Citrus Sinensis ID: 019990
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
|---|
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 332 | 2.2.26 [Sep-21-2011] | |||||||
| Q08062 | 332 | Malate dehydrogenase, cyt | N/A | no | 0.996 | 0.996 | 0.888 | 1e-170 | |
| Q7XDC8 | 332 | Malate dehydrogenase, cyt | yes | no | 1.0 | 1.0 | 0.873 | 1e-169 | |
| O48905 | 332 | Malate dehydrogenase, cyt | N/A | no | 1.0 | 1.0 | 0.867 | 1e-167 | |
| O24047 | 332 | Malate dehydrogenase, cyt | N/A | no | 0.996 | 0.996 | 0.876 | 1e-165 | |
| P93819 | 332 | Malate dehydrogenase, cyt | yes | no | 1.0 | 1.0 | 0.870 | 1e-165 | |
| P57106 | 332 | Malate dehydrogenase, cyt | no | no | 1.0 | 1.0 | 0.870 | 1e-164 | |
| Q9SML8 | 332 | Malate dehydrogenase, cyt | N/A | no | 0.996 | 0.996 | 0.861 | 1e-162 | |
| P11708 | 334 | Malate dehydrogenase, cyt | yes | no | 0.987 | 0.982 | 0.604 | 1e-113 | |
| Q3T145 | 334 | Malate dehydrogenase, cyt | yes | no | 0.984 | 0.979 | 0.603 | 1e-112 | |
| P40925 | 334 | Malate dehydrogenase, cyt | yes | no | 0.987 | 0.982 | 0.595 | 1e-112 |
| >sp|Q08062|MDHC_MAIZE Malate dehydrogenase, cytoplasmic OS=Zea mays PE=2 SV=2 | Back alignment and function desciption |
|---|
Score = 598 bits (1543), Expect = e-170, Method: Compositional matrix adjust.
Identities = 294/331 (88%), Positives = 309/331 (93%)
Query: 1 MAKNPLRVLVTGAAGQIGYALVPMIARGIMLGPDQPVILHMLDIEPAAEALNGVKMELID 60
MAK P+RVLVTGAAGQIGYALVPMIARG+MLG DQPVILHMLDI PAAEALNGVKMEL+D
Sbjct: 1 MAKEPMRVLVTGAAGQIGYALVPMIARGVMLGADQPVILHMLDIPPAAEALNGVKMELVD 60
Query: 61 AAFPLLKGVVATTDVVEACKDVNIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEKH 120
AAFPLLKGVVATTDVVEAC VN+AVMVGGFPRKEGMERKDVMSKNVSIYK+QASALE H
Sbjct: 61 AAFPLLKGVVATTDVVEACTGVNVAVMVGGFPRKEGMERKDVMSKNVSIYKSQASALEAH 120
Query: 121 AAPNCKVLVVANPANTNALILKEFAPSIPAKNITCLTRLDHNRAMGQISERLKVHVSDVK 180
AAPNCKVLVVANPANTNALILKEFAPSIP KN+TCLTRLDHNRA+GQISERL V VSDVK
Sbjct: 121 AAPNCKVLVVANPANTNALILKEFAPSIPEKNVTCLTRLDHNRALGQISERLNVQVSDVK 180
Query: 181 NVIIWGNHSSTQYPDVNHATVTTSKGEKPVREAVADDNWLNTEFITTVQQRGAAIIKARK 240
NVIIWGNHSS+QYPDVNHATV TS GEKPVRE V+DD WLN EFITTVQQRGAAIIKARK
Sbjct: 181 NVIIWGNHSSSQYPDVNHATVKTSTGEKPVRELVSDDEWLNGEFITTVQQRGAAIIKARK 240
Query: 241 LSSALSAASSACDHIRDWVLGTPKGTWVSMGVYSDGSYGIPEGLIYSFPVTCEKGEWSIV 300
SSALSAASSACDHIRDWVLGTP+GT+VSMGVYSDGSYG+P GLIYSFPVTC GEW IV
Sbjct: 241 FSSALSAASSACDHIRDWVLGTPEGTFVSMGVYSDGSYGVPSGLIYSFPVTCSGGEWKIV 300
Query: 301 KGLKVDEFSRAKMDATAEELAEEKTLAYSCL 331
+GL +DEFSR KMDATA+EL EEKTLAYSCL
Sbjct: 301 QGLPIDEFSRKKMDATAQELTEEKTLAYSCL 331
|
Zea mays (taxid: 4577) EC: 1EC: .EC: 1EC: .EC: 1EC: .EC: 3EC: 7 |
| >sp|Q7XDC8|MDHC_ORYSJ Malate dehydrogenase, cytoplasmic OS=Oryza sativa subsp. japonica GN=Os10g0478200 PE=1 SV=3 | Back alignment and function description |
|---|
Score = 595 bits (1534), Expect = e-169, Method: Compositional matrix adjust.
Identities = 290/332 (87%), Positives = 310/332 (93%)
Query: 1 MAKNPLRVLVTGAAGQIGYALVPMIARGIMLGPDQPVILHMLDIEPAAEALNGVKMELID 60
MAK P+RVLVTGAAGQIGYALVPMIARG+MLG DQPVILHMLDI PA E+LNG+KMEL+D
Sbjct: 1 MAKEPMRVLVTGAAGQIGYALVPMIARGVMLGADQPVILHMLDIPPATESLNGLKMELVD 60
Query: 61 AAFPLLKGVVATTDVVEACKDVNIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEKH 120
AAFPLLKG+VATTDVVEAC VN+AVMVGGFPRKEGMERKDVMSKNVSIYK+QASALE H
Sbjct: 61 AAFPLLKGIVATTDVVEACTGVNVAVMVGGFPRKEGMERKDVMSKNVSIYKSQASALEAH 120
Query: 121 AAPNCKVLVVANPANTNALILKEFAPSIPAKNITCLTRLDHNRAMGQISERLKVHVSDVK 180
AAPNCKVLVVANPANTNALILKEFAPSIP KNITCLTRLDHNRA+GQISE+L V V+DVK
Sbjct: 121 AAPNCKVLVVANPANTNALILKEFAPSIPEKNITCLTRLDHNRALGQISEKLNVQVTDVK 180
Query: 181 NVIIWGNHSSTQYPDVNHATVTTSKGEKPVREAVADDNWLNTEFITTVQQRGAAIIKARK 240
N IIWGNHSSTQYPDVNHATV T GEKPVRE VADD WLNTEFI+TVQQRGAAIIKARK
Sbjct: 181 NAIIWGNHSSTQYPDVNHATVKTPSGEKPVRELVADDEWLNTEFISTVQQRGAAIIKARK 240
Query: 241 LSSALSAASSACDHIRDWVLGTPKGTWVSMGVYSDGSYGIPEGLIYSFPVTCEKGEWSIV 300
SSALSAASSACDHIRDWVLGTP+GT+VSMGVYSDGSYG+P GLIYSFPVTC GEW+IV
Sbjct: 241 QSSALSAASSACDHIRDWVLGTPEGTFVSMGVYSDGSYGVPAGLIYSFPVTCSGGEWTIV 300
Query: 301 KGLKVDEFSRAKMDATAEELAEEKTLAYSCLN 332
+GL +DEFSR KMDATA+EL+EEKTLAYSCLN
Sbjct: 301 QGLPIDEFSRKKMDATAQELSEEKTLAYSCLN 332
|
Oryza sativa subsp. japonica (taxid: 39947) EC: 1 EC: . EC: 1 EC: . EC: 1 EC: . EC: 3 EC: 7 |
| >sp|O48905|MDHC_MEDSA Malate dehydrogenase, cytoplasmic OS=Medicago sativa GN=CMDH PE=2 SV=1 | Back alignment and function description |
|---|
Score = 587 bits (1514), Expect = e-167, Method: Compositional matrix adjust.
Identities = 288/332 (86%), Positives = 309/332 (93%)
Query: 1 MAKNPLRVLVTGAAGQIGYALVPMIARGIMLGPDQPVILHMLDIEPAAEALNGVKMELID 60
MAK+P+RVLVTGAAGQIGYALVPMIARG+MLGPDQPVILHMLDI PAAE+LNGVKMEL+D
Sbjct: 1 MAKDPVRVLVTGAAGQIGYALVPMIARGVMLGPDQPVILHMLDIAPAAESLNGVKMELVD 60
Query: 61 AAFPLLKGVVATTDVVEACKDVNIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEKH 120
AAFPLLKGVVATTDVVEAC VNIAVMVGGFPRKEGMERKDVMSKNVSIYK+QASALEKH
Sbjct: 61 AAFPLLKGVVATTDVVEACTGVNIAVMVGGFPRKEGMERKDVMSKNVSIYKSQASALEKH 120
Query: 121 AAPNCKVLVVANPANTNALILKEFAPSIPAKNITCLTRLDHNRAMGQISERLKVHVSDVK 180
AA NCKVLVVANPANTNALILKEFAPSIP +NI+CLTRLDHNRA+GQISERL V VSDVK
Sbjct: 121 AAANCKVLVVANPANTNALILKEFAPSIPERNISCLTRLDHNRALGQISERLNVQVSDVK 180
Query: 181 NVIIWGNHSSTQYPDVNHATVTTSKGEKPVREAVADDNWLNTEFITTVQQRGAAIIKARK 240
NVIIWGNHSSTQYPDVNHATV T GEKPVR+ V+DD WLN EFI+TVQQRGAAIIKARK
Sbjct: 181 NVIIWGNHSSTQYPDVNHATVNTPAGEKPVRQLVSDDAWLNGEFISTVQQRGAAIIKARK 240
Query: 241 LSSALSAASSACDHIRDWVLGTPKGTWVSMGVYSDGSYGIPEGLIYSFPVTCEKGEWSIV 300
LSSALSAAS+ACDHIRDWVLGTP+GT+VSMGVYSDGSY +P GLIYSFPVTC GEW IV
Sbjct: 241 LSSALSAASAACDHIRDWVLGTPQGTFVSMGVYSDGSYNVPSGLIYSFPVTCANGEWKIV 300
Query: 301 KGLKVDEFSRAKMDATAEELAEEKTLAYSCLN 332
+GL +DEFSR K+D TAEEL EEK LA+SCL+
Sbjct: 301 QGLSIDEFSRKKLDLTAEELTEEKNLAHSCLS 332
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Medicago sativa (taxid: 3879) EC: 1 EC: . EC: 1 EC: . EC: 1 EC: . EC: 3 EC: 7 |
| >sp|O24047|MDHC_MESCR Malate dehydrogenase, cytoplasmic OS=Mesembryanthemum crystallinum GN=MDH PE=2 SV=1 | Back alignment and function description |
|---|
Score = 580 bits (1496), Expect = e-165, Method: Compositional matrix adjust.
Identities = 290/331 (87%), Positives = 305/331 (92%)
Query: 1 MAKNPLRVLVTGAAGQIGYALVPMIARGIMLGPDQPVILHMLDIEPAAEALNGVKMELID 60
MA PLRVLVTGAAGQIGYALVPMIARGIMLG +QPVILHMLDI PAAEALNGVKMEL+D
Sbjct: 1 MAVEPLRVLVTGAAGQIGYALVPMIARGIMLGANQPVILHMLDIPPAAEALNGVKMELVD 60
Query: 61 AAFPLLKGVVATTDVVEACKDVNIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEKH 120
AAFPLLKGVVATTD EACK VN+AVMVGGFPRKEGMERKDVMSKNVSIYKAQASALE+H
Sbjct: 61 AAFPLLKGVVATTDAAEACKGVNVAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEQH 120
Query: 121 AAPNCKVLVVANPANTNALILKEFAPSIPAKNITCLTRLDHNRAMGQISERLKVHVSDVK 180
AAPNCKVLVVANPANTNALILKEFAPSIP KNI+CLTRLDHNRA+GQISERL V VSDVK
Sbjct: 121 AAPNCKVLVVANPANTNALILKEFAPSIPEKNISCLTRLDHNRALGQISERLNVQVSDVK 180
Query: 181 NVIIWGNHSSTQYPDVNHATVTTSKGEKPVREAVADDNWLNTEFITTVQQRGAAIIKARK 240
NVIIWGNHSSTQYPDVNHATV T +KPVRE VADD WLN EFITTVQQRGAAIIKARK
Sbjct: 181 NVIIWGNHSSTQYPDVNHATVKTQGVDKPVRELVADDAWLNGEFITTVQQRGAAIIKARK 240
Query: 241 LSSALSAASSACDHIRDWVLGTPKGTWVSMGVYSDGSYGIPEGLIYSFPVTCEKGEWSIV 300
LSSALSAASSACDHI DWVLGTP+GTWVSMGVYSDGSY +P G+IYSFPVTC+ GEW+IV
Sbjct: 241 LSSALSAASSACDHIHDWVLGTPEGTWVSMGVYSDGSYNVPAGIIYSFPVTCKNGEWTIV 300
Query: 301 KGLKVDEFSRAKMDATAEELAEEKTLAYSCL 331
+GL +D+ SR KMDATA EL EEKTLAYSCL
Sbjct: 301 QGLPIDDDSRKKMDATAAELVEEKTLAYSCL 331
|
Mesembryanthemum crystallinum (taxid: 3544) EC: 1 EC: . EC: 1 EC: . EC: 1 EC: . EC: 3 EC: 7 |
| >sp|P93819|MDHC1_ARATH Malate dehydrogenase, cytoplasmic 1 OS=Arabidopsis thaliana GN=At1g04410 PE=1 SV=2 | Back alignment and function description |
|---|
Score = 580 bits (1495), Expect = e-165, Method: Compositional matrix adjust.
Identities = 289/332 (87%), Positives = 305/332 (91%)
Query: 1 MAKNPLRVLVTGAAGQIGYALVPMIARGIMLGPDQPVILHMLDIEPAAEALNGVKMELID 60
MAK P+RVLVTGAAGQIGYALVPMIARGIMLG DQPVILHMLDI PAAEALNGVKMELID
Sbjct: 1 MAKEPVRVLVTGAAGQIGYALVPMIARGIMLGADQPVILHMLDIPPAAEALNGVKMELID 60
Query: 61 AAFPLLKGVVATTDVVEACKDVNIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEKH 120
AAFPLLKGVVATTD VE C VN+AVMVGGFPRKEGMERKDVMSKNVSIYK+QA+ALEKH
Sbjct: 61 AAFPLLKGVVATTDAVEGCTGVNVAVMVGGFPRKEGMERKDVMSKNVSIYKSQAAALEKH 120
Query: 121 AAPNCKVLVVANPANTNALILKEFAPSIPAKNITCLTRLDHNRAMGQISERLKVHVSDVK 180
AAPNCKVLVVANPANTNALILKEFAPSIP KNI+CLTRLDHNRA+GQISERL V VSDVK
Sbjct: 121 AAPNCKVLVVANPANTNALILKEFAPSIPEKNISCLTRLDHNRALGQISERLSVPVSDVK 180
Query: 181 NVIIWGNHSSTQYPDVNHATVTTSKGEKPVREAVADDNWLNTEFITTVQQRGAAIIKARK 240
NVIIWGNHSS+QYPDVNHA V TS GEKPVRE V DD WL+ EFI+TVQQRGAAIIKARK
Sbjct: 181 NVIIWGNHSSSQYPDVNHAKVQTSSGEKPVRELVKDDAWLDGEFISTVQQRGAAIIKARK 240
Query: 241 LSSALSAASSACDHIRDWVLGTPKGTWVSMGVYSDGSYGIPEGLIYSFPVTCEKGEWSIV 300
LSSALSAASSACDHIRDWVLGTP+GT+VSMGVYSDGSY +P GLIYSFPVTC G+WSIV
Sbjct: 241 LSSALSAASSACDHIRDWVLGTPEGTFVSMGVYSDGSYSVPSGLIYSFPVTCRNGDWSIV 300
Query: 301 KGLKVDEFSRAKMDATAEELAEEKTLAYSCLN 332
+GL +DE SR KMD TAEEL EEK LAYSCL+
Sbjct: 301 QGLPIDEVSRKKMDLTAEELKEEKDLAYSCLS 332
|
Arabidopsis thaliana (taxid: 3702) EC: 1 EC: . EC: 1 EC: . EC: 1 EC: . EC: 3 EC: 7 |
| >sp|P57106|MDHC2_ARATH Malate dehydrogenase, cytoplasmic 2 OS=Arabidopsis thaliana GN=At5g43330 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 578 bits (1490), Expect = e-164, Method: Compositional matrix adjust.
Identities = 289/332 (87%), Positives = 306/332 (92%)
Query: 1 MAKNPLRVLVTGAAGQIGYALVPMIARGIMLGPDQPVILHMLDIEPAAEALNGVKMELID 60
MAK P+RVLVTGAAGQIGYALVPMIARGIMLG DQPVILHMLDI AAEALNGVKMEL+D
Sbjct: 1 MAKEPVRVLVTGAAGQIGYALVPMIARGIMLGADQPVILHMLDIPFAAEALNGVKMELVD 60
Query: 61 AAFPLLKGVVATTDVVEACKDVNIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEKH 120
AAFPLLKGVVATTD VEAC VN+AVMVGGFPRKEGMERKDVMSKNVSIYK+QASALEKH
Sbjct: 61 AAFPLLKGVVATTDAVEACTGVNVAVMVGGFPRKEGMERKDVMSKNVSIYKSQASALEKH 120
Query: 121 AAPNCKVLVVANPANTNALILKEFAPSIPAKNITCLTRLDHNRAMGQISERLKVHVSDVK 180
AAPNCKVLVVANPANTNALILKEFAPSIP KNITCLTRLDHNRA+GQ+SERL V VSDVK
Sbjct: 121 AAPNCKVLVVANPANTNALILKEFAPSIPEKNITCLTRLDHNRALGQVSERLSVPVSDVK 180
Query: 181 NVIIWGNHSSTQYPDVNHATVTTSKGEKPVREAVADDNWLNTEFITTVQQRGAAIIKARK 240
NVIIWGNHSSTQYPDVNHATV TS GEKPVRE V +D WLN EFI+TVQQRGAAIIKARK
Sbjct: 181 NVIIWGNHSSTQYPDVNHATVKTSVGEKPVRELVKNDEWLNGEFISTVQQRGAAIIKARK 240
Query: 241 LSSALSAASSACDHIRDWVLGTPKGTWVSMGVYSDGSYGIPEGLIYSFPVTCEKGEWSIV 300
LSSALSAASSACDHIRDWV+GTP+GT+VSMGVYSDGSY +P GLIYSFPVTC GEW+IV
Sbjct: 241 LSSALSAASSACDHIRDWVVGTPEGTFVSMGVYSDGSYNVPAGLIYSFPVTCRNGEWTIV 300
Query: 301 KGLKVDEFSRAKMDATAEELAEEKTLAYSCLN 332
+GL +D+ SR KMD TAEEL EEK LAYSCL+
Sbjct: 301 QGLPIDDASRKKMDLTAEELKEEKDLAYSCLS 332
|
Arabidopsis thaliana (taxid: 3702) EC: 1 EC: . EC: 1 EC: . EC: 1 EC: . EC: 3 EC: 7 |
| >sp|Q9SML8|MDHC_BETVU Malate dehydrogenase, cytoplasmic OS=Beta vulgaris GN=NR1 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 571 bits (1472), Expect = e-162, Method: Compositional matrix adjust.
Identities = 285/331 (86%), Positives = 300/331 (90%)
Query: 1 MAKNPLRVLVTGAAGQIGYALVPMIARGIMLGPDQPVILHMLDIEPAAEALNGVKMELID 60
MA PLRVLVTGAAGQIGYALVPMIARG+MLG +QPVILHMLDI PAAEALNGVKMEL+D
Sbjct: 1 MAVEPLRVLVTGAAGQIGYALVPMIARGVMLGANQPVILHMLDIPPAAEALNGVKMELVD 60
Query: 61 AAFPLLKGVVATTDVVEACKDVNIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEKH 120
AAFPLLKGVVATTDV EACK VN+AVMVGGFPRKEGMERKDVM KNVSIYK+QASALE++
Sbjct: 61 AAFPLLKGVVATTDVAEACKGVNVAVMVGGFPRKEGMERKDVMPKNVSIYKSQASALEQY 120
Query: 121 AAPNCKVLVVANPANTNALILKEFAPSIPAKNITCLTRLDHNRAMGQISERLKVHVSDVK 180
AAPNCKVLVVANPANTNALILKEFAPSIP KNITCLTRLDHNRA+GQISERL VSDVK
Sbjct: 121 AAPNCKVLVVANPANTNALILKEFAPSIPEKNITCLTRLDHNRALGQISERLNAQVSDVK 180
Query: 181 NVIIWGNHSSTQYPDVNHATVTTSKGEKPVREAVADDNWLNTEFITTVQQRGAAIIKARK 240
NVIIWGNHSS+QYPDVN TV T GEK VRE VADD WLN EFITTVQQRGAAIIKARK
Sbjct: 181 NVIIWGNHSSSQYPDVNPCTVKTGSGEKAVRELVADDAWLNGEFITTVQQRGAAIIKARK 240
Query: 241 LSSALSAASSACDHIRDWVLGTPKGTWVSMGVYSDGSYGIPEGLIYSFPVTCEKGEWSIV 300
LSSALSAASSACDHIRDWVLGTP+GTWVSMGVYSDGSY +P G+IYSFPVTC+ GEW IV
Sbjct: 241 LSSALSAASSACDHIRDWVLGTPEGTWVSMGVYSDGSYNVPAGIIYSFPVTCKDGEWKIV 300
Query: 301 KGLKVDEFSRAKMDATAEELAEEKTLAYSCL 331
+GL +DE SR KMDAT EL EEK LAYSCL
Sbjct: 301 QGLPIDEVSRQKMDATGAELVEEKALAYSCL 331
|
Beta vulgaris (taxid: 161934) EC: 1 EC: . EC: 1 EC: . EC: 1 EC: . EC: 3 EC: 7 |
| >sp|P11708|MDHC_PIG Malate dehydrogenase, cytoplasmic OS=Sus scrofa GN=MDH1 PE=1 SV=4 | Back alignment and function description |
|---|
Score = 407 bits (1045), Expect = e-113, Method: Compositional matrix adjust.
Identities = 199/329 (60%), Positives = 246/329 (74%), Gaps = 1/329 (0%)
Query: 5 PLRVLVTGAAGQIGYALVPMIARGIMLGPDQPVILHMLDIEPAAEALNGVKMELIDAAFP 64
P+RVLVTGAAGQI Y+L+ I G + G DQP+IL +LDI P L+GV MEL D A P
Sbjct: 4 PIRVLVTGAAGQIAYSLLYSIGNGSVFGKDQPIILVLLDITPMMGVLDGVLMELQDCALP 63
Query: 65 LLKGVVATTDVVEACKDVNIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEKHAAPN 124
LLK V+AT A KD+++A++VG PR++GMERKD++ NV I+K Q +AL+K+A +
Sbjct: 64 LLKDVIATDKEEIAFKDLDVAILVGSMPRRDGMERKDLLKANVKIFKCQGAALDKYAKKS 123
Query: 125 CKVLVVANPANTNALILKEFAPSIPAKNITCLTRLDHNRAMGQISERLKVHVSDVKNVII 184
KV+VV NPANTN L + APSIP +N +CLTRLDHNRA QI+ +L V DVKNVII
Sbjct: 124 VKVIVVGNPANTNCLTASKSAPSIPKENFSCLTRLDHNRAKAQIALKLGVTSDDVKNVII 183
Query: 185 WGNHSSTQYPDVNHATVTTSKGEKPVREAVADDNWLNTEFITTVQQRGAAIIKARKLSSA 244
WGNHSSTQYPDVNHA V E V EAV DD+WL EFITTVQQRGAA+IKARKLSSA
Sbjct: 184 WGNHSSTQYPDVNHAKVKLQAKEVGVYEAVKDDSWLKGEFITTVQQRGAAVIKARKLSSA 243
Query: 245 LSAASSACDHIRDWVLGTPKGTWVSMGVYSDG-SYGIPEGLIYSFPVTCEKGEWSIVKGL 303
+SAA + CDH+RD GTP+G +VSMG+ SDG SYG+P+ L+YSFPVT + W IV+GL
Sbjct: 244 MSAAKAICDHVRDIWFGTPEGEFVSMGIISDGNSYGVPDDLLYSFPVTIKDKTWKIVEGL 303
Query: 304 KVDEFSRAKMDATAEELAEEKTLAYSCLN 332
+++FSR KMD TA+ELAEEK A+ L+
Sbjct: 304 PINDFSREKMDLTAKELAEEKETAFEFLS 332
|
Sus scrofa (taxid: 9823) EC: 1 EC: . EC: 1 EC: . EC: 1 EC: . EC: 3 EC: 7 |
| >sp|Q3T145|MDHC_BOVIN Malate dehydrogenase, cytoplasmic OS=Bos taurus GN=MDH1 PE=2 SV=3 | Back alignment and function description |
|---|
Score = 405 bits (1041), Expect = e-112, Method: Compositional matrix adjust.
Identities = 198/328 (60%), Positives = 245/328 (74%), Gaps = 1/328 (0%)
Query: 5 PLRVLVTGAAGQIGYALVPMIARGIMLGPDQPVILHMLDIEPAAEALNGVKMELIDAAFP 64
P+RVLVTGAAGQI Y+L+ I G + G DQP+IL +LDI P L+GV MEL D A P
Sbjct: 4 PIRVLVTGAAGQIAYSLLYSIGNGSVFGKDQPIILVLLDITPMMGVLDGVLMELQDCALP 63
Query: 65 LLKGVVATTDVVEACKDVNIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEKHAAPN 124
LLK V+AT A KD+++A++VG PR++GMERKD++ NV I+K Q +AL+K+A +
Sbjct: 64 LLKDVIATDKEEIAFKDLDVAILVGSMPRRDGMERKDLLKANVKIFKCQGAALDKYAKKS 123
Query: 125 CKVLVVANPANTNALILKEFAPSIPAKNITCLTRLDHNRAMGQISERLKVHVSDVKNVII 184
KV+VV NPANTN L + APSIP +N +CLTRLDHNRA QI+ +L V DVKNVII
Sbjct: 124 VKVIVVGNPANTNCLTASKSAPSIPKENFSCLTRLDHNRAKAQIALKLGVTSDDVKNVII 183
Query: 185 WGNHSSTQYPDVNHATVTTSKGEKPVREAVADDNWLNTEFITTVQQRGAAIIKARKLSSA 244
WGNHSSTQYPDVNHA V E V EA+ DD+WL EFITTVQQRGAA+IKARKLSSA
Sbjct: 184 WGNHSSTQYPDVNHAKVKLQGKEVGVYEALKDDSWLKGEFITTVQQRGAAVIKARKLSSA 243
Query: 245 LSAASSACDHIRDWVLGTPKGTWVSMGVYSDG-SYGIPEGLIYSFPVTCEKGEWSIVKGL 303
+SAA + CDH+RD GTP+G +VSMG+ SDG SYGIP+ L+YSFPVT + W +V+GL
Sbjct: 244 MSAAKAICDHVRDIWFGTPEGEFVSMGIISDGNSYGIPDDLLYSFPVTIKDKTWKVVEGL 303
Query: 304 KVDEFSRAKMDATAEELAEEKTLAYSCL 331
+++FSR KMD TA+ELAEEK A+ L
Sbjct: 304 PINDFSREKMDLTAKELAEEKETAFEFL 331
|
Bos taurus (taxid: 9913) EC: 1 EC: . EC: 1 EC: . EC: 1 EC: . EC: 3 EC: 7 |
| >sp|P40925|MDHC_HUMAN Malate dehydrogenase, cytoplasmic OS=Homo sapiens GN=MDH1 PE=1 SV=4 | Back alignment and function description |
|---|
Score = 403 bits (1036), Expect = e-112, Method: Compositional matrix adjust.
Identities = 196/329 (59%), Positives = 245/329 (74%), Gaps = 1/329 (0%)
Query: 5 PLRVLVTGAAGQIGYALVPMIARGIMLGPDQPVILHMLDIEPAAEALNGVKMELIDAAFP 64
P+RVLVTGAAGQI Y+L+ I G + G DQP+IL +LDI P L+GV MEL D A P
Sbjct: 4 PIRVLVTGAAGQIAYSLLYSIGNGSVFGKDQPIILVLLDITPMMGVLDGVLMELQDCALP 63
Query: 65 LLKGVVATTDVVEACKDVNIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEKHAAPN 124
LLK V+AT A KD+++A++VG PR+EGMERKD++ NV I+K+Q +AL+K+A +
Sbjct: 64 LLKDVIATDKEDVAFKDLDVAILVGSMPRREGMERKDLLKANVKIFKSQGAALDKYAKKS 123
Query: 125 CKVLVVANPANTNALILKEFAPSIPAKNITCLTRLDHNRAMGQISERLKVHVSDVKNVII 184
KV+VV NPANTN L + APSIP +N +CLTRLDHNRA QI+ +L V +DVKNVII
Sbjct: 124 VKVIVVGNPANTNCLTASKSAPSIPKENFSCLTRLDHNRAKAQIALKLGVTANDVKNVII 183
Query: 185 WGNHSSTQYPDVNHATVTTSKGEKPVREAVADDNWLNTEFITTVQQRGAAIIKARKLSSA 244
WGNHSSTQYPDVNHA V E V EA+ DD+WL EF+TTVQQRGAA+IKARKLSSA
Sbjct: 184 WGNHSSTQYPDVNHAKVKLQGKEVGVYEALKDDSWLKGEFVTTVQQRGAAVIKARKLSSA 243
Query: 245 LSAASSACDHIRDWVLGTPKGTWVSMGVYSDG-SYGIPEGLIYSFPVTCEKGEWSIVKGL 303
+SAA + CDH+RD GTP+G +VSMGV SDG SYG+P+ L+YSFPV + W V+GL
Sbjct: 244 MSAAKAICDHVRDIWFGTPEGEFVSMGVISDGNSYGVPDDLLYSFPVVIKNKTWKFVEGL 303
Query: 304 KVDEFSRAKMDATAEELAEEKTLAYSCLN 332
+++FSR KMD TA+EL EEK A+ L+
Sbjct: 304 PINDFSREKMDLTAKELTEEKESAFEFLS 332
|
Homo sapiens (taxid: 9606) EC: 1 EC: . EC: 1 EC: . EC: 1 EC: . EC: 3 EC: 7 |
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 332 | ||||||
| 449431976 | 364 | PREDICTED: malate dehydrogenase, cytopla | 0.996 | 0.909 | 0.915 | 1e-174 | |
| 225453490 | 332 | PREDICTED: malate dehydrogenase, cytopla | 1.0 | 1.0 | 0.900 | 1e-172 | |
| 449478013 | 391 | PREDICTED: malate dehydrogenase, cytopla | 0.987 | 0.838 | 0.914 | 1e-172 | |
| 255541140 | 332 | malate dehydrogenase, putative [Ricinus | 1.0 | 1.0 | 0.903 | 1e-171 | |
| 242039369 | 332 | hypothetical protein SORBIDRAFT_01g01928 | 0.996 | 0.996 | 0.897 | 1e-169 | |
| 350534656 | 334 | cytosolic malate dehydrogenase [Solanum | 0.993 | 0.988 | 0.9 | 1e-169 | |
| 224063661 | 332 | predicted protein [Populus trichocarpa] | 1.0 | 1.0 | 0.882 | 1e-169 | |
| 162464321 | 332 | malate dehydrogenase, cytoplasmic [Zea m | 0.996 | 0.996 | 0.888 | 1e-169 | |
| 187235712 | 332 | cytoplasmic malate dehydrogennase [Zea m | 0.996 | 0.996 | 0.885 | 1e-168 | |
| 226503019 | 332 | malate dehydrogenase, cytoplasmic [Zea m | 0.996 | 0.996 | 0.885 | 1e-168 |
| >gi|449431976|ref|XP_004133776.1| PREDICTED: malate dehydrogenase, cytoplasmic-like [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 617 bits (1591), Expect = e-174, Method: Compositional matrix adjust.
Identities = 303/331 (91%), Positives = 317/331 (95%)
Query: 1 MAKNPLRVLVTGAAGQIGYALVPMIARGIMLGPDQPVILHMLDIEPAAEALNGVKMELID 60
M K P+RVLVTGAAGQIGYA+VPMIARG+MLGPDQPVILHMLDIEPAAEALNGVKMELID
Sbjct: 33 MEKEPIRVLVTGAAGQIGYAIVPMIARGVMLGPDQPVILHMLDIEPAAEALNGVKMELID 92
Query: 61 AAFPLLKGVVATTDVVEACKDVNIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEKH 120
AAFPLLKGV+ATTDVVEACK+VNIAVMVGGFPRKEGMERKDVM+KNVSIYK QASALE+H
Sbjct: 93 AAFPLLKGVIATTDVVEACKEVNIAVMVGGFPRKEGMERKDVMTKNVSIYKKQASALEQH 152
Query: 121 AAPNCKVLVVANPANTNALILKEFAPSIPAKNITCLTRLDHNRAMGQISERLKVHVSDVK 180
AAP+CKVLVVANPANTNALILKEFAPSIP KNITCLTRLDHNRA+GQISERLKVHVSDV
Sbjct: 153 AAPDCKVLVVANPANTNALILKEFAPSIPEKNITCLTRLDHNRALGQISERLKVHVSDVN 212
Query: 181 NVIIWGNHSSTQYPDVNHATVTTSKGEKPVREAVADDNWLNTEFITTVQQRGAAIIKARK 240
NVIIWGNHSSTQYPDVNHA VTTS GEKPVRE VADD WLNTEFI TVQQRGAAIIKARK
Sbjct: 213 NVIIWGNHSSTQYPDVNHAKVTTSSGEKPVRELVADDQWLNTEFIATVQQRGAAIIKARK 272
Query: 241 LSSALSAASSACDHIRDWVLGTPKGTWVSMGVYSDGSYGIPEGLIYSFPVTCEKGEWSIV 300
LSSALSAAS+ACDHIR+WVLGTPKGTWVSMGVYSDGSYGI GLIYSFPVTCEKGEWSIV
Sbjct: 273 LSSALSAASAACDHIRNWVLGTPKGTWVSMGVYSDGSYGIERGLIYSFPVTCEKGEWSIV 332
Query: 301 KGLKVDEFSRAKMDATAEELAEEKTLAYSCL 331
+GLK+DEFSRAKMDATA+EL EEK LAYSCL
Sbjct: 333 QGLKIDEFSRAKMDATAKELIEEKALAYSCL 363
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|225453490|ref|XP_002277543.1| PREDICTED: malate dehydrogenase, cytoplasmic [Vitis vinifera] gi|297734557|emb|CBI16608.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 610 bits (1573), Expect = e-172, Method: Compositional matrix adjust.
Identities = 299/332 (90%), Positives = 316/332 (95%)
Query: 1 MAKNPLRVLVTGAAGQIGYALVPMIARGIMLGPDQPVILHMLDIEPAAEALNGVKMELID 60
MAK+ +RVLVTGAAGQIGYALVPMIARG+MLGPDQPVILHMLDIEPAAEALNGVKMELID
Sbjct: 1 MAKDAVRVLVTGAAGQIGYALVPMIARGLMLGPDQPVILHMLDIEPAAEALNGVKMELID 60
Query: 61 AAFPLLKGVVATTDVVEACKDVNIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEKH 120
AAFPLL+GVVATTD +EACKDVNIAVMVGGFPRKEGMERKD+M KNVSIYKAQASALE+H
Sbjct: 61 AAFPLLRGVVATTDAIEACKDVNIAVMVGGFPRKEGMERKDMMKKNVSIYKAQASALEQH 120
Query: 121 AAPNCKVLVVANPANTNALILKEFAPSIPAKNITCLTRLDHNRAMGQISERLKVHVSDVK 180
AAPNCKVLVVANPANTNALILKEFAPSIP KN+TCLTRLDHNRA+GQISE+L VHV DVK
Sbjct: 121 AAPNCKVLVVANPANTNALILKEFAPSIPEKNVTCLTRLDHNRALGQISEKLFVHVGDVK 180
Query: 181 NVIIWGNHSSTQYPDVNHATVTTSKGEKPVREAVADDNWLNTEFITTVQQRGAAIIKARK 240
N IIWGNHSSTQYPDVNHATV+T GEKPVRE +ADDNW+NTEFITTVQQRGAAIIKARK
Sbjct: 181 NAIIWGNHSSTQYPDVNHATVSTCNGEKPVRELIADDNWINTEFITTVQQRGAAIIKARK 240
Query: 241 LSSALSAASSACDHIRDWVLGTPKGTWVSMGVYSDGSYGIPEGLIYSFPVTCEKGEWSIV 300
LSSALSAASSACDHIRDWVLGTPKG WVSMGVYSDGSYGI G+IYSFPVTCEKGEWSIV
Sbjct: 241 LSSALSAASSACDHIRDWVLGTPKGAWVSMGVYSDGSYGIQPGIIYSFPVTCEKGEWSIV 300
Query: 301 KGLKVDEFSRAKMDATAEELAEEKTLAYSCLN 332
+GLK+DEFSR KMDATA+EL EEK LAYSCLN
Sbjct: 301 QGLKIDEFSRGKMDATAKELMEEKALAYSCLN 332
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449478013|ref|XP_004155195.1| PREDICTED: malate dehydrogenase, cytoplasmic-like [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 609 bits (1570), Expect = e-172, Method: Compositional matrix adjust.
Identities = 300/328 (91%), Positives = 314/328 (95%)
Query: 1 MAKNPLRVLVTGAAGQIGYALVPMIARGIMLGPDQPVILHMLDIEPAAEALNGVKMELID 60
M K P+RVLVTGAAGQIGYA+VPMIARG+MLGPDQPVILHMLDIEPAAEALNGVKMELID
Sbjct: 33 MEKEPIRVLVTGAAGQIGYAIVPMIARGVMLGPDQPVILHMLDIEPAAEALNGVKMELID 92
Query: 61 AAFPLLKGVVATTDVVEACKDVNIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEKH 120
AAFPLLKGV+ATTDVVEACK+VNIAVMVGGFPRKEGMERKDVM+KNVSIYK QASALE+H
Sbjct: 93 AAFPLLKGVIATTDVVEACKEVNIAVMVGGFPRKEGMERKDVMTKNVSIYKKQASALEQH 152
Query: 121 AAPNCKVLVVANPANTNALILKEFAPSIPAKNITCLTRLDHNRAMGQISERLKVHVSDVK 180
AAP+CKVLVVANPANTNALILKEFAPSIP KNITCLTRLDHNRA+GQISERLKVHVSDV
Sbjct: 153 AAPDCKVLVVANPANTNALILKEFAPSIPEKNITCLTRLDHNRALGQISERLKVHVSDVN 212
Query: 181 NVIIWGNHSSTQYPDVNHATVTTSKGEKPVREAVADDNWLNTEFITTVQQRGAAIIKARK 240
NVIIWGNHSSTQYPDVNHA VTTS GEKPVRE VADD WLNTEFI TVQQRGAAIIKARK
Sbjct: 213 NVIIWGNHSSTQYPDVNHAKVTTSSGEKPVRELVADDQWLNTEFIATVQQRGAAIIKARK 272
Query: 241 LSSALSAASSACDHIRDWVLGTPKGTWVSMGVYSDGSYGIPEGLIYSFPVTCEKGEWSIV 300
LSSALSAAS+ACDHIR+WVLGTPKGTWVSMGVYSDGSYGI GLIYSFPVTCEKGEWSIV
Sbjct: 273 LSSALSAASAACDHIRNWVLGTPKGTWVSMGVYSDGSYGIERGLIYSFPVTCEKGEWSIV 332
Query: 301 KGLKVDEFSRAKMDATAEELAEEKTLAY 328
+GLK+DEFSRAKMDATA+EL EEK LAY
Sbjct: 333 QGLKIDEFSRAKMDATAKELIEEKALAY 360
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|255541140|ref|XP_002511634.1| malate dehydrogenase, putative [Ricinus communis] gi|223548814|gb|EEF50303.1| malate dehydrogenase, putative [Ricinus communis] | Back alignment and taxonomy information |
|---|
Score = 608 bits (1567), Expect = e-171, Method: Compositional matrix adjust.
Identities = 300/332 (90%), Positives = 315/332 (94%)
Query: 1 MAKNPLRVLVTGAAGQIGYALVPMIARGIMLGPDQPVILHMLDIEPAAEALNGVKMELID 60
MAK+P+RVLVTGAAGQIGYA+VPMIARG+MLGPDQPVILH+LDIEPA+EAL GVKMELID
Sbjct: 1 MAKDPVRVLVTGAAGQIGYAIVPMIARGVMLGPDQPVILHLLDIEPASEALKGVKMELID 60
Query: 61 AAFPLLKGVVATTDVVEACKDVNIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEKH 120
AAFPLLKGV+ATTD VEAC VNIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEKH
Sbjct: 61 AAFPLLKGVIATTDAVEACMGVNIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEKH 120
Query: 121 AAPNCKVLVVANPANTNALILKEFAPSIPAKNITCLTRLDHNRAMGQISERLKVHVSDVK 180
AA +CKVLVVANPANTNALILKEFAPSIP KNITCLTRLDHNRA+GQISERL VHVS+V
Sbjct: 121 AAADCKVLVVANPANTNALILKEFAPSIPEKNITCLTRLDHNRALGQISERLDVHVSEVT 180
Query: 181 NVIIWGNHSSTQYPDVNHATVTTSKGEKPVREAVADDNWLNTEFITTVQQRGAAIIKARK 240
NVIIWGNHSSTQYPDVNHATV TS GEKPVRE VADD WLN EFITTVQQRGAAIIKARK
Sbjct: 181 NVIIWGNHSSTQYPDVNHATVQTSSGEKPVRELVADDQWLNAEFITTVQQRGAAIIKARK 240
Query: 241 LSSALSAASSACDHIRDWVLGTPKGTWVSMGVYSDGSYGIPEGLIYSFPVTCEKGEWSIV 300
LSSALSAAS+ACDHIRDWVLGTPKGTWVSMGVYSDGSYGI GLIYSFPVTCEKG WSIV
Sbjct: 241 LSSALSAASAACDHIRDWVLGTPKGTWVSMGVYSDGSYGIQPGLIYSFPVTCEKGNWSIV 300
Query: 301 KGLKVDEFSRAKMDATAEELAEEKTLAYSCLN 332
+GLK+DEFSRAKMDATA+EL EEK+LAYSCLN
Sbjct: 301 QGLKIDEFSRAKMDATAKELIEEKSLAYSCLN 332
|
Source: Ricinus communis Species: Ricinus communis Genus: Ricinus Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|242039369|ref|XP_002467079.1| hypothetical protein SORBIDRAFT_01g019280 [Sorghum bicolor] gi|241920933|gb|EER94077.1| hypothetical protein SORBIDRAFT_01g019280 [Sorghum bicolor] | Back alignment and taxonomy information |
|---|
Score = 601 bits (1549), Expect = e-169, Method: Compositional matrix adjust.
Identities = 297/331 (89%), Positives = 312/331 (94%)
Query: 1 MAKNPLRVLVTGAAGQIGYALVPMIARGIMLGPDQPVILHMLDIEPAAEALNGVKMELID 60
MAK+P+RVLVTGAAGQIGYALVPMIARG+MLG DQPVILHMLDI PAAEALNGVKMEL+D
Sbjct: 1 MAKDPMRVLVTGAAGQIGYALVPMIARGVMLGADQPVILHMLDIPPAAEALNGVKMELVD 60
Query: 61 AAFPLLKGVVATTDVVEACKDVNIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEKH 120
AAFPLLKGVVATTDVVEAC VN+AVMVGGFPRKEGMERKDVMSKNVSIYKAQASALE H
Sbjct: 61 AAFPLLKGVVATTDVVEACTGVNVAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEAH 120
Query: 121 AAPNCKVLVVANPANTNALILKEFAPSIPAKNITCLTRLDHNRAMGQISERLKVHVSDVK 180
AAPNCKVLVVANPANTNALILKEFAPSIP KN+TCLTRLDHNRA+GQISERL V VSDVK
Sbjct: 121 AAPNCKVLVVANPANTNALILKEFAPSIPEKNVTCLTRLDHNRALGQISERLSVQVSDVK 180
Query: 181 NVIIWGNHSSTQYPDVNHATVTTSKGEKPVREAVADDNWLNTEFITTVQQRGAAIIKARK 240
NVIIWGNHSSTQYPDVNHATV TS GEKPVRE VADD WLN EFITTVQQRGAAIIKARK
Sbjct: 181 NVIIWGNHSSTQYPDVNHATVKTSTGEKPVRELVADDEWLNGEFITTVQQRGAAIIKARK 240
Query: 241 LSSALSAASSACDHIRDWVLGTPKGTWVSMGVYSDGSYGIPEGLIYSFPVTCEKGEWSIV 300
LSSALSAASSACDHIRDWVLGTP+GT+VSMGVYSDGSYG+P GLIYSFPVTC GEW IV
Sbjct: 241 LSSALSAASSACDHIRDWVLGTPEGTFVSMGVYSDGSYGVPSGLIYSFPVTCSGGEWKIV 300
Query: 301 KGLKVDEFSRAKMDATAEELAEEKTLAYSCL 331
+GL +DEFSR K+DATA+EL+EEKTLAYSCL
Sbjct: 301 QGLPIDEFSRKKLDATAQELSEEKTLAYSCL 331
|
Source: Sorghum bicolor Species: Sorghum bicolor Genus: Sorghum Family: Poaceae Order: Poales Class: Liliopsida Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|350534656|ref|NP_001234152.1| cytosolic malate dehydrogenase [Solanum lycopersicum] gi|52139818|gb|AAU29199.1| cytosolic malate dehydrogenase [Solanum lycopersicum] | Back alignment and taxonomy information |
|---|
Score = 600 bits (1548), Expect = e-169, Method: Compositional matrix adjust.
Identities = 297/330 (90%), Positives = 314/330 (95%)
Query: 3 KNPLRVLVTGAAGQIGYALVPMIARGIMLGPDQPVILHMLDIEPAAEALNGVKMELIDAA 62
K+P+ VLVTGAAGQIGYALVPMIARG MLG DQPVI+HMLDIEPAAE+L GVKMELIDAA
Sbjct: 5 KDPITVLVTGAAGQIGYALVPMIARGAMLGLDQPVIIHMLDIEPAAESLKGVKMELIDAA 64
Query: 63 FPLLKGVVATTDVVEACKDVNIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEKHAA 122
FPLLK VVATT+VVEACK VN+AVMVGGFPRKEGMERKDVM+KNVSIYKAQASALE+HAA
Sbjct: 65 FPLLKDVVATTNVVEACKGVNVAVMVGGFPRKEGMERKDVMTKNVSIYKAQASALEQHAA 124
Query: 123 PNCKVLVVANPANTNALILKEFAPSIPAKNITCLTRLDHNRAMGQISERLKVHVSDVKNV 182
P+CKVLVVANPANTNALILKEFAPS PAKNITCLTRLDHNRA+GQISE+L VHV DVKNV
Sbjct: 125 PDCKVLVVANPANTNALILKEFAPSFPAKNITCLTRLDHNRALGQISEKLNVHVGDVKNV 184
Query: 183 IIWGNHSSTQYPDVNHATVTTSKGEKPVREAVADDNWLNTEFITTVQQRGAAIIKARKLS 242
IWGNHSSTQYPDVNHATV T+ GEKPVRE VA+D WLNTEFITTVQQRGAAIIKARKLS
Sbjct: 185 AIWGNHSSTQYPDVNHATVKTAAGEKPVRELVANDQWLNTEFITTVQQRGAAIIKARKLS 244
Query: 243 SALSAASSACDHIRDWVLGTPKGTWVSMGVYSDGSYGIPEGLIYSFPVTCEKGEWSIVKG 302
SALSAASSACDHI DWVLGTPKGTWVSMGVYSDGSYGIP GLIYSFPVTCEKGEWSIV+G
Sbjct: 245 SALSAASSACDHIHDWVLGTPKGTWVSMGVYSDGSYGIPAGLIYSFPVTCEKGEWSIVQG 304
Query: 303 LKVDEFSRAKMDATAEELAEEKTLAYSCLN 332
LK+DEFSRAKMDATA+ELAEEK+LAYSCLN
Sbjct: 305 LKIDEFSRAKMDATAKELAEEKSLAYSCLN 334
|
Source: Solanum lycopersicum Species: Solanum lycopersicum Genus: Solanum Family: Solanaceae Order: Solanales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224063661|ref|XP_002301252.1| predicted protein [Populus trichocarpa] gi|222842978|gb|EEE80525.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 599 bits (1545), Expect = e-169, Method: Compositional matrix adjust.
Identities = 293/332 (88%), Positives = 315/332 (94%)
Query: 1 MAKNPLRVLVTGAAGQIGYALVPMIARGIMLGPDQPVILHMLDIEPAAEALNGVKMELID 60
MA++ L+VLVTGAAGQIGYA+VPMIARG+MLGPDQPVILH+LDIEPAAEALNGVKMELID
Sbjct: 1 MARSSLKVLVTGAAGQIGYAIVPMIARGVMLGPDQPVILHLLDIEPAAEALNGVKMELID 60
Query: 61 AAFPLLKGVVATTDVVEACKDVNIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEKH 120
AAFPLLKGV+ATTD +EAC VNIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEKH
Sbjct: 61 AAFPLLKGVIATTDPIEACMGVNIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEKH 120
Query: 121 AAPNCKVLVVANPANTNALILKEFAPSIPAKNITCLTRLDHNRAMGQISERLKVHVSDVK 180
AA +CKVLV+ANPANTNALILKEFAPSIP KNITCLTRLDHNRA+GQISE L V VSDVK
Sbjct: 121 AAEDCKVLVIANPANTNALILKEFAPSIPEKNITCLTRLDHNRALGQISESLDVQVSDVK 180
Query: 181 NVIIWGNHSSTQYPDVNHATVTTSKGEKPVREAVADDNWLNTEFITTVQQRGAAIIKARK 240
NVIIWGNHSSTQYPDVNHATV TS GEKPVRE V+DD WLN EFITTVQQRGAA+IKARK
Sbjct: 181 NVIIWGNHSSTQYPDVNHATVQTSSGEKPVRELVSDDKWLNAEFITTVQQRGAAVIKARK 240
Query: 241 LSSALSAASSACDHIRDWVLGTPKGTWVSMGVYSDGSYGIPEGLIYSFPVTCEKGEWSIV 300
LSSALSAAS+ACDHIRDWVLGTP+GTWVSMGVYSDGSYGI GL+YSFPVTCEKG+WSIV
Sbjct: 241 LSSALSAASAACDHIRDWVLGTPEGTWVSMGVYSDGSYGIQPGLVYSFPVTCEKGKWSIV 300
Query: 301 KGLKVDEFSRAKMDATAEELAEEKTLAYSCLN 332
+GLK+D+FSRAKMDATA+EL EEK+LAYSCLN
Sbjct: 301 QGLKIDDFSRAKMDATAKELVEEKSLAYSCLN 332
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|162464321|ref|NP_001105603.1| malate dehydrogenase, cytoplasmic [Zea mays] gi|18202485|sp|Q08062.2|MDHC_MAIZE RecName: Full=Malate dehydrogenase, cytoplasmic gi|2286153|gb|AAB64290.1| cytoplasmic malate dehydrogenase [Zea mays] gi|238006868|gb|ACR34469.1| unknown [Zea mays] gi|414871066|tpg|DAA49623.1| TPA: malate dehydrogenase4 [Zea mays] | Back alignment and taxonomy information |
|---|
Score = 598 bits (1543), Expect = e-169, Method: Compositional matrix adjust.
Identities = 294/331 (88%), Positives = 309/331 (93%)
Query: 1 MAKNPLRVLVTGAAGQIGYALVPMIARGIMLGPDQPVILHMLDIEPAAEALNGVKMELID 60
MAK P+RVLVTGAAGQIGYALVPMIARG+MLG DQPVILHMLDI PAAEALNGVKMEL+D
Sbjct: 1 MAKEPMRVLVTGAAGQIGYALVPMIARGVMLGADQPVILHMLDIPPAAEALNGVKMELVD 60
Query: 61 AAFPLLKGVVATTDVVEACKDVNIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEKH 120
AAFPLLKGVVATTDVVEAC VN+AVMVGGFPRKEGMERKDVMSKNVSIYK+QASALE H
Sbjct: 61 AAFPLLKGVVATTDVVEACTGVNVAVMVGGFPRKEGMERKDVMSKNVSIYKSQASALEAH 120
Query: 121 AAPNCKVLVVANPANTNALILKEFAPSIPAKNITCLTRLDHNRAMGQISERLKVHVSDVK 180
AAPNCKVLVVANPANTNALILKEFAPSIP KN+TCLTRLDHNRA+GQISERL V VSDVK
Sbjct: 121 AAPNCKVLVVANPANTNALILKEFAPSIPEKNVTCLTRLDHNRALGQISERLNVQVSDVK 180
Query: 181 NVIIWGNHSSTQYPDVNHATVTTSKGEKPVREAVADDNWLNTEFITTVQQRGAAIIKARK 240
NVIIWGNHSS+QYPDVNHATV TS GEKPVRE V+DD WLN EFITTVQQRGAAIIKARK
Sbjct: 181 NVIIWGNHSSSQYPDVNHATVKTSTGEKPVRELVSDDEWLNGEFITTVQQRGAAIIKARK 240
Query: 241 LSSALSAASSACDHIRDWVLGTPKGTWVSMGVYSDGSYGIPEGLIYSFPVTCEKGEWSIV 300
SSALSAASSACDHIRDWVLGTP+GT+VSMGVYSDGSYG+P GLIYSFPVTC GEW IV
Sbjct: 241 FSSALSAASSACDHIRDWVLGTPEGTFVSMGVYSDGSYGVPSGLIYSFPVTCSGGEWKIV 300
Query: 301 KGLKVDEFSRAKMDATAEELAEEKTLAYSCL 331
+GL +DEFSR KMDATA+EL EEKTLAYSCL
Sbjct: 301 QGLPIDEFSRKKMDATAQELTEEKTLAYSCL 331
|
Source: Zea mays Species: Zea mays Genus: Zea Family: Poaceae Order: Poales Class: Liliopsida Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|187235712|gb|ACD02021.1| cytoplasmic malate dehydrogennase [Zea mays] | Back alignment and taxonomy information |
|---|
Score = 597 bits (1538), Expect = e-168, Method: Compositional matrix adjust.
Identities = 293/331 (88%), Positives = 309/331 (93%)
Query: 1 MAKNPLRVLVTGAAGQIGYALVPMIARGIMLGPDQPVILHMLDIEPAAEALNGVKMELID 60
MAK P+RVLVTGAAGQIGYALVPMIARG+MLG DQPVILHMLDI PAAEALNGVKMEL+D
Sbjct: 1 MAKEPMRVLVTGAAGQIGYALVPMIARGVMLGADQPVILHMLDIPPAAEALNGVKMELVD 60
Query: 61 AAFPLLKGVVATTDVVEACKDVNIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEKH 120
AAFPLLKGVVATTDVVEAC VN+AVMVGGFPRKEGMERKDVMSKNVSIYK+QASALE H
Sbjct: 61 AAFPLLKGVVATTDVVEACTGVNVAVMVGGFPRKEGMERKDVMSKNVSIYKSQASALEAH 120
Query: 121 AAPNCKVLVVANPANTNALILKEFAPSIPAKNITCLTRLDHNRAMGQISERLKVHVSDVK 180
AAPNCKVLVVANPANTNALILKEFAPSIP KN+TCLTRLDHNRA+GQISERL V VSDVK
Sbjct: 121 AAPNCKVLVVANPANTNALILKEFAPSIPEKNVTCLTRLDHNRALGQISERLNVQVSDVK 180
Query: 181 NVIIWGNHSSTQYPDVNHATVTTSKGEKPVREAVADDNWLNTEFITTVQQRGAAIIKARK 240
NVIIWGNHSS+QYPDVNHATV TS GEKPVRE V+DD WLN EFITTVQQRGAAIIKARK
Sbjct: 181 NVIIWGNHSSSQYPDVNHATVETSTGEKPVRELVSDDEWLNGEFITTVQQRGAAIIKARK 240
Query: 241 LSSALSAASSACDHIRDWVLGTPKGTWVSMGVYSDGSYGIPEGLIYSFPVTCEKGEWSIV 300
SSALSAASSACD+IRDWVLGTP+GT+VSMGVYSDGSYG+P GLIYSFPVTC GEW IV
Sbjct: 241 FSSALSAASSACDYIRDWVLGTPEGTFVSMGVYSDGSYGVPSGLIYSFPVTCSGGEWKIV 300
Query: 301 KGLKVDEFSRAKMDATAEELAEEKTLAYSCL 331
+GL +DEFSR KMDATA+EL EEKTLAYSCL
Sbjct: 301 QGLPIDEFSRKKMDATAQELTEEKTLAYSCL 331
|
Source: Zea mays Species: Zea mays Genus: Zea Family: Poaceae Order: Poales Class: Liliopsida Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|226503019|ref|NP_001147160.1| malate dehydrogenase, cytoplasmic [Zea mays] gi|195607842|gb|ACG25751.1| malate dehydrogenase, cytoplasmic [Zea mays] | Back alignment and taxonomy information |
|---|
Score = 596 bits (1537), Expect = e-168, Method: Compositional matrix adjust.
Identities = 293/331 (88%), Positives = 308/331 (93%)
Query: 1 MAKNPLRVLVTGAAGQIGYALVPMIARGIMLGPDQPVILHMLDIEPAAEALNGVKMELID 60
MAK P+RVLVTGAAGQIGYALVPMIARG+MLG DQPVILHMLDI PAAEALNGVKMEL+D
Sbjct: 1 MAKEPMRVLVTGAAGQIGYALVPMIARGVMLGADQPVILHMLDIPPAAEALNGVKMELVD 60
Query: 61 AAFPLLKGVVATTDVVEACKDVNIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEKH 120
AAFPLLKGVVATTDVVEAC VN+AVMVGGFPRKEGMERKDVMSKNVSIYK QASALE H
Sbjct: 61 AAFPLLKGVVATTDVVEACTGVNVAVMVGGFPRKEGMERKDVMSKNVSIYKTQASALEAH 120
Query: 121 AAPNCKVLVVANPANTNALILKEFAPSIPAKNITCLTRLDHNRAMGQISERLKVHVSDVK 180
AAPNCKVLVVANPANTNALILKEFAPSIP +N+TCLTRLDHNRA+GQISERL V VSDVK
Sbjct: 121 AAPNCKVLVVANPANTNALILKEFAPSIPDRNVTCLTRLDHNRALGQISERLSVQVSDVK 180
Query: 181 NVIIWGNHSSTQYPDVNHATVTTSKGEKPVREAVADDNWLNTEFITTVQQRGAAIIKARK 240
NVIIWGNHSSTQYPDVNHATV TS GEKPVRE VADD WLN EFITTVQQRGAAIIKARK
Sbjct: 181 NVIIWGNHSSTQYPDVNHATVKTSTGEKPVRELVADDEWLNGEFITTVQQRGAAIIKARK 240
Query: 241 LSSALSAASSACDHIRDWVLGTPKGTWVSMGVYSDGSYGIPEGLIYSFPVTCEKGEWSIV 300
SSALSAASSACDHIRDWVLGTP+GT+VSMGVYSDGSYG+P GLIYSFPVTC GEW IV
Sbjct: 241 FSSALSAASSACDHIRDWVLGTPEGTFVSMGVYSDGSYGVPSGLIYSFPVTCSGGEWKIV 300
Query: 301 KGLKVDEFSRAKMDATAEELAEEKTLAYSCL 331
+GL +DE SR KMDATA+EL+EEK+LAYSCL
Sbjct: 301 QGLPIDELSRKKMDATAQELSEEKSLAYSCL 331
|
Source: Zea mays Species: Zea mays Genus: Zea Family: Poaceae Order: Poales Class: Liliopsida Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 332 | ||||||
| TAIR|locus:2018244 | 332 | c-NAD-MDH1 "cytosolic-NAD-depe | 1.0 | 1.0 | 0.807 | 7.8e-142 | |
| TAIR|locus:2176441 | 332 | c-NAD-MDH2 "cytosolic-NAD-depe | 1.0 | 1.0 | 0.807 | 7.8e-142 | |
| TAIR|locus:2165066 | 339 | c-NAD-MDH3 "cytosolic-NAD-depe | 0.993 | 0.973 | 0.718 | 3.1e-131 | |
| UNIPROTKB|P11708 | 334 | MDH1 "Malate dehydrogenase, cy | 0.933 | 0.928 | 0.585 | 2.7e-93 | |
| UNIPROTKB|Q3T145 | 334 | MDH1 "Malate dehydrogenase, cy | 0.933 | 0.928 | 0.581 | 7e-93 | |
| UNIPROTKB|P40925 | 334 | MDH1 "Malate dehydrogenase, cy | 0.933 | 0.928 | 0.578 | 9e-93 | |
| MGI|MGI:97051 | 334 | Mdh1 "malate dehydrogenase 1, | 0.933 | 0.928 | 0.585 | 6.3e-92 | |
| RGD|3072 | 334 | Mdh1 "malate dehydrogenase 1, | 0.933 | 0.928 | 0.585 | 6.3e-92 | |
| UNIPROTKB|E2QV08 | 348 | MDH1 "Malate dehydrogenase" [C | 0.933 | 0.890 | 0.572 | 1e-91 | |
| ZFIN|ZDB-GENE-040204-1 | 333 | mdh1a "malate dehydrogenase 1a | 0.942 | 0.939 | 0.568 | 1.3e-91 |
| TAIR|locus:2018244 c-NAD-MDH1 "cytosolic-NAD-dependent malate dehydrogenase 1" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1387 (493.3 bits), Expect = 7.8e-142, P = 7.8e-142
Identities = 268/332 (80%), Positives = 284/332 (85%)
Query: 1 MAKNPLRVLVTGAAGQIGYALVPMIARGIMLGPDQPVILHMLDIEPAAEALNGVKMELID 60
MAK P+RVLVTGAAGQIGYALVPMIARGIMLG DQPVILHMLDI PAAEALNGVKMELID
Sbjct: 1 MAKEPVRVLVTGAAGQIGYALVPMIARGIMLGADQPVILHMLDIPPAAEALNGVKMELID 60
Query: 61 AAFPLLKGVVATTDVVEACKDVNIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEKH 120
AAFPLLKGVVATTD VE C VN+AVMVGGFPRKEGMERKDVMSKNVSIYK+QA+ALEKH
Sbjct: 61 AAFPLLKGVVATTDAVEGCTGVNVAVMVGGFPRKEGMERKDVMSKNVSIYKSQAAALEKH 120
Query: 121 AAPNCKVLVVANPANTNALILKEFAPSIPAKNITCLTRLDHNRAMGQISERLKVHVSDVK 180
AAPNCKVLVVANPANTNALILKEFAPSIP KNI+CLTRLDHNRA+GQISERL V VSDVK
Sbjct: 121 AAPNCKVLVVANPANTNALILKEFAPSIPEKNISCLTRLDHNRALGQISERLSVPVSDVK 180
Query: 181 NVIIWGNHSSTQYPDVNHATVTTSKGEKPVREAVADDNWLNTEFITTVQQRGAAIIKARK 240
NVIIWGNHSS+QYPDVNHA V TS GEKPVRE V DD WL+ EFI+TVQQRGAAIIKARK
Sbjct: 181 NVIIWGNHSSSQYPDVNHAKVQTSSGEKPVRELVKDDAWLDGEFISTVQQRGAAIIKARK 240
Query: 241 XXXXXXXXXXXCDHIRDWVLGTPKGTWVSMGVYSDGSYGIPEGLIYSFPVTCEKGEWSIV 300
CDHIRDWVLGTP+GT+VSMGVYSDGSY +P GLIYSFPVTC G+WSIV
Sbjct: 241 LSSALSAASSACDHIRDWVLGTPEGTFVSMGVYSDGSYSVPSGLIYSFPVTCRNGDWSIV 300
Query: 301 KGLKVDEFSRAKMDXXXXXXXXXXXXXYSCLN 332
+GL +DE SR KMD YSCL+
Sbjct: 301 QGLPIDEVSRKKMDLTAEELKEEKDLAYSCLS 332
|
|
| TAIR|locus:2176441 c-NAD-MDH2 "cytosolic-NAD-dependent malate dehydrogenase 2" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1387 (493.3 bits), Expect = 7.8e-142, P = 7.8e-142
Identities = 268/332 (80%), Positives = 285/332 (85%)
Query: 1 MAKNPLRVLVTGAAGQIGYALVPMIARGIMLGPDQPVILHMLDIEPAAEALNGVKMELID 60
MAK P+RVLVTGAAGQIGYALVPMIARGIMLG DQPVILHMLDI AAEALNGVKMEL+D
Sbjct: 1 MAKEPVRVLVTGAAGQIGYALVPMIARGIMLGADQPVILHMLDIPFAAEALNGVKMELVD 60
Query: 61 AAFPLLKGVVATTDVVEACKDVNIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEKH 120
AAFPLLKGVVATTD VEAC VN+AVMVGGFPRKEGMERKDVMSKNVSIYK+QASALEKH
Sbjct: 61 AAFPLLKGVVATTDAVEACTGVNVAVMVGGFPRKEGMERKDVMSKNVSIYKSQASALEKH 120
Query: 121 AAPNCKVLVVANPANTNALILKEFAPSIPAKNITCLTRLDHNRAMGQISERLKVHVSDVK 180
AAPNCKVLVVANPANTNALILKEFAPSIP KNITCLTRLDHNRA+GQ+SERL V VSDVK
Sbjct: 121 AAPNCKVLVVANPANTNALILKEFAPSIPEKNITCLTRLDHNRALGQVSERLSVPVSDVK 180
Query: 181 NVIIWGNHSSTQYPDVNHATVTTSKGEKPVREAVADDNWLNTEFITTVQQRGAAIIKARK 240
NVIIWGNHSSTQYPDVNHATV TS GEKPVRE V +D WLN EFI+TVQQRGAAIIKARK
Sbjct: 181 NVIIWGNHSSTQYPDVNHATVKTSVGEKPVRELVKNDEWLNGEFISTVQQRGAAIIKARK 240
Query: 241 XXXXXXXXXXXCDHIRDWVLGTPKGTWVSMGVYSDGSYGIPEGLIYSFPVTCEKGEWSIV 300
CDHIRDWV+GTP+GT+VSMGVYSDGSY +P GLIYSFPVTC GEW+IV
Sbjct: 241 LSSALSAASSACDHIRDWVVGTPEGTFVSMGVYSDGSYNVPAGLIYSFPVTCRNGEWTIV 300
Query: 301 KGLKVDEFSRAKMDXXXXXXXXXXXXXYSCLN 332
+GL +D+ SR KMD YSCL+
Sbjct: 301 QGLPIDDASRKKMDLTAEELKEEKDLAYSCLS 332
|
|
| TAIR|locus:2165066 c-NAD-MDH3 "cytosolic-NAD-dependent malate dehydrogenase 3" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1287 (458.1 bits), Expect = 3.1e-131, P = 3.1e-131
Identities = 237/330 (71%), Positives = 272/330 (82%)
Query: 3 KNPLRVLVTGAAGQIGYALVPMIARGIMLGPDQPVILHMLDIEPAAEALNGVKMELIDAA 62
K+P+RVL+TGAAG IGYA+ PMIARGIMLGPDQP+ILH+LDIEPA+ +L VKMEL D+A
Sbjct: 9 KDPIRVLITGAAGNIGYAIAPMIARGIMLGPDQPMILHLLDIEPASSSLEAVKMELQDSA 68
Query: 63 FPLLKGVVATTDVVEACKDVNIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEKHAA 122
FPLLKGV+ATT+VVEACKDVNI +M+GGFPR GMERKDVMSKNV IYKAQASALE++A+
Sbjct: 69 FPLLKGVIATTNVVEACKDVNIVIMIGGFPRIAGMERKDVMSKNVVIYKAQASALERYAS 128
Query: 123 PNCKVLVVANPANTNALILKEFAPSIPAKNITCLTRLDHNRAMGQISERLKVHVSDVKNV 182
+CKVLVVANPANTNALILKEFAPSIP +NITCLTRLDHNRA+ Q++++L V VS VKNV
Sbjct: 129 DDCKVLVVANPANTNALILKEFAPSIPEENITCLTRLDHNRALAQLADKLSVPVSSVKNV 188
Query: 183 IIWGNHSSTQYPDVNHATVTTSKGEKPVREAVADDNWLNTEFITTVQQRGAAIIKARKXX 242
I+WGNHSSTQYPD NHATV+T G++P++E V D NWL EFI VQQRGAA+++ARK
Sbjct: 189 IVWGNHSSTQYPDTNHATVSTKTGDRPLKELVTDHNWLKNEFIVEVQQRGAAVLRARKQS 248
Query: 243 XXXXXXXXXCDHIRDWVLGTPKGTWVSMGVYSDGSYGIPEGLIYSFPVTCEKGEWSIVKG 302
CDHIRDW LGTPKGTWVSMGV SDGSYGIP GL+YSFPV CEKG W IV+G
Sbjct: 249 SAFSAAGAACDHIRDWFLGTPKGTWVSMGVCSDGSYGIPPGLVYSFPVICEKGSWKIVQG 308
Query: 303 LKVDEFSRAKMDXXXXXXXXXXXXXYSCLN 332
L +DEFSR KMD YSCLN
Sbjct: 309 LSIDEFSREKMDDSARELAEEKDLAYSCLN 338
|
|
| UNIPROTKB|P11708 MDH1 "Malate dehydrogenase, cytoplasmic" [Sus scrofa (taxid:9823)] | Back alignment and assigned GO terms |
|---|
Score = 929 (332.1 bits), Expect = 2.7e-93, P = 2.7e-93
Identities = 182/311 (58%), Positives = 224/311 (72%)
Query: 5 PLRVLVTGAAGQIGYALVPMIARGIMLGPDQPVILHMLDIEPAAEALNGVKMELIDAAFP 64
P+RVLVTGAAGQI Y+L+ I G + G DQP+IL +LDI P L+GV MEL D A P
Sbjct: 4 PIRVLVTGAAGQIAYSLLYSIGNGSVFGKDQPIILVLLDITPMMGVLDGVLMELQDCALP 63
Query: 65 LLKGVVATTDVVEACKDVNIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEKHAAPN 124
LLK V+AT A KD+++A++VG PR++GMERKD++ NV I+K Q +AL+K+A +
Sbjct: 64 LLKDVIATDKEEIAFKDLDVAILVGSMPRRDGMERKDLLKANVKIFKCQGAALDKYAKKS 123
Query: 125 CKVLVVANPANTNALILKEFAPSIPAKNITCLTRLDHNRAMGQISERLKVHVSDVKNVII 184
KV+VV NPANTN L + APSIP +N +CLTRLDHNRA QI+ +L V DVKNVII
Sbjct: 124 VKVIVVGNPANTNCLTASKSAPSIPKENFSCLTRLDHNRAKAQIALKLGVTSDDVKNVII 183
Query: 185 WGNHSSTQYPDVNHATVTTSKGEKPVREAVADDNWLNTEFITTVQQRGAAIIKARKXXXX 244
WGNHSSTQYPDVNHA V E V EAV DD+WL EFITTVQQRGAA+IKARK
Sbjct: 184 WGNHSSTQYPDVNHAKVKLQAKEVGVYEAVKDDSWLKGEFITTVQQRGAAVIKARKLSSA 243
Query: 245 XXXXXXXCDHIRDWVLGTPKGTWVSMGVYSDG-SYGIPEGLIYSFPVTCEKGEWSIVKGL 303
CDH+RD GTP+G +VSMG+ SDG SYG+P+ L+YSFPVT + W IV+GL
Sbjct: 244 MSAAKAICDHVRDIWFGTPEGEFVSMGIISDGNSYGVPDDLLYSFPVTIKDKTWKIVEGL 303
Query: 304 KVDEFSRAKMD 314
+++FSR KMD
Sbjct: 304 PINDFSREKMD 314
|
|
| UNIPROTKB|Q3T145 MDH1 "Malate dehydrogenase, cytoplasmic" [Bos taurus (taxid:9913)] | Back alignment and assigned GO terms |
|---|
Score = 925 (330.7 bits), Expect = 7.0e-93, P = 7.0e-93
Identities = 181/311 (58%), Positives = 224/311 (72%)
Query: 5 PLRVLVTGAAGQIGYALVPMIARGIMLGPDQPVILHMLDIEPAAEALNGVKMELIDAAFP 64
P+RVLVTGAAGQI Y+L+ I G + G DQP+IL +LDI P L+GV MEL D A P
Sbjct: 4 PIRVLVTGAAGQIAYSLLYSIGNGSVFGKDQPIILVLLDITPMMGVLDGVLMELQDCALP 63
Query: 65 LLKGVVATTDVVEACKDVNIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEKHAAPN 124
LLK V+AT A KD+++A++VG PR++GMERKD++ NV I+K Q +AL+K+A +
Sbjct: 64 LLKDVIATDKEEIAFKDLDVAILVGSMPRRDGMERKDLLKANVKIFKCQGAALDKYAKKS 123
Query: 125 CKVLVVANPANTNALILKEFAPSIPAKNITCLTRLDHNRAMGQISERLKVHVSDVKNVII 184
KV+VV NPANTN L + APSIP +N +CLTRLDHNRA QI+ +L V DVKNVII
Sbjct: 124 VKVIVVGNPANTNCLTASKSAPSIPKENFSCLTRLDHNRAKAQIALKLGVTSDDVKNVII 183
Query: 185 WGNHSSTQYPDVNHATVTTSKGEKPVREAVADDNWLNTEFITTVQQRGAAIIKARKXXXX 244
WGNHSSTQYPDVNHA V E V EA+ DD+WL EFITTVQQRGAA+IKARK
Sbjct: 184 WGNHSSTQYPDVNHAKVKLQGKEVGVYEALKDDSWLKGEFITTVQQRGAAVIKARKLSSA 243
Query: 245 XXXXXXXCDHIRDWVLGTPKGTWVSMGVYSDG-SYGIPEGLIYSFPVTCEKGEWSIVKGL 303
CDH+RD GTP+G +VSMG+ SDG SYGIP+ L+YSFPVT + W +V+GL
Sbjct: 244 MSAAKAICDHVRDIWFGTPEGEFVSMGIISDGNSYGIPDDLLYSFPVTIKDKTWKVVEGL 303
Query: 304 KVDEFSRAKMD 314
+++FSR KMD
Sbjct: 304 PINDFSREKMD 314
|
|
| UNIPROTKB|P40925 MDH1 "Malate dehydrogenase, cytoplasmic" [Homo sapiens (taxid:9606)] | Back alignment and assigned GO terms |
|---|
Score = 924 (330.3 bits), Expect = 9.0e-93, P = 9.0e-93
Identities = 180/311 (57%), Positives = 224/311 (72%)
Query: 5 PLRVLVTGAAGQIGYALVPMIARGIMLGPDQPVILHMLDIEPAAEALNGVKMELIDAAFP 64
P+RVLVTGAAGQI Y+L+ I G + G DQP+IL +LDI P L+GV MEL D A P
Sbjct: 4 PIRVLVTGAAGQIAYSLLYSIGNGSVFGKDQPIILVLLDITPMMGVLDGVLMELQDCALP 63
Query: 65 LLKGVVATTDVVEACKDVNIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEKHAAPN 124
LLK V+AT A KD+++A++VG PR+EGMERKD++ NV I+K+Q +AL+K+A +
Sbjct: 64 LLKDVIATDKEDVAFKDLDVAILVGSMPRREGMERKDLLKANVKIFKSQGAALDKYAKKS 123
Query: 125 CKVLVVANPANTNALILKEFAPSIPAKNITCLTRLDHNRAMGQISERLKVHVSDVKNVII 184
KV+VV NPANTN L + APSIP +N +CLTRLDHNRA QI+ +L V +DVKNVII
Sbjct: 124 VKVIVVGNPANTNCLTASKSAPSIPKENFSCLTRLDHNRAKAQIALKLGVTANDVKNVII 183
Query: 185 WGNHSSTQYPDVNHATVTTSKGEKPVREAVADDNWLNTEFITTVQQRGAAIIKARKXXXX 244
WGNHSSTQYPDVNHA V E V EA+ DD+WL EF+TTVQQRGAA+IKARK
Sbjct: 184 WGNHSSTQYPDVNHAKVKLQGKEVGVYEALKDDSWLKGEFVTTVQQRGAAVIKARKLSSA 243
Query: 245 XXXXXXXCDHIRDWVLGTPKGTWVSMGVYSDG-SYGIPEGLIYSFPVTCEKGEWSIVKGL 303
CDH+RD GTP+G +VSMGV SDG SYG+P+ L+YSFPV + W V+GL
Sbjct: 244 MSAAKAICDHVRDIWFGTPEGEFVSMGVISDGNSYGVPDDLLYSFPVVIKNKTWKFVEGL 303
Query: 304 KVDEFSRAKMD 314
+++FSR KMD
Sbjct: 304 PINDFSREKMD 314
|
|
| MGI|MGI:97051 Mdh1 "malate dehydrogenase 1, NAD (soluble)" [Mus musculus (taxid:10090)] | Back alignment and assigned GO terms |
|---|
Score = 916 (327.5 bits), Expect = 6.3e-92, P = 6.3e-92
Identities = 182/311 (58%), Positives = 222/311 (71%)
Query: 5 PLRVLVTGAAGQIGYALVPMIARGIMLGPDQPVILHMLDIEPAAEALNGVKMELIDAAFP 64
P+RVLVTGAAGQI Y+L+ I G + G DQP+IL +LDI P L+GV MEL D A P
Sbjct: 4 PIRVLVTGAAGQIAYSLLYSIGNGSVFGKDQPIILVLLDITPMMGVLDGVLMELQDCALP 63
Query: 65 LLKGVVATTDVVEACKDVNIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEKHAAPN 124
LL+ V+AT A KD+++AV+VG PR+EGMERKD++ NV I+K+Q +ALEK+A +
Sbjct: 64 LLQDVIATDKEEIAFKDLDVAVLVGSMPRREGMERKDLLKANVKIFKSQGTALEKYAKKS 123
Query: 125 CKVLVVANPANTNALILKEFAPSIPAKNITCLTRLDHNRAMGQISERLKVHVSDVKNVII 184
KV+VV NPANTN L + APSIP +N +CLTRLDHNRA QI+ +L V DVKNVII
Sbjct: 124 VKVIVVGNPANTNCLTASKSAPSIPKENFSCLTRLDHNRAKSQIALKLGVTADDVKNVII 183
Query: 185 WGNHSSTQYPDVNHATVTTSKGEKPVREAVADDNWLNTEFITTVQQRGAAIIKARKXXXX 244
WGNHSSTQYPDVNHA V E V EA+ DD+WL EFITTVQQRGAA+IKARK
Sbjct: 184 WGNHSSTQYPDVNHAKVKLQGKEVGVYEALKDDSWLKGEFITTVQQRGAAVIKARKLSSA 243
Query: 245 XXXXXXXCDHIRDWVLGTPKGTWVSMGVYSDG-SYGIPEGLIYSFPVTCEKGEWSIVKGL 303
DHIRD GTP+G +VSMGV SDG SYG+P+ L+YSFPV + W V+GL
Sbjct: 244 MSAAKAIADHIRDIWFGTPEGEFVSMGVISDGNSYGVPDDLLYSFPVVIKNKTWKFVEGL 303
Query: 304 KVDEFSRAKMD 314
+++FSR KMD
Sbjct: 304 PINDFSREKMD 314
|
|
| RGD|3072 Mdh1 "malate dehydrogenase 1, NAD (soluble)" [Rattus norvegicus (taxid:10116)] | Back alignment and assigned GO terms |
|---|
Score = 916 (327.5 bits), Expect = 6.3e-92, P = 6.3e-92
Identities = 182/311 (58%), Positives = 222/311 (71%)
Query: 5 PLRVLVTGAAGQIGYALVPMIARGIMLGPDQPVILHMLDIEPAAEALNGVKMELIDAAFP 64
P+RVLVTGAAGQI Y+L+ I G + G DQP+IL +LDI P L+GV MEL D A P
Sbjct: 4 PIRVLVTGAAGQIAYSLLYSIGNGSVFGKDQPIILVLLDITPMMGVLDGVLMELQDCALP 63
Query: 65 LLKGVVATTDVVEACKDVNIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEKHAAPN 124
LL+ V+AT A KD+++AV+VG PR+EGMERKD++ NV I+K+Q +ALEK+A +
Sbjct: 64 LLQDVIATDKEEVAFKDLDVAVLVGSMPRREGMERKDLLKANVKIFKSQGAALEKYAKKS 123
Query: 125 CKVLVVANPANTNALILKEFAPSIPAKNITCLTRLDHNRAMGQISERLKVHVSDVKNVII 184
KV+VV NPANTN L + APSIP +N +CLTRLDHNRA QI+ +L V DVKNVII
Sbjct: 124 VKVIVVGNPANTNCLTASKSAPSIPKENFSCLTRLDHNRAKSQIALKLGVTADDVKNVII 183
Query: 185 WGNHSSTQYPDVNHATVTTSKGEKPVREAVADDNWLNTEFITTVQQRGAAIIKARKXXXX 244
WGNHSSTQYPDVNHA V E V EA+ DD+WL EFITTVQQRGAA+IKARK
Sbjct: 184 WGNHSSTQYPDVNHAKVKLQGKEVGVYEALKDDSWLKGEFITTVQQRGAAVIKARKLSSA 243
Query: 245 XXXXXXXCDHIRDWVLGTPKGTWVSMGVYSDG-SYGIPEGLIYSFPVTCEKGEWSIVKGL 303
DHIRD GTP+G +VSMGV SDG SYG+P+ L+YSFPV + W V+GL
Sbjct: 244 MSAAKAISDHIRDIWFGTPEGEFVSMGVISDGNSYGVPDDLLYSFPVVIKNKTWKFVEGL 303
Query: 304 KVDEFSRAKMD 314
+++FSR KMD
Sbjct: 304 PINDFSREKMD 314
|
|
| UNIPROTKB|E2QV08 MDH1 "Malate dehydrogenase" [Canis lupus familiaris (taxid:9615)] | Back alignment and assigned GO terms |
|---|
Score = 914 (326.8 bits), Expect = 1.0e-91, P = 1.0e-91
Identities = 178/311 (57%), Positives = 224/311 (72%)
Query: 5 PLRVLVTGAAGQIGYALVPMIARGIMLGPDQPVILHMLDIEPAAEALNGVKMELIDAAFP 64
P+RVLVTGAAGQI Y+L+ I G + G DQP+IL +LDI P L+GV MEL D A P
Sbjct: 18 PIRVLVTGAAGQIAYSLLYSIGNGSVFGKDQPIILVLLDITPMMGVLDGVLMELQDCALP 77
Query: 65 LLKGVVATTDVVEACKDVNIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEKHAAPN 124
LLK V+AT A KD+++A++VG PR++GMERKD++ NV I+K Q +ALEK+A +
Sbjct: 78 LLKDVIATDKEDVAFKDLDVAILVGSMPRRDGMERKDLLKANVKIFKCQGAALEKYAKKS 137
Query: 125 CKVLVVANPANTNALILKEFAPSIPAKNITCLTRLDHNRAMGQISERLKVHVSDVKNVII 184
KV+VV NPANTN L + APSIP +N +CLTRLDHNRA QI+ +L V DVKNVII
Sbjct: 138 VKVIVVGNPANTNCLTASKSAPSIPKENFSCLTRLDHNRAKAQIALKLGVTSDDVKNVII 197
Query: 185 WGNHSSTQYPDVNHATVTTSKGEKPVREAVADDNWLNTEFITTVQQRGAAIIKARKXXXX 244
WGNHSSTQYPDV+HA V E V +A+ D++WL EFITTVQQRGAA+IKARK
Sbjct: 198 WGNHSSTQYPDVSHAKVKLQGKEVGVYDALKDESWLKGEFITTVQQRGAAVIKARKLSSA 257
Query: 245 XXXXXXXCDHIRDWVLGTPKGTWVSMGVYSDGS-YGIPEGLIYSFPVTCEKGEWSIVKGL 303
CDH+RD GTP+G +VSMG+ SDG+ YG+P+ L+YSFPVT + W IV+GL
Sbjct: 258 MSAAKAICDHVRDIWFGTPEGEFVSMGIISDGNPYGVPDDLLYSFPVTIKNKTWKIVEGL 317
Query: 304 KVDEFSRAKMD 314
+++FSR KMD
Sbjct: 318 TINDFSREKMD 328
|
|
| ZFIN|ZDB-GENE-040204-1 mdh1a "malate dehydrogenase 1a, NAD (soluble)" [Danio rerio (taxid:7955)] | Back alignment and assigned GO terms |
|---|
Score = 913 (326.5 bits), Expect = 1.3e-91, P = 1.3e-91
Identities = 179/315 (56%), Positives = 223/315 (70%)
Query: 1 MAKNPLRVLVTGAAGQIGYALVPMIARGIMLGPDQPVILHMLDIEPAAEALNGVKMELID 60
MA+ P+RVLVTGAAGQI Y+L+ IA+G + G DQP+IL +LDI P L+GV MEL D
Sbjct: 1 MAE-PIRVLVTGAAGQIAYSLLYSIAKGDVFGKDQPIILVLLDITPMLPVLDGVVMELQD 59
Query: 61 AAFPLLKGVVATTDVVEACKDVNIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEKH 120
A PLL+ V+ T V KD++ A++VG PRKEGMERKD++ NV+I+K Q ALEK+
Sbjct: 60 CALPLLREVIPTDKVEVGFKDLDAAILVGSMPRKEGMERKDLLKANVAIFKTQGEALEKY 119
Query: 121 AAPNCKVLVVANPANTNALILKEFAPSIPAKNITCLTRLDHNRAMGQISERLKVHVSDVK 180
A KVLVV NPANTN LI + APSIP +N +CLTRLDHNRA Q++ R+ V VK
Sbjct: 120 AKKTVKVLVVGNPANTNCLIASKSAPSIPKENFSCLTRLDHNRARSQVAMRVGVPSDSVK 179
Query: 181 NVIIWGNHSSTQYPDVNHATVTTSKGEKPVREAVADDNWLNTEFITTVQQRGAAIIKARK 240
NV IWGNHSSTQYPDV+HA VT + E +AV D++WL +FI+TVQQRGAA+IKARK
Sbjct: 180 NVTIWGNHSSTQYPDVHHAIVTRNGKEIAAFDAVNDESWLKGDFISTVQQRGAAVIKARK 239
Query: 241 XXXXXXXXXXXCDHIRDWVLGTPKGTWVSMGVYSDG-SYGIPEGLIYSFPVTCEKGEWSI 299
CDH+RD GTP G WVSMG+YS G SYG+P+ L+YSFPV + W +
Sbjct: 240 LSSAMSAAKAICDHMRDIWFGTPDGEWVSMGIYSSGNSYGVPDDLMYSFPVKIKNKSWKV 299
Query: 300 VKGLKVDEFSRAKMD 314
V GL +++FSR KMD
Sbjct: 300 VDGLSINDFSRGKMD 314
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Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
| ID | Name | Annotated EC number | Identity | Query coverage | Hit coverage | RBH(Q2H) | RBH(H2Q) |
| A9IIS3 | MDH_BORPD | 1, ., 1, ., 1, ., 3, 7 | 0.5552 | 0.9608 | 0.9696 | yes | no |
| O48905 | MDHC_MEDSA | 1, ., 1, ., 1, ., 3, 7 | 0.8674 | 1.0 | 1.0 | N/A | no |
| A5U1T8 | MDH_MYCTA | 1, ., 1, ., 1, ., 3, 7 | 0.5384 | 0.9668 | 0.9756 | yes | no |
| Q0VQ52 | MDH_ALCBS | 1, ., 1, ., 1, ., 3, 7 | 0.5807 | 0.9548 | 0.9664 | yes | no |
| Q9RXI8 | MDH_DEIRA | 1, ., 1, ., 1, ., 3, 7 | 0.5900 | 0.9548 | 0.9606 | yes | no |
| O88989 | MDHC_RAT | 1, ., 1, ., 1, ., 3, 7 | 0.6018 | 0.9879 | 0.9820 | yes | no |
| O24047 | MDHC_MESCR | 1, ., 1, ., 1, ., 3, 7 | 0.8761 | 0.9969 | 0.9969 | N/A | no |
| Q7NZ60 | MDH_CHRVO | 1, ., 1, ., 1, ., 3, 7 | 0.5590 | 0.9548 | 0.9723 | yes | no |
| Q0ABE6 | MDH_ALHEH | 1, ., 1, ., 1, ., 3, 7 | 0.5714 | 0.9548 | 0.9723 | yes | no |
| Q21K60 | MDH_SACD2 | 1, ., 1, ., 1, ., 3, 7 | 0.5744 | 0.9759 | 0.9908 | yes | no |
| Q5ZME2 | MDHC_CHICK | 1, ., 1, ., 1, ., 3, 7 | 0.5927 | 0.9879 | 0.9820 | yes | no |
| Q6DIY9 | MDHC_XENTR | 1, ., 1, ., 1, ., 3, 7 | 0.5987 | 0.9879 | 0.9820 | yes | no |
| A1K5Q9 | MDH_AZOSB | 1, ., 1, ., 1, ., 3, 7 | 0.5504 | 0.9608 | 0.9666 | yes | no |
| A1WV94 | MDH_HALHL | 1, ., 1, ., 1, ., 3, 7 | 0.5621 | 0.9548 | 0.9723 | yes | no |
| Q1Q932 | MDH_PSYCK | 1, ., 1, ., 1, ., 3, 7 | 0.5727 | 0.9548 | 0.9635 | yes | no |
| A1KI28 | MDH_MYCBP | 1, ., 1, ., 1, ., 3, 7 | 0.5384 | 0.9668 | 0.9756 | yes | no |
| Q08062 | MDHC_MAIZE | 1, ., 1, ., 1, ., 3, 7 | 0.8882 | 0.9969 | 0.9969 | N/A | no |
| B3PHI3 | MDH_CELJU | 1, ., 1, ., 1, ., 3, 7 | 0.5683 | 0.9548 | 0.9694 | yes | no |
| P93819 | MDHC1_ARATH | 1, ., 1, ., 1, ., 3, 7 | 0.8704 | 1.0 | 1.0 | yes | no |
| P14152 | MDHC_MOUSE | 1, ., 1, ., 1, ., 3, 7 | 0.6018 | 0.9879 | 0.9820 | yes | no |
| P0A5J6 | MDH_MYCTU | 1, ., 1, ., 1, ., 3, 7 | 0.5384 | 0.9668 | 0.9756 | yes | no |
| Q47TT4 | MDH_THEFY | 1, ., 1, ., 1, ., 3, 7 | 0.5493 | 0.9638 | 0.9696 | yes | no |
| B2HRH5 | MDH_MYCMM | 1, ., 1, ., 1, ., 3, 7 | 0.5524 | 0.9638 | 0.9726 | yes | no |
| Q6PAB3 | MDHC_XENLA | 1, ., 1, ., 1, ., 3, 7 | 0.5866 | 0.9879 | 0.9820 | N/A | no |
| A5WGM2 | MDH_PSYWF | 1, ., 1, ., 1, ., 3, 7 | 0.5634 | 0.9548 | 0.9694 | yes | no |
| Q7XDC8 | MDHC_ORYSJ | 1, ., 1, ., 1, ., 3, 7 | 0.8734 | 1.0 | 1.0 | yes | no |
| C5BU70 | MDH_TERTT | 1, ., 1, ., 1, ., 3, 7 | 0.5745 | 0.9548 | 0.9694 | yes | no |
| P57106 | MDHC2_ARATH | 1, ., 1, ., 1, ., 3, 7 | 0.8704 | 1.0 | 1.0 | no | no |
| Q7YRU4 | MDHC_FELCA | 1, ., 1, ., 1, ., 3, 7 | 0.5927 | 0.9879 | 0.9820 | N/A | no |
| Q4FQU7 | MDH_PSYA2 | 1, ., 1, ., 1, ., 3, 7 | 0.5665 | 0.9548 | 0.9635 | yes | no |
| P11708 | MDHC_PIG | 1, ., 1, ., 1, ., 3, 7 | 0.6048 | 0.9879 | 0.9820 | yes | no |
| C1CY73 | MDH_DEIDV | 1, ., 1, ., 1, ., 3, 7 | 0.5776 | 0.9548 | 0.9606 | yes | no |
| P0A5J7 | MDH_MYCBO | 1, ., 1, ., 1, ., 3, 7 | 0.5384 | 0.9668 | 0.9756 | yes | no |
| Q3T145 | MDHC_BOVIN | 1, ., 1, ., 1, ., 3, 7 | 0.6036 | 0.9849 | 0.9790 | yes | no |
| P40925 | MDHC_HUMAN | 1, ., 1, ., 1, ., 3, 7 | 0.5957 | 0.9879 | 0.9820 | yes | no |
| A0QCI6 | MDH_MYCA1 | 1, ., 1, ., 1, ., 3, 7 | 0.5493 | 0.9638 | 0.9726 | yes | no |
| Q7W5Q8 | MDH_BORPA | 1, ., 1, ., 1, ., 3, 7 | 0.5613 | 0.9608 | 0.9696 | yes | no |
| Q2L068 | MDH_BORA1 | 1, ., 1, ., 1, ., 3, 7 | 0.5552 | 0.9608 | 0.9696 | yes | no |
| P61976 | MDH_MYCPA | 1, ., 1, ., 1, ., 3, 7 | 0.5524 | 0.9638 | 0.9726 | N/A | no |
| Q7WD94 | MDH_BORBR | 1, ., 1, ., 1, ., 3, 7 | 0.5613 | 0.9608 | 0.9696 | yes | no |
| Q7VW97 | MDH_BORPE | 1, ., 1, ., 1, ., 3, 7 | 0.5613 | 0.9608 | 0.9696 | yes | no |
| Q9SML8 | MDHC_BETVU | 1, ., 1, ., 1, ., 3, 7 | 0.8610 | 0.9969 | 0.9969 | N/A | no |
| Q04820 | MDHC_ECHGR | 1, ., 1, ., 1, ., 3, 7 | 0.5182 | 0.9849 | 0.9849 | N/A | no |
| A4SWW0 | MDH_POLSQ | 1, ., 1, ., 1, ., 3, 7 | 0.5521 | 0.9608 | 0.9696 | yes | no |
| Q82HS2 | MDH_STRAW | 1, ., 1, ., 1, ., 3, 7 | 0.5339 | 0.9638 | 0.9726 | yes | no |
| C1AMN4 | MDH_MYCBT | 1, ., 1, ., 1, ., 3, 7 | 0.5384 | 0.9668 | 0.9756 | yes | no |
| Q1IWC9 | MDH_DEIGD | 1, ., 1, ., 1, ., 3, 7 | 0.5822 | 0.9367 | 0.9311 | yes | no |
| Q54GE6 | MDHA_DICDI | 1, ., 1, ., 1, ., 3, 7 | 0.5679 | 0.9879 | 0.8388 | yes | no |
| Q9K3J3 | MDH_STRCO | 1, ., 1, ., 1, ., 3, 7 | 0.5432 | 0.9638 | 0.9726 | yes | no |
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
| Prediction Level | EC number | Confidence of Prediction |
| 3rd Layer | 1.1.1 | 0.998 |
| 3rd Layer | 1.1.1.37 | 0.994 |
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
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 | GSVIVG00019169001 | RecName- Full=Malate dehydrogenase; EC=1.1.1.37; (332 aa) | |||||||||
(Vitis vinifera) | |||||||||||
Predicted Functional Partners: | |||||||||||
 | GSVIVG00017898001 | SubName- Full=Chromosome chr17 scaffold_16, whole genome shotgun sequence; (565 aa) | • | • | 0.948 | ||||||
 | GSVIVG00003727001 | RecName- Full=Citrate synthase; (472 aa) | • | • | • | 0.930 | |||||
 | GSVIVG00028048001 | SubName- Full=Chromosome chr7 scaffold_42, whole genome shotgun sequence; (470 aa) | • | • | 0.930 | ||||||
 | NADP-ME | RecName- Full=Malic enzyme; (496 aa) | • | • | 0.913 | ||||||
 | VVME2 | RecName- Full=Malic enzyme; (591 aa) | • | • | 0.913 | ||||||
 | GSVIVG00026767001 | RecName- Full=Malic enzyme; (605 aa) | • | • | 0.909 | ||||||
 | GSVIVG00018984001 | RecName- Full=Malic enzyme; (625 aa) | • | • | 0.909 | ||||||
 | GSVIVG00016723001 | RecName- Full=Aspartate aminotransferase; EC=2.6.1.1; (411 aa) | • | • | 0.909 | ||||||
 | GPEPC | RecName- Full=Phosphoenolpyruvate carboxylase; EC=4.1.1.31; (965 aa) | • | • | 0.908 | ||||||
 | GSVIVG00027811001 | RecName- Full=Phosphoenolpyruvate carboxylase; EC=4.1.1.31; (963 aa) | • | • | 0.907 | ||||||
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 332 | |||
| PLN00135 | 309 | PLN00135, PLN00135, malate dehydrogenase | 0.0 | |
| cd01336 | 325 | cd01336, MDH_cytoplasmic_cytosolic, Cytoplasmic an | 0.0 | |
| TIGR01758 | 324 | TIGR01758, MDH_euk_cyt, malate dehydrogenase, NAD- | 0.0 | |
| TIGR01759 | 323 | TIGR01759, MalateDH-SF1, malate dehydrogenase | 0.0 | |
| PRK05442 | 326 | PRK05442, PRK05442, malate dehydrogenase; Provisio | 0.0 | |
| cd00704 | 323 | cd00704, MDH, Malate dehydrogenase | 0.0 | |
| cd01338 | 322 | cd01338, MDH_choloroplast_like, Chloroplast-like m | 0.0 | |
| PLN00112 | 444 | PLN00112, PLN00112, malate dehydrogenase (NADP); P | 1e-103 | |
| TIGR01757 | 387 | TIGR01757, Malate-DH_plant, malate dehydrogenase, | 1e-94 | |
| cd05295 | 452 | cd05295, MDH_like, Malate dehydrogenase-like | 9e-90 | |
| TIGR01756 | 313 | TIGR01756, LDH_protist, lactate dehydrogenase | 5e-89 | |
| COG0039 | 313 | COG0039, Mdh, Malate/lactate dehydrogenases [Energ | 9e-73 | |
| cd00650 | 263 | cd00650, LDH_MDH_like, NAD-dependent, lactate dehy | 1e-62 | |
| pfam02866 | 173 | pfam02866, Ldh_1_C, lactate/malate dehydrogenase, | 2e-49 | |
| pfam00056 | 142 | pfam00056, Ldh_1_N, lactate/malate dehydrogenase, | 7e-38 | |
| cd00300 | 300 | cd00300, LDH_like, L-lactate dehydrogenase-like en | 4e-18 | |
| cd01339 | 300 | cd01339, LDH-like_MDH, L-lactate dehydrogenase-lik | 1e-16 | |
| PRK06223 | 307 | PRK06223, PRK06223, malate dehydrogenase; Reviewed | 4e-16 | |
| PTZ00117 | 319 | PTZ00117, PTZ00117, malate dehydrogenase; Provisio | 1e-14 | |
| cd05294 | 309 | cd05294, LDH-like_MDH_nadp, A lactate dehydrogenas | 1e-13 | |
| cd05293 | 312 | cd05293, LDH_1, A subgroup of L-lactate dehydrogen | 3e-13 | |
| TIGR01763 | 305 | TIGR01763, MalateDH_bact, malate dehydrogenase, NA | 7e-13 | |
| TIGR01772 | 312 | TIGR01772, MDH_euk_gproteo, malate dehydrogenase, | 1e-12 | |
| cd01337 | 310 | cd01337, MDH_glyoxysomal_mitochondrial, Glyoxysoma | 2e-11 | |
| TIGR01771 | 299 | TIGR01771, L-LDH-NAD, L-lactate dehydrogenase | 1e-08 | |
| PLN00106 | 323 | PLN00106, PLN00106, malate dehydrogenase | 2e-08 | |
| PRK00066 | 315 | PRK00066, ldh, L-lactate dehydrogenase; Reviewed | 7e-08 | |
| PRK05086 | 312 | PRK05086, PRK05086, malate dehydrogenase; Provisio | 1e-07 | |
| PTZ00082 | 321 | PTZ00082, PTZ00082, L-lactate dehydrogenase; Provi | 2e-07 | |
| PTZ00325 | 321 | PTZ00325, PTZ00325, malate dehydrogenase; Provisio | 4e-07 | |
| PLN02602 | 350 | PLN02602, PLN02602, lactate dehydrogenase | 2e-06 | |
| cd05292 | 308 | cd05292, LDH_2, A subgroup of L-lactate dehydrogen | 3e-05 | |
| cd05291 | 306 | cd05291, HicDH_like, L-2-hydroxyisocapronate dehyd | 5e-04 |
| >gnl|CDD|177744 PLN00135, PLN00135, malate dehydrogenase | Back alignment and domain information |
|---|
Score = 669 bits (1728), Expect = 0.0
Identities = 283/309 (91%), Positives = 293/309 (94%)
Query: 24 MIARGIMLGPDQPVILHMLDIEPAAEALNGVKMELIDAAFPLLKGVVATTDVVEACKDVN 83
MIARG+MLGPDQPVILHMLDI PAAEALNGVKMELIDAAFPLLKGVVATTDVVEACK VN
Sbjct: 1 MIARGVMLGPDQPVILHMLDIPPAAEALNGVKMELIDAAFPLLKGVVATTDVVEACKGVN 60
Query: 84 IAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEKHAAPNCKVLVVANPANTNALILKE 143
IAVMVGGFPRKEGMERKDVMSKNVSIYK+QASALEKHAAP+CKVLVVANPANTNALILKE
Sbjct: 61 IAVMVGGFPRKEGMERKDVMSKNVSIYKSQASALEKHAAPDCKVLVVANPANTNALILKE 120
Query: 144 FAPSIPAKNITCLTRLDHNRAMGQISERLKVHVSDVKNVIIWGNHSSTQYPDVNHATVTT 203
FAPSIP KNITCLTRLDHNRA+GQISERL V VSDVKNVIIWGNHSSTQYPDVNHATV T
Sbjct: 121 FAPSIPEKNITCLTRLDHNRALGQISERLGVPVSDVKNVIIWGNHSSTQYPDVNHATVKT 180
Query: 204 SKGEKPVREAVADDNWLNTEFITTVQQRGAAIIKARKLSSALSAASSACDHIRDWVLGTP 263
GEKPVRE VADD WLN EFITTVQQRGAAIIKARKLSSALSAASSACDHIRDWVLGTP
Sbjct: 181 PSGEKPVRELVADDAWLNGEFITTVQQRGAAIIKARKLSSALSAASSACDHIRDWVLGTP 240
Query: 264 KGTWVSMGVYSDGSYGIPEGLIYSFPVTCEKGEWSIVKGLKVDEFSRAKMDATAEELAEE 323
+GTWVSMGVYSDGSYG+P GLIYSFPVTCEKGEWSIV+GL +DEFSR KMDATA+EL EE
Sbjct: 241 EGTWVSMGVYSDGSYGVPPGLIYSFPVTCEKGEWSIVQGLSIDEFSRKKMDATAKELKEE 300
Query: 324 KTLAYSCLN 332
K LAYSCL+
Sbjct: 301 KELAYSCLS 309
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Length = 309 |
| >gnl|CDD|133421 cd01336, MDH_cytoplasmic_cytosolic, Cytoplasmic and cytosolic Malate dehydrogenases | Back alignment and domain information |
|---|
Score = 640 bits (1654), Expect = 0.0
Identities = 228/324 (70%), Positives = 267/324 (82%)
Query: 5 PLRVLVTGAAGQIGYALVPMIARGIMLGPDQPVILHMLDIEPAAEALNGVKMELIDAAFP 64
P+RVLVTGAAGQI Y+L+PMIA+G + GPDQPVILH+LDI PA +AL GV MEL D AFP
Sbjct: 2 PIRVLVTGAAGQIAYSLLPMIAKGDVFGPDQPVILHLLDIPPALKALEGVVMELQDCAFP 61
Query: 65 LLKGVVATTDVVEACKDVNIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEKHAAPN 124
LLK VVATTD EA KDV++A++VG PRKEGMERKD++ NV I+K Q AL+K+A N
Sbjct: 62 LLKSVVATTDPEEAFKDVDVAILVGAMPRKEGMERKDLLKANVKIFKEQGEALDKYAKKN 121
Query: 125 CKVLVVANPANTNALILKEFAPSIPAKNITCLTRLDHNRAMGQISERLKVHVSDVKNVII 184
KVLVV NPANTNALIL ++APSIP +N T LTRLDHNRA QI+ +L V VSDVKNVII
Sbjct: 122 VKVLVVGNPANTNALILLKYAPSIPKENFTALTRLDHNRAKSQIALKLGVPVSDVKNVII 181
Query: 185 WGNHSSTQYPDVNHATVTTSKGEKPVREAVADDNWLNTEFITTVQQRGAAIIKARKLSSA 244
WGNHSSTQYPDVNHATV + KP REAV DD WLN EFI+TVQ+RGAA+IKARKLSSA
Sbjct: 182 WGNHSSTQYPDVNHATVELNGKGKPAREAVKDDAWLNGEFISTVQKRGAAVIKARKLSSA 241
Query: 245 LSAASSACDHIRDWVLGTPKGTWVSMGVYSDGSYGIPEGLIYSFPVTCEKGEWSIVKGLK 304
+SAA + CDH+ DW GTP+G +VSMGVYSDGSYG+PEGLI+SFPVTC+ G+W IV+GL
Sbjct: 242 MSAAKAICDHVHDWWFGTPEGEFVSMGVYSDGSYGVPEGLIFSFPVTCKNGKWKIVQGLS 301
Query: 305 VDEFSRAKMDATAEELAEEKTLAY 328
+D+FSR K+DATA+EL EEK A
Sbjct: 302 IDDFSREKIDATAKELVEEKETAL 325
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MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subfamily are eukaryotic MDHs localized to the cytoplasm and cytosol. MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others. Length = 325 |
| >gnl|CDD|130819 TIGR01758, MDH_euk_cyt, malate dehydrogenase, NAD-dependent | Back alignment and domain information |
|---|
Score = 561 bits (1447), Expect = 0.0
Identities = 227/324 (70%), Positives = 267/324 (82%), Gaps = 1/324 (0%)
Query: 7 RVLVTGAAGQIGYALVPMIARGIMLGPDQPVILHMLDIEPAAEALNGVKMELIDAAFPLL 66
RV+VTGAAGQIGYAL+PMIARG MLG DQP+ILH+LDI PA + L GV MEL+D AFPLL
Sbjct: 1 RVVVTGAAGQIGYALLPMIARGRMLGKDQPIILHLLDIPPAMKVLEGVVMELMDCAFPLL 60
Query: 67 KGVVATTDVVEACKDVNIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEKHAAPNCK 126
GVV T D A DV++A++VG FPRKEGMER+D++SKNV I+K Q AL+K A +CK
Sbjct: 61 DGVVPTHDPAVAFTDVDVAILVGAFPRKEGMERRDLLSKNVKIFKEQGRALDKLAKKDCK 120
Query: 127 VLVVANPANTNALILKEFAPSIPAKNITCLTRLDHNRAMGQISERLKVHVSDVKNVIIWG 186
VLVV NPANTNAL+L +APSIP KN + LTRLDHNRA+ Q++ER V VSDVKNVIIWG
Sbjct: 121 VLVVGNPANTNALVLSNYAPSIPPKNFSALTRLDHNRALAQVAERAGVPVSDVKNVIIWG 180
Query: 187 NHSSTQYPDVNHATVTTSKGEKPVREAVADDNWLNTEFITTVQQRGAAIIKARKLSSALS 246
NHSSTQYPDVNHATVT +KPVREA+ DD +L+ EFITTVQQRGAAII+ARKLSSALS
Sbjct: 181 NHSSTQYPDVNHATVTKGGKQKPVREAIKDDAYLDGEFITTVQQRGAAIIRARKLSSALS 240
Query: 247 AASSACDHIRDWVLGTPKGTWVSMGVYSDGS-YGIPEGLIYSFPVTCEKGEWSIVKGLKV 305
AA +A D + DWVLGTP+GT+VSMGVYSDGS YG+P+GLI+SFPVTC+ GEW IV+GL V
Sbjct: 241 AAKAAVDQMHDWVLGTPEGTFVSMGVYSDGSPYGVPKGLIFSFPVTCKNGEWKIVEGLCV 300
Query: 306 DEFSRAKMDATAEELAEEKTLAYS 329
D+ SR K+ TA+EL EE+ A S
Sbjct: 301 DDSSRKKLALTAKELEEERDEALS 324
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This model represents the NAD-dependent cytosolic malate dehydrogenase from eukaryotes. The enzyme from pig has been studied by X-ray crystallography. Length = 324 |
| >gnl|CDD|130820 TIGR01759, MalateDH-SF1, malate dehydrogenase | Back alignment and domain information |
|---|
Score = 539 bits (1390), Expect = 0.0
Identities = 210/327 (64%), Positives = 248/327 (75%), Gaps = 6/327 (1%)
Query: 3 KNPLRVLVTGAAGQIGYALVPMIARGIMLGPDQPVILHMLDIEPAAEALNGVKMELIDAA 62
K P+RV VTGAAGQIGY+L+ IA G + G DQPV+LH+LDI PA +AL GV MEL D A
Sbjct: 1 KKPVRVAVTGAAGQIGYSLLFRIASGELFGKDQPVVLHLLDIPPAMKALEGVAMELEDCA 60
Query: 63 FPLLKGVVATTDVVEACKDVNIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEKHAA 122
FPLL GVVATTD EA KDV+ A++VG FPRK GMER D++SKN I+K Q AL K A
Sbjct: 61 FPLLAGVVATTDPEEAFKDVDAALLVGAFPRKPGMERADLLSKNGKIFKEQGKALNKVAK 120
Query: 123 PNCKVLVVANPANTNALILKEFAPSIPAKNITCLTRLDHNRAMGQISERLKVHVSDVKNV 182
+ KVLVV NPANTNALI + AP IP KN + +TRLDHNRA Q++ + V VSDVKNV
Sbjct: 121 KDVKVLVVGNPANTNALIASKNAPDIPPKNFSAMTRLDHNRAKYQLAAKAGVPVSDVKNV 180
Query: 183 IIWGNHSSTQYPDVNHATVTTSKGEKPVREAVADDNWLNTEFITTVQQRGAAIIKARKLS 242
IIWGNHS+TQ PD HATV +PV+E + DD WL EFI TVQQRGAA+I+AR S
Sbjct: 181 IIWGNHSNTQVPDFTHATVDG----RPVKEVIKDDKWLEGEFIPTVQQRGAAVIEARGAS 236
Query: 243 SALSAASSACDHIRDWVLGTPKGTWVSMGVYSDG-SYGIPEGLIYSFPVTCEK-GEWSIV 300
SA SAA++A DH+RDWV GTP+G WVSMGVYSDG YGIPEG+I+SFPVTC+ GEW IV
Sbjct: 237 SAASAANAAIDHVRDWVTGTPEGDWVSMGVYSDGNPYGIPEGIIFSFPVTCKGDGEWEIV 296
Query: 301 KGLKVDEFSRAKMDATAEELAEEKTLA 327
+GL +D+F R K+DAT +EL EEK A
Sbjct: 297 EGLPLDDFVRGKLDATEDELLEEKEEA 323
|
This model represents a family of malate dehydrogenases in bacteria and eukaryotes which utilize either NAD or NADP depending on the species and context. MDH interconverts malate and oxaloacetate and is a part of the citric acid cycle as well as the C4 cycle in certain photosynthetic organisms. Length = 323 |
| >gnl|CDD|235468 PRK05442, PRK05442, malate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Score = 523 bits (1351), Expect = 0.0
Identities = 196/323 (60%), Positives = 241/323 (74%), Gaps = 4/323 (1%)
Query: 2 AKNPLRVLVTGAAGQIGYALVPMIARGIMLGPDQPVILHMLDIEPAAEALNGVKMELIDA 61
K P+RV VTGAAGQIGY+L+ IA G MLG DQPVIL +L+I PA +AL GV MEL D
Sbjct: 1 MKAPVRVAVTGAAGQIGYSLLFRIASGDMLGKDQPVILQLLEIPPALKALEGVVMELDDC 60
Query: 62 AFPLLKGVVATTDVVEACKDVNIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEKHA 121
AFPLL GVV T D A KD ++A++VG PR GMERKD++ N +I+ AQ AL + A
Sbjct: 61 AFPLLAGVVITDDPNVAFKDADVALLVGARPRGPGMERKDLLEANGAIFTAQGKALNEVA 120
Query: 122 APNCKVLVVANPANTNALILKEFAPSIPAKNITCLTRLDHNRAMGQISERLKVHVSDVKN 181
A + KVLVV NPANTNALI + AP +PA+N T +TRLDHNRA+ Q++ + V V+D+K
Sbjct: 121 ARDVKVLVVGNPANTNALIAMKNAPDLPAENFTAMTRLDHNRALSQLAAKAGVPVADIKK 180
Query: 182 VIIWGNHSSTQYPDVNHATVTTSKGEKPVREAVADDNWLNTEFITTVQQRGAAIIKARKL 241
+ +WGNHS+TQYPD HAT+ KP E + D WL FI TVQ+RGAAII+AR
Sbjct: 181 MTVWGNHSATQYPDFRHATI----DGKPAAEVINDQAWLEDTFIPTVQKRGAAIIEARGA 236
Query: 242 SSALSAASSACDHIRDWVLGTPKGTWVSMGVYSDGSYGIPEGLIYSFPVTCEKGEWSIVK 301
SSA SAA++A DH+RDWVLGTP+G WVSMGV SDGSYGIPEGLI+ FPVTCE GE+ IV+
Sbjct: 237 SSAASAANAAIDHVRDWVLGTPEGDWVSMGVPSDGSYGIPEGLIFGFPVTCENGEYEIVQ 296
Query: 302 GLKVDEFSRAKMDATAEELAEEK 324
GL++D+FSR K+DAT EL EE+
Sbjct: 297 GLEIDDFSREKIDATLAELEEER 319
|
Length = 326 |
| >gnl|CDD|133420 cd00704, MDH, Malate dehydrogenase | Back alignment and domain information |
|---|
Score = 506 bits (1305), Expect = 0.0
Identities = 195/323 (60%), Positives = 239/323 (73%), Gaps = 2/323 (0%)
Query: 6 LRVLVTGAAGQIGYALVPMIARGIMLGPDQPVILHMLDIEPAAEALNGVKMELIDAAFPL 65
L VL+TGAAGQIGY L+ +IA G + G DQPVILH+LDI PA +AL GV MEL D AFPL
Sbjct: 1 LHVLITGAAGQIGYNLLFLIASGELFGDDQPVILHLLDIPPAMKALEGVVMELQDCAFPL 60
Query: 66 LKGVVATTDVVEACKDVNIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEKHAAPNC 125
LKGVV TTD EA KDV++A++VG FPRK GMER D++ KN I+K Q AL K A P
Sbjct: 61 LKGVVITTDPEEAFKDVDVAILVGAFPRKPGMERADLLRKNAKIFKEQGEALNKVAKPTV 120
Query: 126 KVLVVANPANTNALILKEFAPSIPAKNITCLTRLDHNRAMGQISERLKVHVSDVKNVIIW 185
KVLVV NPANTNALI + AP++P KN T LTRLDHNRA Q++ +L V VSDVKNVIIW
Sbjct: 121 KVLVVGNPANTNALIALKNAPNLPPKNFTALTRLDHNRAKAQVARKLGVRVSDVKNVIIW 180
Query: 186 GNHSSTQYPDVNHATVTTSKGEKPVREAVADDNWLNTEFITTVQQRGAAIIKARKLSSAL 245
GNHS+TQ PD+++A V G + V + D+ WLN EF+ TVQ+RGAAIIK R SSA
Sbjct: 181 GNHSNTQVPDLSNAVVYGPGGTEWV-LDLLDEEWLNDEFVKTVQKRGAAIIKKRGASSAA 239
Query: 246 SAASSACDHIRDWVLGTPKGTWVSMGVYSDG-SYGIPEGLIYSFPVTCEKGEWSIVKGLK 304
SAA + DH++DW+ GTP G VSMGVYS G YGIP G+++SFP TC+ G W +V+ LK
Sbjct: 240 SAAKAIADHVKDWLFGTPPGEIVSMGVYSPGNPYGIPPGIVFSFPCTCKGGGWHVVEDLK 299
Query: 305 VDEFSRAKMDATAEELAEEKTLA 327
++++ R K+ AT EEL EEK +A
Sbjct: 300 LNDWLREKLKATEEELIEEKEIA 322
|
Malate dehydrogenase (MDH) is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. MDHs belong to the NAD-dependent, lactate dehydrogenase (LDH)-like, 2-hydroxycarboxylate dehydrogenase family, which also includes the GH4 family of glycoside hydrolases. They are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others. Length = 323 |
| >gnl|CDD|133423 cd01338, MDH_choloroplast_like, Chloroplast-like malate dehydrogenases | Back alignment and domain information |
|---|
Score = 502 bits (1295), Expect = 0.0
Identities = 187/321 (58%), Positives = 230/321 (71%), Gaps = 4/321 (1%)
Query: 4 NPLRVLVTGAAGQIGYALVPMIARGIMLGPDQPVILHMLDIEPAAEALNGVKMELIDAAF 63
P+RV VTGAAGQIGY+L+ IA G M GPDQPVIL +L++ A +AL GV MEL D AF
Sbjct: 1 KPVRVAVTGAAGQIGYSLLFRIASGEMFGPDQPVILQLLELPQALKALEGVAMELEDCAF 60
Query: 64 PLLKGVVATTDVVEACKDVNIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEKHAAP 123
PLL +V T D A KD + A++VG PR GMER D++ N I+ AQ AL A+
Sbjct: 61 PLLAEIVITDDPNVAFKDADWALLVGAKPRGPGMERADLLKANGKIFTAQGKALNDVASR 120
Query: 124 NCKVLVVANPANTNALILKEFAPSIPAKNITCLTRLDHNRAMGQISERLKVHVSDVKNVI 183
+ KVLVV NP NTNALI + AP IP N T +TRLDHNRA Q++++ V V+DVKN++
Sbjct: 121 DVKVLVVGNPCNTNALIAMKNAPDIPPDNFTAMTRLDHNRAKSQLAKKAGVPVTDVKNMV 180
Query: 184 IWGNHSSTQYPDVNHATVTTSKGEKPVREAVADDNWLNTEFITTVQQRGAAIIKARKLSS 243
IWGNHS TQYPD +AT+ G KP E + D WL EFI TVQ+RGAAIIKAR SS
Sbjct: 181 IWGNHSPTQYPDFTNATI----GGKPAAEVINDRAWLEDEFIPTVQKRGAAIIKARGASS 236
Query: 244 ALSAASSACDHIRDWVLGTPKGTWVSMGVYSDGSYGIPEGLIYSFPVTCEKGEWSIVKGL 303
A SAA++A DH+RDWVLGTP+G W SM V SDGSYGIPEGLI+SFPV + G + IV+GL
Sbjct: 237 AASAANAAIDHMRDWVLGTPEGDWFSMAVPSDGSYGIPEGLIFSFPVRSKGGGYEIVEGL 296
Query: 304 KVDEFSRAKMDATAEELAEEK 324
++D+F+R K+DAT EL EE+
Sbjct: 297 EIDDFAREKIDATLAELLEER 317
|
MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subfamily are bacterial MDHs, and plant MDHs localized to the choloroplasts. MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others. Length = 322 |
| >gnl|CDD|215060 PLN00112, PLN00112, malate dehydrogenase (NADP); Provisional | Back alignment and domain information |
|---|
Score = 310 bits (797), Expect = e-103
Identities = 145/326 (44%), Positives = 195/326 (59%), Gaps = 10/326 (3%)
Query: 3 KNPLRVLVTGAAGQIGYALVPMIARGIMLGPDQPVILHMLDIEPAAEALNGVKMELIDAA 62
K + V V+GAAG I L+ +A G + GPDQP+ L +L E + +AL GV MEL D+
Sbjct: 98 KKLINVAVSGAAGMISNHLLFKLASGEVFGPDQPIALKLLGSERSKQALEGVAMELEDSL 157
Query: 63 FPLLKGVVATTDVVEACKDVNIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEKHAA 122
+PLL+ V D E +D A+++G PR GMER D++ N I+ Q AL + A+
Sbjct: 158 YPLLREVSIGIDPYEVFQDAEWALLIGAKPRGPGMERADLLDINGQIFAEQGKALNEVAS 217
Query: 123 PNCKVLVVANPANTNALILKEFAPSIPAKNITCLTRLDHNRAMGQISERLKVHVSDVKNV 182
N KV+VV NP NTNALI + AP+IPAKN LTRLD NRA Q++ + V V NV
Sbjct: 218 RNVKVIVVGNPCNTNALICLKNAPNIPAKNFHALTRLDENRAKCQLALKAGVFYDKVSNV 277
Query: 183 IIWGNHSSTQYPDVNHATVTTSKGEKPVREAVADDNWLNTEFITTVQQRGAAIIKARKLS 242
IWGNHS+TQ PD +A + PV+E + D WL EF VQ+RG +IK S
Sbjct: 278 TIWGNHSTTQVPDFLNAKI----NGLPVKEVITDHKWLEEEFTPKVQKRGGVLIKKWGRS 333
Query: 243 SALSAASSACDHIRDWVLGTPKGTWVSMGVYSDGS-YGIPEGLIYSFPVTCEK---GEWS 298
SA S A S D I+ V TP+G W S GVY+DG+ YGI EGL++S P C G++
Sbjct: 334 SAASTAVSIADAIKSLVTPTPEGDWFSTGVYTDGNPYGIAEGLVFSMP--CRSKGDGDYE 391
Query: 299 IVKGLKVDEFSRAKMDATAEELAEEK 324
IVK +++D++ R ++ + EL EK
Sbjct: 392 IVKDVEIDDYLRERIKKSEAELLAEK 417
|
Length = 444 |
| >gnl|CDD|130818 TIGR01757, Malate-DH_plant, malate dehydrogenase, NADP-dependent | Back alignment and domain information |
|---|
Score = 286 bits (732), Expect = 1e-94
Identities = 145/324 (44%), Positives = 198/324 (61%), Gaps = 6/324 (1%)
Query: 3 KNPLRVLVTGAAGQIGYALVPMIARGIMLGPDQPVILHMLDIEPAAEALNGVKMELIDAA 62
K + V V+GAAG I L+ M+A G + G DQP+ L +L E + EAL GV MEL D+
Sbjct: 42 KKTVNVAVSGAAGMISNHLLFMLASGEVFGQDQPIALKLLGSERSKEALEGVAMELEDSL 101
Query: 63 FPLLKGVVATTDVVEACKDVNIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEKHAA 122
+PLL+ V D E +D + A+++G PR GMER D++ N I+ Q AL A+
Sbjct: 102 YPLLREVSIGIDPYEVFEDADWALLIGAKPRGPGMERADLLDINGQIFADQGKALNAVAS 161
Query: 123 PNCKVLVVANPANTNALILKEFAPSIPAKNITCLTRLDHNRAMGQISERLKVHVSDVKNV 182
NCKVLVV NP NTNALI + AP+IP KN LTRLD NRA Q++ + + V NV
Sbjct: 162 KNCKVLVVGNPCNTNALIAMKNAPNIPRKNFHALTRLDENRAKCQLALKSGKFYTSVSNV 221
Query: 183 IIWGNHSSTQYPDVNHATVTTSKGEKPVREAVADDNWLNTEFITTVQQRGAAIIKARKLS 242
IWGNHS+TQ PD +A + G +P +E + D WL EF TVQ+RG A+IK S
Sbjct: 222 TIWGNHSTTQVPDFVNAKI----GGRPAKEVIKDTKWLEEEFTPTVQKRGGALIKKWGRS 277
Query: 243 SALSAASSACDHIRDWVLGTPKGTWVSMGVYSDGS-YGIPEGLIYSFPVTCE-KGEWSIV 300
SA S A S D I+ V+ TP+G W S GVY+DG+ YGI EGL++S P + G++ +
Sbjct: 278 SAASTAVSIADAIKSLVVPTPEGDWFSTGVYTDGNPYGIAEGLVFSMPCRSKGDGDYELA 337
Query: 301 KGLKVDEFSRAKMDATAEELAEEK 324
+ +D+F R ++ + +EL +EK
Sbjct: 338 TDVSMDDFLRERIRKSEDELLKEK 361
|
This model represents the NADP-dependent malate dehydrogenase found in plants, mosses and green algae and localized to the chloroplast. Malate dehydrogenase converts oxaloacetate into malate, a critical step in the C4 cycle which allows circumvention of the effects of photorespiration. Malate is subsequenctly transported from the chloroplast to the cytoplasm (and then to the bundle sheath cells in C4 plants). The plant and moss enzymes are light regulated via cysteine disulfide bonds. The enzyme from Sorghum has been crystallized. Length = 387 |
| >gnl|CDD|133431 cd05295, MDH_like, Malate dehydrogenase-like | Back alignment and domain information |
|---|
Score = 275 bits (705), Expect = 9e-90
Identities = 115/333 (34%), Positives = 183/333 (54%), Gaps = 13/333 (3%)
Query: 4 NPLRVLVTGAAGQIGYALVPMIARGIMLGPDQPVILHMLDIEPAAEALNGVKMELIDAAF 63
NPL+V +T A+ + Y L+P +A G + G ++ + +H+LD E L G+ ME+ D AF
Sbjct: 122 NPLQVCITNASAPLCYHLIPSLASGEVFGMEEEISIHLLDSPENLEKLKGLVMEVEDLAF 181
Query: 64 PLLKGVVATTDVVEACKDVNIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEKHAAP 123
PLL+G+ TTD+ A KD ++ V++ F KEG + + + V+I + +EK+A
Sbjct: 182 PLLRGISVTTDLDVAFKDAHVIVLLDDFLIKEGEDLEGCIRSRVAICQLYGPLIEKNAKE 241
Query: 124 NCKVLVVA-NPANTNALILKEFAPSIPAKNITCLTRLDHNRAMGQISERLKVHVSDVKNV 182
+ KV+V N IL ++APSIP KNI + RL NRA ++ +L V+ + +K+V
Sbjct: 242 DVKVIVAGRTFLNLKTSILIKYAPSIPRKNIIAVARLQENRAKALLARKLNVNSAGIKDV 301
Query: 183 IIWGNHSSTQYPDVNHATVTTSKG--------EKPVREAVADDNWLNTEFITTVQQRGAA 234
I+WGN Y D++ A V +PV E V D W+N EF+ T++ +
Sbjct: 302 IVWGNIGGNTYIDLSKARVYRYDSAIWGPPNYSRPVLELVHDSKWINGEFVATLKSLSS- 360
Query: 235 IIKARKLSSALSAASSACDHIRDWVLGTPKGTWVSMGVYSDGSYGIPEGLIYSFPVTCEK 294
+ +A+S A + + W G+P G S+GV S+G YGIPEG+++S PV +
Sbjct: 361 ---SLNHEAAISPAHAIATTLSYWYHGSPPGEIFSLGVISEGWYGIPEGIVFSMPVKFQN 417
Query: 295 GEWSIVKGLKVDEFSRAKMDATAEELAEEKTLA 327
G W +V L++ E R + +L +EK +A
Sbjct: 418 GSWEVVTDLELSEILREVLKRITSDLIQEKLVA 450
|
These MDH-like proteins are related to other groups in the MDH family but do not have conserved substrate and cofactor binding residues. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subgroup are uncharacterized MDH-like proteins from animals. They are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others. Length = 452 |
| >gnl|CDD|130817 TIGR01756, LDH_protist, lactate dehydrogenase | Back alignment and domain information |
|---|
Score = 269 bits (688), Expect = 5e-89
Identities = 117/310 (37%), Positives = 180/310 (58%), Gaps = 5/310 (1%)
Query: 25 IARGIMLGPDQPVILHMLDIEPAAEALNGVKMELIDAAFPLLKGVVATTDVVEACKDVNI 84
IA G + G ++PV LH+L+I PA L + MEL D AFP L G + TT + EA KD++
Sbjct: 5 IANGDLYG-NRPVCLHLLEIPPALNRLEALAMELEDCAFPNLAGTIVTTKLEEAFKDIDC 63
Query: 85 AVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEKHAAPNCKVLVVANPANTNALILKEF 144
A +V P K G R D+++KN I+KA AL ++A P KVLV+ NP NTN L+
Sbjct: 64 AFLVASVPLKPGEVRADLLTKNTPIFKATGEALSEYAKPTVKVLVIGNPVNTNCLVAMLH 123
Query: 145 APSIPAKNITCLTRLDHNRAMGQISERLKVHVSDVKNVIIWGNHSSTQYPDVNHATVTTS 204
AP + A+N + L LDHNRA+ +I+ +LKV V + +V++WGNH+ + D+ HA T +
Sbjct: 124 APKLSAENFSSLCMLDHNRAVSRIASKLKVPVDHIYHVVVWGNHAESMVADLTHAEFTKN 183
Query: 205 KGEKPVREAVADDNWLNTEFITTVQQRGAAIIKARKLSSALSAASSACDHIRDWVLGTPK 264
+ V + + D + +F + QR I++ R +SA S ++ H++ W+ GT
Sbjct: 184 GKHQKVFDELCRD-YPEPDFFEVIAQRAWKILEMRGFTSAASPVKASLQHMKAWLFGTRP 242
Query: 265 GTWVSMG--VYSDGSYGIPEGLIYSFPVTC-EKGEWSIVKGLKVDEFSRAKMDATAEELA 321
G +SMG V YGI G+I+SFP T E G+ +V+ +++ + + K+ T ++L
Sbjct: 243 GEVLSMGIPVPEGNPYGIKPGVIFSFPCTVDEDGKVHVVENFELNPWLKTKLAQTEKDLF 302
Query: 322 EEKTLAYSCL 331
EE+ A L
Sbjct: 303 EERETALKAL 312
|
This model represents a family of protist lactate dehydrogenases which have aparrently evolved from a recent protist malate dehydrogenase ancestor. Lactate dehydrogenase converts the hydroxyl at C-2 of lactate to a carbonyl in the product, pyruvate. The preference of this enzyme for NAD or NADP has not been determined. A critical residue in malate dehydrogenase, arginine-91 (T. vaginalis numbering) has been mutated to a leucine, eliminating the positive charge which complemeted the carboxylate in malate which is absent in lactate. Several other more subtle changes are proposed to make the active site smaller to accomadate the less bulky lactate molecule. Length = 313 |
| >gnl|CDD|223117 COG0039, Mdh, Malate/lactate dehydrogenases [Energy production and conversion] | Back alignment and domain information |
|---|
Score = 227 bits (581), Expect = 9e-73
Identities = 103/324 (31%), Positives = 153/324 (47%), Gaps = 21/324 (6%)
Query: 7 RVLVTGAAGQIGYALVPMIARGIMLGPDQPVILHMLDIEPAAEALNGVKMELIDAAFPLL 66
+V V GA G +G +L ++ LG + L ++DI E GV ++L AA PL
Sbjct: 2 KVAVIGA-GNVGSSLAFLLLLQ-GLGSE----LVLIDINE--EKAEGVALDLSHAAAPLG 53
Query: 67 KGVVATTDV-VEACKDVNIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEKHAAPNC 125
V T D E K +I V+ G PRK GM R D++ KN I K A A+ K+A P+
Sbjct: 54 SDVKITGDGDYEDLKGADIVVITAGVPRKPGMTRLDLLEKNAKIVKDIAKAIAKYA-PDA 112
Query: 126 KVLVVANPANTNALILKEFAPSIPAKNITCLTRLDHNRAMGQISERLKVHVSDVKNVIIW 185
VLVV NP + I +F+ + I T LD R ++E+L V DV +I
Sbjct: 113 IVLVVTNPVDILTYIAMKFSGFPKNRVIGSGTVLDSARFRTFLAEKLGVSPKDVHAYVI- 171
Query: 186 GNHSSTQYPDVNHATVTTSKGEKPVREAV-ADDNWLNTEFITTVQQRGAAIIKARKLSSA 244
G H T P + ATV G KP+ E + D E I V+ GA II+A+ +
Sbjct: 172 GEHGDTMVPLWSQATV----GGKPLEELLKEDTEEDLEELIERVRNAGAEIIEAKGAGTY 227
Query: 245 LSAASSACDHIRDWVLGTPKGTWVSMGVYSDGSYGIPEGLIYSFPVT-CEKGEWSIVKGL 303
A++ + + + + + VY DG YG+ E + + P + G I++ L
Sbjct: 228 YGPAAALARMVEAILRD--EKRVLPVSVYLDGEYGV-EDVYFGVPAVLGKNGVEEILELL 284
Query: 304 KVDEFSRAKMDATAEELAEEKTLA 327
D+ + K+D +AEEL + L
Sbjct: 285 LSDD-EQEKLDKSAEELKKNIELV 307
|
Length = 313 |
| >gnl|CDD|133419 cd00650, LDH_MDH_like, NAD-dependent, lactate dehydrogenase-like, 2-hydroxycarboxylate dehydrogenase family | Back alignment and domain information |
|---|
Score = 199 bits (508), Expect = 1e-62
Identities = 85/318 (26%), Positives = 136/318 (42%), Gaps = 57/318 (17%)
Query: 8 VLVTGAAGQIGYALVPMIARGIMLGPDQPVILHMLDIEPAAEALNGVKMELIDAAFPL-L 66
+ V GA G +G AL +A G + L + DI+ E L GV M+L DA PL
Sbjct: 1 IAVIGAGGNVGPALAFGLADG---SVLLAIELVLYDIDE--EKLKGVAMDLQDAVEPLAD 55
Query: 67 KGVVATTDVVEACKDVNIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEKHAAPNCK 126
V T D EA KD ++ ++ G RK GM R D++ +NV I K +EK+ +P+
Sbjct: 56 IKVSITDDPYEAFKDADVVIITAGVGRKPGMGRLDLLKRNVPIVKEIGDNIEKY-SPDAW 114
Query: 127 VLVVANPANTNALILKEFAPSIPAKNITCLTRLDHNRAMGQISERLKVHVSDVKNVIIWG 186
++VV+NP + ++ ++ +P + + L LD R ++E+L V DVK V I G
Sbjct: 115 IIVVSNPVDIITYLVWRYSG-LPKEKVIGLGTLDPIRFRRILAEKLGVDPDDVK-VYILG 172
Query: 187 NHSSTQYPDVNHATVTTSKGEKPVREAVADDNWLNTEFITTVQQRGAAIIKARKLSSALS 246
H +Q PD +
Sbjct: 173 EHGGSQVPDWSTVR---------------------------------------------- 186
Query: 247 AASSACDHIRDWVLGTPKGTWVSMGVYSDGSYGIPEGLIYSFPVTCEKGEWSIVKGLKVD 306
A+S D IR + +G + +GV ++G GIP+ ++ S P K + +
Sbjct: 187 IATSIADLIRSLL--NDEGEILPVGVRNNGQIGIPDDVVVSVPCIVGKNGVEEPIEVGLT 244
Query: 307 EFSRAKMDATAEELAEEK 324
+F K+ +A+ L +E
Sbjct: 245 DFELEKLQKSADTLKKEL 262
|
Members of this family include ubiquitous enzymes like L-lactate dehydrogenases (LDH), L-2-hydroxyisocaproate dehydrogenases, and some malate dehydrogenases (MDH). LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH/MDH-like proteins are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others. Length = 263 |
| >gnl|CDD|202437 pfam02866, Ldh_1_C, lactate/malate dehydrogenase, alpha/beta C-terminal domain | Back alignment and domain information |
|---|
Score = 162 bits (413), Expect = 2e-49
Identities = 61/172 (35%), Positives = 91/172 (52%), Gaps = 4/172 (2%)
Query: 157 TRLDHNRAMGQISERLKVHVSDVKNVIIWGNHSSTQYPDVNHATVTTSKGEKPVREAVAD 216
T LD RA ++E+ V NV + G HS TQ+PD +HA VT V+E + D
Sbjct: 1 TTLDTARARTFLAEKFGV-DPRSVNVYVIGEHSGTQFPDWSHAKVTIIPLISQVKENLKD 59
Query: 217 DNWLNTEFITTVQQRGAAIIKARKLSSALSAASSACDHIRDWVLGTPKGTWVSMGVYSDG 276
+W E I VQ G +I+A+ S+ S A +A + + GT G +S+GVY DG
Sbjct: 60 TDWELEELIERVQNAGYEVIEAKAGSTTYSMAYAAARIAKAILRGT--GGVLSVGVYLDG 117
Query: 277 SYGIPEGLIYSFPVTCEK-GEWSIVKGLKVDEFSRAKMDATAEELAEEKTLA 327
YG P+ + +S PV K G +V+ L +++F R K++ +A EL +E
Sbjct: 118 YYGSPDDIYFSVPVVLGKDGVEKVVEILPLNDFEREKLEKSAAELKKEIEKG 169
|
L-lactate dehydrogenases are metabolic enzymes which catalyze the conversion of L-lactate to pyruvate, the last step in anaerobic glycolysis. L-2-hydroxyisocaproate dehydrogenases are also members of the family. Malate dehydrogenases catalyze the interconversion of malate to oxaloacetate. The enzyme participates in the citric acid cycle. L-lactate dehydrogenase is also found as a lens crystallin in bird and crocodile eyes. Length = 173 |
| >gnl|CDD|200963 pfam00056, Ldh_1_N, lactate/malate dehydrogenase, NAD binding domain | Back alignment and domain information |
|---|
Score = 131 bits (332), Expect = 7e-38
Identities = 47/150 (31%), Positives = 74/150 (49%), Gaps = 8/150 (5%)
Query: 6 LRVLVTGAAGQIGYALVPMIARGIMLGPDQPVILHMLDIEPAAEALNGVKMELIDAAFPL 65
++V V GA G +G +L +A L + L ++DI + GV M+L + L
Sbjct: 1 VKVAVVGAGGGVGSSLAFALA-LQGLADE----LVLVDINK--DKAEGVAMDLSHGSTFL 53
Query: 66 LKGVVATTDVVEACKDVNIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEKHAAPNC 125
+ D EA KD ++ V+ G PRK GM R D++++N I+K A+ K AP+
Sbjct: 54 SVPGIVGGDDYEALKDADVVVITAGVPRKPGMTRLDLLNRNAGIFKDIVPAIAKS-APDA 112
Query: 126 KVLVVANPANTNALILKEFAPSIPAKNITC 155
VLVV+NP + I + + P + I
Sbjct: 113 IVLVVSNPVDILTYIAWKVSGLPPERVIGS 142
|
L-lactate dehydrogenases are metabolic enzymes which catalyze the conversion of L-lactate to pyruvate, the last step in anaerobic glycolysis. L-2-hydroxyisocaproate dehydrogenases are also members of the family. Malate dehydrogenases catalyze the interconversion of malate to oxaloacetate. The enzyme participates in the citric acid cycle. L-lactate dehydrogenase is also found as a lens crystallin in bird and crocodile eyes. N-terminus (this family) is a Rossmann NAD-binding fold. C-terminus is an unusual alpha+beta fold. Length = 142 |
| >gnl|CDD|133418 cd00300, LDH_like, L-lactate dehydrogenase-like enzymes | Back alignment and domain information |
|---|
Score = 82.7 bits (205), Expect = 4e-18
Identities = 77/311 (24%), Positives = 137/311 (44%), Gaps = 21/311 (6%)
Query: 14 AGQIGYALVPMIARGIMLGPDQPVILHMLDIEPAAEALNGVKMELIDAAFPLLKGVVATT 73
AG +G A +A ++ ++ ++D+ E G ++L A+ L G +
Sbjct: 6 AGNVGAA----VAFALIAKGLASELV-LVDVNE--EKAKGDALDLSHASAFLATGTIVRG 58
Query: 74 DVVEACKDVNIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEKHAAPNCKVLVVANP 133
D +I V+ G PRK G R D++++N I ++ + L+K+ P+ +LVV+NP
Sbjct: 59 GDYADAADADIVVITAGAPRKPGETRLDLINRNAPILRSVITNLKKY-GPDAIILVVSNP 117
Query: 134 ANTNALILKEFAPSIPAKNITCLTRLDHNRAMGQISERLKVHVSDVKNVIIWGNHSSTQY 193
+ + ++ + + I T LD R ++E+L V V ++ G H +Q
Sbjct: 118 VDILTYVAQKLSGLPKNRVIGSGTLLDSARFRSLLAEKLDVDPQSVHAYVL-GEHGDSQV 176
Query: 194 PDVNHATVTTSKGEKPVREAVADDNWLNTEFITTVQQRGAAIIKARKLSSALSAASSACD 253
+ ATV G P+ E V+ G II+ K ++ A++ D
Sbjct: 177 VAWSTATV----GGLPLEELAPFTKLDLEAIEEEVRTSGYEIIR-LKGATNYGIATAIAD 231
Query: 254 HIRDWVLGTPKGTWVSMGVYSDGSYGIPEGLIYSFP-VTCEKGEWSIVKG-LKVDEFSRA 311
++ +L + + + +G YGI E + S P V +G I++ L DE A
Sbjct: 232 IVKS-ILLDERRV-LPVSAVQEGQYGI-EDVALSVPAVVGREGVVRILEIPLTEDE--EA 286
Query: 312 KMDATAEELAE 322
K+ +AE L E
Sbjct: 287 KLQKSAEALKE 297
|
Members of this subfamily are tetrameric NAD-dependent 2-hydroxycarboxylate dehydrogenases including LDHs, L-2-hydroxyisocaproate dehydrogenases (L-HicDH), and LDH-like malate dehydrogenases (MDH). Dehydrogenases catalyze the conversion of carbonyl compounds to alcohols or amino acids. LDHs catalyze the last step of glycolysis in which pyruvate is converted to L-lactate. Vertebrate LDHs are non-allosteric, but some bacterial LDHs are activated by an allosteric effector such as fructose-1,6-bisphosphate. L-HicDH catalyzes the conversion of a variety of 2-oxo carboxylic acids with medium-sized aliphatic or aromatic side chains. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH-like subfamily is part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others. Length = 300 |
| >gnl|CDD|133424 cd01339, LDH-like_MDH, L-lactate dehydrogenase-like malate dehydrogenase proteins | Back alignment and domain information |
|---|
Score = 78.7 bits (195), Expect = 1e-16
Identities = 68/266 (25%), Positives = 109/266 (40%), Gaps = 35/266 (13%)
Query: 69 VVATTDVVEACKDVNIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEKHAAPNCKVL 128
V T D E ++ V+ G PRK GM R D++ N I K A ++K+ APN V+
Sbjct: 55 VTGTNDY-EDIAGSDVVVITAGIPRKPGMSRDDLLGTNAKIVKEVAENIKKY-APNAIVI 112
Query: 129 VVANPANTNALILKEFAPSIPAKNITCLTRLDHNRAMGQ------------ISERLKVHV 176
VV NP + + + + NR +G I+E L V V
Sbjct: 113 VVTNPLDVMTYVAYKA------------SGFPRNRVIGMAGVLDSARFRYFIAEELGVSV 160
Query: 177 SDVKNVIIWGNHSSTQYPDVNHATVTTSKGEKPVREAVADDNWLNTEFITTVQQRGAAII 236
DV+ +++ G H T P ++TV G P+ E + + E + + GA I+
Sbjct: 161 KDVQAMVL-GGHGDTMVPLPRYSTV----GGIPLTELITKEEI--DEIVERTRNGGAEIV 213
Query: 237 KARKLSSALSAASSACDHIRDWVLGTPKGTWVSMGVYSDGSYGIPEGLIYSFPVTCEKGE 296
K SA A ++A + + +L K Y +G YGI + + PV K
Sbjct: 214 NLLKTGSAYYAPAAAIAEMVEAILKDKKRVLPC-SAYLEGEYGI-KDIFVGVPVVLGKNG 271
Query: 297 WSIVKGLKVDEFSRAKMDATAEELAE 322
+ L + + + D + E + E
Sbjct: 272 VEKIIELDLTDEEKEAFDKSVESVKE 297
|
Members of this subfamily have an LDH-like structure and an MDH enzymatic activity. Some members, like MJ0490 from Methanococcus jannaschii, exhibit both MDH and LDH activities. Tetrameric MDHs, including those from phototrophic bacteria, are more similar to LDHs than to other MDHs. LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH-like MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others. Length = 300 |
| >gnl|CDD|180477 PRK06223, PRK06223, malate dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Score = 77.1 bits (191), Expect = 4e-16
Identities = 78/329 (23%), Positives = 137/329 (41%), Gaps = 57/329 (17%)
Query: 14 AGQIGYALVPMIARGIMLGPDQPVILHMLDIEPAAEALNGVKMELIDAAFPLLKGVVATT 73
AG +G L ++A + + + DI G +++ +AA V
Sbjct: 10 AGNVGATLAHLLAL------KELGDVVLFDI--VEGVPQGKALDIAEAA------PVEGF 55
Query: 74 DVV-------EACKDVNIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEKHAAPNCK 126
D E ++ V+ G PRK GM R D++ N I K A ++K+ AP+
Sbjct: 56 DTKITGTNDYEDIAGSDVVVITAGVPRKPGMSRDDLLGINAKIMKDVAEGIKKY-APDAI 114
Query: 127 VLVVANPANT-NALILKEFAPSIPAKNITCLTRLDHNRAMGQ------------ISERLK 173
V+VV NP + + LKE + NR +G I+E L
Sbjct: 115 VIVVTNPVDAMTYVALKE-------------SGFPKNRVIGMAGVLDSARFRTFIAEELN 161
Query: 174 VHVSDVKNVIIWGNHSSTQYPDVNHATVTTSKGEKPVREAVADDNWLNTEFITTVQQRGA 233
V V DV ++ G H + P V ++TV G P+ + ++ + L+ E + ++ GA
Sbjct: 162 VSVKDVTAFVL-GGHGDSMVPLVRYSTV----GGIPLEDLLSKEK-LD-EIVERTRKGGA 214
Query: 234 AIIKARKLSSALSAASSACDHIRDWVLGTPKGTWVSMGVYSDGSYGIPEGLIYSFPVTCE 293
I+ K SA A +++ + + +L K + Y +G YG+ + + PV
Sbjct: 215 EIVGLLKTGSAYYAPAASIAEMVEAILKD-KKRVLPCSAYLEGEYGV-KDVYVGVPVKLG 272
Query: 294 KGEWSIVKGLKVDEFSRAKMDATAEELAE 322
K + L++D+ +A D + E + +
Sbjct: 273 KNGVEKIIELELDDEEKAAFDKSVEAVKK 301
|
Length = 307 |
| >gnl|CDD|173409 PTZ00117, PTZ00117, malate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Score = 73.2 bits (180), Expect = 1e-14
Identities = 61/208 (29%), Positives = 98/208 (47%), Gaps = 6/208 (2%)
Query: 73 TDVVEACKDVNIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEKHAAPNCKVLVVAN 132
T+ E KD ++ V+ G RKE M R+D+++ N I K+ A +++K+ PN V+ V N
Sbjct: 65 TNNYEDIKDSDVVVITAGVQRKEEMTREDLLTINGKIMKSVAESVKKY-CPNAFVICVTN 123
Query: 133 PANTNALILKEFAPSIPAKNITCLT-RLDHNRAMGQISERLKVHVSDVKNVIIWGNHSST 191
P + + +E + IP+ I + LD +R ++E+L V DV V+I G H
Sbjct: 124 PLDCMVKVFQEKS-GIPSNKICGMAGVLDSSRFRCNLAEKLGVSPGDVSAVVI-GGHGDL 181
Query: 192 QYPDVNHATVTTSKGEKPVREAVADDNWLNTEFITTVQQRGAAIIKARKLSSALSAASSA 251
P + TV V++ + +N E I + G I+K K SA A ++A
Sbjct: 182 MVPLPRYCTVNGIPLSDFVKKGAITEKEIN-EIIKKTRNMGGEIVKLLKKGSAFFAPAAA 240
Query: 252 CDHIRDWVLGTPKGTWVSMGVYSDGSYG 279
+ + L K V VY +G Y
Sbjct: 241 IVAMIEAYLKDEKRVLVC-SVYLNGQYN 267
|
Length = 319 |
| >gnl|CDD|133430 cd05294, LDH-like_MDH_nadp, A lactate dehydrogenases-like structure with malate dehydrogenase enzymatic activity | Back alignment and domain information |
|---|
Score = 70.1 bits (172), Expect = 1e-13
Identities = 64/245 (26%), Positives = 116/245 (47%), Gaps = 38/245 (15%)
Query: 6 LRVLVTGAAGQIGYALVPMIARGIMLGPDQPVI--LHMLDIEPAAEALNGVKMELIDAAF 63
++V + GA+G++G A ++A+ + V+ ++++ + E L G+++++ DA
Sbjct: 1 MKVSIIGASGRVGSATALLLAK-------EDVVKEINLISRPKSLEKLKGLRLDIYDA-- 51
Query: 64 PLLKGVVATTDV---VEACKDV------NIAVMVGGFPRKEGMERKDVMSKNVSIYKAQA 114
+A + ++ D+ +I ++ G PRKEGM R D+ KN I K A
Sbjct: 52 ------LAAAGIDAEIKISSDLSDVAGSDIVIITAGVPRKEGMSRLDLAKKNAKIVKKYA 105
Query: 115 SALEKHAAPNCKVLVVANPANT---NALILKEFAPSIPAKNITCLTRLDHNRAMGQISER 171
+ + AP+ K+LVV NP + AL F + + T LD R I++
Sbjct: 106 KQIAEF-APDTKILVVTNPVDVMTYKALKESGFDKN---RVFGLGTHLDSLRFKVAIAKH 161
Query: 172 LKVHVSDVKNVIIWGNHSSTQYPDVNHATVTTSKGEKPVREAVADDNWLNTEFITTVQQR 231
VH+S+V II G H + P ++ +TS G P++ ++ + + TV+
Sbjct: 162 FNVHISEVHTRII-GEHGDSMVPLIS----STSIGGIPIKRFPEYKDFDVEKIVETVKNA 216
Query: 232 GAAII 236
G II
Sbjct: 217 GQNII 221
|
The LDH-like MDH proteins have a lactate dehyhydrogenase-like (LDH-like) structure and malate dehydrogenase (MDH) enzymatic activity. This subgroup is composed of some archaeal LDH-like MDHs that prefer NADP(H) rather than NAD(H) as a cofactor. One member, MJ0490 from Methanococcus jannaschii, has been observed to form dimers and tetramers during crystalization, although it is believed to exist primarilly as a tetramer in solution. In addition to its MDH activity, MJ0490 also possesses fructose-1,6-bisphosphate-activated LDH activity. Members of this subgroup have a higher sequence similarity to LDHs than to other MDHs. LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH-like MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)- binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenase, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others. Length = 309 |
| >gnl|CDD|133429 cd05293, LDH_1, A subgroup of L-lactate dehydrogenases | Back alignment and domain information |
|---|
Score = 69.2 bits (170), Expect = 3e-13
Identities = 89/330 (26%), Positives = 136/330 (41%), Gaps = 40/330 (12%)
Query: 7 RVLVTGAAGQIGYALVPMI-ARGIMLGPDQPVILHMLDIEPAAEALNGVKMEL-IDAAFP 64
+V V G GQ+G A I A+G+ D+ L ++D+ + L G M+L +AF
Sbjct: 5 KVTVVGV-GQVGMACAISILAKGLA---DE---LVLVDVVE--DKLKGEAMDLQHGSAFL 55
Query: 65 LLKGVVATTDVVEACKDVNIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEKHAAPN 124
+ A D + + ++ G + EG R D++ +NV I+K L K++ PN
Sbjct: 56 KNPKIEADKDY-SVTANSKVVIVTAGARQNEGESRLDLVQRNVDIFKGIIPKLVKYS-PN 113
Query: 125 CKVLVVANPANTNALILKEFAPSI----PAKNITCLTRLDHNRAMGQISERLKVHVSDVK 180
+LVV+NP + I+ A + + I LD R I+ERL V S V
Sbjct: 114 AILLVVSNPVD----IMTYVAWKLSGLPKHRVIGSGCNLDSARFRYLIAERLGVAPSSVH 169
Query: 181 NVIIWGNHSSTQYP---DVNHATVTTSKGEKPVREAVADDNWLNTEFITTVQQRGAAIIK 237
II G H + P VN A V + + W E V +IK
Sbjct: 170 GWII-GEHGDSSVPVWSGVNVAGVRLQDLNPDIGTDKDPEKW--KEVHKQVVDSAYEVIK 226
Query: 238 ARKLSS---ALSAASSACDHIRDWVLGTPKGTWVSMGVYSDGSYGIPEGLIYSFPVTCEK 294
+ +S LS A + D +L G S+ G +GI + + S P C
Sbjct: 227 LKGYTSWAIGLSVAD-----LVDAIL-RNTGRVHSVSTLVKGLHGIEDEVFLSLP--CIL 278
Query: 295 GEWSIVKGLKV--DEFSRAKMDATAEELAE 322
GE I +K E + K+ +A+ L E
Sbjct: 279 GENGITHVIKQPLTEEEQEKLQKSADTLWE 308
|
L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed of eukaryotic LDHs. Vertebrate LDHs are non-allosteric. This is in contrast to some bacterial LDHs that are activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others. Length = 312 |
| >gnl|CDD|233562 TIGR01763, MalateDH_bact, malate dehydrogenase, NAD-dependent | Back alignment and domain information |
|---|
Score = 68.0 bits (166), Expect = 7e-13
Identities = 63/240 (26%), Positives = 110/240 (45%), Gaps = 10/240 (4%)
Query: 83 NIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEKHAAPNCKVLVVANPANTNALILK 142
+I V+ G PRK GM R+D++S N I + + +H +PN ++VV+NP + +
Sbjct: 71 DIVVITAGLPRKPGMSREDLLSMNAGIVREVTGRIMEH-SPNPIIVVVSNPLDAMTYVAW 129
Query: 143 EFAPSIPAKNITCLTRLDHNRAMGQISERLKVHVSDVKNVIIWGNHSSTQYPDVNHATVT 202
+ + + I LD R I+ L V V DV ++ G H P V ++TV
Sbjct: 130 QKSGFPKERVIGQAGVLDSARFRTFIAMELGVSVQDVTACVL-GGHGDAMVPLVRYSTV- 187
Query: 203 TSKGEKPVREAVADDNWLNTEFITTVQQRGAAIIKARKLSSALSAASSACDHIRDWVLGT 262
PV + ++ + E + ++ G I+ K SA A +++ + + +L
Sbjct: 188 ---AGIPVADLISAERI--AEIVERTRKGGGEIVNLLKQGSAYYAPAASVVEMVEAILKD 242
Query: 263 PKGTWVSMGVYSDGSYGIPEGLIYSFPVTCEKGEWSIVKGLKVDEFSRAKMDATAEELAE 322
K + Y DG YGI +G+ PV K + LK+D+ A ++ +A+ + E
Sbjct: 243 RKRV-LPCAAYLDGQYGI-DGIYVGVPVILGKNGVEHIYELKLDQSELALLNKSAKIVDE 300
|
This enzyme converts malate into oxaloacetate in the citric acid cycle. The critical residues which discriminate malate dehydrogenase from lactate dehydrogenase have been characterized , and have been used to set the cutoffs for this model. Sequences showing [aflimv][ap]R[rk]pgM[st] and [ltv][ilm]gGhgd were kept above trusted, while those in which the capitalized residues in the patterns were found to be Q, E and E were kept below the noise cutoff. Some sequences in the grey zone have been annotated as malate dehydrogenases, but none have been characterized. Phylogenetically, a clade of sequences from eukaryotes such as Toxoplasma and Plasmodium which include a characterized lactate dehydrogenase and show abiguous critical residue patterns appears to be more closely related to these bacterial sequences than other eukaryotic sequences. These are relatively long branch and have been excluded from the model. All other sequences falling below trusted appear to be phylogenetically outside of the clade including the trusted hits. The annotation of Botryococcus braunii as lactate dehydrogenase appears top be in error. This was initially annotated as MDH by Swiss-Prot and then changed. The rationale for either of these annotations is not traceable [Energy metabolism, TCA cycle]. Length = 305 |
| >gnl|CDD|130833 TIGR01772, MDH_euk_gproteo, malate dehydrogenase, NAD-dependent | Back alignment and domain information |
|---|
Score = 67.0 bits (164), Expect = 1e-12
Identities = 72/255 (28%), Positives = 106/255 (41%), Gaps = 35/255 (13%)
Query: 7 RVLVTGAAGQIGYALVPMIARGIMLGPDQPVI--LHMLDIEPAAEALNGVKMEL--IDAA 62
+V V GAAG IG L ++ QP + L + DI AA GV +L I A
Sbjct: 1 KVAVLGAAGGIGQPLSLLLKL-------QPYVSELSLYDIAGAA----GVAADLSHIPTA 49
Query: 63 FPLLKGVVATTDVVEACKDVNIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEKHAA 122
+KG + A K ++ V+ G PRK GM R D+ + N I K +A+ +
Sbjct: 50 -ASVKGFSGEEGLENALKGADVVVIPAGVPRKPGMTRDDLFNVNAGIVKDLVAAVAES-C 107
Query: 123 PNCKVLVVANPANTN----ALILKEFAPSIPAKNITCLTRLDHNRAMGQISERLKVHVSD 178
P +LV+ NP N+ A +LK+ P + +T LD RA ++E LK
Sbjct: 108 PKAMILVITNPVNSTVPIAAEVLKKKGVYDP-NKLFGVTTLDIVRANTFVAE-LKGKDPM 165
Query: 179 VKNVIIWGNHSSTQYPDVNHATVTTSKGEKPVREAVADDNWLNTEFITTVQQRGAAIIKA 238
NV + G HS + + EA I +Q G ++KA
Sbjct: 166 EVNVPVIGGHSGETIIPLISQCPGKVLFTEDQLEA----------LIHRIQNAGTEVVKA 215
Query: 239 R--KLSSALSAASSA 251
+ S+ LS A +
Sbjct: 216 KAGAGSATLSMAFAG 230
|
This model represents the NAD-dependent malate dehydrogenase found in eukaryotes and certain gamma proteobacteria. The enzyme is involved in the citric acid cycle as well as the glyoxalate cycle. Several isoforms exidt in eukaryotes. In S. cereviseae, for example, there are cytoplasmic, mitochondrial and peroxisomal forms. Although malate dehydrogenases have in some cases been mistaken for lactate dehydrogenases due to the similarity of these two substrates and the apparent ease with which evolution can toggle these activities, critical residues have been identified which can discriminate between the two activities. At the time of the creation of this model no hits above the trusted cutoff contained critical residues typical of lactate dehydrogenases [Energy metabolism, TCA cycle]. Length = 312 |
| >gnl|CDD|133422 cd01337, MDH_glyoxysomal_mitochondrial, Glyoxysomal and mitochondrial malate dehydrogenases | Back alignment and domain information |
|---|
Score = 63.3 bits (155), Expect = 2e-11
Identities = 58/193 (30%), Positives = 92/193 (47%), Gaps = 25/193 (12%)
Query: 6 LRVLVTGAAGQIGYALVPMIARGIMLGPDQPVI--LHMLDIEPAAEALNGVKMEL--IDA 61
++V V GAAG IG L +L P++ L + DI GV +L I+
Sbjct: 1 VKVAVLGAAGGIGQPLS-------LLLKLNPLVSELALYDIV----NTPGVAADLSHINT 49
Query: 62 AFPLLKGVVATTDVVEACKDVNIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEKHA 121
+ G + ++ +A K ++ V+ G PRK GM R D+ + N I + A+A+ K
Sbjct: 50 P-AKVTGYLGPEELKKALKGADVVVIPAGVPRKPGMTRDDLFNINAGIVRDLATAVAKA- 107
Query: 122 APNCKVLVVANPANTN----ALILKEFAPSIPAKNITCLTRLDHNRAMGQISERLKVHVS 177
P +L+++NP N+ A +LK+ P K + +T LD RA ++E L + +
Sbjct: 108 CPKALILIISNPVNSTVPIAAEVLKKAGVYDP-KRLFGVTTLDVVRANTFVAELLGLDPA 166
Query: 178 DVK-NVIIWGNHS 189
V VI G HS
Sbjct: 167 KVNVPVI--GGHS 177
|
MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subfamily are localized to the glycosome and mitochondria. MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others. Length = 310 |
| >gnl|CDD|233566 TIGR01771, L-LDH-NAD, L-lactate dehydrogenase | Back alignment and domain information |
|---|
Score = 55.3 bits (134), Expect = 1e-08
Identities = 68/302 (22%), Positives = 113/302 (37%), Gaps = 52/302 (17%)
Query: 41 MLDIEPAAEALNGVKMELIDAAFPLLKGVVATTDVVEACKDVNIAVMVGGFPRKEGMERK 100
++DI + G M+L AA L + CKD ++ V+ G P+K G R
Sbjct: 26 LIDINK--DKAEGEAMDLQHAASFLPTPKKIRSGDYSDCKDADLVVITAGAPQKPGETRL 83
Query: 101 DVMSKNVSIYKAQASALEKHAAPNCKVLVVANPANTNALILKEFAPSIPAKNITCLTRLD 160
+++ +NV I K+ + K + LV NP + IL A L+
Sbjct: 84 ELVGRNVRIMKSIVPEVVKS-GFDGIFLVATNPVD----ILTYVAWK--------LSGFP 130
Query: 161 HNRAMGQ------------ISERLKVHVSDVKNVIIWGNHSSTQYPDVNHATVTTSKGEK 208
NR +G ++E+L V V II G H ++ P + AT+ G
Sbjct: 131 KNRVIGSGTVLDTARLRYLLAEKLGVDPQSVHAYII-GEHGDSEVPVWSSATI----GGV 185
Query: 209 PVREAVADDNWLNTEFITT--------VQQRGAA--IIKARKLSSALSAASSACDHIRDW 258
P+ + +L + T + R AA II RK ++ + +
Sbjct: 186 PLLD------YLKAKGTETDLDLEEIEKEVRDAAYEIIN-RKGATYYGIGMAVARIVEAI 238
Query: 259 VLGTPKGTWVSMGVYSDGSYGIPEGLIYSFPVTCEKGEWSIVKGLKVDEFSRAKMDATAE 318
+ + VS Y DG YGI + + P + + L + + + +AE
Sbjct: 239 LHDENRVLPVS--AYLDGEYGI-KDVYIGVPAVLGRNGVEEIIELPLSDEEKEAFQKSAE 295
Query: 319 EL 320
L
Sbjct: 296 TL 297
|
This model represents the NAD-dependent L-lactate dehydrogenases from bacteria and eukaryotes. This enzyme function as as the final step in anaerobic glycolysis. Although lactate dehydrogenases have in some cases been mistaken for malate dehydrogenases due to the similarity of these two substrates and the apparent ease with which evolution can toggle these activities, critical residues have been identified which can discriminate between the two activities. At the time of the creation of this model no hits above the trusted cutoff contained critical residues typical of malate dehydrogenases [Energy metabolism, Anaerobic, Energy metabolism, Glycolysis/gluconeogenesis]. Length = 299 |
| >gnl|CDD|215058 PLN00106, PLN00106, malate dehydrogenase | Back alignment and domain information |
|---|
Score = 54.6 bits (132), Expect = 2e-08
Identities = 57/190 (30%), Positives = 92/190 (48%), Gaps = 23/190 (12%)
Query: 7 RVLVTGAAGQIGYALVPMIARGIMLGPDQPVI--LHMLDIEPAAEALNGVKMEL--IDAA 62
+V V GAAG IG L +L P++ LH+ DI GV ++ I+
Sbjct: 20 KVAVLGAAGGIGQPLS-------LLMKMNPLVSELHLYDIANTP----GVAADVSHINTP 68
Query: 63 FPLLKGVVATTDVVEACKDVNIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEKHAA 122
++G + + +A K ++ ++ G PRK GM R D+ + N I K A+ KH
Sbjct: 69 -AQVRGFLGDDQLGDALKGADLVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEAVAKH-C 126
Query: 123 PNCKVLVVANPANTN----ALILKEFAPSIPAKNITCLTRLDHNRAMGQISERLKVHVSD 178
PN V +++NP N+ A +LK+ A K + +T LD RA ++E+ + +D
Sbjct: 127 PNALVNIISNPVNSTVPIAAEVLKK-AGVYDPKKLFGVTTLDVVRANTFVAEKKGLDPAD 185
Query: 179 VKNVIIWGNH 188
V +V + G H
Sbjct: 186 V-DVPVVGGH 194
|
Length = 323 |
| >gnl|CDD|178836 PRK00066, ldh, L-lactate dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Score = 53.0 bits (128), Expect = 7e-08
Identities = 66/255 (25%), Positives = 111/255 (43%), Gaps = 24/255 (9%)
Query: 77 EACKDVNIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEKHAAPNCKVLVVANPANT 136
CKD ++ V+ G P+K G R D++ KN+ I+K+ + + LV +NP +
Sbjct: 69 SDCKDADLVVITAGAPQKPGETRLDLVEKNLKIFKSIVGEVMAS-GFDGIFLVASNPVDI 127
Query: 137 NALILKEFAPSIPAKNITCLTRLDHNRAMGQISERLKVHVSDVKNVIIWGNHSSTQYPDV 196
+ + + I T LD R +SE+L V V II G H T++P
Sbjct: 128 LTYATWKLSGFPKERVIGSGTSLDSARFRYMLSEKLDVDPRSVHAYII-GEHGDTEFPVW 186
Query: 197 NHATVTTSKGEKPVREAVADDNWLNTEFITTVQQ--RGAA--IIKARKLSS-----ALSA 247
+HA V P+ E + ++ + E + + + R AA II+ + + AL+
Sbjct: 187 SHANV----AGVPLEEYLEENEQYDEEDLDEIFENVRDAAYEIIEKKGATYYGIAMALAR 242
Query: 248 ASSACDHIRDWVLGTPKGTWVSMGVYSDGSYGIPEGLIYSFPVTCEKGEWSIVKGLKVDE 307
+ A + + VL VS Y +G YG + I V G IV+ L +++
Sbjct: 243 ITKAILNNENAVLP------VS--AYLEGQYGEEDVYIGVPAVVNRNGIREIVE-LPLND 293
Query: 308 FSRAKMDATAEELAE 322
+ K +A+ L E
Sbjct: 294 DEKQKFAHSADVLKE 308
|
Length = 315 |
| >gnl|CDD|235340 PRK05086, PRK05086, malate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Score = 51.9 bits (125), Expect = 1e-07
Identities = 56/194 (28%), Positives = 87/194 (44%), Gaps = 22/194 (11%)
Query: 6 LRVLVTGAAGQIGYALVPMIARGIMLGPDQPVILHMLDIEPAAEALNGVKMEL--IDAAF 63
++V V GAAG IG AL ++ + G + L + DI P GV ++L I A
Sbjct: 1 MKVAVLGAAGGIGQALALLLKTQLPAGSE----LSLYDIAPVTP---GVAVDLSHIPTAV 53
Query: 64 PLLKGVVATTDVVEACKDVNIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEKHAA- 122
+ KG + D A + ++ ++ G RK GM+R D+ + N I K + +EK A
Sbjct: 54 KI-KGF-SGEDPTPALEGADVVLISAGVARKPGMDRSDLFNVNAGIVK---NLVEKVAKT 108
Query: 123 -PNCKVLVVANPANTNALILKEF---APSIPAKNITCLTRLDHNRAMGQISERLKVHVSD 178
P + ++ NP NT I E A + +T LD R+ ++E +
Sbjct: 109 CPKACIGIITNPVNTTVAIAAEVLKKAGVYDKNKLFGVTTLDVIRSETFVAELKGKQPGE 168
Query: 179 VK-NVIIWGNHSST 191
V+ VI G HS
Sbjct: 169 VEVPVI--GGHSGV 180
|
Length = 312 |
| >gnl|CDD|173376 PTZ00082, PTZ00082, L-lactate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Score = 51.2 bits (123), Expect = 2e-07
Identities = 32/127 (25%), Positives = 55/127 (43%), Gaps = 7/127 (5%)
Query: 80 KDVNIAVMVGGFPRKEGME-----RKDVMSKNVSIYKAQASALEKHAAPNCKVLVVANPA 134
++ ++ G ++ G R D++ N I A ++K+ PN V+V+ NP
Sbjct: 73 AGSDVVIVTAGLTKRPGKSDKEWNRDDLLPLNAKIMDEVAEGIKKYC-PNAFVIVITNPL 131
Query: 135 NTNALILKEFAPSIPAKNITCLTRLDHNRAMGQISERLKVHVSDVKNVIIWGNHSSTQYP 194
+ +L+E + K LD +R I+E+L V+ DV +I G H P
Sbjct: 132 DVMVKLLQEHSGLPKNKVCGMAGVLDSSRLRTYIAEKLGVNPRDVHASVI-GAHGDKMVP 190
Query: 195 DVNHATV 201
+ TV
Sbjct: 191 LPRYVTV 197
|
Length = 321 |
| >gnl|CDD|240360 PTZ00325, PTZ00325, malate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Score = 50.8 bits (122), Expect = 4e-07
Identities = 56/189 (29%), Positives = 85/189 (44%), Gaps = 19/189 (10%)
Query: 7 RVLVTGAAGQIGYALVPMIARGIMLGPDQPVILHMLDIEPAAEALNGVKMEL--IDAAFP 64
+V V GAAG IG L ++ + + L + DI A GV +L ID
Sbjct: 10 KVAVLGAAGGIGQPL-SLLLKQNPHVSE----LSLYDIVGAP----GVAADLSHIDTP-A 59
Query: 65 LLKGVVATTDVVEACKDVNIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEKHAAPN 124
+ G +A + ++ ++ G PRK GM R D+ + N I + +A+ AP
Sbjct: 60 KVTGYADGELWEKALRGADLVLICAGVPRKPGMTRDDLFNTNAPIVRDLVAAVASS-APK 118
Query: 125 CKVLVVANPANTNALILKEFAPSI----PAKNITCLTRLDHNRAMGQISERLKVHVSDVK 180
V +V+NP N+ I E P K + +T LD RA ++E L ++ DV
Sbjct: 119 AIVGIVSNPVNSTVPIAAETLKKAGVYDPRK-LFGVTTLDVVRARKFVAEALGMNPYDV- 176
Query: 181 NVIIWGNHS 189
NV + G HS
Sbjct: 177 NVPVVGGHS 185
|
Length = 321 |
| >gnl|CDD|178212 PLN02602, PLN02602, lactate dehydrogenase | Back alignment and domain information |
|---|
Score = 48.6 bits (116), Expect = 2e-06
Identities = 35/154 (22%), Positives = 71/154 (46%), Gaps = 16/154 (10%)
Query: 41 MLDIEPAAEALNGVKMELIDAAFPLLKGVVATTDVVEACKDVNIAVMVGGFPRKEGMERK 100
MLD++ AA L K ++A+TD ++ ++ G + G R
Sbjct: 79 MLDLQHAAAFLPRTK-------------ILASTDY-AVTAGSDLCIVTAGARQIPGESRL 124
Query: 101 DVMSKNVSIYKAQASALEKHAAPNCKVLVVANPANTNALILKEFAPSIPAKNITCLTRLD 160
+++ +NV++++ L K+ +P+ +L+V+NP + + + + + I T LD
Sbjct: 125 NLLQRNVALFRKIIPELAKY-SPDTILLIVSNPVDVLTYVAWKLSGFPANRVIGSGTNLD 183
Query: 161 HNRAMGQISERLKVHVSDVKNVIIWGNHSSTQYP 194
+R I++ L V+ DV+ I+ G H +
Sbjct: 184 SSRFRFLIADHLDVNAQDVQAYIV-GEHGDSSVA 216
|
Length = 350 |
| >gnl|CDD|133428 cd05292, LDH_2, A subgroup of L-lactate dehydrogenases | Back alignment and domain information |
|---|
Score = 44.8 bits (107), Expect = 3e-05
Identities = 47/168 (27%), Positives = 73/168 (43%), Gaps = 19/168 (11%)
Query: 41 MLDIEPA---AEALNGVKMELIDAAFPLLKGVVATTDVVEACKDVNIAVMVGGFPRKEGM 97
++DI A EA M+L P +K V CK ++ V+ G +K G
Sbjct: 30 LVDINKAKAEGEA-----MDLAHGT-PFVKPVRIYAGDYADCKGADVVVITAGANQKPGE 83
Query: 98 ERKDVMSKNVSIYKAQASALEKHAAPNCKVLVVANPANTNALILKEFAPSI----PAKNI 153
R D++ +NV+I+K + K+ AP+ +LVV NP + +L A + P + I
Sbjct: 84 TRLDLLKRNVAIFKEIIPQILKY-APDAILLVVTNPVD----VLTYVAYKLSGLPPNRVI 138
Query: 154 TCLTRLDHNRAMGQISERLKVHVSDVKNVIIWGNHSSTQYPDVNHATV 201
T LD R + E L V V II G H ++ + A +
Sbjct: 139 GSGTVLDTARFRYLLGEHLGVDPRSVHAYII-GEHGDSEVAVWSSANI 185
|
L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed predominantly of bacterial LDHs and a few fungal LDHs. Bacterial LDHs may be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others. Length = 308 |
| >gnl|CDD|133427 cd05291, HicDH_like, L-2-hydroxyisocapronate dehydrogenases and some bacterial L-lactate dehydrogenases | Back alignment and domain information |
|---|
Score = 40.9 bits (97), Expect = 5e-04
Identities = 37/153 (24%), Positives = 66/153 (43%), Gaps = 30/153 (19%)
Query: 77 EACKDVNIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEKHAAPNCKVLVVANPANT 136
CKD +I V+ G P+K G R D++ KN I K+ + K + + LV +NP +
Sbjct: 64 SDCKDADIVVITAGAPQKPGETRLDLLEKNAKIMKSIVPKI-KASGFDGIFLVASNPVDV 122
Query: 137 NALILKEFAPSIPAKNITCLTRLDHNRAMGQ------------ISERLKVHVSDVKNVII 184
++++ L+ L NR +G ++E+L V V ++
Sbjct: 123 ITYVVQK------------LSGLPKNRVIGTGTSLDTARLRRALAEKLNVDPRSVHAYVL 170
Query: 185 WGNHSSTQYPDVNHATVTTSKGEKPVREAVADD 217
G H +Q+ + TV G KP+ + + +
Sbjct: 171 -GEHGDSQFVAWSTVTV----GGKPLLDLLKEG 198
|
L-2-hydroxyisocapronate dehydrogenase (HicDH) catalyzes the conversion of a variety of 2-oxo carboxylic acids with medium-sized aliphatic or aromatic side chains. This subfamily is composed of HicDHs and some bacterial L-lactate dehydrogenases (LDH). LDHs catalyze the last step of glycolysis in which pyruvate is converted to L-lactate. Bacterial LDHs can be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. Members of this subfamily with known structures such as the HicDH of Lactobacillus confusus, the non-allosteric LDH of Lactobacillus pentosus, and the allosteric LDH of Bacillus stearothermophilus, show that they exist as homotetramers. The HicDH-like subfamily is part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others. Length = 306 |
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 332 | |||
| PRK05442 | 326 | malate dehydrogenase; Provisional | 100.0 | |
| TIGR01759 | 323 | MalateDH-SF1 malate dehydrogenase. This model repr | 100.0 | |
| TIGR01757 | 387 | Malate-DH_plant malate dehydrogenase, NADP-depende | 100.0 | |
| COG0039 | 313 | Mdh Malate/lactate dehydrogenases [Energy producti | 100.0 | |
| PLN00112 | 444 | malate dehydrogenase (NADP); Provisional | 100.0 | |
| cd01338 | 322 | MDH_choloroplast_like Chloroplast-like malate dehy | 100.0 | |
| cd01336 | 325 | MDH_cytoplasmic_cytosolic Cytoplasmic and cytosoli | 100.0 | |
| cd00704 | 323 | MDH Malate dehydrogenase. Malate dehydrogenase (MD | 100.0 | |
| TIGR01758 | 324 | MDH_euk_cyt malate dehydrogenase, NAD-dependent. T | 100.0 | |
| cd05295 | 452 | MDH_like Malate dehydrogenase-like. These MDH-like | 100.0 | |
| cd05290 | 307 | LDH_3 A subgroup of L-lactate dehydrogenases. L-la | 100.0 | |
| PRK00066 | 315 | ldh L-lactate dehydrogenase; Reviewed | 100.0 | |
| TIGR01771 | 299 | L-LDH-NAD L-lactate dehydrogenase. This model repr | 100.0 | |
| PLN00135 | 309 | malate dehydrogenase | 100.0 | |
| PLN02602 | 350 | lactate dehydrogenase | 100.0 | |
| KOG1495 | 332 | consensus Lactate dehydrogenase [Energy production | 100.0 | |
| KOG1496 | 332 | consensus Malate dehydrogenase [Energy production | 100.0 | |
| cd05293 | 312 | LDH_1 A subgroup of L-lactate dehydrogenases. L-la | 100.0 | |
| TIGR01756 | 313 | LDH_protist lactate dehydrogenase. This model repr | 100.0 | |
| cd05291 | 306 | HicDH_like L-2-hydroxyisocapronate dehydrogenases | 100.0 | |
| cd00300 | 300 | LDH_like L-lactate dehydrogenase-like enzymes. Mem | 100.0 | |
| cd01337 | 310 | MDH_glyoxysomal_mitochondrial Glyoxysomal and mito | 100.0 | |
| TIGR01772 | 312 | MDH_euk_gproteo malate dehydrogenase, NAD-dependen | 100.0 | |
| PTZ00325 | 321 | malate dehydrogenase; Provisional | 100.0 | |
| PTZ00117 | 319 | malate dehydrogenase; Provisional | 100.0 | |
| PTZ00082 | 321 | L-lactate dehydrogenase; Provisional | 100.0 | |
| cd05292 | 308 | LDH_2 A subgroup of L-lactate dehydrogenases. L-la | 100.0 | |
| cd05294 | 309 | LDH-like_MDH_nadp A lactate dehydrogenases-like st | 100.0 | |
| TIGR01763 | 305 | MalateDH_bact malate dehydrogenase, NAD-dependent. | 100.0 | |
| PLN00106 | 323 | malate dehydrogenase | 100.0 | |
| PRK05086 | 312 | malate dehydrogenase; Provisional | 100.0 | |
| PRK06223 | 307 | malate dehydrogenase; Reviewed | 100.0 | |
| cd01339 | 300 | LDH-like_MDH L-lactate dehydrogenase-like malate d | 100.0 | |
| KOG1494 | 345 | consensus NAD-dependent malate dehydrogenase [Ener | 100.0 | |
| cd00650 | 263 | LDH_MDH_like NAD-dependent, lactate dehydrogenase- | 100.0 | |
| PF02866 | 174 | Ldh_1_C: lactate/malate dehydrogenase, alpha/beta | 100.0 | |
| PF00056 | 141 | Ldh_1_N: lactate/malate dehydrogenase, NAD binding | 99.96 | |
| cd05298 | 437 | GH4_GlvA_pagL_like Glycoside Hydrolases Family 4; | 99.88 | |
| cd05197 | 425 | GH4_glycoside_hydrolases Glycoside Hydrases Family | 99.87 | |
| PRK15076 | 431 | alpha-galactosidase; Provisional | 99.86 | |
| cd05296 | 419 | GH4_P_beta_glucosidase Glycoside Hydrolases Family | 99.84 | |
| cd05297 | 423 | GH4_alpha_glucosidase_galactosidase Glycoside Hydr | 99.78 | |
| COG1486 | 442 | CelF Alpha-galactosidases/6-phospho-beta-glucosida | 99.68 | |
| COG1087 | 329 | GalE UDP-glucose 4-epimerase [Cell envelope biogen | 99.61 | |
| KOG1502 | 327 | consensus Flavonol reductase/cinnamoyl-CoA reducta | 99.59 | |
| PRK15181 | 348 | Vi polysaccharide biosynthesis protein TviC; Provi | 99.51 | |
| PF01073 | 280 | 3Beta_HSD: 3-beta hydroxysteroid dehydrogenase/iso | 99.49 | |
| KOG1429 | 350 | consensus dTDP-glucose 4-6-dehydratase/UDP-glucuro | 99.48 | |
| PF02719 | 293 | Polysacc_synt_2: Polysaccharide biosynthesis prote | 99.48 | |
| PLN02166 | 436 | dTDP-glucose 4,6-dehydratase | 99.47 | |
| PLN00198 | 338 | anthocyanidin reductase; Provisional | 99.47 | |
| COG1088 | 340 | RfbB dTDP-D-glucose 4,6-dehydratase [Cell envelope | 99.46 | |
| PF02056 | 183 | Glyco_hydro_4: Family 4 glycosyl hydrolase; InterP | 99.45 | |
| PLN02206 | 442 | UDP-glucuronate decarboxylase | 99.43 | |
| PLN02650 | 351 | dihydroflavonol-4-reductase | 99.42 | |
| PLN02695 | 370 | GDP-D-mannose-3',5'-epimerase | 99.41 | |
| PLN02572 | 442 | UDP-sulfoquinovose synthase | 99.41 | |
| COG1086 | 588 | Predicted nucleoside-diphosphate sugar epimerases | 99.39 | |
| TIGR02622 | 349 | CDP_4_6_dhtase CDP-glucose 4,6-dehydratase. Member | 99.37 | |
| PLN02427 | 386 | UDP-apiose/xylose synthase | 99.37 | |
| PLN02989 | 325 | cinnamyl-alcohol dehydrogenase family protein | 99.35 | |
| PLN02662 | 322 | cinnamyl-alcohol dehydrogenase family protein | 99.35 | |
| PRK08125 | 660 | bifunctional UDP-glucuronic acid decarboxylase/UDP | 99.33 | |
| PRK11908 | 347 | NAD-dependent epimerase/dehydratase family protein | 99.33 | |
| PLN02896 | 353 | cinnamyl-alcohol dehydrogenase | 99.33 | |
| PRK09987 | 299 | dTDP-4-dehydrorhamnose reductase; Provisional | 99.33 | |
| TIGR03589 | 324 | PseB UDP-N-acetylglucosamine 4,6-dehydratase. This | 99.32 | |
| PLN02986 | 322 | cinnamyl-alcohol dehydrogenase family protein | 99.31 | |
| PLN02214 | 342 | cinnamoyl-CoA reductase | 99.31 | |
| PRK10217 | 355 | dTDP-glucose 4,6-dehydratase; Provisional | 99.29 | |
| COG0451 | 314 | WcaG Nucleoside-diphosphate-sugar epimerases [Cell | 99.29 | |
| TIGR01472 | 343 | gmd GDP-mannose 4,6-dehydratase. Excluded from thi | 99.28 | |
| PLN02260 | 668 | probable rhamnose biosynthetic enzyme | 99.27 | |
| PRK10084 | 352 | dTDP-glucose 4,6 dehydratase; Provisional | 99.24 | |
| PRK11150 | 308 | rfaD ADP-L-glycero-D-mannoheptose-6-epimerase; Pro | 99.23 | |
| KOG1430 | 361 | consensus C-3 sterol dehydrogenase/3-beta-hydroxys | 99.22 | |
| PLN02583 | 297 | cinnamoyl-CoA reductase | 99.21 | |
| PLN02686 | 367 | cinnamoyl-CoA reductase | 99.19 | |
| KOG1371 | 343 | consensus UDP-glucose 4-epimerase/UDP-sulfoquinovo | 99.15 | |
| TIGR01181 | 317 | dTDP_gluc_dehyt dTDP-glucose 4,6-dehydratase. This | 99.14 | |
| PLN02240 | 352 | UDP-glucose 4-epimerase | 99.13 | |
| PLN02653 | 340 | GDP-mannose 4,6-dehydratase | 99.11 | |
| PF01370 | 236 | Epimerase: NAD dependent epimerase/dehydratase fam | 99.09 | |
| PRK10675 | 338 | UDP-galactose-4-epimerase; Provisional | 99.08 | |
| TIGR03466 | 328 | HpnA hopanoid-associated sugar epimerase. The sequ | 99.07 | |
| PLN02778 | 298 | 3,5-epimerase/4-reductase | 99.02 | |
| PLN02725 | 306 | GDP-4-keto-6-deoxymannose-3,5-epimerase-4-reductas | 98.93 | |
| PRK09135 | 249 | pteridine reductase; Provisional | 98.93 | |
| TIGR02197 | 314 | heptose_epim ADP-L-glycero-D-manno-heptose-6-epime | 98.92 | |
| PRK06194 | 287 | hypothetical protein; Provisional | 98.91 | |
| TIGR01214 | 287 | rmlD dTDP-4-dehydrorhamnose reductase. This enzyme | 98.91 | |
| CHL00194 | 317 | ycf39 Ycf39; Provisional | 98.9 | |
| TIGR01777 | 292 | yfcH conserved hypothetical protein TIGR01777. Thi | 98.88 | |
| PRK05865 | 854 | hypothetical protein; Provisional | 98.85 | |
| PRK07201 | 657 | short chain dehydrogenase; Provisional | 98.83 | |
| PLN02996 | 491 | fatty acyl-CoA reductase | 98.8 | |
| TIGR01179 | 328 | galE UDP-glucose-4-epimerase. This enzyme intercon | 98.8 | |
| PRK07067 | 257 | sorbitol dehydrogenase; Provisional | 98.75 | |
| PRK06180 | 277 | short chain dehydrogenase; Provisional | 98.75 | |
| PRK13394 | 262 | 3-hydroxybutyrate dehydrogenase; Provisional | 98.74 | |
| PRK06482 | 276 | short chain dehydrogenase; Provisional | 98.74 | |
| PLN02260 | 668 | probable rhamnose biosynthetic enzyme | 98.7 | |
| PRK07806 | 248 | short chain dehydrogenase; Provisional | 98.69 | |
| COG1091 | 281 | RfbD dTDP-4-dehydrorhamnose reductase [Cell envelo | 98.69 | |
| PLN03209 | 576 | translocon at the inner envelope of chloroplast su | 98.68 | |
| PRK05653 | 246 | fabG 3-ketoacyl-(acyl-carrier-protein) reductase; | 98.68 | |
| PRK07523 | 255 | gluconate 5-dehydrogenase; Provisional | 98.68 | |
| PRK06500 | 249 | short chain dehydrogenase; Provisional | 98.67 | |
| PRK06138 | 252 | short chain dehydrogenase; Provisional | 98.66 | |
| PRK07231 | 251 | fabG 3-ketoacyl-(acyl-carrier-protein) reductase; | 98.65 | |
| PRK12746 | 254 | short chain dehydrogenase; Provisional | 98.64 | |
| PRK07890 | 258 | short chain dehydrogenase; Provisional | 98.62 | |
| PRK07774 | 250 | short chain dehydrogenase; Provisional | 98.62 | |
| PF04321 | 286 | RmlD_sub_bind: RmlD substrate binding domain; Inte | 98.61 | |
| PRK12429 | 258 | 3-hydroxybutyrate dehydrogenase; Provisional | 98.61 | |
| PRK06128 | 300 | oxidoreductase; Provisional | 98.6 | |
| PRK08278 | 273 | short chain dehydrogenase; Provisional | 98.58 | |
| PRK05717 | 255 | oxidoreductase; Validated | 98.58 | |
| PRK05875 | 276 | short chain dehydrogenase; Provisional | 98.56 | |
| PRK12829 | 264 | short chain dehydrogenase; Provisional | 98.56 | |
| PRK12823 | 260 | benD 1,6-dihydroxycyclohexa-2,4-diene-1-carboxylat | 98.56 | |
| COG4221 | 246 | Short-chain alcohol dehydrogenase of unknown speci | 98.56 | |
| PRK12937 | 245 | short chain dehydrogenase; Provisional | 98.55 | |
| PRK08642 | 253 | fabG 3-ketoacyl-(acyl-carrier-protein) reductase; | 98.55 | |
| PLN02657 | 390 | 3,8-divinyl protochlorophyllide a 8-vinyl reductas | 98.54 | |
| PLN02253 | 280 | xanthoxin dehydrogenase | 98.54 | |
| PRK07326 | 237 | short chain dehydrogenase; Provisional | 98.54 | |
| PRK12320 | 699 | hypothetical protein; Provisional | 98.54 | |
| PRK10538 | 248 | malonic semialdehyde reductase; Provisional | 98.54 | |
| PRK12828 | 239 | short chain dehydrogenase; Provisional | 98.54 | |
| PRK07024 | 257 | short chain dehydrogenase; Provisional | 98.54 | |
| COG0300 | 265 | DltE Short-chain dehydrogenases of various substra | 98.53 | |
| PRK06077 | 252 | fabG 3-ketoacyl-(acyl-carrier-protein) reductase; | 98.53 | |
| PRK12936 | 245 | 3-ketoacyl-(acyl-carrier-protein) reductase NodG; | 98.53 | |
| PRK08267 | 260 | short chain dehydrogenase; Provisional | 98.53 | |
| TIGR01963 | 255 | PHB_DH 3-hydroxybutyrate dehydrogenase. This model | 98.52 | |
| PRK12826 | 251 | 3-ketoacyl-(acyl-carrier-protein) reductase; Revie | 98.52 | |
| PF07993 | 249 | NAD_binding_4: Male sterility protein; InterPro: I | 98.52 | |
| PRK07453 | 322 | protochlorophyllide oxidoreductase; Validated | 98.52 | |
| PRK06935 | 258 | 2-deoxy-D-gluconate 3-dehydrogenase; Provisional | 98.52 | |
| TIGR03325 | 262 | BphB_TodD cis-2,3-dihydrobiphenyl-2,3-diol dehydro | 98.51 | |
| PRK06101 | 240 | short chain dehydrogenase; Provisional | 98.51 | |
| PRK06196 | 315 | oxidoreductase; Provisional | 98.5 | |
| PRK07060 | 245 | short chain dehydrogenase; Provisional | 98.5 | |
| PRK08265 | 261 | short chain dehydrogenase; Provisional | 98.5 | |
| PRK06179 | 270 | short chain dehydrogenase; Provisional | 98.49 | |
| PRK05786 | 238 | fabG 3-ketoacyl-(acyl-carrier-protein) reductase; | 98.49 | |
| TIGR01746 | 367 | Thioester-redct thioester reductase domain. It has | 98.49 | |
| PRK08628 | 258 | short chain dehydrogenase; Provisional | 98.49 | |
| PRK08213 | 259 | gluconate 5-dehydrogenase; Provisional | 98.48 | |
| PRK08264 | 238 | short chain dehydrogenase; Validated | 98.48 | |
| PRK05993 | 277 | short chain dehydrogenase; Provisional | 98.48 | |
| PRK08263 | 275 | short chain dehydrogenase; Provisional | 98.48 | |
| COG1090 | 297 | Predicted nucleoside-diphosphate sugar epimerase [ | 98.48 | |
| PRK06172 | 253 | short chain dehydrogenase; Provisional | 98.48 | |
| TIGR03206 | 250 | benzo_BadH 2-hydroxycyclohexanecarboxyl-CoA dehydr | 98.47 | |
| PRK12825 | 249 | fabG 3-ketoacyl-(acyl-carrier-protein) reductase; | 98.47 | |
| PRK07478 | 254 | short chain dehydrogenase; Provisional | 98.47 | |
| PF03721 | 185 | UDPG_MGDP_dh_N: UDP-glucose/GDP-mannose dehydrogen | 98.46 | |
| PRK07856 | 252 | short chain dehydrogenase; Provisional | 98.46 | |
| PRK07666 | 239 | fabG 3-ketoacyl-(acyl-carrier-protein) reductase; | 98.45 | |
| PRK08643 | 256 | acetoin reductase; Validated | 98.45 | |
| PRK12744 | 257 | short chain dehydrogenase; Provisional | 98.45 | |
| PRK07102 | 243 | short chain dehydrogenase; Provisional | 98.45 | |
| TIGR01832 | 248 | kduD 2-deoxy-D-gluconate 3-dehydrogenase. This mod | 98.45 | |
| PRK05557 | 248 | fabG 3-ketoacyl-(acyl-carrier-protein) reductase; | 98.45 | |
| PRK05565 | 247 | fabG 3-ketoacyl-(acyl-carrier-protein) reductase; | 98.45 | |
| PRK07814 | 263 | short chain dehydrogenase; Provisional | 98.45 | |
| PRK06197 | 306 | short chain dehydrogenase; Provisional | 98.45 | |
| PRK05876 | 275 | short chain dehydrogenase; Provisional | 98.44 | |
| COG1004 | 414 | Ugd Predicted UDP-glucose 6-dehydrogenase [Cell en | 98.44 | |
| PRK07825 | 273 | short chain dehydrogenase; Provisional | 98.44 | |
| PRK07985 | 294 | oxidoreductase; Provisional | 98.44 | |
| PRK12747 | 252 | short chain dehydrogenase; Provisional | 98.44 | |
| PF13460 | 183 | NAD_binding_10: NADH(P)-binding ; PDB: 3OH8_A 3E8X | 98.43 | |
| PRK12827 | 249 | short chain dehydrogenase; Provisional | 98.43 | |
| PRK12384 | 259 | sorbitol-6-phosphate dehydrogenase; Provisional | 98.43 | |
| PRK12935 | 247 | acetoacetyl-CoA reductase; Provisional | 98.43 | |
| PRK07069 | 251 | short chain dehydrogenase; Validated | 98.43 | |
| PRK08085 | 254 | gluconate 5-dehydrogenase; Provisional | 98.42 | |
| PRK12745 | 256 | 3-ketoacyl-(acyl-carrier-protein) reductase; Provi | 98.42 | |
| PRK07576 | 264 | short chain dehydrogenase; Provisional | 98.41 | |
| PRK08219 | 227 | short chain dehydrogenase; Provisional | 98.41 | |
| PRK08226 | 263 | short chain dehydrogenase; Provisional | 98.39 | |
| PRK06182 | 273 | short chain dehydrogenase; Validated | 98.38 | |
| PRK06200 | 263 | 2,3-dihydroxy-2,3-dihydrophenylpropionate dehydrog | 98.38 | |
| PRK06701 | 290 | short chain dehydrogenase; Provisional | 98.36 | |
| PRK06914 | 280 | short chain dehydrogenase; Provisional | 98.36 | |
| PRK09134 | 258 | short chain dehydrogenase; Provisional | 98.36 | |
| PRK09072 | 263 | short chain dehydrogenase; Provisional | 98.35 | |
| PRK07775 | 274 | short chain dehydrogenase; Provisional | 98.35 | |
| PRK07454 | 241 | short chain dehydrogenase; Provisional | 98.35 | |
| PRK06113 | 255 | 7-alpha-hydroxysteroid dehydrogenase; Validated | 98.35 | |
| PRK08220 | 252 | 2,3-dihydroxybenzoate-2,3-dehydrogenase; Validated | 98.35 | |
| PRK06123 | 248 | short chain dehydrogenase; Provisional | 98.35 | |
| PRK06924 | 251 | short chain dehydrogenase; Provisional | 98.35 | |
| PRK06124 | 256 | gluconate 5-dehydrogenase; Provisional | 98.34 | |
| PRK12742 | 237 | oxidoreductase; Provisional | 98.34 | |
| PRK12939 | 250 | short chain dehydrogenase; Provisional | 98.34 | |
| PRK07063 | 260 | short chain dehydrogenase; Provisional | 98.34 | |
| PRK06841 | 255 | short chain dehydrogenase; Provisional | 98.33 | |
| PRK06398 | 258 | aldose dehydrogenase; Validated | 98.33 | |
| PRK05866 | 293 | short chain dehydrogenase; Provisional | 98.33 | |
| PRK07097 | 265 | gluconate 5-dehydrogenase; Provisional | 98.31 | |
| PRK08339 | 263 | short chain dehydrogenase; Provisional | 98.31 | |
| PRK07035 | 252 | short chain dehydrogenase; Provisional | 98.3 | |
| PRK06181 | 263 | short chain dehydrogenase; Provisional | 98.3 | |
| PRK12481 | 251 | 2-deoxy-D-gluconate 3-dehydrogenase; Provisional | 98.3 | |
| PRK08993 | 253 | 2-deoxy-D-gluconate 3-dehydrogenase; Validated | 98.29 | |
| PRK07023 | 243 | short chain dehydrogenase; Provisional | 98.29 | |
| PRK07109 | 334 | short chain dehydrogenase; Provisional | 98.29 | |
| PLN00141 | 251 | Tic62-NAD(P)-related group II protein; Provisional | 98.29 | |
| PRK08277 | 278 | D-mannonate oxidoreductase; Provisional | 98.29 | |
| PRK07819 | 286 | 3-hydroxybutyryl-CoA dehydrogenase; Validated | 98.28 | |
| PRK06463 | 255 | fabG 3-ketoacyl-(acyl-carrier-protein) reductase; | 98.28 | |
| PRK06550 | 235 | fabG 3-ketoacyl-(acyl-carrier-protein) reductase; | 98.28 | |
| PRK05884 | 223 | short chain dehydrogenase; Provisional | 98.28 | |
| PF02737 | 180 | 3HCDH_N: 3-hydroxyacyl-CoA dehydrogenase, NAD bind | 98.27 | |
| PRK08589 | 272 | short chain dehydrogenase; Validated | 98.27 | |
| PRK06171 | 266 | sorbitol-6-phosphate 2-dehydrogenase; Provisional | 98.27 | |
| PRK09291 | 257 | short chain dehydrogenase; Provisional | 98.26 | |
| PRK05650 | 270 | short chain dehydrogenase; Provisional | 98.26 | |
| PRK08945 | 247 | putative oxoacyl-(acyl carrier protein) reductase; | 98.25 | |
| PRK09186 | 256 | flagellin modification protein A; Provisional | 98.25 | |
| PRK05693 | 274 | short chain dehydrogenase; Provisional | 98.23 | |
| PRK08177 | 225 | short chain dehydrogenase; Provisional | 98.23 | |
| PRK08063 | 250 | enoyl-(acyl carrier protein) reductase; Provisiona | 98.22 | |
| PLN02503 | 605 | fatty acyl-CoA reductase 2 | 98.22 | |
| PRK07074 | 257 | short chain dehydrogenase; Provisional | 98.21 | |
| PRK05867 | 253 | short chain dehydrogenase; Provisional | 98.2 | |
| PRK09242 | 257 | tropinone reductase; Provisional | 98.2 | |
| PRK08340 | 259 | glucose-1-dehydrogenase; Provisional | 98.2 | |
| PRK07792 | 306 | fabG 3-ketoacyl-(acyl-carrier-protein) reductase; | 98.19 | |
| PRK06139 | 330 | short chain dehydrogenase; Provisional | 98.19 | |
| PRK07424 | 406 | bifunctional sterol desaturase/short chain dehydro | 98.19 | |
| PRK06057 | 255 | short chain dehydrogenase; Provisional | 98.19 | |
| PRK08703 | 239 | short chain dehydrogenase; Provisional | 98.18 | |
| PRK06949 | 258 | short chain dehydrogenase; Provisional | 98.18 | |
| PRK08217 | 253 | fabG 3-ketoacyl-(acyl-carrier-protein) reductase; | 98.17 | |
| TIGR01830 | 239 | 3oxo_ACP_reduc 3-oxoacyl-(acyl-carrier-protein) re | 98.17 | |
| KOG1431 | 315 | consensus GDP-L-fucose synthetase [Carbohydrate tr | 98.17 | |
| PRK06523 | 260 | short chain dehydrogenase; Provisional | 98.16 | |
| PLN00016 | 378 | RNA-binding protein; Provisional | 98.16 | |
| PRK06484 | 520 | short chain dehydrogenase; Validated | 98.16 | |
| PRK08251 | 248 | short chain dehydrogenase; Provisional | 98.16 | |
| PRK12938 | 246 | acetyacetyl-CoA reductase; Provisional | 98.15 | |
| PRK06198 | 260 | short chain dehydrogenase; Provisional | 98.15 | |
| PRK08324 | 681 | short chain dehydrogenase; Validated | 98.14 | |
| PRK06114 | 254 | short chain dehydrogenase; Provisional | 98.14 | |
| PRK07904 | 253 | short chain dehydrogenase; Provisional | 98.14 | |
| PRK06947 | 248 | glucose-1-dehydrogenase; Provisional | 98.13 | |
| KOG0747 | 331 | consensus Putative NAD+-dependent epimerases [Carb | 98.11 | |
| PRK07066 | 321 | 3-hydroxybutyryl-CoA dehydrogenase; Validated | 98.11 | |
| PRK07578 | 199 | short chain dehydrogenase; Provisional | 98.11 | |
| PRK07832 | 272 | short chain dehydrogenase; Provisional | 98.1 | |
| PRK12824 | 245 | acetoacetyl-CoA reductase; Provisional | 98.09 | |
| TIGR03443 | 1389 | alpha_am_amid L-aminoadipate-semialdehyde dehydrog | 98.09 | |
| PRK09730 | 247 | putative NAD(P)-binding oxidoreductase; Provisiona | 98.09 | |
| KOG1205 | 282 | consensus Predicted dehydrogenase [Secondary metab | 98.09 | |
| PRK05854 | 313 | short chain dehydrogenase; Provisional | 98.07 | |
| PRK08416 | 260 | 7-alpha-hydroxysteroid dehydrogenase; Provisional | 98.07 | |
| PRK05855 | 582 | short chain dehydrogenase; Validated | 98.06 | |
| TIGR02632 | 676 | RhaD_aldol-ADH rhamnulose-1-phosphate aldolase/alc | 98.06 | |
| PRK08415 | 274 | enoyl-(acyl carrier protein) reductase; Provisiona | 98.06 | |
| PRK12743 | 256 | oxidoreductase; Provisional | 98.06 | |
| PRK07577 | 234 | short chain dehydrogenase; Provisional | 98.05 | |
| PRK08936 | 261 | glucose-1-dehydrogenase; Provisional | 98.05 | |
| PRK08293 | 287 | 3-hydroxybutyryl-CoA dehydrogenase; Validated | 98.04 | |
| TIGR02415 | 254 | 23BDH acetoin reductases. One member of this famil | 98.04 | |
| PRK12367 | 245 | short chain dehydrogenase; Provisional | 98.0 | |
| PLN02353 | 473 | probable UDP-glucose 6-dehydrogenase | 97.99 | |
| PRK06953 | 222 | short chain dehydrogenase; Provisional | 97.98 | |
| PRK07677 | 252 | short chain dehydrogenase; Provisional | 97.97 | |
| PRK12748 | 256 | 3-ketoacyl-(acyl-carrier-protein) reductase; Provi | 97.97 | |
| PRK06483 | 236 | dihydromonapterin reductase; Provisional | 97.96 | |
| PF01210 | 157 | NAD_Gly3P_dh_N: NAD-dependent glycerol-3-phosphate | 97.96 | |
| COG2910 | 211 | Putative NADH-flavin reductase [General function p | 97.96 | |
| PRK08261 | 450 | fabG 3-ketoacyl-(acyl-carrier-protein) reductase; | 97.94 | |
| PRK06940 | 275 | short chain dehydrogenase; Provisional | 97.93 | |
| PRK05872 | 296 | short chain dehydrogenase; Provisional | 97.93 | |
| PRK07889 | 256 | enoyl-(acyl carrier protein) reductase; Provisiona | 97.93 | |
| TIGR01831 | 239 | fabG_rel 3-oxoacyl-(acyl-carrier-protein) reductas | 97.93 | |
| TIGR02685 | 267 | pter_reduc_Leis pteridine reductase. Pteridine red | 97.93 | |
| PRK07062 | 265 | short chain dehydrogenase; Provisional | 97.92 | |
| TIGR03649 | 285 | ergot_EASG ergot alkaloid biosynthesis protein, AF | 97.92 | |
| PRK07370 | 258 | enoyl-(acyl carrier protein) reductase; Validated | 97.92 | |
| PRK06484 | 520 | short chain dehydrogenase; Validated | 97.92 | |
| PLN02780 | 320 | ketoreductase/ oxidoreductase | 97.9 | |
| PRK07533 | 258 | enoyl-(acyl carrier protein) reductase; Provisiona | 97.9 | |
| PRK09009 | 235 | C factor cell-cell signaling protein; Provisional | 97.88 | |
| TIGR01829 | 242 | AcAcCoA_reduct acetoacetyl-CoA reductase. (R)-3-hy | 97.88 | |
| COG0240 | 329 | GpsA Glycerol-3-phosphate dehydrogenase [Energy pr | 97.87 | |
| COG1748 | 389 | LYS9 Saccharopine dehydrogenase and related protei | 97.87 | |
| COG3320 | 382 | Putative dehydrogenase domain of multifunctional n | 97.87 | |
| PRK07831 | 262 | short chain dehydrogenase; Provisional | 97.86 | |
| PRK07201 | 657 | short chain dehydrogenase; Provisional | 97.86 | |
| PRK06130 | 311 | 3-hydroxybutyryl-CoA dehydrogenase; Validated | 97.84 | |
| PRK06505 | 271 | enoyl-(acyl carrier protein) reductase; Provisiona | 97.84 | |
| TIGR01915 | 219 | npdG NADPH-dependent F420 reductase. This model re | 97.84 | |
| TIGR03026 | 411 | NDP-sugDHase nucleotide sugar dehydrogenase. All o | 97.83 | |
| PRK07791 | 286 | short chain dehydrogenase; Provisional | 97.81 | |
| PRK08017 | 256 | oxidoreductase; Provisional | 97.8 | |
| PF00106 | 167 | adh_short: short chain dehydrogenase alcohol dehyd | 97.8 | |
| PRK08862 | 227 | short chain dehydrogenase; Provisional | 97.79 | |
| PRK06125 | 259 | short chain dehydrogenase; Provisional | 97.79 | |
| COG1250 | 307 | FadB 3-hydroxyacyl-CoA dehydrogenase [Lipid metabo | 97.79 | |
| PRK06079 | 252 | enoyl-(acyl carrier protein) reductase; Provisiona | 97.78 | |
| PRK08594 | 257 | enoyl-(acyl carrier protein) reductase; Provisiona | 97.78 | |
| PRK05808 | 282 | 3-hydroxybutyryl-CoA dehydrogenase; Validated | 97.78 | |
| PRK07530 | 292 | 3-hydroxybutyryl-CoA dehydrogenase; Validated | 97.78 | |
| PRK07984 | 262 | enoyl-(acyl carrier protein) reductase; Provisiona | 97.76 | |
| PF05368 | 233 | NmrA: NmrA-like family; InterPro: IPR008030 NmrA i | 97.75 | |
| PRK08690 | 261 | enoyl-(acyl carrier protein) reductase; Provisiona | 97.73 | |
| PRK07041 | 230 | short chain dehydrogenase; Provisional | 97.73 | |
| PRK06603 | 260 | enoyl-(acyl carrier protein) reductase; Provisiona | 97.71 | |
| PRK14982 | 340 | acyl-ACP reductase; Provisional | 97.7 | |
| PRK08159 | 272 | enoyl-(acyl carrier protein) reductase; Provisiona | 97.69 | |
| PRK06129 | 308 | 3-hydroxyacyl-CoA dehydrogenase; Validated | 97.69 | |
| COG1089 | 345 | Gmd GDP-D-mannose dehydratase [Cell envelope bioge | 97.69 | |
| PRK09260 | 288 | 3-hydroxybutyryl-CoA dehydrogenase; Validated | 97.68 | |
| PRK05599 | 246 | hypothetical protein; Provisional | 97.67 | |
| PF03446 | 163 | NAD_binding_2: NAD binding domain of 6-phosphogluc | 97.67 | |
| PRK08303 | 305 | short chain dehydrogenase; Provisional | 97.65 | |
| TIGR01500 | 256 | sepiapter_red sepiapterin reductase. This model de | 97.65 | |
| PLN02545 | 295 | 3-hydroxybutyryl-CoA dehydrogenase | 97.64 | |
| PRK15057 | 388 | UDP-glucose 6-dehydrogenase; Provisional | 97.63 | |
| PRK12859 | 256 | 3-ketoacyl-(acyl-carrier-protein) reductase; Provi | 97.63 | |
| PRK11730 | 715 | fadB multifunctional fatty acid oxidation complex | 97.6 | |
| PRK11154 | 708 | fadJ multifunctional fatty acid oxidation complex | 97.59 | |
| TIGR02440 | 699 | FadJ fatty oxidation complex, alpha subunit FadJ. | 97.59 | |
| PRK06249 | 313 | 2-dehydropantoate 2-reductase; Provisional | 97.58 | |
| PRK12921 | 305 | 2-dehydropantoate 2-reductase; Provisional | 97.58 | |
| PRK06997 | 260 | enoyl-(acyl carrier protein) reductase; Provisiona | 97.58 | |
| COG3967 | 245 | DltE Short-chain dehydrogenase involved in D-alani | 97.57 | |
| TIGR02437 | 714 | FadB fatty oxidation complex, alpha subunit FadB. | 97.57 | |
| PRK06035 | 291 | 3-hydroxyacyl-CoA dehydrogenase; Validated | 97.56 | |
| PRK08268 | 507 | 3-hydroxy-acyl-CoA dehydrogenase; Validated | 97.53 | |
| PRK07531 | 495 | bifunctional 3-hydroxyacyl-CoA dehydrogenase/thioe | 97.52 | |
| smart00822 | 180 | PKS_KR This enzymatic domain is part of bacterial | 97.49 | |
| TIGR02441 | 737 | fa_ox_alpha_mit fatty acid oxidation complex, alph | 97.48 | |
| KOG1201 | 300 | consensus Hydroxysteroid 17-beta dehydrogenase 11 | 97.46 | |
| PRK00094 | 325 | gpsA NAD(P)H-dependent glycerol-3-phosphate dehydr | 97.45 | |
| PRK15182 | 425 | Vi polysaccharide biosynthesis protein TviB; Provi | 97.45 | |
| PRK11064 | 415 | wecC UDP-N-acetyl-D-mannosamine dehydrogenase; Pro | 97.44 | |
| PRK06720 | 169 | hypothetical protein; Provisional | 97.44 | |
| KOG4169 | 261 | consensus 15-hydroxyprostaglandin dehydrogenase an | 97.43 | |
| PRK08229 | 341 | 2-dehydropantoate 2-reductase; Provisional | 97.42 | |
| TIGR02279 | 503 | PaaC-3OHAcCoADH 3-hydroxyacyl-CoA dehydrogenase Pa | 97.41 | |
| PF03807 | 96 | F420_oxidored: NADP oxidoreductase coenzyme F420-d | 97.41 | |
| PF01118 | 121 | Semialdhyde_dh: Semialdehyde dehydrogenase, NAD bi | 97.39 | |
| PRK12439 | 341 | NAD(P)H-dependent glycerol-3-phosphate dehydrogena | 97.38 | |
| TIGR03376 | 342 | glycerol3P_DH glycerol-3-phosphate dehydrogenase ( | 97.35 | |
| PRK06522 | 304 | 2-dehydropantoate 2-reductase; Reviewed | 97.35 | |
| TIGR01289 | 314 | LPOR light-dependent protochlorophyllide reductase | 97.35 | |
| COG2085 | 211 | Predicted dinucleotide-binding enzymes [General fu | 97.32 | |
| PRK14618 | 328 | NAD(P)H-dependent glycerol-3-phosphate dehydrogena | 97.28 | |
| KOG2774 | 366 | consensus NAD dependent epimerase [General functio | 97.19 | |
| PTZ00345 | 365 | glycerol-3-phosphate dehydrogenase; Provisional | 97.16 | |
| PRK14620 | 326 | NAD(P)H-dependent glycerol-3-phosphate dehydrogena | 97.12 | |
| COG0702 | 275 | Predicted nucleoside-diphosphate-sugar epimerases | 97.12 | |
| KOG2304 | 298 | consensus 3-hydroxyacyl-CoA dehydrogenase [Lipid t | 97.11 | |
| PRK14619 | 308 | NAD(P)H-dependent glycerol-3-phosphate dehydrogena | 97.1 | |
| PRK08655 | 437 | prephenate dehydrogenase; Provisional | 97.07 | |
| cd01078 | 194 | NAD_bind_H4MPT_DH NADP binding domain of methylene | 97.03 | |
| PRK09620 | 229 | hypothetical protein; Provisional | 97.02 | |
| PF08659 | 181 | KR: KR domain; InterPro: IPR013968 This domain is | 96.94 | |
| PF01488 | 135 | Shikimate_DH: Shikimate / quinate 5-dehydrogenase; | 96.88 | |
| PLN02730 | 303 | enoyl-[acyl-carrier-protein] reductase | 96.85 | |
| COG1028 | 251 | FabG Dehydrogenases with different specificities ( | 96.85 | |
| PF02558 | 151 | ApbA: Ketopantoate reductase PanE/ApbA; InterPro: | 96.83 | |
| COG1893 | 307 | ApbA Ketopantoate reductase [Coenzyme metabolism] | 96.81 | |
| PRK07502 | 307 | cyclohexadienyl dehydrogenase; Validated | 96.75 | |
| PRK06928 | 277 | pyrroline-5-carboxylate reductase; Reviewed | 96.74 | |
| PLN00015 | 308 | protochlorophyllide reductase | 96.72 | |
| PRK12549 | 284 | shikimate 5-dehydrogenase; Reviewed | 96.71 | |
| KOG1200 | 256 | consensus Mitochondrial/plastidial beta-ketoacyl-A | 96.71 | |
| KOG1221 | 467 | consensus Acyl-CoA reductase [Lipid transport and | 96.7 | |
| PRK05671 | 336 | aspartate-semialdehyde dehydrogenase; Reviewed | 96.68 | |
| PF03435 | 386 | Saccharop_dh: Saccharopine dehydrogenase ; InterPr | 96.67 | |
| PRK07634 | 245 | pyrroline-5-carboxylate reductase; Reviewed | 96.66 | |
| KOG1208 | 314 | consensus Dehydrogenases with different specificit | 96.6 | |
| PRK06728 | 347 | aspartate-semialdehyde dehydrogenase; Provisional | 96.59 | |
| PRK07680 | 273 | late competence protein ComER; Validated | 96.57 | |
| PRK07679 | 279 | pyrroline-5-carboxylate reductase; Reviewed | 96.55 | |
| COG0677 | 436 | WecC UDP-N-acetyl-D-mannosaminuronate dehydrogenas | 96.54 | |
| PRK11880 | 267 | pyrroline-5-carboxylate reductase; Reviewed | 96.53 | |
| PRK07417 | 279 | arogenate dehydrogenase; Reviewed | 96.53 | |
| COG0569 | 225 | TrkA K+ transport systems, NAD-binding component [ | 96.45 | |
| PRK15461 | 296 | NADH-dependent gamma-hydroxybutyrate dehydrogenase | 96.42 | |
| PLN02688 | 266 | pyrroline-5-carboxylate reductase | 96.41 | |
| PRK12480 | 330 | D-lactate dehydrogenase; Provisional | 96.4 | |
| KOG2865 | 391 | consensus NADH:ubiquinone oxidoreductase, NDUFA9/3 | 96.4 | |
| PF10727 | 127 | Rossmann-like: Rossmann-like domain; InterPro: IPR | 96.38 | |
| PRK05708 | 305 | 2-dehydropantoate 2-reductase; Provisional | 96.38 | |
| PLN02968 | 381 | Probable N-acetyl-gamma-glutamyl-phosphate reducta | 96.36 | |
| TIGR00872 | 298 | gnd_rel 6-phosphogluconate dehydrogenase (decarbox | 96.32 | |
| PTZ00142 | 470 | 6-phosphogluconate dehydrogenase; Provisional | 96.32 | |
| cd05312 | 279 | NAD_bind_1_malic_enz NAD(P) binding domain of mali | 96.28 | |
| PRK14874 | 334 | aspartate-semialdehyde dehydrogenase; Provisional | 96.28 | |
| PRK11559 | 296 | garR tartronate semialdehyde reductase; Provisiona | 96.19 | |
| PRK06732 | 229 | phosphopantothenate--cysteine ligase; Validated | 96.19 | |
| PRK12491 | 272 | pyrroline-5-carboxylate reductase; Reviewed | 96.19 | |
| KOG2666 | 481 | consensus UDP-glucose/GDP-mannose dehydrogenase [C | 96.19 | |
| PF01113 | 124 | DapB_N: Dihydrodipicolinate reductase, N-terminus; | 96.17 | |
| PRK11199 | 374 | tyrA bifunctional chorismate mutase/prephenate deh | 96.14 | |
| cd01065 | 155 | NAD_bind_Shikimate_DH NAD(P) binding domain of Shi | 96.06 | |
| PRK13302 | 271 | putative L-aspartate dehydrogenase; Provisional | 96.03 | |
| PRK12490 | 299 | 6-phosphogluconate dehydrogenase-like protein; Rev | 96.01 | |
| PF02882 | 160 | THF_DHG_CYH_C: Tetrahydrofolate dehydrogenase/cycl | 95.99 | |
| TIGR01505 | 291 | tartro_sem_red 2-hydroxy-3-oxopropionate reductase | 95.98 | |
| KOG0725 | 270 | consensus Reductases with broad range of substrate | 95.97 | |
| PF02826 | 178 | 2-Hacid_dh_C: D-isomer specific 2-hydroxyacid dehy | 95.9 | |
| KOG2711 | 372 | consensus Glycerol-3-phosphate dehydrogenase/dihyd | 95.89 | |
| TIGR02813 | 2582 | omega_3_PfaA polyketide-type polyunsaturated fatty | 95.89 | |
| PLN02383 | 344 | aspartate semialdehyde dehydrogenase | 95.84 | |
| KOG1014 | 312 | consensus 17 beta-hydroxysteroid dehydrogenase typ | 95.8 | |
| PRK06598 | 369 | aspartate-semialdehyde dehydrogenase; Reviewed | 95.77 | |
| PRK09599 | 301 | 6-phosphogluconate dehydrogenase-like protein; Rev | 95.75 | |
| KOG4039 | 238 | consensus Serine/threonine kinase TIP30/CC3 [Signa | 95.73 | |
| PRK08664 | 349 | aspartate-semialdehyde dehydrogenase; Reviewed | 95.68 | |
| TIGR02371 | 325 | ala_DH_arch alanine dehydrogenase, Archaeoglobus f | 95.66 | |
| PRK00048 | 257 | dihydrodipicolinate reductase; Provisional | 95.65 | |
| cd00762 | 254 | NAD_bind_malic_enz NAD(P) binding domain of malic | 95.64 | |
| PRK14106 | 450 | murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn | 95.61 | |
| PRK15059 | 292 | tartronate semialdehyde reductase; Provisional | 95.61 | |
| PLN02712 | 667 | arogenate dehydrogenase | 95.59 | |
| COG0002 | 349 | ArgC Acetylglutamate semialdehyde dehydrogenase [A | 95.57 | |
| PRK08818 | 370 | prephenate dehydrogenase; Provisional | 95.56 | |
| PRK03659 | 601 | glutathione-regulated potassium-efflux system prot | 95.56 | |
| COG0287 | 279 | TyrA Prephenate dehydrogenase [Amino acid transpor | 95.56 | |
| PF03949 | 255 | Malic_M: Malic enzyme, NAD binding domain; InterPr | 95.55 | |
| PRK06476 | 258 | pyrroline-5-carboxylate reductase; Reviewed | 95.54 | |
| PRK06407 | 301 | ornithine cyclodeaminase; Provisional | 95.51 | |
| PRK08618 | 325 | ornithine cyclodeaminase; Validated | 95.48 | |
| PRK07688 | 339 | thiamine/molybdopterin biosynthesis ThiF/MoeB-like | 95.48 | |
| COG2084 | 286 | MmsB 3-hydroxyisobutyrate dehydrogenase and relate | 95.45 | |
| cd05213 | 311 | NAD_bind_Glutamyl_tRNA_reduct NADP-binding domain | 95.45 | |
| PRK08291 | 330 | ectoine utilization protein EutC; Validated | 95.45 | |
| PRK00436 | 343 | argC N-acetyl-gamma-glutamyl-phosphate reductase; | 95.42 | |
| cd01487 | 174 | E1_ThiF_like E1_ThiF_like. Member of superfamily o | 95.41 | |
| PRK05579 | 399 | bifunctional phosphopantothenoylcysteine decarboxy | 95.4 | |
| TIGR02354 | 200 | thiF_fam2 thiamine biosynthesis protein ThiF, fami | 95.4 | |
| PRK14194 | 301 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 95.4 | |
| PRK14192 | 283 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 95.36 | |
| cd01080 | 168 | NAD_bind_m-THF_DH_Cyclohyd NADP binding domain of | 95.34 | |
| PF02423 | 313 | OCD_Mu_crystall: Ornithine cyclodeaminase/mu-cryst | 95.33 | |
| cd05212 | 140 | NAD_bind_m-THF_DH_Cyclohyd_like NAD(P) binding dom | 95.33 | |
| TIGR02992 | 326 | ectoine_eutC ectoine utilization protein EutC. Mem | 95.32 | |
| PLN02256 | 304 | arogenate dehydrogenase | 95.31 | |
| TIGR01850 | 346 | argC N-acetyl-gamma-glutamyl-phosphate reductase, | 95.29 | |
| PRK05479 | 330 | ketol-acid reductoisomerase; Provisional | 95.27 | |
| PRK07340 | 304 | ornithine cyclodeaminase; Validated | 95.26 | |
| PRK06545 | 359 | prephenate dehydrogenase; Validated | 95.23 | |
| PRK08040 | 336 | putative semialdehyde dehydrogenase; Provisional | 95.22 | |
| PRK06300 | 299 | enoyl-(acyl carrier protein) reductase; Provisiona | 95.21 | |
| TIGR02356 | 202 | adenyl_thiF thiazole biosynthesis adenylyltransfer | 95.19 | |
| PRK14175 | 286 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 95.18 | |
| PLN02350 | 493 | phosphogluconate dehydrogenase (decarboxylating) | 95.18 | |
| PRK12475 | 338 | thiamine/molybdopterin biosynthesis MoeB-like prot | 95.17 | |
| COG0345 | 266 | ProC Pyrroline-5-carboxylate reductase [Amino acid | 95.11 | |
| PTZ00431 | 260 | pyrroline carboxylate reductase; Provisional | 95.08 | |
| PF02254 | 116 | TrkA_N: TrkA-N domain; InterPro: IPR003148 The reg | 95.03 | |
| PRK13304 | 265 | L-aspartate dehydrogenase; Reviewed | 95.02 | |
| PRK15438 | 378 | erythronate-4-phosphate dehydrogenase PdxB; Provis | 95.01 | |
| COG1712 | 255 | Predicted dinucleotide-utilizing enzyme [General f | 94.96 | |
| PRK06141 | 314 | ornithine cyclodeaminase; Validated | 94.95 | |
| PRK07589 | 346 | ornithine cyclodeaminase; Validated | 94.95 | |
| KOG1207 | 245 | consensus Diacetyl reductase/L-xylulose reductase | 94.86 | |
| PRK06823 | 315 | ornithine cyclodeaminase; Validated | 94.82 | |
| TIGR01035 | 417 | hemA glutamyl-tRNA reductase. This enzyme, togethe | 94.8 | |
| PRK00257 | 381 | erythronate-4-phosphate dehydrogenase; Validated | 94.77 | |
| cd01075 | 200 | NAD_bind_Leu_Phe_Val_DH NAD(P) binding domain of l | 94.77 | |
| PF00670 | 162 | AdoHcyase_NAD: S-adenosyl-L-homocysteine hydrolase | 94.74 | |
| TIGR00465 | 314 | ilvC ketol-acid reductoisomerase. This is the seco | 94.73 | |
| PLN02819 | 1042 | lysine-ketoglutarate reductase/saccharopine dehydr | 94.73 | |
| PRK00258 | 278 | aroE shikimate 5-dehydrogenase; Reviewed | 94.73 | |
| PRK13940 | 414 | glutamyl-tRNA reductase; Provisional | 94.72 | |
| PRK07574 | 385 | formate dehydrogenase; Provisional | 94.68 | |
| TIGR01296 | 339 | asd_B aspartate-semialdehyde dehydrogenase (peptid | 94.67 | |
| KOG1203 | 411 | consensus Predicted dehydrogenase [Carbohydrate tr | 94.67 | |
| PRK08605 | 332 | D-lactate dehydrogenase; Validated | 94.62 | |
| PRK14189 | 285 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 94.57 | |
| COG0289 | 266 | DapB Dihydrodipicolinate reductase [Amino acid tra | 94.57 | |
| PRK13243 | 333 | glyoxylate reductase; Reviewed | 94.55 | |
| TIGR01724 | 341 | hmd_rel H2-forming N(5),N(10)-methenyltetrahydrome | 94.48 | |
| PRK14179 | 284 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 94.47 | |
| PRK14173 | 287 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 94.46 | |
| PF00899 | 135 | ThiF: ThiF family; InterPro: IPR000594 Ubiquitin-a | 94.45 | |
| PRK03562 | 621 | glutathione-regulated potassium-efflux system prot | 94.43 | |
| PRK00045 | 423 | hemA glutamyl-tRNA reductase; Reviewed | 94.43 | |
| PRK14188 | 296 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 94.39 | |
| PLN03129 | 581 | NADP-dependent malic enzyme; Provisional | 94.38 | |
| PRK13656 | 398 | trans-2-enoyl-CoA reductase; Provisional | 94.34 | |
| COG0136 | 334 | Asd Aspartate-semialdehyde dehydrogenase [Amino ac | 94.34 | |
| cd01079 | 197 | NAD_bind_m-THF_DH NAD binding domain of methylene- | 94.34 | |
| PF07991 | 165 | IlvN: Acetohydroxy acid isomeroreductase, catalyti | 94.33 | |
| KOG0409 | 327 | consensus Predicted dehydrogenase [General functio | 94.33 | |
| PRK08306 | 296 | dipicolinate synthase subunit A; Reviewed | 94.3 | |
| PRK15469 | 312 | ghrA bifunctional glyoxylate/hydroxypyruvate reduc | 94.3 | |
| TIGR00978 | 341 | asd_EA aspartate-semialdehyde dehydrogenase (non-p | 94.26 |
| >PRK05442 malate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-68 Score=491.42 Aligned_cols=325 Identities=61% Similarity=0.953 Sum_probs=293.0
Q ss_pred CCCcEEEEEcCCChhHHHHHHHHHhcccCCCCCCeEEEEEecccchhhhhhhHhhhhhhccCCccceEEeCCHHHHhCCC
Q 019990 3 KNPLRVLVTGAAGQIGYALVPMIARGIMLGPDQPVILHMLDIEPAAEALNGVKMELIDAAFPLLKGVVATTDVVEACKDV 82 (332)
Q Consensus 3 ~~~~kI~VtGaaG~IGs~l~~~L~~~~~~~~~~~~~i~l~D~~~~~~~~~~~~~dl~~~~~~~~~~v~~~~~~~~a~~~a 82 (332)
++|+||+|+||+|+||+++++.|...++++.+.+.+++|+|++++.+++.|.++||.|+..+...++..+.+.+++++||
T Consensus 2 ~~~~KV~IiGaaG~VG~~~a~~l~~~~~~~~~~~~el~LiDi~~~~~~~~g~a~Dl~~~~~~~~~~~~i~~~~y~~~~da 81 (326)
T PRK05442 2 KAPVRVAVTGAAGQIGYSLLFRIASGDMLGKDQPVILQLLEIPPALKALEGVVMELDDCAFPLLAGVVITDDPNVAFKDA 81 (326)
T ss_pred CCCcEEEEECCCcHHHHHHHHHHHhhhhcCCCCccEEEEEecCCcccccceeehhhhhhhhhhcCCcEEecChHHHhCCC
Confidence 67889999997799999999999998887655556999999976556789999999998755544566667778999999
Q ss_pred cEEEEecCCCCCCCCChhHHHhhhHHHHHHHHHHHHhhcCCCcEEEEEeCChhhHHHHHHHHCCCCCCCcEEEeecccHH
Q 019990 83 NIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEKHAAPNCKVLVVANPANTNALILKEFAPSIPAKNITCLTRLDHN 162 (332)
Q Consensus 83 DiVi~~ag~~~~~~~~~~~~~~~N~~~~~~i~~~i~~~~~~~~~viv~snp~~~~~~~~~~~~~~~~~~~i~~~t~l~~~ 162 (332)
|+||++||.+++++++|.+++..|+++++++++.+.++++|+++++++|||+|++++++++.++++|++|++|.|.||+.
T Consensus 82 DiVVitaG~~~k~g~tR~dll~~Na~i~~~i~~~i~~~~~~~~iiivvsNPvDv~t~v~~k~s~g~p~~rViG~t~LDs~ 161 (326)
T PRK05442 82 DVALLVGARPRGPGMERKDLLEANGAIFTAQGKALNEVAARDVKVLVVGNPANTNALIAMKNAPDLPAENFTAMTRLDHN 161 (326)
T ss_pred CEEEEeCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHHhCCCCeEEEEeCCchHHHHHHHHHHcCCCCHHHEEeeeHHHHH
Confidence 99999999999999999999999999999999999998767999999999999999999998339999998777999999
Q ss_pred HHHHHHHHHcCCCCCCeeeeEEEecCCCceeecccCcccccCCCCcchhhhccccccchhHHHHHHHhhHHHHHHhcCCc
Q 019990 163 RAMGQISERLKVHVSDVKNVIIWGNHSSTQYPDVNHATVTTSKGEKPVREAVADDNWLNTEFITTVQQRGAAIIKARKLS 242 (332)
Q Consensus 163 r~~~~~a~~~~v~~~~v~~~~V~G~hg~~~v~~~s~~~v~~~~~~~p~~~~~~~~~~~~~~~~~~v~~~~~~i~~~~g~~ 242 (332)
|+++++|+++++++++|++++||||||++++|+||++++ +|+|+.+++.+++|..+++.+++++++++|++.||+|
T Consensus 162 R~r~~la~~l~v~~~~V~~~vV~GeHG~s~~~~~S~~~v----~g~pl~~~~~~~~~~~~~i~~~v~~~g~~Ii~~kG~t 237 (326)
T PRK05442 162 RALSQLAAKAGVPVADIKKMTVWGNHSATQYPDFRHATI----DGKPAAEVINDQAWLEDTFIPTVQKRGAAIIEARGAS 237 (326)
T ss_pred HHHHHHHHHhCcChHHeEEeEEEECCcCceeeccccCEE----CCEEHHHHccchhhHHHHHHHHHHhhHHHHHhCcCCc
Confidence 999999999999999999987899999999999999999 9999999987767777899999999999999999999
Q ss_pred chHHHHHHHHHHHHHHHcCCCCCcEEEEEEeecCCCCCCCCeEEEEeEEEeCCeEEEecCCCCCHHHHHHHHHHHHHHHH
Q 019990 243 SALSAASSACDHIRDWVLGTPKGTWVSMGVYSDGSYGIPEGLIYSFPVTCEKGEWSIVKGLKVDEFSRAKMDATAEELAE 322 (332)
Q Consensus 243 ~~~~~a~a~~~~i~~~~~~~~~~~i~~~~v~~~g~yg~~~~~~~s~Pv~~~~G~~~~~~~~~l~~~E~~~l~~s~~~i~~ 322 (332)
+|.++++++++++.+++.++++++|+|+|++++|+||+|+++|||+||++|+|+++++++++|+++|+++|++|++.|++
T Consensus 238 ~~~~a~~~~~~iv~ail~~~~~~~i~~~sv~~~g~ygi~~~v~~s~P~~ig~Gv~~iv~~l~L~~~E~~~l~~s~~~l~~ 317 (326)
T PRK05442 238 SAASAANAAIDHVRDWVLGTPEGDWVSMGVPSDGSYGIPEGLIFGFPVTCENGEYEIVQGLEIDDFSREKIDATLAELEE 317 (326)
T ss_pred cHHHHHHHHHHHHHHHHhCCCCCeEEEEEEEecCccCCcCCeEEEEEEEEcCcEEEEeCCCCCCHHHHHHHHHHHHHHHH
Confidence 98765554688888888753268999999999999999889999999999999999976799999999999999999999
Q ss_pred HHHHHhhhh
Q 019990 323 EKTLAYSCL 331 (332)
Q Consensus 323 ~~~~~~~~~ 331 (332)
+.+.+...|
T Consensus 318 ~~~~~~~~~ 326 (326)
T PRK05442 318 ERDAVKHLL 326 (326)
T ss_pred HHHHHHhhC
Confidence 999886654
|
|
| >TIGR01759 MalateDH-SF1 malate dehydrogenase | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-68 Score=490.89 Aligned_cols=320 Identities=65% Similarity=1.013 Sum_probs=290.2
Q ss_pred CCCcEEEEEcCCChhHHHHHHHHHhcccCCCCCCeEEEEEecccchhhhhhhHhhhhhhccCCccceEEeCCHHHHhCCC
Q 019990 3 KNPLRVLVTGAAGQIGYALVPMIARGIMLGPDQPVILHMLDIEPAAEALNGVKMELIDAAFPLLKGVVATTDVVEACKDV 82 (332)
Q Consensus 3 ~~~~kI~VtGaaG~IGs~l~~~L~~~~~~~~~~~~~i~l~D~~~~~~~~~~~~~dl~~~~~~~~~~v~~~~~~~~a~~~a 82 (332)
++|.||+|+||+|+||+++++.|+.+++++.+...+++|+|++++.+++.|.++|+.|+..+...++....+.+++++||
T Consensus 1 ~~p~KV~IIGa~G~VG~~~a~~l~~~~~~~~~~~~el~L~Di~~~~~~a~g~a~Dl~~~~~~~~~~~~i~~~~~~~~~da 80 (323)
T TIGR01759 1 KKPVRVAVTGAAGQIGYSLLFRIASGELFGKDQPVVLHLLDIPPAMKALEGVAMELEDCAFPLLAGVVATTDPEEAFKDV 80 (323)
T ss_pred CCCeEEEEECCCcHHHHHHHHHHHhCCcccCCCccEEEEEecCCcccccchHHHHHhhccccccCCcEEecChHHHhCCC
Confidence 47899999997799999999999998887655556999999976545689999999998755555556666778999999
Q ss_pred cEEEEecCCCCCCCCChhHHHhhhHHHHHHHHHHHHhhcCCCcEEEEEeCChhhHHHHHHHHCC-CCCCCcEEEeecccH
Q 019990 83 NIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEKHAAPNCKVLVVANPANTNALILKEFAP-SIPAKNITCLTRLDH 161 (332)
Q Consensus 83 DiVi~~ag~~~~~~~~~~~~~~~N~~~~~~i~~~i~~~~~~~~~viv~snp~~~~~~~~~~~~~-~~~~~~i~~~t~l~~ 161 (332)
|+||++||.+++++++|.+++..|+++++++++.++++++|+++++++|||+|+|+++++++ + ++|++|++|+|.||+
T Consensus 81 DvVVitAG~~~k~g~tR~dll~~Na~i~~~i~~~i~~~~~~~~iiivvsNPvDv~t~v~~k~-s~g~p~~rViG~t~LDs 159 (323)
T TIGR01759 81 DAALLVGAFPRKPGMERADLLSKNGKIFKEQGKALNKVAKKDVKVLVVGNPANTNALIASKN-APDIPPKNFSAMTRLDH 159 (323)
T ss_pred CEEEEeCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHhhCCCCeEEEEeCCcHHHHHHHHHHH-cCCCCHHHEEEeeHHHH
Confidence 99999999999999999999999999999999999999833999999999999999999998 6 999999877899999
Q ss_pred HHHHHHHHHHcCCCCCCeeeeEEEecCCCceeecccCcccccCCCCcchhhhccccccchhHHHHHHHhhHHHHHHhcCC
Q 019990 162 NRAMGQISERLKVHVSDVKNVIIWGNHSSTQYPDVNHATVTTSKGEKPVREAVADDNWLNTEFITTVQQRGAAIIKARKL 241 (332)
Q Consensus 162 ~r~~~~~a~~~~v~~~~v~~~~V~G~hg~~~v~~~s~~~v~~~~~~~p~~~~~~~~~~~~~~~~~~v~~~~~~i~~~~g~ 241 (332)
.|+++++|+++|++|++|+.++||||||++++|+||++++ +|+|+.+++.++.|+.+++.+++++++++|++.||+
T Consensus 160 ~R~r~~la~~l~v~~~~V~~~~V~GeHG~s~v~~~S~~~v----~g~pl~~~~~~~~~~~~~i~~~v~~~g~~Ii~~kG~ 235 (323)
T TIGR01759 160 NRAKYQLAAKAGVPVSDVKNVIIWGNHSNTQVPDFTHATV----DGRPVKEVIKDDKWLEGEFIPTVQQRGAAVIEARGA 235 (323)
T ss_pred HHHHHHHHHHhCcChHHeEEeEEEecCCCceeeccccCEE----CCccHHHHhcchhhHHHHHHHHHHhhHHHHHhccCC
Confidence 9999999999999999997777899999999999999999 999999998776676789999999999999999999
Q ss_pred cchHHHHHHHHHHHHHHHcCCCCCcEEEEEEeecC-CCCCCCCeEEEEeEEEe-CCeEEEecCCCCCHHHHHHHHHHHHH
Q 019990 242 SSALSAASSACDHIRDWVLGTPKGTWVSMGVYSDG-SYGIPEGLIYSFPVTCE-KGEWSIVKGLKVDEFSRAKMDATAEE 319 (332)
Q Consensus 242 ~~~~~~a~a~~~~i~~~~~~~~~~~i~~~~v~~~g-~yg~~~~~~~s~Pv~~~-~G~~~~~~~~~l~~~E~~~l~~s~~~ 319 (332)
|+|+++|+++++++.+++.+.++++++|+|++++| +||+|+++|||+||++| +|+++++++++|+++|+++|++|++.
T Consensus 236 t~~~~~a~a~~~iv~ail~~~~~~~v~~~s~~~~g~~Yg~~~~v~~s~P~~lg~~Gv~~iv~~l~L~~~E~~~l~~sa~~ 315 (323)
T TIGR01759 236 SSAASAANAAIDHVRDWVTGTPEGDWVSMGVYSDGNPYGIPEGIIFSFPVTCKGDGEWEIVEGLPLDDFVRGKLDATEDE 315 (323)
T ss_pred cchHHHHHHHHHHHHHHHcCCCCCcEEEEEEEeCCcccCCCCCeEEEEEEEEcCCeeEEEcCCCCCCHHHHHHHHHHHHH
Confidence 99888889999988888775323889999999999 99998899999999999 99999996699999999999999999
Q ss_pred HHHHHHHH
Q 019990 320 LAEEKTLA 327 (332)
Q Consensus 320 i~~~~~~~ 327 (332)
|+++++++
T Consensus 316 lk~~~~~~ 323 (323)
T TIGR01759 316 LLEEKEEA 323 (323)
T ss_pred HHHHHhcC
Confidence 99998763
|
This model represents a family of malate dehydrogenases in bacteria and eukaryotes which utilize either NAD or NADP depending on the species and context. MDH interconverts malate and oxaloacetate and is a part of the citric acid cycle as well as the C4 cycle in certain photosynthetic organisms. |
| >TIGR01757 Malate-DH_plant malate dehydrogenase, NADP-dependent | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.4e-67 Score=486.45 Aligned_cols=324 Identities=43% Similarity=0.700 Sum_probs=293.1
Q ss_pred CCCcEEEEEcCCChhHHHHHHHHHhcccCCCCCCeEEEEEecccchhhhhhhHhhhhhhccCCccceEEeCCHHHHhCCC
Q 019990 3 KNPLRVLVTGAAGQIGYALVPMIARGIMLGPDQPVILHMLDIEPAAEALNGVKMELIDAAFPLLKGVVATTDVVEACKDV 82 (332)
Q Consensus 3 ~~~~kI~VtGaaG~IGs~l~~~L~~~~~~~~~~~~~i~l~D~~~~~~~~~~~~~dl~~~~~~~~~~v~~~~~~~~a~~~a 82 (332)
+++.||+||||+|+||+++++.|+.+++++.+.+..++|+|++.+.++++|.++||.|+.+++..++....+.+++++||
T Consensus 42 ~~p~KV~IIGAaG~VG~~~A~~l~~~~l~~~~~ei~L~L~diD~~~~~a~g~a~DL~d~a~~~~~~v~i~~~~y~~~kda 121 (387)
T TIGR01757 42 KKTVNVAVSGAAGMISNHLLFMLASGEVFGQDQPIALKLLGSERSKEALEGVAMELEDSLYPLLREVSIGIDPYEVFEDA 121 (387)
T ss_pred CCCeEEEEECCCcHHHHHHHHHHHhccccCCCCceEEEEeccCccchhhhHHHHHHHHhhhhhcCceEEecCCHHHhCCC
Confidence 35789999997799999999999999988755556788886555567899999999998765555666566678999999
Q ss_pred cEEEEecCCCCCCCCChhHHHhhhHHHHHHHHHHHHhhcCCCcEEEEEeCChhhHHHHHHHHCCCCCCCc-EEEeecccH
Q 019990 83 NIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEKHAAPNCKVLVVANPANTNALILKEFAPSIPAKN-ITCLTRLDH 161 (332)
Q Consensus 83 DiVi~~ag~~~~~~~~~~~~~~~N~~~~~~i~~~i~~~~~~~~~viv~snp~~~~~~~~~~~~~~~~~~~-i~~~t~l~~ 161 (332)
|+||++||.|++++++|.+++..|+++++++++.+.++++|++++|++|||+|++++++++. ++++|++ |+++|.||+
T Consensus 122 DIVVitAG~prkpg~tR~dll~~N~~I~k~i~~~I~~~a~~~~iviVVsNPvDv~t~v~~k~-sg~~~~rviG~gT~LDs 200 (387)
T TIGR01757 122 DWALLIGAKPRGPGMERADLLDINGQIFADQGKALNAVASKNCKVLVVGNPCNTNALIAMKN-APNIPRKNFHALTRLDE 200 (387)
T ss_pred CEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCCeEEEEcCCcHHHHHHHHHHH-cCCCcccEEEecchhHH
Confidence 99999999999999999999999999999999999998768999999999999999999998 6777776 789999999
Q ss_pred HHHHHHHHHHcCCCCCCeeeeEEEecCCCceeecccCcccccCCCCcchhhhccccccchhHHHHHHHhhHHHHHHhcCC
Q 019990 162 NRAMGQISERLKVHVSDVKNVIIWGNHSSTQYPDVNHATVTTSKGEKPVREAVADDNWLNTEFITTVQQRGAAIIKARKL 241 (332)
Q Consensus 162 ~r~~~~~a~~~~v~~~~v~~~~V~G~hg~~~v~~~s~~~v~~~~~~~p~~~~~~~~~~~~~~~~~~v~~~~~~i~~~~g~ 241 (332)
.|+++++|+++++++++|+..+||||||++++|+||++++ +|+|+.+++.++.|.+++|.+.+++++++|++.||+
T Consensus 201 aR~r~~LA~~l~v~~~~V~~~~V~GeHGds~vp~~S~a~V----~G~pl~~~~~~~~~~~~ei~~~v~~~g~eIi~~KG~ 276 (387)
T TIGR01757 201 NRAKCQLALKSGKFYTSVSNVTIWGNHSTTQVPDFVNAKI----GGRPAKEVIKDTKWLEEEFTPTVQKRGGALIKKWGR 276 (387)
T ss_pred HHHHHHHHHHHCcChhHcceeEEEecCCCcEEecceeeEE----CCEEhHHhcccccchHHHHHHHHHHHHHHHHhccCc
Confidence 9999999999999999996445799999999999999999 999999998776787889999999999999999999
Q ss_pred cchHHHHHHHHHHHHHHHcCCCCCcEEEEEEeecCC-CCCCCCeEEEEeEEEe-CCeEEEecCCCCCHHHHHHHHHHHHH
Q 019990 242 SSALSAASSACDHIRDWVLGTPKGTWVSMGVYSDGS-YGIPEGLIYSFPVTCE-KGEWSIVKGLKVDEFSRAKMDATAEE 319 (332)
Q Consensus 242 ~~~~~~a~a~~~~i~~~~~~~~~~~i~~~~v~~~g~-yg~~~~~~~s~Pv~~~-~G~~~~~~~~~l~~~E~~~l~~s~~~ 319 (332)
|+++++|.++++++.+|+.|.|+++|+|+|++++|+ ||+++|+|||+||+++ +|+|+++.+++|+++|+++|++|++.
T Consensus 277 t~~~s~a~ai~~~i~ai~~g~d~~~il~vsv~~~Ge~YGi~~gv~~S~Pvvig~~Gv~~Iv~~l~L~~~E~~~l~~Sa~~ 356 (387)
T TIGR01757 277 SSAASTAVSIADAIKSLVVPTPEGDWFSTGVYTDGNPYGIAEGLVFSMPCRSKGDGDYELATDVSMDDFLRERIRKSEDE 356 (387)
T ss_pred hhHHHHHHHHHHHHHHHhcCCCCCeEEEEEEEeCCcccCCCCCEEEEEEEEEeCCEEEEECCCCCCCHHHHHHHHHHHHH
Confidence 988888999999999999777789999999999997 9988899999999999 99999963599999999999999999
Q ss_pred HHHHHHHHhhhh
Q 019990 320 LAEEKTLAYSCL 331 (332)
Q Consensus 320 i~~~~~~~~~~~ 331 (332)
|+++.+.+...+
T Consensus 357 L~~e~~~~~~~~ 368 (387)
T TIGR01757 357 LLKEKECVAHLI 368 (387)
T ss_pred HHHHHHHHHHhh
Confidence 999999887655
|
This model represents the NADP-dependent malate dehydrogenase found in plants, mosses and green algae and localized to the chloroplast. Malate dehydrogenase converts oxaloacetate into malate, a critical step in the C4 cycle which allows circumvention of the effects of photorespiration. Malate is subsequenctly transported from the chloroplast to the cytoplasm (and then to the bundle sheath cells in C4 plants). The plant and moss enzymes are light regulated via cysteine disulfide bonds. The enzyme from Sorghum has been crystallized. |
| >COG0039 Mdh Malate/lactate dehydrogenases [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.7e-67 Score=471.48 Aligned_cols=307 Identities=32% Similarity=0.455 Sum_probs=280.3
Q ss_pred cEEEEEcCCChhHHHHHHHHHhcccCCCCCCeEEEEEecccchhhhhhhHhhhhhhccCCccceEEeC-CHHHHhCCCcE
Q 019990 6 LRVLVTGAAGQIGYALVPMIARGIMLGPDQPVILHMLDIEPAAEALNGVKMELIDAAFPLLKGVVATT-DVVEACKDVNI 84 (332)
Q Consensus 6 ~kI~VtGaaG~IGs~l~~~L~~~~~~~~~~~~~i~l~D~~~~~~~~~~~~~dl~~~~~~~~~~v~~~~-~~~~a~~~aDi 84 (332)
+||+|+|| |+||+++++.|+.+++.. +++|+|+. ++.++|.++||.|+..+...+..... ..+++|+++|+
T Consensus 1 ~KVaviGa-G~VG~s~a~~l~~~~~~~-----el~LiDi~--~~~~~G~a~DL~~~~~~~~~~~~i~~~~~y~~~~~aDi 72 (313)
T COG0039 1 MKVAVIGA-GNVGSSLAFLLLLQGLGS-----ELVLIDIN--EEKAEGVALDLSHAAAPLGSDVKITGDGDYEDLKGADI 72 (313)
T ss_pred CeEEEECC-ChHHHHHHHHHhcccccc-----eEEEEEcc--cccccchhcchhhcchhccCceEEecCCChhhhcCCCE
Confidence 58999996 999999999997776643 99999997 36789999999998766554444443 33788999999
Q ss_pred EEEecCCCCCCCCChhHHHhhhHHHHHHHHHHHHhhcCCCcEEEEEeCChhhHHHHHHHHCCCCCCCc-EEEeecccHHH
Q 019990 85 AVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEKHAAPNCKVLVVANPANTNALILKEFAPSIPAKN-ITCLTRLDHNR 163 (332)
Q Consensus 85 Vi~~ag~~~~~~~~~~~~~~~N~~~~~~i~~~i~~~~~~~~~viv~snp~~~~~~~~~~~~~~~~~~~-i~~~t~l~~~r 163 (332)
|+++||.||+||++|.|++..|+.+++++++++.+++ |+++++++|||+|+++|+++++ +++|+++ |+++|.||+.|
T Consensus 73 VvitAG~prKpGmtR~DLl~~Na~I~~~i~~~i~~~~-~d~ivlVvtNPvD~~ty~~~k~-sg~p~~rvig~gt~LDsaR 150 (313)
T COG0039 73 VVITAGVPRKPGMTRLDLLEKNAKIVKDIAKAIAKYA-PDAIVLVVTNPVDILTYIAMKF-SGFPKNRVIGSGTVLDSAR 150 (313)
T ss_pred EEEeCCCCCCCCCCHHHHHHhhHHHHHHHHHHHHhhC-CCeEEEEecCcHHHHHHHHHHh-cCCCccceecccchHHHHH
Confidence 9999999999999999999999999999999999998 8999999999999999999998 8899988 88999999999
Q ss_pred HHHHHHHHcCCCCCCeeeeEEEecCCCceeecccCcccccCCCCcchhhhcc-ccccchhHHHHHHHhhHHHHHHhcCCc
Q 019990 164 AMGQISERLKVHVSDVKNVIIWGNHSSTQYPDVNHATVTTSKGEKPVREAVA-DDNWLNTEFITTVQQRGAAIIKARKLS 242 (332)
Q Consensus 164 ~~~~~a~~~~v~~~~v~~~~V~G~hg~~~v~~~s~~~v~~~~~~~p~~~~~~-~~~~~~~~~~~~v~~~~~~i~~~~g~~ 242 (332)
|++++|+++|+++++|+.+ |+|+||+++||+||++++ +|+|+.++++ .+.|+.+++.+++|+++++|++.||..
T Consensus 151 ~~~~lae~~~v~~~~V~~~-ViGeHGdt~vp~~S~a~v----~G~pl~~~~~~~~~~~~~~i~~~v~~~g~eII~~kG~~ 225 (313)
T COG0039 151 FRTFLAEKLGVSPKDVHAY-VIGEHGDTMVPLWSQATV----GGKPLEELLKEDTEEDLEELIERVRNAGAEIIEAKGAG 225 (313)
T ss_pred HHHHHHHHhCCChhHceee-EeccCCCceEEeeeeeeE----CCEEHHHHhhcccHhHHHHHHHHHHhhHHHHHHccCcc
Confidence 9999999999999999997 579999999999999999 9999999998 567888999999999999999999765
Q ss_pred chHHHHHHHHHHHHHHHcCCCCCcEEEEEEeecCCCCCCCCeEEEEeEEEe-CCeEEEecCCCCCHHHHHHHHHHHHHHH
Q 019990 243 SALSAASSACDHIRDWVLGTPKGTWVSMGVYSDGSYGIPEGLIYSFPVTCE-KGEWSIVKGLKVDEFSRAKMDATAEELA 321 (332)
Q Consensus 243 ~~~~~a~a~~~~i~~~~~~~~~~~i~~~~v~~~g~yg~~~~~~~s~Pv~~~-~G~~~~~~~~~l~~~E~~~l~~s~~~i~ 321 (332)
+++++|.+++++.++++.+ +++|+|+|++++|+||+ +++|||+|+++| +|++++++ ++|+++|+++|++|++.++
T Consensus 226 t~~~~A~a~a~~~~ail~d--~~~vl~~s~~l~G~yg~-~dv~~gvP~~lg~~Gv~~iie-~~l~~~E~~~l~~s~~~lk 301 (313)
T COG0039 226 TYYGPAAALARMVEAILRD--EKRVLPVSVYLDGEYGV-EDVYFGVPAVLGKNGVEEILE-LLLSDDEQEKLDKSAEELK 301 (313)
T ss_pred chhhHHHHHHHHHHHHHcC--CCceEEEEEeecCccCc-CCeEEEeeEEEcCCCcEEEec-CCCCHHHHHHHHHHHHHHH
Confidence 7789999999988887774 58999999999999995 899999999999 99999995 9999999999999999999
Q ss_pred HHHHHHhhhh
Q 019990 322 EEKTLAYSCL 331 (332)
Q Consensus 322 ~~~~~~~~~~ 331 (332)
+.++.+..++
T Consensus 302 ~~i~~~~~~~ 311 (313)
T COG0039 302 KNIELVKELV 311 (313)
T ss_pred HHHHHHHHhh
Confidence 9999988775
|
|
| >PLN00112 malate dehydrogenase (NADP); Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.1e-66 Score=484.67 Aligned_cols=321 Identities=42% Similarity=0.659 Sum_probs=289.9
Q ss_pred CCCcEEEEEcCCChhHHHHHHHHHhcccCCCCCCe--EEEEEecccchhhhhhhHhhhhhhccCCccceEEeCCHHHHhC
Q 019990 3 KNPLRVLVTGAAGQIGYALVPMIARGIMLGPDQPV--ILHMLDIEPAAEALNGVKMELIDAAFPLLKGVVATTDVVEACK 80 (332)
Q Consensus 3 ~~~~kI~VtGaaG~IGs~l~~~L~~~~~~~~~~~~--~i~l~D~~~~~~~~~~~~~dl~~~~~~~~~~v~~~~~~~~a~~ 80 (332)
+++.||+||||+|+||+++++.|+.+++++.+... +++++|++. ++++|.++||.|..+++..++....+.+++++
T Consensus 98 ~~~~KV~IIGAaG~VG~~~A~~L~~~~v~g~~~~i~~eLvliD~~~--~~a~G~amDL~daa~~~~~~v~i~~~~ye~~k 175 (444)
T PLN00112 98 KKLINVAVSGAAGMISNHLLFKLASGEVFGPDQPIALKLLGSERSK--QALEGVAMELEDSLYPLLREVSIGIDPYEVFQ 175 (444)
T ss_pred CCCeEEEEECCCcHHHHHHHHHHHhcccccCCCCcccEEEEEcCCc--chhHHHHHHHHHhhhhhcCceEEecCCHHHhC
Confidence 35789999998799999999999998666544322 899999864 68999999999987665556765666789999
Q ss_pred CCcEEEEecCCCCCCCCChhHHHhhhHHHHHHHHHHHHh-hcCCCcEEEEEeCChhhHHHHHHHHCCCCCCCc-EEEeec
Q 019990 81 DVNIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEK-HAAPNCKVLVVANPANTNALILKEFAPSIPAKN-ITCLTR 158 (332)
Q Consensus 81 ~aDiVi~~ag~~~~~~~~~~~~~~~N~~~~~~i~~~i~~-~~~~~~~viv~snp~~~~~~~~~~~~~~~~~~~-i~~~t~ 158 (332)
|||+||++||.|+++|++|.+++..|+++++++++.+.+ ++ |++++|++|||+|+|++++++. +++++++ |+++|.
T Consensus 176 daDiVVitAG~prkpG~tR~dLl~~N~~I~k~i~~~I~~~a~-p~~ivIVVsNPvDv~t~v~~k~-sg~~~~rViGtgT~ 253 (444)
T PLN00112 176 DAEWALLIGAKPRGPGMERADLLDINGQIFAEQGKALNEVAS-RNVKVIVVGNPCNTNALICLKN-APNIPAKNFHALTR 253 (444)
T ss_pred cCCEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhcC-CCeEEEEcCCcHHHHHHHHHHH-cCCCCcceEEeecc
Confidence 999999999999999999999999999999999999999 45 8999999999999999999998 6777766 889999
Q ss_pred ccHHHHHHHHHHHcCCCCCCeeeeEEEecCCCceeecccCcccccCCCCcchhhhccccccchhHHHHHHHhhHHHHHHh
Q 019990 159 LDHNRAMGQISERLKVHVSDVKNVIIWGNHSSTQYPDVNHATVTTSKGEKPVREAVADDNWLNTEFITTVQQRGAAIIKA 238 (332)
Q Consensus 159 l~~~r~~~~~a~~~~v~~~~v~~~~V~G~hg~~~v~~~s~~~v~~~~~~~p~~~~~~~~~~~~~~~~~~v~~~~~~i~~~ 238 (332)
||+.|+++++|+++|+++++|+..+||||||+++||+||++++ +|+|+.+++.+++|++++|.+++++++++|++.
T Consensus 254 LDsaR~r~~LA~~l~V~~~~V~~~~V~GeHGdsqvp~wS~a~V----~G~pl~e~i~~~~~~~~ei~~~v~~~g~~Ii~~ 329 (444)
T PLN00112 254 LDENRAKCQLALKAGVFYDKVSNVTIWGNHSTTQVPDFLNAKI----NGLPVKEVITDHKWLEEEFTPKVQKRGGVLIKK 329 (444)
T ss_pred HHHHHHHHHHHHHhCcCHHHcccceEEecCCCceeeccceeEE----CCccHHHhhccccchHHHHHHHHHHHHHHHHhc
Confidence 9999999999999999999997756799999999999999999 999999998887788899999999999999999
Q ss_pred cCCcchHHHHHHHHHHHHHHHcCCCCCcEEEEEEeecC-CCCCCCCeEEEEeEEEe-CCeEEEecCCCCCHHHHHHHHHH
Q 019990 239 RKLSSALSAASSACDHIRDWVLGTPKGTWVSMGVYSDG-SYGIPEGLIYSFPVTCE-KGEWSIVKGLKVDEFSRAKMDAT 316 (332)
Q Consensus 239 ~g~~~~~~~a~a~~~~i~~~~~~~~~~~i~~~~v~~~g-~yg~~~~~~~s~Pv~~~-~G~~~~~~~~~l~~~E~~~l~~s 316 (332)
||+++++++|.++++++.+|+.+.|+++|+|+|++++| +||+++|+|||+||++| +|+++++++++|+++|+++|++|
T Consensus 330 kG~t~~~s~a~ai~~~I~ail~~~d~~~vlpvsv~l~G~~YGi~~dv~~SvPvvig~~Gv~~Iv~el~L~~~E~~~l~~S 409 (444)
T PLN00112 330 WGRSSAASTAVSIADAIKSLVTPTPEGDWFSTGVYTDGNPYGIAEGLVFSMPCRSKGDGDYEIVKDVEIDDYLRERIKKS 409 (444)
T ss_pred cCchhHHHHHHHHHHHHHHHHcCCCCCeEEEEEEEeCCcccCCCCCeEEEeEEEEeCCeeEEECCCCCCCHHHHHHHHHH
Confidence 99888888899999999999976678999999999999 59988899999999999 99999995599999999999999
Q ss_pred HHHHHHHHHHHhhhh
Q 019990 317 AEELAEEKTLAYSCL 331 (332)
Q Consensus 317 ~~~i~~~~~~~~~~~ 331 (332)
+++|.++.+.+...+
T Consensus 410 a~~L~~e~~~~~~~~ 424 (444)
T PLN00112 410 EAELLAEKRCVAHLT 424 (444)
T ss_pred HHHHHHHHHHHHHHH
Confidence 999999888776543
|
|
| >cd01338 MDH_choloroplast_like Chloroplast-like malate dehydrogenases | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-65 Score=472.17 Aligned_cols=318 Identities=57% Similarity=0.886 Sum_probs=287.6
Q ss_pred CCcEEEEEcCCChhHHHHHHHHHhcccCCCCCCeEEEEEecccchhhhhhhHhhhhhhccCCccceEEeCCHHHHhCCCc
Q 019990 4 NPLRVLVTGAAGQIGYALVPMIARGIMLGPDQPVILHMLDIEPAAEALNGVKMELIDAAFPLLKGVVATTDVVEACKDVN 83 (332)
Q Consensus 4 ~~~kI~VtGaaG~IGs~l~~~L~~~~~~~~~~~~~i~l~D~~~~~~~~~~~~~dl~~~~~~~~~~v~~~~~~~~a~~~aD 83 (332)
+|+||+|+||+|+||+++++.|+..++++.+...+++|+|++++.+++.|.++|+.|+..++..++....+.+++++|||
T Consensus 1 ~p~KV~IiGa~G~VG~~~a~~l~~~~~~~~~~~~el~L~Di~~~~~~a~g~a~Dl~~~~~~~~~~~~i~~~~~~~~~daD 80 (322)
T cd01338 1 KPVRVAVTGAAGQIGYSLLFRIASGEMFGPDQPVILQLLELPQALKALEGVAMELEDCAFPLLAEIVITDDPNVAFKDAD 80 (322)
T ss_pred CCeEEEEECCCcHHHHHHHHHHHhccccCCCCceEEEEEecCCcccccceeehhhhhccccccCceEEecCcHHHhCCCC
Confidence 47899999977999999999999998887556679999999765566899999999987655445666667789999999
Q ss_pred EEEEecCCCCCCCCChhHHHhhhHHHHHHHHHHHHhhcCCCcEEEEEeCChhhHHHHHHHHCC-CCCCCcEEEeecccHH
Q 019990 84 IAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEKHAAPNCKVLVVANPANTNALILKEFAP-SIPAKNITCLTRLDHN 162 (332)
Q Consensus 84 iVi~~ag~~~~~~~~~~~~~~~N~~~~~~i~~~i~~~~~~~~~viv~snp~~~~~~~~~~~~~-~~~~~~i~~~t~l~~~ 162 (332)
+||++||.+++++++|.+++..|+++++++++.++++++|+++++++|||+|++++++++. + ++|+++++|.|++|++
T Consensus 81 ivvitaG~~~k~g~tR~dll~~N~~i~~~i~~~i~~~~~~~~iiivvsNPvD~~t~~~~k~-sg~~p~~~ViG~t~LDs~ 159 (322)
T cd01338 81 WALLVGAKPRGPGMERADLLKANGKIFTAQGKALNDVASRDVKVLVVGNPCNTNALIAMKN-APDIPPDNFTAMTRLDHN 159 (322)
T ss_pred EEEEeCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHhhCCCCeEEEEecCcHHHHHHHHHHH-cCCCChHheEEehHHHHH
Confidence 9999999999999999999999999999999999999844999999999999999999998 6 5999998888999999
Q ss_pred HHHHHHHHHcCCCCCCeeeeEEEecCCCceeecccCcccccCCCCcchhhhccccccchhHHHHHHHhhHHHHHHhcCCc
Q 019990 163 RAMGQISERLKVHVSDVKNVIIWGNHSSTQYPDVNHATVTTSKGEKPVREAVADDNWLNTEFITTVQQRGAAIIKARKLS 242 (332)
Q Consensus 163 r~~~~~a~~~~v~~~~v~~~~V~G~hg~~~v~~~s~~~v~~~~~~~p~~~~~~~~~~~~~~~~~~v~~~~~~i~~~~g~~ 242 (332)
|+++.+|+++|+++.+|++++|||+||++++|+||++.+ +|+|+.+++.+.+|..++|.+++++++++|++.||+|
T Consensus 160 Rl~~~la~~lgv~~~~v~~~~V~GeHG~s~vp~~S~~~v----~g~pl~~~~~~~~~~~~~i~~~v~~~g~~Ii~~kG~t 235 (322)
T cd01338 160 RAKSQLAKKAGVPVTDVKNMVIWGNHSPTQYPDFTNATI----GGKPAAEVINDRAWLEDEFIPTVQKRGAAIIKARGAS 235 (322)
T ss_pred HHHHHHHHHhCcChhHeEEEEEEeCCcccEEEehhhcEE----CCEeHHHhcChHhhHHHHHHHHHHhhHHHHHhCcCCc
Confidence 999999999999999999988899999999999999999 9999999887766778899999999999999999999
Q ss_pred chHHHHHHHHHHHHHHHcCCCCCcEEEEEEeecCCCCCCCCeEEEEeEEEe-CCeEEEecCCCCCHHHHHHHHHHHHHHH
Q 019990 243 SALSAASSACDHIRDWVLGTPKGTWVSMGVYSDGSYGIPEGLIYSFPVTCE-KGEWSIVKGLKVDEFSRAKMDATAEELA 321 (332)
Q Consensus 243 ~~~~~a~a~~~~i~~~~~~~~~~~i~~~~v~~~g~yg~~~~~~~s~Pv~~~-~G~~~~~~~~~l~~~E~~~l~~s~~~i~ 321 (332)
+|.++++++++++.+++.+.++++++|+|++++|+||+|+++|||+||++| +|+.++++ ++|+++|+++|++|++.|+
T Consensus 236 ~~~~~a~a~~~iv~ail~~~~~~~i~~~sv~~~g~yg~~~~v~~s~P~~ig~~Gv~~i~~-l~L~~~E~~~l~~s~~~l~ 314 (322)
T cd01338 236 SAASAANAAIDHMRDWVLGTPEGDWFSMAVPSDGSYGIPEGLIFSFPVRSKGGGYEIVEG-LEIDDFAREKIDATLAELL 314 (322)
T ss_pred cHHHHHHHHHHHHHHHhcCCCCCeEEEEEEEccCccCCCCCeEEEEEEEEeCCEEEEEeC-CCCCHHHHHHHHHHHHHHH
Confidence 887654799998888887543369999999999999998899999999999 89888884 9999999999999999999
Q ss_pred HHHHHH
Q 019990 322 EEKTLA 327 (332)
Q Consensus 322 ~~~~~~ 327 (332)
++.+++
T Consensus 315 ~~~~~~ 320 (322)
T cd01338 315 EEREAV 320 (322)
T ss_pred HHHHHh
Confidence 988765
|
MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subfamily are bacterial MDHs, and plant MDHs localized to the choloroplasts. MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others. |
| >cd01336 MDH_cytoplasmic_cytosolic Cytoplasmic and cytosolic Malate dehydrogenases | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.4e-65 Score=470.25 Aligned_cols=320 Identities=70% Similarity=1.062 Sum_probs=286.3
Q ss_pred CCcEEEEEcCCChhHHHHHHHHHhcccCCCCCCeEEEEEecccchhhhhhhHhhhhhhccCCccceEEeCCHHHHhCCCc
Q 019990 4 NPLRVLVTGAAGQIGYALVPMIARGIMLGPDQPVILHMLDIEPAAEALNGVKMELIDAAFPLLKGVVATTDVVEACKDVN 83 (332)
Q Consensus 4 ~~~kI~VtGaaG~IGs~l~~~L~~~~~~~~~~~~~i~l~D~~~~~~~~~~~~~dl~~~~~~~~~~v~~~~~~~~a~~~aD 83 (332)
+|.||+||||+|+||+++++.|+..++++++...+++|+|++.+.+++.+..+|+.|+..++..++....++++++++||
T Consensus 1 ~~~kV~I~GAaG~VG~~la~~L~~~~~~~~~~~~el~L~D~~~~~~~~~g~~~Dl~d~~~~~~~~~~~~~~~~~~l~~aD 80 (325)
T cd01336 1 EPIRVLVTGAAGQIAYSLLPMIAKGDVFGPDQPVILHLLDIPPALKALEGVVMELQDCAFPLLKSVVATTDPEEAFKDVD 80 (325)
T ss_pred CCeEEEEECCCCHHHHHHHHHHHhCcccCCCCCcEEEEEEcCCccccccceeeehhhccccccCCceecCCHHHHhCCCC
Confidence 47899999988999999999999888765333348999999765456788889999986555557776678889999999
Q ss_pred EEEEecCCCCCCCCChhHHHhhhHHHHHHHHHHHHhhcCCCcEEEEEeCChhhHHHHHHHHCCCCCCCcEEEeecccHHH
Q 019990 84 IAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEKHAAPNCKVLVVANPANTNALILKEFAPSIPAKNITCLTRLDHNR 163 (332)
Q Consensus 84 iVi~~ag~~~~~~~~~~~~~~~N~~~~~~i~~~i~~~~~~~~~viv~snp~~~~~~~~~~~~~~~~~~~i~~~t~l~~~r 163 (332)
+|||+||.+++++++|.+++..|+.+++++++.++++++|+++++++|||+|.+++++++..+++|+++|+++|.||+.|
T Consensus 81 iVI~tAG~~~~~~~~R~~l~~~N~~i~~~i~~~i~~~~~~~~iiivvsNPvD~~t~~~~k~~~~~~~~~ig~gt~LDs~R 160 (325)
T cd01336 81 VAILVGAMPRKEGMERKDLLKANVKIFKEQGEALDKYAKKNVKVLVVGNPANTNALILLKYAPSIPKENFTALTRLDHNR 160 (325)
T ss_pred EEEEeCCcCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCCeEEEEecCcHHHHHHHHHHHcCCCCHHHEEeeehHHHHH
Confidence 99999999999999999999999999999999999997579999999999999999999985578888899999999999
Q ss_pred HHHHHHHHcCCCCCCeeeeEEEecCCCceeecccCcccccCCC----CcchhhhccccccchhHHHHHHHhhHHHHHHhc
Q 019990 164 AMGQISERLKVHVSDVKNVIIWGNHSSTQYPDVNHATVTTSKG----EKPVREAVADDNWLNTEFITTVQQRGAAIIKAR 239 (332)
Q Consensus 164 ~~~~~a~~~~v~~~~v~~~~V~G~hg~~~v~~~s~~~v~~~~~----~~p~~~~~~~~~~~~~~~~~~v~~~~~~i~~~~ 239 (332)
+++++|+++++++++|+.++||||||++++|+||++++ + |+|+.+++.++.|++++|.+++++++++|++.|
T Consensus 161 ~r~~la~~l~v~~~~v~~~~V~GeHG~s~~~~~S~~~v----~~~~~g~~~~~~~~~~~~~~~~i~~~v~~~g~~Ii~~~ 236 (325)
T cd01336 161 AKSQIALKLGVPVSDVKNVIIWGNHSSTQYPDVNHATV----ELNGKGKPAREAVKDDAWLNGEFISTVQKRGAAVIKAR 236 (325)
T ss_pred HHHHHHHHhCcChhhceEeEEEEcCCCCeeecccccee----ecCCCCccHHHHhcccchhHHHHHHHHHhhHHHHHHcc
Confidence 99999999999999998777899999999999999999 8 999999987766778899999999999999986
Q ss_pred CCcchHHHHHHHHHHHHHHHcCCCCCcEEEEEEeecCCCCCCCCeEEEEeEEEe-CCeEEEecCCCCCHHHHHHHHHHHH
Q 019990 240 KLSSALSAASSACDHIRDWVLGTPKGTWVSMGVYSDGSYGIPEGLIYSFPVTCE-KGEWSIVKGLKVDEFSRAKMDATAE 318 (332)
Q Consensus 240 g~~~~~~~a~a~~~~i~~~~~~~~~~~i~~~~v~~~g~yg~~~~~~~s~Pv~~~-~G~~~~~~~~~l~~~E~~~l~~s~~ 318 (332)
++++++++|.++++++.+++.++++++++|+|++++|+||+++++|||+||++| +|+.++++ ++|+++|+++|++|++
T Consensus 237 ~g~t~~~~a~~~~~i~~ail~~~~~~~v~~vs~~~~g~yg~~~~v~~s~P~~ig~~Gv~~i~~-~~L~~~E~~~l~~s~~ 315 (325)
T cd01336 237 KLSSAMSAAKAICDHVHDWWFGTPEGEFVSMGVYSDGSYGVPEGLIFSFPVTCKNGKWKIVQG-LSIDDFSREKIDATAK 315 (325)
T ss_pred ccchHHHHHHHHHHHHHHHHcCCCCCeEEEEEEecCCCcCCCCceEEEEEEEEeCCEEEEecC-CCCCHHHHHHHHHHHH
Confidence 656677889999999988887644589999999999999998899999999999 88888884 9999999999999999
Q ss_pred HHHHHHHHHh
Q 019990 319 ELAEEKTLAY 328 (332)
Q Consensus 319 ~i~~~~~~~~ 328 (332)
.|+++++.++
T Consensus 316 ~l~~e~~~~~ 325 (325)
T cd01336 316 ELVEEKETAL 325 (325)
T ss_pred HHHHHHHhhC
Confidence 9999998763
|
MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subfamily are eukaryotic MDHs localized to the cytoplasm and cytosol. MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others. |
| >cd00704 MDH Malate dehydrogenase | Back alignment and domain information |
|---|
Probab=100.00 E-value=3e-65 Score=469.37 Aligned_cols=317 Identities=60% Similarity=0.916 Sum_probs=282.5
Q ss_pred cEEEEEcCCChhHHHHHHHHHhcccCCCCCCeEEEEEecccchhhhhhhHhhhhhhccCCccceEEeCCHHHHhCCCcEE
Q 019990 6 LRVLVTGAAGQIGYALVPMIARGIMLGPDQPVILHMLDIEPAAEALNGVKMELIDAAFPLLKGVVATTDVVEACKDVNIA 85 (332)
Q Consensus 6 ~kI~VtGaaG~IGs~l~~~L~~~~~~~~~~~~~i~l~D~~~~~~~~~~~~~dl~~~~~~~~~~v~~~~~~~~a~~~aDiV 85 (332)
.||+||||+|+||+++++.|+.+++++.+...+++|+|++.+.+++++.++|+.|...+...++....+.+++++|||+|
T Consensus 1 ~KV~IiGAaG~VG~~~a~~L~~~~~~~~~~~~~l~L~Di~~~~~~~~g~~~Dl~d~~~~~~~~~~i~~~~~~~~~~aDiV 80 (323)
T cd00704 1 LHVLITGAAGQIGYNLLFLIASGELFGDDQPVILHLLDIPPAMKALEGVVMELQDCAFPLLKGVVITTDPEEAFKDVDVA 80 (323)
T ss_pred CEEEEECCCcHHHHHHHHHHHhCCccCCCCceEEEEEecCCccCccceeeeehhhhcccccCCcEEecChHHHhCCCCEE
Confidence 38999998899999999999988887643445799999975335788999999998755554555556778999999999
Q ss_pred EEecCCCCCCCCChhHHHhhhHHHHHHHHHHHHhhcCCCcEEEEEeCChhhHHHHHHHHCCC-CCCCcEEEeecccHHHH
Q 019990 86 VMVGGFPRKEGMERKDVMSKNVSIYKAQASALEKHAAPNCKVLVVANPANTNALILKEFAPS-IPAKNITCLTRLDHNRA 164 (332)
Q Consensus 86 i~~ag~~~~~~~~~~~~~~~N~~~~~~i~~~i~~~~~~~~~viv~snp~~~~~~~~~~~~~~-~~~~~i~~~t~l~~~r~ 164 (332)
||+||.|++++++|.+++..|+++++++++.++++++|+++++++|||+|++++++++. ++ +|++|++|+|.||+.|+
T Consensus 81 VitAG~~~~~g~tR~dll~~N~~i~~~i~~~i~~~~~~~~iiivvsNPvD~~t~~~~k~-sg~~p~~~vig~t~LDs~R~ 159 (323)
T cd00704 81 ILVGAFPRKPGMERADLLRKNAKIFKEQGEALNKVAKPTVKVLVVGNPANTNALIALKN-APNLPPKNFTALTRLDHNRA 159 (323)
T ss_pred EEeCCCCCCcCCcHHHHHHHhHHHHHHHHHHHHHhCCCCeEEEEeCCcHHHHHHHHHHH-cCCCCHHHEEEeeHHHHHHH
Confidence 99999999999999999999999999999999999548999999999999999999998 77 69999878899999999
Q ss_pred HHHHHHHcCCCCCCeeeeEEEecCCCceeecccCcccccCCCCcchhhhc---cccccchhHHHHHHHhhHHHHHHhcCC
Q 019990 165 MGQISERLKVHVSDVKNVIIWGNHSSTQYPDVNHATVTTSKGEKPVREAV---ADDNWLNTEFITTVQQRGAAIIKARKL 241 (332)
Q Consensus 165 ~~~~a~~~~v~~~~v~~~~V~G~hg~~~v~~~s~~~v~~~~~~~p~~~~~---~~~~~~~~~~~~~v~~~~~~i~~~~g~ 241 (332)
++++|++++++|++|+.++||||||++++|+||++++ +|+|+.++. .+++|..++|.+++++++++|++.||+
T Consensus 160 r~~la~~l~v~~~~V~~~~V~GeHG~s~v~~~S~~~v----~g~~~~~~~~~~~~~~~~~~~i~~~v~~~~~~Ii~~kg~ 235 (323)
T cd00704 160 KAQVARKLGVRVSDVKNVIIWGNHSNTQVPDLSNAVV----YGPGGTEWVLDLLDEEWLNDEFVKTVQKRGAAIIKKRGA 235 (323)
T ss_pred HHHHHHHhCcCHHHceeeeEEecccCceeecccccee----cCccHHHhcccccChHHHHHHHHHHHHhhHHHHHhccCc
Confidence 9999999999999997666899999999999999999 999998875 334676789999999999999999999
Q ss_pred cchHHHHHHHHHHHHHHHcCCCCCcEEEEEEeecCCC-CCCCCeEEEEeEEEe-CCeEEEecCCCCCHHHHHHHHHHHHH
Q 019990 242 SSALSAASSACDHIRDWVLGTPKGTWVSMGVYSDGSY-GIPEGLIYSFPVTCE-KGEWSIVKGLKVDEFSRAKMDATAEE 319 (332)
Q Consensus 242 ~~~~~~a~a~~~~i~~~~~~~~~~~i~~~~v~~~g~y-g~~~~~~~s~Pv~~~-~G~~~~~~~~~l~~~E~~~l~~s~~~ 319 (332)
|+|+++|+++++++.+++.+.+.++++|||++++|+| |+|+++|||+||++| +|+.+++ +++|+++|+++|++|++.
T Consensus 236 t~~~~~a~a~~~iv~ail~~~~~~~v~~~s~~~~g~y~gi~~~v~~s~P~~ig~~Gv~~v~-~l~L~~~E~~~l~~s~~~ 314 (323)
T cd00704 236 SSAASAAKAIADHVKDWLFGTPPGEIVSMGVYSPGNPYGIPPGIVFSFPCTCKGGGWHVVE-DLKLNDWLREKLKATEEE 314 (323)
T ss_pred chhHHHHHHHHHHHHHHHhCCCCCcEEEEEEEeCCccCCCCCceEEEEEEEEcCCEEEEec-CCCCCHHHHHHHHHHHHH
Confidence 9987789999999998887542238999999999999 998899999999999 8888887 599999999999999999
Q ss_pred HHHHHHHHh
Q 019990 320 LAEEKTLAY 328 (332)
Q Consensus 320 i~~~~~~~~ 328 (332)
|+++.+.++
T Consensus 315 l~~~~~~~~ 323 (323)
T cd00704 315 LIEEKEIAL 323 (323)
T ss_pred HHHHHHhhC
Confidence 999988764
|
Malate dehydrogenase (MDH) is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. MDHs belong to the NAD-dependent, lactate dehydrogenase (LDH)-like, 2-hydroxycarboxylate dehydrogenase family, which also includes the GH4 family of glycoside hydrolases. They are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others. |
| >TIGR01758 MDH_euk_cyt malate dehydrogenase, NAD-dependent | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.7e-64 Score=461.63 Aligned_cols=318 Identities=71% Similarity=1.106 Sum_probs=281.5
Q ss_pred EEEEEcCCChhHHHHHHHHHhcccCCCCCCeEEEEEecccchhhhhhhHhhhhhhccCCccceEEeCCHHHHhCCCcEEE
Q 019990 7 RVLVTGAAGQIGYALVPMIARGIMLGPDQPVILHMLDIEPAAEALNGVKMELIDAAFPLLKGVVATTDVVEACKDVNIAV 86 (332)
Q Consensus 7 kI~VtGaaG~IGs~l~~~L~~~~~~~~~~~~~i~l~D~~~~~~~~~~~~~dl~~~~~~~~~~v~~~~~~~~a~~~aDiVi 86 (332)
||+||||+|+||+++++.|...++++.++..+++|+|++++.+++.+.++|+.|...+....+....+.++++++||+||
T Consensus 1 ~V~IiGaaG~VG~~~a~~l~~~~~~~~~~e~el~LiD~~~~~~~a~g~~~Dl~d~~~~~~~~~~~~~~~~~~~~~aDiVV 80 (324)
T TIGR01758 1 RVVVTGAAGQIGYALLPMIARGRMLGKDQPIILHLLDIPPAMKVLEGVVMELMDCAFPLLDGVVPTHDPAVAFTDVDVAI 80 (324)
T ss_pred CEEEECCCcHHHHHHHHHHHhccccCCCCccEEEEEecCCcccccceeEeehhcccchhcCceeccCChHHHhCCCCEEE
Confidence 69999988999999999999988875433347999999765556889999999987554444544446689999999999
Q ss_pred EecCCCCCCCCChhHHHhhhHHHHHHHHHHHHhhcCCCcEEEEEeCChhhHHHHHHHHCCCCCCCcEEEeecccHHHHHH
Q 019990 87 MVGGFPRKEGMERKDVMSKNVSIYKAQASALEKHAAPNCKVLVVANPANTNALILKEFAPSIPAKNITCLTRLDHNRAMG 166 (332)
Q Consensus 87 ~~ag~~~~~~~~~~~~~~~N~~~~~~i~~~i~~~~~~~~~viv~snp~~~~~~~~~~~~~~~~~~~i~~~t~l~~~r~~~ 166 (332)
|+||.+++++++|.+++..|+++++++++.++++++|+++++++|||+|+|+++++++...+|++.|+++|.||+.|+++
T Consensus 81 itAG~~~~~~~tr~~ll~~N~~i~k~i~~~i~~~~~~~~iiivvsNPvDv~t~v~~~~sg~~~~~vig~gt~LDs~R~r~ 160 (324)
T TIGR01758 81 LVGAFPRKEGMERRDLLSKNVKIFKEQGRALDKLAKKDCKVLVVGNPANTNALVLSNYAPSIPPKNFSALTRLDHNRALA 160 (324)
T ss_pred EcCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHhhCCCCeEEEEeCCcHHHHHHHHHHHcCCCCcceEEEeeehHHHHHHH
Confidence 99999999999999999999999999999999995489999999999999999999983345555689999999999999
Q ss_pred HHHHHcCCCCCCeeeeEEEecCCCceeecccCcccccCCC-C---cchhhhccccccchhHHHHHHHhhHHHHHHhcCCc
Q 019990 167 QISERLKVHVSDVKNVIIWGNHSSTQYPDVNHATVTTSKG-E---KPVREAVADDNWLNTEFITTVQQRGAAIIKARKLS 242 (332)
Q Consensus 167 ~~a~~~~v~~~~v~~~~V~G~hg~~~v~~~s~~~v~~~~~-~---~p~~~~~~~~~~~~~~~~~~v~~~~~~i~~~~g~~ 242 (332)
++|+++++++++|+..+||||||++++|+||++++ + | +|+.+++.++.|+++++.+++++++++|++.||++
T Consensus 161 ~la~~l~v~~~~V~~~~V~GeHG~s~v~~~S~~~v----~~g~~~~pl~~~~~~~~~~~~~i~~~v~~~g~~Ii~~k~~~ 236 (324)
T TIGR01758 161 QVAERAGVPVSDVKNVIIWGNHSSTQYPDVNHATV----TKGGKQKPVREAIKDDAYLDGEFITTVQQRGAAIIRARKLS 236 (324)
T ss_pred HHHHHhCCChhhceEeEEEECCCCCccccccccee----cCCCCccCHHHHhcchhhHHHHHHHHHHhCHHHHHhccCCC
Confidence 99999999999998656899999999999999999 8 9 99999987765767899999999999999988867
Q ss_pred chHHHHHHHHHHHHHHHcCCCCCcEEEEEEeecCC-CCCCCCeEEEEeEEEeCCeEEEecCCCCCHHHHHHHHHHHHHHH
Q 019990 243 SALSAASSACDHIRDWVLGTPKGTWVSMGVYSDGS-YGIPEGLIYSFPVTCEKGEWSIVKGLKVDEFSRAKMDATAEELA 321 (332)
Q Consensus 243 ~~~~~a~a~~~~i~~~~~~~~~~~i~~~~v~~~g~-yg~~~~~~~s~Pv~~~~G~~~~~~~~~l~~~E~~~l~~s~~~i~ 321 (332)
+.+++|.++++++.+++.+.|+++++|+|++++|+ ||+|+++|||+||++++|+|+++.+++|+++|+++|++|++.|+
T Consensus 237 t~~~ia~~~~~i~~ai~~~~~~~~i~~vs~~~~g~~yg~~~~v~~s~P~~ig~g~~~~i~el~L~~~E~~~l~~s~~~lk 316 (324)
T TIGR01758 237 SALSAAKAAVDQMHDWVLGTPEGTFVSMGVYSDGSPYGVPKGLIFSFPVTCKNGEWKIVEGLCVDDSSRKKLALTAKELE 316 (324)
T ss_pred HHHHHHHHHHHHHHHHhcCCCCCeEEEEEeecCCcccCCCCceEEEEEEEEcCCeEEEecCCCCCHHHHHHHHHHHHHHH
Confidence 77888999999999888555678999999999999 99988999999999998888877679999999999999999999
Q ss_pred HHHHHHh
Q 019990 322 EEKTLAY 328 (332)
Q Consensus 322 ~~~~~~~ 328 (332)
+.++.++
T Consensus 317 ~~~~~~~ 323 (324)
T TIGR01758 317 EERDEAL 323 (324)
T ss_pred HHHHHhh
Confidence 9998874
|
This model represents the NAD-dependent cytosolic malate dehydrogenase from eukaryotes. The enzyme from pig has been studied by X-ray crystallography |
| >cd05295 MDH_like Malate dehydrogenase-like | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.8e-63 Score=463.68 Aligned_cols=318 Identities=35% Similarity=0.626 Sum_probs=284.9
Q ss_pred CCCcEEEEEcCCChhHHHHHHHHHhcccCCCCCCeEEEEEecccchhhhhhhHhhhhhhccCCccceEEeCCHHHHhCCC
Q 019990 3 KNPLRVLVTGAAGQIGYALVPMIARGIMLGPDQPVILHMLDIEPAAEALNGVKMELIDAAFPLLKGVVATTDVVEACKDV 82 (332)
Q Consensus 3 ~~~~kI~VtGaaG~IGs~l~~~L~~~~~~~~~~~~~i~l~D~~~~~~~~~~~~~dl~~~~~~~~~~v~~~~~~~~a~~~a 82 (332)
++|.+|+||||+|.||++|+.+|+.+.++|.+.+..++|+|+..+.+++.|.++||.|+.+++..++..+++.+++++||
T Consensus 121 ~~p~~V~vtgAag~i~Y~l~~~ia~G~~fG~~~~v~L~LlDi~~~~~~l~G~amDL~D~a~pll~~v~i~~~~~ea~~da 200 (452)
T cd05295 121 INPLQVCITNASAPLCYHLIPSLASGEVFGMEEEISIHLLDSPENLEKLKGLVMEVEDLAFPLLRGISVTTDLDVAFKDA 200 (452)
T ss_pred CCceEEEEecCcHHHHHHHHHHHhCCcccCCCCeEEEEEEcCCCchhhHHHHHHHHHHhHHhhcCCcEEEECCHHHhCCC
Confidence 35789999999999999999999999999999899999999965567899999999999877766676667778999999
Q ss_pred cEEEEecCCCCCCCCChhHHHhhhHHHHHHHHHHHHhhcCC-CcEEEEEeCChhhHHHHHHHHCCCCCCCcEEEeecccH
Q 019990 83 NIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEKHAAP-NCKVLVVANPANTNALILKEFAPSIPAKNITCLTRLDH 161 (332)
Q Consensus 83 DiVi~~ag~~~~~~~~~~~~~~~N~~~~~~i~~~i~~~~~~-~~~viv~snp~~~~~~~~~~~~~~~~~~~i~~~t~l~~ 161 (332)
|+||++||.|+++|++|.++++.|+++++.+++++.+++++ ...+|+.|||+|++++++++.++++|+++|+|.+.+++
T Consensus 201 DvvIitag~prk~G~~R~DLL~~N~~Ifk~~g~~I~~~a~~~~~VlVv~tNPvD~~t~i~~k~apgiP~~rVig~gtlds 280 (452)
T cd05295 201 HVIVLLDDFLIKEGEDLEGCIRSRVAICQLYGPLIEKNAKEDVKVIVAGRTFLNLKTSILIKYAPSIPRKNIIAVARLQE 280 (452)
T ss_pred CEEEECCCCCCCcCCCHHHHHHHHHHHHHHHHHHHHHhCCCCCeEEEEeCCcHHHHHHHHHHHcCCCCHHHEEEecchHH
Confidence 99999999999999999999999999999999999999833 45667777999999999999865999999888888999
Q ss_pred HHHHHHHHHHcCCCCCCeeeeEEEecCCCceeecccCcccccCCCC------------cchhhhccccccchhHHHHHHH
Q 019990 162 NRAMGQISERLKVHVSDVKNVIIWGNHSSTQYPDVNHATVTTSKGE------------KPVREAVADDNWLNTEFITTVQ 229 (332)
Q Consensus 162 ~r~~~~~a~~~~v~~~~v~~~~V~G~hg~~~v~~~s~~~v~~~~~~------------~p~~~~~~~~~~~~~~~~~~v~ 229 (332)
.|+++++|+++|+++++|+..+|||+||+++||+||+++| +| +|+.+++.+++|..+++.+.++
T Consensus 281 ~R~r~~LA~kl~V~~~~V~~~~VwGeHG~sqvpd~S~a~V----~G~~~a~~~p~~~~~pl~e~i~d~~w~~~~~~~~v~ 356 (452)
T cd05295 281 NRAKALLARKLNVNSAGIKDVIVWGNIGGNTYIDLSKARV----YRYDSAIWGPPNYSRPVLELVHDSKWINGEFVATLK 356 (452)
T ss_pred HHHHHHHHHHhCcCHHHceeeEEEEccCCceeeeeeEEEE----cccccccccccccCccHHHHhcchhhhHHHHHHHHH
Confidence 9999999999999999997777899999999999999999 65 9999998777888889999999
Q ss_pred hhHHHHHHhcCCcchHHHHHHHHHHHHHHHcCCCCCcEEEEEEeecCCCCCCCCeEEEEeEEEeCCeEEEecCCCCCHHH
Q 019990 230 QRGAAIIKARKLSSALSAASSACDHIRDWVLGTPKGTWVSMGVYSDGSYGIPEGLIYSFPVTCEKGEWSIVKGLKVDEFS 309 (332)
Q Consensus 230 ~~~~~i~~~~g~~~~~~~a~a~~~~i~~~~~~~~~~~i~~~~v~~~g~yg~~~~~~~s~Pv~~~~G~~~~~~~~~l~~~E 309 (332)
+++. ++|| ++++++|.|+++++++|+.++++++|+|+||+++|+||+|+|+|||+||++++|.|+++.+++|+++|
T Consensus 357 ~rg~---~rkg-sT~~siA~A~~~iv~ail~~t~~~~ilsvsv~sdG~YGip~gv~~S~Pviig~~Gve~V~~L~L~e~E 432 (452)
T cd05295 357 SLSS---SLNH-EAAISPAHAIATTLSYWYHGSPPGEIFSLGVISEGWYGIPEGIVFSMPVKFQNGSWEVVTDLELSEIL 432 (452)
T ss_pred HHHH---hccC-ChHHHHHHHHHHHHHHHHhCCCCCeEEEEEEeeccccCCcCCEEEEEEEEEeCCeEEEEeCCCCCHHH
Confidence 9988 5555 66678899999999999987545899999999999999999999999999994445544469999999
Q ss_pred HHHHHHHHHHHHHHHHHHh
Q 019990 310 RAKMDATAEELAEEKTLAY 328 (332)
Q Consensus 310 ~~~l~~s~~~i~~~~~~~~ 328 (332)
+++|++|+++|.++.+.+.
T Consensus 433 ~~kL~~S~~eL~~E~~~~~ 451 (452)
T cd05295 433 REVLKRITSDLIQEKLVAL 451 (452)
T ss_pred HHHHHHHHHHHHHHHHhhc
Confidence 9999999999999887763
|
These MDH-like proteins are related to other groups in the MDH family but do not have conserved substrate and cofactor binding residues. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subgroup are uncharacterized MDH-like proteins from animals. They are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others. |
| >cd05290 LDH_3 A subgroup of L-lactate dehydrogenases | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.9e-62 Score=445.08 Aligned_cols=298 Identities=20% Similarity=0.315 Sum_probs=265.8
Q ss_pred EEEEEcCCChhHHHHHHHHHhcccCCCCCCeEEEEEecccchhhhhhhHhhhhhhccCC-ccceEEeCCHHHHhCCCcEE
Q 019990 7 RVLVTGAAGQIGYALVPMIARGIMLGPDQPVILHMLDIEPAAEALNGVKMELIDAAFPL-LKGVVATTDVVEACKDVNIA 85 (332)
Q Consensus 7 kI~VtGaaG~IGs~l~~~L~~~~~~~~~~~~~i~l~D~~~~~~~~~~~~~dl~~~~~~~-~~~v~~~~~~~~a~~~aDiV 85 (332)
||+|+| +|+||+++++.|+.+++++ +++|+|++. ++++|.++||.|..... ..++....+.+++++|||+|
T Consensus 1 Ki~IIG-aG~VG~~~a~~l~~~~~~~-----elvL~Di~~--~~a~g~a~DL~~~~~~~~~~~~~i~~~~y~~~~~aDiv 72 (307)
T cd05290 1 KLVVIG-AGHVGSAVLNYALALGLFS-----EIVLIDVNE--GVAEGEALDFHHATALTYSTNTKIRAGDYDDCADADII 72 (307)
T ss_pred CEEEEC-CCHHHHHHHHHHHhcCCCC-----EEEEEeCCc--chhhHHHHHHHhhhccCCCCCEEEEECCHHHhCCCCEE
Confidence 799999 5999999999999888875 999999964 57899999999965322 23444444457899999999
Q ss_pred EEecCCCCCCCCC--hhHHHhhhHHHHHHHHHHHHhhcCCCcEEEEEeCChhhHHHHHHHHCCCCCCCc-EEEeecccHH
Q 019990 86 VMVGGFPRKEGME--RKDVMSKNVSIYKAQASALEKHAAPNCKVLVVANPANTNALILKEFAPSIPAKN-ITCLTRLDHN 162 (332)
Q Consensus 86 i~~ag~~~~~~~~--~~~~~~~N~~~~~~i~~~i~~~~~~~~~viv~snp~~~~~~~~~~~~~~~~~~~-i~~~t~l~~~ 162 (332)
|++||.++++|++ |.+++..|+++++++++.+.+++ |+++++++|||+|+|++++++. +++|++| |+.+|.||+.
T Consensus 73 vitaG~~~kpg~tr~R~dll~~N~~I~~~i~~~i~~~~-p~~i~ivvsNPvDv~t~~~~k~-sg~p~~rviG~gt~LDs~ 150 (307)
T cd05290 73 VITAGPSIDPGNTDDRLDLAQTNAKIIREIMGNITKVT-KEAVIILITNPLDIAVYIAATE-FDYPANKVIGTGTMLDTA 150 (307)
T ss_pred EECCCCCCCCCCCchHHHHHHHHHHHHHHHHHHHHHhC-CCeEEEEecCcHHHHHHHHHHH-hCcChhheecccchHHHH
Confidence 9999999999998 69999999999999999999998 8999999999999999999998 8999999 5677999999
Q ss_pred HHHHHHHHHcCCCCCCeeeeEEEecCCCceeecccCcccccCCCCcchhhhccc---cccchhHHHHHHHhhHHHHHHhc
Q 019990 163 RAMGQISERLKVHVSDVKNVIIWGNHSSTQYPDVNHATVTTSKGEKPVREAVAD---DNWLNTEFITTVQQRGAAIIKAR 239 (332)
Q Consensus 163 r~~~~~a~~~~v~~~~v~~~~V~G~hg~~~v~~~s~~~v~~~~~~~p~~~~~~~---~~~~~~~~~~~v~~~~~~i~~~~ 239 (332)
|+++++|+++|+++.+|+++ |||+||++++|+||++++ +|+|+.+++.. +.|..+++.+++++++++|++.|
T Consensus 151 R~~~~la~~l~v~~~~V~~~-ViGeHGds~vp~wS~~~v----~g~~l~~~~~~~~~~~~~~~~i~~~v~~~g~~Ii~~K 225 (307)
T cd05290 151 RLRRIVADKYGVDPKNVTGY-VLGEHGSHAFPVWSLVNI----AGLPLDELEALFGKEPIDKDELLEEVVQAAYDVFNRK 225 (307)
T ss_pred HHHHHHHHHhCCCcccEEEE-EEecCCCceEEeeeeeEE----CCEEHHHHHhhcCCCHHHHHHHHHHHHHHHHHHHHcc
Confidence 99999999999999999997 699999999999999999 99999998752 34456899999999999999999
Q ss_pred CCcchHHHHHHHHHHHHHHHcCCCCCcEEEEEEeecCCCCCCCCeEEEEeEEEe-CCeEEEecCCCCCHHHHHHHHHHHH
Q 019990 240 KLSSALSAASSACDHIRDWVLGTPKGTWVSMGVYSDGSYGIPEGLIYSFPVTCE-KGEWSIVKGLKVDEFSRAKMDATAE 318 (332)
Q Consensus 240 g~~~~~~~a~a~~~~i~~~~~~~~~~~i~~~~v~~~g~yg~~~~~~~s~Pv~~~-~G~~~~~~~~~l~~~E~~~l~~s~~ 318 (332)
|.|+|. +|.++++++.+++. |+++++|+|++.+|+||. +++|||+||+++ +|++++++ ++||++|+++|++|++
T Consensus 226 G~t~~~-ia~a~~~ii~ail~--d~~~v~~vsv~~~G~yg~-~~v~~svP~~ig~~Gv~~i~~-l~L~~~E~~~l~~s~~ 300 (307)
T cd05290 226 GWTNAG-IAKSASRLIKAILL--DERSILPVCTLLSGEYGL-SDVALSLPTVIGAKGIERVLE-IPLDEWELEKLHKSAK 300 (307)
T ss_pred CeehHH-HHHHHHHHHHHHHh--CCCeEEEEEEeeCCccCC-CCEEEEEEEEEeCCCceEecC-CCCCHHHHHHHHHHHH
Confidence 987764 57899988887665 458999999999999994 799999999999 99999995 9999999999999999
Q ss_pred HHHHHH
Q 019990 319 ELAEEK 324 (332)
Q Consensus 319 ~i~~~~ 324 (332)
.|++.+
T Consensus 301 ~i~~~~ 306 (307)
T cd05290 301 AIRETI 306 (307)
T ss_pred HHHHHh
Confidence 999865
|
L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed of some bacterial LDHs from firmicutes, gammaproteobacteria, and actinobacteria. Vertebrate LDHs are non-allosteric, but some bacterial LDHs are activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenase, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others. |
| >PRK00066 ldh L-lactate dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-60 Score=437.29 Aligned_cols=306 Identities=24% Similarity=0.343 Sum_probs=272.3
Q ss_pred CCCCCcEEEEEcCCChhHHHHHHHHHhcccCCCCCCeEEEEEecccchhhhhhhHhhhhhhccCCccceEEeCCHHHHhC
Q 019990 1 MAKNPLRVLVTGAAGQIGYALVPMIARGIMLGPDQPVILHMLDIEPAAEALNGVKMELIDAAFPLLKGVVATTDVVEACK 80 (332)
Q Consensus 1 m~~~~~kI~VtGaaG~IGs~l~~~L~~~~~~~~~~~~~i~l~D~~~~~~~~~~~~~dl~~~~~~~~~~v~~~~~~~~a~~ 80 (332)
|++.++||+|+|| |.||+++++.|+..++++ +++|+|++. ++++|.++|+.|+.... .++....+.+++++
T Consensus 2 ~~~~~~ki~iiGa-G~vG~~~a~~l~~~~~~~-----el~L~D~~~--~~~~g~~~Dl~~~~~~~-~~~~i~~~~~~~~~ 72 (315)
T PRK00066 2 MKKQHNKVVLVGD-GAVGSSYAYALVNQGIAD-----ELVIIDINK--EKAEGDAMDLSHAVPFT-SPTKIYAGDYSDCK 72 (315)
T ss_pred CCCCCCEEEEECC-CHHHHHHHHHHHhcCCCC-----EEEEEeCCC--chhHHHHHHHHhhcccc-CCeEEEeCCHHHhC
Confidence 6677899999995 999999999999888764 899999964 57899999999986322 34454555678899
Q ss_pred CCcEEEEecCCCCCCCCChhHHHhhhHHHHHHHHHHHHhhcCCCcEEEEEeCChhhHHHHHHHHCCCCCCCcE-EEeecc
Q 019990 81 DVNIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEKHAAPNCKVLVVANPANTNALILKEFAPSIPAKNI-TCLTRL 159 (332)
Q Consensus 81 ~aDiVi~~ag~~~~~~~~~~~~~~~N~~~~~~i~~~i~~~~~~~~~viv~snp~~~~~~~~~~~~~~~~~~~i-~~~t~l 159 (332)
+||+||++||.|++++++|.+++..|+++++++++.+++++ |+++++++|||+|.++++++++ +++|++++ +.+|.+
T Consensus 73 ~adivIitag~~~k~g~~R~dll~~N~~i~~~i~~~i~~~~-~~~~vivvsNP~d~~~~~~~k~-sg~p~~~viG~gt~L 150 (315)
T PRK00066 73 DADLVVITAGAPQKPGETRLDLVEKNLKIFKSIVGEVMASG-FDGIFLVASNPVDILTYATWKL-SGFPKERVIGSGTSL 150 (315)
T ss_pred CCCEEEEecCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhC-CCeEEEEccCcHHHHHHHHHHH-hCCCHHHEeecCchH
Confidence 99999999999999999999999999999999999999998 8999999999999999999998 78999996 566999
Q ss_pred cHHHHHHHHHHHcCCCCCCeeeeEEEecCCCceeecccCcccccCCCCcchhhhccccccc----hhHHHHHHHhhHHHH
Q 019990 160 DHNRAMGQISERLKVHVSDVKNVIIWGNHSSTQYPDVNHATVTTSKGEKPVREAVADDNWL----NTEFITTVQQRGAAI 235 (332)
Q Consensus 160 ~~~r~~~~~a~~~~v~~~~v~~~~V~G~hg~~~v~~~s~~~v~~~~~~~p~~~~~~~~~~~----~~~~~~~v~~~~~~i 235 (332)
|+.|+++++|+++|+++++|+.+ |||+||++++|+||++++ +|+|+.+++.+..|. .+++.+++++++++|
T Consensus 151 Ds~R~~~~la~~l~v~~~~V~~~-viGeHG~s~v~~~S~~~v----~g~~l~~~~~~~~~~~~~~~~~i~~~v~~~g~~i 225 (315)
T PRK00066 151 DSARFRYMLSEKLDVDPRSVHAY-IIGEHGDTEFPVWSHANV----AGVPLEEYLEENEQYDEEDLDEIFENVRDAAYEI 225 (315)
T ss_pred HHHHHHHHHHHHhCCCcccEEEE-EEecCCCcceecceeceE----CCEEHHHHhhhccCcCHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999997 689999999999999999 999999997664442 457999999999999
Q ss_pred HHhcCCcchHHHHHHHHHHHHHHHcCCCCCcEEEEEEeecCCCCCCCCeEEEEeEEEe-CCeEEEecCCCCCHHHHHHHH
Q 019990 236 IKARKLSSALSAASSACDHIRDWVLGTPKGTWVSMGVYSDGSYGIPEGLIYSFPVTCE-KGEWSIVKGLKVDEFSRAKMD 314 (332)
Q Consensus 236 ~~~~g~~~~~~~a~a~~~~i~~~~~~~~~~~i~~~~v~~~g~yg~~~~~~~s~Pv~~~-~G~~~~~~~~~l~~~E~~~l~ 314 (332)
++.||+++| ++|+++++++.+++. ++++++|+|++++|+||. +++|||+||++| +|++++++ ++||++|+++|+
T Consensus 226 i~~kg~t~~-~~a~~~~~i~~ail~--~~~~v~~~sv~~~g~yg~-~~v~~S~Pv~ig~~Gv~~i~~-l~L~~~E~~~L~ 300 (315)
T PRK00066 226 IEKKGATYY-GIAMALARITKAILN--NENAVLPVSAYLEGQYGE-EDVYIGVPAVVNRNGIREIVE-LPLNDDEKQKFA 300 (315)
T ss_pred HhcCCeehH-HHHHHHHHHHHHHHc--CCCeEEEEEEEeccccCC-CCEEEEeEEEEeCCcEEEEcC-CCCCHHHHHHHH
Confidence 999998875 568888888877665 468999999999999995 899999999999 99999985 999999999999
Q ss_pred HHHHHHHHHHHHH
Q 019990 315 ATAEELAEEKTLA 327 (332)
Q Consensus 315 ~s~~~i~~~~~~~ 327 (332)
+|+++|++.++..
T Consensus 301 ~s~~~l~~~~~~~ 313 (315)
T PRK00066 301 HSADVLKEIMDEA 313 (315)
T ss_pred HHHHHHHHHHHHh
Confidence 9999999998753
|
|
| >TIGR01771 L-LDH-NAD L-lactate dehydrogenase | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.9e-61 Score=436.38 Aligned_cols=293 Identities=22% Similarity=0.332 Sum_probs=263.9
Q ss_pred EEcCCChhHHHHHHHHHhcccCCCCCCeEEEEEecccchhhhhhhHhhhhhhccCCccceEEeCCHHHHhCCCcEEEEec
Q 019990 10 VTGAAGQIGYALVPMIARGIMLGPDQPVILHMLDIEPAAEALNGVKMELIDAAFPLLKGVVATTDVVEACKDVNIAVMVG 89 (332)
Q Consensus 10 VtGaaG~IGs~l~~~L~~~~~~~~~~~~~i~l~D~~~~~~~~~~~~~dl~~~~~~~~~~v~~~~~~~~a~~~aDiVi~~a 89 (332)
|+| +|+||+++++.|+..++++ +++|+|++. +++.|.++||.|+..+...++....+.++++++||+||++|
T Consensus 1 iIG-aG~VG~~~a~~l~~~~l~~-----el~L~Di~~--~~~~g~a~Dl~~~~~~~~~~~~i~~~~~~~~~daDivVita 72 (299)
T TIGR01771 1 IIG-AGNVGSSTAFALLNQGIAD-----EIVLIDINK--DKAEGEAMDLQHAASFLPTPKKIRSGDYSDCKDADLVVITA 72 (299)
T ss_pred CCC-cCHHHHHHHHHHHhcCCCC-----EEEEEeCCC--ChhhHHHHHHHHhhcccCCCeEEecCCHHHHCCCCEEEECC
Confidence 578 6999999999999888865 999999964 57899999999987655555555556678999999999999
Q ss_pred CCCCCCCCChhHHHhhhHHHHHHHHHHHHhhcCCCcEEEEEeCChhhHHHHHHHHCCCCCCCcE-EEeecccHHHHHHHH
Q 019990 90 GFPRKEGMERKDVMSKNVSIYKAQASALEKHAAPNCKVLVVANPANTNALILKEFAPSIPAKNI-TCLTRLDHNRAMGQI 168 (332)
Q Consensus 90 g~~~~~~~~~~~~~~~N~~~~~~i~~~i~~~~~~~~~viv~snp~~~~~~~~~~~~~~~~~~~i-~~~t~l~~~r~~~~~ 168 (332)
|.|+++|++|.+++..|+++++++++.+++++ |+++++++|||+|+++++++++ +++|++++ +.+|.||+.|+++++
T Consensus 73 g~~rk~g~~R~dll~~N~~i~~~~~~~i~~~~-p~~~vivvsNP~d~~t~~~~~~-sg~p~~~viG~gt~LDs~R~~~~l 150 (299)
T TIGR01771 73 GAPQKPGETRLELVGRNVRIMKSIVPEVVKSG-FDGIFLVATNPVDILTYVAWKL-SGFPKNRVIGSGTVLDTARLRYLL 150 (299)
T ss_pred CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhC-CCeEEEEeCCHHHHHHHHHHHH-hCCCHHHEEeccchHHHHHHHHHH
Confidence 99999999999999999999999999999997 9999999999999999999998 79999995 566999999999999
Q ss_pred HHHcCCCCCCeeeeEEEecCCCceeecccCcccccCCCCcchhhhccc----cccchhHHHHHHHhhHHHHHHhcCCcch
Q 019990 169 SERLKVHVSDVKNVIIWGNHSSTQYPDVNHATVTTSKGEKPVREAVAD----DNWLNTEFITTVQQRGAAIIKARKLSSA 244 (332)
Q Consensus 169 a~~~~v~~~~v~~~~V~G~hg~~~v~~~s~~~v~~~~~~~p~~~~~~~----~~~~~~~~~~~v~~~~~~i~~~~g~~~~ 244 (332)
|+++++++.+|+++ |||+||++++|+||++++ +|+|+.+++.+ ..|.++++.+++++++++|++.||+|+|
T Consensus 151 a~~l~v~~~~V~~~-v~GeHG~s~vp~~S~~~v----~g~pl~~~~~~~~~~~~~~~~~i~~~v~~~g~~ii~~kG~t~~ 225 (299)
T TIGR01771 151 AEKLGVDPQSVHAY-IIGEHGDSEVPVWSSATI----GGVPLLDYLKAKGTETDLDLEEIEKEVRDAAYEIINRKGATYY 225 (299)
T ss_pred HHHhCcCcCeEEEE-EEecCCCceeeceeeeEE----CCEEHHHHhhhcccccHHHHHHHHHHHHHHHHHHhhcCCeeeH
Confidence 99999999999987 699999999999999999 99999998754 2344678999999999999999997775
Q ss_pred HHHHHHHHHHHHHHHcCCCCCcEEEEEEeecCCCCCCCCeEEEEeEEEe-CCeEEEecCCCCCHHHHHHHHHHHHHHHH
Q 019990 245 LSAASSACDHIRDWVLGTPKGTWVSMGVYSDGSYGIPEGLIYSFPVTCE-KGEWSIVKGLKVDEFSRAKMDATAEELAE 322 (332)
Q Consensus 245 ~~~a~a~~~~i~~~~~~~~~~~i~~~~v~~~g~yg~~~~~~~s~Pv~~~-~G~~~~~~~~~l~~~E~~~l~~s~~~i~~ 322 (332)
++|+++++++.+++.+ +++++|+|++++|+||+ .++|||+||++| +|++++++ ++|+++|+++|++|++.|++
T Consensus 226 -~~a~a~~~~i~ail~d--~~~v~~~s~~~~g~yg~-~~~~~s~P~~ig~~Gv~~i~~-l~L~~~E~~~l~~s~~~ik~ 299 (299)
T TIGR01771 226 -GIGMAVARIVEAILHD--ENRVLPVSAYLDGEYGI-KDVYIGVPAVLGRNGVEEIIE-LPLSDEEKEAFQKSAETLKK 299 (299)
T ss_pred -HHHHHHHHHHHHHHcC--CCcEEEEEEEecccCCC-CCEEEEEEEEEeCCeeEEEcc-CCCCHHHHHHHHHHHHHHhC
Confidence 4678999988887764 58999999999999998 689999999999 99999995 99999999999999999873
|
This model represents the NAD-dependent L-lactate dehydrogenases from bacteria and eukaryotes. This enzyme function as as the final step in anaerobic glycolysis. Although lactate dehydrogenases have in some cases been mistaken for malate dehydrogenases due to the similarity of these two substrates and the apparent ease with which evolution can toggle these activities, critical residues have been identified which can discriminate between the two activities. At the time of the creation of this model no hits above the trusted cutoff contained critical residues typical of malate dehydrogenases. |
| >PLN00135 malate dehydrogenase | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-60 Score=432.29 Aligned_cols=304 Identities=88% Similarity=1.284 Sum_probs=266.6
Q ss_pred HhcccCCCCCCeEEEEEecccchhhhhhhHhhhhhhccCCccceEEeCCHHHHhCCCcEEEEecCCCCCCCCChhHHHhh
Q 019990 26 ARGIMLGPDQPVILHMLDIEPAAEALNGVKMELIDAAFPLLKGVVATTDVVEACKDVNIAVMVGGFPRKEGMERKDVMSK 105 (332)
Q Consensus 26 ~~~~~~~~~~~~~i~l~D~~~~~~~~~~~~~dl~~~~~~~~~~v~~~~~~~~a~~~aDiVi~~ag~~~~~~~~~~~~~~~ 105 (332)
+.+.++|.+.+..++|+|++++++++.|+++|+.|+..+....+....+.++++++||+||++||.+++++++|.+++..
T Consensus 3 ~~g~~~g~~~~~~l~L~D~~~~~~~a~g~~~Dl~da~~~~~~~i~~~~~~y~~~~daDiVVitAG~~~k~g~sR~dll~~ 82 (309)
T PLN00135 3 ARGVMLGPDQPVILHMLDIPPAAEALNGVKMELIDAAFPLLKGVVATTDVVEACKGVNIAVMVGGFPRKEGMERKDVMSK 82 (309)
T ss_pred ccccccCCCCeEEEEEecCcccccchhhHHHHHHhhhHHhcCCcEecCCHHHHhCCCCEEEEeCCCCCCCCCcHHHHHHH
Confidence 34556676667799999998766789999999999875544456555666899999999999999999999999999999
Q ss_pred hHHHHHHHHHHHHhhcCCCcEEEEEeCChhhHHHHHHHHCCCCCCCc-EEEeecccHHHHHHHHHHHcCCCCCCeeeeEE
Q 019990 106 NVSIYKAQASALEKHAAPNCKVLVVANPANTNALILKEFAPSIPAKN-ITCLTRLDHNRAMGQISERLKVHVSDVKNVII 184 (332)
Q Consensus 106 N~~~~~~i~~~i~~~~~~~~~viv~snp~~~~~~~~~~~~~~~~~~~-i~~~t~l~~~r~~~~~a~~~~v~~~~v~~~~V 184 (332)
|+++++++++.+.+++.|+++++++|||+|+|++++++. +++|+++ |+++|.||+.|+++++|+++|+++++|+..+|
T Consensus 83 N~~I~~~i~~~i~~~~~p~aivivvsNPvDv~t~~~~~~-sg~~~~~vig~gt~LDsaR~r~~la~~l~v~~~~V~~~~V 161 (309)
T PLN00135 83 NVSIYKSQASALEKHAAPDCKVLVVANPANTNALILKEF-APSIPEKNITCLTRLDHNRALGQISERLGVPVSDVKNVII 161 (309)
T ss_pred HHHHHHHHHHHHHHhcCCCeEEEEeCCcHHHHHHHHHHH-cCCCCccEEEeeehHHHHHHHHHHHHHhCcChhhceeeEE
Confidence 999999999999996238999999999999999999998 7888876 88999999999999999999999999943347
Q ss_pred EecCCCceeecccCcccccCCCCcchhhhccccccchhHHHHHHHhhHHHHHHhcCCcchHHHHHHHHHHHHHHHcCCCC
Q 019990 185 WGNHSSTQYPDVNHATVTTSKGEKPVREAVADDNWLNTEFITTVQQRGAAIIKARKLSSALSAASSACDHIRDWVLGTPK 264 (332)
Q Consensus 185 ~G~hg~~~v~~~s~~~v~~~~~~~p~~~~~~~~~~~~~~~~~~v~~~~~~i~~~~g~~~~~~~a~a~~~~i~~~~~~~~~ 264 (332)
|||||++++|+||+++++.+.+|+|+.+++.+++|+++++.+++++++++|++.+++++++++|+++++++.+++.+.|+
T Consensus 162 lGeHG~s~v~~~S~a~v~~~~~g~p~~e~~~~~~~~~~~i~~~v~~~g~~Ii~~~kg~t~~~ia~a~~~iv~ai~~~~~~ 241 (309)
T PLN00135 162 WGNHSSTQYPDVNHATVKTPSGEKPVRELVADDAWLNGEFITTVQQRGAAIIKARKLSSALSAASSACDHIRDWVLGTPE 241 (309)
T ss_pred EEcCCCceeeccccceEecCCCCcCHHHHhCchhhHHHHHHHHHHHHHHHHHHccCccHHHHHHHHHHHHHHHHHhCCcC
Confidence 99999999999999999655579999998766667788999999999999999854466778899999999988885456
Q ss_pred CcEEEEEEeecCCCCCCCCeEEEEeEEEe-CCeEEEecCCCCCHHHHHHHHHHHHHHHHHHHHHhhhh
Q 019990 265 GTWVSMGVYSDGSYGIPEGLIYSFPVTCE-KGEWSIVKGLKVDEFSRAKMDATAEELAEEKTLAYSCL 331 (332)
Q Consensus 265 ~~i~~~~v~~~g~yg~~~~~~~s~Pv~~~-~G~~~~~~~~~l~~~E~~~l~~s~~~i~~~~~~~~~~~ 331 (332)
++|+|+|++++|+||+|+++|||+||+++ +|+.+++ +++|+++|+++|++|++.|+++.+.++.+|
T Consensus 242 ~~v~~vsv~~~g~YGi~~~v~~s~P~vlg~~gve~v~-~l~L~~~E~~~l~~S~~~lk~~~~~~~~~~ 308 (309)
T PLN00135 242 GTWVSMGVYSDGSYGVPPGLIYSFPVTCEKGEWSIVQ-GLSIDEFSRKKMDATAKELKEEKELAYSCL 308 (309)
T ss_pred CeEEEEEEEecCccCCcCCeEEEEEEEEECCEEEEec-CCCCCHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 89999999999999998899999999999 5555555 599999999999999999999999998877
|
|
| >PLN02602 lactate dehydrogenase | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-59 Score=434.74 Aligned_cols=302 Identities=22% Similarity=0.357 Sum_probs=266.3
Q ss_pred cEEEEEcCCChhHHHHHHHHHhcccCCCCCCeEEEEEecccchhhhhhhHhhhhhhccCCc-cceEEeCCHHHHhCCCcE
Q 019990 6 LRVLVTGAAGQIGYALVPMIARGIMLGPDQPVILHMLDIEPAAEALNGVKMELIDAAFPLL-KGVVATTDVVEACKDVNI 84 (332)
Q Consensus 6 ~kI~VtGaaG~IGs~l~~~L~~~~~~~~~~~~~i~l~D~~~~~~~~~~~~~dl~~~~~~~~-~~v~~~~~~~~a~~~aDi 84 (332)
+||+|+| +|.||+++++.|+..++++ +++|+|++. +++.|.++||.|+..... ..+....+ +++++|||+
T Consensus 38 ~KI~IIG-aG~VG~~~a~~l~~~~l~~-----el~LiDi~~--~~~~g~a~DL~~~~~~~~~~~i~~~~d-y~~~~daDi 108 (350)
T PLN02602 38 TKVSVVG-VGNVGMAIAQTILTQDLAD-----ELALVDVNP--DKLRGEMLDLQHAAAFLPRTKILASTD-YAVTAGSDL 108 (350)
T ss_pred CEEEEEC-CCHHHHHHHHHHHhCCCCC-----EEEEEeCCC--chhhHHHHHHHhhhhcCCCCEEEeCCC-HHHhCCCCE
Confidence 6999999 5999999999999888865 999999964 578999999999863222 34443334 567999999
Q ss_pred EEEecCCCCCCCCChhHHHhhhHHHHHHHHHHHHhhcCCCcEEEEEeCChhhHHHHHHHHCCCCCCCcE-EEeecccHHH
Q 019990 85 AVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEKHAAPNCKVLVVANPANTNALILKEFAPSIPAKNI-TCLTRLDHNR 163 (332)
Q Consensus 85 Vi~~ag~~~~~~~~~~~~~~~N~~~~~~i~~~i~~~~~~~~~viv~snp~~~~~~~~~~~~~~~~~~~i-~~~t~l~~~r 163 (332)
||++||.++++|++|.+++..|+++++++++.+++++ |+++++++|||+|+++++++++ +++|++|+ +.+|.||+.|
T Consensus 109 VVitAG~~~k~g~tR~dll~~N~~I~~~i~~~I~~~~-p~~ivivvtNPvdv~t~~~~k~-sg~p~~rviG~gt~LDs~R 186 (350)
T PLN02602 109 CIVTAGARQIPGESRLNLLQRNVALFRKIIPELAKYS-PDTILLIVSNPVDVLTYVAWKL-SGFPANRVIGSGTNLDSSR 186 (350)
T ss_pred EEECCCCCCCcCCCHHHHHHHHHHHHHHHHHHHHHHC-CCeEEEEecCchHHHHHHHHHH-hCCCHHHEEeecchHHHHH
Confidence 9999999999999999999999999999999999998 8999999999999999999998 68999996 5558999999
Q ss_pred HHHHHHHHcCCCCCCeeeeEEEecCCCceeecccCcccccCCCCcchhhhcccc--cc---chhHHHHHHHhhHHHHHHh
Q 019990 164 AMGQISERLKVHVSDVKNVIIWGNHSSTQYPDVNHATVTTSKGEKPVREAVADD--NW---LNTEFITTVQQRGAAIIKA 238 (332)
Q Consensus 164 ~~~~~a~~~~v~~~~v~~~~V~G~hg~~~v~~~s~~~v~~~~~~~p~~~~~~~~--~~---~~~~~~~~v~~~~~~i~~~ 238 (332)
+++++|+++|+++++|+++ ||||||++++|+||++++ +|+|+.+++.+. .+ ..+++.+++++++++|++.
T Consensus 187 ~r~~lA~~l~v~~~~V~~~-ViGeHGds~vp~wS~~~i----~G~pl~~~~~~~~~~~~~~~~~~i~~~v~~~g~eIi~~ 261 (350)
T PLN02602 187 FRFLIADHLDVNAQDVQAY-IVGEHGDSSVALWSSVSV----GGVPVLSFLEKQQIAYEKETLEEIHRAVVDSAYEVIKL 261 (350)
T ss_pred HHHHHHHHhCCCccceeee-EEecCCCceEeeeeeeeE----CCEEHHHHhhccCCccCHHHHHHHHHHHHHHHHHHHhc
Confidence 9999999999999999997 689999999999999999 999999986541 11 1468999999999999999
Q ss_pred cCCcchHHHHHHHHHHHHHHHcCCCCCcEEEEEEeecCCCCCC-CCeEEEEeEEEe-CCeEEEecCCCCCHHHHHHHHHH
Q 019990 239 RKLSSALSAASSACDHIRDWVLGTPKGTWVSMGVYSDGSYGIP-EGLIYSFPVTCE-KGEWSIVKGLKVDEFSRAKMDAT 316 (332)
Q Consensus 239 ~g~~~~~~~a~a~~~~i~~~~~~~~~~~i~~~~v~~~g~yg~~-~~~~~s~Pv~~~-~G~~~~~~~~~l~~~E~~~l~~s 316 (332)
||.|+ +++|+++++++.+++. |+++++|+|++++|+||++ +++|||+||++| +|++++++ ++||++|+++|++|
T Consensus 262 KG~t~-~gia~a~a~ii~ail~--d~~~v~~vsv~~~g~Yg~~~~~v~~s~P~~ig~~Gi~~i~~-l~L~~~E~~~l~~s 337 (350)
T PLN02602 262 KGYTS-WAIGYSVASLVRSLLR--DQRRIHPVSVLAKGFHGIDEGDVFLSLPAQLGRNGVLGVVN-VHLTDEEAERLRKS 337 (350)
T ss_pred CCccH-HHHHHHHHHHHHHHHh--cCCCeEEEEEecccccCCCCCCcEEEEEEEEeCCeeEEEec-CCCCHHHHHHHHHH
Confidence 99766 5668999988877665 4689999999999999993 799999999999 99999995 99999999999999
Q ss_pred HHHHHHHHHHH
Q 019990 317 AEELAEEKTLA 327 (332)
Q Consensus 317 ~~~i~~~~~~~ 327 (332)
++.|++.++..
T Consensus 338 a~~l~~~~~~~ 348 (350)
T PLN02602 338 AKTLWEVQSQL 348 (350)
T ss_pred HHHHHHHHHHh
Confidence 99999887754
|
|
| >KOG1495 consensus Lactate dehydrogenase [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.4e-60 Score=404.98 Aligned_cols=299 Identities=26% Similarity=0.377 Sum_probs=269.5
Q ss_pred CcEEEEEcCCChhHHHHHHHHHhcccCCCCCCeEEEEEecccchhhhhhhHhhhhhhccCC-ccceEEeCCHHHHhCCCc
Q 019990 5 PLRVLVTGAAGQIGYALVPMIARGIMLGPDQPVILHMLDIEPAAEALNGVKMELIDAAFPL-LKGVVATTDVVEACKDVN 83 (332)
Q Consensus 5 ~~kI~VtGaaG~IGs~l~~~L~~~~~~~~~~~~~i~l~D~~~~~~~~~~~~~dl~~~~~~~-~~~v~~~~~~~~a~~~aD 83 (332)
..||.|+| +|.+|.+++..++.+++.+ |++|+|.++ ++++|..|||+|..... ..++....| +.+.++++
T Consensus 20 ~~KItVVG-~G~VGmAca~siL~k~Lad-----el~lvDv~~--dklkGE~MDLqH~s~f~~~~~V~~~~D-y~~sa~S~ 90 (332)
T KOG1495|consen 20 HNKITVVG-VGQVGMACAISILLKGLAD-----ELVLVDVNE--DKLKGEMMDLQHGSAFLSTPNVVASKD-YSVSANSK 90 (332)
T ss_pred CceEEEEc-cchHHHHHHHHHHHhhhhh-----ceEEEecCc--chhhhhhhhhccccccccCCceEecCc-ccccCCCc
Confidence 46999999 6999999999999999875 999999975 58999999999975333 356666656 56789999
Q ss_pred EEEEecCCCCCCCCChhHHHhhhHHHHHHHHHHHHhhcCCCcEEEEEeCChhhHHHHHHHHCCCCCCCc-EEEeecccHH
Q 019990 84 IAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEKHAAPNCKVLVVANPANTNALILKEFAPSIPAKN-ITCLTRLDHN 162 (332)
Q Consensus 84 iVi~~ag~~~~~~~~~~~~~~~N~~~~~~i~~~i~~~~~~~~~viv~snp~~~~~~~~~~~~~~~~~~~-i~~~t~l~~~ 162 (332)
+||+|||..+++|++|.+++++|+.+++.+...+.+|. |+++++++|||+|+|||+.|+. +++|.+| |+.||.||+.
T Consensus 91 lvIiTAGarq~~gesRL~lvQrNV~ifK~iip~lv~yS-pd~~llvvSNPVDilTYv~wKL-SgfP~nRViGsGcnLDsa 168 (332)
T KOG1495|consen 91 LVIITAGARQSEGESRLDLVQRNVDIFKAIIPALVKYS-PDCILLVVSNPVDILTYVTWKL-SGFPKNRVIGSGCNLDSA 168 (332)
T ss_pred EEEEecCCCCCCCcHHHHHHHHHHHHHHHHHHHHhhcC-CCeEEEEecCchHHHHHHHHHH-cCCcccceeccCcCccHH
Confidence 99999999999999999999999999999999999996 9999999999999999999998 8999998 7899999999
Q ss_pred HHHHHHHHHcCCCCCCeeeeEEEecCCCceeecccCcccccCCCCcchhhhccc-------cccchhHHHHHHHhhHHHH
Q 019990 163 RAMGQISERLKVHVSDVKNVIIWGNHSSTQYPDVNHATVTTSKGEKPVREAVAD-------DNWLNTEFITTVQQRGAAI 235 (332)
Q Consensus 163 r~~~~~a~~~~v~~~~v~~~~V~G~hg~~~v~~~s~~~v~~~~~~~p~~~~~~~-------~~~~~~~~~~~v~~~~~~i 235 (332)
||++++++++|++|+++++|+ +||||++.||.||.+.+ +|.|+.++..+ +.| +++.+++.+.+|||
T Consensus 169 RFryLi~~~Lg~~pss~hgwI-iGEHGdSsV~vWSgvni----AGv~l~~l~~~~~t~~d~e~w--~eihK~v~~sayev 241 (332)
T KOG1495|consen 169 RFRYLIGNRLGVHPSSCHGWI-IGEHGDSSVPVWSGVNI----AGVSLKDLNPDLGTDYDPENW--KEIHKQVVDSAYEV 241 (332)
T ss_pred HHHHHHHHHhCCCcccceEEE-eeccCCccceecccccc----cceEHhHhChhhcCCCCHHHH--HHHHHHHHHHHHHH
Confidence 999999999999999999996 79999999999999999 99999998754 246 58999999999999
Q ss_pred HHhcCCcchHHHHHHHHHHHHHHHcCCCCCcEEEEEEeecCCCCCCCCeEEEEeEEEe-CCeEEEecCCCCCHHHHHHHH
Q 019990 236 IKARKLSSALSAASSACDHIRDWVLGTPKGTWVSMGVYSDGSYGIPEGLIYSFPVTCE-KGEWSIVKGLKVDEFSRAKMD 314 (332)
Q Consensus 236 ~~~~g~~~~~~~a~a~~~~i~~~~~~~~~~~i~~~~v~~~g~yg~~~~~~~s~Pv~~~-~G~~~~~~~~~l~~~E~~~l~ 314 (332)
++.||+|+|.. +.+.++++.+.+. +.++++|+|+..+|.|||.+++|||+||+++ +|+..+++ .+|+++|+++|+
T Consensus 242 iklKGyTswaI-glsva~l~~ail~--n~~~i~~Vst~~kg~~gI~~dVflSlPc~l~~~Gi~~vv~-~~Lt~~E~akL~ 317 (332)
T KOG1495|consen 242 IKLKGYTSWAI-GLSVADLAQAILR--NLRRIHPVSTMVKGLYGIDDDVFLSLPCLLGANGITHVVK-QKLTDEEVAKLK 317 (332)
T ss_pred HHhcCchHHHH-HHHHHHHHHHHHh--CcCceeeeeeccccccCCCCceEEecceeecCCchhhhhc-ccCCHHHHHHHH
Confidence 99999998754 7888887766555 4589999999999999998899999999999 99999995 999999999999
Q ss_pred HHHHHHHHHHH
Q 019990 315 ATAEELAEEKT 325 (332)
Q Consensus 315 ~s~~~i~~~~~ 325 (332)
+|++.|.+..+
T Consensus 318 kSa~tl~~~q~ 328 (332)
T KOG1495|consen 318 KSAKTLLEAQK 328 (332)
T ss_pred HHHHHHHHHHH
Confidence 99999976543
|
|
| >KOG1496 consensus Malate dehydrogenase [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-60 Score=401.08 Aligned_cols=330 Identities=74% Similarity=1.161 Sum_probs=318.1
Q ss_pred CCCcEEEEEcCCChhHHHHHHHHHhcccCCCCCCeEEEEEecccchhhhhhhHhhhhhhccCCccceEEeCCHHHHhCCC
Q 019990 3 KNPLRVLVTGAAGQIGYALVPMIARGIMLGPDQPVILHMLDIEPAAEALNGVKMELIDAAFPLLKGVVATTDVVEACKDV 82 (332)
Q Consensus 3 ~~~~kI~VtGaaG~IGs~l~~~L~~~~~~~~~~~~~i~l~D~~~~~~~~~~~~~dl~~~~~~~~~~v~~~~~~~~a~~~a 82 (332)
+.+.+|+||||+|.||+++++.+.++.++|++++..++|+|+......++|..++|+|+.+|+...+..+++..++|+|.
T Consensus 2 ~epirVlVtGAAGqI~ysll~~ia~G~vfG~dQPiiL~lLdi~~~~~~LegV~mELqD~a~PlL~~Vvattd~~~afkdv 81 (332)
T KOG1496|consen 2 KEPIRVLVTGAAGQIGYSLLPMIARGIVFGKDQPIILHLLDIPPMMSVLEGVKMELQDCALPLLKGVVATTDEVEAFKDV 81 (332)
T ss_pred CCceEEEeecccchhhHHHHHHHcCceeecCCCceEEEeeCCchHHHHHHHHHHHHHhhhhhHHHhhhcccChhhhhccC
Confidence 57889999999999999999999999999999999999999987777889999999999999988888888889999999
Q ss_pred cEEEEecCCCCCCCCChhHHHhhhHHHHHHHHHHHHhhcCCCcEEEEEeCChhhHHHHHHHHCCCCCCCcEEEeecccHH
Q 019990 83 NIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEKHAAPNCKVLVVANPANTNALILKEFAPSIPAKNITCLTRLDHN 162 (332)
Q Consensus 83 DiVi~~ag~~~~~~~~~~~~~~~N~~~~~~i~~~i~~~~~~~~~viv~snp~~~~~~~~~~~~~~~~~~~i~~~t~l~~~ 162 (332)
|+.|..++.||.+|++|.|++..|+.+++.-..++.+|++|++++++++||++..+.++.++++++|.++|.++|.||..
T Consensus 82 ~~ailvGa~PR~eGMERkDll~~NvkIfk~Qg~AL~k~A~~~~KVlVVgNPaNTNali~~k~ApsIP~kNfs~lTRLDhN 161 (332)
T KOG1496|consen 82 DVAILVGAMPRREGMERKDLLSANVKIFKSQGAALEKYAKPNVKVLVVGNPANTNALILKKFAPSIPEKNFSALTRLDHN 161 (332)
T ss_pred cEEEEeccccCcccchhhhHHhhcceeehhhhHHHHHhcCCCceEEEecCccccchhHHhhhCCCCchhcchhhhhhchh
Confidence 99999999999999999999999999999999999999989999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHcCCCCCCeeeeEEEecCCCceeecccCcccccCCCCcchhhhccccccchhHHHHHHHhhHHHHHHhcCCc
Q 019990 163 RAMGQISERLKVHVSDVKNVIIWGNHSSTQYPDVNHATVTTSKGEKPVREAVADDNWLNTEFITTVQQRGAAIIKARKLS 242 (332)
Q Consensus 163 r~~~~~a~~~~v~~~~v~~~~V~G~hg~~~v~~~s~~~v~~~~~~~p~~~~~~~~~~~~~~~~~~v~~~~~~i~~~~g~~ 242 (332)
|...++|.++|++.++|.++++||+|+.+|+|++.+++++.+.+.+|+.+.+.|+.|+..+|.+.||++|..+++.++.+
T Consensus 162 RA~~QlA~klgv~~~~VkNviIWGNHSsTQyPD~~hA~V~~~~~~~~v~e~v~d~~wL~g~Fi~tVQkRGaavi~ark~S 241 (332)
T KOG1496|consen 162 RALAQLALKLGVPVSDVKNVIIWGNHSSTQYPDVNHATVNTNGGEKPVKEAVKDDAWLQGEFIETVQKRGAAVIKARKLS 241 (332)
T ss_pred hHHHHHHHhhCCchhhcceeEEecccccccCCCccceeeeccCCcccHHHHhccchhhccchhhHHHhcchHhhhhhhhh
Confidence 99999999999999999999999999999999999999988777899999999999999999999999999999999999
Q ss_pred chHHHHHHHHHHHHHHHcCCCCCcEEEEEEeecCCCCCCCCeEEEEeEEEeCCeEEEecCCCCCHHHHHHHHHHHHHHHH
Q 019990 243 SALSAASSACDHIRDWVLGTPKGTWVSMGVYSDGSYGIPEGLIYSFPVTCEKGEWSIVKGLKVDEFSRAKMDATAEELAE 322 (332)
Q Consensus 243 ~~~~~a~a~~~~i~~~~~~~~~~~i~~~~v~~~g~yg~~~~~~~s~Pv~~~~G~~~~~~~~~l~~~E~~~l~~s~~~i~~ 322 (332)
|.+|.|-+++++|++|+.+.++|.+++++|+++|.||+|.|..||+||++.+|.|+++++++++++-++++..++.+|++
T Consensus 242 SA~SaA~aacDhi~dw~~gTpeG~fvSmgV~sDGsYgip~gli~SfPv~~k~g~wkiVqgl~iddf~r~km~~t~~EL~e 321 (332)
T KOG1496|consen 242 SAMSAAKAACDHIRDWWFGTPEGTFVSMGVYSDGSYGIPDGLIFSFPVTIKNGDWKIVQGLPIDDFSREKMDLTAKELKE 321 (332)
T ss_pred hhhhHHHhHhhhhhheecCCCCccEEEEeeecCCCCCCCCCeEEEcceEecCCceEEEcCcchhHHHHHhhhhhHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhhhhC
Q 019990 323 EKTLAYSCLN 332 (332)
Q Consensus 323 ~~~~~~~~~~ 332 (332)
+.+.++.+|+
T Consensus 322 Ekd~a~~~l~ 331 (332)
T KOG1496|consen 322 EKDLAYSCLS 331 (332)
T ss_pred hHHHHHHhhc
Confidence 9999999885
|
|
| >cd05293 LDH_1 A subgroup of L-lactate dehydrogenases | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.3e-59 Score=427.05 Aligned_cols=302 Identities=25% Similarity=0.316 Sum_probs=266.6
Q ss_pred CCcEEEEEcCCChhHHHHHHHHHhcccCCCCCCeEEEEEecccchhhhhhhHhhhhhhccCC-ccceEEeCCHHHHhCCC
Q 019990 4 NPLRVLVTGAAGQIGYALVPMIARGIMLGPDQPVILHMLDIEPAAEALNGVKMELIDAAFPL-LKGVVATTDVVEACKDV 82 (332)
Q Consensus 4 ~~~kI~VtGaaG~IGs~l~~~L~~~~~~~~~~~~~i~l~D~~~~~~~~~~~~~dl~~~~~~~-~~~v~~~~~~~~a~~~a 82 (332)
..+||+|+| +|+||+++++.|+..+++. +++|+|++. +++.|.++||.|+.... ...+....+ +++++||
T Consensus 2 ~~~Ki~IiG-aG~VG~~~a~~l~~~~~~~-----el~LiD~~~--~~~~g~a~Dl~~~~~~~~~~~v~~~~d-y~~~~~a 72 (312)
T cd05293 2 PRNKVTVVG-VGQVGMACAISILAKGLAD-----ELVLVDVVE--DKLKGEAMDLQHGSAFLKNPKIEADKD-YSVTANS 72 (312)
T ss_pred CCCEEEEEC-CCHHHHHHHHHHHhcCCCC-----EEEEEeCCc--cHHHHHHHHHHHhhccCCCCEEEECCC-HHHhCCC
Confidence 346999999 5999999999999888764 999999965 57899999999986222 234554455 5679999
Q ss_pred cEEEEecCCCCCCCCChhHHHhhhHHHHHHHHHHHHhhcCCCcEEEEEeCChhhHHHHHHHHCCCCCCCcE-EEeecccH
Q 019990 83 NIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEKHAAPNCKVLVVANPANTNALILKEFAPSIPAKNI-TCLTRLDH 161 (332)
Q Consensus 83 DiVi~~ag~~~~~~~~~~~~~~~N~~~~~~i~~~i~~~~~~~~~viv~snp~~~~~~~~~~~~~~~~~~~i-~~~t~l~~ 161 (332)
|+||++||.+++++++|.+++..|+++++++++.+++++ |+++++++|||+|.++++++++ +++|++++ +.+|.+|+
T Consensus 73 divvitaG~~~k~g~~R~dll~~N~~i~~~~~~~i~~~~-p~~~vivvsNP~d~~t~~~~k~-sg~p~~~viG~gt~Ld~ 150 (312)
T cd05293 73 KVVIVTAGARQNEGESRLDLVQRNVDIFKGIIPKLVKYS-PNAILLVVSNPVDIMTYVAWKL-SGLPKHRVIGSGCNLDS 150 (312)
T ss_pred CEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhC-CCcEEEEccChHHHHHHHHHHH-hCCCHHHEEecCchHHH
Confidence 999999999999999999999999999999999999997 8999999999999999999998 79999995 55599999
Q ss_pred HHHHHHHHHHcCCCCCCeeeeEEEecCCCceeecccCcccccCCCCcchhhhccc-----cccchhHHHHHHHhhHHHHH
Q 019990 162 NRAMGQISERLKVHVSDVKNVIIWGNHSSTQYPDVNHATVTTSKGEKPVREAVAD-----DNWLNTEFITTVQQRGAAII 236 (332)
Q Consensus 162 ~r~~~~~a~~~~v~~~~v~~~~V~G~hg~~~v~~~s~~~v~~~~~~~p~~~~~~~-----~~~~~~~~~~~v~~~~~~i~ 236 (332)
.|+++++|+++++++.+|+.+ |||+||++++|+||++++ +|+|+.+++.. +.-..+++.+++++++++|+
T Consensus 151 ~R~~~~la~~l~v~~~~v~~~-v~GeHG~s~vp~~S~~~i----~g~~l~~~~~~~~~~~~~~~~~~i~~~v~~~g~~Ii 225 (312)
T cd05293 151 ARFRYLIAERLGVAPSSVHGW-IIGEHGDSSVPVWSGVNV----AGVRLQDLNPDIGTDKDPEKWKEVHKQVVDSAYEVI 225 (312)
T ss_pred HHHHHHHHHHhCCChhhEEEE-EeecCCCCccccceeceE----CCEEHHHHhhhccccccHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999987 589999999999999999 99999998632 11124789999999999999
Q ss_pred HhcCCcchHHHHHHHHHHHHHHHcCCCCCcEEEEEEeecCCCCCCCCeEEEEeEEEe-CCeEEEecCCCCCHHHHHHHHH
Q 019990 237 KARKLSSALSAASSACDHIRDWVLGTPKGTWVSMGVYSDGSYGIPEGLIYSFPVTCE-KGEWSIVKGLKVDEFSRAKMDA 315 (332)
Q Consensus 237 ~~~g~~~~~~~a~a~~~~i~~~~~~~~~~~i~~~~v~~~g~yg~~~~~~~s~Pv~~~-~G~~~~~~~~~l~~~E~~~l~~ 315 (332)
+.||.|+| ++|+++++++.+++. ++++++|++++.+|+||++.++|||+||++| +|++++++ ++||++|+++|++
T Consensus 226 ~~kg~t~~-~~a~a~~~ii~ail~--d~~~~~~vsv~~~g~yg~~~d~~~svP~~ig~~Gi~~i~~-l~L~~~E~~~l~~ 301 (312)
T cd05293 226 KLKGYTSW-AIGLSVADLVDAILR--NTGRVHSVSTLVKGLHGIEDEVFLSLPCILGENGITHVIK-QPLTEEEQEKLQK 301 (312)
T ss_pred HhcCCchH-HHHHHHHHHHHHHHc--CCCeEEEEEEEeCCccCCCCCeEEEEeEEEeCCceEEEec-CCCCHHHHHHHHH
Confidence 99997765 568999998887775 3579999999999999998899999999999 99999995 9999999999999
Q ss_pred HHHHHHHHHH
Q 019990 316 TAEELAEEKT 325 (332)
Q Consensus 316 s~~~i~~~~~ 325 (332)
|++.|++.++
T Consensus 302 s~~~i~~~~~ 311 (312)
T cd05293 302 SADTLWEVQK 311 (312)
T ss_pred HHHHHHHHhh
Confidence 9999998765
|
L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed of eukaryotic LDHs. Vertebrate LDHs are non-allosteric. This is in contrast to some bacterial LDHs that are activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others. |
| >TIGR01756 LDH_protist lactate dehydrogenase | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-59 Score=427.16 Aligned_cols=304 Identities=37% Similarity=0.653 Sum_probs=266.7
Q ss_pred HHHHhcccCCCCCCeEEEEEecccchhhhhhhHhhhhhhccCCccceEEeCCHHHHhCCCcEEEEecCCCCCCCCChhHH
Q 019990 23 PMIARGIMLGPDQPVILHMLDIEPAAEALNGVKMELIDAAFPLLKGVVATTDVVEACKDVNIAVMVGGFPRKEGMERKDV 102 (332)
Q Consensus 23 ~~L~~~~~~~~~~~~~i~l~D~~~~~~~~~~~~~dl~~~~~~~~~~v~~~~~~~~a~~~aDiVi~~ag~~~~~~~~~~~~ 102 (332)
..|.++.++| +.+..++|+|++++.++++|.++|+.|+.++.........+.+++++|||+||++||.|+++|++|.++
T Consensus 3 ~~~~~g~~~g-~~~~~l~L~D~~~~~~~a~g~a~Dl~d~~~~~~~~~i~~~~~~~~~~daDiVVitaG~~~k~g~tR~dl 81 (313)
T TIGR01756 3 HWIANGDLYG-NRPVCLHLLEIPPALNRLEALAMELEDCAFPNLAGTIVTTKLEEAFKDIDCAFLVASVPLKPGEVRADL 81 (313)
T ss_pred ceeccCcccC-CCeEEEEEecCCCccchhHhHHHHHHHhccccCCceEecCCHHHHhCCCCEEEECCCCCCCcCCCHHHH
Confidence 3455667788 777899999998766789999999999874433223335676689999999999999999999999999
Q ss_pred HhhhHHHHHHHHHHHHhhcCCCcEEEEEeCChhhHHHHH-HHHCCCCCCCcEEEeecccHHHHHHHHHHHcCCCCCCeee
Q 019990 103 MSKNVSIYKAQASALEKHAAPNCKVLVVANPANTNALIL-KEFAPSIPAKNITCLTRLDHNRAMGQISERLKVHVSDVKN 181 (332)
Q Consensus 103 ~~~N~~~~~~i~~~i~~~~~~~~~viv~snp~~~~~~~~-~~~~~~~~~~~i~~~t~l~~~r~~~~~a~~~~v~~~~v~~ 181 (332)
+..|+++++++++.+.+++++++++|++|||+|+|++++ ++. +++|++.|+++|.||+.|+++++|++++++|++|+.
T Consensus 82 l~~N~~I~~~i~~~i~~~a~~~~ivivvtNPvDv~t~v~~~~~-sg~p~~vig~gt~LDsaR~r~~la~~l~v~~~~V~~ 160 (313)
T TIGR01756 82 LTKNTPIFKATGEALSEYAKPTVKVLVIGNPVNTNCLVAMLHA-PKLSAENFSSLCMLDHNRAVSRIASKLKVPVDHIYH 160 (313)
T ss_pred HHHHHHHHHHHHHHHHhhCCCCeEEEEeCCchHHHHHHHHHHc-CCCCHHHEEecccHHHHHHHHHHHHHhCcChhheee
Confidence 999999999999999999855688999999999999999 465 899988889999999999999999999999999987
Q ss_pred eEEEecCCCceeecccCcccccCCCCcchhhh--ccccccchhHHHHHHHhhHHHHHHhcCCcchHHHHHHHHHHHHHHH
Q 019990 182 VIIWGNHSSTQYPDVNHATVTTSKGEKPVREA--VADDNWLNTEFITTVQQRGAAIIKARKLSSALSAASSACDHIRDWV 259 (332)
Q Consensus 182 ~~V~G~hg~~~v~~~s~~~v~~~~~~~p~~~~--~~~~~~~~~~~~~~v~~~~~~i~~~~g~~~~~~~a~a~~~~i~~~~ 259 (332)
++||||||++++|+||+++++. +|+|+..+ +. ++|.++++.+++++++++|++.||+|++.++|.++++++++|+
T Consensus 161 ~~V~GeHG~s~vp~~S~~~V~~--~G~~~~~~~~~~-~~~~~~~i~~~v~~~g~~Ii~~kg~t~~~~~a~ai~~iv~ail 237 (313)
T TIGR01756 161 VVVWGNHAESMVADLTHAEFTK--NGKHQKVFDELC-RDYPEPDFFEVIAQRAWKILEMRGFTSAASPVKASLQHMKAWL 237 (313)
T ss_pred eEEEECCCCceeecccccEEec--CCeehhHhhhcC-cHhHHHHHHHHHHHHHHHHHhCcCCcchHHHHHHHHHHHHHHh
Confidence 7789999999999999999842 67786544 42 2466789999999999999999998888877789999999998
Q ss_pred cCCCCCcEEEEEEeec--CCCCCCCCeEEEEeEEEe-CCeEEEecCCCCCHHHHHHHHHHHHHHHHHHHHHhhhh
Q 019990 260 LGTPKGTWVSMGVYSD--GSYGIPEGLIYSFPVTCE-KGEWSIVKGLKVDEFSRAKMDATAEELAEEKTLAYSCL 331 (332)
Q Consensus 260 ~~~~~~~i~~~~v~~~--g~yg~~~~~~~s~Pv~~~-~G~~~~~~~~~l~~~E~~~l~~s~~~i~~~~~~~~~~~ 331 (332)
.+.++++|+|+|++++ |+||+++|+|||+||++| +|+++++++++|+++|+++|++|++.|+++.+.++..|
T Consensus 238 ~~~~~~~i~pvsv~l~~~g~YGi~~~v~~s~P~vig~~Gv~~ive~l~L~~~E~~~l~~Sa~~l~~e~~~~~~~~ 312 (313)
T TIGR01756 238 FGTRPGEVLSMGIPVPEGNPYGIKPGVIFSFPCTVDEDGKVHVVENFELNPWLKTKLAQTEKDLFEERETALKAL 312 (313)
T ss_pred cCCCCCeEEEEEEEecCCCccCCCCCEEEEEEEEEeCCceEEEcCCCCCCHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 8766789999999985 399998899999999999 99999996699999999999999999999999987765
|
This model represents a family of protist lactate dehydrogenases which have aparrently evolved from a recent protist malate dehydrogenase ancestor. Lactate dehydrogenase converts the hydroxyl at C-2 of lactate to a carbonyl in the product, pyruvate. The preference of this enzyme for NAD or NADP has not been determined. A critical residue in malate dehydrogenase, arginine-91 (T. vaginalis numbering) has been mutated to a leucine, eliminating the positive charge which complemeted the carboxylate in malate which is absent in lactate. Several other more subtle changes are proposed to make the active site smaller to accomadate the less bulky lactate molecule. |
| >cd05291 HicDH_like L-2-hydroxyisocapronate dehydrogenases and some bacterial L-lactate dehydrogenases | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.2e-58 Score=422.78 Aligned_cols=300 Identities=23% Similarity=0.384 Sum_probs=265.7
Q ss_pred cEEEEEcCCChhHHHHHHHHHhcccCCCCCCeEEEEEecccchhhhhhhHhhhhhhccCCccceEEeCCHHHHhCCCcEE
Q 019990 6 LRVLVTGAAGQIGYALVPMIARGIMLGPDQPVILHMLDIEPAAEALNGVKMELIDAAFPLLKGVVATTDVVEACKDVNIA 85 (332)
Q Consensus 6 ~kI~VtGaaG~IGs~l~~~L~~~~~~~~~~~~~i~l~D~~~~~~~~~~~~~dl~~~~~~~~~~v~~~~~~~~a~~~aDiV 85 (332)
+||+|+| +|.+|++++..|+..+... +|.++|++. +++++..+|+.|...+.........+.++++++||+|
T Consensus 1 ~kI~IIG-aG~vG~~~a~~l~~~g~~~-----ei~l~D~~~--~~~~~~a~dL~~~~~~~~~~~~i~~~~~~~l~~aDIV 72 (306)
T cd05291 1 RKVVIIG-AGHVGSSFAYSLVNQGIAD-----ELVLIDINE--EKAEGEALDLEDALAFLPSPVKIKAGDYSDCKDADIV 72 (306)
T ss_pred CEEEEEC-CCHHHHHHHHHHHhcCCCC-----EEEEEeCCc--chhhHhHhhHHHHhhccCCCeEEEcCCHHHhCCCCEE
Confidence 4899999 6999999999999888643 899999965 5688899999887543333333333445679999999
Q ss_pred EEecCCCCCCCCChhHHHhhhHHHHHHHHHHHHhhcCCCcEEEEEeCChhhHHHHHHHHCCCCCCCc-EEEeecccHHHH
Q 019990 86 VMVGGFPRKEGMERKDVMSKNVSIYKAQASALEKHAAPNCKVLVVANPANTNALILKEFAPSIPAKN-ITCLTRLDHNRA 164 (332)
Q Consensus 86 i~~ag~~~~~~~~~~~~~~~N~~~~~~i~~~i~~~~~~~~~viv~snp~~~~~~~~~~~~~~~~~~~-i~~~t~l~~~r~ 164 (332)
|+++|.|++++++|.+++..|+++++++++.+++++ |+++++++|||+|.++++++++ +++|+++ |+.+|.||+.|+
T Consensus 73 Iitag~~~~~g~~R~dll~~N~~i~~~~~~~i~~~~-~~~~vivvsNP~d~~~~~~~~~-~g~p~~~v~g~gt~LDs~R~ 150 (306)
T cd05291 73 VITAGAPQKPGETRLDLLEKNAKIMKSIVPKIKASG-FDGIFLVASNPVDVITYVVQKL-SGLPKNRVIGTGTSLDTARL 150 (306)
T ss_pred EEccCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhC-CCeEEEEecChHHHHHHHHHHH-hCcCHHHEeeccchHHHHHH
Confidence 999999999999999999999999999999999998 8999999999999999999998 8999999 566699999999
Q ss_pred HHHHHHHcCCCCCCeeeeEEEecCCCceeecccCcccccCCCCcchhhhccccccc---hhHHHHHHHhhHHHHHHhcCC
Q 019990 165 MGQISERLKVHVSDVKNVIIWGNHSSTQYPDVNHATVTTSKGEKPVREAVADDNWL---NTEFITTVQQRGAAIIKARKL 241 (332)
Q Consensus 165 ~~~~a~~~~v~~~~v~~~~V~G~hg~~~v~~~s~~~v~~~~~~~p~~~~~~~~~~~---~~~~~~~v~~~~~~i~~~~g~ 241 (332)
++++|+++++++.+|+++ |||+||++++|+||++++ +|+|+.+++.+..|. ++++.+++++++++|++.||+
T Consensus 151 ~~~la~~l~v~~~~v~~~-V~G~Hg~s~~~~~S~~~v----~g~~~~~~~~~~~~~~~~~~~~~~~v~~~g~~ii~~kg~ 225 (306)
T cd05291 151 RRALAEKLNVDPRSVHAY-VLGEHGDSQFVAWSTVTV----GGKPLLDLLKEGKLSELDLDEIEEDVRKAGYEIINGKGA 225 (306)
T ss_pred HHHHHHHHCCCcccceEE-EEecCCCceeecceeeEE----cCEEHHHHhhccccChHHHHHHHHHHHHHHHHHHHccCc
Confidence 999999999999999996 799999999999999999 999999988765553 578999999999999999997
Q ss_pred cchHHHHHHHHHHHHHHHcCCCCCcEEEEEEeecCCCCCCCCeEEEEeEEEe-CCeEEEecCCCCCHHHHHHHHHHHHHH
Q 019990 242 SSALSAASSACDHIRDWVLGTPKGTWVSMGVYSDGSYGIPEGLIYSFPVTCE-KGEWSIVKGLKVDEFSRAKMDATAEEL 320 (332)
Q Consensus 242 ~~~~~~a~a~~~~i~~~~~~~~~~~i~~~~v~~~g~yg~~~~~~~s~Pv~~~-~G~~~~~~~~~l~~~E~~~l~~s~~~i 320 (332)
|++ ++|.++++++.+++. ++++++|+|++++|+||. +++|||+||+++ +|++++++ ++|+++|+++|++|+++|
T Consensus 226 t~~-~~a~a~~~~~~ail~--~~~~v~~~s~~~~g~yg~-~~v~~s~P~~ig~~Gv~~i~~-~~l~~~E~~~l~~s~~~l 300 (306)
T cd05291 226 TYY-GIATALARIVKAILN--DENAILPVSAYLDGEYGE-KDVYIGVPAIIGRNGVEEVIE-LDLTEEEQEKFEKSADII 300 (306)
T ss_pred cHH-HHHHHHHHHHHHHHc--CCCEEEEEEEEeccccCC-CCEEEEEEEEEeCCCEEEEEC-CCCCHHHHHHHHHHHHHH
Confidence 764 557899888888776 468999999999999995 899999999999 99999995 999999999999999999
Q ss_pred HHHHH
Q 019990 321 AEEKT 325 (332)
Q Consensus 321 ~~~~~ 325 (332)
++.++
T Consensus 301 ~~~~~ 305 (306)
T cd05291 301 KENIK 305 (306)
T ss_pred HHHhh
Confidence 98875
|
L-2-hydroxyisocapronate dehydrogenase (HicDH) catalyzes the conversion of a variety of 2-oxo carboxylic acids with medium-sized aliphatic or aromatic side chains. This subfamily is composed of HicDHs and some bacterial L-lactate dehydrogenases (LDH). LDHs catalyze the last step of glycolysis in which pyruvate is converted to L-lactate. Bacterial LDHs can be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. Members of this subfamily with known structures such as the HicDH of Lactobacillus confusus, the non-allosteric LDH of Lactobacillus pentosus, and the allosteric LDH of Bacillus stearothermophilus, show that they exist as homotetramers. The HicDH-like subfamily is part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine |
| >cd00300 LDH_like L-lactate dehydrogenase-like enzymes | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.9e-58 Score=418.72 Aligned_cols=296 Identities=25% Similarity=0.397 Sum_probs=266.7
Q ss_pred EEEEcCCChhHHHHHHHHHhcccCCCCCCeEEEEEecccchhhhhhhHhhhhhhccCCc-cceEEeCCHHHHhCCCcEEE
Q 019990 8 VLVTGAAGQIGYALVPMIARGIMLGPDQPVILHMLDIEPAAEALNGVKMELIDAAFPLL-KGVVATTDVVEACKDVNIAV 86 (332)
Q Consensus 8 I~VtGaaG~IGs~l~~~L~~~~~~~~~~~~~i~l~D~~~~~~~~~~~~~dl~~~~~~~~-~~v~~~~~~~~a~~~aDiVi 86 (332)
|+|+| +|.||+++++.|+..+++. +++|+|++. +++.+..+||.|...+.. ..+....+ ++++++||+||
T Consensus 1 i~iiG-aG~VG~~~a~~l~~~~~~~-----el~l~D~~~--~~~~g~~~DL~~~~~~~~~~~i~~~~~-~~~l~~aDiVI 71 (300)
T cd00300 1 ITIIG-AGNVGAAVAFALIAKGLAS-----ELVLVDVNE--EKAKGDALDLSHASAFLATGTIVRGGD-YADAADADIVV 71 (300)
T ss_pred CEEEC-CCHHHHHHHHHHHhcCCCC-----EEEEEeCCc--cHHHHHHHhHHHhccccCCCeEEECCC-HHHhCCCCEEE
Confidence 57999 6999999999999888764 899999964 578999999999865432 23333344 67899999999
Q ss_pred EecCCCCCCCCChhHHHhhhHHHHHHHHHHHHhhcCCCcEEEEEeCChhhHHHHHHHHCCCCCCCcEEEe-ecccHHHHH
Q 019990 87 MVGGFPRKEGMERKDVMSKNVSIYKAQASALEKHAAPNCKVLVVANPANTNALILKEFAPSIPAKNITCL-TRLDHNRAM 165 (332)
Q Consensus 87 ~~ag~~~~~~~~~~~~~~~N~~~~~~i~~~i~~~~~~~~~viv~snp~~~~~~~~~~~~~~~~~~~i~~~-t~l~~~r~~ 165 (332)
+++|.|++++++|.+++..|+++++++++.+++++ |+++++++|||+|.++++++++ +++|++|++|. |.+|+.|++
T Consensus 72 itag~p~~~~~~R~~l~~~n~~i~~~~~~~i~~~~-p~~~viv~sNP~d~~~~~~~~~-sg~~~~kviG~gt~lDs~r~~ 149 (300)
T cd00300 72 ITAGAPRKPGETRLDLINRNAPILRSVITNLKKYG-PDAIILVVSNPVDILTYVAQKL-SGLPKNRVIGSGTLLDSARFR 149 (300)
T ss_pred EcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhC-CCeEEEEccChHHHHHHHHHHH-hCcCHHHEEecCCcHHHHHHH
Confidence 99999999999999999999999999999999998 9999999999999999999998 78999996555 899999999
Q ss_pred HHHHHHcCCCCCCeeeeEEEecCCCceeecccCcccccCCCCcchhhhccccccchhHHHHHHHhhHHHHHHhcCCcchH
Q 019990 166 GQISERLKVHVSDVKNVIIWGNHSSTQYPDVNHATVTTSKGEKPVREAVADDNWLNTEFITTVQQRGAAIIKARKLSSAL 245 (332)
Q Consensus 166 ~~~a~~~~v~~~~v~~~~V~G~hg~~~v~~~s~~~v~~~~~~~p~~~~~~~~~~~~~~~~~~v~~~~~~i~~~~g~~~~~ 245 (332)
+++|+++++++.+|+++ |+|+||++++|+||++++ +|+|+.+++.+++|..+++.+++++++++|++.||+|+ +
T Consensus 150 ~~la~~l~v~~~~v~~~-viGeHg~s~v~~~S~~~v----~g~p~~~~~~~~~~~~~~l~~~v~~~~~~ii~~kg~t~-~ 223 (300)
T cd00300 150 SLLAEKLDVDPQSVHAY-VLGEHGDSQVVAWSTATV----GGLPLEELAPFTKLDLEAIEEEVRTSGYEIIRLKGATN-Y 223 (300)
T ss_pred HHHHHHhCCCcccEEEE-EEeccCCceeeeeeeeEE----CCEEHHHhhcccHHHHHHHHHHHHHHHHHHHHccCcch-H
Confidence 99999999999999997 589999999999999999 99999999877677889999999999999999999776 4
Q ss_pred HHHHHHHHHHHHHHcCCCCCcEEEEEEeecCCCCCCCCeEEEEeEEEe-CCeEEEecCCCCCHHHHHHHHHHHHHHHHHH
Q 019990 246 SAASSACDHIRDWVLGTPKGTWVSMGVYSDGSYGIPEGLIYSFPVTCE-KGEWSIVKGLKVDEFSRAKMDATAEELAEEK 324 (332)
Q Consensus 246 ~~a~a~~~~i~~~~~~~~~~~i~~~~v~~~g~yg~~~~~~~s~Pv~~~-~G~~~~~~~~~l~~~E~~~l~~s~~~i~~~~ 324 (332)
++|+++++++.+++.+ +++++|+|++++|+||. +++|||+||++| +|++++++ ++|+++|+++|++|++.|++.+
T Consensus 224 ~~a~a~~~~~~ai~~~--~~~v~~~s~~~~g~yg~-~~~~~s~Pv~ig~~Gi~~i~~-l~L~~~E~~~l~~s~~~l~~~~ 299 (300)
T cd00300 224 GIATAIADIVKSILLD--ERRVLPVSAVQEGQYGI-EDVALSVPAVVGREGVVRILE-IPLTEDEEAKLQKSAEALKEVL 299 (300)
T ss_pred HHHHHHHHHHHHHHcC--CCeEEEEEEEecCccCC-CCEEEEEEEEEeCCCeEEEec-CCCCHHHHHHHHHHHHHHHHHh
Confidence 6789999988887763 58999999999999995 899999999999 99999995 9999999999999999999875
|
Members of this subfamily are tetrameric NAD-dependent 2-hydroxycarboxylate dehydrogenases including LDHs, L-2-hydroxyisocaproate dehydrogenases (L-HicDH), and LDH-like malate dehydrogenases (MDH). Dehydrogenases catalyze the conversion of carbonyl compounds to alcohols or amino acids. LDHs catalyze the last step of glycolysis in which pyruvate is converted to L-lactate. Vertebrate LDHs are non-allosteric, but some bacterial LDHs are activated by an allosteric effector such as fructose-1,6-bisphosphate. L-HicDH catalyzes the conversion of a variety of 2-oxo carboxylic acids with medium-sized aliphatic or aromatic side chains. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH-like subfamily is part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of prot |
| >cd01337 MDH_glyoxysomal_mitochondrial Glyoxysomal and mitochondrial malate dehydrogenases | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.1e-57 Score=410.48 Aligned_cols=297 Identities=24% Similarity=0.342 Sum_probs=255.2
Q ss_pred cEEEEEcCCChhHHHHHHHHHhcccCCCCCCeEEEEEecccchhhhhhhHhhhhhhccCCccceEEe---CCHHHHhCCC
Q 019990 6 LRVLVTGAAGQIGYALVPMIARGIMLGPDQPVILHMLDIEPAAEALNGVKMELIDAAFPLLKGVVAT---TDVVEACKDV 82 (332)
Q Consensus 6 ~kI~VtGaaG~IGs~l~~~L~~~~~~~~~~~~~i~l~D~~~~~~~~~~~~~dl~~~~~~~~~~v~~~---~~~~~a~~~a 82 (332)
|||+|+||+|+||+++++.|+.++++. +++|+|++ ++.|.++||.|+.. ...+... ++++++++||
T Consensus 1 ~KI~IIGaaG~VG~~~a~~l~~~~~~~-----elvLiDi~----~a~g~alDL~~~~~--~~~i~~~~~~~~~y~~~~da 69 (310)
T cd01337 1 VKVAVLGAAGGIGQPLSLLLKLNPLVS-----ELALYDIV----NTPGVAADLSHINT--PAKVTGYLGPEELKKALKGA 69 (310)
T ss_pred CEEEEECCCCHHHHHHHHHHHhCCCCc-----EEEEEecC----ccceeehHhHhCCC--cceEEEecCCCchHHhcCCC
Confidence 589999977999999999999888764 99999995 57899999999752 1234432 3458999999
Q ss_pred cEEEEecCCCCCCCCChhHHHhhhHHHHHHHHHHHHhhcCCCcEEEEEeCChhhH----HHHHHHHCCCCCCCcEEEeec
Q 019990 83 NIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEKHAAPNCKVLVVANPANTN----ALILKEFAPSIPAKNITCLTR 158 (332)
Q Consensus 83 DiVi~~ag~~~~~~~~~~~~~~~N~~~~~~i~~~i~~~~~~~~~viv~snp~~~~----~~~~~~~~~~~~~~~i~~~t~ 158 (332)
|+||++||.|+++|++|.+++..|+++++++++.+++++ |+++++++|||+|++ ++.+++. +++|++|++|.|.
T Consensus 70 DivvitaG~~~k~g~tR~dll~~N~~i~~~i~~~i~~~~-p~a~vivvtNPvDv~~~i~t~~~~~~-s~~p~~rviG~~~ 147 (310)
T cd01337 70 DVVVIPAGVPRKPGMTRDDLFNINAGIVRDLATAVAKAC-PKALILIISNPVNSTVPIAAEVLKKA-GVYDPKRLFGVTT 147 (310)
T ss_pred CEEEEeCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhC-CCeEEEEccCchhhHHHHHHHHHHHh-cCCCHHHEEeeec
Confidence 999999999999999999999999999999999999997 899999999999997 7777886 8899999888888
Q ss_pred ccHHHHHHHHHHHcCCCCCCeeeeEEEecC-CCceeecccCcccccCCCCcchhhhccccccchhHHHHHHHhhHHHHHH
Q 019990 159 LDHNRAMGQISERLKVHVSDVKNVIIWGNH-SSTQYPDVNHATVTTSKGEKPVREAVADDNWLNTEFITTVQQRGAAIIK 237 (332)
Q Consensus 159 l~~~r~~~~~a~~~~v~~~~v~~~~V~G~h-g~~~v~~~s~~~v~~~~~~~p~~~~~~~~~~~~~~~~~~v~~~~~~i~~ 237 (332)
||+.|+++++|+++|+++++|+++ ||||| |+++||+||++.+ . .++ .++ .++++.+++++++++|++
T Consensus 148 LDs~R~~~~la~~l~v~~~~V~~~-v~GeHsGds~vp~~S~~~~----~----~~~-~~~--~~~~i~~~v~~~g~~Ii~ 215 (310)
T cd01337 148 LDVVRANTFVAELLGLDPAKVNVP-VIGGHSGVTILPLLSQCQP----P----FTF-DQE--EIEALTHRIQFGGDEVVK 215 (310)
T ss_pred hHHHHHHHHHHHHhCcCHHHEEEE-EEecCCCCceecccccccc----c----ccC-CHH--HHHHHHHHHHHHHHHHHh
Confidence 999999999999999999999976 69999 8999999999976 2 222 222 257899999999999999
Q ss_pred hc-C-CcchHHHHHHHHHHHHHHHcC-CCCCcEEEEEEeecCCCCCCCCeEEEEeEEEe-CCeEEEecCC-CCCHHHHHH
Q 019990 238 AR-K-LSSALSAASSACDHIRDWVLG-TPKGTWVSMGVYSDGSYGIPEGLIYSFPVTCE-KGEWSIVKGL-KVDEFSRAK 312 (332)
Q Consensus 238 ~~-g-~~~~~~~a~a~~~~i~~~~~~-~~~~~i~~~~v~~~g~yg~~~~~~~s~Pv~~~-~G~~~~~~~~-~l~~~E~~~ 312 (332)
.| | +++++++|.++++++.+++.+ .+++.+++++ +.+|+ |. +++|||+||++| +|+.++++ + +|+++|+++
T Consensus 216 ~k~gkg~t~~~~a~a~~~iv~aIl~~~~~~~~~~~~s-~~~~~-g~-~~v~~s~P~~ig~~Gv~~i~~-l~~L~~~E~~~ 291 (310)
T cd01337 216 AKAGAGSATLSMAYAGARFANSLLRGLKGEKGVIECA-YVESD-VT-EAPFFATPVELGKNGVEKNLG-LGKLNDYEKKL 291 (310)
T ss_pred CccCCCCcchhHHHHHHHHHHHHHHhcCCCcceEEEE-EEecc-CC-CceEEEEEEEEeCCeEEEEeC-CCCCCHHHHHH
Confidence 85 2 355578899999998888743 2345678777 66666 65 799999999999 99999985 9 699999999
Q ss_pred HHHHHHHHHHHHHHHhhhh
Q 019990 313 MDATAEELAEEKTLAYSCL 331 (332)
Q Consensus 313 l~~s~~~i~~~~~~~~~~~ 331 (332)
|++|++.|++.++++++|.
T Consensus 292 l~~S~~~i~~~~~~g~~~~ 310 (310)
T cd01337 292 LEAALPELKKNIEKGVDFV 310 (310)
T ss_pred HHHHHHHHHHHHhhhcccC
Confidence 9999999999999999884
|
MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subfamily are localized to the glycosome and mitochondria. MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others. |
| >TIGR01772 MDH_euk_gproteo malate dehydrogenase, NAD-dependent | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.9e-57 Score=410.21 Aligned_cols=297 Identities=25% Similarity=0.330 Sum_probs=255.1
Q ss_pred EEEEEcCCChhHHHHHHHHHhcccCCCCCCeEEEEEecccchhhhhhhHhhhhhhccCCccceEEe---CCHHHHhCCCc
Q 019990 7 RVLVTGAAGQIGYALVPMIARGIMLGPDQPVILHMLDIEPAAEALNGVKMELIDAAFPLLKGVVAT---TDVVEACKDVN 83 (332)
Q Consensus 7 kI~VtGaaG~IGs~l~~~L~~~~~~~~~~~~~i~l~D~~~~~~~~~~~~~dl~~~~~~~~~~v~~~---~~~~~a~~~aD 83 (332)
||+|+||+|.||+++++.|+.+++.. +++|+|+++ ..|.++||.|... ...+... ++++++++|||
T Consensus 1 KV~IiGaaG~VG~~~a~~l~~~~~~~-----elvL~Di~~----a~g~a~DL~~~~~--~~~i~~~~~~~~~~~~~~daD 69 (312)
T TIGR01772 1 KVAVLGAAGGIGQPLSLLLKLQPYVS-----ELSLYDIAG----AAGVAADLSHIPT--AASVKGFSGEEGLENALKGAD 69 (312)
T ss_pred CEEEECCCCHHHHHHHHHHHhCCCCc-----EEEEecCCC----CcEEEchhhcCCc--CceEEEecCCCchHHHcCCCC
Confidence 79999977999999999998888754 999999964 5689999999652 2344431 24578999999
Q ss_pred EEEEecCCCCCCCCChhHHHhhhHHHHHHHHHHHHhhcCCCcEEEEEeCChhh----HHHHHHHHCCCCCCCcEEEeecc
Q 019990 84 IAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEKHAAPNCKVLVVANPANT----NALILKEFAPSIPAKNITCLTRL 159 (332)
Q Consensus 84 iVi~~ag~~~~~~~~~~~~~~~N~~~~~~i~~~i~~~~~~~~~viv~snp~~~----~~~~~~~~~~~~~~~~i~~~t~l 159 (332)
+||++||.+++++++|.+++..|+++++++++.+.+++ |+++++++|||+|+ +++++++. +++|++|++|.+.|
T Consensus 70 ivvitaG~~~~~g~~R~dll~~N~~I~~~i~~~i~~~~-p~~iiivvsNPvDv~~~i~t~~~~~~-sg~p~~rViG~g~L 147 (312)
T TIGR01772 70 VVVIPAGVPRKPGMTRDDLFNVNAGIVKDLVAAVAESC-PKAMILVITNPVNSTVPIAAEVLKKK-GVYDPNKLFGVTTL 147 (312)
T ss_pred EEEEeCCCCCCCCccHHHHHHHhHHHHHHHHHHHHHhC-CCeEEEEecCchhhHHHHHHHHHHHh-cCCChHHEEeeecc
Confidence 99999999999999999999999999999999999997 99999999999998 88888887 89999998777789
Q ss_pred cHHHHHHHHHHHcCCCCCCeeeeEEEecCCC-ceeecccCcccccCCCCcchhhhccccccchhHHHHHHHhhHHHHHHh
Q 019990 160 DHNRAMGQISERLKVHVSDVKNVIIWGNHSS-TQYPDVNHATVTTSKGEKPVREAVADDNWLNTEFITTVQQRGAAIIKA 238 (332)
Q Consensus 160 ~~~r~~~~~a~~~~v~~~~v~~~~V~G~hg~-~~v~~~s~~~v~~~~~~~p~~~~~~~~~~~~~~~~~~v~~~~~~i~~~ 238 (332)
|+.|+++++|+++++++++++++ ||||||+ +++|+||++++ . |+ +.++ .++++.+++++++++|++.
T Consensus 148 DsaR~r~~la~~l~v~~~~v~~~-ViGeHg~~s~vp~~S~~~~----~--~~---~~~~--~~~~i~~~v~~~g~~Ii~~ 215 (312)
T TIGR01772 148 DIVRANTFVAELKGKDPMEVNVP-VIGGHSGETIIPLISQCPG----K--VL---FTED--QLEALIHRIQNAGTEVVKA 215 (312)
T ss_pred hHHHHHHHHHHHhCCCHHHeEEE-EEEecCCCccccccccccc----c--CC---CCHH--HHHHHHHHHHHHHHHHHhC
Confidence 99999999999999999999986 6999986 99999999885 2 22 2222 2578999999999999998
Q ss_pred c-C-CcchHHHHHHHHHHHHHHHcC-CCCCcEEEEEEeecCCCCCCCCeEEEEeEEEe-CCeEEEecCC-CCCHHHHHHH
Q 019990 239 R-K-LSSALSAASSACDHIRDWVLG-TPKGTWVSMGVYSDGSYGIPEGLIYSFPVTCE-KGEWSIVKGL-KVDEFSRAKM 313 (332)
Q Consensus 239 ~-g-~~~~~~~a~a~~~~i~~~~~~-~~~~~i~~~~v~~~g~yg~~~~~~~s~Pv~~~-~G~~~~~~~~-~l~~~E~~~l 313 (332)
| | .++++++|+++++++.+++.. .++++++|++ +++|+||. +++|||+||++| +|+.++++ + +||++|+++|
T Consensus 216 k~gkg~t~~~ia~a~~~iv~ail~~~~d~~~v~~~s-~~~g~yg~-~~v~~s~P~~ig~~Gv~~i~~-~~~L~~~E~~~l 292 (312)
T TIGR01772 216 KAGAGSATLSMAFAGARFVLSLVRGLKGEEGVVECA-YVESDGVT-EATFFATPLLLGKNGVEKRLG-IGKLSSFEEKML 292 (312)
T ss_pred ccCCCChhHHHHHHHHHHHHHHHHhhCCCccEEEEE-EEccCCCc-CceEEEEEEEEcCCeeEEEEc-cCCCCHHHHHHH
Confidence 4 2 244578899998877765531 1357899965 88999997 799999999999 99999996 8 8999999999
Q ss_pred HHHHHHHHHHHHHHhhhh
Q 019990 314 DATAEELAEEKTLAYSCL 331 (332)
Q Consensus 314 ~~s~~~i~~~~~~~~~~~ 331 (332)
++|++.|++.++++++|.
T Consensus 293 ~~S~~~i~~~~~~g~~~~ 310 (312)
T TIGR01772 293 NGALPELKKNIKKGEEFV 310 (312)
T ss_pred HHHHHHHHHHHHHHHHHh
Confidence 999999999999999985
|
Although malate dehydrogenases have in some cases been mistaken for lactate dehydrogenases due to the similarity of these two substrates and the apparent ease with which evolution can toggle these activities, critical residues have been identified which can discriminate between the two activities. At the time of the creation of this model no hits above the trusted cutoff contained critical residues typical of lactate dehydrogenases. |
| >PTZ00325 malate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4e-56 Score=406.98 Aligned_cols=301 Identities=23% Similarity=0.296 Sum_probs=259.7
Q ss_pred CCCcEEEEEcCCChhHHHHHHHHHhcccCCCCCCeEEEEEecccchhhhhhhHhhhhhhccCCccceEEe---CCHHHHh
Q 019990 3 KNPLRVLVTGAAGQIGYALVPMIARGIMLGPDQPVILHMLDIEPAAEALNGVKMELIDAAFPLLKGVVAT---TDVVEAC 79 (332)
Q Consensus 3 ~~~~kI~VtGaaG~IGs~l~~~L~~~~~~~~~~~~~i~l~D~~~~~~~~~~~~~dl~~~~~~~~~~v~~~---~~~~~a~ 79 (332)
.+|+||+||||+|.||+++++.|...+++. +++|+|+. .+.+.++|+.|... ...+... .+.++++
T Consensus 6 ~~~~KI~IiGaaG~VGs~~a~~l~~~~~~~-----elvL~Di~----~~~g~a~Dl~~~~~--~~~v~~~td~~~~~~~l 74 (321)
T PTZ00325 6 LKMFKVAVLGAAGGIGQPLSLLLKQNPHVS-----ELSLYDIV----GAPGVAADLSHIDT--PAKVTGYADGELWEKAL 74 (321)
T ss_pred CCCCEEEEECCCCHHHHHHHHHHhcCCCCC-----EEEEEecC----CCcccccchhhcCc--CceEEEecCCCchHHHh
Confidence 357899999988999999999998777654 99999992 46788899998643 1233332 3347899
Q ss_pred CCCcEEEEecCCCCCCCCChhHHHhhhHHHHHHHHHHHHhhcCCCcEEEEEeCChhhHHHHHH----HHCCCCCCCcEEE
Q 019990 80 KDVNIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEKHAAPNCKVLVVANPANTNALILK----EFAPSIPAKNITC 155 (332)
Q Consensus 80 ~~aDiVi~~ag~~~~~~~~~~~~~~~N~~~~~~i~~~i~~~~~~~~~viv~snp~~~~~~~~~----~~~~~~~~~~i~~ 155 (332)
+|+|+||+++|.+++++++|.+++..|+++++++++++++++ |+.+++++|||+|.++++++ +. +++||++++|
T Consensus 75 ~gaDvVVitaG~~~~~~~tR~dll~~N~~i~~~i~~~i~~~~-~~~iviv~SNPvdv~~~~~~~~~~~~-sg~p~~~viG 152 (321)
T PTZ00325 75 RGADLVLICAGVPRKPGMTRDDLFNTNAPIVRDLVAAVASSA-PKAIVGIVSNPVNSTVPIAAETLKKA-GVYDPRKLFG 152 (321)
T ss_pred CCCCEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHC-CCeEEEEecCcHHHHHHHHHhhhhhc-cCCChhheee
Confidence 999999999999999999999999999999999999999997 88899999999999999985 54 7899999877
Q ss_pred eecccHHHHHHHHHHHcCCCCCCeeeeEEEecCCC-ceeecccCcccccCCCCcchhhhccccccchhHHHHHHHhhHHH
Q 019990 156 LTRLDHNRAMGQISERLKVHVSDVKNVIIWGNHSS-TQYPDVNHATVTTSKGEKPVREAVADDNWLNTEFITTVQQRGAA 234 (332)
Q Consensus 156 ~t~l~~~r~~~~~a~~~~v~~~~v~~~~V~G~hg~-~~v~~~s~~~v~~~~~~~p~~~~~~~~~~~~~~~~~~v~~~~~~ 234 (332)
.+.||+.|+++++|+++|++|++|+++ ||||||+ ++||+||++ |.|+. ++ ..+++.+++++++++
T Consensus 153 ~g~LDs~R~r~~la~~l~v~~~~V~~~-VlGeHGd~s~v~~~S~~-------g~~l~----~~--~~~~i~~~v~~~g~~ 218 (321)
T PTZ00325 153 VTTLDVVRARKFVAEALGMNPYDVNVP-VVGGHSGVTIVPLLSQT-------GLSLP----EE--QVEQITHRVQVGGDE 218 (321)
T ss_pred chhHHHHHHHHHHHHHhCcChhheEEE-EEeecCCcccccchhcc-------CCCCC----HH--HHHHHHHHHHHHHHH
Confidence 778999999999999999999999986 6899999 899999997 34553 22 247899999999999
Q ss_pred HHHhcC--CcchHHHHHHHHHHHHHHHcC-CCCCcEEEEEEeecCCCCCCCCeEEEEeEEEe-CCeEEEecCCCCCHHHH
Q 019990 235 IIKARK--LSSALSAASSACDHIRDWVLG-TPKGTWVSMGVYSDGSYGIPEGLIYSFPVTCE-KGEWSIVKGLKVDEFSR 310 (332)
Q Consensus 235 i~~~~g--~~~~~~~a~a~~~~i~~~~~~-~~~~~i~~~~v~~~g~yg~~~~~~~s~Pv~~~-~G~~~~~~~~~l~~~E~ 310 (332)
|++.|| +++++++|+++++++.+++.+ .++++++|++ +++|+||+ +++|||+||++| +|+.++++.++|+++|+
T Consensus 219 Ii~~k~~kg~t~~g~a~a~~~i~~ail~~~~~~~~v~~~~-~~~g~yg~-~~v~~s~P~~ig~~Gv~~i~~~~~L~~~E~ 296 (321)
T PTZ00325 219 VVKAKEGAGSATLSMAYAAAEWSTSVLKALRGDKGIVECA-FVESDMRP-ECPFFSSPVELGKEGVERVLPIGPLNAYEE 296 (321)
T ss_pred HHhcccCCCCchHHHHHHHHHHHHHHHhhcCCCCCeEEEE-EEecCCCC-CCeEEEEEEEEcCCeeEEEcCCCCCCHHHH
Confidence 999873 356678899999988887753 2457899985 89999997 799999999999 99999994389999999
Q ss_pred HHHHHHHHHHHHHHHHHhhhhC
Q 019990 311 AKMDATAEELAEEKTLAYSCLN 332 (332)
Q Consensus 311 ~~l~~s~~~i~~~~~~~~~~~~ 332 (332)
++|++|++.|++.++++++|++
T Consensus 297 ~~l~~S~~~i~~~~~~~~~~~~ 318 (321)
T PTZ00325 297 ELLEAAVPDLKKNIEKGLEFAR 318 (321)
T ss_pred HHHHHHHHHHHHHHHHHHHHHh
Confidence 9999999999999999999974
|
|
| >PTZ00117 malate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-55 Score=406.03 Aligned_cols=304 Identities=25% Similarity=0.379 Sum_probs=265.4
Q ss_pred CCcEEEEEcCCChhHHHHHHHHHhcccCCCCCCeEEEEEecccchhhhhhhHhhhhhhccCCc--cceEEeCCHHHHhCC
Q 019990 4 NPLRVLVTGAAGQIGYALVPMIARGIMLGPDQPVILHMLDIEPAAEALNGVKMELIDAAFPLL--KGVVATTDVVEACKD 81 (332)
Q Consensus 4 ~~~kI~VtGaaG~IGs~l~~~L~~~~~~~~~~~~~i~l~D~~~~~~~~~~~~~dl~~~~~~~~--~~v~~~~~~~~a~~~ 81 (332)
+.+||+|+| +|.+|+++++.|+..++ . +++|+|++. +++.+..+|+.|...... ..+..+++. ++++|
T Consensus 4 ~~~KI~IIG-aG~vG~~ia~~l~~~~~-~-----~l~L~Di~~--~~~~g~~lDl~~~~~~~~~~~~i~~~~d~-~~l~~ 73 (319)
T PTZ00117 4 KRKKISMIG-AGQIGSTVALLILQKNL-G-----DVVLYDVIK--GVPQGKALDLKHFSTLVGSNINILGTNNY-EDIKD 73 (319)
T ss_pred CCcEEEEEC-CCHHHHHHHHHHHHCCC-C-----eEEEEECCC--ccchhHHHHHhhhccccCCCeEEEeCCCH-HHhCC
Confidence 457999999 59999999999988775 2 899999975 456788899988743222 244444554 58999
Q ss_pred CcEEEEecCCCCCCCCChhHHHhhhHHHHHHHHHHHHhhcCCCcEEEEEeCChhhHHHHHHHHCCCCCCCcEEEe-eccc
Q 019990 82 VNIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEKHAAPNCKVLVVANPANTNALILKEFAPSIPAKNITCL-TRLD 160 (332)
Q Consensus 82 aDiVi~~ag~~~~~~~~~~~~~~~N~~~~~~i~~~i~~~~~~~~~viv~snp~~~~~~~~~~~~~~~~~~~i~~~-t~l~ 160 (332)
||+||+++|.+++++++|.+++..|.++++++++.+++++ |+++++++|||++.+++.++++ +++|+++++|. |.+|
T Consensus 74 ADiVVitag~~~~~g~~r~dll~~n~~i~~~i~~~i~~~~-p~a~vivvsNP~di~t~~~~~~-s~~p~~rviG~gt~ld 151 (319)
T PTZ00117 74 SDVVVITAGVQRKEEMTREDLLTINGKIMKSVAESVKKYC-PNAFVICVTNPLDCMVKVFQEK-SGIPSNKICGMAGVLD 151 (319)
T ss_pred CCEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHC-CCeEEEEecChHHHHHHHHHHh-hCCCcccEEEecchHH
Confidence 9999999999999999999999999999999999999998 8999999999999999999997 78999996555 5899
Q ss_pred HHHHHHHHHHHcCCCCCCeeeeEEEecCCCceeecccCcccccCCCCcchhhhccccccc---hhHHHHHHHhhHHHHHH
Q 019990 161 HNRAMGQISERLKVHVSDVKNVIIWGNHSSTQYPDVNHATVTTSKGEKPVREAVADDNWL---NTEFITTVQQRGAAIIK 237 (332)
Q Consensus 161 ~~r~~~~~a~~~~v~~~~v~~~~V~G~hg~~~v~~~s~~~v~~~~~~~p~~~~~~~~~~~---~~~~~~~v~~~~~~i~~ 237 (332)
+.|+++++|+++|+++++|+.++ +|+||++++|+||++++ +|+|+.+++.++.|. ++++.+++++++++|++
T Consensus 152 s~R~~~~la~~l~v~~~~v~~~v-iGeHg~~~v~~~s~~~v----~g~p~~~~~~~~~~~~~~~~~i~~~v~~~g~~ii~ 226 (319)
T PTZ00117 152 SSRFRCNLAEKLGVSPGDVSAVV-IGGHGDLMVPLPRYCTV----NGIPLSDFVKKGAITEKEINEIIKKTRNMGGEIVK 226 (319)
T ss_pred HHHHHHHHHHHhCCCcccceEEE-eecCCCcEEeceeeceE----CCEEHHHHhhccccCHHHHHHHHHHHHHHHHHHHh
Confidence 99999999999999999999875 79999999999999999 999999997654453 46799999999999999
Q ss_pred h--cCCcchHHHHHHHHHHHHHHHcCCCCCcEEEEEEeecCCCCCCCCeEEEEeEEEe-CCeEEEecCCCCCHHHHHHHH
Q 019990 238 A--RKLSSALSAASSACDHIRDWVLGTPKGTWVSMGVYSDGSYGIPEGLIYSFPVTCE-KGEWSIVKGLKVDEFSRAKMD 314 (332)
Q Consensus 238 ~--~g~~~~~~~a~a~~~~i~~~~~~~~~~~i~~~~v~~~g~yg~~~~~~~s~Pv~~~-~G~~~~~~~~~l~~~E~~~l~ 314 (332)
. || ++++++|+++++++.+++.+ +++++|+|++++|+||+ .++|||+||+++ +|++++++ ++|+++|+++|+
T Consensus 227 ~~~kg-~t~~~~a~a~~~~~~ail~~--~~~v~~~s~~~~g~yg~-~~~~~s~P~~ig~~Gv~~i~~-l~l~~~E~~~l~ 301 (319)
T PTZ00117 227 LLKKG-SAFFAPAAAIVAMIEAYLKD--EKRVLVCSVYLNGQYNC-KNLFVGVPVVIGGKGIEKVIE-LELNAEEKELFD 301 (319)
T ss_pred hcCCC-ChHHHHHHHHHHHHHHHhcC--CCeEEEEEEEeccccCC-CCeEEEEEEEEeCCeEEEEeC-CCCCHHHHHHHH
Confidence 7 55 44578899999988887764 58999999999999999 499999999999 99999996 999999999999
Q ss_pred HHHHHHHHHHHHHhh
Q 019990 315 ATAEELAEEKTLAYS 329 (332)
Q Consensus 315 ~s~~~i~~~~~~~~~ 329 (332)
+|++.|++.++....
T Consensus 302 ~s~~~l~~~~~~~~~ 316 (319)
T PTZ00117 302 KSIESIQELTQKAKA 316 (319)
T ss_pred HHHHHHHHHHHHHHH
Confidence 999999999887654
|
|
| >PTZ00082 L-lactate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.5e-55 Score=403.07 Aligned_cols=303 Identities=21% Similarity=0.342 Sum_probs=262.4
Q ss_pred CCCcEEEEEcCCChhHHHHHHHHHhcccCCCCCCeEEEEEecccchhhhhhhHhhhhhhccCCc--cceEEeCCHHHHhC
Q 019990 3 KNPLRVLVTGAAGQIGYALVPMIARGIMLGPDQPVILHMLDIEPAAEALNGVKMELIDAAFPLL--KGVVATTDVVEACK 80 (332)
Q Consensus 3 ~~~~kI~VtGaaG~IGs~l~~~L~~~~~~~~~~~~~i~l~D~~~~~~~~~~~~~dl~~~~~~~~--~~v~~~~~~~~a~~ 80 (332)
++++||+|+| +|.+|+++++.++..++. +++|+|+++ +++.+..+|+.|...... ..+..+++. ++++
T Consensus 4 ~~~~KI~IIG-aG~vG~~ia~~la~~gl~------~i~LvDi~~--~~~~~~~ld~~~~~~~~~~~~~I~~~~d~-~~l~ 73 (321)
T PTZ00082 4 IKRRKISLIG-SGNIGGVMAYLIVLKNLG------DVVLFDIVK--NIPQGKALDISHSNVIAGSNSKVIGTNNY-EDIA 73 (321)
T ss_pred CCCCEEEEEC-CCHHHHHHHHHHHhCCCC------eEEEEeCCC--chhhHHHHHHHhhhhccCCCeEEEECCCH-HHhC
Confidence 4568999999 699999999998887763 799999975 356778889988643222 345544564 7899
Q ss_pred CCcEEEEecCCCCCCCC-----ChhHHHhhhHHHHHHHHHHHHhhcCCCcEEEEEeCChhhHHHHHHHHCCCCCCCcEEE
Q 019990 81 DVNIAVMVGGFPRKEGM-----ERKDVMSKNVSIYKAQASALEKHAAPNCKVLVVANPANTNALILKEFAPSIPAKNITC 155 (332)
Q Consensus 81 ~aDiVi~~ag~~~~~~~-----~~~~~~~~N~~~~~~i~~~i~~~~~~~~~viv~snp~~~~~~~~~~~~~~~~~~~i~~ 155 (332)
+||+||+++|.++++++ +|.+++..|+++++++++.+++++ |+++++++|||++.+++.+++. +++|++|++|
T Consensus 74 ~aDiVI~tag~~~~~~~~~~~~~r~~~l~~n~~i~~~i~~~i~~~~-p~a~~iv~sNP~di~t~~~~~~-sg~p~~rviG 151 (321)
T PTZ00082 74 GSDVVIVTAGLTKRPGKSDKEWNRDDLLPLNAKIMDEVAEGIKKYC-PNAFVIVITNPLDVMVKLLQEH-SGLPKNKVCG 151 (321)
T ss_pred CCCEEEECCCCCCCCCCCcCCCCHHHHHHHHHHHHHHHHHHHHHHC-CCeEEEEecCcHHHHHHHHHHh-cCCChhhEEE
Confidence 99999999999999988 999999999999999999999998 8899999999999999999987 7899898655
Q ss_pred e-ecccHHHHHHHHHHHcCCCCCCeeeeEEEecCCCceeecccCcccccCCCCcchhhhcccccc---chhHHHHHHHhh
Q 019990 156 L-TRLDHNRAMGQISERLKVHVSDVKNVIIWGNHSSTQYPDVNHATVTTSKGEKPVREAVADDNW---LNTEFITTVQQR 231 (332)
Q Consensus 156 ~-t~l~~~r~~~~~a~~~~v~~~~v~~~~V~G~hg~~~v~~~s~~~v~~~~~~~p~~~~~~~~~~---~~~~~~~~v~~~ 231 (332)
. |.+|+.|+++.+|+++++++++|+++ |+|+||+++||+||++++ +|+|+.+++.++.+ .++++.++++++
T Consensus 152 lgt~lds~R~~~~la~~l~v~~~~v~~~-viGeHg~s~v~~~S~~~i----~g~~~~~~~~~~~~~~~~~~~i~~~~~~~ 226 (321)
T PTZ00082 152 MAGVLDSSRLRTYIAEKLGVNPRDVHAS-VIGAHGDKMVPLPRYVTV----GGIPLSEFIKKGLITQEEIDEIVERTRNT 226 (321)
T ss_pred ecCcccHHHHHHHHHHHhCCCcccceee-EEecCCCceEecceeeEE----CCEEHHHhhhcccCCHHHHHHHHHHHHHH
Confidence 5 59999999999999999999999987 579999999999999999 99999998743211 257899999999
Q ss_pred HHHHHHhcC-CcchHHHHHHHHHHHHHHHcCCCCCcEEEEEEeecCCCCCCCCeEEEEeEEEe-CCeEEEecCCCCCHHH
Q 019990 232 GAAIIKARK-LSSALSAASSACDHIRDWVLGTPKGTWVSMGVYSDGSYGIPEGLIYSFPVTCE-KGEWSIVKGLKVDEFS 309 (332)
Q Consensus 232 ~~~i~~~~g-~~~~~~~a~a~~~~i~~~~~~~~~~~i~~~~v~~~g~yg~~~~~~~s~Pv~~~-~G~~~~~~~~~l~~~E 309 (332)
+++|++.|| +++++++|.++++++.+++. |+++++|+|++++|+||+ +++|||+||++| +|++++++ ++||++|
T Consensus 227 g~~i~~~~gkg~t~~~ia~a~~~i~~ail~--d~~~v~~vs~~~~g~yg~-~~v~~s~P~~ig~~Gv~~i~~-~~l~~~E 302 (321)
T PTZ00082 227 GKEIVDLLGTGSAYFAPAAAAIEMAEAYLK--DKKRVLPCSAYLEGQYGH-KDIYMGTPAVIGANGVEKIIE-LDLTPEE 302 (321)
T ss_pred HHHHHhhcCCCccHHHHHHHHHHHHHHHHc--CCCcEEEEEEEecccCCC-CCeEEEEEEEEeCCeEEEEeC-CCCCHHH
Confidence 999999753 34457889999988877666 468999999999999999 799999999999 99999996 9999999
Q ss_pred HHHHHHHHHHHHHHHHH
Q 019990 310 RAKMDATAEELAEEKTL 326 (332)
Q Consensus 310 ~~~l~~s~~~i~~~~~~ 326 (332)
+++|++|++.|++.++.
T Consensus 303 ~~~l~~sa~~i~~~~~~ 319 (321)
T PTZ00082 303 QKKFDESIKEVKRLEAL 319 (321)
T ss_pred HHHHHHHHHHHHHHHhh
Confidence 99999999999988654
|
|
| >cd05292 LDH_2 A subgroup of L-lactate dehydrogenases | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-55 Score=403.97 Aligned_cols=299 Identities=22% Similarity=0.325 Sum_probs=262.5
Q ss_pred cEEEEEcCCChhHHHHHHHHHhcccCCCCCCeEEEEEecccchhhhhhhHhhhhhhccCCccceEEeCCHHHHhCCCcEE
Q 019990 6 LRVLVTGAAGQIGYALVPMIARGIMLGPDQPVILHMLDIEPAAEALNGVKMELIDAAFPLLKGVVATTDVVEACKDVNIA 85 (332)
Q Consensus 6 ~kI~VtGaaG~IGs~l~~~L~~~~~~~~~~~~~i~l~D~~~~~~~~~~~~~dl~~~~~~~~~~v~~~~~~~~a~~~aDiV 85 (332)
|||+|+| +|.+|++++..|+..++.. ++.++|++. +++.+.++|+.|... .........+.++++++||+|
T Consensus 1 mkI~IIG-aG~VG~~~a~~l~~~g~~~-----ev~l~D~~~--~~~~g~a~dl~~~~~-~~~~~~i~~~d~~~l~~aDiV 71 (308)
T cd05292 1 MKVAIVG-AGFVGSTTAYALLLRGLAS-----EIVLVDINK--AKAEGEAMDLAHGTP-FVKPVRIYAGDYADCKGADVV 71 (308)
T ss_pred CEEEEEC-CCHHHHHHHHHHHHcCCCC-----EEEEEECCc--hhhhhHHHHHHcccc-ccCCeEEeeCCHHHhCCCCEE
Confidence 4899999 5999999999999888643 899999864 457788999988642 222222333345789999999
Q ss_pred EEecCCCCCCCCChhHHHhhhHHHHHHHHHHHHhhcCCCcEEEEEeCChhhHHHHHHHHCCCCCCCc-EEEeecccHHHH
Q 019990 86 VMVGGFPRKEGMERKDVMSKNVSIYKAQASALEKHAAPNCKVLVVANPANTNALILKEFAPSIPAKN-ITCLTRLDHNRA 164 (332)
Q Consensus 86 i~~ag~~~~~~~~~~~~~~~N~~~~~~i~~~i~~~~~~~~~viv~snp~~~~~~~~~~~~~~~~~~~-i~~~t~l~~~r~ 164 (332)
|++++.+++++++|.+++..|+++++++++.+++++ |++++++++||+|.++++++++ +++|++| |+.+|.||+.|+
T Consensus 72 iita~~~~~~~~~r~dl~~~n~~i~~~~~~~l~~~~-~~giiiv~tNP~d~~~~~~~~~-sg~p~~~viG~gt~LDs~R~ 149 (308)
T cd05292 72 VITAGANQKPGETRLDLLKRNVAIFKEIIPQILKYA-PDAILLVVTNPVDVLTYVAYKL-SGLPPNRVIGSGTVLDTARF 149 (308)
T ss_pred EEccCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHC-CCeEEEEecCcHHHHHHHHHHH-HCcCHHHeecccchhhHHHH
Confidence 999999999999999999999999999999999998 8899999999999999999998 7999999 556699999999
Q ss_pred HHHHHHHcCCCCCCeeeeEEEecCCCceeecccCcccccCCCCcchhhhcccc--c---cchhHHHHHHHhhHHHHHHhc
Q 019990 165 MGQISERLKVHVSDVKNVIIWGNHSSTQYPDVNHATVTTSKGEKPVREAVADD--N---WLNTEFITTVQQRGAAIIKAR 239 (332)
Q Consensus 165 ~~~~a~~~~v~~~~v~~~~V~G~hg~~~v~~~s~~~v~~~~~~~p~~~~~~~~--~---~~~~~~~~~v~~~~~~i~~~~ 239 (332)
++++|+++++++.+|+.+ |+|+||++++|+||++++ +|+|+.+++.+. . +.++++.+++++++++|++.|
T Consensus 150 ~~~la~~~~v~~~~v~~~-viGeHg~~~~~~~S~~~v----~g~~~~~~~~~~~~~~~~~~~~~l~~~v~~~g~~ii~~k 224 (308)
T cd05292 150 RYLLGEHLGVDPRSVHAY-IIGEHGDSEVAVWSSANI----GGVPLDEFCKLCGRPFDEEVREEIFEEVRNAAYEIIERK 224 (308)
T ss_pred HHHHHHHhCCCccceece-eeccCCCcEEecceeeeE----CCEEHHHHhhhcccccCHHHHHHHHHHHHHHHHHHHHcC
Confidence 999999999999999987 689999999999999999 999999987542 1 236789999999999999999
Q ss_pred CCcchHHHHHHHHHHHHHHHcCCCCCcEEEEEEeecCCCCCCCCeEEEEeEEEe-CCeEEEecCCCCCHHHHHHHHHHHH
Q 019990 240 KLSSALSAASSACDHIRDWVLGTPKGTWVSMGVYSDGSYGIPEGLIYSFPVTCE-KGEWSIVKGLKVDEFSRAKMDATAE 318 (332)
Q Consensus 240 g~~~~~~~a~a~~~~i~~~~~~~~~~~i~~~~v~~~g~yg~~~~~~~s~Pv~~~-~G~~~~~~~~~l~~~E~~~l~~s~~ 318 (332)
|.|+ +++|+++++++.+++. ++++++|+|++++|+||+ +++|||+||++| +|++++++ ++||++|+++|++|++
T Consensus 225 g~t~-~~~a~a~~~i~~ail~--~~~~v~~~s~~~~g~yg~-~~~~~s~P~~ig~~Gv~~i~~-~~L~~~E~~~l~~s~~ 299 (308)
T cd05292 225 GATY-YAIGLALARIVEAILR--DENSVLTVSSLLDGQYGI-KDVALSLPCIVGRSGVERVLP-PPLSEEEEEALRASAE 299 (308)
T ss_pred CccH-HHHHHHHHHHHHHHHc--CCCcEEEEEEEEcccCCC-CCEEEEEEEEEeCCceEEecC-CCCCHHHHHHHHHHHH
Confidence 9775 5668899988887665 468999999999999998 799999999999 99999996 9999999999999999
Q ss_pred HHHHHHH
Q 019990 319 ELAEEKT 325 (332)
Q Consensus 319 ~i~~~~~ 325 (332)
.|++.++
T Consensus 300 ~i~~~~~ 306 (308)
T cd05292 300 VLKEAIE 306 (308)
T ss_pred HHHHHHh
Confidence 9998876
|
L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed predominantly of bacterial LDHs and a few fungal LDHs. Bacterial LDHs may be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others. |
| >cd05294 LDH-like_MDH_nadp A lactate dehydrogenases-like structure with malate dehydrogenase enzymatic activity | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.2e-55 Score=402.18 Aligned_cols=303 Identities=24% Similarity=0.390 Sum_probs=266.2
Q ss_pred cEEEEEcCCChhHHHHHHHHHhcccCCCCCCeEEEEEecccchhhhhhhHhhhhhhccCC--ccceEEeCCHHHHhCCCc
Q 019990 6 LRVLVTGAAGQIGYALVPMIARGIMLGPDQPVILHMLDIEPAAEALNGVKMELIDAAFPL--LKGVVATTDVVEACKDVN 83 (332)
Q Consensus 6 ~kI~VtGaaG~IGs~l~~~L~~~~~~~~~~~~~i~l~D~~~~~~~~~~~~~dl~~~~~~~--~~~v~~~~~~~~a~~~aD 83 (332)
|||+|+||+|.+|++++..|+..++.+ +|+++|++...+++.+..+|+.|..... ...+....+ ++++++||
T Consensus 1 ~kI~IiGatG~vG~~~a~~l~~~g~~~-----~v~lvd~~~~~~~l~~~~~dl~d~~~~~~~~~~i~~~~d-~~~l~~aD 74 (309)
T cd05294 1 MKVSIIGASGRVGSATALLLAKEDVVK-----EINLISRPKSLEKLKGLRLDIYDALAAAGIDAEIKISSD-LSDVAGSD 74 (309)
T ss_pred CEEEEECCCChHHHHHHHHHHhCCCCC-----EEEEEECcccccccccccchhhhchhccCCCcEEEECCC-HHHhCCCC
Confidence 589999988999999999999988754 8999999543357888899998753222 224544445 56799999
Q ss_pred EEEEecCCCCCCCCChhHHHhhhHHHHHHHHHHHHhhcCCCcEEEEEeCChhhHHHHHHHHCCCCCCCcEE-EeecccHH
Q 019990 84 IAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEKHAAPNCKVLVVANPANTNALILKEFAPSIPAKNIT-CLTRLDHN 162 (332)
Q Consensus 84 iVi~~ag~~~~~~~~~~~~~~~N~~~~~~i~~~i~~~~~~~~~viv~snp~~~~~~~~~~~~~~~~~~~i~-~~t~l~~~ 162 (332)
+||+++|.|++++++|.+++..|+++++++++.+.+++ |++++++++||++.++++++++ +++|+++++ .+|.||+.
T Consensus 75 iViitag~p~~~~~~r~dl~~~n~~i~~~~~~~i~~~~-~~~~viv~~npvd~~t~~~~~~-~g~~~~~viG~gt~LDs~ 152 (309)
T cd05294 75 IVIITAGVPRKEGMSRLDLAKKNAKIVKKYAKQIAEFA-PDTKILVVTNPVDVMTYKALKE-SGFDKNRVFGLGTHLDSL 152 (309)
T ss_pred EEEEecCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHC-CCeEEEEeCCchHHHHHHHHHh-cCCCHHHEeeccchHHHH
Confidence 99999999999999999999999999999999999998 8999999999999999999998 789999955 55899999
Q ss_pred HHHHHHHHHcCCCCCCeeeeEEEecCCCceeecccCcccccCCCCcchhhhccccccchhHHHHHHHhhHHHHHHhcCCc
Q 019990 163 RAMGQISERLKVHVSDVKNVIIWGNHSSTQYPDVNHATVTTSKGEKPVREAVADDNWLNTEFITTVQQRGAAIIKARKLS 242 (332)
Q Consensus 163 r~~~~~a~~~~v~~~~v~~~~V~G~hg~~~v~~~s~~~v~~~~~~~p~~~~~~~~~~~~~~~~~~v~~~~~~i~~~~g~~ 242 (332)
|+++++|+++++++++|+++ |+|+||++++|+||++++ +|+|+.+++..+++..+++.+++++++++|++.||++
T Consensus 153 R~~~~la~~l~v~~~~v~~~-viGeHg~s~~~~~S~~~i----~g~~~~~~~~~~~~~~~~i~~~v~~~g~~i~~~kg~t 227 (309)
T cd05294 153 RFKVAIAKHFNVHISEVHTR-IIGEHGDSMVPLISSTSI----GGIPIKRFPEYKDFDVEKIVETVKNAGQNIISLKGGS 227 (309)
T ss_pred HHHHHHHHHHCcChHHeEEE-EEecCCCceEeeeeecEE----CCEEHHHhhcccHHHHHHHHHHHHHHHHHHHHhcCCc
Confidence 99999999999999999987 579999999999999999 9999999875434556889999999999999999987
Q ss_pred chHHHHHHHHHHHHHHHcCCCCCcEEEEEEeecCCC-CCCCCeEEEEeEEEe-CCeEEEecCCCCCHHHHHHHHHHHHHH
Q 019990 243 SALSAASSACDHIRDWVLGTPKGTWVSMGVYSDGSY-GIPEGLIYSFPVTCE-KGEWSIVKGLKVDEFSRAKMDATAEEL 320 (332)
Q Consensus 243 ~~~~~a~a~~~~i~~~~~~~~~~~i~~~~v~~~g~y-g~~~~~~~s~Pv~~~-~G~~~~~~~~~l~~~E~~~l~~s~~~i 320 (332)
+ +++|.++++++.+++. +++.++|++++.+|+| |++ ++|+|+||+++ +|++++++ ++|+++|+++|++|++.|
T Consensus 228 ~-~~~a~~~~~ii~ail~--~~~~v~~vsv~~~g~~~~~~-~~~~svP~~ig~~Gv~~i~~-l~l~~~E~~~l~~s~~~i 302 (309)
T cd05294 228 E-YGPASAISNLVRTIAN--DERRILTVSTYLEGEIDGIR-DVCIGVPVKLGKNGIEEIVP-IEMDDDEREAFRKSAEIV 302 (309)
T ss_pred h-hhHHHHHHHHHHHHHC--CCCeEEEEEEEECCccCCCC-CeEEEeEEEEcCCccEEEeC-CCCCHHHHHHHHHHHHHH
Confidence 6 5778999988877665 4579999999999998 995 99999999999 99999996 999999999999999999
Q ss_pred HHHHHH
Q 019990 321 AEEKTL 326 (332)
Q Consensus 321 ~~~~~~ 326 (332)
++.++.
T Consensus 303 ~~~~~~ 308 (309)
T cd05294 303 KKYTRE 308 (309)
T ss_pred HHHHhc
Confidence 987653
|
The LDH-like MDH proteins have a lactate dehyhydrogenase-like (LDH-like) structure and malate dehydrogenase (MDH) enzymatic activity. This subgroup is composed of some archaeal LDH-like MDHs that prefer NADP(H) rather than NAD(H) as a cofactor. One member, MJ0490 from Methanococcus jannaschii, has been observed to form dimers and tetramers during crystalization, although it is believed to exist primarilly as a tetramer in solution. In addition to its MDH activity, MJ0490 also possesses fructose-1,6-bisphosphate-activated LDH activity. Members of this subgroup have a higher sequence similarity to LDHs than to other MDHs. LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carbox |
| >TIGR01763 MalateDH_bact malate dehydrogenase, NAD-dependent | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.2e-55 Score=399.84 Aligned_cols=298 Identities=26% Similarity=0.395 Sum_probs=258.2
Q ss_pred cEEEEEcCCChhHHHHHHHHHhcccCCCCCCeEEEEEecccchhhhhhhHhhhhhhccC--CccceEEeCCHHHHhCCCc
Q 019990 6 LRVLVTGAAGQIGYALVPMIARGIMLGPDQPVILHMLDIEPAAEALNGVKMELIDAAFP--LLKGVVATTDVVEACKDVN 83 (332)
Q Consensus 6 ~kI~VtGaaG~IGs~l~~~L~~~~~~~~~~~~~i~l~D~~~~~~~~~~~~~dl~~~~~~--~~~~v~~~~~~~~a~~~aD 83 (332)
|||+|+| +|.+|+.++..|+..++. +|+++|+.+ +...+...|+.|.... ....++.+.+. +.+++||
T Consensus 2 ~KV~VIG-aG~vG~~iA~~la~~g~~------~VvlvDi~~--~l~~g~a~d~~~~~~~~~~~~~i~~t~d~-~~~~~aD 71 (305)
T TIGR01763 2 KKISVIG-AGFVGATTAFRLAEKELA------DLVLLDVVE--GIPQGKALDMYEASPVGGFDTKVTGTNNY-ADTANSD 71 (305)
T ss_pred CEEEEEC-cCHHHHHHHHHHHHcCCC------eEEEEeCCC--ChhHHHHHhhhhhhhccCCCcEEEecCCH-HHhCCCC
Confidence 5899999 699999999999987752 699999964 3556677777765321 12356555665 4589999
Q ss_pred EEEEecCCCCCCCCChhHHHhhhHHHHHHHHHHHHhhcCCCcEEEEEeCChhhHHHHHHHHCCCCCCCcEEEe-ecccHH
Q 019990 84 IAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEKHAAPNCKVLVVANPANTNALILKEFAPSIPAKNITCL-TRLDHN 162 (332)
Q Consensus 84 iVi~~ag~~~~~~~~~~~~~~~N~~~~~~i~~~i~~~~~~~~~viv~snp~~~~~~~~~~~~~~~~~~~i~~~-t~l~~~ 162 (332)
+||+++|.|++++++|.+++..|.++++++++.+.+++ |++++|++|||+|+++++++++ +++|++|++|. |.||+.
T Consensus 72 iVIitag~p~~~~~sR~~l~~~N~~iv~~i~~~I~~~~-p~~~iIv~tNP~di~t~~~~~~-sg~~~~rviG~g~~lds~ 149 (305)
T TIGR01763 72 IVVITAGLPRKPGMSREDLLSMNAGIVREVTGRIMEHS-PNPIIVVVSNPLDAMTYVAWQK-SGFPKERVIGQAGVLDSA 149 (305)
T ss_pred EEEEcCCCCCCcCCCHHHHHHHHHHHHHHHHHHHHHHC-CCeEEEEecCcHHHHHHHHHHH-HCcCHHHEEEeccchHHH
Confidence 99999999999999999999999999999999999997 8999999999999999999998 79999996555 699999
Q ss_pred HHHHHHHHHcCCCCCCeeeeEEEecCCCceeecccCcccccCCCCcchhhhccccccchhHHHHHHHhhHHHHHHhcC-C
Q 019990 163 RAMGQISERLKVHVSDVKNVIIWGNHSSTQYPDVNHATVTTSKGEKPVREAVADDNWLNTEFITTVQQRGAAIIKARK-L 241 (332)
Q Consensus 163 r~~~~~a~~~~v~~~~v~~~~V~G~hg~~~v~~~s~~~v~~~~~~~p~~~~~~~~~~~~~~~~~~v~~~~~~i~~~~g-~ 241 (332)
|+++.+|+++++++++|+++ ||||||++++|+||++++ +|+|+.+++.++. ++++.+++++++++|++.+| +
T Consensus 150 R~~~~la~~l~v~~~~v~~~-v~GeHg~s~~~~wS~~~i----~g~~~~~~~~~~~--~~~l~~~v~~~g~~ii~~~~kg 222 (305)
T TIGR01763 150 RFRTFIAMELGVSVQDVTAC-VLGGHGDAMVPLVRYSTV----AGIPVADLISAER--IAEIVERTRKGGGEIVNLLKQG 222 (305)
T ss_pred HHHHHHHHHhCcCHHHeeee-EEecCCCcEEeeeeeeEE----CCEEHHHhcCHHH--HHHHHHHHHHHHHHHHHhcCCC
Confidence 99999999999999999997 689999999999999999 9999999876542 57899999999999999844 2
Q ss_pred cchHHHHHHHHHHHHHHHcCCCCCcEEEEEEeecCCCCCCCCeEEEEeEEEe-CCeEEEecCCCCCHHHHHHHHHHHHHH
Q 019990 242 SSALSAASSACDHIRDWVLGTPKGTWVSMGVYSDGSYGIPEGLIYSFPVTCE-KGEWSIVKGLKVDEFSRAKMDATAEEL 320 (332)
Q Consensus 242 ~~~~~~a~a~~~~i~~~~~~~~~~~i~~~~v~~~g~yg~~~~~~~s~Pv~~~-~G~~~~~~~~~l~~~E~~~l~~s~~~i 320 (332)
++++++|+++++++.+ +.+ |+++++|+|++++|+||+ +++|||+||++| +|+.++++ ++|+++|+++|++|++.|
T Consensus 223 ~t~~~~a~~~~~i~~a-i~~-~~~~v~~~s~~~~~~yg~-~~v~~s~P~~ig~~Gv~~i~~-~~l~~~E~~~l~~s~~~i 298 (305)
T TIGR01763 223 SAYYAPAASVVEMVEA-ILK-DRKRVLPCAAYLDGQYGI-DGIYVGVPVILGKNGVEHIYE-LKLDQSELALLNKSAKIV 298 (305)
T ss_pred ChHHHHHHHHHHHHHH-HhC-CCCeEEEEEEEecccCCC-CceEEEEEEEEeCCeEEEEeC-CCCCHHHHHHHHHHHHHH
Confidence 3446778999876655 554 468999999999999998 799999999999 99999996 999999999999999999
Q ss_pred HHHHHH
Q 019990 321 AEEKTL 326 (332)
Q Consensus 321 ~~~~~~ 326 (332)
++.+++
T Consensus 299 ~~~~~~ 304 (305)
T TIGR01763 299 DENCKM 304 (305)
T ss_pred HHHHhc
Confidence 988753
|
The annotation of Botryococcus braunii as lactate dehydrogenase appears top be in error. This was initially annotated as MDH by Swiss-Prot and then changed. The rationale for either of these annotations is not traceable. |
| >PLN00106 malate dehydrogenase | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.3e-54 Score=393.33 Aligned_cols=294 Identities=26% Similarity=0.378 Sum_probs=251.4
Q ss_pred CcEEEEEcCCChhHHHHHHHHHhcccCCCCCCeEEEEEecccchhhhhhhHhhhhhhccCC-ccceEEeCCHHHHhCCCc
Q 019990 5 PLRVLVTGAAGQIGYALVPMIARGIMLGPDQPVILHMLDIEPAAEALNGVKMELIDAAFPL-LKGVVATTDVVEACKDVN 83 (332)
Q Consensus 5 ~~kI~VtGaaG~IGs~l~~~L~~~~~~~~~~~~~i~l~D~~~~~~~~~~~~~dl~~~~~~~-~~~v~~~~~~~~a~~~aD 83 (332)
+.||+||||+|.||+++++.|..+++++ +++|+|++. +.+.++||.|+.... ..++...++++++++|+|
T Consensus 18 ~~KV~IiGaaG~VG~~~a~~l~~~~~~~-----el~L~Di~~----~~g~a~Dl~~~~~~~~i~~~~~~~d~~~~l~~aD 88 (323)
T PLN00106 18 GFKVAVLGAAGGIGQPLSLLMKMNPLVS-----ELHLYDIAN----TPGVAADVSHINTPAQVRGFLGDDQLGDALKGAD 88 (323)
T ss_pred CCEEEEECCCCHHHHHHHHHHHhCCCCC-----EEEEEecCC----CCeeEchhhhCCcCceEEEEeCCCCHHHHcCCCC
Confidence 5799999988999999999999888765 999999964 578889999976432 123334556789999999
Q ss_pred EEEEecCCCCCCCCChhHHHhhhHHHHHHHHHHHHhhcCCCcEEEEEeCChh----hHHHHHHHHCCCCCCCcEEEeecc
Q 019990 84 IAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEKHAAPNCKVLVVANPAN----TNALILKEFAPSIPAKNITCLTRL 159 (332)
Q Consensus 84 iVi~~ag~~~~~~~~~~~~~~~N~~~~~~i~~~i~~~~~~~~~viv~snp~~----~~~~~~~~~~~~~~~~~i~~~t~l 159 (332)
+|||+||.+++++++|.+++..|+++++++++.+++++ |+++++++|||+| ++++.+++. +++||++++|.++|
T Consensus 89 iVVitAG~~~~~g~~R~dll~~N~~i~~~i~~~i~~~~-p~aivivvSNPvD~~~~i~t~~~~~~-s~~p~~~viG~~~L 166 (323)
T PLN00106 89 LVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEAVAKHC-PNALVNIISNPVNSTVPIAAEVLKKA-GVYDPKKLFGVTTL 166 (323)
T ss_pred EEEEeCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHC-CCeEEEEeCCCccccHHHHHHHHHHc-CCCCcceEEEEecc
Confidence 99999999999999999999999999999999999998 8999999999999 888888886 88999999888899
Q ss_pred cHHHHHHHHHHHcCCCCCCeeeeEEEecCC-CceeecccCcccccCCCCcchhhhccccccchhHHHHHHHhhHHHHHHh
Q 019990 160 DHNRAMGQISERLKVHVSDVKNVIIWGNHS-STQYPDVNHATVTTSKGEKPVREAVADDNWLNTEFITTVQQRGAAIIKA 238 (332)
Q Consensus 160 ~~~r~~~~~a~~~~v~~~~v~~~~V~G~hg-~~~v~~~s~~~v~~~~~~~p~~~~~~~~~~~~~~~~~~v~~~~~~i~~~ 238 (332)
|++|+++++|+++|+++.+|+++ |+|+|| +++||+||++.+ . .+ +.++ .++++.+++++++++|++.
T Consensus 167 Ds~Rl~~~lA~~lgv~~~~V~~~-ViGeHg~~s~vp~~S~~~~----~----~~-~~~~--~~~~i~~~v~~~g~~Ii~~ 234 (323)
T PLN00106 167 DVVRANTFVAEKKGLDPADVDVP-VVGGHAGITILPLLSQATP----K----VS-FTDE--EIEALTKRIQNGGTEVVEA 234 (323)
T ss_pred hHHHHHHHHHHHhCCChhheEEE-EEEeCCCccEeeehhccee----c----cc-CCHH--HHHHHHHHHHHHHHHHHhC
Confidence 99999999999999999999987 579997 599999999975 2 22 2222 2578999999999999998
Q ss_pred c-C-CcchHHHHHHHHHHHHHHHcCC-CCCcEEEEEEeecCCCCCCCCeEEEEeEEEe-CCeEEEecCC-CCCHHHHHHH
Q 019990 239 R-K-LSSALSAASSACDHIRDWVLGT-PKGTWVSMGVYSDGSYGIPEGLIYSFPVTCE-KGEWSIVKGL-KVDEFSRAKM 313 (332)
Q Consensus 239 ~-g-~~~~~~~a~a~~~~i~~~~~~~-~~~~i~~~~v~~~g~yg~~~~~~~s~Pv~~~-~G~~~~~~~~-~l~~~E~~~l 313 (332)
| | .++++++|.++++++.+++.++ +++.++|+| +.+++| ..++|||+||++| +|++++++ + +|+++|+++|
T Consensus 235 k~~kg~t~~~~a~a~~~ii~ail~~~~~~~~v~~~s-~~~~~~--~~~v~~s~P~~ig~~Gv~~i~~-~~~L~~~E~~~l 310 (323)
T PLN00106 235 KAGAGSATLSMAYAAARFADACLRGLNGEADVVECS-YVQSEV--TELPFFASKVRLGRNGVEEVLG-LGPLSEYEQKGL 310 (323)
T ss_pred ccCCCCchHHHHHHHHHHHHHHHhccCCCceEEEEE-EECccc--CCceEEEEEEEEcCCeeEEEcC-CCCCCHHHHHHH
Confidence 5 2 3556788999999888877742 256899999 666665 2349999999999 99999996 8 9999999999
Q ss_pred HHHHHHHHHHHH
Q 019990 314 DATAEELAEEKT 325 (332)
Q Consensus 314 ~~s~~~i~~~~~ 325 (332)
++|++.|++.++
T Consensus 311 ~~S~~~i~~~~~ 322 (323)
T PLN00106 311 EALKPELKASIE 322 (323)
T ss_pred HHHHHHHHHHhh
Confidence 999999998875
|
|
| >PRK05086 malate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-53 Score=391.83 Aligned_cols=298 Identities=22% Similarity=0.315 Sum_probs=254.9
Q ss_pred cEEEEEcCCChhHHHHHHHHHh-cccCCCCCCeEEEEEecccchhhhhhhHhhhhhhccCCccceEE--eCCHHHHhCCC
Q 019990 6 LRVLVTGAAGQIGYALVPMIAR-GIMLGPDQPVILHMLDIEPAAEALNGVKMELIDAAFPLLKGVVA--TTDVVEACKDV 82 (332)
Q Consensus 6 ~kI~VtGaaG~IGs~l~~~L~~-~~~~~~~~~~~i~l~D~~~~~~~~~~~~~dl~~~~~~~~~~v~~--~~~~~~a~~~a 82 (332)
|||+|+||+|.||+++++.|.. .+.. .+++++|+++ ...+..+|+.|.. ....+.. ..+++++++++
T Consensus 1 ~KI~IIGAsG~VG~aia~~l~~~~~~~-----~el~L~d~~~---~~~g~alDl~~~~--~~~~i~~~~~~d~~~~l~~~ 70 (312)
T PRK05086 1 MKVAVLGAAGGIGQALALLLKTQLPAG-----SELSLYDIAP---VTPGVAVDLSHIP--TAVKIKGFSGEDPTPALEGA 70 (312)
T ss_pred CEEEEECCCCHHHHHHHHHHHcCCCCc-----cEEEEEecCC---CCcceehhhhcCC--CCceEEEeCCCCHHHHcCCC
Confidence 5899999889999999998865 4443 3899999863 2456778887741 1123332 35667899999
Q ss_pred cEEEEecCCCCCCCCChhHHHhhhHHHHHHHHHHHHhhcCCCcEEEEEeCChhhHHHHHH----HHCCCCCCCcEEEeec
Q 019990 83 NIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEKHAAPNCKVLVVANPANTNALILK----EFAPSIPAKNITCLTR 158 (332)
Q Consensus 83 DiVi~~ag~~~~~~~~~~~~~~~N~~~~~~i~~~i~~~~~~~~~viv~snp~~~~~~~~~----~~~~~~~~~~i~~~t~ 158 (332)
|+||+++|.+++++++|.+++..|+++++++++++++++ |+++++++|||+|+|+++++ ++ +++|++|++|.|.
T Consensus 71 DiVIitaG~~~~~~~~R~dll~~N~~i~~~ii~~i~~~~-~~~ivivvsNP~D~~t~~~~~~~~~~-sg~p~~rvig~~~ 148 (312)
T PRK05086 71 DVVLISAGVARKPGMDRSDLFNVNAGIVKNLVEKVAKTC-PKACIGIITNPVNTTVAIAAEVLKKA-GVYDKNKLFGVTT 148 (312)
T ss_pred CEEEEcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhC-CCeEEEEccCchHHHHHHHHHHHHHh-cCCCHHHEEeeec
Confidence 999999999999999999999999999999999999997 89999999999999999987 65 7899999888888
Q ss_pred ccHHHHHHHHHHHcCCCCCCeeeeEEEecCCC-ceeecccCcccccCCCCcchhhhccccccchhHHHHHHHhhHHHHHH
Q 019990 159 LDHNRAMGQISERLKVHVSDVKNVIIWGNHSS-TQYPDVNHATVTTSKGEKPVREAVADDNWLNTEFITTVQQRGAAIIK 237 (332)
Q Consensus 159 l~~~r~~~~~a~~~~v~~~~v~~~~V~G~hg~-~~v~~~s~~~v~~~~~~~p~~~~~~~~~~~~~~~~~~v~~~~~~i~~ 237 (332)
||+.|+++++|+++|+++++|+.+ ||||||+ ++||+||++ +|.|+.+ + .++++.+++++++++|++
T Consensus 149 Lds~R~~~~ia~~l~~~~~~v~~~-v~GeHg~~s~~p~~S~~------~g~~l~~----~--~~~~i~~~v~~~g~~ii~ 215 (312)
T PRK05086 149 LDVIRSETFVAELKGKQPGEVEVP-VIGGHSGVTILPLLSQV------PGVSFTE----Q--EVADLTKRIQNAGTEVVE 215 (312)
T ss_pred HHHHHHHHHHHHHhCCChhheEEE-EEEecCCCceecccccc------CCccCCH----H--HHHHHHHHHHHHHHHHHh
Confidence 999999999999999999999976 6999986 999999997 4677732 2 257899999999999999
Q ss_pred hc--CCcchHHHHHHHHHHHHHHHcC-CCCCcEEEEEEeecCCCCCCCCeEEEEeEEEe-CCeEEEecCC-CCCHHHHHH
Q 019990 238 AR--KLSSALSAASSACDHIRDWVLG-TPKGTWVSMGVYSDGSYGIPEGLIYSFPVTCE-KGEWSIVKGL-KVDEFSRAK 312 (332)
Q Consensus 238 ~~--g~~~~~~~a~a~~~~i~~~~~~-~~~~~i~~~~v~~~g~yg~~~~~~~s~Pv~~~-~G~~~~~~~~-~l~~~E~~~ 312 (332)
.| ++++++++|.++++++.+++.+ .++++++|++ +.+|+ |. .++|||+||++| +|++++++ + +|+++|+++
T Consensus 216 ~k~~~g~t~~~~a~a~~~~v~ai~~~~~~~~~v~~~~-~~~~~-g~-~~v~~s~P~~ig~~Gv~~i~~-~~~L~~~E~~~ 291 (312)
T PRK05086 216 AKAGGGSATLSMGQAAARFGLSLVRALQGEQGVVECA-YVEGD-GK-YARFFAQPVLLGKNGVEERLP-IGTLSAFEQNA 291 (312)
T ss_pred cccCCCCchhhHHHHHHHHHHHHHhcCCCCCcEEEEE-EEecc-CC-cceEEEEEEEEcCCeeEEEcC-CCCCCHHHHHH
Confidence 88 2355678899999988888754 3467899976 77876 76 789999999999 99999996 7 999999999
Q ss_pred HHHHHHHHHHHHHHHhhhhC
Q 019990 313 MDATAEELAEEKTLAYSCLN 332 (332)
Q Consensus 313 l~~s~~~i~~~~~~~~~~~~ 332 (332)
|++|++.|++.++++++|+.
T Consensus 292 l~~s~~~i~~~~~~g~~~~~ 311 (312)
T PRK05086 292 LEGMLDTLKKDIALGEEFVN 311 (312)
T ss_pred HHHHHHHHHHHHHHHHHhhc
Confidence 99999999999999999963
|
|
| >PRK06223 malate dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-51 Score=379.93 Aligned_cols=298 Identities=25% Similarity=0.393 Sum_probs=259.2
Q ss_pred CcEEEEEcCCChhHHHHHHHHHhcccCCCCCCeEEEEEecccchhhhhhhHhhhhhhccCCc--cceEEeCCHHHHhCCC
Q 019990 5 PLRVLVTGAAGQIGYALVPMIARGIMLGPDQPVILHMLDIEPAAEALNGVKMELIDAAFPLL--KGVVATTDVVEACKDV 82 (332)
Q Consensus 5 ~~kI~VtGaaG~IGs~l~~~L~~~~~~~~~~~~~i~l~D~~~~~~~~~~~~~dl~~~~~~~~--~~v~~~~~~~~a~~~a 82 (332)
|+||+|+|| |.+|++++..++..++. +++|+|+++ +++++..+|+.+...... ..++.+++. +++++|
T Consensus 2 ~~KI~VIGa-G~vG~~ia~~la~~~~~------ev~L~D~~~--~~~~~~~~dl~~~~~~~~~~~~i~~~~d~-~~~~~a 71 (307)
T PRK06223 2 RKKISIIGA-GNVGATLAHLLALKELG------DVVLFDIVE--GVPQGKALDIAEAAPVEGFDTKITGTNDY-EDIAGS 71 (307)
T ss_pred CCEEEEECC-CHHHHHHHHHHHhCCCe------EEEEEECCC--chhHHHHHHHHhhhhhcCCCcEEEeCCCH-HHHCCC
Confidence 579999995 99999999999887651 899999964 467788888877643322 244444554 679999
Q ss_pred cEEEEecCCCCCCCCChhHHHhhhHHHHHHHHHHHHhhcCCCcEEEEEeCChhhHHHHHHHHCCCCCCCcEEEe-ecccH
Q 019990 83 NIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEKHAAPNCKVLVVANPANTNALILKEFAPSIPAKNITCL-TRLDH 161 (332)
Q Consensus 83 DiVi~~ag~~~~~~~~~~~~~~~N~~~~~~i~~~i~~~~~~~~~viv~snp~~~~~~~~~~~~~~~~~~~i~~~-t~l~~ 161 (332)
|+||+++|.|++++++|.+.+..|++.++++++.+++++ |+++++++|||+|.++++++++ +++|+++++|. |.+|+
T Consensus 72 DiVii~~~~p~~~~~~r~~~~~~n~~i~~~i~~~i~~~~-~~~~viv~tNP~d~~~~~~~~~-s~~~~~~viG~gt~lds 149 (307)
T PRK06223 72 DVVVITAGVPRKPGMSRDDLLGINAKIMKDVAEGIKKYA-PDAIVIVVTNPVDAMTYVALKE-SGFPKNRVIGMAGVLDS 149 (307)
T ss_pred CEEEECCCCCCCcCCCHHHHHHHHHHHHHHHHHHHHHHC-CCeEEEEecCcHHHHHHHHHHH-hCCCcccEEEeCCCcHH
Confidence 999999999999999999999999999999999999998 8889999999999999999998 79999996555 69999
Q ss_pred HHHHHHHHHHcCCCCCCeeeeEEEecCCCceeecccCcccccCCCCcchhhhccccccchhHHHHHHHhhHHHHHHh--c
Q 019990 162 NRAMGQISERLKVHVSDVKNVIIWGNHSSTQYPDVNHATVTTSKGEKPVREAVADDNWLNTEFITTVQQRGAAIIKA--R 239 (332)
Q Consensus 162 ~r~~~~~a~~~~v~~~~v~~~~V~G~hg~~~v~~~s~~~v~~~~~~~p~~~~~~~~~~~~~~~~~~v~~~~~~i~~~--~ 239 (332)
.|+++++|+++++++++|++++ +|+||++++|+||++++ +|.|+.+++.+ +| .+++.+.+++++++|++. |
T Consensus 150 ~r~~~~la~~l~v~~~~v~~~v-iGehg~s~~p~~S~~~v----~g~~~~~~~~~-~~-~~~l~~~v~~~~~~ii~~~~k 222 (307)
T PRK06223 150 ARFRTFIAEELNVSVKDVTAFV-LGGHGDSMVPLVRYSTV----GGIPLEDLLSK-EK-LDEIVERTRKGGAEIVGLLKT 222 (307)
T ss_pred HHHHHHHHHHhCcChhhCcccE-EcCCCCcceEchhhCEE----CCEEHHHhCCh-HH-HHHHHHHHHHHHHHHHhhccc
Confidence 9999999999999999999875 79999999999999999 99999998543 44 578999999999999997 5
Q ss_pred CCcchHHHHHHHHHHHHHHHcCCCCCcEEEEEEeecCCCCCCCCeEEEEeEEEe-CCeEEEecCCCCCHHHHHHHHHHHH
Q 019990 240 KLSSALSAASSACDHIRDWVLGTPKGTWVSMGVYSDGSYGIPEGLIYSFPVTCE-KGEWSIVKGLKVDEFSRAKMDATAE 318 (332)
Q Consensus 240 g~~~~~~~a~a~~~~i~~~~~~~~~~~i~~~~v~~~g~yg~~~~~~~s~Pv~~~-~G~~~~~~~~~l~~~E~~~l~~s~~ 318 (332)
|++ +++.|.++++++.+++. +++.++|++++++|+||+ +++|||+||+++ +|++++++ ++||++|+++|++|++
T Consensus 223 g~t-~~~~A~~~~~ii~ail~--~~~~~~~~~v~~~g~yg~-~~~~~s~P~~i~~~Gv~~i~~-~~l~~~e~~~l~~s~~ 297 (307)
T PRK06223 223 GSA-YYAPAASIAEMVEAILK--DKKRVLPCSAYLEGEYGV-KDVYVGVPVKLGKNGVEKIIE-LELDDEEKAAFDKSVE 297 (307)
T ss_pred CCh-hHHHHHHHHHHHHHHHc--CCCcEEEEEEEecCcCCC-CCeEEEeEEEEeCCeEEEEeC-CCCCHHHHHHHHHHHH
Confidence 544 56678888887777665 458999999999999999 899999999999 99999985 9999999999999999
Q ss_pred HHHHHHHH
Q 019990 319 ELAEEKTL 326 (332)
Q Consensus 319 ~i~~~~~~ 326 (332)
.|++.++.
T Consensus 298 ~l~~~~~~ 305 (307)
T PRK06223 298 AVKKLIEA 305 (307)
T ss_pred HHHHHHHh
Confidence 99998875
|
|
| >cd01339 LDH-like_MDH L-lactate dehydrogenase-like malate dehydrogenase proteins | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-51 Score=378.56 Aligned_cols=293 Identities=27% Similarity=0.406 Sum_probs=254.7
Q ss_pred EEEEcCCChhHHHHHHHHHhcccCCCCCCeEEEEEecccchhhhhhhHhhhhhhccCCc--cceEEeCCHHHHhCCCcEE
Q 019990 8 VLVTGAAGQIGYALVPMIARGIMLGPDQPVILHMLDIEPAAEALNGVKMELIDAAFPLL--KGVVATTDVVEACKDVNIA 85 (332)
Q Consensus 8 I~VtGaaG~IGs~l~~~L~~~~~~~~~~~~~i~l~D~~~~~~~~~~~~~dl~~~~~~~~--~~v~~~~~~~~a~~~aDiV 85 (332)
|+|+| +|.+|+.++..|+..++. +|+|+|+++ +++.+..+|+.+...... ..++.+.+ ++++++||+|
T Consensus 1 I~IIG-aG~vG~~ia~~la~~~l~------eV~L~Di~e--~~~~g~~~dl~~~~~~~~~~~~I~~t~d-~~~l~dADiV 70 (300)
T cd01339 1 ISIIG-AGNVGATLAQLLALKELG------DVVLLDIVE--GLPQGKALDISQAAPILGSDTKVTGTND-YEDIAGSDVV 70 (300)
T ss_pred CEEEC-CCHHHHHHHHHHHhCCCc------EEEEEeCCC--cHHHHHHHHHHHhhhhcCCCeEEEEcCC-HHHhCCCCEE
Confidence 68999 599999999999887752 899999975 466777788877542222 34554455 5779999999
Q ss_pred EEecCCCCCCCCChhHHHhhhHHHHHHHHHHHHhhcCCCcEEEEEeCChhhHHHHHHHHCCCCCCCcEEEe-ecccHHHH
Q 019990 86 VMVGGFPRKEGMERKDVMSKNVSIYKAQASALEKHAAPNCKVLVVANPANTNALILKEFAPSIPAKNITCL-TRLDHNRA 164 (332)
Q Consensus 86 i~~ag~~~~~~~~~~~~~~~N~~~~~~i~~~i~~~~~~~~~viv~snp~~~~~~~~~~~~~~~~~~~i~~~-t~l~~~r~ 164 (332)
|+++|.|++++++|.+.+..|.++++++++.+++++ |+++++++|||++.++++++++ +++|++|++|. |.+|+.|+
T Consensus 71 Iit~g~p~~~~~~r~e~~~~n~~i~~~i~~~i~~~~-p~~~iIv~sNP~di~t~~~~~~-s~~~~~rviGlgt~lds~r~ 148 (300)
T cd01339 71 VITAGIPRKPGMSRDDLLGTNAKIVKEVAENIKKYA-PNAIVIVVTNPLDVMTYVAYKA-SGFPRNRVIGMAGVLDSARF 148 (300)
T ss_pred EEecCCCCCcCCCHHHHHHHHHHHHHHHHHHHHHHC-CCeEEEEecCcHHHHHHHHHHH-hCCCHHHEEEecchHHHHHH
Confidence 999999999999999999999999999999999998 8889999999999999999997 78999996555 58999999
Q ss_pred HHHHHHHcCCCCCCeeeeEEEecCCCceeecccCcccccCCCCcchhhhccccccchhHHHHHHHhhHHHHHHhc--CCc
Q 019990 165 MGQISERLKVHVSDVKNVIIWGNHSSTQYPDVNHATVTTSKGEKPVREAVADDNWLNTEFITTVQQRGAAIIKAR--KLS 242 (332)
Q Consensus 165 ~~~~a~~~~v~~~~v~~~~V~G~hg~~~v~~~s~~~v~~~~~~~p~~~~~~~~~~~~~~~~~~v~~~~~~i~~~~--g~~ 242 (332)
++++|+++++++.+|++++ +|+||++++|+||++++ +|+|+.+++.++. ++++.+++++++++|++.| |++
T Consensus 149 ~~~la~~l~v~~~~v~~~v-~G~hg~~~~~~~s~~~v----~g~~~~~~~~~~~--~~~~~~~v~~~~~~ii~~k~~g~t 221 (300)
T cd01339 149 RYFIAEELGVSVKDVQAMV-LGGHGDTMVPLPRYSTV----GGIPLTELITKEE--IDEIVERTRNGGAEIVNLLKTGSA 221 (300)
T ss_pred HHHHHHHhCCCccceEEEE-EeCCCCcceecceecEE----CCEEHHHhcChHH--HHHHHHHHHHHHHHHHhhcCCCch
Confidence 9999999999999999875 79999999999999999 9999999876653 5789999999999999987 544
Q ss_pred chHHHHHHHHHHHHHHHcCCCCCcEEEEEEeecCCCCCCCCeEEEEeEEEe-CCeEEEecCCCCCHHHHHHHHHHHHHHH
Q 019990 243 SALSAASSACDHIRDWVLGTPKGTWVSMGVYSDGSYGIPEGLIYSFPVTCE-KGEWSIVKGLKVDEFSRAKMDATAEELA 321 (332)
Q Consensus 243 ~~~~~a~a~~~~i~~~~~~~~~~~i~~~~v~~~g~yg~~~~~~~s~Pv~~~-~G~~~~~~~~~l~~~E~~~l~~s~~~i~ 321 (332)
++++|+++++++.+++. +++.++|+|++++|+||++ ++|||+||+++ +|++++++ ++||++|+++|++|++.|+
T Consensus 222 -~~~~a~~~~~i~~ail~--~~~~i~~~s~~~~g~yg~~-~~~~s~P~~ig~~G~~~~~~-l~l~~~E~~~l~~s~~~l~ 296 (300)
T cd01339 222 -YYAPAAAIAEMVEAILK--DKKRVLPCSAYLEGEYGIK-DIFVGVPVVLGKNGVEKIIE-LDLTDEEKEAFDKSVESVK 296 (300)
T ss_pred -hHHHHHHHHHHHHHHHc--CCCcEEEEEEEeccccCCC-CeEEEEEEEEeCCeEEEEeC-CCCCHHHHHHHHHHHHHHH
Confidence 46678889887766555 4689999999999999995 99999999999 99999985 9999999999999999999
Q ss_pred HHH
Q 019990 322 EEK 324 (332)
Q Consensus 322 ~~~ 324 (332)
+.+
T Consensus 297 ~~~ 299 (300)
T cd01339 297 ELI 299 (300)
T ss_pred HHh
Confidence 865
|
Members of this subfamily have an LDH-like structure and an MDH enzymatic activity. Some members, like MJ0490 from Methanococcus jannaschii, exhibit both MDH and LDH activities. Tetrameric MDHs, including those from phototrophic bacteria, are more similar to LDHs than to other MDHs. LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH-like MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenas |
| >KOG1494 consensus NAD-dependent malate dehydrogenase [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.4e-48 Score=333.89 Aligned_cols=301 Identities=26% Similarity=0.336 Sum_probs=252.8
Q ss_pred CCcEEEEEcCCChhHHHHHHHHHhcccCCCCCCeEEEEEecccchhhhhhhHhhhhhhccCC-ccceEEeCCHHHHhCCC
Q 019990 4 NPLRVLVTGAAGQIGYALVPMIARGIMLGPDQPVILHMLDIEPAAEALNGVKMELIDAAFPL-LKGVVATTDVVEACKDV 82 (332)
Q Consensus 4 ~~~kI~VtGaaG~IGs~l~~~L~~~~~~~~~~~~~i~l~D~~~~~~~~~~~~~dl~~~~~~~-~~~v~~~~~~~~a~~~a 82 (332)
++.||+|.||+|-||+.|..+|+.+.+.+ ++.|||+. ...|...||.|++... ...+....+++++++++
T Consensus 27 ~~~KVAvlGAaGGIGQPLSLLlK~np~Vs-----~LaLYDi~----~~~GVaaDlSHI~T~s~V~g~~g~~~L~~al~~a 97 (345)
T KOG1494|consen 27 RGLKVAVLGAAGGIGQPLSLLLKLNPLVS-----ELALYDIA----NTPGVAADLSHINTNSSVVGFTGADGLENALKGA 97 (345)
T ss_pred CcceEEEEecCCccCccHHHHHhcCcccc-----eeeeeecc----cCCcccccccccCCCCceeccCChhHHHHHhcCC
Confidence 46899999999999999999998877654 89999996 4678999999987543 24555566899999999
Q ss_pred cEEEEecCCCCCCCCChhHHHhhhHHHHHHHHHHHHhhcCCCcEEEEEeCChhhHHHHHHHHC---CCCCCCcEEEeecc
Q 019990 83 NIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEKHAAPNCKVLVVANPANTNALILKEFA---PSIPAKNITCLTRL 159 (332)
Q Consensus 83 DiVi~~ag~~~~~~~~~~~~~~~N~~~~~~i~~~i~~~~~~~~~viv~snp~~~~~~~~~~~~---~~~~~~~i~~~t~l 159 (332)
|+||+.||+||+||++|+|++..|+.++++++.++.++| |++++.++|||+|...+++.+.. ..|+|++++|.|+|
T Consensus 98 dvVvIPAGVPRKPGMTRDDLFn~NAgIv~~l~~aia~~c-P~A~i~vIsNPVNstVPIaaevlKk~G~ydpkklfGVTtL 176 (345)
T KOG1494|consen 98 DVVVIPAGVPRKPGMTRDDLFNINAGIVKTLAAAIAKCC-PNALILVISNPVNSTVPIAAEVLKKAGVYDPKKLFGVTTL 176 (345)
T ss_pred CEEEecCCCCCCCCCcHHHhhhcchHHHHHHHHHHHhhC-ccceeEeecCcccccchHHHHHHHHcCCCCccceeceehh
Confidence 999999999999999999999999999999999999999 89999999999998777664432 45899999999999
Q ss_pred cHHHHHHHHHHHcCCCCCC-eeeeEEEecCC-CceeecccCcccccCCCCcchhhhccccccchhHHHHHHHhhHHHHHH
Q 019990 160 DHNRAMGQISERLKVHVSD-VKNVIIWGNHS-STQYPDVNHATVTTSKGEKPVREAVADDNWLNTEFITTVQQRGAAIIK 237 (332)
Q Consensus 160 ~~~r~~~~~a~~~~v~~~~-v~~~~V~G~hg-~~~v~~~s~~~v~~~~~~~p~~~~~~~~~~~~~~~~~~v~~~~~~i~~ 237 (332)
|..|.++++++..+++|.. ++. +|+|+|. .+.+|++|+... ...+ .++ ..+.|+.++|++|.|+++
T Consensus 177 DvVRA~tFv~~~~~~~p~~~v~V-PVIGGHaG~TIlPLlSQ~~p--------~~~~-~~~--~~~~Lt~RiQ~gGtEVV~ 244 (345)
T KOG1494|consen 177 DVVRANTFVAEVLNLDPAEDVDV-PVIGGHAGITIIPLLSQCKP--------PFRF-TDD--EIEALTHRIQNGGTEVVK 244 (345)
T ss_pred hhhhHHHHHHHHhCCCchhcCCc-ceecCcCCceEeeecccCCC--------cccC-CHH--HHHHHHHHHHhCCceEEE
Confidence 9999999999999999944 774 5789996 799999999876 1111 121 357899999999999999
Q ss_pred hcC--CcchHHHHHHHHHHHHHHH---cCCCCCcEEEEEEeecCCCCCCCCeEEEEeEEEe-CCeEEEecCCCCCHHHHH
Q 019990 238 ARK--LSSALSAASSACDHIRDWV---LGTPKGTWVSMGVYSDGSYGIPEGLIYSFPVTCE-KGEWSIVKGLKVDEFSRA 311 (332)
Q Consensus 238 ~~g--~~~~~~~a~a~~~~i~~~~---~~~~~~~i~~~~v~~~g~yg~~~~~~~s~Pv~~~-~G~~~~~~~~~l~~~E~~ 311 (332)
.|. .+.++|+|||.+++..+.+ .|+ ++.+.+..|+++. +++ .||+.|+++| +|++++..-.+||++|++
T Consensus 245 AKaGaGSATLSMAyAga~fa~s~lrgl~G~-~~v~ecafV~s~~-~~~---~fFaspv~Lg~~Gv~~v~~l~~lsd~E~~ 319 (345)
T KOG1494|consen 245 AKAGAGSATLSMAYAGAKFADSLLRGLNGD-EDVVECAFVASPV-TEL---PFFATPVTLGKKGVEEVLGLGKLSDYEEK 319 (345)
T ss_pred eccCCCchhhhHHHHHHHHHHHHHHHhCCC-CCeEEEeEEeccc-cCc---cceeceEEecCCceeeecCCCccCHHHHH
Confidence 996 4777999999888655444 453 4445544577764 344 6999999999 999999975589999999
Q ss_pred HHHHHHHHHHHHHHHHhhhh
Q 019990 312 KMDATAEELAEEKTLAYSCL 331 (332)
Q Consensus 312 ~l~~s~~~i~~~~~~~~~~~ 331 (332)
.|+.+..+|++.|+++.+|.
T Consensus 320 ~l~~~~~eLk~sI~KGv~F~ 339 (345)
T KOG1494|consen 320 ALEAAKPELKKSIEKGVTFV 339 (345)
T ss_pred HHHHHHHHHHHHHHhhHHHH
Confidence 99999999999999999985
|
|
| >cd00650 LDH_MDH_like NAD-dependent, lactate dehydrogenase-like, 2-hydroxycarboxylate dehydrogenase family | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-46 Score=338.67 Aligned_cols=258 Identities=33% Similarity=0.514 Sum_probs=230.1
Q ss_pred EEEEcCCChhHHHHHHHHHhcc--cCCCCCCeEEEEEecccchhhhhhhHhhhhhhccCC-ccceEEeCCHHHHhCCCcE
Q 019990 8 VLVTGAAGQIGYALVPMIARGI--MLGPDQPVILHMLDIEPAAEALNGVKMELIDAAFPL-LKGVVATTDVVEACKDVNI 84 (332)
Q Consensus 8 I~VtGaaG~IGs~l~~~L~~~~--~~~~~~~~~i~l~D~~~~~~~~~~~~~dl~~~~~~~-~~~v~~~~~~~~a~~~aDi 84 (332)
|+|+||+|.+|++++..|+..+ .. .+++|+|+++ +++++..+|+.|...+. ..+++.++|+++++++||+
T Consensus 1 I~IIGagG~vG~~ia~~l~~~~~~~~-----~el~L~D~~~--~~l~~~~~dl~~~~~~~~~~~i~~~~d~~~~~~~aDi 73 (263)
T cd00650 1 IAVIGAGGNVGPALAFGLADGSVLLA-----IELVLYDIDE--EKLKGVAMDLQDAVEPLADIKVSITDDPYEAFKDADV 73 (263)
T ss_pred CEEECCCChHHHHHHHHHHhCCCCcc-----eEEEEEeCCc--ccchHHHHHHHHhhhhccCcEEEECCchHHHhCCCCE
Confidence 6899977999999999998877 32 3999999965 57888999998876444 3466666777899999999
Q ss_pred EEEecCCCCCCCCChhHHHhhhHHHHHHHHHHHHhhcCCCcEEEEEeCChhhHHHHHHHHCCCCCCCcEEEeecccHHHH
Q 019990 85 AVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEKHAAPNCKVLVVANPANTNALILKEFAPSIPAKNITCLTRLDHNRA 164 (332)
Q Consensus 85 Vi~~ag~~~~~~~~~~~~~~~N~~~~~~i~~~i~~~~~~~~~viv~snp~~~~~~~~~~~~~~~~~~~i~~~t~l~~~r~ 164 (332)
||+++|.++++|++|.+.+..|+++++++++.+++++ |+++++++|||+|.++++++++ +++|++|++|.+.+|+.|+
T Consensus 74 Vv~t~~~~~~~g~~r~~~~~~n~~i~~~i~~~i~~~~-p~a~~i~~tNP~d~~t~~~~~~-sg~~~~kviG~~~ld~~r~ 151 (263)
T cd00650 74 VIITAGVGRKPGMGRLDLLKRNVPIVKEIGDNIEKYS-PDAWIIVVSNPVDIITYLVWRY-SGLPKEKVIGLGTLDPIRF 151 (263)
T ss_pred EEECCCCCCCcCCCHHHHHHHHHHHHHHHHHHHHHHC-CCeEEEEecCcHHHHHHHHHHH-hCCCchhEEEeecchHHHH
Confidence 9999999999999999999999999999999999998 9999999999999999999998 7899999766666999999
Q ss_pred HHHHHHHcCCCCCCeeeeEEEecCCCceeecccCcccccCCCCcchhhhccccccchhHHHHHHHhhHHHHHHhcCCcch
Q 019990 165 MGQISERLKVHVSDVKNVIIWGNHSSTQYPDVNHATVTTSKGEKPVREAVADDNWLNTEFITTVQQRGAAIIKARKLSSA 244 (332)
Q Consensus 165 ~~~~a~~~~v~~~~v~~~~V~G~hg~~~v~~~s~~~v~~~~~~~p~~~~~~~~~~~~~~~~~~v~~~~~~i~~~~g~~~~ 244 (332)
++.+|+++++++++|+.+ |||+||++++|+||+++
T Consensus 152 ~~~la~~l~v~~~~v~~~-v~G~hg~~~~~~~s~~~-------------------------------------------- 186 (263)
T cd00650 152 RRILAEKLGVDPDDVKVY-ILGEHGGSQVPDWSTVR-------------------------------------------- 186 (263)
T ss_pred HHHHHHHhCCCccceEEE-EEEcCCCceEeccccch--------------------------------------------
Confidence 999999999999999965 69999999999999743
Q ss_pred HHHHHHHHHHHHHHHcCCCCCcEEEEEEeecCCCCCCCCeEEEEeEEEe-CCeEEEecCCCCCHHHHHHHHHHHHHHHHH
Q 019990 245 LSAASSACDHIRDWVLGTPKGTWVSMGVYSDGSYGIPEGLIYSFPVTCE-KGEWSIVKGLKVDEFSRAKMDATAEELAEE 323 (332)
Q Consensus 245 ~~~a~a~~~~i~~~~~~~~~~~i~~~~v~~~g~yg~~~~~~~s~Pv~~~-~G~~~~~~~~~l~~~E~~~l~~s~~~i~~~ 323 (332)
+|.++++++.+++.+ ++.++|++++++|+||+++++|||+||+++ +|++++++ ++|+++|+++|++|++.++..
T Consensus 187 --~a~~~~~ii~ai~~~--~~~~~~v~v~~~g~ygi~~~~~~s~P~~i~~~Gi~~~~~-~~l~~~e~~~l~~s~~~~~~~ 261 (263)
T cd00650 187 --IATSIADLIRSLLND--EGEILPVGVRNNGQIGIPDDVVVSVPCIVGKNGVEEPIE-VGLTDFELEKLQKSADTLKKE 261 (263)
T ss_pred --HHHHHHHHHHHHHcC--CCEEEEEEEEeCCccCCcCCEEEEEEEEEeCCceEEEec-CCCCHHHHHHHHHHHHHHHHH
Confidence 467788878776664 589999999999999988999999999999 99999996 999999999999999999876
Q ss_pred H
Q 019990 324 K 324 (332)
Q Consensus 324 ~ 324 (332)
+
T Consensus 262 ~ 262 (263)
T cd00650 262 L 262 (263)
T ss_pred h
Confidence 5
|
Members of this family include ubiquitous enzymes like L-lactate dehydrogenases (LDH), L-2-hydroxyisocaproate dehydrogenases, and some malate dehydrogenases (MDH). LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH/MDH-like proteins are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains |
| >PF02866 Ldh_1_C: lactate/malate dehydrogenase, alpha/beta C-terminal domain Prosite entry for lactate dehydrogenase Prosite entry for malate dehydrogenase; InterPro: IPR022383 L-lactate dehydrogenases are metabolic enzymes which catalyse the conversion of L-lactate to pyruvate, the last step in anaerobic glycolysis [] | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.7e-37 Score=258.01 Aligned_cols=167 Identities=31% Similarity=0.431 Sum_probs=152.7
Q ss_pred ecccHHHHHHHHHHHcCCCCCCeeeeEEEecCCCceeecccCcccccCCCCcchhhhccc----cccchhHHHHHHHhhH
Q 019990 157 TRLDHNRAMGQISERLKVHVSDVKNVIIWGNHSSTQYPDVNHATVTTSKGEKPVREAVAD----DNWLNTEFITTVQQRG 232 (332)
Q Consensus 157 t~l~~~r~~~~~a~~~~v~~~~v~~~~V~G~hg~~~v~~~s~~~v~~~~~~~p~~~~~~~----~~~~~~~~~~~v~~~~ 232 (332)
|.||+.|+++++|+++|++|.+++.+ |||+||+++||+||++++ +|.|+.++... .+|..+++.+++++++
T Consensus 1 T~LDs~R~~~~la~~l~v~~~~v~~~-ViGeHg~s~~~~~S~~~v----~g~pl~~~~~~~~~~~~~~~~~l~~~v~~~g 75 (174)
T PF02866_consen 1 TMLDSARFRYFLAEKLGVNPSSVNAY-VIGEHGDSQVPDWSHAKV----GGVPLLSYAKPSGKLSEEELEELTERVRKAG 75 (174)
T ss_dssp THHHHHHHHHHHHHHHTSGGGGEEEE-EEBSSSTTEEEEGGGEEE----TTEEHHHHHHTTTSSSHHHHHHHHHHHHHHH
T ss_pred CccHHHHHHHHHHHHHCcCccceEEE-EEecCCcceeeeeecccc----cccccccccccccchhHHhhhccccccEecc
Confidence 67999999999999999999999986 689999999999999999 99999877543 2567789999999999
Q ss_pred HHHHHhcCCcchHHHHHHHHHHHHHHHcCCCCCcEEEEEEeecCCCCCCCC-eEEEEeEEEe-CCeEEEecCCCCCHHHH
Q 019990 233 AAIIKARKLSSALSAASSACDHIRDWVLGTPKGTWVSMGVYSDGSYGIPEG-LIYSFPVTCE-KGEWSIVKGLKVDEFSR 310 (332)
Q Consensus 233 ~~i~~~~g~~~~~~~a~a~~~~i~~~~~~~~~~~i~~~~v~~~g~yg~~~~-~~~s~Pv~~~-~G~~~~~~~~~l~~~E~ 310 (332)
++|++.|++++++++|+++++++.+++.+ .+.++|+|++++|+||++.+ +|||+||++| +|+++++++++||++|+
T Consensus 76 ~~ii~~k~g~t~~s~A~a~~~~v~ail~~--~~~i~~~sv~~~g~yg~~~~~v~~s~P~~ig~~Gv~~i~~~~~L~~~E~ 153 (174)
T PF02866_consen 76 YEIIKAKGGSTSYSIAAAAARIVEAILKD--ERRILPVSVYLDGEYGIPDGCVYFSVPVVIGKNGVEKIVEDLPLSEEEQ 153 (174)
T ss_dssp HHHHHHHSSSCHHHHHHHHHHHHHHHHTT--HTEEEEEEEEEESGGGEESSSEEEEEEEEEETTEEEEEECSBSSTHHHH
T ss_pred ceeeeeccccCcCCHHHHHHHHHHHHhhc--ccccccceeccccccCcccccceecceEEEcCCeeEEEeCCCCCCHHHH
Confidence 99999996677789999999999888775 47899999999999999655 9999999999 99999996699999999
Q ss_pred HHHHHHHHHHHHHHHHHhhh
Q 019990 311 AKMDATAEELAEEKTLAYSC 330 (332)
Q Consensus 311 ~~l~~s~~~i~~~~~~~~~~ 330 (332)
++|++|++.|++.++.+++|
T Consensus 154 ~~l~~sa~~l~~~i~~~~~f 173 (174)
T PF02866_consen 154 EKLKESAKELKKEIEKGLEF 173 (174)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhc
Confidence 99999999999999999987
|
L-lactate dehydrogenase is also found as a lens crystallin in bird and crocodile eyes. L-2-hydroxyisocaproate dehydrogenases are also members of the family. Malate dehydrogenases catalyse the interconversion of malate to oxaloacetate []. The enzyme participates in the citric acid cycle. This entry represents the C-terminal, and is thought to be an is an unusual alpha+beta fold.; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0055114 oxidation-reduction process; PDB: 4MDH_B 5MDH_A 1GV0_A 1GUZ_D 2EWD_B 2FRM_D 2FNZ_B 2FN7_B 2FM3_A 1LTH_T .... |
| >PF00056 Ldh_1_N: lactate/malate dehydrogenase, NAD binding domain Prosite entry for lactate dehydrogenase Prosite entry for malate dehydrogenase; InterPro: IPR001236 L-lactate dehydrogenases are metabolic enzymes which catalyse the conversion of L-lactate to pyruvate, the last step in anaerobic glycolysis [] | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.7e-28 Score=199.99 Aligned_cols=141 Identities=31% Similarity=0.529 Sum_probs=126.7
Q ss_pred cEEEEEcCCChhHHHHHHHHHhcccCCCCCCeEEEEEecccchhhhhhhHhhhhhhccCCccceEEeCCHHHHhCCCcEE
Q 019990 6 LRVLVTGAAGQIGYALVPMIARGIMLGPDQPVILHMLDIEPAAEALNGVKMELIDAAFPLLKGVVATTDVVEACKDVNIA 85 (332)
Q Consensus 6 ~kI~VtGaaG~IGs~l~~~L~~~~~~~~~~~~~i~l~D~~~~~~~~~~~~~dl~~~~~~~~~~v~~~~~~~~a~~~aDiV 85 (332)
|||+|+||+|.||+++++.|+.+++.+ |++|+|+++ ++++|.++|++|...+...+.....+.++++++||+|
T Consensus 1 ~KV~IiGa~G~VG~~~a~~l~~~~l~~-----ei~L~D~~~--~~~~g~a~Dl~~~~~~~~~~~~i~~~~~~~~~~aDiv 73 (141)
T PF00056_consen 1 MKVAIIGAAGNVGSTLALLLAQQGLAD-----EIVLIDINE--DKAEGEALDLSHASAPLPSPVRITSGDYEALKDADIV 73 (141)
T ss_dssp SEEEEESTTSHHHHHHHHHHHHTTTSS-----EEEEEESSH--HHHHHHHHHHHHHHHGSTEEEEEEESSGGGGTTESEE
T ss_pred CEEEEECCCChHHHHHHHHHHhCCCCC-----ceEEeccCc--ccceeeehhhhhhhhhcccccccccccccccccccEE
Confidence 589999988999999999999988765 999999964 4789999999998766555555555778999999999
Q ss_pred EEecCCCCCCCCChhHHHhhhHHHHHHHHHHHHhhcCCCcEEEEEeCChhhHHHHHHHHCCCCCCCcEEE
Q 019990 86 VMVGGFPRKEGMERKDVMSKNVSIYKAQASALEKHAAPNCKVLVVANPANTNALILKEFAPSIPAKNITC 155 (332)
Q Consensus 86 i~~ag~~~~~~~~~~~~~~~N~~~~~~i~~~i~~~~~~~~~viv~snp~~~~~~~~~~~~~~~~~~~i~~ 155 (332)
|++||.+++++++|.+++..|+++++++++.+++++ |+++++++|||+|.++++++++ +++||+|++|
T Consensus 74 vitag~~~~~g~sR~~ll~~N~~i~~~~~~~i~~~~-p~~~vivvtNPvd~~t~~~~~~-s~~~~~kviG 141 (141)
T PF00056_consen 74 VITAGVPRKPGMSRLDLLEANAKIVKEIAKKIAKYA-PDAIVIVVTNPVDVMTYVAQKY-SGFPPNKVIG 141 (141)
T ss_dssp EETTSTSSSTTSSHHHHHHHHHHHHHHHHHHHHHHS-TTSEEEE-SSSHHHHHHHHHHH-HTSSGGGEEE
T ss_pred EEeccccccccccHHHHHHHhHhHHHHHHHHHHHhC-CccEEEEeCCcHHHHHHHHHHh-hCcCcccCcC
Confidence 999999999999999999999999999999999998 9999999999999999999998 8999999765
|
L-lactate dehydrogenase is also found as a lens crystallin in bird and crocodile eyes. L-2-hydroxyisocaproate dehydrogenases are also members of the family. Malate dehydrogenases catalyse the interconversion of malate to oxaloacetate []. The enzyme participates in the citric acid cycle. This entry represents the N-terminal, and is thought to be a Rossmann NAD-binding fold.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1IB6_B 3HHP_C 1IE3_A 2PWZ_A 1EMD_A 2CMD_A 1EZ4_D 9LDT_B 9LDB_B 2D4A_C .... |
| >cd05298 GH4_GlvA_pagL_like Glycoside Hydrolases Family 4; GlvA- and pagL-like glycosidases | Back alignment and domain information |
|---|
Probab=99.88 E-value=1.6e-19 Score=172.23 Aligned_cols=300 Identities=16% Similarity=0.171 Sum_probs=184.7
Q ss_pred cEEEEEcCCChhHHHHHHHHHhc-ccCCCCCCeEEEEEecccchhhhhhhHhhhhhhcc---CCccceEEeCCHHHHhCC
Q 019990 6 LRVLVTGAAGQIGYALVPMIARG-IMLGPDQPVILHMLDIEPAAEALNGVKMELIDAAF---PLLKGVVATTDVVEACKD 81 (332)
Q Consensus 6 ~kI~VtGaaG~IGs~l~~~L~~~-~~~~~~~~~~i~l~D~~~~~~~~~~~~~dl~~~~~---~~~~~v~~~~~~~~a~~~ 81 (332)
|||+|+||.++=+..++..|+.. ..++ ..+|+|+|+++ ++++. +..+..... ...-.+..++|..+|++|
T Consensus 1 ~KI~iIGaGS~~tp~li~~l~~~~~~l~---~~ei~L~DId~--~rl~~-v~~l~~~~~~~~g~~~~v~~Ttdr~eAl~g 74 (437)
T cd05298 1 FKIVIAGGGSTYTPGIVKSLLDRKEDFP---LRELVLYDIDA--ERQEK-VAEAVKILFKENYPEIKFVYTTDPEEAFTD 74 (437)
T ss_pred CeEEEECCcHHHHHHHHHHHHhCcccCC---CCEEEEECCCH--HHHHH-HHHHHHHHHHhhCCCeEEEEECCHHHHhCC
Confidence 58999997333333444555443 1121 24999999975 34432 222221110 112357778899999999
Q ss_pred CcEEEEecCC------------CCCCCC---Ch---hH--HHhhhHHHHHHHHHHHHhhcCCCcEEEEEeCChhhHHHHH
Q 019990 82 VNIAVMVGGF------------PRKEGM---ER---KD--VMSKNVSIYKAQASALEKHAAPNCKVLVVANPANTNALIL 141 (332)
Q Consensus 82 aDiVi~~ag~------------~~~~~~---~~---~~--~~~~N~~~~~~i~~~i~~~~~~~~~viv~snp~~~~~~~~ 141 (332)
||+||.+.-+ |.+.|. +. .. ..-+|++.+.++++.++++| |++++|++|||++.+++.+
T Consensus 75 ADfVi~~irvGg~~~r~~De~Ip~kyGi~gqET~G~GG~~~alRtip~~~~i~~~i~~~~-pda~lin~tNP~~~vt~~~ 153 (437)
T cd05298 75 ADFVFAQIRVGGYAMREQDEKIPLKHGVVGQETCGPGGFAYGLRSIGPMIELIDDIEKYS-PDAWILNYSNPAAIVAEAL 153 (437)
T ss_pred CCEEEEEeeeCCchHHHHHHhHHHHcCcceecCccHHHHHHHHhhHHHHHHHHHHHHHHC-CCeEEEEecCcHHHHHHHH
Confidence 9999998522 112221 10 11 23578999999999999998 9999999999999999999
Q ss_pred HHHCCCCCCCcEEEeecccHHHHHHHHHHHcCCCCCCeeeeEEEecCCCceeecccCcccccCCC-Ccchhhhcc----c
Q 019990 142 KEFAPSIPAKNITCLTRLDHNRAMGQISERLKVHVSDVKNVIIWGNHSSTQYPDVNHATVTTSKG-EKPVREAVA----D 216 (332)
Q Consensus 142 ~~~~~~~~~~~i~~~t~l~~~r~~~~~a~~~~v~~~~v~~~~V~G~hg~~~v~~~s~~~v~~~~~-~~p~~~~~~----~ 216 (332)
++. +|..+++|.|.-. ..+...+|+.+|+++.++..- +.| -+++.++.+.+. . |+++...+. +
T Consensus 154 ~~~---~~~~kviGlC~~~-~~~~~~la~~lg~~~~~v~~~-~~G---lNH~~w~~~~~~----~~G~D~~p~l~e~~~~ 221 (437)
T cd05298 154 RRL---FPNARILNICDMP-IAIMDSMAAILGLDRKDLEPD-YFG---LNHFGWFTKIYD----KQGEDLLPKLREHVKE 221 (437)
T ss_pred HHH---CCCCCEEEECCcH-HHHHHHHHHHhCCCHHHceEE-EEe---ecchhhhhheEE----CCCCchHHHHHHHHhc
Confidence 885 6777899999874 456778999999999999865 467 233445555554 3 333221110 0
Q ss_pred --------------cccc---------------------------hhHHHHH-----------HHhhHHHH---HH---h
Q 019990 217 --------------DNWL---------------------------NTEFITT-----------VQQRGAAI---IK---A 238 (332)
Q Consensus 217 --------------~~~~---------------------------~~~~~~~-----------v~~~~~~i---~~---~ 238 (332)
..|. .++..+. +.+...+. .+ .
T Consensus 222 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~p~~y~~yy~~~~~~~~~~~~~~~~~~e~~~~~~~~l~~~~~~~~~ 301 (437)
T cd05298 222 NGYLPPDSDEEHRDPSWNDTFANAKDMMADFPDYLPNTYLQYYLYPDYMVEHSNPNYTRANEVMDGREKRVFEECRKIIE 301 (437)
T ss_pred cCCCcccccccccccCchHHHHHHhhHHHhCCCcCCCchhhHhCChHHHHHHhccccccHHHHHHHHHHHHHHHHhhhhh
Confidence 0010 0000000 00011111 11 0
Q ss_pred cCC---cchHH--HHHHHHHHHHHHHcCCCCCcEEEEEEeecCCCC-CCCCeEEEEeEEEe-CCeEEEecCCCCCHHHHH
Q 019990 239 RKL---SSALS--AASSACDHIRDWVLGTPKGTWVSMGVYSDGSYG-IPEGLIYSFPVTCE-KGEWSIVKGLKVDEFSRA 311 (332)
Q Consensus 239 ~g~---~~~~~--~a~a~~~~i~~~~~~~~~~~i~~~~v~~~g~yg-~~~~~~~s~Pv~~~-~G~~~~~~~~~l~~~E~~ 311 (332)
.+. ....+ -|.++++++.+ |.+ |++.++++++..+|.|+ +|.++++++||+++ +|+..+.- -+|.+....
T Consensus 302 ~~~~~~~~~~~~~ya~~a~~ii~a-I~~-d~~~~~~vnv~n~G~i~nL~~d~~vevP~~v~~~Gi~pi~v-g~lP~~~~~ 378 (437)
T cd05298 302 TGTAEGSTFHVDVHGEYIVDLAAS-IAY-NTKERFLVIVENNGAIPNLPDDAMVEVPAYIGSNGPEPLVV-GKIPTFYKG 378 (437)
T ss_pred cCChhhhhhhccchHHHHHHHHHH-HHc-CCCeEEEEEeecCCccCCCCCCcEEEEEEEEeCCCceeccc-CCCCHHHHH
Confidence 010 01111 23455555555 554 56899999999999996 67899999999999 99888753 478888777
Q ss_pred HHHHHHHHHHHHHHHH
Q 019990 312 KMDATAEELAEEKTLA 327 (332)
Q Consensus 312 ~l~~s~~~i~~~~~~~ 327 (332)
+++.-...-+-.++++
T Consensus 379 l~~~~~~~e~l~veAa 394 (437)
T cd05298 379 LMEQQVAYEKLLVEAY 394 (437)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 6655444444444444
|
Bacillus subtilis GlvA and Clostridium acetobutylicum pagL are 6-phospho-alpha-glucosidase, catalyzing the hydrolysis of alpha-glucopyranoside bonds to release glucose from oligosaccharides. The substrate specificities of other members of this subgroup are unknown. Some bacteria simultaneously translocate and phosphorylate disaccharides via the phosphoenolpyruvate-dependent phosphotransferase system (PEP_PTS). After translocation, these phospho-disaccharides may be hydrolyzed by the GH4 glycoside hydrolases, which include 6-phospho-beta-glucosidases, 6-phospho-alpha-glucosidases, alpha-glucosidases/alpha-glucuronidases (only from Thermotoga), and alpha-galactosidases. Members of this subfamily are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductas |
| >cd05197 GH4_glycoside_hydrolases Glycoside Hydrases Family 4 | Back alignment and domain information |
|---|
Probab=99.87 E-value=1.3e-19 Score=172.59 Aligned_cols=186 Identities=18% Similarity=0.171 Sum_probs=133.3
Q ss_pred cEEEEEcCCChhHHHHHHHHHhcc-cCCCCCCeEEEEEecccchhhhhhhHhhhhhhcc-CC--ccceEEeCCHHHHhCC
Q 019990 6 LRVLVTGAAGQIGYALVPMIARGI-MLGPDQPVILHMLDIEPAAEALNGVKMELIDAAF-PL--LKGVVATTDVVEACKD 81 (332)
Q Consensus 6 ~kI~VtGaaG~IGs~l~~~L~~~~-~~~~~~~~~i~l~D~~~~~~~~~~~~~dl~~~~~-~~--~~~v~~~~~~~~a~~~ 81 (332)
+||+|+||.++=.-.++..|+... -+. ..+|.|+|+++ ++++- +..+..... .. ...+..++|..+|++|
T Consensus 1 ~KI~iIGgGS~~tp~li~~l~~~~~~l~---~~ei~L~Did~--~Rl~~-v~~l~~~~~~~~g~~~~v~~ttD~~~Al~g 74 (425)
T cd05197 1 VKIAIIGGGSSFTPELVSGLLKTPEELP---ISEVTLYDIDE--ERLDI-ILTIAKRYVEEVGADIKFEKTMDLEDAIID 74 (425)
T ss_pred CEEEEECCchHhHHHHHHHHHcChhhCC---CCEEEEEcCCH--HHHHH-HHHHHHHHHHhhCCCeEEEEeCCHHHHhCC
Confidence 589999973332333444554332 111 24999999975 33332 222211100 11 2357778999999999
Q ss_pred CcEEEEecCC------------CCCCCCCh--------hHHHhhhHHHHHHHHHHHHhhcCCCcEEEEEeCChhhHHHHH
Q 019990 82 VNIAVMVGGF------------PRKEGMER--------KDVMSKNVSIYKAQASALEKHAAPNCKVLVVANPANTNALIL 141 (332)
Q Consensus 82 aDiVi~~ag~------------~~~~~~~~--------~~~~~~N~~~~~~i~~~i~~~~~~~~~viv~snp~~~~~~~~ 141 (332)
||+||.+.-+ |.+.|.-. .-..-+|+++++++++.++++| |++++|++|||++.+++.+
T Consensus 75 ADfVi~~irvGg~~~r~~De~Iplk~G~~gqeT~G~GG~~~alrni~ii~~i~~~i~~~~-P~a~lin~TNP~di~t~a~ 153 (425)
T cd05197 75 ADFVINQFRVGGLTYREKDEQIPLKYGVIGQETVGPGGTFSGLRQIPYVLDIARKXEKLS-PDAWYLNFTNPAGEVTEAV 153 (425)
T ss_pred CCEEEEeeecCChHHHHHHHhHHHHcCcccccccCcchhhhhhhhHHHHHHHHHHHHHhC-CCcEEEecCChHHHHHHHH
Confidence 9999998522 11221100 1123468999999999999998 9999999999999999999
Q ss_pred HHHCCCCCCCcEEEeecccHHHHHHHHHHHcCCCCCCeeeeEEEe-cCCCceeecccCcccccCCCCcchh
Q 019990 142 KEFAPSIPAKNITCLTRLDHNRAMGQISERLKVHVSDVKNVIIWG-NHSSTQYPDVNHATVTTSKGEKPVR 211 (332)
Q Consensus 142 ~~~~~~~~~~~i~~~t~l~~~r~~~~~a~~~~v~~~~v~~~~V~G-~hg~~~v~~~s~~~v~~~~~~~p~~ 211 (332)
++. .|+.+++|.|.. +.|+++.+|+.+|+++++|+.+ ++| +|| ++||++++ +|+|+.
T Consensus 154 ~~~---~p~~rviG~c~~-~~r~~~~ia~~lgv~~~~v~~~-v~GlnHg----~~~s~~~~----~G~~l~ 211 (425)
T cd05197 154 RRY---VPPEKAVGLCNV-PIGVMEIVAKLLGESEEKVDWQ-YAGLNHG----IWLNRVRY----NGGDVT 211 (425)
T ss_pred HHh---CCCCcEEEECCC-HHHHHHHHHHHhCCCHHHeEEE-EEeccCe----EeeEeEEE----CCeecH
Confidence 986 366788888877 9999999999999999999987 589 998 89999998 776665
|
Glycoside hydrolases cleave glycosidic bonds to release smaller sugars from oligo- or polysaccharides. Some bacteria simultaneously translocate and phosphorylate disaccharides via the phosphoenolpyruvate-dependent phosphotransferase system (PEP-PTS). After translocation, these phospho-disaccharides may be hydrolyzed by GH4 glycoside hydrolases. Other organisms (such as archaea and Thermotoga maritima) lack the PEP-PTS system, but have several enzymes normally associated with the PEP-PTS operon. GH4 family members include 6-phospho-beta-glucosidases, 6-phospho-alpha-glucosidases, alpha-glucosidases/alpha-glucuronidases (only from Thermotoga), and alpha-galactosidases. They require two cofactors, NAD+ and a divalent metal (Mn2+, Ni2+, Mg2+), for activity. Some also require reducing conditions. GH4 glycoside hydrolases are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families in |
| >PRK15076 alpha-galactosidase; Provisional | Back alignment and domain information |
|---|
Probab=99.86 E-value=5.8e-19 Score=168.69 Aligned_cols=295 Identities=15% Similarity=0.127 Sum_probs=185.3
Q ss_pred CcEEEEEcCCChhHHHHHH--HHH-hcccCCCCCCeEEEEEecccchhhhh-hhHhhhhhhccC--CccceEEeCCHHHH
Q 019990 5 PLRVLVTGAAGQIGYALVP--MIA-RGIMLGPDQPVILHMLDIEPAAEALN-GVKMELIDAAFP--LLKGVVATTDVVEA 78 (332)
Q Consensus 5 ~~kI~VtGaaG~IGs~l~~--~L~-~~~~~~~~~~~~i~l~D~~~~~~~~~-~~~~dl~~~~~~--~~~~v~~~~~~~~a 78 (332)
|+||+|+| +|.+|++.+. .++ ..++.+ .+|+|+|+++ +++. +... +.+.... ....++.++|.+++
T Consensus 1 ~~KIaIIG-aGsvg~~~~~~~~i~~~~~l~~----~evvLvDid~--er~~~~~~l-~~~~~~~~~~~~~i~~ttD~~ea 72 (431)
T PRK15076 1 MPKITFIG-AGSTVFTKNLLGDILSVPALRD----AEIALMDIDP--ERLEESEIV-ARKLAESLGASAKITATTDRREA 72 (431)
T ss_pred CcEEEEEC-CCHHHhHHHHHHHHhhCccCCC----CEEEEECCCH--HHHHHHHHH-HHHHHHhcCCCeEEEEECCHHHH
Confidence 46999999 5999988776 555 233322 3899999965 3444 2222 3332211 12456767888899
Q ss_pred hCCCcEEEEecCCC-CCCC--------------CChhHH--------HhhhHHHHHHHHHHHHhhcCCCcEEEEEeCChh
Q 019990 79 CKDVNIAVMVGGFP-RKEG--------------MERKDV--------MSKNVSIYKAQASALEKHAAPNCKVLVVANPAN 135 (332)
Q Consensus 79 ~~~aDiVi~~ag~~-~~~~--------------~~~~~~--------~~~N~~~~~~i~~~i~~~~~~~~~viv~snp~~ 135 (332)
+++||+||.+++++ ++++ ++|.+. ..+|++.++++++.++++| |++++|++|||++
T Consensus 73 l~dADfVv~ti~vg~~~~~~~~De~Iplk~G~~~~r~et~G~GG~~~~~r~i~~i~~i~~~i~~~~-p~a~iin~tNP~d 151 (431)
T PRK15076 73 LQGADYVINAIQVGGYEPCTVTDFEIPKKYGLRQTIGDTLGIGGIMRALRTIPVLLDICEDMEEVC-PDALLLNYVNPMA 151 (431)
T ss_pred hCCCCEEeEeeeeCCcchhhhhhhhhHHHcCCeeecccCcCccchhhhhhhHHHHHHHHHHHHHHC-CCeEEEEcCChHH
Confidence 99999999999875 3333 233344 6789999999999999998 9999999999999
Q ss_pred hHHHHHHHHCCCCCCCcEEEee--cccHHHHHHHHHHHcCCCCCCeeeeEEEe-cCCCceeecccCcccccCCCCcchhh
Q 019990 136 TNALILKEFAPSIPAKNITCLT--RLDHNRAMGQISERLKVHVSDVKNVIIWG-NHSSTQYPDVNHATVTTSKGEKPVRE 212 (332)
Q Consensus 136 ~~~~~~~~~~~~~~~~~i~~~t--~l~~~r~~~~~a~~~~v~~~~v~~~~V~G-~hg~~~v~~~s~~~v~~~~~~~p~~~ 212 (332)
.+++.+++ +|+.|++|.| .+++. +.+|+.+|+++++|+.. ++| +| +.|+.+.+. .|+++..
T Consensus 152 ivt~~~~~----~~~~rviG~c~~~~~~~---~~ia~~l~v~~~~v~~~-~~GlNH----~~W~~~~~~----~G~D~~p 215 (431)
T PRK15076 152 MNTWAMNR----YPGIKTVGLCHSVQGTA---EQLARDLGVPPEELRYR-CAGINH----MAWYLELER----KGEDLYP 215 (431)
T ss_pred HHHHHHhc----CCCCCEEEECCCHHHHH---HHHHHHhCCCHHHeEEE-EEeecc----hhhheeeeE----CCcchHH
Confidence 99998863 5667877776 44443 77999999999999976 478 44 445555554 2222211
Q ss_pred hc--------------------------cc-------c--ccc----hhHHHHHH--------------HhhHHHHH-Hh
Q 019990 213 AV--------------------------AD-------D--NWL----NTEFITTV--------------QQRGAAII-KA 238 (332)
Q Consensus 213 ~~--------------------------~~-------~--~~~----~~~~~~~v--------------~~~~~~i~-~~ 238 (332)
.+ .. + .|- .++..+.. .....+.+ +.
T Consensus 216 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~y~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 295 (431)
T PRK15076 216 ELRAAAAEGQTRCQDKVRYEMLKRFGYFVTESSEHFAEYVPWFIKPGRPDLIERFNIPLDEYPRRCEEQIANWEKEREEL 295 (431)
T ss_pred HHHHHHhccCchhcccccHHHHHHhCCCcccchhhhhhhhcccCcCCCHHHHHHhhcccchhhhhHHHHhhhHHHHHHHh
Confidence 00 00 0 111 11111111 01111111 11
Q ss_pred cCCcchHH--HHHHHHHHHHHHHcCCCCCcEEEEEEeecCCC-CCCCCeEEEEeEEEe-CCeEEEecCCCCCHHHHHHHH
Q 019990 239 RKLSSALS--AASSACDHIRDWVLGTPKGTWVSMGVYSDGSY-GIPEGLIYSFPVTCE-KGEWSIVKGLKVDEFSRAKMD 314 (332)
Q Consensus 239 ~g~~~~~~--~a~a~~~~i~~~~~~~~~~~i~~~~v~~~g~y-g~~~~~~~s~Pv~~~-~G~~~~~~~~~l~~~E~~~l~ 314 (332)
.+..++.. .+-.++.++.+ |.+ |++.++.+.|.-+|.- ++|.+.++=+||.++ +|+.-+.- -+|.+..+.+++
T Consensus 296 ~~~~~~~~~~~~e~a~~ii~a-i~~-~~~~~~~vnv~N~G~I~~Lp~d~vVEvp~~v~~~G~~P~~~-g~lP~~~~~l~~ 372 (431)
T PRK15076 296 ANAERIEIKRSREYASTIIEA-IET-GEPSVIYGNVRNNGLIDNLPQGCCVEVPCLVDRNGIQPTKV-GDLPPQLAALNR 372 (431)
T ss_pred hCCCccccccchHHHHHHHHH-Hhc-CCceEEEEECCCCCcCCCCCCCCEEEEeEEEcCCcceeeec-CCCCHHHHHHHH
Confidence 22211110 12233444444 554 4578888888777753 678999999999999 88877653 478888777665
Q ss_pred HHHHHHHHHHHHH
Q 019990 315 ATAEELAEEKTLA 327 (332)
Q Consensus 315 ~s~~~i~~~~~~~ 327 (332)
.-...-+-.++++
T Consensus 373 ~~~~~e~l~veAa 385 (431)
T PRK15076 373 TNINVQELTVEAA 385 (431)
T ss_pred HHHHHHHHHHHHH
Confidence 5444433344444
|
|
| >cd05296 GH4_P_beta_glucosidase Glycoside Hydrolases Family 4; Phospho-beta-glucosidase | Back alignment and domain information |
|---|
Probab=99.84 E-value=5.6e-18 Score=161.10 Aligned_cols=297 Identities=17% Similarity=0.146 Sum_probs=180.8
Q ss_pred cEEEEEcCCChhHHHHHHHHHhc-ccCCCCCCeEEEEEecccchhhhhhhHhhhhhhccCC--ccceEEeCCHHHHhCCC
Q 019990 6 LRVLVTGAAGQIGYALVPMIARG-IMLGPDQPVILHMLDIEPAAEALNGVKMELIDAAFPL--LKGVVATTDVVEACKDV 82 (332)
Q Consensus 6 ~kI~VtGaaG~IGs~l~~~L~~~-~~~~~~~~~~i~l~D~~~~~~~~~~~~~dl~~~~~~~--~~~v~~~~~~~~a~~~a 82 (332)
+||+|+||.++=...++..|+.. .-++ ..+|.|+|++. .+++.....-........ ...+..++|..+|++||
T Consensus 1 ~KI~iIGaGS~~tp~li~~l~~~~~~l~---~~ei~L~Did~-~~rl~~v~~~~~~~~~~~~~~~~v~~t~d~~~al~ga 76 (419)
T cd05296 1 MKLTIIGGGSSYTPELIEGLIRRYEELP---VTELVLVDIDE-EEKLEIVGALAKRMVKKAGLPIKVHLTTDRREALEGA 76 (419)
T ss_pred CEEEEECCchHhHHHHHHHHHhccccCC---CCEEEEecCCh-HHHHHHHHHHHHHHHHhhCCCeEEEEeCCHHHHhCCC
Confidence 58999997333222344555542 2111 24999999973 244432211111111111 23567788999999999
Q ss_pred cEEEEecCCCCCCCCChhH--------------------HHhhhHHHHHHHHHHHHhhcCCCcEEEEEeCChhhHHHHHH
Q 019990 83 NIAVMVGGFPRKEGMERKD--------------------VMSKNVSIYKAQASALEKHAAPNCKVLVVANPANTNALILK 142 (332)
Q Consensus 83 DiVi~~ag~~~~~~~~~~~--------------------~~~~N~~~~~~i~~~i~~~~~~~~~viv~snp~~~~~~~~~ 142 (332)
|+||.++++...++..+++ ...+|+++++++++.++++| |+++++++|||++.+++.++
T Consensus 77 dfVi~~~~vg~~~~r~~de~i~~~~Gi~gqET~G~GG~~~a~rni~ii~~i~~~i~~~~-Pda~lin~TNP~~ivt~a~~ 155 (419)
T cd05296 77 DFVFTQIRVGGLEARALDERIPLKHGVIGQETTGAGGFAKALRTIPVILDIAEDVEELA-PDAWLINFTNPAGIVTEAVL 155 (419)
T ss_pred CEEEEEEeeCCcchhhhhhhhHHHcCCccccCCCcchHHHhhhhHHHHHHHHHHHHHHC-CCeEEEEecCHHHHHHHHHH
Confidence 9999998765544333322 24678999999999999998 99999999999999999998
Q ss_pred HHCCCCCCCcEEEeecccHHHHHHHHHHHcCCCCCCeeeeEEEe-cCCCceeecccCcccccCCCCcchhhh-cc-----
Q 019990 143 EFAPSIPAKNITCLTRLDHNRAMGQISERLKVHVSDVKNVIIWG-NHSSTQYPDVNHATVTTSKGEKPVREA-VA----- 215 (332)
Q Consensus 143 ~~~~~~~~~~i~~~t~l~~~r~~~~~a~~~~v~~~~v~~~~V~G-~hg~~~v~~~s~~~v~~~~~~~p~~~~-~~----- 215 (332)
+. + +.|++|.|.. +.|+++.+|+.+|+++++++.+ |+| +| +.++.+.+. .|+++..- +.
T Consensus 156 k~-~---~~rviGlc~~-~~r~~~~ia~~lg~~~~~v~~~-v~GlNH----~~w~~~~~~----~G~D~~p~l~~~~~~~ 221 (419)
T cd05296 156 RH-T---GDRVIGLCNV-PIGLQRRIAELLGVDPEDVFID-YAGLNH----LGWLRRVLL----DGEDVLPELLEDLAAL 221 (419)
T ss_pred Hh-c---cCCEEeeCCc-HHHHHHHHHHHhCCCHHHceEE-EEeccc----ceeeeeeeE----CCcccHHHHHHHhhhc
Confidence 86 3 5678888877 5899999999999999999986 589 77 344444444 33322210 00
Q ss_pred -----cccc--------------------chhHHHHH-----------HHhhHHHH---HH------------hcCCcch
Q 019990 216 -----DDNW--------------------LNTEFITT-----------VQQRGAAI---IK------------ARKLSSA 244 (332)
Q Consensus 216 -----~~~~--------------------~~~~~~~~-----------v~~~~~~i---~~------------~~g~~~~ 244 (332)
+..| ..++..+. +.+...++ .+ .++++ +
T Consensus 222 ~~~~~~~~~~~~~~~~~g~~p~~Yl~yy~~~~~~~~~~~~~~~~r~e~~~~~~~~l~~~~~~~~~~~~~~~~~~r~g~-~ 300 (419)
T cd05296 222 LSFEEGLLFGPELLRALGALPNEYLRYYYQTDEALEEILEAAGTRGEVVKEVEKELFELYKDPNLDEKPKELEKRGGA-G 300 (419)
T ss_pred cccccccchHHHHHHhcCCcccchHHHHCCcHHHHHHhhhhccchHHHHHHHHHHHHHHHhccccccChHhhHhhcCc-c
Confidence 0000 00111110 00001111 11 11111 0
Q ss_pred HHHHHHHHHHHHHHHcCCCCCcEEEEEEeecCCC-CCCCCeEEEEeEEEe-CCeEEEecCCCCCHHHHHHHHHHHHHHHH
Q 019990 245 LSAASSACDHIRDWVLGTPKGTWVSMGVYSDGSY-GIPEGLIYSFPVTCE-KGEWSIVKGLKVDEFSRAKMDATAEELAE 322 (332)
Q Consensus 245 ~~~a~a~~~~i~~~~~~~~~~~i~~~~v~~~g~y-g~~~~~~~s~Pv~~~-~G~~~~~~~~~l~~~E~~~l~~s~~~i~~ 322 (332)
. +-..+.+|.+ |.+ +++.++-+.|.-+|.- ++|.+.++=+||.++ +|+.-+-- -+|.+....+++.-...-+-
T Consensus 301 y--~e~a~~ii~a-i~~-~~~~~~~vNv~N~G~I~~Lp~d~vVEvp~~v~~~G~~P~~v-g~lP~~~~~l~~~~~~~e~l 375 (419)
T cd05296 301 Y--SEAALALISA-IYN-DKGDIHVVNVRNNGAIPGLPDDAVVEVPCVVDADGAHPLPV-GPLPPAILGLIQQVKAYERL 375 (419)
T ss_pred h--HHHHHHHHHH-Hhc-CCCcEEEEECCCCCCCCCCCCCCEEEEeEEEcCCCceeccC-CCCCHHHHHHHHHHHHHHHH
Confidence 1 1223344544 554 4567777888777753 578999999999999 88766532 36888876665544333333
Q ss_pred HHHHH
Q 019990 323 EKTLA 327 (332)
Q Consensus 323 ~~~~~ 327 (332)
.++++
T Consensus 376 ~veAa 380 (419)
T cd05296 376 TIEAA 380 (419)
T ss_pred HHHHH
Confidence 44444
|
Some bacteria simultaneously translocate and phosphorylate disaccharides via the phosphoenolpyruvate-dependent phosphotransferase system (PEP-PTS). After translocation, these phospho-disaccharides may be hydrolyzed by the GH4 glycoside hydrolases such as the phospho-beta-glucosidases. Other organisms (such as archaea and Thermotoga maritima ) lack the PEP-PTS system, but have several enzymes normally associated with the PEP-PTS operon. The 6-phospho-beta-glucosidase from Thermotoga maritima hydrolylzes cellobiose 6-phosphate (6P) into glucose-6P and glucose, in an NAD+ and Mn2+ dependent fashion. The Escherichia coli 6-phospho-beta-glucosidase (also called celF) hydrolyzes a variety of phospho-beta-glucosides including cellobiose-6P, salicin-6P, arbutin-6P, and gentobiose-6P. Phospho-beta-glucosidases are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein |
| >cd05297 GH4_alpha_glucosidase_galactosidase Glycoside Hydrolases Family 4; Alpha-glucosidases and alpha-galactosidases | Back alignment and domain information |
|---|
Probab=99.78 E-value=2.9e-16 Score=150.37 Aligned_cols=169 Identities=19% Similarity=0.198 Sum_probs=126.0
Q ss_pred cEEEEEcCCChhHHHHHH--HHHhc-ccCCCCCCeEEEEEecccchhhhhhhHhhhhhhcc--CCccceEEeCCHHHHhC
Q 019990 6 LRVLVTGAAGQIGYALVP--MIARG-IMLGPDQPVILHMLDIEPAAEALNGVKMELIDAAF--PLLKGVVATTDVVEACK 80 (332)
Q Consensus 6 ~kI~VtGaaG~IGs~l~~--~L~~~-~~~~~~~~~~i~l~D~~~~~~~~~~~~~dl~~~~~--~~~~~v~~~~~~~~a~~ 80 (332)
+||+|+| +|.+|++++. .++.. ...+ .+|+|+|+++ +++.....++.+... ....++..++|+.++++
T Consensus 1 ~KIaIIG-aGs~G~a~a~~~~i~~~~~~~g----~eV~L~Did~--e~l~~~~~~~~~~~~~~~~~~~I~~ttD~~eal~ 73 (423)
T cd05297 1 IKIAFIG-AGSVVFTKNLVGDLLKTPELSG----STIALMDIDE--ERLETVEILAKKIVEELGAPLKIEATTDRREALD 73 (423)
T ss_pred CeEEEEC-CChHHhHHHHHHHHhcCCCCCC----CEEEEECCCH--HHHHHHHHHHHHHHHhcCCCeEEEEeCCHHHHhc
Confidence 4899999 6999998776 45432 3322 3899999964 455555555544321 12246777888899999
Q ss_pred CCcEEEEecCCCCCCCCCh----------------------hHHHhhhHHHHHHHHHHHHhhcCCCcEEEEEeCChhhHH
Q 019990 81 DVNIAVMVGGFPRKEGMER----------------------KDVMSKNVSIYKAQASALEKHAAPNCKVLVVANPANTNA 138 (332)
Q Consensus 81 ~aDiVi~~ag~~~~~~~~~----------------------~~~~~~N~~~~~~i~~~i~~~~~~~~~viv~snp~~~~~ 138 (332)
+||+||.+++.....+..+ ......|+..+.++++.+++++ |+++++++|||++.++
T Consensus 74 ~AD~Vi~ai~~~~~~~~~~de~i~~K~g~~~~~~~t~g~ggi~~~~~s~~~i~~ia~~i~~~~-p~a~~i~~tNPv~i~t 152 (423)
T cd05297 74 GADFVINTIQVGGHEYTETDFEIPEKYGYYQTVGDTSGPGGIFRALRTIPVLLDIARDIEELC-PDAWLLNYANPMAELT 152 (423)
T ss_pred CCCEEEEeeEecCccchhhhhhhHHHcCeeeeccCCCcHHHHHHHHhhHHHHHHHHHHHHHHC-CCCEEEEcCChHHHHH
Confidence 9999999987543332222 1234567889999999999998 7999999999999999
Q ss_pred HHHHHHCCCCCCCcEEEeecccHHHHHHHHHHHcCCCCCCeeeeEEEe-cC
Q 019990 139 LILKEFAPSIPAKNITCLTRLDHNRAMGQISERLKVHVSDVKNVIIWG-NH 188 (332)
Q Consensus 139 ~~~~~~~~~~~~~~i~~~t~l~~~r~~~~~a~~~~v~~~~v~~~~V~G-~h 188 (332)
+.+++. ++ .+++|.|.. +.++++.+|+.+|+++++|+.. ++| +|
T Consensus 153 ~~~~k~-~~---~rviG~c~~-~~~~~~~~a~~l~~~~~~v~~~-~~GlNH 197 (423)
T cd05297 153 WALNRY-TP---IKTVGLCHG-VQGTAEQLAKLLGEPPEEVDYQ-VAGINH 197 (423)
T ss_pred HHHHHh-CC---CCEEEECCc-HHHHHHHHHHHhCCCHHHeEEE-EEeecc
Confidence 999886 33 567677755 8899999999999999999987 478 44
|
linked to 3D####ucture |
| >COG1486 CelF Alpha-galactosidases/6-phospho-beta-glucosidases, family 4 of glycosyl hydrolases [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.68 E-value=2.5e-14 Score=133.99 Aligned_cols=298 Identities=18% Similarity=0.216 Sum_probs=178.7
Q ss_pred CCcEEEEEcCCChhHHHHH-H-HHHhcccCCCCCCeEEEEEecccchhhhhhhHhhhhhhcc-CC--ccceEEeCCHHHH
Q 019990 4 NPLRVLVTGAAGQIGYALV-P-MIARGIMLGPDQPVILHMLDIEPAAEALNGVKMELIDAAF-PL--LKGVVATTDVVEA 78 (332)
Q Consensus 4 ~~~kI~VtGaaG~IGs~l~-~-~L~~~~~~~~~~~~~i~l~D~~~~~~~~~~~~~dl~~~~~-~~--~~~v~~~~~~~~a 78 (332)
++.||+|+|| |+++.... . .|.+..-++ ..++.|+|++. ++++ ....+.+-.. .. ...+..++|.++|
T Consensus 2 ~~~KI~iIGg-GSt~tp~~v~g~l~~~e~l~---~~el~L~Did~--~r~~-~i~~~~~~~v~~~g~~~kv~~ttd~~eA 74 (442)
T COG1486 2 KKFKIVIIGG-GSTYTPKLLLGDLARTEELP---VRELALYDIDE--ERLK-IIAILAKKLVEEAGAPVKVEATTDRREA 74 (442)
T ss_pred CcceEEEECC-CccccHHHHHHHHhcCccCC---cceEEEEeCCH--HHHH-HHHHHHHHHHHhhCCCeEEEEecCHHHH
Confidence 4678999995 66554432 1 222222222 23999999975 3333 2222221100 01 1356678899999
Q ss_pred hCCCcEEEEecCC------------CCCCCCChh------HHH--hhhHHHHHHHHHHHHhhcCCCcEEEEEeCChhhHH
Q 019990 79 CKDVNIAVMVGGF------------PRKEGMERK------DVM--SKNVSIYKAQASALEKHAAPNCKVLVVANPANTNA 138 (332)
Q Consensus 79 ~~~aDiVi~~ag~------------~~~~~~~~~------~~~--~~N~~~~~~i~~~i~~~~~~~~~viv~snp~~~~~ 138 (332)
++|||+|+.+.-+ |.+.|.-+. .++ -++++.+.++++.++++| |+++++++|||+...|
T Consensus 75 l~gAdfVi~~~rvG~l~~r~~De~IplkyG~~gqET~G~GGi~~glRtIpvildi~~~m~~~~-P~Aw~lNytNP~~~vT 153 (442)
T COG1486 75 LEGADFVITQIRVGGLEAREKDERIPLKHGLYGQETNGPGGIFYGLRTIPVILDIAKDMEKVC-PNAWMLNYTNPAAIVT 153 (442)
T ss_pred hcCCCEEEEEEeeCCcccchhhhccchhhCccccccccccHHHhhcccchHHHHHHHHHHHhC-CCceEEeccChHHHHH
Confidence 9999999997521 222221111 122 367899999999999998 9999999999999999
Q ss_pred HHHHHHCCCCCCCcEEEeecccHHHHHHHHHHHcCCCC-CCeeeeEEEe-cCCCceeecccCcccccCCCCcchhhh---
Q 019990 139 LILKEFAPSIPAKNITCLTRLDHNRAMGQISERLKVHV-SDVKNVIIWG-NHSSTQYPDVNHATVTTSKGEKPVREA--- 213 (332)
Q Consensus 139 ~~~~~~~~~~~~~~i~~~t~l~~~r~~~~~a~~~~v~~-~~v~~~~V~G-~hg~~~v~~~s~~~v~~~~~~~p~~~~--- 213 (332)
..+.++ +|.-+++|.|+. ..-....+|+.+++++ .+++. -++| +| +.+|.+++. +|+++..-
T Consensus 154 eAv~r~---~~~~K~VGlCh~-~~g~~~~lAe~L~~~~~~~l~~-~~aGlNH----~~w~~~~~~----~G~d~~p~l~~ 220 (442)
T COG1486 154 EAVRRL---YPKIKIVGLCHG-PIGIAMELAEVLGLEPREDLRY-RVAGLNH----MVWILRVRD----DGEDLYPELLE 220 (442)
T ss_pred HHHHHh---CCCCcEEeeCCc-hHHHHHHHHHHhCCCchhceeE-EEeechh----hhhhhHhhh----cCccchHHHHH
Confidence 988886 453378899986 3455778999999975 99996 4688 44 334444443 11111100
Q ss_pred -----------------------------------------------ccccc-----c-c-hhHHHHHHHhhHHHHHH--
Q 019990 214 -----------------------------------------------VADDN-----W-L-NTEFITTVQQRGAAIIK-- 237 (332)
Q Consensus 214 -----------------------------------------------~~~~~-----~-~-~~~~~~~v~~~~~~i~~-- 237 (332)
...+. | . .+++.++ .+.-++..+
T Consensus 221 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~ra~ev~~r-e~~~~~~~~~~ 299 (442)
T COG1486 221 ALEEGGSPSEPENKNIQSPVWIDMFLKYGYPVLPSSYHRYYYYPYDMKEKKPDEIEKFGTRANEVMKR-EKELFELYKKP 299 (442)
T ss_pred HHhccccCCccccccccCcchHHHHHHhCcCcccCcchhhheehHhhhhccchhhhhcCCCHHHHHHH-HHHHHHHHhhh
Confidence 00000 1 0 0111110 000011111
Q ss_pred ----------hcCCcchHHHHHHHHHHHHHHHcCCCCCcEEEEEEeecCC-CCCCCCeEEEEeEEEe-CCeEEEecCCCC
Q 019990 238 ----------ARKLSSALSAASSACDHIRDWVLGTPKGTWVSMGVYSDGS-YGIPEGLIYSFPVTCE-KGEWSIVKGLKV 305 (332)
Q Consensus 238 ----------~~g~~~~~~~a~a~~~~i~~~~~~~~~~~i~~~~v~~~g~-yg~~~~~~~s~Pv~~~-~G~~~~~~~~~l 305 (332)
.++.+--.+ +-..+.++.+ |.+ +++.++.+.|.-+|. -++|.+..+=+||+++ +|+.-... .+|
T Consensus 300 ~~~~~p~~~~~~~~~~~~~-~e~a~~ii~A-i~~-~~~~~~~vNv~N~G~I~nlp~D~vVEvpc~Vd~~Gi~P~~~-g~l 375 (442)
T COG1486 300 ELKEKPEELEKRIGAGKYS-SEYASNIINA-IEN-NKPSRIYVNVRNNGAITNLPDDAVVEVPCLVDRNGIHPLAV-GDL 375 (442)
T ss_pred hhhcCchhhhhcCCccccc-HHHHHHHHHH-Hhc-CCceEEEEEcCCCccccCCCCCeEEEeeEEecCCCCccccc-CCC
Confidence 111110012 2333344544 554 467888888888886 4678999999999999 99888764 799
Q ss_pred CHHHHHHHHHHHHHHHHHHHHH
Q 019990 306 DEFSRAKMDATAEELAEEKTLA 327 (332)
Q Consensus 306 ~~~E~~~l~~s~~~i~~~~~~~ 327 (332)
.+.-+..++.....-+-.++++
T Consensus 376 P~~~~~l~~~~i~~e~l~veA~ 397 (442)
T COG1486 376 PEFVKGLMHTNINVEELTVEAA 397 (442)
T ss_pred CHHHHHHHHHHHHHHHHHHHHH
Confidence 9998887776655555455544
|
|
| >COG1087 GalE UDP-glucose 4-epimerase [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Probab=99.61 E-value=2.2e-15 Score=133.33 Aligned_cols=166 Identities=17% Similarity=0.137 Sum_probs=120.2
Q ss_pred cEEEEEcCCChhHHHHHHHHHhcccCCCCCCeEEEEEecccchhhhhhhHhhhhhhc-cCCccceEEeCCHHHHhC--CC
Q 019990 6 LRVLVTGAAGQIGYALVPMIARGIMLGPDQPVILHMLDIEPAAEALNGVKMELIDAA-FPLLKGVVATTDVVEACK--DV 82 (332)
Q Consensus 6 ~kI~VtGaaG~IGs~l~~~L~~~~~~~~~~~~~i~l~D~~~~~~~~~~~~~dl~~~~-~~~~~~v~~~~~~~~a~~--~a 82 (332)
|+|+||||+|+||||.+..|++.|+ +++++|+.. .+...-+.... ..+.+|+.+..-+.+.++ ..
T Consensus 1 ~~iLVtGGAGYIGSHtv~~Ll~~G~-------~vvV~DNL~-----~g~~~~v~~~~~~f~~gDi~D~~~L~~vf~~~~i 68 (329)
T COG1087 1 MKVLVTGGAGYIGSHTVRQLLKTGH-------EVVVLDNLS-----NGHKIALLKLQFKFYEGDLLDRALLTAVFEENKI 68 (329)
T ss_pred CeEEEecCcchhHHHHHHHHHHCCC-------eEEEEecCC-----CCCHHHhhhccCceEEeccccHHHHHHHHHhcCC
Confidence 5799999999999999999999886 899999743 23322222211 123466766655666554 68
Q ss_pred cEEEEecCCCCCCC--CChhHHHhhhHHHHHHHHHHHHhhcCCCcEEEEEeCChhh----H-HHHHHHHCCCCCCCcEEE
Q 019990 83 NIAVMVGGFPRKEG--MERKDVMSKNVSIYKAQASALEKHAAPNCKVLVVANPANT----N-ALILKEFAPSIPAKNITC 155 (332)
Q Consensus 83 DiVi~~ag~~~~~~--~~~~~~~~~N~~~~~~i~~~i~~~~~~~~~viv~snp~~~----~-~~~~~~~~~~~~~~~i~~ 155 (332)
|.|||.||...-.+ .....++..|+..+..++++|++++ .+ ++|+.| .+.+ . .++ .|. ....|.++||
T Consensus 69 daViHFAa~~~VgESv~~Pl~Yy~NNv~gTl~Ll~am~~~g-v~-~~vFSS-tAavYG~p~~~PI-~E~-~~~~p~NPYG 143 (329)
T COG1087 69 DAVVHFAASISVGESVQNPLKYYDNNVVGTLNLIEAMLQTG-VK-KFIFSS-TAAVYGEPTTSPI-SET-SPLAPINPYG 143 (329)
T ss_pred CEEEECccccccchhhhCHHHHHhhchHhHHHHHHHHHHhC-CC-EEEEec-chhhcCCCCCccc-CCC-CCCCCCCcch
Confidence 99999998643221 2346789999999999999999997 33 444444 3211 1 122 221 3455777999
Q ss_pred eecccHHHHHHHHHHHcCCCCCCeeeeEEEecC
Q 019990 156 LTRLDHNRAMGQISERLKVHVSDVKNVIIWGNH 188 (332)
Q Consensus 156 ~t~l~~~r~~~~~a~~~~v~~~~v~~~~V~G~h 188 (332)
-||+..+++.+-+++..+.+...+|.|++.|-|
T Consensus 144 ~sKlm~E~iL~d~~~a~~~~~v~LRYFN~aGA~ 176 (329)
T COG1087 144 RSKLMSEEILRDAAKANPFKVVILRYFNVAGAC 176 (329)
T ss_pred hHHHHHHHHHHHHHHhCCCcEEEEEecccccCC
Confidence 999999999999999999999999999999965
|
|
| >KOG1502 consensus Flavonol reductase/cinnamoyl-CoA reductase [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=99.59 E-value=8.1e-15 Score=132.78 Aligned_cols=173 Identities=16% Similarity=0.105 Sum_probs=121.0
Q ss_pred CCcEEEEEcCCChhHHHHHHHHHhcccCCCCCCeEEEEEecccchhhhhhhHhhhhhhc---cCCccceEEeCCHHHHhC
Q 019990 4 NPLRVLVTGAAGQIGYALVPMIARGIMLGPDQPVILHMLDIEPAAEALNGVKMELIDAA---FPLLKGVVATTDVVEACK 80 (332)
Q Consensus 4 ~~~kI~VtGaaG~IGs~l~~~L~~~~~~~~~~~~~i~l~D~~~~~~~~~~~~~dl~~~~---~~~~~~v~~~~~~~~a~~ 80 (332)
.+++|+||||+||||++++..|++.|+ +|+-.-+++.+++-.....+|.... ..+..|+.....+.++++
T Consensus 5 ~~~~VcVTGAsGfIgswivk~LL~rGY-------~V~gtVR~~~~~k~~~~L~~l~~a~~~l~l~~aDL~d~~sf~~ai~ 77 (327)
T KOG1502|consen 5 EGKKVCVTGASGFIGSWIVKLLLSRGY-------TVRGTVRDPEDEKKTEHLRKLEGAKERLKLFKADLLDEGSFDKAID 77 (327)
T ss_pred CCcEEEEeCCchHHHHHHHHHHHhCCC-------EEEEEEcCcchhhhHHHHHhcccCcccceEEeccccccchHHHHHh
Confidence 568999999999999999999999998 6665544432221112333443221 122468888888999999
Q ss_pred CCcEEEEecCCCCCCC-CChhHHHhhhHHHHHHHHHHHHhhcCCCcEEEEEeCChhhHHHH---------HHHHCCCCCC
Q 019990 81 DVNIAVMVGGFPRKEG-MERKDVMSKNVSIYKAQASALEKHAAPNCKVLVVANPANTNALI---------LKEFAPSIPA 150 (332)
Q Consensus 81 ~aDiVi~~ag~~~~~~-~~~~~~~~~N~~~~~~i~~~i~~~~~~~~~viv~snp~~~~~~~---------~~~~~~~~~~ 150 (332)
+||.|||+|....... .++.+++..+++++.+++++|+++. .++-+|+|++...+.+- +-+ +.+..
T Consensus 78 gcdgVfH~Asp~~~~~~~~e~~li~pav~Gt~nVL~ac~~~~--sVkrvV~TSS~aAv~~~~~~~~~~~vvdE--~~wsd 153 (327)
T KOG1502|consen 78 GCDGVFHTASPVDFDLEDPEKELIDPAVKGTKNVLEACKKTK--SVKRVVYTSSTAAVRYNGPNIGENSVVDE--ESWSD 153 (327)
T ss_pred CCCEEEEeCccCCCCCCCcHHhhhhHHHHHHHHHHHHHhccC--CcceEEEeccHHHhccCCcCCCCCccccc--ccCCc
Confidence 9999999998643322 2355789999999999999999984 67666666654322210 000 01111
Q ss_pred -------CcEEEeecccHHHHHHHHHHHcCCCCCCeeeeEEEec
Q 019990 151 -------KNITCLTRLDHNRAMGQISERLKVHVSDVKNVIIWGN 187 (332)
Q Consensus 151 -------~~i~~~t~l~~~r~~~~~a~~~~v~~~~v~~~~V~G~ 187 (332)
+.-|..++.-+++....+|+.-+++...+-+..|+|+
T Consensus 154 ~~~~~~~~~~Y~~sK~lAEkaAw~fa~e~~~~lv~inP~lV~GP 197 (327)
T KOG1502|consen 154 LDFCRCKKLWYALSKTLAEKAAWEFAKENGLDLVTINPGLVFGP 197 (327)
T ss_pred HHHHHhhHHHHHHHHHHHHHHHHHHHHhCCccEEEecCCceECC
Confidence 1136678888999999999999999888888888887
|
|
| >PRK15181 Vi polysaccharide biosynthesis protein TviC; Provisional | Back alignment and domain information |
|---|
Probab=99.51 E-value=4.2e-14 Score=132.73 Aligned_cols=173 Identities=16% Similarity=0.107 Sum_probs=115.3
Q ss_pred CCcEEEEEcCCChhHHHHHHHHHhcccCCCCCCeEEEEEecccchhhhhhhHhhhh----hh---cc-CCccceEEeCCH
Q 019990 4 NPLRVLVTGAAGQIGYALVPMIARGIMLGPDQPVILHMLDIEPAAEALNGVKMELI----DA---AF-PLLKGVVATTDV 75 (332)
Q Consensus 4 ~~~kI~VtGaaG~IGs~l~~~L~~~~~~~~~~~~~i~l~D~~~~~~~~~~~~~dl~----~~---~~-~~~~~v~~~~~~ 75 (332)
.++||+||||+||||++|+..|++.+. +|+.+|+.... ......++. .. .. ....|+.....+
T Consensus 14 ~~~~vlVtGatGfiG~~lv~~L~~~g~-------~V~~~d~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~Di~d~~~l 84 (348)
T PRK15181 14 APKRWLITGVAGFIGSGLLEELLFLNQ-------TVIGLDNFSTG--YQHNLDDVRTSVSEEQWSRFIFIQGDIRKFTDC 84 (348)
T ss_pred cCCEEEEECCccHHHHHHHHHHHHCCC-------EEEEEeCCCCc--chhhhhhhhhccccccCCceEEEEccCCCHHHH
Confidence 357999999999999999999998875 89999874311 000000110 00 00 112355444455
Q ss_pred HHHhCCCcEEEEecCCCCCC--CCChhHHHhhhHHHHHHHHHHHHhhcCCCcEEEEEeCChhhHHH----HHHHHCCCCC
Q 019990 76 VEACKDVNIAVMVGGFPRKE--GMERKDVMSKNVSIYKAQASALEKHAAPNCKVLVVANPANTNAL----ILKEFAPSIP 149 (332)
Q Consensus 76 ~~a~~~aDiVi~~ag~~~~~--~~~~~~~~~~N~~~~~~i~~~i~~~~~~~~~viv~snp~~~~~~----~~~~~~~~~~ 149 (332)
.+.++++|+|||+|+....+ ........+.|+.++.++++++++.+ .. ++|++|+. .+... ...+. ....
T Consensus 85 ~~~~~~~d~ViHlAa~~~~~~~~~~~~~~~~~Nv~gt~nll~~~~~~~-~~-~~v~~SS~-~vyg~~~~~~~~e~-~~~~ 160 (348)
T PRK15181 85 QKACKNVDYVLHQAALGSVPRSLKDPIATNSANIDGFLNMLTAARDAH-VS-SFTYAASS-STYGDHPDLPKIEE-RIGR 160 (348)
T ss_pred HHHhhCCCEEEECccccCchhhhhCHHHHHHHHHHHHHHHHHHHHHcC-CC-eEEEeech-HhhCCCCCCCCCCC-CCCC
Confidence 66688999999999864321 12234567899999999999999874 22 66766642 11000 00111 1223
Q ss_pred CCcEEEeecccHHHHHHHHHHHcCCCCCCeeeeEEEecCC
Q 019990 150 AKNITCLTRLDHNRAMGQISERLKVHVSDVKNVIIWGNHS 189 (332)
Q Consensus 150 ~~~i~~~t~l~~~r~~~~~a~~~~v~~~~v~~~~V~G~hg 189 (332)
|...|+.+|+..+++...+++..+++...+|.++|||++.
T Consensus 161 p~~~Y~~sK~~~e~~~~~~~~~~~~~~~~lR~~~vyGp~~ 200 (348)
T PRK15181 161 PLSPYAVTKYVNELYADVFARSYEFNAIGLRYFNVFGRRQ 200 (348)
T ss_pred CCChhhHHHHHHHHHHHHHHHHhCCCEEEEEecceeCcCC
Confidence 4457999999999998888888999999999999999853
|
|
| >PF01073 3Beta_HSD: 3-beta hydroxysteroid dehydrogenase/isomerase family; InterPro: IPR002225 The enzyme 3 beta-hydroxysteroid dehydrogenase/5-ene-4-ene isomerase (3 beta-HSD) catalyses the oxidation and isomerisation of 5-ene-3 beta-hydroxypregnene and 5-ene-hydroxyandrostene steroid precursors into the corresponding 4-ene-ketosteroids necessary for the formation of all classes of steroid hormones | Back alignment and domain information |
|---|
Probab=99.49 E-value=3.2e-14 Score=129.38 Aligned_cols=178 Identities=16% Similarity=0.197 Sum_probs=115.5
Q ss_pred EEEcCCChhHHHHHHHHHhcccCCCCCCeEEEEEecccchhhhhhhHhhhhhhcc--CCccceEEeCCHHHHhCCCcEEE
Q 019990 9 LVTGAAGQIGYALVPMIARGIMLGPDQPVILHMLDIEPAAEALNGVKMELIDAAF--PLLKGVVATTDVVEACKDVNIAV 86 (332)
Q Consensus 9 ~VtGaaG~IGs~l~~~L~~~~~~~~~~~~~i~l~D~~~~~~~~~~~~~dl~~~~~--~~~~~v~~~~~~~~a~~~aDiVi 86 (332)
+||||+||+|++++..|++.+.. .+|+.+|+....... .++..... ....|++...++.++++++|+||
T Consensus 1 LVTGgsGflG~~iv~~Ll~~g~~-----~~Vr~~d~~~~~~~~----~~~~~~~~~~~~~~Di~d~~~l~~a~~g~d~V~ 71 (280)
T PF01073_consen 1 LVTGGSGFLGSHIVRQLLERGYI-----YEVRVLDRSPPPKFL----KDLQKSGVKEYIQGDITDPESLEEALEGVDVVF 71 (280)
T ss_pred CEEcCCcHHHHHHHHHHHHCCCc-----eEEEEcccccccccc----hhhhcccceeEEEeccccHHHHHHHhcCCceEE
Confidence 58999999999999999998731 389999986532111 11222111 23467887888999999999999
Q ss_pred EecCCCCCCC-CChhHHHhhhHHHHHHHHHHHHhhcCCCcEEEEEeCChhhHH------HHH-HHHCCCCCCC--cEEEe
Q 019990 87 MVGGFPRKEG-MERKDVMSKNVSIYKAQASALEKHAAPNCKVLVVANPANTNA------LIL-KEFAPSIPAK--NITCL 156 (332)
Q Consensus 87 ~~ag~~~~~~-~~~~~~~~~N~~~~~~i~~~i~~~~~~~~~viv~snp~~~~~------~~~-~~~~~~~~~~--~i~~~ 156 (332)
|+|+.....+ .++..+.+.|+.++++++++|++.+ ++.+|+++.+.+.. ++. ......+++. ..|+-
T Consensus 72 H~Aa~~~~~~~~~~~~~~~vNV~GT~nvl~aa~~~~---VkrlVytSS~~vv~~~~~~~~~~~~dE~~~~~~~~~~~Y~~ 148 (280)
T PF01073_consen 72 HTAAPVPPWGDYPPEEYYKVNVDGTRNVLEAARKAG---VKRLVYTSSISVVFDNYKGDPIINGDEDTPYPSSPLDPYAE 148 (280)
T ss_pred EeCccccccCcccHHHHHHHHHHHHHHHHHHHHHcC---CCEEEEEcCcceeEeccCCCCcccCCcCCcccccccCchHH
Confidence 9998643333 4566789999999999999999874 33344443332211 111 0111223322 26788
Q ss_pred ecccHHHHHHHHHH---H--cCCCCCCeeeeEEEecCCCceeecccC
Q 019990 157 TRLDHNRAMGQISE---R--LKVHVSDVKNVIIWGNHSSTQYPDVNH 198 (332)
Q Consensus 157 t~l~~~r~~~~~a~---~--~~v~~~~v~~~~V~G~hg~~~v~~~s~ 198 (332)
||..++++...... . -.+....+|+..|||+.....+|.+.+
T Consensus 149 SK~~AE~~V~~a~~~~~~~g~~l~t~~lRP~~IyGp~d~~~~~~~~~ 195 (280)
T PF01073_consen 149 SKALAEKAVLEANGSELKNGGRLRTCALRPAGIYGPGDQRLVPRLVK 195 (280)
T ss_pred HHHHHHHHHHhhcccccccccceeEEEEeccEEeCcccccccchhhH
Confidence 88888877654333 1 236667789999999855555554443
|
3Beta_HSD; GO: 0003854 3-beta-hydroxy-delta5-steroid dehydrogenase activity, 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0006694 steroid biosynthetic process, 0055114 oxidation-reduction process |
| >KOG1429 consensus dTDP-glucose 4-6-dehydratase/UDP-glucuronic acid decarboxylase [Carbohydrate transport and metabolism; Cell wall/membrane/envelope biogenesis] | Back alignment and domain information |
|---|
Probab=99.48 E-value=2.9e-14 Score=124.72 Aligned_cols=190 Identities=14% Similarity=0.051 Sum_probs=128.7
Q ss_pred CCCcEEEEEcCCChhHHHHHHHHHhcccCCCCCCeEEEEEecccchhhhhhhHhhhhhhccCCccceEEeCCHHHHhCCC
Q 019990 3 KNPLRVLVTGAAGQIGYALVPMIARGIMLGPDQPVILHMLDIEPAAEALNGVKMELIDAAFPLLKGVVATTDVVEACKDV 82 (332)
Q Consensus 3 ~~~~kI~VtGaaG~IGs~l~~~L~~~~~~~~~~~~~i~l~D~~~~~~~~~~~~~dl~~~~~~~~~~v~~~~~~~~a~~~a 82 (332)
.+++||+||||+|||||||+..|+..++ +|..+|... .+.+..+.+....-..++....-....+..+
T Consensus 25 ~~~lrI~itGgaGFIgSHLvdkLm~egh-------~VIa~Dn~f-----tg~k~n~~~~~~~~~fel~~hdv~~pl~~ev 92 (350)
T KOG1429|consen 25 SQNLRILITGGAGFIGSHLVDKLMTEGH-------EVIALDNYF-----TGRKENLEHWIGHPNFELIRHDVVEPLLKEV 92 (350)
T ss_pred CCCcEEEEecCcchHHHHHHHHHHhcCC-------eEEEEeccc-----ccchhhcchhccCcceeEEEeechhHHHHHh
Confidence 3578999999999999999999998875 899999743 2333444443221122333333344567899
Q ss_pred cEEEEecCCCCCCC--CChhHHHhhhHHHHHHHHHHHHhhcCCCcEEEEEeCCh---hhHH-H---HHHHHCCCCCCCcE
Q 019990 83 NIAVMVGGFPRKEG--MERKDVMSKNVSIYKAQASALEKHAAPNCKVLVVANPA---NTNA-L---ILKEFAPSIPAKNI 153 (332)
Q Consensus 83 DiVi~~ag~~~~~~--~~~~~~~~~N~~~~~~i~~~i~~~~~~~~~viv~snp~---~~~~-~---~~~~~~~~~~~~~i 153 (332)
|-|+|+|.....++ .+....+..|.-++.+++..+++.+ ++++.+|... +... + ..|-....+.++..
T Consensus 93 D~IyhLAapasp~~y~~npvktIktN~igtln~lglakrv~---aR~l~aSTseVYgdp~~hpq~e~ywg~vnpigpr~c 169 (350)
T KOG1429|consen 93 DQIYHLAAPASPPHYKYNPVKTIKTNVIGTLNMLGLAKRVG---ARFLLASTSEVYGDPLVHPQVETYWGNVNPIGPRSC 169 (350)
T ss_pred hhhhhhccCCCCcccccCccceeeecchhhHHHHHHHHHhC---ceEEEeecccccCCcccCCCccccccccCcCCchhh
Confidence 99999997643332 2334456778888889888888874 5777777421 1000 0 00111122444556
Q ss_pred EEeecccHHHHHHHHHHHcCCCCCCeeeeEEEecCC----CceeecccCcccccCCCCcchh
Q 019990 154 TCLTRLDHNRAMGQISERLKVHVSDVKNVIIWGNHS----STQYPDVNHATVTTSKGEKPVR 211 (332)
Q Consensus 154 ~~~t~l~~~r~~~~~a~~~~v~~~~v~~~~V~G~hg----~~~v~~~s~~~v~~~~~~~p~~ 211 (332)
|.-.+..++++++.+.+..|+.....|.++.||+.+ ...+..|+.+.+ .+.|++
T Consensus 170 ydegKr~aE~L~~~y~k~~giE~rIaRifNtyGPrm~~~dgrvvsnf~~q~l----r~eplt 227 (350)
T KOG1429|consen 170 YDEGKRVAETLCYAYHKQEGIEVRIARIFNTYGPRMHMDDGRVVSNFIAQAL----RGEPLT 227 (350)
T ss_pred hhHHHHHHHHHHHHhhcccCcEEEEEeeecccCCccccCCChhhHHHHHHHh----cCCCeE
Confidence 777899999999999999999999999999999865 456666666666 555554
|
|
| >PF02719 Polysacc_synt_2: Polysaccharide biosynthesis protein; InterPro: IPR003869 This domain is found in diverse bacterial polysaccharide biosynthesis proteins including the CapD protein from Staphylococcus aureus [], the WalL protein, mannosyl-transferase [], and several putative epimerases | Back alignment and domain information |
|---|
Probab=99.48 E-value=2.6e-14 Score=128.35 Aligned_cols=177 Identities=19% Similarity=0.222 Sum_probs=115.6
Q ss_pred EEEEcCCChhHHHHHHHHHhcccCCCCCCeEEEEEecccchhhhhhhHhhhh----hhc-----cCCccceEEeCCHHHH
Q 019990 8 VLVTGAAGQIGYALVPMIARGIMLGPDQPVILHMLDIEPAAEALNGVKMELI----DAA-----FPLLKGVVATTDVVEA 78 (332)
Q Consensus 8 I~VtGaaG~IGs~l~~~L~~~~~~~~~~~~~i~l~D~~~~~~~~~~~~~dl~----~~~-----~~~~~~v~~~~~~~~a 78 (332)
|+||||+|+||+.|+.+|++.+. .+|+++|++++ .+.....++. +.. .+...|+++...+.++
T Consensus 1 VLVTGa~GSIGseL~rql~~~~p------~~lil~d~~E~--~l~~l~~~l~~~~~~~~v~~~~~~vigDvrd~~~l~~~ 72 (293)
T PF02719_consen 1 VLVTGAGGSIGSELVRQLLRYGP------KKLILFDRDEN--KLYELERELRSRFPDPKVRFEIVPVIGDVRDKERLNRI 72 (293)
T ss_dssp EEEETTTSHHHHHHHHHHHCCB-------SEEEEEES-HH--HHHHHHHHCHHHC--TTCEEEEE--CTSCCHHHHHHHH
T ss_pred CEEEccccHHHHHHHHHHHhcCC------CeEEEeCCChh--HHHHHHHHHhhcccccCcccccCceeecccCHHHHHHH
Confidence 79999999999999999998764 38999999753 3444444442 111 1235677777677788
Q ss_pred hC--CCcEEEEecCCCCCC--CCChhHHHhhhHHHHHHHHHHHHhhcCCCcEEEEEeCChhhHHHHHHHHCCCCCCCcEE
Q 019990 79 CK--DVNIAVMVGGFPRKE--GMERKDVMSKNVSIYKAQASALEKHAAPNCKVLVVANPANTNALILKEFAPSIPAKNIT 154 (332)
Q Consensus 79 ~~--~aDiVi~~ag~~~~~--~~~~~~~~~~N~~~~~~i~~~i~~~~~~~~~viv~snp~~~~~~~~~~~~~~~~~~~i~ 154 (332)
++ +.|+|||+|+..+-+ +....+.++.|+-+++++++++.+++ .+ ++|.+|. | ..-+|.+++
T Consensus 73 ~~~~~pdiVfHaAA~KhVpl~E~~p~eav~tNv~GT~nv~~aa~~~~-v~-~~v~IST--D----------KAv~Ptnvm 138 (293)
T PF02719_consen 73 FEEYKPDIVFHAAALKHVPLMEDNPFEAVKTNVLGTQNVAEAAIEHG-VE-RFVFIST--D----------KAVNPTNVM 138 (293)
T ss_dssp TT--T-SEEEE------HHHHCCCHHHHHHHHCHHHHHHHHHHHHTT--S-EEEEEEE--C----------GCSS--SHH
T ss_pred HhhcCCCEEEEChhcCCCChHHhCHHHHHHHHHHHHHHHHHHHHHcC-CC-EEEEccc--c----------ccCCCCcHH
Confidence 88 899999999874322 23345678999999999999999986 44 4555552 1 112344455
Q ss_pred EeecccHHHHHHHHHHHc---CCCCCCeeeeEEEecCCCceeecccCcccccCCCCcchh
Q 019990 155 CLTRLDHNRAMGQISERL---KVHVSDVKNVIIWGNHSSTQYPDVNHATVTTSKGEKPVR 211 (332)
Q Consensus 155 ~~t~l~~~r~~~~~a~~~---~v~~~~v~~~~V~G~hg~~~v~~~s~~~v~~~~~~~p~~ 211 (332)
|.||.-++++....+... +.....||.-||+|.. ++.+|.|.+.-- .|.|++
T Consensus 139 GatKrlaE~l~~~~~~~~~~~~t~f~~VRFGNVlgS~-GSVip~F~~Qi~----~g~PlT 193 (293)
T PF02719_consen 139 GATKRLAEKLVQAANQYSGNSDTKFSSVRFGNVLGSR-GSVIPLFKKQIK----NGGPLT 193 (293)
T ss_dssp HHHHHHHHHHHHHHCCTSSSS--EEEEEEE-EETTGT-TSCHHHHHHHHH----TTSSEE
T ss_pred HHHHHHHHHHHHHHhhhCCCCCcEEEEEEecceecCC-CcHHHHHHHHHH----cCCcce
Confidence 777877888877776665 4555668877887754 578999988877 788886
|
The CapD protein is required for biosynthesis of type 1 capsular polysaccharide.; GO: 0009058 biosynthetic process; PDB: 3PVZ_C 2GN8_B 2GN4_A 2GNA_B 2GN6_A 2GN9_A. |
| >PLN02166 dTDP-glucose 4,6-dehydratase | Back alignment and domain information |
|---|
Probab=99.47 E-value=1.9e-13 Score=131.75 Aligned_cols=170 Identities=14% Similarity=0.040 Sum_probs=110.8
Q ss_pred CCCcEEEEEcCCChhHHHHHHHHHhcccCCCCCCeEEEEEecccchhhhhhhHhhhhhhccCCccceEEeCCHHHHhCCC
Q 019990 3 KNPLRVLVTGAAGQIGYALVPMIARGIMLGPDQPVILHMLDIEPAAEALNGVKMELIDAAFPLLKGVVATTDVVEACKDV 82 (332)
Q Consensus 3 ~~~~kI~VtGaaG~IGs~l~~~L~~~~~~~~~~~~~i~l~D~~~~~~~~~~~~~dl~~~~~~~~~~v~~~~~~~~a~~~a 82 (332)
.++|||+||||+||||++|+..|++.|+ +|+.+|+.... . . ..+.+.......++...+-+..++.++
T Consensus 118 ~~~mkILVTGatGFIGs~Lv~~Ll~~G~-------~V~~ldr~~~~-~-~---~~~~~~~~~~~~~~~~~Di~~~~~~~~ 185 (436)
T PLN02166 118 RKRLRIVVTGGAGFVGSHLVDKLIGRGD-------EVIVIDNFFTG-R-K---ENLVHLFGNPRFELIRHDVVEPILLEV 185 (436)
T ss_pred cCCCEEEEECCccHHHHHHHHHHHHCCC-------EEEEEeCCCCc-c-H---hHhhhhccCCceEEEECccccccccCC
Confidence 3568999999999999999999999876 89999964210 0 0 011110000000111111123446789
Q ss_pred cEEEEecCCCC--CCCCChhHHHhhhHHHHHHHHHHHHhhcCCCcEEEEEeCChhhHHH----HHHHHC----CCCCCCc
Q 019990 83 NIAVMVGGFPR--KEGMERKDVMSKNVSIYKAQASALEKHAAPNCKVLVVANPANTNAL----ILKEFA----PSIPAKN 152 (332)
Q Consensus 83 DiVi~~ag~~~--~~~~~~~~~~~~N~~~~~~i~~~i~~~~~~~~~viv~snp~~~~~~----~~~~~~----~~~~~~~ 152 (332)
|+|||+|+... ....+..+.+..|+.++.++++++++++ .++|++|+. .+... ...+.. ..+.+..
T Consensus 186 D~ViHlAa~~~~~~~~~~p~~~~~~Nv~gT~nLleaa~~~g---~r~V~~SS~-~VYg~~~~~p~~E~~~~~~~p~~p~s 261 (436)
T PLN02166 186 DQIYHLACPASPVHYKYNPVKTIKTNVMGTLNMLGLAKRVG---ARFLLTSTS-EVYGDPLEHPQKETYWGNVNPIGERS 261 (436)
T ss_pred CEEEECceeccchhhccCHHHHHHHHHHHHHHHHHHHHHhC---CEEEEECcH-HHhCCCCCCCCCccccccCCCCCCCC
Confidence 99999997532 1112345678899999999999999874 366766652 11000 000100 0122345
Q ss_pred EEEeecccHHHHHHHHHHHcCCCCCCeeeeEEEecC
Q 019990 153 ITCLTRLDHNRAMGQISERLKVHVSDVKNVIIWGNH 188 (332)
Q Consensus 153 i~~~t~l~~~r~~~~~a~~~~v~~~~v~~~~V~G~h 188 (332)
.|+.+|...+++...+++..+++...+|.++|||++
T Consensus 262 ~Yg~SK~~aE~~~~~y~~~~~l~~~ilR~~~vYGp~ 297 (436)
T PLN02166 262 CYDEGKRTAETLAMDYHRGAGVEVRIARIFNTYGPR 297 (436)
T ss_pred chHHHHHHHHHHHHHHHHHhCCCeEEEEEccccCCC
Confidence 789999999999988999999999999999999985
|
|
| >PLN00198 anthocyanidin reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.47 E-value=4.2e-13 Score=125.32 Aligned_cols=179 Identities=11% Similarity=0.083 Sum_probs=114.9
Q ss_pred CCCcEEEEEcCCChhHHHHHHHHHhcccCCCCCCeEEEEEecccchhhhhhhHhhhhhh-cc-CCccceEEeCCHHHHhC
Q 019990 3 KNPLRVLVTGAAGQIGYALVPMIARGIMLGPDQPVILHMLDIEPAAEALNGVKMELIDA-AF-PLLKGVVATTDVVEACK 80 (332)
Q Consensus 3 ~~~~kI~VtGaaG~IGs~l~~~L~~~~~~~~~~~~~i~l~D~~~~~~~~~~~~~dl~~~-~~-~~~~~v~~~~~~~~a~~ 80 (332)
.++++|+||||+||||++|+..|++.|. +|++++++............+... .. ....|++...++.++++
T Consensus 7 ~~~~~vlItG~~GfIG~~l~~~L~~~g~-------~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~ 79 (338)
T PLN00198 7 TGKKTACVIGGTGFLASLLIKLLLQKGY-------AVNTTVRDPENQKKIAHLRALQELGDLKIFGADLTDEESFEAPIA 79 (338)
T ss_pred CCCCeEEEECCchHHHHHHHHHHHHCCC-------EEEEEECCCCCHHHHHHHHhcCCCCceEEEEcCCCChHHHHHHHh
Confidence 4568999999999999999999998875 776666543110000000011100 01 11245555555677788
Q ss_pred CCcEEEEecCCCCCC-CCChhHHHhhhHHHHHHHHHHHHhhcCCCcEEEEEeCChhhH-------HHHHHHH--------
Q 019990 81 DVNIAVMVGGFPRKE-GMERKDVMSKNVSIYKAQASALEKHAAPNCKVLVVANPANTN-------ALILKEF-------- 144 (332)
Q Consensus 81 ~aDiVi~~ag~~~~~-~~~~~~~~~~N~~~~~~i~~~i~~~~~~~~~viv~snp~~~~-------~~~~~~~-------- 144 (332)
++|+|||+|+..... ..+..+++..|+.++.++++++.+.. .-.+++++|+....- ...+.+.
T Consensus 80 ~~d~vih~A~~~~~~~~~~~~~~~~~nv~g~~~ll~a~~~~~-~~~~~v~~SS~~~~g~~~~~~~~~~~~E~~~~~~~~~ 158 (338)
T PLN00198 80 GCDLVFHVATPVNFASEDPENDMIKPAIQGVHNVLKACAKAK-SVKRVILTSSAAAVSINKLSGTGLVMNEKNWTDVEFL 158 (338)
T ss_pred cCCEEEEeCCCCccCCCChHHHHHHHHHHHHHHHHHHHHhcC-CccEEEEeecceeeeccCCCCCCceeccccCCchhhh
Confidence 999999999853222 12223466889999999999998863 123666666421100 0000000
Q ss_pred CCCCCCCcEEEeecccHHHHHHHHHHHcCCCCCCeeeeEEEecCC
Q 019990 145 APSIPAKNITCLTRLDHNRAMGQISERLKVHVSDVKNVIIWGNHS 189 (332)
Q Consensus 145 ~~~~~~~~i~~~t~l~~~r~~~~~a~~~~v~~~~v~~~~V~G~hg 189 (332)
....+|...|+.+|...+++...+++.+|++...+|.++|||++.
T Consensus 159 ~~~~~p~~~Y~~sK~~~E~~~~~~~~~~~~~~~~~R~~~vyGp~~ 203 (338)
T PLN00198 159 TSEKPPTWGYPASKTLAEKAAWKFAEENNIDLITVIPTLMAGPSL 203 (338)
T ss_pred hhcCCccchhHHHHHHHHHHHHHHHHhcCceEEEEeCCceECCCc
Confidence 001234557899999999999999999999999999999999853
|
|
| >COG1088 RfbB dTDP-D-glucose 4,6-dehydratase [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Probab=99.46 E-value=1.9e-13 Score=120.68 Aligned_cols=193 Identities=15% Similarity=0.078 Sum_probs=133.8
Q ss_pred cEEEEEcCCChhHHHHHHHHHhcccCCCCCCeEEEEEecccchhhhhhhHhhhhhh-ccCC-ccceEEeCCHHHHhC--C
Q 019990 6 LRVLVTGAAGQIGYALVPMIARGIMLGPDQPVILHMLDIEPAAEALNGVKMELIDA-AFPL-LKGVVATTDVVEACK--D 81 (332)
Q Consensus 6 ~kI~VtGaaG~IGs~l~~~L~~~~~~~~~~~~~i~l~D~~~~~~~~~~~~~dl~~~-~~~~-~~~v~~~~~~~~a~~--~ 81 (332)
|+++||||+|||||+.+..++.+..- .+|+.+|.-+...+... ..++.+. ...+ ..++.+...+.+.++ +
T Consensus 1 ~~iLVTGGaGFIGsnfvr~~~~~~~d-----~~v~~~DkLTYAgn~~~-l~~~~~~~~~~fv~~DI~D~~~v~~~~~~~~ 74 (340)
T COG1088 1 MKILVTGGAGFIGSNFVRYILNKHPD-----DHVVNLDKLTYAGNLEN-LADVEDSPRYRFVQGDICDRELVDRLFKEYQ 74 (340)
T ss_pred CcEEEecCcchHHHHHHHHHHhcCCC-----ceEEEEecccccCCHHH-HHhhhcCCCceEEeccccCHHHHHHHHHhcC
Confidence 57999999999999999998876431 26888886442222211 1122221 1112 356665556667776 6
Q ss_pred CcEEEEecCCC---CCCCCChhHHHhhhHHHHHHHHHHHHhhcCCCcEEEEEeC-Ch--hhH--HHHHHHHCCCCCCCcE
Q 019990 82 VNIAVMVGGFP---RKEGMERKDVMSKNVSIYKAQASALEKHAAPNCKVLVVAN-PA--NTN--ALILKEFAPSIPAKNI 153 (332)
Q Consensus 82 aDiVi~~ag~~---~~~~~~~~~~~~~N~~~~~~i~~~i~~~~~~~~~viv~sn-p~--~~~--~~~~~~~~~~~~~~~i 153 (332)
.|+|+|.|+-. |+- .....+++.|+-++..++++++++. ...+++-+|. -| +.. ...+.+. +.++|+.+
T Consensus 75 ~D~VvhfAAESHVDRSI-~~P~~Fi~TNv~GT~~LLEaar~~~-~~frf~HISTDEVYG~l~~~~~~FtE~-tp~~PsSP 151 (340)
T COG1088 75 PDAVVHFAAESHVDRSI-DGPAPFIQTNVVGTYTLLEAARKYW-GKFRFHHISTDEVYGDLGLDDDAFTET-TPYNPSSP 151 (340)
T ss_pred CCeEEEechhccccccc-cChhhhhhcchHHHHHHHHHHHHhc-ccceEEEeccccccccccCCCCCcccC-CCCCCCCC
Confidence 89999998643 222 2335688999999999999999995 3346666663 11 110 0123333 67999999
Q ss_pred EEeecccHHHHHHHHHHHcCCCCCCeeeeEEEecCC--CceeecccCcccccCCCCcchh
Q 019990 154 TCLTRLDHNRAMGQISERLKVHVSDVKNVIIWGNHS--STQYPDVNHATVTTSKGEKPVR 211 (332)
Q Consensus 154 ~~~t~l~~~r~~~~~a~~~~v~~~~v~~~~V~G~hg--~~~v~~~s~~~v~~~~~~~p~~ 211 (332)
|+.+|-.+..+.+.+.+.+|++....++.+-||+.. +..+|....-.+ .|+|+.
T Consensus 152 YSASKAasD~lVray~~TYglp~~ItrcSNNYGPyqfpEKlIP~~I~nal----~g~~lp 207 (340)
T COG1088 152 YSASKAASDLLVRAYVRTYGLPATITRCSNNYGPYQFPEKLIPLMIINAL----LGKPLP 207 (340)
T ss_pred cchhhhhHHHHHHHHHHHcCCceEEecCCCCcCCCcCchhhhHHHHHHHH----cCCCCc
Confidence 999999999999999999999999999999999843 778887765555 455553
|
|
| >PF02056 Glyco_hydro_4: Family 4 glycosyl hydrolase; InterPro: IPR001088 O-Glycosyl hydrolases 3 | Back alignment and domain information |
|---|
Probab=99.45 E-value=8.2e-12 Score=105.05 Aligned_cols=156 Identities=21% Similarity=0.251 Sum_probs=99.9
Q ss_pred EEEEEcCCChhHHHH--HHHHHhcccCCCCCCeEEEEEecccchhhhhhh---HhhhhhhccCCccceEEeCCHHHHhCC
Q 019990 7 RVLVTGAAGQIGYAL--VPMIARGIMLGPDQPVILHMLDIEPAAEALNGV---KMELIDAAFPLLKGVVATTDVVEACKD 81 (332)
Q Consensus 7 kI~VtGaaG~IGs~l--~~~L~~~~~~~~~~~~~i~l~D~~~~~~~~~~~---~~dl~~~~~~~~~~v~~~~~~~~a~~~ 81 (332)
||+|+|| |.+-... ...|.....++ ..+++|+|++. +++... ...+.... .....+..++|..+|++|
T Consensus 1 KI~iIGa-GS~~~~~~l~~~l~~~~~l~---~~ei~L~Did~--~RL~~~~~~~~~~~~~~-~~~~~v~~ttd~~eAl~g 73 (183)
T PF02056_consen 1 KITIIGA-GSTYFPLLLLGDLLRTEELS---GSEIVLMDIDE--ERLEIVERLARRMVEEA-GADLKVEATTDRREALEG 73 (183)
T ss_dssp EEEEETT-TSCCHHHHHHHHHHCTTTST---EEEEEEE-SCH--HHHHHHHHHHHHHHHHC-TTSSEEEEESSHHHHHTT
T ss_pred CEEEECC-chHhhHHHHHHHHhcCccCC---CcEEEEEcCCH--HHHHHHHHHHHHHHHhc-CCCeEEEEeCCHHHHhCC
Confidence 7999996 6554432 22333322221 24999999975 444421 11111111 112356778999999999
Q ss_pred CcEEEEecCC------------CCCCCCCh--------hH--HHhhhHHHHHHHHHHHHhhcCCCcEEEEEeCChhhHHH
Q 019990 82 VNIAVMVGGF------------PRKEGMER--------KD--VMSKNVSIYKAQASALEKHAAPNCKVLVVANPANTNAL 139 (332)
Q Consensus 82 aDiVi~~ag~------------~~~~~~~~--------~~--~~~~N~~~~~~i~~~i~~~~~~~~~viv~snp~~~~~~ 139 (332)
||+||.+..+ |.+.|... .. ..-++++.+.++++.++++| |+++++++|||+..++.
T Consensus 74 ADfVi~~irvGg~~~r~~De~Ip~k~Gi~~~~~eT~G~GG~~~alRtipv~~~ia~~i~~~~-PdAw~iNytNP~~~vt~ 152 (183)
T PF02056_consen 74 ADFVINQIRVGGLEAREIDEEIPLKYGIVGTIQETVGPGGFFRALRTIPVMLDIARDIEELC-PDAWLINYTNPMGIVTE 152 (183)
T ss_dssp ESEEEE---TTHHHHHHHHHHTGGCCTTT-BTTSSSTHHHHHHHHHHHHHHHHHHHHHHHHT-TTSEEEE-SSSHHHHHH
T ss_pred CCEEEEEeeecchHHHHHHHHHHHHhCCccccccccCccHHHHHHhhHHHHHHHHHHHHHhC-CCcEEEeccChHHHHHH
Confidence 9999998632 33333221 11 23467999999999999998 99999999999999999
Q ss_pred HHHHHCCCCCCCcEEEeecccHHHHHHHHHHHcCC
Q 019990 140 ILKEFAPSIPAKNITCLTRLDHNRAMGQISERLKV 174 (332)
Q Consensus 140 ~~~~~~~~~~~~~i~~~t~l~~~r~~~~~a~~~~v 174 (332)
.+.+. ++..+++|.|+- ..-....+|+.+|+
T Consensus 153 a~~r~---~~~~k~vGlCh~-~~~~~~~la~~L~~ 183 (183)
T PF02056_consen 153 ALSRY---TPKIKVVGLCHG-PQGTRRQLAKLLGM 183 (183)
T ss_dssp HHHHH---STTSEEEEE-SH-HHHHHHHHHHHHT-
T ss_pred HHHHh---CCCCCEEEECCC-HHHHHHHHHHHhCc
Confidence 88876 344679999987 45667778888874
|
2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 4 GH4 from CAZY comprises enzymes with several known activities; 6-phospho-beta-glucosidase (3.2.1.86 from EC); 6-phospho-alpha-glucosidase (3.2.1.122 from EC); alpha-galactosidase (3.2.1.22 from EC). 6-phospho-alpha-glucosidase requires both NAD(H) and divalent metal (Mn2+, Fe2+, Co2+, or Ni2+) for activity [].; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 1U8X_X 1S6Y_A 3FEF_B 1VJT_A 1UP4_A 1UP6_C 1UP7_E 1OBB_A. |
| >PLN02206 UDP-glucuronate decarboxylase | Back alignment and domain information |
|---|
Probab=99.43 E-value=5.8e-13 Score=128.56 Aligned_cols=169 Identities=14% Similarity=0.048 Sum_probs=108.9
Q ss_pred CCcEEEEEcCCChhHHHHHHHHHhcccCCCCCCeEEEEEecccchhhhhhhHhhhhhhccCCccceEEeCCHHHHhCCCc
Q 019990 4 NPLRVLVTGAAGQIGYALVPMIARGIMLGPDQPVILHMLDIEPAAEALNGVKMELIDAAFPLLKGVVATTDVVEACKDVN 83 (332)
Q Consensus 4 ~~~kI~VtGaaG~IGs~l~~~L~~~~~~~~~~~~~i~l~D~~~~~~~~~~~~~dl~~~~~~~~~~v~~~~~~~~a~~~aD 83 (332)
+.|||+||||+||||++|+..|++.++ +|+.+|+.... . ...... +...+ ..++...+-+..++.++|
T Consensus 118 ~~~kILVTGatGfIGs~Lv~~Ll~~G~-------~V~~ld~~~~~-~-~~~~~~--~~~~~-~~~~i~~D~~~~~l~~~D 185 (442)
T PLN02206 118 KGLRVVVTGGAGFVGSHLVDRLMARGD-------SVIVVDNFFTG-R-KENVMH--HFSNP-NFELIRHDVVEPILLEVD 185 (442)
T ss_pred CCCEEEEECcccHHHHHHHHHHHHCcC-------EEEEEeCCCcc-c-hhhhhh--hccCC-ceEEEECCccChhhcCCC
Confidence 458999999999999999999999875 78888863210 0 111000 00000 001111111234567899
Q ss_pred EEEEecCCCC--CCCCChhHHHhhhHHHHHHHHHHHHhhcCCCcEEEEEeCChhhHHH----HHHHHC----CCCCCCcE
Q 019990 84 IAVMVGGFPR--KEGMERKDVMSKNVSIYKAQASALEKHAAPNCKVLVVANPANTNAL----ILKEFA----PSIPAKNI 153 (332)
Q Consensus 84 iVi~~ag~~~--~~~~~~~~~~~~N~~~~~~i~~~i~~~~~~~~~viv~snp~~~~~~----~~~~~~----~~~~~~~i 153 (332)
+|||+|+... ....+..+.++.|+.++.++++++++.+ .++|++|+.. +-.. ...+.. ....+...
T Consensus 186 ~ViHlAa~~~~~~~~~~p~~~~~~Nv~gt~nLleaa~~~g---~r~V~~SS~~-VYg~~~~~p~~E~~~~~~~P~~~~s~ 261 (442)
T PLN02206 186 QIYHLACPASPVHYKFNPVKTIKTNVVGTLNMLGLAKRVG---ARFLLTSTSE-VYGDPLQHPQVETYWGNVNPIGVRSC 261 (442)
T ss_pred EEEEeeeecchhhhhcCHHHHHHHHHHHHHHHHHHHHHhC---CEEEEECChH-HhCCCCCCCCCccccccCCCCCccch
Confidence 9999997532 1112345678899999999999999874 3677766531 1000 000100 01122346
Q ss_pred EEeecccHHHHHHHHHHHcCCCCCCeeeeEEEecC
Q 019990 154 TCLTRLDHNRAMGQISERLKVHVSDVKNVIIWGNH 188 (332)
Q Consensus 154 ~~~t~l~~~r~~~~~a~~~~v~~~~v~~~~V~G~h 188 (332)
|+.+|...+++...+++.++++...+|.++|||++
T Consensus 262 Y~~SK~~aE~~~~~y~~~~g~~~~ilR~~~vyGp~ 296 (442)
T PLN02206 262 YDEGKRTAETLTMDYHRGANVEVRIARIFNTYGPR 296 (442)
T ss_pred HHHHHHHHHHHHHHHHHHhCCCeEEEEeccccCCC
Confidence 88899999999888888899999999999999975
|
|
| >PLN02650 dihydroflavonol-4-reductase | Back alignment and domain information |
|---|
Probab=99.42 E-value=9e-13 Score=123.78 Aligned_cols=178 Identities=15% Similarity=0.106 Sum_probs=116.8
Q ss_pred CCCCCcEEEEEcCCChhHHHHHHHHHhcccCCCCCCeEEEEEecccchhhhhhhHhhhhhh-----ccC-CccceEEeCC
Q 019990 1 MAKNPLRVLVTGAAGQIGYALVPMIARGIMLGPDQPVILHMLDIEPAAEALNGVKMELIDA-----AFP-LLKGVVATTD 74 (332)
Q Consensus 1 m~~~~~kI~VtGaaG~IGs~l~~~L~~~~~~~~~~~~~i~l~D~~~~~~~~~~~~~dl~~~-----~~~-~~~~v~~~~~ 74 (332)
|-.+.++|+||||+||||++++..|++.|. +|++++++.. ..... .++... .+. ...++.....
T Consensus 1 ~~~~~k~iLVTGatGfIGs~l~~~L~~~G~-------~V~~~~r~~~--~~~~~-~~~~~~~~~~~~~~~v~~Dl~d~~~ 70 (351)
T PLN02650 1 MGSQKETVCVTGASGFIGSWLVMRLLERGY-------TVRATVRDPA--NVKKV-KHLLDLPGATTRLTLWKADLAVEGS 70 (351)
T ss_pred CCCCCCEEEEeCCcHHHHHHHHHHHHHCCC-------EEEEEEcCcc--hhHHH-HHHHhccCCCCceEEEEecCCChhh
Confidence 667788999999999999999999999875 7887776431 11111 111110 011 1245555556
Q ss_pred HHHHhCCCcEEEEecCCCCCCC-CChhHHHhhhHHHHHHHHHHHHhhcCCCcEEEEEeCChhhHH-----HHHHHHCC--
Q 019990 75 VVEACKDVNIAVMVGGFPRKEG-MERKDVMSKNVSIYKAQASALEKHAAPNCKVLVVANPANTNA-----LILKEFAP-- 146 (332)
Q Consensus 75 ~~~a~~~aDiVi~~ag~~~~~~-~~~~~~~~~N~~~~~~i~~~i~~~~~~~~~viv~snp~~~~~-----~~~~~~~~-- 146 (332)
+.++++++|+|||+|+...... .+....++.|+.++.++++++.+++ .-.++|++|+....-. +...+...
T Consensus 71 ~~~~~~~~d~ViH~A~~~~~~~~~~~~~~~~~Nv~gt~~ll~aa~~~~-~~~r~v~~SS~~~~~~~~~~~~~~~E~~~~~ 149 (351)
T PLN02650 71 FDDAIRGCTGVFHVATPMDFESKDPENEVIKPTVNGMLSIMKACAKAK-TVRRIVFTSSAGTVNVEEHQKPVYDEDCWSD 149 (351)
T ss_pred HHHHHhCCCEEEEeCCCCCCCCCCchhhhhhHHHHHHHHHHHHHHhcC-CceEEEEecchhhcccCCCCCCccCcccCCc
Confidence 6777889999999997532211 2223567889999999999998864 1136666665311100 00011000
Q ss_pred -----C-CCCCcEEEeecccHHHHHHHHHHHcCCCCCCeeeeEEEecCC
Q 019990 147 -----S-IPAKNITCLTRLDHNRAMGQISERLKVHVSDVKNVIIWGNHS 189 (332)
Q Consensus 147 -----~-~~~~~i~~~t~l~~~r~~~~~a~~~~v~~~~v~~~~V~G~hg 189 (332)
. .++...|+.+|+..+.+...+++.+|++...+|+.+|||+..
T Consensus 150 ~~~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~~gi~~~ilRp~~v~Gp~~ 198 (351)
T PLN02650 150 LDFCRRKKMTGWMYFVSKTLAEKAAWKYAAENGLDFISIIPTLVVGPFI 198 (351)
T ss_pred hhhhhccccccchHHHHHHHHHHHHHHHHHHcCCeEEEECCCceECCCC
Confidence 0 011236888999999999999999999999999999999853
|
|
| >PLN02695 GDP-D-mannose-3',5'-epimerase | Back alignment and domain information |
|---|
Probab=99.41 E-value=6.1e-13 Score=125.85 Aligned_cols=175 Identities=13% Similarity=0.082 Sum_probs=114.0
Q ss_pred CCCCCcEEEEEcCCChhHHHHHHHHHhcccCCCCCCeEEEEEecccchhhhhhhHhhhhhhccCCccceEEeCCHHHHhC
Q 019990 1 MAKNPLRVLVTGAAGQIGYALVPMIARGIMLGPDQPVILHMLDIEPAAEALNGVKMELIDAAFPLLKGVVATTDVVEACK 80 (332)
Q Consensus 1 m~~~~~kI~VtGaaG~IGs~l~~~L~~~~~~~~~~~~~i~l~D~~~~~~~~~~~~~dl~~~~~~~~~~v~~~~~~~~a~~ 80 (332)
|....|||+||||+||||++++..|++.|+ +|+.+|+.... .... ..........|+.....+.++++
T Consensus 17 ~~~~~~~IlVtGgtGfIG~~l~~~L~~~G~-------~V~~v~r~~~~-~~~~----~~~~~~~~~~Dl~d~~~~~~~~~ 84 (370)
T PLN02695 17 WPSEKLRICITGAGGFIASHIARRLKAEGH-------YIIASDWKKNE-HMSE----DMFCHEFHLVDLRVMENCLKVTK 84 (370)
T ss_pred CCCCCCEEEEECCccHHHHHHHHHHHhCCC-------EEEEEEecccc-cccc----ccccceEEECCCCCHHHHHHHHh
Confidence 445678999999999999999999998876 89999874311 1110 00000011234443344555678
Q ss_pred CCcEEEEecCCCCCCC---CChhHHHhhhHHHHHHHHHHHHhhcCCCcEEEEEeCChhh--H---H--HHHHHHC-CCCC
Q 019990 81 DVNIAVMVGGFPRKEG---MERKDVMSKNVSIYKAQASALEKHAAPNCKVLVVANPANT--N---A--LILKEFA-PSIP 149 (332)
Q Consensus 81 ~aDiVi~~ag~~~~~~---~~~~~~~~~N~~~~~~i~~~i~~~~~~~~~viv~snp~~~--~---~--~~~~~~~-~~~~ 149 (332)
++|+|||+|+.....+ .........|+.++.++++++++.+ .. ++|++|+..-. . . ..+.+.. ...+
T Consensus 85 ~~D~Vih~Aa~~~~~~~~~~~~~~~~~~N~~~t~nll~aa~~~~-vk-~~V~~SS~~vYg~~~~~~~~~~~~E~~~~p~~ 162 (370)
T PLN02695 85 GVDHVFNLAADMGGMGFIQSNHSVIMYNNTMISFNMLEAARING-VK-RFFYASSACIYPEFKQLETNVSLKESDAWPAE 162 (370)
T ss_pred CCCEEEEcccccCCccccccCchhhHHHHHHHHHHHHHHHHHhC-CC-EEEEeCchhhcCCccccCcCCCcCcccCCCCC
Confidence 9999999997532111 1122346779999999999998874 22 56666653100 0 0 0011100 1234
Q ss_pred CCcEEEeecccHHHHHHHHHHHcCCCCCCeeeeEEEecCC
Q 019990 150 AKNITCLTRLDHNRAMGQISERLKVHVSDVKNVIIWGNHS 189 (332)
Q Consensus 150 ~~~i~~~t~l~~~r~~~~~a~~~~v~~~~v~~~~V~G~hg 189 (332)
|...|+.++...+++...+++.++++...+|.++|||+++
T Consensus 163 p~s~Yg~sK~~~E~~~~~~~~~~g~~~~ilR~~~vyGp~~ 202 (370)
T PLN02695 163 PQDAYGLEKLATEELCKHYTKDFGIECRIGRFHNIYGPFG 202 (370)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHhCCCEEEEEECCccCCCC
Confidence 5557899999999998888899999999999999999865
|
|
| >PLN02572 UDP-sulfoquinovose synthase | Back alignment and domain information |
|---|
Probab=99.41 E-value=1.3e-12 Score=126.19 Aligned_cols=178 Identities=14% Similarity=0.175 Sum_probs=112.6
Q ss_pred CCcEEEEEcCCChhHHHHHHHHHhcccCCCCCCeEEEEEecccchh-h----hh------hhHhhhh---h---hccC-C
Q 019990 4 NPLRVLVTGAAGQIGYALVPMIARGIMLGPDQPVILHMLDIEPAAE-A----LN------GVKMELI---D---AAFP-L 65 (332)
Q Consensus 4 ~~~kI~VtGaaG~IGs~l~~~L~~~~~~~~~~~~~i~l~D~~~~~~-~----~~------~~~~dl~---~---~~~~-~ 65 (332)
++++|+||||+||||++|+..|++.|. +|+++|+..... . .. .....+. + .... .
T Consensus 46 ~~k~VLVTGatGfIGs~Lv~~L~~~G~-------~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~~v 118 (442)
T PLN02572 46 KKKKVMVIGGDGYCGWATALHLSKRGY-------EVAIVDNLCRRLFDHQLGLDSLTPIASIHERVRRWKEVSGKEIELY 118 (442)
T ss_pred cCCEEEEECCCcHHHHHHHHHHHHCCC-------eEEEEeccccccccccccccccccccchHHHHHHHHHhhCCcceEE
Confidence 468899999999999999999998875 889888421100 0 00 0000110 0 0111 1
Q ss_pred ccceEEeCCHHHHhC--CCcEEEEecCCCCCC---CCC--hhHHHhhhHHHHHHHHHHHHhhcCCCcEEEEEeCChhh--
Q 019990 66 LKGVVATTDVVEACK--DVNIAVMVGGFPRKE---GME--RKDVMSKNVSIYKAQASALEKHAAPNCKVLVVANPANT-- 136 (332)
Q Consensus 66 ~~~v~~~~~~~~a~~--~aDiVi~~ag~~~~~---~~~--~~~~~~~N~~~~~~i~~~i~~~~~~~~~viv~snp~~~-- 136 (332)
..|+.....+.++++ ++|+|||+|+....+ ..+ ....++.|+.++.++++++++++ ...+++.+|+..-.
T Consensus 119 ~~Dl~d~~~v~~~l~~~~~D~ViHlAa~~~~~~~~~~~~~~~~~~~~Nv~gt~nlleaa~~~g-v~~~~V~~SS~~vYG~ 197 (442)
T PLN02572 119 VGDICDFEFLSEAFKSFEPDAVVHFGEQRSAPYSMIDRSRAVFTQHNNVIGTLNVLFAIKEFA-PDCHLVKLGTMGEYGT 197 (442)
T ss_pred ECCCCCHHHHHHHHHhCCCCEEEECCCcccChhhhcChhhHHHHHHHHHHHHHHHHHHHHHhC-CCccEEEEecceecCC
Confidence 245555555666666 489999998653211 111 12345789999999999999885 33356655532100
Q ss_pred -HHHH----HH------HHC--CCCCCCcEEEeecccHHHHHHHHHHHcCCCCCCeeeeEEEecCC
Q 019990 137 -NALI----LK------EFA--PSIPAKNITCLTRLDHNRAMGQISERLKVHVSDVKNVIIWGNHS 189 (332)
Q Consensus 137 -~~~~----~~------~~~--~~~~~~~i~~~t~l~~~r~~~~~a~~~~v~~~~v~~~~V~G~hg 189 (332)
..++ +. +.. ....|...|+.+|+..+.+...+++.+|++...+|.++|||++.
T Consensus 198 ~~~~~~E~~i~~~~~~~e~~~~~~~~P~s~Yg~SK~a~E~l~~~~~~~~gl~~v~lR~~~vyGp~~ 263 (442)
T PLN02572 198 PNIDIEEGYITITHNGRTDTLPYPKQASSFYHLSKVHDSHNIAFTCKAWGIRATDLNQGVVYGVRT 263 (442)
T ss_pred CCCCCcccccccccccccccccCCCCCCCcchhHHHHHHHHHHHHHHhcCCCEEEEecccccCCCC
Confidence 0000 00 000 01234458999999999999999999999999999999999864
|
|
| >COG1086 Predicted nucleoside-diphosphate sugar epimerases [Cell envelope biogenesis, outer membrane / Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.39 E-value=1.5e-12 Score=124.57 Aligned_cols=201 Identities=19% Similarity=0.210 Sum_probs=136.3
Q ss_pred CCcEEEEEcCCChhHHHHHHHHHhcccCCCCCCeEEEEEecccchhhhhhhHhhhhhh----c-cCCccceEEeCCHHHH
Q 019990 4 NPLRVLVTGAAGQIGYALVPMIARGIMLGPDQPVILHMLDIEPAAEALNGVKMELIDA----A-FPLLKGVVATTDVVEA 78 (332)
Q Consensus 4 ~~~kI~VtGaaG~IGs~l~~~L~~~~~~~~~~~~~i~l~D~~~~~~~~~~~~~dl~~~----~-~~~~~~v~~~~~~~~a 78 (332)
+.++|+||||+|.||+.++.++++.+. .+++++|+++. ++.....++.+. . .++.+++.+...+..+
T Consensus 249 ~gK~vLVTGagGSiGsel~~qil~~~p------~~i~l~~~~E~--~~~~i~~el~~~~~~~~~~~~igdVrD~~~~~~~ 320 (588)
T COG1086 249 TGKTVLVTGGGGSIGSELCRQILKFNP------KEIILFSRDEY--KLYLIDMELREKFPELKLRFYIGDVRDRDRVERA 320 (588)
T ss_pred CCCEEEEeCCCCcHHHHHHHHHHhcCC------CEEEEecCchH--HHHHHHHHHHhhCCCcceEEEecccccHHHHHHH
Confidence 468899999999999999999998753 49999998753 333333344331 1 1235788887778888
Q ss_pred hCC--CcEEEEecCCCCCC--CCChhHHHhhhHHHHHHHHHHHHhhcCCCcEEEEEeCChhhHHHHHHHHCCCCCCCcEE
Q 019990 79 CKD--VNIAVMVGGFPRKE--GMERKDVMSKNVSIYKAQASALEKHAAPNCKVLVVANPANTNALILKEFAPSIPAKNIT 154 (332)
Q Consensus 79 ~~~--aDiVi~~ag~~~~~--~~~~~~~~~~N~~~~~~i~~~i~~~~~~~~~viv~snp~~~~~~~~~~~~~~~~~~~i~ 154 (332)
+++ .|+|+|.|+..+-| +....+-.+.|+-+++++++++.+++ -. +++..|. | ..-+|-+++
T Consensus 321 ~~~~kvd~VfHAAA~KHVPl~E~nP~Eai~tNV~GT~nv~~aa~~~~-V~-~~V~iST--D----------KAV~PtNvm 386 (588)
T COG1086 321 MEGHKVDIVFHAAALKHVPLVEYNPEEAIKTNVLGTENVAEAAIKNG-VK-KFVLIST--D----------KAVNPTNVM 386 (588)
T ss_pred HhcCCCceEEEhhhhccCcchhcCHHHHHHHhhHhHHHHHHHHHHhC-CC-EEEEEec--C----------cccCCchHh
Confidence 988 99999999875544 23345667899999999999999986 33 4444442 1 112344455
Q ss_pred EeecccHHHHHHHHHHHcC---CCCCCeeeeEEEecCCCceeecccCcccccCCCCcchhhhccccc----c-chhHHHH
Q 019990 155 CLTRLDHNRAMGQISERLK---VHVSDVKNVIIWGNHSSTQYPDVNHATVTTSKGEKPVREAVADDN----W-LNTEFIT 226 (332)
Q Consensus 155 ~~t~l~~~r~~~~~a~~~~---v~~~~v~~~~V~G~hg~~~v~~~s~~~v~~~~~~~p~~~~~~~~~----~-~~~~~~~ 226 (332)
|.||..++.+...+++..+ .....||.=||+|.. ++.+|+|.+.-- .|.|++ +.|.. | ...|-.+
T Consensus 387 GaTKr~aE~~~~a~~~~~~~~~T~f~~VRFGNVlGSr-GSViPlFk~QI~----~GgplT--vTdp~mtRyfMTI~EAv~ 459 (588)
T COG1086 387 GATKRLAEKLFQAANRNVSGTGTRFCVVRFGNVLGSR-GSVIPLFKKQIA----EGGPLT--VTDPDMTRFFMTIPEAVQ 459 (588)
T ss_pred hHHHHHHHHHHHHHhhccCCCCcEEEEEEecceecCC-CCCHHHHHHHHH----cCCCcc--ccCCCceeEEEEHHHHHH
Confidence 7788777877777766444 445556766777754 678999998776 677876 33431 3 2344555
Q ss_pred HHHhhHH
Q 019990 227 TVQQRGA 233 (332)
Q Consensus 227 ~v~~~~~ 233 (332)
.|-+++.
T Consensus 460 LVlqA~a 466 (588)
T COG1086 460 LVLQAGA 466 (588)
T ss_pred HHHHHHh
Confidence 5555544
|
|
| >TIGR02622 CDP_4_6_dhtase CDP-glucose 4,6-dehydratase | Back alignment and domain information |
|---|
Probab=99.37 E-value=1.7e-12 Score=121.84 Aligned_cols=186 Identities=13% Similarity=0.077 Sum_probs=117.2
Q ss_pred CcEEEEEcCCChhHHHHHHHHHhcccCCCCCCeEEEEEecccchhhhhhhHhhhhhh-cc-CCccceEEeCCHHHHhCC-
Q 019990 5 PLRVLVTGAAGQIGYALVPMIARGIMLGPDQPVILHMLDIEPAAEALNGVKMELIDA-AF-PLLKGVVATTDVVEACKD- 81 (332)
Q Consensus 5 ~~kI~VtGaaG~IGs~l~~~L~~~~~~~~~~~~~i~l~D~~~~~~~~~~~~~dl~~~-~~-~~~~~v~~~~~~~~a~~~- 81 (332)
+++|+||||+||||++++..|++.|. +|+.+|++... .......+... .. ....|+....++.+.+++
T Consensus 4 ~k~ilItGatG~IG~~l~~~L~~~G~-------~V~~~~r~~~~--~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~ 74 (349)
T TIGR02622 4 GKKVLVTGHTGFKGSWLSLWLLELGA-------EVYGYSLDPPT--SPNLFELLNLAKKIEDHFGDIRDAAKLRKAIAEF 74 (349)
T ss_pred CCEEEEECCCChhHHHHHHHHHHCCC-------EEEEEeCCCcc--chhHHHHHhhcCCceEEEccCCCHHHHHHHHhhc
Confidence 47899999999999999999998875 78888875421 11111111100 01 112355544455566664
Q ss_pred -CcEEEEecCCCCCC--CCChhHHHhhhHHHHHHHHHHHHhhcCCCcEEEEEeCChhhH----HHHHHHHCCCCCCCcEE
Q 019990 82 -VNIAVMVGGFPRKE--GMERKDVMSKNVSIYKAQASALEKHAAPNCKVLVVANPANTN----ALILKEFAPSIPAKNIT 154 (332)
Q Consensus 82 -aDiVi~~ag~~~~~--~~~~~~~~~~N~~~~~~i~~~i~~~~~~~~~viv~snp~~~~----~~~~~~~~~~~~~~~i~ 154 (332)
.|+|||+|+.+... .......++.|+....++++++++.+ ...++|++|+..-.- .....+. +..+|...|
T Consensus 75 ~~d~vih~A~~~~~~~~~~~~~~~~~~N~~g~~~ll~a~~~~~-~~~~iv~~SS~~vyg~~~~~~~~~e~-~~~~p~~~Y 152 (349)
T TIGR02622 75 KPEIVFHLAAQPLVRKSYADPLETFETNVMGTVNLLEAIRAIG-SVKAVVNVTSDKCYRNDEWVWGYRET-DPLGGHDPY 152 (349)
T ss_pred CCCEEEECCcccccccchhCHHHHHHHhHHHHHHHHHHHHhcC-CCCEEEEEechhhhCCCCCCCCCccC-CCCCCCCcc
Confidence 59999999854221 12234567889999999999998763 223666666531100 0001111 223455678
Q ss_pred EeecccHHHHHHHHHHHc-------CCCCCCeeeeEEEecCC---CceeecccCccc
Q 019990 155 CLTRLDHNRAMGQISERL-------KVHVSDVKNVIIWGNHS---STQYPDVNHATV 201 (332)
Q Consensus 155 ~~t~l~~~r~~~~~a~~~-------~v~~~~v~~~~V~G~hg---~~~v~~~s~~~v 201 (332)
+.+|...+++...+++.+ +++...+|..+|||+.. ...+|.+-+...
T Consensus 153 ~~sK~~~e~~~~~~~~~~~~~~~~~~i~~~~lR~~~vyGp~~~~~~~~~~~~~~~~~ 209 (349)
T TIGR02622 153 SSSKACAELVIASYRSSFFGVANFHGIKIASARAGNVIGGGDWAEDRLIPDVIRAFS 209 (349)
T ss_pred hhHHHHHHHHHHHHHHHhhcccccCCCcEEEEccCcccCCCcchhhhhhHHHHHHHh
Confidence 999999999888888765 88899999999999753 244565544444
|
Members of this protein family are CDP-glucose 4,6-dehydratase from a variety of Gram-negative and Gram-positive bacteria. Members typically are encoded next to a gene that encodes a glucose-1-phosphate cytidylyltransferase, which produces the substrate, CDP-D-glucose, used by this enzyme to produce CDP-4-keto-6-deoxyglucose. |
| >PLN02427 UDP-apiose/xylose synthase | Back alignment and domain information |
|---|
Probab=99.37 E-value=3.2e-12 Score=121.63 Aligned_cols=172 Identities=12% Similarity=0.069 Sum_probs=110.5
Q ss_pred CCcEEEEEcCCChhHHHHHHHHHhc-ccCCCCCCeEEEEEecccchhhhhhhHhhhh----hhccC-CccceEEeCCHHH
Q 019990 4 NPLRVLVTGAAGQIGYALVPMIARG-IMLGPDQPVILHMLDIEPAAEALNGVKMELI----DAAFP-LLKGVVATTDVVE 77 (332)
Q Consensus 4 ~~~kI~VtGaaG~IGs~l~~~L~~~-~~~~~~~~~~i~l~D~~~~~~~~~~~~~dl~----~~~~~-~~~~v~~~~~~~~ 77 (332)
++|||+||||+||||++|+..|++. +. +|+.+|+... ..... .... +.... ...|+....++.+
T Consensus 13 ~~~~VlVTGgtGfIGs~lv~~L~~~~g~-------~V~~l~r~~~--~~~~l-~~~~~~~~~~~~~~~~~Dl~d~~~l~~ 82 (386)
T PLN02427 13 KPLTICMIGAGGFIGSHLCEKLMTETPH-------KVLALDVYND--KIKHL-LEPDTVPWSGRIQFHRINIKHDSRLEG 82 (386)
T ss_pred cCcEEEEECCcchHHHHHHHHHHhcCCC-------EEEEEecCch--hhhhh-hccccccCCCCeEEEEcCCCChHHHHH
Confidence 5789999999999999999999986 44 7888886431 11110 0000 00011 1235554455677
Q ss_pred HhCCCcEEEEecCCCCC--CCCChhHHHhhhHHHHHHHHHHHHhhcCCCcEEEEEeCChhh----------HHHH-----
Q 019990 78 ACKDVNIAVMVGGFPRK--EGMERKDVMSKNVSIYKAQASALEKHAAPNCKVLVVANPANT----------NALI----- 140 (332)
Q Consensus 78 a~~~aDiVi~~ag~~~~--~~~~~~~~~~~N~~~~~~i~~~i~~~~~~~~~viv~snp~~~----------~~~~----- 140 (332)
+++++|+|||+|+.... ......+.+..|+....++++++++.+ .++|++|+..-. -.++
T Consensus 83 ~~~~~d~ViHlAa~~~~~~~~~~~~~~~~~n~~gt~~ll~aa~~~~---~r~v~~SS~~vYg~~~~~~~~e~~p~~~~~~ 159 (386)
T PLN02427 83 LIKMADLTINLAAICTPADYNTRPLDTIYSNFIDALPVVKYCSENN---KRLIHFSTCEVYGKTIGSFLPKDHPLRQDPA 159 (386)
T ss_pred HhhcCCEEEEcccccChhhhhhChHHHHHHHHHHHHHHHHHHHhcC---CEEEEEeeeeeeCCCcCCCCCcccccccccc
Confidence 78899999999986321 111223456779999999999998764 366766652100 0000
Q ss_pred ---HHHHCCC--C----CCCcEEEeecccHHHHHHHHHHHcCCCCCCeeeeEEEecC
Q 019990 141 ---LKEFAPS--I----PAKNITCLTRLDHNRAMGQISERLKVHVSDVKNVIIWGNH 188 (332)
Q Consensus 141 ---~~~~~~~--~----~~~~i~~~t~l~~~r~~~~~a~~~~v~~~~v~~~~V~G~h 188 (332)
..+..+. + .+...|+.+|...+++...+++..+++...+|.++|||++
T Consensus 160 ~~~~~e~~~~~~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~~g~~~~ilR~~~vyGp~ 216 (386)
T PLN02427 160 FYVLKEDESPCIFGSIEKQRWSYACAKQLIERLIYAEGAENGLEFTIVRPFNWIGPR 216 (386)
T ss_pred cccccccccccccCCCCccccchHHHHHHHHHHHHHHHhhcCCceEEecccceeCCC
Confidence 0000000 0 1223588899999999888888899999999999999985
|
|
| >PLN02989 cinnamyl-alcohol dehydrogenase family protein | Back alignment and domain information |
|---|
Probab=99.35 E-value=5.6e-12 Score=117.00 Aligned_cols=177 Identities=14% Similarity=0.061 Sum_probs=115.8
Q ss_pred CCCCCcEEEEEcCCChhHHHHHHHHHhcccCCCCCCeEEEEEecccchhhhhhhHhhhh---hh--cc-CCccceEEeCC
Q 019990 1 MAKNPLRVLVTGAAGQIGYALVPMIARGIMLGPDQPVILHMLDIEPAAEALNGVKMELI---DA--AF-PLLKGVVATTD 74 (332)
Q Consensus 1 m~~~~~kI~VtGaaG~IGs~l~~~L~~~~~~~~~~~~~i~l~D~~~~~~~~~~~~~dl~---~~--~~-~~~~~v~~~~~ 74 (332)
|.-+.++|+||||+||||++++..|++.|+ +|++++++.. ..... ..+. .. .. ....|+....+
T Consensus 1 ~~~~~k~vlVtG~~G~IG~~l~~~L~~~G~-------~V~~~~r~~~--~~~~~-~~~~~~~~~~~~~~~~~~D~~d~~~ 70 (325)
T PLN02989 1 MADGGKVVCVTGASGYIASWIVKLLLFRGY-------TINATVRDPK--DRKKT-DHLLALDGAKERLKLFKADLLDEGS 70 (325)
T ss_pred CCCCCCEEEEECCchHHHHHHHHHHHHCCC-------EEEEEEcCCc--chhhH-HHHHhccCCCCceEEEeCCCCCchH
Confidence 666678999999999999999999999886 7777665431 11111 1111 00 01 11245655556
Q ss_pred HHHHhCCCcEEEEecCCCCCC--CCChhHHHhhhHHHHHHHHHHHHhhcCCCcEEEEEeCChhhHHH--------HHHHH
Q 019990 75 VVEACKDVNIAVMVGGFPRKE--GMERKDVMSKNVSIYKAQASALEKHAAPNCKVLVVANPANTNAL--------ILKEF 144 (332)
Q Consensus 75 ~~~a~~~aDiVi~~ag~~~~~--~~~~~~~~~~N~~~~~~i~~~i~~~~~~~~~viv~snp~~~~~~--------~~~~~ 144 (332)
+.++++++|+|||+||..... ..+....+..|+.++.++++++.++. ...++|++|+-...... .+.+.
T Consensus 71 ~~~~~~~~d~vih~A~~~~~~~~~~~~~~~~~~n~~g~~~ll~a~~~~~-~~~~iv~~SS~~~~~~~~~~~~~~~~~~E~ 149 (325)
T PLN02989 71 FELAIDGCETVFHTASPVAITVKTDPQVELINPAVNGTINVLRTCTKVS-SVKRVILTSSMAAVLAPETKLGPNDVVDET 149 (325)
T ss_pred HHHHHcCCCEEEEeCCCCCCCCCCChHHHHHHHHHHHHHHHHHHHHHcC-CceEEEEecchhheecCCccCCCCCccCcC
Confidence 677788999999999864211 11224567889999999999998763 12366666642111000 01111
Q ss_pred CCCCCC------CcEEEeecccHHHHHHHHHHHcCCCCCCeeeeEEEecCC
Q 019990 145 APSIPA------KNITCLTRLDHNRAMGQISERLKVHVSDVKNVIIWGNHS 189 (332)
Q Consensus 145 ~~~~~~------~~i~~~t~l~~~r~~~~~a~~~~v~~~~v~~~~V~G~hg 189 (332)
+..+| ...|+.+|+..+++...+++.++++...+|.++|||+..
T Consensus 150 -~~~~p~~~~~~~~~Y~~sK~~~E~~~~~~~~~~~~~~~ilR~~~vyGp~~ 199 (325)
T PLN02989 150 -FFTNPSFAEERKQWYVLSKTLAEDAAWRFAKDNEIDLIVLNPGLVTGPIL 199 (325)
T ss_pred -CCCchhHhcccccchHHHHHHHHHHHHHHHHHcCCeEEEEcCCceeCCCC
Confidence 11111 246899999999999888999999999999999999753
|
|
| >PLN02662 cinnamyl-alcohol dehydrogenase family protein | Back alignment and domain information |
|---|
Probab=99.35 E-value=1e-11 Score=115.01 Aligned_cols=172 Identities=13% Similarity=0.063 Sum_probs=112.0
Q ss_pred CCcEEEEEcCCChhHHHHHHHHHhcccCCCCCCeEEEEEecccchhhhhhhHhhhhhh-----cc-CCccceEEeCCHHH
Q 019990 4 NPLRVLVTGAAGQIGYALVPMIARGIMLGPDQPVILHMLDIEPAAEALNGVKMELIDA-----AF-PLLKGVVATTDVVE 77 (332)
Q Consensus 4 ~~~kI~VtGaaG~IGs~l~~~L~~~~~~~~~~~~~i~l~D~~~~~~~~~~~~~dl~~~-----~~-~~~~~v~~~~~~~~ 77 (332)
+.++|+||||+||||++++..|++.|+ +|++++++... .. ....+... .. ....|+.....+.+
T Consensus 3 ~~~~ilVtGatGfIG~~l~~~L~~~g~-------~V~~~~r~~~~--~~-~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~ 72 (322)
T PLN02662 3 EGKVVCVTGASGYIASWLVKLLLQRGY-------TVKATVRDPND--PK-KTEHLLALDGAKERLHLFKANLLEEGSFDS 72 (322)
T ss_pred CCCEEEEECChHHHHHHHHHHHHHCCC-------EEEEEEcCCCc--hh-hHHHHHhccCCCCceEEEeccccCcchHHH
Confidence 457899999999999999999999886 78777764321 11 11111100 01 11245655556777
Q ss_pred HhCCCcEEEEecCCCCC-CCCChhHHHhhhHHHHHHHHHHHHhhcCCCcEEEEEeCChhhHHH---------HHHHHCCC
Q 019990 78 ACKDVNIAVMVGGFPRK-EGMERKDVMSKNVSIYKAQASALEKHAAPNCKVLVVANPANTNAL---------ILKEFAPS 147 (332)
Q Consensus 78 a~~~aDiVi~~ag~~~~-~~~~~~~~~~~N~~~~~~i~~~i~~~~~~~~~viv~snp~~~~~~---------~~~~~~~~ 147 (332)
+++++|+|||+|+.... ...+..+.++.|+.++.++++++++.... .++|++|+-. ...| .+.+. ..
T Consensus 73 ~~~~~d~Vih~A~~~~~~~~~~~~~~~~~nv~gt~~ll~a~~~~~~~-~~~v~~SS~~-~~~y~~~~~~~~~~~~E~-~~ 149 (322)
T PLN02662 73 VVDGCEGVFHTASPFYHDVTDPQAELIDPAVKGTLNVLRSCAKVPSV-KRVVVTSSMA-AVAYNGKPLTPDVVVDET-WF 149 (322)
T ss_pred HHcCCCEEEEeCCcccCCCCChHHHHHHHHHHHHHHHHHHHHhCCCC-CEEEEccCHH-HhcCCCcCCCCCCcCCcc-cC
Confidence 88999999999986422 12233357788999999999999876212 2566655421 1101 00110 00
Q ss_pred CCC------CcEEEeecccHHHHHHHHHHHcCCCCCCeeeeEEEecC
Q 019990 148 IPA------KNITCLTRLDHNRAMGQISERLKVHVSDVKNVIIWGNH 188 (332)
Q Consensus 148 ~~~------~~i~~~t~l~~~r~~~~~a~~~~v~~~~v~~~~V~G~h 188 (332)
..| ...|+.++...+++...+++..+++...+|..+|||+.
T Consensus 150 ~~p~~~~~~~~~Y~~sK~~~E~~~~~~~~~~~~~~~~lRp~~v~Gp~ 196 (322)
T PLN02662 150 SDPAFCEESKLWYVLSKTLAEEAAWKFAKENGIDMVTINPAMVIGPL 196 (322)
T ss_pred CChhHhhcccchHHHHHHHHHHHHHHHHHHcCCcEEEEeCCcccCCC
Confidence 111 12578889888888888888899999999999999975
|
|
| >PRK08125 bifunctional UDP-glucuronic acid decarboxylase/UDP-4-amino-4-deoxy-L-arabinose formyltransferase; Validated | Back alignment and domain information |
|---|
Probab=99.33 E-value=5.6e-12 Score=127.87 Aligned_cols=169 Identities=14% Similarity=0.121 Sum_probs=112.8
Q ss_pred CCcEEEEEcCCChhHHHHHHHHHhc-ccCCCCCCeEEEEEecccchhhhhhhHhhhhhhccC-CccceEEeCC-HHHHhC
Q 019990 4 NPLRVLVTGAAGQIGYALVPMIARG-IMLGPDQPVILHMLDIEPAAEALNGVKMELIDAAFP-LLKGVVATTD-VVEACK 80 (332)
Q Consensus 4 ~~~kI~VtGaaG~IGs~l~~~L~~~-~~~~~~~~~~i~l~D~~~~~~~~~~~~~dl~~~~~~-~~~~v~~~~~-~~~a~~ 80 (332)
++|||+||||+||||++|+..|++. ++ +|+.+|+... .... . +.+.... ...|++...+ +.++++
T Consensus 314 ~~~~VLVTGatGFIGs~Lv~~Ll~~~g~-------~V~~l~r~~~--~~~~-~--~~~~~~~~~~gDl~d~~~~l~~~l~ 381 (660)
T PRK08125 314 RRTRVLILGVNGFIGNHLTERLLRDDNY-------EVYGLDIGSD--AISR-F--LGHPRFHFVEGDISIHSEWIEYHIK 381 (660)
T ss_pred cCCEEEEECCCchHHHHHHHHHHhCCCc-------EEEEEeCCch--hhhh-h--cCCCceEEEeccccCcHHHHHHHhc
Confidence 5789999999999999999999974 55 8999997532 1110 0 0010011 1245543333 356688
Q ss_pred CCcEEEEecCCCCC--CCCChhHHHhhhHHHHHHHHHHHHhhcCCCcEEEEEeCChhhHH----HHHHHHCC-----CC-
Q 019990 81 DVNIAVMVGGFPRK--EGMERKDVMSKNVSIYKAQASALEKHAAPNCKVLVVANPANTNA----LILKEFAP-----SI- 148 (332)
Q Consensus 81 ~aDiVi~~ag~~~~--~~~~~~~~~~~N~~~~~~i~~~i~~~~~~~~~viv~snp~~~~~----~~~~~~~~-----~~- 148 (332)
++|+|||+|+.... ......+.++.|+..+.++++++++++ + ++|++|+.. +.. ..+.+..+ ..
T Consensus 382 ~~D~ViHlAa~~~~~~~~~~~~~~~~~Nv~~t~~ll~a~~~~~-~--~~V~~SS~~-vyg~~~~~~~~E~~~~~~~~p~~ 457 (660)
T PRK08125 382 KCDVVLPLVAIATPIEYTRNPLRVFELDFEENLKIIRYCVKYN-K--RIIFPSTSE-VYGMCTDKYFDEDTSNLIVGPIN 457 (660)
T ss_pred CCCEEEECccccCchhhccCHHHHHHhhHHHHHHHHHHHHhcC-C--eEEEEcchh-hcCCCCCCCcCccccccccCCCC
Confidence 99999999986431 122334577889999999999999874 2 666666521 100 00111000 00
Q ss_pred CCCcEEEeecccHHHHHHHHHHHcCCCCCCeeeeEEEecC
Q 019990 149 PAKNITCLTRLDHNRAMGQISERLKVHVSDVKNVIIWGNH 188 (332)
Q Consensus 149 ~~~~i~~~t~l~~~r~~~~~a~~~~v~~~~v~~~~V~G~h 188 (332)
++...|+.+|...+++...+++.++++...+|.++|||++
T Consensus 458 ~p~s~Yg~sK~~~E~~~~~~~~~~g~~~~ilR~~~vyGp~ 497 (660)
T PRK08125 458 KQRWIYSVSKQLLDRVIWAYGEKEGLRFTLFRPFNWMGPR 497 (660)
T ss_pred CCccchHHHHHHHHHHHHHHHHhcCCceEEEEEceeeCCC
Confidence 1223799999999999999999999999999999999985
|
|
| >PRK11908 NAD-dependent epimerase/dehydratase family protein; Provisional | Back alignment and domain information |
|---|
Probab=99.33 E-value=5.4e-12 Score=118.31 Aligned_cols=167 Identities=11% Similarity=0.071 Sum_probs=108.4
Q ss_pred CcEEEEEcCCChhHHHHHHHHHhc-ccCCCCCCeEEEEEecccchhhhhhhHhhhhh-hccC-CccceE-EeCCHHHHhC
Q 019990 5 PLRVLVTGAAGQIGYALVPMIARG-IMLGPDQPVILHMLDIEPAAEALNGVKMELID-AAFP-LLKGVV-ATTDVVEACK 80 (332)
Q Consensus 5 ~~kI~VtGaaG~IGs~l~~~L~~~-~~~~~~~~~~i~l~D~~~~~~~~~~~~~dl~~-~~~~-~~~~v~-~~~~~~~a~~ 80 (332)
||||+||||+||||++|+..|++. ++ +|+.+|+.. +... ++.. ..+. ...|+. ....+.++++
T Consensus 1 m~~ilVtGatGfiGs~l~~~L~~~~~~-------~V~~~~r~~--~~~~----~~~~~~~~~~~~~Dl~~~~~~~~~~~~ 67 (347)
T PRK11908 1 MKKVLILGVNGFIGHHLSKRILETTDW-------EVYGMDMQT--DRLG----DLVNHPRMHFFEGDITINKEWIEYHVK 67 (347)
T ss_pred CcEEEEECCCcHHHHHHHHHHHhCCCC-------eEEEEeCcH--HHHH----HhccCCCeEEEeCCCCCCHHHHHHHHc
Confidence 468999999999999999999874 44 889888642 1111 1111 0011 123443 2233456678
Q ss_pred CCcEEEEecCCCCC--CCCChhHHHhhhHHHHHHHHHHHHhhcCCCcEEEEEeCChhhHH----HHHHHHCCCC------
Q 019990 81 DVNIAVMVGGFPRK--EGMERKDVMSKNVSIYKAQASALEKHAAPNCKVLVVANPANTNA----LILKEFAPSI------ 148 (332)
Q Consensus 81 ~aDiVi~~ag~~~~--~~~~~~~~~~~N~~~~~~i~~~i~~~~~~~~~viv~snp~~~~~----~~~~~~~~~~------ 148 (332)
++|+|||+|+.... ...+....+..|+..+.++++++++.+ .++|++|+.. +.. ..+.+..+.+
T Consensus 68 ~~d~ViH~aa~~~~~~~~~~p~~~~~~n~~~~~~ll~aa~~~~---~~~v~~SS~~-vyg~~~~~~~~ee~~~~~~~~~~ 143 (347)
T PRK11908 68 KCDVILPLVAIATPATYVKQPLRVFELDFEANLPIVRSAVKYG---KHLVFPSTSE-VYGMCPDEEFDPEASPLVYGPIN 143 (347)
T ss_pred CCCEEEECcccCChHHhhcCcHHHHHHHHHHHHHHHHHHHhcC---CeEEEEecce-eeccCCCcCcCccccccccCcCC
Confidence 99999999875321 122234456788999999999998863 3667666531 100 0000100111
Q ss_pred CCCcEEEeecccHHHHHHHHHHHcCCCCCCeeeeEEEecC
Q 019990 149 PAKNITCLTRLDHNRAMGQISERLKVHVSDVKNVIIWGNH 188 (332)
Q Consensus 149 ~~~~i~~~t~l~~~r~~~~~a~~~~v~~~~v~~~~V~G~h 188 (332)
+|...|+.++...+++...+++..+++...+|.++|||++
T Consensus 144 ~p~~~Y~~sK~~~e~~~~~~~~~~~~~~~ilR~~~v~Gp~ 183 (347)
T PRK11908 144 KPRWIYACSKQLMDRVIWAYGMEEGLNFTLFRPFNWIGPG 183 (347)
T ss_pred CccchHHHHHHHHHHHHHHHHHHcCCCeEEEeeeeeeCCC
Confidence 2233688899999998888888899999999999999974
|
|
| >PLN02896 cinnamyl-alcohol dehydrogenase | Back alignment and domain information |
|---|
Probab=99.33 E-value=1.1e-11 Score=116.47 Aligned_cols=176 Identities=14% Similarity=0.081 Sum_probs=110.1
Q ss_pred CCcEEEEEcCCChhHHHHHHHHHhcccCCCCCCeEEEEEecccchhhhhhhHhhhhhh-cc-CCccceEEeCCHHHHhCC
Q 019990 4 NPLRVLVTGAAGQIGYALVPMIARGIMLGPDQPVILHMLDIEPAAEALNGVKMELIDA-AF-PLLKGVVATTDVVEACKD 81 (332)
Q Consensus 4 ~~~kI~VtGaaG~IGs~l~~~L~~~~~~~~~~~~~i~l~D~~~~~~~~~~~~~dl~~~-~~-~~~~~v~~~~~~~~a~~~ 81 (332)
..|||+||||+||||++++..|++.|. +|++++++. +.......++... .+ ....|+.....+.+++++
T Consensus 9 ~~~~vLVtG~~GfIG~~l~~~L~~~G~-------~V~~~~r~~--~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~ 79 (353)
T PLN02896 9 ATGTYCVTGATGYIGSWLVKLLLQRGY-------TVHATLRDP--AKSLHLLSKWKEGDRLRLFRADLQEEGSFDEAVKG 79 (353)
T ss_pred CCCEEEEECCCcHHHHHHHHHHHHCCC-------EEEEEeCCh--HHHHHHHHhhccCCeEEEEECCCCCHHHHHHHHcC
Confidence 468999999999999999999998875 788777642 1111111111110 01 112344444456677788
Q ss_pred CcEEEEecCCCCCC----CCChhHH-----HhhhHHHHHHHHHHHHhhcCCCcEEEEEeCChhhHH--------HHHHHH
Q 019990 82 VNIAVMVGGFPRKE----GMERKDV-----MSKNVSIYKAQASALEKHAAPNCKVLVVANPANTNA--------LILKEF 144 (332)
Q Consensus 82 aDiVi~~ag~~~~~----~~~~~~~-----~~~N~~~~~~i~~~i~~~~~~~~~viv~snp~~~~~--------~~~~~~ 144 (332)
+|+|||+|+..... ..+..+. +..|+.++.+++++++++. .-.+++++|+..-... ..+.+.
T Consensus 80 ~d~Vih~A~~~~~~~~~~~~~~~~~~~~n~~~~~~~g~~~ll~~~~~~~-~~~~~v~~SS~~vyg~~~~~~~~~~~~~E~ 158 (353)
T PLN02896 80 CDGVFHVAASMEFDVSSDHNNIEEYVQSKVIDPAIKGTLNVLKSCLKSK-TVKRVVFTSSISTLTAKDSNGRWRAVVDET 158 (353)
T ss_pred CCEEEECCccccCCccccccchhhhhhHHhHHHHHHHHHHHHHHHHhcC-CccEEEEEechhhccccccCCCCCCccCcc
Confidence 99999999864211 0122222 3344588899999998763 1236666665211100 001110
Q ss_pred C-C-------CCCCCcEEEeecccHHHHHHHHHHHcCCCCCCeeeeEEEecCC
Q 019990 145 A-P-------SIPAKNITCLTRLDHNRAMGQISERLKVHVSDVKNVIIWGNHS 189 (332)
Q Consensus 145 ~-~-------~~~~~~i~~~t~l~~~r~~~~~a~~~~v~~~~v~~~~V~G~hg 189 (332)
. . ..++...|+.+|+..+++...+++.++++...+|.++|||++.
T Consensus 159 ~~~p~~~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~~~~~~~~lR~~~vyGp~~ 211 (353)
T PLN02896 159 CQTPIDHVWNTKASGWVYVLSKLLTEEAAFKYAKENGIDLVSVITTTVAGPFL 211 (353)
T ss_pred cCCcHHHhhccCCCCccHHHHHHHHHHHHHHHHHHcCCeEEEEcCCcccCCCc
Confidence 0 0 0012237899999999999999999999999999999999854
|
|
| >PRK09987 dTDP-4-dehydrorhamnose reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.33 E-value=2.6e-12 Score=118.07 Aligned_cols=159 Identities=16% Similarity=0.153 Sum_probs=101.4
Q ss_pred cEEEEEcCCChhHHHHHHHHHhcccCCCCCCeEEEEEecccchhhhhhhHhhhhhhccCCccceEEeCCHHHHhC--CCc
Q 019990 6 LRVLVTGAAGQIGYALVPMIARGIMLGPDQPVILHMLDIEPAAEALNGVKMELIDAAFPLLKGVVATTDVVEACK--DVN 83 (332)
Q Consensus 6 ~kI~VtGaaG~IGs~l~~~L~~~~~~~~~~~~~i~l~D~~~~~~~~~~~~~dl~~~~~~~~~~v~~~~~~~~a~~--~aD 83 (332)
|||+||||+||||++++..|++.+ +++.+|+... . ...|+.....+.++++ ++|
T Consensus 1 m~iLVtG~~GfiGs~l~~~L~~~g--------~V~~~~~~~~--~--------------~~~Dl~d~~~~~~~~~~~~~D 56 (299)
T PRK09987 1 MNILLFGKTGQVGWELQRALAPLG--------NLIALDVHST--D--------------YCGDFSNPEGVAETVRKIRPD 56 (299)
T ss_pred CeEEEECCCCHHHHHHHHHhhccC--------CEEEeccccc--c--------------ccCCCCCHHHHHHHHHhcCCC
Confidence 479999999999999999998765 3666775320 0 1123333344555666 589
Q ss_pred EEEEecCCCCCC--CCChhHHHhhhHHHHHHHHHHHHhhcCCCcEEEEEeCCh---hh-HHHHHHHHCCCCCCCcEEEee
Q 019990 84 IAVMVGGFPRKE--GMERKDVMSKNVSIYKAQASALEKHAAPNCKVLVVANPA---NT-NALILKEFAPSIPAKNITCLT 157 (332)
Q Consensus 84 iVi~~ag~~~~~--~~~~~~~~~~N~~~~~~i~~~i~~~~~~~~~viv~snp~---~~-~~~~~~~~~~~~~~~~i~~~t 157 (332)
+|||+|+..... ..........|+..+.++++++++.+ .++|.+|+.. +. -.+ ..+ .....|...|+.+
T Consensus 57 ~Vih~Aa~~~~~~~~~~~~~~~~~N~~~~~~l~~aa~~~g---~~~v~~Ss~~Vy~~~~~~p-~~E-~~~~~P~~~Yg~s 131 (299)
T PRK09987 57 VIVNAAAHTAVDKAESEPEFAQLLNATSVEAIAKAANEVG---AWVVHYSTDYVFPGTGDIP-WQE-TDATAPLNVYGET 131 (299)
T ss_pred EEEECCccCCcchhhcCHHHHHHHHHHHHHHHHHHHHHcC---CeEEEEccceEECCCCCCC-cCC-CCCCCCCCHHHHH
Confidence 999999864321 12223345789999999999999874 3666666421 00 001 111 1223455578889
Q ss_pred cccHHHHHHHHHHHcCCCCCCeeeeEEEecCCCceeeccc
Q 019990 158 RLDHNRAMGQISERLKVHVSDVKNVIIWGNHSSTQYPDVN 197 (332)
Q Consensus 158 ~l~~~r~~~~~a~~~~v~~~~v~~~~V~G~hg~~~v~~~s 197 (332)
|+..+++...+ ..+...+|.++|||+.+.+.++.|-
T Consensus 132 K~~~E~~~~~~----~~~~~ilR~~~vyGp~~~~~~~~~~ 167 (299)
T PRK09987 132 KLAGEKALQEH----CAKHLIFRTSWVYAGKGNNFAKTML 167 (299)
T ss_pred HHHHHHHHHHh----CCCEEEEecceecCCCCCCHHHHHH
Confidence 98887766443 3345778999999986655555443
|
|
| >TIGR03589 PseB UDP-N-acetylglucosamine 4,6-dehydratase | Back alignment and domain information |
|---|
Probab=99.32 E-value=9.8e-12 Score=115.55 Aligned_cols=175 Identities=13% Similarity=0.157 Sum_probs=116.4
Q ss_pred CCcEEEEEcCCChhHHHHHHHHHhcccCCCCCCeEEEEEecccchhhhhhhHhhhhhhcc-CCccceEEeCCHHHHhCCC
Q 019990 4 NPLRVLVTGAAGQIGYALVPMIARGIMLGPDQPVILHMLDIEPAAEALNGVKMELIDAAF-PLLKGVVATTDVVEACKDV 82 (332)
Q Consensus 4 ~~~kI~VtGaaG~IGs~l~~~L~~~~~~~~~~~~~i~l~D~~~~~~~~~~~~~dl~~~~~-~~~~~v~~~~~~~~a~~~a 82 (332)
+.++|+||||+||||++++..|++.+. ..+|+++|++.. .......++..... ....|+....++.++++++
T Consensus 3 ~~k~vLVTGatG~IG~~l~~~L~~~g~-----~~~V~~~~r~~~--~~~~~~~~~~~~~~~~v~~Dl~d~~~l~~~~~~i 75 (324)
T TIGR03589 3 NNKSILITGGTGSFGKAFISRLLENYN-----PKKIIIYSRDEL--KQWEMQQKFPAPCLRFFIGDVRDKERLTRALRGV 75 (324)
T ss_pred CCCEEEEeCCCCHHHHHHHHHHHHhCC-----CcEEEEEcCChh--HHHHHHHHhCCCcEEEEEccCCCHHHHHHHHhcC
Confidence 457899999999999999999988641 027888886531 11111111111111 1224565555677778899
Q ss_pred cEEEEecCCCCCC--CCChhHHHhhhHHHHHHHHHHHHhhcCCCcEEEEEeCChhhHHHHHHHHCCCCCCCcEEEeeccc
Q 019990 83 NIAVMVGGFPRKE--GMERKDVMSKNVSIYKAQASALEKHAAPNCKVLVVANPANTNALILKEFAPSIPAKNITCLTRLD 160 (332)
Q Consensus 83 DiVi~~ag~~~~~--~~~~~~~~~~N~~~~~~i~~~i~~~~~~~~~viv~snp~~~~~~~~~~~~~~~~~~~i~~~t~l~ 160 (332)
|+|||+||....+ ..+..+.++.|+.++.++++++.+.+ . .++|++|+. ....|...|+.++..
T Consensus 76 D~Vih~Ag~~~~~~~~~~~~~~~~~Nv~g~~~ll~aa~~~~-~-~~iV~~SS~------------~~~~p~~~Y~~sK~~ 141 (324)
T TIGR03589 76 DYVVHAAALKQVPAAEYNPFECIRTNINGAQNVIDAAIDNG-V-KRVVALSTD------------KAANPINLYGATKLA 141 (324)
T ss_pred CEEEECcccCCCchhhcCHHHHHHHHHHHHHHHHHHHHHcC-C-CEEEEEeCC------------CCCCCCCHHHHHHHH
Confidence 9999999864321 22345678899999999999999864 2 366666652 112334467888888
Q ss_pred HHHHHHHHH---HHcCCCCCCeeeeEEEecCCCceeecccCcc
Q 019990 161 HNRAMGQIS---ERLKVHVSDVKNVIIWGNHSSTQYPDVNHAT 200 (332)
Q Consensus 161 ~~r~~~~~a---~~~~v~~~~v~~~~V~G~hg~~~v~~~s~~~ 200 (332)
.+++...++ +..|++...+|..+|+|+.+ +.+|.|.+..
T Consensus 142 ~E~l~~~~~~~~~~~gi~~~~lR~g~v~G~~~-~~i~~~~~~~ 183 (324)
T TIGR03589 142 SDKLFVAANNISGSKGTRFSVVRYGNVVGSRG-SVVPFFKSLK 183 (324)
T ss_pred HHHHHHHHHhhccccCcEEEEEeecceeCCCC-CcHHHHHHHH
Confidence 888776544 35789999999999999754 4566665443
|
This enzyme catalyzes the first step in the biosynthesis of pseudaminic acid, the conversion of UDP-N-acetylglucosamine to UDP-4-keto-6-deoxy-N-acetylglucosamine. These sequences are members of the broader pfam01073 (3-beta hydroxysteroid dehydrogenase/isomerase family) family. |
| >PLN02986 cinnamyl-alcohol dehydrogenase family protein | Back alignment and domain information |
|---|
Probab=99.31 E-value=2.3e-11 Score=112.78 Aligned_cols=175 Identities=12% Similarity=0.062 Sum_probs=112.9
Q ss_pred CCCCCcEEEEEcCCChhHHHHHHHHHhcccCCCCCCeEEEEEecccchhhhhhhHhhhhhh-----cc-CCccceEEeCC
Q 019990 1 MAKNPLRVLVTGAAGQIGYALVPMIARGIMLGPDQPVILHMLDIEPAAEALNGVKMELIDA-----AF-PLLKGVVATTD 74 (332)
Q Consensus 1 m~~~~~kI~VtGaaG~IGs~l~~~L~~~~~~~~~~~~~i~l~D~~~~~~~~~~~~~dl~~~-----~~-~~~~~v~~~~~ 74 (332)
|.-..++|+||||+||||++++..|++.|+ +|+...++.. ... ....+... .. ....|+.....
T Consensus 1 ~~~~~~~vlVTGatG~iG~~l~~~L~~~g~-------~V~~~~r~~~--~~~-~~~~~~~~~~~~~~~~~~~~Dl~~~~~ 70 (322)
T PLN02986 1 MNGGGKLVCVTGASGYIASWIVKLLLLRGY-------TVKATVRDLT--DRK-KTEHLLALDGAKERLKLFKADLLEESS 70 (322)
T ss_pred CCCCCCEEEEECCCcHHHHHHHHHHHHCCC-------EEEEEECCCc--chH-HHHHHHhccCCCCceEEEecCCCCcch
Confidence 544567999999999999999999998876 6765544321 111 11111110 00 12245655566
Q ss_pred HHHHhCCCcEEEEecCCCCC-CCCChhHHHhhhHHHHHHHHHHHHhhcCCCc-EEEEEeCChhhHHHH---------HHH
Q 019990 75 VVEACKDVNIAVMVGGFPRK-EGMERKDVMSKNVSIYKAQASALEKHAAPNC-KVLVVANPANTNALI---------LKE 143 (332)
Q Consensus 75 ~~~a~~~aDiVi~~ag~~~~-~~~~~~~~~~~N~~~~~~i~~~i~~~~~~~~-~viv~snp~~~~~~~---------~~~ 143 (332)
+.++++++|+|||+|+.... ...+..++++.|+.++.++++++++.. ++ ++|++|+.... .+. +.+
T Consensus 71 ~~~~~~~~d~vih~A~~~~~~~~~~~~~~~~~nv~gt~~ll~~~~~~~--~v~rvV~~SS~~~~-~~~~~~~~~~~~~~E 147 (322)
T PLN02986 71 FEQAIEGCDAVFHTASPVFFTVKDPQTELIDPALKGTINVLNTCKETP--SVKRVILTSSTAAV-LFRQPPIEANDVVDE 147 (322)
T ss_pred HHHHHhCCCEEEEeCCCcCCCCCCchhhhhHHHHHHHHHHHHHHHhcC--CccEEEEecchhhe-ecCCccCCCCCCcCc
Confidence 77788999999999986321 112333467889999999999998752 23 56666643211 000 001
Q ss_pred HCCCC-----CCCcEEEeecccHHHHHHHHHHHcCCCCCCeeeeEEEecC
Q 019990 144 FAPSI-----PAKNITCLTRLDHNRAMGQISERLKVHVSDVKNVIIWGNH 188 (332)
Q Consensus 144 ~~~~~-----~~~~i~~~t~l~~~r~~~~~a~~~~v~~~~v~~~~V~G~h 188 (332)
..... ++...|+.+|...+++...+++.++++...+|+.+|||+.
T Consensus 148 ~~~~~p~~~~~~~~~Y~~sK~~aE~~~~~~~~~~~~~~~~lrp~~v~Gp~ 197 (322)
T PLN02986 148 TFFSDPSLCRETKNWYPLSKILAENAAWEFAKDNGIDMVVLNPGFICGPL 197 (322)
T ss_pred ccCCChHHhhccccchHHHHHHHHHHHHHHHHHhCCeEEEEcccceeCCC
Confidence 00000 1234688899999999888888899999999999999974
|
|
| >PLN02214 cinnamoyl-CoA reductase | Back alignment and domain information |
|---|
Probab=99.31 E-value=7.1e-12 Score=117.37 Aligned_cols=172 Identities=15% Similarity=0.093 Sum_probs=114.6
Q ss_pred CcEEEEEcCCChhHHHHHHHHHhcccCCCCCCeEEEEEecccchhhhhhhHhhhhhh--cc-CCccceEEeCCHHHHhCC
Q 019990 5 PLRVLVTGAAGQIGYALVPMIARGIMLGPDQPVILHMLDIEPAAEALNGVKMELIDA--AF-PLLKGVVATTDVVEACKD 81 (332)
Q Consensus 5 ~~kI~VtGaaG~IGs~l~~~L~~~~~~~~~~~~~i~l~D~~~~~~~~~~~~~dl~~~--~~-~~~~~v~~~~~~~~a~~~ 81 (332)
+++|+||||+||||++++..|++.|+ +|+.++++... ........+... .. ....|+....++.+++++
T Consensus 10 ~~~vlVTGatGfIG~~l~~~L~~~G~-------~V~~~~r~~~~-~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~ 81 (342)
T PLN02214 10 GKTVCVTGAGGYIASWIVKILLERGY-------TVKGTVRNPDD-PKNTHLRELEGGKERLILCKADLQDYEALKAAIDG 81 (342)
T ss_pred CCEEEEECCCcHHHHHHHHHHHHCcC-------EEEEEeCCchh-hhHHHHHHhhCCCCcEEEEecCcCChHHHHHHHhc
Confidence 57899999999999999999999886 78888764321 011111111110 01 112455555567778899
Q ss_pred CcEEEEecCCCCCCCCChhHHHhhhHHHHHHHHHHHHhhcCCCcEEEEEeCChhhHH-------HHHHHHCC-----CCC
Q 019990 82 VNIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEKHAAPNCKVLVVANPANTNA-------LILKEFAP-----SIP 149 (332)
Q Consensus 82 aDiVi~~ag~~~~~~~~~~~~~~~N~~~~~~i~~~i~~~~~~~~~viv~snp~~~~~-------~~~~~~~~-----~~~ 149 (332)
+|+|||+|+... ....+.+..|+..+.++++++++.+ .. ++|++|+...+-. ..+.+..+ ..+
T Consensus 82 ~d~Vih~A~~~~---~~~~~~~~~nv~gt~~ll~aa~~~~-v~-r~V~~SS~~avyg~~~~~~~~~~~E~~~~~~~~~~~ 156 (342)
T PLN02214 82 CDGVFHTASPVT---DDPEQMVEPAVNGAKFVINAAAEAK-VK-RVVITSSIGAVYMDPNRDPEAVVDESCWSDLDFCKN 156 (342)
T ss_pred CCEEEEecCCCC---CCHHHHHHHHHHHHHHHHHHHHhcC-CC-EEEEeccceeeeccCCCCCCcccCcccCCChhhccc
Confidence 999999998642 2235578889999999999999874 22 5666664211100 01111100 011
Q ss_pred CCcEEEeecccHHHHHHHHHHHcCCCCCCeeeeEEEecCC
Q 019990 150 AKNITCLTRLDHNRAMGQISERLKVHVSDVKNVIIWGNHS 189 (332)
Q Consensus 150 ~~~i~~~t~l~~~r~~~~~a~~~~v~~~~v~~~~V~G~hg 189 (332)
+...|+.+|...+++...+++.+|++...+|..+|||++.
T Consensus 157 p~~~Y~~sK~~aE~~~~~~~~~~g~~~v~lRp~~vyGp~~ 196 (342)
T PLN02214 157 TKNWYCYGKMVAEQAAWETAKEKGVDLVVLNPVLVLGPPL 196 (342)
T ss_pred cccHHHHHHHHHHHHHHHHHHHcCCcEEEEeCCceECCCC
Confidence 2335788999999999888899999999999999999853
|
|
| >PRK10217 dTDP-glucose 4,6-dehydratase; Provisional | Back alignment and domain information |
|---|
Probab=99.29 E-value=8.2e-12 Score=117.35 Aligned_cols=176 Identities=11% Similarity=0.061 Sum_probs=111.5
Q ss_pred CcEEEEEcCCChhHHHHHHHHHhcccCCCCCCeEEEEEecccchhhhhhhHhhhhh-hccC-CccceEEeCCHHHHhC--
Q 019990 5 PLRVLVTGAAGQIGYALVPMIARGIMLGPDQPVILHMLDIEPAAEALNGVKMELID-AAFP-LLKGVVATTDVVEACK-- 80 (332)
Q Consensus 5 ~~kI~VtGaaG~IGs~l~~~L~~~~~~~~~~~~~i~l~D~~~~~~~~~~~~~dl~~-~~~~-~~~~v~~~~~~~~a~~-- 80 (332)
|+||+||||+||||++++..|++.+. ..+.++|........... ..+.. .... ...|+....++.++++
T Consensus 1 ~~~vlVtGatGfIG~~l~~~L~~~g~------~~v~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~ 73 (355)
T PRK10217 1 MRKILITGGAGFIGSALVRYIINETS------DAVVVVDKLTYAGNLMSL-APVAQSERFAFEKVDICDRAELARVFTEH 73 (355)
T ss_pred CcEEEEEcCCcHHHHHHHHHHHHcCC------CEEEEEecCccccchhhh-hhcccCCceEEEECCCcChHHHHHHHhhc
Confidence 46899999999999999999998775 145667753211111100 01100 0011 1235555455666676
Q ss_pred CCcEEEEecCCCCCC--CCChhHHHhhhHHHHHHHHHHHHhhc------CCC-cEEEEEeCChhhHH------HHHHHHC
Q 019990 81 DVNIAVMVGGFPRKE--GMERKDVMSKNVSIYKAQASALEKHA------APN-CKVLVVANPANTNA------LILKEFA 145 (332)
Q Consensus 81 ~aDiVi~~ag~~~~~--~~~~~~~~~~N~~~~~~i~~~i~~~~------~~~-~~viv~snp~~~~~------~~~~~~~ 145 (332)
++|+|||+||..... ........+.|+.++..+++++.++. .+. .+++.+|+.. +.. ..+.+.
T Consensus 74 ~~D~Vih~A~~~~~~~~~~~~~~~~~~N~~gt~~ll~a~~~~~~~~~~~~~~~~~~i~~SS~~-vyg~~~~~~~~~~E~- 151 (355)
T PRK10217 74 QPDCVMHLAAESHVDRSIDGPAAFIETNIVGTYTLLEAARAYWNALTEDKKSAFRFHHISTDE-VYGDLHSTDDFFTET- 151 (355)
T ss_pred CCCEEEECCcccCcchhhhChHHHHHHhhHHHHHHHHHHHHhhhcccccccCceEEEEecchh-hcCCCCCCCCCcCCC-
Confidence 489999999864321 11234577889999999999998741 012 2556666532 100 001111
Q ss_pred CCCCCCcEEEeecccHHHHHHHHHHHcCCCCCCeeeeEEEecCC
Q 019990 146 PSIPAKNITCLTRLDHNRAMGQISERLKVHVSDVKNVIIWGNHS 189 (332)
Q Consensus 146 ~~~~~~~i~~~t~l~~~r~~~~~a~~~~v~~~~v~~~~V~G~hg 189 (332)
....+...|+.+|...+++...+++.++++...+|..+|||++.
T Consensus 152 ~~~~p~s~Y~~sK~~~e~~~~~~~~~~~~~~~i~r~~~v~Gp~~ 195 (355)
T PRK10217 152 TPYAPSSPYSASKASSDHLVRAWLRTYGLPTLITNCSNNYGPYH 195 (355)
T ss_pred CCCCCCChhHHHHHHHHHHHHHHHHHhCCCeEEEeeeeeeCCCC
Confidence 12334557899999999999999999999999999999999864
|
|
| >COG0451 WcaG Nucleoside-diphosphate-sugar epimerases [Cell envelope biogenesis, outer membrane / Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.29 E-value=1.4e-11 Score=113.23 Aligned_cols=167 Identities=16% Similarity=0.105 Sum_probs=109.0
Q ss_pred EEEEEcCCChhHHHHHHHHHhcccCCCCCCeEEEEEecccchhhhhhhHhhhhhhccCCccceEEeCCHHHHhCCC-cEE
Q 019990 7 RVLVTGAAGQIGYALVPMIARGIMLGPDQPVILHMLDIEPAAEALNGVKMELIDAAFPLLKGVVATTDVVEACKDV-NIA 85 (332)
Q Consensus 7 kI~VtGaaG~IGs~l~~~L~~~~~~~~~~~~~i~l~D~~~~~~~~~~~~~dl~~~~~~~~~~v~~~~~~~~a~~~a-DiV 85 (332)
+|+||||+||||++|+..|++.|+ +|+.+|+.... .... . .... ....+++......+.++++ |.|
T Consensus 2 ~ILVtG~tGfiG~~l~~~L~~~g~-------~V~~~~r~~~~--~~~~--~-~~~~-~~~~d~~~~~~~~~~~~~~~d~v 68 (314)
T COG0451 2 RILVTGGAGFIGSHLVERLLAAGH-------DVRGLDRLRDG--LDPL--L-SGVE-FVVLDLTDRDLVDELAKGVPDAV 68 (314)
T ss_pred eEEEEcCcccHHHHHHHHHHhCCC-------eEEEEeCCCcc--cccc--c-cccc-eeeecccchHHHHHHHhcCCCEE
Confidence 499999999999999999999876 89999975421 1100 0 0110 0112333333344556777 999
Q ss_pred EEecCCCCCCCCC---hhHHHhhhHHHHHHHHHHHHhhcCCCcEEEEEeCChhhHH-H----HHHHHCCCCCCCcEEEee
Q 019990 86 VMVGGFPRKEGME---RKDVMSKNVSIYKAQASALEKHAAPNCKVLVVANPANTNA-L----ILKEFAPSIPAKNITCLT 157 (332)
Q Consensus 86 i~~ag~~~~~~~~---~~~~~~~N~~~~~~i~~~i~~~~~~~~~viv~snp~~~~~-~----~~~~~~~~~~~~~i~~~t 157 (332)
||+|+....+... ..++...|+.+++++++++++.+ -.++++.|+ ..... . .+.+......|...|+.+
T Consensus 69 ih~aa~~~~~~~~~~~~~~~~~~nv~gt~~ll~aa~~~~--~~~~v~~ss-~~~~~~~~~~~~~~E~~~~~~p~~~Yg~s 145 (314)
T COG0451 69 IHLAAQSSVPDSNASDPAEFLDVNVDGTLNLLEAARAAG--VKRFVFASS-VSVVYGDPPPLPIDEDLGPPRPLNPYGVS 145 (314)
T ss_pred EEccccCchhhhhhhCHHHHHHHHHHHHHHHHHHHHHcC--CCeEEEeCC-CceECCCCCCCCcccccCCCCCCCHHHHH
Confidence 9999875443322 13478899999999999999843 225555343 21110 0 111110011122258999
Q ss_pred cccHHHHHHHHHHHcCCCCCCeeeeEEEecCC
Q 019990 158 RLDHNRAMGQISERLKVHVSDVKNVIIWGNHS 189 (332)
Q Consensus 158 ~l~~~r~~~~~a~~~~v~~~~v~~~~V~G~hg 189 (332)
|+..++....+++..+++...+|...|||+..
T Consensus 146 K~~~E~~~~~~~~~~~~~~~ilR~~~vyGp~~ 177 (314)
T COG0451 146 KLAAEQLLRAYARLYGLPVVILRPFNVYGPGD 177 (314)
T ss_pred HHHHHHHHHHHHHHhCCCeEEEeeeeeeCCCC
Confidence 99999999999888999999999989999864
|
|
| >TIGR01472 gmd GDP-mannose 4,6-dehydratase | Back alignment and domain information |
|---|
Probab=99.28 E-value=1.1e-11 Score=116.09 Aligned_cols=174 Identities=9% Similarity=-0.034 Sum_probs=109.5
Q ss_pred cEEEEEcCCChhHHHHHHHHHhcccCCCCCCeEEEEEecccch---hhhhhhHhhhh---hhcc-CCccceEEeCCHHHH
Q 019990 6 LRVLVTGAAGQIGYALVPMIARGIMLGPDQPVILHMLDIEPAA---EALNGVKMELI---DAAF-PLLKGVVATTDVVEA 78 (332)
Q Consensus 6 ~kI~VtGaaG~IGs~l~~~L~~~~~~~~~~~~~i~l~D~~~~~---~~~~~~~~dl~---~~~~-~~~~~v~~~~~~~~a 78 (332)
++|+||||+||||++++..|++.|. +|+++|+.... +.+.....+.. .... ....|++....+.++
T Consensus 1 ~~vlVTGatGfIG~~l~~~L~~~G~-------~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~l~~~ 73 (343)
T TIGR01472 1 KIALITGITGQDGSYLAEFLLEKGY-------EVHGLIRRSSSFNTQRIEHIYEDPHNVNKARMKLHYGDLTDSSNLRRI 73 (343)
T ss_pred CeEEEEcCCCcHHHHHHHHHHHCCC-------EEEEEecCCcccchhhhhhhhhccccccccceeEEEeccCCHHHHHHH
Confidence 4899999999999999999999876 89999875321 11111000000 0001 112455544456666
Q ss_pred hCC--CcEEEEecCCCCCCC--CChhHHHhhhHHHHHHHHHHHHhhcCCC-cEEEEEeCChhhHHH----HHHHHCCCCC
Q 019990 79 CKD--VNIAVMVGGFPRKEG--MERKDVMSKNVSIYKAQASALEKHAAPN-CKVLVVANPANTNAL----ILKEFAPSIP 149 (332)
Q Consensus 79 ~~~--aDiVi~~ag~~~~~~--~~~~~~~~~N~~~~~~i~~~i~~~~~~~-~~viv~snp~~~~~~----~~~~~~~~~~ 149 (332)
+++ +|+|||+|+...... ......+..|+.++.++++++.+++... .+++++|+. .+-.. ...+ ...+.
T Consensus 74 ~~~~~~d~ViH~Aa~~~~~~~~~~~~~~~~~n~~gt~~ll~a~~~~~~~~~~~~v~~SS~-~vyg~~~~~~~~E-~~~~~ 151 (343)
T TIGR01472 74 IDEIKPTEIYNLAAQSHVKVSFEIPEYTADVDGIGTLRLLEAVRTLGLIKSVKFYQASTS-ELYGKVQEIPQNE-TTPFY 151 (343)
T ss_pred HHhCCCCEEEECCcccccchhhhChHHHHHHHHHHHHHHHHHHHHhCCCcCeeEEEeccH-HhhCCCCCCCCCC-CCCCC
Confidence 764 699999998643211 1123345678889999999999865222 356666642 11000 0111 12344
Q ss_pred CCcEEEeecccHHHHHHHHHHHcCCCCCCeeeeEEEecC
Q 019990 150 AKNITCLTRLDHNRAMGQISERLKVHVSDVKNVIIWGNH 188 (332)
Q Consensus 150 ~~~i~~~t~l~~~r~~~~~a~~~~v~~~~v~~~~V~G~h 188 (332)
|...|+.+|...+++...+++.++++....+.++++|++
T Consensus 152 p~~~Y~~sK~~~e~~~~~~~~~~~~~~~~~~~~~~~gp~ 190 (343)
T TIGR01472 152 PRSPYAAAKLYAHWITVNYREAYGLFAVNGILFNHESPR 190 (343)
T ss_pred CCChhHHHHHHHHHHHHHHHHHhCCceEEEeecccCCCC
Confidence 566899999999999999999899877766777777764
|
Excluded from this model are members of the clade that score poorly because of highly dervied (phylogenetically long-branch) sequences, e.g. Aneurinibacillus thermoaerophilus Gmd, described as a bifunctional GDP-mannose 4,6-dehydratase/GDP-6-deoxy-D-lyxo-4-hexulose reductase (PUBMED:11096116). |
| >PLN02260 probable rhamnose biosynthetic enzyme | Back alignment and domain information |
|---|
Probab=99.27 E-value=9.9e-12 Score=126.44 Aligned_cols=188 Identities=13% Similarity=0.104 Sum_probs=115.8
Q ss_pred CCcEEEEEcCCChhHHHHHHHHHhcccCCCCCCeEEEEEecccchhhhhhhHhhhhhhcc-CCccceEEeCCHHHHh--C
Q 019990 4 NPLRVLVTGAAGQIGYALVPMIARGIMLGPDQPVILHMLDIEPAAEALNGVKMELIDAAF-PLLKGVVATTDVVEAC--K 80 (332)
Q Consensus 4 ~~~kI~VtGaaG~IGs~l~~~L~~~~~~~~~~~~~i~l~D~~~~~~~~~~~~~dl~~~~~-~~~~~v~~~~~~~~a~--~ 80 (332)
+++||+||||+||||++++..|++.+. + .+|+.+|.................... ....|+.....+...+ .
T Consensus 5 ~~~~VLVTGatGfIG~~lv~~Ll~~g~-~----~~V~~~d~~~~~~~~~~l~~~~~~~~v~~~~~Dl~d~~~~~~~~~~~ 79 (668)
T PLN02260 5 EPKNILITGAAGFIASHVANRLIRNYP-D----YKIVVLDKLDYCSNLKNLNPSKSSPNFKFVKGDIASADLVNYLLITE 79 (668)
T ss_pred CCCEEEEECCCcHHHHHHHHHHHHhCC-C----CEEEEEeCCCccchhhhhhhcccCCCeEEEECCCCChHHHHHHHhhc
Confidence 578999999999999999999988632 1 278888863211111100000000000 1123443332333333 5
Q ss_pred CCcEEEEecCCCCCCC--CChhHHHhhhHHHHHHHHHHHHhhcCCCcEEEEEeCChhhHHHH-------HHHHCCCCCCC
Q 019990 81 DVNIAVMVGGFPRKEG--MERKDVMSKNVSIYKAQASALEKHAAPNCKVLVVANPANTNALI-------LKEFAPSIPAK 151 (332)
Q Consensus 81 ~aDiVi~~ag~~~~~~--~~~~~~~~~N~~~~~~i~~~i~~~~~~~~~viv~snp~~~~~~~-------~~~~~~~~~~~ 151 (332)
++|+|||+|+...... ....++...|+..+..+++++++.+ .-.++|.+|+. .+.... ..+ .....|.
T Consensus 80 ~~D~ViHlAa~~~~~~~~~~~~~~~~~Nv~gt~~ll~a~~~~~-~vkr~I~~SS~-~vyg~~~~~~~~~~~E-~~~~~p~ 156 (668)
T PLN02260 80 GIDTIMHFAAQTHVDNSFGNSFEFTKNNIYGTHVLLEACKVTG-QIRRFIHVSTD-EVYGETDEDADVGNHE-ASQLLPT 156 (668)
T ss_pred CCCEEEECCCccCchhhhhCHHHHHHHHHHHHHHHHHHHHhcC-CCcEEEEEcch-HHhCCCccccccCccc-cCCCCCC
Confidence 8999999998743211 1234567889999999999999874 22366766652 110000 001 1123344
Q ss_pred cEEEeecccHHHHHHHHHHHcCCCCCCeeeeEEEecCC--CceeecccCc
Q 019990 152 NITCLTRLDHNRAMGQISERLKVHVSDVKNVIIWGNHS--STQYPDVNHA 199 (332)
Q Consensus 152 ~i~~~t~l~~~r~~~~~a~~~~v~~~~v~~~~V~G~hg--~~~v~~~s~~ 199 (332)
..|+.+|...+++...+++.++++...+|.++|||++. ...+|.|...
T Consensus 157 ~~Y~~sK~~aE~~v~~~~~~~~l~~vilR~~~VyGp~~~~~~~i~~~~~~ 206 (668)
T PLN02260 157 NPYSATKAGAEMLVMAYGRSYGLPVITTRGNNVYGPNQFPEKLIPKFILL 206 (668)
T ss_pred CCcHHHHHHHHHHHHHHHHHcCCCEEEECcccccCcCCCcccHHHHHHHH
Confidence 57899999999999888888999999999999999864 3445555333
|
|
| >PRK10084 dTDP-glucose 4,6 dehydratase; Provisional | Back alignment and domain information |
|---|
Probab=99.24 E-value=2.5e-11 Score=113.93 Aligned_cols=175 Identities=11% Similarity=0.072 Sum_probs=110.7
Q ss_pred cEEEEEcCCChhHHHHHHHHHhcccCCCCCCeEEEEEecccchhhhhhhHhhhhh-hcc-CCccceEEeCCHHHHhC--C
Q 019990 6 LRVLVTGAAGQIGYALVPMIARGIMLGPDQPVILHMLDIEPAAEALNGVKMELID-AAF-PLLKGVVATTDVVEACK--D 81 (332)
Q Consensus 6 ~kI~VtGaaG~IGs~l~~~L~~~~~~~~~~~~~i~l~D~~~~~~~~~~~~~dl~~-~~~-~~~~~v~~~~~~~~a~~--~ 81 (332)
|||+||||+||||++++..|++.+. ..+..+|......... ....+.. ... ....|+....++.++++ +
T Consensus 1 mkilITGgtG~iG~~l~~~L~~~g~------~~v~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~ 73 (352)
T PRK10084 1 MKILVTGGAGFIGSAVVRHIINNTQ------DSVVNVDKLTYAGNLE-SLADVSDSERYVFEHADICDRAELDRIFAQHQ 73 (352)
T ss_pred CeEEEECCCcHHhHHHHHHHHHhCC------CeEEEecCCCccchHH-HHHhcccCCceEEEEecCCCHHHHHHHHHhcC
Confidence 4899999999999999999998764 1455566532100111 0011110 001 11235554455566665 4
Q ss_pred CcEEEEecCCCCC--CCCChhHHHhhhHHHHHHHHHHHHhhc------CCC-cEEEEEeCChhhHH--------------
Q 019990 82 VNIAVMVGGFPRK--EGMERKDVMSKNVSIYKAQASALEKHA------APN-CKVLVVANPANTNA-------------- 138 (332)
Q Consensus 82 aDiVi~~ag~~~~--~~~~~~~~~~~N~~~~~~i~~~i~~~~------~~~-~~viv~snp~~~~~-------------- 138 (332)
+|+|||+|+.... ......++++.|+.++..++++++++. ... .+++.+|... +..
T Consensus 74 ~d~vih~A~~~~~~~~~~~~~~~~~~N~~gt~~ll~~~~~~~~~~~~~~~~~~~~i~~SS~~-vyg~~~~~~~~~~~~~~ 152 (352)
T PRK10084 74 PDAVMHLAAESHVDRSITGPAAFIETNIVGTYVLLEAARNYWSALDEDKKNAFRFHHISTDE-VYGDLPHPDEVENSEEL 152 (352)
T ss_pred CCEEEECCcccCCcchhcCchhhhhhhhHHHHHHHHHHHHhccccccccccceeEEEecchh-hcCCCCccccccccccC
Confidence 8999999986432 112235678999999999999998751 011 2566666431 110
Q ss_pred HHHHHHCCCCCCCcEEEeecccHHHHHHHHHHHcCCCCCCeeeeEEEecCC
Q 019990 139 LILKEFAPSIPAKNITCLTRLDHNRAMGQISERLKVHVSDVKNVIIWGNHS 189 (332)
Q Consensus 139 ~~~~~~~~~~~~~~i~~~t~l~~~r~~~~~a~~~~v~~~~v~~~~V~G~hg 189 (332)
+.+.+. ..+.|...|+.+|...+++...+++.++++...+|...|||++.
T Consensus 153 ~~~~E~-~~~~p~~~Y~~sK~~~E~~~~~~~~~~g~~~vilr~~~v~Gp~~ 202 (352)
T PRK10084 153 PLFTET-TAYAPSSPYSASKASSDHLVRAWLRTYGLPTIVTNCSNNYGPYH 202 (352)
T ss_pred CCcccc-CCCCCCChhHHHHHHHHHHHHHHHHHhCCCEEEEeccceeCCCc
Confidence 001111 22345568999999999999888999999999999999999863
|
|
| >PRK11150 rfaD ADP-L-glycero-D-mannoheptose-6-epimerase; Provisional | Back alignment and domain information |
|---|
Probab=99.23 E-value=4.5e-11 Score=110.09 Aligned_cols=164 Identities=16% Similarity=0.203 Sum_probs=103.2
Q ss_pred EEEEcCCChhHHHHHHHHHhcccCCCCCCeEEEEEecccchhhhhhhHhhhhhhccCCccceEEeCCH-HHHh-----CC
Q 019990 8 VLVTGAAGQIGYALVPMIARGIMLGPDQPVILHMLDIEPAAEALNGVKMELIDAAFPLLKGVVATTDV-VEAC-----KD 81 (332)
Q Consensus 8 I~VtGaaG~IGs~l~~~L~~~~~~~~~~~~~i~l~D~~~~~~~~~~~~~dl~~~~~~~~~~v~~~~~~-~~a~-----~~ 81 (332)
|+||||+||||++|+..|++.|. ..+.++|........ ..+.... ..+.....++ .+++ .+
T Consensus 2 ilVtGa~GfiG~~l~~~L~~~g~------~~v~~~~~~~~~~~~----~~~~~~~---~~d~~~~~~~~~~~~~~~~~~~ 68 (308)
T PRK11150 2 IIVTGGAGFIGSNIVKALNDKGI------TDILVVDNLKDGTKF----VNLVDLD---IADYMDKEDFLAQIMAGDDFGD 68 (308)
T ss_pred EEEecCCcHHHHHHHHHHHhCCC------ceEEEecCCCcchHH----Hhhhhhh---hhhhhhHHHHHHHHhcccccCC
Confidence 89999999999999999998775 146677764311000 0111110 0111111122 2222 26
Q ss_pred CcEEEEecCCCCCCCCChhHHHhhhHHHHHHHHHHHHhhcCCCcEEEEEeCChhhHH----HHHHHHCCCCCCCcEEEee
Q 019990 82 VNIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEKHAAPNCKVLVVANPANTNA----LILKEFAPSIPAKNITCLT 157 (332)
Q Consensus 82 aDiVi~~ag~~~~~~~~~~~~~~~N~~~~~~i~~~i~~~~~~~~~viv~snp~~~~~----~~~~~~~~~~~~~~i~~~t 157 (332)
+|+|||+|+............++.|+..+.++++++++.+ .++|+.|+.. +.. ....+. ....|...|+.+
T Consensus 69 ~d~Vih~A~~~~~~~~~~~~~~~~n~~~t~~ll~~~~~~~---~~~i~~SS~~-vyg~~~~~~~~E~-~~~~p~~~Y~~s 143 (308)
T PRK11150 69 IEAIFHEGACSSTTEWDGKYMMDNNYQYSKELLHYCLERE---IPFLYASSAA-TYGGRTDDFIEER-EYEKPLNVYGYS 143 (308)
T ss_pred ccEEEECceecCCcCCChHHHHHHHHHHHHHHHHHHHHcC---CcEEEEcchH-HhCcCCCCCCccC-CCCCCCCHHHHH
Confidence 8999999985432222334567889999999999998864 3666666531 100 001111 112344468899
Q ss_pred cccHHHHHHHHHHHcCCCCCCeeeeEEEecCC
Q 019990 158 RLDHNRAMGQISERLKVHVSDVKNVIIWGNHS 189 (332)
Q Consensus 158 ~l~~~r~~~~~a~~~~v~~~~v~~~~V~G~hg 189 (332)
|...+++...+++..+++...+|.+.|||++.
T Consensus 144 K~~~E~~~~~~~~~~~~~~~~lR~~~vyG~~~ 175 (308)
T PRK11150 144 KFLFDEYVRQILPEANSQICGFRYFNVYGPRE 175 (308)
T ss_pred HHHHHHHHHHHHHHcCCCEEEEeeeeecCCCC
Confidence 99989888888888899999999999999754
|
|
| >KOG1430 consensus C-3 sterol dehydrogenase/3-beta-hydroxysteroid dehydrogenase and related dehydrogenases [Lipid transport and metabolism; Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.22 E-value=2.6e-11 Score=112.12 Aligned_cols=183 Identities=17% Similarity=0.181 Sum_probs=117.4
Q ss_pred CCCcEEEEEcCCChhHHHHHHHHHhcccCCCCCCeEEEEEecccchhhhhhhHhhhhhhccCC-ccceEEeCCHHHHhCC
Q 019990 3 KNPLRVLVTGAAGQIGYALVPMIARGIMLGPDQPVILHMLDIEPAAEALNGVKMELIDAAFPL-LKGVVATTDVVEACKD 81 (332)
Q Consensus 3 ~~~~kI~VtGaaG~IGs~l~~~L~~~~~~~~~~~~~i~l~D~~~~~~~~~~~~~dl~~~~~~~-~~~v~~~~~~~~a~~~ 81 (332)
.++.+++||||+||+|.||+..|++.+.. .+|+++|.............++....... ..++.....+..++++
T Consensus 2 ~~~~~vlVtGG~GflG~hlv~~L~~~~~~-----~~irv~D~~~~~~~~~~e~~~~~~~~v~~~~~D~~~~~~i~~a~~~ 76 (361)
T KOG1430|consen 2 EKKLSVLVTGGSGFLGQHLVQALLENELK-----LEIRVVDKTPTQSNLPAELTGFRSGRVTVILGDLLDANSISNAFQG 76 (361)
T ss_pred CcCCEEEEECCccHHHHHHHHHHHhcccc-----cEEEEeccCccccccchhhhcccCCceeEEecchhhhhhhhhhccC
Confidence 46678999999999999999999987632 39999998653112221111110111111 2566666678888999
Q ss_pred CcEEEEecCCCCC-CCC-ChhHHHhhhHHHHHHHHHHHHhhcCCCcEEEEEeCChhh---HHH-HHHHHCCCCCCC--cE
Q 019990 82 VNIAVMVGGFPRK-EGM-ERKDVMSKNVSIYKAQASALEKHAAPNCKVLVVANPANT---NAL-ILKEFAPSIPAK--NI 153 (332)
Q Consensus 82 aDiVi~~ag~~~~-~~~-~~~~~~~~N~~~~~~i~~~i~~~~~~~~~viv~snp~~~---~~~-~~~~~~~~~~~~--~i 153 (332)
+ .|+|+|..+.. ... .++...+.|+.++++++++|.+.+ ++.+|+++...+ ..+ +.....-.+|.. ..
T Consensus 77 ~-~Vvh~aa~~~~~~~~~~~~~~~~vNV~gT~nvi~~c~~~~---v~~lIYtSs~~Vvf~g~~~~n~~E~~p~p~~~~d~ 152 (361)
T KOG1430|consen 77 A-VVVHCAASPVPDFVENDRDLAMRVNVNGTLNVIEACKELG---VKRLIYTSSAYVVFGGEPIINGDESLPYPLKHIDP 152 (361)
T ss_pred c-eEEEeccccCccccccchhhheeecchhHHHHHHHHHHhC---CCEEEEecCceEEeCCeecccCCCCCCCccccccc
Confidence 9 77777654322 122 355677889999999999999986 333444433221 111 111211235533 27
Q ss_pred EEeecccHHHHHHHHHHHcCCCCCCeeeeEEEecCCCceee
Q 019990 154 TCLTRLDHNRAMGQISERLKVHVSDVKNVIIWGNHSSTQYP 194 (332)
Q Consensus 154 ~~~t~l~~~r~~~~~a~~~~v~~~~v~~~~V~G~hg~~~v~ 194 (332)
|+.|+...+++....+..-++....+|...|||+.....+|
T Consensus 153 Y~~sKa~aE~~Vl~an~~~~l~T~aLR~~~IYGpgd~~~~~ 193 (361)
T KOG1430|consen 153 YGESKALAEKLVLEANGSDDLYTCALRPPGIYGPGDKRLLP 193 (361)
T ss_pred cchHHHHHHHHHHHhcCCCCeeEEEEccccccCCCCccccH
Confidence 89999988888766555556788899999999985455454
|
|
| >PLN02583 cinnamoyl-CoA reductase | Back alignment and domain information |
|---|
Probab=99.21 E-value=5e-11 Score=109.43 Aligned_cols=176 Identities=13% Similarity=0.046 Sum_probs=111.7
Q ss_pred CCcEEEEEcCCChhHHHHHHHHHhcccCCCCCCeEEEEEecccchhhhhhhHhhhhhh--cc-CCccceEEeCCHHHHhC
Q 019990 4 NPLRVLVTGAAGQIGYALVPMIARGIMLGPDQPVILHMLDIEPAAEALNGVKMELIDA--AF-PLLKGVVATTDVVEACK 80 (332)
Q Consensus 4 ~~~kI~VtGaaG~IGs~l~~~L~~~~~~~~~~~~~i~l~D~~~~~~~~~~~~~dl~~~--~~-~~~~~v~~~~~~~~a~~ 80 (332)
..++|+||||+||||++++..|++.|+ +|++++++...........++... .. ....|++...++.+++.
T Consensus 5 ~~k~vlVTGatG~IG~~lv~~Ll~~G~-------~V~~~~R~~~~~~~~~~~~~l~~~~~~~~~~~~Dl~d~~~~~~~l~ 77 (297)
T PLN02583 5 SSKSVCVMDASGYVGFWLVKRLLSRGY-------TVHAAVQKNGETEIEKEIRGLSCEEERLKVFDVDPLDYHSILDALK 77 (297)
T ss_pred CCCEEEEECCCCHHHHHHHHHHHhCCC-------EEEEEEcCchhhhHHHHHHhcccCCCceEEEEecCCCHHHHHHHHc
Confidence 356899999999999999999999886 788877632111111111112100 01 11245555556678899
Q ss_pred CCcEEEEecCCCCCCCCChhHHHhhhHHHHHHHHHHHHhhcCCCcEEEEEeCChhhH-H-H------HHHHHCCCCC---
Q 019990 81 DVNIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEKHAAPNCKVLVVANPANTN-A-L------ILKEFAPSIP--- 149 (332)
Q Consensus 81 ~aDiVi~~ag~~~~~~~~~~~~~~~N~~~~~~i~~~i~~~~~~~~~viv~snp~~~~-~-~------~~~~~~~~~~--- 149 (332)
++|.|+|+++.+........++++.|+.++.++++++.+.... .++|++|+..... . . .+.+ ..+.
T Consensus 78 ~~d~v~~~~~~~~~~~~~~~~~~~~nv~gt~~ll~aa~~~~~v-~riV~~SS~~a~~~~~~~~~~~~~~~E--~~~~~~~ 154 (297)
T PLN02583 78 GCSGLFCCFDPPSDYPSYDEKMVDVEVRAAHNVLEACAQTDTI-EKVVFTSSLTAVIWRDDNISTQKDVDE--RSWSDQN 154 (297)
T ss_pred CCCEEEEeCccCCcccccHHHHHHHHHHHHHHHHHHHHhcCCc-cEEEEecchHheecccccCCCCCCCCc--ccCCCHH
Confidence 9999999876543211123457889999999999999886311 3666666532110 0 0 0000 0010
Q ss_pred ----CCcEEEeecccHHHHHHHHHHHcCCCCCCeeeeEEEecCC
Q 019990 150 ----AKNITCLTRLDHNRAMGQISERLKVHVSDVKNVIIWGNHS 189 (332)
Q Consensus 150 ----~~~i~~~t~l~~~r~~~~~a~~~~v~~~~v~~~~V~G~hg 189 (332)
+...|+.+|...+++...+++..+++...+|+..|||+..
T Consensus 155 ~~~~~~~~Y~~sK~~aE~~~~~~~~~~gi~~v~lrp~~v~Gp~~ 198 (297)
T PLN02583 155 FCRKFKLWHALAKTLSEKTAWALAMDRGVNMVSINAGLLMGPSL 198 (297)
T ss_pred HHhhcccHHHHHHHHHHHHHHHHHHHhCCcEEEEcCCcccCCCC
Confidence 0114778899999998888888899999999999999753
|
|
| >PLN02686 cinnamoyl-CoA reductase | Back alignment and domain information |
|---|
Probab=99.19 E-value=5.4e-11 Score=112.47 Aligned_cols=174 Identities=13% Similarity=0.108 Sum_probs=110.6
Q ss_pred CCcEEEEEcCCChhHHHHHHHHHhcccCCCCCCeEEEEEecccchhhhhhhHhhhhh--------hcc-CCccceEEeCC
Q 019990 4 NPLRVLVTGAAGQIGYALVPMIARGIMLGPDQPVILHMLDIEPAAEALNGVKMELID--------AAF-PLLKGVVATTD 74 (332)
Q Consensus 4 ~~~kI~VtGaaG~IGs~l~~~L~~~~~~~~~~~~~i~l~D~~~~~~~~~~~~~dl~~--------~~~-~~~~~v~~~~~ 74 (332)
++++|+||||+||||++++..|++.|+ +|+++..+. +..... .++.. ... ....|++...+
T Consensus 52 ~~k~VLVTGatGfIG~~lv~~L~~~G~-------~V~~~~r~~--~~~~~l-~~l~~~~~~~~~~~~~~~v~~Dl~d~~~ 121 (367)
T PLN02686 52 EARLVCVTGGVSFLGLAIVDRLLRHGY-------SVRIAVDTQ--EDKEKL-REMEMFGEMGRSNDGIWTVMANLTEPES 121 (367)
T ss_pred CCCEEEEECCchHHHHHHHHHHHHCCC-------EEEEEeCCH--HHHHHH-HHHhhhccccccCCceEEEEcCCCCHHH
Confidence 467899999999999999999999886 777654432 111111 11110 001 11245555555
Q ss_pred HHHHhCCCcEEEEecCCCCCCCC--ChhHHHhhhHHHHHHHHHHHHhhcCCCcEEEEEeCCh-hhHH--------HHHHH
Q 019990 75 VVEACKDVNIAVMVGGFPRKEGM--ERKDVMSKNVSIYKAQASALEKHAAPNCKVLVVANPA-NTNA--------LILKE 143 (332)
Q Consensus 75 ~~~a~~~aDiVi~~ag~~~~~~~--~~~~~~~~N~~~~~~i~~~i~~~~~~~~~viv~snp~-~~~~--------~~~~~ 143 (332)
+.++++++|.|||+|+.....+. ....+...|+..+.++++++++..... ++|++|+.. .... ..+.+
T Consensus 122 l~~~i~~~d~V~hlA~~~~~~~~~~~~~~~~~~nv~gt~~llea~~~~~~v~-r~V~~SS~~~~vyg~~~~~~~~~~i~E 200 (367)
T PLN02686 122 LHEAFDGCAGVFHTSAFVDPAGLSGYTKSMAELEAKASENVIEACVRTESVR-KCVFTSSLLACVWRQNYPHDLPPVIDE 200 (367)
T ss_pred HHHHHHhccEEEecCeeecccccccccchhhhhhHHHHHHHHHHHHhcCCcc-EEEEeccHHHhcccccCCCCCCcccCC
Confidence 67778899999999976432221 123456778999999999998752122 566666531 1000 00111
Q ss_pred HC-----CCCCCCcEEEeecccHHHHHHHHHHHcCCCCCCeeeeEEEecC
Q 019990 144 FA-----PSIPAKNITCLTRLDHNRAMGQISERLKVHVSDVKNVIIWGNH 188 (332)
Q Consensus 144 ~~-----~~~~~~~i~~~t~l~~~r~~~~~a~~~~v~~~~v~~~~V~G~h 188 (332)
.. ...++...|+.+|+..+++...+++..|++...+|..+|||+.
T Consensus 201 ~~~~~~~~~~~p~~~Y~~sK~~~E~~~~~~~~~~gl~~v~lRp~~vyGp~ 250 (367)
T PLN02686 201 ESWSDESFCRDNKLWYALGKLKAEKAAWRAARGKGLKLATICPALVTGPG 250 (367)
T ss_pred CCCCChhhcccccchHHHHHHHHHHHHHHHHHhcCceEEEEcCCceECCC
Confidence 00 0011223578899999999988889899999999999999984
|
|
| >KOG1371 consensus UDP-glucose 4-epimerase/UDP-sulfoquinovose synthase [Cell wall/membrane/envelope biogenesis] | Back alignment and domain information |
|---|
Probab=99.15 E-value=8.8e-11 Score=105.35 Aligned_cols=174 Identities=13% Similarity=0.117 Sum_probs=114.4
Q ss_pred CcEEEEEcCCChhHHHHHHHHHhcccCCCCCCeEEEEEecccchhhhhh--hHhhhhh--hc-cCCccceEEeCCHHHHh
Q 019990 5 PLRVLVTGAAGQIGYALVPMIARGIMLGPDQPVILHMLDIEPAAEALNG--VKMELID--AA-FPLLKGVVATTDVVEAC 79 (332)
Q Consensus 5 ~~kI~VtGaaG~IGs~l~~~L~~~~~~~~~~~~~i~l~D~~~~~~~~~~--~~~dl~~--~~-~~~~~~v~~~~~~~~a~ 79 (332)
.++|+||||+||||||.+.+|+..|+ +++.+|+..+. .+.. ....+.+ .. +....|+.+...+.+.+
T Consensus 2 ~~~VLVtGgaGyiGsht~l~L~~~gy-------~v~~vDNl~n~-~~~sl~r~~~l~~~~~~v~f~~~Dl~D~~~L~kvF 73 (343)
T KOG1371|consen 2 GKHVLVTGGAGYIGSHTVLALLKRGY-------GVVIVDNLNNS-YLESLKRVRQLLGEGKSVFFVEGDLNDAEALEKLF 73 (343)
T ss_pred CcEEEEecCCcceehHHHHHHHhCCC-------cEEEEeccccc-chhHHHHHHHhcCCCCceEEEEeccCCHHHHHHHH
Confidence 46899999999999999999999987 89999975421 1111 1111211 00 11224555545555555
Q ss_pred C--CCcEEEEecCCCCCC--CCChhHHHhhhHHHHHHHHHHHHhhcCCCcEEEEEeCCh---hhHHHHHHHHCCCCCCCc
Q 019990 80 K--DVNIAVMVGGFPRKE--GMERKDVMSKNVSIYKAQASALEKHAAPNCKVLVVANPA---NTNALILKEFAPSIPAKN 152 (332)
Q Consensus 80 ~--~aDiVi~~ag~~~~~--~~~~~~~~~~N~~~~~~i~~~i~~~~~~~~~viv~snp~---~~~~~~~~~~~~~~~~~~ 152 (332)
+ ..|-|+|.|+..... -..+..+...|+-++.++++.|+++. .. .++..|+.. +.+.-.+.+..+...|..
T Consensus 74 ~~~~fd~V~Hfa~~~~vgeS~~~p~~Y~~nNi~gtlnlLe~~~~~~-~~-~~V~sssatvYG~p~~ip~te~~~t~~p~~ 151 (343)
T KOG1371|consen 74 SEVKFDAVMHFAALAAVGESMENPLSYYHNNIAGTLNLLEVMKAHN-VK-ALVFSSSATVYGLPTKVPITEEDPTDQPTN 151 (343)
T ss_pred hhcCCceEEeehhhhccchhhhCchhheehhhhhHHHHHHHHHHcC-Cc-eEEEecceeeecCcceeeccCcCCCCCCCC
Confidence 4 579999998764321 12335678889999999999999985 22 334444221 111111223222223666
Q ss_pred EEEeecccHHHHHHHHHHHcCCCCCCeeeeEEEecC
Q 019990 153 ITCLTRLDHNRAMGQISERLKVHVSDVKNVIIWGNH 188 (332)
Q Consensus 153 i~~~t~l~~~r~~~~~a~~~~v~~~~v~~~~V~G~h 188 (332)
.++-|+...+.+..-+...++.....+|.|+++|.|
T Consensus 152 pyg~tK~~iE~i~~d~~~~~~~~~~~LRyfn~~ga~ 187 (343)
T KOG1371|consen 152 PYGKTKKAIEEIIHDYNKAYGWKVTGLRYFNVIGAH 187 (343)
T ss_pred cchhhhHHHHHHHHhhhccccceEEEEEeccccCcc
Confidence 889999999999999999999999999999999954
|
|
| >TIGR01181 dTDP_gluc_dehyt dTDP-glucose 4,6-dehydratase | Back alignment and domain information |
|---|
Probab=99.14 E-value=2.9e-10 Score=104.55 Aligned_cols=174 Identities=14% Similarity=0.078 Sum_probs=110.9
Q ss_pred EEEEEcCCChhHHHHHHHHHhcccCCCCCCeEEEEEecccchhhhhhhHhhhhhh-cc-CCccceEEeCCHHHHhCC--C
Q 019990 7 RVLVTGAAGQIGYALVPMIARGIMLGPDQPVILHMLDIEPAAEALNGVKMELIDA-AF-PLLKGVVATTDVVEACKD--V 82 (332)
Q Consensus 7 kI~VtGaaG~IGs~l~~~L~~~~~~~~~~~~~i~l~D~~~~~~~~~~~~~dl~~~-~~-~~~~~v~~~~~~~~a~~~--a 82 (332)
+|+||||+|+||++++..|++.+. ..+|.++|........ ....++... .. ....|+....++.+++++ +
T Consensus 1 ~ilItGatG~iG~~l~~~l~~~~~-----~~~v~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~ 74 (317)
T TIGR01181 1 RILVTGGAGFIGSNFVRYILNEHP-----DAEVIVLDKLTYAGNL-ENLADLEDNPRYRFVKGDIGDRELVSRLFTEHQP 74 (317)
T ss_pred CEEEEcCCchHHHHHHHHHHHhCC-----CCEEEEecCCCcchhh-hhhhhhccCCCcEEEEcCCcCHHHHHHHHhhcCC
Confidence 589999999999999999987652 0278888753210000 011111110 01 112355555566677776 8
Q ss_pred cEEEEecCCCCC--CCCChhHHHhhhHHHHHHHHHHHHhhcCCCcEEEEEeCChh-----hHHHHHHHHCCCCCCCcEEE
Q 019990 83 NIAVMVGGFPRK--EGMERKDVMSKNVSIYKAQASALEKHAAPNCKVLVVANPAN-----TNALILKEFAPSIPAKNITC 155 (332)
Q Consensus 83 DiVi~~ag~~~~--~~~~~~~~~~~N~~~~~~i~~~i~~~~~~~~~viv~snp~~-----~~~~~~~~~~~~~~~~~i~~ 155 (332)
|+|||+|+.... .......++..|+..+..+++++.+.. .+.+++.+|+..- ...+ ..+. ....+...|+
T Consensus 75 d~vi~~a~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~-~~~~~i~~Ss~~v~g~~~~~~~-~~e~-~~~~~~~~Y~ 151 (317)
T TIGR01181 75 DAVVHFAAESHVDRSISGPAAFIETNVVGTYTLLEAVRKYW-HEFRFHHISTDEVYGDLEKGDA-FTET-TPLAPSSPYS 151 (317)
T ss_pred CEEEEcccccCchhhhhCHHHHHHHHHHHHHHHHHHHHhcC-CCceEEEeeccceeCCCCCCCC-cCCC-CCCCCCCchH
Confidence 999999986421 112234567889999999999998864 3446666664210 0001 1111 2233445788
Q ss_pred eecccHHHHHHHHHHHcCCCCCCeeeeEEEecCC
Q 019990 156 LTRLDHNRAMGQISERLKVHVSDVKNVIIWGNHS 189 (332)
Q Consensus 156 ~t~l~~~r~~~~~a~~~~v~~~~v~~~~V~G~hg 189 (332)
.++...+++...+++..+++...+|...+||+..
T Consensus 152 ~sK~~~e~~~~~~~~~~~~~~~i~R~~~i~G~~~ 185 (317)
T TIGR01181 152 ASKAASDHLVRAYHRTYGLPALITRCSNNYGPYQ 185 (317)
T ss_pred HHHHHHHHHHHHHHHHhCCCeEEEEeccccCCCC
Confidence 8999999998888889999999999999999753
|
This protein is related to UDP-glucose 4-epimerase (GalE) and likewise has an NAD cofactor. |
| >PLN02240 UDP-glucose 4-epimerase | Back alignment and domain information |
|---|
Probab=99.13 E-value=2.1e-10 Score=107.55 Aligned_cols=177 Identities=15% Similarity=0.053 Sum_probs=109.4
Q ss_pred CCCCCcEEEEEcCCChhHHHHHHHHHhcccCCCCCCeEEEEEecccchh-hhhhhHhhhhh---hcc-CCccceEEeCCH
Q 019990 1 MAKNPLRVLVTGAAGQIGYALVPMIARGIMLGPDQPVILHMLDIEPAAE-ALNGVKMELID---AAF-PLLKGVVATTDV 75 (332)
Q Consensus 1 m~~~~~kI~VtGaaG~IGs~l~~~L~~~~~~~~~~~~~i~l~D~~~~~~-~~~~~~~dl~~---~~~-~~~~~v~~~~~~ 75 (332)
|+..++||+||||+||+|++++..|++.+. +|+++|+..... .......+... ... ....|+....++
T Consensus 1 ~~~~~~~vlItGatG~iG~~l~~~L~~~g~-------~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~l 73 (352)
T PLN02240 1 MSLMGRTILVTGGAGYIGSHTVLQLLLAGY-------KVVVIDNLDNSSEEALRRVKELAGDLGDNLVFHKVDLRDKEAL 73 (352)
T ss_pred CCCCCCEEEEECCCChHHHHHHHHHHHCCC-------EEEEEeCCCcchHHHHHHHHHhhcccCccceEEecCcCCHHHH
Confidence 667778999999999999999999998775 788888632110 00001111110 001 112345444445
Q ss_pred HHHhC--CCcEEEEecCCCCCC--CCChhHHHhhhHHHHHHHHHHHHhhcCCCcEEEEEeCChhhHHH----HHHHHCCC
Q 019990 76 VEACK--DVNIAVMVGGFPRKE--GMERKDVMSKNVSIYKAQASALEKHAAPNCKVLVVANPANTNAL----ILKEFAPS 147 (332)
Q Consensus 76 ~~a~~--~aDiVi~~ag~~~~~--~~~~~~~~~~N~~~~~~i~~~i~~~~~~~~~viv~snp~~~~~~----~~~~~~~~ 147 (332)
.++++ ++|+|||+|+..... .......+..|+.....+++++++.+ . .+++++|+ ...... .+.+ ...
T Consensus 74 ~~~~~~~~~d~vih~a~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~-~-~~~v~~Ss-~~vyg~~~~~~~~E-~~~ 149 (352)
T PLN02240 74 EKVFASTRFDAVIHFAGLKAVGESVAKPLLYYDNNLVGTINLLEVMAKHG-C-KKLVFSSS-ATVYGQPEEVPCTE-EFP 149 (352)
T ss_pred HHHHHhCCCCEEEEccccCCccccccCHHHHHHHHHHHHHHHHHHHHHcC-C-CEEEEEcc-HHHhCCCCCCCCCC-CCC
Confidence 55554 689999999864211 12234567889999999999998764 2 25666664 221100 0111 122
Q ss_pred CCCCcEEEeecccHHHHHHHHHHH-cCCCCCCeeeeEEEecC
Q 019990 148 IPAKNITCLTRLDHNRAMGQISER-LKVHVSDVKNVIIWGNH 188 (332)
Q Consensus 148 ~~~~~i~~~t~l~~~r~~~~~a~~-~~v~~~~v~~~~V~G~h 188 (332)
+++...|+.++...+++...+++. .++....+|.++|||.|
T Consensus 150 ~~~~~~Y~~sK~~~e~~~~~~~~~~~~~~~~~~R~~~v~G~~ 191 (352)
T PLN02240 150 LSATNPYGRTKLFIEEICRDIHASDPEWKIILLRYFNPVGAH 191 (352)
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHhcCCCCEEEEeecCcCCCC
Confidence 334446788888888887777654 57777788988888865
|
|
| >PLN02653 GDP-mannose 4,6-dehydratase | Back alignment and domain information |
|---|
Probab=99.11 E-value=3.6e-10 Score=105.65 Aligned_cols=176 Identities=9% Similarity=-0.012 Sum_probs=108.5
Q ss_pred CCcEEEEEcCCChhHHHHHHHHHhcccCCCCCCeEEEEEecccch---hhhhhhHhhhhh--hcc-CCccceEEeCCHHH
Q 019990 4 NPLRVLVTGAAGQIGYALVPMIARGIMLGPDQPVILHMLDIEPAA---EALNGVKMELID--AAF-PLLKGVVATTDVVE 77 (332)
Q Consensus 4 ~~~kI~VtGaaG~IGs~l~~~L~~~~~~~~~~~~~i~l~D~~~~~---~~~~~~~~dl~~--~~~-~~~~~v~~~~~~~~ 77 (332)
++++|+||||+||||++++..|++.|. +|+++++.... +.+.....+... ... ....|+....++.+
T Consensus 5 ~~~~vlVTGatGfiG~~l~~~L~~~G~-------~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~ 77 (340)
T PLN02653 5 PRKVALITGITGQDGSYLTEFLLSKGY-------EVHGIIRRSSNFNTQRLDHIYIDPHPNKARMKLHYGDLSDASSLRR 77 (340)
T ss_pred CCCEEEEECCCCccHHHHHHHHHHCCC-------EEEEEecccccccccchhhhccccccccCceEEEEecCCCHHHHHH
Confidence 457899999999999999999999886 88888865321 011111000000 001 11234544444555
Q ss_pred HhCC--CcEEEEecCCCCCCC--CChhHHHhhhHHHHHHHHHHHHhhcCCC---cEEEEEeCChhhHHH---HHHHHCCC
Q 019990 78 ACKD--VNIAVMVGGFPRKEG--MERKDVMSKNVSIYKAQASALEKHAAPN---CKVLVVANPANTNAL---ILKEFAPS 147 (332)
Q Consensus 78 a~~~--aDiVi~~ag~~~~~~--~~~~~~~~~N~~~~~~i~~~i~~~~~~~---~~viv~snp~~~~~~---~~~~~~~~ 147 (332)
++++ .|+|||+|+...... ......+..|+.++.++++++.+++.+. .++|++|+ ..+... ...+ ...
T Consensus 78 ~~~~~~~d~Vih~A~~~~~~~~~~~~~~~~~~N~~gt~~ll~~~~~~~~~~~~~~~~v~~Ss-~~vyg~~~~~~~E-~~~ 155 (340)
T PLN02653 78 WLDDIKPDEVYNLAAQSHVAVSFEMPDYTADVVATGALRLLEAVRLHGQETGRQIKYYQAGS-SEMYGSTPPPQSE-TTP 155 (340)
T ss_pred HHHHcCCCEEEECCcccchhhhhhChhHHHHHHHHHHHHHHHHHHHhccccccceeEEEecc-HHHhCCCCCCCCC-CCC
Confidence 5654 699999998743211 1223356789999999999999875221 25555553 211100 0011 122
Q ss_pred CCCCcEEEeecccHHHHHHHHHHHcCCCCCCeeeeEEEecC
Q 019990 148 IPAKNITCLTRLDHNRAMGQISERLKVHVSDVKNVIIWGNH 188 (332)
Q Consensus 148 ~~~~~i~~~t~l~~~r~~~~~a~~~~v~~~~v~~~~V~G~h 188 (332)
+.|...|+.+|...+++...+++.+++.....+.++++|++
T Consensus 156 ~~p~~~Y~~sK~~~e~~~~~~~~~~~~~~~~~~~~~~~gp~ 196 (340)
T PLN02653 156 FHPRSPYAVAKVAAHWYTVNYREAYGLFACNGILFNHESPR 196 (340)
T ss_pred CCCCChhHHHHHHHHHHHHHHHHHcCCeEEEeeeccccCCC
Confidence 34455799999999999888999888876666667777764
|
|
| >PF01370 Epimerase: NAD dependent epimerase/dehydratase family; InterPro: IPR001509 This family of proteins utilise NAD as a cofactor | Back alignment and domain information |
|---|
Probab=99.09 E-value=3.1e-11 Score=106.36 Aligned_cols=166 Identities=13% Similarity=0.181 Sum_probs=107.4
Q ss_pred EEEEcCCChhHHHHHHHHHhcccCCCCCCeEEEEEecccchhhhhhhHhhhhhhccCCccceEEeCCHHHHhCCC--cEE
Q 019990 8 VLVTGAAGQIGYALVPMIARGIMLGPDQPVILHMLDIEPAAEALNGVKMELIDAAFPLLKGVVATTDVVEACKDV--NIA 85 (332)
Q Consensus 8 I~VtGaaG~IGs~l~~~L~~~~~~~~~~~~~i~l~D~~~~~~~~~~~~~dl~~~~~~~~~~v~~~~~~~~a~~~a--DiV 85 (332)
|+||||+||||++++..|++.+. +++.+......+ ... ....... ....++.....+.+.+++. |.|
T Consensus 1 IlI~GatG~iG~~l~~~l~~~g~-------~v~~~~~~~~~~-~~~--~~~~~~~-~~~~dl~~~~~~~~~~~~~~~d~v 69 (236)
T PF01370_consen 1 ILITGATGFIGSALVRQLLKKGH-------EVIVLSRSSNSE-SFE--EKKLNVE-FVIGDLTDKEQLEKLLEKANIDVV 69 (236)
T ss_dssp EEEETTTSHHHHHHHHHHHHTTT-------EEEEEESCSTGG-HHH--HHHTTEE-EEESETTSHHHHHHHHHHHTESEE
T ss_pred EEEEccCCHHHHHHHHHHHHcCC-------cccccccccccc-ccc--cccceEE-EEEeeccccccccccccccCceEE
Confidence 79999999999999999999886 555444433211 111 1000100 0112333334555666665 999
Q ss_pred EEecCCCCC--CCCChhHHHhhhHHHHHHHHHHHHhhcCCCcEEEEEeCChhhHHHH----HHHHCCCCCCCcEEEeecc
Q 019990 86 VMVGGFPRK--EGMERKDVMSKNVSIYKAQASALEKHAAPNCKVLVVANPANTNALI----LKEFAPSIPAKNITCLTRL 159 (332)
Q Consensus 86 i~~ag~~~~--~~~~~~~~~~~N~~~~~~i~~~i~~~~~~~~~viv~snp~~~~~~~----~~~~~~~~~~~~i~~~t~l 159 (332)
||+|+.... ......+....|+...+++++++++.+ . .++++.|+ ....... +.+. +.+.+...|+.++.
T Consensus 70 i~~a~~~~~~~~~~~~~~~~~~n~~~~~~ll~~~~~~~-~-~~~i~~sS-~~~y~~~~~~~~~e~-~~~~~~~~Y~~~K~ 145 (236)
T PF01370_consen 70 IHLAAFSSNPESFEDPEEIIEANVQGTRNLLEAAREAG-V-KRFIFLSS-ASVYGDPDGEPIDED-SPINPLSPYGASKR 145 (236)
T ss_dssp EEEBSSSSHHHHHHSHHHHHHHHHHHHHHHHHHHHHHT-T-SEEEEEEE-GGGGTSSSSSSBETT-SGCCHSSHHHHHHH
T ss_pred EEeecccccccccccccccccccccccccccccccccc-c-cccccccc-ccccccccccccccc-cccccccccccccc
Confidence 999987521 112345677889999999999999986 3 36676665 2211000 0000 11223335788899
Q ss_pred cHHHHHHHHHHHcCCCCCCeeeeEEEecC
Q 019990 160 DHNRAMGQISERLKVHVSDVKNVIIWGNH 188 (332)
Q Consensus 160 ~~~r~~~~~a~~~~v~~~~v~~~~V~G~h 188 (332)
..+++...++++.+++...+|...|||++
T Consensus 146 ~~e~~~~~~~~~~~~~~~~~R~~~vyG~~ 174 (236)
T PF01370_consen 146 AAEELLRDYAKKYGLRVTILRPPNVYGPG 174 (236)
T ss_dssp HHHHHHHHHHHHHTSEEEEEEESEEESTT
T ss_pred ccccccccccccccccccccccccccccc
Confidence 99999999999999999999999999987
|
The proteins in this family use nucleotide-sugar substrates for a variety of chemical reactions []. It contains the NAD(P)- binding domain (IPR016040 from INTERPRO) which is a commonly found domain with a core Rossmann-type fold. One of the best studied of these proteins is UDP-galactose 4-epimerase which catalyses the conversion of UDP-galactose to UDP-glucose during galactose metabolism [, ].; GO: 0003824 catalytic activity, 0050662 coenzyme binding, 0044237 cellular metabolic process; PDB: 2NNL_D 3C1T_B 3BXX_C 2IOD_C 2X4G_A 2Q1W_B 3SLG_B 1R66_A 1R6D_A 1KEU_B .... |
| >PRK10675 UDP-galactose-4-epimerase; Provisional | Back alignment and domain information |
|---|
Probab=99.08 E-value=6.8e-10 Score=103.52 Aligned_cols=172 Identities=14% Similarity=0.070 Sum_probs=105.3
Q ss_pred cEEEEEcCCChhHHHHHHHHHhcccCCCCCCeEEEEEecccch-hhhhhhHhhhhhhcc-CCccceEEeCCHHHHhC--C
Q 019990 6 LRVLVTGAAGQIGYALVPMIARGIMLGPDQPVILHMLDIEPAA-EALNGVKMELIDAAF-PLLKGVVATTDVVEACK--D 81 (332)
Q Consensus 6 ~kI~VtGaaG~IGs~l~~~L~~~~~~~~~~~~~i~l~D~~~~~-~~~~~~~~dl~~~~~-~~~~~v~~~~~~~~a~~--~ 81 (332)
|||+||||+||||++++..|++.+. +|+++++.... ........++.+... ....|+.....+.++++ +
T Consensus 1 m~vlVtGatG~iG~~l~~~L~~~g~-------~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~ 73 (338)
T PRK10675 1 MRVLVTGGSGYIGSHTCVQLLQNGH-------DVVILDNLCNSKRSVLPVIERLGGKHPTFVEGDIRNEALLTEILHDHA 73 (338)
T ss_pred CeEEEECCCChHHHHHHHHHHHCCC-------eEEEEecCCCchHhHHHHHHHhcCCCceEEEccCCCHHHHHHHHhcCC
Confidence 4799999999999999999998875 78888753211 000000111111101 01234443334445554 6
Q ss_pred CcEEEEecCCCCCC--CCChhHHHhhhHHHHHHHHHHHHhhcCCCcEEEEEeCChhhHHH----HHHHHCCCC-CCCcEE
Q 019990 82 VNIAVMVGGFPRKE--GMERKDVMSKNVSIYKAQASALEKHAAPNCKVLVVANPANTNAL----ILKEFAPSI-PAKNIT 154 (332)
Q Consensus 82 aDiVi~~ag~~~~~--~~~~~~~~~~N~~~~~~i~~~i~~~~~~~~~viv~snp~~~~~~----~~~~~~~~~-~~~~i~ 154 (332)
+|+|||+|+..... .....+.+..|+..+..+++++++.+ . .++|++|+ ...... .+.+. ... .|...|
T Consensus 74 ~d~vvh~a~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~-~-~~~v~~Ss-~~~yg~~~~~~~~E~-~~~~~p~~~Y 149 (338)
T PRK10675 74 IDTVIHFAGLKAVGESVQKPLEYYDNNVNGTLRLISAMRAAN-V-KNLIFSSS-ATVYGDQPKIPYVES-FPTGTPQSPY 149 (338)
T ss_pred CCEEEECCccccccchhhCHHHHHHHHHHHHHHHHHHHHHcC-C-CEEEEecc-HHhhCCCCCCccccc-cCCCCCCChh
Confidence 89999999864321 12234577889999999999998864 2 25666554 221100 01110 111 233467
Q ss_pred EeecccHHHHHHHHHHH-cCCCCCCeeeeEEEecC
Q 019990 155 CLTRLDHNRAMGQISER-LKVHVSDVKNVIIWGNH 188 (332)
Q Consensus 155 ~~t~l~~~r~~~~~a~~-~~v~~~~v~~~~V~G~h 188 (332)
+.++...+++...+++. .+++...+|.++|||+|
T Consensus 150 ~~sK~~~E~~~~~~~~~~~~~~~~ilR~~~v~g~~ 184 (338)
T PRK10675 150 GKSKLMVEQILTDLQKAQPDWSIALLRYFNPVGAH 184 (338)
T ss_pred HHHHHHHHHHHHHHHHhcCCCcEEEEEeeeecCCC
Confidence 88899888888877765 47888889988899976
|
|
| >TIGR03466 HpnA hopanoid-associated sugar epimerase | Back alignment and domain information |
|---|
Probab=99.07 E-value=3.1e-10 Score=105.07 Aligned_cols=168 Identities=15% Similarity=0.079 Sum_probs=109.9
Q ss_pred cEEEEEcCCChhHHHHHHHHHhcccCCCCCCeEEEEEecccchhhhhhhHhhhhhhcc-CCccceEEeCCHHHHhCCCcE
Q 019990 6 LRVLVTGAAGQIGYALVPMIARGIMLGPDQPVILHMLDIEPAAEALNGVKMELIDAAF-PLLKGVVATTDVVEACKDVNI 84 (332)
Q Consensus 6 ~kI~VtGaaG~IGs~l~~~L~~~~~~~~~~~~~i~l~D~~~~~~~~~~~~~dl~~~~~-~~~~~v~~~~~~~~a~~~aDi 84 (332)
|||+||||+||+|++++..|++.+. +|++++++.. ... ++.+... ....|+....++.++++++|+
T Consensus 1 ~~vlItG~~G~iG~~l~~~L~~~g~-------~V~~~~r~~~--~~~----~~~~~~~~~~~~D~~~~~~l~~~~~~~d~ 67 (328)
T TIGR03466 1 MKVLVTGATGFVGSAVVRLLLEQGE-------EVRVLVRPTS--DRR----NLEGLDVEIVEGDLRDPASLRKAVAGCRA 67 (328)
T ss_pred CeEEEECCccchhHHHHHHHHHCCC-------EEEEEEecCc--ccc----ccccCCceEEEeeCCCHHHHHHHHhCCCE
Confidence 4799999999999999999998875 8999987532 111 1111101 112344444456677889999
Q ss_pred EEEecCCCCCCCCChhHHHhhhHHHHHHHHHHHHhhcCCCcEEEEEeCChhhHH----HHHHHHCCCCCCC---cEEEee
Q 019990 85 AVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEKHAAPNCKVLVVANPANTNA----LILKEFAPSIPAK---NITCLT 157 (332)
Q Consensus 85 Vi~~ag~~~~~~~~~~~~~~~N~~~~~~i~~~i~~~~~~~~~viv~snp~~~~~----~~~~~~~~~~~~~---~i~~~t 157 (332)
|||+|+.......+..+.++.|+..+..+++++.+.+ . .++|++|+....-. ....+. ....+. ..|+.+
T Consensus 68 vi~~a~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~-~-~~~v~~SS~~~~~~~~~~~~~~e~-~~~~~~~~~~~Y~~s 144 (328)
T TIGR03466 68 LFHVAADYRLWAPDPEEMYAANVEGTRNLLRAALEAG-V-ERVVYTSSVATLGVRGDGTPADET-TPSSLDDMIGHYKRS 144 (328)
T ss_pred EEEeceecccCCCCHHHHHHHHHHHHHHHHHHHHHhC-C-CeEEEEechhhcCcCCCCCCcCcc-CCCCcccccChHHHH
Confidence 9999875322223345677889999999999998864 2 25666665311000 000110 111121 246677
Q ss_pred cccHHHHHHHHHHHcCCCCCCeeeeEEEecCC
Q 019990 158 RLDHNRAMGQISERLKVHVSDVKNVIIWGNHS 189 (332)
Q Consensus 158 ~l~~~r~~~~~a~~~~v~~~~v~~~~V~G~hg 189 (332)
+...+++...+++..+++...+|...+||++.
T Consensus 145 K~~~e~~~~~~~~~~~~~~~ilR~~~~~G~~~ 176 (328)
T TIGR03466 145 KFLAEQAALEMAAEKGLPVVIVNPSTPIGPRD 176 (328)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEeCCccCCCCC
Confidence 88888888888888899999999999999753
|
The sequences in this family are members of the pfam01370 superfamily of NAD-dependent epimerases and dehydratases typically acting on nucleotide-sugar substrates. The genes of the family modeled here are generally in the same locus with genes involved in the biosynthesis and elaboration of hopene, the cyclization product of the polyisoprenoid squalene. |
| >PLN02778 3,5-epimerase/4-reductase | Back alignment and domain information |
|---|
Probab=99.02 E-value=1.7e-09 Score=99.43 Aligned_cols=138 Identities=12% Similarity=0.020 Sum_probs=85.7
Q ss_pred CcEEEEEcCCChhHHHHHHHHHhcccCCCCCCeEEEEEecccchhhhhhhHhhhhhhccCCccceEEeCCHHHHh--CCC
Q 019990 5 PLRVLVTGAAGQIGYALVPMIARGIMLGPDQPVILHMLDIEPAAEALNGVKMELIDAAFPLLKGVVATTDVVEAC--KDV 82 (332)
Q Consensus 5 ~~kI~VtGaaG~IGs~l~~~L~~~~~~~~~~~~~i~l~D~~~~~~~~~~~~~dl~~~~~~~~~~v~~~~~~~~a~--~~a 82 (332)
.|||+||||+||||++|+..|++.|+ +++....+. . |.. .+...+ .++
T Consensus 9 ~~kiLVtG~tGfiG~~l~~~L~~~g~-------~V~~~~~~~-----~----~~~--------------~v~~~l~~~~~ 58 (298)
T PLN02778 9 TLKFLIYGKTGWIGGLLGKLCQEQGI-------DFHYGSGRL-----E----NRA--------------SLEADIDAVKP 58 (298)
T ss_pred CCeEEEECCCCHHHHHHHHHHHhCCC-------EEEEecCcc-----C----CHH--------------HHHHHHHhcCC
Confidence 47999999999999999999998875 665432210 0 000 011112 268
Q ss_pred cEEEEecCCCCCCC-----CChhHHHhhhHHHHHHHHHHHHhhcCCCcEEEEEe-CChhh-HH--H-----HHHHHCCCC
Q 019990 83 NIAVMVGGFPRKEG-----MERKDVMSKNVSIYKAQASALEKHAAPNCKVLVVA-NPANT-NA--L-----ILKEFAPSI 148 (332)
Q Consensus 83 DiVi~~ag~~~~~~-----~~~~~~~~~N~~~~~~i~~~i~~~~~~~~~viv~s-np~~~-~~--~-----~~~~~~~~~ 148 (332)
|+|||+|+....+. ....+.+..|+.++.++++++++++ . +++++| ..+-. .. + .+.+.....
T Consensus 59 D~ViH~Aa~~~~~~~~~~~~~p~~~~~~Nv~gt~~ll~aa~~~g-v--~~v~~sS~~vy~~~~~~p~~~~~~~~Ee~~p~ 135 (298)
T PLN02778 59 THVFNAAGVTGRPNVDWCESHKVETIRANVVGTLTLADVCRERG-L--VLTNYATGCIFEYDDAHPLGSGIGFKEEDTPN 135 (298)
T ss_pred CEEEECCcccCCCCchhhhhCHHHHHHHHHHHHHHHHHHHHHhC-C--CEEEEecceEeCCCCCCCcccCCCCCcCCCCC
Confidence 99999998643211 2335678899999999999999875 2 334443 22200 00 0 011111222
Q ss_pred CCCcEEEeecccHHHHHHHHHHHcCCC
Q 019990 149 PAKNITCLTRLDHNRAMGQISERLKVH 175 (332)
Q Consensus 149 ~~~~i~~~t~l~~~r~~~~~a~~~~v~ 175 (332)
++...|+.+|+..+++...+++.+++.
T Consensus 136 ~~~s~Yg~sK~~~E~~~~~y~~~~~lr 162 (298)
T PLN02778 136 FTGSFYSKTKAMVEELLKNYENVCTLR 162 (298)
T ss_pred CCCCchHHHHHHHHHHHHHhhccEEee
Confidence 334589999999999888777665544
|
|
| >PLN02725 GDP-4-keto-6-deoxymannose-3,5-epimerase-4-reductase | Back alignment and domain information |
|---|
Probab=98.93 E-value=3.1e-09 Score=97.50 Aligned_cols=152 Identities=14% Similarity=0.140 Sum_probs=97.6
Q ss_pred EEEcCCChhHHHHHHHHHhcccCCCCCCeEEEEEecccchhhhhhhHhhhhhhccCCccceEEeCCHHHHhC--CCcEEE
Q 019990 9 LVTGAAGQIGYALVPMIARGIMLGPDQPVILHMLDIEPAAEALNGVKMELIDAAFPLLKGVVATTDVVEACK--DVNIAV 86 (332)
Q Consensus 9 ~VtGaaG~IGs~l~~~L~~~~~~~~~~~~~i~l~D~~~~~~~~~~~~~dl~~~~~~~~~~v~~~~~~~~a~~--~aDiVi 86 (332)
+||||+||||++|+..|+..+. +++++.... . .|+ ....++.+.++ ++|+||
T Consensus 1 lItGa~GfiG~~l~~~L~~~g~-------~v~~~~~~~-----~---~Dl-----------~~~~~l~~~~~~~~~d~Vi 54 (306)
T PLN02725 1 FVAGHRGLVGSAIVRKLEALGF-------TNLVLRTHK-----E---LDL-----------TRQADVEAFFAKEKPTYVI 54 (306)
T ss_pred CcccCCCcccHHHHHHHHhCCC-------cEEEeeccc-----c---CCC-----------CCHHHHHHHHhccCCCEEE
Confidence 5899999999999999988764 444443211 1 122 22233444444 579999
Q ss_pred EecCCCCC---CCCChhHHHhhhHHHHHHHHHHHHhhcCCCcEEEEEeCC-h---hhHHHHHHHHC---CCCCCCc-EEE
Q 019990 87 MVGGFPRK---EGMERKDVMSKNVSIYKAQASALEKHAAPNCKVLVVANP-A---NTNALILKEFA---PSIPAKN-ITC 155 (332)
Q Consensus 87 ~~ag~~~~---~~~~~~~~~~~N~~~~~~i~~~i~~~~~~~~~viv~snp-~---~~~~~~~~~~~---~~~~~~~-i~~ 155 (332)
|+|+.... ......++++.|..++.++++++++.+ . .++|+.|+. + ....+ ..+.. ....|.. .|+
T Consensus 55 h~A~~~~~~~~~~~~~~~~~~~n~~~~~~ll~~~~~~~-~-~~~i~~SS~~vyg~~~~~~-~~E~~~~~~~~~p~~~~Y~ 131 (306)
T PLN02725 55 LAAAKVGGIHANMTYPADFIRENLQIQTNVIDAAYRHG-V-KKLLFLGSSCIYPKFAPQP-IPETALLTGPPEPTNEWYA 131 (306)
T ss_pred EeeeeecccchhhhCcHHHHHHHhHHHHHHHHHHHHcC-C-CeEEEeCceeecCCCCCCC-CCHHHhccCCCCCCcchHH
Confidence 99976321 112234577889999999999999874 2 256666542 1 00000 01100 0122222 488
Q ss_pred eecccHHHHHHHHHHHcCCCCCCeeeeEEEecCC
Q 019990 156 LTRLDHNRAMGQISERLKVHVSDVKNVIIWGNHS 189 (332)
Q Consensus 156 ~t~l~~~r~~~~~a~~~~v~~~~v~~~~V~G~hg 189 (332)
.+|...+++...+.+..+++...+|...|||++.
T Consensus 132 ~sK~~~e~~~~~~~~~~~~~~~~~R~~~vyG~~~ 165 (306)
T PLN02725 132 IAKIAGIKMCQAYRIQYGWDAISGMPTNLYGPHD 165 (306)
T ss_pred HHHHHHHHHHHHHHHHhCCCEEEEEecceeCCCC
Confidence 8899888888778888999999999999999853
|
|
| >PRK09135 pteridine reductase; Provisional | Back alignment and domain information |
|---|
Probab=98.93 E-value=6.1e-09 Score=92.43 Aligned_cols=153 Identities=12% Similarity=0.115 Sum_probs=92.8
Q ss_pred CCcEEEEEcCCChhHHHHHHHHHhcccCCCCCCeEEEEEecccchhhhhhhHhhhhhhc---c-CCccceEEeCCHHHHh
Q 019990 4 NPLRVLVTGAAGQIGYALVPMIARGIMLGPDQPVILHMLDIEPAAEALNGVKMELIDAA---F-PLLKGVVATTDVVEAC 79 (332)
Q Consensus 4 ~~~kI~VtGaaG~IGs~l~~~L~~~~~~~~~~~~~i~l~D~~~~~~~~~~~~~dl~~~~---~-~~~~~v~~~~~~~~a~ 79 (332)
+.++|+||||+|+||++++..|++.+. ++++++++.. +.......++.+.. . ....|++...++.+++
T Consensus 5 ~~~~vlItGa~g~iG~~l~~~l~~~g~-------~v~~~~r~~~-~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~ 76 (249)
T PRK09135 5 SAKVALITGGARRIGAAIARTLHAAGY-------RVAIHYHRSA-AEADALAAELNALRPGSAAALQADLLDPDALPELV 76 (249)
T ss_pred CCCEEEEeCCCchHHHHHHHHHHHCCC-------EEEEEcCCCH-HHHHHHHHHHHhhcCCceEEEEcCCCCHHHHHHHH
Confidence 457899999999999999999998875 8888887532 22222222232210 0 1123444333333333
Q ss_pred C-------CCcEEEEecCCCCC--CC-CC---hhHHHhhhHHHHHHHHHHHHhhcC-CCcEEEEEeCChhhHHHHHHHHC
Q 019990 80 K-------DVNIAVMVGGFPRK--EG-ME---RKDVMSKNVSIYKAQASALEKHAA-PNCKVLVVANPANTNALILKEFA 145 (332)
Q Consensus 80 ~-------~aDiVi~~ag~~~~--~~-~~---~~~~~~~N~~~~~~i~~~i~~~~~-~~~~viv~snp~~~~~~~~~~~~ 145 (332)
+ ..|+|||+||.... .. .+ ..+.++.|+.....+++++..+-. ....++..++ .. ..
T Consensus 77 ~~~~~~~~~~d~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~g~~~l~~~~~~~~~~~~~~~~~~~~-~~-------~~- 147 (249)
T PRK09135 77 AACVAAFGRLDALVNNASSFYPTPLGSITEAQWDDLFASNLKAPFFLSQAAAPQLRKQRGAIVNITD-IH-------AE- 147 (249)
T ss_pred HHHHHHcCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHhchhHHHHHHHHHHHHhhCCeEEEEEeC-hh-------hc-
Confidence 3 57999999986321 11 11 234677898888888888765421 1234443332 11 11
Q ss_pred CCCCCCcEEEeecccHHHHHHHHHHHcC
Q 019990 146 PSIPAKNITCLTRLDHNRAMGQISERLK 173 (332)
Q Consensus 146 ~~~~~~~i~~~t~l~~~r~~~~~a~~~~ 173 (332)
.+.++...|+.+|...+.+...+++.++
T Consensus 148 ~~~~~~~~Y~~sK~~~~~~~~~l~~~~~ 175 (249)
T PRK09135 148 RPLKGYPVYCAAKAALEMLTRSLALELA 175 (249)
T ss_pred CCCCCchhHHHHHHHHHHHHHHHHHHHC
Confidence 2345556789999988888888888764
|
|
| >TIGR02197 heptose_epim ADP-L-glycero-D-manno-heptose-6-epimerase | Back alignment and domain information |
|---|
Probab=98.92 E-value=4e-09 Score=97.12 Aligned_cols=166 Identities=13% Similarity=0.140 Sum_probs=99.1
Q ss_pred EEEEcCCChhHHHHHHHHHhcccCCCCCCeEEEEEecccchhhhhhhHhhhhhhccCCccceEEeCCHHHHh----CCCc
Q 019990 8 VLVTGAAGQIGYALVPMIARGIMLGPDQPVILHMLDIEPAAEALNGVKMELIDAAFPLLKGVVATTDVVEAC----KDVN 83 (332)
Q Consensus 8 I~VtGaaG~IGs~l~~~L~~~~~~~~~~~~~i~l~D~~~~~~~~~~~~~dl~~~~~~~~~~v~~~~~~~~a~----~~aD 83 (332)
|+||||+||||++++..|.+.+. .+|.++|.......+ ..+.. .....++.....+.... .++|
T Consensus 1 ilItGatG~iG~~l~~~L~~~g~------~~v~~~~~~~~~~~~----~~~~~--~~~~~d~~~~~~~~~~~~~~~~~~D 68 (314)
T TIGR02197 1 IIVTGGAGFIGSNLVKALNERGI------TDILVVDNLRDGHKF----LNLAD--LVIADYIDKEDFLDRLEKGAFGKIE 68 (314)
T ss_pred CEEeCCcchhhHHHHHHHHHcCC------ceEEEEecCCCchhh----hhhhh--eeeeccCcchhHHHHHHhhccCCCC
Confidence 68999999999999999998774 157777764321111 11111 01112232222232222 4799
Q ss_pred EEEEecCCCCCCCCChhHHHhhhHHHHHHHHHHHHhhcCCCcEEEEEeCChhhHH---HHHHHHCCCCCCCcEEEeeccc
Q 019990 84 IAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEKHAAPNCKVLVVANPANTNA---LILKEFAPSIPAKNITCLTRLD 160 (332)
Q Consensus 84 iVi~~ag~~~~~~~~~~~~~~~N~~~~~~i~~~i~~~~~~~~~viv~snp~~~~~---~~~~~~~~~~~~~~i~~~t~l~ 160 (332)
+|||+|+.......+....+..|+..+.++++++.+.+ .++|++|+. .+.. ....+..+...|...|+.++..
T Consensus 69 ~vvh~A~~~~~~~~~~~~~~~~n~~~~~~ll~~~~~~~---~~~v~~SS~-~vy~~~~~~~~e~~~~~~p~~~Y~~sK~~ 144 (314)
T TIGR02197 69 AIFHQGACSDTTETDGEYMMENNYQYSKRLLDWCAEKG---IPFIYASSA-ATYGDGEAGFREGRELERPLNVYGYSKFL 144 (314)
T ss_pred EEEECccccCccccchHHHHHHHHHHHHHHHHHHHHhC---CcEEEEccH-HhcCCCCCCcccccCcCCCCCHHHHHHHH
Confidence 99999986432222334567889999999999998874 356666652 1100 0001110111234467888887
Q ss_pred HHHHHHHHH-H-HcCCCCCCeeeeEEEecCC
Q 019990 161 HNRAMGQIS-E-RLKVHVSDVKNVIIWGNHS 189 (332)
Q Consensus 161 ~~r~~~~~a-~-~~~v~~~~v~~~~V~G~hg 189 (332)
.+++...+. + ..+++...+|...|||+..
T Consensus 145 ~e~~~~~~~~~~~~~~~~~~lR~~~vyG~~~ 175 (314)
T TIGR02197 145 FDQYVRRRVLPEALSAQVVGLRYFNVYGPRE 175 (314)
T ss_pred HHHHHHHHhHhhccCCceEEEEEeeccCCCC
Confidence 777765432 2 3467888899999999853
|
This family consists of examples of ADP-L-glycero-D-mannoheptose-6-epimerase, an enzyme involved in biosynthesis of the inner core of lipopolysaccharide (LPS) for Gram-negative bacteria. This enzyme is homologous to UDP-glucose 4-epimerase (TIGR01179) and belongs to the NAD dependent epimerase/dehydratase family (pfam01370). |
| >PRK06194 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=98.91 E-value=2e-08 Score=91.48 Aligned_cols=165 Identities=18% Similarity=0.116 Sum_probs=101.4
Q ss_pred CCcEEEEEcCCChhHHHHHHHHHhcccCCCCCCeEEEEEecccchhhhhhhHhhhhhhc--c-CCccceEEeCCHHHHhC
Q 019990 4 NPLRVLVTGAAGQIGYALVPMIARGIMLGPDQPVILHMLDIEPAAEALNGVKMELIDAA--F-PLLKGVVATTDVVEACK 80 (332)
Q Consensus 4 ~~~kI~VtGaaG~IGs~l~~~L~~~~~~~~~~~~~i~l~D~~~~~~~~~~~~~dl~~~~--~-~~~~~v~~~~~~~~a~~ 80 (332)
++++|+||||+|+||++++..|++.|. +|+++|++. +.+.....++.... . .+..|++...++.++++
T Consensus 5 ~~k~vlVtGasggIG~~la~~l~~~G~-------~V~~~~r~~--~~~~~~~~~~~~~~~~~~~~~~D~~d~~~~~~~~~ 75 (287)
T PRK06194 5 AGKVAVITGAASGFGLAFARIGAALGM-------KLVLADVQQ--DALDRAVAELRAQGAEVLGVRTDVSDAAQVEALAD 75 (287)
T ss_pred CCCEEEEeCCccHHHHHHHHHHHHCCC-------EEEEEeCCh--HHHHHHHHHHHhcCCeEEEEECCCCCHHHHHHHHH
Confidence 457899999999999999999998885 899999753 23333333332111 1 11234444444444433
Q ss_pred -------CCcEEEEecCCCCCC---CCChh---HHHhhhHHHHHHHHHH----HHhhcCC----CcEEEEEeCChhhHHH
Q 019990 81 -------DVNIAVMVGGFPRKE---GMERK---DVMSKNVSIYKAQASA----LEKHAAP----NCKVLVVANPANTNAL 139 (332)
Q Consensus 81 -------~aDiVi~~ag~~~~~---~~~~~---~~~~~N~~~~~~i~~~----i~~~~~~----~~~viv~snp~~~~~~ 139 (332)
..|+|||.||..... ..+.. ..++.|+.....+.++ +.+.+.+ ..+++++|+....
T Consensus 76 ~~~~~~g~id~vi~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~~~~~~~g~iv~~sS~~~~--- 152 (287)
T PRK06194 76 AALERFGAVHLLFNNAGVGAGGLVWENSLADWEWVLGVNLWGVIHGVRAFTPLMLAAAEKDPAYEGHIVNTASMAGL--- 152 (287)
T ss_pred HHHHHcCCCCEEEECCCCCCCCCcccCCHHHHHHHHhhccHHHHHHHHHHHHHHHhcCCCCCCCCeEEEEeCChhhc---
Confidence 479999999874321 12222 2466777666555444 4443311 1456666653221
Q ss_pred HHHHHCCCCCCCcEEEeecccHHHHHHHHHHHcCCCCCCeeeeEEEec
Q 019990 140 ILKEFAPSIPAKNITCLTRLDHNRAMGQISERLKVHVSDVKNVIIWGN 187 (332)
Q Consensus 140 ~~~~~~~~~~~~~i~~~t~l~~~r~~~~~a~~~~v~~~~v~~~~V~G~ 187 (332)
.+.+....|+.++.....+...+++.++.....+|..+ +.+
T Consensus 153 ------~~~~~~~~Y~~sK~a~~~~~~~l~~e~~~~~~~irv~~-v~p 193 (287)
T PRK06194 153 ------LAPPAMGIYNVSKHAVVSLTETLYQDLSLVTDQVGASV-LCP 193 (287)
T ss_pred ------cCCCCCcchHHHHHHHHHHHHHHHHHHhhcCCCeEEEE-EEe
Confidence 12233447889999889999999998888878888654 454
|
|
| >TIGR01214 rmlD dTDP-4-dehydrorhamnose reductase | Back alignment and domain information |
|---|
Probab=98.91 E-value=3.3e-09 Score=96.50 Aligned_cols=148 Identities=16% Similarity=0.232 Sum_probs=94.7
Q ss_pred EEEEEcCCChhHHHHHHHHHhcccCCCCCCeEEEEEecccchhhhhhhHhhhhhhccCCccceEEeCCHHHHhCCC--cE
Q 019990 7 RVLVTGAAGQIGYALVPMIARGIMLGPDQPVILHMLDIEPAAEALNGVKMELIDAAFPLLKGVVATTDVVEACKDV--NI 84 (332)
Q Consensus 7 kI~VtGaaG~IGs~l~~~L~~~~~~~~~~~~~i~l~D~~~~~~~~~~~~~dl~~~~~~~~~~v~~~~~~~~a~~~a--Di 84 (332)
||+||||+||||++++..|++.|+ +++.+++.. .|+. ...++.++++++ |+
T Consensus 1 kilv~G~tG~iG~~l~~~l~~~g~-------~v~~~~r~~---------~d~~-----------~~~~~~~~~~~~~~d~ 53 (287)
T TIGR01214 1 RILITGANGQLGRELVQQLSPEGR-------VVVALTSSQ---------LDLT-----------DPEALERLLRAIRPDA 53 (287)
T ss_pred CEEEEcCCCHHHHHHHHHHHhcCC-------EEEEeCCcc---------cCCC-----------CHHHHHHHHHhCCCCE
Confidence 689999999999999999998875 888887631 1221 123455556655 99
Q ss_pred EEEecCCCCCC--CCChhHHHhhhHHHHHHHHHHHHhhcCCCcEEEEEeCChh--h-HHHHHHHHCCCCCCCcEEEeecc
Q 019990 85 AVMVGGFPRKE--GMERKDVMSKNVSIYKAQASALEKHAAPNCKVLVVANPAN--T-NALILKEFAPSIPAKNITCLTRL 159 (332)
Q Consensus 85 Vi~~ag~~~~~--~~~~~~~~~~N~~~~~~i~~~i~~~~~~~~~viv~snp~~--~-~~~~~~~~~~~~~~~~i~~~t~l 159 (332)
|||+|+..... .......+..|+..+.++++++++.+ .++|++|+..- . ....+.+. ....+...|+.++.
T Consensus 54 vi~~a~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~---~~~v~~Ss~~vy~~~~~~~~~E~-~~~~~~~~Y~~~K~ 129 (287)
T TIGR01214 54 VVNTAAYTDVDGAESDPEKAFAVNALAPQNLARAAARHG---ARLVHISTDYVFDGEGKRPYRED-DATNPLNVYGQSKL 129 (287)
T ss_pred EEECCccccccccccCHHHHHHHHHHHHHHHHHHHHHcC---CeEEEEeeeeeecCCCCCCCCCC-CCCCCcchhhHHHH
Confidence 99999864321 12234567889999999999998764 26666664210 0 00000110 11223335666777
Q ss_pred cHHHHHHHHHHHcCCCCCCeeeeEEEecCC
Q 019990 160 DHNRAMGQISERLKVHVSDVKNVIIWGNHS 189 (332)
Q Consensus 160 ~~~r~~~~~a~~~~v~~~~v~~~~V~G~hg 189 (332)
..+++.. .++.+...+|...|||++.
T Consensus 130 ~~E~~~~----~~~~~~~ilR~~~v~G~~~ 155 (287)
T TIGR01214 130 AGEQAIR----AAGPNALIVRTSWLYGGGG 155 (287)
T ss_pred HHHHHHH----HhCCCeEEEEeeecccCCC
Confidence 6665443 3477888899988999864
|
This enzyme catalyzes the last of 4 steps in making dTDP-rhamnose, a precursor of LPS core antigen, O-antigen, etc. |
| >CHL00194 ycf39 Ycf39; Provisional | Back alignment and domain information |
|---|
Probab=98.90 E-value=1e-08 Score=94.92 Aligned_cols=109 Identities=12% Similarity=0.042 Sum_probs=75.1
Q ss_pred cEEEEEcCCChhHHHHHHHHHhcccCCCCCCeEEEEEecccchhhhhhhHhhhhhhcc-CCccceEEeCCHHHHhCCCcE
Q 019990 6 LRVLVTGAAGQIGYALVPMIARGIMLGPDQPVILHMLDIEPAAEALNGVKMELIDAAF-PLLKGVVATTDVVEACKDVNI 84 (332)
Q Consensus 6 ~kI~VtGaaG~IGs~l~~~L~~~~~~~~~~~~~i~l~D~~~~~~~~~~~~~dl~~~~~-~~~~~v~~~~~~~~a~~~aDi 84 (332)
|||+||||+||||++++..|++.|+ +|+.++++.. ... .+.+... ....|+....++.++++++|+
T Consensus 1 MkIlVtGatG~iG~~lv~~Ll~~g~-------~V~~l~R~~~--~~~----~l~~~~v~~v~~Dl~d~~~l~~al~g~d~ 67 (317)
T CHL00194 1 MSLLVIGATGTLGRQIVRQALDEGY-------QVRCLVRNLR--KAS----FLKEWGAELVYGDLSLPETLPPSFKGVTA 67 (317)
T ss_pred CEEEEECCCcHHHHHHHHHHHHCCC-------eEEEEEcChH--Hhh----hHhhcCCEEEECCCCCHHHHHHHHCCCCE
Confidence 4899999999999999999998886 8888887531 111 1111111 112455555667888999999
Q ss_pred EEEecCCCCCCCCChhHHHhhhHHHHHHHHHHHHhhcCCCcEEEEEeC
Q 019990 85 AVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEKHAAPNCKVLVVAN 132 (332)
Q Consensus 85 Vi~~ag~~~~~~~~~~~~~~~N~~~~~~i~~~i~~~~~~~~~viv~sn 132 (332)
|||+++.... ....+...|.....++++++++.+ .. ++|.+|.
T Consensus 68 Vi~~~~~~~~---~~~~~~~~~~~~~~~l~~aa~~~g-vk-r~I~~Ss 110 (317)
T CHL00194 68 IIDASTSRPS---DLYNAKQIDWDGKLALIEAAKAAK-IK-RFIFFSI 110 (317)
T ss_pred EEECCCCCCC---CccchhhhhHHHHHHHHHHHHHcC-CC-EEEEecc
Confidence 9998764321 123356678889999999999875 22 6666664
|
|
| >TIGR01777 yfcH conserved hypothetical protein TIGR01777 | Back alignment and domain information |
|---|
Probab=98.88 E-value=5.1e-09 Score=95.30 Aligned_cols=161 Identities=19% Similarity=0.205 Sum_probs=91.4
Q ss_pred EEEEcCCChhHHHHHHHHHhcccCCCCCCeEEEEEecccchhhhhhhHhhhhhhccCCccceEEeCCHHHHhCCCcEEEE
Q 019990 8 VLVTGAAGQIGYALVPMIARGIMLGPDQPVILHMLDIEPAAEALNGVKMELIDAAFPLLKGVVATTDVVEACKDVNIAVM 87 (332)
Q Consensus 8 I~VtGaaG~IGs~l~~~L~~~~~~~~~~~~~i~l~D~~~~~~~~~~~~~dl~~~~~~~~~~v~~~~~~~~a~~~aDiVi~ 87 (332)
|+||||+||||++++..|++.++ +|+.++++... ... +... ...++.. ....++++++|+|||
T Consensus 1 vlVtGatG~iG~~l~~~L~~~g~-------~V~~~~r~~~~--~~~----~~~~---~~~~~~~-~~~~~~~~~~D~Vvh 63 (292)
T TIGR01777 1 ILITGGTGFIGRALTQRLTKDGH-------EVTILTRSPPA--GAN----TKWE---GYKPWAP-LAESEALEGADAVIN 63 (292)
T ss_pred CEEEcccchhhHHHHHHHHHcCC-------EEEEEeCCCCC--CCc----ccce---eeecccc-cchhhhcCCCCEEEE
Confidence 68999999999999999998875 89999875421 111 0000 0011111 334567889999999
Q ss_pred ecCCCCCCC----CChhHHHhhhHHHHHHHHHHHHhhcCCCcEEEEEeCChhhHH----HHHHHHCCCCCCCcEEEeecc
Q 019990 88 VGGFPRKEG----MERKDVMSKNVSIYKAQASALEKHAAPNCKVLVVANPANTNA----LILKEFAPSIPAKNITCLTRL 159 (332)
Q Consensus 88 ~ag~~~~~~----~~~~~~~~~N~~~~~~i~~~i~~~~~~~~~viv~snp~~~~~----~~~~~~~~~~~~~~i~~~t~l 159 (332)
+|+.+...+ ....++.+.|+..++++++++++++ ....+++.++.+.... ..+.+. ....+..+++-...
T Consensus 64 ~a~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~a~~~~~-~~~~~~i~~S~~~~yg~~~~~~~~E~-~~~~~~~~~~~~~~ 141 (292)
T TIGR01777 64 LAGEPIADKRWTEERKQEIRDSRIDTTRALVEAIAAAE-QKPKVFISASAVGYYGTSEDRVFTEE-DSPAGDDFLAELCR 141 (292)
T ss_pred CCCCCcccccCCHHHHHHHHhcccHHHHHHHHHHHhcC-CCceEEEEeeeEEEeCCCCCCCcCcc-cCCCCCChHHHHHH
Confidence 998753221 1224567789999999999999875 2223343332211000 001110 10111112111122
Q ss_pred cHHHHHHHHHHHcCCCCCCeeeeEEEecC
Q 019990 160 DHNRAMGQISERLKVHVSDVKNVIIWGNH 188 (332)
Q Consensus 160 ~~~r~~~~~a~~~~v~~~~v~~~~V~G~h 188 (332)
..++.... ++..+++...+|...|||+.
T Consensus 142 ~~e~~~~~-~~~~~~~~~ilR~~~v~G~~ 169 (292)
T TIGR01777 142 DWEEAAQA-AEDLGTRVVLLRTGIVLGPK 169 (292)
T ss_pred HHHHHhhh-chhcCCceEEEeeeeEECCC
Confidence 22222222 23457889999999999974
|
This model represents a clade of proteins of unknown function including the E. coli yfcH protein. |
| >PRK05865 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=98.85 E-value=2.2e-08 Score=102.81 Aligned_cols=132 Identities=13% Similarity=0.140 Sum_probs=89.8
Q ss_pred cEEEEEcCCChhHHHHHHHHHhcccCCCCCCeEEEEEecccchhhhhhhHhhhhhhccCCccceEEeCCHHHHhCCCcEE
Q 019990 6 LRVLVTGAAGQIGYALVPMIARGIMLGPDQPVILHMLDIEPAAEALNGVKMELIDAAFPLLKGVVATTDVVEACKDVNIA 85 (332)
Q Consensus 6 ~kI~VtGaaG~IGs~l~~~L~~~~~~~~~~~~~i~l~D~~~~~~~~~~~~~dl~~~~~~~~~~v~~~~~~~~a~~~aDiV 85 (332)
|||+||||+||||++++..|++.|+ +|+.+++... +... ... .....|+....++.++++++|+|
T Consensus 1 MkILVTGATGfIGs~La~~Ll~~G~-------~Vv~l~R~~~-~~~~------~~v-~~v~gDL~D~~~l~~al~~vD~V 65 (854)
T PRK05865 1 MRIAVTGASGVLGRGLTARLLSQGH-------EVVGIARHRP-DSWP------SSA-DFIAADIRDATAVESAMTGADVV 65 (854)
T ss_pred CEEEEECCCCHHHHHHHHHHHHCcC-------EEEEEECCch-hhcc------cCc-eEEEeeCCCHHHHHHHHhCCCEE
Confidence 4799999999999999999998876 8888887431 1110 000 01123454445566778899999
Q ss_pred EEecCCCCCCCCChhHHHhhhHHHHHHHHHHHHhhcCCCcEEEEEeCChhhHHHHHHHHCCCCCCCcEEEeecccHHHHH
Q 019990 86 VMVGGFPRKEGMERKDVMSKNVSIYKAQASALEKHAAPNCKVLVVANPANTNALILKEFAPSIPAKNITCLTRLDHNRAM 165 (332)
Q Consensus 86 i~~ag~~~~~~~~~~~~~~~N~~~~~~i~~~i~~~~~~~~~viv~snp~~~~~~~~~~~~~~~~~~~i~~~t~l~~~r~~ 165 (332)
||+|+.... ....|+..+.++++++++.+ . .++|++|++. +...++
T Consensus 66 VHlAa~~~~-------~~~vNv~GT~nLLeAa~~~g-v-kr~V~iSS~~-----------------------K~aaE~-- 111 (854)
T PRK05865 66 AHCAWVRGR-------NDHINIDGTANVLKAMAETG-T-GRIVFTSSGH-----------------------QPRVEQ-- 111 (854)
T ss_pred EECCCcccc-------hHHHHHHHHHHHHHHHHHcC-C-CeEEEECCcH-----------------------HHHHHH--
Confidence 999975321 35778999999999999875 2 3677777642 111222
Q ss_pred HHHHHHcCCCCCCeeeeEEEecC
Q 019990 166 GQISERLKVHVSDVKNVIIWGNH 188 (332)
Q Consensus 166 ~~~a~~~~v~~~~v~~~~V~G~h 188 (332)
+.+.++++...+|.++|||++
T Consensus 112 --ll~~~gl~~vILRp~~VYGP~ 132 (854)
T PRK05865 112 --MLADCGLEWVAVRCALIFGRN 132 (854)
T ss_pred --HHHHcCCCEEEEEeceEeCCC
Confidence 223468888888888888874
|
|
| >PRK07201 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=98.83 E-value=1.2e-08 Score=103.80 Aligned_cols=169 Identities=14% Similarity=0.146 Sum_probs=99.1
Q ss_pred cEEEEEcCCChhHHHHHHHHHh--cccCCCCCCeEEEEEecccchhhhhhhHhhhhhhcc-CCccceEEe-----CCHHH
Q 019990 6 LRVLVTGAAGQIGYALVPMIAR--GIMLGPDQPVILHMLDIEPAAEALNGVKMELIDAAF-PLLKGVVAT-----TDVVE 77 (332)
Q Consensus 6 ~kI~VtGaaG~IGs~l~~~L~~--~~~~~~~~~~~i~l~D~~~~~~~~~~~~~dl~~~~~-~~~~~v~~~-----~~~~~ 77 (332)
|||+||||+||||++++..|++ .+. +|++++++.....+......+.+... ....|+... ....+
T Consensus 1 m~ILVTGatGfIG~~lv~~Ll~~~~g~-------~V~~l~R~~~~~~~~~~~~~~~~~~v~~~~~Dl~~~~~~~~~~~~~ 73 (657)
T PRK07201 1 MRYFVTGGTGFIGRRLVSRLLDRRREA-------TVHVLVRRQSLSRLEALAAYWGADRVVPLVGDLTEPGLGLSEADIA 73 (657)
T ss_pred CeEEEeCCccHHHHHHHHHHHhcCCCC-------EEEEEECcchHHHHHHHHHhcCCCcEEEEecccCCccCCcCHHHHH
Confidence 4799999999999999999984 443 88888875322222111100000000 112333321 11223
Q ss_pred HhCCCcEEEEecCCCCCCCCChhHHHhhhHHHHHHHHHHHHhhcCCCcEEEEEeCChhhHHH---HHHHHCC--CCCCCc
Q 019990 78 ACKDVNIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEKHAAPNCKVLVVANPANTNAL---ILKEFAP--SIPAKN 152 (332)
Q Consensus 78 a~~~aDiVi~~ag~~~~~~~~~~~~~~~N~~~~~~i~~~i~~~~~~~~~viv~snp~~~~~~---~~~~~~~--~~~~~~ 152 (332)
.++++|+|||+|+.... ..+..+....|+..+.++++++.+.+ . .+++.+|+. .+... ...+... ..++..
T Consensus 74 ~l~~~D~Vih~Aa~~~~-~~~~~~~~~~nv~gt~~ll~~a~~~~-~-~~~v~~SS~-~v~g~~~~~~~e~~~~~~~~~~~ 149 (657)
T PRK07201 74 ELGDIDHVVHLAAIYDL-TADEEAQRAANVDGTRNVVELAERLQ-A-ATFHHVSSI-AVAGDYEGVFREDDFDEGQGLPT 149 (657)
T ss_pred HhcCCCEEEECceeecC-CCCHHHHHHHHhHHHHHHHHHHHhcC-C-CeEEEEecc-ccccCccCccccccchhhcCCCC
Confidence 34899999999986432 23345567889999999999999874 2 255666542 11100 0000000 011123
Q ss_pred EEEeecccHHHHHHHHHHHcCCCCCCeeeeEEEecC
Q 019990 153 ITCLTRLDHNRAMGQISERLKVHVSDVKNVIIWGNH 188 (332)
Q Consensus 153 i~~~t~l~~~r~~~~~a~~~~v~~~~v~~~~V~G~h 188 (332)
.|+.+|...+++.. +..+++...+|..+|||++
T Consensus 150 ~Y~~sK~~~E~~~~---~~~g~~~~ilRp~~v~G~~ 182 (657)
T PRK07201 150 PYHRTKFEAEKLVR---EECGLPWRVYRPAVVVGDS 182 (657)
T ss_pred chHHHHHHHHHHHH---HcCCCcEEEEcCCeeeecC
Confidence 46777877777643 3468888999999999964
|
|
| >PLN02996 fatty acyl-CoA reductase | Back alignment and domain information |
|---|
Probab=98.80 E-value=2.2e-08 Score=98.06 Aligned_cols=185 Identities=16% Similarity=0.117 Sum_probs=106.1
Q ss_pred CCcEEEEEcCCChhHHHHHHHHHhcccCCCCCCeEEEEEecccchhhhh-hhHhhhhhh--------------------c
Q 019990 4 NPLRVLVTGAAGQIGYALVPMIARGIMLGPDQPVILHMLDIEPAAEALN-GVKMELIDA--------------------A 62 (332)
Q Consensus 4 ~~~kI~VtGaaG~IGs~l~~~L~~~~~~~~~~~~~i~l~D~~~~~~~~~-~~~~dl~~~--------------------~ 62 (332)
+.+.|+||||+||+|++++..|+..+. +..+|+++.+....+... ....++... .
T Consensus 10 ~~k~VlvTGaTGFlG~~ll~~LL~~~~----~v~~I~~LvR~~~~~~~~~rl~~~~~~~~~f~~~~~~~~~~~~~~~~~k 85 (491)
T PLN02996 10 ENKTILVTGATGFLAKIFVEKILRVQP----NVKKLYLLLRASDAKSATQRLHDEVIGKDLFKVLREKLGENLNSLISEK 85 (491)
T ss_pred CCCeEEEeCCCcHHHHHHHHHHHhhCC----CCCEEEEEEeCCCCCCHHHHHHHHHhhchHHHHHHHhcchhhhhhhhcC
Confidence 457899999999999999999886421 012676666543211111 000011000 0
Q ss_pred -cCCccceEEe-------CCHHHHhCCCcEEEEecCCCCCCCCChhHHHhhhHHHHHHHHHHHHhhcCCCcEEEEEeCC-
Q 019990 63 -FPLLKGVVAT-------TDVVEACKDVNIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEKHAAPNCKVLVVANP- 133 (332)
Q Consensus 63 -~~~~~~v~~~-------~~~~~a~~~aDiVi~~ag~~~~~~~~~~~~~~~N~~~~~~i~~~i~~~~~~~~~viv~snp- 133 (332)
.+..+|+... ..+.+.++++|+|||+|+..... .+..+....|+.++.++++.+++..... +++.+|+.
T Consensus 86 v~~i~GDl~~~~LGLs~~~~~~~l~~~vD~ViH~AA~v~~~-~~~~~~~~~Nv~gt~~ll~~a~~~~~~k-~~V~vST~~ 163 (491)
T PLN02996 86 VTPVPGDISYDDLGVKDSNLREEMWKEIDIVVNLAATTNFD-ERYDVALGINTLGALNVLNFAKKCVKVK-MLLHVSTAY 163 (491)
T ss_pred EEEEecccCCcCCCCChHHHHHHHHhCCCEEEECccccCCc-CCHHHHHHHHHHHHHHHHHHHHhcCCCC-eEEEEeeeE
Confidence 0112344311 11334567899999999865422 3445677889999999999998753122 45555522
Q ss_pred hh-------------------------hH----------HHHHHH---------------HCC--CCCCCcEEEeecccH
Q 019990 134 AN-------------------------TN----------ALILKE---------------FAP--SIPAKNITCLTRLDH 161 (332)
Q Consensus 134 ~~-------------------------~~----------~~~~~~---------------~~~--~~~~~~i~~~t~l~~ 161 (332)
+. .- .....+ ..+ ..+..+.|+.||..+
T Consensus 164 vyG~~~~~i~E~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pn~Y~~TK~~a 243 (491)
T PLN02996 164 VCGEKSGLILEKPFHMGETLNGNRKLDINEEKKLVKEKLKELNEQDASEEEITQAMKDLGMERAKLHGWPNTYVFTKAMG 243 (491)
T ss_pred EecCCCceeeeecCCCcccccccccCChHHHHHHHHHHHHHHHhhcCCHHHHHHHhhhhchhHHHhCCCCCchHhhHHHH
Confidence 10 00 000000 000 011124699999999
Q ss_pred HHHHHHHHHHcCCCCCCeeeeEEEecCCCceeeccc
Q 019990 162 NRAMGQISERLKVHVSDVKNVIIWGNHSSTQYPDVN 197 (332)
Q Consensus 162 ~r~~~~~a~~~~v~~~~v~~~~V~G~hg~~~v~~~s 197 (332)
+++...+++ +++...+|+++|+|+.. .-+|-|-
T Consensus 244 E~lv~~~~~--~lpv~i~RP~~V~G~~~-~p~~gwi 276 (491)
T PLN02996 244 EMLLGNFKE--NLPLVIIRPTMITSTYK-EPFPGWI 276 (491)
T ss_pred HHHHHHhcC--CCCEEEECCCEeccCCc-CCCCCcc
Confidence 998876654 89999999999999753 3345553
|
|
| >TIGR01179 galE UDP-glucose-4-epimerase | Back alignment and domain information |
|---|
Probab=98.80 E-value=1.5e-08 Score=93.61 Aligned_cols=169 Identities=14% Similarity=0.094 Sum_probs=103.9
Q ss_pred EEEEEcCCChhHHHHHHHHHhcccCCCCCCeEEEEEecccchhhhhhhHhhhhhh-cc-CCccceEEeCCHHHHhC--CC
Q 019990 7 RVLVTGAAGQIGYALVPMIARGIMLGPDQPVILHMLDIEPAAEALNGVKMELIDA-AF-PLLKGVVATTDVVEACK--DV 82 (332)
Q Consensus 7 kI~VtGaaG~IGs~l~~~L~~~~~~~~~~~~~i~l~D~~~~~~~~~~~~~dl~~~-~~-~~~~~v~~~~~~~~a~~--~a 82 (332)
||+||||+|+||++++..|++.+. +++++|..... ... ....+... .. ....++....++.++++ +.
T Consensus 1 kvlV~GatG~iG~~l~~~l~~~g~-------~V~~~~~~~~~-~~~-~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~ 71 (328)
T TIGR01179 1 KILVTGGAGYIGSHTVRQLLESGH-------EVVVLDNLSNG-SPE-ALKRGERITRVTFVEGDLRDRELLDRLFEEHKI 71 (328)
T ss_pred CEEEeCCCCHHHHHHHHHHHhCCC-------eEEEEeCCCcc-chh-hhhhhccccceEEEECCCCCHHHHHHHHHhCCC
Confidence 689999999999999999998775 77788753211 000 00111110 00 01124443344555554 68
Q ss_pred cEEEEecCCCCCC--CCChhHHHhhhHHHHHHHHHHHHhhcCCCcEEEEEeCChhhHH----HHHHHHCCCCCCCcEEEe
Q 019990 83 NIAVMVGGFPRKE--GMERKDVMSKNVSIYKAQASALEKHAAPNCKVLVVANPANTNA----LILKEFAPSIPAKNITCL 156 (332)
Q Consensus 83 DiVi~~ag~~~~~--~~~~~~~~~~N~~~~~~i~~~i~~~~~~~~~viv~snp~~~~~----~~~~~~~~~~~~~~i~~~ 156 (332)
|+|||+||..... .....+.+..|+.....+++++.+++ . .+++++|. ..... ..+.+ .....+...|+.
T Consensus 72 d~vv~~ag~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~-~-~~~v~~ss-~~~~g~~~~~~~~e-~~~~~~~~~y~~ 147 (328)
T TIGR01179 72 DAVIHFAGLIAVGESVQDPLKYYRNNVVNTLNLLEAMQQTG-V-KKFIFSSS-AAVYGEPSSIPISE-DSPLGPINPYGR 147 (328)
T ss_pred cEEEECccccCcchhhcCchhhhhhhHHHHHHHHHHHHhcC-C-CEEEEecc-hhhcCCCCCCCccc-cCCCCCCCchHH
Confidence 9999999864321 11233457789999999999998864 2 25555553 11100 00011 012233346788
Q ss_pred ecccHHHHHHHHHHH-cCCCCCCeeeeEEEecC
Q 019990 157 TRLDHNRAMGQISER-LKVHVSDVKNVIIWGNH 188 (332)
Q Consensus 157 t~l~~~r~~~~~a~~-~~v~~~~v~~~~V~G~h 188 (332)
++...+++...+++. .+++...+|.+.+||++
T Consensus 148 sK~~~e~~~~~~~~~~~~~~~~ilR~~~v~g~~ 180 (328)
T TIGR01179 148 SKLMSERILRDLSKADPGLSYVILRYFNVAGAD 180 (328)
T ss_pred HHHHHHHHHHHHHHhccCCCEEEEecCcccCCC
Confidence 888888887777777 79999999998899975
|
This enzyme interconverts UDP-glucose and UDP-galactose. A set of related proteins, some of which are tentatively identified as UDP-glucose-4-epimerase in Thermotoga maritima, Bacillus halodurans, and several archaea, but deeply branched from this set and lacking experimental evidence, are excluded from this model and described separately. |
| >PRK07067 sorbitol dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=98.75 E-value=6e-08 Score=86.79 Aligned_cols=153 Identities=18% Similarity=0.132 Sum_probs=91.3
Q ss_pred CCCcEEEEEcCCChhHHHHHHHHHhcccCCCCCCeEEEEEecccchhhhhhhHhhhhhhccCCccceEEeCCHHHHh---
Q 019990 3 KNPLRVLVTGAAGQIGYALVPMIARGIMLGPDQPVILHMLDIEPAAEALNGVKMELIDAAFPLLKGVVATTDVVEAC--- 79 (332)
Q Consensus 3 ~~~~kI~VtGaaG~IGs~l~~~L~~~~~~~~~~~~~i~l~D~~~~~~~~~~~~~dl~~~~~~~~~~v~~~~~~~~a~--- 79 (332)
.+.++|+||||+|+||.+++..|++.|. +++++|++. +.+.....++.........|+....++.+++
T Consensus 4 l~~~~vlItGas~~iG~~ia~~l~~~G~-------~v~~~~r~~--~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~ 74 (257)
T PRK07067 4 LQGKVALLTGAASGIGEAVAERYLAEGA-------RVVIADIKP--ARARLAALEIGPAAIAVSLDVTRQDSIDRIVAAA 74 (257)
T ss_pred CCCCEEEEeCCCchHHHHHHHHHHHcCC-------EEEEEcCCH--HHHHHHHHHhCCceEEEEccCCCHHHHHHHHHHH
Confidence 3457899999999999999999999886 899999754 2232222222111111123444333333333
Q ss_pred ----CCCcEEEEecCCCCC-C--CCCh---hHHHhhhHHHHHHHHHHHHhhc---CCCcEEEEEeCChhhHHHHHHHHCC
Q 019990 80 ----KDVNIAVMVGGFPRK-E--GMER---KDVMSKNVSIYKAQASALEKHA---APNCKVLVVANPANTNALILKEFAP 146 (332)
Q Consensus 80 ----~~aDiVi~~ag~~~~-~--~~~~---~~~~~~N~~~~~~i~~~i~~~~---~~~~~viv~snp~~~~~~~~~~~~~ 146 (332)
...|++||+||.... + ..+. ...+..|+.....+.+++..+. ...++++++|+.... .
T Consensus 75 ~~~~~~id~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~~iv~~sS~~~~---------~ 145 (257)
T PRK07067 75 VERFGGIDILFNNAALFDMAPILDISRDSYDRLFAVNVKGLFFLMQAVARHMVEQGRGGKIINMASQAGR---------R 145 (257)
T ss_pred HHHcCCCCEEEECCCcCCCCCcccCCHHHHHHHHHhhhhhHHHHHHHHHHHHHhcCCCcEEEEeCCHHhC---------C
Confidence 368999999986421 1 1121 2346778877777777765431 123466766653211 1
Q ss_pred CCCCCcEEEeecccHHHHHHHHHHHcC
Q 019990 147 SIPAKNITCLTRLDHNRAMGQISERLK 173 (332)
Q Consensus 147 ~~~~~~i~~~t~l~~~r~~~~~a~~~~ 173 (332)
+.++...|+.++.....+...+++.+.
T Consensus 146 ~~~~~~~Y~~sK~a~~~~~~~la~e~~ 172 (257)
T PRK07067 146 GEALVSHYCATKAAVISYTQSAALALI 172 (257)
T ss_pred CCCCCchhhhhHHHHHHHHHHHHHHhc
Confidence 234444678888877777777777653
|
|
| >PRK06180 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=98.75 E-value=8.1e-08 Score=87.13 Aligned_cols=151 Identities=13% Similarity=0.084 Sum_probs=86.6
Q ss_pred CCcEEEEEcCCChhHHHHHHHHHhcccCCCCCCeEEEEEecccchhhhhhhHhhhhhhccCCccceEEeCCHHHHhC---
Q 019990 4 NPLRVLVTGAAGQIGYALVPMIARGIMLGPDQPVILHMLDIEPAAEALNGVKMELIDAAFPLLKGVVATTDVVEACK--- 80 (332)
Q Consensus 4 ~~~kI~VtGaaG~IGs~l~~~L~~~~~~~~~~~~~i~l~D~~~~~~~~~~~~~dl~~~~~~~~~~v~~~~~~~~a~~--- 80 (332)
.+++|+||||+|+||++++..|++.|. +|++++++. +.+................|+....++.++++
T Consensus 3 ~~~~vlVtGasggiG~~la~~l~~~G~-------~V~~~~r~~--~~~~~l~~~~~~~~~~~~~D~~d~~~~~~~~~~~~ 73 (277)
T PRK06180 3 SMKTWLITGVSSGFGRALAQAALAAGH-------RVVGTVRSE--AARADFEALHPDRALARLLDVTDFDAIDAVVADAE 73 (277)
T ss_pred CCCEEEEecCCChHHHHHHHHHHhCcC-------EEEEEeCCH--HHHHHHHhhcCCCeeEEEccCCCHHHHHHHHHHHH
Confidence 456899999999999999999998875 899999753 22221111000000011123333333333332
Q ss_pred ----CCcEEEEecCCCCC---CCCChh---HHHhhhHHHHHHHHHHHHhhc--CCCcEEEEEeCChhhHHHHHHHHCCCC
Q 019990 81 ----DVNIAVMVGGFPRK---EGMERK---DVMSKNVSIYKAQASALEKHA--APNCKVLVVANPANTNALILKEFAPSI 148 (332)
Q Consensus 81 ----~aDiVi~~ag~~~~---~~~~~~---~~~~~N~~~~~~i~~~i~~~~--~~~~~viv~snp~~~~~~~~~~~~~~~ 148 (332)
..|+|||+||.... ...+.. ..+..|+.....+.+++..+. ....++|++|+-... .+.
T Consensus 74 ~~~~~~d~vv~~ag~~~~~~~~~~~~~~~~~~~~~n~~g~~~l~~~~~~~~~~~~~~~iv~iSS~~~~---------~~~ 144 (277)
T PRK06180 74 ATFGPIDVLVNNAGYGHEGAIEESPLAEMRRQFEVNVFGAVAMTKAVLPGMRARRRGHIVNITSMGGL---------ITM 144 (277)
T ss_pred HHhCCCCEEEECCCccCCcccccCCHHHHHHHHHHHhHHHHHHHHHHHHHHhccCCCEEEEEeccccc---------CCC
Confidence 58999999987421 112222 346788887777777654321 123466777653211 123
Q ss_pred CCCcEEEeecccHHHHHHHHHHHc
Q 019990 149 PAKNITCLTRLDHNRAMGQISERL 172 (332)
Q Consensus 149 ~~~~i~~~t~l~~~r~~~~~a~~~ 172 (332)
++...|+.++.....+...+++.+
T Consensus 145 ~~~~~Y~~sK~a~~~~~~~la~e~ 168 (277)
T PRK06180 145 PGIGYYCGSKFALEGISESLAKEV 168 (277)
T ss_pred CCcchhHHHHHHHHHHHHHHHHHh
Confidence 444467777776666666666654
|
|
| >PRK13394 3-hydroxybutyrate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=98.74 E-value=6.4e-08 Score=86.64 Aligned_cols=156 Identities=19% Similarity=0.161 Sum_probs=89.1
Q ss_pred CcEEEEEcCCChhHHHHHHHHHhcccCCCCCCeEEEEEecccchhhhhhhHhhhhhhcc---CCccceEEeCCHHHHh--
Q 019990 5 PLRVLVTGAAGQIGYALVPMIARGIMLGPDQPVILHMLDIEPAAEALNGVKMELIDAAF---PLLKGVVATTDVVEAC-- 79 (332)
Q Consensus 5 ~~kI~VtGaaG~IGs~l~~~L~~~~~~~~~~~~~i~l~D~~~~~~~~~~~~~dl~~~~~---~~~~~v~~~~~~~~a~-- 79 (332)
+++++||||+|+||++++..|++.|. +|++++++.. .......++.+... ....|+.....+.+++
T Consensus 7 ~~~vlItGasg~iG~~la~~l~~~G~-------~v~~~~r~~~--~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~ 77 (262)
T PRK13394 7 GKTAVVTGAASGIGKEIALELARAGA-------AVAIADLNQD--GANAVADEINKAGGKAIGVAMDVTNEDAVNAGIDK 77 (262)
T ss_pred CCEEEEECCCChHHHHHHHHHHHCCC-------eEEEEeCChH--HHHHHHHHHHhcCceEEEEECCCCCHHHHHHHHHH
Confidence 57899999999999999999999886 7888887642 22222222322110 0123443333333332
Q ss_pred -----CCCcEEEEecCCCCCC---CCC---hhHHHhhhHHH----HHHHHHHHHhhcCCCcEEEEEeCChhhHHHHHHHH
Q 019990 80 -----KDVNIAVMVGGFPRKE---GME---RKDVMSKNVSI----YKAQASALEKHAAPNCKVLVVANPANTNALILKEF 144 (332)
Q Consensus 80 -----~~aDiVi~~ag~~~~~---~~~---~~~~~~~N~~~----~~~i~~~i~~~~~~~~~viv~snp~~~~~~~~~~~ 144 (332)
...|+|||++|..... ..+ ....+..|+.. ++.+++.+.+.. +..+++++|+ ... .
T Consensus 78 ~~~~~~~~d~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~l~~~~~~~-~~~~iv~~ss-~~~------~- 148 (262)
T PRK13394 78 VAERFGSVDILVSNAGIQIVNPIENYSFADWKKMQAIHVDGAFLTTKAALKHMYKDD-RGGVVIYMGS-VHS------H- 148 (262)
T ss_pred HHHHcCCCCEEEECCccCCCCchhhCCHHHHHHHHHhhhhhHHHHHHHHHHHHHhhc-CCcEEEEEcc-hhh------c-
Confidence 3489999999874211 111 12345567766 566677763322 2346666664 211 0
Q ss_pred CCCCCCCcEEEeecccHHHHHHHHHHHcCCCCCCeee
Q 019990 145 APSIPAKNITCLTRLDHNRAMGQISERLKVHVSDVKN 181 (332)
Q Consensus 145 ~~~~~~~~i~~~t~l~~~r~~~~~a~~~~v~~~~v~~ 181 (332)
.+.+....|+.++.....+.+.+++.+. +..++.
T Consensus 149 -~~~~~~~~y~~sk~a~~~~~~~la~~~~--~~~i~v 182 (262)
T PRK13394 149 -EASPLKSAYVTAKHGLLGLARVLAKEGA--KHNVRS 182 (262)
T ss_pred -CCCCCCcccHHHHHHHHHHHHHHHHHhh--hcCeEE
Confidence 1233344677777776667667776642 334553
|
|
| >PRK06482 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=98.74 E-value=5.7e-08 Score=87.97 Aligned_cols=149 Identities=13% Similarity=0.148 Sum_probs=86.5
Q ss_pred cEEEEEcCCChhHHHHHHHHHhcccCCCCCCeEEEEEecccchhhhhhhHhhhhhhccCCccceEEeCCHHHH-------
Q 019990 6 LRVLVTGAAGQIGYALVPMIARGIMLGPDQPVILHMLDIEPAAEALNGVKMELIDAAFPLLKGVVATTDVVEA------- 78 (332)
Q Consensus 6 ~kI~VtGaaG~IGs~l~~~L~~~~~~~~~~~~~i~l~D~~~~~~~~~~~~~dl~~~~~~~~~~v~~~~~~~~a------- 78 (332)
++|+||||+|+||++++..|++.+. ++.+++++. +.+................|++...++.++
T Consensus 3 k~vlVtGasg~IG~~la~~L~~~g~-------~v~~~~r~~--~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~ 73 (276)
T PRK06482 3 KTWFITGASSGFGRGMTERLLARGD-------RVAATVRRP--DALDDLKARYGDRLWVLQLDVTDSAAVRAVVDRAFAA 73 (276)
T ss_pred CEEEEecCCCHHHHHHHHHHHHCCC-------EEEEEeCCH--HHHHHHHHhccCceEEEEccCCCHHHHHHHHHHHHHH
Confidence 5799999999999999999998875 788888753 222211111110000011234333333332
Q ss_pred hCCCcEEEEecCCCCCCC---CCh---hHHHhhhHHHHHHHHHHHHhhc--CCCcEEEEEeCChhhHHHHHHHHCCCCCC
Q 019990 79 CKDVNIAVMVGGFPRKEG---MER---KDVMSKNVSIYKAQASALEKHA--APNCKVLVVANPANTNALILKEFAPSIPA 150 (332)
Q Consensus 79 ~~~aDiVi~~ag~~~~~~---~~~---~~~~~~N~~~~~~i~~~i~~~~--~~~~~viv~snp~~~~~~~~~~~~~~~~~ 150 (332)
+.+.|+|||+||...... .+. ...+..|+.....+++++..+. ....++|++|+-... .+.|.
T Consensus 74 ~~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~g~~~l~~~~~~~~~~~~~~~iv~~sS~~~~---------~~~~~ 144 (276)
T PRK06482 74 LGRIDVVVSNAGYGLFGAAEELSDAQIRRQIDTNLIGSIQVIRAALPHLRRQGGGRIVQVSSEGGQ---------IAYPG 144 (276)
T ss_pred cCCCCEEEECCCCCCCcccccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCEEEEEcCcccc---------cCCCC
Confidence 245799999998753211 122 2356678888888888763321 122466666652211 12344
Q ss_pred CcEEEeecccHHHHHHHHHHHc
Q 019990 151 KNITCLTRLDHNRAMGQISERL 172 (332)
Q Consensus 151 ~~i~~~t~l~~~r~~~~~a~~~ 172 (332)
...|+.++.....+...+++.+
T Consensus 145 ~~~Y~~sK~a~~~~~~~l~~~~ 166 (276)
T PRK06482 145 FSLYHATKWGIEGFVEAVAQEV 166 (276)
T ss_pred CchhHHHHHHHHHHHHHHHHHh
Confidence 4467888887777777777664
|
|
| >PLN02260 probable rhamnose biosynthetic enzyme | Back alignment and domain information |
|---|
Probab=98.70 E-value=9.4e-08 Score=97.45 Aligned_cols=144 Identities=11% Similarity=0.073 Sum_probs=87.8
Q ss_pred CCcEEEEEcCCChhHHHHHHHHHhcccCCCCCCeEEEE--EecccchhhhhhhHhhhhhhccCCccceEEeCCHHHHh--
Q 019990 4 NPLRVLVTGAAGQIGYALVPMIARGIMLGPDQPVILHM--LDIEPAAEALNGVKMELIDAAFPLLKGVVATTDVVEAC-- 79 (332)
Q Consensus 4 ~~~kI~VtGaaG~IGs~l~~~L~~~~~~~~~~~~~i~l--~D~~~~~~~~~~~~~dl~~~~~~~~~~v~~~~~~~~a~-- 79 (332)
..|||+||||+||||++|+..|...++ ++.. .|+. |. ..+...+
T Consensus 379 ~~mkiLVtGa~G~iG~~l~~~L~~~g~-------~v~~~~~~l~-----------d~--------------~~v~~~i~~ 426 (668)
T PLN02260 379 PSLKFLIYGRTGWIGGLLGKLCEKQGI-------AYEYGKGRLE-----------DR--------------SSLLADIRN 426 (668)
T ss_pred CCceEEEECCCchHHHHHHHHHHhCCC-------eEEeeccccc-----------cH--------------HHHHHHHHh
Confidence 357999999999999999999988764 4421 1111 00 0111222
Q ss_pred CCCcEEEEecCCCCCC-----CCChhHHHhhhHHHHHHHHHHHHhhcCCCcEEEEEeC-Ch-hh--------HHHHHHHH
Q 019990 80 KDVNIAVMVGGFPRKE-----GMERKDVMSKNVSIYKAQASALEKHAAPNCKVLVVAN-PA-NT--------NALILKEF 144 (332)
Q Consensus 80 ~~aDiVi~~ag~~~~~-----~~~~~~~~~~N~~~~~~i~~~i~~~~~~~~~viv~sn-p~-~~--------~~~~~~~~ 144 (332)
.+.|+|||+|+....+ .....+.+..|+.++.++++++++++ ++++++|+ .+ +. -.+ +.+.
T Consensus 427 ~~pd~Vih~Aa~~~~~~~~~~~~~~~~~~~~N~~gt~~l~~a~~~~g---~~~v~~Ss~~v~~~~~~~~~~~~~p-~~E~ 502 (668)
T PLN02260 427 VKPTHVFNAAGVTGRPNVDWCESHKVETIRANVVGTLTLADVCRENG---LLMMNFATGCIFEYDAKHPEGSGIG-FKEE 502 (668)
T ss_pred hCCCEEEECCcccCCCCCChHHhCHHHHHHHHhHHHHHHHHHHHHcC---CeEEEEcccceecCCcccccccCCC-CCcC
Confidence 2689999999864221 12334567889999999999999975 34455543 22 00 001 1111
Q ss_pred CCCCCCCcEEEeecccHHHHHHHHHHHcCCCCCCeeeeEEEecC
Q 019990 145 APSIPAKNITCLTRLDHNRAMGQISERLKVHVSDVKNVIIWGNH 188 (332)
Q Consensus 145 ~~~~~~~~i~~~t~l~~~r~~~~~a~~~~v~~~~v~~~~V~G~h 188 (332)
....++...|+.+|+..+++...+++. ..+|...+||.+
T Consensus 503 ~~~~~~~~~Yg~sK~~~E~~~~~~~~~-----~~~r~~~~~~~~ 541 (668)
T PLN02260 503 DKPNFTGSFYSKTKAMVEELLREYDNV-----CTLRVRMPISSD 541 (668)
T ss_pred CCCCCCCChhhHHHHHHHHHHHhhhhh-----eEEEEEEecccC
Confidence 111233457999999999987766533 335555667643
|
|
| >PRK07806 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=98.69 E-value=1.3e-07 Score=84.08 Aligned_cols=170 Identities=16% Similarity=0.152 Sum_probs=97.3
Q ss_pred CCC-CCcEEEEEcCCChhHHHHHHHHHhcccCCCCCCeEEEEEecccchhhhhhhHhhhhhhc--c-CCccceEEeCCHH
Q 019990 1 MAK-NPLRVLVTGAAGQIGYALVPMIARGIMLGPDQPVILHMLDIEPAAEALNGVKMELIDAA--F-PLLKGVVATTDVV 76 (332)
Q Consensus 1 m~~-~~~kI~VtGaaG~IGs~l~~~L~~~~~~~~~~~~~i~l~D~~~~~~~~~~~~~dl~~~~--~-~~~~~v~~~~~~~ 76 (332)
|++ +.++++||||+|+||++++..|++.|. +|++++++.. +.+.....++.... . ....|++...++.
T Consensus 1 ~~~~~~k~vlItGasggiG~~l~~~l~~~G~-------~V~~~~r~~~-~~~~~~~~~l~~~~~~~~~~~~D~~~~~~~~ 72 (248)
T PRK07806 1 MGDLPGKTALVTGSSRGIGADTAKILAGAGA-------HVVVNYRQKA-PRANKVVAEIEAAGGRASAVGADLTDEESVA 72 (248)
T ss_pred CCCCCCcEEEEECCCCcHHHHHHHHHHHCCC-------EEEEEeCCch-HhHHHHHHHHHhcCCceEEEEcCCCCHHHHH
Confidence 543 347899999999999999999998875 7888776432 12222222222110 0 1123444333333
Q ss_pred HHh-------CCCcEEEEecCCCCCCCCChhHHHhhhHHHHHHHHHHHHhhcCCCcEEEEEeCChhhHHHHHHHHCCCCC
Q 019990 77 EAC-------KDVNIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEKHAAPNCKVLVVANPANTNALILKEFAPSIP 149 (332)
Q Consensus 77 ~a~-------~~aDiVi~~ag~~~~~~~~~~~~~~~N~~~~~~i~~~i~~~~~~~~~viv~snp~~~~~~~~~~~~~~~~ 149 (332)
+++ .+.|+|||.||.......+....+..|......+++.+.++.....+++++|+.... + .... ...+
T Consensus 73 ~~~~~~~~~~~~~d~vi~~ag~~~~~~~~~~~~~~vn~~~~~~l~~~~~~~~~~~~~iv~isS~~~~--~-~~~~-~~~~ 148 (248)
T PRK07806 73 ALMDTAREEFGGLDALVLNASGGMESGMDEDYAMRLNRDAQRNLARAALPLMPAGSRVVFVTSHQAH--F-IPTV-KTMP 148 (248)
T ss_pred HHHHHHHHhCCCCcEEEECCCCCCCCCCCcceeeEeeeHHHHHHHHHHHhhccCCceEEEEeCchhh--c-Cccc-cCCc
Confidence 332 368999999976422222223456778888888888888764233566766653210 0 0000 1122
Q ss_pred CCcEEEeecccHHHHHHHHHHHcCCCCCCeeeeEE
Q 019990 150 AKNITCLTRLDHNRAMGQISERLKVHVSDVKNVII 184 (332)
Q Consensus 150 ~~~i~~~t~l~~~r~~~~~a~~~~v~~~~v~~~~V 184 (332)
....|+.+|...+.+.+.++..+. +..++...|
T Consensus 149 ~~~~Y~~sK~a~e~~~~~l~~~~~--~~~i~v~~v 181 (248)
T PRK07806 149 EYEPVARSKRAGEDALRALRPELA--EKGIGFVVV 181 (248)
T ss_pred cccHHHHHHHHHHHHHHHHHHHhh--ccCeEEEEe
Confidence 222467788888888777776654 455775444
|
|
| >COG1091 RfbD dTDP-4-dehydrorhamnose reductase [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Probab=98.69 E-value=1.2e-07 Score=85.15 Aligned_cols=153 Identities=14% Similarity=0.180 Sum_probs=99.4
Q ss_pred cEEEEEcCCChhHHHHHHHHHhcccCCCCCCeEEEEEecccchhhhhhhHhhhhhhccCCccceEEeCCHHHHhC--CCc
Q 019990 6 LRVLVTGAAGQIGYALVPMIARGIMLGPDQPVILHMLDIEPAAEALNGVKMELIDAAFPLLKGVVATTDVVEACK--DVN 83 (332)
Q Consensus 6 ~kI~VtGaaG~IGs~l~~~L~~~~~~~~~~~~~i~l~D~~~~~~~~~~~~~dl~~~~~~~~~~v~~~~~~~~a~~--~aD 83 (332)
|||+|||++|.+|+.|...|. .+. ++...|... +|+. ....+.+.++ ..|
T Consensus 1 M~iLi~G~~GqLG~~L~~~l~-~~~-------~v~a~~~~~---------~Dit-----------d~~~v~~~i~~~~PD 52 (281)
T COG1091 1 MKILITGANGQLGTELRRALP-GEF-------EVIATDRAE---------LDIT-----------DPDAVLEVIRETRPD 52 (281)
T ss_pred CcEEEEcCCChHHHHHHHHhC-CCc-------eEEeccCcc---------cccc-----------ChHHHHHHHHhhCCC
Confidence 359999999999999999887 333 677777532 2332 2233455555 469
Q ss_pred EEEEecCCCC--CCCCChhHHHhhhHHHHHHHHHHHHhhcCCCcEEEEEeC-Ch-hhHHHHHHHHCCCCCCCcEEEeecc
Q 019990 84 IAVMVGGFPR--KEGMERKDVMSKNVSIYKAQASALEKHAAPNCKVLVVAN-PA-NTNALILKEFAPSIPAKNITCLTRL 159 (332)
Q Consensus 84 iVi~~ag~~~--~~~~~~~~~~~~N~~~~~~i~~~i~~~~~~~~~viv~sn-p~-~~~~~~~~~~~~~~~~~~i~~~t~l 159 (332)
+|||+|++.. +...+++.-+..|.....++++++++.+ +++|.+|. -+ |-...-.++..-.-+|-.+||-||+
T Consensus 53 vVIn~AAyt~vD~aE~~~e~A~~vNa~~~~~lA~aa~~~g---a~lVhiSTDyVFDG~~~~~Y~E~D~~~P~nvYG~sKl 129 (281)
T COG1091 53 VVINAAAYTAVDKAESEPELAFAVNATGAENLARAAAEVG---ARLVHISTDYVFDGEKGGPYKETDTPNPLNVYGRSKL 129 (281)
T ss_pred EEEECccccccccccCCHHHHHHhHHHHHHHHHHHHHHhC---CeEEEeecceEecCCCCCCCCCCCCCCChhhhhHHHH
Confidence 9999998753 2333445557889999999999999986 46666663 22 1000000111111345568999999
Q ss_pred cHHHHHHHHHHHcCCCCCCeeeeEEEecCCCcee
Q 019990 160 DHNRAMGQISERLKVHVSDVKNVIIWGNHSSTQY 193 (332)
Q Consensus 160 ~~~r~~~~~a~~~~v~~~~v~~~~V~G~hg~~~v 193 (332)
..+.+.... +-+.-.+|..-|||++|.+.+
T Consensus 130 ~GE~~v~~~----~~~~~I~Rtswv~g~~g~nFv 159 (281)
T COG1091 130 AGEEAVRAA----GPRHLILRTSWVYGEYGNNFV 159 (281)
T ss_pred HHHHHHHHh----CCCEEEEEeeeeecCCCCCHH
Confidence 888765443 445556787778999986555
|
|
| >PLN03209 translocon at the inner envelope of chloroplast subunit 62; Provisional | Back alignment and domain information |
|---|
Probab=98.68 E-value=1.4e-07 Score=92.57 Aligned_cols=118 Identities=11% Similarity=0.064 Sum_probs=77.4
Q ss_pred CCcEEEEEcCCChhHHHHHHHHHhcccCCCCCCeEEEEEecccchhhhhhhHhhhhhh-----------cc-CCccceEE
Q 019990 4 NPLRVLVTGAAGQIGYALVPMIARGIMLGPDQPVILHMLDIEPAAEALNGVKMELIDA-----------AF-PLLKGVVA 71 (332)
Q Consensus 4 ~~~kI~VtGaaG~IGs~l~~~L~~~~~~~~~~~~~i~l~D~~~~~~~~~~~~~dl~~~-----------~~-~~~~~v~~ 71 (332)
+.+.|+||||+|+||++++..|++.|+ +|++++++. +.+.....++... .. ....|+..
T Consensus 79 ~gKvVLVTGATGgIG~aLAr~LLk~G~-------~Vval~Rn~--ekl~~l~~~l~~~~L~~~Ga~~~~~v~iV~gDLtD 149 (576)
T PLN03209 79 DEDLAFVAGATGKVGSRTVRELLKLGF-------RVRAGVRSA--QRAESLVQSVKQMKLDVEGTQPVEKLEIVECDLEK 149 (576)
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHCCC-------eEEEEeCCH--HHHHHHHHHhhhhccccccccccCceEEEEecCCC
Confidence 456799999999999999999998886 788888753 2232222112110 00 11234444
Q ss_pred eCCHHHHhCCCcEEEEecCCCCCCCCChhHHHhhhHHHHHHHHHHHHhhcCCCcEEEEEeC
Q 019990 72 TTDVVEACKDVNIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEKHAAPNCKVLVVAN 132 (332)
Q Consensus 72 ~~~~~~a~~~aDiVi~~ag~~~~~~~~~~~~~~~N~~~~~~i~~~i~~~~~~~~~viv~sn 132 (332)
..++.+++.++|+||+++|............+..|..++.++++++.+.+ . .+||++|.
T Consensus 150 ~esI~~aLggiDiVVn~AG~~~~~v~d~~~~~~VN~~Gt~nLl~Aa~~ag-V-gRIV~VSS 208 (576)
T PLN03209 150 PDQIGPALGNASVVICCIGASEKEVFDVTGPYRIDYLATKNLVDAATVAK-V-NHFILVTS 208 (576)
T ss_pred HHHHHHHhcCCCEEEEccccccccccchhhHHHHHHHHHHHHHHHHHHhC-C-CEEEEEcc
Confidence 44566678999999999986532211222346678889999999998764 2 36677665
|
|
| >PRK05653 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Validated | Back alignment and domain information |
|---|
Probab=98.68 E-value=1.4e-07 Score=83.40 Aligned_cols=154 Identities=19% Similarity=0.150 Sum_probs=87.0
Q ss_pred CCCCCcEEEEEcCCChhHHHHHHHHHhcccCCCCCCeEEEEEecccchhhhhhhHhhhhhhc--c-CCccceEEeCCHHH
Q 019990 1 MAKNPLRVLVTGAAGQIGYALVPMIARGIMLGPDQPVILHMLDIEPAAEALNGVKMELIDAA--F-PLLKGVVATTDVVE 77 (332)
Q Consensus 1 m~~~~~kI~VtGaaG~IGs~l~~~L~~~~~~~~~~~~~i~l~D~~~~~~~~~~~~~dl~~~~--~-~~~~~v~~~~~~~~ 77 (332)
|++++++|+||||+|++|++++..|++.|. +|.+++++.. .......++.... . ....|+....++.+
T Consensus 1 ~~~~~~~ilItGasg~iG~~l~~~l~~~g~-------~v~~~~r~~~--~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~ 71 (246)
T PRK05653 1 MSLQGKTALVTGASRGIGRAIALRLAADGA-------KVVIYDSNEE--AAEALAAELRAAGGEARVLVFDVSDEAAVRA 71 (246)
T ss_pred CCCCCCEEEEECCCcHHHHHHHHHHHHCCC-------EEEEEeCChh--HHHHHHHHHHhcCCceEEEEccCCCHHHHHH
Confidence 666678999999999999999999998876 7888887542 2222222222111 0 01123333222333
Q ss_pred Hh-------CCCcEEEEecCCCCCC---CCCh---hHHHhhhHHHHHHHHHHHHhhc--CCCcEEEEEeCChhhHHHHHH
Q 019990 78 AC-------KDVNIAVMVGGFPRKE---GMER---KDVMSKNVSIYKAQASALEKHA--APNCKVLVVANPANTNALILK 142 (332)
Q Consensus 78 a~-------~~aDiVi~~ag~~~~~---~~~~---~~~~~~N~~~~~~i~~~i~~~~--~~~~~viv~snp~~~~~~~~~ 142 (332)
++ ...|+|||++|..... ..+. ...+..|+.....+.+.+..+- ....+++++|.....
T Consensus 72 ~~~~~~~~~~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~l~~~~~~~ii~~ss~~~~------ 145 (246)
T PRK05653 72 LIEAAVEAFGALDILVNNAGITRDALLPRMSEEDWDRVIDVNLTGTFNVVRAALPPMIKARYGRIVNISSVSGV------ 145 (246)
T ss_pred HHHHHHHHhCCCCEEEECCCcCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCcEEEEECcHHhc------
Confidence 33 3469999999763211 1122 2345677777777766664321 112356666642110
Q ss_pred HHCCCCCCCcEEEeecccHHHHHHHHHHHc
Q 019990 143 EFAPSIPAKNITCLTRLDHNRAMGQISERL 172 (332)
Q Consensus 143 ~~~~~~~~~~i~~~t~l~~~r~~~~~a~~~ 172 (332)
.+.++...|+.++.....+...+++.+
T Consensus 146 ---~~~~~~~~y~~sk~~~~~~~~~l~~~~ 172 (246)
T PRK05653 146 ---TGNPGQTNYSAAKAGVIGFTKALALEL 172 (246)
T ss_pred ---cCCCCCcHhHhHHHHHHHHHHHHHHHH
Confidence 122333345667766667777777664
|
|
| >PRK07523 gluconate 5-dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=98.68 E-value=1.7e-07 Score=83.71 Aligned_cols=157 Identities=18% Similarity=0.182 Sum_probs=91.4
Q ss_pred CcEEEEEcCCChhHHHHHHHHHhcccCCCCCCeEEEEEecccchhhhhhhHhhhhhhc--c-CCccceEEeCCHHHHh--
Q 019990 5 PLRVLVTGAAGQIGYALVPMIARGIMLGPDQPVILHMLDIEPAAEALNGVKMELIDAA--F-PLLKGVVATTDVVEAC-- 79 (332)
Q Consensus 5 ~~kI~VtGaaG~IGs~l~~~L~~~~~~~~~~~~~i~l~D~~~~~~~~~~~~~dl~~~~--~-~~~~~v~~~~~~~~a~-- 79 (332)
.++|+||||+|+||++++..|++.|. +|++.+++. +.+......+.+.. . .+..|+....++.+++
T Consensus 10 ~k~vlItGa~g~iG~~ia~~l~~~G~-------~V~~~~r~~--~~~~~~~~~i~~~~~~~~~~~~D~~~~~~~~~~~~~ 80 (255)
T PRK07523 10 GRRALVTGSSQGIGYALAEGLAQAGA-------EVILNGRDP--AKLAAAAESLKGQGLSAHALAFDVTDHDAVRAAIDA 80 (255)
T ss_pred CCEEEEECCcchHHHHHHHHHHHcCC-------EEEEEeCCH--HHHHHHHHHHHhcCceEEEEEccCCCHHHHHHHHHH
Confidence 46899999999999999999998886 889998764 22332222232210 0 1112443333333333
Q ss_pred -----CCCcEEEEecCCCCCC---CCCh---hHHHhhhHHHHHHHHHHHHhhc--CCCcEEEEEeCChhhHHHHHHHHCC
Q 019990 80 -----KDVNIAVMVGGFPRKE---GMER---KDVMSKNVSIYKAQASALEKHA--APNCKVLVVANPANTNALILKEFAP 146 (332)
Q Consensus 80 -----~~aDiVi~~ag~~~~~---~~~~---~~~~~~N~~~~~~i~~~i~~~~--~~~~~viv~snp~~~~~~~~~~~~~ 146 (332)
...|+|||.+|..... ..+. ...+..|+.....+.+.+.++. ....+++++|+.... .
T Consensus 81 ~~~~~~~~d~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~g~iv~iss~~~~---------~ 151 (255)
T PRK07523 81 FEAEIGPIDILVNNAGMQFRTPLEDFPADAFERLLRTNISSVFYVGQAVARHMIARGAGKIINIASVQSA---------L 151 (255)
T ss_pred HHHhcCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHhCCeEEEEEccchhc---------c
Confidence 3579999999874211 1121 2345678777777777666542 123466777653221 1
Q ss_pred CCCCCcEEEeecccHHHHHHHHHHHcCCCCCCeee
Q 019990 147 SIPAKNITCLTRLDHNRAMGQISERLKVHVSDVKN 181 (332)
Q Consensus 147 ~~~~~~i~~~t~l~~~r~~~~~a~~~~v~~~~v~~ 181 (332)
+.+....|+.++.....+.+.++..+. +..++.
T Consensus 152 ~~~~~~~y~~sK~a~~~~~~~~a~e~~--~~gi~v 184 (255)
T PRK07523 152 ARPGIAPYTATKGAVGNLTKGMATDWA--KHGLQC 184 (255)
T ss_pred CCCCCccHHHHHHHHHHHHHHHHHHhh--HhCeEE
Confidence 223333577788777777777776553 234553
|
|
| >PRK06500 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=98.67 E-value=1.2e-07 Score=84.30 Aligned_cols=151 Identities=14% Similarity=0.142 Sum_probs=87.3
Q ss_pred CCcEEEEEcCCChhHHHHHHHHHhcccCCCCCCeEEEEEecccchhhhhhhHhhhhhhccCCccceEEeCCH-------H
Q 019990 4 NPLRVLVTGAAGQIGYALVPMIARGIMLGPDQPVILHMLDIEPAAEALNGVKMELIDAAFPLLKGVVATTDV-------V 76 (332)
Q Consensus 4 ~~~kI~VtGaaG~IGs~l~~~L~~~~~~~~~~~~~i~l~D~~~~~~~~~~~~~dl~~~~~~~~~~v~~~~~~-------~ 76 (332)
+.++|+||||+|+||++++..|++.|. ++++++++. +.+.....++.........|+....+. .
T Consensus 5 ~~k~vlItGasg~iG~~la~~l~~~g~-------~v~~~~r~~--~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~ 75 (249)
T PRK06500 5 QGKTALITGGTSGIGLETARQFLAEGA-------RVAITGRDP--ASLEAARAELGESALVIRADAGDVAAQKALAQALA 75 (249)
T ss_pred CCCEEEEeCCCchHHHHHHHHHHHCCC-------EEEEecCCH--HHHHHHHHHhCCceEEEEecCCCHHHHHHHHHHHH
Confidence 346899999999999999999998875 788888753 222211111110000011122211111 1
Q ss_pred HHhCCCcEEEEecCCCCCC---CCCh---hHHHhhhHHHHHHHHHHHHhhcCCCcEEEEEeCChhhHHHHHHHHCCCCCC
Q 019990 77 EACKDVNIAVMVGGFPRKE---GMER---KDVMSKNVSIYKAQASALEKHAAPNCKVLVVANPANTNALILKEFAPSIPA 150 (332)
Q Consensus 77 ~a~~~aDiVi~~ag~~~~~---~~~~---~~~~~~N~~~~~~i~~~i~~~~~~~~~viv~snp~~~~~~~~~~~~~~~~~ 150 (332)
+.+...|+|||.||..... ..+. ...+..|+.....+.+++..+-....++++.++.... .+.+.
T Consensus 76 ~~~~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~i~~~S~~~~---------~~~~~ 146 (249)
T PRK06500 76 EAFGRLDAVFINAGVAKFAPLEDWDEAMFDRSFNTNVKGPYFLIQALLPLLANPASIVLNGSINAH---------IGMPN 146 (249)
T ss_pred HHhCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHhcCCEEEEEechHhc---------cCCCC
Confidence 2234689999999864321 1122 2356788888888888887542122355555543211 12333
Q ss_pred CcEEEeecccHHHHHHHHHHHc
Q 019990 151 KNITCLTRLDHNRAMGQISERL 172 (332)
Q Consensus 151 ~~i~~~t~l~~~r~~~~~a~~~ 172 (332)
...|+.++.....+.+.+++.+
T Consensus 147 ~~~Y~~sK~a~~~~~~~la~e~ 168 (249)
T PRK06500 147 SSVYAASKAALLSLAKTLSGEL 168 (249)
T ss_pred ccHHHHHHHHHHHHHHHHHHHh
Confidence 3467778877777777777765
|
|
| >PRK06138 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=98.66 E-value=1e-07 Score=84.78 Aligned_cols=152 Identities=16% Similarity=0.104 Sum_probs=87.3
Q ss_pred CCCCCcEEEEEcCCChhHHHHHHHHHhcccCCCCCCeEEEEEecccchhhhhhhHhhhh-hhcc-CCccceEEeCCHHHH
Q 019990 1 MAKNPLRVLVTGAAGQIGYALVPMIARGIMLGPDQPVILHMLDIEPAAEALNGVKMELI-DAAF-PLLKGVVATTDVVEA 78 (332)
Q Consensus 1 m~~~~~kI~VtGaaG~IGs~l~~~L~~~~~~~~~~~~~i~l~D~~~~~~~~~~~~~dl~-~~~~-~~~~~v~~~~~~~~a 78 (332)
|..+.++++||||+|+||++++..|++.|. ++.+++++. +.......++. .... ....|+....++.++
T Consensus 1 m~~~~k~~lItG~sg~iG~~la~~l~~~G~-------~v~~~~r~~--~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~ 71 (252)
T PRK06138 1 MRLAGRVAIVTGAGSGIGRATAKLFAREGA-------RVVVADRDA--EAAERVAAAIAAGGRAFARQGDVGSAEAVEAL 71 (252)
T ss_pred CCCCCcEEEEeCCCchHHHHHHHHHHHCCC-------eEEEecCCH--HHHHHHHHHHhcCCeEEEEEcCCCCHHHHHHH
Confidence 666678999999999999999999998875 788888753 22222222221 0000 112344433333333
Q ss_pred h-------CCCcEEEEecCCCCCC---CCChh---HHHhhhHHHHHHHHH----HHHhhcCCCcEEEEEeCChhhHHHHH
Q 019990 79 C-------KDVNIAVMVGGFPRKE---GMERK---DVMSKNVSIYKAQAS----ALEKHAAPNCKVLVVANPANTNALIL 141 (332)
Q Consensus 79 ~-------~~aDiVi~~ag~~~~~---~~~~~---~~~~~N~~~~~~i~~----~i~~~~~~~~~viv~snp~~~~~~~~ 141 (332)
+ .+.|+|||.+|..... ..+.+ ..+..|......+.+ .+++.. ..+++++|+....
T Consensus 72 ~~~i~~~~~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~--~~~ii~~sS~~~~----- 144 (252)
T PRK06138 72 VDFVAARWGRLDVLVNNAGFGCGGTVVTTDEADWDAVMRVNVGGVFLWAKYAIPIMQRQG--GGSIVNTASQLAL----- 144 (252)
T ss_pred HHHHHHHcCCCCEEEECCCCCCCCCcccCCHHHHHHHHhhhhhhHHHHHHHHHHHHHhcC--CeEEEEECChhhc-----
Confidence 3 3689999999864211 12222 235667665544444 444432 3456666642111
Q ss_pred HHHCCCCCCCcEEEeecccHHHHHHHHHHHc
Q 019990 142 KEFAPSIPAKNITCLTRLDHNRAMGQISERL 172 (332)
Q Consensus 142 ~~~~~~~~~~~i~~~t~l~~~r~~~~~a~~~ 172 (332)
.+.+....|+.++.....+...+++.+
T Consensus 145 ----~~~~~~~~Y~~sK~a~~~~~~~l~~~~ 171 (252)
T PRK06138 145 ----AGGRGRAAYVASKGAIASLTRAMALDH 171 (252)
T ss_pred ----cCCCCccHHHHHHHHHHHHHHHHHHHH
Confidence 122333456777877777777777765
|
|
| >PRK07231 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=98.65 E-value=2.6e-07 Score=82.10 Aligned_cols=161 Identities=17% Similarity=0.142 Sum_probs=90.2
Q ss_pred CCCCCcEEEEEcCCChhHHHHHHHHHhcccCCCCCCeEEEEEecccchhhhhhhHhhhhhh-cc-CCccceEEeCCHHHH
Q 019990 1 MAKNPLRVLVTGAAGQIGYALVPMIARGIMLGPDQPVILHMLDIEPAAEALNGVKMELIDA-AF-PLLKGVVATTDVVEA 78 (332)
Q Consensus 1 m~~~~~kI~VtGaaG~IGs~l~~~L~~~~~~~~~~~~~i~l~D~~~~~~~~~~~~~dl~~~-~~-~~~~~v~~~~~~~~a 78 (332)
|..+.++|+||||+|++|++++..|++.|. +|.+++++.. .......++.+. .. ....|+....++.++
T Consensus 1 ~~~~~~~vlItGasg~iG~~l~~~l~~~G~-------~V~~~~r~~~--~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~ 71 (251)
T PRK07231 1 MRLEGKVAIVTGASSGIGEGIARRFAAEGA-------RVVVTDRNEE--AAERVAAEILAGGRAIAVAADVSDEADVEAA 71 (251)
T ss_pred CCcCCcEEEEECCCChHHHHHHHHHHHCCC-------EEEEEeCCHH--HHHHHHHHHhcCCeEEEEECCCCCHHHHHHH
Confidence 666678999999999999999999998876 7999998642 222222222210 00 112344433333333
Q ss_pred h-------CCCcEEEEecCCCCCC----CCCh---hHHHhhhHHHHHHHHHHHHhhc--CCCcEEEEEeCChhhHHHHHH
Q 019990 79 C-------KDVNIAVMVGGFPRKE----GMER---KDVMSKNVSIYKAQASALEKHA--APNCKVLVVANPANTNALILK 142 (332)
Q Consensus 79 ~-------~~aDiVi~~ag~~~~~----~~~~---~~~~~~N~~~~~~i~~~i~~~~--~~~~~viv~snp~~~~~~~~~ 142 (332)
+ ...|+|||.+|..... ..+. .+.+..|......+.+.+..+. .....++++|+....
T Consensus 72 ~~~~~~~~~~~d~vi~~ag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~iv~~sS~~~~------ 145 (251)
T PRK07231 72 VAAALERFGSVDILVNNAGTTHRNGPLLDVDEAEFDRIFAVNVKSPYLWTQAAVPAMRGEGGGAIVNVASTAGL------ 145 (251)
T ss_pred HHHHHHHhCCCCEEEECCCCCCCCCChhhCCHHHHHHHHhhhhHHHHHHHHHHHHHHHhcCCcEEEEEcChhhc------
Confidence 3 3579999999863211 1111 2345667765555555444321 123456666652110
Q ss_pred HHCCCCCCCcEEEeecccHHHHHHHHHHHcCCCCCCeee
Q 019990 143 EFAPSIPAKNITCLTRLDHNRAMGQISERLKVHVSDVKN 181 (332)
Q Consensus 143 ~~~~~~~~~~i~~~t~l~~~r~~~~~a~~~~v~~~~v~~ 181 (332)
.+.+....|+.++.....+...+++.++ +..++.
T Consensus 146 ---~~~~~~~~y~~sk~~~~~~~~~~a~~~~--~~~i~v 179 (251)
T PRK07231 146 ---RPRPGLGWYNASKGAVITLTKALAAELG--PDKIRV 179 (251)
T ss_pred ---CCCCCchHHHHHHHHHHHHHHHHHHHhh--hhCeEE
Confidence 1223333456677666666777777654 334553
|
|
| >PRK12746 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=98.64 E-value=8.1e-07 Score=79.23 Aligned_cols=156 Identities=14% Similarity=0.108 Sum_probs=89.4
Q ss_pred CCC-CCcEEEEEcCCChhHHHHHHHHHhcccCCCCCCeEEEEEecccchhhhhhhHhhhhhh--cc-CCccceEEeCCHH
Q 019990 1 MAK-NPLRVLVTGAAGQIGYALVPMIARGIMLGPDQPVILHMLDIEPAAEALNGVKMELIDA--AF-PLLKGVVATTDVV 76 (332)
Q Consensus 1 m~~-~~~kI~VtGaaG~IGs~l~~~L~~~~~~~~~~~~~i~l~D~~~~~~~~~~~~~dl~~~--~~-~~~~~v~~~~~~~ 76 (332)
|.+ +.++|+||||+|+||++++..|++.|. ++.+...+. .+.+.....++... .. .+..|+....++.
T Consensus 1 ~~~~~~~~ilItGasg~iG~~la~~l~~~G~-------~v~i~~~r~-~~~~~~~~~~~~~~~~~~~~~~~D~~d~~~i~ 72 (254)
T PRK12746 1 MKNLDGKVALVTGASRGIGRAIAMRLANDGA-------LVAIHYGRN-KQAADETIREIESNGGKAFLIEADLNSIDGVK 72 (254)
T ss_pred CCCCCCCEEEEeCCCchHHHHHHHHHHHCCC-------EEEEEcCCC-HHHHHHHHHHHHhcCCcEEEEEcCcCCHHHHH
Confidence 543 347899999999999999999998875 666643222 12222222222211 01 1123444433333
Q ss_pred HHhC-------------CCcEEEEecCCCCCCC---CCh---hHHHhhhHHHHHHHHHHHHhhcCCCcEEEEEeCChhhH
Q 019990 77 EACK-------------DVNIAVMVGGFPRKEG---MER---KDVMSKNVSIYKAQASALEKHAAPNCKVLVVANPANTN 137 (332)
Q Consensus 77 ~a~~-------------~aDiVi~~ag~~~~~~---~~~---~~~~~~N~~~~~~i~~~i~~~~~~~~~viv~snp~~~~ 137 (332)
++++ +.|+|||+||...... .+. ...++.|+.....+++.+.++.....+++++|+....
T Consensus 73 ~~~~~~~~~~~~~~~~~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~v~~sS~~~~- 151 (254)
T PRK12746 73 KLVEQLKNELQIRVGTSEIDILVNNAGIGTQGTIENTTEEIFDEIMAVNIKAPFFLIQQTLPLLRAEGRVINISSAEVR- 151 (254)
T ss_pred HHHHHHHHHhccccCCCCccEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHhhcCCEEEEECCHHhc-
Confidence 3333 5899999998743211 122 2345678888777777777653223466666653210
Q ss_pred HHHHHHHCCCCCCCcEEEeecccHHHHHHHHHHHcC
Q 019990 138 ALILKEFAPSIPAKNITCLTRLDHNRAMGQISERLK 173 (332)
Q Consensus 138 ~~~~~~~~~~~~~~~i~~~t~l~~~r~~~~~a~~~~ 173 (332)
.+.+....|+.++.....+...+++.++
T Consensus 152 --------~~~~~~~~Y~~sK~a~~~~~~~~~~~~~ 179 (254)
T PRK12746 152 --------LGFTGSIAYGLSKGALNTMTLPLAKHLG 179 (254)
T ss_pred --------CCCCCCcchHhhHHHHHHHHHHHHHHHh
Confidence 1233334578888877777777777654
|
|
| >PRK07890 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=98.62 E-value=2e-07 Score=83.35 Aligned_cols=166 Identities=16% Similarity=0.094 Sum_probs=95.1
Q ss_pred CCCCCcEEEEEcCCChhHHHHHHHHHhcccCCCCCCeEEEEEecccchhhhhhhHhhhhhhc--c-CCccceEEeCCHHH
Q 019990 1 MAKNPLRVLVTGAAGQIGYALVPMIARGIMLGPDQPVILHMLDIEPAAEALNGVKMELIDAA--F-PLLKGVVATTDVVE 77 (332)
Q Consensus 1 m~~~~~kI~VtGaaG~IGs~l~~~L~~~~~~~~~~~~~i~l~D~~~~~~~~~~~~~dl~~~~--~-~~~~~v~~~~~~~~ 77 (332)
|-...++|+||||+|+||++++..|++.|. +|.+++++. +.+.....++.... . ....|++...++..
T Consensus 1 ~~l~~k~vlItGa~~~IG~~la~~l~~~G~-------~V~~~~r~~--~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~ 71 (258)
T PRK07890 1 MLLKGKVVVVSGVGPGLGRTLAVRAARAGA-------DVVLAARTA--ERLDEVAAEIDDLGRRALAVPTDITDEDQCAN 71 (258)
T ss_pred CccCCCEEEEECCCCcHHHHHHHHHHHcCC-------EEEEEeCCH--HHHHHHHHHHHHhCCceEEEecCCCCHHHHHH
Confidence 445668899999999999999999999886 899999754 22332223332111 0 11234433333322
Q ss_pred H-------hCCCcEEEEecCCCCC--C--CCCh---hHHHhhhHHHHHHHHHHHHhhcC-CCcEEEEEeCChhhHHHHHH
Q 019990 78 A-------CKDVNIAVMVGGFPRK--E--GMER---KDVMSKNVSIYKAQASALEKHAA-PNCKVLVVANPANTNALILK 142 (332)
Q Consensus 78 a-------~~~aDiVi~~ag~~~~--~--~~~~---~~~~~~N~~~~~~i~~~i~~~~~-~~~~viv~snp~~~~~~~~~ 142 (332)
+ +...|+|||.||.... + ..+. ...+..|+.....+.+++..+-. ...++|++|+...
T Consensus 72 ~~~~~~~~~g~~d~vi~~ag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~ii~~sS~~~------- 144 (258)
T PRK07890 72 LVALALERFGRVDALVNNAFRVPSMKPLADADFAHWRAVIELNVLGTLRLTQAFTPALAESGGSIVMINSMVL------- 144 (258)
T ss_pred HHHHHHHHcCCccEEEECCccCCCCCCcccCCHHHHHHHHHhhhHHHHHHHHHHHHHHHhCCCEEEEEechhh-------
Confidence 2 2467999999986321 1 1222 23466787777777777765321 1236666665321
Q ss_pred HHCCCCCCCcEEEeecccHHHHHHHHHHHc---CCCCCCeeeeEE
Q 019990 143 EFAPSIPAKNITCLTRLDHNRAMGQISERL---KVHVSDVKNVII 184 (332)
Q Consensus 143 ~~~~~~~~~~i~~~t~l~~~r~~~~~a~~~---~v~~~~v~~~~V 184 (332)
. .+.+....|+.++.....+...+++.+ ++....+++..+
T Consensus 145 ~--~~~~~~~~Y~~sK~a~~~l~~~~a~~~~~~~i~v~~v~pg~v 187 (258)
T PRK07890 145 R--HSQPKYGAYKMAKGALLAASQSLATELGPQGIRVNSVAPGYI 187 (258)
T ss_pred c--cCCCCcchhHHHHHHHHHHHHHHHHHHhhcCcEEEEEeCCcc
Confidence 1 123334456777776666777777654 444444443333
|
|
| >PRK07774 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=98.62 E-value=2.5e-07 Score=82.21 Aligned_cols=156 Identities=19% Similarity=0.153 Sum_probs=91.7
Q ss_pred CCCcEEEEEcCCChhHHHHHHHHHhcccCCCCCCeEEEEEecccchhhhhhhHhhhhhhc--c-CCccceEEeCCHHHH-
Q 019990 3 KNPLRVLVTGAAGQIGYALVPMIARGIMLGPDQPVILHMLDIEPAAEALNGVKMELIDAA--F-PLLKGVVATTDVVEA- 78 (332)
Q Consensus 3 ~~~~kI~VtGaaG~IGs~l~~~L~~~~~~~~~~~~~i~l~D~~~~~~~~~~~~~dl~~~~--~-~~~~~v~~~~~~~~a- 78 (332)
.+.++++||||+|+||++++..|++.|. ++++++++.. .......++.+.. . ....|++...++.+.
T Consensus 4 ~~~k~vlItGasg~iG~~la~~l~~~g~-------~vi~~~r~~~--~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~ 74 (250)
T PRK07774 4 FDDKVAIVTGAAGGIGQAYAEALAREGA-------SVVVADINAE--GAERVAKQIVADGGTAIAVQVDVSDPDSAKAMA 74 (250)
T ss_pred cCCCEEEEECCCchHHHHHHHHHHHCCC-------EEEEEeCCHH--HHHHHHHHHHhcCCcEEEEEcCCCCHHHHHHHH
Confidence 3567899999999999999999998875 8999997532 2222222222110 0 112344333333222
Q ss_pred ------hCCCcEEEEecCCCCC------CCCCh---hHHHhhhHHHHHHHHHHHHhhc--CCCcEEEEEeCChhhHHHHH
Q 019990 79 ------CKDVNIAVMVGGFPRK------EGMER---KDVMSKNVSIYKAQASALEKHA--APNCKVLVVANPANTNALIL 141 (332)
Q Consensus 79 ------~~~aDiVi~~ag~~~~------~~~~~---~~~~~~N~~~~~~i~~~i~~~~--~~~~~viv~snp~~~~~~~~ 141 (332)
+...|+|||+||.... ...+. .+.+..|......+.+++..+. .+..+++++|+-.
T Consensus 75 ~~~~~~~~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~iv~~sS~~------- 147 (250)
T PRK07774 75 DATVSAFGGIDYLVNNAAIYGGMKLDLLITVPWDYYKKFMSVNLDGALVCTRAVYKHMAKRGGGAIVNQSSTA------- 147 (250)
T ss_pred HHHHHHhCCCCEEEECCCCcCCCCCCChhhCCHHHHHHHHhhhhHHHHHHHHHHHHHHHHhCCcEEEEEeccc-------
Confidence 2368999999986321 11121 2345678777777666666542 1234667666421
Q ss_pred HHHCCCCCCCcEEEeecccHHHHHHHHHHHcCCCCCCeee
Q 019990 142 KEFAPSIPAKNITCLTRLDHNRAMGQISERLKVHVSDVKN 181 (332)
Q Consensus 142 ~~~~~~~~~~~i~~~t~l~~~r~~~~~a~~~~v~~~~v~~ 181 (332)
.+++...|+.++.....+...+++.+. ...++.
T Consensus 148 -----~~~~~~~Y~~sK~a~~~~~~~l~~~~~--~~~i~v 180 (250)
T PRK07774 148 -----AWLYSNFYGLAKVGLNGLTQQLARELG--GMNIRV 180 (250)
T ss_pred -----ccCCccccHHHHHHHHHHHHHHHHHhC--ccCeEE
Confidence 123334578888877888888887764 234554
|
|
| >PF04321 RmlD_sub_bind: RmlD substrate binding domain; InterPro: IPR005913 dTDP-4-dehydrorhamnose reductase (1 | Back alignment and domain information |
|---|
Probab=98.61 E-value=1.3e-08 Score=93.01 Aligned_cols=159 Identities=14% Similarity=0.181 Sum_probs=90.5
Q ss_pred cEEEEEcCCChhHHHHHHHHHhcccCCCCCCeEEEEEecccchhhhhhhHhhhhhhccCCccceEEeCCHHHHhC--CCc
Q 019990 6 LRVLVTGAAGQIGYALVPMIARGIMLGPDQPVILHMLDIEPAAEALNGVKMELIDAAFPLLKGVVATTDVVEACK--DVN 83 (332)
Q Consensus 6 ~kI~VtGaaG~IGs~l~~~L~~~~~~~~~~~~~i~l~D~~~~~~~~~~~~~dl~~~~~~~~~~v~~~~~~~~a~~--~aD 83 (332)
|||+||||+|++|+++...|...++ ++..++... .|+.+. ..+.+.++ +.|
T Consensus 1 MriLI~GasG~lG~~l~~~l~~~~~-------~v~~~~r~~---------~dl~d~-----------~~~~~~~~~~~pd 53 (286)
T PF04321_consen 1 MRILITGASGFLGSALARALKERGY-------EVIATSRSD---------LDLTDP-----------EAVAKLLEAFKPD 53 (286)
T ss_dssp EEEEEETTTSHHHHHHHHHHTTTSE-------EEEEESTTC---------S-TTSH-----------HHHHHHHHHH--S
T ss_pred CEEEEECCCCHHHHHHHHHHhhCCC-------EEEEeCchh---------cCCCCH-----------HHHHHHHHHhCCC
Confidence 6899999999999999999988765 777776531 122211 11222222 589
Q ss_pred EEEEecCCCCCC--CCChhHHHhhhHHHHHHHHHHHHhhcCCCcEEEEEeCC-hh-hH-HHHHHHHCCCCCCCcEEEeec
Q 019990 84 IAVMVGGFPRKE--GMERKDVMSKNVSIYKAQASALEKHAAPNCKVLVVANP-AN-TN-ALILKEFAPSIPAKNITCLTR 158 (332)
Q Consensus 84 iVi~~ag~~~~~--~~~~~~~~~~N~~~~~~i~~~i~~~~~~~~~viv~snp-~~-~~-~~~~~~~~~~~~~~~i~~~t~ 158 (332)
+|||+|+..... +.....-...|+.....+++.+.+.+ .++|.+|+- |- -. .....+. ...+|...||-++
T Consensus 54 ~Vin~aa~~~~~~ce~~p~~a~~iN~~~~~~la~~~~~~~---~~li~~STd~VFdG~~~~~y~E~-d~~~P~~~YG~~K 129 (286)
T PF04321_consen 54 VVINCAAYTNVDACEKNPEEAYAINVDATKNLAEACKERG---ARLIHISTDYVFDGDKGGPYTED-DPPNPLNVYGRSK 129 (286)
T ss_dssp EEEE------HHHHHHSHHHHHHHHTHHHHHHHHHHHHCT----EEEEEEEGGGS-SSTSSSB-TT-S----SSHHHHHH
T ss_pred eEeccceeecHHhhhhChhhhHHHhhHHHHHHHHHHHHcC---CcEEEeeccEEEcCCcccccccC-CCCCCCCHHHHHH
Confidence 999999874311 12234466789999999999999864 566666641 20 00 0001111 1233445788899
Q ss_pred ccHHHHHHHHHHHcCCCCCCeeeeEEEecCCCceeecccCc
Q 019990 159 LDHNRAMGQISERLKVHVSDVKNVIIWGNHSSTQYPDVNHA 199 (332)
Q Consensus 159 l~~~r~~~~~a~~~~v~~~~v~~~~V~G~hg~~~v~~~s~~ 199 (332)
+..+++.... .-+...+|...+||+++.+.+-.+-+.
T Consensus 130 ~~~E~~v~~~----~~~~~IlR~~~~~g~~~~~~~~~~~~~ 166 (286)
T PF04321_consen 130 LEGEQAVRAA----CPNALILRTSWVYGPSGRNFLRWLLRR 166 (286)
T ss_dssp HHHHHHHHHH-----SSEEEEEE-SEESSSSSSHHHHHHHH
T ss_pred HHHHHHHHHh----cCCEEEEecceecccCCCchhhhHHHH
Confidence 8887765442 225666888778999776655444333
|
1.1.133 from EC) catalyzes the last of 4 steps in making dTDP-rhamnose, a precursor of LPS molecules such as core antigen and O-antigen. |
| >PRK12429 3-hydroxybutyrate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=98.61 E-value=2.5e-07 Score=82.58 Aligned_cols=156 Identities=15% Similarity=0.114 Sum_probs=87.0
Q ss_pred CCcEEEEEcCCChhHHHHHHHHHhcccCCCCCCeEEEEEecccchhhhhhhHhhhhhh--cc-CCccceEEeCCHHHHh-
Q 019990 4 NPLRVLVTGAAGQIGYALVPMIARGIMLGPDQPVILHMLDIEPAAEALNGVKMELIDA--AF-PLLKGVVATTDVVEAC- 79 (332)
Q Consensus 4 ~~~kI~VtGaaG~IGs~l~~~L~~~~~~~~~~~~~i~l~D~~~~~~~~~~~~~dl~~~--~~-~~~~~v~~~~~~~~a~- 79 (332)
..++|+||||+|++|++++..|++.|. ++++++++.. .+.....++... .. .+..|+....++.+++
T Consensus 3 ~~~~vlItG~sg~iG~~la~~l~~~g~-------~v~~~~r~~~--~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~ 73 (258)
T PRK12429 3 KGKVALVTGAASGIGLEIALALAKEGA-------KVVIADLNDE--AAAAAAEALQKAGGKAIGVAMDVTDEEAINAGID 73 (258)
T ss_pred CCCEEEEECCCchHHHHHHHHHHHCCC-------eEEEEeCCHH--HHHHHHHHHHhcCCcEEEEEcCCCCHHHHHHHHH
Confidence 457899999999999999999998875 8999988642 233222333211 11 1123444333333333
Q ss_pred ------CCCcEEEEecCCCCCC---CCCh---hHHHhhhHHH----HHHHHHHHHhhcCCCcEEEEEeCChhhHHHHHHH
Q 019990 80 ------KDVNIAVMVGGFPRKE---GMER---KDVMSKNVSI----YKAQASALEKHAAPNCKVLVVANPANTNALILKE 143 (332)
Q Consensus 80 ------~~aDiVi~~ag~~~~~---~~~~---~~~~~~N~~~----~~~i~~~i~~~~~~~~~viv~snp~~~~~~~~~~ 143 (332)
.+.|+|||.||..... ..+. .+.+..|+.. ++.+.+.+++.. ..+++++|+....
T Consensus 74 ~~~~~~~~~d~vi~~a~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~--~~~iv~iss~~~~------- 144 (258)
T PRK12429 74 YAVETFGGVDILVNNAGIQHVAPIEDFPTEKWKKMIAIMLDGAFLTTKAALPIMKAQG--GGRIINMASVHGL------- 144 (258)
T ss_pred HHHHHcCCCCEEEECCCCCCCCChhhCCHHHHHHHHhhcchhhHHHHHHHHHHHHhcC--CeEEEEEcchhhc-------
Confidence 3689999999864221 1121 1244566665 555566665543 3366666653211
Q ss_pred HCCCCCCCcEEEeecccHHHHHHHHHHHcCCCCCCeee
Q 019990 144 FAPSIPAKNITCLTRLDHNRAMGQISERLKVHVSDVKN 181 (332)
Q Consensus 144 ~~~~~~~~~i~~~t~l~~~r~~~~~a~~~~v~~~~v~~ 181 (332)
.+.+....|+.++.....+.+.+++.+. +..++.
T Consensus 145 --~~~~~~~~y~~~k~a~~~~~~~l~~~~~--~~~i~v 178 (258)
T PRK12429 145 --VGSAGKAAYVSAKHGLIGLTKVVALEGA--THGVTV 178 (258)
T ss_pred --cCCCCcchhHHHHHHHHHHHHHHHHHhc--ccCeEE
Confidence 1223333456666555666666666542 344553
|
|
| >PRK06128 oxidoreductase; Provisional | Back alignment and domain information |
|---|
Probab=98.60 E-value=3.8e-07 Score=83.82 Aligned_cols=153 Identities=14% Similarity=0.099 Sum_probs=89.8
Q ss_pred CcEEEEEcCCChhHHHHHHHHHhcccCCCCCCeEEEEEecccchhhhhhhHhhhhhhc---cCCccceEEeCCHHHH---
Q 019990 5 PLRVLVTGAAGQIGYALVPMIARGIMLGPDQPVILHMLDIEPAAEALNGVKMELIDAA---FPLLKGVVATTDVVEA--- 78 (332)
Q Consensus 5 ~~kI~VtGaaG~IGs~l~~~L~~~~~~~~~~~~~i~l~D~~~~~~~~~~~~~dl~~~~---~~~~~~v~~~~~~~~a--- 78 (332)
.++|+||||+|+||++++..|++.|. +|++.++.............+.... ..+..|+....++.++
T Consensus 55 ~k~vlITGas~gIG~~~a~~l~~~G~-------~V~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~v~~~~~~ 127 (300)
T PRK06128 55 GRKALITGADSGIGRATAIAFAREGA-------DIALNYLPEEEQDAAEVVQLIQAEGRKAVALPGDLKDEAFCRQLVER 127 (300)
T ss_pred CCEEEEecCCCcHHHHHHHHHHHcCC-------EEEEEeCCcchHHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHH
Confidence 46899999999999999999998875 7777665322111222222222111 0112344433333332
Q ss_pred ----hCCCcEEEEecCCCC--CC--CCCh---hHHHhhhHHHHHHHHHHHHhhcCCCcEEEEEeCChhhHHHHHHHHCCC
Q 019990 79 ----CKDVNIAVMVGGFPR--KE--GMER---KDVMSKNVSIYKAQASALEKHAAPNCKVLVVANPANTNALILKEFAPS 147 (332)
Q Consensus 79 ----~~~aDiVi~~ag~~~--~~--~~~~---~~~~~~N~~~~~~i~~~i~~~~~~~~~viv~snp~~~~~~~~~~~~~~ 147 (332)
+...|++||.||... .+ ..+. ...++.|+.....+++.+..+-.+..++|++|+.... .+
T Consensus 128 ~~~~~g~iD~lV~nAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~iv~~sS~~~~---------~~ 198 (300)
T PRK06128 128 AVKELGGLDILVNIAGKQTAVKDIADITTEQFDATFKTNVYAMFWLCKAAIPHLPPGASIINTGSIQSY---------QP 198 (300)
T ss_pred HHHHhCCCCEEEECCcccCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHhcCcCCEEEEECCcccc---------CC
Confidence 336899999998632 11 1122 2357788888888888887653234566666653211 11
Q ss_pred CCCCcEEEeecccHHHHHHHHHHHcC
Q 019990 148 IPAKNITCLTRLDHNRAMGQISERLK 173 (332)
Q Consensus 148 ~~~~~i~~~t~l~~~r~~~~~a~~~~ 173 (332)
.+..-.|+.+|.....+.+.+++.+.
T Consensus 199 ~~~~~~Y~asK~a~~~~~~~la~el~ 224 (300)
T PRK06128 199 SPTLLDYASTKAAIVAFTKALAKQVA 224 (300)
T ss_pred CCCchhHHHHHHHHHHHHHHHHHHhh
Confidence 12222467788877888888887753
|
|
| >PRK08278 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=98.58 E-value=1e-06 Score=79.76 Aligned_cols=164 Identities=18% Similarity=0.188 Sum_probs=96.8
Q ss_pred CCCCCcEEEEEcCCChhHHHHHHHHHhcccCCCCCCeEEEEEecccchh-----hhhhhHhhhhhhc--c-CCccceEEe
Q 019990 1 MAKNPLRVLVTGAAGQIGYALVPMIARGIMLGPDQPVILHMLDIEPAAE-----ALNGVKMELIDAA--F-PLLKGVVAT 72 (332)
Q Consensus 1 m~~~~~kI~VtGaaG~IGs~l~~~L~~~~~~~~~~~~~i~l~D~~~~~~-----~~~~~~~dl~~~~--~-~~~~~v~~~ 72 (332)
|+.++++++||||+|+||++++..|++.|. +|++++++.... .+.....++.... . .+..|++..
T Consensus 2 ~~~~~k~vlItGas~gIG~~ia~~l~~~G~-------~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~D~~~~ 74 (273)
T PRK08278 2 MSLSGKTLFITGASRGIGLAIALRAARDGA-------NIVIAAKTAEPHPKLPGTIHTAAEEIEAAGGQALPLVGDVRDE 74 (273)
T ss_pred CCCCCCEEEEECCCchHHHHHHHHHHHCCC-------EEEEEecccccccchhhHHHHHHHHHHhcCCceEEEEecCCCH
Confidence 334567899999999999999999998875 788888754210 0111122222110 0 112344433
Q ss_pred CCHHHHh-------CCCcEEEEecCCCCC---CCCChh---HHHhhhHHHHHHHHHHHHhhc--CCCcEEEEEeCChhhH
Q 019990 73 TDVVEAC-------KDVNIAVMVGGFPRK---EGMERK---DVMSKNVSIYKAQASALEKHA--APNCKVLVVANPANTN 137 (332)
Q Consensus 73 ~~~~~a~-------~~aDiVi~~ag~~~~---~~~~~~---~~~~~N~~~~~~i~~~i~~~~--~~~~~viv~snp~~~~ 137 (332)
.++.+.+ ...|++||.||.... ...+.. ..++.|+.....+.+.+..+- ...+.+++++.+...
T Consensus 75 ~~i~~~~~~~~~~~g~id~li~~ag~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~~~~~~~~~~g~iv~iss~~~~- 153 (273)
T PRK08278 75 DQVAAAVAKAVERFGGIDICVNNASAINLTGTEDTPMKRFDLMQQINVRGTFLVSQACLPHLKKSENPHILTLSPPLNL- 153 (273)
T ss_pred HHHHHHHHHHHHHhCCCCEEEECCCCcCCCCcccCCHHHHHHHHHHhchHHHHHHHHHHHHHHhcCCCEEEEECCchhc-
Confidence 3333333 268999999986321 112222 245677776766666665431 123566666653211
Q ss_pred HHHHHHHCCC-CCCCcEEEeecccHHHHHHHHHHHcCCCCCCeee
Q 019990 138 ALILKEFAPS-IPAKNITCLTRLDHNRAMGQISERLKVHVSDVKN 181 (332)
Q Consensus 138 ~~~~~~~~~~-~~~~~i~~~t~l~~~r~~~~~a~~~~v~~~~v~~ 181 (332)
. +. ++....|+.+|...+++...+++.++ +..|+.
T Consensus 154 -----~--~~~~~~~~~Y~~sK~a~~~~~~~la~el~--~~~I~v 189 (273)
T PRK08278 154 -----D--PKWFAPHTAYTMAKYGMSLCTLGLAEEFR--DDGIAV 189 (273)
T ss_pred -----c--ccccCCcchhHHHHHHHHHHHHHHHHHhh--hcCcEE
Confidence 0 11 24445789999999999999988876 345664
|
|
| >PRK05717 oxidoreductase; Validated | Back alignment and domain information |
|---|
Probab=98.58 E-value=3.1e-07 Score=82.14 Aligned_cols=151 Identities=16% Similarity=0.111 Sum_probs=90.6
Q ss_pred CcEEEEEcCCChhHHHHHHHHHhcccCCCCCCeEEEEEecccchhhhhhhHhhhhhhccCCccceEEeCCHHHH------
Q 019990 5 PLRVLVTGAAGQIGYALVPMIARGIMLGPDQPVILHMLDIEPAAEALNGVKMELIDAAFPLLKGVVATTDVVEA------ 78 (332)
Q Consensus 5 ~~kI~VtGaaG~IGs~l~~~L~~~~~~~~~~~~~i~l~D~~~~~~~~~~~~~dl~~~~~~~~~~v~~~~~~~~a------ 78 (332)
.++|+||||+|+||++++..|++.|. ++.++|++.. .......++.........|+....++.++
T Consensus 10 ~k~vlItG~sg~IG~~~a~~l~~~g~-------~v~~~~~~~~--~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~ 80 (255)
T PRK05717 10 GRVALVTGAARGIGLGIAAWLIAEGW-------QVVLADLDRE--RGSKVAKALGENAWFIAMDVADEAQVAAGVAEVLG 80 (255)
T ss_pred CCEEEEeCCcchHHHHHHHHHHHcCC-------EEEEEcCCHH--HHHHHHHHcCCceEEEEccCCCHHHHHHHHHHHHH
Confidence 46899999999999999999998875 7899987531 12111111111000112344433333222
Q ss_pred -hCCCcEEEEecCCCCCC-----CCCh---hHHHhhhHHHHHHHHHHHHhhc-CCCcEEEEEeCChhhHHHHHHHHCCCC
Q 019990 79 -CKDVNIAVMVGGFPRKE-----GMER---KDVMSKNVSIYKAQASALEKHA-APNCKVLVVANPANTNALILKEFAPSI 148 (332)
Q Consensus 79 -~~~aDiVi~~ag~~~~~-----~~~~---~~~~~~N~~~~~~i~~~i~~~~-~~~~~viv~snp~~~~~~~~~~~~~~~ 148 (332)
+...|++||.||..... ..+. ...+..|+.....+.+++..+- .....+|++|+.... .+.
T Consensus 81 ~~g~id~li~~ag~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~g~ii~~sS~~~~---------~~~ 151 (255)
T PRK05717 81 QFGRLDALVCNAAIADPHNTTLESLSLAHWNRVLAVNLTGPMLLAKHCAPYLRAHNGAIVNLASTRAR---------QSE 151 (255)
T ss_pred HhCCCCEEEECCCcccCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCcEEEEEcchhhc---------CCC
Confidence 23579999999874321 1121 2456788888888888876531 123466666653211 122
Q ss_pred CCCcEEEeecccHHHHHHHHHHHcC
Q 019990 149 PAKNITCLTRLDHNRAMGQISERLK 173 (332)
Q Consensus 149 ~~~~i~~~t~l~~~r~~~~~a~~~~ 173 (332)
+....|+.+|.....+...+++.++
T Consensus 152 ~~~~~Y~~sKaa~~~~~~~la~~~~ 176 (255)
T PRK05717 152 PDTEAYAASKGGLLALTHALAISLG 176 (255)
T ss_pred CCCcchHHHHHHHHHHHHHHHHHhc
Confidence 2233678888888888888888876
|
|
| >PRK05875 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=98.56 E-value=8.5e-07 Score=80.20 Aligned_cols=164 Identities=14% Similarity=0.067 Sum_probs=95.2
Q ss_pred CCCcEEEEEcCCChhHHHHHHHHHhcccCCCCCCeEEEEEecccchhhhhhhHhhhhhh----cc-CCccceEEeCCHHH
Q 019990 3 KNPLRVLVTGAAGQIGYALVPMIARGIMLGPDQPVILHMLDIEPAAEALNGVKMELIDA----AF-PLLKGVVATTDVVE 77 (332)
Q Consensus 3 ~~~~kI~VtGaaG~IGs~l~~~L~~~~~~~~~~~~~i~l~D~~~~~~~~~~~~~dl~~~----~~-~~~~~v~~~~~~~~ 77 (332)
.+.++|+||||+|+||++++..|++.|. +|.+++++. +.+.....++... .. ....|+....++.+
T Consensus 5 ~~~k~vlItGasg~IG~~la~~l~~~G~-------~V~~~~r~~--~~~~~~~~~l~~~~~~~~~~~~~~Dl~~~~~~~~ 75 (276)
T PRK05875 5 FQDRTYLVTGGGSGIGKGVAAGLVAAGA-------AVMIVGRNP--DKLAAAAEEIEALKGAGAVRYEPADVTDEDQVAR 75 (276)
T ss_pred CCCCEEEEECCCcHHHHHHHHHHHHCCC-------eEEEEeCCH--HHHHHHHHHHHhccCCCceEEEEcCCCCHHHHHH
Confidence 3458999999999999999999999886 789998753 2232222232211 00 01124433333333
Q ss_pred HhC-------CCcEEEEecCCCCC--C--CCCh---hHHHhhhHHHHHHHHHHHHhhc--CCCcEEEEEeCChhhHHHHH
Q 019990 78 ACK-------DVNIAVMVGGFPRK--E--GMER---KDVMSKNVSIYKAQASALEKHA--APNCKVLVVANPANTNALIL 141 (332)
Q Consensus 78 a~~-------~aDiVi~~ag~~~~--~--~~~~---~~~~~~N~~~~~~i~~~i~~~~--~~~~~viv~snp~~~~~~~~ 141 (332)
.++ ..|++||.||.... + ..+. ...+..|......+++++.++. ....+++++|+...
T Consensus 76 ~~~~~~~~~~~~d~li~~ag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~g~iv~~sS~~~------ 149 (276)
T PRK05875 76 AVDAATAWHGRLHGVVHCAGGSETIGPITQIDSDAWRRTVDLNVNGTMYVLKHAARELVRGGGGSFVGISSIAA------ 149 (276)
T ss_pred HHHHHHHHcCCCCEEEECCCcccCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCcEEEEEechhh------
Confidence 333 68999999985321 1 1222 2245567777766666554432 12346666665321
Q ss_pred HHHCCCCCCCcEEEeecccHHHHHHHHHHHcCCCCCCeeeeEEEec
Q 019990 142 KEFAPSIPAKNITCLTRLDHNRAMGQISERLKVHVSDVKNVIIWGN 187 (332)
Q Consensus 142 ~~~~~~~~~~~i~~~t~l~~~r~~~~~a~~~~v~~~~v~~~~V~G~ 187 (332)
. .+.++...|+.++...+.+...+++.++ +..++.. ++.+
T Consensus 150 -~--~~~~~~~~Y~~sK~a~~~~~~~~~~~~~--~~~i~v~-~i~P 189 (276)
T PRK05875 150 -S--NTHRWFGAYGVTKSAVDHLMKLAADELG--PSWVRVN-SIRP 189 (276)
T ss_pred -c--CCCCCCcchHHHHHHHHHHHHHHHHHhc--ccCeEEE-EEec
Confidence 0 1223334678888888888888887765 4567743 3444
|
|
| >PRK12829 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=98.56 E-value=5.3e-07 Score=80.78 Aligned_cols=151 Identities=19% Similarity=0.206 Sum_probs=84.7
Q ss_pred CCcEEEEEcCCChhHHHHHHHHHhcccCCCCCCeEEEEEecccchhhhhhhHhhhhhhc-cCCccceEEeCCHHHH----
Q 019990 4 NPLRVLVTGAAGQIGYALVPMIARGIMLGPDQPVILHMLDIEPAAEALNGVKMELIDAA-FPLLKGVVATTDVVEA---- 78 (332)
Q Consensus 4 ~~~kI~VtGaaG~IGs~l~~~L~~~~~~~~~~~~~i~l~D~~~~~~~~~~~~~dl~~~~-~~~~~~v~~~~~~~~a---- 78 (332)
+.++++||||+|+||++++..|++.+. +|++++++.. .......+..... .....|+....++.++
T Consensus 10 ~~~~vlItGa~g~iG~~~a~~L~~~g~-------~V~~~~r~~~--~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~ 80 (264)
T PRK12829 10 DGLRVLVTGGASGIGRAIAEAFAEAGA-------RVHVCDVSEA--ALAATAARLPGAKVTATVADVADPAQVERVFDTA 80 (264)
T ss_pred CCCEEEEeCCCCcHHHHHHHHHHHCCC-------EEEEEeCCHH--HHHHHHHHHhcCceEEEEccCCCHHHHHHHHHHH
Confidence 457999999999999999999998876 7899987531 2221111111110 0011233332233222
Q ss_pred ---hCCCcEEEEecCCCCCC----CCCh---hHHHhhhHHHHHHHHHHHHhhc--CCC-cEEEEEeCChhhHHHHHHHHC
Q 019990 79 ---CKDVNIAVMVGGFPRKE----GMER---KDVMSKNVSIYKAQASALEKHA--APN-CKVLVVANPANTNALILKEFA 145 (332)
Q Consensus 79 ---~~~aDiVi~~ag~~~~~----~~~~---~~~~~~N~~~~~~i~~~i~~~~--~~~-~~viv~snp~~~~~~~~~~~~ 145 (332)
+.++|+|||.+|..... ..+. ...++.|......+.+.+...- ... .++++.|.....
T Consensus 81 ~~~~~~~d~vi~~ag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~vv~~ss~~~~--------- 151 (264)
T PRK12829 81 VERFGGLDVLVNNAGIAGPTGGIDEITPEQWEQTLAVNLNGQFYFARAAVPLLKASGHGGVIIALSSVAGR--------- 151 (264)
T ss_pred HHHhCCCCEEEECCCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhCCCCeEEEEecccccc---------
Confidence 24789999999864211 1122 2345667777666666553321 112 344554432110
Q ss_pred CCCCCCcEEEeecccHHHHHHHHHHHc
Q 019990 146 PSIPAKNITCLTRLDHNRAMGQISERL 172 (332)
Q Consensus 146 ~~~~~~~i~~~t~l~~~r~~~~~a~~~ 172 (332)
.+++....|+.++.....+...+++.+
T Consensus 152 ~~~~~~~~y~~~K~a~~~~~~~l~~~~ 178 (264)
T PRK12829 152 LGYPGRTPYAASKWAVVGLVKSLAIEL 178 (264)
T ss_pred cCCCCCchhHHHHHHHHHHHHHHHHHH
Confidence 133444457777777777777777765
|
|
| >PRK12823 benD 1,6-dihydroxycyclohexa-2,4-diene-1-carboxylate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=98.56 E-value=3.8e-07 Score=81.67 Aligned_cols=145 Identities=16% Similarity=0.087 Sum_probs=82.8
Q ss_pred CcEEEEEcCCChhHHHHHHHHHhcccCCCCCCeEEEEEecccchhhhhhhHhhhhhhc--c-CCccceEEeCCHHHH---
Q 019990 5 PLRVLVTGAAGQIGYALVPMIARGIMLGPDQPVILHMLDIEPAAEALNGVKMELIDAA--F-PLLKGVVATTDVVEA--- 78 (332)
Q Consensus 5 ~~kI~VtGaaG~IGs~l~~~L~~~~~~~~~~~~~i~l~D~~~~~~~~~~~~~dl~~~~--~-~~~~~v~~~~~~~~a--- 78 (332)
.++++||||+|+||++++..|++.|. +|+++|++.. ......++.... . ....|+....++.+.
T Consensus 8 ~k~vlVtGas~gIG~~la~~l~~~G~-------~v~~~~r~~~---~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~ 77 (260)
T PRK12823 8 GKVVVVTGAAQGIGRGVALRAAAEGA-------RVVLVDRSEL---VHEVAAELRAAGGEALALTADLETYAGAQAAMAA 77 (260)
T ss_pred CCEEEEeCCCchHHHHHHHHHHHCCC-------EEEEEeCchH---HHHHHHHHHhcCCeEEEEEEeCCCHHHHHHHHHH
Confidence 46899999999999999999998885 7889987531 111222222110 0 111233332222222
Q ss_pred ----hCCCcEEEEecCCCC--CC--CCChh---HHHhhhHHHH----HHHHHHHHhhcCCCcEEEEEeCChhhHHHHHHH
Q 019990 79 ----CKDVNIAVMVGGFPR--KE--GMERK---DVMSKNVSIY----KAQASALEKHAAPNCKVLVVANPANTNALILKE 143 (332)
Q Consensus 79 ----~~~aDiVi~~ag~~~--~~--~~~~~---~~~~~N~~~~----~~i~~~i~~~~~~~~~viv~snp~~~~~~~~~~ 143 (332)
+...|++||.||... .+ ..+.. ..+..|+... +.+++.+++.+ ..+++++|+... +
T Consensus 78 ~~~~~~~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~--~g~iv~~sS~~~---~---- 148 (260)
T PRK12823 78 AVEAFGRIDVLINNVGGTIWAKPFEEYEEEQIEAEIRRSLFPTLWCCRAVLPHMLAQG--GGAIVNVSSIAT---R---- 148 (260)
T ss_pred HHHHcCCCeEEEECCccccCCCChhhCChHHHHHHHHHHhHHHHHHHHHHHHHHHhcC--CCeEEEEcCccc---c----
Confidence 236899999998531 11 12222 2345555433 45555555442 246666665321 0
Q ss_pred HCCCCCCCcEEEeecccHHHHHHHHHHHc
Q 019990 144 FAPSIPAKNITCLTRLDHNRAMGQISERL 172 (332)
Q Consensus 144 ~~~~~~~~~i~~~t~l~~~r~~~~~a~~~ 172 (332)
+ +....|+.+|.....+.+.+++.+
T Consensus 149 ---~-~~~~~Y~~sK~a~~~~~~~la~e~ 173 (260)
T PRK12823 149 ---G-INRVPYSAAKGGVNALTASLAFEY 173 (260)
T ss_pred ---C-CCCCccHHHHHHHHHHHHHHHHHh
Confidence 0 112257888888888888888876
|
|
| >COG4221 Short-chain alcohol dehydrogenase of unknown specificity [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.56 E-value=2.4e-06 Score=74.53 Aligned_cols=161 Identities=17% Similarity=0.172 Sum_probs=104.7
Q ss_pred CCC-CCcEEEEEcCCChhHHHHHHHHHhcccCCCCCCeEEEEEecccchhhhhhhHhhhhh-hccCCccceEEeCC----
Q 019990 1 MAK-NPLRVLVTGAAGQIGYALVPMIARGIMLGPDQPVILHMLDIEPAAEALNGVKMELID-AAFPLLKGVVATTD---- 74 (332)
Q Consensus 1 m~~-~~~kI~VtGaaG~IGs~l~~~L~~~~~~~~~~~~~i~l~D~~~~~~~~~~~~~dl~~-~~~~~~~~v~~~~~---- 74 (332)
|++ +.+-++||||++.||.+++..|.+.|. .++|..++. ++++....++.+ ...+...|+++..+
T Consensus 1 m~~~~~kv~lITGASSGiG~A~A~~l~~~G~-------~vvl~aRR~--drL~~la~~~~~~~~~~~~~DVtD~~~~~~~ 71 (246)
T COG4221 1 MTTLKGKVALITGASSGIGEATARALAEAGA-------KVVLAARRE--ERLEALADEIGAGAALALALDVTDRAAVEAA 71 (246)
T ss_pred CCCCCCcEEEEecCcchHHHHHHHHHHHCCC-------eEEEEeccH--HHHHHHHHhhccCceEEEeeccCCHHHHHHH
Confidence 443 345688999999999999999999986 899999875 567766666653 11223346655433
Q ss_pred ---HHHHhCCCcEEEEecCCCCCCC---CC---hhHHHhhhHHHHH----HHHHHHHhhcCCCcEEEEEeCChhhHHHHH
Q 019990 75 ---VVEACKDVNIAVMVGGFPRKEG---ME---RKDVMSKNVSIYK----AQASALEKHAAPNCKVLVVANPANTNALIL 141 (332)
Q Consensus 75 ---~~~a~~~aDiVi~~ag~~~~~~---~~---~~~~~~~N~~~~~----~i~~~i~~~~~~~~~viv~snp~~~~~~~~ 141 (332)
+.+.+...|++|+-||...... .+ -..+++.|+.++. .++..+.+. ..+.+|+.++-..
T Consensus 72 i~~~~~~~g~iDiLvNNAGl~~g~~~~~~~~~dw~~Mid~Ni~G~l~~~~avLP~m~~r--~~G~IiN~~SiAG------ 143 (246)
T COG4221 72 IEALPEEFGRIDILVNNAGLALGDPLDEADLDDWDRMIDTNVKGLLNGTRAVLPGMVER--KSGHIINLGSIAG------ 143 (246)
T ss_pred HHHHHHhhCcccEEEecCCCCcCChhhhCCHHHHHHHHHHHHHHHHHHHHHhhhHHHhc--CCceEEEeccccc------
Confidence 2333557999999999743211 11 1346788887664 445555554 2457787776322
Q ss_pred HHHCCCCCCCcEEEeecccHHHHHHHHHHHcCCCCCCeeeeE
Q 019990 142 KEFAPSIPAKNITCLTRLDHNRAMGQISERLKVHVSDVKNVI 183 (332)
Q Consensus 142 ~~~~~~~~~~~i~~~t~l~~~r~~~~~a~~~~v~~~~v~~~~ 183 (332)
+ ..||...+|+.||-.-.-|...+.+.+. .+.||...
T Consensus 144 -~--~~y~~~~vY~ATK~aV~~fs~~LR~e~~--g~~IRVt~ 180 (246)
T COG4221 144 -R--YPYPGGAVYGATKAAVRAFSLGLRQELA--GTGIRVTV 180 (246)
T ss_pred -c--ccCCCCccchhhHHHHHHHHHHHHHHhc--CCCeeEEE
Confidence 1 2477778999998766666555544432 46777654
|
|
| >PRK12937 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=98.55 E-value=7.6e-07 Score=78.83 Aligned_cols=162 Identities=13% Similarity=0.139 Sum_probs=93.6
Q ss_pred CCCCCcEEEEEcCCChhHHHHHHHHHhcccCCCCCCeEEEEEecccchhhhhhhHhhhhhhc--c-CCccceEEeCCHHH
Q 019990 1 MAKNPLRVLVTGAAGQIGYALVPMIARGIMLGPDQPVILHMLDIEPAAEALNGVKMELIDAA--F-PLLKGVVATTDVVE 77 (332)
Q Consensus 1 m~~~~~kI~VtGaaG~IGs~l~~~L~~~~~~~~~~~~~i~l~D~~~~~~~~~~~~~dl~~~~--~-~~~~~v~~~~~~~~ 77 (332)
|..+.++|+||||+|+||++++..|++.|. +++++..+.. ........++.... . ....|+....++.+
T Consensus 1 ~~~~~~~vlItG~~~~iG~~la~~l~~~g~-------~v~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~ 72 (245)
T PRK12937 1 MTLSNKVAIVTGASRGIGAAIARRLAADGF-------AVAVNYAGSA-AAADELVAEIEAAGGRAIAVQADVADAAAVTR 72 (245)
T ss_pred CCCCCCEEEEeCCCchHHHHHHHHHHHCCC-------EEEEecCCCH-HHHHHHHHHHHhcCCeEEEEECCCCCHHHHHH
Confidence 666778999999999999999999999885 6766665321 12222222222111 0 11124433333444
Q ss_pred HhC-------CCcEEEEecCCCCCC---CCCh---hHHHhhhHHHHHHHHHHHHhhcCCCcEEEEEeCChhhHHHHHHHH
Q 019990 78 ACK-------DVNIAVMVGGFPRKE---GMER---KDVMSKNVSIYKAQASALEKHAAPNCKVLVVANPANTNALILKEF 144 (332)
Q Consensus 78 a~~-------~aDiVi~~ag~~~~~---~~~~---~~~~~~N~~~~~~i~~~i~~~~~~~~~viv~snp~~~~~~~~~~~ 144 (332)
+++ +.|+|||.||..... ..+. ...+..|+.....+++.+.+...+..+++++|+....
T Consensus 73 ~~~~~~~~~~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~iv~~ss~~~~-------- 144 (245)
T PRK12937 73 LFDAAETAFGRIDVLVNNAGVMPLGTIADFDLEDFDRTIATNLRGAFVVLREAARHLGQGGRIINLSTSVIA-------- 144 (245)
T ss_pred HHHHHHHHcCCCCEEEECCCCCCCCChhhCCHHHHHHHHhhhchHHHHHHHHHHHHhccCcEEEEEeecccc--------
Confidence 433 689999999864211 1122 2345677777777776665543234466666643211
Q ss_pred CCCCCCCcEEEeecccHHHHHHHHHHHcCCCCCCeee
Q 019990 145 APSIPAKNITCLTRLDHNRAMGQISERLKVHVSDVKN 181 (332)
Q Consensus 145 ~~~~~~~~i~~~t~l~~~r~~~~~a~~~~v~~~~v~~ 181 (332)
.+.+....|+.++.....+...+++.++ +..++.
T Consensus 145 -~~~~~~~~Y~~sK~a~~~~~~~~a~~~~--~~~i~v 178 (245)
T PRK12937 145 -LPLPGYGPYAASKAAVEGLVHVLANELR--GRGITV 178 (245)
T ss_pred -CCCCCCchhHHHHHHHHHHHHHHHHHhh--hcCeEE
Confidence 1234444677888777777777777654 334553
|
|
| >PRK08642 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=98.55 E-value=8.2e-07 Score=79.03 Aligned_cols=162 Identities=14% Similarity=0.061 Sum_probs=92.2
Q ss_pred CCCCCcEEEEEcCCChhHHHHHHHHHhcccCCCCCCeEEEEEecccchhhhhhhHhhhhhhccCCccceEEeCCHHHHhC
Q 019990 1 MAKNPLRVLVTGAAGQIGYALVPMIARGIMLGPDQPVILHMLDIEPAAEALNGVKMELIDAAFPLLKGVVATTDVVEACK 80 (332)
Q Consensus 1 m~~~~~kI~VtGaaG~IGs~l~~~L~~~~~~~~~~~~~i~l~D~~~~~~~~~~~~~dl~~~~~~~~~~v~~~~~~~~a~~ 80 (332)
|+.+.++|+||||+|+||++++..|++.|. ++.+.+.+.. +.+.....++.........|+....++.++++
T Consensus 1 ~~l~~k~ilItGas~gIG~~la~~l~~~G~-------~vv~~~~~~~-~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~ 72 (253)
T PRK08642 1 MQISEQTVLVTGGSRGLGAAIARAFAREGA-------RVVVNYHQSE-DAAEALADELGDRAIALQADVTDREQVQAMFA 72 (253)
T ss_pred CCCCCCEEEEeCCCCcHHHHHHHHHHHCCC-------eEEEEcCCCH-HHHHHHHHHhCCceEEEEcCCCCHHHHHHHHH
Confidence 666678999999999999999999998875 6766554321 12221111111000011124433333333332
Q ss_pred -------C-CcEEEEecCCCC-------C--CCCCh---hHHHhhhHHHHHHHHHHHHhhc--CCCcEEEEEeCChhhHH
Q 019990 81 -------D-VNIAVMVGGFPR-------K--EGMER---KDVMSKNVSIYKAQASALEKHA--APNCKVLVVANPANTNA 138 (332)
Q Consensus 81 -------~-aDiVi~~ag~~~-------~--~~~~~---~~~~~~N~~~~~~i~~~i~~~~--~~~~~viv~snp~~~~~ 138 (332)
. .|++||.||... . ...+. .+.+..|......+.+.+..+- ...+.++++++....
T Consensus 73 ~~~~~~g~~id~li~~ag~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~g~iv~iss~~~~-- 150 (253)
T PRK08642 73 TATEHFGKPITTVVNNALADFSFDGDARKKADDITWEDFQQQLEGSVKGALNTIQAALPGMREQGFGRIINIGTNLFQ-- 150 (253)
T ss_pred HHHHHhCCCCeEEEECCCccccccccCCCCcccCCHHHHHHHHhhhhhHHHHHHHHHHHHHHhcCCeEEEEECCcccc--
Confidence 2 899999997521 1 01121 2346677776666666654321 123566766653210
Q ss_pred HHHHHHCCCCCCCcEEEeecccHHHHHHHHHHHcCCCCCCeee
Q 019990 139 LILKEFAPSIPAKNITCLTRLDHNRAMGQISERLKVHVSDVKN 181 (332)
Q Consensus 139 ~~~~~~~~~~~~~~i~~~t~l~~~r~~~~~a~~~~v~~~~v~~ 181 (332)
...++...|+.+|.....+.+.+++.++ +..++.
T Consensus 151 -------~~~~~~~~Y~~sK~a~~~l~~~la~~~~--~~~i~v 184 (253)
T PRK08642 151 -------NPVVPYHDYTTAKAALLGLTRNLAAELG--PYGITV 184 (253)
T ss_pred -------CCCCCccchHHHHHHHHHHHHHHHHHhC--ccCeEE
Confidence 1233344788999999999988888765 344553
|
|
| >PLN02657 3,8-divinyl protochlorophyllide a 8-vinyl reductase | Back alignment and domain information |
|---|
Probab=98.54 E-value=4.3e-07 Score=86.61 Aligned_cols=115 Identities=17% Similarity=0.149 Sum_probs=73.6
Q ss_pred CCcEEEEEcCCChhHHHHHHHHHhcccCCCCCCeEEEEEecccchhhhhh--hHhhhhh--hcc-CCccceEEeCCHHHH
Q 019990 4 NPLRVLVTGAAGQIGYALVPMIARGIMLGPDQPVILHMLDIEPAAEALNG--VKMELID--AAF-PLLKGVVATTDVVEA 78 (332)
Q Consensus 4 ~~~kI~VtGaaG~IGs~l~~~L~~~~~~~~~~~~~i~l~D~~~~~~~~~~--~~~dl~~--~~~-~~~~~v~~~~~~~~a 78 (332)
+++||+||||+|+||++++..|++.++ +|++++++.. .... ...++.. ... ....|+....++.++
T Consensus 59 ~~~kVLVtGatG~IG~~l~~~Ll~~G~-------~V~~l~R~~~--~~~~~~~~~~~~~~~~~v~~v~~Dl~d~~~l~~~ 129 (390)
T PLN02657 59 KDVTVLVVGATGYIGKFVVRELVRRGY-------NVVAVAREKS--GIRGKNGKEDTKKELPGAEVVFGDVTDADSLRKV 129 (390)
T ss_pred CCCEEEEECCCcHHHHHHHHHHHHCCC-------EEEEEEechh--hccccchhhHHhhhcCCceEEEeeCCCHHHHHHH
Confidence 467999999999999999999998876 8888887532 1110 0001100 000 112455555556666
Q ss_pred hC----CCcEEEEecCCCCCCCCChhHHHhhhHHHHHHHHHHHHhhcCCCcEEEEEeC
Q 019990 79 CK----DVNIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEKHAAPNCKVLVVAN 132 (332)
Q Consensus 79 ~~----~aDiVi~~ag~~~~~~~~~~~~~~~N~~~~~~i~~~i~~~~~~~~~viv~sn 132 (332)
++ ++|+|||+++.+... . .+....|.....++++++++.+ . .++|++|+
T Consensus 130 ~~~~~~~~D~Vi~~aa~~~~~--~-~~~~~vn~~~~~~ll~aa~~~g-v-~r~V~iSS 182 (390)
T PLN02657 130 LFSEGDPVDVVVSCLASRTGG--V-KDSWKIDYQATKNSLDAGREVG-A-KHFVLLSA 182 (390)
T ss_pred HHHhCCCCcEEEECCccCCCC--C-ccchhhHHHHHHHHHHHHHHcC-C-CEEEEEee
Confidence 66 589999988753211 1 2335667888899999998875 2 25666664
|
|
| >PLN02253 xanthoxin dehydrogenase | Back alignment and domain information |
|---|
Probab=98.54 E-value=1.4e-06 Score=78.99 Aligned_cols=152 Identities=16% Similarity=0.100 Sum_probs=90.6
Q ss_pred CcEEEEEcCCChhHHHHHHHHHhcccCCCCCCeEEEEEecccchhhhhhhHhhhhhh-cc-CCccceEEeCCHHHHhC--
Q 019990 5 PLRVLVTGAAGQIGYALVPMIARGIMLGPDQPVILHMLDIEPAAEALNGVKMELIDA-AF-PLLKGVVATTDVVEACK-- 80 (332)
Q Consensus 5 ~~kI~VtGaaG~IGs~l~~~L~~~~~~~~~~~~~i~l~D~~~~~~~~~~~~~dl~~~-~~-~~~~~v~~~~~~~~a~~-- 80 (332)
.++++||||+|+||++++..|++.|. +|+++|++. +.......++... .. .+..|+....++.++++
T Consensus 18 ~k~~lItGas~gIG~~la~~l~~~G~-------~v~~~~~~~--~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~ 88 (280)
T PLN02253 18 GKVALVTGGATGIGESIVRLFHKHGA-------KVCIVDLQD--DLGQNVCDSLGGEPNVCFFHCDVTVEDDVSRAVDFT 88 (280)
T ss_pred CCEEEEECCCchHHHHHHHHHHHcCC-------EEEEEeCCH--HHHHHHHHHhcCCCceEEEEeecCCHHHHHHHHHHH
Confidence 46799999999999999999998875 899998753 2222222222110 00 11234444333444333
Q ss_pred -----CCcEEEEecCCCCCC-----CCCh---hHHHhhhHHHHHHHHHHHHhhc--CCCcEEEEEeCChhhHHHHHHHHC
Q 019990 81 -----DVNIAVMVGGFPRKE-----GMER---KDVMSKNVSIYKAQASALEKHA--APNCKVLVVANPANTNALILKEFA 145 (332)
Q Consensus 81 -----~aDiVi~~ag~~~~~-----~~~~---~~~~~~N~~~~~~i~~~i~~~~--~~~~~viv~snp~~~~~~~~~~~~ 145 (332)
..|++||.||..... ..+. ...++.|+.....+++++.+.- ...+.++++++....
T Consensus 89 ~~~~g~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~g~ii~isS~~~~--------- 159 (280)
T PLN02253 89 VDKFGTLDIMVNNAGLTGPPCPDIRNVELSEFEKVFDVNVKGVFLGMKHAARIMIPLKKGSIVSLCSVASA--------- 159 (280)
T ss_pred HHHhCCCCEEEECCCcCCCCCCCcccCCHHHHHHHHhHhhHHHHHHHHHHHHHHHhcCCceEEEecChhhc---------
Confidence 689999999874321 1121 2356778777666665554321 123466666653221
Q ss_pred CCCCCCcEEEeecccHHHHHHHHHHHcCC
Q 019990 146 PSIPAKNITCLTRLDHNRAMGQISERLKV 174 (332)
Q Consensus 146 ~~~~~~~i~~~t~l~~~r~~~~~a~~~~v 174 (332)
.+.+....|+.+|.....+.+.+++.++-
T Consensus 160 ~~~~~~~~Y~~sK~a~~~~~~~la~e~~~ 188 (280)
T PLN02253 160 IGGLGPHAYTGSKHAVLGLTRSVAAELGK 188 (280)
T ss_pred ccCCCCcccHHHHHHHHHHHHHHHHHhhh
Confidence 11222336888999888998888888764
|
|
| >PRK07326 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=98.54 E-value=4.1e-07 Score=80.20 Aligned_cols=151 Identities=14% Similarity=0.100 Sum_probs=82.1
Q ss_pred CCcEEEEEcCCChhHHHHHHHHHhcccCCCCCCeEEEEEecccchhhhhhhHhhhhhh-cc-CCccceEEeCCHHHHh--
Q 019990 4 NPLRVLVTGAAGQIGYALVPMIARGIMLGPDQPVILHMLDIEPAAEALNGVKMELIDA-AF-PLLKGVVATTDVVEAC-- 79 (332)
Q Consensus 4 ~~~kI~VtGaaG~IGs~l~~~L~~~~~~~~~~~~~i~l~D~~~~~~~~~~~~~dl~~~-~~-~~~~~v~~~~~~~~a~-- 79 (332)
..++|+||||+|++|++++..|+..+. +|++++++. +.+.....++... .. ....++....++.+.+
T Consensus 5 ~~~~ilItGatg~iG~~la~~l~~~g~-------~V~~~~r~~--~~~~~~~~~l~~~~~~~~~~~D~~~~~~~~~~~~~ 75 (237)
T PRK07326 5 KGKVALITGGSKGIGFAIAEALLAEGY-------KVAITARDQ--KELEEAAAELNNKGNVLGLAADVRDEADVQRAVDA 75 (237)
T ss_pred CCCEEEEECCCCcHHHHHHHHHHHCCC-------EEEEeeCCH--HHHHHHHHHHhccCcEEEEEccCCCHHHHHHHHHH
Confidence 457899999999999999999998775 789998754 2222222233211 00 0112333233333333
Q ss_pred -----CCCcEEEEecCCCCCC---CCChh---HHHhhhHHHHHHHHHHHHhhc-CCCcEEEEEeCChhhHHHHHHHHCCC
Q 019990 80 -----KDVNIAVMVGGFPRKE---GMERK---DVMSKNVSIYKAQASALEKHA-APNCKVLVVANPANTNALILKEFAPS 147 (332)
Q Consensus 80 -----~~aDiVi~~ag~~~~~---~~~~~---~~~~~N~~~~~~i~~~i~~~~-~~~~~viv~snp~~~~~~~~~~~~~~ 147 (332)
..+|+|||++|..... ..+.. +.+..|+.....+.+++.+.. .....++++|+.... .+
T Consensus 76 ~~~~~~~~d~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~iv~~ss~~~~---------~~ 146 (237)
T PRK07326 76 IVAAFGGLDVLIANAGVGHFAPVEELTPEEWRLVIDTNLTGAFYTIKAAVPALKRGGGYIINISSLAGT---------NF 146 (237)
T ss_pred HHHHcCCCCEEEECCCCCCCCchhhCCHHHHHHHHhhccHHHHHHHHHHHHHHHHCCeEEEEECChhhc---------cC
Confidence 3789999999864321 12222 345667766666655554431 123456666653211 11
Q ss_pred CCCCcEEEeecccHHHHHHHHHHHc
Q 019990 148 IPAKNITCLTRLDHNRAMGQISERL 172 (332)
Q Consensus 148 ~~~~~i~~~t~l~~~r~~~~~a~~~ 172 (332)
.+....|+.++.....+...++..+
T Consensus 147 ~~~~~~y~~sk~a~~~~~~~~~~~~ 171 (237)
T PRK07326 147 FAGGAAYNASKFGLVGFSEAAMLDL 171 (237)
T ss_pred CCCCchHHHHHHHHHHHHHHHHHHh
Confidence 2222345556655555555555443
|
|
| >PRK12320 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=98.54 E-value=3.5e-07 Score=92.18 Aligned_cols=135 Identities=12% Similarity=0.135 Sum_probs=84.8
Q ss_pred cEEEEEcCCChhHHHHHHHHHhcccCCCCCCeEEEEEecccchhhhhhhHhhhhhhcc-CCccceEEeCCHHHHhCCCcE
Q 019990 6 LRVLVTGAAGQIGYALVPMIARGIMLGPDQPVILHMLDIEPAAEALNGVKMELIDAAF-PLLKGVVATTDVVEACKDVNI 84 (332)
Q Consensus 6 ~kI~VtGaaG~IGs~l~~~L~~~~~~~~~~~~~i~l~D~~~~~~~~~~~~~dl~~~~~-~~~~~v~~~~~~~~a~~~aDi 84 (332)
|||+||||+||||++++..|++.++ +|+.+|+... .. ....+ ....++... .+.+++.++|+
T Consensus 1 MkILVTGAaGFIGs~La~~Ll~~G~-------~Vi~ldr~~~--~~-------~~~~ve~v~~Dl~d~-~l~~al~~~D~ 63 (699)
T PRK12320 1 MQILVTDATGAVGRSVTRQLIAAGH-------TVSGIAQHPH--DA-------LDPRVDYVCASLRNP-VLQELAGEADA 63 (699)
T ss_pred CEEEEECCCCHHHHHHHHHHHhCCC-------EEEEEeCChh--hc-------ccCCceEEEccCCCH-HHHHHhcCCCE
Confidence 4899999999999999999998876 8999986431 10 00001 111334332 24566789999
Q ss_pred EEEecCCCCCCCCChhHHHhhhHHHHHHHHHHHHhhcCCCcEEEEEeCChhhHHHHHHHHCCCCCCCcEEEeecccHHHH
Q 019990 85 AVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEKHAAPNCKVLVVANPANTNALILKEFAPSIPAKNITCLTRLDHNRA 164 (332)
Q Consensus 85 Vi~~ag~~~~~~~~~~~~~~~N~~~~~~i~~~i~~~~~~~~~viv~snp~~~~~~~~~~~~~~~~~~~i~~~t~l~~~r~ 164 (332)
|||+|+... .. ....|+.++.++++++++.+ +++|++|+-.. . + . .+. ..+.+
T Consensus 64 VIHLAa~~~--~~----~~~vNv~Gt~nLleAA~~~G---vRiV~~SS~~G----------~--~-~-~~~----~aE~l 116 (699)
T PRK12320 64 VIHLAPVDT--SA----PGGVGITGLAHVANAAARAG---ARLLFVSQAAG----------R--P-E-LYR----QAETL 116 (699)
T ss_pred EEEcCccCc--cc----hhhHHHHHHHHHHHHHHHcC---CeEEEEECCCC----------C--C-c-ccc----HHHHH
Confidence 999997531 11 12468899999999998874 36666664210 0 0 0 000 12222
Q ss_pred HHHHHHHcCCCCCCeeeeEEEecC
Q 019990 165 MGQISERLKVHVSDVKNVIIWGNH 188 (332)
Q Consensus 165 ~~~~a~~~~v~~~~v~~~~V~G~h 188 (332)
....+++...+|.++|||+.
T Consensus 117 ----l~~~~~p~~ILR~~nVYGp~ 136 (699)
T PRK12320 117 ----VSTGWAPSLVIRIAPPVGRQ 136 (699)
T ss_pred ----HHhcCCCEEEEeCceecCCC
Confidence 23355777788888888864
|
|
| >PRK10538 malonic semialdehyde reductase; Provisional | Back alignment and domain information |
|---|
Probab=98.54 E-value=9.1e-07 Score=78.79 Aligned_cols=156 Identities=15% Similarity=0.118 Sum_probs=86.7
Q ss_pred cEEEEEcCCChhHHHHHHHHHhcccCCCCCCeEEEEEecccchhhhhhhHhhhhhhccCCccceEEeCCHHHH-------
Q 019990 6 LRVLVTGAAGQIGYALVPMIARGIMLGPDQPVILHMLDIEPAAEALNGVKMELIDAAFPLLKGVVATTDVVEA------- 78 (332)
Q Consensus 6 ~kI~VtGaaG~IGs~l~~~L~~~~~~~~~~~~~i~l~D~~~~~~~~~~~~~dl~~~~~~~~~~v~~~~~~~~a------- 78 (332)
|+|+||||+|++|++++..|++.|. +|.+++++. +.+......+..-......|+....++.+.
T Consensus 1 ~~vlItGasg~iG~~la~~l~~~G~-------~V~~~~r~~--~~~~~~~~~~~~~~~~~~~Dl~~~~~i~~~~~~~~~~ 71 (248)
T PRK10538 1 MIVLVTGATAGFGECITRRFIQQGH-------KVIATGRRQ--ERLQELKDELGDNLYIAQLDVRNRAAIEEMLASLPAE 71 (248)
T ss_pred CEEEEECCCchHHHHHHHHHHHCCC-------EEEEEECCH--HHHHHHHHHhccceEEEEecCCCHHHHHHHHHHHHHH
Confidence 4799999999999999999998875 889998853 222221111110000111233333333332
Q ss_pred hCCCcEEEEecCCCC--CC--CCCh---hHHHhhhHHHHHHHHHHHHhhc--CCCcEEEEEeCChhhHHHHHHHHCCCCC
Q 019990 79 CKDVNIAVMVGGFPR--KE--GMER---KDVMSKNVSIYKAQASALEKHA--APNCKVLVVANPANTNALILKEFAPSIP 149 (332)
Q Consensus 79 ~~~aDiVi~~ag~~~--~~--~~~~---~~~~~~N~~~~~~i~~~i~~~~--~~~~~viv~snp~~~~~~~~~~~~~~~~ 149 (332)
+.++|+|||.+|... .+ ..+. .+.++.|......+...+..+. ....+++++|+.... .+++
T Consensus 72 ~~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~iv~isS~~~~---------~~~~ 142 (248)
T PRK10538 72 WRNIDVLVNNAGLALGLEPAHKASVEDWETMIDTNNKGLVYMTRAVLPGMVERNHGHIINIGSTAGS---------WPYA 142 (248)
T ss_pred cCCCCEEEECCCccCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCcEEEEECCcccC---------CCCC
Confidence 237899999998632 11 1122 2346667766544444443322 123466666653211 1233
Q ss_pred CCcEEEeecccHHHHHHHHHHHcCCCCCCeee
Q 019990 150 AKNITCLTRLDHNRAMGQISERLKVHVSDVKN 181 (332)
Q Consensus 150 ~~~i~~~t~l~~~r~~~~~a~~~~v~~~~v~~ 181 (332)
....|+.++.....+...+++.++ +..++.
T Consensus 143 ~~~~Y~~sK~~~~~~~~~l~~~~~--~~~i~v 172 (248)
T PRK10538 143 GGNVYGATKAFVRQFSLNLRTDLH--GTAVRV 172 (248)
T ss_pred CCchhHHHHHHHHHHHHHHHHHhc--CCCcEE
Confidence 344677777776777777776654 345553
|
|
| >PRK12828 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=98.54 E-value=3.9e-07 Score=80.17 Aligned_cols=151 Identities=14% Similarity=0.075 Sum_probs=82.0
Q ss_pred CCcEEEEEcCCChhHHHHHHHHHhcccCCCCCCeEEEEEecccchhhhhhhHhhhhhhccC-CccceEEeCCHHHHh---
Q 019990 4 NPLRVLVTGAAGQIGYALVPMIARGIMLGPDQPVILHMLDIEPAAEALNGVKMELIDAAFP-LLKGVVATTDVVEAC--- 79 (332)
Q Consensus 4 ~~~kI~VtGaaG~IGs~l~~~L~~~~~~~~~~~~~i~l~D~~~~~~~~~~~~~dl~~~~~~-~~~~v~~~~~~~~a~--- 79 (332)
+.++|+||||+|+||++++..|++.|. ++++++++.. .......++...... ...|+....++.+++
T Consensus 6 ~~k~vlItGatg~iG~~la~~l~~~G~-------~v~~~~r~~~--~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~ 76 (239)
T PRK12828 6 QGKVVAITGGFGGLGRATAAWLAARGA-------RVALIGRGAA--PLSQTLPGVPADALRIGGIDLVDPQAARRAVDEV 76 (239)
T ss_pred CCCEEEEECCCCcHhHHHHHHHHHCCC-------eEEEEeCChH--hHHHHHHHHhhcCceEEEeecCCHHHHHHHHHHH
Confidence 467899999999999999999998875 7999998542 222112222211111 112333323333332
Q ss_pred ----CCCcEEEEecCCCCCC---CCCh---hHHHhhhHHHHHHHHHHHHhhc--CCCcEEEEEeCChhhHHHHHHHHCCC
Q 019990 80 ----KDVNIAVMVGGFPRKE---GMER---KDVMSKNVSIYKAQASALEKHA--APNCKVLVVANPANTNALILKEFAPS 147 (332)
Q Consensus 80 ----~~aDiVi~~ag~~~~~---~~~~---~~~~~~N~~~~~~i~~~i~~~~--~~~~~viv~snp~~~~~~~~~~~~~~ 147 (332)
.++|+|||.+|..... ..+. .+.+..|......+++++.++- .+..+++++|+.... ..
T Consensus 77 ~~~~~~~d~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~iv~~sS~~~~---------~~ 147 (239)
T PRK12828 77 NRQFGRLDALVNIAGAFVWGTIADGDADTWDRMYGVNVKTTLNASKAALPALTASGGGRIVNIGAGAAL---------KA 147 (239)
T ss_pred HHHhCCcCEEEECCcccCcCChhhCCHHHHHHHHHhhchhHHHHHHHHHHHHHhcCCCEEEEECchHhc---------cC
Confidence 3689999998863211 1122 2235567766666666654321 123466666653211 11
Q ss_pred CCCCcEEEeecccHHHHHHHHHHHc
Q 019990 148 IPAKNITCLTRLDHNRAMGQISERL 172 (332)
Q Consensus 148 ~~~~~i~~~t~l~~~r~~~~~a~~~ 172 (332)
.+....|+.++.....+...+++.+
T Consensus 148 ~~~~~~y~~sk~a~~~~~~~~a~~~ 172 (239)
T PRK12828 148 GPGMGAYAAAKAGVARLTEALAAEL 172 (239)
T ss_pred CCCcchhHHHHHHHHHHHHHHHHHh
Confidence 1222245556655555555566553
|
|
| >PRK07024 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=98.54 E-value=5.1e-07 Score=80.89 Aligned_cols=148 Identities=19% Similarity=0.220 Sum_probs=86.1
Q ss_pred CcEEEEEcCCChhHHHHHHHHHhcccCCCCCCeEEEEEecccchhhhhhhHhhhhhh-cc-CCccceEEeCCHHHHhC--
Q 019990 5 PLRVLVTGAAGQIGYALVPMIARGIMLGPDQPVILHMLDIEPAAEALNGVKMELIDA-AF-PLLKGVVATTDVVEACK-- 80 (332)
Q Consensus 5 ~~kI~VtGaaG~IGs~l~~~L~~~~~~~~~~~~~i~l~D~~~~~~~~~~~~~dl~~~-~~-~~~~~v~~~~~~~~a~~-- 80 (332)
+++|+||||+|+||.+++..|++.|. +|+++|++. +.+.....++... .. ....|++...++.++++
T Consensus 2 ~~~vlItGas~gIG~~la~~l~~~G~-------~v~~~~r~~--~~~~~~~~~~~~~~~~~~~~~Dl~~~~~i~~~~~~~ 72 (257)
T PRK07024 2 PLKVFITGASSGIGQALAREYARQGA-------TLGLVARRT--DALQAFAARLPKAARVSVYAADVRDADALAAAAADF 72 (257)
T ss_pred CCEEEEEcCCcHHHHHHHHHHHHCCC-------EEEEEeCCH--HHHHHHHHhcccCCeeEEEEcCCCCHHHHHHHHHHH
Confidence 36899999999999999999998875 799999753 2333222222111 11 11234443333433332
Q ss_pred -----CCcEEEEecCCCCCCC----CCh---hHHHhhhHHHHHHHH----HHHHhhcCCCcEEEEEeCChhhHHHHHHHH
Q 019990 81 -----DVNIAVMVGGFPRKEG----MER---KDVMSKNVSIYKAQA----SALEKHAAPNCKVLVVANPANTNALILKEF 144 (332)
Q Consensus 81 -----~aDiVi~~ag~~~~~~----~~~---~~~~~~N~~~~~~i~----~~i~~~~~~~~~viv~snp~~~~~~~~~~~ 144 (332)
..|++||.+|...... .+. ...++.|+.....+. ..+++.+ ...++++++-...
T Consensus 73 ~~~~g~id~lv~~ag~~~~~~~~~~~~~~~~~~~~~~n~~g~~~l~~~~l~~~~~~~--~~~iv~isS~~~~-------- 142 (257)
T PRK07024 73 IAAHGLPDVVIANAGISVGTLTEEREDLAVFREVMDTNYFGMVATFQPFIAPMRAAR--RGTLVGIASVAGV-------- 142 (257)
T ss_pred HHhCCCCCEEEECCCcCCCccccccCCHHHHHHHHhHhcHHHHHHHHHHHHHHHhcC--CCEEEEEechhhc--------
Confidence 3699999998643211 111 234566766555544 4555543 3466666642211
Q ss_pred CCCCCCCcEEEeecccHHHHHHHHHHHc
Q 019990 145 APSIPAKNITCLTRLDHNRAMGQISERL 172 (332)
Q Consensus 145 ~~~~~~~~i~~~t~l~~~r~~~~~a~~~ 172 (332)
.+.+....|+.+|.....+...++..+
T Consensus 143 -~~~~~~~~Y~asK~a~~~~~~~l~~e~ 169 (257)
T PRK07024 143 -RGLPGAGAYSASKAAAIKYLESLRVEL 169 (257)
T ss_pred -CCCCCCcchHHHHHHHHHHHHHHHHHh
Confidence 123333467888888888877777654
|
|
| >COG0300 DltE Short-chain dehydrogenases of various substrate specificities [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.53 E-value=1.2e-06 Score=78.04 Aligned_cols=171 Identities=17% Similarity=0.153 Sum_probs=106.6
Q ss_pred CCCcEEEEEcCCChhHHHHHHHHHhcccCCCCCCeEEEEEecccchhhhhhhHhhhhhhc---c-CCccceEEeCCHHHH
Q 019990 3 KNPLRVLVTGAAGQIGYALVPMIARGIMLGPDQPVILHMLDIEPAAEALNGVKMELIDAA---F-PLLKGVVATTDVVEA 78 (332)
Q Consensus 3 ~~~~kI~VtGaaG~IGs~l~~~L~~~~~~~~~~~~~i~l~D~~~~~~~~~~~~~dl~~~~---~-~~~~~v~~~~~~~~a 78 (332)
+++++++||||++.||..++..|++.|+ .+.|+.++. +++.....++.+.. . ....|++...+....
T Consensus 4 ~~~~~~lITGASsGIG~~~A~~lA~~g~-------~liLvaR~~--~kL~~la~~l~~~~~v~v~vi~~DLs~~~~~~~l 74 (265)
T COG0300 4 MKGKTALITGASSGIGAELAKQLARRGY-------NLILVARRE--DKLEALAKELEDKTGVEVEVIPADLSDPEALERL 74 (265)
T ss_pred CCCcEEEEECCCchHHHHHHHHHHHCCC-------EEEEEeCcH--HHHHHHHHHHHHhhCceEEEEECcCCChhHHHHH
Confidence 4677899999999999999999999986 899999864 57777777776532 1 122455544443321
Q ss_pred ---h----CCCcEEEEecCCCCCC------CCChhHHHhhhHHHH----HHHHHHHHhhcCCCcEEEEEeCChhhHHHHH
Q 019990 79 ---C----KDVNIAVMVGGFPRKE------GMERKDVMSKNVSIY----KAQASALEKHAAPNCKVLVVANPANTNALIL 141 (332)
Q Consensus 79 ---~----~~aDiVi~~ag~~~~~------~~~~~~~~~~N~~~~----~~i~~~i~~~~~~~~~viv~snp~~~~~~~~ 141 (332)
+ ...|+.|..||..... .....++++.|+... +.++..+.+.+ .+.+|++++-...
T Consensus 75 ~~~l~~~~~~IdvLVNNAG~g~~g~f~~~~~~~~~~mi~lN~~a~~~LT~~~lp~m~~~~--~G~IiNI~S~ag~----- 147 (265)
T COG0300 75 EDELKERGGPIDVLVNNAGFGTFGPFLELSLDEEEEMIQLNILALTRLTKAVLPGMVERG--AGHIINIGSAAGL----- 147 (265)
T ss_pred HHHHHhcCCcccEEEECCCcCCccchhhCChHHHHHHHHHHHHHHHHHHHHHHHHHHhcC--CceEEEEechhhc-----
Confidence 2 2589999999874321 122345777786544 55566666643 4577887753221
Q ss_pred HHHCCCCCCCcEEEeecccHHHHHHHHHHHcCCCCCCeeeeEEEecCCCceeeccc
Q 019990 142 KEFAPSIPAKNITCLTRLDHNRAMGQISERLKVHVSDVKNVIIWGNHSSTQYPDVN 197 (332)
Q Consensus 142 ~~~~~~~~~~~i~~~t~l~~~r~~~~~a~~~~v~~~~v~~~~V~G~hg~~~v~~~s 197 (332)
..-|...+|+.||---.-|...+...+ ....|+... +.+ |.+.-..|.
T Consensus 148 ----~p~p~~avY~ATKa~v~~fSeaL~~EL--~~~gV~V~~-v~P-G~~~T~f~~ 195 (265)
T COG0300 148 ----IPTPYMAVYSATKAFVLSFSEALREEL--KGTGVKVTA-VCP-GPTRTEFFD 195 (265)
T ss_pred ----CCCcchHHHHHHHHHHHHHHHHHHHHh--cCCCeEEEE-Eec-Ccccccccc
Confidence 112333467777766666666666555 556666543 343 444444443
|
|
| >PRK06077 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=98.53 E-value=4.1e-07 Score=80.93 Aligned_cols=154 Identities=15% Similarity=0.090 Sum_probs=86.7
Q ss_pred CCCcEEEEEcCCChhHHHHHHHHHhcccCCCCCCeEEEEEecccchhhhhhhHhhhhhhc--c-CCccceEEeCCHHHH-
Q 019990 3 KNPLRVLVTGAAGQIGYALVPMIARGIMLGPDQPVILHMLDIEPAAEALNGVKMELIDAA--F-PLLKGVVATTDVVEA- 78 (332)
Q Consensus 3 ~~~~kI~VtGaaG~IGs~l~~~L~~~~~~~~~~~~~i~l~D~~~~~~~~~~~~~dl~~~~--~-~~~~~v~~~~~~~~a- 78 (332)
.++++|+||||+|+||++++..|++.+. ++++...... +........+.... . ....|++...++.++
T Consensus 4 ~~~~~vlitGasg~iG~~l~~~l~~~g~-------~v~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~ 75 (252)
T PRK06077 4 LKDKVVVVTGSGRGIGRAIAVRLAKEGS-------LVVVNAKKRA-EEMNETLKMVKENGGEGIGVLADVSTREGCETLA 75 (252)
T ss_pred CCCcEEEEeCCCChHHHHHHHHHHHCCC-------EEEEEeCCCh-HHHHHHHHHHHHcCCeeEEEEeccCCHHHHHHHH
Confidence 4568999999999999999999998875 5655443221 12222222221110 0 011233333322222
Q ss_pred ------hCCCcEEEEecCCCCCC---CCCh---hHHHhhhHHHHHHHHHHHHhhcCCCcEEEEEeCChhhHHHHHHHHCC
Q 019990 79 ------CKDVNIAVMVGGFPRKE---GMER---KDVMSKNVSIYKAQASALEKHAAPNCKVLVVANPANTNALILKEFAP 146 (332)
Q Consensus 79 ------~~~aDiVi~~ag~~~~~---~~~~---~~~~~~N~~~~~~i~~~i~~~~~~~~~viv~snp~~~~~~~~~~~~~ 146 (332)
+...|+|||+||..... ..+. .+.++.|......+.+.+.++-.+..+++++|+-.. + .
T Consensus 76 ~~~~~~~~~~d~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~iv~~sS~~~---~------~ 146 (252)
T PRK06077 76 KATIDRYGVADILVNNAGLGLFSPFLNVDDKLIDKHISTDFKSVIYCSQELAKEMREGGAIVNIASVAG---I------R 146 (252)
T ss_pred HHHHHHcCCCCEEEECCCCCCCCChhhCCHHHHHHHHhHhCHHHHHHHHHHHHHhhcCcEEEEEcchhc---c------C
Confidence 34679999999863211 1222 234566776666666666654323346666664211 0 2
Q ss_pred CCCCCcEEEeecccHHHHHHHHHHHcC
Q 019990 147 SIPAKNITCLTRLDHNRAMGQISERLK 173 (332)
Q Consensus 147 ~~~~~~i~~~t~l~~~r~~~~~a~~~~ 173 (332)
+.++...|+.++.....+...+++.++
T Consensus 147 ~~~~~~~Y~~sK~~~~~~~~~l~~~~~ 173 (252)
T PRK06077 147 PAYGLSIYGAMKAAVINLTKYLALELA 173 (252)
T ss_pred CCCCchHHHHHHHHHHHHHHHHHHHHh
Confidence 334444577788877888888888875
|
|
| >PRK12936 3-ketoacyl-(acyl-carrier-protein) reductase NodG; Reviewed | Back alignment and domain information |
|---|
Probab=98.53 E-value=6.7e-07 Score=79.14 Aligned_cols=158 Identities=16% Similarity=0.210 Sum_probs=87.1
Q ss_pred CCcEEEEEcCCChhHHHHHHHHHhcccCCCCCCeEEEEEecccchhhhhhhHhhhhhhccCCccceEEeCCHHHH-----
Q 019990 4 NPLRVLVTGAAGQIGYALVPMIARGIMLGPDQPVILHMLDIEPAAEALNGVKMELIDAAFPLLKGVVATTDVVEA----- 78 (332)
Q Consensus 4 ~~~kI~VtGaaG~IGs~l~~~L~~~~~~~~~~~~~i~l~D~~~~~~~~~~~~~dl~~~~~~~~~~v~~~~~~~~a----- 78 (332)
+.++++||||+|+||++++..|++.+. .+.+.+.+. +.+.....++.........|+....++.++
T Consensus 5 ~~~~vlItGa~g~iG~~la~~l~~~g~-------~v~~~~~~~--~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~ 75 (245)
T PRK12936 5 SGRKALVTGASGGIGEEIARLLHAQGA-------IVGLHGTRV--EKLEALAAELGERVKIFPANLSDRDEVKALGQKAE 75 (245)
T ss_pred CCCEEEEECCCChHHHHHHHHHHHCCC-------EEEEEcCCH--HHHHHHHHHhCCceEEEEccCCCHHHHHHHHHHHH
Confidence 567999999999999999999998875 677777643 223222112110000111233332233222
Q ss_pred --hCCCcEEEEecCCCCCC---CCC---hhHHHhhhHHHHHHHHHHHHhhc--CCCcEEEEEeCChhhHHHHHHHHCCCC
Q 019990 79 --CKDVNIAVMVGGFPRKE---GME---RKDVMSKNVSIYKAQASALEKHA--APNCKVLVVANPANTNALILKEFAPSI 148 (332)
Q Consensus 79 --~~~aDiVi~~ag~~~~~---~~~---~~~~~~~N~~~~~~i~~~i~~~~--~~~~~viv~snp~~~~~~~~~~~~~~~ 148 (332)
+...|+|||+||..... ..+ -...++.|+.....+++++.+.. .....++++|+.... .+.
T Consensus 76 ~~~~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~iv~~sS~~~~---------~~~ 146 (245)
T PRK12936 76 ADLEGVDILVNNAGITKDGLFVRMSDEDWDSVLEVNLTATFRLTRELTHPMMRRRYGRIINITSVVGV---------TGN 146 (245)
T ss_pred HHcCCCCEEEECCCCCCCCccccCCHHHHHHHHhhccHHHHHHHHHHHHHHHHhCCCEEEEECCHHhC---------cCC
Confidence 34689999999864211 111 12346677776666655543321 123466777754221 122
Q ss_pred CCCcEEEeecccHHHHHHHHHHHcCCCCCCeee
Q 019990 149 PAKNITCLTRLDHNRAMGQISERLKVHVSDVKN 181 (332)
Q Consensus 149 ~~~~i~~~t~l~~~r~~~~~a~~~~v~~~~v~~ 181 (332)
+....|+.++.....+.+.+++.+. +..++.
T Consensus 147 ~~~~~Y~~sk~a~~~~~~~la~~~~--~~~i~v 177 (245)
T PRK12936 147 PGQANYCASKAGMIGFSKSLAQEIA--TRNVTV 177 (245)
T ss_pred CCCcchHHHHHHHHHHHHHHHHHhh--HhCeEE
Confidence 3333567777766667666776643 234553
|
|
| >PRK08267 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=98.53 E-value=1.2e-06 Score=78.51 Aligned_cols=159 Identities=16% Similarity=0.128 Sum_probs=88.4
Q ss_pred CcEEEEEcCCChhHHHHHHHHHhcccCCCCCCeEEEEEecccchhhhhhhHhhhhhhcc-CCccceEEeCCHHHHh----
Q 019990 5 PLRVLVTGAAGQIGYALVPMIARGIMLGPDQPVILHMLDIEPAAEALNGVKMELIDAAF-PLLKGVVATTDVVEAC---- 79 (332)
Q Consensus 5 ~~kI~VtGaaG~IGs~l~~~L~~~~~~~~~~~~~i~l~D~~~~~~~~~~~~~dl~~~~~-~~~~~v~~~~~~~~a~---- 79 (332)
|++++||||+|+||++++..|++.|. +|.+++++. +.+.....++..... ....|+....++.+++
T Consensus 1 mk~vlItGasg~iG~~la~~l~~~G~-------~V~~~~r~~--~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~ 71 (260)
T PRK08267 1 MKSIFITGAASGIGRATALLFAAEGW-------RVGAYDINE--AGLAALAAELGAGNAWTGALDVTDRAAWDAALADFA 71 (260)
T ss_pred CcEEEEeCCCchHHHHHHHHHHHCCC-------eEEEEeCCH--HHHHHHHHHhcCCceEEEEecCCCHHHHHHHHHHHH
Confidence 35799999999999999999998885 788888753 222222112211111 1123443333333333
Q ss_pred ----CCCcEEEEecCCCCCC---CCC---hhHHHhhhHHHHHHHHHHHHhhc--CCCcEEEEEeCChhhHHHHHHHHCCC
Q 019990 80 ----KDVNIAVMVGGFPRKE---GME---RKDVMSKNVSIYKAQASALEKHA--APNCKVLVVANPANTNALILKEFAPS 147 (332)
Q Consensus 80 ----~~aDiVi~~ag~~~~~---~~~---~~~~~~~N~~~~~~i~~~i~~~~--~~~~~viv~snp~~~~~~~~~~~~~~ 147 (332)
...|+|||+||..... ..+ ....+..|+.....+.+++..+- .+..+++++|+.... .+
T Consensus 72 ~~~~~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~iv~isS~~~~---------~~ 142 (260)
T PRK08267 72 AATGGRLDVLFNNAGILRGGPFEDIPLEAHDRVIDINVKGVLNGAHAALPYLKATPGARVINTSSASAI---------YG 142 (260)
T ss_pred HHcCCCCCEEEECCCCCCCCccccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhCCCCEEEEeCchhhC---------cC
Confidence 2469999999874321 111 13356778877766666654321 134566766653221 11
Q ss_pred CCCCcEEEeecccHHHHHHHHHHHcCCCCCCeeeeE
Q 019990 148 IPAKNITCLTRLDHNRAMGQISERLKVHVSDVKNVI 183 (332)
Q Consensus 148 ~~~~~i~~~t~l~~~r~~~~~a~~~~v~~~~v~~~~ 183 (332)
.+....|+.++.....+...++..+. +..++...
T Consensus 143 ~~~~~~Y~~sKaa~~~~~~~l~~~~~--~~~i~v~~ 176 (260)
T PRK08267 143 QPGLAVYSATKFAVRGLTEALDLEWR--RHGIRVAD 176 (260)
T ss_pred CCCchhhHHHHHHHHHHHHHHHHHhc--ccCcEEEE
Confidence 11122456666666666666666543 34565433
|
|
| >TIGR01963 PHB_DH 3-hydroxybutyrate dehydrogenase | Back alignment and domain information |
|---|
Probab=98.52 E-value=6.9e-07 Score=79.52 Aligned_cols=147 Identities=16% Similarity=0.148 Sum_probs=80.5
Q ss_pred cEEEEEcCCChhHHHHHHHHHhcccCCCCCCeEEEEEecccchhhhhhhHhhhhhhc--c-CCccceEEeCC-------H
Q 019990 6 LRVLVTGAAGQIGYALVPMIARGIMLGPDQPVILHMLDIEPAAEALNGVKMELIDAA--F-PLLKGVVATTD-------V 75 (332)
Q Consensus 6 ~kI~VtGaaG~IGs~l~~~L~~~~~~~~~~~~~i~l~D~~~~~~~~~~~~~dl~~~~--~-~~~~~v~~~~~-------~ 75 (332)
++|+||||+|++|++++..|++.|. +|++++++.. ..+....++.... . ....|+....+ .
T Consensus 2 ~~vlItGa~g~lG~~l~~~l~~~g~-------~v~~~~r~~~--~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~ 72 (255)
T TIGR01963 2 KTALVTGAASGIGLAIALALAAAGA-------NVVVNDLGEA--GAEAAAKVATDAGGSVIYLVADVTKEDEIADMIAAA 72 (255)
T ss_pred CEEEEcCCcchHHHHHHHHHHHCCC-------EEEEEeCCHH--HHHHHHHHHHhcCCceEEEECCCCCHHHHHHHHHHH
Confidence 5799999999999999999998875 8999998642 2222212221110 1 01123333332 2
Q ss_pred HHHhCCCcEEEEecCCCCCC---CCCh---hHHHhhhHHHHHHHHHHH----HhhcCCCcEEEEEeCChhhHHHHHHHHC
Q 019990 76 VEACKDVNIAVMVGGFPRKE---GMER---KDVMSKNVSIYKAQASAL----EKHAAPNCKVLVVANPANTNALILKEFA 145 (332)
Q Consensus 76 ~~a~~~aDiVi~~ag~~~~~---~~~~---~~~~~~N~~~~~~i~~~i----~~~~~~~~~viv~snp~~~~~~~~~~~~ 145 (332)
.+.+.+.|+|||.+|..... ..+. ...++.|......+.+.+ ++.. ..+++++|+....
T Consensus 73 ~~~~~~~d~vi~~a~~~~~~~~~~~~~~~~~~~~~~n~~g~~~~~~~~~~~~~~~~--~~~~v~~ss~~~~--------- 141 (255)
T TIGR01963 73 AAEFGGLDILVNNAGIQHVAPIEEFPPEDWDRIIAIMLTSAFHTIRAALPHMKKQG--WGRIINIASAHGL--------- 141 (255)
T ss_pred HHhcCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcC--CeEEEEEcchhhc---------
Confidence 23345689999999864211 1121 234556776655555555 4432 2356666642110
Q ss_pred CCCCCCcEEEeecccHHHHHHHHHHHc
Q 019990 146 PSIPAKNITCLTRLDHNRAMGQISERL 172 (332)
Q Consensus 146 ~~~~~~~i~~~t~l~~~r~~~~~a~~~ 172 (332)
.+.+....|+.++.....+...++..+
T Consensus 142 ~~~~~~~~y~~sk~a~~~~~~~~~~~~ 168 (255)
T TIGR01963 142 VASPFKSAYVAAKHGLIGLTKVLALEV 168 (255)
T ss_pred CCCCCCchhHHHHHHHHHHHHHHHHHh
Confidence 122333356666665555555555543
|
This model represents a subfamily of the short chain dehydrogenases. Characterized members so far as 3-hydroxybutyrate dehydrogenases and are found in species that accumulate ester polmers called polyhydroxyalkanoic acids (PHAs) under certain conditions. Several members of the family are from species not known to accumulate PHAs, including Oceanobacillus iheyensis and Bacillus subtilis. However, polymer formation is not required for there be a role for 3-hydroxybutyrate dehydrogenase; it may be members of this family have the same function in those species. |
| >PRK12826 3-ketoacyl-(acyl-carrier-protein) reductase; Reviewed | Back alignment and domain information |
|---|
Probab=98.52 E-value=5.1e-07 Score=80.13 Aligned_cols=161 Identities=17% Similarity=0.109 Sum_probs=88.6
Q ss_pred CCcEEEEEcCCChhHHHHHHHHHhcccCCCCCCeEEEEEecccchhhhhhhHhhhhhhc--c-CCccceEEeCCHHHHh-
Q 019990 4 NPLRVLVTGAAGQIGYALVPMIARGIMLGPDQPVILHMLDIEPAAEALNGVKMELIDAA--F-PLLKGVVATTDVVEAC- 79 (332)
Q Consensus 4 ~~~kI~VtGaaG~IGs~l~~~L~~~~~~~~~~~~~i~l~D~~~~~~~~~~~~~dl~~~~--~-~~~~~v~~~~~~~~a~- 79 (332)
++++|+||||+|++|++++..|++.|. +|++++++.. .+.....++.... . ....|+....++.+.+
T Consensus 5 ~~~~ilItGasg~iG~~l~~~l~~~g~-------~V~~~~r~~~--~~~~~~~~l~~~~~~~~~~~~Dl~~~~~~~~~~~ 75 (251)
T PRK12826 5 EGRVALVTGAARGIGRAIAVRLAADGA-------EVIVVDICGD--DAAATAELVEAAGGKARARQVDVRDRAALKAAVA 75 (251)
T ss_pred CCCEEEEcCCCCcHHHHHHHHHHHCCC-------EEEEEeCCHH--HHHHHHHHHHhcCCeEEEEECCCCCHHHHHHHHH
Confidence 356899999999999999999998875 7888887532 2222222222110 0 1112443333333333
Q ss_pred ------CCCcEEEEecCCCCC-C--CCCh---hHHHhhhHHHHHHHHHHHHhhc--CCCcEEEEEeCChhhHHHHHHHHC
Q 019990 80 ------KDVNIAVMVGGFPRK-E--GMER---KDVMSKNVSIYKAQASALEKHA--APNCKVLVVANPANTNALILKEFA 145 (332)
Q Consensus 80 ------~~aDiVi~~ag~~~~-~--~~~~---~~~~~~N~~~~~~i~~~i~~~~--~~~~~viv~snp~~~~~~~~~~~~ 145 (332)
..+|+|||++|.... + ..+. .+.+..|+.....+.+.+..+- ....+++++|+-... .
T Consensus 76 ~~~~~~~~~d~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~ii~~ss~~~~------~-- 147 (251)
T PRK12826 76 AGVEDFGRLDILVANAGIFPLTPFAEMDDEQWERVIDVNLTGTFLLTQAALPALIRAGGGRIVLTSSVAGP------R-- 147 (251)
T ss_pred HHHHHhCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCCcEEEEEechHhh------c--
Confidence 368999999976432 1 1222 2346677777766666654221 112356666643211 0
Q ss_pred CCCCCCcEEEeecccHHHHHHHHHHHc---CCCCCCeee
Q 019990 146 PSIPAKNITCLTRLDHNRAMGQISERL---KVHVSDVKN 181 (332)
Q Consensus 146 ~~~~~~~i~~~t~l~~~r~~~~~a~~~---~v~~~~v~~ 181 (332)
.+.+....|+.++.....+...+++.+ |++...+++
T Consensus 148 ~~~~~~~~y~~sK~a~~~~~~~~~~~~~~~~i~~~~i~p 186 (251)
T PRK12826 148 VGYPGLAHYAASKAGLVGFTRALALELAARNITVNSVHP 186 (251)
T ss_pred cCCCCccHHHHHHHHHHHHHHHHHHHHHHcCeEEEEEee
Confidence 122333345666666666666666654 544444443
|
|
| >PF07993 NAD_binding_4: Male sterility protein; InterPro: IPR013120 This family represents the C-terminal NAD-binding region of the male sterility protein from Arabidopsis and Drosophila | Back alignment and domain information |
|---|
Probab=98.52 E-value=1.1e-07 Score=84.94 Aligned_cols=169 Identities=14% Similarity=0.083 Sum_probs=85.1
Q ss_pred EEcCCChhHHHHHHHHHhcccCCCCCCeEEEEEecccchhhhh-hhHhhhhhh----------c---cCCccceEEe---
Q 019990 10 VTGAAGQIGYALVPMIARGIMLGPDQPVILHMLDIEPAAEALN-GVKMELIDA----------A---FPLLKGVVAT--- 72 (332)
Q Consensus 10 VtGaaG~IGs~l~~~L~~~~~~~~~~~~~i~l~D~~~~~~~~~-~~~~dl~~~----------~---~~~~~~v~~~--- 72 (332)
||||+||+|++++..|++.+.. .+|+++-+..+..... .....+.+. . ....+|++..
T Consensus 1 lTGaTGflG~~ll~~Ll~~~~~-----~~I~cLvR~~~~~~~~~rl~~~l~~~~~~~~~~~~~~~ri~~v~GDl~~~~lG 75 (249)
T PF07993_consen 1 LTGATGFLGSHLLEELLRQPPD-----VKIYCLVRASSSQSALERLKDALKEYGLWDDLDKEALSRIEVVEGDLSQPNLG 75 (249)
T ss_dssp EE-TTSHHHHHHHHHHHHHS-T-----TEEEEEE-SSSHHHHHHHHHGGG-SS-HHHHH-HHHTTTEEEEE--TTSGGGG
T ss_pred CcCCCcHHHHHHHHHHHcCCCC-----cEEEEEEeCcccccchhhhhhhcccccchhhhhhhhhccEEEEeccccccccC
Confidence 7999999999999999886531 1677776644221111 111111100 0 0111233211
Q ss_pred --CCHHHH-hCCCcEEEEecCCCCCCCCChhHHHhhhHHHHHHHHHHHHhhcCCCcEEEEEeCCh-hhHHH--H------
Q 019990 73 --TDVVEA-CKDVNIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEKHAAPNCKVLVVANPA-NTNAL--I------ 140 (332)
Q Consensus 73 --~~~~~a-~~~aDiVi~~ag~~~~~~~~~~~~~~~N~~~~~~i~~~i~~~~~~~~~viv~snp~-~~~~~--~------ 140 (332)
.+.++. .+++|+|||+|+.-.- ..+..++...|+.+++++++.+.+.. ..+++.+|+.. ..... .
T Consensus 76 L~~~~~~~L~~~v~~IiH~Aa~v~~-~~~~~~~~~~NV~gt~~ll~la~~~~--~~~~~~iSTa~v~~~~~~~~~~~~~~ 152 (249)
T PF07993_consen 76 LSDEDYQELAEEVDVIIHCAASVNF-NAPYSELRAVNVDGTRNLLRLAAQGK--RKRFHYISTAYVAGSRPGTIEEKVYP 152 (249)
T ss_dssp --HHHHHHHHHH--EEEE--SS-SB-S-S--EEHHHHHHHHHHHHHHHTSSS-----EEEEEEGGGTTS-TTT--SSS-H
T ss_pred CChHHhhccccccceeeecchhhhh-cccchhhhhhHHHHHHHHHHHHHhcc--CcceEEeccccccCCCCCcccccccc
Confidence 112223 3689999999876432 23445578899999999999999653 23667666521 10000 0
Q ss_pred HHHHC--CCCCCCcEEEeecccHHHHHHHHHHHcCCCCCCeeeeEEEe
Q 019990 141 LKEFA--PSIPAKNITCLTRLDHNRAMGQISERLKVHVSDVKNVIIWG 186 (332)
Q Consensus 141 ~~~~~--~~~~~~~i~~~t~l~~~r~~~~~a~~~~v~~~~v~~~~V~G 186 (332)
..+.. .......-|.-+|..++++....++..|++...+|...|+|
T Consensus 153 ~~~~~~~~~~~~~~gY~~SK~~aE~~l~~a~~~~g~p~~I~Rp~~i~g 200 (249)
T PF07993_consen 153 EEEDDLDPPQGFPNGYEQSKWVAERLLREAAQRHGLPVTIYRPGIIVG 200 (249)
T ss_dssp HH--EEE--TTSEE-HHHHHHHHHHHHHHHHHHH---EEEEEE-EEE-
T ss_pred cccccchhhccCCccHHHHHHHHHHHHHHHHhcCCceEEEEecCcccc
Confidence 01100 00111124667899999999998888899999999988877
|
A sequence-related jojoba acyl CoA reductase is also included.; PDB: 4DQV_A. |
| >PRK07453 protochlorophyllide oxidoreductase; Validated | Back alignment and domain information |
|---|
Probab=98.52 E-value=3e-07 Score=85.33 Aligned_cols=161 Identities=13% Similarity=0.054 Sum_probs=89.8
Q ss_pred CCcEEEEEcCCChhHHHHHHHHHhcccCCCCCCeEEEEEecccchhhhhhhHhhhhhh--cc-CCccceEEeCCHHHHhC
Q 019990 4 NPLRVLVTGAAGQIGYALVPMIARGIMLGPDQPVILHMLDIEPAAEALNGVKMELIDA--AF-PLLKGVVATTDVVEACK 80 (332)
Q Consensus 4 ~~~kI~VtGaaG~IGs~l~~~L~~~~~~~~~~~~~i~l~D~~~~~~~~~~~~~dl~~~--~~-~~~~~v~~~~~~~~a~~ 80 (332)
++++|+||||+|+||.+++..|++.|. +|++.+++. +.+.....++... .. ....|+....++.++++
T Consensus 5 ~~k~vlVTGas~gIG~~~a~~L~~~G~-------~V~~~~r~~--~~~~~~~~~l~~~~~~~~~~~~Dl~~~~~v~~~~~ 75 (322)
T PRK07453 5 AKGTVIITGASSGVGLYAAKALAKRGW-------HVIMACRNL--KKAEAAAQELGIPPDSYTIIHIDLGDLDSVRRFVD 75 (322)
T ss_pred CCCEEEEEcCCChHHHHHHHHHHHCCC-------EEEEEECCH--HHHHHHHHHhhccCCceEEEEecCCCHHHHHHHHH
Confidence 567899999999999999999998875 788888753 2333222223111 00 01124433333333332
Q ss_pred -------CCcEEEEecCCCCC----CCCCh---hHHHhhhHHHHHHHHHHHH----hhcCCCcEEEEEeCChhhHHH---
Q 019990 81 -------DVNIAVMVGGFPRK----EGMER---KDVMSKNVSIYKAQASALE----KHAAPNCKVLVVANPANTNAL--- 139 (332)
Q Consensus 81 -------~aDiVi~~ag~~~~----~~~~~---~~~~~~N~~~~~~i~~~i~----~~~~~~~~viv~snp~~~~~~--- 139 (332)
..|++|+.||.... ...+. ...+..|......+.+.+. +......++|++|+-......
T Consensus 76 ~~~~~~~~iD~li~nAg~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~~~~~~riV~vsS~~~~~~~~~~ 155 (322)
T PRK07453 76 DFRALGKPLDALVCNAAVYMPLLKEPLRSPQGYELSMATNHLGHFLLCNLLLEDLKKSPAPDPRLVILGTVTANPKELGG 155 (322)
T ss_pred HHHHhCCCccEEEECCcccCCCCCCCCCCHHHHHHHHhHHHHHHHHHHHHHHHHHHhCCCCCceEEEEcccccCccccCC
Confidence 48999999986321 11222 2346778766655555444 332112467776642110000
Q ss_pred --------HHHHH---------------CCCCCCCcEEEeecccHHHHHHHHHHHcC
Q 019990 140 --------ILKEF---------------APSIPAKNITCLTRLDHNRAMGQISERLK 173 (332)
Q Consensus 140 --------~~~~~---------------~~~~~~~~i~~~t~l~~~r~~~~~a~~~~ 173 (332)
-+... ...+.+...|+.+|+....+...+++.+.
T Consensus 156 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~SK~a~~~~~~~la~~~~ 212 (322)
T PRK07453 156 KIPIPAPADLGDLSGFEAGFKAPISMADGKKFKPGKAYKDSKLCNMLTMRELHRRYH 212 (322)
T ss_pred ccCCCCccchhhhhcchhcccccccccCccCCCccchhhHhHHHHHHHHHHHHHhhc
Confidence 00000 01233445688899988888888888873
|
|
| >PRK06935 2-deoxy-D-gluconate 3-dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=98.52 E-value=9.5e-07 Score=79.11 Aligned_cols=157 Identities=11% Similarity=0.080 Sum_probs=88.1
Q ss_pred CCcEEEEEcCCChhHHHHHHHHHhcccCCCCCCeEEEEEecccchhhhhhhHhhhhhhc--c-CCccceEEeCCHHHHhC
Q 019990 4 NPLRVLVTGAAGQIGYALVPMIARGIMLGPDQPVILHMLDIEPAAEALNGVKMELIDAA--F-PLLKGVVATTDVVEACK 80 (332)
Q Consensus 4 ~~~kI~VtGaaG~IGs~l~~~L~~~~~~~~~~~~~i~l~D~~~~~~~~~~~~~dl~~~~--~-~~~~~v~~~~~~~~a~~ 80 (332)
+.++|+||||+|+||.+++..|++.|. ++.+++++.. .......+.... . .+..|+....+..+.++
T Consensus 14 ~~k~vlItGas~gIG~~ia~~l~~~G~-------~v~~~~~~~~---~~~~~~~~~~~~~~~~~~~~D~~~~~~i~~~~~ 83 (258)
T PRK06935 14 DGKVAIVTGGNTGLGQGYAVALAKAGA-------DIIITTHGTN---WDETRRLIEKEGRKVTFVQVDLTKPESAEKVVK 83 (258)
T ss_pred CCCEEEEeCCCchHHHHHHHHHHHCCC-------EEEEEeCCcH---HHHHHHHHHhcCCceEEEEcCCCCHHHHHHHHH
Confidence 457899999999999999999998875 7888887521 111111121111 0 11234433333333333
Q ss_pred -------CCcEEEEecCCCCC---CCCCh---hHHHhhhHHHHHHHHHHHHhhc--CCCcEEEEEeCChhhHHHHHHHHC
Q 019990 81 -------DVNIAVMVGGFPRK---EGMER---KDVMSKNVSIYKAQASALEKHA--APNCKVLVVANPANTNALILKEFA 145 (332)
Q Consensus 81 -------~aDiVi~~ag~~~~---~~~~~---~~~~~~N~~~~~~i~~~i~~~~--~~~~~viv~snp~~~~~~~~~~~~ 145 (332)
..|++||++|.... ...+. ...+..|+.....+.+.+..+. ....+++++|+....
T Consensus 84 ~~~~~~g~id~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~g~iv~isS~~~~--------- 154 (258)
T PRK06935 84 EALEEFGKIDILVNNAGTIRRAPLLEYKDEDWNAVMDINLNSVYHLSQAVAKVMAKQGSGKIINIASMLSF--------- 154 (258)
T ss_pred HHHHHcCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHhCHHHHHHHHHHHHHHHhcCCeEEEEECCHHhc---------
Confidence 57999999986421 11122 2345566655544444433321 123466766653211
Q ss_pred CCCCCCcEEEeecccHHHHHHHHHHHcCCCCCCeee
Q 019990 146 PSIPAKNITCLTRLDHNRAMGQISERLKVHVSDVKN 181 (332)
Q Consensus 146 ~~~~~~~i~~~t~l~~~r~~~~~a~~~~v~~~~v~~ 181 (332)
.+.+....|+.++.....+.+.+++.++ +..++.
T Consensus 155 ~~~~~~~~Y~asK~a~~~~~~~la~e~~--~~gi~v 188 (258)
T PRK06935 155 QGGKFVPAYTASKHGVAGLTKAFANELA--AYNIQV 188 (258)
T ss_pred cCCCCchhhHHHHHHHHHHHHHHHHHhh--hhCeEE
Confidence 1122223567788877888888888765 445663
|
|
| >TIGR03325 BphB_TodD cis-2,3-dihydrobiphenyl-2,3-diol dehydrogenase | Back alignment and domain information |
|---|
Probab=98.51 E-value=4.6e-07 Score=81.39 Aligned_cols=165 Identities=18% Similarity=0.097 Sum_probs=93.9
Q ss_pred CCCCCcEEEEEcCCChhHHHHHHHHHhcccCCCCCCeEEEEEecccchhhhhhhHhhhhhhccCCccceEEeCCHHHHh-
Q 019990 1 MAKNPLRVLVTGAAGQIGYALVPMIARGIMLGPDQPVILHMLDIEPAAEALNGVKMELIDAAFPLLKGVVATTDVVEAC- 79 (332)
Q Consensus 1 m~~~~~kI~VtGaaG~IGs~l~~~L~~~~~~~~~~~~~i~l~D~~~~~~~~~~~~~dl~~~~~~~~~~v~~~~~~~~a~- 79 (332)
|..+.++++||||+|+||++++..|++.|. +|+++|++. +.+................|+....+..+++
T Consensus 1 m~~~~k~vlItGas~gIG~~ia~~l~~~G~-------~V~~~~r~~--~~~~~l~~~~~~~~~~~~~D~~~~~~~~~~~~ 71 (262)
T TIGR03325 1 MRLKGEVVLVTGGASGLGRAIVDRFVAEGA-------RVAVLDKSA--AGLQELEAAHGDAVVGVEGDVRSLDDHKEAVA 71 (262)
T ss_pred CCcCCcEEEEECCCChHHHHHHHHHHHCCC-------EEEEEeCCH--HHHHHHHhhcCCceEEEEeccCCHHHHHHHHH
Confidence 766778999999999999999999999885 889998753 2222111111000001112333322232322
Q ss_pred ------CCCcEEEEecCCCCC--C--CCCh-------hHHHhhhHHHHHHHHHHHHhhc-CCCcEEEEEeCChhhHHHHH
Q 019990 80 ------KDVNIAVMVGGFPRK--E--GMER-------KDVMSKNVSIYKAQASALEKHA-APNCKVLVVANPANTNALIL 141 (332)
Q Consensus 80 ------~~aDiVi~~ag~~~~--~--~~~~-------~~~~~~N~~~~~~i~~~i~~~~-~~~~~viv~snp~~~~~~~~ 141 (332)
...|++|+.||.... + ..+. ...++.|+.....+++++.++- .....++++++....
T Consensus 72 ~~~~~~g~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~g~iv~~sS~~~~----- 146 (262)
T TIGR03325 72 RCVAAFGKIDCLIPNAGIWDYSTALVDIPDDRIDEAFDEVFHINVKGYLLAVKAALPALVASRGSVIFTISNAGF----- 146 (262)
T ss_pred HHHHHhCCCCEEEECCCCCccCCccccCCchhhhHHHHHhheeecHhHHHHHHHHHHHHhhcCCCEEEEecccee-----
Confidence 467999999986321 1 1111 2346677776666666665431 112345555432211
Q ss_pred HHHCCCCCCCcEEEeecccHHHHHHHHHHHcCCCCCCeeeeEEEec
Q 019990 142 KEFAPSIPAKNITCLTRLDHNRAMGQISERLKVHVSDVKNVIIWGN 187 (332)
Q Consensus 142 ~~~~~~~~~~~i~~~t~l~~~r~~~~~a~~~~v~~~~v~~~~V~G~ 187 (332)
.+.+....|+.+|.....+.+.+++.++ +. +|. +.+-+
T Consensus 147 ----~~~~~~~~Y~~sKaa~~~l~~~la~e~~--~~-irv-n~i~P 184 (262)
T TIGR03325 147 ----YPNGGGPLYTAAKHAVVGLVKELAFELA--PY-VRV-NGVAP 184 (262)
T ss_pred ----cCCCCCchhHHHHHHHHHHHHHHHHhhc--cC-eEE-EEEec
Confidence 1122223578888888888888988876 33 663 33444
|
Members of this family occur as the BphD protein of biphenyl catabolism and as the TodD protein of toluene catabolism. Members catalyze the second step in each pathway and proved interchangeable when tested; the first and fourth enzymes in each pathway confer metabolic specificity. In the context of biphenyl degradation, the enzyme acts as cis-2,3-dihydrobiphenyl-2,3-diol dehydrogenase (EC 1.3.1.56), while in toluene degradation it acts as cis-toluene dihydrodiol dehydrogenase. |
| >PRK06101 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=98.51 E-value=8.8e-07 Score=78.53 Aligned_cols=149 Identities=16% Similarity=0.130 Sum_probs=89.8
Q ss_pred CcEEEEEcCCChhHHHHHHHHHhcccCCCCCCeEEEEEecccchhhhhhhHhhhhhhccCCccceEEeCCHHHHhCC---
Q 019990 5 PLRVLVTGAAGQIGYALVPMIARGIMLGPDQPVILHMLDIEPAAEALNGVKMELIDAAFPLLKGVVATTDVVEACKD--- 81 (332)
Q Consensus 5 ~~kI~VtGaaG~IGs~l~~~L~~~~~~~~~~~~~i~l~D~~~~~~~~~~~~~dl~~~~~~~~~~v~~~~~~~~a~~~--- 81 (332)
|++|+||||+|+||.+++..|+..|. ++.+++++. +.+........+. .....|++...++.++++.
T Consensus 1 ~~~vlItGas~giG~~la~~L~~~G~-------~V~~~~r~~--~~~~~~~~~~~~~-~~~~~D~~~~~~~~~~~~~~~~ 70 (240)
T PRK06101 1 MTAVLITGATSGIGKQLALDYAKQGW-------QVIACGRNQ--SVLDELHTQSANI-FTLAFDVTDHPGTKAALSQLPF 70 (240)
T ss_pred CcEEEEEcCCcHHHHHHHHHHHhCCC-------EEEEEECCH--HHHHHHHHhcCCC-eEEEeeCCCHHHHHHHHHhccc
Confidence 35799999999999999999998875 899999853 2222111111111 1112345444444444443
Q ss_pred -CcEEEEecCCCCCC---CCCh---hHHHhhhHHHHHHHHHHHHhhcCCCcEEEEEeCChhhHHHHHHHHCCCCCCCcEE
Q 019990 82 -VNIAVMVGGFPRKE---GMER---KDVMSKNVSIYKAQASALEKHAAPNCKVLVVANPANTNALILKEFAPSIPAKNIT 154 (332)
Q Consensus 82 -aDiVi~~ag~~~~~---~~~~---~~~~~~N~~~~~~i~~~i~~~~~~~~~viv~snp~~~~~~~~~~~~~~~~~~~i~ 154 (332)
.|.+|+.||..... ..+. ...+..|......+.+.+..+-.+..+++++|+.... .+.+....|
T Consensus 71 ~~d~~i~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~iv~isS~~~~---------~~~~~~~~Y 141 (240)
T PRK06101 71 IPELWIFNAGDCEYMDDGKVDATLMARVFNVNVLGVANCIEGIQPHLSCGHRVVIVGSIASE---------LALPRAEAY 141 (240)
T ss_pred CCCEEEEcCcccccCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCeEEEEechhhc---------cCCCCCchh
Confidence 47888888753211 1122 2357788888888888777642223456666653221 123333468
Q ss_pred EeecccHHHHHHHHHHHc
Q 019990 155 CLTRLDHNRAMGQISERL 172 (332)
Q Consensus 155 ~~t~l~~~r~~~~~a~~~ 172 (332)
+.++.....+...++..+
T Consensus 142 ~asK~a~~~~~~~l~~e~ 159 (240)
T PRK06101 142 GASKAAVAYFARTLQLDL 159 (240)
T ss_pred hHHHHHHHHHHHHHHHHH
Confidence 888888888887777554
|
|
| >PRK06196 oxidoreductase; Provisional | Back alignment and domain information |
|---|
Probab=98.50 E-value=3.3e-07 Score=84.76 Aligned_cols=163 Identities=10% Similarity=0.028 Sum_probs=90.5
Q ss_pred CcEEEEEcCCChhHHHHHHHHHhcccCCCCCCeEEEEEecccchhhhhhhHhhhhhhccCCccceEEeCCHHHHh-----
Q 019990 5 PLRVLVTGAAGQIGYALVPMIARGIMLGPDQPVILHMLDIEPAAEALNGVKMELIDAAFPLLKGVVATTDVVEAC----- 79 (332)
Q Consensus 5 ~~kI~VtGaaG~IGs~l~~~L~~~~~~~~~~~~~i~l~D~~~~~~~~~~~~~dl~~~~~~~~~~v~~~~~~~~a~----- 79 (332)
.++|+||||+|+||++++..|++.|. +|++.+++. +.+.....++... .....|+....++.+++
T Consensus 26 ~k~vlITGasggIG~~~a~~L~~~G~-------~Vv~~~R~~--~~~~~~~~~l~~v-~~~~~Dl~d~~~v~~~~~~~~~ 95 (315)
T PRK06196 26 GKTAIVTGGYSGLGLETTRALAQAGA-------HVIVPARRP--DVAREALAGIDGV-EVVMLDLADLESVRAFAERFLD 95 (315)
T ss_pred CCEEEEeCCCchHHHHHHHHHHHCCC-------EEEEEeCCH--HHHHHHHHHhhhC-eEEEccCCCHHHHHHHHHHHHh
Confidence 46899999999999999999999885 788888753 2222222222211 11123444333333322
Q ss_pred --CCCcEEEEecCCCCCCC----CChhHHHhhhHHH----HHHHHHHHHhhcCCCcEEEEEeCChhhHHHHHHH-H--CC
Q 019990 80 --KDVNIAVMVGGFPRKEG----MERKDVMSKNVSI----YKAQASALEKHAAPNCKVLVVANPANTNALILKE-F--AP 146 (332)
Q Consensus 80 --~~aDiVi~~ag~~~~~~----~~~~~~~~~N~~~----~~~i~~~i~~~~~~~~~viv~snp~~~~~~~~~~-~--~~ 146 (332)
.+.|++||.||....+. ..-+..+..|... ++.+++.+++.+ ..++|++|+........... . ..
T Consensus 96 ~~~~iD~li~nAg~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~ll~~l~~~~--~~~iV~vSS~~~~~~~~~~~~~~~~~ 173 (315)
T PRK06196 96 SGRRIDILINNAGVMACPETRVGDGWEAQFATNHLGHFALVNLLWPALAAGA--GARVVALSSAGHRRSPIRWDDPHFTR 173 (315)
T ss_pred cCCCCCEEEECCCCCCCCCccCCccHHHHHHHhhHHHHHHHHHHHHHHHhcC--CCeEEEECCHHhccCCCCccccCccC
Confidence 46899999998642211 1112345667655 455555555542 35777777532110000000 0 01
Q ss_pred CCCCCcEEEeecccHHHHHHHHHHHcCCCCCCeee
Q 019990 147 SIPAKNITCLTRLDHNRAMGQISERLKVHVSDVKN 181 (332)
Q Consensus 147 ~~~~~~i~~~t~l~~~r~~~~~a~~~~v~~~~v~~ 181 (332)
++++...|+.+|.....+...+++.+. ...|+.
T Consensus 174 ~~~~~~~Y~~SK~a~~~~~~~la~~~~--~~gi~v 206 (315)
T PRK06196 174 GYDKWLAYGQSKTANALFAVHLDKLGK--DQGVRA 206 (315)
T ss_pred CCChHHHHHHHHHHHHHHHHHHHHHhc--CCCcEE
Confidence 223333577788888888888887753 234553
|
|
| >PRK07060 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=98.50 E-value=3.4e-07 Score=81.09 Aligned_cols=148 Identities=20% Similarity=0.172 Sum_probs=86.5
Q ss_pred CcEEEEEcCCChhHHHHHHHHHhcccCCCCCCeEEEEEecccchhhhhhhHhhhhhhccCCccceEEeCCHHHHhC---C
Q 019990 5 PLRVLVTGAAGQIGYALVPMIARGIMLGPDQPVILHMLDIEPAAEALNGVKMELIDAAFPLLKGVVATTDVVEACK---D 81 (332)
Q Consensus 5 ~~kI~VtGaaG~IGs~l~~~L~~~~~~~~~~~~~i~l~D~~~~~~~~~~~~~dl~~~~~~~~~~v~~~~~~~~a~~---~ 81 (332)
.++++||||+|+||++++..|++.+. +|++++++. +.+......+ .. .....|+....++.++++ .
T Consensus 9 ~~~~lItGa~g~iG~~~a~~l~~~g~-------~V~~~~r~~--~~~~~~~~~~-~~-~~~~~D~~~~~~v~~~~~~~~~ 77 (245)
T PRK07060 9 GKSVLVTGASSGIGRACAVALAQRGA-------RVVAAARNA--AALDRLAGET-GC-EPLRLDVGDDAAIRAALAAAGA 77 (245)
T ss_pred CCEEEEeCCcchHHHHHHHHHHHCCC-------EEEEEeCCH--HHHHHHHHHh-CC-eEEEecCCCHHHHHHHHHHhCC
Confidence 47899999999999999999998875 789998753 2222111111 00 011123333333334333 5
Q ss_pred CcEEEEecCCCCCC---CCCh---hHHHhhhHHHHHHHHHHHHhhcC-C--CcEEEEEeCChhhHHHHHHHHCCCCCCCc
Q 019990 82 VNIAVMVGGFPRKE---GMER---KDVMSKNVSIYKAQASALEKHAA-P--NCKVLVVANPANTNALILKEFAPSIPAKN 152 (332)
Q Consensus 82 aDiVi~~ag~~~~~---~~~~---~~~~~~N~~~~~~i~~~i~~~~~-~--~~~viv~snp~~~~~~~~~~~~~~~~~~~ 152 (332)
.|+|||.+|..... ..+. ...+..|+.....+.+++.+... . ..+++++|+.... .+.+...
T Consensus 78 ~d~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~~iv~~sS~~~~---------~~~~~~~ 148 (245)
T PRK07060 78 FDGLVNCAGIASLESALDMTAEGFDRVMAVNARGAALVARHVARAMIAAGRGGSIVNVSSQAAL---------VGLPDHL 148 (245)
T ss_pred CCEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCCcEEEEEccHHHc---------CCCCCCc
Confidence 79999999864311 1122 23455777777777776655421 1 2466666643211 1223333
Q ss_pred EEEeecccHHHHHHHHHHHc
Q 019990 153 ITCLTRLDHNRAMGQISERL 172 (332)
Q Consensus 153 i~~~t~l~~~r~~~~~a~~~ 172 (332)
.|+.++....++...+++.+
T Consensus 149 ~y~~sK~a~~~~~~~~a~~~ 168 (245)
T PRK07060 149 AYCASKAALDAITRVLCVEL 168 (245)
T ss_pred HhHHHHHHHHHHHHHHHHHH
Confidence 56778877788887787765
|
|
| >PRK08265 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=98.50 E-value=1.3e-06 Score=78.56 Aligned_cols=162 Identities=14% Similarity=0.108 Sum_probs=92.4
Q ss_pred CC-CCCcEEEEEcCCChhHHHHHHHHHhcccCCCCCCeEEEEEecccchhhhhhhHhhhhhhccCCccceEEeCCHHHHh
Q 019990 1 MA-KNPLRVLVTGAAGQIGYALVPMIARGIMLGPDQPVILHMLDIEPAAEALNGVKMELIDAAFPLLKGVVATTDVVEAC 79 (332)
Q Consensus 1 m~-~~~~kI~VtGaaG~IGs~l~~~L~~~~~~~~~~~~~i~l~D~~~~~~~~~~~~~dl~~~~~~~~~~v~~~~~~~~a~ 79 (332)
|. .+.++++||||+|.||.+++..|++.|. +|.+.|++. +.+.....++.........|+....++.+++
T Consensus 1 m~~~~~k~vlItGas~gIG~~ia~~l~~~G~-------~V~~~~r~~--~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~ 71 (261)
T PRK08265 1 MIGLAGKVAIVTGGATLIGAAVARALVAAGA-------RVAIVDIDA--DNGAAVAASLGERARFIATDITDDAAIERAV 71 (261)
T ss_pred CCCCCCCEEEEECCCChHHHHHHHHHHHCCC-------EEEEEeCCH--HHHHHHHHHhCCeeEEEEecCCCHHHHHHHH
Confidence 54 2457899999999999999999999885 899999853 2222222122110011123444333333332
Q ss_pred -------CCCcEEEEecCCCCCC--CCChh---HHHhhhHHHHHHHHHHHHhhc-CCCcEEEEEeCChhhHHHHHHHHCC
Q 019990 80 -------KDVNIAVMVGGFPRKE--GMERK---DVMSKNVSIYKAQASALEKHA-APNCKVLVVANPANTNALILKEFAP 146 (332)
Q Consensus 80 -------~~aDiVi~~ag~~~~~--~~~~~---~~~~~N~~~~~~i~~~i~~~~-~~~~~viv~snp~~~~~~~~~~~~~ 146 (332)
...|++||.||..... ..+.. ..+..|+.....+.+.+..+- .+...++++++.... .
T Consensus 72 ~~~~~~~g~id~lv~~ag~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~g~ii~isS~~~~---------~ 142 (261)
T PRK08265 72 ATVVARFGRVDILVNLACTYLDDGLASSRADWLAALDVNLVSAAMLAQAAHPHLARGGGAIVNFTSISAK---------F 142 (261)
T ss_pred HHHHHHhCCCCEEEECCCCCCCCcCcCCHHHHHHHHhHhhHHHHHHHHHHHHHHhcCCcEEEEECchhhc---------c
Confidence 3579999999864221 12222 345567665555555444321 134566666653211 1
Q ss_pred CCCCCcEEEeecccHHHHHHHHHHHcCCCCCCeeee
Q 019990 147 SIPAKNITCLTRLDHNRAMGQISERLKVHVSDVKNV 182 (332)
Q Consensus 147 ~~~~~~i~~~t~l~~~r~~~~~a~~~~v~~~~v~~~ 182 (332)
+.+....|+.+|.....+.+.++..+. +..++..
T Consensus 143 ~~~~~~~Y~asKaa~~~~~~~la~e~~--~~gi~vn 176 (261)
T PRK08265 143 AQTGRWLYPASKAAIRQLTRSMAMDLA--PDGIRVN 176 (261)
T ss_pred CCCCCchhHHHHHHHHHHHHHHHHHhc--ccCEEEE
Confidence 223333677788777788777887764 4567743
|
|
| >PRK06179 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=98.49 E-value=5.9e-07 Score=80.98 Aligned_cols=144 Identities=16% Similarity=0.136 Sum_probs=82.8
Q ss_pred CCcEEEEEcCCChhHHHHHHHHHhcccCCCCCCeEEEEEecccchhhhhhhHhhhhhhccCCccceEEeCCHHHHhC---
Q 019990 4 NPLRVLVTGAAGQIGYALVPMIARGIMLGPDQPVILHMLDIEPAAEALNGVKMELIDAAFPLLKGVVATTDVVEACK--- 80 (332)
Q Consensus 4 ~~~kI~VtGaaG~IGs~l~~~L~~~~~~~~~~~~~i~l~D~~~~~~~~~~~~~dl~~~~~~~~~~v~~~~~~~~a~~--- 80 (332)
++++|+||||+|+||++++..|++.|. +|++.+++.. .... ..+. .....|+....++.++++
T Consensus 3 ~~~~vlVtGasg~iG~~~a~~l~~~g~-------~V~~~~r~~~--~~~~----~~~~-~~~~~D~~d~~~~~~~~~~~~ 68 (270)
T PRK06179 3 NSKVALVTGASSGIGRATAEKLARAGY-------RVFGTSRNPA--RAAP----IPGV-ELLELDVTDDASVQAAVDEVI 68 (270)
T ss_pred CCCEEEEecCCCHHHHHHHHHHHHCCC-------EEEEEeCChh--hccc----cCCC-eeEEeecCCHHHHHHHHHHHH
Confidence 456799999999999999999998875 7888887532 1110 0110 011234444344444443
Q ss_pred ----CCcEEEEecCCCCCCC---CC---hhHHHhhhHHHHHHHHHHH----HhhcCCCcEEEEEeCChhhHHHHHHHHCC
Q 019990 81 ----DVNIAVMVGGFPRKEG---ME---RKDVMSKNVSIYKAQASAL----EKHAAPNCKVLVVANPANTNALILKEFAP 146 (332)
Q Consensus 81 ----~aDiVi~~ag~~~~~~---~~---~~~~~~~N~~~~~~i~~~i----~~~~~~~~~viv~snp~~~~~~~~~~~~~ 146 (332)
..|+||+.||...... .+ -...+..|......+.+.+ ++.+ ..++|++|+.... .
T Consensus 69 ~~~g~~d~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~g~~~~~~~~~~~~~~~~--~~~iv~isS~~~~---------~ 137 (270)
T PRK06179 69 ARAGRIDVLVNNAGVGLAGAAEESSIAQAQALFDTNVFGILRMTRAVLPHMRAQG--SGRIINISSVLGF---------L 137 (270)
T ss_pred HhCCCCCEEEECCCCCCCcCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcC--CceEEEECCcccc---------C
Confidence 4799999998743211 11 1335667766665555554 4432 3466766653221 1
Q ss_pred CCCCCcEEEeecccHHHHHHHHHHHc
Q 019990 147 SIPAKNITCLTRLDHNRAMGQISERL 172 (332)
Q Consensus 147 ~~~~~~i~~~t~l~~~r~~~~~a~~~ 172 (332)
+.+....|+.++.....+...++..+
T Consensus 138 ~~~~~~~Y~~sK~a~~~~~~~l~~el 163 (270)
T PRK06179 138 PAPYMALYAASKHAVEGYSESLDHEV 163 (270)
T ss_pred CCCCccHHHHHHHHHHHHHHHHHHHH
Confidence 12222346666666666666666554
|
|
| >PRK05786 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=98.49 E-value=5.7e-07 Score=79.35 Aligned_cols=155 Identities=13% Similarity=0.154 Sum_probs=82.1
Q ss_pred CCCCCcEEEEEcCCChhHHHHHHHHHhcccCCCCCCeEEEEEecccchhhhhhhHhhhhhh-cc-CCccceEEeCCHHHH
Q 019990 1 MAKNPLRVLVTGAAGQIGYALVPMIARGIMLGPDQPVILHMLDIEPAAEALNGVKMELIDA-AF-PLLKGVVATTDVVEA 78 (332)
Q Consensus 1 m~~~~~kI~VtGaaG~IGs~l~~~L~~~~~~~~~~~~~i~l~D~~~~~~~~~~~~~dl~~~-~~-~~~~~v~~~~~~~~a 78 (332)
|..+.++|+||||+|+||++++..|++.|. +|++++++. +.+.....++.+. .. ....|+....++.+.
T Consensus 1 ~~~~~~~vlItGa~g~iG~~~a~~l~~~G~-------~V~~~~r~~--~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~ 71 (238)
T PRK05786 1 MRLKGKKVAIIGVSEGLGYAVAYFALKEGA-------QVCINSRNE--NKLKRMKKTLSKYGNIHYVVGDVSSTESARNV 71 (238)
T ss_pred CCcCCcEEEEECCCchHHHHHHHHHHHCCC-------EEEEEeCCH--HHHHHHHHHHHhcCCeEEEECCCCCHHHHHHH
Confidence 554567999999999999999999998875 889998753 2222221222211 11 112344333333322
Q ss_pred -------hCCCcEEEEecCCCCCCC-CCh---hHHHhhhHHHHHHHHHHHHhhcCCCcEEEEEeCChhhHHHHHHHHCCC
Q 019990 79 -------CKDVNIAVMVGGFPRKEG-MER---KDVMSKNVSIYKAQASALEKHAAPNCKVLVVANPANTNALILKEFAPS 147 (332)
Q Consensus 79 -------~~~aDiVi~~ag~~~~~~-~~~---~~~~~~N~~~~~~i~~~i~~~~~~~~~viv~snp~~~~~~~~~~~~~~ 147 (332)
+...|.+|+.+|...... .+. ...+..|......+++.+...-.++..++++|+..... ..
T Consensus 72 ~~~~~~~~~~id~ii~~ag~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~iv~~ss~~~~~--------~~ 143 (238)
T PRK05786 72 IEKAAKVLNAIDGLVVTVGGYVEDTVEEFSGLEEMLTNHIKIPLYAVNASLRFLKEGSSIVLVSSMSGIY--------KA 143 (238)
T ss_pred HHHHHHHhCCCCEEEEcCCCcCCCchHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCEEEEEecchhcc--------cC
Confidence 234699999987532111 111 12344555544444444443321234666666543210 11
Q ss_pred CCCCcEEEeecccHHHHHHHHHHHc
Q 019990 148 IPAKNITCLTRLDHNRAMGQISERL 172 (332)
Q Consensus 148 ~~~~~i~~~t~l~~~r~~~~~a~~~ 172 (332)
.++...|+.++.....+...+++.+
T Consensus 144 ~~~~~~Y~~sK~~~~~~~~~~~~~~ 168 (238)
T PRK05786 144 SPDQLSYAVAKAGLAKAVEILASEL 168 (238)
T ss_pred CCCchHHHHHHHHHHHHHHHHHHHH
Confidence 2222345666666666666666665
|
|
| >TIGR01746 Thioester-redct thioester reductase domain | Back alignment and domain information |
|---|
Probab=98.49 E-value=6.1e-07 Score=84.05 Aligned_cols=171 Identities=16% Similarity=0.112 Sum_probs=98.7
Q ss_pred EEEEEcCCChhHHHHHHHHHhcccCCCCCCeEEEEEecccchhh-hhhhHhhhhhh----------cc-CCccceEEe--
Q 019990 7 RVLVTGAAGQIGYALVPMIARGIMLGPDQPVILHMLDIEPAAEA-LNGVKMELIDA----------AF-PLLKGVVAT-- 72 (332)
Q Consensus 7 kI~VtGaaG~IGs~l~~~L~~~~~~~~~~~~~i~l~D~~~~~~~-~~~~~~dl~~~----------~~-~~~~~v~~~-- 72 (332)
+|+||||+||+|++++..|++.+.. .+|+++.+....+. .......+... .. ....++...
T Consensus 1 ~vlvtGatG~lG~~l~~~L~~~g~~-----~~V~~l~R~~~~~~~~~~l~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~ 75 (367)
T TIGR01746 1 TVLLTGATGFLGAYLLEELLRRSTQ-----AKVICLVRAASEEHAMERLREALRSYRLWQEDLARERIEVVAGDLSEPRL 75 (367)
T ss_pred CEEEeccchHHHHHHHHHHHhCCCC-----CEEEEEEccCCHHHHHHHHHHHHHHhCCCCchhhhCCEEEEeCCcCcccC
Confidence 5899999999999999999987631 26888876543110 00110111100 00 011232211
Q ss_pred ----CCHHHHhCCCcEEEEecCCCCCCCCChhHHHhhhHHHHHHHHHHHHhhcCCCcEEEEEeCChhhHHHH----HHHH
Q 019990 73 ----TDVVEACKDVNIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEKHAAPNCKVLVVANPANTNALI----LKEF 144 (332)
Q Consensus 73 ----~~~~~a~~~aDiVi~~ag~~~~~~~~~~~~~~~N~~~~~~i~~~i~~~~~~~~~viv~snp~~~~~~~----~~~~ 144 (332)
.+..+...++|+|||+|+.... ..+..++...|+..+..+++.+.+.. .. +++++|+- ...... ..+.
T Consensus 76 gl~~~~~~~~~~~~d~vih~a~~~~~-~~~~~~~~~~nv~g~~~ll~~a~~~~-~~-~~v~iSS~-~v~~~~~~~~~~~~ 151 (367)
T TIGR01746 76 GLSDAEWERLAENVDTIVHNGALVNW-VYPYSELRAANVLGTREVLRLAASGR-AK-PLHYVSTI-SVLAAIDLSTVTED 151 (367)
T ss_pred CcCHHHHHHHHhhCCEEEeCCcEecc-CCcHHHHhhhhhHHHHHHHHHHhhCC-Cc-eEEEEccc-cccCCcCCCCcccc
Confidence 1233445789999999986432 23345567789999999999998764 22 35665542 111000 0000
Q ss_pred CC----CCCCCcEEEeecccHHHHHHHHHHHcCCCCCCeeeeEEEec
Q 019990 145 AP----SIPAKNITCLTRLDHNRAMGQISERLKVHVSDVKNVIIWGN 187 (332)
Q Consensus 145 ~~----~~~~~~i~~~t~l~~~r~~~~~a~~~~v~~~~v~~~~V~G~ 187 (332)
.. ...+...|+.++...+++....++. |++...+|...|+|+
T Consensus 152 ~~~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~-g~~~~i~Rpg~v~G~ 197 (367)
T TIGR01746 152 DAIVTPPPGLAGGYAQSKWVAELLVREASDR-GLPVTIVRPGRILGN 197 (367)
T ss_pred ccccccccccCCChHHHHHHHHHHHHHHHhc-CCCEEEECCCceeec
Confidence 00 0011124677788777777665554 899999999889996
|
It has been suggested that a NADP-binding motif can be found in the N-terminal portion of this domain that may form a Rossman-type fold. |
| >PRK08628 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=98.49 E-value=1.1e-06 Score=78.68 Aligned_cols=152 Identities=15% Similarity=0.080 Sum_probs=85.6
Q ss_pred CCCcEEEEEcCCChhHHHHHHHHHhcccCCCCCCeEEEEEecccchhhhhhhHhhhhhhc--c-CCccceEEeCCHHHHh
Q 019990 3 KNPLRVLVTGAAGQIGYALVPMIARGIMLGPDQPVILHMLDIEPAAEALNGVKMELIDAA--F-PLLKGVVATTDVVEAC 79 (332)
Q Consensus 3 ~~~~kI~VtGaaG~IGs~l~~~L~~~~~~~~~~~~~i~l~D~~~~~~~~~~~~~dl~~~~--~-~~~~~v~~~~~~~~a~ 79 (332)
...++|+||||+|+||++++..|++.|. ++++++++.. .. ....++.... . ....|+....++.+.+
T Consensus 5 l~~~~ilItGasggiG~~la~~l~~~G~-------~v~~~~r~~~--~~-~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~ 74 (258)
T PRK08628 5 LKDKVVIVTGGASGIGAAISLRLAEEGA-------IPVIFGRSAP--DD-EFAEELRALQPRAEFVQVDLTDDAQCRDAV 74 (258)
T ss_pred cCCCEEEEeCCCChHHHHHHHHHHHcCC-------cEEEEcCChh--hH-HHHHHHHhcCCceEEEEccCCCHHHHHHHH
Confidence 3457899999999999999999998885 6788877542 22 2222332111 0 1123444333333333
Q ss_pred C-------CCcEEEEecCCCCCCC--CCh---hHHHhhhHHHHHHHHHHHHhhc-CCCcEEEEEeCChhhHHHHHHHHCC
Q 019990 80 K-------DVNIAVMVGGFPRKEG--MER---KDVMSKNVSIYKAQASALEKHA-APNCKVLVVANPANTNALILKEFAP 146 (332)
Q Consensus 80 ~-------~aDiVi~~ag~~~~~~--~~~---~~~~~~N~~~~~~i~~~i~~~~-~~~~~viv~snp~~~~~~~~~~~~~ 146 (332)
+ ..|+|||+||...... .+. ...+..|+.....+.+.+.++- ....+++++|+-... .
T Consensus 75 ~~~~~~~~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~iv~~ss~~~~---------~ 145 (258)
T PRK08628 75 EQTVAKFGRIDGLVNNAGVNDGVGLEAGREAFVASLERNLIHYYVMAHYCLPHLKASRGAIVNISSKTAL---------T 145 (258)
T ss_pred HHHHHhcCCCCEEEECCcccCCCcccCCHHHHHHHHhhhhHHHHHHHHHHHHHhhccCcEEEEECCHHhc---------c
Confidence 2 5799999998632211 111 2345667766656655554332 112455665542211 1
Q ss_pred CCCCCcEEEeecccHHHHHHHHHHHcC
Q 019990 147 SIPAKNITCLTRLDHNRAMGQISERLK 173 (332)
Q Consensus 147 ~~~~~~i~~~t~l~~~r~~~~~a~~~~ 173 (332)
+.+....|+.++.....+.+.+++.+.
T Consensus 146 ~~~~~~~Y~~sK~a~~~~~~~l~~e~~ 172 (258)
T PRK08628 146 GQGGTSGYAAAKGAQLALTREWAVALA 172 (258)
T ss_pred CCCCCchhHHHHHHHHHHHHHHHHHHh
Confidence 122333567778777777777776543
|
|
| >PRK08213 gluconate 5-dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=98.48 E-value=2e-06 Score=76.95 Aligned_cols=167 Identities=14% Similarity=0.097 Sum_probs=94.1
Q ss_pred CCcEEEEEcCCChhHHHHHHHHHhcccCCCCCCeEEEEEecccchhhhhhhHhhhhhhc--c-CCccceEEeCCHHHHh-
Q 019990 4 NPLRVLVTGAAGQIGYALVPMIARGIMLGPDQPVILHMLDIEPAAEALNGVKMELIDAA--F-PLLKGVVATTDVVEAC- 79 (332)
Q Consensus 4 ~~~kI~VtGaaG~IGs~l~~~L~~~~~~~~~~~~~i~l~D~~~~~~~~~~~~~dl~~~~--~-~~~~~v~~~~~~~~a~- 79 (332)
+.++|+||||+|+||++++..|++.|. +|++++++. +.+.....++.... . ....|++...++.+.+
T Consensus 11 ~~k~ilItGa~g~IG~~la~~l~~~G~-------~V~~~~r~~--~~~~~~~~~i~~~~~~~~~~~~Dl~d~~~i~~~~~ 81 (259)
T PRK08213 11 SGKTALVTGGSRGLGLQIAEALGEAGA-------RVVLSARKA--EELEEAAAHLEALGIDALWIAADVADEADIERLAE 81 (259)
T ss_pred CCCEEEEECCCchHHHHHHHHHHHcCC-------EEEEEeCCH--HHHHHHHHHHHhcCCeEEEEEccCCCHHHHHHHHH
Confidence 457899999999999999999998875 788888753 22222222222110 0 1123444333332222
Q ss_pred ------CCCcEEEEecCCCCCC---CCCh---hHHHhhhHHHHHHHHHHHHhh---cCCCcEEEEEeCChhhHHHHHHHH
Q 019990 80 ------KDVNIAVMVGGFPRKE---GMER---KDVMSKNVSIYKAQASALEKH---AAPNCKVLVVANPANTNALILKEF 144 (332)
Q Consensus 80 ------~~aDiVi~~ag~~~~~---~~~~---~~~~~~N~~~~~~i~~~i~~~---~~~~~~viv~snp~~~~~~~~~~~ 144 (332)
...|+|||+||..... ..+. .+.++.|+.....+.+++.++ ..+..+++++|+...... .
T Consensus 82 ~~~~~~~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~l~~~~~~~~v~~sS~~~~~~----~- 156 (259)
T PRK08213 82 ETLERFGHVDILVNNAGATWGAPAEDHPVEAWDKVMNLNVRGLFLLSQAVAKRSMIPRGYGRIINVASVAGLGG----N- 156 (259)
T ss_pred HHHHHhCCCCEEEECCCCCCCCChhhCCHHHHHHHHhHHhHHHHHHHHHHHHHHHHhcCCeEEEEECChhhccC----C-
Confidence 3579999999863211 1111 234668888888888877654 112346666665321100 0
Q ss_pred CCCCCCCcEEEeecccHHHHHHHHHHHcCCCCCCeeeeEEEec
Q 019990 145 APSIPAKNITCLTRLDHNRAMGQISERLKVHVSDVKNVIIWGN 187 (332)
Q Consensus 145 ~~~~~~~~i~~~t~l~~~r~~~~~a~~~~v~~~~v~~~~V~G~ 187 (332)
...+++...|+.++.....+...+++.+. +..++. +++.+
T Consensus 157 ~~~~~~~~~Y~~sKa~~~~~~~~~a~~~~--~~gi~v-~~v~P 196 (259)
T PRK08213 157 PPEVMDTIAYNTSKGAVINFTRALAAEWG--PHGIRV-NAIAP 196 (259)
T ss_pred CccccCcchHHHHHHHHHHHHHHHHHHhc--ccCEEE-EEEec
Confidence 00111223456677777777777777664 345664 34454
|
|
| >PRK08264 short chain dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=98.48 E-value=5e-07 Score=79.74 Aligned_cols=151 Identities=21% Similarity=0.148 Sum_probs=87.2
Q ss_pred CCCCCcEEEEEcCCChhHHHHHHHHHhcccCCCCCCeEEEEEecccchhhhhhhHhhhhhhccCCccceEEeCCHHHHh-
Q 019990 1 MAKNPLRVLVTGAAGQIGYALVPMIARGIMLGPDQPVILHMLDIEPAAEALNGVKMELIDAAFPLLKGVVATTDVVEAC- 79 (332)
Q Consensus 1 m~~~~~kI~VtGaaG~IGs~l~~~L~~~~~~~~~~~~~i~l~D~~~~~~~~~~~~~dl~~~~~~~~~~v~~~~~~~~a~- 79 (332)
|+.+.++|+||||+|+||++++..|++.|. .+|.+++++.. .+.. ..........|+....++.+.+
T Consensus 2 ~~~~~~~vlItGgsg~iG~~la~~l~~~G~------~~V~~~~r~~~--~~~~----~~~~~~~~~~D~~~~~~~~~~~~ 69 (238)
T PRK08264 2 MDIKGKVVLVTGANRGIGRAFVEQLLARGA------AKVYAAARDPE--SVTD----LGPRVVPLQLDVTDPASVAAAAE 69 (238)
T ss_pred CCCCCCEEEEECCCchHHHHHHHHHHHCCc------ccEEEEecChh--hhhh----cCCceEEEEecCCCHHHHHHHHH
Confidence 444667899999999999999999998774 16888887532 1211 1000001123343333333333
Q ss_pred --CCCcEEEEecCCCCCC----CCChh---HHHhhhHHHHHHHHHHHHhhc--CCCcEEEEEeCChhhHHHHHHHHCCCC
Q 019990 80 --KDVNIAVMVGGFPRKE----GMERK---DVMSKNVSIYKAQASALEKHA--APNCKVLVVANPANTNALILKEFAPSI 148 (332)
Q Consensus 80 --~~aDiVi~~ag~~~~~----~~~~~---~~~~~N~~~~~~i~~~i~~~~--~~~~~viv~snp~~~~~~~~~~~~~~~ 148 (332)
...|+|||.+|..... ..+.+ ..++.|......+.+.+.... ....+++++|+.... .+.
T Consensus 70 ~~~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~~v~~sS~~~~---------~~~ 140 (238)
T PRK08264 70 AASDVTILVNNAGIFRTGSLLLEGDEDALRAEMETNYFGPLAMARAFAPVLAANGGGAIVNVLSVLSW---------VNF 140 (238)
T ss_pred hcCCCCEEEECCCcCCCCCccccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCEEEEEcChhhc---------cCC
Confidence 3579999999872211 11222 345667777767766654321 123466666653221 123
Q ss_pred CCCcEEEeecccHHHHHHHHHHHc
Q 019990 149 PAKNITCLTRLDHNRAMGQISERL 172 (332)
Q Consensus 149 ~~~~i~~~t~l~~~r~~~~~a~~~ 172 (332)
+....|+.++.....+...+++.+
T Consensus 141 ~~~~~y~~sK~a~~~~~~~l~~~~ 164 (238)
T PRK08264 141 PNLGTYSASKAAAWSLTQALRAEL 164 (238)
T ss_pred CCchHhHHHHHHHHHHHHHHHHHh
Confidence 333456777877777777777765
|
|
| >PRK05993 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=98.48 E-value=8e-07 Score=80.62 Aligned_cols=145 Identities=8% Similarity=0.072 Sum_probs=85.4
Q ss_pred CCcEEEEEcCCChhHHHHHHHHHhcccCCCCCCeEEEEEecccchhhhhhhHhhhhhhcc-CCccceEEeCCHHHHh---
Q 019990 4 NPLRVLVTGAAGQIGYALVPMIARGIMLGPDQPVILHMLDIEPAAEALNGVKMELIDAAF-PLLKGVVATTDVVEAC--- 79 (332)
Q Consensus 4 ~~~kI~VtGaaG~IGs~l~~~L~~~~~~~~~~~~~i~l~D~~~~~~~~~~~~~dl~~~~~-~~~~~v~~~~~~~~a~--- 79 (332)
.+++|+||||+|+||++++..|++.|. +|++.+++. +.+. ++..... ....|++...++.+++
T Consensus 3 ~~k~vlItGasggiG~~la~~l~~~G~-------~Vi~~~r~~--~~~~----~l~~~~~~~~~~Dl~d~~~~~~~~~~~ 69 (277)
T PRK05993 3 MKRSILITGCSSGIGAYCARALQSDGW-------RVFATCRKE--EDVA----ALEAEGLEAFQLDYAEPESIAALVAQV 69 (277)
T ss_pred CCCEEEEeCCCcHHHHHHHHHHHHCCC-------EEEEEECCH--HHHH----HHHHCCceEEEccCCCHHHHHHHHHHH
Confidence 346799999999999999999998875 889998753 2222 1211111 1123444333332222
Q ss_pred -----CCCcEEEEecCCCCCC---CCCh---hHHHhhhHHH----HHHHHHHHHhhcCCCcEEEEEeCChhhHHHHHHHH
Q 019990 80 -----KDVNIAVMVGGFPRKE---GMER---KDVMSKNVSI----YKAQASALEKHAAPNCKVLVVANPANTNALILKEF 144 (332)
Q Consensus 80 -----~~aDiVi~~ag~~~~~---~~~~---~~~~~~N~~~----~~~i~~~i~~~~~~~~~viv~snp~~~~~~~~~~~ 144 (332)
...|+||+.||..... ..+. ...++.|+.. ++.+++.+++.+ ..++|++|+....
T Consensus 70 ~~~~~g~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~l~~~~~~~--~g~iv~isS~~~~-------- 139 (277)
T PRK05993 70 LELSGGRLDALFNNGAYGQPGAVEDLPTEALRAQFEANFFGWHDLTRRVIPVMRKQG--QGRIVQCSSILGL-------- 139 (277)
T ss_pred HHHcCCCccEEEECCCcCCCCCcccCCHHHHHHHHhHHhHHHHHHHHHHHHHHhhcC--CCEEEEECChhhc--------
Confidence 2469999999864321 1222 2356677766 566677776653 3467777653211
Q ss_pred CCCCCCCcEEEeecccHHHHHHHHHHHc
Q 019990 145 APSIPAKNITCLTRLDHNRAMGQISERL 172 (332)
Q Consensus 145 ~~~~~~~~i~~~t~l~~~r~~~~~a~~~ 172 (332)
.+.+....|+.++.....+...++..+
T Consensus 140 -~~~~~~~~Y~asK~a~~~~~~~l~~el 166 (277)
T PRK05993 140 -VPMKYRGAYNASKFAIEGLSLTLRMEL 166 (277)
T ss_pred -CCCCccchHHHHHHHHHHHHHHHHHHh
Confidence 123334467778877777776666543
|
|
| >PRK08263 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=98.48 E-value=5.2e-07 Score=81.70 Aligned_cols=148 Identities=14% Similarity=0.134 Sum_probs=82.2
Q ss_pred CcEEEEEcCCChhHHHHHHHHHhcccCCCCCCeEEEEEecccchhhhhhhHhhhhhhccCCccceEEeCCHHHH------
Q 019990 5 PLRVLVTGAAGQIGYALVPMIARGIMLGPDQPVILHMLDIEPAAEALNGVKMELIDAAFPLLKGVVATTDVVEA------ 78 (332)
Q Consensus 5 ~~kI~VtGaaG~IGs~l~~~L~~~~~~~~~~~~~i~l~D~~~~~~~~~~~~~dl~~~~~~~~~~v~~~~~~~~a------ 78 (332)
+++|+||||+|+||++++..|++.+. +|.+.+++.. .+......+.........|+....++.+.
T Consensus 3 ~k~vlItGasg~iG~~~a~~l~~~g~-------~V~~~~r~~~--~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~ 73 (275)
T PRK08263 3 EKVWFITGASRGFGRAWTEAALERGD-------RVVATARDTA--TLADLAEKYGDRLLPLALDVTDRAAVFAAVETAVE 73 (275)
T ss_pred CCEEEEeCCCChHHHHHHHHHHHCCC-------EEEEEECCHH--HHHHHHHhccCCeeEEEccCCCHHHHHHHHHHHHH
Confidence 35799999999999999999998875 7888887532 22211111110000011233332233222
Q ss_pred -hCCCcEEEEecCCCCCC---CCCh---hHHHhhhHHHHHHHHHH----HHhhcCCCcEEEEEeCChhhHHHHHHHHCCC
Q 019990 79 -CKDVNIAVMVGGFPRKE---GMER---KDVMSKNVSIYKAQASA----LEKHAAPNCKVLVVANPANTNALILKEFAPS 147 (332)
Q Consensus 79 -~~~aDiVi~~ag~~~~~---~~~~---~~~~~~N~~~~~~i~~~----i~~~~~~~~~viv~snp~~~~~~~~~~~~~~ 147 (332)
+...|+|||+||..... ..+. ...++.|+.....+.+. +++.. ..++|++|+.... .+
T Consensus 74 ~~~~~d~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~--~~~iv~vsS~~~~---------~~ 142 (275)
T PRK08263 74 HFGRLDIVVNNAGYGLFGMIEEVTESEARAQIDTNFFGALWVTQAVLPYLREQR--SGHIIQISSIGGI---------SA 142 (275)
T ss_pred HcCCCCEEEECCCCccccccccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcC--CCEEEEEcChhhc---------CC
Confidence 23679999999874321 1122 23566787765555444 44432 2366666642111 12
Q ss_pred CCCCcEEEeecccHHHHHHHHHHHc
Q 019990 148 IPAKNITCLTRLDHNRAMGQISERL 172 (332)
Q Consensus 148 ~~~~~i~~~t~l~~~r~~~~~a~~~ 172 (332)
.+....|+.++.....+...++..+
T Consensus 143 ~~~~~~Y~~sKaa~~~~~~~la~e~ 167 (275)
T PRK08263 143 FPMSGIYHASKWALEGMSEALAQEV 167 (275)
T ss_pred CCCccHHHHHHHHHHHHHHHHHHHh
Confidence 2333356777776666666776664
|
|
| >COG1090 Predicted nucleoside-diphosphate sugar epimerase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.48 E-value=1.5e-06 Score=76.76 Aligned_cols=168 Identities=15% Similarity=0.240 Sum_probs=91.5
Q ss_pred EEEEcCCChhHHHHHHHHHhcccCCCCCCeEEEEEecccchhhhhhhHhhhhhhccCCccceEEeCCHHHHhC-CCcEEE
Q 019990 8 VLVTGAAGQIGYALVPMIARGIMLGPDQPVILHMLDIEPAAEALNGVKMELIDAAFPLLKGVVATTDVVEACK-DVNIAV 86 (332)
Q Consensus 8 I~VtGaaG~IGs~l~~~L~~~~~~~~~~~~~i~l~D~~~~~~~~~~~~~dl~~~~~~~~~~v~~~~~~~~a~~-~aDiVi 86 (332)
|+||||+||||++|+..|...++ +|.++-++... .. .++ + ..+...+.+.+... ++|+||
T Consensus 1 IliTGgTGlIG~~L~~~L~~~gh-------~v~iltR~~~~--~~---~~~-~------~~v~~~~~~~~~~~~~~DavI 61 (297)
T COG1090 1 ILITGGTGLIGRALTARLRKGGH-------QVTILTRRPPK--AS---QNL-H------PNVTLWEGLADALTLGIDAVI 61 (297)
T ss_pred CeEeccccchhHHHHHHHHhCCC-------eEEEEEcCCcc--hh---hhc-C------ccccccchhhhcccCCCCEEE
Confidence 68999999999999999999886 78777765421 11 111 1 11111122333333 799999
Q ss_pred EecCCCC--C-CCCC-hhHHHhhhHHHHHHHHHHHHhhcCCCcEEEEEeCChhhH----HHHHHHHCCCCCCCcEEEeec
Q 019990 87 MVGGFPR--K-EGME-RKDVMSKNVSIYKAQASALEKHAAPNCKVLVVANPANTN----ALILKEFAPSIPAKNITCLTR 158 (332)
Q Consensus 87 ~~ag~~~--~-~~~~-~~~~~~~N~~~~~~i~~~i~~~~~~~~~viv~snp~~~~----~~~~~~~~~~~~~~~i~~~t~ 158 (332)
++||.+- + .... ...+.+.-+..++.+.+.+.+.. ...++++.++-+..- ...+-+. + -+.+-+.+-.-
T Consensus 62 NLAG~~I~~rrWt~~~K~~i~~SRi~~T~~L~e~I~~~~-~~P~~~isaSAvGyYG~~~~~~~tE~-~-~~g~~Fla~lc 138 (297)
T COG1090 62 NLAGEPIAERRWTEKQKEEIRQSRINTTEKLVELIAASE-TKPKVLISASAVGYYGHSGDRVVTEE-S-PPGDDFLAQLC 138 (297)
T ss_pred ECCCCccccccCCHHHHHHHHHHHhHHHHHHHHHHHhcc-CCCcEEEecceEEEecCCCceeeecC-C-CCCCChHHHHH
Confidence 9999752 1 2221 23345555788899999999764 233444444322210 0001110 0 01011111001
Q ss_pred ccHHHHHHHHHHHcCCCCCCeeeeEEEecCC---CceeecccC
Q 019990 159 LDHNRAMGQISERLKVHVSDVKNVIIWGNHS---STQYPDVNH 198 (332)
Q Consensus 159 l~~~r~~~~~a~~~~v~~~~v~~~~V~G~hg---~~~v~~~s~ 198 (332)
.+=++.. .=|+.+|....-+|.-+|+|+.| ..+.|.|+.
T Consensus 139 ~~WE~~a-~~a~~~gtRvvllRtGvVLs~~GGaL~~m~~~fk~ 180 (297)
T COG1090 139 QDWEEEA-LQAQQLGTRVVLLRTGVVLSPDGGALGKMLPLFKL 180 (297)
T ss_pred HHHHHHH-hhhhhcCceEEEEEEEEEecCCCcchhhhcchhhh
Confidence 1111111 22456677777788888899665 467887774
|
|
| >PRK06172 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=98.48 E-value=2.1e-06 Score=76.55 Aligned_cols=157 Identities=15% Similarity=0.061 Sum_probs=90.3
Q ss_pred CCcEEEEEcCCChhHHHHHHHHHhcccCCCCCCeEEEEEecccchhhhhhhHhhhhhhc--c-CCccceEEeCCHHHHhC
Q 019990 4 NPLRVLVTGAAGQIGYALVPMIARGIMLGPDQPVILHMLDIEPAAEALNGVKMELIDAA--F-PLLKGVVATTDVVEACK 80 (332)
Q Consensus 4 ~~~kI~VtGaaG~IGs~l~~~L~~~~~~~~~~~~~i~l~D~~~~~~~~~~~~~dl~~~~--~-~~~~~v~~~~~~~~a~~ 80 (332)
..++|+||||+|+||++++..|++.|. +|++++++. +.+.....++.... . ....|+....++.+.++
T Consensus 6 ~~k~ilItGas~~iG~~ia~~l~~~G~-------~v~~~~r~~--~~~~~~~~~~~~~~~~~~~~~~D~~~~~~i~~~~~ 76 (253)
T PRK06172 6 SGKVALVTGGAAGIGRATALAFAREGA-------KVVVADRDA--AGGEETVALIREAGGEALFVACDVTRDAEVKALVE 76 (253)
T ss_pred CCCEEEEeCCCchHHHHHHHHHHHcCC-------EEEEEeCCH--HHHHHHHHHHHhcCCceEEEEcCCCCHHHHHHHHH
Confidence 457999999999999999999998875 789998764 22333233332211 0 11133333333333332
Q ss_pred -------CCcEEEEecCCCCCC----CCChh---HHHhhhHHHHHHHHH----HHHhhcCCCcEEEEEeCChhhHHHHHH
Q 019990 81 -------DVNIAVMVGGFPRKE----GMERK---DVMSKNVSIYKAQAS----ALEKHAAPNCKVLVVANPANTNALILK 142 (332)
Q Consensus 81 -------~aDiVi~~ag~~~~~----~~~~~---~~~~~N~~~~~~i~~----~i~~~~~~~~~viv~snp~~~~~~~~~ 142 (332)
..|+|||.+|..... ..+.+ ..+..|......+.+ .+.+. ....++++|+....
T Consensus 77 ~~~~~~g~id~li~~ag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~--~~~~ii~~sS~~~~------ 148 (253)
T PRK06172 77 QTIAAYGRLDYAFNNAGIEIEQGRLAEGSEAEFDAIMGVNVKGVWLCMKYQIPLMLAQ--GGGAIVNTASVAGL------ 148 (253)
T ss_pred HHHHHhCCCCEEEECCCCCCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhc--CCcEEEEECchhhc------
Confidence 459999999864221 12222 245667666544443 33332 23456666653211
Q ss_pred HHCCCCCCCcEEEeecccHHHHHHHHHHHcCCCCCCeeee
Q 019990 143 EFAPSIPAKNITCLTRLDHNRAMGQISERLKVHVSDVKNV 182 (332)
Q Consensus 143 ~~~~~~~~~~i~~~t~l~~~r~~~~~a~~~~v~~~~v~~~ 182 (332)
.+.+....|+.++.....+...++..+. +..++..
T Consensus 149 ---~~~~~~~~Y~~sKaa~~~~~~~la~e~~--~~~i~v~ 183 (253)
T PRK06172 149 ---GAAPKMSIYAASKHAVIGLTKSAAIEYA--KKGIRVN 183 (253)
T ss_pred ---cCCCCCchhHHHHHHHHHHHHHHHHHhc--ccCeEEE
Confidence 1233334578888877888888888764 4567643
|
|
| >TIGR03206 benzo_BadH 2-hydroxycyclohexanecarboxyl-CoA dehydrogenase | Back alignment and domain information |
|---|
Probab=98.47 E-value=1.2e-06 Score=77.82 Aligned_cols=150 Identities=15% Similarity=0.124 Sum_probs=84.4
Q ss_pred CcEEEEEcCCChhHHHHHHHHHhcccCCCCCCeEEEEEecccchhhhhhhHhhhhhhc--c-CCccceEEeCCHHHHh--
Q 019990 5 PLRVLVTGAAGQIGYALVPMIARGIMLGPDQPVILHMLDIEPAAEALNGVKMELIDAA--F-PLLKGVVATTDVVEAC-- 79 (332)
Q Consensus 5 ~~kI~VtGaaG~IGs~l~~~L~~~~~~~~~~~~~i~l~D~~~~~~~~~~~~~dl~~~~--~-~~~~~v~~~~~~~~a~-- 79 (332)
+++|+||||+|+||++++..|++.+. +|++++++. +.......++.... . ....|+....++.+++
T Consensus 3 ~~~ilItGas~~iG~~la~~l~~~g~-------~v~~~~r~~--~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~ 73 (250)
T TIGR03206 3 DKTAIVTGGGGGIGGATCRRFAEEGA-------KVAVFDLNR--EAAEKVAADIRAKGGNAQAFACDITDRDSVDTAVAA 73 (250)
T ss_pred CCEEEEeCCCChHHHHHHHHHHHCCC-------EEEEecCCH--HHHHHHHHHHHhcCCcEEEEEcCCCCHHHHHHHHHH
Confidence 56899999999999999999999875 889998754 22222222332211 0 1112333322333332
Q ss_pred -----CCCcEEEEecCCCCCC---CCCh---hHHHhhhHHHHHHHHHHHHhhc--CCCcEEEEEeCChhhHHHHHHHHCC
Q 019990 80 -----KDVNIAVMVGGFPRKE---GMER---KDVMSKNVSIYKAQASALEKHA--APNCKVLVVANPANTNALILKEFAP 146 (332)
Q Consensus 80 -----~~aDiVi~~ag~~~~~---~~~~---~~~~~~N~~~~~~i~~~i~~~~--~~~~~viv~snp~~~~~~~~~~~~~ 146 (332)
...|+|||.+|..... ..+. ...++.|+.....+.+.+..+- .+..+++++++.... .
T Consensus 74 ~~~~~~~~d~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~ii~iss~~~~---------~ 144 (250)
T TIGR03206 74 AEQALGPVDVLVNNAGWDKFGPFTKTEPPLWERLIAINLTGALHMHHAVLPGMVERGAGRIVNIASDAAR---------V 144 (250)
T ss_pred HHHHcCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCeEEEEECchhhc---------c
Confidence 3589999999863211 1122 2246678777766666554321 023466666652111 1
Q ss_pred CCCCCcEEEeecccHHHHHHHHHHHc
Q 019990 147 SIPAKNITCLTRLDHNRAMGQISERL 172 (332)
Q Consensus 147 ~~~~~~i~~~t~l~~~r~~~~~a~~~ 172 (332)
+.+....|+.++.....+.+.+++.+
T Consensus 145 ~~~~~~~Y~~sK~a~~~~~~~la~~~ 170 (250)
T TIGR03206 145 GSSGEAVYAACKGGLVAFSKTMAREH 170 (250)
T ss_pred CCCCCchHHHHHHHHHHHHHHHHHHH
Confidence 22223356667766666666677664
|
Members of this protein family are the enzyme 2-hydroxycyclohexanecarboxyl-CoA dehydrogenase. The enzymatic properties were confirmed experimentally in Rhodopseudomonas palustris; the enzyme is homotetrameric, and not sensitive to oxygen. This enzyme is part of proposed pathway for degradation of benzoyl-CoA to 3-hydroxypimeloyl-CoA that differs from the analogous in Thauera aromatica. It also may occur in degradation of the non-aromatic compound cyclohexane-1-carboxylate. |
| >PRK12825 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=98.47 E-value=8.5e-07 Score=78.36 Aligned_cols=150 Identities=18% Similarity=0.157 Sum_probs=79.4
Q ss_pred CCcEEEEEcCCChhHHHHHHHHHhcccCCCCCCeEEEEEecccchhhhhhhHhhhhhhc--c-CCccceEEeCCHHHHh-
Q 019990 4 NPLRVLVTGAAGQIGYALVPMIARGIMLGPDQPVILHMLDIEPAAEALNGVKMELIDAA--F-PLLKGVVATTDVVEAC- 79 (332)
Q Consensus 4 ~~~kI~VtGaaG~IGs~l~~~L~~~~~~~~~~~~~i~l~D~~~~~~~~~~~~~dl~~~~--~-~~~~~v~~~~~~~~a~- 79 (332)
++++|+||||+|++|++++..|++.+. ++.+...... +.......++.... . ....|+....++.+.+
T Consensus 5 ~~~~vlItGasg~iG~~l~~~l~~~g~-------~v~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~ 76 (249)
T PRK12825 5 MGRVALVTGAARGLGRAIALRLARAGA-------DVVVHYRSDE-EAAEELVEAVEALGRRAQAVQADVTDKAALEAAVA 76 (249)
T ss_pred CCCEEEEeCCCchHHHHHHHHHHHCCC-------eEEEEeCCCH-HHHHHHHHHHHhcCCceEEEECCcCCHHHHHHHHH
Confidence 456899999999999999999999886 6655444321 12221112221110 0 1113343333333322
Q ss_pred ------CCCcEEEEecCCCCCC---CCCh---hHHHhhhHHHHHHHHHHHH----hhcCCCcEEEEEeCChhhHHHHHHH
Q 019990 80 ------KDVNIAVMVGGFPRKE---GMER---KDVMSKNVSIYKAQASALE----KHAAPNCKVLVVANPANTNALILKE 143 (332)
Q Consensus 80 ------~~aDiVi~~ag~~~~~---~~~~---~~~~~~N~~~~~~i~~~i~----~~~~~~~~viv~snp~~~~~~~~~~ 143 (332)
.+.|+|||++|..... +.+. .+.++.|+.....+.+.+. +.+ ..+++++|+-...
T Consensus 77 ~~~~~~~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~--~~~~i~~SS~~~~------- 147 (249)
T PRK12825 77 AAVERFGRIDILVNNAGIFEDKPLADMSDDEWDEVIDVNLSGVFHLLRAVVPPMRKQR--GGRIVNISSVAGL------- 147 (249)
T ss_pred HHHHHcCCCCEEEECCccCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcC--CCEEEEECccccC-------
Confidence 4679999999863221 1122 2345667777766666663 332 2356666642211
Q ss_pred HCCCCCCCcEEEeecccHHHHHHHHHHHc
Q 019990 144 FAPSIPAKNITCLTRLDHNRAMGQISERL 172 (332)
Q Consensus 144 ~~~~~~~~~i~~~t~l~~~r~~~~~a~~~ 172 (332)
.+.+...-|+.++.....+...+++.+
T Consensus 148 --~~~~~~~~y~~sK~~~~~~~~~~~~~~ 174 (249)
T PRK12825 148 --PGWPGRSNYAAAKAGLVGLTKALAREL 174 (249)
T ss_pred --CCCCCchHHHHHHHHHHHHHHHHHHHH
Confidence 112222234455555555666666653
|
|
| >PRK07478 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=98.47 E-value=3.5e-06 Score=75.19 Aligned_cols=160 Identities=14% Similarity=0.127 Sum_probs=93.2
Q ss_pred CCCCCcEEEEEcCCChhHHHHHHHHHhcccCCCCCCeEEEEEecccchhhhhhhHhhhhhhc--c-CCccceEEeCCHHH
Q 019990 1 MAKNPLRVLVTGAAGQIGYALVPMIARGIMLGPDQPVILHMLDIEPAAEALNGVKMELIDAA--F-PLLKGVVATTDVVE 77 (332)
Q Consensus 1 m~~~~~kI~VtGaaG~IGs~l~~~L~~~~~~~~~~~~~i~l~D~~~~~~~~~~~~~dl~~~~--~-~~~~~v~~~~~~~~ 77 (332)
|..+.++++||||+|.||.+++..|++.|. +|.+.+++. +.+.....++.+.. . ....|+....++.+
T Consensus 2 ~~~~~k~~lItGas~giG~~ia~~l~~~G~-------~v~~~~r~~--~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~ 72 (254)
T PRK07478 2 MRLNGKVAIITGASSGIGRAAAKLFAREGA-------KVVVGARRQ--AELDQLVAEIRAEGGEAVALAGDVRDEAYAKA 72 (254)
T ss_pred CCCCCCEEEEeCCCChHHHHHHHHHHHCCC-------EEEEEeCCH--HHHHHHHHHHHhcCCcEEEEEcCCCCHHHHHH
Confidence 334557899999999999999999999885 788888753 23333333332211 0 11124433333333
Q ss_pred Hh-------CCCcEEEEecCCCC--CC--CCCh---hHHHhhhHHHH----HHHHHHHHhhcCCCcEEEEEeCChhhHHH
Q 019990 78 AC-------KDVNIAVMVGGFPR--KE--GMER---KDVMSKNVSIY----KAQASALEKHAAPNCKVLVVANPANTNAL 139 (332)
Q Consensus 78 a~-------~~aDiVi~~ag~~~--~~--~~~~---~~~~~~N~~~~----~~i~~~i~~~~~~~~~viv~snp~~~~~~ 139 (332)
.+ ...|++|+.||... .+ ..+. ...+..|.... +.+++.+.+. ...+++++|+....
T Consensus 73 ~~~~~~~~~~~id~li~~ag~~~~~~~~~~~~~~~~~~~~~~N~~~~~~~~~~~~~~l~~~--~~~~iv~~sS~~~~--- 147 (254)
T PRK07478 73 LVALAVERFGGLDIAFNNAGTLGEMGPVAEMSLEGWRETLATNLTSAFLGAKHQIPAMLAR--GGGSLIFTSTFVGH--- 147 (254)
T ss_pred HHHHHHHhcCCCCEEEECCCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhc--CCceEEEEechHhh---
Confidence 22 36799999998632 11 1222 23466776533 4445555443 23466766653211
Q ss_pred HHHHHCCCCCCCcEEEeecccHHHHHHHHHHHcCCCCCCeee
Q 019990 140 ILKEFAPSIPAKNITCLTRLDHNRAMGQISERLKVHVSDVKN 181 (332)
Q Consensus 140 ~~~~~~~~~~~~~i~~~t~l~~~r~~~~~a~~~~v~~~~v~~ 181 (332)
. .+.+....|+.+|.....+...+++.++ +..|+.
T Consensus 148 ---~--~~~~~~~~Y~~sK~a~~~~~~~la~e~~--~~gi~v 182 (254)
T PRK07478 148 ---T--AGFPGMAAYAASKAGLIGLTQVLAAEYG--AQGIRV 182 (254)
T ss_pred ---c--cCCCCcchhHHHHHHHHHHHHHHHHHHh--hcCEEE
Confidence 0 1233344688888888888888888765 345664
|
|
| >PF03721 UDPG_MGDP_dh_N: UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain; InterPro: IPR001732 The UDP-glucose/GDP-mannose dehydrogenases are a small group of enzymes which possesses the ability to catalyse the NAD-dependent 2-fold oxidation of an alcohol to an acid without the release of an aldehyde intermediate [, ] | Back alignment and domain information |
|---|
Probab=98.46 E-value=2.2e-06 Score=73.11 Aligned_cols=111 Identities=24% Similarity=0.368 Sum_probs=66.8
Q ss_pred cEEEEEcCCChhHHHHHHHHHhcccCCCCCCeEEEEEecccchhhhhhhHhhhhhhccCC--------------ccceEE
Q 019990 6 LRVLVTGAAGQIGYALVPMIARGIMLGPDQPVILHMLDIEPAAEALNGVKMELIDAAFPL--------------LKGVVA 71 (332)
Q Consensus 6 ~kI~VtGaaG~IGs~l~~~L~~~~~~~~~~~~~i~l~D~~~~~~~~~~~~~dl~~~~~~~--------------~~~v~~ 71 (332)
|||+|+| .|++|..+|..|...|+ +|..+|++. ++.. .+.....+. .+++..
T Consensus 1 M~I~ViG-lGyvGl~~A~~lA~~G~-------~V~g~D~~~--~~v~----~l~~g~~p~~E~~l~~ll~~~~~~~~l~~ 66 (185)
T PF03721_consen 1 MKIAVIG-LGYVGLPLAAALAEKGH-------QVIGVDIDE--EKVE----ALNNGELPIYEPGLDELLKENVSAGRLRA 66 (185)
T ss_dssp -EEEEE---STTHHHHHHHHHHTTS-------EEEEE-S-H--HHHH----HHHTTSSSS-CTTHHHHHHHHHHTTSEEE
T ss_pred CEEEEEC-CCcchHHHHHHHHhCCC-------EEEEEeCCh--HHHH----HHhhccccccccchhhhhccccccccchh
Confidence 6899999 89999999999999986 899999864 2222 222221110 257788
Q ss_pred eCCHHHHhCCCcEEEEecCCCCCCCCChhHHHhhhHHHHHHHHHHHHhhcCCCcEEEEEeC-Chhh
Q 019990 72 TTDVVEACKDVNIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEKHAAPNCKVLVVAN-PANT 136 (332)
Q Consensus 72 ~~~~~~a~~~aDiVi~~ag~~~~~~~~~~~~~~~N~~~~~~i~~~i~~~~~~~~~viv~sn-p~~~ 136 (332)
+++..++++++|++|++.+.|...+. ..+...+.+.++.+.++..++..+++=|. |+..
T Consensus 67 t~~~~~ai~~adv~~I~VpTP~~~~~------~~Dls~v~~a~~~i~~~l~~~~lvV~~STvppGt 126 (185)
T PF03721_consen 67 TTDIEEAIKDADVVFICVPTPSDEDG------SPDLSYVESAIESIAPVLRPGDLVVIESTVPPGT 126 (185)
T ss_dssp ESEHHHHHHH-SEEEE----EBETTT------SBETHHHHHHHHHHHHHHCSCEEEEESSSSSTTH
T ss_pred hhhhhhhhhccceEEEecCCCccccC------CccHHHHHHHHHHHHHHHhhcceEEEccEEEEee
Confidence 88888889999999999887754421 12345556666777666544445455443 5543
|
The enzymes have a wide range of functions. In plants UDP-glucose dehydrogenase, 1.1.1.22 from EC, is an important enzyme in the synthesis of hemicellulose and pectin [], which are the components of newly formed cell walls; while in zebrafish UDP-glucose dehydrogenase is required for cardiac valve formation []. In Xanthomonas campestris, a plant pathogen, UDP-glucose dehydrogenase is required for virulence []. GDP-mannose dehydrogenase, 1.1.1.132 from EC, catalyses the formation of GDP-mannuronic acid, which is the monomeric unit from which the exopolysaccharide alginate is formed. Alginate is secreted by a number of bacteria, which include Pseudomonas aeruginosa and Azotobacter vinelandii. In P. aeruginosa, alginate is believed to play an important role in the bacteria's resistance to antibiotics and the host immune response [], while in A. vinelandii it is essential for the encystment process []. This entry represents the N-terminal NAD(+)-binding domain. Structural studies indicate that this domain forms an alpha-beta structure containing the six-stranded parallel beta sheet characteristic of the dinucleotide binding Rossman fold [, ].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 3OJO_A 3OJL_A 1MV8_B 1MUU_A 1MFZ_C 3GG2_D 1DLJ_A 1DLI_A 3G79_B 2Y0E_D .... |
| >PRK07856 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=98.46 E-value=1e-06 Score=78.56 Aligned_cols=149 Identities=10% Similarity=0.020 Sum_probs=89.3
Q ss_pred CCCCCcEEEEEcCCChhHHHHHHHHHhcccCCCCCCeEEEEEecccchhhhhhhHhhhhhhcc-CCccceEEeCCHHHHh
Q 019990 1 MAKNPLRVLVTGAAGQIGYALVPMIARGIMLGPDQPVILHMLDIEPAAEALNGVKMELIDAAF-PLLKGVVATTDVVEAC 79 (332)
Q Consensus 1 m~~~~~kI~VtGaaG~IGs~l~~~L~~~~~~~~~~~~~i~l~D~~~~~~~~~~~~~dl~~~~~-~~~~~v~~~~~~~~a~ 79 (332)
|..+.++++||||+|.||++++..|++.+. +|++++++.. . ....... ....|+....++.+.+
T Consensus 2 ~~~~~k~~lItGas~gIG~~la~~l~~~g~-------~v~~~~r~~~--~------~~~~~~~~~~~~D~~~~~~~~~~~ 66 (252)
T PRK07856 2 LDLTGRVVLVTGGTRGIGAGIARAFLAAGA-------TVVVCGRRAP--E------TVDGRPAEFHAADVRDPDQVAALV 66 (252)
T ss_pred CCCCCCEEEEeCCCchHHHHHHHHHHHCCC-------EEEEEeCChh--h------hhcCCceEEEEccCCCHHHHHHHH
Confidence 445568899999999999999999998875 7888987531 1 0000000 1112333333333333
Q ss_pred -------CCCcEEEEecCCCCC-C--CCCh---hHHHhhhHHHHHHHHHHHHhhc---CCCcEEEEEeCChhhHHHHHHH
Q 019990 80 -------KDVNIAVMVGGFPRK-E--GMER---KDVMSKNVSIYKAQASALEKHA---APNCKVLVVANPANTNALILKE 143 (332)
Q Consensus 80 -------~~aDiVi~~ag~~~~-~--~~~~---~~~~~~N~~~~~~i~~~i~~~~---~~~~~viv~snp~~~~~~~~~~ 143 (332)
...|+|||.||.... + ..+. ...+..|+.....+.+.+..+- ....++|++|+....
T Consensus 67 ~~~~~~~~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~g~ii~isS~~~~------- 139 (252)
T PRK07856 67 DAIVERHGRLDVLVNNAGGSPYALAAEASPRFHEKIVELNLLAPLLVAQAANAVMQQQPGGGSIVNIGSVSGR------- 139 (252)
T ss_pred HHHHHHcCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCCcEEEEEcccccC-------
Confidence 356999999986321 1 1111 2356778777777766654421 122466776653211
Q ss_pred HCCCCCCCcEEEeecccHHHHHHHHHHHcC
Q 019990 144 FAPSIPAKNITCLTRLDHNRAMGQISERLK 173 (332)
Q Consensus 144 ~~~~~~~~~i~~~t~l~~~r~~~~~a~~~~ 173 (332)
.+.+....|+.++.....+...++..++
T Consensus 140 --~~~~~~~~Y~~sK~a~~~l~~~la~e~~ 167 (252)
T PRK07856 140 --RPSPGTAAYGAAKAGLLNLTRSLAVEWA 167 (252)
T ss_pred --CCCCCCchhHHHHHHHHHHHHHHHHHhc
Confidence 1233334678888888888888888776
|
|
| >PRK07666 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=98.45 E-value=2e-06 Score=76.01 Aligned_cols=150 Identities=13% Similarity=0.147 Sum_probs=84.3
Q ss_pred CcEEEEEcCCChhHHHHHHHHHhcccCCCCCCeEEEEEecccchhhhhhhHhhhhhhc--c-CCccceEEeCCHHHHh--
Q 019990 5 PLRVLVTGAAGQIGYALVPMIARGIMLGPDQPVILHMLDIEPAAEALNGVKMELIDAA--F-PLLKGVVATTDVVEAC-- 79 (332)
Q Consensus 5 ~~kI~VtGaaG~IGs~l~~~L~~~~~~~~~~~~~i~l~D~~~~~~~~~~~~~dl~~~~--~-~~~~~v~~~~~~~~a~-- 79 (332)
+++++||||+|++|.+++..|++.|. +|++++++.. .+.....++.... . ....|+....++.+++
T Consensus 7 ~~~vlVtG~sg~iG~~l~~~L~~~G~-------~Vi~~~r~~~--~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~ 77 (239)
T PRK07666 7 GKNALITGAGRGIGRAVAIALAKEGV-------NVGLLARTEE--NLKAVAEEVEAYGVKVVIATADVSDYEEVTAAIEQ 77 (239)
T ss_pred CCEEEEEcCCchHHHHHHHHHHHCCC-------EEEEEeCCHH--HHHHHHHHHHHhCCeEEEEECCCCCHHHHHHHHHH
Confidence 46899999999999999999998885 7999998532 2222222222110 0 1122333333333333
Q ss_pred -----CCCcEEEEecCCCCCC---CCCh---hHHHhhhHHHHHHHHHHHHhhc--CCCcEEEEEeCChhhHHHHHHHHCC
Q 019990 80 -----KDVNIAVMVGGFPRKE---GMER---KDVMSKNVSIYKAQASALEKHA--APNCKVLVVANPANTNALILKEFAP 146 (332)
Q Consensus 80 -----~~aDiVi~~ag~~~~~---~~~~---~~~~~~N~~~~~~i~~~i~~~~--~~~~~viv~snp~~~~~~~~~~~~~ 146 (332)
.++|+|||++|..... +.+. ...++.|+.....+.+.+..+. ....+++++++.... .
T Consensus 78 ~~~~~~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~iv~~ss~~~~---------~ 148 (239)
T PRK07666 78 LKNELGSIDILINNAGISKFGKFLELDPAEWEKIIQVNLMGVYYATRAVLPSMIERQSGDIINISSTAGQ---------K 148 (239)
T ss_pred HHHHcCCccEEEEcCccccCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhCCCcEEEEEcchhhc---------c
Confidence 3789999999864321 1121 2346677776666666554321 112456666654321 1
Q ss_pred CCCCCcEEEeecccHHHHHHHHHHHc
Q 019990 147 SIPAKNITCLTRLDHNRAMGQISERL 172 (332)
Q Consensus 147 ~~~~~~i~~~t~l~~~r~~~~~a~~~ 172 (332)
+.+....|+.++.....+...+++.+
T Consensus 149 ~~~~~~~Y~~sK~a~~~~~~~~a~e~ 174 (239)
T PRK07666 149 GAAVTSAYSASKFGVLGLTESLMQEV 174 (239)
T ss_pred CCCCCcchHHHHHHHHHHHHHHHHHh
Confidence 22333345666665556666666654
|
|
| >PRK08643 acetoin reductase; Validated | Back alignment and domain information |
|---|
Probab=98.45 E-value=4.6e-06 Score=74.46 Aligned_cols=156 Identities=17% Similarity=0.188 Sum_probs=88.1
Q ss_pred cEEEEEcCCChhHHHHHHHHHhcccCCCCCCeEEEEEecccchhhhhhhHhhhhhhc---cCCccceEEeCCHHHHh---
Q 019990 6 LRVLVTGAAGQIGYALVPMIARGIMLGPDQPVILHMLDIEPAAEALNGVKMELIDAA---FPLLKGVVATTDVVEAC--- 79 (332)
Q Consensus 6 ~kI~VtGaaG~IGs~l~~~L~~~~~~~~~~~~~i~l~D~~~~~~~~~~~~~dl~~~~---~~~~~~v~~~~~~~~a~--- 79 (332)
++++||||+|+||++++..|++.|. +++++|++. +.+.....++.+.. .....|+....++.+.+
T Consensus 3 k~~lItGas~giG~~la~~l~~~G~-------~v~~~~r~~--~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~ 73 (256)
T PRK08643 3 KVALVTGAGQGIGFAIAKRLVEDGF-------KVAIVDYNE--ETAQAAADKLSKDGGKAIAVKADVSDRDQVFAAVRQV 73 (256)
T ss_pred CEEEEECCCChHHHHHHHHHHHCCC-------EEEEEeCCH--HHHHHHHHHHHhcCCeEEEEECCCCCHHHHHHHHHHH
Confidence 5799999999999999999998875 889998753 22322222332211 01123444333333322
Q ss_pred ----CCCcEEEEecCCCCC-C--CCCh---hHHHhhhHHHHHHHHHHHHhhc---CCCcEEEEEeCChhhHHHHHHHHCC
Q 019990 80 ----KDVNIAVMVGGFPRK-E--GMER---KDVMSKNVSIYKAQASALEKHA---APNCKVLVVANPANTNALILKEFAP 146 (332)
Q Consensus 80 ----~~aDiVi~~ag~~~~-~--~~~~---~~~~~~N~~~~~~i~~~i~~~~---~~~~~viv~snp~~~~~~~~~~~~~ 146 (332)
.+.|+|||+||.... + ..+. ...+..|+.....+.+.+.++- ..+.+++++|+.... .
T Consensus 74 ~~~~~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~iv~~sS~~~~---------~ 144 (256)
T PRK08643 74 VDTFGDLNVVVNNAGVAPTTPIETITEEQFDKVYNINVGGVIWGIQAAQEAFKKLGHGGKIINATSQAGV---------V 144 (256)
T ss_pred HHHcCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCCCEEEEECccccc---------c
Confidence 368999999986421 1 1111 2345667765544444443321 123566777653221 1
Q ss_pred CCCCCcEEEeecccHHHHHHHHHHHcCCCCCCeee
Q 019990 147 SIPAKNITCLTRLDHNRAMGQISERLKVHVSDVKN 181 (332)
Q Consensus 147 ~~~~~~i~~~t~l~~~r~~~~~a~~~~v~~~~v~~ 181 (332)
+.+....|+.++.....+.+.+++.+ .+..++.
T Consensus 145 ~~~~~~~Y~~sK~a~~~~~~~la~e~--~~~gi~v 177 (256)
T PRK08643 145 GNPELAVYSSTKFAVRGLTQTAARDL--ASEGITV 177 (256)
T ss_pred CCCCCchhHHHHHHHHHHHHHHHHHh--cccCcEE
Confidence 22323357778877777777777765 3445653
|
|
| >PRK12744 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=98.45 E-value=4.2e-06 Score=74.84 Aligned_cols=159 Identities=11% Similarity=0.063 Sum_probs=90.3
Q ss_pred CCcEEEEEcCCChhHHHHHHHHHhcccCCCCCCeEEEEEeccc--chhhhhhhHhhhhhh--cc-CCccceEEeCCHHHH
Q 019990 4 NPLRVLVTGAAGQIGYALVPMIARGIMLGPDQPVILHMLDIEP--AAEALNGVKMELIDA--AF-PLLKGVVATTDVVEA 78 (332)
Q Consensus 4 ~~~kI~VtGaaG~IGs~l~~~L~~~~~~~~~~~~~i~l~D~~~--~~~~~~~~~~dl~~~--~~-~~~~~v~~~~~~~~a 78 (332)
+.++++||||+|+||.+++..|++.|. ++++++.+. ..+.+.....++... .. ....|+....++.+.
T Consensus 7 ~~k~vlItGa~~gIG~~~a~~l~~~G~-------~vv~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~D~~~~~~~~~~ 79 (257)
T PRK12744 7 KGKVVLIAGGAKNLGGLIARDLAAQGA-------KAVAIHYNSAASKADAEETVAAVKAAGAKAVAFQADLTTAAAVEKL 79 (257)
T ss_pred CCcEEEEECCCchHHHHHHHHHHHCCC-------cEEEEecCCccchHHHHHHHHHHHHhCCcEEEEecCcCCHHHHHHH
Confidence 457899999999999999999998875 655555422 111222222222211 11 112344443333333
Q ss_pred h-------CCCcEEEEecCCCCC---CCCCh---hHHHhhhHHHHHHHHHHHHhhcCCCcEEEEE-eCChhhHHHHHHHH
Q 019990 79 C-------KDVNIAVMVGGFPRK---EGMER---KDVMSKNVSIYKAQASALEKHAAPNCKVLVV-ANPANTNALILKEF 144 (332)
Q Consensus 79 ~-------~~aDiVi~~ag~~~~---~~~~~---~~~~~~N~~~~~~i~~~i~~~~~~~~~viv~-snp~~~~~~~~~~~ 144 (332)
+ ...|++||.||.... ...+. ...+..|+.....+++++...-.+...++++ ++....
T Consensus 80 ~~~~~~~~~~id~li~~ag~~~~~~~~~~~~~~~~~~~~~N~~~~~~~~~~~~~~~~~~~~iv~~~ss~~~~-------- 151 (257)
T PRK12744 80 FDDAKAAFGRPDIAINTVGKVLKKPIVEISEAEYDEMFAVNSKSAFFFIKEAGRHLNDNGKIVTLVTSLLGA-------- 151 (257)
T ss_pred HHHHHHhhCCCCEEEECCcccCCCCcccCCHHHHHHHHhhhhhHHHHHHHHHHHhhccCCCEEEEecchhcc--------
Confidence 2 367999999987321 11222 2345678776666666665442223344443 332211
Q ss_pred CCCCCCCcEEEeecccHHHHHHHHHHHcCCCCCCeee
Q 019990 145 APSIPAKNITCLTRLDHNRAMGQISERLKVHVSDVKN 181 (332)
Q Consensus 145 ~~~~~~~~i~~~t~l~~~r~~~~~a~~~~v~~~~v~~ 181 (332)
..+....|+.+|.....+.+.+++.++ +..|+.
T Consensus 152 --~~~~~~~Y~~sK~a~~~~~~~la~e~~--~~~i~v 184 (257)
T PRK12744 152 --FTPFYSAYAGSKAPVEHFTRAASKEFG--ARGISV 184 (257)
T ss_pred --cCCCcccchhhHHHHHHHHHHHHHHhC--cCceEE
Confidence 112233678899999999999998876 345664
|
|
| >PRK07102 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=98.45 E-value=2.6e-06 Score=75.55 Aligned_cols=150 Identities=13% Similarity=0.072 Sum_probs=86.3
Q ss_pred CcEEEEEcCCChhHHHHHHHHHhcccCCCCCCeEEEEEecccchhhhhhhHhhhhhh---cc-CCccceEEeCCHHHHhC
Q 019990 5 PLRVLVTGAAGQIGYALVPMIARGIMLGPDQPVILHMLDIEPAAEALNGVKMELIDA---AF-PLLKGVVATTDVVEACK 80 (332)
Q Consensus 5 ~~kI~VtGaaG~IGs~l~~~L~~~~~~~~~~~~~i~l~D~~~~~~~~~~~~~dl~~~---~~-~~~~~v~~~~~~~~a~~ 80 (332)
|++|+||||+|+||++++..|++.|. +|.++|++. +.......++... .. ....|+....++.+.++
T Consensus 1 ~~~vlItGas~giG~~~a~~l~~~G~-------~Vi~~~r~~--~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~ 71 (243)
T PRK07102 1 MKKILIIGATSDIARACARRYAAAGA-------RLYLAARDV--ERLERLADDLRARGAVAVSTHELDILDTASHAAFLD 71 (243)
T ss_pred CcEEEEEcCCcHHHHHHHHHHHhcCC-------EEEEEeCCH--HHHHHHHHHHHHhcCCeEEEEecCCCChHHHHHHHH
Confidence 46899999999999999999998875 788898864 2232222222211 00 11234444444433332
Q ss_pred ----CCcEEEEecCCCCC---CCCChh---HHHhhhHHHHHHHHHHHHhhc--CCCcEEEEEeCChhhHHHHHHHHCCCC
Q 019990 81 ----DVNIAVMVGGFPRK---EGMERK---DVMSKNVSIYKAQASALEKHA--APNCKVLVVANPANTNALILKEFAPSI 148 (332)
Q Consensus 81 ----~aDiVi~~ag~~~~---~~~~~~---~~~~~N~~~~~~i~~~i~~~~--~~~~~viv~snp~~~~~~~~~~~~~~~ 148 (332)
..|+||+.+|.... .+.+.+ +.++.|......+.+.+..+. .....++++|+.... .+.
T Consensus 72 ~~~~~~d~vv~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~iv~~sS~~~~---------~~~ 142 (243)
T PRK07102 72 SLPALPDIVLIAVGTLGDQAACEADPALALREFRTNFEGPIALLTLLANRFEARGSGTIVGISSVAGD---------RGR 142 (243)
T ss_pred HHhhcCCEEEECCcCCCCcccccCCHHHHHHHHHhhhHHHHHHHHHHHHHHHhCCCCEEEEEeccccc---------CCC
Confidence 46999999886321 112222 346677777666666655431 123466766653211 112
Q ss_pred CCCcEEEeecccHHHHHHHHHHHc
Q 019990 149 PAKNITCLTRLDHNRAMGQISERL 172 (332)
Q Consensus 149 ~~~~i~~~t~l~~~r~~~~~a~~~ 172 (332)
+..-.|+.++.....+...++..+
T Consensus 143 ~~~~~Y~~sK~a~~~~~~~l~~el 166 (243)
T PRK07102 143 ASNYVYGSAKAALTAFLSGLRNRL 166 (243)
T ss_pred CCCcccHHHHHHHHHHHHHHHHHh
Confidence 222357777776666766666654
|
|
| >TIGR01832 kduD 2-deoxy-D-gluconate 3-dehydrogenase | Back alignment and domain information |
|---|
Probab=98.45 E-value=1.5e-06 Score=77.28 Aligned_cols=159 Identities=13% Similarity=0.097 Sum_probs=91.0
Q ss_pred CCCCCcEEEEEcCCChhHHHHHHHHHhcccCCCCCCeEEEEEecccchhhhhhhHhhhhhhc---cCCccceEEeCCHHH
Q 019990 1 MAKNPLRVLVTGAAGQIGYALVPMIARGIMLGPDQPVILHMLDIEPAAEALNGVKMELIDAA---FPLLKGVVATTDVVE 77 (332)
Q Consensus 1 m~~~~~kI~VtGaaG~IGs~l~~~L~~~~~~~~~~~~~i~l~D~~~~~~~~~~~~~dl~~~~---~~~~~~v~~~~~~~~ 77 (332)
|+.+.++|+||||+|+||++++..|++.|. +|++++++.. +.+ ...+.... .....|++...++.+
T Consensus 1 ~~~~~k~vlItGas~gIG~~ia~~l~~~G~-------~vi~~~r~~~-~~~---~~~~~~~~~~~~~~~~D~~~~~~~~~ 69 (248)
T TIGR01832 1 FSLEGKVALVTGANTGLGQGIAVGLAEAGA-------DIVGAGRSEP-SET---QQQVEALGRRFLSLTADLSDIEAIKA 69 (248)
T ss_pred CCCCCCEEEEECCCchHHHHHHHHHHHCCC-------EEEEEcCchH-HHH---HHHHHhcCCceEEEECCCCCHHHHHH
Confidence 455678999999999999999999999886 7888887431 111 11121111 011234433333322
Q ss_pred H-------hCCCcEEEEecCCCCCC---CCCh---hHHHhhhHHHHHHHHHHHHhhc---CCCcEEEEEeCChhhHHHHH
Q 019990 78 A-------CKDVNIAVMVGGFPRKE---GMER---KDVMSKNVSIYKAQASALEKHA---APNCKVLVVANPANTNALIL 141 (332)
Q Consensus 78 a-------~~~aDiVi~~ag~~~~~---~~~~---~~~~~~N~~~~~~i~~~i~~~~---~~~~~viv~snp~~~~~~~~ 141 (332)
. ....|++||.||..... ..+. .+.++.|......+.+.+...- ....+++++|+-.. +
T Consensus 70 ~~~~~~~~~~~~d~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~g~iv~~sS~~~---~-- 144 (248)
T TIGR01832 70 LVDSAVEEFGHIDILVNNAGIIRRADAEEFSEKDWDDVMNVNLKSVFFLTQAAAKHFLKQGRGGKIINIASMLS---F-- 144 (248)
T ss_pred HHHHHHHHcCCCCEEEECCCCCCCCChhhCCHHHHHHHHhhhhHHHHHHHHHHHHHHHhcCCCeEEEEEecHHh---c--
Confidence 2 24689999999874321 1111 2346677766656665554321 11356666664211 1
Q ss_pred HHHCCCCCCCcEEEeecccHHHHHHHHHHHcCCCCCCeee
Q 019990 142 KEFAPSIPAKNITCLTRLDHNRAMGQISERLKVHVSDVKN 181 (332)
Q Consensus 142 ~~~~~~~~~~~i~~~t~l~~~r~~~~~a~~~~v~~~~v~~ 181 (332)
.+.+....|+.++.....+.+.+++.+. +..|+.
T Consensus 145 ----~~~~~~~~Y~~sKaa~~~~~~~la~e~~--~~gi~v 178 (248)
T TIGR01832 145 ----QGGIRVPSYTASKHGVAGLTKLLANEWA--AKGINV 178 (248)
T ss_pred ----cCCCCCchhHHHHHHHHHHHHHHHHHhC--ccCcEE
Confidence 1122233577788877788888888764 344553
|
This model describes 2-deoxy-D-gluconate 3-dehydrogenase (also called 2-keto-3-deoxygluconate oxidoreductase), a member of the family of short-chain-alcohol dehydrogenases (pfam00106). This protein has been characterized in Erwinia chrysanthemi as an enzyme of pectin degradation. |
| >PRK05557 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Validated | Back alignment and domain information |
|---|
Probab=98.45 E-value=1.4e-06 Score=77.02 Aligned_cols=162 Identities=15% Similarity=0.142 Sum_probs=88.7
Q ss_pred CCCCCcEEEEEcCCChhHHHHHHHHHhcccCCCCCCeEEEEEecccchhhhhhhHhhhhhhc--c-CCccceEEeCCHHH
Q 019990 1 MAKNPLRVLVTGAAGQIGYALVPMIARGIMLGPDQPVILHMLDIEPAAEALNGVKMELIDAA--F-PLLKGVVATTDVVE 77 (332)
Q Consensus 1 m~~~~~kI~VtGaaG~IGs~l~~~L~~~~~~~~~~~~~i~l~D~~~~~~~~~~~~~dl~~~~--~-~~~~~v~~~~~~~~ 77 (332)
|..++++|+||||+|++|++++..|++.|. ++++...+.. +.......++.... . ....|+....++.+
T Consensus 1 ~~~~~~~vlItG~sg~iG~~l~~~l~~~G~-------~v~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~ 72 (248)
T PRK05557 1 MSLEGKVALVTGASRGIGRAIAERLAAQGA-------NVVINYASSE-AGAEALVAEIGALGGKALAVQGDVSDAESVER 72 (248)
T ss_pred CCCCCCEEEEECCCchHHHHHHHHHHHCCC-------EEEEEeCCch-hHHHHHHHHHHhcCCceEEEEcCCCCHHHHHH
Confidence 566778999999999999999999998875 6766655432 11222222222110 0 11123333323323
Q ss_pred Hh-------CCCcEEEEecCCCCCC---CCChh---HHHhhhHHHHHHHHHHHHhhcC--CCcEEEEEeCChhhHHHHHH
Q 019990 78 AC-------KDVNIAVMVGGFPRKE---GMERK---DVMSKNVSIYKAQASALEKHAA--PNCKVLVVANPANTNALILK 142 (332)
Q Consensus 78 a~-------~~aDiVi~~ag~~~~~---~~~~~---~~~~~N~~~~~~i~~~i~~~~~--~~~~viv~snp~~~~~~~~~ 142 (332)
++ .+.|+|||++|..... ..+.. ..+..|+.....+.+.+..+.. ...+++++|+....
T Consensus 73 ~~~~~~~~~~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~~v~iss~~~~------ 146 (248)
T PRK05557 73 AVDEAKAEFGGVDILVNNAGITRDNLLMRMKEEDWDRVIDTNLTGVFNLTKAVARPMMKQRSGRIINISSVVGL------ 146 (248)
T ss_pred HHHHHHHHcCCCCEEEECCCcCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCeEEEEEcccccC------
Confidence 22 3689999999864321 11221 2355677777777777765421 12356666643211
Q ss_pred HHCCCCCCCcEEEeecccHHHHHHHHHHHcCCCCCCeee
Q 019990 143 EFAPSIPAKNITCLTRLDHNRAMGQISERLKVHVSDVKN 181 (332)
Q Consensus 143 ~~~~~~~~~~i~~~t~l~~~r~~~~~a~~~~v~~~~v~~ 181 (332)
.+.+....|+.++.....+...+++.+. ...++.
T Consensus 147 ---~~~~~~~~y~~sk~a~~~~~~~~a~~~~--~~~i~~ 180 (248)
T PRK05557 147 ---MGNPGQANYAASKAGVIGFTKSLARELA--SRGITV 180 (248)
T ss_pred ---cCCCCCchhHHHHHHHHHHHHHHHHHhh--hhCeEE
Confidence 1122223456666666666666776653 334553
|
|
| >PRK05565 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=98.45 E-value=1.4e-06 Score=77.07 Aligned_cols=161 Identities=17% Similarity=0.156 Sum_probs=86.5
Q ss_pred CCCCCcEEEEEcCCChhHHHHHHHHHhcccCCCCCCeEEEEE-ecccchhhhhhhHhhhhhhc--c-CCccceEEeCCHH
Q 019990 1 MAKNPLRVLVTGAAGQIGYALVPMIARGIMLGPDQPVILHML-DIEPAAEALNGVKMELIDAA--F-PLLKGVVATTDVV 76 (332)
Q Consensus 1 m~~~~~kI~VtGaaG~IGs~l~~~L~~~~~~~~~~~~~i~l~-D~~~~~~~~~~~~~dl~~~~--~-~~~~~v~~~~~~~ 76 (332)
|...+++|+||||+|+||++++..|++.+. ++++. +++. +........+.... . ....|+....++.
T Consensus 1 ~~~~~~~ilI~Gasg~iG~~la~~l~~~g~-------~v~~~~~r~~--~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~ 71 (247)
T PRK05565 1 MKLMGKVAIVTGASGGIGRAIAELLAKEGA-------KVVIAYDINE--EAAQELLEEIKEEGGDAIAVKADVSSEEDVE 71 (247)
T ss_pred CCCCCCEEEEeCCCcHHHHHHHHHHHHCCC-------EEEEEcCCCH--HHHHHHHHHHHhcCCeEEEEECCCCCHHHHH
Confidence 555677999999999999999999998875 67777 7753 22222222222110 0 1112343333333
Q ss_pred HHhC-------CCcEEEEecCCCCCC---CCCh---hHHHhhhHHHHHHHHHHHHhhcC--CCcEEEEEeCChhhHHHHH
Q 019990 77 EACK-------DVNIAVMVGGFPRKE---GMER---KDVMSKNVSIYKAQASALEKHAA--PNCKVLVVANPANTNALIL 141 (332)
Q Consensus 77 ~a~~-------~aDiVi~~ag~~~~~---~~~~---~~~~~~N~~~~~~i~~~i~~~~~--~~~~viv~snp~~~~~~~~ 141 (332)
+.++ +.|+|||.+|..... ..+. ...+..|......+.+.+..... ...+++++|+....
T Consensus 72 ~~~~~~~~~~~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~~v~~sS~~~~----- 146 (247)
T PRK05565 72 NLVEQIVEKFGKIDILVNNAGISNFGLVTDMTDEEWDRVIDVNLTGVMLLTRYALPYMIKRKSGVIVNISSIWGL----- 146 (247)
T ss_pred HHHHHHHHHhCCCCEEEECCCcCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCcEEEEECCHhhc-----
Confidence 3332 689999999864211 1122 23456677766556555544321 12356666653221
Q ss_pred HHHCCCCCCCcEEEeecccHHHHHHHHHHHcCCCCCCeee
Q 019990 142 KEFAPSIPAKNITCLTRLDHNRAMGQISERLKVHVSDVKN 181 (332)
Q Consensus 142 ~~~~~~~~~~~i~~~t~l~~~r~~~~~a~~~~v~~~~v~~ 181 (332)
.+.+....|+.++.....+...+++.+. ...++.
T Consensus 147 ----~~~~~~~~y~~sK~a~~~~~~~~~~~~~--~~gi~~ 180 (247)
T PRK05565 147 ----IGASCEVLYSASKGAVNAFTKALAKELA--PSGIRV 180 (247)
T ss_pred ----cCCCCccHHHHHHHHHHHHHHHHHHHHH--HcCeEE
Confidence 1112222455566555556566666543 345553
|
|
| >PRK07814 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=98.45 E-value=1.7e-06 Score=77.78 Aligned_cols=152 Identities=13% Similarity=0.032 Sum_probs=90.0
Q ss_pred CCcEEEEEcCCChhHHHHHHHHHhcccCCCCCCeEEEEEecccchhhhhhhHhhhhhhc--cC-CccceEEeCCHHHH--
Q 019990 4 NPLRVLVTGAAGQIGYALVPMIARGIMLGPDQPVILHMLDIEPAAEALNGVKMELIDAA--FP-LLKGVVATTDVVEA-- 78 (332)
Q Consensus 4 ~~~kI~VtGaaG~IGs~l~~~L~~~~~~~~~~~~~i~l~D~~~~~~~~~~~~~dl~~~~--~~-~~~~v~~~~~~~~a-- 78 (332)
+.++++||||+|+||.+++..|++.|. +|++++++. +.+.....++.... .. ...|++...++.++
T Consensus 9 ~~~~vlItGasggIG~~~a~~l~~~G~-------~Vi~~~r~~--~~~~~~~~~l~~~~~~~~~~~~D~~~~~~~~~~~~ 79 (263)
T PRK07814 9 DDQVAVVTGAGRGLGAAIALAFAEAGA-------DVLIAARTE--SQLDEVAEQIRAAGRRAHVVAADLAHPEATAGLAG 79 (263)
T ss_pred CCCEEEEECCCChHHHHHHHHHHHCCC-------EEEEEeCCH--HHHHHHHHHHHhcCCcEEEEEccCCCHHHHHHHHH
Confidence 457899999999999999999998875 899999853 22332222232110 00 11233333233322
Q ss_pred -----hCCCcEEEEecCCCCCC---CCC---hhHHHhhhHHHHHHHHHHHHhhc---CCCcEEEEEeCChhhHHHHHHHH
Q 019990 79 -----CKDVNIAVMVGGFPRKE---GME---RKDVMSKNVSIYKAQASALEKHA---APNCKVLVVANPANTNALILKEF 144 (332)
Q Consensus 79 -----~~~aDiVi~~ag~~~~~---~~~---~~~~~~~N~~~~~~i~~~i~~~~---~~~~~viv~snp~~~~~~~~~~~ 144 (332)
+...|+|||.||..... ..+ ....+..|......+.+.+..+- ....+++++|+....
T Consensus 80 ~~~~~~~~id~vi~~Ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~g~iv~~sS~~~~-------- 151 (263)
T PRK07814 80 QAVEAFGRLDIVVNNVGGTMPNPLLSTSTKDLADAFTFNVATAHALTVAAVPLMLEHSGGGSVINISSTMGR-------- 151 (263)
T ss_pred HHHHHcCCCCEEEECCCCCCCCChhhCCHHHHHHHHHhhcHHHHHHHHHHHHHHHhhcCCeEEEEEcccccc--------
Confidence 23689999999863211 111 12345677777777777665421 123566776653221
Q ss_pred CCCCCCCcEEEeecccHHHHHHHHHHHcC
Q 019990 145 APSIPAKNITCLTRLDHNRAMGQISERLK 173 (332)
Q Consensus 145 ~~~~~~~~i~~~t~l~~~r~~~~~a~~~~ 173 (332)
.+.+....|+.++.....+...++..+.
T Consensus 152 -~~~~~~~~Y~~sK~a~~~~~~~~~~e~~ 179 (263)
T PRK07814 152 -LAGRGFAAYGTAKAALAHYTRLAALDLC 179 (263)
T ss_pred -CCCCCCchhHHHHHHHHHHHHHHHHHHC
Confidence 1223334678888877788888887765
|
|
| >PRK06197 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=98.45 E-value=1.8e-06 Score=79.49 Aligned_cols=159 Identities=13% Similarity=0.056 Sum_probs=90.4
Q ss_pred CCcEEEEEcCCChhHHHHHHHHHhcccCCCCCCeEEEEEecccchhhhhhhHhhhhhh----cc-CCccceEEeCCHHHH
Q 019990 4 NPLRVLVTGAAGQIGYALVPMIARGIMLGPDQPVILHMLDIEPAAEALNGVKMELIDA----AF-PLLKGVVATTDVVEA 78 (332)
Q Consensus 4 ~~~kI~VtGaaG~IGs~l~~~L~~~~~~~~~~~~~i~l~D~~~~~~~~~~~~~dl~~~----~~-~~~~~v~~~~~~~~a 78 (332)
..++|+||||+|+||++++..|++.|. ++++++++. +.......++... .. ....|+....++.++
T Consensus 15 ~~k~vlItGas~gIG~~~a~~l~~~G~-------~vi~~~r~~--~~~~~~~~~l~~~~~~~~~~~~~~Dl~d~~~v~~~ 85 (306)
T PRK06197 15 SGRVAVVTGANTGLGYETAAALAAKGA-------HVVLAVRNL--DKGKAAAARITAATPGADVTLQELDLTSLASVRAA 85 (306)
T ss_pred CCCEEEEcCCCCcHHHHHHHHHHHCCC-------EEEEEeCCH--HHHHHHHHHHHHhCCCCceEEEECCCCCHHHHHHH
Confidence 346899999999999999999998875 788888753 2222222223211 00 112344433333332
Q ss_pred h-------CCCcEEEEecCCCCCCC-C---ChhHHHhhhHHH----HHHHHHHHHhhcCCCcEEEEEeCChhhH-HHH-H
Q 019990 79 C-------KDVNIAVMVGGFPRKEG-M---ERKDVMSKNVSI----YKAQASALEKHAAPNCKVLVVANPANTN-ALI-L 141 (332)
Q Consensus 79 ~-------~~aDiVi~~ag~~~~~~-~---~~~~~~~~N~~~----~~~i~~~i~~~~~~~~~viv~snp~~~~-~~~-~ 141 (332)
+ ...|+|||.||...... . .-...+..|... ++.+++.+++.. ..++|++|+..... ... .
T Consensus 86 ~~~~~~~~~~iD~li~nAg~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~ll~~l~~~~--~~~iV~vSS~~~~~~~~~~~ 163 (306)
T PRK06197 86 ADALRAAYPRIDLLINNAGVMYTPKQTTADGFELQFGTNHLGHFALTGLLLDRLLPVP--GSRVVTVSSGGHRIRAAIHF 163 (306)
T ss_pred HHHHHhhCCCCCEEEECCccccCCCccCCCCcchhhhhhhHHHHHHHHHHHHHHhhCC--CCEEEEECCHHHhccCCCCc
Confidence 2 35899999998632211 1 112346677665 566666666543 35777777532110 000 0
Q ss_pred HHH--CCCCCCCcEEEeecccHHHHHHHHHHHcC
Q 019990 142 KEF--APSIPAKNITCLTRLDHNRAMGQISERLK 173 (332)
Q Consensus 142 ~~~--~~~~~~~~i~~~t~l~~~r~~~~~a~~~~ 173 (332)
... ...+++...|+.+|.....+...+++.+.
T Consensus 164 ~~~~~~~~~~~~~~Y~~SK~a~~~~~~~la~~l~ 197 (306)
T PRK06197 164 DDLQWERRYNRVAAYGQSKLANLLFTYELQRRLA 197 (306)
T ss_pred cccCcccCCCcHHHHHHHHHHHHHHHHHHHHHhh
Confidence 000 01123334578888888888888888875
|
|
| >PRK05876 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=98.44 E-value=8.5e-07 Score=80.46 Aligned_cols=150 Identities=15% Similarity=0.103 Sum_probs=85.9
Q ss_pred CCcEEEEEcCCChhHHHHHHHHHhcccCCCCCCeEEEEEecccchhhhhhhHhhhhhhcc---CCccceEEeCCHHHHh-
Q 019990 4 NPLRVLVTGAAGQIGYALVPMIARGIMLGPDQPVILHMLDIEPAAEALNGVKMELIDAAF---PLLKGVVATTDVVEAC- 79 (332)
Q Consensus 4 ~~~kI~VtGaaG~IGs~l~~~L~~~~~~~~~~~~~i~l~D~~~~~~~~~~~~~dl~~~~~---~~~~~v~~~~~~~~a~- 79 (332)
+.+.++||||+|+||++++..|++.|. +|++.|++. +.+.....++..... ....|++...++.+.+
T Consensus 5 ~~k~vlVTGas~gIG~ala~~La~~G~-------~Vv~~~r~~--~~l~~~~~~l~~~~~~~~~~~~Dv~d~~~v~~~~~ 75 (275)
T PRK05876 5 PGRGAVITGGASGIGLATGTEFARRGA-------RVVLGDVDK--PGLRQAVNHLRAEGFDVHGVMCDVRHREEVTHLAD 75 (275)
T ss_pred CCCEEEEeCCCchHHHHHHHHHHHCCC-------EEEEEeCCH--HHHHHHHHHHHhcCCeEEEEeCCCCCHHHHHHHHH
Confidence 356799999999999999999999885 788998764 233333333322110 1123444433443333
Q ss_pred ------CCCcEEEEecCCCCC---CCCChh---HHHhhhHHHHHHHHHHHH----hhcCCCcEEEEEeCChhhHHHHHHH
Q 019990 80 ------KDVNIAVMVGGFPRK---EGMERK---DVMSKNVSIYKAQASALE----KHAAPNCKVLVVANPANTNALILKE 143 (332)
Q Consensus 80 ------~~aDiVi~~ag~~~~---~~~~~~---~~~~~N~~~~~~i~~~i~----~~~~~~~~viv~snp~~~~~~~~~~ 143 (332)
...|++||.||.... ...+.+ ..++.|+.....+.+.+. +.+ ..++++++|+....
T Consensus 76 ~~~~~~g~id~li~nAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~p~m~~~~-~~g~iv~isS~~~~------- 147 (275)
T PRK05876 76 EAFRLLGHVDVVFSNAGIVVGGPIVEMTHDDWRWVIDVDLWGSIHTVEAFLPRLLEQG-TGGHVVFTASFAGL------- 147 (275)
T ss_pred HHHHHcCCCCEEEECCCcCCCCCcccCCHHHHHHHHhhhhHHHHHHHHHHHHHHHhcC-CCCEEEEeCChhhc-------
Confidence 247999999987421 112222 245677766666555543 332 13466666653211
Q ss_pred HCCCCCCCcEEEeecccHHHHHHHHHHHc
Q 019990 144 FAPSIPAKNITCLTRLDHNRAMGQISERL 172 (332)
Q Consensus 144 ~~~~~~~~~i~~~t~l~~~r~~~~~a~~~ 172 (332)
.+.+....|+.+|.....+...++..+
T Consensus 148 --~~~~~~~~Y~asK~a~~~~~~~l~~e~ 174 (275)
T PRK05876 148 --VPNAGLGAYGVAKYGVVGLAETLAREV 174 (275)
T ss_pred --cCCCCCchHHHHHHHHHHHHHHHHHHh
Confidence 123333456777766555555666554
|
|
| >COG1004 Ugd Predicted UDP-glucose 6-dehydrogenase [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Probab=98.44 E-value=1.1e-05 Score=75.03 Aligned_cols=110 Identities=22% Similarity=0.260 Sum_probs=74.5
Q ss_pred cEEEEEcCCChhHHHHHHHHHhcccCCCCCCeEEEEEecccchhhhhhhHhhhhhhccC------------C--ccceEE
Q 019990 6 LRVLVTGAAGQIGYALVPMIARGIMLGPDQPVILHMLDIEPAAEALNGVKMELIDAAFP------------L--LKGVVA 71 (332)
Q Consensus 6 ~kI~VtGaaG~IGs~l~~~L~~~~~~~~~~~~~i~l~D~~~~~~~~~~~~~dl~~~~~~------------~--~~~v~~ 71 (332)
|||+|+| +|+||...+..|.+.|+ +|+++|++.. +.. .|.....| . .+.+..
T Consensus 1 MkI~viG-tGYVGLv~g~~lA~~GH-------eVv~vDid~~--KV~----~ln~g~~PI~EpgLe~ll~~~~~~gRl~f 66 (414)
T COG1004 1 MKITVIG-TGYVGLVTGACLAELGH-------EVVCVDIDES--KVE----LLNKGISPIYEPGLEELLKENLASGRLRF 66 (414)
T ss_pred CceEEEC-CchHHHHHHHHHHHcCC-------eEEEEeCCHH--HHH----HHhCCCCCCcCccHHHHHHhccccCcEEE
Confidence 6899999 89999999999999886 9999999642 222 22222111 1 134888
Q ss_pred eCCHHHHhCCCcEEEEecCCCCCCCCChhHHHhhhHHHHHHHHHHHHhhcCCCcEEEEEe-CChh
Q 019990 72 TTDVVEACKDVNIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEKHAAPNCKVLVVA-NPAN 135 (332)
Q Consensus 72 ~~~~~~a~~~aDiVi~~ag~~~~~~~~~~~~~~~N~~~~~~i~~~i~~~~~~~~~viv~s-np~~ 135 (332)
++|..++++++|++|++.|.|.++..+ .+...+..+++.+.++-.....+|+=| =|+.
T Consensus 67 Ttd~~~a~~~adv~fIavgTP~~~dg~------aDl~~V~ava~~i~~~~~~~~vvV~KSTVPvG 125 (414)
T COG1004 67 TTDYEEAVKDADVVFIAVGTPPDEDGS------ADLSYVEAVAKDIGEILDGKAVVVIKSTVPVG 125 (414)
T ss_pred EcCHHHHHhcCCEEEEEcCCCCCCCCC------ccHHHHHHHHHHHHhhcCCCeEEEEcCCCCCC
Confidence 899999999999999999988765221 125566677777777642223333333 2554
|
|
| >PRK07825 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=98.44 E-value=1.1e-06 Score=79.42 Aligned_cols=158 Identities=16% Similarity=0.076 Sum_probs=88.7
Q ss_pred CCCCCcEEEEEcCCChhHHHHHHHHHhcccCCCCCCeEEEEEecccchhhhhhhHhhhhhhccCCccceEEeCCHHH---
Q 019990 1 MAKNPLRVLVTGAAGQIGYALVPMIARGIMLGPDQPVILHMLDIEPAAEALNGVKMELIDAAFPLLKGVVATTDVVE--- 77 (332)
Q Consensus 1 m~~~~~kI~VtGaaG~IGs~l~~~L~~~~~~~~~~~~~i~l~D~~~~~~~~~~~~~dl~~~~~~~~~~v~~~~~~~~--- 77 (332)
|+.+.++|+||||+|.||++++..|++.|. .+.+.+++. +.+.....++.... ....|+....++.+
T Consensus 1 ~~~~~~~ilVtGasggiG~~la~~l~~~G~-------~v~~~~r~~--~~~~~~~~~~~~~~-~~~~D~~~~~~~~~~~~ 70 (273)
T PRK07825 1 DDLRGKVVAITGGARGIGLATARALAALGA-------RVAIGDLDE--ALAKETAAELGLVV-GGPLDVTDPASFAAFLD 70 (273)
T ss_pred CCCCCCEEEEeCCCchHHHHHHHHHHHCCC-------EEEEEECCH--HHHHHHHHHhccce-EEEccCCCHHHHHHHHH
Confidence 666778999999999999999999998875 788888753 23332222222110 11224433333222
Q ss_pred ----HhCCCcEEEEecCCCCCC---CCCh---hHHHhhhHHHHHHH----HHHHHhhcCCCcEEEEEeCChhhHHHHHHH
Q 019990 78 ----ACKDVNIAVMVGGFPRKE---GMER---KDVMSKNVSIYKAQ----ASALEKHAAPNCKVLVVANPANTNALILKE 143 (332)
Q Consensus 78 ----a~~~aDiVi~~ag~~~~~---~~~~---~~~~~~N~~~~~~i----~~~i~~~~~~~~~viv~snp~~~~~~~~~~ 143 (332)
.+.+.|++|+.||..... ..+. ...++.|+.....+ ++.+.+.+ ..+++++|+....
T Consensus 71 ~~~~~~~~id~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~g~~~~~~~~~~~~~~~~--~g~iv~isS~~~~------- 141 (273)
T PRK07825 71 AVEADLGPIDVLVNNAGVMPVGPFLDEPDAVTRRILDVNVYGVILGSKLAAPRMVPRG--RGHVVNVASLAGK------- 141 (273)
T ss_pred HHHHHcCCCCEEEECCCcCCCCccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC--CCEEEEEcCcccc-------
Confidence 234679999999874321 1121 23456676554444 44444432 3467777753221
Q ss_pred HCCCCCCCcEEEeecccHHHHHHHHHHHcCCCCCCeee
Q 019990 144 FAPSIPAKNITCLTRLDHNRAMGQISERLKVHVSDVKN 181 (332)
Q Consensus 144 ~~~~~~~~~i~~~t~l~~~r~~~~~a~~~~v~~~~v~~ 181 (332)
.+.+....|+.+|.....+...++..+. +..++.
T Consensus 142 --~~~~~~~~Y~asKaa~~~~~~~l~~el~--~~gi~v 175 (273)
T PRK07825 142 --IPVPGMATYCASKHAVVGFTDAARLELR--GTGVHV 175 (273)
T ss_pred --CCCCCCcchHHHHHHHHHHHHHHHHHhh--ccCcEE
Confidence 1233333567777666666666666543 344553
|
|
| >PRK07985 oxidoreductase; Provisional | Back alignment and domain information |
|---|
Probab=98.44 E-value=8.1e-07 Score=81.43 Aligned_cols=151 Identities=14% Similarity=0.059 Sum_probs=87.3
Q ss_pred cEEEEEcCCChhHHHHHHHHHhcccCCCCCCeEEEEEecccchhhhhhhHhhhhhhc--c-CCccceEEeCCHHH-----
Q 019990 6 LRVLVTGAAGQIGYALVPMIARGIMLGPDQPVILHMLDIEPAAEALNGVKMELIDAA--F-PLLKGVVATTDVVE----- 77 (332)
Q Consensus 6 ~kI~VtGaaG~IGs~l~~~L~~~~~~~~~~~~~i~l~D~~~~~~~~~~~~~dl~~~~--~-~~~~~v~~~~~~~~----- 77 (332)
++++||||+|+||++++..|++.|. +|++.+++...+........+.... . ....|+....++.+
T Consensus 50 k~vlITGas~gIG~aia~~L~~~G~-------~Vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~ 122 (294)
T PRK07985 50 RKALVTGGDSGIGRAAAIAYAREGA-------DVAISYLPVEEEDAQDVKKIIEECGRKAVLLPGDLSDEKFARSLVHEA 122 (294)
T ss_pred CEEEEECCCCcHHHHHHHHHHHCCC-------EEEEecCCcchhhHHHHHHHHHHcCCeEEEEEccCCCHHHHHHHHHHH
Confidence 6899999999999999999999885 7888775432122221111111110 0 11123333222222
Q ss_pred --HhCCCcEEEEecCCCCC----CCCChh---HHHhhhHHHHHHHHHHHHhhcCCCcEEEEEeCChhhHHHHHHHHCCCC
Q 019990 78 --ACKDVNIAVMVGGFPRK----EGMERK---DVMSKNVSIYKAQASALEKHAAPNCKVLVVANPANTNALILKEFAPSI 148 (332)
Q Consensus 78 --a~~~aDiVi~~ag~~~~----~~~~~~---~~~~~N~~~~~~i~~~i~~~~~~~~~viv~snp~~~~~~~~~~~~~~~ 148 (332)
.+...|++||.||.... ...+.. ..++.|+.....+++++..+-...+++|++|+.... .+.
T Consensus 123 ~~~~g~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~m~~~g~iv~iSS~~~~---------~~~ 193 (294)
T PRK07985 123 HKALGGLDIMALVAGKQVAIPDIADLTSEQFQKTFAINVFALFWLTQEAIPLLPKGASIITTSSIQAY---------QPS 193 (294)
T ss_pred HHHhCCCCEEEECCCCCcCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHhhhcCCEEEEECCchhc---------cCC
Confidence 23457999999986321 112222 346778877777777776542234567777753211 122
Q ss_pred CCCcEEEeecccHHHHHHHHHHHc
Q 019990 149 PAKNITCLTRLDHNRAMGQISERL 172 (332)
Q Consensus 149 ~~~~i~~~t~l~~~r~~~~~a~~~ 172 (332)
+....|+.+|.....+...+++.+
T Consensus 194 ~~~~~Y~asKaal~~l~~~la~el 217 (294)
T PRK07985 194 PHLLDYAATKAAILNYSRGLAKQV 217 (294)
T ss_pred CCcchhHHHHHHHHHHHHHHHHHH
Confidence 222357778877777777787775
|
|
| >PRK12747 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=98.44 E-value=5.1e-06 Score=74.05 Aligned_cols=159 Identities=16% Similarity=0.135 Sum_probs=90.1
Q ss_pred CCcEEEEEcCCChhHHHHHHHHHhcccCCCCCCeEEEEEecccchhhhhhhHhhhhhhc---cCCccceEEeCCHH----
Q 019990 4 NPLRVLVTGAAGQIGYALVPMIARGIMLGPDQPVILHMLDIEPAAEALNGVKMELIDAA---FPLLKGVVATTDVV---- 76 (332)
Q Consensus 4 ~~~kI~VtGaaG~IGs~l~~~L~~~~~~~~~~~~~i~l~D~~~~~~~~~~~~~dl~~~~---~~~~~~v~~~~~~~---- 76 (332)
+.++++||||+|+||++++..|++.|. ++.+.+.+.. +.+.....++.... .....|+....+..
T Consensus 3 ~~k~~lItGas~gIG~~ia~~l~~~G~-------~v~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~ 74 (252)
T PRK12747 3 KGKVALVTGASRGIGRAIAKRLANDGA-------LVAIHYGNRK-EEAEETVYEIQSNGGSAFSIGANLESLHGVEALYS 74 (252)
T ss_pred CCCEEEEeCCCChHHHHHHHHHHHCCC-------eEEEEcCCCH-HHHHHHHHHHHhcCCceEEEecccCCHHHHHHHHH
Confidence 456899999999999999999998885 6777653221 22222222332110 00111222211111
Q ss_pred ---HHh------CCCcEEEEecCCCCC---CCCCh---hHHHhhhHHHHHHHHHHHHhhcCCCcEEEEEeCChhhHHHHH
Q 019990 77 ---EAC------KDVNIAVMVGGFPRK---EGMER---KDVMSKNVSIYKAQASALEKHAAPNCKVLVVANPANTNALIL 141 (332)
Q Consensus 77 ---~a~------~~aDiVi~~ag~~~~---~~~~~---~~~~~~N~~~~~~i~~~i~~~~~~~~~viv~snp~~~~~~~~ 141 (332)
+.+ ...|++||.||.... ...+. ...++.|+.....+++++...-...+++|++|+....
T Consensus 75 ~~~~~~~~~~g~~~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~~~~~~~~g~iv~isS~~~~----- 149 (252)
T PRK12747 75 SLDNELQNRTGSTKFDILINNAGIGPGAFIEETTEQFFDRMVSVNAKAPFFIIQQALSRLRDNSRIINISSAATR----- 149 (252)
T ss_pred HHHHHhhhhcCCCCCCEEEECCCcCCCCCcccCCHHHHHHHHHHhhhHHHHHHHHHHHHhhcCCeEEEECCcccc-----
Confidence 111 268999999986321 11222 2345678777766666655442233577777753221
Q ss_pred HHHCCCCCCCcEEEeecccHHHHHHHHHHHcCCCCCCeee
Q 019990 142 KEFAPSIPAKNITCLTRLDHNRAMGQISERLKVHVSDVKN 181 (332)
Q Consensus 142 ~~~~~~~~~~~i~~~t~l~~~r~~~~~a~~~~v~~~~v~~ 181 (332)
.+.+....|+.+|.....+.+.+++.++ +..+|.
T Consensus 150 ----~~~~~~~~Y~~sKaa~~~~~~~la~e~~--~~girv 183 (252)
T PRK12747 150 ----ISLPDFIAYSMTKGAINTMTFTLAKQLG--ARGITV 183 (252)
T ss_pred ----cCCCCchhHHHHHHHHHHHHHHHHHHHh--HcCCEE
Confidence 1223334678888888888888888765 344553
|
|
| >PF13460 NAD_binding_10: NADH(P)-binding ; PDB: 3OH8_A 3E8X_A 3GPI_A 3QVO_A 2Q46_B 1YBM_B 1XQ6_B 2Q4B_B 3EW7_A 3IUS_B | Back alignment and domain information |
|---|
Probab=98.43 E-value=1.1e-06 Score=74.40 Aligned_cols=145 Identities=21% Similarity=0.208 Sum_probs=87.9
Q ss_pred EEEEcCCChhHHHHHHHHHhcccCCCCCCeEEEEEecccchhhhhhhHhhhhhhccCCccceEEeCCHHHHhCCCcEEEE
Q 019990 8 VLVTGAAGQIGYALVPMIARGIMLGPDQPVILHMLDIEPAAEALNGVKMELIDAAFPLLKGVVATTDVVEACKDVNIAVM 87 (332)
Q Consensus 8 I~VtGaaG~IGs~l~~~L~~~~~~~~~~~~~i~l~D~~~~~~~~~~~~~dl~~~~~~~~~~v~~~~~~~~a~~~aDiVi~ 87 (332)
|+|+||+|++|+.++..|++.+. +|+++-++.. ++.. .........++....++.++++++|+||+
T Consensus 1 I~V~GatG~vG~~l~~~L~~~~~-------~V~~~~R~~~--~~~~-----~~~~~~~~~d~~d~~~~~~al~~~d~vi~ 66 (183)
T PF13460_consen 1 ILVFGATGFVGRALAKQLLRRGH-------EVTALVRSPS--KAED-----SPGVEIIQGDLFDPDSVKAALKGADAVIH 66 (183)
T ss_dssp EEEETTTSHHHHHHHHHHHHTTS-------EEEEEESSGG--GHHH-----CTTEEEEESCTTCHHHHHHHHTTSSEEEE
T ss_pred eEEECCCChHHHHHHHHHHHCCC-------EEEEEecCch--hccc-----ccccccceeeehhhhhhhhhhhhcchhhh
Confidence 78999999999999999999885 8888887542 2221 11001112344444567888999999999
Q ss_pred ecCCCCCCCCChhHHHhhhHHHHHHHHHHHHhhcCCCcEEEEEeCChhhHHHHHHHHCCCCCCCcEEE------eecccH
Q 019990 88 VGGFPRKEGMERKDVMSKNVSIYKAQASALEKHAAPNCKVLVVANPANTNALILKEFAPSIPAKNITC------LTRLDH 161 (332)
Q Consensus 88 ~ag~~~~~~~~~~~~~~~N~~~~~~i~~~i~~~~~~~~~viv~snp~~~~~~~~~~~~~~~~~~~i~~------~t~l~~ 161 (332)
++|.+.+ + ...++.+++++++.+ .. ++++.|... . + .-++..... ...+..
T Consensus 67 ~~~~~~~------~-----~~~~~~~~~a~~~~~-~~-~~v~~s~~~-~--~-------~~~~~~~~~~~~~~~~~~~~~ 123 (183)
T PF13460_consen 67 AAGPPPK------D-----VDAAKNIIEAAKKAG-VK-RVVYLSSAG-V--Y-------RDPPGLFSDEDKPIFPEYARD 123 (183)
T ss_dssp CCHSTTT------H-----HHHHHHHHHHHHHTT-SS-EEEEEEETT-G--T-------TTCTSEEEGGTCGGGHHHHHH
T ss_pred hhhhhcc------c-----ccccccccccccccc-cc-cceeeeccc-c--C-------CCCCcccccccccchhhhHHH
Confidence 9875432 1 677889999999875 32 666666421 1 0 001110000 011112
Q ss_pred HHHHHHHHHHcCCCCCCeeeeEEEecCC
Q 019990 162 NRAMGQISERLKVHVSDVKNVIIWGNHS 189 (332)
Q Consensus 162 ~r~~~~~a~~~~v~~~~v~~~~V~G~hg 189 (332)
.+....+.+.-+++...+|+..++|+..
T Consensus 124 ~~~~e~~~~~~~~~~~ivrp~~~~~~~~ 151 (183)
T PF13460_consen 124 KREAEEALRESGLNWTIVRPGWIYGNPS 151 (183)
T ss_dssp HHHHHHHHHHSTSEEEEEEESEEEBTTS
T ss_pred HHHHHHHHHhcCCCEEEEECcEeEeCCC
Confidence 2222222344588888899888888753
|
... |
| >PRK12827 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=98.43 E-value=2e-06 Score=76.15 Aligned_cols=153 Identities=19% Similarity=0.185 Sum_probs=84.6
Q ss_pred CCcEEEEEcCCChhHHHHHHHHHhcccCCCCCCeEEEEEecccc--hhhhhhhHhhhhhh--cc-CCccceEEeCCHHHH
Q 019990 4 NPLRVLVTGAAGQIGYALVPMIARGIMLGPDQPVILHMLDIEPA--AEALNGVKMELIDA--AF-PLLKGVVATTDVVEA 78 (332)
Q Consensus 4 ~~~kI~VtGaaG~IGs~l~~~L~~~~~~~~~~~~~i~l~D~~~~--~~~~~~~~~dl~~~--~~-~~~~~v~~~~~~~~a 78 (332)
++++|+||||+|+||++++..|++.+. ++++++.... .+.......++... .+ ....|+....++.+.
T Consensus 5 ~~~~ilItGasg~iG~~la~~l~~~g~-------~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~ 77 (249)
T PRK12827 5 DSRRVLITGGSGGLGRAIAVRLAADGA-------DVIVLDIHPMRGRAEADAVAAGIEAAGGKALGLAFDVRDFAATRAA 77 (249)
T ss_pred CCCEEEEECCCChHHHHHHHHHHHCCC-------eEEEEcCcccccHHHHHHHHHHHHhcCCcEEEEEccCCCHHHHHHH
Confidence 357899999999999999999998875 7888775321 11121111122111 00 011233333333333
Q ss_pred h-------CCCcEEEEecCCCCCC---CCCh---hHHHhhhHHHHHHHHHHHH-hh--cCCCcEEEEEeCChhhHHHHHH
Q 019990 79 C-------KDVNIAVMVGGFPRKE---GMER---KDVMSKNVSIYKAQASALE-KH--AAPNCKVLVVANPANTNALILK 142 (332)
Q Consensus 79 ~-------~~aDiVi~~ag~~~~~---~~~~---~~~~~~N~~~~~~i~~~i~-~~--~~~~~~viv~snp~~~~~~~~~ 142 (332)
+ ...|+|||.+|..... ..+. ...+..|......+++.+. .. .....+++++|+....
T Consensus 78 ~~~~~~~~~~~d~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~~iv~~sS~~~~------ 151 (249)
T PRK12827 78 LDAGVEEFGRLDILVNNAGIATDAAFAELSIEEWDDVIDVNLDGFFNVTQAALPPMIRARRGGRIVNIASVAGV------ 151 (249)
T ss_pred HHHHHHHhCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHhhhHHHHHHHHHHHHHHhcCCCeEEEEECCchhc------
Confidence 2 3589999999874311 1121 2345778888888887776 21 0112356666653221
Q ss_pred HHCCCCCCCcEEEeecccHHHHHHHHHHHc
Q 019990 143 EFAPSIPAKNITCLTRLDHNRAMGQISERL 172 (332)
Q Consensus 143 ~~~~~~~~~~i~~~t~l~~~r~~~~~a~~~ 172 (332)
.+.+....|+.++.....+...+++.+
T Consensus 152 ---~~~~~~~~y~~sK~a~~~~~~~l~~~~ 178 (249)
T PRK12827 152 ---RGNRGQVNYAASKAGLIGLTKTLANEL 178 (249)
T ss_pred ---CCCCCCchhHHHHHHHHHHHHHHHHHh
Confidence 122333356777765556666666654
|
|
| >PRK12384 sorbitol-6-phosphate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=98.43 E-value=1.5e-06 Score=77.85 Aligned_cols=148 Identities=11% Similarity=0.109 Sum_probs=82.0
Q ss_pred cEEEEEcCCChhHHHHHHHHHhcccCCCCCCeEEEEEecccchhhhhhhHhhhhhh----cc-CCccceEEeCCHHHHh-
Q 019990 6 LRVLVTGAAGQIGYALVPMIARGIMLGPDQPVILHMLDIEPAAEALNGVKMELIDA----AF-PLLKGVVATTDVVEAC- 79 (332)
Q Consensus 6 ~kI~VtGaaG~IGs~l~~~L~~~~~~~~~~~~~i~l~D~~~~~~~~~~~~~dl~~~----~~-~~~~~v~~~~~~~~a~- 79 (332)
++|+||||+|+||++++..|++.+. +|+++|++.. .+.....++... .. ....|++...++.+++
T Consensus 3 k~ilItG~~~~IG~~la~~l~~~g~-------~vi~~~r~~~--~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~i~~~~~ 73 (259)
T PRK12384 3 QVAVVIGGGQTLGAFLCHGLAEEGY-------RVAVADINSE--KAANVAQEINAEYGEGMAYGFGADATSEQSVLALSR 73 (259)
T ss_pred CEEEEECCCcHHHHHHHHHHHHCCC-------EEEEEECCHH--HHHHHHHHHHHhcCCceeEEEEccCCCHHHHHHHHH
Confidence 5699999999999999999998875 8999997532 222222222211 00 1112333322333222
Q ss_pred ------CCCcEEEEecCCCCCC---CCChh---HHHhhhHHHHHHHHHHH----HhhcCCCcEEEEEeCChhhHHHHHHH
Q 019990 80 ------KDVNIAVMVGGFPRKE---GMERK---DVMSKNVSIYKAQASAL----EKHAAPNCKVLVVANPANTNALILKE 143 (332)
Q Consensus 80 ------~~aDiVi~~ag~~~~~---~~~~~---~~~~~N~~~~~~i~~~i----~~~~~~~~~viv~snp~~~~~~~~~~ 143 (332)
...|+|||+||..... ..+.. ..++.|+.....+++.+ .+.. ...+++++|+....
T Consensus 74 ~~~~~~~~id~vv~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~l~~~~-~~~~iv~~ss~~~~------- 145 (259)
T PRK12384 74 GVDEIFGRVDLLVYNAGIAKAAFITDFQLGDFDRSLQVNLVGYFLCAREFSRLMIRDG-IQGRIIQINSKSGK------- 145 (259)
T ss_pred HHHHHcCCCCEEEECCCcCCCCCcccCCHHHHHHHHHhccHHHHHHHHHHHHHHHhCC-CCcEEEEecCcccc-------
Confidence 3579999999864321 12222 23466776644444444 3332 23466666653211
Q ss_pred HCCCCCCCcEEEeecccHHHHHHHHHHHc
Q 019990 144 FAPSIPAKNITCLTRLDHNRAMGQISERL 172 (332)
Q Consensus 144 ~~~~~~~~~i~~~t~l~~~r~~~~~a~~~ 172 (332)
.+.+....|+.+|.....+...+++.+
T Consensus 146 --~~~~~~~~Y~~sKaa~~~l~~~la~e~ 172 (259)
T PRK12384 146 --VGSKHNSGYSAAKFGGVGLTQSLALDL 172 (259)
T ss_pred --cCCCCCchhHHHHHHHHHHHHHHHHHH
Confidence 111222356777777666666666543
|
|
| >PRK12935 acetoacetyl-CoA reductase; Provisional | Back alignment and domain information |
|---|
Probab=98.43 E-value=2e-06 Score=76.28 Aligned_cols=159 Identities=18% Similarity=0.137 Sum_probs=87.8
Q ss_pred CCcEEEEEcCCChhHHHHHHHHHhcccCCCCCCeEEEEEecccchhhhhhhHhhhhhhc--c-CCccceEEeCCHHHHhC
Q 019990 4 NPLRVLVTGAAGQIGYALVPMIARGIMLGPDQPVILHMLDIEPAAEALNGVKMELIDAA--F-PLLKGVVATTDVVEACK 80 (332)
Q Consensus 4 ~~~kI~VtGaaG~IGs~l~~~L~~~~~~~~~~~~~i~l~D~~~~~~~~~~~~~dl~~~~--~-~~~~~v~~~~~~~~a~~ 80 (332)
+.++++||||+|+||++++..|++.+. ++.+.+.+. .+.......++.+.. . ....|+.....+.++++
T Consensus 5 ~~~~~lItG~s~~iG~~la~~l~~~g~-------~v~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~D~~~~~~~~~~~~ 76 (247)
T PRK12935 5 NGKVAIVTGGAKGIGKAITVALAQEGA-------KVVINYNSS-KEAAENLVNELGKEGHDVYAVQADVSKVEDANRLVE 76 (247)
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHcCC-------EEEEEcCCc-HHHHHHHHHHHHhcCCeEEEEECCCCCHHHHHHHHH
Confidence 357899999999999999999998775 666554322 122222222332211 1 11224433333333333
Q ss_pred -------CCcEEEEecCCCCCCC---C---ChhHHHhhhHHHHHHHHHHHHhhc--CCCcEEEEEeCChhhHHHHHHHHC
Q 019990 81 -------DVNIAVMVGGFPRKEG---M---ERKDVMSKNVSIYKAQASALEKHA--APNCKVLVVANPANTNALILKEFA 145 (332)
Q Consensus 81 -------~aDiVi~~ag~~~~~~---~---~~~~~~~~N~~~~~~i~~~i~~~~--~~~~~viv~snp~~~~~~~~~~~~ 145 (332)
..|+|||+||...... . ...+.++.|+.....+.+.+..+. ....+++++|+....
T Consensus 77 ~~~~~~~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~iv~~sS~~~~--------- 147 (247)
T PRK12935 77 EAVNHFGKVDILVNNAGITRDRTFKKLNREDWERVIDVNLSSVFNTTSAVLPYITEAEEGRIISISSIIGQ--------- 147 (247)
T ss_pred HHHHHcCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCcEEEEEcchhhc---------
Confidence 4799999998743211 1 122356778777767666665431 123466666652211
Q ss_pred CCCCCCcEEEeecccHHHHHHHHHHHcCCCCCCeee
Q 019990 146 PSIPAKNITCLTRLDHNRAMGQISERLKVHVSDVKN 181 (332)
Q Consensus 146 ~~~~~~~i~~~t~l~~~r~~~~~a~~~~v~~~~v~~ 181 (332)
.+.++...|+.++.....+...++..+. +..++.
T Consensus 148 ~~~~~~~~Y~~sK~a~~~~~~~l~~~~~--~~~i~v 181 (247)
T PRK12935 148 AGGFGQTNYSAAKAGMLGFTKSLALELA--KTNVTV 181 (247)
T ss_pred CCCCCCcchHHHHHHHHHHHHHHHHHHH--HcCcEE
Confidence 1223334677777766666666666652 334554
|
|
| >PRK07069 short chain dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=98.43 E-value=2.7e-06 Score=75.54 Aligned_cols=156 Identities=19% Similarity=0.178 Sum_probs=90.0
Q ss_pred EEEEEcCCChhHHHHHHHHHhcccCCCCCCeEEEEEecccchhhhhhhHhhhhhhcc-----CCccceEEeCCHHHH---
Q 019990 7 RVLVTGAAGQIGYALVPMIARGIMLGPDQPVILHMLDIEPAAEALNGVKMELIDAAF-----PLLKGVVATTDVVEA--- 78 (332)
Q Consensus 7 kI~VtGaaG~IGs~l~~~L~~~~~~~~~~~~~i~l~D~~~~~~~~~~~~~dl~~~~~-----~~~~~v~~~~~~~~a--- 78 (332)
||+||||+|+||.+++..|++.|. +|++.+++.. +.+.....++..... ....|+....++.++
T Consensus 1 ~ilVtG~~~~iG~~~a~~l~~~G~-------~v~~~~r~~~-~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~ 72 (251)
T PRK07069 1 RAFITGAAGGLGRAIARRMAEQGA-------KVFLTDINDA-AGLDAFAAEINAAHGEGVAFAAVQDVTDEAQWQALLAQ 72 (251)
T ss_pred CEEEECCCChHHHHHHHHHHHCCC-------EEEEEeCCcc-hHHHHHHHHHHhcCCCceEEEEEeecCCHHHHHHHHHH
Confidence 489999999999999999998875 8899987521 223322222221100 011233332222222
Q ss_pred ----hCCCcEEEEecCCCCCC---CCCh---hHHHhhhHH----HHHHHHHHHHhhcCCCcEEEEEeCChhhHHHHHHHH
Q 019990 79 ----CKDVNIAVMVGGFPRKE---GMER---KDVMSKNVS----IYKAQASALEKHAAPNCKVLVVANPANTNALILKEF 144 (332)
Q Consensus 79 ----~~~aDiVi~~ag~~~~~---~~~~---~~~~~~N~~----~~~~i~~~i~~~~~~~~~viv~snp~~~~~~~~~~~ 144 (332)
+...|+|||.||..... ..+. ...+..|+. .++.+++.+++.. ..+++++|+....
T Consensus 73 ~~~~~~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~--~~~ii~~ss~~~~-------- 142 (251)
T PRK07069 73 AADAMGGLSVLVNNAGVGSFGAIEQIELDEWRRVMAINVESIFLGCKHALPYLRASQ--PASIVNISSVAAF-------- 142 (251)
T ss_pred HHHHcCCccEEEECCCcCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHhhcC--CcEEEEecChhhc--------
Confidence 34679999999864321 1122 224556765 6677777777653 3466666653221
Q ss_pred CCCCCCCcEEEeecccHHHHHHHHHHHcCCCCCCeee
Q 019990 145 APSIPAKNITCLTRLDHNRAMGQISERLKVHVSDVKN 181 (332)
Q Consensus 145 ~~~~~~~~i~~~t~l~~~r~~~~~a~~~~v~~~~v~~ 181 (332)
.+.+....|+.++.....+.+.+++.+.-....++.
T Consensus 143 -~~~~~~~~Y~~sK~a~~~~~~~la~e~~~~~~~i~v 178 (251)
T PRK07069 143 -KAEPDYTAYNASKAAVASLTKSIALDCARRGLDVRC 178 (251)
T ss_pred -cCCCCCchhHHHHHHHHHHHHHHHHHhcccCCcEEE
Confidence 112222357778877777777787776544334553
|
|
| >PRK08085 gluconate 5-dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=98.42 E-value=1.7e-06 Score=77.25 Aligned_cols=159 Identities=15% Similarity=0.141 Sum_probs=90.0
Q ss_pred CCCcEEEEEcCCChhHHHHHHHHHhcccCCCCCCeEEEEEecccchhhhhhhHhhhhhhc---cCCccceEEeCCHHHHh
Q 019990 3 KNPLRVLVTGAAGQIGYALVPMIARGIMLGPDQPVILHMLDIEPAAEALNGVKMELIDAA---FPLLKGVVATTDVVEAC 79 (332)
Q Consensus 3 ~~~~kI~VtGaaG~IGs~l~~~L~~~~~~~~~~~~~i~l~D~~~~~~~~~~~~~dl~~~~---~~~~~~v~~~~~~~~a~ 79 (332)
...++++||||+|+||.+++..|++.|. ++++.|++. +.+.....++.+.. .....|+....++.+.+
T Consensus 7 l~~k~~lItGas~giG~~ia~~L~~~G~-------~vvl~~r~~--~~~~~~~~~l~~~~~~~~~~~~Dl~~~~~~~~~~ 77 (254)
T PRK08085 7 LAGKNILITGSAQGIGFLLATGLAEYGA-------EIIINDITA--ERAELAVAKLRQEGIKAHAAPFNVTHKQEVEAAI 77 (254)
T ss_pred CCCCEEEEECCCChHHHHHHHHHHHcCC-------EEEEEcCCH--HHHHHHHHHHHhcCCeEEEEecCCCCHHHHHHHH
Confidence 3567899999999999999999998875 889999753 23333333333211 01123443333333222
Q ss_pred -------CCCcEEEEecCCCCC-C--CCChh---HHHhhhHHHHHHHHHHHHhhc--CCCcEEEEEeCChhhHHHHHHHH
Q 019990 80 -------KDVNIAVMVGGFPRK-E--GMERK---DVMSKNVSIYKAQASALEKHA--APNCKVLVVANPANTNALILKEF 144 (332)
Q Consensus 80 -------~~aDiVi~~ag~~~~-~--~~~~~---~~~~~N~~~~~~i~~~i~~~~--~~~~~viv~snp~~~~~~~~~~~ 144 (332)
...|+|||.+|.... + ..+.. ..++.|......+.+.+..+. ....+++++|+-.. .
T Consensus 78 ~~~~~~~~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~iv~isS~~~-------~- 149 (254)
T PRK08085 78 EHIEKDIGPIDVLINNAGIQRRHPFTEFPEQEWNDVIAVNQTAVFLVSQAVARYMVKRQAGKIINICSMQS-------E- 149 (254)
T ss_pred HHHHHhcCCCCEEEECCCcCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCcEEEEEccchh-------c-
Confidence 357999999986321 1 12222 245667666555555554432 12356676665221 1
Q ss_pred CCCCCCCcEEEeecccHHHHHHHHHHHcCCCCCCeee
Q 019990 145 APSIPAKNITCLTRLDHNRAMGQISERLKVHVSDVKN 181 (332)
Q Consensus 145 ~~~~~~~~i~~~t~l~~~r~~~~~a~~~~v~~~~v~~ 181 (332)
.+.+....|+.++.....+.+.+++.+. +..|+.
T Consensus 150 -~~~~~~~~Y~~sK~a~~~~~~~la~e~~--~~gi~v 183 (254)
T PRK08085 150 -LGRDTITPYAASKGAVKMLTRGMCVELA--RHNIQV 183 (254)
T ss_pred -cCCCCCcchHHHHHHHHHHHHHHHHHHH--hhCeEE
Confidence 1223333567777776777777776653 344553
|
|
| >PRK12745 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=98.42 E-value=1.7e-06 Score=77.13 Aligned_cols=150 Identities=18% Similarity=0.176 Sum_probs=84.7
Q ss_pred cEEEEEcCCChhHHHHHHHHHhcccCCCCCCeEEEEEecccchhhhhhhHhhhhhhc--c-CCccceEEeCCHHHH----
Q 019990 6 LRVLVTGAAGQIGYALVPMIARGIMLGPDQPVILHMLDIEPAAEALNGVKMELIDAA--F-PLLKGVVATTDVVEA---- 78 (332)
Q Consensus 6 ~kI~VtGaaG~IGs~l~~~L~~~~~~~~~~~~~i~l~D~~~~~~~~~~~~~dl~~~~--~-~~~~~v~~~~~~~~a---- 78 (332)
++|+||||+|+||++++..|++.|. +++++|+... +.......++.... . ....|++...++.+.
T Consensus 3 k~vlItG~sg~iG~~la~~L~~~g~-------~vi~~~r~~~-~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~ 74 (256)
T PRK12745 3 PVALVTGGRRGIGLGIARALAAAGF-------DLAINDRPDD-EELAATQQELRALGVEVIFFPADVADLSAHEAMLDAA 74 (256)
T ss_pred cEEEEeCCCchHHHHHHHHHHHCCC-------EEEEEecCch-hHHHHHHHHHHhcCCceEEEEecCCCHHHHHHHHHHH
Confidence 5699999999999999999998875 7888886532 11111112221110 0 112344333332222
Q ss_pred ---hCCCcEEEEecCCCCC---C--CCCh---hHHHhhhHHHHHHHHHHHHhh----cC-C---CcEEEEEeCChhhHHH
Q 019990 79 ---CKDVNIAVMVGGFPRK---E--GMER---KDVMSKNVSIYKAQASALEKH----AA-P---NCKVLVVANPANTNAL 139 (332)
Q Consensus 79 ---~~~aDiVi~~ag~~~~---~--~~~~---~~~~~~N~~~~~~i~~~i~~~----~~-~---~~~viv~snp~~~~~~ 139 (332)
+...|+|||+||.... + ..+. .+.++.|+.....+.+.+.++ .. . ...++++|+....
T Consensus 75 ~~~~~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~~~~~~~iv~~sS~~~~--- 151 (256)
T PRK12745 75 QAAWGRIDCLVNNAGVGVKVRGDLLDLTPESFDRVLAINLRGPFFLTQAVAKRMLAQPEPEELPHRSIVFVSSVNAI--- 151 (256)
T ss_pred HHhcCCCCEEEECCccCCCCCCChhhCCHHHHHHHHHhcchHHHHHHHHHHHHHHhccCcCCCCCcEEEEECChhhc---
Confidence 2468999999987421 1 1122 234667877776666665433 11 0 1245655542211
Q ss_pred HHHHHCCCCCCCcEEEeecccHHHHHHHHHHHc
Q 019990 140 ILKEFAPSIPAKNITCLTRLDHNRAMGQISERL 172 (332)
Q Consensus 140 ~~~~~~~~~~~~~i~~~t~l~~~r~~~~~a~~~ 172 (332)
.+.+....|+.++.....+...+++.+
T Consensus 152 ------~~~~~~~~Y~~sK~a~~~~~~~l~~~~ 178 (256)
T PRK12745 152 ------MVSPNRGEYCISKAGLSMAAQLFAARL 178 (256)
T ss_pred ------cCCCCCcccHHHHHHHHHHHHHHHHHH
Confidence 123334467888888888877777764
|
|
| >PRK07576 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=98.41 E-value=1.4e-06 Score=78.48 Aligned_cols=153 Identities=13% Similarity=0.112 Sum_probs=89.2
Q ss_pred CCCcEEEEEcCCChhHHHHHHHHHhcccCCCCCCeEEEEEecccchhhhhhhHhhhhhhc--c-CCccceEEeCCHHHHh
Q 019990 3 KNPLRVLVTGAAGQIGYALVPMIARGIMLGPDQPVILHMLDIEPAAEALNGVKMELIDAA--F-PLLKGVVATTDVVEAC 79 (332)
Q Consensus 3 ~~~~kI~VtGaaG~IGs~l~~~L~~~~~~~~~~~~~i~l~D~~~~~~~~~~~~~dl~~~~--~-~~~~~v~~~~~~~~a~ 79 (332)
.+.++|+||||+|+||++++..|+..|. +|.++|++.. .+.....++.... . ....|++...++.+++
T Consensus 7 ~~~k~ilItGasggIG~~la~~l~~~G~-------~V~~~~r~~~--~~~~~~~~~~~~~~~~~~~~~Dv~~~~~i~~~~ 77 (264)
T PRK07576 7 FAGKNVVVVGGTSGINLGIAQAFARAGA-------NVAVASRSQE--KVDAAVAQLQQAGPEGLGVSADVRDYAAVEAAF 77 (264)
T ss_pred CCCCEEEEECCCchHHHHHHHHHHHCCC-------EEEEEeCCHH--HHHHHHHHHHHhCCceEEEECCCCCHHHHHHHH
Confidence 3457899999999999999999998875 7999997532 2222222222110 0 0112443333333332
Q ss_pred -------CCCcEEEEecCCCCC---CCCChh---HHHhhhHHHHHHHHHHHHhhc-CCCcEEEEEeCChhhHHHHHHHHC
Q 019990 80 -------KDVNIAVMVGGFPRK---EGMERK---DVMSKNVSIYKAQASALEKHA-APNCKVLVVANPANTNALILKEFA 145 (332)
Q Consensus 80 -------~~aDiVi~~ag~~~~---~~~~~~---~~~~~N~~~~~~i~~~i~~~~-~~~~~viv~snp~~~~~~~~~~~~ 145 (332)
...|+||+.||.... ...+.+ ..+..|......+.+++...- .++.+++++|+....
T Consensus 78 ~~~~~~~~~iD~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~g~~~l~~~~~~~l~~~~g~iv~iss~~~~--------- 148 (264)
T PRK07576 78 AQIADEFGPIDVLVSGAAGNFPAPAAGMSANGFKTVVDIDLLGTFNVLKAAYPLLRRPGASIIQISAPQAF--------- 148 (264)
T ss_pred HHHHHHcCCCCEEEECCCCCCCCccccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhCCCEEEEECChhhc---------
Confidence 357999999875321 112222 245677777767766655431 123566777764221
Q ss_pred CCCCCCcEEEeecccHHHHHHHHHHHcC
Q 019990 146 PSIPAKNITCLTRLDHNRAMGQISERLK 173 (332)
Q Consensus 146 ~~~~~~~i~~~t~l~~~r~~~~~a~~~~ 173 (332)
.+.+....|+.++.....+...++..+.
T Consensus 149 ~~~~~~~~Y~asK~a~~~l~~~la~e~~ 176 (264)
T PRK07576 149 VPMPMQAHVCAAKAGVDMLTRTLALEWG 176 (264)
T ss_pred cCCCCccHHHHHHHHHHHHHHHHHHHhh
Confidence 1223333567778777788777777654
|
|
| >PRK08219 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=98.41 E-value=3.8e-06 Score=73.40 Aligned_cols=146 Identities=17% Similarity=0.180 Sum_probs=81.1
Q ss_pred CcEEEEEcCCChhHHHHHHHHHhcccCCCCCCeEEEEEecccchhhhhhhHhhhhhhccCCccceEEeCCHHHHhC---C
Q 019990 5 PLRVLVTGAAGQIGYALVPMIARGIMLGPDQPVILHMLDIEPAAEALNGVKMELIDAAFPLLKGVVATTDVVEACK---D 81 (332)
Q Consensus 5 ~~kI~VtGaaG~IGs~l~~~L~~~~~~~~~~~~~i~l~D~~~~~~~~~~~~~dl~~~~~~~~~~v~~~~~~~~a~~---~ 81 (332)
+++|+||||+|++|++++..|++. . +|++++++.. .......++... .....|+....++.++++ +
T Consensus 3 ~~~vlVtG~~g~iG~~l~~~l~~~-~-------~V~~~~r~~~--~~~~~~~~~~~~-~~~~~D~~~~~~~~~~~~~~~~ 71 (227)
T PRK08219 3 RPTALITGASRGIGAAIARELAPT-H-------TLLLGGRPAE--RLDELAAELPGA-TPFPVDLTDPEAIAAAVEQLGR 71 (227)
T ss_pred CCEEEEecCCcHHHHHHHHHHHhh-C-------CEEEEeCCHH--HHHHHHHHhccc-eEEecCCCCHHHHHHHHHhcCC
Confidence 568999999999999999999876 4 7889987532 121111111111 112245554445555554 5
Q ss_pred CcEEEEecCCCCCC---CCCh---hHHHhhhHHH----HHHHHHHHHhhcCCCcEEEEEeCChhhHHHHHHHHCCCCCCC
Q 019990 82 VNIAVMVGGFPRKE---GMER---KDVMSKNVSI----YKAQASALEKHAAPNCKVLVVANPANTNALILKEFAPSIPAK 151 (332)
Q Consensus 82 aDiVi~~ag~~~~~---~~~~---~~~~~~N~~~----~~~i~~~i~~~~~~~~~viv~snp~~~~~~~~~~~~~~~~~~ 151 (332)
.|+|||++|..... ..+. ...+..|... .+.+++.+++. ..+++++|+.... .+.++.
T Consensus 72 id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~---~~~~v~~ss~~~~---------~~~~~~ 139 (227)
T PRK08219 72 LDVLVHNAGVADLGPVAESTVDEWRATLEVNVVAPAELTRLLLPALRAA---HGHVVFINSGAGL---------RANPGW 139 (227)
T ss_pred CCEEEECCCcCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhC---CCeEEEEcchHhc---------CcCCCC
Confidence 89999999874321 1111 1235556655 44444444443 2356666643211 112233
Q ss_pred cEEEeecccHHHHHHHHHHHcC
Q 019990 152 NITCLTRLDHNRAMGQISERLK 173 (332)
Q Consensus 152 ~i~~~t~l~~~r~~~~~a~~~~ 173 (332)
..|+.++.....+...+++.+.
T Consensus 140 ~~y~~~K~a~~~~~~~~~~~~~ 161 (227)
T PRK08219 140 GSYAASKFALRALADALREEEP 161 (227)
T ss_pred chHHHHHHHHHHHHHHHHHHhc
Confidence 3566667655666666665544
|
|
| >PRK08226 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=98.39 E-value=1.8e-06 Score=77.47 Aligned_cols=158 Identities=18% Similarity=0.203 Sum_probs=89.0
Q ss_pred CCcEEEEEcCCChhHHHHHHHHHhcccCCCCCCeEEEEEecccchhhhhhhHhhhhhhc--c-CCccceEEeCCHHHHh-
Q 019990 4 NPLRVLVTGAAGQIGYALVPMIARGIMLGPDQPVILHMLDIEPAAEALNGVKMELIDAA--F-PLLKGVVATTDVVEAC- 79 (332)
Q Consensus 4 ~~~kI~VtGaaG~IGs~l~~~L~~~~~~~~~~~~~i~l~D~~~~~~~~~~~~~dl~~~~--~-~~~~~v~~~~~~~~a~- 79 (332)
..++++||||+|+||++++..|++.|. +|++++++.. .......+.... . ....|+....++.+.+
T Consensus 5 ~~~~~lItG~s~giG~~la~~l~~~G~-------~Vv~~~r~~~---~~~~~~~~~~~~~~~~~~~~Dl~~~~~v~~~~~ 74 (263)
T PRK08226 5 TGKTALITGALQGIGEGIARVFARHGA-------NLILLDISPE---IEKLADELCGRGHRCTAVVADVRDPASVAAAIK 74 (263)
T ss_pred CCCEEEEeCCCChHHHHHHHHHHHCCC-------EEEEecCCHH---HHHHHHHHHHhCCceEEEECCCCCHHHHHHHHH
Confidence 457899999999999999999999886 7999987531 111111221110 0 1123443333333332
Q ss_pred ------CCCcEEEEecCCCCCC---CCCh---hHHHhhhHHHHHHHHHHHHhhc--CCCcEEEEEeCChhhHHHHHHHHC
Q 019990 80 ------KDVNIAVMVGGFPRKE---GMER---KDVMSKNVSIYKAQASALEKHA--APNCKVLVVANPANTNALILKEFA 145 (332)
Q Consensus 80 ------~~aDiVi~~ag~~~~~---~~~~---~~~~~~N~~~~~~i~~~i~~~~--~~~~~viv~snp~~~~~~~~~~~~ 145 (332)
...|+|||.||..... ..+. ...+..|+.....+.+.+..+. ....+++++|+.... .
T Consensus 75 ~~~~~~~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~iv~isS~~~~-------~- 146 (263)
T PRK08226 75 RAKEKEGRIDILVNNAGVCRLGSFLDMSDEDRDFHIDINIKGVWNVTKAVLPEMIARKDGRIVMMSSVTGD-------M- 146 (263)
T ss_pred HHHHHcCCCCEEEECCCcCCCCCcccCCHHHHHHHHhhhhHHHHHHHHHHHHHHHhcCCcEEEEECcHHhc-------c-
Confidence 3579999999863211 1122 2246677776666666654431 123466666652110 0
Q ss_pred CCCCCCcEEEeecccHHHHHHHHHHHcCCCCCCeee
Q 019990 146 PSIPAKNITCLTRLDHNRAMGQISERLKVHVSDVKN 181 (332)
Q Consensus 146 ~~~~~~~i~~~t~l~~~r~~~~~a~~~~v~~~~v~~ 181 (332)
...+....|+.++.....+...+++.+. +..++.
T Consensus 147 ~~~~~~~~Y~~sK~a~~~~~~~la~~~~--~~~i~v 180 (263)
T PRK08226 147 VADPGETAYALTKAAIVGLTKSLAVEYA--QSGIRV 180 (263)
T ss_pred cCCCCcchHHHHHHHHHHHHHHHHHHhc--ccCcEE
Confidence 1122233577777777777777877764 334553
|
|
| >PRK06182 short chain dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=98.38 E-value=1.8e-06 Score=78.01 Aligned_cols=151 Identities=13% Similarity=0.120 Sum_probs=85.2
Q ss_pred CCcEEEEEcCCChhHHHHHHHHHhcccCCCCCCeEEEEEecccchhhhhhhHhhhhhhcc-CCccceEEeCCHHHHhC--
Q 019990 4 NPLRVLVTGAAGQIGYALVPMIARGIMLGPDQPVILHMLDIEPAAEALNGVKMELIDAAF-PLLKGVVATTDVVEACK-- 80 (332)
Q Consensus 4 ~~~kI~VtGaaG~IGs~l~~~L~~~~~~~~~~~~~i~l~D~~~~~~~~~~~~~dl~~~~~-~~~~~v~~~~~~~~a~~-- 80 (332)
++++|+||||+|+||++++..|++.|. +|++.+++. +.+.. +..... ....|+....++.+.++
T Consensus 2 ~~k~vlItGasggiG~~la~~l~~~G~-------~V~~~~r~~--~~l~~----~~~~~~~~~~~Dv~~~~~~~~~~~~~ 68 (273)
T PRK06182 2 QKKVALVTGASSGIGKATARRLAAQGY-------TVYGAARRV--DKMED----LASLGVHPLSLDVTDEASIKAAVDTI 68 (273)
T ss_pred CCCEEEEECCCChHHHHHHHHHHHCCC-------EEEEEeCCH--HHHHH----HHhCCCeEEEeeCCCHHHHHHHHHHH
Confidence 356899999999999999999998875 788888753 22221 111111 11234444434434333
Q ss_pred -----CCcEEEEecCCCCCC---CCC---hhHHHhhhHHH----HHHHHHHHHhhcCCCcEEEEEeCChhhHHHHHHHHC
Q 019990 81 -----DVNIAVMVGGFPRKE---GME---RKDVMSKNVSI----YKAQASALEKHAAPNCKVLVVANPANTNALILKEFA 145 (332)
Q Consensus 81 -----~aDiVi~~ag~~~~~---~~~---~~~~~~~N~~~----~~~i~~~i~~~~~~~~~viv~snp~~~~~~~~~~~~ 145 (332)
+.|++|+.||..... ..+ ....++.|... ++.+++.+++.+ ..+++++|+....
T Consensus 69 ~~~~~~id~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~l~~~~~~~--~g~iv~isS~~~~--------- 137 (273)
T PRK06182 69 IAEEGRIDVLVNNAGYGSYGAIEDVPIDEARRQFEVNLFGAARLTQLVLPHMRAQR--SGRIINISSMGGK--------- 137 (273)
T ss_pred HHhcCCCCEEEECCCcCCCCchhhCCHHHHHHHHhHHhHHHHHHHHHHHHHHHhcC--CCEEEEEcchhhc---------
Confidence 689999999874211 112 12345667655 455566666553 3466766652210
Q ss_pred CCCCCCcEEEeecccHHHHHHHHHHHcCCCCCCee
Q 019990 146 PSIPAKNITCLTRLDHNRAMGQISERLKVHVSDVK 180 (332)
Q Consensus 146 ~~~~~~~i~~~t~l~~~r~~~~~a~~~~v~~~~v~ 180 (332)
...+....|+.++.....+...++..+. +..++
T Consensus 138 ~~~~~~~~Y~~sKaa~~~~~~~l~~e~~--~~gi~ 170 (273)
T PRK06182 138 IYTPLGAWYHATKFALEGFSDALRLEVA--PFGID 170 (273)
T ss_pred CCCCCccHhHHHHHHHHHHHHHHHHHhc--ccCCE
Confidence 0112222466677666666666665432 33454
|
|
| >PRK06200 2,3-dihydroxy-2,3-dihydrophenylpropionate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=98.38 E-value=3.1e-06 Score=76.03 Aligned_cols=158 Identities=16% Similarity=0.116 Sum_probs=89.4
Q ss_pred CCCcEEEEEcCCChhHHHHHHHHHhcccCCCCCCeEEEEEecccchhhhhhhHhhhhhhccCCccceEEeCCHHHH----
Q 019990 3 KNPLRVLVTGAAGQIGYALVPMIARGIMLGPDQPVILHMLDIEPAAEALNGVKMELIDAAFPLLKGVVATTDVVEA---- 78 (332)
Q Consensus 3 ~~~~kI~VtGaaG~IGs~l~~~L~~~~~~~~~~~~~i~l~D~~~~~~~~~~~~~dl~~~~~~~~~~v~~~~~~~~a---- 78 (332)
.+.++++||||+|+||++++..|++.|. +|.+++++. +.+.....++.........|+....+..++
T Consensus 4 ~~~k~vlVtGas~gIG~~ia~~l~~~G~-------~V~~~~r~~--~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~ 74 (263)
T PRK06200 4 LHGQVALITGGGSGIGRALVERFLAEGA-------RVAVLERSA--EKLASLRQRFGDHVLVVEGDVTSYADNQRAVDQT 74 (263)
T ss_pred CCCCEEEEeCCCchHHHHHHHHHHHCCC-------EEEEEeCCH--HHHHHHHHHhCCcceEEEccCCCHHHHHHHHHHH
Confidence 3567899999999999999999998885 789998753 223222222211000112233332233222
Q ss_pred ---hCCCcEEEEecCCCCC--C--CCChh-------HHHhhhHHHHHHHHHHHHhhc-CCCcEEEEEeCChhhHHHHHHH
Q 019990 79 ---CKDVNIAVMVGGFPRK--E--GMERK-------DVMSKNVSIYKAQASALEKHA-APNCKVLVVANPANTNALILKE 143 (332)
Q Consensus 79 ---~~~aDiVi~~ag~~~~--~--~~~~~-------~~~~~N~~~~~~i~~~i~~~~-~~~~~viv~snp~~~~~~~~~~ 143 (332)
+...|++|+.||.... + ..+.+ ..+..|+.....+.+.+...- ...+.+|++++-...
T Consensus 75 ~~~~g~id~li~~ag~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~g~iv~~sS~~~~------- 147 (263)
T PRK06200 75 VDAFGKLDCFVGNAGIWDYNTSLVDIPAETLDTAFDEIFNVNVKGYLLGAKAALPALKASGGSMIFTLSNSSF------- 147 (263)
T ss_pred HHhcCCCCEEEECCCCcccCCCcccCChhHHHHHHHHHeeeccHhHHHHHHHHHHHHHhcCCEEEEECChhhc-------
Confidence 2357999999996421 1 12221 234567665555555444321 123456665542110
Q ss_pred HCCCCCCCcEEEeecccHHHHHHHHHHHcCCCCCCeee
Q 019990 144 FAPSIPAKNITCLTRLDHNRAMGQISERLKVHVSDVKN 181 (332)
Q Consensus 144 ~~~~~~~~~i~~~t~l~~~r~~~~~a~~~~v~~~~v~~ 181 (332)
.+.+....|+.+|.....+...+++.++ +. ||.
T Consensus 148 --~~~~~~~~Y~~sK~a~~~~~~~la~el~--~~-Irv 180 (263)
T PRK06200 148 --YPGGGGPLYTASKHAVVGLVRQLAYELA--PK-IRV 180 (263)
T ss_pred --CCCCCCchhHHHHHHHHHHHHHHHHHHh--cC-cEE
Confidence 1122233678888888888888888875 32 664
|
|
| >PRK06701 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=98.36 E-value=3.5e-06 Score=77.05 Aligned_cols=158 Identities=13% Similarity=0.099 Sum_probs=89.7
Q ss_pred CcEEEEEcCCChhHHHHHHHHHhcccCCCCCCeEEEEEecccchhhhhhhHhhhhhhc--c-CCccceEEeCCHHHHh--
Q 019990 5 PLRVLVTGAAGQIGYALVPMIARGIMLGPDQPVILHMLDIEPAAEALNGVKMELIDAA--F-PLLKGVVATTDVVEAC-- 79 (332)
Q Consensus 5 ~~kI~VtGaaG~IGs~l~~~L~~~~~~~~~~~~~i~l~D~~~~~~~~~~~~~dl~~~~--~-~~~~~v~~~~~~~~a~-- 79 (332)
.++|+||||+|+||++++..|++.|. ++++++++... .+......+.... . ....|+....++.+.+
T Consensus 46 ~k~iLItGasggIG~~la~~l~~~G~-------~V~l~~r~~~~-~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~ 117 (290)
T PRK06701 46 GKVALITGGDSGIGRAVAVLFAKEGA-------DIAIVYLDEHE-DANETKQRVEKEGVKCLLIPGDVSDEAFCKDAVEE 117 (290)
T ss_pred CCEEEEeCCCcHHHHHHHHHHHHCCC-------EEEEEeCCcch-HHHHHHHHHHhcCCeEEEEEccCCCHHHHHHHHHH
Confidence 46899999999999999999998875 78888875321 1222222222110 0 1123343333333322
Q ss_pred -----CCCcEEEEecCCCCC--C--CCCh---hHHHhhhHHHHHHHHHHHHhhcCCCcEEEEEeCChhhHHHHHHHHCCC
Q 019990 80 -----KDVNIAVMVGGFPRK--E--GMER---KDVMSKNVSIYKAQASALEKHAAPNCKVLVVANPANTNALILKEFAPS 147 (332)
Q Consensus 80 -----~~aDiVi~~ag~~~~--~--~~~~---~~~~~~N~~~~~~i~~~i~~~~~~~~~viv~snp~~~~~~~~~~~~~~ 147 (332)
...|+|||.||.... + ..+. ...+..|+.....+++++.++-.+...+|++|+-... .+
T Consensus 118 i~~~~~~iD~lI~~Ag~~~~~~~~~~~~~~~~~~~~~~N~~~~~~l~~a~~~~~~~~g~iV~isS~~~~---------~~ 188 (290)
T PRK06701 118 TVRELGRLDILVNNAAFQYPQQSLEDITAEQLDKTFKTNIYSYFHMTKAALPHLKQGSAIINTGSITGY---------EG 188 (290)
T ss_pred HHHHcCCCCEEEECCcccCCCCCcccCCHHHHHHHHhhhhHHHHHHHHHHHHHHhhCCeEEEEeccccc---------CC
Confidence 357999999986321 1 1222 2356788888888888877642233466666653211 11
Q ss_pred CCCCcEEEeecccHHHHHHHHHHHcCCCCCCeee
Q 019990 148 IPAKNITCLTRLDHNRAMGQISERLKVHVSDVKN 181 (332)
Q Consensus 148 ~~~~~i~~~t~l~~~r~~~~~a~~~~v~~~~v~~ 181 (332)
.+....|+.++.....+...+++.+. +..|+.
T Consensus 189 ~~~~~~Y~~sK~a~~~l~~~la~~~~--~~gIrv 220 (290)
T PRK06701 189 NETLIDYSATKGAIHAFTRSLAQSLV--QKGIRV 220 (290)
T ss_pred CCCcchhHHHHHHHHHHHHHHHHHhh--hcCeEE
Confidence 12222456666665666667777654 345654
|
|
| >PRK06914 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=98.36 E-value=1.8e-06 Score=78.26 Aligned_cols=147 Identities=11% Similarity=0.106 Sum_probs=81.6
Q ss_pred CcEEEEEcCCChhHHHHHHHHHhcccCCCCCCeEEEEEecccchhhhhhhHhhhhhhc----c-CCccceEEeCCHHH--
Q 019990 5 PLRVLVTGAAGQIGYALVPMIARGIMLGPDQPVILHMLDIEPAAEALNGVKMELIDAA----F-PLLKGVVATTDVVE-- 77 (332)
Q Consensus 5 ~~kI~VtGaaG~IGs~l~~~L~~~~~~~~~~~~~i~l~D~~~~~~~~~~~~~dl~~~~----~-~~~~~v~~~~~~~~-- 77 (332)
+++++||||+|++|++++..|++.|. +|++++++.. .......++.+.. . ....|+....++.+
T Consensus 3 ~k~~lItGasg~iG~~la~~l~~~G~-------~V~~~~r~~~--~~~~~~~~~~~~~~~~~~~~~~~D~~d~~~~~~~~ 73 (280)
T PRK06914 3 KKIAIVTGASSGFGLLTTLELAKKGY-------LVIATMRNPE--KQENLLSQATQLNLQQNIKVQQLDVTDQNSIHNFQ 73 (280)
T ss_pred CCEEEEECCCchHHHHHHHHHHhCCC-------EEEEEeCCHH--HHHHHHHHHHhcCCCCceeEEecCCCCHHHHHHHH
Confidence 35799999999999999999998875 7888887532 2222211121110 0 11224433332221
Q ss_pred ----HhCCCcEEEEecCCCCCC---CCCh---hHHHhhhHHHHHHHHHHH----HhhcCCCcEEEEEeCChhhHHHHHHH
Q 019990 78 ----ACKDVNIAVMVGGFPRKE---GMER---KDVMSKNVSIYKAQASAL----EKHAAPNCKVLVVANPANTNALILKE 143 (332)
Q Consensus 78 ----a~~~aDiVi~~ag~~~~~---~~~~---~~~~~~N~~~~~~i~~~i----~~~~~~~~~viv~snp~~~~~~~~~~ 143 (332)
.+...|+|||+||..... +.+. .+.+..|......+++.+ ++.. ..+++++|+....
T Consensus 74 ~~~~~~~~id~vv~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~--~~~iv~vsS~~~~------- 144 (280)
T PRK06914 74 LVLKEIGRIDLLVNNAGYANGGFVEEIPVEEYRKQFETNVFGAISVTQAVLPYMRKQK--SGKIINISSISGR------- 144 (280)
T ss_pred HHHHhcCCeeEEEECCcccccCccccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcC--CCEEEEECccccc-------
Confidence 123579999999864321 1121 234567777766665554 4432 2456666542211
Q ss_pred HCCCCCCCcEEEeecccHHHHHHHHHHH
Q 019990 144 FAPSIPAKNITCLTRLDHNRAMGQISER 171 (332)
Q Consensus 144 ~~~~~~~~~i~~~t~l~~~r~~~~~a~~ 171 (332)
.+.++...|+.++.....+...++..
T Consensus 145 --~~~~~~~~Y~~sK~~~~~~~~~l~~~ 170 (280)
T PRK06914 145 --VGFPGLSPYVSSKYALEGFSESLRLE 170 (280)
T ss_pred --CCCCCCchhHHhHHHHHHHHHHHHHH
Confidence 12333445677776666666666543
|
|
| >PRK09134 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=98.36 E-value=2.2e-06 Score=76.75 Aligned_cols=164 Identities=16% Similarity=0.126 Sum_probs=90.6
Q ss_pred CCCcEEEEEcCCChhHHHHHHHHHhcccCCCCCCeEEEEEecccchhhhhhhHhhhhhhc--c-CCccceEEeCCHHHHh
Q 019990 3 KNPLRVLVTGAAGQIGYALVPMIARGIMLGPDQPVILHMLDIEPAAEALNGVKMELIDAA--F-PLLKGVVATTDVVEAC 79 (332)
Q Consensus 3 ~~~~kI~VtGaaG~IGs~l~~~L~~~~~~~~~~~~~i~l~D~~~~~~~~~~~~~dl~~~~--~-~~~~~v~~~~~~~~a~ 79 (332)
.++++++||||+|+||++++..|.+.+. ++++.+.... +.+......+.... . ....|+....++.+++
T Consensus 7 ~~~k~vlItGas~giG~~la~~l~~~g~-------~v~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~ 78 (258)
T PRK09134 7 AAPRAALVTGAARRIGRAIALDLAAHGF-------DVAVHYNRSR-DEAEALAAEIRALGRRAVALQADLADEAEVRALV 78 (258)
T ss_pred CCCCEEEEeCCCcHHHHHHHHHHHHCCC-------EEEEEeCCCH-HHHHHHHHHHHhcCCeEEEEEcCCCCHHHHHHHH
Confidence 4567899999999999999999998775 6777665321 12222222221110 0 1123444333333333
Q ss_pred -------CCCcEEEEecCCCCCC---CCCh---hHHHhhhHHHHHHHHHHHHhhcC--CCcEEEEEeCChhhHHHHHHHH
Q 019990 80 -------KDVNIAVMVGGFPRKE---GMER---KDVMSKNVSIYKAQASALEKHAA--PNCKVLVVANPANTNALILKEF 144 (332)
Q Consensus 80 -------~~aDiVi~~ag~~~~~---~~~~---~~~~~~N~~~~~~i~~~i~~~~~--~~~~viv~snp~~~~~~~~~~~ 144 (332)
...|+|||+||..... ..+. ...++.|+.....+.+++..+.. ....+++++.. .. +
T Consensus 79 ~~~~~~~~~iD~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~iv~~~s~-~~--~----- 150 (258)
T PRK09134 79 ARASAALGPITLLVNNASLFEYDSAASFTRASWDRHMATNLRAPFVLAQAFARALPADARGLVVNMIDQ-RV--W----- 150 (258)
T ss_pred HHHHHHcCCCCEEEECCcCCCCCccccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCceEEEECch-hh--c-----
Confidence 2479999999864221 1121 33567788777777776665431 12344444321 10 0
Q ss_pred CCCCCCCcEEEeecccHHHHHHHHHHHcCCCCCCeeeeEEEec
Q 019990 145 APSIPAKNITCLTRLDHNRAMGQISERLKVHVSDVKNVIIWGN 187 (332)
Q Consensus 145 ~~~~~~~~i~~~t~l~~~r~~~~~a~~~~v~~~~v~~~~V~G~ 187 (332)
...|....|+.+|...+.+.+.+++.++- . ++. +++.+
T Consensus 151 -~~~p~~~~Y~~sK~a~~~~~~~la~~~~~--~-i~v-~~i~P 188 (258)
T PRK09134 151 -NLNPDFLSYTLSKAALWTATRTLAQALAP--R-IRV-NAIGP 188 (258)
T ss_pred -CCCCCchHHHHHHHHHHHHHHHHHHHhcC--C-cEE-EEeec
Confidence 11122235677887777777778877652 2 653 34454
|
|
| >PRK09072 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=98.35 E-value=2.4e-06 Score=76.69 Aligned_cols=161 Identities=18% Similarity=0.214 Sum_probs=88.9
Q ss_pred CCCCCcEEEEEcCCChhHHHHHHHHHhcccCCCCCCeEEEEEecccchhhhhhhHhhhhhh-cc-CCccceEEeCCHHHH
Q 019990 1 MAKNPLRVLVTGAAGQIGYALVPMIARGIMLGPDQPVILHMLDIEPAAEALNGVKMELIDA-AF-PLLKGVVATTDVVEA 78 (332)
Q Consensus 1 m~~~~~kI~VtGaaG~IGs~l~~~L~~~~~~~~~~~~~i~l~D~~~~~~~~~~~~~dl~~~-~~-~~~~~v~~~~~~~~a 78 (332)
|+.+.++|+||||+|+||.+++..|++.|. +|.+++++. +.+.....++... .. ....|+....++.+.
T Consensus 1 m~~~~~~vlItG~s~~iG~~ia~~l~~~G~-------~V~~~~r~~--~~~~~~~~~~~~~~~~~~~~~D~~d~~~~~~~ 71 (263)
T PRK09072 1 MDLKDKRVLLTGASGGIGQALAEALAAAGA-------RLLLVGRNA--EKLEALAARLPYPGRHRWVVADLTSEAGREAV 71 (263)
T ss_pred CCCCCCEEEEECCCchHHHHHHHHHHHCCC-------EEEEEECCH--HHHHHHHHHHhcCCceEEEEccCCCHHHHHHH
Confidence 777778999999999999999999998885 899999753 2232222222110 00 011233322222221
Q ss_pred ------hCCCcEEEEecCCCCCC---CCCh---hHHHhhhHHHHHHHHHHHHhhc--CCCcEEEEEeCChhhHHHHHHHH
Q 019990 79 ------CKDVNIAVMVGGFPRKE---GMER---KDVMSKNVSIYKAQASALEKHA--APNCKVLVVANPANTNALILKEF 144 (332)
Q Consensus 79 ------~~~aDiVi~~ag~~~~~---~~~~---~~~~~~N~~~~~~i~~~i~~~~--~~~~~viv~snp~~~~~~~~~~~ 144 (332)
+...|+|||+||..... ..+. ...++.|+.....+.+.+..+- .+...++++++....
T Consensus 72 ~~~~~~~~~id~lv~~ag~~~~~~~~~~~~~~~~~~~~~n~~g~~~l~~~~~~~~~~~~~~~iv~isS~~~~-------- 143 (263)
T PRK09072 72 LARAREMGGINVLINNAGVNHFALLEDQDPEAIERLLALNLTAPMQLTRALLPLLRAQPSAMVVNVGSTFGS-------- 143 (263)
T ss_pred HHHHHhcCCCCEEEECCCCCCccccccCCHHHHHHHHhhhhHHHHHHHHHHHHHHHhcCCCEEEEecChhhC--------
Confidence 24679999999874321 1121 2345678777766666665431 122455666653211
Q ss_pred CCCCCCCcEEEeecccHHHHHHHHHHHcCCCCCCeee
Q 019990 145 APSIPAKNITCLTRLDHNRAMGQISERLKVHVSDVKN 181 (332)
Q Consensus 145 ~~~~~~~~i~~~t~l~~~r~~~~~a~~~~v~~~~v~~ 181 (332)
.+.+....|+.++.....+...++..+. +..++.
T Consensus 144 -~~~~~~~~Y~~sK~a~~~~~~~l~~~~~--~~~i~v 177 (263)
T PRK09072 144 -IGYPGYASYCASKFALRGFSEALRRELA--DTGVRV 177 (263)
T ss_pred -cCCCCccHHHHHHHHHHHHHHHHHHHhc--ccCcEE
Confidence 1222222456666655555666665543 334543
|
|
| >PRK07775 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=98.35 E-value=3.6e-06 Score=76.21 Aligned_cols=150 Identities=13% Similarity=0.062 Sum_probs=85.1
Q ss_pred CcEEEEEcCCChhHHHHHHHHHhcccCCCCCCeEEEEEecccchhhhhhhHhhhhhh--cc-CCccceEEeCCHHHHh--
Q 019990 5 PLRVLVTGAAGQIGYALVPMIARGIMLGPDQPVILHMLDIEPAAEALNGVKMELIDA--AF-PLLKGVVATTDVVEAC-- 79 (332)
Q Consensus 5 ~~kI~VtGaaG~IGs~l~~~L~~~~~~~~~~~~~i~l~D~~~~~~~~~~~~~dl~~~--~~-~~~~~v~~~~~~~~a~-- 79 (332)
++.++||||+|+||++++..|++.|. +|.+.+++. +.+.....++... .. ....|++...++.+++
T Consensus 10 ~~~vlVtGa~g~iG~~la~~L~~~G~-------~V~~~~r~~--~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~ 80 (274)
T PRK07775 10 RRPALVAGASSGIGAATAIELAAAGF-------PVALGARRV--EKCEELVDKIRADGGEAVAFPLDVTDPDSVKSFVAQ 80 (274)
T ss_pred CCEEEEECCCchHHHHHHHHHHHCCC-------EEEEEeCCH--HHHHHHHHHHHhcCCeEEEEECCCCCHHHHHHHHHH
Confidence 45799999999999999999998885 788887643 2222221122111 00 0112444333333333
Q ss_pred -----CCCcEEEEecCCCCCC---CCCh---hHHHhhhHHHHHHHHHHHHhhc--CCCcEEEEEeCChhhHHHHHHHHCC
Q 019990 80 -----KDVNIAVMVGGFPRKE---GMER---KDVMSKNVSIYKAQASALEKHA--APNCKVLVVANPANTNALILKEFAP 146 (332)
Q Consensus 80 -----~~aDiVi~~ag~~~~~---~~~~---~~~~~~N~~~~~~i~~~i~~~~--~~~~~viv~snp~~~~~~~~~~~~~ 146 (332)
...|+|||.||..... ..+. ...+..|......+.+.+.... ....+++++|+... + .
T Consensus 81 ~~~~~~~id~vi~~Ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~l~~~~~~~~g~iv~isS~~~---~------~ 151 (274)
T PRK07775 81 AEEALGEIEVLVSGAGDTYFGKLHEISTEQFESQVQIHLVGANRLATAVLPGMIERRRGDLIFVGSDVA---L------R 151 (274)
T ss_pred HHHhcCCCCEEEECCCcCCCcccccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCceEEEECChHh---c------C
Confidence 3679999999864311 1122 2335677776666666653221 11245666665211 0 1
Q ss_pred CCCCCcEEEeecccHHHHHHHHHHHc
Q 019990 147 SIPAKNITCLTRLDHNRAMGQISERL 172 (332)
Q Consensus 147 ~~~~~~i~~~t~l~~~r~~~~~a~~~ 172 (332)
+.+....|+.++.....+...+++.+
T Consensus 152 ~~~~~~~Y~~sK~a~~~l~~~~~~~~ 177 (274)
T PRK07775 152 QRPHMGAYGAAKAGLEAMVTNLQMEL 177 (274)
T ss_pred CCCCcchHHHHHHHHHHHHHHHHHHh
Confidence 22333357778888888887777765
|
|
| >PRK07454 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=98.35 E-value=2.3e-06 Score=75.74 Aligned_cols=152 Identities=17% Similarity=0.162 Sum_probs=83.2
Q ss_pred CCC-CCcEEEEEcCCChhHHHHHHHHHhcccCCCCCCeEEEEEecccchhhhhhhHhhhhhh--cc-CCccceEEeCCHH
Q 019990 1 MAK-NPLRVLVTGAAGQIGYALVPMIARGIMLGPDQPVILHMLDIEPAAEALNGVKMELIDA--AF-PLLKGVVATTDVV 76 (332)
Q Consensus 1 m~~-~~~kI~VtGaaG~IGs~l~~~L~~~~~~~~~~~~~i~l~D~~~~~~~~~~~~~dl~~~--~~-~~~~~v~~~~~~~ 76 (332)
|+. .+++++||||+|++|+.++..|++.|. +|++++++.. .......++... .. ....|++...++.
T Consensus 1 ~~~~~~k~vlItG~sg~iG~~la~~l~~~G~-------~V~~~~r~~~--~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~ 71 (241)
T PRK07454 1 MSLNSMPRALITGASSGIGKATALAFAKAGW-------DLALVARSQD--ALEALAAELRSTGVKAAAYSIDLSNPEAIA 71 (241)
T ss_pred CCCCCCCEEEEeCCCchHHHHHHHHHHHCCC-------EEEEEeCCHH--HHHHHHHHHHhCCCcEEEEEccCCCHHHHH
Confidence 664 456799999999999999999999885 7999997542 222222222211 00 1123443333333
Q ss_pred HHh-------CCCcEEEEecCCCCCC---CCCh---hHHHhhhHHHHHHHHHHH----HhhcCCCcEEEEEeCChhhHHH
Q 019990 77 EAC-------KDVNIAVMVGGFPRKE---GMER---KDVMSKNVSIYKAQASAL----EKHAAPNCKVLVVANPANTNAL 139 (332)
Q Consensus 77 ~a~-------~~aDiVi~~ag~~~~~---~~~~---~~~~~~N~~~~~~i~~~i----~~~~~~~~~viv~snp~~~~~~ 139 (332)
.++ ...|+||+.+|..... ..+. ...+..|+.....+.+.+ .+.. ..+++++|+....
T Consensus 72 ~~~~~~~~~~~~id~lv~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~--~~~iv~isS~~~~--- 146 (241)
T PRK07454 72 PGIAELLEQFGCPDVLINNAGMAYTGPLLEMPLSDWQWVIQLNLTSVFQCCSAVLPGMRARG--GGLIINVSSIAAR--- 146 (241)
T ss_pred HHHHHHHHHcCCCCEEEECCCccCCCchhhCCHHHHHHHHHhccHHHHHHHHHHHHHHHhcC--CcEEEEEccHHhC---
Confidence 333 3589999999864321 1121 234566776555544444 3332 3466666653211
Q ss_pred HHHHHCCCCCCCcEEEeecccHHHHHHHHHHHc
Q 019990 140 ILKEFAPSIPAKNITCLTRLDHNRAMGQISERL 172 (332)
Q Consensus 140 ~~~~~~~~~~~~~i~~~t~l~~~r~~~~~a~~~ 172 (332)
.+.+....|+.++.....+...+++.+
T Consensus 147 ------~~~~~~~~Y~~sK~~~~~~~~~~a~e~ 173 (241)
T PRK07454 147 ------NAFPQWGAYCVSKAALAAFTKCLAEEE 173 (241)
T ss_pred ------cCCCCccHHHHHHHHHHHHHHHHHHHh
Confidence 112222345666665555555555544
|
|
| >PRK06113 7-alpha-hydroxysteroid dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=98.35 E-value=8.1e-06 Score=72.93 Aligned_cols=163 Identities=14% Similarity=0.072 Sum_probs=94.1
Q ss_pred CCcEEEEEcCCChhHHHHHHHHHhcccCCCCCCeEEEEEecccchhhhhhhHhhhhhhcc---CCccceEEeCCHHHH--
Q 019990 4 NPLRVLVTGAAGQIGYALVPMIARGIMLGPDQPVILHMLDIEPAAEALNGVKMELIDAAF---PLLKGVVATTDVVEA-- 78 (332)
Q Consensus 4 ~~~kI~VtGaaG~IGs~l~~~L~~~~~~~~~~~~~i~l~D~~~~~~~~~~~~~dl~~~~~---~~~~~v~~~~~~~~a-- 78 (332)
+.++|+||||+|+||++++..|.+.|. ++++++++. +.+.....++.+... ....|++...++.++
T Consensus 10 ~~k~vlVtG~s~gIG~~la~~l~~~G~-------~vv~~~r~~--~~~~~~~~~l~~~~~~~~~~~~D~~~~~~i~~~~~ 80 (255)
T PRK06113 10 DGKCAIITGAGAGIGKEIAITFATAGA-------SVVVSDINA--DAANHVVDEIQQLGGQAFACRCDITSEQELSALAD 80 (255)
T ss_pred CCCEEEEECCCchHHHHHHHHHHHCCC-------eEEEEeCCH--HHHHHHHHHHHhcCCcEEEEEccCCCHHHHHHHHH
Confidence 467999999999999999999998875 788888753 223222223322110 011344333333332
Q ss_pred -----hCCCcEEEEecCCCCC--CCCChhH---HHhhhHHHHHHHHHHHHhhc--CCCcEEEEEeCChhhHHHHHHHHCC
Q 019990 79 -----CKDVNIAVMVGGFPRK--EGMERKD---VMSKNVSIYKAQASALEKHA--APNCKVLVVANPANTNALILKEFAP 146 (332)
Q Consensus 79 -----~~~aDiVi~~ag~~~~--~~~~~~~---~~~~N~~~~~~i~~~i~~~~--~~~~~viv~snp~~~~~~~~~~~~~ 146 (332)
+...|++||+||.... ...+..+ .+..|+.....+++.+..+- .....++++|+.... .
T Consensus 81 ~~~~~~~~~d~li~~ag~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~iv~isS~~~~---------~ 151 (255)
T PRK06113 81 FALSKLGKVDILVNNAGGGGPKPFDMPMADFRRAYELNVFSFFHLSQLVAPEMEKNGGGVILTITSMAAE---------N 151 (255)
T ss_pred HHHHHcCCCCEEEECCCCCCCCCCCCCHHHHHHHHHHhhhhHHHHHHHHHHHHHhcCCcEEEEEeccccc---------C
Confidence 2357999999986321 1222222 35678777766666665321 122466666653211 1
Q ss_pred CCCCCcEEEeecccHHHHHHHHHHHcCCCCCCeeeeEEEec
Q 019990 147 SIPAKNITCLTRLDHNRAMGQISERLKVHVSDVKNVIIWGN 187 (332)
Q Consensus 147 ~~~~~~i~~~t~l~~~r~~~~~a~~~~v~~~~v~~~~V~G~ 187 (332)
+.+....|+.++.....+.+.+++.+. +..|+. +++.+
T Consensus 152 ~~~~~~~Y~~sK~a~~~~~~~la~~~~--~~~i~v-~~v~p 189 (255)
T PRK06113 152 KNINMTSYASSKAAASHLVRNMAFDLG--EKNIRV-NGIAP 189 (255)
T ss_pred CCCCcchhHHHHHHHHHHHHHHHHHhh--hhCeEE-EEEec
Confidence 223333577778777777777776653 556774 44554
|
|
| >PRK08220 2,3-dihydroxybenzoate-2,3-dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=98.35 E-value=2e-06 Score=76.51 Aligned_cols=152 Identities=16% Similarity=0.103 Sum_probs=85.7
Q ss_pred CCcEEEEEcCCChhHHHHHHHHHhcccCCCCCCeEEEEEecccchhhhhhhHhhhhhhccCCccceEEeCCHHHHh----
Q 019990 4 NPLRVLVTGAAGQIGYALVPMIARGIMLGPDQPVILHMLDIEPAAEALNGVKMELIDAAFPLLKGVVATTDVVEAC---- 79 (332)
Q Consensus 4 ~~~kI~VtGaaG~IGs~l~~~L~~~~~~~~~~~~~i~l~D~~~~~~~~~~~~~dl~~~~~~~~~~v~~~~~~~~a~---- 79 (332)
+.++++||||+|+||++++..|++.|. ++++++++. .... ......+..|+....++.+.+
T Consensus 7 ~~k~vlItGas~~iG~~la~~l~~~G~-------~v~~~~~~~----~~~~----~~~~~~~~~D~~~~~~~~~~~~~~~ 71 (252)
T PRK08220 7 SGKTVWVTGAAQGIGYAVALAFVEAGA-------KVIGFDQAF----LTQE----DYPFATFVLDVSDAAAVAQVCQRLL 71 (252)
T ss_pred CCCEEEEeCCCchHHHHHHHHHHHCCC-------EEEEEecch----hhhc----CCceEEEEecCCCHHHHHHHHHHHH
Confidence 457899999999999999999998875 788888742 1000 000000112333222333322
Q ss_pred ---CCCcEEEEecCCCCCC---CCCh---hHHHhhhHHHHHHHHHHHHhhc--CCCcEEEEEeCChhhHHHHHHHHCCCC
Q 019990 80 ---KDVNIAVMVGGFPRKE---GMER---KDVMSKNVSIYKAQASALEKHA--APNCKVLVVANPANTNALILKEFAPSI 148 (332)
Q Consensus 80 ---~~aDiVi~~ag~~~~~---~~~~---~~~~~~N~~~~~~i~~~i~~~~--~~~~~viv~snp~~~~~~~~~~~~~~~ 148 (332)
...|+||+.+|..... ..+. ...+..|......+++++..+- ....+++++|+... . .+.
T Consensus 72 ~~~~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~g~iv~~ss~~~-------~--~~~ 142 (252)
T PRK08220 72 AETGPLDVLVNAAGILRMGATDSLSDEDWQQTFAVNAGGAFNLFRAVMPQFRRQRSGAIVTVGSNAA-------H--VPR 142 (252)
T ss_pred HHcCCCCEEEECCCcCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhCCCCEEEEECCchh-------c--cCC
Confidence 3479999999874321 1122 2345677776666666654321 12346666665221 0 112
Q ss_pred CCCcEEEeecccHHHHHHHHHHHcCCCCCCeee
Q 019990 149 PAKNITCLTRLDHNRAMGQISERLKVHVSDVKN 181 (332)
Q Consensus 149 ~~~~i~~~t~l~~~r~~~~~a~~~~v~~~~v~~ 181 (332)
+....|+.++.....+...+++.+. +..++.
T Consensus 143 ~~~~~Y~~sK~a~~~~~~~la~e~~--~~~i~v 173 (252)
T PRK08220 143 IGMAAYGASKAALTSLAKCVGLELA--PYGVRC 173 (252)
T ss_pred CCCchhHHHHHHHHHHHHHHHHHhh--HhCeEE
Confidence 2223567777777777777777743 334553
|
|
| >PRK06123 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=98.35 E-value=3.6e-06 Score=74.71 Aligned_cols=150 Identities=15% Similarity=0.118 Sum_probs=84.3
Q ss_pred cEEEEEcCCChhHHHHHHHHHhcccCCCCCCeEEEEEecccchhhhhhhHhhhhhhc--c-CCccceEEeCCHHHHhC--
Q 019990 6 LRVLVTGAAGQIGYALVPMIARGIMLGPDQPVILHMLDIEPAAEALNGVKMELIDAA--F-PLLKGVVATTDVVEACK-- 80 (332)
Q Consensus 6 ~kI~VtGaaG~IGs~l~~~L~~~~~~~~~~~~~i~l~D~~~~~~~~~~~~~dl~~~~--~-~~~~~v~~~~~~~~a~~-- 80 (332)
+.++||||+|+||++++..|++.|. .+++.+.+. .+.......++.... . ....|++...++.++++
T Consensus 3 ~~~lVtG~~~~iG~~~a~~l~~~G~-------~vv~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~Dl~~~~~~~~~~~~~ 74 (248)
T PRK06123 3 KVMIITGASRGIGAATALLAAERGY-------AVCLNYLRN-RDAAEAVVQAIRRQGGEALAVAADVADEADVLRLFEAV 74 (248)
T ss_pred CEEEEECCCchHHHHHHHHHHHCCC-------eEEEecCCC-HHHHHHHHHHHHhCCCcEEEEEeccCCHHHHHHHHHHH
Confidence 4699999999999999999998775 666766432 122222222222110 0 11234443333333333
Q ss_pred -----CCcEEEEecCCCCCC----CCChh---HHHhhhHHHHHHHHHHHHhhc-----CCCcEEEEEeCChhhHHHHHHH
Q 019990 81 -----DVNIAVMVGGFPRKE----GMERK---DVMSKNVSIYKAQASALEKHA-----APNCKVLVVANPANTNALILKE 143 (332)
Q Consensus 81 -----~aDiVi~~ag~~~~~----~~~~~---~~~~~N~~~~~~i~~~i~~~~-----~~~~~viv~snp~~~~~~~~~~ 143 (332)
..|+|||+||..... ..+.+ ..+..|+.....+.+.+.++- ...+.++++|+....
T Consensus 75 ~~~~~~id~li~~ag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~~g~iv~~sS~~~~------- 147 (248)
T PRK06123 75 DRELGRLDALVNNAGILEAQMRLEQMDAARLTRIFATNVVGSFLCAREAVKRMSTRHGGRGGAIVNVSSMAAR------- 147 (248)
T ss_pred HHHhCCCCEEEECCCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCCCeEEEEECchhhc-------
Confidence 579999999874321 11211 346777777666555554431 012456766753221
Q ss_pred HCCCCCCC-cEEEeecccHHHHHHHHHHHc
Q 019990 144 FAPSIPAK-NITCLTRLDHNRAMGQISERL 172 (332)
Q Consensus 144 ~~~~~~~~-~i~~~t~l~~~r~~~~~a~~~ 172 (332)
.+.+.. ..|+.++.....+...+++.+
T Consensus 148 --~~~~~~~~~Y~~sKaa~~~~~~~la~~~ 175 (248)
T PRK06123 148 --LGSPGEYIDYAASKGAIDTMTIGLAKEV 175 (248)
T ss_pred --CCCCCCccchHHHHHHHHHHHHHHHHHh
Confidence 112221 247888888888888888876
|
|
| >PRK06924 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=98.35 E-value=1.7e-06 Score=77.07 Aligned_cols=160 Identities=9% Similarity=0.047 Sum_probs=87.6
Q ss_pred CcEEEEEcCCChhHHHHHHHHHhcccCCCCCCeEEEEEecccchhhhhhhHhhhhhhcc-CCccceEEeCCHHHHhCC--
Q 019990 5 PLRVLVTGAAGQIGYALVPMIARGIMLGPDQPVILHMLDIEPAAEALNGVKMELIDAAF-PLLKGVVATTDVVEACKD-- 81 (332)
Q Consensus 5 ~~kI~VtGaaG~IGs~l~~~L~~~~~~~~~~~~~i~l~D~~~~~~~~~~~~~dl~~~~~-~~~~~v~~~~~~~~a~~~-- 81 (332)
|++|+||||+|+||++++..|++.+. +|.++++... +.+....... .... ....|+....++.+.++.
T Consensus 1 ~k~vlItGasggiG~~ia~~l~~~g~-------~V~~~~r~~~-~~~~~~~~~~-~~~~~~~~~D~~~~~~~~~~~~~~~ 71 (251)
T PRK06924 1 MRYVIITGTSQGLGEAIANQLLEKGT-------HVISISRTEN-KELTKLAEQY-NSNLTFHSLDLQDVHELETNFNEIL 71 (251)
T ss_pred CcEEEEecCCchHHHHHHHHHHhcCC-------EEEEEeCCch-HHHHHHHhcc-CCceEEEEecCCCHHHHHHHHHHHH
Confidence 35799999999999999999998875 7888887542 1221111100 0011 112344433333333321
Q ss_pred ---------CcEEEEecCCCCC---C-CCChhH---HHhhhHHH----HHHHHHHHHhhcCCCcEEEEEeCChhhHHHHH
Q 019990 82 ---------VNIAVMVGGFPRK---E-GMERKD---VMSKNVSI----YKAQASALEKHAAPNCKVLVVANPANTNALIL 141 (332)
Q Consensus 82 ---------aDiVi~~ag~~~~---~-~~~~~~---~~~~N~~~----~~~i~~~i~~~~~~~~~viv~snp~~~~~~~~ 141 (332)
.+++|+.+|.... . ..+..+ .++.|... .+.+++.+++.. ...+++++|+...
T Consensus 72 ~~~~~~~~~~~~~v~~ag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~-~~~~iv~~sS~~~------ 144 (251)
T PRK06924 72 SSIQEDNVSSIHLINNAGMVAPIKPIEKAESEELITNVHLNLLAPMILTSTFMKHTKDWK-VDKRVINISSGAA------ 144 (251)
T ss_pred HhcCcccCCceEEEEcceecccCcccccCCHHHHHHHhccceehHHHHHHHHHHHHhccC-CCceEEEecchhh------
Confidence 1267888876321 1 122222 23445543 344445444432 2346666665211
Q ss_pred HHHCCCCCCCcEEEeecccHHHHHHHHHHHcCCCCCCeeeeE
Q 019990 142 KEFAPSIPAKNITCLTRLDHNRAMGQISERLKVHVSDVKNVI 183 (332)
Q Consensus 142 ~~~~~~~~~~~i~~~t~l~~~r~~~~~a~~~~v~~~~v~~~~ 183 (332)
. ..+++...|+.++.....+.+.++..++..+..++...
T Consensus 145 --~-~~~~~~~~Y~~sKaa~~~~~~~la~e~~~~~~~i~v~~ 183 (251)
T PRK06924 145 --K-NPYFGWSAYCSSKAGLDMFTQTVATEQEEEEYPVKIVA 183 (251)
T ss_pred --c-CCCCCcHHHhHHHHHHHHHHHHHHHHhhhcCCCeEEEE
Confidence 0 23444446788888888888888887765556676543
|
|
| >PRK06124 gluconate 5-dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=98.34 E-value=2.5e-06 Score=76.15 Aligned_cols=152 Identities=12% Similarity=0.124 Sum_probs=84.9
Q ss_pred CCcEEEEEcCCChhHHHHHHHHHhcccCCCCCCeEEEEEecccchhhhhhhHhhhhhhc--c-CCccceEEeCCHHHHh-
Q 019990 4 NPLRVLVTGAAGQIGYALVPMIARGIMLGPDQPVILHMLDIEPAAEALNGVKMELIDAA--F-PLLKGVVATTDVVEAC- 79 (332)
Q Consensus 4 ~~~kI~VtGaaG~IGs~l~~~L~~~~~~~~~~~~~i~l~D~~~~~~~~~~~~~dl~~~~--~-~~~~~v~~~~~~~~a~- 79 (332)
++++|+||||+|+||++++..|++.|. +|.+++++. +.+.....++.... . ....|+....++.+++
T Consensus 10 ~~k~ilItGas~~IG~~la~~l~~~G~-------~v~~~~r~~--~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~ 80 (256)
T PRK06124 10 AGQVALVTGSARGLGFEIARALAGAGA-------HVLVNGRNA--ATLEAAVAALRAAGGAAEALAFDIADEEAVAAAFA 80 (256)
T ss_pred CCCEEEEECCCchHHHHHHHHHHHcCC-------eEEEEeCCH--HHHHHHHHHHHhcCCceEEEEccCCCHHHHHHHHH
Confidence 468899999999999999999998875 899999864 23333233332111 1 1123444333333333
Q ss_pred ------CCCcEEEEecCCCCCC---CCChh---HHHhhhHHHHHHHHHHHHhhc--CCCcEEEEEeCChhhHHHHHHHHC
Q 019990 80 ------KDVNIAVMVGGFPRKE---GMERK---DVMSKNVSIYKAQASALEKHA--APNCKVLVVANPANTNALILKEFA 145 (332)
Q Consensus 80 ------~~aDiVi~~ag~~~~~---~~~~~---~~~~~N~~~~~~i~~~i~~~~--~~~~~viv~snp~~~~~~~~~~~~ 145 (332)
...|+||+.+|..... ..+.. ..+..|......+.+.+.+.- .....++++|+....
T Consensus 81 ~~~~~~~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~iv~~ss~~~~--------- 151 (256)
T PRK06124 81 RIDAEHGRLDILVNNVGARDRRPLAELDDAAIRALLETDLVAPILLSRLAAQRMKRQGYGRIIAITSIAGQ--------- 151 (256)
T ss_pred HHHHhcCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCcEEEEEeechhc---------
Confidence 2469999999864211 11222 245667766656654443321 123466776754221
Q ss_pred CCCCCCcEEEeecccHHHHHHHHHHHcC
Q 019990 146 PSIPAKNITCLTRLDHNRAMGQISERLK 173 (332)
Q Consensus 146 ~~~~~~~i~~~t~l~~~r~~~~~a~~~~ 173 (332)
.+.+....|+.++.....+...+++.++
T Consensus 152 ~~~~~~~~Y~~sK~a~~~~~~~la~e~~ 179 (256)
T PRK06124 152 VARAGDAVYPAAKQGLTGLMRALAAEFG 179 (256)
T ss_pred cCCCCccHhHHHHHHHHHHHHHHHHHHH
Confidence 1122223456666666666666666654
|
|
| >PRK12742 oxidoreductase; Provisional | Back alignment and domain information |
|---|
Probab=98.34 E-value=7.5e-06 Score=72.11 Aligned_cols=161 Identities=11% Similarity=0.133 Sum_probs=90.0
Q ss_pred CC-CCCcEEEEEcCCChhHHHHHHHHHhcccCCCCCCeEEEEEecccchhhhhhhHhhhhhhccCCccceEEeCCHHHHh
Q 019990 1 MA-KNPLRVLVTGAAGQIGYALVPMIARGIMLGPDQPVILHMLDIEPAAEALNGVKMELIDAAFPLLKGVVATTDVVEAC 79 (332)
Q Consensus 1 m~-~~~~kI~VtGaaG~IGs~l~~~L~~~~~~~~~~~~~i~l~D~~~~~~~~~~~~~dl~~~~~~~~~~v~~~~~~~~a~ 79 (332)
|+ .+.++|+||||+|.||++++..|++.|. ++++.+.+.. +..+....++. .. ....|+.....+.+.+
T Consensus 1 m~~~~~k~vlItGasggIG~~~a~~l~~~G~-------~v~~~~~~~~-~~~~~l~~~~~-~~-~~~~D~~~~~~~~~~~ 70 (237)
T PRK12742 1 MGAFTGKKVLVLGGSRGIGAAIVRRFVTDGA-------NVRFTYAGSK-DAAERLAQETG-AT-AVQTDSADRDAVIDVV 70 (237)
T ss_pred CCCCCCCEEEEECCCChHHHHHHHHHHHCCC-------EEEEecCCCH-HHHHHHHHHhC-Ce-EEecCCCCHHHHHHHH
Confidence 54 2457899999999999999999998875 6777654321 12221111111 00 0112332222233333
Q ss_pred ---CCCcEEEEecCCCCCC---CCCh---hHHHhhhHHHHHHHHHHHHhhcCCCcEEEEEeCChhhHHHHHHHHCCCCCC
Q 019990 80 ---KDVNIAVMVGGFPRKE---GMER---KDVMSKNVSIYKAQASALEKHAAPNCKVLVVANPANTNALILKEFAPSIPA 150 (332)
Q Consensus 80 ---~~aDiVi~~ag~~~~~---~~~~---~~~~~~N~~~~~~i~~~i~~~~~~~~~viv~snp~~~~~~~~~~~~~~~~~ 150 (332)
...|++||.||..... ..+. ...+..|+.....+...+.+...+..+++++++.... . ...+.
T Consensus 71 ~~~~~id~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~g~iv~isS~~~~------~--~~~~~ 142 (237)
T PRK12742 71 RKSGALDILVVNAGIAVFGDALELDADDIDRLFKINIHAPYHASVEAARQMPEGGRIIIIGSVNGD------R--MPVAG 142 (237)
T ss_pred HHhCCCcEEEECCCCCCCCCcccCCHHHHHHHHhHHHHHHHHHHHHHHHHHhcCCeEEEEeccccc------c--CCCCC
Confidence 3479999999874211 1121 2345667766655555444432234566666653210 0 12334
Q ss_pred CcEEEeecccHHHHHHHHHHHcCCCCCCeee
Q 019990 151 KNITCLTRLDHNRAMGQISERLKVHVSDVKN 181 (332)
Q Consensus 151 ~~i~~~t~l~~~r~~~~~a~~~~v~~~~v~~ 181 (332)
...|+.++.....+...+++.++ +..++.
T Consensus 143 ~~~Y~~sKaa~~~~~~~la~~~~--~~gi~v 171 (237)
T PRK12742 143 MAAYAASKSALQGMARGLARDFG--PRGITI 171 (237)
T ss_pred CcchHHhHHHHHHHHHHHHHHHh--hhCeEE
Confidence 44678888888888888888765 344654
|
|
| >PRK12939 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=98.34 E-value=3.3e-06 Score=74.90 Aligned_cols=157 Identities=16% Similarity=0.096 Sum_probs=89.2
Q ss_pred CcEEEEEcCCChhHHHHHHHHHhcccCCCCCCeEEEEEecccchhhhhhhHhhhhhhc--c-CCccceEEeCCHHHHh--
Q 019990 5 PLRVLVTGAAGQIGYALVPMIARGIMLGPDQPVILHMLDIEPAAEALNGVKMELIDAA--F-PLLKGVVATTDVVEAC-- 79 (332)
Q Consensus 5 ~~kI~VtGaaG~IGs~l~~~L~~~~~~~~~~~~~i~l~D~~~~~~~~~~~~~dl~~~~--~-~~~~~v~~~~~~~~a~-- 79 (332)
.++|+||||+|.||++++..|++.|. ++++++++. +.+.....++.... . .+..|+....++.+.+
T Consensus 7 ~~~vlItGa~g~iG~~la~~l~~~G~-------~v~~~~r~~--~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~ 77 (250)
T PRK12939 7 GKRALVTGAARGLGAAFAEALAEAGA-------TVAFNDGLA--AEARELAAALEAAGGRAHAIAADLADPASVQRFFDA 77 (250)
T ss_pred CCEEEEeCCCChHHHHHHHHHHHcCC-------EEEEEeCCH--HHHHHHHHHHHhcCCcEEEEEccCCCHHHHHHHHHH
Confidence 57899999999999999999998875 788888753 23332323332211 0 1122443333332222
Q ss_pred -----CCCcEEEEecCCCCCC---CCChh---HHHhhhHHHHHHHHHHHHhhc--CCCcEEEEEeCChhhHHHHHHHHCC
Q 019990 80 -----KDVNIAVMVGGFPRKE---GMERK---DVMSKNVSIYKAQASALEKHA--APNCKVLVVANPANTNALILKEFAP 146 (332)
Q Consensus 80 -----~~aDiVi~~ag~~~~~---~~~~~---~~~~~N~~~~~~i~~~i~~~~--~~~~~viv~snp~~~~~~~~~~~~~ 146 (332)
.+.|+|||++|..... ..+.. ..+..|......+.+.+..+. .+..+++++|+.... .
T Consensus 78 ~~~~~~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~g~iv~isS~~~~---------~ 148 (250)
T PRK12939 78 AAAALGGLDGLVNNAGITNSKSATELDIDTWDAVMNVNVRGTFLMLRAALPHLRDSGRGRIVNLASDTAL---------W 148 (250)
T ss_pred HHHHcCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCCeEEEEECchhhc---------c
Confidence 4689999999874321 11222 234567776666666654432 123466766652211 1
Q ss_pred CCCCCcEEEeecccHHHHHHHHHHHcCCCCCCeee
Q 019990 147 SIPAKNITCLTRLDHNRAMGQISERLKVHVSDVKN 181 (332)
Q Consensus 147 ~~~~~~i~~~t~l~~~r~~~~~a~~~~v~~~~v~~ 181 (332)
+.+....|+.++....++.+.+++.+. ...++.
T Consensus 149 ~~~~~~~y~~sK~~~~~~~~~l~~~~~--~~~i~v 181 (250)
T PRK12939 149 GAPKLGAYVASKGAVIGMTRSLARELG--GRGITV 181 (250)
T ss_pred CCCCcchHHHHHHHHHHHHHHHHHHHh--hhCEEE
Confidence 122222456677777777777777654 234553
|
|
| >PRK07063 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=98.34 E-value=6e-06 Score=73.94 Aligned_cols=158 Identities=15% Similarity=0.104 Sum_probs=90.8
Q ss_pred CcEEEEEcCCChhHHHHHHHHHhcccCCCCCCeEEEEEecccchhhhhhhHhhhhhh----cc-CCccceEEeCCHHHHh
Q 019990 5 PLRVLVTGAAGQIGYALVPMIARGIMLGPDQPVILHMLDIEPAAEALNGVKMELIDA----AF-PLLKGVVATTDVVEAC 79 (332)
Q Consensus 5 ~~kI~VtGaaG~IGs~l~~~L~~~~~~~~~~~~~i~l~D~~~~~~~~~~~~~dl~~~----~~-~~~~~v~~~~~~~~a~ 79 (332)
.++++||||+|+||.+++..|++.|. +|+++|++. +.+.....++... .. ....|+....++.+++
T Consensus 7 ~k~vlVtGas~gIG~~~a~~l~~~G~-------~vv~~~r~~--~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~ 77 (260)
T PRK07063 7 GKVALVTGAAQGIGAAIARAFAREGA-------AVALADLDA--ALAERAAAAIARDVAGARVLAVPADVTDAASVAAAV 77 (260)
T ss_pred CCEEEEECCCchHHHHHHHHHHHCCC-------EEEEEeCCH--HHHHHHHHHHHhccCCceEEEEEccCCCHHHHHHHH
Confidence 57899999999999999999999885 889998853 2333333333220 00 1123443333333333
Q ss_pred -------CCCcEEEEecCCCCCC---CCChh---HHHhhhHHHHHHHHHHHHhhc--CCCcEEEEEeCChhhHHHHHHHH
Q 019990 80 -------KDVNIAVMVGGFPRKE---GMERK---DVMSKNVSIYKAQASALEKHA--APNCKVLVVANPANTNALILKEF 144 (332)
Q Consensus 80 -------~~aDiVi~~ag~~~~~---~~~~~---~~~~~N~~~~~~i~~~i~~~~--~~~~~viv~snp~~~~~~~~~~~ 144 (332)
...|++||.||..... ..+.. ..+..|......+.+++..+- ...+.+|++|+....
T Consensus 78 ~~~~~~~g~id~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~g~iv~isS~~~~-------- 149 (260)
T PRK07063 78 AAAEEAFGPLDVLVNNAGINVFADPLAMTDEDWRRCFAVDLDGAWNGCRAVLPGMVERGRGSIVNIASTHAF-------- 149 (260)
T ss_pred HHHHHHhCCCcEEEECCCcCCCCChhhCCHHHHHHHHHhhhHHHHHHHHHHHHHHHhhCCeEEEEECChhhc--------
Confidence 3689999999864211 12222 235567665544444433211 123566776653211
Q ss_pred CCCCCCCcEEEeecccHHHHHHHHHHHcCCCCCCeeee
Q 019990 145 APSIPAKNITCLTRLDHNRAMGQISERLKVHVSDVKNV 182 (332)
Q Consensus 145 ~~~~~~~~i~~~t~l~~~r~~~~~a~~~~v~~~~v~~~ 182 (332)
.+.+....|+.++.....+.+.+++.+. +..||..
T Consensus 150 -~~~~~~~~Y~~sKaa~~~~~~~la~el~--~~gIrvn 184 (260)
T PRK07063 150 -KIIPGCFPYPVAKHGLLGLTRALGIEYA--ARNVRVN 184 (260)
T ss_pred -cCCCCchHHHHHHHHHHHHHHHHHHHhC--ccCeEEE
Confidence 1223233567778777788888887764 4567643
|
|
| >PRK06841 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=98.33 E-value=4e-06 Score=74.79 Aligned_cols=151 Identities=19% Similarity=0.190 Sum_probs=86.2
Q ss_pred CCcEEEEEcCCChhHHHHHHHHHhcccCCCCCCeEEEEEecccchhhhhhhHhhhhhhcc-CCccceEEeCCHHHH----
Q 019990 4 NPLRVLVTGAAGQIGYALVPMIARGIMLGPDQPVILHMLDIEPAAEALNGVKMELIDAAF-PLLKGVVATTDVVEA---- 78 (332)
Q Consensus 4 ~~~kI~VtGaaG~IGs~l~~~L~~~~~~~~~~~~~i~l~D~~~~~~~~~~~~~dl~~~~~-~~~~~v~~~~~~~~a---- 78 (332)
..++|+||||+|+||++++..|++.|. +|++++++.. ......++..... ....|+....++.+.
T Consensus 14 ~~k~vlItGas~~IG~~la~~l~~~G~-------~Vi~~~r~~~---~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~ 83 (255)
T PRK06841 14 SGKVAVVTGGASGIGHAIAELFAAKGA-------RVALLDRSED---VAEVAAQLLGGNAKGLVCDVSDSQSVEAAVAAV 83 (255)
T ss_pred CCCEEEEECCCChHHHHHHHHHHHCCC-------EEEEEeCCHH---HHHHHHHhhCCceEEEEecCCCHHHHHHHHHHH
Confidence 457899999999999999999998875 7888887532 1111112211100 111233333233222
Q ss_pred ---hCCCcEEEEecCCCCCC---CCCh---hHHHhhhHHHHHHHHHHHHhhc--CCCcEEEEEeCChhhHHHHHHHHCCC
Q 019990 79 ---CKDVNIAVMVGGFPRKE---GMER---KDVMSKNVSIYKAQASALEKHA--APNCKVLVVANPANTNALILKEFAPS 147 (332)
Q Consensus 79 ---~~~aDiVi~~ag~~~~~---~~~~---~~~~~~N~~~~~~i~~~i~~~~--~~~~~viv~snp~~~~~~~~~~~~~~ 147 (332)
+...|+|||.+|..... ..+. ...+..|......+.+.+..+. ....+++++|+-... .+
T Consensus 84 ~~~~~~~d~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~iv~~sS~~~~---------~~ 154 (255)
T PRK06841 84 ISAFGRIDILVNSAGVALLAPAEDVSEEDWDKTIDINLKGSFLMAQAVGRHMIAAGGGKIVNLASQAGV---------VA 154 (255)
T ss_pred HHHhCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHhcHHHHHHHHHHHHHHHhcCCceEEEEcchhhc---------cC
Confidence 23679999999864311 1121 2245677777767776665431 123466766652211 12
Q ss_pred CCCCcEEEeecccHHHHHHHHHHHcC
Q 019990 148 IPAKNITCLTRLDHNRAMGQISERLK 173 (332)
Q Consensus 148 ~~~~~i~~~t~l~~~r~~~~~a~~~~ 173 (332)
.+....|+.++.....+...+++.++
T Consensus 155 ~~~~~~Y~~sK~a~~~~~~~la~e~~ 180 (255)
T PRK06841 155 LERHVAYCASKAGVVGMTKVLALEWG 180 (255)
T ss_pred CCCCchHHHHHHHHHHHHHHHHHHHH
Confidence 33333567777766777777777754
|
|
| >PRK06398 aldose dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=98.33 E-value=9.4e-06 Score=72.81 Aligned_cols=154 Identities=13% Similarity=0.093 Sum_probs=90.7
Q ss_pred CCcEEEEEcCCChhHHHHHHHHHhcccCCCCCCeEEEEEecccchhhhhhhHhhhhhhccCCccceEEeCCHHHH-----
Q 019990 4 NPLRVLVTGAAGQIGYALVPMIARGIMLGPDQPVILHMLDIEPAAEALNGVKMELIDAAFPLLKGVVATTDVVEA----- 78 (332)
Q Consensus 4 ~~~kI~VtGaaG~IGs~l~~~L~~~~~~~~~~~~~i~l~D~~~~~~~~~~~~~dl~~~~~~~~~~v~~~~~~~~a----- 78 (332)
+.++++||||+|.||.+++..|++.|. +|++++++... .. .+. ....|+....++.++
T Consensus 5 ~gk~vlItGas~gIG~~ia~~l~~~G~-------~Vi~~~r~~~~--~~----~~~----~~~~D~~~~~~i~~~~~~~~ 67 (258)
T PRK06398 5 KDKVAIVTGGSQGIGKAVVNRLKEEGS-------NVINFDIKEPS--YN----DVD----YFKVDVSNKEQVIKGIDYVI 67 (258)
T ss_pred CCCEEEEECCCchHHHHHHHHHHHCCC-------eEEEEeCCccc--cC----ceE----EEEccCCCHHHHHHHHHHHH
Confidence 457899999999999999999999885 78888875321 10 000 011233332233222
Q ss_pred --hCCCcEEEEecCCCCC---CCCChh---HHHhhhHHHHHHHHHHHHhhc--CCCcEEEEEeCChhhHHHHHHHHCCCC
Q 019990 79 --CKDVNIAVMVGGFPRK---EGMERK---DVMSKNVSIYKAQASALEKHA--APNCKVLVVANPANTNALILKEFAPSI 148 (332)
Q Consensus 79 --~~~aDiVi~~ag~~~~---~~~~~~---~~~~~N~~~~~~i~~~i~~~~--~~~~~viv~snp~~~~~~~~~~~~~~~ 148 (332)
+...|++||.||.... ...+.+ ..+..|+.....+.+++..+. ....++|++|+-... .+.
T Consensus 68 ~~~~~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~g~iv~isS~~~~---------~~~ 138 (258)
T PRK06398 68 SKYGRIDILVNNAGIESYGAIHAVEEDEWDRIINVNVNGIFLMSKYTIPYMLKQDKGVIINIASVQSF---------AVT 138 (258)
T ss_pred HHcCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCCeEEEEeCcchhc---------cCC
Confidence 2368999999987421 112222 245677776655555544321 124566776652211 122
Q ss_pred CCCcEEEeecccHHHHHHHHHHHcCCCCCCeeeeEEEec
Q 019990 149 PAKNITCLTRLDHNRAMGQISERLKVHVSDVKNVIIWGN 187 (332)
Q Consensus 149 ~~~~i~~~t~l~~~r~~~~~a~~~~v~~~~v~~~~V~G~ 187 (332)
+....|+.++.....+.+.++..++ +. |+. +.+.+
T Consensus 139 ~~~~~Y~~sKaal~~~~~~la~e~~--~~-i~v-n~i~P 173 (258)
T PRK06398 139 RNAAAYVTSKHAVLGLTRSIAVDYA--PT-IRC-VAVCP 173 (258)
T ss_pred CCCchhhhhHHHHHHHHHHHHHHhC--CC-CEE-EEEec
Confidence 3344678888888888888888876 23 664 33443
|
|
| >PRK05866 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=98.33 E-value=1.1e-05 Score=73.89 Aligned_cols=151 Identities=16% Similarity=0.129 Sum_probs=85.4
Q ss_pred CCcEEEEEcCCChhHHHHHHHHHhcccCCCCCCeEEEEEecccchhhhhhhHhhhhhhc---cCCccceEEeCCHHHHhC
Q 019990 4 NPLRVLVTGAAGQIGYALVPMIARGIMLGPDQPVILHMLDIEPAAEALNGVKMELIDAA---FPLLKGVVATTDVVEACK 80 (332)
Q Consensus 4 ~~~kI~VtGaaG~IGs~l~~~L~~~~~~~~~~~~~i~l~D~~~~~~~~~~~~~dl~~~~---~~~~~~v~~~~~~~~a~~ 80 (332)
+.++|+||||+|+||.+++..|++.|. +|.+++++. +.+.....++.... .....|+....++.+.++
T Consensus 39 ~~k~vlItGasggIG~~la~~La~~G~-------~Vi~~~R~~--~~l~~~~~~l~~~~~~~~~~~~Dl~d~~~v~~~~~ 109 (293)
T PRK05866 39 TGKRILLTGASSGIGEAAAEQFARRGA-------TVVAVARRE--DLLDAVADRITRAGGDAMAVPCDLSDLDAVDALVA 109 (293)
T ss_pred CCCEEEEeCCCcHHHHHHHHHHHHCCC-------EEEEEECCH--HHHHHHHHHHHhcCCcEEEEEccCCCHHHHHHHHH
Confidence 347899999999999999999998875 899999863 23333322332111 011234433333333333
Q ss_pred -------CCcEEEEecCCCCCC--CC---Ch---hHHHhhhHHHHHHHH----HHHHhhcCCCcEEEEEeCChhhHHHHH
Q 019990 81 -------DVNIAVMVGGFPRKE--GM---ER---KDVMSKNVSIYKAQA----SALEKHAAPNCKVLVVANPANTNALIL 141 (332)
Q Consensus 81 -------~aDiVi~~ag~~~~~--~~---~~---~~~~~~N~~~~~~i~----~~i~~~~~~~~~viv~snp~~~~~~~~ 141 (332)
..|++|+.||..... .+ +. ...+..|......+. ..+++.+ ...++++|+- .. .
T Consensus 110 ~~~~~~g~id~li~~AG~~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~~--~g~iv~isS~-~~----~ 182 (293)
T PRK05866 110 DVEKRIGGVDILINNAGRSIRRPLAESLDRWHDVERTMVLNYYAPLRLIRGLAPGMLERG--DGHIINVATW-GV----L 182 (293)
T ss_pred HHHHHcCCCCEEEECCCCCCCcchhhccccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC--CcEEEEECCh-hh----c
Confidence 789999999864211 11 11 124556665544444 4444432 3466666642 11 0
Q ss_pred HHHCCCCCCCcEEEeecccHHHHHHHHHHHcC
Q 019990 142 KEFAPSIPAKNITCLTRLDHNRAMGQISERLK 173 (332)
Q Consensus 142 ~~~~~~~~~~~i~~~t~l~~~r~~~~~a~~~~ 173 (332)
. ...+....|+.++.....+...++..+.
T Consensus 183 ~---~~~p~~~~Y~asKaal~~l~~~la~e~~ 211 (293)
T PRK05866 183 S---EASPLFSVYNASKAALSAVSRVIETEWG 211 (293)
T ss_pred C---CCCCCcchHHHHHHHHHHHHHHHHHHhc
Confidence 0 1123233577788777777777777654
|
|
| >PRK07097 gluconate 5-dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=98.31 E-value=5.5e-06 Score=74.49 Aligned_cols=150 Identities=14% Similarity=0.129 Sum_probs=86.3
Q ss_pred CCcEEEEEcCCChhHHHHHHHHHhcccCCCCCCeEEEEEecccchhhhhhhHhhhhhhc--c-CCccceEEeCCHHHHh-
Q 019990 4 NPLRVLVTGAAGQIGYALVPMIARGIMLGPDQPVILHMLDIEPAAEALNGVKMELIDAA--F-PLLKGVVATTDVVEAC- 79 (332)
Q Consensus 4 ~~~kI~VtGaaG~IGs~l~~~L~~~~~~~~~~~~~i~l~D~~~~~~~~~~~~~dl~~~~--~-~~~~~v~~~~~~~~a~- 79 (332)
..++++||||+|+||.+++..|++.|. ++++.+... +.+.....++.... . .+..|++...++.+++
T Consensus 9 ~~k~~lItGa~~~iG~~ia~~l~~~G~-------~vv~~~~~~--~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~ 79 (265)
T PRK07097 9 KGKIALITGASYGIGFAIAKAYAKAGA-------TIVFNDINQ--ELVDKGLAAYRELGIEAHGYVCDVTDEDGVQAMVS 79 (265)
T ss_pred CCCEEEEeCCCchHHHHHHHHHHHCCC-------eEEEEeCCH--HHHHHHHHHHHhcCCceEEEEcCCCCHHHHHHHHH
Confidence 357899999999999999999998885 788888753 23333223332211 0 1123443333333332
Q ss_pred ------CCCcEEEEecCCCCC-C--CCChh---HHHhhhHHHHHHHHH----HHHhhcCCCcEEEEEeCChhhHHHHHHH
Q 019990 80 ------KDVNIAVMVGGFPRK-E--GMERK---DVMSKNVSIYKAQAS----ALEKHAAPNCKVLVVANPANTNALILKE 143 (332)
Q Consensus 80 ------~~aDiVi~~ag~~~~-~--~~~~~---~~~~~N~~~~~~i~~----~i~~~~~~~~~viv~snp~~~~~~~~~~ 143 (332)
...|++||.||.... + ..+.. ..+..|......+.+ .+.+. ...+++++++....
T Consensus 80 ~~~~~~~~id~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~--~~g~iv~isS~~~~------- 150 (265)
T PRK07097 80 QIEKEVGVIDILVNNAGIIKRIPMLEMSAEDFRQVIDIDLNAPFIVSKAVIPSMIKK--GHGKIINICSMMSE------- 150 (265)
T ss_pred HHHHhCCCCCEEEECCCCCCCCCcccCCHHHHHHHHHhhhHHHHHHHHHHHHHHHhc--CCcEEEEEcCcccc-------
Confidence 347999999987421 1 12222 234556654443333 34332 24577777764321
Q ss_pred HCCCCCCCcEEEeecccHHHHHHHHHHHcC
Q 019990 144 FAPSIPAKNITCLTRLDHNRAMGQISERLK 173 (332)
Q Consensus 144 ~~~~~~~~~i~~~t~l~~~r~~~~~a~~~~ 173 (332)
.+.+....|+.++.....+.+.+++.++
T Consensus 151 --~~~~~~~~Y~~sKaal~~l~~~la~e~~ 178 (265)
T PRK07097 151 --LGRETVSAYAAAKGGLKMLTKNIASEYG 178 (265)
T ss_pred --CCCCCCccHHHHHHHHHHHHHHHHHHhh
Confidence 1223334678888777788888887764
|
|
| >PRK08339 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=98.31 E-value=1.7e-05 Score=71.44 Aligned_cols=156 Identities=14% Similarity=0.227 Sum_probs=90.3
Q ss_pred CCcEEEEEcCCChhHHHHHHHHHhcccCCCCCCeEEEEEecccchhhhhhhHhhhhhh---cc-CCccceEEeCCHHHHh
Q 019990 4 NPLRVLVTGAAGQIGYALVPMIARGIMLGPDQPVILHMLDIEPAAEALNGVKMELIDA---AF-PLLKGVVATTDVVEAC 79 (332)
Q Consensus 4 ~~~kI~VtGaaG~IGs~l~~~L~~~~~~~~~~~~~i~l~D~~~~~~~~~~~~~dl~~~---~~-~~~~~v~~~~~~~~a~ 79 (332)
+.+.++||||+|.||.+++..|++.|. +|.++|++. +.+.....++... .. .+..|+....++.+.+
T Consensus 7 ~~k~~lItGas~gIG~aia~~l~~~G~-------~V~~~~r~~--~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~i~~~~ 77 (263)
T PRK08339 7 SGKLAFTTASSKGIGFGVARVLARAGA-------DVILLSRNE--ENLKKAREKIKSESNVDVSYIVADLTKREDLERTV 77 (263)
T ss_pred CCCEEEEeCCCCcHHHHHHHHHHHCCC-------EEEEEeCCH--HHHHHHHHHHHhhcCCceEEEEecCCCHHHHHHHH
Confidence 346789999999999999999999885 789998753 2333333333221 11 1123444433333333
Q ss_pred ------CCCcEEEEecCCCCCC---CCChhH---HHhhhHH----HHHHHHHHHHhhcCCCcEEEEEeCChhhHHHHHHH
Q 019990 80 ------KDVNIAVMVGGFPRKE---GMERKD---VMSKNVS----IYKAQASALEKHAAPNCKVLVVANPANTNALILKE 143 (332)
Q Consensus 80 ------~~aDiVi~~ag~~~~~---~~~~~~---~~~~N~~----~~~~i~~~i~~~~~~~~~viv~snp~~~~~~~~~~ 143 (332)
...|++|+.+|..... ..+.++ .+..|+. .++.+++.+++.. .+++|++|+....
T Consensus 78 ~~~~~~g~iD~lv~nag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~l~~m~~~~--~g~Ii~isS~~~~------- 148 (263)
T PRK08339 78 KELKNIGEPDIFFFSTGGPKPGYFMEMSMEDWEGAVKLLLYPAVYLTRALVPAMERKG--FGRIIYSTSVAIK------- 148 (263)
T ss_pred HHHHhhCCCcEEEECCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcC--CCEEEEEcCcccc-------
Confidence 2579999999874321 122222 3455543 3456666665542 3577777753211
Q ss_pred HCCCCCCCcEEEeecccHHHHHHHHHHHcCCCCCCeee
Q 019990 144 FAPSIPAKNITCLTRLDHNRAMGQISERLKVHVSDVKN 181 (332)
Q Consensus 144 ~~~~~~~~~i~~~t~l~~~r~~~~~a~~~~v~~~~v~~ 181 (332)
.+.+....|+.++-.-..+.+.+++.++ +..||.
T Consensus 149 --~~~~~~~~y~asKaal~~l~~~la~el~--~~gIrV 182 (263)
T PRK08339 149 --EPIPNIALSNVVRISMAGLVRTLAKELG--PKGITV 182 (263)
T ss_pred --CCCCcchhhHHHHHHHHHHHHHHHHHhc--ccCeEE
Confidence 1122222466677666777777887765 456663
|
|
| >PRK07035 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=98.30 E-value=7.7e-06 Score=72.83 Aligned_cols=159 Identities=13% Similarity=0.056 Sum_probs=89.1
Q ss_pred CCCCcEEEEEcCCChhHHHHHHHHHhcccCCCCCCeEEEEEecccchhhhhhhHhhhhhhcc---CCccceEEeCCHHHH
Q 019990 2 AKNPLRVLVTGAAGQIGYALVPMIARGIMLGPDQPVILHMLDIEPAAEALNGVKMELIDAAF---PLLKGVVATTDVVEA 78 (332)
Q Consensus 2 ~~~~~kI~VtGaaG~IGs~l~~~L~~~~~~~~~~~~~i~l~D~~~~~~~~~~~~~dl~~~~~---~~~~~v~~~~~~~~a 78 (332)
+.+.++|+||||+|+||.+++..|.+.|. +|++++++. +.+.....++.+... ....++....+..++
T Consensus 5 ~l~~k~vlItGas~gIG~~l~~~l~~~G~-------~Vi~~~r~~--~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~ 75 (252)
T PRK07035 5 DLTGKIALVTGASRGIGEAIAKLLAQQGA-------HVIVSSRKL--DGCQAVADAIVAAGGKAEALACHIGEMEQIDAL 75 (252)
T ss_pred ccCCCEEEEECCCcHHHHHHHHHHHHCCC-------EEEEEeCCH--HHHHHHHHHHHhcCCeEEEEEcCCCCHHHHHHH
Confidence 34557899999999999999999998875 799999753 233333333322110 011233322222222
Q ss_pred -------hCCCcEEEEecCCCC--C--CCCChh---HHHhhhHHHHHHHHHHHHhhc--CCCcEEEEEeCChhhHHHHHH
Q 019990 79 -------CKDVNIAVMVGGFPR--K--EGMERK---DVMSKNVSIYKAQASALEKHA--APNCKVLVVANPANTNALILK 142 (332)
Q Consensus 79 -------~~~aDiVi~~ag~~~--~--~~~~~~---~~~~~N~~~~~~i~~~i~~~~--~~~~~viv~snp~~~~~~~~~ 142 (332)
+...|++||.||... . ...+.+ ..++.|......+.+++..+. ....+++++++....
T Consensus 76 ~~~~~~~~~~id~li~~ag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~iv~~sS~~~~------ 149 (252)
T PRK07035 76 FAHIRERHGRLDILVNNAAANPYFGHILDTDLGAFQKTVDVNIRGYFFMSVEAGKLMKEQGGGSIVNVASVNGV------ 149 (252)
T ss_pred HHHHHHHcCCCCEEEECCCcCCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhCCCcEEEEECchhhc------
Confidence 235799999998521 1 112222 245667666555554443321 123466666642111
Q ss_pred HHCCCCCCCcEEEeecccHHHHHHHHHHHcCCCCCCee
Q 019990 143 EFAPSIPAKNITCLTRLDHNRAMGQISERLKVHVSDVK 180 (332)
Q Consensus 143 ~~~~~~~~~~i~~~t~l~~~r~~~~~a~~~~v~~~~v~ 180 (332)
.+.+....|+.+|.....+...+++.++ +..|+
T Consensus 150 ---~~~~~~~~Y~~sK~al~~~~~~l~~e~~--~~gi~ 182 (252)
T PRK07035 150 ---SPGDFQGIYSITKAAVISMTKAFAKECA--PFGIR 182 (252)
T ss_pred ---CCCCCCcchHHHHHHHHHHHHHHHHHHh--hcCEE
Confidence 1123333577788777777777877764 34455
|
|
| >PRK06181 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=98.30 E-value=5.7e-06 Score=74.16 Aligned_cols=149 Identities=20% Similarity=0.171 Sum_probs=83.8
Q ss_pred cEEEEEcCCChhHHHHHHHHHhcccCCCCCCeEEEEEecccchhhhhhhHhhhhhhcc---CCccceEEeCCHHHHh---
Q 019990 6 LRVLVTGAAGQIGYALVPMIARGIMLGPDQPVILHMLDIEPAAEALNGVKMELIDAAF---PLLKGVVATTDVVEAC--- 79 (332)
Q Consensus 6 ~kI~VtGaaG~IGs~l~~~L~~~~~~~~~~~~~i~l~D~~~~~~~~~~~~~dl~~~~~---~~~~~v~~~~~~~~a~--- 79 (332)
++|+||||+|++|++++..|++.+. +|.+++++. +.......++..... ....|+.....+.+++
T Consensus 2 ~~vlVtGasg~iG~~la~~l~~~g~-------~Vi~~~r~~--~~~~~~~~~l~~~~~~~~~~~~Dl~~~~~~~~~~~~~ 72 (263)
T PRK06181 2 KVVIITGASEGIGRALAVRLARAGA-------QLVLAARNE--TRLASLAQELADHGGEALVVPTDVSDAEACERLIEAA 72 (263)
T ss_pred CEEEEecCCcHHHHHHHHHHHHCCC-------EEEEEeCCH--HHHHHHHHHHHhcCCcEEEEEccCCCHHHHHHHHHHH
Confidence 5799999999999999999998875 788888753 222222223322110 0112333333333332
Q ss_pred ----CCCcEEEEecCCCCCC---CC-Ch---hHHHhhhHHHHHHHHHHHHhhc-CCCcEEEEEeCChhhHHHHHHHHCCC
Q 019990 80 ----KDVNIAVMVGGFPRKE---GM-ER---KDVMSKNVSIYKAQASALEKHA-APNCKVLVVANPANTNALILKEFAPS 147 (332)
Q Consensus 80 ----~~aDiVi~~ag~~~~~---~~-~~---~~~~~~N~~~~~~i~~~i~~~~-~~~~~viv~snp~~~~~~~~~~~~~~ 147 (332)
.+.|+|||++|..... .. +. ...++.|......+++.+..+- ....+++++|+.... .+
T Consensus 73 ~~~~~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~~~iv~~sS~~~~---------~~ 143 (263)
T PRK06181 73 VARFGGIDILVNNAGITMWSRFDELTDLSVFERVMRVNYLGAVYCTHAALPHLKASRGQIVVVSSLAGL---------TG 143 (263)
T ss_pred HHHcCCCCEEEECCCcccccchhccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCEEEEEeccccc---------CC
Confidence 3679999999864321 11 22 2346778887777777765431 112456666654321 11
Q ss_pred CCCCcEEEeecccHHHHHHHHHHHc
Q 019990 148 IPAKNITCLTRLDHNRAMGQISERL 172 (332)
Q Consensus 148 ~~~~~i~~~t~l~~~r~~~~~a~~~ 172 (332)
.++...|+.++.....+...++..+
T Consensus 144 ~~~~~~Y~~sK~~~~~~~~~l~~~~ 168 (263)
T PRK06181 144 VPTRSGYAASKHALHGFFDSLRIEL 168 (263)
T ss_pred CCCccHHHHHHHHHHHHHHHHHHHh
Confidence 2222345666665555655555554
|
|
| >PRK12481 2-deoxy-D-gluconate 3-dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=98.30 E-value=5.6e-06 Score=73.96 Aligned_cols=155 Identities=13% Similarity=0.131 Sum_probs=88.6
Q ss_pred CCcEEEEEcCCChhHHHHHHHHHhcccCCCCCCeEEEEEecccchhhhhhhHhhhhhhc--c-CCccceEEeCCHHHHh-
Q 019990 4 NPLRVLVTGAAGQIGYALVPMIARGIMLGPDQPVILHMLDIEPAAEALNGVKMELIDAA--F-PLLKGVVATTDVVEAC- 79 (332)
Q Consensus 4 ~~~kI~VtGaaG~IGs~l~~~L~~~~~~~~~~~~~i~l~D~~~~~~~~~~~~~dl~~~~--~-~~~~~v~~~~~~~~a~- 79 (332)
+.++++||||+|.||.+++..|++.|. +|++++++.. +.+. ..+.... . ....|+....+..+.+
T Consensus 7 ~~k~~lItGas~gIG~aia~~l~~~G~-------~vv~~~~~~~-~~~~---~~~~~~~~~~~~~~~Dl~~~~~~~~~~~ 75 (251)
T PRK12481 7 NGKVAIITGCNTGLGQGMAIGLAKAGA-------DIVGVGVAEA-PETQ---AQVEALGRKFHFITADLIQQKDIDSIVS 75 (251)
T ss_pred CCCEEEEeCCCchHHHHHHHHHHHCCC-------EEEEecCchH-HHHH---HHHHHcCCeEEEEEeCCCCHHHHHHHHH
Confidence 457899999999999999999999886 7888886431 1111 1121111 1 1123444333333333
Q ss_pred ------CCCcEEEEecCCCCCC---CCChh---HHHhhhHHHHHHHHHH----HHhhcCCCcEEEEEeCChhhHHHHHHH
Q 019990 80 ------KDVNIAVMVGGFPRKE---GMERK---DVMSKNVSIYKAQASA----LEKHAAPNCKVLVVANPANTNALILKE 143 (332)
Q Consensus 80 ------~~aDiVi~~ag~~~~~---~~~~~---~~~~~N~~~~~~i~~~----i~~~~~~~~~viv~snp~~~~~~~~~~ 143 (332)
...|++|+.||..... ..+.. ..+..|+.....+.+. +.+.. ..+++|++++....
T Consensus 76 ~~~~~~g~iD~lv~~ag~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~~~~~~~~~-~~g~ii~isS~~~~------- 147 (251)
T PRK12481 76 QAVEVMGHIDILINNAGIIRRQDLLEFGNKDWDDVININQKTVFFLSQAVAKQFVKQG-NGGKIINIASMLSF------- 147 (251)
T ss_pred HHHHHcCCCCEEEECCCcCCCCCcccCCHHHHHHHheeCcHHHHHHHHHHHHHHHHcC-CCCEEEEeCChhhc-------
Confidence 3579999999874321 11222 3456776555444444 33322 23567777653221
Q ss_pred HCCCCCCCcEEEeecccHHHHHHHHHHHcCCCCCCeee
Q 019990 144 FAPSIPAKNITCLTRLDHNRAMGQISERLKVHVSDVKN 181 (332)
Q Consensus 144 ~~~~~~~~~i~~~t~l~~~r~~~~~a~~~~v~~~~v~~ 181 (332)
.+.+....|+.+|.....+.+.++..+. +..|+.
T Consensus 148 --~~~~~~~~Y~asK~a~~~l~~~la~e~~--~~girv 181 (251)
T PRK12481 148 --QGGIRVPSYTASKSAVMGLTRALATELS--QYNINV 181 (251)
T ss_pred --CCCCCCcchHHHHHHHHHHHHHHHHHHh--hcCeEE
Confidence 1122223578888888888888887754 345664
|
|
| >PRK08993 2-deoxy-D-gluconate 3-dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=98.29 E-value=1.3e-05 Score=71.67 Aligned_cols=156 Identities=15% Similarity=0.135 Sum_probs=88.2
Q ss_pred CCcEEEEEcCCChhHHHHHHHHHhcccCCCCCCeEEEEEecccchhhhhhhHhhhhhhc--c-CCccceEEeCCHHHHh-
Q 019990 4 NPLRVLVTGAAGQIGYALVPMIARGIMLGPDQPVILHMLDIEPAAEALNGVKMELIDAA--F-PLLKGVVATTDVVEAC- 79 (332)
Q Consensus 4 ~~~kI~VtGaaG~IGs~l~~~L~~~~~~~~~~~~~i~l~D~~~~~~~~~~~~~dl~~~~--~-~~~~~v~~~~~~~~a~- 79 (332)
..+.++||||+|.||++++..|++.|. +|+++|.....+ ...++.... . ....|+....++.+.+
T Consensus 9 ~~k~~lItG~~~gIG~a~a~~l~~~G~-------~vv~~~~~~~~~----~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~ 77 (253)
T PRK08993 9 EGKVAVVTGCDTGLGQGMALGLAEAGC-------DIVGINIVEPTE----TIEQVTALGRRFLSLTADLRKIDGIPALLE 77 (253)
T ss_pred CCCEEEEECCCchHHHHHHHHHHHCCC-------EEEEecCcchHH----HHHHHHhcCCeEEEEECCCCCHHHHHHHHH
Confidence 356899999999999999999998875 788887643211 111221111 0 1122443333333322
Q ss_pred ------CCCcEEEEecCCCCCC---CCCh---hHHHhhhHHHHHHHHHHHHhhc---CCCcEEEEEeCChhhHHHHHHHH
Q 019990 80 ------KDVNIAVMVGGFPRKE---GMER---KDVMSKNVSIYKAQASALEKHA---APNCKVLVVANPANTNALILKEF 144 (332)
Q Consensus 80 ------~~aDiVi~~ag~~~~~---~~~~---~~~~~~N~~~~~~i~~~i~~~~---~~~~~viv~snp~~~~~~~~~~~ 144 (332)
...|++||.||..... +.+. ...+..|......+.+.+...- .+.+.++++|+-.. .
T Consensus 78 ~~~~~~~~~D~li~~Ag~~~~~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~~~g~iv~isS~~~---~----- 149 (253)
T PRK08993 78 RAVAEFGHIDILVNNAGLIRREDAIEFSEKDWDDVMNLNIKSVFFMSQAAAKHFIAQGNGGKIINIASMLS---F----- 149 (253)
T ss_pred HHHHHhCCCCEEEECCCCCCCCCcccCCHHHHHHHHhhhhHHHHHHHHHHHHHHHhCCCCeEEEEECchhh---c-----
Confidence 3589999999874311 1122 2356678776655555544321 12356676665221 1
Q ss_pred CCCCCCCcEEEeecccHHHHHHHHHHHcCCCCCCeee
Q 019990 145 APSIPAKNITCLTRLDHNRAMGQISERLKVHVSDVKN 181 (332)
Q Consensus 145 ~~~~~~~~i~~~t~l~~~r~~~~~a~~~~v~~~~v~~ 181 (332)
.+.+....|+.+|.....+.+.++..+. +..|+.
T Consensus 150 -~~~~~~~~Y~~sKaa~~~~~~~la~e~~--~~gi~v 183 (253)
T PRK08993 150 -QGGIRVPSYTASKSGVMGVTRLMANEWA--KHNINV 183 (253)
T ss_pred -cCCCCCcchHHHHHHHHHHHHHHHHHhh--hhCeEE
Confidence 1112223578888777777777777754 445654
|
|
| >PRK07023 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=98.29 E-value=2.1e-06 Score=76.11 Aligned_cols=156 Identities=13% Similarity=0.118 Sum_probs=83.7
Q ss_pred CcEEEEEcCCChhHHHHHHHHHhcccCCCCCCeEEEEEecccchhhhhhhHhhhhhhccCCccceEEeCCHHHHh-----
Q 019990 5 PLRVLVTGAAGQIGYALVPMIARGIMLGPDQPVILHMLDIEPAAEALNGVKMELIDAAFPLLKGVVATTDVVEAC----- 79 (332)
Q Consensus 5 ~~kI~VtGaaG~IGs~l~~~L~~~~~~~~~~~~~i~l~D~~~~~~~~~~~~~dl~~~~~~~~~~v~~~~~~~~a~----- 79 (332)
||+|+||||+|+||++++..|++.|. ++.+++++...+ + .............|+....++.+++
T Consensus 1 ~~~vlItGasggiG~~ia~~l~~~G~-------~v~~~~r~~~~~-~---~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~ 69 (243)
T PRK07023 1 AVRAIVTGHSRGLGAALAEQLLQPGI-------AVLGVARSRHPS-L---AAAAGERLAEVELDLSDAAAAAAWLAGDLL 69 (243)
T ss_pred CceEEEecCCcchHHHHHHHHHhCCC-------EEEEEecCcchh-h---hhccCCeEEEEEeccCCHHHHHHHHHHHHH
Confidence 46899999999999999999998875 788888754211 1 0000000001122333333333322
Q ss_pred ------CCCcEEEEecCCCCC--C--CCCh---hHHHhhhHHHHHHHHHHHHhhc--CCCcEEEEEeCChhhHHHHHHHH
Q 019990 80 ------KDVNIAVMVGGFPRK--E--GMER---KDVMSKNVSIYKAQASALEKHA--APNCKVLVVANPANTNALILKEF 144 (332)
Q Consensus 80 ------~~aDiVi~~ag~~~~--~--~~~~---~~~~~~N~~~~~~i~~~i~~~~--~~~~~viv~snp~~~~~~~~~~~ 144 (332)
...|++||.+|.... + ..+. .+.+..|+.....+.+.+.+.. ....+++++|+....
T Consensus 70 ~~~~~~~~~~~~v~~ag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~iv~isS~~~~-------- 141 (243)
T PRK07023 70 AAFVDGASRVLLINNAGTVEPIGPLATLDAAAIARAVGLNVAAPLMLTAALAQAASDAAERRILHISSGAAR-------- 141 (243)
T ss_pred HHhccCCCceEEEEcCcccCCCCccccCCHHHHHHHeeeeehHHHHHHHHHHHHhhccCCCEEEEEeChhhc--------
Confidence 146899999986321 1 1122 2345667766444444443321 123466666652110
Q ss_pred CCCCCCCcEEEeecccHHHHHHHHHHHcCCCCCCeeeeE
Q 019990 145 APSIPAKNITCLTRLDHNRAMGQISERLKVHVSDVKNVI 183 (332)
Q Consensus 145 ~~~~~~~~i~~~t~l~~~r~~~~~a~~~~v~~~~v~~~~ 183 (332)
.+.+....|+.++...+.+...++.. .+..++...
T Consensus 142 -~~~~~~~~Y~~sK~a~~~~~~~~~~~---~~~~i~v~~ 176 (243)
T PRK07023 142 -NAYAGWSVYCATKAALDHHARAVALD---ANRALRIVS 176 (243)
T ss_pred -CCCCCchHHHHHHHHHHHHHHHHHhc---CCCCcEEEE
Confidence 12333335666776666666666655 345566443
|
|
| >PRK07109 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=98.29 E-value=1.2e-05 Score=75.15 Aligned_cols=159 Identities=17% Similarity=0.117 Sum_probs=89.2
Q ss_pred CcEEEEEcCCChhHHHHHHHHHhcccCCCCCCeEEEEEecccchhhhhhhHhhhhhhcc---CCccceEEeCCHHHH---
Q 019990 5 PLRVLVTGAAGQIGYALVPMIARGIMLGPDQPVILHMLDIEPAAEALNGVKMELIDAAF---PLLKGVVATTDVVEA--- 78 (332)
Q Consensus 5 ~~kI~VtGaaG~IGs~l~~~L~~~~~~~~~~~~~i~l~D~~~~~~~~~~~~~dl~~~~~---~~~~~v~~~~~~~~a--- 78 (332)
+++|+||||+|.||.+++..|++.|. +|++++++. +.+.....++..... ....|+....++.++
T Consensus 8 ~k~vlITGas~gIG~~la~~la~~G~-------~Vvl~~R~~--~~l~~~~~~l~~~g~~~~~v~~Dv~d~~~v~~~~~~ 78 (334)
T PRK07109 8 RQVVVITGASAGVGRATARAFARRGA-------KVVLLARGE--EGLEALAAEIRAAGGEALAVVADVADAEAVQAAADR 78 (334)
T ss_pred CCEEEEECCCCHHHHHHHHHHHHCCC-------EEEEEECCH--HHHHHHHHHHHHcCCcEEEEEecCCCHHHHHHHHHH
Confidence 46899999999999999999998885 789998753 233333333322110 112344433333333
Q ss_pred ----hCCCcEEEEecCCCCCC---CCChh---HHHhhhHH----HHHHHHHHHHhhcCCCcEEEEEeCChhhHHHHHHHH
Q 019990 79 ----CKDVNIAVMVGGFPRKE---GMERK---DVMSKNVS----IYKAQASALEKHAAPNCKVLVVANPANTNALILKEF 144 (332)
Q Consensus 79 ----~~~aDiVi~~ag~~~~~---~~~~~---~~~~~N~~----~~~~i~~~i~~~~~~~~~viv~snp~~~~~~~~~~~ 144 (332)
+...|++|+.||..... ..+.+ ..++.|.. .++.+++.+.+.. ...+|++|+-...
T Consensus 79 ~~~~~g~iD~lInnAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~l~~~~~~~--~g~iV~isS~~~~-------- 148 (334)
T PRK07109 79 AEEELGPIDTWVNNAMVTVFGPFEDVTPEEFRRVTEVTYLGVVHGTLAALRHMRPRD--RGAIIQVGSALAY-------- 148 (334)
T ss_pred HHHHCCCCCEEEECCCcCCCCchhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcC--CcEEEEeCChhhc--------
Confidence 23689999999863211 12222 23445543 3445555555532 3466766653211
Q ss_pred CCCCCCCcEEEeecccHHHHHHHHHHHcCCCCCCeeeeE
Q 019990 145 APSIPAKNITCLTRLDHNRAMGQISERLKVHVSDVKNVI 183 (332)
Q Consensus 145 ~~~~~~~~i~~~t~l~~~r~~~~~a~~~~v~~~~v~~~~ 183 (332)
.+.+....|+.+|.....+...++..+......|+...
T Consensus 149 -~~~~~~~~Y~asK~a~~~~~~~l~~el~~~~~~I~v~~ 186 (334)
T PRK07109 149 -RSIPLQSAYCAAKHAIRGFTDSLRCELLHDGSPVSVTM 186 (334)
T ss_pred -cCCCcchHHHHHHHHHHHHHHHHHHHHhhcCCCeEEEE
Confidence 11222234566776666777777766654434566443
|
|
| >PLN00141 Tic62-NAD(P)-related group II protein; Provisional | Back alignment and domain information |
|---|
Probab=98.29 E-value=4.1e-06 Score=74.87 Aligned_cols=114 Identities=17% Similarity=0.152 Sum_probs=68.8
Q ss_pred CCcEEEEEcCCChhHHHHHHHHHhcccCCCCCCeEEEEEecccchhhhhhhHhhhhhhcc-CCccceEE-eCCHHHHh-C
Q 019990 4 NPLRVLVTGAAGQIGYALVPMIARGIMLGPDQPVILHMLDIEPAAEALNGVKMELIDAAF-PLLKGVVA-TTDVVEAC-K 80 (332)
Q Consensus 4 ~~~kI~VtGaaG~IGs~l~~~L~~~~~~~~~~~~~i~l~D~~~~~~~~~~~~~dl~~~~~-~~~~~v~~-~~~~~~a~-~ 80 (332)
++++|+||||+|+||++++..|++.++ +|+.+.++.. .......+ .... ....|+.. ..++.+++ .
T Consensus 16 ~~~~ilItGasG~iG~~l~~~L~~~g~-------~V~~~~R~~~--~~~~~~~~--~~~~~~~~~Dl~d~~~~l~~~~~~ 84 (251)
T PLN00141 16 KTKTVFVAGATGRTGKRIVEQLLAKGF-------AVKAGVRDVD--KAKTSLPQ--DPSLQIVRADVTEGSDKLVEAIGD 84 (251)
T ss_pred cCCeEEEECCCcHHHHHHHHHHHhCCC-------EEEEEecCHH--HHHHhccc--CCceEEEEeeCCCCHHHHHHHhhc
Confidence 478999999999999999999998775 7777665431 11111000 0001 11123332 12345566 6
Q ss_pred CCcEEEEecCCCCCCCCChhHHHhhhHHHHHHHHHHHHhhcCCCcEEEEEeC
Q 019990 81 DVNIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEKHAAPNCKVLVVAN 132 (332)
Q Consensus 81 ~aDiVi~~ag~~~~~~~~~~~~~~~N~~~~~~i~~~i~~~~~~~~~viv~sn 132 (332)
++|+||+++|.....+ + ......|......+++++.+.+ . .+++++|.
T Consensus 85 ~~d~vi~~~g~~~~~~-~-~~~~~~n~~~~~~ll~a~~~~~-~-~~iV~iSS 132 (251)
T PLN00141 85 DSDAVICATGFRRSFD-P-FAPWKVDNFGTVNLVEACRKAG-V-TRFILVSS 132 (251)
T ss_pred CCCEEEECCCCCcCCC-C-CCceeeehHHHHHHHHHHHHcC-C-CEEEEEcc
Confidence 8999999887643211 1 1123556667788888888764 2 36666554
|
|
| >PRK08277 D-mannonate oxidoreductase; Provisional | Back alignment and domain information |
|---|
Probab=98.29 E-value=4.7e-06 Score=75.45 Aligned_cols=155 Identities=13% Similarity=0.121 Sum_probs=87.5
Q ss_pred CcEEEEEcCCChhHHHHHHHHHhcccCCCCCCeEEEEEecccchhhhhhhHhhhhhh--cc-CCccceEEeCCHHHH---
Q 019990 5 PLRVLVTGAAGQIGYALVPMIARGIMLGPDQPVILHMLDIEPAAEALNGVKMELIDA--AF-PLLKGVVATTDVVEA--- 78 (332)
Q Consensus 5 ~~kI~VtGaaG~IGs~l~~~L~~~~~~~~~~~~~i~l~D~~~~~~~~~~~~~dl~~~--~~-~~~~~v~~~~~~~~a--- 78 (332)
.++++||||+|+||++++..|++.|. +|+++|++. +.++....++.+. .. .+..|+....++.++
T Consensus 10 ~k~vlVtGas~giG~~ia~~l~~~G~-------~V~~~~r~~--~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~v~~~~~~ 80 (278)
T PRK08277 10 GKVAVITGGGGVLGGAMAKELARAGA-------KVAILDRNQ--EKAEAVVAEIKAAGGEALAVKADVLDKESLEQARQQ 80 (278)
T ss_pred CCEEEEeCCCchHHHHHHHHHHHCCC-------EEEEEeCCH--HHHHHHHHHHHhcCCeEEEEECCCCCHHHHHHHHHH
Confidence 46899999999999999999998886 789999753 2233222233221 00 112333332222222
Q ss_pred ----hCCCcEEEEecCCCCCC------------------CCChh---HHHhhhHHHHH----HHHHHHHhhcCCCcEEEE
Q 019990 79 ----CKDVNIAVMVGGFPRKE------------------GMERK---DVMSKNVSIYK----AQASALEKHAAPNCKVLV 129 (332)
Q Consensus 79 ----~~~aDiVi~~ag~~~~~------------------~~~~~---~~~~~N~~~~~----~i~~~i~~~~~~~~~viv 129 (332)
+...|++||.||..... ..+.. ..+..|+.... .+++.+.+. +.+.+|+
T Consensus 81 ~~~~~g~id~li~~ag~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~--~~g~ii~ 158 (278)
T PRK08277 81 ILEDFGPCDILINGAGGNHPKATTDNEFHELIEPTKTFFDLDEEGFEFVFDLNLLGTLLPTQVFAKDMVGR--KGGNIIN 158 (278)
T ss_pred HHHHcCCCCEEEECCCCCCcccccccccccccccccccccCCHHHHHHHHhhhhHHHHHHHHHHHHHHHhc--CCcEEEE
Confidence 24689999999853210 11111 23455655443 344444443 2356677
Q ss_pred EeCChhhHHHHHHHHCCCCCCCcEEEeecccHHHHHHHHHHHcCCCCCCeee
Q 019990 130 VANPANTNALILKEFAPSIPAKNITCLTRLDHNRAMGQISERLKVHVSDVKN 181 (332)
Q Consensus 130 ~snp~~~~~~~~~~~~~~~~~~~i~~~t~l~~~r~~~~~a~~~~v~~~~v~~ 181 (332)
+|+.... .+.+....|+.+|.....+.+.++..+.- ..+|.
T Consensus 159 isS~~~~---------~~~~~~~~Y~~sK~a~~~l~~~la~e~~~--~girv 199 (278)
T PRK08277 159 ISSMNAF---------TPLTKVPAYSAAKAAISNFTQWLAVHFAK--VGIRV 199 (278)
T ss_pred Eccchhc---------CCCCCCchhHHHHHHHHHHHHHHHHHhCc--cCeEE
Confidence 6653211 12333335777887777787788877653 45653
|
|
| >PRK07819 3-hydroxybutyryl-CoA dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=98.28 E-value=1.6e-05 Score=72.53 Aligned_cols=107 Identities=20% Similarity=0.259 Sum_probs=68.3
Q ss_pred CCCCCcEEEEEcCCChhHHHHHHHHHhcccCCCCCCeEEEEEecccchhhhhhhHhhh----hhhc----c------CCc
Q 019990 1 MAKNPLRVLVTGAAGQIGYALVPMIARGIMLGPDQPVILHMLDIEPAAEALNGVKMEL----IDAA----F------PLL 66 (332)
Q Consensus 1 m~~~~~kI~VtGaaG~IGs~l~~~L~~~~~~~~~~~~~i~l~D~~~~~~~~~~~~~dl----~~~~----~------~~~ 66 (332)
|++++.||+|+| +|.+|+.++..|+..|+ +|+++|.++. .+......+ .... . ...
T Consensus 1 ~~~~~~~V~ViG-aG~mG~~iA~~~a~~G~-------~V~l~d~~~~--~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~ 70 (286)
T PRK07819 1 MSDAIQRVGVVG-AGQMGAGIAEVCARAGV-------DVLVFETTEE--LATAGRNRIEKSLERAVSRGKLTERERDAAL 70 (286)
T ss_pred CCCCccEEEEEc-ccHHHHHHHHHHHhCCC-------EEEEEECCHH--HHHHHHHHHHHHHHHHHhcccCChhhHHHHH
Confidence 777778999999 69999999999998886 8999998752 222111111 1110 0 012
Q ss_pred cceEEeCCHHHHhCCCcEEEEecCCCCCCCCChhHHHhhhHHHHHHHHHHHHhhc-CCCcEEEEEeCCh
Q 019990 67 KGVVATTDVVEACKDVNIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEKHA-APNCKVLVVANPA 134 (332)
Q Consensus 67 ~~v~~~~~~~~a~~~aDiVi~~ag~~~~~~~~~~~~~~~N~~~~~~i~~~i~~~~-~~~~~viv~snp~ 134 (332)
.+++..+++ +++++||+||-+. + .+.+.-+.+...+.+.+ +|++ |++||..
T Consensus 71 ~~l~~~~~~-~~~~~~d~ViEav--~------------E~~~~K~~l~~~l~~~~~~~~~--il~snTS 122 (286)
T PRK07819 71 ARLRFTTDL-GDFADRQLVIEAV--V------------EDEAVKTEIFAELDKVVTDPDA--VLASNTS 122 (286)
T ss_pred hCeEeeCCH-HHhCCCCEEEEec--c------------cCHHHHHHHHHHHHHhhCCCCc--EEEECCC
Confidence 456666777 6789999999763 1 12333455566777775 5665 4455543
|
|
| >PRK06463 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=98.28 E-value=1.1e-05 Score=72.16 Aligned_cols=159 Identities=14% Similarity=0.098 Sum_probs=89.4
Q ss_pred CCcEEEEEcCCChhHHHHHHHHHhcccCCCCCCeEEEEEecccchhhhhhhHhhhhhhcc-CCccceEEeCCHHHHh---
Q 019990 4 NPLRVLVTGAAGQIGYALVPMIARGIMLGPDQPVILHMLDIEPAAEALNGVKMELIDAAF-PLLKGVVATTDVVEAC--- 79 (332)
Q Consensus 4 ~~~kI~VtGaaG~IGs~l~~~L~~~~~~~~~~~~~i~l~D~~~~~~~~~~~~~dl~~~~~-~~~~~v~~~~~~~~a~--- 79 (332)
..++++||||+|.||++++..|.+.|. ++.+.+.+.. +... ++.+... ....|+....++.+++
T Consensus 6 ~~k~~lItGas~gIG~~~a~~l~~~G~-------~v~~~~~~~~-~~~~----~l~~~~~~~~~~Dl~~~~~~~~~~~~~ 73 (255)
T PRK06463 6 KGKVALITGGTRGIGRAIAEAFLREGA-------KVAVLYNSAE-NEAK----ELREKGVFTIKCDVGNRDQVKKSKEVV 73 (255)
T ss_pred CCCEEEEeCCCChHHHHHHHHHHHCCC-------EEEEEeCCcH-HHHH----HHHhCCCeEEEecCCCHHHHHHHHHHH
Confidence 457899999999999999999998875 6777665321 1111 1211111 1122343333333332
Q ss_pred ----CCCcEEEEecCCCCCC---CCChh---HHHhhhHHH----HHHHHHHHHhhcCCCcEEEEEeCChhhHHHHHHHHC
Q 019990 80 ----KDVNIAVMVGGFPRKE---GMERK---DVMSKNVSI----YKAQASALEKHAAPNCKVLVVANPANTNALILKEFA 145 (332)
Q Consensus 80 ----~~aDiVi~~ag~~~~~---~~~~~---~~~~~N~~~----~~~i~~~i~~~~~~~~~viv~snp~~~~~~~~~~~~ 145 (332)
...|+|||.||..... ..+.. ..++.|+.. ++.+++.+++. ....+|++|+.... .
T Consensus 74 ~~~~~~id~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~l~~~~~~--~~g~iv~isS~~~~--------~ 143 (255)
T PRK06463 74 EKEFGRVDVLVNNAGIMYLMPFEEFDEEKYNKMIKINLNGAIYTTYEFLPLLKLS--KNGAIVNIASNAGI--------G 143 (255)
T ss_pred HHHcCCCCEEEECCCcCCCCChhhCCHHHHHHHHhHhhHHHHHHHHHHHHHHHhc--CCcEEEEEcCHHhC--------C
Confidence 3679999999874311 11222 345667666 45555555543 23566666652210 0
Q ss_pred CCCCCCcEEEeecccHHHHHHHHHHHcCCCCCCeeeeEEEec
Q 019990 146 PSIPAKNITCLTRLDHNRAMGQISERLKVHVSDVKNVIIWGN 187 (332)
Q Consensus 146 ~~~~~~~i~~~t~l~~~r~~~~~a~~~~v~~~~v~~~~V~G~ 187 (332)
...+....|+.+|.....+.+.++..+. +..|+. +.+.+
T Consensus 144 ~~~~~~~~Y~asKaa~~~~~~~la~e~~--~~~i~v-~~i~P 182 (255)
T PRK06463 144 TAAEGTTFYAITKAGIIILTRRLAFELG--KYGIRV-NAVAP 182 (255)
T ss_pred CCCCCccHhHHHHHHHHHHHHHHHHHhh--hcCeEE-EEEee
Confidence 1112223578888877788888877654 455664 33444
|
|
| >PRK06550 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=98.28 E-value=4.8e-06 Score=73.30 Aligned_cols=156 Identities=13% Similarity=0.043 Sum_probs=89.6
Q ss_pred CCCCCcEEEEEcCCChhHHHHHHHHHhcccCCCCCCeEEEEEecccchhhhhhhHhhhhhhccCCccceEEe-CCHHHHh
Q 019990 1 MAKNPLRVLVTGAAGQIGYALVPMIARGIMLGPDQPVILHMLDIEPAAEALNGVKMELIDAAFPLLKGVVAT-TDVVEAC 79 (332)
Q Consensus 1 m~~~~~kI~VtGaaG~IGs~l~~~L~~~~~~~~~~~~~i~l~D~~~~~~~~~~~~~dl~~~~~~~~~~v~~~-~~~~~a~ 79 (332)
|..+.++++||||+|+||++++..|++.|. ++++++++... ... ... .....|+... ....+.+
T Consensus 1 ~~l~~k~~lVtGas~~iG~~ia~~l~~~G~-------~v~~~~r~~~~-~~~------~~~-~~~~~D~~~~~~~~~~~~ 65 (235)
T PRK06550 1 QEFMTKTVLITGAASGIGLAQARAFLAQGA-------QVYGVDKQDKP-DLS------GNF-HFLQLDLSDDLEPLFDWV 65 (235)
T ss_pred CCCCCCEEEEcCCCchHHHHHHHHHHHCCC-------EEEEEeCCccc-ccC------CcE-EEEECChHHHHHHHHHhh
Confidence 666667899999999999999999998875 78888875321 100 000 0011122211 1222334
Q ss_pred CCCcEEEEecCCCC--CC--CCCh---hHHHhhhHHHHHHHHHHHHhhc--CCCcEEEEEeCChhhHHHHHHHHCCCCCC
Q 019990 80 KDVNIAVMVGGFPR--KE--GMER---KDVMSKNVSIYKAQASALEKHA--APNCKVLVVANPANTNALILKEFAPSIPA 150 (332)
Q Consensus 80 ~~aDiVi~~ag~~~--~~--~~~~---~~~~~~N~~~~~~i~~~i~~~~--~~~~~viv~snp~~~~~~~~~~~~~~~~~ 150 (332)
...|+||+.||... .+ ..+. ...+..|+.....+.+.+.... .+..+++++|+.... .+.+.
T Consensus 66 ~~id~lv~~ag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~iv~~sS~~~~---------~~~~~ 136 (235)
T PRK06550 66 PSVDILCNTAGILDDYKPLLDTSLEEWQHIFDTNLTSTFLLTRAYLPQMLERKSGIIINMCSIASF---------VAGGG 136 (235)
T ss_pred CCCCEEEECCCCCCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCcEEEEEcChhhc---------cCCCC
Confidence 57899999998632 11 1222 2346677776666666554321 123466666643211 11222
Q ss_pred CcEEEeecccHHHHHHHHHHHcCCCCCCeeee
Q 019990 151 KNITCLTRLDHNRAMGQISERLKVHVSDVKNV 182 (332)
Q Consensus 151 ~~i~~~t~l~~~r~~~~~a~~~~v~~~~v~~~ 182 (332)
...|+.++.....+...+++.+. +..++..
T Consensus 137 ~~~Y~~sK~a~~~~~~~la~~~~--~~gi~v~ 166 (235)
T PRK06550 137 GAAYTASKHALAGFTKQLALDYA--KDGIQVF 166 (235)
T ss_pred CcccHHHHHHHHHHHHHHHHHhh--hcCeEEE
Confidence 33577788777777777887764 3456643
|
|
| >PRK05884 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=98.28 E-value=1.2e-05 Score=70.49 Aligned_cols=150 Identities=12% Similarity=0.103 Sum_probs=86.3
Q ss_pred cEEEEEcCCChhHHHHHHHHHhcccCCCCCCeEEEEEecccchhhhhhhHhhhhhhccCCccceEEeCCHHHHhC----C
Q 019990 6 LRVLVTGAAGQIGYALVPMIARGIMLGPDQPVILHMLDIEPAAEALNGVKMELIDAAFPLLKGVVATTDVVEACK----D 81 (332)
Q Consensus 6 ~kI~VtGaaG~IGs~l~~~L~~~~~~~~~~~~~i~l~D~~~~~~~~~~~~~dl~~~~~~~~~~v~~~~~~~~a~~----~ 81 (332)
||++||||+|.||++++..|.+.+. ++++++++. +.+.....++. . .....|+....++.++++ .
T Consensus 1 m~vlItGas~giG~~ia~~l~~~g~-------~v~~~~r~~--~~~~~~~~~~~-~-~~~~~D~~~~~~v~~~~~~~~~~ 69 (223)
T PRK05884 1 VEVLVTGGDTDLGRTIAEGFRNDGH-------KVTLVGARR--DDLEVAAKELD-V-DAIVCDNTDPASLEEARGLFPHH 69 (223)
T ss_pred CeEEEEeCCchHHHHHHHHHHHCCC-------EEEEEeCCH--HHHHHHHHhcc-C-cEEecCCCCHHHHHHHHHHHhhc
Confidence 3799999999999999999998875 788888753 22322222211 0 011234444334443332 5
Q ss_pred CcEEEEecCCCCC---C-----CCCh---hHHHhhhHHHHHHHHHHHHhhcCCCcEEEEEeCChhhHHHHHHHHCCCCCC
Q 019990 82 VNIAVMVGGFPRK---E-----GMER---KDVMSKNVSIYKAQASALEKHAAPNCKVLVVANPANTNALILKEFAPSIPA 150 (332)
Q Consensus 82 aDiVi~~ag~~~~---~-----~~~~---~~~~~~N~~~~~~i~~~i~~~~~~~~~viv~snp~~~~~~~~~~~~~~~~~ 150 (332)
.|++|+.+|.... + ..+. ...++.|+...-.+.+++...-...+.++++++.. .+.
T Consensus 70 id~lv~~ag~~~~~~~~~~~~~~~~~~~~~~~~~~N~~~~~~~~~~~~~~~~~~g~Iv~isS~~-------------~~~ 136 (223)
T PRK05884 70 LDTIVNVPAPSWDAGDPRTYSLADTANAWRNALDATVLSAVLTVQSVGDHLRSGGSIISVVPEN-------------PPA 136 (223)
T ss_pred CcEEEECCCccccCCCCcccchhcCHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCeEEEEecCC-------------CCC
Confidence 7999999874210 0 0111 23456676555555555544321235666666421 112
Q ss_pred CcEEEeecccHHHHHHHHHHHcCCCCCCeee
Q 019990 151 KNITCLTRLDHNRAMGQISERLKVHVSDVKN 181 (332)
Q Consensus 151 ~~i~~~t~l~~~r~~~~~a~~~~v~~~~v~~ 181 (332)
...|+.+|-.-..+.+.+++.+. +..||.
T Consensus 137 ~~~Y~asKaal~~~~~~la~e~~--~~gI~v 165 (223)
T PRK05884 137 GSAEAAIKAALSNWTAGQAAVFG--TRGITI 165 (223)
T ss_pred ccccHHHHHHHHHHHHHHHHHhh--hcCeEE
Confidence 23577788877788888887765 345653
|
|
| >PF02737 3HCDH_N: 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain; InterPro: IPR006176 3-hydroxyacyl-CoA dehydrogenase (1 | Back alignment and domain information |
|---|
Probab=98.27 E-value=8.2e-06 Score=69.27 Aligned_cols=101 Identities=23% Similarity=0.361 Sum_probs=64.6
Q ss_pred EEEEEcCCChhHHHHHHHHHhcccCCCCCCeEEEEEecccchhhhhh---hHhh-hhhh----cc------CCccceEEe
Q 019990 7 RVLVTGAAGQIGYALVPMIARGIMLGPDQPVILHMLDIEPAAEALNG---VKME-LIDA----AF------PLLKGVVAT 72 (332)
Q Consensus 7 kI~VtGaaG~IGs~l~~~L~~~~~~~~~~~~~i~l~D~~~~~~~~~~---~~~d-l~~~----~~------~~~~~v~~~ 72 (332)
||+|+| +|.+|+.++..++..|+ +|+++|.+.. .+.. ...+ +... .. .....++..
T Consensus 1 ~V~ViG-aG~mG~~iA~~~a~~G~-------~V~l~d~~~~--~l~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~i~~~ 70 (180)
T PF02737_consen 1 KVAVIG-AGTMGRGIAALFARAGY-------EVTLYDRSPE--ALERARKRIERLLDRLVRKGRLSQEEADAALARISFT 70 (180)
T ss_dssp EEEEES--SHHHHHHHHHHHHTTS-------EEEEE-SSHH--HHHHHHHHHHHHHHHHHHTTTTTHHHHHHHHHTEEEE
T ss_pred CEEEEc-CCHHHHHHHHHHHhCCC-------cEEEEECChH--HHHhhhhHHHHHHhhhhhhccchhhhhhhhhhhcccc
Confidence 699999 69999999999999886 9999998652 2221 1111 1111 00 013577878
Q ss_pred CCHHHHhCCCcEEEEecCCCCCCCCChhHHHhhhHHHHHHHHHHHHhhcCCCcEEEEEeCCh
Q 019990 73 TDVVEACKDVNIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEKHAAPNCKVLVVANPA 134 (332)
Q Consensus 73 ~~~~~a~~~aDiVi~~ag~~~~~~~~~~~~~~~N~~~~~~i~~~i~~~~~~~~~viv~snp~ 134 (332)
+++.++. +||+||-+. ..+.+.-+++...+.+.++|++ +++||..
T Consensus 71 ~dl~~~~-~adlViEai--------------~E~l~~K~~~~~~l~~~~~~~~--ilasnTS 115 (180)
T PF02737_consen 71 TDLEEAV-DADLVIEAI--------------PEDLELKQELFAELDEICPPDT--ILASNTS 115 (180)
T ss_dssp SSGGGGC-TESEEEE-S---------------SSHHHHHHHHHHHHCCS-TTS--EEEE--S
T ss_pred cCHHHHh-hhheehhhc--------------cccHHHHHHHHHHHHHHhCCCc--eEEecCC
Confidence 8887655 999999753 1135556788889999886776 5567643
|
1.1.35 from EC) (HCDH) [] is an enzyme involved in fatty acid metabolism, it catalyzes the reduction of 3-hydroxyacyl-CoA to 3-oxoacyl-CoA. Most eukaryotic cells have 2 fatty-acid beta-oxidation systems, one located in mitochondria and the other in peroxisomes. In peroxisomes 3-hydroxyacyl-CoA dehydrogenase forms, with enoyl-CoA hydratase (ECH) and 3,2-trans-enoyl-CoA isomerase (ECI) a multifunctional enzyme where the N-terminal domain bears the hydratase/isomerase activities and the C-terminal domain the dehydrogenase activity. There are two mitochondrial enzymes: one which is monofunctional and the other which is, like its peroxisomal counterpart, multifunctional. In Escherichia coli (gene fadB) and Pseudomonas fragi (gene faoA) HCDH is part of a multifunctional enzyme which also contains an ECH/ECI domain as well as a 3-hydroxybutyryl-CoA epimerase domain []. There are two major regions of similarity in the sequences of proteins of the HCDH family, the first one located in the N-terminal, corresponds to the NAD-binding site, the second one is located in the centre of the sequence. This represents the C-terminal domain which is also found in lambda crystallin. Some proteins include two copies of this domain.; GO: 0003857 3-hydroxyacyl-CoA dehydrogenase activity, 0016491 oxidoreductase activity, 0006631 fatty acid metabolic process, 0055114 oxidation-reduction process; PDB: 3K6J_A 1ZCJ_A 2X58_A 1ZEJ_A 3HDH_B 2WTB_A 1WDL_B 2D3T_B 1WDK_A 1WDM_B .... |
| >PRK08589 short chain dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=98.27 E-value=9.6e-06 Score=73.34 Aligned_cols=154 Identities=10% Similarity=0.041 Sum_probs=88.3
Q ss_pred CCcEEEEEcCCChhHHHHHHHHHhcccCCCCCCeEEEEEecccchhhhhhhHhhhhhhc--c-CCccceEEeCCHHHH--
Q 019990 4 NPLRVLVTGAAGQIGYALVPMIARGIMLGPDQPVILHMLDIEPAAEALNGVKMELIDAA--F-PLLKGVVATTDVVEA-- 78 (332)
Q Consensus 4 ~~~kI~VtGaaG~IGs~l~~~L~~~~~~~~~~~~~i~l~D~~~~~~~~~~~~~dl~~~~--~-~~~~~v~~~~~~~~a-- 78 (332)
+.++++||||+|.||.+++..|++.|. +|++++++. .+.....++.+.. . ....|+....++.++
T Consensus 5 ~~k~vlItGas~gIG~aia~~l~~~G~-------~vi~~~r~~---~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~ 74 (272)
T PRK08589 5 ENKVAVITGASTGIGQASAIALAQEGA-------YVLAVDIAE---AVSETVDKIKSNGGKAKAYHVDISDEQQVKDFAS 74 (272)
T ss_pred CCCEEEEECCCchHHHHHHHHHHHCCC-------EEEEEeCcH---HHHHHHHHHHhcCCeEEEEEeecCCHHHHHHHHH
Confidence 457899999999999999999999885 889998752 2333333332211 1 112334333233222
Q ss_pred -----hCCCcEEEEecCCCCCC----CCChh---HHHhhhHHHHH----HHHHHHHhhcCCCcEEEEEeCChhhHHHHHH
Q 019990 79 -----CKDVNIAVMVGGFPRKE----GMERK---DVMSKNVSIYK----AQASALEKHAAPNCKVLVVANPANTNALILK 142 (332)
Q Consensus 79 -----~~~aDiVi~~ag~~~~~----~~~~~---~~~~~N~~~~~----~i~~~i~~~~~~~~~viv~snp~~~~~~~~~ 142 (332)
+...|++|+.||..... ..+.. ..+..|+.... .+.+.+.+. +++++++|+....
T Consensus 75 ~~~~~~g~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~---~g~iv~isS~~~~------ 145 (272)
T PRK08589 75 EIKEQFGRVDVLFNNAGVDNAAGRIHEYPVDVFDKIMAVDMRGTFLMTKMLLPLMMEQ---GGSIINTSSFSGQ------ 145 (272)
T ss_pred HHHHHcCCcCEEEECCCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHc---CCEEEEeCchhhc------
Confidence 23579999999874321 12222 23445655443 334444332 2567777653221
Q ss_pred HHCCCCCCCcEEEeecccHHHHHHHHHHHcCCCCCCeee
Q 019990 143 EFAPSIPAKNITCLTRLDHNRAMGQISERLKVHVSDVKN 181 (332)
Q Consensus 143 ~~~~~~~~~~i~~~t~l~~~r~~~~~a~~~~v~~~~v~~ 181 (332)
.+.+....|+.+|.....+.+.+++.++ +..|+.
T Consensus 146 ---~~~~~~~~Y~asKaal~~l~~~la~e~~--~~gI~v 179 (272)
T PRK08589 146 ---AADLYRSGYNAAKGAVINFTKSIAIEYG--RDGIRA 179 (272)
T ss_pred ---CCCCCCchHHHHHHHHHHHHHHHHHHhh--hcCeEE
Confidence 1122223567788777888888888764 455664
|
|
| >PRK06171 sorbitol-6-phosphate 2-dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=98.27 E-value=5.6e-06 Score=74.41 Aligned_cols=153 Identities=12% Similarity=0.086 Sum_probs=88.2
Q ss_pred CCCcEEEEEcCCChhHHHHHHHHHhcccCCCCCCeEEEEEecccchhhhhhhHhhhhhhccCCccceEEeCCHHHH----
Q 019990 3 KNPLRVLVTGAAGQIGYALVPMIARGIMLGPDQPVILHMLDIEPAAEALNGVKMELIDAAFPLLKGVVATTDVVEA---- 78 (332)
Q Consensus 3 ~~~~kI~VtGaaG~IGs~l~~~L~~~~~~~~~~~~~i~l~D~~~~~~~~~~~~~dl~~~~~~~~~~v~~~~~~~~a---- 78 (332)
.+.++++||||+|+||.+++..|++.|. ++++.|++.. ..... .. .....|+....++.+.
T Consensus 7 l~~k~vlItG~s~gIG~~la~~l~~~G~-------~v~~~~~~~~--~~~~~-----~~-~~~~~D~~~~~~~~~~~~~~ 71 (266)
T PRK06171 7 LQGKIIIVTGGSSGIGLAIVKELLANGA-------NVVNADIHGG--DGQHE-----NY-QFVPTDVSSAEEVNHTVAEI 71 (266)
T ss_pred CCCCEEEEeCCCChHHHHHHHHHHHCCC-------EEEEEeCCcc--ccccC-----ce-EEEEccCCCHHHHHHHHHHH
Confidence 3457899999999999999999998885 7888887542 11110 00 0011233332233222
Q ss_pred ---hCCCcEEEEecCCCCCC------------CCChh---HHHhhhHHHHHHHHHHHHhhc--CCCcEEEEEeCChhhHH
Q 019990 79 ---CKDVNIAVMVGGFPRKE------------GMERK---DVMSKNVSIYKAQASALEKHA--APNCKVLVVANPANTNA 138 (332)
Q Consensus 79 ---~~~aDiVi~~ag~~~~~------------~~~~~---~~~~~N~~~~~~i~~~i~~~~--~~~~~viv~snp~~~~~ 138 (332)
+...|++||+||..... ..+.+ ..+..|+.....+.+++..+- .....+|++|+....
T Consensus 72 ~~~~g~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~g~iv~isS~~~~-- 149 (266)
T PRK06171 72 IEKFGRIDGLVNNAGINIPRLLVDEKDPAGKYELNEAAFDKMFNINQKGVFLMSQAVARQMVKQHDGVIVNMSSEAGL-- 149 (266)
T ss_pred HHHcCCCCEEEECCcccCCccccccccccccccCCHHHHHHHHhhhchhHHHHHHHHHHHHHhcCCcEEEEEcccccc--
Confidence 23579999999863210 11222 245677777666666665432 123456666653221
Q ss_pred HHHHHHCCCCCCCcEEEeecccHHHHHHHHHHHcCCCCCCeee
Q 019990 139 LILKEFAPSIPAKNITCLTRLDHNRAMGQISERLKVHVSDVKN 181 (332)
Q Consensus 139 ~~~~~~~~~~~~~~i~~~t~l~~~r~~~~~a~~~~v~~~~v~~ 181 (332)
.+.+....|+.+|.....+.+.+++.+. +..|+.
T Consensus 150 -------~~~~~~~~Y~~sK~a~~~l~~~la~e~~--~~gi~v 183 (266)
T PRK06171 150 -------EGSEGQSCYAATKAALNSFTRSWAKELG--KHNIRV 183 (266)
T ss_pred -------CCCCCCchhHHHHHHHHHHHHHHHHHhh--hcCeEE
Confidence 1122233567777776777777777764 455664
|
|
| >PRK09291 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=98.26 E-value=8.6e-06 Score=72.66 Aligned_cols=147 Identities=14% Similarity=0.145 Sum_probs=80.7
Q ss_pred cEEEEEcCCChhHHHHHHHHHhcccCCCCCCeEEEEEecccchhhhhhhHhhhhhhcc---CCccceEEeCCHHHHhC-C
Q 019990 6 LRVLVTGAAGQIGYALVPMIARGIMLGPDQPVILHMLDIEPAAEALNGVKMELIDAAF---PLLKGVVATTDVVEACK-D 81 (332)
Q Consensus 6 ~kI~VtGaaG~IGs~l~~~L~~~~~~~~~~~~~i~l~D~~~~~~~~~~~~~dl~~~~~---~~~~~v~~~~~~~~a~~-~ 81 (332)
++|+||||+|+||++++..|++.|. ++++.+++.. .+.....+...... ....|+....++.+++. +
T Consensus 3 ~~vlVtGasg~iG~~ia~~l~~~G~-------~v~~~~r~~~--~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~ 73 (257)
T PRK09291 3 KTILITGAGSGFGREVALRLARKGH-------NVIAGVQIAP--QVTALRAEAARRGLALRVEKLDLTDAIDRAQAAEWD 73 (257)
T ss_pred CEEEEeCCCCHHHHHHHHHHHHCCC-------EEEEEeCCHH--HHHHHHHHHHhcCCcceEEEeeCCCHHHHHHHhcCC
Confidence 5799999999999999999998875 7787776431 12111111111100 01124433334455554 7
Q ss_pred CcEEEEecCCCCCC---CCChh---HHHhhhHHHH----HHHHHHHHhhcCCCcEEEEEeCChhhHHHHHHHHCCCCCCC
Q 019990 82 VNIAVMVGGFPRKE---GMERK---DVMSKNVSIY----KAQASALEKHAAPNCKVLVVANPANTNALILKEFAPSIPAK 151 (332)
Q Consensus 82 aDiVi~~ag~~~~~---~~~~~---~~~~~N~~~~----~~i~~~i~~~~~~~~~viv~snp~~~~~~~~~~~~~~~~~~ 151 (332)
.|+|||.||..... ..+.+ ..+..|+... +.+++.+.+.. ..++|++|+-... .+.+..
T Consensus 74 id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~--~~~iv~~SS~~~~---------~~~~~~ 142 (257)
T PRK09291 74 VDVLLNNAGIGEAGAVVDIPVELVRELFETNVFGPLELTQGFVRKMVARG--KGKVVFTSSMAGL---------ITGPFT 142 (257)
T ss_pred CCEEEECCCcCCCcCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcC--CceEEEEcChhhc---------cCCCCc
Confidence 99999999864321 11222 2344565543 33444444443 2466766652211 112223
Q ss_pred cEEEeecccHHHHHHHHHHHc
Q 019990 152 NITCLTRLDHNRAMGQISERL 172 (332)
Q Consensus 152 ~i~~~t~l~~~r~~~~~a~~~ 172 (332)
..|+.++...+++...+++.+
T Consensus 143 ~~Y~~sK~a~~~~~~~l~~~~ 163 (257)
T PRK09291 143 GAYCASKHALEAIAEAMHAEL 163 (257)
T ss_pred chhHHHHHHHHHHHHHHHHHH
Confidence 356677777777766666553
|
|
| >PRK05650 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=98.26 E-value=6.7e-06 Score=74.17 Aligned_cols=154 Identities=16% Similarity=0.095 Sum_probs=83.1
Q ss_pred cEEEEEcCCChhHHHHHHHHHhcccCCCCCCeEEEEEecccchhhhhhhHhhhhhhc--c-CCccceEEeCCHHHHh---
Q 019990 6 LRVLVTGAAGQIGYALVPMIARGIMLGPDQPVILHMLDIEPAAEALNGVKMELIDAA--F-PLLKGVVATTDVVEAC--- 79 (332)
Q Consensus 6 ~kI~VtGaaG~IGs~l~~~L~~~~~~~~~~~~~i~l~D~~~~~~~~~~~~~dl~~~~--~-~~~~~v~~~~~~~~a~--- 79 (332)
++|+||||+|+||++++..|++.|. +|.+.+++. +.++....++.... . ....|+....++.+.+
T Consensus 1 ~~vlVtGasggIG~~la~~l~~~g~-------~V~~~~r~~--~~~~~~~~~l~~~~~~~~~~~~D~~~~~~~~~~~~~i 71 (270)
T PRK05650 1 NRVMITGAASGLGRAIALRWAREGW-------RLALADVNE--EGGEETLKLLREAGGDGFYQRCDVRDYSQLTALAQAC 71 (270)
T ss_pred CEEEEecCCChHHHHHHHHHHHCCC-------EEEEEeCCH--HHHHHHHHHHHhcCCceEEEEccCCCHHHHHHHHHHH
Confidence 4799999999999999999998875 788888753 23333323332211 0 1112333322333322
Q ss_pred ----CCCcEEEEecCCCCCC---CCChh---HHHhhhHHHHHH----HHHHHHhhcCCCcEEEEEeCChhhHHHHHHHHC
Q 019990 80 ----KDVNIAVMVGGFPRKE---GMERK---DVMSKNVSIYKA----QASALEKHAAPNCKVLVVANPANTNALILKEFA 145 (332)
Q Consensus 80 ----~~aDiVi~~ag~~~~~---~~~~~---~~~~~N~~~~~~----i~~~i~~~~~~~~~viv~snp~~~~~~~~~~~~ 145 (332)
...|+|||.||..... ..+.. ..+..|...... +.+.+++.. ..+++++|+....
T Consensus 72 ~~~~~~id~lI~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~--~~~iv~vsS~~~~--------- 140 (270)
T PRK05650 72 EEKWGGIDVIVNNAGVASGGFFEELSLEDWDWQIAINLMGVVKGCKAFLPLFKRQK--SGRIVNIASMAGL--------- 140 (270)
T ss_pred HHHcCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHccHHHHHHHHHHHHHHHhCC--CCEEEEECChhhc---------
Confidence 3689999999864321 12222 245667544444 444455442 3466666653211
Q ss_pred CCCCCCcEEEeecccHHHHHHHHHHHcCCCCCCeee
Q 019990 146 PSIPAKNITCLTRLDHNRAMGQISERLKVHVSDVKN 181 (332)
Q Consensus 146 ~~~~~~~i~~~t~l~~~r~~~~~a~~~~v~~~~v~~ 181 (332)
.+.+....|+.++....-+...++..+. +..++.
T Consensus 141 ~~~~~~~~Y~~sKaa~~~~~~~l~~e~~--~~gi~v 174 (270)
T PRK05650 141 MQGPAMSSYNVAKAGVVALSETLLVELA--DDEIGV 174 (270)
T ss_pred CCCCCchHHHHHHHHHHHHHHHHHHHhc--ccCcEE
Confidence 1222223456666655555556666543 344553
|
|
| >PRK08945 putative oxoacyl-(acyl carrier protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=98.25 E-value=3.5e-05 Score=68.38 Aligned_cols=163 Identities=17% Similarity=0.178 Sum_probs=91.0
Q ss_pred CCcEEEEEcCCChhHHHHHHHHHhcccCCCCCCeEEEEEecccchhhhhhhHhhhhhhccC----CccceEE--eCC---
Q 019990 4 NPLRVLVTGAAGQIGYALVPMIARGIMLGPDQPVILHMLDIEPAAEALNGVKMELIDAAFP----LLKGVVA--TTD--- 74 (332)
Q Consensus 4 ~~~kI~VtGaaG~IGs~l~~~L~~~~~~~~~~~~~i~l~D~~~~~~~~~~~~~dl~~~~~~----~~~~v~~--~~~--- 74 (332)
+.++|+||||+|+||.+++..|++.|. +|+++|++. +.+.....++.+.... ...++.. ..+
T Consensus 11 ~~k~vlItG~~g~iG~~la~~l~~~G~-------~Vi~~~r~~--~~~~~~~~~l~~~~~~~~~~~~~d~~~~~~~~~~~ 81 (247)
T PRK08945 11 KDRIILVTGAGDGIGREAALTYARHGA-------TVILLGRTE--EKLEAVYDEIEAAGGPQPAIIPLDLLTATPQNYQQ 81 (247)
T ss_pred CCCEEEEeCCCchHHHHHHHHHHHCCC-------cEEEEeCCH--HHHHHHHHHHHhcCCCCceEEEecccCCCHHHHHH
Confidence 357899999999999999999998775 789999864 2233333334322110 0112221 111
Q ss_pred ----HHHHhCCCcEEEEecCCCCC--C--CCCh---hHHHhhhHHHHHHHHHHHHhhc--CCCcEEEEEeCChhhHHHHH
Q 019990 75 ----VVEACKDVNIAVMVGGFPRK--E--GMER---KDVMSKNVSIYKAQASALEKHA--APNCKVLVVANPANTNALIL 141 (332)
Q Consensus 75 ----~~~a~~~aDiVi~~ag~~~~--~--~~~~---~~~~~~N~~~~~~i~~~i~~~~--~~~~~viv~snp~~~~~~~~ 141 (332)
+.+.+...|+|||.||.... + ..+. ...++.|+.....+.+.+..+. .+...+++.|+....
T Consensus 82 ~~~~~~~~~~~id~vi~~Ag~~~~~~~~~~~~~~~~~~~~~~n~~g~~~~~~~~~~~l~~~~~~~iv~~ss~~~~----- 156 (247)
T PRK08945 82 LADTIEEQFGRLDGVLHNAGLLGELGPMEQQDPEVWQDVMQVNVNATFMLTQALLPLLLKSPAASLVFTSSSVGR----- 156 (247)
T ss_pred HHHHHHHHhCCCCEEEECCcccCCCCCcccCCHHHHHHHHHHccHHHHHHHHHHHHHHHhCCCCEEEEEccHhhc-----
Confidence 22223468999999986321 1 1222 2346677776555555553221 123466666653211
Q ss_pred HHHCCCCCCCcEEEeecccHHHHHHHHHHHcCCCCCCeeeeEEEec
Q 019990 142 KEFAPSIPAKNITCLTRLDHNRAMGQISERLKVHVSDVKNVIIWGN 187 (332)
Q Consensus 142 ~~~~~~~~~~~i~~~t~l~~~r~~~~~a~~~~v~~~~v~~~~V~G~ 187 (332)
.+.+....|+.++.....+...+++.+. ...++. +++.+
T Consensus 157 ----~~~~~~~~Y~~sK~a~~~~~~~~~~~~~--~~~i~~-~~v~p 195 (247)
T PRK08945 157 ----QGRANWGAYAVSKFATEGMMQVLADEYQ--GTNLRV-NCINP 195 (247)
T ss_pred ----CCCCCCcccHHHHHHHHHHHHHHHHHhc--ccCEEE-EEEec
Confidence 1223333577778777777777777654 345663 33444
|
|
| >PRK09186 flagellin modification protein A; Provisional | Back alignment and domain information |
|---|
Probab=98.25 E-value=1.1e-05 Score=72.01 Aligned_cols=169 Identities=17% Similarity=0.119 Sum_probs=89.9
Q ss_pred CCcEEEEEcCCChhHHHHHHHHHhcccCCCCCCeEEEEEecccchhhhhhhHhhhhhh----cc-CCccceEEeCCHHHH
Q 019990 4 NPLRVLVTGAAGQIGYALVPMIARGIMLGPDQPVILHMLDIEPAAEALNGVKMELIDA----AF-PLLKGVVATTDVVEA 78 (332)
Q Consensus 4 ~~~kI~VtGaaG~IGs~l~~~L~~~~~~~~~~~~~i~l~D~~~~~~~~~~~~~dl~~~----~~-~~~~~v~~~~~~~~a 78 (332)
+.++|+||||+|+||++++..|++.|. ++++.+++. +.+.....++... .. ....|+....++.++
T Consensus 3 ~~k~vlItGas~giG~~~a~~l~~~g~-------~v~~~~r~~--~~~~~~~~~l~~~~~~~~~~~~~~Dl~d~~~~~~~ 73 (256)
T PRK09186 3 KGKTILITGAGGLIGSALVKAILEAGG-------IVIAADIDK--EALNELLESLGKEFKSKKLSLVELDITDQESLEEF 73 (256)
T ss_pred CCCEEEEECCCchHHHHHHHHHHHCCC-------EEEEEecCh--HHHHHHHHHHHhhcCCCceeEEEecCCCHHHHHHH
Confidence 457899999999999999999998875 788888753 2333222333110 01 112344444344443
Q ss_pred hC-------CCcEEEEecCCCCC------CCCChh---HHHhhhHHH----HHHHHHHHHhhcCCCcEEEEEeCChhhHH
Q 019990 79 CK-------DVNIAVMVGGFPRK------EGMERK---DVMSKNVSI----YKAQASALEKHAAPNCKVLVVANPANTNA 138 (332)
Q Consensus 79 ~~-------~aDiVi~~ag~~~~------~~~~~~---~~~~~N~~~----~~~i~~~i~~~~~~~~~viv~snp~~~~~ 138 (332)
++ ..|+|||.|+.... .+.+.. ..+..|+.. ++.+++.+++.+ ..+++++|+-.....
T Consensus 74 ~~~~~~~~~~id~vi~~A~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~--~~~iv~~sS~~~~~~ 151 (256)
T PRK09186 74 LSKSAEKYGKIDGAVNCAYPRNKDYGKKFFDVSLDDFNENLSLHLGSSFLFSQQFAKYFKKQG--GGNLVNISSIYGVVA 151 (256)
T ss_pred HHHHHHHcCCccEEEECCccccccccCccccCCHHHHHHHHHHhhhhHHHHHHHHHHHHHhcC--CceEEEEechhhhcc
Confidence 33 37999999964311 112211 234445533 345555555442 346666664221111
Q ss_pred HHHHHHCCCCCCC--cEEEeecccHHHHHHHHHHHcCCCCCCeeeeEEEec
Q 019990 139 LILKEFAPSIPAK--NITCLTRLDHNRAMGQISERLKVHVSDVKNVIIWGN 187 (332)
Q Consensus 139 ~~~~~~~~~~~~~--~i~~~t~l~~~r~~~~~a~~~~v~~~~v~~~~V~G~ 187 (332)
+-.... .+.+.. ..|+.+|.....+...+++.+. +..++. +++.+
T Consensus 152 ~~~~~~-~~~~~~~~~~Y~~sK~a~~~l~~~la~e~~--~~~i~v-~~i~P 198 (256)
T PRK09186 152 PKFEIY-EGTSMTSPVEYAAIKAGIIHLTKYLAKYFK--DSNIRV-NCVSP 198 (256)
T ss_pred ccchhc-cccccCCcchhHHHHHHHHHHHHHHHHHhC--cCCeEE-EEEec
Confidence 000000 111111 2477788777777777777653 445663 34454
|
|
| >PRK05693 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=98.23 E-value=4e-06 Score=75.82 Aligned_cols=145 Identities=14% Similarity=0.127 Sum_probs=78.9
Q ss_pred CcEEEEEcCCChhHHHHHHHHHhcccCCCCCCeEEEEEecccchhhhhhhHhhhhhhcc-CCccceEEeCCHHHH-----
Q 019990 5 PLRVLVTGAAGQIGYALVPMIARGIMLGPDQPVILHMLDIEPAAEALNGVKMELIDAAF-PLLKGVVATTDVVEA----- 78 (332)
Q Consensus 5 ~~kI~VtGaaG~IGs~l~~~L~~~~~~~~~~~~~i~l~D~~~~~~~~~~~~~dl~~~~~-~~~~~v~~~~~~~~a----- 78 (332)
|++++||||+|+||++++..|++.|. +|++.+++. +.+. ++..... ....|+....++.+.
T Consensus 1 mk~vlItGasggiG~~la~~l~~~G~-------~V~~~~r~~--~~~~----~~~~~~~~~~~~Dl~~~~~~~~~~~~~~ 67 (274)
T PRK05693 1 MPVVLITGCSSGIGRALADAFKAAGY-------EVWATARKA--EDVE----ALAAAGFTAVQLDVNDGAALARLAEELE 67 (274)
T ss_pred CCEEEEecCCChHHHHHHHHHHHCCC-------EEEEEeCCH--HHHH----HHHHCCCeEEEeeCCCHHHHHHHHHHHH
Confidence 35799999999999999999998875 888888753 1221 1111111 111233322222222
Q ss_pred --hCCCcEEEEecCCCCC-C--CCCh---hHHHhhhHHHHHHHHHHHHhhcC-CCcEEEEEeCChhhHHHHHHHHCCCCC
Q 019990 79 --CKDVNIAVMVGGFPRK-E--GMER---KDVMSKNVSIYKAQASALEKHAA-PNCKVLVVANPANTNALILKEFAPSIP 149 (332)
Q Consensus 79 --~~~aDiVi~~ag~~~~-~--~~~~---~~~~~~N~~~~~~i~~~i~~~~~-~~~~viv~snp~~~~~~~~~~~~~~~~ 149 (332)
..+.|+|||.||.... + ..+. ...++.|+.....+.+.+..+.. ....++++++.... .+.+
T Consensus 68 ~~~~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~g~iv~isS~~~~---------~~~~ 138 (274)
T PRK05693 68 AEHGGLDVLINNAGYGAMGPLLDGGVEAMRRQFETNVFAVVGVTRALFPLLRRSRGLVVNIGSVSGV---------LVTP 138 (274)
T ss_pred HhcCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHhhcCCEEEEECCcccc---------CCCC
Confidence 2468999999986321 1 1122 23456677666555555433210 12456666653221 1122
Q ss_pred CCcEEEeecccHHHHHHHHHHH
Q 019990 150 AKNITCLTRLDHNRAMGQISER 171 (332)
Q Consensus 150 ~~~i~~~t~l~~~r~~~~~a~~ 171 (332)
....|+.++.....+...++..
T Consensus 139 ~~~~Y~~sK~al~~~~~~l~~e 160 (274)
T PRK05693 139 FAGAYCASKAAVHALSDALRLE 160 (274)
T ss_pred CccHHHHHHHHHHHHHHHHHHH
Confidence 2234566666666665556555
|
|
| >PRK08177 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=98.23 E-value=1e-05 Score=70.87 Aligned_cols=158 Identities=10% Similarity=0.041 Sum_probs=85.9
Q ss_pred CcEEEEEcCCChhHHHHHHHHHhcccCCCCCCeEEEEEecccchhhhhhhHhhhhhhccCCccceEEeCCHHHHhC----
Q 019990 5 PLRVLVTGAAGQIGYALVPMIARGIMLGPDQPVILHMLDIEPAAEALNGVKMELIDAAFPLLKGVVATTDVVEACK---- 80 (332)
Q Consensus 5 ~~kI~VtGaaG~IGs~l~~~L~~~~~~~~~~~~~i~l~D~~~~~~~~~~~~~dl~~~~~~~~~~v~~~~~~~~a~~---- 80 (332)
|++|+||||+|++|++++..|++.|. +|.+++++.. .... ..++.... ....|+....+..+.++
T Consensus 1 ~k~vlItG~sg~iG~~la~~l~~~G~-------~V~~~~r~~~--~~~~-~~~~~~~~-~~~~D~~d~~~~~~~~~~~~~ 69 (225)
T PRK08177 1 KRTALIIGASRGLGLGLVDRLLERGW-------QVTATVRGPQ--QDTA-LQALPGVH-IEKLDMNDPASLDQLLQRLQG 69 (225)
T ss_pred CCEEEEeCCCchHHHHHHHHHHhCCC-------EEEEEeCCCc--chHH-HHhccccc-eEEcCCCCHHHHHHHHHHhhc
Confidence 35799999999999999999998875 8999998642 1111 11111110 11123433322322222
Q ss_pred -CCcEEEEecCCCCCC-----CCChh---HHHhhhHHHHHHHHHHHHhhcCCC-cEEEEEeCChhhHHHHHHHHCCCCCC
Q 019990 81 -DVNIAVMVGGFPRKE-----GMERK---DVMSKNVSIYKAQASALEKHAAPN-CKVLVVANPANTNALILKEFAPSIPA 150 (332)
Q Consensus 81 -~aDiVi~~ag~~~~~-----~~~~~---~~~~~N~~~~~~i~~~i~~~~~~~-~~viv~snp~~~~~~~~~~~~~~~~~ 150 (332)
..|+|||.||..... ..+.. ..+..|......+.+.+..+...+ ..+++.++..... .. .....
T Consensus 70 ~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~iv~~ss~~g~~----~~--~~~~~ 143 (225)
T PRK08177 70 QRFDLLFVNAGISGPAHQSAADATAAEIGQLFLTNAIAPIRLARRLLGQVRPGQGVLAFMSSQLGSV----EL--PDGGE 143 (225)
T ss_pred CCCCEEEEcCcccCCCCCCcccCCHHHHhhheeeeeeHHHHHHHHHHHhhhhcCCEEEEEccCcccc----cc--CCCCC
Confidence 589999999874211 11222 233456555555555554432112 3444444322110 00 11112
Q ss_pred CcEEEeecccHHHHHHHHHHHcCCCCCCeee
Q 019990 151 KNITCLTRLDHNRAMGQISERLKVHVSDVKN 181 (332)
Q Consensus 151 ~~i~~~t~l~~~r~~~~~a~~~~v~~~~v~~ 181 (332)
...|+.++.....+.+.+++.++ +..++.
T Consensus 144 ~~~Y~~sK~a~~~~~~~l~~e~~--~~~i~v 172 (225)
T PRK08177 144 MPLYKASKAALNSMTRSFVAELG--EPTLTV 172 (225)
T ss_pred ccchHHHHHHHHHHHHHHHHHhh--cCCeEE
Confidence 23578888888888888888765 345653
|
|
| >PRK08063 enoyl-(acyl carrier protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=98.22 E-value=1.1e-05 Score=71.74 Aligned_cols=158 Identities=13% Similarity=0.060 Sum_probs=87.4
Q ss_pred CCcEEEEEcCCChhHHHHHHHHHhcccCCCCCCeEEEEE-ecccchhhhhhhHhhhhhhcc---CCccceEEeCCHHHHh
Q 019990 4 NPLRVLVTGAAGQIGYALVPMIARGIMLGPDQPVILHML-DIEPAAEALNGVKMELIDAAF---PLLKGVVATTDVVEAC 79 (332)
Q Consensus 4 ~~~kI~VtGaaG~IGs~l~~~L~~~~~~~~~~~~~i~l~-D~~~~~~~~~~~~~dl~~~~~---~~~~~v~~~~~~~~a~ 79 (332)
..++++||||+|+||++++..|++.|. ++++. +++. +.......++..... .+..|++...++.+++
T Consensus 3 ~~~~vlItGa~g~iG~~~a~~l~~~g~-------~v~~~~~r~~--~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~ 73 (250)
T PRK08063 3 SGKVALVTGSSRGIGKAIALRLAEEGY-------DIAVNYARSR--KAAEETAEEIEALGRKALAVKANVGDVEKIKEMF 73 (250)
T ss_pred CCCEEEEeCCCchHHHHHHHHHHHCCC-------EEEEEcCCCH--HHHHHHHHHHHhcCCeEEEEEcCCCCHHHHHHHH
Confidence 346899999999999999999999875 66553 4332 222222222221110 1123444333333333
Q ss_pred C-------CCcEEEEecCCCCC-C--CCChhH---HHhhhHHHHHHHHHHHHhhc--CCCcEEEEEeCChhhHHHHHHHH
Q 019990 80 K-------DVNIAVMVGGFPRK-E--GMERKD---VMSKNVSIYKAQASALEKHA--APNCKVLVVANPANTNALILKEF 144 (332)
Q Consensus 80 ~-------~aDiVi~~ag~~~~-~--~~~~~~---~~~~N~~~~~~i~~~i~~~~--~~~~~viv~snp~~~~~~~~~~~ 144 (332)
+ ..|+|||.||.... + ..+..+ .+..|......+++++..+. .+..+++++|+....
T Consensus 74 ~~~~~~~~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~g~iv~~sS~~~~-------- 145 (250)
T PRK08063 74 AQIDEEFGRLDVFVNNAASGVLRPAMELEESHWDWTMNINAKALLFCAQEAAKLMEKVGGGKIISLSSLGSI-------- 145 (250)
T ss_pred HHHHHHcCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCeEEEEEcchhhc--------
Confidence 3 57999999986321 1 112221 34567666666666665432 123466666652110
Q ss_pred CCCCCCCcEEEeecccHHHHHHHHHHHcCCCCCCeee
Q 019990 145 APSIPAKNITCLTRLDHNRAMGQISERLKVHVSDVKN 181 (332)
Q Consensus 145 ~~~~~~~~i~~~t~l~~~r~~~~~a~~~~v~~~~v~~ 181 (332)
.+.++...|+.+|.....+...+++.+. +..++.
T Consensus 146 -~~~~~~~~y~~sK~a~~~~~~~~~~~~~--~~~i~v 179 (250)
T PRK08063 146 -RYLENYTTVGVSKAALEALTRYLAVELA--PKGIAV 179 (250)
T ss_pred -cCCCCccHHHHHHHHHHHHHHHHHHHHh--HhCeEE
Confidence 1233334677888888888777776642 344553
|
|
| >PLN02503 fatty acyl-CoA reductase 2 | Back alignment and domain information |
|---|
Probab=98.22 E-value=8.3e-06 Score=81.34 Aligned_cols=122 Identities=20% Similarity=0.148 Sum_probs=71.3
Q ss_pred CCcEEEEEcCCChhHHHHHHHHHhcccCCCCCCeEEEEEecccchhhh-hhhHhhhhh-----------h----------
Q 019990 4 NPLRVLVTGAAGQIGYALVPMIARGIMLGPDQPVILHMLDIEPAAEAL-NGVKMELID-----------A---------- 61 (332)
Q Consensus 4 ~~~kI~VtGaaG~IGs~l~~~L~~~~~~~~~~~~~i~l~D~~~~~~~~-~~~~~dl~~-----------~---------- 61 (332)
+.++|+||||+||+|++|+..|++.+. +..+|+++.+....+.. +....++.+ .
T Consensus 118 ~~k~VlVTGaTGFLGk~LlekLLr~~~----~v~kIy~LvR~k~~~~a~eRl~~~l~~~~lf~~l~~~~g~~~~~~~~~K 193 (605)
T PLN02503 118 RGKNFLITGATGFLAKVLIEKILRTNP----DVGKIYLLIKAKDKEAAIERLKNEVIDAELFKCLQETHGKSYQSFMLSK 193 (605)
T ss_pred cCCEEEEcCCchHHHHHHHHHHHHhCC----CCcEEEEEEecCCchhHHHHHHHHHhhhhhHHHHHHhcCcccccccccc
Confidence 457899999999999999999987432 01267777654321111 111011110 0
Q ss_pred ccCCccceEEeC------CHHHHhCCCcEEEEecCCCCCCCCChhHHHhhhHHHHHHHHHHHHhhcCCCcEEEEEe
Q 019990 62 AFPLLKGVVATT------DVVEACKDVNIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEKHAAPNCKVLVVA 131 (332)
Q Consensus 62 ~~~~~~~v~~~~------~~~~a~~~aDiVi~~ag~~~~~~~~~~~~~~~N~~~~~~i~~~i~~~~~~~~~viv~s 131 (332)
..+..+|+.... +.....+++|+|||+|+.... ..+.....+.|+.++.++++.+.+..... +++.+|
T Consensus 194 i~~v~GDl~d~~LGLs~~~~~~L~~~vDiVIH~AA~v~f-~~~~~~a~~vNV~GT~nLLelA~~~~~lk-~fV~vS 267 (605)
T PLN02503 194 LVPVVGNVCESNLGLEPDLADEIAKEVDVIINSAANTTF-DERYDVAIDINTRGPCHLMSFAKKCKKLK-LFLQVS 267 (605)
T ss_pred EEEEEeeCCCcccCCCHHHHHHHHhcCCEEEECcccccc-ccCHHHHHHHHHHHHHHHHHHHHHcCCCC-eEEEcc
Confidence 001123443321 222334679999999986532 23455677889999999999998763112 344444
|
|
| >PRK07074 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=98.21 E-value=1e-05 Score=72.28 Aligned_cols=149 Identities=20% Similarity=0.174 Sum_probs=83.2
Q ss_pred cEEEEEcCCChhHHHHHHHHHhcccCCCCCCeEEEEEecccchhhhhhhHhhhhhhcc-CCccceEEeCCHHHHhC----
Q 019990 6 LRVLVTGAAGQIGYALVPMIARGIMLGPDQPVILHMLDIEPAAEALNGVKMELIDAAF-PLLKGVVATTDVVEACK---- 80 (332)
Q Consensus 6 ~kI~VtGaaG~IGs~l~~~L~~~~~~~~~~~~~i~l~D~~~~~~~~~~~~~dl~~~~~-~~~~~v~~~~~~~~a~~---- 80 (332)
++++||||+|+||.+++..|++.|. ++.+++++.. .+.....++..... ....|+....++.+++.
T Consensus 3 k~ilItGat~~iG~~la~~L~~~g~-------~v~~~~r~~~--~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~ 73 (257)
T PRK07074 3 RTALVTGAAGGIGQALARRFLAAGD-------RVLALDIDAA--ALAAFADALGDARFVPVACDLTDAASLAAALANAAA 73 (257)
T ss_pred CEEEEECCcchHHHHHHHHHHHCCC-------EEEEEeCCHH--HHHHHHHHhcCCceEEEEecCCCHHHHHHHHHHHHH
Confidence 4799999999999999999998775 7899987532 22222222211111 11223333333333332
Q ss_pred ---CCcEEEEecCCCCCCC---CChhH---HHhhhHHHHHHHHHHHHhhc--CCCcEEEEEeCChhhHHHHHHHHCCCCC
Q 019990 81 ---DVNIAVMVGGFPRKEG---MERKD---VMSKNVSIYKAQASALEKHA--APNCKVLVVANPANTNALILKEFAPSIP 149 (332)
Q Consensus 81 ---~aDiVi~~ag~~~~~~---~~~~~---~~~~N~~~~~~i~~~i~~~~--~~~~~viv~snp~~~~~~~~~~~~~~~~ 149 (332)
+.|+|||++|...... .+..+ .+..|......+++.+.... .....++++|+.... ..+
T Consensus 74 ~~~~~d~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~iv~~sS~~~~---------~~~- 143 (257)
T PRK07074 74 ERGPVDVLVANAGAARAASLHDTTPASWRADNALNLEAAYLCVEAVLEGMLKRSRGAVVNIGSVNGM---------AAL- 143 (257)
T ss_pred HcCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCCeEEEEEcchhhc---------CCC-
Confidence 5799999998643211 12222 23456665555555553221 123456666652111 011
Q ss_pred CCcEEEeecccHHHHHHHHHHHcC
Q 019990 150 AKNITCLTRLDHNRAMGQISERLK 173 (332)
Q Consensus 150 ~~~i~~~t~l~~~r~~~~~a~~~~ 173 (332)
....|+.++....++...+++.++
T Consensus 144 ~~~~y~~sK~a~~~~~~~~a~~~~ 167 (257)
T PRK07074 144 GHPAYSAAKAGLIHYTKLLAVEYG 167 (257)
T ss_pred CCcccHHHHHHHHHHHHHHHHHHh
Confidence 122567788888888888887765
|
|
| >PRK05867 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=98.20 E-value=1.1e-05 Score=72.01 Aligned_cols=160 Identities=17% Similarity=0.177 Sum_probs=90.2
Q ss_pred CCCcEEEEEcCCChhHHHHHHHHHhcccCCCCCCeEEEEEecccchhhhhhhHhhhhhhc---cCCccceEEeCCHHHH-
Q 019990 3 KNPLRVLVTGAAGQIGYALVPMIARGIMLGPDQPVILHMLDIEPAAEALNGVKMELIDAA---FPLLKGVVATTDVVEA- 78 (332)
Q Consensus 3 ~~~~kI~VtGaaG~IGs~l~~~L~~~~~~~~~~~~~i~l~D~~~~~~~~~~~~~dl~~~~---~~~~~~v~~~~~~~~a- 78 (332)
.+.++++||||+|.||.+++..|++.|. +|++.+++. +.++....++.+.. .....|+....++.++
T Consensus 7 ~~~k~vlVtGas~gIG~~ia~~l~~~G~-------~V~~~~r~~--~~~~~~~~~l~~~~~~~~~~~~D~~~~~~~~~~~ 77 (253)
T PRK05867 7 LHGKRALITGASTGIGKRVALAYVEAGA-------QVAIAARHL--DALEKLADEIGTSGGKVVPVCCDVSQHQQVTSML 77 (253)
T ss_pred CCCCEEEEECCCchHHHHHHHHHHHCCC-------EEEEEcCCH--HHHHHHHHHHHhcCCeEEEEEccCCCHHHHHHHH
Confidence 3457899999999999999999999885 889988753 23333333332211 0112344333333332
Q ss_pred ------hCCCcEEEEecCCCCCC---CCChh---HHHhhhHHHHHHHHHHHHhhc---CCCcEEEEEeCChhhHHHHHHH
Q 019990 79 ------CKDVNIAVMVGGFPRKE---GMERK---DVMSKNVSIYKAQASALEKHA---APNCKVLVVANPANTNALILKE 143 (332)
Q Consensus 79 ------~~~aDiVi~~ag~~~~~---~~~~~---~~~~~N~~~~~~i~~~i~~~~---~~~~~viv~snp~~~~~~~~~~ 143 (332)
+...|++||.||..... ..+.+ ..+..|+.....+.+.+..+- .....++++++-.. .
T Consensus 78 ~~~~~~~g~id~lv~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~g~iv~~sS~~~-------~ 150 (253)
T PRK05867 78 DQVTAELGGIDIAVCNAGIITVTPMLDMPLEEFQRLQNTNVTGVFLTAQAAAKAMVKQGQGGVIINTASMSG-------H 150 (253)
T ss_pred HHHHHHhCCCCEEEECCCCCCCCChhhCCHHHHHHHHHhcchhHHHHHHHHHHHHHhcCCCcEEEEECcHHh-------c
Confidence 23689999999864311 12222 245667766555555543321 12245555553211 0
Q ss_pred HCCCCCCC-cEEEeecccHHHHHHHHHHHcCCCCCCeee
Q 019990 144 FAPSIPAK-NITCLTRLDHNRAMGQISERLKVHVSDVKN 181 (332)
Q Consensus 144 ~~~~~~~~-~i~~~t~l~~~r~~~~~a~~~~v~~~~v~~ 181 (332)
. ...+.. ..|+.+|.....+.+.+++.+. +..|+.
T Consensus 151 ~-~~~~~~~~~Y~asKaal~~~~~~la~e~~--~~gI~v 186 (253)
T PRK05867 151 I-INVPQQVSHYCASKAAVIHLTKAMAVELA--PHKIRV 186 (253)
T ss_pred C-CCCCCCccchHHHHHHHHHHHHHHHHHHh--HhCeEE
Confidence 0 111222 3577788877888888887764 345653
|
|
| >PRK09242 tropinone reductase; Provisional | Back alignment and domain information |
|---|
Probab=98.20 E-value=7.4e-06 Score=73.21 Aligned_cols=158 Identities=12% Similarity=0.103 Sum_probs=89.3
Q ss_pred CCcEEEEEcCCChhHHHHHHHHHhcccCCCCCCeEEEEEecccchhhhhhhHhhhhhh----cc-CCccceEEeCCHH--
Q 019990 4 NPLRVLVTGAAGQIGYALVPMIARGIMLGPDQPVILHMLDIEPAAEALNGVKMELIDA----AF-PLLKGVVATTDVV-- 76 (332)
Q Consensus 4 ~~~kI~VtGaaG~IGs~l~~~L~~~~~~~~~~~~~i~l~D~~~~~~~~~~~~~dl~~~----~~-~~~~~v~~~~~~~-- 76 (332)
..++++||||+|.||++++..|.+.|. +|.+++++. +.+.....++... .. ....|+....++.
T Consensus 8 ~~k~~lItGa~~gIG~~~a~~l~~~G~-------~v~~~~r~~--~~~~~~~~~l~~~~~~~~~~~~~~Dl~~~~~~~~~ 78 (257)
T PRK09242 8 DGQTALITGASKGIGLAIAREFLGLGA-------DVLIVARDA--DALAQARDELAEEFPEREVHGLAADVSDDEDRRAI 78 (257)
T ss_pred CCCEEEEeCCCchHHHHHHHHHHHcCC-------EEEEEeCCH--HHHHHHHHHHHhhCCCCeEEEEECCCCCHHHHHHH
Confidence 457899999999999999999998875 899998753 2333333333221 00 1112343322222
Q ss_pred -----HHhCCCcEEEEecCCCCC-C--CCChh---HHHhhhHHHHHHHHHHHHhhc--CCCcEEEEEeCChhhHHHHHHH
Q 019990 77 -----EACKDVNIAVMVGGFPRK-E--GMERK---DVMSKNVSIYKAQASALEKHA--APNCKVLVVANPANTNALILKE 143 (332)
Q Consensus 77 -----~a~~~aDiVi~~ag~~~~-~--~~~~~---~~~~~N~~~~~~i~~~i~~~~--~~~~~viv~snp~~~~~~~~~~ 143 (332)
+.+...|+||+.+|.... + ..+.+ ..+..|......+.+++..+- .+...++++|+....
T Consensus 79 ~~~~~~~~g~id~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~ii~~sS~~~~------- 151 (257)
T PRK09242 79 LDWVEDHWDGLHILVNNAGGNIRKAAIDYTEDEWRGIFETNLFSAFELSRYAHPLLKQHASSAIVNIGSVSGL------- 151 (257)
T ss_pred HHHHHHHcCCCCEEEECCCCCCCCChhhCCHHHHHHHHhhhhHHHHHHHHHHHHHHHhcCCceEEEECccccC-------
Confidence 223467999999986321 1 11222 245667766656655543221 123466666653211
Q ss_pred HCCCCCCCcEEEeecccHHHHHHHHHHHcCCCCCCeee
Q 019990 144 FAPSIPAKNITCLTRLDHNRAMGQISERLKVHVSDVKN 181 (332)
Q Consensus 144 ~~~~~~~~~i~~~t~l~~~r~~~~~a~~~~v~~~~v~~ 181 (332)
.+.+....|+.++.....+...++..+. +..++.
T Consensus 152 --~~~~~~~~Y~~sK~a~~~~~~~la~e~~--~~~i~v 185 (257)
T PRK09242 152 --THVRSGAPYGMTKAALLQMTRNLAVEWA--EDGIRV 185 (257)
T ss_pred --CCCCCCcchHHHHHHHHHHHHHHHHHHH--HhCeEE
Confidence 1223333577788777777777776653 344553
|
|
| >PRK08340 glucose-1-dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=98.20 E-value=1.7e-05 Score=71.11 Aligned_cols=155 Identities=13% Similarity=0.110 Sum_probs=86.3
Q ss_pred cEEEEEcCCChhHHHHHHHHHhcccCCCCCCeEEEEEecccchhhhhhhHhhhhhhc-c-CCccceEEeCCHHHHh----
Q 019990 6 LRVLVTGAAGQIGYALVPMIARGIMLGPDQPVILHMLDIEPAAEALNGVKMELIDAA-F-PLLKGVVATTDVVEAC---- 79 (332)
Q Consensus 6 ~kI~VtGaaG~IGs~l~~~L~~~~~~~~~~~~~i~l~D~~~~~~~~~~~~~dl~~~~-~-~~~~~v~~~~~~~~a~---- 79 (332)
|+|+||||+|.||++++..|++.|. +|.+.+++. +.+.....++.+.. . ....|++...++.+.+
T Consensus 1 m~vlItGas~gIG~aia~~l~~~G~-------~V~~~~r~~--~~~~~~~~~l~~~~~~~~~~~Dv~d~~~~~~~~~~~~ 71 (259)
T PRK08340 1 MNVLVTASSRGIGFNVARELLKKGA-------RVVISSRNE--ENLEKALKELKEYGEVYAVKADLSDKDDLKNLVKEAW 71 (259)
T ss_pred CeEEEEcCCcHHHHHHHHHHHHcCC-------EEEEEeCCH--HHHHHHHHHHHhcCCceEEEcCCCCHHHHHHHHHHHH
Confidence 4799999999999999999999885 788988753 23333333332211 1 1123444333333322
Q ss_pred ---CCCcEEEEecCCCCC-----CCCChhHH---HhhhHHH----HHHHHHHHHhhcCCCcEEEEEeCChhhHHHHHHHH
Q 019990 80 ---KDVNIAVMVGGFPRK-----EGMERKDV---MSKNVSI----YKAQASALEKHAAPNCKVLVVANPANTNALILKEF 144 (332)
Q Consensus 80 ---~~aDiVi~~ag~~~~-----~~~~~~~~---~~~N~~~----~~~i~~~i~~~~~~~~~viv~snp~~~~~~~~~~~ 144 (332)
...|++|+.||.... ...+..++ +..|... .+.++..+.+.. ..+++|++|+....
T Consensus 72 ~~~g~id~li~naG~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~l~~~~~~~-~~g~iv~isS~~~~-------- 142 (259)
T PRK08340 72 ELLGGIDALVWNAGNVRCEPCMLHEAGYSDWLEAALLHLVAPGYLTTLLIQAWLEKK-MKGVLVYLSSVSVK-------- 142 (259)
T ss_pred HhcCCCCEEEECCCCCCCCccccccccHHHHHHHHhhcchHHHHHHHHHHHHHHhcC-CCCEEEEEeCcccC--------
Confidence 368999999986321 11222222 2334322 233444443222 23566776653211
Q ss_pred CCCCCCCcEEEeecccHHHHHHHHHHHcCCCCCCeee
Q 019990 145 APSIPAKNITCLTRLDHNRAMGQISERLKVHVSDVKN 181 (332)
Q Consensus 145 ~~~~~~~~i~~~t~l~~~r~~~~~a~~~~v~~~~v~~ 181 (332)
.+.+....|+.+|-....+.+.+++.++ +..|+.
T Consensus 143 -~~~~~~~~y~~sKaa~~~~~~~la~e~~--~~gI~v 176 (259)
T PRK08340 143 -EPMPPLVLADVTRAGLVQLAKGVSRTYG--GKGIRA 176 (259)
T ss_pred -CCCCCchHHHHHHHHHHHHHHHHHHHhC--CCCEEE
Confidence 1233333566677777777788888765 456664
|
|
| >PRK07792 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=98.19 E-value=1.6e-05 Score=73.31 Aligned_cols=164 Identities=15% Similarity=0.043 Sum_probs=92.0
Q ss_pred CCcEEEEEcCCChhHHHHHHHHHhcccCCCCCCeEEEEEecccchhhhhhhHhhhhhhc--c-CCccceEEeCCHHHHh-
Q 019990 4 NPLRVLVTGAAGQIGYALVPMIARGIMLGPDQPVILHMLDIEPAAEALNGVKMELIDAA--F-PLLKGVVATTDVVEAC- 79 (332)
Q Consensus 4 ~~~kI~VtGaaG~IGs~l~~~L~~~~~~~~~~~~~i~l~D~~~~~~~~~~~~~dl~~~~--~-~~~~~v~~~~~~~~a~- 79 (332)
+.++++||||+|+||.+++..|++.|. ++++.|.... +.+.....++.... . ....|+....+..+.+
T Consensus 11 ~~k~~lVTGas~gIG~~ia~~L~~~Ga-------~Vv~~~~~~~-~~~~~~~~~i~~~g~~~~~~~~Dv~d~~~~~~~~~ 82 (306)
T PRK07792 11 SGKVAVVTGAAAGLGRAEALGLARLGA-------TVVVNDVASA-LDASDVLDEIRAAGAKAVAVAGDISQRATADELVA 82 (306)
T ss_pred CCCEEEEECCCChHHHHHHHHHHHCCC-------EEEEecCCch-hHHHHHHHHHHhcCCeEEEEeCCCCCHHHHHHHHH
Confidence 457899999999999999999999875 7888887432 12222222332211 0 1123443333333222
Q ss_pred -----CCCcEEEEecCCCCCC---CCCh---hHHHhhhHHHHHHHHHHHHhhc---------CCCcEEEEEeCChhhHHH
Q 019990 80 -----KDVNIAVMVGGFPRKE---GMER---KDVMSKNVSIYKAQASALEKHA---------APNCKVLVVANPANTNAL 139 (332)
Q Consensus 80 -----~~aDiVi~~ag~~~~~---~~~~---~~~~~~N~~~~~~i~~~i~~~~---------~~~~~viv~snp~~~~~~ 139 (332)
...|++||.||..... ..+. ...+..|+.....+.+++..+- ...++++++++....
T Consensus 83 ~~~~~g~iD~li~nAG~~~~~~~~~~~~~~~~~~~~vn~~g~~~l~~~~~~~~~~~~~~~~~~~~g~iv~isS~~~~--- 159 (306)
T PRK07792 83 TAVGLGGLDIVVNNAGITRDRMLFNMSDEEWDAVIAVHLRGHFLLTRNAAAYWRAKAKAAGGPVYGRIVNTSSEAGL--- 159 (306)
T ss_pred HHHHhCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHhhhHHHHHHHHHHHHHHHhhcccCCCCCcEEEEECCcccc---
Confidence 3589999999975431 1222 2345677766666665543211 012466666643211
Q ss_pred HHHHHCCCCCCCcEEEeecccHHHHHHHHHHHcCCCCCCeeeeEEEec
Q 019990 140 ILKEFAPSIPAKNITCLTRLDHNRAMGQISERLKVHVSDVKNVIIWGN 187 (332)
Q Consensus 140 ~~~~~~~~~~~~~i~~~t~l~~~r~~~~~a~~~~v~~~~v~~~~V~G~ 187 (332)
.+.+....|+.+|.....+...+++.+. +..|+. +++.+
T Consensus 160 ------~~~~~~~~Y~asKaal~~l~~~la~e~~--~~gI~v-n~i~P 198 (306)
T PRK07792 160 ------VGPVGQANYGAAKAGITALTLSAARALG--RYGVRA-NAICP 198 (306)
T ss_pred ------cCCCCCchHHHHHHHHHHHHHHHHHHhh--hcCeEE-EEECC
Confidence 1112222467788777777777777643 355663 44554
|
|
| >PRK06139 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=98.19 E-value=2.5e-05 Score=72.78 Aligned_cols=150 Identities=17% Similarity=0.140 Sum_probs=86.3
Q ss_pred CCcEEEEEcCCChhHHHHHHHHHhcccCCCCCCeEEEEEecccchhhhhhhHhhhhhhcc---CCccceEEeCCHHHHh-
Q 019990 4 NPLRVLVTGAAGQIGYALVPMIARGIMLGPDQPVILHMLDIEPAAEALNGVKMELIDAAF---PLLKGVVATTDVVEAC- 79 (332)
Q Consensus 4 ~~~kI~VtGaaG~IGs~l~~~L~~~~~~~~~~~~~i~l~D~~~~~~~~~~~~~dl~~~~~---~~~~~v~~~~~~~~a~- 79 (332)
..++|+||||+|.||.+++..|++.|. +|++++++. +.++....++..... ....|++...++.+++
T Consensus 6 ~~k~vlITGAs~GIG~aia~~la~~G~-------~Vvl~~R~~--~~l~~~~~~~~~~g~~~~~~~~Dv~d~~~v~~~~~ 76 (330)
T PRK06139 6 HGAVVVITGASSGIGQATAEAFARRGA-------RLVLAARDE--EALQAVAEECRALGAEVLVVPTDVTDADQVKALAT 76 (330)
T ss_pred CCCEEEEcCCCCHHHHHHHHHHHHCCC-------EEEEEECCH--HHHHHHHHHHHhcCCcEEEEEeeCCCHHHHHHHHH
Confidence 457899999999999999999999885 899998753 334433333322111 1123444333333332
Q ss_pred ------CCCcEEEEecCCCCCC---CCChh---HHHhhhHHHHHHHHH----HHHhhcCCCcEEEEEeCChhhHHHHHHH
Q 019990 80 ------KDVNIAVMVGGFPRKE---GMERK---DVMSKNVSIYKAQAS----ALEKHAAPNCKVLVVANPANTNALILKE 143 (332)
Q Consensus 80 ------~~aDiVi~~ag~~~~~---~~~~~---~~~~~N~~~~~~i~~----~i~~~~~~~~~viv~snp~~~~~~~~~~ 143 (332)
...|++|+.||..... ..+.+ ..++.|......+.. .+.+.. .+.+|++++....
T Consensus 77 ~~~~~~g~iD~lVnnAG~~~~~~~~~~~~e~~~~~~~vN~~g~~~~~~~~lp~~~~~~--~g~iV~isS~~~~------- 147 (330)
T PRK06139 77 QAASFGGRIDVWVNNVGVGAVGRFEETPIEAHEQVIQTNLIGYMRDAHAALPIFKKQG--HGIFINMISLGGF------- 147 (330)
T ss_pred HHHHhcCCCCEEEECCCcCCCCCcccCCHHHHHHHHHhhhHHHHHHHHHHHHHHHHcC--CCEEEEEcChhhc-------
Confidence 4679999999864221 11222 346667655544433 344432 3466666642211
Q ss_pred HCCCCCCCcEEEeecccHHHHHHHHHHHcC
Q 019990 144 FAPSIPAKNITCLTRLDHNRAMGQISERLK 173 (332)
Q Consensus 144 ~~~~~~~~~i~~~t~l~~~r~~~~~a~~~~ 173 (332)
.+.|....|+.+|.....+...++..+.
T Consensus 148 --~~~p~~~~Y~asKaal~~~~~sL~~El~ 175 (330)
T PRK06139 148 --AAQPYAAAYSASKFGLRGFSEALRGELA 175 (330)
T ss_pred --CCCCCchhHHHHHHHHHHHHHHHHHHhC
Confidence 1223333567777776667777776654
|
|
| >PRK07424 bifunctional sterol desaturase/short chain dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=98.19 E-value=9.6e-06 Score=77.38 Aligned_cols=106 Identities=17% Similarity=0.084 Sum_probs=65.0
Q ss_pred CCCcEEEEEcCCChhHHHHHHHHHhcccCCCCCCeEEEEEecccchhhhhhhHhhhhhhcc-CCccceEEeCCHHHHhCC
Q 019990 3 KNPLRVLVTGAAGQIGYALVPMIARGIMLGPDQPVILHMLDIEPAAEALNGVKMELIDAAF-PLLKGVVATTDVVEACKD 81 (332)
Q Consensus 3 ~~~~kI~VtGaaG~IGs~l~~~L~~~~~~~~~~~~~i~l~D~~~~~~~~~~~~~dl~~~~~-~~~~~v~~~~~~~~a~~~ 81 (332)
.++++|+||||+|+||++++..|.+.|. ++.+++++. +.+.....+. .... ....|+....++.+.+.+
T Consensus 176 l~gK~VLITGASgGIG~aLA~~La~~G~-------~Vi~l~r~~--~~l~~~~~~~-~~~v~~v~~Dvsd~~~v~~~l~~ 245 (406)
T PRK07424 176 LKGKTVAVTGASGTLGQALLKELHQQGA-------KVVALTSNS--DKITLEINGE-DLPVKTLHWQVGQEAALAELLEK 245 (406)
T ss_pred CCCCEEEEeCCCCHHHHHHHHHHHHCCC-------EEEEEeCCH--HHHHHHHhhc-CCCeEEEEeeCCCHHHHHHHhCC
Confidence 3467899999999999999999998875 788888753 2221111000 0000 011233333345556788
Q ss_pred CcEEEEecCCCCCCCCCh---hHHHhhhHHHHHHHHHHHH
Q 019990 82 VNIAVMVGGFPRKEGMER---KDVMSKNVSIYKAQASALE 118 (332)
Q Consensus 82 aDiVi~~ag~~~~~~~~~---~~~~~~N~~~~~~i~~~i~ 118 (332)
.|++|+.||.......+. .+.++.|......+.+++.
T Consensus 246 IDiLInnAGi~~~~~~s~e~~~~~~~vNv~g~i~Li~a~l 285 (406)
T PRK07424 246 VDILIINHGINVHGERTPEAINKSYEVNTFSAWRLMELFF 285 (406)
T ss_pred CCEEEECCCcCCCCCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999998743322332 2456778776666665543
|
|
| >PRK06057 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=98.19 E-value=1.7e-05 Score=70.82 Aligned_cols=147 Identities=14% Similarity=0.081 Sum_probs=77.2
Q ss_pred CCcEEEEEcCCChhHHHHHHHHHhcccCCCCCCeEEEEEecccchhhhhhhHhhhhhhccCCccceEEeCCHHHHh----
Q 019990 4 NPLRVLVTGAAGQIGYALVPMIARGIMLGPDQPVILHMLDIEPAAEALNGVKMELIDAAFPLLKGVVATTDVVEAC---- 79 (332)
Q Consensus 4 ~~~kI~VtGaaG~IGs~l~~~L~~~~~~~~~~~~~i~l~D~~~~~~~~~~~~~dl~~~~~~~~~~v~~~~~~~~a~---- 79 (332)
+.++|+||||+|+||.+++..|++.|. +++++|++.. .+.....++.. .....|+....++.+.+
T Consensus 6 ~~~~vlItGasggIG~~~a~~l~~~G~-------~v~~~~r~~~--~~~~~~~~~~~--~~~~~D~~~~~~~~~~~~~~~ 74 (255)
T PRK06057 6 AGRVAVITGGGSGIGLATARRLAAEGA-------TVVVGDIDPE--AGKAAADEVGG--LFVPTDVTDEDAVNALFDTAA 74 (255)
T ss_pred CCCEEEEECCCchHHHHHHHHHHHcCC-------EEEEEeCCHH--HHHHHHHHcCC--cEEEeeCCCHHHHHHHHHHHH
Confidence 357899999999999999999998875 8899987532 22211122211 01112333322333333
Q ss_pred ---CCCcEEEEecCCCCC---C--CCCh---hHHHhhhHHHHHH----HHHHHHhhcCCCcEEEEEeCChhhHHHHHHHH
Q 019990 80 ---KDVNIAVMVGGFPRK---E--GMER---KDVMSKNVSIYKA----QASALEKHAAPNCKVLVVANPANTNALILKEF 144 (332)
Q Consensus 80 ---~~aDiVi~~ag~~~~---~--~~~~---~~~~~~N~~~~~~----i~~~i~~~~~~~~~viv~snp~~~~~~~~~~~ 144 (332)
...|+|||+||.... + ..+. ...++.|....-. +.+.+.+.. ...++++|+....
T Consensus 75 ~~~~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~l~~~~--~g~iv~~sS~~~~-------- 144 (255)
T PRK06057 75 ETYGSVDIAFNNAGISPPEDDSILNTGLDAWQRVQDVNLTSVYLCCKAALPHMVRQG--KGSIINTASFVAV-------- 144 (255)
T ss_pred HHcCCCCEEEECCCcCCCCCCCcccCCHHHHHHHHHHhcHHHHHHHHHHHHHHHHhC--CcEEEEEcchhhc--------
Confidence 357999999986321 1 1111 2345566554433 334444332 3466666653211
Q ss_pred CCCCCCC-cEEEeecccHHHHHHHHHHHc
Q 019990 145 APSIPAK-NITCLTRLDHNRAMGQISERL 172 (332)
Q Consensus 145 ~~~~~~~-~i~~~t~l~~~r~~~~~a~~~ 172 (332)
.+.++. ..|+.++.....+...++..+
T Consensus 145 -~g~~~~~~~Y~~sKaal~~~~~~l~~~~ 172 (255)
T PRK06057 145 -MGSATSQISYTASKGGVLAMSRELGVQF 172 (255)
T ss_pred -cCCCCCCcchHHHHHHHHHHHHHHHHHH
Confidence 111112 246666655545555555444
|
|
| >PRK08703 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=98.18 E-value=4.1e-05 Score=67.63 Aligned_cols=158 Identities=13% Similarity=0.097 Sum_probs=87.3
Q ss_pred CcEEEEEcCCChhHHHHHHHHHhcccCCCCCCeEEEEEecccchhhhhhhHhhhhhhc---c-CCccceEEe--CCHHH-
Q 019990 5 PLRVLVTGAAGQIGYALVPMIARGIMLGPDQPVILHMLDIEPAAEALNGVKMELIDAA---F-PLLKGVVAT--TDVVE- 77 (332)
Q Consensus 5 ~~kI~VtGaaG~IGs~l~~~L~~~~~~~~~~~~~i~l~D~~~~~~~~~~~~~dl~~~~---~-~~~~~v~~~--~~~~~- 77 (332)
.++|+||||+|++|.+++..|++.|. +|++++++. +.+.....++.... . ....|+... .+..+
T Consensus 6 ~k~vlItG~sggiG~~la~~l~~~g~-------~V~~~~r~~--~~~~~~~~~l~~~~~~~~~~~~~D~~~~~~~~~~~~ 76 (239)
T PRK08703 6 DKTILVTGASQGLGEQVAKAYAAAGA-------TVILVARHQ--KKLEKVYDAIVEAGHPEPFAIRFDLMSAEEKEFEQF 76 (239)
T ss_pred CCEEEEECCCCcHHHHHHHHHHHcCC-------EEEEEeCCh--HHHHHHHHHHHHcCCCCcceEEeeecccchHHHHHH
Confidence 47899999999999999999998875 799999864 23332222221110 0 011233211 11111
Q ss_pred ------Hh-CCCcEEEEecCCCC--CC--CCChh---HHHhhhHHHHHHHHHHHHhhc--CCCcEEEEEeCChhhHHHHH
Q 019990 78 ------AC-KDVNIAVMVGGFPR--KE--GMERK---DVMSKNVSIYKAQASALEKHA--APNCKVLVVANPANTNALIL 141 (332)
Q Consensus 78 ------a~-~~aDiVi~~ag~~~--~~--~~~~~---~~~~~N~~~~~~i~~~i~~~~--~~~~~viv~snp~~~~~~~~ 141 (332)
.+ ...|+|||+||... .+ ..+.. ..+..|+.....+.+.+.+.- .....++++++....
T Consensus 77 ~~~i~~~~~~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~~n~~g~~~l~~~~~~~~~~~~~~~iv~~ss~~~~----- 151 (239)
T PRK08703 77 AATIAEATQGKLDGIVHCAGYFYALSPLDFQTVAEWVNQYRINTVAPMGLTRALFPLLKQSPDASVIFVGESHGE----- 151 (239)
T ss_pred HHHHHHHhCCCCCEEEEeccccccCCCccccCHHHHHHHHHHhhhHHHHHHHHHHHHHHhCCCCEEEEEeccccc-----
Confidence 12 45799999998632 11 12222 235667765544544443321 123466666542211
Q ss_pred HHHCCCCCCCcEEEeecccHHHHHHHHHHHcCCCCCCeee
Q 019990 142 KEFAPSIPAKNITCLTRLDHNRAMGQISERLKVHVSDVKN 181 (332)
Q Consensus 142 ~~~~~~~~~~~i~~~t~l~~~r~~~~~a~~~~v~~~~v~~ 181 (332)
.+.+....|+.+|.....+.+.++..++-. ..++.
T Consensus 152 ----~~~~~~~~Y~~sKaa~~~~~~~la~e~~~~-~~i~v 186 (239)
T PRK08703 152 ----TPKAYWGGFGASKAALNYLCKVAADEWERF-GNLRA 186 (239)
T ss_pred ----cCCCCccchHHhHHHHHHHHHHHHHHhccC-CCeEE
Confidence 112222357888888888888888876533 23553
|
|
| >PRK06949 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=98.18 E-value=7.5e-06 Score=73.06 Aligned_cols=157 Identities=16% Similarity=0.191 Sum_probs=85.5
Q ss_pred CcEEEEEcCCChhHHHHHHHHHhcccCCCCCCeEEEEEecccchhhhhhhHhhhhhhc--c-CCccceEEeCCHHHHh--
Q 019990 5 PLRVLVTGAAGQIGYALVPMIARGIMLGPDQPVILHMLDIEPAAEALNGVKMELIDAA--F-PLLKGVVATTDVVEAC-- 79 (332)
Q Consensus 5 ~~kI~VtGaaG~IGs~l~~~L~~~~~~~~~~~~~i~l~D~~~~~~~~~~~~~dl~~~~--~-~~~~~v~~~~~~~~a~-- 79 (332)
.++|+||||+|+||++++..|++.+. +|++++++. +.++....++.... . ....|+....++.+.+
T Consensus 9 ~k~ilItGasg~IG~~~a~~l~~~G~-------~Vi~~~r~~--~~~~~~~~~l~~~~~~~~~~~~D~~~~~~~~~~~~~ 79 (258)
T PRK06949 9 GKVALVTGASSGLGARFAQVLAQAGA-------KVVLASRRV--ERLKELRAEIEAEGGAAHVVSLDVTDYQSIKAAVAH 79 (258)
T ss_pred CCEEEEECCCcHHHHHHHHHHHHCCC-------EEEEEeCCH--HHHHHHHHHHHhcCCcEEEEEecCCCHHHHHHHHHH
Confidence 57899999999999999999998875 788888753 23332222221110 0 1112333222333333
Q ss_pred -----CCCcEEEEecCCCCCC---CCCh---hHHHhhhHHHHHHHHHHHHh----hcC------CCcEEEEEeCChhhHH
Q 019990 80 -----KDVNIAVMVGGFPRKE---GMER---KDVMSKNVSIYKAQASALEK----HAA------PNCKVLVVANPANTNA 138 (332)
Q Consensus 80 -----~~aDiVi~~ag~~~~~---~~~~---~~~~~~N~~~~~~i~~~i~~----~~~------~~~~viv~snp~~~~~ 138 (332)
...|++|+.+|..... ..+. ...+..|......+.+.+.. ... +..+++++++....
T Consensus 80 ~~~~~~~~d~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~iv~~sS~~~~-- 157 (258)
T PRK06949 80 AETEAGTIDILVNNSGVSTTQKLVDVTPADFDFVFDTNTRGAFFVAQEVAKRMIARAKGAGNTKPGGRIINIASVAGL-- 157 (258)
T ss_pred HHHhcCCCCEEEECCCCCCCCCcccCCHHHHHHHHhhcchhhHHHHHHHHHHHHhcCCcCCCCCCCeEEEEECccccc--
Confidence 3589999999863221 1111 22455666555555544432 210 12456666542110
Q ss_pred HHHHHHCCCCCCCcEEEeecccHHHHHHHHHHHcCCCCCCeee
Q 019990 139 LILKEFAPSIPAKNITCLTRLDHNRAMGQISERLKVHVSDVKN 181 (332)
Q Consensus 139 ~~~~~~~~~~~~~~i~~~t~l~~~r~~~~~a~~~~v~~~~v~~ 181 (332)
.+.+....|+.++.....+...+++.++ +..++.
T Consensus 158 -------~~~~~~~~Y~~sK~a~~~~~~~la~~~~--~~~i~v 191 (258)
T PRK06949 158 -------RVLPQIGLYCMSKAAVVHMTRAMALEWG--RHGINV 191 (258)
T ss_pred -------CCCCCccHHHHHHHHHHHHHHHHHHHHH--hcCeEE
Confidence 1123333466677777777777777653 234553
|
|
| >PRK08217 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=98.17 E-value=9.7e-06 Score=71.94 Aligned_cols=152 Identities=14% Similarity=0.131 Sum_probs=81.5
Q ss_pred CCCCCcEEEEEcCCChhHHHHHHHHHhcccCCCCCCeEEEEEecccchhhhhhhHhhhhhhc--c-CCccceEEeCCHHH
Q 019990 1 MAKNPLRVLVTGAAGQIGYALVPMIARGIMLGPDQPVILHMLDIEPAAEALNGVKMELIDAA--F-PLLKGVVATTDVVE 77 (332)
Q Consensus 1 m~~~~~kI~VtGaaG~IGs~l~~~L~~~~~~~~~~~~~i~l~D~~~~~~~~~~~~~dl~~~~--~-~~~~~v~~~~~~~~ 77 (332)
|..+.++++||||+|+||++++..|++.|. +++++|++.. .+.....++.... . ....|+....+..+
T Consensus 1 ~~~~~~~~lItG~~g~iG~~~a~~l~~~G~-------~vi~~~r~~~--~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~ 71 (253)
T PRK08217 1 MDLKDKVIVITGGAQGLGRAMAEYLAQKGA-------KLALIDLNQE--KLEEAVAECGALGTEVRGYAANVTDEEDVEA 71 (253)
T ss_pred CCCCCCEEEEECCCchHHHHHHHHHHHCCC-------EEEEEeCCHH--HHHHHHHHHHhcCCceEEEEcCCCCHHHHHH
Confidence 555667899999999999999999998875 7888887542 2222222222110 0 11123332222222
Q ss_pred Hh-------CCCcEEEEecCCCCC------------CCCChh---HHHhhhHHHHHHHHH----HHHhhcCCCcEEEEEe
Q 019990 78 AC-------KDVNIAVMVGGFPRK------------EGMERK---DVMSKNVSIYKAQAS----ALEKHAAPNCKVLVVA 131 (332)
Q Consensus 78 a~-------~~aDiVi~~ag~~~~------------~~~~~~---~~~~~N~~~~~~i~~----~i~~~~~~~~~viv~s 131 (332)
.+ ...|+|||.+|.... ...+.. ..+..|+.....+.+ .+.+.. ....++++|
T Consensus 72 ~~~~~~~~~~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~l~~~~-~~~~iv~~s 150 (253)
T PRK08217 72 TFAQIAEDFGQLNGLINNAGILRDGLLVKAKDGKVTSKMSLEQFQSVIDVNLTGVFLCGREAAAKMIESG-SKGVIINIS 150 (253)
T ss_pred HHHHHHHHcCCCCEEEECCCccCcCcccccccccccccCCHHHHHHHHhhhhHHHHHHHHHHHHHHHhcC-CCeEEEEEc
Confidence 22 347999999986321 111111 234556655543333 333322 234555555
Q ss_pred CChhhHHHHHHHHCCCCCCCcEEEeecccHHHHHHHHHHHc
Q 019990 132 NPANTNALILKEFAPSIPAKNITCLTRLDHNRAMGQISERL 172 (332)
Q Consensus 132 np~~~~~~~~~~~~~~~~~~~i~~~t~l~~~r~~~~~a~~~ 172 (332)
. ... .+.+....|+.++.....+...+++.+
T Consensus 151 s-~~~---------~~~~~~~~Y~~sK~a~~~l~~~la~~~ 181 (253)
T PRK08217 151 S-IAR---------AGNMGQTNYSASKAGVAAMTVTWAKEL 181 (253)
T ss_pred c-ccc---------cCCCCCchhHHHHHHHHHHHHHHHHHH
Confidence 3 211 122333356777776667766677664
|
|
| >TIGR01830 3oxo_ACP_reduc 3-oxoacyl-(acyl-carrier-protein) reductase | Back alignment and domain information |
|---|
Probab=98.17 E-value=1.2e-05 Score=70.65 Aligned_cols=149 Identities=17% Similarity=0.147 Sum_probs=86.1
Q ss_pred EEEEcCCChhHHHHHHHHHhcccCCCCCCeEEEEEecccchhhhhhhHhhhhhhc--c-CCccceEEeCCHHHHh-----
Q 019990 8 VLVTGAAGQIGYALVPMIARGIMLGPDQPVILHMLDIEPAAEALNGVKMELIDAA--F-PLLKGVVATTDVVEAC----- 79 (332)
Q Consensus 8 I~VtGaaG~IGs~l~~~L~~~~~~~~~~~~~i~l~D~~~~~~~~~~~~~dl~~~~--~-~~~~~v~~~~~~~~a~----- 79 (332)
|+||||+|++|++++..|++.|. ++.+++++.. +.+.....++.+.. . ....|++...++.+.+
T Consensus 1 vlItG~~g~iG~~la~~l~~~G~-------~v~~~~r~~~-~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~ 72 (239)
T TIGR01830 1 ALVTGASRGIGRAIALKLAKEGA-------KVIITYRSSE-EGAEEVVEELKAYGVKALGVVCDVSDREDVKAVVEEIEE 72 (239)
T ss_pred CEEECCCcHHHHHHHHHHHHCCC-------EEEEEeCCch-hHHHHHHHHHHhcCCceEEEEecCCCHHHHHHHHHHHHH
Confidence 57999999999999999998886 7888887531 12222222332211 0 1123443333333333
Q ss_pred --CCCcEEEEecCCCCCC---CCC---hhHHHhhhHHHHHHHHHHHHhhc--CCCcEEEEEeCChhhHHHHHHHHCCCCC
Q 019990 80 --KDVNIAVMVGGFPRKE---GME---RKDVMSKNVSIYKAQASALEKHA--APNCKVLVVANPANTNALILKEFAPSIP 149 (332)
Q Consensus 80 --~~aDiVi~~ag~~~~~---~~~---~~~~~~~N~~~~~~i~~~i~~~~--~~~~~viv~snp~~~~~~~~~~~~~~~~ 149 (332)
...|+|||.+|..... +.+ ....+..|......+.+.+.++. ....+++++|+.... .+.+
T Consensus 73 ~~~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~~v~~sS~~~~---------~g~~ 143 (239)
T TIGR01830 73 ELGPIDILVNNAGITRDNLLMRMKEEDWDAVIDTNLTGVFNLTQAVLRIMIKQRSGRIINISSVVGL---------MGNA 143 (239)
T ss_pred HhCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCeEEEEECCcccc---------CCCC
Confidence 3469999999864211 111 13356778887777777776542 123366666653321 1223
Q ss_pred CCcEEEeecccHHHHHHHHHHHcC
Q 019990 150 AKNITCLTRLDHNRAMGQISERLK 173 (332)
Q Consensus 150 ~~~i~~~t~l~~~r~~~~~a~~~~ 173 (332)
....|+.++.....+...+++.++
T Consensus 144 ~~~~y~~~k~a~~~~~~~l~~~~~ 167 (239)
T TIGR01830 144 GQANYAASKAGVIGFTKSLAKELA 167 (239)
T ss_pred CCchhHHHHHHHHHHHHHHHHHHh
Confidence 333567777766667777777654
|
This model represents 3-oxoacyl-[ACP] reductase, also called 3-ketoacyl-acyl carrier protein reductase, an enzyme of fatty acid biosynthesis. |
| >KOG1431 consensus GDP-L-fucose synthetase [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.17 E-value=1.2e-05 Score=69.09 Aligned_cols=278 Identities=16% Similarity=0.166 Sum_probs=147.7
Q ss_pred CcEEEEEcCCChhHHHHHHHHHhcccCCCCCCeEEEEEecccchhhhhhhHhhhhhhccCCccceEEeCCHHHHh--CCC
Q 019990 5 PLRVLVTGAAGQIGYALVPMIARGIMLGPDQPVILHMLDIEPAAEALNGVKMELIDAAFPLLKGVVATTDVVEAC--KDV 82 (332)
Q Consensus 5 ~~kI~VtGaaG~IGs~l~~~L~~~~~~~~~~~~~i~l~D~~~~~~~~~~~~~dl~~~~~~~~~~v~~~~~~~~a~--~~a 82 (332)
++||+|+|++|-||+++..-+..++.-+ ...++....+ .||.. ..+.++-+ ..-
T Consensus 1 s~kIlVtGg~GLVGsAi~~vv~~q~~~~----e~wvf~~skd---------~DLt~-----------~a~t~~lF~~ekP 56 (315)
T KOG1431|consen 1 SKKILVTGGTGLVGSAIVKVVQEQGFDD----ENWVFIGSKD---------ADLTN-----------LADTRALFESEKP 56 (315)
T ss_pred CceEEEecCCchHHHHHHHHHHhcCCCC----cceEEecccc---------ccccc-----------hHHHHHHHhccCC
Confidence 4799999999999999999998877521 2466655321 12211 12222222 234
Q ss_pred cEEEEecCC----CCCCCCChhHHHhhhHHHHHHHHHHHHhhcCCCcEEEEEe--------CChhhHHHHHHHHCCCCCC
Q 019990 83 NIAVMVGGF----PRKEGMERKDVMSKNVSIYKAQASALEKHAAPNCKVLVVA--------NPANTNALILKEFAPSIPA 150 (332)
Q Consensus 83 DiVi~~ag~----~~~~~~~~~~~~~~N~~~~~~i~~~i~~~~~~~~~viv~s--------np~~~~~~~~~~~~~~~~~ 150 (332)
-.|||+|+. -+.... ..|++..|+.+-.+++..+-.++-.++..+..| -|++-.. -.. ....|
T Consensus 57 thVIhlAAmVGGlf~N~~y-nldF~r~Nl~indNVlhsa~e~gv~K~vsclStCIfPdkt~yPIdEtm---vh~-gpphp 131 (315)
T KOG1431|consen 57 THVIHLAAMVGGLFHNNTY-NLDFIRKNLQINDNVLHSAHEHGVKKVVSCLSTCIFPDKTSYPIDETM---VHN-GPPHP 131 (315)
T ss_pred ceeeehHhhhcchhhcCCC-chHHHhhcceechhHHHHHHHhchhhhhhhcceeecCCCCCCCCCHHH---hcc-CCCCC
Confidence 578887743 222222 367889999888888888877762222222211 2333211 111 11233
Q ss_pred CcE-EEeecccHHHHHHHHHHHcCCCCCCeeeeEEEecCC------CceeecccC-c---cc------ccCCCCcchhhh
Q 019990 151 KNI-TCLTRLDHNRAMGQISERLKVHVSDVKNVIIWGNHS------STQYPDVNH-A---TV------TTSKGEKPVREA 213 (332)
Q Consensus 151 ~~i-~~~t~l~~~r~~~~~a~~~~v~~~~v~~~~V~G~hg------~~~v~~~s~-~---~v------~~~~~~~p~~~~ 213 (332)
.++ |+.++-...-..+.+..++|-+..++-+.+|||+|. ...+|.+-+ . +. ..-+.|-|+.++
T Consensus 132 sN~gYsyAKr~idv~n~aY~~qhg~~~tsviPtNvfGphDNfnpe~sHVlPali~r~h~ak~~gtd~~~VwGsG~PlRqF 211 (315)
T KOG1431|consen 132 SNFGYSYAKRMIDVQNQAYRQQHGRDYTSVIPTNVFGPHDNFNPENSHVLPALIHRFHEAKRNGTDELTVWGSGSPLRQF 211 (315)
T ss_pred CchHHHHHHHHHHHHHHHHHHHhCCceeeeccccccCCCCCCCcccccchHHHHHHHHHHHhcCCceEEEecCCChHHHH
Confidence 343 455552222234778889999999998899999985 244553321 1 11 122347899998
Q ss_pred ccccccchhHHHHHH-Hhh-HHH-HHHhcCCcchHHHHHHHHHHHHHHHcCCCCCcEEEEEEeecCCCCCCCCeEEEEeE
Q 019990 214 VADDNWLNTEFITTV-QQR-GAA-IIKARKLSSALSAASSACDHIRDWVLGTPKGTWVSMGVYSDGSYGIPEGLIYSFPV 290 (332)
Q Consensus 214 ~~~~~~~~~~~~~~v-~~~-~~~-i~~~~g~~~~~~~a~a~~~~i~~~~~~~~~~~i~~~~v~~~g~yg~~~~~~~s~Pv 290 (332)
+... +..++.-.+ ++. +.| |+-.-|.+.--++ .-+++.+..++-. +|++.--...++|+|-= -.|.
T Consensus 212 iys~--DLA~l~i~vlr~Y~~vEpiils~ge~~EVtI-~e~aeaV~ea~~F--~G~l~~DttK~DGq~kK----tasn-- 280 (315)
T KOG1431|consen 212 IYSD--DLADLFIWVLREYEGVEPIILSVGESDEVTI-REAAEAVVEAVDF--TGKLVWDTTKSDGQFKK----TASN-- 280 (315)
T ss_pred hhHh--HHHHHHHHHHHhhcCccceEeccCccceeEH-HHHHHHHHHHhCC--CceEEeeccCCCCCccc----ccch--
Confidence 8754 223333322 221 111 1222222111111 3344555555553 36665555667777521 1110
Q ss_pred EEeCCeEEEecCCCCCHHHHHHHHHHHHHHHHHHHH
Q 019990 291 TCEKGEWSIVKGLKVDEFSRAKMDATAEELAEEKTL 326 (332)
Q Consensus 291 ~~~~G~~~~~~~~~l~~~E~~~l~~s~~~i~~~~~~ 326 (332)
.......+++.+++.|++ +.++.+..-++++.
T Consensus 281 ---sKL~sl~pd~~ft~l~~a-i~~t~~Wy~~Ny~q 312 (315)
T KOG1431|consen 281 ---SKLRSLLPDFKFTPLEQA-ISETVQWYLDNYEQ 312 (315)
T ss_pred ---HHHHHhCCCcccChHHHH-HHHHHHHHHHhHHh
Confidence 122334457788988764 56666665555544
|
|
| >PRK06523 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=98.16 E-value=5.2e-06 Score=74.33 Aligned_cols=149 Identities=15% Similarity=0.123 Sum_probs=85.2
Q ss_pred CcEEEEEcCCChhHHHHHHHHHhcccCCCCCCeEEEEEecccchhhhhhhHhhhhhhccCCccceEEeCCH-------HH
Q 019990 5 PLRVLVTGAAGQIGYALVPMIARGIMLGPDQPVILHMLDIEPAAEALNGVKMELIDAAFPLLKGVVATTDV-------VE 77 (332)
Q Consensus 5 ~~kI~VtGaaG~IGs~l~~~L~~~~~~~~~~~~~i~l~D~~~~~~~~~~~~~dl~~~~~~~~~~v~~~~~~-------~~ 77 (332)
.++|+||||+|.||++++..|++.|. +|++++++... ... ........|+....+. .+
T Consensus 9 ~k~vlItGas~gIG~~ia~~l~~~G~-------~v~~~~r~~~~-~~~-------~~~~~~~~D~~~~~~~~~~~~~~~~ 73 (260)
T PRK06523 9 GKRALVTGGTKGIGAATVARLLEAGA-------RVVTTARSRPD-DLP-------EGVEFVAADLTTAEGCAAVARAVLE 73 (260)
T ss_pred CCEEEEECCCCchhHHHHHHHHHCCC-------EEEEEeCChhh-hcC-------CceeEEecCCCCHHHHHHHHHHHHH
Confidence 47899999999999999999998875 78888875321 110 0000111233322222 22
Q ss_pred HhCCCcEEEEecCCCCCC-----CCCh---hHHHhhhHHHHHHH----HHHHHhhcCCCcEEEEEeCChhhHHHHHHHHC
Q 019990 78 ACKDVNIAVMVGGFPRKE-----GMER---KDVMSKNVSIYKAQ----ASALEKHAAPNCKVLVVANPANTNALILKEFA 145 (332)
Q Consensus 78 a~~~aDiVi~~ag~~~~~-----~~~~---~~~~~~N~~~~~~i----~~~i~~~~~~~~~viv~snp~~~~~~~~~~~~ 145 (332)
.+...|+|||.||..... ..+. ...+..|+.....+ ++.+++.. ..++|++|+....
T Consensus 74 ~~~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~--~g~ii~isS~~~~--------- 142 (260)
T PRK06523 74 RLGGVDILVHVLGGSSAPAGGFAALTDEEWQDELNLNLLAAVRLDRALLPGMIARG--SGVIIHVTSIQRR--------- 142 (260)
T ss_pred HcCCCCEEEECCcccccCCCCcccCCHHHHHHHHhHhhHHHHHHHHHHHHHHHhcC--CcEEEEEeccccc---------
Confidence 345689999999853211 1122 22455676655444 44444432 3466777654221
Q ss_pred CCCC-CCcEEEeecccHHHHHHHHHHHcCCCCCCeee
Q 019990 146 PSIP-AKNITCLTRLDHNRAMGQISERLKVHVSDVKN 181 (332)
Q Consensus 146 ~~~~-~~~i~~~t~l~~~r~~~~~a~~~~v~~~~v~~ 181 (332)
.+.+ ....|+.+|.....+...+++.++ +..|+.
T Consensus 143 ~~~~~~~~~Y~~sK~a~~~l~~~~a~~~~--~~gi~v 177 (260)
T PRK06523 143 LPLPESTTAYAAAKAALSTYSKSLSKEVA--PKGVRV 177 (260)
T ss_pred CCCCCCcchhHHHHHHHHHHHHHHHHHHh--hcCcEE
Confidence 1222 233577788777778777777654 345654
|
|
| >PLN00016 RNA-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=98.16 E-value=5.2e-06 Score=78.86 Aligned_cols=152 Identities=14% Similarity=0.161 Sum_probs=83.5
Q ss_pred CCcEEEEE----cCCChhHHHHHHHHHhcccCCCCCCeEEEEEecccch-hhhhh----hHhhhhhhccC-CccceEEeC
Q 019990 4 NPLRVLVT----GAAGQIGYALVPMIARGIMLGPDQPVILHMLDIEPAA-EALNG----VKMELIDAAFP-LLKGVVATT 73 (332)
Q Consensus 4 ~~~kI~Vt----GaaG~IGs~l~~~L~~~~~~~~~~~~~i~l~D~~~~~-~~~~~----~~~dl~~~~~~-~~~~v~~~~ 73 (332)
.++||+|| ||+||||++++..|++.|+ +|+++++.... ..+.. ...++...... ...|+ .
T Consensus 51 ~~~~VLVt~~~~GatG~iG~~lv~~L~~~G~-------~V~~l~R~~~~~~~~~~~~~~~~~~l~~~~v~~v~~D~---~ 120 (378)
T PLN00016 51 EKKKVLIVNTNSGGHAFIGFYLAKELVKAGH-------EVTLFTRGKEPSQKMKKEPFSRFSELSSAGVKTVWGDP---A 120 (378)
T ss_pred ccceEEEEeccCCCceeEhHHHHHHHHHCCC-------EEEEEecCCcchhhhccCchhhhhHhhhcCceEEEecH---H
Confidence 45789999 9999999999999999886 89988875421 00000 00011110000 01121 1
Q ss_pred CHHHHh--CCCcEEEEecCCCCCCCCChhHHHhhhHHHHHHHHHHHHhhcCCCcEEEEEeCChhhHHHHHHHHCC--CCC
Q 019990 74 DVVEAC--KDVNIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEKHAAPNCKVLVVANPANTNALILKEFAP--SIP 149 (332)
Q Consensus 74 ~~~~a~--~~aDiVi~~ag~~~~~~~~~~~~~~~N~~~~~~i~~~i~~~~~~~~~viv~snp~~~~~~~~~~~~~--~~~ 149 (332)
++.+.+ .++|+|||+++. +...++.+++++++.+ .. ++|++|+. .+ |--....+ .-.
T Consensus 121 d~~~~~~~~~~d~Vi~~~~~--------------~~~~~~~ll~aa~~~g-vk-r~V~~SS~-~v--yg~~~~~p~~E~~ 181 (378)
T PLN00016 121 DVKSKVAGAGFDVVYDNNGK--------------DLDEVEPVADWAKSPG-LK-QFLFCSSA-GV--YKKSDEPPHVEGD 181 (378)
T ss_pred HHHhhhccCCccEEEeCCCC--------------CHHHHHHHHHHHHHcC-CC-EEEEEccH-hh--cCCCCCCCCCCCC
Confidence 233333 479999998642 1234567888888764 22 56666642 21 10000000 000
Q ss_pred CCcEEEeecccHHHHHHHHHHHcCCCCCCeeeeEEEecCC
Q 019990 150 AKNITCLTRLDHNRAMGQISERLKVHVSDVKNVIIWGNHS 189 (332)
Q Consensus 150 ~~~i~~~t~l~~~r~~~~~a~~~~v~~~~v~~~~V~G~hg 189 (332)
+..... ++...+++ .+..+++...+|+.++||+..
T Consensus 182 ~~~p~~-sK~~~E~~----l~~~~l~~~ilRp~~vyG~~~ 216 (378)
T PLN00016 182 AVKPKA-GHLEVEAY----LQKLGVNWTSFRPQYIYGPGN 216 (378)
T ss_pred cCCCcc-hHHHHHHH----HHHcCCCeEEEeceeEECCCC
Confidence 001111 45544443 345689999999999999854
|
|
| >PRK06484 short chain dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=98.16 E-value=1.5e-05 Score=78.78 Aligned_cols=157 Identities=18% Similarity=0.196 Sum_probs=94.2
Q ss_pred CcEEEEEcCCChhHHHHHHHHHhcccCCCCCCeEEEEEecccchhhhhhhHhhhhhhccCCccceEEeCCHHHHh-----
Q 019990 5 PLRVLVTGAAGQIGYALVPMIARGIMLGPDQPVILHMLDIEPAAEALNGVKMELIDAAFPLLKGVVATTDVVEAC----- 79 (332)
Q Consensus 5 ~~kI~VtGaaG~IGs~l~~~L~~~~~~~~~~~~~i~l~D~~~~~~~~~~~~~dl~~~~~~~~~~v~~~~~~~~a~----- 79 (332)
.++++||||+|.||.+++..|++.|. +|++.+++. +.+......+.........|+....++.+.+
T Consensus 269 ~k~~lItGas~gIG~~~a~~l~~~G~-------~V~~~~r~~--~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~ 339 (520)
T PRK06484 269 PRVVAITGGARGIGRAVADRFAAAGD-------RLLIIDRDA--EGAKKLAEALGDEHLSVQADITDEAAVESAFAQIQA 339 (520)
T ss_pred CCEEEEECCCcHHHHHHHHHHHHCCC-------EEEEEeCCH--HHHHHHHHHhCCceeEEEccCCCHHHHHHHHHHHHH
Confidence 47899999999999999999999885 789998753 2232222222110011123444333333322
Q ss_pred --CCCcEEEEecCCCC--CC--CCCh---hHHHhhhHHHHHHHHHHHHhhcCCCcEEEEEeCChhhHHHHHHHHCCCCCC
Q 019990 80 --KDVNIAVMVGGFPR--KE--GMER---KDVMSKNVSIYKAQASALEKHAAPNCKVLVVANPANTNALILKEFAPSIPA 150 (332)
Q Consensus 80 --~~aDiVi~~ag~~~--~~--~~~~---~~~~~~N~~~~~~i~~~i~~~~~~~~~viv~snp~~~~~~~~~~~~~~~~~ 150 (332)
...|++||.||... .+ ..+. ...+..|+.....+.+.+..+-...+.+|++|+.... .+.+.
T Consensus 340 ~~g~id~li~nAg~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~g~iv~isS~~~~---------~~~~~ 410 (520)
T PRK06484 340 RWGRLDVLVNNAGIAEVFKPSLEQSAEDFTRVYDVNLSGAFACARAAARLMSQGGVIVNLGSIASL---------LALPP 410 (520)
T ss_pred HcCCCCEEEECCCCcCCCCChhhCCHHHHHHHHHhCcHHHHHHHHHHHHHhccCCEEEEECchhhc---------CCCCC
Confidence 35799999998742 11 1222 2356778777766666655542234577777764321 12333
Q ss_pred CcEEEeecccHHHHHHHHHHHcCCCCCCeee
Q 019990 151 KNITCLTRLDHNRAMGQISERLKVHVSDVKN 181 (332)
Q Consensus 151 ~~i~~~t~l~~~r~~~~~a~~~~v~~~~v~~ 181 (332)
...|+.+|.....+.+.+++.+. +..|+.
T Consensus 411 ~~~Y~asKaal~~l~~~la~e~~--~~gI~v 439 (520)
T PRK06484 411 RNAYCASKAAVTMLSRSLACEWA--PAGIRV 439 (520)
T ss_pred CchhHHHHHHHHHHHHHHHHHhh--hhCeEE
Confidence 44678888888888888887764 345664
|
|
| >PRK08251 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=98.16 E-value=4.2e-05 Score=67.86 Aligned_cols=149 Identities=15% Similarity=0.175 Sum_probs=82.9
Q ss_pred CcEEEEEcCCChhHHHHHHHHHhcccCCCCCCeEEEEEecccchhhhhhhHhhhhhh----cc-CCccceEEeCCHHH--
Q 019990 5 PLRVLVTGAAGQIGYALVPMIARGIMLGPDQPVILHMLDIEPAAEALNGVKMELIDA----AF-PLLKGVVATTDVVE-- 77 (332)
Q Consensus 5 ~~kI~VtGaaG~IGs~l~~~L~~~~~~~~~~~~~i~l~D~~~~~~~~~~~~~dl~~~----~~-~~~~~v~~~~~~~~-- 77 (332)
+++++||||+|+||.+++..|++.+. ++.+.+++. +.+.....++... .. ....|++...++.+
T Consensus 2 ~k~vlItGas~giG~~la~~l~~~g~-------~v~~~~r~~--~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~ 72 (248)
T PRK08251 2 RQKILITGASSGLGAGMAREFAAKGR-------DLALCARRT--DRLEELKAELLARYPGIKVAVAALDVNDHDQVFEVF 72 (248)
T ss_pred CCEEEEECCCCHHHHHHHHHHHHcCC-------EEEEEeCCH--HHHHHHHHHHHhhCCCceEEEEEcCCCCHHHHHHHH
Confidence 35799999999999999999998874 788888754 2233222233211 00 11124433323222
Q ss_pred -----HhCCCcEEEEecCCCCCCC---CCh---hHHHhhhHHHHHHHHHHHH----hhcCCCcEEEEEeCChhhHHHHHH
Q 019990 78 -----ACKDVNIAVMVGGFPRKEG---MER---KDVMSKNVSIYKAQASALE----KHAAPNCKVLVVANPANTNALILK 142 (332)
Q Consensus 78 -----a~~~aDiVi~~ag~~~~~~---~~~---~~~~~~N~~~~~~i~~~i~----~~~~~~~~viv~snp~~~~~~~~~ 142 (332)
.+...|+||+.||...... .+. ...++.|......+.+.+. +.. ..+++++|+-...
T Consensus 73 ~~~~~~~~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~--~~~iv~~sS~~~~------ 144 (248)
T PRK08251 73 AEFRDELGGLDRVIVNAGIGKGARLGTGKFWANKATAETNFVAALAQCEAAMEIFREQG--SGHLVLISSVSAV------ 144 (248)
T ss_pred HHHHHHcCCCCEEEECCCcCCCCCcCcCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcC--CCeEEEEeccccc------
Confidence 2346899999998743211 111 2345667766655555543 332 3356666642211
Q ss_pred HHCCCCCC-CcEEEeecccHHHHHHHHHHHcC
Q 019990 143 EFAPSIPA-KNITCLTRLDHNRAMGQISERLK 173 (332)
Q Consensus 143 ~~~~~~~~-~~i~~~t~l~~~r~~~~~a~~~~ 173 (332)
.+.+. ...|+.++.....+...++..+.
T Consensus 145 ---~~~~~~~~~Y~~sK~a~~~~~~~l~~~~~ 173 (248)
T PRK08251 145 ---RGLPGVKAAYAASKAGVASLGEGLRAELA 173 (248)
T ss_pred ---cCCCCCcccHHHHHHHHHHHHHHHHHHhc
Confidence 12222 23567777666666666666554
|
|
| >PRK12938 acetyacetyl-CoA reductase; Provisional | Back alignment and domain information |
|---|
Probab=98.15 E-value=3.4e-05 Score=68.36 Aligned_cols=157 Identities=11% Similarity=0.051 Sum_probs=82.2
Q ss_pred CcEEEEEcCCChhHHHHHHHHHhcccCCCCCCeEEEEEecccchhhhhhhHhhhhhhccC---CccceEEeCCHHHH---
Q 019990 5 PLRVLVTGAAGQIGYALVPMIARGIMLGPDQPVILHMLDIEPAAEALNGVKMELIDAAFP---LLKGVVATTDVVEA--- 78 (332)
Q Consensus 5 ~~kI~VtGaaG~IGs~l~~~L~~~~~~~~~~~~~i~l~D~~~~~~~~~~~~~dl~~~~~~---~~~~v~~~~~~~~a--- 78 (332)
.+.++||||+|+||++++..|++.|. ++++...... ........++...... ...|+....++.++
T Consensus 3 ~k~~lVtG~s~giG~~~a~~l~~~G~-------~vv~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~ 74 (246)
T PRK12938 3 QRIAYVTGGMGGIGTSICQRLHKDGF-------KVVAGCGPNS-PRRVKWLEDQKALGFDFIASEGNVGDWDSTKAAFDK 74 (246)
T ss_pred CCEEEEECCCChHHHHHHHHHHHcCC-------EEEEEcCCCh-HHHHHHHHHHHhcCCcEEEEEcCCCCHHHHHHHHHH
Confidence 45789999999999999999999875 6666432211 1111122222211110 11344333333333
Q ss_pred ----hCCCcEEEEecCCCCCC---CCCh---hHHHhhhHHHHHHHHHHHHhhc--CCCcEEEEEeCChhhHHHHHHHHCC
Q 019990 79 ----CKDVNIAVMVGGFPRKE---GMER---KDVMSKNVSIYKAQASALEKHA--APNCKVLVVANPANTNALILKEFAP 146 (332)
Q Consensus 79 ----~~~aDiVi~~ag~~~~~---~~~~---~~~~~~N~~~~~~i~~~i~~~~--~~~~~viv~snp~~~~~~~~~~~~~ 146 (332)
+...|+|||+||..... ..+. ...+..|......+.+.+.... ....+++++|+.... .
T Consensus 75 ~~~~~~~id~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~iv~isS~~~~---------~ 145 (246)
T PRK12938 75 VKAEVGEIDVLVNNAGITRDVVFRKMTREDWTAVIDTNLTSLFNVTKQVIDGMVERGWGRIINISSVNGQ---------K 145 (246)
T ss_pred HHHHhCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCCeEEEEEechhcc---------C
Confidence 24689999999874321 1122 2345677766444444333221 123466776653211 1
Q ss_pred CCCCCcEEEeecccHHHHHHHHHHHcCCCCCCee
Q 019990 147 SIPAKNITCLTRLDHNRAMGQISERLKVHVSDVK 180 (332)
Q Consensus 147 ~~~~~~i~~~t~l~~~r~~~~~a~~~~v~~~~v~ 180 (332)
+.+....|+.++.....+...+++.++ +..++
T Consensus 146 ~~~~~~~y~~sK~a~~~~~~~l~~~~~--~~gi~ 177 (246)
T PRK12938 146 GQFGQTNYSTAKAGIHGFTMSLAQEVA--TKGVT 177 (246)
T ss_pred CCCCChhHHHHHHHHHHHHHHHHHHhh--hhCeE
Confidence 122223456677666667777777654 34454
|
|
| >PRK06198 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=98.15 E-value=2e-05 Score=70.44 Aligned_cols=152 Identities=13% Similarity=0.067 Sum_probs=83.9
Q ss_pred CCcEEEEEcCCChhHHHHHHHHHhcccCCCCCCeE-EEEEecccchhhhhhhHhhhhhhc--c-CCccceEEeCCHHHHh
Q 019990 4 NPLRVLVTGAAGQIGYALVPMIARGIMLGPDQPVI-LHMLDIEPAAEALNGVKMELIDAA--F-PLLKGVVATTDVVEAC 79 (332)
Q Consensus 4 ~~~kI~VtGaaG~IGs~l~~~L~~~~~~~~~~~~~-i~l~D~~~~~~~~~~~~~dl~~~~--~-~~~~~v~~~~~~~~a~ 79 (332)
+.++|+||||+|+||++++..|.+.+. + |.+++++. +.......++.... . ....|+....++.+.+
T Consensus 5 ~~k~vlItGa~g~iG~~la~~l~~~G~-------~~V~~~~r~~--~~~~~~~~~l~~~~~~~~~~~~D~~~~~~~~~~~ 75 (260)
T PRK06198 5 DGKVALVTGGTQGLGAAIARAFAERGA-------AGLVICGRNA--EKGEAQAAELEALGAKAVFVQADLSDVEDCRRVV 75 (260)
T ss_pred CCcEEEEeCCCchHHHHHHHHHHHCCC-------CeEEEEcCCH--HHHHHHHHHHHhcCCeEEEEEccCCCHHHHHHHH
Confidence 457899999999999999999998875 5 88898753 22222222221111 0 0112333322232322
Q ss_pred -------CCCcEEEEecCCCCCC---CCChh---HHHhhhHHHHHHHHHHHHhhc---CCCcEEEEEeCChhhHHHHHHH
Q 019990 80 -------KDVNIAVMVGGFPRKE---GMERK---DVMSKNVSIYKAQASALEKHA---APNCKVLVVANPANTNALILKE 143 (332)
Q Consensus 80 -------~~aDiVi~~ag~~~~~---~~~~~---~~~~~N~~~~~~i~~~i~~~~---~~~~~viv~snp~~~~~~~~~~ 143 (332)
.+.|++||++|..... ..+.. ..+..|......+.+.+.+.. .....++++|+....
T Consensus 76 ~~~~~~~g~id~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~g~iv~~ss~~~~------- 148 (260)
T PRK06198 76 AAADEAFGRLDALVNAAGLTDRGTILDTSPELFDRHFAVNVRAPFFLMQEAIKLMRRRKAEGTIVNIGSMSAH------- 148 (260)
T ss_pred HHHHHHhCCCCEEEECCCcCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCCCEEEEECCcccc-------
Confidence 3689999999874321 12222 235667766666555553321 112456666643211
Q ss_pred HCCCCCCCcEEEeecccHHHHHHHHHHHcC
Q 019990 144 FAPSIPAKNITCLTRLDHNRAMGQISERLK 173 (332)
Q Consensus 144 ~~~~~~~~~i~~~t~l~~~r~~~~~a~~~~ 173 (332)
.+.+....|+.++...+.+...+++.+.
T Consensus 149 --~~~~~~~~Y~~sK~a~~~~~~~~a~e~~ 176 (260)
T PRK06198 149 --GGQPFLAAYCASKGALATLTRNAAYALL 176 (260)
T ss_pred --cCCCCcchhHHHHHHHHHHHHHHHHHhc
Confidence 1122223567777766677666666554
|
|
| >PRK08324 short chain dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=98.14 E-value=1.2e-05 Score=82.11 Aligned_cols=151 Identities=19% Similarity=0.138 Sum_probs=85.7
Q ss_pred CcEEEEEcCCChhHHHHHHHHHhcccCCCCCCeEEEEEecccchhhhhhhHhhhhhh-c-cCCccceEEeCCHHHHh---
Q 019990 5 PLRVLVTGAAGQIGYALVPMIARGIMLGPDQPVILHMLDIEPAAEALNGVKMELIDA-A-FPLLKGVVATTDVVEAC--- 79 (332)
Q Consensus 5 ~~kI~VtGaaG~IGs~l~~~L~~~~~~~~~~~~~i~l~D~~~~~~~~~~~~~dl~~~-~-~~~~~~v~~~~~~~~a~--- 79 (332)
.++|+||||+|+||++++..|++.|. +|+++|++. +.+......+... . .....|++...++.+++
T Consensus 422 gk~vLVTGasggIG~~la~~L~~~Ga-------~Vvl~~r~~--~~~~~~~~~l~~~~~v~~v~~Dvtd~~~v~~~~~~~ 492 (681)
T PRK08324 422 GKVALVTGAAGGIGKATAKRLAAEGA-------CVVLADLDE--EAAEAAAAELGGPDRALGVACDVTDEAAVQAAFEEA 492 (681)
T ss_pred CCEEEEecCCCHHHHHHHHHHHHCcC-------EEEEEeCCH--HHHHHHHHHHhccCcEEEEEecCCCHHHHHHHHHHH
Confidence 36899999999999999999998875 799999864 2222222222210 0 01112333333333333
Q ss_pred ----CCCcEEEEecCCCCCC---CCChh---HHHhhhHHHHHHHHHHHHhhc---CCCcEEEEEeCChhhHHHHHHHHCC
Q 019990 80 ----KDVNIAVMVGGFPRKE---GMERK---DVMSKNVSIYKAQASALEKHA---APNCKVLVVANPANTNALILKEFAP 146 (332)
Q Consensus 80 ----~~aDiVi~~ag~~~~~---~~~~~---~~~~~N~~~~~~i~~~i~~~~---~~~~~viv~snp~~~~~~~~~~~~~ 146 (332)
.+.|+||++||..... ..+.. ..+..|......+++.+.+.- ...++++++|+.... .
T Consensus 493 ~~~~g~iDvvI~~AG~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~l~~~~~~g~iV~vsS~~~~---------~ 563 (681)
T PRK08324 493 ALAFGGVDIVVSNAGIAISGPIEETSDEDWRRSFDVNATGHFLVAREAVRIMKAQGLGGSIVFIASKNAV---------N 563 (681)
T ss_pred HHHcCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCcEEEEECCcccc---------C
Confidence 3689999999864321 11222 245667776666655554321 112566766653211 1
Q ss_pred CCCCCcEEEeecccHHHHHHHHHHHcC
Q 019990 147 SIPAKNITCLTRLDHNRAMGQISERLK 173 (332)
Q Consensus 147 ~~~~~~i~~~t~l~~~r~~~~~a~~~~ 173 (332)
+.+....|+.+|.....+...++..++
T Consensus 564 ~~~~~~~Y~asKaa~~~l~~~la~e~~ 590 (681)
T PRK08324 564 PGPNFGAYGAAKAAELHLVRQLALELG 590 (681)
T ss_pred CCCCcHHHHHHHHHHHHHHHHHHHHhc
Confidence 112222567777777777777777664
|
|
| >PRK06114 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=98.14 E-value=2.7e-05 Score=69.51 Aligned_cols=159 Identities=14% Similarity=0.136 Sum_probs=86.9
Q ss_pred CCcEEEEEcCCChhHHHHHHHHHhcccCCCCCCeEEEEEecccchhhhhhhHhhhhhhc--c-CCccceEEeCCHHHHh-
Q 019990 4 NPLRVLVTGAAGQIGYALVPMIARGIMLGPDQPVILHMLDIEPAAEALNGVKMELIDAA--F-PLLKGVVATTDVVEAC- 79 (332)
Q Consensus 4 ~~~kI~VtGaaG~IGs~l~~~L~~~~~~~~~~~~~i~l~D~~~~~~~~~~~~~dl~~~~--~-~~~~~v~~~~~~~~a~- 79 (332)
+.++++||||+|+||++++..|++.|. ++.+.|++.. +.+.....++.+.. . .+..|+....++.+++
T Consensus 7 ~~k~~lVtG~s~gIG~~ia~~l~~~G~-------~v~~~~r~~~-~~~~~~~~~l~~~~~~~~~~~~D~~~~~~i~~~~~ 78 (254)
T PRK06114 7 DGQVAFVTGAGSGIGQRIAIGLAQAGA-------DVALFDLRTD-DGLAETAEHIEAAGRRAIQIAADVTSKADLRAAVA 78 (254)
T ss_pred CCCEEEEECCCchHHHHHHHHHHHCCC-------EEEEEeCCcc-hHHHHHHHHHHhcCCceEEEEcCCCCHHHHHHHHH
Confidence 457899999999999999999999885 7888887532 12222222332211 0 1123443333333332
Q ss_pred ------CCCcEEEEecCCCCCC---CCCh---hHHHhhhHHHHHHHHHHHHhhc--CCCcEEEEEeCChhhHHHHHHHHC
Q 019990 80 ------KDVNIAVMVGGFPRKE---GMER---KDVMSKNVSIYKAQASALEKHA--APNCKVLVVANPANTNALILKEFA 145 (332)
Q Consensus 80 ------~~aDiVi~~ag~~~~~---~~~~---~~~~~~N~~~~~~i~~~i~~~~--~~~~~viv~snp~~~~~~~~~~~~ 145 (332)
...|++|+.||..... ..+. ...+..|+.....+.+++..+. .....++++|+.....
T Consensus 79 ~~~~~~g~id~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~iv~isS~~~~~-------- 150 (254)
T PRK06114 79 RTEAELGALTLAVNAAGIANANPAEEMEEEQWQTVMDINLTGVFLSCQAEARAMLENGGGSIVNIASMSGII-------- 150 (254)
T ss_pred HHHHHcCCCCEEEECCCCCCCCChHhCCHHHHHHHHhhcchhhHHHHHHHHHHHHhcCCcEEEEECchhhcC--------
Confidence 3469999999874321 1122 2345667666544444433221 1234666666532110
Q ss_pred CCCC--CCcEEEeecccHHHHHHHHHHHcCCCCCCeee
Q 019990 146 PSIP--AKNITCLTRLDHNRAMGQISERLKVHVSDVKN 181 (332)
Q Consensus 146 ~~~~--~~~i~~~t~l~~~r~~~~~a~~~~v~~~~v~~ 181 (332)
+.+ ....|+.++.....+.+.+++.+. +..++.
T Consensus 151 -~~~~~~~~~Y~~sKaa~~~l~~~la~e~~--~~gi~v 185 (254)
T PRK06114 151 -VNRGLLQAHYNASKAGVIHLSKSLAMEWV--GRGIRV 185 (254)
T ss_pred -CCCCCCcchHHHHHHHHHHHHHHHHHHHh--hcCeEE
Confidence 111 123466677666677777777654 345664
|
|
| >PRK07904 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=98.14 E-value=4.2e-05 Score=68.46 Aligned_cols=150 Identities=12% Similarity=0.153 Sum_probs=82.2
Q ss_pred CCcEEEEEcCCChhHHHHHHHHHhcc-cCCCCCCeEEEEEecccchhhhhhhHhhhhhhc---cC-CccceEEeCCHHHH
Q 019990 4 NPLRVLVTGAAGQIGYALVPMIARGI-MLGPDQPVILHMLDIEPAAEALNGVKMELIDAA---FP-LLKGVVATTDVVEA 78 (332)
Q Consensus 4 ~~~kI~VtGaaG~IGs~l~~~L~~~~-~~~~~~~~~i~l~D~~~~~~~~~~~~~dl~~~~---~~-~~~~v~~~~~~~~a 78 (332)
+.++|+||||+|.||.+++..|++.+ . .|.+++++... .+.....++.... .. ...|+....+..+.
T Consensus 7 ~~~~vlItGas~giG~~la~~l~~~gg~-------~V~~~~r~~~~-~~~~~~~~l~~~~~~~v~~~~~D~~~~~~~~~~ 78 (253)
T PRK07904 7 NPQTILLLGGTSEIGLAICERYLKNAPA-------RVVLAALPDDP-RRDAAVAQMKAAGASSVEVIDFDALDTDSHPKV 78 (253)
T ss_pred CCcEEEEEcCCcHHHHHHHHHHHhcCCC-------eEEEEeCCcch-hHHHHHHHHHhcCCCceEEEEecCCChHHHHHH
Confidence 45789999999999999999998864 4 78888876421 1332333332211 11 11244333332222
Q ss_pred h------CCCcEEEEecCCCCCCCC---Chh---HHHhhhHHHH----HHHHHHHHhhcCCCcEEEEEeCChhhHHHHHH
Q 019990 79 C------KDVNIAVMVGGFPRKEGM---ERK---DVMSKNVSIY----KAQASALEKHAAPNCKVLVVANPANTNALILK 142 (332)
Q Consensus 79 ~------~~aDiVi~~ag~~~~~~~---~~~---~~~~~N~~~~----~~i~~~i~~~~~~~~~viv~snp~~~~~~~~~ 142 (332)
+ .+.|++|+.+|....... +.. +.+..|.... +.+.+.+.+.. ..+++++|+-...
T Consensus 79 ~~~~~~~g~id~li~~ag~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~l~~~~~~~~--~~~iv~isS~~g~------ 150 (253)
T PRK07904 79 IDAAFAGGDVDVAIVAFGLLGDAEELWQNQRKAVQIAEINYTAAVSVGVLLGEKMRAQG--FGQIIAMSSVAGE------ 150 (253)
T ss_pred HHHHHhcCCCCEEEEeeecCCchhhcccCHHHHHHHHHHHhHhHHHHHHHHHHHHHhcC--CceEEEEechhhc------
Confidence 2 268999998887432111 111 2356676433 45666666653 3566777653210
Q ss_pred HHCCCCCCCcEEEeecccHHHHHHHHHHHc
Q 019990 143 EFAPSIPAKNITCLTRLDHNRAMGQISERL 172 (332)
Q Consensus 143 ~~~~~~~~~~i~~~t~l~~~r~~~~~a~~~ 172 (332)
.+.+....|+.++.....+...++..+
T Consensus 151 ---~~~~~~~~Y~~sKaa~~~~~~~l~~el 177 (253)
T PRK07904 151 ---RVRRSNFVYGSTKAGLDGFYLGLGEAL 177 (253)
T ss_pred ---CCCCCCcchHHHHHHHHHHHHHHHHHH
Confidence 111222346777766655555555443
|
|
| >PRK06947 glucose-1-dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=98.13 E-value=2.2e-05 Score=69.62 Aligned_cols=157 Identities=17% Similarity=0.087 Sum_probs=83.5
Q ss_pred CcEEEEEcCCChhHHHHHHHHHhcccCCCCCCeEEEEEecccchhhhhhhHhhhhhhc--c-CCccceEEeCCHHHH---
Q 019990 5 PLRVLVTGAAGQIGYALVPMIARGIMLGPDQPVILHMLDIEPAAEALNGVKMELIDAA--F-PLLKGVVATTDVVEA--- 78 (332)
Q Consensus 5 ~~kI~VtGaaG~IGs~l~~~L~~~~~~~~~~~~~i~l~D~~~~~~~~~~~~~dl~~~~--~-~~~~~v~~~~~~~~a--- 78 (332)
+++|+||||+|+||++++..|++.+. ++++.+.+. .+.+.....++.... . ....|+....++.++
T Consensus 2 ~k~ilItGas~giG~~la~~l~~~g~-------~v~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~ 73 (248)
T PRK06947 2 RKVVLITGASRGIGRATAVLAAARGW-------SVGINYARD-AAAAEETADAVRAAGGRACVVAGDVANEADVIAMFDA 73 (248)
T ss_pred CcEEEEeCCCCcHHHHHHHHHHHCCC-------EEEEEeCCC-HHHHHHHHHHHHhcCCcEEEEEeccCCHHHHHHHHHH
Confidence 45899999999999999999998875 666654322 122322222232110 0 111233333333222
Q ss_pred ----hCCCcEEEEecCCCCC--C--CCChh---HHHhhhHHHHHHHHHHHHhhc--C---CCcEEEEEeCChhhHHHHHH
Q 019990 79 ----CKDVNIAVMVGGFPRK--E--GMERK---DVMSKNVSIYKAQASALEKHA--A---PNCKVLVVANPANTNALILK 142 (332)
Q Consensus 79 ----~~~aDiVi~~ag~~~~--~--~~~~~---~~~~~N~~~~~~i~~~i~~~~--~---~~~~viv~snp~~~~~~~~~ 142 (332)
+...|++||.||.... + ..+.. ..+..|......+++.+.+.. . +..++|++++....
T Consensus 74 ~~~~~~~id~li~~ag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~~~~ii~~sS~~~~------ 147 (248)
T PRK06947 74 VQSAFGRLDALVNNAGIVAPSMPLADMDAARLRRMFDTNVLGAYLCAREAARRLSTDRGGRGGAIVNVSSIASR------ 147 (248)
T ss_pred HHHhcCCCCEEEECCccCCCCCChhhCCHHHHHHHHHhccHHHHHHHHHHHHHHHhcCCCCCcEEEEECchhhc------
Confidence 2368999999986321 1 11222 235667665545543332221 0 13456766653221
Q ss_pred HHCCCCCCC-cEEEeecccHHHHHHHHHHHcCCCCCCee
Q 019990 143 EFAPSIPAK-NITCLTRLDHNRAMGQISERLKVHVSDVK 180 (332)
Q Consensus 143 ~~~~~~~~~-~i~~~t~l~~~r~~~~~a~~~~v~~~~v~ 180 (332)
.+.+.. ..|+.++.....+...+++.+. +..++
T Consensus 148 ---~~~~~~~~~Y~~sK~~~~~~~~~la~~~~--~~~i~ 181 (248)
T PRK06947 148 ---LGSPNEYVDYAGSKGAVDTLTLGLAKELG--PHGVR 181 (248)
T ss_pred ---CCCCCCCcccHhhHHHHHHHHHHHHHHhh--hhCcE
Confidence 111211 2478888877777777877764 33454
|
|
| >KOG0747 consensus Putative NAD+-dependent epimerases [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.11 E-value=2.4e-06 Score=75.59 Aligned_cols=182 Identities=13% Similarity=0.145 Sum_probs=113.8
Q ss_pred CCcEEEEEcCCChhHHHHHHHHHhcccCCCCCCeEEEEEecccchhhhhhhHhhhhhhc-cC---C-ccceEEeCCHHHH
Q 019990 4 NPLRVLVTGAAGQIGYALVPMIARGIMLGPDQPVILHMLDIEPAAEALNGVKMELIDAA-FP---L-LKGVVATTDVVEA 78 (332)
Q Consensus 4 ~~~kI~VtGaaG~IGs~l~~~L~~~~~~~~~~~~~i~l~D~~~~~~~~~~~~~dl~~~~-~~---~-~~~v~~~~~~~~a 78 (332)
.+++++||||+|||||+.+..+...-- ......+|.-. ...+ ...+.... .+ + ..++.......-.
T Consensus 5 ~~~~vlItgg~gfi~Sn~~~~~~~~~p-----~~~~v~idkL~---~~s~-~~~l~~~~n~p~ykfv~~di~~~~~~~~~ 75 (331)
T KOG0747|consen 5 KEKNVLITGGAGFIGSNFINYLVDKYP-----DYKFVNLDKLD---YCSN-LKNLEPVRNSPNYKFVEGDIADADLVLYL 75 (331)
T ss_pred ccceEEEecCcCcchhhhhhhcccCCC-----CCcEEEEeecc---cccc-cchhhhhccCCCceEeeccccchHHHHhh
Confidence 347899999999999999998875421 12456666321 1111 11111110 11 1 1122111111111
Q ss_pred h--CCCcEEEEecCCCC---CCCCChhHHHhhhHHHHHHHHHHHHhhcCCCc-EEEEEeC-Ch--hhHH-HHHHHHCCCC
Q 019990 79 C--KDVNIAVMVGGFPR---KEGMERKDVMSKNVSIYKAQASALEKHAAPNC-KVLVVAN-PA--NTNA-LILKEFAPSI 148 (332)
Q Consensus 79 ~--~~aDiVi~~ag~~~---~~~~~~~~~~~~N~~~~~~i~~~i~~~~~~~~-~viv~sn-p~--~~~~-~~~~~~~~~~ 148 (332)
+ ...|.|+|.|.... .. .++.+..+.|+-.+..++++++.++ +. ++|.+|. .| |..- ....+ ++.+
T Consensus 76 ~~~~~id~vihfaa~t~vd~s~-~~~~~~~~nnil~t~~Lle~~~~sg--~i~~fvhvSTdeVYGds~~~~~~~E-~s~~ 151 (331)
T KOG0747|consen 76 FETEEIDTVIHFAAQTHVDRSF-GDSFEFTKNNILSTHVLLEAVRVSG--NIRRFVHVSTDEVYGDSDEDAVVGE-ASLL 151 (331)
T ss_pred hccCchhhhhhhHhhhhhhhhc-CchHHHhcCCchhhhhHHHHHHhcc--CeeEEEEecccceecCccccccccc-cccC
Confidence 1 26799999886432 22 2345567889999999999999886 44 5666663 22 1111 11123 2567
Q ss_pred CCCcEEEeecccHHHHHHHHHHHcCCCCCCeeeeEEEecCC--CceeecccC
Q 019990 149 PAKNITCLTRLDHNRAMGQISERLKVHVSDVKNVIIWGNHS--STQYPDVNH 198 (332)
Q Consensus 149 ~~~~i~~~t~l~~~r~~~~~a~~~~v~~~~v~~~~V~G~hg--~~~v~~~s~ 198 (332)
+|.+.++.++...+.+-..+.+.+|++...+|.-+|||++. ...+|-|-.
T Consensus 152 nPtnpyAasKaAaE~~v~Sy~~sy~lpvv~~R~nnVYGP~q~~~klipkFi~ 203 (331)
T KOG0747|consen 152 NPTNPYAASKAAAEMLVRSYGRSYGLPVVTTRMNNVYGPNQYPEKLIPKFIK 203 (331)
T ss_pred CCCCchHHHHHHHHHHHHHHhhccCCcEEEEeccCccCCCcChHHHhHHHHH
Confidence 78889999999999999999999999999999999999976 466775544
|
|
| >PRK07066 3-hydroxybutyryl-CoA dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=98.11 E-value=6.2e-05 Score=69.60 Aligned_cols=106 Identities=12% Similarity=0.151 Sum_probs=68.1
Q ss_pred CcEEEEEcCCChhHHHHHHHHHhcccCCCCCCeEEEEEecccchhhhhhhHhh----hhhh---cc---CCccceEEeCC
Q 019990 5 PLRVLVTGAAGQIGYALVPMIARGIMLGPDQPVILHMLDIEPAAEALNGVKME----LIDA---AF---PLLKGVVATTD 74 (332)
Q Consensus 5 ~~kI~VtGaaG~IGs~l~~~L~~~~~~~~~~~~~i~l~D~~~~~~~~~~~~~d----l~~~---~~---~~~~~v~~~~~ 74 (332)
.+||+|+| +|-+|+.++..++..|+ +|+++|.+.. .+...... +... .. .....++..++
T Consensus 7 i~~VaVIG-aG~MG~giA~~~a~aG~-------~V~l~D~~~~--~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~ 76 (321)
T PRK07066 7 IKTFAAIG-SGVIGSGWVARALAHGL-------DVVAWDPAPG--AEAALRANVANAWPALERQGLAPGASPARLRFVAT 76 (321)
T ss_pred CCEEEEEC-cCHHHHHHHHHHHhCCC-------eEEEEeCCHH--HHHHHHHHHHHHHHHHHHcCCChhhHHhhceecCC
Confidence 47899999 69999999999999886 8999998642 22111111 1110 00 01235566677
Q ss_pred HHHHhCCCcEEEEecCCCCCCCCChhHHHhhhHHHHHHHHHHHHhhcCCCcEEEEEeCChhh
Q 019990 75 VVEACKDVNIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEKHAAPNCKVLVVANPANT 136 (332)
Q Consensus 75 ~~~a~~~aDiVi~~ag~~~~~~~~~~~~~~~N~~~~~~i~~~i~~~~~~~~~viv~snp~~~ 136 (332)
+.+++++||+|+-+. + + |.+.-+.+...+.++++|++ |+.||.+..
T Consensus 77 l~~av~~aDlViEav--p-----E-------~l~vK~~lf~~l~~~~~~~a--IlaSnTS~l 122 (321)
T PRK07066 77 IEACVADADFIQESA--P-----E-------REALKLELHERISRAAKPDA--IIASSTSGL 122 (321)
T ss_pred HHHHhcCCCEEEECC--c-----C-------CHHHHHHHHHHHHHhCCCCe--EEEECCCcc
Confidence 888899999999753 1 1 23334566677777775665 667765543
|
|
| >PRK07578 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=98.11 E-value=2.6e-05 Score=66.93 Aligned_cols=141 Identities=13% Similarity=0.126 Sum_probs=81.1
Q ss_pred cEEEEEcCCChhHHHHHHHHHhcccCCCCCCeEEEEEecccchhhhhhhHhhhhhhccCCccceEEeCCHHHH---hCCC
Q 019990 6 LRVLVTGAAGQIGYALVPMIARGIMLGPDQPVILHMLDIEPAAEALNGVKMELIDAAFPLLKGVVATTDVVEA---CKDV 82 (332)
Q Consensus 6 ~kI~VtGaaG~IGs~l~~~L~~~~~~~~~~~~~i~l~D~~~~~~~~~~~~~dl~~~~~~~~~~v~~~~~~~~a---~~~a 82 (332)
|+++||||+|.||.+++..|.+. . +|.+++++.. . ...|+ ....++.+. +...
T Consensus 1 ~~vlItGas~giG~~la~~l~~~-~-------~vi~~~r~~~--~---~~~D~-----------~~~~~~~~~~~~~~~i 56 (199)
T PRK07578 1 MKILVIGASGTIGRAVVAELSKR-H-------EVITAGRSSG--D---VQVDI-----------TDPASIRALFEKVGKV 56 (199)
T ss_pred CeEEEEcCCcHHHHHHHHHHHhc-C-------cEEEEecCCC--c---eEecC-----------CChHHHHHHHHhcCCC
Confidence 37999999999999999999876 3 6888876421 0 11122 211222222 3468
Q ss_pred cEEEEecCCCCC-C--CCChhH---HHhhhHHHHHHHHHHHHhhcCCCcEEEEEeCChhhHHHHHHHHCCCCCCCcEEEe
Q 019990 83 NIAVMVGGFPRK-E--GMERKD---VMSKNVSIYKAQASALEKHAAPNCKVLVVANPANTNALILKEFAPSIPAKNITCL 156 (332)
Q Consensus 83 DiVi~~ag~~~~-~--~~~~~~---~~~~N~~~~~~i~~~i~~~~~~~~~viv~snp~~~~~~~~~~~~~~~~~~~i~~~ 156 (332)
|++|+.||.... + ..+..+ .+..|+.....+.+.+..+-.+...++++|+.... .+.+....|+.
T Consensus 57 d~lv~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~g~iv~iss~~~~---------~~~~~~~~Y~~ 127 (199)
T PRK07578 57 DAVVSAAGKVHFAPLAEMTDEDFNVGLQSKLMGQVNLVLIGQHYLNDGGSFTLTSGILSD---------EPIPGGASAAT 127 (199)
T ss_pred CEEEECCCCCCCCchhhCCHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCeEEEEcccccC---------CCCCCchHHHH
Confidence 999999986421 1 122222 34567766666666665542233455655542210 12222234566
Q ss_pred ecccHHHHHHHHHHHcCCCCCCeeee
Q 019990 157 TRLDHNRAMGQISERLKVHVSDVKNV 182 (332)
Q Consensus 157 t~l~~~r~~~~~a~~~~v~~~~v~~~ 182 (332)
+|-....+...++..+ +..++..
T Consensus 128 sK~a~~~~~~~la~e~---~~gi~v~ 150 (199)
T PRK07578 128 VNGALEGFVKAAALEL---PRGIRIN 150 (199)
T ss_pred HHHHHHHHHHHHHHHc---cCCeEEE
Confidence 6766677777777776 3456643
|
|
| >PRK07832 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=98.10 E-value=3.8e-05 Score=69.35 Aligned_cols=156 Identities=13% Similarity=0.100 Sum_probs=86.2
Q ss_pred cEEEEEcCCChhHHHHHHHHHhcccCCCCCCeEEEEEecccchhhhhhhHhhhhhhcc---C-CccceEEeCCHH-----
Q 019990 6 LRVLVTGAAGQIGYALVPMIARGIMLGPDQPVILHMLDIEPAAEALNGVKMELIDAAF---P-LLKGVVATTDVV----- 76 (332)
Q Consensus 6 ~kI~VtGaaG~IGs~l~~~L~~~~~~~~~~~~~i~l~D~~~~~~~~~~~~~dl~~~~~---~-~~~~v~~~~~~~----- 76 (332)
++++||||+|+||.+++..|++.|. ++++++++. +.+.....++..... . ...|+....++.
T Consensus 1 k~vlItGas~giG~~la~~la~~G~-------~vv~~~r~~--~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~ 71 (272)
T PRK07832 1 KRCFVTGAASGIGRATALRLAAQGA-------ELFLTDRDA--DGLAQTVADARALGGTVPEHRALDISDYDAVAAFAAD 71 (272)
T ss_pred CEEEEeCCCCHHHHHHHHHHHHCCC-------EEEEEeCCH--HHHHHHHHHHHhcCCCcceEEEeeCCCHHHHHHHHHH
Confidence 4799999999999999999998875 788888753 223322223321100 0 112333222222
Q ss_pred --HHhCCCcEEEEecCCCCCC---CCCh---hHHHhhhHHHHHHHHHHHHhhc---CCCcEEEEEeCChhhHHHHHHHHC
Q 019990 77 --EACKDVNIAVMVGGFPRKE---GMER---KDVMSKNVSIYKAQASALEKHA---APNCKVLVVANPANTNALILKEFA 145 (332)
Q Consensus 77 --~a~~~aDiVi~~ag~~~~~---~~~~---~~~~~~N~~~~~~i~~~i~~~~---~~~~~viv~snp~~~~~~~~~~~~ 145 (332)
+.+...|+|||.+|..... ..+. ...+..|+.....+.+.+..+- ...++++++|+....
T Consensus 72 ~~~~~~~id~lv~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~l~~~~~~g~ii~isS~~~~--------- 142 (272)
T PRK07832 72 IHAAHGSMDVVMNIAGISAWGTVDRLTHEQWRRMVDVNLMGPIHVIETFVPPMVAAGRGGHLVNVSSAAGL--------- 142 (272)
T ss_pred HHHhcCCCCEEEECCCCCCCCccccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhCCCCcEEEEEcccccc---------
Confidence 2234589999999864211 1222 2346677777666666654321 123566666654321
Q ss_pred CCCCCCcEEEeecccHHHHHHHHHHHcCCCCCCeee
Q 019990 146 PSIPAKNITCLTRLDHNRAMGQISERLKVHVSDVKN 181 (332)
Q Consensus 146 ~~~~~~~i~~~t~l~~~r~~~~~a~~~~v~~~~v~~ 181 (332)
.+.+....|+.++.....+...++..+. ...++.
T Consensus 143 ~~~~~~~~Y~~sK~a~~~~~~~l~~e~~--~~~i~v 176 (272)
T PRK07832 143 VALPWHAAYSASKFGLRGLSEVLRFDLA--RHGIGV 176 (272)
T ss_pred CCCCCCcchHHHHHHHHHHHHHHHHHhh--hcCcEE
Confidence 1223233567777666666666665543 234553
|
|
| >PRK12824 acetoacetyl-CoA reductase; Provisional | Back alignment and domain information |
|---|
Probab=98.09 E-value=1.4e-05 Score=70.65 Aligned_cols=148 Identities=16% Similarity=0.076 Sum_probs=80.5
Q ss_pred cEEEEEcCCChhHHHHHHHHHhcccCCCCCCeEEEEEecccchhhhhhhHhhhhhh--cc-CCccceEEeCCHHHHh---
Q 019990 6 LRVLVTGAAGQIGYALVPMIARGIMLGPDQPVILHMLDIEPAAEALNGVKMELIDA--AF-PLLKGVVATTDVVEAC--- 79 (332)
Q Consensus 6 ~kI~VtGaaG~IGs~l~~~L~~~~~~~~~~~~~i~l~D~~~~~~~~~~~~~dl~~~--~~-~~~~~v~~~~~~~~a~--- 79 (332)
++++||||+|++|++++..|.+.|. ++.+.+++.. +........+... .. ....|+....++.+++
T Consensus 3 k~vlItG~s~~iG~~la~~l~~~g~-------~vi~~~r~~~-~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~ 74 (245)
T PRK12824 3 KIALVTGAKRGIGSAIARELLNDGY-------RVIATYFSGN-DCAKDWFEEYGFTEDQVRLKELDVTDTEECAEALAEI 74 (245)
T ss_pred CEEEEeCCCchHHHHHHHHHHHcCC-------EEEEEeCCcH-HHHHHHHHHhhccCCeEEEEEcCCCCHHHHHHHHHHH
Confidence 5799999999999999999998775 7888887532 1111111111110 00 1123343333333332
Q ss_pred ----CCCcEEEEecCCCCC---CCCChh---HHHhhhHHHHHHH----HHHHHhhcCCCcEEEEEeCChhhHHHHHHHHC
Q 019990 80 ----KDVNIAVMVGGFPRK---EGMERK---DVMSKNVSIYKAQ----ASALEKHAAPNCKVLVVANPANTNALILKEFA 145 (332)
Q Consensus 80 ----~~aDiVi~~ag~~~~---~~~~~~---~~~~~N~~~~~~i----~~~i~~~~~~~~~viv~snp~~~~~~~~~~~~ 145 (332)
...|++||.+|.... ...+.+ ..++.|+.....+ .+.+++. +..+++++|+....
T Consensus 75 ~~~~~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~--~~~~iv~iss~~~~--------- 143 (245)
T PRK12824 75 EEEEGPVDILVNNAGITRDSVFKRMSHQEWNDVINTNLNSVFNVTQPLFAAMCEQ--GYGRIINISSVNGL--------- 143 (245)
T ss_pred HHHcCCCCEEEECCCCCCCCccccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHh--CCeEEEEECChhhc---------
Confidence 358999999986421 111222 2456676665555 4444443 23477777653211
Q ss_pred CCCCCCcEEEeecccHHHHHHHHHHHc
Q 019990 146 PSIPAKNITCLTRLDHNRAMGQISERL 172 (332)
Q Consensus 146 ~~~~~~~i~~~t~l~~~r~~~~~a~~~ 172 (332)
.+.+....|+.++.....+.+.+++.+
T Consensus 144 ~~~~~~~~Y~~sK~a~~~~~~~l~~~~ 170 (245)
T PRK12824 144 KGQFGQTNYSAAKAGMIGFTKALASEG 170 (245)
T ss_pred cCCCCChHHHHHHHHHHHHHHHHHHHH
Confidence 112222346666665566666666654
|
|
| >TIGR03443 alpha_am_amid L-aminoadipate-semialdehyde dehydrogenase | Back alignment and domain information |
|---|
Probab=98.09 E-value=1.2e-05 Score=88.58 Aligned_cols=177 Identities=11% Similarity=0.075 Sum_probs=99.2
Q ss_pred CCcEEEEEcCCChhHHHHHHHHHhcccCCCCCCeEEEEEecccchh-hhhhhHhhhhhh---------cc-CCccceEEe
Q 019990 4 NPLRVLVTGAAGQIGYALVPMIARGIMLGPDQPVILHMLDIEPAAE-ALNGVKMELIDA---------AF-PLLKGVVAT 72 (332)
Q Consensus 4 ~~~kI~VtGaaG~IGs~l~~~L~~~~~~~~~~~~~i~l~D~~~~~~-~~~~~~~dl~~~---------~~-~~~~~v~~~ 72 (332)
++++|+||||+||+|++++..|++.+.. ...+|+...+..... ........+... .. ....++...
T Consensus 970 ~~~~VlvTGatGflG~~l~~~Ll~~~~~---~~~~V~~l~R~~~~~~~~~~l~~~~~~~~~~~~~~~~~i~~~~gDl~~~ 1046 (1389)
T TIGR03443 970 TPITVFLTGATGFLGSFILRDLLTRRSN---SNFKVFAHVRAKSEEAGLERLRKTGTTYGIWDEEWASRIEVVLGDLSKE 1046 (1389)
T ss_pred CCceEEEeCCccccHHHHHHHHHhcCCC---CCcEEEEEECcCChHHHHHHHHHHHHHhCCCchhhhcceEEEeccCCCc
Confidence 3578999999999999999999876510 012566655542211 111000000000 00 011222211
Q ss_pred ------CCHHHHhCCCcEEEEecCCCCCCCCChhHHHhhhHHHHHHHHHHHHhhcCCCcEEEEEeCChhhHH-----H--
Q 019990 73 ------TDVVEACKDVNIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEKHAAPNCKVLVVANPANTNA-----L-- 139 (332)
Q Consensus 73 ------~~~~~a~~~aDiVi~~ag~~~~~~~~~~~~~~~N~~~~~~i~~~i~~~~~~~~~viv~snp~~~~~-----~-- 139 (332)
....+...++|+|||+|+... ...+...+...|+.++.++++.+.+.. .. +++++|+. .+.. .
T Consensus 1047 ~lgl~~~~~~~l~~~~d~iiH~Aa~~~-~~~~~~~~~~~nv~gt~~ll~~a~~~~-~~-~~v~vSS~-~v~~~~~~~~~~ 1122 (1389)
T TIGR03443 1047 KFGLSDEKWSDLTNEVDVIIHNGALVH-WVYPYSKLRDANVIGTINVLNLCAEGK-AK-QFSFVSST-SALDTEYYVNLS 1122 (1389)
T ss_pred cCCcCHHHHHHHHhcCCEEEECCcEec-CccCHHHHHHhHHHHHHHHHHHHHhCC-Cc-eEEEEeCe-eecCcccccchh
Confidence 112334568999999997643 223444555679999999999998763 22 55555542 1100 0
Q ss_pred --HHHHHCCCCC-----------CCcEEEeecccHHHHHHHHHHHcCCCCCCeeeeEEEecC
Q 019990 140 --ILKEFAPSIP-----------AKNITCLTRLDHNRAMGQISERLKVHVSDVKNVIIWGNH 188 (332)
Q Consensus 140 --~~~~~~~~~~-----------~~~i~~~t~l~~~r~~~~~a~~~~v~~~~v~~~~V~G~h 188 (332)
....-..+++ +..-|+.+|...+++....++ .|++...+|...|+|..
T Consensus 1123 ~~~~~~~~~~~~e~~~~~~~~~~~~~~Y~~sK~~aE~l~~~~~~-~g~~~~i~Rpg~v~G~~ 1183 (1389)
T TIGR03443 1123 DELVQAGGAGIPESDDLMGSSKGLGTGYGQSKWVAEYIIREAGK-RGLRGCIVRPGYVTGDS 1183 (1389)
T ss_pred hhhhhccCCCCCcccccccccccCCCChHHHHHHHHHHHHHHHh-CCCCEEEECCCccccCC
Confidence 0000000010 112377788888888776655 49999999998999964
|
Members of this protein family are L-aminoadipate-semialdehyde dehydrogenase (EC 1.2.1.31), product of the LYS2 gene. It is also called alpha-aminoadipate reductase. In fungi, lysine is synthesized via aminoadipate. Currently, all members of this family are fungal. |
| >PRK09730 putative NAD(P)-binding oxidoreductase; Provisional | Back alignment and domain information |
|---|
Probab=98.09 E-value=2.1e-05 Score=69.61 Aligned_cols=158 Identities=18% Similarity=0.150 Sum_probs=80.7
Q ss_pred cEEEEEcCCChhHHHHHHHHHhcccCCCCCCeEEEEE-ecccchhhhhhhHhhhhhhc--c-CCccceEEeCCHHHHh--
Q 019990 6 LRVLVTGAAGQIGYALVPMIARGIMLGPDQPVILHML-DIEPAAEALNGVKMELIDAA--F-PLLKGVVATTDVVEAC-- 79 (332)
Q Consensus 6 ~kI~VtGaaG~IGs~l~~~L~~~~~~~~~~~~~i~l~-D~~~~~~~~~~~~~dl~~~~--~-~~~~~v~~~~~~~~a~-- 79 (332)
+.++||||+|+||++++..|++.+. ++.+. +.+. +.......++.... . ....|+....++.+++
T Consensus 2 ~~~lItGa~g~iG~~l~~~l~~~g~-------~v~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~D~~d~~~i~~~~~~ 72 (247)
T PRK09730 2 AIALVTGGSRGIGRATALLLAQEGY-------TVAVNYQQNL--HAAQEVVNLITQAGGKAFVLQADISDENQVVAMFTA 72 (247)
T ss_pred CEEEEeCCCchHHHHHHHHHHHCCC-------EEEEEeCCCh--HHHHHHHHHHHhCCCeEEEEEccCCCHHHHHHHHHH
Confidence 4799999999999999999998775 66553 3322 22222222332110 0 1123444333333333
Q ss_pred -----CCCcEEEEecCCCCCC----CCCh---hHHHhhhHHHHHHHHHHHHhh-----cCCCcEEEEEeCChhhHHHHHH
Q 019990 80 -----KDVNIAVMVGGFPRKE----GMER---KDVMSKNVSIYKAQASALEKH-----AAPNCKVLVVANPANTNALILK 142 (332)
Q Consensus 80 -----~~aDiVi~~ag~~~~~----~~~~---~~~~~~N~~~~~~i~~~i~~~-----~~~~~~viv~snp~~~~~~~~~ 142 (332)
...|+|||.+|..... ..+. ...+..|+.....+.+.+... +....+++++|+....
T Consensus 73 ~~~~~~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~g~~v~~sS~~~~------ 146 (247)
T PRK09730 73 IDQHDEPLAALVNNAGILFTQCTVENLTAERINRVLSTNVTGYFLCCREAVKRMALKHGGSGGAIVNVSSAASR------ 146 (247)
T ss_pred HHHhCCCCCEEEECCCCCCCCCccccCCHHHHHHHHhhhhHHHHHHHHHHHHHHHhcCCCCCcEEEEECchhhc------
Confidence 3468999999863211 1121 134566766654444433222 1112456666653211
Q ss_pred HHCCCCCCC-cEEEeecccHHHHHHHHHHHc---CCCCCCeee
Q 019990 143 EFAPSIPAK-NITCLTRLDHNRAMGQISERL---KVHVSDVKN 181 (332)
Q Consensus 143 ~~~~~~~~~-~i~~~t~l~~~r~~~~~a~~~---~v~~~~v~~ 181 (332)
.+.+.. ..|+.++.....+...++..+ |++...+++
T Consensus 147 ---~~~~~~~~~Y~~sK~~~~~~~~~l~~~~~~~~i~v~~i~p 186 (247)
T PRK09730 147 ---LGAPGEYVDYAASKGAIDTLTTGLSLEVAAQGIRVNCVRP 186 (247)
T ss_pred ---cCCCCcccchHhHHHHHHHHHHHHHHHHHHhCeEEEEEEe
Confidence 111211 236667766666666666554 444444443
|
|
| >KOG1205 consensus Predicted dehydrogenase [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=98.09 E-value=8.5e-05 Score=66.96 Aligned_cols=157 Identities=21% Similarity=0.206 Sum_probs=101.5
Q ss_pred CCcEEEEEcCCChhHHHHHHHHHhcccCCCCCCeEEEEEecccchhhhhhhHhhhhhhcc-----CCccceEEeCCHHHH
Q 019990 4 NPLRVLVTGAAGQIGYALVPMIARGIMLGPDQPVILHMLDIEPAAEALNGVKMELIDAAF-----PLLKGVVATTDVVEA 78 (332)
Q Consensus 4 ~~~kI~VtGaaG~IGs~l~~~L~~~~~~~~~~~~~i~l~D~~~~~~~~~~~~~dl~~~~~-----~~~~~v~~~~~~~~a 78 (332)
+.+.|+||||+.-||.++|+.|...|. .++++.... ++++....++..... ....|++..++..++
T Consensus 11 ~~kvVvITGASsGIG~~lA~~la~~G~-------~l~lvar~~--rrl~~v~~~l~~~~~~~~v~~~~~Dvs~~~~~~~~ 81 (282)
T KOG1205|consen 11 AGKVVLITGASSGIGEALAYELAKRGA-------KLVLVARRA--RRLERVAEELRKLGSLEKVLVLQLDVSDEESVKKF 81 (282)
T ss_pred CCCEEEEeCCCcHHHHHHHHHHHhCCC-------ceEEeehhh--hhHHHHHHHHHHhCCcCccEEEeCccCCHHHHHHH
Confidence 567899999999999999999999885 566666543 244444344443211 112455554444433
Q ss_pred -------hCCCcEEEEecCCCCCCC---CC---hhHHHhhhH----HHHHHHHHHHHhhcCCCcEEEEEeCChhhHHHHH
Q 019990 79 -------CKDVNIAVMVGGFPRKEG---ME---RKDVMSKNV----SIYKAQASALEKHAAPNCKVLVVANPANTNALIL 141 (332)
Q Consensus 79 -------~~~aDiVi~~ag~~~~~~---~~---~~~~~~~N~----~~~~~i~~~i~~~~~~~~~viv~snp~~~~~~~~ 141 (332)
+.+.|+.|+-||..+..- .+ ....++.|. ..++..+..+++.. +++|+++++...-
T Consensus 82 ~~~~~~~fg~vDvLVNNAG~~~~~~~~~~~~~~~~~~mdtN~~G~V~~Tk~alp~m~~r~--~GhIVvisSiaG~----- 154 (282)
T KOG1205|consen 82 VEWAIRHFGRVDVLVNNAGISLVGFLEDTDIEDVRNVMDTNVFGTVYLTKAALPSMKKRN--DGHIVVISSIAGK----- 154 (282)
T ss_pred HHHHHHhcCCCCEEEecCccccccccccCcHHHHHHHhhhhchhhHHHHHHHHHHhhhcC--CCeEEEEeccccc-----
Confidence 458999999999865211 11 123456664 55577777777763 5787877765432
Q ss_pred HHHCCCCCCCcEEEeecccHHHHHHHHHHHcCCCCCCee
Q 019990 142 KEFAPSIPAKNITCLTRLDHNRAMGQISERLKVHVSDVK 180 (332)
Q Consensus 142 ~~~~~~~~~~~i~~~t~l~~~r~~~~~a~~~~v~~~~v~ 180 (332)
..+|...+|..+|..-.-|-..+...+.-....++
T Consensus 155 ----~~~P~~~~Y~ASK~Al~~f~etLR~El~~~~~~i~ 189 (282)
T KOG1205|consen 155 ----MPLPFRSIYSASKHALEGFFETLRQELIPLGTIII 189 (282)
T ss_pred ----cCCCcccccchHHHHHHHHHHHHHHHhhccCceEE
Confidence 23555558899998888888888777766555555
|
|
| >PRK05854 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=98.07 E-value=2.2e-05 Score=72.66 Aligned_cols=170 Identities=11% Similarity=0.031 Sum_probs=94.3
Q ss_pred CcEEEEEcCCChhHHHHHHHHHhcccCCCCCCeEEEEEecccchhhhhhhHhhhhhhc----c-CCccceEEeCCHHHH-
Q 019990 5 PLRVLVTGAAGQIGYALVPMIARGIMLGPDQPVILHMLDIEPAAEALNGVKMELIDAA----F-PLLKGVVATTDVVEA- 78 (332)
Q Consensus 5 ~~kI~VtGaaG~IGs~l~~~L~~~~~~~~~~~~~i~l~D~~~~~~~~~~~~~dl~~~~----~-~~~~~v~~~~~~~~a- 78 (332)
.++++||||+|+||.+++..|++.|. +|++.+++. ++......++.... . ....|+....++.++
T Consensus 14 gk~~lITGas~GIG~~~a~~La~~G~-------~Vil~~R~~--~~~~~~~~~l~~~~~~~~v~~~~~Dl~d~~sv~~~~ 84 (313)
T PRK05854 14 GKRAVVTGASDGLGLGLARRLAAAGA-------EVILPVRNR--AKGEAAVAAIRTAVPDAKLSLRALDLSSLASVAALG 84 (313)
T ss_pred CCEEEEeCCCChHHHHHHHHHHHCCC-------EEEEEeCCH--HHHHHHHHHHHHhCCCCceEEEEecCCCHHHHHHHH
Confidence 47899999999999999999998875 888888753 23333333332210 0 011233332223222
Q ss_pred ------hCCCcEEEEecCCCCCC--CCC---hhHHHhhhHHHH----HHHHHHHHhhcCCCcEEEEEeCChhhHHHHH-H
Q 019990 79 ------CKDVNIAVMVGGFPRKE--GME---RKDVMSKNVSIY----KAQASALEKHAAPNCKVLVVANPANTNALIL-K 142 (332)
Q Consensus 79 ------~~~aDiVi~~ag~~~~~--~~~---~~~~~~~N~~~~----~~i~~~i~~~~~~~~~viv~snp~~~~~~~~-~ 142 (332)
....|++|+.||....+ ..+ .+..+..|.... +.+++.+++. .+++|++|+-......+- .
T Consensus 85 ~~~~~~~~~iD~li~nAG~~~~~~~~~t~~~~e~~~~vN~~g~~~l~~~llp~l~~~---~~riv~vsS~~~~~~~~~~~ 161 (313)
T PRK05854 85 EQLRAEGRPIHLLINNAGVMTPPERQTTADGFELQFGTNHLGHFALTAHLLPLLRAG---RARVTSQSSIAARRGAINWD 161 (313)
T ss_pred HHHHHhCCCccEEEECCccccCCccccCcccHHHHhhhhhHHHHHHHHHHHHHHHhC---CCCeEEEechhhcCCCcCcc
Confidence 23579999999864221 111 223456665543 4444444432 346666665322110000 0
Q ss_pred H--HCCCCCCCcEEEeecccHHHHHHHHHHHcCCCCCCeeeeEEEec
Q 019990 143 E--FAPSIPAKNITCLTRLDHNRAMGQISERLKVHVSDVKNVIIWGN 187 (332)
Q Consensus 143 ~--~~~~~~~~~i~~~t~l~~~r~~~~~a~~~~v~~~~v~~~~V~G~ 187 (332)
. ....+++...|+.+|+....+...+++.+......|+.. .+.+
T Consensus 162 ~~~~~~~~~~~~~Y~~SK~a~~~~~~~la~~~~~~~~gI~v~-~v~P 207 (313)
T PRK05854 162 DLNWERSYAGMRAYSQSKIAVGLFALELDRRSRAAGWGITSN-LAHP 207 (313)
T ss_pred cccccccCcchhhhHHHHHHHHHHHHHHHHHhhcCCCCeEEE-EEec
Confidence 0 001234445688899988888888887765545567643 3444
|
|
| >PRK08416 7-alpha-hydroxysteroid dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=98.07 E-value=7.1e-05 Score=67.08 Aligned_cols=157 Identities=12% Similarity=0.128 Sum_probs=86.6
Q ss_pred CCcEEEEEcCCChhHHHHHHHHHhcccCCCCCCeEEEEEecccchhhhhhhHhhhhhh-c---cCCccceEEeCCHHHH-
Q 019990 4 NPLRVLVTGAAGQIGYALVPMIARGIMLGPDQPVILHMLDIEPAAEALNGVKMELIDA-A---FPLLKGVVATTDVVEA- 78 (332)
Q Consensus 4 ~~~kI~VtGaaG~IGs~l~~~L~~~~~~~~~~~~~i~l~D~~~~~~~~~~~~~dl~~~-~---~~~~~~v~~~~~~~~a- 78 (332)
+.++|+||||++.||.+++..|++.|. +|.+.+.+. .+.+.....++... . ..+..|++...++.+.
T Consensus 7 ~~k~vlItGas~gIG~~ia~~l~~~G~-------~v~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~ 78 (260)
T PRK08416 7 KGKTLVISGGTRGIGKAIVYEFAQSGV-------NIAFTYNSN-VEEANKIAEDLEQKYGIKAKAYPLNILEPETYKELF 78 (260)
T ss_pred CCCEEEEeCCCchHHHHHHHHHHHCCC-------EEEEEcCCC-HHHHHHHHHHHHHhcCCceEEEEcCCCCHHHHHHHH
Confidence 357899999999999999999999875 677765432 22333333333211 0 1112344433333222
Q ss_pred ------hCCCcEEEEecCCCCC-------C--CCChh---HHHhhhHHH----HHHHHHHHHhhcCCCcEEEEEeCChhh
Q 019990 79 ------CKDVNIAVMVGGFPRK-------E--GMERK---DVMSKNVSI----YKAQASALEKHAAPNCKVLVVANPANT 136 (332)
Q Consensus 79 ------~~~aDiVi~~ag~~~~-------~--~~~~~---~~~~~N~~~----~~~i~~~i~~~~~~~~~viv~snp~~~ 136 (332)
+...|++|+.||.... + ..+.. ..+..|+.. .+.+++.+++. +.+.+|++|+....
T Consensus 79 ~~~~~~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~--~~g~iv~isS~~~~ 156 (260)
T PRK08416 79 KKIDEDFDRVDFFISNAIISGRAVVGGYTKFMRLKPKGLNNIYTATVNAFVVGAQEAAKRMEKV--GGGSIISLSSTGNL 156 (260)
T ss_pred HHHHHhcCCccEEEECccccccccccccCChhhCCHHHHHHHHhhhhHHHHHHHHHHHHhhhcc--CCEEEEEEeccccc
Confidence 2357999999975311 1 01111 133444433 23444444432 23566777653221
Q ss_pred HHHHHHHHCCCCCCCcEEEeecccHHHHHHHHHHHcCCCCCCeee
Q 019990 137 NALILKEFAPSIPAKNITCLTRLDHNRAMGQISERLKVHVSDVKN 181 (332)
Q Consensus 137 ~~~~~~~~~~~~~~~~i~~~t~l~~~r~~~~~a~~~~v~~~~v~~ 181 (332)
...+....|+.+|.....+...+++.++ +..|+.
T Consensus 157 ---------~~~~~~~~Y~asK~a~~~~~~~la~el~--~~gi~v 190 (260)
T PRK08416 157 ---------VYIENYAGHGTSKAAVETMVKYAATELG--EKNIRV 190 (260)
T ss_pred ---------cCCCCcccchhhHHHHHHHHHHHHHHhh--hhCeEE
Confidence 1122223578899988899888888875 344553
|
|
| >PRK05855 short chain dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=98.06 E-value=3.4e-05 Score=76.99 Aligned_cols=157 Identities=15% Similarity=0.056 Sum_probs=91.0
Q ss_pred CCcEEEEEcCCChhHHHHHHHHHhcccCCCCCCeEEEEEecccchhhhhhhHhhhhhhc---cCCccceEEeCCHHHHh-
Q 019990 4 NPLRVLVTGAAGQIGYALVPMIARGIMLGPDQPVILHMLDIEPAAEALNGVKMELIDAA---FPLLKGVVATTDVVEAC- 79 (332)
Q Consensus 4 ~~~kI~VtGaaG~IGs~l~~~L~~~~~~~~~~~~~i~l~D~~~~~~~~~~~~~dl~~~~---~~~~~~v~~~~~~~~a~- 79 (332)
+.++++||||+|+||++++..|.+.|. +|.+++++. +.+.....++.... .....|++....+.+.+
T Consensus 314 ~~~~~lv~G~s~giG~~~a~~l~~~G~-------~v~~~~r~~--~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~~~~~~~ 384 (582)
T PRK05855 314 SGKLVVVTGAGSGIGRETALAFAREGA-------EVVASDIDE--AAAERTAELIRAAGAVAHAYRVDVSDADAMEAFAE 384 (582)
T ss_pred CCCEEEEECCcCHHHHHHHHHHHHCCC-------EEEEEeCCH--HHHHHHHHHHHhcCCeEEEEEcCCCCHHHHHHHHH
Confidence 457899999999999999999998886 799999854 23332222332210 01123444433333332
Q ss_pred ------CCCcEEEEecCCCCCC---CCChh---HHHhhhHHHHHHHHHH----HHhhcCCCcEEEEEeCChhhHHHHHHH
Q 019990 80 ------KDVNIAVMVGGFPRKE---GMERK---DVMSKNVSIYKAQASA----LEKHAAPNCKVLVVANPANTNALILKE 143 (332)
Q Consensus 80 ------~~aDiVi~~ag~~~~~---~~~~~---~~~~~N~~~~~~i~~~----i~~~~~~~~~viv~snp~~~~~~~~~~ 143 (332)
...|++|+.||..... ..+.+ ..+..|+.+...+.+. +.+.+ ..+++|++|+-...
T Consensus 385 ~~~~~~g~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~n~~g~~~~~~~~~~~~~~~~-~~g~iv~~sS~~~~------- 456 (582)
T PRK05855 385 WVRAEHGVPDIVVNNAGIGMAGGFLDTSAEDWDRVLDVNLWGVIHGCRLFGRQMVERG-TGGHIVNVASAAAY------- 456 (582)
T ss_pred HHHHhcCCCcEEEECCccCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcC-CCcEEEEECChhhc-------
Confidence 2479999999974321 12222 2456776665555444 44432 23567777753221
Q ss_pred HCCCCCCCcEEEeecccHHHHHHHHHHHcCCCCCCeee
Q 019990 144 FAPSIPAKNITCLTRLDHNRAMGQISERLKVHVSDVKN 181 (332)
Q Consensus 144 ~~~~~~~~~i~~~t~l~~~r~~~~~a~~~~v~~~~v~~ 181 (332)
.+.+....|+.+|.....+...++..+. +..|+.
T Consensus 457 --~~~~~~~~Y~~sKaa~~~~~~~l~~e~~--~~gi~v 490 (582)
T PRK05855 457 --APSRSLPAYATSKAAVLMLSECLRAELA--AAGIGV 490 (582)
T ss_pred --cCCCCCcHHHHHHHHHHHHHHHHHHHhc--ccCcEE
Confidence 1223334678888877777777777654 334554
|
|
| >TIGR02632 RhaD_aldol-ADH rhamnulose-1-phosphate aldolase/alcohol dehydrogenase | Back alignment and domain information |
|---|
Probab=98.06 E-value=3.2e-05 Score=78.95 Aligned_cols=155 Identities=15% Similarity=0.144 Sum_probs=88.3
Q ss_pred CcEEEEEcCCChhHHHHHHHHHhcccCCCCCCeEEEEEecccchhhhhhhHhhhhhh----c-cCCccceEEeCCHHHHh
Q 019990 5 PLRVLVTGAAGQIGYALVPMIARGIMLGPDQPVILHMLDIEPAAEALNGVKMELIDA----A-FPLLKGVVATTDVVEAC 79 (332)
Q Consensus 5 ~~kI~VtGaaG~IGs~l~~~L~~~~~~~~~~~~~i~l~D~~~~~~~~~~~~~dl~~~----~-~~~~~~v~~~~~~~~a~ 79 (332)
.++|+||||+|+||++++..|++.|. +|+++|++. +.+.....++... . .....|++...++.+++
T Consensus 414 gkvvLVTGasggIG~aiA~~La~~Ga-------~Vvi~~r~~--~~~~~~~~~l~~~~~~~~~~~v~~Dvtd~~~v~~a~ 484 (676)
T TIGR02632 414 RRVAFVTGGAGGIGRETARRLAAEGA-------HVVLADLNL--EAAEAVAAEINGQFGAGRAVALKMDVTDEQAVKAAF 484 (676)
T ss_pred CCEEEEeCCCcHHHHHHHHHHHhCCC-------EEEEEeCCH--HHHHHHHHHHHhhcCCCcEEEEECCCCCHHHHHHHH
Confidence 46899999999999999999998875 899999853 2233222222210 0 01123444443444443
Q ss_pred C-------CCcEEEEecCCCCCC---CCChhH---HHhhhHHHH----HHHHHHHHhhcCCCcEEEEEeCChhhHHHHHH
Q 019990 80 K-------DVNIAVMVGGFPRKE---GMERKD---VMSKNVSIY----KAQASALEKHAAPNCKVLVVANPANTNALILK 142 (332)
Q Consensus 80 ~-------~aDiVi~~ag~~~~~---~~~~~~---~~~~N~~~~----~~i~~~i~~~~~~~~~viv~snp~~~~~~~~~ 142 (332)
+ +.|+|||.||..... ..+..+ .+..|+... +..+..+++.+ ....++++|+....
T Consensus 485 ~~i~~~~g~iDilV~nAG~~~~~~~~~~~~e~~~~~~~vN~~g~~~l~~~al~~m~~~~-~~g~IV~iSS~~a~------ 557 (676)
T TIGR02632 485 ADVALAYGGVDIVVNNAGIATSSPFEETTLQEWQLNLDILATGYFLVAREAFRQMREQG-LGGNIVFIASKNAV------ 557 (676)
T ss_pred HHHHHhcCCCcEEEECCCCCCCCCcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-CCCEEEEEeChhhc------
Confidence 3 689999999974321 112222 234454433 33444444432 23466666642211
Q ss_pred HHCCCCCCCcEEEeecccHHHHHHHHHHHcCCCCCCee
Q 019990 143 EFAPSIPAKNITCLTRLDHNRAMGQISERLKVHVSDVK 180 (332)
Q Consensus 143 ~~~~~~~~~~i~~~t~l~~~r~~~~~a~~~~v~~~~v~ 180 (332)
.+.+....|+.+|.....+.+.++..++ +..++
T Consensus 558 ---~~~~~~~aY~aSKaA~~~l~r~lA~el~--~~gIr 590 (676)
T TIGR02632 558 ---YAGKNASAYSAAKAAEAHLARCLAAEGG--TYGIR 590 (676)
T ss_pred ---CCCCCCHHHHHHHHHHHHHHHHHHHHhc--ccCeE
Confidence 1122233578888888888888888765 33455
|
|
| >PRK08415 enoyl-(acyl carrier protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=98.06 E-value=3.3e-05 Score=70.03 Aligned_cols=162 Identities=14% Similarity=0.127 Sum_probs=90.7
Q ss_pred CCCCCcEEEEEcCC--ChhHHHHHHHHHhcccCCCCCCeEEEEEecccc-hhhhhhhHhhhhhhccCCccceEEeCCHHH
Q 019990 1 MAKNPLRVLVTGAA--GQIGYALVPMIARGIMLGPDQPVILHMLDIEPA-AEALNGVKMELIDAAFPLLKGVVATTDVVE 77 (332)
Q Consensus 1 m~~~~~kI~VtGaa--G~IGs~l~~~L~~~~~~~~~~~~~i~l~D~~~~-~~~~~~~~~dl~~~~~~~~~~v~~~~~~~~ 77 (332)
|..+.+.++||||+ +-||..++..|++.|. +|.+.+++.. .+.+.....++... ..+..|++...+..+
T Consensus 1 ~~l~~k~~lItGas~~~GIG~aiA~~la~~G~-------~Vil~~r~~~~~~~~~~~~~~~~~~-~~~~~Dv~d~~~v~~ 72 (274)
T PRK08415 1 MIMKGKKGLIVGVANNKSIAYGIAKACFEQGA-------ELAFTYLNEALKKRVEPIAQELGSD-YVYELDVSKPEHFKS 72 (274)
T ss_pred CccCCcEEEEECCCCCCCHHHHHHHHHHHCCC-------EEEEEecCHHHHHHHHHHHHhcCCc-eEEEecCCCHHHHHH
Confidence 66667889999986 6899999999999885 7888887521 01111111111100 111234433332222
Q ss_pred H-------hCCCcEEEEecCCCCC-------CCCChh---HHHhhhHHHHHHHHHHHHhhcCCCcEEEEEeCChhhHHHH
Q 019990 78 A-------CKDVNIAVMVGGFPRK-------EGMERK---DVMSKNVSIYKAQASALEKHAAPNCKVLVVANPANTNALI 140 (332)
Q Consensus 78 a-------~~~aDiVi~~ag~~~~-------~~~~~~---~~~~~N~~~~~~i~~~i~~~~~~~~~viv~snp~~~~~~~ 140 (332)
. +...|++|+.||.... ...+.+ ..++.|+.....+.+.+...-..+++++++|+-...
T Consensus 73 ~~~~i~~~~g~iDilVnnAG~~~~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~p~m~~~g~Iv~isS~~~~---- 148 (274)
T PRK08415 73 LAESLKKDLGKIDFIVHSVAFAPKEALEGSFLETSKEAFNIAMEISVYSLIELTRALLPLLNDGASVLTLSYLGGV---- 148 (274)
T ss_pred HHHHHHHHcCCCCEEEECCccCcccccccccccCCHHHHHHHhhhhhHHHHHHHHHHHHHhccCCcEEEEecCCCc----
Confidence 2 2357999999997421 112322 246677666555554444332223566666642110
Q ss_pred HHHHCCCCCCCcEEEeecccHHHHHHHHHHHcCCCCCCeee
Q 019990 141 LKEFAPSIPAKNITCLTRLDHNRAMGQISERLKVHVSDVKN 181 (332)
Q Consensus 141 ~~~~~~~~~~~~i~~~t~l~~~r~~~~~a~~~~v~~~~v~~ 181 (332)
.+.+....|+.+|-.-..+.+.++..+. +..|+.
T Consensus 149 -----~~~~~~~~Y~asKaal~~l~~~la~el~--~~gIrV 182 (274)
T PRK08415 149 -----KYVPHYNVMGVAKAALESSVRYLAVDLG--KKGIRV 182 (274)
T ss_pred -----cCCCcchhhhhHHHHHHHHHHHHHHHhh--hcCeEE
Confidence 1122223577888887888888887764 455664
|
|
| >PRK12743 oxidoreductase; Provisional | Back alignment and domain information |
|---|
Probab=98.06 E-value=2.6e-05 Score=69.68 Aligned_cols=152 Identities=11% Similarity=0.095 Sum_probs=83.9
Q ss_pred CcEEEEEcCCChhHHHHHHHHHhcccCCCCCCeEEEEEecccchhhhhhhHhhhhhhc--cC-CccceEEeCCHHHH---
Q 019990 5 PLRVLVTGAAGQIGYALVPMIARGIMLGPDQPVILHMLDIEPAAEALNGVKMELIDAA--FP-LLKGVVATTDVVEA--- 78 (332)
Q Consensus 5 ~~kI~VtGaaG~IGs~l~~~L~~~~~~~~~~~~~i~l~D~~~~~~~~~~~~~dl~~~~--~~-~~~~v~~~~~~~~a--- 78 (332)
+++|+||||+|+||++++..|++.|. +|.+++.+.. +.+.....++.... .. ...|+....++.++
T Consensus 2 ~k~vlItGas~giG~~~a~~l~~~G~-------~V~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~ 73 (256)
T PRK12743 2 AQVAIVTASDSGIGKACALLLAQQGF-------DIGITWHSDE-EGAKETAEEVRSHGVRAEIRQLDLSDLPEGAQALDK 73 (256)
T ss_pred CCEEEEECCCchHHHHHHHHHHHCCC-------EEEEEeCCCh-HHHHHHHHHHHhcCCceEEEEccCCCHHHHHHHHHH
Confidence 35799999999999999999999885 7777654321 22222222222111 10 11234333332222
Q ss_pred ----hCCCcEEEEecCCCCCC---CCCh---hHHHhhhHHHHHHHHHHHHhhc---CCCcEEEEEeCChhhHHHHHHHHC
Q 019990 79 ----CKDVNIAVMVGGFPRKE---GMER---KDVMSKNVSIYKAQASALEKHA---APNCKVLVVANPANTNALILKEFA 145 (332)
Q Consensus 79 ----~~~aDiVi~~ag~~~~~---~~~~---~~~~~~N~~~~~~i~~~i~~~~---~~~~~viv~snp~~~~~~~~~~~~ 145 (332)
+...|+|||.+|..... ..+. ...+..|......+.+++..+- ....+++++|+-...
T Consensus 74 ~~~~~~~id~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~l~~~~~~g~ii~isS~~~~--------- 144 (256)
T PRK12743 74 LIQRLGRIDVLVNNAGAMTKAPFLDMDFDEWRKIFTVDVDGAFLCSQIAARHMVKQGQGGRIINITSVHEH--------- 144 (256)
T ss_pred HHHHcCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCCeEEEEEeecccc---------
Confidence 23579999999864321 1121 2345677776666666554431 123567777653211
Q ss_pred CCCCCCcEEEeecccHHHHHHHHHHHcC
Q 019990 146 PSIPAKNITCLTRLDHNRAMGQISERLK 173 (332)
Q Consensus 146 ~~~~~~~i~~~t~l~~~r~~~~~a~~~~ 173 (332)
.+.++...|+.++.....+...++..+.
T Consensus 145 ~~~~~~~~Y~~sK~a~~~l~~~la~~~~ 172 (256)
T PRK12743 145 TPLPGASAYTAAKHALGGLTKAMALELV 172 (256)
T ss_pred CCCCCcchhHHHHHHHHHHHHHHHHHhh
Confidence 1223333567777766677677777654
|
|
| >PRK07577 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=98.05 E-value=2.1e-05 Score=69.08 Aligned_cols=139 Identities=15% Similarity=0.114 Sum_probs=76.9
Q ss_pred CcEEEEEcCCChhHHHHHHHHHhcccCCCCCCeEEEEEecccchhhhhhhHhhhhhhccCCccceEEeCCHHHHhC----
Q 019990 5 PLRVLVTGAAGQIGYALVPMIARGIMLGPDQPVILHMLDIEPAAEALNGVKMELIDAAFPLLKGVVATTDVVEACK---- 80 (332)
Q Consensus 5 ~~kI~VtGaaG~IGs~l~~~L~~~~~~~~~~~~~i~l~D~~~~~~~~~~~~~dl~~~~~~~~~~v~~~~~~~~a~~---- 80 (332)
.++|+||||+|+||++++..|++.|. ++++++++... .... + ....|+....++.++++
T Consensus 3 ~k~vlItG~s~~iG~~ia~~l~~~G~-------~v~~~~r~~~~-~~~~------~---~~~~D~~~~~~~~~~~~~~~~ 65 (234)
T PRK07577 3 SRTVLVTGATKGIGLALSLRLANLGH-------QVIGIARSAID-DFPG------E---LFACDLADIEQTAATLAQINE 65 (234)
T ss_pred CCEEEEECCCCcHHHHHHHHHHHCCC-------EEEEEeCCccc-ccCc------e---EEEeeCCCHHHHHHHHHHHHH
Confidence 46899999999999999999998875 78888875421 0000 0 01122322222222222
Q ss_pred --CCcEEEEecCCCCCC---CCChh---HHHhhhHHHHHHHH----HHHHhhcCCCcEEEEEeCChhhHHHHHHHHCCCC
Q 019990 81 --DVNIAVMVGGFPRKE---GMERK---DVMSKNVSIYKAQA----SALEKHAAPNCKVLVVANPANTNALILKEFAPSI 148 (332)
Q Consensus 81 --~aDiVi~~ag~~~~~---~~~~~---~~~~~N~~~~~~i~----~~i~~~~~~~~~viv~snp~~~~~~~~~~~~~~~ 148 (332)
+.|+|||++|..... ..+.. ..+..|......+. +.+++.. ..+++++|... . + +.
T Consensus 66 ~~~~d~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~--~~~iv~~sS~~-~--~-------~~ 133 (234)
T PRK07577 66 IHPVDAIVNNVGIALPQPLGKIDLAALQDVYDLNVRAAVQVTQAFLEGMKLRE--QGRIVNICSRA-I--F-------GA 133 (234)
T ss_pred hCCCcEEEECCCCCCCCChHHCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcC--CcEEEEEcccc-c--c-------CC
Confidence 689999999874221 11112 23455655544444 4444432 34666666531 1 0 11
Q ss_pred CCCcEEEeecccHHHHHHHHHHHc
Q 019990 149 PAKNITCLTRLDHNRAMGQISERL 172 (332)
Q Consensus 149 ~~~~i~~~t~l~~~r~~~~~a~~~ 172 (332)
+....|+.++.....+...+++.+
T Consensus 134 ~~~~~Y~~sK~a~~~~~~~~a~e~ 157 (234)
T PRK07577 134 LDRTSYSAAKSALVGCTRTWALEL 157 (234)
T ss_pred CCchHHHHHHHHHHHHHHHHHHHH
Confidence 222345666766666666666554
|
|
| >PRK08936 glucose-1-dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=98.05 E-value=6.1e-05 Score=67.50 Aligned_cols=159 Identities=13% Similarity=0.124 Sum_probs=86.6
Q ss_pred CCcEEEEEcCCChhHHHHHHHHHhcccCCCCCCeEEEEEecccchhhhhhhHhhhhhhc--c-CCccceEEeCCHHHH--
Q 019990 4 NPLRVLVTGAAGQIGYALVPMIARGIMLGPDQPVILHMLDIEPAAEALNGVKMELIDAA--F-PLLKGVVATTDVVEA-- 78 (332)
Q Consensus 4 ~~~kI~VtGaaG~IGs~l~~~L~~~~~~~~~~~~~i~l~D~~~~~~~~~~~~~dl~~~~--~-~~~~~v~~~~~~~~a-- 78 (332)
+.++++||||+|.||.+++..|++.+. .+++...+.. +.......++.... . .+..|++...++.+.
T Consensus 6 ~~k~~lItGa~~gIG~~ia~~l~~~G~-------~vvi~~~~~~-~~~~~~~~~l~~~~~~~~~~~~Dl~~~~~i~~~~~ 77 (261)
T PRK08936 6 EGKVVVITGGSTGLGRAMAVRFGKEKA-------KVVINYRSDE-EEANDVAEEIKKAGGEAIAVKGDVTVESDVVNLIQ 77 (261)
T ss_pred CCCEEEEeCCCChHHHHHHHHHHHCCC-------EEEEEeCCCH-HHHHHHHHHHHHcCCeEEEEEecCCCHHHHHHHHH
Confidence 357899999999999999999998875 6776655321 22222222232110 0 111234333232222
Q ss_pred -----hCCCcEEEEecCCCCCC---CCChh---HHHhhhHHHH----HHHHHHHHhhcCCCcEEEEEeCChhhHHHHHHH
Q 019990 79 -----CKDVNIAVMVGGFPRKE---GMERK---DVMSKNVSIY----KAQASALEKHAAPNCKVLVVANPANTNALILKE 143 (332)
Q Consensus 79 -----~~~aDiVi~~ag~~~~~---~~~~~---~~~~~N~~~~----~~i~~~i~~~~~~~~~viv~snp~~~~~~~~~~ 143 (332)
+...|++||.||..... ..+.. ..+..|+... +.+++.+.+.. ....++++|+-...
T Consensus 78 ~~~~~~g~id~lv~~ag~~~~~~~~~~~~~~~~~~~~~N~~~~~~~~~~~l~~~~~~~-~~g~iv~~sS~~~~------- 149 (261)
T PRK08936 78 TAVKEFGTLDVMINNAGIENAVPSHEMSLEDWNKVINTNLTGAFLGSREAIKYFVEHD-IKGNIINMSSVHEQ------- 149 (261)
T ss_pred HHHHHcCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcC-CCcEEEEEcccccc-------
Confidence 23579999999864321 12222 2356665443 34445555442 34566666652110
Q ss_pred HCCCCCCCcEEEeecccHHHHHHHHHHHcCCCCCCeeee
Q 019990 144 FAPSIPAKNITCLTRLDHNRAMGQISERLKVHVSDVKNV 182 (332)
Q Consensus 144 ~~~~~~~~~i~~~t~l~~~r~~~~~a~~~~v~~~~v~~~ 182 (332)
.+.+....|+.++.....+...+++.+. +..|+..
T Consensus 150 --~~~~~~~~Y~~sKaa~~~~~~~la~e~~--~~gi~v~ 184 (261)
T PRK08936 150 --IPWPLFVHYAASKGGVKLMTETLAMEYA--PKGIRVN 184 (261)
T ss_pred --CCCCCCcccHHHHHHHHHHHHHHHHHHh--hcCeEEE
Confidence 2234344678887766677667776653 3456643
|
|
| >PRK08293 3-hydroxybutyryl-CoA dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=98.04 E-value=0.0001 Score=67.41 Aligned_cols=104 Identities=26% Similarity=0.281 Sum_probs=64.7
Q ss_pred CcEEEEEcCCChhHHHHHHHHHhcccCCCCCCeEEEEEecccchhhhhhhHhhh---hhh---ccC---------Cccce
Q 019990 5 PLRVLVTGAAGQIGYALVPMIARGIMLGPDQPVILHMLDIEPAAEALNGVKMEL---IDA---AFP---------LLKGV 69 (332)
Q Consensus 5 ~~kI~VtGaaG~IGs~l~~~L~~~~~~~~~~~~~i~l~D~~~~~~~~~~~~~dl---~~~---~~~---------~~~~v 69 (332)
.+||+|+| +|.+|+.++..|+..|+ +|+++|.+.. .++.....+ .+. ... ...++
T Consensus 3 ~~kIaViG-aG~mG~~iA~~la~~G~-------~V~l~d~~~~--~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 72 (287)
T PRK08293 3 IKNVTVAG-AGVLGSQIAFQTAFHGF-------DVTIYDISDE--ALEKAKERIAKLADRYVRDLEATKEAPAEAALNRI 72 (287)
T ss_pred ccEEEEEC-CCHHHHHHHHHHHhcCC-------eEEEEeCCHH--HHHHHHHHHHHHHHHHHHcCCCChhhhHHHHHcCe
Confidence 46899999 69999999999998875 8999998642 222111111 000 000 01356
Q ss_pred EEeCCHHHHhCCCcEEEEecCCCCCCCCChhHHHhhhHHHHHHHHHHHHhhcCCCcEEEEEeCCh
Q 019990 70 VATTDVVEACKDVNIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEKHAAPNCKVLVVANPA 134 (332)
Q Consensus 70 ~~~~~~~~a~~~aDiVi~~ag~~~~~~~~~~~~~~~N~~~~~~i~~~i~~~~~~~~~viv~snp~ 134 (332)
+.++++.+++++||+||.+.. + +.+..+.+.+.+..+.+++. ++++|..
T Consensus 73 ~~~~d~~~a~~~aDlVieavp-------e-------~~~~k~~~~~~l~~~~~~~~--ii~sntS 121 (287)
T PRK08293 73 TLTTDLAEAVKDADLVIEAVP-------E-------DPEIKGDFYEELAKVAPEKT--IFATNSS 121 (287)
T ss_pred EEeCCHHHHhcCCCEEEEecc-------C-------CHHHHHHHHHHHHhhCCCCC--EEEECcc
Confidence 667788888999999998742 0 12334555666666664554 3345543
|
|
| >TIGR02415 23BDH acetoin reductases | Back alignment and domain information |
|---|
Probab=98.04 E-value=6.1e-05 Score=67.02 Aligned_cols=155 Identities=18% Similarity=0.172 Sum_probs=84.6
Q ss_pred cEEEEEcCCChhHHHHHHHHHhcccCCCCCCeEEEEEecccchhhhhhhHhhhhhhc--c-CCccceEEeCCHHHH----
Q 019990 6 LRVLVTGAAGQIGYALVPMIARGIMLGPDQPVILHMLDIEPAAEALNGVKMELIDAA--F-PLLKGVVATTDVVEA---- 78 (332)
Q Consensus 6 ~kI~VtGaaG~IGs~l~~~L~~~~~~~~~~~~~i~l~D~~~~~~~~~~~~~dl~~~~--~-~~~~~v~~~~~~~~a---- 78 (332)
++++||||+|+||.+++..|++.|. ++++++.+. +.+.....++.... . ....|+....++.++
T Consensus 1 k~~lItG~sg~iG~~la~~l~~~G~-------~v~~~~r~~--~~~~~~~~~l~~~~~~~~~~~~Dl~~~~~i~~~~~~~ 71 (254)
T TIGR02415 1 KVALVTGGAQGIGKGIAERLAKDGF-------AVAVADLNE--ETAKETAKEINQAGGKAVAYKLDVSDKDQVFSAIDQA 71 (254)
T ss_pred CEEEEeCCCchHHHHHHHHHHHCCC-------EEEEEeCCH--HHHHHHHHHHHhcCCeEEEEEcCCCCHHHHHHHHHHH
Confidence 3689999999999999999998875 788888753 22222222232211 0 112344333333333
Q ss_pred ---hCCCcEEEEecCCCCC-C--CCChh---HHHhhhHHHHHHH----HHHHHhhcCCCcEEEEEeCChhhHHHHHHHHC
Q 019990 79 ---CKDVNIAVMVGGFPRK-E--GMERK---DVMSKNVSIYKAQ----ASALEKHAAPNCKVLVVANPANTNALILKEFA 145 (332)
Q Consensus 79 ---~~~aDiVi~~ag~~~~-~--~~~~~---~~~~~N~~~~~~i----~~~i~~~~~~~~~viv~snp~~~~~~~~~~~~ 145 (332)
+...|+|||.+|.... + +.+.. ..+..|+.....+ ...+.+.. ...+++++|+-...
T Consensus 72 ~~~~~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~-~~~~iv~~sS~~~~--------- 141 (254)
T TIGR02415 72 AEKFGGFDVMVNNAGVAPITPILEITEEELKKVYNVNVKGVLFGIQAAARQFKKQG-HGGKIINAASIAGH--------- 141 (254)
T ss_pred HHHcCCCCEEEECCCcCCCCCcccCCHHHHHHHHhhhhHHHHHHHHHHHHHHHhCC-CCeEEEEecchhhc---------
Confidence 2357999999986321 1 22222 2456676554433 34444332 23466655542111
Q ss_pred CCCCCCcEEEeecccHHHHHHHHHHHcCCCCCCeee
Q 019990 146 PSIPAKNITCLTRLDHNRAMGQISERLKVHVSDVKN 181 (332)
Q Consensus 146 ~~~~~~~i~~~t~l~~~r~~~~~a~~~~v~~~~v~~ 181 (332)
.+.+....|+.++.....+...+++.+. +..++.
T Consensus 142 ~~~~~~~~Y~~sK~a~~~~~~~l~~~~~--~~~i~v 175 (254)
T TIGR02415 142 EGNPILSAYSSTKFAVRGLTQTAAQELA--PKGITV 175 (254)
T ss_pred CCCCCCcchHHHHHHHHHHHHHHHHHhc--ccCeEE
Confidence 1222233567777777777777777654 334553
|
One member of this family, as characterized in Klebsiella terrigena, is described as able to interconvert acetoin + NADH with meso-2,3-butanediol + NAD(+). It is also called capable of irreversible reduction of diacetyl with NADH to acetoin. Blomqvist, et al. decline to specify either EC 1.1.1.4 which is (R,R)-butanediol dehydrogenase, or EC 1.1.1.5, which is acetoin dehydrogenase without a specified stereochemistry, for this enzyme. This enzyme is a homotetramer in the family of short chain dehydrogenases (pfam00106). Another member of this family, from Corynebacterium glutamicum, is called L-2,3-butanediol dehydrogenase (PubMed:11577733). |
| >PRK12367 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=98.00 E-value=5.3e-05 Score=67.59 Aligned_cols=104 Identities=12% Similarity=0.030 Sum_probs=63.3
Q ss_pred CcEEEEEcCCChhHHHHHHHHHhcccCCCCCCeEEEEEecccchhhhhhhHhhhhhhccCCccceEEeCCHHHHhCCCcE
Q 019990 5 PLRVLVTGAAGQIGYALVPMIARGIMLGPDQPVILHMLDIEPAAEALNGVKMELIDAAFPLLKGVVATTDVVEACKDVNI 84 (332)
Q Consensus 5 ~~kI~VtGaaG~IGs~l~~~L~~~~~~~~~~~~~i~l~D~~~~~~~~~~~~~dl~~~~~~~~~~v~~~~~~~~a~~~aDi 84 (332)
.++++||||+|+||++++..|++.|. ++.+++++.. +... . ...........|++...++.+.+...|+
T Consensus 14 ~k~~lITGas~gIG~ala~~l~~~G~-------~Vi~~~r~~~-~~~~-~--~~~~~~~~~~~D~~~~~~~~~~~~~iDi 82 (245)
T PRK12367 14 GKRIGITGASGALGKALTKAFRAKGA-------KVIGLTHSKI-NNSE-S--NDESPNEWIKWECGKEESLDKQLASLDV 82 (245)
T ss_pred CCEEEEEcCCcHHHHHHHHHHHHCCC-------EEEEEECCch-hhhh-h--hccCCCeEEEeeCCCHHHHHHhcCCCCE
Confidence 46899999999999999999998885 7888887531 1111 0 0000000111233333344555678999
Q ss_pred EEEecCCCCCCCCCh---hHHHhhhHHHHHHHHHHHHh
Q 019990 85 AVMVGGFPRKEGMER---KDVMSKNVSIYKAQASALEK 119 (332)
Q Consensus 85 Vi~~ag~~~~~~~~~---~~~~~~N~~~~~~i~~~i~~ 119 (332)
+|+.||.......+. .+.++.|+.....+++.+..
T Consensus 83 lVnnAG~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~ 120 (245)
T PRK12367 83 LILNHGINPGGRQDPENINKALEINALSSWRLLELFED 120 (245)
T ss_pred EEECCccCCcCCCCHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 999998743222222 33567787766666655443
|
|
| >PLN02353 probable UDP-glucose 6-dehydrogenase | Back alignment and domain information |
|---|
Probab=97.99 E-value=0.00016 Score=70.34 Aligned_cols=121 Identities=15% Similarity=0.195 Sum_probs=73.4
Q ss_pred CcEEEEEcCCChhHHHHHHHHHhcccCCCCCCeEEEEEecccchhhhhhhHhhh--------hhhccC-CccceEEeCCH
Q 019990 5 PLRVLVTGAAGQIGYALVPMIARGIMLGPDQPVILHMLDIEPAAEALNGVKMEL--------IDAAFP-LLKGVVATTDV 75 (332)
Q Consensus 5 ~~kI~VtGaaG~IGs~l~~~L~~~~~~~~~~~~~i~l~D~~~~~~~~~~~~~dl--------~~~~~~-~~~~v~~~~~~ 75 (332)
||||+|+| +|++|..++..|...|. + .+|+.+|++. ++........ .+.... ..+.+..+++.
T Consensus 1 ~m~I~ViG-~GyvGl~~A~~lA~~g~-g----~~V~gvD~~~--~~v~~l~~g~~~~~e~gl~ell~~~~~~~l~~t~~~ 72 (473)
T PLN02353 1 MVKICCIG-AGYVGGPTMAVIALKCP-D----IEVVVVDISV--PRIDAWNSDQLPIYEPGLDEVVKQCRGKNLFFSTDV 72 (473)
T ss_pred CCEEEEEC-CCHHHHHHHHHHHhcCC-C----CeEEEEECCH--HHHHHHHcCCCccCCCCHHHHHHHhhcCCEEEEcCH
Confidence 57899999 79999999999998642 1 2799999864 2332211110 000000 01247777888
Q ss_pred HHHhCCCcEEEEecCCCCCCCC-ChhHHHhhhHHHHHHHHHHHHhhcCCCcEEEEEe-CChh
Q 019990 76 VEACKDVNIAVMVGGFPRKEGM-ERKDVMSKNVSIYKAQASALEKHAAPNCKVLVVA-NPAN 135 (332)
Q Consensus 76 ~~a~~~aDiVi~~ag~~~~~~~-~~~~~~~~N~~~~~~i~~~i~~~~~~~~~viv~s-np~~ 135 (332)
.+++++||++|++.+.|..... +. + ...+...+...++.+.++.+++..|++-| -|+.
T Consensus 73 ~~~i~~advi~I~V~TP~~~~g~~~-~-~~~Dls~v~~a~~~i~~~l~~~~lVv~~STvp~G 132 (473)
T PLN02353 73 EKHVAEADIVFVSVNTPTKTRGLGA-G-KAADLTYWESAARMIADVSKSDKIVVEKSTVPVK 132 (473)
T ss_pred HHHHhcCCEEEEEeCCCCCCCCCcC-C-CCCcHHHHHHHHHHHHhhCCCCcEEEEeCCCCCC
Confidence 8889999999999988764211 00 0 12345566777777777753333434333 3554
|
|
| >PRK06953 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=97.98 E-value=4.7e-05 Score=66.52 Aligned_cols=148 Identities=19% Similarity=0.117 Sum_probs=82.0
Q ss_pred CcEEEEEcCCChhHHHHHHHHHhcccCCCCCCeEEEEEecccchhhhhhhHhhhhhhcc-CCccceEEeCCHHHH---hC
Q 019990 5 PLRVLVTGAAGQIGYALVPMIARGIMLGPDQPVILHMLDIEPAAEALNGVKMELIDAAF-PLLKGVVATTDVVEA---CK 80 (332)
Q Consensus 5 ~~kI~VtGaaG~IGs~l~~~L~~~~~~~~~~~~~i~l~D~~~~~~~~~~~~~dl~~~~~-~~~~~v~~~~~~~~a---~~ 80 (332)
|++++||||+|+||++++..|++.|. ++++++++. +.+. ++..... ....|+....++.+. +.
T Consensus 1 ~~~vlvtG~sg~iG~~la~~L~~~G~-------~v~~~~r~~--~~~~----~~~~~~~~~~~~D~~~~~~v~~~~~~~~ 67 (222)
T PRK06953 1 MKTVLIVGASRGIGREFVRQYRADGW-------RVIATARDA--AALA----ALQALGAEALALDVADPASVAGLAWKLD 67 (222)
T ss_pred CceEEEEcCCCchhHHHHHHHHhCCC-------EEEEEECCH--HHHH----HHHhccceEEEecCCCHHHHHHHHHHhc
Confidence 35799999999999999999998775 789998753 1221 1211111 112344433333332 33
Q ss_pred --CCcEEEEecCCCCC---C--CCCh---hHHHhhhHHHHHHHHHHHHhhc-CCCcEEEEEeCChhhHHHHHHHHCCCCC
Q 019990 81 --DVNIAVMVGGFPRK---E--GMER---KDVMSKNVSIYKAQASALEKHA-APNCKVLVVANPANTNALILKEFAPSIP 149 (332)
Q Consensus 81 --~aDiVi~~ag~~~~---~--~~~~---~~~~~~N~~~~~~i~~~i~~~~-~~~~~viv~snp~~~~~~~~~~~~~~~~ 149 (332)
..|+|||++|.... + ..+. ...++.|+.....+++.+.++- .....++++++...... . ....
T Consensus 68 ~~~~d~vi~~ag~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~g~iv~isS~~~~~~----~--~~~~ 141 (222)
T PRK06953 68 GEALDAAVYVAGVYGPRTEGVEPITREDFDAVMHTNVLGPMQLLPILLPLVEAAGGVLAVLSSRMGSIG----D--ATGT 141 (222)
T ss_pred CCCCCEEEECCCcccCCCCCcccCCHHHHHHHHhhhhhhHHHHHHHHHHhhhccCCeEEEEcCcccccc----c--ccCC
Confidence 47999999987421 1 1122 2356778887777777776532 11235555554322110 0 0111
Q ss_pred CCcEEEeecccHHHHHHHHHHH
Q 019990 150 AKNITCLTRLDHNRAMGQISER 171 (332)
Q Consensus 150 ~~~i~~~t~l~~~r~~~~~a~~ 171 (332)
+...|+.++.....+...++..
T Consensus 142 ~~~~Y~~sK~a~~~~~~~~~~~ 163 (222)
T PRK06953 142 TGWLYRASKAALNDALRAASLQ 163 (222)
T ss_pred CccccHHhHHHHHHHHHHHhhh
Confidence 1124677777666665555544
|
|
| >PRK07677 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=97.97 E-value=0.00013 Score=64.99 Aligned_cols=157 Identities=11% Similarity=0.045 Sum_probs=87.7
Q ss_pred cEEEEEcCCChhHHHHHHHHHhcccCCCCCCeEEEEEecccchhhhhhhHhhhhhhc--c-CCccceEEeCCHHHH----
Q 019990 6 LRVLVTGAAGQIGYALVPMIARGIMLGPDQPVILHMLDIEPAAEALNGVKMELIDAA--F-PLLKGVVATTDVVEA---- 78 (332)
Q Consensus 6 ~kI~VtGaaG~IGs~l~~~L~~~~~~~~~~~~~i~l~D~~~~~~~~~~~~~dl~~~~--~-~~~~~v~~~~~~~~a---- 78 (332)
++++||||+|.||++++..|++.|. .|++.+++. +.+.....++.... . ....|++...++.+.
T Consensus 2 k~~lItG~s~giG~~ia~~l~~~G~-------~Vi~~~r~~--~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~ 72 (252)
T PRK07677 2 KVVIITGGSSGMGKAMAKRFAEEGA-------NVVITGRTK--EKLEEAKLEIEQFPGQVLTVQMDVRNPEDVQKMVEQI 72 (252)
T ss_pred CEEEEeCCCChHHHHHHHHHHHCCC-------EEEEEeCCH--HHHHHHHHHHHhcCCcEEEEEecCCCHHHHHHHHHHH
Confidence 5799999999999999999998875 788888753 22332222232110 0 111233333233222
Q ss_pred ---hCCCcEEEEecCCCCC---CCCCh---hHHHhhhHHHHHHHHHHHHhh--c-CCCcEEEEEeCChhhHHHHHHHHCC
Q 019990 79 ---CKDVNIAVMVGGFPRK---EGMER---KDVMSKNVSIYKAQASALEKH--A-APNCKVLVVANPANTNALILKEFAP 146 (332)
Q Consensus 79 ---~~~aDiVi~~ag~~~~---~~~~~---~~~~~~N~~~~~~i~~~i~~~--~-~~~~~viv~snp~~~~~~~~~~~~~ 146 (332)
+...|+|||.+|.... ...+. ...++.|......+.+++.++ . ...+.++++|+-.. . .
T Consensus 73 ~~~~~~id~lI~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~g~ii~isS~~~-------~--~ 143 (252)
T PRK07677 73 DEKFGRIDALINNAAGNFICPAEDLSVNGWNSVIDIVLNGTFYCSQAVGKYWIEKGIKGNIINMVATYA-------W--D 143 (252)
T ss_pred HHHhCCccEEEECCCCCCCCCcccCCHHHHHHHHhHhhHHHHHHHHHHHHHHHhcCCCEEEEEEcChhh-------c--c
Confidence 2367999999985321 12222 234677776666666666432 1 12356666664211 0 1
Q ss_pred CCCCCcEEEeecccHHHHHHHHHHHcCCCCCCeee
Q 019990 147 SIPAKNITCLTRLDHNRAMGQISERLKVHVSDVKN 181 (332)
Q Consensus 147 ~~~~~~i~~~t~l~~~r~~~~~a~~~~v~~~~v~~ 181 (332)
..+....|+.++.....+.+.+++.+.- ...++.
T Consensus 144 ~~~~~~~Y~~sKaa~~~~~~~la~e~~~-~~gi~v 177 (252)
T PRK07677 144 AGPGVIHSAAAKAGVLAMTRTLAVEWGR-KYGIRV 177 (252)
T ss_pred CCCCCcchHHHHHHHHHHHHHHHHHhCc-ccCeEE
Confidence 1111224677777777777777777642 234553
|
|
| >PRK12748 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=97.97 E-value=4.2e-05 Score=68.32 Aligned_cols=156 Identities=15% Similarity=0.123 Sum_probs=86.0
Q ss_pred CCCCCcEEEEEcCCC--hhHHHHHHHHHhcccCCCCCCeEEEEEecccc----------hhhhhhhHhhhhhhc--c-CC
Q 019990 1 MAKNPLRVLVTGAAG--QIGYALVPMIARGIMLGPDQPVILHMLDIEPA----------AEALNGVKMELIDAA--F-PL 65 (332)
Q Consensus 1 m~~~~~kI~VtGaaG--~IGs~l~~~L~~~~~~~~~~~~~i~l~D~~~~----------~~~~~~~~~dl~~~~--~-~~ 65 (332)
|+.++++|+||||+| .||++++..|+..|. +|.+++++.. .+... ...++.... . ..
T Consensus 1 ~~l~~k~vlItGas~~~giG~~la~~l~~~G~-------~vi~~~r~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~ 72 (256)
T PRK12748 1 LPLMKKIALVTGASRLNGIGAAVCRRLAAKGI-------DIFFTYWSPYDKTMPWGMHDKEPVL-LKEEIESYGVRCEHM 72 (256)
T ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHHHHHcCC-------cEEEEcCCccccccccccchhhHHH-HHHHHHhcCCeEEEE
Confidence 566677899999985 699999999998875 7888876511 01110 111221100 0 11
Q ss_pred ccceEEeCCHHHH-------hCCCcEEEEecCCCCC-C--CCCh---hHHHhhhHHHHHHHHHHHHhhcC--CCcEEEEE
Q 019990 66 LKGVVATTDVVEA-------CKDVNIAVMVGGFPRK-E--GMER---KDVMSKNVSIYKAQASALEKHAA--PNCKVLVV 130 (332)
Q Consensus 66 ~~~v~~~~~~~~a-------~~~aDiVi~~ag~~~~-~--~~~~---~~~~~~N~~~~~~i~~~i~~~~~--~~~~viv~ 130 (332)
..|+....++.++ +...|+|||+||.... + ..+. ...+..|+.....+.+++..... +..+++++
T Consensus 73 ~~D~~~~~~~~~~~~~~~~~~g~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~iv~~ 152 (256)
T PRK12748 73 EIDLSQPYAPNRVFYAVSERLGDPSILINNAAYSTHTRLEELTAEQLDKHYAVNVRATMLLSSAFAKQYDGKAGGRIINL 152 (256)
T ss_pred ECCCCCHHHHHHHHHHHHHhCCCCCEEEECCCcCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHhhhcCCeEEEEE
Confidence 1233332232222 2357999999986321 1 1111 23467787777777776654311 23466666
Q ss_pred eCChhhHHHHHHHHCCCCCCCcEEEeecccHHHHHHHHHHHcC
Q 019990 131 ANPANTNALILKEFAPSIPAKNITCLTRLDHNRAMGQISERLK 173 (332)
Q Consensus 131 snp~~~~~~~~~~~~~~~~~~~i~~~t~l~~~r~~~~~a~~~~ 173 (332)
|+-.. + .+.+....|+.++.....+...+++.+.
T Consensus 153 ss~~~--------~-~~~~~~~~Y~~sK~a~~~~~~~la~e~~ 186 (256)
T PRK12748 153 TSGQS--------L-GPMPDELAYAATKGAIEAFTKSLAPELA 186 (256)
T ss_pred CCccc--------c-CCCCCchHHHHHHHHHHHHHHHHHHHHH
Confidence 64211 0 1122223467777777777777777654
|
|
| >PRK06483 dihydromonapterin reductase; Provisional | Back alignment and domain information |
|---|
Probab=97.96 E-value=5.2e-05 Score=66.81 Aligned_cols=148 Identities=11% Similarity=0.042 Sum_probs=83.0
Q ss_pred CcEEEEEcCCChhHHHHHHHHHhcccCCCCCCeEEEEEecccchhhhhhhHhhhhhhcc-CCccceEEeCCHHHH-----
Q 019990 5 PLRVLVTGAAGQIGYALVPMIARGIMLGPDQPVILHMLDIEPAAEALNGVKMELIDAAF-PLLKGVVATTDVVEA----- 78 (332)
Q Consensus 5 ~~kI~VtGaaG~IGs~l~~~L~~~~~~~~~~~~~i~l~D~~~~~~~~~~~~~dl~~~~~-~~~~~v~~~~~~~~a----- 78 (332)
+++++||||+|.||++++..|++.|. +|.+.+++... . ..++..... ....|+....++.+.
T Consensus 2 ~k~vlItGas~gIG~~ia~~l~~~G~-------~V~~~~r~~~~--~---~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~ 69 (236)
T PRK06483 2 PAPILITGAGQRIGLALAWHLLAQGQ-------PVIVSYRTHYP--A---IDGLRQAGAQCIQADFSTNAGIMAFIDELK 69 (236)
T ss_pred CceEEEECCCChHHHHHHHHHHHCCC-------eEEEEeCCchh--H---HHHHHHcCCEEEEcCCCCHHHHHHHHHHHH
Confidence 35799999999999999999998875 78888875421 1 112211111 112344333332222
Q ss_pred --hCCCcEEEEecCCCCC--C-CCChh---HHHhhhHHHHHHH----HHHHHhhcCCCcEEEEEeCChhhHHHHHHHHCC
Q 019990 79 --CKDVNIAVMVGGFPRK--E-GMERK---DVMSKNVSIYKAQ----ASALEKHAAPNCKVLVVANPANTNALILKEFAP 146 (332)
Q Consensus 79 --~~~aDiVi~~ag~~~~--~-~~~~~---~~~~~N~~~~~~i----~~~i~~~~~~~~~viv~snp~~~~~~~~~~~~~ 146 (332)
+...|++||.||.... . ..+.+ ..+..|+.....+ .+.+++.......+++++.... . .
T Consensus 70 ~~~~~id~lv~~ag~~~~~~~~~~~~~~~~~~~~vn~~~~~~l~~~~~~~~~~~~~~~g~iv~~ss~~~-------~--~ 140 (236)
T PRK06483 70 QHTDGLRAIIHNASDWLAEKPGAPLADVLARMMQIHVNAPYLLNLALEDLLRGHGHAASDIIHITDYVV-------E--K 140 (236)
T ss_pred hhCCCccEEEECCccccCCCcCccCHHHHHHHHHHcchHHHHHHHHHHHHHHhCCCCCceEEEEcchhh-------c--c
Confidence 2348999999986321 1 11222 2445565544433 3333332101245566554211 1 1
Q ss_pred CCCCCcEEEeecccHHHHHHHHHHHcC
Q 019990 147 SIPAKNITCLTRLDHNRAMGQISERLK 173 (332)
Q Consensus 147 ~~~~~~i~~~t~l~~~r~~~~~a~~~~ 173 (332)
+.+....|+.+|..-..+.+.+++.++
T Consensus 141 ~~~~~~~Y~asKaal~~l~~~~a~e~~ 167 (236)
T PRK06483 141 GSDKHIAYAASKAALDNMTLSFAAKLA 167 (236)
T ss_pred CCCCCccHHHHHHHHHHHHHHHHHHHC
Confidence 233334678888888888888888875
|
|
| >PF01210 NAD_Gly3P_dh_N: NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus; InterPro: IPR011128 NAD-dependent glycerol-3-phosphate dehydrogenase (GPDH) catalyses the interconversion of dihydroxyacetone phosphate and L-glycerol-3-phosphate | Back alignment and domain information |
|---|
Probab=97.96 E-value=5e-05 Score=62.96 Aligned_cols=93 Identities=23% Similarity=0.301 Sum_probs=60.9
Q ss_pred EEEEEcCCChhHHHHHHHHHhcccCCCCCCeEEEEEecccchhhhhhhHhhhhh--hcc------CCccceEEeCCHHHH
Q 019990 7 RVLVTGAAGQIGYALVPMIARGIMLGPDQPVILHMLDIEPAAEALNGVKMELID--AAF------PLLKGVVATTDVVEA 78 (332)
Q Consensus 7 kI~VtGaaG~IGs~l~~~L~~~~~~~~~~~~~i~l~D~~~~~~~~~~~~~dl~~--~~~------~~~~~v~~~~~~~~a 78 (332)
||+|+| +|..|.+++..|..++. +|.|++++. +.++ ++.+ ... .+..++..++|+.++
T Consensus 1 KI~ViG-aG~~G~AlA~~la~~g~-------~V~l~~~~~--~~~~----~i~~~~~n~~~~~~~~l~~~i~~t~dl~~a 66 (157)
T PF01210_consen 1 KIAVIG-AGNWGTALAALLADNGH-------EVTLWGRDE--EQIE----EINETRQNPKYLPGIKLPENIKATTDLEEA 66 (157)
T ss_dssp EEEEES-SSHHHHHHHHHHHHCTE-------EEEEETSCH--HHHH----HHHHHTSETTTSTTSBEETTEEEESSHHHH
T ss_pred CEEEEC-cCHHHHHHHHHHHHcCC-------EEEEEeccH--HHHH----HHHHhCCCCCCCCCcccCcccccccCHHHH
Confidence 799999 69999999999999886 999999863 2222 2222 111 123467778899999
Q ss_pred hCCCcEEEEecCCCCCCCCChhHHHhhhHHHHHHHHHHHHhhcCCCcEEEE
Q 019990 79 CKDVNIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEKHAAPNCKVLV 129 (332)
Q Consensus 79 ~~~aDiVi~~ag~~~~~~~~~~~~~~~N~~~~~~i~~~i~~~~~~~~~viv 129 (332)
++++|+|+++. | ....+++++.++.+-.++..+++
T Consensus 67 ~~~ad~Iiiav--P--------------s~~~~~~~~~l~~~l~~~~~ii~ 101 (157)
T PF01210_consen 67 LEDADIIIIAV--P--------------SQAHREVLEQLAPYLKKGQIIIS 101 (157)
T ss_dssp HTT-SEEEE-S-----------------GGGHHHHHHHHTTTSHTT-EEEE
T ss_pred hCcccEEEecc--c--------------HHHHHHHHHHHhhccCCCCEEEE
Confidence 99999999862 1 12235667777776533334343
|
This family represents the N-terminal NAD-binding domain [].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0046168 glycerol-3-phosphate catabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 1YJ8_B 2PLA_A 1WPQ_B 1X0V_A 1X0X_A 1BG6_A 1TXG_B 1N1G_A 1M67_A 1JDJ_A .... |
| >COG2910 Putative NADH-flavin reductase [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.96 E-value=7.5e-05 Score=62.26 Aligned_cols=104 Identities=14% Similarity=0.155 Sum_probs=68.6
Q ss_pred cEEEEEcCCChhHHHHHHHHHhcccCCCCCCeEEEEEecccchhhhhhhHhhhhhhccCCccceEEeCCHHHHhCCCcEE
Q 019990 6 LRVLVTGAAGQIGYALVPMIARGIMLGPDQPVILHMLDIEPAAEALNGVKMELIDAAFPLLKGVVATTDVVEACKDVNIA 85 (332)
Q Consensus 6 ~kI~VtGaaG~IGs~l~~~L~~~~~~~~~~~~~i~l~D~~~~~~~~~~~~~dl~~~~~~~~~~v~~~~~~~~a~~~aDiV 85 (332)
|||+|+||+|.+|+.++...+..|+ +++.+-++.. ++.. ++.. .....|+...+.+.+++.+.|+|
T Consensus 1 mKIaiIgAsG~~Gs~i~~EA~~RGH-------eVTAivRn~~--K~~~----~~~~-~i~q~Difd~~~~a~~l~g~DaV 66 (211)
T COG2910 1 MKIAIIGASGKAGSRILKEALKRGH-------EVTAIVRNAS--KLAA----RQGV-TILQKDIFDLTSLASDLAGHDAV 66 (211)
T ss_pred CeEEEEecCchhHHHHHHHHHhCCC-------eeEEEEeChH--hccc----cccc-eeecccccChhhhHhhhcCCceE
Confidence 6899999999999999999999887 8888877542 2221 1110 11234666666666889999999
Q ss_pred EEecCCCCCCCCChhHHHhhhHHHHHHHHHHHHhhcCCCcEEEEEe
Q 019990 86 VMVGGFPRKEGMERKDVMSKNVSIYKAQASALEKHAAPNCKVLVVA 131 (332)
Q Consensus 86 i~~ag~~~~~~~~~~~~~~~N~~~~~~i~~~i~~~~~~~~~viv~s 131 (332)
|-..|..... . +... .+....+...++..+ ..++++++
T Consensus 67 IsA~~~~~~~-~--~~~~---~k~~~~li~~l~~ag--v~RllVVG 104 (211)
T COG2910 67 ISAFGAGASD-N--DELH---SKSIEALIEALKGAG--VPRLLVVG 104 (211)
T ss_pred EEeccCCCCC-h--hHHH---HHHHHHHHHHHhhcC--CeeEEEEc
Confidence 9987765321 1 1122 233566677777765 34777776
|
|
| >PRK08261 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=97.94 E-value=6.7e-05 Score=72.93 Aligned_cols=151 Identities=21% Similarity=0.198 Sum_probs=85.0
Q ss_pred CcEEEEEcCCChhHHHHHHHHHhcccCCCCCCeEEEEEecccchhhhhhhHhhhhhhccCCccceEEeCCHHHH------
Q 019990 5 PLRVLVTGAAGQIGYALVPMIARGIMLGPDQPVILHMLDIEPAAEALNGVKMELIDAAFPLLKGVVATTDVVEA------ 78 (332)
Q Consensus 5 ~~kI~VtGaaG~IGs~l~~~L~~~~~~~~~~~~~i~l~D~~~~~~~~~~~~~dl~~~~~~~~~~v~~~~~~~~a------ 78 (332)
.++++||||+|.||..++..|.+.+. +++++|.....+.+.....++.. .....|++...++.+.
T Consensus 210 g~~vlItGasggIG~~la~~l~~~Ga-------~vi~~~~~~~~~~l~~~~~~~~~--~~~~~Dv~~~~~~~~~~~~~~~ 280 (450)
T PRK08261 210 GKVALVTGAARGIGAAIAEVLARDGA-------HVVCLDVPAAGEALAAVANRVGG--TALALDITAPDAPARIAEHLAE 280 (450)
T ss_pred CCEEEEecCCCHHHHHHHHHHHHCCC-------EEEEEeCCccHHHHHHHHHHcCC--eEEEEeCCCHHHHHHHHHHHHH
Confidence 46899999999999999999998875 78888874322222221111110 0111233322222222
Q ss_pred -hCCCcEEEEecCCCCCC---CCCh---hHHHhhhHHHHHHHHHHHHhh--cCCCcEEEEEeCChhhHHHHHHHHCCCCC
Q 019990 79 -CKDVNIAVMVGGFPRKE---GMER---KDVMSKNVSIYKAQASALEKH--AAPNCKVLVVANPANTNALILKEFAPSIP 149 (332)
Q Consensus 79 -~~~aDiVi~~ag~~~~~---~~~~---~~~~~~N~~~~~~i~~~i~~~--~~~~~~viv~snp~~~~~~~~~~~~~~~~ 149 (332)
....|+|||.||..... ..+. ...+..|+.....+.+.+... ..+..+++++|+.... .+.+
T Consensus 281 ~~g~id~vi~~AG~~~~~~~~~~~~~~~~~~~~~n~~g~~~l~~~~~~~~~~~~~g~iv~~SS~~~~---------~g~~ 351 (450)
T PRK08261 281 RHGGLDIVVHNAGITRDKTLANMDEARWDSVLAVNLLAPLRITEALLAAGALGDGGRIVGVSSISGI---------AGNR 351 (450)
T ss_pred hCCCCCEEEECCCcCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHhhhhcCCCEEEEECChhhc---------CCCC
Confidence 22579999999975321 1122 235677888888888877652 1233567777753211 1122
Q ss_pred CCcEEEeecccHHHHHHHHHHHcC
Q 019990 150 AKNITCLTRLDHNRAMGQISERLK 173 (332)
Q Consensus 150 ~~~i~~~t~l~~~r~~~~~a~~~~ 173 (332)
....|+.++.....+...++..+.
T Consensus 352 ~~~~Y~asKaal~~~~~~la~el~ 375 (450)
T PRK08261 352 GQTNYAASKAGVIGLVQALAPLLA 375 (450)
T ss_pred CChHHHHHHHHHHHHHHHHHHHHh
Confidence 222455566555556666666543
|
|
| >PRK06940 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=97.93 E-value=0.00012 Score=66.44 Aligned_cols=161 Identities=16% Similarity=0.121 Sum_probs=87.0
Q ss_pred EEEEEcCCChhHHHHHHHHHhcccCCCCCCeEEEEEecccchhhhhhhHhhhhhhc--c-CCccceEEeCCHHHHh----
Q 019990 7 RVLVTGAAGQIGYALVPMIARGIMLGPDQPVILHMLDIEPAAEALNGVKMELIDAA--F-PLLKGVVATTDVVEAC---- 79 (332)
Q Consensus 7 kI~VtGaaG~IGs~l~~~L~~~~~~~~~~~~~i~l~D~~~~~~~~~~~~~dl~~~~--~-~~~~~v~~~~~~~~a~---- 79 (332)
.++|||| |+||++++..|. .|. +|++.|++. +.+.....++.... . .+..|+....++.+++
T Consensus 4 ~~lItGa-~gIG~~la~~l~-~G~-------~Vv~~~r~~--~~~~~~~~~l~~~~~~~~~~~~Dv~d~~~i~~~~~~~~ 72 (275)
T PRK06940 4 VVVVIGA-GGIGQAIARRVG-AGK-------KVLLADYNE--ENLEAAAKTLREAGFDVSTQEVDVSSRESVKALAATAQ 72 (275)
T ss_pred EEEEECC-ChHHHHHHHHHh-CCC-------EEEEEeCCH--HHHHHHHHHHHhcCCeEEEEEeecCCHHHHHHHHHHHH
Confidence 4678885 899999999985 554 899999753 22332222332211 1 1123444333333332
Q ss_pred --CCCcEEEEecCCCCCCCCChhHHHhhhHHHHHHHHHHHHhhcCCCcEEEEEeCChhhHHH-HHHH-------HC----
Q 019990 80 --KDVNIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEKHAAPNCKVLVVANPANTNAL-ILKE-------FA---- 145 (332)
Q Consensus 80 --~~aDiVi~~ag~~~~~~~~~~~~~~~N~~~~~~i~~~i~~~~~~~~~viv~snp~~~~~~-~~~~-------~~---- 145 (332)
...|++|+.||.... ..+....++.|+.....+++.+...-.++..++++++....... ...+ ..
T Consensus 73 ~~g~id~li~nAG~~~~-~~~~~~~~~vN~~g~~~l~~~~~~~m~~~g~iv~isS~~~~~~~~~~~~~~~~~~~~~~~~~ 151 (275)
T PRK06940 73 TLGPVTGLVHTAGVSPS-QASPEAILKVDLYGTALVLEEFGKVIAPGGAGVVIASQSGHRLPALTAEQERALATTPTEEL 151 (275)
T ss_pred hcCCCCEEEECCCcCCc-hhhHHHHHHHhhHHHHHHHHHHHHHHhhCCCEEEEEecccccCcccchhhhccccccccccc
Confidence 358999999997532 22334567888887777777665542122334555543221110 0000 00
Q ss_pred CCC---------CCCcEEEeecccHHHHHHHHHHHcCCCCCCeee
Q 019990 146 PSI---------PAKNITCLTRLDHNRAMGQISERLKVHVSDVKN 181 (332)
Q Consensus 146 ~~~---------~~~~i~~~t~l~~~r~~~~~a~~~~v~~~~v~~ 181 (332)
..+ +....|+.+|.....+.+.+|..++ +..||.
T Consensus 152 ~~~~~~~~~~~~~~~~~Y~asKaa~~~~~~~la~e~~--~~gIrv 194 (275)
T PRK06940 152 LSLPFLQPDAIEDSLHAYQIAKRANALRVMAEAVKWG--ERGARI 194 (275)
T ss_pred cccccccccccCCccchhHHHHHHHHHHHHHHHHHHc--cCCeEE
Confidence 000 1122577788877777777777764 455663
|
|
| >PRK05872 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=97.93 E-value=6e-05 Score=69.09 Aligned_cols=150 Identities=19% Similarity=0.188 Sum_probs=83.4
Q ss_pred CcEEEEEcCCChhHHHHHHHHHhcccCCCCCCeEEEEEecccchhhhhhhHhhhhhhc-c-CCccceEEeCCHHHH----
Q 019990 5 PLRVLVTGAAGQIGYALVPMIARGIMLGPDQPVILHMLDIEPAAEALNGVKMELIDAA-F-PLLKGVVATTDVVEA---- 78 (332)
Q Consensus 5 ~~kI~VtGaaG~IGs~l~~~L~~~~~~~~~~~~~i~l~D~~~~~~~~~~~~~dl~~~~-~-~~~~~v~~~~~~~~a---- 78 (332)
.++|+||||+|.||.+++..|.+.|. +|.+.+++. +.+.....++.... . ....|++...++.++
T Consensus 9 gk~vlItGas~gIG~~ia~~l~~~G~-------~V~~~~r~~--~~l~~~~~~l~~~~~~~~~~~Dv~d~~~v~~~~~~~ 79 (296)
T PRK05872 9 GKVVVVTGAARGIGAELARRLHARGA-------KLALVDLEE--AELAALAAELGGDDRVLTVVADVTDLAAMQAAAEEA 79 (296)
T ss_pred CCEEEEECCCchHHHHHHHHHHHCCC-------EEEEEeCCH--HHHHHHHHHhcCCCcEEEEEecCCCHHHHHHHHHHH
Confidence 46899999999999999999998885 789998753 23333222332100 0 011344333333222
Q ss_pred ---hCCCcEEEEecCCCCCC---CCCh---hHHHhhhHHHHHHHHHHHHhhc-CCCcEEEEEeCChhhHHHHHHHHCCCC
Q 019990 79 ---CKDVNIAVMVGGFPRKE---GMER---KDVMSKNVSIYKAQASALEKHA-APNCKVLVVANPANTNALILKEFAPSI 148 (332)
Q Consensus 79 ---~~~aDiVi~~ag~~~~~---~~~~---~~~~~~N~~~~~~i~~~i~~~~-~~~~~viv~snp~~~~~~~~~~~~~~~ 148 (332)
+...|+||+.||..... ..+. ...+..|+.....+.+.+..+- ...+.++++|+.... .+.
T Consensus 80 ~~~~g~id~vI~nAG~~~~~~~~~~~~~~~~~~~~vn~~g~~~l~~~~~~~~~~~~g~iv~isS~~~~---------~~~ 150 (296)
T PRK05872 80 VERFGGIDVVVANAGIASGGSVAQVDPDAFRRVIDVNLLGVFHTVRATLPALIERRGYVLQVSSLAAF---------AAA 150 (296)
T ss_pred HHHcCCCCEEEECCCcCCCcCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCEEEEEeCHhhc---------CCC
Confidence 24679999999974211 1222 2346678777766666654431 123466666652110 122
Q ss_pred CCCcEEEeecccHHHHHHHHHHHc
Q 019990 149 PAKNITCLTRLDHNRAMGQISERL 172 (332)
Q Consensus 149 ~~~~i~~~t~l~~~r~~~~~a~~~ 172 (332)
+....|+.+|.....+...++..+
T Consensus 151 ~~~~~Y~asKaal~~~~~~l~~e~ 174 (296)
T PRK05872 151 PGMAAYCASKAGVEAFANALRLEV 174 (296)
T ss_pred CCchHHHHHHHHHHHHHHHHHHHH
Confidence 222245666665556665565543
|
|
| >PRK07889 enoyl-(acyl carrier protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=97.93 E-value=0.00015 Score=65.05 Aligned_cols=159 Identities=14% Similarity=0.116 Sum_probs=86.0
Q ss_pred CCcEEEEEcC--CChhHHHHHHHHHhcccCCCCCCeEEEEEecccchhhhhhhHhhhhhhccCCccceEEeCCHHHH---
Q 019990 4 NPLRVLVTGA--AGQIGYALVPMIARGIMLGPDQPVILHMLDIEPAAEALNGVKMELIDAAFPLLKGVVATTDVVEA--- 78 (332)
Q Consensus 4 ~~~kI~VtGa--aG~IGs~l~~~L~~~~~~~~~~~~~i~l~D~~~~~~~~~~~~~dl~~~~~~~~~~v~~~~~~~~a--- 78 (332)
+.++++|||| ++.||.+++..|++.|. .|++.|++...+.++....++.........|+....+..+.
T Consensus 6 ~~k~~lItGa~~s~GIG~a~a~~la~~G~-------~v~l~~r~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~i~~~~~~ 78 (256)
T PRK07889 6 EGKRILVTGVITDSSIAFHVARVAQEQGA-------EVVLTGFGRALRLTERIAKRLPEPAPVLELDVTNEEHLASLADR 78 (256)
T ss_pred cCCEEEEeCCCCcchHHHHHHHHHHHCCC-------EEEEecCccchhHHHHHHHhcCCCCcEEeCCCCCHHHHHHHHHH
Confidence 3468999998 78999999999998885 78888864322222222222211111112344433332222
Q ss_pred ----hCCCcEEEEecCCCCC-------CCCChhH---HHhhhHHHHHHHHHHHHhhcCCCcEEEEEeCChhhHHHHHHHH
Q 019990 79 ----CKDVNIAVMVGGFPRK-------EGMERKD---VMSKNVSIYKAQASALEKHAAPNCKVLVVANPANTNALILKEF 144 (332)
Q Consensus 79 ----~~~aDiVi~~ag~~~~-------~~~~~~~---~~~~N~~~~~~i~~~i~~~~~~~~~viv~snp~~~~~~~~~~~ 144 (332)
+...|++|+.||.... ...+.++ .+..|+...-.+.+.+...-.+.+.+++++.. ..
T Consensus 79 ~~~~~g~iD~li~nAG~~~~~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~~~~m~~~g~Iv~is~~-~~-------- 149 (256)
T PRK07889 79 VREHVDGLDGVVHSIGFAPQSALGGNFLDAPWEDVATALHVSAYSLKSLAKALLPLMNEGGSIVGLDFD-AT-------- 149 (256)
T ss_pred HHHHcCCCcEEEEccccccccccCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHhcccCceEEEEeec-cc--------
Confidence 3468999999987421 1122222 35667655544444443321123455555421 10
Q ss_pred CCCCCCCcEEEeecccHHHHHHHHHHHcCCCCCCeee
Q 019990 145 APSIPAKNITCLTRLDHNRAMGQISERLKVHVSDVKN 181 (332)
Q Consensus 145 ~~~~~~~~i~~~t~l~~~r~~~~~a~~~~v~~~~v~~ 181 (332)
.+.+....|+.+|..-..+.+.++..+. +..||.
T Consensus 150 -~~~~~~~~Y~asKaal~~l~~~la~el~--~~gIrv 183 (256)
T PRK07889 150 -VAWPAYDWMGVAKAALESTNRYLARDLG--PRGIRV 183 (256)
T ss_pred -ccCCccchhHHHHHHHHHHHHHHHHHhh--hcCeEE
Confidence 0112222356778777788888888764 445664
|
|
| >TIGR01831 fabG_rel 3-oxoacyl-(acyl-carrier-protein) reductase, putative | Back alignment and domain information |
|---|
Probab=97.93 E-value=4.7e-05 Score=67.16 Aligned_cols=148 Identities=14% Similarity=0.093 Sum_probs=80.9
Q ss_pred EEEEcCCChhHHHHHHHHHhcccCCCCCCeEEEEEecccchhhhhhhHhhhhhhc--c-CCccceEEeCCHHHH------
Q 019990 8 VLVTGAAGQIGYALVPMIARGIMLGPDQPVILHMLDIEPAAEALNGVKMELIDAA--F-PLLKGVVATTDVVEA------ 78 (332)
Q Consensus 8 I~VtGaaG~IGs~l~~~L~~~~~~~~~~~~~i~l~D~~~~~~~~~~~~~dl~~~~--~-~~~~~v~~~~~~~~a------ 78 (332)
|+||||+|+||.+++..|++.|. ++++++.... +.......++.+.. . ....|+....++.++
T Consensus 1 vlItGas~giG~~~a~~l~~~G~-------~v~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~ 72 (239)
T TIGR01831 1 VLVTGASRGIGRAIANRLAADGF-------EICVHYHSGR-SDAESVVSAIQAQGGNARLLQFDVADRVACRTLLEADIA 72 (239)
T ss_pred CEEeCCCchHHHHHHHHHHHCCC-------EEEEEeCCCH-HHHHHHHHHHHHcCCeEEEEEccCCCHHHHHHHHHHHHH
Confidence 57999999999999999998875 7777775432 22222222332211 1 112333333333222
Q ss_pred -hCCCcEEEEecCCCCCC---CCCh---hHHHhhhHHHHHHHHHHHH----hhcCCCcEEEEEeCChhhHHHHHHHHCCC
Q 019990 79 -CKDVNIAVMVGGFPRKE---GMER---KDVMSKNVSIYKAQASALE----KHAAPNCKVLVVANPANTNALILKEFAPS 147 (332)
Q Consensus 79 -~~~aDiVi~~ag~~~~~---~~~~---~~~~~~N~~~~~~i~~~i~----~~~~~~~~viv~snp~~~~~~~~~~~~~~ 147 (332)
+...|.+|+.+|..... ..+. ...+..|+.....+.+++. +.. +..+++++|+.... .+
T Consensus 73 ~~~~i~~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~-~~~~iv~vsS~~~~---------~~ 142 (239)
T TIGR01831 73 EHGAYYGVVLNAGITRDAAFPALSEEDWDIVIHTNLDGFYNVIHPCTMPMIRAR-QGGRIITLASVSGV---------MG 142 (239)
T ss_pred HcCCCCEEEECCCCCCCCchhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhhc-CCeEEEEEcchhhc---------cC
Confidence 23469999999864321 1122 2356778777666665542 111 34566777654321 12
Q ss_pred CCCCcEEEeecccHHHHHHHHHHHcC
Q 019990 148 IPAKNITCLTRLDHNRAMGQISERLK 173 (332)
Q Consensus 148 ~~~~~i~~~t~l~~~r~~~~~a~~~~ 173 (332)
.+...-|+.++.....+.+.++..+.
T Consensus 143 ~~~~~~Y~~sK~a~~~~~~~la~e~~ 168 (239)
T TIGR01831 143 NRGQVNYSAAKAGLIGATKALAVELA 168 (239)
T ss_pred CCCCcchHHHHHHHHHHHHHHHHHHh
Confidence 23333566677655556666666643
|
This model represents a small, very well conserved family of proteins closely related to the FabG family, TIGR01830, and possibly equal in function. In all completed genomes with a member of this family, a FabG in TIGR01830 is also found. |
| >TIGR02685 pter_reduc_Leis pteridine reductase | Back alignment and domain information |
|---|
Probab=97.93 E-value=0.00014 Score=65.45 Aligned_cols=158 Identities=11% Similarity=0.071 Sum_probs=85.4
Q ss_pred cEEEEEcCCChhHHHHHHHHHhcccCCCCCCeEEEEEecccchhhhhhhHhhhhhh---c-cCCccceEEeCCH----HH
Q 019990 6 LRVLVTGAAGQIGYALVPMIARGIMLGPDQPVILHMLDIEPAAEALNGVKMELIDA---A-FPLLKGVVATTDV----VE 77 (332)
Q Consensus 6 ~kI~VtGaaG~IGs~l~~~L~~~~~~~~~~~~~i~l~D~~~~~~~~~~~~~dl~~~---~-~~~~~~v~~~~~~----~~ 77 (332)
..++||||+|+||++++..|++.|. +|++.+.+. .+.+.....++... . ..+..|+.....+ .+
T Consensus 2 ~~~lITGas~gIG~~~a~~l~~~G~-------~V~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~~Dv~d~~~~~~~~~~ 73 (267)
T TIGR02685 2 PAAVVTGAAKRIGSSIAVALHQEGY-------RVVLHYHRS-AAAASTLAAELNARRPNSAVTCQADLSNSATLFSRCEA 73 (267)
T ss_pred CEEEEeCCCCcHHHHHHHHHHhCCC-------eEEEEcCCc-HHHHHHHHHHHHhccCCceEEEEccCCCchhhHHHHHH
Confidence 3689999999999999999999885 777765432 12333333333211 0 0112344443322 11
Q ss_pred -------HhCCCcEEEEecCCCCC-----CCCC------------hhHHHhhhHHHHHHHHHHHHhhcC--------CCc
Q 019990 78 -------ACKDVNIAVMVGGFPRK-----EGME------------RKDVMSKNVSIYKAQASALEKHAA--------PNC 125 (332)
Q Consensus 78 -------a~~~aDiVi~~ag~~~~-----~~~~------------~~~~~~~N~~~~~~i~~~i~~~~~--------~~~ 125 (332)
.+...|+|||.||.... ...+ -.+.+..|......+.+.+..... ...
T Consensus 74 ~~~~~~~~~g~iD~lv~nAG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~~~~~~~~~ 153 (267)
T TIGR02685 74 IIDACFRAFGRCDVLVNNASAFYPTPLLRGDAGEGVGDKKSLEVQVAELFGSNAIAPYFLIKAFAQRQAGTRAEQRSTNL 153 (267)
T ss_pred HHHHHHHccCCceEEEECCccCCCCcccccccccccccchhhHHHHHHHHHhhhHHHHHHHHHHHHHhhhcccccCCCCe
Confidence 12468999999986321 0010 123466776555444444332210 112
Q ss_pred EEEEEeCChhhHHHHHHHHCCCCCCCcEEEeecccHHHHHHHHHHHcCCCCCCeeee
Q 019990 126 KVLVVANPANTNALILKEFAPSIPAKNITCLTRLDHNRAMGQISERLKVHVSDVKNV 182 (332)
Q Consensus 126 ~viv~snp~~~~~~~~~~~~~~~~~~~i~~~t~l~~~r~~~~~a~~~~v~~~~v~~~ 182 (332)
.++.+++.... ...+....|+.+|.....+...++..++ +..++..
T Consensus 154 ~iv~~~s~~~~---------~~~~~~~~Y~asK~a~~~~~~~la~e~~--~~gi~v~ 199 (267)
T TIGR02685 154 SIVNLCDAMTD---------QPLLGFTMYTMAKHALEGLTRSAALELA--PLQIRVN 199 (267)
T ss_pred EEEEehhhhcc---------CCCcccchhHHHHHHHHHHHHHHHHHHh--hhCeEEE
Confidence 34444432211 1233334678888888888888888764 4456643
|
Pteridine reductase is an enzyme used by trypanosomatids (including Trypanosoma cruzi and Leishmania major) to obtain reduced pteridines by salvage rather than biosynthetic pathways. Enzymes in T. cruzi described as pteridine reductase 1 (PTR1) and pteridine reductase 2 (PTR2) have different activity profiles. PTR1 is more active with with fully oxidized biopterin and folate than with reduced forms, while PTR2 reduces dihydrobiopterin and dihydrofolate but not oxidized pteridines. T. cruzi PTR1 and PTR2 are more similar to each other in sequence than either is to the pteridine reductase of Leishmania major, and all are included in this family. |
| >PRK07062 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=97.92 E-value=0.00012 Score=65.72 Aligned_cols=155 Identities=17% Similarity=0.143 Sum_probs=83.1
Q ss_pred CcEEEEEcCCChhHHHHHHHHHhcccCCCCCCeEEEEEecccchhhhhhhHhhhhhh----cc-CCccceEEeCCHHHH-
Q 019990 5 PLRVLVTGAAGQIGYALVPMIARGIMLGPDQPVILHMLDIEPAAEALNGVKMELIDA----AF-PLLKGVVATTDVVEA- 78 (332)
Q Consensus 5 ~~kI~VtGaaG~IGs~l~~~L~~~~~~~~~~~~~i~l~D~~~~~~~~~~~~~dl~~~----~~-~~~~~v~~~~~~~~a- 78 (332)
.+.++||||+|.||.+++..|++.|. +|++.+++. +.+.....++... .. ....|+....++.+.
T Consensus 8 ~k~~lItGas~giG~~ia~~l~~~G~-------~V~~~~r~~--~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~ 78 (265)
T PRK07062 8 GRVAVVTGGSSGIGLATVELLLEAGA-------SVAICGRDE--ERLASAEARLREKFPGARLLAARCDVLDEADVAAFA 78 (265)
T ss_pred CCEEEEeCCCchHHHHHHHHHHHCCC-------eEEEEeCCH--HHHHHHHHHHHhhCCCceEEEEEecCCCHHHHHHHH
Confidence 46799999999999999999998875 788998854 2333333333221 00 111233333233222
Q ss_pred ------hCCCcEEEEecCCCCCC---CCChhH---HHhhhHH----HHHHHHHHHHhhcCCCcEEEEEeCChhhHHHHHH
Q 019990 79 ------CKDVNIAVMVGGFPRKE---GMERKD---VMSKNVS----IYKAQASALEKHAAPNCKVLVVANPANTNALILK 142 (332)
Q Consensus 79 ------~~~aDiVi~~ag~~~~~---~~~~~~---~~~~N~~----~~~~i~~~i~~~~~~~~~viv~snp~~~~~~~~~ 142 (332)
+...|++|+.||..... ..+..+ .+..|.. .++.++..+++.. .+.++++|+....
T Consensus 79 ~~~~~~~g~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~--~g~iv~isS~~~~------ 150 (265)
T PRK07062 79 AAVEARFGGVDMLVNNAGQGRVSTFADTTDDAWRDELELKYFSVINPTRAFLPLLRASA--AASIVCVNSLLAL------ 150 (265)
T ss_pred HHHHHhcCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHhccC--CcEEEEecccccc------
Confidence 23579999999874321 112222 2344433 3445555555432 3466666653211
Q ss_pred HHCCCCCCCcEEEeecccHHHHHHHHHHHcCCCCCCeee
Q 019990 143 EFAPSIPAKNITCLTRLDHNRAMGQISERLKVHVSDVKN 181 (332)
Q Consensus 143 ~~~~~~~~~~i~~~t~l~~~r~~~~~a~~~~v~~~~v~~ 181 (332)
.+.+....|+.++-....+.+.++..+. +..|+.
T Consensus 151 ---~~~~~~~~y~asKaal~~~~~~la~e~~--~~gi~v 184 (265)
T PRK07062 151 ---QPEPHMVATSAARAGLLNLVKSLATELA--PKGVRV 184 (265)
T ss_pred ---CCCCCchHhHHHHHHHHHHHHHHHHHhh--hcCeEE
Confidence 1111112355556555566666666654 344654
|
|
| >TIGR03649 ergot_EASG ergot alkaloid biosynthesis protein, AFUA_2G17970 family | Back alignment and domain information |
|---|
Probab=97.92 E-value=4.8e-05 Score=69.15 Aligned_cols=98 Identities=6% Similarity=0.066 Sum_probs=62.1
Q ss_pred EEEEEcCCChhHHHHHHHHHhcccCCCCCCeEEEEEecccchhhhhhhHhhhhhhccCCccceEEeCCHHHHh------C
Q 019990 7 RVLVTGAAGQIGYALVPMIARGIMLGPDQPVILHMLDIEPAAEALNGVKMELIDAAFPLLKGVVATTDVVEAC------K 80 (332)
Q Consensus 7 kI~VtGaaG~IGs~l~~~L~~~~~~~~~~~~~i~l~D~~~~~~~~~~~~~dl~~~~~~~~~~v~~~~~~~~a~------~ 80 (332)
+|+||||+|++|++++..|++.++ +|+.+.++... ... ... .....++.....+.+++ +
T Consensus 1 ~ilVtGatG~iG~~vv~~L~~~g~-------~V~~~~R~~~~--~~~-----~~~-~~~~~d~~d~~~l~~a~~~~~~~~ 65 (285)
T TIGR03649 1 TILLTGGTGKTASRIARLLQAASV-------PFLVASRSSSS--SAG-----PNE-KHVKFDWLDEDTWDNPFSSDDGME 65 (285)
T ss_pred CEEEEcCCChHHHHHHHHHHhCCC-------cEEEEeCCCcc--ccC-----CCC-ccccccCCCHHHHHHHHhcccCcC
Confidence 589999999999999999998875 78888875421 110 000 01123455555666777 6
Q ss_pred C-CcEEEEecCCCCCCCCChhHHHhhhHHHHHHHHHHHHhhcCCCcEEEEEeC
Q 019990 81 D-VNIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEKHAAPNCKVLVVAN 132 (332)
Q Consensus 81 ~-aDiVi~~ag~~~~~~~~~~~~~~~N~~~~~~i~~~i~~~~~~~~~viv~sn 132 (332)
+ +|.|+++++... .. ....+++++++++.+ -. ++|..|.
T Consensus 66 g~~d~v~~~~~~~~----~~-------~~~~~~~i~aa~~~g-v~-~~V~~Ss 105 (285)
T TIGR03649 66 PEISAVYLVAPPIP----DL-------APPMIKFIDFARSKG-VR-RFVLLSA 105 (285)
T ss_pred CceeEEEEeCCCCC----Ch-------hHHHHHHHHHHHHcC-CC-EEEEeec
Confidence 7 999999865321 11 233457788888775 22 5666553
|
This family consists of fungal proteins of unknown function associated with secondary metabolite biosynthesis, such as of the ergot alkaloids such as ergovaline. Nomenclature differs because gene order differs - this is EasG in Neotyphodium lolii but is designated ergot alkaloid biosynthetic protein A in several other fungi. |
| >PRK07370 enoyl-(acyl carrier protein) reductase; Validated | Back alignment and domain information |
|---|
Probab=97.92 E-value=0.0001 Score=66.15 Aligned_cols=160 Identities=14% Similarity=0.178 Sum_probs=87.8
Q ss_pred CCcEEEEEcCC--ChhHHHHHHHHHhcccCCCCCCeEEEEEecccchhhhhhhHhhhhhh---ccCCccceEEeCCHHHH
Q 019990 4 NPLRVLVTGAA--GQIGYALVPMIARGIMLGPDQPVILHMLDIEPAAEALNGVKMELIDA---AFPLLKGVVATTDVVEA 78 (332)
Q Consensus 4 ~~~kI~VtGaa--G~IGs~l~~~L~~~~~~~~~~~~~i~l~D~~~~~~~~~~~~~dl~~~---~~~~~~~v~~~~~~~~a 78 (332)
..+.++||||+ +-||.+++..|++.|. +|.+.+++....+......++... ...+..|+....++.+.
T Consensus 5 ~~k~~lItGas~~~GIG~aia~~la~~G~-------~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~v~~~ 77 (258)
T PRK07370 5 TGKKALVTGIANNRSIAWGIAQQLHAAGA-------ELGITYLPDEKGRFEKKVRELTEPLNPSLFLPCDVQDDAQIEET 77 (258)
T ss_pred CCcEEEEeCCCCCCchHHHHHHHHHHCCC-------EEEEEecCcccchHHHHHHHHHhccCcceEeecCcCCHHHHHHH
Confidence 45679999975 6899999999999885 777765432111111111222111 01122344443333322
Q ss_pred -------hCCCcEEEEecCCCCC-----C--CCChh---HHHhhhHHHHHHHHHHHHhhcCCCcEEEEEeCChhhHHHHH
Q 019990 79 -------CKDVNIAVMVGGFPRK-----E--GMERK---DVMSKNVSIYKAQASALEKHAAPNCKVLVVANPANTNALIL 141 (332)
Q Consensus 79 -------~~~aDiVi~~ag~~~~-----~--~~~~~---~~~~~N~~~~~~i~~~i~~~~~~~~~viv~snp~~~~~~~~ 141 (332)
+...|++|+.||.... + ..+.+ ..+..|+.....+.+.+...-...++++++|+....
T Consensus 78 ~~~~~~~~g~iD~lv~nag~~~~~~~~~~~~~~~~~~~~~~~~iN~~~~~~l~~~~~~~m~~~g~Iv~isS~~~~----- 152 (258)
T PRK07370 78 FETIKQKWGKLDILVHCLAFAGKEELIGDFSATSREGFARALEISAYSLAPLCKAAKPLMSEGGSIVTLTYLGGV----- 152 (258)
T ss_pred HHHHHHHcCCCCEEEEcccccCcccccCcchhhCHHHHHHHheeeeHHHHHHHHHHHHHHhhCCeEEEEeccccc-----
Confidence 2357999999986421 1 11222 244566655544444433321123566766653211
Q ss_pred HHHCCCCCCCcEEEeecccHHHHHHHHHHHcCCCCCCeee
Q 019990 142 KEFAPSIPAKNITCLTRLDHNRAMGQISERLKVHVSDVKN 181 (332)
Q Consensus 142 ~~~~~~~~~~~i~~~t~l~~~r~~~~~a~~~~v~~~~v~~ 181 (332)
.+.|....|+.+|-....+.+.++..++ +..|+.
T Consensus 153 ----~~~~~~~~Y~asKaal~~l~~~la~el~--~~gI~V 186 (258)
T PRK07370 153 ----RAIPNYNVMGVAKAALEASVRYLAAELG--PKNIRV 186 (258)
T ss_pred ----cCCcccchhhHHHHHHHHHHHHHHHHhC--cCCeEE
Confidence 1233334678888888888888888875 566764
|
|
| >PRK06484 short chain dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=97.92 E-value=5.7e-05 Score=74.76 Aligned_cols=154 Identities=18% Similarity=0.117 Sum_probs=82.4
Q ss_pred CCCCCcEEEEEcCCChhHHHHHHHHHhcccCCCCCCeEEEEEecccchhhhhhhHhhhhhhccCCccceEEeCCHHHH--
Q 019990 1 MAKNPLRVLVTGAAGQIGYALVPMIARGIMLGPDQPVILHMLDIEPAAEALNGVKMELIDAAFPLLKGVVATTDVVEA-- 78 (332)
Q Consensus 1 m~~~~~kI~VtGaaG~IGs~l~~~L~~~~~~~~~~~~~i~l~D~~~~~~~~~~~~~dl~~~~~~~~~~v~~~~~~~~a-- 78 (332)
|..+.+.++||||++.||.+++..|.+.|. +|.+++++. +.+.....++......+..|+....++.++
T Consensus 1 ~~~~~k~~lITGas~gIG~aia~~l~~~G~-------~V~~~~r~~--~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~ 71 (520)
T PRK06484 1 SKAQSRVVLVTGAAGGIGRAACQRFARAGD-------QVVVADRNV--ERARERADSLGPDHHALAMDVSDEAQIREGFE 71 (520)
T ss_pred CCCCCeEEEEECCCcHHHHHHHHHHHHCCC-------EEEEEeCCH--HHHHHHHHHhCCceeEEEeccCCHHHHHHHHH
Confidence 444567899999999999999999999885 789998753 233222222211001112344333333222
Q ss_pred -----hCCCcEEEEecCCCC---CC--CCCh---hHHHhhhHHHHHHHHHHHHhhc---CCCcEEEEEeCChhhHHHHHH
Q 019990 79 -----CKDVNIAVMVGGFPR---KE--GMER---KDVMSKNVSIYKAQASALEKHA---APNCKVLVVANPANTNALILK 142 (332)
Q Consensus 79 -----~~~aDiVi~~ag~~~---~~--~~~~---~~~~~~N~~~~~~i~~~i~~~~---~~~~~viv~snp~~~~~~~~~ 142 (332)
+...|++|+.||... .+ ..+. ...+..|+.....+.+++..+- ....+++++|+-...
T Consensus 72 ~~~~~~g~iD~li~nag~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~g~~iv~isS~~~~------ 145 (520)
T PRK06484 72 QLHREFGRIDVLVNNAGVTDPTMTATLDTTLEEFARLQAINLTGAYLVAREALRLMIEQGHGAAIVNVASGAGL------ 145 (520)
T ss_pred HHHHHhCCCCEEEECCCcCCCCCcccccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCCCeEEEECCcccC------
Confidence 245899999998721 11 1222 2345677666555555444331 122366776653211
Q ss_pred HHCCCCCCCcEEEeecccHHHHHHHHHHHc
Q 019990 143 EFAPSIPAKNITCLTRLDHNRAMGQISERL 172 (332)
Q Consensus 143 ~~~~~~~~~~i~~~t~l~~~r~~~~~a~~~ 172 (332)
.+.+....|+.+|.....+.+.+++.+
T Consensus 146 ---~~~~~~~~Y~asKaal~~l~~~la~e~ 172 (520)
T PRK06484 146 ---VALPKRTAYSASKAAVISLTRSLACEW 172 (520)
T ss_pred ---CCCCCCchHHHHHHHHHHHHHHHHHHh
Confidence 011222245555555555555555543
|
|
| >PLN02780 ketoreductase/ oxidoreductase | Back alignment and domain information |
|---|
Probab=97.90 E-value=6.6e-05 Score=69.70 Aligned_cols=157 Identities=17% Similarity=0.181 Sum_probs=89.5
Q ss_pred CcEEEEEcCCChhHHHHHHHHHhcccCCCCCCeEEEEEecccchhhhhhhHhhhhhhc----c-CCccceEEe-C----C
Q 019990 5 PLRVLVTGAAGQIGYALVPMIARGIMLGPDQPVILHMLDIEPAAEALNGVKMELIDAA----F-PLLKGVVAT-T----D 74 (332)
Q Consensus 5 ~~kI~VtGaaG~IGs~l~~~L~~~~~~~~~~~~~i~l~D~~~~~~~~~~~~~dl~~~~----~-~~~~~v~~~-~----~ 74 (332)
.+.++||||+|.||.+++..|++.|. +|.+++++. +.++....++.... . ....|+... . .
T Consensus 53 g~~~lITGAs~GIG~alA~~La~~G~-------~Vil~~R~~--~~l~~~~~~l~~~~~~~~~~~~~~Dl~~~~~~~~~~ 123 (320)
T PLN02780 53 GSWALVTGPTDGIGKGFAFQLARKGL-------NLVLVARNP--DKLKDVSDSIQSKYSKTQIKTVVVDFSGDIDEGVKR 123 (320)
T ss_pred CCEEEEeCCCcHHHHHHHHHHHHCCC-------CEEEEECCH--HHHHHHHHHHHHHCCCcEEEEEEEECCCCcHHHHHH
Confidence 46799999999999999999999885 799999864 34444444443210 0 011223210 1 1
Q ss_pred HHHHhC--CCcEEEEecCCCCC---C--CCChh---HHHhhhHHHHHHHHHHH----HhhcCCCcEEEEEeCChhhHHHH
Q 019990 75 VVEACK--DVNIAVMVGGFPRK---E--GMERK---DVMSKNVSIYKAQASAL----EKHAAPNCKVLVVANPANTNALI 140 (332)
Q Consensus 75 ~~~a~~--~aDiVi~~ag~~~~---~--~~~~~---~~~~~N~~~~~~i~~~i----~~~~~~~~~viv~snp~~~~~~~ 140 (332)
+.+.+. +.|++|+.||.... + ..+.+ ..++.|+.....+.+.+ .+. ..+.++++|+.....
T Consensus 124 l~~~~~~~didilVnnAG~~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~lp~m~~~--~~g~IV~iSS~a~~~--- 198 (320)
T PLN02780 124 IKETIEGLDVGVLINNVGVSYPYARFFHEVDEELLKNLIKVNVEGTTKVTQAVLPGMLKR--KKGAIINIGSGAAIV--- 198 (320)
T ss_pred HHHHhcCCCccEEEEecCcCCCCCcccccCCHHHHHHHHHHhHHHHHHHHHHHHHHHHhc--CCcEEEEEechhhcc---
Confidence 222333 35599999987421 1 12222 35667776665555544 333 235667776532110
Q ss_pred HHHHCCCCCCCcEEEeecccHHHHHHHHHHHcCCCCCCeee
Q 019990 141 LKEFAPSIPAKNITCLTRLDHNRAMGQISERLKVHVSDVKN 181 (332)
Q Consensus 141 ~~~~~~~~~~~~i~~~t~l~~~r~~~~~a~~~~v~~~~v~~ 181 (332)
.+..|....|+.+|.....+...++..+. +..|+.
T Consensus 199 ----~~~~p~~~~Y~aSKaal~~~~~~L~~El~--~~gI~V 233 (320)
T PLN02780 199 ----IPSDPLYAVYAATKAYIDQFSRCLYVEYK--KSGIDV 233 (320)
T ss_pred ----CCCCccchHHHHHHHHHHHHHHHHHHHHh--ccCeEE
Confidence 01122233678888888888888887764 344553
|
|
| >PRK07533 enoyl-(acyl carrier protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=97.90 E-value=0.00013 Score=65.39 Aligned_cols=159 Identities=13% Similarity=0.068 Sum_probs=86.8
Q ss_pred CCcEEEEEcCC--ChhHHHHHHHHHhcccCCCCCCeEEEEEecccch-hhhhhhHhhhhhhccCCccceEEeCCHHHH--
Q 019990 4 NPLRVLVTGAA--GQIGYALVPMIARGIMLGPDQPVILHMLDIEPAA-EALNGVKMELIDAAFPLLKGVVATTDVVEA-- 78 (332)
Q Consensus 4 ~~~kI~VtGaa--G~IGs~l~~~L~~~~~~~~~~~~~i~l~D~~~~~-~~~~~~~~dl~~~~~~~~~~v~~~~~~~~a-- 78 (332)
+.+.++||||+ +.||.+++..|++.|. +|.+.|++... +.+.....++... .....|++...+..+.
T Consensus 9 ~~k~~lItGas~g~GIG~a~a~~la~~G~-------~v~l~~r~~~~~~~~~~~~~~~~~~-~~~~~D~~~~~~v~~~~~ 80 (258)
T PRK07533 9 AGKRGLVVGIANEQSIAWGCARAFRALGA-------ELAVTYLNDKARPYVEPLAEELDAP-IFLPLDVREPGQLEAVFA 80 (258)
T ss_pred CCCEEEEECCCCCCcHHHHHHHHHHHcCC-------EEEEEeCChhhHHHHHHHHHhhccc-eEEecCcCCHHHHHHHHH
Confidence 45779999987 4899999999998875 78888875321 1112111222111 1112344433333222
Q ss_pred -----hCCCcEEEEecCCCCC-------CCCCh---hHHHhhhHHHHHHHHHHHHhhcCCCcEEEEEeCChhhHHHHHHH
Q 019990 79 -----CKDVNIAVMVGGFPRK-------EGMER---KDVMSKNVSIYKAQASALEKHAAPNCKVLVVANPANTNALILKE 143 (332)
Q Consensus 79 -----~~~aDiVi~~ag~~~~-------~~~~~---~~~~~~N~~~~~~i~~~i~~~~~~~~~viv~snp~~~~~~~~~~ 143 (332)
+...|++|+.||.... ...+. ...++.|+...-.+.+.+..+-...+.++++|+....
T Consensus 81 ~~~~~~g~ld~lv~nAg~~~~~~~~~~~~~~~~~~~~~~~~vN~~~~~~~~~~~~p~m~~~g~Ii~iss~~~~------- 153 (258)
T PRK07533 81 RIAEEWGRLDFLLHSIAFAPKEDLHGRVVDCSREGFALAMDVSCHSFIRMARLAEPLMTNGGSLLTMSYYGAE------- 153 (258)
T ss_pred HHHHHcCCCCEEEEcCccCCcccccCCcccCCHHHHHHHHhhhhHHHHHHHHHHHHHhccCCEEEEEeccccc-------
Confidence 2357999999986421 01222 2345667666655555444332123456666542211
Q ss_pred HCCCCCCCcEEEeecccHHHHHHHHHHHcCCCCCCeee
Q 019990 144 FAPSIPAKNITCLTRLDHNRAMGQISERLKVHVSDVKN 181 (332)
Q Consensus 144 ~~~~~~~~~i~~~t~l~~~r~~~~~a~~~~v~~~~v~~ 181 (332)
...+....|+.+|-.-..+.+.++..++ +..|+.
T Consensus 154 --~~~~~~~~Y~asKaal~~l~~~la~el~--~~gI~V 187 (258)
T PRK07533 154 --KVVENYNLMGPVKAALESSVRYLAAELG--PKGIRV 187 (258)
T ss_pred --cCCccchhhHHHHHHHHHHHHHHHHHhh--hcCcEE
Confidence 1122223567778777777777877765 445654
|
|
| >PRK09009 C factor cell-cell signaling protein; Provisional | Back alignment and domain information |
|---|
Probab=97.88 E-value=0.00011 Score=64.55 Aligned_cols=156 Identities=11% Similarity=0.114 Sum_probs=81.8
Q ss_pred cEEEEEcCCChhHHHHHHHHHhcccCCCCCCeEEEEEecccchhhhhhhHhhhhhhcc-CCccceEEeCC---HHHHhCC
Q 019990 6 LRVLVTGAAGQIGYALVPMIARGIMLGPDQPVILHMLDIEPAAEALNGVKMELIDAAF-PLLKGVVATTD---VVEACKD 81 (332)
Q Consensus 6 ~kI~VtGaaG~IGs~l~~~L~~~~~~~~~~~~~i~l~D~~~~~~~~~~~~~dl~~~~~-~~~~~v~~~~~---~~~a~~~ 81 (332)
|+|+||||+|+||++++..|++.+. + ..+.+.+++...+ ..+... ....|++...+ +.+.+..
T Consensus 1 ~~vlItGas~gIG~~ia~~l~~~~~-~----~~v~~~~~~~~~~--------~~~~~~~~~~~Dls~~~~~~~~~~~~~~ 67 (235)
T PRK09009 1 MNILIVGGSGGIGKAMVKQLLERYP-D----ATVHATYRHHKPD--------FQHDNVQWHALDVTDEAEIKQLSEQFTQ 67 (235)
T ss_pred CEEEEECCCChHHHHHHHHHHHhCC-C----CEEEEEccCCccc--------cccCceEEEEecCCCHHHHHHHHHhcCC
Confidence 4799999999999999999988642 1 2555555432110 101000 01123322222 2334567
Q ss_pred CcEEEEecCCCCCC---------CCChh---HHHhhhHHHHHHHHHHHHhhcC--CCcEEEEEeCChhhHHHHHHHHCCC
Q 019990 82 VNIAVMVGGFPRKE---------GMERK---DVMSKNVSIYKAQASALEKHAA--PNCKVLVVANPANTNALILKEFAPS 147 (332)
Q Consensus 82 aDiVi~~ag~~~~~---------~~~~~---~~~~~N~~~~~~i~~~i~~~~~--~~~~viv~snp~~~~~~~~~~~~~~ 147 (332)
.|+||+.||..... ..+.+ ..+..|......+.+.+..+.. ...+++++|...... .. ..
T Consensus 68 id~li~~aG~~~~~~~~~~~~~~~~~~~~~~~~~~vn~~~~~~~~~~~~~~~~~~~~~~i~~iss~~~~~----~~--~~ 141 (235)
T PRK09009 68 LDWLINCVGMLHTQDKGPEKSLQALDADFFLQNITLNTLPSLLLAKHFTPKLKQSESAKFAVISAKVGSI----SD--NR 141 (235)
T ss_pred CCEEEECCccccccccCcccccccCCHHHHHHHHHHHhHHHHHHHHHHHhhccccCCceEEEEeeccccc----cc--CC
Confidence 89999999874311 11222 2344554444444444433211 124566665422211 00 11
Q ss_pred CCCCcEEEeecccHHHHHHHHHHHcCCCCCCee
Q 019990 148 IPAKNITCLTRLDHNRAMGQISERLKVHVSDVK 180 (332)
Q Consensus 148 ~~~~~i~~~t~l~~~r~~~~~a~~~~v~~~~v~ 180 (332)
.+....|+.+|.....+...++..+.-....++
T Consensus 142 ~~~~~~Y~asK~a~~~~~~~la~e~~~~~~~i~ 174 (235)
T PRK09009 142 LGGWYSYRASKAALNMFLKTLSIEWQRSLKHGV 174 (235)
T ss_pred CCCcchhhhhHHHHHHHHHHHHHHhhcccCCeE
Confidence 233346788888888888888877654334565
|
|
| >TIGR01829 AcAcCoA_reduct acetoacetyl-CoA reductase | Back alignment and domain information |
|---|
Probab=97.88 E-value=9.6e-05 Score=65.11 Aligned_cols=155 Identities=13% Similarity=0.075 Sum_probs=80.4
Q ss_pred cEEEEEcCCChhHHHHHHHHHhcccCCCCCCeEEEEEecccchhhhhhhHhhhhhh--cc-CCccceEEeCCHHH-----
Q 019990 6 LRVLVTGAAGQIGYALVPMIARGIMLGPDQPVILHMLDIEPAAEALNGVKMELIDA--AF-PLLKGVVATTDVVE----- 77 (332)
Q Consensus 6 ~kI~VtGaaG~IGs~l~~~L~~~~~~~~~~~~~i~l~D~~~~~~~~~~~~~dl~~~--~~-~~~~~v~~~~~~~~----- 77 (332)
+.++||||+|+||++++..|++.|. +++++.... .+.......++... .. ....|+....++.+
T Consensus 1 k~~lItG~sg~iG~~la~~l~~~G~-------~v~~~~r~~-~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~ 72 (242)
T TIGR01829 1 RIALVTGGMGGIGTAICQRLAKDGY-------RVAANCGPN-EERAEAWLQEQGALGFDFRVVEGDVSSFESCKAAVAKV 72 (242)
T ss_pred CEEEEECCCChHHHHHHHHHHHCCC-------EEEEEeCCC-HHHHHHHHHHHHhhCCceEEEEecCCCHHHHHHHHHHH
Confidence 3589999999999999999998875 677766521 12222111122111 00 01123332222222
Q ss_pred --HhCCCcEEEEecCCCCCC---CCCh---hHHHhhhHHHHHH----HHHHHHhhcCCCcEEEEEeCChhhHHHHHHHHC
Q 019990 78 --ACKDVNIAVMVGGFPRKE---GMER---KDVMSKNVSIYKA----QASALEKHAAPNCKVLVVANPANTNALILKEFA 145 (332)
Q Consensus 78 --a~~~aDiVi~~ag~~~~~---~~~~---~~~~~~N~~~~~~----i~~~i~~~~~~~~~viv~snp~~~~~~~~~~~~ 145 (332)
.+...|+|||.+|..... ..+. ...+..|...... +...+++.. ..+++++|+....
T Consensus 73 ~~~~~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~--~~~iv~iss~~~~--------- 141 (242)
T TIGR01829 73 EAELGPIDVLVNNAGITRDATFKKMTYEQWSAVIDTNLNSVFNVTQPVIDGMRERG--WGRIINISSVNGQ--------- 141 (242)
T ss_pred HHHcCCCcEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcC--CcEEEEEcchhhc---------
Confidence 234589999999864311 1121 2345667665444 444444432 3466666653211
Q ss_pred CCCCCCcEEEeecccHHHHHHHHHHHcCCCCCCeee
Q 019990 146 PSIPAKNITCLTRLDHNRAMGQISERLKVHVSDVKN 181 (332)
Q Consensus 146 ~~~~~~~i~~~t~l~~~r~~~~~a~~~~v~~~~v~~ 181 (332)
.+.+....|+.++.....+...+++.+. +..++.
T Consensus 142 ~~~~~~~~y~~sk~a~~~~~~~la~~~~--~~~i~v 175 (242)
T TIGR01829 142 KGQFGQTNYSAAKAGMIGFTKALAQEGA--TKGVTV 175 (242)
T ss_pred CCCCCcchhHHHHHHHHHHHHHHHHHhh--hhCeEE
Confidence 1222223456666655566666666543 334553
|
(R)-3-hydroxyacyl-CoA + NADP+ = 3-oxoacyl-CoA + NADPH. Members of this family may act in the biosynthesis of poly-beta-hydroxybutyrate (e.g. Rhizobium meliloti) and related poly-beta-hydroxyalkanoates. Note that the member of this family from Azospirillum brasilense, designated NodG, appears to lack acetoacetyl-CoA reductase activity and to act instead in the production of nodulation factor. This family is downgraded to subfamily for this NodG. Other proteins designated NodG, as from Rhizobium, belong to related but distinct protein families. |
| >COG0240 GpsA Glycerol-3-phosphate dehydrogenase [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=97.87 E-value=0.00057 Score=62.66 Aligned_cols=110 Identities=22% Similarity=0.266 Sum_probs=72.3
Q ss_pred CcEEEEEcCCChhHHHHHHHHHhcccCCCCCCeEEEEEecccchhhhhhhHhhhhh--hcc------CCccceEEeCCHH
Q 019990 5 PLRVLVTGAAGQIGYALVPMIARGIMLGPDQPVILHMLDIEPAAEALNGVKMELID--AAF------PLLKGVVATTDVV 76 (332)
Q Consensus 5 ~~kI~VtGaaG~IGs~l~~~L~~~~~~~~~~~~~i~l~D~~~~~~~~~~~~~dl~~--~~~------~~~~~v~~~~~~~ 76 (332)
++||+|+| +|.=|++|+..|.++++ +|++..+++ + ...++.. .+. .+..++..+.|+.
T Consensus 1 ~~kI~ViG-aGswGTALA~~la~ng~-------~V~lw~r~~--~----~~~~i~~~~~N~~yLp~i~lp~~l~at~Dl~ 66 (329)
T COG0240 1 MMKIAVIG-AGSWGTALAKVLARNGH-------EVRLWGRDE--E----IVAEINETRENPKYLPGILLPPNLKATTDLA 66 (329)
T ss_pred CceEEEEc-CChHHHHHHHHHHhcCC-------eeEEEecCH--H----HHHHHHhcCcCccccCCccCCcccccccCHH
Confidence 47899999 69999999999999885 899998753 1 2223322 222 1235677788999
Q ss_pred HHhCCCcEEEEecCCCCCCCCChhHHHhhhHHHHHHHHHHHHhhcCCCcEEEEEe-----CChhhHHHHHHHH
Q 019990 77 EACKDVNIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEKHAAPNCKVLVVA-----NPANTNALILKEF 144 (332)
Q Consensus 77 ~a~~~aDiVi~~ag~~~~~~~~~~~~~~~N~~~~~~i~~~i~~~~~~~~~viv~s-----np~~~~~~~~~~~ 144 (332)
++++++|+|++.. | ...++++++.+..+-.++.+++.++ ++...+..++.+.
T Consensus 67 ~a~~~ad~iv~av--P--------------s~~~r~v~~~l~~~l~~~~~iv~~sKGie~~t~~l~seii~e~ 123 (329)
T COG0240 67 EALDGADIIVIAV--P--------------SQALREVLRQLKPLLLKDAIIVSATKGLEPETGRLLSEIIEEE 123 (329)
T ss_pred HHHhcCCEEEEEC--C--------------hHHHHHHHHHHhhhccCCCeEEEEeccccCCCcchHHHHHHHH
Confidence 9999999999862 2 2334555555544433556667776 2233455555554
|
|
| >COG1748 LYS9 Saccharopine dehydrogenase and related proteins [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.87 E-value=0.00017 Score=67.82 Aligned_cols=100 Identities=18% Similarity=0.149 Sum_probs=62.9
Q ss_pred CcEEEEEcCCChhHHHHHHHHHhcccCCCCCCeEEEEEecccchhhhhhhHhhhhhhcc-CCccceEEeCCHHHHhCCCc
Q 019990 5 PLRVLVTGAAGQIGYALVPMIARGIMLGPDQPVILHMLDIEPAAEALNGVKMELIDAAF-PLLKGVVATTDVVEACKDVN 83 (332)
Q Consensus 5 ~~kI~VtGaaG~IGs~l~~~L~~~~~~~~~~~~~i~l~D~~~~~~~~~~~~~dl~~~~~-~~~~~v~~~~~~~~a~~~aD 83 (332)
|+||+|+| +|+||+.++..|++.+. .+|.+.|+.. ++.... .+..+... ...-|+.....+.+.+++.|
T Consensus 1 m~~ilviG-aG~Vg~~va~~la~~~d------~~V~iAdRs~--~~~~~i-~~~~~~~v~~~~vD~~d~~al~~li~~~d 70 (389)
T COG1748 1 MMKILVIG-AGGVGSVVAHKLAQNGD------GEVTIADRSK--EKCARI-AELIGGKVEALQVDAADVDALVALIKDFD 70 (389)
T ss_pred CCcEEEEC-CchhHHHHHHHHHhCCC------ceEEEEeCCH--HHHHHH-HhhccccceeEEecccChHHHHHHHhcCC
Confidence 57899999 59999999999998774 2899999863 222211 11111101 11224444556778899999
Q ss_pred EEEEecCCCCCCCCChhHHHhhhHHHHHHHHHHHHhhcCCCcEEEEEeCC
Q 019990 84 IAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEKHAAPNCKVLVVANP 133 (332)
Q Consensus 84 iVi~~ag~~~~~~~~~~~~~~~N~~~~~~i~~~i~~~~~~~~~viv~snp 133 (332)
+||+++.... ...++++|.+.+ +.++-+|+-
T Consensus 71 ~VIn~~p~~~----------------~~~i~ka~i~~g---v~yvDts~~ 101 (389)
T COG1748 71 LVINAAPPFV----------------DLTILKACIKTG---VDYVDTSYY 101 (389)
T ss_pred EEEEeCCchh----------------hHHHHHHHHHhC---CCEEEcccC
Confidence 9999874321 125667777765 345555653
|
|
| >COG3320 Putative dehydrogenase domain of multifunctional non-ribosomal peptide synthetases and related enzymes [Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Probab=97.87 E-value=6.6e-05 Score=69.52 Aligned_cols=171 Identities=13% Similarity=0.074 Sum_probs=95.1
Q ss_pred cEEEEEcCCChhHHHHHHHHHhcccCCCCCCeEEEEEecccchhhhhhhHhh-hh---hhc-------cCCccceEEe--
Q 019990 6 LRVLVTGAAGQIGYALVPMIARGIMLGPDQPVILHMLDIEPAAEALNGVKME-LI---DAA-------FPLLKGVVAT-- 72 (332)
Q Consensus 6 ~kI~VtGaaG~IGs~l~~~L~~~~~~~~~~~~~i~l~D~~~~~~~~~~~~~d-l~---~~~-------~~~~~~v~~~-- 72 (332)
++|++|||+||+|.+++..|+..... +|++.=+..+++........ +. +.. .+..+++...
T Consensus 1 ~~vlLTGATGFLG~yLl~eLL~~~~~------kv~cLVRA~s~E~a~~RL~~~~~~~~~~~e~~~~ri~vv~gDl~e~~l 74 (382)
T COG3320 1 RNVLLTGATGFLGAYLLLELLDRSDA------KVICLVRAQSDEAALARLEKTFDLYRHWDELSADRVEVVAGDLAEPDL 74 (382)
T ss_pred CeEEEecCchHhHHHHHHHHHhcCCC------cEEEEEecCCHHHHHHHHHHHhhhhhhhhhhhcceEEEEecccccccC
Confidence 46999999999999999999876432 44443333332222111111 11 110 0122333311
Q ss_pred ---CCHHHHh-CCCcEEEEecCCCCCCCCChhHHHhhhHHHHHHHHHHHHhhcCCCcEEEEEeCChhhHHHHH-------
Q 019990 73 ---TDVVEAC-KDVNIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEKHAAPNCKVLVVANPANTNALIL------- 141 (332)
Q Consensus 73 ---~~~~~a~-~~aDiVi~~ag~~~~~~~~~~~~~~~N~~~~~~i~~~i~~~~~~~~~viv~snp~~~~~~~~------- 141 (332)
....+.+ ..+|.|+|.|+... .-.+...+...|+.++.++++.+... +++ .+..+|+ ..+.++..
T Consensus 75 GL~~~~~~~La~~vD~I~H~gA~Vn-~v~pYs~L~~~NVlGT~evlrLa~~g-k~K-p~~yVSs-isv~~~~~~~~~~~~ 150 (382)
T COG3320 75 GLSERTWQELAENVDLIIHNAALVN-HVFPYSELRGANVLGTAEVLRLAATG-KPK-PLHYVSS-ISVGETEYYSNFTVD 150 (382)
T ss_pred CCCHHHHHHHhhhcceEEecchhhc-ccCcHHHhcCcchHhHHHHHHHHhcC-CCc-eeEEEee-eeeccccccCCCccc
Confidence 1112334 45999999987532 12345667889999999999888764 233 2444443 11111100
Q ss_pred -HHHCCCCCCCc----EEEeecccHHHHHHHHHHHcCCCCCCeeeeEEEec
Q 019990 142 -KEFAPSIPAKN----ITCLTRLDHNRAMGQISERLKVHVSDVKNVIIWGN 187 (332)
Q Consensus 142 -~~~~~~~~~~~----i~~~t~l~~~r~~~~~a~~~~v~~~~v~~~~V~G~ 187 (332)
.+........+ -|+-+|-.++++.....+. |++...+|+-+|.|.
T Consensus 151 ~~~~~~~~~~~~~~~~GY~~SKwvaE~Lvr~A~~r-GLpv~I~Rpg~I~gd 200 (382)
T COG3320 151 FDEISPTRNVGQGLAGGYGRSKWVAEKLVREAGDR-GLPVTIFRPGYITGD 200 (382)
T ss_pred cccccccccccCccCCCcchhHHHHHHHHHHHhhc-CCCeEEEecCeeecc
Confidence 00000011111 2455778888888877666 999999998877775
|
|
| >PRK07831 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=97.86 E-value=9.3e-05 Score=66.34 Aligned_cols=157 Identities=15% Similarity=0.052 Sum_probs=85.5
Q ss_pred CcEEEEEcCCC-hhHHHHHHHHHhcccCCCCCCeEEEEEecccchhhhhhhHhhhhhh----cc-CCccceEEeCCHHHH
Q 019990 5 PLRVLVTGAAG-QIGYALVPMIARGIMLGPDQPVILHMLDIEPAAEALNGVKMELIDA----AF-PLLKGVVATTDVVEA 78 (332)
Q Consensus 5 ~~kI~VtGaaG-~IGs~l~~~L~~~~~~~~~~~~~i~l~D~~~~~~~~~~~~~dl~~~----~~-~~~~~v~~~~~~~~a 78 (332)
.++++||||+| .||++++..|++.|. +|.+.|++. +.+.....++... .. ....|+....++.+.
T Consensus 17 ~k~vlItG~sg~gIG~~ia~~l~~~G~-------~V~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~ 87 (262)
T PRK07831 17 GKVVLVTAAAGTGIGSATARRALEEGA-------RVVISDIHE--RRLGETADELAAELGLGRVEAVVCDVTSEAQVDAL 87 (262)
T ss_pred CCEEEEECCCcccHHHHHHHHHHHcCC-------EEEEEeCCH--HHHHHHHHHHHHhcCCceEEEEEccCCCHHHHHHH
Confidence 47899999987 599999999998885 788888753 2333322233220 00 011233332223222
Q ss_pred h-------CCCcEEEEecCCCCCC---CCChh---HHHhhhHHHHHHHHHHHHhh---cCCCcEEEEEeCChhhHHHHHH
Q 019990 79 C-------KDVNIAVMVGGFPRKE---GMERK---DVMSKNVSIYKAQASALEKH---AAPNCKVLVVANPANTNALILK 142 (332)
Q Consensus 79 ~-------~~aDiVi~~ag~~~~~---~~~~~---~~~~~N~~~~~~i~~~i~~~---~~~~~~viv~snp~~~~~~~~~ 142 (332)
+ ...|++|+.||..... ..+.. ..+..|......+.+.+... ......++.+++....
T Consensus 88 ~~~~~~~~g~id~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~g~iv~~ss~~~~------ 161 (262)
T PRK07831 88 IDAAVERLGRLDVLVNNAGLGGQTPVVDMTDDEWSRVLDVTLTGTFRATRAALRYMRARGHGGVIVNNASVLGW------ 161 (262)
T ss_pred HHHHHHHcCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCCcEEEEeCchhhc------
Confidence 2 3579999999863211 11222 23455665554444443321 1113455555442211
Q ss_pred HHCCCCCCCcEEEeecccHHHHHHHHHHHcCCCCCCeee
Q 019990 143 EFAPSIPAKNITCLTRLDHNRAMGQISERLKVHVSDVKN 181 (332)
Q Consensus 143 ~~~~~~~~~~i~~~t~l~~~r~~~~~a~~~~v~~~~v~~ 181 (332)
.+.+....|+.+|.....+.+.++..+. +..++.
T Consensus 162 ---~~~~~~~~Y~~sKaal~~~~~~la~e~~--~~gI~v 195 (262)
T PRK07831 162 ---RAQHGQAHYAAAKAGVMALTRCSALEAA--EYGVRI 195 (262)
T ss_pred ---CCCCCCcchHHHHHHHHHHHHHHHHHhC--ccCeEE
Confidence 1223334678888888888888877654 345653
|
|
| >PRK07201 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=97.86 E-value=9.9e-05 Score=75.16 Aligned_cols=148 Identities=16% Similarity=0.099 Sum_probs=84.6
Q ss_pred CcEEEEEcCCChhHHHHHHHHHhcccCCCCCCeEEEEEecccchhhhhhhHhhhhhhc--c-CCccceEEeCCHHHHhC-
Q 019990 5 PLRVLVTGAAGQIGYALVPMIARGIMLGPDQPVILHMLDIEPAAEALNGVKMELIDAA--F-PLLKGVVATTDVVEACK- 80 (332)
Q Consensus 5 ~~kI~VtGaaG~IGs~l~~~L~~~~~~~~~~~~~i~l~D~~~~~~~~~~~~~dl~~~~--~-~~~~~v~~~~~~~~a~~- 80 (332)
.++++||||+|+||.+++..|++.|. +|.+++++. +.+.....++.... . ....|+....++.++++
T Consensus 371 ~k~vlItGas~giG~~la~~l~~~G~-------~V~~~~r~~--~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~~~~~~~~ 441 (657)
T PRK07201 371 GKVVLITGASSGIGRATAIKVAEAGA-------TVFLVARNG--EALDELVAEIRAKGGTAHAYTCDLTDSAAVDHTVKD 441 (657)
T ss_pred CCEEEEeCCCCHHHHHHHHHHHHCCC-------EEEEEECCH--HHHHHHHHHHHhcCCcEEEEEecCCCHHHHHHHHHH
Confidence 46899999999999999999998875 899998754 23332222332111 0 11234443334444333
Q ss_pred ------CCcEEEEecCCCCCC--C-C-----ChhHHHhhhHHHHHHHHHH----HHhhcCCCcEEEEEeCChhhHHHHHH
Q 019990 81 ------DVNIAVMVGGFPRKE--G-M-----ERKDVMSKNVSIYKAQASA----LEKHAAPNCKVLVVANPANTNALILK 142 (332)
Q Consensus 81 ------~aDiVi~~ag~~~~~--~-~-----~~~~~~~~N~~~~~~i~~~----i~~~~~~~~~viv~snp~~~~~~~~~ 142 (332)
..|++|+.||..... . . .....+..|......+... +++.+ ...+|++|+....
T Consensus 442 ~~~~~g~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~--~g~iv~isS~~~~------ 513 (657)
T PRK07201 442 ILAEHGHVDYLVNNAGRSIRRSVENSTDRFHDYERTMAVNYFGAVRLILGLLPHMRERR--FGHVVNVSSIGVQ------ 513 (657)
T ss_pred HHHhcCCCCEEEECCCCCCCCChhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHhhhhcC--CCEEEEECChhhc------
Confidence 689999999864211 0 0 1123456776665444444 44332 3466776653211
Q ss_pred HHCCCCCCCcEEEeecccHHHHHHHHHHHc
Q 019990 143 EFAPSIPAKNITCLTRLDHNRAMGQISERL 172 (332)
Q Consensus 143 ~~~~~~~~~~i~~~t~l~~~r~~~~~a~~~ 172 (332)
.+.+....|+.+|.....+...++..+
T Consensus 514 ---~~~~~~~~Y~~sK~a~~~~~~~la~e~ 540 (657)
T PRK07201 514 ---TNAPRFSAYVASKAALDAFSDVAASET 540 (657)
T ss_pred ---CCCCCcchHHHHHHHHHHHHHHHHHHH
Confidence 112222346777777777777776665
|
|
| >PRK06130 3-hydroxybutyryl-CoA dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=97.84 E-value=0.00042 Score=63.99 Aligned_cols=78 Identities=14% Similarity=0.217 Sum_probs=50.4
Q ss_pred CCCCcEEEEEcCCChhHHHHHHHHHhcccCCCCCCeEEEEEecccchhhhhhhHhhhhhh-c--c------CCccceEEe
Q 019990 2 AKNPLRVLVTGAAGQIGYALVPMIARGIMLGPDQPVILHMLDIEPAAEALNGVKMELIDA-A--F------PLLKGVVAT 72 (332)
Q Consensus 2 ~~~~~kI~VtGaaG~IGs~l~~~L~~~~~~~~~~~~~i~l~D~~~~~~~~~~~~~dl~~~-~--~------~~~~~v~~~ 72 (332)
.++.+||+|+| +|.+|+.++..|+..++ +|.++|.+. +.+......+... . . .....+..+
T Consensus 1 ~~~~~~I~vIG-aG~mG~~iA~~l~~~g~-------~V~~~d~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ 70 (311)
T PRK06130 1 MNPIQNLAIIG-AGTMGSGIAALFARKGL-------QVVLIDVME--GALERARGVIERALGVYAPLGIASAGMGRIRME 70 (311)
T ss_pred CCCccEEEEEC-CCHHHHHHHHHHHhCCC-------eEEEEECCH--HHHHHHHHHHHHHHHHhhhcccHHHHhhceEEe
Confidence 03467899999 69999999999998775 899999854 2222211111100 0 0 011234555
Q ss_pred CCHHHHhCCCcEEEEec
Q 019990 73 TDVVEACKDVNIAVMVG 89 (332)
Q Consensus 73 ~~~~~a~~~aDiVi~~a 89 (332)
.+..+++++||+||.+.
T Consensus 71 ~~~~~~~~~aDlVi~av 87 (311)
T PRK06130 71 AGLAAAVSGADLVIEAV 87 (311)
T ss_pred CCHHHHhccCCEEEEec
Confidence 67777789999999874
|
|
| >PRK06505 enoyl-(acyl carrier protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=97.84 E-value=0.00026 Score=64.01 Aligned_cols=157 Identities=16% Similarity=0.162 Sum_probs=87.8
Q ss_pred CCcEEEEEcCCC--hhHHHHHHHHHhcccCCCCCCeEEEEEecccchhhhhhhHhhhhhh---ccCCccceEEeCCHHHH
Q 019990 4 NPLRVLVTGAAG--QIGYALVPMIARGIMLGPDQPVILHMLDIEPAAEALNGVKMELIDA---AFPLLKGVVATTDVVEA 78 (332)
Q Consensus 4 ~~~kI~VtGaaG--~IGs~l~~~L~~~~~~~~~~~~~i~l~D~~~~~~~~~~~~~dl~~~---~~~~~~~v~~~~~~~~a 78 (332)
+.+.++||||++ .||.+++..|++.|. +|++.+++.. ... ...++.+. ...+..|++...+..+.
T Consensus 6 ~~k~~lVTGas~~~GIG~aiA~~la~~Ga-------~V~~~~r~~~--~~~-~~~~~~~~~g~~~~~~~Dv~d~~~v~~~ 75 (271)
T PRK06505 6 QGKRGLIMGVANDHSIAWGIAKQLAAQGA-------ELAFTYQGEA--LGK-RVKPLAESLGSDFVLPCDVEDIASVDAV 75 (271)
T ss_pred CCCEEEEeCCCCCCcHHHHHHHHHHhCCC-------EEEEecCchH--HHH-HHHHHHHhcCCceEEeCCCCCHHHHHHH
Confidence 346799999886 899999999999885 7888886421 111 11222110 01112344443333222
Q ss_pred -------hCCCcEEEEecCCCCC-----C--CCChhH---HHhhhHHHHHHHHHHHHhhcCCCcEEEEEeCChhhHHHHH
Q 019990 79 -------CKDVNIAVMVGGFPRK-----E--GMERKD---VMSKNVSIYKAQASALEKHAAPNCKVLVVANPANTNALIL 141 (332)
Q Consensus 79 -------~~~aDiVi~~ag~~~~-----~--~~~~~~---~~~~N~~~~~~i~~~i~~~~~~~~~viv~snp~~~~~~~~ 141 (332)
+...|++|+.||.... + ..+.++ .+..|......+.+++..+-...+.+|++++....
T Consensus 76 ~~~~~~~~g~iD~lVnnAG~~~~~~~~~~~~~~~~~~~~~~~~vn~~~~~~l~~~~~~~m~~~G~Iv~isS~~~~----- 150 (271)
T PRK06505 76 FEALEKKWGKLDFVVHAIGFSDKNELKGRYADTTRENFSRTMVISCFSFTEIAKRAAKLMPDGGSMLTLTYGGST----- 150 (271)
T ss_pred HHHHHHHhCCCCEEEECCccCCCccccCChhhcCHHHHHHHHhhhhhhHHHHHHHHHHhhccCceEEEEcCCCcc-----
Confidence 2357999999986421 1 122222 34556655544444443321123466666653211
Q ss_pred HHHCCCCCCCcEEEeecccHHHHHHHHHHHcCCCCCCeee
Q 019990 142 KEFAPSIPAKNITCLTRLDHNRAMGQISERLKVHVSDVKN 181 (332)
Q Consensus 142 ~~~~~~~~~~~i~~~t~l~~~r~~~~~a~~~~v~~~~v~~ 181 (332)
.+.|....|+.+|-....+.+.+|..++ +..||.
T Consensus 151 ----~~~~~~~~Y~asKaAl~~l~r~la~el~--~~gIrV 184 (271)
T PRK06505 151 ----RVMPNYNVMGVAKAALEASVRYLAADYG--PQGIRV 184 (271)
T ss_pred ----ccCCccchhhhhHHHHHHHHHHHHHHHh--hcCeEE
Confidence 1123333678888888888888888864 455663
|
|
| >TIGR01915 npdG NADPH-dependent F420 reductase | Back alignment and domain information |
|---|
Probab=97.84 E-value=0.00038 Score=61.00 Aligned_cols=74 Identities=16% Similarity=0.176 Sum_probs=47.4
Q ss_pred cEEEEEcCCChhHHHHHHHHHhcccCCCCCCeEEEEEecccchhhhhhhHhhhhhhcc--CCccceEEeCCHHHHhCCCc
Q 019990 6 LRVLVTGAAGQIGYALVPMIARGIMLGPDQPVILHMLDIEPAAEALNGVKMELIDAAF--PLLKGVVATTDVVEACKDVN 83 (332)
Q Consensus 6 ~kI~VtGaaG~IGs~l~~~L~~~~~~~~~~~~~i~l~D~~~~~~~~~~~~~dl~~~~~--~~~~~v~~~~~~~~a~~~aD 83 (332)
|||+|+||+|.+|++++..|.+.+. +|.+++++. +++.....+..+... .....+.. .+..++++++|
T Consensus 1 MkI~IIGG~G~mG~ala~~L~~~G~-------~V~v~~r~~--~~~~~l~~~~~~~~~~~g~~~~~~~-~~~~ea~~~aD 70 (219)
T TIGR01915 1 MKIAVLGGTGDQGKGLALRLAKAGN-------KIIIGSRDL--EKAEEAAAKALEELGHGGSDIKVTG-ADNAEAAKRAD 70 (219)
T ss_pred CEEEEEcCCCHHHHHHHHHHHhCCC-------EEEEEEcCH--HHHHHHHHHHHhhccccCCCceEEE-eChHHHHhcCC
Confidence 4799998789999999999998775 888898753 233332222211100 00011222 24567789999
Q ss_pred EEEEec
Q 019990 84 IAVMVG 89 (332)
Q Consensus 84 iVi~~a 89 (332)
+||++.
T Consensus 71 vVilav 76 (219)
T TIGR01915 71 VVILAV 76 (219)
T ss_pred EEEEEC
Confidence 999874
|
This model represents a subset of a parent family described by Pfam model pfam03807. Unlike the parent family, members of this family are found only in species with evidence of coenzyme F420. All members of this family are believed to act as NADPH-dependent F420 reductase. |
| >TIGR03026 NDP-sugDHase nucleotide sugar dehydrogenase | Back alignment and domain information |
|---|
Probab=97.83 E-value=0.0005 Score=66.12 Aligned_cols=106 Identities=25% Similarity=0.364 Sum_probs=64.6
Q ss_pred cEEEEEcCCChhHHHHHHHHHhcccCCCCCCeEEEEEecccchhhhhhhHhhhhhhccCC--------------ccceEE
Q 019990 6 LRVLVTGAAGQIGYALVPMIARGIMLGPDQPVILHMLDIEPAAEALNGVKMELIDAAFPL--------------LKGVVA 71 (332)
Q Consensus 6 ~kI~VtGaaG~IGs~l~~~L~~~~~~~~~~~~~i~l~D~~~~~~~~~~~~~dl~~~~~~~--------------~~~v~~ 71 (332)
|||+|+| .|.+|..++..|...|+ +|..+|++. ++.. ++.....+. .+.++.
T Consensus 1 mkI~vIG-lG~~G~~lA~~La~~G~-------~V~~~d~~~--~~v~----~l~~g~~~~~e~~l~~~~~~~~~~g~l~~ 66 (411)
T TIGR03026 1 MKIAVIG-LGYVGLPLAALLADLGH-------EVTGVDIDQ--EKVD----KLNKGKSPIYEPGLDELLAKALAAGRLRA 66 (411)
T ss_pred CEEEEEC-CCchhHHHHHHHHhcCC-------eEEEEECCH--HHHH----HhhcCCCCCCCCCHHHHHHHhhhcCCeEE
Confidence 4799999 79999999999998886 899999864 2222 122110000 123556
Q ss_pred eCCHHHHhCCCcEEEEecCCCCCCCCChhHHHhhhHHHHHHHHHHHHhhcCCCcEEEEEe
Q 019990 72 TTDVVEACKDVNIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEKHAAPNCKVLVVA 131 (332)
Q Consensus 72 ~~~~~~a~~~aDiVi~~ag~~~~~~~~~~~~~~~N~~~~~~i~~~i~~~~~~~~~viv~s 131 (332)
+.+..++++++|+||++...+..... ..+...+....+.+..+..++..++..|
T Consensus 67 ~~~~~~~~~~advvii~vpt~~~~~~------~~d~~~v~~~~~~i~~~l~~g~lvi~~S 120 (411)
T TIGR03026 67 TTDYEDAIRDADVIIICVPTPLKEDG------SPDLSYVESAAETIAKHLRKGATVVLES 120 (411)
T ss_pred ECCHHHHHhhCCEEEEEeCCCCCCCC------CcChHHHHHHHHHHHHhcCCCCEEEEeC
Confidence 66777788999999999876543211 1123334444455554433444444444
|
All of these enzymes contain three Pfam domains, pfam03721, pfam00984, and pfam03720 for the N-terminal, central, and C-terminal regions respectively. |
| >PRK07791 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=97.81 E-value=0.00014 Score=66.31 Aligned_cols=160 Identities=16% Similarity=0.102 Sum_probs=86.7
Q ss_pred CCcEEEEEcCCChhHHHHHHHHHhcccCCCCCCeEEEEEeccc-------chhhhhhhHhhhhhhc--c-CCccceEEeC
Q 019990 4 NPLRVLVTGAAGQIGYALVPMIARGIMLGPDQPVILHMLDIEP-------AAEALNGVKMELIDAA--F-PLLKGVVATT 73 (332)
Q Consensus 4 ~~~kI~VtGaaG~IGs~l~~~L~~~~~~~~~~~~~i~l~D~~~-------~~~~~~~~~~dl~~~~--~-~~~~~v~~~~ 73 (332)
+.+.++||||++.||.+++..|++.|. ++.+.|.+. ..+.+.....++.... . ....|+....
T Consensus 5 ~~k~~lITGas~GIG~aia~~la~~G~-------~vii~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Dv~~~~ 77 (286)
T PRK07791 5 DGRVVIVTGAGGGIGRAHALAFAAEGA-------RVVVNDIGVGLDGSASGGSAAQAVVDEIVAAGGEAVANGDDIADWD 77 (286)
T ss_pred CCCEEEEECCCchHHHHHHHHHHHCCC-------EEEEeeCCccccccccchhHHHHHHHHHHhcCCceEEEeCCCCCHH
Confidence 457899999999999999999998875 788887642 0012222223332111 0 1123444333
Q ss_pred CHHHH-------hCCCcEEEEecCCCCCC---CCChh---HHHhhhHHHHHHHHHHH----HhhcC----CCcEEEEEeC
Q 019990 74 DVVEA-------CKDVNIAVMVGGFPRKE---GMERK---DVMSKNVSIYKAQASAL----EKHAA----PNCKVLVVAN 132 (332)
Q Consensus 74 ~~~~a-------~~~aDiVi~~ag~~~~~---~~~~~---~~~~~N~~~~~~i~~~i----~~~~~----~~~~viv~sn 132 (332)
+..+. +...|++|+.||..... ..+.+ ..+..|+.....+.+.+ .+... ..+.+|++|+
T Consensus 78 ~v~~~~~~~~~~~g~id~lv~nAG~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~~~~~~~g~Iv~isS 157 (286)
T PRK07791 78 GAANLVDAAVETFGGLDVLVNNAGILRDRMIANMSEEEWDAVIAVHLKGHFATLRHAAAYWRAESKAGRAVDARIINTSS 157 (286)
T ss_pred HHHHHHHHHHHhcCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHccHHHHHHHHHHHHHHHHhcccCCCCCcEEEEeCc
Confidence 22222 24579999999874321 12222 34566766654444433 32210 1246676665
Q ss_pred ChhhHHHHHHHHCCCCCCCcEEEeecccHHHHHHHHHHHcCCCCCCeee
Q 019990 133 PANTNALILKEFAPSIPAKNITCLTRLDHNRAMGQISERLKVHVSDVKN 181 (332)
Q Consensus 133 p~~~~~~~~~~~~~~~~~~~i~~~t~l~~~r~~~~~a~~~~v~~~~v~~ 181 (332)
.... .+.+....|+.+|-....+.+.++..++ +..||.
T Consensus 158 ~~~~---------~~~~~~~~Y~asKaal~~l~~~la~el~--~~gIrV 195 (286)
T PRK07791 158 GAGL---------QGSVGQGNYSAAKAGIAALTLVAAAELG--RYGVTV 195 (286)
T ss_pred hhhC---------cCCCCchhhHHHHHHHHHHHHHHHHHHH--HhCeEE
Confidence 3221 1122223567777666677777777654 345664
|
|
| >PRK08017 oxidoreductase; Provisional | Back alignment and domain information |
|---|
Probab=97.80 E-value=0.00011 Score=65.32 Aligned_cols=151 Identities=16% Similarity=0.162 Sum_probs=81.5
Q ss_pred cEEEEEcCCChhHHHHHHHHHhcccCCCCCCeEEEEEecccchhhhhhhHhhhhhhcc-CCccceEEeCCHHHH---h--
Q 019990 6 LRVLVTGAAGQIGYALVPMIARGIMLGPDQPVILHMLDIEPAAEALNGVKMELIDAAF-PLLKGVVATTDVVEA---C-- 79 (332)
Q Consensus 6 ~kI~VtGaaG~IGs~l~~~L~~~~~~~~~~~~~i~l~D~~~~~~~~~~~~~dl~~~~~-~~~~~v~~~~~~~~a---~-- 79 (332)
++|+||||+|+||++++..|++.|. ++++++++. ++++. +.+... ....|+....++.++ +
T Consensus 3 k~vlVtGasg~IG~~la~~l~~~g~-------~v~~~~r~~--~~~~~----~~~~~~~~~~~D~~~~~~~~~~~~~i~~ 69 (256)
T PRK08017 3 KSVLITGCSSGIGLEAALELKRRGY-------RVLAACRKP--DDVAR----MNSLGFTGILLDLDDPESVERAADEVIA 69 (256)
T ss_pred CEEEEECCCChHHHHHHHHHHHCCC-------EEEEEeCCH--HHhHH----HHhCCCeEEEeecCCHHHHHHHHHHHHH
Confidence 4799999999999999999998875 788888753 22221 111111 111223222222221 1
Q ss_pred ---CCCcEEEEecCCCCC-C--CCCh---hHHHhhhHHHHHH----HHHHHHhhcCCCcEEEEEeCChhhHHHHHHHHCC
Q 019990 80 ---KDVNIAVMVGGFPRK-E--GMER---KDVMSKNVSIYKA----QASALEKHAAPNCKVLVVANPANTNALILKEFAP 146 (332)
Q Consensus 80 ---~~aDiVi~~ag~~~~-~--~~~~---~~~~~~N~~~~~~----i~~~i~~~~~~~~~viv~snp~~~~~~~~~~~~~ 146 (332)
...|.+|+.+|.... + ..+. .+.++.|+..... +++.+.+.. ...++++++-... .
T Consensus 70 ~~~~~~~~ii~~ag~~~~~~~~~~~~~~~~~~~~~n~~g~~~~~~~~~~~~~~~~--~~~iv~~ss~~~~---------~ 138 (256)
T PRK08017 70 LTDNRLYGLFNNAGFGVYGPLSTISRQQMEQQFSTNFFGTHQLTMLLLPAMLPHG--EGRIVMTSSVMGL---------I 138 (256)
T ss_pred hcCCCCeEEEECCCCCCccchhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHhhcC--CCEEEEEcCcccc---------c
Confidence 346899999886321 1 1122 2356677765544 455555543 2355666642111 1
Q ss_pred CCCCCcEEEeecccHHHHHHHHHHHcCCCCCCeeee
Q 019990 147 SIPAKNITCLTRLDHNRAMGQISERLKVHVSDVKNV 182 (332)
Q Consensus 147 ~~~~~~i~~~t~l~~~r~~~~~a~~~~v~~~~v~~~ 182 (332)
+.+....|+.++...+.+...++..+. ...++..
T Consensus 139 ~~~~~~~Y~~sK~~~~~~~~~l~~~~~--~~~i~v~ 172 (256)
T PRK08017 139 STPGRGAYAASKYALEAWSDALRMELR--HSGIKVS 172 (256)
T ss_pred CCCCccHHHHHHHHHHHHHHHHHHHHh--hcCCEEE
Confidence 123333567777777776666655433 3345543
|
|
| >PF00106 adh_short: short chain dehydrogenase alcohol dehydrogenase superfamily signature glucose/ribitol dehydrogenase family signature; InterPro: IPR002198 The short-chain dehydrogenases/reductases family (SDR) [] is a very large family of enzymes, most of which are known to be NAD- or NADP-dependent oxidoreductases | Back alignment and domain information |
|---|
Probab=97.80 E-value=8.9e-05 Score=61.47 Aligned_cols=149 Identities=16% Similarity=0.137 Sum_probs=81.3
Q ss_pred cEEEEEcCCChhHHHHHHHHHhcccCCCCCCeEEEEEecccchhhhhhhHhhhhhhc---cCCccceEEeCCHH------
Q 019990 6 LRVLVTGAAGQIGYALVPMIARGIMLGPDQPVILHMLDIEPAAEALNGVKMELIDAA---FPLLKGVVATTDVV------ 76 (332)
Q Consensus 6 ~kI~VtGaaG~IGs~l~~~L~~~~~~~~~~~~~i~l~D~~~~~~~~~~~~~dl~~~~---~~~~~~v~~~~~~~------ 76 (332)
+.++||||+|.||..++..|++.+- ..+.+++++++.+.......++.... .....|+....++.
T Consensus 1 k~~lItGa~~giG~~~a~~l~~~g~------~~v~~~~r~~~~~~~~~l~~~l~~~~~~~~~~~~D~~~~~~~~~~~~~~ 74 (167)
T PF00106_consen 1 KTVLITGASSGIGRALARALARRGA------RVVILTSRSEDSEGAQELIQELKAPGAKITFIECDLSDPESIRALIEEV 74 (167)
T ss_dssp EEEEEETTTSHHHHHHHHHHHHTTT------EEEEEEESSCHHHHHHHHHHHHHHTTSEEEEEESETTSHHHHHHHHHHH
T ss_pred CEEEEECCCCHHHHHHHHHHHhcCc------eEEEEeeeccccccccccccccccccccccccccccccccccccccccc
Confidence 3689999999999999999998743 27888887521223333333333211 01112222222222
Q ss_pred -HHhCCCcEEEEecCCCCCCC---CCh---hHHHhhhHHHHHHHHHHHHhhcCCCcEEEEEeCChhhHHHHHHHHCCCCC
Q 019990 77 -EACKDVNIAVMVGGFPRKEG---MER---KDVMSKNVSIYKAQASALEKHAAPNCKVLVVANPANTNALILKEFAPSIP 149 (332)
Q Consensus 77 -~a~~~aDiVi~~ag~~~~~~---~~~---~~~~~~N~~~~~~i~~~i~~~~~~~~~viv~snp~~~~~~~~~~~~~~~~ 149 (332)
+.....|++|+.+|...... .+. ...+..|+.....+.+.+.. . +...++++|+.... .+.+
T Consensus 75 ~~~~~~ld~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~-~-~~g~iv~~sS~~~~---------~~~~ 143 (167)
T PF00106_consen 75 IKRFGPLDILINNAGIFSDGSLDDLSEEELERVFRVNLFGPFLLAKALLP-Q-GGGKIVNISSIAGV---------RGSP 143 (167)
T ss_dssp HHHHSSESEEEEECSCTTSBSGGGSHHHHHHHHHHHHTHHHHHHHHHHHH-H-TTEEEEEEEEGGGT---------SSST
T ss_pred ccccccccccccccccccccccccccchhhhhccccccceeeeeeehhee-c-cccceEEecchhhc---------cCCC
Confidence 12347899999999864211 111 13556676666666666666 3 35677777764432 1222
Q ss_pred CCcEEEeecccHHHHHHHHHHH
Q 019990 150 AKNITCLTRLDHNRAMGQISER 171 (332)
Q Consensus 150 ~~~i~~~t~l~~~r~~~~~a~~ 171 (332)
..-.|+.++-.-..+...+++.
T Consensus 144 ~~~~Y~askaal~~~~~~la~e 165 (167)
T PF00106_consen 144 GMSAYSASKAALRGLTQSLAAE 165 (167)
T ss_dssp TBHHHHHHHHHHHHHHHHHHHH
T ss_pred CChhHHHHHHHHHHHHHHHHHh
Confidence 2223455554444554444443
|
As the first member of this family to be characterised was Drosophila alcohol dehydrogenase, this family used to be called [, , ] 'insect-type', or 'short-chain' alcohol dehydrogenases. Most member of this family are proteins of about 250 to 300 amino acid residues. Most dehydrogenases possess at least 2 domains [], the first binding the coenzyme, often NAD, and the second binding the substrate. This latter domain determines the substrate specificity and contains amino acids involved in catalysis. Little sequence similarity has been found in the coenzyme binding domain although there is a large degree of structural similarity, and it has therefore been suggested that the structure of dehydrogenases has arisen through gene fusion of a common ancestral coenzyme nucleotide sequence with various substrate specific domains [].; GO: 0016491 oxidoreductase activity, 0008152 metabolic process; PDB: 3QWI_D 3QWF_G 3IS3_A 3QWH_C 3ITD_A 3L77_A 1HDC_C 2HSD_C 3KVO_A 3KZV_A .... |
| >PRK08862 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=97.79 E-value=0.00086 Score=59.01 Aligned_cols=156 Identities=12% Similarity=0.006 Sum_probs=86.2
Q ss_pred CCCCCcEEEEEcCCChhHHHHHHHHHhcccCCCCCCeEEEEEecccchhhhhhhHhhhhhhcc---CCccceEEeCCHHH
Q 019990 1 MAKNPLRVLVTGAAGQIGYALVPMIARGIMLGPDQPVILHMLDIEPAAEALNGVKMELIDAAF---PLLKGVVATTDVVE 77 (332)
Q Consensus 1 m~~~~~kI~VtGaaG~IGs~l~~~L~~~~~~~~~~~~~i~l~D~~~~~~~~~~~~~dl~~~~~---~~~~~v~~~~~~~~ 77 (332)
|+...+.++||||++.||.+++..|++.|. +|.+++++. +.++....++..... .+..|+....++.+
T Consensus 1 ~~~~~k~~lVtGas~GIG~aia~~la~~G~-------~V~~~~r~~--~~l~~~~~~i~~~~~~~~~~~~D~~~~~~~~~ 71 (227)
T PRK08862 1 MDIKSSIILITSAGSVLGRTISCHFARLGA-------TLILCDQDQ--SALKDTYEQCSALTDNVYSFQLKDFSQESIRH 71 (227)
T ss_pred CCCCCeEEEEECCccHHHHHHHHHHHHCCC-------EEEEEcCCH--HHHHHHHHHHHhcCCCeEEEEccCCCHHHHHH
Confidence 666678899999999999999999999886 788888754 333333323322110 11123333222222
Q ss_pred -------HhC-CCcEEEEecCCCCC--C--CCChhH---HHhhhHHH----HHHHHHHHHhhcCCCcEEEEEeCChhhHH
Q 019990 78 -------ACK-DVNIAVMVGGFPRK--E--GMERKD---VMSKNVSI----YKAQASALEKHAAPNCKVLVVANPANTNA 138 (332)
Q Consensus 78 -------a~~-~aDiVi~~ag~~~~--~--~~~~~~---~~~~N~~~----~~~i~~~i~~~~~~~~~viv~snp~~~~~ 138 (332)
.+. ..|++|+.||.... + ..+.++ .+..|... .+.++..+.+.. ..+.++++|+..
T Consensus 72 ~~~~~~~~~g~~iD~li~nag~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~m~~~~-~~g~Iv~isS~~---- 146 (227)
T PRK08862 72 LFDAIEQQFNRAPDVLVNNWTSSPLPSLFDEQPSESFIQQLSSLASTLFTYGQVAAERMRKRN-KKGVIVNVISHD---- 146 (227)
T ss_pred HHHHHHHHhCCCCCEEEECCccCCCCCccccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcC-CCceEEEEecCC----
Confidence 223 68999999974211 1 123222 22334333 234445555432 235666666421
Q ss_pred HHHHHHCCCCCCCcEEEeecccHHHHHHHHHHHcCCCCCCee
Q 019990 139 LILKEFAPSIPAKNITCLTRLDHNRAMGQISERLKVHVSDVK 180 (332)
Q Consensus 139 ~~~~~~~~~~~~~~i~~~t~l~~~r~~~~~a~~~~v~~~~v~ 180 (332)
+++....|+.+|-.-..+.+.++..+. +..+|
T Consensus 147 --------~~~~~~~Y~asKaal~~~~~~la~el~--~~~Ir 178 (227)
T PRK08862 147 --------DHQDLTGVESSNALVSGFTHSWAKELT--PFNIR 178 (227)
T ss_pred --------CCCCcchhHHHHHHHHHHHHHHHHHHh--hcCcE
Confidence 112222456677777777777777653 34455
|
|
| >PRK06125 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=97.79 E-value=0.00037 Score=62.32 Aligned_cols=119 Identities=19% Similarity=0.175 Sum_probs=67.3
Q ss_pred CCCcEEEEEcCCChhHHHHHHHHHhcccCCCCCCeEEEEEecccchhhhhhhHhhhhhh-c--c-CCccceEEeCCHHH-
Q 019990 3 KNPLRVLVTGAAGQIGYALVPMIARGIMLGPDQPVILHMLDIEPAAEALNGVKMELIDA-A--F-PLLKGVVATTDVVE- 77 (332)
Q Consensus 3 ~~~~kI~VtGaaG~IGs~l~~~L~~~~~~~~~~~~~i~l~D~~~~~~~~~~~~~dl~~~-~--~-~~~~~v~~~~~~~~- 77 (332)
...++++||||+|.+|.+++..|++.|. +|.+++++. +.+.....++... . . ....|+....++.+
T Consensus 5 ~~~k~vlItG~~~giG~~ia~~l~~~G~-------~V~~~~r~~--~~~~~~~~~l~~~~~~~~~~~~~D~~~~~~~~~~ 75 (259)
T PRK06125 5 LAGKRVLITGASKGIGAAAAEAFAAEGC-------HLHLVARDA--DALEALAADLRAAHGVDVAVHALDLSSPEAREQL 75 (259)
T ss_pred CCCCEEEEeCCCchHHHHHHHHHHHcCC-------EEEEEeCCH--HHHHHHHHHHHhhcCCceEEEEecCCCHHHHHHH
Confidence 3567899999999999999999998875 789998753 2333222223211 0 0 01123333333322
Q ss_pred --HhCCCcEEEEecCCCCC-C--CCChh---HHHhhhHHHHHHHHH----HHHhhcCCCcEEEEEeC
Q 019990 78 --ACKDVNIAVMVGGFPRK-E--GMERK---DVMSKNVSIYKAQAS----ALEKHAAPNCKVLVVAN 132 (332)
Q Consensus 78 --a~~~aDiVi~~ag~~~~-~--~~~~~---~~~~~N~~~~~~i~~----~i~~~~~~~~~viv~sn 132 (332)
.+...|++|+.+|.... + ..+.+ ..+..|+.....+.+ .+++. ....++++++
T Consensus 76 ~~~~g~id~lv~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~--~~g~iv~iss 140 (259)
T PRK06125 76 AAEAGDIDILVNNAGAIPGGGLDDVDDAAWRAGWELKVFGYIDLTRLAYPRMKAR--GSGVIVNVIG 140 (259)
T ss_pred HHHhCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHc--CCcEEEEecC
Confidence 23468999999986421 1 12222 235566655444444 44443 2345666554
|
|
| >COG1250 FadB 3-hydroxyacyl-CoA dehydrogenase [Lipid metabolism] | Back alignment and domain information |
|---|
Probab=97.79 E-value=0.00024 Score=64.92 Aligned_cols=104 Identities=26% Similarity=0.358 Sum_probs=67.4
Q ss_pred CcEEEEEcCCChhHHHHHHHHHhcccCCCCCCeEEEEEecccchhhhhh---hHhh-hhhhc----c------CCccceE
Q 019990 5 PLRVLVTGAAGQIGYALVPMIARGIMLGPDQPVILHMLDIEPAAEALNG---VKME-LIDAA----F------PLLKGVV 70 (332)
Q Consensus 5 ~~kI~VtGaaG~IGs~l~~~L~~~~~~~~~~~~~i~l~D~~~~~~~~~~---~~~d-l~~~~----~------~~~~~v~ 70 (332)
.+||+|+| +|.+|+.+|..++..|+ +|+++|++. +.+.. .... +.... . .....++
T Consensus 3 i~kv~ViG-aG~MG~gIA~~~A~~G~-------~V~l~D~~~--~~~~~~~~~i~~~l~k~~~~g~l~~~~~~~~l~~i~ 72 (307)
T COG1250 3 IKKVAVIG-AGVMGAGIAAVFALAGY-------DVVLKDISP--EALERALAYIEKNLEKLVEKGKLTEEEADAALARIT 72 (307)
T ss_pred ccEEEEEc-ccchhHHHHHHHhhcCC-------ceEEEeCCH--HHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHhhcc
Confidence 46899999 69999999999988666 899999873 22211 1111 11110 0 0123455
Q ss_pred EeCCHHHHhCCCcEEEEecCCCCCCCCChhHHHhhhHHHHHHHHHHHHhhcCCCcEEEEEeCChh
Q 019990 71 ATTDVVEACKDVNIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEKHAAPNCKVLVVANPAN 135 (332)
Q Consensus 71 ~~~~~~~a~~~aDiVi~~ag~~~~~~~~~~~~~~~N~~~~~~i~~~i~~~~~~~~~viv~snp~~ 135 (332)
..+++ .++++||+||-.. ..|.+.-+++...+.++++|++ |++||.+.
T Consensus 73 ~~~~~-~~l~~~DlVIEAv--------------~E~levK~~vf~~l~~~~~~~a--IlASNTSs 120 (307)
T COG1250 73 PTTDL-AALKDADLVIEAV--------------VEDLELKKQVFAELEALAKPDA--ILASNTSS 120 (307)
T ss_pred ccCch-hHhccCCEEEEec--------------cccHHHHHHHHHHHHhhcCCCc--EEeeccCC
Confidence 45554 3799999998652 1245566788888888886665 66787543
|
|
| >PRK06079 enoyl-(acyl carrier protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=97.78 E-value=0.00019 Score=64.03 Aligned_cols=160 Identities=13% Similarity=0.156 Sum_probs=88.3
Q ss_pred CCC--CCcEEEEEcCC--ChhHHHHHHHHHhcccCCCCCCeEEEEEecccchhhhhhhHhhhhhhc-cCCccceEEeCCH
Q 019990 1 MAK--NPLRVLVTGAA--GQIGYALVPMIARGIMLGPDQPVILHMLDIEPAAEALNGVKMELIDAA-FPLLKGVVATTDV 75 (332)
Q Consensus 1 m~~--~~~kI~VtGaa--G~IGs~l~~~L~~~~~~~~~~~~~i~l~D~~~~~~~~~~~~~dl~~~~-~~~~~~v~~~~~~ 75 (332)
|+. +.+.++||||+ +.||..++..|++.|. +|++.+++. .......++.... ..+..|+....+.
T Consensus 1 ~~~~l~~k~~lItGas~~~gIG~a~a~~la~~G~-------~Vi~~~r~~---~~~~~~~~~~~~~~~~~~~Dl~~~~~v 70 (252)
T PRK06079 1 MSGILSGKKIVVMGVANKRSIAWGCAQAIKDQGA-------TVIYTYQND---RMKKSLQKLVDEEDLLVECDVASDESI 70 (252)
T ss_pred CccccCCCEEEEeCCCCCCchHHHHHHHHHHCCC-------EEEEecCch---HHHHHHHhhccCceeEEeCCCCCHHHH
Confidence 554 34779999988 6899999999999885 788887642 2222222221111 1112344433333
Q ss_pred HHH-------hCCCcEEEEecCCCCC-------CCCChhH---HHhhhHHHHHHHHHHHHhhcCCCcEEEEEeCChhhHH
Q 019990 76 VEA-------CKDVNIAVMVGGFPRK-------EGMERKD---VMSKNVSIYKAQASALEKHAAPNCKVLVVANPANTNA 138 (332)
Q Consensus 76 ~~a-------~~~aDiVi~~ag~~~~-------~~~~~~~---~~~~N~~~~~~i~~~i~~~~~~~~~viv~snp~~~~~ 138 (332)
.++ +...|++|+.||.... ...+.++ .+..|+.....+.+.+..+-...++++++++-...
T Consensus 71 ~~~~~~~~~~~g~iD~lv~nAg~~~~~~~~~~~~~~~~~~~~~~~~in~~~~~~l~~~~~~~~~~~g~Iv~iss~~~~-- 148 (252)
T PRK06079 71 ERAFATIKERVGKIDGIVHAIAYAKKEELGGNVTDTSRDGYALAQDISAYSLIAVAKYARPLLNPGASIVTLTYFGSE-- 148 (252)
T ss_pred HHHHHHHHHHhCCCCEEEEcccccccccccCCcccCCHHHHHHHhCcccHHHHHHHHHHHHhcccCceEEEEeccCcc--
Confidence 222 2357999999986421 1122222 34556655444444444332123566666642211
Q ss_pred HHHHHHCCCCCCCcEEEeecccHHHHHHHHHHHcCCCCCCeee
Q 019990 139 LILKEFAPSIPAKNITCLTRLDHNRAMGQISERLKVHVSDVKN 181 (332)
Q Consensus 139 ~~~~~~~~~~~~~~i~~~t~l~~~r~~~~~a~~~~v~~~~v~~ 181 (332)
.+.+....|+.+|-.-..+.+.++..+. +..|+.
T Consensus 149 -------~~~~~~~~Y~asKaal~~l~~~la~el~--~~gI~v 182 (252)
T PRK06079 149 -------RAIPNYNVMGIAKAALESSVRYLARDLG--KKGIRV 182 (252)
T ss_pred -------ccCCcchhhHHHHHHHHHHHHHHHHHhh--hcCcEE
Confidence 1122223567788888888888887764 455664
|
|
| >PRK08594 enoyl-(acyl carrier protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=97.78 E-value=0.00036 Score=62.53 Aligned_cols=160 Identities=11% Similarity=0.094 Sum_probs=87.1
Q ss_pred CCcEEEEEcCC--ChhHHHHHHHHHhcccCCCCCCeEEEEEecccc-hhhhhhhHhhhhhhcc-CCccceEEeCCHHHH-
Q 019990 4 NPLRVLVTGAA--GQIGYALVPMIARGIMLGPDQPVILHMLDIEPA-AEALNGVKMELIDAAF-PLLKGVVATTDVVEA- 78 (332)
Q Consensus 4 ~~~kI~VtGaa--G~IGs~l~~~L~~~~~~~~~~~~~i~l~D~~~~-~~~~~~~~~dl~~~~~-~~~~~v~~~~~~~~a- 78 (332)
..+.++||||+ +-||.++++.|++.|. +|.+.+++.. .+.++....++..... ....|+....+..+.
T Consensus 6 ~~k~~lItGa~~s~GIG~aia~~la~~G~-------~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dv~d~~~v~~~~ 78 (257)
T PRK08594 6 EGKTYVVMGVANKRSIAWGIARSLHNAGA-------KLVFTYAGERLEKEVRELADTLEGQESLLLPCDVTSDEEITACF 78 (257)
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHHHCCC-------EEEEecCcccchHHHHHHHHHcCCCceEEEecCCCCHHHHHHHH
Confidence 34689999986 7999999999999885 7888875321 1122222222211101 112344433333222
Q ss_pred ------hCCCcEEEEecCCCCC-----C--CCChhH---HHhhhHHHHHHHHHHHHhhcCCCcEEEEEeCChhhHHHHHH
Q 019990 79 ------CKDVNIAVMVGGFPRK-----E--GMERKD---VMSKNVSIYKAQASALEKHAAPNCKVLVVANPANTNALILK 142 (332)
Q Consensus 79 ------~~~aDiVi~~ag~~~~-----~--~~~~~~---~~~~N~~~~~~i~~~i~~~~~~~~~viv~snp~~~~~~~~~ 142 (332)
+...|++|+.||.... + ..+.++ .+..|......+.+.+...-.+.+.+|++|+....
T Consensus 79 ~~~~~~~g~ld~lv~nag~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~g~Iv~isS~~~~------ 152 (257)
T PRK08594 79 ETIKEEVGVIHGVAHCIAFANKEDLRGEFLETSRDGFLLAQNISAYSLTAVAREAKKLMTEGGSIVTLTYLGGE------ 152 (257)
T ss_pred HHHHHhCCCccEEEECcccCCCCcCCCccccCCHHHHHHHHhhhHHHHHHHHHHHHHhcccCceEEEEcccCCc------
Confidence 2357999999986421 1 122222 23445554444444443332234567777753221
Q ss_pred HHCCCCCCCcEEEeecccHHHHHHHHHHHcCCCCCCeee
Q 019990 143 EFAPSIPAKNITCLTRLDHNRAMGQISERLKVHVSDVKN 181 (332)
Q Consensus 143 ~~~~~~~~~~i~~~t~l~~~r~~~~~a~~~~v~~~~v~~ 181 (332)
.+.+....|+.+|..-..+.+.++..+. +..||.
T Consensus 153 ---~~~~~~~~Y~asKaal~~l~~~la~el~--~~gIrv 186 (257)
T PRK08594 153 ---RVVQNYNVMGVAKASLEASVKYLANDLG--KDGIRV 186 (257)
T ss_pred ---cCCCCCchhHHHHHHHHHHHHHHHHHhh--hcCCEE
Confidence 1122223578888888888888888764 345653
|
|
| >PRK05808 3-hydroxybutyryl-CoA dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=97.78 E-value=0.00052 Score=62.51 Aligned_cols=103 Identities=25% Similarity=0.384 Sum_probs=62.3
Q ss_pred CcEEEEEcCCChhHHHHHHHHHhcccCCCCCCeEEEEEecccchhhhh-hh--H----hhhhhhc-cC------CccceE
Q 019990 5 PLRVLVTGAAGQIGYALVPMIARGIMLGPDQPVILHMLDIEPAAEALN-GV--K----MELIDAA-FP------LLKGVV 70 (332)
Q Consensus 5 ~~kI~VtGaaG~IGs~l~~~L~~~~~~~~~~~~~i~l~D~~~~~~~~~-~~--~----~dl~~~~-~~------~~~~v~ 70 (332)
++||+|+| +|.+|..++..|+..++ +|+++|.+.. .+. +. . ..+.+.. .. ...+++
T Consensus 3 ~~kI~VIG-~G~mG~~ia~~la~~g~-------~V~~~d~~~~--~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~l~ 72 (282)
T PRK05808 3 IQKIGVIG-AGTMGNGIAQVCAVAGY-------DVVMVDISDA--AVDRGLATITKSLDRLVKKGKMTEADKEAALARIT 72 (282)
T ss_pred ccEEEEEc-cCHHHHHHHHHHHHCCC-------ceEEEeCCHH--HHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeE
Confidence 45899999 69999999999998876 7999998642 221 10 0 0111100 00 112455
Q ss_pred EeCCHHHHhCCCcEEEEecCCCCCCCCChhHHHhhhHHHHHHHHHHHHhhcCCCcEEEEEeCCh
Q 019990 71 ATTDVVEACKDVNIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEKHAAPNCKVLVVANPA 134 (332)
Q Consensus 71 ~~~~~~~a~~~aDiVi~~ag~~~~~~~~~~~~~~~N~~~~~~i~~~i~~~~~~~~~viv~snp~ 134 (332)
.+++. +++++||+||.++- + +...-+++...+.++++++..+ .||..
T Consensus 73 ~~~~~-~~~~~aDlVi~av~----e----------~~~~k~~~~~~l~~~~~~~~il--~s~ts 119 (282)
T PRK05808 73 GTTDL-DDLKDADLVIEAAT----E----------NMDLKKKIFAQLDEIAKPEAIL--ATNTS 119 (282)
T ss_pred EeCCH-HHhccCCeeeeccc----c----------cHHHHHHHHHHHHhhCCCCcEE--EECCC
Confidence 56665 45899999998741 0 1233346666677776556533 45433
|
|
| >PRK07530 3-hydroxybutyryl-CoA dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=97.78 E-value=0.00045 Score=63.24 Aligned_cols=75 Identities=20% Similarity=0.258 Sum_probs=49.0
Q ss_pred CCcEEEEEcCCChhHHHHHHHHHhcccCCCCCCeEEEEEecccchhhhhhhHhhhh----h----hccC------Cccce
Q 019990 4 NPLRVLVTGAAGQIGYALVPMIARGIMLGPDQPVILHMLDIEPAAEALNGVKMELI----D----AAFP------LLKGV 69 (332)
Q Consensus 4 ~~~kI~VtGaaG~IGs~l~~~L~~~~~~~~~~~~~i~l~D~~~~~~~~~~~~~dl~----~----~~~~------~~~~v 69 (332)
+.+||+|+| +|.+|+.++..|+..|+ +|.++|.+. +.+......+. . ...+ ...++
T Consensus 3 ~~~kI~vIG-aG~mG~~iA~~la~~G~-------~V~l~d~~~--~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i 72 (292)
T PRK07530 3 AIKKVGVIG-AGQMGNGIAHVCALAGY-------DVLLNDVSA--DRLEAGLATINGNLARQVAKGKISEEARAAALARI 72 (292)
T ss_pred CCCEEEEEC-CcHHHHHHHHHHHHCCC-------eEEEEeCCH--HHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCe
Confidence 457899999 69999999999998886 899999864 22222111111 0 0000 01345
Q ss_pred EEeCCHHHHhCCCcEEEEec
Q 019990 70 VATTDVVEACKDVNIAVMVG 89 (332)
Q Consensus 70 ~~~~~~~~a~~~aDiVi~~a 89 (332)
+...++ +++++||+||.+.
T Consensus 73 ~~~~~~-~~~~~aD~Vieav 91 (292)
T PRK07530 73 STATDL-EDLADCDLVIEAA 91 (292)
T ss_pred EeeCCH-HHhcCCCEEEEcC
Confidence 555665 5689999999874
|
|
| >PRK07984 enoyl-(acyl carrier protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=97.76 E-value=0.00016 Score=65.08 Aligned_cols=160 Identities=19% Similarity=0.209 Sum_probs=88.4
Q ss_pred CCC-CCcEEEEEcCCC--hhHHHHHHHHHhcccCCCCCCeEEEEEecccchhhhhhhHhhhhhhc---cCCccceEEeCC
Q 019990 1 MAK-NPLRVLVTGAAG--QIGYALVPMIARGIMLGPDQPVILHMLDIEPAAEALNGVKMELIDAA---FPLLKGVVATTD 74 (332)
Q Consensus 1 m~~-~~~kI~VtGaaG--~IGs~l~~~L~~~~~~~~~~~~~i~l~D~~~~~~~~~~~~~dl~~~~---~~~~~~v~~~~~ 74 (332)
|.+ +.+.++||||++ .||.+++..|++.|. .|++.+++. .+.....++.... ..+..|+....+
T Consensus 1 ~~~l~~k~~lITGas~~~GIG~aia~~la~~G~-------~vil~~r~~---~~~~~~~~~~~~~~~~~~~~~Dl~~~~~ 70 (262)
T PRK07984 1 MGFLSGKRILVTGVASKLSIAYGIAQAMHREGA-------ELAFTYQND---KLKGRVEEFAAQLGSDIVLPCDVAEDAS 70 (262)
T ss_pred CcccCCCEEEEeCCCCCccHHHHHHHHHHHCCC-------EEEEEecch---hHHHHHHHHHhccCCceEeecCCCCHHH
Confidence 443 346799999874 799999999999885 788887642 2222222332110 112234544333
Q ss_pred HHHH-------hCCCcEEEEecCCCCCC--------CCChhH---HHhhhHHHHHHHHHHHHhhcCCCcEEEEEeCChhh
Q 019990 75 VVEA-------CKDVNIAVMVGGFPRKE--------GMERKD---VMSKNVSIYKAQASALEKHAAPNCKVLVVANPANT 136 (332)
Q Consensus 75 ~~~a-------~~~aDiVi~~ag~~~~~--------~~~~~~---~~~~N~~~~~~i~~~i~~~~~~~~~viv~snp~~~ 136 (332)
+.+. +-..|++|+.||..... ..+.++ .+..|......+.+.+...-.+++.++++|+-...
T Consensus 71 v~~~~~~~~~~~g~iD~linnAg~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~g~Iv~iss~~~~ 150 (262)
T PRK07984 71 IDAMFAELGKVWPKFDGFVHSIGFAPGDQLDGDYVNAVTREGFKIAHDISSYSFVAMAKACRSMLNPGSALLTLSYLGAE 150 (262)
T ss_pred HHHHHHHHHhhcCCCCEEEECCccCCccccCCcchhhcCHHHHHHHhhhhhHHHHHHHHHHHHHhcCCcEEEEEecCCCC
Confidence 3322 22479999999863211 112222 34556554444444433321133566666642210
Q ss_pred HHHHHHHHCCCCCCCcEEEeecccHHHHHHHHHHHcCCCCCCeee
Q 019990 137 NALILKEFAPSIPAKNITCLTRLDHNRAMGQISERLKVHVSDVKN 181 (332)
Q Consensus 137 ~~~~~~~~~~~~~~~~i~~~t~l~~~r~~~~~a~~~~v~~~~v~~ 181 (332)
.+.+....|+.+|-.-..+.+.++..+. +..||.
T Consensus 151 ---------~~~~~~~~Y~asKaal~~l~~~la~el~--~~gIrV 184 (262)
T PRK07984 151 ---------RAIPNYNVMGLAKASLEANVRYMANAMG--PEGVRV 184 (262)
T ss_pred ---------CCCCCcchhHHHHHHHHHHHHHHHHHhc--ccCcEE
Confidence 1223233578888888888888888764 456664
|
|
| >PF05368 NmrA: NmrA-like family; InterPro: IPR008030 NmrA is a negative transcriptional regulator involved in the post-translational modification of the transcription factor AreA | Back alignment and domain information |
|---|
Probab=97.75 E-value=0.00014 Score=64.03 Aligned_cols=101 Identities=20% Similarity=0.196 Sum_probs=62.6
Q ss_pred EEEEcCCChhHHHHHHHHHhcccCCCCCCeEEEEEecccchhhhhhhHhhhhhhcc-CCccceEEeCCHHHHhCCCcEEE
Q 019990 8 VLVTGAAGQIGYALVPMIARGIMLGPDQPVILHMLDIEPAAEALNGVKMELIDAAF-PLLKGVVATTDVVEACKDVNIAV 86 (332)
Q Consensus 8 I~VtGaaG~IGs~l~~~L~~~~~~~~~~~~~i~l~D~~~~~~~~~~~~~dl~~~~~-~~~~~v~~~~~~~~a~~~aDiVi 86 (332)
|+|+||+|.+|++++..|++.++ +|+++=++.+.+. ...+.+... ....++.....+.++++++|.||
T Consensus 1 I~V~GatG~~G~~v~~~L~~~~~-------~V~~l~R~~~~~~----~~~l~~~g~~vv~~d~~~~~~l~~al~g~d~v~ 69 (233)
T PF05368_consen 1 ILVTGATGNQGRSVVRALLSAGF-------SVRALVRDPSSDR----AQQLQALGAEVVEADYDDPESLVAALKGVDAVF 69 (233)
T ss_dssp EEEETTTSHHHHHHHHHHHHTTG-------CEEEEESSSHHHH----HHHHHHTTTEEEES-TT-HHHHHHHHTTCSEEE
T ss_pred CEEECCccHHHHHHHHHHHhCCC-------CcEEEEeccchhh----hhhhhcccceEeecccCCHHHHHHHHcCCceEE
Confidence 79999999999999999998665 6777766542211 122322211 11234444556788999999999
Q ss_pred EecCCCCCCCCChhHHHhhhHHHHHHHHHHHHhhcCCCcEEEEEeC
Q 019990 87 MVGGFPRKEGMERKDVMSKNVSIYKAQASALEKHAAPNCKVLVVAN 132 (332)
Q Consensus 87 ~~ag~~~~~~~~~~~~~~~N~~~~~~i~~~i~~~~~~~~~viv~sn 132 (332)
++-+... ..+ .+...++++++.+.+ ++.++.|.
T Consensus 70 ~~~~~~~---~~~-------~~~~~~li~Aa~~ag---Vk~~v~ss 102 (233)
T PF05368_consen 70 SVTPPSH---PSE-------LEQQKNLIDAAKAAG---VKHFVPSS 102 (233)
T ss_dssp EESSCSC---CCH-------HHHHHHHHHHHHHHT----SEEEESE
T ss_pred eecCcch---hhh-------hhhhhhHHHhhhccc---cceEEEEE
Confidence 8865432 111 344567888888875 44444553
|
NmrA is part of a system controlling nitrogen metabolite repression in fungi []. This family only contains a few sequences as iteration results in significant matches to other Rossmann fold families.; PDB: 2ZCV_A 2ZCU_A 2R6J_B 3C3X_A 2QZZ_B 2QYS_A 2QX7_A 2QW8_A 2R2G_B 3E5M_B .... |
| >PRK08690 enoyl-(acyl carrier protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=97.73 E-value=0.00075 Score=60.62 Aligned_cols=157 Identities=13% Similarity=0.161 Sum_probs=84.0
Q ss_pred CcEEEEEcC--CChhHHHHHHHHHhcccCCCCCCeEEEEEecccchhhhhhhHhhhhhh---ccCCccceEEeCCHHHH-
Q 019990 5 PLRVLVTGA--AGQIGYALVPMIARGIMLGPDQPVILHMLDIEPAAEALNGVKMELIDA---AFPLLKGVVATTDVVEA- 78 (332)
Q Consensus 5 ~~kI~VtGa--aG~IGs~l~~~L~~~~~~~~~~~~~i~l~D~~~~~~~~~~~~~dl~~~---~~~~~~~v~~~~~~~~a- 78 (332)
.+.++|||| ++.||.+++..|++.|. +|++.++.. +......++... ...+..|+....++.+.
T Consensus 6 ~k~~lITGa~~~~GIG~a~a~~l~~~G~-------~v~~~~~~~---~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~ 75 (261)
T PRK08690 6 GKKILITGMISERSIAYGIAKACREQGA-------ELAFTYVVD---KLEERVRKMAAELDSELVFRCDVASDDEINQVF 75 (261)
T ss_pred CcEEEEECCCCCCcHHHHHHHHHHHCCC-------EEEEEcCcH---HHHHHHHHHHhccCCceEEECCCCCHHHHHHHH
Confidence 467999996 56899999999998885 777776532 111112222111 01122345443333322
Q ss_pred ------hCCCcEEEEecCCCCC-----C---CCChhH---HHhhhHHHHHHHHHHHHhhc-CCCcEEEEEeCChhhHHHH
Q 019990 79 ------CKDVNIAVMVGGFPRK-----E---GMERKD---VMSKNVSIYKAQASALEKHA-APNCKVLVVANPANTNALI 140 (332)
Q Consensus 79 ------~~~aDiVi~~ag~~~~-----~---~~~~~~---~~~~N~~~~~~i~~~i~~~~-~~~~~viv~snp~~~~~~~ 140 (332)
+...|++|+.||.... + ..+..+ .+..|+.....+.+.+...- ...+.++++|+....
T Consensus 76 ~~~~~~~g~iD~lVnnAG~~~~~~~~~~~~~~~~~~~~~~~~~vn~~~~~~l~~~~~p~m~~~~g~Iv~iss~~~~---- 151 (261)
T PRK08690 76 ADLGKHWDGLDGLVHSIGFAPKEALSGDFLDSISREAFNTAHEISAYSLPALAKAARPMMRGRNSAIVALSYLGAV---- 151 (261)
T ss_pred HHHHHHhCCCcEEEECCccCCccccccchhhhcCHHHHHHHHHhchHHHHHHHHHHHHHhhhcCcEEEEEcccccc----
Confidence 2358999999987432 1 122222 23445544333333322210 112456666653221
Q ss_pred HHHHCCCCCCCcEEEeecccHHHHHHHHHHHcCCCCCCeeee
Q 019990 141 LKEFAPSIPAKNITCLTRLDHNRAMGQISERLKVHVSDVKNV 182 (332)
Q Consensus 141 ~~~~~~~~~~~~i~~~t~l~~~r~~~~~a~~~~v~~~~v~~~ 182 (332)
.+.|....|+.+|-.-..+.+.++..+. +..||..
T Consensus 152 -----~~~~~~~~Y~asKaal~~l~~~la~e~~--~~gIrVn 186 (261)
T PRK08690 152 -----RAIPNYNVMGMAKASLEAGIRFTAACLG--KEGIRCN 186 (261)
T ss_pred -----cCCCCcccchhHHHHHHHHHHHHHHHhh--hcCeEEE
Confidence 1223334678888877788777877654 4556643
|
|
| >PRK07041 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=97.73 E-value=0.0001 Score=64.59 Aligned_cols=145 Identities=14% Similarity=0.073 Sum_probs=80.0
Q ss_pred EEEcCCChhHHHHHHHHHhcccCCCCCCeEEEEEecccchhhhhhhHhhhhh-hcc-CCccceEEeCCHHHHhC---CCc
Q 019990 9 LVTGAAGQIGYALVPMIARGIMLGPDQPVILHMLDIEPAAEALNGVKMELID-AAF-PLLKGVVATTDVVEACK---DVN 83 (332)
Q Consensus 9 ~VtGaaG~IGs~l~~~L~~~~~~~~~~~~~i~l~D~~~~~~~~~~~~~dl~~-~~~-~~~~~v~~~~~~~~a~~---~aD 83 (332)
+||||+|++|++++..|++.|. +|++++++. +.+.....++.. ... ....|+....++.++++ ..|
T Consensus 1 lItGas~~iG~~~a~~l~~~G~-------~v~~~~r~~--~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~id 71 (230)
T PRK07041 1 LVVGGSSGIGLALARAFAAEGA-------RVTIASRSR--DRLAAAARALGGGAPVRTAALDITDEAAVDAFFAEAGPFD 71 (230)
T ss_pred CeecCCChHHHHHHHHHHHCCC-------EEEEEeCCH--HHHHHHHHHHhcCCceEEEEccCCCHHHHHHHHHhcCCCC
Confidence 4899999999999999999885 789998753 223222222211 001 11234444444444443 479
Q ss_pred EEEEecCCCCCC---CCC---hhHHHhhhHHHHHHHHHHHHhhcCCCcEEEEEeCChhhHHHHHHHHCCCCCCCcEEEee
Q 019990 84 IAVMVGGFPRKE---GME---RKDVMSKNVSIYKAQASALEKHAAPNCKVLVVANPANTNALILKEFAPSIPAKNITCLT 157 (332)
Q Consensus 84 iVi~~ag~~~~~---~~~---~~~~~~~N~~~~~~i~~~i~~~~~~~~~viv~snp~~~~~~~~~~~~~~~~~~~i~~~t 157 (332)
++||.+|..... ..+ -...+..|......+.+.... . +..++++++.-.. + .+.++...|+.+
T Consensus 72 ~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~-~-~~g~iv~~ss~~~---~------~~~~~~~~Y~~s 140 (230)
T PRK07041 72 HVVITAADTPGGPVRALPLAAAQAAMDSKFWGAYRVARAARI-A-PGGSLTFVSGFAA---V------RPSASGVLQGAI 140 (230)
T ss_pred EEEECCCCCCCCChhhCCHHHHHHHHHHHHHHHHHHHhhhhh-c-CCeEEEEECchhh---c------CCCCcchHHHHH
Confidence 999999863221 111 123456777777676663332 2 3346666553211 0 122333345666
Q ss_pred cccHHHHHHHHHHHcC
Q 019990 158 RLDHNRAMGQISERLK 173 (332)
Q Consensus 158 ~l~~~r~~~~~a~~~~ 173 (332)
+.....+.+.++..+.
T Consensus 141 K~a~~~~~~~la~e~~ 156 (230)
T PRK07041 141 NAALEALARGLALELA 156 (230)
T ss_pred HHHHHHHHHHHHHHhh
Confidence 6655566556665543
|
|
| >PRK06603 enoyl-(acyl carrier protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=97.71 E-value=0.00061 Score=61.15 Aligned_cols=156 Identities=11% Similarity=0.118 Sum_probs=88.0
Q ss_pred CcEEEEEcCCC--hhHHHHHHHHHhcccCCCCCCeEEEEEecccchhhhhhhHhhhhhh---ccCCccceEEeCCHHHH-
Q 019990 5 PLRVLVTGAAG--QIGYALVPMIARGIMLGPDQPVILHMLDIEPAAEALNGVKMELIDA---AFPLLKGVVATTDVVEA- 78 (332)
Q Consensus 5 ~~kI~VtGaaG--~IGs~l~~~L~~~~~~~~~~~~~i~l~D~~~~~~~~~~~~~dl~~~---~~~~~~~v~~~~~~~~a- 78 (332)
.+.++||||++ -||.+++..|++.|. +|.+.+++. .......++... ......|+....++.+.
T Consensus 8 ~k~~lITGas~~~GIG~a~a~~la~~G~-------~v~~~~r~~---~~~~~~~~l~~~~g~~~~~~~Dv~~~~~v~~~~ 77 (260)
T PRK06603 8 GKKGLITGIANNMSISWAIAQLAKKHGA-------ELWFTYQSE---VLEKRVKPLAEEIGCNFVSELDVTNPKSISNLF 77 (260)
T ss_pred CcEEEEECCCCCcchHHHHHHHHHHcCC-------EEEEEeCch---HHHHHHHHHHHhcCCceEEEccCCCHHHHHHHH
Confidence 45789999886 699999999998875 788877642 111112223211 01112344443333322
Q ss_pred ------hCCCcEEEEecCCCCC-----C--CCChh---HHHhhhHHHHHHHHHHHHhhcCCCcEEEEEeCChhhHHHHHH
Q 019990 79 ------CKDVNIAVMVGGFPRK-----E--GMERK---DVMSKNVSIYKAQASALEKHAAPNCKVLVVANPANTNALILK 142 (332)
Q Consensus 79 ------~~~aDiVi~~ag~~~~-----~--~~~~~---~~~~~N~~~~~~i~~~i~~~~~~~~~viv~snp~~~~~~~~~ 142 (332)
+...|++|+.||.... + ..+.+ ..+..|......+.+.+...-...+++|++++....
T Consensus 78 ~~~~~~~g~iDilVnnag~~~~~~~~~~~~~~~~~~~~~~~~vn~~~~~~~~~~~~~~m~~~G~Iv~isS~~~~------ 151 (260)
T PRK06603 78 DDIKEKWGSFDFLLHGMAFADKNELKGRYVDTSLENFHNSLHISCYSLLELSRSAEALMHDGGSIVTLTYYGAE------ 151 (260)
T ss_pred HHHHHHcCCccEEEEccccCCcccccCccccCCHHHHHHHHHHHHHHHHHHHHHHHhhhccCceEEEEecCccc------
Confidence 3457999999886321 1 12222 234556655555555443322223567777753221
Q ss_pred HHCCCCCCCcEEEeecccHHHHHHHHHHHcCCCCCCeee
Q 019990 143 EFAPSIPAKNITCLTRLDHNRAMGQISERLKVHVSDVKN 181 (332)
Q Consensus 143 ~~~~~~~~~~i~~~t~l~~~r~~~~~a~~~~v~~~~v~~ 181 (332)
.+.+....|+.+|.....+.+.++..+. +..|+.
T Consensus 152 ---~~~~~~~~Y~asKaal~~l~~~la~el~--~~gIrV 185 (260)
T PRK06603 152 ---KVIPNYNVMGVAKAALEASVKYLANDMG--ENNIRV 185 (260)
T ss_pred ---cCCCcccchhhHHHHHHHHHHHHHHHhh--hcCeEE
Confidence 1223334678888888888888888865 455664
|
|
| >PRK14982 acyl-ACP reductase; Provisional | Back alignment and domain information |
|---|
Probab=97.70 E-value=0.00012 Score=67.99 Aligned_cols=73 Identities=26% Similarity=0.356 Sum_probs=50.3
Q ss_pred CCcEEEEEcCCChhHHHHHHHHHhc-ccCCCCCCeEEEEEecccchhhhhhhHhhhhhhccCCccceEEeCCHHHHhCCC
Q 019990 4 NPLRVLVTGAAGQIGYALVPMIARG-IMLGPDQPVILHMLDIEPAAEALNGVKMELIDAAFPLLKGVVATTDVVEACKDV 82 (332)
Q Consensus 4 ~~~kI~VtGaaG~IGs~l~~~L~~~-~~~~~~~~~~i~l~D~~~~~~~~~~~~~dl~~~~~~~~~~v~~~~~~~~a~~~a 82 (332)
..++|+||||+|+||+.++..|... +. .++.+++++. +++.....++.. .++ .++.+++.++
T Consensus 154 ~~k~VLVtGAtG~IGs~lar~L~~~~gv------~~lilv~R~~--~rl~~La~el~~------~~i---~~l~~~l~~a 216 (340)
T PRK14982 154 SKATVAVVGATGDIGSAVCRWLDAKTGV------AELLLVARQQ--ERLQELQAELGG------GKI---LSLEEALPEA 216 (340)
T ss_pred CCCEEEEEccChHHHHHHHHHHHhhCCC------CEEEEEcCCH--HHHHHHHHHhcc------ccH---HhHHHHHccC
Confidence 4578999999999999999999753 42 2788998743 233322222211 112 2466789999
Q ss_pred cEEEEecCCCC
Q 019990 83 NIAVMVGGFPR 93 (332)
Q Consensus 83 DiVi~~ag~~~ 93 (332)
|+||++++.+.
T Consensus 217 DiVv~~ts~~~ 227 (340)
T PRK14982 217 DIVVWVASMPK 227 (340)
T ss_pred CEEEECCcCCc
Confidence 99999998764
|
|
| >PRK08159 enoyl-(acyl carrier protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=97.69 E-value=0.00065 Score=61.47 Aligned_cols=158 Identities=16% Similarity=0.149 Sum_probs=88.9
Q ss_pred CcEEEEEcCC--ChhHHHHHHHHHhcccCCCCCCeEEEEEecccc-hhhhhhhHhhhhhhccCCccceEEeCCHHHH---
Q 019990 5 PLRVLVTGAA--GQIGYALVPMIARGIMLGPDQPVILHMLDIEPA-AEALNGVKMELIDAAFPLLKGVVATTDVVEA--- 78 (332)
Q Consensus 5 ~~kI~VtGaa--G~IGs~l~~~L~~~~~~~~~~~~~i~l~D~~~~-~~~~~~~~~dl~~~~~~~~~~v~~~~~~~~a--- 78 (332)
.++++||||+ +-||.+++..|++.|. +|++.+++.. .+.++....++.. ......|+....+..+.
T Consensus 10 ~k~~lItGas~~~GIG~aia~~la~~G~-------~V~l~~r~~~~~~~~~~l~~~~~~-~~~~~~Dl~~~~~v~~~~~~ 81 (272)
T PRK08159 10 GKRGLILGVANNRSIAWGIAKACRAAGA-------ELAFTYQGDALKKRVEPLAAELGA-FVAGHCDVTDEASIDAVFET 81 (272)
T ss_pred CCEEEEECCCCCCcHHHHHHHHHHHCCC-------EEEEEcCchHHHHHHHHHHHhcCC-ceEEecCCCCHHHHHHHHHH
Confidence 4679999986 7899999999999885 7888765321 1112111111111 01122344433333322
Q ss_pred ----hCCCcEEEEecCCCCC-----C--CCChh---HHHhhhHHHHHHHHHHHHhhcCCCcEEEEEeCChhhHHHHHHHH
Q 019990 79 ----CKDVNIAVMVGGFPRK-----E--GMERK---DVMSKNVSIYKAQASALEKHAAPNCKVLVVANPANTNALILKEF 144 (332)
Q Consensus 79 ----~~~aDiVi~~ag~~~~-----~--~~~~~---~~~~~N~~~~~~i~~~i~~~~~~~~~viv~snp~~~~~~~~~~~ 144 (332)
+...|++|+.||.... + ..+.+ ..+..|+.....+.+.+...-..++.++++++....
T Consensus 82 ~~~~~g~iD~lv~nAG~~~~~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~~~~~~~~g~Iv~iss~~~~-------- 153 (272)
T PRK08159 82 LEKKWGKLDFVVHAIGFSDKDELTGRYVDTSRDNFTMTMDISVYSFTAVAQRAEKLMTDGGSILTLTYYGAE-------- 153 (272)
T ss_pred HHHhcCCCcEEEECCcccCccccccCcccCCHHHHHHHHhHHHHHHHHHHHHHHHhcCCCceEEEEeccccc--------
Confidence 2357999999987421 1 12222 245667766666666554432223566666642210
Q ss_pred CCCCCCCcEEEeecccHHHHHHHHHHHcCCCCCCeee
Q 019990 145 APSIPAKNITCLTRLDHNRAMGQISERLKVHVSDVKN 181 (332)
Q Consensus 145 ~~~~~~~~i~~~t~l~~~r~~~~~a~~~~v~~~~v~~ 181 (332)
.+.|....|+.+|.....+.+.++..+. +..||.
T Consensus 154 -~~~p~~~~Y~asKaal~~l~~~la~el~--~~gIrV 187 (272)
T PRK08159 154 -KVMPHYNVMGVAKAALEASVKYLAVDLG--PKNIRV 187 (272)
T ss_pred -cCCCcchhhhhHHHHHHHHHHHHHHHhc--ccCeEE
Confidence 1233334678888888888888888765 455664
|
|
| >PRK06129 3-hydroxyacyl-CoA dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=97.69 E-value=0.00085 Score=61.95 Aligned_cols=75 Identities=24% Similarity=0.281 Sum_probs=50.1
Q ss_pred CcEEEEEcCCChhHHHHHHHHHhcccCCCCCCeEEEEEecccchhhhhhhH----h---hhhhhcc-------CCccceE
Q 019990 5 PLRVLVTGAAGQIGYALVPMIARGIMLGPDQPVILHMLDIEPAAEALNGVK----M---ELIDAAF-------PLLKGVV 70 (332)
Q Consensus 5 ~~kI~VtGaaG~IGs~l~~~L~~~~~~~~~~~~~i~l~D~~~~~~~~~~~~----~---dl~~~~~-------~~~~~v~ 70 (332)
++||+|+| +|.+|++++..|+..|+ +|+++|++.. .+.... . .+..... ....++.
T Consensus 2 ~~~V~VIG-~G~mG~~iA~~la~~G~-------~V~v~d~~~~--~~~~~~~~~~~~l~~l~~~g~~~~~~~~~~~~~i~ 71 (308)
T PRK06129 2 MGSVAIIG-AGLIGRAWAIVFARAGH-------EVRLWDADPA--AAAAAPAYIAGRLEDLAAFDLLDGEAPDAVLARIR 71 (308)
T ss_pred CcEEEEEC-ccHHHHHHHHHHHHCCC-------eeEEEeCCHH--HHHHHHHHHHHHHHHHHHcCCCchhhHHHHhcCeE
Confidence 35899999 79999999999999886 8999998642 222110 0 0111000 0113456
Q ss_pred EeCCHHHHhCCCcEEEEec
Q 019990 71 ATTDVVEACKDVNIAVMVG 89 (332)
Q Consensus 71 ~~~~~~~a~~~aDiVi~~a 89 (332)
...++.+++++||+|+.+.
T Consensus 72 ~~~~~~~a~~~ad~Vi~av 90 (308)
T PRK06129 72 VTDSLADAVADADYVQESA 90 (308)
T ss_pred EECcHHHhhCCCCEEEECC
Confidence 6678878889999998864
|
|
| >COG1089 Gmd GDP-D-mannose dehydratase [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Probab=97.69 E-value=3.3e-05 Score=68.61 Aligned_cols=163 Identities=8% Similarity=0.002 Sum_probs=100.6
Q ss_pred CcEEEEEcCCChhHHHHHHHHHhcccCCCCCCeEEEEEecccchhhhhhh-Hhhhhhhc---cC-CccceEEeCCHHHHh
Q 019990 5 PLRVLVTGAAGQIGYALVPMIARGIMLGPDQPVILHMLDIEPAAEALNGV-KMELIDAA---FP-LLKGVVATTDVVEAC 79 (332)
Q Consensus 5 ~~kI~VtGaaG~IGs~l~~~L~~~~~~~~~~~~~i~l~D~~~~~~~~~~~-~~dl~~~~---~~-~~~~v~~~~~~~~a~ 79 (332)
++..+|||-+|+-|+.|+..|+++|+ +|+-+.++...-..... ...+.+.. +. ...++++...+..++
T Consensus 2 ~K~ALITGITGQDGsYLa~lLLekGY-------~VhGi~Rrss~~n~~ri~L~~~~~~~~~~l~l~~gDLtD~~~l~r~l 74 (345)
T COG1089 2 GKVALITGITGQDGSYLAELLLEKGY-------EVHGIKRRSSSFNTPRIHLYEDPHLNDPRLHLHYGDLTDSSNLLRIL 74 (345)
T ss_pred CceEEEecccCCchHHHHHHHHhcCc-------EEEEEeeccccCCcccceeccccccCCceeEEEeccccchHHHHHHH
Confidence 35678999999999999999999987 77777654321111110 00111111 11 135666666676666
Q ss_pred C--CCcEEEEecCCCC---CCCCChhHHHhhhHHHHHHHHHHHHhhcCCCcEEEEEeCChhhH---HHHHHHHCCCCCCC
Q 019990 80 K--DVNIAVMVGGFPR---KEGMERKDVMSKNVSIYKAQASALEKHAAPNCKVLVVANPANTN---ALILKEFAPSIPAK 151 (332)
Q Consensus 80 ~--~aDiVi~~ag~~~---~~~~~~~~~~~~N~~~~~~i~~~i~~~~~~~~~viv~snp~~~~---~~~~~~~~~~~~~~ 151 (332)
+ ..|-|.++|+... +...| ......+.-++..++++++..+.++.++..+|++ +.. -...+...+++-|+
T Consensus 75 ~~v~PdEIYNLaAQS~V~vSFe~P-~~T~~~~~iGtlrlLEaiR~~~~~~~rfYQAStS-E~fG~v~~~pq~E~TPFyPr 152 (345)
T COG1089 75 EEVQPDEIYNLAAQSHVGVSFEQP-EYTADVDAIGTLRLLEAIRILGEKKTRFYQASTS-ELYGLVQEIPQKETTPFYPR 152 (345)
T ss_pred HhcCchhheeccccccccccccCc-ceeeeechhHHHHHHHHHHHhCCcccEEEecccH-HhhcCcccCccccCCCCCCC
Confidence 5 5689999987532 22222 2234556777899999999998447787777653 211 11122323557777
Q ss_pred cEEEeecccHHHHHHHHHHHcCCCC
Q 019990 152 NITCLTRLDHNRAMGQISERLKVHV 176 (332)
Q Consensus 152 ~i~~~t~l~~~r~~~~~a~~~~v~~ 176 (332)
.+|+.+++-...+..-+.+.+|+..
T Consensus 153 SPYAvAKlYa~W~tvNYResYgl~A 177 (345)
T COG1089 153 SPYAVAKLYAYWITVNYRESYGLFA 177 (345)
T ss_pred CHHHHHHHHHHheeeehHhhcCcee
Confidence 7888888876666666666777644
|
|
| >PRK09260 3-hydroxybutyryl-CoA dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=97.68 E-value=0.00039 Score=63.55 Aligned_cols=74 Identities=19% Similarity=0.332 Sum_probs=49.7
Q ss_pred cEEEEEcCCChhHHHHHHHHHhcccCCCCCCeEEEEEecccchhhhhhhHh---hhhhhc-----c------CCccceEE
Q 019990 6 LRVLVTGAAGQIGYALVPMIARGIMLGPDQPVILHMLDIEPAAEALNGVKM---ELIDAA-----F------PLLKGVVA 71 (332)
Q Consensus 6 ~kI~VtGaaG~IGs~l~~~L~~~~~~~~~~~~~i~l~D~~~~~~~~~~~~~---dl~~~~-----~------~~~~~v~~ 71 (332)
+||+|+| +|.+|..++..|+..++ +|+++|++. +.++.... ++.... . ....+++.
T Consensus 2 ~~V~VIG-~G~mG~~iA~~la~~G~-------~V~~~d~~~--~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~ 71 (288)
T PRK09260 2 EKLVVVG-AGVMGRGIAYVFAVSGF-------QTTLVDIKQ--EQLESAQQEIASIFEQGVARGKLTEAARQAALARLSY 71 (288)
T ss_pred cEEEEEC-ccHHHHHHHHHHHhCCC-------cEEEEeCCH--HHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEE
Confidence 5899999 69999999999998876 899999864 22322111 110000 0 01124556
Q ss_pred eCCHHHHhCCCcEEEEec
Q 019990 72 TTDVVEACKDVNIAVMVG 89 (332)
Q Consensus 72 ~~~~~~a~~~aDiVi~~a 89 (332)
..++.+++++||+||.+.
T Consensus 72 ~~~~~~~~~~aD~Vi~av 89 (288)
T PRK09260 72 SLDLKAAVADADLVIEAV 89 (288)
T ss_pred eCcHHHhhcCCCEEEEec
Confidence 677778899999999874
|
|
| >PRK05599 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=97.67 E-value=0.0011 Score=59.04 Aligned_cols=154 Identities=14% Similarity=0.177 Sum_probs=86.4
Q ss_pred cEEEEEcCCChhHHHHHHHHHhcccCCCCCCeEEEEEecccchhhhhhhHhhhhhhc---c-CCccceEEeCCHHHH---
Q 019990 6 LRVLVTGAAGQIGYALVPMIARGIMLGPDQPVILHMLDIEPAAEALNGVKMELIDAA---F-PLLKGVVATTDVVEA--- 78 (332)
Q Consensus 6 ~kI~VtGaaG~IGs~l~~~L~~~~~~~~~~~~~i~l~D~~~~~~~~~~~~~dl~~~~---~-~~~~~v~~~~~~~~a--- 78 (332)
|.++||||++.||.+++..|.+ +. +|.+.+++. +.++....++.... . ....|+....++.++
T Consensus 1 ~~vlItGas~GIG~aia~~l~~-g~-------~Vil~~r~~--~~~~~~~~~l~~~~~~~~~~~~~Dv~d~~~v~~~~~~ 70 (246)
T PRK05599 1 MSILILGGTSDIAGEIATLLCH-GE-------DVVLAARRP--EAAQGLASDLRQRGATSVHVLSFDAQDLDTHRELVKQ 70 (246)
T ss_pred CeEEEEeCccHHHHHHHHHHhC-CC-------EEEEEeCCH--HHHHHHHHHHHhccCCceEEEEcccCCHHHHHHHHHH
Confidence 3589999999999999999984 53 788888753 34444444443211 0 112344433333222
Q ss_pred ----hCCCcEEEEecCCCCCC---CCChh---HHHhhhHHH----HHHHHHHHHhhcCCCcEEEEEeCChhhHHHHHHHH
Q 019990 79 ----CKDVNIAVMVGGFPRKE---GMERK---DVMSKNVSI----YKAQASALEKHAAPNCKVLVVANPANTNALILKEF 144 (332)
Q Consensus 79 ----~~~aDiVi~~ag~~~~~---~~~~~---~~~~~N~~~----~~~i~~~i~~~~~~~~~viv~snp~~~~~~~~~~~ 144 (332)
+...|++|+.||..... ..+.. +....|... .+.+.+.+.+.. .++.++++|+....
T Consensus 71 ~~~~~g~id~lv~nag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~m~~~~-~~g~Iv~isS~~~~-------- 141 (246)
T PRK05599 71 TQELAGEISLAVVAFGILGDQERAETDEAHAVEIATVDYTAQVSMLTVLADELRAQT-APAAIVAFSSIAGW-------- 141 (246)
T ss_pred HHHhcCCCCEEEEecCcCCCchhhhcCcHHHHHHHHHHHHhHHHHHHHHHHHHHhcC-CCCEEEEEeccccc--------
Confidence 23579999999874221 11111 223334322 234445554432 23567777763321
Q ss_pred CCCCCCCcEEEeecccHHHHHHHHHHHcCCCCCCeee
Q 019990 145 APSIPAKNITCLTRLDHNRAMGQISERLKVHVSDVKN 181 (332)
Q Consensus 145 ~~~~~~~~i~~~t~l~~~r~~~~~a~~~~v~~~~v~~ 181 (332)
.+.+....|+.+|.....+...++..++ ...|+.
T Consensus 142 -~~~~~~~~Y~asKaa~~~~~~~la~el~--~~~I~v 175 (246)
T PRK05599 142 -RARRANYVYGSTKAGLDAFCQGLADSLH--GSHVRL 175 (246)
T ss_pred -cCCcCCcchhhHHHHHHHHHHHHHHHhc--CCCceE
Confidence 1123333678888877788888888764 345663
|
|
| >PF03446 NAD_binding_2: NAD binding domain of 6-phosphogluconate dehydrogenase; InterPro: IPR006115 6-Phosphogluconate dehydrogenase (1 | Back alignment and domain information |
|---|
Probab=97.67 E-value=0.00048 Score=57.41 Aligned_cols=65 Identities=20% Similarity=0.359 Sum_probs=46.9
Q ss_pred CcEEEEEcCCChhHHHHHHHHHhcccCCCCCCeEEEEEecccchhhhhhhHhhhhhhccCCccceEEeCCHHHHhCCCcE
Q 019990 5 PLRVLVTGAAGQIGYALVPMIARGIMLGPDQPVILHMLDIEPAAEALNGVKMELIDAAFPLLKGVVATTDVVEACKDVNI 84 (332)
Q Consensus 5 ~~kI~VtGaaG~IGs~l~~~L~~~~~~~~~~~~~i~l~D~~~~~~~~~~~~~dl~~~~~~~~~~v~~~~~~~~a~~~aDi 84 (332)
|+||+++| .|.+|+.++.+|+..++ +|..+|++. ++.+ ++.+. ......+..++++++|+
T Consensus 1 m~~Ig~IG-lG~mG~~~a~~L~~~g~-------~v~~~d~~~--~~~~----~~~~~------g~~~~~s~~e~~~~~dv 60 (163)
T PF03446_consen 1 MMKIGFIG-LGNMGSAMARNLAKAGY-------EVTVYDRSP--EKAE----ALAEA------GAEVADSPAEAAEQADV 60 (163)
T ss_dssp -BEEEEE---SHHHHHHHHHHHHTTT-------EEEEEESSH--HHHH----HHHHT------TEEEESSHHHHHHHBSE
T ss_pred CCEEEEEc-hHHHHHHHHHHHHhcCC-------eEEeeccch--hhhh----hhHHh------hhhhhhhhhhHhhcccc
Confidence 57999999 89999999999999886 899999853 2222 23221 25556778888999999
Q ss_pred EEEec
Q 019990 85 AVMVG 89 (332)
Q Consensus 85 Vi~~a 89 (332)
|+.+-
T Consensus 61 vi~~v 65 (163)
T PF03446_consen 61 VILCV 65 (163)
T ss_dssp EEE-S
T ss_pred eEeec
Confidence 99863
|
1.1.44 from EC) (6PGD) is an oxidative carboxylase that catalyses the decarboxylating reduction of 6-phosphogluconate into ribulose 5-phosphate in the presence of NADP. This reaction is a component of the hexose mono-phosphate shunt and pentose phosphate pathways (PPP) [, ]. Prokaryotic and eukaryotic 6PGD are proteins of about 470 amino acids whose sequence are highly conserved []. The protein is a homodimer in which the monomers act independently []: each contains a large, mainly alpha-helical domain and a smaller beta-alpha-beta domain, containing a mixed parallel and anti-parallel 6-stranded beta sheet []. NADP is bound in a cleft in the small domain, the substrate binding in an adjacent pocket []. This family represents the NADP binding domain of 6-phosphogluconate dehydrogenase which adopts a Rossman fold. The C-terminal domain is described in IPR006114 from INTERPRO.; GO: 0004616 phosphogluconate dehydrogenase (decarboxylating) activity, 0006098 pentose-phosphate shunt, 0055114 oxidation-reduction process; PDB: 3AX6_D 3PDU_G 3Q3C_A 3OBB_A 4DLL_B 1PGP_A 1PGN_A 2PGD_A 1PGQ_A 1PGO_A .... |
| >PRK08303 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=97.65 E-value=0.00048 Score=63.48 Aligned_cols=160 Identities=12% Similarity=0.067 Sum_probs=87.0
Q ss_pred CcEEEEEcCCChhHHHHHHHHHhcccCCCCCCeEEEEEecccc--------hhhhhhhHhhhhhhc---cCCccceEEeC
Q 019990 5 PLRVLVTGAAGQIGYALVPMIARGIMLGPDQPVILHMLDIEPA--------AEALNGVKMELIDAA---FPLLKGVVATT 73 (332)
Q Consensus 5 ~~kI~VtGaaG~IGs~l~~~L~~~~~~~~~~~~~i~l~D~~~~--------~~~~~~~~~dl~~~~---~~~~~~v~~~~ 73 (332)
.+.++||||++.||.+++..|++.|. +|++.+++.. .+.+......+.... .....|+....
T Consensus 8 ~k~~lITGgs~GIG~aia~~la~~G~-------~Vv~~~r~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Dv~~~~ 80 (305)
T PRK08303 8 GKVALVAGATRGAGRGIAVELGAAGA-------TVYVTGRSTRARRSEYDRPETIEETAELVTAAGGRGIAVQVDHLVPE 80 (305)
T ss_pred CCEEEEeCCCchHHHHHHHHHHHCCC-------EEEEEecccccccccccccchHHHHHHHHHhcCCceEEEEcCCCCHH
Confidence 47899999999999999999998875 7888887521 112222222222111 11123444333
Q ss_pred CHHHH-------hCCCcEEEEec-CCCC-----CC--CCChh---HHHhhhHHHH----HHHHHHHHhhcCCCcEEEEEe
Q 019990 74 DVVEA-------CKDVNIAVMVG-GFPR-----KE--GMERK---DVMSKNVSIY----KAQASALEKHAAPNCKVLVVA 131 (332)
Q Consensus 74 ~~~~a-------~~~aDiVi~~a-g~~~-----~~--~~~~~---~~~~~N~~~~----~~i~~~i~~~~~~~~~viv~s 131 (332)
+..++ +...|++|+.| |... .+ ..+.. +.+..|+... +.++..+.+. ..+.||++|
T Consensus 81 ~v~~~~~~~~~~~g~iDilVnnA~g~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~lp~m~~~--~~g~IV~is 158 (305)
T PRK08303 81 QVRALVERIDREQGRLDILVNDIWGGEKLFEWGKPVWEHSLDKGLRMLRLAIDTHLITSHFALPLLIRR--PGGLVVEIT 158 (305)
T ss_pred HHHHHHHHHHHHcCCccEEEECCcccccccccCCchhhcCHHHHHHHHHHhhHHHHHHHHHHHHHhhhC--CCcEEEEEC
Confidence 33322 23579999998 7421 11 11212 2344555433 4444444432 235777777
Q ss_pred CChhhHHHHHHHHCCCCCCCcEEEeecccHHHHHHHHHHHcCCCCCCeee
Q 019990 132 NPANTNALILKEFAPSIPAKNITCLTRLDHNRAMGQISERLKVHVSDVKN 181 (332)
Q Consensus 132 np~~~~~~~~~~~~~~~~~~~i~~~t~l~~~r~~~~~a~~~~v~~~~v~~ 181 (332)
+...... . .+.+....|+.+|.....+.+.++..++ +..||.
T Consensus 159 S~~~~~~----~--~~~~~~~~Y~asKaal~~lt~~La~el~--~~gIrV 200 (305)
T PRK08303 159 DGTAEYN----A--THYRLSVFYDLAKTSVNRLAFSLAHELA--PHGATA 200 (305)
T ss_pred Ccccccc----C--cCCCCcchhHHHHHHHHHHHHHHHHHhh--hcCcEE
Confidence 5321100 0 1111223578888888888888888765 556774
|
|
| >TIGR01500 sepiapter_red sepiapterin reductase | Back alignment and domain information |
|---|
Probab=97.65 E-value=0.00034 Score=62.48 Aligned_cols=156 Identities=15% Similarity=0.140 Sum_probs=84.4
Q ss_pred EEEEEcCCChhHHHHHHHHHh----cccCCCCCCeEEEEEecccchhhhhhhHhhhhhh----cc-CCccceEEeCCHHH
Q 019990 7 RVLVTGAAGQIGYALVPMIAR----GIMLGPDQPVILHMLDIEPAAEALNGVKMELIDA----AF-PLLKGVVATTDVVE 77 (332)
Q Consensus 7 kI~VtGaaG~IGs~l~~~L~~----~~~~~~~~~~~i~l~D~~~~~~~~~~~~~dl~~~----~~-~~~~~v~~~~~~~~ 77 (332)
.++||||++.||.+++..|++ .+. .|.+.+++. +.+.....++... .. ....|+....++.+
T Consensus 2 ~vlItGas~GIG~~~a~~la~~~~~~g~-------~V~~~~r~~--~~~~~~~~~l~~~~~~~~v~~~~~Dl~~~~~v~~ 72 (256)
T TIGR01500 2 VCLVTGASRGFGRTIAQELAKCLKSPGS-------VLVLSARND--EALRQLKAEIGAERSGLRVVRVSLDLGAEAGLEQ 72 (256)
T ss_pred EEEEecCCCchHHHHHHHHHHhhccCCc-------EEEEEEcCH--HHHHHHHHHHHhcCCCceEEEEEeccCCHHHHHH
Confidence 478999999999999999986 453 788888753 3344333344321 01 11224433333322
Q ss_pred HhC-----------CCcEEEEecCCCCCC----C--CCh---hHHHhhhHHHHHHH----HHHHHhhcCCCcEEEEEeCC
Q 019990 78 ACK-----------DVNIAVMVGGFPRKE----G--MER---KDVMSKNVSIYKAQ----ASALEKHAAPNCKVLVVANP 133 (332)
Q Consensus 78 a~~-----------~aDiVi~~ag~~~~~----~--~~~---~~~~~~N~~~~~~i----~~~i~~~~~~~~~viv~snp 133 (332)
.++ +.|++|+.||..... . .+. ...+..|+.....+ ++.+++.....+.++++|+.
T Consensus 73 ~~~~~~~~~g~~~~~~~~lv~nAG~~~~~~~~~~~~~~~~~~~~~~~vN~~~~~~~~~~~~~~l~~~~~~~~~iv~isS~ 152 (256)
T TIGR01500 73 LLKALRELPRPKGLQRLLLINNAGTLGDVSKGFVDLSDSTQVQNYWALNLTSMLCLTSSVLKAFKDSPGLNRTVVNISSL 152 (256)
T ss_pred HHHHHHhccccCCCceEEEEeCCcccCccccccccCCCHHHHHHHHHhhhHHHHHHHHHHHHHHhhcCCCCCEEEEECCH
Confidence 221 125899999863211 1 111 23566676554444 44444321112466666653
Q ss_pred hhhHHHHHHHHCCCCCCCcEEEeecccHHHHHHHHHHHcCCCCCCeeee
Q 019990 134 ANTNALILKEFAPSIPAKNITCLTRLDHNRAMGQISERLKVHVSDVKNV 182 (332)
Q Consensus 134 ~~~~~~~~~~~~~~~~~~~i~~~t~l~~~r~~~~~a~~~~v~~~~v~~~ 182 (332)
... .+.+....|+.+|.....+.+.++..+. +..|+..
T Consensus 153 ~~~---------~~~~~~~~Y~asKaal~~l~~~la~e~~--~~~i~v~ 190 (256)
T TIGR01500 153 CAI---------QPFKGWALYCAGKAARDMLFQVLALEEK--NPNVRVL 190 (256)
T ss_pred HhC---------CCCCCchHHHHHHHHHHHHHHHHHHHhc--CCCeEEE
Confidence 211 1223223467778777788888887765 4557643
|
This model describes sepiapterin reductase, a member of the short chain dehydrogenase/reductase family. The enzyme catalyzes the last step in the biosynthesis of tetrahydrobiopterin. A similar enzyme in Bacillus cereus was isolated for its ability to convert benzil to (S)-benzoin, a property sepiapterin reductase also shares. Cutoff scores for this model are set such that benzil reductase scores between trusted and noise cutoffs. |
| >PLN02545 3-hydroxybutyryl-CoA dehydrogenase | Back alignment and domain information |
|---|
Probab=97.64 E-value=0.00084 Score=61.56 Aligned_cols=35 Identities=34% Similarity=0.490 Sum_probs=30.6
Q ss_pred CCcEEEEEcCCChhHHHHHHHHHhcccCCCCCCeEEEEEeccc
Q 019990 4 NPLRVLVTGAAGQIGYALVPMIARGIMLGPDQPVILHMLDIEP 46 (332)
Q Consensus 4 ~~~kI~VtGaaG~IGs~l~~~L~~~~~~~~~~~~~i~l~D~~~ 46 (332)
+.+||+|+| +|.+|+.++..|+..|+ +|+++|.+.
T Consensus 3 ~~~~V~vIG-~G~mG~~iA~~l~~~G~-------~V~~~d~~~ 37 (295)
T PLN02545 3 EIKKVGVVG-AGQMGSGIAQLAAAAGM-------DVWLLDSDP 37 (295)
T ss_pred CcCEEEEEC-CCHHHHHHHHHHHhcCC-------eEEEEeCCH
Confidence 456899999 69999999999998875 899999864
|
|
| >PRK15057 UDP-glucose 6-dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=97.63 E-value=0.0017 Score=61.91 Aligned_cols=115 Identities=17% Similarity=0.169 Sum_probs=63.9
Q ss_pred cEEEEEcCCChhHHHHHHHHHhcccCCCCCCeEEEEEecccchhhhhhhHhhhhhhccC--------CccceEEeCCHHH
Q 019990 6 LRVLVTGAAGQIGYALVPMIARGIMLGPDQPVILHMLDIEPAAEALNGVKMELIDAAFP--------LLKGVVATTDVVE 77 (332)
Q Consensus 6 ~kI~VtGaaG~IGs~l~~~L~~~~~~~~~~~~~i~l~D~~~~~~~~~~~~~dl~~~~~~--------~~~~v~~~~~~~~ 77 (332)
|||+|+| +|.+|..++..|.. |+ +|+.+|++. +++...........-+ ....++.+.+..+
T Consensus 1 mkI~VIG-lGyvGl~~A~~lA~-G~-------~VigvD~d~--~kv~~l~~g~~~~~e~~l~~~l~~~~~~l~~t~~~~~ 69 (388)
T PRK15057 1 MKITISG-TGYVGLSNGLLIAQ-NH-------EVVALDILP--SRVAMLNDRISPIVDKEIQQFLQSDKIHFNATLDKNE 69 (388)
T ss_pred CEEEEEC-CCHHHHHHHHHHHh-CC-------cEEEEECCH--HHHHHHHcCCCCCCCcCHHHHHHhCCCcEEEecchhh
Confidence 4799999 79999999976654 65 899999864 2332111100000000 1123555555667
Q ss_pred HhCCCcEEEEecCCCCCCCCChhHHHhhhHHHHHHHHHHHHhhcCCCcEEEEEeC-ChhhH
Q 019990 78 ACKDVNIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEKHAAPNCKVLVVAN-PANTN 137 (332)
Q Consensus 78 a~~~aDiVi~~ag~~~~~~~~~~~~~~~N~~~~~~i~~~i~~~~~~~~~viv~sn-p~~~~ 137 (332)
+.++||+||.+...+...... ..+...++++++.+.+. +++..+|+-|. |....
T Consensus 70 ~~~~ad~vii~Vpt~~~~k~~-----~~dl~~v~~v~~~i~~~-~~g~lVV~~STv~pgtt 124 (388)
T PRK15057 70 AYRDADYVIIATPTDYDPKTN-----YFNTSSVESVIKDVVEI-NPYAVMVIKSTVPVGFT 124 (388)
T ss_pred hhcCCCEEEEeCCCCCccCCC-----CcChHHHHHHHHHHHhc-CCCCEEEEeeecCCchH
Confidence 789999999987654221111 11234445555555553 34544454443 55443
|
|
| >PRK12859 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=97.63 E-value=0.00067 Score=60.65 Aligned_cols=158 Identities=11% Similarity=0.084 Sum_probs=83.9
Q ss_pred CCcEEEEEcCCC--hhHHHHHHHHHhcccCCCCCCeEEEEEeccc---------chhhhhhhHhhhhhhcc---CCccce
Q 019990 4 NPLRVLVTGAAG--QIGYALVPMIARGIMLGPDQPVILHMLDIEP---------AAEALNGVKMELIDAAF---PLLKGV 69 (332)
Q Consensus 4 ~~~kI~VtGaaG--~IGs~l~~~L~~~~~~~~~~~~~i~l~D~~~---------~~~~~~~~~~dl~~~~~---~~~~~v 69 (332)
+.++|+||||+| .||++++..|++.|. ++++.++.. ..+.......++..... ....|+
T Consensus 5 ~~k~vlVtGas~~~giG~~~a~~l~~~G~-------~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~D~ 77 (256)
T PRK12859 5 KNKVAVVTGVSRLDGIGAAICKELAEAGA-------DIFFTYWTAYDKEMPWGVDQDEQIQLQEELLKNGVKVSSMELDL 77 (256)
T ss_pred CCcEEEEECCCCCCChHHHHHHHHHHCCC-------eEEEEecccccccccccccHHHHHHHHHHHHhcCCeEEEEEcCC
Confidence 357899999984 799999999999875 677664311 00111111122221110 112233
Q ss_pred EEeCCHHHH-------hCCCcEEEEecCCCCCC---CCChh---HHHhhhHHHHHH----HHHHHHhhcCCCcEEEEEeC
Q 019990 70 VATTDVVEA-------CKDVNIAVMVGGFPRKE---GMERK---DVMSKNVSIYKA----QASALEKHAAPNCKVLVVAN 132 (332)
Q Consensus 70 ~~~~~~~~a-------~~~aDiVi~~ag~~~~~---~~~~~---~~~~~N~~~~~~----i~~~i~~~~~~~~~viv~sn 132 (332)
+...++.++ +-..|++|+.||..... ..+.+ ..++.|...... ++..+++. ..+++|++|+
T Consensus 78 ~~~~~i~~~~~~~~~~~g~id~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~--~~g~iv~isS 155 (256)
T PRK12859 78 TQNDAPKELLNKVTEQLGYPHILVNNAAYSTNNDFSNLTAEELDKHYMVNVRATTLLSSQFARGFDKK--SGGRIINMTS 155 (256)
T ss_pred CCHHHHHHHHHHHHHHcCCCcEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHhhc--CCeEEEEEcc
Confidence 333333222 23469999999864221 12222 235566654433 34444432 2457777775
Q ss_pred ChhhHHHHHHHHCCCCCCCcEEEeecccHHHHHHHHHHHcCCCCCCeee
Q 019990 133 PANTNALILKEFAPSIPAKNITCLTRLDHNRAMGQISERLKVHVSDVKN 181 (332)
Q Consensus 133 p~~~~~~~~~~~~~~~~~~~i~~~t~l~~~r~~~~~a~~~~v~~~~v~~ 181 (332)
.... .+++....|+.++.....+.+.+++.++ +..|+.
T Consensus 156 ~~~~---------~~~~~~~~Y~~sK~a~~~l~~~la~~~~--~~~i~v 193 (256)
T PRK12859 156 GQFQ---------GPMVGELAYAATKGAIDALTSSLAAEVA--HLGITV 193 (256)
T ss_pred cccC---------CCCCCchHHHHHHHHHHHHHHHHHHHhh--hhCeEE
Confidence 3221 1233334567777777788777877754 344553
|
|
| >PRK11730 fadB multifunctional fatty acid oxidation complex subunit alpha; Reviewed | Back alignment and domain information |
|---|
Probab=97.60 E-value=0.00076 Score=69.27 Aligned_cols=104 Identities=20% Similarity=0.223 Sum_probs=69.4
Q ss_pred CcEEEEEcCCChhHHHHHHHHHhcccCCCCCCeEEEEEecccchhhhhh---hHhh-hhhh----cc------CCccceE
Q 019990 5 PLRVLVTGAAGQIGYALVPMIARGIMLGPDQPVILHMLDIEPAAEALNG---VKME-LIDA----AF------PLLKGVV 70 (332)
Q Consensus 5 ~~kI~VtGaaG~IGs~l~~~L~~~~~~~~~~~~~i~l~D~~~~~~~~~~---~~~d-l~~~----~~------~~~~~v~ 70 (332)
.+||+|+| +|.+|..++..++..|+ +|+|+|.+. +.+.. .... +... .. .....++
T Consensus 313 i~~v~ViG-aG~mG~gIA~~~a~~G~-------~V~l~d~~~--~~l~~~~~~~~~~l~~~~~~g~~~~~~~~~~~~~i~ 382 (715)
T PRK11730 313 VKQAAVLG-AGIMGGGIAYQSASKGV-------PVIMKDINQ--KALDLGMTEAAKLLNKQVERGKIDGAKMAGVLSSIR 382 (715)
T ss_pred cceEEEEC-CchhHHHHHHHHHhCCC-------eEEEEeCCH--HHHHHHHHHHHHHHHHHHHcCCCChhhHHHHHhCeE
Confidence 36899999 69999999999999886 899999864 22221 1111 1110 00 0124677
Q ss_pred EeCCHHHHhCCCcEEEEecCCCCCCCCChhHHHhhhHHHHHHHHHHHHhhcCCCcEEEEEeCChh
Q 019990 71 ATTDVVEACKDVNIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEKHAAPNCKVLVVANPAN 135 (332)
Q Consensus 71 ~~~~~~~a~~~aDiVi~~ag~~~~~~~~~~~~~~~N~~~~~~i~~~i~~~~~~~~~viv~snp~~ 135 (332)
.++++ +++++||+||-+. -.+.+.-+++...+.++++|++ |++||.+.
T Consensus 383 ~~~~~-~~~~~aDlViEav--------------~E~l~~K~~vf~~l~~~~~~~~--ilasNTSs 430 (715)
T PRK11730 383 PTLDY-AGFERVDVVVEAV--------------VENPKVKAAVLAEVEQKVREDT--ILASNTST 430 (715)
T ss_pred EeCCH-HHhcCCCEEEecc--------------cCcHHHHHHHHHHHHhhCCCCc--EEEEcCCC
Confidence 67776 6789999998653 1135556788888989886664 56777544
|
|
| >PRK11154 fadJ multifunctional fatty acid oxidation complex subunit alpha; Reviewed | Back alignment and domain information |
|---|
Probab=97.59 E-value=0.00075 Score=69.29 Aligned_cols=104 Identities=19% Similarity=0.348 Sum_probs=69.7
Q ss_pred CcEEEEEcCCChhHHHHHHHHH-hcccCCCCCCeEEEEEecccchhhhhh---hHhhhhh-h----cc------CCccce
Q 019990 5 PLRVLVTGAAGQIGYALVPMIA-RGIMLGPDQPVILHMLDIEPAAEALNG---VKMELID-A----AF------PLLKGV 69 (332)
Q Consensus 5 ~~kI~VtGaaG~IGs~l~~~L~-~~~~~~~~~~~~i~l~D~~~~~~~~~~---~~~dl~~-~----~~------~~~~~v 69 (332)
-+||+|+| +|.+|+.++..++ ..|+ +|+++|.+. +.+.. ...+..+ . .. ....++
T Consensus 309 i~~v~ViG-aG~mG~giA~~~a~~~G~-------~V~l~d~~~--~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i 378 (708)
T PRK11154 309 VNKVGVLG-GGLMGGGIAYVTATKAGL-------PVRIKDINP--QGINHALKYSWDLLDKKVKRRHLKPSERDKQMALI 378 (708)
T ss_pred ccEEEEEC-CchhhHHHHHHHHHHcCC-------eEEEEeCCH--HHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhcE
Confidence 46899999 6999999999988 6676 899999864 22221 1111111 0 00 012467
Q ss_pred EEeCCHHHHhCCCcEEEEecCCCCCCCCChhHHHhhhHHHHHHHHHHHHhhcCCCcEEEEEeCChh
Q 019990 70 VATTDVVEACKDVNIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEKHAAPNCKVLVVANPAN 135 (332)
Q Consensus 70 ~~~~~~~~a~~~aDiVi~~ag~~~~~~~~~~~~~~~N~~~~~~i~~~i~~~~~~~~~viv~snp~~ 135 (332)
+.++++ +++++||+||-+. -.|.+.-+++...+.++++|++ |++||...
T Consensus 379 ~~~~~~-~~~~~aDlViEav--------------~E~~~~K~~v~~~le~~~~~~~--ilasnTS~ 427 (708)
T PRK11154 379 SGTTDY-RGFKHADVVIEAV--------------FEDLALKQQMVAEVEQNCAPHT--IFASNTSS 427 (708)
T ss_pred EEeCCh-HHhccCCEEeecc--------------cccHHHHHHHHHHHHhhCCCCc--EEEECCCC
Confidence 777776 6789999999753 1235666788899999987765 55677544
|
|
| >TIGR02440 FadJ fatty oxidation complex, alpha subunit FadJ | Back alignment and domain information |
|---|
Probab=97.59 E-value=0.00087 Score=68.69 Aligned_cols=104 Identities=19% Similarity=0.318 Sum_probs=68.1
Q ss_pred CcEEEEEcCCChhHHHHHHHHH-hcccCCCCCCeEEEEEecccchhhhhhh---Hh-hhhhhc----c------CCccce
Q 019990 5 PLRVLVTGAAGQIGYALVPMIA-RGIMLGPDQPVILHMLDIEPAAEALNGV---KM-ELIDAA----F------PLLKGV 69 (332)
Q Consensus 5 ~~kI~VtGaaG~IGs~l~~~L~-~~~~~~~~~~~~i~l~D~~~~~~~~~~~---~~-dl~~~~----~------~~~~~v 69 (332)
.+||+|+| +|.+|+.++..++ ..|+ +|+++|.+. +.+..- .. .+.... . .....+
T Consensus 304 i~~v~ViG-aG~mG~~iA~~~a~~~G~-------~V~l~d~~~--~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i 373 (699)
T TIGR02440 304 IKKVGILG-GGLMGGGIASVTATKAGI-------PVRIKDINP--QGINNALKYAWKLLDKGVKRRHMTPAERDNQMALI 373 (699)
T ss_pred ccEEEEEC-CcHHHHHHHHHHHHHcCC-------eEEEEeCCH--HHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHcCe
Confidence 46899999 6999999999887 4676 899999864 222211 11 111110 0 012456
Q ss_pred EEeCCHHHHhCCCcEEEEecCCCCCCCCChhHHHhhhHHHHHHHHHHHHhhcCCCcEEEEEeCChh
Q 019990 70 VATTDVVEACKDVNIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEKHAAPNCKVLVVANPAN 135 (332)
Q Consensus 70 ~~~~~~~~a~~~aDiVi~~ag~~~~~~~~~~~~~~~N~~~~~~i~~~i~~~~~~~~~viv~snp~~ 135 (332)
+.++++ +++++||+||-+. -.+.+.-+++...+.+++++++ |++||.+.
T Consensus 374 ~~~~~~-~~~~~adlViEav--------------~E~l~~K~~v~~~l~~~~~~~~--ilasnTS~ 422 (699)
T TIGR02440 374 TGTTDY-RGFKDVDIVIEAV--------------FEDLALKHQMVKDIEQECAAHT--IFASNTSS 422 (699)
T ss_pred EEeCCh-HHhccCCEEEEec--------------cccHHHHHHHHHHHHhhCCCCc--EEEeCCCC
Confidence 767776 6789999999753 1124556788888999886664 56777543
|
Members represent alpha subunit of multifunctional enzyme complex of the fatty acid degradation cycle. Plays a minor role in aerobic beta-oxidation of fatty acids. FadJI complex is necessary for anaerobic growth on short-chain acids with nitrate as an electron acceptor. Activities include: enoyl-CoA hydratase (EC 4.2.1.17),3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35), 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3). A representative is E. coli FadJ (aka YfcX). This model excludes the FadB of TIGR02437 equivalog. |
| >PRK06249 2-dehydropantoate 2-reductase; Provisional | Back alignment and domain information |
|---|
Probab=97.58 E-value=0.0011 Score=61.45 Aligned_cols=38 Identities=29% Similarity=0.336 Sum_probs=33.2
Q ss_pred CCCCCcEEEEEcCCChhHHHHHHHHHhcccCCCCCCeEEEEEeccc
Q 019990 1 MAKNPLRVLVTGAAGQIGYALVPMIARGIMLGPDQPVILHMLDIEP 46 (332)
Q Consensus 1 m~~~~~kI~VtGaaG~IGs~l~~~L~~~~~~~~~~~~~i~l~D~~~ 46 (332)
|++++|||+|+| +|.||+.++..|.+.++ ++.+++++.
T Consensus 1 ~~~~~m~I~IiG-~GaiG~~lA~~L~~~g~-------~V~~~~r~~ 38 (313)
T PRK06249 1 MDSETPRIGIIG-TGAIGGFYGAMLARAGF-------DVHFLLRSD 38 (313)
T ss_pred CCCcCcEEEEEC-CCHHHHHHHHHHHHCCC-------eEEEEEeCC
Confidence 788889999999 79999999999988775 788888753
|
|
| >PRK12921 2-dehydropantoate 2-reductase; Provisional | Back alignment and domain information |
|---|
Probab=97.58 E-value=0.00088 Score=61.54 Aligned_cols=103 Identities=15% Similarity=0.129 Sum_probs=58.3
Q ss_pred cEEEEEcCCChhHHHHHHHHHhcccCCCCCCeEEEEEecccchhhhhhhHhhhhhhccC-Ccc----ceEEeCCHHHHhC
Q 019990 6 LRVLVTGAAGQIGYALVPMIARGIMLGPDQPVILHMLDIEPAAEALNGVKMELIDAAFP-LLK----GVVATTDVVEACK 80 (332)
Q Consensus 6 ~kI~VtGaaG~IGs~l~~~L~~~~~~~~~~~~~i~l~D~~~~~~~~~~~~~dl~~~~~~-~~~----~v~~~~~~~~a~~ 80 (332)
|||+|+| +|.+|+.++..|.+.+. +|.++++ . +..+... + ...... ... ......+..+..+
T Consensus 1 mkI~IiG-~G~iG~~~a~~L~~~g~-------~V~~~~r-~--~~~~~~~-~-~g~~~~~~~~~~~~~~~~~~~~~~~~~ 67 (305)
T PRK12921 1 MRIAVVG-AGAVGGTFGGRLLEAGR-------DVTFLVR-P--KRAKALR-E-RGLVIRSDHGDAVVPGPVITDPEELTG 67 (305)
T ss_pred CeEEEEC-CCHHHHHHHHHHHHCCC-------ceEEEec-H--HHHHHHH-h-CCeEEEeCCCeEEecceeecCHHHccC
Confidence 4799999 69999999999998775 7899987 3 1222111 1 000000 000 1112334444458
Q ss_pred CCcEEEEecCCCCCCCCChhHHHhhhHHHHHHHHHHHHhhcCCCcEEEEEeCChhhH
Q 019990 81 DVNIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEKHAAPNCKVLVVANPANTN 137 (332)
Q Consensus 81 ~aDiVi~~ag~~~~~~~~~~~~~~~N~~~~~~i~~~i~~~~~~~~~viv~snp~~~~ 137 (332)
++|+||++.-.. . +..+++.++.+-.++..++...|.++..
T Consensus 68 ~~d~vilavk~~-----~-----------~~~~~~~l~~~~~~~~~ii~~~nG~~~~ 108 (305)
T PRK12921 68 PFDLVILAVKAY-----Q-----------LDAAIPDLKPLVGEDTVIIPLQNGIGQL 108 (305)
T ss_pred CCCEEEEEeccc-----C-----------HHHHHHHHHhhcCCCCEEEEeeCCCChH
Confidence 899999874211 0 2233444444333455667778887543
|
|
| >PRK06997 enoyl-(acyl carrier protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=97.58 E-value=0.0015 Score=58.57 Aligned_cols=158 Identities=15% Similarity=0.192 Sum_probs=86.5
Q ss_pred CcEEEEEcC--CChhHHHHHHHHHhcccCCCCCCeEEEEEeccc-chhhhhhhHhhhhhhccCCccceEEeCCHHHH---
Q 019990 5 PLRVLVTGA--AGQIGYALVPMIARGIMLGPDQPVILHMLDIEP-AAEALNGVKMELIDAAFPLLKGVVATTDVVEA--- 78 (332)
Q Consensus 5 ~~kI~VtGa--aG~IGs~l~~~L~~~~~~~~~~~~~i~l~D~~~-~~~~~~~~~~dl~~~~~~~~~~v~~~~~~~~a--- 78 (332)
.++++|||| ++-||.+++..|++.|. +|++.++.. ..+.+.....++.. ......|+....++.++
T Consensus 6 ~k~vlItGas~~~GIG~a~a~~l~~~G~-------~v~~~~~~~~~~~~~~~~~~~~~~-~~~~~~Dv~d~~~v~~~~~~ 77 (260)
T PRK06997 6 GKRILITGLLSNRSIAYGIAKACKREGA-------ELAFTYVGDRFKDRITEFAAEFGS-DLVFPCDVASDEQIDALFAS 77 (260)
T ss_pred CcEEEEeCCCCCCcHHHHHHHHHHHCCC-------eEEEEccchHHHHHHHHHHHhcCC-cceeeccCCCHHHHHHHHHH
Confidence 467999996 56899999999999885 777776431 11222211111111 01122345443333322
Q ss_pred ----hCCCcEEEEecCCCCC-----C---CCChhH---HHhhhHHHHHHHHHHHHhhcCCCcEEEEEeCChhhHHHHHHH
Q 019990 79 ----CKDVNIAVMVGGFPRK-----E---GMERKD---VMSKNVSIYKAQASALEKHAAPNCKVLVVANPANTNALILKE 143 (332)
Q Consensus 79 ----~~~aDiVi~~ag~~~~-----~---~~~~~~---~~~~N~~~~~~i~~~i~~~~~~~~~viv~snp~~~~~~~~~~ 143 (332)
+...|++|+.||.... + ..+.++ .++.|....-.+.+.+..+-..++.++++++-...
T Consensus 78 ~~~~~g~iD~lvnnAG~~~~~~~~~~~~~~~~~~~~~~~~~iN~~~~~~l~~~~lp~m~~~g~Ii~iss~~~~------- 150 (260)
T PRK06997 78 LGQHWDGLDGLVHSIGFAPREAIAGDFLDGLSRENFRIAHDISAYSFPALAKAALPMLSDDASLLTLSYLGAE------- 150 (260)
T ss_pred HHHHhCCCcEEEEccccCCccccccccchhcCHHHHHHHHHhhhHHHHHHHHHHHHhcCCCceEEEEeccccc-------
Confidence 3458999999987421 1 122222 34567655544444444332223566666642211
Q ss_pred HCCCCCCCcEEEeecccHHHHHHHHHHHcCCCCCCeee
Q 019990 144 FAPSIPAKNITCLTRLDHNRAMGQISERLKVHVSDVKN 181 (332)
Q Consensus 144 ~~~~~~~~~i~~~t~l~~~r~~~~~a~~~~v~~~~v~~ 181 (332)
.+.+....|+.+|-.-..+.+.++..+. +..||.
T Consensus 151 --~~~~~~~~Y~asKaal~~l~~~la~el~--~~gIrV 184 (260)
T PRK06997 151 --RVVPNYNTMGLAKASLEASVRYLAVSLG--PKGIRA 184 (260)
T ss_pred --cCCCCcchHHHHHHHHHHHHHHHHHHhc--ccCeEE
Confidence 1223233577888888888888888764 445663
|
|
| >COG3967 DltE Short-chain dehydrogenase involved in D-alanine esterification of lipoteichoic acid and wall teichoic acid (D-alanine transfer protein) [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Probab=97.57 E-value=0.0017 Score=55.34 Aligned_cols=121 Identities=20% Similarity=0.241 Sum_probs=74.0
Q ss_pred CCCCCcEEEEEcCCChhHHHHHHHHHhcccCCCCCCeEEEEEecccchhhhhhhHhhhhhhccCCccceEEeCC---HHH
Q 019990 1 MAKNPLRVLVTGAAGQIGYALVPMIARGIMLGPDQPVILHMLDIEPAAEALNGVKMELIDAAFPLLKGVVATTD---VVE 77 (332)
Q Consensus 1 m~~~~~kI~VtGaaG~IGs~l~~~L~~~~~~~~~~~~~i~l~D~~~~~~~~~~~~~dl~~~~~~~~~~v~~~~~---~~~ 77 (332)
|+.....|+||||+..||..|++.+.+.|- +|.+..++. +++........... ....|+.+... +.+
T Consensus 1 mk~tgnTiLITGG~sGIGl~lak~f~elgN-------~VIi~gR~e--~~L~e~~~~~p~~~-t~v~Dv~d~~~~~~lve 70 (245)
T COG3967 1 MKTTGNTILITGGASGIGLALAKRFLELGN-------TVIICGRNE--ERLAEAKAENPEIH-TEVCDVADRDSRRELVE 70 (245)
T ss_pred CcccCcEEEEeCCcchhhHHHHHHHHHhCC-------EEEEecCcH--HHHHHHHhcCcchh-eeeecccchhhHHHHHH
Confidence 777788999999999999999999998764 788888753 45544333322221 11234443332 222
Q ss_pred Hh----CCCcEEEEecCCCCCCCCC-----h---hHHHhhhH----HHHHHHHHHHHhhcCCCcEEEEEeCC
Q 019990 78 AC----KDVNIAVMVGGFPRKEGME-----R---KDVMSKNV----SIYKAQASALEKHAAPNCKVLVVANP 133 (332)
Q Consensus 78 a~----~~aDiVi~~ag~~~~~~~~-----~---~~~~~~N~----~~~~~i~~~i~~~~~~~~~viv~snp 133 (332)
.+ -+-+++|..||+.+..+.+ . .+.+..|. ..+..+++.+.+. |.+-+|.+|+-
T Consensus 71 wLkk~~P~lNvliNNAGIqr~~dlt~~e~~~~~~~~eI~~Nl~API~Lt~~~lphl~~q--~~a~IInVSSG 140 (245)
T COG3967 71 WLKKEYPNLNVLINNAGIQRNEDLTGAEDLLDDAEQEIATNLLAPIRLTALLLPHLLRQ--PEATIINVSSG 140 (245)
T ss_pred HHHhhCCchheeeecccccchhhccCCcchhhHHHHHHHHhhhhHHHHHHHHHHHHHhC--CCceEEEeccc
Confidence 22 3579999999986542211 1 12233443 3445555666653 57788888864
|
|
| >TIGR02437 FadB fatty oxidation complex, alpha subunit FadB | Back alignment and domain information |
|---|
Probab=97.57 E-value=0.00091 Score=68.63 Aligned_cols=105 Identities=21% Similarity=0.281 Sum_probs=69.7
Q ss_pred CCcEEEEEcCCChhHHHHHHHHHhcccCCCCCCeEEEEEecccchhhhhh---hHhhhh-hhc----c------CCccce
Q 019990 4 NPLRVLVTGAAGQIGYALVPMIARGIMLGPDQPVILHMLDIEPAAEALNG---VKMELI-DAA----F------PLLKGV 69 (332)
Q Consensus 4 ~~~kI~VtGaaG~IGs~l~~~L~~~~~~~~~~~~~i~l~D~~~~~~~~~~---~~~dl~-~~~----~------~~~~~v 69 (332)
+.+||+|+| +|.+|+.++..++..|+ +|+++|.+. +.+.. ...... ... . .....+
T Consensus 312 ~i~~v~ViG-aG~mG~gIA~~~a~~G~-------~V~l~d~~~--~~l~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i 381 (714)
T TIGR02437 312 DVKQAAVLG-AGIMGGGIAYQSASKGT-------PIVMKDINQ--HSLDLGLTEAAKLLNKQVERGRITPAKMAGVLNGI 381 (714)
T ss_pred ccceEEEEC-CchHHHHHHHHHHhCCC-------eEEEEeCCH--HHHHHHHHHHHHHHHHHHHcCCCChhhHHHHHhCe
Confidence 346899999 69999999999999886 899999864 22221 111111 000 0 012456
Q ss_pred EEeCCHHHHhCCCcEEEEecCCCCCCCCChhHHHhhhHHHHHHHHHHHHhhcCCCcEEEEEeCChh
Q 019990 70 VATTDVVEACKDVNIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEKHAAPNCKVLVVANPAN 135 (332)
Q Consensus 70 ~~~~~~~~a~~~aDiVi~~ag~~~~~~~~~~~~~~~N~~~~~~i~~~i~~~~~~~~~viv~snp~~ 135 (332)
+.+.++ +++++||+||-+. -.+.+.-+++...+.+.++|++ |++||.+.
T Consensus 382 ~~~~~~-~~~~~aDlViEav--------------~E~l~~K~~vf~~l~~~~~~~~--ilasnTS~ 430 (714)
T TIGR02437 382 TPTLSY-AGFDNVDIVVEAV--------------VENPKVKAAVLAEVEQHVREDA--ILASNTST 430 (714)
T ss_pred EEeCCH-HHhcCCCEEEEcC--------------cccHHHHHHHHHHHHhhCCCCc--EEEECCCC
Confidence 666676 6789999999653 1135556788888889886665 56777544
|
Members represent alpha subunit of multifunctional enzyme complex of the fatty acid degradation cycle. Activities include: enoyl-CoA hydratase (EC 4.2.1.17), dodecenoyl-CoA delta-isomerase activity (EC 5.3.3.8), 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35), 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3). A representative is E. coli FadB. This model excludes the FadJ family represented by SP:P77399. |
| >PRK06035 3-hydroxyacyl-CoA dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=97.56 E-value=0.0018 Score=59.19 Aligned_cols=74 Identities=19% Similarity=0.223 Sum_probs=47.6
Q ss_pred CcEEEEEcCCChhHHHHHHHHHhcccCCCCCCeEEEEEecccchhhhhhhHhh-------hhhhc--cC--------Ccc
Q 019990 5 PLRVLVTGAAGQIGYALVPMIARGIMLGPDQPVILHMLDIEPAAEALNGVKME-------LIDAA--FP--------LLK 67 (332)
Q Consensus 5 ~~kI~VtGaaG~IGs~l~~~L~~~~~~~~~~~~~i~l~D~~~~~~~~~~~~~d-------l~~~~--~~--------~~~ 67 (332)
.+||+|+| +|.+|+.++..|+..|+ +|+++|.+. +.++..... +.... .. ...
T Consensus 3 i~~I~ViG-aG~mG~~iA~~la~~G~-------~V~l~d~~~--~~l~~~~~~i~~~~~~l~~~~~~g~~~~~~~~~~~~ 72 (291)
T PRK06035 3 IKVIGVVG-SGVMGQGIAQVFARTGY-------DVTIVDVSE--EILKNAMELIESGPYGLRNLVEKGKMSEDEAKAIMA 72 (291)
T ss_pred CcEEEEEC-ccHHHHHHHHHHHhcCC-------eEEEEeCCH--HHHHHHHHHHHhhhhhHHHHHHcCCCCHHHHHHHHh
Confidence 36899999 69999999999998886 899999864 222211111 11000 00 012
Q ss_pred ceEEeCCHHHHhCCCcEEEEec
Q 019990 68 GVVATTDVVEACKDVNIAVMVG 89 (332)
Q Consensus 68 ~v~~~~~~~~a~~~aDiVi~~a 89 (332)
.+...++. +++++||+||.+.
T Consensus 73 ~i~~~~~~-~~~~~aDlVieav 93 (291)
T PRK06035 73 RIRTSTSY-ESLSDADFIVEAV 93 (291)
T ss_pred CcEeeCCH-HHhCCCCEEEEcC
Confidence 34445555 6789999999874
|
|
| >PRK08268 3-hydroxy-acyl-CoA dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=97.53 E-value=0.0015 Score=64.52 Aligned_cols=75 Identities=17% Similarity=0.165 Sum_probs=49.3
Q ss_pred CCcEEEEEcCCChhHHHHHHHHHhcccCCCCCCeEEEEEecccchhhhhhh---Hhh-hhhhc--c--------CCccce
Q 019990 4 NPLRVLVTGAAGQIGYALVPMIARGIMLGPDQPVILHMLDIEPAAEALNGV---KME-LIDAA--F--------PLLKGV 69 (332)
Q Consensus 4 ~~~kI~VtGaaG~IGs~l~~~L~~~~~~~~~~~~~i~l~D~~~~~~~~~~~---~~d-l~~~~--~--------~~~~~v 69 (332)
+.+||+|+| +|.+|+.++..|+..|+ +|+++|++. +.+... ..+ +.... . .....+
T Consensus 6 ~i~~V~VIG-aG~MG~gIA~~la~aG~-------~V~l~D~~~--e~l~~~~~~i~~~l~~~~~~G~~~~~~~~~~~~~i 75 (507)
T PRK08268 6 SIATVAVIG-AGAMGAGIAQVAAQAGH-------TVLLYDARA--GAAAAARDGIAARLAKLVEKGKLTAEQADAALARL 75 (507)
T ss_pred CCCEEEEEC-CCHHHHHHHHHHHhCCC-------eEEEEeCCH--HHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCe
Confidence 457899999 69999999999998886 899999864 233221 111 11000 0 011346
Q ss_pred EEeCCHHHHhCCCcEEEEec
Q 019990 70 VATTDVVEACKDVNIAVMVG 89 (332)
Q Consensus 70 ~~~~~~~~a~~~aDiVi~~a 89 (332)
+...++ +++++||+||-+.
T Consensus 76 ~~~~~~-~~~~~aDlViEav 94 (507)
T PRK08268 76 RPVEAL-ADLADCDLVVEAI 94 (507)
T ss_pred EEeCCH-HHhCCCCEEEEcC
Confidence 666666 4588999999763
|
|
| >PRK07531 bifunctional 3-hydroxyacyl-CoA dehydrogenase/thioesterase; Validated | Back alignment and domain information |
|---|
Probab=97.52 E-value=0.0015 Score=64.26 Aligned_cols=75 Identities=17% Similarity=0.143 Sum_probs=49.9
Q ss_pred CcEEEEEcCCChhHHHHHHHHHhcccCCCCCCeEEEEEecccchhhhhhhHhhh-------h---hhccCCccceEEeCC
Q 019990 5 PLRVLVTGAAGQIGYALVPMIARGIMLGPDQPVILHMLDIEPAAEALNGVKMEL-------I---DAAFPLLKGVVATTD 74 (332)
Q Consensus 5 ~~kI~VtGaaG~IGs~l~~~L~~~~~~~~~~~~~i~l~D~~~~~~~~~~~~~dl-------~---~~~~~~~~~v~~~~~ 74 (332)
.+||+|+| +|.+|+.++..|+..|+ +|+++|.+.. .+......+ . ........++....+
T Consensus 4 i~kIavIG-~G~MG~~iA~~la~~G~-------~V~v~D~~~~--~~~~~~~~~~~~~~~~~~l~~~~~~~~g~i~~~~~ 73 (495)
T PRK07531 4 IMKAACIG-GGVIGGGWAARFLLAGI-------DVAVFDPHPE--AERIIGEVLANAERAYAMLTDAPLPPEGRLTFCAS 73 (495)
T ss_pred cCEEEEEC-cCHHHHHHHHHHHhCCC-------eEEEEeCCHH--HHHHHHHHHHHHHHHHhhhccchhhhhhceEeeCC
Confidence 35899999 79999999999999886 8999998642 222111000 0 000001123556677
Q ss_pred HHHHhCCCcEEEEec
Q 019990 75 VVEACKDVNIAVMVG 89 (332)
Q Consensus 75 ~~~a~~~aDiVi~~a 89 (332)
+.+++++||+|+.+.
T Consensus 74 ~~ea~~~aD~Vieav 88 (495)
T PRK07531 74 LAEAVAGADWIQESV 88 (495)
T ss_pred HHHHhcCCCEEEEcC
Confidence 878899999999763
|
|
| >smart00822 PKS_KR This enzymatic domain is part of bacterial polyketide synthases and catalyses the first step in the reductive modification of the beta-carbonyl centres in the growing polyketide chain | Back alignment and domain information |
|---|
Probab=97.49 E-value=0.0012 Score=54.54 Aligned_cols=119 Identities=13% Similarity=0.072 Sum_probs=65.2
Q ss_pred cEEEEEcCCChhHHHHHHHHHhcccCCCCCCeEEEEEecccchh-hhhhhHhhhhhhcc---CCccceEEeCCHHHHh--
Q 019990 6 LRVLVTGAAGQIGYALVPMIARGIMLGPDQPVILHMLDIEPAAE-ALNGVKMELIDAAF---PLLKGVVATTDVVEAC-- 79 (332)
Q Consensus 6 ~kI~VtGaaG~IGs~l~~~L~~~~~~~~~~~~~i~l~D~~~~~~-~~~~~~~dl~~~~~---~~~~~v~~~~~~~~a~-- 79 (332)
++++|+||+|+||.+++..|.+.+. ..+.+.+++.... .......++..... ....|+....++.+.+
T Consensus 1 ~~~li~Ga~~~iG~~~~~~l~~~g~------~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~ 74 (180)
T smart00822 1 GTYLITGGLGGLGLELARWLAERGA------RHLVLLSRSGPDAPGAAELLAELEALGAEVTVVACDVADRAALAAALAA 74 (180)
T ss_pred CEEEEEcCCChHHHHHHHHHHHhhC------CeEEEEeCCCCCCccHHHHHHHHHhcCCeEEEEECCCCCHHHHHHHHHH
Confidence 3689999999999999999988764 1466666542111 00010112211110 0112333222222222
Q ss_pred -----CCCcEEEEecCCCCCC---CCCh---hHHHhhhHHHHHHHHHHHHhhcCCCcEEEEEeC
Q 019990 80 -----KDVNIAVMVGGFPRKE---GMER---KDVMSKNVSIYKAQASALEKHAAPNCKVLVVAN 132 (332)
Q Consensus 80 -----~~aDiVi~~ag~~~~~---~~~~---~~~~~~N~~~~~~i~~~i~~~~~~~~~viv~sn 132 (332)
...|.|||.+|..... ..+. ...+..|+.....+.+.+.... + .+++++|+
T Consensus 75 ~~~~~~~id~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~-~-~~ii~~ss 136 (180)
T smart00822 75 IPARLGPLRGVIHAAGVLDDGLLANLTPERFAAVLAPKVDGAWNLHELTRDLP-L-DFFVLFSS 136 (180)
T ss_pred HHHHcCCeeEEEEccccCCccccccCCHHHHHHhhchHhHHHHHHHHHhccCC-c-ceEEEEcc
Confidence 2369999999863211 1111 2356778888888888886643 3 35566664
|
It uses NADPH to reduce the keto group to a hydroxy group. |
| >TIGR02441 fa_ox_alpha_mit fatty acid oxidation complex, alpha subunit, mitochondrial | Back alignment and domain information |
|---|
Probab=97.48 E-value=0.001 Score=68.46 Aligned_cols=104 Identities=16% Similarity=0.280 Sum_probs=69.1
Q ss_pred CcEEEEEcCCChhHHHHHHHHHhcccCCCCCCeEEEEEecccchhhhhh---hHhhh-hhhc----c------CCccceE
Q 019990 5 PLRVLVTGAAGQIGYALVPMIARGIMLGPDQPVILHMLDIEPAAEALNG---VKMEL-IDAA----F------PLLKGVV 70 (332)
Q Consensus 5 ~~kI~VtGaaG~IGs~l~~~L~~~~~~~~~~~~~i~l~D~~~~~~~~~~---~~~dl-~~~~----~------~~~~~v~ 70 (332)
.+||+|+| +|.+|+.++..++..|+ +|+++|.+. +.+.. ...+. .... . .....++
T Consensus 335 i~~v~ViG-aG~MG~gIA~~~a~~G~-------~V~l~d~~~--~~l~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~ 404 (737)
T TIGR02441 335 VKTLAVLG-AGLMGAGIAQVSVDKGL-------KTVLKDATP--AGLDRGQQQVFKGLNKKVKRKKITSLERDSILSNLT 404 (737)
T ss_pred ccEEEEEC-CCHhHHHHHHHHHhCCC-------cEEEecCCH--HHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeE
Confidence 46899999 69999999999998886 899999864 22221 11111 1100 0 0124677
Q ss_pred EeCCHHHHhCCCcEEEEecCCCCCCCCChhHHHhhhHHHHHHHHHHHHhhcCCCcEEEEEeCChh
Q 019990 71 ATTDVVEACKDVNIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEKHAAPNCKVLVVANPAN 135 (332)
Q Consensus 71 ~~~~~~~a~~~aDiVi~~ag~~~~~~~~~~~~~~~N~~~~~~i~~~i~~~~~~~~~viv~snp~~ 135 (332)
.++++ +++++||+||-.. -.|.+.-+++...+.++++|++ |++||.+.
T Consensus 405 ~~~~~-~~~~~aDlViEAv--------------~E~l~~K~~vf~~l~~~~~~~~--ilasNTSs 452 (737)
T TIGR02441 405 PTLDY-SGFKNADMVIEAV--------------FEDLSLKHKVIKEVEAVVPPHC--IIASNTSA 452 (737)
T ss_pred EeCCH-HHhccCCeehhhc--------------cccHHHHHHHHHHHHhhCCCCc--EEEEcCCC
Confidence 66776 5789999998542 1235556788888999886665 55677543
|
Members represent alpha subunit of mitochondrial multifunctional fatty acid degradation enzyme complex. Subunit activities include: enoyl-CoA hydratase (EC 4.2.1.17) & 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35). Some characterization in human, pig, and rat. The beta subunit has activity: acetyl-CoA C-acyltransferase (EC 2.3.1.16). |
| >KOG1201 consensus Hydroxysteroid 17-beta dehydrogenase 11 [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=97.46 E-value=0.0026 Score=57.30 Aligned_cols=160 Identities=17% Similarity=0.182 Sum_probs=93.5
Q ss_pred CcEEEEEcCCChhHHHHHHHHHhcccCCCCCCeEEEEEecccchhhhhhhHhhhhhh--ccCCccceEEeCCH-------
Q 019990 5 PLRVLVTGAAGQIGYALVPMIARGIMLGPDQPVILHMLDIEPAAEALNGVKMELIDA--AFPLLKGVVATTDV------- 75 (332)
Q Consensus 5 ~~kI~VtGaaG~IGs~l~~~L~~~~~~~~~~~~~i~l~D~~~~~~~~~~~~~dl~~~--~~~~~~~v~~~~~~------- 75 (332)
...|+||||++-+|..++..+++.+- .+++.|++.. -....+..+.+. ...+..|++..+++
T Consensus 38 g~~vLITGgg~GlGr~ialefa~rg~-------~~vl~Din~~--~~~etv~~~~~~g~~~~y~cdis~~eei~~~a~~V 108 (300)
T KOG1201|consen 38 GEIVLITGGGSGLGRLIALEFAKRGA-------KLVLWDINKQ--GNEETVKEIRKIGEAKAYTCDISDREEIYRLAKKV 108 (300)
T ss_pred CCEEEEeCCCchHHHHHHHHHHHhCC-------eEEEEecccc--chHHHHHHHHhcCceeEEEecCCCHHHHHHHHHHH
Confidence 45799999999999999999998874 7999999752 222233333332 11122344433333
Q ss_pred HHHhCCCcEEEEecCCCC-CC--CCChhH---HHhhhH----HHHHHHHHHHHhhcCCCcEEEEEeCChhhHHHHHHHHC
Q 019990 76 VEACKDVNIAVMVGGFPR-KE--GMERKD---VMSKNV----SIYKAQASALEKHAAPNCKVLVVANPANTNALILKEFA 145 (332)
Q Consensus 76 ~~a~~~aDiVi~~ag~~~-~~--~~~~~~---~~~~N~----~~~~~i~~~i~~~~~~~~~viv~snp~~~~~~~~~~~~ 145 (332)
++...+.|++|.-||+.. ++ ..++++ .++.|+ ..+++.+..+.+.. ++.+|.+++-...
T Consensus 109 k~e~G~V~ILVNNAGI~~~~~ll~~~d~ei~k~~~vN~~~~f~t~kaFLP~M~~~~--~GHIV~IaS~aG~--------- 177 (300)
T KOG1201|consen 109 KKEVGDVDILVNNAGIVTGKKLLDCSDEEIQKTFDVNTIAHFWTTKAFLPKMLENN--NGHIVTIASVAGL--------- 177 (300)
T ss_pred HHhcCCceEEEeccccccCCCccCCCHHHHHHHHHHhhHHHHHHHHHHhHHHHhcC--CceEEEehhhhcc---------
Confidence 334557899999999732 22 233322 344554 44578888888763 5666655543221
Q ss_pred CCCCCCcEEEeecccHHHHHHHHHHHcC-CCCCCeeeeEE
Q 019990 146 PSIPAKNITCLTRLDHNRAMGQISERLK-VHVSDVKNVII 184 (332)
Q Consensus 146 ~~~~~~~i~~~t~l~~~r~~~~~a~~~~-v~~~~v~~~~V 184 (332)
.+.+.--.|+.||-...-+...+...+. .++..|+...|
T Consensus 178 ~g~~gl~~YcaSK~a~vGfhesL~~EL~~~~~~~IktTlv 217 (300)
T KOG1201|consen 178 FGPAGLADYCASKFAAVGFHESLSMELRALGKDGIKTTLV 217 (300)
T ss_pred cCCccchhhhhhHHHHHHHHHHHHHHHHhcCCCCeeEEEE
Confidence 1122112456677766666666665544 35555765543
|
|
| >PRK00094 gpsA NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=97.45 E-value=0.0028 Score=58.73 Aligned_cols=75 Identities=25% Similarity=0.345 Sum_probs=48.5
Q ss_pred CcEEEEEcCCChhHHHHHHHHHhcccCCCCCCeEEEEEecccchhhhhhhHhhhhhhc----cCCccceEEeCCHHHHhC
Q 019990 5 PLRVLVTGAAGQIGYALVPMIARGIMLGPDQPVILHMLDIEPAAEALNGVKMELIDAA----FPLLKGVVATTDVVEACK 80 (332)
Q Consensus 5 ~~kI~VtGaaG~IGs~l~~~L~~~~~~~~~~~~~i~l~D~~~~~~~~~~~~~dl~~~~----~~~~~~v~~~~~~~~a~~ 80 (332)
||||+|+| +|.+|+.++..|...++ ++.++|++. +.++....+..+.. ......+....+..++++
T Consensus 1 mmkI~iiG-~G~mG~~~a~~L~~~g~-------~V~~~~r~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 70 (325)
T PRK00094 1 MMKIAVLG-AGSWGTALAIVLARNGH-------DVTLWARDP--EQAAEINADRENPRYLPGIKLPDNLRATTDLAEALA 70 (325)
T ss_pred CCEEEEEC-CCHHHHHHHHHHHhCCC-------EEEEEECCH--HHHHHHHHcCcccccCCCCcCCCCeEEeCCHHHHHh
Confidence 46899999 69999999999998775 799999853 22222111100000 001113444566767788
Q ss_pred CCcEEEEec
Q 019990 81 DVNIAVMVG 89 (332)
Q Consensus 81 ~aDiVi~~a 89 (332)
++|+||++.
T Consensus 71 ~~D~vi~~v 79 (325)
T PRK00094 71 DADLILVAV 79 (325)
T ss_pred CCCEEEEeC
Confidence 999999874
|
|
| >PRK15182 Vi polysaccharide biosynthesis protein TviB; Provisional | Back alignment and domain information |
|---|
Probab=97.45 E-value=0.0039 Score=60.16 Aligned_cols=76 Identities=16% Similarity=0.263 Sum_probs=51.7
Q ss_pred CCCcEEEEEcCCChhHHHHHHHHHhcccCCCCCCeEEEEEecccchhhhhhhHhhhhhhccCC----------ccceEEe
Q 019990 3 KNPLRVLVTGAAGQIGYALVPMIARGIMLGPDQPVILHMLDIEPAAEALNGVKMELIDAAFPL----------LKGVVAT 72 (332)
Q Consensus 3 ~~~~kI~VtGaaG~IGs~l~~~L~~~~~~~~~~~~~i~l~D~~~~~~~~~~~~~dl~~~~~~~----------~~~v~~~ 72 (332)
..+|||+|+| .|++|..++..|.. ++ +|+.+|++. ++. ..+.....+. ...+..+
T Consensus 4 ~~~mkI~vIG-lGyvGlpmA~~la~-~~-------~V~g~D~~~--~~v----e~l~~G~~~~~e~~~~~l~~~g~l~~t 68 (425)
T PRK15182 4 IDEVKIAIIG-LGYVGLPLAVEFGK-SR-------QVVGFDVNK--KRI----LELKNGVDVNLETTEEELREARYLKFT 68 (425)
T ss_pred CCCCeEEEEC-cCcchHHHHHHHhc-CC-------EEEEEeCCH--HHH----HHHHCcCCCCCCCCHHHHHhhCCeeEE
Confidence 4679999999 89999999999776 44 899999864 222 2333211110 1234444
Q ss_pred CCHHHHhCCCcEEEEecCCCCC
Q 019990 73 TDVVEACKDVNIAVMVGGFPRK 94 (332)
Q Consensus 73 ~~~~~a~~~aDiVi~~ag~~~~ 94 (332)
++. +++++||++|++.+.|..
T Consensus 69 ~~~-~~~~~advvii~Vptp~~ 89 (425)
T PRK15182 69 SEI-EKIKECNFYIITVPTPIN 89 (425)
T ss_pred eCH-HHHcCCCEEEEEcCCCCC
Confidence 444 568999999999887753
|
|
| >PRK11064 wecC UDP-N-acetyl-D-mannosamine dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=97.44 E-value=0.0037 Score=60.19 Aligned_cols=107 Identities=17% Similarity=0.145 Sum_probs=63.5
Q ss_pred CcEEEEEcCCChhHHHHHHHHHhcccCCCCCCeEEEEEecccchhhhhhhHhhhhhhccCC--------------ccceE
Q 019990 5 PLRVLVTGAAGQIGYALVPMIARGIMLGPDQPVILHMLDIEPAAEALNGVKMELIDAAFPL--------------LKGVV 70 (332)
Q Consensus 5 ~~kI~VtGaaG~IGs~l~~~L~~~~~~~~~~~~~i~l~D~~~~~~~~~~~~~dl~~~~~~~--------------~~~v~ 70 (332)
++||+|+| .|.+|..++..|++.|+ +|..+|+++ +++.. +.....+. .+.+.
T Consensus 3 ~~kI~VIG-lG~~G~~~A~~La~~G~-------~V~~~D~~~--~~v~~----l~~g~~~~~e~~l~~~l~~~~~~g~l~ 68 (415)
T PRK11064 3 FETISVIG-LGYIGLPTAAAFASRQK-------QVIGVDINQ--HAVDT----INRGEIHIVEPDLDMVVKTAVEGGYLR 68 (415)
T ss_pred ccEEEEEC-cchhhHHHHHHHHhCCC-------EEEEEeCCH--HHHHH----HHCCCCCcCCCCHHHHHHHHhhcCcee
Confidence 57999999 79999999999999886 899999864 23322 11111100 11222
Q ss_pred EeCCHHHHhCCCcEEEEecCCCCCCCCChhHHHhhhHHHHHHHHHHHHhhcCCCcEEEEEeC-Chh
Q 019990 71 ATTDVVEACKDVNIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEKHAAPNCKVLVVAN-PAN 135 (332)
Q Consensus 71 ~~~~~~~a~~~aDiVi~~ag~~~~~~~~~~~~~~~N~~~~~~i~~~i~~~~~~~~~viv~sn-p~~ 135 (332)
..++ .++||+||++...|..... ..++..+...++.+.++.+++..+|+.|. |..
T Consensus 69 ~~~~----~~~aDvvii~vptp~~~~~------~~dl~~v~~~~~~i~~~l~~g~iVI~~STv~pg 124 (415)
T PRK11064 69 ATTT----PEPADAFLIAVPTPFKGDH------EPDLTYVEAAAKSIAPVLKKGDLVILESTSPVG 124 (415)
T ss_pred eecc----cccCCEEEEEcCCCCCCCC------CcChHHHHHHHHHHHHhCCCCCEEEEeCCCCCC
Confidence 2222 3589999999877643211 11244455555666665434545555443 443
|
|
| >PRK06720 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=97.44 E-value=0.0014 Score=54.97 Aligned_cols=81 Identities=16% Similarity=0.137 Sum_probs=49.5
Q ss_pred CCcEEEEEcCCChhHHHHHHHHHhcccCCCCCCeEEEEEecccchhhhhhhHhhhhhhc--c-CCccceEEeCCHHH---
Q 019990 4 NPLRVLVTGAAGQIGYALVPMIARGIMLGPDQPVILHMLDIEPAAEALNGVKMELIDAA--F-PLLKGVVATTDVVE--- 77 (332)
Q Consensus 4 ~~~kI~VtGaaG~IGs~l~~~L~~~~~~~~~~~~~i~l~D~~~~~~~~~~~~~dl~~~~--~-~~~~~v~~~~~~~~--- 77 (332)
+.+.++||||+|.||..++..|.+.|. ++.+.|++. +.+.....++.... . .+..|+....+..+
T Consensus 15 ~gk~~lVTGa~~GIG~aia~~l~~~G~-------~V~l~~r~~--~~~~~~~~~l~~~~~~~~~~~~Dl~~~~~v~~~v~ 85 (169)
T PRK06720 15 AGKVAIVTGGGIGIGRNTALLLAKQGA-------KVIVTDIDQ--ESGQATVEEITNLGGEALFVSYDMEKQGDWQRVIS 85 (169)
T ss_pred CCCEEEEecCCChHHHHHHHHHHHCCC-------EEEEEECCH--HHHHHHHHHHHhcCCcEEEEEccCCCHHHHHHHHH
Confidence 457899999999999999999998875 899999753 22222222332111 0 11123332222222
Q ss_pred ----HhCCCcEEEEecCCCC
Q 019990 78 ----ACKDVNIAVMVGGFPR 93 (332)
Q Consensus 78 ----a~~~aDiVi~~ag~~~ 93 (332)
.+...|++|+.||...
T Consensus 86 ~~~~~~G~iDilVnnAG~~~ 105 (169)
T PRK06720 86 ITLNAFSRIDMLFQNAGLYK 105 (169)
T ss_pred HHHHHcCCCCEEEECCCcCC
Confidence 2346899999998743
|
|
| >KOG4169 consensus 15-hydroxyprostaglandin dehydrogenase and related dehydrogenases [Lipid transport and metabolism; General function prediction only] | Back alignment and domain information |
|---|
Probab=97.43 E-value=0.00046 Score=59.61 Aligned_cols=161 Identities=16% Similarity=0.144 Sum_probs=91.7
Q ss_pred CCCCCcEEEEEcCCChhHHHHHHHHHhcccCCCCCCeEEEEEecccchhhhhhhHhhhhhhcc-----CCccceEEeCCH
Q 019990 1 MAKNPLRVLVTGAAGQIGYALVPMIARGIMLGPDQPVILHMLDIEPAAEALNGVKMELIDAAF-----PLLKGVVATTDV 75 (332)
Q Consensus 1 m~~~~~kI~VtGaaG~IGs~l~~~L~~~~~~~~~~~~~i~l~D~~~~~~~~~~~~~dl~~~~~-----~~~~~v~~~~~~ 75 (332)
|..+.+.+++||++|-||..++..|++.+.. .+.+.|+. |+.+ ....|+.... ....|+....++
T Consensus 1 m~~tGKna~vtggagGIGl~~sk~Ll~kgik------~~~i~~~~---En~~-a~akL~ai~p~~~v~F~~~DVt~~~~~ 70 (261)
T KOG4169|consen 1 MDLTGKNALVTGGAGGIGLATSKALLEKGIK------VLVIDDSE---ENPE-AIAKLQAINPSVSVIFIKCDVTNRGDL 70 (261)
T ss_pred CcccCceEEEecCCchhhHHHHHHHHHcCch------heeehhhh---hCHH-HHHHHhccCCCceEEEEEeccccHHHH
Confidence 5566788999999999999999999999872 33444432 2332 2233443321 112466655566
Q ss_pred HHHhC-------CCcEEEEecCCCCCCCCChhHHHhhhHHHH----HHHHHHHHhh-cCCCcEEEEEeCChhhHHHHHHH
Q 019990 76 VEACK-------DVNIAVMVGGFPRKEGMERKDVMSKNVSIY----KAQASALEKH-AAPNCKVLVVANPANTNALILKE 143 (332)
Q Consensus 76 ~~a~~-------~aDiVi~~ag~~~~~~~~~~~~~~~N~~~~----~~i~~~i~~~-~~~~~~viv~snp~~~~~~~~~~ 143 (332)
+++++ ..|++|.-||+.....- +..+..|+.++ ...++.+.+- +.+.+.+|+.|+-.... +
T Consensus 71 ~~~f~ki~~~fg~iDIlINgAGi~~dkd~--e~Ti~vNLtgvin~T~~alpyMdk~~gG~GGiIvNmsSv~GL~-P---- 143 (261)
T KOG4169|consen 71 EAAFDKILATFGTIDILINGAGILDDKDW--ERTINVNLTGVINGTQLALPYMDKKQGGKGGIIVNMSSVAGLD-P---- 143 (261)
T ss_pred HHHHHHHHHHhCceEEEEcccccccchhH--HHhhccchhhhhhhhhhhhhhhhhhcCCCCcEEEEeccccccC-c----
Confidence 66544 57999999998653222 22345555443 4445555443 23567888888533211 0
Q ss_pred HCCCCCCCcEEEeecccHHHHHHHHHHHcCCCCCCeeee
Q 019990 144 FAPSIPAKNITCLTRLDHNRAMGQISERLKVHVSDVKNV 182 (332)
Q Consensus 144 ~~~~~~~~~i~~~t~l~~~r~~~~~a~~~~v~~~~v~~~ 182 (332)
.|...+|+.++..-.-|-+.+|.......+.|+..
T Consensus 144 ----~p~~pVY~AsKaGVvgFTRSla~~ayy~~sGV~~~ 178 (261)
T KOG4169|consen 144 ----MPVFPVYAASKAGVVGFTRSLADLAYYQRSGVRFN 178 (261)
T ss_pred ----cccchhhhhcccceeeeehhhhhhhhHhhcCEEEE
Confidence 11112344444444444445666666666778754
|
|
| >PRK08229 2-dehydropantoate 2-reductase; Provisional | Back alignment and domain information |
|---|
Probab=97.42 E-value=0.0023 Score=59.86 Aligned_cols=76 Identities=20% Similarity=0.189 Sum_probs=45.4
Q ss_pred CcEEEEEcCCChhHHHHHHHHHhcccCCCCCCeEEEEEecccchhhhhhhHhhhhhhc----cCCccceEEeCCHHHHhC
Q 019990 5 PLRVLVTGAAGQIGYALVPMIARGIMLGPDQPVILHMLDIEPAAEALNGVKMELIDAA----FPLLKGVVATTDVVEACK 80 (332)
Q Consensus 5 ~~kI~VtGaaG~IGs~l~~~L~~~~~~~~~~~~~i~l~D~~~~~~~~~~~~~dl~~~~----~~~~~~v~~~~~~~~a~~ 80 (332)
||||+|+| +|.+|+.++..|.+.|+ +|.++|++...+.+........+.. .....++....+. ++++
T Consensus 2 ~mkI~IiG-~G~mG~~~A~~L~~~G~-------~V~~~~r~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~-~~~~ 72 (341)
T PRK08229 2 MARICVLG-AGSIGCYLGGRLAAAGA-------DVTLIGRARIGDELRAHGLTLTDYRGRDVRVPPSAIAFSTDP-AALA 72 (341)
T ss_pred CceEEEEC-CCHHHHHHHHHHHhcCC-------cEEEEecHHHHHHHHhcCceeecCCCcceecccceeEeccCh-hhcc
Confidence 46899999 79999999999998875 7999997421111110000000000 0001123334444 5678
Q ss_pred CCcEEEEec
Q 019990 81 DVNIAVMVG 89 (332)
Q Consensus 81 ~aDiVi~~a 89 (332)
++|+||++.
T Consensus 73 ~~D~vil~v 81 (341)
T PRK08229 73 TADLVLVTV 81 (341)
T ss_pred CCCEEEEEe
Confidence 999999975
|
|
| >TIGR02279 PaaC-3OHAcCoADH 3-hydroxyacyl-CoA dehydrogenase PaaC | Back alignment and domain information |
|---|
Probab=97.41 E-value=0.0023 Score=63.04 Aligned_cols=104 Identities=26% Similarity=0.342 Sum_probs=63.5
Q ss_pred CCcEEEEEcCCChhHHHHHHHHHhcccCCCCCCeEEEEEecccchhhhhhhHh----hhhhhc----c------CCccce
Q 019990 4 NPLRVLVTGAAGQIGYALVPMIARGIMLGPDQPVILHMLDIEPAAEALNGVKM----ELIDAA----F------PLLKGV 69 (332)
Q Consensus 4 ~~~kI~VtGaaG~IGs~l~~~L~~~~~~~~~~~~~i~l~D~~~~~~~~~~~~~----dl~~~~----~------~~~~~v 69 (332)
+-+||+|+| +|.+|+.++..|+..|+ +|+++|++. +.+..... .+.... . .....+
T Consensus 4 ~~~kV~VIG-aG~MG~gIA~~la~aG~-------~V~l~d~~~--e~l~~~~~~i~~~l~~~~~~G~~~~~~~~~~~~~i 73 (503)
T TIGR02279 4 NVVTVAVIG-AGAMGAGIAQVAASAGH-------QVLLYDIRA--EALARAIAGIEARLNSLVTKGKLTAEECERTLKRL 73 (503)
T ss_pred CccEEEEEC-cCHHHHHHHHHHHhCCC-------eEEEEeCCH--HHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHhcc
Confidence 456899999 69999999999999886 899999864 23321111 111110 0 012346
Q ss_pred EEeCCHHHHhCCCcEEEEecCCCCCCCCChhHHHhhhHHHHHHHHHHHHhhcCCCcEEEEEeCCh
Q 019990 70 VATTDVVEACKDVNIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEKHAAPNCKVLVVANPA 134 (332)
Q Consensus 70 ~~~~~~~~a~~~aDiVi~~ag~~~~~~~~~~~~~~~N~~~~~~i~~~i~~~~~~~~~viv~snp~ 134 (332)
+..+++ +++++||+||.+.- + +...-+.+...+.+++++++ |++||.+
T Consensus 74 ~~~~~~-~~l~~aDlVIEav~-------E-------~~~vK~~vf~~l~~~~~~~~--IlasnTS 121 (503)
T TIGR02279 74 IPVTDL-HALADAGLVIEAIV-------E-------NLEVKKALFAQLEELCPADT--IIASNTS 121 (503)
T ss_pred EEeCCH-HHhCCCCEEEEcCc-------C-------cHHHHHHHHHHHHhhCCCCe--EEEECCC
Confidence 666676 56889999998631 0 12223344455777774554 4566544
|
This 3-hydroxyacyl-CoA dehydrogenase is involved in the degradation of phenylacetic acid, presumably in steps following the opening of the phenyl ring. The sequences included in this model are all found in aparrent operons with other related genes such as paaA, paaB, paaD, paaE, paaF and paaN. Some genomes contain these other genes without an apparent paaC in the same operon - possibly in these cases a different dehydrogenase involved in fatty acid degradation may fill in the needed activity. This enzyme has domains which are members of the pfam02737 and pfam00725 families. |
| >PF03807 F420_oxidored: NADP oxidoreductase coenzyme F420-dependent; InterPro: IPR004455 The function of F420-dependent NADP reductase is the transfer of electrons from reduced coenzyme F420 into an electron transport chain | Back alignment and domain information |
|---|
Probab=97.41 E-value=0.002 Score=48.40 Aligned_cols=67 Identities=24% Similarity=0.337 Sum_probs=44.0
Q ss_pred EEEEEcCCChhHHHHHHHHHhcccCCCCCCeEEEEE-ecccchhhhhhhHhhhhhhccCCccceEEeC-CHHHHhCCCcE
Q 019990 7 RVLVTGAAGQIGYALVPMIARGIMLGPDQPVILHML-DIEPAAEALNGVKMELIDAAFPLLKGVVATT-DVVEACKDVNI 84 (332)
Q Consensus 7 kI~VtGaaG~IGs~l~~~L~~~~~~~~~~~~~i~l~-D~~~~~~~~~~~~~dl~~~~~~~~~~v~~~~-~~~~a~~~aDi 84 (332)
||+|+| +|.+|++++..|++.+. . +.++.++ ++++ +++.....++. +.... +..++++++|+
T Consensus 1 kI~iIG-~G~mg~al~~~l~~~g~-~---~~~v~~~~~r~~--~~~~~~~~~~~---------~~~~~~~~~~~~~~adv 64 (96)
T PF03807_consen 1 KIGIIG-AGNMGSALARGLLASGI-K---PHEVIIVSSRSP--EKAAELAKEYG---------VQATADDNEEAAQEADV 64 (96)
T ss_dssp EEEEES-TSHHHHHHHHHHHHTTS-----GGEEEEEEESSH--HHHHHHHHHCT---------TEEESEEHHHHHHHTSE
T ss_pred CEEEEC-CCHHHHHHHHHHHHCCC-C---ceeEEeeccCcH--HHHHHHHHhhc---------cccccCChHHhhccCCE
Confidence 799999 79999999999998874 1 2378855 7753 23332222111 12222 56788899999
Q ss_pred EEEec
Q 019990 85 AVMVG 89 (332)
Q Consensus 85 Vi~~a 89 (332)
||++.
T Consensus 65 vilav 69 (96)
T PF03807_consen 65 VILAV 69 (96)
T ss_dssp EEE-S
T ss_pred EEEEE
Confidence 99974
|
It catalyses the reduction of F420 with NADP(+) and the reduction of NADP(+) with F420H(2).; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2IZZ_B 2GR9_B 2GRA_B 2GER_C 2AMF_E 2AHR_C 2VQ3_B 2VNS_B 2RCY_D 2YJZ_D .... |
| >PF01118 Semialdhyde_dh: Semialdehyde dehydrogenase, NAD binding domain; InterPro: IPR000534 The semialdehyde dehydrogenase family is found in N-acetyl-glutamine semialdehyde dehydrogenase (AgrC), which is involved in arginine biosynthesis, and aspartate-semialdehyde dehydrogenase [], an enzyme involved in the biosynthesis of various amino acids from aspartate | Back alignment and domain information |
|---|
Probab=97.39 E-value=0.00048 Score=54.42 Aligned_cols=74 Identities=16% Similarity=0.241 Sum_probs=41.2
Q ss_pred EEEEEcCCChhHHHHHHHHHhcccCCCCCCeEEEEEecccchhhhhhhHhhhhhhccCCccceEEeCCHHHHhCCCcEEE
Q 019990 7 RVLVTGAAGQIGYALVPMIARGIMLGPDQPVILHMLDIEPAAEALNGVKMELIDAAFPLLKGVVATTDVVEACKDVNIAV 86 (332)
Q Consensus 7 kI~VtGaaG~IGs~l~~~L~~~~~~~~~~~~~i~l~D~~~~~~~~~~~~~dl~~~~~~~~~~v~~~~~~~~a~~~aDiVi 86 (332)
||+|+||+|++|+.++..|.+...+ ..+.+++.... .|....-.........++.......+.+.++|+||
T Consensus 1 rV~IvGAtG~vG~~l~~lL~~hp~~-----e~~~~~~~~~~----~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dvvf 71 (121)
T PF01118_consen 1 RVAIVGATGYVGRELLRLLAEHPDF-----ELVALVSSSRS----AGKPLSEVFPHPKGFEDLSVEDADPEELSDVDVVF 71 (121)
T ss_dssp EEEEESTTSHHHHHHHHHHHHTSTE-----EEEEEEESTTT----TTSBHHHTTGGGTTTEEEBEEETSGHHHTTESEEE
T ss_pred CEEEECCCCHHHHHHHHHHhcCCCc-----cEEEeeeeccc----cCCeeehhccccccccceeEeecchhHhhcCCEEE
Confidence 7999999999999999999885432 13455555321 11111111000011123333332345679999999
Q ss_pred Eec
Q 019990 87 MVG 89 (332)
Q Consensus 87 ~~a 89 (332)
.+.
T Consensus 72 ~a~ 74 (121)
T PF01118_consen 72 LAL 74 (121)
T ss_dssp E-S
T ss_pred ecC
Confidence 874
|
This family is also found in yeast and fungal Arg5,6 protein, which is cleaved into the enzymes N-acety-gamma-glutamyl-phosphate reductase and acetylglutamate kinase. These are also involved in arginine biosynthesis. All proteins in this entry contain a NAD binding region of semialdehyde dehydrogenase.; GO: 0016620 oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0006520 cellular amino acid metabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 3Q0E_B 1MB4_A 3PZR_A 1MC4_A 3TZ6_A 3VOS_A 2CVO_B 2R00_C 2QZ9_A 2EP5_C .... |
| >PRK12439 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=97.38 E-value=0.0033 Score=58.87 Aligned_cols=106 Identities=21% Similarity=0.178 Sum_probs=63.7
Q ss_pred CCCcEEEEEcCCChhHHHHHHHHHhcccCCCCCCeEEEEEecccchhhhhhhHhhh---hhh--ccCCccceEEeCCHHH
Q 019990 3 KNPLRVLVTGAAGQIGYALVPMIARGIMLGPDQPVILHMLDIEPAAEALNGVKMEL---IDA--AFPLLKGVVATTDVVE 77 (332)
Q Consensus 3 ~~~~kI~VtGaaG~IGs~l~~~L~~~~~~~~~~~~~i~l~D~~~~~~~~~~~~~dl---~~~--~~~~~~~v~~~~~~~~ 77 (332)
+.+|||+|+| +|.+|+.++..|.+.+ .++++..++ +..+....+- ... ......++..+.+..+
T Consensus 5 ~~~mkI~IiG-aGa~G~alA~~La~~g--------~v~l~~~~~--~~~~~i~~~~~~~~~l~~~~~l~~~i~~t~d~~~ 73 (341)
T PRK12439 5 KREPKVVVLG-GGSWGTTVASICARRG--------PTLQWVRSA--ETADDINDNHRNSRYLGNDVVLSDTLRATTDFAE 73 (341)
T ss_pred cCCCeEEEEC-CCHHHHHHHHHHHHCC--------CEEEEeCCH--HHHHHHHhcCCCcccCCCCcccCCCeEEECCHHH
Confidence 5678999999 6999999999998765 245565532 1221111100 000 0111234566678878
Q ss_pred HhCCCcEEEEecCCCCCCCCChhHHHhhhHHHHHHHHHHHHhhcCCCcEEEEEeCChh
Q 019990 78 ACKDVNIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEKHAAPNCKVLVVANPAN 135 (332)
Q Consensus 78 a~~~aDiVi~~ag~~~~~~~~~~~~~~~N~~~~~~i~~~i~~~~~~~~~viv~snp~~ 135 (332)
+++++|+||++.- ...++.+++.++.+-.++..++.++|.++
T Consensus 74 a~~~aDlVilavp----------------s~~~~~vl~~i~~~l~~~~~vIsl~kGi~ 115 (341)
T PRK12439 74 AANCADVVVMGVP----------------SHGFRGVLTELAKELRPWVPVVSLVKGLE 115 (341)
T ss_pred HHhcCCEEEEEeC----------------HHHHHHHHHHHHhhcCCCCEEEEEEeCCc
Confidence 8999999998731 12244556666655435556777777654
|
|
| >TIGR03376 glycerol3P_DH glycerol-3-phosphate dehydrogenase (NAD(+)) | Back alignment and domain information |
|---|
Probab=97.35 E-value=0.0032 Score=58.85 Aligned_cols=79 Identities=29% Similarity=0.382 Sum_probs=49.3
Q ss_pred EEEEEcCCChhHHHHHHHHHhcccCCCCC-CeEEEEEeccc---chhhhhhhHhhhhhhcc------CCccceEEeCCHH
Q 019990 7 RVLVTGAAGQIGYALVPMIARGIMLGPDQ-PVILHMLDIEP---AAEALNGVKMELIDAAF------PLLKGVVATTDVV 76 (332)
Q Consensus 7 kI~VtGaaG~IGs~l~~~L~~~~~~~~~~-~~~i~l~D~~~---~~~~~~~~~~dl~~~~~------~~~~~v~~~~~~~ 76 (332)
||+|+| +|.-|++++..|..++...... ..+|.++.+++ .. .+.. ..+-.+.+. .+..++..+.++.
T Consensus 1 kI~VIG-aG~wGtALA~~la~ng~~~~~~~~~~V~lw~~~~~~~~~-~~~~-~in~~~~n~~ylpgi~Lp~~i~at~dl~ 77 (342)
T TIGR03376 1 RVAVVG-SGNWGTAIAKIVAENARALPELFEESVRMWVFEEEIEGR-NLTE-IINTTHENVKYLPGIKLPANLVAVPDLV 77 (342)
T ss_pred CEEEEC-cCHHHHHHHHHHHHcCCcccccCCceEEEEEeccccCCH-HHHH-HHHhcCCCccccCCCcCCCCeEEECCHH
Confidence 699999 6999999999998866211100 02899998632 11 1111 111112111 1234677778998
Q ss_pred HHhCCCcEEEEe
Q 019990 77 EACKDVNIAVMV 88 (332)
Q Consensus 77 ~a~~~aDiVi~~ 88 (332)
++++++|+||+.
T Consensus 78 eal~~ADiIIlA 89 (342)
T TIGR03376 78 EAAKGADILVFV 89 (342)
T ss_pred HHHhcCCEEEEE
Confidence 999999998886
|
Members of this protein family are the eukaryotic enzyme, glycerol-3-phosphate dehydrogenase (NAD(+)) (EC 1.1.1.8). Enzymatic activity for 1.1.1.8 is defined as sn-glycerol 3-phosphate + NAD(+) = glycerone phosphate + NADH. Note the very similar reactions of enzymes defined as EC 1.1.1.94 and 1.1.99.5, assigned to families of proteins in the bacteria. |
| >PRK06522 2-dehydropantoate 2-reductase; Reviewed | Back alignment and domain information |
|---|
Probab=97.35 E-value=0.004 Score=57.04 Aligned_cols=105 Identities=16% Similarity=0.184 Sum_probs=58.0
Q ss_pred cEEEEEcCCChhHHHHHHHHHhcccCCCCCCeEEEEEecccchhhhhhhHhhhhhh-ccCCccceEEeCCHHHHhCCCcE
Q 019990 6 LRVLVTGAAGQIGYALVPMIARGIMLGPDQPVILHMLDIEPAAEALNGVKMELIDA-AFPLLKGVVATTDVVEACKDVNI 84 (332)
Q Consensus 6 ~kI~VtGaaG~IGs~l~~~L~~~~~~~~~~~~~i~l~D~~~~~~~~~~~~~dl~~~-~~~~~~~v~~~~~~~~a~~~aDi 84 (332)
|||+|+| +|.+|+.++..|.+.|. +|.+++++. +.......+-... .......+....+..+ .+++|+
T Consensus 1 m~I~IiG-~G~~G~~~a~~L~~~g~-------~V~~~~r~~--~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~-~~~~d~ 69 (304)
T PRK06522 1 MKIAILG-AGAIGGLFGAALAQAGH-------DVTLVARRG--AHLDALNENGLRLEDGEITVPVLAADDPAE-LGPQDL 69 (304)
T ss_pred CEEEEEC-CCHHHHHHHHHHHhCCC-------eEEEEECCh--HHHHHHHHcCCcccCCceeecccCCCChhH-cCCCCE
Confidence 4799999 69999999999998775 899999743 2222111100000 0000001111233433 488999
Q ss_pred EEEecCCCCCCCCChhHHHhhhHHHHHHHHHHHHhhcCCCcEEEEEeCChhhH
Q 019990 85 AVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEKHAAPNCKVLVVANPANTN 137 (332)
Q Consensus 85 Vi~~ag~~~~~~~~~~~~~~~N~~~~~~i~~~i~~~~~~~~~viv~snp~~~~ 137 (332)
||++.-.. . +..+++.+..+-.++..++...|.++..
T Consensus 70 vila~k~~-----~-----------~~~~~~~l~~~l~~~~~iv~~~nG~~~~ 106 (304)
T PRK06522 70 VILAVKAY-----Q-----------LPAALPSLAPLLGPDTPVLFLQNGVGHL 106 (304)
T ss_pred EEEecccc-----c-----------HHHHHHHHhhhcCCCCEEEEecCCCCcH
Confidence 99874211 0 1233444444332455677788876543
|
|
| >TIGR01289 LPOR light-dependent protochlorophyllide reductase | Back alignment and domain information |
|---|
Probab=97.35 E-value=0.00099 Score=61.61 Aligned_cols=119 Identities=11% Similarity=0.037 Sum_probs=66.4
Q ss_pred CcEEEEEcCCChhHHHHHHHHHhcc-cCCCCCCeEEEEEecccchhhhhhhHhhhhhhc--cC-CccceEEeCCHHHH--
Q 019990 5 PLRVLVTGAAGQIGYALVPMIARGI-MLGPDQPVILHMLDIEPAAEALNGVKMELIDAA--FP-LLKGVVATTDVVEA-- 78 (332)
Q Consensus 5 ~~kI~VtGaaG~IGs~l~~~L~~~~-~~~~~~~~~i~l~D~~~~~~~~~~~~~dl~~~~--~~-~~~~v~~~~~~~~a-- 78 (332)
.+.++||||++.||.+++..|++.| . +|++.+++. +.......++.... .. ...|++...+..++
T Consensus 3 ~k~vlITGas~GIG~aia~~L~~~G~~-------~V~l~~r~~--~~~~~~~~~l~~~~~~~~~~~~Dl~~~~~v~~~~~ 73 (314)
T TIGR01289 3 KPTVIITGASSGLGLYAAKALAATGEW-------HVIMACRDF--LKAEQAAKSLGMPKDSYTIMHLDLGSLDSVRQFVQ 73 (314)
T ss_pred CCEEEEECCCChHHHHHHHHHHHcCCC-------EEEEEeCCH--HHHHHHHHHhcCCCCeEEEEEcCCCCHHHHHHHHH
Confidence 3478999999999999999999887 5 788888753 22322222222110 00 11233333222222
Q ss_pred -----hCCCcEEEEecCCCCC----CCCChh---HHHhhhHHHH----HHHHHHHHhhcCCCcEEEEEeC
Q 019990 79 -----CKDVNIAVMVGGFPRK----EGMERK---DVMSKNVSIY----KAQASALEKHAAPNCKVLVVAN 132 (332)
Q Consensus 79 -----~~~aDiVi~~ag~~~~----~~~~~~---~~~~~N~~~~----~~i~~~i~~~~~~~~~viv~sn 132 (332)
+...|++|+.||.... +..+.+ ..+..|.... +.+++.+++.+...++||++|+
T Consensus 74 ~~~~~~~~iD~lI~nAG~~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~l~~m~~~~~~~g~IV~vsS 143 (314)
T TIGR01289 74 QFRESGRPLDALVCNAAVYFPTAKEPRFTADGFELSVGTNHLGHFLLCNLLLDDLKNSPNKDKRLIIVGS 143 (314)
T ss_pred HHHHhCCCCCEEEECCCccccCccccccCHHHHHHHHhhhhhHHHHHHHHHHHHHHhCCCCCCeEEEEec
Confidence 2358999999987321 112222 2456676554 4445555543211257777765
|
This model represents the light-dependent, NADPH-dependent form of protochlorophyllide reductase. It belongs to the short chain alcohol dehydrogenase family, in contrast to the nitrogenase-related light-independent form. |
| >COG2085 Predicted dinucleotide-binding enzymes [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.32 E-value=0.0032 Score=54.07 Aligned_cols=68 Identities=18% Similarity=0.166 Sum_probs=46.3
Q ss_pred CcEEEEEcCCChhHHHHHHHHHhcccCCCCCCeEEEEEecccchhhhhhhHhhhhhhccCCccceEEeCCHHHHhCCCcE
Q 019990 5 PLRVLVTGAAGQIGYALVPMIARGIMLGPDQPVILHMLDIEPAAEALNGVKMELIDAAFPLLKGVVATTDVVEACKDVNI 84 (332)
Q Consensus 5 ~~kI~VtGaaG~IGs~l~~~L~~~~~~~~~~~~~i~l~D~~~~~~~~~~~~~dl~~~~~~~~~~v~~~~~~~~a~~~aDi 84 (332)
||+++|+| +|.||+.|+.+|...++ +|.+-..+.. +.+......+. ..++. ....+|.+.+|+
T Consensus 1 m~~~~i~G-tGniG~alA~~~a~ag~-------eV~igs~r~~-~~~~a~a~~l~-------~~i~~-~~~~dA~~~aDV 63 (211)
T COG2085 1 MMIIAIIG-TGNIGSALALRLAKAGH-------EVIIGSSRGP-KALAAAAAALG-------PLITG-GSNEDAAALADV 63 (211)
T ss_pred CcEEEEec-cChHHHHHHHHHHhCCC-------eEEEecCCCh-hHHHHHHHhhc-------ccccc-CChHHHHhcCCE
Confidence 57888888 89999999999999886 7777755432 22332222221 11332 356788999999
Q ss_pred EEEec
Q 019990 85 AVMVG 89 (332)
Q Consensus 85 Vi~~a 89 (332)
||.+.
T Consensus 64 VvLAV 68 (211)
T COG2085 64 VVLAV 68 (211)
T ss_pred EEEec
Confidence 99873
|
|
| >PRK14618 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=97.28 E-value=0.0018 Score=60.35 Aligned_cols=76 Identities=26% Similarity=0.271 Sum_probs=49.8
Q ss_pred CCcEEEEEcCCChhHHHHHHHHHhcccCCCCCCeEEEEEecccchhhhhhhHhhhhhh----ccCCccceEEeCCHHHHh
Q 019990 4 NPLRVLVTGAAGQIGYALVPMIARGIMLGPDQPVILHMLDIEPAAEALNGVKMELIDA----AFPLLKGVVATTDVVEAC 79 (332)
Q Consensus 4 ~~~kI~VtGaaG~IGs~l~~~L~~~~~~~~~~~~~i~l~D~~~~~~~~~~~~~dl~~~----~~~~~~~v~~~~~~~~a~ 79 (332)
.+|||+|+| +|.+|+.++..|...++ +|++++++. +..+......... ......++....++.+++
T Consensus 3 ~~m~I~iIG-~G~mG~~ia~~L~~~G~-------~V~~~~r~~--~~~~~i~~~~~~~~~~~g~~~~~~~~~~~~~~e~~ 72 (328)
T PRK14618 3 HGMRVAVLG-AGAWGTALAVLAASKGV-------PVRLWARRP--EFAAALAAERENREYLPGVALPAELYPTADPEEAL 72 (328)
T ss_pred CCCeEEEEC-cCHHHHHHHHHHHHCCC-------eEEEEeCCH--HHHHHHHHhCcccccCCCCcCCCCeEEeCCHHHHH
Confidence 467999999 79999999999998876 899999853 2222111100000 011112245556777778
Q ss_pred CCCcEEEEec
Q 019990 80 KDVNIAVMVG 89 (332)
Q Consensus 80 ~~aDiVi~~a 89 (332)
+++|+||.+.
T Consensus 73 ~~aD~Vi~~v 82 (328)
T PRK14618 73 AGADFAVVAV 82 (328)
T ss_pred cCCCEEEEEC
Confidence 9999998874
|
|
| >KOG2774 consensus NAD dependent epimerase [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.19 E-value=0.00056 Score=59.26 Aligned_cols=181 Identities=17% Similarity=0.169 Sum_probs=105.6
Q ss_pred CCcEEEEEcCCChhHHHHHHHHHhcccCCCCCCeEEEEEecccchhhhhhhHhhhhhhccCC-ccceEEeCCHHHHhC--
Q 019990 4 NPLRVLVTGAAGQIGYALVPMIARGIMLGPDQPVILHMLDIEPAAEALNGVKMELIDAAFPL-LKGVVATTDVVEACK-- 80 (332)
Q Consensus 4 ~~~kI~VtGaaG~IGs~l~~~L~~~~~~~~~~~~~i~l~D~~~~~~~~~~~~~dl~~~~~~~-~~~v~~~~~~~~a~~-- 80 (332)
++.||+||||-|..|.-++..|...- |. ..+.|-|+.... ..+. +. .|+ ..++-+..++++.+-
T Consensus 43 ~~PrvLITG~LGQLG~~~A~LLR~~y--Gs---~~VILSDI~KPp----~~V~---~~-GPyIy~DILD~K~L~eIVVn~ 109 (366)
T KOG2774|consen 43 KAPRVLITGSLGQLGRGLASLLRYMY--GS---ECVILSDIVKPP----ANVT---DV-GPYIYLDILDQKSLEEIVVNK 109 (366)
T ss_pred CCCeEEEecchHHHhHHHHHHHHHHh--CC---ccEehhhccCCc----hhhc---cc-CCchhhhhhccccHHHhhccc
Confidence 45799999999999999999886431 11 267888875321 1111 11 122 234545556666553
Q ss_pred CCcEEEEecCCCCCCCCChhH-HHhhhHHHHHHHHHHHHhhcCCCcEEEEEeCChhhHHHHHHHH-CC--CC-CCCcEEE
Q 019990 81 DVNIAVMVGGFPRKEGMERKD-VMSKNVSIYKAQASALEKHAAPNCKVLVVANPANTNALILKEF-AP--SI-PAKNITC 155 (332)
Q Consensus 81 ~aDiVi~~ag~~~~~~~~~~~-~~~~N~~~~~~i~~~i~~~~~~~~~viv~snp~~~~~~~~~~~-~~--~~-~~~~i~~ 155 (332)
..|-.||..+.-...|+.... -.+.|+.++.++++.++++. .++.+-|. +....+...+. .+ .+ .|+.|||
T Consensus 110 RIdWL~HfSALLSAvGE~NVpLA~~VNI~GvHNil~vAa~~k---L~iFVPST-IGAFGPtSPRNPTPdltIQRPRTIYG 185 (366)
T KOG2774|consen 110 RIDWLVHFSALLSAVGETNVPLALQVNIRGVHNILQVAAKHK---LKVFVPST-IGAFGPTSPRNPTPDLTIQRPRTIYG 185 (366)
T ss_pred ccceeeeHHHHHHHhcccCCceeeeecchhhhHHHHHHHHcC---eeEeeccc-ccccCCCCCCCCCCCeeeecCceeec
Confidence 467788853321111211111 24679999999999999883 45444331 11111100000 00 01 2455999
Q ss_pred eecccHHHHHHHHHHHcCCCCCCeeeeEEEec---CC---CceeecccCccc
Q 019990 156 LTRLDHNRAMGQISERLKVHVSDVKNVIIWGN---HS---STQYPDVNHATV 201 (332)
Q Consensus 156 ~t~l~~~r~~~~~a~~~~v~~~~v~~~~V~G~---hg---~~~v~~~s~~~v 201 (332)
+++...+-+-..+-.++|++....|..-++.. .| +-.+..|..+..
T Consensus 186 VSKVHAEL~GEy~~hrFg~dfr~~rfPg~is~~~pgggttdya~A~f~~Al~ 237 (366)
T KOG2774|consen 186 VSKVHAELLGEYFNHRFGVDFRSMRFPGIISATKPGGGTTDYAIAIFYDALQ 237 (366)
T ss_pred hhHHHHHHHHHHHHhhcCccceecccCcccccCCCCCCcchhHHHHHHHHHH
Confidence 99999888888888899999888885544432 12 335666766665
|
|
| >PTZ00345 glycerol-3-phosphate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=97.16 E-value=0.0054 Score=57.79 Aligned_cols=83 Identities=22% Similarity=0.277 Sum_probs=52.4
Q ss_pred CCcEEEEEcCCChhHHHHHHHHHhcccCCCCCCeEEEEEecccchhhhhhhHhhhh--hhcc------CCccceEEeCCH
Q 019990 4 NPLRVLVTGAAGQIGYALVPMIARGIMLGPDQPVILHMLDIEPAAEALNGVKMELI--DAAF------PLLKGVVATTDV 75 (332)
Q Consensus 4 ~~~kI~VtGaaG~IGs~l~~~L~~~~~~~~~~~~~i~l~D~~~~~~~~~~~~~dl~--~~~~------~~~~~v~~~~~~ 75 (332)
+.+||+|+| +|.-|++++..|..++.....-..+|.++.+++.. .-.....++. +.+. .+..++..++|+
T Consensus 10 ~~~ki~ViG-aG~wGtAlA~~l~~n~~~~~~~~~~V~lw~~~~~~-~~~~~~~~in~~~~N~~ylp~~~Lp~ni~~tsdl 87 (365)
T PTZ00345 10 GPLKVSVIG-SGNWGSAISKVVGENTQRNYIFHNEVRMWVLEEIV-EGEKLSDIINTKHENVKYLPGIKLPDNIVAVSDL 87 (365)
T ss_pred CCCeEEEEC-CCHHHHHHHHHHHhcCCcccCCCCeEEEEEecccc-cchHHHHHHHhcCCCcccCCCCcCCCceEEecCH
Confidence 468999999 69999999999987752100000278888765310 0011122332 1121 234577778888
Q ss_pred HHHhCCCcEEEEe
Q 019990 76 VEACKDVNIAVMV 88 (332)
Q Consensus 76 ~~a~~~aDiVi~~ 88 (332)
.++++++|+||+.
T Consensus 88 ~eav~~aDiIvlA 100 (365)
T PTZ00345 88 KEAVEDADLLIFV 100 (365)
T ss_pred HHHHhcCCEEEEE
Confidence 8899999988876
|
|
| >PRK14620 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=97.12 E-value=0.0084 Score=55.76 Aligned_cols=103 Identities=11% Similarity=0.234 Sum_probs=61.5
Q ss_pred cEEEEEcCCChhHHHHHHHHHhcccCCCCCCeEEEEEecccchhhhhhhHhhhhhhc----cCCccceEEeCCHHHHh-C
Q 019990 6 LRVLVTGAAGQIGYALVPMIARGIMLGPDQPVILHMLDIEPAAEALNGVKMELIDAA----FPLLKGVVATTDVVEAC-K 80 (332)
Q Consensus 6 ~kI~VtGaaG~IGs~l~~~L~~~~~~~~~~~~~i~l~D~~~~~~~~~~~~~dl~~~~----~~~~~~v~~~~~~~~a~-~ 80 (332)
|||+|+| +|.+|+.++..|.+.+. +|.+++++. +..+....+-.+.. .....++..+.+..+++ .
T Consensus 1 MkI~IiG-aGa~G~ala~~L~~~g~-------~V~l~~r~~--~~~~~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~ 70 (326)
T PRK14620 1 MKISILG-AGSFGTAIAIALSSKKI-------SVNLWGRNH--TTFESINTKRKNLKYLPTCHLPDNISVKSAIDEVLSD 70 (326)
T ss_pred CEEEEEC-cCHHHHHHHHHHHHCCC-------eEEEEecCH--HHHHHHHHcCCCcccCCCCcCCCCeEEeCCHHHHHhC
Confidence 4799999 69999999999998875 789999853 22221111100010 01123455566777776 5
Q ss_pred CCcEEEEecCCCCCCCCChhHHHhhhHHHHHHHHHHHHh-hcCCCcEEEEEeCCh
Q 019990 81 DVNIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEK-HAAPNCKVLVVANPA 134 (332)
Q Consensus 81 ~aDiVi~~ag~~~~~~~~~~~~~~~N~~~~~~i~~~i~~-~~~~~~~viv~snp~ 134 (332)
++|+||++.- ...+.++++.+.. +-.++..++..+|-.
T Consensus 71 ~~Dliiiavk----------------s~~~~~~l~~l~~~~l~~~~~vv~~~nGi 109 (326)
T PRK14620 71 NATCIILAVP----------------TQQLRTICQQLQDCHLKKNTPILICSKGI 109 (326)
T ss_pred CCCEEEEEeC----------------HHHHHHHHHHHHHhcCCCCCEEEEEEcCe
Confidence 8999998731 1113344455544 323455667777765
|
|
| >COG0702 Predicted nucleoside-diphosphate-sugar epimerases [Cell envelope biogenesis, outer membrane / Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.12 E-value=0.00076 Score=60.48 Aligned_cols=75 Identities=23% Similarity=0.286 Sum_probs=51.2
Q ss_pred cEEEEEcCCChhHHHHHHHHHhcccCCCCCCeEEEEEecccchhhhhhhHhhhhhhccCCccceEEeCCHHHHhCCCcEE
Q 019990 6 LRVLVTGAAGQIGYALVPMIARGIMLGPDQPVILHMLDIEPAAEALNGVKMELIDAAFPLLKGVVATTDVVEACKDVNIA 85 (332)
Q Consensus 6 ~kI~VtGaaG~IGs~l~~~L~~~~~~~~~~~~~i~l~D~~~~~~~~~~~~~dl~~~~~~~~~~v~~~~~~~~a~~~aDiV 85 (332)
++|+||||+|++|++++..|+..+. +|+..-++. +.+.... ... .....++.....+..++++.|.+
T Consensus 1 ~~ilV~GatG~~G~~~~~~L~~~~~-------~v~~~~r~~--~~~~~~~---~~v-~~~~~d~~~~~~l~~a~~G~~~~ 67 (275)
T COG0702 1 MKILVTGATGFVGGAVVRELLARGH-------EVRAAVRNP--EAAAALA---GGV-EVVLGDLRDPKSLVAGAKGVDGV 67 (275)
T ss_pred CeEEEEecccchHHHHHHHHHhCCC-------EEEEEEeCH--HHHHhhc---CCc-EEEEeccCCHhHHHHHhccccEE
Confidence 4799999999999999999998865 677766543 2222111 111 01124555666777889999999
Q ss_pred EEecCCCC
Q 019990 86 VMVGGFPR 93 (332)
Q Consensus 86 i~~ag~~~ 93 (332)
+++.+...
T Consensus 68 ~~i~~~~~ 75 (275)
T COG0702 68 LLISGLLD 75 (275)
T ss_pred EEEecccc
Confidence 99876543
|
|
| >KOG2304 consensus 3-hydroxyacyl-CoA dehydrogenase [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.11 E-value=0.0012 Score=56.92 Aligned_cols=105 Identities=23% Similarity=0.377 Sum_probs=69.1
Q ss_pred CCcEEEEEcCCChhHHHHHHHHHhcccCCCCCCeEEEEEecccchhhhh----hhHhhhhhhcc------CC--------
Q 019990 4 NPLRVLVTGAAGQIGYALVPMIARGIMLGPDQPVILHMLDIEPAAEALN----GVKMELIDAAF------PL-------- 65 (332)
Q Consensus 4 ~~~kI~VtGaaG~IGs~l~~~L~~~~~~~~~~~~~i~l~D~~~~~~~~~----~~~~dl~~~~~------~~-------- 65 (332)
+.+.|+|+| +|..||-+++.-+..|+ .|.|+|.+++ .+. +....+.+.+. +.
T Consensus 10 ~~~~V~ivG-aG~MGSGIAQv~a~sg~-------~V~l~d~~~~--aL~~A~~~I~~sl~rvakKk~~~~~~~~~e~v~~ 79 (298)
T KOG2304|consen 10 EIKNVAIVG-AGQMGSGIAQVAATSGL-------NVWLVDANED--ALSRATKAISSSLKRVAKKKKADDPVALEEFVDD 79 (298)
T ss_pred cccceEEEc-ccccchhHHHHHHhcCC-------ceEEecCCHH--HHHHHHHHHHHHHHHHHhhcccCChhhHHHHHHH
Confidence 456799999 69999999999888887 8999998642 222 11222222110 10
Q ss_pred -ccceEEeCCHHHHhCCCcEEEEecCCCCCCCCChhHHHhhhHHHHHHHHHHHHhhcCCCcEEEEEeCCh
Q 019990 66 -LKGVVATTDVVEACKDVNIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEKHAAPNCKVLVVANPA 134 (332)
Q Consensus 66 -~~~v~~~~~~~~a~~~aDiVi~~ag~~~~~~~~~~~~~~~N~~~~~~i~~~i~~~~~~~~~viv~snp~ 134 (332)
...+..++++.+++.++|+||- -...|+++-+.+.+.+.+.|.++. +++||..
T Consensus 80 ~l~ri~~~tnv~~~v~dadliiE--------------AivEn~diK~~lF~~l~~~ak~~~--il~tNTS 133 (298)
T KOG2304|consen 80 TLDRIKTSTNVSDAVSDADLIIE--------------AIVENLDIKRKLFKDLDKIAKSST--ILATNTS 133 (298)
T ss_pred HHHHHHHcCCHHHhhhhhHHHHH--------------HHHHhHHHHHHHHHHHHhhcccce--EEeeccc
Confidence 1233445666677777777652 245688889999999999985443 5667753
|
|
| >PRK14619 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=97.10 E-value=0.0059 Score=56.34 Aligned_cols=53 Identities=15% Similarity=0.228 Sum_probs=42.7
Q ss_pred CCcEEEEEcCCChhHHHHHHHHHhcccCCCCCCeEEEEEecccchhhhhhhHhhhhhhccCCccceEEeCCHHHHhCCCc
Q 019990 4 NPLRVLVTGAAGQIGYALVPMIARGIMLGPDQPVILHMLDIEPAAEALNGVKMELIDAAFPLLKGVVATTDVVEACKDVN 83 (332)
Q Consensus 4 ~~~kI~VtGaaG~IGs~l~~~L~~~~~~~~~~~~~i~l~D~~~~~~~~~~~~~dl~~~~~~~~~~v~~~~~~~~a~~~aD 83 (332)
+.|||+|+| +|.+|++++..|...++ +|.++|++.. .++.++++++|
T Consensus 3 ~~m~I~iiG-~G~~G~~lA~~l~~~G~-------~V~~~~r~~~-------------------------~~~~~~~~~ad 49 (308)
T PRK14619 3 QPKTIAILG-AGAWGSTLAGLASANGH-------RVRVWSRRSG-------------------------LSLAAVLADAD 49 (308)
T ss_pred CCCEEEEEC-ccHHHHHHHHHHHHCCC-------EEEEEeCCCC-------------------------CCHHHHHhcCC
Confidence 467999999 79999999999998886 8999997421 23456678899
Q ss_pred EEEEec
Q 019990 84 IAVMVG 89 (332)
Q Consensus 84 iVi~~a 89 (332)
+||++.
T Consensus 50 vvi~~v 55 (308)
T PRK14619 50 VIVSAV 55 (308)
T ss_pred EEEEEC
Confidence 998874
|
|
| >PRK08655 prephenate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=97.07 E-value=0.018 Score=55.83 Aligned_cols=66 Identities=21% Similarity=0.366 Sum_probs=46.2
Q ss_pred cEEEEEcCCChhHHHHHHHHHhcccCCCCCCeEEEEEecccchhhhhhhHhhhhhhccCCccceEEeCCHHHHhCCCcEE
Q 019990 6 LRVLVTGAAGQIGYALVPMIARGIMLGPDQPVILHMLDIEPAAEALNGVKMELIDAAFPLLKGVVATTDVVEACKDVNIA 85 (332)
Q Consensus 6 ~kI~VtGaaG~IGs~l~~~L~~~~~~~~~~~~~i~l~D~~~~~~~~~~~~~dl~~~~~~~~~~v~~~~~~~~a~~~aDiV 85 (332)
|||+|+||+|.+|..++..|...++ +|.++|++. +.......++ .+....+..+++.++|+|
T Consensus 1 MkI~IIGG~G~mG~slA~~L~~~G~-------~V~v~~r~~--~~~~~~a~~~---------gv~~~~~~~e~~~~aDvV 62 (437)
T PRK08655 1 MKISIIGGTGGLGKWFARFLKEKGF-------EVIVTGRDP--KKGKEVAKEL---------GVEYANDNIDAAKDADIV 62 (437)
T ss_pred CEEEEEecCCHHHHHHHHHHHHCCC-------EEEEEECCh--HHHHHHHHHc---------CCeeccCHHHHhccCCEE
Confidence 4799999889999999999998775 789999753 1211111111 122345666778999999
Q ss_pred EEec
Q 019990 86 VMVG 89 (332)
Q Consensus 86 i~~a 89 (332)
|++.
T Consensus 63 Ilav 66 (437)
T PRK08655 63 IISV 66 (437)
T ss_pred EEec
Confidence 9875
|
|
| >cd01078 NAD_bind_H4MPT_DH NADP binding domain of methylene tetrahydromethanopterin dehydrogenase | Back alignment and domain information |
|---|
Probab=97.03 E-value=0.0023 Score=54.84 Aligned_cols=78 Identities=14% Similarity=0.140 Sum_probs=48.5
Q ss_pred CCcEEEEEcCCChhHHHHHHHHHhcccCCCCCCeEEEEEecccchhhhhhhHhhhhhh-ccCC-ccceEEeCCHHHHhCC
Q 019990 4 NPLRVLVTGAAGQIGYALVPMIARGIMLGPDQPVILHMLDIEPAAEALNGVKMELIDA-AFPL-LKGVVATTDVVEACKD 81 (332)
Q Consensus 4 ~~~kI~VtGaaG~IGs~l~~~L~~~~~~~~~~~~~i~l~D~~~~~~~~~~~~~dl~~~-~~~~-~~~v~~~~~~~~a~~~ 81 (332)
+.++++|+||+|.+|+.++..|...+. ++.+++++. +++.....++.+. .... ..+.....++.+++++
T Consensus 27 ~~~~vlVlGgtG~iG~~~a~~l~~~g~-------~V~l~~R~~--~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 97 (194)
T cd01078 27 KGKTAVVLGGTGPVGQRAAVLLAREGA-------RVVLVGRDL--ERAQKAADSLRARFGEGVGAVETSDDAARAAAIKG 97 (194)
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHCCC-------EEEEEcCCH--HHHHHHHHHHHhhcCCcEEEeeCCCHHHHHHHHhc
Confidence 457899999999999999999988764 788888753 3343333333211 0000 0111112334577899
Q ss_pred CcEEEEecC
Q 019990 82 VNIAVMVGG 90 (332)
Q Consensus 82 aDiVi~~ag 90 (332)
+|+||.+..
T Consensus 98 ~diVi~at~ 106 (194)
T cd01078 98 ADVVFAAGA 106 (194)
T ss_pred CCEEEECCC
Confidence 999887643
|
Methylene Tetrahydromethanopterin Dehydrogenase (H4MPT DH) NADP binding domain. NADP-dependent H4MPT DH catalyzes the dehydrogenation of methylene- H4MPT and methylene-tetrahydrofolate (H4F) with NADP+ as cofactor. H4F and H4MPT are both cofactors that carry the one-carbon units between the formyl and methyl oxidation level. H4F and H4MPT are structurally analogous to each other with respect to the pterin moiety, but each has distinct side chain. H4MPT is present only in anaerobic methanogenic archaea and aerobic methylotrophic proteobacteria. H4MPT seems to have evolved independently from H4F and functions as a distinct carrier in C1 metabolism. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclo |
| >PRK09620 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=97.02 E-value=0.00062 Score=60.00 Aligned_cols=34 Identities=21% Similarity=0.216 Sum_probs=29.8
Q ss_pred CCcEEEEEcCC----------------ChhHHHHHHHHHhcccCCCCCCeEEEEEec
Q 019990 4 NPLRVLVTGAA----------------GQIGYALVPMIARGIMLGPDQPVILHMLDI 44 (332)
Q Consensus 4 ~~~kI~VtGaa----------------G~IGs~l~~~L~~~~~~~~~~~~~i~l~D~ 44 (332)
..+||+||+|. ||+|++++..|+..|. +|+++|.
T Consensus 2 ~gk~vlITaG~T~E~iD~VR~itN~SSGfiGs~LA~~L~~~Ga-------~V~li~g 51 (229)
T PRK09620 2 KGKKVLITSGGCLEKWDQVRGHTNMAKGTIGRIIAEELISKGA-------HVIYLHG 51 (229)
T ss_pred CCCEEEEeCCCccCCcCCeeEecCCCcCHHHHHHHHHHHHCCC-------eEEEEeC
Confidence 45789999887 9999999999999886 8998885
|
|
| >PF08659 KR: KR domain; InterPro: IPR013968 This domain is found in bacterial polyketide synthases that catalyse the first step in the reductive modification of the beta-carbonyl centres in the growing polyketide chain | Back alignment and domain information |
|---|
Probab=96.94 E-value=0.0044 Score=52.48 Aligned_cols=118 Identities=18% Similarity=0.170 Sum_probs=61.8
Q ss_pred EEEEEcCCChhHHHHHHHHHhcccCCCCCCeEEEEEeccc-chhhhhhhHhhhhhhcc---CCccceEEeCCHHHHhC--
Q 019990 7 RVLVTGAAGQIGYALVPMIARGIMLGPDQPVILHMLDIEP-AAEALNGVKMELIDAAF---PLLKGVVATTDVVEACK-- 80 (332)
Q Consensus 7 kI~VtGaaG~IGs~l~~~L~~~~~~~~~~~~~i~l~D~~~-~~~~~~~~~~dl~~~~~---~~~~~v~~~~~~~~a~~-- 80 (332)
.++||||.|.+|..++..|...+. .+++++.+.. ..........++..... ....|++...++.+++.
T Consensus 2 tylitGG~gglg~~la~~La~~~~------~~~il~~r~~~~~~~~~~~i~~l~~~g~~v~~~~~Dv~d~~~v~~~~~~~ 75 (181)
T PF08659_consen 2 TYLITGGLGGLGQSLARWLAERGA------RRLILLGRSGAPSAEAEAAIRELESAGARVEYVQCDVTDPEAVAAALAQL 75 (181)
T ss_dssp EEEEETTTSHHHHHHHHHHHHTT-------SEEEEEESSGGGSTTHHHHHHHHHHTT-EEEEEE--TTSHHHHHHHHHTS
T ss_pred EEEEECCccHHHHHHHHHHHHcCC------CEEEEeccCCCccHHHHHHHHHHHhCCCceeeeccCccCHHHHHHHHHHH
Confidence 478999999999999999998774 2788988862 11112222333332211 11234444444444443
Q ss_pred -----CCcEEEEecCCCCCC---CCChhH---HHhhhHHHHHHHHHHHHhhcCCCcEEEEEeC
Q 019990 81 -----DVNIAVMVGGFPRKE---GMERKD---VMSKNVSIYKAQASALEKHAAPNCKVLVVAN 132 (332)
Q Consensus 81 -----~aDiVi~~ag~~~~~---~~~~~~---~~~~N~~~~~~i~~~i~~~~~~~~~viv~sn 132 (332)
..|.|||+||..... ..+..+ .+...+....++.+...... .+ .++++|+
T Consensus 76 ~~~~~~i~gVih~ag~~~~~~~~~~t~~~~~~~~~~Kv~g~~~L~~~~~~~~-l~-~~i~~SS 136 (181)
T PF08659_consen 76 RQRFGPIDGVIHAAGVLADAPIQDQTPDEFDAVLAPKVRGLWNLHEALENRP-LD-FFILFSS 136 (181)
T ss_dssp HTTSS-EEEEEE-------B-GCC--HHHHHHHHHHHHHHHHHHHHHHTTTT-TS-EEEEEEE
T ss_pred HhccCCcceeeeeeeeecccccccCCHHHHHHHHhhhhhHHHHHHHHhhcCC-CC-eEEEECC
Confidence 347899999875421 222222 34455677778777777642 44 4566664
|
It uses NADPH to reduce the keto group to a hydroxy group. ; PDB: 3QP9_D 2FR0_A 2FR1_A 2Z5L_A 3SLK_B 3MJE_B 3MJC_A 3MJT_B 3MJV_A 3MJS_B .... |
| >PF01488 Shikimate_DH: Shikimate / quinate 5-dehydrogenase; InterPro: IPR006151 This entry represents a domain found in shikimate and quinate dehydrogenases, as well as glutamyl-tRNA reductases | Back alignment and domain information |
|---|
Probab=96.88 E-value=0.0066 Score=48.87 Aligned_cols=77 Identities=21% Similarity=0.204 Sum_probs=51.6
Q ss_pred CCcEEEEEcCCChhHHHHHHHHHhcccCCCCCCeEEEEEecccchhhhhhhHhhhhhhccCCccceEEeCCHHHHhCCCc
Q 019990 4 NPLRVLVTGAAGQIGYALVPMIARGIMLGPDQPVILHMLDIEPAAEALNGVKMELIDAAFPLLKGVVATTDVVEACKDVN 83 (332)
Q Consensus 4 ~~~kI~VtGaaG~IGs~l~~~L~~~~~~~~~~~~~i~l~D~~~~~~~~~~~~~dl~~~~~~~~~~v~~~~~~~~a~~~aD 83 (332)
..++|+|+| +|.+|+.++..|...+. .+|.+++++. ++++.....+.. ....+....++.+.+.++|
T Consensus 11 ~~~~vlviG-aGg~ar~v~~~L~~~g~------~~i~i~nRt~--~ra~~l~~~~~~----~~~~~~~~~~~~~~~~~~D 77 (135)
T PF01488_consen 11 KGKRVLVIG-AGGAARAVAAALAALGA------KEITIVNRTP--ERAEALAEEFGG----VNIEAIPLEDLEEALQEAD 77 (135)
T ss_dssp TTSEEEEES-SSHHHHHHHHHHHHTTS------SEEEEEESSH--HHHHHHHHHHTG----CSEEEEEGGGHCHHHHTES
T ss_pred CCCEEEEEC-CHHHHHHHHHHHHHcCC------CEEEEEECCH--HHHHHHHHHcCc----cccceeeHHHHHHHHhhCC
Confidence 467999999 69999999999998875 2799999853 334333333211 0112333456667788999
Q ss_pred EEEEecCCCC
Q 019990 84 IAVMVGGFPR 93 (332)
Q Consensus 84 iVi~~ag~~~ 93 (332)
+||.+.+.+.
T Consensus 78 ivI~aT~~~~ 87 (135)
T PF01488_consen 78 IVINATPSGM 87 (135)
T ss_dssp EEEE-SSTTS
T ss_pred eEEEecCCCC
Confidence 9999876543
|
Shikimate 5-dehydrogenase (1.1.1.25 from EC) catalyses the conversion of shikimate to 5-dehydroshikimate [, ]. This reaction is part of the shikimate pathway which is involved in the biosynthesis of aromatic amino acids []. Quinate 5-dehydrogenase catalyses the conversion of quinate to 5-dehydroquinate. This reaction is part of the quinate pathway where quinic acid is exploited as a source of carbon in prokaryotes and microbial eukaryotes. Both the shikimate and quinate pathways share two common pathway metabolites, 3-dehydroquinate and dehydroshikimate. Glutamyl-tRNA reductase (1.2.1.70 from EC) catalyzes the first step of tetrapyrrole biosynthesis in plants, archaea and most bacteria. The dimeric enzyme has an unusual V-shaped architecture where each monomer consists of three domains linked by a long 'spinal' alpha-helix. The central catalytic domain specifically recognises the glutamate moiety of the substrate []. ; PDB: 2EV9_B 2CY0_B 1WXD_A 2D5C_A 1NVT_B 2EGG_A 3PWZ_A 3DOO_A 3DON_A 3FBT_C .... |
| >PLN02730 enoyl-[acyl-carrier-protein] reductase | Back alignment and domain information |
|---|
Probab=96.85 E-value=0.04 Score=50.76 Aligned_cols=159 Identities=14% Similarity=0.072 Sum_probs=84.0
Q ss_pred CCCcEEEEEcC--CChhHHHHHHHHHhcccCCCCCCeEEEEEecccchhhhhhhHhhhhh-----------h-----ccC
Q 019990 3 KNPLRVLVTGA--AGQIGYALVPMIARGIMLGPDQPVILHMLDIEPAAEALNGVKMELID-----------A-----AFP 64 (332)
Q Consensus 3 ~~~~kI~VtGa--aG~IGs~l~~~L~~~~~~~~~~~~~i~l~D~~~~~~~~~~~~~dl~~-----------~-----~~~ 64 (332)
.+.+.++|||| +.-||.+++..|++.|. +|++ .+.. +.++....++.. . ...
T Consensus 7 l~gk~alITGa~~s~GIG~a~A~~la~~Ga-------~Vv~-~~~~--~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 76 (303)
T PLN02730 7 LRGKRAFIAGVADDNGYGWAIAKALAAAGA-------EILV-GTWV--PALNIFETSLRRGKFDESRKLPDGSLMEITKV 76 (303)
T ss_pred CCCCEEEEeCCCCCCcHHHHHHHHHHHCCC-------EEEE-EeCc--chhhHHHHhhhccccchhhhcccccccCcCee
Confidence 34678999998 68999999999999885 7777 3221 122222211110 0 000
Q ss_pred CccceEE--eC------------------CHHHH-------hCCCcEEEEecCCCC---CC--CCChhH---HHhhhHHH
Q 019990 65 LLKGVVA--TT------------------DVVEA-------CKDVNIAVMVGGFPR---KE--GMERKD---VMSKNVSI 109 (332)
Q Consensus 65 ~~~~v~~--~~------------------~~~~a-------~~~aDiVi~~ag~~~---~~--~~~~~~---~~~~N~~~ 109 (332)
+..|+.. .. ++.+. +-..|++|+.||... .+ ..+.++ .+..|+..
T Consensus 77 ~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~i~~~~G~iDiLVnNAG~~~~~~~~~~~~~~e~~~~~~~vN~~~ 156 (303)
T PLN02730 77 YPLDAVFDTPEDVPEDVKTNKRYAGSSNWTVQEVAESVKADFGSIDILVHSLANGPEVTKPLLETSRKGYLAAISASSYS 156 (303)
T ss_pred eecceecCccccCchhhhcccccccCCHHHHHHHHHHHHHHcCCCCEEEECCCccccCCCChhhCCHHHHHHHHHHHhHH
Confidence 1123311 11 12221 235799999996421 11 223322 35667665
Q ss_pred HHHHHHHHHhhcCCCcEEEEEeCChhhHHHHHHHHCCCCCCCc-EEEeecccHHHHHHHHHHHcCCCCCCeee
Q 019990 110 YKAQASALEKHAAPNCKVLVVANPANTNALILKEFAPSIPAKN-ITCLTRLDHNRAMGQISERLKVHVSDVKN 181 (332)
Q Consensus 110 ~~~i~~~i~~~~~~~~~viv~snp~~~~~~~~~~~~~~~~~~~-i~~~t~l~~~r~~~~~a~~~~v~~~~v~~ 181 (332)
.-.+.+.+...-...+.+|++|+.... ...|... .|+.+|-.-..+.+.++..++- ...||.
T Consensus 157 ~~~l~~~~~p~m~~~G~II~isS~a~~---------~~~p~~~~~Y~asKaAl~~l~~~la~El~~-~~gIrV 219 (303)
T PLN02730 157 FVSLLQHFGPIMNPGGASISLTYIASE---------RIIPGYGGGMSSAKAALESDTRVLAFEAGR-KYKIRV 219 (303)
T ss_pred HHHHHHHHHHHHhcCCEEEEEechhhc---------CCCCCCchhhHHHHHHHHHHHHHHHHHhCc-CCCeEE
Confidence 555544443331123577777652211 1122222 4677888888888888888752 245664
|
|
| >COG1028 FabG Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) [Secondary metabolites biosynthesis, transport, and catabolism / General function prediction only] | Back alignment and domain information |
|---|
Probab=96.85 E-value=0.015 Score=51.51 Aligned_cols=153 Identities=17% Similarity=0.134 Sum_probs=78.4
Q ss_pred CCCCCcEEEEEcCCChhHHHHHHHHHhcccCCCCCCeEEEEEecccchhhhhhhHhhhh----hhccCCccceEE-eCCH
Q 019990 1 MAKNPLRVLVTGAAGQIGYALVPMIARGIMLGPDQPVILHMLDIEPAAEALNGVKMELI----DAAFPLLKGVVA-TTDV 75 (332)
Q Consensus 1 m~~~~~kI~VtGaaG~IGs~l~~~L~~~~~~~~~~~~~i~l~D~~~~~~~~~~~~~dl~----~~~~~~~~~v~~-~~~~ 75 (332)
|...++.|+||||++-||..++..|.+.|. .+++.................. ........|++. ..+.
T Consensus 1 ~~~~~~~ilITGas~GiG~aia~~l~~~G~-------~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dvs~~~~~v 73 (251)
T COG1028 1 MDLSGKVALVTGASSGIGRAIARALAREGA-------RVVVAARRSEEEAAEALAAAIKEAGGGRAAAVAADVSDDEESV 73 (251)
T ss_pred CCCCCCEEEEeCCCCHHHHHHHHHHHHCCC-------eEEEEcCCCchhhHHHHHHHHHhcCCCcEEEEEecCCCCHHHH
Confidence 456778999999999999999999998775 5555544321100111111111 011111123332 2111
Q ss_pred H-------HHhCCCcEEEEecCCCCC----CCCChh---HHHhhhHHHHHHHHHHHHhhcCCCcEEEEEeCChhhHHHHH
Q 019990 76 V-------EACKDVNIAVMVGGFPRK----EGMERK---DVMSKNVSIYKAQASALEKHAAPNCKVLVVANPANTNALIL 141 (332)
Q Consensus 76 ~-------~a~~~aDiVi~~ag~~~~----~~~~~~---~~~~~N~~~~~~i~~~i~~~~~~~~~viv~snp~~~~~~~~ 141 (332)
. +.+-..|++|+.||.... ...+.+ ..+..|......+...+....... +++++++.... .
T Consensus 74 ~~~~~~~~~~~g~id~lvnnAg~~~~~~~~~~~~~~~~~~~~~~n~~g~~~~~~~~~~~~~~~-~Iv~isS~~~~-~--- 148 (251)
T COG1028 74 EALVAAAEEEFGRIDILVNNAGIAGPDAPLEELTEEDWDRVIDVNLLGAFLLTRAALPLMKKQ-RIVNISSVAGL-G--- 148 (251)
T ss_pred HHHHHHHHHHcCCCCEEEECCCCCCCCCChhhCCHHHHHHHHHHhHHHHHHHHHHHHHhhhhC-eEEEECCchhc-C---
Confidence 1 112348999999987431 122222 345667654444444443332123 56666653321 1
Q ss_pred HHHCCCCCC-CcEEEeecccHHHHHHHHHHH
Q 019990 142 KEFAPSIPA-KNITCLTRLDHNRAMGQISER 171 (332)
Q Consensus 142 ~~~~~~~~~-~~i~~~t~l~~~r~~~~~a~~ 171 (332)
.+. ...|+.+|..-..+...++..
T Consensus 149 ------~~~~~~~Y~~sK~al~~~~~~l~~e 173 (251)
T COG1028 149 ------GPPGQAAYAASKAALIGLTKALALE 173 (251)
T ss_pred ------CCCCcchHHHHHHHHHHHHHHHHHH
Confidence 111 134666777777777777733
|
|
| >PF02558 ApbA: Ketopantoate reductase PanE/ApbA; InterPro: IPR013332 ApbA, the ketopantoate reductase enzyme 1 | Back alignment and domain information |
|---|
Probab=96.83 E-value=0.0078 Score=49.13 Aligned_cols=116 Identities=16% Similarity=0.297 Sum_probs=66.4
Q ss_pred EEEEcCCChhHHHHHHHHHhcccCCCCCCeEEEEEecccchhhhhhhHhhhhhhcc----CCc----cceEEeCCHHHHh
Q 019990 8 VLVTGAAGQIGYALVPMIARGIMLGPDQPVILHMLDIEPAAEALNGVKMELIDAAF----PLL----KGVVATTDVVEAC 79 (332)
Q Consensus 8 I~VtGaaG~IGs~l~~~L~~~~~~~~~~~~~i~l~D~~~~~~~~~~~~~dl~~~~~----~~~----~~v~~~~~~~~a~ 79 (332)
|+|+| +|.||+.++..|.+.+. +|.++++.. .++. +..... ... ..........+..
T Consensus 1 I~I~G-~GaiG~~~a~~L~~~g~-------~V~l~~r~~---~~~~----~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~ 65 (151)
T PF02558_consen 1 ILIIG-AGAIGSLYAARLAQAGH-------DVTLVSRSP---RLEA----IKEQGLTITGPDGDETVQPPIVISAPSADA 65 (151)
T ss_dssp EEEES-TSHHHHHHHHHHHHTTC-------EEEEEESHH---HHHH----HHHHCEEEEETTEEEEEEEEEEESSHGHHH
T ss_pred CEEEC-cCHHHHHHHHHHHHCCC-------ceEEEEccc---cHHh----hhheeEEEEecccceecccccccCcchhcc
Confidence 78999 69999999999988775 899999753 1111 111100 110 0111112222456
Q ss_pred CCCcEEEEecCCCCCCCCChhHHHhhhHHHHHHHHHHHHhhcCCCcEEEEEeCChhhHHHHHHHHCCCCCCCcE-EEeec
Q 019990 80 KDVNIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEKHAAPNCKVLVVANPANTNALILKEFAPSIPAKNI-TCLTR 158 (332)
Q Consensus 80 ~~aDiVi~~ag~~~~~~~~~~~~~~~N~~~~~~i~~~i~~~~~~~~~viv~snp~~~~~~~~~~~~~~~~~~~i-~~~t~ 158 (332)
..+|+||++. |. .+ ..+.++.++.+..++..++..-|-.+.... +.+. +++.++ .+.+.
T Consensus 66 ~~~D~viv~v----Ka----~~--------~~~~l~~l~~~~~~~t~iv~~qNG~g~~~~-l~~~---~~~~~v~~g~~~ 125 (151)
T PF02558_consen 66 GPYDLVIVAV----KA----YQ--------LEQALQSLKPYLDPNTTIVSLQNGMGNEEV-LAEY---FPRPRVLGGVTT 125 (151)
T ss_dssp STESEEEE-S----SG----GG--------HHHHHHHHCTGEETTEEEEEESSSSSHHHH-HHCH---STGSGEEEEEEE
T ss_pred CCCcEEEEEe----cc----cc--------hHHHHHHHhhccCCCcEEEEEeCCCCcHHH-HHHH---cCCCcEEEEEEe
Confidence 8899999984 11 00 234566677776566677888887664433 3332 455564 44444
|
1.1.169 from EC of Salmonella typhimurium is required for the synthesis of thiamine via the alternative pyrimidine biosynthetic pathway []. Precursors to the pyrimidine moiety of thiamine are synthesized de novo by the purine biosynthetic pathway or the alternative pyrimidine biosynthetic (APB) pathway. The ApbA protein catalyzes the NADPH-specific reduction of ketopantoic acid to pantoic acid. This activity had previously been associated with the pantothenate biosynthetic gene panE []. ApbA and PanE are allelic [].; GO: 0008677 2-dehydropantoate 2-reductase activity, 0055114 oxidation-reduction process; PDB: 3EGO_B 3HWR_B 2QYT_A 1YJQ_A 1KS9_A 2OFP_A 1YON_A 3G17_E 3GHY_B 3I83_B .... |
| >COG1893 ApbA Ketopantoate reductase [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=96.81 E-value=0.015 Score=53.54 Aligned_cols=126 Identities=21% Similarity=0.256 Sum_probs=69.0
Q ss_pred cEEEEEcCCChhHHHHHHHHHhcccCCCCCCeEEEEEecccchhhhhhhHhhhhhhccCCccceEEeCCHHHHhCCCcEE
Q 019990 6 LRVLVTGAAGQIGYALVPMIARGIMLGPDQPVILHMLDIEPAAEALNGVKMELIDAAFPLLKGVVATTDVVEACKDVNIA 85 (332)
Q Consensus 6 ~kI~VtGaaG~IGs~l~~~L~~~~~~~~~~~~~i~l~D~~~~~~~~~~~~~dl~~~~~~~~~~v~~~~~~~~a~~~aDiV 85 (332)
|||+|+| +|.||+.++..|.+.+. .+.++.+....+.++..-..+.+..... ..........+....+|+|
T Consensus 1 mkI~IlG-aGAvG~l~g~~L~~~g~-------~V~~~~R~~~~~~l~~~GL~i~~~~~~~-~~~~~~~~~~~~~~~~Dlv 71 (307)
T COG1893 1 MKILILG-AGAIGSLLGARLAKAGH-------DVTLLVRSRRLEALKKKGLRIEDEGGNF-TTPVVAATDAEALGPADLV 71 (307)
T ss_pred CeEEEEC-CcHHHHHHHHHHHhCCC-------eEEEEecHHHHHHHHhCCeEEecCCCcc-ccccccccChhhcCCCCEE
Confidence 5899999 79999999999998773 5666665321112221111111110000 0011122233456789999
Q ss_pred EEecCCCCCCCCChhHHHhhhHHHHHHHHHHHHhhcCCCcEEEEEeCChhhHHHHHHHHCCCCCCCc-EEEeeccc
Q 019990 86 VMVGGFPRKEGMERKDVMSKNVSIYKAQASALEKHAAPNCKVLVVANPANTNALILKEFAPSIPAKN-ITCLTRLD 160 (332)
Q Consensus 86 i~~ag~~~~~~~~~~~~~~~N~~~~~~i~~~i~~~~~~~~~viv~snp~~~~~~~~~~~~~~~~~~~-i~~~t~l~ 160 (332)
|++. |..+ +.+.++.++.+..++..+++.-|-....- .+.+. ++.++ +.|.|..-
T Consensus 72 iv~v----Ka~q------------~~~al~~l~~~~~~~t~vl~lqNG~g~~e-~l~~~---~~~~~il~G~~~~~ 127 (307)
T COG1893 72 IVTV----KAYQ------------LEEALPSLAPLLGPNTVVLFLQNGLGHEE-ELRKI---LPKETVLGGVTTHG 127 (307)
T ss_pred EEEe----cccc------------HHHHHHHhhhcCCCCcEEEEEeCCCcHHH-HHHHh---CCcceEEEEEeeee
Confidence 9974 2111 23556666666656667777788766543 33432 45555 44555543
|
|
| >PRK07502 cyclohexadienyl dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=96.75 E-value=0.026 Score=52.02 Aligned_cols=73 Identities=26% Similarity=0.232 Sum_probs=47.6
Q ss_pred CCCCC-cEEEEEcCCChhHHHHHHHHHhcccCCCCCCeEEEEEecccchhhhhhhHhhhhhhccCCccceEEeCCHHHHh
Q 019990 1 MAKNP-LRVLVTGAAGQIGYALVPMIARGIMLGPDQPVILHMLDIEPAAEALNGVKMELIDAAFPLLKGVVATTDVVEAC 79 (332)
Q Consensus 1 m~~~~-~kI~VtGaaG~IGs~l~~~L~~~~~~~~~~~~~i~l~D~~~~~~~~~~~~~dl~~~~~~~~~~v~~~~~~~~a~ 79 (332)
|+..+ +||+|+| +|.+|..++..|...+.. .+|.++|++. +.... ..... . ......+..+++
T Consensus 1 ~~~~~~~~I~IIG-~G~mG~sla~~l~~~g~~-----~~V~~~dr~~--~~~~~----a~~~g---~-~~~~~~~~~~~~ 64 (307)
T PRK07502 1 MSAPLFDRVALIG-IGLIGSSLARAIRRLGLA-----GEIVGADRSA--ETRAR----ARELG---L-GDRVTTSAAEAV 64 (307)
T ss_pred CCccCCcEEEEEe-eCHHHHHHHHHHHhcCCC-----cEEEEEECCH--HHHHH----HHhCC---C-CceecCCHHHHh
Confidence 66543 7899999 799999999999887641 2789999853 12211 11110 0 011223556678
Q ss_pred CCCcEEEEec
Q 019990 80 KDVNIAVMVG 89 (332)
Q Consensus 80 ~~aDiVi~~a 89 (332)
+++|+||++.
T Consensus 65 ~~aDvViiav 74 (307)
T PRK07502 65 KGADLVILCV 74 (307)
T ss_pred cCCCEEEECC
Confidence 8999999875
|
|
| >PRK06928 pyrroline-5-carboxylate reductase; Reviewed | Back alignment and domain information |
|---|
Probab=96.74 E-value=0.027 Score=51.18 Aligned_cols=72 Identities=13% Similarity=0.143 Sum_probs=46.2
Q ss_pred CcEEEEEcCCChhHHHHHHHHHhcccCCCCCCeEEEEEecccchhhhhhhHhhhhhhccCCccceEEeCCHHHHhCCCcE
Q 019990 5 PLRVLVTGAAGQIGYALVPMIARGIMLGPDQPVILHMLDIEPAAEALNGVKMELIDAAFPLLKGVVATTDVVEACKDVNI 84 (332)
Q Consensus 5 ~~kI~VtGaaG~IGs~l~~~L~~~~~~~~~~~~~i~l~D~~~~~~~~~~~~~dl~~~~~~~~~~v~~~~~~~~a~~~aDi 84 (332)
|+||+|+| +|.+|++++..|.+.+... +.++.+++++.. +++. .+... ...+....+..+.++++|+
T Consensus 1 m~~I~iIG-~G~mG~ala~~L~~~g~~~---~~~V~~~~r~~~-~~~~----~l~~~----~~~~~~~~~~~e~~~~aDv 67 (277)
T PRK06928 1 MEKIGFIG-YGSMADMIATKLLETEVAT---PEEIILYSSSKN-EHFN----QLYDK----YPTVELADNEAEIFTKCDH 67 (277)
T ss_pred CCEEEEEC-ccHHHHHHHHHHHHCCCCC---cccEEEEeCCcH-HHHH----HHHHH----cCCeEEeCCHHHHHhhCCE
Confidence 35899999 7999999999998876321 137888887531 1121 11110 0123334566677889999
Q ss_pred EEEec
Q 019990 85 AVMVG 89 (332)
Q Consensus 85 Vi~~a 89 (332)
||++.
T Consensus 68 Vilav 72 (277)
T PRK06928 68 SFICV 72 (277)
T ss_pred EEEec
Confidence 99874
|
|
| >PLN00015 protochlorophyllide reductase | Back alignment and domain information |
|---|
Probab=96.72 E-value=0.0076 Score=55.50 Aligned_cols=115 Identities=12% Similarity=0.087 Sum_probs=63.4
Q ss_pred EEEcCCChhHHHHHHHHHhcc-cCCCCCCeEEEEEecccchhhhhhhHhhhhhhc--c-CCccceEEeCCHHHHh-----
Q 019990 9 LVTGAAGQIGYALVPMIARGI-MLGPDQPVILHMLDIEPAAEALNGVKMELIDAA--F-PLLKGVVATTDVVEAC----- 79 (332)
Q Consensus 9 ~VtGaaG~IGs~l~~~L~~~~-~~~~~~~~~i~l~D~~~~~~~~~~~~~dl~~~~--~-~~~~~v~~~~~~~~a~----- 79 (332)
+||||++.||.+++..|++.| . .|++.+++. +.+.....++.... . ....|+....++.+++
T Consensus 1 lITGas~GIG~aia~~l~~~G~~-------~V~~~~r~~--~~~~~~~~~l~~~~~~~~~~~~Dl~d~~~v~~~~~~~~~ 71 (308)
T PLN00015 1 IITGASSGLGLATAKALAETGKW-------HVVMACRDF--LKAERAAKSAGMPKDSYTVMHLDLASLDSVRQFVDNFRR 71 (308)
T ss_pred CEeCCCChHHHHHHHHHHHCCCC-------EEEEEeCCH--HHHHHHHHHhcCCCCeEEEEEecCCCHHHHHHHHHHHHh
Confidence 489999999999999999887 4 788887643 22322222222110 0 0112333322332222
Q ss_pred --CCCcEEEEecCCCCC----CCCChh---HHHhhhHHHH----HHHHHHHHhhcCCCcEEEEEeC
Q 019990 80 --KDVNIAVMVGGFPRK----EGMERK---DVMSKNVSIY----KAQASALEKHAAPNCKVLVVAN 132 (332)
Q Consensus 80 --~~aDiVi~~ag~~~~----~~~~~~---~~~~~N~~~~----~~i~~~i~~~~~~~~~viv~sn 132 (332)
...|++|+.||.... ...+.+ ..++.|+... +.+++.+.+.....++||++|+
T Consensus 72 ~~~~iD~lInnAG~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~lp~l~~~~~~~g~IV~vsS 137 (308)
T PLN00015 72 SGRPLDVLVCNAAVYLPTAKEPTFTADGFELSVGTNHLGHFLLSRLLLDDLKKSDYPSKRLIIVGS 137 (308)
T ss_pred cCCCCCEEEECCCcCCCCCCcCCCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhCCCCCCEEEEEec
Confidence 357999999987421 122322 3456676554 4555555543211357777765
|
|
| >PRK12549 shikimate 5-dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=96.71 E-value=0.012 Score=53.67 Aligned_cols=74 Identities=23% Similarity=0.225 Sum_probs=50.3
Q ss_pred CcEEEEEcCCChhHHHHHHHHHhcccCCCCCCeEEEEEecccchhhhhhhHhhhhhhccCCccceEEeCCHHHHhCCCcE
Q 019990 5 PLRVLVTGAAGQIGYALVPMIARGIMLGPDQPVILHMLDIEPAAEALNGVKMELIDAAFPLLKGVVATTDVVEACKDVNI 84 (332)
Q Consensus 5 ~~kI~VtGaaG~IGs~l~~~L~~~~~~~~~~~~~i~l~D~~~~~~~~~~~~~dl~~~~~~~~~~v~~~~~~~~a~~~aDi 84 (332)
.++|+|+| +|.+|++++..|...+. .+|.++|++. ++.+....++.+.. +. ..+....++.+.++++|+
T Consensus 127 ~k~vlIlG-aGGaaraia~aL~~~G~------~~I~I~nR~~--~ka~~la~~l~~~~-~~-~~~~~~~~~~~~~~~aDi 195 (284)
T PRK12549 127 LERVVQLG-AGGAGAAVAHALLTLGV------ERLTIFDVDP--ARAAALADELNARF-PA-ARATAGSDLAAALAAADG 195 (284)
T ss_pred CCEEEEEC-CcHHHHHHHHHHHHcCC------CEEEEECCCH--HHHHHHHHHHHhhC-CC-eEEEeccchHhhhCCCCE
Confidence 46899999 69999999999998775 2799999864 45555544443321 11 122222345566889999
Q ss_pred EEEec
Q 019990 85 AVMVG 89 (332)
Q Consensus 85 Vi~~a 89 (332)
||.+-
T Consensus 196 VInaT 200 (284)
T PRK12549 196 LVHAT 200 (284)
T ss_pred EEECC
Confidence 99983
|
|
| >KOG1200 consensus Mitochondrial/plastidial beta-ketoacyl-ACP reductase [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=96.71 E-value=0.013 Score=49.62 Aligned_cols=121 Identities=17% Similarity=0.178 Sum_probs=73.2
Q ss_pred cEEEEEcCCChhHHHHHHHHHhcccCCCCCCeEEEEEecccchhhhhhhHhhhhhhc--cCCccceEEeCC----HHHH-
Q 019990 6 LRVLVTGAAGQIGYALVPMIARGIMLGPDQPVILHMLDIEPAAEALNGVKMELIDAA--FPLLKGVVATTD----VVEA- 78 (332)
Q Consensus 6 ~kI~VtGaaG~IGs~l~~~L~~~~~~~~~~~~~i~l~D~~~~~~~~~~~~~dl~~~~--~~~~~~v~~~~~----~~~a- 78 (332)
+...|+||+.-||.+++..|...|. ++...|.+. ...+..+.+|.... ..+..|++...+ +++.
T Consensus 15 k~~~vtGg~sGIGrAia~~la~~Ga-------rv~v~dl~~--~~A~ata~~L~g~~~h~aF~~DVS~a~~v~~~l~e~~ 85 (256)
T KOG1200|consen 15 KVAAVTGGSSGIGRAIAQLLAKKGA-------RVAVADLDS--AAAEATAGDLGGYGDHSAFSCDVSKAHDVQNTLEEME 85 (256)
T ss_pred ceeEEecCCchHHHHHHHHHHhcCc-------EEEEeecch--hhHHHHHhhcCCCCccceeeeccCcHHHHHHHHHHHH
Confidence 4567899999999999999999885 888888864 23444455553311 112234443332 2222
Q ss_pred --hCCCcEEEEecCCCCCCC---CCh---hHHHhhhHHHHHHHHHHHHhh----cCCCcEEEEEeCChh
Q 019990 79 --CKDVNIAVMVGGFPRKEG---MER---KDVMSKNVSIYKAQASALEKH----AAPNCKVLVVANPAN 135 (332)
Q Consensus 79 --~~~aDiVi~~ag~~~~~~---~~~---~~~~~~N~~~~~~i~~~i~~~----~~~~~~viv~snp~~ 135 (332)
+--.+++|.+||+.+..- +.. ++.+..|+.++--+.+++.+. ......+|++|+-+.
T Consensus 86 k~~g~psvlVncAGItrD~~Llrmkq~qwd~vi~vNL~gvfl~tqaa~r~~~~~~~~~~sIiNvsSIVG 154 (256)
T KOG1200|consen 86 KSLGTPSVLVNCAGITRDGLLLRMKQEQWDSVIAVNLTGVFLVTQAAVRAMVMNQQQGLSIINVSSIVG 154 (256)
T ss_pred HhcCCCcEEEEcCccccccceeeccHHHHHHHHHhhchhhHHHHHHHHHHHHHhcCCCceEEeehhhhc
Confidence 234699999999865421 222 345677877765544444333 212346788886554
|
|
| >KOG1221 consensus Acyl-CoA reductase [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=96.70 E-value=0.0083 Score=57.79 Aligned_cols=112 Identities=17% Similarity=0.198 Sum_probs=64.0
Q ss_pred CCcEEEEEcCCChhHHHHHHHHHhcc-cCCCCCCeEEEEEecccch----hhhhhhHhh-----hhhh--c-----cCCc
Q 019990 4 NPLRVLVTGAAGQIGYALVPMIARGI-MLGPDQPVILHMLDIEPAA----EALNGVKME-----LIDA--A-----FPLL 66 (332)
Q Consensus 4 ~~~kI~VtGaaG~IGs~l~~~L~~~~-~~~~~~~~~i~l~D~~~~~----~~~~~~~~d-----l~~~--~-----~~~~ 66 (332)
+.+.|+||||+||+|.-++..|+..- -. .+|.|+=+.... +++.+...+ +... . .+..
T Consensus 11 ~~k~i~vTG~tGFlgKVliEklLr~~p~v-----~~IYlLiR~k~g~~~~~Rl~~~~~~~lF~~l~~~~p~~l~Kv~pi~ 85 (467)
T KOG1221|consen 11 KNKTIFVTGATGFLGKVLIEKLLRTTPDV-----KRIYLLIRAKKGKAAQERLRTELKDPLFEVLKEKKPEALEKVVPIA 85 (467)
T ss_pred CCCeEEEEcccchhHHHHHHHHHhcCcCc-----ceEEEEEecCCCCCHHHHHHHHHhhhHHHHHHhhCccceecceecc
Confidence 35789999999999999998887632 22 256665443221 122221111 0000 0 1122
Q ss_pred cceEE-----e-CCHHHHhCCCcEEEEecCCCCCCCCChhHHHhhhHHHHHHHHHHHHhhc
Q 019990 67 KGVVA-----T-TDVVEACKDVNIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEKHA 121 (332)
Q Consensus 67 ~~v~~-----~-~~~~~a~~~aDiVi~~ag~~~~~~~~~~~~~~~N~~~~~~i~~~i~~~~ 121 (332)
+|+.. . .|...-.++.|+|||+|+..+-. ++-..-+.-|..+++.+.+.+++..
T Consensus 86 GDi~~~~LGis~~D~~~l~~eV~ivih~AAtvrFd-e~l~~al~iNt~Gt~~~l~lak~~~ 145 (467)
T KOG1221|consen 86 GDISEPDLGISESDLRTLADEVNIVIHSAATVRFD-EPLDVALGINTRGTRNVLQLAKEMV 145 (467)
T ss_pred ccccCcccCCChHHHHHHHhcCCEEEEeeeeeccc-hhhhhhhhhhhHhHHHHHHHHHHhh
Confidence 33322 1 34444467889999998765432 2222235668899999888888763
|
|
| >PRK05671 aspartate-semialdehyde dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=96.68 E-value=0.0058 Score=57.00 Aligned_cols=74 Identities=27% Similarity=0.417 Sum_probs=43.8
Q ss_pred CCCCCcEEEEEcCCChhHHHHHHHHHhcccCCCCCCeEEEEEecccchhhhhhhHhhhhhhccCCccceEEe-CCHHHHh
Q 019990 1 MAKNPLRVLVTGAAGQIGYALVPMIARGIMLGPDQPVILHMLDIEPAAEALNGVKMELIDAAFPLLKGVVAT-TDVVEAC 79 (332)
Q Consensus 1 m~~~~~kI~VtGaaG~IGs~l~~~L~~~~~~~~~~~~~i~l~D~~~~~~~~~~~~~dl~~~~~~~~~~v~~~-~~~~~a~ 79 (332)
|+ +|+||+|+||+|++|..++..|.+.++ +..+++.+.... ..|....+.. .++... .+. ..+
T Consensus 1 m~-~~~~IaIvGATG~vG~eLlrlL~~~~h----P~~~l~~v~s~~----~aG~~l~~~~------~~l~~~~~~~-~~~ 64 (336)
T PRK05671 1 MS-QPLDIAVVGATGTVGEALVQILEERDF----PVGTLHLLASSE----SAGHSVPFAG------KNLRVREVDS-FDF 64 (336)
T ss_pred CC-CCCEEEEEccCCHHHHHHHHHHhhCCC----CceEEEEEECcc----cCCCeeccCC------cceEEeeCCh-HHh
Confidence 64 568999999999999999999986543 113666664422 1122222111 122221 122 236
Q ss_pred CCCcEEEEecC
Q 019990 80 KDVNIAVMVGG 90 (332)
Q Consensus 80 ~~aDiVi~~ag 90 (332)
+++|+||++.+
T Consensus 65 ~~vD~vFla~p 75 (336)
T PRK05671 65 SQVQLAFFAAG 75 (336)
T ss_pred cCCCEEEEcCC
Confidence 88999988653
|
|
| >PF03435 Saccharop_dh: Saccharopine dehydrogenase ; InterPro: IPR005097 This entry represents saccharopine dehydrogenase and homospermidine synthase | Back alignment and domain information |
|---|
Probab=96.67 E-value=0.0016 Score=62.03 Aligned_cols=77 Identities=21% Similarity=0.317 Sum_probs=45.2
Q ss_pred EEEEcCCChhHHHHHHHHHhcccCCCCCCeEEEEEecccchhhhhhhHhhhhhhccC-CccceEEeCCHHHHhCCCcEEE
Q 019990 8 VLVTGAAGQIGYALVPMIARGIMLGPDQPVILHMLDIEPAAEALNGVKMELIDAAFP-LLKGVVATTDVVEACKDVNIAV 86 (332)
Q Consensus 8 I~VtGaaG~IGs~l~~~L~~~~~~~~~~~~~i~l~D~~~~~~~~~~~~~dl~~~~~~-~~~~v~~~~~~~~a~~~aDiVi 86 (332)
|+|+|| |++|+.++..|.+.... .++.+.|++. ++++.....+....+. ..-++....++.+.++++|+||
T Consensus 1 IlvlG~-G~vG~~~~~~L~~~~~~-----~~v~va~r~~--~~~~~~~~~~~~~~~~~~~~d~~~~~~l~~~~~~~dvVi 72 (386)
T PF03435_consen 1 ILVLGA-GRVGSAIARLLARRGPF-----EEVTVADRNP--EKAERLAEKLLGDRVEAVQVDVNDPESLAELLRGCDVVI 72 (386)
T ss_dssp EEEE---SHHHHHHHHHHHCTTCE------EEEEEESSH--HHHHHHHT--TTTTEEEEE--TTTHHHHHHHHTTSSEEE
T ss_pred CEEEcC-cHHHHHHHHHHhcCCCC-----CcEEEEECCH--HHHHHHHhhccccceeEEEEecCCHHHHHHHHhcCCEEE
Confidence 789997 99999999999886531 1799999864 3333332221111110 1123333334667789999999
Q ss_pred EecCCC
Q 019990 87 MVGGFP 92 (332)
Q Consensus 87 ~~ag~~ 92 (332)
+++|..
T Consensus 73 n~~gp~ 78 (386)
T PF03435_consen 73 NCAGPF 78 (386)
T ss_dssp E-SSGG
T ss_pred ECCccc
Confidence 998753
|
Saccharopine reductase (SR) 1.5.1.10 from EC) catalyses the condensation of l-alpha-aminoadipate-delta-semialdehyde (AASA) with l-glutamate to give an imine, which is reduced by NADPH to give saccharopine []. In some organisms this enzyme is found as a bifunctional polypeptide with lysine ketoglutarate reductase (PF). Saccharopine dehydrogenase can also function as a saccharopine reductase. Homospermidine synthase proteins (2.5.1.44 from EC). Homospermidine synthase (HSS) catalyses the synthesis of the polyamine homospermidine from 2 mol putrescine in an NAD+-dependent reaction [].; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2AXQ_A 1E5Q_A 1FF9_A 1E5L_A 2PH5_A 3IC5_A 3ABI_A. |
| >PRK07634 pyrroline-5-carboxylate reductase; Reviewed | Back alignment and domain information |
|---|
Probab=96.66 E-value=0.011 Score=52.50 Aligned_cols=72 Identities=21% Similarity=0.206 Sum_probs=45.1
Q ss_pred CCcEEEEEcCCChhHHHHHHHHHhcccCCCCCCeEEEEEecccchhhhhhhHhhhhhhccCCccceEEeCCHHHHhCCCc
Q 019990 4 NPLRVLVTGAAGQIGYALVPMIARGIMLGPDQPVILHMLDIEPAAEALNGVKMELIDAAFPLLKGVVATTDVVEACKDVN 83 (332)
Q Consensus 4 ~~~kI~VtGaaG~IGs~l~~~L~~~~~~~~~~~~~i~l~D~~~~~~~~~~~~~dl~~~~~~~~~~v~~~~~~~~a~~~aD 83 (332)
.++||+|+| +|.+|++++..|+..+... ..++.+++++. .++++ ++.+. + ++....+..+.++++|
T Consensus 3 ~~~kI~iIG-~G~mg~ala~~l~~~~~~~---~~~i~~~~~~~-~~~~~----~~~~~---~--~~~~~~~~~~~~~~~D 68 (245)
T PRK07634 3 KKHRILFIG-AGRMAEAIFSGLLKTSKEY---IEEIIVSNRSN-VEKLD----QLQAR---Y--NVSTTTDWKQHVTSVD 68 (245)
T ss_pred CCCeEEEEC-cCHHHHHHHHHHHhCCCCC---cCeEEEECCCC-HHHHH----HHHHH---c--CcEEeCChHHHHhcCC
Confidence 457999999 7999999999998765311 11466776532 12222 22111 1 1233456677789999
Q ss_pred EEEEec
Q 019990 84 IAVMVG 89 (332)
Q Consensus 84 iVi~~a 89 (332)
+||++.
T Consensus 69 iViiav 74 (245)
T PRK07634 69 TIVLAM 74 (245)
T ss_pred EEEEec
Confidence 999873
|
|
| >KOG1208 consensus Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=96.60 E-value=0.025 Score=52.22 Aligned_cols=159 Identities=15% Similarity=0.119 Sum_probs=94.0
Q ss_pred CcEEEEEcCCChhHHHHHHHHHhcccCCCCCCeEEEEEecccchhhhhhhHhhhhhhccC-----CccceEEeCCHH---
Q 019990 5 PLRVLVTGAAGQIGYALVPMIARGIMLGPDQPVILHMLDIEPAAEALNGVKMELIDAAFP-----LLKGVVATTDVV--- 76 (332)
Q Consensus 5 ~~kI~VtGaaG~IGs~l~~~L~~~~~~~~~~~~~i~l~D~~~~~~~~~~~~~dl~~~~~~-----~~~~v~~~~~~~--- 76 (332)
.+.+.||||+..||...+..|+..|. +|++..++. ++....+.++...... ...|+.....+.
T Consensus 35 ~~~~vVTGansGIG~eta~~La~~Ga-------~Vv~~~R~~--~~~~~~~~~i~~~~~~~~i~~~~lDLssl~SV~~fa 105 (314)
T KOG1208|consen 35 GKVALVTGATSGIGFETARELALRGA-------HVVLACRNE--ERGEEAKEQIQKGKANQKIRVIQLDLSSLKSVRKFA 105 (314)
T ss_pred CcEEEEECCCCchHHHHHHHHHhCCC-------EEEEEeCCH--HHHHHHHHHHHhcCCCCceEEEECCCCCHHHHHHHH
Confidence 35688999999999999999999884 788888754 3344444455431100 112332222221
Q ss_pred ----HHhCCCcEEEEecCCCCCCCC-Ch---hHHHhhhH----HHHHHHHHHHHhhcCCCcEEEEEeCChh----hHHHH
Q 019990 77 ----EACKDVNIAVMVGGFPRKEGM-ER---KDVMSKNV----SIYKAQASALEKHAAPNCKVLVVANPAN----TNALI 140 (332)
Q Consensus 77 ----~a~~~aDiVi~~ag~~~~~~~-~~---~~~~~~N~----~~~~~i~~~i~~~~~~~~~viv~snp~~----~~~~~ 140 (332)
+....-|+.|.-||+...+.. +. +..++.|- -.++.+++.+++.. | ++||++|+-.. .+..+
T Consensus 106 ~~~~~~~~~ldvLInNAGV~~~~~~~t~DG~E~~~~tN~lg~flLt~lLlp~lk~s~-~-~RIV~vsS~~~~~~~~~~~l 183 (314)
T KOG1208|consen 106 EEFKKKEGPLDVLINNAGVMAPPFSLTKDGLELTFATNYLGHFLLTELLLPLLKRSA-P-SRIVNVSSILGGGKIDLKDL 183 (314)
T ss_pred HHHHhcCCCccEEEeCcccccCCcccCccchhheehhhhHHHHHHHHHHHHHHhhCC-C-CCEEEEcCccccCccchhhc
Confidence 223367999999998433221 11 12344553 34466777777764 4 78888886321 11111
Q ss_pred HHHHCCCCCCCcEEEeecccHHHHHHHHHHHcCC
Q 019990 141 LKEFAPSIPAKNITCLTRLDHNRAMGQISERLKV 174 (332)
Q Consensus 141 ~~~~~~~~~~~~i~~~t~l~~~r~~~~~a~~~~v 174 (332)
..+....+...+.|+.+++....+...+++++.-
T Consensus 184 ~~~~~~~~~~~~~Y~~SKla~~l~~~eL~k~l~~ 217 (314)
T KOG1208|consen 184 SGEKAKLYSSDAAYALSKLANVLLANELAKRLKK 217 (314)
T ss_pred cchhccCccchhHHHHhHHHHHHHHHHHHHHhhc
Confidence 1221111444445788899888889999998764
|
|
| >PRK06728 aspartate-semialdehyde dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=96.59 E-value=0.0062 Score=56.85 Aligned_cols=77 Identities=17% Similarity=0.361 Sum_probs=47.7
Q ss_pred CCCCCcEEEEEcCCChhHHHHHHHHHhcccCCCCCCeEEEEEecccchhhhhhhHhhhhhhccCCccceEEeCCHHHHhC
Q 019990 1 MAKNPLRVLVTGAAGQIGYALVPMIARGIMLGPDQPVILHMLDIEPAAEALNGVKMELIDAAFPLLKGVVATTDVVEACK 80 (332)
Q Consensus 1 m~~~~~kI~VtGaaG~IGs~l~~~L~~~~~~~~~~~~~i~l~D~~~~~~~~~~~~~dl~~~~~~~~~~v~~~~~~~~a~~ 80 (332)
|+.+.+||+|+||+|.+|+.++..|.....+.. .++.++.... ..|....+. ..++.......+.++
T Consensus 1 ~~~~~~~VaIvGATG~vG~ell~lL~~h~~f~v---~~l~~~aS~~----saGk~~~~~------~~~l~v~~~~~~~~~ 67 (347)
T PRK06728 1 MSEKGYHVAVVGATGAVGQKIIELLEKETKFNI---AEVTLLSSKR----SAGKTVQFK------GREIIIQEAKINSFE 67 (347)
T ss_pred CCCCCCEEEEEeCCCHHHHHHHHHHHHCCCCCc---ccEEEEECcc----cCCCCeeeC------CcceEEEeCCHHHhc
Confidence 777888999999999999999998886444321 2477776432 223222111 112332211124568
Q ss_pred CCcEEEEecC
Q 019990 81 DVNIAVMVGG 90 (332)
Q Consensus 81 ~aDiVi~~ag 90 (332)
++|+||++++
T Consensus 68 ~~Divf~a~~ 77 (347)
T PRK06728 68 GVDIAFFSAG 77 (347)
T ss_pred CCCEEEECCC
Confidence 8999998764
|
|
| >PRK07680 late competence protein ComER; Validated | Back alignment and domain information |
|---|
Probab=96.57 E-value=0.036 Score=50.18 Aligned_cols=70 Identities=13% Similarity=0.286 Sum_probs=46.4
Q ss_pred cEEEEEcCCChhHHHHHHHHHhcccCCCCCCeEEEEEecccchhhhhhhHhhhhhhccCCccceEEeCCHHHHhCCCcEE
Q 019990 6 LRVLVTGAAGQIGYALVPMIARGIMLGPDQPVILHMLDIEPAAEALNGVKMELIDAAFPLLKGVVATTDVVEACKDVNIA 85 (332)
Q Consensus 6 ~kI~VtGaaG~IGs~l~~~L~~~~~~~~~~~~~i~l~D~~~~~~~~~~~~~dl~~~~~~~~~~v~~~~~~~~a~~~aDiV 85 (332)
|||+|+| +|.+|++++..|.+.+... +.++.++|++. +.... +.+. . ..+....+..+.+.++|+|
T Consensus 1 m~I~iIG-~G~mG~ala~~L~~~g~~~---~~~v~v~~r~~--~~~~~----~~~~-~---~g~~~~~~~~~~~~~aDiV 66 (273)
T PRK07680 1 MNIGFIG-TGNMGTILIEAFLESGAVK---PSQLTITNRTP--AKAYH----IKER-Y---PGIHVAKTIEEVISQSDLI 66 (273)
T ss_pred CEEEEEC-ccHHHHHHHHHHHHCCCCC---cceEEEECCCH--HHHHH----HHHH-c---CCeEEECCHHHHHHhCCEE
Confidence 4799999 7999999999998876421 13688998853 22221 2110 0 1233445666778899999
Q ss_pred EEec
Q 019990 86 VMVG 89 (332)
Q Consensus 86 i~~a 89 (332)
|++.
T Consensus 67 ilav 70 (273)
T PRK07680 67 FICV 70 (273)
T ss_pred EEec
Confidence 9875
|
|
| >PRK07679 pyrroline-5-carboxylate reductase; Reviewed | Back alignment and domain information |
|---|
Probab=96.55 E-value=0.012 Score=53.39 Aligned_cols=70 Identities=21% Similarity=0.234 Sum_probs=46.1
Q ss_pred cEEEEEcCCChhHHHHHHHHHhcccCCCCCCeEEEEEecccchhhhhhhHhhhhhhccCCccceEEeCCHHHHhCCCcEE
Q 019990 6 LRVLVTGAAGQIGYALVPMIARGIMLGPDQPVILHMLDIEPAAEALNGVKMELIDAAFPLLKGVVATTDVVEACKDVNIA 85 (332)
Q Consensus 6 ~kI~VtGaaG~IGs~l~~~L~~~~~~~~~~~~~i~l~D~~~~~~~~~~~~~dl~~~~~~~~~~v~~~~~~~~a~~~aDiV 85 (332)
|||+++| +|.+|++++..|+..+... +.++.++|++.. +++. ++... + .+....+..+.++++|+|
T Consensus 4 mkI~~IG-~G~mG~aia~~l~~~g~~~---~~~v~v~~r~~~-~~~~----~l~~~---~--g~~~~~~~~e~~~~aDvV 69 (279)
T PRK07679 4 QNISFLG-AGSIAEAIIGGLLHANVVK---GEQITVSNRSNE-TRLQ----ELHQK---Y--GVKGTHNKKELLTDANIL 69 (279)
T ss_pred CEEEEEC-ccHHHHHHHHHHHHCCCCC---cceEEEECCCCH-HHHH----HHHHh---c--CceEeCCHHHHHhcCCEE
Confidence 5999999 7999999999998876221 237888887431 1222 22111 0 133345666778899999
Q ss_pred EEec
Q 019990 86 VMVG 89 (332)
Q Consensus 86 i~~a 89 (332)
|++.
T Consensus 70 ilav 73 (279)
T PRK07679 70 FLAM 73 (279)
T ss_pred EEEe
Confidence 9874
|
|
| >COG0677 WecC UDP-N-acetyl-D-mannosaminuronate dehydrogenase [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Probab=96.54 E-value=0.055 Score=50.75 Aligned_cols=109 Identities=18% Similarity=0.189 Sum_probs=67.9
Q ss_pred CcEEEEEcCCChhHHHHHHHHHhcccCCCCCCeEEEEEecccchhhhhhhHhhhhhhcc--------------CCccceE
Q 019990 5 PLRVLVTGAAGQIGYALVPMIARGIMLGPDQPVILHMLDIEPAAEALNGVKMELIDAAF--------------PLLKGVV 70 (332)
Q Consensus 5 ~~kI~VtGaaG~IGs~l~~~L~~~~~~~~~~~~~i~l~D~~~~~~~~~~~~~dl~~~~~--------------~~~~~v~ 70 (332)
.++|+|+| -|+||..++-.+...|. .+.-+|++.. +.. .++.... ...+.++
T Consensus 9 ~~~I~ViG-LGYVGLPlA~~fA~~G~-------~ViG~DIn~~--~Vd----~ln~G~~~i~e~~~~~~v~~~v~~g~lr 74 (436)
T COG0677 9 SATIGVIG-LGYVGLPLAAAFASAGF-------KVIGVDINQK--KVD----KLNRGESYIEEPDLDEVVKEAVESGKLR 74 (436)
T ss_pred ceEEEEEc-cccccHHHHHHHHHcCC-------ceEeEeCCHH--HHH----HHhCCcceeecCcHHHHHHHHHhcCCce
Confidence 47999999 99999999999999886 7899998641 221 1111100 1124577
Q ss_pred EeCCHHHHhCCCcEEEEecCCCCCCCCChhHHHhhhHHHHHHHHHHHHhhcCCCcEEEE-EeCCh
Q 019990 71 ATTDVVEACKDVNIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEKHAAPNCKVLV-VANPA 134 (332)
Q Consensus 71 ~~~~~~~a~~~aDiVi~~ag~~~~~~~~~~~~~~~N~~~~~~i~~~i~~~~~~~~~viv-~snp~ 134 (332)
.+++.. .++.||+++++.-.|.+.. -+..+..+.+-++.+..+-.++-.+|+ .|.|.
T Consensus 75 aTtd~~-~l~~~dv~iI~VPTPl~~~------~~pDls~v~~aa~sIa~~L~kG~LVIlEST~~P 132 (436)
T COG0677 75 ATTDPE-ELKECDVFIICVPTPLKKY------REPDLSYVESAARSIAPVLKKGDLVILESTTPP 132 (436)
T ss_pred EecChh-hcccCCEEEEEecCCcCCC------CCCChHHHHHHHHHHHHhcCCCCEEEEecCCCC
Confidence 777764 4779999999976554321 122344555566666666433333444 44554
|
|
| >PRK11880 pyrroline-5-carboxylate reductase; Reviewed | Back alignment and domain information |
|---|
Probab=96.53 E-value=0.0094 Score=53.70 Aligned_cols=69 Identities=22% Similarity=0.274 Sum_probs=45.6
Q ss_pred CcEEEEEcCCChhHHHHHHHHHhcccCCCCCCeEEEEEecccchhhhhhhHhhhhhhccCCccceEEeCCHHHHhCCCcE
Q 019990 5 PLRVLVTGAAGQIGYALVPMIARGIMLGPDQPVILHMLDIEPAAEALNGVKMELIDAAFPLLKGVVATTDVVEACKDVNI 84 (332)
Q Consensus 5 ~~kI~VtGaaG~IGs~l~~~L~~~~~~~~~~~~~i~l~D~~~~~~~~~~~~~dl~~~~~~~~~~v~~~~~~~~a~~~aDi 84 (332)
|+||+|+| +|.+|+.++..|.+.+.. ..++.++|++. +..+ .+.+. + .+....+..+.+.++|+
T Consensus 2 mm~I~iIG-~G~mG~~la~~l~~~g~~----~~~v~v~~r~~--~~~~----~~~~~---~--g~~~~~~~~~~~~~adv 65 (267)
T PRK11880 2 MKKIGFIG-GGNMASAIIGGLLASGVP----AKDIIVSDPSP--EKRA----ALAEE---Y--GVRAATDNQEAAQEADV 65 (267)
T ss_pred CCEEEEEe-chHHHHHHHHHHHhCCCC----cceEEEEcCCH--HHHH----HHHHh---c--CCeecCChHHHHhcCCE
Confidence 57899999 799999999999877631 13788999753 2222 12111 0 12233455666789999
Q ss_pred EEEec
Q 019990 85 AVMVG 89 (332)
Q Consensus 85 Vi~~a 89 (332)
||++.
T Consensus 66 Vil~v 70 (267)
T PRK11880 66 VVLAV 70 (267)
T ss_pred EEEEc
Confidence 99874
|
|
| >PRK07417 arogenate dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=96.53 E-value=0.024 Score=51.52 Aligned_cols=65 Identities=18% Similarity=0.197 Sum_probs=42.6
Q ss_pred cEEEEEcCCChhHHHHHHHHHhcccCCCCCCeEEEEEecccchhhhhhhHhhhhhhccCCccceEEeCCHHHHhCCCcEE
Q 019990 6 LRVLVTGAAGQIGYALVPMIARGIMLGPDQPVILHMLDIEPAAEALNGVKMELIDAAFPLLKGVVATTDVVEACKDVNIA 85 (332)
Q Consensus 6 ~kI~VtGaaG~IGs~l~~~L~~~~~~~~~~~~~i~l~D~~~~~~~~~~~~~dl~~~~~~~~~~v~~~~~~~~a~~~aDiV 85 (332)
|||+|+| .|.+|..++..|.+.++ +|.++|++. +.+.. +.... ..+ ....+. ++++++|+|
T Consensus 1 m~I~IIG-~G~mG~sla~~L~~~g~-------~V~~~d~~~--~~~~~----a~~~g---~~~-~~~~~~-~~~~~aDlV 61 (279)
T PRK07417 1 MKIGIVG-LGLIGGSLGLDLRSLGH-------TVYGVSRRE--STCER----AIERG---LVD-EASTDL-SLLKDCDLV 61 (279)
T ss_pred CeEEEEe-ecHHHHHHHHHHHHCCC-------EEEEEECCH--HHHHH----HHHCC---Ccc-cccCCH-hHhcCCCEE
Confidence 4799999 79999999999988775 899999853 12211 11110 000 111233 467899999
Q ss_pred EEec
Q 019990 86 VMVG 89 (332)
Q Consensus 86 i~~a 89 (332)
|++.
T Consensus 62 ilav 65 (279)
T PRK07417 62 ILAL 65 (279)
T ss_pred EEcC
Confidence 9874
|
|
| >COG0569 TrkA K+ transport systems, NAD-binding component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=96.45 E-value=0.005 Score=54.15 Aligned_cols=73 Identities=15% Similarity=0.299 Sum_probs=45.9
Q ss_pred cEEEEEcCCChhHHHHHHHHHhcccCCCCCCeEEEEEecccchhhhhhhHhhhhhhccCCccceEEeCCHHHH-hCCCcE
Q 019990 6 LRVLVTGAAGQIGYALVPMIARGIMLGPDQPVILHMLDIEPAAEALNGVKMELIDAAFPLLKGVVATTDVVEA-CKDVNI 84 (332)
Q Consensus 6 ~kI~VtGaaG~IGs~l~~~L~~~~~~~~~~~~~i~l~D~~~~~~~~~~~~~dl~~~~~~~~~~v~~~~~~~~a-~~~aDi 84 (332)
|+++|+| +|.+|++++..|.+.|+ +++++|.++ ++......+-.+.. ....+-+...-+.++ +.++|+
T Consensus 1 m~iiIiG-~G~vG~~va~~L~~~g~-------~Vv~Id~d~--~~~~~~~~~~~~~~-~v~gd~t~~~~L~~agi~~aD~ 69 (225)
T COG0569 1 MKIIIIG-AGRVGRSVARELSEEGH-------NVVLIDRDE--ERVEEFLADELDTH-VVIGDATDEDVLEEAGIDDADA 69 (225)
T ss_pred CEEEEEC-CcHHHHHHHHHHHhCCC-------ceEEEEcCH--HHHHHHhhhhcceE-EEEecCCCHHHHHhcCCCcCCE
Confidence 5899999 79999999999999886 899999864 23322111111110 011222223335555 678999
Q ss_pred EEEec
Q 019990 85 AVMVG 89 (332)
Q Consensus 85 Vi~~a 89 (332)
++.+-
T Consensus 70 vva~t 74 (225)
T COG0569 70 VVAAT 74 (225)
T ss_pred EEEee
Confidence 98864
|
|
| >PRK15461 NADH-dependent gamma-hydroxybutyrate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=96.42 E-value=0.012 Score=54.01 Aligned_cols=64 Identities=19% Similarity=0.398 Sum_probs=45.9
Q ss_pred cEEEEEcCCChhHHHHHHHHHhcccCCCCCCeEEEEEecccchhhhhhhHhhhhhhccCCccceEEeCCHHHHhCCCcEE
Q 019990 6 LRVLVTGAAGQIGYALVPMIARGIMLGPDQPVILHMLDIEPAAEALNGVKMELIDAAFPLLKGVVATTDVVEACKDVNIA 85 (332)
Q Consensus 6 ~kI~VtGaaG~IGs~l~~~L~~~~~~~~~~~~~i~l~D~~~~~~~~~~~~~dl~~~~~~~~~~v~~~~~~~~a~~~aDiV 85 (332)
+||+|+| .|.+|..++..|++.++ +|.++|++. +... ++... ......+..++++++|+|
T Consensus 2 ~~Ig~IG-lG~mG~~mA~~l~~~G~-------~V~v~d~~~--~~~~----~~~~~------g~~~~~s~~~~~~~aDvV 61 (296)
T PRK15461 2 AAIAFIG-LGQMGSPMASNLLKQGH-------QLQVFDVNP--QAVD----ALVDK------GATPAASPAQAAAGAEFV 61 (296)
T ss_pred CeEEEEe-eCHHHHHHHHHHHHCCC-------eEEEEcCCH--HHHH----HHHHc------CCcccCCHHHHHhcCCEE
Confidence 4899999 79999999999998875 899999864 2222 22211 122234566778999999
Q ss_pred EEec
Q 019990 86 VMVG 89 (332)
Q Consensus 86 i~~a 89 (332)
|++.
T Consensus 62 i~~v 65 (296)
T PRK15461 62 ITML 65 (296)
T ss_pred EEec
Confidence 9874
|
|
| >PLN02688 pyrroline-5-carboxylate reductase | Back alignment and domain information |
|---|
Probab=96.41 E-value=0.064 Score=48.20 Aligned_cols=68 Identities=19% Similarity=0.290 Sum_probs=45.5
Q ss_pred cEEEEEcCCChhHHHHHHHHHhcccCCCCCCeEEEEE-ecccchhhhhhhHhhhhhhccCCccceEEeCCHHHHhCCCcE
Q 019990 6 LRVLVTGAAGQIGYALVPMIARGIMLGPDQPVILHML-DIEPAAEALNGVKMELIDAAFPLLKGVVATTDVVEACKDVNI 84 (332)
Q Consensus 6 ~kI~VtGaaG~IGs~l~~~L~~~~~~~~~~~~~i~l~-D~~~~~~~~~~~~~dl~~~~~~~~~~v~~~~~~~~a~~~aDi 84 (332)
|||+++| +|.+|++++..|++.++.. +.+++++ |++. ++.. .+... .+....+..++++++|+
T Consensus 1 ~kI~~IG-~G~mG~a~a~~L~~~g~~~---~~~i~v~~~r~~--~~~~----~~~~~------g~~~~~~~~e~~~~aDv 64 (266)
T PLN02688 1 FRVGFIG-AGKMAEAIARGLVASGVVP---PSRISTADDSNP--ARRD----VFQSL------GVKTAASNTEVVKSSDV 64 (266)
T ss_pred CeEEEEC-CcHHHHHHHHHHHHCCCCC---cceEEEEeCCCH--HHHH----HHHHc------CCEEeCChHHHHhcCCE
Confidence 5799999 8999999999999876421 2368888 6542 2221 12211 23334556677889999
Q ss_pred EEEec
Q 019990 85 AVMVG 89 (332)
Q Consensus 85 Vi~~a 89 (332)
||++.
T Consensus 65 Vil~v 69 (266)
T PLN02688 65 IILAV 69 (266)
T ss_pred EEEEE
Confidence 99885
|
|
| >PRK12480 D-lactate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=96.40 E-value=0.047 Score=50.89 Aligned_cols=61 Identities=25% Similarity=0.291 Sum_probs=44.8
Q ss_pred CcEEEEEcCCChhHHHHHHHHHhcccCCCCCCeEEEEEecccchhhhhhhHhhhhhhccCCccceEEeCCHHHHhCCCcE
Q 019990 5 PLRVLVTGAAGQIGYALVPMIARGIMLGPDQPVILHMLDIEPAAEALNGVKMELIDAAFPLLKGVVATTDVVEACKDVNI 84 (332)
Q Consensus 5 ~~kI~VtGaaG~IGs~l~~~L~~~~~~~~~~~~~i~l~D~~~~~~~~~~~~~dl~~~~~~~~~~v~~~~~~~~a~~~aDi 84 (332)
.++|+|+| .|.||+.++..|...|. +|..+|+... .. .+. .....++.+++++||+
T Consensus 146 g~~VgIIG-~G~IG~~vA~~L~~~G~-------~V~~~d~~~~--~~----~~~----------~~~~~~l~ell~~aDi 201 (330)
T PRK12480 146 NMTVAIIG-TGRIGAATAKIYAGFGA-------TITAYDAYPN--KD----LDF----------LTYKDSVKEAIKDADI 201 (330)
T ss_pred CCEEEEEC-CCHHHHHHHHHHHhCCC-------EEEEEeCChh--Hh----hhh----------hhccCCHHHHHhcCCE
Confidence 46899999 79999999999987765 8999997531 10 000 1113467888999999
Q ss_pred EEEec
Q 019990 85 AVMVG 89 (332)
Q Consensus 85 Vi~~a 89 (332)
|+.+.
T Consensus 202 Vil~l 206 (330)
T PRK12480 202 ISLHV 206 (330)
T ss_pred EEEeC
Confidence 98874
|
|
| >KOG2865 consensus NADH:ubiquinone oxidoreductase, NDUFA9/39kDa subunit [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=96.40 E-value=0.006 Score=54.55 Aligned_cols=113 Identities=15% Similarity=0.073 Sum_probs=70.4
Q ss_pred EEEEEcCCChhHHHHHHHHHhcccCCCCCCeEEEE-EecccchhhhhhhHhhhhhhccCCccceEEeCCHHHHhCCCcEE
Q 019990 7 RVLVTGAAGQIGYALVPMIARGIMLGPDQPVILHM-LDIEPAAEALNGVKMELIDAAFPLLKGVVATTDVVEACKDVNIA 85 (332)
Q Consensus 7 kI~VtGaaG~IGs~l~~~L~~~~~~~~~~~~~i~l-~D~~~~~~~~~~~~~dl~~~~~~~~~~v~~~~~~~~a~~~aDiV 85 (332)
-..|.||+||+|..++..|...|- .+.+ +.-++..-+-....-||-+.. +..-+..+.+++.++++.+.+|
T Consensus 63 VaTVFGAtGFlGryvvnklak~GS-------QviiPyR~d~~~~r~lkvmGdLGQvl-~~~fd~~DedSIr~vvk~sNVV 134 (391)
T KOG2865|consen 63 VATVFGATGFLGRYVVNKLAKMGS-------QVIIPYRGDEYDPRHLKVMGDLGQVL-FMKFDLRDEDSIRAVVKHSNVV 134 (391)
T ss_pred EEEEecccccccHHHHHHHhhcCC-------eEEEeccCCccchhheeeccccccee-eeccCCCCHHHHHHHHHhCcEE
Confidence 357899999999999999988762 2222 221111101111222333221 1224566666788889999999
Q ss_pred EEecCCCCCCCCChhHHHhhhHHHHHHHHHHHHhhcCCCcEEEEEe
Q 019990 86 VMVGGFPRKEGMERKDVMSKNVSIYKAQASALEKHAAPNCKVLVVA 131 (332)
Q Consensus 86 i~~ag~~~~~~~~~~~~~~~N~~~~~~i~~~i~~~~~~~~~viv~s 131 (332)
|.+.|-.... -..++.+.|..+.+.++..|++.+ -. ++|-+|
T Consensus 135 INLIGrd~eT--knf~f~Dvn~~~aerlAricke~G-Ve-rfIhvS 176 (391)
T KOG2865|consen 135 INLIGRDYET--KNFSFEDVNVHIAERLARICKEAG-VE-RFIHVS 176 (391)
T ss_pred EEeecccccc--CCcccccccchHHHHHHHHHHhhC-hh-heeehh
Confidence 9998853221 123466788899999999998876 22 566655
|
|
| >PF10727 Rossmann-like: Rossmann-like domain; InterPro: IPR019665 This entry represents an NAD/NADP-binding domain with a core Rossmann-type fold, found in an uncharacterised protein family thought to be putative NADP oxidoreductase coenzyme F420-dependent proteins and/or NAD-dependent glycerol-3-phosphate dehydrogenase-like proteins | Back alignment and domain information |
|---|
Probab=96.38 E-value=0.0065 Score=48.35 Aligned_cols=101 Identities=18% Similarity=0.199 Sum_probs=52.8
Q ss_pred CcEEEEEcCCChhHHHHHHHHHhcccCCCCCCeEEEEEecccchhhhhhhHhhhhhhccCCccceEEeCCHHHHhCCCcE
Q 019990 5 PLRVLVTGAAGQIGYALVPMIARGIMLGPDQPVILHMLDIEPAAEALNGVKMELIDAAFPLLKGVVATTDVVEACKDVNI 84 (332)
Q Consensus 5 ~~kI~VtGaaG~IGs~l~~~L~~~~~~~~~~~~~i~l~D~~~~~~~~~~~~~dl~~~~~~~~~~v~~~~~~~~a~~~aDi 84 (332)
.+||.|+| +|.+|.+|+..|.+.++ +|.-+-.+.. +. ...+... ..... ..++.+.++++|+
T Consensus 10 ~l~I~iIG-aGrVG~~La~aL~~ag~-------~v~~v~srs~-~s----a~~a~~~----~~~~~-~~~~~~~~~~aDl 71 (127)
T PF10727_consen 10 RLKIGIIG-AGRVGTALARALARAGH-------EVVGVYSRSP-AS----AERAAAF----IGAGA-ILDLEEILRDADL 71 (127)
T ss_dssp --EEEEEC-TSCCCCHHHHHHHHTTS-------EEEEESSCHH--H----HHHHHC------TT------TTGGGCC-SE
T ss_pred ccEEEEEC-CCHHHHHHHHHHHHCCC-------eEEEEEeCCc-cc----ccccccc----ccccc-ccccccccccCCE
Confidence 57999999 69999999999998886 6655543221 11 1111111 11111 1245577899999
Q ss_pred EEEecCCCCCCCCChhHHHhhhHHHHHHHHHHHHhh--cCCCcEEEEEeC---ChhhHHHH
Q 019990 85 AVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEKH--AAPNCKVLVVAN---PANTNALI 140 (332)
Q Consensus 85 Vi~~ag~~~~~~~~~~~~~~~N~~~~~~i~~~i~~~--~~~~~~viv~sn---p~~~~~~~ 140 (332)
+|++.. ++ .+..+++.+..+ -.|+ .+++-++ +++++.++
T Consensus 72 v~iavp---------Dd-------aI~~va~~La~~~~~~~g-~iVvHtSGa~~~~vL~p~ 115 (127)
T PF10727_consen 72 VFIAVP---------DD-------AIAEVAEQLAQYGAWRPG-QIVVHTSGALGSDVLAPA 115 (127)
T ss_dssp EEE-S----------CC-------HHHHHHHHHHCC--S-TT--EEEES-SS--GGGGHHH
T ss_pred EEEEec---------hH-------HHHHHHHHHHHhccCCCC-cEEEECCCCChHHhhhhH
Confidence 999741 11 134666777665 2233 5555554 45666553
|
This Rossmann-fold domain consists of 3-layers alpha/beta/alpha, where the six beta strands are parallel in the order 321456.; PDB: 3DFU_A 3C24_A. |
| >PRK05708 2-dehydropantoate 2-reductase; Provisional | Back alignment and domain information |
|---|
Probab=96.38 E-value=0.064 Score=49.40 Aligned_cols=33 Identities=18% Similarity=0.278 Sum_probs=28.7
Q ss_pred CcEEEEEcCCChhHHHHHHHHHhcccCCCCCCeEEEEEecc
Q 019990 5 PLRVLVTGAAGQIGYALVPMIARGIMLGPDQPVILHMLDIE 45 (332)
Q Consensus 5 ~~kI~VtGaaG~IGs~l~~~L~~~~~~~~~~~~~i~l~D~~ 45 (332)
.|||+|+| +|.||+.++..|.+.|. +|.++++.
T Consensus 2 ~m~I~IiG-aGaiG~~~a~~L~~~G~-------~V~lv~r~ 34 (305)
T PRK05708 2 SMTWHILG-AGSLGSLWACRLARAGL-------PVRLILRD 34 (305)
T ss_pred CceEEEEC-CCHHHHHHHHHHHhCCC-------CeEEEEec
Confidence 46899999 69999999999988774 78999874
|
|
| >PLN02968 Probable N-acetyl-gamma-glutamyl-phosphate reductase | Back alignment and domain information |
|---|
Probab=96.36 E-value=0.011 Score=56.04 Aligned_cols=36 Identities=19% Similarity=0.328 Sum_probs=29.3
Q ss_pred CCcEEEEEcCCChhHHHHHHHHHhcccCCCCCCeEEEEEecc
Q 019990 4 NPLRVLVTGAAGQIGYALVPMIARGIMLGPDQPVILHMLDIE 45 (332)
Q Consensus 4 ~~~kI~VtGaaG~IGs~l~~~L~~~~~~~~~~~~~i~l~D~~ 45 (332)
+++||+|+||+|.+|..++..|..... .+|.++..+
T Consensus 37 ~~~kVaIvGATG~vG~eLlrlL~~hP~------~el~~l~s~ 72 (381)
T PLN02968 37 EKKRIFVLGASGYTGAEVRRLLANHPD------FEITVMTAD 72 (381)
T ss_pred cccEEEEECCCChHHHHHHHHHHhCCC------CeEEEEECh
Confidence 467999999999999999998887643 278887653
|
|
| >TIGR00872 gnd_rel 6-phosphogluconate dehydrogenase (decarboxylating) | Back alignment and domain information |
|---|
Probab=96.32 E-value=0.028 Score=51.58 Aligned_cols=67 Identities=13% Similarity=0.202 Sum_probs=43.0
Q ss_pred cEEEEEcCCChhHHHHHHHHHhcccCCCCCCeEEEEEecccchhhhhhhHhhhhhhccCCccceEEeCCHHHHhCCCcEE
Q 019990 6 LRVLVTGAAGQIGYALVPMIARGIMLGPDQPVILHMLDIEPAAEALNGVKMELIDAAFPLLKGVVATTDVVEACKDVNIA 85 (332)
Q Consensus 6 ~kI~VtGaaG~IGs~l~~~L~~~~~~~~~~~~~i~l~D~~~~~~~~~~~~~dl~~~~~~~~~~v~~~~~~~~a~~~aDiV 85 (332)
|||+|+| .|.+|++++..|.+.++ +|.++|++. ++.. .+...... ......++.+.++++|+|
T Consensus 1 M~Ig~IG-lG~mG~~la~~L~~~g~-------~V~~~dr~~--~~~~----~l~~~g~~---~~~s~~~~~~~~~~~dvI 63 (298)
T TIGR00872 1 MQLGLIG-LGRMGANIVRRLAKRGH-------DCVGYDHDQ--DAVK----AMKEDRTT---GVANLRELSQRLSAPRVV 63 (298)
T ss_pred CEEEEEc-chHHHHHHHHHHHHCCC-------EEEEEECCH--HHHH----HHHHcCCc---ccCCHHHHHhhcCCCCEE
Confidence 4799999 79999999999998875 899999864 2222 22221100 011112333456778999
Q ss_pred EEec
Q 019990 86 VMVG 89 (332)
Q Consensus 86 i~~a 89 (332)
+++.
T Consensus 64 i~~v 67 (298)
T TIGR00872 64 WVMV 67 (298)
T ss_pred EEEc
Confidence 9873
|
This family resembles a larger family (gnd) of bacterial and eukaryotic 6-phosphogluconate dehydrogenases but differs from it by a deep split in a UPGMA similarity clustering tree and the lack of a central region of about 140 residues. Among complete genomes, it is found is found in Bacillus subtilis and Mycobacterium tuberculosis, both of which also contain gnd, and in Aquifex aeolicus. The protein from Methylobacillus flagellatus KT has been characterized as a decarboxylating 6-phosphogluconate dehydrogenase as part of an unusual formaldehyde oxidation cycle. In some sequenced organisms members of this family are the sole 6-phosphogluconate dehydrogenase present and are probably active in the pentose phosphate cycle. |
| >PTZ00142 6-phosphogluconate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=96.32 E-value=0.065 Score=52.37 Aligned_cols=71 Identities=14% Similarity=0.061 Sum_probs=46.3
Q ss_pred CcEEEEEcCCChhHHHHHHHHHhcccCCCCCCeEEEEEecccchhhhhhhHhhhhhhccCCccceEEeCCHHHHhC---C
Q 019990 5 PLRVLVTGAAGQIGYALVPMIARGIMLGPDQPVILHMLDIEPAAEALNGVKMELIDAAFPLLKGVVATTDVVEACK---D 81 (332)
Q Consensus 5 ~~kI~VtGaaG~IGs~l~~~L~~~~~~~~~~~~~i~l~D~~~~~~~~~~~~~dl~~~~~~~~~~v~~~~~~~~a~~---~ 81 (332)
|.+|+|+| .|.+|++++..|+..|+ +|.++|++. ++.. ++..........+....++.++++ +
T Consensus 1 ~~~IgvIG-LG~MG~~lA~nL~~~G~-------~V~v~dr~~--~~~~----~l~~~~~~~g~~i~~~~s~~e~v~~l~~ 66 (470)
T PTZ00142 1 MSDIGLIG-LAVMGQNLALNIASRGF-------KISVYNRTY--EKTE----EFVKKAKEGNTRVKGYHTLEELVNSLKK 66 (470)
T ss_pred CCEEEEEe-EhHHHHHHHHHHHHCCC-------eEEEEeCCH--HHHH----HHHHhhhhcCCcceecCCHHHHHhcCCC
Confidence 35899999 89999999999999886 899999864 2222 221110000112334456666654 5
Q ss_pred CcEEEEec
Q 019990 82 VNIAVMVG 89 (332)
Q Consensus 82 aDiVi~~a 89 (332)
+|+|+++.
T Consensus 67 ~d~Iil~v 74 (470)
T PTZ00142 67 PRKVILLI 74 (470)
T ss_pred CCEEEEEe
Confidence 89888764
|
|
| >cd05312 NAD_bind_1_malic_enz NAD(P) binding domain of malic enzyme (ME), subgroup 1 | Back alignment and domain information |
|---|
Probab=96.28 E-value=0.013 Score=52.75 Aligned_cols=112 Identities=17% Similarity=0.281 Sum_probs=67.1
Q ss_pred CcEEEEEcCCChhHHHHHHHHHhc----ccCCCCCCeEEEEEecccchhhhhhhHhhhhhhccCCccce--EEeCCHHHH
Q 019990 5 PLRVLVTGAAGQIGYALVPMIARG----IMLGPDQPVILHMLDIEPAAEALNGVKMELIDAAFPLLKGV--VATTDVVEA 78 (332)
Q Consensus 5 ~~kI~VtGaaG~IGs~l~~~L~~~----~~~~~~~~~~i~l~D~~~~~~~~~~~~~dl~~~~~~~~~~v--~~~~~~~~a 78 (332)
..||+|.| +|..|..++..|... |+...+-..++.++|.+. .+.....|+.+...++..+. ....++.++
T Consensus 25 d~~iv~~G-AGsAg~gia~ll~~~~~~~G~~~eeA~~~i~~vD~~G---ll~~~r~~l~~~~~~~a~~~~~~~~~~L~e~ 100 (279)
T cd05312 25 DQRILFLG-AGSAGIGIADLIVSAMVREGLSEEEARKKIWLVDSKG---LLTKDRKDLTPFKKPFARKDEEKEGKSLLEV 100 (279)
T ss_pred hcEEEEEC-cCHHHHHHHHHHHHHHHHcCCChhhccCeEEEEcCCC---eEeCCCCcchHHHHHHHhhcCcccCCCHHHH
Confidence 46899999 699999999988764 542111123799999764 12111112222111111111 123578999
Q ss_pred hC--CCcEEEEecCCCCCCCCChhHHHhhhHHHHHHHHHHHHhhcCCCcEEEEEeCChh
Q 019990 79 CK--DVNIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEKHAAPNCKVLVVANPAN 135 (332)
Q Consensus 79 ~~--~aDiVi~~ag~~~~~~~~~~~~~~~N~~~~~~i~~~i~~~~~~~~~viv~snp~~ 135 (332)
++ ++|++|=+.+.+ | .+ .+++++.+.+++ +..+|+-.|||..
T Consensus 101 i~~v~ptvlIG~S~~~---g-----~f------t~evv~~Ma~~~-~~PIIFaLSNPt~ 144 (279)
T cd05312 101 VKAVKPTVLIGLSGVG---G-----AF------TEEVVRAMAKSN-ERPIIFALSNPTS 144 (279)
T ss_pred HHhcCCCEEEEeCCCC---C-----CC------CHHHHHHHHhcC-CCCEEEECCCcCC
Confidence 99 889988654432 2 11 246677788776 5567777899963
|
Malic enzyme (ME), a member of the amino acid dehydrogenase (DH)-like domain family, catalyzes the oxidative decarboxylation of L-malate to pyruvate in the presence of cations (typically Mg++ or Mn++) with the concomitant reduction of cofactor NAD+ or NADP+. ME has been found in all organisms, and plays important roles in diverse metabolic pathways such as photosynthesis and lipogenesis. This enzyme generally forms homotetramers. The conversion of malate to pyruvate by ME typically involves oxidation of malate to produce oxaloacetate, followed by decarboxylation of oxaloacetate to produce pyruvate and CO2. This subfamily consists of eukaryotic and bacterial ME. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH |
| >PRK14874 aspartate-semialdehyde dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=96.28 E-value=0.011 Score=55.26 Aligned_cols=72 Identities=19% Similarity=0.278 Sum_probs=41.9
Q ss_pred CcEEEEEcCCChhHHHHHHHHHhcccCCCCCCeEEEEEecccchhhhhhhHhhhhhhccCCccceEEeCCHHHHhCCCcE
Q 019990 5 PLRVLVTGAAGQIGYALVPMIARGIMLGPDQPVILHMLDIEPAAEALNGVKMELIDAAFPLLKGVVATTDVVEACKDVNI 84 (332)
Q Consensus 5 ~~kI~VtGaaG~IGs~l~~~L~~~~~~~~~~~~~i~l~D~~~~~~~~~~~~~dl~~~~~~~~~~v~~~~~~~~a~~~aDi 84 (332)
++||+|+||+|++|..++..|.+.++- ..+++.+-.... .+....+.. .++........+++++|+
T Consensus 1 ~~~V~IvGAtG~vG~~l~~lL~~~~hp----~~~l~~l~s~~~----~g~~l~~~g------~~i~v~d~~~~~~~~vDv 66 (334)
T PRK14874 1 GYNVAVVGATGAVGREMLNILEERNFP----VDKLRLLASARS----AGKELSFKG------KELKVEDLTTFDFSGVDI 66 (334)
T ss_pred CCEEEEECCCCHHHHHHHHHHHhCCCC----cceEEEEEcccc----CCCeeeeCC------ceeEEeeCCHHHHcCCCE
Confidence 468999999999999999999875541 126666643221 121111111 122221111234578999
Q ss_pred EEEecC
Q 019990 85 AVMVGG 90 (332)
Q Consensus 85 Vi~~ag 90 (332)
||.+.|
T Consensus 67 Vf~A~g 72 (334)
T PRK14874 67 ALFSAG 72 (334)
T ss_pred EEECCC
Confidence 988764
|
|
| >PRK11559 garR tartronate semialdehyde reductase; Provisional | Back alignment and domain information |
|---|
Probab=96.19 E-value=0.023 Score=52.07 Aligned_cols=65 Identities=20% Similarity=0.335 Sum_probs=46.0
Q ss_pred CcEEEEEcCCChhHHHHHHHHHhcccCCCCCCeEEEEEecccchhhhhhhHhhhhhhccCCccceEEeCCHHHHhCCCcE
Q 019990 5 PLRVLVTGAAGQIGYALVPMIARGIMLGPDQPVILHMLDIEPAAEALNGVKMELIDAAFPLLKGVVATTDVVEACKDVNI 84 (332)
Q Consensus 5 ~~kI~VtGaaG~IGs~l~~~L~~~~~~~~~~~~~i~l~D~~~~~~~~~~~~~dl~~~~~~~~~~v~~~~~~~~a~~~aDi 84 (332)
++||+|+| .|.+|+.++..|.+.++ +|.++|++. +... .+... ......+..+.++++|+
T Consensus 2 ~~~IgviG-~G~mG~~~a~~l~~~g~-------~v~~~d~~~--~~~~----~~~~~------g~~~~~~~~e~~~~~d~ 61 (296)
T PRK11559 2 TMKVGFIG-LGIMGKPMSKNLLKAGY-------SLVVYDRNP--EAVA----EVIAA------GAETASTAKAVAEQCDV 61 (296)
T ss_pred CceEEEEc-cCHHHHHHHHHHHHCCC-------eEEEEcCCH--HHHH----HHHHC------CCeecCCHHHHHhcCCE
Confidence 36899999 79999999999998775 788999753 1221 11111 12233456777899999
Q ss_pred EEEec
Q 019990 85 AVMVG 89 (332)
Q Consensus 85 Vi~~a 89 (332)
||.+.
T Consensus 62 vi~~v 66 (296)
T PRK11559 62 IITML 66 (296)
T ss_pred EEEeC
Confidence 99874
|
|
| >PRK06732 phosphopantothenate--cysteine ligase; Validated | Back alignment and domain information |
|---|
Probab=96.19 E-value=0.0034 Score=55.33 Aligned_cols=66 Identities=9% Similarity=0.129 Sum_probs=39.0
Q ss_pred cCCChhHHHHHHHHHhcccCCCCCCeEEEEEecccchhhhhhhHhhhhhhccCCccceEEeC----CHHHHhCCCcEEEE
Q 019990 12 GAAGQIGYALVPMIARGIMLGPDQPVILHMLDIEPAAEALNGVKMELIDAAFPLLKGVVATT----DVVEACKDVNIAVM 87 (332)
Q Consensus 12 GaaG~IGs~l~~~L~~~~~~~~~~~~~i~l~D~~~~~~~~~~~~~dl~~~~~~~~~~v~~~~----~~~~a~~~aDiVi~ 87 (332)
.++|++|++++..|+..|. +|++++.... .. ......... ..+.... .+.+.+.++|+|||
T Consensus 23 ~SSG~iG~aLA~~L~~~G~-------~V~li~r~~~---~~----~~~~~~v~~-i~v~s~~~m~~~l~~~~~~~DivIh 87 (229)
T PRK06732 23 HSTGQLGKIIAETFLAAGH-------EVTLVTTKTA---VK----PEPHPNLSI-IEIENVDDLLETLEPLVKDHDVLIH 87 (229)
T ss_pred ccchHHHHHHHHHHHhCCC-------EEEEEECccc---cc----CCCCCCeEE-EEEecHHHHHHHHHHHhcCCCEEEe
Confidence 4589999999999999886 8888875321 00 000000000 0111111 23345678999999
Q ss_pred ecCCC
Q 019990 88 VGGFP 92 (332)
Q Consensus 88 ~ag~~ 92 (332)
+||+.
T Consensus 88 ~AAvs 92 (229)
T PRK06732 88 SMAVS 92 (229)
T ss_pred CCccC
Confidence 99975
|
|
| >PRK12491 pyrroline-5-carboxylate reductase; Reviewed | Back alignment and domain information |
|---|
Probab=96.19 E-value=0.022 Score=51.61 Aligned_cols=69 Identities=19% Similarity=0.306 Sum_probs=45.9
Q ss_pred cEEEEEcCCChhHHHHHHHHHhcccCCCCCCeEEEEEecccchhhhhhhHhhhhhhccCCccceEEeCCHHHHhCCCcEE
Q 019990 6 LRVLVTGAAGQIGYALVPMIARGIMLGPDQPVILHMLDIEPAAEALNGVKMELIDAAFPLLKGVVATTDVVEACKDVNIA 85 (332)
Q Consensus 6 ~kI~VtGaaG~IGs~l~~~L~~~~~~~~~~~~~i~l~D~~~~~~~~~~~~~dl~~~~~~~~~~v~~~~~~~~a~~~aDiV 85 (332)
+||+++| +|.+|++++..|++.++.. +.+|..+|++. +.++ .+.+. + .+....+..+.+++||+|
T Consensus 3 ~~IgfIG-~G~MG~aia~~L~~~g~~~---~~~I~v~~r~~--~~~~----~l~~~---~--g~~~~~~~~e~~~~aDiI 67 (272)
T PRK12491 3 KQIGFIG-CGNMGIAMIGGMINKNIVS---PDQIICSDLNV--SNLK----NASDK---Y--GITITTNNNEVANSADIL 67 (272)
T ss_pred CeEEEEC-ccHHHHHHHHHHHHCCCCC---CceEEEECCCH--HHHH----HHHHh---c--CcEEeCCcHHHHhhCCEE
Confidence 4799999 7999999999999877432 23788998753 2222 12110 0 123344556678899999
Q ss_pred EEec
Q 019990 86 VMVG 89 (332)
Q Consensus 86 i~~a 89 (332)
|++.
T Consensus 68 iLav 71 (272)
T PRK12491 68 ILSI 71 (272)
T ss_pred EEEe
Confidence 9874
|
|
| >KOG2666 consensus UDP-glucose/GDP-mannose dehydrogenase [Carbohydrate transport and metabolism; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=96.19 E-value=0.017 Score=52.32 Aligned_cols=81 Identities=20% Similarity=0.247 Sum_probs=53.0
Q ss_pred CcEEEEEcCCChhHHHHHHHHHh-cccCCCCCCeEEEEEecccchhhhhhhHhhh--------hhhccC-CccceEEeCC
Q 019990 5 PLRVLVTGAAGQIGYALVPMIAR-GIMLGPDQPVILHMLDIEPAAEALNGVKMEL--------IDAAFP-LLKGVVATTD 74 (332)
Q Consensus 5 ~~kI~VtGaaG~IGs~l~~~L~~-~~~~~~~~~~~i~l~D~~~~~~~~~~~~~dl--------~~~~~~-~~~~v~~~~~ 74 (332)
++||+-+| +|++|......++. +.. .++.++|++.. +....--|- .+.... ...++...+|
T Consensus 1 ~~kiccig-agyvggptcavia~kcp~------i~vtvvd~s~~--ri~~wnsd~lpiyepgldevv~~crgknlffstd 71 (481)
T KOG2666|consen 1 MVKICCIG-AGYVGGPTCAVIALKCPD------IEVTVVDISVP--RINAWNSDKLPIYEPGLDEVVKQCRGKNLFFSTD 71 (481)
T ss_pred CceEEEec-CcccCCcchheeeecCCc------eEEEEEecCch--HhhcccCCCCcccCCCHHHHHHHhcCCceeeecc
Confidence 46999999 69999887765543 322 48999998652 332221111 011011 1357888899
Q ss_pred HHHHhCCCcEEEEecCCCCC
Q 019990 75 VVEACKDVNIAVMVGGFPRK 94 (332)
Q Consensus 75 ~~~a~~~aDiVi~~ag~~~~ 94 (332)
.+.+++.+|+|++....|.+
T Consensus 72 iekai~eadlvfisvntptk 91 (481)
T KOG2666|consen 72 IEKAIKEADLVFISVNTPTK 91 (481)
T ss_pred hHHHhhhcceEEEEecCCcc
Confidence 99999999999998766543
|
|
| >PF01113 DapB_N: Dihydrodipicolinate reductase, N-terminus; InterPro: IPR000846 Dihydrodipicolinate reductase catalyzes the second step in the biosynthesis of diaminopimelic acid and lysine, the NAD or NADP-dependent reduction of 2,3-dihydrodipicolinate into 2,3,4,5-tetrahydrodipicolinate [, , ] | Back alignment and domain information |
|---|
Probab=96.17 E-value=0.013 Score=46.53 Aligned_cols=72 Identities=25% Similarity=0.304 Sum_probs=44.5
Q ss_pred cEEEEEcCCChhHHHHHHHHHh-cccCCCCCCeE-EEEEecccchhhhhhhHhhhhhhccCCccceEEeCCHHHHhCCCc
Q 019990 6 LRVLVTGAAGQIGYALVPMIAR-GIMLGPDQPVI-LHMLDIEPAAEALNGVKMELIDAAFPLLKGVVATTDVVEACKDVN 83 (332)
Q Consensus 6 ~kI~VtGaaG~IGs~l~~~L~~-~~~~~~~~~~~-i~l~D~~~~~~~~~~~~~dl~~~~~~~~~~v~~~~~~~~a~~~aD 83 (332)
|||.|+|++|.+|+.++..+.+ .++ + +..+|.+.+ ...+ .|+.+........+....++.+.+..+|
T Consensus 1 mrV~i~G~~GrMG~~i~~~i~~~~~~-------~lv~~v~~~~~--~~~g--~d~g~~~~~~~~~~~v~~~l~~~~~~~D 69 (124)
T PF01113_consen 1 MRVGIVGASGRMGRAIAEAILESPGF-------ELVGAVDRKPS--AKVG--KDVGELAGIGPLGVPVTDDLEELLEEAD 69 (124)
T ss_dssp EEEEEETTTSHHHHHHHHHHHHSTTE-------EEEEEEETTTS--TTTT--SBCHHHCTSST-SSBEBS-HHHHTTH-S
T ss_pred CEEEEECCCCHHHHHHHHHHHhcCCc-------EEEEEEecCCc--cccc--chhhhhhCcCCcccccchhHHHhcccCC
Confidence 5899999889999999999988 443 4 455666431 1111 2333221111334555678888888899
Q ss_pred EEEEe
Q 019990 84 IAVMV 88 (332)
Q Consensus 84 iVi~~ 88 (332)
+||-.
T Consensus 70 VvIDf 74 (124)
T PF01113_consen 70 VVIDF 74 (124)
T ss_dssp EEEEE
T ss_pred EEEEc
Confidence 98865
|
In Escherichia coli and Mycobacterium tuberculosis, dihydrodipicolinate reductase has equal specificity for NADH and NADPH, however in Thermotoga maritima there it has a greater affinity for NADPH []. In addition, the enzyme is inhibited by high concentrations of its substrate, which consequently acts as a feedback control on the lysine biosynthesis pathway. In T. maritima, the enzyme also lacks N-terminal and C-terminal loops which are present in enzyme of the former two organisms. This entry represents the N-terminal domain of dihydrodipicolinate reductase which binds the dinucleotide NAD(P)H.; GO: 0008839 dihydrodipicolinate reductase activity, 0009089 lysine biosynthetic process via diaminopimelate, 0055114 oxidation-reduction process; PDB: 3QY9_D 1VM6_C 1ARZ_A 1DIH_A 1DRW_A 1DRV_A 1DRU_A 2DAP_A 1DAP_B 3DAP_A .... |
| >PRK11199 tyrA bifunctional chorismate mutase/prephenate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=96.14 E-value=0.014 Score=55.46 Aligned_cols=53 Identities=15% Similarity=0.255 Sum_probs=42.3
Q ss_pred CcEEEEEcCCChhHHHHHHHHHhcccCCCCCCeEEEEEecccchhhhhhhHhhhhhhccCCccceEEeCCHHHHhCCCcE
Q 019990 5 PLRVLVTGAAGQIGYALVPMIARGIMLGPDQPVILHMLDIEPAAEALNGVKMELIDAAFPLLKGVVATTDVVEACKDVNI 84 (332)
Q Consensus 5 ~~kI~VtGaaG~IGs~l~~~L~~~~~~~~~~~~~i~l~D~~~~~~~~~~~~~dl~~~~~~~~~~v~~~~~~~~a~~~aDi 84 (332)
+++|+|+||.|.+|..++..|...|+ +|.++|++.. .+..+++++||+
T Consensus 98 ~~~I~IiGG~GlmG~slA~~l~~~G~-------~V~~~d~~~~-------------------------~~~~~~~~~aDl 145 (374)
T PRK11199 98 LRPVVIVGGKGQLGRLFAKMLTLSGY-------QVRILEQDDW-------------------------DRAEDILADAGM 145 (374)
T ss_pred cceEEEEcCCChhhHHHHHHHHHCCC-------eEEEeCCCcc-------------------------hhHHHHHhcCCE
Confidence 47899999889999999999998876 8999996310 123456789999
Q ss_pred EEEec
Q 019990 85 AVMVG 89 (332)
Q Consensus 85 Vi~~a 89 (332)
||.+.
T Consensus 146 Vilav 150 (374)
T PRK11199 146 VIVSV 150 (374)
T ss_pred EEEeC
Confidence 99874
|
|
| >cd01065 NAD_bind_Shikimate_DH NAD(P) binding domain of Shikimate dehydrogenase | Back alignment and domain information |
|---|
Probab=96.06 E-value=0.043 Score=44.82 Aligned_cols=75 Identities=15% Similarity=0.116 Sum_probs=47.6
Q ss_pred CCcEEEEEcCCChhHHHHHHHHHhcccCCCCCCeEEEEEecccchhhhhhhHhhhhhhccCCccceEEeCCHHHHhCCCc
Q 019990 4 NPLRVLVTGAAGQIGYALVPMIARGIMLGPDQPVILHMLDIEPAAEALNGVKMELIDAAFPLLKGVVATTDVVEACKDVN 83 (332)
Q Consensus 4 ~~~kI~VtGaaG~IGs~l~~~L~~~~~~~~~~~~~i~l~D~~~~~~~~~~~~~dl~~~~~~~~~~v~~~~~~~~a~~~aD 83 (332)
+.++|+|+| +|.+|..++..|.+.+. .++.++|++. ++......++... . ... ...+..+.++++|
T Consensus 18 ~~~~i~iiG-~G~~g~~~a~~l~~~g~------~~v~v~~r~~--~~~~~~~~~~~~~---~-~~~-~~~~~~~~~~~~D 83 (155)
T cd01065 18 KGKKVLILG-AGGAARAVAYALAELGA------AKIVIVNRTL--EKAKALAERFGEL---G-IAI-AYLDLEELLAEAD 83 (155)
T ss_pred CCCEEEEEC-CcHHHHHHHHHHHHCCC------CEEEEEcCCH--HHHHHHHHHHhhc---c-cce-eecchhhccccCC
Confidence 467899999 59999999999987652 2799999853 2233222222110 0 001 1234555578999
Q ss_pred EEEEecCCC
Q 019990 84 IAVMVGGFP 92 (332)
Q Consensus 84 iVi~~ag~~ 92 (332)
+||.+....
T Consensus 84 vvi~~~~~~ 92 (155)
T cd01065 84 LIINTTPVG 92 (155)
T ss_pred EEEeCcCCC
Confidence 999987543
|
Shikimate dehydrogenase (DH) is an amino acid DH family member. Shikimate pathway links metabolism of carbohydrates to de novo biosynthesis of aromatic amino acids, quinones and folate. It is essential in plants, bacteria, and fungi but absent in mammals, thus making enzymes involved in this pathway ideal targets for broad spectrum antibiotics and herbicides. Shikimate DH catalyzes the reduction of 3-hydroshikimate to shikimate using the cofactor NADH. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann |
| >PRK13302 putative L-aspartate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=96.03 E-value=0.025 Score=51.17 Aligned_cols=73 Identities=22% Similarity=0.290 Sum_probs=44.6
Q ss_pred CC-CCCcEEEEEcCCChhHHHHHHHHHhc-ccCCCCCCeEEE-EEecccchhhhhhhHhhhhhhccCCccceEEeCCHHH
Q 019990 1 MA-KNPLRVLVTGAAGQIGYALVPMIARG-IMLGPDQPVILH-MLDIEPAAEALNGVKMELIDAAFPLLKGVVATTDVVE 77 (332)
Q Consensus 1 m~-~~~~kI~VtGaaG~IGs~l~~~L~~~-~~~~~~~~~~i~-l~D~~~~~~~~~~~~~dl~~~~~~~~~~v~~~~~~~~ 77 (332)
|+ +.++||+|+| +|.||+.++..|... .- .++. ++|.+. ++.......+. ......++.+
T Consensus 1 ~~~m~~irIGIIG-~G~IG~~~a~~L~~~~~~------~el~aV~dr~~--~~a~~~a~~~g--------~~~~~~~~ee 63 (271)
T PRK13302 1 MSSRPELRVAIAG-LGAIGKAIAQALDRGLPG------LTLSAVAVRDP--QRHADFIWGLR--------RPPPVVPLDQ 63 (271)
T ss_pred CCCCCeeEEEEEC-ccHHHHHHHHHHHhcCCC------eEEEEEECCCH--HHHHHHHHhcC--------CCcccCCHHH
Confidence 44 3468999999 799999999988763 11 2554 677643 22221111110 0112345666
Q ss_pred HhCCCcEEEEecC
Q 019990 78 ACKDVNIAVMVGG 90 (332)
Q Consensus 78 a~~~aDiVi~~ag 90 (332)
.+.++|+|+.++.
T Consensus 64 ll~~~D~Vvi~tp 76 (271)
T PRK13302 64 LATHADIVVEAAP 76 (271)
T ss_pred HhcCCCEEEECCC
Confidence 6788999999864
|
|
| >PRK12490 6-phosphogluconate dehydrogenase-like protein; Reviewed | Back alignment and domain information |
|---|
Probab=96.01 E-value=0.068 Score=49.07 Aligned_cols=64 Identities=14% Similarity=0.175 Sum_probs=42.9
Q ss_pred cEEEEEcCCChhHHHHHHHHHhcccCCCCCCeEEEEEecccchhhhhhhHhhhhhhccCCccceEEeCCHHHHhCC---C
Q 019990 6 LRVLVTGAAGQIGYALVPMIARGIMLGPDQPVILHMLDIEPAAEALNGVKMELIDAAFPLLKGVVATTDVVEACKD---V 82 (332)
Q Consensus 6 ~kI~VtGaaG~IGs~l~~~L~~~~~~~~~~~~~i~l~D~~~~~~~~~~~~~dl~~~~~~~~~~v~~~~~~~~a~~~---a 82 (332)
|||+|+| .|.+|++++..|.+.++ +|.++|++. ++.. .+.+. ......+..+.+++ +
T Consensus 1 m~Ig~IG-lG~mG~~mA~~L~~~g~-------~v~v~dr~~--~~~~----~~~~~------g~~~~~s~~~~~~~~~~a 60 (299)
T PRK12490 1 MKLGLIG-LGKMGGNMAERLREDGH-------EVVGYDVNQ--EAVD----VAGKL------GITARHSLEELVSKLEAP 60 (299)
T ss_pred CEEEEEc-ccHHHHHHHHHHHhCCC-------EEEEEECCH--HHHH----HHHHC------CCeecCCHHHHHHhCCCC
Confidence 3799999 79999999999998775 788999853 2222 12211 12233455555554 6
Q ss_pred cEEEEec
Q 019990 83 NIAVMVG 89 (332)
Q Consensus 83 DiVi~~a 89 (332)
|+|+++.
T Consensus 61 dvVi~~v 67 (299)
T PRK12490 61 RTIWVMV 67 (299)
T ss_pred CEEEEEe
Confidence 8988863
|
|
| >PF02882 THF_DHG_CYH_C: Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain; InterPro: IPR020631 Enzymes that participate in the transfer of one-carbon units require the coenzyme tetrahydrofolate (THF) | Back alignment and domain information |
|---|
Probab=95.99 E-value=0.038 Score=45.77 Aligned_cols=57 Identities=18% Similarity=0.280 Sum_probs=41.4
Q ss_pred CCcEEEEEcCCChhHHHHHHHHHhcccCCCCCCeEEEEEecccchhhhhhhHhhhhhhccCCccceEEeCCHHHHhCCCc
Q 019990 4 NPLRVLVTGAAGQIGYALVPMIARGIMLGPDQPVILHMLDIEPAAEALNGVKMELIDAAFPLLKGVVATTDVVEACKDVN 83 (332)
Q Consensus 4 ~~~kI~VtGaaG~IGs~l~~~L~~~~~~~~~~~~~i~l~D~~~~~~~~~~~~~dl~~~~~~~~~~v~~~~~~~~a~~~aD 83 (332)
+.++|+|+|.++.+|..++..|.+.+. .+.+.+... .++.+.++.||
T Consensus 35 ~Gk~v~VvGrs~~VG~Pla~lL~~~~a-------tVt~~h~~T--------------------------~~l~~~~~~AD 81 (160)
T PF02882_consen 35 EGKKVVVVGRSNIVGKPLAMLLLNKGA-------TVTICHSKT--------------------------KNLQEITRRAD 81 (160)
T ss_dssp TT-EEEEE-TTTTTHHHHHHHHHHTT--------EEEEE-TTS--------------------------SSHHHHHTTSS
T ss_pred CCCEEEEECCcCCCChHHHHHHHhCCC-------eEEeccCCC--------------------------Ccccceeeecc
Confidence 468999999988999999999998764 777776531 35567788999
Q ss_pred EEEEecCCCC
Q 019990 84 IAVMVGGFPR 93 (332)
Q Consensus 84 iVi~~ag~~~ 93 (332)
+||..+|.+.
T Consensus 82 IVVsa~G~~~ 91 (160)
T PF02882_consen 82 IVVSAVGKPN 91 (160)
T ss_dssp EEEE-SSSTT
T ss_pred EEeeeecccc
Confidence 9999888653
|
Various reactions generate one-carbon derivatives of THF, which can be interconverted between different oxidation states by methylene-THF dehydrogenase (1.5.1.5 from EC), methenyl-THF cyclohydrolase (3.5.4.9 from EC) and formyl-THF synthetase (6.3.4.3 from EC) [, ]. The dehydrogenase and cyclohydrolase activities are expressed by a variety of multifunctional enzymes, including the tri-functional eukaryotic C1-tetrahydrofolate synthase []; a bifunctional eukaryotic mitochondrial protein; and the bifunctional Escherichia coli folD protein [, ]. Methylene-tetrahydrofolate dehydrogenase and methenyltetrahydrofolate cyclo-hydrolase share an overlapping active site [], and as such are usually located together in proteins, acting in tandem on the carbon-nitrogen bonds of substrates other than peptide bonds. This entry represents the NAD(P)-binding domain found in these enzymes.; GO: 0003824 catalytic activity, 0004488 methylenetetrahydrofolate dehydrogenase (NADP+) activity, 0009396 folic acid-containing compound biosynthetic process, 0055114 oxidation-reduction process; PDB: 1B0A_A 2C2X_B 2C2Y_A 3NGL_C 3NGX_A 4A26_B 1EDZ_A 1EE9_A 3P2O_B 1DIA_A .... |
| >TIGR01505 tartro_sem_red 2-hydroxy-3-oxopropionate reductase | Back alignment and domain information |
|---|
Probab=95.98 E-value=0.021 Score=52.16 Aligned_cols=63 Identities=24% Similarity=0.377 Sum_probs=45.0
Q ss_pred EEEEEcCCChhHHHHHHHHHhcccCCCCCCeEEEEEecccchhhhhhhHhhhhhhccCCccceEEeCCHHHHhCCCcEEE
Q 019990 7 RVLVTGAAGQIGYALVPMIARGIMLGPDQPVILHMLDIEPAAEALNGVKMELIDAAFPLLKGVVATTDVVEACKDVNIAV 86 (332)
Q Consensus 7 kI~VtGaaG~IGs~l~~~L~~~~~~~~~~~~~i~l~D~~~~~~~~~~~~~dl~~~~~~~~~~v~~~~~~~~a~~~aDiVi 86 (332)
||+|+| .|.+|+.++..|+..++ +|.++|++. ++.. .+... ......+..++++++|+||
T Consensus 1 ~IgvIG-~G~mG~~iA~~l~~~G~-------~V~~~dr~~--~~~~----~~~~~------g~~~~~~~~~~~~~aDivi 60 (291)
T TIGR01505 1 KVGFIG-LGIMGSPMSINLAKAGY-------QLHVTTIGP--EVAD----ELLAA------GAVTAETARQVTEQADVIF 60 (291)
T ss_pred CEEEEE-ecHHHHHHHHHHHHCCC-------eEEEEcCCH--HHHH----HHHHC------CCcccCCHHHHHhcCCEEE
Confidence 589999 79999999999998875 899999853 2222 12211 1122345667889999999
Q ss_pred Eec
Q 019990 87 MVG 89 (332)
Q Consensus 87 ~~a 89 (332)
.+.
T Consensus 61 ~~v 63 (291)
T TIGR01505 61 TMV 63 (291)
T ss_pred Eec
Confidence 974
|
This model represents 2-hydroxy-3-oxopropionate reductase (EC 1.1.1.60), also called tartronate semialdehyde reductase. It follows glyoxylate carboligase and precedes glycerate kinase in D-glycerate pathway of glyoxylate degradation. The eventual product, 3-phosphoglycerate, is an intermediate of glycolysis and is readily metabolized. Tartronic semialdehyde, the substrate of this enzyme, may also come from other pathways, such as D-glucarate catabolism. |
| >KOG0725 consensus Reductases with broad range of substrate specificities [General function prediction only] | Back alignment and domain information |
|---|
Probab=95.97 E-value=0.15 Score=46.06 Aligned_cols=158 Identities=15% Similarity=0.167 Sum_probs=90.0
Q ss_pred CCcEEEEEcCCChhHHHHHHHHHhcccCCCCCCeEEEEEecccchhhhhhhHhhhhhhcc------CCccceEEeCCHHH
Q 019990 4 NPLRVLVTGAAGQIGYALVPMIARGIMLGPDQPVILHMLDIEPAAEALNGVKMELIDAAF------PLLKGVVATTDVVE 77 (332)
Q Consensus 4 ~~~kI~VtGaaG~IGs~l~~~L~~~~~~~~~~~~~i~l~D~~~~~~~~~~~~~dl~~~~~------~~~~~v~~~~~~~~ 77 (332)
..+.++||||+.-||.+++..|.+.|- .+++.+++. +.+.....++..... ....|++...+..+
T Consensus 7 ~gkvalVTG~s~GIG~aia~~la~~Ga-------~v~i~~r~~--~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~~~~ 77 (270)
T KOG0725|consen 7 AGKVALVTGGSSGIGKAIALLLAKAGA-------KVVITGRSE--ERLEETAQELGGLGYTGGKVLAIVCDVSKEVDVEK 77 (270)
T ss_pred CCcEEEEECCCChHHHHHHHHHHHCCC-------EEEEEeCCH--HHHHHHHHHHHhcCCCCCeeEEEECcCCCHHHHHH
Confidence 456788999999999999999999885 899999864 344444444432211 11234432222111
Q ss_pred -------H-hCCCcEEEEecCCCCCC----CCCh---hHHHhhhHH-HHHHHHHHHHhhcC--CCcEEEEEeCChhhHHH
Q 019990 78 -------A-CKDVNIAVMVGGFPRKE----GMER---KDVMSKNVS-IYKAQASALEKHAA--PNCKVLVVANPANTNAL 139 (332)
Q Consensus 78 -------a-~~~aDiVi~~ag~~~~~----~~~~---~~~~~~N~~-~~~~i~~~i~~~~~--~~~~viv~snp~~~~~~ 139 (332)
. +-..|++|.-||..... +.+. +..+..|+. .+..+...+..... ....+++.|......
T Consensus 78 l~~~~~~~~~GkidiLvnnag~~~~~~~~~~~s~e~~d~~~~~Nl~G~~~~~~~~a~~~~~~~~gg~I~~~ss~~~~~-- 155 (270)
T KOG0725|consen 78 LVEFAVEKFFGKIDILVNNAGALGLTGSILDLSEEVFDKIMATNLRGSAFCLKQAARPMLKKSKGGSIVNISSVAGVG-- 155 (270)
T ss_pred HHHHHHHHhCCCCCEEEEcCCcCCCCCChhhCCHHHHHHHHhhhchhHHHHHHHHHHHHHHhcCCceEEEEecccccc--
Confidence 1 34589999999874322 1222 234566777 35455444444431 234555555432210
Q ss_pred HHHHHCCCCCCCcEEEeecccHHHHHHHHHHHcCCCCCCee
Q 019990 140 ILKEFAPSIPAKNITCLTRLDHNRAMGQISERLKVHVSDVK 180 (332)
Q Consensus 140 ~~~~~~~~~~~~~i~~~t~l~~~r~~~~~a~~~~v~~~~v~ 180 (332)
...+....|+.++-....+.+.+|..+. +..+|
T Consensus 156 ------~~~~~~~~Y~~sK~al~~ltr~lA~El~--~~gIR 188 (270)
T KOG0725|consen 156 ------PGPGSGVAYGVSKAALLQLTRSLAKELA--KHGIR 188 (270)
T ss_pred ------CCCCCcccchhHHHHHHHHHHHHHHHHh--hcCcE
Confidence 1122224678888777888877777655 34455
|
|
| >PF02826 2-Hacid_dh_C: D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain; InterPro: IPR006140 A number of NAD-dependent 2-hydroxyacid dehydrogenases which seem to be specific for the D-isomer of their substrate have been shown to be functionally and structurally related | Back alignment and domain information |
|---|
Probab=95.90 E-value=0.033 Score=47.00 Aligned_cols=66 Identities=21% Similarity=0.135 Sum_probs=45.6
Q ss_pred CCcEEEEEcCCChhHHHHHHHHHhcccCCCCCCeEEEEEecccchhhhhhhHhhhhhhccCCccceEEeCCHHHHhCCCc
Q 019990 4 NPLRVLVTGAAGQIGYALVPMIARGIMLGPDQPVILHMLDIEPAAEALNGVKMELIDAAFPLLKGVVATTDVVEACKDVN 83 (332)
Q Consensus 4 ~~~kI~VtGaaG~IGs~l~~~L~~~~~~~~~~~~~i~l~D~~~~~~~~~~~~~dl~~~~~~~~~~v~~~~~~~~a~~~aD 83 (332)
..++|+|+| .|.||+.++..|..-|. +|..+|...... . ...+. .+ ...++.+.++.||
T Consensus 35 ~g~tvgIiG-~G~IG~~vA~~l~~fG~-------~V~~~d~~~~~~----~--~~~~~------~~-~~~~l~ell~~aD 93 (178)
T PF02826_consen 35 RGKTVGIIG-YGRIGRAVARRLKAFGM-------RVIGYDRSPKPE----E--GADEF------GV-EYVSLDELLAQAD 93 (178)
T ss_dssp TTSEEEEES-TSHHHHHHHHHHHHTT--------EEEEEESSCHHH----H--HHHHT------TE-EESSHHHHHHH-S
T ss_pred CCCEEEEEE-EcCCcCeEeeeeecCCc-------eeEEecccCChh----h--hcccc------cc-eeeehhhhcchhh
Confidence 357999999 79999999999998775 899999864211 0 01111 12 2457888899999
Q ss_pred EEEEecC
Q 019990 84 IAVMVGG 90 (332)
Q Consensus 84 iVi~~ag 90 (332)
+|+.+..
T Consensus 94 iv~~~~p 100 (178)
T PF02826_consen 94 IVSLHLP 100 (178)
T ss_dssp EEEE-SS
T ss_pred hhhhhhc
Confidence 9998753
|
All contain a glycine-rich region located in the central section of these enzymes, this region corresponds to the NAD-binding domain. The catalytic domain is described in IPR006139 from INTERPRO ; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0048037 cofactor binding, 0055114 oxidation-reduction process; PDB: 3JTM_A 3NAQ_B 3N7U_J 3KB6_B 3GG9_A 1QP8_B 2CUK_C 2W2L_D 2W2K_A 1WWK_A .... |
| >KOG2711 consensus Glycerol-3-phosphate dehydrogenase/dihydroxyacetone 3-phosphate reductase [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=95.89 E-value=0.24 Score=45.54 Aligned_cols=105 Identities=26% Similarity=0.432 Sum_probs=60.5
Q ss_pred CCcEEEEEcCCChhHHHHHHHHHhcc----cCCCCCCeEEEEEecccch--hhhhhhHhhhhhhccC------CccceEE
Q 019990 4 NPLRVLVTGAAGQIGYALVPMIARGI----MLGPDQPVILHMLDIEPAA--EALNGVKMELIDAAFP------LLKGVVA 71 (332)
Q Consensus 4 ~~~kI~VtGaaG~IGs~l~~~L~~~~----~~~~~~~~~i~l~D~~~~~--~~~~~~~~dl~~~~~~------~~~~v~~ 71 (332)
.+.||+|+| +|.=|++++..+..+- .+. ..++...++..-.. +++.. ...-.|.+.. +..++..
T Consensus 20 ~~~kV~ivG-sGnWGsaiaki~~~n~~~~~~f~--~~Vrmwv~ee~i~~~~~~L~e-iIN~~heN~KYlpg~~lP~NvvA 95 (372)
T KOG2711|consen 20 DPLKVCIVG-SGNWGSAIAKIVGENVKEFPIFD--PQVRMWVFEEEINGEAEKLTE-IINSRHENVKYLPGIKLPENVVA 95 (372)
T ss_pred CceEEEEEc-cChHHHHHHHHHhhhhhhccccC--ceeeEEEeccccCChhHHHHH-HhccccccccccCCccCCCCeEe
Confidence 468999999 7999999998876531 121 12233334322111 11111 1111222221 2357888
Q ss_pred eCCHHHHhCCCcEEEEecCCCCCCCCChhHHHhhhHHHHHHHHHHHHhhcCCCcEEE
Q 019990 72 TTDVVEACKDVNIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEKHAAPNCKVL 128 (332)
Q Consensus 72 ~~~~~~a~~~aDiVi~~ag~~~~~~~~~~~~~~~N~~~~~~i~~~i~~~~~~~~~vi 128 (332)
.+|+.++++|||++|+.- |. +.+..+.+.+..+-.|++..|
T Consensus 96 v~dl~ea~~dADilvf~v--Ph--------------Qf~~~ic~~l~g~vk~~~~aI 136 (372)
T KOG2711|consen 96 VPDLVEAAKDADILVFVV--PH--------------QFIPRICEQLKGYVKPGATAI 136 (372)
T ss_pred cchHHHHhccCCEEEEeC--Ch--------------hhHHHHHHHHhcccCCCCeEE
Confidence 889999999999999862 22 224456777777655555543
|
|
| >TIGR02813 omega_3_PfaA polyketide-type polyunsaturated fatty acid synthase PfaA | Back alignment and domain information |
|---|
Probab=95.89 E-value=0.049 Score=63.11 Aligned_cols=35 Identities=17% Similarity=0.136 Sum_probs=28.7
Q ss_pred CcEEEEEcCCChhHHHHHHHHHhcccCCCCCCeEEEEEecc
Q 019990 5 PLRVLVTGAAGQIGYALVPMIARGIMLGPDQPVILHMLDIE 45 (332)
Q Consensus 5 ~~kI~VtGaaG~IGs~l~~~L~~~~~~~~~~~~~i~l~D~~ 45 (332)
.+.++||||++.||..++..|++.+- .+++|++++
T Consensus 1997 g~vvLVTGGarGIG~aiA~~LA~~~g------a~viL~gRs 2031 (2582)
T TIGR02813 1997 DDVFLVTGGAKGVTFECALELAKQCQ------AHFILAGRS 2031 (2582)
T ss_pred CCEEEEeCCCCHHHHHHHHHHHHhcC------CEEEEEeCC
Confidence 45799999999999999999987631 178888875
|
Members of the seed for this alignment are involved in omega-3 polyunsaturated fatty acid biosynthesis, such as the protein PfaA from the eicosapentaenoic acid biosynthesis operon in Photobacterium profundum strain SS9. PfaA is encoded together with PfaB, PfaC, and PfaD, and the functions of the individual polypeptides have not yet been described. More distant homologs of PfaA, also included with the reach of this model, appear to be involved in polyketide-like biosynthetic mechanisms of polyunsaturated fatty acid biosynthesis, an alternative to the more familiar iterated mechanism of chain extension and desaturation, and in most cases are encoded near genes for homologs of PfaB, PfaC, and/or PfaD. |
| >PLN02383 aspartate semialdehyde dehydrogenase | Back alignment and domain information |
|---|
Probab=95.84 E-value=0.033 Score=52.20 Aligned_cols=73 Identities=19% Similarity=0.262 Sum_probs=43.3
Q ss_pred CCcEEEEEcCCChhHHHHHHHHHhcccCCCCCCeEEEEEecccchhhhhhhHhhhhhhccCCccceEEeCCHHHHhCCCc
Q 019990 4 NPLRVLVTGAAGQIGYALVPMIARGIMLGPDQPVILHMLDIEPAAEALNGVKMELIDAAFPLLKGVVATTDVVEACKDVN 83 (332)
Q Consensus 4 ~~~kI~VtGaaG~IGs~l~~~L~~~~~~~~~~~~~i~l~D~~~~~~~~~~~~~dl~~~~~~~~~~v~~~~~~~~a~~~aD 83 (332)
+++||+|+||+|++|..++..|...++- ..++..+.... ..|...+.. . .++....-..+++.++|
T Consensus 6 ~~~kVaVvGAtG~vG~eLlrlL~~~~hP----~~~l~~las~r----saGk~~~~~-----~-~~~~v~~~~~~~~~~~D 71 (344)
T PLN02383 6 NGPSVAIVGVTGAVGQEFLSVLTDRDFP----YSSLKMLASAR----SAGKKVTFE-----G-RDYTVEELTEDSFDGVD 71 (344)
T ss_pred CCCeEEEEcCCChHHHHHHHHHHhCCCC----cceEEEEEccC----CCCCeeeec-----C-ceeEEEeCCHHHHcCCC
Confidence 5689999999999999999988775431 12666554321 112211111 0 12222211134568899
Q ss_pred EEEEecC
Q 019990 84 IAVMVGG 90 (332)
Q Consensus 84 iVi~~ag 90 (332)
+||++++
T Consensus 72 ~vf~a~p 78 (344)
T PLN02383 72 IALFSAG 78 (344)
T ss_pred EEEECCC
Confidence 9998764
|
|
| >KOG1014 consensus 17 beta-hydroxysteroid dehydrogenase type 3, HSD17B3 [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=95.80 E-value=0.04 Score=50.03 Aligned_cols=116 Identities=16% Similarity=0.196 Sum_probs=70.9
Q ss_pred EEEEcCCChhHHHHHHHHHhcccCCCCCCeEEEEEecccchhhhhhhHhhhhhhcc---C-CccceEEe----CCHHHHh
Q 019990 8 VLVTGAAGQIGYALVPMIARGIMLGPDQPVILHMLDIEPAAEALNGVKMELIDAAF---P-LLKGVVAT----TDVVEAC 79 (332)
Q Consensus 8 I~VtGaaG~IGs~l~~~L~~~~~~~~~~~~~i~l~D~~~~~~~~~~~~~dl~~~~~---~-~~~~v~~~----~~~~~a~ 79 (332)
..||||+..||..++..|+.+|+ .++|+.+.. +++.....|+.+... . ...|++.. +.+.+.+
T Consensus 52 AVVTGaTDGIGKayA~eLAkrG~-------nvvLIsRt~--~KL~~v~kEI~~~~~vev~~i~~Dft~~~~~ye~i~~~l 122 (312)
T KOG1014|consen 52 AVVTGATDGIGKAYARELAKRGF-------NVVLISRTQ--EKLEAVAKEIEEKYKVEVRIIAIDFTKGDEVYEKLLEKL 122 (312)
T ss_pred EEEECCCCcchHHHHHHHHHcCC-------EEEEEeCCH--HHHHHHHHHHHHHhCcEEEEEEEecCCCchhHHHHHHHh
Confidence 56899999999999999999997 899999864 578777777755321 0 11233222 2244556
Q ss_pred CCCc--EEEEecCCCCC-CC----CCh---hHHHhhhH----HHHHHHHHHHHhhcCCCcEEEEEeCCh
Q 019990 80 KDVN--IAVMVGGFPRK-EG----MER---KDVMSKNV----SIYKAQASALEKHAAPNCKVLVVANPA 134 (332)
Q Consensus 80 ~~aD--iVi~~ag~~~~-~~----~~~---~~~~~~N~----~~~~~i~~~i~~~~~~~~~viv~snp~ 134 (332)
.+-| +.|..+|.... |. .+. .+.+..|+ ..++-++..+.+- +.+.+++.++..
T Consensus 123 ~~~~VgILVNNvG~~~~~P~~f~~~~~~~~~~ii~vN~~~~~~~t~~ilp~M~~r--~~G~IvnigS~a 189 (312)
T KOG1014|consen 123 AGLDVGILVNNVGMSYDYPESFLKYPEGELQNIINVNILSVTLLTQLILPGMVER--KKGIIVNIGSFA 189 (312)
T ss_pred cCCceEEEEecccccCCCcHHHHhCchhhhhheeEEecchHHHHHHHhhhhhhcC--CCceEEEecccc
Confidence 6555 57777776432 11 111 12233343 3456666667663 356777777543
|
|
| >PRK06598 aspartate-semialdehyde dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=95.77 E-value=0.035 Score=52.23 Aligned_cols=74 Identities=15% Similarity=0.169 Sum_probs=42.3
Q ss_pred CcEEEEEcCCChhHHHHHHHHHhcccCCCCCCeEEEEEecccchhhhhhhHhhhhhhccCCccceEEeCCHHHHhCCCcE
Q 019990 5 PLRVLVTGAAGQIGYALVPMIARGIMLGPDQPVILHMLDIEPAAEALNGVKMELIDAAFPLLKGVVATTDVVEACKDVNI 84 (332)
Q Consensus 5 ~~kI~VtGaaG~IGs~l~~~L~~~~~~~~~~~~~i~l~D~~~~~~~~~~~~~dl~~~~~~~~~~v~~~~~~~~a~~~aDi 84 (332)
|++|+|+||+|.+|+.+..+|+....+.. .+++++.... ..+....+... ...+....+ .+.++++|+
T Consensus 1 m~~VAIVGATG~vG~ell~llL~~~~f~~---~~l~~~ss~~----sg~~~~~f~g~----~~~v~~~~~-~~~~~~~Di 68 (369)
T PRK06598 1 MKKVGFVGWRGMVGSVLMQRMVEENDFDL---IEPVFFSTSQ----AGGAAPSFGGK----EGTLQDAFD-IDALKKLDI 68 (369)
T ss_pred CeEEEEEeCCCHHHHHHHHHHHhCCCCCc---CcEEEecchh----hCCcccccCCC----cceEEecCC-hhHhcCCCE
Confidence 36899999999999999987776554321 2466665421 12211111110 001111122 245688999
Q ss_pred EEEecC
Q 019990 85 AVMVGG 90 (332)
Q Consensus 85 Vi~~ag 90 (332)
||++++
T Consensus 69 vf~a~~ 74 (369)
T PRK06598 69 IITCQG 74 (369)
T ss_pred EEECCC
Confidence 999764
|
|
| >PRK09599 6-phosphogluconate dehydrogenase-like protein; Reviewed | Back alignment and domain information |
|---|
Probab=95.75 E-value=0.1 Score=47.91 Aligned_cols=33 Identities=21% Similarity=0.333 Sum_probs=29.0
Q ss_pred cEEEEEcCCChhHHHHHHHHHhcccCCCCCCeEEEEEeccc
Q 019990 6 LRVLVTGAAGQIGYALVPMIARGIMLGPDQPVILHMLDIEP 46 (332)
Q Consensus 6 ~kI~VtGaaG~IGs~l~~~L~~~~~~~~~~~~~i~l~D~~~ 46 (332)
|||+|+| .|.+|+.++..|+..++ +|.++|++.
T Consensus 1 m~Ig~IG-lG~MG~~mA~~L~~~g~-------~v~v~dr~~ 33 (301)
T PRK09599 1 MQLGMIG-LGRMGGNMARRLLRGGH-------EVVGYDRNP 33 (301)
T ss_pred CEEEEEc-ccHHHHHHHHHHHHCCC-------eEEEEECCH
Confidence 4799999 79999999999998875 899999853
|
|
| >KOG4039 consensus Serine/threonine kinase TIP30/CC3 [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=95.73 E-value=0.023 Score=47.34 Aligned_cols=106 Identities=11% Similarity=0.093 Sum_probs=63.4
Q ss_pred CCCcEEEEEcCCChhHHHHHHHHHhcccCCCCCCeEEEEEecccchhhhhhhHhhhhhhccCCccceEEeCCHHHHhCCC
Q 019990 3 KNPLRVLVTGAAGQIGYALVPMIARGIMLGPDQPVILHMLDIEPAAEALNGVKMELIDAAFPLLKGVVATTDVVEACKDV 82 (332)
Q Consensus 3 ~~~~kI~VtGaaG~IGs~l~~~L~~~~~~~~~~~~~i~l~D~~~~~~~~~~~~~dl~~~~~~~~~~v~~~~~~~~a~~~a 82 (332)
+++|...|.||+|-+|+-+..++.+.+.++ .|+++-+++.-+...+... . ....++.--.++.++.++.
T Consensus 16 mq~~s~fvlGAtG~~G~~llk~~~E~~~FS-----KV~~i~RR~~~d~at~k~v--~----q~~vDf~Kl~~~a~~~qg~ 84 (238)
T KOG4039|consen 16 MQNMSGFVLGATGLCGGGLLKHAQEAPQFS-----KVYAILRRELPDPATDKVV--A----QVEVDFSKLSQLATNEQGP 84 (238)
T ss_pred hhccceEEEeccccccHHHHHHHHhcccce-----eEEEEEeccCCCcccccee--e----eEEechHHHHHHHhhhcCC
Confidence 457789999999999999999999988775 7877776521100000000 0 0011222223455667899
Q ss_pred cEEEEecCCCC-CCCCChhHHHhhhHHHHHHHHHHHHhhc
Q 019990 83 NIAVMVGGFPR-KEGMERKDVMSKNVSIYKAQASALEKHA 121 (332)
Q Consensus 83 DiVi~~ag~~~-~~~~~~~~~~~~N~~~~~~i~~~i~~~~ 121 (332)
|+.+.+-|..| +.|-+ .+++..-+.....++.++..+
T Consensus 85 dV~FcaLgTTRgkaGad--gfykvDhDyvl~~A~~AKe~G 122 (238)
T KOG4039|consen 85 DVLFCALGTTRGKAGAD--GFYKVDHDYVLQLAQAAKEKG 122 (238)
T ss_pred ceEEEeecccccccccC--ceEeechHHHHHHHHHHHhCC
Confidence 99988766544 33322 234444555666677776654
|
|
| >PRK08664 aspartate-semialdehyde dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=95.68 E-value=0.045 Score=51.49 Aligned_cols=33 Identities=27% Similarity=0.404 Sum_probs=27.2
Q ss_pred CcEEEEEcCCChhHHHHHHHHHhcccCCCCCCeEEEEEe
Q 019990 5 PLRVLVTGAAGQIGYALVPMIARGIMLGPDQPVILHMLD 43 (332)
Q Consensus 5 ~~kI~VtGaaG~IGs~l~~~L~~~~~~~~~~~~~i~l~D 43 (332)
++||+|+||+|++|+.++..|..... .+++.+.
T Consensus 3 ~~~V~I~GatG~iG~~l~~~L~~~p~------~el~~~~ 35 (349)
T PRK08664 3 KLKVGILGATGMVGQRFVQLLANHPW------FEVTALA 35 (349)
T ss_pred CcEEEEECCCCHHHHHHHHHHHcCCC------ceEEEEE
Confidence 57999999999999999998886543 2777773
|
|
| >TIGR02371 ala_DH_arch alanine dehydrogenase, Archaeoglobus fulgidus type | Back alignment and domain information |
|---|
Probab=95.66 E-value=0.082 Score=49.19 Aligned_cols=74 Identities=20% Similarity=0.192 Sum_probs=50.0
Q ss_pred CCcEEEEEcCCChhHHHHHHHHHhcccCCCCCCeEEEEEecccchhhhhhhHhhhhhhccCCccceEEeCCHHHHhCCCc
Q 019990 4 NPLRVLVTGAAGQIGYALVPMIARGIMLGPDQPVILHMLDIEPAAEALNGVKMELIDAAFPLLKGVVATTDVVEACKDVN 83 (332)
Q Consensus 4 ~~~kI~VtGaaG~IGs~l~~~L~~~~~~~~~~~~~i~l~D~~~~~~~~~~~~~dl~~~~~~~~~~v~~~~~~~~a~~~aD 83 (332)
+..+++|+| +|..|.+.+..|...... .+|.++|++. ++......++.+. ...+....+..+++++||
T Consensus 127 ~~~~lgiiG-~G~qA~~~l~al~~~~~~-----~~v~V~~r~~--~~~~~~~~~~~~~----g~~v~~~~~~~eav~~aD 194 (325)
T TIGR02371 127 DSSVLGIIG-AGRQAWTQLEALSRVFDL-----EEVSVYCRTP--STREKFALRASDY----EVPVRAATDPREAVEGCD 194 (325)
T ss_pred CCCEEEEEC-CCHHHHHHHHHHHhcCCC-----CEEEEECCCH--HHHHHHHHHHHhh----CCcEEEeCCHHHHhccCC
Confidence 457899999 799999877776553222 3899999864 3444333333321 113455678889999999
Q ss_pred EEEEec
Q 019990 84 IAVMVG 89 (332)
Q Consensus 84 iVi~~a 89 (332)
+|+.+-
T Consensus 195 iVitaT 200 (325)
T TIGR02371 195 ILVTTT 200 (325)
T ss_pred EEEEec
Confidence 999754
|
This enzyme, a homolog of bacterial ornithine cyclodeaminases and marsupial mu-crystallins, is a homodimeric, NAD-dependent alanine dehydrogenase found in Archaeoglobus fulgidus and several other Archaea. For a number of close homologs, scoring between trusted and noise cutoffs, it is not clear at present what is the enzymatic activity. |
| >PRK00048 dihydrodipicolinate reductase; Provisional | Back alignment and domain information |
|---|
Probab=95.65 E-value=0.039 Score=49.52 Aligned_cols=67 Identities=25% Similarity=0.334 Sum_probs=42.4
Q ss_pred CcEEEEEcCCChhHHHHHHHHHhcccCCCCCCeEE-EEEecccchhhhhhhHhhhhhhccCCccceEEeCCHHHHhCCCc
Q 019990 5 PLRVLVTGAAGQIGYALVPMIARGIMLGPDQPVIL-HMLDIEPAAEALNGVKMELIDAAFPLLKGVVATTDVVEACKDVN 83 (332)
Q Consensus 5 ~~kI~VtGaaG~IGs~l~~~L~~~~~~~~~~~~~i-~l~D~~~~~~~~~~~~~dl~~~~~~~~~~v~~~~~~~~a~~~aD 83 (332)
|+||+|+|++|.+|+.++..+.+..-+ ++ .++|.+.. ..... . ..++....++.+.++++|
T Consensus 1 ~mkV~IiG~~G~mG~~i~~~l~~~~~~------elvav~d~~~~--~~~~~----~------~~~i~~~~dl~~ll~~~D 62 (257)
T PRK00048 1 MIKVAVAGASGRMGRELIEAVEAAEDL------ELVAAVDRPGS--PLVGQ----G------ALGVAITDDLEAVLADAD 62 (257)
T ss_pred CcEEEEECCCCHHHHHHHHHHHhCCCC------EEEEEEecCCc--ccccc----C------CCCccccCCHHHhccCCC
Confidence 479999997799999999887754211 44 45776431 11111 1 112334567777777899
Q ss_pred EEEEec
Q 019990 84 IAVMVG 89 (332)
Q Consensus 84 iVi~~a 89 (332)
+||.+.
T Consensus 63 vVid~t 68 (257)
T PRK00048 63 VLIDFT 68 (257)
T ss_pred EEEECC
Confidence 998664
|
|
| >cd00762 NAD_bind_malic_enz NAD(P) binding domain of malic enzyme | Back alignment and domain information |
|---|
Probab=95.64 E-value=0.038 Score=49.11 Aligned_cols=112 Identities=14% Similarity=0.165 Sum_probs=66.3
Q ss_pred CcEEEEEcCCChhHHHHHHHHHhccc----CCCCCCeEEEEEecccchhhhhhhHhhhhhhccC---CccceEEeCCHHH
Q 019990 5 PLRVLVTGAAGQIGYALVPMIARGIM----LGPDQPVILHMLDIEPAAEALNGVKMELIDAAFP---LLKGVVATTDVVE 77 (332)
Q Consensus 5 ~~kI~VtGaaG~IGs~l~~~L~~~~~----~~~~~~~~i~l~D~~~~~~~~~~~~~dl~~~~~~---~~~~v~~~~~~~~ 77 (332)
..||++.| +|..|..++..|+..+. ...+-..++.++|... .+.....++.....+ +..+-....++.+
T Consensus 25 d~riv~~G-AGsAg~gia~ll~~~~~~~Gls~e~A~~~i~~vD~~G---ll~~~r~~l~~~~~~~~~~~~~~~~~~~L~e 100 (254)
T cd00762 25 EHKVLFNG-AGAAALGIANLIVXLXVKEGISKEEACKRIWXVDRKG---LLVKNRKETCPNEYHLARFANPERESGDLED 100 (254)
T ss_pred hcEEEEEC-cCHHHHHHHHHHHHHHHhcCCCHHHHhccEEEECCCC---eEeCCCCccCHHHHHHHHHcCcccccCCHHH
Confidence 46899999 69999999998876432 1111123789999754 111111111110001 1111122358899
Q ss_pred HhC--CCcEEEEecCCCCCCCCChhHHHhhhHHHHHHHHHHHHhhcCCCcEEEEEeCChh
Q 019990 78 ACK--DVNIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEKHAAPNCKVLVVANPAN 135 (332)
Q Consensus 78 a~~--~aDiVi~~ag~~~~~~~~~~~~~~~N~~~~~~i~~~i~~~~~~~~~viv~snp~~ 135 (332)
+++ ++|++|=+.+.+ | . .++++++.+.+++ +..+|+-.|||..
T Consensus 101 av~~~kptvlIG~S~~~---g-----~------ft~evv~~Ma~~~-~~PIIFaLSNPt~ 145 (254)
T cd00762 101 AVEAAKPDFLIGVSRVG---G-----A------FTPEVIRAXAEIN-ERPVIFALSNPTS 145 (254)
T ss_pred HHHhhCCCEEEEeCCCC---C-----C------CCHHHHHHHhhcC-CCCEEEECCCcCC
Confidence 999 999988665433 2 1 1246777788776 5667777899963
|
Malic enzyme (ME), a member of the amino acid dehydrogenase (DH)-like domain family, catalyzes the oxidative decarboxylation of L-malate to pyruvate in the presence of cations (typically Mg++ or Mn++) with the concomitant reduction of cofactor NAD+ or NADP+. ME has been found in all organisms and plays important roles in diverse metabolic pathways such as photosynthesis and lipogenesis. This enzyme generally forms homotetramers. The conversion of malate to pyruvate by ME typically involves oxidation of malate to produce oxaloacetate, followed by decarboxylation of oxaloacetate to produce pyruvate and CO2. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glut |
| >PRK14106 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional | Back alignment and domain information |
|---|
Probab=95.61 E-value=0.074 Score=51.69 Aligned_cols=79 Identities=25% Similarity=0.270 Sum_probs=49.6
Q ss_pred CCCCCcEEEEEcCCChhHHHHHHHHHhcccCCCCCCeEEEEEecccchhhhhhhHhhhhhhccCCccceEEeCCHHHHhC
Q 019990 1 MAKNPLRVLVTGAAGQIGYALVPMIARGIMLGPDQPVILHMLDIEPAAEALNGVKMELIDAAFPLLKGVVATTDVVEACK 80 (332)
Q Consensus 1 m~~~~~kI~VtGaaG~IGs~l~~~L~~~~~~~~~~~~~i~l~D~~~~~~~~~~~~~dl~~~~~~~~~~v~~~~~~~~a~~ 80 (332)
|..+.++|+|+|+ |.+|..++..|+..|. +|+++|.... +.+.....++.... ..+.......+...
T Consensus 1 ~~~~~k~v~iiG~-g~~G~~~A~~l~~~G~-------~V~~~d~~~~-~~~~~~~~~l~~~~----~~~~~~~~~~~~~~ 67 (450)
T PRK14106 1 MELKGKKVLVVGA-GVSGLALAKFLKKLGA-------KVILTDEKEE-DQLKEALEELGELG----IELVLGEYPEEFLE 67 (450)
T ss_pred CCcCCCEEEEECC-CHHHHHHHHHHHHCCC-------EEEEEeCCch-HHHHHHHHHHHhcC----CEEEeCCcchhHhh
Confidence 5556789999995 7799999999999886 8999998532 12222222232111 11211111123456
Q ss_pred CCcEEEEecCCC
Q 019990 81 DVNIAVMVGGFP 92 (332)
Q Consensus 81 ~aDiVi~~ag~~ 92 (332)
++|+||..+|.+
T Consensus 68 ~~d~vv~~~g~~ 79 (450)
T PRK14106 68 GVDLVVVSPGVP 79 (450)
T ss_pred cCCEEEECCCCC
Confidence 799999998874
|
|
| >PRK15059 tartronate semialdehyde reductase; Provisional | Back alignment and domain information |
|---|
Probab=95.61 E-value=0.041 Score=50.41 Aligned_cols=63 Identities=22% Similarity=0.369 Sum_probs=44.2
Q ss_pred cEEEEEcCCChhHHHHHHHHHhcccCCCCCCeEEEEEecccchhhhhhhHhhhhhhccCCccceEEeCCHHHHhCCCcEE
Q 019990 6 LRVLVTGAAGQIGYALVPMIARGIMLGPDQPVILHMLDIEPAAEALNGVKMELIDAAFPLLKGVVATTDVVEACKDVNIA 85 (332)
Q Consensus 6 ~kI~VtGaaG~IGs~l~~~L~~~~~~~~~~~~~i~l~D~~~~~~~~~~~~~dl~~~~~~~~~~v~~~~~~~~a~~~aDiV 85 (332)
|||+++| .|.+|+.++..|++.++ ++.++|++.. .. ++... ......+..++.+++|+|
T Consensus 1 m~Ig~IG-lG~MG~~ma~~L~~~G~-------~v~v~~~~~~---~~----~~~~~------g~~~~~s~~~~~~~advV 59 (292)
T PRK15059 1 MKLGFIG-LGIMGTPMAINLARAGH-------QLHVTTIGPV---AD----ELLSL------GAVSVETARQVTEASDII 59 (292)
T ss_pred CeEEEEc-cCHHHHHHHHHHHHCCC-------eEEEEeCCHh---HH----HHHHc------CCeecCCHHHHHhcCCEE
Confidence 3799999 89999999999998886 7888887531 11 12111 122234566777899999
Q ss_pred EEec
Q 019990 86 VMVG 89 (332)
Q Consensus 86 i~~a 89 (332)
|++.
T Consensus 60 i~~v 63 (292)
T PRK15059 60 FIMV 63 (292)
T ss_pred EEeC
Confidence 9874
|
|
| >PLN02712 arogenate dehydrogenase | Back alignment and domain information |
|---|
Probab=95.59 E-value=0.32 Score=49.75 Aligned_cols=65 Identities=14% Similarity=0.190 Sum_probs=44.0
Q ss_pred CCcEEEEEcCCChhHHHHHHHHHhcccCCCCCCeEEEEEecccchhhhhhhHhhhhhhccCCccceEEeCCHHHHh-CCC
Q 019990 4 NPLRVLVTGAAGQIGYALVPMIARGIMLGPDQPVILHMLDIEPAAEALNGVKMELIDAAFPLLKGVVATTDVVEAC-KDV 82 (332)
Q Consensus 4 ~~~kI~VtGaaG~IGs~l~~~L~~~~~~~~~~~~~i~l~D~~~~~~~~~~~~~dl~~~~~~~~~~v~~~~~~~~a~-~~a 82 (332)
+++||+|+| .|.+|..++..|.+.|+ +|..+|++.. . .... .. .+....+..+.+ +++
T Consensus 51 ~~~kIgIIG-~G~mG~slA~~L~~~G~-------~V~~~dr~~~--~--~~A~---~~------Gv~~~~d~~e~~~~~a 109 (667)
T PLN02712 51 TQLKIAIIG-FGNYGQFLAKTLISQGH-------TVLAHSRSDH--S--LAAR---SL------GVSFFLDPHDLCERHP 109 (667)
T ss_pred CCCEEEEEc-cCHHHHHHHHHHHHCCC-------EEEEEeCCHH--H--HHHH---Hc------CCEEeCCHHHHhhcCC
Confidence 358999999 79999999999988774 7888997521 1 1111 11 122344555544 579
Q ss_pred cEEEEec
Q 019990 83 NIAVMVG 89 (332)
Q Consensus 83 DiVi~~a 89 (332)
|+||++.
T Consensus 110 DvViLav 116 (667)
T PLN02712 110 DVILLCT 116 (667)
T ss_pred CEEEEcC
Confidence 9999874
|
|
| >COG0002 ArgC Acetylglutamate semialdehyde dehydrogenase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=95.57 E-value=0.033 Score=51.44 Aligned_cols=36 Identities=25% Similarity=0.336 Sum_probs=29.6
Q ss_pred CCcEEEEEcCCChhHHHHHHHHHhcccCCCCCCeEEEEEecc
Q 019990 4 NPLRVLVTGAAGQIGYALVPMIARGIMLGPDQPVILHMLDIE 45 (332)
Q Consensus 4 ~~~kI~VtGaaG~IGs~l~~~L~~~~~~~~~~~~~i~l~D~~ 45 (332)
+|+||+|+||+|+.|..|...|..... .|+.++..+
T Consensus 1 ~~~kV~IvGasGYtG~EL~rlL~~Hp~------ve~~~~ss~ 36 (349)
T COG0002 1 MMIKVGIVGASGYTGLELLRLLAGHPD------VELILISSR 36 (349)
T ss_pred CCceEEEEcCCCCcHHHHHHHHhcCCC------eEEEEeech
Confidence 368999999999999999999987654 377777754
|
|
| >PRK08818 prephenate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=95.56 E-value=0.16 Score=48.07 Aligned_cols=58 Identities=14% Similarity=0.141 Sum_probs=42.5
Q ss_pred CCCcEEEEEcCCChhHHHHHHHHHhcccCCCCCCeEEEEEecccchhhhhhhHhhhhhhccCCccceEEeCCHHHHhCCC
Q 019990 3 KNPLRVLVTGAAGQIGYALVPMIARGIMLGPDQPVILHMLDIEPAAEALNGVKMELIDAAFPLLKGVVATTDVVEACKDV 82 (332)
Q Consensus 3 ~~~~kI~VtGaaG~IGs~l~~~L~~~~~~~~~~~~~i~l~D~~~~~~~~~~~~~dl~~~~~~~~~~v~~~~~~~~a~~~a 82 (332)
+..+||+|+|.+|-+|..++..|.+.. + .+|+.+|... + ...+..+.+++|
T Consensus 2 ~~~~~I~IIGl~GliGgslA~alk~~~--~----~~V~g~D~~d--~---------------------~~~~~~~~v~~a 52 (370)
T PRK08818 2 IAQPVVGIVGSAGAYGRWLARFLRTRM--Q----LEVIGHDPAD--P---------------------GSLDPATLLQRA 52 (370)
T ss_pred CCCCEEEEECCCCHHHHHHHHHHHhcC--C----CEEEEEcCCc--c---------------------ccCCHHHHhcCC
Confidence 456799999966999999999998641 1 2788888631 0 012445678899
Q ss_pred cEEEEec
Q 019990 83 NIAVMVG 89 (332)
Q Consensus 83 DiVi~~a 89 (332)
|+||++.
T Consensus 53 DlVilav 59 (370)
T PRK08818 53 DVLIFSA 59 (370)
T ss_pred CEEEEeC
Confidence 9999974
|
|
| >PRK03659 glutathione-regulated potassium-efflux system protein KefB; Provisional | Back alignment and domain information |
|---|
Probab=95.56 E-value=0.12 Score=52.33 Aligned_cols=140 Identities=14% Similarity=0.142 Sum_probs=80.3
Q ss_pred CcEEEEEcCCChhHHHHHHHHHhcccCCCCCCeEEEEEecccchhhhhhhHhhhhhhccC-CccceEEeCCHHHH-hCCC
Q 019990 5 PLRVLVTGAAGQIGYALVPMIARGIMLGPDQPVILHMLDIEPAAEALNGVKMELIDAAFP-LLKGVVATTDVVEA-CKDV 82 (332)
Q Consensus 5 ~~kI~VtGaaG~IGs~l~~~L~~~~~~~~~~~~~i~l~D~~~~~~~~~~~~~dl~~~~~~-~~~~v~~~~~~~~a-~~~a 82 (332)
..+|.|+| .|.+|++++..|.+.++ +++++|.++ ++.+ .+.+...+ +.+|.+..+-++++ +.+|
T Consensus 400 ~~~vII~G-~Gr~G~~va~~L~~~g~-------~vvvID~d~--~~v~----~~~~~g~~v~~GDat~~~~L~~agi~~A 465 (601)
T PRK03659 400 KPQVIIVG-FGRFGQVIGRLLMANKM-------RITVLERDI--SAVN----LMRKYGYKVYYGDATQLELLRAAGAEKA 465 (601)
T ss_pred cCCEEEec-CchHHHHHHHHHHhCCC-------CEEEEECCH--HHHH----HHHhCCCeEEEeeCCCHHHHHhcCCccC
Confidence 35899999 79999999999988776 799999864 2222 22222111 12344333333333 5689
Q ss_pred cEEEEecCCCCCCCCChhHHHhhhHHHHHHHHHHHHhhcCCCcEEEEEe-CChhhHHHHHHHHCCCCCCCcEEEeecccH
Q 019990 83 NIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEKHAAPNCKVLVVA-NPANTNALILKEFAPSIPAKNITCLTRLDH 161 (332)
Q Consensus 83 DiVi~~ag~~~~~~~~~~~~~~~N~~~~~~i~~~i~~~~~~~~~viv~s-np~~~~~~~~~~~~~~~~~~~i~~~t~l~~ 161 (332)
|.||.+-+. + ..|. .++..+++.. |+.+++.-+ |+.+ ...+.+ ...+.++--+...+
T Consensus 466 ~~vv~~~~d------~-----~~n~----~i~~~~r~~~-p~~~IiaRa~~~~~--~~~L~~----~Ga~~vv~e~~es~ 523 (601)
T PRK03659 466 EAIVITCNE------P-----EDTM----KIVELCQQHF-PHLHILARARGRVE--AHELLQ----AGVTQFSRETFSSA 523 (601)
T ss_pred CEEEEEeCC------H-----HHHH----HHHHHHHHHC-CCCeEEEEeCCHHH--HHHHHh----CCCCEEEccHHHHH
Confidence 998887321 1 2233 3455677775 777766544 4433 233343 22333444444445
Q ss_pred HHHHHHHHHHcCCCCCCee
Q 019990 162 NRAMGQISERLKVHVSDVK 180 (332)
Q Consensus 162 ~r~~~~~a~~~~v~~~~v~ 180 (332)
.++....-+.+|+++..++
T Consensus 524 l~l~~~~L~~lg~~~~~~~ 542 (601)
T PRK03659 524 LELGRKTLVSLGMHPHQAQ 542 (601)
T ss_pred HHHHHHHHHHcCCCHHHHH
Confidence 5555555566777766654
|
|
| >COG0287 TyrA Prephenate dehydrogenase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=95.56 E-value=0.12 Score=46.88 Aligned_cols=68 Identities=18% Similarity=0.370 Sum_probs=42.1
Q ss_pred CcEEEEEcCCChhHHHHHHHHHhcccCCCCCCeEEEEEecccchhhhh-hhHhhhhhhccCCccceEEeCCH-HHHhCCC
Q 019990 5 PLRVLVTGAAGQIGYALVPMIARGIMLGPDQPVILHMLDIEPAAEALN-GVKMELIDAAFPLLKGVVATTDV-VEACKDV 82 (332)
Q Consensus 5 ~~kI~VtGaaG~IGs~l~~~L~~~~~~~~~~~~~i~l~D~~~~~~~~~-~~~~dl~~~~~~~~~~v~~~~~~-~~a~~~a 82 (332)
+++|+|+| .|.+|..++..|...++ .+.+++.+.+...+. +...++.+ ....+. .++.+++
T Consensus 3 ~~~v~IvG-~GliG~s~a~~l~~~g~-------~v~i~g~d~~~~~~~~a~~lgv~d---------~~~~~~~~~~~~~a 65 (279)
T COG0287 3 SMKVGIVG-LGLMGGSLARALKEAGL-------VVRIIGRDRSAATLKAALELGVID---------ELTVAGLAEAAAEA 65 (279)
T ss_pred CcEEEEEC-CchHHHHHHHHHHHcCC-------eEEEEeecCcHHHHHHHhhcCccc---------ccccchhhhhcccC
Confidence 56899999 89999999999999886 555666543221111 11111111 111222 5667889
Q ss_pred cEEEEec
Q 019990 83 NIAVMVG 89 (332)
Q Consensus 83 DiVi~~a 89 (332)
|+||++.
T Consensus 66 D~Vivav 72 (279)
T COG0287 66 DLVIVAV 72 (279)
T ss_pred CEEEEec
Confidence 9999873
|
|
| >PF03949 Malic_M: Malic enzyme, NAD binding domain; InterPro: IPR012302 Malic enzymes (malate oxidoreductases) catalyse the oxidative decarboxylation of malate to form pyruvate [], a reaction important in a number of metabolic pathways - e | Back alignment and domain information |
|---|
Probab=95.55 E-value=0.021 Score=50.76 Aligned_cols=112 Identities=16% Similarity=0.234 Sum_probs=65.0
Q ss_pred CcEEEEEcCCChhHHHHHHHHHhc----ccCCCCCCeEEEEEecccchhhhhhhHhhhhhhccCCc---cceEEeCCHHH
Q 019990 5 PLRVLVTGAAGQIGYALVPMIARG----IMLGPDQPVILHMLDIEPAAEALNGVKMELIDAAFPLL---KGVVATTDVVE 77 (332)
Q Consensus 5 ~~kI~VtGaaG~IGs~l~~~L~~~----~~~~~~~~~~i~l~D~~~~~~~~~~~~~dl~~~~~~~~---~~v~~~~~~~~ 77 (332)
..||++.| +|..|-.++..|... |+...+-..++.++|.+. .+.....|+.+...++. .......++.+
T Consensus 25 d~riv~~G-AGsAg~gia~ll~~~~~~~G~~~~eA~~~i~lvD~~G---ll~~~r~~l~~~~~~~a~~~~~~~~~~~L~e 100 (255)
T PF03949_consen 25 DQRIVFFG-AGSAGIGIARLLVAAMVREGLSEEEARKRIWLVDSKG---LLTDDREDLNPHKKPFARKTNPEKDWGSLLE 100 (255)
T ss_dssp G-EEEEEB--SHHHHHHHHHHHHHHHCTTS-HHHHHTTEEEEETTE---EEBTTTSSHSHHHHHHHBSSSTTT--SSHHH
T ss_pred HcEEEEeC-CChhHHHHHHHHHHHHHHhcCCHHHHhccEEEEeccc---eEeccCccCChhhhhhhccCcccccccCHHH
Confidence 35899999 699999999988765 652000012799999764 12211223322111111 11111258899
Q ss_pred HhCCC--cEEEEecCCCCCCCCChhHHHhhhHHHHHHHHHHHHhhcCCCcEEEEEeCChh
Q 019990 78 ACKDV--NIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEKHAAPNCKVLVVANPAN 135 (332)
Q Consensus 78 a~~~a--DiVi~~ag~~~~~~~~~~~~~~~N~~~~~~i~~~i~~~~~~~~~viv~snp~~ 135 (332)
+++++ |++|=+.+.+.. ..+++++.+.+++ +..+|+-.|||..
T Consensus 101 av~~~kPtvLIG~S~~~g~--------------ft~evv~~Ma~~~-erPIIF~LSNPt~ 145 (255)
T PF03949_consen 101 AVKGAKPTVLIGLSGQGGA--------------FTEEVVRAMAKHN-ERPIIFPLSNPTP 145 (255)
T ss_dssp HHHCH--SEEEECSSSTTS--------------S-HHHHHHCHHHS-SSEEEEE-SSSCG
T ss_pred HHHhcCCCEEEEecCCCCc--------------CCHHHHHHHhccC-CCCEEEECCCCCC
Confidence 99988 998876553321 1357778888886 5656777899964
|
g. carbon dioxide released from the reaction may be used in sugar production during the Calvin cycle of photosynthesis []. There are 3 forms of the enzyme []: an NAD-dependent form that decarboxylates oxaloacetate; an NAD-dependent form that does not decarboxylate oxalo-acetate; and an NADPH-dependent form []. Other proteins known to be similar to malic enzymes are the Escherichia coli scfA protein; an enzyme from Zea mays (Maize), formerly thought to be cinnamyl-alcohol dehydrogenase []; and the hypothetical Saccharomyces cerevisiae protein YKL029c. Studies on the duck liver malic enzyme reveals that it can be alkylated by bromopyruvate, resulting in the loss of oxidative decarboxylation and the subsequent enhancement of pyruvate reductase activity []. The alkylated form is able to bind NADPH but not L-malate, indicating impaired substrate-or divalent metal ion-binding in the active site []. Sequence analysis has highlighted a cysteine residue as the point of alkylation, suggesting that it may play an important role in the activity of the enzyme [], although it is absent in the sequences from some species. There are three well conserved regions in the enzyme sequences. Two of them seem to be involved in the binding NAD or NADP. The significance of the third one, located in the central part of the enzymes, is not yet known.; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 2DVM_B 1WW8_A 3NV9_A 1PJ2_A 1PJL_B 1GZ3_A 1PJ4_A 1PJ3_C 1EFL_A 1EFK_B .... |
| >PRK06476 pyrroline-5-carboxylate reductase; Reviewed | Back alignment and domain information |
|---|
Probab=95.54 E-value=0.05 Score=48.78 Aligned_cols=69 Identities=12% Similarity=0.108 Sum_probs=44.2
Q ss_pred cEEEEEcCCChhHHHHHHHHHhcccCCCCCCeEEEEEecccchhhhhhhHhhhhhhccCCccceEEeCCHHHHhCCCcEE
Q 019990 6 LRVLVTGAAGQIGYALVPMIARGIMLGPDQPVILHMLDIEPAAEALNGVKMELIDAAFPLLKGVVATTDVVEACKDVNIA 85 (332)
Q Consensus 6 ~kI~VtGaaG~IGs~l~~~L~~~~~~~~~~~~~i~l~D~~~~~~~~~~~~~dl~~~~~~~~~~v~~~~~~~~a~~~aDiV 85 (332)
|||+|+| +|.+|++++..|.+.++. ...+.++|++. ++.. .+... + ..+....+..+.++++|+|
T Consensus 1 m~IgiIG-~G~mG~aia~~L~~~g~~----~~~i~v~~r~~--~~~~----~l~~~---~-~~~~~~~~~~~~~~~aDvV 65 (258)
T PRK06476 1 MKIGFIG-TGAITEAMVTGLLTSPAD----VSEIIVSPRNA--QIAA----RLAER---F-PKVRIAKDNQAVVDRSDVV 65 (258)
T ss_pred CeEEEEC-cCHHHHHHHHHHHhCCCC----hheEEEECCCH--HHHH----HHHHH---c-CCceEeCCHHHHHHhCCEE
Confidence 3799999 799999999999887641 12566777642 2222 12111 0 1133345666777899999
Q ss_pred EEec
Q 019990 86 VMVG 89 (332)
Q Consensus 86 i~~a 89 (332)
|++.
T Consensus 66 ilav 69 (258)
T PRK06476 66 FLAV 69 (258)
T ss_pred EEEe
Confidence 9874
|
|
| >PRK06407 ornithine cyclodeaminase; Provisional | Back alignment and domain information |
|---|
Probab=95.51 E-value=0.092 Score=48.30 Aligned_cols=75 Identities=8% Similarity=0.026 Sum_probs=52.6
Q ss_pred CCcEEEEEcCCChhHHHHHHHHHhcccCCCCCCeEEEEEecccchhhhhhhHhhhhhhccCCccceEEeCCHHHHhCCCc
Q 019990 4 NPLRVLVTGAAGQIGYALVPMIARGIMLGPDQPVILHMLDIEPAAEALNGVKMELIDAAFPLLKGVVATTDVVEACKDVN 83 (332)
Q Consensus 4 ~~~kI~VtGaaG~IGs~l~~~L~~~~~~~~~~~~~i~l~D~~~~~~~~~~~~~dl~~~~~~~~~~v~~~~~~~~a~~~aD 83 (332)
+..+++|+| +|..|.+.+..+..-.-+ .+|+++|++. ++......++.+. ...++....+..+++++||
T Consensus 116 da~~l~iiG-aG~QA~~~~~a~~~v~~i-----~~v~v~~r~~--~~a~~f~~~~~~~---~~~~v~~~~~~~eav~~aD 184 (301)
T PRK06407 116 NVENFTIIG-SGFQAETQLEGMASVYNP-----KRIRVYSRNF--DHARAFAERFSKE---FGVDIRPVDNAEAALRDAD 184 (301)
T ss_pred CCcEEEEEC-CcHHHHHHHHHHHhcCCC-----CEEEEECCCH--HHHHHHHHHHHHh---cCCcEEEeCCHHHHHhcCC
Confidence 467899999 799999888877764322 3899999864 3455554444431 1224666678899999999
Q ss_pred EEEEec
Q 019990 84 IAVMVG 89 (332)
Q Consensus 84 iVi~~a 89 (332)
+|+.+-
T Consensus 185 IV~taT 190 (301)
T PRK06407 185 TITSIT 190 (301)
T ss_pred EEEEec
Confidence 998653
|
|
| >PRK08618 ornithine cyclodeaminase; Validated | Back alignment and domain information |
|---|
Probab=95.48 E-value=0.092 Score=48.84 Aligned_cols=74 Identities=12% Similarity=0.118 Sum_probs=49.0
Q ss_pred CCcEEEEEcCCChhHHHHHHHHHh-cccCCCCCCeEEEEEecccchhhhhhhHhhhhhhccCCccceEEeCCHHHHhCCC
Q 019990 4 NPLRVLVTGAAGQIGYALVPMIAR-GIMLGPDQPVILHMLDIEPAAEALNGVKMELIDAAFPLLKGVVATTDVVEACKDV 82 (332)
Q Consensus 4 ~~~kI~VtGaaG~IGs~l~~~L~~-~~~~~~~~~~~i~l~D~~~~~~~~~~~~~dl~~~~~~~~~~v~~~~~~~~a~~~a 82 (332)
...+++|+| +|.+|...+..++. .+. .+|.++|++. ++......++.+. +...+....+..++++++
T Consensus 126 ~~~~v~iiG-aG~~a~~~~~al~~~~~~------~~v~v~~r~~--~~a~~~~~~~~~~---~~~~~~~~~~~~~~~~~a 193 (325)
T PRK08618 126 DAKTLCLIG-TGGQAKGQLEAVLAVRDI------ERVRVYSRTF--EKAYAFAQEIQSK---FNTEIYVVNSADEAIEEA 193 (325)
T ss_pred CCcEEEEEC-CcHHHHHHHHHHHhcCCc------cEEEEECCCH--HHHHHHHHHHHHh---cCCcEEEeCCHHHHHhcC
Confidence 457899999 79999888776654 332 3899999864 3444333333321 112344456778889999
Q ss_pred cEEEEec
Q 019990 83 NIAVMVG 89 (332)
Q Consensus 83 DiVi~~a 89 (332)
|+|+.+-
T Consensus 194 DiVi~aT 200 (325)
T PRK08618 194 DIIVTVT 200 (325)
T ss_pred CEEEEcc
Confidence 9999764
|
|
| >PRK07688 thiamine/molybdopterin biosynthesis ThiF/MoeB-like protein; Validated | Back alignment and domain information |
|---|
Probab=95.48 E-value=0.056 Score=50.56 Aligned_cols=34 Identities=32% Similarity=0.536 Sum_probs=29.8
Q ss_pred CcEEEEEcCCChhHHHHHHHHHhcccCCCCCCeEEEEEecc
Q 019990 5 PLRVLVTGAAGQIGYALVPMIARGIMLGPDQPVILHMLDIE 45 (332)
Q Consensus 5 ~~kI~VtGaaG~IGs~l~~~L~~~~~~~~~~~~~i~l~D~~ 45 (332)
..||+|+| +|.+|++++..|...|+ + ++.++|.+
T Consensus 24 ~~~VlVvG-~GglGs~va~~La~aGv-g-----~i~lvD~D 57 (339)
T PRK07688 24 EKHVLIIG-AGALGTANAEMLVRAGV-G-----KVTIVDRD 57 (339)
T ss_pred CCcEEEEC-CCHHHHHHHHHHHHcCC-C-----eEEEEeCC
Confidence 56899999 69999999999998885 2 89999975
|
|
| >COG2084 MmsB 3-hydroxyisobutyrate dehydrogenase and related beta-hydroxyacid dehydrogenases [Lipid metabolism] | Back alignment and domain information |
|---|
Probab=95.45 E-value=0.054 Score=49.18 Aligned_cols=65 Identities=14% Similarity=0.266 Sum_probs=47.4
Q ss_pred cEEEEEcCCChhHHHHHHHHHhcccCCCCCCeEEEEEecccchhhhhhhHhhhhhhccCCccceEEeCCHHHHhCCCcEE
Q 019990 6 LRVLVTGAAGQIGYALVPMIARGIMLGPDQPVILHMLDIEPAAEALNGVKMELIDAAFPLLKGVVATTDVVEACKDVNIA 85 (332)
Q Consensus 6 ~kI~VtGaaG~IGs~l~~~L~~~~~~~~~~~~~i~l~D~~~~~~~~~~~~~dl~~~~~~~~~~v~~~~~~~~a~~~aDiV 85 (332)
+||++|| .|..|+.++.+|+..|+ +++++|++.. +. ...+... ......+..++.+++|+|
T Consensus 1 ~kIafIG-LG~MG~pmA~~L~~aG~-------~v~v~~r~~~--ka---~~~~~~~------Ga~~a~s~~eaa~~aDvV 61 (286)
T COG2084 1 MKIAFIG-LGIMGSPMAANLLKAGH-------EVTVYNRTPE--KA---AELLAAA------GATVAASPAEAAAEADVV 61 (286)
T ss_pred CeEEEEc-CchhhHHHHHHHHHCCC-------EEEEEeCChh--hh---hHHHHHc------CCcccCCHHHHHHhCCEE
Confidence 4899999 89999999999999997 8999998642 21 1112111 122334567889999999
Q ss_pred EEec
Q 019990 86 VMVG 89 (332)
Q Consensus 86 i~~a 89 (332)
|.+-
T Consensus 62 itmv 65 (286)
T COG2084 62 ITML 65 (286)
T ss_pred EEec
Confidence 9975
|
|
| >cd05213 NAD_bind_Glutamyl_tRNA_reduct NADP-binding domain of glutamyl-tRNA reductase | Back alignment and domain information |
|---|
Probab=95.45 E-value=0.05 Score=50.29 Aligned_cols=73 Identities=21% Similarity=0.291 Sum_probs=48.2
Q ss_pred CCcEEEEEcCCChhHHHHHHHHHhcccCCCCCCeEEEEEecccchhhhhhhHhhhhhhccCCccceEEeCCHHHHhCCCc
Q 019990 4 NPLRVLVTGAAGQIGYALVPMIARGIMLGPDQPVILHMLDIEPAAEALNGVKMELIDAAFPLLKGVVATTDVVEACKDVN 83 (332)
Q Consensus 4 ~~~kI~VtGaaG~IGs~l~~~L~~~~~~~~~~~~~i~l~D~~~~~~~~~~~~~dl~~~~~~~~~~v~~~~~~~~a~~~aD 83 (332)
..++|+|+| +|.+|..++..|...+. .+|.++|++. ++.......+. ..+....++.+++.++|
T Consensus 177 ~~~~V~ViG-aG~iG~~~a~~L~~~g~------~~V~v~~r~~--~ra~~la~~~g-------~~~~~~~~~~~~l~~aD 240 (311)
T cd05213 177 KGKKVLVIG-AGEMGELAAKHLAAKGV------AEITIANRTY--ERAEELAKELG-------GNAVPLDELLELLNEAD 240 (311)
T ss_pred cCCEEEEEC-cHHHHHHHHHHHHHcCC------CEEEEEeCCH--HHHHHHHHHcC-------CeEEeHHHHHHHHhcCC
Confidence 468999999 69999999999987553 2789999853 22222222111 12222235667788999
Q ss_pred EEEEecCCC
Q 019990 84 IAVMVGGFP 92 (332)
Q Consensus 84 iVi~~ag~~ 92 (332)
+||.+.+.+
T Consensus 241 vVi~at~~~ 249 (311)
T cd05213 241 VVISATGAP 249 (311)
T ss_pred EEEECCCCC
Confidence 999986644
|
Glutamyl-tRNA reductase catalyzes the conversion of glutamyl-tRNA to glutamate-1-semialdehyde, initiating the synthesis of tetrapyrrole. Whereas tRNAs are generally associated with peptide bond formation in protein translation, here the tRNA activates glutamate in the initiation of tetrapyrrole biosynthesis in archaea, plants and many bacteria. In the first step, activated glutamate is reduced to glutamate-1-semi-aldehyde via the NADPH dependent glutamyl-tRNA reductase. Glutamyl-tRNA reductase forms a V-shaped dimer. Each monomer has 3 domains: an N-terminal catalytic domain, a classic nucleotide binding domain, and a C-terminal dimerization domain. Although the representative structure 1GPJ lacks a bound NADPH, a theoretical binding pocket has been described. (PMID 11172694). Amino acid dehydrogenase (DH)-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, |
| >PRK08291 ectoine utilization protein EutC; Validated | Back alignment and domain information |
|---|
Probab=95.45 E-value=0.1 Score=48.62 Aligned_cols=75 Identities=19% Similarity=0.164 Sum_probs=50.1
Q ss_pred CCcEEEEEcCCChhHHHHHHHHHh-cccCCCCCCeEEEEEecccchhhhhhhHhhhhhhccCCccceEEeCCHHHHhCCC
Q 019990 4 NPLRVLVTGAAGQIGYALVPMIAR-GIMLGPDQPVILHMLDIEPAAEALNGVKMELIDAAFPLLKGVVATTDVVEACKDV 82 (332)
Q Consensus 4 ~~~kI~VtGaaG~IGs~l~~~L~~-~~~~~~~~~~~i~l~D~~~~~~~~~~~~~dl~~~~~~~~~~v~~~~~~~~a~~~a 82 (332)
+.++|+|+| +|..|...+..+.. .+. .++.+++++. ++++....++.+. +...+....++.++++++
T Consensus 131 ~~~~v~IiG-aG~~a~~~~~al~~~~~~------~~V~v~~R~~--~~a~~l~~~~~~~---~g~~v~~~~d~~~al~~a 198 (330)
T PRK08291 131 DASRAAVIG-AGEQARLQLEALTLVRPI------REVRVWARDA--AKAEAYAADLRAE---LGIPVTVARDVHEAVAGA 198 (330)
T ss_pred CCCEEEEEC-CCHHHHHHHHHHHhcCCC------CEEEEEcCCH--HHHHHHHHHHhhc---cCceEEEeCCHHHHHccC
Confidence 357899999 69999988887764 333 2899999863 3444444433321 112344456788889999
Q ss_pred cEEEEecC
Q 019990 83 NIAVMVGG 90 (332)
Q Consensus 83 DiVi~~ag 90 (332)
|+|+.+..
T Consensus 199 DiVi~aT~ 206 (330)
T PRK08291 199 DIIVTTTP 206 (330)
T ss_pred CEEEEeeC
Confidence 99987643
|
|
| >PRK00436 argC N-acetyl-gamma-glutamyl-phosphate reductase; Validated | Back alignment and domain information |
|---|
Probab=95.42 E-value=0.052 Score=50.92 Aligned_cols=25 Identities=24% Similarity=0.372 Sum_probs=21.9
Q ss_pred CcEEEEEcCCChhHHHHHHHHHhcc
Q 019990 5 PLRVLVTGAAGQIGYALVPMIARGI 29 (332)
Q Consensus 5 ~~kI~VtGaaG~IGs~l~~~L~~~~ 29 (332)
|+||+|+||+|.+|..++..|....
T Consensus 2 m~kVaIiGAtG~vG~~l~~~L~~~p 26 (343)
T PRK00436 2 MIKVGIVGASGYTGGELLRLLLNHP 26 (343)
T ss_pred CeEEEEECCCCHHHHHHHHHHHcCC
Confidence 4799999999999999999888653
|
|
| >cd01487 E1_ThiF_like E1_ThiF_like | Back alignment and domain information |
|---|
Probab=95.41 E-value=0.063 Score=45.21 Aligned_cols=33 Identities=30% Similarity=0.587 Sum_probs=28.3
Q ss_pred EEEEEcCCChhHHHHHHHHHhcccCCCCCCeEEEEEeccc
Q 019990 7 RVLVTGAAGQIGYALVPMIARGIMLGPDQPVILHMLDIEP 46 (332)
Q Consensus 7 kI~VtGaaG~IGs~l~~~L~~~~~~~~~~~~~i~l~D~~~ 46 (332)
||+|+| +|.+|+.++..|...|+ + +++++|.+.
T Consensus 1 ~VlViG-~GglGs~ia~~La~~Gv-g-----~i~lvD~D~ 33 (174)
T cd01487 1 KVGIAG-AGGLGSNIAVLLARSGV-G-----NLKLVDFDV 33 (174)
T ss_pred CEEEEC-cCHHHHHHHHHHHHcCC-C-----eEEEEeCCE
Confidence 689999 79999999999998886 2 799999753
|
Member of superfamily of activating enzymes (E1) of the ubiquitin-like proteins. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown. |
| >PRK05579 bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate synthase; Validated | Back alignment and domain information |
|---|
Probab=95.40 E-value=0.031 Score=53.43 Aligned_cols=72 Identities=22% Similarity=0.274 Sum_probs=47.9
Q ss_pred CCcEEEEEcC----------------CChhHHHHHHHHHhcccCCCCCCeEEEEEecccchhhhhhhHhhhhhhccCCcc
Q 019990 4 NPLRVLVTGA----------------AGQIGYALVPMIARGIMLGPDQPVILHMLDIEPAAEALNGVKMELIDAAFPLLK 67 (332)
Q Consensus 4 ~~~kI~VtGa----------------aG~IGs~l~~~L~~~~~~~~~~~~~i~l~D~~~~~~~~~~~~~dl~~~~~~~~~ 67 (332)
+.++|+|||| +|.+|.+++..|...|. +|.+++.+.. +. .... ....
T Consensus 187 ~gk~vlITgG~T~E~ID~VR~isN~SSG~~G~aiA~~l~~~Ga-------~V~~v~~~~~---~~-----~~~~--~~~~ 249 (399)
T PRK05579 187 AGKRVLITAGPTREPIDPVRYITNRSSGKMGYALARAAARRGA-------DVTLVSGPVN---LP-----TPAG--VKRI 249 (399)
T ss_pred CCCEEEEeCCCccccccceeeeccCCcchHHHHHHHHHHHCCC-------EEEEeCCCcc---cc-----CCCC--cEEE
Confidence 3578999999 89999999999999885 8999986431 10 1100 0012
Q ss_pred ceEEeCCHHHH----hCCCcEEEEecCCC
Q 019990 68 GVVATTDVVEA----CKDVNIAVMVGGFP 92 (332)
Q Consensus 68 ~v~~~~~~~~a----~~~aDiVi~~ag~~ 92 (332)
+++...++.++ +.+.|++|+.||+.
T Consensus 250 dv~~~~~~~~~v~~~~~~~DilI~~Aav~ 278 (399)
T PRK05579 250 DVESAQEMLDAVLAALPQADIFIMAAAVA 278 (399)
T ss_pred ccCCHHHHHHHHHHhcCCCCEEEEccccc
Confidence 33333344433 45689999999975
|
|
| >TIGR02354 thiF_fam2 thiamine biosynthesis protein ThiF, family 2 | Back alignment and domain information |
|---|
Probab=95.40 E-value=0.06 Score=46.44 Aligned_cols=35 Identities=23% Similarity=0.356 Sum_probs=30.0
Q ss_pred CCcEEEEEcCCChhHHHHHHHHHhcccCCCCCCeEEEEEecc
Q 019990 4 NPLRVLVTGAAGQIGYALVPMIARGIMLGPDQPVILHMLDIE 45 (332)
Q Consensus 4 ~~~kI~VtGaaG~IGs~l~~~L~~~~~~~~~~~~~i~l~D~~ 45 (332)
...||+|+| +|.+|+.++..|...|+ .+++++|.+
T Consensus 20 ~~~~V~IvG-~GglGs~ia~~La~~Gv------g~i~lvD~D 54 (200)
T TIGR02354 20 EQATVAICG-LGGLGSNVAINLARAGI------GKLILVDFD 54 (200)
T ss_pred hCCcEEEEC-cCHHHHHHHHHHHHcCC------CEEEEECCC
Confidence 357899999 69999999999999886 279999976
|
Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with one the E. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the divergent clade of putative ThiF proteins such found in Campylobacter. |
| >PRK14194 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=95.40 E-value=0.063 Score=49.05 Aligned_cols=56 Identities=18% Similarity=0.364 Sum_probs=45.4
Q ss_pred CCcEEEEEcCCChhHHHHHHHHHhcccCCCCCCeEEEEEecccchhhhhhhHhhhhhhccCCccceEEeCCHHHHhCCCc
Q 019990 4 NPLRVLVTGAAGQIGYALVPMIARGIMLGPDQPVILHMLDIEPAAEALNGVKMELIDAAFPLLKGVVATTDVVEACKDVN 83 (332)
Q Consensus 4 ~~~kI~VtGaaG~IGs~l~~~L~~~~~~~~~~~~~i~l~D~~~~~~~~~~~~~dl~~~~~~~~~~v~~~~~~~~a~~~aD 83 (332)
..++|+|+|.+|.+|..++..|++.+. ++.+++... .++.+.++.||
T Consensus 158 ~Gk~V~vIG~s~ivG~PmA~~L~~~ga-------tVtv~~~~t--------------------------~~l~e~~~~AD 204 (301)
T PRK14194 158 TGKHAVVIGRSNIVGKPMAALLLQAHC-------SVTVVHSRS--------------------------TDAKALCRQAD 204 (301)
T ss_pred CCCEEEEECCCCccHHHHHHHHHHCCC-------EEEEECCCC--------------------------CCHHHHHhcCC
Confidence 467999999777999999999998875 888887532 14567788999
Q ss_pred EEEEecCCC
Q 019990 84 IAVMVGGFP 92 (332)
Q Consensus 84 iVi~~ag~~ 92 (332)
+||...|.+
T Consensus 205 IVIsavg~~ 213 (301)
T PRK14194 205 IVVAAVGRP 213 (301)
T ss_pred EEEEecCCh
Confidence 999988765
|
|
| >PRK14192 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=95.36 E-value=0.064 Score=48.81 Aligned_cols=56 Identities=18% Similarity=0.250 Sum_probs=42.3
Q ss_pred CCcEEEEEcCCChhHHHHHHHHHhcccCCCCCCeEEEEEecccchhhhhhhHhhhhhhccCCccceEEeCCHHHHhCCCc
Q 019990 4 NPLRVLVTGAAGQIGYALVPMIARGIMLGPDQPVILHMLDIEPAAEALNGVKMELIDAAFPLLKGVVATTDVVEACKDVN 83 (332)
Q Consensus 4 ~~~kI~VtGaaG~IGs~l~~~L~~~~~~~~~~~~~i~l~D~~~~~~~~~~~~~dl~~~~~~~~~~v~~~~~~~~a~~~aD 83 (332)
..++|+|+|++|.+|..++..|+..+. +|.+++... .++.+.++++|
T Consensus 158 ~Gk~vvViG~gg~vGkpia~~L~~~ga-------tVtv~~~~t--------------------------~~L~~~~~~aD 204 (283)
T PRK14192 158 AGKHAVVVGRSAILGKPMAMMLLNANA-------TVTICHSRT--------------------------QNLPELVKQAD 204 (283)
T ss_pred CCCEEEEECCcHHHHHHHHHHHHhCCC-------EEEEEeCCc--------------------------hhHHHHhccCC
Confidence 467999999766799999999988764 788887521 13445568999
Q ss_pred EEEEecCCC
Q 019990 84 IAVMVGGFP 92 (332)
Q Consensus 84 iVi~~ag~~ 92 (332)
+||.+.|.+
T Consensus 205 IvI~AtG~~ 213 (283)
T PRK14192 205 IIVGAVGKP 213 (283)
T ss_pred EEEEccCCC
Confidence 999988643
|
|
| >cd01080 NAD_bind_m-THF_DH_Cyclohyd NADP binding domain of methylene-tetrahydrofolate dehydrogenase/cyclohydrolase | Back alignment and domain information |
|---|
Probab=95.34 E-value=0.063 Score=44.92 Aligned_cols=55 Identities=18% Similarity=0.337 Sum_probs=41.6
Q ss_pred CCcEEEEEcCCCh-hHHHHHHHHHhcccCCCCCCeEEEEEecccchhhhhhhHhhhhhhccCCccceEEeCCHHHHhCCC
Q 019990 4 NPLRVLVTGAAGQ-IGYALVPMIARGIMLGPDQPVILHMLDIEPAAEALNGVKMELIDAAFPLLKGVVATTDVVEACKDV 82 (332)
Q Consensus 4 ~~~kI~VtGaaG~-IGs~l~~~L~~~~~~~~~~~~~i~l~D~~~~~~~~~~~~~dl~~~~~~~~~~v~~~~~~~~a~~~a 82 (332)
..++|+|+|+ |. +|..++..|...+. ++.++++.. .++.+.++++
T Consensus 43 ~gk~vlViG~-G~~~G~~~a~~L~~~g~-------~V~v~~r~~--------------------------~~l~~~l~~a 88 (168)
T cd01080 43 AGKKVVVVGR-SNIVGKPLAALLLNRNA-------TVTVCHSKT--------------------------KNLKEHTKQA 88 (168)
T ss_pred CCCEEEEECC-cHHHHHHHHHHHhhCCC-------EEEEEECCc--------------------------hhHHHHHhhC
Confidence 4689999995 75 69989999988774 677887531 2456678899
Q ss_pred cEEEEecCCC
Q 019990 83 NIAVMVGGFP 92 (332)
Q Consensus 83 DiVi~~ag~~ 92 (332)
|+||.+.+.+
T Consensus 89 DiVIsat~~~ 98 (168)
T cd01080 89 DIVIVAVGKP 98 (168)
T ss_pred CEEEEcCCCC
Confidence 9999887655
|
NADP binding domain of the Methylene-Tetrahydrofolate Dehydrogenase/cyclohydrolase (m-THF DH/cyclohydrolase) bifunctional enzyme. Tetrahydrofolate is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional DH/cyclodrolase form. In bacteria, monofucntional DH, as well a |
| >PF02423 OCD_Mu_crystall: Ornithine cyclodeaminase/mu-crystallin family; InterPro: IPR003462 This entry represents the bacterial ornithine cyclodeaminase enzyme family, which catalyse the deamination of ornithine to proline [] | Back alignment and domain information |
|---|
Probab=95.33 E-value=0.1 Score=48.29 Aligned_cols=73 Identities=23% Similarity=0.189 Sum_probs=47.8
Q ss_pred CCcEEEEEcCCChhHHHHHHHHHhcccCCCCCCeEEEEEecccchhhhhhhHhhhhhhccCCccceEEeCCHHHHhCCCc
Q 019990 4 NPLRVLVTGAAGQIGYALVPMIARGIMLGPDQPVILHMLDIEPAAEALNGVKMELIDAAFPLLKGVVATTDVVEACKDVN 83 (332)
Q Consensus 4 ~~~kI~VtGaaG~IGs~l~~~L~~~~~~~~~~~~~i~l~D~~~~~~~~~~~~~dl~~~~~~~~~~v~~~~~~~~a~~~aD 83 (332)
+..+++|+| +|..+.+.+..+..-.-+ .+|++++++. ++.+....++.+ ....+....+.++++++||
T Consensus 127 ~~~~l~viG-aG~QA~~~~~a~~~~~~i-----~~v~v~~r~~--~~~~~~~~~~~~----~~~~v~~~~~~~~av~~aD 194 (313)
T PF02423_consen 127 DARTLGVIG-AGVQARWHLRALAAVRPI-----KEVRVYSRSP--ERAEAFAARLRD----LGVPVVAVDSAEEAVRGAD 194 (313)
T ss_dssp T--EEEEE---SHHHHHHHHHHHHHS-------SEEEEE-SSH--HHHHHHHHHHHC----CCTCEEEESSHHHHHTTSS
T ss_pred CCceEEEEC-CCHHHHHHHHHHHHhCCc-----eEEEEEccCh--hHHHHHHHhhcc----ccccceeccchhhhcccCC
Confidence 457899999 799999988877653212 3899999864 345555555544 1345666788999999999
Q ss_pred EEEEe
Q 019990 84 IAVMV 88 (332)
Q Consensus 84 iVi~~ 88 (332)
+|+.+
T Consensus 195 ii~ta 199 (313)
T PF02423_consen 195 IIVTA 199 (313)
T ss_dssp EEEE-
T ss_pred EEEEc
Confidence 98864
|
The family also includes mu-crystallin, a mammalian homologue of bacterial ornithine cyclodeaminase [], which is the major component of the eye lens in several Australian marsupials. mRNA for mu-crystallin has also been found in human retina [].; PDB: 1U7H_B 1X7D_B 2I99_B 3HDJ_A 1VLL_B 1OMO_A. |
| >cd05212 NAD_bind_m-THF_DH_Cyclohyd_like NAD(P) binding domain of methylene-tetrahydrofolate dehydrogenase and methylene-tetrahydrofolate dehydrogenase/cyclohydrolase | Back alignment and domain information |
|---|
Probab=95.33 E-value=0.11 Score=42.15 Aligned_cols=56 Identities=21% Similarity=0.313 Sum_probs=44.6
Q ss_pred CCcEEEEEcCCChhHHHHHHHHHhcccCCCCCCeEEEEEecccchhhhhhhHhhhhhhccCCccceEEeCCHHHHhCCCc
Q 019990 4 NPLRVLVTGAAGQIGYALVPMIARGIMLGPDQPVILHMLDIEPAAEALNGVKMELIDAAFPLLKGVVATTDVVEACKDVN 83 (332)
Q Consensus 4 ~~~kI~VtGaaG~IGs~l~~~L~~~~~~~~~~~~~i~l~D~~~~~~~~~~~~~dl~~~~~~~~~~v~~~~~~~~a~~~aD 83 (332)
..++|+|+|.+..+|..++..|.+.+. ++.+++.+. .++.+++++||
T Consensus 27 ~gk~v~VvGrs~~vG~pla~lL~~~ga-------tV~~~~~~t--------------------------~~l~~~v~~AD 73 (140)
T cd05212 27 DGKKVLVVGRSGIVGAPLQCLLQRDGA-------TVYSCDWKT--------------------------IQLQSKVHDAD 73 (140)
T ss_pred CCCEEEEECCCchHHHHHHHHHHHCCC-------EEEEeCCCC--------------------------cCHHHHHhhCC
Confidence 467999999999999999999987764 777777531 24567789999
Q ss_pred EEEEecCCC
Q 019990 84 IAVMVGGFP 92 (332)
Q Consensus 84 iVi~~ag~~ 92 (332)
+||...|.+
T Consensus 74 IVvsAtg~~ 82 (140)
T cd05212 74 VVVVGSPKP 82 (140)
T ss_pred EEEEecCCC
Confidence 999988765
|
NAD(P) binding domains of methylene-tetrahydrofolate dehydrogenase (m-THF DH) and m-THF DH/cyclohydrolase bifunctional enzymes (m-THF DH/cyclohydrolase). M-THF is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional |
| >TIGR02992 ectoine_eutC ectoine utilization protein EutC | Back alignment and domain information |
|---|
Probab=95.32 E-value=0.11 Score=48.32 Aligned_cols=74 Identities=18% Similarity=0.142 Sum_probs=50.7
Q ss_pred CCcEEEEEcCCChhHHHHHHHHHh-cccCCCCCCeEEEEEecccchhhhhhhHhhhhhhccCCccceEEeCCHHHHhCCC
Q 019990 4 NPLRVLVTGAAGQIGYALVPMIAR-GIMLGPDQPVILHMLDIEPAAEALNGVKMELIDAAFPLLKGVVATTDVVEACKDV 82 (332)
Q Consensus 4 ~~~kI~VtGaaG~IGs~l~~~L~~-~~~~~~~~~~~i~l~D~~~~~~~~~~~~~dl~~~~~~~~~~v~~~~~~~~a~~~a 82 (332)
+..+++|+| +|..|...+..|.. .++ .+|.+++++. ++.+....++.+. +..++....++.++++++
T Consensus 128 ~~~~v~iiG-aG~qA~~~~~al~~~~~i------~~v~V~~R~~--~~a~~~a~~~~~~---~g~~v~~~~~~~~av~~a 195 (326)
T TIGR02992 128 DSSVVAIFG-AGMQARLQLEALTLVRDI------RSARIWARDS--AKAEALALQLSSL---LGIDVTAATDPRAAMSGA 195 (326)
T ss_pred CCcEEEEEC-CCHHHHHHHHHHHHhCCc------cEEEEECCCH--HHHHHHHHHHHhh---cCceEEEeCCHHHHhccC
Confidence 356899999 79999999988864 443 2799999864 3444444444321 112344456788889999
Q ss_pred cEEEEec
Q 019990 83 NIAVMVG 89 (332)
Q Consensus 83 DiVi~~a 89 (332)
|+|+.+-
T Consensus 196 DiVvtaT 202 (326)
T TIGR02992 196 DIIVTTT 202 (326)
T ss_pred CEEEEec
Confidence 9999874
|
Members of this protein family are EutA, a predicted arylmalonate decarboxylase found in a conserved ectoine utilization operon of species that include Sinorhizobium meliloti 1021 (where it is known to be induced by ectoine), Mesorhizobium loti, Silicibacter pomeroyi, Agrobacterium tumefaciens, and Pseudomonas putida. This family belongs to the ornithine cyclodeaminase/mu-crystallin family (pfam02423). |
| >PLN02256 arogenate dehydrogenase | Back alignment and domain information |
|---|
Probab=95.31 E-value=0.086 Score=48.55 Aligned_cols=65 Identities=17% Similarity=0.266 Sum_probs=43.4
Q ss_pred CCcEEEEEcCCChhHHHHHHHHHhcccCCCCCCeEEEEEecccchhhhhhhHhhhhhhccCCccceEEeCCHHHHh-CCC
Q 019990 4 NPLRVLVTGAAGQIGYALVPMIARGIMLGPDQPVILHMLDIEPAAEALNGVKMELIDAAFPLLKGVVATTDVVEAC-KDV 82 (332)
Q Consensus 4 ~~~kI~VtGaaG~IGs~l~~~L~~~~~~~~~~~~~i~l~D~~~~~~~~~~~~~dl~~~~~~~~~~v~~~~~~~~a~-~~a 82 (332)
.++||+|+| .|.+|+.++..|.+.+. +|..+|.+.. .....++ .+....+..+.+ .++
T Consensus 35 ~~~kI~IIG-~G~mG~slA~~L~~~G~-------~V~~~d~~~~----~~~a~~~---------gv~~~~~~~e~~~~~a 93 (304)
T PLN02256 35 RKLKIGIVG-FGNFGQFLAKTFVKQGH-------TVLATSRSDY----SDIAAEL---------GVSFFRDPDDFCEEHP 93 (304)
T ss_pred CCCEEEEEe-eCHHHHHHHHHHHhCCC-------EEEEEECccH----HHHHHHc---------CCeeeCCHHHHhhCCC
Confidence 457999999 79999999999987664 7888997531 1111111 112234555555 479
Q ss_pred cEEEEec
Q 019990 83 NIAVMVG 89 (332)
Q Consensus 83 DiVi~~a 89 (332)
|+||++.
T Consensus 94 DvVilav 100 (304)
T PLN02256 94 DVVLLCT 100 (304)
T ss_pred CEEEEec
Confidence 9999974
|
|
| >TIGR01850 argC N-acetyl-gamma-glutamyl-phosphate reductase, common form | Back alignment and domain information |
|---|
Probab=95.29 E-value=0.068 Score=50.16 Aligned_cols=34 Identities=21% Similarity=0.377 Sum_probs=26.5
Q ss_pred cEEEEEcCCChhHHHHHHHHHhcccCCCCCCeEEE-EEecc
Q 019990 6 LRVLVTGAAGQIGYALVPMIARGIMLGPDQPVILH-MLDIE 45 (332)
Q Consensus 6 ~kI~VtGaaG~IGs~l~~~L~~~~~~~~~~~~~i~-l~D~~ 45 (332)
+||+|+||+|.+|..++..|.+... .+++ +++.+
T Consensus 1 ~kVaIiGATG~vG~ellr~L~~hP~------~el~~l~~s~ 35 (346)
T TIGR01850 1 IKVAIVGASGYTGGELLRLLLNHPE------VEITYLVSSR 35 (346)
T ss_pred CEEEEECCCCHHHHHHHHHHHcCCC------ceEEEEeccc
Confidence 4899999999999999999886533 2666 55653
|
This model represents the more common of two related families of N-acetyl-gamma-glutamyl-phosphate reductase, an enzyme catalyzing the third step or Arg biosynthesis from Glu. The two families differ by phylogeny, similarity clustering, and the gap architecture in a multiple sequence alignment. Bacterial members of this family tend to be found within Arg biosynthesis operons. |
| >PRK05479 ketol-acid reductoisomerase; Provisional | Back alignment and domain information |
|---|
Probab=95.27 E-value=0.061 Score=49.95 Aligned_cols=66 Identities=17% Similarity=0.050 Sum_probs=44.7
Q ss_pred CCcEEEEEcCCChhHHHHHHHHHhcccCCCCCCeEEEEEecccchhhhhhhHhhhhhhccCCccceEEeCCHHHHhCCCc
Q 019990 4 NPLRVLVTGAAGQIGYALVPMIARGIMLGPDQPVILHMLDIEPAAEALNGVKMELIDAAFPLLKGVVATTDVVEACKDVN 83 (332)
Q Consensus 4 ~~~kI~VtGaaG~IGs~l~~~L~~~~~~~~~~~~~i~l~D~~~~~~~~~~~~~dl~~~~~~~~~~v~~~~~~~~a~~~aD 83 (332)
+.++|+|+| .|.+|.+++..|...++ +++..+.... ....... .. .+.. .+..+++++||
T Consensus 16 ~gktIgIIG-~GsmG~AlA~~L~~sG~-------~Vvv~~r~~~--~s~~~A~---~~------G~~~-~s~~eaa~~AD 75 (330)
T PRK05479 16 KGKKVAIIG-YGSQGHAHALNLRDSGV-------DVVVGLREGS--KSWKKAE---AD------GFEV-LTVAEAAKWAD 75 (330)
T ss_pred CCCEEEEEe-eHHHHHHHHHHHHHCCC-------EEEEEECCch--hhHHHHH---HC------CCee-CCHHHHHhcCC
Confidence 457899999 79999999999998775 6777765421 1111111 10 1222 36678899999
Q ss_pred EEEEec
Q 019990 84 IAVMVG 89 (332)
Q Consensus 84 iVi~~a 89 (332)
+|+++.
T Consensus 76 VVvLaV 81 (330)
T PRK05479 76 VIMILL 81 (330)
T ss_pred EEEEcC
Confidence 999874
|
|
| >PRK07340 ornithine cyclodeaminase; Validated | Back alignment and domain information |
|---|
Probab=95.26 E-value=0.091 Score=48.40 Aligned_cols=73 Identities=12% Similarity=-0.002 Sum_probs=49.8
Q ss_pred CCcEEEEEcCCChhHHHHHHHHHh-cccCCCCCCeEEEEEecccchhhhhhhHhhhhhhccCCccceEEeCCHHHHhCCC
Q 019990 4 NPLRVLVTGAAGQIGYALVPMIAR-GIMLGPDQPVILHMLDIEPAAEALNGVKMELIDAAFPLLKGVVATTDVVEACKDV 82 (332)
Q Consensus 4 ~~~kI~VtGaaG~IGs~l~~~L~~-~~~~~~~~~~~i~l~D~~~~~~~~~~~~~dl~~~~~~~~~~v~~~~~~~~a~~~a 82 (332)
+.++++|+| +|..|...+..+.. .+. .++.++|++. ++.......+... ...+. ..+..+++.++
T Consensus 124 ~~~~v~IiG-aG~qa~~~~~al~~~~~~------~~v~v~~r~~--~~a~~~a~~~~~~----~~~~~-~~~~~~av~~a 189 (304)
T PRK07340 124 PPGDLLLIG-TGVQARAHLEAFAAGLPV------RRVWVRGRTA--ASAAAFCAHARAL----GPTAE-PLDGEAIPEAV 189 (304)
T ss_pred CCCEEEEEC-CcHHHHHHHHHHHHhCCC------CEEEEEcCCH--HHHHHHHHHHHhc----CCeeE-ECCHHHHhhcC
Confidence 457899999 79999999998875 333 2899999864 3444444444321 11222 35677889999
Q ss_pred cEEEEecC
Q 019990 83 NIAVMVGG 90 (332)
Q Consensus 83 DiVi~~ag 90 (332)
|+||.+-.
T Consensus 190 DiVitaT~ 197 (304)
T PRK07340 190 DLVVTATT 197 (304)
T ss_pred CEEEEccC
Confidence 99998643
|
|
| >PRK06545 prephenate dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=95.23 E-value=0.063 Score=50.66 Aligned_cols=68 Identities=24% Similarity=0.358 Sum_probs=43.8
Q ss_pred cEEEEEcCCChhHHHHHHHHHhcccCCCCCCeEEEEEecccchhhhhhhHhhhhhhccCCccceEEeCCHHHHhCCCcEE
Q 019990 6 LRVLVTGAAGQIGYALVPMIARGIMLGPDQPVILHMLDIEPAAEALNGVKMELIDAAFPLLKGVVATTDVVEACKDVNIA 85 (332)
Q Consensus 6 ~kI~VtGaaG~IGs~l~~~L~~~~~~~~~~~~~i~l~D~~~~~~~~~~~~~dl~~~~~~~~~~v~~~~~~~~a~~~aDiV 85 (332)
+||+|+| .|.+|.+++..|...++ ++.++|.+....... ... . ..... ...+++.+++++||+|
T Consensus 1 ~~I~iIG-~GliG~siA~~L~~~G~-------~v~i~~~~~~~~~~~---~a~-~--~~~~~--~~~~~~~~~~~~aDlV 64 (359)
T PRK06545 1 RTVLIVG-LGLIGGSLALAIKAAGP-------DVFIIGYDPSAAQLA---RAL-G--FGVID--ELAADLQRAAAEADLI 64 (359)
T ss_pred CeEEEEE-eCHHHHHHHHHHHhcCC-------CeEEEEeCCCHHHHH---HHh-c--CCCCc--ccccCHHHHhcCCCEE
Confidence 4799999 79999999999998875 677777654221110 000 0 00011 1234567778999999
Q ss_pred EEec
Q 019990 86 VMVG 89 (332)
Q Consensus 86 i~~a 89 (332)
|++.
T Consensus 65 ilav 68 (359)
T PRK06545 65 VLAV 68 (359)
T ss_pred EEeC
Confidence 9874
|
|
| >PRK08040 putative semialdehyde dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=95.22 E-value=0.067 Score=49.90 Aligned_cols=75 Identities=21% Similarity=0.243 Sum_probs=43.6
Q ss_pred CCCCcEEEEEcCCChhHHHHHHHHHhcccCCCCCCeEEEEEecccchhhhhhhHhhhhhhccCCccceEEeCCHHHHhCC
Q 019990 2 AKNPLRVLVTGAAGQIGYALVPMIARGIMLGPDQPVILHMLDIEPAAEALNGVKMELIDAAFPLLKGVVATTDVVEACKD 81 (332)
Q Consensus 2 ~~~~~kI~VtGaaG~IGs~l~~~L~~~~~~~~~~~~~i~l~D~~~~~~~~~~~~~dl~~~~~~~~~~v~~~~~~~~a~~~ 81 (332)
..+.+||+|+||+|++|..++..|.+..+ +..++.++.... ..|....+. ..++........++.+
T Consensus 1 ~~~~~~vaIvGATG~vG~ellrlL~~~~h----P~~~l~~laS~~----saG~~~~~~------~~~~~v~~~~~~~~~~ 66 (336)
T PRK08040 1 MSEGWNIALLGATGAVGEALLELLAERQF----PVGELYALASEE----SAGETLRFG------GKSVTVQDAAEFDWSQ 66 (336)
T ss_pred CCCCCEEEEEccCCHHHHHHHHHHhcCCC----CceEEEEEEccC----cCCceEEEC------CcceEEEeCchhhccC
Confidence 03567999999999999999998887432 113777775421 122222111 1133332111223478
Q ss_pred CcEEEEecC
Q 019990 82 VNIAVMVGG 90 (332)
Q Consensus 82 aDiVi~~ag 90 (332)
+|+||++++
T Consensus 67 ~Dvvf~a~p 75 (336)
T PRK08040 67 AQLAFFVAG 75 (336)
T ss_pred CCEEEECCC
Confidence 899988753
|
|
| >PRK06300 enoyl-(acyl carrier protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=95.21 E-value=0.31 Score=44.74 Aligned_cols=34 Identities=9% Similarity=0.131 Sum_probs=27.8
Q ss_pred CCcEEEEEcCC--ChhHHHHHHHHHhcccCCCCCCeEEEEEec
Q 019990 4 NPLRVLVTGAA--GQIGYALVPMIARGIMLGPDQPVILHMLDI 44 (332)
Q Consensus 4 ~~~kI~VtGaa--G~IGs~l~~~L~~~~~~~~~~~~~i~l~D~ 44 (332)
+.+.++||||+ ..||.+++..|++.|. +|++.|.
T Consensus 7 ~gk~alITGa~~~~GIG~a~A~~la~~Ga-------~Vvv~~~ 42 (299)
T PRK06300 7 TGKIAFIAGIGDDQGYGWGIAKALAEAGA-------TILVGTW 42 (299)
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHCCC-------EEEEEec
Confidence 35678999974 6999999999999885 7777653
|
|
| >TIGR02356 adenyl_thiF thiazole biosynthesis adenylyltransferase ThiF, E | Back alignment and domain information |
|---|
Probab=95.19 E-value=0.068 Score=46.16 Aligned_cols=35 Identities=26% Similarity=0.380 Sum_probs=30.0
Q ss_pred CCcEEEEEcCCChhHHHHHHHHHhcccCCCCCCeEEEEEecc
Q 019990 4 NPLRVLVTGAAGQIGYALVPMIARGIMLGPDQPVILHMLDIE 45 (332)
Q Consensus 4 ~~~kI~VtGaaG~IGs~l~~~L~~~~~~~~~~~~~i~l~D~~ 45 (332)
...||+|+| +|.+|+.++..|...|. + ++.++|.+
T Consensus 20 ~~~~VlviG-~GglGs~ia~~La~~Gv-~-----~i~lvD~d 54 (202)
T TIGR02356 20 LNSHVLIIG-AGGLGSPAALYLAGAGV-G-----TIVIVDDD 54 (202)
T ss_pred cCCCEEEEC-CCHHHHHHHHHHHHcCC-C-----eEEEecCC
Confidence 357899999 79999999999999885 2 79999975
|
coli subfamily. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with the Escherichia. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the more widely distributed clade of ThiF proteins such found in E. coli. |
| >PRK14175 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=95.18 E-value=0.072 Score=48.37 Aligned_cols=56 Identities=18% Similarity=0.279 Sum_probs=43.8
Q ss_pred CCcEEEEEcCCChhHHHHHHHHHhcccCCCCCCeEEEEEecccchhhhhhhHhhhhhhccCCccceEEeCCHHHHhCCCc
Q 019990 4 NPLRVLVTGAAGQIGYALVPMIARGIMLGPDQPVILHMLDIEPAAEALNGVKMELIDAAFPLLKGVVATTDVVEACKDVN 83 (332)
Q Consensus 4 ~~~kI~VtGaaG~IGs~l~~~L~~~~~~~~~~~~~i~l~D~~~~~~~~~~~~~dl~~~~~~~~~~v~~~~~~~~a~~~aD 83 (332)
..++|+|+|+++.+|..++..|...+- ++..++.++ .++.+.+++||
T Consensus 157 ~Gk~vvVIGrs~~VG~pla~lL~~~ga-------tVtv~~s~t--------------------------~~l~~~~~~AD 203 (286)
T PRK14175 157 EGKNAVVIGRSHIVGQPVSKLLLQKNA-------SVTILHSRS--------------------------KDMASYLKDAD 203 (286)
T ss_pred CCCEEEEECCCchhHHHHHHHHHHCCC-------eEEEEeCCc--------------------------hhHHHHHhhCC
Confidence 468999999766799999999988764 777776521 24566789999
Q ss_pred EEEEecCCC
Q 019990 84 IAVMVGGFP 92 (332)
Q Consensus 84 iVi~~ag~~ 92 (332)
+||.+.|.+
T Consensus 204 IVIsAvg~p 212 (286)
T PRK14175 204 VIVSAVGKP 212 (286)
T ss_pred EEEECCCCC
Confidence 999988765
|
|
| >PLN02350 phosphogluconate dehydrogenase (decarboxylating) | Back alignment and domain information |
|---|
Probab=95.18 E-value=0.17 Score=49.69 Aligned_cols=72 Identities=13% Similarity=0.071 Sum_probs=47.0
Q ss_pred CCcEEEEEcCCChhHHHHHHHHHhcccCCCCCCeEEEEEecccchhhhhhhHhhhhhhccC-CccceEEeCCHHHHhC--
Q 019990 4 NPLRVLVTGAAGQIGYALVPMIARGIMLGPDQPVILHMLDIEPAAEALNGVKMELIDAAFP-LLKGVVATTDVVEACK-- 80 (332)
Q Consensus 4 ~~~kI~VtGaaG~IGs~l~~~L~~~~~~~~~~~~~i~l~D~~~~~~~~~~~~~dl~~~~~~-~~~~v~~~~~~~~a~~-- 80 (332)
++++|.++| .|.+|++++..|+..|+ +|.++|+.. ++.. ++.+.... ....+....++.++.+
T Consensus 5 ~~~~IG~IG-LG~MG~~mA~nL~~~G~-------~V~V~NRt~--~k~~----~l~~~~~~~Ga~~~~~a~s~~e~v~~l 70 (493)
T PLN02350 5 ALSRIGLAG-LAVMGQNLALNIAEKGF-------PISVYNRTT--SKVD----ETVERAKKEGNLPLYGFKDPEDFVLSI 70 (493)
T ss_pred CCCCEEEEe-eHHHHHHHHHHHHhCCC-------eEEEECCCH--HHHH----HHHHhhhhcCCcccccCCCHHHHHhcC
Confidence 567899999 89999999999999886 899999853 2222 22211000 0011223345555554
Q ss_pred -CCcEEEEec
Q 019990 81 -DVNIAVMVG 89 (332)
Q Consensus 81 -~aDiVi~~a 89 (332)
.+|+||.+-
T Consensus 71 ~~~dvIi~~v 80 (493)
T PLN02350 71 QKPRSVIILV 80 (493)
T ss_pred CCCCEEEEEC
Confidence 499999874
|
|
| >PRK12475 thiamine/molybdopterin biosynthesis MoeB-like protein; Provisional | Back alignment and domain information |
|---|
Probab=95.17 E-value=0.086 Score=49.29 Aligned_cols=35 Identities=31% Similarity=0.448 Sum_probs=30.0
Q ss_pred CcEEEEEcCCChhHHHHHHHHHhcccCCCCCCeEEEEEeccc
Q 019990 5 PLRVLVTGAAGQIGYALVPMIARGIMLGPDQPVILHMLDIEP 46 (332)
Q Consensus 5 ~~kI~VtGaaG~IGs~l~~~L~~~~~~~~~~~~~i~l~D~~~ 46 (332)
..||+|+| +|.+|++++..|...|+ + ++.++|.+.
T Consensus 24 ~~~VlIiG-~GglGs~va~~La~aGv-g-----~i~lvD~D~ 58 (338)
T PRK12475 24 EKHVLIVG-AGALGAANAEALVRAGI-G-----KLTIADRDY 58 (338)
T ss_pred CCcEEEEC-CCHHHHHHHHHHHHcCC-C-----EEEEEcCCc
Confidence 56899999 69999999999999885 2 799999753
|
|
| >COG0345 ProC Pyrroline-5-carboxylate reductase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=95.11 E-value=0.082 Score=47.50 Aligned_cols=70 Identities=20% Similarity=0.287 Sum_probs=47.0
Q ss_pred CcEEEEEcCCChhHHHHHHHHHhcccCCCCCCeEEEEEecccchhhhhhhHhhhhhhccCCccceEEeCCHHHHhCCCcE
Q 019990 5 PLRVLVTGAAGQIGYALVPMIARGIMLGPDQPVILHMLDIEPAAEALNGVKMELIDAAFPLLKGVVATTDVVEACKDVNI 84 (332)
Q Consensus 5 ~~kI~VtGaaG~IGs~l~~~L~~~~~~~~~~~~~i~l~D~~~~~~~~~~~~~dl~~~~~~~~~~v~~~~~~~~a~~~aDi 84 (332)
++||+++| +|.+|++++..|+..+... +.+|.+.+++. ++.. ++.+. +.. .. ..+..++..++|+
T Consensus 1 ~~~IgfIG-~G~Mg~Ai~~gl~~~g~~~---~~~I~v~~~~~--e~~~----~l~~~-~g~--~~--~~~~~~~~~~adv 65 (266)
T COG0345 1 MMKIGFIG-AGNMGEAILSGLLKSGALP---PEEIIVTNRSE--EKRA----ALAAE-YGV--VT--TTDNQEAVEEADV 65 (266)
T ss_pred CceEEEEc-cCHHHHHHHHHHHhcCCCC---cceEEEeCCCH--HHHH----HHHHH-cCC--cc--cCcHHHHHhhCCE
Confidence 47899999 7999999999999887322 23788888753 2222 12211 111 11 4566677889999
Q ss_pred EEEec
Q 019990 85 AVMVG 89 (332)
Q Consensus 85 Vi~~a 89 (332)
||.+.
T Consensus 66 v~Lav 70 (266)
T COG0345 66 VFLAV 70 (266)
T ss_pred EEEEe
Confidence 99874
|
|
| >PTZ00431 pyrroline carboxylate reductase; Provisional | Back alignment and domain information |
|---|
Probab=95.08 E-value=0.1 Score=46.82 Aligned_cols=63 Identities=22% Similarity=0.228 Sum_probs=43.0
Q ss_pred CCcEEEEEcCCChhHHHHHHHHHhcccCCCCCCeEEEEEecccchhhhhhhHhhhhhhccCCccceEEeCCHHHHhCCCc
Q 019990 4 NPLRVLVTGAAGQIGYALVPMIARGIMLGPDQPVILHMLDIEPAAEALNGVKMELIDAAFPLLKGVVATTDVVEACKDVN 83 (332)
Q Consensus 4 ~~~kI~VtGaaG~IGs~l~~~L~~~~~~~~~~~~~i~l~D~~~~~~~~~~~~~dl~~~~~~~~~~v~~~~~~~~a~~~aD 83 (332)
+.|||+|+| +|.+|++++..|.+.+... +.++..+|++. +.. .+....+..+.++++|
T Consensus 2 ~~mkI~iIG-~G~mG~ai~~~l~~~~~~~---~~~i~~~~~~~--~~~----------------~~~~~~~~~~~~~~~D 59 (260)
T PTZ00431 2 ENIRVGFIG-LGKMGSALAYGIENSNIIG---KENIYYHTPSK--KNT----------------PFVYLQSNEELAKTCD 59 (260)
T ss_pred CCCEEEEEC-ccHHHHHHHHHHHhCCCCC---cceEEEECCCh--hcC----------------CeEEeCChHHHHHhCC
Confidence 346899999 7999999999999876432 12588888642 111 0112345556678999
Q ss_pred EEEEe
Q 019990 84 IAVMV 88 (332)
Q Consensus 84 iVi~~ 88 (332)
+||++
T Consensus 60 ~Vila 64 (260)
T PTZ00431 60 IIVLA 64 (260)
T ss_pred EEEEE
Confidence 99887
|
|
| >PF02254 TrkA_N: TrkA-N domain; InterPro: IPR003148 The regulator of K+ conductance (RCK) domain is found in many ligand-gated K+ channels, most often attached to the intracellular carboxy terminus | Back alignment and domain information |
|---|
Probab=95.03 E-value=0.23 Score=38.35 Aligned_cols=95 Identities=19% Similarity=0.362 Sum_probs=53.8
Q ss_pred EEEEcCCChhHHHHHHHHHhcccCCCCCCeEEEEEecccchhhhhhhHhhhhhhccC-CccceEEeCCHHHH-hCCCcEE
Q 019990 8 VLVTGAAGQIGYALVPMIARGIMLGPDQPVILHMLDIEPAAEALNGVKMELIDAAFP-LLKGVVATTDVVEA-CKDVNIA 85 (332)
Q Consensus 8 I~VtGaaG~IGs~l~~~L~~~~~~~~~~~~~i~l~D~~~~~~~~~~~~~dl~~~~~~-~~~~v~~~~~~~~a-~~~aDiV 85 (332)
|.|+| .|.+|..++..|.+.+. +++++|.++ +... .+...... ..++......+.++ +.++|.|
T Consensus 1 vvI~G-~g~~~~~i~~~L~~~~~-------~vvvid~d~--~~~~----~~~~~~~~~i~gd~~~~~~l~~a~i~~a~~v 66 (116)
T PF02254_consen 1 VVIIG-YGRIGREIAEQLKEGGI-------DVVVIDRDP--ERVE----ELREEGVEVIYGDATDPEVLERAGIEKADAV 66 (116)
T ss_dssp EEEES--SHHHHHHHHHHHHTTS-------EEEEEESSH--HHHH----HHHHTTSEEEES-TTSHHHHHHTTGGCESEE
T ss_pred eEEEc-CCHHHHHHHHHHHhCCC-------EEEEEECCc--HHHH----HHHhcccccccccchhhhHHhhcCccccCEE
Confidence 67899 69999999999998653 799999864 2222 22211111 11233222233332 5788988
Q ss_pred EEecCCCCCCCCChhHHHhhhHHHHHHHHHHHHhhcCCCcEEEEEeC
Q 019990 86 VMVGGFPRKEGMERKDVMSKNVSIYKAQASALEKHAAPNCKVLVVAN 132 (332)
Q Consensus 86 i~~ag~~~~~~~~~~~~~~~N~~~~~~i~~~i~~~~~~~~~viv~sn 132 (332)
+.+.+ + + ..|. .++..+++.. |+.+++...+
T Consensus 67 v~~~~-------~--d--~~n~----~~~~~~r~~~-~~~~ii~~~~ 97 (116)
T PF02254_consen 67 VILTD-------D--D--EENL----LIALLARELN-PDIRIIARVN 97 (116)
T ss_dssp EEESS-------S--H--HHHH----HHHHHHHHHT-TTSEEEEEES
T ss_pred EEccC-------C--H--HHHH----HHHHHHHHHC-CCCeEEEEEC
Confidence 88742 1 1 2233 3455566654 6666666554
|
The domain is prevalent among prokaryotic K+ channels, and also found in eukaryotic, high-conductance Ca2+-activated K+ channels (BK channels) [, , ]. Largely involved in redox-linked regulation of potassium channels, the N-terminal part of the RCK domain is predicted to be an active dehydrogenase at least in some cases []. Some have a conserved sequence motif (G-x-G-x-x-G-x(n)-[DE]) for NAD+ binding [], but others do not, reflecting the diversity of ligands for RCK domains. The C-terminal part is less conserved, being absent in some channels, such as the kefC antiporter from Escherichia coli. It is predicted to bind unidentified ligands and to regulate sulphate, sodium and other transporters. The X-ray structure of several RCK domains has been solved [, , ]. It reveals an alpha-beta fold similar to dehydrogenase enzymes. The domain forms a homodimer, producing a cleft between two lobes. It has a composite structure, with an N-terminal (RCK-N), and a C-terminal (RCK-C) subdomain. The RCK-N subdomain forms a Rossmann fold with two alpha helices on one side of a six stranded parallel beta sheet and three alpha helices on the other side. The RCK-C subdomain is an all-beta-strand fold. It forms an extention of the dimer interface and further stabilises the RCK homodimer [, , ]. Ca2+ is a ligand that opens the channel in a concentration-dependent manner. Two Ca2+ ions are located at the base of a cleft between two RCK domains, coordinated by the carboxylate groups of two glutamate residues, and by an aspartate residue [, , ]. RCK domains occur in at least five different contexts: As a single domain on the C terminus of some K+ channels (for example, many prokaryotic K+ channels). As two tandem RCK domains on the C terminus of some transporters that form gating rings (for example, eukaryotic BK channels). The gating ring has an arrangement of eight identical RCK domains, one from each of the four pore-forming subunits and four from the intracellular solution. As two domains, one at the N terminus and another at the C terminus of transporter (for example, the prokaryotic trk system potassium uptake protein A). As a soluble protein (not part of a K+ channel) consisting of two tandem RCK domains. As a soluble protein consisting of a single RCK domain. This entry represents the N-terminal subdomain of RCK.; GO: 0006813 potassium ion transport; PDB: 3L4B_E 1LSS_C 3LLV_A 2FY8_D 2AEF_A 1LNQ_E 3RBX_C 3KXD_A 2AEJ_A 3RBZ_A .... |
| >PRK13304 L-aspartate dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=95.02 E-value=0.097 Score=47.21 Aligned_cols=68 Identities=22% Similarity=0.306 Sum_probs=43.5
Q ss_pred CcEEEEEcCCChhHHHHHHHHHhcccCCCCCCeE-EEEEecccchhhhhhhHhhhhhhccCCccceEEeCCHHHHhCCCc
Q 019990 5 PLRVLVTGAAGQIGYALVPMIARGIMLGPDQPVI-LHMLDIEPAAEALNGVKMELIDAAFPLLKGVVATTDVVEACKDVN 83 (332)
Q Consensus 5 ~~kI~VtGaaG~IGs~l~~~L~~~~~~~~~~~~~-i~l~D~~~~~~~~~~~~~dl~~~~~~~~~~v~~~~~~~~a~~~aD 83 (332)
|+||+|+| +|.+|..++..|.+.+. + .+ +.++|.+. ++.. ++.+. . +.....++.+.+.++|
T Consensus 1 mmrIgIIG-~G~iG~~ia~~l~~~~~-~----~elv~v~d~~~--~~a~----~~a~~---~--~~~~~~~~~ell~~~D 63 (265)
T PRK13304 1 MLKIGIVG-CGAIASLITKAILSGRI-N----AELYAFYDRNL--EKAE----NLASK---T--GAKACLSIDELVEDVD 63 (265)
T ss_pred CCEEEEEC-ccHHHHHHHHHHHcCCC-C----eEEEEEECCCH--HHHH----HHHHh---c--CCeeECCHHHHhcCCC
Confidence 46999999 79999999998876531 1 14 56788753 2222 12110 0 1223456666668999
Q ss_pred EEEEec
Q 019990 84 IAVMVG 89 (332)
Q Consensus 84 iVi~~a 89 (332)
+|++++
T Consensus 64 vVvi~a 69 (265)
T PRK13304 64 LVVECA 69 (265)
T ss_pred EEEEcC
Confidence 999986
|
|
| >PRK15438 erythronate-4-phosphate dehydrogenase PdxB; Provisional | Back alignment and domain information |
|---|
Probab=95.01 E-value=0.15 Score=48.28 Aligned_cols=61 Identities=18% Similarity=0.195 Sum_probs=43.9
Q ss_pred CCcEEEEEcCCChhHHHHHHHHHhcccCCCCCCeEEEEEecccchhhhhhhHhhhhhhccCCccceEEeCCHHHHhCCCc
Q 019990 4 NPLRVLVTGAAGQIGYALVPMIARGIMLGPDQPVILHMLDIEPAAEALNGVKMELIDAAFPLLKGVVATTDVVEACKDVN 83 (332)
Q Consensus 4 ~~~kI~VtGaaG~IGs~l~~~L~~~~~~~~~~~~~i~l~D~~~~~~~~~~~~~dl~~~~~~~~~~v~~~~~~~~a~~~aD 83 (332)
..++|+|+| .|.||+.++..|..-|. ++..+|.... + .+ .. . ...++.+.++.||
T Consensus 115 ~gktvGIIG-~G~IG~~vA~~l~a~G~-------~V~~~dp~~~-~--~~------~~-------~-~~~~L~ell~~sD 169 (378)
T PRK15438 115 HDRTVGIVG-VGNVGRRLQARLEALGI-------KTLLCDPPRA-D--RG------DE-------G-DFRSLDELVQEAD 169 (378)
T ss_pred CCCEEEEEC-cCHHHHHHHHHHHHCCC-------EEEEECCccc-c--cc------cc-------c-ccCCHHHHHhhCC
Confidence 457999999 79999999999988775 8999985311 0 00 00 0 1246778889999
Q ss_pred EEEEec
Q 019990 84 IAVMVG 89 (332)
Q Consensus 84 iVi~~a 89 (332)
+|++..
T Consensus 170 iI~lh~ 175 (378)
T PRK15438 170 ILTFHT 175 (378)
T ss_pred EEEEeC
Confidence 998764
|
|
| >COG1712 Predicted dinucleotide-utilizing enzyme [General function prediction only] | Back alignment and domain information |
|---|
Probab=94.96 E-value=0.4 Score=41.67 Aligned_cols=87 Identities=20% Similarity=0.289 Sum_probs=53.8
Q ss_pred cEEEEEcCCChhHHHHHHHHHhcccCCCCCCeEEEEEecccchhhhhhhHhhhhhhccCCccceEEeCCHHHHhCCCcEE
Q 019990 6 LRVLVTGAAGQIGYALVPMIARGIMLGPDQPVILHMLDIEPAAEALNGVKMELIDAAFPLLKGVVATTDVVEACKDVNIA 85 (332)
Q Consensus 6 ~kI~VtGaaG~IGs~l~~~L~~~~~~~~~~~~~i~l~D~~~~~~~~~~~~~dl~~~~~~~~~~v~~~~~~~~a~~~aDiV 85 (332)
++|.++| +|+||..++..+..+.. + ..-+.++|.+. ++.. .+... ... ....++.+.+.+.|++
T Consensus 1 l~vgiVG-cGaIG~~l~e~v~~~~~-~---~e~v~v~D~~~--ek~~----~~~~~---~~~--~~~s~ide~~~~~Dlv 64 (255)
T COG1712 1 LKVGIVG-CGAIGKFLLELVRDGRV-D---FELVAVYDRDE--EKAK----ELEAS---VGR--RCVSDIDELIAEVDLV 64 (255)
T ss_pred CeEEEEe-ccHHHHHHHHHHhcCCc-c---eeEEEEecCCH--HHHH----HHHhh---cCC--CccccHHHHhhcccee
Confidence 4799999 89999999988775532 1 12577888753 2222 22211 111 1125666667899999
Q ss_pred EEecCCCCCCCCChhHHHhhhHHHHHHHHHHHHhhcCCCc
Q 019990 86 VMVGGFPRKEGMERKDVMSKNVSIYKAQASALEKHAAPNC 125 (332)
Q Consensus 86 i~~ag~~~~~~~~~~~~~~~N~~~~~~i~~~i~~~~~~~~ 125 (332)
|-+|+. +.+++++..+-+.+ .++
T Consensus 65 VEaAS~----------------~Av~e~~~~~L~~g-~d~ 87 (255)
T COG1712 65 VEAASP----------------EAVREYVPKILKAG-IDV 87 (255)
T ss_pred eeeCCH----------------HHHHHHhHHHHhcC-CCE
Confidence 988752 33566677676665 454
|
|
| >PRK06141 ornithine cyclodeaminase; Validated | Back alignment and domain information |
|---|
Probab=94.95 E-value=0.19 Score=46.53 Aligned_cols=73 Identities=19% Similarity=0.226 Sum_probs=49.0
Q ss_pred CCcEEEEEcCCChhHHHHHHHHHh-cccCCCCCCeEEEEEecccchhhhhhhHhhhhhhccCCccceEEeCCHHHHhCCC
Q 019990 4 NPLRVLVTGAAGQIGYALVPMIAR-GIMLGPDQPVILHMLDIEPAAEALNGVKMELIDAAFPLLKGVVATTDVVEACKDV 82 (332)
Q Consensus 4 ~~~kI~VtGaaG~IGs~l~~~L~~-~~~~~~~~~~~i~l~D~~~~~~~~~~~~~dl~~~~~~~~~~v~~~~~~~~a~~~a 82 (332)
+.++|+|+| +|..|...+..++. .+. .+|+++++.. ++......++.+. ...+....+..++++++
T Consensus 124 ~~~~v~iiG-~G~~a~~~~~al~~~~~~------~~V~V~~Rs~--~~a~~~a~~~~~~----g~~~~~~~~~~~av~~a 190 (314)
T PRK06141 124 DASRLLVVG-TGRLASLLALAHASVRPI------KQVRVWGRDP--AKAEALAAELRAQ----GFDAEVVTDLEAAVRQA 190 (314)
T ss_pred CCceEEEEC-CcHHHHHHHHHHHhcCCC------CEEEEEcCCH--HHHHHHHHHHHhc----CCceEEeCCHHHHHhcC
Confidence 467999999 79999999886654 332 2899999853 3444444443321 11244456778889999
Q ss_pred cEEEEec
Q 019990 83 NIAVMVG 89 (332)
Q Consensus 83 DiVi~~a 89 (332)
|+|+.+.
T Consensus 191 DIVi~aT 197 (314)
T PRK06141 191 DIISCAT 197 (314)
T ss_pred CEEEEee
Confidence 9996553
|
|
| >PRK07589 ornithine cyclodeaminase; Validated | Back alignment and domain information |
|---|
Probab=94.95 E-value=0.17 Score=47.39 Aligned_cols=74 Identities=19% Similarity=0.204 Sum_probs=51.4
Q ss_pred CCcEEEEEcCCChhHHHHHHHHHhcccCCCCCCeEEEEEecccchhhhhhhHhhhhhhccCCccceEEeCCHHHHhCCCc
Q 019990 4 NPLRVLVTGAAGQIGYALVPMIARGIMLGPDQPVILHMLDIEPAAEALNGVKMELIDAAFPLLKGVVATTDVVEACKDVN 83 (332)
Q Consensus 4 ~~~kI~VtGaaG~IGs~l~~~L~~~~~~~~~~~~~i~l~D~~~~~~~~~~~~~dl~~~~~~~~~~v~~~~~~~~a~~~aD 83 (332)
+..+++|+| +|..+.+.+..++.-.-+ .+|+++++.. ++......++.+. ..++....+.++++++||
T Consensus 128 da~~l~iiG-aG~QA~~~l~a~~~vr~i-----~~V~v~~r~~--~~a~~~~~~~~~~----~~~v~~~~~~~~av~~AD 195 (346)
T PRK07589 128 DSRTMALIG-NGAQSEFQALAFKALLGI-----EEIRLYDIDP--AATAKLARNLAGP----GLRIVACRSVAEAVEGAD 195 (346)
T ss_pred CCcEEEEEC-CcHHHHHHHHHHHHhCCc-----eEEEEEeCCH--HHHHHHHHHHHhc----CCcEEEeCCHHHHHhcCC
Confidence 457899999 799998888777653222 3899999864 3444444444431 124555678899999999
Q ss_pred EEEEec
Q 019990 84 IAVMVG 89 (332)
Q Consensus 84 iVi~~a 89 (332)
+|+.+-
T Consensus 196 IIvtaT 201 (346)
T PRK07589 196 IITTVT 201 (346)
T ss_pred EEEEec
Confidence 999754
|
|
| >KOG1207 consensus Diacetyl reductase/L-xylulose reductase [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=94.86 E-value=0.066 Score=44.62 Aligned_cols=155 Identities=16% Similarity=0.182 Sum_probs=85.2
Q ss_pred CcEEEEEcCCChhHHHHHHHHHhcccCCCCCCeEEEEEecccchhhhhhhHhhhhhhccCCccceEEeCCHHHHhC---C
Q 019990 5 PLRVLVTGAAGQIGYALVPMIARGIMLGPDQPVILHMLDIEPAAEALNGVKMELIDAAFPLLKGVVATTDVVEACK---D 81 (332)
Q Consensus 5 ~~kI~VtGaaG~IGs~l~~~L~~~~~~~~~~~~~i~l~D~~~~~~~~~~~~~dl~~~~~~~~~~v~~~~~~~~a~~---~ 81 (332)
.+.|++|||.-.||..++..|...|- .+..+-+++ +.+...+.+-.-...|...++.....+.+.+. -
T Consensus 7 G~~vlvTgagaGIG~~~v~~La~aGA-------~ViAvaR~~--a~L~sLV~e~p~~I~Pi~~Dls~wea~~~~l~~v~p 77 (245)
T KOG1207|consen 7 GVIVLVTGAGAGIGKEIVLSLAKAGA-------QVIAVARNE--ANLLSLVKETPSLIIPIVGDLSAWEALFKLLVPVFP 77 (245)
T ss_pred ceEEEeecccccccHHHHHHHHhcCC-------EEEEEecCH--HHHHHHHhhCCcceeeeEecccHHHHHHHhhcccCc
Confidence 46799999766899999999998774 777777653 22332222111111233334433222333332 2
Q ss_pred CcEEEEecCCCCC-C-C----CChhHHHhhhHHHHHHHHHHHHh----hcCCCcEEEEEeCChhhHHHHHHHHCCCCCCC
Q 019990 82 VNIAVMVGGFPRK-E-G----MERKDVMSKNVSIYKAQASALEK----HAAPNCKVLVVANPANTNALILKEFAPSIPAK 151 (332)
Q Consensus 82 aDiVi~~ag~~~~-~-~----~~~~~~~~~N~~~~~~i~~~i~~----~~~~~~~viv~snp~~~~~~~~~~~~~~~~~~ 151 (332)
.|..+.-||+... + + ++-+.-+..|+.....+.+..++ ...+.+ ++.+|+-+. + ..+..+
T Consensus 78 idgLVNNAgvA~~~pf~eiT~q~fDr~F~VNvravi~v~Q~var~lv~R~~~Ga-IVNvSSqas------~---R~~~nH 147 (245)
T KOG1207|consen 78 IDGLVNNAGVATNHPFGEITQQSFDRTFAVNVRAVILVAQLVARNLVDRQIKGA-IVNVSSQAS------I---RPLDNH 147 (245)
T ss_pred hhhhhccchhhhcchHHHHhHHhhcceeeeeeeeeeeHHHHHHHhhhhccCCce-EEEecchhc------c---cccCCc
Confidence 4666666765321 1 1 11112356677666555554332 232444 566665321 1 235667
Q ss_pred cEEEeecccHHHHHHHHHHHcCCCCCCee
Q 019990 152 NITCLTRLDHNRAMGQISERLKVHVSDVK 180 (332)
Q Consensus 152 ~i~~~t~l~~~r~~~~~a~~~~v~~~~v~ 180 (332)
..|..|+-.-..+.+.+|-.+| |..+|
T Consensus 148 tvYcatKaALDmlTk~lAlELG--p~kIR 174 (245)
T KOG1207|consen 148 TVYCATKAALDMLTKCLALELG--PQKIR 174 (245)
T ss_pred eEEeecHHHHHHHHHHHHHhhC--cceeE
Confidence 7888888777777777777766 45554
|
|
| >PRK06823 ornithine cyclodeaminase; Validated | Back alignment and domain information |
|---|
Probab=94.82 E-value=0.23 Score=46.02 Aligned_cols=74 Identities=15% Similarity=0.041 Sum_probs=51.1
Q ss_pred CCcEEEEEcCCChhHHHHHHHHHhcccCCCCCCeEEEEEecccchhhhhhhHhhhhhhccCCccceEEeCCHHHHhCCCc
Q 019990 4 NPLRVLVTGAAGQIGYALVPMIARGIMLGPDQPVILHMLDIEPAAEALNGVKMELIDAAFPLLKGVVATTDVVEACKDVN 83 (332)
Q Consensus 4 ~~~kI~VtGaaG~IGs~l~~~L~~~~~~~~~~~~~i~l~D~~~~~~~~~~~~~dl~~~~~~~~~~v~~~~~~~~a~~~aD 83 (332)
+..+++|+| +|..+.+.+..+..-.-+ .+|+++|++. ++.......+.+. ..++....+..+++++||
T Consensus 127 d~~~l~iiG-~G~qA~~~~~a~~~v~~i-----~~v~v~~r~~--~~a~~~~~~~~~~----~~~v~~~~~~~~av~~AD 194 (315)
T PRK06823 127 HVSAIGIVG-TGIQARMQLMYLKNVTDC-----RQLWVWGRSE--TALEEYRQYAQAL----GFAVNTTLDAAEVAHAAN 194 (315)
T ss_pred CCCEEEEEC-CcHHHHHHHHHHHhcCCC-----CEEEEECCCH--HHHHHHHHHHHhc----CCcEEEECCHHHHhcCCC
Confidence 467899999 799999988887763322 3899999864 3444333333321 124555677889999999
Q ss_pred EEEEec
Q 019990 84 IAVMVG 89 (332)
Q Consensus 84 iVi~~a 89 (332)
+|+.+-
T Consensus 195 IV~taT 200 (315)
T PRK06823 195 LIVTTT 200 (315)
T ss_pred EEEEec
Confidence 999764
|
|
| >TIGR01035 hemA glutamyl-tRNA reductase | Back alignment and domain information |
|---|
Probab=94.80 E-value=0.09 Score=50.68 Aligned_cols=73 Identities=21% Similarity=0.243 Sum_probs=48.1
Q ss_pred CCcEEEEEcCCChhHHHHHHHHHhcccCCCCCCeEEEEEecccchhhhhhhHhhhhhhccCCccceEEeCCHHHHhCCCc
Q 019990 4 NPLRVLVTGAAGQIGYALVPMIARGIMLGPDQPVILHMLDIEPAAEALNGVKMELIDAAFPLLKGVVATTDVVEACKDVN 83 (332)
Q Consensus 4 ~~~kI~VtGaaG~IGs~l~~~L~~~~~~~~~~~~~i~l~D~~~~~~~~~~~~~dl~~~~~~~~~~v~~~~~~~~a~~~aD 83 (332)
...+|+|+| +|.+|..++..|...|. .+|.+++++. ++.......+. .......++.+++.++|
T Consensus 179 ~~~~VlViG-aG~iG~~~a~~L~~~G~------~~V~v~~rs~--~ra~~la~~~g-------~~~i~~~~l~~~l~~aD 242 (417)
T TIGR01035 179 KGKKALLIG-AGEMGELVAKHLLRKGV------GKILIANRTY--ERAEDLAKELG-------GEAVKFEDLEEYLAEAD 242 (417)
T ss_pred cCCEEEEEC-ChHHHHHHHHHHHHCCC------CEEEEEeCCH--HHHHHHHHHcC-------CeEeeHHHHHHHHhhCC
Confidence 357899999 69999999999988764 2789998853 22222221111 11112235667788999
Q ss_pred EEEEecCCC
Q 019990 84 IAVMVGGFP 92 (332)
Q Consensus 84 iVi~~ag~~ 92 (332)
+||.+.+.+
T Consensus 243 vVi~aT~s~ 251 (417)
T TIGR01035 243 IVISSTGAP 251 (417)
T ss_pred EEEECCCCC
Confidence 999886544
|
This enzyme, together with glutamate-1-semialdehyde-2,1-aminomutase (TIGR00713), leads to the production of delta-amino-levulinic acid from Glu-tRNA. |
| >PRK00257 erythronate-4-phosphate dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=94.77 E-value=0.21 Score=47.42 Aligned_cols=62 Identities=13% Similarity=0.070 Sum_probs=44.3
Q ss_pred CCcEEEEEcCCChhHHHHHHHHHhcccCCCCCCeEEEEEecccchhhhhhhHhhhhhhccCCccceEEeCCHHHHhCCCc
Q 019990 4 NPLRVLVTGAAGQIGYALVPMIARGIMLGPDQPVILHMLDIEPAAEALNGVKMELIDAAFPLLKGVVATTDVVEACKDVN 83 (332)
Q Consensus 4 ~~~kI~VtGaaG~IGs~l~~~L~~~~~~~~~~~~~i~l~D~~~~~~~~~~~~~dl~~~~~~~~~~v~~~~~~~~a~~~aD 83 (332)
..++|+|+| .|.||+.++..|..-|. ++..+|.... ... . .. ...++.+.+++||
T Consensus 115 ~gktvGIIG-~G~IG~~va~~l~a~G~-------~V~~~Dp~~~--~~~-------~-------~~-~~~~l~ell~~aD 169 (381)
T PRK00257 115 AERTYGVVG-AGHVGGRLVRVLRGLGW-------KVLVCDPPRQ--EAE-------G-------DG-DFVSLERILEECD 169 (381)
T ss_pred CcCEEEEEC-CCHHHHHHHHHHHHCCC-------EEEEECCccc--ccc-------c-------Cc-cccCHHHHHhhCC
Confidence 357899999 79999999999988775 8999996321 000 0 00 1235778889999
Q ss_pred EEEEecC
Q 019990 84 IAVMVGG 90 (332)
Q Consensus 84 iVi~~ag 90 (332)
+|++..-
T Consensus 170 iV~lh~P 176 (381)
T PRK00257 170 VISLHTP 176 (381)
T ss_pred EEEEeCc
Confidence 9887653
|
|
| >cd01075 NAD_bind_Leu_Phe_Val_DH NAD(P) binding domain of leucine dehydrogenase, phenylalanine dehydrogenase, and valine dehydrogenase | Back alignment and domain information |
|---|
Probab=94.77 E-value=0.16 Score=43.78 Aligned_cols=35 Identities=29% Similarity=0.389 Sum_probs=30.1
Q ss_pred CCcEEEEEcCCChhHHHHHHHHHhcccCCCCCCeEEEEEeccc
Q 019990 4 NPLRVLVTGAAGQIGYALVPMIARGIMLGPDQPVILHMLDIEP 46 (332)
Q Consensus 4 ~~~kI~VtGaaG~IGs~l~~~L~~~~~~~~~~~~~i~l~D~~~ 46 (332)
..++|+|+| .|.+|++++..|.+.|. +|+.+|.+.
T Consensus 27 ~gk~v~I~G-~G~vG~~~A~~L~~~G~-------~Vvv~D~~~ 61 (200)
T cd01075 27 EGKTVAVQG-LGKVGYKLAEHLLEEGA-------KLIVADINE 61 (200)
T ss_pred CCCEEEEEC-CCHHHHHHHHHHHHCCC-------EEEEEcCCH
Confidence 357899999 69999999999998885 888999853
|
Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. For example, leucine DH catalyzes the reversible oxidative deamination of L-leucine and several other straight or branched chain amino acids to the corresponding 2-oxoacid derivative. Amino acid DH -like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily inc |
| >PF00670 AdoHcyase_NAD: S-adenosyl-L-homocysteine hydrolase, NAD binding domain; InterPro: IPR015878 S-adenosyl-L-homocysteine hydrolase (3 | Back alignment and domain information |
|---|
Probab=94.74 E-value=0.15 Score=42.15 Aligned_cols=67 Identities=28% Similarity=0.401 Sum_probs=42.2
Q ss_pred CCcEEEEEcCCChhHHHHHHHHHhcccCCCCCCeEEEEEecccchhhhhhhHhhhhhhccCCccceEEeCCHHHHhCCCc
Q 019990 4 NPLRVLVTGAAGQIGYALVPMIARGIMLGPDQPVILHMLDIEPAAEALNGVKMELIDAAFPLLKGVVATTDVVEACKDVN 83 (332)
Q Consensus 4 ~~~kI~VtGaaG~IGs~l~~~L~~~~~~~~~~~~~i~l~D~~~~~~~~~~~~~dl~~~~~~~~~~v~~~~~~~~a~~~aD 83 (332)
..++++|+| -|.+|+.+|..|...|. +|.++|.++- ..+++. + + .+.. ..+.++++.+|
T Consensus 22 ~Gk~vvV~G-YG~vG~g~A~~lr~~Ga-------~V~V~e~DPi-~alqA~-~---d-------Gf~v-~~~~~a~~~ad 80 (162)
T PF00670_consen 22 AGKRVVVIG-YGKVGKGIARALRGLGA-------RVTVTEIDPI-RALQAA-M---D-------GFEV-MTLEEALRDAD 80 (162)
T ss_dssp TTSEEEEE---SHHHHHHHHHHHHTT--------EEEEE-SSHH-HHHHHH-H---T-------T-EE-E-HHHHTTT-S
T ss_pred CCCEEEEeC-CCcccHHHHHHHhhCCC-------EEEEEECChH-HHHHhh-h---c-------CcEe-cCHHHHHhhCC
Confidence 457899999 79999999999998875 8899998642 122221 1 1 1222 24788999999
Q ss_pred EEEEecCC
Q 019990 84 IAVMVGGF 91 (332)
Q Consensus 84 iVi~~ag~ 91 (332)
++|.+-|.
T Consensus 81 i~vtaTG~ 88 (162)
T PF00670_consen 81 IFVTATGN 88 (162)
T ss_dssp EEEE-SSS
T ss_pred EEEECCCC
Confidence 98876554
|
3.1.1 from EC) (AdoHcyase) is an enzyme of the activated methyl cycle, responsible for the reversible hydration of S-adenosyl-L-homocysteine into adenosine and homocysteine. AdoHcyase is an ubiquitous enzyme which binds and requires NAD+ as a cofactor. AdoHcyase is a highly conserved protein [] of about 430 to 470 amino acids. This entry represents the glycine-rich region in the central part of AdoHcyase, which is thought to be involved in NAD-binding.; GO: 0004013 adenosylhomocysteinase activity; PDB: 2ZJ1_C 3DHY_B 2ZIZ_C 2ZJ0_D 3CE6_B 3GLQ_B 3D64_A 3G1U_C 1A7A_A 3NJ4_C .... |
| >TIGR00465 ilvC ketol-acid reductoisomerase | Back alignment and domain information |
|---|
Probab=94.73 E-value=0.11 Score=48.15 Aligned_cols=66 Identities=14% Similarity=0.077 Sum_probs=42.9
Q ss_pred CCcEEEEEcCCChhHHHHHHHHHhcccCCCCCCeEEEEEecccchhhhhhhHhhhhhhccCCccceEEeCCHHHHhCCCc
Q 019990 4 NPLRVLVTGAAGQIGYALVPMIARGIMLGPDQPVILHMLDIEPAAEALNGVKMELIDAAFPLLKGVVATTDVVEACKDVN 83 (332)
Q Consensus 4 ~~~kI~VtGaaG~IGs~l~~~L~~~~~~~~~~~~~i~l~D~~~~~~~~~~~~~dl~~~~~~~~~~v~~~~~~~~a~~~aD 83 (332)
+.+||+|+| .|.+|++++..|...++ ++++.+.... +... .+... .+.. .+..++++++|
T Consensus 2 ~~kkIgiIG-~G~mG~AiA~~L~~sG~-------~Viv~~~~~~-~~~~----~a~~~------Gv~~-~s~~ea~~~AD 61 (314)
T TIGR00465 2 KGKTVAIIG-YGSQGHAQALNLRDSGL-------NVIVGLRKGG-ASWK----KATED------GFKV-GTVEEAIPQAD 61 (314)
T ss_pred CcCEEEEEe-EcHHHHHHHHHHHHCCC-------eEEEEECcCh-hhHH----HHHHC------CCEE-CCHHHHHhcCC
Confidence 357899999 79999999999998775 5655554321 1111 11111 1222 24667789999
Q ss_pred EEEEec
Q 019990 84 IAVMVG 89 (332)
Q Consensus 84 iVi~~a 89 (332)
+|+++.
T Consensus 62 iVvLaV 67 (314)
T TIGR00465 62 LIMNLL 67 (314)
T ss_pred EEEEeC
Confidence 999874
|
This is the second enzyme in the parallel isoleucine-valine biosynthetic pathway |
| >PLN02819 lysine-ketoglutarate reductase/saccharopine dehydrogenase | Back alignment and domain information |
|---|
Probab=94.73 E-value=0.049 Score=57.83 Aligned_cols=83 Identities=12% Similarity=0.161 Sum_probs=46.6
Q ss_pred CCcEEEEEcCCChhHHHHHHHHHhcccCC------CC-CCeEEEEEecccchhhhhhhHhhhhhhccCCccceEEeCCHH
Q 019990 4 NPLRVLVTGAAGQIGYALVPMIARGIMLG------PD-QPVILHMLDIEPAAEALNGVKMELIDAAFPLLKGVVATTDVV 76 (332)
Q Consensus 4 ~~~kI~VtGaaG~IGs~l~~~L~~~~~~~------~~-~~~~i~l~D~~~~~~~~~~~~~dl~~~~~~~~~~v~~~~~~~ 76 (332)
.++||+|+| +|+||+..+..|.+..-.. .+ +...+.+.|.+. +.++.....+.... ....|+....++.
T Consensus 568 ~~~rIlVLG-AG~VG~~~a~~La~~~~~~~~~~~~~~~~~~lV~VaD~~~--~~a~~la~~~~~~~-~v~lDv~D~e~L~ 643 (1042)
T PLN02819 568 KSQNVLILG-AGRVCRPAAEYLASVKTISYYGDDSEEPTDVHVIVASLYL--KDAKETVEGIENAE-AVQLDVSDSESLL 643 (1042)
T ss_pred cCCcEEEEC-CCHHHHHHHHHHHhCcCccccccccccccccEEEEECCCH--HHHHHHHHhcCCCc-eEEeecCCHHHHH
Confidence 478999999 6999999999997643210 00 012477788753 22222221111100 0112233334455
Q ss_pred HHhCCCcEEEEecC
Q 019990 77 EACKDVNIAVMVGG 90 (332)
Q Consensus 77 ~a~~~aDiVi~~ag 90 (332)
++++++|+||.+..
T Consensus 644 ~~v~~~DaVIsalP 657 (1042)
T PLN02819 644 KYVSQVDVVISLLP 657 (1042)
T ss_pred HhhcCCCEEEECCC
Confidence 55688999999864
|
|
| >PRK00258 aroE shikimate 5-dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=94.73 E-value=0.19 Score=45.57 Aligned_cols=75 Identities=12% Similarity=0.094 Sum_probs=48.1
Q ss_pred CCcEEEEEcCCChhHHHHHHHHHhcccCCCCCCeEEEEEecccchhhhhhhHhhhhhhccCCccceEEeCCHHHHhCCCc
Q 019990 4 NPLRVLVTGAAGQIGYALVPMIARGIMLGPDQPVILHMLDIEPAAEALNGVKMELIDAAFPLLKGVVATTDVVEACKDVN 83 (332)
Q Consensus 4 ~~~kI~VtGaaG~IGs~l~~~L~~~~~~~~~~~~~i~l~D~~~~~~~~~~~~~dl~~~~~~~~~~v~~~~~~~~a~~~aD 83 (332)
..++++|+| +|.+|++++..|...+. .+|.+++++. ++++....++... ..+....+..+.+.++|
T Consensus 122 ~~k~vlVlG-aGg~a~ai~~aL~~~g~------~~V~v~~R~~--~~a~~l~~~~~~~-----~~~~~~~~~~~~~~~~D 187 (278)
T PRK00258 122 KGKRILILG-AGGAARAVILPLLDLGV------AEITIVNRTV--ERAEELAKLFGAL-----GKAELDLELQEELADFD 187 (278)
T ss_pred CCCEEEEEc-CcHHHHHHHHHHHHcCC------CEEEEEeCCH--HHHHHHHHHhhhc-----cceeecccchhccccCC
Confidence 356899999 59999999999998774 2899999863 3333332222211 01111113345678899
Q ss_pred EEEEecCCC
Q 019990 84 IAVMVGGFP 92 (332)
Q Consensus 84 iVi~~ag~~ 92 (332)
+||.+....
T Consensus 188 ivInaTp~g 196 (278)
T PRK00258 188 LIINATSAG 196 (278)
T ss_pred EEEECCcCC
Confidence 999986443
|
|
| >PRK13940 glutamyl-tRNA reductase; Provisional | Back alignment and domain information |
|---|
Probab=94.72 E-value=0.12 Score=49.73 Aligned_cols=75 Identities=15% Similarity=0.154 Sum_probs=50.4
Q ss_pred CCcEEEEEcCCChhHHHHHHHHHhcccCCCCCCeEEEEEecccchhhhhhhHhhhhhhccCCccceEEeCCHHHHhCCCc
Q 019990 4 NPLRVLVTGAAGQIGYALVPMIARGIMLGPDQPVILHMLDIEPAAEALNGVKMELIDAAFPLLKGVVATTDVVEACKDVN 83 (332)
Q Consensus 4 ~~~kI~VtGaaG~IGs~l~~~L~~~~~~~~~~~~~i~l~D~~~~~~~~~~~~~dl~~~~~~~~~~v~~~~~~~~a~~~aD 83 (332)
..+||+|+| +|.+|..++..|...|. .++.++.+.. ++.......+.. ..+....++.+.+.++|
T Consensus 180 ~~kkvlviG-aG~~a~~va~~L~~~g~------~~I~V~nRt~--~ra~~La~~~~~------~~~~~~~~l~~~l~~aD 244 (414)
T PRK13940 180 SSKNVLIIG-AGQTGELLFRHVTALAP------KQIMLANRTI--EKAQKITSAFRN------ASAHYLSELPQLIKKAD 244 (414)
T ss_pred cCCEEEEEc-CcHHHHHHHHHHHHcCC------CEEEEECCCH--HHHHHHHHHhcC------CeEecHHHHHHHhccCC
Confidence 357899999 69999999999988775 2789998753 233222222110 12222345677789999
Q ss_pred EEEEecCCCC
Q 019990 84 IAVMVGGFPR 93 (332)
Q Consensus 84 iVi~~ag~~~ 93 (332)
+||.+.+.|.
T Consensus 245 iVI~aT~a~~ 254 (414)
T PRK13940 245 IIIAAVNVLE 254 (414)
T ss_pred EEEECcCCCC
Confidence 9999876653
|
|
| >PRK07574 formate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=94.68 E-value=0.13 Score=48.96 Aligned_cols=66 Identities=18% Similarity=0.217 Sum_probs=46.3
Q ss_pred CCcEEEEEcCCChhHHHHHHHHHhcccCCCCCCeEEEEEecccchhhhhhhHhhhhhhccCCccceEEeCCHHHHhCCCc
Q 019990 4 NPLRVLVTGAAGQIGYALVPMIARGIMLGPDQPVILHMLDIEPAAEALNGVKMELIDAAFPLLKGVVATTDVVEACKDVN 83 (332)
Q Consensus 4 ~~~kI~VtGaaG~IGs~l~~~L~~~~~~~~~~~~~i~l~D~~~~~~~~~~~~~dl~~~~~~~~~~v~~~~~~~~a~~~aD 83 (332)
..++|+|+| .|.||+.++..|..-+. +|+.+|+.... . +.... .++....++.+.++.||
T Consensus 191 ~gktVGIvG-~G~IG~~vA~~l~~fG~-------~V~~~dr~~~~---~----~~~~~-----~g~~~~~~l~ell~~aD 250 (385)
T PRK07574 191 EGMTVGIVG-AGRIGLAVLRRLKPFDV-------KLHYTDRHRLP---E----EVEQE-----LGLTYHVSFDSLVSVCD 250 (385)
T ss_pred CCCEEEEEC-CCHHHHHHHHHHHhCCC-------EEEEECCCCCc---h----hhHhh-----cCceecCCHHHHhhcCC
Confidence 347899999 79999999999987665 89999975310 0 01000 01222356888899999
Q ss_pred EEEEec
Q 019990 84 IAVMVG 89 (332)
Q Consensus 84 iVi~~a 89 (332)
+|++..
T Consensus 251 vV~l~l 256 (385)
T PRK07574 251 VVTIHC 256 (385)
T ss_pred EEEEcC
Confidence 999874
|
|
| >TIGR01296 asd_B aspartate-semialdehyde dehydrogenase (peptidoglycan organisms) | Back alignment and domain information |
|---|
Probab=94.67 E-value=0.079 Score=49.59 Aligned_cols=70 Identities=20% Similarity=0.333 Sum_probs=40.9
Q ss_pred EEEEEcCCChhHHHHHHHHHhcccCCCCCCeEEEEEecccchhhhhhhHhhhhhhccCCccceEEe-CCHHHHhCCCcEE
Q 019990 7 RVLVTGAAGQIGYALVPMIARGIMLGPDQPVILHMLDIEPAAEALNGVKMELIDAAFPLLKGVVAT-TDVVEACKDVNIA 85 (332)
Q Consensus 7 kI~VtGaaG~IGs~l~~~L~~~~~~~~~~~~~i~l~D~~~~~~~~~~~~~dl~~~~~~~~~~v~~~-~~~~~a~~~aDiV 85 (332)
||+|+||+|.+|..|+..|.+.++- ..++.++..... .+....+. ..++... .+ .++++++|+|
T Consensus 1 ~VaIvGAtG~vG~eLi~lL~~~~hp----~~~l~~~as~~~----~g~~~~~~------~~~~~~~~~~-~~~~~~~D~v 65 (339)
T TIGR01296 1 NVAIVGATGAVGQEMLKILEERNFP----IDKLVLLASDRS----AGRKVTFK------GKELEVNEAK-IESFEGIDIA 65 (339)
T ss_pred CEEEEcCCCHHHHHHHHHHHhCCCC----hhhEEEEecccc----CCCeeeeC------CeeEEEEeCC-hHHhcCCCEE
Confidence 6899999999999999988775441 135665544221 12111111 0122221 12 2456889999
Q ss_pred EEecCC
Q 019990 86 VMVGGF 91 (332)
Q Consensus 86 i~~ag~ 91 (332)
|+++|.
T Consensus 66 ~~a~g~ 71 (339)
T TIGR01296 66 LFSAGG 71 (339)
T ss_pred EECCCH
Confidence 988653
|
Two closely related families of aspartate-semialdehyde dehydrogenase are found. They differ by a deep split in phylogenetic and percent identity trees and in gap patterns. This model represents a branch more closely related to the USG-1 protein than to the other aspartate-semialdehyde dehydrogenases represented in model TIGR00978. |
| >KOG1203 consensus Predicted dehydrogenase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=94.67 E-value=0.34 Score=46.13 Aligned_cols=28 Identities=36% Similarity=0.648 Sum_probs=25.4
Q ss_pred CCCcEEEEEcCCChhHHHHHHHHHhccc
Q 019990 3 KNPLRVLVTGAAGQIGYALVPMIARGIM 30 (332)
Q Consensus 3 ~~~~kI~VtGaaG~IGs~l~~~L~~~~~ 30 (332)
.++..|+|+||+|.+|+-++..|++.|+
T Consensus 77 ~~~~~VlVvGatG~vG~~iv~~llkrgf 104 (411)
T KOG1203|consen 77 KKPTTVLVVGATGKVGRRIVKILLKRGF 104 (411)
T ss_pred CCCCeEEEecCCCchhHHHHHHHHHCCC
Confidence 3578899999999999999999999886
|
|
| >PRK08605 D-lactate dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=94.62 E-value=0.11 Score=48.51 Aligned_cols=62 Identities=26% Similarity=0.253 Sum_probs=43.4
Q ss_pred CcEEEEEcCCChhHHHHHHHHHh-cccCCCCCCeEEEEEecccchhhhhhhHhhhhhhccCCccceEEeCCHHHHhCCCc
Q 019990 5 PLRVLVTGAAGQIGYALVPMIAR-GIMLGPDQPVILHMLDIEPAAEALNGVKMELIDAAFPLLKGVVATTDVVEACKDVN 83 (332)
Q Consensus 5 ~~kI~VtGaaG~IGs~l~~~L~~-~~~~~~~~~~~i~l~D~~~~~~~~~~~~~dl~~~~~~~~~~v~~~~~~~~a~~~aD 83 (332)
.++|+|+| .|.||+.++..|.. .+. +|..+|..... . ... .+....++.++++++|
T Consensus 146 g~~VgIIG-~G~IG~~vA~~L~~~~g~-------~V~~~d~~~~~-~-------~~~-------~~~~~~~l~ell~~aD 202 (332)
T PRK08605 146 DLKVAVIG-TGRIGLAVAKIFAKGYGS-------DVVAYDPFPNA-K-------AAT-------YVDYKDTIEEAVEGAD 202 (332)
T ss_pred CCEEEEEC-CCHHHHHHHHHHHhcCCC-------EEEEECCCccH-h-------HHh-------hccccCCHHHHHHhCC
Confidence 57899999 79999999999853 333 78889875321 0 111 0122346788899999
Q ss_pred EEEEec
Q 019990 84 IAVMVG 89 (332)
Q Consensus 84 iVi~~a 89 (332)
+|+++.
T Consensus 203 vIvl~l 208 (332)
T PRK08605 203 IVTLHM 208 (332)
T ss_pred EEEEeC
Confidence 999875
|
|
| >PRK14189 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=94.57 E-value=0.15 Score=46.34 Aligned_cols=56 Identities=14% Similarity=0.235 Sum_probs=43.1
Q ss_pred CCcEEEEEcCCChhHHHHHHHHHhcccCCCCCCeEEEEEecccchhhhhhhHhhhhhhccCCccceEEeCCHHHHhCCCc
Q 019990 4 NPLRVLVTGAAGQIGYALVPMIARGIMLGPDQPVILHMLDIEPAAEALNGVKMELIDAAFPLLKGVVATTDVVEACKDVN 83 (332)
Q Consensus 4 ~~~kI~VtGaaG~IGs~l~~~L~~~~~~~~~~~~~i~l~D~~~~~~~~~~~~~dl~~~~~~~~~~v~~~~~~~~a~~~aD 83 (332)
..++|+|+|.++.||..++..|...+. .|.+++.. +.++.+.++.||
T Consensus 157 ~Gk~vvViGrs~iVGkPla~lL~~~~a-------tVt~~hs~--------------------------t~~l~~~~~~AD 203 (285)
T PRK14189 157 RGAHAVVIGRSNIVGKPMAMLLLQAGA-------TVTICHSK--------------------------TRDLAAHTRQAD 203 (285)
T ss_pred CCCEEEEECCCCccHHHHHHHHHHCCC-------EEEEecCC--------------------------CCCHHHHhhhCC
Confidence 457999999888889999999987764 66665431 135667789999
Q ss_pred EEEEecCCC
Q 019990 84 IAVMVGGFP 92 (332)
Q Consensus 84 iVi~~ag~~ 92 (332)
+||...|.+
T Consensus 204 IVV~avG~~ 212 (285)
T PRK14189 204 IVVAAVGKR 212 (285)
T ss_pred EEEEcCCCc
Confidence 999988754
|
|
| >COG0289 DapB Dihydrodipicolinate reductase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=94.57 E-value=0.13 Score=45.76 Aligned_cols=75 Identities=23% Similarity=0.263 Sum_probs=42.8
Q ss_pred CcEEEEEcCCChhHHHHHHHHHhcccCCCCCCeEEEEEecccchhhhhhhHhhhhhhccCCccceEEeCCHHHHhCCCcE
Q 019990 5 PLRVLVTGAAGQIGYALVPMIARGIMLGPDQPVILHMLDIEPAAEALNGVKMELIDAAFPLLKGVVATTDVVEACKDVNI 84 (332)
Q Consensus 5 ~~kI~VtGaaG~IGs~l~~~L~~~~~~~~~~~~~i~l~D~~~~~~~~~~~~~dl~~~~~~~~~~v~~~~~~~~a~~~aDi 84 (332)
|+||+|.||+|.+|+.++..+.+..-+ .-+..+|.... ...+ .|..+........+....++.....++|+
T Consensus 2 ~iki~V~Ga~GRMG~~ii~~v~~~~~~-----~L~aa~~~~~~--~~~g--~d~ge~~g~~~~gv~v~~~~~~~~~~~DV 72 (266)
T COG0289 2 MIKVAVAGASGRMGRTLIRAVLEAPDL-----ELVAAFDRPGS--LSLG--SDAGELAGLGLLGVPVTDDLLLVKADADV 72 (266)
T ss_pred CceEEEEcCCChHHHHHHHHHhcCCCc-----eEEEEEecCCc--cccc--cchhhhccccccCceeecchhhcccCCCE
Confidence 689999999999999999998876522 12345665432 1111 12111111111233344455556678888
Q ss_pred EEEe
Q 019990 85 AVMV 88 (332)
Q Consensus 85 Vi~~ 88 (332)
+|=.
T Consensus 73 ~IDF 76 (266)
T COG0289 73 LIDF 76 (266)
T ss_pred EEEC
Confidence 8753
|
|
| >PRK13243 glyoxylate reductase; Reviewed | Back alignment and domain information |
|---|
Probab=94.55 E-value=0.12 Score=48.16 Aligned_cols=63 Identities=14% Similarity=0.040 Sum_probs=45.1
Q ss_pred CcEEEEEcCCChhHHHHHHHHHhcccCCCCCCeEEEEEecccchhhhhhhHhhhhhhccCCccceEEeCCHHHHhCCCcE
Q 019990 5 PLRVLVTGAAGQIGYALVPMIARGIMLGPDQPVILHMLDIEPAAEALNGVKMELIDAAFPLLKGVVATTDVVEACKDVNI 84 (332)
Q Consensus 5 ~~kI~VtGaaG~IGs~l~~~L~~~~~~~~~~~~~i~l~D~~~~~~~~~~~~~dl~~~~~~~~~~v~~~~~~~~a~~~aDi 84 (332)
.++|+|+| .|.||+.++..|...|. +|..+|+.... . . +... .+. ..++.+.+++||+
T Consensus 150 gktvgIiG-~G~IG~~vA~~l~~~G~-------~V~~~d~~~~~--~--~--~~~~-------~~~-~~~l~ell~~aDi 207 (333)
T PRK13243 150 GKTIGIIG-FGRIGQAVARRAKGFGM-------RILYYSRTRKP--E--A--EKEL-------GAE-YRPLEELLRESDF 207 (333)
T ss_pred CCEEEEEC-cCHHHHHHHHHHHHCCC-------EEEEECCCCCh--h--h--HHHc-------CCE-ecCHHHHHhhCCE
Confidence 57999999 79999999999987765 89999975311 0 0 0000 111 2467788999999
Q ss_pred EEEec
Q 019990 85 AVMVG 89 (332)
Q Consensus 85 Vi~~a 89 (332)
|+++.
T Consensus 208 V~l~l 212 (333)
T PRK13243 208 VSLHV 212 (333)
T ss_pred EEEeC
Confidence 99875
|
|
| >TIGR01724 hmd_rel H2-forming N(5),N(10)-methenyltetrahydromethanopterin dehydrogenase-related protein | Back alignment and domain information |
|---|
Probab=94.48 E-value=0.88 Score=41.93 Aligned_cols=58 Identities=22% Similarity=0.160 Sum_probs=38.0
Q ss_pred hHHHHHHHHHhcccCCCCCCeEEEEEecccchhhhh-hhHhhhhhhccCCccceEEeCCHHHHhCCCcEEEEec
Q 019990 17 IGYALVPMIARGIMLGPDQPVILHMLDIEPAAEALN-GVKMELIDAAFPLLKGVVATTDVVEACKDVNIAVMVG 89 (332)
Q Consensus 17 IGs~l~~~L~~~~~~~~~~~~~i~l~D~~~~~~~~~-~~~~dl~~~~~~~~~~v~~~~~~~~a~~~aDiVi~~a 89 (332)
-|+++|.+|++.|+ +|.++|++. +... .....+.+. ......+..++.+++|+||.+-
T Consensus 31 gGspMArnLlkAGh-------eV~V~Drnr--sa~e~e~~e~Laea------GA~~AaS~aEAAa~ADVVIL~L 89 (341)
T TIGR01724 31 GGSRMAIEFAMAGH-------DVVLAEPNR--EFMSDDLWKKVEDA------GVKVVSDDKEAAKHGEIHVLFT 89 (341)
T ss_pred CHHHHHHHHHHCCC-------EEEEEeCCh--hhhhhhhhHHHHHC------CCeecCCHHHHHhCCCEEEEec
Confidence 48899999998886 899999753 1221 111223221 2333456778899999999874
|
This model represents a sister clade to the authenticated coenzyme F420-dependent N(5),N(10)-methenyltetrahydromethanopterin reductase (HMD) of TIGR01723. Two members, designated HmdII and HmdIII, are found. Members are restricted to methanogens, but the function is unknown. |
| >PRK14179 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=94.47 E-value=0.14 Score=46.37 Aligned_cols=57 Identities=14% Similarity=0.244 Sum_probs=44.5
Q ss_pred CCcEEEEEcCCChhHHHHHHHHHhcccCCCCCCeEEEEEecccchhhhhhhHhhhhhhccCCccceEEeCCHHHHhCCCc
Q 019990 4 NPLRVLVTGAAGQIGYALVPMIARGIMLGPDQPVILHMLDIEPAAEALNGVKMELIDAAFPLLKGVVATTDVVEACKDVN 83 (332)
Q Consensus 4 ~~~kI~VtGaaG~IGs~l~~~L~~~~~~~~~~~~~i~l~D~~~~~~~~~~~~~dl~~~~~~~~~~v~~~~~~~~a~~~aD 83 (332)
..++|+|+|.+|.+|..++..|++.+. +|.++... +.++.+.+++||
T Consensus 157 ~Gk~v~vIG~S~ivG~Pla~lL~~~ga-------tVtv~~s~--------------------------t~~l~~~~~~AD 203 (284)
T PRK14179 157 EGKHAVVIGRSNIVGKPMAQLLLDKNA-------TVTLTHSR--------------------------TRNLAEVARKAD 203 (284)
T ss_pred CCCEEEEECCCCcCcHHHHHHHHHCCC-------EEEEECCC--------------------------CCCHHHHHhhCC
Confidence 467999999889999999999998775 67776321 124567789999
Q ss_pred EEEEecCCCC
Q 019990 84 IAVMVGGFPR 93 (332)
Q Consensus 84 iVi~~ag~~~ 93 (332)
+||...|.+.
T Consensus 204 IVI~avg~~~ 213 (284)
T PRK14179 204 ILVVAIGRGH 213 (284)
T ss_pred EEEEecCccc
Confidence 9999888653
|
|
| >PRK14173 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=94.46 E-value=0.16 Score=46.09 Aligned_cols=57 Identities=19% Similarity=0.328 Sum_probs=44.3
Q ss_pred CCcEEEEEcCCChhHHHHHHHHHhcccCCCCCCeEEEEEecccchhhhhhhHhhhhhhccCCccceEEeCCHHHHhCCCc
Q 019990 4 NPLRVLVTGAAGQIGYALVPMIARGIMLGPDQPVILHMLDIEPAAEALNGVKMELIDAAFPLLKGVVATTDVVEACKDVN 83 (332)
Q Consensus 4 ~~~kI~VtGaaG~IGs~l~~~L~~~~~~~~~~~~~i~l~D~~~~~~~~~~~~~dl~~~~~~~~~~v~~~~~~~~a~~~aD 83 (332)
..++|+|+|.+..||..++..|.+.+- .|.++... +.++.+.++.||
T Consensus 154 ~Gk~vvViGrS~iVGkPla~lL~~~~a-------TVtichs~--------------------------T~~l~~~~~~AD 200 (287)
T PRK14173 154 AGKEVVVVGRSNIVGKPLAALLLREDA-------TVTLAHSK--------------------------TQDLPAVTRRAD 200 (287)
T ss_pred CCCEEEEECCCCccHHHHHHHHHHCCC-------EEEEeCCC--------------------------CCCHHHHHhhCC
Confidence 467999999999999999999987653 67766542 124566788999
Q ss_pred EEEEecCCCC
Q 019990 84 IAVMVGGFPR 93 (332)
Q Consensus 84 iVi~~ag~~~ 93 (332)
+||..+|.|.
T Consensus 201 IvIsAvGkp~ 210 (287)
T PRK14173 201 VLVVAVGRPH 210 (287)
T ss_pred EEEEecCCcC
Confidence 9999988663
|
|
| >PF00899 ThiF: ThiF family; InterPro: IPR000594 Ubiquitin-activating enzyme (E1 enzyme) [, ] activates ubiquitin by first adenylating with ATP its C-terminal glycine residue and thereafter linking this residue to the side chain of a cysteine residue in E1, yielding an ubiquitin-E1 thiolester and free AMP | Back alignment and domain information |
|---|
Probab=94.45 E-value=0.058 Score=43.25 Aligned_cols=34 Identities=32% Similarity=0.547 Sum_probs=29.1
Q ss_pred CcEEEEEcCCChhHHHHHHHHHhcccCCCCCCeEEEEEecc
Q 019990 5 PLRVLVTGAAGQIGYALVPMIARGIMLGPDQPVILHMLDIE 45 (332)
Q Consensus 5 ~~kI~VtGaaG~IGs~l~~~L~~~~~~~~~~~~~i~l~D~~ 45 (332)
..||+|+| +|.+|+.++..|...|+ + ++.++|.+
T Consensus 2 ~~~v~iiG-~G~vGs~va~~L~~~Gv-~-----~i~lvD~d 35 (135)
T PF00899_consen 2 NKRVLIIG-AGGVGSEVAKNLARSGV-G-----KITLVDDD 35 (135)
T ss_dssp T-EEEEES-TSHHHHHHHHHHHHHTT-S-----EEEEEESS
T ss_pred CCEEEEEC-cCHHHHHHHHHHHHhCC-C-----ceeecCCc
Confidence 46899999 79999999999999886 2 89999974
|
Later the ubiquitin moiety is transferred to a cysteine residue on one of the many forms of ubiquitin- conjugating enzymes (E2). The family of ubiquitin-activating enzymes shares in its catalytic domain significant similarity with a large family of NAD/FAD-binding proteins. This domain is based on the common NAD/FAD-binding fold and finds members of several families, including UBA ubiquitin activating enzymes; the hesA/moeB/thiF family; NADH peroxidases; the LDH family; sarcosin oxidase; phytoene dehydrogenases; alanine dehydrogenases; hydroxyacyl-CoA dehydrogenases and many other NAD/FAD dependent dehydrogenases and oxidases.; GO: 0003824 catalytic activity; PDB: 1ZKM_D 1ZUD_3 1ZFN_D 1R4M_G 2NVU_A 1R4N_C 3DBR_A 3DBH_C 3DBL_G 1YOV_A .... |
| >PRK03562 glutathione-regulated potassium-efflux system protein KefC; Provisional | Back alignment and domain information |
|---|
Probab=94.43 E-value=0.35 Score=49.09 Aligned_cols=140 Identities=12% Similarity=0.173 Sum_probs=76.1
Q ss_pred CcEEEEEcCCChhHHHHHHHHHhcccCCCCCCeEEEEEecccchhhhhhhHhhhhhhccC-CccceEEeCCHHHH-hCCC
Q 019990 5 PLRVLVTGAAGQIGYALVPMIARGIMLGPDQPVILHMLDIEPAAEALNGVKMELIDAAFP-LLKGVVATTDVVEA-CKDV 82 (332)
Q Consensus 5 ~~kI~VtGaaG~IGs~l~~~L~~~~~~~~~~~~~i~l~D~~~~~~~~~~~~~dl~~~~~~-~~~~v~~~~~~~~a-~~~a 82 (332)
..+|.|+| .|.+|+.++..|.+.++ +++++|.+. ++.+ .+.+...+ +.+|.+..+-++++ +.++
T Consensus 400 ~~~vII~G-~Gr~G~~va~~L~~~g~-------~vvvID~d~--~~v~----~~~~~g~~v~~GDat~~~~L~~agi~~A 465 (621)
T PRK03562 400 QPRVIIAG-FGRFGQIVGRLLLSSGV-------KMTVLDHDP--DHIE----TLRKFGMKVFYGDATRMDLLESAGAAKA 465 (621)
T ss_pred cCcEEEEe-cChHHHHHHHHHHhCCC-------CEEEEECCH--HHHH----HHHhcCCeEEEEeCCCHHHHHhcCCCcC
Confidence 46899999 79999999999998775 789999864 2222 22221111 12333332223322 5688
Q ss_pred cEEEEecCCCCCCCCChhHHHhhhHHHHHHHHHHHHhhcCCCcEEEEEeCChhhHHHHHHHHCCCCCCCcEEEeecccHH
Q 019990 83 NIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEKHAAPNCKVLVVANPANTNALILKEFAPSIPAKNITCLTRLDHN 162 (332)
Q Consensus 83 DiVi~~ag~~~~~~~~~~~~~~~N~~~~~~i~~~i~~~~~~~~~viv~snp~~~~~~~~~~~~~~~~~~~i~~~t~l~~~ 162 (332)
|.||.+-+ .+ +.|. .++..+++.. |+.++++-++... ....+.+ ...+.+.--+.-.+.
T Consensus 466 ~~vvv~~~------d~-----~~n~----~i~~~ar~~~-p~~~iiaRa~d~~-~~~~L~~----~Gad~v~~e~~e~sl 524 (621)
T PRK03562 466 EVLINAID------DP-----QTSL----QLVELVKEHF-PHLQIIARARDVD-HYIRLRQ----AGVEKPERETFEGAL 524 (621)
T ss_pred CEEEEEeC------CH-----HHHH----HHHHHHHHhC-CCCeEEEEECCHH-HHHHHHH----CCCCEEehhhHhHHH
Confidence 98888732 11 2343 3445566654 7777665454322 1233333 122333333444455
Q ss_pred HHHHHHHHHcCCCCCCe
Q 019990 163 RAMGQISERLKVHVSDV 179 (332)
Q Consensus 163 r~~~~~a~~~~v~~~~v 179 (332)
++....-+.+|+++..+
T Consensus 525 ~l~~~~L~~lg~~~~~~ 541 (621)
T PRK03562 525 KSGRLVLESLGLGPYEA 541 (621)
T ss_pred HHHHHHHHHcCCCHHHH
Confidence 55556666667665443
|
|
| >PRK00045 hemA glutamyl-tRNA reductase; Reviewed | Back alignment and domain information |
|---|
Probab=94.43 E-value=0.15 Score=49.30 Aligned_cols=73 Identities=21% Similarity=0.278 Sum_probs=48.1
Q ss_pred CCcEEEEEcCCChhHHHHHHHHHhcccCCCCCCeEEEEEecccchhhhhhhHhhhhhhccCCccceEEeCCHHHHhCCCc
Q 019990 4 NPLRVLVTGAAGQIGYALVPMIARGIMLGPDQPVILHMLDIEPAAEALNGVKMELIDAAFPLLKGVVATTDVVEACKDVN 83 (332)
Q Consensus 4 ~~~kI~VtGaaG~IGs~l~~~L~~~~~~~~~~~~~i~l~D~~~~~~~~~~~~~dl~~~~~~~~~~v~~~~~~~~a~~~aD 83 (332)
..++|+|+| +|.+|..++..|...|. .++.+++++. +++.....++. .++....++.+++.++|
T Consensus 181 ~~~~vlViG-aG~iG~~~a~~L~~~G~------~~V~v~~r~~--~ra~~la~~~g-------~~~~~~~~~~~~l~~aD 244 (423)
T PRK00045 181 SGKKVLVIG-AGEMGELVAKHLAEKGV------RKITVANRTL--ERAEELAEEFG-------GEAIPLDELPEALAEAD 244 (423)
T ss_pred cCCEEEEEC-chHHHHHHHHHHHHCCC------CeEEEEeCCH--HHHHHHHHHcC-------CcEeeHHHHHHHhccCC
Confidence 457899999 69999999999987664 2788898853 22222221111 12222245567788999
Q ss_pred EEEEecCCC
Q 019990 84 IAVMVGGFP 92 (332)
Q Consensus 84 iVi~~ag~~ 92 (332)
+||.+.+.+
T Consensus 245 vVI~aT~s~ 253 (423)
T PRK00045 245 IVISSTGAP 253 (423)
T ss_pred EEEECCCCC
Confidence 999886654
|
|
| >PRK14188 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=94.39 E-value=0.17 Score=46.23 Aligned_cols=56 Identities=18% Similarity=0.364 Sum_probs=44.0
Q ss_pred CCcEEEEEcCCChhHHHHHHHHHhcccCCCCCCeEEEEEecccchhhhhhhHhhhhhhccCCccceEEeCCHHHHhCCCc
Q 019990 4 NPLRVLVTGAAGQIGYALVPMIARGIMLGPDQPVILHMLDIEPAAEALNGVKMELIDAAFPLLKGVVATTDVVEACKDVN 83 (332)
Q Consensus 4 ~~~kI~VtGaaG~IGs~l~~~L~~~~~~~~~~~~~i~l~D~~~~~~~~~~~~~dl~~~~~~~~~~v~~~~~~~~a~~~aD 83 (332)
..++|+|+|.+|.+|..++..|+..+. ++.+++.+. .++.+.++.||
T Consensus 157 ~Gk~V~viGrs~~mG~PmA~~L~~~g~-------tVtv~~~rT--------------------------~~l~e~~~~AD 203 (296)
T PRK14188 157 SGLNAVVIGRSNLVGKPMAQLLLAANA-------TVTIAHSRT--------------------------RDLPAVCRRAD 203 (296)
T ss_pred CCCEEEEEcCCcchHHHHHHHHHhCCC-------EEEEECCCC--------------------------CCHHHHHhcCC
Confidence 468999999999999999999998775 788886421 12456678899
Q ss_pred EEEEecCCC
Q 019990 84 IAVMVGGFP 92 (332)
Q Consensus 84 iVi~~ag~~ 92 (332)
+||.+.|.+
T Consensus 204 IVIsavg~~ 212 (296)
T PRK14188 204 ILVAAVGRP 212 (296)
T ss_pred EEEEecCCh
Confidence 999887654
|
|
| >PLN03129 NADP-dependent malic enzyme; Provisional | Back alignment and domain information |
|---|
Probab=94.38 E-value=0.13 Score=50.96 Aligned_cols=111 Identities=18% Similarity=0.272 Sum_probs=66.1
Q ss_pred CcEEEEEcCCChhHHHHHHHHHh-----cccCCCCCCeEEEEEecccchhhhhhhHhh-hhhhccCCccceEEeCCHHHH
Q 019990 5 PLRVLVTGAAGQIGYALVPMIAR-----GIMLGPDQPVILHMLDIEPAAEALNGVKME-LIDAAFPLLKGVVATTDVVEA 78 (332)
Q Consensus 5 ~~kI~VtGaaG~IGs~l~~~L~~-----~~~~~~~~~~~i~l~D~~~~~~~~~~~~~d-l~~~~~~~~~~v~~~~~~~~a 78 (332)
..||++.| +|..|..++..|+. .|+...+-..++.++|.+.. +.....| +.+...++..+.....++.++
T Consensus 321 d~riv~~G-AGsAgigia~ll~~~~~~~~Gls~eeA~~~i~~vD~~GL---i~~~r~~~l~~~k~~fa~~~~~~~~L~e~ 396 (581)
T PLN03129 321 DQRILFAG-AGEAGTGIAELIALAMSRQTGISEEEARKRIWLVDSKGL---VTKSRKDSLQPFKKPFAHDHEPGASLLEA 396 (581)
T ss_pred hceEEEEC-CCHHHHHHHHHHHHHHHhhcCCChhhhcCcEEEEcCCCe---EeCCCCccChHHHHHHHhhcccCCCHHHH
Confidence 46899999 69999999998876 24422112337899997541 1111111 221111122222223578999
Q ss_pred hCC--CcEEEEecCCCCCCCCChhHHHhhhHHHHHHHHHHHHhhcCCCcEEEEEeCCh
Q 019990 79 CKD--VNIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEKHAAPNCKVLVVANPA 134 (332)
Q Consensus 79 ~~~--aDiVi~~ag~~~~~~~~~~~~~~~N~~~~~~i~~~i~~~~~~~~~viv~snp~ 134 (332)
+++ +|++|=+.+.+ | .+ .+++++.+.+++ +..+|.-.|||.
T Consensus 397 v~~vkptvLIG~S~~~---g-----~F------t~evi~~Ma~~~-~rPIIFaLSNPt 439 (581)
T PLN03129 397 VKAIKPTVLIGLSGVG---G-----TF------TKEVLEAMASLN-ERPIIFALSNPT 439 (581)
T ss_pred HhccCCCEEEEecCCC---C-----CC------CHHHHHHHHhcC-CCCEEEECCCCC
Confidence 998 79888654432 1 11 246677777776 556777789996
|
|
| >PRK13656 trans-2-enoyl-CoA reductase; Provisional | Back alignment and domain information |
|---|
Probab=94.34 E-value=0.077 Score=50.17 Aligned_cols=33 Identities=24% Similarity=0.226 Sum_probs=26.2
Q ss_pred CCcEEEEEcCCChhHHH--HHHHHHhcccCCCCCCeEEEEEec
Q 019990 4 NPLRVLVTGAAGQIGYA--LVPMIARGIMLGPDQPVILHMLDI 44 (332)
Q Consensus 4 ~~~kI~VtGaaG~IGs~--l~~~L~~~~~~~~~~~~~i~l~D~ 44 (332)
.+++++||||++.+|.+ ++..| ..|. .+.+++.
T Consensus 40 ggK~aLVTGaSsGIGlA~~IA~al-~~GA-------~Vi~v~~ 74 (398)
T PRK13656 40 GPKKVLVIGASSGYGLASRIAAAF-GAGA-------DTLGVFF 74 (398)
T ss_pred CCCEEEEECCCchHhHHHHHHHHH-HcCC-------eEEEEec
Confidence 35799999999999999 78888 7664 5666664
|
|
| >COG0136 Asd Aspartate-semialdehyde dehydrogenase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=94.34 E-value=0.1 Score=48.16 Aligned_cols=24 Identities=33% Similarity=0.589 Sum_probs=21.7
Q ss_pred CcEEEEEcCCChhHHHHHHHHHhc
Q 019990 5 PLRVLVTGAAGQIGYALVPMIARG 28 (332)
Q Consensus 5 ~~kI~VtGaaG~IGs~l~~~L~~~ 28 (332)
+++|+|+||+|.||+.++..|.+.
T Consensus 1 ~~~VavvGATG~VG~~~~~~L~e~ 24 (334)
T COG0136 1 KLNVAVLGATGAVGQVLLELLEER 24 (334)
T ss_pred CcEEEEEeccchHHHHHHHHHHhc
Confidence 468999999999999999999874
|
|
| >cd01079 NAD_bind_m-THF_DH NAD binding domain of methylene-tetrahydrofolate dehydrogenase | Back alignment and domain information |
|---|
Probab=94.34 E-value=0.17 Score=43.19 Aligned_cols=77 Identities=10% Similarity=0.116 Sum_probs=49.0
Q ss_pred CCcEEEEEcCCChhHHHHHHHHHhcccCCCCCCeEEEEEecccchhhhhhhHhhhhhhccCCccceEE-eCCHHHHhCCC
Q 019990 4 NPLRVLVTGAAGQIGYALVPMIARGIMLGPDQPVILHMLDIEPAAEALNGVKMELIDAAFPLLKGVVA-TTDVVEACKDV 82 (332)
Q Consensus 4 ~~~kI~VtGaaG~IGs~l~~~L~~~~~~~~~~~~~i~l~D~~~~~~~~~~~~~dl~~~~~~~~~~v~~-~~~~~~a~~~a 82 (332)
..++|+|+|.+.-+|..++..|++.+- .|.++|++.......+. .+.|.. ..... ..++.+.++.|
T Consensus 61 ~GK~vvVIGrS~iVGkPla~lL~~~~A-------tVti~~~~~~~~~~~~~--~~~hs~----t~~~~~~~~l~~~~~~A 127 (197)
T cd01079 61 YGKTITIINRSEVVGRPLAALLANDGA-------RVYSVDINGIQVFTRGE--SIRHEK----HHVTDEEAMTLDCLSQS 127 (197)
T ss_pred CCCEEEEECCCccchHHHHHHHHHCCC-------EEEEEecCccccccccc--cccccc----ccccchhhHHHHHhhhC
Confidence 467999999999999999999988764 89999875311000000 011110 00000 11266778999
Q ss_pred cEEEEecCCCC
Q 019990 83 NIAVMVGGFPR 93 (332)
Q Consensus 83 DiVi~~ag~~~ 93 (332)
|+||...|.+.
T Consensus 128 DIVIsAvG~~~ 138 (197)
T cd01079 128 DVVITGVPSPN 138 (197)
T ss_pred CEEEEccCCCC
Confidence 99999988654
|
The NAD-binding domain of methylene-tetrahydrofolate dehydrogenase (m-THF DH). M-THF is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. M-THF DH is a component of an unusual monofunctional enzyme; in eukaryotes, m-THF DH is typically found as part of a multifunctional protein. NADP-dependent m-THF DHs in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional DH/cyclodrolase form. In bacteria, monofunctional DH, as well as bifunctional DH/cyclodrolase are found. In addition, yeast (S. cerevisiae) also express an monofunctional DH. This family contains only the monofunctional |
| >PF07991 IlvN: Acetohydroxy acid isomeroreductase, catalytic domain; InterPro: IPR013116 Acetohydroxy acid isomeroreductase catalyses the conversion of acetohydroxy acids into dihydroxy valerates | Back alignment and domain information |
|---|
Probab=94.33 E-value=0.2 Score=41.36 Aligned_cols=66 Identities=20% Similarity=0.115 Sum_probs=41.1
Q ss_pred CCcEEEEEcCCChhHHHHHHHHHhcccCCCCCCeEEEEEecccchhhhhhhHhhhhhhccCCccceEEeCCHHHHhCCCc
Q 019990 4 NPLRVLVTGAAGQIGYALVPMIARGIMLGPDQPVILHMLDIEPAAEALNGVKMELIDAAFPLLKGVVATTDVVEACKDVN 83 (332)
Q Consensus 4 ~~~kI~VtGaaG~IGs~l~~~L~~~~~~~~~~~~~i~l~D~~~~~~~~~~~~~dl~~~~~~~~~~v~~~~~~~~a~~~aD 83 (332)
+.++|+|+| -|.-|.+.+..|...++ +|.+-.+.... ....+ ..+ .+. ..+..++.+.+|
T Consensus 3 ~~k~IAViG-yGsQG~a~AlNLrDSG~-------~V~Vglr~~s~--s~~~A--~~~-------Gf~-v~~~~eAv~~aD 62 (165)
T PF07991_consen 3 KGKTIAVIG-YGSQGHAHALNLRDSGV-------NVIVGLREGSA--SWEKA--KAD-------GFE-VMSVAEAVKKAD 62 (165)
T ss_dssp CTSEEEEES--SHHHHHHHHHHHHCC--------EEEEEE-TTCH--HHHHH--HHT-------T-E-CCEHHHHHHC-S
T ss_pred CCCEEEEEC-CChHHHHHHHHHHhCCC-------CEEEEecCCCc--CHHHH--HHC-------CCe-eccHHHHHhhCC
Confidence 467999999 69999999999999886 67666654321 11111 111 122 236788999999
Q ss_pred EEEEec
Q 019990 84 IAVMVG 89 (332)
Q Consensus 84 iVi~~a 89 (332)
+|+++.
T Consensus 63 vV~~L~ 68 (165)
T PF07991_consen 63 VVMLLL 68 (165)
T ss_dssp EEEE-S
T ss_pred EEEEeC
Confidence 999973
|
This reaction is the second in the synthetic pathway of the essential branched side chain amino acids valine and isoleucine.; GO: 0004455 ketol-acid reductoisomerase activity, 0008652 cellular amino acid biosynthetic process, 0055114 oxidation-reduction process; PDB: 1QMG_A 1YVE_J 3FR8_B 3FR7_A 1NP3_C 1YRL_C. |
| >KOG0409 consensus Predicted dehydrogenase [General function prediction only] | Back alignment and domain information |
|---|
Probab=94.33 E-value=0.15 Score=46.12 Aligned_cols=67 Identities=16% Similarity=0.229 Sum_probs=49.1
Q ss_pred CcEEEEEcCCChhHHHHHHHHHhcccCCCCCCeEEEEEecccchhhhhhhHhhhhhhccCCccceEEeCCHHHHhCCCcE
Q 019990 5 PLRVLVTGAAGQIGYALVPMIARGIMLGPDQPVILHMLDIEPAAEALNGVKMELIDAAFPLLKGVVATTDVVEACKDVNI 84 (332)
Q Consensus 5 ~~kI~VtGaaG~IGs~l~~~L~~~~~~~~~~~~~i~l~D~~~~~~~~~~~~~dl~~~~~~~~~~v~~~~~~~~a~~~aDi 84 (332)
.++|..+| -|..|++.+.+|+..|+ .|+++|+.. + ...++.+.. -+......|..+++|+
T Consensus 35 ~~~iGFIG-LG~MG~~M~~nLik~G~-------kVtV~dr~~--~----k~~~f~~~G------a~v~~sPaeVae~sDv 94 (327)
T KOG0409|consen 35 KTRIGFIG-LGNMGSAMVSNLIKAGY-------KVTVYDRTK--D----KCKEFQEAG------ARVANSPAEVAEDSDV 94 (327)
T ss_pred cceeeEEe-eccchHHHHHHHHHcCC-------EEEEEeCcH--H----HHHHHHHhc------hhhhCCHHHHHhhcCE
Confidence 57899999 99999999999999987 899999853 2 223444321 1223455677789999
Q ss_pred EEEecCC
Q 019990 85 AVMVGGF 91 (332)
Q Consensus 85 Vi~~ag~ 91 (332)
||...+.
T Consensus 95 vitmv~~ 101 (327)
T KOG0409|consen 95 VITMVPN 101 (327)
T ss_pred EEEEcCC
Confidence 9987654
|
|
| >PRK08306 dipicolinate synthase subunit A; Reviewed | Back alignment and domain information |
|---|
Probab=94.30 E-value=0.22 Score=45.64 Aligned_cols=68 Identities=18% Similarity=0.147 Sum_probs=45.8
Q ss_pred CCcEEEEEcCCChhHHHHHHHHHhcccCCCCCCeEEEEEecccchhhhhhhHhhhhhhccCCccceEEeCCHHHHhCCCc
Q 019990 4 NPLRVLVTGAAGQIGYALVPMIARGIMLGPDQPVILHMLDIEPAAEALNGVKMELIDAAFPLLKGVVATTDVVEACKDVN 83 (332)
Q Consensus 4 ~~~kI~VtGaaG~IGs~l~~~L~~~~~~~~~~~~~i~l~D~~~~~~~~~~~~~dl~~~~~~~~~~v~~~~~~~~a~~~aD 83 (332)
..+||+|+| .|.+|..++..|...|. +|.++|++.. .. ....++ . .......++.+.++++|
T Consensus 151 ~g~kvlViG-~G~iG~~~a~~L~~~Ga-------~V~v~~r~~~--~~-~~~~~~---G----~~~~~~~~l~~~l~~aD 212 (296)
T PRK08306 151 HGSNVLVLG-FGRTGMTLARTLKALGA-------NVTVGARKSA--HL-ARITEM---G----LSPFHLSELAEEVGKID 212 (296)
T ss_pred CCCEEEEEC-CcHHHHHHHHHHHHCCC-------EEEEEECCHH--HH-HHHHHc---C----CeeecHHHHHHHhCCCC
Confidence 368999999 69999999999988774 8999998632 11 111111 0 01111235667789999
Q ss_pred EEEEec
Q 019990 84 IAVMVG 89 (332)
Q Consensus 84 iVi~~a 89 (332)
+||.+.
T Consensus 213 iVI~t~ 218 (296)
T PRK08306 213 IIFNTI 218 (296)
T ss_pred EEEECC
Confidence 999974
|
|
| >PRK15469 ghrA bifunctional glyoxylate/hydroxypyruvate reductase A; Provisional | Back alignment and domain information |
|---|
Probab=94.30 E-value=0.16 Score=46.93 Aligned_cols=64 Identities=9% Similarity=0.132 Sum_probs=45.5
Q ss_pred CCcEEEEEcCCChhHHHHHHHHHhcccCCCCCCeEEEEEecccchhhhhhhHhhhhhhccCCccceEEeCCHHHHhCCCc
Q 019990 4 NPLRVLVTGAAGQIGYALVPMIARGIMLGPDQPVILHMLDIEPAAEALNGVKMELIDAAFPLLKGVVATTDVVEACKDVN 83 (332)
Q Consensus 4 ~~~kI~VtGaaG~IGs~l~~~L~~~~~~~~~~~~~i~l~D~~~~~~~~~~~~~dl~~~~~~~~~~v~~~~~~~~a~~~aD 83 (332)
..++|+|+| .|.||+.++..|..-|. +|..+|.... ...+ .. .+....++.+.+++||
T Consensus 135 ~g~tvgIvG-~G~IG~~vA~~l~afG~-------~V~~~~~~~~--~~~~----~~--------~~~~~~~l~e~l~~aD 192 (312)
T PRK15469 135 EDFTIGILG-AGVLGSKVAQSLQTWGF-------PLRCWSRSRK--SWPG----VQ--------SFAGREELSAFLSQTR 192 (312)
T ss_pred CCCEEEEEC-CCHHHHHHHHHHHHCCC-------EEEEEeCCCC--CCCC----ce--------eecccccHHHHHhcCC
Confidence 357899999 89999999999998775 8889986421 1100 00 0111346788899999
Q ss_pred EEEEec
Q 019990 84 IAVMVG 89 (332)
Q Consensus 84 iVi~~a 89 (332)
+|+++.
T Consensus 193 vvv~~l 198 (312)
T PRK15469 193 VLINLL 198 (312)
T ss_pred EEEECC
Confidence 999874
|
|
| >TIGR00978 asd_EA aspartate-semialdehyde dehydrogenase (non-peptidoglycan organisms) | Back alignment and domain information |
|---|
Probab=94.26 E-value=0.17 Score=47.45 Aligned_cols=24 Identities=38% Similarity=0.632 Sum_probs=21.2
Q ss_pred cEEEEEcCCChhHHHHHHHHHhcc
Q 019990 6 LRVLVTGAAGQIGYALVPMIARGI 29 (332)
Q Consensus 6 ~kI~VtGaaG~IGs~l~~~L~~~~ 29 (332)
+||+|+||+|++|++++..|...+
T Consensus 1 ~kVaIvGatG~~G~~L~~~l~~~~ 24 (341)
T TIGR00978 1 MRVAVLGATGLVGQKFVKLLAKHP 24 (341)
T ss_pred CEEEEECCCCHHHHHHHHHHHhCC
Confidence 479999999999999999887755
|
Two closely related families of aspartate-semialdehyde dehydrogenase are found. They differ by a deep split in phylogenetic and percent identity trees and in gap patterns. Separate models are built for the two types in order to exclude the USG-1 protein, found in several species, which is specifically related to the Bacillus subtilis type of aspartate-semialdehyde dehydrogenase. Members of this type are found primarily in organisms that lack peptidoglycan. |
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
| ID | Alignment Graph | Length |
Definition |
E-value | |
| Query | 332 | ||||
| 4mdh_A | 334 | Refined Crystal Structure Of Cytoplasmic Malate Deh | 1e-103 | ||
| 5mdh_A | 333 | Crystal Structure Of Ternary Complex Of Porcine Cyt | 1e-103 | ||
| 1iz9_A | 327 | Crystal Structure Of Malate Dehydrogenase From Ther | 3e-87 | ||
| 1bmd_A | 327 | Determinants Of Protein Thermostability Observed In | 3e-87 | ||
| 1wze_A | 327 | Structural Basis For Alteration Of Cofactor Specifi | 7e-87 | ||
| 1b8p_A | 329 | Malate Dehydrogenase From Aquaspirillum Arcticum Le | 1e-86 | ||
| 1bdm_A | 327 | The Structure At 1.8 Angstroms Resolution Of A Sing | 2e-86 | ||
| 3d5t_A | 331 | Crystal Structure Of Malate Dehydrogenase From Burk | 2e-86 | ||
| 4h7p_A | 345 | Crystal Structure Of A Putative Cytosolic Malate De | 2e-86 | ||
| 1civ_A | 385 | Chloroplast Nadp-Dependent Malate Dehydrogenase Fro | 2e-61 | ||
| 7mdh_A | 375 | Structural Basis For Light Acitvation Of A Chloropl | 4e-60 | ||
| 3fi9_A | 343 | Crystal Structure Of Malate Dehydrogenase From Porp | 2e-16 | ||
| 3gvh_A | 324 | Crystal Structure Of LactateMALATE DEHYDROGENASE FR | 1e-09 | ||
| 3nep_X | 314 | 1.55a Resolution Structure Of Malate Dehydrogenase | 2e-09 | ||
| 1hyg_A | 313 | Crystal Structure Of Mj0490 Gene Product, The Famil | 1e-08 | ||
| 2dfd_A | 342 | Crystal Structure Of Human Malate Dehydrogenase Typ | 1e-07 | ||
| 1gv1_A | 310 | Structural Basis For Thermophilic Protein Stability | 1e-07 | ||
| 3p7m_A | 321 | Structure Of Putative Lactate Dehydrogenase From Fr | 2e-07 | ||
| 1gv0_A | 310 | Structural Basis For Thermophilic Protein Stability | 3e-07 | ||
| 1guz_A | 310 | Structural Basis For Thermophilic Protein Stability | 5e-07 | ||
| 2hjr_A | 328 | Crystal Structure Of Cryptosporidium Parvum Malate | 6e-07 | ||
| 1mld_A | 314 | Refined Structure Of Mitochondrial Malate Dehydroge | 8e-07 | ||
| 1ez4_A | 318 | Crystal Structure Of Non-Allosteric L-Lactate Dehyd | 9e-07 | ||
| 3tl2_A | 315 | Crystal Structure Of Bacillus Anthracis Str. Ames M | 1e-06 | ||
| 2v65_A | 331 | Apo Ldh From The Psychrophile C. Gunnari Length = 3 | 1e-06 | ||
| 1uxh_A | 309 | Large Improvement In The Thermal Stability Of A Tet | 2e-06 | ||
| 1uxi_A | 309 | Large Improvement In The Thermal Stability Of A Tet | 2e-06 | ||
| 1guy_A | 309 | Structural Basis For Thermophilic Protein Stability | 2e-06 | ||
| 1y6j_A | 318 | L-Lactate Dehydrogenase From Clostridium Thermocell | 2e-06 | ||
| 4e0b_A | 313 | 2.17 Angstrom Resolution Crystal Structure Of Malat | 5e-06 | ||
| 1v6a_A | 332 | Crystal Structure Of L-Lactate Dehydrogenase From C | 5e-06 | ||
| 5ldh_A | 334 | Structure Of The Active Ternary Complex Of Pig Hear | 6e-06 | ||
| 1ur5_A | 309 | Stabilization Of A Tetrameric Malate Dehydrogenase | 7e-06 | ||
| 9ldt_A | 332 | Design And Synthesis Of New Enzymes Based On The La | 8e-06 | ||
| 2pwz_A | 312 | Crystal Structure Of The Apo Form Of E.Coli Malate | 1e-05 | ||
| 3pqd_A | 326 | Crystal Structure Of L-Lactate Dehydrogenase From B | 1e-05 | ||
| 1emd_A | 312 | Crystal Structure Of A Ternary Complex Of Escherich | 1e-05 | ||
| 3h3f_A | 331 | Rabbit Muscle L-Lactate Dehydrogenase In Complex Wi | 2e-05 | ||
| 1i10_A | 331 | Human Muscle L-Lactate Dehydrogenase M Chain, Terna | 2e-05 | ||
| 4ajp_A | 337 | Human Ldha In Complex With 2-((4-(4-((3-((2-Methyl- | 2e-05 | ||
| 1t2f_A | 333 | Human B Lactate Dehydrogenase Complexed With Nad+ A | 2e-05 | ||
| 3pqe_A | 326 | Crystal Structure Of L-Lactate Dehydrogenase From B | 3e-05 | ||
| 1i0z_A | 333 | Human Heart L-Lactate Dehydrogenase H Chain, Ternar | 3e-05 | ||
| 2zqy_A | 326 | T-State Structure Of Allosteric L-Lactate Dehydroge | 3e-05 | ||
| 1ib6_A | 312 | Crystal Structure Of R153c E. Coli Malate Dehydroge | 3e-05 | ||
| 1llc_A | 325 | Structure Determination Of The Allosteric L-Lactate | 4e-05 | ||
| 6ldh_A | 330 | Refined Crystal Structure Of Dogfish M4 Apo-Lactate | 5e-05 | ||
| 1ldm_A | 329 | Refined Crystal Structure Of Dogfish M4 Apo-Lactate | 5e-05 | ||
| 4aj1_A | 331 | Rat Ldha In Complex With N-(2-(Methylamino)-1,3- Be | 6e-05 | ||
| 4aj4_A | 332 | Rat Ldha In Complex With 4-((2-Allylsulfanyl-1,3-Be | 7e-05 | ||
| 3vku_A | 326 | Penta Mutant Of Lactobacillus Casei Lactate Dehydro | 1e-04 | ||
| 3d0o_A | 317 | Crystal Structure Of Lactate Dehydrogenase From Sta | 2e-04 | ||
| 3h3j_A | 317 | Crystal Structure Of Lactate Dehydrogenase Mutant ( | 2e-04 | ||
| 1ldb_A | 317 | Structure Determination And Refinement Of Bacillus | 4e-04 | ||
| 1ldn_A | 316 | Structure Of A Ternary Complex Of An Allosteric Lac | 4e-04 | ||
| 2x0i_A | 294 | 2.9 A Resolution Structure Of Malate Dehydrogenase | 4e-04 | ||
| 2ldx_A | 331 | Characterization Of The Antigenic Sites On The Refi | 5e-04 | ||
| 2x0r_A | 304 | R207s,R292s Mutant Of Malate Dehydrogenase From The | 5e-04 | ||
| 1hlp_A | 303 | Structural Features Stabilizing Halophilic Malate D | 5e-04 | ||
| 1o6z_A | 303 | 1.95 A Resolution Structure Of (r207s,r292s) Mutant | 5e-04 | ||
| 2j5k_A | 304 | 2.0 A Resolution Structure Of The Wild Type Malate | 5e-04 | ||
| 2hlp_A | 303 | Crystal Structure Of The E267r Mutant Of A Halophil | 5e-04 |
| >pdb|4MDH|A Chain A, Refined Crystal Structure Of Cytoplasmic Malate Dehydrogenase At 2.5-Angstroms Resolution Length = 334 | Back alignment and structure |
|
| >pdb|5MDH|A Chain A, Crystal Structure Of Ternary Complex Of Porcine Cytoplasmic Malate Dehydrogenase Alpha-Ketomalonate And Tnad At 2.4 Angstroms Resolution Length = 333 | Back alignment and structure |
|
| >pdb|1IZ9|A Chain A, Crystal Structure Of Malate Dehydrogenase From Thermus Thermophilus Hb8 Length = 327 | Back alignment and structure |
|
| >pdb|1BMD|A Chain A, Determinants Of Protein Thermostability Observed In The 1.9 Angstroms Crystal Structure Of Malate Dehydrogenase From The Thermophilic Bacterium Thermus Flavus Length = 327 | Back alignment and structure |
|
| >pdb|1WZE|A Chain A, Structural Basis For Alteration Of Cofactor Specificity Of Malate Dehydrogenase From Thermus Flavus Length = 327 | Back alignment and structure |
|
| >pdb|1B8P|A Chain A, Malate Dehydrogenase From Aquaspirillum Arcticum Length = 329 | Back alignment and structure |
|
| >pdb|1BDM|A Chain A, The Structure At 1.8 Angstroms Resolution Of A Single Site Mutant (T189i) Of Malate Dehydrogenase From Thermus Flavus With Increased Enzymatic Activity Length = 327 | Back alignment and structure |
|
| >pdb|3D5T|A Chain A, Crystal Structure Of Malate Dehydrogenase From Burkholderia Pseudomallei Length = 331 | Back alignment and structure |
|
| >pdb|4H7P|A Chain A, Crystal Structure Of A Putative Cytosolic Malate Dehydrogenase From Leishmania Major Friedlin Length = 345 | Back alignment and structure |
|
| >pdb|1CIV|A Chain A, Chloroplast Nadp-Dependent Malate Dehydrogenase From Flaveria Bidentis Length = 385 | Back alignment and structure |
|
| >pdb|7MDH|A Chain A, Structural Basis For Light Acitvation Of A Chloroplast Enzyme. The Structure Of Sorghum Nadp-Malate Dehydrogenase In Its Oxidized Form Length = 375 | Back alignment and structure |
|
| >pdb|3FI9|A Chain A, Crystal Structure Of Malate Dehydrogenase From Porphyromonas Gingivalis Length = 343 | Back alignment and structure |
|
| >pdb|3GVH|A Chain A, Crystal Structure Of LactateMALATE DEHYDROGENASE FROM Brucella Melitensis Length = 324 | Back alignment and structure |
|
| >pdb|3NEP|X Chain X, 1.55a Resolution Structure Of Malate Dehydrogenase From Salinibacter Ruber Length = 314 | Back alignment and structure |
|
| >pdb|1HYG|A Chain A, Crystal Structure Of Mj0490 Gene Product, The Family Of LactateMALATE DEHYDROGENASE Length = 313 | Back alignment and structure |
|
| >pdb|2DFD|A Chain A, Crystal Structure Of Human Malate Dehydrogenase Type 2 Length = 342 | Back alignment and structure |
|
| >pdb|1GV1|A Chain A, Structural Basis For Thermophilic Protein Stability: Structures Of Thermophilic And Mesophilic Malate Dehydrogenases Length = 310 | Back alignment and structure |
|
| >pdb|3P7M|A Chain A, Structure Of Putative Lactate Dehydrogenase From Francisella Tularensis Subsp. Tularensis Schu S4 Length = 321 | Back alignment and structure |
|
| >pdb|1GV0|A Chain A, Structural Basis For Thermophilic Protein Stability: Structures Of Thermophilic And Mesophilic Malate Dehydrogenases Length = 310 | Back alignment and structure |
|
| >pdb|1GUZ|A Chain A, Structural Basis For Thermophilic Protein Stability: Structures Of Thermophilic And Mesophilic Malate Dehydrogenases Length = 310 | Back alignment and structure |
|
| >pdb|2HJR|A Chain A, Crystal Structure Of Cryptosporidium Parvum Malate Dehydrogenase Length = 328 | Back alignment and structure |
|
| >pdb|1MLD|A Chain A, Refined Structure Of Mitochondrial Malate Dehydrogenase From Porcine Heart And The Consensus Structure For Dicarboxylic Acid Oxidoreductases Length = 314 | Back alignment and structure |
|
| >pdb|1EZ4|A Chain A, Crystal Structure Of Non-Allosteric L-Lactate Dehydrogenase From Lactobacillus Pentosus At 2.3 Angstrom Resolution Length = 318 | Back alignment and structure |
|
| >pdb|3TL2|A Chain A, Crystal Structure Of Bacillus Anthracis Str. Ames Malate Dehydrogenase In Closed Conformation Length = 315 | Back alignment and structure |
|
| >pdb|2V65|A Chain A, Apo Ldh From The Psychrophile C. Gunnari Length = 331 | Back alignment and structure |
|
| >pdb|1UXH|A Chain A, Large Improvement In The Thermal Stability Of A Tetrameric Malate Dehydrogenase By Single Point Mutations At The Dimer-Dimer Interface Length = 309 | Back alignment and structure |
|
| >pdb|1UXI|A Chain A, Large Improvement In The Thermal Stability Of A Tetrameric Malate Dehydrogenase By Single Point Mutations At The Dimer-Dimer Interface Length = 309 | Back alignment and structure |
|
| >pdb|1GUY|A Chain A, Structural Basis For Thermophilic Protein Stability: Structures Of Thermophilic And Mesophilic Malate Dehydrogenases Length = 309 | Back alignment and structure |
|
| >pdb|1Y6J|A Chain A, L-Lactate Dehydrogenase From Clostridium Thermocellum Cth-1135 Length = 318 | Back alignment and structure |
|
| >pdb|4E0B|A Chain A, 2.17 Angstrom Resolution Crystal Structure Of Malate Dehydrogenase From Vibrio Vulnificus Cmcp6 Length = 313 | Back alignment and structure |
|
| >pdb|1V6A|A Chain A, Crystal Structure Of L-Lactate Dehydrogenase From Cyprinus Carpio Length = 332 | Back alignment and structure |
|
| >pdb|5LDH|A Chain A, Structure Of The Active Ternary Complex Of Pig Heart Lactate Dehydrogenase With S-Lac-Nad At 2.7 Angstroms Resolution Length = 334 | Back alignment and structure |
|
| >pdb|1UR5|A Chain A, Stabilization Of A Tetrameric Malate Dehydrogenase By Introduction Of A Disulfide Bridge At The DimerDIMER Interface Length = 309 | Back alignment and structure |
|
| >pdb|9LDT|A Chain A, Design And Synthesis Of New Enzymes Based On The Lactate Dehydrogenase Framework Length = 332 | Back alignment and structure |
|
| >pdb|2PWZ|A Chain A, Crystal Structure Of The Apo Form Of E.Coli Malate Dehydrogenase Length = 312 | Back alignment and structure |
|
| >pdb|3PQD|A Chain A, Crystal Structure Of L-Lactate Dehydrogenase From Bacillus Subtilis Complexed With Fbp And Nad+ Length = 326 | Back alignment and structure |
|
| >pdb|1EMD|A Chain A, Crystal Structure Of A Ternary Complex Of Escherichia Coli Malate Dehydrogenase, Citrate And Nad At 1.9 Angstroms Resolution Length = 312 | Back alignment and structure |
|
| >pdb|3H3F|A Chain A, Rabbit Muscle L-Lactate Dehydrogenase In Complex With Nadh And Oxamate Length = 331 | Back alignment and structure |
|
| >pdb|1I10|A Chain A, Human Muscle L-Lactate Dehydrogenase M Chain, Ternary Complex With Nadh And Oxamate Length = 331 | Back alignment and structure |
|
| >pdb|4AJP|A Chain A, Human Ldha In Complex With 2-((4-(4-((3-((2-Methyl-1,3- Benzothiazol-6yl)amino)-3-Oxo-Propyl)amino)-4-Oxo-Butyl) Phenyl)methyl)propanedioic Acid Length = 337 | Back alignment and structure |
|
| >pdb|1T2F|A Chain A, Human B Lactate Dehydrogenase Complexed With Nad+ And 4- Hydroxy-1,2,5-Oxadiazole-3-Carboxylic Acid Length = 333 | Back alignment and structure |
|
| >pdb|3PQE|A Chain A, Crystal Structure Of L-Lactate Dehydrogenase From Bacillus Subtilis With H171c Mutation Length = 326 | Back alignment and structure |
|
| >pdb|1I0Z|A Chain A, Human Heart L-Lactate Dehydrogenase H Chain, Ternary Complex With Nadh And Oxamate Length = 333 | Back alignment and structure |
|
| >pdb|2ZQY|A Chain A, T-State Structure Of Allosteric L-Lactate Dehydrogenase From Lactobacillus Casei Length = 326 | Back alignment and structure |
|
| >pdb|1IB6|A Chain A, Crystal Structure Of R153c E. Coli Malate Dehydrogenase Length = 312 | Back alignment and structure |
|
| >pdb|1LLC|A Chain A, Structure Determination Of The Allosteric L-Lactate Dehydrogenase From Lactobacillus Casei At 3.0 Angstroms Resolution Length = 325 | Back alignment and structure |
|
| >pdb|6LDH|A Chain A, Refined Crystal Structure Of Dogfish M4 Apo-Lactate Dehydrogenase Length = 330 | Back alignment and structure |
|
| >pdb|1LDM|A Chain A, Refined Crystal Structure Of Dogfish M4 Apo-Lactate Dehydrogenase Length = 329 | Back alignment and structure |
|
| >pdb|4AJ1|A Chain A, Rat Ldha In Complex With N-(2-(Methylamino)-1,3- Benzothiazol-6-Yl)acetamide Length = 331 | Back alignment and structure |
|
| >pdb|4AJ4|A Chain A, Rat Ldha In Complex With 4-((2-Allylsulfanyl-1,3-Benzothizol-6-Yl) Amino)-4-Oxo-Butanoic Acid Length = 332 | Back alignment and structure |
|
| >pdb|3VKU|A Chain A, Penta Mutant Of Lactobacillus Casei Lactate Dehydrogenase Length = 326 | Back alignment and structure |
|
| >pdb|3D0O|A Chain A, Crystal Structure Of Lactate Dehydrogenase From Staphylococcus Aureus Length = 317 | Back alignment and structure |
|
| >pdb|3H3J|A Chain A, Crystal Structure Of Lactate Dehydrogenase Mutant (A85r) Fro Staphylococcus Aureus Complexed With Nad And Pyruvate Length = 317 | Back alignment and structure |
|
| >pdb|1LDB|A Chain A, Structure Determination And Refinement Of Bacillus Stearothermophilus Lactate Dehydrogenase Length = 317 | Back alignment and structure |
|
| >pdb|1LDN|A Chain A, Structure Of A Ternary Complex Of An Allosteric Lactate Dehydrogenase From Bacillus Stearothermophilus At 2.5 Angstroms Resolution Length = 316 | Back alignment and structure |
|
| >pdb|2X0I|A Chain A, 2.9 A Resolution Structure Of Malate Dehydrogenase From Archaeoglobus Fulgidus In Complex With Nadh Length = 294 | Back alignment and structure |
|
| >pdb|2LDX|A Chain A, Characterization Of The Antigenic Sites On The Refined 3- Angstroms Resolution Structure Of Mouse Testicular Lactate Dehydrogenase C4 Length = 331 | Back alignment and structure |
|
| >pdb|2X0R|A Chain A, R207s,R292s Mutant Of Malate Dehydrogenase From The Halophilic Archaeon Haloarcula Marismortui (Holo Form) Length = 304 | Back alignment and structure |
|
| >pdb|1HLP|A Chain A, Structural Features Stabilizing Halophilic Malate Dehydrogenase From An Archaebacterium Length = 303 | Back alignment and structure |
|
| >pdb|1O6Z|A Chain A, 1.95 A Resolution Structure Of (r207s,r292s) Mutant Of Malate Dehydrogenase From The Halophilic Archaeon Haloarcula Marismortui (holo Form) Length = 303 | Back alignment and structure |
|
| >pdb|2J5K|A Chain A, 2.0 A Resolution Structure Of The Wild Type Malate Dehydrogenase From Haloarcula Marismortui (radiation Damage Series) Length = 304 | Back alignment and structure |
|
| >pdb|2HLP|A Chain A, Crystal Structure Of The E267r Mutant Of A Halophilic Malate Dehydrogenase In The Apo Form Length = 303 | Back alignment and structure |
|
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >1b8p_A Protein (malate dehydrogenase); oxidoreductase; 1.90A {Aquaspirillum arcticum} SCOP: c.2.1.5 d.162.1.1 PDB: 1b8u_A* 1b8v_A* 3d5t_A Length = 329 | Back alignment and structure |
|---|
Score = 495 bits (1276), Expect = e-178
Identities = 174/333 (52%), Positives = 225/333 (67%), Gaps = 7/333 (2%)
Query: 1 MAKNPLRVLVTGAAGQIGYALVPMIARGIMLGPDQPVILHMLDI--EPAAEALNGVKMEL 58
MAK P+RV VTGAAGQI Y+L+ IA G MLG DQPVIL +L+I E A +AL GV ME+
Sbjct: 1 MAKTPMRVAVTGAAGQICYSLLFRIANGDMLGKDQPVILQLLEIPNEKAQKALQGVMMEI 60
Query: 59 IDAAFPLLKGVVATTDVVEACKDVNIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALE 118
D AFPLL G+ A D + A KD ++A++VG PR GMERKD++ N I+ Q A++
Sbjct: 61 DDCAFPLLAGMTAHADPMTAFKDADVALLVGARPRGPGMERKDLLEANAQIFTVQGKAID 120
Query: 119 KHAAPNCKVLVVANPANTNALILKEFAPSIPAKNITCLTRLDHNRAMGQISERLKVHVSD 178
A+ N KVLVV NPANTNA I + APS+PAKN T + RLDHNRA+ QI+ + VS
Sbjct: 121 AVASRNIKVLVVGNPANTNAYIAMKSAPSLPAKNFTAMLRLDHNRALSQIAAKTGKPVSS 180
Query: 179 VKNVIIWGNHSSTQYPDVNHATVTTSKGEKPVREAVADDNWLNTEFITTVQQRGAAIIKA 238
++ + +WGNHS T Y D +A + V++ + DD W F+ TV +RGAAII A
Sbjct: 181 IEKLFVWGNHSPTMYADYRYAQI----DGASVKDMINDDAWNRDTFLPTVGKRGAAIIDA 236
Query: 239 RKLSSALSAASSACDHIRDWVLGTPKGTWVSMGVYSDGSYGIPEGLIYSFPVTCEKGEWS 298
R +SSA SAA++A DHI DWVLGT G W +MG+ SDGSYGIPEG+I+ FPVT E GE+
Sbjct: 237 RGVSSAASAANAAIDHIHDWVLGTA-GKWTTMGIPSDGSYGIPEGVIFGFPVTTENGEYK 295
Query: 299 IVKGLKVDEFSRAKMDATAEELAEEKTLAYSCL 331
IV+GL +D FS+ +++ T EL EE+ L
Sbjct: 296 IVQGLSIDAFSQERINVTLNELLEEQNGVQHLL 328
|
| >1y7t_A Malate dehydrogenase; NAD-dependent-MDH-NADPH complex, oxidoreductase; HET: NDP; 1.65A {Thermus thermophilus} SCOP: c.2.1.5 d.162.1.1 PDB: 1iz9_A* 2cvq_A* 1bmd_A* 1bdm_A* 1wze_A* 1wzi_A* Length = 327 | Back alignment and structure |
|---|
Score = 493 bits (1270), Expect = e-177
Identities = 174/322 (54%), Positives = 224/322 (69%), Gaps = 5/322 (1%)
Query: 3 KNPLRVLVTGAAGQIGYALVPMIARGIMLGPDQPVILHMLDIEPAAEALNGVKMELIDAA 62
K P+RV VTGAAGQIGY+L+ IA G MLG DQPVIL +L+I A +AL GV MEL D A
Sbjct: 2 KAPVRVAVTGAAGQIGYSLLFRIAAGEMLGKDQPVILQLLEIPQAMKALEGVVMELEDCA 61
Query: 63 FPLLKGVVATTDVVEACKDVNIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEKHAA 122
FPLL G+ AT D A KD + A++VG PRK GMER+D++ N I+ Q AL + A
Sbjct: 62 FPLLAGLEATDDPKVAFKDADYALLVGAAPRKAGMERRDLLQVNGKIFTEQGRALAEVAK 121
Query: 123 PNCKVLVVANPANTNALILKEFAPSIPAKNITCLTRLDHNRAMGQISERLKVHVSDVKNV 182
+ KVLVV NPANTNALI + AP + +N T +TRLDHNRA Q++++ V ++ +
Sbjct: 122 KDVKVLVVGNPANTNALIAYKNAPGLNPRNFTAMTRLDHNRAKAQLAKKTGTGVDRIRRM 181
Query: 183 IIWGNHSSTQYPDVNHATVTTSKGEKPVREAVADDNWLNTEFITTVQQRGAAIIKARKLS 242
+WGNHSST +PD+ HA V +P E V D W FI TV QRGAAII+AR S
Sbjct: 182 TVWGNHSSTMFPDLFHAEV----DGRPALELV-DMEWYEKVFIPTVAQRGAAIIQARGAS 236
Query: 243 SALSAASSACDHIRDWVLGTPKGTWVSMGVYSDGSYGIPEGLIYSFPVTCEKGEWSIVKG 302
SA SAA++A +HIRDW LGTP+G WVSM V S G YGIPEG++YSFPVT + G + +V+G
Sbjct: 237 SAASAANAAIEHIRDWALGTPEGDWVSMAVPSQGEYGIPEGIVYSFPVTAKDGAYRVVEG 296
Query: 303 LKVDEFSRAKMDATAEELAEEK 324
L+++EF+R +M+ TA+EL +E
Sbjct: 297 LEINEFARKRMEITAQELLDEM 318
|
| >5mdh_A Malate dehydrogenase; oxidoreductase, (NAD(A)-CHOH(D)); HET: NAD; 2.40A {Sus scrofa} SCOP: c.2.1.5 d.162.1.1 PDB: 4mdh_A* Length = 333 | Back alignment and structure |
|---|
Score = 487 bits (1255), Expect = e-175
Identities = 199/329 (60%), Positives = 246/329 (74%), Gaps = 1/329 (0%)
Query: 5 PLRVLVTGAAGQIGYALVPMIARGIMLGPDQPVILHMLDIEPAAEALNGVKMELIDAAFP 64
P+RVLVTGAAGQI Y+L+ I G + G DQP+IL +LDI P L+GV MEL D A P
Sbjct: 3 PIRVLVTGAAGQIAYSLLYSIGNGSVFGKDQPIILVLLDITPMMGVLDGVLMELQDCALP 62
Query: 65 LLKGVVATTDVVEACKDVNIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEKHAAPN 124
LLK V+AT A KD+++A++VG PR++GMERKD++ NV I+K Q +AL+K+A +
Sbjct: 63 LLKDVIATDKEEIAFKDLDVAILVGSMPRRDGMERKDLLKANVKIFKCQGAALDKYAKKS 122
Query: 125 CKVLVVANPANTNALILKEFAPSIPAKNITCLTRLDHNRAMGQISERLKVHVSDVKNVII 184
KV+VV NPANTN L + APSIP +N +CLTRLDHNRA QI+ +L V DVKNVII
Sbjct: 123 VKVIVVGNPANTNCLTASKSAPSIPKENFSCLTRLDHNRAKAQIALKLGVTSDDVKNVII 182
Query: 185 WGNHSSTQYPDVNHATVTTSKGEKPVREAVADDNWLNTEFITTVQQRGAAIIKARKLSSA 244
WGNHSSTQYPDVNHA V E V EAV DD+WL EFITTVQQRGAA+IKARKLSSA
Sbjct: 183 WGNHSSTQYPDVNHAKVKLQAKEVGVYEAVKDDSWLKGEFITTVQQRGAAVIKARKLSSA 242
Query: 245 LSAASSACDHIRDWVLGTPKGTWVSMGVYSDG-SYGIPEGLIYSFPVTCEKGEWSIVKGL 303
+SAA + CDH+RD GTP+G +VSMG+ SDG SYG+P+ L+YSFPVT + W IV+GL
Sbjct: 243 MSAAKAICDHVRDIWFGTPEGEFVSMGIISDGNSYGVPDDLLYSFPVTIKDKTWKIVEGL 302
Query: 304 KVDEFSRAKMDATAEELAEEKTLAYSCLN 332
+++FSR KMD TA+ELAEEK A+ L+
Sbjct: 303 PINDFSREKMDLTAKELAEEKETAFEFLS 331
|
| >7mdh_A Protein (malate dehydrogenase); chloroplastic malate dehydrogenase (NADP+), activated by LIG chloroplastic malate dehydrogenase; 2.40A {Sorghum bicolor} SCOP: c.2.1.5 d.162.1.1 PDB: 1civ_A* Length = 375 | Back alignment and structure |
|---|
Score = 477 bits (1230), Expect = e-170
Identities = 137/333 (41%), Positives = 188/333 (56%), Gaps = 6/333 (1%)
Query: 1 MAKNPLRVLVTGAAGQIGYALVPMIARGIMLGPDQPVILHMLDIEPAAEALNGVKMELID 60
K + + V+GAAG I L+ +A G + G DQP+ L +L E + +AL GV MEL D
Sbjct: 28 SWKKLVNIAVSGAAGMISNHLLFKLASGEVFGQDQPIALKLLGSERSFQALEGVAMELED 87
Query: 61 AAFPLLKGVVATTDVVEACKDVNIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEKH 120
+ +PLL+ V D E +DV+ A+++G PR GMER ++ N I+ Q AL
Sbjct: 88 SLYPLLREVSIGIDPYEVFEDVDWALLIGAKPRGPGMERAALLDINGQIFADQGKALNAV 147
Query: 121 AAPNCKVLVVANPANTNALILKEFAPSIPAKNITCLTRLDHNRAMGQISERLKVHVSDVK 180
A+ N KVLVV NP NTNALI + AP IPAKN LTRLD NRA Q++ + V V
Sbjct: 148 ASKNVKVLVVGNPCNTNALICLKNAPDIPAKNFHALTRLDENRAKCQLALKAGVFYDKVS 207
Query: 181 NVIIWGNHSSTQYPDVNHATVTTSKGEKPVREAVADDNWLNTEFITTVQQRGAAIIKARK 240
NV IWGNHS+TQ PD +A + +PV+E + WL EF TVQ+RG A+I+
Sbjct: 208 NVTIWGNHSTTQVPDFLNAKI----DGRPVKEVIKRTKWLEEEFTITVQKRGGALIQKWG 263
Query: 241 LSSALSAASSACDHIRDWVLGTPKGTWVSMGVYSDGS-YGIPEGLIYSFPVTCEK-GEWS 298
SSA S A S D I+ V TP+G W S GVY+ G+ YGI E +++S P + G++
Sbjct: 264 RSSAASTAVSIADAIKSLVTPTPEGDWFSTGVYTTGNPYGIAEDIVFSMPCRSKGDGDYE 323
Query: 299 IVKGLKVDEFSRAKMDATAEELAEEKTLAYSCL 331
+ + D+F ++ + EL EK
Sbjct: 324 LATDVSNDDFLWERIKKSEAELLAEKKCVAHLT 356
|
| >3fi9_A Malate dehydrogenase; structural genomics, oxidoreductase, PSI-2, protein structur initiative; 1.90A {Porphyromonas gingivalis} Length = 343 | Back alignment and structure |
|---|
Score = 316 bits (812), Expect = e-107
Identities = 79/324 (24%), Positives = 130/324 (40%), Gaps = 19/324 (5%)
Query: 4 NPLRVLVTGAAGQIGYALVPMIARGIMLGPDQPVILHMLDIEPAAEALNGVKMELIDAAF 63
++ + GAAG IG + A L P+ + L +P A L GV E+ F
Sbjct: 7 TEEKLTIVGAAGMIGSNMAQTAAMM-RLTPN--LCL----YDPFAVGLEGVAEEIRHCGF 59
Query: 64 PLLKGVVATTDVVEACKDVNIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEKHAAP 123
L + T+D+ EA D V GG PRKEGM R+D++ N I ++ +
Sbjct: 60 EGL-NLTFTSDIKEALTDAKYIVSSGGAPRKEGMTREDLLKGNAEIAAQLGKDIKSYCPD 118
Query: 124 NCKVLVVANPANTNALILKEFAPSIPAKNITCLTRLDHNRAMGQISERLKVHVSDVKNVI 183
V+++ NPA+ L+ ++ + +T L LD R ++++ + S V N
Sbjct: 119 CKHVIIIFNPADITGLVTLIYSG-LKPSQVTTLAGLDSTRLQSELAKHFGIKQSLVTNTR 177
Query: 184 IWGNHSSTQYPDVNHATVTTSKGEKPVREAVADDNWLNT---EFITTVQQRGAAIIKARK 240
+G H + A V P+ + + D N E V + GA IIK R
Sbjct: 178 TYGGHGEQMAVFASTAKV----NGTPLTDLIGTDKLTNEQWAELKQRVVKGGANIIKLRG 233
Query: 241 LSSALSAASSACDHIRDWVLGTPKGTWVSMGVYSDGSYGIPEGLIYSFPVTCEKGEWSIV 300
SS S + + + IR + G W + Y + G ++ + G
Sbjct: 234 RSSFQSPSYVSIEMIRAAMGGE-AFRWPAG-CYVNV-PGFEHIMMAMETTITKDGVKHSD 290
Query: 301 KGLKVDEFSRAKMDATAEELAEEK 324
+E RA + + LA+ +
Sbjct: 291 INQLGNEAERAALKESYSHLAKLR 314
|
| >1o6z_A MDH, malate dehydrogenase; halophilic, ION-binding, protein-solvent interaction, oxidoreductase; HET: NAD; 1.95A {Haloarcula marismortui} SCOP: c.2.1.5 d.162.1.1 PDB: 1gt2_A* 2x0r_A* 2j5k_A 2j5q_A 2j5r_A 1d3a_A 1hlp_A* 2hlp_A Length = 303 | Back alignment and structure |
|---|
Score = 88.3 bits (220), Expect = 3e-20
Identities = 65/331 (19%), Positives = 117/331 (35%), Gaps = 50/331 (15%)
Query: 7 RVLVTGAAGQIGYALVPMIA-RGIMLGPDQPVILHMLDIEPAAEALNGVKMELIDAAFPL 65
+V V GAAG +G A IA R I D+ V +DI + G +
Sbjct: 2 KVSVVGAAGTVGAAAGYNIALRDIA---DEVV---FVDIPDKEDDTVGQAADTNHGI-AY 54
Query: 66 LKGVVATTDVVEACKDVNIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEKHAAPNC 125
E ++ V+ G PR+ G R D+ N I + S+L++H +
Sbjct: 55 DSNTRVRQGGYEDTAGSDVVVITAGIPRQPGQTRIDLAGDNAPIMEDIQSSLDEH-NDDY 113
Query: 126 KVLVVANPANTNALILKEFAPSIPAKNITCLTRLDHNRAMGQ------------ISERLK 173
L +NP + L E + +G +SE
Sbjct: 114 ISLTTSNPVDLLNRHLYEA------------GDRSREQVIGFGGRLDSARFRYVLSEEFD 161
Query: 174 VHVSDVKNVIIWGNHSSTQYPDVNHATVTTSKGEKPVREAVADDNWLNTEFITTVQQRGA 233
V +V+ I+ G H Q P + +V + + + + +Q+
Sbjct: 162 APVQNVEGTIL-GEHGDAQVPVFSKVSV----DGTDPEFSGDEKE----QLLGDLQESAM 212
Query: 234 AIIKARKLSSALSAASSACDHIRDWVLGTPKGTW-VSMGVYSDGSYGIPEGLIYSFPVT- 291
+I+ + + + H+ + +L S V +G +G E + PV+
Sbjct: 213 DVIE--RKGATEWGPARGVAHMVEAILHDTGEVLPAS--VKLEGEFGH-EDTAFGVPVSL 267
Query: 292 CEKGEWSIVKGLKVDEFSRAKMDATAEELAE 322
G IV+ +D++ + M AE+L++
Sbjct: 268 GSNGVEEIVE-WDLDDYEQDLMADAAEKLSD 297
|
| >3p7m_A Malate dehydrogenase; putative dehydrogenase, enzyme, structural genomics, center structural genomics of infectious diseases, csgid; 2.20A {Francisella tularensis} Length = 321 | Back alignment and structure |
|---|
Score = 85.7 bits (213), Expect = 3e-19
Identities = 46/262 (17%), Positives = 101/262 (38%), Gaps = 36/262 (13%)
Query: 77 EACKDVNIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEKHAAPNCKVLVVANPANT 136
+ ++ ++ ++ G PRK GM R D++ N+ + + ++ + PN V+ + NP +
Sbjct: 69 KDLENSDVVIVTAGVPRKPGMSRDDLLGINIKVMQTVGEGIKHN-CPNAFVICITNPLDI 127
Query: 137 NALILKEFAPSIPAKNITCLTRLDHNRAMGQ------------ISERLKVHVSDVKNVII 184
+L++F + + N+ +G +++ L V V V+ ++
Sbjct: 128 MVNMLQKF------------SGVPDNKIVGMAGVLDSARFRTFLADELNVSVQQVQAYVM 175
Query: 185 WGNHSSTQYPDVNHATVTTSKGEKPVREAVADDNWLNTEFITTVQQR----GAAIIKARK 240
G H T P + V + + + + L E + + R G I+ K
Sbjct: 176 -GGHGDTMVPLTKMSNV----AGVSLEQ-LVKEGKLKQERLDAIVSRTRSGGGEIVALLK 229
Query: 241 LSSALSAASSACDHIRDWVLGTPKGTWVSMGVYSDGSYGIPEGLIYSFPVTCEKGEWSIV 300
SA A ++A + + L K G YG+ E L P +
Sbjct: 230 TGSAYYAPAAAGIQMAESFLKDKKMILPCAAKVKAGMYGLDEDLFVGVPTEISANGVRPI 289
Query: 301 KGLKVDEFSRAKMDATAEELAE 322
+ +++ + R ++ + + +
Sbjct: 290 E-VEISDKEREQLQVSINAIKD 310
|
| >3tl2_A Malate dehydrogenase; center for structural genomics of infectious diseases, csgid dehydrogenase, oxidoreductase, citric acid cycle; 1.70A {Bacillus anthracis} Length = 315 | Back alignment and structure |
|---|
Score = 85.3 bits (212), Expect = 4e-19
Identities = 62/335 (18%), Positives = 121/335 (36%), Gaps = 42/335 (12%)
Query: 1 MAKNPLRVLVTGAAGQIGYALVPMIARGIMLGPDQPVILHMLDIEPAAEALNGVKMELID 60
M +V V GA G G ++A V++ DI G +++++
Sbjct: 4 MTIKRKKVSVIGA-GFTGATTAFLLA---QKELADVVLV---DIPQLENPTKGKALDMLE 56
Query: 61 AA-FPLLKGVVATTDVVEACKDVNIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEK 119
A+ + T D ++ V+ G RK GM R D+++ N I K+ + K
Sbjct: 57 ASPVQGFDANIIGTSDYADTADSDVVVITAGIARKPGMSRDDLVATNSKIMKSITRDIAK 116
Query: 120 HAAPNCKVLVVANPANTNALILKEFAPSIPAKNITCLTRLDHNRAMGQ------------ 167
H +PN ++V+ NP + + + R +GQ
Sbjct: 117 H-SPNAIIVVLTNPVDAMTYSVFKE------------AGFPKERVIGQSGVLDTARFRTF 163
Query: 168 ISERLKVHVSDVKNVIIWGNHSSTQYPDVNHATVTTSKGEKPVREAVADDNWLNTEFITT 227
I++ L + V D+ ++ G H P V ++ G P+ + + +
Sbjct: 164 IAQELNLSVKDITGFVL-GGHGDDMVPLVRYSYA----GGIPLETLIPKERL--EAIVER 216
Query: 228 VQQRGAAIIKARKLSSALSAASSACDHIRDWVLGTPKGTWVSMGVYSDGSYGIPEGLIYS 287
++ G I+ SA A +++ + + +L + + Y +G YG L
Sbjct: 217 TRKGGGEIVGLLGNGSAYYAPAASLVEMTEAILKDQRRV-LPAIAYLEGEYGY-SDLYLG 274
Query: 288 FPVTCEKGEWSIVKGLKVDEFSRAKMDATAEELAE 322
PV + L++ + +D + E +
Sbjct: 275 VPVILGGNGIEKIIELELLADEKEALDRSVESVRN 309
|
| >1guz_A Malate dehydrogenase; oxidoreductase, tricarboxylic acid cycle, NAD; HET: NAD; 2.0A {Chlorobium vibrioforme} SCOP: c.2.1.5 d.162.1.1 PDB: 1gv1_A 1gv0_A* Length = 310 | Back alignment and structure |
|---|
Score = 84.5 bits (210), Expect = 7e-19
Identities = 55/266 (20%), Positives = 105/266 (39%), Gaps = 35/266 (13%)
Query: 69 VVATTDVVEACKDVNIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEKHAAPNCKVL 128
V + D + +I ++ G PRK GM R+D++ KN I K + KH + N ++
Sbjct: 58 VTGSNDY-ADTANSDIVIITAGLPRKPGMTREDLLMKNAGIVKEVTDNIMKH-SKNPIII 115
Query: 129 VVANPANTNALILKEFAPSIPAKNITCLTRLDHNRAMGQ------------ISERLKVHV 176
VV+NP + + + L R +G I+ L V +
Sbjct: 116 VVSNPLDIMTHVAWVR------------SGLPKERVIGMAGVLDAARFRSFIAMELGVSM 163
Query: 177 SDVKNVIIWGNHSSTQYPDVNHATVTTSKGEKPVREAVADDNWLNTEFITTVQQRGAAII 236
D+ ++ G H P V + TV P+ + + + + + + GA I+
Sbjct: 164 QDINACVL-GGHGDAMVPVVKYTTV----AGIPISDLLPAETI--DKLVERTRNGGAEIV 216
Query: 237 KARKLSSALSAASSACDHIRDWVLGTPKGTWVSMGVYSDGSYGIPEGLIYSFPVTCEKGE 296
+ K SA A +S+ + + ++ K + V +G YGI + PV +
Sbjct: 217 EHLKQGSAFYAPASSVVEMVESIVLDRKRV-LPCAVGLEGQYGI-DKTFVGVPVKLGRNG 274
Query: 297 WSIVKGLKVDEFSRAKMDATAEELAE 322
+ + +D+ + +A+ + E
Sbjct: 275 VEQIYEINLDQADLDLLQKSAKIVDE 300
|
| >1mld_A Malate dehydrogenase; oxidoreductase(NAD(A)-CHOH(D)); HET: CIT; 1.83A {Sus scrofa} SCOP: c.2.1.5 d.162.1.1 PDB: 2dfd_A* Length = 314 | Back alignment and structure |
|---|
Score = 84.6 bits (210), Expect = 7e-19
Identities = 74/336 (22%), Positives = 125/336 (37%), Gaps = 56/336 (16%)
Query: 7 RVLVTGAAGQIGYALVPMIARGIMLGPDQPVI--LHMLDIEPAAEALNGVKMELIDAAFP 64
+V V GA+G IG L ++ P++ L + DI GV +L
Sbjct: 2 KVAVLGASGGIGQPLSLLLKN-------SPLVSRLTLYDIAHT----PGVAADLSHIETR 50
Query: 65 L-LKGVVATTDVVEACKDVNIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEKHAAP 123
+KG + + + K ++ V+ G PRK GM R D+ + N +I +A +H P
Sbjct: 51 ATVKGYLGPEQLPDCLKGCDVVVIPAGVPRKPGMTRDDLFNTNATIVATLTAACAQH-CP 109
Query: 124 NCKVLVVANPANT----NALILKEFAPSIPAKNITCLTRLDHNRAMGQISERLKVHVSDV 179
+ + +++NP N+ A + K+ I +T LD RA ++E + + V
Sbjct: 110 DAMICIISNPVNSTIPITAEVFKKHG-VYNPNKIFGVTTLDIVRANAFVAELKGLDPARV 168
Query: 180 KNVIIWGNHSS-TQYPDVNHATVTTSKGEKPVREAVADDNWLNTEFITTVQQRGAAIIKA 238
+V + G H+ T P ++ T K + P + +Q+ G ++KA
Sbjct: 169 -SVPVIGGHAGKTIIPLISQCTP---KVDFPQDQLST--------LTGRIQEAGTEVVKA 216
Query: 239 RK------LSSALSAASSA---CDHIRDWVLGTPKGTWVSMGVYSDGSYGIPEGLIYSFP 289
+ LS A + A D + K V P Y F
Sbjct: 217 KAGAGSATLSMAYAGARFVFSLVDAMNG------KEGVVECSFVKSQETDCP----Y-FS 265
Query: 290 VTCEKGEWSIVKGLKVDEFS---RAKMDATAEELAE 322
G+ I K L + + S + EL
Sbjct: 266 TPLLLGKKGIEKNLGIGKISPFEEKMIAEAIPELKA 301
|
| >2hjr_A Malate dehydrogenase; malaria, structural genomics, structural genomics consortium, SGC, oxidoreductase; HET: CIT APR; 2.20A {Cryptosporidium parvum} Length = 328 | Back alignment and structure |
|---|
Score = 84.5 bits (210), Expect = 9e-19
Identities = 50/270 (18%), Positives = 98/270 (36%), Gaps = 38/270 (14%)
Query: 69 VVATTDVVEACKDVNIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEKHAAPNCKVL 128
+ + E ++ ++ ++ G PRK M R D+++ N I + A + K+ PN V+
Sbjct: 71 IFGENNY-EYLQNSDVVIITAGVPRKPNMTRSDLLTVNAKIVGSVAENVGKY-CPNAFVI 128
Query: 129 VVANPANTNALILKEFAPSIPAKNITCLTRLDHNRAMGQ------------ISERLKVHV 176
+ NP + KE + + N+ G +S L V
Sbjct: 129 CITNPLDAMVYYFKEK------------SGIPANKVCGMSGVLDSARFRCNLSRALGVKP 176
Query: 177 SDVKNVIIWGNHSSTQYPDVNHATVTTSKGEKPVREAVADDNWLNTEFITTVQQR----G 232
SDV +++ G H P + T+ G + + + + I + ++ G
Sbjct: 177 SDVSAIVV-GGHGDEMIPLTSSVTI----GGILLSD-FVEQGKITHSQINEIIKKTAFGG 230
Query: 233 AAIIKARKLSSALSAASSACDHIRDWVLGTPKGTWVSMGVYSDGSYGIPEGLIYSFPVTC 292
I++ K SA A +++ + L K + Y G Y + L PV
Sbjct: 231 GEIVELLKTGSAFYAPAASAVAMAQAYLKDSKSV-LVCSTYLTGQYNV-NNLFVGVPVVI 288
Query: 293 EKGEWSIVKGLKVDEFSRAKMDATAEELAE 322
K V + + + ++ + E +
Sbjct: 289 GKNGIEDVVIVNLSDDEKSLFSKSVESIQN 318
|
| >3nep_X Malate dehydrogenase; halophIle, molecular adpatation, NAD, oxidoreductase, tricarboxylic acid cycle; 1.55A {Salinibacter ruber} Length = 314 | Back alignment and structure |
|---|
Score = 84.1 bits (209), Expect = 1e-18
Identities = 62/270 (22%), Positives = 103/270 (38%), Gaps = 44/270 (16%)
Query: 69 VVATTDVVEACKDVNIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEKHAAPNCKVL 128
V T D +D ++ ++ G PR GM R D+++KN I + +P+ ++
Sbjct: 58 VTGTNDY-GPTEDSDVCIITAGLPRSPGMSRDDLLAKNTEIVGGVTEQFVEG-SPDSTII 115
Query: 129 VVANPANTNALILKEFAPSIPAKNITCLTRLDHNRAMGQ------------ISERLKVHV 176
VVANP + + E + NR MG I+E L V V
Sbjct: 116 VVANPLDVMTYVAYEA------------SGFPTNRVMGMAGVLDTGRFRSFIAEELDVSV 163
Query: 177 SDVKNVIIWGNHSSTQYPDVNHATVTTSKGEKPVREAVADDNWLNTEFITTVQQRGAAII 236
DV+ +++ G H T P + TV G PV + + D E + + G I+
Sbjct: 164 RDVQALLM-GGHGDTMVPLPRYTTV----GGIPVPQLIDDARI--EEIVERTKGAGGEIV 216
Query: 237 KARKLSS----ALSAASSACDHIRDWVLGTPKGTWVSMGVYSDGSYGIPEGLIYSFPVTC 292
S+ +AA ++D + Y DG YG+ + L PV
Sbjct: 217 DLMGTSAWYAPGAAAAEMTEAILKD------NKRILPCAAYCDGEYGL-DDLFIGVPVKL 269
Query: 293 EKGEWSIVKGLKVDEFSRAKMDATAEELAE 322
G V + +D +A++ +A +
Sbjct: 270 GAGGVEEVIEVDLDADEKAQLKTSAGHVHS 299
|
| >3hhp_A Malate dehydrogenase; MDH, citric acid cycle, TCA cycle, NAD, oxidoreductase, tricarboxylic acid cycle; 1.45A {Escherichia coli k-12} PDB: 2pwz_A 2cmd_A* 1emd_A* 1ib6_A* 1ie3_A* 4e0b_A* Length = 312 | Back alignment and structure |
|---|
Score = 83.4 bits (207), Expect = 2e-18
Identities = 70/328 (21%), Positives = 124/328 (37%), Gaps = 38/328 (11%)
Query: 6 LRVLVTGAAGQIGYALVPMIARGIMLGPDQPVILHMLDIEPAAEALNGVKMELIDAAFPL 65
++V V GAAG IG AL ++ + G + L + DI P GV ++L +
Sbjct: 1 MKVAVLGAAGGIGQALALLLKTQLPSGSE----LSLYDIAPVTP---GVAVDLSHIPTAV 53
Query: 66 LKGVVATTDVVEACKDVNIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEKHAAPNC 125
+ D A + ++ ++ G RK GM+R D+ + N I K + K P
Sbjct: 54 KIKGFSGEDATPALEGADVVLISAGVARKPGMDRSDLFNVNAGIVKNLVQQVAKT-CPKA 112
Query: 126 KVLVVANPANT----NALILKEFAPSIPAKNITCLTRLDHNRAMGQISERLKVHVSDVKN 181
+ ++ NP NT A +LK+ A + +T LD R+ ++E +V+
Sbjct: 113 CIGIITNPVNTTVAIAAEVLKK-AGVYDKNKLFGVTTLDIIRSNTFVAELKGKQPGEVEV 171
Query: 182 VIIWGNHSSTQYPDVNHATVTTSKGEKPVREAVADDNWLNTEFITTVQQRGAAIIKARK- 240
+I G+ T P + + E + +Q G +++A+
Sbjct: 172 PVIGGHSGVTILP------LLSQVPGVSFTEQEVA------DLTKRIQNAGTEVVEAKAG 219
Query: 241 -----LSSALSAASSACDHIRDWVLGTPKGTWVSMGVYSDGSYGIPEGLIYSFPVTCEKG 295
LS +AA +R L +G V DG +S P+ K
Sbjct: 220 GGSATLSMGQAAARFGLSLVRA--LQGEQGVVECAYVEGDG----QYARFFSQPLLLGKN 273
Query: 296 EWSIVKGL-KVDEFSRAKMDATAEELAE 322
K + + F + ++ + L +
Sbjct: 274 GVEERKSIGTLSAFEQNALEGMLDTLKK 301
|
| >2d4a_B Malate dehydrogenase; archaea, hyperthermophIle, oxidoreductase; 2.87A {Aeropyrum pernix} Length = 308 | Back alignment and structure |
|---|
Score = 83.3 bits (207), Expect = 2e-18
Identities = 48/270 (17%), Positives = 94/270 (34%), Gaps = 44/270 (16%)
Query: 69 VVATTDVVEACKDVNIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEKHAAPNCKVL 128
+ + E + +I ++ G RK GM R+ ++ N + A ++ + A + V+
Sbjct: 56 ISGSNSY-EDMRGSDIVLVTAGIGRKPGMTREQLLEANANTMADLAEKIKAY-AKDAIVV 113
Query: 129 VVANPANTNALILKEFAPSIPAKNITCLTRLDHNRAMGQ------------ISERLKVHV 176
+ NP + ++ + T R +G IS++L V
Sbjct: 114 ITTNPVDAMTYVMYKK------------TGFPRERVIGFSGILDSARMAYYISQKLGVSF 161
Query: 177 SDVKNVIIWGNHSSTQYPDVNHATVTTSKGEKPVREAVADDNWLNTEFITTVQQRGAAII 236
V +++ G H +P ++V G P+ ++ + E ++ GA I
Sbjct: 162 KSVNAIVL-GMHGQKMFPVPRLSSV----GGVPLEHLMSKEEI--EEVVSETVNAGAKIT 214
Query: 237 KARKLSS----ALSAASSACDHIRDWVLGTPKGTWVSMGVYSDGSYGIPEGLIYSFPVTC 292
+ R SS A + RD +Y G YG ++ P
Sbjct: 215 ELRGYSSNYGPAAGLVLTVEAIKRD------SKRIYPYSLYLQGEYGY-NDIVAEVPAVI 267
Query: 293 EKGEWSIVKGLKVDEFSRAKMDATAEELAE 322
K + L + E + K D + + +
Sbjct: 268 GKSGIERIIELPLTEDEKRKFDEAVQAVKK 297
|
| >1pzg_A LDH, lactate dehydrogenase; apicomplexa, APAD, tetramer, rossmann fold, oxidoreductase; HET: CME A3D; 1.60A {Toxoplasma gondii} SCOP: c.2.1.5 d.162.1.1 PDB: 1pzf_A* 1pze_A* 1pzh_A* 3om9_A* 1sov_A 1sow_A* 3czm_A* Length = 331 | Back alignment and structure |
|---|
Score = 83.0 bits (206), Expect = 3e-18
Identities = 47/275 (17%), Positives = 98/275 (35%), Gaps = 42/275 (15%)
Query: 69 VVATTDVVEACKDVNIAVMVGGFPRKEGME-----RKDVMSKNVSIYKAQASALEKHAAP 123
V A A + ++ G + G R D++ N I + ++K+ P
Sbjct: 66 VRAEYSYEAALTGADCVIVTAGLTKVPGKPDSEWSRNDLLPFNSKIIREIGQNIKKY-CP 124
Query: 124 NCKVLVVANPANTNALILKEFAPSIPAKNITCLTRLDHNRAMGQ------------ISER 171
++VV NP + ++ E + + N G +++
Sbjct: 125 KTFIIVVTNPLDCMVKVMCEA------------SGVPTNMICGMACMLDSGRFRRYVADA 172
Query: 172 LKVHVSDVKNVIIWGNHSSTQYPDVNHATVTTSKGEKPVREAVADDNWLNTEFITTVQQR 231
L V DV+ +I G H P V + TV P+++ D + + + + +
Sbjct: 173 LSVSPRDVQATVI-GTHGDCMVPLVRYITV----NGYPIQK-FIKDGVVTEKQLEEIAEH 226
Query: 232 ----GAAIIKARKLSSALSAASSACDHIRDWVLGTPKGTWVSMGVYSDGSYGIPEGLIYS 287
G I++ SA A +++ + L K + VY +G YG+ + +
Sbjct: 227 TKVSGGEIVRFLGQGSAYYAPAASAVAMATSFLNDEKRV-IPCSVYCNGEYGL-KDMFIG 284
Query: 288 FPVTCEKGEWSIVKGLKVDEFSRAKMDATAEELAE 322
P V L+++E + + + +++
Sbjct: 285 LPAVIGGAGIERVIELELNEEEKKQFQKSVDDVMA 319
|
| >1ur5_A Malate dehydrogenase; oxidoreductase, tricarboxylic acid cycle; HET: NAD; 1.75A {Chloroflexus aurantiacus} SCOP: c.2.1.5 d.162.1.1 PDB: 1uxg_A* 1guy_A* 1uxk_A* 1uxh_A* 1uxj_A* 1uxi_A* Length = 309 | Back alignment and structure |
|---|
Score = 82.5 bits (205), Expect = 4e-18
Identities = 59/266 (22%), Positives = 106/266 (39%), Gaps = 35/266 (13%)
Query: 69 VVATTDVVEACKDVNIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEKHAAPNCKVL 128
V T + + ++ V+ G PRK GM R+D++ N I +A S +PN ++
Sbjct: 59 VTGTNNY-ADTANSDVIVVTSGAPRKPGMSREDLIKVNADITRACISQAAPL-SPNAVII 116
Query: 129 VVANPANTNALILKEFAPSIPAKNITCLTRLDHNRAMGQ------------ISERLKVHV 176
+V NP + + E + R +GQ I+ V V
Sbjct: 117 MVNNPLDAMTYLAAEV------------SGFPKERVIGQAGVLDAARYRTFIAMEAGVSV 164
Query: 177 SDVKNVIIWGNHSSTQYPDVNHATVTTSKGEKPVREAVADDNWLNTEFITTVQQRGAAII 236
DV+ +++ G H P + + PV E +A D + + ++ G I+
Sbjct: 165 EDVQAMLM-GGHGDEMVPLPRFSCI----SGIPVSEFIAPDRL--AQIVERTRKGGGEIV 217
Query: 237 KARKLSSALSAASSACDHIRDWVLGTPKGTWVSMGVYSDGSYGIPEGLIYSFPVTCEKGE 296
K SA A ++A + + VL K + + Y G YG+ + + PV G
Sbjct: 218 NLLKTGSAYYAPAAATAQMVEAVLKDKKRV-MPVAAYLTGQYGL-NDIYFGVPVILGAGG 275
Query: 297 WSIVKGLKVDEFSRAKMDATAEELAE 322
+ L ++E A ++A+A+ +
Sbjct: 276 VEKILELPLNEEEMALLNASAKAVRA 301
|
| >2ewd_A Lactate dehydrogenase,; protein-substrate_cofactor analog complex, oxidoreductase; HET: A3D; 2.00A {Cryptosporidium parvum} PDB: 2frm_A 2fn7_A* 2fnz_A* 2fm3_A Length = 317 | Back alignment and structure |
|---|
Score = 82.2 bits (204), Expect = 5e-18
Identities = 43/262 (16%), Positives = 89/262 (33%), Gaps = 37/262 (14%)
Query: 77 EACKDVNIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEKHAAPNCKVLVVANPANT 136
++ ++ P + +R +++ N I + A ++K+ PN V+ + NP +
Sbjct: 68 ADISGSDVVIITASIPGRPKDDRSELLFGNARILDSVAEGVKKY-CPNAFVICITNPLDV 126
Query: 137 NALILKEFAPSIPAKNITCLTRLDHNRAMGQ------------ISERLKVHVSDVKNVII 184
++ + L HN+ G I++ V+ SDV +I
Sbjct: 127 MVSHFQKV------------SGLPHNKVCGMAGVLDSSRFRTFIAQHFGVNASDVSANVI 174
Query: 185 WGNHSSTQYPDVNHATVTTSKGEKPVREAVADDNWLNTEFITTVQQR----GAAIIKARK 240
G H P + +V G P+ + + E I + + K
Sbjct: 175 -GGHGDGMVPATSSVSV----GGVPLSSFI-KQGLITQEQIDEIVCHTRIAWKEVADNLK 228
Query: 241 LSSALSAASSACDHIRDWVLGTPKGTWVSMGVYSDGSYGIPEGLIYSFPVTCEKGEWSIV 300
+A A ++A + + L K V + YG+ +G+ P K +
Sbjct: 229 TGTAYFAPAAAAVKMAEAYLKDKKAV-VPCSAFCSNHYGV-KGIYMGVPTIIGKNGVEDI 286
Query: 301 KGLKVDEFSRAKMDATAEELAE 322
L + + + + E+
Sbjct: 287 LELDLTPLEQKLLGESINEVNT 308
|
| >3gvi_A Malate dehydrogenase; NAD, oxidoreductase, tricarboxylic acid cycle, structural genomics; HET: ADP; 2.25A {Brucella melitensis biovar ABORTUS2308} PDB: 3gvh_A* Length = 324 | Back alignment and structure |
|---|
Score = 82.2 bits (204), Expect = 5e-18
Identities = 53/262 (20%), Positives = 107/262 (40%), Gaps = 37/262 (14%)
Query: 77 EACKDVNIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEKHAAPNCKVLVVANPANT 136
A + ++ ++ G PRK GM R D++ N+ + + + ++K+ AP V+ + NP +
Sbjct: 71 AAIEGADVVIVTAGVPRKPGMSRDDLLGINLKVMEQVGAGIKKY-APEAFVICITNPLDA 129
Query: 137 NALILKEFAPSIPAKNITCLTRLDHNRAMGQ------------ISERLKVHVSDVKNVII 184
L++F + L ++ +G +SE V V DV ++
Sbjct: 130 MVWALQKF------------SGLPAHKVVGMAGVLDSARFRYFLSEEFNVSVEDVTVFVL 177
Query: 185 WGNHSSTQYPDVNHATVTTSKGEKPVREAVADDNWLNTEFITTVQQR----GAAIIKARK 240
G H + P ++TV P+ + V W + + + + QR GA I+ K
Sbjct: 178 -GGHGDSMVPLARYSTV----AGIPLPDLV-KMGWTSQDKLDKIIQRTRDGGAEIVGLLK 231
Query: 241 LSSALSAASSACDHIRDWVLGTPKGTWVSMGVYSDGSYGIPEGLIYSFPVTCEKGEWSIV 300
SA A +++ + + L K + + G YG+ + + P +
Sbjct: 232 TGSAFYAPAASAIQMAESYLKDKKRV-LPVAAQLSGQYGV-KDMYVGVPTVIGANGVERI 289
Query: 301 KGLKVDEFSRAKMDATAEELAE 322
+ +D+ +A+ D + +A
Sbjct: 290 IEIDLDKDEKAQFDKSVASVAG 311
|
| >1smk_A Malate dehydrogenase, glyoxysomal; tricarboxylic cycle, glyoxysome, NAD, glyoxylate bypass, oxidoreductase; HET: CIT; 2.50A {Citrullus lanatus} PDB: 1sev_A Length = 326 | Back alignment and structure |
|---|
Score = 81.1 bits (201), Expect = 1e-17
Identities = 73/335 (21%), Positives = 131/335 (39%), Gaps = 44/335 (13%)
Query: 2 AKNPLRVLVTGAAGQIGYALVPMIARGIMLGPDQPVI--LHMLDIEPAAEALNGVKMEL- 58
+V + GAAG IG L ++ P++ LH+ D+ A GV ++
Sbjct: 5 GAPGFKVAILGAAGGIGQPLAMLMKM-------NPLVSVLHLYDVVNA----PGVTADIS 53
Query: 59 -IDAAFPLLKGVVATTDVVEACKDVNIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASAL 117
+D + +G + + A +++ ++ G PRK GM R D+ N I K +
Sbjct: 54 HMDTGAVV-RGFLGQQQLEAALTGMDLIIVPAGVPRKPGMTRDDLFKINAGIVKTLCEGI 112
Query: 118 EKHAAPNCKVLVVANPANTNALILKEF---APSIPAKNITCLTRLDHNRAMGQISERLKV 174
K P V +++NP N+ I E A + K + +T LD RA ++E L +
Sbjct: 113 AKC-CPRAIVNLISNPVNSTVPIAAEVFKKAGTYDPKRLLGVTMLDVVRANTFVAEVLGL 171
Query: 175 HVSDVKNVIIWGNHSSTQYPDVNHATVTTSKGEKPVREAVADDNWLNTEFITTVQQRGAA 234
DV ++ G+ T P ++ +S ++ + +Q G
Sbjct: 172 DPRDVDVPVVGGHAGVTILPLLSQVKPPSSFTQEEISYLTDR-----------IQNGGTE 220
Query: 235 IIKARK------LSSALSAASSACDHIRDWVLGTPKGTWVSMGVYSDGSYGIPEGLIYSF 288
+++A+ LS A +A A +R L G V + E ++
Sbjct: 221 VVEAKAGAGSATLSMAYAAVKFADACLRG--LRGDAG--VIECAFVSSQVT--ELPFFAS 274
Query: 289 PVTCEKGEWSIVKGL-KVDEFSRAKMDATAEELAE 322
V + V L ++E+ R ++ +ELA
Sbjct: 275 KVRLGRNGIEEVYSLGPLNEYERIGLEKAKKELAG 309
|
| >1hye_A L-lactate/malate dehydrogenase; nucleotide binding domain, oxidoreductase; HET: NAP; 1.90A {Methanocaldococcus jannaschii} SCOP: c.2.1.5 d.162.1.1 PDB: 1hyg_A* Length = 313 | Back alignment and structure |
|---|
Score = 81.1 bits (201), Expect = 1e-17
Identities = 61/334 (18%), Positives = 130/334 (38%), Gaps = 46/334 (13%)
Query: 6 LRVLVTGAAGQIGYALVPMIARGIMLGPDQPVILHMLDIEPAAEALNGVKMELIDAA--- 62
++V + GA+G++G A ++A + ++L + E + L G++ ++ DA
Sbjct: 1 MKVTIIGASGRVGSATALLLA---KEPFMKDLVL--IGREHSINKLEGLREDIYDALAGT 55
Query: 63 -FPLLKGVVATTDVVEACKDVNIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEKHA 121
V + + + + ++ ++ G PRKEGM R D+ N I A + +
Sbjct: 56 RSDA-NIYVESDENLRIIDESDVVIITSGVPRKEGMSRMDLAKTNAKIVGKYAKKIAEI- 113
Query: 122 APNCKVLVVANPANTNALILKEFAPSIPAKNITCLTRLDHNRAMGQ------------IS 169
K+ V+ NP + ++ + N+ G I+
Sbjct: 114 CDT-KIFVITNPVDVMTYKALVD------------SKFERNQVFGLGTHLDSLRFKVAIA 160
Query: 170 ERLKVHVSDVKNVIIWGNHSSTQYPDVNHATVTTSKGEKPVREAVADDNWLNTEFITTVQ 229
+ VH+ +V+ II G H + P ++ ++ G P+++ E I V+
Sbjct: 161 KFFGVHIDEVRTRII-GEHGDSMVPLLSATSI----GGIPIQKFERFKELPIDEIIEDVK 215
Query: 230 QRGAAIIKARKLSSALSAASSACDHIRDWVLGTPKGTW-VSMGVYSDGSYGIPEGLIYSF 288
+G II+ + ++A ++ ++ K +S Y DG + +
Sbjct: 216 TKGEQIIR--LKGGSEFGPAAAILNVVRCIVNNEKRLLTLS--AYVDGEFDGIRDVCIGV 271
Query: 289 PVTCEKGEWSIVKGLKVDEFSRAKMDATAEELAE 322
PV + V +++D+ +AE + +
Sbjct: 272 PVKIGRDGIEEVVSIELDKDEIIAFRKSAEIIKK 305
|
| >2zqz_A L-LDH, L-lactate dehydrogenase; oxidoreductase, rossmann fold, cytoplasm, glycolysis, NAD, phosphoprotein; 2.50A {Lactobacillus casei} PDB: 2zqy_A 3vkv_A* 1llc_A* Length = 326 | Back alignment and structure |
|---|
Score = 78.3 bits (194), Expect = 1e-16
Identities = 74/345 (21%), Positives = 132/345 (38%), Gaps = 61/345 (17%)
Query: 1 MAKNPLRVLVTGAAGQIG----YALVPM-IARGIMLGPDQPVILHMLDIEPAAEALNGVK 55
K+ +V++ G G +G YA+V IA+ I + +DI + G
Sbjct: 5 TDKDHQKVILVGD-GAVGSSYAYAMVLQGIAQEIGI----------VDI--FKDKTKGDA 51
Query: 56 MELIDAAFPLLKGVVATTDVVEACKDVNIAVMVGGFPRKEGMERKDVMSKNVSIYKAQAS 115
++L +A P + KD ++ V+ G P+K G R D+++KN+ I K+
Sbjct: 52 IDLSNAL-PFTSPKKIYSAEYSDAKDADLVVITAGAPQKPGETRLDLVNKNLKILKSIVD 110
Query: 116 ALEKHAAPNCKVLVVANPANTNALILKEFAPSIPAKNITCLTRLDHNRAMGQ-------- 167
+ N LV ANP + + L+ NR +G
Sbjct: 111 PIVDS-GFNGIFLVAANPVDILTYATWK------------LSGFPKNRVVGSGTSLDTAR 157
Query: 168 ----ISERLKVHVSDVKNVIIWGNHSSTQYPDVNHATVTTSKGEKPVREAVADDNWLNTE 223
I+E + V V I+ G H T++P +HA + G + E V + +
Sbjct: 158 FRQSIAEMVNVDARSVHAYIM-GEHGDTEFPVWSHANI----GGVTIAEWVKAHPEIKED 212
Query: 224 FITTVQQR----GAAIIKARKLSSALSAASSACDHIRDWVLGTPKGTW-VSMGVYSDGSY 278
+ + + IIK + + ++A I +L +S VY DG Y
Sbjct: 213 KLVKMFEDVRDAAYEIIKLKG--ATFYGIATALARISKAILNDENAVLPLS--VYMDGQY 268
Query: 279 GIPEGLIYSFP-VTCEKGEWSIVKGLKVDEFSRAKMDATAEELAE 322
G+ + P V G +I++ + + + M +A +L +
Sbjct: 269 GL-NDIYIGTPAVINRNGIQNILE-IPLTDHEEESMQKSASQLKK 311
|
| >3pqe_A L-LDH, L-lactate dehydrogenase; FBP, oxidoreductase; 2.20A {Bacillus subtilis} PDB: 3pqf_A* 3pqd_A* Length = 326 | Back alignment and structure |
|---|
Score = 77.2 bits (191), Expect = 3e-16
Identities = 75/346 (21%), Positives = 124/346 (35%), Gaps = 62/346 (17%)
Query: 1 MAKNPLRVLVTGAAGQIG----YALVPM-IARGIMLGPDQPVILHMLDIEPAAEALNGVK 55
M K+ +V + GA G +G +AL+ I +++ +D+ E G
Sbjct: 1 MNKHVNKVALIGA-GFVGSSYAFALINQGITDELVV----------IDV--NKEKAMGDV 47
Query: 56 MELIDA-AFPLLKGVVATTDVVEACKDVNIAVMVGGFPRKEGMERKDVMSKNVSIYKAQA 114
M+L AF + E CKD +I + G +K G R +++ KN+ I+K
Sbjct: 48 MDLNHGKAFAPQPVKTSYGTY-EDCKDADIVCICAGANQKPGETRLELVEKNLKIFKGIV 106
Query: 115 SALEKHAAPNCKVLVVANPANTNALILKEFAPSIPAKNITCLTRLDHNRAMGQ------- 167
S + + LV NP + + + L R +G
Sbjct: 107 SEVMAS-GFDGIFLVATNPVDILTYATWK------------FSGLPKERVIGSGTTLDSA 153
Query: 168 -----ISERLKVHVSDVKNVIIWGNHSSTQYPDVNHATVTTSKGEKPVREAVADDNWLNT 222
+SE +V II G H T+ P +HA V G PV E V ++
Sbjct: 154 RFRFMLSEYFGAAPQNVCAHII-GEHGDTELPVWSHANV----GGVPVSELVEKNDAYKQ 208
Query: 223 EFITTVQQR----GAAIIKARKLSSALSAASSACDHIRDWVLGTPKGTW-VSMGVYSDGS 277
E + + II+ + + + + I +L VS Y DG
Sbjct: 209 EELDQIVDDVKNAAYHIIEKKG--ATYYGVAMSLARITKAILHNENSILTVS--TYLDGQ 264
Query: 278 YGIPEGLIYSFP-VTCEKGEWSIVKGLKVDEFSRAKMDATAEELAE 322
YG + + P V G I + L ++E + + +A L
Sbjct: 265 YGA-DDVYIGVPAVVNRGGIAGITE-LNLNEKEKEQFLHSAGVLKN 308
|
| >4aj2_A L-lactate dehydrogenase A chain; oxidoreductase-inhibitor complex, fragment-based LEAD genera inhibitors; HET: 52C; 1.75A {Rattus norvegicus} PDB: 4aj1_A* 4aje_A* 4ajh_A* 4aji_A* 4ajj_A* 4ajk_A* 4ajl_A* 4ajn_A* 4ajo_A* 4al4_A* 4aj4_A* 4ajp_A* 1i10_A* 3h3f_A* 9ldt_A* 9ldb_A* 1t2f_A* 1i0z_A* 5ldh_A* 1ldm_A* ... Length = 331 | Back alignment and structure |
|---|
Score = 76.8 bits (190), Expect = 4e-16
Identities = 52/276 (18%), Positives = 103/276 (37%), Gaps = 49/276 (17%)
Query: 69 VVATTDVVEACKDVNIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEKHAAPNCKVL 128
+V++ D + + ++ G ++EG R +++ +NV+I+K + K+ +P CK+L
Sbjct: 76 IVSSKDY-SVTANSKLVIITAGARQQEGESRLNLVQRNVNIFKFIIPNVVKY-SPQCKLL 133
Query: 129 VVANPANTNA-LILKEFAPSIPAKNITCLTRLDHNRAMGQ------------ISERLKVH 175
+V+NP + + K ++ NR +G + ERL VH
Sbjct: 134 IVSNPVDILTYVAWK-------------ISGFPKNRVIGSGCNLDSARFRYLMGERLGVH 180
Query: 176 VSDVKNVIIWGNHSSTQYPDVNHATVTTSKGEKPVREAVADDNWLNT-----EFITTVQQ 230
++ G H + P + V ++ + V
Sbjct: 181 PLSCHGWVL-GEHGDSSVPVWSGVNV----AGVSLKSLNPQLGTDADKEQWKDVHKQVVD 235
Query: 231 RGAAIIKARKLSS---ALSAASSACDHIRDWVLGTPKGTWVSMGVYSDGSYGIPEGLIYS 287
+IK + +S LS A A +++ + G YGI E + S
Sbjct: 236 SAYEVIKLKGYTSWAIGLSVADLAESIMKN------LRRVHPISTMIKGLYGIKEDVFLS 289
Query: 288 FP-VTCEKGEWSIVKGLKVDEFSRAKMDATAEELAE 322
P + + G +VK + + A++ +A+ L
Sbjct: 290 VPCILGQNGISDVVK-VTLTPDEEARLKKSADTLWG 324
|
| >1t2d_A LDH-P, L-lactate dehydrogenase; ternary complex, oxidoreductase; HET: NAD; 1.10A {Plasmodium falciparum} SCOP: c.2.1.5 d.162.1.1 PDB: 1t25_A* 1t26_A* 1t2c_A* 1t24_A* 2x8l_A 2ydn_A* 2a94_A* 1u4s_A* 1u5a_A* 1u5c_A* 1u4o_A* 1t2e_A* 1xiv_A* 1ceq_A 1ldg_A* 1cet_A* 1oc4_A* 2a92_A* 2aa3_A* Length = 322 | Back alignment and structure |
|---|
Score = 76.0 bits (188), Expect = 7e-16
Identities = 53/276 (19%), Positives = 100/276 (36%), Gaps = 42/276 (15%)
Query: 77 EACKDVNIAVMVGGFPRKEGM-----ERKDVMSKNVSIYKAQASALEKHAAPNCKVLVVA 131
+ ++ ++ GF + G R D++ N I ++K+ PN ++VV
Sbjct: 68 DDLAGADVVIVTAGFTKAPGKSDKEWNRDDLLPLNNKIMIEIGGHIKKN-CPNAFIIVVT 126
Query: 132 NPANTNALILKEFAPSIPAKNITCLTRLDHNRAMGQ------------ISERLKVHVSDV 179
NP + +L + + + N+ +G IS++L V DV
Sbjct: 127 NPVDVMVQLLHQH------------SGVPKNKIIGLGGVLDTSRLKYYISQKLNVCPRDV 174
Query: 180 KNVIIWGNHSSTQYPDVNHATVTTSKGEKPVREAVADDNWLNTEFITTVQQR---GAAII 236
I+ G H + + TV G P++E ++ ++ + + R A I
Sbjct: 175 NAHIV-GAHGNKMVLLKRYITV----GGIPLQE-FINNKLISDAELEAIFDRTVNTALEI 228
Query: 237 KARKLSSALSAASSACDHIRDWVLGTPKGTWVSMGVYSDGSYGIPEGLIYSFPVTCEKGE 296
+S A ++A + + L K + +G YG + PV
Sbjct: 229 VNLH-ASPYVAPAAAIIEMAESYLKDLKKV-LICSTLLEGQYGH-SDIFGGTPVVLGANG 285
Query: 297 WSIVKGLKVDEFSRAKMDATAEELAEEKTLAYSCLN 332
V L+++ +AK D E K LA+ +
Sbjct: 286 VEQVIELQLNSEEKAKFDEAIAETKRMKALAHHHHH 321
|
| >3ldh_A Lactate dehydrogenase; oxidoreductase, CHOH donor, NAD acceptor; HET: NAD; 3.00A {Squalus acanthias} SCOP: i.12.1.1 Length = 330 | Back alignment and structure |
|---|
Score = 75.8 bits (187), Expect = 8e-16
Identities = 46/274 (16%), Positives = 95/274 (34%), Gaps = 48/274 (17%)
Query: 69 VVATTDVVEACKDVNIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEKHAAPNCKVL 128
+V+ D + V+ G ++EG R +++ +NV+I+K + KH +P+C
Sbjct: 78 IVSGKDY-SVSAGSKLVVITAGARQQEGESRLNLVQRNVNIFKFIIPNIVKH-SPDCLKE 135
Query: 129 VVANPANTNALILKEFAPSIPAKNITCLTRLDHNRAMGQ------------ISERLKVHV 176
+ + L+ L +R +G + ERL VH
Sbjct: 136 LHPELGTDKNKQDWK------------LSGLPMHRIIGSGCNLDSARFRYLMGERLGVHS 183
Query: 177 SDVKNVIIWGNHSSTQYPDVNHATVTTSKGEKPVREAVADDNWLNTEFITTVQQR----- 231
V +I G H + + +K K V ++ + + ++
Sbjct: 184 CLVIGWVI-GQHGDSVPSVWSGMWD--AKLHKDVVDSAYE--------VIKLKGYTSWAI 232
Query: 232 GAAIIKARKLSSALSAASSACDHIRDWVLGTPKGTW-VSMGVYSDGSYGIPEGLIYSFPV 290
G + + + ++ + + ++ VS YGI + + S P
Sbjct: 233 GLVVSNPVDVLTYVAWKGCSVADLAQTIMKDLCRVHPVS--TMVKDFYGIKDNVFLSLPC 290
Query: 291 TCEKG--EWSIVKGLKVDEFSRAKMDATAEELAE 322
G +IVK +K+ ++ +A L +
Sbjct: 291 VLNNGISHCNIVK-MKLKPDEEQQLQKSATTLWD 323
|
| >1a5z_A L-lactate dehydrogenase; oxidoreductase, glycolysis, hyperthermophiles, thermotoga MA protein stability; HET: FBP NAD; 2.10A {Thermotoga maritima} SCOP: c.2.1.5 d.162.1.1 Length = 319 | Back alignment and structure |
|---|
Score = 74.5 bits (184), Expect = 2e-15
Identities = 52/300 (17%), Positives = 108/300 (36%), Gaps = 45/300 (15%)
Query: 41 MLDIEPAAEALNGVKMELIDAAFPLLKGVVATTDVVEACKDVNIAVMVGGFPRKEGMERK 100
++D+ + G ++LI P + K ++ ++ G P+K G R
Sbjct: 30 LIDV--DKKRAEGDALDLIHGT-PFTRRANIYAGDYADLKGSDVVIVAAGVPQKPGETRL 86
Query: 101 DVMSKNVSIYKAQASALEKHAAPNCKVLVVANPANTNALILKEFAPSIPAKNITCLTRLD 160
++ +N + K A + K+ AP+ V+VV NP + + + +D
Sbjct: 87 QLLGRNARVMKEIARNVSKY-APDSIVIVVTNPVDVLTYFFLKE------------SGMD 133
Query: 161 HNRAMGQ------------ISERLKVHVSDVKNVIIWGNHSSTQYPDVNHATVTTSKGEK 208
+ G I++ V +I G H ++ P + A + G
Sbjct: 134 PRKVFGSGTVLDTARLRTLIAQHCGFSPRSVHVYVI-GEHGDSEVPVWSGAMI----GGI 188
Query: 209 PVREAVADDNWLNTEFITTVQQR----GAAIIKARKLSSALSAASSACDHIRDWVLGTPK 264
P++ +++ + ++ II+ + + A + A I + + K
Sbjct: 189 PLQNMCQVCQKCDSKILENFAEKTKRAAYEIIE--RKGATHYAIALAVADIVESIFFDEK 246
Query: 265 GTW-VSMGVYSDGSYGIPEGLIYSFP-VTCEKGEWSIVKGLKVDEFSRAKMDATAEELAE 322
+S VY + G+ + L S P + G I++ L ++E +A L
Sbjct: 247 RVLTLS--VYLEDYLGV-KDLCISVPVTLGKHGVERILE-LNLNEEELEAFRKSASILKN 302
|
| >1oju_A MDH, malate dehydrogenase; hyperthermophilic, oxidoreductase; HET: ENA; 2.79A {Archaeoglobus fulgidus} SCOP: c.2.1.5 d.162.1.1 PDB: 1ojs_A* 2x0i_A* 2x0j_A* Length = 294 | Back alignment and structure |
|---|
Score = 74.1 bits (183), Expect = 3e-15
Identities = 55/267 (20%), Positives = 92/267 (34%), Gaps = 50/267 (18%)
Query: 69 VVATTDVVEACKDVNIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEKHAAPNCKVL 128
+V D K I V+ G RK GM R D+ KN I K A + ++ AP K+L
Sbjct: 58 IVGGADY-SLLKGSEIIVVTAGLARKPGMTRLDLAHKNAGIIKDIAKKIVEN-APESKIL 115
Query: 129 VVANPANTNALILKEFAPSIPAKNITCLTRLDHNRAMGQ------------ISERLKVHV 176
VV NP + I+ + + N G +
Sbjct: 116 VVTNPMDVMTYIMWKE------------SGKPRNEVFGMGNQLDSQRLKERLYNAGAR-- 161
Query: 177 SDVKNVIIWGNHSSTQYPDVNHATVTTSKGEKPVREAVADDNWLNTEFITTVQQRGAAII 236
+++ I G H + + + A + EAV +D V+ A +I
Sbjct: 162 -NIRRAWIIGEHGDSMFVAKSLADF----DGEVDWEAVEND----------VRFVAAEVI 206
Query: 237 KARKLSSALSAASSACDHIRDWVLGTPKGTW-VSMGVYSDGSYGIPEGLIYSFPVTCEKG 295
K + + + + A + V+ S + G YGI E + P K
Sbjct: 207 K--RKGATIFGPAVAIYRMVKAVVEDTGEIIPTS--MILQGEYGI-ENVAVGVPAKLGKN 261
Query: 296 EWSIVKGLKVDEFSRAKMDATAEELAE 322
+ +K+ + K+ +A+ L E
Sbjct: 262 GAEVAD-IKLSDEEIEKLRNSAKILRE 287
|
| >1lld_A L-lactate dehydrogenase; oxidoreductase(CHOH (D)-NAD (A)); HET: NAD; 2.00A {Bifidobacterium longum subsp} SCOP: c.2.1.5 d.162.1.1 PDB: 1lth_T* Length = 319 | Back alignment and structure |
|---|
Score = 72.9 bits (180), Expect = 7e-15
Identities = 54/276 (19%), Positives = 102/276 (36%), Gaps = 49/276 (17%)
Query: 69 VVATTDVVEACKDVNIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEKHAAPNCKVL 128
+ + D E C+D ++ V+ G +K G R +++ V+I KA L K APN +
Sbjct: 64 IDGSDDP-EICRDADMVVITAGPRQKPGQSRLELVGATVNILKAIMPNLVKV-APNAIYM 121
Query: 129 VVANPANTNALILKEFAPSIPAKNITCLTRLDHNRAMGQ------------ISERLKVHV 176
++ NP + + ++ LT L N+ G I+++ V+V
Sbjct: 122 LITNPVDIATHVAQK------------LTGLPENQIFGSGTNLDSARLRFLIAQQTGVNV 169
Query: 177 SDVKNVIIWGNHSSTQYPDVNHATVTTSKGEKPVREAVADDN--WLNTEFITTVQQR--- 231
+V I G H ++ P AT+ G P+ + L+ + + Q
Sbjct: 170 KNVHAYIA-GEHGDSEVPLWESATI----GGVPMSDWTPLPGHDPLDADKREEIHQEVKN 224
Query: 232 -GAAIIKARKLSS---ALSAASSACDHIRDWVLGTPKGTWVSMGVYSDGSYGIPEGLIYS 287
II + ++ +S + D + + +GI + S
Sbjct: 225 AAYKIINGKGATNYAIGMSGVDIIEAVLHD------TNRILPVSSMLKDFHGI-SDICMS 277
Query: 288 FP-VTCEKGEWSIVKGLKVDEFSRAKMDATAEELAE 322
P + +G + + V + A + +AE L E
Sbjct: 278 VPTLLNRQGVNNTIN-TPVSDKELAALKRSAETLKE 312
|
| >1y6j_A L-lactate dehydrogenase; southeast collaboratory for structural genomics, secsg, protein struc initiative, PSI, oxidoreductase; 3.01A {Clostridium thermocellum} SCOP: c.2.1.5 d.162.1.1 Length = 318 | Back alignment and structure |
|---|
Score = 72.9 bits (180), Expect = 8e-15
Identities = 71/346 (20%), Positives = 131/346 (37%), Gaps = 62/346 (17%)
Query: 1 MAKNPLRVLVTGAAGQIG----YALVPM-IARGIMLGPDQPVILHMLDIEPAAEALNGVK 55
M K+ +V + GA G +G + + A ++L +D+ E G
Sbjct: 3 MVKSRSKVAIIGA-GFVGASAAFTMALRQTANELVL----------IDV--FKEKAIGEA 49
Query: 56 MELIDAAFPLLKGVVATTDVVEACKDVNIAVMVGGFPRKEGMERKDVMSKNVSIYKAQAS 115
M++ P + + KD ++ V+ G RK G R D+ KNV I K
Sbjct: 50 MDINHGL-PFMGQMSLYAGDYSDVKDCDVIVVTAGANRKPGETRLDLAKKNVMIAKEVTQ 108
Query: 116 ALEKHAAPNCKVLVVANPANTNALILKEFAPSIPAKNITCLTRLDHNRAMGQ-------- 167
+ K+ + +LVV+NP + ++++ + L + +G
Sbjct: 109 NIMKY-YNHGVILVVSNPVDIITYMIQK------------WSGLPVGKVIGSGTVLDSIR 155
Query: 168 ----ISERLKVHVSDVKNVIIWGNHSSTQYPDVNHATVTTSKGEKPVREAVADDNWLNT- 222
+SE+L V V +V II G H +Q P + + K + E + D T
Sbjct: 156 FRYLLSEKLGVDVKNVHGYII-GEHGDSQLPLWSCTHI----AGKNINEYIDDPKCNFTE 210
Query: 223 ----EFITTVQQRGAAIIKARKLSSALSAASSACDHIRDWVLGTPKGTW-VSMGVYSDGS 277
+ V+ GA IIK + + + + I + +L V +G
Sbjct: 211 EDKKKIAEDVKTAGATIIK--NKGATYYGIAVSINTIVETLLKNQNTIRTVG--TVINGM 266
Query: 278 YGIPEGLIYSFP-VTCEKGEWSIVKGLKVDEFSRAKMDATAEELAE 322
YGI E + S P + +G +++ + + +AE++ +
Sbjct: 267 YGI-EDVAISLPSIVNSEGVQEVLQ-FNLTPEEEEALRFSAEQVKK 310
|
| >1ldn_A L-lactate dehydrogenase; oxidoreductase(CHOH(D)-NAD(A)); HET: FBP NAD; 2.50A {Geobacillus stearothermophilus} SCOP: c.2.1.5 d.162.1.1 PDB: 1ldb_A 2ldb_A* Length = 316 | Back alignment and structure |
|---|
Score = 72.5 bits (179), Expect = 1e-14
Identities = 67/344 (19%), Positives = 120/344 (34%), Gaps = 58/344 (16%)
Query: 1 MAKNPLRVLVTGAAGQIG----YALVPM-IARGIMLGPDQPVILHMLDIEPAAEALNGVK 55
RV+V GA G +G +AL+ IA I+L +D G
Sbjct: 2 KNNGGARVVVIGA-GFVGASYVFALMNQGIADEIVL----------IDA--NESKAIGDA 48
Query: 56 MELIDAAFPLLKGVVATTDVVEACKDVNIAVMVGGFPRKEGMERKDVMSKNVSIYKAQAS 115
M+ K V + C+D ++ V+ G +K G R D++ KN++I+++
Sbjct: 49 MDFNHGKVFAPKPVDIWHGDYDDCRDADLVVICAGANQKPGETRLDLVDKNIAIFRSIVE 108
Query: 116 ALEKHAAPNCKVLVVANPANTNALILKEFAPSIPAKNITCLTRLDHNRAMGQ-------- 167
++ LV NP + + + L H R +G
Sbjct: 109 SVMAS-GFQGLFLVATNPVDILTYATWK------------FSGLPHERVIGSGTILDTAR 155
Query: 168 ----ISERLKVHVSDVKNVIIWGNHSSTQYPDVNHATVTTSKGEKPVREAVADDNWLNTE 223
+ E V +V II G H T+ P + A + G P+R+ V +
Sbjct: 156 FRFLLGEYFSVAPQNVHAYII-GEHGDTELPVWSQAYI----GVMPIRKLVESKGEEAQK 210
Query: 224 FITTVQQR---GAAIIKARKLSSALSAASSACDHIRDWVLGTPKGTW-VSMGVYSDGSYG 279
+ + A I +K + + + +L VS Y DG YG
Sbjct: 211 DLERIFVNVRDAAYQIIEKK-GATYYGIAMGLARVTRAILHNENAILTVS--AYLDGLYG 267
Query: 280 IPEGLIYSFP-VTCEKGEWSIVKGLKVDEFSRAKMDATAEELAE 322
+ P V G +++ +++++ + + +A L
Sbjct: 268 E-RDVYIGVPAVINRNGIREVIE-IELNDDEKNRFHHSAATLKS 309
|
| >2i6t_A Ubiquitin-conjugating enzyme E2-like isoform A; L-lactate dehydrogenase, oxidoreductase, ubiquitin-protein L unknown function; 2.10A {Homo sapiens} PDB: 3dl2_A Length = 303 | Back alignment and structure |
|---|
Score = 71.5 bits (176), Expect = 2e-14
Identities = 48/289 (16%), Positives = 90/289 (31%), Gaps = 43/289 (14%)
Query: 41 MLDIEPAAEALNGVKMELIDAAFPLLKGVVATTDVVEACKDVNIAVMVGGFPRKEGMERK 100
+LD+ + +D L V + D+ A + +
Sbjct: 44 LLDLSEGTKG------ATMDLEIFNLPNVEISKDL-SASAHSKVVIFTVN-SLGSSQSYL 95
Query: 101 DVMSKNVSIYKAQASALEKHAAPNCKVLVVANPANTNALILKEFAPSIPAKNITCLTRLD 160
DV+ NV +++A AL + + + +LV + P + + + + I LD
Sbjct: 96 DVVQSNVDMFRALVPALGHY-SQHSVLLVASQPVEIMTYVTWKLSTFPANRVIGIGCNLD 154
Query: 161 HNRAMGQISERLKVHVSDVKNVIIWGNHSSTQYPDVNHATVTTSKGEKPVREAVADDNWL 220
R I+ LK S + +I G + + S
Sbjct: 155 SQRLQYIITNVLKAQTSGKEVWVI-GEQGEDKVLTWSGQEEVVSH--------------- 198
Query: 221 NTEFITTVQQRGAAIIKARKLSS---ALSAASSACDHIRDW--VLGTPKGTWVSMGVYSD 275
+ R +++ + S LS A + + V VS +
Sbjct: 199 --TSQVQLSNRAMELLRVKGQRSWSVGLSVADMVDSIVNNKKKVH--S----VS--ALAK 248
Query: 276 GSYGIPEGLIYSFP-VTCEKGEWSIVK-GLKVDEFSRAKMDATAEELAE 322
G Y I + S P + G ++K LK D K+ ++A +
Sbjct: 249 GYYDINSEVFLSLPCILGTNGVSEVIKTTLKEDT-VTEKLQSSASSIHS 296
|
| >1ez4_A Lactate dehydrogenase; rossmann fold, oxidoreductase; HET: NAD; 2.30A {Lactobacillus pentosus} SCOP: c.2.1.5 d.162.1.1 Length = 318 | Back alignment and structure |
|---|
Score = 71.0 bits (175), Expect = 4e-14
Identities = 64/345 (18%), Positives = 128/345 (37%), Gaps = 66/345 (19%)
Query: 3 KNPLRVLVTGAAGQIG----YALVPM-IARGIMLGPDQPVILHMLDIEPAAEALNGVKME 57
N +V++ G G +G +A+ IA ++ +D+ + G ++
Sbjct: 3 PNHQKVVLVGD-GAVGSSYAFAMAQQGIAEEFVI----------VDV--VKDRTKGDALD 49
Query: 58 LIDAAFPLLKGVVATTDVVEACKDVNIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASAL 117
L DA + CKD ++ V+ G P+K G R D+++KN++I + +
Sbjct: 50 LEDAQ-AFTAPKKIYSGEYSDCKDADLVVITAGAPQKPGESRLDLVNKNLNILSSIVKPV 108
Query: 118 EKHAAPNCKVLVVANPANTNALILKEFAPSIPAKNITCLTRLDHNRAMGQ---------- 167
+ LV ANP + + + R +G
Sbjct: 109 VDS-GFDGIFLVAANPVDILTYATWK------------FSGFPKERVIGSGTSLDSSRLR 155
Query: 168 --ISERLKVHVSDVKNVIIWGNHSSTQYPDVNHATVTTSKGEKPVREAVADDNWLNTEFI 225
+ ++ V V I+ G H +++ + AT+ G +PVR+ VA + ++ + +
Sbjct: 156 VALGKQFNVDPRSVDAYIM-GEHGDSEFAAYSTATI----GTRPVRD-VAKEQGVSDDDL 209
Query: 226 TTVQQR---GAAIIKARKLSS----ALSAASSACDHIRDWVLGTPKGTWVSMGVYSDGSY 278
++ A I K ++ + + +RD + + +G Y DG Y
Sbjct: 210 AKLEDGVRNKAYDIINLKGATFYGIGTALMRISKAILRD------ENAVLPVGAYMDGQY 263
Query: 279 GIPEGLIYSFP-VTCEKGEWSIVKGLKVDEFSRAKMDATAEELAE 322
G+ + P + G I++ + KM +A L +
Sbjct: 264 GL-NDIYIGTPAIIGGTGLKQIIE-SPLSADELKKMQDSAATLKK 306
|
| >3d0o_A L-LDH 1, L-lactate dehydrogenase 1; cytoplasm, glycolysis, NAD, oxidoreductase, phosphoprotein; 1.80A {Staphylococcus aureus} PDB: 3d4p_A* 3h3j_A* Length = 317 | Back alignment and structure |
|---|
Score = 71.0 bits (175), Expect = 4e-14
Identities = 51/264 (19%), Positives = 97/264 (36%), Gaps = 43/264 (16%)
Query: 77 EACKDVNIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEKHAAPNCKVLVVANPANT 136
C D ++ V+ G +K G R D++SKN+ I+K+ + + LV NP +
Sbjct: 70 SDCHDADLVVICAGAAQKPGETRLDLVSKNLKIFKSIVGEVMAS-KFDGIFLVATNPVDI 128
Query: 137 NALILKEFAPSIPAKNITCLTRLDHNRAMGQ------------ISERLKVHVSDVKNVII 184
A + + L R +G +SE V V II
Sbjct: 129 LAYATWK------------FSGLPKERVIGSGTILDSARFRLLLSEAFDVAPRSVDAQII 176
Query: 185 WGNHSSTQYPDVNHATVTTSKGEKPVREAVADDNWLNTEFITTVQQR----GAAIIKARK 240
G H T+ P +HA + +P++ + + I + + II+A+
Sbjct: 177 -GEHGDTELPVWSHANI----AGQPLKT-LLEQRPEGKAQIEQIFVQTRDAAYDIIQAKG 230
Query: 241 LSSALSAASSACDHIRDWVLGTPKGTW-VSMGVYSDGSYGIPEGLIYSFP-VTCEKGEWS 298
+ + I + + VS +G Y E + P V G +
Sbjct: 231 --ATYYGVAMGLARITEAIFRNEDAVLTVS--ALLEGEYEE-EDVYIGVPAVINRNGIRN 285
Query: 299 IVKGLKVDEFSRAKMDATAEELAE 322
+V+ + +++ ++K +A+ L +
Sbjct: 286 VVE-IPLNDEEQSKFAHSAKTLKD 308
|
| >2xxj_A L-LDH, L-lactate dehydrogenase; oxidoreductase, hyperthermophIle; HET: NAD; 1.964A {Thermus thermophilus} PDB: 2xxb_A* 3zzn_A* 2v7p_A* 2e37_A* 2v6m_A* 2xxe_A 4a73_A Length = 310 | Back alignment and structure |
|---|
Score = 70.6 bits (174), Expect = 4e-14
Identities = 49/301 (16%), Positives = 99/301 (32%), Gaps = 46/301 (15%)
Query: 41 MLDIEPAAEALNGVKMELIDAAFPLLKGVVATTDVVEACKDVNIAVMVGGFPRKEGMERK 100
++D+ + +++ A P V + V+ G ++ G R
Sbjct: 30 LVDL--DRKLAQAHAEDILHAT-PFAHPVWVWAGSYGDLEGARAVVLAAGVAQRPGETRL 86
Query: 101 DVMSKNVSIYKAQASALEKHAAPNCKVLVVANPANTNALILKEFAPSIPAKNITCLTRLD 160
++ +N ++ + + AP +LV NP + + L+ L
Sbjct: 87 QLLDRNAQVFAQVVPRVLEA-APEAVLLVATNPVDVMTQVAYA------------LSGLP 133
Query: 161 HNRAMGQ------------ISERLKVHVSDVKNVIIWGNHSSTQYPDVNHATVTTSKGEK 208
R +G ++E L+V V ++ G H ++ + A V G
Sbjct: 134 PGRVVGSGTILDTARFRALLAEYLRVAPQSVHAYVL-GEHGDSEVLVWSSAQV----GGV 188
Query: 209 PVREAVADDNWLNT-----EFITTVQQRGAAIIKARKLSSALSAASSACDHIRDWVLGTP 263
P+ E + V++ II+ + + + + +L
Sbjct: 189 PLLEFAEARGRALSPEDRARIDEGVRRAAYRIIEGKG--ATYYGIGAGLARLVRAILTDE 246
Query: 264 KGTW-VSMGVYSDGSYGIPEGLIYSFP-VTCEKGEWSIVKGLKVDEFSRAKMDATAEELA 321
KG + VS ++ G+ + S P + G V + RA + +AE L
Sbjct: 247 KGVYTVS--AFTPEVAGV-LEVSLSLPRILGAGGVAGTVY-PSLSPEERAALRRSAEILK 302
Query: 322 E 322
E
Sbjct: 303 E 303
|
| >2v6b_A L-LDH, L-lactate dehydrogenase; oxidoreductase, radioresistance, NAD, cytoplasm, mesophilic, glycolysis; 2.50A {Deinococcus radiodurans} Length = 304 | Back alignment and structure |
|---|
Score = 70.2 bits (173), Expect = 7e-14
Identities = 42/205 (20%), Positives = 78/205 (38%), Gaps = 22/205 (10%)
Query: 41 MLDIEPA---AEALNGVKMELIDAAFPLLKGVVATTDVVEACKDVNIAVMVGGFPRKEGM 97
++D + AEA ++ AA P+ G D + ++ G +K G
Sbjct: 30 LVDRDEDRAQAEA-----EDIAHAA-PVSHGTRVWHGGHSELADAQVVILTAGANQKPGE 83
Query: 98 ERKDVMSKNVSIYKAQASALEKHAAPNCKVLVVANPANTNALILKEFAPSIPAKNITCLT 157
R D++ KN I++ + + AP+ +LV +NP + + + AP I T
Sbjct: 84 SRLDLLEKNADIFRELVPQITRA-APDAVLLVTSNPVDLLTDLATQLAP--GQPVIGSGT 140
Query: 158 RLDHNRAMGQISERLKVHVSDVKNVIIWGNHSSTQYPDVNHATVTTSKGEKPVREAVADD 217
LD R +++ V + ++ G H ++ + A V PV + +
Sbjct: 141 VLDSARFRHLMAQHAGVDGTHAHGYVL-GEHGDSEVLAWSSAMV----AGMPVADFMQAQ 195
Query: 218 NWLNTEF-----ITTVQQRGAAIIK 237
N E + A+II+
Sbjct: 196 NLPWNEQVRAKIDEGTRNAAASIIE 220
|
| >1hyh_A L-hicdh, L-2-hydroxyisocaproate dehydrogenase; L-2-hydroxycarboxylate dehydrogenase, L-lactate dehydrogenas oxidoreductase (CHOH(D)-NAD+(A)); HET: NAD; 2.20A {Weissella confusa} SCOP: c.2.1.5 d.162.1.1 Length = 309 | Back alignment and structure |
|---|
Score = 59.4 bits (145), Expect = 2e-10
Identities = 25/216 (11%), Positives = 68/216 (31%), Gaps = 42/216 (19%)
Query: 41 MLDIEPA---AEALNGVKMELIDAAFPLLKGVVATTDVVEACKDVNIAVMVGGFPR---- 93
+D A A+ ++ DA L + A D ++ + G +
Sbjct: 31 FIDANEAKVKADQ-----IDFQDAMANLEAHGNIVINDWAALADADVVISTLGNIKLQQD 85
Query: 94 KEGMERKDVMSKNVSIYKAQASALEKHAAPNCKVLVVANPANTNALILKEFAPSIPAKNI 153
+R + S+ ++ + L++ + ++V++NP + + +
Sbjct: 86 NPTGDRFAELKFTSSMVQSVGTNLKESG-FHGVLVVISNPVDVITALFQH---------- 134
Query: 154 TCLTRLDHNRAMGQ------------ISERLKVHVSDVKNVIIWGNHSSTQYPDVNHATV 201
+T ++ +G + E + V + G H ++Q+ + V
Sbjct: 135 --VTGFPAHKVIGTGTLLDTARMQRAVGEAFDLDPRSVSGYNL-GEHGNSQFVAWSTVRV 191
Query: 202 TTSKGEKPVREAVADDNWLNTEFITTVQQRGAAIIK 237
+P+ + ++ G ++
Sbjct: 192 ----MGQPIVTLADAGDIDLAAIEEEARKGGFTVLN 223
|
| >3fef_A Putative glucosidase LPLD; gulosidase, structural genomics, unknown function, glycosidase, hydrolase, manganese, metal-binding, NAD, PSI- 2; 2.20A {Bacillus subtilis} Length = 450 | Back alignment and structure |
|---|
Score = 49.3 bits (117), Expect = 9e-07
Identities = 33/214 (15%), Positives = 73/214 (34%), Gaps = 34/214 (15%)
Query: 1 MAKNPLRVLVTGAAGQIGYALVPMIARGIMLGPDQPVILHMLDIEPAAEALNGVKMELID 60
M+ + +++ G G G+A + + + + + D++ EA K E+I
Sbjct: 1 MSLDQIKIAYIGG-GSQGWA--RSLMSDLSIDERMSGTVALYDLDF--EAAQ--KNEVIG 53
Query: 61 AAFPLLKG-VVATTDVVEACKDVN---IAVMVGGF---------PRKEGMERKDVMS--- 104
+ A + + +A + I+++ G P + G+ + +
Sbjct: 54 NHSGNGRWRYEAVSTLKKALSAADIVIISILPGSLDDMEVDVHLPERCGIYQSVGDTVGP 113
Query: 105 -------KNVSIYKAQASALEKHAAPNCKVLVVANPANTNALILKEFAPSIPAKNITCLT 157
+ V I+ A A+ +A P V+ NP + +L + P I A
Sbjct: 114 GGIIRGLRAVPIFAEIARAIRDYA-PESWVINYTNPMSVCTRVLYKVFPGIKAIGCCHEV 172
Query: 158 RLDHN---RAMGQISERLKVHVSDVKNVIIWGNH 188
+ + D++ ++ NH
Sbjct: 173 FGTQKLLAEMVTERLGIEVPRREDIRVNVLGINH 206
|
| >1u8x_X Maltose-6'-phosphate glucosidase; structural genomics, PSI, protein structure initiative, MCSG glucosidase, NAD-dependent; HET: G6P NAD; 2.05A {Bacillus subtilis} SCOP: c.2.1.5 d.162.1.2 Length = 472 | Back alignment and structure |
|---|
Score = 45.9 bits (108), Expect = 9e-06
Identities = 44/255 (17%), Positives = 82/255 (32%), Gaps = 37/255 (14%)
Query: 1 MAKNPLRVLVTGAAGQIGYALVPMIARGIMLG-PDQPVI-LHMLDIEPAAEALNGVKMEL 58
M K +++ G G P I ++ + P+ L + D + + ++
Sbjct: 24 MKKKSFSIVIAGG----GSTFTPGIVLMLLDHLEEFPIRKLKLYDNDKERQDRIAGACDV 79
Query: 59 IDAAFPLLKGVVATTDVVEACKDVN---IAVMVGGF---------PRKEGMERKDVMS-- 104
ATTD EA DV+ + VG + P K G+ ++
Sbjct: 80 FIREKAPDIEFAATTDPEEAFTDVDFVMAHIRVGKYAMRALDEQIPLKYGVVGQETCGPG 139
Query: 105 ------KNVSIYKAQASALEKHAAPNCKVLVVANPANTNALILKEFAPSIPAKNIT---- 154
+++ +EK++ P+ +L +NPA A + P+ NI
Sbjct: 140 GIAYGMRSIGGVLEILDYMEKYS-PDAWMLNYSNPAAIVAEATRRLRPNSKILNICDMPV 198
Query: 155 CLTRLDHNRAMGQISERLKVHVSDVKNVI----IWGNHSSTQYPDVNHATVTTSKGEKPV 210
+ + +KV + + I + P + + G P
Sbjct: 199 GIEDRMAQILGLSSRKEMKVRYYGLNHFGWWTSIQDQEGNDLMPKLKEH--VSQYGYIPK 256
Query: 211 REAVADDNWLNTEFI 225
EA A + N F
Sbjct: 257 TEAEAVEASWNDTFA 271
|
| >2hrz_A AGR_C_4963P, nucleoside-diphosphate-sugar epimerase; agrobacterium tumefa structural genomics, PSI-2, protein structure initiative; 1.85A {Agrobacterium tumefaciens} Length = 342 | Back alignment and structure |
|---|
Score = 41.2 bits (97), Expect = 3e-04
Identities = 13/97 (13%), Positives = 28/97 (28%), Gaps = 13/97 (13%)
Query: 1 MAKNPLRVLVTGAAGQIGYALVPMIARGIMLGPDQPVILHMLDIEPAAEALNGVKMELID 60
+ + + + GAAG +G L + + LG ++D+
Sbjct: 10 LYFQGMHIAIIGAAGMVGRKLTQRLVKDGSLGGKPVEKFTLIDVFQPEAPAG------FS 63
Query: 61 AAFPLLKGVVATTDVVEACKDVNI-------AVMVGG 90
A ++ E + A++ G
Sbjct: 64 GAVDARAADLSAPGEAEKLVEARPDVIFHLAAIVSGE 100
|
| >1s6y_A 6-phospho-beta-glucosidase; hydrolase, structural genomics, PSI, protein structure initi midwest center for structural genomics; 2.31A {Geobacillus stearothermophilus} SCOP: c.2.1.5 d.162.1.2 Length = 450 | Back alignment and structure |
|---|
Score = 40.9 bits (95), Expect = 4e-04
Identities = 36/243 (14%), Positives = 73/243 (30%), Gaps = 38/243 (15%)
Query: 1 MAKNPLRVLVTGAAGQIGYALVPMIARGIMLGPDQPVI--LHMLDIEPAAEALNGVKM-- 56
M K ++ G G + P + G++ + + L ++DI E L V
Sbjct: 4 MDKRL-KIATIGG----GSSYTPELVEGLIKRYHELPVGELWLVDIPEGKEKLEIVGALA 58
Query: 57 ELIDAAFPLLKGVVATTDVVEACKDVN---IAVMVGGF---------PRKEGMERKDVMS 104
+ + + + T D A + VGG P K G+ ++
Sbjct: 59 KRMVEKAGVPIEIHLTLDRRRALDGADFVTTQFRVGGLEARAKDERIPLKYGVIGQETNG 118
Query: 105 --------KNVSIYKAQASALEKHAAPNCKVLVVANPANTNALILKEFAPSIPAKNITCL 156
+ + + +E+ P+ ++ NPA + + + C
Sbjct: 119 PGGLFKGLRTIPVILDIIRDMEELC-PDAWLINFTNPAGMVTEAVLRYTKQEKVVGL-CN 176
Query: 157 TRLDHNRAMGQISERLKVHVSDVKNVIIWGNHSSTQYPDVNHATVTTSKGEKPVREAVAD 216
+++ L V V NH H + + + V + VA
Sbjct: 177 V---PIGMRMGVAKLLGVDADRVHIDFAGLNHMVF----GLHVYLDGVEVTEKVIDLVAH 229
Query: 217 DNW 219
+
Sbjct: 230 PDR 232
|
| >3rft_A Uronate dehydrogenase; apoenzyme, rossmann fold, NAD binding, oxidoreductase; 1.90A {Agrobacterium tumefaciens} PDB: 3rfv_A* 3rfx_A* Length = 267 | Back alignment and structure |
|---|
Score = 40.0 bits (94), Expect = 5e-04
Identities = 19/71 (26%), Positives = 33/71 (46%), Gaps = 8/71 (11%)
Query: 7 RVLVTGAAGQIGYALVP-MIARGIMLGPDQPVILHMLDIEPAAEALNGVKMELIDAAFPL 65
R+LVTGAAGQ+G + + + + + ++PA V+ +L DA
Sbjct: 5 RLLVTGAAGQLGRVMRERLAPMA-----EILRLADLSPLDPAGPNEECVQCDLADAN--A 57
Query: 66 LKGVVATTDVV 76
+ +VA D +
Sbjct: 58 VNAMVAGCDGI 68
|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 332 | |||
| 7mdh_A | 375 | Protein (malate dehydrogenase); chloroplastic mala | 100.0 | |
| 5mdh_A | 333 | Malate dehydrogenase; oxidoreductase, (NAD(A)-CHOH | 100.0 | |
| 4h7p_A | 345 | Malate dehydrogenase; ssgcid, structural G seattle | 100.0 | |
| 1b8p_A | 329 | Protein (malate dehydrogenase); oxidoreductase; 1. | 100.0 | |
| 3pqe_A | 326 | L-LDH, L-lactate dehydrogenase; FBP, oxidoreductas | 100.0 | |
| 3vku_A | 326 | L-LDH, L-lactate dehydrogenase; rossmann fold, NAD | 100.0 | |
| 4aj2_A | 331 | L-lactate dehydrogenase A chain; oxidoreductase-in | 100.0 | |
| 3nep_X | 314 | Malate dehydrogenase; halophIle, molecular adpatat | 100.0 | |
| 2x0j_A | 294 | Malate dehydrogenase; oxidoreductase, hyperthermop | 100.0 | |
| 3tl2_A | 315 | Malate dehydrogenase; center for structural genomi | 100.0 | |
| 3fi9_A | 343 | Malate dehydrogenase; structural genomics, oxidore | 100.0 | |
| 3p7m_A | 321 | Malate dehydrogenase; putative dehydrogenase, enzy | 100.0 | |
| 1oju_A | 294 | MDH, malate dehydrogenase; hyperthermophilic, oxid | 100.0 | |
| 3gvi_A | 324 | Malate dehydrogenase; NAD, oxidoreductase, tricarb | 100.0 | |
| 1ez4_A | 318 | Lactate dehydrogenase; rossmann fold, oxidoreducta | 100.0 | |
| 2zqz_A | 326 | L-LDH, L-lactate dehydrogenase; oxidoreductase, ro | 100.0 | |
| 1y7t_A | 327 | Malate dehydrogenase; NAD-dependent-MDH-NADPH comp | 100.0 | |
| 1o6z_A | 303 | MDH, malate dehydrogenase; halophilic, ION-binding | 100.0 | |
| 3hhp_A | 312 | Malate dehydrogenase; MDH, citric acid cycle, TCA | 100.0 | |
| 1y6j_A | 318 | L-lactate dehydrogenase; southeast collaboratory f | 100.0 | |
| 3d0o_A | 317 | L-LDH 1, L-lactate dehydrogenase 1; cytoplasm, gly | 100.0 | |
| 2d4a_B | 308 | Malate dehydrogenase; archaea, hyperthermophIle, o | 100.0 | |
| 2xxj_A | 310 | L-LDH, L-lactate dehydrogenase; oxidoreductase, hy | 100.0 | |
| 1hye_A | 313 | L-lactate/malate dehydrogenase; nucleotide binding | 100.0 | |
| 1ldn_A | 316 | L-lactate dehydrogenase; oxidoreductase(CHOH(D)-NA | 100.0 | |
| 3ldh_A | 330 | Lactate dehydrogenase; oxidoreductase, CHOH donor, | 100.0 | |
| 1ur5_A | 309 | Malate dehydrogenase; oxidoreductase, tricarboxyli | 100.0 | |
| 1t2d_A | 322 | LDH-P, L-lactate dehydrogenase; ternary complex, o | 100.0 | |
| 1pzg_A | 331 | LDH, lactate dehydrogenase; apicomplexa, APAD, tet | 100.0 | |
| 1mld_A | 314 | Malate dehydrogenase; oxidoreductase(NAD(A)-CHOH(D | 100.0 | |
| 2hjr_A | 328 | Malate dehydrogenase; malaria, structural genomics | 100.0 | |
| 1guz_A | 310 | Malate dehydrogenase; oxidoreductase, tricarboxyli | 100.0 | |
| 1smk_A | 326 | Malate dehydrogenase, glyoxysomal; tricarboxylic c | 100.0 | |
| 2i6t_A | 303 | Ubiquitin-conjugating enzyme E2-like isoform A; L- | 100.0 | |
| 2v6b_A | 304 | L-LDH, L-lactate dehydrogenase; oxidoreductase, ra | 100.0 | |
| 1a5z_A | 319 | L-lactate dehydrogenase; oxidoreductase, glycolysi | 100.0 | |
| 2ewd_A | 317 | Lactate dehydrogenase,; protein-substrate_cofactor | 100.0 | |
| 1hyh_A | 309 | L-hicdh, L-2-hydroxyisocaproate dehydrogenase; L-2 | 100.0 | |
| 1lld_A | 319 | L-lactate dehydrogenase; oxidoreductase(CHOH (D)-N | 100.0 | |
| 1s6y_A | 450 | 6-phospho-beta-glucosidase; hydrolase, structural | 100.0 | |
| 1up7_A | 417 | 6-phospho-beta-glucosidase; hydrolase, family4 hyd | 100.0 | |
| 1u8x_X | 472 | Maltose-6'-phosphate glucosidase; structural genom | 100.0 | |
| 3fef_A | 450 | Putative glucosidase LPLD; gulosidase, structural | 99.96 | |
| 1obb_A | 480 | Maltase, alpha-glucosidase; glycosidase, sulfinic | 99.9 | |
| 3u95_A | 477 | Glycoside hydrolase, family 4; hydrolysis, cytosol | 99.85 | |
| 2c29_D | 337 | Dihydroflavonol 4-reductase; flavonoids, short deh | 99.47 | |
| 4egb_A | 346 | DTDP-glucose 4,6-dehydratase; rhamnose pathway, ce | 99.46 | |
| 3m2p_A | 311 | UDP-N-acetylglucosamine 4-epimerase; SGXNY, 11155J | 99.45 | |
| 2rh8_A | 338 | Anthocyanidin reductase; flavonoids, rossmann fold | 99.44 | |
| 3ruf_A | 351 | WBGU; rossmann fold, UDP-hexose 4-epimerase, isome | 99.43 | |
| 4id9_A | 347 | Short-chain dehydrogenase/reductase; putative dehy | 99.42 | |
| 2x4g_A | 342 | Nucleoside-diphosphate-sugar epimerase; isomerase; | 99.4 | |
| 3sxp_A | 362 | ADP-L-glycero-D-mannoheptose-6-epimerase; rossman | 99.4 | |
| 3enk_A | 341 | UDP-glucose 4-epimerase; seattle structural genomi | 99.38 | |
| 1oc2_A | 348 | DTDP-glucose 4,6-dehydratase; lyase, NADH, rhamnos | 99.38 | |
| 3dhn_A | 227 | NAD-dependent epimerase/dehydratase; reductase, PF | 99.38 | |
| 2c5a_A | 379 | GDP-mannose-3', 5'-epimerase; short chain dehydrat | 99.38 | |
| 3ehe_A | 313 | UDP-glucose 4-epimerase (GALE-1); PSI-II, NYSGXRC, | 99.35 | |
| 3rft_A | 267 | Uronate dehydrogenase; apoenzyme, rossmann fold, N | 99.34 | |
| 3ko8_A | 312 | NAD-dependent epimerase/dehydratase; isomerase, UD | 99.34 | |
| 2hun_A | 336 | 336AA long hypothetical DTDP-glucose 4,6-dehydrat; | 99.33 | |
| 1i24_A | 404 | Sulfolipid biosynthesis protein SQD1; SDR, short-c | 99.33 | |
| 2pk3_A | 321 | GDP-6-deoxy-D-LYXO-4-hexulose reductase; SDR, shor | 99.32 | |
| 1orr_A | 347 | CDP-tyvelose-2-epimerase; rossmann fold, short-cha | 99.32 | |
| 2q1s_A | 377 | Putative nucleotide sugar epimerase/ dehydratase; | 99.31 | |
| 1sb8_A | 352 | WBPP; epimerase, 4-epimerase, UDP-galnac, UDP-GLCN | 99.31 | |
| 1rpn_A | 335 | GDP-mannose 4,6-dehydratase; short-chain dehydroge | 99.31 | |
| 2p4h_X | 322 | Vestitone reductase; NADPH-dependent reductase, is | 99.3 | |
| 2c20_A | 330 | UDP-glucose 4-epimerase; carbohydrate metabolism, | 99.3 | |
| 2x6t_A | 357 | ADP-L-glycero-D-manno-heptose-6-epimerase; isomera | 99.29 | |
| 1y1p_A | 342 | ARII, aldehyde reductase II; rossmann fold, short | 99.28 | |
| 1eq2_A | 310 | ADP-L-glycero-D-mannoheptose 6-epimerase; N-termin | 99.28 | |
| 1rkx_A | 357 | CDP-glucose-4,6-dehydratase; SDR, lyase; HET: NAD; | 99.28 | |
| 2p5y_A | 311 | UDP-glucose 4-epimerase; TTHA0591, structural geno | 99.28 | |
| 1r6d_A | 337 | TDP-glucose-4,6-dehydratase; rossmann fold, short- | 99.27 | |
| 1kew_A | 361 | RMLB;, DTDP-D-glucose 4,6-dehydratase; rossmann fo | 99.27 | |
| 3slg_A | 372 | PBGP3 protein; structural genomics, seattle struct | 99.27 | |
| 2gn4_A | 344 | FLAA1 protein, UDP-GLCNAC C6 dehydratase; rossmann | 99.24 | |
| 2z1m_A | 345 | GDP-D-mannose dehydratase; short-chain dehydrogena | 99.24 | |
| 2yy7_A | 312 | L-threonine dehydrogenase; thermolabIle, flavobact | 99.24 | |
| 3nzo_A | 399 | UDP-N-acetylglucosamine 4,6-dehydratase; structura | 99.23 | |
| 3st7_A | 369 | Capsular polysaccharide synthesis enzyme CAP5F; ro | 99.23 | |
| 1gy8_A | 397 | UDP-galactose 4-epimerase; oxidoreductase; HET: NA | 99.22 | |
| 2b69_A | 343 | UDP-glucuronate decarboxylase 1; UDP-glucoronic ac | 99.22 | |
| 1db3_A | 372 | GDP-mannose 4,6-dehydratase; NADP, GDP-fucose, lya | 99.21 | |
| 3e8x_A | 236 | Putative NAD-dependent epimerase/dehydratase; stru | 99.2 | |
| 3vps_A | 321 | TUNA, NAD-dependent epimerase/dehydratase; tunicam | 99.2 | |
| 3sc6_A | 287 | DTDP-4-dehydrorhamnose reductase; RFBD, structural | 99.2 | |
| 3ew7_A | 221 | LMO0794 protein; Q8Y8U8_lismo, putative NAD-depend | 99.2 | |
| 2pzm_A | 330 | Putative nucleotide sugar epimerase/ dehydratase; | 99.19 | |
| 1e6u_A | 321 | GDP-fucose synthetase; epimerase/reductase, SDR, R | 99.19 | |
| 1ek6_A | 348 | UDP-galactose 4-epimerase; short-chain dehydrogena | 99.18 | |
| 1t2a_A | 375 | GDP-mannose 4,6 dehydratase; structural genomics c | 99.17 | |
| 3ay3_A | 267 | NAD-dependent epimerase/dehydratase; glucuronic ac | 99.17 | |
| 1udb_A | 338 | Epimerase, UDP-galactose-4-epimerase; isomerase; H | 99.16 | |
| 4b8w_A | 319 | GDP-L-fucose synthase; oxidoreductase; HET: NAP GD | 99.16 | |
| 3m1a_A | 281 | Putative dehydrogenase; short, PSI, MCSG, structur | 99.16 | |
| 1n2s_A | 299 | DTDP-4-, DTDP-glucose oxidoreductase; rossman-fold | 99.16 | |
| 3dqp_A | 219 | Oxidoreductase YLBE; alpha-beta protein., structur | 99.14 | |
| 2ydy_A | 315 | Methionine adenosyltransferase 2 subunit beta; oxi | 99.14 | |
| 2hrz_A | 342 | AGR_C_4963P, nucleoside-diphosphate-sugar epimeras | 99.13 | |
| 2bll_A | 345 | Protein YFBG; decarboxylase, short chain dehydroge | 99.13 | |
| 3ajr_A | 317 | NDP-sugar epimerase; L-threonine dehydrogenase, L- | 99.12 | |
| 4dqv_A | 478 | Probable peptide synthetase NRP (peptide synthase; | 99.11 | |
| 1n7h_A | 381 | GDP-D-mannose-4,6-dehydratase; rossmann fold, SDR, | 99.09 | |
| 1z45_A | 699 | GAL10 bifunctional protein; epimerase, mutarotase, | 99.09 | |
| 1vl0_A | 292 | DTDP-4-dehydrorhamnose reductase, RFBD ortholog; s | 99.08 | |
| 4f6c_A | 427 | AUSA reductase domain protein; thioester reductase | 99.07 | |
| 3h2s_A | 224 | Putative NADH-flavin reductase; Q03B84, NESG, LCR1 | 99.07 | |
| 2q1w_A | 333 | Putative nucleotide sugar epimerase/ dehydratase; | 99.06 | |
| 3gpi_A | 286 | NAD-dependent epimerase/dehydratase; structural ge | 99.05 | |
| 2a35_A | 215 | Hypothetical protein PA4017; alpha-beta-alpha sand | 99.05 | |
| 1xq6_A | 253 | Unknown protein; structural genomics, protein stru | 99.04 | |
| 2dkn_A | 255 | 3-alpha-hydroxysteroid dehydrogenase; oxidoreducta | 99.02 | |
| 3oh8_A | 516 | Nucleoside-diphosphate sugar epimerase (SULA FAMI; | 99.01 | |
| 2v6g_A | 364 | Progesterone 5-beta-reductase; tyrosine-dependent | 99.01 | |
| 4b4o_A | 298 | Epimerase family protein SDR39U1; isomerase; HET: | 99.0 | |
| 2wsb_A | 254 | Galactitol dehydrogenase; oxidoreductase, SDR, ros | 99.0 | |
| 3qiv_A | 253 | Short-chain dehydrogenase or 3-oxoacyl-[acyl-CARR | 98.99 | |
| 4e6p_A | 259 | Probable sorbitol dehydrogenase (L-iditol 2-dehyd; | 98.98 | |
| 1z7e_A | 660 | Protein aRNA; rossmann fold, OB-like fold, hydrola | 98.98 | |
| 3d7l_A | 202 | LIN1944 protein; APC89317, structural genomics, PS | 98.97 | |
| 1fmc_A | 255 | 7 alpha-hydroxysteroid dehydrogenase; short-chain | 98.97 | |
| 3awd_A | 260 | GOX2181, putative polyol dehydrogenase; oxidoreduc | 98.96 | |
| 1nff_A | 260 | Putative oxidoreductase RV2002; directed evolution | 98.96 | |
| 1cyd_A | 244 | Carbonyl reductase; short-chain dehydrogenase, oxi | 98.96 | |
| 2cfc_A | 250 | 2-(R)-hydroxypropyl-COM dehydrogenase; NAD, oxidor | 98.93 | |
| 3d3w_A | 244 | L-xylulose reductase; uronate cycle, short-chain d | 98.91 | |
| 4f6l_B | 508 | AUSA reductase domain protein; thioester reductase | 98.91 | |
| 1xq1_A | 266 | Putative tropinone reducatse; structural genomics, | 98.91 | |
| 3tpc_A | 257 | Short chain alcohol dehydrogenase-related dehydro; | 98.91 | |
| 2pd6_A | 264 | Estradiol 17-beta-dehydrogenase 8; short-chain deh | 98.91 | |
| 1sby_A | 254 | Alcohol dehydrogenase; ternary complex, NAD, trifl | 98.9 | |
| 3ak4_A | 263 | NADH-dependent quinuclidinone reductase; SDR, (R)- | 98.9 | |
| 2o23_A | 265 | HADH2 protein; HSD17B10, schad, ERAB, type II HADH | 98.9 | |
| 3ai3_A | 263 | NADPH-sorbose reductase; rossmann-fold, NADPH-depe | 98.89 | |
| 2bgk_A | 278 | Rhizome secoisolariciresinol dehydrogenase; oxidor | 98.89 | |
| 2pnf_A | 248 | 3-oxoacyl-[acyl-carrier-protein] reductase; short | 98.89 | |
| 3ius_A | 286 | Uncharacterized conserved protein; APC63810, silic | 98.88 | |
| 2z1n_A | 260 | Dehydrogenase; reductase, SDR, oxidoreductase; 1.8 | 98.88 | |
| 3tzq_B | 271 | Short-chain type dehydrogenase/reductase; ssgcid, | 98.88 | |
| 1hdo_A | 206 | Biliverdin IX beta reductase; foetal metabolism, H | 98.87 | |
| 2ehd_A | 234 | Oxidoreductase, oxidoreductase, short-chain dehydr | 98.87 | |
| 2hq1_A | 247 | Glucose/ribitol dehydrogenase; CTH-1438, structura | 98.87 | |
| 3i6i_A | 346 | Putative leucoanthocyanidin reductase 1; rossmann | 98.87 | |
| 1w6u_A | 302 | 2,4-dienoyl-COA reductase, mitochondrial precursor | 98.87 | |
| 3r6d_A | 221 | NAD-dependent epimerase/dehydratase; structural ge | 98.85 | |
| 3osu_A | 246 | 3-oxoacyl-[acyl-carrier-protein] reductase; struct | 98.84 | |
| 3r3s_A | 294 | Oxidoreductase; structural genomics, csgid, center | 98.83 | |
| 2ph3_A | 245 | 3-oxoacyl-[acyl carrier protein] reductase; TTHA04 | 98.83 | |
| 1ja9_A | 274 | 4HNR, 1,3,6,8-tetrahydroxynaphthalene reductase; p | 98.83 | |
| 4dqx_A | 277 | Probable oxidoreductase protein; structural genomi | 98.83 | |
| 3svt_A | 281 | Short-chain type dehydrogenase/reductase; ssgcid, | 98.82 | |
| 1hdc_A | 254 | 3-alpha, 20 beta-hydroxysteroid dehydrogenase; oxi | 98.82 | |
| 2wm3_A | 299 | NMRA-like family domain containing protein 1; unkn | 98.82 | |
| 1qsg_A | 265 | Enoyl-[acyl-carrier-protein] reductase; enoyl redu | 98.82 | |
| 2d1y_A | 256 | Hypothetical protein TT0321; strucrtural genomics, | 98.82 | |
| 1gee_A | 261 | Glucose 1-dehydrogenase; short-chain dehydrogenase | 98.82 | |
| 3op4_A | 248 | 3-oxoacyl-[acyl-carrier protein] reductase; 3-keto | 98.82 | |
| 2yut_A | 207 | Putative short-chain oxidoreductase; alpha and bet | 98.82 | |
| 1zk4_A | 251 | R-specific alcohol dehydrogenase; short chain redu | 98.81 | |
| 2bka_A | 242 | CC3, TAT-interacting protein TIP30; NADPH, PEG600, | 98.8 | |
| 1xgk_A | 352 | Nitrogen metabolite repression regulator NMRA; ros | 98.8 | |
| 1uay_A | 242 | Type II 3-hydroxyacyl-COA dehydrogenase; beta oxid | 98.8 | |
| 3v2g_A | 271 | 3-oxoacyl-[acyl-carrier-protein] reductase; struct | 98.8 | |
| 3guy_A | 230 | Short-chain dehydrogenase/reductase SDR; structura | 98.8 | |
| 3pk0_A | 262 | Short-chain dehydrogenase/reductase SDR; ssgcid, s | 98.8 | |
| 1xg5_A | 279 | ARPG836; short chain dehydrogenase, human, SGC, st | 98.8 | |
| 1yxm_A | 303 | Pecra, peroxisomal trans 2-enoyl COA reductase; pe | 98.79 | |
| 2ae2_A | 260 | Protein (tropinone reductase-II); oxidoreductase, | 98.79 | |
| 3n74_A | 261 | 3-ketoacyl-(acyl-carrier-protein) reductase; seatt | 98.79 | |
| 2wyu_A | 261 | Enoyl-[acyl carrier protein] reductase; oxidoreduc | 98.79 | |
| 3orf_A | 251 | Dihydropteridine reductase; alpha-beta-alpha sandw | 98.79 | |
| 4eso_A | 255 | Putative oxidoreductase; NADP, structural genomics | 98.79 | |
| 2q2v_A | 255 | Beta-D-hydroxybutyrate dehydrogenase; SDR, oxidore | 98.79 | |
| 2fwm_X | 250 | 2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase; e | 98.79 | |
| 3rwb_A | 247 | TPLDH, pyridoxal 4-dehydrogenase; short chain dehy | 98.79 | |
| 3lyl_A | 247 | 3-oxoacyl-(acyl-carrier-protein) reductase; alpha | 98.78 | |
| 3f9i_A | 249 | 3-oxoacyl-[acyl-carrier-protein] reductase; 3-keto | 98.78 | |
| 3l6e_A | 235 | Oxidoreductase, short-chain dehydrogenase/reducta; | 98.78 | |
| 3grp_A | 266 | 3-oxoacyl-(acyl carrierprotein) reductase; structu | 98.78 | |
| 2b4q_A | 276 | Rhamnolipids biosynthesis 3-oxoacyl-[acyl- carrier | 98.77 | |
| 1hxh_A | 253 | 3BETA/17BETA-hydroxysteroid dehydrogenase; alpha-b | 98.77 | |
| 2p91_A | 285 | Enoyl-[acyl-carrier-protein] reductase [NADH]; NAD | 98.77 | |
| 1ooe_A | 236 | Dihydropteridine reductase; structural genomics, P | 98.76 | |
| 2rhc_B | 277 | Actinorhodin polyketide ketoreductase; oxidoreduct | 98.76 | |
| 3t4x_A | 267 | Oxidoreductase, short chain dehydrogenase/reducta; | 98.76 | |
| 3oig_A | 266 | Enoyl-[acyl-carrier-protein] reductase [NADH]; fat | 98.76 | |
| 1iy8_A | 267 | Levodione reductase; oxidoreductase; HET: NAD; 1.6 | 98.75 | |
| 3afn_B | 258 | Carbonyl reductase; alpha/beta/alpha, rossmann-fol | 98.75 | |
| 1ae1_A | 273 | Tropinone reductase-I; oxidoreductase, tropane alk | 98.75 | |
| 1mxh_A | 276 | Pteridine reductase 2; SDR topology, protein-subst | 98.74 | |
| 3rd5_A | 291 | Mypaa.01249.C; ssgcid, structural genomics, seattl | 98.74 | |
| 1spx_A | 278 | Short-chain reductase family member (5L265); paral | 98.74 | |
| 3gaf_A | 256 | 7-alpha-hydroxysteroid dehydrogenase; seattle stru | 98.74 | |
| 3dii_A | 247 | Short-chain dehydrogenase/reductase SDR; SCOR, ros | 98.74 | |
| 1uls_A | 245 | Putative 3-oxoacyl-acyl carrier protein reductase; | 98.74 | |
| 3ijr_A | 291 | Oxidoreductase, short chain dehydrogenase/reducta; | 98.74 | |
| 3qvo_A | 236 | NMRA family protein; structural genomics, PSI-biol | 98.73 | |
| 3s55_A | 281 | Putative short-chain dehydrogenase/reductase; stru | 98.73 | |
| 3ioy_A | 319 | Short-chain dehydrogenase/reductase SDR; structura | 98.73 | |
| 4dyv_A | 272 | Short-chain dehydrogenase/reductase SDR; structura | 98.73 | |
| 1dhr_A | 241 | Dihydropteridine reductase; oxidoreductase(acting | 98.73 | |
| 3h7a_A | 252 | Short chain dehydrogenase; oxidoreductase, PSI-2, | 98.73 | |
| 2ew8_A | 249 | (S)-1-phenylethanol dehydrogenase; transferase; 2. | 98.72 | |
| 1yb1_A | 272 | 17-beta-hydroxysteroid dehydrogenase type XI; shor | 98.72 | |
| 3cxt_A | 291 | Dehydrogenase with different specificities; rossma | 98.72 | |
| 2c07_A | 285 | 3-oxoacyl-(acyl-carrier protein) reductase; oxidor | 98.72 | |
| 2ag5_A | 246 | DHRS6, dehydrogenase/reductase (SDR family) member | 98.72 | |
| 3v8b_A | 283 | Putative dehydrogenase, possibly 3-oxoacyl-[acyl- | 98.72 | |
| 3i4f_A | 264 | 3-oxoacyl-[acyl-carrier protein] reductase; struct | 98.72 | |
| 3gvc_A | 277 | Oxidoreductase, probable short-chain type dehydrog | 98.72 | |
| 1edo_A | 244 | Beta-keto acyl carrier protein reductase; nucleoti | 98.71 | |
| 3pxx_A | 287 | Carveol dehydrogenase; structural genomics, seattl | 98.71 | |
| 3uf0_A | 273 | Short-chain dehydrogenase/reductase SDR; gluconate | 98.7 | |
| 3v2h_A | 281 | D-beta-hydroxybutyrate dehydrogenase; structural g | 98.7 | |
| 3gem_A | 260 | Short chain dehydrogenase; structural genomics, AP | 98.7 | |
| 2zat_A | 260 | Dehydrogenase/reductase SDR family member 4; alpha | 98.7 | |
| 4ibo_A | 271 | Gluconate dehydrogenase; enzyme function initiativ | 98.7 | |
| 3e48_A | 289 | Putative nucleoside-diphosphate-sugar epimerase; a | 98.7 | |
| 2bd0_A | 244 | Sepiapterin reductase; oxidoreductase; HET: NAP BI | 98.7 | |
| 1x1t_A | 260 | D(-)-3-hydroxybutyrate dehydrogenase; NAD, NADH, S | 98.7 | |
| 3ctm_A | 279 | Carbonyl reductase; alcohol dehydrogenase, short-c | 98.7 | |
| 3ksu_A | 262 | 3-oxoacyl-acyl carrier protein reductase; structur | 98.7 | |
| 3k31_A | 296 | Enoyl-(acyl-carrier-protein) reductase; ssgcid, NI | 98.69 | |
| 2jl1_A | 287 | Triphenylmethane reductase; oxidoreductase, biorem | 98.69 | |
| 2pd4_A | 275 | Enoyl-[acyl-carrier-protein] reductase [NADH]; ant | 98.69 | |
| 3tjr_A | 301 | Short chain dehydrogenase; structural genomics, se | 98.69 | |
| 3u5t_A | 267 | 3-oxoacyl-[acyl-carrier-protein] reductase; struct | 98.69 | |
| 1g0o_A | 283 | Trihydroxynaphthalene reductase; protein-NADPH-act | 98.69 | |
| 4egf_A | 266 | L-xylulose reductase; structural genomics, ssgcid, | 98.68 | |
| 1xhl_A | 297 | Short-chain dehydrogenase/reductase family member | 98.68 | |
| 1fjh_A | 257 | 3alpha-hydroxysteroid dehydrogenase/carbonyl reduc | 98.68 | |
| 1yo6_A | 250 | Putative carbonyl reductase sniffer; tyrosine-depe | 98.68 | |
| 3rih_A | 293 | Short chain dehydrogenase or reductase; structural | 98.68 | |
| 1sny_A | 267 | Sniffer CG10964-PA; alpha and beta protein, rossma | 98.68 | |
| 1xkq_A | 280 | Short-chain reductase family member (5D234); parra | 98.67 | |
| 1h5q_A | 265 | NADP-dependent mannitol dehydrogenase; oxidoreduct | 98.67 | |
| 2a4k_A | 263 | 3-oxoacyl-[acyl carrier protein] reductase; reduct | 98.67 | |
| 3asu_A | 248 | Short-chain dehydrogenase/reductase SDR; SDR famil | 98.67 | |
| 4iin_A | 271 | 3-ketoacyl-acyl carrier protein reductase (FABG); | 98.66 | |
| 3grk_A | 293 | Enoyl-(acyl-carrier-protein) reductase (NADH); ssg | 98.66 | |
| 1qyd_A | 313 | Pinoresinol-lariciresinol reductase; NADPH-depende | 98.66 | |
| 2gdz_A | 267 | NAD+-dependent 15-hydroxyprostaglandin dehydrogen; | 98.65 | |
| 3is3_A | 270 | 17BETA-hydroxysteroid dehydrogenase; short chain d | 98.65 | |
| 3pgx_A | 280 | Carveol dehydrogenase; structural genomics, seattl | 98.65 | |
| 1wma_A | 276 | Carbonyl reductase [NADPH] 1; oxidoreductase; HET: | 98.65 | |
| 3uce_A | 223 | Dehydrogenase; rossmann fold, oxidoreductase; HET: | 98.65 | |
| 3un1_A | 260 | Probable oxidoreductase; structural genomics, PSI- | 98.65 | |
| 1vl8_A | 267 | Gluconate 5-dehydrogenase; TM0441, structural geno | 98.64 | |
| 2uvd_A | 246 | 3-oxoacyl-(acyl-carrier-protein) reductase; beta-k | 98.64 | |
| 3u9l_A | 324 | 3-oxoacyl-[acyl-carrier-protein] reductase; struct | 98.64 | |
| 3a28_C | 258 | L-2.3-butanediol dehydrogenase; chiral substrate r | 98.64 | |
| 3sju_A | 279 | Keto reductase; short-chain dehydrogenase, oxidore | 98.64 | |
| 4da9_A | 280 | Short-chain dehydrogenase/reductase; structural ge | 98.64 | |
| 3edm_A | 259 | Short chain dehydrogenase; structural genomics, ox | 98.64 | |
| 3sx2_A | 278 | Putative 3-ketoacyl-(acyl-carrier-protein) reduct; | 98.63 | |
| 3zv4_A | 281 | CIS-2,3-dihydrobiphenyl-2,3-DIOL dehydrogenase; ox | 98.63 | |
| 4e3z_A | 272 | Putative oxidoreductase protein; PSI-biology, stru | 98.63 | |
| 3tfo_A | 264 | Putative 3-oxoacyl-(acyl-carrier-protein) reducta; | 98.63 | |
| 1yde_A | 270 | Retinal dehydrogenase/reductase 3; oxidoreductase, | 98.63 | |
| 3rkr_A | 262 | Short chain oxidoreductase; rossmann fold; HET: NA | 98.63 | |
| 3oid_A | 258 | Enoyl-[acyl-carrier-protein] reductase [NADPH]; fa | 98.63 | |
| 2x9g_A | 288 | PTR1, pteridine reductase; short chain dehydrogena | 98.63 | |
| 2ggs_A | 273 | 273AA long hypothetical DTDP-4-dehydrorhamnose red | 98.62 | |
| 3i1j_A | 247 | Oxidoreductase, short chain dehydrogenase/reducta; | 98.62 | |
| 3f1l_A | 252 | Uncharacterized oxidoreductase YCIK; E. coli, NADP | 98.62 | |
| 1geg_A | 256 | Acetoin reductase; SDR family, oxidoreductase; HET | 98.62 | |
| 3r1i_A | 276 | Short-chain type dehydrogenase/reductase; structur | 98.61 | |
| 3lf2_A | 265 | Short chain oxidoreductase Q9HYA2; SDR, SCOR, ross | 98.61 | |
| 2jah_A | 247 | Clavulanic acid dehydrogenase; short-chain dehydro | 98.61 | |
| 3nrc_A | 280 | Enoyl-[acyl-carrier-protein] reductase (NADH); ros | 98.61 | |
| 1zem_A | 262 | Xylitol dehydrogenase; rossmann fold, dinucleotide | 98.61 | |
| 4dry_A | 281 | 3-oxoacyl-[acyl-carrier-protein] reductase; struct | 98.61 | |
| 2dtx_A | 264 | Glucose 1-dehydrogenase related protein; rossmann | 98.61 | |
| 3p19_A | 266 | BFPVVD8, putative blue fluorescent protein; rossma | 98.61 | |
| 2nwq_A | 272 | Probable short-chain dehydrogenase; oxidoreductase | 98.6 | |
| 3imf_A | 257 | Short chain dehydrogenase; structural genomics, in | 98.6 | |
| 3tl3_A | 257 | Short-chain type dehydrogenase/reductase; ssgcid, | 98.6 | |
| 1zmt_A | 254 | Haloalcohol dehalogenase HHEC; halohydrin dehaloge | 98.6 | |
| 1xu9_A | 286 | Corticosteroid 11-beta-dehydrogenase, isozyme 1; h | 98.6 | |
| 4dmm_A | 269 | 3-oxoacyl-[acyl-carrier-protein] reductase; rossma | 98.59 | |
| 3nyw_A | 250 | Putative oxidoreductase; fatty acid synthesis,3-ox | 98.59 | |
| 3ppi_A | 281 | 3-hydroxyacyl-COA dehydrogenase type-2; ssgcid, de | 98.58 | |
| 3ftp_A | 270 | 3-oxoacyl-[acyl-carrier protein] reductase; ssgcid | 98.58 | |
| 3sc4_A | 285 | Short chain dehydrogenase (A0QTM2 homolog); ssgcid | 98.58 | |
| 3tox_A | 280 | Short chain dehydrogenase; structural genomics, PS | 98.58 | |
| 3ek2_A | 271 | Enoyl-(acyl-carrier-protein) reductase (NADH); ssg | 98.57 | |
| 2ekp_A | 239 | 2-deoxy-D-gluconate 3-dehydrogenase; structural ge | 98.57 | |
| 3tsc_A | 277 | Putative oxidoreductase; structural genomics, seat | 98.56 | |
| 3kvo_A | 346 | Hydroxysteroid dehydrogenase-like protein 2; HSDL2 | 98.56 | |
| 3ezl_A | 256 | Acetoacetyl-COA reductase; ssgcid, acetyacetyl-COA | 98.56 | |
| 2r6j_A | 318 | Eugenol synthase 1; phenylpropene, PIP reductase, | 98.54 | |
| 3ucx_A | 264 | Short chain dehydrogenase; ssgcid, seattle structu | 98.54 | |
| 3l77_A | 235 | Short-chain alcohol dehydrogenase; oxidoreductase; | 98.54 | |
| 3t7c_A | 299 | Carveol dehydrogenase; structural genomics, seattl | 98.54 | |
| 3o38_A | 266 | Short chain dehydrogenase; tuberculosis, ortholog | 98.54 | |
| 1o5i_A | 249 | 3-oxoacyl-(acyl carrier protein) reductase; TM1169 | 98.53 | |
| 2zcu_A | 286 | Uncharacterized oxidoreductase YTFG; alpha-beta sa | 98.53 | |
| 1gz6_A | 319 | Estradiol 17 beta-dehydrogenase 4; 17BETA-HSD4, MF | 98.53 | |
| 4imr_A | 275 | 3-oxoacyl-(acyl-carrier-protein) reductase; oxidor | 98.53 | |
| 3oec_A | 317 | Carveol dehydrogenase (mytha.01326.C, A0R518 HOMO; | 98.53 | |
| 1qyc_A | 308 | Phenylcoumaran benzylic ether reductase PT1; NADPH | 98.53 | |
| 2nm0_A | 253 | Probable 3-oxacyl-(acyl-carrier-protein) reductas; | 98.52 | |
| 2gas_A | 307 | Isoflavone reductase; NADPH-dependent reductase, o | 98.51 | |
| 1e7w_A | 291 | Pteridine reductase; dihydrofolate reductase, shor | 98.5 | |
| 2qhx_A | 328 | Pteridine reductase 1; oxidoreductase, short-chain | 98.5 | |
| 3uxy_A | 266 | Short-chain dehydrogenase/reductase SDR; structura | 98.49 | |
| 4iiu_A | 267 | 3-oxoacyl-[acyl-carrier protein] reductase; struct | 98.49 | |
| 3uve_A | 286 | Carveol dehydrogenase ((+)-trans-carveol dehydrog; | 98.48 | |
| 3vtz_A | 269 | Glucose 1-dehydrogenase; rossmann fold, oxidoreduc | 98.48 | |
| 3c1o_A | 321 | Eugenol synthase; phenylpropene, PIP reductase, sh | 98.48 | |
| 4fc7_A | 277 | Peroxisomal 2,4-dienoyl-COA reductase; SDR/rossman | 98.47 | |
| 4e4y_A | 244 | Short chain dehydrogenase family protein; structur | 98.46 | |
| 1uzm_A | 247 | 3-oxoacyl-[acyl-carrier protein] reductase; beta-k | 98.45 | |
| 3rku_A | 287 | Oxidoreductase YMR226C; substrate fingerprint, sho | 98.45 | |
| 2h7i_A | 269 | Enoyl-[acyl-carrier-protein] reductase [NADH]; oxi | 98.44 | |
| 3kzv_A | 254 | Uncharacterized oxidoreductase YIR035C; cytoplasmi | 98.44 | |
| 1zmo_A | 244 | Halohydrin dehalogenase; haloalcohol dehalogenase, | 98.43 | |
| 3icc_A | 255 | Putative 3-oxoacyl-(acyl carrier protein) reducta; | 98.42 | |
| 1oaa_A | 259 | Sepiapterin reductase; tetrahydrobiopterin, oxidor | 98.42 | |
| 3gk3_A | 269 | Acetoacetyl-COA reductase; acetoacetyl-CO reductas | 98.41 | |
| 3e03_A | 274 | Short chain dehydrogenase; structural genomics, PS | 98.4 | |
| 3gdg_A | 267 | Probable NADP-dependent mannitol dehydrogenase; ro | 98.39 | |
| 4fgs_A | 273 | Probable dehydrogenase protein; PSI-biology, nysgr | 98.38 | |
| 3e9n_A | 245 | Putative short-chain dehydrogenase/reductase; stru | 98.37 | |
| 3qlj_A | 322 | Short chain dehydrogenase; structural genomics, se | 98.37 | |
| 3ged_A | 247 | Short-chain dehydrogenase/reductase SDR; SCOR, ros | 98.34 | |
| 4fn4_A | 254 | Short chain dehydrogenase; NADH-binding, rossmann | 98.34 | |
| 3o26_A | 311 | Salutaridine reductase; short chain dehydrogenase/ | 98.33 | |
| 2qq5_A | 260 | DHRS1, dehydrogenase/reductase SDR family member 1 | 98.3 | |
| 3gg2_A | 450 | Sugar dehydrogenase, UDP-glucose/GDP-mannose dehyd | 98.28 | |
| 4g81_D | 255 | Putative hexonate dehydrogenase; enzyme function i | 98.27 | |
| 1jtv_A | 327 | 17 beta-hydroxysteroid dehydrogenase type 1; stero | 98.26 | |
| 3ic5_A | 118 | Putative saccharopine dehydrogenase; structural ge | 98.24 | |
| 3ado_A | 319 | Lambda-crystallin; L-gulonate 3-dehydrogenase, str | 98.24 | |
| 2fr1_A | 486 | Erythromycin synthase, eryai; short chain dehydrog | 98.21 | |
| 2o3j_A | 481 | UDP-glucose 6-dehydrogenase; structural genomics, | 98.18 | |
| 4hp8_A | 247 | 2-deoxy-D-gluconate 3-dehydrogenase; enzyme functi | 98.18 | |
| 3k96_A | 356 | Glycerol-3-phosphate dehydrogenase [NAD(P)+]; GPSA | 98.15 | |
| 1f0y_A | 302 | HCDH, L-3-hydroxyacyl-COA dehydrogenase; abortive | 98.14 | |
| 4fs3_A | 256 | Enoyl-[acyl-carrier-protein] reductase [NADPH] FA; | 98.13 | |
| 3g79_A | 478 | NDP-N-acetyl-D-galactosaminuronic acid dehydrogen; | 98.12 | |
| 3oml_A | 613 | GH14720P, peroxisomal multifunctional enzyme type | 98.12 | |
| 4gkb_A | 258 | 3-oxoacyl-[acyl-carrier protein] reductase; putati | 98.09 | |
| 4e12_A | 283 | Diketoreductase; oxidoreductase, NADH; HET: 1PE; 1 | 98.09 | |
| 1d7o_A | 297 | Enoyl-[acyl-carrier protein] reductase (NADH) PRE; | 98.09 | |
| 3u0b_A | 454 | Oxidoreductase, short chain dehydrogenase/reducta | 98.08 | |
| 2z5l_A | 511 | Tylkr1, tylactone synthase starter module and modu | 98.07 | |
| 1mv8_A | 436 | GMD, GDP-mannose 6-dehydrogenase; rossman fold, do | 98.05 | |
| 3pid_A | 432 | UDP-glucose 6-dehydrogenase; rossmann fold, oxidor | 98.03 | |
| 2y0c_A | 478 | BCEC, UDP-glucose dehydrogenase; oxidoreductase, c | 97.98 | |
| 2q3e_A | 467 | UDP-glucose 6-dehydrogenase; hexamer, structural g | 97.95 | |
| 1dlj_A | 402 | UDP-glucose dehydrogenase; rossmann fold, ternary | 97.93 | |
| 2dpo_A | 319 | L-gulonate 3-dehydrogenase; structural genomics, N | 97.93 | |
| 4h15_A | 261 | Short chain alcohol dehydrogenase-related dehydro; | 97.93 | |
| 3vtf_A | 444 | UDP-glucose 6-dehydrogenase; two discrete alpha/be | 97.91 | |
| 4b79_A | 242 | PA4098, probable short-chain dehydrogenase; oxidor | 97.91 | |
| 4a7p_A | 446 | UDP-glucose dehydrogenase; oxidoreductase, carbohy | 97.89 | |
| 1jay_A | 212 | Coenzyme F420H2:NADP+ oxidoreductase (FNO); rossma | 97.84 | |
| 3k6j_A | 460 | Protein F01G10.3, confirmed by transcript evidenc; | 97.84 | |
| 3mog_A | 483 | Probable 3-hydroxybutyryl-COA dehydrogenase; struc | 97.81 | |
| 3mje_A | 496 | AMPHB; rossmann fold, oxidoreductase; HET: NDP; 1. | 97.81 | |
| 3ghy_A | 335 | Ketopantoate reductase protein; oxidoreductase, NA | 97.75 | |
| 3abi_A | 365 | Putative uncharacterized protein PH1688; L-lysine | 97.75 | |
| 3qp9_A | 525 | Type I polyketide synthase pikaii; rossmann fold, | 97.71 | |
| 1lu9_A | 287 | Methylene tetrahydromethanopterin dehydrogenase; a | 97.68 | |
| 2ptg_A | 319 | Enoyl-acyl carrier reductase; apicomplexa, enoyl ( | 97.66 | |
| 3hwr_A | 318 | 2-dehydropantoate 2-reductase; YP_299159.1, PANE/A | 97.62 | |
| 3c24_A | 286 | Putative oxidoreductase; YP_511008.1, structural g | 97.61 | |
| 3c85_A | 183 | Putative glutathione-regulated potassium-efflux S | 97.61 | |
| 2et6_A | 604 | (3R)-hydroxyacyl-COA dehydrogenase; MFE-2, beta-ox | 97.61 | |
| 2o2s_A | 315 | Enoyl-acyl carrier reductase; enoyl reductase, tri | 97.6 | |
| 2hmt_A | 144 | YUAA protein; RCK, KTN, KTR, KTRA, ktrab, membrane | 97.54 | |
| 3zwc_A | 742 | Peroxisomal bifunctional enzyme; beta oxidation pa | 97.51 | |
| 3llv_A | 141 | Exopolyphosphatase-related protein; NAD(P)-binding | 97.49 | |
| 3d1l_A | 266 | Putative NADP oxidoreductase BF3122; structural ge | 97.48 | |
| 3pef_A | 287 | 6-phosphogluconate dehydrogenase, NAD-binding; gam | 97.48 | |
| 1bg6_A | 359 | N-(1-D-carboxylethyl)-L-norvaline dehydrogenase; L | 97.47 | |
| 1x0v_A | 354 | GPD-C, GPDH-C, glycerol-3-phosphate dehydrogenase | 97.47 | |
| 1zcj_A | 463 | Peroxisomal bifunctional enzyme; peroxisomal multi | 97.46 | |
| 3tri_A | 280 | Pyrroline-5-carboxylate reductase; amino acid bios | 97.46 | |
| 3i83_A | 320 | 2-dehydropantoate 2-reductase; structural genomics | 97.45 | |
| 3qsg_A | 312 | NAD-binding phosphogluconate dehydrogenase-like P; | 97.45 | |
| 2ew2_A | 316 | 2-dehydropantoate 2-reductase, putative; alpha-str | 97.44 | |
| 3qha_A | 296 | Putative oxidoreductase; seattle structural genomi | 97.44 | |
| 2h78_A | 302 | Hibadh, 3-hydroxyisobutyrate dehydrogenase; APC601 | 97.42 | |
| 1yj8_A | 375 | Glycerol-3-phosphate dehydrogenase; SGPP, structur | 97.41 | |
| 1evy_A | 366 | Glycerol-3-phosphate dehydrogenase; rossmann fold, | 97.38 | |
| 4huj_A | 220 | Uncharacterized protein; PSI-biology, nysgrc, stru | 97.38 | |
| 2rcy_A | 262 | Pyrroline carboxylate reductase; malaria, structur | 97.37 | |
| 3dtt_A | 245 | NADP oxidoreductase; structural genomics, joint ce | 97.36 | |
| 2izz_A | 322 | Pyrroline-5-carboxylate reductase 1; amino-acid bi | 97.35 | |
| 3doj_A | 310 | AT3G25530, dehydrogenase-like protein; gamma-hydro | 97.35 | |
| 2wtb_A | 725 | MFP2, fatty acid multifunctional protein (ATMFP2); | 97.35 | |
| 4e21_A | 358 | 6-phosphogluconate dehydrogenase (decarboxylating; | 97.33 | |
| 3hn2_A | 312 | 2-dehydropantoate 2-reductase; PSI-2, NYSGXRC, str | 97.31 | |
| 4ezb_A | 317 | Uncharacterized conserved protein; structural geno | 97.29 | |
| 2qyt_A | 317 | 2-dehydropantoate 2-reductase; APC81190, porphyrom | 97.28 | |
| 1lss_A | 140 | TRK system potassium uptake protein TRKA homolog; | 97.28 | |
| 3oj0_A | 144 | Glutr, glutamyl-tRNA reductase; structural genomic | 97.28 | |
| 2pv7_A | 298 | T-protein [includes: chorismate mutase (EC 5.4.99 | 97.28 | |
| 3ggo_A | 314 | Prephenate dehydrogenase; TYRA, HPP, NADH, alpha-b | 97.25 | |
| 4dll_A | 320 | 2-hydroxy-3-oxopropionate reductase; structural ge | 97.25 | |
| 3g0o_A | 303 | 3-hydroxyisobutyrate dehydrogenase; NAD(P), valine | 97.25 | |
| 1id1_A | 153 | Putative potassium channel protein; RCK domain, E. | 97.24 | |
| 4ina_A | 405 | Saccharopine dehydrogenase; structural genomics, P | 97.23 | |
| 3pdu_A | 287 | 3-hydroxyisobutyrate dehydrogenase family protein; | 97.23 | |
| 3b1f_A | 290 | Putative prephenate dehydrogenase; enzyme, 4-hydro | 97.23 | |
| 1vpd_A | 299 | Tartronate semialdehyde reductase; structural geno | 97.21 | |
| 3l9w_A | 413 | Glutathione-regulated potassium-efflux system Pro | 97.2 | |
| 2et6_A | 604 | (3R)-hydroxyacyl-COA dehydrogenase; MFE-2, beta-ox | 97.19 | |
| 1txg_A | 335 | Glycerol-3-phosphate dehydrogenase [NAD(P)+]; oxid | 97.18 | |
| 1ff9_A | 450 | Saccharopine reductase; lysine biosynthesis, alpha | 97.17 | |
| 3cky_A | 301 | 2-hydroxymethyl glutarate dehydrogenase; rossmann | 97.16 | |
| 2g1u_A | 155 | Hypothetical protein TM1088A; structural genomics, | 97.16 | |
| 2raf_A | 209 | Putative dinucleotide-binding oxidoreductase; NP_7 | 97.15 | |
| 4fgw_A | 391 | Glycerol-3-phosphate dehydrogenase [NAD(+)] 1; oxi | 97.15 | |
| 2ahr_A | 259 | Putative pyrroline carboxylate reductase; pyrrolin | 97.14 | |
| 2g5c_A | 281 | Prephenate dehydrogenase; TYRA, oxidoreductase; HE | 97.12 | |
| 2f1k_A | 279 | Prephenate dehydrogenase; tyrosine synthesis, X-RA | 97.11 | |
| 1wdk_A | 715 | Fatty oxidation complex alpha subunit; alpha2BETA2 | 97.11 | |
| 3ojo_A | 431 | CAP5O; rossmann fold, complex with cofactor NAD an | 97.11 | |
| 2vns_A | 215 | Metalloreductase steap3; metal-binding, transmembr | 97.09 | |
| 1zej_A | 293 | HBD-9, 3-hydroxyacyl-COA dehydrogenase; structural | 97.09 | |
| 2cvz_A | 289 | Dehydrogenase, 3-hydroxyisobutyrate dehydrogenase; | 97.08 | |
| 1dih_A | 273 | Dihydrodipicolinate reductase; oxidoreductase; HET | 97.08 | |
| 2zyd_A | 480 | 6-phosphogluconate dehydrogenase, decarboxylating; | 97.03 | |
| 3lt0_A | 329 | Enoyl-ACP reductase; triclosan, triclosan variant, | 97.03 | |
| 2uyy_A | 316 | N-PAC protein; long-chain dehydrogenase, cytokine; | 97.02 | |
| 3obb_A | 300 | Probable 3-hydroxyisobutyrate dehydrogenase; struc | 97.02 | |
| 3l6d_A | 306 | Putative oxidoreductase; structural genomics, prot | 97.01 | |
| 3gt0_A | 247 | Pyrroline-5-carboxylate reductase; structural geno | 97.0 | |
| 2iz1_A | 474 | 6-phosphogluconate dehydrogenase, decarboxylating; | 97.0 | |
| 1yb4_A | 295 | Tartronic semialdehyde reductase; structural genom | 96.99 | |
| 1ks9_A | 291 | KPA reductase;, 2-dehydropantoate 2-reductase; PAN | 96.98 | |
| 2nqt_A | 352 | N-acetyl-gamma-glutamyl-phosphate reductase; apopr | 96.97 | |
| 2uv8_A | 1887 | Fatty acid synthase subunit alpha (FAS2); fatty ac | 96.95 | |
| 3dr3_A | 337 | N-acetyl-gamma-glutamyl-phosphate reductase; csgid | 96.95 | |
| 2pff_A | 1688 | Fatty acid synthase subunit alpha, 3-oxoacyl-[acyl | 96.91 | |
| 3fwz_A | 140 | Inner membrane protein YBAL; TRKA-N domain, E.coli | 96.87 | |
| 2uv9_A | 1878 | Fatty acid synthase alpha subunits; fungal, dehydr | 96.86 | |
| 4gwg_A | 484 | 6-phosphogluconate dehydrogenase, decarboxylating; | 96.85 | |
| 2axq_A | 467 | Saccharopine dehydrogenase; rossmann fold variant, | 96.85 | |
| 1pgj_A | 478 | 6PGDH, 6-PGDH, 6-phosphogluconate dehydrogenase; o | 96.84 | |
| 3ego_A | 307 | Probable 2-dehydropantoate 2-reductase; structural | 96.71 | |
| 2pgd_A | 482 | 6-phosphogluconate dehydrogenase; oxidoreductase ( | 96.7 | |
| 3l4b_C | 218 | TRKA K+ channel protien TM1088B; potassium channel | 96.67 | |
| 4gbj_A | 297 | 6-phosphogluconate dehydrogenase NAD-binding; stru | 96.66 | |
| 1yqg_A | 263 | Pyrroline-5-carboxylate reductase; structural geno | 96.65 | |
| 1z82_A | 335 | Glycerol-3-phosphate dehydrogenase; TM0378, struct | 96.62 | |
| 2gf2_A | 296 | Hibadh, 3-hydroxyisobutyrate dehydrogenase; struct | 96.61 | |
| 1np3_A | 338 | Ketol-acid reductoisomerase; A DEEP figure-OF-eigh | 96.61 | |
| 3c7a_A | 404 | Octopine dehydrogenase; L) stereospecific opine de | 96.6 | |
| 2ozp_A | 345 | N-acetyl-gamma-glutamyl-phosphate reductase; amino | 96.59 | |
| 3ktd_A | 341 | Prephenate dehydrogenase; structural genomics, joi | 96.54 | |
| 2p4q_A | 497 | 6-phosphogluconate dehydrogenase, decarboxylating; | 96.5 | |
| 4f3y_A | 272 | DHPR, dihydrodipicolinate reductase; structural ge | 96.31 | |
| 1xyg_A | 359 | Putative N-acetyl-gamma-glutamyl-phosphate reduct; | 96.26 | |
| 2hjs_A | 340 | USG-1 protein homolog; aspartate-semialdehyde dehy | 96.25 | |
| 2z2v_A | 365 | Hypothetical protein PH1688; L-lysine dehydrogenas | 96.24 | |
| 2gk4_A | 232 | Conserved hypothetical protein; alpha-beta-alpha s | 96.23 | |
| 2i99_A | 312 | MU-crystallin homolog; thyroid hormine binding pro | 96.22 | |
| 3g17_A | 294 | Similar to 2-dehydropantoate 2-reductase; structur | 96.18 | |
| 1i36_A | 264 | Conserved hypothetical protein MTH1747; NADP bindi | 96.15 | |
| 4g65_A | 461 | TRK system potassium uptake protein TRKA; structur | 96.11 | |
| 3q2i_A | 354 | Dehydrogenase; rossmann fold, UDP-sugar binding, N | 96.08 | |
| 2eez_A | 369 | Alanine dehydrogenase; TTHA0216, structural genomi | 96.06 | |
| 3ijp_A | 288 | DHPR, dihydrodipicolinate reductase; ssgcid, SBRI, | 96.05 | |
| 3e9m_A | 330 | Oxidoreductase, GFO/IDH/MOCA family; GFO/LDH/MOCA, | 96.04 | |
| 3pwk_A | 366 | Aspartate-semialdehyde dehydrogenase; NADP binding | 95.96 | |
| 2ep5_A | 350 | 350AA long hypothetical aspartate-semialdehyde deh | 95.95 | |
| 1vkn_A | 351 | N-acetyl-gamma-glutamyl-phosphate reductase; TM178 | 95.95 | |
| 3ba1_A | 333 | HPPR, hydroxyphenylpyruvate reductase; two domain | 95.93 | |
| 2hk9_A | 275 | Shikimate dehydrogenase; shikimate pathway, drug d | 95.91 | |
| 3jyo_A | 283 | Quinate/shikimate dehydrogenase; enzyme-cofactor c | 95.9 | |
| 3euw_A | 344 | MYO-inositol dehydrogenase; protein structure init | 95.84 | |
| 1t4b_A | 367 | Aspartate-semialdehyde dehydrogenase; asadh, HOSR, | 95.77 | |
| 4dpk_A | 359 | Malonyl-COA/succinyl-COA reductase; dinucleotide b | 95.75 | |
| 4dpl_A | 359 | Malonyl-COA/succinyl-COA reductase; dinucleotide b | 95.75 | |
| 3slk_A | 795 | Polyketide synthase extender module 2; rossmann fo | 95.74 | |
| 1jw9_B | 249 | Molybdopterin biosynthesis MOEB protein; MOEB: mod | 95.71 | |
| 1x7d_A | 350 | Ornithine cyclodeaminase; binds NAD+, binds L-orni | 95.62 | |
| 3evn_A | 329 | Oxidoreductase, GFO/IDH/MOCA family; structural ge | 95.62 | |
| 2r00_A | 336 | Aspartate-semialdehyde dehydrogenase; conformation | 95.6 | |
| 2egg_A | 297 | AROE, shikimate 5-dehydrogenase; dimer, X-RAY diff | 95.6 | |
| 3rc1_A | 350 | Sugar 3-ketoreductase; sugar biosynthesis, TDP bin | 95.58 | |
| 3gvx_A | 290 | Glycerate dehydrogenase related protein; NYSGXRC, | 95.52 | |
| 1u7z_A | 226 | Coenzyme A biosynthesis bifunctional protein coabc | 95.51 | |
| 3p2o_A | 285 | Bifunctional protein fold; structural genomics, ce | 95.5 | |
| 4dgs_A | 340 | Dehydrogenase; structural genomics, PSI-biology, N | 95.48 | |
| 1tlt_A | 319 | Putative oxidoreductase (virulence factor MVIM HO; | 95.41 | |
| 3qy9_A | 243 | DHPR, dihydrodipicolinate reductase; rossmann fold | 95.39 | |
| 2dbq_A | 334 | Glyoxylate reductase; D-3-phosphoglycerate dehydro | 95.36 | |
| 3m2t_A | 359 | Probable dehydrogenase; PSI, SGXNY, structural gen | 95.34 | |
| 2rir_A | 300 | Dipicolinate synthase, A chain; structural genomic | 95.34 | |
| 3hdj_A | 313 | Probable ornithine cyclodeaminase; APC62486, borde | 95.31 | |
| 2d0i_A | 333 | Dehydrogenase; structural genomics, NPPSFA, nation | 95.31 | |
| 1omo_A | 322 | Alanine dehydrogenase; two-domain, beta-sandwich-d | 95.3 | |
| 2vhw_A | 377 | Alanine dehydrogenase; NAD, secreted, oxidoreducta | 95.27 |
| >7mdh_A Protein (malate dehydrogenase); chloroplastic malate dehydrogenase (NADP+), activated by LIG chloroplastic malate dehydrogenase; 2.40A {Sorghum bicolor} SCOP: c.2.1.5 d.162.1.1 PDB: 1civ_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.7e-68 Score=495.79 Aligned_cols=325 Identities=42% Similarity=0.663 Sum_probs=294.0
Q ss_pred CCCcEEEEEcCCChhHHHHHHHHHhcccCCCCCCeEEEEEecccchhhhhhhHhhhhhhccCCccceEEeCCHHHHhCCC
Q 019990 3 KNPLRVLVTGAAGQIGYALVPMIARGIMLGPDQPVILHMLDIEPAAEALNGVKMELIDAAFPLLKGVVATTDVVEACKDV 82 (332)
Q Consensus 3 ~~~~kI~VtGaaG~IGs~l~~~L~~~~~~~~~~~~~i~l~D~~~~~~~~~~~~~dl~~~~~~~~~~v~~~~~~~~a~~~a 82 (332)
++++||+||||+|+||+++++.|+.+++++.+.+..++++|+..++++++|.++||+|+.+++..++....+.+++++||
T Consensus 30 ~~~~KV~ViGAaG~VG~~la~~l~~~~l~~e~~~l~L~d~d~~~~~~~~~G~amDL~h~~~p~~~~v~i~~~~y~~~~da 109 (375)
T 7mdh_A 30 KKLVNIAVSGAAGMISNHLLFKLASGEVFGQDQPIALKLLGSERSFQALEGVAMELEDSLYPLLREVSIGIDPYEVFEDV 109 (375)
T ss_dssp CCCEEEEEETTTSHHHHHHHHHHHHTTTTCTTCCEEEEEECCGGGHHHHHHHHHHHHTTTCTTEEEEEEESCHHHHTTTC
T ss_pred CCCCEEEEECCCChHHHHHHHHHHcCCcCCCCceeEEEecCccchhhhhHHHHHhHHhhhhhhcCCcEEecCCHHHhCCC
Confidence 35789999999999999999999999988754444566666655556789999999999877666777777889999999
Q ss_pred cEEEEecCCCCCCCCChhHHHhhhHHHHHHHHHHHHhhcCCCcEEEEEeCChhhHHHHHHHHCCCCCCCcEEEeecccHH
Q 019990 83 NIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEKHAAPNCKVLVVANPANTNALILKEFAPSIPAKNITCLTRLDHN 162 (332)
Q Consensus 83 DiVi~~ag~~~~~~~~~~~~~~~N~~~~~~i~~~i~~~~~~~~~viv~snp~~~~~~~~~~~~~~~~~~~i~~~t~l~~~ 162 (332)
|+||++||.||++|++|.|++..|+++++++++++.+++.|+++++++|||+|++++++++.++.+|+++|+++|.||+.
T Consensus 110 DvVVitag~prkpG~tR~DLl~~N~~I~k~i~~~i~~~a~p~~ivlVvsNPvD~~t~ia~k~sg~~~~rvig~gT~LDsa 189 (375)
T 7mdh_A 110 DWALLIGAKPRGPGMERAALLDINGQIFADQGKALNAVASKNVKVLVVGNPCNTNALICLKNAPDIPAKNFHALTRLDEN 189 (375)
T ss_dssp SEEEECCCCCCCTTCCHHHHHHHHHHHHHHHHHHHHHHSCTTCEEEECSSSHHHHHHHHHHTCTTSCGGGEEECCHHHHH
T ss_pred CEEEEcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhcCCCeEEEEecCchhHHHHHHHHHcCCCCccEEEeeehHHHH
Confidence 99999999999999999999999999999999999998448999999999999999999997444566669999999999
Q ss_pred HHHHHHHHHcCCCCCCeeeeEEEecCCCceeecccCcccccCCCCcchhhhccccccchhHHHHHHHhhHHHHHHhcCCc
Q 019990 163 RAMGQISERLKVHVSDVKNVIIWGNHSSTQYPDVNHATVTTSKGEKPVREAVADDNWLNTEFITTVQQRGAAIIKARKLS 242 (332)
Q Consensus 163 r~~~~~a~~~~v~~~~v~~~~V~G~hg~~~v~~~s~~~v~~~~~~~p~~~~~~~~~~~~~~~~~~v~~~~~~i~~~~g~~ 242 (332)
|+++++|+++|++|.+|+.++|||+||+++||+||++++ +|+|+.+++.+++|..++|.+++++++++|++.||.|
T Consensus 190 R~r~~lA~~lgv~~~~V~~v~V~GeHgdt~vp~~S~a~V----~G~pl~~~~~~~~~~~~~i~~~v~~~g~eII~~kG~t 265 (375)
T 7mdh_A 190 RAKCQLALKAGVFYDKVSNVTIWGNHSTTQVPDFLNAKI----DGRPVKEVIKRTKWLEEEFTITVQKRGGALIQKWGRS 265 (375)
T ss_dssp HHHHHHHHHTTSCGGGEECCEEEBCSSTTCEEECSSCEE----TTEEGGGTCCCHHHHHHHHHHHHHTHHHHHHHHTSSC
T ss_pred HHHHHHHHHhCcChhhcccceEEecCCCceeeeeecccC----CCEEhhHhccchhhHHHHHHHHHHHHHHHHHHhcCCC
Confidence 999999999999999999766799999999999999999 9999999998878888899999999999999999999
Q ss_pred chHHHHHHHHHHHHHHHcCCCCCcEEEEEEeecC-CCCCCCCeEEEEeEEEe-CCeEEEecCCCCCHHHHHHHHHHHHHH
Q 019990 243 SALSAASSACDHIRDWVLGTPKGTWVSMGVYSDG-SYGIPEGLIYSFPVTCE-KGEWSIVKGLKVDEFSRAKMDATAEEL 320 (332)
Q Consensus 243 ~~~~~a~a~~~~i~~~~~~~~~~~i~~~~v~~~g-~yg~~~~~~~s~Pv~~~-~G~~~~~~~~~l~~~E~~~l~~s~~~i 320 (332)
++.+++.++++.|.+|+.|.|+++|+|+|++++| +||+++++|||+||++| +|+++++++++|+++|+++|++|+++|
T Consensus 266 s~a~aa~~i~~~i~~~l~g~d~~~v~~vs~~~~G~~YGi~~dv~~s~P~vlg~~Gv~~iv~~l~L~~~E~~~l~~Sa~~L 345 (375)
T 7mdh_A 266 SAASTAVSIADAIKSLVTPTPEGDWFSTGVYTTGNPYGIAEDIVFSMPCRSKGDGDYELATDVSNDDFLWERIKKSEAEL 345 (375)
T ss_dssp CHHHHHHHHHHHHHHHHSCCCTTCCEEEEEECTTCSSCCCSSSEEEEEEECCSSSCCEECCCCCCCHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHhcCCCCCeEEEEEEEeCCccCCCCCceEEEEEEEEcCCeeEEecCCCCCCHHHHHHHHHHHHHH
Confidence 9877788899999999987677899999999999 79998899999999999 999999966999999999999999999
Q ss_pred HHHHHHHhhhh
Q 019990 321 AEEKTLAYSCL 331 (332)
Q Consensus 321 ~~~~~~~~~~~ 331 (332)
+++.+.+...|
T Consensus 346 ~~e~~~~~~~~ 356 (375)
T 7mdh_A 346 LAEKKCVAHLT 356 (375)
T ss_dssp HHHHHHTHHHH
T ss_pred HHHHHHHHHHH
Confidence 99999887665
|
| >5mdh_A Malate dehydrogenase; oxidoreductase, (NAD(A)-CHOH(D)); HET: NAD; 2.40A {Sus scrofa} SCOP: c.2.1.5 d.162.1.1 PDB: 4mdh_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.4e-67 Score=486.98 Aligned_cols=326 Identities=61% Similarity=0.956 Sum_probs=293.1
Q ss_pred CCCcEEEEEcCCChhHHHHHHHHHhcccCCCCCCeEEEEEecccchhhhhhhHhhhhhhccCCccceEEeCCHHHHhCCC
Q 019990 3 KNPLRVLVTGAAGQIGYALVPMIARGIMLGPDQPVILHMLDIEPAAEALNGVKMELIDAAFPLLKGVVATTDVVEACKDV 82 (332)
Q Consensus 3 ~~~~kI~VtGaaG~IGs~l~~~L~~~~~~~~~~~~~i~l~D~~~~~~~~~~~~~dl~~~~~~~~~~v~~~~~~~~a~~~a 82 (332)
++++||+||||+|+||+++++.|+.+++++.+++.+++|+|++...++++|.++||.|+.+++..++....+.+++++||
T Consensus 1 ~~~~kV~V~GaaG~VG~~la~~L~~~~~~~e~~~~~l~L~Di~~~~~~~~g~a~DL~~~~~~~~~~~~~~~~~~~~~~da 80 (333)
T 5mdh_A 1 SEPIRVLVTGAAGQIAYSLLYSIGNGSVFGKDQPIILVLLDITPMMGVLDGVLMELQDCALPLLKDVIATDKEEIAFKDL 80 (333)
T ss_dssp CCCEEEEESSTTSHHHHTTHHHHHTTTTTCTTCCEEEEEECCGGGHHHHHHHHHHHHHTCCTTEEEEEEESCHHHHTTTC
T ss_pred CCCeEEEEECCCCHHHHHHHHHHHhCCCccccCCCEEEEEeCCCccccchhhHhhhHhhhhcccCCEEEcCCcHHHhCCC
Confidence 35789999999999999999999999888766666799999975446789999999998766666777778889999999
Q ss_pred cEEEEecCCCCCCCCChhHHHhhhHHHHHHHHHHHHhhcCCCc-EEEEEeCChhhHHHHHHHHCCCCCCCcEEEeecccH
Q 019990 83 NIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEKHAAPNC-KVLVVANPANTNALILKEFAPSIPAKNITCLTRLDH 161 (332)
Q Consensus 83 DiVi~~ag~~~~~~~~~~~~~~~N~~~~~~i~~~i~~~~~~~~-~viv~snp~~~~~~~~~~~~~~~~~~~i~~~t~l~~ 161 (332)
|+|||+||.|+++|++|.++++.|+++++++++++++++ |++ +++++|||+|.+++++++++..+|+++|+++|.||+
T Consensus 81 DvVvitAg~prkpG~tR~dll~~N~~i~~~i~~~i~~~~-~~~~~vivvsNPvd~~t~~~~~~~~~~p~~~ig~~t~LDs 159 (333)
T 5mdh_A 81 DVAILVGSMPRRDGMERKDLLKANVKIFKCQGAALDKYA-KKSVKVIVVGNPANTNCLTASKSAPSIPKENFSCLTRLDH 159 (333)
T ss_dssp SEEEECCSCCCCTTCCTTTTHHHHHHHHHHHHHHHHHHS-CTTCEEEECSSSHHHHHHHHHHTCTTSCGGGEEECCHHHH
T ss_pred CEEEEeCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhC-CCCeEEEEcCCchHHHHHHHHHHcCCCCcCEEEEEEhHHH
Confidence 999999999999999999999999999999999999998 665 799999999999999999733466667889999999
Q ss_pred HHHHHHHHHHcCCCCCCeeeeEEEecCCCceeecccCcccccCCCCcch--hhhccccccchhHHHHHHHhhHHHHHHhc
Q 019990 162 NRAMGQISERLKVHVSDVKNVIIWGNHSSTQYPDVNHATVTTSKGEKPV--REAVADDNWLNTEFITTVQQRGAAIIKAR 239 (332)
Q Consensus 162 ~r~~~~~a~~~~v~~~~v~~~~V~G~hg~~~v~~~s~~~v~~~~~~~p~--~~~~~~~~~~~~~~~~~v~~~~~~i~~~~ 239 (332)
.|+++++|+++|++|.+|++++|||+||+++||+||+++++. +|+|+ .+++.+++|..+++.+++++++++|++.|
T Consensus 160 ~R~~~~la~~l~v~~~~v~~~vV~GeHgds~vp~~S~a~v~i--~g~~~~~~~~~~~~~~~~~~~~~~v~~~g~eIi~~k 237 (333)
T 5mdh_A 160 NRAKAQIALKLGVTSDDVKNVIIWGNHSSTQYPDVNHAKVKL--QAKEVGVYEAVKDDSWLKGEFITTVQQRGAAVIKAR 237 (333)
T ss_dssp HHHHHHHHHHHTCCGGGEECCEEEBCSSTTCEEECTTCEEEC--SSCEEEHHHHHCCHHHHHTHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCcCHHHeeecEEEEcCCCCEEEeeeccEecc--CCeeccHHHhhccccccHHHHHHHHHHHHHHHHHcc
Confidence 999999999999999999998779999999999999997511 57754 57787778888899999999999999999
Q ss_pred CCcchHHHHHHHHHHHHHHHcCCCCCcEEEEEEeecC-CCCCCCCeEEEEeEEEeCCeEEEecCCCCCHHHHHHHHHHHH
Q 019990 240 KLSSALSAASSACDHIRDWVLGTPKGTWVSMGVYSDG-SYGIPEGLIYSFPVTCEKGEWSIVKGLKVDEFSRAKMDATAE 318 (332)
Q Consensus 240 g~~~~~~~a~a~~~~i~~~~~~~~~~~i~~~~v~~~g-~yg~~~~~~~s~Pv~~~~G~~~~~~~~~l~~~E~~~l~~s~~ 318 (332)
|.++.+++|.++++++.+|+.++++++|+|+|++++| +||+++++|||+||++.+|+++++++++||++|+++|++|++
T Consensus 238 ~~ssa~~~a~~~~~~~~~il~~~~~~~v~~~s~~~~G~~YGi~~~v~~s~P~~~~~Gv~~iv~~l~L~~~E~~~l~~sa~ 317 (333)
T 5mdh_A 238 KLSSAMSAAKAICDHVRDIWFGTPEGEFVSMGIISDGNSYGVPDDLLYSFPVTIKDKTWKIVEGLPINDFSREKMDLTAK 317 (333)
T ss_dssp SSCCCHHHHHHHHHHHHHHHHCCCTTCCEEEEEECTTCSSSCCSSCEEEEEEEEETTEEEECCCCCCCHHHHHHHHHHHH
T ss_pred CchHHHHHHHHHHHHHHHHhcCCCCCeEEEEEEecCCcccCCCCCeEEEEEEEEcCCeEEEcCCCCCCHHHHHHHHHHHH
Confidence 8887888889999999999997545789999999999 999988999999999999999999669999999999999999
Q ss_pred HHHHHHHHHhhhh
Q 019990 319 ELAEEKTLAYSCL 331 (332)
Q Consensus 319 ~i~~~~~~~~~~~ 331 (332)
+|+++++++++||
T Consensus 318 ~L~~~~~~~~~~l 330 (333)
T 5mdh_A 318 ELAEEKETAFEFL 330 (333)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 9999999999987
|
| >4h7p_A Malate dehydrogenase; ssgcid, structural G seattle structural genomics center for infectious disease, oxidoreductase; 1.30A {Leishmania major} | Back alignment and structure |
|---|
Probab=100.00 E-value=3e-66 Score=478.26 Aligned_cols=319 Identities=55% Similarity=0.907 Sum_probs=282.2
Q ss_pred CCcEEEEEcCCChhHHHHHHHHHhcccCCCCCCeEEEEEecccchhhhhhhHhhhhhhccCCccceEEeCCHHHHhCCCc
Q 019990 4 NPLRVLVTGAAGQIGYALVPMIARGIMLGPDQPVILHMLDIEPAAEALNGVKMELIDAAFPLLKGVVATTDVVEACKDVN 83 (332)
Q Consensus 4 ~~~kI~VtGaaG~IGs~l~~~L~~~~~~~~~~~~~i~l~D~~~~~~~~~~~~~dl~~~~~~~~~~v~~~~~~~~a~~~aD 83 (332)
.+.||+|+||+|.||++|+++|+++.+++.+...+++|+|+.+..+.++|..+||+|+.++....+...++.+++++|||
T Consensus 23 ~~vKVaViGAaG~IG~~la~~la~~~l~~~~~~~eL~L~Di~~~~~~~~Gva~DL~~~~~~~~~~~~~~~~~~~a~~~ad 102 (345)
T 4h7p_A 23 SAVKVAVTGAAGQIGYALVPLIARGALLGPTTPVELRLLDIEPALKALAGVEAELEDCAFPLLDKVVVTADPRVAFDGVA 102 (345)
T ss_dssp CCEEEEEESTTSHHHHHHHHHHHHTTTTCTTCCEEEEEECCGGGHHHHHHHHHHHHHTTCTTEEEEEEESCHHHHTTTCS
T ss_pred CCCEEEEECcCcHHHHHHHHHHHhccccCCCCccEEEEECCCCccccchhhhhhhhhcCccCCCcEEEcCChHHHhCCCC
Confidence 45699999999999999999999998888777779999999766567789999999998887777777888999999999
Q ss_pred EEEEecCCCCCCCCChhHHHhhhHHHHHHHHHHHHhhcCCCcEEEEEeCChhhHHHHHHHHCCCCC-CCcEEEeecccHH
Q 019990 84 IAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEKHAAPNCKVLVVANPANTNALILKEFAPSIP-AKNITCLTRLDHN 162 (332)
Q Consensus 84 iVi~~ag~~~~~~~~~~~~~~~N~~~~~~i~~~i~~~~~~~~~viv~snp~~~~~~~~~~~~~~~~-~~~i~~~t~l~~~ 162 (332)
+||++||.||++|++|.|++..|+++++++++.+.++++|+++++++|||+|++++++++..++++ +++|+++|.||+.
T Consensus 103 vVvi~aG~prkpGmtR~DLl~~Na~I~~~~~~~i~~~a~~~~~vlvvsNPvd~~~~i~~~~~~g~~~~r~i~~~t~LDs~ 182 (345)
T 4h7p_A 103 IAIMCGAFPRKAGMERKDLLEMNARIFKEQGEAIAAVAASDCRVVVVGNPANTNALILLKSAQGKLNPRHVTAMTRLDHN 182 (345)
T ss_dssp EEEECCCCCCCTTCCHHHHHHHHHHHHHHHHHHHHHHSCTTCEEEECSSSHHHHHHHHHHHTTTCSCGGGEEECCHHHHH
T ss_pred EEEECCCCCCCCCCCHHHHHHHhHHHHHHHHHHHHhhccCceEEEEeCCCcchHHHHHHHHccCCCCcceeeeccchhHH
Confidence 999999999999999999999999999999999999987889999999999999999888656654 4569999999999
Q ss_pred HHHHHHHHHcCCCCCCeeeeEEEecCCCceeecccCcccccCCCCcchhhhccccccchhHHHHHHHhhHHHHHHhcCCc
Q 019990 163 RAMGQISERLKVHVSDVKNVIIWGNHSSTQYPDVNHATVTTSKGEKPVREAVADDNWLNTEFITTVQQRGAAIIKARKLS 242 (332)
Q Consensus 163 r~~~~~a~~~~v~~~~v~~~~V~G~hg~~~v~~~s~~~v~~~~~~~p~~~~~~~~~~~~~~~~~~v~~~~~~i~~~~g~~ 242 (332)
|+++++|+++|++|.+|+.++|||+||++++|+||++++ +|+|+.+++.++ |..+++.+++++++++|++.||.+
T Consensus 183 R~~~~la~~~~v~~~~V~~~~V~G~HG~t~vp~~s~a~v----~g~~~~~~~~~~-~~~~~~~~~v~~~g~eIi~~kg~s 257 (345)
T 4h7p_A 183 RALSLLARKAGVPVSQVRNVIIWGNHSSTQVPDTDSAVI----GTTPAREAIKDD-ALDDDFVQVVRGRGAEIIQLRGLS 257 (345)
T ss_dssp HHHHHHHHHHTSCGGGEECCEEEBCSSTTCEEECTTCEE----TTEEGGGGCCC-------HHHHHHHHHHHHHHHHSSC
T ss_pred HHHHHHHHHHCcChhheecceeecCCCCeEEeeeccceE----CCccHHHhcchh-hHHHHHHHHHHhhhhhhhhcCCCc
Confidence 999999999999999999888899999999999999999 999999988664 556789999999999999999998
Q ss_pred chHHHHHHHHHHHHHHHcCCCCCcEEEEEEee-cCCCCCCCCeEEEEeEEEeCCeEEEecCCCCCHHHHHHHHHHHHHHH
Q 019990 243 SALSAASSACDHIRDWVLGTPKGTWVSMGVYS-DGSYGIPEGLIYSFPVTCEKGEWSIVKGLKVDEFSRAKMDATAEELA 321 (332)
Q Consensus 243 ~~~~~a~a~~~~i~~~~~~~~~~~i~~~~v~~-~g~yg~~~~~~~s~Pv~~~~G~~~~~~~~~l~~~E~~~l~~s~~~i~ 321 (332)
+++++|+++++++.+|+.+.++..++++++++ +|+||+|+++|||+||++++|+|++++.++|+++|+++|++|+++|+
T Consensus 258 s~~s~a~a~~~~~~~~l~~~~~~~~vs~~v~s~~g~YGi~~~v~~s~Pv~~~~G~~~iv~~l~l~~~e~~~l~~s~~~L~ 337 (345)
T 4h7p_A 258 SAMSAAKAAVDHVHDWIHGTPEGVYVSMGVYSDENPYGVPSGLIFSFPCTCHAGEWTVVSGKLNGDLGKQRLASTIAELQ 337 (345)
T ss_dssp CCHHHHHHHHHHHHHHHHCCCTTCCEEEEEECTTCTTCCCSSCEEEEEEEEETTEEEECCSCC-----CGGGHHHHHHHH
T ss_pred chhhHHHHHHHHHHHHhcCCCCceEEEEEEEeCCCCcCCCCCEEEEEEEEEeCCEEEEeCCCCCCHHHHHHHHHHHHHHH
Confidence 88999999999999999987666777777877 59999999999999999999999999889999999999999999999
Q ss_pred HHHHHH
Q 019990 322 EEKTLA 327 (332)
Q Consensus 322 ~~~~~~ 327 (332)
++.+.+
T Consensus 338 ~E~~~A 343 (345)
T 4h7p_A 338 EERAQA 343 (345)
T ss_dssp HHHHHT
T ss_pred HHHHHc
Confidence 987653
|
| >1b8p_A Protein (malate dehydrogenase); oxidoreductase; 1.90A {Aquaspirillum arcticum} SCOP: c.2.1.5 d.162.1.1 PDB: 1b8u_A* 1b8v_A* 3d5t_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.1e-62 Score=456.05 Aligned_cols=326 Identities=53% Similarity=0.846 Sum_probs=292.4
Q ss_pred CCCCCcEEEEEcCCChhHHHHHHHHHhcccCCCCCCeEEEEEecc--cchhhhhhhHhhhhhhccCCccceEEeCCHHHH
Q 019990 1 MAKNPLRVLVTGAAGQIGYALVPMIARGIMLGPDQPVILHMLDIE--PAAEALNGVKMELIDAAFPLLKGVVATTDVVEA 78 (332)
Q Consensus 1 m~~~~~kI~VtGaaG~IGs~l~~~L~~~~~~~~~~~~~i~l~D~~--~~~~~~~~~~~dl~~~~~~~~~~v~~~~~~~~a 78 (332)
|+++++||+||||+||||++++..|+..++++.+...+|+|+|++ ...+++.+.++|+.|..++...++..+.+++++
T Consensus 1 m~~~~~KI~ViGaaG~VG~~l~~~L~~~~~~~~~~~~ev~l~Di~~~~~~~~~~g~~~dl~~~~~~~~~~i~~~~~~~~a 80 (329)
T 1b8p_A 1 MAKTPMRVAVTGAAGQICYSLLFRIANGDMLGKDQPVILQLLEIPNEKAQKALQGVMMEIDDCAFPLLAGMTAHADPMTA 80 (329)
T ss_dssp --CCCEEEEESSTTSHHHHHHHHHHHTTTTTCTTCCEEEEEECCSCHHHHHHHHHHHHHHHTTTCTTEEEEEEESSHHHH
T ss_pred CCCCCCEEEEECCCChHHHHHHHHHHhCCCcCCCCCCEEEEEcCCCccccccchhhHHHHhhhcccccCcEEEecCcHHH
Confidence 767789999999889999999999998887654444589999986 113467788999998654455678878889999
Q ss_pred hCCCcEEEEecCCCCCCCCChhHHHhhhHHHHHHHHHHHHhhcCCCcEEEEEeCChhhHHHHHHHHCCCCCCCcEEEeec
Q 019990 79 CKDVNIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEKHAAPNCKVLVVANPANTNALILKEFAPSIPAKNITCLTR 158 (332)
Q Consensus 79 ~~~aDiVi~~ag~~~~~~~~~~~~~~~N~~~~~~i~~~i~~~~~~~~~viv~snp~~~~~~~~~~~~~~~~~~~i~~~t~ 158 (332)
+++||+|||+||.+++++++|.+++..|+++++++++++++++.|+++++++|||++.+++++++...++|+++++|+|.
T Consensus 81 l~~aD~Vi~~ag~~~~~g~~r~dl~~~N~~i~~~i~~~i~~~~~p~a~ii~~SNPv~~~t~~~~~~~~~~p~~~v~g~t~ 160 (329)
T 1b8p_A 81 FKDADVALLVGARPRGPGMERKDLLEANAQIFTVQGKAIDAVASRNIKVLVVGNPANTNAYIAMKSAPSLPAKNFTAMLR 160 (329)
T ss_dssp TTTCSEEEECCCCCCCTTCCHHHHHHHHHHHHHHHHHHHHHHSCTTCEEEECSSSHHHHHHHHHHTCTTSCGGGEEECCH
T ss_pred hCCCCEEEEeCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhcCCCeEEEEccCchHHHHHHHHHHcCCCCHHHEEEeec
Confidence 99999999999999999999999999999999999999999954789999999999999999999744899999999999
Q ss_pred ccHHHHHHHHHHHcCCCCCCeeeeEEEecCCCceeecccCcccccCCCCcchhhhccccccchhHHHHHHHhhHHHHHHh
Q 019990 159 LDHNRAMGQISERLKVHVSDVKNVIIWGNHSSTQYPDVNHATVTTSKGEKPVREAVADDNWLNTEFITTVQQRGAAIIKA 238 (332)
Q Consensus 159 l~~~r~~~~~a~~~~v~~~~v~~~~V~G~hg~~~v~~~s~~~v~~~~~~~p~~~~~~~~~~~~~~~~~~v~~~~~~i~~~ 238 (332)
+|+.|+++++|+++|+++.+|+.++|||+||++++|+||++++ +|+|+.+++.++.|..+++.+++++++++|++.
T Consensus 161 Ld~~r~~~~la~~lgv~~~~v~~~~v~G~Hg~s~~p~~s~~~v----~g~~~~~~~~~~~~~~~~i~~~v~~~g~eii~~ 236 (329)
T 1b8p_A 161 LDHNRALSQIAAKTGKPVSSIEKLFVWGNHSPTMYADYRYAQI----DGASVKDMINDDAWNRDTFLPTVGKRGAAIIDA 236 (329)
T ss_dssp HHHHHHHHHHHHHHTCCGGGEESCEEEBCSSTTCEEECSSCEE----TTEEHHHHHCCHHHHHHTHHHHHHTHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCcCHHHceEEEEEeccCCcEeeehHHCeE----CCeeHHHHhccchhhHHHHHHHHHHHHHhhhhc
Confidence 9999999999999999999999777899999999999999999 999999988766777789999999999999999
Q ss_pred cCCcchHHHHHHHHHHHHHHHcCCCCCcEEEEEEeecCCCCCCCCeEEEEeEEEeCCeEEEecCCCCCHHHHHHHHHHHH
Q 019990 239 RKLSSALSAASSACDHIRDWVLGTPKGTWVSMGVYSDGSYGIPEGLIYSFPVTCEKGEWSIVKGLKVDEFSRAKMDATAE 318 (332)
Q Consensus 239 ~g~~~~~~~a~a~~~~i~~~~~~~~~~~i~~~~v~~~g~yg~~~~~~~s~Pv~~~~G~~~~~~~~~l~~~E~~~l~~s~~ 318 (332)
||+++++++|+++++++.+|+.++ +++++|++++++|+||+|+++|||+||++.+|+++++++++|+++|+++|++|++
T Consensus 237 kg~~~~~~~a~a~~~~~~ai~~~~-~~~~~~~s~~~~g~yg~~~~~~~s~P~~i~~Gv~~i~~~~~l~~~e~~~l~~s~~ 315 (329)
T 1b8p_A 237 RGVSSAASAANAAIDHIHDWVLGT-AGKWTTMGIPSDGSYGIPEGVIFGFPVTTENGEYKIVQGLSIDAFSQERINVTLN 315 (329)
T ss_dssp HSSCCHHHHHHHHHHHHHHHHHCC-TTCCEEEEEECCSGGGCCTTCEEEEEEEEETTEEEECCCCCCCHHHHHHHHHHHH
T ss_pred cCCChHHHHHHHHHHHHHHHhcCC-CCcEEEEEEEecCccCCCCCeEEEEEEEEcCCEEEecCCCCCCHHHHHHHHHHHH
Confidence 999988888888999999988862 6889999999999999999999999999999999999558999999999999999
Q ss_pred HHHHHHHHHhhhh
Q 019990 319 ELAEEKTLAYSCL 331 (332)
Q Consensus 319 ~i~~~~~~~~~~~ 331 (332)
.|++.++.+.++|
T Consensus 316 ~l~~~~~~~~~~~ 328 (329)
T 1b8p_A 316 ELLEEQNGVQHLL 328 (329)
T ss_dssp HHHHHHHHHGGGG
T ss_pred HHHHHHHHHHHhh
Confidence 9999999999887
|
| >3pqe_A L-LDH, L-lactate dehydrogenase; FBP, oxidoreductase; 2.20A {Bacillus subtilis} PDB: 3pqf_A* 3pqd_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=6.7e-63 Score=454.20 Aligned_cols=306 Identities=23% Similarity=0.308 Sum_probs=275.0
Q ss_pred CCCCCcEEEEEcCCChhHHHHHHHHHhcccCCCCCCeEEEEEecccchhhhhhhHhhhhhhccCCc-cceEEeCCHHHHh
Q 019990 1 MAKNPLRVLVTGAAGQIGYALVPMIARGIMLGPDQPVILHMLDIEPAAEALNGVKMELIDAAFPLL-KGVVATTDVVEAC 79 (332)
Q Consensus 1 m~~~~~kI~VtGaaG~IGs~l~~~L~~~~~~~~~~~~~i~l~D~~~~~~~~~~~~~dl~~~~~~~~-~~v~~~~~~~~a~ 79 (332)
|+++++||+|+| +|.||++++..|+..++++ +++|+|++. +++++.++||.|. .+.. .++...++.++++
T Consensus 1 m~~~~~kI~ViG-aG~vG~~~a~~l~~~~~~~-----~l~l~D~~~--~k~~g~a~DL~~~-~~~~~~~v~i~~~~~~a~ 71 (326)
T 3pqe_A 1 MNKHVNKVALIG-AGFVGSSYAFALINQGITD-----ELVVIDVNK--EKAMGDVMDLNHG-KAFAPQPVKTSYGTYEDC 71 (326)
T ss_dssp -CCSCCEEEEEC-CSHHHHHHHHHHHHHTCCS-----EEEEECSCH--HHHHHHHHHHHHT-GGGSSSCCEEEEECGGGG
T ss_pred CCCCCCEEEEEC-CCHHHHHHHHHHHhCCCCc-----eEEEEecch--HHHHHHHHHHHhc-cccccCCeEEEeCcHHHh
Confidence 878899999999 5999999999999888754 899999953 5789999999997 4433 3444444456889
Q ss_pred CCCcEEEEecCCCCCCCCChhHHHhhhHHHHHHHHHHHHhhcCCCcEEEEEeCChhhHHHHHHHHCCCCCCCcEEE-eec
Q 019990 80 KDVNIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEKHAAPNCKVLVVANPANTNALILKEFAPSIPAKNITC-LTR 158 (332)
Q Consensus 80 ~~aDiVi~~ag~~~~~~~~~~~~~~~N~~~~~~i~~~i~~~~~~~~~viv~snp~~~~~~~~~~~~~~~~~~~i~~-~t~ 158 (332)
++||+||+++|.|+++|++|.+++..|+++++++++.+.+++ |+++++++|||+|.+++++++. +++|++|++| +|.
T Consensus 72 ~~aDvVvi~ag~p~kpG~~R~dL~~~N~~Iv~~i~~~I~~~~-p~a~vlvvtNPvd~~t~~~~k~-~g~p~~rviG~gt~ 149 (326)
T 3pqe_A 72 KDADIVCICAGANQKPGETRLELVEKNLKIFKGIVSEVMASG-FDGIFLVATNPVDILTYATWKF-SGLPKERVIGSGTT 149 (326)
T ss_dssp TTCSEEEECCSCCCCTTCCHHHHHHHHHHHHHHHHHHHHHTT-CCSEEEECSSSHHHHHHHHHHH-HCCCGGGEEECTTH
T ss_pred CCCCEEEEecccCCCCCccHHHHHHHHHHHHHHHHHHHHHhc-CCeEEEEcCChHHHHHHHHHHh-cCCCHHHEEeeccc
Confidence 999999999999999999999999999999999999999998 8999999999999999999997 7899999766 599
Q ss_pred ccHHHHHHHHHHHcCCCCCCeeeeEEEecCCCceeecccCcccccCCCCcchhhhccc----cccchhHHHHHHHhhHHH
Q 019990 159 LDHNRAMGQISERLKVHVSDVKNVIIWGNHSSTQYPDVNHATVTTSKGEKPVREAVAD----DNWLNTEFITTVQQRGAA 234 (332)
Q Consensus 159 l~~~r~~~~~a~~~~v~~~~v~~~~V~G~hg~~~v~~~s~~~v~~~~~~~p~~~~~~~----~~~~~~~~~~~v~~~~~~ 234 (332)
||+.|+++++|+++|+++.+|+.+ |||+||+++||+||++++ +|+|+.+++.+ ++|..++|.+++++++++
T Consensus 150 LD~~R~~~~la~~lgv~~~~V~~~-V~GeHG~t~vp~~S~~~v----~g~p~~~~~~~~~~~~~~~~~~i~~~v~~~g~e 224 (326)
T 3pqe_A 150 LDSARFRFMLSEYFGAAPQNVCAH-IIGEHGDTELPVWSHANV----GGVPVSELVEKNDAYKQEELDQIVDDVKNAAYH 224 (326)
T ss_dssp HHHHHHHHHHHHHHTCCGGGEECC-EEBSSSTTCEECGGGCEE----TTEEHHHHHHTCTTSCHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHhCCCHHHceee-eeecCCCceeeeeeeeeE----CCEEHHHHhhcccCCCHHHHHHHHHHHHhhhhe
Confidence 999999999999999999999986 699999999999999999 99999999866 467889999999999999
Q ss_pred HHHhcCCcchHHHHHHHHHHHHHHHcCCCCCcEEEEEEeecCCCCCCCCeEEEEeEEEe-CCeEEEecCCCCCHHHHHHH
Q 019990 235 IIKARKLSSALSAASSACDHIRDWVLGTPKGTWVSMGVYSDGSYGIPEGLIYSFPVTCE-KGEWSIVKGLKVDEFSRAKM 313 (332)
Q Consensus 235 i~~~~g~~~~~~~a~a~~~~i~~~~~~~~~~~i~~~~v~~~g~yg~~~~~~~s~Pv~~~-~G~~~~~~~~~l~~~E~~~l 313 (332)
|++.||.|+ +++|+|+++++.+++. ++++|+|+|++++|+||++ ++|||+||++| +|++++++ ++||++|+++|
T Consensus 225 Ii~~kG~t~-~a~a~a~~~~~~ail~--~~~~v~~~s~~~~g~yg~~-~v~~s~P~~lg~~Gv~~iv~-l~L~~~E~~~l 299 (326)
T 3pqe_A 225 IIEKKGATY-YGVAMSLARITKAILH--NENSILTVSTYLDGQYGAD-DVYIGVPAVVNRGGIAGITE-LNLNEKEKEQF 299 (326)
T ss_dssp HHHHHSCCC-HHHHHHHHHHHHHHHT--TCCEEECCEEEEESGGGCE-EEEEECCEEEETTEEEEECC-CCCCHHHHHHH
T ss_pred eeeCCCCcH-HHHHHHHHHHHHHHhc--CCCcEEEEEEeeccccCCC-ceEEEEEEEEcCCceEEEec-CCCCHHHHHHH
Confidence 999999776 5668999998888766 3589999999999999995 99999999999 99999996 99999999999
Q ss_pred HHHHHHHHHHHHHH
Q 019990 314 DATAEELAEEKTLA 327 (332)
Q Consensus 314 ~~s~~~i~~~~~~~ 327 (332)
++|++.|++.++..
T Consensus 300 ~~s~~~l~~~~~~~ 313 (326)
T 3pqe_A 300 LHSAGVLKNILKPH 313 (326)
T ss_dssp HHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHHHHh
Confidence 99999999988753
|
| >3vku_A L-LDH, L-lactate dehydrogenase; rossmann fold, NADH binding, oxidoreductase; 1.96A {Lactobacillus casei} PDB: 2zqz_A 2zqy_A 3vkv_A* 1llc_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=5.1e-63 Score=454.24 Aligned_cols=305 Identities=22% Similarity=0.329 Sum_probs=255.4
Q ss_pred CCCcEEEEEcCCChhHHHHHHHHHhcccCCCCCCeEEEEEecccchhhhhhhHhhhhhhccCCccceEEeCCHHHHhCCC
Q 019990 3 KNPLRVLVTGAAGQIGYALVPMIARGIMLGPDQPVILHMLDIEPAAEALNGVKMELIDAAFPLLKGVVATTDVVEACKDV 82 (332)
Q Consensus 3 ~~~~kI~VtGaaG~IGs~l~~~L~~~~~~~~~~~~~i~l~D~~~~~~~~~~~~~dl~~~~~~~~~~v~~~~~~~~a~~~a 82 (332)
++++||+|+| +|.||+++++.|+..++++ +++|+|++. ++++|.++||.|... +..++....+.++++++|
T Consensus 7 ~~~~kV~ViG-aG~vG~~~a~~l~~~~~~~-----el~l~D~~~--~k~~g~a~DL~~~~~-~~~~~~i~~~~~~a~~~a 77 (326)
T 3vku_A 7 KDHQKVILVG-DGAVGSSYAYAMVLQGIAQ-----EIGIVDIFK--DKTKGDAIDLEDALP-FTSPKKIYSAEYSDAKDA 77 (326)
T ss_dssp CCCCEEEEEC-CSHHHHHHHHHHHHHTCCS-----EEEEECSCH--HHHHHHHHHHHTTGG-GSCCCEEEECCGGGGTTC
T ss_pred CCCCEEEEEC-CCHHHHHHHHHHHhCCCCC-----eEEEEeCCh--HHHHHHHhhHhhhhh-hcCCcEEEECcHHHhcCC
Confidence 4578999999 5999999999999988765 999999953 578999999999753 224555555567899999
Q ss_pred cEEEEecCCCCCCCCChhHHHhhhHHHHHHHHHHHHhhcCCCcEEEEEeCChhhHHHHHHHHCCCCCCCcEEE-eecccH
Q 019990 83 NIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEKHAAPNCKVLVVANPANTNALILKEFAPSIPAKNITC-LTRLDH 161 (332)
Q Consensus 83 DiVi~~ag~~~~~~~~~~~~~~~N~~~~~~i~~~i~~~~~~~~~viv~snp~~~~~~~~~~~~~~~~~~~i~~-~t~l~~ 161 (332)
|+||++||.|+++|++|.+++..|+++++++++.+++++ |+++++++|||+|.+++++++. +++|++|++| +|.||+
T Consensus 78 DiVvi~ag~~~kpG~tR~dL~~~N~~I~~~i~~~i~~~~-p~a~ilvvtNPvdi~t~~~~k~-~g~p~~rviG~gt~LD~ 155 (326)
T 3vku_A 78 DLVVITAGAPQKPGETRLDLVNKNLKILKSIVDPIVDSG-FNGIFLVAANPVDILTYATWKL-SGFPKNRVVGSGTSLDT 155 (326)
T ss_dssp SEEEECCCCC----------------CHHHHHHHHHTTT-CCSEEEECSSSHHHHHHHHHHH-HCCCGGGEEECTTHHHH
T ss_pred CEEEECCCCCCCCCchHHHHHHHHHHHHHHHHHHHHhcC-CceEEEEccCchHHHHHHHHHh-cCCCHHHeeeecccCcH
Confidence 999999999999999999999999999999999999998 8999999999999999999998 7899999766 599999
Q ss_pred HHHHHHHHHHcCCCCCCeeeeEEEecCCCceeecccCcccccCCCCcchhhhccc----cccchhHHHHHHHhhHHHHHH
Q 019990 162 NRAMGQISERLKVHVSDVKNVIIWGNHSSTQYPDVNHATVTTSKGEKPVREAVAD----DNWLNTEFITTVQQRGAAIIK 237 (332)
Q Consensus 162 ~r~~~~~a~~~~v~~~~v~~~~V~G~hg~~~v~~~s~~~v~~~~~~~p~~~~~~~----~~~~~~~~~~~v~~~~~~i~~ 237 (332)
.|+++++|+++|+++.+|+.+ |||+||+++||+||++++ +|+|+.+++.+ ++|..+++.+++++++++|++
T Consensus 156 ~R~~~~la~~lgv~~~~V~~~-ViGeHGdt~vp~~S~a~v----~g~pl~~~~~~~~~~~~~~~~~i~~~v~~~g~eIi~ 230 (326)
T 3vku_A 156 ARFRQSIAKMVNVDARSVHAY-IMGEHGDTEFPVWSHANI----GGVTIAEWVKAHPEIKEDKLVKMFEDVRNKAYEIIK 230 (326)
T ss_dssp HHHHHHHHHHHTSCGGGEECC-EEBSSSTTCEECGGGCEE----TTEEHHHHHHHCTTSCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCHHHCeEE-EEcCCCCeeEEeeecccc----CCEEHHHHhccccCCCHHHHHHHHHHHHHHHHHHHh
Confidence 999999999999999999986 699999999999999999 99999998865 467889999999999999999
Q ss_pred hcCCcchHHHHHHHHHHHHHHHcCCCCCcEEEEEEeecCCCCCCCCeEEEEeEEEe-CCeEEEecCCCCCHHHHHHHHHH
Q 019990 238 ARKLSSALSAASSACDHIRDWVLGTPKGTWVSMGVYSDGSYGIPEGLIYSFPVTCE-KGEWSIVKGLKVDEFSRAKMDAT 316 (332)
Q Consensus 238 ~~g~~~~~~~a~a~~~~i~~~~~~~~~~~i~~~~v~~~g~yg~~~~~~~s~Pv~~~-~G~~~~~~~~~l~~~E~~~l~~s 316 (332)
.||.|+ +++|+++++++.+++. ++++|+|+|++++|+||+ +++|||+||++| +|++++++ ++||++|+++|++|
T Consensus 231 ~kG~t~-~a~a~a~~~~~~ail~--~~~~v~~~s~~~~g~yg~-~~v~~s~P~~lg~~Gv~~iv~-l~L~~~E~~~l~~s 305 (326)
T 3vku_A 231 LKGATF-YGIATALARISKAILN--DENAVLPLSVYMDGQYGL-NDIYIGTPAVINRNGIQNILE-IPLTDHEEESMQKS 305 (326)
T ss_dssp HHSCCC-HHHHHHHHHHHHHHHT--TCCEEEEEEEEEEEGGGE-EEEEEEEEEEEETTEEEEECC-CCCCHHHHHHHHHH
T ss_pred cCCCch-HHHHHHHHHHHHHHhc--CCCceEEEEeeccCccCC-CceEEEEEEEEcCCceEEEec-CCCCHHHHHHHHHH
Confidence 999776 4668999987777655 468999999999999999 599999999999 99999996 99999999999999
Q ss_pred HHHHHHHHHHHh
Q 019990 317 AEELAEEKTLAY 328 (332)
Q Consensus 317 ~~~i~~~~~~~~ 328 (332)
+++|++.++...
T Consensus 306 a~~L~~~~~~~~ 317 (326)
T 3vku_A 306 ASQLKKVLTDAF 317 (326)
T ss_dssp HHHHHCC-----
T ss_pred HHHHHHHHHHHH
Confidence 999998887653
|
| >4aj2_A L-lactate dehydrogenase A chain; oxidoreductase-inhibitor complex, fragment-based LEAD genera inhibitors; HET: 52C; 1.75A {Rattus norvegicus} PDB: 4aj1_A* 4aje_A* 4ajh_A* 4aji_A* 4ajj_A* 4ajk_A* 4ajl_A* 4ajn_A* 4ajo_A* 4al4_A* 4aj4_A* 4ajp_A* 1i10_A* 3h3f_A* 9ldt_A* 9ldb_A* 1t2f_A* 1i0z_A* 5ldh_A* 1ldm_A* ... | Back alignment and structure |
|---|
Probab=100.00 E-value=1.1e-61 Score=446.21 Aligned_cols=304 Identities=21% Similarity=0.331 Sum_probs=269.2
Q ss_pred CCCcEEEEEcCCChhHHHHHHHHHhcccCCCCCCeEEEEEecccchhhhhhhHhhhhhhc-cCCccceEEeCCHHHHhCC
Q 019990 3 KNPLRVLVTGAAGQIGYALVPMIARGIMLGPDQPVILHMLDIEPAAEALNGVKMELIDAA-FPLLKGVVATTDVVEACKD 81 (332)
Q Consensus 3 ~~~~kI~VtGaaG~IGs~l~~~L~~~~~~~~~~~~~i~l~D~~~~~~~~~~~~~dl~~~~-~~~~~~v~~~~~~~~a~~~ 81 (332)
.+++||+|+| +|.+|+++++.|+..++.. +++|+|++. +++++.++||.|.. ++....+....+ ++++++
T Consensus 17 ~~~~kV~ViG-aG~vG~~~a~~l~~~~~~~-----el~L~Di~~--~~~~g~a~DL~~~~~~~~~~~i~~~~d-~~~~~~ 87 (331)
T 4aj2_A 17 VPQNKITVVG-VGAVGMACAISILMKDLAD-----ELALVDVIE--DKLKGEMMDLQHGSLFLKTPKIVSSKD-YSVTAN 87 (331)
T ss_dssp CCSSEEEEEC-CSHHHHHHHHHHHHTTCCS-----EEEEECSCH--HHHHHHHHHHHHTGGGCSCCEEEECSS-GGGGTT
T ss_pred CCCCEEEEEC-CCHHHHHHHHHHHhCCCCc-----eEEEEeCCh--HHHHHHHHhhhhhhhccCCCeEEEcCC-HHHhCC
Confidence 3568999999 5999999999999888654 899999963 57899999999974 333334444555 468999
Q ss_pred CcEEEEecCCCCCCCCChhHHHhhhHHHHHHHHHHHHhhcCCCcEEEEEeCChhhHHHHHHHHCCCCCCCcEEEe-eccc
Q 019990 82 VNIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEKHAAPNCKVLVVANPANTNALILKEFAPSIPAKNITCL-TRLD 160 (332)
Q Consensus 82 aDiVi~~ag~~~~~~~~~~~~~~~N~~~~~~i~~~i~~~~~~~~~viv~snp~~~~~~~~~~~~~~~~~~~i~~~-t~l~ 160 (332)
||+||++||.|+++|++|.|++..|+++++++++.+++++ |+++++++|||+|.+++++++. +++|++|++|. |.||
T Consensus 88 aDiVvi~aG~~~kpG~tR~dL~~~N~~I~~~i~~~i~~~~-p~a~vlvvtNPvdi~t~~~~k~-sg~p~~rviG~gt~LD 165 (331)
T 4aj2_A 88 SKLVIITAGARQQEGESRLNLVQRNVNIFKFIIPNVVKYS-PQCKLLIVSNPVDILTYVAWKI-SGFPKNRVIGSGCNLD 165 (331)
T ss_dssp EEEEEECCSCCCCTTCCGGGGHHHHHHHHHHHHHHHHHHC-TTCEEEECSSSHHHHHHHHHHH-HCCCGGGEEECTTHHH
T ss_pred CCEEEEccCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHC-CCeEEEEecChHHHHHHHHHHH-hCCCHHHEEeeccccH
Confidence 9999999999999999999999999999999999999997 9999999999999999999998 68999996555 9999
Q ss_pred HHHHHHHHHHHcCCCCCCeeeeEEEecCCCceeecccCcccccCCCCcchhhhccc-------cccchhHHHHHHHhhHH
Q 019990 161 HNRAMGQISERLKVHVSDVKNVIIWGNHSSTQYPDVNHATVTTSKGEKPVREAVAD-------DNWLNTEFITTVQQRGA 233 (332)
Q Consensus 161 ~~r~~~~~a~~~~v~~~~v~~~~V~G~hg~~~v~~~s~~~v~~~~~~~p~~~~~~~-------~~~~~~~~~~~v~~~~~ 233 (332)
+.|+++++|+++|+++.+|+.+ |||+||+++||+||++++ +|+|+.+++.+ ++| +++.++++++++
T Consensus 166 ~~R~~~~la~~lgv~~~~V~~~-ViGeHG~s~vp~~S~~~v----~G~p~~~~~~~~~~~~~~~~~--~~i~~~v~~~g~ 238 (331)
T 4aj2_A 166 SARFRYLMGERLGVHPLSCHGW-VLGEHGDSSVPVWSGVNV----AGVSLKSLNPQLGTDADKEQW--KDVHKQVVDSAY 238 (331)
T ss_dssp HHHHHHHHHHHHTSCGGGCBCC-EEBCSSTTCEECGGGCEE----TTEEHHHHCTTTTSTTCTTCT--HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCHHHCEEe-EEecCCCceeEeeecCeE----CCEEHHHHHhhccCCCCHHHH--HHHHHHHHHhHH
Confidence 9999999999999999999987 699999999999999999 99999998752 345 799999999999
Q ss_pred HHHHhcCCcchHHHHHHHHHHHHHHHcCCCCCcEEEEEEeecCCCCCCCCeEEEEeEEEe-CCeEEEecCCCCCHHHHHH
Q 019990 234 AIIKARKLSSALSAASSACDHIRDWVLGTPKGTWVSMGVYSDGSYGIPEGLIYSFPVTCE-KGEWSIVKGLKVDEFSRAK 312 (332)
Q Consensus 234 ~i~~~~g~~~~~~~a~a~~~~i~~~~~~~~~~~i~~~~v~~~g~yg~~~~~~~s~Pv~~~-~G~~~~~~~~~l~~~E~~~ 312 (332)
+|++.||.|++ ++|+++++++.+++. |+++++|+|++++|+||+++++|||+||++| +|++++++ ++||++|+++
T Consensus 239 eIi~~kg~t~~-a~a~a~a~~~~ail~--d~~~~~~vs~~~~g~ygi~~~v~~s~P~~lg~~Gv~~iv~-l~L~~~E~~~ 314 (331)
T 4aj2_A 239 EVIKLKGYTSW-AIGLSVADLAESIMK--NLRRVHPISTMIKGLYGIKEDVFLSVPCILGQNGISDVVK-VTLTPDEEAR 314 (331)
T ss_dssp HHHHHHSSCCH-HHHHHHHHHHHHHHT--TCCEEEEEEEECTTGGGCCSCCEEEEEEEEETTEEEEEEC-CCCCHHHHHH
T ss_pred HHhhcCCCCch-hHHHHHHHHHHHHHh--CCCCeEEEEEecCCccCCcCceEEEEEEEEcCCeeEEEcc-CCCCHHHHHH
Confidence 99999997765 678999988887666 3588999999999999998899999999999 99999996 9999999999
Q ss_pred HHHHHHHHHHHHHHHhh
Q 019990 313 MDATAEELAEEKTLAYS 329 (332)
Q Consensus 313 l~~s~~~i~~~~~~~~~ 329 (332)
|++|++.|++ +.+.++
T Consensus 315 l~~s~~~l~~-~~~~~~ 330 (331)
T 4aj2_A 315 LKKSADTLWG-IQKELQ 330 (331)
T ss_dssp HHHHHHHHHH-HHTTCC
T ss_pred HHHHHHHHHH-HHhhcC
Confidence 9999999998 444444
|
| >3nep_X Malate dehydrogenase; halophIle, molecular adpatation, NAD, oxidoreductase, tricarboxylic acid cycle; 1.55A {Salinibacter ruber} | Back alignment and structure |
|---|
Probab=100.00 E-value=5.6e-62 Score=445.87 Aligned_cols=304 Identities=23% Similarity=0.376 Sum_probs=265.3
Q ss_pred cEEEEEcCCChhHHHHHHHHHhcccCCCCCCeEEEEEecccchhhhhhhHhhhhhhccCCcc--ceEEeCCHHHHhCCCc
Q 019990 6 LRVLVTGAAGQIGYALVPMIARGIMLGPDQPVILHMLDIEPAAEALNGVKMELIDAAFPLLK--GVVATTDVVEACKDVN 83 (332)
Q Consensus 6 ~kI~VtGaaG~IGs~l~~~L~~~~~~~~~~~~~i~l~D~~~~~~~~~~~~~dl~~~~~~~~~--~v~~~~~~~~a~~~aD 83 (332)
|||+|+| +|.+|++++..|+..++.+ +++|+|+++ +++++.++||.|..++... ++..+ +.++++++||
T Consensus 1 Mkv~ViG-aG~vG~~~a~~l~~~~~~~-----el~l~D~~~--~k~~g~a~DL~~~~~~~~~~~~v~~~-~~~~a~~~aD 71 (314)
T 3nep_X 1 MKVTVIG-AGNVGATVAECVARQDVAK-----EVVMVDIKD--GMPQGKALDMRESSPIHGFDTRVTGT-NDYGPTEDSD 71 (314)
T ss_dssp CEEEEEC-CSHHHHHHHHHHHHHTCSS-----EEEEECSST--THHHHHHHHHHHHHHHHTCCCEEEEE-SSSGGGTTCS
T ss_pred CEEEEEC-CCHHHHHHHHHHHhCCCCC-----EEEEEeCch--HHHHHHHHHHhccccccCCCcEEEEC-CCHHHhCCCC
Confidence 5899999 5999999999999888754 899999975 4688999999997543322 34333 4578999999
Q ss_pred EEEEecCCCCCCCCChhHHHhhhHHHHHHHHHHHHhhcCCCcEEEEEeCChhhHHHHHHHHCCCCCCCcEEEee-cccHH
Q 019990 84 IAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEKHAAPNCKVLVVANPANTNALILKEFAPSIPAKNITCLT-RLDHN 162 (332)
Q Consensus 84 iVi~~ag~~~~~~~~~~~~~~~N~~~~~~i~~~i~~~~~~~~~viv~snp~~~~~~~~~~~~~~~~~~~i~~~t-~l~~~ 162 (332)
+||+++|.++++|++|.+++..|+++++++++.+.+++ |+++++++|||+|.+++++++. +++|++|++|.| .||+.
T Consensus 72 vVii~ag~~~kpG~~R~dl~~~N~~i~~~i~~~i~~~~-p~a~vivvtNPvd~~t~~~~k~-~g~p~~rviG~~t~LD~~ 149 (314)
T 3nep_X 72 VCIITAGLPRSPGMSRDDLLAKNTEIVGGVTEQFVEGS-PDSTIIVVANPLDVMTYVAYEA-SGFPTNRVMGMAGVLDTG 149 (314)
T ss_dssp EEEECCCC-------CHHHHHHHHHHHHHHHHHHHTTC-TTCEEEECCSSHHHHHHHHHHH-HTCCGGGEEECCHHHHHH
T ss_pred EEEECCCCCCCCCCCHHHHHHhhHHHHHHHHHHHHHhC-CCcEEEecCCchhHHHHHHHHh-cCCChHHEEeecCchHHH
Confidence 99999999999999999999999999999999999998 8999999999999999999997 789999987776 99999
Q ss_pred HHHHHHHHHcCCCCCCeeeeEEEecCCCceeecccCcccccCCCCcchhhhccccccchhHHHHHHHhhHHHHHHhcCCc
Q 019990 163 RAMGQISERLKVHVSDVKNVIIWGNHSSTQYPDVNHATVTTSKGEKPVREAVADDNWLNTEFITTVQQRGAAIIKARKLS 242 (332)
Q Consensus 163 r~~~~~a~~~~v~~~~v~~~~V~G~hg~~~v~~~s~~~v~~~~~~~p~~~~~~~~~~~~~~~~~~v~~~~~~i~~~~g~~ 242 (332)
|+++++|+++|+++.+|+.+ |||+||++++|+||++++ +|+|+.+++.++ | .+++.+++++++++|++.||.+
T Consensus 150 R~~~~la~~lgv~~~~v~~~-ViG~Hg~t~vp~~S~~~v----~g~p~~~~~~~~-~-~~~i~~~v~~~g~eIi~~kg~s 222 (314)
T 3nep_X 150 RFRSFIAEELDVSVRDVQAL-LMGGHGDTMVPLPRYTTV----GGIPVPQLIDDA-R-IEEIVERTKGAGGEIVDLMGTS 222 (314)
T ss_dssp HHHHHHHHHHTCCGGGEEEE-EEESSGGGEEEEEEEEEE----TTEEGGGTSCHH-H-HHHHHHHHHTHHHHHHHHHSSC
T ss_pred HHHHHHHHHhCcCHHHeEEE-EECCCCCcEEeeeecCeE----CcEehhhccCHH-H-HHHHHHHHHHhHHHHHhccCCc
Confidence 99999999999999999987 689999999999999999 999999987654 3 4799999999999999999865
Q ss_pred chHHHHHHHHHHHHHHHcCCCCCcEEEEEEeecCCCCCCCCeEEEEeEEEe-CCeEEEecCCCCCHHHHHHHHHHHHHHH
Q 019990 243 SALSAASSACDHIRDWVLGTPKGTWVSMGVYSDGSYGIPEGLIYSFPVTCE-KGEWSIVKGLKVDEFSRAKMDATAEELA 321 (332)
Q Consensus 243 ~~~~~a~a~~~~i~~~~~~~~~~~i~~~~v~~~g~yg~~~~~~~s~Pv~~~-~G~~~~~~~~~l~~~E~~~l~~s~~~i~ 321 (332)
+++++|+++++++.+++. ++++|+|+|++++|+||+ +++|||+||++| +|++++++ ++||++|+++|++|++.|+
T Consensus 223 a~~a~a~a~~~~~~ail~--~~~~v~~~s~~~~g~yg~-~~~~~s~P~~lg~~Gv~~v~~-l~L~~~E~~~l~~s~~~l~ 298 (314)
T 3nep_X 223 AWYAPGAAAAEMTEAILK--DNKRILPCAAYCDGEYGL-DDLFIGVPVKLGAGGVEEVIE-VDLDADEKAQLKTSAGHVH 298 (314)
T ss_dssp CCHHHHHHHHHHHHHHHH--TCCEEEEEEEEEESGGGC-EEEEEEEEEEEETTEEEEECC-CCCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHc--CCCeEEEEEEEeccccCC-CceEEEEEEEEeCCEEEEecC-CCCCHHHHHHHHHHHHHHH
Confidence 567889999987776665 358999999999999999 799999999999 99999985 9999999999999999999
Q ss_pred HHHHHHhhhh
Q 019990 322 EEKTLAYSCL 331 (332)
Q Consensus 322 ~~~~~~~~~~ 331 (332)
+.++....+|
T Consensus 299 ~~~~~~~~~l 308 (314)
T 3nep_X 299 SNLDDLQRLR 308 (314)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 9999987766
|
| >2x0j_A Malate dehydrogenase; oxidoreductase, hyperthermophilic, tricarboxylic acid cycle; HET: ENA; 2.79A {Archaeoglobus fulgidus dsm 4304} PDB: 2x0i_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.6e-60 Score=431.38 Aligned_cols=287 Identities=22% Similarity=0.312 Sum_probs=252.7
Q ss_pred cEEEEEcCCChhHHHHHHHHHhcccCCCCCCeEEEEEecccchhhhhhhHhhhhhhccCCc--cceEEeCCHHHHhCCCc
Q 019990 6 LRVLVTGAAGQIGYALVPMIARGIMLGPDQPVILHMLDIEPAAEALNGVKMELIDAAFPLL--KGVVATTDVVEACKDVN 83 (332)
Q Consensus 6 ~kI~VtGaaG~IGs~l~~~L~~~~~~~~~~~~~i~l~D~~~~~~~~~~~~~dl~~~~~~~~--~~v~~~~~~~~a~~~aD 83 (332)
|||+|+| +|+||+++++.|+.+++++ |++|+|+++ ++++|.++||.|...... ..+....+ +++++|||
T Consensus 1 MKV~IiG-aG~VG~~~a~~l~~~~~~~-----el~L~Di~~--~~~~G~a~DL~h~~~~~~~~~~i~~~~d-~~~~~~aD 71 (294)
T 2x0j_A 1 MKLGFVG-AGRVGSTSAFTCLLNLDVD-----EIALVDIAE--DLAVGEAMDLAHAAAGIDKYPKIVGGAD-YSLLKGSE 71 (294)
T ss_dssp CEEEEEC-CSHHHHHHHHHHHHHSCCS-----EEEEECSSH--HHHHHHHHHHHHHHGGGTCCCEEEEESC-GGGGTTCS
T ss_pred CEEEEEC-cCHHHHHHHHHHHhCCCCC-----EEEEEeCCC--CcchhhhhhhhcccccCCCCCeEecCCC-HHHhCCCC
Confidence 6899999 6999999999999988875 999999964 578999999999764332 34444444 57899999
Q ss_pred EEEEecCCCCCCCCChhHHHhhhHHHHHHHHHHHHhhcCCCcEEEEEeCChhhHHHHHHHHCCCCCCCc-EEEeecccHH
Q 019990 84 IAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEKHAAPNCKVLVVANPANTNALILKEFAPSIPAKN-ITCLTRLDHN 162 (332)
Q Consensus 84 iVi~~ag~~~~~~~~~~~~~~~N~~~~~~i~~~i~~~~~~~~~viv~snp~~~~~~~~~~~~~~~~~~~-i~~~t~l~~~ 162 (332)
+||++||.||+||++|.|++..|+.+++++++++.+++ |+++++++|||+|++++++++. +++|+++ |+++|.||+.
T Consensus 72 vVvitAG~prkpGmtR~dLl~~Na~I~~~i~~~i~~~~-p~aivlvvsNPvd~~t~i~~k~-sg~p~~rvig~gT~LDs~ 149 (294)
T 2x0j_A 72 IIVVTAGLARKPGMTRLDLAHKNAGIIKDIAKKIVENA-PESKILVVTNPMDVMTYIMWKE-SGKPRNEVFGMGNQLDSQ 149 (294)
T ss_dssp EEEECCCCCCCSSSCHHHHHHHHHHHHHHHHHHHHTTS-TTCEEEECSSSHHHHHHHHHHH-SSCCTTSEEECCHHHHHH
T ss_pred EEEEecCCCCCCCCchHHHHHHHHHHHHHHHHHHHhcC-CceEEEEecCcchhhHHhhHHH-cCCChhhEEEeeeEEeHH
Confidence 99999999999999999999999999999999999998 8999999999999999999998 7899887 6777999999
Q ss_pred HHHHHHHHHcCCCCCCeeeeEEEecCCCceeecccCcccccCCCCcchhhhccccccchhHHHHHHHhhHHHHHHhcCCc
Q 019990 163 RAMGQISERLKVHVSDVKNVIIWGNHSSTQYPDVNHATVTTSKGEKPVREAVADDNWLNTEFITTVQQRGAAIIKARKLS 242 (332)
Q Consensus 163 r~~~~~a~~~~v~~~~v~~~~V~G~hg~~~v~~~s~~~v~~~~~~~p~~~~~~~~~~~~~~~~~~v~~~~~~i~~~~g~~ 242 (332)
|+++++++.++.++. +++ |||+||++++|+||++.+ +|.|. .+++.++++++++||++.||.+
T Consensus 150 R~~~~l~~~~~~~~~--~~~-V~G~HGdt~vp~~S~~~v----~g~~~----------~~~i~~~~~~~g~eIi~~kGst 212 (294)
T 2x0j_A 150 RLKERLYNAGARNIR--RAW-IIGEHGDSMFVAKSLADF----DGEVD----------WEAVENDVRFVAAEVIKRKGAT 212 (294)
T ss_dssp HHHHHHHHTTCEEEC--CCC-EEBCSSTTCEECGGGCCE----ESCCC----------HHHHHHHHHTHHHHHHHHHSSC
T ss_pred HHHHHHhhcccCCcc--eeE-EEecCCCcEEEeeeccCC----CCchh----------HHHHHHHHhhhheEEEecCccc
Confidence 999999999987764 344 699999999999999999 77542 3678899999999999999966
Q ss_pred chHHHHHHHHHHHHHHHcCCCCCcEEEEEEeecCCCCCCCCeEEEEeEEEe-CCeEEEecCCCCCHHHHHHHHHHHHHHH
Q 019990 243 SALSAASSACDHIRDWVLGTPKGTWVSMGVYSDGSYGIPEGLIYSFPVTCE-KGEWSIVKGLKVDEFSRAKMDATAEELA 321 (332)
Q Consensus 243 ~~~~~a~a~~~~i~~~~~~~~~~~i~~~~v~~~g~yg~~~~~~~s~Pv~~~-~G~~~~~~~~~l~~~E~~~l~~s~~~i~ 321 (332)
. +++|+++++++.+++. |+++++|+|++++|+||+ +++|||+||++| +|+ ++++ ++||++|+++|++|++.||
T Consensus 213 ~-~a~a~a~~~~~~ail~--d~~~v~~~s~~l~g~yG~-~~v~~s~P~~lg~~Gv-ei~~-l~L~~~E~~~l~~s~~~lk 286 (294)
T 2x0j_A 213 I-FGPAVAIYRMVKAVVE--DTGEIIPTSMILQGEYGI-ENVAVGVPAKLGKNGA-EVAD-IKLSDEEIEKLRNSAKILR 286 (294)
T ss_dssp C-HHHHHHHHHHHHHHHT--TCCCEEEEEEEEESGGGC-EEEEEEEEEEEETTEE-EECC-CCCCHHHHHHHHHHHHHHH
T ss_pred c-hhHHHHHHHHHHHHHc--CCCcEEEEEEEEecCCCC-ccEEEEEEEEEeCCEE-EEeC-CCCCHHHHHHHHHHHHHHH
Confidence 5 5778999987776555 468999999999999999 699999999999 886 6885 9999999999999999999
Q ss_pred HHHHH
Q 019990 322 EEKTL 326 (332)
Q Consensus 322 ~~~~~ 326 (332)
+.+++
T Consensus 287 ~~i~~ 291 (294)
T 2x0j_A 287 ERLEE 291 (294)
T ss_dssp HHHHT
T ss_pred HHHHH
Confidence 98875
|
| >3tl2_A Malate dehydrogenase; center for structural genomics of infectious diseases, csgid dehydrogenase, oxidoreductase, citric acid cycle; 1.70A {Bacillus anthracis} | Back alignment and structure |
|---|
Probab=100.00 E-value=4.9e-60 Score=433.53 Aligned_cols=304 Identities=21% Similarity=0.352 Sum_probs=269.3
Q ss_pred CCCCCcEEEEEcCCChhHHHHHHHHHhcccCCCCCCeEEEEEecccchhhhhhhHhhhhhhcc--CCccceEEeCCHHHH
Q 019990 1 MAKNPLRVLVTGAAGQIGYALVPMIARGIMLGPDQPVILHMLDIEPAAEALNGVKMELIDAAF--PLLKGVVATTDVVEA 78 (332)
Q Consensus 1 m~~~~~kI~VtGaaG~IGs~l~~~L~~~~~~~~~~~~~i~l~D~~~~~~~~~~~~~dl~~~~~--~~~~~v~~~~~~~~a 78 (332)
|+++++||+|+| +|.+|++++..|+..++ + +++|+|++..++++++..+|+.|... .....+..+++ +++
T Consensus 4 m~~~~~kv~ViG-aG~vG~~ia~~l~~~g~-~-----~v~l~D~~~~~~~~~g~a~dl~~~~~~~~~~~~i~~t~d-~~a 75 (315)
T 3tl2_A 4 MTIKRKKVSVIG-AGFTGATTAFLLAQKEL-A-----DVVLVDIPQLENPTKGKALDMLEASPVQGFDANIIGTSD-YAD 75 (315)
T ss_dssp CCCCCCEEEEEC-CSHHHHHHHHHHHHTTC-C-----EEEEECCGGGHHHHHHHHHHHHHHHHHHTCCCCEEEESC-GGG
T ss_pred cccCCCEEEEEC-CCHHHHHHHHHHHhCCC-C-----eEEEEeccchHHHHHHhhhhHHHhhhhccCCCEEEEcCC-HHH
Confidence 666778999999 59999999999998876 4 89999997324578888999988641 12235655555 678
Q ss_pred hCCCcEEEEecCCCCCCCCChhHHHhhhHHHHHHHHHHHHhhcCCCcEEEEEeCChhhHHHHHHHHCCCCCCCcEEEe-e
Q 019990 79 CKDVNIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEKHAAPNCKVLVVANPANTNALILKEFAPSIPAKNITCL-T 157 (332)
Q Consensus 79 ~~~aDiVi~~ag~~~~~~~~~~~~~~~N~~~~~~i~~~i~~~~~~~~~viv~snp~~~~~~~~~~~~~~~~~~~i~~~-t 157 (332)
+++||+||+++|.|+++|++|.+++..|+++++++++.+.+++ |+++++++|||+|.+++++++. +++|++|++|. |
T Consensus 76 ~~~aDvVIiaag~p~kpg~~R~dl~~~N~~i~~~i~~~i~~~~-p~a~vlvvsNPvd~~t~~~~k~-sg~p~~rviG~gt 153 (315)
T 3tl2_A 76 TADSDVVVITAGIARKPGMSRDDLVATNSKIMKSITRDIAKHS-PNAIIVVLTNPVDAMTYSVFKE-AGFPKERVIGQSG 153 (315)
T ss_dssp GTTCSEEEECCSCCCCTTCCHHHHHHHHHHHHHHHHHHHHHHC-TTCEEEECCSSHHHHHHHHHHH-HCCCGGGEEECCH
T ss_pred hCCCCEEEEeCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhC-CCeEEEECCChHHHHHHHHHHh-cCCChHHEEeecc
Confidence 9999999999999999999999999999999999999999998 8999999999999999999997 78999997666 9
Q ss_pred cccHHHHHHHHHHHcCCCCCCeeeeEEEecCCCceeecccCcccccCCCCcchhhhccccccchhHHHHHHHhhHHHHHH
Q 019990 158 RLDHNRAMGQISERLKVHVSDVKNVIIWGNHSSTQYPDVNHATVTTSKGEKPVREAVADDNWLNTEFITTVQQRGAAIIK 237 (332)
Q Consensus 158 ~l~~~r~~~~~a~~~~v~~~~v~~~~V~G~hg~~~v~~~s~~~v~~~~~~~p~~~~~~~~~~~~~~~~~~v~~~~~~i~~ 237 (332)
.||+.|+++++|+++|+++.+|+.+ |||+||+++||+||++++ +|+|+.+++.++. .++|.+++++++++|++
T Consensus 154 ~LD~~R~~~~la~~lgv~~~~v~~~-viG~Hg~t~vp~~S~~~v----~g~p~~~~~~~~~--~~~i~~~v~~~g~eii~ 226 (315)
T 3tl2_A 154 VLDTARFRTFIAQELNLSVKDITGF-VLGGHGDDMVPLVRYSYA----GGIPLETLIPKER--LEAIVERTRKGGGEIVG 226 (315)
T ss_dssp HHHHHHHHHHHHHHHTCCGGGEECC-EEBCSGGGCEECGGGCEE----TTEEGGGTSCHHH--HHHHHHHHHTHHHHHHH
T ss_pred CcHHHHHHHHHHHHhCcCHHHceee-EecCCCCcceeecccCeE----CCEEHHHhCCHHH--HHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999998 589999999999999999 9999999876553 47999999999999999
Q ss_pred --hcCCcchHHHHHHHHHHHHHHHcCCCCCcEEEEEEeecCCCCCCCCeEEEEeEEEe-CCeEEEecCCCCCHHHHHHHH
Q 019990 238 --ARKLSSALSAASSACDHIRDWVLGTPKGTWVSMGVYSDGSYGIPEGLIYSFPVTCE-KGEWSIVKGLKVDEFSRAKMD 314 (332)
Q Consensus 238 --~~g~~~~~~~a~a~~~~i~~~~~~~~~~~i~~~~v~~~g~yg~~~~~~~s~Pv~~~-~G~~~~~~~~~l~~~E~~~l~ 314 (332)
.||.+ ++++|+++++++.+++. ++++|+|+|++++|+||+ +++|||+||++| +|++++++ ++|+++|+++|+
T Consensus 227 ~~~kgst-~~a~a~a~~~~~~ail~--~~~~v~~~s~~~~g~yg~-~~~~~s~P~~~g~~Gv~~v~~-l~L~~~E~~~l~ 301 (315)
T 3tl2_A 227 LLGNGSA-YYAPAASLVEMTEAILK--DQRRVLPAIAYLEGEYGY-SDLYLGVPVILGGNGIEKIIE-LELLADEKEALD 301 (315)
T ss_dssp HHSSSCC-CHHHHHHHHHHHHHHHT--TCCEEEEEEEEEESGGGC-EEEEEEEEEEEETTEEEEECC-CCCCHHHHHHHH
T ss_pred hcCCCcc-hHHHHHHHHHHHHHHHc--CCCcEEEEEEeccCccCC-CceEEEEEEEEeCCEEEEEcC-CCCCHHHHHHHH
Confidence 66644 56779999988877666 368999999999999999 799999999999 99999995 999999999999
Q ss_pred HHHHHHHHHHHH
Q 019990 315 ATAEELAEEKTL 326 (332)
Q Consensus 315 ~s~~~i~~~~~~ 326 (332)
+|++.|++.++.
T Consensus 302 ~s~~~l~~~~~~ 313 (315)
T 3tl2_A 302 RSVESVRNVMKV 313 (315)
T ss_dssp HHHHHHHHHHTT
T ss_pred HHHHHHHHHHHH
Confidence 999999998764
|
| >3fi9_A Malate dehydrogenase; structural genomics, oxidoreductase, PSI-2, protein structur initiative; 1.90A {Porphyromonas gingivalis} | Back alignment and structure |
|---|
Probab=100.00 E-value=7.4e-61 Score=442.79 Aligned_cols=304 Identities=26% Similarity=0.371 Sum_probs=263.4
Q ss_pred CCcEEEEEcCCChhHHHHHHHHHhcccCCCCCCeEEEEEecccchhhhhhhHhhhhhhccCCccceEEeCCHHHHhCCCc
Q 019990 4 NPLRVLVTGAAGQIGYALVPMIARGIMLGPDQPVILHMLDIEPAAEALNGVKMELIDAAFPLLKGVVATTDVVEACKDVN 83 (332)
Q Consensus 4 ~~~kI~VtGaaG~IGs~l~~~L~~~~~~~~~~~~~i~l~D~~~~~~~~~~~~~dl~~~~~~~~~~v~~~~~~~~a~~~aD 83 (332)
+++||+|+||+|+||++++..++..++.. +|+|+|++. +++++.++||.|..++ ..++..+++.++++++||
T Consensus 7 ~~~KV~ViGaaG~VG~~~a~~l~~~g~~~-----evvLiDi~~--~k~~g~a~DL~~~~~~-~~~i~~t~d~~~al~dAD 78 (343)
T 3fi9_A 7 TEEKLTIVGAAGMIGSNMAQTAAMMRLTP-----NLCLYDPFA--VGLEGVAEEIRHCGFE-GLNLTFTSDIKEALTDAK 78 (343)
T ss_dssp CSSEEEEETTTSHHHHHHHHHHHHTTCCS-----CEEEECSCH--HHHHHHHHHHHHHCCT-TCCCEEESCHHHHHTTEE
T ss_pred CCCEEEEECCCChHHHHHHHHHHhcCCCC-----EEEEEeCCc--hhHHHHHHhhhhCcCC-CCceEEcCCHHHHhCCCC
Confidence 56899999977999999999999888653 899999864 5789999999997543 246667788889999999
Q ss_pred EEEEecCCCCCCCCChhHHHhhhHHHHHHHHHHHHhhcCCCcE-EEEEeCChhhHHHHHHHHCCCCCCCcEEEeecccHH
Q 019990 84 IAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEKHAAPNCK-VLVVANPANTNALILKEFAPSIPAKNITCLTRLDHN 162 (332)
Q Consensus 84 iVi~~ag~~~~~~~~~~~~~~~N~~~~~~i~~~i~~~~~~~~~-viv~snp~~~~~~~~~~~~~~~~~~~i~~~t~l~~~ 162 (332)
+||++||.|+++|++|.+++..|+++++++++.+++++ |+++ ++++|||+|.+++++++. +++|++|++++|.||+.
T Consensus 79 vVvitaG~p~kpG~~R~dLl~~N~~I~~~i~~~i~~~~-p~a~~vlvvsNPvd~~t~i~~k~-sg~p~~rv~g~t~LDs~ 156 (343)
T 3fi9_A 79 YIVSSGGAPRKEGMTREDLLKGNAEIAAQLGKDIKSYC-PDCKHVIIIFNPADITGLVTLIY-SGLKPSQVTTLAGLDST 156 (343)
T ss_dssp EEEECCC-------CHHHHHHHHHHHHHHHHHHHHHHC-TTCCEEEECSSSHHHHHHHHHHH-HTCCGGGEEEECCHHHH
T ss_pred EEEEccCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhc-cCcEEEEEecCchHHHHHHHHHH-cCCCcceEEEecCcHHH
Confidence 99999999999999999999999999999999999998 8985 899999999999999998 68999998899999999
Q ss_pred HHHHHHHHHcCCCCCCeeeeEEEecCCCceeecccCcccccCCCCcchhhhccc-----cccchhHHHHHHHhhHHHHHH
Q 019990 163 RAMGQISERLKVHVSDVKNVIIWGNHSSTQYPDVNHATVTTSKGEKPVREAVAD-----DNWLNTEFITTVQQRGAAIIK 237 (332)
Q Consensus 163 r~~~~~a~~~~v~~~~v~~~~V~G~hg~~~v~~~s~~~v~~~~~~~p~~~~~~~-----~~~~~~~~~~~v~~~~~~i~~ 237 (332)
|+++++|+++|++|.+|+..+|||+||++++|+||++++ +|+|+.+++.. ++| ++|.+++++++++|++
T Consensus 157 R~~~~la~~l~v~~~~v~~~~ViGeHgds~vp~~S~a~v----~G~pl~~~~~~~~~~~~~~--~~i~~~v~~~g~eIi~ 230 (343)
T 3fi9_A 157 RLQSELAKHFGIKQSLVTNTRTYGGHGEQMAVFASTAKV----NGTPLTDLIGTDKLTNEQW--AELKQRVVKGGANIIK 230 (343)
T ss_dssp HHHHHHHHHHTSCGGGEECCCEEESSGGGEEECGGGCEE----TTEEGGGTTTBTTBCHHHH--HHHHHHHHTHHHHHHH
T ss_pred HHHHHHHHHhCcCHHHcccceEEEcCCCceeeeeecceE----CCEEhhHhccccCCCHHHH--HHHHHHHHhhhHHHHH
Confidence 999999999999999998434799999999999999999 99999998643 334 5899999999999999
Q ss_pred hcCCcchHHHHHHHHHHHHHHHcCCCCCcEEEEEEeecCCCCCCCCeEEEEeEEEe-CCeEEEecCCC--CCHHHHHHHH
Q 019990 238 ARKLSSALSAASSACDHIRDWVLGTPKGTWVSMGVYSDGSYGIPEGLIYSFPVTCE-KGEWSIVKGLK--VDEFSRAKMD 314 (332)
Q Consensus 238 ~~g~~~~~~~a~a~~~~i~~~~~~~~~~~i~~~~v~~~g~yg~~~~~~~s~Pv~~~-~G~~~~~~~~~--l~~~E~~~l~ 314 (332)
.||+|+++++|+++++++.+++.+ +++++|+|++++|+| . +++|||+||++| +|+.++ . ++ |+++|+++|+
T Consensus 231 ~kg~ss~~s~A~a~~~~~~ail~d--~~~v~~~s~~~~g~~-~-~~v~~s~P~~lg~~Gv~~~-~-~~~ll~~~E~~~l~ 304 (343)
T 3fi9_A 231 LRGRSSFQSPSYVSIEMIRAAMGG--EAFRWPAGCYVNVPG-F-EHIMMAMETTITKDGVKHS-D-INQLGNEAERAALK 304 (343)
T ss_dssp HHSSCCCHHHHHHHHHHHHHHTTS--SCCCSCEEEEEEETT-E-EEEEEEESEEEETTEEEEC-C-GGGSSCHHHHHHHH
T ss_pred ccCCCcHHhHHHHHHHHHHHHHhC--CCceEEEEEEEeCCC-c-CceEEEeEEEEeCCceEEE-e-cCCCCCHHHHHHHH
Confidence 999999999999999988887664 467999999999874 4 799999999999 998765 3 44 8999999999
Q ss_pred HHHHHHHHHHHHHhh
Q 019990 315 ATAEELAEEKTLAYS 329 (332)
Q Consensus 315 ~s~~~i~~~~~~~~~ 329 (332)
+|++.|++.++....
T Consensus 305 ~Sa~~l~~~~~~~~~ 319 (343)
T 3fi9_A 305 ESYSHLAKLRDEVIA 319 (343)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 999999999988754
|
| >3p7m_A Malate dehydrogenase; putative dehydrogenase, enzyme, structural genomics, center structural genomics of infectious diseases, csgid; 2.20A {Francisella tularensis} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.2e-59 Score=432.35 Aligned_cols=307 Identities=20% Similarity=0.352 Sum_probs=271.3
Q ss_pred CCcEEEEEcCCChhHHHHHHHHHhcccCCCCCCeEEEEEecccchhhhhhhHhhhhhhccCC--ccceEEeCCHHHHhCC
Q 019990 4 NPLRVLVTGAAGQIGYALVPMIARGIMLGPDQPVILHMLDIEPAAEALNGVKMELIDAAFPL--LKGVVATTDVVEACKD 81 (332)
Q Consensus 4 ~~~kI~VtGaaG~IGs~l~~~L~~~~~~~~~~~~~i~l~D~~~~~~~~~~~~~dl~~~~~~~--~~~v~~~~~~~~a~~~ 81 (332)
+++||+|+| +|.+|++++..|+..++. +++|+|+++ +++++..+|+.|...+. ...+..+.+ ++++++
T Consensus 4 ~~~kI~iiG-aG~vG~~~a~~l~~~~~~------~v~l~Di~~--~~~~g~a~dL~~~~~~~~~~~~v~~t~d-~~a~~~ 73 (321)
T 3p7m_A 4 ARKKITLVG-AGNIGGTLAHLALIKQLG------DVVLFDIAQ--GMPNGKALDLLQTCPIEGVDFKVRGTND-YKDLEN 73 (321)
T ss_dssp CCCEEEEEC-CSHHHHHHHHHHHHTTCC------EEEEECSSS--SHHHHHHHHHHTTHHHHTCCCCEEEESC-GGGGTT
T ss_pred CCCEEEEEC-CCHHHHHHHHHHHhCCCc------eEEEEeCCh--HHHHHHHHHHHhhhhhcCCCcEEEEcCC-HHHHCC
Confidence 357999999 699999999999988751 899999975 46788899999865322 234554555 689999
Q ss_pred CcEEEEecCCCCCCCCChhHHHhhhHHHHHHHHHHHHhhcCCCcEEEEEeCChhhHHHHHHHHCCCCCCCcEEEee-ccc
Q 019990 82 VNIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEKHAAPNCKVLVVANPANTNALILKEFAPSIPAKNITCLT-RLD 160 (332)
Q Consensus 82 aDiVi~~ag~~~~~~~~~~~~~~~N~~~~~~i~~~i~~~~~~~~~viv~snp~~~~~~~~~~~~~~~~~~~i~~~t-~l~ 160 (332)
||+||+++|.|+++|++|.|++..|+++++++++.+.+++ |+++++++|||+|.+++++++. +++|++|++|.| .||
T Consensus 74 aDvVIi~ag~p~k~G~~R~dl~~~N~~i~~~i~~~i~~~~-p~a~vivvtNPvd~~t~~~~k~-sg~p~~rviG~~~~LD 151 (321)
T 3p7m_A 74 SDVVIVTAGVPRKPGMSRDDLLGINIKVMQTVGEGIKHNC-PNAFVICITNPLDIMVNMLQKF-SGVPDNKIVGMAGVLD 151 (321)
T ss_dssp CSEEEECCSCCCCTTCCHHHHHHHHHHHHHHHHHHHHHHC-TTCEEEECCSSHHHHHHHHHHH-HCCCGGGEEEECHHHH
T ss_pred CCEEEEcCCcCCCCCCCHHHHHHHhHHHHHHHHHHHHHHC-CCcEEEEecCchHHHHHHHHHh-cCCCHHHEEeeccchH
Confidence 9999999999999999999999999999999999999998 9999999999999999999998 799999977776 999
Q ss_pred HHHHHHHHHHHcCCCCCCeeeeEEEecCCCceeecccCcccccCCCCcchhhhcccccc----chhHHHHHHHhhHHHHH
Q 019990 161 HNRAMGQISERLKVHVSDVKNVIIWGNHSSTQYPDVNHATVTTSKGEKPVREAVADDNW----LNTEFITTVQQRGAAII 236 (332)
Q Consensus 161 ~~r~~~~~a~~~~v~~~~v~~~~V~G~hg~~~v~~~s~~~v~~~~~~~p~~~~~~~~~~----~~~~~~~~v~~~~~~i~ 236 (332)
+.|+++++|+++|++|.+|+.+ |||+||++++|+||++++ +|+|+.+++.+ .| ..+++.+++++++++|+
T Consensus 152 ~~R~~~~la~~l~v~~~~v~~~-v~G~HG~t~~p~~s~~~v----~g~p~~~~~~~-~~~~~~~~~~i~~~v~~~g~eIi 225 (321)
T 3p7m_A 152 SARFRTFLADELNVSVQQVQAY-VMGGHGDTMVPLTKMSNV----AGVSLEQLVKE-GKLKQERLDAIVSRTRSGGGEIV 225 (321)
T ss_dssp HHHHHHHHHHHHTCCGGGEECC-EEECSGGGEEECTTTCEE----TTEEHHHHHHT-TSSCHHHHHHHHHHHHTHHHHHH
T ss_pred HHHHHHHHHHHhCcCHHHceEe-eecCcCCceeeeeeeceE----CCEehhhhccc-cCCCHHHHHHHHHHHHhhhHHHH
Confidence 9999999999999999999987 589999999999999999 99999998732 33 24578999999999999
Q ss_pred HhcCC-cchHHHHHHHHHHHHHHHcCCCCCcEEEEEEeec-CCCCCCCCeEEEEeEEEe-CCeEEEecCCCCCHHHHHHH
Q 019990 237 KARKL-SSALSAASSACDHIRDWVLGTPKGTWVSMGVYSD-GSYGIPEGLIYSFPVTCE-KGEWSIVKGLKVDEFSRAKM 313 (332)
Q Consensus 237 ~~~g~-~~~~~~a~a~~~~i~~~~~~~~~~~i~~~~v~~~-g~yg~~~~~~~s~Pv~~~-~G~~~~~~~~~l~~~E~~~l 313 (332)
+.||. ++++++|+++++++.+++.+ +++|+|+|++++ |+||+++++|||+||++| +|++++ + ++||++|+++|
T Consensus 226 ~~~g~gsa~~~~a~a~~~~~~ail~~--~~~v~~~s~~~~~g~ygi~~~v~~s~P~~~g~~Gv~~v-~-l~L~~~E~~~l 301 (321)
T 3p7m_A 226 ALLKTGSAYYAPAAAGIQMAESFLKD--KKMILPCAAKVKAGMYGLDEDLFVGVPTEISANGVRPI-E-VEISDKEREQL 301 (321)
T ss_dssp HHHSSSCCCHHHHHHHHHHHHHHHTT--CCEEEEEEEEECTTGGGCSSCEEEEEEEEEETTEEEEC-C-CCCCHHHHHHH
T ss_pred HhcCCCChHHHHHHHHHHHHHHHHcC--CCcEEEEEEEccCcccCCCCCeEEEEEEEEcCCEEEEe-C-CCCCHHHHHHH
Confidence 97664 44588899999988887774 579999999999 999997799999999999 888888 5 99999999999
Q ss_pred HHHHHHHHHHHHHHhhhhC
Q 019990 314 DATAEELAEEKTLAYSCLN 332 (332)
Q Consensus 314 ~~s~~~i~~~~~~~~~~~~ 332 (332)
++|++.|++.++....+|+
T Consensus 302 ~~s~~~l~~~~~~~~~~l~ 320 (321)
T 3p7m_A 302 QVSINAIKDLNKAAAEILA 320 (321)
T ss_dssp HHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHhh
Confidence 9999999999999888775
|
| >1oju_A MDH, malate dehydrogenase; hyperthermophilic, oxidoreductase; HET: ENA; 2.79A {Archaeoglobus fulgidus} PDB: 1ojs_A* 2x0i_A* 2x0j_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=4.5e-59 Score=423.25 Aligned_cols=287 Identities=22% Similarity=0.303 Sum_probs=256.9
Q ss_pred cEEEEEcCCChhHHHHHHHHHhcccCCCCCCeEEEEEecccchhhhhhhHhhhhhhccC--CccceEEeCCHHHHhCCCc
Q 019990 6 LRVLVTGAAGQIGYALVPMIARGIMLGPDQPVILHMLDIEPAAEALNGVKMELIDAAFP--LLKGVVATTDVVEACKDVN 83 (332)
Q Consensus 6 ~kI~VtGaaG~IGs~l~~~L~~~~~~~~~~~~~i~l~D~~~~~~~~~~~~~dl~~~~~~--~~~~v~~~~~~~~a~~~aD 83 (332)
|||+|+|| |.+|++++..|+..++.+ +++|+|+++ +++++..+|+.|...+ ...++..+++ ++++++||
T Consensus 1 MkI~ViGa-G~vG~~la~~l~~~~~~~-----~v~L~D~~~--~~~~g~~~dl~~~~~~~~~~~~i~~t~d-~~a~~~aD 71 (294)
T 1oju_A 1 MKLGFVGA-GRVGSTSAFTCLLNLDVD-----EIALVDIAE--DLAVGEAMDLAHAAAGIDKYPKIVGGAD-YSLLKGSE 71 (294)
T ss_dssp CEEEEECC-SHHHHHHHHHHHHHSCCS-----EEEEECSSH--HHHHHHHHHHHHHHHTTTCCCEEEEESC-GGGGTTCS
T ss_pred CEEEEECC-CHHHHHHHHHHHhCCCCC-----eEEEEECCh--HHHHHHHHHHHhhhhhcCCCCEEEEeCC-HHHhCCCC
Confidence 58999995 999999999999888754 899999964 5678889999887532 2345666667 88999999
Q ss_pred EEEEecCCCCCCCCChhHHHhhhHHHHHHHHHHHHhhcCCCcEEEEEeCChhhHHHHHHHHCCCCCCCcEEEe-ecccHH
Q 019990 84 IAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEKHAAPNCKVLVVANPANTNALILKEFAPSIPAKNITCL-TRLDHN 162 (332)
Q Consensus 84 iVi~~ag~~~~~~~~~~~~~~~N~~~~~~i~~~i~~~~~~~~~viv~snp~~~~~~~~~~~~~~~~~~~i~~~-t~l~~~ 162 (332)
+||+++|.++++|++|.+++..|+++++++++.+.+++ |+++++++|||+|.++++++++ +++|++|++|. |.||+.
T Consensus 72 iVViaag~~~kpG~~R~dl~~~N~~i~~~i~~~i~~~~-p~a~iivvsNPvd~~t~~~~k~-~g~p~~rviG~gt~LD~~ 149 (294)
T 1oju_A 72 IIVVTAGLARKPGMTRLDLAHKNAGIIKDIAKKIVENA-PESKILVVTNPMDVMTYIMWKE-SGKPRNEVFGMGNQLDSQ 149 (294)
T ss_dssp EEEECCCCCCCSSCCHHHHHHHHHHHHHHHHHHHHTTS-TTCEEEECSSSHHHHHHHHHHH-SCCCTTSEEECSHHHHHH
T ss_pred EEEECCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHhhC-CCeEEEEeCCcchHHHHHHHHh-cCCCHHHEeecccccHHH
Confidence 99999999999999999999999999999999999997 9999999999999999999998 89999997666 899999
Q ss_pred HHHHHHHHHcCCCCCCeeeeEEEecCCCceeecccCcccccCCCCcchhhhccccccchhHHHHHHHhhHHHHHHhcCCc
Q 019990 163 RAMGQISERLKVHVSDVKNVIIWGNHSSTQYPDVNHATVTTSKGEKPVREAVADDNWLNTEFITTVQQRGAAIIKARKLS 242 (332)
Q Consensus 163 r~~~~~a~~~~v~~~~v~~~~V~G~hg~~~v~~~s~~~v~~~~~~~p~~~~~~~~~~~~~~~~~~v~~~~~~i~~~~g~~ 242 (332)
|+++++| ++|++|.+ +.+ |||+||++++|+||++++ +|+| +.+++.+++++++++|++.||.+
T Consensus 150 R~~~~la-~l~v~~~~-~~~-V~G~Hg~t~vp~~s~~~v----~g~~----------~~~~~~~~v~~~g~eii~~kG~t 212 (294)
T 1oju_A 150 RLKERLY-NAGARNIR-RAW-IIGEHGDSMFVAKSLADF----DGEV----------DWEAVENDVRFVAAEVIKRKGAT 212 (294)
T ss_dssp HHHHHHH-HTTCBSCC-CCC-EEBCSSTTCEECGGGCCC----BSCC----------CHHHHHHHHHTTHHHHHHHHSSC
T ss_pred HHHHHHH-HhCCCccC-ceE-EEecCCCceeeecccceE----CCcC----------hHHHHHHHHHHHHHHHHHhcCCc
Confidence 9999999 99999999 876 699999999999999999 8887 14799999999999999999955
Q ss_pred chHHHHHHHHHHHHHHHcCCCCCcEEEEEEeecCCCCCCCCeEEEEeEEEe-CCeEEEecCCCCCHHHHHHHHHHHHHHH
Q 019990 243 SALSAASSACDHIRDWVLGTPKGTWVSMGVYSDGSYGIPEGLIYSFPVTCE-KGEWSIVKGLKVDEFSRAKMDATAEELA 321 (332)
Q Consensus 243 ~~~~~a~a~~~~i~~~~~~~~~~~i~~~~v~~~g~yg~~~~~~~s~Pv~~~-~G~~~~~~~~~l~~~E~~~l~~s~~~i~ 321 (332)
+ +++|+++++++.+++. ++++|+|+|++++|+||++ ++|||+||+++ +|++ ++ +++|+++|+++|++|+++|+
T Consensus 213 ~-~~~a~a~~~~~~ail~--~~~~v~~~s~~~~g~yg~~-~~~~s~P~~~g~~Gv~-v~-~l~L~~~E~~~l~~s~~~l~ 286 (294)
T 1oju_A 213 I-FGPAVAIYRMVKAVVE--DTGEIIPTSMILQGEYGIE-NVAVGVPAKLGKNGAE-VA-DIKLSDEEIEKLRNSAKILR 286 (294)
T ss_dssp C-HHHHHHHHHHHHHHHT--TCCCEEEEEEEEESGGGCE-EEEEEEEEEEETTEEE-EC-CCCCCHHHHHHHHHHHHHHH
T ss_pred c-hHHHHHHHHHHHHHHc--CCCeEEEEEecccccCCCC-ceEEEEEEEEeCCEEE-Ee-cCCCCHHHHHHHHHHHHHHH
Confidence 4 6779999988877666 3588999999999999995 99999999999 8888 77 49999999999999999999
Q ss_pred HHHHH
Q 019990 322 EEKTL 326 (332)
Q Consensus 322 ~~~~~ 326 (332)
+.++.
T Consensus 287 ~~~~~ 291 (294)
T 1oju_A 287 ERLEE 291 (294)
T ss_dssp HHHHT
T ss_pred HHHHh
Confidence 99875
|
| >3gvi_A Malate dehydrogenase; NAD, oxidoreductase, tricarboxylic acid cycle, structural genomics; HET: ADP; 2.25A {Brucella melitensis biovar ABORTUS2308} PDB: 3gvh_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1e-58 Score=426.08 Aligned_cols=304 Identities=22% Similarity=0.372 Sum_probs=264.0
Q ss_pred CCcEEEEEcCCChhHHHHHHHHHhcccCCCCCCeEEEEEecccchhhhhhhHhhhhhhccCC--ccceEEeCCHHHHhCC
Q 019990 4 NPLRVLVTGAAGQIGYALVPMIARGIMLGPDQPVILHMLDIEPAAEALNGVKMELIDAAFPL--LKGVVATTDVVEACKD 81 (332)
Q Consensus 4 ~~~kI~VtGaaG~IGs~l~~~L~~~~~~~~~~~~~i~l~D~~~~~~~~~~~~~dl~~~~~~~--~~~v~~~~~~~~a~~~ 81 (332)
+++||+|+|| |.+|++++..|+..++ . +++|+|+++ +++++..+|+.|...+. ...+..+++. +++++
T Consensus 6 ~~~kI~viGa-G~vG~~~a~~l~~~~~-~-----~v~L~Di~~--~~~~g~~~dl~~~~~~~~~~~~v~~t~d~-~a~~~ 75 (324)
T 3gvi_A 6 ARNKIALIGS-GMIGGTLAHLAGLKEL-G-----DVVLFDIAE--GTPQGKGLDIAESSPVDGFDAKFTGANDY-AAIEG 75 (324)
T ss_dssp CCCEEEEECC-SHHHHHHHHHHHHTTC-C-----EEEEECSSS--SHHHHHHHHHHHHHHHHTCCCCEEEESSG-GGGTT
T ss_pred cCCEEEEECC-CHHHHHHHHHHHhCCC-C-----eEEEEeCCc--hhHHHHHHHHhchhhhcCCCCEEEEeCCH-HHHCC
Confidence 4679999995 9999999999998875 2 899999975 46788899999875322 2456655664 89999
Q ss_pred CcEEEEecCCCCCCCCChhHHHhhhHHHHHHHHHHHHhhcCCCcEEEEEeCChhhHHHHHHHHCCCCCCCcEEEee-ccc
Q 019990 82 VNIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEKHAAPNCKVLVVANPANTNALILKEFAPSIPAKNITCLT-RLD 160 (332)
Q Consensus 82 aDiVi~~ag~~~~~~~~~~~~~~~N~~~~~~i~~~i~~~~~~~~~viv~snp~~~~~~~~~~~~~~~~~~~i~~~t-~l~ 160 (332)
||+||+++|.|+++|++|.|++..|+++++++++.+++++ |+++++++|||+|.++++++++ +++|++|++|.| .||
T Consensus 76 aDiVIiaag~p~k~G~~R~dl~~~N~~i~~~i~~~i~~~~-p~a~iivvtNPvd~~t~~~~k~-sg~p~~rviG~~~~LD 153 (324)
T 3gvi_A 76 ADVVIVTAGVPRKPGMSRDDLLGINLKVMEQVGAGIKKYA-PEAFVICITNPLDAMVWALQKF-SGLPAHKVVGMAGVLD 153 (324)
T ss_dssp CSEEEECCSCCCC-----CHHHHHHHHHHHHHHHHHHHHC-TTCEEEECCSSHHHHHHHHHHH-HCCCGGGEEECCHHHH
T ss_pred CCEEEEccCcCCCCCCCHHHHHHhhHHHHHHHHHHHHHHC-CCeEEEecCCCcHHHHHHHHHh-cCCCHHHEEeecCccH
Confidence 9999999999999999999999999999999999999998 9999999999999999999997 789999987777 899
Q ss_pred HHHHHHHHHHHcCCCCCCeeeeEEEecCCCceeecccCcccccCCCCcchhhhcccccc----chhHHHHHHHhhHHHHH
Q 019990 161 HNRAMGQISERLKVHVSDVKNVIIWGNHSSTQYPDVNHATVTTSKGEKPVREAVADDNW----LNTEFITTVQQRGAAII 236 (332)
Q Consensus 161 ~~r~~~~~a~~~~v~~~~v~~~~V~G~hg~~~v~~~s~~~v~~~~~~~p~~~~~~~~~~----~~~~~~~~v~~~~~~i~ 236 (332)
+.|+++++|+++|+++.+|+.+ |||+||++++|+||++++ +|+|+.+++.+ .| ..+++.+++++++++|+
T Consensus 154 ~~R~~~~la~~lgv~~~~v~~~-v~G~HG~t~~p~~s~~~v----~g~p~~~~~~~-~~~~~~~~~~i~~~v~~~g~eIi 227 (324)
T 3gvi_A 154 SARFRYFLSEEFNVSVEDVTVF-VLGGHGDSMVPLARYSTV----AGIPLPDLVKM-GWTSQDKLDKIIQRTRDGGAEIV 227 (324)
T ss_dssp HHHHHHHHHHHHTCCGGGEECC-EEECSGGGEEECGGGCEE----TTEEHHHHHHT-TSSCHHHHHHHHHHHHTHHHHHH
T ss_pred HHHHHHHHHHHhCcCHHHCeEE-EEcCCCCceeeehhhCeE----CCEEHHHhhhc-cCCCHHHHHHHHHHHHHhHHHHH
Confidence 9999999999999999999987 589999999999999999 99999998732 23 34679999999999999
Q ss_pred HhcCC-cchHHHHHHHHHHHHHHHcCCCCCcEEEEEEeecCCCCCCCCeEEEEeEEEe-CCeEEEecCCCCCHHHHHHHH
Q 019990 237 KARKL-SSALSAASSACDHIRDWVLGTPKGTWVSMGVYSDGSYGIPEGLIYSFPVTCE-KGEWSIVKGLKVDEFSRAKMD 314 (332)
Q Consensus 237 ~~~g~-~~~~~~a~a~~~~i~~~~~~~~~~~i~~~~v~~~g~yg~~~~~~~s~Pv~~~-~G~~~~~~~~~l~~~E~~~l~ 314 (332)
+.||. ++++++|+++++++.+++.+ +++|+|+|++++|+||++ ++|||+||++| +|++++++ ++||++|+++|+
T Consensus 228 ~~~gkgsa~~~~a~a~~~~~~ail~~--~~~v~~~s~~~~g~yg~~-~v~~s~P~~~g~~Gv~~v~~-l~L~~~E~~~l~ 303 (324)
T 3gvi_A 228 GLLKTGSAFYAPAASAIQMAESYLKD--KKRVLPVAAQLSGQYGVK-DMYVGVPTVIGANGVERIIE-IDLDKDEKAQFD 303 (324)
T ss_dssp HHHSSCCCCHHHHHHHHHHHHHHHTT--CCEEEEEEEEEESGGGCE-EEEEEEEEEEETTEEEEECC-CCCCHHHHHHHH
T ss_pred HhcCCCcHHHHHHHHHHHHHHHHHcC--CCcEEEEEEEecCccCCC-ceEEEEEEEEeCCEEEEecC-CCCCHHHHHHHH
Confidence 97654 44578899999988877664 579999999999999994 99999999999 99999995 999999999999
Q ss_pred HHHHHHHHHHHHHhh
Q 019990 315 ATAEELAEEKTLAYS 329 (332)
Q Consensus 315 ~s~~~i~~~~~~~~~ 329 (332)
+|++.|++.++....
T Consensus 304 ~s~~~l~~~~~~~~~ 318 (324)
T 3gvi_A 304 KSVASVAGLCEACIG 318 (324)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhh
Confidence 999999999988764
|
| >1ez4_A Lactate dehydrogenase; rossmann fold, oxidoreductase; HET: NAD; 2.30A {Lactobacillus pentosus} SCOP: c.2.1.5 d.162.1.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=2.8e-58 Score=423.58 Aligned_cols=308 Identities=20% Similarity=0.328 Sum_probs=265.4
Q ss_pred CCcEEEEEcCCChhHHHHHHHHHhcccCCCCCCeEEEEEecccchhhhhhhHhhhhhhccCCccceEEeCCHHHHhCCCc
Q 019990 4 NPLRVLVTGAAGQIGYALVPMIARGIMLGPDQPVILHMLDIEPAAEALNGVKMELIDAAFPLLKGVVATTDVVEACKDVN 83 (332)
Q Consensus 4 ~~~kI~VtGaaG~IGs~l~~~L~~~~~~~~~~~~~i~l~D~~~~~~~~~~~~~dl~~~~~~~~~~v~~~~~~~~a~~~aD 83 (332)
+.+||+|+|| |.||++++..|+..++++ +|+|+|++. +++++.++|+.|.. ++..++....+.++++++||
T Consensus 4 ~~~KI~IiGa-G~vG~~~a~~l~~~~~~~-----el~L~Di~~--~~~~g~~~dl~~~~-~~~~~~~v~~~~~~a~~~aD 74 (318)
T 1ez4_A 4 NHQKVVLVGD-GAVGSSYAFAMAQQGIAE-----EFVIVDVVK--DRTKGDALDLEDAQ-AFTAPKKIYSGEYSDCKDAD 74 (318)
T ss_dssp TBCEEEEECC-SHHHHHHHHHHHHHTCCS-----EEEEECSSH--HHHHHHHHHHHGGG-GGSCCCEEEECCGGGGTTCS
T ss_pred CCCEEEEECC-CHHHHHHHHHHHcCCCCC-----EEEEEeCCc--hHHHHHHHHHHHHH-HhcCCeEEEECCHHHhCCCC
Confidence 4479999995 999999999999888754 999999953 57889999999875 33345554446688999999
Q ss_pred EEEEecCCCCCCCCChhHHHhhhHHHHHHHHHHHHhhcCCCcEEEEEeCChhhHHHHHHHHCCCCCCCcEEEe-ecccHH
Q 019990 84 IAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEKHAAPNCKVLVVANPANTNALILKEFAPSIPAKNITCL-TRLDHN 162 (332)
Q Consensus 84 iVi~~ag~~~~~~~~~~~~~~~N~~~~~~i~~~i~~~~~~~~~viv~snp~~~~~~~~~~~~~~~~~~~i~~~-t~l~~~ 162 (332)
+||+++|.++++|++|.+++..|+++++++++.+++++ |+++++++|||++.+++++++. +++|++|++|. |.+|+.
T Consensus 75 vVii~ag~~~~~g~~R~dl~~~n~~i~~~i~~~i~~~~-p~a~iiv~tNPv~~~t~~~~k~-s~~p~~rviG~gt~LD~~ 152 (318)
T 1ez4_A 75 LVVITAGAPQKPGESRLDLVNKNLNILSSIVKPVVDSG-FDGIFLVAANPVDILTYATWKF-SGFPKERVIGSGTSLDSS 152 (318)
T ss_dssp EEEECCCC----------CHHHHHHHHHHHHHHHHHTT-CCSEEEECSSSHHHHHHHHHHH-HCCCGGGEEECTTHHHHH
T ss_pred EEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhC-CCeEEEEeCCcHHHHHHHHHHH-cCCCHHHEEeccccchHH
Confidence 99999999999999999999999999999999999997 9999999999999999999998 68999997665 999999
Q ss_pred HHHHHHHHHcCCCCCCeeeeEEEecCCCceeecccCcccccCCCCcchhhhcccccc---chhHHHHHHHhhHHHHHHhc
Q 019990 163 RAMGQISERLKVHVSDVKNVIIWGNHSSTQYPDVNHATVTTSKGEKPVREAVADDNW---LNTEFITTVQQRGAAIIKAR 239 (332)
Q Consensus 163 r~~~~~a~~~~v~~~~v~~~~V~G~hg~~~v~~~s~~~v~~~~~~~p~~~~~~~~~~---~~~~~~~~v~~~~~~i~~~~ 239 (332)
|+++++|+++|+++.+|+.+ |||+||++++|+||++++ +|+|+.+++.+..| ..+++.+++++++++|++.|
T Consensus 153 R~~~~la~~lgv~~~~v~~~-v~G~HG~t~~p~~s~~~v----~g~~~~~~~~~~~~~~~~~~~~~~~v~~~g~eii~~k 227 (318)
T 1ez4_A 153 RLRVALGKQFNVDPRSVDAY-IMGEHGDSEFAAYSTATI----GTRPVRDVAKEQGVSDDDLAKLEDGVRNKAYDIINLK 227 (318)
T ss_dssp HHHHHHHHHHTCCGGGEECC-EESSSSSSCEECGGGCEE----TTEEHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCcChhHEEEE-EecccCCceEEEehhhcC----CCeeHHHHhhccCCCHHHHHHHHHHHHHhhhhheeCC
Confidence 99999999999999999976 699999999999999999 99999998764445 34689999999999999999
Q ss_pred CCcchHHHHHHHHHHHHHHHcCCCCCcEEEEEEeecCCCCCCCCeEEEEeEEEe-CCeEEEecCCCCCHHHHHHHHHHHH
Q 019990 240 KLSSALSAASSACDHIRDWVLGTPKGTWVSMGVYSDGSYGIPEGLIYSFPVTCE-KGEWSIVKGLKVDEFSRAKMDATAE 318 (332)
Q Consensus 240 g~~~~~~~a~a~~~~i~~~~~~~~~~~i~~~~v~~~g~yg~~~~~~~s~Pv~~~-~G~~~~~~~~~l~~~E~~~l~~s~~ 318 (332)
|.++ +++|.++++++.+++.+ +++++|++++++|+||++ ++|||+||++| +|++++++ ++|+++|+++|++|++
T Consensus 228 g~t~-~~~a~a~~~~~~ai~~~--~~~~~~vs~~~~G~yg~~-~~~~~vP~~ig~~Gv~~i~~-~~L~~~e~~~l~~s~~ 302 (318)
T 1ez4_A 228 GATF-YGIGTALMRISKAILRD--ENAVLPVGAYMDGQYGLN-DIYIGTPAIIGGTGLKQIIE-SPLSADELKKMQDSAA 302 (318)
T ss_dssp SCCC-HHHHHHHHHHHHHHHTT--CCEEEEEEEEEESGGGCE-EEEEEEEEEEETTEEEEECC-CCCCHHHHHHHHHHHH
T ss_pred Ccch-HHHHHHHHHHHHHHHhC--CCcEEEEEEeecCccCCC-ceEEEEEEEEeCCeeEEEcC-CCCCHHHHHHHHHHHH
Confidence 9665 46689999988887764 578999999999999996 99999999999 99999996 9999999999999999
Q ss_pred HHHHHHHHHhhhhC
Q 019990 319 ELAEEKTLAYSCLN 332 (332)
Q Consensus 319 ~i~~~~~~~~~~~~ 332 (332)
.|++.++.+.++|+
T Consensus 303 ~l~~~~~~~~~~~~ 316 (318)
T 1ez4_A 303 TLKKVLNDGLAELE 316 (318)
T ss_dssp HHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHhh
Confidence 99999999988875
|
| >2zqz_A L-LDH, L-lactate dehydrogenase; oxidoreductase, rossmann fold, cytoplasm, glycolysis, NAD, phosphoprotein; 2.50A {Lactobacillus casei} PDB: 2zqy_A 3vkv_A* 1llc_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=9e-58 Score=421.29 Aligned_cols=308 Identities=22% Similarity=0.334 Sum_probs=267.1
Q ss_pred CCcEEEEEcCCChhHHHHHHHHHhcccCCCCCCeEEEEEecccchhhhhhhHhhhhhhccCCccceEEeCCHHHHhCCCc
Q 019990 4 NPLRVLVTGAAGQIGYALVPMIARGIMLGPDQPVILHMLDIEPAAEALNGVKMELIDAAFPLLKGVVATTDVVEACKDVN 83 (332)
Q Consensus 4 ~~~kI~VtGaaG~IGs~l~~~L~~~~~~~~~~~~~i~l~D~~~~~~~~~~~~~dl~~~~~~~~~~v~~~~~~~~a~~~aD 83 (332)
+++||+|+|| |.||++++..|+..++++ +|+|+|++. +++++.++|+.|.. ++..++....+.++++++||
T Consensus 8 ~~~KI~IiGa-G~vG~~la~~l~~~~~~~-----el~L~Di~~--~~~~g~~~dl~~~~-~~~~~~~i~~~~~~a~~~aD 78 (326)
T 2zqz_A 8 DHQKVILVGD-GAVGSSYAYAMVLQGIAQ-----EIGIVDIFK--DKTKGDAIDLSNAL-PFTSPKKIYSAEYSDAKDAD 78 (326)
T ss_dssp CCCEEEEECC-SHHHHHHHHHHHHHTCCS-----EEEEECSCH--HHHHHHHHHHHTTG-GGSCCCEEEECCGGGGGGCS
T ss_pred CCCEEEEECC-CHHHHHHHHHHHcCCCCC-----EEEEEeCCc--hHhHHHHHHHHHHH-HhcCCeEEEECCHHHhCCCC
Confidence 4689999995 999999999998888754 999999953 57889999999865 33345554446688999999
Q ss_pred EEEEecCCCCCCCCChhHHHhhhHHHHHHHHHHHHhhcCCCcEEEEEeCChhhHHHHHHHHCCCCCCCcEEEe-ecccHH
Q 019990 84 IAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEKHAAPNCKVLVVANPANTNALILKEFAPSIPAKNITCL-TRLDHN 162 (332)
Q Consensus 84 iVi~~ag~~~~~~~~~~~~~~~N~~~~~~i~~~i~~~~~~~~~viv~snp~~~~~~~~~~~~~~~~~~~i~~~-t~l~~~ 162 (332)
+||+++|.++++|++|.+++..|+++++++++.+++++ |+++++++|||++.++++++++ +++|++|++|. |.||+.
T Consensus 79 vVii~ag~~~k~g~~R~dl~~~n~~i~~~i~~~i~~~~-p~a~iiv~tNPv~~~t~~~~k~-s~~p~~rviG~gt~LD~~ 156 (326)
T 2zqz_A 79 LVVITAGAPQKPGETRLDLVNKNLKILKSIVDPIVDSG-FNGIFLVAANPVDILTYATWKL-SGFPKNRVVGSGTSLDTA 156 (326)
T ss_dssp EEEECCCCC-----CHHHHHHHHHHHHHHHHHHHHHHT-CCSEEEECSSSHHHHHHHHHHH-HCCCGGGEEECTTHHHHH
T ss_pred EEEEcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHC-CCeEEEEeCCcHHHHHHHHHHH-cCCCHHHEEEccccchHH
Confidence 99999999999999999999999999999999999998 9999999999999999999998 68999997665 999999
Q ss_pred HHHHHHHHHcCCCCCCeeeeEEEecCCCceeecccCcccccCCCCcchhhhcc-ccccc---hhHHHHHHHhhHHHHHHh
Q 019990 163 RAMGQISERLKVHVSDVKNVIIWGNHSSTQYPDVNHATVTTSKGEKPVREAVA-DDNWL---NTEFITTVQQRGAAIIKA 238 (332)
Q Consensus 163 r~~~~~a~~~~v~~~~v~~~~V~G~hg~~~v~~~s~~~v~~~~~~~p~~~~~~-~~~~~---~~~~~~~v~~~~~~i~~~ 238 (332)
|+++++|+++|+++.+|+.+ |||+||++++|+||++++ +|+|+.+++. +..|. .+++.+++++++++|++.
T Consensus 157 R~~~~la~~lgv~~~~v~~~-v~G~HG~t~~p~~s~~~v----~g~~~~e~~~~~~~~~~~~~~~i~~~v~~~g~eii~~ 231 (326)
T 2zqz_A 157 RFRQSIAEMVNVDARSVHAY-IMGEHGDTEFPVWSHANI----GGVTIAEWVKAHPEIKEDKLVKMFEDVRDAAYEIIKL 231 (326)
T ss_dssp HHHHHHHHHHTCCGGGEECC-EEBSSSTTCEECGGGCEE----TTEEHHHHHHHCTTSCHHHHHHHHHHHHTHHHHHHHH
T ss_pred HHHHHHHHHhCCChhheEEE-EecccCCceEeehhhceE----CCEEHHHhhcccccCCHHHHHHHHHHHHHhHHHHHHc
Confidence 99999999999999999976 699999999999999999 9999999875 33453 468999999999999999
Q ss_pred cCCcchHHHHHHHHHHHHHHHcCCCCCcEEEEEEeecCCCCCCCCeEEEEeEEEe-CCeEEEecCCCCCHHHHHHHHHHH
Q 019990 239 RKLSSALSAASSACDHIRDWVLGTPKGTWVSMGVYSDGSYGIPEGLIYSFPVTCE-KGEWSIVKGLKVDEFSRAKMDATA 317 (332)
Q Consensus 239 ~g~~~~~~~a~a~~~~i~~~~~~~~~~~i~~~~v~~~g~yg~~~~~~~s~Pv~~~-~G~~~~~~~~~l~~~E~~~l~~s~ 317 (332)
||.++ +++|+++++++.+++.+ +++++|++++++|+||++ ++|||+||+++ +|++++++ ++|+++|+++|++|+
T Consensus 232 kG~t~-~~~a~aa~~~~~ai~~~--~~~~~~vsv~~~G~yg~~-~~~~svP~~ig~~Gv~~i~~-~~L~~~e~~~l~~s~ 306 (326)
T 2zqz_A 232 KGATF-YGIATALARISKAILND--ENAVLPLSVYMDGQYGLN-DIYIGTPAVINRNGIQNILE-IPLTDHEEESMQKSA 306 (326)
T ss_dssp HSCCC-HHHHHHHHHHHHHHHTT--CCEEEEEEEEEESGGGCE-EEEEEEEEEEETTEEEEECC-CCCCHHHHHHHHHHH
T ss_pred CCCcH-HHHHHHHHHHHHHHHhC--CCcEEEEEEeccCccCCC-ceEEEEEEEEcCCeeEEEec-CCCCHHHHHHHHHHH
Confidence 99665 46688999988887774 578999999999999997 99999999999 99999996 999999999999999
Q ss_pred HHHHHHHHHHhhhhC
Q 019990 318 EELAEEKTLAYSCLN 332 (332)
Q Consensus 318 ~~i~~~~~~~~~~~~ 332 (332)
+.|++.++.+.++|+
T Consensus 307 ~~l~~~~~~~~~~~~ 321 (326)
T 2zqz_A 307 SQLKKVLTDAFAKND 321 (326)
T ss_dssp HHHHHHHHHHC----
T ss_pred HHHHHHHHHHHHhhh
Confidence 999999999988875
|
| >1y7t_A Malate dehydrogenase; NAD-dependent-MDH-NADPH complex, oxidoreductase; HET: NDP; 1.65A {Thermus thermophilus} SCOP: c.2.1.5 d.162.1.1 PDB: 1iz9_A* 2cvq_A* 1bmd_A* 1bdm_A* 1wze_A* 1wzi_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=5.6e-57 Score=418.10 Aligned_cols=323 Identities=54% Similarity=0.847 Sum_probs=280.5
Q ss_pred CCCCcEEEEEcCCChhHHHHHHHHHhcccCCCCCCeEEEEEecccchhhhhhhHhhhhhhccCCccceEEeCCHHHHhCC
Q 019990 2 AKNPLRVLVTGAAGQIGYALVPMIARGIMLGPDQPVILHMLDIEPAAEALNGVKMELIDAAFPLLKGVVATTDVVEACKD 81 (332)
Q Consensus 2 ~~~~~kI~VtGaaG~IGs~l~~~L~~~~~~~~~~~~~i~l~D~~~~~~~~~~~~~dl~~~~~~~~~~v~~~~~~~~a~~~ 81 (332)
++++|||+||||+||||++++..|+..++.+.+...+|+++|+....+++.+..+|+.|..+++..++....++.+++++
T Consensus 1 m~~~mkVlVtGaaGfIG~~l~~~L~~~g~~~~~~~~ev~l~D~~~~~~~~~g~~~dl~~~~~~~~~di~~~~~~~~a~~~ 80 (327)
T 1y7t_A 1 MKAPVRVAVTGAAGQIGYSLLFRIAAGEMLGKDQPVILQLLEIPQAMKALEGVVMELEDCAFPLLAGLEATDDPKVAFKD 80 (327)
T ss_dssp CCCCEEEEESSTTSHHHHHHHHHHHTTTTTCTTCCEEEEEECCGGGHHHHHHHHHHHHTTTCTTEEEEEEESCHHHHTTT
T ss_pred CCCCCEEEEECCCCHHHHHHHHHHHhCCCCCCCCCCEEEEEeCCCchhhccchhhhhhcccccccCCeEeccChHHHhCC
Confidence 04567999999999999999999998776543333589999986432345677778877544444677777788899999
Q ss_pred CcEEEEecCCCCCCCCChhHHHhhhHHHHHHHHHHHHhhcCCCcEEEEEeCChhhHHHHHHHHCCCCCCCcEEEeecccH
Q 019990 82 VNIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEKHAAPNCKVLVVANPANTNALILKEFAPSIPAKNITCLTRLDH 161 (332)
Q Consensus 82 aDiVi~~ag~~~~~~~~~~~~~~~N~~~~~~i~~~i~~~~~~~~~viv~snp~~~~~~~~~~~~~~~~~~~i~~~t~l~~ 161 (332)
+|+|||+||.++.+++++.+++..|+.+++++++++++++.|+++++++|||++.++++.++..++++|.++|+.|++++
T Consensus 81 ~D~Vih~Ag~~~~~~~~~~~~~~~Nv~~t~~l~~a~~~~~~~~~~vvv~snp~~~~~~~~~~~~~~~~p~~~yg~tkl~~ 160 (327)
T 1y7t_A 81 ADYALLVGAAPRKAGMERRDLLQVNGKIFTEQGRALAEVAKKDVKVLVVGNPANTNALIAYKNAPGLNPRNFTAMTRLDH 160 (327)
T ss_dssp CSEEEECCCCCCCTTCCHHHHHHHHHHHHHHHHHHHHHHSCTTCEEEECSSSHHHHHHHHHHTCTTSCGGGEEECCHHHH
T ss_pred CCEEEECCCcCCCCCCCHHHHHHHHHHHHHHHHHHHHhhcCCCeEEEEeCCchhhhHHHHHHHcCCCChhheeccchHHH
Confidence 99999999999888888999999999999999999999853678999999999988888877522688889999999999
Q ss_pred HHHHHHHHHHcCCCCCCeeeeEEEecCCCceeecccCcccccCCCCcchhhhccccccchhHHHHHHHhhHHHHHHhcCC
Q 019990 162 NRAMGQISERLKVHVSDVKNVIIWGNHSSTQYPDVNHATVTTSKGEKPVREAVADDNWLNTEFITTVQQRGAAIIKARKL 241 (332)
Q Consensus 162 ~r~~~~~a~~~~v~~~~v~~~~V~G~hg~~~v~~~s~~~v~~~~~~~p~~~~~~~~~~~~~~~~~~v~~~~~~i~~~~g~ 241 (332)
+|+++.+++++|+++..+|.++|||+|+++++|.|+++.+ +|+|+.+++. +.|..+++.+++++++++|++.||.
T Consensus 161 er~~~~~a~~~g~~~~~vr~~~V~G~h~~~~~~~~~~~~~----~g~~l~~~~~-~~~~~~~~~~~v~~~g~~ii~~kg~ 235 (327)
T 1y7t_A 161 NRAKAQLAKKTGTGVDRIRRMTVWGNHSSTMFPDLFHAEV----DGRPALELVD-MEWYEKVFIPTVAQRGAAIIQARGA 235 (327)
T ss_dssp HHHHHHHHHHHTCCGGGEECCEEEBCSSTTCEEECSSCEE----TTEEGGGTSC-HHHHHHTHHHHHHHHHHHHHHHHSS
T ss_pred HHHHHHHHHHhCcChhheeeeEEEcCCCCeEEEEeeeeee----CCeeHHHhcc-chhHHHHHHHHHHHHHHHHHHccCC
Confidence 9999999999999999999888999999999999999999 9999998764 3565688999999999999999999
Q ss_pred cchHHHHHHHHHHHHHHHcCCCCCcEEEEEEeecCCCCCCCCeEEEEeEEEeCCeEEEecCCCCCHHHHHHHHHHHHHHH
Q 019990 242 SSALSAASSACDHIRDWVLGTPKGTWVSMGVYSDGSYGIPEGLIYSFPVTCEKGEWSIVKGLKVDEFSRAKMDATAEELA 321 (332)
Q Consensus 242 ~~~~~~a~a~~~~i~~~~~~~~~~~i~~~~v~~~g~yg~~~~~~~s~Pv~~~~G~~~~~~~~~l~~~E~~~l~~s~~~i~ 321 (332)
++++++|+++++++.+++.+.++++++|+|++++|+||+|+++|||+||++.+|++++++.++|+++|+++|++|++.|+
T Consensus 236 ~~~~~~a~a~~~~~~~i~~~~~~~~~~~~~~~~~g~yg~~~~~~~~~P~~i~~G~~~i~~~~~l~~~e~~~l~~s~~~l~ 315 (327)
T 1y7t_A 236 SSAASAANAAIEHIRDWALGTPEGDWVSMAVPSQGEYGIPEGIVYSFPVTAKDGAYRVVEGLEINEFARKRMEITAQELL 315 (327)
T ss_dssp CCHHHHHHHHHHHHHHHHTBCCTTCCEEEEEECSSGGGCCTTSEEEEEEEEETTEEEECCCCCCCHHHHHHHHHHHHHHH
T ss_pred CchHHHHHHHHHHHHHHHcCCCCCeEEEEEEEecCccCCCCCeEEEEEEEEcCCeEEecCCCCCCHHHHHHHHHHHHHHH
Confidence 88888888999999888775325789999999999999999999999999999999998658999999999999999999
Q ss_pred HHHHHHhh
Q 019990 322 EEKTLAYS 329 (332)
Q Consensus 322 ~~~~~~~~ 329 (332)
+.++.+.+
T Consensus 316 ~~~~~~~~ 323 (327)
T 1y7t_A 316 DEMEQVKA 323 (327)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHh
Confidence 99998865
|
| >1o6z_A MDH, malate dehydrogenase; halophilic, ION-binding, protein-solvent interaction, oxidoreductase; HET: NAD; 1.95A {Haloarcula marismortui} SCOP: c.2.1.5 d.162.1.1 PDB: 1gt2_A* 2x0r_A* 2j5k_A 2j5q_A 2j5r_A 1d3a_A 1hlp_A* 2hlp_A | Back alignment and structure |
|---|
Probab=100.00 E-value=4.4e-57 Score=413.72 Aligned_cols=300 Identities=21% Similarity=0.305 Sum_probs=264.8
Q ss_pred cEEEEEcCCChhHHHHHHHHHhcccCCCCCCeEEEEEecccchhhhhhhHhhhhhhccCCccceEEeCCHHHHhCCCcEE
Q 019990 6 LRVLVTGAAGQIGYALVPMIARGIMLGPDQPVILHMLDIEPAAEALNGVKMELIDAAFPLLKGVVATTDVVEACKDVNIA 85 (332)
Q Consensus 6 ~kI~VtGaaG~IGs~l~~~L~~~~~~~~~~~~~i~l~D~~~~~~~~~~~~~dl~~~~~~~~~~v~~~~~~~~a~~~aDiV 85 (332)
|||+||||+||||++++..|+..++.. +++|+|+..+.+++++..+|+.|... ...++....+.+++++++|+|
T Consensus 1 mKI~IiGAaG~vG~~l~~~L~~~~~~~-----el~L~Di~~~~~~~~~~~~dl~~~~~-~~~~~~v~~~~~~a~~~aDvV 74 (303)
T 1o6z_A 1 TKVSVVGAAGTVGAAAGYNIALRDIAD-----EVVFVDIPDKEDDTVGQAADTNHGIA-YDSNTRVRQGGYEDTAGSDVV 74 (303)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTCCS-----EEEEECCGGGHHHHHHHHHHHHHHHT-TTCCCEEEECCGGGGTTCSEE
T ss_pred CEEEEECCCChHHHHHHHHHHhCCCCC-----EEEEEcCCCChhhHHHHHHHHHHHHh-hCCCcEEEeCCHHHhCCCCEE
Confidence 589999999999999999998877643 89999983223457777889988754 333444333347889999999
Q ss_pred EEecCCCCCCCCChhHHHhhhHHHHHHHHHHHHhhcCCCcEEEEEeCChhhHHHHHHHHCCCCCCCcEEEe-ecccHHHH
Q 019990 86 VMVGGFPRKEGMERKDVMSKNVSIYKAQASALEKHAAPNCKVLVVANPANTNALILKEFAPSIPAKNITCL-TRLDHNRA 164 (332)
Q Consensus 86 i~~ag~~~~~~~~~~~~~~~N~~~~~~i~~~i~~~~~~~~~viv~snp~~~~~~~~~~~~~~~~~~~i~~~-t~l~~~r~ 164 (332)
||+||.+++++++|.+++..|+++++++++++++++ |+++++++|||++.+++++++. +++|++|++|. |.||+.|+
T Consensus 75 i~~ag~~~~~g~~r~dl~~~N~~i~~~i~~~i~~~~-p~~~viv~SNPv~~~~~~~~~~-~~~p~~rviG~gt~Ld~~r~ 152 (303)
T 1o6z_A 75 VITAGIPRQPGQTRIDLAGDNAPIMEDIQSSLDEHN-DDYISLTTSNPVDLLNRHLYEA-GDRSREQVIGFGGRLDSARF 152 (303)
T ss_dssp EECCCCCCCTTCCHHHHHHHHHHHHHHHHHHHHTTC-SCCEEEECCSSHHHHHHHHHHH-SSSCGGGEEECCHHHHHHHH
T ss_pred EEcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHC-CCcEEEEeCChHHHHHHHHHHH-cCCCHHHeeecccchhHHHH
Confidence 999999999999999999999999999999999997 8999999999999999999998 78999997777 99999999
Q ss_pred HHHHHHHcCCCCCCeeeeEEEecCCCceeecccCcccccCCCCcchhhhccccccchhHHHHHHHhhHHHHHHhcCCcch
Q 019990 165 MGQISERLKVHVSDVKNVIIWGNHSSTQYPDVNHATVTTSKGEKPVREAVADDNWLNTEFITTVQQRGAAIIKARKLSSA 244 (332)
Q Consensus 165 ~~~~a~~~~v~~~~v~~~~V~G~hg~~~v~~~s~~~v~~~~~~~p~~~~~~~~~~~~~~~~~~v~~~~~~i~~~~g~~~~ 244 (332)
++++|+++|+++.+|+.+ |||+||++++|+||++.+ +|.| +++.++.| +++.+++++++++|++.||.++
T Consensus 153 ~~~la~~l~v~~~~v~~~-v~G~HG~~~~p~~s~~~v----~g~p--~~~~~~~~--~~~~~~v~~~g~eii~~kg~~~- 222 (303)
T 1o6z_A 153 RYVLSEEFDAPVQNVEGT-ILGEHGDAQVPVFSKVSV----DGTD--PEFSGDEK--EQLLGDLQESAMDVIERKGATE- 222 (303)
T ss_dssp HHHHHHHHTCCGGGEECC-EEECSSTTEEECGGGCEE----TTBC--CCCCHHHH--HHHHHHHHHHHHHHHTTTSSCC-
T ss_pred HHHHHHHhCcCHHHeEEE-EEeCCCCccccCCccccc----CCcC--ccCCHHHH--HHHHHHHHHHhHHHHhcCCChH-
Confidence 999999999999999976 699999999999999999 9999 77655543 7899999999999999999665
Q ss_pred HHHHHHHHHHHHHHHcCCCCCcEEEEEEeecCCCCCCCCeEEEEeEEEe-CCeEEEecCCCCCHHHHHHHHHHHHHHHHH
Q 019990 245 LSAASSACDHIRDWVLGTPKGTWVSMGVYSDGSYGIPEGLIYSFPVTCE-KGEWSIVKGLKVDEFSRAKMDATAEELAEE 323 (332)
Q Consensus 245 ~~~a~a~~~~i~~~~~~~~~~~i~~~~v~~~g~yg~~~~~~~s~Pv~~~-~G~~~~~~~~~l~~~E~~~l~~s~~~i~~~ 323 (332)
+++|.++++++.+++.+ +++++|++++++|+||+ +++|||+||++| +|++++++ ++|+++|+++|++|++.|++.
T Consensus 223 ~~~a~a~~~~~~ai~~~--~~~~~~~~~~~~g~~g~-~~~~~~~P~~ig~~Gv~~i~~-~~l~~~e~~~l~~s~~~l~~~ 298 (303)
T 1o6z_A 223 WGPARGVAHMVEAILHD--TGEVLPASVKLEGEFGH-EDTAFGVPVSLGSNGVEEIVE-WDLDDYEQDLMADAAEKLSDQ 298 (303)
T ss_dssp HHHHHHHHHHHHHHHTT--CCCEEEEEEEEESGGGC-EEEEEEEEEEEETTEEEEECC-CCCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhC--CCCEEEEEEecCCccCC-cceEEEEEEEEeCCeeEEecC-CCCCHHHHHHHHHHHHHHHHH
Confidence 47899999988887774 47899999999999999 899999999999 99999996 999999999999999999999
Q ss_pred HHHH
Q 019990 324 KTLA 327 (332)
Q Consensus 324 ~~~~ 327 (332)
++..
T Consensus 299 ~~~~ 302 (303)
T 1o6z_A 299 YDKI 302 (303)
T ss_dssp HHHH
T ss_pred HHhh
Confidence 8864
|
| >3hhp_A Malate dehydrogenase; MDH, citric acid cycle, TCA cycle, NAD, oxidoreductase, tricarboxylic acid cycle; 1.45A {Escherichia coli k-12} PDB: 2pwz_A 2cmd_A* 1emd_A* 1ib6_A* 1ie3_A* 4e0b_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.8e-56 Score=409.05 Aligned_cols=297 Identities=22% Similarity=0.329 Sum_probs=255.2
Q ss_pred cEEEEEcCCChhHHHHHHHHHhc-ccCCCCCCeEEEEEecccchhhhhhhHhhhhhhccCCccceEEe--CCHHHHhCCC
Q 019990 6 LRVLVTGAAGQIGYALVPMIARG-IMLGPDQPVILHMLDIEPAAEALNGVKMELIDAAFPLLKGVVAT--TDVVEACKDV 82 (332)
Q Consensus 6 ~kI~VtGaaG~IGs~l~~~L~~~-~~~~~~~~~~i~l~D~~~~~~~~~~~~~dl~~~~~~~~~~v~~~--~~~~~a~~~a 82 (332)
|||+|+||+|.||+++++.|..+ ++. .+++|+|+++ ++.|..+||.|.. ....+... ++.+++++||
T Consensus 1 mKV~IiGAaG~VG~~~a~~L~~~~~~~-----~el~L~Di~~---~~~G~a~Dl~~~~--~~~~v~~~~~~~~~~~~~~a 70 (312)
T 3hhp_A 1 MKVAVLGAAGGIGQALALLLKTQLPSG-----SELSLYDIAP---VTPGVAVDLSHIP--TAVKIKGFSGEDATPALEGA 70 (312)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHHSCTT-----EEEEEECSST---THHHHHHHHHTSC--SSEEEEEECSSCCHHHHTTC
T ss_pred CEEEEECCCCHHHHHHHHHHHhCCCCC-----ceEEEEecCC---CchhHHHHhhCCC--CCceEEEecCCCcHHHhCCC
Confidence 58999999999999999999876 553 3999999964 4679999999863 22234332 3567899999
Q ss_pred cEEEEecCCCCCCCCChhHHHhhhHHHHHHHHHHHHhhcCCCcEEEEEeCChhhHHHH---HHHHCCCC-CCCcEEEeec
Q 019990 83 NIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEKHAAPNCKVLVVANPANTNALI---LKEFAPSI-PAKNITCLTR 158 (332)
Q Consensus 83 DiVi~~ag~~~~~~~~~~~~~~~N~~~~~~i~~~i~~~~~~~~~viv~snp~~~~~~~---~~~~~~~~-~~~~i~~~t~ 158 (332)
|+||++||.|+++|++|.|++..|+++++++++++.+++ |+++++++|||+|.++++ +++. +++ |++|++|.|.
T Consensus 71 Divii~ag~~rkpG~~R~dll~~N~~I~~~i~~~i~~~~-p~a~vlvvtNPvd~~t~~a~~~~k~-sg~~p~~rv~G~~~ 148 (312)
T 3hhp_A 71 DVVLISAGVARKPGMDRSDLFNVNAGIVKNLVQQVAKTC-PKACIGIITNPVNTTVAIAAEVLKK-AGVYDKNKLFGVTT 148 (312)
T ss_dssp SEEEECCSCSCCTTCCHHHHHHHHHHHHHHHHHHHHHHC-TTSEEEECSSCHHHHHHHHHHHHHH-TTCCCTTSEEECCH
T ss_pred CEEEEeCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHC-CCcEEEEecCcchhHHHHHHHHHHH-cCCCCcceEEEEec
Confidence 999999999999999999999999999999999999998 899999999999999999 6776 676 9999989999
Q ss_pred ccHHHHHHHHHHHcCCCCCCeeeeEEEecC-CCceeecccCcccccCCCCcchhhhccccccchhHHHHHHHhhHHHHHH
Q 019990 159 LDHNRAMGQISERLKVHVSDVKNVIIWGNH-SSTQYPDVNHATVTTSKGEKPVREAVADDNWLNTEFITTVQQRGAAIIK 237 (332)
Q Consensus 159 l~~~r~~~~~a~~~~v~~~~v~~~~V~G~h-g~~~v~~~s~~~v~~~~~~~p~~~~~~~~~~~~~~~~~~v~~~~~~i~~ 237 (332)
||+.|+++++|+++|+++.+|+.+ |||+| |++++|+||++ +|.|+. +++| ++|.+++|+++++|++
T Consensus 149 LD~~R~~~~la~~lgv~~~~v~~~-V~G~Hsg~t~vp~~S~~------~g~~~~----~~~~--~~i~~~v~~~g~eIi~ 215 (312)
T 3hhp_A 149 LDIIRSNTFVAELKGKQPGEVEVP-VIGGHSGVTILPLLSQV------PGVSFT----EQEV--ADLTKRIQNAGTEVVE 215 (312)
T ss_dssp HHHHHHHHHHHHHHTCCGGGCCCC-EEECSSGGGEEECGGGC------TTCCCC----HHHH--HHHHHHHHTHHHHHHH
T ss_pred hhHHHHHHHHHHHhCcChhHccee-EEeccCCCceeeecccC------CCCCCC----HHHH--HHHHHHHHhhhHHHHh
Confidence 999999999999999999999976 69999 78999999986 345543 3334 7899999999999999
Q ss_pred hc--CCcchHHHHHHHHHHHHHHH--cCCCCCcEEEEEEeecCCCCCCCCeEEEEeEEEe-CCeEEEecCC-CCCHHHHH
Q 019990 238 AR--KLSSALSAASSACDHIRDWV--LGTPKGTWVSMGVYSDGSYGIPEGLIYSFPVTCE-KGEWSIVKGL-KVDEFSRA 311 (332)
Q Consensus 238 ~~--g~~~~~~~a~a~~~~i~~~~--~~~~~~~i~~~~v~~~g~yg~~~~~~~s~Pv~~~-~G~~~~~~~~-~l~~~E~~ 311 (332)
.| ++++++++|+|+++++.+++ +. ++++++|+| +++|+ |. .++|||+||++| +|++++++ + +||++|++
T Consensus 216 ~k~g~gst~~s~a~a~~~~~~ai~~~l~-~~~~v~~~s-~~~g~-g~-~~v~~s~P~~~g~~Gv~~v~~-~~~L~~~E~~ 290 (312)
T 3hhp_A 216 AKAGGGSATLSMGQAAARFGLSLVRALQ-GEQGVVECA-YVEGD-GQ-YARFFSQPLLLGKNGVEERKS-IGTLSAFEQN 290 (312)
T ss_dssp HTTTSCCCCHHHHHHHHHHHHHHHHHHT-TCSSCEEEE-EEECC-CS-SCSEEEEEEEEETTEEEEECC-CCCCCHHHHH
T ss_pred hccCCCCchhHHHHHHHHHHHHHHHHcC-CCCceEEEE-EecCC-CC-cceEEEeEEEEeCCEEEEEcC-CCCCCHHHHH
Confidence 88 24567888999999887763 22 356899998 88876 43 578999999999 99999996 6 99999999
Q ss_pred HHHHHHHHHHHHHHHHhhhhC
Q 019990 312 KMDATAEELAEEKTLAYSCLN 332 (332)
Q Consensus 312 ~l~~s~~~i~~~~~~~~~~~~ 332 (332)
+|++|+++|++.++++++|..
T Consensus 291 ~l~~s~~~l~~~i~~g~~~~~ 311 (312)
T 3hhp_A 291 ALEGMLDTLKKDIALGEEFVN 311 (312)
T ss_dssp HHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHhh
Confidence 999999999999999999863
|
| >1y6j_A L-lactate dehydrogenase; southeast collaboratory for structural genomics, secsg, protein struc initiative, PSI, oxidoreductase; 3.01A {Clostridium thermocellum} SCOP: c.2.1.5 d.162.1.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=2.3e-56 Score=411.30 Aligned_cols=307 Identities=24% Similarity=0.337 Sum_probs=258.0
Q ss_pred CCCCCcEEEEEcCCChhHHHHHHHHHhcccCCCCCCeEEEEEecccchhhhhhhHhhhhhhccCCccceEEeCCHHHHhC
Q 019990 1 MAKNPLRVLVTGAAGQIGYALVPMIARGIMLGPDQPVILHMLDIEPAAEALNGVKMELIDAAFPLLKGVVATTDVVEACK 80 (332)
Q Consensus 1 m~~~~~kI~VtGaaG~IGs~l~~~L~~~~~~~~~~~~~i~l~D~~~~~~~~~~~~~dl~~~~~~~~~~v~~~~~~~~a~~ 80 (332)
|+++++||+|+|| |+||++++..|+..++++ +|+|+|++. +++++..+|+.|.. ++..++....+.+++++
T Consensus 3 m~~~~~KI~IiGa-G~vG~~~a~~l~~~~~~~-----ev~L~Di~~--~~~~g~~~dl~~~~-~~~~~~~i~~~~~~a~~ 73 (318)
T 1y6j_A 3 MVKSRSKVAIIGA-GFVGASAAFTMALRQTAN-----ELVLIDVFK--EKAIGEAMDINHGL-PFMGQMSLYAGDYSDVK 73 (318)
T ss_dssp ----CCCEEEECC-SHHHHHHHHHHHHTTCSS-----EEEEECCC-----CCHHHHHHTTSC-CCTTCEEEC--CGGGGT
T ss_pred CCCCCCEEEEECC-CHHHHHHHHHHHhCCCCC-----EEEEEeCCh--HHHHHHHHHHHHhH-HhcCCeEEEECCHHHhC
Confidence 5456789999995 999999999999888764 999999964 57888899998865 33344444334478899
Q ss_pred CCcEEEEecCCCCCCCCChhHHHhhhHHHHHHHHHHHHhhcCCCcEEEEEeCChhhHHHHHHHHCCCCCCCcEEEe-ecc
Q 019990 81 DVNIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEKHAAPNCKVLVVANPANTNALILKEFAPSIPAKNITCL-TRL 159 (332)
Q Consensus 81 ~aDiVi~~ag~~~~~~~~~~~~~~~N~~~~~~i~~~i~~~~~~~~~viv~snp~~~~~~~~~~~~~~~~~~~i~~~-t~l 159 (332)
+||+||+++|.|+++|++|.+++..|+++++++++.+.+++ |+++++++|||++.++++++++ +++|++|++|. |.+
T Consensus 74 ~aDvVii~~g~p~k~g~~r~dl~~~n~~i~~~i~~~i~~~~-p~a~viv~tNPv~~~~~~~~k~-s~~p~~rviG~gt~L 151 (318)
T 1y6j_A 74 DCDVIVVTAGANRKPGETRLDLAKKNVMIAKEVTQNIMKYY-NHGVILVVSNPVDIITYMIQKW-SGLPVGKVIGSGTVL 151 (318)
T ss_dssp TCSEEEECCCC------CHHHHHHHHHHHHHHHHHHHHHHC-CSCEEEECSSSHHHHHHHHHHH-HTCCTTTEEECTTHH
T ss_pred CCCEEEEcCCCCCCCCcCHHHHHHhhHHHHHHHHHHHHHhC-CCcEEEEecCcHHHHHHHHHHH-cCCCHHHEeccCCch
Confidence 99999999999999999999999999999999999999997 8999999999999999999998 68999997665 999
Q ss_pred cHHHHHHHHHHHcCCCCCCeeeeEEEecCCCceeecccCcccccCCCCcchhhhcccc--ccc---hhHHHHHHHhhHHH
Q 019990 160 DHNRAMGQISERLKVHVSDVKNVIIWGNHSSTQYPDVNHATVTTSKGEKPVREAVADD--NWL---NTEFITTVQQRGAA 234 (332)
Q Consensus 160 ~~~r~~~~~a~~~~v~~~~v~~~~V~G~hg~~~v~~~s~~~v~~~~~~~p~~~~~~~~--~~~---~~~~~~~v~~~~~~ 234 (332)
|+.|+++++|+++|+++.+|+.+ |||+||++++|+||++++ +|+|+.+++.+. .|. .+++.+++++++++
T Consensus 152 d~~r~~~~la~~lgv~~~~v~~~-v~G~HG~t~~p~~s~~~v----~g~~~~~~~~~~~~~~~~~~~~~~~~~v~~~g~e 226 (318)
T 1y6j_A 152 DSIRFRYLLSEKLGVDVKNVHGY-IIGEHGDSQLPLWSCTHI----AGKNINEYIDDPKCNFTEEDKKKIAEDVKTAGAT 226 (318)
T ss_dssp HHHHHHHHHHTTTTCCTTTEECC-EEBCSSSSCEECCTTCEE----TTBCSCCC-----------CCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCHHHeEEE-EecccCCcEeeeehhceE----CCEEHHHHhhhhcccCCHHHHHHHHHHHHHhhHh
Confidence 99999999999999999999985 699999999999999999 999999886542 343 57899999999999
Q ss_pred HHHhcCCcchHHHHHHHHHHHHHHHcCCCCCcEEEEEEeecCCCCCCCCeEEEEeEEEe-CCeEEEecCCCCCHHHHHHH
Q 019990 235 IIKARKLSSALSAASSACDHIRDWVLGTPKGTWVSMGVYSDGSYGIPEGLIYSFPVTCE-KGEWSIVKGLKVDEFSRAKM 313 (332)
Q Consensus 235 i~~~~g~~~~~~~a~a~~~~i~~~~~~~~~~~i~~~~v~~~g~yg~~~~~~~s~Pv~~~-~G~~~~~~~~~l~~~E~~~l 313 (332)
|++.||.+++ ++|.++++++.+++.+ +++++|++++++|+||+ +++|||+||+++ +|++++++ ++|+++|+++|
T Consensus 227 ii~~kg~t~~-~~a~a~~~~~~ai~~~--~~~~~~~~~~~~G~yg~-~~~~~~vP~~ig~~Gv~~i~~-~~L~~~e~~~l 301 (318)
T 1y6j_A 227 IIKNKGATYY-GIAVSINTIVETLLKN--QNTIRTVGTVINGMYGI-EDVAISLPSIVNSEGVQEVLQ-FNLTPEEEEAL 301 (318)
T ss_dssp HHHHTSCCCH-HHHHHHHHHHHHHHHT--CCCEECCEEEECSBTTB-CSEEEECCEEEETTEEEECCC-CCCCHHHHHHH
T ss_pred HhhCCCccHH-HHHHHHHHHHHHHHcC--CCcEEEEEEeecCccCC-cceEEEEEEEEcCCeeEEEec-CCCCHHHHHHH
Confidence 9999997654 5689999988888775 57899999999999999 899999999999 99999996 99999999999
Q ss_pred HHHHHHHHHHHHHHh
Q 019990 314 DATAEELAEEKTLAY 328 (332)
Q Consensus 314 ~~s~~~i~~~~~~~~ 328 (332)
++|++.|++.++.+.
T Consensus 302 ~~s~~~l~~~~~~~~ 316 (318)
T 1y6j_A 302 RFSAEQVKKVLNEVK 316 (318)
T ss_dssp HHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHHHHh
Confidence 999999999998753
|
| >3d0o_A L-LDH 1, L-lactate dehydrogenase 1; cytoplasm, glycolysis, NAD, oxidoreductase, phosphoprotein; 1.80A {Staphylococcus aureus} PDB: 3d4p_A* 3h3j_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.8e-56 Score=410.76 Aligned_cols=307 Identities=21% Similarity=0.319 Sum_probs=268.3
Q ss_pred CCC-CCcEEEEEcCCChhHHHHHHHHHhcccCCCCCCeEEEEEecccchhhhhhhHhhhhhhccCCc-cceEEeCCHHHH
Q 019990 1 MAK-NPLRVLVTGAAGQIGYALVPMIARGIMLGPDQPVILHMLDIEPAAEALNGVKMELIDAAFPLL-KGVVATTDVVEA 78 (332)
Q Consensus 1 m~~-~~~kI~VtGaaG~IGs~l~~~L~~~~~~~~~~~~~i~l~D~~~~~~~~~~~~~dl~~~~~~~~-~~v~~~~~~~~a 78 (332)
|++ +++||+|+|| |.+|++++..|+..+++. +++|+|++. +++++.++|+.|.. +.. .++....+.+++
T Consensus 1 m~~m~~~KI~IIGa-G~vG~~la~~l~~~~~~~-----ei~L~Di~~--~~~~g~~~dl~~~~-~~~~~~~~v~~~~~~a 71 (317)
T 3d0o_A 1 MNKFKGNKVVLIGN-GAVGSSYAFSLVNQSIVD-----ELVIIDLDT--EKVRGDVMDLKHAT-PYSPTTVRVKAGEYSD 71 (317)
T ss_dssp ---CCCCEEEEECC-SHHHHHHHHHHHHHCSCS-----EEEEECSCH--HHHHHHHHHHHHHG-GGSSSCCEEEECCGGG
T ss_pred CCCCCCCEEEEECC-CHHHHHHHHHHHhCCCCC-----EEEEEeCCh--hHhhhhhhhHHhhh-hhcCCCeEEEeCCHHH
Confidence 543 5689999995 999999999998877653 999999864 57888889998863 333 344444456888
Q ss_pred hCCCcEEEEecCCCCCCCCChhHHHhhhHHHHHHHHHHHHhhcCCCcEEEEEeCChhhHHHHHHHHCCCCCCCcEEEe-e
Q 019990 79 CKDVNIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEKHAAPNCKVLVVANPANTNALILKEFAPSIPAKNITCL-T 157 (332)
Q Consensus 79 ~~~aDiVi~~ag~~~~~~~~~~~~~~~N~~~~~~i~~~i~~~~~~~~~viv~snp~~~~~~~~~~~~~~~~~~~i~~~-t 157 (332)
+++||+||+++|.|+++|++|.+++..|+++++++++.+++++ |+++++++|||++.++++++++ +++|++|++|. |
T Consensus 72 ~~~aDvVvi~ag~~~~~g~~r~dl~~~n~~i~~~i~~~i~~~~-p~a~viv~tNPv~~~t~~~~k~-~~~p~~rviG~gt 149 (317)
T 3d0o_A 72 CHDADLVVICAGAAQKPGETRLDLVSKNLKIFKSIVGEVMASK-FDGIFLVATNPVDILAYATWKF-SGLPKERVIGSGT 149 (317)
T ss_dssp GTTCSEEEECCCCCCCTTCCHHHHHHHHHHHHHHHHHHHHHTT-CCSEEEECSSSHHHHHHHHHHH-HCCCGGGEEECTT
T ss_pred hCCCCEEEECCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHHhC-CCcEEEEecCcHHHHHHHHHHH-hCCCHHHEEecCc
Confidence 9999999999999999999999999999999999999999997 8999999999999999999998 68999997666 9
Q ss_pred cccHHHHHHHHHHHcCCCCCCeeeeEEEecCCCceeecccCcccccCCCCcchhhhcccccc---chhHHHHHHHhhHHH
Q 019990 158 RLDHNRAMGQISERLKVHVSDVKNVIIWGNHSSTQYPDVNHATVTTSKGEKPVREAVADDNW---LNTEFITTVQQRGAA 234 (332)
Q Consensus 158 ~l~~~r~~~~~a~~~~v~~~~v~~~~V~G~hg~~~v~~~s~~~v~~~~~~~p~~~~~~~~~~---~~~~~~~~v~~~~~~ 234 (332)
.+|+.|+++++|+++|+++.+|+.+ |||+||++++|+||++++ +|+|+.+++.+..| ..+++.+++++++++
T Consensus 150 ~lD~~r~~~~la~~l~v~~~~v~~~-v~G~HG~t~~p~~s~~~v----~g~~~~~~~~~~~~~~~~~~~~~~~v~~~g~e 224 (317)
T 3d0o_A 150 ILDSARFRLLLSEAFDVAPRSVDAQ-IIGEHGDTELPVWSHANI----AGQPLKTLLEQRPEGKAQIEQIFVQTRDAAYD 224 (317)
T ss_dssp HHHHHHHHHHHHHHHTSCGGGCBCC-EEBCSSTTCEECTTTCEE----TTEEHHHHHHTSTTHHHHHHHHHHHHHTHHHH
T ss_pred cccHHHHHHHHHHHhCcChhhEEEE-EEecCCCCeeEeeecccc----CCEEHHHHhhccCCCHHHHHHHHHHHHhhhhE
Confidence 9999999999999999999999976 699999999999999999 99999998765445 346889999999999
Q ss_pred HHHhcCCcchHHHHHHHHHHHHHHHcCCCCCcEEEEEEeecCCCCCCCCeEEEEeEEEe-CCeEEEecCCCCCHHHHHHH
Q 019990 235 IIKARKLSSALSAASSACDHIRDWVLGTPKGTWVSMGVYSDGSYGIPEGLIYSFPVTCE-KGEWSIVKGLKVDEFSRAKM 313 (332)
Q Consensus 235 i~~~~g~~~~~~~a~a~~~~i~~~~~~~~~~~i~~~~v~~~g~yg~~~~~~~s~Pv~~~-~G~~~~~~~~~l~~~E~~~l 313 (332)
|++.||.+++ ++|.++++++.+++.+ +++++|++++++|+||++ ++|||+||+++ +|++++++ ++|+++|+++|
T Consensus 225 ii~~kg~~~~-~~a~a~~~~~~ai~~~--~~~~~~~~~~~~g~~g~~-~~~~~vP~~ig~~Gv~~i~~-~~l~~~e~~~l 299 (317)
T 3d0o_A 225 IIQAKGATYY-GVAMGLARITEAIFRN--EDAVLTVSALLEGEYEEE-DVYIGVPAVINRNGIRNVVE-IPLNDEEQSKF 299 (317)
T ss_dssp HHHHHSCCCH-HHHHHHHHHHHHHHTT--CCEEEEEEEEEESGGGCE-EEEEEEEEEEETTEEEEECC-CCCCHHHHHHH
T ss_pred EEeCCCCchH-hHHHHHHHHHHHHHcC--CCcEEEEEEeecCccCCC-ceEEEEEEEEeCCeeEEEec-CCCCHHHHHHH
Confidence 9999997664 5689999988887764 578999999999999997 99999999999 99999996 99999999999
Q ss_pred HHHHHHHHHHHHHHh
Q 019990 314 DATAEELAEEKTLAY 328 (332)
Q Consensus 314 ~~s~~~i~~~~~~~~ 328 (332)
++|++.|++.++...
T Consensus 300 ~~s~~~l~~~~~~~~ 314 (317)
T 3d0o_A 300 AHSAKTLKDIMAEAE 314 (317)
T ss_dssp HHHHHHHHHHHHC--
T ss_pred HHHHHHHHHHHHHHH
Confidence 999999999988654
|
| >2d4a_B Malate dehydrogenase; archaea, hyperthermophIle, oxidoreductase; 2.87A {Aeropyrum pernix} | Back alignment and structure |
|---|
Probab=100.00 E-value=7.1e-57 Score=412.66 Aligned_cols=302 Identities=21% Similarity=0.324 Sum_probs=271.3
Q ss_pred EEEEEcCCChhHHHHHHHHHhcccCCCCCCeEEEEEecccchhhhhhhHhhhhhhccCC--ccceEEeCCHHHHhCCCcE
Q 019990 7 RVLVTGAAGQIGYALVPMIARGIMLGPDQPVILHMLDIEPAAEALNGVKMELIDAAFPL--LKGVVATTDVVEACKDVNI 84 (332)
Q Consensus 7 kI~VtGaaG~IGs~l~~~L~~~~~~~~~~~~~i~l~D~~~~~~~~~~~~~dl~~~~~~~--~~~v~~~~~~~~a~~~aDi 84 (332)
||+|+|| |.+|++++..|+..++ + +|+|+|++. +++++.++|+.|...+. ...+..+.+. +++++||+
T Consensus 1 KI~IiGa-G~vG~~~a~~l~~~~l-~-----el~L~Di~~--~~~~g~~~dl~~~~~~~~~~~~i~~t~d~-~a~~~aD~ 70 (308)
T 2d4a_B 1 MITILGA-GKVGMATAVMLMMRGY-D-----DLLLIARTP--GKPQGEALDLAHAAAELGVDIRISGSNSY-EDMRGSDI 70 (308)
T ss_dssp CEEEECC-SHHHHHHHHHHHHHTC-S-----CEEEECSST--THHHHHHHHHHHHHHHHTCCCCEEEESCG-GGGTTCSE
T ss_pred CEEEECc-CHHHHHHHHHHHhCCC-C-----EEEEEcCCh--hhHHHHHHHHHHhhhhcCCCeEEEECCCH-HHhCCCCE
Confidence 6999995 9999999999988776 4 899999974 57788899998864332 2346655664 78999999
Q ss_pred EEEecCCCCCCCCChhHHHhhhHHHHHHHHHHHHhhcCCCcEEEEEeCChhhHHHHHHHHCCCCCCCcEEEe-ecccHHH
Q 019990 85 AVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEKHAAPNCKVLVVANPANTNALILKEFAPSIPAKNITCL-TRLDHNR 163 (332)
Q Consensus 85 Vi~~ag~~~~~~~~~~~~~~~N~~~~~~i~~~i~~~~~~~~~viv~snp~~~~~~~~~~~~~~~~~~~i~~~-t~l~~~r 163 (332)
||+++|.++++|++|.+++..|+++++++++.+++++ |+++++++|||++.++++++++ +++|++|++|. |.||+.|
T Consensus 71 Vi~~ag~~~k~G~~r~dl~~~n~~i~~~i~~~i~~~~-p~a~iiv~tNPv~~~t~~~~k~-~~~p~~rviG~gt~LD~~R 148 (308)
T 2d4a_B 71 VLVTAGIGRKPGMTREQLLEANANTMADLAEKIKAYA-KDAIVVITTNPVDAMTYVMYKK-TGFPRERVIGFSGILDSAR 148 (308)
T ss_dssp EEECCSCCCCSSCCTHHHHHHHHHHHHHHHHHHHHHC-TTCEEEECCSSHHHHHHHHHHH-HCCCGGGEEECCHHHHHHH
T ss_pred EEEeCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHHHC-CCeEEEEeCCchHHHHHHHHHh-cCCChhhEEEecccchHHH
Confidence 9999999999999999999999999999999999998 9999999999999999999998 78999997777 9999999
Q ss_pred HHHHHHHHcCCCCCCeeeeEEEecCCCceeecccCcccccCCCCcchhhhccccccchhHHHHHHHhhHHHHHHhcCCcc
Q 019990 164 AMGQISERLKVHVSDVKNVIIWGNHSSTQYPDVNHATVTTSKGEKPVREAVADDNWLNTEFITTVQQRGAAIIKARKLSS 243 (332)
Q Consensus 164 ~~~~~a~~~~v~~~~v~~~~V~G~hg~~~v~~~s~~~v~~~~~~~p~~~~~~~~~~~~~~~~~~v~~~~~~i~~~~g~~~ 243 (332)
+++++|+++|+++.+|+.+ |||+||++++|+||++++ +|+|+.+++.++.| +++.+++++++++|++.||.++
T Consensus 149 ~~~~la~~lgv~~~~v~~~-v~G~Hg~t~~p~~s~~~v----~g~~~~~~~~~~~~--~~~~~~v~~~g~eii~~kg~s~ 221 (308)
T 2d4a_B 149 MAYYISQKLGVSFKSVNAI-VLGMHGQKMFPVPRLSSV----GGVPLEHLMSKEEI--EEVVSETVNAGAKITELRGYSS 221 (308)
T ss_dssp HHHHHHHHHTSCGGGEECC-EEBCSSTTCEECGGGCEE----TTEEHHHHSCHHHH--HHHHHHHHTHHHHHHHHHSSCC
T ss_pred HHHHHHHHhCcChhHeEEE-EEeccCCceeeeehhccC----CCEEHHHHcCHHHH--HHHHHHHHHhhHhhhhCCCCcc
Confidence 9999999999999999987 699999999999999999 99999998866543 7899999999999999999555
Q ss_pred hHHHHHHHHHHHHHHHcCCCCCcEEEEEEeecCCCCCCCCeEEEEeEEEe-CCeEEEecCCCCCHHHHHHHHHHHHHHHH
Q 019990 244 ALSAASSACDHIRDWVLGTPKGTWVSMGVYSDGSYGIPEGLIYSFPVTCE-KGEWSIVKGLKVDEFSRAKMDATAEELAE 322 (332)
Q Consensus 244 ~~~~a~a~~~~i~~~~~~~~~~~i~~~~v~~~g~yg~~~~~~~s~Pv~~~-~G~~~~~~~~~l~~~E~~~l~~s~~~i~~ 322 (332)
++++|.++++++.+++.+ +++++|++++++|+||+ +++|||+||+++ +|++++++ ++|+++|+++|++|++.|++
T Consensus 222 ~~~~a~a~~~~~~ai~~~--~~~v~~vs~~~~G~yg~-~~~~~~vP~~ig~~Gv~~i~~-~~L~~~e~~~l~~s~~~l~~ 297 (308)
T 2d4a_B 222 NYGPAAGLVLTVEAIKRD--SKRIYPYSLYLQGEYGY-NDIVAEVPAVIGKSGIERIIE-LPLTEDEKRKFDEAVQAVKK 297 (308)
T ss_dssp CHHHHHHHHHHHHHHHTT--CCEEEEEEEEEESGGGC-EEEEEEEEEEEETTEEEEECC-CCCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhC--CCcEEEEEEEEcCccCC-CceEEEEEEEEcCCceEEecC-CCCCHHHHHHHHHHHHHHHH
Confidence 678899999988887764 57999999999999999 899999999999 99999996 99999999999999999999
Q ss_pred HHHHHhhhh
Q 019990 323 EKTLAYSCL 331 (332)
Q Consensus 323 ~~~~~~~~~ 331 (332)
.++....+|
T Consensus 298 ~~~~~~~~l 306 (308)
T 2d4a_B 298 LVETLPPQL 306 (308)
T ss_dssp HHHTSCHHH
T ss_pred HHHHHHHHh
Confidence 999877665
|
| >2xxj_A L-LDH, L-lactate dehydrogenase; oxidoreductase, hyperthermophIle; HET: NAD; 1.964A {Thermus thermophilus} PDB: 2xxb_A* 3zzn_A* 2v7p_A* 2e37_A* 2v6m_A* 2xxe_A 4a73_A | Back alignment and structure |
|---|
Probab=100.00 E-value=3.1e-56 Score=408.77 Aligned_cols=301 Identities=17% Similarity=0.239 Sum_probs=267.0
Q ss_pred cEEEEEcCCChhHHHHHHHHHhcccCCCCCCeEEEEEecccchhhhhhhHhhhhhhccCCccceEEeCCHHHHhCCCcEE
Q 019990 6 LRVLVTGAAGQIGYALVPMIARGIMLGPDQPVILHMLDIEPAAEALNGVKMELIDAAFPLLKGVVATTDVVEACKDVNIA 85 (332)
Q Consensus 6 ~kI~VtGaaG~IGs~l~~~L~~~~~~~~~~~~~i~l~D~~~~~~~~~~~~~dl~~~~~~~~~~v~~~~~~~~a~~~aDiV 85 (332)
|||+|+|| |.||++++..|+..++++ +|+|+|++. +++++.++|+.|.. ++..++....+.++++++||+|
T Consensus 1 ~KI~IiGa-G~vG~~~a~~l~~~~~~~-----el~L~Di~~--~k~~g~a~dl~~~~-~~~~~~~v~~~~~~a~~~aD~V 71 (310)
T 2xxj_A 1 MKVGIVGS-GMVGSATAYALALLGVAR-----EVVLVDLDR--KLAQAHAEDILHAT-PFAHPVWVWAGSYGDLEGARAV 71 (310)
T ss_dssp CEEEEECC-SHHHHHHHHHHHHTTCCS-----EEEEECSSH--HHHHHHHHHHHTTG-GGSCCCEEEECCGGGGTTEEEE
T ss_pred CEEEEECC-CHHHHHHHHHHHhCCCCC-----EEEEEeCCh--hHHHHHHHHHHHhH-hhcCCeEEEECCHHHhCCCCEE
Confidence 58999995 999999999999888754 999999964 57888999999865 2223443333447889999999
Q ss_pred EEecCCCCCCCCChhHHHhhhHHHHHHHHHHHHhhcCCCcEEEEEeCChhhHHHHHHHHCCCCCCCcEEEe-ecccHHHH
Q 019990 86 VMVGGFPRKEGMERKDVMSKNVSIYKAQASALEKHAAPNCKVLVVANPANTNALILKEFAPSIPAKNITCL-TRLDHNRA 164 (332)
Q Consensus 86 i~~ag~~~~~~~~~~~~~~~N~~~~~~i~~~i~~~~~~~~~viv~snp~~~~~~~~~~~~~~~~~~~i~~~-t~l~~~r~ 164 (332)
|+++|.++++|++|.+++..|+++++++++.+++++ |+++++++|||++.+++++++. +++|++|++|. |.||+.|+
T Consensus 72 ii~ag~~~~~g~~r~dl~~~n~~i~~~i~~~i~~~~-p~a~iiv~tNPv~~~t~~~~k~-s~~p~~rviG~gt~LD~~R~ 149 (310)
T 2xxj_A 72 VLAAGVAQRPGETRLQLLDRNAQVFAQVVPRVLEAA-PEAVLLVATNPVDVMTQVAYAL-SGLPPGRVVGSGTILDTARF 149 (310)
T ss_dssp EECCCCCCCTTCCHHHHHHHHHHHHHHHHHHHHHHC-TTCEEEECSSSHHHHHHHHHHH-HTCCGGGEEECTTHHHHHHH
T ss_pred EECCCCCCCCCcCHHHHHHhhHHHHHHHHHHHHHHC-CCcEEEEecCchHHHHHHHHHH-cCCCHHHEEecCcchhHHHH
Confidence 999999999999999999999999999999999997 9999999999999999999998 68999997665 99999999
Q ss_pred HHHHHHHcCCCCCCeeeeEEEecCCCceeecccCcccccCCCCcchhhhccccc--c---chhHHHHHHHhhHHHHHHhc
Q 019990 165 MGQISERLKVHVSDVKNVIIWGNHSSTQYPDVNHATVTTSKGEKPVREAVADDN--W---LNTEFITTVQQRGAAIIKAR 239 (332)
Q Consensus 165 ~~~~a~~~~v~~~~v~~~~V~G~hg~~~v~~~s~~~v~~~~~~~p~~~~~~~~~--~---~~~~~~~~v~~~~~~i~~~~ 239 (332)
++++|+++|+++.+|+. +|||+||++++|+||++++ +|+|+.+++.+.. | ..+++.+++++++++|++.|
T Consensus 150 ~~~la~~lgv~~~~v~~-~v~G~HG~t~~p~~s~~~v----~g~~~~~~~~~~~~~~~~~~~~~~~~~v~~~g~eii~~k 224 (310)
T 2xxj_A 150 RALLAEYLRVAPQSVHA-YVLGEHGDSEVLVWSSAQV----GGVPLLEFAEARGRALSPEDRARIDEGVRRAAYRIIEGK 224 (310)
T ss_dssp HHHHHHHHTSCGGGEEE-EEEBCSSTTCEEEEEEEEE----TTEEHHHHHHHTTCCCCHHHHHHHHHHHHTHHHHHHHHH
T ss_pred HHHHHHHhCcCHHHeEE-EEecccCCccccchhhccC----CCEEHHHHhhhcccCCCHHHHHHHHHHHHHhhHHHHhcc
Confidence 99999999999999998 5799999999999999999 9999999865432 4 45689999999999999999
Q ss_pred CCcchHHHHHHHHHHHHHHHcCCCCCcEEEEEEeecCCCCCCCCeEEEEeEEEe-CCeEEEecCCCCCHHHHHHHHHHHH
Q 019990 240 KLSSALSAASSACDHIRDWVLGTPKGTWVSMGVYSDGSYGIPEGLIYSFPVTCE-KGEWSIVKGLKVDEFSRAKMDATAE 318 (332)
Q Consensus 240 g~~~~~~~a~a~~~~i~~~~~~~~~~~i~~~~v~~~g~yg~~~~~~~s~Pv~~~-~G~~~~~~~~~l~~~E~~~l~~s~~ 318 (332)
|.+++ ++|.++++++.+++.+ +++++|++++++|+||+ +++|||+||++| +|++++++ ++|+++|+++|++|++
T Consensus 225 g~t~~-~~a~a~~~~~~ai~~~--~~~~~~vs~~~~G~yg~-~~~~~~vP~~ig~~Gv~~i~~-~~L~~~e~~~l~~s~~ 299 (310)
T 2xxj_A 225 GATYY-GIGAGLARLVRAILTD--EKGVYTVSAFTPEVAGV-LEVSLSLPRILGAGGVAGTVY-PSLSPEERAALRRSAE 299 (310)
T ss_dssp SCCCH-HHHHHHHHHHHHHHTT--CCEEEEEEEEEEEETTE-EEEEEEEEEEEETTEEEEECC-CCCCHHHHHHHHHHHH
T ss_pred CCcHH-HHHHHHHHHHHHHHcC--CCCEEEEEEEEcCccCC-ccEEEEEEEEEeCCeeEEEcC-CCCCHHHHHHHHHHHH
Confidence 97654 5689999988887764 58899999999999999 899999999999 99999996 9999999999999999
Q ss_pred HHHHHHHHH
Q 019990 319 ELAEEKTLA 327 (332)
Q Consensus 319 ~i~~~~~~~ 327 (332)
.|++.++..
T Consensus 300 ~l~~~~~~~ 308 (310)
T 2xxj_A 300 ILKEAAFAL 308 (310)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHh
Confidence 999998865
|
| >1hye_A L-lactate/malate dehydrogenase; nucleotide binding domain, oxidoreductase; HET: NAP; 1.90A {Methanocaldococcus jannaschii} SCOP: c.2.1.5 d.162.1.1 PDB: 1hyg_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=3.9e-56 Score=409.39 Aligned_cols=303 Identities=22% Similarity=0.366 Sum_probs=262.0
Q ss_pred cEEEEEcCCChhHHHHHHHHHhcccCCCCCCeEEEEEecccchhhhhhhHhhhhhhccCCcc--ceEEeC-CHHHHhCCC
Q 019990 6 LRVLVTGAAGQIGYALVPMIARGIMLGPDQPVILHMLDIEPAAEALNGVKMELIDAAFPLLK--GVVATT-DVVEACKDV 82 (332)
Q Consensus 6 ~kI~VtGaaG~IGs~l~~~L~~~~~~~~~~~~~i~l~D~~~~~~~~~~~~~dl~~~~~~~~~--~v~~~~-~~~~a~~~a 82 (332)
|||+||||+||||++++..|+..++.. +++|+|+..+.+++.+.++|+.|....... ++.... +++++++++
T Consensus 1 mKI~V~GaaG~vG~~l~~~L~~~~~~~-----el~L~Di~~~~~~~~~~~~dl~~~~~~~~~~~~i~~~~d~l~~al~ga 75 (313)
T 1hye_A 1 MKVTIIGASGRVGSATALLLAKEPFMK-----DLVLIGREHSINKLEGLREDIYDALAGTRSDANIYVESDENLRIIDES 75 (313)
T ss_dssp CEEEEETTTSHHHHHHHHHHHTCTTCC-----EEEEEECGGGHHHHHHHHHHHHHHHTTSCCCCEEEEEETTCGGGGTTC
T ss_pred CEEEEECCCChhHHHHHHHHHhCCCCC-----EEEEEcCCCchhhhHHHHHHHHHhHHhcCCCeEEEeCCcchHHHhCCC
Confidence 489999988999999999999877643 899999833334578888999886422212 444433 368899999
Q ss_pred cEEEEecCCCCCCCCChhHHHhhhHHHHHHHHHHHHhhcCCCcEEEEEeCChhhHHHHHHHHCCCCCCCcEEEe-ecccH
Q 019990 83 NIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEKHAAPNCKVLVVANPANTNALILKEFAPSIPAKNITCL-TRLDH 161 (332)
Q Consensus 83 DiVi~~ag~~~~~~~~~~~~~~~N~~~~~~i~~~i~~~~~~~~~viv~snp~~~~~~~~~~~~~~~~~~~i~~~-t~l~~ 161 (332)
|+|||+||.+++++++|.+++..|+++++++++++++++ +++++++|||+|.+++++++. +++|++|++|. |.||+
T Consensus 76 D~Vi~~Ag~~~~~g~~r~dl~~~N~~i~~~i~~~i~~~~--~~~vlv~SNPv~~~t~~~~k~-~~~p~~rviG~gt~LD~ 152 (313)
T 1hye_A 76 DVVIITSGVPRKEGMSRMDLAKTNAKIVGKYAKKIAEIC--DTKIFVITNPVDVMTYKALVD-SKFERNQVFGLGTHLDS 152 (313)
T ss_dssp SEEEECCSCCCCTTCCHHHHHHHHHHHHHHHHHHHHHHC--CCEEEECSSSHHHHHHHHHHH-HCCCTTSEEECTTHHHH
T ss_pred CEEEECCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHHhC--CeEEEEecCcHHHHHHHHHHh-hCcChhcEEEeCccHHH
Confidence 999999999999999999999999999999999999997 789999999999999999998 78999998777 99999
Q ss_pred HHHHHHHHHHcCCCCCCeeeeEEEecCCCceeecccCcccccCCCCcchhhhc--cccccchhHHHHHHHhhHHHHHHhc
Q 019990 162 NRAMGQISERLKVHVSDVKNVIIWGNHSSTQYPDVNHATVTTSKGEKPVREAV--ADDNWLNTEFITTVQQRGAAIIKAR 239 (332)
Q Consensus 162 ~r~~~~~a~~~~v~~~~v~~~~V~G~hg~~~v~~~s~~~v~~~~~~~p~~~~~--~~~~~~~~~~~~~v~~~~~~i~~~~ 239 (332)
.|+++++|+++|+++.+|+.+ |||+||++++|+||++++ +|+|+.+++ .++. .+++.+++++++++|++.|
T Consensus 153 ~r~~~~la~~lgv~~~~v~~~-v~G~Hg~~~~p~~s~~~v----~g~~~~~~~~~~~~~--~~~~~~~v~~~g~eii~~k 225 (313)
T 1hye_A 153 LRFKVAIAKFFGVHIDEVRTR-IIGEHGDSMVPLLSATSI----GGIPIQKFERFKELP--IDEIIEDVKTKGEQIIRLK 225 (313)
T ss_dssp HHHHHHHHHHHTCCGGGEECC-EEECSSTTEEECGGGCEE----TTEEGGGCGGGGGCC--HHHHHHHHHHHTTSCCC--
T ss_pred HHHHHHHHHHhCcCHHHeEEE-EeeccCCcccceeecccc----CCEEHHHHhcCCHHH--HHHHHHHHHhccceeecCC
Confidence 999999999999999999986 699999999999999999 999999874 4442 5799999999999999999
Q ss_pred CCcchHHHHHHHHHHHHHHHcCCCCCcEEEEEEeecCCC-CCCCCeEEEEeEEEe-CCeEEEecCCCCCHHHHHHHHHHH
Q 019990 240 KLSSALSAASSACDHIRDWVLGTPKGTWVSMGVYSDGSY-GIPEGLIYSFPVTCE-KGEWSIVKGLKVDEFSRAKMDATA 317 (332)
Q Consensus 240 g~~~~~~~a~a~~~~i~~~~~~~~~~~i~~~~v~~~g~y-g~~~~~~~s~Pv~~~-~G~~~~~~~~~l~~~E~~~l~~s~ 317 (332)
| ++++++|+++++++.+++.+ +++++|++++++|+| |+ .++|||+||++| +|++++++ ++|+++|+++|++|+
T Consensus 226 g-s~~~~~a~a~~~~~~ai~~~--~~~~~~~~~~~~g~~~g~-~~~~~~~P~~ig~~Gv~~i~~-~~l~~~e~~~l~~s~ 300 (313)
T 1hye_A 226 G-GSEFGPAAAILNVVRCIVNN--EKRLLTLSAYVDGEFDGI-RDVCIGVPVKIGRDGIEEVVS-IELDKDEIIAFRKSA 300 (313)
T ss_dssp -----CCHHHHHHHHHHHHHTT--CCEEEEEEEEEESSSSSC-EEEEEEEEEEEETTEEEEECC-CCCCHHHHHHHHHHH
T ss_pred C-CcHHHHHHHHHHHHHHHHcC--CCeEEEEEEeecceecCc-cceEEEEEEEEeCCeeEEecC-CCCCHHHHHHHHHHH
Confidence 8 55577899999988887774 578999999999999 99 899999999999 99999996 999999999999999
Q ss_pred HHHHHHHHHHh
Q 019990 318 EELAEEKTLAY 328 (332)
Q Consensus 318 ~~i~~~~~~~~ 328 (332)
+.|++.++...
T Consensus 301 ~~l~~~~~~~~ 311 (313)
T 1hye_A 301 EIIKKYCEEVK 311 (313)
T ss_dssp HHHHHHHHHHT
T ss_pred HHHHHHHHHHh
Confidence 99999998764
|
| >1ldn_A L-lactate dehydrogenase; oxidoreductase(CHOH(D)-NAD(A)); HET: FBP NAD; 2.50A {Geobacillus stearothermophilus} SCOP: c.2.1.5 d.162.1.1 PDB: 1ldb_A 2ldb_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.1e-54 Score=399.98 Aligned_cols=307 Identities=21% Similarity=0.305 Sum_probs=269.2
Q ss_pred CCC-CCcEEEEEcCCChhHHHHHHHHHhcccCCCCCCeEEEEEecccchhhhhhhHhhhhhhccCCccceEEeCCHHHHh
Q 019990 1 MAK-NPLRVLVTGAAGQIGYALVPMIARGIMLGPDQPVILHMLDIEPAAEALNGVKMELIDAAFPLLKGVVATTDVVEAC 79 (332)
Q Consensus 1 m~~-~~~kI~VtGaaG~IGs~l~~~L~~~~~~~~~~~~~i~l~D~~~~~~~~~~~~~dl~~~~~~~~~~v~~~~~~~~a~ 79 (332)
|.+ +++||+|+|| |.+|++++..|+..++.+ +|+|+|++. +++++..+|+.|.......++....+.++++
T Consensus 1 m~~~~~~kI~IIGa-G~vG~sla~~l~~~~~~~-----ev~l~Di~~--~~~~~~~~dl~~~~~~~~~~~~i~~~~~~al 72 (316)
T 1ldn_A 1 MKNNGGARVVVIGA-GFVGASYVFALMNQGIAD-----EIVLIDANE--SKAIGDAMDFNHGKVFAPKPVDIWHGDYDDC 72 (316)
T ss_dssp CTTTTSCEEEEECC-SHHHHHHHHHHHHHTCCS-----EEEEECSSH--HHHHHHHHHHHHHTTSSSSCCEEEECCGGGT
T ss_pred CCCCCCCEEEEECc-CHHHHHHHHHHHhCCCCC-----EEEEEeCCc--chHHHHHhhHHHHhhhcCCCeEEEcCcHHHh
Confidence 664 4679999995 999999999998877654 899999964 4677888899886422222444444557889
Q ss_pred CCCcEEEEecCCCCCCCCChhHHHhhhHHHHHHHHHHHHhhcCCCcEEEEEeCChhhHHHHHHHHCCCCCCCcEEEe-ec
Q 019990 80 KDVNIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEKHAAPNCKVLVVANPANTNALILKEFAPSIPAKNITCL-TR 158 (332)
Q Consensus 80 ~~aDiVi~~ag~~~~~~~~~~~~~~~N~~~~~~i~~~i~~~~~~~~~viv~snp~~~~~~~~~~~~~~~~~~~i~~~-t~ 158 (332)
++||+||++++.+++++++|.+++..|.++++++++.+++++ |+++++++|||++.++++++++ +++|++|++|. |.
T Consensus 73 ~~aDvViia~~~~~~~g~~r~dl~~~n~~i~~~i~~~i~~~~-p~a~~iv~tNPv~~~~~~~~~~-s~~p~~rviG~gt~ 150 (316)
T 1ldn_A 73 RDADLVVICAGANQKPGETRLDLVDKNIAIFRSIVESVMASG-FQGLFLVATNPVDILTYATWKF-SGLPHERVIGSGTI 150 (316)
T ss_dssp TTCSEEEECCSCCCCTTTCSGGGHHHHHHHHHHHHHHHHHHT-CCSEEEECSSSHHHHHHHHHHH-HTCCGGGEEECTTH
T ss_pred CCCCEEEEcCCCCCCCCCCHHHHHHcChHHHHHHHHHHHHHC-CCCEEEEeCCchHHHHHHHHHH-hCCCHHHEEecccc
Confidence 999999999999999999999999999999999999999998 8999999999999999999998 68999997666 99
Q ss_pred ccHHHHHHHHHHHcCCCCCCeeeeEEEecCCCceeecccCcccccCCCCcchhhhccccc-cc---hhHHHHHHHhhHHH
Q 019990 159 LDHNRAMGQISERLKVHVSDVKNVIIWGNHSSTQYPDVNHATVTTSKGEKPVREAVADDN-WL---NTEFITTVQQRGAA 234 (332)
Q Consensus 159 l~~~r~~~~~a~~~~v~~~~v~~~~V~G~hg~~~v~~~s~~~v~~~~~~~p~~~~~~~~~-~~---~~~~~~~v~~~~~~ 234 (332)
+|+.|+++++|+++|+++.+|+. +|||+||++++|+||++++ +|+|+.+++.+.. |. .+++.+++++++++
T Consensus 151 lD~~r~~~~la~~l~v~~~~v~~-~v~G~HG~~~~p~~s~~~v----~g~~~~~~~~~~~~~~~~~~~~~~~~v~~~g~e 225 (316)
T 1ldn_A 151 LDTARFRFLLGEYFSVAPQNVHA-YIIGEHGDTELPVWSQAYI----GVMPIRKLVESKGEEAQKDLERIFVNVRDAAYQ 225 (316)
T ss_dssp HHHHHHHHHHHHHHTSCGGGEEE-EEEBCSSTTCEEEEEEEEE----TTEESTTTSGGGTTTHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHhCCCHHHeEE-EEecccCCceeeeehhccC----CCEEHHHHhhccccCCHHHHHHHHHHHHHhHHH
Confidence 99999999999999999999998 5799999999999999999 9999999876543 43 36889999999999
Q ss_pred HHHhcCCcchHHHHHHHHHHHHHHHcCCCCCcEEEEEEeecCCCCCCCCeEEEEeEEEe-CCeEEEecCCCCCHHHHHHH
Q 019990 235 IIKARKLSSALSAASSACDHIRDWVLGTPKGTWVSMGVYSDGSYGIPEGLIYSFPVTCE-KGEWSIVKGLKVDEFSRAKM 313 (332)
Q Consensus 235 i~~~~g~~~~~~~a~a~~~~i~~~~~~~~~~~i~~~~v~~~g~yg~~~~~~~s~Pv~~~-~G~~~~~~~~~l~~~E~~~l 313 (332)
|++.||.+++ ++|.++++++.+++.+ +++++|++++++|+||+ +++|||+||++| +|++++++ ++|+++|+++|
T Consensus 226 ii~~kg~~~~-~~a~a~~~~~~ai~~~--~~~~~~~~~~~~g~yg~-~~~~~~vP~~ig~~Gv~~i~~-~~l~~~e~~~l 300 (316)
T 1ldn_A 226 IIEKKGATYY-GIAMGLARVTRAILHN--ENAILTVSAYLDGLYGE-RDVYIGVPAVINRNGIREVIE-IELNDDEKNRF 300 (316)
T ss_dssp HHHHHSCCCH-HHHHHHHHHHHHHHTT--CCEEEEEEEEEESTTSC-EEEEEEEEEEEETTEEEEECC-CCCCHHHHHHH
T ss_pred HHhccCCcHH-HHHHHHHHHHHHHHhC--CCcEEEEEEEecCccCC-cceEEEEEEEEeCCeeEEEcc-CCCCHHHHHHH
Confidence 9999997664 6688999988887764 57899999999999999 899999999999 99999996 99999999999
Q ss_pred HHHHHHHHHHHHHH
Q 019990 314 DATAEELAEEKTLA 327 (332)
Q Consensus 314 ~~s~~~i~~~~~~~ 327 (332)
++|++.|++.++..
T Consensus 301 ~~s~~~l~~~~~~~ 314 (316)
T 1ldn_A 301 HHSAATLKSVLARA 314 (316)
T ss_dssp HHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHH
Confidence 99999999999865
|
| >3ldh_A Lactate dehydrogenase; oxidoreductase, CHOH donor, NAD acceptor; HET: NAD; 3.00A {Squalus acanthias} SCOP: i.12.1.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=2.8e-56 Score=408.63 Aligned_cols=287 Identities=20% Similarity=0.273 Sum_probs=253.6
Q ss_pred CCcEEEEEcCCChhHHHHHHHHHhcccCCCCCCeEEEEEecccchhhhhhhHhhhhhhc-cCCccceEEeCCHHHHhCCC
Q 019990 4 NPLRVLVTGAAGQIGYALVPMIARGIMLGPDQPVILHMLDIEPAAEALNGVKMELIDAA-FPLLKGVVATTDVVEACKDV 82 (332)
Q Consensus 4 ~~~kI~VtGaaG~IGs~l~~~L~~~~~~~~~~~~~i~l~D~~~~~~~~~~~~~dl~~~~-~~~~~~v~~~~~~~~a~~~a 82 (332)
+.+||+|+|| |.+|+++++.|+..++++ +++|+|++. +++++.++||.|.. ++....+..+++. +++++|
T Consensus 20 ~~~kV~ViGa-G~vG~~~a~~la~~g~~~-----ev~L~Di~~--~~~~g~a~DL~~~~~~~~~~~i~~t~d~-~~~~da 90 (330)
T 3ldh_A 20 SYNKITVVGC-DAVGMADAISVLMKDLAD-----EVALVDVME--DKLKGEMMDLEHGSLFLHTAKIVSGKDY-SVSAGS 90 (330)
T ss_dssp CCCEEEEEST-THHHHHHHHHHHHHCCCS-----EEEEECSCH--HHHHHHHHHHHHHGGGSCCSEEEEESSS-CSCSSC
T ss_pred CCCEEEEECC-CHHHHHHHHHHHhCCCCC-----eEEEEECCH--HHHHHHHHHhhhhhhcccCCeEEEcCCH-HHhCCC
Confidence 4689999995 999999999999988765 899999954 57899999999973 3334456666665 469999
Q ss_pred cEEEEecCCCCCCCCChhHHHhhhHHHHHHHHHHHHhhcCCCcEEEEEeCChhhHHHHHHHHCCCCCCCcEEE-eecccH
Q 019990 83 NIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEKHAAPNCKVLVVANPANTNALILKEFAPSIPAKNITC-LTRLDH 161 (332)
Q Consensus 83 DiVi~~ag~~~~~~~~~~~~~~~N~~~~~~i~~~i~~~~~~~~~viv~snp~~~~~~~~~~~~~~~~~~~i~~-~t~l~~ 161 (332)
|+||++||.|+++|++|.+++..|+++++++++.+.+++ |+++++++|||+|.+++++++. +++|++|++| +|.||+
T Consensus 91 DiVIitaG~p~kpG~tR~dll~~N~~I~k~i~~~I~k~~-P~a~ilvvtNPvdi~t~~~~k~-sg~p~~rViG~gt~LDs 168 (330)
T 3ldh_A 91 KLVVITAGARQQEGESRLNLVQRNVNIFKFIIPNIVKHS-PDCLKELHPELGTDKNKQDWKL-SGLPMHRIIGSGCNLDS 168 (330)
T ss_dssp SEEEECCSCCCCSSCCTTGGGHHHHHHHHHHHHHHHHHC-TTCEEEECSSSHHHHHHHHHHH-HCCCGGGEECCTTHHHH
T ss_pred CEEEEeCCCCCCCCCCHHHHHHhhHHHHHHHHHHHHhhC-CCceEEeCCCccHHHHHHHHHH-hCCCHHHeecccCchhH
Confidence 999999999999999999999999999999999999997 9999999999999999999998 6899999555 589999
Q ss_pred HHHHHHHHHHcCCCCCCeeeeEEEecCCCceeecccCcccccCCCCcchhhhccccccchhHHHHHHHhhHHHHHHhcCC
Q 019990 162 NRAMGQISERLKVHVSDVKNVIIWGNHSSTQYPDVNHATVTTSKGEKPVREAVADDNWLNTEFITTVQQRGAAIIKARKL 241 (332)
Q Consensus 162 ~r~~~~~a~~~~v~~~~v~~~~V~G~hg~~~v~~~s~~~v~~~~~~~p~~~~~~~~~~~~~~~~~~v~~~~~~i~~~~g~ 241 (332)
.|+++++|+++|+++.+|+.+ |||+||++++|+||+ +| .+++.+++++++++|++.||.
T Consensus 169 ~R~~~~lA~~lgv~~~~V~~~-V~G~Hg~t~vp~~S~-------------------~~-~~~~~~~v~~~g~eii~~kg~ 227 (330)
T 3ldh_A 169 ARFRYLMGERLGVHSCLVIGW-VIGQHGDSVPSVWSG-------------------MW-DAKLHKDVVDSAYEVIKLKGY 227 (330)
T ss_dssp HHHHHHHHHHHTSCTTTCCEE-ECSSSSTTCCEEEEE-------------------EE-ETTEEHHHHHCCCTTSTTCHH
T ss_pred HHHHHHHHHHhCCCHHHeEEE-EEcCCCCceeeechh-------------------hH-HHHHHHHHHHHHHHHHHccCC
Confidence 999999999999999999986 699999999999997 12 247888899999999999986
Q ss_pred cchHHHHH-----------------HHHHHHHHHHcCCCCCcEEEEEEeecCCCCCCCCeEEEEeEEEeCCeEE--EecC
Q 019990 242 SSALSAAS-----------------SACDHIRDWVLGTPKGTWVSMGVYSDGSYGIPEGLIYSFPVTCEKGEWS--IVKG 302 (332)
Q Consensus 242 ~~~~~~a~-----------------a~~~~i~~~~~~~~~~~i~~~~v~~~g~yg~~~~~~~s~Pv~~~~G~~~--~~~~ 302 (332)
|+ +++|+ ++++++.+++. ++++|+|+|++++|+||+++++|||+||++|+|+++ +++
T Consensus 228 t~-~a~a~~~~~~~~~~~~~~~~~~a~~~~~~ail~--~~~~v~~~s~~~~g~yg~~~~v~~s~P~~lg~Gv~~~~iv~- 303 (330)
T 3ldh_A 228 TS-WAIGLVVSNPVDVLTYVAWKGCSVADLAQTIMK--DLCRVHPVSTMVKDFYGIKDNVFLSLPCVLNNGISHCNIVK- 303 (330)
T ss_dssp HH-HHHHHTTHHHHTTSSSCSCTHHHHHHHHHHHHH--TCCEEECCBCCCSSSSSCCSCCCCBCCEEEBTTBCTTCCCC-
T ss_pred cc-eeeeeeccCccchhhhhhhHHHHHHHHHHHHHc--CCCceEEEEeecCCccCCCCceEEEEEEEECCcEEEcceec-
Confidence 65 46778 88887766555 468999999999999999779999999999999999 996
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHH
Q 019990 303 LKVDEFSRAKMDATAEELAEEKTL 326 (332)
Q Consensus 303 ~~l~~~E~~~l~~s~~~i~~~~~~ 326 (332)
++|+++|+++|++|++.|++.++.
T Consensus 304 ~~L~~~E~~~l~~s~~~l~~~~~~ 327 (330)
T 3ldh_A 304 MKLKPDEEQQLQKSATTLWDIQKD 327 (330)
T ss_dssp CCCCHHHHHHHHHHHHHHHHHHHT
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999998874
|
| >1ur5_A Malate dehydrogenase; oxidoreductase, tricarboxylic acid cycle; HET: NAD; 1.75A {Chloroflexus aurantiacus} SCOP: c.2.1.5 d.162.1.1 PDB: 1uxg_A* 1guy_A* 1uxk_A* 1uxh_A* 1uxj_A* 1uxi_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.8e-54 Score=396.25 Aligned_cols=299 Identities=22% Similarity=0.340 Sum_probs=259.0
Q ss_pred cEEEEEcCCChhHHHHHHHHHhcccCCCCCCeEEEEEecccchhhhhhhHhhhhhhccCC--ccceEEeCCHHHHhCCCc
Q 019990 6 LRVLVTGAAGQIGYALVPMIARGIMLGPDQPVILHMLDIEPAAEALNGVKMELIDAAFPL--LKGVVATTDVVEACKDVN 83 (332)
Q Consensus 6 ~kI~VtGaaG~IGs~l~~~L~~~~~~~~~~~~~i~l~D~~~~~~~~~~~~~dl~~~~~~~--~~~v~~~~~~~~a~~~aD 83 (332)
+||+|+|| |.+|++++..|+..+++ +++|+|+++ +++++..+|+.+...+. ...++.+++. +++++||
T Consensus 3 ~kI~VIGa-G~vG~~~a~~la~~g~~------~v~L~Di~~--~~~~g~~~dl~~~~~~~~~~~~i~~t~d~-~a~~~aD 72 (309)
T 1ur5_A 3 KKISIIGA-GFVGSTTAHWLAAKELG------DIVLLDIVE--GVPQGKALDLYEASPIEGFDVRVTGTNNY-ADTANSD 72 (309)
T ss_dssp CEEEEECC-SHHHHHHHHHHHHTTCS------EEEEECSSS--SHHHHHHHHHHTTHHHHTCCCCEEEESCG-GGGTTCS
T ss_pred CEEEEECC-CHHHHHHHHHHHHCCCC------eEEEEeCCc--cHHHHHHHhHHHhHhhcCCCeEEEECCCH-HHHCCCC
Confidence 69999995 99999999999888753 699999964 46778888988754222 2346665675 8899999
Q ss_pred EEEEecCCCCCCCCChhHHHhhhHHHHHHHHHHHHhhcCCCcEEEEEeCChhhHHHHHHHHCCCCCCCcEEEe-ecccHH
Q 019990 84 IAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEKHAAPNCKVLVVANPANTNALILKEFAPSIPAKNITCL-TRLDHN 162 (332)
Q Consensus 84 iVi~~ag~~~~~~~~~~~~~~~N~~~~~~i~~~i~~~~~~~~~viv~snp~~~~~~~~~~~~~~~~~~~i~~~-t~l~~~ 162 (332)
+||+++|.|+++|++|.+++..|+++++++++.+++++ |+++++++|||++.+++++++. +++|++|++|. |.||+.
T Consensus 73 ~Vi~a~g~p~~~g~~r~dl~~~n~~i~~~i~~~i~~~~-p~a~vi~~tNPv~~~t~~~~~~-~~~~~~rviG~gt~LD~~ 150 (309)
T 1ur5_A 73 VIVVTSGAPRKPGMSREDLIKVNADITRACISQAAPLS-PNAVIIMVNNPLDAMTYLAAEV-SGFPKERVIGQAGVLDAA 150 (309)
T ss_dssp EEEECCCC--------CHHHHHHHHHHHHHHHHHGGGC-TTCEEEECCSSHHHHHHHHHHH-HCCCGGGEEECCHHHHHH
T ss_pred EEEEcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHhhC-CCeEEEEcCCchHHHHHHHHHH-cCCCHHHEEECCcchHHH
Confidence 99999999999999999999999999999999999998 8999999999999999999998 78999997777 999999
Q ss_pred HHHHHHHHHcCCCCCCeeeeEEEecCCCceeecccCcccccCCCCcchhhhccccccchhHHHHHHHhhHHHHHH--hcC
Q 019990 163 RAMGQISERLKVHVSDVKNVIIWGNHSSTQYPDVNHATVTTSKGEKPVREAVADDNWLNTEFITTVQQRGAAIIK--ARK 240 (332)
Q Consensus 163 r~~~~~a~~~~v~~~~v~~~~V~G~hg~~~v~~~s~~~v~~~~~~~p~~~~~~~~~~~~~~~~~~v~~~~~~i~~--~~g 240 (332)
|+++++|+++|+++.+|+.+ |||+||++++|+||++++ +|+|+.+++.++. .+++.+++++++++|++ .||
T Consensus 151 r~~~~la~~lgv~~~~v~~~-v~G~Hg~t~~p~~s~~~v----~g~~~~~~~~~~~--~~~~~~~v~~~g~eii~~~~kg 223 (309)
T 1ur5_A 151 RYRTFIAMEAGVSVEDVQAM-LMGGHGDEMVPLPRFSCI----SGIPVSEFIAPDR--LAQIVERTRKGGGEIVNLLKTG 223 (309)
T ss_dssp HHHHHHHHHHTCCGGGEEEC-CEECSGGGEECCGGGEEE----TTEEGGGTSCHHH--HHHHHHHHHTHHHHHHHHHSSC
T ss_pred HHHHHHHHHhCCChhheeEE-EecCcCCceeeeeeccee----CCEeHHHHcCHhH--HHHHHHHHHhhhHHhhhhccCC
Confidence 99999999999999999986 699999999999999999 9999999876654 47899999999999999 677
Q ss_pred CcchHHHHHHHHHHHHHHHcCCCCCcEEEEEEeecCCCCCCCCeEEEEeEEEe-CCeEEEecCCCCCHHHHHHHHHHHHH
Q 019990 241 LSSALSAASSACDHIRDWVLGTPKGTWVSMGVYSDGSYGIPEGLIYSFPVTCE-KGEWSIVKGLKVDEFSRAKMDATAEE 319 (332)
Q Consensus 241 ~~~~~~~a~a~~~~i~~~~~~~~~~~i~~~~v~~~g~yg~~~~~~~s~Pv~~~-~G~~~~~~~~~l~~~E~~~l~~s~~~ 319 (332)
++++++|.++++++.+++.+ +++++|++++++|+||+ +++|||+||++| +|++++++ ++|+++|+++|++|++.
T Consensus 224 -s~~~~~a~a~~~~~~ai~~~--~~~~~~~~~~~~g~~g~-~~~~~~vP~~ig~~Gv~~i~~-~~l~~~e~~~l~~s~~~ 298 (309)
T 1ur5_A 224 -SAYYAPAAATAQMVEAVLKD--KKRVMPVAAYLTGQYGL-NDIYFGVPVILGAGGVEKILE-LPLNEEEMALLNASAKA 298 (309)
T ss_dssp -CCCHHHHHHHHHHHHHHHTT--CCEEEEEEEEEESGGGC-EEEEEEEEEEEETTEEEEECC-CCCCHHHHHHHHHHHHH
T ss_pred -CcHHHHHHHHHHHHHHHHcC--CCcEEEEEEEecCccCC-cceEEEEEEEEeCCceEEecC-CCCCHHHHHHHHHHHHH
Confidence 55678899999988887764 57999999999999999 899999999999 99999996 99999999999999999
Q ss_pred HHHHHHHHh
Q 019990 320 LAEEKTLAY 328 (332)
Q Consensus 320 i~~~~~~~~ 328 (332)
|++.++...
T Consensus 299 l~~~~~~~~ 307 (309)
T 1ur5_A 299 VRATLDTLK 307 (309)
T ss_dssp HHHHHHHHC
T ss_pred HHHHHHHHh
Confidence 999998764
|
| >1t2d_A LDH-P, L-lactate dehydrogenase; ternary complex, oxidoreductase; HET: NAD; 1.10A {Plasmodium falciparum} SCOP: c.2.1.5 d.162.1.1 PDB: 1t25_A* 1t26_A* 1t2c_A* 1t24_A* 2x8l_A 2ydn_A* 2a94_A* 1u4s_A* 1u5a_A* 1u5c_A* 1u4o_A* 1t2e_A* 1xiv_A* 1ceq_A 1ldg_A* 1cet_A* 1oc4_A* 2a92_A* 2aa3_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.3e-52 Score=384.98 Aligned_cols=301 Identities=20% Similarity=0.311 Sum_probs=266.2
Q ss_pred CCcEEEEEcCCChhHHHHHHHHHhcccCCCCCCeEEEEEecccchhhhhhhHhhhhhhccC--CccceEEeCCHHHHhCC
Q 019990 4 NPLRVLVTGAAGQIGYALVPMIARGIMLGPDQPVILHMLDIEPAAEALNGVKMELIDAAFP--LLKGVVATTDVVEACKD 81 (332)
Q Consensus 4 ~~~kI~VtGaaG~IGs~l~~~L~~~~~~~~~~~~~i~l~D~~~~~~~~~~~~~dl~~~~~~--~~~~v~~~~~~~~a~~~ 81 (332)
.++||+|+|| |.+|+.++..|+..+++ +|+|+|++. +++++...++.+...+ ....+..+++. +++++
T Consensus 3 ~~~kI~VIGa-G~vG~~ia~~la~~g~~------~v~L~Di~~--~~l~~~~~~l~~~~~~~~~~~~i~~t~d~-~al~~ 72 (322)
T 1t2d_A 3 PKAKIVLVGS-GMIGGVMATLIVQKNLG------DVVLFDIVK--NMPHGKALDTSHTNVMAYSNCKVSGSNTY-DDLAG 72 (322)
T ss_dssp CCCEEEEECC-SHHHHHHHHHHHHTTCC------EEEEECSSS--SHHHHHHHHHHTHHHHHTCCCCEEEECCG-GGGTT
T ss_pred CCCEEEEECC-CHHHHHHHHHHHhCCCC------eEEEEeCCH--HHHHHHHHHHHhhhhhcCCCcEEEECCCH-HHhCC
Confidence 5679999995 99999999999988763 699999974 5678888888775322 22456666776 88999
Q ss_pred CcEEEEecCCCCCCCCC-----hhHHHhhhHHHHHHHHHHHHhhcCCCcEEEEEeCChhhHHHHHHHHCCCCCCCcEEEe
Q 019990 82 VNIAVMVGGFPRKEGME-----RKDVMSKNVSIYKAQASALEKHAAPNCKVLVVANPANTNALILKEFAPSIPAKNITCL 156 (332)
Q Consensus 82 aDiVi~~ag~~~~~~~~-----~~~~~~~N~~~~~~i~~~i~~~~~~~~~viv~snp~~~~~~~~~~~~~~~~~~~i~~~ 156 (332)
||+||+++|.|+++|++ |.+++..|+++++++++.+.+++ |+++++++|||++.+++++++. +++|++|++|.
T Consensus 73 aD~Vi~a~g~p~k~g~~~qe~~r~dl~~~n~~i~~~i~~~i~~~~-p~a~iiv~tNP~~~~t~~~~~~-~g~~~~rviG~ 150 (322)
T 1t2d_A 73 ADVVIVTAGFTKAPGKSDKEWNRDDLLPLNNKIMIEIGGHIKKNC-PNAFIIVVTNPVDVMVQLLHQH-SGVPKNKIIGL 150 (322)
T ss_dssp CSEEEECCSCSSCTTCCSTTCCGGGGHHHHHHHHHHHHHHHHHHC-TTSEEEECSSSHHHHHHHHHHH-HCCCGGGEEEC
T ss_pred CCEEEEeCCCCCCCCCCcccccHHHHHHHHHHHHHHHHHHHHHHC-CCeEEEEecCChHHHHHHHHHh-cCCChHHEEec
Confidence 99999999999999988 99999999999999999999998 8999999999999999999887 78999997766
Q ss_pred -ecccHHHHHHHHHHHcCCCCCCeeeeEEEecCCCceeecccCcccccCCCCcchhhhcccccc----chhHHHHHHHhh
Q 019990 157 -TRLDHNRAMGQISERLKVHVSDVKNVIIWGNHSSTQYPDVNHATVTTSKGEKPVREAVADDNW----LNTEFITTVQQR 231 (332)
Q Consensus 157 -t~l~~~r~~~~~a~~~~v~~~~v~~~~V~G~hg~~~v~~~s~~~v~~~~~~~p~~~~~~~~~~----~~~~~~~~v~~~ 231 (332)
|.+|+.|+++++|+++|+++.+|+.+ |||+||++++|.||++.+ +|+|+.+++.+. | ..+++.++++++
T Consensus 151 gt~ld~~R~~~~la~~lgv~~~~v~~~-v~G~HG~~~~p~~s~~~v----~g~~~~~~~~~~-~~~~~~~~~~~~~v~~~ 224 (322)
T 1t2d_A 151 GGVLDTSRLKYYISQKLNVCPRDVNAH-IVGAHGNKMVLLKRYITV----GGIPLQEFINNK-LISDAELEAIFDRTVNT 224 (322)
T ss_dssp CHHHHHHHHHHHHHHHHTSCGGGEECC-EEBCSSTTCEECGGGCEE----TTEEHHHHHHTT-SSCHHHHHHHHHHHHTH
T ss_pred cCcccHHHHHHHHHHHhCCCHHHeEEE-EEcCCCCcEEeeHHHceE----CcEeHHHhcccc-CCCHHHHHHHHHHHHHH
Confidence 89999999999999999999999987 699999999999999999 999999986543 3 246788999999
Q ss_pred HHHHHHhcCCcchHHHHHHHHHHHHHHHcCCCCCcEEEEEEeecCCCCCCCCeEEEEeEEEe-CCeEEEecCCCCCHHHH
Q 019990 232 GAAIIKARKLSSALSAASSACDHIRDWVLGTPKGTWVSMGVYSDGSYGIPEGLIYSFPVTCE-KGEWSIVKGLKVDEFSR 310 (332)
Q Consensus 232 ~~~i~~~~g~~~~~~~a~a~~~~i~~~~~~~~~~~i~~~~v~~~g~yg~~~~~~~s~Pv~~~-~G~~~~~~~~~l~~~E~ 310 (332)
+++|++.|| ++++++|.++++++.+++.+ +++++|++++++|+||+ .++|||+||+++ +|++++++ ++|+++|+
T Consensus 225 g~eii~~kg-s~~~~~a~a~~~~~~ai~~~--~~~v~~~s~~~~g~~g~-~~~~~~vP~~ig~~Gv~~i~~-~~l~~~e~ 299 (322)
T 1t2d_A 225 ALEIVNLHA-SPYVAPAAAIIEMAESYLKD--LKKVLICSTLLEGQYGH-SDIFGGTPVVLGANGVEQVIE-LQLNSEEK 299 (322)
T ss_dssp HHHHHHHTS-SCCHHHHHHHHHHHHHHHTT--CCEEEEEEEEEESGGGC-EEEEEEEEEEEETTEEEEECC-CCCCHHHH
T ss_pred HHHHHhccC-chHHHHHHHHHHHHHHHHhC--CCCEEEEEEEecCccCC-CceEEEEEEEEeCCeeEEeCC-CCCCHHHH
Confidence 999999998 55678899999988887764 57999999999999999 799999999999 99999996 99999999
Q ss_pred HHHHHHHHHHHHHHHHH
Q 019990 311 AKMDATAEELAEEKTLA 327 (332)
Q Consensus 311 ~~l~~s~~~i~~~~~~~ 327 (332)
++|++|++.|++.++.+
T Consensus 300 ~~l~~s~~~L~~~~~~~ 316 (322)
T 1t2d_A 300 AKFDEAIAETKRMKALA 316 (322)
T ss_dssp HHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHh
Confidence 99999999999998765
|
| >1pzg_A LDH, lactate dehydrogenase; apicomplexa, APAD, tetramer, rossmann fold, oxidoreductase; HET: CME A3D; 1.60A {Toxoplasma gondii} SCOP: c.2.1.5 d.162.1.1 PDB: 1pzf_A* 1pze_A* 1pzh_A* 3om9_A* 1sov_A 1sow_A* 3czm_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1e-51 Score=382.24 Aligned_cols=306 Identities=19% Similarity=0.311 Sum_probs=267.4
Q ss_pred CCCCCcEEEEEcCCChhHHHHHHHHHhcccCCCCCCeEEEEEecccchhhhhhhHhhhhhhccC--CccceEEeCCHHHH
Q 019990 1 MAKNPLRVLVTGAAGQIGYALVPMIARGIMLGPDQPVILHMLDIEPAAEALNGVKMELIDAAFP--LLKGVVATTDVVEA 78 (332)
Q Consensus 1 m~~~~~kI~VtGaaG~IGs~l~~~L~~~~~~~~~~~~~i~l~D~~~~~~~~~~~~~dl~~~~~~--~~~~v~~~~~~~~a 78 (332)
|+.+++||+|+|| |.+|++++..|+..+++ +|+|+|+++ +++++...++.+.... ...++..++++.++
T Consensus 5 ~~~~~~kI~VIGa-G~vG~~lA~~la~~g~~------~V~L~D~~~--~~~~~~~~~l~~~~~~~~~~~~i~~t~d~~ea 75 (331)
T 1pzg_A 5 LVQRRKKVAMIGS-GMIGGTMGYLCALRELA------DVVLYDVVK--GMPEGKALDLSHVTSVVDTNVSVRAEYSYEAA 75 (331)
T ss_dssp CCSCCCEEEEECC-SHHHHHHHHHHHHHTCC------EEEEECSSS--SHHHHHHHHHHHHHHHTTCCCCEEEECSHHHH
T ss_pred cCCCCCEEEEECC-CHHHHHHHHHHHhCCCC------eEEEEECCh--hHHHHHHHHHHhhhhccCCCCEEEEeCCHHHH
Confidence 4445689999995 99999999999987753 699999975 4677767787775322 23467777888779
Q ss_pred hCCCcEEEEecCCCCCCCC-----ChhHHHhhhHHHHHHHHHHHHhhcCCCcEEEEEeCChhhHHHHHHHHCCCCCCCcE
Q 019990 79 CKDVNIAVMVGGFPRKEGM-----ERKDVMSKNVSIYKAQASALEKHAAPNCKVLVVANPANTNALILKEFAPSIPAKNI 153 (332)
Q Consensus 79 ~~~aDiVi~~ag~~~~~~~-----~~~~~~~~N~~~~~~i~~~i~~~~~~~~~viv~snp~~~~~~~~~~~~~~~~~~~i 153 (332)
+++||+||+++|.|+++++ +|.+++..|+++++++++.+.+++ |+++++++|||++.+++++++. +++|++|+
T Consensus 76 ~~~aDiVi~a~g~p~~~g~~~~~~~r~dl~~~n~~i~~~i~~~i~~~~-p~a~vi~~tNP~~~~t~~~~~~-~~~~~~rv 153 (331)
T 1pzg_A 76 LTGADCVIVTAGLTKVPGKPDSEWSRNDLLPFNSKIIREIGQNIKKYC-PKTFIIVVTNPLDCMVKVMCEA-SGVPTNMI 153 (331)
T ss_dssp HTTCSEEEECCSCSSCTTCCGGGCCGGGGHHHHHHHHHHHHHHHHHHC-TTCEEEECCSSHHHHHHHHHHH-HCCCGGGE
T ss_pred hCCCCEEEEccCCCCCCCcccCCCCHHHHHHHHHHHHHHHHHHHHHHC-CCcEEEEEcCchHHHHHHHHHh-cCCChhcE
Confidence 9999999999999999998 899999999999999999999998 8999999999999999999887 78999997
Q ss_pred EEe-ecccHHHHHHHHHHHcCCCCCCeeeeEEEecCCCceeecccCcccccCCCCcchhhhcccccc----chhHHHHHH
Q 019990 154 TCL-TRLDHNRAMGQISERLKVHVSDVKNVIIWGNHSSTQYPDVNHATVTTSKGEKPVREAVADDNW----LNTEFITTV 228 (332)
Q Consensus 154 ~~~-t~l~~~r~~~~~a~~~~v~~~~v~~~~V~G~hg~~~v~~~s~~~v~~~~~~~p~~~~~~~~~~----~~~~~~~~v 228 (332)
+|. |.||+.|+++++|+++|+++.+|+.+ |||+||++++|+||++++ +|+|+.+++.++ | ..+++.+++
T Consensus 154 iG~gt~LD~~R~~~~la~~lgv~~~~v~~~-v~G~Hg~~~~p~~s~~~v----~G~~~~~~~~~~-~~~~~~~~~~~~~~ 227 (331)
T 1pzg_A 154 CGMACMLDSGRFRRYVADALSVSPRDVQAT-VIGTHGDCMVPLVRYITV----NGYPIQKFIKDG-VVTEKQLEEIAEHT 227 (331)
T ss_dssp EECCHHHHHHHHHHHHHHHHTSCGGGEECC-EEBCSSTTCEECGGGCEE----TTEEHHHHHHTT-SSCHHHHHHHHHHH
T ss_pred EeccchHHHHHHHHHHHHHhCCCHHHceEE-EecCCCCCEeeeeecceE----CCEEHHHHhhcc-cCCHHHHHHHHHHH
Confidence 777 89999999999999999999999986 699999999999999999 999999886432 2 246788889
Q ss_pred HhhHHHHHH--hcCCcchHHHHHHHHHHHHHHHcCCCCCcEEEEEEeecCCCCCCCCeEEEEeEEEe-CCeEEEecCCCC
Q 019990 229 QQRGAAIIK--ARKLSSALSAASSACDHIRDWVLGTPKGTWVSMGVYSDGSYGIPEGLIYSFPVTCE-KGEWSIVKGLKV 305 (332)
Q Consensus 229 ~~~~~~i~~--~~g~~~~~~~a~a~~~~i~~~~~~~~~~~i~~~~v~~~g~yg~~~~~~~s~Pv~~~-~G~~~~~~~~~l 305 (332)
++++++|++ .|| ++++++|.++++++.+++.+ ++++++++++++|+||+ +++|||+||+++ +|++++++ ++|
T Consensus 228 ~~~g~eii~~~~kg-st~~~~a~a~~~ii~ai~~~--~~~~~~~~v~~~G~~g~-~~~~~~vP~~vg~~Gv~~i~~-~~L 302 (331)
T 1pzg_A 228 KVSGGEIVRFLGQG-SAYYAPAASAVAMATSFLND--EKRVIPCSVYCNGEYGL-KDMFIGLPAVIGGAGIERVIE-LEL 302 (331)
T ss_dssp HHHHHHHHHHHSSS-CCCHHHHHHHHHHHHHHHTT--CCEEEEEEEEEESGGGC-EEEEEEEEEEEETTEEEEECC-CCC
T ss_pred HhccHHHHHhhcCC-CccchHHHHHHHHHHHHHhC--CCcEEEEEEEecCccCC-CceEEEEEEEEeCCeeEEecC-CCC
Confidence 999999999 677 55678889999988887664 57999999999999999 899999999999 99999996 999
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHh
Q 019990 306 DEFSRAKMDATAEELAEEKTLAY 328 (332)
Q Consensus 306 ~~~E~~~l~~s~~~i~~~~~~~~ 328 (332)
+++|+++|++|++.|++.++...
T Consensus 303 ~~~e~~~l~~s~~~l~~~~~~~~ 325 (331)
T 1pzg_A 303 NEEEKKQFQKSVDDVMALNKAVA 325 (331)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHHh
Confidence 99999999999999999998764
|
| >1mld_A Malate dehydrogenase; oxidoreductase(NAD(A)-CHOH(D)); HET: CIT; 1.83A {Sus scrofa} SCOP: c.2.1.5 d.162.1.1 PDB: 2dfd_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=8e-52 Score=380.36 Aligned_cols=298 Identities=22% Similarity=0.323 Sum_probs=254.3
Q ss_pred cEEEEEcCCChhHHHHHHHHHhcccCCCCCCeEEEEEecccchhhhhhhHhhhhhhccCCccceEEe---CCHHHHhCCC
Q 019990 6 LRVLVTGAAGQIGYALVPMIARGIMLGPDQPVILHMLDIEPAAEALNGVKMELIDAAFPLLKGVVAT---TDVVEACKDV 82 (332)
Q Consensus 6 ~kI~VtGaaG~IGs~l~~~L~~~~~~~~~~~~~i~l~D~~~~~~~~~~~~~dl~~~~~~~~~~v~~~---~~~~~a~~~a 82 (332)
|||+|+||+|+||++++..|+..++. .+|+|+|++. .++..+||.|...+ .++... ++..+++++|
T Consensus 1 mKI~IiGa~G~VG~~la~~L~~~~~~-----~ev~L~Di~~----~~~~a~dL~~~~~~--~~l~~~~~t~d~~~a~~~a 69 (314)
T 1mld_A 1 AKVAVLGASGGIGQPLSLLLKNSPLV-----SRLTLYDIAH----TPGVAADLSHIETR--ATVKGYLGPEQLPDCLKGC 69 (314)
T ss_dssp CEEEEETTTSTTHHHHHHHHHTCTTC-----SEEEEEESSS----HHHHHHHHTTSSSS--CEEEEEESGGGHHHHHTTC
T ss_pred CEEEEECCCChHHHHHHHHHHhCCCC-----cEEEEEeCCc----cHHHHHHHhccCcC--ceEEEecCCCCHHHHhCCC
Confidence 58999997799999999999987753 2899999964 46788899886533 245542 4677789999
Q ss_pred cEEEEecCCCCCCCCChhHHHhhhHHHHHHHHHHHHhhcCCCcEEEEEeCChhhHHH----HHHHHCCCCCCCcEEEeec
Q 019990 83 NIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEKHAAPNCKVLVVANPANTNAL----ILKEFAPSIPAKNITCLTR 158 (332)
Q Consensus 83 DiVi~~ag~~~~~~~~~~~~~~~N~~~~~~i~~~i~~~~~~~~~viv~snp~~~~~~----~~~~~~~~~~~~~i~~~t~ 158 (332)
|+||+++|.+++++++|.+++..|+++++++++.+++++ |+++++++|||++.+++ .+++. +++|++|++|.|.
T Consensus 70 DvVvi~ag~~~~~g~~r~dl~~~n~~i~~~i~~~i~~~~-p~a~viv~sNPv~~~~~i~~~~~~~~-~~~p~~rvig~t~ 147 (314)
T 1mld_A 70 DVVVIPAGVPRKPGMTRDDLFNTNATIVATLTAACAQHC-PDAMICIISNPVNSTIPITAEVFKKH-GVYNPNKIFGVTT 147 (314)
T ss_dssp SEEEECCSCCCCTTCCGGGGHHHHHHHHHHHHHHHHHHC-TTSEEEECSSCHHHHHHHHHHHHHHT-TCCCTTSEEECCH
T ss_pred CEEEECCCcCCCCCCcHHHHHHHHHHHHHHHHHHHHhhC-CCeEEEEECCCcchhHHHHHHHHHHc-CCCCcceEEEeec
Confidence 999999999999999999999999999999999999998 89999999999999985 34554 6799999888899
Q ss_pred ccHHHHHHHHHHHcCCCCCCeeeeEEEecC-CCceeecccCcccccCCCCcchhhhccccccchhHHHHHHHhhHHHHHH
Q 019990 159 LDHNRAMGQISERLKVHVSDVKNVIIWGNH-SSTQYPDVNHATVTTSKGEKPVREAVADDNWLNTEFITTVQQRGAAIIK 237 (332)
Q Consensus 159 l~~~r~~~~~a~~~~v~~~~v~~~~V~G~h-g~~~v~~~s~~~v~~~~~~~p~~~~~~~~~~~~~~~~~~v~~~~~~i~~ 237 (332)
||+.|+++++|+++|++|++|+.+ |||+| |++++|+||+++. . .+ +.++. .+++.+++++++++|++
T Consensus 148 Ld~~r~~~~la~~l~v~~~~v~~~-v~G~H~G~~~~p~~s~~~~----~----~~-~~~~~--~~~~~~~v~~~g~eii~ 215 (314)
T 1mld_A 148 LDIVRANAFVAELKGLDPARVSVP-VIGGHAGKTIIPLISQCTP----K----VD-FPQDQ--LSTLTGRIQEAGTEVVK 215 (314)
T ss_dssp HHHHHHHHHHHHHTTCCGGGCBCC-EEECSSGGGEEECGGGCBS----C----CC-CCHHH--HHHHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHhCcChHhEEEE-EccCCCCCcEeeecccCCC----c----cc-CCHHH--HHHHHHHHHHHHHHHHh
Confidence 999999999999999999999976 69999 7999999999874 2 12 23333 37899999999999999
Q ss_pred hc-CC-cchHHHHHHHHHHHHHHHcCCC-CCcEEEEEEeecCCCCCCCCeEEEEeEEEe-CCeEEEecCC-CCCHHHHHH
Q 019990 238 AR-KL-SSALSAASSACDHIRDWVLGTP-KGTWVSMGVYSDGSYGIPEGLIYSFPVTCE-KGEWSIVKGL-KVDEFSRAK 312 (332)
Q Consensus 238 ~~-g~-~~~~~~a~a~~~~i~~~~~~~~-~~~i~~~~v~~~g~yg~~~~~~~s~Pv~~~-~G~~~~~~~~-~l~~~E~~~ 312 (332)
.| |. ++++++|.++++++.+++.+.+ ++.++++ ++++|+| ++++|||+||++| +|++++++ + +|+++|+++
T Consensus 216 ~k~~~g~t~~~~a~a~~~~~~ai~~~~~g~~~v~~~-~~~~g~y--~~~~~~~~P~~ig~~Gv~~i~~-l~~l~~~e~~~ 291 (314)
T 1mld_A 216 AKAGAGSATLSMAYAGARFVFSLVDAMNGKEGVVEC-SFVKSQE--TDCPYFSTPLLLGKKGIEKNLG-IGKISPFEEKM 291 (314)
T ss_dssp HHTTSCSCCHHHHHHHHHHHHHHHHHHHTCTTCEEE-EEEECCS--SSSSEEEEEEEEETTEEEEECC-CCSCCHHHHHH
T ss_pred hhcCCCCcchhHHHHHHHHHHHHHcCcCCCcceEEE-EEeCCcc--CCceEEEEEEEEeCCeeEEecC-CCCCCHHHHHH
Confidence 77 32 3457889999999988887532 3468999 7999999 5899999999999 99999975 8 999999999
Q ss_pred HHHHHHHHHHHHHHHhhhhC
Q 019990 313 MDATAEELAEEKTLAYSCLN 332 (332)
Q Consensus 313 l~~s~~~i~~~~~~~~~~~~ 332 (332)
|++|++.|++.++.+.+|.+
T Consensus 292 l~~s~~~l~~~~~~~~~~~~ 311 (314)
T 1mld_A 292 IAEAIPELKASIKKGEEFVK 311 (314)
T ss_dssp HHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHh
Confidence 99999999999999998863
|
| >2hjr_A Malate dehydrogenase; malaria, structural genomics, structural genomics consortium, SGC, oxidoreductase; HET: CIT APR; 2.20A {Cryptosporidium parvum} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.2e-50 Score=374.70 Aligned_cols=301 Identities=22% Similarity=0.324 Sum_probs=263.8
Q ss_pred CcEEEEEcCCChhHHHHHHHHHhcccCCCCCCeEEEEEecccchhhhhhhHhhhhhhccC--CccceEEeCCHHHHhCCC
Q 019990 5 PLRVLVTGAAGQIGYALVPMIARGIMLGPDQPVILHMLDIEPAAEALNGVKMELIDAAFP--LLKGVVATTDVVEACKDV 82 (332)
Q Consensus 5 ~~kI~VtGaaG~IGs~l~~~L~~~~~~~~~~~~~i~l~D~~~~~~~~~~~~~dl~~~~~~--~~~~v~~~~~~~~a~~~a 82 (332)
++||+|+|| |.+|++++..|+..+++ +|+|+|++. +++++..+++.+.... ....+..+++. +++++|
T Consensus 14 ~~kI~ViGa-G~vG~~iA~~la~~g~~------~V~L~Di~~--~~l~~~~~~l~~~~~~~~~~~~i~~t~d~-~al~~a 83 (328)
T 2hjr_A 14 RKKISIIGA-GQIGSTIALLLGQKDLG------DVYMFDIIE--GVPQGKALDLNHCMALIGSPAKIFGENNY-EYLQNS 83 (328)
T ss_dssp CCEEEEECC-SHHHHHHHHHHHHTTCC------EEEEECSST--THHHHHHHHHHHHHHHHTCCCCEEEESCG-GGGTTC
T ss_pred CCEEEEECC-CHHHHHHHHHHHhCCCC------eEEEEECCH--HHHHHHHHHHHhHhhccCCCCEEEECCCH-HHHCCC
Confidence 469999995 99999999999988763 699999964 5677777788775321 23457766776 889999
Q ss_pred cEEEEecCCCCCCCCChhHHHhhhHHHHHHHHHHHHhhcCCCcEEEEEeCChhhHHHHHHHHCCCCCCCcEEEe-ecccH
Q 019990 83 NIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEKHAAPNCKVLVVANPANTNALILKEFAPSIPAKNITCL-TRLDH 161 (332)
Q Consensus 83 DiVi~~ag~~~~~~~~~~~~~~~N~~~~~~i~~~i~~~~~~~~~viv~snp~~~~~~~~~~~~~~~~~~~i~~~-t~l~~ 161 (332)
|+||.++|.|+++|++|.+++..|+++++++++.+.+++ |+++++++|||++.+++++++. +++||+|++|. |.+|+
T Consensus 84 D~VI~avg~p~k~g~tr~dl~~~n~~i~~~i~~~i~~~~-p~a~viv~tNP~~~~t~~~~~~-~~~~~~rviG~~t~Ld~ 161 (328)
T 2hjr_A 84 DVVIITAGVPRKPNMTRSDLLTVNAKIVGSVAENVGKYC-PNAFVICITNPLDAMVYYFKEK-SGIPANKVCGMSGVLDS 161 (328)
T ss_dssp SEEEECCSCCCCTTCCSGGGHHHHHHHHHHHHHHHHHHC-TTCEEEECCSSHHHHHHHHHHH-HCCCGGGEEESCHHHHH
T ss_pred CEEEEcCCCCCCCCCchhhHHhhhHHHHHHHHHHHHHHC-CCeEEEEecCchHHHHHHHHHh-cCCChhhEEEeCcHHHH
Confidence 999999999999999999999999999999999999998 8999999999999999999887 78999998777 69999
Q ss_pred HHHHHHHHHHcCCCCCCeeeeEEEecCCCceeecccCcccccCCCCcchhhhcccccc----chhHHHHHHHhhHHHHHH
Q 019990 162 NRAMGQISERLKVHVSDVKNVIIWGNHSSTQYPDVNHATVTTSKGEKPVREAVADDNW----LNTEFITTVQQRGAAIIK 237 (332)
Q Consensus 162 ~r~~~~~a~~~~v~~~~v~~~~V~G~hg~~~v~~~s~~~v~~~~~~~p~~~~~~~~~~----~~~~~~~~v~~~~~~i~~ 237 (332)
.|+++++|+++|+++.+|+.+ |||+||++++|+||++++ +|+|+.+++.+ .| ..+++.+++++++++|++
T Consensus 162 ~R~~~~la~~lgv~~~~v~~~-v~G~Hg~t~~p~~s~~~v----~G~~~~~~~~~-~~~~~~~~~~~~~~v~~~g~eii~ 235 (328)
T 2hjr_A 162 ARFRCNLSRALGVKPSDVSAI-VVGGHGDEMIPLTSSVTI----GGILLSDFVEQ-GKITHSQINEIIKKTAFGGGEIVE 235 (328)
T ss_dssp HHHHHHHHHHHTSCGGGEECC-EEBCSSTTCEECGGGCEE----TTEEHHHHHHT-TSSCHHHHHHHHHHHHTHHHHHHH
T ss_pred HHHHHHHHHHhCCCHHHeeEE-EecCCCCceeeeeeeceE----CCEEHHHHhhc-cCCCHHHHHHHHHHHHhhHHHHHh
Confidence 999999999999999999987 699999999999999999 99999998654 33 236788889999999999
Q ss_pred --hcCCcchHHHHHHHHHHHHHHHcCCCCCcEEEEEEeecCCCCCCCCeEEEEeEEEe-CCeEEEecCCCCCHHHHHHHH
Q 019990 238 --ARKLSSALSAASSACDHIRDWVLGTPKGTWVSMGVYSDGSYGIPEGLIYSFPVTCE-KGEWSIVKGLKVDEFSRAKMD 314 (332)
Q Consensus 238 --~~g~~~~~~~a~a~~~~i~~~~~~~~~~~i~~~~v~~~g~yg~~~~~~~s~Pv~~~-~G~~~~~~~~~l~~~E~~~l~ 314 (332)
.+| ++++++|.++++++.+++.+ +++++|++++.+|+||+ +++|||+||+++ +|++++++ ++|+++|+++|+
T Consensus 236 ~~~~g-s~~~~~a~a~~~i~~ai~~~--~~~v~~~~v~~~G~~g~-~~~~~~vP~~ig~~Gv~~i~~-~~L~~~e~~~l~ 310 (328)
T 2hjr_A 236 LLKTG-SAFYAPAASAVAMAQAYLKD--SKSVLVCSTYLTGQYNV-NNLFVGVPVVIGKNGIEDVVI-VNLSDDEKSLFS 310 (328)
T ss_dssp HHSSC-CCCHHHHHHHHHHHHHHHTT--CCEEEEEEEEEESGGGC-EEEEEEEEEEEETTEEEEECC-CCCCHHHHHHHH
T ss_pred hhCCC-chHHHHHHHHHHHHHHHHcC--CCcEEEEEEeecCccCC-CceEEEEEEEEeCCeeEEecC-CCCCHHHHHHHH
Confidence 466 44567889999988887664 57999999999999999 899999999999 99999996 999999999999
Q ss_pred HHHHHHHHHHHHHh
Q 019990 315 ATAEELAEEKTLAY 328 (332)
Q Consensus 315 ~s~~~i~~~~~~~~ 328 (332)
+|++.|++.++.+.
T Consensus 311 ~s~~~l~~~~~~~~ 324 (328)
T 2hjr_A 311 KSVESIQNLVQDLK 324 (328)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 99999999998875
|
| >1guz_A Malate dehydrogenase; oxidoreductase, tricarboxylic acid cycle, NAD; HET: NAD; 2.0A {Chlorobium vibrioforme} SCOP: c.2.1.5 d.162.1.1 PDB: 1gv1_A 1gv0_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=5.5e-51 Score=374.75 Aligned_cols=301 Identities=23% Similarity=0.372 Sum_probs=261.2
Q ss_pred cEEEEEcCCChhHHHHHHHHHhcccCCCCCCeEEEEEecccchhhhhhhHhhhhhhccC--CccceEEeCCHHHHhCCCc
Q 019990 6 LRVLVTGAAGQIGYALVPMIARGIMLGPDQPVILHMLDIEPAAEALNGVKMELIDAAFP--LLKGVVATTDVVEACKDVN 83 (332)
Q Consensus 6 ~kI~VtGaaG~IGs~l~~~L~~~~~~~~~~~~~i~l~D~~~~~~~~~~~~~dl~~~~~~--~~~~v~~~~~~~~a~~~aD 83 (332)
|||+|+|| |.+|++++..|...+. + .+|+++|++. +++++..+|+.+.... ...++..+++.. ++++||
T Consensus 1 mkI~VIGa-G~vG~~la~~la~~~~-g----~~V~l~D~~~--~~~~~~~~~l~~~~~~~~~~~~i~~t~d~~-~l~~aD 71 (310)
T 1guz_A 1 MKITVIGA-GNVGATTAFRLAEKQL-A----RELVLLDVVE--GIPQGKALDMYESGPVGLFDTKVTGSNDYA-DTANSD 71 (310)
T ss_dssp CEEEEECC-SHHHHHHHHHHHHTTC-C----SEEEEECSSS--SHHHHHHHHHHTTHHHHTCCCEEEEESCGG-GGTTCS
T ss_pred CEEEEECC-CHHHHHHHHHHHhCCC-C----CEEEEEeCCh--hHHHHHHHhHHhhhhcccCCcEEEECCCHH-HHCCCC
Confidence 58999995 9999999999987643 1 2899999975 4566766677654211 123455556664 499999
Q ss_pred EEEEecCCCCCCCCChhHHHhhhHHHHHHHHHHHHhhcCCCcEEEEEeCChhhHHHHHHHHCCCCCCCcEEEe-ecccHH
Q 019990 84 IAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEKHAAPNCKVLVVANPANTNALILKEFAPSIPAKNITCL-TRLDHN 162 (332)
Q Consensus 84 iVi~~ag~~~~~~~~~~~~~~~N~~~~~~i~~~i~~~~~~~~~viv~snp~~~~~~~~~~~~~~~~~~~i~~~-t~l~~~ 162 (332)
+||++++.|++++++|.+++..|+++++++++.+++++ |+++++++|||++.+++++++. +++|++|++|. |.+|+.
T Consensus 72 vViiav~~p~~~g~~r~dl~~~n~~i~~~i~~~i~~~~-~~~~viv~tNP~~~~~~~~~~~-~~~~~~rviG~gt~ld~~ 149 (310)
T 1guz_A 72 IVIITAGLPRKPGMTREDLLMKNAGIVKEVTDNIMKHS-KNPIIIVVSNPLDIMTHVAWVR-SGLPKERVIGMAGVLDAA 149 (310)
T ss_dssp EEEECCSCCCCTTCCHHHHHHHHHHHHHHHHHHHHHHC-SSCEEEECCSSHHHHHHHHHHH-HCSCGGGEEEECHHHHHH
T ss_pred EEEEeCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhC-CCcEEEEEcCchHHHHHHHHHh-cCCChHHEEECCCchHHH
Confidence 99999999999999999999999999999999999997 8999999999999999999987 78999997666 999999
Q ss_pred HHHHHHHHHcCCCCCCeeeeEEEecCCCceeecccCcccccCCCCcchhhhccccccchhHHHHHHHhhHHHHHH--hcC
Q 019990 163 RAMGQISERLKVHVSDVKNVIIWGNHSSTQYPDVNHATVTTSKGEKPVREAVADDNWLNTEFITTVQQRGAAIIK--ARK 240 (332)
Q Consensus 163 r~~~~~a~~~~v~~~~v~~~~V~G~hg~~~v~~~s~~~v~~~~~~~p~~~~~~~~~~~~~~~~~~v~~~~~~i~~--~~g 240 (332)
|+++++|+++|+++.+|+.+ |||+||++++|+||++++ +|+|+.+++.++. .+++.+++++++++|++ .||
T Consensus 150 r~~~~la~~l~v~~~~v~~~-v~G~Hg~~~~p~~s~~~v----~g~~~~~~~~~~~--~~~~~~~v~~~g~~ii~~~~kg 222 (310)
T 1guz_A 150 RFRSFIAMELGVSMQDINAC-VLGGHGDAMVPVVKYTTV----AGIPISDLLPAET--IDKLVERTRNGGAEIVEHLKQG 222 (310)
T ss_dssp HHHHHHHHHHTCCGGGEECC-EEECSGGGEEECGGGCEE----TTEEHHHHSCHHH--HHHHHHHHHTHHHHHHHHHSSS
T ss_pred HHHHHHHHHhCCCHHHeEEE-EEcccCCcEeeeeecccC----CCEEHHHHCCHHH--HHHHHHHHHHhHHHHHhhcCCC
Confidence 99999999999999999985 699999999999999999 9999999886654 47899999999999999 677
Q ss_pred CcchHHHHHHHHHHHHHHHcCCCCCcEEEEEEeecCCCCCCCCeEEEEeEEEe-CCeEEEecCCCCCHHHHHHHHHHHHH
Q 019990 241 LSSALSAASSACDHIRDWVLGTPKGTWVSMGVYSDGSYGIPEGLIYSFPVTCE-KGEWSIVKGLKVDEFSRAKMDATAEE 319 (332)
Q Consensus 241 ~~~~~~~a~a~~~~i~~~~~~~~~~~i~~~~v~~~g~yg~~~~~~~s~Pv~~~-~G~~~~~~~~~l~~~E~~~l~~s~~~ 319 (332)
++++++|+++++++.+++.+ +++++|++++++|+||+ +++|||+||+++ +|++++++ ++|+++|+++|++|++.
T Consensus 223 -s~~~~~a~a~~~~~~ai~~~--~~~~~~~~~~~~g~~g~-~~~~~~~P~~ig~~Gv~~i~~-~~l~~~e~~~l~~s~~~ 297 (310)
T 1guz_A 223 -SAFYAPASSVVEMVESIVLD--RKRVLPCAVGLEGQYGI-DKTFVGVPVKLGRNGVEQIYE-INLDQADLDLLQKSAKI 297 (310)
T ss_dssp -CCCHHHHHHHHHHHHHHHTT--CCEEEEEEEEEESGGGC-EEEEEEEEEEEETTEEEEECC-CCCCHHHHHHHHHHHHH
T ss_pred -CcHHHHHHHHHHHHHHHHcC--CCcEEEEEEeecCccCC-cceEEEEEEEEeCCeeEEEcC-CCCCHHHHHHHHHHHHH
Confidence 55678899999988887764 57999999999999999 899999999999 99999996 99999999999999999
Q ss_pred HHHHHHHHhh
Q 019990 320 LAEEKTLAYS 329 (332)
Q Consensus 320 i~~~~~~~~~ 329 (332)
|++.++.+..
T Consensus 298 l~~~~~~~~~ 307 (310)
T 1guz_A 298 VDENCKMLES 307 (310)
T ss_dssp HHHHHHTC--
T ss_pred HHHHHHHHhh
Confidence 9999886543
|
| >1smk_A Malate dehydrogenase, glyoxysomal; tricarboxylic cycle, glyoxysome, NAD, glyoxylate bypass, oxidoreductase; HET: CIT; 2.50A {Citrullus lanatus} PDB: 1sev_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.4e-50 Score=374.19 Aligned_cols=298 Identities=22% Similarity=0.322 Sum_probs=250.5
Q ss_pred CCcEEEEEcCCChhHHHHHHHHHhcccCCCCCCeEEEEEecccchhhhhhhHhhhhhhccCCccceEE---eCCHHHHhC
Q 019990 4 NPLRVLVTGAAGQIGYALVPMIARGIMLGPDQPVILHMLDIEPAAEALNGVKMELIDAAFPLLKGVVA---TTDVVEACK 80 (332)
Q Consensus 4 ~~~kI~VtGaaG~IGs~l~~~L~~~~~~~~~~~~~i~l~D~~~~~~~~~~~~~dl~~~~~~~~~~v~~---~~~~~~a~~ 80 (332)
++|||+||||+|+||++++..|+..+.. .+|+++|++.. .+..+|+.+...+ ..+.. ++++.++++
T Consensus 7 ~~mKI~ViGAaG~VG~~la~~L~~~g~~-----~ev~l~Di~~~----~~~~~dL~~~~~~--~~v~~~~~t~d~~~al~ 75 (326)
T 1smk_A 7 PGFKVAILGAAGGIGQPLAMLMKMNPLV-----SVLHLYDVVNA----PGVTADISHMDTG--AVVRGFLGQQQLEAALT 75 (326)
T ss_dssp -CEEEEEETTTSTTHHHHHHHHHHCTTE-----EEEEEEESSSH----HHHHHHHHTSCSS--CEEEEEESHHHHHHHHT
T ss_pred CCCEEEEECCCChHHHHHHHHHHhCCCC-----CEEEEEeCCCc----HhHHHHhhccccc--ceEEEEeCCCCHHHHcC
Confidence 5789999999999999999999887642 38999998642 5677888775432 13333 346778899
Q ss_pred CCcEEEEecCCCCCCCCChhHHHhhhHHHHHHHHHHHHhhcCCCcEEEEEeCChhh----HHHHHHHHCCCCCCCcEEEe
Q 019990 81 DVNIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEKHAAPNCKVLVVANPANT----NALILKEFAPSIPAKNITCL 156 (332)
Q Consensus 81 ~aDiVi~~ag~~~~~~~~~~~~~~~N~~~~~~i~~~i~~~~~~~~~viv~snp~~~----~~~~~~~~~~~~~~~~i~~~ 156 (332)
++|+|||+||.+++++++|.+++..|+++++++++++++++ |+++++++|||++. +++.+++. +++|++|++|.
T Consensus 76 gaDvVi~~ag~~~~~g~~r~dl~~~N~~~~~~i~~~i~~~~-p~~~viv~SNPv~~~~~~~t~~~~~~-~~~p~~rviG~ 153 (326)
T 1smk_A 76 GMDLIIVPAGVPRKPGMTRDDLFKINAGIVKTLCEGIAKCC-PRAIVNLISNPVNSTVPIAAEVFKKA-GTYDPKRLLGV 153 (326)
T ss_dssp TCSEEEECCCCCCCSSCCCSHHHHHHHHHHHHHHHHHHHHC-TTSEEEECCSSHHHHHHHHHHHHHHH-TCCCTTSEEEC
T ss_pred CCCEEEEcCCcCCCCCCCHHHHHHHHHHHHHHHHHHHHhhC-CCeEEEEECCchHHHHHHHHHHHHHc-cCCCcccEEEE
Confidence 99999999999999999999999999999999999999998 89999999999999 45555776 78999998888
Q ss_pred ecccHHHHHHHHHHHcCCCCCCeeeeEEEecC-CCceeecccCcccccCCCCcchhhhccccccchhHHHHHHHhhHHHH
Q 019990 157 TRLDHNRAMGQISERLKVHVSDVKNVIIWGNH-SSTQYPDVNHATVTTSKGEKPVREAVADDNWLNTEFITTVQQRGAAI 235 (332)
Q Consensus 157 t~l~~~r~~~~~a~~~~v~~~~v~~~~V~G~h-g~~~v~~~s~~~v~~~~~~~p~~~~~~~~~~~~~~~~~~v~~~~~~i 235 (332)
|.||+.|+++++|+++|++|.+|+.+ |||+| |++++|+||++++ ... +.++. .+++.+++++++++|
T Consensus 154 ~~Ld~~r~~~~la~~l~v~~~~v~~~-v~G~H~G~~~~p~~s~~~v----~~~-----~~~~~--~~~~~~~v~~~g~ei 221 (326)
T 1smk_A 154 TMLDVVRANTFVAEVLGLDPRDVDVP-VVGGHAGVTILPLLSQVKP----PSS-----FTQEE--ISYLTDRIQNGGTEV 221 (326)
T ss_dssp CHHHHHHHHHHHHHHHTCCGGGCBCC-EEECSSGGGEEECGGGCBS----CCC-----CCHHH--HHHHHHHHHHHHHHH
T ss_pred eehHHHHHHHHHHHHhCcChhheEEE-EecccCCceEEEecccCee----cCc-----CCHHH--HHHHHHHHHHHHHHH
Confidence 99999999999999999999999976 69999 8899999999998 421 23333 378999999999999
Q ss_pred HHhc-CC-cchHHHHHHHHHHHHH---HHcCCCCCcEEEEEEeecCCCCCCCCeEEEEeEEEe-CCeEEEecCCCCCHHH
Q 019990 236 IKAR-KL-SSALSAASSACDHIRD---WVLGTPKGTWVSMGVYSDGSYGIPEGLIYSFPVTCE-KGEWSIVKGLKVDEFS 309 (332)
Q Consensus 236 ~~~~-g~-~~~~~~a~a~~~~i~~---~~~~~~~~~i~~~~v~~~g~yg~~~~~~~s~Pv~~~-~G~~~~~~~~~l~~~E 309 (332)
++.| |. ++++++|+++++++.+ |+.+ +++++|++ +.+|+| +.++|||+||+++ +|++++++.++|+++|
T Consensus 222 i~~k~~~gs~~~~~a~a~~~~~~ai~~~~~~--~~~v~~~~-~~~g~~--~~~~~~~vP~~ig~~Gv~~i~~~~~L~~~e 296 (326)
T 1smk_A 222 VEAKAGAGSATLSMAYAAVKFADACLRGLRG--DAGVIECA-FVSSQV--TELPFFASKVRLGRNGIEEVYSLGPLNEYE 296 (326)
T ss_dssp HHHTTTSCCCCHHHHHHHHHHHHHHHHHHHT--CSCEEEEE-EEECCS--SSSSEEEEEEEEETTEEEEECCCCCCCHHH
T ss_pred HhcccCCCCcHHHHHHHHHHHHHHHHHHhCC--CCeEEEEE-eecccc--CCceEEEEEEEEeCCeeEEEcCCCCCCHHH
Confidence 9987 32 4457888888887444 4664 46899998 688875 5789999999999 9999998548999999
Q ss_pred HHHHHHHHHHHHHHHHHHhhhh
Q 019990 310 RAKMDATAEELAEEKTLAYSCL 331 (332)
Q Consensus 310 ~~~l~~s~~~i~~~~~~~~~~~ 331 (332)
+++|++|++.|++.++.+.+|-
T Consensus 297 ~~~l~~s~~~l~~~~~~~~~~~ 318 (326)
T 1smk_A 297 RIGLEKAKKELAGSIEKGVSFI 318 (326)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999998874
|
| >2i6t_A Ubiquitin-conjugating enzyme E2-like isoform A; L-lactate dehydrogenase, oxidoreductase, ubiquitin-protein L unknown function; 2.10A {Homo sapiens} PDB: 3dl2_A | Back alignment and structure |
|---|
Probab=100.00 E-value=7.9e-51 Score=371.10 Aligned_cols=286 Identities=18% Similarity=0.254 Sum_probs=245.3
Q ss_pred CCcEEEEEcCCChhHHHHHHHHHhcccCCCCCCeEEEEEecccchhhhhhhHhhhhhhccCCccceEEeCCHHHHhCCCc
Q 019990 4 NPLRVLVTGAAGQIGYALVPMIARGIMLGPDQPVILHMLDIEPAAEALNGVKMELIDAAFPLLKGVVATTDVVEACKDVN 83 (332)
Q Consensus 4 ~~~kI~VtGaaG~IGs~l~~~L~~~~~~~~~~~~~i~l~D~~~~~~~~~~~~~dl~~~~~~~~~~v~~~~~~~~a~~~aD 83 (332)
+++||+|+| +|.+|+.++..|+..++++ +|+|+|+++ + +.+..+|+.+... .++..+.+. +++++||
T Consensus 13 ~~~kV~ViG-aG~vG~~~a~~l~~~g~~~-----ev~L~Di~~--~-~~g~a~dl~~~~~---~~i~~t~d~-~~l~~aD 79 (303)
T 2i6t_A 13 TVNKITVVG-GGELGIACTLAISAKGIAD-----RLVLLDLSE--G-TKGATMDLEIFNL---PNVEISKDL-SASAHSK 79 (303)
T ss_dssp -CCEEEEEC-CSHHHHHHHHHHHHHTCCS-----EEEEECCC--------CHHHHHHHTC---TTEEEESCG-GGGTTCS
T ss_pred CCCEEEEEC-CCHHHHHHHHHHHhcCCCC-----EEEEEcCCc--c-hHHHHHHHhhhcC---CCeEEeCCH-HHHCCCC
Confidence 468999999 5999999999999888754 999999964 3 5677888887432 256666775 8899999
Q ss_pred EEEEecCCCCCCCCChhHHHhhhHHHHHHHHHHHHhhcCCCcEEEEEeCChhhHHHHHHHHCCCCCCCcEEEe-ecccHH
Q 019990 84 IAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEKHAAPNCKVLVVANPANTNALILKEFAPSIPAKNITCL-TRLDHN 162 (332)
Q Consensus 84 iVi~~ag~~~~~~~~~~~~~~~N~~~~~~i~~~i~~~~~~~~~viv~snp~~~~~~~~~~~~~~~~~~~i~~~-t~l~~~ 162 (332)
+||.++|.+ ++|++|.+++..|+++++++++.+.+++ |+++++++|||++.+++++++. +++|++|++|. |.||+.
T Consensus 80 ~Vi~aag~~-~pG~tR~dl~~~n~~i~~~i~~~i~~~~-p~a~iiv~sNP~~~~t~~~~~~-~~~p~~rviG~gt~Ld~~ 156 (303)
T 2i6t_A 80 VVIFTVNSL-GSSQSYLDVVQSNVDMFRALVPALGHYS-QHSVLLVASQPVEIMTYVTWKL-STFPANRVIGIGCNLDSQ 156 (303)
T ss_dssp EEEECCCC-----CCHHHHHHHHHHHHHHHHHHHHHHT-TTCEEEECSSSHHHHHHHHHHH-HCCCGGGEEECTTHHHHH
T ss_pred EEEEcCCCC-CCCCCHHHHHHHHHHHHHHHHHHHHHhC-CCeEEEEcCChHHHHHHHHHHh-cCCCHHHeeCCCCCchHH
Confidence 999999996 7899999999999999999999999998 9999999999999999999998 89999998777 999999
Q ss_pred HHHHHHHHHcCCCCCCeeeeEEEecCCCceeecccCcccccCCCCcchhhhccccccchhHHHHHHHhhHHHHHHhcCCc
Q 019990 163 RAMGQISERLKVHVSDVKNVIIWGNHSSTQYPDVNHATVTTSKGEKPVREAVADDNWLNTEFITTVQQRGAAIIKARKLS 242 (332)
Q Consensus 163 r~~~~~a~~~~v~~~~v~~~~V~G~hg~~~v~~~s~~~v~~~~~~~p~~~~~~~~~~~~~~~~~~v~~~~~~i~~~~g~~ 242 (332)
|+++++|+++|+++.+|+.+ |||+||++++|+||+.. + |..+++.+++++++++|++.|| +
T Consensus 157 R~~~~la~~lgv~~~~v~~~-v~G~Hg~s~~p~~s~~~--------~---------~~~~~~~~~~~~~g~eii~~kG-s 217 (303)
T 2i6t_A 157 RLQYIITNVLKAQTSGKEVW-VIGEQGEDKVLTWSGQE--------E---------VVSHTSQVQLSNRAMELLRVKG-Q 217 (303)
T ss_dssp HHHHHHHHTSCCTTGGGGEE-EEBSCSSSCEEEEBCSS--------C---------CCCHHHHHHHHHHHHTTSSSCC-C
T ss_pred HHHHHHHHHcCCChHHeEEE-EecCCCCCccccccccc--------c---------ccHHHHHHHHHHHHHHHHHccC-c
Confidence 99999999999999999986 69999999999999841 0 2346788889999999999988 5
Q ss_pred chHHHHHHHHHHHHHHHcCCCCCcEEEEEEeecCCCCCCCCeEEEEeEEEe-CCeEEEecCC-CCCHHHHHHHHHHHHHH
Q 019990 243 SALSAASSACDHIRDWVLGTPKGTWVSMGVYSDGSYGIPEGLIYSFPVTCE-KGEWSIVKGL-KVDEFSRAKMDATAEEL 320 (332)
Q Consensus 243 ~~~~~a~a~~~~i~~~~~~~~~~~i~~~~v~~~g~yg~~~~~~~s~Pv~~~-~G~~~~~~~~-~l~~~E~~~l~~s~~~i 320 (332)
+++++|+++++++.+++.+ +++++|++++.+|+||+|+++|||+||+++ +|++++++ + +|+++|+++|++|++.|
T Consensus 218 t~~~~a~a~~~i~~ai~~~--~~~~~~vs~~~~g~yg~~~~~~~~vP~~ig~~Gv~~i~~-~~~l~~~e~~~l~~s~~~l 294 (303)
T 2i6t_A 218 RSWSVGLSVADMVDSIVNN--KKKVHSVSALAKGYYDINSEVFLSLPCILGTNGVSEVIK-TTLKEDTVTEKLQSSASSI 294 (303)
T ss_dssp CHHHHHHHHHHHHHHHHTT--CCEEEEEEEECTTSTTCCSCCEEEEEEEEETTEEEEECC-BCC-CCHHHHHHHHHHHHH
T ss_pred hHHhHHHHHHHHHHHHHcC--CCcEEEEEEEeCCccCCCCCeEEEEEEEEECCccEEecC-CCCCCHHHHHHHHHHHHHH
Confidence 5778899999988887764 478999999999999998899999999999 99999986 6 89999999999999999
Q ss_pred HHHHHHH
Q 019990 321 AEEKTLA 327 (332)
Q Consensus 321 ~~~~~~~ 327 (332)
++.++..
T Consensus 295 ~~~~~~~ 301 (303)
T 2i6t_A 295 HSLQQQL 301 (303)
T ss_dssp HHHHHHC
T ss_pred HHHHHHh
Confidence 9998753
|
| >2v6b_A L-LDH, L-lactate dehydrogenase; oxidoreductase, radioresistance, NAD, cytoplasm, mesophilic, glycolysis; 2.50A {Deinococcus radiodurans} | Back alignment and structure |
|---|
Probab=100.00 E-value=4.7e-51 Score=374.12 Aligned_cols=295 Identities=18% Similarity=0.288 Sum_probs=230.2
Q ss_pred cEEEEEcCCChhHHHHHHHHHhcccCCCCCCeEEEEEecccchhhhhhhHhhhhhhccCCccceEEeCCHHHHhCCCcEE
Q 019990 6 LRVLVTGAAGQIGYALVPMIARGIMLGPDQPVILHMLDIEPAAEALNGVKMELIDAAFPLLKGVVATTDVVEACKDVNIA 85 (332)
Q Consensus 6 ~kI~VtGaaG~IGs~l~~~L~~~~~~~~~~~~~i~l~D~~~~~~~~~~~~~dl~~~~~~~~~~v~~~~~~~~a~~~aDiV 85 (332)
|||+|+|| |.+|++++..|+..++.+ +|+|+|++. +++++..+|+.+.. +...+.....+.++++++||+|
T Consensus 1 mkI~VIGa-G~vG~~la~~la~~g~~~-----eV~L~D~~~--~~~~~~~~~l~~~~-~~~~~~~i~~~~~~a~~~aDvV 71 (304)
T 2v6b_A 1 MKVGVVGT-GFVGSTAAFALVLRGSCS-----ELVLVDRDE--DRAQAEAEDIAHAA-PVSHGTRVWHGGHSELADAQVV 71 (304)
T ss_dssp CEEEEECC-SHHHHHHHHHHHHTTCCS-----EEEEECSSH--HHHHHHHHHHTTSC-CTTSCCEEEEECGGGGTTCSEE
T ss_pred CEEEEECC-CHHHHHHHHHHHhCCCCC-----EEEEEeCCH--HHHHHHHHhhhhhh-hhcCCeEEEECCHHHhCCCCEE
Confidence 58999995 999999999999888654 899999964 56777788887754 2222332221235789999999
Q ss_pred EEecCCCCCCCCChhHHHhhhHHHHHHHHHHHHhhcCCCcEEEEEeCChhhHHHHHHHHCCCCCCCcEEEe-ecccHHHH
Q 019990 86 VMVGGFPRKEGMERKDVMSKNVSIYKAQASALEKHAAPNCKVLVVANPANTNALILKEFAPSIPAKNITCL-TRLDHNRA 164 (332)
Q Consensus 86 i~~ag~~~~~~~~~~~~~~~N~~~~~~i~~~i~~~~~~~~~viv~snp~~~~~~~~~~~~~~~~~~~i~~~-t~l~~~r~ 164 (332)
|++++.++++|++|.+++..|+++++++++.+++++ |+++++++|||++.+++++++. + |++|++|. |.+|+.|+
T Consensus 72 Ii~~~~~~~~g~~r~dl~~~n~~i~~~i~~~i~~~~-p~~~vi~~tNP~~~~~~~~~~~-~--~~~rviG~gt~Ld~~r~ 147 (304)
T 2v6b_A 72 ILTAGANQKPGESRLDLLEKNADIFRELVPQITRAA-PDAVLLVTSNPVDLLTDLATQL-A--PGQPVIGSGTVLDSARF 147 (304)
T ss_dssp EECC------------CHHHHHHHHHHHHHHHHHHC-SSSEEEECSSSHHHHHHHHHHH-S--CSSCEEECTTHHHHHHH
T ss_pred EEcCCCCCCCCCcHHHHHHhHHHHHHHHHHHHHHhC-CCeEEEEecCchHHHHHHHHHh-C--ChhcEEeCCcCchHHHH
Confidence 999999999999999999999999999999999997 8999999999999999999987 3 78887555 99999999
Q ss_pred HHHHHHHcCCCCCCeeeeEEEecCCCceeecccCcccccCCCCcchhhhccccc--c---chhHHHHHHHhhHHHHHHhc
Q 019990 165 MGQISERLKVHVSDVKNVIIWGNHSSTQYPDVNHATVTTSKGEKPVREAVADDN--W---LNTEFITTVQQRGAAIIKAR 239 (332)
Q Consensus 165 ~~~~a~~~~v~~~~v~~~~V~G~hg~~~v~~~s~~~v~~~~~~~p~~~~~~~~~--~---~~~~~~~~v~~~~~~i~~~~ 239 (332)
++++|+++|+++.+|+.+ |||+||++++|+||++++ +|+|+.+++.+.. | ..+++.+++++++++|++.|
T Consensus 148 ~~~la~~l~v~~~~v~~~-v~G~Hg~~~~p~~s~~~v----~g~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~eii~~k 222 (304)
T 2v6b_A 148 RHLMAQHAGVDGTHAHGY-VLGEHGDSEVLAWSSAMV----AGMPVADFMQAQNLPWNEQVRAKIDEGTRNAAASIIEGK 222 (304)
T ss_dssp HHHHHHHHTSCGGGEECC-EEESSSTTEEECGGGCEE----TTEEHHHHHHHHTCCCSHHHHHHHHHHHTC---------
T ss_pred HHHHHHHhCcCHHHceEE-EecCCCCceeeehhHccC----CCEEHHHHhhhcccCCCHHHHHHHHHHHHHHHHHHHhcc
Confidence 999999999999999985 699999999999999999 9999999865432 4 35789999999999999999
Q ss_pred CCcchHHHHHHHHHHHHHHHcCCCCCcEEEEEEeecCCCCCCCCeEEEEeEEEe-CCeEEEecCCCCCHHHHHHHHHHHH
Q 019990 240 KLSSALSAASSACDHIRDWVLGTPKGTWVSMGVYSDGSYGIPEGLIYSFPVTCE-KGEWSIVKGLKVDEFSRAKMDATAE 318 (332)
Q Consensus 240 g~~~~~~~a~a~~~~i~~~~~~~~~~~i~~~~v~~~g~yg~~~~~~~s~Pv~~~-~G~~~~~~~~~l~~~E~~~l~~s~~ 318 (332)
|.++ +++|.++++++.+++.+ +++++|++++++| || +|||+||++| +|++++++ ++|+++|+++|++|++
T Consensus 223 g~t~-~~~a~a~~~~~~ai~~~--~~~~~~~~~~~~g-yg----~~~~~P~~ig~~Gv~~i~~-~~l~~~e~~~l~~s~~ 293 (304)
T 2v6b_A 223 RATY-YGIGAALARITEAVLRD--RRAVLTVSAPTPE-YG----VSLSLPRVVGRQGVLSTLH-PKLTGDEQQKLEQSAG 293 (304)
T ss_dssp --CC-HHHHHHHHHHHHHHHTT--CCEEEEEEEEETT-TT----EEEEEEEEEETTEEEEECC-CCCCHHHHHHHHHHHH
T ss_pred CCcH-HHHHHHHHHHHHHHHhC--CCcEEEEEEEECC-cC----cEEEEEEEEeCCeeEEEcC-CCCCHHHHHHHHHHHH
Confidence 9665 45689999988887774 5899999999999 86 8999999999 99999996 9999999999999999
Q ss_pred HHHHHHHHH
Q 019990 319 ELAEEKTLA 327 (332)
Q Consensus 319 ~i~~~~~~~ 327 (332)
.|++.++..
T Consensus 294 ~l~~~~~~~ 302 (304)
T 2v6b_A 294 VLRGFKQQL 302 (304)
T ss_dssp HHHC-----
T ss_pred HHHHHHHHh
Confidence 999988764
|
| >1a5z_A L-lactate dehydrogenase; oxidoreductase, glycolysis, hyperthermophiles, thermotoga MA protein stability; HET: FBP NAD; 2.10A {Thermotoga maritima} SCOP: c.2.1.5 d.162.1.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=9.2e-48 Score=354.67 Aligned_cols=301 Identities=19% Similarity=0.291 Sum_probs=258.2
Q ss_pred cEEEEEcCCChhHHHHHHHHHhcccCCCCCCeEEEEEecccchhhhhhhHhhhhhhccCC-ccceEEeCCHHHHhCCCcE
Q 019990 6 LRVLVTGAAGQIGYALVPMIARGIMLGPDQPVILHMLDIEPAAEALNGVKMELIDAAFPL-LKGVVATTDVVEACKDVNI 84 (332)
Q Consensus 6 ~kI~VtGaaG~IGs~l~~~L~~~~~~~~~~~~~i~l~D~~~~~~~~~~~~~dl~~~~~~~-~~~v~~~~~~~~a~~~aDi 84 (332)
|||+|+| +|.+|++++..|+..++.+ +|+++|++. +++.+...++.+..... ...+.. ++ .+++++||+
T Consensus 1 mkI~VIG-aG~~G~~la~~l~~~g~~~-----~V~l~D~~~--~~~~~~~~~l~~~~~~~~~~~i~~-~d-~~~~~~aDv 70 (319)
T 1a5z_A 1 MKIGIVG-LGRVGSSTAFALLMKGFAR-----EMVLIDVDK--KRAEGDALDLIHGTPFTRRANIYA-GD-YADLKGSDV 70 (319)
T ss_dssp CEEEEEC-CSHHHHHHHHHHHHHTCCS-----EEEEECSSH--HHHHHHHHHHHHHGGGSCCCEEEE-CC-GGGGTTCSE
T ss_pred CEEEEEC-CCHHHHHHHHHHHhCCCCC-----eEEEEeCCh--HHHHHHHHHHHhhhhhcCCcEEEe-CC-HHHhCCCCE
Confidence 5899999 5999999999998877643 899999864 45666666665543111 123333 34 577999999
Q ss_pred EEEecCCCCCCCCChhHHHhhhHHHHHHHHHHHHhhcCCCcEEEEEeCChhhHHHHHHHHCCCCCCCcEEE-eecccHHH
Q 019990 85 AVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEKHAAPNCKVLVVANPANTNALILKEFAPSIPAKNITC-LTRLDHNR 163 (332)
Q Consensus 85 Vi~~ag~~~~~~~~~~~~~~~N~~~~~~i~~~i~~~~~~~~~viv~snp~~~~~~~~~~~~~~~~~~~i~~-~t~l~~~r 163 (332)
||++++.+++++++|.+++..|+++++++++.+++++ |+++++++|||++.+++++++. +++|+++++| +|.+|+.|
T Consensus 71 Viiav~~~~~~g~~r~dl~~~n~~i~~~i~~~i~~~~-~~~~ii~~tNp~~~~~~~~~~~-~~~~~~rviG~~t~ld~~r 148 (319)
T 1a5z_A 71 VIVAAGVPQKPGETRLQLLGRNARVMKEIARNVSKYA-PDSIVIVVTNPVDVLTYFFLKE-SGMDPRKVFGSGTVLDTAR 148 (319)
T ss_dssp EEECCCCCCCSSCCHHHHHHHHHHHHHHHHHHHHHHC-TTCEEEECSSSHHHHHHHHHHH-HTCCTTTEEECTTHHHHHH
T ss_pred EEEccCCCCCCCCCHHHHHHHHHHHHHHHHHHHHhhC-CCeEEEEeCCcHHHHHHHHHHH-hCCChhhEEeeCccHHHHH
Confidence 9999999988889999999999999999999999997 8999999999999999998887 5789999654 58999999
Q ss_pred HHHHHHHHcCCCCCCeeeeEEEecCCCceeecccCcccccCCCCcchhhhccccc-c---chhHHHHHHHhhHHHHHHhc
Q 019990 164 AMGQISERLKVHVSDVKNVIIWGNHSSTQYPDVNHATVTTSKGEKPVREAVADDN-W---LNTEFITTVQQRGAAIIKAR 239 (332)
Q Consensus 164 ~~~~~a~~~~v~~~~v~~~~V~G~hg~~~v~~~s~~~v~~~~~~~p~~~~~~~~~-~---~~~~~~~~v~~~~~~i~~~~ 239 (332)
+++++|+++|+++.+++.+ |||+||++++|+||++++ +|+|+.+++.... | ..+++.++++++++++++.|
T Consensus 149 ~~~~la~~lgv~~~~v~~~-v~G~hg~~~~p~~s~~~v----~G~~~~~~~~~~~~~~~~~~~~~~~~v~~~g~eii~~k 223 (319)
T 1a5z_A 149 LRTLIAQHCGFSPRSVHVY-VIGEHGDSEVPVWSGAMI----GGIPLQNMCQVCQKCDSKILENFAEKTKRAAYEIIERK 223 (319)
T ss_dssp HHHHHHHHHTCCGGGEECC-EEBCSSTTCEECGGGCEE----TTEEHHHHHTTSSSCCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCcCHHHceEE-EEeCCCCCcccchhhceE----CCEEHHHHhhcccccCHHHHHHHHHHHHHhhhhhhccC
Confidence 9999999999999999986 599999999999999999 9999999865432 3 34678999999999999999
Q ss_pred CCcchHHHHHHHHHHHHHHHcCCCCCcEEEEEEeecCCCCCCCCeEEEEeEEEe-CCeEEEecCCCCCHHHHHHHHHHHH
Q 019990 240 KLSSALSAASSACDHIRDWVLGTPKGTWVSMGVYSDGSYGIPEGLIYSFPVTCE-KGEWSIVKGLKVDEFSRAKMDATAE 318 (332)
Q Consensus 240 g~~~~~~~a~a~~~~i~~~~~~~~~~~i~~~~v~~~g~yg~~~~~~~s~Pv~~~-~G~~~~~~~~~l~~~E~~~l~~s~~ 318 (332)
|.+++ ++|.++++++.+++.+ +++++|++++.+|+||+ +++|||+||+++ +|++++++ ++|+++|+++|++|++
T Consensus 224 g~~~~-~~a~a~~~~~~ai~~~--~~~~~~~~~~~~g~~g~-~~~~~~vP~~vg~~Gv~~i~~-~~L~~~e~~~l~~s~~ 298 (319)
T 1a5z_A 224 GATHY-AIALAVADIVESIFFD--EKRVLTLSVYLEDYLGV-KDLCISVPVTLGKHGVERILE-LNLNEEELEAFRKSAS 298 (319)
T ss_dssp SCCCH-HHHHHHHHHHHHHHTT--CCEEEEEEEEESSBTTB-CSEEEEEEEEEETTEEEEECC-CCCCHHHHHHHHHHHH
T ss_pred CchHH-HHHHHHHHHHHHHHhC--CCCEEEEEEEecCccCc-cceEEEEEEEEeCCceEEEec-CCCCHHHHHHHHHHHH
Confidence 97654 5689999988887764 57899999999999999 899999999999 99999996 9999999999999999
Q ss_pred HHHHHHHHHh
Q 019990 319 ELAEEKTLAY 328 (332)
Q Consensus 319 ~i~~~~~~~~ 328 (332)
.|++.++.+.
T Consensus 299 ~l~~~~~~~~ 308 (319)
T 1a5z_A 299 ILKNAINEIT 308 (319)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHhc
Confidence 9999998763
|
| >2ewd_A Lactate dehydrogenase,; protein-substrate_cofactor analog complex, oxidoreductase; HET: A3D; 2.00A {Cryptosporidium parvum} PDB: 2frm_A 2fn7_A* 2fnz_A* 2fm3_A | Back alignment and structure |
|---|
Probab=100.00 E-value=2.2e-45 Score=338.77 Aligned_cols=306 Identities=17% Similarity=0.306 Sum_probs=259.4
Q ss_pred CCCCcEEEEEcCCChhHHHHHHHHHhcccCCCCCCeEEEEEecccchhhhhhhHhhhhhhcc--CCccceEEeCCHHHHh
Q 019990 2 AKNPLRVLVTGAAGQIGYALVPMIARGIMLGPDQPVILHMLDIEPAAEALNGVKMELIDAAF--PLLKGVVATTDVVEAC 79 (332)
Q Consensus 2 ~~~~~kI~VtGaaG~IGs~l~~~L~~~~~~~~~~~~~i~l~D~~~~~~~~~~~~~dl~~~~~--~~~~~v~~~~~~~~a~ 79 (332)
+++++||+|+| +|.+|+.++..|+..++. +|+++|++. +++++..+|+.+... .....+..+++. +++
T Consensus 1 M~~~~kI~VIG-aG~~G~~ia~~la~~g~~------~V~l~D~~~--~~~~~~~~~l~~~~~~~~~~~~i~~t~d~-~a~ 70 (317)
T 2ewd_A 1 MIERRKIAVIG-SGQIGGNIAYIVGKDNLA------DVVLFDIAE--GIPQGKALDITHSMVMFGSTSKVIGTDDY-ADI 70 (317)
T ss_dssp CCCCCEEEEEC-CSHHHHHHHHHHHHHTCC------EEEEECSSS--SHHHHHHHHHHHHHHHHTCCCCEEEESCG-GGG
T ss_pred CCCCCEEEEEC-CCHHHHHHHHHHHhCCCc------eEEEEeCCc--hHHHHHHHHHHhhhhhcCCCcEEEECCCH-HHh
Confidence 04567999999 599999999999987752 799999964 456665666655421 112356665676 789
Q ss_pred CCCcEEEEecCCCCCCCCChhHHHhhhHHHHHHHHHHHHhhcCCCcEEEEEeCChhhHHHHHHHHCCCCCCCcEEEe-ec
Q 019990 80 KDVNIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEKHAAPNCKVLVVANPANTNALILKEFAPSIPAKNITCL-TR 158 (332)
Q Consensus 80 ~~aDiVi~~ag~~~~~~~~~~~~~~~N~~~~~~i~~~i~~~~~~~~~viv~snp~~~~~~~~~~~~~~~~~~~i~~~-t~ 158 (332)
++||+||.++|.|++++++|.+++..|.+.++++++.+.+++ |+++++++|||++.+++.+++. +++||+|++|. |.
T Consensus 71 ~~aDiVi~avg~p~~~g~~r~d~~~~~~~i~~~i~~~i~~~~-~~~iii~~sNp~~~~~~~~~~~-~~~~~~rviG~~t~ 148 (317)
T 2ewd_A 71 SGSDVVIITASIPGRPKDDRSELLFGNARILDSVAEGVKKYC-PNAFVICITNPLDVMVSHFQKV-SGLPHNKVCGMAGV 148 (317)
T ss_dssp TTCSEEEECCCCSSCCSSCGGGGHHHHHHHHHHHHHHHHHHC-TTSEEEECCSSHHHHHHHHHHH-HCCCGGGEEESCHH
T ss_pred CCCCEEEEeCCCCCCCCCcHHHHHHhhHHHHHHHHHHHHHHC-CCcEEEEeCChHHHHHHHHHHh-hCCCHHHEEeccCc
Confidence 999999999999999999999999999999999999999997 7999999999999999988886 67889997666 79
Q ss_pred ccHHHHHHHHHHHcCCCCCCeeeeEEEecCCCceeecccCcccccCCCCcchhhhcccccc---chhHHHHHHHhhHHHH
Q 019990 159 LDHNRAMGQISERLKVHVSDVKNVIIWGNHSSTQYPDVNHATVTTSKGEKPVREAVADDNW---LNTEFITTVQQRGAAI 235 (332)
Q Consensus 159 l~~~r~~~~~a~~~~v~~~~v~~~~V~G~hg~~~v~~~s~~~v~~~~~~~p~~~~~~~~~~---~~~~~~~~v~~~~~~i 235 (332)
+|+.|++..+++++|+++.++.++ |+|+||++++|+||.+++ +|+|+.+++.+.-+ +.+++.+.++.+++++
T Consensus 149 ld~~r~~~~la~~lg~~~~~v~~~-v~g~Hg~~~~~~~~~a~v----~g~~~~~~~~~g~~~~~~id~~~~~~~~~~~ei 223 (317)
T 2ewd_A 149 LDSSRFRTFIAQHFGVNASDVSAN-VIGGHGDGMVPATSSVSV----GGVPLSSFIKQGLITQEQIDEIVCHTRIAWKEV 223 (317)
T ss_dssp HHHHHHHHHHHHHHTSCGGGEECC-EEBCSSTTCEECGGGCEE----TTEEHHHHHHTTSSCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCcChhhceEE-EEecCCCceeEEeecccc----CCEEHHHHHhccCCCHHHHHHHHHHHHhhHHHH
Confidence 999999999999999999999998 589999999999999999 99999988654211 2456777778899999
Q ss_pred HHhcCC-cchHHHHHHHHHHHHHHHcCCCCCcEEEEEEeecCCCCCCCCeEEEEeEEEe-CCeEEEecCCCCCHHHHHHH
Q 019990 236 IKARKL-SSALSAASSACDHIRDWVLGTPKGTWVSMGVYSDGSYGIPEGLIYSFPVTCE-KGEWSIVKGLKVDEFSRAKM 313 (332)
Q Consensus 236 ~~~~g~-~~~~~~a~a~~~~i~~~~~~~~~~~i~~~~v~~~g~yg~~~~~~~s~Pv~~~-~G~~~~~~~~~l~~~E~~~l 313 (332)
++..|. +.++++|.++++++.+++. ++++++|++++.+|+||+ +++|||+||+++ +|++++++ ++|+++|+++|
T Consensus 224 ~~~~g~g~~~~~~a~a~~~~~~ai~~--~~~~~~~~~~~~~G~~g~-~~~~~~~P~~i~~~Gv~~i~~-~~l~~~e~~~l 299 (317)
T 2ewd_A 224 ADNLKTGTAYFAPAAAAVKMAEAYLK--DKKAVVPCSAFCSNHYGV-KGIYMGVPTIIGKNGVEDILE-LDLTPLEQKLL 299 (317)
T ss_dssp HHHHSSSCCCHHHHHHHHHHHHHHHT--TCCEEEEEEEEESSSTTC-SSEEEEEEEEEETTEEEEECC-CCCCHHHHHHH
T ss_pred HHhhcCCchHHHHHHHHHHHHHHHHc--CCCeEEEEEEEecCccCC-cceEEEeEEEEcCCeeEEecC-CCCCHHHHHHH
Confidence 995333 4456788999988887765 357899999999999999 899999999999 99999996 99999999999
Q ss_pred HHHHHHHHHHHHHHh
Q 019990 314 DATAEELAEEKTLAY 328 (332)
Q Consensus 314 ~~s~~~i~~~~~~~~ 328 (332)
++|++.|++.++...
T Consensus 300 ~~s~~~l~~~~~~~~ 314 (317)
T 2ewd_A 300 GESINEVNTISKVLD 314 (317)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhh
Confidence 999999999998764
|
| >1hyh_A L-hicdh, L-2-hydroxyisocaproate dehydrogenase; L-2-hydroxycarboxylate dehydrogenase, L-lactate dehydrogenas oxidoreductase (CHOH(D)-NAD+(A)); HET: NAD; 2.20A {Weissella confusa} SCOP: c.2.1.5 d.162.1.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=2.7e-45 Score=337.06 Aligned_cols=300 Identities=15% Similarity=0.197 Sum_probs=251.4
Q ss_pred CcEEEEEcCCChhHHHHHHHHHhcccCCCCCCeEEEEEecccchhhhhhhHhhhhhhccCCccceEE-eCCHHHHhCCCc
Q 019990 5 PLRVLVTGAAGQIGYALVPMIARGIMLGPDQPVILHMLDIEPAAEALNGVKMELIDAAFPLLKGVVA-TTDVVEACKDVN 83 (332)
Q Consensus 5 ~~kI~VtGaaG~IGs~l~~~L~~~~~~~~~~~~~i~l~D~~~~~~~~~~~~~dl~~~~~~~~~~v~~-~~~~~~a~~~aD 83 (332)
||||+|+| +|.+|++++..|+..++. .+|+++|++. +++++...++.+.......++.. ..+. +++++||
T Consensus 1 m~kI~VIG-aG~~G~~la~~L~~~g~~-----~~V~l~d~~~--~~~~~~~~~l~~~~~~~~~~~~~~~~d~-~~~~~aD 71 (309)
T 1hyh_A 1 ARKIGIIG-LGNVGAAVAHGLIAQGVA-----DDYVFIDANE--AKVKADQIDFQDAMANLEAHGNIVINDW-AALADAD 71 (309)
T ss_dssp CCEEEEEC-CSHHHHHHHHHHHHHTCC-----SEEEEECSSH--HHHHHHHHHHHHHGGGSSSCCEEEESCG-GGGTTCS
T ss_pred CCEEEEEC-CCHHHHHHHHHHHhCCCC-----CEEEEEcCCH--HHHHHHHHHHHhhhhhcCCCeEEEeCCH-HHhCCCC
Confidence 36999999 799999999999887742 2899999864 45666666666543222223333 3565 7899999
Q ss_pred EEEEecCCCCC----CCCChhHHHhhhHHHHHHHHHHHHhhcCCCcEEEEEeCChhhHHHHHHHHCCCCCCCcEEEe-ec
Q 019990 84 IAVMVGGFPRK----EGMERKDVMSKNVSIYKAQASALEKHAAPNCKVLVVANPANTNALILKEFAPSIPAKNITCL-TR 158 (332)
Q Consensus 84 iVi~~ag~~~~----~~~~~~~~~~~N~~~~~~i~~~i~~~~~~~~~viv~snp~~~~~~~~~~~~~~~~~~~i~~~-t~ 158 (332)
+||++++.+++ ++++|.+++..|+++++++++.+++++ |+++++++|||++.+++++++. +++|+.+++|. |.
T Consensus 72 vViiav~~~~~~~~~~g~~r~~l~~~n~~i~~~i~~~i~~~~-~~~~ii~~tNp~~~~~~~~~~~-~~~~~~rvig~gt~ 149 (309)
T 1hyh_A 72 VVISTLGNIKLQQDNPTGDRFAELKFTSSMVQSVGTNLKESG-FHGVLVVISNPVDVITALFQHV-TGFPAHKVIGTGTL 149 (309)
T ss_dssp EEEECCSCGGGTC-------CTTHHHHHHHHHHHHHHHHHTT-CCSEEEECSSSHHHHHHHHHHH-HCCCGGGEEECTTH
T ss_pred EEEEecCCcccCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHC-CCcEEEEEcCcHHHHHHHHHHh-cCCCHHHEeecCcc
Confidence 99999998887 889999999999999999999999997 7889899999999999999887 68999998777 99
Q ss_pred ccHHHHHHHHHHHcCCCCCCeeeeEEEecCCCceeecccCcccccCCCCcchhhh--ccccccchhHHHHHHHhhHHHHH
Q 019990 159 LDHNRAMGQISERLKVHVSDVKNVIIWGNHSSTQYPDVNHATVTTSKGEKPVREA--VADDNWLNTEFITTVQQRGAAII 236 (332)
Q Consensus 159 l~~~r~~~~~a~~~~v~~~~v~~~~V~G~hg~~~v~~~s~~~v~~~~~~~p~~~~--~~~~~~~~~~~~~~v~~~~~~i~ 236 (332)
+|+.|++..+++.+++++.+++.+ ++|+||++++|+||++.+ +|+|+.++ +.++.| +++.+++++++++++
T Consensus 150 ld~~r~~~~~a~~l~~~~~~v~~~-v~G~hg~~~~~~~s~~~v----~g~~~~~~~~~~~~~~--~~~~~~v~~~g~~ii 222 (309)
T 1hyh_A 150 LDTARMQRAVGEAFDLDPRSVSGY-NLGEHGNSQFVAWSTVRV----MGQPIVTLADAGDIDL--AAIEEEARKGGFTVL 222 (309)
T ss_dssp HHHHHHHHHHHHHHTCCGGGCBCC-EEBCTTTTCEECTTTCEE----TTEEGGGC-----CCH--HHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHhCCChhheEEE-EEeCCCCcEeeccccceE----CCEEHHHhccCCHHHH--HHHHHHHHHhHHHHH
Confidence 999999999999999999999986 589999999999999999 99999988 444545 789999999999999
Q ss_pred HhcCCcchHHHHHHHHHHHHHHHcCCCCCcEEEEEEeecCCCCCCCCeEEEEeEEEe-CCeEEEecCCCCCHHHHHHHHH
Q 019990 237 KARKLSSALSAASSACDHIRDWVLGTPKGTWVSMGVYSDGSYGIPEGLIYSFPVTCE-KGEWSIVKGLKVDEFSRAKMDA 315 (332)
Q Consensus 237 ~~~g~~~~~~~a~a~~~~i~~~~~~~~~~~i~~~~v~~~g~yg~~~~~~~s~Pv~~~-~G~~~~~~~~~l~~~E~~~l~~ 315 (332)
+.||.+. +++|.++++++.+++.+ ++.++|++++++| .++|+|+||+++ +|++++++ ++|+++|+++|++
T Consensus 223 ~~kg~~~-~~~a~a~~~~~~ai~~~--~~~~~~~~~~~~g-----~~~~~~vP~~i~~~Gv~~i~~-~~l~~~e~~~l~~ 293 (309)
T 1hyh_A 223 NGKGYTS-YGVATSAIRIAKAVMAD--AHAELVVSNRRDD-----MGMYLSYPAIIGRDGVLAETT-LDLTTDEQEKLLQ 293 (309)
T ss_dssp HHHSSCC-HHHHHHHHHHHHHHHTT--CCEEEEEEEECTT-----TCSEEEEEEEEETTEEEEECC-CCCCHHHHHHHHH
T ss_pred hccCCch-HHHHHHHHHHHHHHHcC--CCcEEEEEEEECC-----CCeEEEEEEEEeCCceEEEeC-CCCCHHHHHHHHH
Confidence 9999654 57789999888887664 4789999999988 578999999999 99999986 8999999999999
Q ss_pred HHHHHHHHHHHHhhhh
Q 019990 316 TAEELAEEKTLAYSCL 331 (332)
Q Consensus 316 s~~~i~~~~~~~~~~~ 331 (332)
|++.|++.++.+.+-|
T Consensus 294 s~~~l~~~~~~~~~~~ 309 (309)
T 1hyh_A 294 SRDYIQQRFDEIVDTL 309 (309)
T ss_dssp HHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHhhhC
Confidence 9999999999887643
|
| >1lld_A L-lactate dehydrogenase; oxidoreductase(CHOH (D)-NAD (A)); HET: NAD; 2.00A {Bifidobacterium longum subsp} SCOP: c.2.1.5 d.162.1.1 PDB: 1lth_T* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.1e-38 Score=294.18 Aligned_cols=304 Identities=22% Similarity=0.306 Sum_probs=252.5
Q ss_pred CCCcEEEEEcCCChhHHHHHHHHHhcccCCCCCCeEEEEEecccchhhhhhhHhhhhhhccCC-ccceEEeCCHHHHhCC
Q 019990 3 KNPLRVLVTGAAGQIGYALVPMIARGIMLGPDQPVILHMLDIEPAAEALNGVKMELIDAAFPL-LKGVVATTDVVEACKD 81 (332)
Q Consensus 3 ~~~~kI~VtGaaG~IGs~l~~~L~~~~~~~~~~~~~i~l~D~~~~~~~~~~~~~dl~~~~~~~-~~~v~~~~~~~~a~~~ 81 (332)
+++|||+|+| +|.+|+.++..|...++.+ +|.++|++. +++.+...++.+..... ...+....+ .+++++
T Consensus 5 ~~~mkI~IiG-aG~vG~~~a~~l~~~g~~~-----~V~l~d~~~--~~~~~~~~~~~~~~~~~~~~~v~~~~~-~~~~~~ 75 (319)
T 1lld_A 5 VKPTKLAVIG-AGAVGSTLAFAAAQRGIAR-----EIVLEDIAK--ERVEAEVLDMQHGSSFYPTVSIDGSDD-PEICRD 75 (319)
T ss_dssp --CCEEEEEC-CSHHHHHHHHHHHHTTCCS-----EEEEECSSH--HHHHHHHHHHHHTGGGSTTCEEEEESC-GGGGTT
T ss_pred CCCCEEEEEC-CCHHHHHHHHHHHhCCCCC-----EEEEEeCCh--hHHHHHHHHHHhhhhhcCCeEEEeCCC-HHHhCC
Confidence 3568999999 5999999999999877643 899999863 35555556665543111 123333334 467899
Q ss_pred CcEEEEecCCCCCCCCChhHHHhhhHHHHHHHHHHHHhhcCCCcEEEEEeCChhhHHHHHHHHCCCCCCCcEE-Eeeccc
Q 019990 82 VNIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEKHAAPNCKVLVVANPANTNALILKEFAPSIPAKNIT-CLTRLD 160 (332)
Q Consensus 82 aDiVi~~ag~~~~~~~~~~~~~~~N~~~~~~i~~~i~~~~~~~~~viv~snp~~~~~~~~~~~~~~~~~~~i~-~~t~l~ 160 (332)
+|+||++++.+++++++|.+++..|++.++++++.+++++ |++++++++||++.++++.++. +++|+++++ ++|.++
T Consensus 76 aD~Vii~v~~~~~~g~~r~~~~~~n~~~~~~~~~~i~~~~-~~~~vi~~~Np~~~~~~~~~~~-~~~~~~~vig~~~~l~ 153 (319)
T 1lld_A 76 ADMVVITAGPRQKPGQSRLELVGATVNILKAIMPNLVKVA-PNAIYMLITNPVDIATHVAQKL-TGLPENQIFGSGTNLD 153 (319)
T ss_dssp CSEEEECCCCCCCTTCCHHHHHHHHHHHHHHHHHHHHHHC-TTSEEEECCSSHHHHHHHHHHH-HTCCTTSEEECTTHHH
T ss_pred CCEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhC-CCceEEEecCchHHHHHHHHHh-cCCCHHHEeeccccHh
Confidence 9999999999989999999999999999999999999986 8889999999999999888776 678888865 459999
Q ss_pred HHHHHHHHHHHcCCCCCCeeeeEEEecCCCceeecccCcccccCCCCcchhhhccccccc------hhHHHHHHHhhHHH
Q 019990 161 HNRAMGQISERLKVHVSDVKNVIIWGNHSSTQYPDVNHATVTTSKGEKPVREAVADDNWL------NTEFITTVQQRGAA 234 (332)
Q Consensus 161 ~~r~~~~~a~~~~v~~~~v~~~~V~G~hg~~~v~~~s~~~v~~~~~~~p~~~~~~~~~~~------~~~~~~~v~~~~~~ 234 (332)
+.|++..+++++++++..+..+ ++|+||+.++|+|+++.+ ++.|+.+++....|. ..++.+.+++.+++
T Consensus 154 ~~r~~~~~a~~~~v~~~~v~~~-~~G~~g~~~~~~w~k~~i----n~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~e~~~ 228 (319)
T 1lld_A 154 SARLRFLIAQQTGVNVKNVHAY-IAGEHGDSEVPLWESATI----GGVPMSDWTPLPGHDPLDADKREEIHQEVKNAAYK 228 (319)
T ss_dssp HHHHHHHHHHHHTCCGGGEECC-EEBSSSTTCEECTTSCEE----TTEEGGGCCCCTTCCCCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCHHHeEEE-EEeCCCCceeeeeecceE----CCccHHHHHhccccccCCHHHHHHHHHHHHHhhHh
Confidence 9999999999999999999886 589999999999999999 889998876432221 36788889999999
Q ss_pred HHHhcCCcchHHHHHHHHHHHHHHHcCCCCCcEEEEEEeecCCCCCCCCeEEEEeEEEe-CCeEEEecCCCCCHHHHHHH
Q 019990 235 IIKARKLSSALSAASSACDHIRDWVLGTPKGTWVSMGVYSDGSYGIPEGLIYSFPVTCE-KGEWSIVKGLKVDEFSRAKM 313 (332)
Q Consensus 235 i~~~~g~~~~~~~a~a~~~~i~~~~~~~~~~~i~~~~v~~~g~yg~~~~~~~s~Pv~~~-~G~~~~~~~~~l~~~E~~~l 313 (332)
|++.+|.+. ++.+.+.++++++++.+ ++.++++|++.+|+|+. .+.++|+|+.++ +|++++++ ++|+++|+++|
T Consensus 229 v~~~~G~~~-~~~a~~~~sm~~di~~~--~~~ei~~s~~~~G~~~~-~~~~~gvp~~~~~~Gv~~i~~-~~l~~~e~~~l 303 (319)
T 1lld_A 229 IINGKGATN-YAIGMSGVDIIEAVLHD--TNRILPVSSMLKDFHGI-SDICMSVPTLLNRQGVNNTIN-TPVSDKELAAL 303 (319)
T ss_dssp HHTSCCSCC-HHHHHHHHHHHHHHHTT--CCEEEEEEEECSSBTTB-CSSEEEEEEEEETTEEECCSC-CCCCHHHHHHH
T ss_pred hhhCCCCch-HHHHHHHHHHHHHHHcC--CCcEEEEEEEecCcCCc-cceEEEEEEEEeCCeeEEEcC-CCCCHHHHHHH
Confidence 999999665 45577788888887765 47899999999999988 799999999999 99999996 99999999999
Q ss_pred HHHHHHHHHHHHHH
Q 019990 314 DATAEELAEEKTLA 327 (332)
Q Consensus 314 ~~s~~~i~~~~~~~ 327 (332)
++|++.|++.++..
T Consensus 304 ~~s~~~l~~~~~~~ 317 (319)
T 1lld_A 304 KRSAETLKETAAQF 317 (319)
T ss_dssp HHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHh
Confidence 99999999998753
|
| >1s6y_A 6-phospho-beta-glucosidase; hydrolase, structural genomics, PSI, protein structure initi midwest center for structural genomics; 2.31A {Geobacillus stearothermophilus} SCOP: c.2.1.5 d.162.1.2 | Back alignment and structure |
|---|
Probab=100.00 E-value=6e-37 Score=292.91 Aligned_cols=311 Identities=13% Similarity=0.072 Sum_probs=229.3
Q ss_pred CCCCCcEEEEEcCCChh-HHHHHHHHHh--cccCCCCCCeEEEEEecccchhhhhhhHhhhhhhc---cCCccceEEeCC
Q 019990 1 MAKNPLRVLVTGAAGQI-GYALVPMIAR--GIMLGPDQPVILHMLDIEPAAEALNGVKMELIDAA---FPLLKGVVATTD 74 (332)
Q Consensus 1 m~~~~~kI~VtGaaG~I-Gs~l~~~L~~--~~~~~~~~~~~i~l~D~~~~~~~~~~~~~dl~~~~---~~~~~~v~~~~~ 74 (332)
|++ ++||+|+|| |++ |..++..|+. .++-. .+|+|+|+++..+++++ ..++.+.. .....++..++|
T Consensus 4 m~~-~~KIaVIGa-Gsv~~~al~~~L~~~~~~l~~----~ev~L~Di~~~~e~~~~-~~~~~~~~~~~~~~~~~i~~t~D 76 (450)
T 1s6y_A 4 MDK-RLKIATIGG-GSSYTPELVEGLIKRYHELPV----GELWLVDIPEGKEKLEI-VGALAKRMVEKAGVPIEIHLTLD 76 (450)
T ss_dssp ----CEEEEEETT-TCTTHHHHHHHHHHTTTTCCE----EEEEEECCGGGHHHHHH-HHHHHHHHHHHTTCCCEEEEESC
T ss_pred ccC-CCEEEEECC-CHHHHHHHHHHHHcCCCCCCC----CEEEEEEcCCChHHHHH-HHHHHHHHHhhcCCCcEEEEeCC
Confidence 533 679999995 666 8888888876 34311 38999999642245554 23443321 122345666778
Q ss_pred HHHHhCCCcEEEEecCCCCCCCCChhH--------------------HHhhhHHHHHHHHHHHHhhcCCCcEEEEEeCCh
Q 019990 75 VVEACKDVNIAVMVGGFPRKEGMERKD--------------------VMSKNVSIYKAQASALEKHAAPNCKVLVVANPA 134 (332)
Q Consensus 75 ~~~a~~~aDiVi~~ag~~~~~~~~~~~--------------------~~~~N~~~~~~i~~~i~~~~~~~~~viv~snp~ 134 (332)
.+++++|||+||++++.+++++.+|++ +..+|+++++++++.++++| |+++++++|||+
T Consensus 77 ~~eal~gAD~VVitagv~~~~~~~rd~~ip~~~g~~~~et~G~ggi~~~~rni~i~~~i~~~i~~~~-P~a~ii~~tNPv 155 (450)
T 1s6y_A 77 RRRALDGADFVTTQFRVGGLEARAKDERIPLKYGVIGQETNGPGGLFKGLRTIPVILDIIRDMEELC-PDAWLINFTNPA 155 (450)
T ss_dssp HHHHHTTCSEEEECCCTTHHHHHHHHHHTGGGGTCCCCSSSTHHHHHHHHHHHHHHHHHHHHHHHHC-TTCEEEECSSSH
T ss_pred HHHHhCCCCEEEEcCCCCCCcchhhhhhhhhhcCcccccccccchHHHHhhhHHHHHHHHHHHHHHC-CCeEEEEeCCcH
Confidence 889999999999999998877766653 36789999999999999998 999999999999
Q ss_pred hhHHHHHHHHCCCCCCCcEEEeecccHHHHHHHHHHHcCCCCCCeeeeEEEe-----------cCCCceeecccCcccc-
Q 019990 135 NTNALILKEFAPSIPAKNITCLTRLDHNRAMGQISERLKVHVSDVKNVIIWG-----------NHSSTQYPDVNHATVT- 202 (332)
Q Consensus 135 ~~~~~~~~~~~~~~~~~~i~~~t~l~~~r~~~~~a~~~~v~~~~v~~~~V~G-----------~hg~~~v~~~s~~~v~- 202 (332)
+.+|+.++++ + |.+|++|.|... .|+++.+|+.+|+++.+|+.+ ++| +||++++|.||...+.
T Consensus 156 divT~a~~k~-~--p~~rViG~c~~~-~r~~~~la~~lgv~~~~v~~~-v~GlNH~~w~~~v~~~G~d~~p~~~~~~~~~ 230 (450)
T 1s6y_A 156 GMVTEAVLRY-T--KQEKVVGLCNVP-IGMRMGVAKLLGVDADRVHID-FAGLNHMVFGLHVYLDGVEVTEKVIDLVAHP 230 (450)
T ss_dssp HHHHHHHHHH-C--CCCCEEECCSHH-HHHHHHHHHHHTSCGGGEEEE-EEEETTEEEEEEEEETTEECHHHHHHHHSCC
T ss_pred HHHHHHHHHh-C--CCCCEEEeCCcH-HHHHHHHHHHhCCCHHHcEEE-EEeeecceeEEEeeeCCcCchHhHHHHHhhh
Confidence 9999999997 3 666888887764 699999999999999999986 589 9999999999986541
Q ss_pred ---c----CCCCcchh------------hhcc-----cc---cc--------chhHHHHHHHhhHHHHH-----HhcC--
Q 019990 203 ---T----SKGEKPVR------------EAVA-----DD---NW--------LNTEFITTVQQRGAAII-----KARK-- 240 (332)
Q Consensus 203 ---~----~~~~~p~~------------~~~~-----~~---~~--------~~~~~~~~v~~~~~~i~-----~~~g-- 240 (332)
. +..+.|+. +++. ++ .| .+.++.+.+++.+++++ +.|+
T Consensus 231 ~~~g~~~~~~~~~~~~~~~~~~~g~~p~~y~~yy~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~ei~~~~~~~~k~~~ 310 (450)
T 1s6y_A 231 DRSGVTMKNIVDLGWEPDFLKGLKVLPCPYHRYYFQTDKMLAEELEAAKTKGTRAEVVQQLEKELFELYKDPNLAIKPPQ 310 (450)
T ss_dssp ------------CCCCHHHHHHHCSBCCGGGHHHHSHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTTTTCC--------
T ss_pred ccccccccccccCccHHHHHHhcCCccchhhhhhcCCHHHHHhhhccccccchHHHHHHHHHHHHHHHHhhhccccccch
Confidence 0 00012332 1110 11 00 23456677888899999 5554
Q ss_pred ---CcchHHHHHHHHHHHHHHHcCCCCCcEEEEEEeecCCC-CCCCCeEEEEeEEEe-CCeEEEecCCCCCHHHHHHHHH
Q 019990 241 ---LSSALSAASSACDHIRDWVLGTPKGTWVSMGVYSDGSY-GIPEGLIYSFPVTCE-KGEWSIVKGLKVDEFSRAKMDA 315 (332)
Q Consensus 241 ---~~~~~~~a~a~~~~i~~~~~~~~~~~i~~~~v~~~g~y-g~~~~~~~s~Pv~~~-~G~~~~~~~~~l~~~E~~~l~~ 315 (332)
++.+.. +.++++++.+++. |++++++++|+.+|+| |+|.++++++||+++ +|+..+.. .+|+++|+++++.
T Consensus 311 ~~~~~~~~~-~~~a~~ii~AI~~--d~~~~~~vsv~n~G~i~~lp~d~~vevP~vvg~~Gi~~i~~-~~L~~~e~~l~~~ 386 (450)
T 1s6y_A 311 LEKRGGAYY-SDAACSLISSIYN--DKRDIQPVNTRNNGAIASISAESAVEVNCVITKDGPKPIAV-GDLPVAVRGLVQQ 386 (450)
T ss_dssp ---CCSCCH-HHHHHHHHHHHHH--TCCCEEEEEEECTTSBTTSCTTSEEEEEEEEETTEEEECCC-BCCCHHHHHHHHH
T ss_pred hhcccchHH-HHHHHHHHHHHHc--CCCeEEEEEeecCceecCCCCCeEEEEeEEEcCCCeEEeec-CCCCHHHHHHHHH
Confidence 343333 4666666666555 4688999999999999 698999999999999 99999985 9999999999999
Q ss_pred HHHHHHHHHHHHh
Q 019990 316 TAEELAEEKTLAY 328 (332)
Q Consensus 316 s~~~i~~~~~~~~ 328 (332)
++..-+-.+++++
T Consensus 387 ~~~~e~l~veAa~ 399 (450)
T 1s6y_A 387 IKSFERVAAEAAV 399 (450)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 9887777776664
|
| >1up7_A 6-phospho-beta-glucosidase; hydrolase, family4 hydrolase, Na dependent; HET: G6P NAD; 2.4A {Thermotoga maritima} SCOP: c.2.1.5 d.162.1.2 PDB: 1up6_A* 1up4_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.7e-36 Score=287.13 Aligned_cols=304 Identities=13% Similarity=0.134 Sum_probs=228.2
Q ss_pred CCcEEEEEcCCChhHHHHHHHHHh--ccc-CCCCCCeEEEEEecccchhhhhhhHhhhhhhccCCccceEEeCCHHHHhC
Q 019990 4 NPLRVLVTGAAGQIGYALVPMIAR--GIM-LGPDQPVILHMLDIEPAAEALNGVKMELIDAAFPLLKGVVATTDVVEACK 80 (332)
Q Consensus 4 ~~~kI~VtGaaG~IGs~l~~~L~~--~~~-~~~~~~~~i~l~D~~~~~~~~~~~~~dl~~~~~~~~~~v~~~~~~~~a~~ 80 (332)
+++||+|+||.+..+..++..|+. .++ . .+|+|+|+++ ++++. ..++.+........+..++|.+++++
T Consensus 1 ~~~KI~IIGaG~v~~~~l~~~l~~~~~~l~~-----~el~L~Di~~--~~~~~-~~~~~~~~~~~~~~v~~t~d~~~al~ 72 (417)
T 1up7_A 1 RHMRIAVIGGGSSYTPELVKGLLDISEDVRI-----DEVIFYDIDE--EKQKI-VVDFVKRLVKDRFKVLISDTFEGAVV 72 (417)
T ss_dssp CCCEEEEETTTCTTHHHHHHHHHHHTTTSCC-----CEEEEECSCH--HHHHH-HHHHHHHHHTTSSEEEECSSHHHHHT
T ss_pred CCCEEEEECCCHHHHHHHHHHHHhcccCCCc-----CEEEEEeCCH--HHHHH-HHHHHHHHhhCCeEEEEeCCHHHHhC
Confidence 357999999644344444555665 444 3 3999999964 45554 55665532111145666678789999
Q ss_pred CCcEEEEecCCCCCCCCChhH--------------------HHhhhHHHHHHHHHHHHhhcCCCcEEEEEeCChhhHHHH
Q 019990 81 DVNIAVMVGGFPRKEGMERKD--------------------VMSKNVSIYKAQASALEKHAAPNCKVLVVANPANTNALI 140 (332)
Q Consensus 81 ~aDiVi~~ag~~~~~~~~~~~--------------------~~~~N~~~~~~i~~~i~~~~~~~~~viv~snp~~~~~~~ 140 (332)
|||+||+++|++++++++|++ +..+|+++++++++.++++| +++++++|||++.+|+.
T Consensus 73 ~AD~Viitagvg~~~~~~rd~~i~~k~glvgqeT~G~GGi~~~~rni~i~~~i~~~i~~~~--~A~lin~TNPvdi~t~a 150 (417)
T 1up7_A 73 DAKYVIFQFRPGGLKGRENDEGIPLKYGLIGQETTGVGGFSAALRAFPIVEEYVDTVRKTS--NATIVNFTNPSGHITEF 150 (417)
T ss_dssp TCSEEEECCCTTHHHHHHHHHHGGGGGTCCCCSSSTHHHHHHHHHHHHHHHHHHHHHHHTT--CCEEEECSSSHHHHHHH
T ss_pred CCCEEEEcCCCCCCCccchhhhhhhhcCcccccccccchhHHhhccHHHHHHHHHHHHHHC--CEEEEEeCChHHHHHHH
Confidence 999999999998877666642 24789999999999999997 89999999999999999
Q ss_pred HHHHCCCCCCCcEEEeecccHHHHHHHHHHHcCCCCCCeeeeEEEe-----------cCCCceeecccCc---ccccCCC
Q 019990 141 LKEFAPSIPAKNITCLTRLDHNRAMGQISERLKVHVSDVKNVIIWG-----------NHSSTQYPDVNHA---TVTTSKG 206 (332)
Q Consensus 141 ~~~~~~~~~~~~i~~~t~l~~~r~~~~~a~~~~v~~~~v~~~~V~G-----------~hg~~~v~~~s~~---~v~~~~~ 206 (332)
+++. + |.+|++|.|... .|+++.+|+.+|+++.+|+.+ ++| +||++++|.||.. .+.. ..
T Consensus 151 ~~k~-~--p~~rviG~c~~~-~r~~~~la~~lgv~~~~v~~~-v~GlNH~~w~~~~~~hG~d~~p~~~~~~~~~~~~-~~ 224 (417)
T 1up7_A 151 VRNY-L--EYEKFIGLCNVP-INFIREIAEMFSARLEDVFLK-YYGLNHLSFIEKVFVKGEDVTEKVFENLKLKLSN-IP 224 (417)
T ss_dssp HHHT-T--CCSSEEECCSHH-HHHHHHHHHHTTCCGGGEEEE-EEEETTEEEEEEEEETTEECHHHHHHHHTTC----CC
T ss_pred HHHh-C--CCCCEEEeCCCH-HHHHHHHHHHhCCCHHHCeEE-EEeecceeeEEEeecCCcEehhhHHHHHHHhhCC-Cc
Confidence 9996 3 666887877664 699999999999999999986 589 9999999999986 5500 02
Q ss_pred Ccchh-hhcc----------------ccc---c----chhHHHHHHHhhHHHHH----------HhcCCcchHHHHHHHH
Q 019990 207 EKPVR-EAVA----------------DDN---W----LNTEFITTVQQRGAAII----------KARKLSSALSAASSAC 252 (332)
Q Consensus 207 ~~p~~-~~~~----------------~~~---~----~~~~~~~~v~~~~~~i~----------~~~g~~~~~~~a~a~~ 252 (332)
+.|+. +++. ++. | .+.+..+++++.+++++ +.||.+ + . +.+++
T Consensus 225 ~~~~~~~~~~~~g~~p~~y~~~y~~~~~~~~~~~~~~~r~~~~~~~~~~~~~i~~~~~~~~~~l~~kg~t-~-~-~~~a~ 301 (417)
T 1up7_A 225 DEDFPTWFYDSVRLIVNPYLRYYLMEKKMFKKISTHELRAREVMKIEKELFEKYRTAVEIPEELTKRGGS-M-Y-STAAA 301 (417)
T ss_dssp TTSCCHHHHHHHCSEECGGGHHHHTHHHHHHHHHTSCCHHHHHHHHHHHHHHHHTTCSSCCGGGGGSTTT-T-H-HHHHH
T ss_pred CCchHHHHHHhcCCCccchhhhccCCHHHHHhccccchHHHHHHHHHHHHHHHHHhhcccchhhhhcCCc-H-H-HHHHH
Confidence 36762 3321 010 0 12223566778889999 345544 2 2 45666
Q ss_pred HHHHHHHcCCCCCcEEEEEEeecCCC-CCCCCeEEEEeEEEe-CCeEEEecCCCCCHHHHHHHHHHHHHHHHHHHHHhh
Q 019990 253 DHIRDWVLGTPKGTWVSMGVYSDGSY-GIPEGLIYSFPVTCE-KGEWSIVKGLKVDEFSRAKMDATAEELAEEKTLAYS 329 (332)
Q Consensus 253 ~~i~~~~~~~~~~~i~~~~v~~~g~y-g~~~~~~~s~Pv~~~-~G~~~~~~~~~l~~~E~~~l~~s~~~i~~~~~~~~~ 329 (332)
+++.+ +.+ |++++++++++.+|+| |+|.++++++||+++ +|+..+.. .+|+++|+++|+.++...+..++++++
T Consensus 302 ~ii~A-I~~-d~~~~~~vsv~n~G~i~~lp~d~~vevP~~vg~~Gi~~i~~-~~L~~~e~~~l~~~~~~e~l~veA~~~ 377 (417)
T 1up7_A 302 HLIRD-LET-DEGKIHIVNTRNNGSIENLPDDYVLEIPCYVRSGRVHTLSQ-GKGDHFALSFIHAVKMYERLTIEAYLK 377 (417)
T ss_dssp HHHHH-HHS-SSCEEEEEEEECTTSSTTSCTTCEEEEEEEEETTEEEEBCC-CCCCHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHH-HHc-CCCeEEEEEEecCCccCCCCCCeEEEEeEEEeCCceEEeec-CCCCHHHHHHHHHHHHHHHHHHHHHHh
Confidence 65655 454 4689999999999999 799999999999999 99999885 999999999999999999999888753
|
| >1u8x_X Maltose-6'-phosphate glucosidase; structural genomics, PSI, protein structure initiative, MCSG glucosidase, NAD-dependent; HET: G6P NAD; 2.05A {Bacillus subtilis} SCOP: c.2.1.5 d.162.1.2 | Back alignment and structure |
|---|
Probab=100.00 E-value=1.7e-34 Score=276.99 Aligned_cols=308 Identities=15% Similarity=0.142 Sum_probs=218.9
Q ss_pred CCcEEEEEcCCChh-HHHHHHHHHhc--ccCCCCCCeEEEEEecccchhhhhhhHhhhhhhc---cCCccceEEeCCHHH
Q 019990 4 NPLRVLVTGAAGQI-GYALVPMIARG--IMLGPDQPVILHMLDIEPAAEALNGVKMELIDAA---FPLLKGVVATTDVVE 77 (332)
Q Consensus 4 ~~~kI~VtGaaG~I-Gs~l~~~L~~~--~~~~~~~~~~i~l~D~~~~~~~~~~~~~dl~~~~---~~~~~~v~~~~~~~~ 77 (332)
+++||+|+|| |.+ |.+++..|+.. ++.+ .+|+|+|+++ +++++. .++.+.. .....++..++|+.+
T Consensus 27 ~~~KIaVIGa-Gsv~~~ala~~L~~~~~~l~~----~eV~L~Di~~--e~~~~~-~~~~~~~l~~~~~~~~I~~t~D~~e 98 (472)
T 1u8x_X 27 KSFSIVIAGG-GSTFTPGIVLMLLDHLEEFPI----RKLKLYDNDK--ERQDRI-AGACDVFIREKAPDIEFAATTDPEE 98 (472)
T ss_dssp CCEEEEEECT-TSSSHHHHHHHHHHTTTTSCE----EEEEEECSCH--HHHHHH-HHHHHHHHHHHCTTSEEEEESCHHH
T ss_pred CCCEEEEECC-CHHHHHHHHHHHHhCCCCCCC----CEEEEEeCCH--HHHHHH-HHHHHHHhccCCCCCEEEEECCHHH
Confidence 3569999995 766 66688778776 4311 3899999964 455553 3554321 122346777778889
Q ss_pred HhCCCcEEEEecCCCCCCCCChhHH--------------------HhhhHHHHHHHHHHHHhhcCCCcEEEEEeCChhhH
Q 019990 78 ACKDVNIAVMVGGFPRKEGMERKDV--------------------MSKNVSIYKAQASALEKHAAPNCKVLVVANPANTN 137 (332)
Q Consensus 78 a~~~aDiVi~~ag~~~~~~~~~~~~--------------------~~~N~~~~~~i~~~i~~~~~~~~~viv~snp~~~~ 137 (332)
++++||+||++++.++.++.+|++. ..+|+++++++++.++++| |+++++++|||++.+
T Consensus 99 al~~AD~VViaag~~~~~g~~rd~~ip~k~g~~~~eT~G~ggl~~~~rni~i~~~i~~~i~~~~-P~A~ii~~TNPvdi~ 177 (472)
T 1u8x_X 99 AFTDVDFVMAHIRVGKYAMRALDEQIPLKYGVVGQETCGPGGIAYGMRSIGGVLEILDYMEKYS-PDAWMLNYSNPAAIV 177 (472)
T ss_dssp HHSSCSEEEECCCTTHHHHHHHHHHHHHTTTCCCCSSSHHHHHHHHHHHHHHHHHHHHHHHHHC-TTCEEEECCSCHHHH
T ss_pred HHcCCCEEEEcCCCccccccchhhhhhhhcCcccccccCchhHHHHhhhHHHHHHHHHHHHHHC-CCeEEEEeCCcHHHH
Confidence 9999999999999877666666443 6789999999999999998 999999999999999
Q ss_pred HHHHHHHCCCCCCCcEEEeecccHHHHHHHHHHHcCCCC-CCeeeeEEEe-----------c-CCCceeecccCcccc--
Q 019990 138 ALILKEFAPSIPAKNITCLTRLDHNRAMGQISERLKVHV-SDVKNVIIWG-----------N-HSSTQYPDVNHATVT-- 202 (332)
Q Consensus 138 ~~~~~~~~~~~~~~~i~~~t~l~~~r~~~~~a~~~~v~~-~~v~~~~V~G-----------~-hg~~~v~~~s~~~v~-- 202 (332)
|+.+++. + |+.|++|.|... .|+++.+|+.+|+++ .+|+.+ ++| + ||++++|.||...+.
T Consensus 178 T~~~~k~-~--p~~rViG~c~~~-~r~~~~la~~lgv~~~~~v~~~-v~GlNH~~W~~~~~~~hG~d~~p~~~~~~~~~g 252 (472)
T 1u8x_X 178 AEATRRL-R--PNSKILNICDMP-VGIEDRMAQILGLSSRKEMKVR-YYGLNHFGWWTSIQDQEGNDLMPKLKEHVSQYG 252 (472)
T ss_dssp HHHHHHH-S--TTCCEEECCSHH-HHHHHHHHHHHTCSCGGGEEEE-EEEETTEEEEEEEEETTCCBCHHHHHHHHHHHS
T ss_pred HHHHHHh-C--CCCCEEEeCCcH-HHHHHHHHHHhCcCchhceeEE-EeccchhhheeeeEeCCCCEehHhHHHHHHhcC
Confidence 9999997 3 666888887764 599999999999998 999986 589 8 999999999985530
Q ss_pred -cCCC-----Ccchh-hh-------------cccc--cc--chhHHHH----------HHHh----hHHHHHH-h--cC-
Q 019990 203 -TSKG-----EKPVR-EA-------------VADD--NW--LNTEFIT----------TVQQ----RGAAIIK-A--RK- 240 (332)
Q Consensus 203 -~~~~-----~~p~~-~~-------------~~~~--~~--~~~~~~~----------~v~~----~~~~i~~-~--~g- 240 (332)
.+.+ ..|+. ++ +..+ .| ..+++.+ .+++ ..+++++ . ++
T Consensus 253 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~Yl~yy~~~~~~~e~~~~~~~r~~~v~~~~~~~~~~~~~~~~~~~~ 332 (472)
T 1u8x_X 253 YIPKTEAEAVEASWNDTFAKARDVQAADPDTLPNTYLQYYLFPDDMVKKSNPNHTRANEVMEGREAFIFSQCDMITREQS 332 (472)
T ss_dssp SCCCC-------CTTSHHHHHHHHHHTSTTSEECGGGHHHHSHHHHHTTSCSSSCHHHHHHHHTTTTTTTTHHHHHHHTS
T ss_pred CCccccccccccchHHHHHhhcCccccccccCCccchhcccCCHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHhhhhcCC
Confidence 0000 01221 11 1100 01 0011111 1222 2223333 3 44
Q ss_pred --Ccch--HHHHHHHHHHHHHHHcCCCCCcEEEEEEeecCCC-CCCCCeEEEEeEEEe-CCeEEEecCCCCCHHHHHHHH
Q 019990 241 --LSSA--LSAASSACDHIRDWVLGTPKGTWVSMGVYSDGSY-GIPEGLIYSFPVTCE-KGEWSIVKGLKVDEFSRAKMD 314 (332)
Q Consensus 241 --~~~~--~~~a~a~~~~i~~~~~~~~~~~i~~~~v~~~g~y-g~~~~~~~s~Pv~~~-~G~~~~~~~~~l~~~E~~~l~ 314 (332)
.+.+ ...+.++++++.+++. |++++++++|+.+|+| |+|.++++++||+++ +|+..+.. .+|+++|+++++
T Consensus 333 ~~~~~~~~~~~~~~a~~ii~AI~~--d~~~v~~vsv~n~G~i~glp~d~~veVP~vvg~~Gi~pi~~-~~Lp~~~~~l~~ 409 (472)
T 1u8x_X 333 SENSEIKIDDHASYIVDLARAIAY--NTGERMLLIVENNGAIANFDPTAMVEVPCIVGSNGPEPITV-GTIPQFQKGLME 409 (472)
T ss_dssp CCSCSSCCCTTTHHHHHHHHHHHH--TCCEEEEEEEECTTSBTTSCTTSEEEEEEEEETTEEEECCC-BCCCHHHHHHHH
T ss_pred cccccccccHHHHHHHHHHHHHhc--CCCeEEEEEeecCceecCcCCCeEEEEeEEEcCCCceEeec-CCCCHHHHHHHH
Confidence 1111 1335666666666555 4689999999999999 699999999999999 99999885 899999999988
Q ss_pred HHHHHHHHHHHHHh
Q 019990 315 ATAEELAEEKTLAY 328 (332)
Q Consensus 315 ~s~~~i~~~~~~~~ 328 (332)
.-...-+-.+++++
T Consensus 410 ~~~~~e~l~veAa~ 423 (472)
T 1u8x_X 410 QQVSVEKLTVEAWA 423 (472)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 77666555555553
|
| >3fef_A Putative glucosidase LPLD; gulosidase, structural genomics, unknown function, glycosidase, hydrolase, manganese, metal-binding, NAD, PSI- 2; 2.20A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=99.96 E-value=8.4e-28 Score=228.66 Aligned_cols=300 Identities=14% Similarity=0.166 Sum_probs=206.8
Q ss_pred CCCCCcEEEEEcCCChh--HHHHHHHHHhcccCCCCCCeEEEEEecccchhhhhh--hHhhhhhhccCCccceEEeCCHH
Q 019990 1 MAKNPLRVLVTGAAGQI--GYALVPMIARGIMLGPDQPVILHMLDIEPAAEALNG--VKMELIDAAFPLLKGVVATTDVV 76 (332)
Q Consensus 1 m~~~~~kI~VtGaaG~I--Gs~l~~~L~~~~~~~~~~~~~i~l~D~~~~~~~~~~--~~~dl~~~~~~~~~~v~~~~~~~ 76 (332)
|+++++||+|+| +|.+ |..++..|+....+. .+|+|+|+++ ++++. ...+... ....+++.++|+.
T Consensus 1 m~m~~~KIaVIG-aGs~g~g~~la~~l~~~~~~~----geV~L~Di~~--e~le~~~~~~~~l~---~~~~~I~~TtD~~ 70 (450)
T 3fef_A 1 MSLDQIKIAYIG-GGSQGWARSLMSDLSIDERMS----GTVALYDLDF--EAAQKNEVIGNHSG---NGRWRYEAVSTLK 70 (450)
T ss_dssp --CCCEEEEEET-TTCSSHHHHHHHHHHHCSSCC----EEEEEECSSH--HHHHHHHHHHTTST---TSCEEEEEESSHH
T ss_pred CCCCCCEEEEEC-CChhHhHHHHHHHHHhccccC----CeEEEEeCCH--HHHHHHHHHHHHHh---ccCCeEEEECCHH
Confidence 666778999999 5887 568888877633111 2899999964 23321 1111110 1234677788999
Q ss_pred HHhCCCcEEEEecC------------CCCCCCCChh--HHHh--------hhHHHHHHHHHHHHhhcCCCcEEEEEeCCh
Q 019990 77 EACKDVNIAVMVGG------------FPRKEGMERK--DVMS--------KNVSIYKAQASALEKHAAPNCKVLVVANPA 134 (332)
Q Consensus 77 ~a~~~aDiVi~~ag------------~~~~~~~~~~--~~~~--------~N~~~~~~i~~~i~~~~~~~~~viv~snp~ 134 (332)
+|+++||+||.++. +|+++|..+. +... +|+++++++++.++++| |+++++++|||+
T Consensus 71 eAl~dADfVI~airvG~~~~~~~De~ip~k~G~~~~vget~g~GGi~~alr~~~i~~~i~~~i~~~~-p~a~~i~~tNPv 149 (450)
T 3fef_A 71 KALSAADIVIISILPGSLDDMEVDVHLPERCGIYQSVGDTVGPGGIIRGLRAVPIFAEIARAIRDYA-PESWVINYTNPM 149 (450)
T ss_dssp HHHTTCSEEEECCCSSCHHHHHHHHHGGGGGTCCCSSCSSSHHHHHHHHHHHHHHHHHHHHHHHHHC-TTSEEEECCSSH
T ss_pred HHhcCCCEEEeccccCCcccchhhhhhhhccCccccchhhcCCchhhcccccHHHHHHHHHHHHHHC-CCeEEEEecCch
Confidence 99999999999984 4777777655 4444 79999999999999998 999999999999
Q ss_pred hhHHHHHHHHCCCCCCCcEEEeecccHHHHHHHHHHHc----C---CCCCCeeeeEEEe-cCCCceeecccCcccccCCC
Q 019990 135 NTNALILKEFAPSIPAKNITCLTRLDHNRAMGQISERL----K---VHVSDVKNVIIWG-NHSSTQYPDVNHATVTTSKG 206 (332)
Q Consensus 135 ~~~~~~~~~~~~~~~~~~i~~~t~l~~~r~~~~~a~~~----~---v~~~~v~~~~V~G-~hg~~~v~~~s~~~v~~~~~ 206 (332)
+++|+++++. +|+.|++|.|... .+++..+|+.+ | +++.++... ++| +| +.+|+++++ +
T Consensus 150 di~t~~~~k~---~p~~rviG~C~~~-~~~~~~~a~~l~~~lg~~~~~~~~v~~~-~~GlNH----~~w~~~~~~----~ 216 (450)
T 3fef_A 150 SVCTRVLYKV---FPGIKAIGCCHEV-FGTQKLLAEMVTERLGIEVPRREDIRVN-VLGINH----FTWITKASY----R 216 (450)
T ss_dssp HHHHHHHHHH---CTTCEEEECCSHH-HHHHHHHHHHHHHHHCCCCSCGGGEEEE-EEEETT----EEEEEEEEE----T
T ss_pred HHHHHHHHHH---CCCCCEEEeCCcH-HHHHHHHHHHHHhhcCCCCCChhHeEEE-EeeecC----eEeEEEEEE----C
Confidence 9999999886 5778899999874 88999999999 5 679999976 579 88 889999988 7
Q ss_pred Ccchhhhc----c---cc-------ccch----------hHHHHHH----------------------------------
Q 019990 207 EKPVREAV----A---DD-------NWLN----------TEFITTV---------------------------------- 228 (332)
Q Consensus 207 ~~p~~~~~----~---~~-------~~~~----------~~~~~~v---------------------------------- 228 (332)
|+++...+ . ++ .|.. -++.+..
T Consensus 217 G~d~~p~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~p~~~~~h~~ey~p~~Y~~~~~~~~~~~~~~~ 296 (450)
T 3fef_A 217 HIDLLPIFREFSAHYGESGYELEGECWRDSVFCSAHRVAFDLFETYGAIPAAGDRHLAEFLPGPYLKQPEVWKFHLTPIS 296 (450)
T ss_dssp TEEHHHHHHHHHHHHTTTCCCCTTCCTTSCTTCCCSHHHHHHHHHHSSEECSCHHHHTTSSCSSGGGCTTTTTCCCCCHH
T ss_pred CEEChHHHHHHHHhhcccccccccccccccccchhhHHHHHHHHHcCCcccccccchhcccchhhcCCHHHhcccccchh
Confidence 77766422 1 00 1100 0111100
Q ss_pred ------Hhh---HHHHHHhcCC-cchHHHHHHHHHHHHHHHcCCCCCcEEEEEEeecCCC-CCCCCeEEEEeEEEe-CCe
Q 019990 229 ------QQR---GAAIIKARKL-SSALSAASSACDHIRDWVLGTPKGTWVSMGVYSDGSY-GIPEGLIYSFPVTCE-KGE 296 (332)
Q Consensus 229 ------~~~---~~~i~~~~g~-~~~~~~a~a~~~~i~~~~~~~~~~~i~~~~v~~~g~y-g~~~~~~~s~Pv~~~-~G~ 296 (332)
.+. -.+..+.... ....+ +.++++++. +|.+ |+++++++++..+|+| |+|.++++++||+++ +|+
T Consensus 297 ~r~~~~~~~~~~~~~~~~~~~~~~~~~~-~e~~~~ii~-aI~~-d~~~~~~vnv~n~G~i~~lp~d~~vevP~~v~~~Gi 373 (450)
T 3fef_A 297 FRKQDRAEKRQETERLIVQQRGVAEKAS-GEEGVNIIA-ALLG-LGELVTNVNMPNQGQVLNLPIQAIVETNAFITRNRV 373 (450)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCCCCCSCC-SCCHHHHHH-HHTT-SCCEEEEEEEECSSSSTTSCTTSEEEEEEEEETTEE
T ss_pred hHHHHHHHHHHHHHHHhcCCcCcCcCcc-HHHHHHHHH-HHHc-CCCeEEEEEeecCcEecCCCCCeEEEEEEEEcCCCc
Confidence 000 0001100000 00000 122345444 4554 5689999999999998 899999999999999 898
Q ss_pred EEEecCCCCCHHHHHHHHHHHHHHHHHHHHHh
Q 019990 297 WSIVKGLKVDEFSRAKMDATAEELAEEKTLAY 328 (332)
Q Consensus 297 ~~~~~~~~l~~~E~~~l~~s~~~i~~~~~~~~ 328 (332)
..+.. .+|++.++.+++.-...-+-.+++++
T Consensus 374 ~pi~~-g~Lp~~~~~l~~~~~~~e~l~veAa~ 404 (450)
T 3fef_A 374 QPILS-GALPKGVEMLAARHISNQEAVADAGL 404 (450)
T ss_dssp EEBCC-CCCCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred eeccc-CCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 88774 79999999988776655555555553
|
| >1obb_A Maltase, alpha-glucosidase; glycosidase, sulfinic acid, NAD+, maltose, hydrolase; HET: MAL NAD; 1.90A {Thermotoga maritima} SCOP: c.2.1.5 d.162.1.2 | Back alignment and structure |
|---|
Probab=99.90 E-value=1.1e-21 Score=188.08 Aligned_cols=168 Identities=18% Similarity=0.241 Sum_probs=124.2
Q ss_pred CcEEEEEcCCChh--HHHHHHHHHh-cccCCCCCCeEEEEEecccchhhhhhhHhhhhhh---ccCCccceEEeCCHHHH
Q 019990 5 PLRVLVTGAAGQI--GYALVPMIAR-GIMLGPDQPVILHMLDIEPAAEALNGVKMELIDA---AFPLLKGVVATTDVVEA 78 (332)
Q Consensus 5 ~~kI~VtGaaG~I--Gs~l~~~L~~-~~~~~~~~~~~i~l~D~~~~~~~~~~~~~dl~~~---~~~~~~~v~~~~~~~~a 78 (332)
++||+|+| +|.+ |.+++..|+. .++.+ .+|+|+|++. +++.+. .+..+. ......++..++|+.++
T Consensus 3 ~~KIaVIG-AGsVg~g~ala~~La~~~~l~~----~eV~L~Di~~--e~l~~~-~~~~~~~l~~~~~~~~I~~ttD~~ea 74 (480)
T 1obb_A 3 SVKIGIIG-AGSAVFSLRLVSDLCKTPGLSG----STVTLMDIDE--ERLDAI-LTIAKKYVEEVGADLKFEKTMNLDDV 74 (480)
T ss_dssp CCEEEEET-TTCHHHHHHHHHHHHTCGGGTT----CEEEEECSCH--HHHHHH-HHHHHHHHHHTTCCCEEEEESCHHHH
T ss_pred CCEEEEEC-CCchHHHHHHHHHHHhcCcCCC----CEEEEEeCCH--HHHHHH-HHHHHHHhccCCCCcEEEEECCHHHH
Confidence 57999999 5887 4556777764 33312 3899999964 455542 233221 11223467777888889
Q ss_pred hCCCcEEEEecCC------------CCCCCCCh--hH------------HHhhhHHHHHHHHHHHHhhcCCCcEEEEEeC
Q 019990 79 CKDVNIAVMVGGF------------PRKEGMER--KD------------VMSKNVSIYKAQASALEKHAAPNCKVLVVAN 132 (332)
Q Consensus 79 ~~~aDiVi~~ag~------------~~~~~~~~--~~------------~~~~N~~~~~~i~~~i~~~~~~~~~viv~sn 132 (332)
+++||+||++++. +.+.|..+ .+ +..+|+++++++++.++++| |+++++++||
T Consensus 75 l~dAD~VIiaagv~~~~~~~~dE~ip~K~g~~~~l~dt~g~g~~~~G~~~~~rni~i~~~i~~~i~~~~-P~A~ii~~TN 153 (480)
T 1obb_A 75 IIDADFVINTAMVGGHTYLEKVRQIGEKYGYYRGIDAQEFNMVSDYYTFSNYNQLKYFVDIARKIEKLS-PKAWYLQAAN 153 (480)
T ss_dssp HTTCSEEEECCCTTHHHHHHHHHHHHHHTTCTTCTTCBTTBCCTTCCSSSCHHHHHHHHHHHHHHHHHC-TTCEEEECSS
T ss_pred hCCCCEEEECCCcccccccccccccccccccccchhhhcCCccchhhhHHhhhhHHHHHHHHHHHHHHC-CCeEEEEeCC
Confidence 9999999999975 23334333 22 35689999999999999998 9999999999
Q ss_pred ChhhHHHHHHHHCCCCCCCcEEEeecccHHHHHHHHHHHcCCCCCCeeeeEEEe-cC
Q 019990 133 PANTNALILKEFAPSIPAKNITCLTRLDHNRAMGQISERLKVHVSDVKNVIIWG-NH 188 (332)
Q Consensus 133 p~~~~~~~~~~~~~~~~~~~i~~~t~l~~~r~~~~~a~~~~v~~~~v~~~~V~G-~h 188 (332)
|++++++++++ +|+.|++|.|.++. ++++++ +.+|+++.+|+.+ |+| +|
T Consensus 154 Pvdi~t~~~~k----~p~~rviG~c~~~~-~~~~~l-~~lgv~~~~v~~~-v~GlNH 203 (480)
T 1obb_A 154 PIFEGTTLVTR----TVPIKAVGFCHGHY-GVMEIV-EKLGLEEEKVDWQ-VAGVNH 203 (480)
T ss_dssp CHHHHHHHHHH----HSCSEEEEECSGGG-HHHHHH-HHTTCCGGGEEEE-EEEETT
T ss_pred cHHHHHHHHHH----CCCCcEEecCCCHH-HHHHHH-HHhCCCHHHceEE-EEeecc
Confidence 99999999988 47778777765554 378899 9999999999986 578 45
|
| >3u95_A Glycoside hydrolase, family 4; hydrolysis, cytosol; 2.00A {Thermotoga neapolitana} PDB: 1vjt_A* | Back alignment and structure |
|---|
Probab=99.85 E-value=1.5e-19 Score=173.94 Aligned_cols=170 Identities=21% Similarity=0.209 Sum_probs=123.3
Q ss_pred cEEEEEcCCChhHHH--HHHHHHhcccCCCCCCeEEEEEecccchhhhhhhHhhhhhhcc--CCccceEEeCCHHHHhCC
Q 019990 6 LRVLVTGAAGQIGYA--LVPMIARGIMLGPDQPVILHMLDIEPAAEALNGVKMELIDAAF--PLLKGVVATTDVVEACKD 81 (332)
Q Consensus 6 ~kI~VtGaaG~IGs~--l~~~L~~~~~~~~~~~~~i~l~D~~~~~~~~~~~~~dl~~~~~--~~~~~v~~~~~~~~a~~~ 81 (332)
|||+|+| +|++|++ ++..|+....++. ...+|+|+|++. +++++...++.+... .....+..++|.++|++|
T Consensus 1 mKI~iIG-aGs~~~t~~l~~~~~~~~~l~~-~~~ei~L~Di~~--~rl~~~~~~~~~~~~~~~~~~~i~~t~d~~eAl~g 76 (477)
T 3u95_A 1 MKISIVG-AGSVRFALQLVEDIAQTDELSR-EDTHIYLMDVHE--RRLNASYILARKYVEELNSPVKVVKTESLDEAIEG 76 (477)
T ss_dssp CEEEEET-TTSHHHHHHHHHHHHTCTTTCS-TTCEEEEECSCH--HHHHHHHHHHHHHHHHHTCCCEEEEESCHHHHHTT
T ss_pred CEEEEEC-CCchhhHHHHHHHHHhhHhcCC-CCCEEEEECCCH--HHHHHHHHHHHHHHHHcCCCeEEEEeCCHHHHhCC
Confidence 5899999 5988866 3444554322110 013899999964 567777666665432 122457778899999999
Q ss_pred CcEEEEecCCC-------------------CCCCCChhHHH---------------hhhHHHHHHHHHHHHhhcCCCcEE
Q 019990 82 VNIAVMVGGFP-------------------RKEGMERKDVM---------------SKNVSIYKAQASALEKHAAPNCKV 127 (332)
Q Consensus 82 aDiVi~~ag~~-------------------~~~~~~~~~~~---------------~~N~~~~~~i~~~i~~~~~~~~~v 127 (332)
||+||+++|.. +++|.+|..+. -+|++++.++++.++++| |++++
T Consensus 77 AD~Vi~~~g~~~~Rvg~~~~r~~de~~~ip~k~G~~~~~l~qet~g~gG~~~~lR~~~~i~v~~~i~~~i~~~~-P~A~~ 155 (477)
T 3u95_A 77 ADFIINTAYPYDPRYHDSGSQRWDEVTKVGEKHGYYRGIDSQELNMVSTYTYVLSSYPDVKLALEIAEKMKKMA-PKAYL 155 (477)
T ss_dssp CSEEEECCCCCCTTTCSSHHHHHHHHHHHHHHTTCTTCTTCBTTBCCTTSCSTTTTHHHHHHHHHHHHHHHHHC-TTCEE
T ss_pred CCEEEECcccccccccccccccceeeeccCcccceeecccccccCCccchhHHHhhhhhHHHHHHHHHHHHhhC-CCeEE
Confidence 99999998752 24444443321 248999999999999998 99999
Q ss_pred EEEeCChhhHHHHHHHHCCCCCCCcEEEeecccHHHHHHHHHHHcCCCCCCeeeeEEEec
Q 019990 128 LVVANPANTNALILKEFAPSIPAKNITCLTRLDHNRAMGQISERLKVHVSDVKNVIIWGN 187 (332)
Q Consensus 128 iv~snp~~~~~~~~~~~~~~~~~~~i~~~t~l~~~r~~~~~a~~~~v~~~~v~~~~V~G~ 187 (332)
+++|||++.+|+.+.++ ++ .+++|.|.-. +....+++.+|+++++|+.. +.|-
T Consensus 156 in~tNP~~i~t~a~~~~-~~---~k~vGlC~~~--~~~~~~~~~Lg~~~~~v~~~-~~Gl 208 (477)
T 3u95_A 156 MQTANPVFEITQAVRRW-TG---ANIIGFCHGV--AGVYEVFERLGLDPEEVDWQ-VAGV 208 (477)
T ss_dssp EECSSCHHHHHHHHHHH-HC---CCEEEECCGG--GHHHHHHHHTTCCGGGEEEE-EEEE
T ss_pred EEecChHHHHHHHHHHh-CC---CCeEEECCCH--HHHHHHHHHhCCCHHHcEEE-Eeec
Confidence 99999999999999886 43 4677888644 33445778899999999975 4784
|
| >2c29_D Dihydroflavonol 4-reductase; flavonoids, short dehydrogenase reductase, NADPH, dihydroquercetin, rossmann fold, oxidoreductase; HET: NAP DQH; 1.81A {Vitis vinifera} PDB: 2iod_A* 2nnl_D* 3bxx_A* 3c1t_A* | Back alignment and structure |
|---|
Probab=99.47 E-value=2.3e-13 Score=125.26 Aligned_cols=180 Identities=13% Similarity=0.083 Sum_probs=111.7
Q ss_pred CCCCCcEEEEEcCCChhHHHHHHHHHhcccCCCCCCeEEEEEecccch-hhhhhhHhhhhh--hcc-CCccceEEeCCHH
Q 019990 1 MAKNPLRVLVTGAAGQIGYALVPMIARGIMLGPDQPVILHMLDIEPAA-EALNGVKMELID--AAF-PLLKGVVATTDVV 76 (332)
Q Consensus 1 m~~~~~kI~VtGaaG~IGs~l~~~L~~~~~~~~~~~~~i~l~D~~~~~-~~~~~~~~dl~~--~~~-~~~~~v~~~~~~~ 76 (332)
|..++++|+||||+||||++++..|++.|+ +|+.++++... +.+.. ..++.. ... ....|+....++.
T Consensus 1 ~~~~~~~vlVTGatGfIG~~l~~~L~~~G~-------~V~~~~r~~~~~~~~~~-~~~~~~~~~~~~~~~~Dl~d~~~~~ 72 (337)
T 2c29_D 1 MGSQSETVCVTGASGFIGSWLVMRLLERGY-------TVRATVRDPTNVKKVKH-LLDLPKAETHLTLWKADLADEGSFD 72 (337)
T ss_dssp -----CEEEETTTTSHHHHHHHHHHHHTTC-------EEEEEESCTTCHHHHHH-HHTSTTHHHHEEEEECCTTSTTTTH
T ss_pred CCCCCCEEEEECCchHHHHHHHHHHHHCCC-------EEEEEECCcchhHHHHH-HHhcccCCCeEEEEEcCCCCHHHHH
Confidence 777888999999999999999999999875 78777664321 01110 011111 001 1123554455677
Q ss_pred HHhCCCcEEEEecCCCCCCC-CChhHHHhhhHHHHHHHHHHHHhhcCCCcEEEEEeCChhhHH-----HHHHHHCC----
Q 019990 77 EACKDVNIAVMVGGFPRKEG-MERKDVMSKNVSIYKAQASALEKHAAPNCKVLVVANPANTNA-----LILKEFAP---- 146 (332)
Q Consensus 77 ~a~~~aDiVi~~ag~~~~~~-~~~~~~~~~N~~~~~~i~~~i~~~~~~~~~viv~snp~~~~~-----~~~~~~~~---- 146 (332)
++++++|+|||+|+...... .+..++++.|+.++.++++++.+.+ .-.++|++|+...... ..+.+...
T Consensus 73 ~~~~~~d~Vih~A~~~~~~~~~~~~~~~~~nv~gt~~ll~a~~~~~-~~~riV~~SS~~~~~~~~~~~~~~~E~~~~~~~ 151 (337)
T 2c29_D 73 EAIKGCTGVFHVATPMDFESKDPENEVIKPTIEGMLGIMKSCAAAK-TVRRLVFTSSAGTVNIQEHQLPVYDESCWSDME 151 (337)
T ss_dssp HHHTTCSEEEECCCCCCSSCSSHHHHTHHHHHHHHHHHHHHHHHHS-CCCEEEEECCGGGTSCSSSCCSEECTTCCCCHH
T ss_pred HHHcCCCEEEEeccccCCCCCChHHHHHHHHHHHHHHHHHHHHhCC-CccEEEEeeeHhhcccCCCCCcccCcccCCchh
Confidence 78899999999998642111 2223477889999999999999874 2236677765321100 00000000
Q ss_pred ----CCCCCcEEEeecccHHHHHHHHHHHcCCCCCCeeeeEEEecCC
Q 019990 147 ----SIPAKNITCLTRLDHNRAMGQISERLKVHVSDVKNVIIWGNHS 189 (332)
Q Consensus 147 ----~~~~~~i~~~t~l~~~r~~~~~a~~~~v~~~~v~~~~V~G~hg 189 (332)
..++...|+.+|...+++...+++..|++...+|..+|||+..
T Consensus 152 ~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~~gi~~~~lrp~~v~Gp~~ 198 (337)
T 2c29_D 152 FCRAKKMTAWMYFVSKTLAEQAAWKYAKENNIDFITIIPTLVVGPFI 198 (337)
T ss_dssp HHHHHCCTTHHHHHHHHHHHHHHHHHHHHHTCCEEEEEECEEESCCS
T ss_pred hhcccCCccchHHHHHHHHHHHHHHHHHHcCCcEEEEeCCceECCCC
Confidence 0012225788888888888888877899999999999999853
|
| >4egb_A DTDP-glucose 4,6-dehydratase; rhamnose pathway, center for structural genomics of infectio diseases, csgid, niaid; HET: NAD SUC; 3.00A {Bacillus anthracis} | Back alignment and structure |
|---|
Probab=99.46 E-value=1.3e-14 Score=134.12 Aligned_cols=179 Identities=14% Similarity=0.093 Sum_probs=113.2
Q ss_pred CCCCCcEEEEEcCCChhHHHHHHHHHhcccCCCCCCeEEEEEecccchhhhhhhHhhhhh-hcc-CCccceEEeCCHHHH
Q 019990 1 MAKNPLRVLVTGAAGQIGYALVPMIARGIMLGPDQPVILHMLDIEPAAEALNGVKMELID-AAF-PLLKGVVATTDVVEA 78 (332)
Q Consensus 1 m~~~~~kI~VtGaaG~IGs~l~~~L~~~~~~~~~~~~~i~l~D~~~~~~~~~~~~~dl~~-~~~-~~~~~v~~~~~~~~a 78 (332)
|+.++|||+||||+||||++++..|++.|. ..+|+.+|+........ ...++.. ... ....|+.....+.++
T Consensus 20 ~~~~~~~vlVtGatG~iG~~l~~~L~~~g~-----~~~v~~~~~~~~~~~~~-~l~~~~~~~~~~~~~~Dl~d~~~~~~~ 93 (346)
T 4egb_A 20 FQSNAMNILVTGGAGFIGSNFVHYMLQSYE-----TYKIINFDALTYSGNLN-NVKSIQDHPNYYFVKGEIQNGELLEHV 93 (346)
T ss_dssp ----CEEEEEETTTSHHHHHHHHHHHHHCT-----TEEEEEEECCCTTCCGG-GGTTTTTCTTEEEEECCTTCHHHHHHH
T ss_pred cccCCCeEEEECCccHHHHHHHHHHHhhCC-----CcEEEEEeccccccchh-hhhhhccCCCeEEEEcCCCCHHHHHHH
Confidence 335678999999999999999999998773 13788888653111111 1111110 000 112344444456667
Q ss_pred hCC--CcEEEEecCCCCCC--CCChhHHHhhhHHHHHHHHHHHHhhcCCCcEEEEEeCChhhHH-----HHHHHHCCCCC
Q 019990 79 CKD--VNIAVMVGGFPRKE--GMERKDVMSKNVSIYKAQASALEKHAAPNCKVLVVANPANTNA-----LILKEFAPSIP 149 (332)
Q Consensus 79 ~~~--aDiVi~~ag~~~~~--~~~~~~~~~~N~~~~~~i~~~i~~~~~~~~~viv~snp~~~~~-----~~~~~~~~~~~ 149 (332)
+++ +|+|||+|+..... ..+..+.+..|+.++.++++++++.+ . .++|++|+.. +.. ..+.+. ....
T Consensus 94 ~~~~~~d~Vih~A~~~~~~~~~~~~~~~~~~nv~~~~~ll~a~~~~~-~-~~~v~~SS~~-vy~~~~~~~~~~E~-~~~~ 169 (346)
T 4egb_A 94 IKERDVQVIVNFAAESHVDRSIENPIPFYDTNVIGTVTLLELVKKYP-H-IKLVQVSTDE-VYGSLGKTGRFTEE-TPLA 169 (346)
T ss_dssp HHHHTCCEEEECCCCC---------CHHHHHHTHHHHHHHHHHHHST-T-SEEEEEEEGG-GGCCCCSSCCBCTT-SCCC
T ss_pred HhhcCCCEEEECCcccchhhhhhCHHHHHHHHHHHHHHHHHHHHhcC-C-CEEEEeCchH-HhCCCCcCCCcCCC-CCCC
Confidence 776 99999999874321 12334578899999999999999875 3 3567666421 100 000111 2233
Q ss_pred CCcEEEeecccHHHHHHHHHHHcCCCCCCeeeeEEEecCC
Q 019990 150 AKNITCLTRLDHNRAMGQISERLKVHVSDVKNVIIWGNHS 189 (332)
Q Consensus 150 ~~~i~~~t~l~~~r~~~~~a~~~~v~~~~v~~~~V~G~hg 189 (332)
|...|+.++...+++...+++..|++...+|...|||+..
T Consensus 170 p~~~Y~~sK~~~E~~~~~~~~~~g~~~~ilRp~~v~G~~~ 209 (346)
T 4egb_A 170 PNSPYSSSKASADMIALAYYKTYQLPVIVTRCSNNYGPYQ 209 (346)
T ss_dssp CCSHHHHHHHHHHHHHHHHHHHHCCCEEEEEECEEESTTC
T ss_pred CCChhHHHHHHHHHHHHHHHHHhCCCEEEEeecceeCcCC
Confidence 4456888999999999999998999999999999999754
|
| >3m2p_A UDP-N-acetylglucosamine 4-epimerase; SGXNY, 11155J, isomerase, structural genomics, PSI-2, protein structure initiative; HET: UDP; 2.95A {Bacillus cereus} | Back alignment and structure |
|---|
Probab=99.45 E-value=1.9e-13 Score=124.45 Aligned_cols=170 Identities=12% Similarity=0.106 Sum_probs=118.5
Q ss_pred CcEEEEEcCCChhHHHHHHHHHhcccCCCCCCeEEEEEecccchhhhhhhHhhhhhhccCCccceEEeCCHHHHhCCCcE
Q 019990 5 PLRVLVTGAAGQIGYALVPMIARGIMLGPDQPVILHMLDIEPAAEALNGVKMELIDAAFPLLKGVVATTDVVEACKDVNI 84 (332)
Q Consensus 5 ~~kI~VtGaaG~IGs~l~~~L~~~~~~~~~~~~~i~l~D~~~~~~~~~~~~~dl~~~~~~~~~~v~~~~~~~~a~~~aDi 84 (332)
+|||+||||+||||++++..|++.+. +|+.+++... ... +... .....|+. ..++.++++++|+
T Consensus 2 ~~~vlVtGatG~iG~~l~~~L~~~g~-------~V~~~~r~~~--~~~-----~~~~-~~~~~Dl~-~~~~~~~~~~~d~ 65 (311)
T 3m2p_A 2 SLKIAVTGGTGFLGQYVVESIKNDGN-------TPIILTRSIG--NKA-----INDY-EYRVSDYT-LEDLINQLNDVDA 65 (311)
T ss_dssp CCEEEEETTTSHHHHHHHHHHHHTTC-------EEEEEESCCC------------CC-EEEECCCC-HHHHHHHTTTCSE
T ss_pred CCEEEEECCCcHHHHHHHHHHHhCCC-------EEEEEeCCCC--ccc-----CCce-EEEEcccc-HHHHHHhhcCCCE
Confidence 47899999999999999999999875 8999998631 111 1111 11234666 5667788999999
Q ss_pred EEEecCCCCCCCCChhHHHhhhHHHHHHHHHHHHhhcCCCcEEEEEeCChhhHH----HHHHHHCCCCCCCcEEEeeccc
Q 019990 85 AVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEKHAAPNCKVLVVANPANTNA----LILKEFAPSIPAKNITCLTRLD 160 (332)
Q Consensus 85 Vi~~ag~~~~~~~~~~~~~~~N~~~~~~i~~~i~~~~~~~~~viv~snp~~~~~----~~~~~~~~~~~~~~i~~~t~l~ 160 (332)
|||+|+..... +..+.+..|+..+.++++++++.+ .. ++|++|+. .+.. ..+.+. ....|...|+.++..
T Consensus 66 Vih~a~~~~~~--~~~~~~~~n~~~~~~ll~a~~~~~-~~-r~v~~SS~-~vyg~~~~~~~~E~-~~~~p~~~Y~~sK~~ 139 (311)
T 3m2p_A 66 VVHLAATRGSQ--GKISEFHDNEILTQNLYDACYENN-IS-NIVYASTI-SAYSDETSLPWNEK-ELPLPDLMYGVSKLA 139 (311)
T ss_dssp EEECCCCCCSS--SCGGGTHHHHHHHHHHHHHHHHTT-CC-EEEEEEEG-GGCCCGGGCSBCTT-SCCCCSSHHHHHHHH
T ss_pred EEEccccCCCC--ChHHHHHHHHHHHHHHHHHHHHcC-CC-EEEEEccH-HHhCCCCCCCCCCC-CCCCCCchhHHHHHH
Confidence 99999875432 334567889999999999999875 32 56666642 1100 000111 223344578889999
Q ss_pred HHHHHHHHHHHcCCCCCCeeeeEEEecCCC--ceeecc
Q 019990 161 HNRAMGQISERLKVHVSDVKNVIIWGNHSS--TQYPDV 196 (332)
Q Consensus 161 ~~r~~~~~a~~~~v~~~~v~~~~V~G~hg~--~~v~~~ 196 (332)
.+++...+++..+++...+|...|||+... ..++.+
T Consensus 140 ~E~~~~~~~~~~g~~~~ilRp~~v~G~~~~~~~~~~~~ 177 (311)
T 3m2p_A 140 CEHIGNIYSRKKGLCIKNLRFAHLYGFNEKNNYMINRF 177 (311)
T ss_dssp HHHHHHHHHHHSCCEEEEEEECEEECSCC--CCHHHHH
T ss_pred HHHHHHHHHHHcCCCEEEEeeCceeCcCCCCCCHHHHH
Confidence 999999999989999999999999998653 344444
|
| >2rh8_A Anthocyanidin reductase; flavonoids, rossmann fold, short chain dehydrogenase/reductase, oxidoreductase; 2.22A {Vitis vinifera} PDB: 3hfs_A | Back alignment and structure |
|---|
Probab=99.44 E-value=9.2e-13 Score=121.19 Aligned_cols=174 Identities=10% Similarity=0.065 Sum_probs=109.1
Q ss_pred CcEEEEEcCCChhHHHHHHHHHhcccCCCCCCeEEEEEecccch-hhhhhhHhhhhhh-cc-CCccceEEeCCHHHHhCC
Q 019990 5 PLRVLVTGAAGQIGYALVPMIARGIMLGPDQPVILHMLDIEPAA-EALNGVKMELIDA-AF-PLLKGVVATTDVVEACKD 81 (332)
Q Consensus 5 ~~kI~VtGaaG~IGs~l~~~L~~~~~~~~~~~~~i~l~D~~~~~-~~~~~~~~dl~~~-~~-~~~~~v~~~~~~~~a~~~ 81 (332)
+++|+||||+||||++++..|++.|+ +|+.++++... .... ...++... .. ....|+....++.+++++
T Consensus 9 ~~~vlVTGatGfIG~~l~~~Ll~~G~-------~V~~~~r~~~~~~~~~-~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~ 80 (338)
T 2rh8_A 9 KKTACVVGGTGFVASLLVKLLLQKGY-------AVNTTVRDPDNQKKVS-HLLELQELGDLKIFRADLTDELSFEAPIAG 80 (338)
T ss_dssp CCEEEEECTTSHHHHHHHHHHHHTTC-------EEEEEESCTTCTTTTH-HHHHHGGGSCEEEEECCTTTSSSSHHHHTT
T ss_pred CCEEEEECCchHHHHHHHHHHHHCCC-------EEEEEEcCcchhhhHH-HHHhcCCCCcEEEEecCCCChHHHHHHHcC
Confidence 47899999999999999999999886 78776654311 0111 11122110 01 112344444566778899
Q ss_pred CcEEEEecCCCCCC-CCChhHHHhhhHHHHHHHHHHHHhhcCCCcEEEEEeCChhhHHHHHHHHCC-------CC-----
Q 019990 82 VNIAVMVGGFPRKE-GMERKDVMSKNVSIYKAQASALEKHAAPNCKVLVVANPANTNALILKEFAP-------SI----- 148 (332)
Q Consensus 82 aDiVi~~ag~~~~~-~~~~~~~~~~N~~~~~~i~~~i~~~~~~~~~viv~snp~~~~~~~~~~~~~-------~~----- 148 (332)
+|+|||+|+..... ..+..++++.|+.++.++++++.+.+ .-.++|++|+....... ..... ..
T Consensus 81 ~D~Vih~A~~~~~~~~~~~~~~~~~nv~gt~~ll~aa~~~~-~v~r~V~~SS~~~~~~~--~~~~~~~~~~E~~~~~~~~ 157 (338)
T 2rh8_A 81 CDFVFHVATPVHFASEDPENDMIKPAIQGVVNVMKACTRAK-SVKRVILTSSAAAVTIN--QLDGTGLVVDEKNWTDIEF 157 (338)
T ss_dssp CSEEEEESSCCCC---------CHHHHHHHHHHHHHHHHCT-TCCEEEEECCHHHHHHH--HHTCSCCCCCTTTTTCC--
T ss_pred CCEEEEeCCccCCCCCCcHHHHHHHHHHHHHHHHHHHHHcC-CcCEEEEEecHHHeecC--CcCCCCcccChhhccchhh
Confidence 99999999854211 11223467889999999999998863 12366766653211111 11000 00
Q ss_pred --C--CCc-EEEeecccHHHHHHHHHHHcCCCCCCeeeeEEEecCC
Q 019990 149 --P--AKN-ITCLTRLDHNRAMGQISERLKVHVSDVKNVIIWGNHS 189 (332)
Q Consensus 149 --~--~~~-i~~~t~l~~~r~~~~~a~~~~v~~~~v~~~~V~G~hg 189 (332)
+ +.. .|+.+|...+++...+++..|++...+|..+|||+..
T Consensus 158 ~~~~~~~~~~Y~~sK~~~E~~~~~~~~~~gi~~~~lrp~~v~Gp~~ 203 (338)
T 2rh8_A 158 LTSAKPPTWGYPASKTLAEKAAWKFAEENNIDLITVIPTLMAGSSL 203 (338)
T ss_dssp -----CCCCCCTTSCCHHHHHHHHHHHHHTCCEEEEEECEEESCCS
T ss_pred ccccCCccchHHHHHHHHHHHHHHHHHHcCCcEEEEeCCceECCCC
Confidence 0 011 4888999999988888888899999999999999853
|
| >3ruf_A WBGU; rossmann fold, UDP-hexose 4-epimerase, isomerase; HET: NAD UDP; 2.00A {Plesiomonas shigelloides} SCOP: c.2.1.2 PDB: 3ru9_A* 3rud_A* 3rue_A* 3rua_A* 3ruh_A* 3ruc_A* 3ru7_A* 3lu1_A* | Back alignment and structure |
|---|
Probab=99.43 E-value=7.9e-14 Score=129.05 Aligned_cols=174 Identities=13% Similarity=0.052 Sum_probs=117.2
Q ss_pred CCCcEEEEEcCCChhHHHHHHHHHhcccCCCCCCeEEEEEecccchhhhhhhHhhhhh-------hcc-CCccceEEeCC
Q 019990 3 KNPLRVLVTGAAGQIGYALVPMIARGIMLGPDQPVILHMLDIEPAAEALNGVKMELID-------AAF-PLLKGVVATTD 74 (332)
Q Consensus 3 ~~~~kI~VtGaaG~IGs~l~~~L~~~~~~~~~~~~~i~l~D~~~~~~~~~~~~~dl~~-------~~~-~~~~~v~~~~~ 74 (332)
.++++|+||||+||||++++..|++.|. +|+.+++.... ......++.. ... ....|+....+
T Consensus 23 ~~~~~vlVtGatG~iG~~l~~~L~~~g~-------~V~~~~r~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~ 93 (351)
T 3ruf_A 23 FSPKTWLITGVAGFIGSNLLEKLLKLNQ-------VVIGLDNFSTG--HQYNLDEVKTLVSTEQWSRFCFIEGDIRDLTT 93 (351)
T ss_dssp HSCCEEEEETTTSHHHHHHHHHHHHTTC-------EEEEEECCSSC--CHHHHHHHHHTSCHHHHTTEEEEECCTTCHHH
T ss_pred CCCCeEEEECCCcHHHHHHHHHHHHCCC-------EEEEEeCCCCC--chhhhhhhhhccccccCCceEEEEccCCCHHH
Confidence 3578999999999999999999999875 89999875421 1111112211 001 11234544455
Q ss_pred HHHHhCCCcEEEEecCCCCCC--CCChhHHHhhhHHHHHHHHHHHHhhcCCCcEEEEEeCChhhHHH----HHHHHCCCC
Q 019990 75 VVEACKDVNIAVMVGGFPRKE--GMERKDVMSKNVSIYKAQASALEKHAAPNCKVLVVANPANTNAL----ILKEFAPSI 148 (332)
Q Consensus 75 ~~~a~~~aDiVi~~ag~~~~~--~~~~~~~~~~N~~~~~~i~~~i~~~~~~~~~viv~snp~~~~~~----~~~~~~~~~ 148 (332)
+.++++++|+|||+|+..... ..+..+.+..|+..+.++++++++.+ .. ++|++|+.. +... .+.+. ...
T Consensus 94 ~~~~~~~~d~Vih~A~~~~~~~~~~~~~~~~~~nv~~~~~ll~a~~~~~-~~-~~v~~SS~~-vyg~~~~~~~~E~-~~~ 169 (351)
T 3ruf_A 94 CEQVMKGVDHVLHQAALGSVPRSIVDPITTNATNITGFLNILHAAKNAQ-VQ-SFTYAASSS-TYGDHPALPKVEE-NIG 169 (351)
T ss_dssp HHHHTTTCSEEEECCCCCCHHHHHHCHHHHHHHHTHHHHHHHHHHHHTT-CS-EEEEEEEGG-GGTTCCCSSBCTT-CCC
T ss_pred HHHHhcCCCEEEECCccCCcchhhhCHHHHHHHHHHHHHHHHHHHHHcC-CC-EEEEEecHH-hcCCCCCCCCccC-CCC
Confidence 677889999999999864211 11234567889999999999999875 32 666666421 1000 00010 112
Q ss_pred CCCcEEEeecccHHHHHHHHHHHcCCCCCCeeeeEEEecCC
Q 019990 149 PAKNITCLTRLDHNRAMGQISERLKVHVSDVKNVIIWGNHS 189 (332)
Q Consensus 149 ~~~~i~~~t~l~~~r~~~~~a~~~~v~~~~v~~~~V~G~hg 189 (332)
.|...|+.++...+++...+++..|++...+|...|||+..
T Consensus 170 ~p~~~Y~~sK~~~E~~~~~~~~~~g~~~~ilRp~~v~G~~~ 210 (351)
T 3ruf_A 170 NPLSPYAVTKYVNEIYAQVYARTYGFKTIGLRYFNVFGRRQ 210 (351)
T ss_dssp CCCSHHHHHHHHHHHHHHHHHHHHCCCCEEEEECSEESTTC
T ss_pred CCCChhHHHHHHHHHHHHHHHHHhCCCEEEEeeCceeCcCC
Confidence 33456888999999999999999999999999999999754
|
| >4id9_A Short-chain dehydrogenase/reductase; putative dehydrogenase, enzyme function initiative, EFI, STR genomics, oxidoreductase; HET: NAD; 1.60A {Agrobacterium fabrum} PDB: 4idg_A* | Back alignment and structure |
|---|
Probab=99.42 E-value=8.9e-14 Score=128.51 Aligned_cols=160 Identities=14% Similarity=0.132 Sum_probs=111.8
Q ss_pred CCcEEEEEcCCChhHHHHHHHHHhcccCCCCCCeEEEEEecccchhhhhhhHhhhhhhccCCccceEEeCCHHHHhCCCc
Q 019990 4 NPLRVLVTGAAGQIGYALVPMIARGIMLGPDQPVILHMLDIEPAAEALNGVKMELIDAAFPLLKGVVATTDVVEACKDVN 83 (332)
Q Consensus 4 ~~~kI~VtGaaG~IGs~l~~~L~~~~~~~~~~~~~i~l~D~~~~~~~~~~~~~dl~~~~~~~~~~v~~~~~~~~a~~~aD 83 (332)
++|+|+||||+||||++++..|++.|. +|+.+|+........ ....|+....++.++++++|
T Consensus 18 ~~~~vlVtGatG~iG~~l~~~L~~~G~-------~V~~~~r~~~~~~~~-----------~~~~Dl~d~~~~~~~~~~~d 79 (347)
T 4id9_A 18 GSHMILVTGSAGRVGRAVVAALRTQGR-------TVRGFDLRPSGTGGE-----------EVVGSLEDGQALSDAIMGVS 79 (347)
T ss_dssp ---CEEEETTTSHHHHHHHHHHHHTTC-------CEEEEESSCCSSCCS-----------EEESCTTCHHHHHHHHTTCS
T ss_pred CCCEEEEECCCChHHHHHHHHHHhCCC-------EEEEEeCCCCCCCcc-----------EEecCcCCHHHHHHHHhCCC
Confidence 468899999999999999999999885 789998864210000 11234444455677889999
Q ss_pred EEEEecCCCCCCCCChhHHHhhhHHHHHHHHHHHHhhcCCCcEEEEEeCChhhHHH------HHHHHCCCCCCCcEEEee
Q 019990 84 IAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEKHAAPNCKVLVVANPANTNAL------ILKEFAPSIPAKNITCLT 157 (332)
Q Consensus 84 iVi~~ag~~~~~~~~~~~~~~~N~~~~~~i~~~i~~~~~~~~~viv~snp~~~~~~------~~~~~~~~~~~~~i~~~t 157 (332)
+|||+|+..........+.+..|+..+.++++++++.+ . .++|++|+. .+... .+.+. ...++...|+.+
T Consensus 80 ~vih~A~~~~~~~~~~~~~~~~nv~~~~~ll~a~~~~~-~-~~~V~~SS~-~vyg~~~~~~~~~~E~-~~~~~~~~Y~~s 155 (347)
T 4id9_A 80 AVLHLGAFMSWAPADRDRMFAVNVEGTRRLLDAASAAG-V-RRFVFASSG-EVYPENRPEFLPVTED-HPLCPNSPYGLT 155 (347)
T ss_dssp EEEECCCCCCSSGGGHHHHHHHHTHHHHHHHHHHHHTT-C-SEEEEEEEG-GGTTTTSCSSSSBCTT-SCCCCCSHHHHH
T ss_pred EEEECCcccCcchhhHHHHHHHHHHHHHHHHHHHHHcC-C-CeEEEECCH-HHhCCCCCCCCCcCCC-CCCCCCChHHHH
Confidence 99999987543322335678899999999999999864 2 266766652 11000 00111 223444578889
Q ss_pred cccHHHHHHHHHHHcCCCCCCeeeeEEE
Q 019990 158 RLDHNRAMGQISERLKVHVSDVKNVIIW 185 (332)
Q Consensus 158 ~l~~~r~~~~~a~~~~v~~~~v~~~~V~ 185 (332)
+...+++...+++..+++...+|...||
T Consensus 156 K~~~E~~~~~~~~~~~~~~~ilRp~~v~ 183 (347)
T 4id9_A 156 KLLGEELVRFHQRSGAMETVILRFSHTQ 183 (347)
T ss_dssp HHHHHHHHHHHHHHSSSEEEEEEECEEE
T ss_pred HHHHHHHHHHHHHhcCCceEEEccceEe
Confidence 9999999999999999999999999999
|
| >2x4g_A Nucleoside-diphosphate-sugar epimerase; isomerase; 2.65A {Pseudomonas aeruginosa} | Back alignment and structure |
|---|
Probab=99.40 E-value=6.2e-13 Score=122.39 Aligned_cols=169 Identities=11% Similarity=0.053 Sum_probs=108.8
Q ss_pred CCcEEEEEcCCChhHHHHHHHHHhcccCCCCCCeEEEEEecccchhhhhhhHhhhhhhcc-CCccceEEeCCHHHHhCCC
Q 019990 4 NPLRVLVTGAAGQIGYALVPMIARGIMLGPDQPVILHMLDIEPAAEALNGVKMELIDAAF-PLLKGVVATTDVVEACKDV 82 (332)
Q Consensus 4 ~~~kI~VtGaaG~IGs~l~~~L~~~~~~~~~~~~~i~l~D~~~~~~~~~~~~~dl~~~~~-~~~~~v~~~~~~~~a~~~a 82 (332)
++|||+||||+||||++++..|++.|. +|++++++.. ... ++.+... ....|+....++.++++++
T Consensus 12 ~~M~ilVtGatG~iG~~l~~~L~~~g~-------~V~~~~r~~~--~~~----~l~~~~~~~~~~Dl~d~~~~~~~~~~~ 78 (342)
T 2x4g_A 12 AHVKYAVLGATGLLGHHAARAIRAAGH-------DLVLIHRPSS--QIQ----RLAYLEPECRVAEMLDHAGLERALRGL 78 (342)
T ss_dssp CCCEEEEESTTSHHHHHHHHHHHHTTC-------EEEEEECTTS--CGG----GGGGGCCEEEECCTTCHHHHHHHTTTC
T ss_pred cCCEEEEECCCcHHHHHHHHHHHHCCC-------EEEEEecChH--hhh----hhccCCeEEEEecCCCHHHHHHHHcCC
Confidence 346999999999999999999998875 8999998542 111 1211111 1123444444566778999
Q ss_pred cEEEEecCCCCCCCCChhHHHhhhHHHHHHHHHHHHhhcCCCcEEEEEeCChhhH--HH--HHHHHCCCCCC----CcEE
Q 019990 83 NIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEKHAAPNCKVLVVANPANTN--AL--ILKEFAPSIPA----KNIT 154 (332)
Q Consensus 83 DiVi~~ag~~~~~~~~~~~~~~~N~~~~~~i~~~i~~~~~~~~~viv~snp~~~~--~~--~~~~~~~~~~~----~~i~ 154 (332)
|+|||+|+.......+..+++..|+..+.++++++.+.+ . .++|++|+..-.- .. ...+. ....| ...|
T Consensus 79 d~vih~a~~~~~~~~~~~~~~~~n~~~~~~l~~a~~~~~-~-~~~v~~SS~~~~~~~~~~~~~~E~-~~~~p~~~~~~~Y 155 (342)
T 2x4g_A 79 DGVIFSAGYYPSRPRRWQEEVASALGQTNPFYAACLQAR-V-PRILYVGSAYAMPRHPQGLPGHEG-LFYDSLPSGKSSY 155 (342)
T ss_dssp SEEEEC------------CHHHHHHHHHHHHHHHHHHHT-C-SCEEEECCGGGSCCCTTSSCBCTT-CCCSSCCTTSCHH
T ss_pred CEEEECCccCcCCCCCHHHHHHHHHHHHHHHHHHHHHcC-C-CeEEEECCHHhhCcCCCCCCCCCC-CCCCccccccChH
Confidence 999999986432222334578899999999999999875 2 3667776532100 00 00111 12223 4467
Q ss_pred EeecccHHHHHHHHHHHcCCCCCCeeeeEEEecCC
Q 019990 155 CLTRLDHNRAMGQISERLKVHVSDVKNVIIWGNHS 189 (332)
Q Consensus 155 ~~t~l~~~r~~~~~a~~~~v~~~~v~~~~V~G~hg 189 (332)
+.+|...+++...+++. |++...+|...|||+..
T Consensus 156 ~~sK~~~e~~~~~~~~~-g~~~~ilrp~~v~g~~~ 189 (342)
T 2x4g_A 156 VLCKWALDEQAREQARN-GLPVVIGIPGMVLGELD 189 (342)
T ss_dssp HHHHHHHHHHHHHHHHT-TCCEEEEEECEEECSCC
T ss_pred HHHHHHHHHHHHHHhhc-CCcEEEEeCCceECCCC
Confidence 88899999988888877 99999999999999754
|
| >3sxp_A ADP-L-glycero-D-mannoheptose-6-epimerase; rossman fold, NAD binding, isomerase; HET: NAD; 2.55A {Helicobacter pylori} | Back alignment and structure |
|---|
Probab=99.40 E-value=3.5e-13 Score=125.43 Aligned_cols=173 Identities=13% Similarity=0.087 Sum_probs=110.5
Q ss_pred CCCcEEEEEcCCChhHHHHHHHHHh--cccCCCCCCeEEEEEecccchhhhh-------hhHhhhhhhcc-CCccceEEe
Q 019990 3 KNPLRVLVTGAAGQIGYALVPMIAR--GIMLGPDQPVILHMLDIEPAAEALN-------GVKMELIDAAF-PLLKGVVAT 72 (332)
Q Consensus 3 ~~~~kI~VtGaaG~IGs~l~~~L~~--~~~~~~~~~~~i~l~D~~~~~~~~~-------~~~~dl~~~~~-~~~~~v~~~ 72 (332)
.++|+|+||||+||||++++..|++ .|. +|+++|+........ .....+..... ....|+...
T Consensus 8 ~~~~~vlVTGatG~IG~~l~~~L~~~~~g~-------~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~ 80 (362)
T 3sxp_A 8 LENQTILITGGAGFVGSNLAFHFQENHPKA-------KVVVLDKFRSNTLFSNNRPSSLGHFKNLIGFKGEVIAADINNP 80 (362)
T ss_dssp CTTCEEEEETTTSHHHHHHHHHHHHHCTTS-------EEEEEECCCCC-------CCCCCCGGGGTTCCSEEEECCTTCH
T ss_pred cCCCEEEEECCCCHHHHHHHHHHHhhCCCC-------eEEEEECCCccccccccchhhhhhhhhccccCceEEECCCCCH
Confidence 4568999999999999999999998 675 899999754210000 00011111000 112344444
Q ss_pred CCHHHH-hCCCcEEEEecCCCCCCCCChhHHHhhhHHHHHHHHHHHHhhcCCCcEEEEEeCChhhHHH---HHHHHCCCC
Q 019990 73 TDVVEA-CKDVNIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEKHAAPNCKVLVVANPANTNAL---ILKEFAPSI 148 (332)
Q Consensus 73 ~~~~~a-~~~aDiVi~~ag~~~~~~~~~~~~~~~N~~~~~~i~~~i~~~~~~~~~viv~snp~~~~~~---~~~~~~~~~ 148 (332)
.++.++ ..++|+|||+||.......+....+..|+..+.++++++++.+ +++|++|+ ..+... .+.+. ...
T Consensus 81 ~~~~~~~~~~~D~vih~A~~~~~~~~~~~~~~~~Nv~gt~~ll~aa~~~~---~~~V~~SS-~~vyg~~~~~~~E~-~~~ 155 (362)
T 3sxp_A 81 LDLRRLEKLHFDYLFHQAAVSDTTMLNQELVMKTNYQAFLNLLEIARSKK---AKVIYASS-AGVYGNTKAPNVVG-KNE 155 (362)
T ss_dssp HHHHHHTTSCCSEEEECCCCCGGGCCCHHHHHHHHTHHHHHHHHHHHHTT---CEEEEEEE-GGGGCSCCSSBCTT-SCC
T ss_pred HHHHHhhccCCCEEEECCccCCccccCHHHHHHHHHHHHHHHHHHHHHcC---CcEEEeCc-HHHhCCCCCCCCCC-CCC
Confidence 455555 6799999999996543334456678999999999999998864 35666664 211000 00110 122
Q ss_pred CCCcEEEeecccHHHHHHHHHHHcCCCCCCeeeeEEEecCC
Q 019990 149 PAKNITCLTRLDHNRAMGQISERLKVHVSDVKNVIIWGNHS 189 (332)
Q Consensus 149 ~~~~i~~~t~l~~~r~~~~~a~~~~v~~~~v~~~~V~G~hg 189 (332)
.|...|+.+|...+++...+++. ++...+|..+|||+..
T Consensus 156 ~p~~~Y~~sK~~~E~~~~~~~~~--~~~~~lR~~~v~Gp~~ 194 (362)
T 3sxp_A 156 SPENVYGFSKLCMDEFVLSHSND--NVQVGLRYFNVYGPRE 194 (362)
T ss_dssp CCSSHHHHHHHHHHHHHHHTTTT--SCEEEEEECSEESTTC
T ss_pred CCCChhHHHHHHHHHHHHHHhcc--CCEEEEEeCceeCcCC
Confidence 33446888898888887776655 7778899878899754
|
| >3enk_A UDP-glucose 4-epimerase; seattle structural genomics center for infectious disease, ssgcid, isomerase, NAD; HET: NAD GUD; 1.90A {Burkholderia pseudomallei 1710B} SCOP: c.2.1.0 | Back alignment and structure |
|---|
Probab=99.38 E-value=6.5e-13 Score=122.28 Aligned_cols=174 Identities=12% Similarity=0.063 Sum_probs=115.8
Q ss_pred CCCcEEEEEcCCChhHHHHHHHHHhcccCCCCCCeEEEEEecccchhhhhhhHhhhhhh---cc-CCccceEEeCCHHHH
Q 019990 3 KNPLRVLVTGAAGQIGYALVPMIARGIMLGPDQPVILHMLDIEPAAEALNGVKMELIDA---AF-PLLKGVVATTDVVEA 78 (332)
Q Consensus 3 ~~~~kI~VtGaaG~IGs~l~~~L~~~~~~~~~~~~~i~l~D~~~~~~~~~~~~~dl~~~---~~-~~~~~v~~~~~~~~a 78 (332)
..+|+|+||||+||||++++..|++.|. +|+++|++.. .......++... .. ....|+....++.++
T Consensus 3 ~~~~~vlVTGatG~iG~~l~~~L~~~G~-------~V~~~~r~~~--~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~ 73 (341)
T 3enk_A 3 STKGTILVTGGAGYIGSHTAVELLAHGY-------DVVIADNLVN--SKREAIARIEKITGKTPAFHETDVSDERALARI 73 (341)
T ss_dssp CSSCEEEEETTTSHHHHHHHHHHHHTTC-------EEEEECCCSS--SCTHHHHHHHHHHSCCCEEECCCTTCHHHHHHH
T ss_pred CCCcEEEEecCCcHHHHHHHHHHHHCCC-------cEEEEecCCc--chHHHHHHHHhhcCCCceEEEeecCCHHHHHHH
Confidence 4567999999999999999999999886 8999987542 122111222111 11 112455444556666
Q ss_pred hC--CCcEEEEecCCCCCC--CCChhHHHhhhHHHHHHHHHHHHhhcCCCcEEEEEeCChhhHH----HHHHHHCCCCCC
Q 019990 79 CK--DVNIAVMVGGFPRKE--GMERKDVMSKNVSIYKAQASALEKHAAPNCKVLVVANPANTNA----LILKEFAPSIPA 150 (332)
Q Consensus 79 ~~--~aDiVi~~ag~~~~~--~~~~~~~~~~N~~~~~~i~~~i~~~~~~~~~viv~snp~~~~~----~~~~~~~~~~~~ 150 (332)
++ ++|+|||+||..... .....+.+..|+..+.++++++++.+ . .++|++|+.. ... ..+.+. ...++
T Consensus 74 ~~~~~~d~vih~A~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~-~-~~iv~~SS~~-~~g~~~~~~~~e~-~~~~~ 149 (341)
T 3enk_A 74 FDAHPITAAIHFAALKAVGESVAKPIEYYRNNLDSLLSLLRVMRERA-V-KRIVFSSSAT-VYGVPERSPIDET-FPLSA 149 (341)
T ss_dssp HHHSCCCEEEECCCCCCHHHHHHCHHHHHHHHHHHHHHHHHHHHHTT-C-CEEEEEEEGG-GBCSCSSSSBCTT-SCCBC
T ss_pred HhccCCcEEEECccccccCccccChHHHHHHHHHHHHHHHHHHHhCC-C-CEEEEEecce-EecCCCCCCCCCC-CCCCC
Confidence 76 899999999874311 11223567889999999999999874 2 3666666421 100 000110 12334
Q ss_pred CcEEEeecccHHHHHHHHHHHcC-CCCCCeeeeEEEecCC
Q 019990 151 KNITCLTRLDHNRAMGQISERLK-VHVSDVKNVIIWGNHS 189 (332)
Q Consensus 151 ~~i~~~t~l~~~r~~~~~a~~~~-v~~~~v~~~~V~G~hg 189 (332)
...|+.+|...+++...+++.++ ++...+|..+|||++.
T Consensus 150 ~~~Y~~sK~~~e~~~~~~~~~~~~~~~~~lRp~~v~G~~~ 189 (341)
T 3enk_A 150 TNPYGQTKLMAEQILRDVEAADPSWRVATLRYFNPVGAHE 189 (341)
T ss_dssp SSHHHHHHHHHHHHHHHHHHHCTTCEEEEEEECEEECCCT
T ss_pred CChhHHHHHHHHHHHHHHhhcCCCceEEEEeeccccCCcc
Confidence 45788999999999988888886 8889999999999853
|
| >1oc2_A DTDP-glucose 4,6-dehydratase; lyase, NADH, rhamnose; HET: TDX NAD; 1.5A {Streptococcus suis} SCOP: c.2.1.2 PDB: 1ker_A* 1ket_A* 1kep_A* | Back alignment and structure |
|---|
Probab=99.38 E-value=4.7e-13 Score=123.56 Aligned_cols=175 Identities=12% Similarity=0.048 Sum_probs=114.5
Q ss_pred CCCCCcEEEEEcCCChhHHHHHHHHHhc--ccCCCCCCeEEEEEecccchhhhhhhHhhhhhhcc-CCccceEEeCCHHH
Q 019990 1 MAKNPLRVLVTGAAGQIGYALVPMIARG--IMLGPDQPVILHMLDIEPAAEALNGVKMELIDAAF-PLLKGVVATTDVVE 77 (332)
Q Consensus 1 m~~~~~kI~VtGaaG~IGs~l~~~L~~~--~~~~~~~~~~i~l~D~~~~~~~~~~~~~dl~~~~~-~~~~~v~~~~~~~~ 77 (332)
|+ .||+|+||||+||||++++..|++. +. +|+++|+........ ...++..... ....|+....++.+
T Consensus 1 Ms-~m~~vlVTGatG~iG~~l~~~L~~~~~g~-------~V~~~~r~~~~~~~~-~~~~~~~~~~~~~~~Dl~d~~~~~~ 71 (348)
T 1oc2_A 1 MS-QFKNIIVTGGAGFIGSNFVHYVYNNHPDV-------HVTVLDKLTYAGNKA-NLEAILGDRVELVVGDIADAELVDK 71 (348)
T ss_dssp ---CCSEEEEETTTSHHHHHHHHHHHHHCTTC-------EEEEEECCCTTCCGG-GTGGGCSSSEEEEECCTTCHHHHHH
T ss_pred CC-cCcEEEEeCCccHHHHHHHHHHHHhCCCC-------EEEEEeCCCCCCChh-HHhhhccCCeEEEECCCCCHHHHHH
Confidence 53 4689999999999999999999987 54 899998753110000 1111111000 11234444445667
Q ss_pred HhCCCcEEEEecCCCCCC--CCChhHHHhhhHHHHHHHHHHHHhhcCCCcEEEEEeCChhhHH----------------H
Q 019990 78 ACKDVNIAVMVGGFPRKE--GMERKDVMSKNVSIYKAQASALEKHAAPNCKVLVVANPANTNA----------------L 139 (332)
Q Consensus 78 a~~~aDiVi~~ag~~~~~--~~~~~~~~~~N~~~~~~i~~~i~~~~~~~~~viv~snp~~~~~----------------~ 139 (332)
+++++|+|||+||..... ..+..+.+..|+..+.++++++.+.+ +++|++|+.. +.. .
T Consensus 72 ~~~~~d~vih~A~~~~~~~~~~~~~~~~~~Nv~g~~~l~~a~~~~~---~~~v~~SS~~-vyg~~~~~~~~~~~~~~~~~ 147 (348)
T 1oc2_A 72 LAAKADAIVHYAAESHNDNSLNDPSPFIHTNFIGTYTLLEAARKYD---IRFHHVSTDE-VYGDLPLREDLPGHGEGPGE 147 (348)
T ss_dssp HHTTCSEEEECCSCCCHHHHHHCCHHHHHHHTHHHHHHHHHHHHHT---CEEEEEEEGG-GGCCBCCGGGSTTTTCSTTS
T ss_pred HhhcCCEEEECCcccCccchhhCHHHHHHHHHHHHHHHHHHHHHhC---CeEEEecccc-eeCCCcccccccccccccCC
Confidence 789999999999865310 01224577889999999999999874 3777766421 100 0
Q ss_pred HHHHHCCCCCCCcEEEeecccHHHHHHHHHHHcCCCCCCeeeeEEEecCC
Q 019990 140 ILKEFAPSIPAKNITCLTRLDHNRAMGQISERLKVHVSDVKNVIIWGNHS 189 (332)
Q Consensus 140 ~~~~~~~~~~~~~i~~~t~l~~~r~~~~~a~~~~v~~~~v~~~~V~G~hg 189 (332)
.+.+. ...++...|+.+|...+++...+++.+|++...+|...|||+..
T Consensus 148 ~~~E~-~~~~~~~~Y~~sK~~~e~~~~~~~~~~gi~~~ilrp~~v~G~~~ 196 (348)
T 1oc2_A 148 KFTAE-TNYNPSSPYSSTKAASDLIVKAWVRSFGVKATISNCSNNYGPYQ 196 (348)
T ss_dssp SBCTT-SCCCCCSHHHHHHHHHHHHHHHHHHHHCCEEEEEEECCEESTTC
T ss_pred CcCCC-CCCCCCCccHHHHHHHHHHHHHHHHHhCCCEEEEeeceeeCCCC
Confidence 00110 12334456888999999998888888999999999999999754
|
| >3dhn_A NAD-dependent epimerase/dehydratase; reductase, PF01370, Q89Z24_bactn, NESG, BTR310, structural genomics, PSI-2; 2.00A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=99.38 E-value=4.6e-14 Score=122.55 Aligned_cols=167 Identities=14% Similarity=0.121 Sum_probs=111.3
Q ss_pred CCCCCcEEEEEcCCChhHHHHHHHHHhcccCCCCCCeEEEEEecccchhhhhhhHhhhhhhccCCccceEEeCCHHHHhC
Q 019990 1 MAKNPLRVLVTGAAGQIGYALVPMIARGIMLGPDQPVILHMLDIEPAAEALNGVKMELIDAAFPLLKGVVATTDVVEACK 80 (332)
Q Consensus 1 m~~~~~kI~VtGaaG~IGs~l~~~L~~~~~~~~~~~~~i~l~D~~~~~~~~~~~~~dl~~~~~~~~~~v~~~~~~~~a~~ 80 (332)
|+ +||||+||||+||||++++..|++.+. +|++++++.. .+.. +.........|+....++.++++
T Consensus 1 M~-~m~~ilItGatG~iG~~l~~~L~~~g~-------~V~~~~r~~~--~~~~----~~~~~~~~~~Dl~d~~~~~~~~~ 66 (227)
T 3dhn_A 1 ME-KVKKIVLIGASGFVGSALLNEALNRGF-------EVTAVVRHPE--KIKI----ENEHLKVKKADVSSLDEVCEVCK 66 (227)
T ss_dssp ---CCCEEEEETCCHHHHHHHHHHHHTTTC-------EEEEECSCGG--GCCC----CCTTEEEECCCTTCHHHHHHHHT
T ss_pred CC-CCCEEEEEcCCchHHHHHHHHHHHCCC-------EEEEEEcCcc--cchh----ccCceEEEEecCCCHHHHHHHhc
Confidence 63 478999999999999999999999875 8999998642 1111 11100112245554556778899
Q ss_pred CCcEEEEecCCCCCCCCChhHHHhhhHHHHHHHHHHHHhhcCCCcEEEEEeCChhhH---HHHHHHHCCCCCCCcEEEee
Q 019990 81 DVNIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEKHAAPNCKVLVVANPANTN---ALILKEFAPSIPAKNITCLT 157 (332)
Q Consensus 81 ~aDiVi~~ag~~~~~~~~~~~~~~~N~~~~~~i~~~i~~~~~~~~~viv~snp~~~~---~~~~~~~~~~~~~~~i~~~t 157 (332)
++|+|||+||.... ..+++..|+....++++++++.+ .. ++|++|+..... ...... ....|...|+.+
T Consensus 67 ~~d~vi~~a~~~~~----~~~~~~~n~~~~~~l~~~~~~~~-~~-~~v~~Ss~~~~~~~~~~~~~~--~~~~p~~~Y~~s 138 (227)
T 3dhn_A 67 GADAVISAFNPGWN----NPDIYDETIKVYLTIIDGVKKAG-VN-RFLMVGGAGSLFIAPGLRLMD--SGEVPENILPGV 138 (227)
T ss_dssp TCSEEEECCCC----------CCSHHHHHHHHHHHHHHHTT-CS-EEEEECCSTTSEEETTEEGGG--TTCSCGGGHHHH
T ss_pred CCCEEEEeCcCCCC----ChhHHHHHHHHHHHHHHHHHHhC-CC-EEEEeCChhhccCCCCCcccc--CCcchHHHHHHH
Confidence 99999999986422 12367789999999999999875 32 667666422100 000001 123344567888
Q ss_pred cccHHHHHHHHHHHcCCCCCCeeeeEEEecCC
Q 019990 158 RLDHNRAMGQISERLKVHVSDVKNVIIWGNHS 189 (332)
Q Consensus 158 ~l~~~r~~~~~a~~~~v~~~~v~~~~V~G~hg 189 (332)
+...+++...+++..+++...+|+..|||+..
T Consensus 139 K~~~e~~~~~~~~~~~~~~~ilrp~~v~g~~~ 170 (227)
T 3dhn_A 139 KALGEFYLNFLMKEKEIDWVFFSPAADMRPGV 170 (227)
T ss_dssp HHHHHHHHHTGGGCCSSEEEEEECCSEEESCC
T ss_pred HHHHHHHHHHHhhccCccEEEEeCCcccCCCc
Confidence 88888888888878899999999988899743
|
| >2c5a_A GDP-mannose-3', 5'-epimerase; short chain dehydratase/reductase, GDP-gulose, GDP-galactose, keto intermediate, vitamin C, SDR; HET: GDC NAD BTB; 1.4A {Arabidopsis thaliana} SCOP: c.2.1.2 PDB: 2c59_A* 2c54_A* 2c5e_A* | Back alignment and structure |
|---|
Probab=99.38 E-value=9.7e-13 Score=123.35 Aligned_cols=173 Identities=12% Similarity=0.028 Sum_probs=116.0
Q ss_pred CCCCCcEEEEEcCCChhHHHHHHHHHhcccCCCCCCeEEEEEecccchhhhhhhHhhhhhhcc-CCccceEEeCCHHHHh
Q 019990 1 MAKNPLRVLVTGAAGQIGYALVPMIARGIMLGPDQPVILHMLDIEPAAEALNGVKMELIDAAF-PLLKGVVATTDVVEAC 79 (332)
Q Consensus 1 m~~~~~kI~VtGaaG~IGs~l~~~L~~~~~~~~~~~~~i~l~D~~~~~~~~~~~~~dl~~~~~-~~~~~v~~~~~~~~a~ 79 (332)
|+.+||+|+||||+||||++++..|++.+. +|++++++... ... +..... ....|+....++.+++
T Consensus 25 ~~~~~~~vlVtGatG~iG~~l~~~L~~~g~-------~V~~~~r~~~~--~~~----~~~~~v~~~~~Dl~d~~~~~~~~ 91 (379)
T 2c5a_A 25 WPSENLKISITGAGGFIASHIARRLKHEGH-------YVIASDWKKNE--HMT----EDMFCDEFHLVDLRVMENCLKVT 91 (379)
T ss_dssp CTTSCCEEEEETTTSHHHHHHHHHHHHTTC-------EEEEEESSCCS--SSC----GGGTCSEEEECCTTSHHHHHHHH
T ss_pred ccccCCeEEEECCccHHHHHHHHHHHHCCC-------eEEEEECCCcc--chh----hccCCceEEECCCCCHHHHHHHh
Confidence 344678999999999999999999998875 89999876421 110 000000 1123444344566778
Q ss_pred CCCcEEEEecCCCCCC---CCChhHHHhhhHHHHHHHHHHHHhhcCCCcEEEEEeCChhhHHH---------HHHHHC-C
Q 019990 80 KDVNIAVMVGGFPRKE---GMERKDVMSKNVSIYKAQASALEKHAAPNCKVLVVANPANTNAL---------ILKEFA-P 146 (332)
Q Consensus 80 ~~aDiVi~~ag~~~~~---~~~~~~~~~~N~~~~~~i~~~i~~~~~~~~~viv~snp~~~~~~---------~~~~~~-~ 146 (332)
+++|+|||+|+..... ..+..+.+..|+..+.++++++++.+ . .++|++|+.. .... .+.+.. .
T Consensus 92 ~~~d~Vih~A~~~~~~~~~~~~~~~~~~~Nv~g~~~ll~a~~~~~-~-~~~V~~SS~~-v~~~~~~~~~~~~~~~E~~~~ 168 (379)
T 2c5a_A 92 EGVDHVFNLAADMGGMGFIQSNHSVIMYNNTMISFNMIEAARING-I-KRFFYASSAC-IYPEFKQLETTNVSLKESDAW 168 (379)
T ss_dssp TTCSEEEECCCCCCCHHHHTTCHHHHHHHHHHHHHHHHHHHHHTT-C-SEEEEEEEGG-GSCGGGSSSSSSCEECGGGGS
T ss_pred CCCCEEEECceecCcccccccCHHHHHHHHHHHHHHHHHHHHHcC-C-CEEEEEeehh-eeCCCCCCCccCCCcCcccCC
Confidence 9999999999864321 23345678889999999999998864 2 2667666531 1000 000100 0
Q ss_pred CCCCCcEEEeecccHHHHHHHHHHHcCCCCCCeeeeEEEecCC
Q 019990 147 SIPAKNITCLTRLDHNRAMGQISERLKVHVSDVKNVIIWGNHS 189 (332)
Q Consensus 147 ~~~~~~i~~~t~l~~~r~~~~~a~~~~v~~~~v~~~~V~G~hg 189 (332)
..++...|+.++...+++...+++..|++...+|...|||+..
T Consensus 169 ~~~~~~~Y~~sK~~~E~~~~~~~~~~gi~~~ilrp~~v~G~~~ 211 (379)
T 2c5a_A 169 PAEPQDAFGLEKLATEELCKHYNKDFGIECRIGRFHNIYGPFG 211 (379)
T ss_dssp SBCCSSHHHHHHHHHHHHHHHHHHHHCCEEEEEEECCEECTTS
T ss_pred CCCCCChhHHHHHHHHHHHHHHHHHHCCCEEEEEeCceeCcCC
Confidence 1233446888999999998888888899999999989999754
|
| >3ehe_A UDP-glucose 4-epimerase (GALE-1); PSI-II, NYSGXRC, ST genomics, protein structure initiative, NEW YORK SGX resear for structural genomics; HET: NAD; 1.87A {Archaeoglobus fulgidus} SCOP: c.2.1.0 | Back alignment and structure |
|---|
Probab=99.35 E-value=1.5e-12 Score=118.47 Aligned_cols=167 Identities=14% Similarity=0.120 Sum_probs=110.5
Q ss_pred CcEEEEEcCCChhHHHHHHHHHhcccCCCCCCeEEEEEecccchhhhhhhHhhhhhhccCCccceEEeCCHHHHhCCCcE
Q 019990 5 PLRVLVTGAAGQIGYALVPMIARGIMLGPDQPVILHMLDIEPAAEALNGVKMELIDAAFPLLKGVVATTDVVEACKDVNI 84 (332)
Q Consensus 5 ~~kI~VtGaaG~IGs~l~~~L~~~~~~~~~~~~~i~l~D~~~~~~~~~~~~~dl~~~~~~~~~~v~~~~~~~~a~~~aDi 84 (332)
|++|+||||+||||++++..|++.|. .+.+.+.... ... .+.........|+.. .++.++++++|+
T Consensus 1 M~~vlVTGatG~iG~~l~~~L~~~g~-------~v~~~~~~~~--~~~----~~~~~~~~~~~Dl~~-~~~~~~~~~~d~ 66 (313)
T 3ehe_A 1 MSLIVVTGGAGFIGSHVVDKLSESNE-------IVVIDNLSSG--NEE----FVNEAARLVKADLAA-DDIKDYLKGAEE 66 (313)
T ss_dssp --CEEEETTTSHHHHHHHHHHTTTSC-------EEEECCCSSC--CGG----GSCTTEEEECCCTTT-SCCHHHHTTCSE
T ss_pred CCEEEEECCCchHHHHHHHHHHhCCC-------EEEEEcCCCC--Chh----hcCCCcEEEECcCCh-HHHHHHhcCCCE
Confidence 46899999999999999999998773 3444333211 111 011110112234544 566778899999
Q ss_pred EEEecCCCCC--CCCChhHHHhhhHHHHHHHHHHHHhhcCCCcEEEEEeCChhhHHH----HHHHHCCCCCCCcEEEeec
Q 019990 85 AVMVGGFPRK--EGMERKDVMSKNVSIYKAQASALEKHAAPNCKVLVVANPANTNAL----ILKEFAPSIPAKNITCLTR 158 (332)
Q Consensus 85 Vi~~ag~~~~--~~~~~~~~~~~N~~~~~~i~~~i~~~~~~~~~viv~snp~~~~~~----~~~~~~~~~~~~~i~~~t~ 158 (332)
|||+|+.+.. ........++.|+..+.++++++++.+ . .++|++|+.. +... ...+. ...++...|+.+|
T Consensus 67 vih~a~~~~~~~~~~~~~~~~~~nv~~~~~l~~~~~~~~-~-~~iv~~SS~~-vyg~~~~~~~~E~-~~~~~~~~Y~~sK 142 (313)
T 3ehe_A 67 VWHIAANPDVRIGAENPDEIYRNNVLATYRLLEAMRKAG-V-SRIVFTSTST-VYGEAKVIPTPED-YPTHPISLYGASK 142 (313)
T ss_dssp EEECCCCCCCC-CCCCHHHHHHHHHHHHHHHHHHHHHHT-C-CEEEEECCGG-GGCSCSSSSBCTT-SCCCCCSHHHHHH
T ss_pred EEECCCCCChhhhhhCHHHHHHHHHHHHHHHHHHHHHcC-C-CeEEEeCchH-HhCcCCCCCCCCC-CCCCCCCHHHHHH
Confidence 9999986432 123345678899999999999999875 2 3667777521 1000 00010 1233445688899
Q ss_pred ccHHHHHHHHHHHcCCCCCCeeeeEEEecCC
Q 019990 159 LDHNRAMGQISERLKVHVSDVKNVIIWGNHS 189 (332)
Q Consensus 159 l~~~r~~~~~a~~~~v~~~~v~~~~V~G~hg 189 (332)
...+++...+++.+|++...+|...|||+..
T Consensus 143 ~~~e~~~~~~~~~~g~~~~ilRp~~v~G~~~ 173 (313)
T 3ehe_A 143 LACEALIESYCHTFDMQAWIYRFANVIGRRS 173 (313)
T ss_dssp HHHHHHHHHHHHHTTCEEEEEECSCEESTTC
T ss_pred HHHHHHHHHHHHhcCCCEEEEeeccccCcCC
Confidence 9999999999999999999999999999854
|
| >3rft_A Uronate dehydrogenase; apoenzyme, rossmann fold, NAD binding, oxidoreductase; 1.90A {Agrobacterium tumefaciens} PDB: 3rfv_A* 3rfx_A* | Back alignment and structure |
|---|
Probab=99.34 E-value=4.4e-13 Score=119.65 Aligned_cols=163 Identities=15% Similarity=0.115 Sum_probs=112.8
Q ss_pred CcEEEEEcCCChhHHHHHHHHHhcccCCCCCCeEEEEEecccchhhhhhhHhhhhhhccCCccceEEeCCHHHHhCCCcE
Q 019990 5 PLRVLVTGAAGQIGYALVPMIARGIMLGPDQPVILHMLDIEPAAEALNGVKMELIDAAFPLLKGVVATTDVVEACKDVNI 84 (332)
Q Consensus 5 ~~kI~VtGaaG~IGs~l~~~L~~~~~~~~~~~~~i~l~D~~~~~~~~~~~~~dl~~~~~~~~~~v~~~~~~~~a~~~aDi 84 (332)
+++|+||||+|+||++++..|++.+. +|++.|++... ..+ ........|+....++.++++++|+
T Consensus 3 ~k~vlVTGasg~IG~~la~~L~~~G~-------~V~~~~r~~~~--~~~------~~~~~~~~Dl~d~~~~~~~~~~~D~ 67 (267)
T 3rft_A 3 MKRLLVTGAAGQLGRVMRERLAPMAE-------ILRLADLSPLD--PAG------PNEECVQCDLADANAVNAMVAGCDG 67 (267)
T ss_dssp EEEEEEESTTSHHHHHHHHHTGGGEE-------EEEEEESSCCC--CCC------TTEEEEECCTTCHHHHHHHHTTCSE
T ss_pred CCEEEEECCCCHHHHHHHHHHHhcCC-------EEEEEecCCcc--ccC------CCCEEEEcCCCCHHHHHHHHcCCCE
Confidence 56899999999999999999998875 89999986421 110 0001112345444566777899999
Q ss_pred EEEecCCCCCCCCChhHHHhhhHHHHHHHHHHHHhhcCCCcEEEEEeCChhhHH----HHHHHHCCCCCCCcEEEeeccc
Q 019990 85 AVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEKHAAPNCKVLVVANPANTNA----LILKEFAPSIPAKNITCLTRLD 160 (332)
Q Consensus 85 Vi~~ag~~~~~~~~~~~~~~~N~~~~~~i~~~i~~~~~~~~~viv~snp~~~~~----~~~~~~~~~~~~~~i~~~t~l~ 160 (332)
|||+||... ..+....+..|+..+..+++++++.+ ..++|++|+..-.-. ..+.+. ...++...|+.+|..
T Consensus 68 vi~~Ag~~~--~~~~~~~~~~N~~g~~~l~~a~~~~~--~~~iv~~SS~~~~g~~~~~~~~~e~-~~~~~~~~Y~~sK~~ 142 (267)
T 3rft_A 68 IVHLGGISV--EKPFEQILQGNIIGLYNLYEAARAHG--QPRIVFASSNHTIGYYPQTERLGPD-VPARPDGLYGVSKCF 142 (267)
T ss_dssp EEECCSCCS--CCCHHHHHHHHTHHHHHHHHHHHHTT--CCEEEEEEEGGGGTTSBTTSCBCTT-SCCCCCSHHHHHHHH
T ss_pred EEECCCCcC--cCCHHHHHHHHHHHHHHHHHHHHHcC--CCEEEEEcchHHhCCCCCCCCCCCC-CCCCCCChHHHHHHH
Confidence 999999843 23345678999999999999998874 346676664221100 000010 223444578899999
Q ss_pred HHHHHHHHHHHcCCCCCCeeeeEEEec
Q 019990 161 HNRAMGQISERLKVHVSDVKNVIIWGN 187 (332)
Q Consensus 161 ~~r~~~~~a~~~~v~~~~v~~~~V~G~ 187 (332)
.+.+...+++.++++...+|...|+|+
T Consensus 143 ~e~~~~~~a~~~g~~~~~vr~~~v~~~ 169 (267)
T 3rft_A 143 GENLARMYFDKFGQETALVRIGSCTPE 169 (267)
T ss_dssp HHHHHHHHHHHHCCCEEEEEECBCSSS
T ss_pred HHHHHHHHHHHhCCeEEEEEeecccCC
Confidence 999999999999998888887666665
|
| >3ko8_A NAD-dependent epimerase/dehydratase; isomerase, UDP-galactose 4-epimerase; HET: NAD; 1.80A {Pyrobaculum calidifontis} SCOP: c.2.1.0 PDB: 3icp_A* 3aw9_A* | Back alignment and structure |
|---|
Probab=99.34 E-value=2.9e-12 Score=116.40 Aligned_cols=165 Identities=13% Similarity=0.081 Sum_probs=111.6
Q ss_pred cEEEEEcCCChhHHHHHHHHHhcccCCCCCCeEEEEEecccchhhhhhhHhhhhhhcc-CCccceEEeCCHHHHhCCCcE
Q 019990 6 LRVLVTGAAGQIGYALVPMIARGIMLGPDQPVILHMLDIEPAAEALNGVKMELIDAAF-PLLKGVVATTDVVEACKDVNI 84 (332)
Q Consensus 6 ~kI~VtGaaG~IGs~l~~~L~~~~~~~~~~~~~i~l~D~~~~~~~~~~~~~dl~~~~~-~~~~~v~~~~~~~~a~~~aDi 84 (332)
|||+||||+||||++++..|++.|. +|+.+|+.... ... ...... ....|+.... +.+++++ |+
T Consensus 1 m~vlVtGatG~iG~~l~~~L~~~g~-------~V~~~~r~~~~--~~~----~~~~~~~~~~~Dl~d~~-~~~~~~~-d~ 65 (312)
T 3ko8_A 1 MRIVVTGGAGFIGSHLVDKLVELGY-------EVVVVDNLSSG--RRE----FVNPSAELHVRDLKDYS-WGAGIKG-DV 65 (312)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTC-------EEEEECCCSSC--CGG----GSCTTSEEECCCTTSTT-TTTTCCC-SE
T ss_pred CEEEEECCCChHHHHHHHHHHhCCC-------EEEEEeCCCCC--chh----hcCCCceEEECccccHH-HHhhcCC-CE
Confidence 5899999999999999999999875 89999875421 110 101100 1123443333 5556666 99
Q ss_pred EEEecCCCCCC--CCChhHHHhhhHHHHHHHHHHHHhhcCCCcEEEEEeCChhhHHH----HHHHHCCCCCCCcEEEeec
Q 019990 85 AVMVGGFPRKE--GMERKDVMSKNVSIYKAQASALEKHAAPNCKVLVVANPANTNAL----ILKEFAPSIPAKNITCLTR 158 (332)
Q Consensus 85 Vi~~ag~~~~~--~~~~~~~~~~N~~~~~~i~~~i~~~~~~~~~viv~snp~~~~~~----~~~~~~~~~~~~~i~~~t~ 158 (332)
|||+|+.+... .......+..|+..+.++++++++.+ . .++|++|+.. +... .+.+. ...++...|+.+|
T Consensus 66 vih~A~~~~~~~~~~~~~~~~~~n~~~~~~l~~a~~~~~-~-~~iv~~SS~~-vyg~~~~~~~~e~-~~~~p~~~Y~~sK 141 (312)
T 3ko8_A 66 VFHFAANPEVRLSTTEPIVHFNENVVATFNVLEWARQTG-V-RTVVFASSST-VYGDADVIPTPEE-EPYKPISVYGAAK 141 (312)
T ss_dssp EEECCSSCSSSGGGSCHHHHHHHHHHHHHHHHHHHHHHT-C-CEEEEEEEGG-GGCSCSSSSBCTT-SCCCCCSHHHHHH
T ss_pred EEECCCCCCchhhhhCHHHHHHHHHHHHHHHHHHHHHcC-C-CEEEEeCcHH-HhCCCCCCCCCCC-CCCCCCChHHHHH
Confidence 99999864321 12334567889999999999998875 2 2666666421 1000 00111 2234455789999
Q ss_pred ccHHHHHHHHHHHcCCCCCCeeeeEEEecCC
Q 019990 159 LDHNRAMGQISERLKVHVSDVKNVIIWGNHS 189 (332)
Q Consensus 159 l~~~r~~~~~a~~~~v~~~~v~~~~V~G~hg 189 (332)
...+++...+++.+|++...+|..+|||+..
T Consensus 142 ~~~e~~~~~~~~~~g~~~~~lrp~~v~g~~~ 172 (312)
T 3ko8_A 142 AAGEVMCATYARLFGVRCLAVRYANVVGPRL 172 (312)
T ss_dssp HHHHHHHHHHHHHHCCEEEEEEECEEECTTC
T ss_pred HHHHHHHHHHHHHhCCCEEEEeeccccCcCC
Confidence 9999999999999999999999999999854
|
| >2hun_A 336AA long hypothetical DTDP-glucose 4,6-dehydrat; rossmann fold, structural genomics, NPPSFA; HET: NAD; 2.07A {Pyrococcus horikoshii} | Back alignment and structure |
|---|
Probab=99.33 E-value=1.8e-12 Score=118.98 Aligned_cols=176 Identities=14% Similarity=0.091 Sum_probs=114.0
Q ss_pred CcEEEEEcCCChhHHHHHHHHHhcccCCCCCCeEEEEEecccchhhhhhhHhhhhh-hcc-CCccceEEeCCHHHHhCCC
Q 019990 5 PLRVLVTGAAGQIGYALVPMIARGIMLGPDQPVILHMLDIEPAAEALNGVKMELID-AAF-PLLKGVVATTDVVEACKDV 82 (332)
Q Consensus 5 ~~kI~VtGaaG~IGs~l~~~L~~~~~~~~~~~~~i~l~D~~~~~~~~~~~~~dl~~-~~~-~~~~~v~~~~~~~~a~~~a 82 (332)
.|||+||||+||||++++..|++.+. + .+|+.+|+......... ..++.. ... ....|+....++.+++.++
T Consensus 3 ~m~vlVTGatG~iG~~l~~~L~~~g~-~----~~V~~~~r~~~~~~~~~-~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~ 76 (336)
T 2hun_A 3 SMKLLVTGGMGFIGSNFIRYILEKHP-D----WEVINIDKLGYGSNPAN-LKDLEDDPRYTFVKGDVADYELVKELVRKV 76 (336)
T ss_dssp CCEEEEETTTSHHHHHHHHHHHHHCT-T----CEEEEEECCCTTCCGGG-GTTTTTCTTEEEEECCTTCHHHHHHHHHTC
T ss_pred CCeEEEECCCchHHHHHHHHHHHhCC-C----CEEEEEecCcccCchhH-HhhhccCCceEEEEcCCCCHHHHHHHhhCC
Confidence 46899999999999999999998751 0 28888887531111111 111111 000 1123443334456667899
Q ss_pred cEEEEecCCCCCC--CCChhHHHhhhHHHHHHHHHHHHhhcCCCcEEEEEeCChhhHHH----HHHHHCCCCCCCcEEEe
Q 019990 83 NIAVMVGGFPRKE--GMERKDVMSKNVSIYKAQASALEKHAAPNCKVLVVANPANTNAL----ILKEFAPSIPAKNITCL 156 (332)
Q Consensus 83 DiVi~~ag~~~~~--~~~~~~~~~~N~~~~~~i~~~i~~~~~~~~~viv~snp~~~~~~----~~~~~~~~~~~~~i~~~ 156 (332)
|+|||+||..... ..+..++++.|+..+.++++++.+.+ ...++|++|+.. +... .+.+. ...++...|+.
T Consensus 77 d~vih~A~~~~~~~~~~~~~~~~~~Nv~g~~~l~~a~~~~~-~~~~iv~~SS~~-vyg~~~~~~~~E~-~~~~~~~~Y~~ 153 (336)
T 2hun_A 77 DGVVHLAAESHVDRSISSPEIFLHSNVIGTYTLLESIRREN-PEVRFVHVSTDE-VYGDILKGSFTEN-DRLMPSSPYSA 153 (336)
T ss_dssp SEEEECCCCCCHHHHHHCTHHHHHHHHHHHHHHHHHHHHHC-TTSEEEEEEEGG-GGCCCSSSCBCTT-BCCCCCSHHHH
T ss_pred CEEEECCCCcChhhhhhCHHHHHHHHHHHHHHHHHHHHHhC-CCcEEEEeccHH-HHCCCCCCCcCCC-CCCCCCCccHH
Confidence 9999999864310 01234577889999999999999874 334777777521 1000 00010 12344457888
Q ss_pred ecccHHHHHHHHHHHcCCCCCCeeeeEEEecCC
Q 019990 157 TRLDHNRAMGQISERLKVHVSDVKNVIIWGNHS 189 (332)
Q Consensus 157 t~l~~~r~~~~~a~~~~v~~~~v~~~~V~G~hg 189 (332)
+|...+++...+++.++++...+|...|||+..
T Consensus 154 sK~~~e~~~~~~~~~~~~~~~ilrp~~v~g~~~ 186 (336)
T 2hun_A 154 TKAASDMLVLGWTRTYNLNASITRCTNNYGPYQ 186 (336)
T ss_dssp HHHHHHHHHHHHHHHTTCEEEEEEECEEESTTC
T ss_pred HHHHHHHHHHHHHHHhCCCEEEEeeeeeeCcCC
Confidence 999999999889988999999999999999754
|
| >1i24_A Sulfolipid biosynthesis protein SQD1; SDR, short-chain dehydrogenase/reductase, rossmann fold, BIO protein; HET: NAD UPG; 1.20A {Arabidopsis thaliana} SCOP: c.2.1.2 PDB: 1i2c_A* 1i2b_A* 1qrr_A* | Back alignment and structure |
|---|
Probab=99.33 E-value=1.5e-12 Score=122.68 Aligned_cols=178 Identities=12% Similarity=0.138 Sum_probs=110.5
Q ss_pred CCCcEEEEEcCCChhHHHHHHHHHhcccCCCCCCeEEEEEecccchhhh--------------hhhHhhh---hhhcc-C
Q 019990 3 KNPLRVLVTGAAGQIGYALVPMIARGIMLGPDQPVILHMLDIEPAAEAL--------------NGVKMEL---IDAAF-P 64 (332)
Q Consensus 3 ~~~~kI~VtGaaG~IGs~l~~~L~~~~~~~~~~~~~i~l~D~~~~~~~~--------------~~~~~dl---~~~~~-~ 64 (332)
.++++|+||||+||||++++..|++.|. +|+++|+......- .....++ ..... .
T Consensus 9 ~~~~~vlVTG~tGfIG~~l~~~L~~~G~-------~V~~~~r~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~v~~ 81 (404)
T 1i24_A 9 HHGSRVMVIGGDGYCGWATALHLSKKNY-------EVCIVDNLVRRLFDHQLGLESLTPIASIHDRISRWKALTGKSIEL 81 (404)
T ss_dssp ---CEEEEETTTSHHHHHHHHHHHHTTC-------EEEEEECCHHHHHHHHHTCCCSSCCCCHHHHHHHHHHHHCCCCEE
T ss_pred cCCCeEEEeCCCcHHHHHHHHHHHhCCC-------eEEEEEecCccccccccccccccccchhhhhhhhHhhccCCceEE
Confidence 3578999999999999999999998875 89999874211000 0000111 01011 1
Q ss_pred CccceEEeCCHHHHhCC--CcEEEEecCCCCCC--CCCh---hHHHhhhHHHHHHHHHHHHhhcCCCcEEEEEeCChhhH
Q 019990 65 LLKGVVATTDVVEACKD--VNIAVMVGGFPRKE--GMER---KDVMSKNVSIYKAQASALEKHAAPNCKVLVVANPANTN 137 (332)
Q Consensus 65 ~~~~v~~~~~~~~a~~~--aDiVi~~ag~~~~~--~~~~---~~~~~~N~~~~~~i~~~i~~~~~~~~~viv~snp~~~~ 137 (332)
...|+....++.+++++ +|+|||+||..... ..+. ...+..|+.++.++++++.+.+ ...++|++|+. .+.
T Consensus 82 ~~~Dl~d~~~~~~~~~~~~~D~Vih~A~~~~~~~~~~~~~~~~~~~~~Nv~gt~~ll~a~~~~~-~~~~~V~~SS~-~vy 159 (404)
T 1i24_A 82 YVGDICDFEFLAESFKSFEPDSVVHFGEQRSAPYSMIDRSRAVYTQHNNVIGTLNVLFAIKEFG-EECHLVKLGTM-GEY 159 (404)
T ss_dssp EESCTTSHHHHHHHHHHHCCSEEEECCSCCCHHHHTSCHHHHHHHHHHHHHHHHHHHHHHHHHC-TTCEEEEECCG-GGG
T ss_pred EECCCCCHHHHHHHHhccCCCEEEECCCCCCccchhhCccchhhhHHHHHHHHHHHHHHHHHhC-CCcEEEEeCcH-HHh
Confidence 12344333445566776 99999999864311 1111 1356889999999999999875 22367777753 211
Q ss_pred HHH---HHHH-------------CCCCCCCcEEEeecccHHHHHHHHHHHcCCCCCCeeeeEEEecCC
Q 019990 138 ALI---LKEF-------------APSIPAKNITCLTRLDHNRAMGQISERLKVHVSDVKNVIIWGNHS 189 (332)
Q Consensus 138 ~~~---~~~~-------------~~~~~~~~i~~~t~l~~~r~~~~~a~~~~v~~~~v~~~~V~G~hg 189 (332)
... +.+. ....++...|+.+|...+++...+++.+|++...+|...|||+..
T Consensus 160 g~~~~~~~E~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~~gi~~~ivrp~~v~Gp~~ 227 (404)
T 1i24_A 160 GTPNIDIEEGYITITHNGRTDTLPYPKQASSFYHLSKVHDSHNIAFTCKAWGIRATDLNQGVVYGVKT 227 (404)
T ss_dssp CCCSSCBCSSEEEEEETTEEEEEECCCCCCSHHHHHHHHHHHHHHHHHHHHCCEEEEEEECEEECSCC
T ss_pred CCCCCCCCccccccccccccccccCCCCCCChhHHHHHHHHHHHHHHHHhcCCeEEEEecceeeCCCC
Confidence 000 0000 001223346788898888888888888899999999999999853
|
| >2pk3_A GDP-6-deoxy-D-LYXO-4-hexulose reductase; SDR, short-chain dehydrogenase/reductase, rossmann fold, oxidoreductase; HET: A2R GDD; 1.82A {Aneurinibacillus thermoaerophilus} | Back alignment and structure |
|---|
Probab=99.32 E-value=9.4e-13 Score=120.17 Aligned_cols=168 Identities=13% Similarity=0.129 Sum_probs=112.6
Q ss_pred CCcEEEEEcCCChhHHHHHHHHHhcccCCCCCCeEEEEEecccchhhhhhhHhhhhhhccCCccceEEeCCHHHHhCC--
Q 019990 4 NPLRVLVTGAAGQIGYALVPMIARGIMLGPDQPVILHMLDIEPAAEALNGVKMELIDAAFPLLKGVVATTDVVEACKD-- 81 (332)
Q Consensus 4 ~~~kI~VtGaaG~IGs~l~~~L~~~~~~~~~~~~~i~l~D~~~~~~~~~~~~~dl~~~~~~~~~~v~~~~~~~~a~~~-- 81 (332)
++++|+||||+||||++++..|++.|. +|++++++... .. + ... ....|+....++.+++++
T Consensus 11 ~~~~vlVTGatG~iG~~l~~~L~~~G~-------~V~~~~r~~~~---~~----l-~~~-~~~~Dl~d~~~~~~~~~~~~ 74 (321)
T 2pk3_A 11 GSMRALITGVAGFVGKYLANHLTEQNV-------EVFGTSRNNEA---KL----P-NVE-MISLDIMDSQRVKKVISDIK 74 (321)
T ss_dssp --CEEEEETTTSHHHHHHHHHHHHTTC-------EEEEEESCTTC---CC----T-TEE-EEECCTTCHHHHHHHHHHHC
T ss_pred CcceEEEECCCChHHHHHHHHHHHCCC-------EEEEEecCCcc---cc----c-eee-EEECCCCCHHHHHHHHHhcC
Confidence 468999999999999999999998875 89999976421 10 1 110 112344333445566665
Q ss_pred CcEEEEecCCCCC--CCCChhHHHhhhHHHHHHHHHHHHhhcCCCcEEEEEeCChhhH-----HHHHHHHCCCCCCCcEE
Q 019990 82 VNIAVMVGGFPRK--EGMERKDVMSKNVSIYKAQASALEKHAAPNCKVLVVANPANTN-----ALILKEFAPSIPAKNIT 154 (332)
Q Consensus 82 aDiVi~~ag~~~~--~~~~~~~~~~~N~~~~~~i~~~i~~~~~~~~~viv~snp~~~~-----~~~~~~~~~~~~~~~i~ 154 (332)
+|+|||+||.... ...+..+.+..|+..+.++++++.+.. ...++|++|+..-.- ...+.+. ...++...|
T Consensus 75 ~d~vih~A~~~~~~~~~~~~~~~~~~Nv~g~~~l~~a~~~~~-~~~~iv~~SS~~v~g~~~~~~~~~~E~-~~~~~~~~Y 152 (321)
T 2pk3_A 75 PDYIFHLAAKSSVKDSWLNKKGTFSTNVFGTLHVLDAVRDSN-LDCRILTIGSSEEYGMILPEESPVSEE-NQLRPMSPY 152 (321)
T ss_dssp CSEEEECCSCCCHHHHTTCHHHHHHHHHHHHHHHHHHHHHHT-CCCEEEEEEEGGGTBSCCGGGCSBCTT-SCCBCCSHH
T ss_pred CCEEEEcCcccchhhhhhcHHHHHHHHHHHHHHHHHHHHHhC-CCCeEEEEccHHhcCCCCCCCCCCCCC-CCCCCCCcc
Confidence 8999999987431 112345678899999999999997763 234677776532100 0000110 123344568
Q ss_pred EeecccHHHHHHHHHHHcCCCCCCeeeeEEEecCC
Q 019990 155 CLTRLDHNRAMGQISERLKVHVSDVKNVIIWGNHS 189 (332)
Q Consensus 155 ~~t~l~~~r~~~~~a~~~~v~~~~v~~~~V~G~hg 189 (332)
+.+|...+++...+++.+|++...+|..+|||+..
T Consensus 153 ~~sK~~~E~~~~~~~~~~gi~~~ilrp~~v~g~~~ 187 (321)
T 2pk3_A 153 GVSKASVGMLARQYVKAYGMDIIHTRTFNHIGPGQ 187 (321)
T ss_dssp HHHHHHHHHHHHHHHHHHCCEEEEEEECEEECTTC
T ss_pred HHHHHHHHHHHHHHHHHcCCCEEEEEeCcccCcCC
Confidence 88999999998888888899999999999999754
|
| >1orr_A CDP-tyvelose-2-epimerase; rossmann fold, short-chain dehydrogenase/reductase, isomeras; HET: NAD CDP; 1.50A {Salmonella typhi} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=99.32 E-value=6.6e-13 Score=122.38 Aligned_cols=173 Identities=12% Similarity=0.088 Sum_probs=113.6
Q ss_pred CcEEEEEcCCChhHHHHHHHHHhcccCCCCCCeEEEEEecccchhhhhhhHhhhhhhc-c-CCccceEEeCCHHHHhCC-
Q 019990 5 PLRVLVTGAAGQIGYALVPMIARGIMLGPDQPVILHMLDIEPAAEALNGVKMELIDAA-F-PLLKGVVATTDVVEACKD- 81 (332)
Q Consensus 5 ~~kI~VtGaaG~IGs~l~~~L~~~~~~~~~~~~~i~l~D~~~~~~~~~~~~~dl~~~~-~-~~~~~v~~~~~~~~a~~~- 81 (332)
||+|+||||+||||++++..|++.|. +|+++|+.... ........+.... . ....|+....++.+++++
T Consensus 1 M~~vlVTGatG~iG~~l~~~L~~~g~-------~V~~~~r~~~~-~~~~~~~~l~~~~~~~~~~~Dl~d~~~~~~~~~~~ 72 (347)
T 1orr_A 1 MAKLLITGGCGFLGSNLASFALSQGI-------DLIVFDNLSRK-GATDNLHWLSSLGNFEFVHGDIRNKNDVTRLITKY 72 (347)
T ss_dssp -CEEEEETTTSHHHHHHHHHHHHTTC-------EEEEEECCCST-THHHHHHHHHTTCCCEEEECCTTCHHHHHHHHHHH
T ss_pred CcEEEEeCCCchhHHHHHHHHHhCCC-------EEEEEeCCCcc-CchhhhhhhccCCceEEEEcCCCCHHHHHHHHhcc
Confidence 46899999999999999999998875 89999863211 1111111222110 1 112344444456667777
Q ss_pred -CcEEEEecCCCCCC--CCChhHHHhhhHHHHHHHHHHHHhhcCCCcEEEEEeCChhhHHHH------------------
Q 019990 82 -VNIAVMVGGFPRKE--GMERKDVMSKNVSIYKAQASALEKHAAPNCKVLVVANPANTNALI------------------ 140 (332)
Q Consensus 82 -aDiVi~~ag~~~~~--~~~~~~~~~~N~~~~~~i~~~i~~~~~~~~~viv~snp~~~~~~~------------------ 140 (332)
+|+|||+||..... ..+....+..|+..+.++++++.+.. ...++|++|+.. +....
T Consensus 73 ~~d~vih~A~~~~~~~~~~~~~~~~~~nv~~~~~l~~a~~~~~-~~~~iv~~SS~~-v~g~~~~~~~~e~~~~~~~~~~~ 150 (347)
T 1orr_A 73 MPDSCFHLAGQVAMTTSIDNPCMDFEINVGGTLNLLEAVRQYN-SNCNIIYSSTNK-VYGDLEQYKYNETETRYTCVDKP 150 (347)
T ss_dssp CCSEEEECCCCCCHHHHHHCHHHHHHHHHHHHHHHHHHHHHHC-TTCEEEEEEEGG-GGTTCTTSCEEECSSCEEETTCT
T ss_pred CCCEEEECCcccChhhhhhCHHHHHHHHHHHHHHHHHHHHHhC-CCceEEEeccHH-HhCCCCcCCcccccccccccccc
Confidence 99999999864310 01234567889999999999999886 334677777532 11000
Q ss_pred --HHHHCCCCCCCcEEEeecccHHHHHHHHHHHcCCCCCCeeeeEEEecC
Q 019990 141 --LKEFAPSIPAKNITCLTRLDHNRAMGQISERLKVHVSDVKNVIIWGNH 188 (332)
Q Consensus 141 --~~~~~~~~~~~~i~~~t~l~~~r~~~~~a~~~~v~~~~v~~~~V~G~h 188 (332)
+.+. ...++...|+.+|...+++...+++.+|++...+|...|||+.
T Consensus 151 ~~~~e~-~~~~~~~~Y~~sK~~~E~~~~~~~~~~gi~~~ilrp~~v~g~~ 199 (347)
T 1orr_A 151 NGYDES-TQLDFHSPYGCSKGAADQYMLDYARIFGLNTVVFRHSSMYGGR 199 (347)
T ss_dssp TCBCTT-SCCCCCHHHHHHHHHHHHHHHHHHHHHCCEEEEEEECCEECTT
T ss_pred cCcccc-CCCCCCCchHHHHHHHHHHHHHHHHHhCCcEEEEccCceeCcC
Confidence 0000 1223444688899999999988888899999999999999974
|
| >2q1s_A Putative nucleotide sugar epimerase/ dehydratase; rossman fold, protein-NADH complex, sugar binding protein; HET: NAI; 1.50A {Bordetella bronchiseptica} PDB: 2pzj_A* 2q1t_A* 2q1u_A* | Back alignment and structure |
|---|
Probab=99.31 E-value=7.1e-13 Score=124.12 Aligned_cols=170 Identities=13% Similarity=0.051 Sum_probs=112.7
Q ss_pred CCcEEEEEcCCChhHHHHHHHHHhcc-cCCCCCCeEEEEEecccchhhhhhhHhhhh-hhcc-CCccceEEeCCHHHHhC
Q 019990 4 NPLRVLVTGAAGQIGYALVPMIARGI-MLGPDQPVILHMLDIEPAAEALNGVKMELI-DAAF-PLLKGVVATTDVVEACK 80 (332)
Q Consensus 4 ~~~kI~VtGaaG~IGs~l~~~L~~~~-~~~~~~~~~i~l~D~~~~~~~~~~~~~dl~-~~~~-~~~~~v~~~~~~~~a~~ 80 (332)
.+|+|+||||+||||++++..|++.+ . +|+++++.... .. ..+. .... ....|+....++.++++
T Consensus 31 ~~~~ilVtGatG~iG~~l~~~L~~~g~~-------~V~~~~r~~~~--~~---~~l~~~~~v~~~~~Dl~d~~~l~~~~~ 98 (377)
T 2q1s_A 31 ANTNVMVVGGAGFVGSNLVKRLLELGVN-------QVHVVDNLLSA--EK---INVPDHPAVRFSETSITDDALLASLQD 98 (377)
T ss_dssp TTCEEEEETTTSHHHHHHHHHHHHTTCS-------EEEEECCCTTC--CG---GGSCCCTTEEEECSCTTCHHHHHHCCS
T ss_pred CCCEEEEECCccHHHHHHHHHHHHcCCc-------eEEEEECCCCC--ch---hhccCCCceEEEECCCCCHHHHHHHhh
Confidence 45789999999999999999999887 5 89999875321 10 0111 0000 11234443445666788
Q ss_pred CCcEEEEecCCCCCC--CCChhHHHhhhHHHHHHHHHHHHhh-cCCCcEEEEEeCChhhHHH----HHH--HHCC---CC
Q 019990 81 DVNIAVMVGGFPRKE--GMERKDVMSKNVSIYKAQASALEKH-AAPNCKVLVVANPANTNAL----ILK--EFAP---SI 148 (332)
Q Consensus 81 ~aDiVi~~ag~~~~~--~~~~~~~~~~N~~~~~~i~~~i~~~-~~~~~~viv~snp~~~~~~----~~~--~~~~---~~ 148 (332)
++|+|||+|+..... ..+..+.+..|+..+.++++++++. + . .++|++|+.. +... .+. +. . ..
T Consensus 99 ~~d~Vih~A~~~~~~~~~~~~~~~~~~nv~~~~~ll~a~~~~~~-~-~~~V~~SS~~-vyg~~~~~~~~~~E~-~~~~~~ 174 (377)
T 2q1s_A 99 EYDYVFHLATYHGNQSSIHDPLADHENNTLTTLKLYERLKHFKR-L-KKVVYSAAGC-SIAEKTFDDAKATEE-TDIVSL 174 (377)
T ss_dssp CCSEEEECCCCSCHHHHHHCHHHHHHHHTHHHHHHHHHHTTCSS-C-CEEEEEEEC---------------CC-CCCCCS
T ss_pred CCCEEEECCCccCchhhhhCHHHHHHHHHHHHHHHHHHHHHhCC-C-CeEEEeCCHH-HcCCCCCCCcCcccc-cccccc
Confidence 999999999864211 0123457788999999999999876 3 2 2666666532 1100 111 21 1 12
Q ss_pred -CCCcEEEeecccHHHHHHHHHHHcCCCCCCeeeeEEEecCC
Q 019990 149 -PAKNITCLTRLDHNRAMGQISERLKVHVSDVKNVIIWGNHS 189 (332)
Q Consensus 149 -~~~~i~~~t~l~~~r~~~~~a~~~~v~~~~v~~~~V~G~hg 189 (332)
++...|+.++...+++...+++.+|++...+|...|||+..
T Consensus 175 ~~~~~~Y~~sK~~~E~~~~~~~~~~gi~~~ilRp~~v~G~~~ 216 (377)
T 2q1s_A 175 HNNDSPYSMSKIFGEFYSVYYHKQHQLPTVRARFQNVYGPGE 216 (377)
T ss_dssp SCCCSHHHHHHHHHHHHHHHHHHHHCCCEEEEEECCEECTTC
T ss_pred cCCCCchHHHHHHHHHHHHHHHHHhCCCEEEEeeccEECCCC
Confidence 34446888999999998888888899999999999999754
|
| >1sb8_A WBPP; epimerase, 4-epimerase, UDP-galnac, UDP-GLCNAC, SDR, G SYK, UDP, N-acetylglucosamine, N- acetylgalactosamine, UDP-GLC, isomerase; HET: NAD UD2; 2.10A {Pseudomonas aeruginosa} SCOP: c.2.1.2 PDB: 1sb9_A* | Back alignment and structure |
|---|
Probab=99.31 E-value=2.2e-12 Score=119.41 Aligned_cols=176 Identities=14% Similarity=0.076 Sum_probs=114.1
Q ss_pred CCcEEEEEcCCChhHHHHHHHHHhcccCCCCCCeEEEEEecccch--hhhhhhHhhhh---hhcc-CCccceEEeCCHHH
Q 019990 4 NPLRVLVTGAAGQIGYALVPMIARGIMLGPDQPVILHMLDIEPAA--EALNGVKMELI---DAAF-PLLKGVVATTDVVE 77 (332)
Q Consensus 4 ~~~kI~VtGaaG~IGs~l~~~L~~~~~~~~~~~~~i~l~D~~~~~--~~~~~~~~dl~---~~~~-~~~~~v~~~~~~~~ 77 (332)
++|+|+||||+||||++++..|++.|. +|+++++.... +.+......+. .... ....|+....++.+
T Consensus 26 ~~~~vlVtGatG~iG~~l~~~L~~~g~-------~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~ 98 (352)
T 1sb8_A 26 QPKVWLITGVAGFIGSNLLETLLKLDQ-------KVVGLDNFATGHQRNLDEVRSLVSEKQWSNFKFIQGDIRNLDDCNN 98 (352)
T ss_dssp SCCEEEEETTTSHHHHHHHHHHHHTTC-------EEEEEECCSSCCHHHHHHHHHHSCHHHHTTEEEEECCTTSHHHHHH
T ss_pred cCCeEEEECCCcHHHHHHHHHHHHCCC-------EEEEEeCCCccchhhHHHHhhhcccccCCceEEEECCCCCHHHHHH
Confidence 468999999999999999999998875 89999875321 11111111110 0000 11234433345667
Q ss_pred HhCCCcEEEEecCCCCCC--CCChhHHHhhhHHHHHHHHHHHHhhcCCCcEEEEEeCChhhHHH---HHHHHCCCCCCCc
Q 019990 78 ACKDVNIAVMVGGFPRKE--GMERKDVMSKNVSIYKAQASALEKHAAPNCKVLVVANPANTNAL---ILKEFAPSIPAKN 152 (332)
Q Consensus 78 a~~~aDiVi~~ag~~~~~--~~~~~~~~~~N~~~~~~i~~~i~~~~~~~~~viv~snp~~~~~~---~~~~~~~~~~~~~ 152 (332)
+++++|+|||+||..... ..+....+..|+..+.++++++.+.+ . .++|++|+..-.-.. .+.+. ...++..
T Consensus 99 ~~~~~d~vih~A~~~~~~~~~~~~~~~~~~n~~~~~~l~~a~~~~~-~-~~~v~~SS~~~~~~~~~~~~~E~-~~~~~~~ 175 (352)
T 1sb8_A 99 ACAGVDYVLHQAALGSVPRSINDPITSNATNIDGFLNMLIAARDAK-V-QSFTYAASSSTYGDHPGLPKVED-TIGKPLS 175 (352)
T ss_dssp HHTTCSEEEECCSCCCHHHHHHCHHHHHHHHTHHHHHHHHHHHHTT-C-SEEEEEEEGGGGTTCCCSSBCTT-CCCCCCS
T ss_pred HhcCCCEEEECCcccCchhhhhCHHHHHHHHHHHHHHHHHHHHHcC-C-CEEEEeccHHhcCCCCCCCCCCC-CCCCCCC
Confidence 788999999999864211 01234567889999999999998864 2 366766653210000 00010 1122344
Q ss_pred EEEeecccHHHHHHHHHHHcCCCCCCeeeeEEEecCC
Q 019990 153 ITCLTRLDHNRAMGQISERLKVHVSDVKNVIIWGNHS 189 (332)
Q Consensus 153 i~~~t~l~~~r~~~~~a~~~~v~~~~v~~~~V~G~hg 189 (332)
.|+.++...+++...+++.+|++...+|...|||+..
T Consensus 176 ~Y~~sK~~~e~~~~~~~~~~g~~~~ilRp~~v~G~~~ 212 (352)
T 1sb8_A 176 PYAVTKYVNELYADVFSRCYGFSTIGLRYFNVFGRRQ 212 (352)
T ss_dssp HHHHHHHHHHHHHHHHHHHHCCCCEEEEECCEECTTC
T ss_pred hhHHHHHHHHHHHHHHHHHcCCCEEEEEECceeCcCC
Confidence 6788999999998888888999999999999999754
|
| >1rpn_A GDP-mannose 4,6-dehydratase; short-chain dehydrogenase/reductase, rossmann fold, lyase; HET: NDP GDP; 2.15A {Pseudomonas aeruginosa} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=99.31 E-value=2.6e-12 Score=117.89 Aligned_cols=175 Identities=13% Similarity=-0.015 Sum_probs=112.7
Q ss_pred CCcEEEEEcCCChhHHHHHHHHHhcccCCCCCCeEEEEEecccchhhhhhhHhhhh-hhcc-CCccceEEeCCHHHHhCC
Q 019990 4 NPLRVLVTGAAGQIGYALVPMIARGIMLGPDQPVILHMLDIEPAAEALNGVKMELI-DAAF-PLLKGVVATTDVVEACKD 81 (332)
Q Consensus 4 ~~~kI~VtGaaG~IGs~l~~~L~~~~~~~~~~~~~i~l~D~~~~~~~~~~~~~dl~-~~~~-~~~~~v~~~~~~~~a~~~ 81 (332)
+++||+||||+||||++++..|++.|. +|+++++...... ......+. .... ....|+....++.+++++
T Consensus 13 ~~~~vlVTGatG~iG~~l~~~L~~~g~-------~V~~~~r~~~~~~-~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~ 84 (335)
T 1rpn_A 13 MTRSALVTGITGQDGAYLAKLLLEKGY-------RVHGLVARRSSDT-RWRLRELGIEGDIQYEDGDMADACSVQRAVIK 84 (335)
T ss_dssp --CEEEEETTTSHHHHHHHHHHHHTTC-------EEEEEECCCSSCC-CHHHHHTTCGGGEEEEECCTTCHHHHHHHHHH
T ss_pred cCCeEEEECCCChHHHHHHHHHHHCCC-------eEEEEeCCCcccc-ccchhhccccCceEEEECCCCCHHHHHHHHHH
Confidence 468999999999999999999998875 8999987642100 01111110 0001 112344333445566664
Q ss_pred --CcEEEEecCCCCCC--CCChhHHHhhhHHHHHHHHHHHHhhcCCCcEEEEEeCChhhHHH----HHHHHCCCCCCCcE
Q 019990 82 --VNIAVMVGGFPRKE--GMERKDVMSKNVSIYKAQASALEKHAAPNCKVLVVANPANTNAL----ILKEFAPSIPAKNI 153 (332)
Q Consensus 82 --aDiVi~~ag~~~~~--~~~~~~~~~~N~~~~~~i~~~i~~~~~~~~~viv~snp~~~~~~----~~~~~~~~~~~~~i 153 (332)
.|+|||+||..... ..+....+..|+..+.++++++.+.+ ...++|++|+.. .... .+.+. ....|...
T Consensus 85 ~~~d~Vih~A~~~~~~~~~~~~~~~~~~n~~~~~~l~~a~~~~~-~~~~~v~~SS~~-v~g~~~~~~~~E~-~~~~p~~~ 161 (335)
T 1rpn_A 85 AQPQEVYNLAAQSFVGASWNQPVTTGVVDGLGVTHLLEAIRQFS-PETRFYQASTSE-MFGLIQAERQDEN-TPFYPRSP 161 (335)
T ss_dssp HCCSEEEECCSCCCHHHHTTSHHHHHHHHTHHHHHHHHHHHHHC-TTSEEEEEEEGG-GGCSCSSSSBCTT-SCCCCCSH
T ss_pred cCCCEEEECccccchhhhhhChHHHHHHHHHHHHHHHHHHHHhC-CCCeEEEEeCHH-HhCCCCCCCCCcc-cCCCCCCh
Confidence 69999999864321 12345577889999999999999874 224677777531 1000 00111 12233446
Q ss_pred EEeecccHHHHHHHHHHHcCCCCCCeeeeEEEecCC
Q 019990 154 TCLTRLDHNRAMGQISERLKVHVSDVKNVIIWGNHS 189 (332)
Q Consensus 154 ~~~t~l~~~r~~~~~a~~~~v~~~~v~~~~V~G~hg 189 (332)
|+.++...+++...+++.++++...+|.+.+||+..
T Consensus 162 Y~~sK~~~e~~~~~~~~~~~~~~~i~r~~~v~Gp~~ 197 (335)
T 1rpn_A 162 YGVAKLYGHWITVNYRESFGLHASSGILFNHESPLR 197 (335)
T ss_dssp HHHHHHHHHHHHHHHHHHHCCCEEEEEECCEECTTS
T ss_pred hHHHHHHHHHHHHHHHHHcCCcEEEEeeCcccCCCC
Confidence 888999999999888988999998899888999743
|
| >2p4h_X Vestitone reductase; NADPH-dependent reductase, isoflavonoid, plant protein; 1.40A {Medicago sativa} | Back alignment and structure |
|---|
Probab=99.30 E-value=9.8e-12 Score=113.34 Aligned_cols=175 Identities=12% Similarity=0.041 Sum_probs=107.7
Q ss_pred cEEEEEcCCChhHHHHHHHHHhcccCCCCCCeEEEEEec-ccch-hhhhhhHhhhhh--hcc-CCccceEEeCCHHHHhC
Q 019990 6 LRVLVTGAAGQIGYALVPMIARGIMLGPDQPVILHMLDI-EPAA-EALNGVKMELID--AAF-PLLKGVVATTDVVEACK 80 (332)
Q Consensus 6 ~kI~VtGaaG~IGs~l~~~L~~~~~~~~~~~~~i~l~D~-~~~~-~~~~~~~~dl~~--~~~-~~~~~v~~~~~~~~a~~ 80 (332)
++|+||||+||||++++..|++.|+ +|+.+++ +... +... ...++.. ... ....|+....++.++++
T Consensus 2 k~vlVTGatG~iG~~l~~~L~~~G~-------~V~~~~r~~~~~~~~~~-~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~ 73 (322)
T 2p4h_X 2 GRVCVTGGTGFLGSWIIKSLLENGY-------SVNTTIRADPERKRDVS-FLTNLPGASEKLHFFNADLSNPDSFAAAIE 73 (322)
T ss_dssp CEEEEESTTSHHHHHHHHHHHHTTC-------EEEEECCCC----CCCH-HHHTSTTHHHHEEECCCCTTCGGGGHHHHT
T ss_pred CEEEEECChhHHHHHHHHHHHHCCC-------EEEEEEeCCccchhHHH-HHHhhhccCCceEEEecCCCCHHHHHHHHc
Confidence 6899999999999999999998875 7887775 3210 0111 0011110 001 12245555566778889
Q ss_pred CCcEEEEecCCCCCC-CCChhHHHhhhHHHHHHHHHHHHhhcCCCcEEEEEeCChhhHHH-----HHHHHCC-------C
Q 019990 81 DVNIAVMVGGFPRKE-GMERKDVMSKNVSIYKAQASALEKHAAPNCKVLVVANPANTNAL-----ILKEFAP-------S 147 (332)
Q Consensus 81 ~aDiVi~~ag~~~~~-~~~~~~~~~~N~~~~~~i~~~i~~~~~~~~~viv~snp~~~~~~-----~~~~~~~-------~ 147 (332)
++|+|||+|+..... ..+..++++.|+.++.++++++.+.. .-.++|++|+....... .+.+... .
T Consensus 74 ~~d~vih~A~~~~~~~~~~~~~~~~~nv~gt~~l~~aa~~~~-~~~~iV~~SS~~~~~~~~~~~~~~~e~~~~~~~~~~~ 152 (322)
T 2p4h_X 74 GCVGIFHTASPIDFAVSEPEEIVTKRTVDGALGILKACVNSK-TVKRFIYTSSGSAVSFNGKDKDVLDESDWSDVDLLRS 152 (322)
T ss_dssp TCSEEEECCCCC--------CHHHHHHHHHHHHHHHHHTTCS-SCCEEEEEEEGGGTSCSSSCCSEECTTCCCCHHHHHH
T ss_pred CCCEEEEcCCcccCCCCChHHHHHHHHHHHHHHHHHHHHhcC-CccEEEEeccHHHcccCCCCCeecCCccccchhhhcc
Confidence 999999999643111 11123478899999999999998862 12366666653211000 0000000 0
Q ss_pred CCCCc-EEEeecccHHHHHHHHHHHcCCCCCCeeeeEEEecCC
Q 019990 148 IPAKN-ITCLTRLDHNRAMGQISERLKVHVSDVKNVIIWGNHS 189 (332)
Q Consensus 148 ~~~~~-i~~~t~l~~~r~~~~~a~~~~v~~~~v~~~~V~G~hg 189 (332)
..|.. .|+.+|...+++...+++..|++...+|..+|||+..
T Consensus 153 ~~p~~~~Y~~sK~~~e~~~~~~~~~~gi~~~~lrp~~v~g~~~ 195 (322)
T 2p4h_X 153 VKPFGWNYAVSKTLAEKAVLEFGEQNGIDVVTLILPFIVGRFV 195 (322)
T ss_dssp HCCTTHHHHHHHHHHHHHHHHHHHHTTCCEEEEEECEEESCCC
T ss_pred cCcccccHHHHHHHHHHHHHHHHHhcCCcEEEEcCCceECCCC
Confidence 01111 4778888888888888888899999999999999854
|
| >2c20_A UDP-glucose 4-epimerase; carbohydrate metabolism, galactose metabolism, isomerase, NAD, spine; HET: NAD; 2.7A {Bacillus anthracis} | Back alignment and structure |
|---|
Probab=99.30 E-value=1.8e-12 Score=118.75 Aligned_cols=168 Identities=11% Similarity=0.047 Sum_probs=111.0
Q ss_pred CcEEEEEcCCChhHHHHHHHHHhcccCCCCCCeEEEEEecccchhhhhhhHhhhhhhccCCccceEEeCCHHHHhC--CC
Q 019990 5 PLRVLVTGAAGQIGYALVPMIARGIMLGPDQPVILHMLDIEPAAEALNGVKMELIDAAFPLLKGVVATTDVVEACK--DV 82 (332)
Q Consensus 5 ~~kI~VtGaaG~IGs~l~~~L~~~~~~~~~~~~~i~l~D~~~~~~~~~~~~~dl~~~~~~~~~~v~~~~~~~~a~~--~a 82 (332)
||||+||||+||||++++..|++.+. +|+++|+.... .. ..+.........|+.....+.++++ ++
T Consensus 1 M~~ilVtGatG~iG~~l~~~L~~~g~-------~V~~~~r~~~~--~~---~~~~~~~~~~~~D~~~~~~~~~~~~~~~~ 68 (330)
T 2c20_A 1 MNSILICGGAGYIGSHAVKKLVDEGL-------SVVVVDNLQTG--HE---DAITEGAKFYNGDLRDKAFLRDVFTQENI 68 (330)
T ss_dssp -CEEEEETTTSHHHHHHHHHHHHTTC-------EEEEEECCSSC--CG---GGSCTTSEEEECCTTCHHHHHHHHHHSCE
T ss_pred CCEEEEECCCcHHHHHHHHHHHhCCC-------EEEEEeCCCcC--ch---hhcCCCcEEEECCCCCHHHHHHHHhhcCC
Confidence 46899999999999999999998875 88888875321 11 1111100011134433344556677 89
Q ss_pred cEEEEecCCCCCC--CCChhHHHhhhHHHHHHHHHHHHhhcCCCcEEEEEeCChhhHHH----HHHHHCCCCCCCcEEEe
Q 019990 83 NIAVMVGGFPRKE--GMERKDVMSKNVSIYKAQASALEKHAAPNCKVLVVANPANTNAL----ILKEFAPSIPAKNITCL 156 (332)
Q Consensus 83 DiVi~~ag~~~~~--~~~~~~~~~~N~~~~~~i~~~i~~~~~~~~~viv~snp~~~~~~----~~~~~~~~~~~~~i~~~ 156 (332)
|+|||+|+..... ..+..+.+..|+..+.++++++++.+ . .++|++|+. ..... .+.+. ...++...|+.
T Consensus 69 d~vih~a~~~~~~~~~~~~~~~~~~n~~~~~~l~~a~~~~~-~-~~~v~~Ss~-~~~~~~~~~~~~E~-~~~~~~~~Y~~ 144 (330)
T 2c20_A 69 EAVMHFAADSLVGVSMEKPLQYYNNNVYGALCLLEVMDEFK-V-DKFIFSSTA-ATYGEVDVDLITEE-TMTNPTNTYGE 144 (330)
T ss_dssp EEEEECCCCCCHHHHHHSHHHHHHHHHHHHHHHHHHHHHTT-C-CEEEEECCG-GGGCSCSSSSBCTT-SCCCCSSHHHH
T ss_pred CEEEECCcccCccccccCHHHHHHHHhHHHHHHHHHHHHcC-C-CEEEEeCCc-eeeCCCCCCCCCcC-CCCCCCChHHH
Confidence 9999999864311 01234567889999999999998864 2 366766652 21100 00110 12234456888
Q ss_pred ecccHHHHHHHHHHHcCCCCCCeeeeEEEecC
Q 019990 157 TRLDHNRAMGQISERLKVHVSDVKNVIIWGNH 188 (332)
Q Consensus 157 t~l~~~r~~~~~a~~~~v~~~~v~~~~V~G~h 188 (332)
+|...+++...+++.+|++...+|..+|||+.
T Consensus 145 sK~~~e~~~~~~~~~~~~~~~ilrp~~v~G~~ 176 (330)
T 2c20_A 145 TKLAIEKMLHWYSQASNLRYKIFRYFNVAGAT 176 (330)
T ss_dssp HHHHHHHHHHHHHHTSSCEEEEEECSEEECCC
T ss_pred HHHHHHHHHHHHHHHhCCcEEEEecCcccCCC
Confidence 99999999888888889999999999999975
|
| >2x6t_A ADP-L-glycero-D-manno-heptose-6-epimerase; isomerase, carbohydrate metabolism, stress response; HET: NAP ADP BMA; 2.36A {Escherichia coli} PDB: 2x86_A* | Back alignment and structure |
|---|
Probab=99.29 E-value=1.2e-11 Score=114.67 Aligned_cols=167 Identities=15% Similarity=0.149 Sum_probs=111.9
Q ss_pred CcEEEEEcCCChhHHHHHHHHHhcc-cCCCCCCeEEEEEecccchhhhhhhHhhhhhhccCCccceEEeCCHHHHhC---
Q 019990 5 PLRVLVTGAAGQIGYALVPMIARGI-MLGPDQPVILHMLDIEPAAEALNGVKMELIDAAFPLLKGVVATTDVVEACK--- 80 (332)
Q Consensus 5 ~~kI~VtGaaG~IGs~l~~~L~~~~-~~~~~~~~~i~l~D~~~~~~~~~~~~~dl~~~~~~~~~~v~~~~~~~~a~~--- 80 (332)
.|+|+||||+||||++++..|++.| . +|+++++....... ..+... ....++.....+.++++
T Consensus 46 ~~~vlVtGatG~iG~~l~~~L~~~g~~-------~V~~~~r~~~~~~~----~~~~~~--~~~~d~~~~~~~~~~~~~~~ 112 (357)
T 2x6t_A 46 GRMIIVTGGAGFIGSNIVKALNDKGIT-------DILVVDNLKDGTKF----VNLVDL--NIADYMDKEDFLIQIMAGEE 112 (357)
T ss_dssp --CEEEETTTSHHHHHHHHHHHHTTCC-------CEEEEECCSSGGGG----GGTTTS--CCSEEEEHHHHHHHHHTTCC
T ss_pred CCEEEEECCCcHHHHHHHHHHHHCCCc-------EEEEEecCCCcchh----hcccCc--eEeeecCcHHHHHHHHhhcc
Confidence 4789999999999999999999887 4 78888875421111 111111 12234444444555565
Q ss_pred --CCcEEEEecCCCCCCCCChhHHHhhhHHHHHHHHHHHHhhcCCCcEEEEEeCChhhHHH----HHHHHCCCCCCCcEE
Q 019990 81 --DVNIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEKHAAPNCKVLVVANPANTNAL----ILKEFAPSIPAKNIT 154 (332)
Q Consensus 81 --~aDiVi~~ag~~~~~~~~~~~~~~~N~~~~~~i~~~i~~~~~~~~~viv~snp~~~~~~----~~~~~~~~~~~~~i~ 154 (332)
++|+|||+|+.......+..+.++.|+..+.++++++.+.+ . ++|++|+.. .... .+.+. ....+...|
T Consensus 113 ~~~~d~Vih~A~~~~~~~~~~~~~~~~n~~~~~~ll~a~~~~~-~--r~V~~SS~~-v~g~~~~~~~~E~-~~~~p~~~Y 187 (357)
T 2x6t_A 113 FGDVEAIFHEGACSSTTEWDGKYMMDNNYQYSKELLHYCLERE-I--PFLYASSAA-TYGGRTSDFIESR-EYEKPLNVF 187 (357)
T ss_dssp CSSCCEEEECCSCCCTTCCCHHHHHHHTHHHHHHHHHHHHHHT-C--CEEEEEEGG-GGCSCSSCCCSSG-GGCCCSSHH
T ss_pred cCCCCEEEECCcccCCccCCHHHHHHHHHHHHHHHHHHHHHcC-C--eEEEEcchH-HhCCCCCCCcCCc-CCCCCCChh
Confidence 59999999987543233445678899999999999999875 3 667666532 1000 00000 112234468
Q ss_pred EeecccHHHHHHHHHHHcCCCCCCeeeeEEEecCC
Q 019990 155 CLTRLDHNRAMGQISERLKVHVSDVKNVIIWGNHS 189 (332)
Q Consensus 155 ~~t~l~~~r~~~~~a~~~~v~~~~v~~~~V~G~hg 189 (332)
+.+|...+++...+++.+|++...+|...|||+..
T Consensus 188 ~~sK~~~E~~~~~~~~~~g~~~~ilRp~~v~Gp~~ 222 (357)
T 2x6t_A 188 GYSKFLFDEYVRQILPEANSQIVGFRYFNVYGPRE 222 (357)
T ss_dssp HHHHHHHHHHHHHHGGGCSSCEEEEEECEEESSSC
T ss_pred HHHHHHHHHHHHHHHHHcCCCEEEEecCeEECCCC
Confidence 88999999998888888899999999999999753
|
| >1y1p_A ARII, aldehyde reductase II; rossmann fold, short chain dehydrogenase reductase, oxidoreductase; HET: NMN AMP; 1.60A {Sporidiobolus salmonicolor} SCOP: c.2.1.2 PDB: 1ujm_A* 1zze_A | Back alignment and structure |
|---|
Probab=99.28 E-value=1.2e-11 Score=113.60 Aligned_cols=175 Identities=11% Similarity=0.057 Sum_probs=111.2
Q ss_pred CCcEEEEEcCCChhHHHHHHHHHhcccCCCCCCeEEEEEecccchhhhhhhHhhhhh---hcc-CC-ccceEEeCCHHHH
Q 019990 4 NPLRVLVTGAAGQIGYALVPMIARGIMLGPDQPVILHMLDIEPAAEALNGVKMELID---AAF-PL-LKGVVATTDVVEA 78 (332)
Q Consensus 4 ~~~kI~VtGaaG~IGs~l~~~L~~~~~~~~~~~~~i~l~D~~~~~~~~~~~~~dl~~---~~~-~~-~~~v~~~~~~~~a 78 (332)
+.++|+||||+||||++++..|++.|. +|++++++.. ........+.. ... .. ..|+....++.++
T Consensus 10 ~~~~vlVTGatG~iG~~l~~~L~~~g~-------~V~~~~r~~~--~~~~~~~~~~~~~~~~~~~~~~~D~~d~~~~~~~ 80 (342)
T 1y1p_A 10 EGSLVLVTGANGFVASHVVEQLLEHGY-------KVRGTARSAS--KLANLQKRWDAKYPGRFETAVVEDMLKQGAYDEV 80 (342)
T ss_dssp TTCEEEEETTTSHHHHHHHHHHHHTTC-------EEEEEESSHH--HHHHHHHHHHHHSTTTEEEEECSCTTSTTTTTTT
T ss_pred CCCEEEEECCccHHHHHHHHHHHHCCC-------EEEEEeCCcc--cHHHHHHHhhccCCCceEEEEecCCcChHHHHHH
Confidence 357999999999999999999998875 8999987532 22111111110 001 11 2344444456667
Q ss_pred hCCCcEEEEecCCCCCCCCChhHHHhhhHHHHHHHHHHHHhhcCCCcEEEEEeCChhhHHH-------HHHHH-------
Q 019990 79 CKDVNIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEKHAAPNCKVLVVANPANTNAL-------ILKEF------- 144 (332)
Q Consensus 79 ~~~aDiVi~~ag~~~~~~~~~~~~~~~N~~~~~~i~~~i~~~~~~~~~viv~snp~~~~~~-------~~~~~------- 144 (332)
++++|+|||+|+..... .+..+.+..|+.++.++++++.+.. ...++|++|+....... .+.+.
T Consensus 81 ~~~~d~vih~A~~~~~~-~~~~~~~~~n~~g~~~ll~~~~~~~-~~~~iv~~SS~~~~~~~~~~~~~~~~~E~~~~~~~~ 158 (342)
T 1y1p_A 81 IKGAAGVAHIASVVSFS-NKYDEVVTPAIGGTLNALRAAAATP-SVKRFVLTSSTVSALIPKPNVEGIYLDEKSWNLESI 158 (342)
T ss_dssp TTTCSEEEECCCCCSCC-SCHHHHHHHHHHHHHHHHHHHHTCT-TCCEEEEECCGGGTCCCCTTCCCCEECTTCCCHHHH
T ss_pred HcCCCEEEEeCCCCCCC-CCHHHHHHHHHHHHHHHHHHHHhCC-CCcEEEEeccHHHhcCCCCCCCCcccCccccCchhh
Confidence 78999999999875432 3345678899999999999998532 12467777753211000 00000
Q ss_pred -----CCC---CCCCcEEEeecccHHHHHHHHHHHc--CCCCCCeeeeEEEecCC
Q 019990 145 -----APS---IPAKNITCLTRLDHNRAMGQISERL--KVHVSDVKNVIIWGNHS 189 (332)
Q Consensus 145 -----~~~---~~~~~i~~~t~l~~~r~~~~~a~~~--~v~~~~v~~~~V~G~hg 189 (332)
... .++...|+.+|...+++...+++.+ ++....+|...|||+..
T Consensus 159 ~~~~~~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~~~~~~~~~~~rp~~v~g~~~ 213 (342)
T 1y1p_A 159 DKAKTLPESDPQKSLWVYAASKTEAELAAWKFMDENKPHFTLNAVLPNYTIGTIF 213 (342)
T ss_dssp HHHHHSCTTSTTHHHHHHHHHHHHHHHHHHHHHHHHCCSSEEEEEEESEEECCCS
T ss_pred hhhccccccccccchHHHHHHHHHHHHHHHHHHHhcCCCceEEEEcCCceECCCC
Confidence 000 0112358889999999988888876 56666788888999753
|
| >1eq2_A ADP-L-glycero-D-mannoheptose 6-epimerase; N-terminal domain rossmann fold, C-terminal mixed alpha/beta domain; HET: NAP ADQ; 2.00A {Escherichia coli} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=99.28 E-value=1.2e-11 Score=112.16 Aligned_cols=165 Identities=15% Similarity=0.151 Sum_probs=111.7
Q ss_pred EEEEEcCCChhHHHHHHHHHhcc-cCCCCCCeEEEEEecccchhhhhhhHhhhhhhccCCccceEEeCCHHHHhCC----
Q 019990 7 RVLVTGAAGQIGYALVPMIARGI-MLGPDQPVILHMLDIEPAAEALNGVKMELIDAAFPLLKGVVATTDVVEACKD---- 81 (332)
Q Consensus 7 kI~VtGaaG~IGs~l~~~L~~~~-~~~~~~~~~i~l~D~~~~~~~~~~~~~dl~~~~~~~~~~v~~~~~~~~a~~~---- 81 (332)
||+||||+||||++++..|++.| . +|+++++....... ..+.... ...++.....+.+++++
T Consensus 1 ~vlVtGatG~iG~~l~~~L~~~g~~-------~V~~~~r~~~~~~~----~~~~~~~--~~~d~~~~~~~~~~~~~~~~~ 67 (310)
T 1eq2_A 1 MIIVTGGAGFIGSNIVKALNDKGIT-------DILVVDNLKDGTKF----VNLVDLN--IADYMDKEDFLIQIMAGEEFG 67 (310)
T ss_dssp CEEEETTTSHHHHHHHHHHHTTTCC-------CEEEEECCSSGGGG----HHHHTSC--CSEEEEHHHHHHHHHTTCCCS
T ss_pred CEEEEcCccHHHHHHHHHHHHCCCc-------EEEEEccCCCCchh----hhcCcce--eccccccHHHHHHHHhccccC
Confidence 58999999999999999999887 4 78888875421111 1121111 22345444445566664
Q ss_pred -CcEEEEecCCCCCCCCChhHHHhhhHHHHHHHHHHHHhhcCCCcEEEEEeCChhhHHH----HHHHHCCCCCCCcEEEe
Q 019990 82 -VNIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEKHAAPNCKVLVVANPANTNAL----ILKEFAPSIPAKNITCL 156 (332)
Q Consensus 82 -aDiVi~~ag~~~~~~~~~~~~~~~N~~~~~~i~~~i~~~~~~~~~viv~snp~~~~~~----~~~~~~~~~~~~~i~~~ 156 (332)
+|+|||+|+.......+..+.+..|+..+.++++++.+.+ . ++|++|+.. .... .+.+. ....|...|+.
T Consensus 68 ~~d~vi~~a~~~~~~~~~~~~~~~~n~~~~~~l~~a~~~~~-~--~~v~~SS~~-v~g~~~~~~~~E~-~~~~p~~~Y~~ 142 (310)
T 1eq2_A 68 DVEAIFHEGACSSTTEWDGKYMMDNNYQYSKELLHYCLERE-I--PFLYASSAA-TYGGRTSDFIESR-EYEKPLNVYGY 142 (310)
T ss_dssp SCCEEEECCSCCCTTCCCHHHHHHHTHHHHHHHHHHHHHHT-C--CEEEEEEGG-GGTTCCSCBCSSG-GGCCCSSHHHH
T ss_pred CCcEEEECcccccCcccCHHHHHHHHHHHHHHHHHHHHHcC-C--eEEEEeeHH-HhCCCCCCCCCCC-CCCCCCChhHH
Confidence 9999999987543333445678899999999999999875 3 667666532 1000 00000 11223446788
Q ss_pred ecccHHHHHHHHHHHcCCCCCCeeeeEEEecCC
Q 019990 157 TRLDHNRAMGQISERLKVHVSDVKNVIIWGNHS 189 (332)
Q Consensus 157 t~l~~~r~~~~~a~~~~v~~~~v~~~~V~G~hg 189 (332)
++...+++...+++..|++...+|...|||+..
T Consensus 143 sK~~~e~~~~~~~~~~g~~~~~lrp~~v~G~~~ 175 (310)
T 1eq2_A 143 SKFLFDEYVRQILPEANSQIVGFRYFNVYGPRE 175 (310)
T ss_dssp HHHHHHHHHHHHGGGCSSCEEEEEECEEESSSC
T ss_pred HHHHHHHHHHHHHHHcCCCEEEEeCCcEECcCC
Confidence 899999998888888899999999999999753
|
| >1rkx_A CDP-glucose-4,6-dehydratase; SDR, lyase; HET: NAD; 1.80A {Yersinia pseudotuberculosis} SCOP: c.2.1.2 PDB: 1wvg_A* | Back alignment and structure |
|---|
Probab=99.28 E-value=1.5e-12 Score=120.70 Aligned_cols=174 Identities=12% Similarity=0.048 Sum_probs=112.0
Q ss_pred CCcEEEEEcCCChhHHHHHHHHHhcccCCCCCCeEEEEEecccchhhhhhhHhhhh-hhcc-CCccceEEeCCHHHHhCC
Q 019990 4 NPLRVLVTGAAGQIGYALVPMIARGIMLGPDQPVILHMLDIEPAAEALNGVKMELI-DAAF-PLLKGVVATTDVVEACKD 81 (332)
Q Consensus 4 ~~~kI~VtGaaG~IGs~l~~~L~~~~~~~~~~~~~i~l~D~~~~~~~~~~~~~dl~-~~~~-~~~~~v~~~~~~~~a~~~ 81 (332)
++|+|+||||+||||++++..|++.|. +|++++++.. ........+. .... ....|+....++.+++++
T Consensus 8 ~~~~vlVtGatG~iG~~l~~~L~~~g~-------~V~~~~r~~~--~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~ 78 (357)
T 1rkx_A 8 QGKRVFVTGHTGFKGGWLSLWLQTMGA-------TVKGYSLTAP--TVPSLFETARVADGMQSEIGDIRDQNKLLESIRE 78 (357)
T ss_dssp TTCEEEEETTTSHHHHHHHHHHHHTTC-------EEEEEESSCS--SSSCHHHHTTTTTTSEEEECCTTCHHHHHHHHHH
T ss_pred CCCEEEEECCCchHHHHHHHHHHhCCC-------eEEEEeCCCc--ccchhhHhhccCCceEEEEccccCHHHHHHHHHh
Confidence 357999999999999999999998875 8999998542 1111111110 0000 112344333445566665
Q ss_pred --CcEEEEecCCCCCC--CCChhHHHhhhHHHHHHHHHHHHhhcCCCcEEEEEeCChhhHHH-----HHHHHCCCCCCCc
Q 019990 82 --VNIAVMVGGFPRKE--GMERKDVMSKNVSIYKAQASALEKHAAPNCKVLVVANPANTNAL-----ILKEFAPSIPAKN 152 (332)
Q Consensus 82 --aDiVi~~ag~~~~~--~~~~~~~~~~N~~~~~~i~~~i~~~~~~~~~viv~snp~~~~~~-----~~~~~~~~~~~~~ 152 (332)
+|+|||+||.+... .....+.+..|+..+.++++++.+.+ ...++|++|+.. +... ...+. ...++..
T Consensus 79 ~~~d~vih~A~~~~~~~~~~~~~~~~~~n~~~~~~l~~a~~~~~-~~~~~v~~SS~~-vyg~~~~~~~~~E~-~~~~~~~ 155 (357)
T 1rkx_A 79 FQPEIVFHMAAQPLVRLSYSEPVETYSTNVMGTVYLLEAIRHVG-GVKAVVNITSDK-CYDNKEWIWGYREN-EAMGGYD 155 (357)
T ss_dssp HCCSEEEECCSCCCHHHHHHCHHHHHHHHTHHHHHHHHHHHHHC-CCCEEEEECCGG-GBCCCCSSSCBCTT-SCBCCSS
T ss_pred cCCCEEEECCCCcccccchhCHHHHHHHHHHHHHHHHHHHHHhC-CCCeEEEecCHH-HhCCCCcCCCCCCC-CCCCCCC
Confidence 89999999864211 11234567889999999999999874 234667776531 1000 00010 1233445
Q ss_pred EEEeecccHHHHHHHHHHHc---------CCCCCCeeeeEEEecCC
Q 019990 153 ITCLTRLDHNRAMGQISERL---------KVHVSDVKNVIIWGNHS 189 (332)
Q Consensus 153 i~~~t~l~~~r~~~~~a~~~---------~v~~~~v~~~~V~G~hg 189 (332)
.|+.+|...+++...+++.+ |++...+|...|||+..
T Consensus 156 ~Y~~sK~~~e~~~~~~~~~~~~~~~~~~~gi~~~~lrp~~v~G~~~ 201 (357)
T 1rkx_A 156 PYSNSKGCAELVTSSYRNSFFNPANYGQHGTAVATVRAGNVIGGGD 201 (357)
T ss_dssp HHHHHHHHHHHHHHHHHHHHSCGGGHHHHCCEEEEEECCCEECTTC
T ss_pred ccHHHHHHHHHHHHHHHHHHhhhhccccCCceEEEEeeceeeCCCC
Confidence 68889999999888888766 89999999999999753
|
| >2p5y_A UDP-glucose 4-epimerase; TTHA0591, structural genomics, PSI; HET: NAD; 1.92A {Thermus thermophilus HB8} PDB: 2p5u_A* | Back alignment and structure |
|---|
Probab=99.28 E-value=1.3e-12 Score=118.75 Aligned_cols=169 Identities=12% Similarity=0.032 Sum_probs=110.3
Q ss_pred cEEEEEcCCChhHHHHHHHHHhcccCCCCCCeEEEEEecccchhhhhhhHhhhhhhccCCccceEEeCCHHHHhC--CCc
Q 019990 6 LRVLVTGAAGQIGYALVPMIARGIMLGPDQPVILHMLDIEPAAEALNGVKMELIDAAFPLLKGVVATTDVVEACK--DVN 83 (332)
Q Consensus 6 ~kI~VtGaaG~IGs~l~~~L~~~~~~~~~~~~~i~l~D~~~~~~~~~~~~~dl~~~~~~~~~~v~~~~~~~~a~~--~aD 83 (332)
|||+||||+||||++++..|++.|. +|+++|+.... ... .+.........|+....++.++++ ++|
T Consensus 1 m~vlVTGatG~iG~~l~~~L~~~G~-------~V~~~~r~~~~-~~~----~~~~~~~~~~~Dl~~~~~~~~~~~~~~~d 68 (311)
T 2p5y_A 1 MRVLVTGGAGFIGSHIVEDLLARGL-------EVAVLDNLATG-KRE----NVPKGVPFFRVDLRDKEGVERAFREFRPT 68 (311)
T ss_dssp CEEEEETTTSHHHHHHHHHHHTTTC-------EEEEECCCSSC-CGG----GSCTTCCEECCCTTCHHHHHHHHHHHCCS
T ss_pred CEEEEEeCCcHHHHHHHHHHHHCCC-------EEEEEECCCcC-chh----hcccCeEEEECCCCCHHHHHHHHHhcCCC
Confidence 4799999999999999999998875 88888874211 111 111100011234444444556676 899
Q ss_pred EEEEecCCCCCC--CCChhHHHhhhHHHHHHHHHHHHhhcCCCcEEEEEeCChhhHHH-----HHHHHCCCCCCCcEEEe
Q 019990 84 IAVMVGGFPRKE--GMERKDVMSKNVSIYKAQASALEKHAAPNCKVLVVANPANTNAL-----ILKEFAPSIPAKNITCL 156 (332)
Q Consensus 84 iVi~~ag~~~~~--~~~~~~~~~~N~~~~~~i~~~i~~~~~~~~~viv~snp~~~~~~-----~~~~~~~~~~~~~i~~~ 156 (332)
+|||+|+..... ..+....++.|+..+.++++++.+.+ . .++|++|+....... ...+. ...++...|+.
T Consensus 69 ~vi~~a~~~~~~~~~~~~~~~~~~N~~g~~~l~~a~~~~~-~-~~iv~~SS~~~~~g~~~~~~~~~E~-~~~~~~~~Y~~ 145 (311)
T 2p5y_A 69 HVSHQAAQASVKVSVEDPVLDFEVNLLGGLNLLEACRQYG-V-EKLVFASTGGAIYGEVPEGERAEET-WPPRPKSPYAA 145 (311)
T ss_dssp EEEECCSCCCHHHHHHCHHHHHHHHTHHHHHHHHHHHHTT-C-SEEEEEEEHHHHHCCCCTTCCBCTT-SCCCCCSHHHH
T ss_pred EEEECccccCchhhhhCHHHHHHHHHHHHHHHHHHHHHhC-C-CEEEEeCCChhhcCCCCCCCCcCCC-CCCCCCChHHH
Confidence 999999864211 01234567889999999999998764 2 366766653111000 00010 11223446888
Q ss_pred ecccHHHHHHHHHHHcCCCCCCeeeeEEEecCC
Q 019990 157 TRLDHNRAMGQISERLKVHVSDVKNVIIWGNHS 189 (332)
Q Consensus 157 t~l~~~r~~~~~a~~~~v~~~~v~~~~V~G~hg 189 (332)
+|...+++...+++.+|++...+|..+|||+..
T Consensus 146 sK~~~e~~~~~~~~~~~~~~~~lrp~~v~Gp~~ 178 (311)
T 2p5y_A 146 SKAAFEHYLSVYGQSYGLKWVSLRYGNVYGPRQ 178 (311)
T ss_dssp HHHHHHHHHHHHHHHHCCCEEEEEECEEECTTC
T ss_pred HHHHHHHHHHHHHHHcCCCEEEEeeccccCcCC
Confidence 999999998888888999999999999999743
|
| >1r6d_A TDP-glucose-4,6-dehydratase; rossmann fold, short-chain dehydrogenase/reductase, lyase; HET: NAD DAU; 1.35A {Streptomyces venezuelae} SCOP: c.2.1.2 PDB: 1r66_A* | Back alignment and structure |
|---|
Probab=99.27 E-value=6.5e-12 Score=115.43 Aligned_cols=172 Identities=13% Similarity=0.060 Sum_probs=111.7
Q ss_pred cEEEEEcCCChhHHHHHHHHHhc---c---cCCCCCCeEEEEEecccchhhhhhhHhhhhh-hcc-CCccceEEeCCHHH
Q 019990 6 LRVLVTGAAGQIGYALVPMIARG---I---MLGPDQPVILHMLDIEPAAEALNGVKMELID-AAF-PLLKGVVATTDVVE 77 (332)
Q Consensus 6 ~kI~VtGaaG~IGs~l~~~L~~~---~---~~~~~~~~~i~l~D~~~~~~~~~~~~~dl~~-~~~-~~~~~v~~~~~~~~ 77 (332)
|||+||||+||||++++..|++. + . +|+++|+........ ...++.. ... ....|+....++.+
T Consensus 1 M~vlVTGatG~iG~~l~~~L~~~~~~g~~~~-------~V~~~~r~~~~~~~~-~~~~~~~~~~~~~~~~Dl~d~~~~~~ 72 (337)
T 1r6d_A 1 MRLLVTGGAGFIGSHFVRQLLAGAYPDVPAD-------EVIVLDSLTYAGNRA-NLAPVDADPRLRFVHGDIRDAGLLAR 72 (337)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTSCTTSCCS-------EEEEEECCCTTCCGG-GGGGGTTCTTEEEEECCTTCHHHHHH
T ss_pred CeEEEECCccHHHHHHHHHHHhhhcCCCCce-------EEEEEECCCccCchh-hhhhcccCCCeEEEEcCCCCHHHHHH
Confidence 47999999999999999999985 5 4 888888743110011 0111110 000 11234443445667
Q ss_pred HhCCCcEEEEecCCCCCC--CCChhHHHhhhHHHHHHHHHHHHhhcCCCcEEEEEeCChhhHH----HHHHHHCCCCCCC
Q 019990 78 ACKDVNIAVMVGGFPRKE--GMERKDVMSKNVSIYKAQASALEKHAAPNCKVLVVANPANTNA----LILKEFAPSIPAK 151 (332)
Q Consensus 78 a~~~aDiVi~~ag~~~~~--~~~~~~~~~~N~~~~~~i~~~i~~~~~~~~~viv~snp~~~~~----~~~~~~~~~~~~~ 151 (332)
++.++|+|||+||..... ..+..+.++.|+..+.++++++.+.+ . .++|++|+.. +.. ..+.+. ...++.
T Consensus 73 ~~~~~d~Vih~A~~~~~~~~~~~~~~~~~~Nv~~~~~l~~a~~~~~-~-~~~v~~SS~~-vyg~~~~~~~~E~-~~~~~~ 148 (337)
T 1r6d_A 73 ELRGVDAIVHFAAESHVDRSIAGASVFTETNVQGTQTLLQCAVDAG-V-GRVVHVSTNQ-VYGSIDSGSWTES-SPLEPN 148 (337)
T ss_dssp HTTTCCEEEECCSCCCHHHHHHCCHHHHHHHTHHHHHHHHHHHHTT-C-CEEEEEEEGG-GGCCCSSSCBCTT-SCCCCC
T ss_pred HhcCCCEEEECCCccCchhhhhCHHHHHHHHHHHHHHHHHHHHHcC-C-CEEEEecchH-HhCCCCCCCCCCC-CCCCCC
Confidence 778999999999864310 01224577889999999999999874 2 3667666421 100 000110 123444
Q ss_pred cEEEeecccHHHHHHHHHHHcCCCCCCeeeeEEEecCC
Q 019990 152 NITCLTRLDHNRAMGQISERLKVHVSDVKNVIIWGNHS 189 (332)
Q Consensus 152 ~i~~~t~l~~~r~~~~~a~~~~v~~~~v~~~~V~G~hg 189 (332)
..|+.+|...+++...+++.++++...+|...|||+..
T Consensus 149 ~~Y~~sK~~~e~~~~~~~~~~g~~~~ilrp~~v~G~~~ 186 (337)
T 1r6d_A 149 SPYAASKAGSDLVARAYHRTYGLDVRITRCCNNYGPYQ 186 (337)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHCCCEEEEEECEEECTTC
T ss_pred CchHHHHHHHHHHHHHHHHHHCCCEEEEEeeeeECCCC
Confidence 56888999999998888888999999999999999754
|
| >1kew_A RMLB;, DTDP-D-glucose 4,6-dehydratase; rossmann fold, lyase; HET: TYD NAD; 1.80A {Salmonella enterica subsp} SCOP: c.2.1.2 PDB: 1g1a_A* 1keu_A* 1bxk_A* | Back alignment and structure |
|---|
Probab=99.27 E-value=5.1e-12 Score=117.20 Aligned_cols=174 Identities=11% Similarity=0.111 Sum_probs=112.2
Q ss_pred cEEEEEcCCChhHHHHHHHHHhc-ccCCCCCCeEEEEEecccchhhhhhhHhhhhh-hcc-CCccceEEeCCHHHHhC--
Q 019990 6 LRVLVTGAAGQIGYALVPMIARG-IMLGPDQPVILHMLDIEPAAEALNGVKMELID-AAF-PLLKGVVATTDVVEACK-- 80 (332)
Q Consensus 6 ~kI~VtGaaG~IGs~l~~~L~~~-~~~~~~~~~~i~l~D~~~~~~~~~~~~~dl~~-~~~-~~~~~v~~~~~~~~a~~-- 80 (332)
|||+||||+||||++++..|++. +. +|+++|+......... ..++.. ... ....|+....++.++++
T Consensus 1 MkvlVTGasG~iG~~l~~~L~~~~g~-------~V~~~~r~~~~~~~~~-~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~ 72 (361)
T 1kew_A 1 MKILITGGAGFIGSAVVRHIIKNTQD-------TVVNIDKLTYAGNLES-LSDISESNRYNFEHADICDSAEITRIFEQY 72 (361)
T ss_dssp CEEEEESTTSHHHHHHHHHHHHHCSC-------EEEEEECCCTTCCGGG-GTTTTTCTTEEEEECCTTCHHHHHHHHHHH
T ss_pred CEEEEECCCchHhHHHHHHHHhcCCC-------eEEEEecCCCCCchhh-hhhhhcCCCeEEEECCCCCHHHHHHHHhhc
Confidence 47999999999999999999886 54 8888887531111111 111111 000 11234443445556676
Q ss_pred CCcEEEEecCCCCCC--CCChhHHHhhhHHHHHHHHHHHHhh--cCC-----CcEEEEEeCChhhHHH------------
Q 019990 81 DVNIAVMVGGFPRKE--GMERKDVMSKNVSIYKAQASALEKH--AAP-----NCKVLVVANPANTNAL------------ 139 (332)
Q Consensus 81 ~aDiVi~~ag~~~~~--~~~~~~~~~~N~~~~~~i~~~i~~~--~~~-----~~~viv~snp~~~~~~------------ 139 (332)
++|+|||+||..... ..+..+.+..|+..+.++++++.+. +.+ .+++|++|+.. +...
T Consensus 73 ~~d~vih~A~~~~~~~~~~~~~~~~~~Nv~g~~~l~~a~~~~~~~v~~~~~~~~~iv~~SS~~-v~g~~~~~~~~~~~~~ 151 (361)
T 1kew_A 73 QPDAVMHLAAESHVDRSITGPAAFIETNIVGTYALLEVARKYWSALGEDKKNNFRFHHISTDE-VYGDLPHPDEVENSVT 151 (361)
T ss_dssp CCSEEEECCSCCCHHHHHHCTHHHHHHHTHHHHHHHHHHHHHHHTSCHHHHHHCEEEEEEEGG-GGCCCCCGGGSCTTSC
T ss_pred CCCEEEECCCCcChhhhhhCHHHHHHHHHHHHHHHHHHHHHhccCcccccccCceEEEeCCHH-HhCCCccccccccccc
Confidence 899999999875310 0122457788999999999999887 411 13667766521 1000
Q ss_pred --HHHHHCCCCCCCcEEEeecccHHHHHHHHHHHcCCCCCCeeeeEEEecCC
Q 019990 140 --ILKEFAPSIPAKNITCLTRLDHNRAMGQISERLKVHVSDVKNVIIWGNHS 189 (332)
Q Consensus 140 --~~~~~~~~~~~~~i~~~t~l~~~r~~~~~a~~~~v~~~~v~~~~V~G~hg 189 (332)
.+.+. ...++...|+.+|...+++...+++.+|++...+|...|||+..
T Consensus 152 ~~~~~E~-~~~~~~~~Y~~sK~~~e~~~~~~~~~~gi~~~~vrp~~v~G~~~ 202 (361)
T 1kew_A 152 LPLFTET-TAYAPSSPYSASKASSDHLVRAWRRTYGLPTIVTNCSNNYGPYH 202 (361)
T ss_dssp CCCBCTT-SCCCCCSHHHHHHHHHHHHHHHHHHHHCCCEEEEEECEEESTTC
T ss_pred CCCCCCC-CCCCCCCccHHHHHHHHHHHHHHHHHhCCcEEEEeeceeECCCC
Confidence 00111 12344457888999999999888888999999999999999854
|
| >3slg_A PBGP3 protein; structural genomics, seattle structural genomics center for infectious disease, ssgcid, melioidosis, glanders; 2.10A {Burkholderia pseudomallei} | Back alignment and structure |
|---|
Probab=99.27 E-value=1.1e-12 Score=122.38 Aligned_cols=170 Identities=11% Similarity=0.066 Sum_probs=112.1
Q ss_pred CCcEEEEEcCCChhHHHHHHHHHhc-ccCCCCCCeEEEEEecccchhhhhhhHhhhhhhccCCccceE-EeCCHHHHhCC
Q 019990 4 NPLRVLVTGAAGQIGYALVPMIARG-IMLGPDQPVILHMLDIEPAAEALNGVKMELIDAAFPLLKGVV-ATTDVVEACKD 81 (332)
Q Consensus 4 ~~~kI~VtGaaG~IGs~l~~~L~~~-~~~~~~~~~~i~l~D~~~~~~~~~~~~~dl~~~~~~~~~~v~-~~~~~~~a~~~ 81 (332)
+||||+||||+||||++++..|++. ++ +|+.+++... ..... .+.... .....|+. ....+.+++++
T Consensus 23 ~~~~vlVtGatG~iG~~l~~~L~~~~g~-------~V~~~~r~~~--~~~~~-~~~~~v-~~~~~Dl~~d~~~~~~~~~~ 91 (372)
T 3slg_A 23 KAKKVLILGVNGFIGHHLSKRILETTDW-------EVFGMDMQTD--RLGDL-VKHERM-HFFEGDITINKEWVEYHVKK 91 (372)
T ss_dssp CCCEEEEESCSSHHHHHHHHHHHHHSSC-------EEEEEESCCT--TTGGG-GGSTTE-EEEECCTTTCHHHHHHHHHH
T ss_pred CCCEEEEECCCChHHHHHHHHHHhCCCC-------EEEEEeCChh--hhhhh-ccCCCe-EEEeCccCCCHHHHHHHhcc
Confidence 4689999999999999999999987 65 8999998642 12111 000000 01123444 34456667889
Q ss_pred CcEEEEecCCCCCCC--CChhHHHhhhHHHHHHHHHHHHhhcCCCcEEEEEeCChhhHHH----HHHHHCCCC------C
Q 019990 82 VNIAVMVGGFPRKEG--MERKDVMSKNVSIYKAQASALEKHAAPNCKVLVVANPANTNAL----ILKEFAPSI------P 149 (332)
Q Consensus 82 aDiVi~~ag~~~~~~--~~~~~~~~~N~~~~~~i~~~i~~~~~~~~~viv~snp~~~~~~----~~~~~~~~~------~ 149 (332)
+|+|||+|+...... .+..+.+..|+..+.++++++++.+ .++|++|+. .+... .+.+....+ +
T Consensus 92 ~d~Vih~A~~~~~~~~~~~~~~~~~~nv~~~~~ll~a~~~~~---~~~v~~SS~-~vyg~~~~~~~~e~~~~~~~~p~~~ 167 (372)
T 3slg_A 92 CDVILPLVAIATPATYVKQPLRVFELDFEANLPIVRSAVKYG---KHLVFPSTS-EVYGMCADEQFDPDASALTYGPINK 167 (372)
T ss_dssp CSEEEECBCCCCHHHHHHCHHHHHHHHTTTTHHHHHHHHHHT---CEEEEECCG-GGGBSCCCSSBCTTTCCEEECCTTC
T ss_pred CCEEEEcCccccHHHHhhCHHHHHHHHHHHHHHHHHHHHHhC---CcEEEeCcH-HHhCCCCCCCCCccccccccCCCCC
Confidence 999999998653211 1234567889999999999999885 367777752 21100 000000000 2
Q ss_pred CCcEEEeecccHHHHHHHHHHHcCCCCCCeeeeEEEecCC
Q 019990 150 AKNITCLTRLDHNRAMGQISERLKVHVSDVKNVIIWGNHS 189 (332)
Q Consensus 150 ~~~i~~~t~l~~~r~~~~~a~~~~v~~~~v~~~~V~G~hg 189 (332)
|...|+.+|...+++...+++. +++...+|...|||+..
T Consensus 168 p~~~Y~~sK~~~E~~~~~~~~~-g~~~~ilRp~~v~G~~~ 206 (372)
T 3slg_A 168 PRWIYACSKQLMDRVIWGYGME-GLNFTLFRPFNWIGPGL 206 (372)
T ss_dssp TTHHHHHHHHHHHHHHHHHHTT-TCEEEEEEECSEECSSC
T ss_pred CCCcHHHHHHHHHHHHHHHHHC-CCCEEEEccccccCCCc
Confidence 2336888999999988888877 99999999999999853
|
| >2gn4_A FLAA1 protein, UDP-GLCNAC C6 dehydratase; rossmann fold, TYK triad, SDR, enzyme, NADP, NADPH, lyase; HET: NDP UD1 MES; 1.90A {Helicobacter pylori} PDB: 2gn6_A* 2gn8_A* 2gn9_A* 2gna_A* | Back alignment and structure |
|---|
Probab=99.24 E-value=5.3e-12 Score=116.92 Aligned_cols=173 Identities=14% Similarity=0.158 Sum_probs=116.8
Q ss_pred CCcEEEEEcCCChhHHHHHHHHHhc-ccCCCCCCeEEEEEecccchhhhhhhHhhhhhhcc-CCccceEEeCCHHHHhCC
Q 019990 4 NPLRVLVTGAAGQIGYALVPMIARG-IMLGPDQPVILHMLDIEPAAEALNGVKMELIDAAF-PLLKGVVATTDVVEACKD 81 (332)
Q Consensus 4 ~~~kI~VtGaaG~IGs~l~~~L~~~-~~~~~~~~~~i~l~D~~~~~~~~~~~~~dl~~~~~-~~~~~v~~~~~~~~a~~~ 81 (332)
++++|+||||+|+||++++..|++. |. .+|++++++.. ........+..... ....|+.....+.+++++
T Consensus 20 ~~k~vlVTGatG~iG~~l~~~L~~~~g~------~~V~~~~r~~~--~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~~ 91 (344)
T 2gn4_A 20 DNQTILITGGTGSFGKCFVRKVLDTTNA------KKIIVYSRDEL--KQSEMAMEFNDPRMRFFIGDVRDLERLNYALEG 91 (344)
T ss_dssp TTCEEEEETTTSHHHHHHHHHHHHHCCC------SEEEEEESCHH--HHHHHHHHHCCTTEEEEECCTTCHHHHHHHTTT
T ss_pred CCCEEEEECCCcHHHHHHHHHHHhhCCC------CEEEEEECChh--hHHHHHHHhcCCCEEEEECCCCCHHHHHHHHhc
Confidence 3579999999999999999999987 63 27899998532 22222222211111 122455544556778899
Q ss_pred CcEEEEecCCCCCC--CCChhHHHhhhHHHHHHHHHHHHhhcCCCcEEEEEeCChhhHHHHHHHHCCCCCCCcEEEeecc
Q 019990 82 VNIAVMVGGFPRKE--GMERKDVMSKNVSIYKAQASALEKHAAPNCKVLVVANPANTNALILKEFAPSIPAKNITCLTRL 159 (332)
Q Consensus 82 aDiVi~~ag~~~~~--~~~~~~~~~~N~~~~~~i~~~i~~~~~~~~~viv~snp~~~~~~~~~~~~~~~~~~~i~~~t~l 159 (332)
+|+|||+||....+ .....+.++.|+.++.++++++.+.+ . .++|++|+-. .+.|...|+.+|.
T Consensus 92 ~D~Vih~Aa~~~~~~~~~~~~~~~~~Nv~gt~~l~~aa~~~~-v-~~~V~~SS~~------------~~~p~~~Y~~sK~ 157 (344)
T 2gn4_A 92 VDICIHAAALKHVPIAEYNPLECIKTNIMGASNVINACLKNA-I-SQVIALSTDK------------AANPINLYGATKL 157 (344)
T ss_dssp CSEEEECCCCCCHHHHHHSHHHHHHHHHHHHHHHHHHHHHTT-C-SEEEEECCGG------------GSSCCSHHHHHHH
T ss_pred CCEEEECCCCCCCCchhcCHHHHHHHHHHHHHHHHHHHHhCC-C-CEEEEecCCc------------cCCCccHHHHHHH
Confidence 99999999875321 11234578899999999999999875 2 3667766521 1234456788888
Q ss_pred cHHHHHHHHHHH---cCCCCCCeeeeEEEecCCCceeecccCc
Q 019990 160 DHNRAMGQISER---LKVHVSDVKNVIIWGNHSSTQYPDVNHA 199 (332)
Q Consensus 160 ~~~r~~~~~a~~---~~v~~~~v~~~~V~G~hg~~~v~~~s~~ 199 (332)
..+++...+++. .|++...+|..+|+|+.+ +.+|.|...
T Consensus 158 ~~E~~~~~~~~~~~~~g~~~~~vRpg~v~g~~~-~~i~~~~~~ 199 (344)
T 2gn4_A 158 CSDKLFVSANNFKGSSQTQFSVVRYGNVVGSRG-SVVPFFKKL 199 (344)
T ss_dssp HHHHHHHHGGGCCCSSCCEEEEECCCEETTCTT-SHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCCcEEEEEEeccEECCCC-CHHHHHHHH
Confidence 888887777654 467888889889999754 456665443
|
| >2z1m_A GDP-D-mannose dehydratase; short-chain dehydrogenase/reductase, lyase, structural genom NPPSFA; HET: NDP GDP; 2.00A {Aquifex aeolicus} PDB: 2z95_A* | Back alignment and structure |
|---|
Probab=99.24 E-value=1.1e-11 Score=114.06 Aligned_cols=172 Identities=10% Similarity=-0.041 Sum_probs=111.9
Q ss_pred CcEEEEEcCCChhHHHHHHHHHhcccCCCCCCeEEEEEecccchhhhh-hhHhhhhh-hcc-CCccceEEeCCHHHHhCC
Q 019990 5 PLRVLVTGAAGQIGYALVPMIARGIMLGPDQPVILHMLDIEPAAEALN-GVKMELID-AAF-PLLKGVVATTDVVEACKD 81 (332)
Q Consensus 5 ~~kI~VtGaaG~IGs~l~~~L~~~~~~~~~~~~~i~l~D~~~~~~~~~-~~~~dl~~-~~~-~~~~~v~~~~~~~~a~~~ 81 (332)
.++|+||||+||||++++..|++.|. +|+++|++... .. ....++.. ... ....|+....++.+++++
T Consensus 3 ~~~vlVtGatG~iG~~l~~~L~~~G~-------~V~~~~r~~~~--~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~ 73 (345)
T 2z1m_A 3 GKRALITGIRGQDGAYLAKLLLEKGY-------EVYGADRRSGE--FASWRLKELGIENDVKIIHMDLLEFSNIIRTIEK 73 (345)
T ss_dssp CCEEEEETTTSHHHHHHHHHHHHTTC-------EEEEECSCCST--TTTHHHHHTTCTTTEEECCCCTTCHHHHHHHHHH
T ss_pred CCEEEEECCCChHHHHHHHHHHHCCC-------EEEEEECCCcc--cccccHhhccccCceeEEECCCCCHHHHHHHHHh
Confidence 46899999999999999999998875 89999986421 11 01111110 001 112344444455566664
Q ss_pred --CcEEEEecCCCCCC--CCChhHHHhhhHHHHHHHHHHHHhhcCCCcEEEEEeCChhhHHH----HHHHHCCCCCCCcE
Q 019990 82 --VNIAVMVGGFPRKE--GMERKDVMSKNVSIYKAQASALEKHAAPNCKVLVVANPANTNAL----ILKEFAPSIPAKNI 153 (332)
Q Consensus 82 --aDiVi~~ag~~~~~--~~~~~~~~~~N~~~~~~i~~~i~~~~~~~~~viv~snp~~~~~~----~~~~~~~~~~~~~i 153 (332)
.|+|||+||..... ..+....+..|+..+.++++++.+.+ ...++|++|+.. +... .+.+. ...++...
T Consensus 74 ~~~d~vih~A~~~~~~~~~~~~~~~~~~Nv~g~~~l~~a~~~~~-~~~~iv~~SS~~-vyg~~~~~~~~e~-~~~~~~~~ 150 (345)
T 2z1m_A 74 VQPDEVYNLAAQSFVGVSFEQPILTAEVDAIGVLRILEALRTVK-PDTKFYQASTSE-MFGKVQEIPQTEK-TPFYPRSP 150 (345)
T ss_dssp HCCSEEEECCCCCCHHHHTTSHHHHHHHHTHHHHHHHHHHHHHC-TTCEEEEEEEGG-GGCSCSSSSBCTT-SCCCCCSH
T ss_pred cCCCEEEECCCCcchhhhhhCHHHHHHHHHHHHHHHHHHHHHhC-CCceEEEEechh-hcCCCCCCCCCcc-CCCCCCCh
Confidence 69999999874311 12344577889999999999999864 224677766531 1000 00111 22344457
Q ss_pred EEeecccHHHHHHHHHHHcCCCCCCeeeeEEEecC
Q 019990 154 TCLTRLDHNRAMGQISERLKVHVSDVKNVIIWGNH 188 (332)
Q Consensus 154 ~~~t~l~~~r~~~~~a~~~~v~~~~v~~~~V~G~h 188 (332)
|+.+|...+++...+++.++++....+.++++|+.
T Consensus 151 Y~~sK~~~e~~~~~~~~~~~~~~~~~r~~~~~gpg 185 (345)
T 2z1m_A 151 YAVAKLFGHWITVNYREAYNMFACSGILFNHESPL 185 (345)
T ss_dssp HHHHHHHHHHHHHHHHHHHCCCEEEEEECCEECTT
T ss_pred hHHHHHHHHHHHHHHHHHhCCceEeeeeeeecCCC
Confidence 88899999999888998889887777777888874
|
| >2yy7_A L-threonine dehydrogenase; thermolabIle, flavobacterium FRIG KUC-1, oxidoreductase; HET: PE8 NAD MES; 2.06A {Flavobacterium frigidimaris} | Back alignment and structure |
|---|
Probab=99.24 E-value=3.9e-12 Score=115.45 Aligned_cols=166 Identities=10% Similarity=0.064 Sum_probs=110.2
Q ss_pred cEEEEEcCCChhHHHHHHHHHhc--ccCCCCCCeEEEEEecccchhhhhhhHhhhhhhccCCccceEEeCCHHHHhC--C
Q 019990 6 LRVLVTGAAGQIGYALVPMIARG--IMLGPDQPVILHMLDIEPAAEALNGVKMELIDAAFPLLKGVVATTDVVEACK--D 81 (332)
Q Consensus 6 ~kI~VtGaaG~IGs~l~~~L~~~--~~~~~~~~~~i~l~D~~~~~~~~~~~~~dl~~~~~~~~~~v~~~~~~~~a~~--~ 81 (332)
|+|+||||+||||++++..|++. +. +|+++|++.... . +.........|+....++.++++ +
T Consensus 3 ~~vlVtGatG~iG~~l~~~L~~~~~g~-------~V~~~~r~~~~~--~-----~~~~~~~~~~D~~d~~~~~~~~~~~~ 68 (312)
T 2yy7_A 3 PKILIIGACGQIGTELTQKLRKLYGTE-------NVIASDIRKLNT--D-----VVNSGPFEVVNALDFNQIEHLVEVHK 68 (312)
T ss_dssp CCEEEETTTSHHHHHHHHHHHHHHCGG-------GEEEEESCCCSC--H-----HHHSSCEEECCTTCHHHHHHHHHHTT
T ss_pred ceEEEECCccHHHHHHHHHHHHhCCCC-------EEEEEcCCCccc--c-----ccCCCceEEecCCCHHHHHHHHhhcC
Confidence 67999999999999999999887 65 788888754211 0 11100011234443445566677 8
Q ss_pred CcEEEEecCCCCCC-CCChhHHHhhhHHHHHHHHHHHHhhcCCCcEEEEEeCChhhHH----HHHHHHCCCCCCCcEEEe
Q 019990 82 VNIAVMVGGFPRKE-GMERKDVMSKNVSIYKAQASALEKHAAPNCKVLVVANPANTNA----LILKEFAPSIPAKNITCL 156 (332)
Q Consensus 82 aDiVi~~ag~~~~~-~~~~~~~~~~N~~~~~~i~~~i~~~~~~~~~viv~snp~~~~~----~~~~~~~~~~~~~~i~~~ 156 (332)
+|+|||+|+..... ..+..+.++.|+..+.++++++++.+ . .++|++|+..-.-. ....+. ....+...|+.
T Consensus 69 ~d~vih~a~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~-~-~~~v~~SS~~~~~~~~~~~~~~e~-~~~~~~~~Y~~ 145 (312)
T 2yy7_A 69 ITDIYLMAALLSATAEKNPAFAWDLNMNSLFHVLNLAKAKK-I-KKIFWPSSIAVFGPTTPKENTPQY-TIMEPSTVYGI 145 (312)
T ss_dssp CCEEEECCCCCHHHHHHCHHHHHHHHHHHHHHHHHHHHTTS-C-SEEECCEEGGGCCTTSCSSSBCSS-CBCCCCSHHHH
T ss_pred CCEEEECCccCCCchhhChHHHHHHHHHHHHHHHHHHHHcC-C-CEEEEeccHHHhCCCCCCCCcccc-CcCCCCchhHH
Confidence 99999999864211 12234577889999999999999864 2 26666664321000 000010 11233446888
Q ss_pred ecccHHHHHHHHHHHcCCCCCCeeeeEEEecC
Q 019990 157 TRLDHNRAMGQISERLKVHVSDVKNVIIWGNH 188 (332)
Q Consensus 157 t~l~~~r~~~~~a~~~~v~~~~v~~~~V~G~h 188 (332)
+|...+++...+++.+|++...+|...|||+.
T Consensus 146 sK~~~e~~~~~~~~~~~~~~~~lrp~~v~g~~ 177 (312)
T 2yy7_A 146 SKQAGERWCEYYHNIYGVDVRSIRYPGLISWS 177 (312)
T ss_dssp HHHHHHHHHHHHHHHHCCEEECEEECEEECSS
T ss_pred HHHHHHHHHHHHHHhcCCcEEEEeCCeEecCC
Confidence 99999999888888889999999999999963
|
| >3st7_A Capsular polysaccharide synthesis enzyme CAP5F; rossmann fold, cupid domain, short-chain dehydrogenase/reduc NADPH; 2.45A {Staphylococcus aureus} PDB: 2zkl_A 3vhr_A | Back alignment and structure |
|---|
Probab=99.23 E-value=3.1e-12 Score=119.39 Aligned_cols=138 Identities=16% Similarity=0.202 Sum_probs=102.7
Q ss_pred cEEEEEcCCChhHHHHHHHHHhcccCCCCCCeEEEEEecccchhhhhhhHhhhhhhccCCccceEEeCCHHHHhCCCcEE
Q 019990 6 LRVLVTGAAGQIGYALVPMIARGIMLGPDQPVILHMLDIEPAAEALNGVKMELIDAAFPLLKGVVATTDVVEACKDVNIA 85 (332)
Q Consensus 6 ~kI~VtGaaG~IGs~l~~~L~~~~~~~~~~~~~i~l~D~~~~~~~~~~~~~dl~~~~~~~~~~v~~~~~~~~a~~~aDiV 85 (332)
|||+||||+||||++++..|++.+. .+++.+|+..+ ..++.++++++|+|
T Consensus 1 M~VlVtGatG~iG~~l~~~L~~~g~------~~v~~~d~~~d------------------------~~~l~~~~~~~d~V 50 (369)
T 3st7_A 1 MNIVITGAKGFVGKNLKADLTSTTD------HHIFEVHRQTK------------------------EEELESALLKADFI 50 (369)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHHCC------CEEEECCTTCC------------------------HHHHHHHHHHCSEE
T ss_pred CEEEEECCCCHHHHHHHHHHHhCCC------CEEEEECCCCC------------------------HHHHHHHhccCCEE
Confidence 5899999999999999999998774 27888887210 12344556789999
Q ss_pred EEecCCCCCCCCChhHHHhhhHHHHHHHHHHHHhhcCCCcEEEEEeCChhhHHHHHHHHCCCCCCCcEEEeecccHHHHH
Q 019990 86 VMVGGFPRKEGMERKDVMSKNVSIYKAQASALEKHAAPNCKVLVVANPANTNALILKEFAPSIPAKNITCLTRLDHNRAM 165 (332)
Q Consensus 86 i~~ag~~~~~~~~~~~~~~~N~~~~~~i~~~i~~~~~~~~~viv~snp~~~~~~~~~~~~~~~~~~~i~~~t~l~~~r~~ 165 (332)
||+|+..... ...+.+..|+..++++++++++.+ ...+++++|+.. . ++ ...|+.+|...+++.
T Consensus 51 ih~a~~~~~~--~~~~~~~~n~~~~~~l~~a~~~~~-~~~~~v~~Ss~~-~-----------~~-~~~Y~~sK~~~E~~~ 114 (369)
T 3st7_A 51 VHLAGVNRPE--HDKEFSLGNVSYLDHVLDILTRNT-KKPAILLSSSIQ-A-----------TQ-DNPYGESKLQGEQLL 114 (369)
T ss_dssp EECCCSBCTT--CSTTCSSSCCBHHHHHHHHHTTCS-SCCEEEEEEEGG-G-----------GS-CSHHHHHHHHHHHHH
T ss_pred EECCcCCCCC--CHHHHHHHHHHHHHHHHHHHHHhC-CCCeEEEeCchh-h-----------cC-CCCchHHHHHHHHHH
Confidence 9999875421 223466789999999999999875 333666666421 1 01 224577888889998
Q ss_pred HHHHHHcCCCCCCeeeeEEEecCC
Q 019990 166 GQISERLKVHVSDVKNVIIWGNHS 189 (332)
Q Consensus 166 ~~~a~~~~v~~~~v~~~~V~G~hg 189 (332)
..+++..+++...+|..+|||+..
T Consensus 115 ~~~~~~~g~~~~i~R~~~v~G~~~ 138 (369)
T 3st7_A 115 REYAEEYGNTVYIYRWPNLFGKWC 138 (369)
T ss_dssp HHHHHHHCCCEEEEEECEEECTTC
T ss_pred HHHHHHhCCCEEEEECCceeCCCC
Confidence 888999999999999999999754
|
| >1gy8_A UDP-galactose 4-epimerase; oxidoreductase; HET: NAD UDP; 2.0A {Trypanosoma brucei} SCOP: c.2.1.2 PDB: 2cnb_A* | Back alignment and structure |
|---|
Probab=99.22 E-value=1.5e-11 Score=115.51 Aligned_cols=172 Identities=16% Similarity=0.094 Sum_probs=110.1
Q ss_pred cEEEEEcCCChhHHHHHHHHH-hcccCCCCCCeEEEEEecccchhh-------hhhhHhhhhhh-------c---c-CCc
Q 019990 6 LRVLVTGAAGQIGYALVPMIA-RGIMLGPDQPVILHMLDIEPAAEA-------LNGVKMELIDA-------A---F-PLL 66 (332)
Q Consensus 6 ~kI~VtGaaG~IGs~l~~~L~-~~~~~~~~~~~~i~l~D~~~~~~~-------~~~~~~dl~~~-------~---~-~~~ 66 (332)
|+|+||||+||||++++..|+ +.+. +|+++|+...... .......+... . . ...
T Consensus 3 m~vlVTGatG~iG~~l~~~L~~~~g~-------~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 75 (397)
T 1gy8_A 3 MRVLVCGGAGYIGSHFVRALLRDTNH-------SVVIVDSLVGTHGKSDHVETRENVARKLQQSDGPKPPWADRYAALEV 75 (397)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHHCCC-------EEEEEECCTTTTTCCTTSCCHHHHHHHHHHSCSSCCTTTTCCCEEEE
T ss_pred CEEEEECCCCHHHHHHHHHHHHhCCC-------EEEEEecCCcccccccccchHHHHHHHHHHhhccccccCCceEEEEE
Confidence 589999999999999999999 8775 8999987532100 11110001110 0 0 011
Q ss_pred cceEEeCCHHHHhC--C-CcEEEEecCCCCCC--CCChhHHHhhhHHHHHHHHHHHHhhcCCCcEEEEEeCChhhHHH--
Q 019990 67 KGVVATTDVVEACK--D-VNIAVMVGGFPRKE--GMERKDVMSKNVSIYKAQASALEKHAAPNCKVLVVANPANTNAL-- 139 (332)
Q Consensus 67 ~~v~~~~~~~~a~~--~-aDiVi~~ag~~~~~--~~~~~~~~~~N~~~~~~i~~~i~~~~~~~~~viv~snp~~~~~~-- 139 (332)
.|+.....+.++++ + +|+|||+||..... ..+..+.+..|+..+.++++++.+.+ . .++|++|+. .+...
T Consensus 76 ~Dl~d~~~~~~~~~~~~~~d~vih~A~~~~~~~~~~~~~~~~~~Nv~g~~~ll~a~~~~~-~-~~iv~~SS~-~v~g~~~ 152 (397)
T 1gy8_A 76 GDVRNEDFLNGVFTRHGPIDAVVHMCAFLAVGESVRDPLKYYDNNVVGILRLLQAMLLHK-C-DKIIFSSSA-AIFGNPT 152 (397)
T ss_dssp SCTTCHHHHHHHHHHSCCCCEEEECCCCCCHHHHHHCHHHHHHHHHHHHHHHHHHHHHTT-C-CEEEEEEEG-GGTBSCC
T ss_pred CCCCCHHHHHHHHHhcCCCCEEEECCCccCcCcchhhHHHHHHHHhHHHHHHHHHHHHhC-C-CEEEEECCH-HHhCCCC
Confidence 23333334555666 6 99999999864311 11234578889999999999998864 2 366666642 11100
Q ss_pred ---------HHHHHCCCCCCCcEEEeecccHHHHHHHHHHHcCCCCCCeeeeEEEecC
Q 019990 140 ---------ILKEFAPSIPAKNITCLTRLDHNRAMGQISERLKVHVSDVKNVIIWGNH 188 (332)
Q Consensus 140 ---------~~~~~~~~~~~~~i~~~t~l~~~r~~~~~a~~~~v~~~~v~~~~V~G~h 188 (332)
.+.+. ....+...|+.+|...+++...+++.++++...+|..+|||++
T Consensus 153 ~~~~~~~~~~~~E~-~~~~p~~~Y~~sK~~~e~~~~~~~~~~gi~~~ilRp~~v~G~~ 209 (397)
T 1gy8_A 153 MGSVSTNAEPIDIN-AKKSPESPYGESKLIAERMIRDCAEAYGIKGICLRYFNACGAH 209 (397)
T ss_dssp C-----CCCCBCTT-SCCBCSSHHHHHHHHHHHHHHHHHHHHCCEEEEEEECEEECCC
T ss_pred cccccccccCcCcc-CCCCCCCchHHHHHHHHHHHHHHHHHHCCcEEEEeccceeCCC
Confidence 00000 1122344688899999999988998899999999999999985
|
| >2b69_A UDP-glucuronate decarboxylase 1; UDP-glucoronic acid decarboxylase, structural genomics, STRU genomics consortium, SGC, lyase; HET: MSE NAD UDP; 1.21A {Homo sapiens} SCOP: c.2.1.2 PDB: 4ef7_A* | Back alignment and structure |
|---|
Probab=99.22 E-value=4.4e-11 Score=110.25 Aligned_cols=167 Identities=12% Similarity=0.024 Sum_probs=107.7
Q ss_pred CCcEEEEEcCCChhHHHHHHHHHhcccCCCCCCeEEEEEecccchhhhhhhHhhhhhhccCCccceEE-eCCH-HHHhCC
Q 019990 4 NPLRVLVTGAAGQIGYALVPMIARGIMLGPDQPVILHMLDIEPAAEALNGVKMELIDAAFPLLKGVVA-TTDV-VEACKD 81 (332)
Q Consensus 4 ~~~kI~VtGaaG~IGs~l~~~L~~~~~~~~~~~~~i~l~D~~~~~~~~~~~~~dl~~~~~~~~~~v~~-~~~~-~~a~~~ 81 (332)
++++|+||||+||||++++..|++.+. +|+++++.... ......++.. ..++.. ..|+ ..++.+
T Consensus 26 ~~~~vlVtGatG~iG~~l~~~L~~~g~-------~V~~~~r~~~~--~~~~~~~~~~-----~~~~~~~~~D~~~~~~~~ 91 (343)
T 2b69_A 26 DRKRILITGGAGFVGSHLTDKLMMDGH-------EVTVVDNFFTG--RKRNVEHWIG-----HENFELINHDVVEPLYIE 91 (343)
T ss_dssp -CCEEEEETTTSHHHHHHHHHHHHTTC-------EEEEEECCSSC--CGGGTGGGTT-----CTTEEEEECCTTSCCCCC
T ss_pred CCCEEEEEcCccHHHHHHHHHHHHCCC-------EEEEEeCCCcc--chhhhhhhcc-----CCceEEEeCccCChhhcC
Confidence 468999999999999999999998875 89999875321 0100011110 011111 1122 234678
Q ss_pred CcEEEEecCCCCCC--CCChhHHHhhhHHHHHHHHHHHHhhcCCCcEEEEEeCChhhHHH----HHHHHC----CCCCCC
Q 019990 82 VNIAVMVGGFPRKE--GMERKDVMSKNVSIYKAQASALEKHAAPNCKVLVVANPANTNAL----ILKEFA----PSIPAK 151 (332)
Q Consensus 82 aDiVi~~ag~~~~~--~~~~~~~~~~N~~~~~~i~~~i~~~~~~~~~viv~snp~~~~~~----~~~~~~----~~~~~~ 151 (332)
+|+|||+|+..... ..+....+..|+..+.++++++.+.+ .++|++|+. .+... .+.+.. ...++.
T Consensus 92 ~d~vih~A~~~~~~~~~~~~~~~~~~n~~~~~~l~~a~~~~~---~~~v~~SS~-~v~g~~~~~~~~E~~~~~~~~~~~~ 167 (343)
T 2b69_A 92 VDQIYHLASPASPPNYMYNPIKTLKTNTIGTLNMLGLAKRVG---ARLLLASTS-EVYGDPEVHPQSEDYWGHVNPIGPR 167 (343)
T ss_dssp CSEEEECCSCCSHHHHTTCHHHHHHHHHHHHHHHHHHHHHHT---CEEEEEEEG-GGGBSCSSSSBCTTCCCBCCSSSTT
T ss_pred CCEEEECccccCchhhhhCHHHHHHHHHHHHHHHHHHHHHhC---CcEEEECcH-HHhCCCCCCCCcccccccCCCCCCC
Confidence 99999999864311 12334567889999999999999874 366776642 11000 000000 012233
Q ss_pred cEEEeecccHHHHHHHHHHHcCCCCCCeeeeEEEecC
Q 019990 152 NITCLTRLDHNRAMGQISERLKVHVSDVKNVIIWGNH 188 (332)
Q Consensus 152 ~i~~~t~l~~~r~~~~~a~~~~v~~~~v~~~~V~G~h 188 (332)
..|+.+|...+++...+++..+++...+|...|||+.
T Consensus 168 ~~Y~~sK~~~E~~~~~~~~~~~~~~~ilrp~~v~G~~ 204 (343)
T 2b69_A 168 ACYDEGKRVAETMCYAYMKQEGVEVRVARIFNTFGPR 204 (343)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHCCCEEEEEECCEECTT
T ss_pred CchHHHHHHHHHHHHHHHHHhCCcEEEEEEcceeCcC
Confidence 4688899999999888888889999999998899974
|
| >1db3_A GDP-mannose 4,6-dehydratase; NADP, GDP-fucose, lyase; 2.30A {Escherichia coli} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=99.21 E-value=2.8e-11 Score=112.60 Aligned_cols=175 Identities=10% Similarity=0.009 Sum_probs=108.9
Q ss_pred CcEEEEEcCCChhHHHHHHHHHhcccCCCCCCeEEEEEecccchhhhhhhHhhhhh------hcc-CCccceEEeCCHHH
Q 019990 5 PLRVLVTGAAGQIGYALVPMIARGIMLGPDQPVILHMLDIEPAAEALNGVKMELID------AAF-PLLKGVVATTDVVE 77 (332)
Q Consensus 5 ~~kI~VtGaaG~IGs~l~~~L~~~~~~~~~~~~~i~l~D~~~~~~~~~~~~~dl~~------~~~-~~~~~v~~~~~~~~ 77 (332)
|++|+||||+||||++++..|++.|. +|++++++..... .....++.. ... ....|+....++.+
T Consensus 1 m~~vlVtGatG~iG~~l~~~L~~~g~-------~V~~~~r~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~ 72 (372)
T 1db3_A 1 SKVALITGVTGQDGSYLAEFLLEKGY-------EVHGIKRRASSFN-TERVDHIYQDPHTCNPKFHLHYGDLSDTSNLTR 72 (372)
T ss_dssp CCEEEEETTTSHHHHHHHHHHHHTTC-------EEEEECC----------------------CCEEECCCCSSCHHHHHH
T ss_pred CCEEEEECCCChHHHHHHHHHHHCCC-------EEEEEECCCcccc-hHHHHHHhhccccCCCceEEEECCCCCHHHHHH
Confidence 46899999999999999999998875 8999987542100 000111110 000 11234444444556
Q ss_pred HhCC--CcEEEEecCCCCCC--CCChhHHHhhhHHHHHHHHHHHHhhcCC-CcEEEEEeCChhhHHH----HHHHHCCCC
Q 019990 78 ACKD--VNIAVMVGGFPRKE--GMERKDVMSKNVSIYKAQASALEKHAAP-NCKVLVVANPANTNAL----ILKEFAPSI 148 (332)
Q Consensus 78 a~~~--aDiVi~~ag~~~~~--~~~~~~~~~~N~~~~~~i~~~i~~~~~~-~~~viv~snp~~~~~~----~~~~~~~~~ 148 (332)
++++ .|+|||+||..... .......+..|+..+.++++++.+.... ..++|++|+.. .... .+.+. ...
T Consensus 73 ~~~~~~~d~vih~A~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~iv~~SS~~-v~g~~~~~~~~E~-~~~ 150 (372)
T 1db3_A 73 ILREVQPDEVYNLGAMSHVAVSFESPEYTADVDAMGTLRLLEAIRFLGLEKKTRFYQASTSE-LYGLVQEIPQKET-TPF 150 (372)
T ss_dssp HHHHHCCSEEEECCCCCTTTTTTSCHHHHHHHHTHHHHHHHHHHHHTTCTTTCEEEEEEEGG-GGTTCCSSSBCTT-SCC
T ss_pred HHHhcCCCEEEECCcccCccccccCHHHHHHHHHHHHHHHHHHHHHhCCCCCcEEEEeCChh-hhCCCCCCCCCcc-CCC
Confidence 6664 69999999874321 1223446688999999999999887511 14677776531 1000 00111 123
Q ss_pred CCCcEEEeecccHHHHHHHHHHHcCCCCCCeeeeEEEecCC
Q 019990 149 PAKNITCLTRLDHNRAMGQISERLKVHVSDVKNVIIWGNHS 189 (332)
Q Consensus 149 ~~~~i~~~t~l~~~r~~~~~a~~~~v~~~~v~~~~V~G~hg 189 (332)
++...|+.+|...+++...+++.++++...+|.+.+||+..
T Consensus 151 ~~~~~Y~~sK~~~e~~~~~~~~~~~~~~~~~r~~~~~gp~~ 191 (372)
T 1db3_A 151 YPRSPYAVAKLYAYWITVNYRESYGMYACNGILFNHESPRR 191 (372)
T ss_dssp CCCSHHHHHHHHHHHHHHHHHHHHCCCEEEEEECCEECTTS
T ss_pred CCCChHHHHHHHHHHHHHHHHHHhCCCeEEEEECCccCCCC
Confidence 34456888999999999889998999888788887888743
|
| >3e8x_A Putative NAD-dependent epimerase/dehydratase; structural genomics, APC7755, NADP, P protein structure initiative; HET: MSE NAP; 2.10A {Bacillus halodurans} | Back alignment and structure |
|---|
Probab=99.20 E-value=4.3e-11 Score=104.44 Aligned_cols=159 Identities=13% Similarity=0.084 Sum_probs=104.9
Q ss_pred CCcEEEEEcCCChhHHHHHHHHHhcccCCCCCCeEEEEEecccchhhhhhhHhhhhhhcc--CCccceEEeCCHHHHhCC
Q 019990 4 NPLRVLVTGAAGQIGYALVPMIARGIMLGPDQPVILHMLDIEPAAEALNGVKMELIDAAF--PLLKGVVATTDVVEACKD 81 (332)
Q Consensus 4 ~~~kI~VtGaaG~IGs~l~~~L~~~~~~~~~~~~~i~l~D~~~~~~~~~~~~~dl~~~~~--~~~~~v~~~~~~~~a~~~ 81 (332)
+.|||+||||+|+||++++..|++.|. +|++++++.. .+. .+.+... ....|+. .++.+++.+
T Consensus 20 ~~~~ilVtGatG~iG~~l~~~L~~~G~-------~V~~~~R~~~--~~~----~~~~~~~~~~~~~Dl~--~~~~~~~~~ 84 (236)
T 3e8x_A 20 QGMRVLVVGANGKVARYLLSELKNKGH-------EPVAMVRNEE--QGP----ELRERGASDIVVANLE--EDFSHAFAS 84 (236)
T ss_dssp -CCEEEEETTTSHHHHHHHHHHHHTTC-------EEEEEESSGG--GHH----HHHHTTCSEEEECCTT--SCCGGGGTT
T ss_pred CCCeEEEECCCChHHHHHHHHHHhCCC-------eEEEEECChH--HHH----HHHhCCCceEEEcccH--HHHHHHHcC
Confidence 468999999999999999999999885 8999998642 222 1111111 1123443 556778899
Q ss_pred CcEEEEecCCCCCCCCChhHHHhhhHHHHHHHHHHHHhhcCCCcEEEEEeCChhhHHHHHHHHCCCCCCCcEEEeecccH
Q 019990 82 VNIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEKHAAPNCKVLVVANPANTNALILKEFAPSIPAKNITCLTRLDH 161 (332)
Q Consensus 82 aDiVi~~ag~~~~~~~~~~~~~~~N~~~~~~i~~~i~~~~~~~~~viv~snp~~~~~~~~~~~~~~~~~~~i~~~t~l~~ 161 (332)
+|+|||+||.... .+....+..|+....++++++++.+ . .++|++|+-.... . +. . .++...|+.+|...
T Consensus 85 ~D~vi~~ag~~~~--~~~~~~~~~n~~~~~~l~~a~~~~~-~-~~iv~~SS~~~~~-~---~~-~-~~~~~~Y~~sK~~~ 154 (236)
T 3e8x_A 85 IDAVVFAAGSGPH--TGADKTILIDLWGAIKTIQEAEKRG-I-KRFIMVSSVGTVD-P---DQ-G-PMNMRHYLVAKRLA 154 (236)
T ss_dssp CSEEEECCCCCTT--SCHHHHHHTTTHHHHHHHHHHHHHT-C-CEEEEECCTTCSC-G---GG-S-CGGGHHHHHHHHHH
T ss_pred CCEEEECCCCCCC--CCccccchhhHHHHHHHHHHHHHcC-C-CEEEEEecCCCCC-C---CC-C-hhhhhhHHHHHHHH
Confidence 9999999997542 3345678889999999999998875 2 3677767521110 0 00 0 01222456666655
Q ss_pred HHHHHHHHHHcCCCCCCeeeeEEEecCCCc
Q 019990 162 NRAMGQISERLKVHVSDVKNVIIWGNHSST 191 (332)
Q Consensus 162 ~r~~~~~a~~~~v~~~~v~~~~V~G~hg~~ 191 (332)
+++. +..|++...+|+..++|+....
T Consensus 155 e~~~----~~~gi~~~~lrpg~v~~~~~~~ 180 (236)
T 3e8x_A 155 DDEL----KRSSLDYTIVRPGPLSNEESTG 180 (236)
T ss_dssp HHHH----HHSSSEEEEEEECSEECSCCCS
T ss_pred HHHH----HHCCCCEEEEeCCcccCCCCCC
Confidence 5433 4778988889988888875433
|
| >3vps_A TUNA, NAD-dependent epimerase/dehydratase; tunicamycins, biosynthesis, EXO-glycal, rossman transferase; HET: UD1 NAD; 1.90A {Streptomyces chartreusis} | Back alignment and structure |
|---|
Probab=99.20 E-value=3.3e-11 Score=109.55 Aligned_cols=167 Identities=14% Similarity=0.029 Sum_probs=106.3
Q ss_pred CCcEEEEEcCCChhHHHHHHHHHhcccCCCCCCeEEEEEecccchhhhhhhHhhhhhhccCCccceEEeCCHHHHhCCCc
Q 019990 4 NPLRVLVTGAAGQIGYALVPMIARGIMLGPDQPVILHMLDIEPAAEALNGVKMELIDAAFPLLKGVVATTDVVEACKDVN 83 (332)
Q Consensus 4 ~~~kI~VtGaaG~IGs~l~~~L~~~~~~~~~~~~~i~l~D~~~~~~~~~~~~~dl~~~~~~~~~~v~~~~~~~~a~~~aD 83 (332)
+++||+||||+||||++++..|++.++ +|+.+++..... .+....+.... ...++ .-....+.++|
T Consensus 6 ~~~~vlVtGatG~iG~~l~~~L~~~g~-------~V~~~~r~~~~~--~~~~~~~~~~~--~~~~~---~~~~~Dl~~~d 71 (321)
T 3vps_A 6 LKHRILITGGAGFIGGHLARALVASGE-------EVTVLDDLRVPP--MIPPEGTGKFL--EKPVL---ELEERDLSDVR 71 (321)
T ss_dssp -CCEEEEETTTSHHHHHHHHHHHHTTC-------CEEEECCCSSCC--SSCCTTSSEEE--CSCGG---GCCHHHHTTEE
T ss_pred CCCeEEEECCCChHHHHHHHHHHHCCC-------EEEEEecCCccc--ccchhhhhhhc--cCCCe---eEEeCccccCC
Confidence 368999999999999999999999875 789998754200 00000111100 00011 11122345899
Q ss_pred EEEEecCCCCC--CCCChhHHHhhhHHHHHHHHHHHHhhcCCCcEEEEEeCChhhHHH----HHHHHCCCCCCCcEEEee
Q 019990 84 IAVMVGGFPRK--EGMERKDVMSKNVSIYKAQASALEKHAAPNCKVLVVANPANTNAL----ILKEFAPSIPAKNITCLT 157 (332)
Q Consensus 84 iVi~~ag~~~~--~~~~~~~~~~~N~~~~~~i~~~i~~~~~~~~~viv~snp~~~~~~----~~~~~~~~~~~~~i~~~t 157 (332)
+|||+|+.... ......+.+. |+..+.++++++++.+ . .++|++|+.. +... .+.+. ....|...|+.+
T Consensus 72 ~vi~~a~~~~~~~~~~~~~~~~~-n~~~~~~ll~a~~~~~-v-~~~v~~SS~~-v~~~~~~~~~~E~-~~~~p~~~Y~~s 146 (321)
T 3vps_A 72 LVYHLASHKSVPRSFKQPLDYLD-NVDSGRHLLALCTSVG-V-PKVVVGSTCE-VYGQADTLPTPED-SPLSPRSPYAAS 146 (321)
T ss_dssp EEEECCCCCCHHHHTTSTTTTHH-HHHHHHHHHHHHHHHT-C-CEEEEEEEGG-GGCSCSSSSBCTT-SCCCCCSHHHHH
T ss_pred EEEECCccCChHHHHhCHHHHHH-HHHHHHHHHHHHHHcC-C-CeEEEecCHH-HhCCCCCCCCCCC-CCCCCCChhHHH
Confidence 99999986431 0111233456 9999999999999885 2 2666666421 1000 00111 223344568889
Q ss_pred cccHHHHHHHHHHHcCC-CCCCeeeeEEEecCC
Q 019990 158 RLDHNRAMGQISERLKV-HVSDVKNVIIWGNHS 189 (332)
Q Consensus 158 ~l~~~r~~~~~a~~~~v-~~~~v~~~~V~G~hg 189 (332)
|...+++...+++..++ +...+|...|||+..
T Consensus 147 K~~~E~~~~~~~~~~~~~~~~ilRp~~v~G~~~ 179 (321)
T 3vps_A 147 KVGLEMVAGAHQRASVAPEVGIVRFFNVYGPGE 179 (321)
T ss_dssp HHHHHHHHHHHHHSSSSCEEEEEEECEEECTTC
T ss_pred HHHHHHHHHHHHHHcCCCceEEEEeccccCcCC
Confidence 99999999999988999 899999999999754
|
| >3sc6_A DTDP-4-dehydrorhamnose reductase; RFBD, structural genomics, infectious diseases, bacillus anthracis STR. AMES, rhamnose biosynthetic pathway; HET: NAP; 2.65A {Bacillus anthracis} SCOP: c.2.1.0 | Back alignment and structure |
|---|
Probab=99.20 E-value=4.6e-12 Score=113.80 Aligned_cols=155 Identities=15% Similarity=0.178 Sum_probs=102.4
Q ss_pred cEEEEEcCCChhHHHHHHHHHhcccCCCCCCeEEEEEecccchhhhhhhHhhhhhhccCCccceEEeCCHHHHhC--CCc
Q 019990 6 LRVLVTGAAGQIGYALVPMIARGIMLGPDQPVILHMLDIEPAAEALNGVKMELIDAAFPLLKGVVATTDVVEACK--DVN 83 (332)
Q Consensus 6 ~kI~VtGaaG~IGs~l~~~L~~~~~~~~~~~~~i~l~D~~~~~~~~~~~~~dl~~~~~~~~~~v~~~~~~~~a~~--~aD 83 (332)
|||+||||+||||++++..|++.|+ +|+.+++.. .|+.+ ...+.++++ ++|
T Consensus 6 m~ilVtGatG~iG~~l~~~L~~~g~-------~V~~~~r~~---------~D~~d-----------~~~~~~~~~~~~~d 58 (287)
T 3sc6_A 6 ERVIITGANGQLGKQLQEELNPEEY-------DIYPFDKKL---------LDITN-----------ISQVQQVVQEIRPH 58 (287)
T ss_dssp EEEEEESTTSHHHHHHHHHSCTTTE-------EEEEECTTT---------SCTTC-----------HHHHHHHHHHHCCS
T ss_pred eEEEEECCCCHHHHHHHHHHHhCCC-------EEEEecccc---------cCCCC-----------HHHHHHHHHhcCCC
Confidence 3899999999999999999988775 899998631 12221 233455555 699
Q ss_pred EEEEecCCCCCC--CCChhHHHhhhHHHHHHHHHHHHhhcCCCcEEEEEeCChhhHH----HHHHHHCCCCCCCcEEEee
Q 019990 84 IAVMVGGFPRKE--GMERKDVMSKNVSIYKAQASALEKHAAPNCKVLVVANPANTNA----LILKEFAPSIPAKNITCLT 157 (332)
Q Consensus 84 iVi~~ag~~~~~--~~~~~~~~~~N~~~~~~i~~~i~~~~~~~~~viv~snp~~~~~----~~~~~~~~~~~~~~i~~~t 157 (332)
+|||+|+..... ..+..+.+..|+..+.++++++++.+ +++|++|+.. +.. ..+.+. ....|...|+.+
T Consensus 59 ~vi~~a~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~---~~~v~~SS~~-vy~~~~~~~~~E~-~~~~p~~~Y~~s 133 (287)
T 3sc6_A 59 IIIHCAAYTKVDQAEKERDLAYVINAIGARNVAVASQLVG---AKLVYISTDY-VFQGDRPEGYDEF-HNPAPINIYGAS 133 (287)
T ss_dssp EEEECCCCCCHHHHTTCHHHHHHHHTHHHHHHHHHHHHHT---CEEEEEEEGG-GSCCCCSSCBCTT-SCCCCCSHHHHH
T ss_pred EEEECCcccChHHHhcCHHHHHHHHHHHHHHHHHHHHHcC---CeEEEEchhh-hcCCCCCCCCCCC-CCCCCCCHHHHH
Confidence 999999875321 12345678899999999999999875 3666666421 100 000110 122334467778
Q ss_pred cccHHHHHHHHHHHcCCCCCCeeeeEEEecCCCceeecc
Q 019990 158 RLDHNRAMGQISERLKVHVSDVKNVIIWGNHSSTQYPDV 196 (332)
Q Consensus 158 ~l~~~r~~~~~a~~~~v~~~~v~~~~V~G~hg~~~v~~~ 196 (332)
|...+++...+ +.+...+|...|||+.+...++.+
T Consensus 134 K~~~E~~~~~~----~~~~~ilR~~~v~G~~~~~~~~~~ 168 (287)
T 3sc6_A 134 KYAGEQFVKEL----HNKYFIVRTSWLYGKYGNNFVKTM 168 (287)
T ss_dssp HHHHHHHHHHH----CSSEEEEEECSEECSSSCCHHHHH
T ss_pred HHHHHHHHHHh----CCCcEEEeeeeecCCCCCcHHHHH
Confidence 88777766544 445577898889998665544444
|
| >3ew7_A LMO0794 protein; Q8Y8U8_lismo, putative NAD-dependent epimerase/dehydratase, LMR162, NESG, structural genomics, PSI-2; 2.73A {Listeria monocytogenes} | Back alignment and structure |
|---|
Probab=99.20 E-value=2.1e-11 Score=104.87 Aligned_cols=156 Identities=14% Similarity=0.122 Sum_probs=95.8
Q ss_pred cEEEEEcCCChhHHHHHHHHHhcccCCCCCCeEEEEEecccchhhhhhhHhhhhhhccCCccceEEeCCHHHHhCCCcEE
Q 019990 6 LRVLVTGAAGQIGYALVPMIARGIMLGPDQPVILHMLDIEPAAEALNGVKMELIDAAFPLLKGVVATTDVVEACKDVNIA 85 (332)
Q Consensus 6 ~kI~VtGaaG~IGs~l~~~L~~~~~~~~~~~~~i~l~D~~~~~~~~~~~~~dl~~~~~~~~~~v~~~~~~~~a~~~aDiV 85 (332)
|||+||||+|+||++++..|++.|. +|++++++.. .+. ++.........|+....+ +++.++|+|
T Consensus 1 MkvlVtGatG~iG~~l~~~L~~~g~-------~V~~~~R~~~--~~~----~~~~~~~~~~~D~~d~~~--~~~~~~d~v 65 (221)
T 3ew7_A 1 MKIGIIGATGRAGSRILEEAKNRGH-------EVTAIVRNAG--KIT----QTHKDINILQKDIFDLTL--SDLSDQNVV 65 (221)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTC-------EEEEEESCSH--HHH----HHCSSSEEEECCGGGCCH--HHHTTCSEE
T ss_pred CeEEEEcCCchhHHHHHHHHHhCCC-------EEEEEEcCch--hhh----hccCCCeEEeccccChhh--hhhcCCCEE
Confidence 5899999999999999999999885 8999998642 221 111100011233433322 678999999
Q ss_pred EEecCCCCCCCCChhHHHhhhHHHHHHHHHHHHhhcCCCcEEEEEeCChhhHHH----HHHHHCCCCCCCcEEEeecccH
Q 019990 86 VMVGGFPRKEGMERKDVMSKNVSIYKAQASALEKHAAPNCKVLVVANPANTNAL----ILKEFAPSIPAKNITCLTRLDH 161 (332)
Q Consensus 86 i~~ag~~~~~~~~~~~~~~~N~~~~~~i~~~i~~~~~~~~~viv~snp~~~~~~----~~~~~~~~~~~~~i~~~t~l~~ 161 (332)
||+||.+.. ....|+..++++++++++.+ ..+++++|+....... ...+. ....+...++.++...
T Consensus 66 i~~ag~~~~-------~~~~~~~~~~~l~~a~~~~~--~~~~v~~SS~~~~~~~~~~~~~~~~-~~~~~~~~y~~~k~~~ 135 (221)
T 3ew7_A 66 VDAYGISPD-------EAEKHVTSLDHLISVLNGTV--SPRLLVVGGAASLQIDEDGNTLLES-KGLREAPYYPTARAQA 135 (221)
T ss_dssp EECCCSSTT-------TTTSHHHHHHHHHHHHCSCC--SSEEEEECCCC--------------------CCCSCCHHHHH
T ss_pred EECCcCCcc-------ccchHHHHHHHHHHHHHhcC--CceEEEEecceEEEcCCCCcccccc-CCCCCHHHHHHHHHHH
Confidence 999987432 13457888999999999874 3466777653211000 00010 1112233466677666
Q ss_pred HHHHHHHHH-HcCCCCCCeeeeEEEec
Q 019990 162 NRAMGQISE-RLKVHVSDVKNVIIWGN 187 (332)
Q Consensus 162 ~r~~~~~a~-~~~v~~~~v~~~~V~G~ 187 (332)
+.+.. +.+ ..+++...+|+..++|+
T Consensus 136 e~~~~-~~~~~~gi~~~ivrp~~v~g~ 161 (221)
T 3ew7_A 136 KQLEH-LKSHQAEFSWTYISPSAMFEP 161 (221)
T ss_dssp HHHHH-HHTTTTTSCEEEEECSSCCCC
T ss_pred HHHHH-HHhhccCccEEEEeCcceecC
Confidence 66533 443 67888888887777776
|
| >2pzm_A Putative nucleotide sugar epimerase/ dehydratase; rossman fold, protein-NAD complex, protein-nucleotide comple binding protein; HET: NAD UDP; 2.00A {Bordetella bronchiseptica} PDB: 2pzl_A* 2pzk_A* | Back alignment and structure |
|---|
Probab=99.19 E-value=2.5e-11 Score=111.44 Aligned_cols=163 Identities=15% Similarity=0.080 Sum_probs=102.5
Q ss_pred CCcEEEEEcCCChhHHHHHHHHHhcccCCCCCCeEEEEEecccchhhhhhhHhhhhhhccCCccceEEeCCHHHHhC--C
Q 019990 4 NPLRVLVTGAAGQIGYALVPMIARGIMLGPDQPVILHMLDIEPAAEALNGVKMELIDAAFPLLKGVVATTDVVEACK--D 81 (332)
Q Consensus 4 ~~~kI~VtGaaG~IGs~l~~~L~~~~~~~~~~~~~i~l~D~~~~~~~~~~~~~dl~~~~~~~~~~v~~~~~~~~a~~--~ 81 (332)
+.|+|+||||+||||++++..|++.|. +|++++++... ......++... .....|+....++.++++ +
T Consensus 19 ~~~~vlVTGasG~iG~~l~~~L~~~g~-------~V~~~~r~~~~--~~~~~~~l~~v-~~~~~Dl~d~~~~~~~~~~~~ 88 (330)
T 2pzm_A 19 SHMRILITGGAGCLGSNLIEHWLPQGH-------EILVIDNFATG--KREVLPPVAGL-SVIEGSVTDAGLLERAFDSFK 88 (330)
T ss_dssp TCCEEEEETTTSHHHHHHHHHHGGGTC-------EEEEEECCSSS--CGGGSCSCTTE-EEEECCTTCHHHHHHHHHHHC
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHCCC-------EEEEEECCCcc--chhhhhccCCc-eEEEeeCCCHHHHHHHHhhcC
Confidence 357999999999999999999998875 89999875321 11000111110 011234443444566777 9
Q ss_pred CcEEEEecCCCCCCCCChhHHHhhhHHHHHHHHHHHHhhcCCCcEEEEEeCChhhHHHHHHHHCCCC--C------CCcE
Q 019990 82 VNIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEKHAAPNCKVLVVANPANTNALILKEFAPSI--P------AKNI 153 (332)
Q Consensus 82 aDiVi~~ag~~~~~~~~~~~~~~~N~~~~~~i~~~i~~~~~~~~~viv~snp~~~~~~~~~~~~~~~--~------~~~i 153 (332)
+|+|||+||..........+ +..|+..+.++++++.+.+ ..++|++|+.. . + .. .... + +...
T Consensus 89 ~D~vih~A~~~~~~~~~~~~-~~~N~~~~~~l~~a~~~~~--~~~iV~~SS~~-~--~--~~-~~~~~~~~~E~~~~~~~ 159 (330)
T 2pzm_A 89 PTHVVHSAAAYKDPDDWAED-AATNVQGSINVAKAASKAG--VKRLLNFQTAL-C--Y--GR-PATVPIPIDSPTAPFTS 159 (330)
T ss_dssp CSEEEECCCCCSCTTCHHHH-HHHHTHHHHHHHHHHHHHT--CSEEEEEEEGG-G--G--CS-CSSSSBCTTCCCCCCSH
T ss_pred CCEEEECCccCCCccccChh-HHHHHHHHHHHHHHHHHcC--CCEEEEecCHH-H--h--CC-CccCCCCcCCCCCCCCh
Confidence 99999999875431111223 7889999999999999874 23667776532 1 1 00 0000 1 3345
Q ss_pred EEeecccHHHHHHHHHHHcCCCCCCeeeeEEEecCC
Q 019990 154 TCLTRLDHNRAMGQISERLKVHVSDVKNVIIWGNHS 189 (332)
Q Consensus 154 ~~~t~l~~~r~~~~~a~~~~v~~~~v~~~~V~G~hg 189 (332)
|+.++...+++.. .++++...+|..++||+..
T Consensus 160 Y~~sK~~~e~~~~----~~~~~~~~iR~~~v~gp~~ 191 (330)
T 2pzm_A 160 YGISKTAGEAFLM----MSDVPVVSLRLANVTGPRL 191 (330)
T ss_dssp HHHHHHHHHHHHH----TCSSCEEEEEECEEECTTC
T ss_pred HHHHHHHHHHHHH----HcCCCEEEEeeeeeECcCC
Confidence 6777776665543 3488888999778899854
|
| >1e6u_A GDP-fucose synthetase; epimerase/reductase, SDR, RED; HET: NAP; 1.45A {Escherichia coli} SCOP: c.2.1.2 PDB: 1e7q_A* 1bsv_A* 1fxs_A* 1gfs_A 1e7s_A* 1bws_A* 1e7r_A* | Back alignment and structure |
|---|
Probab=99.19 E-value=2.6e-11 Score=110.58 Aligned_cols=156 Identities=12% Similarity=0.159 Sum_probs=106.7
Q ss_pred CcEEEEEcCCChhHHHHHHHHHhcccCCCCCCeEEEEEecccchhhhhhhHhhhhhhccCCccceEEeCCHHHHhC--CC
Q 019990 5 PLRVLVTGAAGQIGYALVPMIARGIMLGPDQPVILHMLDIEPAAEALNGVKMELIDAAFPLLKGVVATTDVVEACK--DV 82 (332)
Q Consensus 5 ~~kI~VtGaaG~IGs~l~~~L~~~~~~~~~~~~~i~l~D~~~~~~~~~~~~~dl~~~~~~~~~~v~~~~~~~~a~~--~a 82 (332)
+|||+||||+||||++++..|++.+. ++++++.+. . .|+. ...++.++++ ++
T Consensus 3 ~~~ilVtGatG~iG~~l~~~L~~~g~-------~v~~~~r~~-----~---~D~~-----------d~~~~~~~~~~~~~ 56 (321)
T 1e6u_A 3 KQRVFIAGHRGMVGSAIRRQLEQRGD-------VELVLRTRD-----E---LNLL-----------DSRAVHDFFASERI 56 (321)
T ss_dssp CEEEEEETTTSHHHHHHHHHHTTCTT-------EEEECCCTT-----T---CCTT-----------CHHHHHHHHHHHCC
T ss_pred CCEEEEECCCcHHHHHHHHHHHhCCC-------eEEEEecCc-----c---CCcc-----------CHHHHHHHHHhcCC
Confidence 47899999999999999999998775 777777531 1 1222 1234556666 89
Q ss_pred cEEEEecCCCCCC---CCChhHHHhhhHHHHHHHHHHHHhhcCCCcEEEEEeCChhhHHH----HHHHHCC---CCCCC-
Q 019990 83 NIAVMVGGFPRKE---GMERKDVMSKNVSIYKAQASALEKHAAPNCKVLVVANPANTNAL----ILKEFAP---SIPAK- 151 (332)
Q Consensus 83 DiVi~~ag~~~~~---~~~~~~~~~~N~~~~~~i~~~i~~~~~~~~~viv~snp~~~~~~----~~~~~~~---~~~~~- 151 (332)
|+|||+|+..... ..+..+.+..|+..+.++++++.+.+ . .++|++|+.. +... .+.+... ...|.
T Consensus 57 d~vih~a~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~-~-~~~v~~SS~~-vyg~~~~~~~~E~~~~~~~~~p~~ 133 (321)
T 1e6u_A 57 DQVYLAAAKVGGIVANNTYPADFIYQNMMIESNIIHAAHQND-V-NKLLFLGSSC-IYPKLAKQPMAESELLQGTLEPTN 133 (321)
T ss_dssp SEEEECCCCCCCHHHHHHCHHHHHHHHHHHHHHHHHHHHHTT-C-CEEEEECCGG-GSCTTCCSSBCGGGTTSSCCCGGG
T ss_pred CEEEEcCeecCCcchhhhCHHHHHHHHHHHHHHHHHHHHHhC-C-CeEEEEccHH-HcCCCCCCCcCccccccCCCCCCC
Confidence 9999999865311 11234567889999999999999864 2 2667777532 1000 0001000 11222
Q ss_pred cEEEeecccHHHHHHHHHHHcCCCCCCeeeeEEEecCC
Q 019990 152 NITCLTRLDHNRAMGQISERLKVHVSDVKNVIIWGNHS 189 (332)
Q Consensus 152 ~i~~~t~l~~~r~~~~~a~~~~v~~~~v~~~~V~G~hg 189 (332)
..|+.++...+++...+++..+++...+|...|||+..
T Consensus 134 ~~Y~~sK~~~E~~~~~~~~~~~~~~~ilrp~~v~G~~~ 171 (321)
T 1e6u_A 134 EPYAIAKIAGIKLCESYNRQYGRDYRSVMPTNLYGPHD 171 (321)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHCCEEEEEEECEEESTTC
T ss_pred CccHHHHHHHHHHHHHHHHHhCCCEEEEEeCCcCCcCC
Confidence 26788899899988888888899999999999999754
|
| >1ek6_A UDP-galactose 4-epimerase; short-chain dehydrogenase, galactosemia, isomerase; HET: NAI UPG; 1.50A {Homo sapiens} SCOP: c.2.1.2 PDB: 1ek5_A* 1hzj_A* 1i3k_A* 1i3l_A* 1i3m_A* 1i3n_A* | Back alignment and structure |
|---|
Probab=99.18 E-value=3.4e-11 Score=111.06 Aligned_cols=172 Identities=13% Similarity=0.072 Sum_probs=108.9
Q ss_pred CcEEEEEcCCChhHHHHHHHHHhcccCCCCCCeEEEEEecccch----hhhhhhHhhhhh---hcc-CCccceEEeCCHH
Q 019990 5 PLRVLVTGAAGQIGYALVPMIARGIMLGPDQPVILHMLDIEPAA----EALNGVKMELID---AAF-PLLKGVVATTDVV 76 (332)
Q Consensus 5 ~~kI~VtGaaG~IGs~l~~~L~~~~~~~~~~~~~i~l~D~~~~~----~~~~~~~~dl~~---~~~-~~~~~v~~~~~~~ 76 (332)
+|+|+||||+||||++++..|++.|. +|+++|+.... +.......++.. ... ....|+....++.
T Consensus 2 ~~~vlVtGatG~iG~~l~~~L~~~g~-------~V~~~~r~~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~D~~~~~~~~ 74 (348)
T 1ek6_A 2 AEKVLVTGGAGYIGSHTVLELLEAGY-------LPVVIDNFHNAFRGGGSLPESLRRVQELTGRSVEFEEMDILDQGALQ 74 (348)
T ss_dssp CSEEEEETTTSHHHHHHHHHHHHTTC-------CEEEEECSSSSCBCSSSSBHHHHHHHHHHTCCCEEEECCTTCHHHHH
T ss_pred CCEEEEECCCCHHHHHHHHHHHHCCC-------EEEEEecCCcccccccccHHHHHHHHhccCCceEEEECCCCCHHHHH
Confidence 36899999999999999999998875 78888864311 000111111211 011 1123444334455
Q ss_pred HHhC--CCcEEEEecCCCCCC--CCChhHHHhhhHHHHHHHHHHHHhhcCCCcEEEEEeCChhhHHH----HHHHHCCCC
Q 019990 77 EACK--DVNIAVMVGGFPRKE--GMERKDVMSKNVSIYKAQASALEKHAAPNCKVLVVANPANTNAL----ILKEFAPSI 148 (332)
Q Consensus 77 ~a~~--~aDiVi~~ag~~~~~--~~~~~~~~~~N~~~~~~i~~~i~~~~~~~~~viv~snp~~~~~~----~~~~~~~~~ 148 (332)
++++ ++|+|||+||..... .....+.+..|+..+.++++++++.+ . .++|++|+. ..... .+.+. ...
T Consensus 75 ~~~~~~~~d~vih~A~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~-~-~~iv~~SS~-~~~g~~~~~~~~E~-~~~ 150 (348)
T 1ek6_A 75 RLFKKYSFMAVIHFAGLKAVGESVQKPLDYYRVNLTGTIQLLEIMKAHG-V-KNLVFSSSA-TVYGNPQYLPLDEA-HPT 150 (348)
T ss_dssp HHHHHCCEEEEEECCSCCCHHHHHHCHHHHHHHHHHHHHHHHHHHHHTT-C-CEEEEEEEG-GGGCSCSSSSBCTT-SCC
T ss_pred HHHHhcCCCEEEECCCCcCccchhhchHHHHHHHHHHHHHHHHHHHHhC-C-CEEEEECcH-HHhCCCCCCCcCCC-CCC
Confidence 6666 899999999864211 11234577889999999999998864 2 366666642 11000 00010 112
Q ss_pred CC-CcEEEeecccHHHHHHHHHHHcC--CCCCCeeeeEEEecC
Q 019990 149 PA-KNITCLTRLDHNRAMGQISERLK--VHVSDVKNVIIWGNH 188 (332)
Q Consensus 149 ~~-~~i~~~t~l~~~r~~~~~a~~~~--v~~~~v~~~~V~G~h 188 (332)
.| ...|+.+|...+++...+++. + ++...+|..+|||++
T Consensus 151 ~p~~~~Y~~sK~~~e~~~~~~~~~-~~~~~~~~lR~~~v~G~~ 192 (348)
T 1ek6_A 151 GGCTNPYGKSKFFIEEMIRDLCQA-DKTWNAVLLRYFNPTGAH 192 (348)
T ss_dssp CCCSSHHHHHHHHHHHHHHHHHHH-CTTCEEEEEEECEEECCC
T ss_pred CCCCCchHHHHHHHHHHHHHHHhc-CCCcceEEEeeccccCCC
Confidence 23 346888999999988888877 6 888899999999985
|
| >1t2a_A GDP-mannose 4,6 dehydratase; structural genomics consortium, rossman-fold, short-chain dehydrogenase/reductase, SDR, structural genomics,lyase; HET: NDP GDP; 1.84A {Homo sapiens} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=99.17 E-value=1.4e-11 Score=114.92 Aligned_cols=176 Identities=10% Similarity=-0.013 Sum_probs=109.7
Q ss_pred cEEEEEcCCChhHHHHHHHHHhcccCCCCCCeEEEEEecccch---hhhhhhHhhh---hhhcc-CCccceEEeCCHHHH
Q 019990 6 LRVLVTGAAGQIGYALVPMIARGIMLGPDQPVILHMLDIEPAA---EALNGVKMEL---IDAAF-PLLKGVVATTDVVEA 78 (332)
Q Consensus 6 ~kI~VtGaaG~IGs~l~~~L~~~~~~~~~~~~~i~l~D~~~~~---~~~~~~~~dl---~~~~~-~~~~~v~~~~~~~~a 78 (332)
++|+||||+||||++++..|++.|. +|++++++... +.+.....+. ..... ....|+....++.++
T Consensus 25 ~~vlVtGatG~iG~~l~~~L~~~g~-------~V~~~~r~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~Dl~d~~~~~~~ 97 (375)
T 1t2a_A 25 NVALITGITGQDGSYLAEFLLEKGY-------EVHGIVRRSSSFNTGRIEHLYKNPQAHIEGNMKLHYGDLTDSTCLVKI 97 (375)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTC-------EEEEEECCCSSCCCTTTGGGC---------CEEEEECCTTCHHHHHHH
T ss_pred cEEEEECCCchHHHHHHHHHHHCCC-------EEEEEECCccccchhhHHHHhhhhccccCCCceEEEccCCCHHHHHHH
Confidence 6899999999999999999998875 89999875421 0111100000 00000 011233333345555
Q ss_pred hCC--CcEEEEecCCCCCC--CCChhHHHhhhHHHHHHHHHHHHhhcCC-CcEEEEEeCChhhHH---HHHHHHCCCCCC
Q 019990 79 CKD--VNIAVMVGGFPRKE--GMERKDVMSKNVSIYKAQASALEKHAAP-NCKVLVVANPANTNA---LILKEFAPSIPA 150 (332)
Q Consensus 79 ~~~--aDiVi~~ag~~~~~--~~~~~~~~~~N~~~~~~i~~~i~~~~~~-~~~viv~snp~~~~~---~~~~~~~~~~~~ 150 (332)
+++ .|+|||+||..... ..+....+..|+..+..+++++.+.+.. ..++|++|+..-.-. ..+.+. ...++
T Consensus 98 ~~~~~~d~vih~A~~~~~~~~~~~~~~~~~~N~~g~~~l~~a~~~~~~~~~~~iv~~SS~~~~~~~~~~~~~E~-~~~~~ 176 (375)
T 1t2a_A 98 INEVKPTEIYNLGAQSHVKISFDLAEYTADVDGVGTLRLLDAVKTCGLINSVKFYQASTSELYGKVQEIPQKET-TPFYP 176 (375)
T ss_dssp HHHHCCSEEEECCSCCCHHHHHHSHHHHHHHHTHHHHHHHHHHHHTTCTTTCEEEEEEEGGGTCSCSSSSBCTT-SCCCC
T ss_pred HHhcCCCEEEECCCcccccccccCHHHHHHHHHHHHHHHHHHHHHhCCCccceEEEecchhhhCCCCCCCCCcc-CCCCC
Confidence 664 69999999864311 1123456788999999999999887521 146777765321000 000110 12334
Q ss_pred CcEEEeecccHHHHHHHHHHHcCCCCCCeeeeEEEecCC
Q 019990 151 KNITCLTRLDHNRAMGQISERLKVHVSDVKNVIIWGNHS 189 (332)
Q Consensus 151 ~~i~~~t~l~~~r~~~~~a~~~~v~~~~v~~~~V~G~hg 189 (332)
...|+.+|...+++...+++.++++...+|.+.+||+..
T Consensus 177 ~~~Y~~sK~~~e~~~~~~~~~~~~~~~i~r~~~~~gp~~ 215 (375)
T 1t2a_A 177 RSPYGAAKLYAYWIVVNFREAYNLFAVNGILFNHESPRR 215 (375)
T ss_dssp CSHHHHHHHHHHHHHHHHHHHHCCEEEEEEECCEECTTS
T ss_pred CChhHHHHHHHHHHHHHHHHHhCCCEEEEecccccCCCC
Confidence 456888999999998889988999888888888888743
|
| >3ay3_A NAD-dependent epimerase/dehydratase; glucuronic acid dehydrogeanse, oxidoreductase; 2.10A {Chromohalobacter salexigens} | Back alignment and structure |
|---|
Probab=99.17 E-value=2e-11 Score=108.65 Aligned_cols=161 Identities=14% Similarity=0.146 Sum_probs=105.9
Q ss_pred CcEEEEEcCCChhHHHHHHHHHhcccCCCCCCeEEEEEecccchhhhhhhHhhhhhhccCCccceEEeCCHHHHhCCCcE
Q 019990 5 PLRVLVTGAAGQIGYALVPMIARGIMLGPDQPVILHMLDIEPAAEALNGVKMELIDAAFPLLKGVVATTDVVEACKDVNI 84 (332)
Q Consensus 5 ~~kI~VtGaaG~IGs~l~~~L~~~~~~~~~~~~~i~l~D~~~~~~~~~~~~~dl~~~~~~~~~~v~~~~~~~~a~~~aDi 84 (332)
|++|+||||+|+||++++..|++.+. +|++++++... ... ... .....|+.....+.++++++|+
T Consensus 2 ~~~ilVtGatG~iG~~l~~~L~~~g~-------~V~~~~r~~~~-~~~------~~~-~~~~~Dl~d~~~~~~~~~~~d~ 66 (267)
T 3ay3_A 2 LNRLLVTGAAGGVGSAIRPHLGTLAH-------EVRLSDIVDLG-AAE------AHE-EIVACDLADAQAVHDLVKDCDG 66 (267)
T ss_dssp EEEEEEESTTSHHHHHHGGGGGGTEE-------EEEECCSSCCC-CCC------TTE-EECCCCTTCHHHHHHHHTTCSE
T ss_pred CceEEEECCCCHHHHHHHHHHHhCCC-------EEEEEeCCCcc-ccC------CCc-cEEEccCCCHHHHHHHHcCCCE
Confidence 46899999999999999999998775 89999886421 110 000 1122344444556777899999
Q ss_pred EEEecCCCCCCCCChhHHHhhhHHHHHHHHHHHHhhcCCCcEEEEEeCChhhH----HHHHHHHCCCCCCCcEEEeeccc
Q 019990 85 AVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEKHAAPNCKVLVVANPANTN----ALILKEFAPSIPAKNITCLTRLD 160 (332)
Q Consensus 85 Vi~~ag~~~~~~~~~~~~~~~N~~~~~~i~~~i~~~~~~~~~viv~snp~~~~----~~~~~~~~~~~~~~~i~~~t~l~ 160 (332)
|||+||... ..+....+..|+..+.++++++.+.+ ..++|++|+..-.- ...+.+. ....+...|+.+|..
T Consensus 67 vi~~a~~~~--~~~~~~~~~~n~~~~~~l~~a~~~~~--~~~iv~~SS~~~~~~~~~~~~~~E~-~~~~~~~~Y~~sK~~ 141 (267)
T 3ay3_A 67 IIHLGGVSV--ERPWNDILQANIIGAYNLYEAARNLG--KPRIVFASSNHTIGYYPRTTRIDTE-VPRRPDSLYGLSKCF 141 (267)
T ss_dssp EEECCSCCS--CCCHHHHHHHTHHHHHHHHHHHHHTT--CCEEEEEEEGGGSTTSBTTSCBCTT-SCCCCCSHHHHHHHH
T ss_pred EEECCcCCC--CCCHHHHHHHHHHHHHHHHHHHHHhC--CCEEEEeCCHHHhCCCCCCCCCCCC-CCCCCCChHHHHHHH
Confidence 999998752 23345678889999999999998764 23666666432100 0000110 112233467888888
Q ss_pred HHHHHHHHHHHcCCCCCCeeeeEEE
Q 019990 161 HNRAMGQISERLKVHVSDVKNVIIW 185 (332)
Q Consensus 161 ~~r~~~~~a~~~~v~~~~v~~~~V~ 185 (332)
.+++...+++..|++...+|...+|
T Consensus 142 ~e~~~~~~~~~~gi~~~~lrp~~v~ 166 (267)
T 3ay3_A 142 GEDLASLYYHKFDIETLNIRIGSCF 166 (267)
T ss_dssp HHHHHHHHHHTTCCCEEEEEECBCS
T ss_pred HHHHHHHHHHHcCCCEEEEeceeec
Confidence 8888877777788877777765544
|
| >1udb_A Epimerase, UDP-galactose-4-epimerase; isomerase; HET: NAD UFG; 1.65A {Escherichia coli} SCOP: c.2.1.2 PDB: 1lrj_A* 1nai_A* 1uda_A* 1nah_A* 1xel_A* 1kvq_A* 1kvs_A* 1udc_A* 2udp_A* 1a9z_A* 1kvt_A* 1kvr_A* 1lrk_A* 1lrl_A* 1kvu_A* 1a9y_A* | Back alignment and structure |
|---|
Probab=99.16 E-value=4.4e-11 Score=109.88 Aligned_cols=170 Identities=13% Similarity=0.064 Sum_probs=107.2
Q ss_pred cEEEEEcCCChhHHHHHHHHHhcccCCCCCCeEEEEEecccchhhhhhhHhhhhhh---cc-CCccceEEeCCHHHHhC-
Q 019990 6 LRVLVTGAAGQIGYALVPMIARGIMLGPDQPVILHMLDIEPAAEALNGVKMELIDA---AF-PLLKGVVATTDVVEACK- 80 (332)
Q Consensus 6 ~kI~VtGaaG~IGs~l~~~L~~~~~~~~~~~~~i~l~D~~~~~~~~~~~~~dl~~~---~~-~~~~~v~~~~~~~~a~~- 80 (332)
|||+||||+||||++++..|++.|. +|+++|+..... ......+... .. ....|+....++.++++
T Consensus 1 m~vlVTGatG~iG~~l~~~L~~~G~-------~V~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~ 71 (338)
T 1udb_A 1 MRVLVTGGSGYIGSHTCVQLLQNGH-------DVIILDNLCNSK--RSVLPVIERLGGKHPTFVEGDIRNEALMTEILHD 71 (338)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTC-------EEEEEECCSSCC--TTHHHHHHHHHTSCCEEEECCTTCHHHHHHHHHH
T ss_pred CEEEEECCCCHHHHHHHHHHHHCCC-------EEEEEecCCCcc--hhHHHHHHhhcCCcceEEEccCCCHHHHHHHhhc
Confidence 4799999999999999999998875 888888532110 0011111110 00 11234433334555565
Q ss_pred -CCcEEEEecCCCCCC--CCChhHHHhhhHHHHHHHHHHHHhhcCCCcEEEEEeCChhhHHH----HHHHHCCCC-CCCc
Q 019990 81 -DVNIAVMVGGFPRKE--GMERKDVMSKNVSIYKAQASALEKHAAPNCKVLVVANPANTNAL----ILKEFAPSI-PAKN 152 (332)
Q Consensus 81 -~aDiVi~~ag~~~~~--~~~~~~~~~~N~~~~~~i~~~i~~~~~~~~~viv~snp~~~~~~----~~~~~~~~~-~~~~ 152 (332)
++|+|||+||..... .....+.+..|+..+..+++++++.+ . .++|++|+. ..... .+.+. ... ++..
T Consensus 72 ~~~D~vih~A~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~-~-~~iv~~SS~-~~~g~~~~~~~~e~-~~~~~~~~ 147 (338)
T 1udb_A 72 HAIDTVIHFAGLKAVGESVQKPLEYYDNNVNGTLRLISAMRAAN-V-KNFIFSSSA-TVYGDNPKIPYVES-FPTGTPQS 147 (338)
T ss_dssp TTCSEEEECCSCCCHHHHHHCHHHHHHHHHHHHHHHHHHHHHHT-C-CEEEEEEEG-GGGCSCCSSSBCTT-SCCCCCSS
T ss_pred cCCCEEEECCccCccccchhcHHHHHHHHHHHHHHHHHHHHhcC-C-CeEEEEccH-HHhCCCCCCCcCcc-cCCCCCCC
Confidence 589999999864211 01224567889999999999998874 2 366666642 11000 00010 112 2244
Q ss_pred EEEeecccHHHHHHHHHHHc-CCCCCCeeeeEEEecC
Q 019990 153 ITCLTRLDHNRAMGQISERL-KVHVSDVKNVIIWGNH 188 (332)
Q Consensus 153 i~~~t~l~~~r~~~~~a~~~-~v~~~~v~~~~V~G~h 188 (332)
.|+.+|...+++...+++.. +++...+|.++|||++
T Consensus 148 ~Y~~sK~~~e~~~~~~~~~~~~~~~~ilR~~~v~G~~ 184 (338)
T 1udb_A 148 PYGKSKLMVEQILTDLQKAQPDWSIALLRYFNPVGAH 184 (338)
T ss_dssp HHHHHHHHHHHHHHHHHHHSTTCEEEEEEECEEECCC
T ss_pred hHHHHHHHHHHHHHHHHHhcCCCceEEEeeceecCCC
Confidence 68889999999988888776 7888889999999985
|
| >4b8w_A GDP-L-fucose synthase; oxidoreductase; HET: NAP GDP; 2.75A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.16 E-value=5.2e-11 Score=107.74 Aligned_cols=161 Identities=14% Similarity=0.102 Sum_probs=104.4
Q ss_pred CCCcEEEEEcCCChhHHHHHHHHHhcccCCCCCCeEEEEEecccchhhhhhhHhhhhhhccCCccceEEeCCHHHHhCC-
Q 019990 3 KNPLRVLVTGAAGQIGYALVPMIARGIMLGPDQPVILHMLDIEPAAEALNGVKMELIDAAFPLLKGVVATTDVVEACKD- 81 (332)
Q Consensus 3 ~~~~kI~VtGaaG~IGs~l~~~L~~~~~~~~~~~~~i~l~D~~~~~~~~~~~~~dl~~~~~~~~~~v~~~~~~~~a~~~- 81 (332)
.++|||+||||+||||++++..|++.+... ..+...+.. .. .|+.....+.+++++
T Consensus 4 ~~~~~vlVtGatG~iG~~l~~~L~~~g~~~---~~~~~~~~~---------~~-----------~D~~d~~~~~~~~~~~ 60 (319)
T 4b8w_A 4 FQSMRILVTGGSGLVGKAIQKVVADGAGLP---GEDWVFVSS---------KD-----------ADLTDTAQTRALFEKV 60 (319)
T ss_dssp CCCCEEEEETCSSHHHHHHHHHHHTTTCCT---TCEEEECCT---------TT-----------CCTTSHHHHHHHHHHS
T ss_pred ccCCeEEEECCCcHHHHHHHHHHHhcCCcc---cccccccCc---------ee-----------cccCCHHHHHHHHhhc
Confidence 457899999999999999999999877411 011111110 11 122222345566665
Q ss_pred -CcEEEEecCCCCC---CCCChhHHHhhhHHHHHHHHHHHHhhcCCCcEEEEEeCChhhHHH----HHHHHC---CCCCC
Q 019990 82 -VNIAVMVGGFPRK---EGMERKDVMSKNVSIYKAQASALEKHAAPNCKVLVVANPANTNAL----ILKEFA---PSIPA 150 (332)
Q Consensus 82 -aDiVi~~ag~~~~---~~~~~~~~~~~N~~~~~~i~~~i~~~~~~~~~viv~snp~~~~~~----~~~~~~---~~~~~ 150 (332)
+|+|||+|+.... ...+..+.+..|+.++.++++++++.+ .. ++|++|+.. +... .+.+.. ....|
T Consensus 61 ~~d~Vih~A~~~~~~~~~~~~~~~~~~~nv~gt~~ll~a~~~~~-~~-~~v~~SS~~-vyg~~~~~~~~E~~~~~~~~~p 137 (319)
T 4b8w_A 61 QPTHVIHLAAMVGGLFRNIKYNLDFWRKNVHMNDNVLHSAFEVG-AR-KVVSCLSTC-IFPDKTTYPIDETMIHNGPPHN 137 (319)
T ss_dssp CCSEEEECCCCCCCHHHHTTCHHHHHHHHHHHHHHHHHHHHHTT-CS-EEEEECCGG-GSCSSCCSSBCGGGGGBSCCCS
T ss_pred CCCEEEECceecccccccccCHHHHHHHHHHHHHHHHHHHHHcC-CC-eEEEEcchh-hcCCCCCCCccccccccCCCCC
Confidence 9999999987421 112345678899999999999999875 22 666666421 1000 000000 01222
Q ss_pred Cc-EEEeecccHHHHHHHHHHHcCCCCCCeeeeEEEecCC
Q 019990 151 KN-ITCLTRLDHNRAMGQISERLKVHVSDVKNVIIWGNHS 189 (332)
Q Consensus 151 ~~-i~~~t~l~~~r~~~~~a~~~~v~~~~v~~~~V~G~hg 189 (332)
.. .|+.+|...+++...+++..+++...+|..+|||+..
T Consensus 138 ~~~~Y~~sK~~~E~~~~~~~~~~~~~~~ilRp~~v~Gp~~ 177 (319)
T 4b8w_A 138 SNFGYSYAKRMIDVQNRAYFQQYGCTFTAVIPTNVFGPHD 177 (319)
T ss_dssp SSHHHHHHHHHHHHHHHHHHHHHCCEEEEEEECEEECTTC
T ss_pred CcchHHHHHHHHHHHHHHHHHhhCCCEEEEeeccccCCCC
Confidence 23 4788899999999889999999999999999999754
|
| >3m1a_A Putative dehydrogenase; short, PSI, MCSG, structural genomics, midwest center for structural genomics, protein structure initiative; 2.00A {Streptomyces avermitilis} | Back alignment and structure |
|---|
Probab=99.16 E-value=2.7e-11 Score=108.67 Aligned_cols=152 Identities=16% Similarity=0.129 Sum_probs=95.0
Q ss_pred CCCCCcEEEEEcCCChhHHHHHHHHHhcccCCCCCCeEEEEEecccchhhhhhhHhhhhhhccCCccceEEeCCHHHHhC
Q 019990 1 MAKNPLRVLVTGAAGQIGYALVPMIARGIMLGPDQPVILHMLDIEPAAEALNGVKMELIDAAFPLLKGVVATTDVVEACK 80 (332)
Q Consensus 1 m~~~~~kI~VtGaaG~IGs~l~~~L~~~~~~~~~~~~~i~l~D~~~~~~~~~~~~~dl~~~~~~~~~~v~~~~~~~~a~~ 80 (332)
|+.++++|+||||+|+||++++..|++.|. +|++.|++. +.+.....++.........|++...++.++++
T Consensus 1 M~~~~k~vlVTGas~gIG~~~a~~l~~~G~-------~V~~~~r~~--~~~~~~~~~~~~~~~~~~~Dv~~~~~~~~~~~ 71 (281)
T 3m1a_A 1 MSESAKVWLVTGASSGFGRAIAEAAVAAGD-------TVIGTARRT--EALDDLVAAYPDRAEAISLDVTDGERIDVVAA 71 (281)
T ss_dssp ---CCCEEEETTTTSHHHHHHHHHHHHTTC-------EEEEEESSG--GGGHHHHHHCTTTEEEEECCTTCHHHHHHHHH
T ss_pred CCCCCcEEEEECCCChHHHHHHHHHHHCCC-------EEEEEeCCH--HHHHHHHHhccCCceEEEeeCCCHHHHHHHHH
Confidence 766778999999999999999999999885 899999864 22322221111110111234433333333333
Q ss_pred -------CCcEEEEecCCCCC---CCCCh---hHHHhhhHHH----HHHHHHHHHhhcCCCcEEEEEeCChhhHHHHHHH
Q 019990 81 -------DVNIAVMVGGFPRK---EGMER---KDVMSKNVSI----YKAQASALEKHAAPNCKVLVVANPANTNALILKE 143 (332)
Q Consensus 81 -------~aDiVi~~ag~~~~---~~~~~---~~~~~~N~~~----~~~i~~~i~~~~~~~~~viv~snp~~~~~~~~~~ 143 (332)
+.|+|||.||.... ...+. ...+..|+.. ++.+++.+++.. ..++|++|+....
T Consensus 72 ~~~~~~g~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~--~~~iv~~sS~~~~------- 142 (281)
T 3m1a_A 72 DVLARYGRVDVLVNNAGRTQVGAFEETTERELRDLFELHVFGPARLTRALLPQMRERG--SGSVVNISSFGGQ------- 142 (281)
T ss_dssp HHHHHHSCCSEEEECCCCEEECCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHT--CEEEEEECCGGGT-------
T ss_pred HHHHhCCCCCEEEECCCcCCCCChhhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC--CCEEEEEcCcccc-------
Confidence 78999999987321 11222 2356778877 677777777653 4577777764321
Q ss_pred HCCCCCCCcEEEeecccHHHHHHHHHHHc
Q 019990 144 FAPSIPAKNITCLTRLDHNRAMGQISERL 172 (332)
Q Consensus 144 ~~~~~~~~~i~~~t~l~~~r~~~~~a~~~ 172 (332)
.+.++...|+.+|...+.+...+++.+
T Consensus 143 --~~~~~~~~Y~~sK~a~~~~~~~la~e~ 169 (281)
T 3m1a_A 143 --LSFAGFSAYSATKAALEQLSEGLADEV 169 (281)
T ss_dssp --CCCTTCHHHHHHHHHHHHHHHHHHHHH
T ss_pred --CCCCCchHHHHHHHHHHHHHHHHHHHh
Confidence 234445578888888888888888884
|
| >1n2s_A DTDP-4-, DTDP-glucose oxidoreductase; rossman-fold, sugar-nucleotide-binding domain; HET: NAD; 2.00A {Salmonella enterica subsp} SCOP: c.2.1.2 PDB: 1kc1_A* 1kc3_A* 1kbz_A* | Back alignment and structure |
|---|
Probab=99.16 E-value=8.1e-12 Score=112.76 Aligned_cols=156 Identities=15% Similarity=0.145 Sum_probs=100.8
Q ss_pred cEEEEEcCCChhHHHHHHHHHhcccCCCCCCeEEEEEecccchhhhhhhHhhhhhhccCCccceEEeCCHHHHhCC--Cc
Q 019990 6 LRVLVTGAAGQIGYALVPMIARGIMLGPDQPVILHMLDIEPAAEALNGVKMELIDAAFPLLKGVVATTDVVEACKD--VN 83 (332)
Q Consensus 6 ~kI~VtGaaG~IGs~l~~~L~~~~~~~~~~~~~i~l~D~~~~~~~~~~~~~dl~~~~~~~~~~v~~~~~~~~a~~~--aD 83 (332)
|||+||||+||||++++..|+ .++ +|+.++++. .. ...|+....++.+++++ +|
T Consensus 1 m~ilVtGatG~iG~~l~~~L~-~g~-------~V~~~~r~~--~~--------------~~~D~~d~~~~~~~~~~~~~d 56 (299)
T 1n2s_A 1 MNILLFGKTGQVGWELQRSLA-PVG-------NLIALDVHS--KE--------------FCGDFSNPKGVAETVRKLRPD 56 (299)
T ss_dssp CEEEEECTTSHHHHHHHHHTT-TTS-------EEEEECTTC--SS--------------SCCCTTCHHHHHHHHHHHCCS
T ss_pred CeEEEECCCCHHHHHHHHHhh-cCC-------eEEEecccc--cc--------------ccccCCCHHHHHHHHHhcCCC
Confidence 489999999999999999998 665 899998743 00 11223223345566665 99
Q ss_pred EEEEecCCCCC--CCCChhHHHhhhHHHHHHHHHHHHhhcCCCcEEEEEeCChhhHHH----HHHHHCCCCCCCcEEEee
Q 019990 84 IAVMVGGFPRK--EGMERKDVMSKNVSIYKAQASALEKHAAPNCKVLVVANPANTNAL----ILKEFAPSIPAKNITCLT 157 (332)
Q Consensus 84 iVi~~ag~~~~--~~~~~~~~~~~N~~~~~~i~~~i~~~~~~~~~viv~snp~~~~~~----~~~~~~~~~~~~~i~~~t 157 (332)
+|||+|+.... ...+..+.+..|+..+.++++++++.+ +++|++|+.. +... .+.+. ....|...|+.+
T Consensus 57 ~vih~a~~~~~~~~~~~~~~~~~~n~~~~~~l~~a~~~~~---~~~v~~SS~~-vy~~~~~~~~~E~-~~~~p~~~Y~~s 131 (299)
T 1n2s_A 57 VIVNAAAHTAVDKAESEPELAQLLNATSVEAIAKAANETG---AWVVHYSTDY-VFPGTGDIPWQET-DATSPLNVYGKT 131 (299)
T ss_dssp EEEECCCCCCHHHHTTCHHHHHHHHTHHHHHHHHHHTTTT---CEEEEEEEGG-GSCCCTTCCBCTT-SCCCCSSHHHHH
T ss_pred EEEECcccCCHhhhhcCHHHHHHHHHHHHHHHHHHHHHcC---CcEEEEeccc-EEeCCCCCCCCCC-CCCCCccHHHHH
Confidence 99999986431 112345677889999999999998864 3677766531 1000 00111 122334467777
Q ss_pred cccHHHHHHHHHHHcCCCCCCeeeeEEEecCCCceee
Q 019990 158 RLDHNRAMGQISERLKVHVSDVKNVIIWGNHSSTQYP 194 (332)
Q Consensus 158 ~l~~~r~~~~~a~~~~v~~~~v~~~~V~G~hg~~~v~ 194 (332)
|...+++...+ ..+...+|...|||+...+.++
T Consensus 132 K~~~E~~~~~~----~~~~~ilRp~~v~G~~~~~~~~ 164 (299)
T 1n2s_A 132 KLAGEKALQDN----CPKHLIFRTSWVYAGKGNNFAK 164 (299)
T ss_dssp HHHHHHHHHHH----CSSEEEEEECSEECSSSCCHHH
T ss_pred HHHHHHHHHHh----CCCeEEEeeeeecCCCcCcHHH
Confidence 77777665544 3466778988899986544443
|
| >3dqp_A Oxidoreductase YLBE; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; 1.40A {Lactococcus lactis subsp} | Back alignment and structure |
|---|
Probab=99.14 E-value=1.6e-11 Score=106.02 Aligned_cols=155 Identities=8% Similarity=0.060 Sum_probs=100.1
Q ss_pred cEEEEEcCCChhHHHHHHHHHhcccCCCCCCeEEEEEecccchhhhhhhHhhhhhhccCCccceEE-eCCHHHHhCCCcE
Q 019990 6 LRVLVTGAAGQIGYALVPMIARGIMLGPDQPVILHMLDIEPAAEALNGVKMELIDAAFPLLKGVVA-TTDVVEACKDVNI 84 (332)
Q Consensus 6 ~kI~VtGaaG~IGs~l~~~L~~~~~~~~~~~~~i~l~D~~~~~~~~~~~~~dl~~~~~~~~~~v~~-~~~~~~a~~~aDi 84 (332)
|||+||||+|+||++++..|++.|. +|++++++.. .+.. +... .....|+.. ..++.++++++|+
T Consensus 1 M~ilItGatG~iG~~l~~~L~~~g~-------~V~~~~R~~~--~~~~----~~~~-~~~~~D~~d~~~~~~~~~~~~d~ 66 (219)
T 3dqp_A 1 MKIFIVGSTGRVGKSLLKSLSTTDY-------QIYAGARKVE--QVPQ----YNNV-KAVHFDVDWTPEEMAKQLHGMDA 66 (219)
T ss_dssp CEEEEESTTSHHHHHHHHHHTTSSC-------EEEEEESSGG--GSCC----CTTE-EEEECCTTSCHHHHHTTTTTCSE
T ss_pred CeEEEECCCCHHHHHHHHHHHHCCC-------EEEEEECCcc--chhh----cCCc-eEEEecccCCHHHHHHHHcCCCE
Confidence 4899999999999999999998875 8999998642 1211 1111 011234444 4456777899999
Q ss_pred EEEecCCCCCCCCChhHHHhhhHHHHHHHHHHHHhhcCCCcEEEEEeCChhhHHHHHHHHCCC--CCCCcEEEeecccHH
Q 019990 85 AVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEKHAAPNCKVLVVANPANTNALILKEFAPS--IPAKNITCLTRLDHN 162 (332)
Q Consensus 85 Vi~~ag~~~~~~~~~~~~~~~N~~~~~~i~~~i~~~~~~~~~viv~snp~~~~~~~~~~~~~~--~~~~~i~~~t~l~~~ 162 (332)
|||+||.... +.++.|+..+..+++++++.+ . .++|++|+..... . ..... ..+...|+.+|...+
T Consensus 67 vi~~ag~~~~------~~~~~n~~~~~~l~~a~~~~~-~-~~iv~~SS~~~~~-~---~~~~e~~~~~~~~Y~~sK~~~e 134 (219)
T 3dqp_A 67 IINVSGSGGK------SLLKVDLYGAVKLMQAAEKAE-V-KRFILLSTIFSLQ-P---EKWIGAGFDALKDYYIAKHFAD 134 (219)
T ss_dssp EEECCCCTTS------SCCCCCCHHHHHHHHHHHHTT-C-CEEEEECCTTTTC-G---GGCCSHHHHHTHHHHHHHHHHH
T ss_pred EEECCcCCCC------CcEeEeHHHHHHHHHHHHHhC-C-CEEEEECcccccC-C---CcccccccccccHHHHHHHHHH
Confidence 9999987542 246778888999999998864 2 3667777531100 0 00000 001224566666655
Q ss_pred HHHHHHHHHcCCCCCCeeeeEEEecCC
Q 019990 163 RAMGQISERLKVHVSDVKNVIIWGNHS 189 (332)
Q Consensus 163 r~~~~~a~~~~v~~~~v~~~~V~G~hg 189 (332)
++.. +..|++...+|+..++|+..
T Consensus 135 ~~~~---~~~~i~~~ilrp~~v~g~~~ 158 (219)
T 3dqp_A 135 LYLT---KETNLDYTIIQPGALTEEEA 158 (219)
T ss_dssp HHHH---HSCCCEEEEEEECSEECSCC
T ss_pred HHHH---hccCCcEEEEeCceEecCCC
Confidence 5543 66788888899888888644
|
| >2ydy_A Methionine adenosyltransferase 2 subunit beta; oxidoreductase; 2.25A {Homo sapiens} PDB: 2ydx_A | Back alignment and structure |
|---|
Probab=99.14 E-value=7.1e-11 Score=107.42 Aligned_cols=157 Identities=17% Similarity=0.117 Sum_probs=86.4
Q ss_pred CcEEEEEcCCChhHHHHHHHHHhcccCCCCCCeEEEEEecccchhhhhhhHhhhhhhccCCccceEEeCCHHHHhCC--C
Q 019990 5 PLRVLVTGAAGQIGYALVPMIARGIMLGPDQPVILHMLDIEPAAEALNGVKMELIDAAFPLLKGVVATTDVVEACKD--V 82 (332)
Q Consensus 5 ~~kI~VtGaaG~IGs~l~~~L~~~~~~~~~~~~~i~l~D~~~~~~~~~~~~~dl~~~~~~~~~~v~~~~~~~~a~~~--a 82 (332)
+|+|+||||+||||++++..|++.|. +|++++++... . . ....|+....++.+++++ +
T Consensus 2 ~~~vlVtGatG~iG~~l~~~L~~~g~-------~V~~~~r~~~~---~-------~---~~~~Dl~d~~~~~~~~~~~~~ 61 (315)
T 2ydy_A 2 NRRVLVTGATGLLGRAVHKEFQQNNW-------HAVGCGFRRAR---P-------K---FEQVNLLDSNAVHHIIHDFQP 61 (315)
T ss_dssp CCEEEEETTTSHHHHHHHHHHHTTTC-------EEEEEC-------------------------------CHHHHHHHCC
T ss_pred CCeEEEECCCcHHHHHHHHHHHhCCC-------eEEEEccCCCC---C-------C---eEEecCCCHHHHHHHHHhhCC
Confidence 36899999999999999999998875 89999864321 0 0 122345544556666664 8
Q ss_pred cEEEEecCCCCCC--CCChhHHHhhhHHHHHHHHHHHHhhcCCCcEEEEEeCChhhHH--HHHHHHCCCCCCCcEEEeec
Q 019990 83 NIAVMVGGFPRKE--GMERKDVMSKNVSIYKAQASALEKHAAPNCKVLVVANPANTNA--LILKEFAPSIPAKNITCLTR 158 (332)
Q Consensus 83 DiVi~~ag~~~~~--~~~~~~~~~~N~~~~~~i~~~i~~~~~~~~~viv~snp~~~~~--~~~~~~~~~~~~~~i~~~t~ 158 (332)
|+|||+||..... ..+..+.+..|+..+.++++++.+.+ +++|++|+..-... ..+.+. ...++...|+.+|
T Consensus 62 d~vih~A~~~~~~~~~~~~~~~~~~n~~~~~~l~~a~~~~~---~~~v~~SS~~v~~~~~~~~~E~-~~~~~~~~Y~~sK 137 (315)
T 2ydy_A 62 HVIVHCAAERRPDVVENQPDAASQLNVDASGNLAKEAAAVG---AFLIYISSDYVFDGTNPPYREE-DIPAPLNLYGKTK 137 (315)
T ss_dssp SEEEECC-------------------CHHHHHHHHHHHHHT---CEEEEEEEGGGSCSSSCSBCTT-SCCCCCSHHHHHH
T ss_pred CEEEECCcccChhhhhcCHHHHHHHHHHHHHHHHHHHHHcC---CeEEEEchHHHcCCCCCCCCCC-CCCCCcCHHHHHH
Confidence 9999999864321 12234567889999999999999874 37777765321000 000010 1123334567777
Q ss_pred ccHHHHHHHHHHHcCCCCCCeeeeEEEecCC
Q 019990 159 LDHNRAMGQISERLKVHVSDVKNVIIWGNHS 189 (332)
Q Consensus 159 l~~~r~~~~~a~~~~v~~~~v~~~~V~G~hg 189 (332)
...+++... ++.+...+|...|||+..
T Consensus 138 ~~~e~~~~~----~~~~~~~lR~~~v~G~~~ 164 (315)
T 2ydy_A 138 LDGEKAVLE----NNLGAAVLRIPILYGEVE 164 (315)
T ss_dssp HHHHHHHHH----HCTTCEEEEECSEECSCS
T ss_pred HHHHHHHHH----hCCCeEEEeeeeeeCCCC
Confidence 766665543 466777889888998754
|
| >2hrz_A AGR_C_4963P, nucleoside-diphosphate-sugar epimerase; agrobacterium tumefa structural genomics, PSI-2, protein structure initiative; 1.85A {Agrobacterium tumefaciens} | Back alignment and structure |
|---|
Probab=99.13 E-value=3.1e-11 Score=111.07 Aligned_cols=178 Identities=11% Similarity=0.049 Sum_probs=109.4
Q ss_pred CCcEEEEEcCCChhHHHHHHHHHhcccCCCCCCeEEEEEecccchhhhhhhHhhhhhhcc-CCccceEEeCCHHHHh-CC
Q 019990 4 NPLRVLVTGAAGQIGYALVPMIARGIMLGPDQPVILHMLDIEPAAEALNGVKMELIDAAF-PLLKGVVATTDVVEAC-KD 81 (332)
Q Consensus 4 ~~~kI~VtGaaG~IGs~l~~~L~~~~~~~~~~~~~i~l~D~~~~~~~~~~~~~dl~~~~~-~~~~~v~~~~~~~~a~-~~ 81 (332)
++|+|+||||+||||++++..|++.|..+..+..+|+++|+.... ... ...... ....|+....++.+++ .+
T Consensus 13 ~~~~vlVtGa~G~iG~~l~~~L~~~g~~~~r~~~~V~~~~r~~~~--~~~----~~~~~~~~~~~Dl~d~~~~~~~~~~~ 86 (342)
T 2hrz_A 13 QGMHIAIIGAAGMVGRKLTQRLVKDGSLGGKPVEKFTLIDVFQPE--APA----GFSGAVDARAADLSAPGEAEKLVEAR 86 (342)
T ss_dssp SCEEEEEETTTSHHHHHHHHHHHHHCEETTEEEEEEEEEESSCCC--CCT----TCCSEEEEEECCTTSTTHHHHHHHTC
T ss_pred cCCEEEEECCCcHHHHHHHHHHHhcCCcccCCCceEEEEEccCCc--ccc----ccCCceeEEEcCCCCHHHHHHHHhcC
Confidence 467999999999999999999998771000000178889875421 110 000000 1123444344556667 48
Q ss_pred CcEEEEecCCCCCC-CCChhHHHhhhHHHHHHHHHHHHhhcC---CCcEEEEEeCChhhHHH----HHHHHCCCCCCCcE
Q 019990 82 VNIAVMVGGFPRKE-GMERKDVMSKNVSIYKAQASALEKHAA---PNCKVLVVANPANTNAL----ILKEFAPSIPAKNI 153 (332)
Q Consensus 82 aDiVi~~ag~~~~~-~~~~~~~~~~N~~~~~~i~~~i~~~~~---~~~~viv~snp~~~~~~----~~~~~~~~~~~~~i 153 (332)
+|+|||+||..... ..+....++.|+..+.++++++.+.+. +..++|++|+.. .... .+.+. ....+...
T Consensus 87 ~d~vih~A~~~~~~~~~~~~~~~~~nv~g~~~l~~~~~~~~~~~~~~~~iv~~SS~~-~~~~~~~~~~~E~-~~~~~~~~ 164 (342)
T 2hrz_A 87 PDVIFHLAAIVSGEAELDFDKGYRINLDGTRYLFDAIRIANGKDGYKPRVVFTSSIA-VFGAPLPYPIPDE-FHTTPLTS 164 (342)
T ss_dssp CSEEEECCCCCHHHHHHCHHHHHHHHTHHHHHHHHHHHHHHHHHCCCCEEEEEEEGG-GCCSSCCSSBCTT-CCCCCSSH
T ss_pred CCEEEECCccCcccccccHHHHHHHHHHHHHHHHHHHHhcccccCCCcEEEEeCchH-hhCCCCCCCcCCC-CCCCCcch
Confidence 99999999864310 112345678899999999999987630 123666666431 1000 00010 11224446
Q ss_pred EEeecccHHHHHHHHHHHcCCCCCCeeeeEEEecCC
Q 019990 154 TCLTRLDHNRAMGQISERLKVHVSDVKNVIIWGNHS 189 (332)
Q Consensus 154 ~~~t~l~~~r~~~~~a~~~~v~~~~v~~~~V~G~hg 189 (332)
|+.+|...+++...+++..+++...+|...|+|..|
T Consensus 165 Y~~sK~~~e~~~~~~~~~~~~~~~~ir~~~v~g~pg 200 (342)
T 2hrz_A 165 YGTQKAICELLLSDYSRRGFFDGIGIRLPTICIRPG 200 (342)
T ss_dssp HHHHHHHHHHHHHHHHHTTSCEEEEEEECEETTCCS
T ss_pred HHHHHHHHHHHHHHHHHhcCCCceeEEeeeEEecCC
Confidence 888999999998888888888888888878888433
|
| >2bll_A Protein YFBG; decarboxylase, short chain dehydrogenase, L-ARA4N biosynthes methyltransferase, transferase; 2.3A {Escherichia coli} SCOP: c.2.1.2 PDB: 1u9j_A 1z73_A 1z75_A 1z7b_A 1z74_A | Back alignment and structure |
|---|
Probab=99.13 E-value=5e-11 Score=109.56 Aligned_cols=168 Identities=14% Similarity=0.121 Sum_probs=108.4
Q ss_pred cEEEEEcCCChhHHHHHHHHHhc-ccCCCCCCeEEEEEecccchhhhhhhHhhhhhhcc-CCccceEEeC-CHHHHhCCC
Q 019990 6 LRVLVTGAAGQIGYALVPMIARG-IMLGPDQPVILHMLDIEPAAEALNGVKMELIDAAF-PLLKGVVATT-DVVEACKDV 82 (332)
Q Consensus 6 ~kI~VtGaaG~IGs~l~~~L~~~-~~~~~~~~~~i~l~D~~~~~~~~~~~~~dl~~~~~-~~~~~v~~~~-~~~~a~~~a 82 (332)
|||+||||+||||++++..|++. +. +|++++++.. ..... +..... ....|+.... .+.++++++
T Consensus 1 m~vlVtGatG~iG~~l~~~L~~~~g~-------~V~~~~r~~~--~~~~~---~~~~~~~~~~~D~~~~~~~~~~~~~~~ 68 (345)
T 2bll_A 1 MRVLILGVNGFIGNHLTERLLREDHY-------EVYGLDIGSD--AISRF---LNHPHFHFVEGDISIHSEWIEYHVKKC 68 (345)
T ss_dssp CEEEEETCSSHHHHHHHHHHHHSTTC-------EEEEEESCCG--GGGGG---TTCTTEEEEECCTTTCSHHHHHHHHHC
T ss_pred CeEEEECCCcHHHHHHHHHHHHhCCC-------EEEEEeCCcc--hHHHh---hcCCCeEEEeccccCcHHHHHhhccCC
Confidence 48999999999999999999986 65 8999998542 11110 001000 1112333212 245667899
Q ss_pred cEEEEecCCCCCC--CCChhHHHhhhHHHHHHHHHHHHhhcCCCcEEEEEeCChhhHHH----HHHHHCCC-----C-CC
Q 019990 83 NIAVMVGGFPRKE--GMERKDVMSKNVSIYKAQASALEKHAAPNCKVLVVANPANTNAL----ILKEFAPS-----I-PA 150 (332)
Q Consensus 83 DiVi~~ag~~~~~--~~~~~~~~~~N~~~~~~i~~~i~~~~~~~~~viv~snp~~~~~~----~~~~~~~~-----~-~~ 150 (332)
|+|||+||..... ..+..+.+..|+..+.++++++.+.+ .++|++|+.. +... .+.+..+. . ++
T Consensus 69 d~vih~A~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~---~~~v~~SS~~-v~g~~~~~~~~e~~~~~~~~~~~~~ 144 (345)
T 2bll_A 69 DVVLPLVAIATPIEYTRNPLRVFELDFEENLRIIRYCVKYR---KRIIFPSTSE-VYGMCSDKYFDEDHSNLIVGPVNKP 144 (345)
T ss_dssp SEEEECBCCCCHHHHHHSHHHHHHHHTHHHHHHHHHHHHTT---CEEEEECCGG-GGBTCCCSSBCTTTCCCBCCCTTCG
T ss_pred CEEEEcccccCccchhcCHHHHHHHHHHHHHHHHHHHHHhC---CeEEEEecHH-HcCCCCCCCcCCcccccccCcccCc
Confidence 9999999864311 11234567889999999999998863 4677777531 1000 00010000 0 11
Q ss_pred CcEEEeecccHHHHHHHHHHHcCCCCCCeeeeEEEecCC
Q 019990 151 KNITCLTRLDHNRAMGQISERLKVHVSDVKNVIIWGNHS 189 (332)
Q Consensus 151 ~~i~~~t~l~~~r~~~~~a~~~~v~~~~v~~~~V~G~hg 189 (332)
...|+.++...+++...+++..|++...+|...|||+..
T Consensus 145 ~~~Y~~sK~~~e~~~~~~~~~~~~~~~ilrp~~v~G~~~ 183 (345)
T 2bll_A 145 RWIYSVSKQLLDRVIWAYGEKEGLQFTLFRPFNWMGPRL 183 (345)
T ss_dssp GGHHHHHHHHHHHHHHHHHHHHCCCEEEEEECSEECSSC
T ss_pred ccccHHHHHHHHHHHHHHHHhcCCCEEEEcCCcccCCCc
Confidence 225788899999998888888899999999999999753
|
| >3ajr_A NDP-sugar epimerase; L-threonine dehydrogenase, L-3- hydroxynorvaline, oxidoreductase; HET: NAD; 1.77A {Thermoplasma volcanium} PDB: 3a9w_A* 3a4v_A* 3a1n_A* | Back alignment and structure |
|---|
Probab=99.12 E-value=1.3e-11 Score=112.44 Aligned_cols=161 Identities=16% Similarity=0.137 Sum_probs=106.7
Q ss_pred EEEEEcCCChhHHHHHHHHHhc--ccCCCCCCeEEEEEecccchhhhhhhHhhhhhhccCCccceEEeCCHHHHhC--CC
Q 019990 7 RVLVTGAAGQIGYALVPMIARG--IMLGPDQPVILHMLDIEPAAEALNGVKMELIDAAFPLLKGVVATTDVVEACK--DV 82 (332)
Q Consensus 7 kI~VtGaaG~IGs~l~~~L~~~--~~~~~~~~~~i~l~D~~~~~~~~~~~~~dl~~~~~~~~~~v~~~~~~~~a~~--~a 82 (332)
||+||||+||||++++..|++. +. +|+++|++... .. .. .....|+....++.++++ ++
T Consensus 1 ~vlVtGatG~iG~~l~~~L~~~~~g~-------~V~~~~r~~~~--~~-------~~-~~~~~D~~d~~~~~~~~~~~~~ 63 (317)
T 3ajr_A 1 MILVTGSSGQIGTELVPYLAEKYGKK-------NVIASDIVQRD--TG-------GI-KFITLDVSNRDEIDRAVEKYSI 63 (317)
T ss_dssp CEEEESTTSTTHHHHHHHHHHHHCGG-------GEEEEESSCCC--CT-------TC-CEEECCTTCHHHHHHHHHHTTC
T ss_pred CEEEEcCCcHHHHHHHHHHHHhcCCC-------EEEEecCCCcc--cc-------Cc-eEEEecCCCHHHHHHHHhhcCC
Confidence 5999999999999999999886 54 78888875321 11 00 011123333344556666 89
Q ss_pred cEEEEecCCCCCC-CCChhHHHhhhHHHHHHHHHHHHhhcCCCcEEEEEeCChhhHHH----HHHHHCCCCCCCcEEEee
Q 019990 83 NIAVMVGGFPRKE-GMERKDVMSKNVSIYKAQASALEKHAAPNCKVLVVANPANTNAL----ILKEFAPSIPAKNITCLT 157 (332)
Q Consensus 83 DiVi~~ag~~~~~-~~~~~~~~~~N~~~~~~i~~~i~~~~~~~~~viv~snp~~~~~~----~~~~~~~~~~~~~i~~~t 157 (332)
|+|||+|+..... ..+..+.++.|+..+.++++++.+.+ . .++|++|+..-.... ...+ .+...|...|+.+
T Consensus 64 d~vih~a~~~~~~~~~~~~~~~~~n~~~~~~l~~a~~~~~-~-~~~v~~SS~~~~~~~~~~~~~~e-~~~~~p~~~Y~~s 140 (317)
T 3ajr_A 64 DAIFHLAGILSAKGEKDPALAYKVNMNGTYNILEAAKQHR-V-EKVVIPSTIGVFGPETPKNKVPS-ITITRPRTMFGVT 140 (317)
T ss_dssp CEEEECCCCCHHHHHHCHHHHHHHHHHHHHHHHHHHHHTT-C-CEEEEEEEGGGCCTTSCSSSBCS-SSCCCCCSHHHHH
T ss_pred cEEEECCcccCCccccChHHHhhhhhHHHHHHHHHHHHcC-C-CEEEEecCHHHhCCCCCCCCccc-cccCCCCchHHHH
Confidence 9999999864211 11234567889999999999998864 2 266666643210000 0001 0112234568889
Q ss_pred cccHHHHHHHHHHHcCCCCCCeeeeEEEec
Q 019990 158 RLDHNRAMGQISERLKVHVSDVKNVIIWGN 187 (332)
Q Consensus 158 ~l~~~r~~~~~a~~~~v~~~~v~~~~V~G~ 187 (332)
|...+++...+++..|++...+|...+||+
T Consensus 141 K~~~e~~~~~~~~~~~~~~~~lR~~~~~g~ 170 (317)
T 3ajr_A 141 KIAAELLGQYYYEKFGLDVRSLRYPGIISY 170 (317)
T ss_dssp HHHHHHHHHHHHHHHCCEEEEEEECEEECS
T ss_pred HHHHHHHHHHHHHhcCCeEEEEecCcEecc
Confidence 999999988888889999999998888995
|
| >4dqv_A Probable peptide synthetase NRP (peptide synthase; GXXGXXG motif, rossmann fold, short chain dehydrogenase/REDU family, reductase; 2.30A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=99.11 E-value=1.7e-10 Score=111.46 Aligned_cols=169 Identities=13% Similarity=0.053 Sum_probs=108.9
Q ss_pred CCcEEEEEcCCChhHHHHHHHHHhc---ccCCCCCCeEEEEEecccchhhhhhhH-hhhhh--------------hcc-C
Q 019990 4 NPLRVLVTGAAGQIGYALVPMIARG---IMLGPDQPVILHMLDIEPAAEALNGVK-MELID--------------AAF-P 64 (332)
Q Consensus 4 ~~~kI~VtGaaG~IGs~l~~~L~~~---~~~~~~~~~~i~l~D~~~~~~~~~~~~-~dl~~--------------~~~-~ 64 (332)
++++|+||||+||||++++..|++. +. +|+++++........... ..+.. ... .
T Consensus 72 ~~~~VLVTGatG~IG~~l~~~Ll~~~~~g~-------~V~~l~R~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~v~~ 144 (478)
T 4dqv_A 72 ELRTVLLTGATGFLGRYLVLELLRRLDVDG-------RLICLVRAESDEDARRRLEKTFDSGDPELLRHFKELAADRLEV 144 (478)
T ss_dssp CCCEEEEECTTSHHHHHHHHHHHHHSCTTC-------EEEEEECSSSHHHHHHHHHGGGCSSCHHHHHHHHHHHTTTEEE
T ss_pred CCCEEEEECCCcHHHHHHHHHHHhcCCCCC-------EEEEEECCCCcHHHHHHHHHHHHhcchhhhhhhhhhccCceEE
Confidence 5789999999999999999999887 54 899999864321111000 00000 000 1
Q ss_pred CccceE------EeCCHHHHhCCCcEEEEecCCCCCCCCChhHHHhhhHHHHHHHHHHHHhhcCCCcEEEEEeCChhhHH
Q 019990 65 LLKGVV------ATTDVVEACKDVNIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEKHAAPNCKVLVVANPANTNA 138 (332)
Q Consensus 65 ~~~~v~------~~~~~~~a~~~aDiVi~~ag~~~~~~~~~~~~~~~N~~~~~~i~~~i~~~~~~~~~viv~snp~~~~~ 138 (332)
...|+. ....+.+.++++|+|||+|+.... .+..+.+..|+.++.++++++.+.+ .. ++|++|+- .+..
T Consensus 145 v~~Dl~~~~~gld~~~~~~~~~~~D~Vih~Aa~~~~--~~~~~~~~~Nv~gt~~ll~aa~~~~-~~-~~V~iSS~-~v~~ 219 (478)
T 4dqv_A 145 VAGDKSEPDLGLDQPMWRRLAETVDLIVDSAAMVNA--FPYHELFGPNVAGTAELIRIALTTK-LK-PFTYVSTA-DVGA 219 (478)
T ss_dssp EECCTTSGGGGCCHHHHHHHHHHCCEEEECCSSCSB--SSCCEEHHHHHHHHHHHHHHHTSSS-CC-CEEEEEEG-GGGT
T ss_pred EEeECCCcccCCCHHHHHHHHcCCCEEEECccccCC--cCHHHHHHHHHHHHHHHHHHHHhCC-CC-eEEEEeeh-hhcC
Confidence 112332 112345567799999999987543 2334567889999999999998864 32 55666642 1100
Q ss_pred HHHHHHCCCCCC-----------------CcEEEeecccHHHHHHHHHHHcCCCCCCeeeeEEEec
Q 019990 139 LILKEFAPSIPA-----------------KNITCLTRLDHNRAMGQISERLKVHVSDVKNVIIWGN 187 (332)
Q Consensus 139 ~~~~~~~~~~~~-----------------~~i~~~t~l~~~r~~~~~a~~~~v~~~~v~~~~V~G~ 187 (332)
. .. ...+.. ...|+.+|...+++...+++..|++...+|..+|||+
T Consensus 220 ~--~~-~~~~~E~~~~~p~~~~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~~gi~~~ivRpg~v~G~ 282 (478)
T 4dqv_A 220 A--IE-PSAFTEDADIRVISPTRTVDGGWAGGYGTSKWAGEVLLREANDLCALPVAVFRCGMILAD 282 (478)
T ss_dssp T--SC-TTTCCSSSCHHHHCCEEECCTTSEECHHHHHHHHHHHHHHHHHHHCCCEEEEEECEEECC
T ss_pred c--cC-CCCcCCcccccccCcccccccccccchHHHHHHHHHHHHHHHHHhCCCeEEEECceeeCC
Confidence 0 00 000000 1237888999999998888888999999999999996
|
| >1n7h_A GDP-D-mannose-4,6-dehydratase; rossmann fold, SDR, short-chain dehydrogenase/reductase, LYA; HET: NDP GDP; 1.80A {Arabidopsis thaliana} SCOP: c.2.1.2 PDB: 1n7g_A* | Back alignment and structure |
|---|
Probab=99.09 E-value=2.8e-11 Score=113.25 Aligned_cols=174 Identities=9% Similarity=-0.052 Sum_probs=108.1
Q ss_pred cEEEEEcCCChhHHHHHHHHHhcccCCCCCCeEEEEEecccchh---hhhhhHhhhh--hh-cc-CCccceEEeCCHHHH
Q 019990 6 LRVLVTGAAGQIGYALVPMIARGIMLGPDQPVILHMLDIEPAAE---ALNGVKMELI--DA-AF-PLLKGVVATTDVVEA 78 (332)
Q Consensus 6 ~kI~VtGaaG~IGs~l~~~L~~~~~~~~~~~~~i~l~D~~~~~~---~~~~~~~dl~--~~-~~-~~~~~v~~~~~~~~a 78 (332)
++|+||||+||||++++..|++.|. +|++++++.... .+.....++. .. .. ....|+....++.++
T Consensus 29 k~vlVtGatG~IG~~l~~~L~~~g~-------~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~ 101 (381)
T 1n7h_A 29 KIALITGITGQDGSYLTEFLLGKGY-------EVHGLIRRSSNFNTQRINHIYIDPHNVNKALMKLHYADLTDASSLRRW 101 (381)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTC-------EEEEEECCCSSCCCTTTTTTC--------CCEEEEECCTTCHHHHHHH
T ss_pred CeEEEEcCCchHHHHHHHHHHHCCC-------EEEEEecCCccccchhhhhhhhccccccccceEEEECCCCCHHHHHHH
Confidence 5899999999999999999998875 899998754210 0111100000 00 00 011233333345556
Q ss_pred hCC--CcEEEEecCCCCCC--CCChhHHHhhhHHHHHHHHHHHHhhcC---CCcEEEEEeCChhhHHH---HHHHHCCCC
Q 019990 79 CKD--VNIAVMVGGFPRKE--GMERKDVMSKNVSIYKAQASALEKHAA---PNCKVLVVANPANTNAL---ILKEFAPSI 148 (332)
Q Consensus 79 ~~~--aDiVi~~ag~~~~~--~~~~~~~~~~N~~~~~~i~~~i~~~~~---~~~~viv~snp~~~~~~---~~~~~~~~~ 148 (332)
+++ +|+|||+||..... ..+....+..|+..+..+++++.+.+. +.+++|++|+.. +... .+.+. ...
T Consensus 102 ~~~~~~d~Vih~A~~~~~~~~~~~~~~~~~~nv~~~~~l~~a~~~~~~~~~~~~~~v~~SS~~-vyg~~~~~~~E~-~~~ 179 (381)
T 1n7h_A 102 IDVIKPDEVYNLAAQSHVAVSFEIPDYTADVVATGALRLLEAVRSHTIDSGRTVKYYQAGSSE-MFGSTPPPQSET-TPF 179 (381)
T ss_dssp HHHHCCSEEEECCSCCCHHHHHHSHHHHHHHHTHHHHHHHHHHHHHHHHHCCCCEEEEEEEGG-GGTTSCSSBCTT-SCC
T ss_pred HHhcCCCEEEECCcccCccccccCHHHHHHHHHHHHHHHHHHHHHhCCccCCccEEEEeCcHH-HhCCCCCCCCCC-CCC
Confidence 664 69999999864311 112345678899999999999988641 124777776532 1000 00110 123
Q ss_pred CCCcEEEeecccHHHHHHHHHHHcCCCCCCeeeeEEEecC
Q 019990 149 PAKNITCLTRLDHNRAMGQISERLKVHVSDVKNVIIWGNH 188 (332)
Q Consensus 149 ~~~~i~~~t~l~~~r~~~~~a~~~~v~~~~v~~~~V~G~h 188 (332)
++...|+.++...+++...+++.++++...++.+++||+.
T Consensus 180 ~~~~~Y~~sK~~~E~~~~~~~~~~~~~~~~~r~~~~~gp~ 219 (381)
T 1n7h_A 180 HPRSPYAASKCAAHWYTVNYREAYGLFACNGILFNHESPR 219 (381)
T ss_dssp CCCSHHHHHHHHHHHHHHHHHHHHCCEEEEEEECCEECTT
T ss_pred CCCCchHHHHHHHHHHHHHHHHHhCCcEEEEEeCceeCCC
Confidence 4445688899999999888888889887777877888864
|
| >1z45_A GAL10 bifunctional protein; epimerase, mutarotase, metabolism, isomerase; HET: GAL NAD GUD; 1.85A {Saccharomyces cerevisiae} SCOP: b.30.5.4 c.2.1.2 | Back alignment and structure |
|---|
Probab=99.09 E-value=5.8e-11 Score=119.99 Aligned_cols=172 Identities=13% Similarity=0.059 Sum_probs=110.7
Q ss_pred CCcEEEEEcCCChhHHHHHHHHHhcccCCCCCCeEEEEEecccchhhhhhhHhhhh---hhccC-CccceEEeCCHHHHh
Q 019990 4 NPLRVLVTGAAGQIGYALVPMIARGIMLGPDQPVILHMLDIEPAAEALNGVKMELI---DAAFP-LLKGVVATTDVVEAC 79 (332)
Q Consensus 4 ~~~kI~VtGaaG~IGs~l~~~L~~~~~~~~~~~~~i~l~D~~~~~~~~~~~~~dl~---~~~~~-~~~~v~~~~~~~~a~ 79 (332)
++++|+||||+||||++++..|++.+. +|+++|+.... ......++. ..... ...|+....++.+++
T Consensus 10 ~~~~ilVTGatG~IG~~l~~~L~~~G~-------~V~~~~r~~~~--~~~~~~~l~~~~~~~v~~v~~Dl~d~~~l~~~~ 80 (699)
T 1z45_A 10 TSKIVLVTGGAGYIGSHTVVELIENGY-------DCVVADNLSNS--TYDSVARLEVLTKHHIPFYEVDLCDRKGLEKVF 80 (699)
T ss_dssp -CCEEEEETTTSHHHHHHHHHHHHTTC-------EEEEEECCSSC--CTHHHHHHHHHHTSCCCEEECCTTCHHHHHHHH
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHCcC-------EEEEEECCCcc--hHHHHHHHhhccCCceEEEEcCCCCHHHHHHHH
Confidence 457999999999999999999998875 89999875321 111111111 11111 123444344555666
Q ss_pred C--CCcEEEEecCCCCCC--CCChhHHHhhhHHHHHHHHHHHHhhcCCCcEEEEEeCChhhHHH--------HHHHHCCC
Q 019990 80 K--DVNIAVMVGGFPRKE--GMERKDVMSKNVSIYKAQASALEKHAAPNCKVLVVANPANTNAL--------ILKEFAPS 147 (332)
Q Consensus 80 ~--~aDiVi~~ag~~~~~--~~~~~~~~~~N~~~~~~i~~~i~~~~~~~~~viv~snp~~~~~~--------~~~~~~~~ 147 (332)
+ ++|+|||+||..... .....+.+..|+..+.++++++++.+ . .++|++|+.. +... .+.+. ..
T Consensus 81 ~~~~~D~Vih~A~~~~~~~~~~~~~~~~~~Nv~gt~~ll~a~~~~~-~-~~iV~~SS~~-vyg~~~~~~~~~~~~E~-~~ 156 (699)
T 1z45_A 81 KEYKIDSVIHFAGLKAVGESTQIPLRYYHNNILGTVVLLELMQQYN-V-SKFVFSSSAT-VYGDATRFPNMIPIPEE-CP 156 (699)
T ss_dssp HHSCCCEEEECCSCCCHHHHHHSHHHHHHHHHHHHHHHHHHHHHHT-C-CEEEEEEEGG-GGCCGGGSTTCCSBCTT-SC
T ss_pred HhCCCCEEEECCcccCcCccccCHHHHHHHHHHHHHHHHHHHHHcC-C-CEEEEECcHH-HhCCCccccccCCcccc-CC
Confidence 6 899999999864311 01224567889999999999998874 2 3666666521 1100 00010 11
Q ss_pred CCCCcEEEeecccHHHHHHHHHHH--cCCCCCCeeeeEEEecC
Q 019990 148 IPAKNITCLTRLDHNRAMGQISER--LKVHVSDVKNVIIWGNH 188 (332)
Q Consensus 148 ~~~~~i~~~t~l~~~r~~~~~a~~--~~v~~~~v~~~~V~G~h 188 (332)
..+...|+.+|...+++...+++. .+++...+|..+|||++
T Consensus 157 ~~p~~~Y~~sK~~~E~~~~~~~~~~~~g~~~~ilR~~~vyG~~ 199 (699)
T 1z45_A 157 LGPTNPYGHTKYAIENILNDLYNSDKKSWKFAILRYFNPIGAH 199 (699)
T ss_dssp CCCCSHHHHHHHHHHHHHHHHHHHSTTSCEEEEEEECEEECCC
T ss_pred CCCCChHHHHHHHHHHHHHHHHHhccCCCcEEEEEeccccCCC
Confidence 223346788899999988888777 68899999999999975
|
| >1vl0_A DTDP-4-dehydrorhamnose reductase, RFBD ortholog; structural joint center for structural genomics, JCSG, protein structu initiative; HET: NAI UNL; 2.05A {Clostridium acetobutylicum} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=99.08 E-value=4.4e-11 Score=107.57 Aligned_cols=153 Identities=14% Similarity=0.176 Sum_probs=99.9
Q ss_pred CcEEEEEcCCChhHHHHHHHHHhcccCCCCCCeEEEEEecccchhhhhhhHhhhhhhccCCccceEEeCCHHHHhC--CC
Q 019990 5 PLRVLVTGAAGQIGYALVPMIARGIMLGPDQPVILHMLDIEPAAEALNGVKMELIDAAFPLLKGVVATTDVVEACK--DV 82 (332)
Q Consensus 5 ~~kI~VtGaaG~IGs~l~~~L~~~~~~~~~~~~~i~l~D~~~~~~~~~~~~~dl~~~~~~~~~~v~~~~~~~~a~~--~a 82 (332)
++||+||||+||||++++..|++.|. +|+.++++. .|+.+ ..++.++++ ++
T Consensus 12 ~~~vlVtGatG~iG~~l~~~L~~~g~-------~V~~~~r~~---------~Dl~d-----------~~~~~~~~~~~~~ 64 (292)
T 1vl0_A 12 HMKILITGANGQLGREIQKQLKGKNV-------EVIPTDVQD---------LDITN-----------VLAVNKFFNEKKP 64 (292)
T ss_dssp CEEEEEESTTSHHHHHHHHHHTTSSE-------EEEEECTTT---------CCTTC-----------HHHHHHHHHHHCC
T ss_pred cceEEEECCCChHHHHHHHHHHhCCC-------eEEeccCcc---------CCCCC-----------HHHHHHHHHhcCC
Confidence 58999999999999999999998775 899988631 12221 223455566 79
Q ss_pred cEEEEecCCCCCC--CCChhHHHhhhHHHHHHHHHHHHhhcCCCcEEEEEeCChhhHHH----HHHHHCCCCCCCcEEEe
Q 019990 83 NIAVMVGGFPRKE--GMERKDVMSKNVSIYKAQASALEKHAAPNCKVLVVANPANTNAL----ILKEFAPSIPAKNITCL 156 (332)
Q Consensus 83 DiVi~~ag~~~~~--~~~~~~~~~~N~~~~~~i~~~i~~~~~~~~~viv~snp~~~~~~----~~~~~~~~~~~~~i~~~ 156 (332)
|+|||+||..... ..+..+.+..|+..+.++++++.+.+ +++|++|+.. +... .+.+. ....+...|+.
T Consensus 65 d~vih~A~~~~~~~~~~~~~~~~~~nv~~~~~l~~a~~~~~---~~iv~~SS~~-v~~~~~~~~~~E~-~~~~~~~~Y~~ 139 (292)
T 1vl0_A 65 NVVINCAAHTAVDKCEEQYDLAYKINAIGPKNLAAAAYSVG---AEIVQISTDY-VFDGEAKEPITEF-DEVNPQSAYGK 139 (292)
T ss_dssp SEEEECCCCCCHHHHHHCHHHHHHHHTHHHHHHHHHHHHHT---CEEEEEEEGG-GSCSCCSSCBCTT-SCCCCCSHHHH
T ss_pred CEEEECCccCCHHHHhcCHHHHHHHHHHHHHHHHHHHHHcC---CeEEEechHH-eECCCCCCCCCCC-CCCCCccHHHH
Confidence 9999999864311 12234567889999999999999874 3777776521 1000 00010 11223345677
Q ss_pred ecccHHHHHHHHHHHcCCCCCCeeeeEEEecCCCceee
Q 019990 157 TRLDHNRAMGQISERLKVHVSDVKNVIIWGNHSSTQYP 194 (332)
Q Consensus 157 t~l~~~r~~~~~a~~~~v~~~~v~~~~V~G~hg~~~v~ 194 (332)
+|...+++... ++.+...+|...|||+ +...++
T Consensus 140 sK~~~E~~~~~----~~~~~~~lR~~~v~G~-~~~~~~ 172 (292)
T 1vl0_A 140 TKLEGENFVKA----LNPKYYIVRTAWLYGD-GNNFVK 172 (292)
T ss_dssp HHHHHHHHHHH----HCSSEEEEEECSEESS-SSCHHH
T ss_pred HHHHHHHHHHh----hCCCeEEEeeeeeeCC-CcChHH
Confidence 77776665544 3456777898889998 544443
|
| >4f6c_A AUSA reductase domain protein; thioester reductase, oxidoreductase; 2.81A {Staphylococcus aureus} | Back alignment and structure |
|---|
Probab=99.07 E-value=4.1e-10 Score=107.09 Aligned_cols=172 Identities=12% Similarity=0.031 Sum_probs=106.4
Q ss_pred CCcEEEEEcCCChhHHHHHHHHHhcccCCCCCCeEEEEEecccchh-hhhhhHhhhhh-----------hc-cCCccceE
Q 019990 4 NPLRVLVTGAAGQIGYALVPMIARGIMLGPDQPVILHMLDIEPAAE-ALNGVKMELID-----------AA-FPLLKGVV 70 (332)
Q Consensus 4 ~~~kI~VtGaaG~IGs~l~~~L~~~~~~~~~~~~~i~l~D~~~~~~-~~~~~~~dl~~-----------~~-~~~~~~v~ 70 (332)
.+++|+||||+||||++++..|+..+. +|++++++.... .+......+.. .. .....|+.
T Consensus 68 ~~~~vlVTGatG~iG~~l~~~L~~~g~-------~V~~~~R~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~v~~v~~Dl~ 140 (427)
T 4f6c_A 68 PLGNTLLTGATGFLGAYLIEALQGYSH-------RIYCFIRADNEEIAWYKLMTNLNDYFSEETVEMMLSNIEVIVGDFE 140 (427)
T ss_dssp CCEEEEEECTTSHHHHHHHHHHTTTEE-------EEEEEEECSSHHHHHHHHHHHHHHHSCHHHHHHHHTTEEEEEECC-
T ss_pred CCCEEEEecCCcHHHHHHHHHHHcCCC-------EEEEEECCCChHHHHHHHHHHHHHhccccccccccCceEEEeCCCC
Confidence 467999999999999999999977664 899888765311 11111111111 00 11224555
Q ss_pred EeCCHHHHhCCCcEEEEecCCCCCCCCChhHHHhhhHHHHHHHHHHHHhhcCCCcEEEEEeCChhhHHH---------HH
Q 019990 71 ATTDVVEACKDVNIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEKHAAPNCKVLVVANPANTNAL---------IL 141 (332)
Q Consensus 71 ~~~~~~~a~~~aDiVi~~ag~~~~~~~~~~~~~~~N~~~~~~i~~~i~~~~~~~~~viv~snp~~~~~~---------~~ 141 (332)
....+. ++.++|+|||+|+..... .+....+..|+.++.++++++.+ . ..++|++|+-. . .. .+
T Consensus 141 d~~~l~-~~~~~d~Vih~A~~~~~~-~~~~~~~~~Nv~g~~~l~~aa~~-~--~~~~v~~SS~~-~-G~~~~~~~~~~~~ 213 (427)
T 4f6c_A 141 CMDDVV-LPENMDTIIHAGARTDHF-GDDDEFEKVNVQGTVDVIRLAQQ-H--HARLIYVSTIS-V-GTYFDIDTEDVTF 213 (427)
T ss_dssp --CCCC-CSSCCSEEEECCCCC--------CHHHHHHHHHHHHHHHHHH-T--TCEEEEEEEGG-G-GSEECSSCSCCEE
T ss_pred CcccCC-CcCCCCEEEECCcccCCC-CCHHHHHHHHHHHHHHHHHHHHh-c--CCcEEEECchH-h-CCCccCCCCCccc
Confidence 444443 678999999999875432 23345778899999999999998 3 23666666421 1 00 00
Q ss_pred HHHCC--CCCCCcEEEeecccHHHHHHHHHHHcCCCCCCeeeeEEEecCCC
Q 019990 142 KEFAP--SIPAKNITCLTRLDHNRAMGQISERLKVHVSDVKNVIIWGNHSS 190 (332)
Q Consensus 142 ~~~~~--~~~~~~i~~~t~l~~~r~~~~~a~~~~v~~~~v~~~~V~G~hg~ 190 (332)
.+... ..++...|+.+|...+++...+++ .|++...+|..+|||+...
T Consensus 214 ~E~~~~~~~~~~~~Y~~sK~~~E~~~~~~~~-~g~~~~ivRpg~v~G~~~~ 263 (427)
T 4f6c_A 214 SEADVYKGQLLTSPYTRSKFYSELKVLEAVN-NGLDGRIVRVGNLTSPYNG 263 (427)
T ss_dssp CTTCSCSSCCCCSHHHHHHHHHHHHHHHHHH-TTCCEEEEEECCEESCSSS
T ss_pred cccccccCCCCCCchHHHHHHHHHHHHHHHH-cCCCEEEEeCCeeecCCCC
Confidence 01000 011334678888888888877654 6999999999999997653
|
| >3h2s_A Putative NADH-flavin reductase; Q03B84, NESG, LCR19, structural genomics, PSI-2, protein structure initiative; HET: NDP; 1.78A {Lactobacillus casei atcc 334} | Back alignment and structure |
|---|
Probab=99.07 E-value=8.2e-11 Score=101.53 Aligned_cols=157 Identities=15% Similarity=0.142 Sum_probs=98.0
Q ss_pred cEEEEEcCCChhHHHHHHHHHhcccCCCCCCeEEEEEecccchhhhhhhHhhhhhhcc-CCccceEEeCCHHHHhCCCcE
Q 019990 6 LRVLVTGAAGQIGYALVPMIARGIMLGPDQPVILHMLDIEPAAEALNGVKMELIDAAF-PLLKGVVATTDVVEACKDVNI 84 (332)
Q Consensus 6 ~kI~VtGaaG~IGs~l~~~L~~~~~~~~~~~~~i~l~D~~~~~~~~~~~~~dl~~~~~-~~~~~v~~~~~~~~a~~~aDi 84 (332)
|||+||||+|+||++++..|++.|. +|++++++.. .+. .+..... ....|+....+ +++.++|+
T Consensus 1 MkilVtGatG~iG~~l~~~L~~~g~-------~V~~~~R~~~--~~~----~~~~~~~~~~~~D~~d~~~--~~~~~~d~ 65 (224)
T 3h2s_A 1 MKIAVLGATGRAGSAIVAEARRRGH-------EVLAVVRDPQ--KAA----DRLGATVATLVKEPLVLTE--ADLDSVDA 65 (224)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTC-------EEEEEESCHH--HHH----HHTCTTSEEEECCGGGCCH--HHHTTCSE
T ss_pred CEEEEEcCCCHHHHHHHHHHHHCCC-------EEEEEEeccc--ccc----cccCCCceEEecccccccH--hhcccCCE
Confidence 4799999999999999999999885 8999998532 221 1111111 11234433333 67899999
Q ss_pred EEEecCCCCCCCCChhHHHhhhHHHHHHHHHHHHhhcCCCcEEEEEeCChhhHHH-----HHHHHCCCCC-CCcEEEeec
Q 019990 85 AVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEKHAAPNCKVLVVANPANTNAL-----ILKEFAPSIP-AKNITCLTR 158 (332)
Q Consensus 85 Vi~~ag~~~~~~~~~~~~~~~N~~~~~~i~~~i~~~~~~~~~viv~snp~~~~~~-----~~~~~~~~~~-~~~i~~~t~ 158 (332)
|||+||....+. ....|+..++++++++++.+ .++|++|+....... ..... ...+ +...|+.++
T Consensus 66 vi~~ag~~~~~~-----~~~~n~~~~~~l~~a~~~~~---~~~v~~SS~~~~~~~~~~~~~~~~~-~~~~~~~~~y~~sK 136 (224)
T 3h2s_A 66 VVDALSVPWGSG-----RGYLHLDFATHLVSLLRNSD---TLAVFILGSASLAMPGADHPMILDF-PESAASQPWYDGAL 136 (224)
T ss_dssp EEECCCCCTTSS-----CTHHHHHHHHHHHHTCTTCC---CEEEEECCGGGSBCTTCSSCGGGGC-CGGGGGSTTHHHHH
T ss_pred EEECCccCCCcc-----hhhHHHHHHHHHHHHHHHcC---CcEEEEecceeeccCCCCccccccC-CCCCccchhhHHHH
Confidence 999998752211 23568899999999998864 467777643211000 00000 1111 133566677
Q ss_pred ccHHHHHHHHHHHcCCCCCCeeeeEEEec
Q 019990 159 LDHNRAMGQISERLKVHVSDVKNVIIWGN 187 (332)
Q Consensus 159 l~~~r~~~~~a~~~~v~~~~v~~~~V~G~ 187 (332)
...+.+. .+.+..+++...+|+..++|+
T Consensus 137 ~~~e~~~-~~~~~~~i~~~ivrp~~v~g~ 164 (224)
T 3h2s_A 137 YQYYEYQ-FLQMNANVNWIGISPSEAFPS 164 (224)
T ss_dssp HHHHHHH-HHTTCTTSCEEEEEECSBCCC
T ss_pred HHHHHHH-HHHhcCCCcEEEEcCccccCC
Confidence 6666443 344567888888998888887
|
| >2q1w_A Putative nucleotide sugar epimerase/ dehydratase; rossman fold, protein-NAD complex, sugar binding protein; HET: NAD; 2.19A {Bordetella bronchiseptica} | Back alignment and structure |
|---|
Probab=99.06 E-value=1.4e-10 Score=106.60 Aligned_cols=163 Identities=11% Similarity=0.030 Sum_probs=98.7
Q ss_pred CCcEEEEEcCCChhHHHHHHHHHhcccCCCCCCeEEEEEecccchhhhhhhHhhhhhhccCCccceEEeCCHHHHhCC--
Q 019990 4 NPLRVLVTGAAGQIGYALVPMIARGIMLGPDQPVILHMLDIEPAAEALNGVKMELIDAAFPLLKGVVATTDVVEACKD-- 81 (332)
Q Consensus 4 ~~~kI~VtGaaG~IGs~l~~~L~~~~~~~~~~~~~i~l~D~~~~~~~~~~~~~dl~~~~~~~~~~v~~~~~~~~a~~~-- 81 (332)
++|+|+||||+||||++++..|++.|. +|++++++... ... ...++... .....|+....++.+++++
T Consensus 20 ~~~~vlVTGatG~iG~~l~~~L~~~g~-------~V~~~~r~~~~-~~~-~l~~~~~~-~~~~~Dl~d~~~~~~~~~~~~ 89 (333)
T 2q1w_A 20 HMKKVFITGICGQIGSHIAELLLERGD-------KVVGIDNFATG-RRE-HLKDHPNL-TFVEGSIADHALVNQLIGDLQ 89 (333)
T ss_dssp -CCEEEEETTTSHHHHHHHHHHHHTTC-------EEEEEECCSSC-CGG-GSCCCTTE-EEEECCTTCHHHHHHHHHHHC
T ss_pred CCCEEEEeCCccHHHHHHHHHHHHCCC-------EEEEEECCCcc-chh-hHhhcCCc-eEEEEeCCCHHHHHHHHhccC
Confidence 468999999999999999999998875 89999875321 110 00001010 0112344333445566777
Q ss_pred CcEEEEecCCCCCCCCChhHHHhhhHHHHHHHHHHHHhhcCCCcEEEEEeCChhhHH----H---HHHHHCCCCCCC-cE
Q 019990 82 VNIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEKHAAPNCKVLVVANPANTNA----L---ILKEFAPSIPAK-NI 153 (332)
Q Consensus 82 aDiVi~~ag~~~~~~~~~~~~~~~N~~~~~~i~~~i~~~~~~~~~viv~snp~~~~~----~---~~~~~~~~~~~~-~i 153 (332)
+|+|||+||..........+ ++.|+..+.++++++.+.+ . .++|++|+.. ... . .+.+ .. .|. ..
T Consensus 90 ~D~vih~A~~~~~~~~~~~~-~~~N~~~~~~l~~a~~~~~-~-~~iV~~SS~~-~~g~~~~~~~~~~~E--~~-~p~~~~ 162 (333)
T 2q1w_A 90 PDAVVHTAASYKDPDDWYND-TLTNCVGGSNVVQAAKKNN-V-GRFVYFQTAL-CYGVKPIQQPVRLDH--PR-NPANSS 162 (333)
T ss_dssp CSEEEECCCCCSCTTCHHHH-HHHHTHHHHHHHHHHHHTT-C-SEEEEEEEGG-GGCSCCCSSSBCTTS--CC-CCTTCH
T ss_pred CcEEEECceecCCCccCChH-HHHHHHHHHHHHHHHHHhC-C-CEEEEECcHH-HhCCCcccCCCCcCC--CC-CCCCCc
Confidence 99999999875432111222 7889999999999998864 2 3667766531 100 0 0000 00 233 45
Q ss_pred EEeecccHHHHHHH-HHHHcCCCCCCeeeeEEEecC
Q 019990 154 TCLTRLDHNRAMGQ-ISERLKVHVSDVKNVIIWGNH 188 (332)
Q Consensus 154 ~~~t~l~~~r~~~~-~a~~~~v~~~~v~~~~V~G~h 188 (332)
|+.++...+++... ++ +...+|..++||+.
T Consensus 163 Y~~sK~~~E~~~~~s~~-----~~~ilR~~~v~gp~ 193 (333)
T 2q1w_A 163 YAISKSANEDYLEYSGL-----DFVTFRLANVVGPR 193 (333)
T ss_dssp HHHHHHHHHHHHHHHTC-----CEEEEEESEEESTT
T ss_pred hHHHHHHHHHHHHhhhC-----CeEEEeeceEECcC
Confidence 66677766665544 32 56678887889975
|
| >3gpi_A NAD-dependent epimerase/dehydratase; structural genomics, unknown function, PSI-2, protein structure initiative; 1.44A {Methylobacillus flagellatus KT} | Back alignment and structure |
|---|
Probab=99.05 E-value=3.1e-11 Score=108.39 Aligned_cols=160 Identities=15% Similarity=0.095 Sum_probs=98.9
Q ss_pred CcEEEEEcCCChhHHHHHHHHHhcccCCCCCCeEEEEEecccchhhhhhhHhhhhhhccCCccceEEeCCHHHHhCC-Cc
Q 019990 5 PLRVLVTGAAGQIGYALVPMIARGIMLGPDQPVILHMLDIEPAAEALNGVKMELIDAAFPLLKGVVATTDVVEACKD-VN 83 (332)
Q Consensus 5 ~~kI~VtGaaG~IGs~l~~~L~~~~~~~~~~~~~i~l~D~~~~~~~~~~~~~dl~~~~~~~~~~v~~~~~~~~a~~~-aD 83 (332)
+|||+||| +||||++++..|++.|. +|+.++++.. .+. ........|+....++.+++++ +|
T Consensus 3 ~~~ilVtG-aG~iG~~l~~~L~~~g~-------~V~~~~r~~~--~~~-------~~~~~~~~Dl~d~~~~~~~~~~~~d 65 (286)
T 3gpi_A 3 LSKILIAG-CGDLGLELARRLTAQGH-------EVTGLRRSAQ--PMP-------AGVQTLIADVTRPDTLASIVHLRPE 65 (286)
T ss_dssp CCCEEEEC-CSHHHHHHHHHHHHTTC-------CEEEEECTTS--CCC-------TTCCEEECCTTCGGGCTTGGGGCCS
T ss_pred CCcEEEEC-CCHHHHHHHHHHHHCCC-------EEEEEeCCcc--ccc-------cCCceEEccCCChHHHHHhhcCCCC
Confidence 57899999 59999999999999875 7888987542 111 0000112344434445566776 99
Q ss_pred EEEEecCCCCCCCCChhHHHhhhHHHHHHHHHHHHhhcCCCcEEEEEeCChhhHH----HHHHHHCCCCCCCcEEEeecc
Q 019990 84 IAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEKHAAPNCKVLVVANPANTNA----LILKEFAPSIPAKNITCLTRL 159 (332)
Q Consensus 84 iVi~~ag~~~~~~~~~~~~~~~N~~~~~~i~~~i~~~~~~~~~viv~snp~~~~~----~~~~~~~~~~~~~~i~~~t~l 159 (332)
+|||+|+... .+....+..|+..+.++++++++.+ . .++|++|+.. +.. ..+.+. ....|...|+.++.
T Consensus 66 ~vih~a~~~~---~~~~~~~~~n~~~~~~ll~a~~~~~-~-~~~v~~SS~~-vyg~~~~~~~~E~-~~~~p~~~Y~~sK~ 138 (286)
T 3gpi_A 66 ILVYCVAASE---YSDEHYRLSYVEGLRNTLSALEGAP-L-QHVFFVSSTG-VYGQEVEEWLDED-TPPIAKDFSGKRML 138 (286)
T ss_dssp EEEECHHHHH---HC-----CCSHHHHHHHHHHTTTSC-C-CEEEEEEEGG-GCCCCCSSEECTT-SCCCCCSHHHHHHH
T ss_pred EEEEeCCCCC---CCHHHHHHHHHHHHHHHHHHHhhCC-C-CEEEEEcccE-EEcCCCCCCCCCC-CCCCCCChhhHHHH
Confidence 9999997632 1223467789999999999998754 2 3666666421 100 000110 22334446777777
Q ss_pred cHHHHHHHHHHHcCCCCCCeeeeEEEecCCCceee
Q 019990 160 DHNRAMGQISERLKVHVSDVKNVIIWGNHSSTQYP 194 (332)
Q Consensus 160 ~~~r~~~~~a~~~~v~~~~v~~~~V~G~hg~~~v~ 194 (332)
..+++ .. + ++...+|...|||+.....+.
T Consensus 139 ~~E~~-~~----~-~~~~ilR~~~v~G~~~~~~~~ 167 (286)
T 3gpi_A 139 EAEAL-LA----A-YSSTILRFSGIYGPGRLRMIR 167 (286)
T ss_dssp HHHHH-GG----G-SSEEEEEECEEEBTTBCHHHH
T ss_pred HHHHH-Hh----c-CCeEEEecccccCCCchhHHH
Confidence 77666 32 2 778889999999986543333
|
| >2a35_A Hypothetical protein PA4017; alpha-beta-alpha sandwich, structura genomics, PSI, protein structure initiative; 1.50A {Pseudomonas aeruginosa} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=99.05 E-value=7.8e-11 Score=100.95 Aligned_cols=157 Identities=15% Similarity=0.104 Sum_probs=97.4
Q ss_pred CCCCCcEEEEEcCCChhHHHHHHHHHhcccCCCCCCeEEEEEecccchhhhhhhHhhhhhhccCCccceEEeCCHHHHhC
Q 019990 1 MAKNPLRVLVTGAAGQIGYALVPMIARGIMLGPDQPVILHMLDIEPAAEALNGVKMELIDAAFPLLKGVVATTDVVEACK 80 (332)
Q Consensus 1 m~~~~~kI~VtGaaG~IGs~l~~~L~~~~~~~~~~~~~i~l~D~~~~~~~~~~~~~dl~~~~~~~~~~v~~~~~~~~a~~ 80 (332)
|+.++|+|+||||+|+||++++..|++.+.. .+|++++++... . .... .....|+....++.+++
T Consensus 1 M~~~~~~vlVtGatG~iG~~l~~~l~~~g~~-----~~V~~~~r~~~~---~-----~~~~-~~~~~D~~~~~~~~~~~- 65 (215)
T 2a35_A 1 MHSTPKRVLLAGATGLTGEHLLDRILSEPTL-----AKVIAPARKALA---E-----HPRL-DNPVGPLAELLPQLDGS- 65 (215)
T ss_dssp ---CCCEEEEECTTSHHHHHHHHHHHHCTTC-----CEEECCBSSCCC---C-----CTTE-ECCBSCHHHHGGGCCSC-
T ss_pred CCCCCceEEEECCCcHHHHHHHHHHHhCCCC-----CeEEEEeCCCcc---c-----CCCc-eEEeccccCHHHHHHhh-
Confidence 6555679999999999999999999987742 178888875421 0 0000 01122333333343444
Q ss_pred CCcEEEEecCCCCCCCCChhHHHhhhHHHHHHHHHHHHhhcCCCcEEEEEeCChhhHHHHHHHHCCCCCCCcEEEeeccc
Q 019990 81 DVNIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEKHAAPNCKVLVVANPANTNALILKEFAPSIPAKNITCLTRLD 160 (332)
Q Consensus 81 ~aDiVi~~ag~~~~~~~~~~~~~~~N~~~~~~i~~~i~~~~~~~~~viv~snp~~~~~~~~~~~~~~~~~~~i~~~t~l~ 160 (332)
+|+|||+||.......+..++++.|+....++++++.+.+ . .+++++|+.... -++...|+.++..
T Consensus 66 -~d~vi~~a~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~-~-~~~v~~Ss~~~~-----------~~~~~~y~~sK~~ 131 (215)
T 2a35_A 66 -IDTAFCCLGTTIKEAGSEEAFRAVDFDLPLAVGKRALEMG-A-RHYLVVSALGAD-----------AKSSIFYNRVKGE 131 (215)
T ss_dssp -CSEEEECCCCCHHHHSSHHHHHHHHTHHHHHHHHHHHHTT-C-CEEEEECCTTCC-----------TTCSSHHHHHHHH
T ss_pred -hcEEEECeeeccccCCCHHHHHHhhHHHHHHHHHHHHHcC-C-CEEEEECCcccC-----------CCCccHHHHHHHH
Confidence 8999999987532223445677889999999999998864 2 356766653110 0122244555554
Q ss_pred HHHHHHHHHHHcCCC-CCCeeeeEEEecCCC
Q 019990 161 HNRAMGQISERLKVH-VSDVKNVIIWGNHSS 190 (332)
Q Consensus 161 ~~r~~~~~a~~~~v~-~~~v~~~~V~G~hg~ 190 (332)
.+++ .+.++++ ...+|+..++|+...
T Consensus 132 ~e~~----~~~~~~~~~~~vrp~~v~g~~~~ 158 (215)
T 2a35_A 132 LEQA----LQEQGWPQLTIARPSLLFGPREE 158 (215)
T ss_dssp HHHH----HTTSCCSEEEEEECCSEESTTSC
T ss_pred HHHH----HHHcCCCeEEEEeCceeeCCCCc
Confidence 4443 3446888 888888888887543
|
| >1xq6_A Unknown protein; structural genomics, protein structure initiative, CESG, AT5G02240, NADP, center for eukaryotic structural genomics; HET: NAP; 1.80A {Arabidopsis thaliana} SCOP: c.2.1.2 PDB: 1ybm_A* 2q46_A* 2q4b_A* | Back alignment and structure |
|---|
Probab=99.04 E-value=5.7e-10 Score=97.71 Aligned_cols=159 Identities=14% Similarity=0.072 Sum_probs=98.4
Q ss_pred CCCcEEEEEcCCChhHHHHHHHHHhc--ccCCCCCCeEEEEEecccchhhhhhhHhhhhhhccCCccceEEeCCHHHHhC
Q 019990 3 KNPLRVLVTGAAGQIGYALVPMIARG--IMLGPDQPVILHMLDIEPAAEALNGVKMELIDAAFPLLKGVVATTDVVEACK 80 (332)
Q Consensus 3 ~~~~kI~VtGaaG~IGs~l~~~L~~~--~~~~~~~~~~i~l~D~~~~~~~~~~~~~dl~~~~~~~~~~v~~~~~~~~a~~ 80 (332)
.++++|+||||+|+||++++..|++. +. +|++++++.. .+. ++.........|+....++.++++
T Consensus 2 ~~~~~ilVtGasG~iG~~l~~~l~~~~~g~-------~V~~~~r~~~--~~~----~~~~~~~~~~~D~~d~~~~~~~~~ 68 (253)
T 1xq6_A 2 ANLPTVLVTGASGRTGQIVYKKLKEGSDKF-------VAKGLVRSAQ--GKE----KIGGEADVFIGDITDADSINPAFQ 68 (253)
T ss_dssp CSCCEEEEESTTSHHHHHHHHHHHHTTTTC-------EEEEEESCHH--HHH----HTTCCTTEEECCTTSHHHHHHHHT
T ss_pred CCCCEEEEEcCCcHHHHHHHHHHHhcCCCc-------EEEEEEcCCC--chh----hcCCCeeEEEecCCCHHHHHHHHc
Confidence 35689999999999999999999987 54 8999987531 221 111100011234444455677789
Q ss_pred CCcEEEEecCCCCCCC---------CCh------hHHHhhhHHHHHHHHHHHHhhcCCCcEEEEEeCChhhHHHHHHHHC
Q 019990 81 DVNIAVMVGGFPRKEG---------MER------KDVMSKNVSIYKAQASALEKHAAPNCKVLVVANPANTNALILKEFA 145 (332)
Q Consensus 81 ~aDiVi~~ag~~~~~~---------~~~------~~~~~~N~~~~~~i~~~i~~~~~~~~~viv~snp~~~~~~~~~~~~ 145 (332)
++|+|||+||...... .+. ...+..|+.....+++++++.+ . .++|++|+....
T Consensus 69 ~~d~vi~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~-~-~~iv~~SS~~~~--------- 137 (253)
T 1xq6_A 69 GIDALVILTSAVPKMKPGFDPTKGGRPEFIFEDGQYPEQVDWIGQKNQIDAAKVAG-V-KHIVVVGSMGGT--------- 137 (253)
T ss_dssp TCSEEEECCCCCCEECTTCCTTSSCCCCEECCTTCSHHHHTTHHHHHHHHHHHHHT-C-SEEEEEEETTTT---------
T ss_pred CCCEEEEeccccccccccccccccccchhhccccccceeeeHHHHHHHHHHHHHcC-C-CEEEEEcCccCC---------
Confidence 9999999998642100 011 1246789999999999998875 2 366666643210
Q ss_pred CCCCCCcEE-----EeecccHHHHHHHHHHHcCCCCCCeeeeEEEecCC
Q 019990 146 PSIPAKNIT-----CLTRLDHNRAMGQISERLKVHVSDVKNVIIWGNHS 189 (332)
Q Consensus 146 ~~~~~~~i~-----~~t~l~~~r~~~~~a~~~~v~~~~v~~~~V~G~hg 189 (332)
...++...+ +.++...++ +.+..|++...+|+..++|+.+
T Consensus 138 ~~~~~~~~~~~~~y~~sK~~~e~----~~~~~~i~~~~vrpg~v~~~~~ 182 (253)
T 1xq6_A 138 NPDHPLNKLGNGNILVWKRKAEQ----YLADSGTPYTIIRAGGLLDKEG 182 (253)
T ss_dssp CTTCGGGGGGGCCHHHHHHHHHH----HHHTSSSCEEEEEECEEECSCS
T ss_pred CCCCccccccchhHHHHHHHHHH----HHHhCCCceEEEecceeecCCc
Confidence 011111111 223443333 3345788888899888888753
|
| >2dkn_A 3-alpha-hydroxysteroid dehydrogenase; oxidoreductase, rossmann fold; HET: NAI; 1.80A {Pseudomonas SP} | Back alignment and structure |
|---|
Probab=99.02 E-value=4.8e-10 Score=98.50 Aligned_cols=154 Identities=16% Similarity=0.042 Sum_probs=92.7
Q ss_pred CcEEEEEcCCChhHHHHHHHHHhcccCCCCCCeEEEEEecccchhhhhh-hHhhhhhhccCCccceEEeCCHHHHhC---
Q 019990 5 PLRVLVTGAAGQIGYALVPMIARGIMLGPDQPVILHMLDIEPAAEALNG-VKMELIDAAFPLLKGVVATTDVVEACK--- 80 (332)
Q Consensus 5 ~~kI~VtGaaG~IGs~l~~~L~~~~~~~~~~~~~i~l~D~~~~~~~~~~-~~~dl~~~~~~~~~~v~~~~~~~~a~~--- 80 (332)
|++|+||||+|+||++++..|++.|. +|+++|++.. .+.. ...|+ ....++.++++
T Consensus 1 Mk~vlVtGasg~iG~~l~~~L~~~g~-------~V~~~~r~~~--~~~~~~~~D~-----------~~~~~~~~~~~~~~ 60 (255)
T 2dkn_A 1 MSVIAITGSASGIGAALKELLARAGH-------TVIGIDRGQA--DIEADLSTPG-----------GRETAVAAVLDRCG 60 (255)
T ss_dssp -CEEEEETTTSHHHHHHHHHHHHTTC-------EEEEEESSSS--SEECCTTSHH-----------HHHHHHHHHHHHHT
T ss_pred CcEEEEeCCCcHHHHHHHHHHHhCCC-------EEEEEeCChh--HccccccCCc-----------ccHHHHHHHHHHcC
Confidence 35899999999999999999998875 8999998642 1110 11222 22223334443
Q ss_pred -CCcEEEEecCCCCCCCCChhHHHhhhHHHHHHHHHHHHhhc--CCCcEEEEEeCChhhHHH------------------
Q 019990 81 -DVNIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEKHA--APNCKVLVVANPANTNAL------------------ 139 (332)
Q Consensus 81 -~aDiVi~~ag~~~~~~~~~~~~~~~N~~~~~~i~~~i~~~~--~~~~~viv~snp~~~~~~------------------ 139 (332)
++|+|||+||..... .+....+..|+.....+++++.+.. ....++|++|+.......
T Consensus 61 ~~~d~vi~~Ag~~~~~-~~~~~~~~~N~~~~~~l~~~~~~~~~~~~~~~iv~~sS~~~~~~~~~~~~~~~~~~~~~~~~~ 139 (255)
T 2dkn_A 61 GVLDGLVCCAGVGVTA-ANSGLVVAVNYFGVSALLDGLAEALSRGQQPAAVIVGSIAATQPGAAELPMVEAMLAGDEARA 139 (255)
T ss_dssp TCCSEEEECCCCCTTS-SCHHHHHHHHTHHHHHHHHHHHHHHHTSSSCEEEEECCGGGGSTTGGGCHHHHHHHHTCHHHH
T ss_pred CCccEEEECCCCCCcc-hhHHHHHHHHhHHHHHHHHHHHHHhhhcCCceEEEEeccccccccccccchhhhhcccchhhh
Confidence 899999999975422 2345678889888888888776651 123567777753211000
Q ss_pred HHHHHCCCCCCCcEEEeecccHHHHHHHHHHHc---CCCCCCee
Q 019990 140 ILKEFAPSIPAKNITCLTRLDHNRAMGQISERL---KVHVSDVK 180 (332)
Q Consensus 140 ~~~~~~~~~~~~~i~~~t~l~~~r~~~~~a~~~---~v~~~~v~ 180 (332)
..... ...++...|+.+|...+.+...+++.+ |+....++
T Consensus 140 ~~~~~-~~~~~~~~Y~~sK~a~~~~~~~~~~~~~~~gi~v~~v~ 182 (255)
T 2dkn_A 140 IELAE-QQGQTHLAYAGSKYAVTCLARRNVVDWAGRGVRLNVVA 182 (255)
T ss_dssp HHHHH-HHCCHHHHHHHHHHHHHHHHHHTHHHHHHTTCEEEEEE
T ss_pred hhhcc-ccCCcchhHHHHHHHHHHHHHHHHHHHhhcCcEEEEEc
Confidence 00000 001222357788888888877777763 54443333
|
| >3oh8_A Nucleoside-diphosphate sugar epimerase (SULA FAMI; DUF1731_C, northeast structural genomics consortium, NESG, C PSI-biology; 2.00A {Corynebacterium glutamicum} | Back alignment and structure |
|---|
Probab=99.01 E-value=5.6e-10 Score=108.89 Aligned_cols=158 Identities=15% Similarity=0.126 Sum_probs=96.2
Q ss_pred CcEEEEEcCCChhHHHHHHHHHhcccCCCCCCeEEEEEecccchhhhhhhHhhhhhhccCCccceEEeCCHHHHhCCCcE
Q 019990 5 PLRVLVTGAAGQIGYALVPMIARGIMLGPDQPVILHMLDIEPAAEALNGVKMELIDAAFPLLKGVVATTDVVEACKDVNI 84 (332)
Q Consensus 5 ~~kI~VtGaaG~IGs~l~~~L~~~~~~~~~~~~~i~l~D~~~~~~~~~~~~~dl~~~~~~~~~~v~~~~~~~~a~~~aDi 84 (332)
+|||+||||+||||++++..|++.|+ +|+.++++... ...... ++. ....+++.++|+
T Consensus 147 ~m~VLVTGatG~IG~~l~~~L~~~G~-------~V~~l~R~~~~--~~~v~~-----------d~~--~~~~~~l~~~D~ 204 (516)
T 3oh8_A 147 PLTVAITGSRGLVGRALTAQLQTGGH-------EVIQLVRKEPK--PGKRFW-----------DPL--NPASDLLDGADV 204 (516)
T ss_dssp CCEEEEESTTSHHHHHHHHHHHHTTC-------EEEEEESSSCC--TTCEEC-----------CTT--SCCTTTTTTCSE
T ss_pred CCEEEEECCCCHHHHHHHHHHHHCCC-------EEEEEECCCCC--ccceee-----------ccc--chhHHhcCCCCE
Confidence 78999999999999999999999886 89999986421 111111 111 123456789999
Q ss_pred EEEecCCCCC---CCCChhHHHhhhHHHHHHHHHHHHhhcCCCcEEEEEeCChhhHH-----HHHHHHCCCCCCCcEEEe
Q 019990 85 AVMVGGFPRK---EGMERKDVMSKNVSIYKAQASALEKHAAPNCKVLVVANPANTNA-----LILKEFAPSIPAKNITCL 156 (332)
Q Consensus 85 Vi~~ag~~~~---~~~~~~~~~~~N~~~~~~i~~~i~~~~~~~~~viv~snp~~~~~-----~~~~~~~~~~~~~~i~~~ 156 (332)
|||+|+.... ......+++..|+..+.++++++.+.... .++|++|+. .+.. ..+.+. +.. +...++.
T Consensus 205 Vih~A~~~~~~~~~~~~~~~~~~~Nv~gt~~ll~a~a~~~~~-~r~V~~SS~-~vyg~~~~~~~~~E~-~~~-~~~~y~~ 280 (516)
T 3oh8_A 205 LVHLAGEPIFGRFNDSHKEAIRESRVLPTKFLAELVAESTQC-TTMISASAV-GFYGHDRGDEILTEE-SES-GDDFLAE 280 (516)
T ss_dssp EEECCCC-----CCGGGHHHHHHHTHHHHHHHHHHHHHCSSC-CEEEEEEEG-GGGCSEEEEEEECTT-SCC-CSSHHHH
T ss_pred EEECCCCccccccchhHHHHHHHHHHHHHHHHHHHHHhcCCC-CEEEEeCcc-eEecCCCCCCccCCC-CCC-CcChHHH
Confidence 9999987421 11233457788999999999985544312 356666642 1100 000010 111 2222333
Q ss_pred ecccHHHHHHHHHHHcCCCCCCeeeeEEEecCC
Q 019990 157 TRLDHNRAMGQISERLKVHVSDVKNVIIWGNHS 189 (332)
Q Consensus 157 t~l~~~r~~~~~a~~~~v~~~~v~~~~V~G~hg 189 (332)
++...+.+.. .++..|++...+|...|||+.+
T Consensus 281 ~~~~~E~~~~-~~~~~gi~~~ilRp~~v~Gp~~ 312 (516)
T 3oh8_A 281 VCRDWEHATA-PASDAGKRVAFIRTGVALSGRG 312 (516)
T ss_dssp HHHHHHHTTH-HHHHTTCEEEEEEECEEEBTTB
T ss_pred HHHHHHHHHH-HHHhCCCCEEEEEeeEEECCCC
Confidence 3333333332 3456799999999999999754
|
| >2v6g_A Progesterone 5-beta-reductase; tyrosine-dependent oxidoreductase, oxidoreductase, SDR, cardenolides, cardiac glycosides; HET: NAP; 2.3A {Digitalis lanata} PDB: 2v6f_A* | Back alignment and structure |
|---|
Probab=99.01 E-value=1.5e-10 Score=107.22 Aligned_cols=167 Identities=16% Similarity=0.125 Sum_probs=99.3
Q ss_pred cEEEEEcCCChhHHHHHHHHHhcccCCCCCCeEEEEEecccchhhhhhhHhhhhhhcc-CCccceEEeCCHHHHhCC---
Q 019990 6 LRVLVTGAAGQIGYALVPMIARGIMLGPDQPVILHMLDIEPAAEALNGVKMELIDAAF-PLLKGVVATTDVVEACKD--- 81 (332)
Q Consensus 6 ~kI~VtGaaG~IGs~l~~~L~~~~~~~~~~~~~i~l~D~~~~~~~~~~~~~dl~~~~~-~~~~~v~~~~~~~~a~~~--- 81 (332)
|||+||||+||||++++..|++.+.. ....+|+.++++... .. +..... ....|+....++.+++++
T Consensus 2 ~~vlVtGatG~iG~~l~~~L~~~g~~--~~~~~V~~~~r~~~~--~~-----~~~~~~~~~~~Dl~d~~~~~~~~~~~~~ 72 (364)
T 2v6g_A 2 SVALIVGVTGIIGNSLAEILPLADTP--GGPWKVYGVARRTRP--AW-----HEDNPINYVQCDISDPDDSQAKLSPLTD 72 (364)
T ss_dssp EEEEEETTTSHHHHHHHHHTTSTTCT--TCSEEEEEEESSCCC--SC-----CCSSCCEEEECCTTSHHHHHHHHTTCTT
T ss_pred CEEEEECCCcHHHHHHHHHHHhCCCC--CCceEEEEEeCCCCc--cc-----cccCceEEEEeecCCHHHHHHHHhcCCC
Confidence 68999999999999999999887600 000289999986421 11 111000 011334333445667787
Q ss_pred CcEEEEecCCCCCCCCChhHHHhhhHHHHHHHHHHHHhhcCCCc-EEEEEe------CChhhHHH------HHHHHCCCC
Q 019990 82 VNIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEKHAAPNC-KVLVVA------NPANTNAL------ILKEFAPSI 148 (332)
Q Consensus 82 aDiVi~~ag~~~~~~~~~~~~~~~N~~~~~~i~~~i~~~~~~~~-~viv~s------np~~~~~~------~~~~~~~~~ 148 (332)
+|+|||+|+... .+..+.++.|+..+.++++++++.+ ++. +++..+ ++..+... .+.+..+..
T Consensus 73 ~d~vih~a~~~~---~~~~~~~~~n~~~~~~l~~a~~~~~-~~~~~~v~~~g~~i~~Ss~~vyg~~~~~~~~~~E~~~~~ 148 (364)
T 2v6g_A 73 VTHVFYVTWANR---STEQENCEANSKMFRNVLDAVIPNC-PNLKHISLQTGRKHYMGPFESYGKIESHDPPYTEDLPRL 148 (364)
T ss_dssp CCEEEECCCCCC---SSHHHHHHHHHHHHHHHHHHHTTTC-TTCCEEEEECCTHHHHCCGGGTTTSCCCCSSBCTTSCCC
T ss_pred CCEEEECCCCCc---chHHHHHHHhHHHHHHHHHHHHHhc-cccceEEeccCceEEEechhhccccccCCCCCCccccCC
Confidence 999999998753 2345678899999999999999873 233 444211 11111000 000000001
Q ss_pred CCCcEEEeecccHHHHHHHHHHHcC-CCCCCeeeeEEEecCC
Q 019990 149 PAKNITCLTRLDHNRAMGQISERLK-VHVSDVKNVIIWGNHS 189 (332)
Q Consensus 149 ~~~~i~~~t~l~~~r~~~~~a~~~~-v~~~~v~~~~V~G~hg 189 (332)
++...| ...+++...+++..+ ++...+|...|||+..
T Consensus 149 ~~~~~y----~~~E~~~~~~~~~~~~~~~~ilRp~~v~G~~~ 186 (364)
T 2v6g_A 149 KYMNFY----YDLEDIMLEEVEKKEGLTWSVHRPGNIFGFSP 186 (364)
T ss_dssp SSCCHH----HHHHHHHHHHHTTSTTCEEEEEEESSEECCCT
T ss_pred ccchhh----HHHHHHHHHHhhcCCCceEEEECCCceeCCCC
Confidence 111122 335666666666676 8999999999999754
|
| >4b4o_A Epimerase family protein SDR39U1; isomerase; HET: NDP PE4; 2.70A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.00 E-value=2.2e-09 Score=96.89 Aligned_cols=101 Identities=21% Similarity=0.244 Sum_probs=68.8
Q ss_pred cEEEEEcCCChhHHHHHHHHHhcccCCCCCCeEEEEEecccchhhhhhhHhhhhhhccCCccceEEeCCHHHHhCCCcEE
Q 019990 6 LRVLVTGAAGQIGYALVPMIARGIMLGPDQPVILHMLDIEPAAEALNGVKMELIDAAFPLLKGVVATTDVVEACKDVNIA 85 (332)
Q Consensus 6 ~kI~VtGaaG~IGs~l~~~L~~~~~~~~~~~~~i~l~D~~~~~~~~~~~~~dl~~~~~~~~~~v~~~~~~~~a~~~aDiV 85 (332)
|||+||||+||||++|+..|++.|+ +|+.+.+++.... +.......+++.++|.|
T Consensus 1 MkILVTGatGfIG~~L~~~L~~~G~-------~V~~l~R~~~~~~------------------~~~~~~~~~~l~~~d~v 55 (298)
T 4b4o_A 1 MRVLVGGGTGFIGTALTQLLNARGH-------EVTLVSRKPGPGR------------------ITWDELAASGLPSCDAA 55 (298)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTC-------EEEEEESSCCTTE------------------EEHHHHHHHCCCSCSEE
T ss_pred CEEEEECCCCHHHHHHHHHHHHCCC-------EEEEEECCCCcCe------------------eecchhhHhhccCCCEE
Confidence 6899999999999999999999886 8888877532110 11111123557899999
Q ss_pred EEecCCCCC-----CC-CChhHHHhhhHHHHHHHHHHHHhhcCCCcEEEEEe
Q 019990 86 VMVGGFPRK-----EG-MERKDVMSKNVSIYKAQASALEKHAAPNCKVLVVA 131 (332)
Q Consensus 86 i~~ag~~~~-----~~-~~~~~~~~~N~~~~~~i~~~i~~~~~~~~~viv~s 131 (332)
||+|+..-. +. ....++...|+..++.+++.++....+..+++.+|
T Consensus 56 ihla~~~i~~~~~~~~~~~~~~~~~~~v~~t~~l~~~~~~~~~~~~~~i~~S 107 (298)
T 4b4o_A 56 VNLAGENILNPLRRWNETFQKEVLGSRLETTQLLAKAITKAPQPPKAWVLVT 107 (298)
T ss_dssp EECCCCCSSCTTSCCCHHHHHHHHHHHHHHHHHHHHHHHHCSSCCSEEEEEE
T ss_pred EEeccCcccchhhhhhhhhhhhhhhHHHHHHHHHHHHHHHhCCCceEEEEEe
Confidence 999975311 11 11235677899999999999988753333344444
|
| >2wsb_A Galactitol dehydrogenase; oxidoreductase, SDR, rossmann fold, tagatose; HET: NAD; 1.25A {Rhodobacter sphaeroides} PDB: 2wdz_A* 3lqf_A* | Back alignment and structure |
|---|
Probab=99.00 E-value=7e-10 Score=97.66 Aligned_cols=149 Identities=19% Similarity=0.182 Sum_probs=88.6
Q ss_pred CCcEEEEEcCCChhHHHHHHHHHhcccCCCCCCeEEEEEecccchhhhhhhHhhhhhhc-cCCccceEEeCCHHHHh---
Q 019990 4 NPLRVLVTGAAGQIGYALVPMIARGIMLGPDQPVILHMLDIEPAAEALNGVKMELIDAA-FPLLKGVVATTDVVEAC--- 79 (332)
Q Consensus 4 ~~~kI~VtGaaG~IGs~l~~~L~~~~~~~~~~~~~i~l~D~~~~~~~~~~~~~dl~~~~-~~~~~~v~~~~~~~~a~--- 79 (332)
+.++|+||||+|+||++++..|++.|. +|+++|++. +.+.....++.... .....|+....++.+++
T Consensus 10 ~~k~vlITGasggiG~~la~~l~~~G~-------~V~~~~r~~--~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~ 80 (254)
T 2wsb_A 10 DGACAAVTGAGSGIGLEICRAFAASGA-------RLILIDREA--AALDRAAQELGAAVAARIVADVTDAEAMTAAAAEA 80 (254)
T ss_dssp TTCEEEEETTTSHHHHHHHHHHHHTTC-------EEEEEESCH--HHHHHHHHHHGGGEEEEEECCTTCHHHHHHHHHHH
T ss_pred CCCEEEEECCCcHHHHHHHHHHHHCCC-------EEEEEeCCH--HHHHHHHHHhcccceeEEEEecCCHHHHHHHHHHH
Confidence 346899999999999999999999885 899999863 22322222221110 11123333333333333
Q ss_pred ---CCCcEEEEecCCCCCC---CCCh---hHHHhhhHHHHH----HHHHHHHhhcCCCcEEEEEeCChhhHHHHHHHHCC
Q 019990 80 ---KDVNIAVMVGGFPRKE---GMER---KDVMSKNVSIYK----AQASALEKHAAPNCKVLVVANPANTNALILKEFAP 146 (332)
Q Consensus 80 ---~~aDiVi~~ag~~~~~---~~~~---~~~~~~N~~~~~----~i~~~i~~~~~~~~~viv~snp~~~~~~~~~~~~~ 146 (332)
.+.|+|||.||..... ..+. ...+..|+.... .+++.+++.. ..++|++|+.... .
T Consensus 81 ~~~~~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~--~~~iv~isS~~~~---------~ 149 (254)
T 2wsb_A 81 EAVAPVSILVNSAGIARLHDALETDDATWRQVMAVNVDGMFWASRAFGRAMVARG--AGAIVNLGSMSGT---------I 149 (254)
T ss_dssp HHHSCCCEEEECCCCCCCBCSTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHT--CEEEEEECCGGGT---------S
T ss_pred HhhCCCcEEEECCccCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcC--CcEEEEEecchhc---------c
Confidence 4789999999974321 1222 235667777644 4444444443 4577777764321 1
Q ss_pred CCCCC--cEEEeecccHHHHHHHHHHHc
Q 019990 147 SIPAK--NITCLTRLDHNRAMGQISERL 172 (332)
Q Consensus 147 ~~~~~--~i~~~t~l~~~r~~~~~a~~~ 172 (332)
+.+.. ..|+.+|.....+...+++.+
T Consensus 150 ~~~~~~~~~Y~~sK~a~~~~~~~~~~~~ 177 (254)
T 2wsb_A 150 VNRPQFASSYMASKGAVHQLTRALAAEW 177 (254)
T ss_dssp CCSSSCBHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCcchHHHHHHHHHHHHHHHHHHHH
Confidence 12222 457778887788887888776
|
| >3qiv_A Short-chain dehydrogenase or 3-oxoacyl-[acyl-CARR protein] reductase; structural genomics; 2.25A {Mycobacterium avium subsp} | Back alignment and structure |
|---|
Probab=98.99 E-value=1.8e-09 Score=95.19 Aligned_cols=156 Identities=19% Similarity=0.187 Sum_probs=93.8
Q ss_pred CCCCCcEEEEEcCCChhHHHHHHHHHhcccCCCCCCeEEEEEecccchhhhhhhHhhhhhhc---cCCccceEEeCCHHH
Q 019990 1 MAKNPLRVLVTGAAGQIGYALVPMIARGIMLGPDQPVILHMLDIEPAAEALNGVKMELIDAA---FPLLKGVVATTDVVE 77 (332)
Q Consensus 1 m~~~~~kI~VtGaaG~IGs~l~~~L~~~~~~~~~~~~~i~l~D~~~~~~~~~~~~~dl~~~~---~~~~~~v~~~~~~~~ 77 (332)
|..+.++|+||||+|+||++++..|++.|. +|+++|++. +.+.....++.... .....|++...++.+
T Consensus 5 ~~~~~k~vlITGas~giG~~~a~~l~~~G~-------~V~~~~r~~--~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~ 75 (253)
T 3qiv_A 5 MRFENKVGIVTGSGGGIGQAYAEALAREGA-------AVVVADINA--EAAEAVAKQIVADGGTAISVAVDVSDPESAKA 75 (253)
T ss_dssp CTTTTCEEEEETTTSHHHHHHHHHHHHTTC-------EEEEEESCH--HHHHHHHHHHHHTTCEEEEEECCTTSHHHHHH
T ss_pred cccCCCEEEEECCCChHHHHHHHHHHHCCC-------EEEEEcCCH--HHHHHHHHHHHhcCCcEEEEEccCCCHHHHHH
Confidence 445678899999999999999999999886 899999864 23333333332211 011234433333333
Q ss_pred HhC-------CCcEEEEecCCCC---C---CCCCh---hHHHhhhHHH----HHHHHHHHHhhcCCCcEEEEEeCChhhH
Q 019990 78 ACK-------DVNIAVMVGGFPR---K---EGMER---KDVMSKNVSI----YKAQASALEKHAAPNCKVLVVANPANTN 137 (332)
Q Consensus 78 a~~-------~aDiVi~~ag~~~---~---~~~~~---~~~~~~N~~~----~~~i~~~i~~~~~~~~~viv~snp~~~~ 137 (332)
.++ ..|++||.||... . ...+. ...++.|+.. ++.+++.+.+.. ..++|++|+...
T Consensus 76 ~~~~~~~~~g~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~--~g~iv~isS~~~-- 151 (253)
T 3qiv_A 76 MADRTLAEFGGIDYLVNNAAIFGGMKLDFLLTIDPEYYKKFMSVNLDGALWCTRAVYKKMTKRG--GGAIVNQSSTAA-- 151 (253)
T ss_dssp HHHHHHHHHSCCCEEEECCCCCCGGGGGCTTTSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT--CEEEEEECC-----
T ss_pred HHHHHHHHcCCCCEEEECCCcCCCCCCcccccCCHHHHHHHHhhhhHHHHHHHHHHHHHHHhcC--CCEEEEECCccc--
Confidence 333 7899999998731 1 11222 2356778777 555566666553 457777776321
Q ss_pred HHHHHHHCCCCCCCcEEEeecccHHHHHHHHHHHcCCCCCCeee
Q 019990 138 ALILKEFAPSIPAKNITCLTRLDHNRAMGQISERLKVHVSDVKN 181 (332)
Q Consensus 138 ~~~~~~~~~~~~~~~i~~~t~l~~~r~~~~~a~~~~v~~~~v~~ 181 (332)
+++...|+.+|.....+...+++.++ +..|+.
T Consensus 152 ----------~~~~~~Y~asK~a~~~~~~~la~e~~--~~gi~v 183 (253)
T 3qiv_A 152 ----------WLYSNYYGLAKVGINGLTQQLSRELG--GRNIRI 183 (253)
T ss_dssp ------------------CCHHHHHHHHHHHHHHTT--TTTEEE
T ss_pred ----------cCCCchhHHHHHHHHHHHHHHHHHHh--hcCeEE
Confidence 12233578899988899889998875 345664
|
| >4e6p_A Probable sorbitol dehydrogenase (L-iditol 2-dehyd; NAD(P)-binding, structural genomics, PSI-biology; HET: MSE; 2.10A {Sinorhizobium meliloti} PDB: 1k2w_A | Back alignment and structure |
|---|
Probab=98.98 E-value=4.5e-10 Score=99.60 Aligned_cols=157 Identities=18% Similarity=0.170 Sum_probs=96.7
Q ss_pred CCcEEEEEcCCChhHHHHHHHHHhcccCCCCCCeEEEEEecccchhhhhhhHhhhhhhccCCccceEEeCCHHHHhC---
Q 019990 4 NPLRVLVTGAAGQIGYALVPMIARGIMLGPDQPVILHMLDIEPAAEALNGVKMELIDAAFPLLKGVVATTDVVEACK--- 80 (332)
Q Consensus 4 ~~~kI~VtGaaG~IGs~l~~~L~~~~~~~~~~~~~i~l~D~~~~~~~~~~~~~dl~~~~~~~~~~v~~~~~~~~a~~--- 80 (332)
+.++++||||+|+||++++..|++.|. +|++.|++. +.+.....++.........|++...++.++++
T Consensus 7 ~~k~vlVTGas~gIG~~ia~~l~~~G~-------~V~~~~r~~--~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~ 77 (259)
T 4e6p_A 7 EGKSALITGSARGIGRAFAEAYVREGA-------TVAIADIDI--ERARQAAAEIGPAAYAVQMDVTRQDSIDAAIAATV 77 (259)
T ss_dssp TTCEEEEETCSSHHHHHHHHHHHHTTC-------EEEEEESCH--HHHHHHHHHHCTTEEEEECCTTCHHHHHHHHHHHH
T ss_pred CCCEEEEECCCcHHHHHHHHHHHHCCC-------EEEEEeCCH--HHHHHHHHHhCCCceEEEeeCCCHHHHHHHHHHHH
Confidence 357899999999999999999999886 899999853 23333333332111111234444334444443
Q ss_pred ----CCcEEEEecCCCCCC---CCCh---hHHHhhhHHHHHHHHHHHHhhc---CCCcEEEEEeCChhhHHHHHHHHCCC
Q 019990 81 ----DVNIAVMVGGFPRKE---GMER---KDVMSKNVSIYKAQASALEKHA---APNCKVLVVANPANTNALILKEFAPS 147 (332)
Q Consensus 81 ----~aDiVi~~ag~~~~~---~~~~---~~~~~~N~~~~~~i~~~i~~~~---~~~~~viv~snp~~~~~~~~~~~~~~ 147 (332)
+.|++||.||..... ..+. ...++.|+.....+.+++.... .+.+++|++|+.... .+
T Consensus 78 ~~~g~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~~g~iv~isS~~~~---------~~ 148 (259)
T 4e6p_A 78 EHAGGLDILVNNAALFDLAPIVEITRESYEKLFAINVAGTLFTLQAAARQMIAQGRGGKIINMASQAGR---------RG 148 (259)
T ss_dssp HHSSSCCEEEECCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTSCEEEEEECCGGGT---------SC
T ss_pred HHcCCCCEEEECCCcCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCeEEEEECChhhc---------cC
Confidence 799999999974321 1122 2345678777666666554331 124677777764321 22
Q ss_pred CCCCcEEEeecccHHHHHHHHHHHcCCCCCCee
Q 019990 148 IPAKNITCLTRLDHNRAMGQISERLKVHVSDVK 180 (332)
Q Consensus 148 ~~~~~i~~~t~l~~~r~~~~~a~~~~v~~~~v~ 180 (332)
.+....|+.+|.....+.+.++..++ +..|+
T Consensus 149 ~~~~~~Y~asK~a~~~~~~~la~e~~--~~gi~ 179 (259)
T 4e6p_A 149 EALVAIYCATKAAVISLTQSAGLDLI--KHRIN 179 (259)
T ss_dssp CTTBHHHHHHHHHHHHHHHHHHHHHG--GGTEE
T ss_pred CCCChHHHHHHHHHHHHHHHHHHHhh--hcCCE
Confidence 34444678888888888888888774 34455
|
| >1z7e_A Protein aRNA; rossmann fold, OB-like fold, hydrolase; HET: ATP UGA; 3.00A {Escherichia coli} SCOP: b.46.1.1 c.2.1.2 c.65.1.1 | Back alignment and structure |
|---|
Probab=98.98 E-value=2.5e-10 Score=114.65 Aligned_cols=170 Identities=14% Similarity=0.113 Sum_probs=110.1
Q ss_pred CCcEEEEEcCCChhHHHHHHHHHhc-ccCCCCCCeEEEEEecccchhhhhhhHhhhhhhcc-CCccceEEeCC-HHHHhC
Q 019990 4 NPLRVLVTGAAGQIGYALVPMIARG-IMLGPDQPVILHMLDIEPAAEALNGVKMELIDAAF-PLLKGVVATTD-VVEACK 80 (332)
Q Consensus 4 ~~~kI~VtGaaG~IGs~l~~~L~~~-~~~~~~~~~~i~l~D~~~~~~~~~~~~~dl~~~~~-~~~~~v~~~~~-~~~a~~ 80 (332)
++++|+||||+||||++++..|++. +. +|++++++.. ..... +..... ....|+....+ +.++++
T Consensus 314 ~~~~VLVTGatG~IG~~l~~~Ll~~~g~-------~V~~~~r~~~--~~~~~---~~~~~v~~v~~Dl~d~~~~~~~~~~ 381 (660)
T 1z7e_A 314 RRTRVLILGVNGFIGNHLTERLLREDHY-------EVYGLDIGSD--AISRF---LNHPHFHFVEGDISIHSEWIEYHVK 381 (660)
T ss_dssp CCEEEEEETTTSHHHHHHHHHHHHSSSE-------EEEEEESCCT--TTGGG---TTCTTEEEEECCTTTCHHHHHHHHH
T ss_pred cCceEEEEcCCcHHHHHHHHHHHhcCCC-------EEEEEEcCch--hhhhh---ccCCceEEEECCCCCcHHHHHHhhc
Confidence 4678999999999999999999986 65 8999997542 11110 000000 01123332222 445677
Q ss_pred CCcEEEEecCCCCCC--CCChhHHHhhhHHHHHHHHHHHHhhcCCCcEEEEEeCChhhHHH----HHHHHCC-----C-C
Q 019990 81 DVNIAVMVGGFPRKE--GMERKDVMSKNVSIYKAQASALEKHAAPNCKVLVVANPANTNAL----ILKEFAP-----S-I 148 (332)
Q Consensus 81 ~aDiVi~~ag~~~~~--~~~~~~~~~~N~~~~~~i~~~i~~~~~~~~~viv~snp~~~~~~----~~~~~~~-----~-~ 148 (332)
++|+|||+||..... ..+..+.+..|+..+.++++++.+.+ .++|++|+.. .... .+.+..+ . .
T Consensus 382 ~~D~Vih~Aa~~~~~~~~~~~~~~~~~Nv~gt~~ll~aa~~~~---~r~V~~SS~~-vyg~~~~~~~~E~~~~~~~~p~~ 457 (660)
T 1z7e_A 382 KCDVVLPLVAIATPIEYTRNPLRVFELDFEENLRIIRYCVKYR---KRIIFPSTSE-VYGMCSDKYFDEDHSNLIVGPVN 457 (660)
T ss_dssp HCSEEEECCCCCCTHHHHHSHHHHHHHHTHHHHHHHHHHHHTT---CEEEEECCGG-GGBTCCSSSBCTTTCCEEECCTT
T ss_pred CCCEEEECceecCccccccCHHHHHHhhhHHHHHHHHHHHHhC---CEEEEEecHH-HcCCCCCcccCCCccccccCccc
Confidence 999999999865321 12234567889999999999998864 4777777531 1100 0001000 0 0
Q ss_pred CCCcEEEeecccHHHHHHHHHHHcCCCCCCeeeeEEEecCC
Q 019990 149 PAKNITCLTRLDHNRAMGQISERLKVHVSDVKNVIIWGNHS 189 (332)
Q Consensus 149 ~~~~i~~~t~l~~~r~~~~~a~~~~v~~~~v~~~~V~G~hg 189 (332)
++...|+.+|...+++...+++..|++...+|..+|||+..
T Consensus 458 ~p~~~Y~~sK~~~E~~~~~~~~~~gi~~~ilRpg~v~Gp~~ 498 (660)
T 1z7e_A 458 KPRWIYSVSKQLLDRVIWAYGEKEGLQFTLFRPFNWMGPRL 498 (660)
T ss_dssp CTTHHHHHHHHHHHHHHHHHHHHHCCCEEEEEECSEESTTS
T ss_pred CCCCCcHHHHHHHHHHHHHHHHHcCCCEEEECCCcccCCCc
Confidence 12235788899999998888888899999999999999753
|
| >3d7l_A LIN1944 protein; APC89317, structural genomics, PS protein structure initiative, midwest center for structural genomics, MCSG; 2.06A {Listeria innocua} | Back alignment and structure |
|---|
Probab=98.97 E-value=1.4e-10 Score=98.61 Aligned_cols=136 Identities=10% Similarity=0.064 Sum_probs=86.1
Q ss_pred CCcEEEEEcCCChhHHHHHHHHHhcccCCCCCCeEEEEEecccchhhhhhhHhhhhhhccCCccceEEeCCHHHHhC---
Q 019990 4 NPLRVLVTGAAGQIGYALVPMIARGIMLGPDQPVILHMLDIEPAAEALNGVKMELIDAAFPLLKGVVATTDVVEACK--- 80 (332)
Q Consensus 4 ~~~kI~VtGaaG~IGs~l~~~L~~~~~~~~~~~~~i~l~D~~~~~~~~~~~~~dl~~~~~~~~~~v~~~~~~~~a~~--- 80 (332)
++|||+||||+|+||++++..|+ .|. +|++++++.. . ...| +....++.++++
T Consensus 2 ~kM~vlVtGasg~iG~~~~~~l~-~g~-------~V~~~~r~~~--~---~~~D-----------~~~~~~~~~~~~~~~ 57 (202)
T 3d7l_A 2 NAMKILLIGASGTLGSAVKERLE-KKA-------EVITAGRHSG--D---VTVD-----------ITNIDSIKKMYEQVG 57 (202)
T ss_dssp CSCEEEEETTTSHHHHHHHHHHT-TTS-------EEEEEESSSS--S---EECC-----------TTCHHHHHHHHHHHC
T ss_pred CCcEEEEEcCCcHHHHHHHHHHH-CCC-------eEEEEecCcc--c---eeee-----------cCCHHHHHHHHHHhC
Confidence 34689999999999999999999 775 8999987531 0 1112 222223333333
Q ss_pred CCcEEEEecCCCCCCC---CCh---hHHHhhhHHHHHHHHHHHHhhcCCCcEEEEEeCChhhHHHHHHHHCCCCCCCcEE
Q 019990 81 DVNIAVMVGGFPRKEG---MER---KDVMSKNVSIYKAQASALEKHAAPNCKVLVVANPANTNALILKEFAPSIPAKNIT 154 (332)
Q Consensus 81 ~aDiVi~~ag~~~~~~---~~~---~~~~~~N~~~~~~i~~~i~~~~~~~~~viv~snp~~~~~~~~~~~~~~~~~~~i~ 154 (332)
..|+|||+||...... .+. ...++.|+.....+++.+.++-....+++++|+.... .+.++...|
T Consensus 58 ~~d~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~iv~~sS~~~~---------~~~~~~~~Y 128 (202)
T 3d7l_A 58 KVDAIVSATGSATFSPLTELTPEKNAVTISSKLGGQINLVLLGIDSLNDKGSFTLTTGIMME---------DPIVQGASA 128 (202)
T ss_dssp CEEEEEECCCCCCCCCGGGCCHHHHHHHHHTTTHHHHHHHHTTGGGEEEEEEEEEECCGGGT---------SCCTTCHHH
T ss_pred CCCEEEECCCCCCCCChhhCCHHHHHHHHhhccHHHHHHHHHHHHHhccCCEEEEEcchhhc---------CCCCccHHH
Confidence 4899999998643211 122 2345788888888888887763112466666653211 223444467
Q ss_pred EeecccHHHHHHHHHHHc
Q 019990 155 CLTRLDHNRAMGQISERL 172 (332)
Q Consensus 155 ~~t~l~~~r~~~~~a~~~ 172 (332)
+.+|...+.+...+++.+
T Consensus 129 ~~sK~~~~~~~~~~~~e~ 146 (202)
T 3d7l_A 129 AMANGAVTAFAKSAAIEM 146 (202)
T ss_dssp HHHHHHHHHHHHHHTTSC
T ss_pred HHHHHHHHHHHHHHHHHc
Confidence 777777777777776654
|
| >1fmc_A 7 alpha-hydroxysteroid dehydrogenase; short-chain dehydrogenase/reductase, bIle acid catabolism, oxidoreductase; HET: CHO NAD; 1.80A {Escherichia coli} SCOP: c.2.1.2 PDB: 1ahi_A* 1ahh_A* | Back alignment and structure |
|---|
Probab=98.97 E-value=5.4e-10 Score=98.37 Aligned_cols=161 Identities=14% Similarity=0.109 Sum_probs=97.7
Q ss_pred CCcEEEEEcCCChhHHHHHHHHHhcccCCCCCCeEEEEEecccchhhhhhhHhhhhhhc--c-CCccceEEeCCHHHHhC
Q 019990 4 NPLRVLVTGAAGQIGYALVPMIARGIMLGPDQPVILHMLDIEPAAEALNGVKMELIDAA--F-PLLKGVVATTDVVEACK 80 (332)
Q Consensus 4 ~~~kI~VtGaaG~IGs~l~~~L~~~~~~~~~~~~~i~l~D~~~~~~~~~~~~~dl~~~~--~-~~~~~v~~~~~~~~a~~ 80 (332)
+.++|+||||+|+||++++..|++.|. +|+++|++. +.+.....++.... . ....|++...++.++++
T Consensus 10 ~~~~vlVtGasggiG~~la~~l~~~G~-------~V~~~~r~~--~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~ 80 (255)
T 1fmc_A 10 DGKCAIITGAGAGIGKEIAITFATAGA-------SVVVSDINA--DAANHVVDEIQQLGGQAFACRCDITSEQELSALAD 80 (255)
T ss_dssp TTCEEEETTTTSHHHHHHHHHHHTTTC-------EEEEEESCH--HHHHHHHHHHHHTTCCEEEEECCTTCHHHHHHHHH
T ss_pred CCCEEEEECCccHHHHHHHHHHHHCCC-------EEEEEcCCH--HHHHHHHHHHHHhCCceEEEEcCCCCHHHHHHHHH
Confidence 457899999999999999999999875 899999864 23332223332211 0 11134433333444443
Q ss_pred -------CCcEEEEecCCCCCC--CCCh---hHHHhhhHHHHHHHHHHHH----hhcCCCcEEEEEeCChhhHHHHHHHH
Q 019990 81 -------DVNIAVMVGGFPRKE--GMER---KDVMSKNVSIYKAQASALE----KHAAPNCKVLVVANPANTNALILKEF 144 (332)
Q Consensus 81 -------~aDiVi~~ag~~~~~--~~~~---~~~~~~N~~~~~~i~~~i~----~~~~~~~~viv~snp~~~~~~~~~~~ 144 (332)
+.|+|||.||..... ..+. ...++.|+.....+.+.+. +.+ ..+++++|+....
T Consensus 81 ~~~~~~~~~d~vi~~Ag~~~~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~--~~~iv~~sS~~~~-------- 150 (255)
T 1fmc_A 81 FAISKLGKVDILVNNAGGGGPKPFDMPMADFRRAYELNVFSFFHLSQLVAPEMEKNG--GGVILTITSMAAE-------- 150 (255)
T ss_dssp HHHHHHSSCCEEEECCCCCCCCCTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHT--CEEEEEECCGGGT--------
T ss_pred HHHHhcCCCCEEEECCCCCCCCCCCCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcC--CcEEEEEcchhhc--------
Confidence 899999999874321 1222 2356778877766666654 332 3566777753221
Q ss_pred CCCCCCCcEEEeecccHHHHHHHHHHHcCCCCCCeeeeEEEec
Q 019990 145 APSIPAKNITCLTRLDHNRAMGQISERLKVHVSDVKNVIIWGN 187 (332)
Q Consensus 145 ~~~~~~~~i~~~t~l~~~r~~~~~a~~~~v~~~~v~~~~V~G~ 187 (332)
.+.++...|+.+|...+.+...+++.++ +..++. +++.+
T Consensus 151 -~~~~~~~~Y~~sK~a~~~~~~~~~~~~~--~~~i~v-~~v~P 189 (255)
T 1fmc_A 151 -NKNINMTSYASSKAAASHLVRNMAFDLG--EKNIRV-NGIAP 189 (255)
T ss_dssp -CCCTTCHHHHHHHHHHHHHHHHHHHHHH--TTTEEE-EEEEE
T ss_pred -CCCCCCcccHHHHHHHHHHHHHHHHHhh--hcCcEE-EEEec
Confidence 2234444678888888888888887764 334553 33443
|
| >3awd_A GOX2181, putative polyol dehydrogenase; oxidoreductase; 1.80A {Gluconobacter oxydans} | Back alignment and structure |
|---|
Probab=98.96 E-value=1.1e-09 Score=96.85 Aligned_cols=151 Identities=15% Similarity=0.153 Sum_probs=91.4
Q ss_pred CCcEEEEEcCCChhHHHHHHHHHhcccCCCCCCeEEEEEecccchhhhhhhHhhhhhhc--c-CCccceEEeCCHHHHhC
Q 019990 4 NPLRVLVTGAAGQIGYALVPMIARGIMLGPDQPVILHMLDIEPAAEALNGVKMELIDAA--F-PLLKGVVATTDVVEACK 80 (332)
Q Consensus 4 ~~~kI~VtGaaG~IGs~l~~~L~~~~~~~~~~~~~i~l~D~~~~~~~~~~~~~dl~~~~--~-~~~~~v~~~~~~~~a~~ 80 (332)
+.++|+||||+|+||++++..|++.|. +|+++|++. +.+.....++.... . ....|++...++.++++
T Consensus 12 ~~k~vlItGasggiG~~la~~l~~~G~-------~V~~~~r~~--~~~~~~~~~l~~~~~~~~~~~~D~~~~~~~~~~~~ 82 (260)
T 3awd_A 12 DNRVAIVTGGAQNIGLACVTALAEAGA-------RVIIADLDE--AMATKAVEDLRMEGHDVSSVVMDVTNTESVQNAVR 82 (260)
T ss_dssp TTCEEEEETTTSHHHHHHHHHHHHTTC-------EEEEEESCH--HHHHHHHHHHHHTTCCEEEEECCTTCHHHHHHHHH
T ss_pred CCCEEEEeCCCchHHHHHHHHHHHCCC-------EEEEEeCCH--HHHHHHHHHHHhcCCceEEEEecCCCHHHHHHHHH
Confidence 457899999999999999999999885 899999863 22322222332211 0 11234433333444443
Q ss_pred -------CCcEEEEecCCCC-C-C--CCCh---hHHHhhhHHHHHHHHHHHHhhc--CCCcEEEEEeCChhhHHHHHHHH
Q 019990 81 -------DVNIAVMVGGFPR-K-E--GMER---KDVMSKNVSIYKAQASALEKHA--APNCKVLVVANPANTNALILKEF 144 (332)
Q Consensus 81 -------~aDiVi~~ag~~~-~-~--~~~~---~~~~~~N~~~~~~i~~~i~~~~--~~~~~viv~snp~~~~~~~~~~~ 144 (332)
+.|+|||.||... . + ..+. ...++.|+.....+.+.+..+- ....+++++|+....
T Consensus 83 ~~~~~~~~id~vi~~Ag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~iv~~sS~~~~-------- 154 (260)
T 3awd_A 83 SVHEQEGRVDILVACAGICISEVKAEDMTDGQWLKQVDINLNGMFRSCQAVGRIMLEQKQGVIVAIGSMSGL-------- 154 (260)
T ss_dssp HHHHHHSCCCEEEECCCCCCCSCCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCGGGT--------
T ss_pred HHHHHcCCCCEEEECCCCCCCCCCcccCCHHHHHHHHHhccHHHHHHHHHHHHHHhhcCCCEEEEEecchhc--------
Confidence 7899999998643 1 1 1222 2356778777766666655421 023566777653221
Q ss_pred CCCCCCC--cEEEeecccHHHHHHHHHHHc
Q 019990 145 APSIPAK--NITCLTRLDHNRAMGQISERL 172 (332)
Q Consensus 145 ~~~~~~~--~i~~~t~l~~~r~~~~~a~~~ 172 (332)
.+.+.. ..|+.+|...+.+...+++.+
T Consensus 155 -~~~~~~~~~~Y~~sK~a~~~~~~~l~~e~ 183 (260)
T 3awd_A 155 -IVNRPQQQAAYNASKAGVHQYIRSLAAEW 183 (260)
T ss_dssp -SCCSSSCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred -ccCCCCCccccHHHHHHHHHHHHHHHHHh
Confidence 112222 457888888888888888774
|
| >1nff_A Putative oxidoreductase RV2002; directed evolution, GFP, SDR, hydroxysteroid dehydrogenase, structural genomics, PSI; HET: NAD; 1.80A {Mycobacterium tuberculosis} SCOP: c.2.1.2 PDB: 1nfq_A* 1nfr_A* | Back alignment and structure |
|---|
Probab=98.96 E-value=1.1e-09 Score=97.26 Aligned_cols=149 Identities=15% Similarity=0.108 Sum_probs=91.0
Q ss_pred CCcEEEEEcCCChhHHHHHHHHHhcccCCCCCCeEEEEEecccchhhhhhhHhhhhhhccCCccceEEeCCHHHHhC---
Q 019990 4 NPLRVLVTGAAGQIGYALVPMIARGIMLGPDQPVILHMLDIEPAAEALNGVKMELIDAAFPLLKGVVATTDVVEACK--- 80 (332)
Q Consensus 4 ~~~kI~VtGaaG~IGs~l~~~L~~~~~~~~~~~~~i~l~D~~~~~~~~~~~~~dl~~~~~~~~~~v~~~~~~~~a~~--- 80 (332)
+.++|+||||+|+||++++..|++.|. +|++.|++. +.+.....++.........|++...++.++++
T Consensus 6 ~~k~vlVTGas~gIG~~ia~~l~~~G~-------~V~~~~r~~--~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~ 76 (260)
T 1nff_A 6 TGKVALVSGGARGMGASHVRAMVAEGA-------KVVFGDILD--EEGKAMAAELADAARYVHLDVTQPAQWKAAVDTAV 76 (260)
T ss_dssp TTCEEEEETTTSHHHHHHHHHHHHTTC-------EEEEEESCH--HHHHHHHHHTGGGEEEEECCTTCHHHHHHHHHHHH
T ss_pred CCCEEEEeCCCCHHHHHHHHHHHHCCC-------EEEEEeCCH--HHHHHHHHHhhcCceEEEecCCCHHHHHHHHHHHH
Confidence 357899999999999999999999886 899999864 22322222222111111234443334444444
Q ss_pred ----CCcEEEEecCCCCCC---CCCh---hHHHhhhHHHH----HHHHHHHHhhcCCCcEEEEEeCChhhHHHHHHHHCC
Q 019990 81 ----DVNIAVMVGGFPRKE---GMER---KDVMSKNVSIY----KAQASALEKHAAPNCKVLVVANPANTNALILKEFAP 146 (332)
Q Consensus 81 ----~aDiVi~~ag~~~~~---~~~~---~~~~~~N~~~~----~~i~~~i~~~~~~~~~viv~snp~~~~~~~~~~~~~ 146 (332)
+.|++||.||..... ..+. ...++.|+... +.+++.+++.. ..++|++|+.... .
T Consensus 77 ~~~g~iD~lv~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~--~g~iv~isS~~~~---------~ 145 (260)
T 1nff_A 77 TAFGGLHVLVNNAGILNIGTIEDYALTEWQRILDVNLTGVFLGIRAVVKPMKEAG--RGSIINISSIEGL---------A 145 (260)
T ss_dssp HHHSCCCEEEECCCCCCCBCTTTSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHT--CEEEEEECCGGGT---------S
T ss_pred HHcCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcC--CCEEEEEeehhhc---------C
Confidence 799999999974321 1222 23567777666 45555555543 4577777764321 1
Q ss_pred CCCCCcEEEeecccHHHHHHHHHHHc
Q 019990 147 SIPAKNITCLTRLDHNRAMGQISERL 172 (332)
Q Consensus 147 ~~~~~~i~~~t~l~~~r~~~~~a~~~ 172 (332)
+.++...|+.+|.....+.+.+++.+
T Consensus 146 ~~~~~~~Y~~sK~a~~~~~~~la~e~ 171 (260)
T 1nff_A 146 GTVACHGYTATKFAVRGLTKSTALEL 171 (260)
T ss_dssp CCTTBHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCchhHHHHHHHHHHHHHHHHHHh
Confidence 23333457777877778877787775
|
| >1cyd_A Carbonyl reductase; short-chain dehydrogenase, oxidoreductase; HET: NAP; 1.80A {Mus musculus} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=98.96 E-value=1e-09 Score=95.99 Aligned_cols=151 Identities=15% Similarity=0.087 Sum_probs=92.5
Q ss_pred CCcEEEEEcCCChhHHHHHHHHHhcccCCCCCCeEEEEEecccchhhhhhhHhhhhhhccCCccceEEeCCHHHHhC---
Q 019990 4 NPLRVLVTGAAGQIGYALVPMIARGIMLGPDQPVILHMLDIEPAAEALNGVKMELIDAAFPLLKGVVATTDVVEACK--- 80 (332)
Q Consensus 4 ~~~kI~VtGaaG~IGs~l~~~L~~~~~~~~~~~~~i~l~D~~~~~~~~~~~~~dl~~~~~~~~~~v~~~~~~~~a~~--- 80 (332)
+.++|+||||+|+||++++..|++.|. +|+++|++. +.+.....++.... ....|+....++.++++
T Consensus 6 ~~~~vlVTGasggiG~~~a~~l~~~G~-------~V~~~~r~~--~~~~~~~~~~~~~~-~~~~D~~~~~~~~~~~~~~~ 75 (244)
T 1cyd_A 6 SGLRALVTGAGKGIGRDTVKALHASGA-------KVVAVTRTN--SDLVSLAKECPGIE-PVCVDLGDWDATEKALGGIG 75 (244)
T ss_dssp TTCEEEEESTTSHHHHHHHHHHHHTTC-------EEEEEESCH--HHHHHHHHHSTTCE-EEECCTTCHHHHHHHHTTCC
T ss_pred CCCEEEEeCCCchHHHHHHHHHHHCCC-------EEEEEeCCH--HHHHHHHHhccCCC-cEEecCCCHHHHHHHHHHcC
Confidence 457899999999999999999999885 899999853 22222111111110 01234433334455554
Q ss_pred CCcEEEEecCCCCCC---CCCh---hHHHhhhHHHHHHHHHHHHhhc---CCCcEEEEEeCChhhHHHHHHHHCCCCCCC
Q 019990 81 DVNIAVMVGGFPRKE---GMER---KDVMSKNVSIYKAQASALEKHA---APNCKVLVVANPANTNALILKEFAPSIPAK 151 (332)
Q Consensus 81 ~aDiVi~~ag~~~~~---~~~~---~~~~~~N~~~~~~i~~~i~~~~---~~~~~viv~snp~~~~~~~~~~~~~~~~~~ 151 (332)
..|+|||.||..... ..+. ...+..|+.....+.+.+..+. ....++|++|+.... .+.+..
T Consensus 76 ~id~vi~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~~~~iv~~sS~~~~---------~~~~~~ 146 (244)
T 1cyd_A 76 PVDLLVNNAALVIMQPFLEVTKEAFDRSFSVNLRSVFQVSQMVARDMINRGVPGSIVNVSSMVAH---------VTFPNL 146 (244)
T ss_dssp CCSEEEECCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCCEEEEEECCGGGT---------SCCTTB
T ss_pred CCCEEEECCcccCCCCcccCCHHHHHHHHhhhhHHHHHHHHHHHHHHHhCCCCeEEEEEcchhhc---------CCCCCc
Confidence 479999999864321 1122 2356778877666666655431 113577777764221 123334
Q ss_pred cEEEeecccHHHHHHHHHHHcC
Q 019990 152 NITCLTRLDHNRAMGQISERLK 173 (332)
Q Consensus 152 ~i~~~t~l~~~r~~~~~a~~~~ 173 (332)
..|+.+|...+.+...+++.++
T Consensus 147 ~~Y~~sK~a~~~~~~~~a~~~~ 168 (244)
T 1cyd_A 147 ITYSSTKGAMTMLTKAMAMELG 168 (244)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHG
T ss_pred chhHHHHHHHHHHHHHHHHHhh
Confidence 4678888888888888888754
|
| >2cfc_A 2-(R)-hydroxypropyl-COM dehydrogenase; NAD, oxidoreductase; HET: NAD KPC; 1.8A {Xanthobacter autotrophicus} | Back alignment and structure |
|---|
Probab=98.93 E-value=1.7e-09 Score=94.93 Aligned_cols=148 Identities=16% Similarity=0.125 Sum_probs=88.3
Q ss_pred CcEEEEEcCCChhHHHHHHHHHhcccCCCCCCeEEEEEecccchhhhhhhHhhh-hhh--c-cCCccceEEeCCHHHHhC
Q 019990 5 PLRVLVTGAAGQIGYALVPMIARGIMLGPDQPVILHMLDIEPAAEALNGVKMEL-IDA--A-FPLLKGVVATTDVVEACK 80 (332)
Q Consensus 5 ~~kI~VtGaaG~IGs~l~~~L~~~~~~~~~~~~~i~l~D~~~~~~~~~~~~~dl-~~~--~-~~~~~~v~~~~~~~~a~~ 80 (332)
+++|+||||+|+||++++..|++.|. +|+++|++. +.+.....++ ... . .....|+....++.++++
T Consensus 2 ~k~vlItGasggiG~~~a~~l~~~G~-------~V~~~~r~~--~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~ 72 (250)
T 2cfc_A 2 SRVAIVTGASSGNGLAIATRFLARGD-------RVAALDLSA--ETLEETARTHWHAYADKVLRVRADVADEGDVNAAIA 72 (250)
T ss_dssp CCEEEEETTTSHHHHHHHHHHHHTTC-------EEEEEESCH--HHHHHHHHHHSTTTGGGEEEEECCTTCHHHHHHHHH
T ss_pred CCEEEEeCCCchHHHHHHHHHHHCCC-------EEEEEeCCH--HHHHHHHHHHHHhcCCcEEEEEecCCCHHHHHHHHH
Confidence 35799999999999999999999885 899999853 2233222222 110 0 011234433333444443
Q ss_pred -------CCcEEEEecCCCCCCC------CCh---hHHHhhhHHHHH----HHHHHHHhhcCCCcEEEEEeCChhhHHHH
Q 019990 81 -------DVNIAVMVGGFPRKEG------MER---KDVMSKNVSIYK----AQASALEKHAAPNCKVLVVANPANTNALI 140 (332)
Q Consensus 81 -------~aDiVi~~ag~~~~~~------~~~---~~~~~~N~~~~~----~i~~~i~~~~~~~~~viv~snp~~~~~~~ 140 (332)
+.|+|||.||...... .+. ...+..|+.... .+++.+++.. ..++|++|+....
T Consensus 73 ~~~~~~~~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~--~~~iv~isS~~~~---- 146 (250)
T 2cfc_A 73 ATMEQFGAIDVLVNNAGITGNSEAGVLHTTPVEQFDKVMAVNVRGIFLGCRAVLPHMLLQG--AGVIVNIASVASL---- 146 (250)
T ss_dssp HHHHHHSCCCEEEECCCCCCCTTCCSGGGSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHT--CEEEEEECCGGGT----
T ss_pred HHHHHhCCCCEEEECCCCCCCCCcchhhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhCC--CCEEEEECChhhc----
Confidence 7999999998743211 122 234566766554 4444444443 3577777754321
Q ss_pred HHHHCCCCCCCcEEEeecccHHHHHHHHHHHc
Q 019990 141 LKEFAPSIPAKNITCLTRLDHNRAMGQISERL 172 (332)
Q Consensus 141 ~~~~~~~~~~~~i~~~t~l~~~r~~~~~a~~~ 172 (332)
.+.++...|+.+|.....+...+++.+
T Consensus 147 -----~~~~~~~~Y~~sK~a~~~~~~~l~~e~ 173 (250)
T 2cfc_A 147 -----VAFPGRSAYTTSKGAVLQLTKSVAVDY 173 (250)
T ss_dssp -----SCCTTCHHHHHHHHHHHHHHHHHHHHH
T ss_pred -----cCCCCchhHHHHHHHHHHHHHHHHHHh
Confidence 123344467788888888888888776
|
| >3d3w_A L-xylulose reductase; uronate cycle, short-chain dehydrogenase/reductase(SDR) superfamily, glucose metabolism, acetylation, carbohydrate metabolism; HET: NAP; 1.87A {Homo sapiens} PDB: 1wnt_A* 1pr9_A* | Back alignment and structure |
|---|
Probab=98.91 E-value=1.9e-09 Score=94.40 Aligned_cols=157 Identities=13% Similarity=0.120 Sum_probs=94.9
Q ss_pred CCcEEEEEcCCChhHHHHHHHHHhcccCCCCCCeEEEEEecccchhhhhhhHhhhhhhccCCccceEEeCCHHHHhC---
Q 019990 4 NPLRVLVTGAAGQIGYALVPMIARGIMLGPDQPVILHMLDIEPAAEALNGVKMELIDAAFPLLKGVVATTDVVEACK--- 80 (332)
Q Consensus 4 ~~~kI~VtGaaG~IGs~l~~~L~~~~~~~~~~~~~i~l~D~~~~~~~~~~~~~dl~~~~~~~~~~v~~~~~~~~a~~--- 80 (332)
+.++|+||||+|+||++++..|++.|. +|+++|++. +.+.....++.... ....|+....++.++++
T Consensus 6 ~~k~vlITGasggiG~~~a~~l~~~G~-------~V~~~~r~~--~~~~~~~~~~~~~~-~~~~D~~~~~~~~~~~~~~~ 75 (244)
T 3d3w_A 6 AGRRVLVTGAGKGIGRGTVQALHATGA-------RVVAVSRTQ--ADLDSLVRECPGIE-PVCVDLGDWEATERALGSVG 75 (244)
T ss_dssp TTCEEEEESTTSHHHHHHHHHHHHTTC-------EEEEEESCH--HHHHHHHHHSTTCE-EEECCTTCHHHHHHHHTTCC
T ss_pred CCcEEEEECCCcHHHHHHHHHHHHCCC-------EEEEEeCCH--HHHHHHHHHcCCCC-EEEEeCCCHHHHHHHHHHcC
Confidence 457899999999999999999999885 899999753 22222111111110 01234433334445554
Q ss_pred CCcEEEEecCCCCCC---CCCh---hHHHhhhHHHHHHHHHHHHhhc---CCCcEEEEEeCChhhHHHHHHHHCCCCCCC
Q 019990 81 DVNIAVMVGGFPRKE---GMER---KDVMSKNVSIYKAQASALEKHA---APNCKVLVVANPANTNALILKEFAPSIPAK 151 (332)
Q Consensus 81 ~aDiVi~~ag~~~~~---~~~~---~~~~~~N~~~~~~i~~~i~~~~---~~~~~viv~snp~~~~~~~~~~~~~~~~~~ 151 (332)
..|+|||.||..... ..+. ...++.|+.....+.+.+..+. ....+++++|+.... .+.++.
T Consensus 76 ~id~vi~~Ag~~~~~~~~~~~~~~~~~~~~~N~~~~~~~~~~~~~~~~~~~~~~~iv~~sS~~~~---------~~~~~~ 146 (244)
T 3d3w_A 76 PVDLLVNNAAVALLQPFLEVTKEAFDRSFEVNLRAVIQVSQIVARGLIARGVPGAIVNVSSQCSQ---------RAVTNH 146 (244)
T ss_dssp CCCEEEECCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCCEEEEEECCGGGT---------SCCTTB
T ss_pred CCCEEEECCccCCCcchhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhCCCCcEEEEeCchhhc---------cCCCCC
Confidence 579999999874321 1121 2356778777666666554431 113577777764321 223444
Q ss_pred cEEEeecccHHHHHHHHHHHcCCCCCCeee
Q 019990 152 NITCLTRLDHNRAMGQISERLKVHVSDVKN 181 (332)
Q Consensus 152 ~i~~~t~l~~~r~~~~~a~~~~v~~~~v~~ 181 (332)
..|+.+|...+.+...+++.++ +..++.
T Consensus 147 ~~Y~~sK~a~~~~~~~la~e~~--~~~i~v 174 (244)
T 3d3w_A 147 SVYCSTKGALDMLTKVMALELG--PHKIRV 174 (244)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHG--GGTEEE
T ss_pred chHHHHHHHHHHHHHHHHHHhc--ccCeEE
Confidence 4678888888888888888764 234553
|
| >4f6l_B AUSA reductase domain protein; thioester reductase, oxidoreductase; 3.86A {Staphylococcus aureus} | Back alignment and structure |
|---|
Probab=98.91 E-value=9.4e-10 Score=106.99 Aligned_cols=171 Identities=12% Similarity=0.031 Sum_probs=103.9
Q ss_pred CCcEEEEEcCCChhHHHHHHHHHhcccCCCCCCeEEEEEecccchh-hhhhhHhhhhhh-----------cc-CCccceE
Q 019990 4 NPLRVLVTGAAGQIGYALVPMIARGIMLGPDQPVILHMLDIEPAAE-ALNGVKMELIDA-----------AF-PLLKGVV 70 (332)
Q Consensus 4 ~~~kI~VtGaaG~IGs~l~~~L~~~~~~~~~~~~~i~l~D~~~~~~-~~~~~~~dl~~~-----------~~-~~~~~v~ 70 (332)
++++|+||||+||||++++..|...+. +|+++++..... ........+... .. ....|+.
T Consensus 149 ~~~~VLVTGatG~iG~~l~~~L~~~g~-------~V~~l~R~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~v~~v~~Dl~ 221 (508)
T 4f6l_B 149 PLGNTLLTGATGFLGAYLIEALQGYSH-------RIYCFIRADNEEIAWYKLMTNLNDYFSEETVEMMLSNIEVIVGDFE 221 (508)
T ss_dssp CCEEEEESCTTSHHHHHHHHHTBTTEE-------EEEEEEESSSHHHHHHHHHHHHHHHSCHHHHHHHSTTEEEEEEBTT
T ss_pred CCCeEEEECCccchHHHHHHHHHhcCC-------EEEEEECCCChHHHHHHHHHHHHHhcccccchhccCceEEEecCCc
Confidence 468999999999999999999966664 899888765321 111111111110 00 1112333
Q ss_pred EeCCHHHHhCCCcEEEEecCCCCCCCCChhHHHhhhHHHHHHHHHHHHhhcCCCcEEEEEeCChhhHHH---------HH
Q 019990 71 ATTDVVEACKDVNIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEKHAAPNCKVLVVANPANTNAL---------IL 141 (332)
Q Consensus 71 ~~~~~~~a~~~aDiVi~~ag~~~~~~~~~~~~~~~N~~~~~~i~~~i~~~~~~~~~viv~snp~~~~~~---------~~ 141 (332)
....+. +..++|+|||+|+.... ..+..++...|+.+++++++++.+ . ..+++++|+.. + .. .+
T Consensus 222 d~~~l~-~~~~~D~Vih~Aa~~~~-~~~~~~~~~~Nv~gt~~ll~~a~~-~--~~~~v~iSS~~-v-G~~~~~~~~~~~~ 294 (508)
T 4f6l_B 222 CMDDVV-LPENMDTIIHAGARTDH-FGDDDEFEKVNVQGTVDVIRLAQQ-H--HARLIYVSTIS-V-GTYFDIDTEDVTF 294 (508)
T ss_dssp BCSSCC-CSSCCSEEEECCCC---------CCHHHHHHHHHHHHHHHHT-T--TCEEEEEEESC-T-TSEECTTCSCCEE
T ss_pred ccccCC-CccCCCEEEECCceecC-CCCHHHHhhhHHHHHHHHHHHHHh-C--CCcEEEeCChh-h-ccCCccCCcCccc
Confidence 322332 56799999999987532 223345678899999999999988 3 23566666421 1 00 00
Q ss_pred HHHCC--CCCCCcEEEeecccHHHHHHHHHHHcCCCCCCeeeeEEEecCC
Q 019990 142 KEFAP--SIPAKNITCLTRLDHNRAMGQISERLKVHVSDVKNVIIWGNHS 189 (332)
Q Consensus 142 ~~~~~--~~~~~~i~~~t~l~~~r~~~~~a~~~~v~~~~v~~~~V~G~hg 189 (332)
.+... +.++...|+.+|...+++...+++ .|++...+|...|+|+..
T Consensus 295 ~E~~~~~~~~~~~~Y~~sK~~~E~~~~~~~~-~gi~~~ilRp~~v~G~~~ 343 (508)
T 4f6l_B 295 SEADVYKGQLLTSPYTRSKFYSELKVLEAVN-NGLDGRIVRVGNLTSPYN 343 (508)
T ss_dssp CTTCSCSSBCCCSHHHHHHHHHHHHHHHHHH-TTCEEEEEEECCEESCSS
T ss_pred ccccccccccCCCcHHHHHHHHHHHHHHHHH-cCCCEEEEecceeccCCC
Confidence 01000 011334678888988888877654 699999999999999754
|
| >1xq1_A Putative tropinone reducatse; structural genomics, protein structure initiative, CESG, AT1 reductively methylated protein; 2.10A {Arabidopsis thaliana} SCOP: c.2.1.2 PDB: 2q45_A | Back alignment and structure |
|---|
Probab=98.91 E-value=1.5e-09 Score=96.40 Aligned_cols=150 Identities=15% Similarity=0.078 Sum_probs=87.7
Q ss_pred CCCcEEEEEcCCChhHHHHHHHHHhcccCCCCCCeEEEEEecccchhhhhhhHhhhhhhc--c-CCccceEEeCCHHHHh
Q 019990 3 KNPLRVLVTGAAGQIGYALVPMIARGIMLGPDQPVILHMLDIEPAAEALNGVKMELIDAA--F-PLLKGVVATTDVVEAC 79 (332)
Q Consensus 3 ~~~~kI~VtGaaG~IGs~l~~~L~~~~~~~~~~~~~i~l~D~~~~~~~~~~~~~dl~~~~--~-~~~~~v~~~~~~~~a~ 79 (332)
.+.++|+||||+|+||++++..|++.|. +|++++++. +.+.....++.... . ....|+....++.+++
T Consensus 12 l~~k~vlITGasggiG~~la~~l~~~G~-------~V~~~~r~~--~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~ 82 (266)
T 1xq1_A 12 LKAKTVLVTGGTKGIGHAIVEEFAGFGA-------VIHTCARNE--YELNECLSKWQKKGFQVTGSVCDASLRPEREKLM 82 (266)
T ss_dssp CTTCEEEETTTTSHHHHHHHHHHHHTTC-------EEEEEESCH--HHHHHHHHHHHHTTCCEEEEECCTTSHHHHHHHH
T ss_pred CCCCEEEEECCCCHHHHHHHHHHHHCCC-------EEEEEeCCH--HHHHHHHHHHHhcCCeeEEEECCCCCHHHHHHHH
Confidence 3457899999999999999999999885 899999853 22332222332211 0 1112333222333333
Q ss_pred --------CCCcEEEEecCCCCCC---CCCh---hHHHhhhHHHHHHHHHHH----HhhcCCCcEEEEEeCChhhHHHHH
Q 019990 80 --------KDVNIAVMVGGFPRKE---GMER---KDVMSKNVSIYKAQASAL----EKHAAPNCKVLVVANPANTNALIL 141 (332)
Q Consensus 80 --------~~aDiVi~~ag~~~~~---~~~~---~~~~~~N~~~~~~i~~~i----~~~~~~~~~viv~snp~~~~~~~~ 141 (332)
.+.|+|||.||..... ..+. ...++.|+.....+.+++ ++.. ..++|++|+....
T Consensus 83 ~~~~~~~~~~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~n~~g~~~l~~~~~~~~~~~~--~~~iv~isS~~~~----- 155 (266)
T 1xq1_A 83 QTVSSMFGGKLDILINNLGAIRSKPTLDYTAEDFSFHISTNLESAYHLSQLAHPLLKASG--CGNIIFMSSIAGV----- 155 (266)
T ss_dssp HHHHHHHTTCCSEEEEECCC------CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS--SCEEEEEC----------
T ss_pred HHHHHHhCCCCcEEEECCCCCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcC--CcEEEEEccchhc-----
Confidence 5789999999874321 1222 235677888777777666 3432 3477777764321
Q ss_pred HHHCCCCCCCcEEEeecccHHHHHHHHHHHc
Q 019990 142 KEFAPSIPAKNITCLTRLDHNRAMGQISERL 172 (332)
Q Consensus 142 ~~~~~~~~~~~i~~~t~l~~~r~~~~~a~~~ 172 (332)
.+.+....|+.+|.....+...+++.+
T Consensus 156 ----~~~~~~~~Y~~sK~a~~~~~~~la~e~ 182 (266)
T 1xq1_A 156 ----VSASVGSIYSATKGALNQLARNLACEW 182 (266)
T ss_dssp ---------CCHHHHHHHHHHHHHHHHHHHH
T ss_pred ----cCCCCCchHHHHHHHHHHHHHHHHHHH
Confidence 112333356778887788888888776
|
| >3tpc_A Short chain alcohol dehydrogenase-related dehydro; structural genomics, PSI-biology, NEW YORK structural genomi research consortium; 2.34A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=98.91 E-value=1.5e-09 Score=96.08 Aligned_cols=159 Identities=16% Similarity=0.046 Sum_probs=93.9
Q ss_pred CCCcEEEEEcCCChhHHHHHHHHHhcccCCCCCCeEEEEEecccchhhhhhhHhhhhhhccCCccceEEeCCHHHHhC--
Q 019990 3 KNPLRVLVTGAAGQIGYALVPMIARGIMLGPDQPVILHMLDIEPAAEALNGVKMELIDAAFPLLKGVVATTDVVEACK-- 80 (332)
Q Consensus 3 ~~~~kI~VtGaaG~IGs~l~~~L~~~~~~~~~~~~~i~l~D~~~~~~~~~~~~~dl~~~~~~~~~~v~~~~~~~~a~~-- 80 (332)
.+.++++||||+|+||++++..|++.|. +|+++|++.. .+.....++.........|++...++.++++
T Consensus 5 l~~k~~lVTGas~gIG~aia~~l~~~G~-------~V~~~~r~~~--~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~ 75 (257)
T 3tpc_A 5 LKSRVFIVTGASSGLGAAVTRMLAQEGA-------TVLGLDLKPP--AGEEPAAELGAAVRFRNADVTNEADATAALAFA 75 (257)
T ss_dssp CTTCEEEEESTTSHHHHHHHHHHHHTTC-------EEEEEESSCC--------------CEEEECCTTCHHHHHHHHHHH
T ss_pred cCCCEEEEeCCCCHHHHHHHHHHHHCCC-------EEEEEeCChH--HHHHHHHHhCCceEEEEccCCCHHHHHHHHHHH
Confidence 3467899999999999999999999886 8999998642 2222222221110111234443333444333
Q ss_pred -----CCcEEEEecCCCCCC-------CCCh---hHHHhhhHHHHHHHHHHHHhhcC--------CCcEEEEEeCChhhH
Q 019990 81 -----DVNIAVMVGGFPRKE-------GMER---KDVMSKNVSIYKAQASALEKHAA--------PNCKVLVVANPANTN 137 (332)
Q Consensus 81 -----~aDiVi~~ag~~~~~-------~~~~---~~~~~~N~~~~~~i~~~i~~~~~--------~~~~viv~snp~~~~ 137 (332)
..|++|+.||..... ..+. ...++.|+.....+.+++..+-. ..+++|++|+....
T Consensus 76 ~~~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~m~~~~~~~~~~~g~iv~isS~~~~- 154 (257)
T 3tpc_A 76 KQEFGHVHGLVNCAGTAPGEKILGRSGPHALDSFARTVAVNLIGTFNMIRLAAEVMSQGEPDADGERGVIVNTASIAAF- 154 (257)
T ss_dssp HHHHSCCCEEEECCCCCCCCCSEETTEECCHHHHHHHHHHHTHHHHHHHHHHHHHHTTSCCCTTSCCEEEEEECCTHHH-
T ss_pred HHHcCCCCEEEECCCCCCCCccccccccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhccccCCCCCeEEEEEechhhc-
Confidence 799999999974321 1122 23567788777777666655421 23567777764321
Q ss_pred HHHHHHHCCCCCCCcEEEeecccHHHHHHHHHHHcCCCCCCeee
Q 019990 138 ALILKEFAPSIPAKNITCLTRLDHNRAMGQISERLKVHVSDVKN 181 (332)
Q Consensus 138 ~~~~~~~~~~~~~~~i~~~t~l~~~r~~~~~a~~~~v~~~~v~~ 181 (332)
.+.+....|+.+|.....+.+.+++.++ +..|+.
T Consensus 155 --------~~~~~~~~Y~asKaa~~~~~~~la~e~~--~~gi~v 188 (257)
T 3tpc_A 155 --------DGQIGQAAYAASKGGVAALTLPAARELA--RFGIRV 188 (257)
T ss_dssp --------HCCTTCHHHHHHHHHHHHHHHHHHHHHG--GGTEEE
T ss_pred --------cCCCCCcchHHHHHHHHHHHHHHHHHHH--HcCeEE
Confidence 1234444678888888888888888754 334553
|
| >2pd6_A Estradiol 17-beta-dehydrogenase 8; short-chain dehydrogenase/reductase, steroid metabolism, LIP metabolism, structural genomics; HET: NAD; 2.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.91 E-value=6.5e-10 Score=98.46 Aligned_cols=154 Identities=14% Similarity=0.096 Sum_probs=91.4
Q ss_pred CCC--CCcEEEEEcCCChhHHHHHHHHHhcccCCCCCCeEEEEEecccchhhhhhhHhhhhhh---------cc-CCccc
Q 019990 1 MAK--NPLRVLVTGAAGQIGYALVPMIARGIMLGPDQPVILHMLDIEPAAEALNGVKMELIDA---------AF-PLLKG 68 (332)
Q Consensus 1 m~~--~~~kI~VtGaaG~IGs~l~~~L~~~~~~~~~~~~~i~l~D~~~~~~~~~~~~~dl~~~---------~~-~~~~~ 68 (332)
|.. +.++|+||||+|+||++++..|++.|. +|+++|++. +.+.....++... .. ....|
T Consensus 1 m~~~~~~k~vlITGasggiG~~la~~l~~~G~-------~V~~~~r~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D 71 (264)
T 2pd6_A 1 MQNRLRSALALVTGAGSGIGRAVSVRLAGEGA-------TVAACDLDR--AAAQETVRLLGGPGSKEGPPRGNHAAFQAD 71 (264)
T ss_dssp CCCCCTTCEEEEETTTSHHHHHHHHHHHHTTC-------EEEEEESSH--HHHHHHHHTC------------CCEEEECC
T ss_pred CccccCCCEEEEECCCChHHHHHHHHHHHCCC-------EEEEEeCCh--HHHHHHHHHHHhcCccccccCcceEEEEec
Confidence 543 346899999999999999999999885 899999853 2222222222110 00 01123
Q ss_pred eEEeCCHHHHhCC-------C-cEEEEecCCCCCC---CCCh---hHHHhhhHHHHHHHHHHHHhhc---CCCcEEEEEe
Q 019990 69 VVATTDVVEACKD-------V-NIAVMVGGFPRKE---GMER---KDVMSKNVSIYKAQASALEKHA---APNCKVLVVA 131 (332)
Q Consensus 69 v~~~~~~~~a~~~-------a-DiVi~~ag~~~~~---~~~~---~~~~~~N~~~~~~i~~~i~~~~---~~~~~viv~s 131 (332)
++...++.+++++ . |+|||.||..... ..+. ...+..|+.....+.+++..+. ....++|++|
T Consensus 72 ~~~~~~~~~~~~~~~~~~g~i~d~vi~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~~g~iv~is 151 (264)
T 2pd6_A 72 VSEARAARCLLEQVQACFSRPPSVVVSCAGITQDEFLLHMSEDDWDKVIAVNLKGTFLVTQAAAQALVSNGCRGSIINIS 151 (264)
T ss_dssp TTSHHHHHHHHHHHHHHHSSCCSEEEECCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCCEEEEEEC
T ss_pred CCCHHHHHHHHHHHHHHhCCCCeEEEECCCcCCCcchhhCCHHHHHHHHhhccHHHHHHHHHHHHHHHhcCCCceEEEEC
Confidence 3333333333433 4 9999999975321 1122 2356778877777777665542 1135777777
Q ss_pred CChhhHHHHHHHHCCCCCCCcEEEeecccHHHHHHHHHHHc
Q 019990 132 NPANTNALILKEFAPSIPAKNITCLTRLDHNRAMGQISERL 172 (332)
Q Consensus 132 np~~~~~~~~~~~~~~~~~~~i~~~t~l~~~r~~~~~a~~~ 172 (332)
+.... .+.++...|+.+|.....+...+++.+
T Consensus 152 S~~~~---------~~~~~~~~Y~~sK~a~~~~~~~la~e~ 183 (264)
T 2pd6_A 152 SIVGK---------VGNVGQTNYAASKAGVIGLTQTAAREL 183 (264)
T ss_dssp CTHHH---------HCCTTBHHHHHHHHHHHHHHHHHHHHH
T ss_pred Chhhc---------cCCCCChhhHHHHHHHHHHHHHHHHHh
Confidence 64221 123444467788887778877787774
|
| >1sby_A Alcohol dehydrogenase; ternary complex, NAD, trifluoroethanol, oxidoreductase; HET: NAD; 1.10A {Scaptodrosophila lebanonensis} SCOP: c.2.1.2 PDB: 1b14_A* 1b15_A* 1a4u_A* 1b2l_A* 1b16_A* 3rj5_A* 3rj9_A* 1mg5_A* | Back alignment and structure |
|---|
Probab=98.90 E-value=3.3e-09 Score=93.54 Aligned_cols=150 Identities=14% Similarity=0.111 Sum_probs=92.6
Q ss_pred CCCCCcEEEEEcCCChhHHHHHHHHHhcccCCCCCCeEEEEEecccchhhhhhhHhhhhhh----cc-CCccceEEe-CC
Q 019990 1 MAKNPLRVLVTGAAGQIGYALVPMIARGIMLGPDQPVILHMLDIEPAAEALNGVKMELIDA----AF-PLLKGVVAT-TD 74 (332)
Q Consensus 1 m~~~~~kI~VtGaaG~IGs~l~~~L~~~~~~~~~~~~~i~l~D~~~~~~~~~~~~~dl~~~----~~-~~~~~v~~~-~~ 74 (332)
|+.+.++|+||||+|+||.+++..|++.|. ..|+++|++...+.+. ++... .. ....|++.. .+
T Consensus 1 m~l~~k~vlVtGas~gIG~~~a~~l~~~G~------~~v~~~~r~~~~~~~~----~l~~~~~~~~~~~~~~D~~~~~~~ 70 (254)
T 1sby_A 1 MDLTNKNVIFVAALGGIGLDTSRELVKRNL------KNFVILDRVENPTALA----ELKAINPKVNITFHTYDVTVPVAE 70 (254)
T ss_dssp CCCTTCEEEEETTTSHHHHHHHHHHHHTCC------SEEEEEESSCCHHHHH----HHHHHCTTSEEEEEECCTTSCHHH
T ss_pred CCCCCcEEEEECCCChHHHHHHHHHHHCCC------cEEEEEecCchHHHHH----HHHHhCCCceEEEEEEecCCChHH
Confidence 666778999999999999999999999875 1388888864221121 22111 00 111233332 22
Q ss_pred HHHHh-------CCCcEEEEecCCCCCCCCChhHHHhhhHHHHHHHHHHHHhhcC-----CCcEEEEEeCChhhHHHHHH
Q 019990 75 VVEAC-------KDVNIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEKHAA-----PNCKVLVVANPANTNALILK 142 (332)
Q Consensus 75 ~~~a~-------~~aDiVi~~ag~~~~~~~~~~~~~~~N~~~~~~i~~~i~~~~~-----~~~~viv~snp~~~~~~~~~ 142 (332)
+.+++ .+.|+|||.||... .......++.|+.....+.+++..+-. +.+++|++|+....
T Consensus 71 ~~~~~~~~~~~~g~id~lv~~Ag~~~--~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~~~~g~iv~isS~~~~------ 142 (254)
T 1sby_A 71 SKKLLKKIFDQLKTVDILINGAGILD--DHQIERTIAINFTGLVNTTTAILDFWDKRKGGPGGIIANICSVTGF------ 142 (254)
T ss_dssp HHHHHHHHHHHHSCCCEEEECCCCCC--TTCHHHHHHHHTHHHHHHHHHHHHHHCGGGTCCCEEEEEECCGGGT------
T ss_pred HHHHHHHHHHhcCCCCEEEECCccCC--HHHHhhhheeeehhHHHHHHHHHHHHHHhcCCCCCEEEEECchhhc------
Confidence 33333 37899999999742 223345678888877777776654321 13567777764321
Q ss_pred HHCCCCCCCcEEEeecccHHHHHHHHHHH
Q 019990 143 EFAPSIPAKNITCLTRLDHNRAMGQISER 171 (332)
Q Consensus 143 ~~~~~~~~~~i~~~t~l~~~r~~~~~a~~ 171 (332)
.+.+....|+.+|.....+...+++.
T Consensus 143 ---~~~~~~~~Y~~sK~a~~~~~~~la~~ 168 (254)
T 1sby_A 143 ---NAIHQVPVYSASKAAVVSFTNSLAKL 168 (254)
T ss_dssp ---SCCTTSHHHHHHHHHHHHHHHHHHHH
T ss_pred ---cCCCCchHHHHHHHHHHHHHHHHHHH
Confidence 12333346777887777777777765
|
| >3ak4_A NADH-dependent quinuclidinone reductase; SDR, (R)-3-quinuclidinol, chiral alcohol, oxidoreductase; HET: NAD; 2.00A {Agrobacterium tumefaciens} | Back alignment and structure |
|---|
Probab=98.90 E-value=2.8e-09 Score=94.57 Aligned_cols=151 Identities=13% Similarity=0.123 Sum_probs=90.3
Q ss_pred CCcEEEEEcCCChhHHHHHHHHHhcccCCCCCCeEEEEEecccchhhhhhhHhhhhhhccCCccceEEeCCHHHHhC---
Q 019990 4 NPLRVLVTGAAGQIGYALVPMIARGIMLGPDQPVILHMLDIEPAAEALNGVKMELIDAAFPLLKGVVATTDVVEACK--- 80 (332)
Q Consensus 4 ~~~kI~VtGaaG~IGs~l~~~L~~~~~~~~~~~~~i~l~D~~~~~~~~~~~~~dl~~~~~~~~~~v~~~~~~~~a~~--- 80 (332)
+.++|+||||+|+||++++..|++.|. +|+++|++. +.+.....++.........|++...++.++++
T Consensus 11 ~~k~vlVTGas~gIG~~ia~~l~~~G~-------~V~~~~r~~--~~~~~~~~~~~~~~~~~~~D~~d~~~v~~~~~~~~ 81 (263)
T 3ak4_A 11 SGRKAIVTGGSKGIGAAIARALDKAGA-------TVAIADLDV--MAAQAVVAGLENGGFAVEVDVTKRASVDAAMQKAI 81 (263)
T ss_dssp TTCEEEEETTTSHHHHHHHHHHHHTTC-------EEEEEESCH--HHHHHHHHTCTTCCEEEECCTTCHHHHHHHHHHHH
T ss_pred CCCEEEEeCCCChHHHHHHHHHHHCCC-------EEEEEeCCH--HHHHHHHHHHhcCCeEEEEeCCCHHHHHHHHHHHH
Confidence 347899999999999999999999885 899999853 22322222221100111234443334444444
Q ss_pred ----CCcEEEEecCCCCCC---CCCh---hHHHhhhHHHHHHHHHHHHhhc--CC-CcEEEEEeCChhhHHHHHHHHCCC
Q 019990 81 ----DVNIAVMVGGFPRKE---GMER---KDVMSKNVSIYKAQASALEKHA--AP-NCKVLVVANPANTNALILKEFAPS 147 (332)
Q Consensus 81 ----~aDiVi~~ag~~~~~---~~~~---~~~~~~N~~~~~~i~~~i~~~~--~~-~~~viv~snp~~~~~~~~~~~~~~ 147 (332)
+.|+|||.||..... ..+. ...++.|+.....+.+++..+- .. ..+++++|+.... .+
T Consensus 82 ~~~g~iD~lv~~Ag~~~~~~~~~~~~~~~~~~~~~n~~g~~~~~~~~~~~~~~~~~~g~iv~isS~~~~---------~~ 152 (263)
T 3ak4_A 82 DALGGFDLLCANAGVSTMRPAVDITDEEWDFNFDVNARGVFLANQIACRHFLASNTKGVIVNTASLAAK---------VG 152 (263)
T ss_dssp HHHTCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHTTCCCEEEEECCGGGT---------SC
T ss_pred HHcCCCCEEEECCCcCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCCeEEEEecccccc---------cC
Confidence 799999999974321 1122 2356677766666655554321 12 3577777753221 12
Q ss_pred CCCCcEEEeecccHHHHHHHHHHHc
Q 019990 148 IPAKNITCLTRLDHNRAMGQISERL 172 (332)
Q Consensus 148 ~~~~~i~~~t~l~~~r~~~~~a~~~ 172 (332)
.+....|+.+|.....+.+.+++.+
T Consensus 153 ~~~~~~Y~~sK~a~~~~~~~la~e~ 177 (263)
T 3ak4_A 153 APLLAHYSASKFAVFGWTQALAREM 177 (263)
T ss_dssp CTTCHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCchhHHHHHHHHHHHHHHHHHHH
Confidence 3334467778887778888888776
|
| >2o23_A HADH2 protein; HSD17B10, schad, ERAB, type II HADH, 2-methyl-3-hydroxybuTyr dehydrogenase, MHBD, structural genomics, structural genomi consortium; HET: NAD GOL; 1.20A {Homo sapiens} SCOP: c.2.1.2 PDB: 1so8_A 1u7t_A* 1e3s_A* 1e3w_B* 1e3w_A* 1e6w_A* | Back alignment and structure |
|---|
Probab=98.90 E-value=1.6e-09 Score=95.88 Aligned_cols=161 Identities=14% Similarity=0.073 Sum_probs=96.3
Q ss_pred CCCCCcEEEEEcCCChhHHHHHHHHHhcccCCCCCCeEEEEEecccchhhhhhhHhhhhhhccCCccceEEeCCHHHHhC
Q 019990 1 MAKNPLRVLVTGAAGQIGYALVPMIARGIMLGPDQPVILHMLDIEPAAEALNGVKMELIDAAFPLLKGVVATTDVVEACK 80 (332)
Q Consensus 1 m~~~~~kI~VtGaaG~IGs~l~~~L~~~~~~~~~~~~~i~l~D~~~~~~~~~~~~~dl~~~~~~~~~~v~~~~~~~~a~~ 80 (332)
|+.+.++|+||||+|+||++++..|++.|. +|+++|++.. .+.....++.........|+....++.++++
T Consensus 8 ~~~~~k~vlVTGasggiG~~~a~~l~~~G~-------~V~~~~r~~~--~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~ 78 (265)
T 2o23_A 8 RSVKGLVAVITGGASGLGLATAERLVGQGA-------SAVLLDLPNS--GGEAQAKKLGNNCVFAPADVTSEKDVQTALA 78 (265)
T ss_dssp CCCTTCEEEEETTTSHHHHHHHHHHHHTTC-------EEEEEECTTS--SHHHHHHHHCTTEEEEECCTTCHHHHHHHHH
T ss_pred cCCCCCEEEEECCCChHHHHHHHHHHHCCC-------EEEEEeCCcH--hHHHHHHHhCCceEEEEcCCCCHHHHHHHHH
Confidence 444567899999999999999999999885 8999998642 2222222221100111234433334444444
Q ss_pred -------CCcEEEEecCCCCCCC---------CCh---hHHHhhhHHHHHHHHHHHHhhcC--------CCcEEEEEeCC
Q 019990 81 -------DVNIAVMVGGFPRKEG---------MER---KDVMSKNVSIYKAQASALEKHAA--------PNCKVLVVANP 133 (332)
Q Consensus 81 -------~aDiVi~~ag~~~~~~---------~~~---~~~~~~N~~~~~~i~~~i~~~~~--------~~~~viv~snp 133 (332)
..|+|||.||...... .+. ...+..|+.....+.+.+..+-. ...++|++|+.
T Consensus 79 ~~~~~~g~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~~~~~~~~~~iv~isS~ 158 (265)
T 2o23_A 79 LAKGKFGRVDVAVNCAGIAVASKTYNLKKGQTHTLEDFQRVLDVNLMGTFNVIRLVAGEMGQNEPDQGGQRGVIINTASV 158 (265)
T ss_dssp HHHHHHSCCCEEEECCCCCCCCCSEETTTTEECCHHHHHHHHHHHTHHHHHHHHHHHHHHTTSCCCTTSCCEEEEEECCT
T ss_pred HHHHHCCCCCEEEECCccCCCCccccccccCCCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcccccCCCCcEEEEeCCh
Confidence 7999999998743211 122 23567788777777776665411 13466766653
Q ss_pred hhhHHHHHHHHCCCCCCCcEEEeecccHHHHHHHHHHHcCCCCCCeee
Q 019990 134 ANTNALILKEFAPSIPAKNITCLTRLDHNRAMGQISERLKVHVSDVKN 181 (332)
Q Consensus 134 ~~~~~~~~~~~~~~~~~~~i~~~t~l~~~r~~~~~a~~~~v~~~~v~~ 181 (332)
... .+.+....|+.+|.....+...+++.+. +..|+.
T Consensus 159 ~~~---------~~~~~~~~Y~~sK~a~~~~~~~la~e~~--~~gi~v 195 (265)
T 2o23_A 159 AAF---------EGQVGQAAYSASKGGIVGMTLPIARDLA--PIGIRV 195 (265)
T ss_dssp HHH---------HCCTTCHHHHHHHHHHHHHHHHHHHHHG--GGTEEE
T ss_pred hhc---------CCCCCCchhHHHHHHHHHHHHHHHHHHh--hcCcEE
Confidence 221 1233344677788777777777777763 345654
|
| >3ai3_A NADPH-sorbose reductase; rossmann-fold, NADPH-dependent reductase, short chain dehydrogenase/reductase, oxidoreductase; HET: NAP SOL SOE; 1.80A {Gluconobacter frateurii} PDB: 3ai2_A* 3ai1_A* | Back alignment and structure |
|---|
Probab=98.89 E-value=2.2e-09 Score=95.25 Aligned_cols=150 Identities=13% Similarity=0.082 Sum_probs=90.5
Q ss_pred CCCcEEEEEcCCChhHHHHHHHHHhcccCCCCCCeEEEEEecccchhhhhhhHhhhhhh-c--c-CCccceEEeCCHHHH
Q 019990 3 KNPLRVLVTGAAGQIGYALVPMIARGIMLGPDQPVILHMLDIEPAAEALNGVKMELIDA-A--F-PLLKGVVATTDVVEA 78 (332)
Q Consensus 3 ~~~~kI~VtGaaG~IGs~l~~~L~~~~~~~~~~~~~i~l~D~~~~~~~~~~~~~dl~~~-~--~-~~~~~v~~~~~~~~a 78 (332)
.+.++|+||||+|+||++++..|++.|. +|+++|++. +.+.....++... . . ....|++...++.++
T Consensus 5 l~~k~vlVTGas~gIG~~ia~~l~~~G~-------~V~~~~r~~--~~~~~~~~~l~~~~~~~~~~~~~D~~~~~~~~~~ 75 (263)
T 3ai3_A 5 ISGKVAVITGSSSGIGLAIAEGFAKEGA-------HIVLVARQV--DRLHEAARSLKEKFGVRVLEVAVDVATPEGVDAV 75 (263)
T ss_dssp CTTCEEEEESCSSHHHHHHHHHHHHTTC-------EEEEEESCH--HHHHHHHHHHHHHHCCCEEEEECCTTSHHHHHHH
T ss_pred CCCCEEEEECCCchHHHHHHHHHHHCCC-------EEEEEcCCH--HHHHHHHHHHHHhcCCceEEEEcCCCCHHHHHHH
Confidence 3457899999999999999999999885 899999863 2333222233211 1 0 112344333334343
Q ss_pred hC-------CCcEEEEecCCCCCC---CCCh---hHHHhhhHHHHHHHHHHH----HhhcCCCcEEEEEeCChhhHHHHH
Q 019990 79 CK-------DVNIAVMVGGFPRKE---GMER---KDVMSKNVSIYKAQASAL----EKHAAPNCKVLVVANPANTNALIL 141 (332)
Q Consensus 79 ~~-------~aDiVi~~ag~~~~~---~~~~---~~~~~~N~~~~~~i~~~i----~~~~~~~~~viv~snp~~~~~~~~ 141 (332)
++ +.|++||.||..... ..+. ...+..|+.....+.+.+ ++.+ ..++|++|+....
T Consensus 76 ~~~~~~~~g~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~--~g~iv~isS~~~~----- 148 (263)
T 3ai3_A 76 VESVRSSFGGADILVNNAGTGSNETIMEAADEKWQFYWELLVMAAVRLARGLVPGMRARG--GGAIIHNASICAV----- 148 (263)
T ss_dssp HHHHHHHHSSCSEEEECCCCCCCCCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHT--CEEEEEECCGGGT-----
T ss_pred HHHHHHHcCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcC--CcEEEEECchhhc-----
Confidence 33 799999999974321 1222 234566776665555554 3332 3577777764321
Q ss_pred HHHCCCCCCCcEEEeecccHHHHHHHHHHHc
Q 019990 142 KEFAPSIPAKNITCLTRLDHNRAMGQISERL 172 (332)
Q Consensus 142 ~~~~~~~~~~~i~~~t~l~~~r~~~~~a~~~ 172 (332)
.+.+....|+.+|.....+.+.++..+
T Consensus 149 ----~~~~~~~~Y~~sK~a~~~~~~~la~e~ 175 (263)
T 3ai3_A 149 ----QPLWYEPIYNVTKAALMMFSKTLATEV 175 (263)
T ss_dssp ----SCCTTCHHHHHHHHHHHHHHHHHHHHH
T ss_pred ----CCCCCcchHHHHHHHHHHHHHHHHHHh
Confidence 123333467778887788888888775
|
| >2bgk_A Rhizome secoisolariciresinol dehydrogenase; oxidoreductase; 1.6A {Podophyllum peltatum} SCOP: c.2.1.2 PDB: 2bgl_A* 2bgm_A* | Back alignment and structure |
|---|
Probab=98.89 E-value=2.8e-09 Score=95.02 Aligned_cols=151 Identities=17% Similarity=0.076 Sum_probs=91.0
Q ss_pred CCcEEEEEcCCChhHHHHHHHHHhcccCCCCCCeEEEEEecccchhhhhhhHhhhhhh-c-cCCccceEEeCCHHHHhC-
Q 019990 4 NPLRVLVTGAAGQIGYALVPMIARGIMLGPDQPVILHMLDIEPAAEALNGVKMELIDA-A-FPLLKGVVATTDVVEACK- 80 (332)
Q Consensus 4 ~~~kI~VtGaaG~IGs~l~~~L~~~~~~~~~~~~~i~l~D~~~~~~~~~~~~~dl~~~-~-~~~~~~v~~~~~~~~a~~- 80 (332)
+.++|+||||+|+||++++..|++.|. +|+++|++. +.......++... . .....|++...++.++++
T Consensus 15 ~~k~vlITGasggiG~~~a~~l~~~G~-------~V~~~~r~~--~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~ 85 (278)
T 2bgk_A 15 QDKVAIITGGAGGIGETTAKLFVRYGA-------KVVIADIAD--DHGQKVCNNIGSPDVISFVHCDVTKDEDVRNLVDT 85 (278)
T ss_dssp TTCEEEEESTTSHHHHHHHHHHHHTTC-------EEEEEESCH--HHHHHHHHHHCCTTTEEEEECCTTCHHHHHHHHHH
T ss_pred cCCEEEEECCCCHHHHHHHHHHHHCCC-------EEEEEcCCh--hHHHHHHHHhCCCCceEEEECCCCCHHHHHHHHHH
Confidence 457899999999999999999999885 899998753 2222222222110 0 011234433333444443
Q ss_pred ------CCcEEEEecCCCCC-----CCCCh---hHHHhhhHHHHHHHHHHHHhhc--CCCcEEEEEeCChhhHHHHHHHH
Q 019990 81 ------DVNIAVMVGGFPRK-----EGMER---KDVMSKNVSIYKAQASALEKHA--APNCKVLVVANPANTNALILKEF 144 (332)
Q Consensus 81 ------~aDiVi~~ag~~~~-----~~~~~---~~~~~~N~~~~~~i~~~i~~~~--~~~~~viv~snp~~~~~~~~~~~ 144 (332)
+.|+|||.||.... ...+. ...+..|+.....+.+.+..+- ....++|++|+....
T Consensus 86 ~~~~~~~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~iv~isS~~~~-------- 157 (278)
T 2bgk_A 86 TIAKHGKLDIMFGNVGVLSTTPYSILEAGNEDFKRVMDINVYGAFLVAKHAARVMIPAKKGSIVFTASISSF-------- 157 (278)
T ss_dssp HHHHHSCCCEEEECCCCCCSSCSSTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHGGGTCEEEEEECCGGGT--------
T ss_pred HHHHcCCCCEEEECCcccCCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHhhcCCCeEEEEeecccc--------
Confidence 78999999986421 11121 2356778877777776665541 023577777754221
Q ss_pred CCCCC-CCcEEEeecccHHHHHHHHHHHc
Q 019990 145 APSIP-AKNITCLTRLDHNRAMGQISERL 172 (332)
Q Consensus 145 ~~~~~-~~~i~~~t~l~~~r~~~~~a~~~ 172 (332)
.+.+ +...|+.+|.....+...+++.+
T Consensus 158 -~~~~~~~~~Y~~sK~a~~~~~~~la~e~ 185 (278)
T 2bgk_A 158 -TAGEGVSHVYTATKHAVLGLTTSLCTEL 185 (278)
T ss_dssp -CCCTTSCHHHHHHHHHHHHHHHHHHHHH
T ss_pred -CCCCCCCcchHHHHHHHHHHHHHHHHHH
Confidence 1222 23357778887888887887765
|
| >2pnf_A 3-oxoacyl-[acyl-carrier-protein] reductase; short chain oxidoreductase, rossmann fold, oxidoreductase; HET: 1PE MES; 1.80A {Aquifex aeolicus} PDB: 2p68_A* | Back alignment and structure |
|---|
Probab=98.89 E-value=9.3e-10 Score=96.43 Aligned_cols=161 Identities=14% Similarity=0.105 Sum_probs=94.9
Q ss_pred CCcEEEEEcCCChhHHHHHHHHHhcccCCCCCCeEEEEEecccchhhhhhhHhhhhh-h--cc-CCccceEEeCCHHHHh
Q 019990 4 NPLRVLVTGAAGQIGYALVPMIARGIMLGPDQPVILHMLDIEPAAEALNGVKMELID-A--AF-PLLKGVVATTDVVEAC 79 (332)
Q Consensus 4 ~~~kI~VtGaaG~IGs~l~~~L~~~~~~~~~~~~~i~l~D~~~~~~~~~~~~~dl~~-~--~~-~~~~~v~~~~~~~~a~ 79 (332)
+.++|+||||+|+||++++..|++.|. +|++++++. +.+.....++.. . .. ....|+....++.+++
T Consensus 6 ~~~~vlVtGasggiG~~la~~l~~~G~-------~V~~~~r~~--~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~ 76 (248)
T 2pnf_A 6 QGKVSLVTGSTRGIGRAIAEKLASAGS-------TVIITGTSG--ERAKAVAEEIANKYGVKAHGVEMNLLSEESINKAF 76 (248)
T ss_dssp TTCEEEETTCSSHHHHHHHHHHHHTTC-------EEEEEESSH--HHHHHHHHHHHHHHCCCEEEEECCTTCHHHHHHHH
T ss_pred CCCEEEEECCCchHHHHHHHHHHHCCC-------EEEEEeCCh--HHHHHHHHHHHhhcCCceEEEEccCCCHHHHHHHH
Confidence 457899999999999999999999875 899999853 223222222221 0 01 1112443333444444
Q ss_pred C-------CCcEEEEecCCCCCC---CCCh---hHHHhhhHHHHHHHHH----HHHhhcCCCcEEEEEeCChhhHHHHHH
Q 019990 80 K-------DVNIAVMVGGFPRKE---GMER---KDVMSKNVSIYKAQAS----ALEKHAAPNCKVLVVANPANTNALILK 142 (332)
Q Consensus 80 ~-------~aDiVi~~ag~~~~~---~~~~---~~~~~~N~~~~~~i~~----~i~~~~~~~~~viv~snp~~~~~~~~~ 142 (332)
+ +.|+|||.||..... ..+. ...++.|+.....+.+ .+.+.. ..++|++|+....
T Consensus 77 ~~~~~~~~~~d~vi~~Ag~~~~~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~--~~~iv~~sS~~~~------ 148 (248)
T 2pnf_A 77 EEIYNLVDGIDILVNNAGITRDKLFLRMSLLDWEEVLKVNLTGTFLVTQNSLRKMIKQR--WGRIVNISSVVGF------ 148 (248)
T ss_dssp HHHHHHSSCCSEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHCHHHHHHT--CEEEEEECCHHHH------
T ss_pred HHHHHhcCCCCEEEECCCCCCCCccccCCHHHHHHHHhhhhHHHHHHHHHHHHHHHhcC--CcEEEEEccHHhc------
Confidence 3 799999999875321 1121 2456778777744444 444432 3577777753211
Q ss_pred HHCCCCCCCcEEEeecccHHHHHHHHHHHcCCCCCCeeeeEEEec
Q 019990 143 EFAPSIPAKNITCLTRLDHNRAMGQISERLKVHVSDVKNVIIWGN 187 (332)
Q Consensus 143 ~~~~~~~~~~i~~~t~l~~~r~~~~~a~~~~v~~~~v~~~~V~G~ 187 (332)
. +.+....|+.+|.....+...+++.+. +..++. +++.+
T Consensus 149 -~--~~~~~~~Y~~sK~a~~~~~~~la~e~~--~~~i~v-~~v~P 187 (248)
T 2pnf_A 149 -T--GNVGQVNYSTTKAGLIGFTKSLAKELA--PRNVLV-NAVAP 187 (248)
T ss_dssp -H--CCTTCHHHHHHHHHHHHHHHHHHHHHG--GGTEEE-EEEEE
T ss_pred -C--CCCCCchHHHHHHHHHHHHHHHHHHhc--ccCeEE-EEEEe
Confidence 1 223334567778777788888887764 334664 33443
|
| >3ius_A Uncharacterized conserved protein; APC63810, silicibacter pomeroyi DSS, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.66A {Ruegeria pomeroyi dss-3} | Back alignment and structure |
|---|
Probab=98.88 E-value=3.5e-09 Score=94.73 Aligned_cols=150 Identities=12% Similarity=0.037 Sum_probs=89.5
Q ss_pred CcEEEEEcCCChhHHHHHHHHHhcccCCCCCCeEEEEEecccchhhhhhhHhhhhhhcc-CCccceEEeCCHHHHhCCCc
Q 019990 5 PLRVLVTGAAGQIGYALVPMIARGIMLGPDQPVILHMLDIEPAAEALNGVKMELIDAAF-PLLKGVVATTDVVEACKDVN 83 (332)
Q Consensus 5 ~~kI~VtGaaG~IGs~l~~~L~~~~~~~~~~~~~i~l~D~~~~~~~~~~~~~dl~~~~~-~~~~~v~~~~~~~~a~~~aD 83 (332)
||||+|||| ||||++++..|++.++ +|+.++++.. ... .+..... ....|+. ++ + ++++|
T Consensus 5 ~~~ilVtGa-G~iG~~l~~~L~~~g~-------~V~~~~r~~~--~~~----~~~~~~~~~~~~D~~---d~-~-~~~~d 65 (286)
T 3ius_A 5 TGTLLSFGH-GYTARVLSRALAPQGW-------RIIGTSRNPD--QME----AIRASGAEPLLWPGE---EP-S-LDGVT 65 (286)
T ss_dssp CCEEEEETC-CHHHHHHHHHHGGGTC-------EEEEEESCGG--GHH----HHHHTTEEEEESSSS---CC-C-CTTCC
T ss_pred cCcEEEECC-cHHHHHHHHHHHHCCC-------EEEEEEcChh--hhh----hHhhCCCeEEEeccc---cc-c-cCCCC
Confidence 579999997 9999999999998875 8999988642 111 1111111 0112222 22 2 78999
Q ss_pred EEEEecCCCCCCCCChhHHHhhhHHHHHHHHHHHHhhcCCCcEEEEEeCChhhHHH----HHHHHCCCCCCCcEEEeecc
Q 019990 84 IAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEKHAAPNCKVLVVANPANTNAL----ILKEFAPSIPAKNITCLTRL 159 (332)
Q Consensus 84 iVi~~ag~~~~~~~~~~~~~~~N~~~~~~i~~~i~~~~~~~~~viv~snp~~~~~~----~~~~~~~~~~~~~i~~~t~l 159 (332)
+|||+|+..... ....+++++++++.+..-.++|++|+. .+... .+.+. ....|...|+.++.
T Consensus 66 ~vi~~a~~~~~~-----------~~~~~~l~~a~~~~~~~~~~~v~~Ss~-~vyg~~~~~~~~E~-~~~~p~~~Y~~sK~ 132 (286)
T 3ius_A 66 HLLISTAPDSGG-----------DPVLAALGDQIAARAAQFRWVGYLSTT-AVYGDHDGAWVDET-TPLTPTAARGRWRV 132 (286)
T ss_dssp EEEECCCCBTTB-----------CHHHHHHHHHHHHTGGGCSEEEEEEEG-GGGCCCTTCEECTT-SCCCCCSHHHHHHH
T ss_pred EEEECCCccccc-----------cHHHHHHHHHHHhhcCCceEEEEeecc-eecCCCCCCCcCCC-CCCCCCCHHHHHHH
Confidence 999999864321 112457777787742112366666642 11000 00111 12333445777777
Q ss_pred cHHHHHHHHHHHcCCCCCCeeeeEEEecCC
Q 019990 160 DHNRAMGQISERLKVHVSDVKNVIIWGNHS 189 (332)
Q Consensus 160 ~~~r~~~~~a~~~~v~~~~v~~~~V~G~hg 189 (332)
..+++...+ .+++...+|...|||+..
T Consensus 133 ~~E~~~~~~---~~~~~~ilRp~~v~G~~~ 159 (286)
T 3ius_A 133 MAEQQWQAV---PNLPLHVFRLAGIYGPGR 159 (286)
T ss_dssp HHHHHHHHS---TTCCEEEEEECEEEBTTB
T ss_pred HHHHHHHhh---cCCCEEEEeccceECCCc
Confidence 766655443 589999999999999754
|
| >2z1n_A Dehydrogenase; reductase, SDR, oxidoreductase; 1.80A {Aeropyrum pernix} | Back alignment and structure |
|---|
Probab=98.88 E-value=4.5e-09 Score=93.06 Aligned_cols=157 Identities=13% Similarity=0.116 Sum_probs=94.4
Q ss_pred CCCcEEEEEcCCChhHHHHHHHHHhcccCCCCCCeEEEEEecccchhhhhhhHhhhhhh----cc-CCccceEEeCCHHH
Q 019990 3 KNPLRVLVTGAAGQIGYALVPMIARGIMLGPDQPVILHMLDIEPAAEALNGVKMELIDA----AF-PLLKGVVATTDVVE 77 (332)
Q Consensus 3 ~~~~kI~VtGaaG~IGs~l~~~L~~~~~~~~~~~~~i~l~D~~~~~~~~~~~~~dl~~~----~~-~~~~~v~~~~~~~~ 77 (332)
.+.++|+||||+|+||++++..|++.|. +|+++|++. +.+.....++... .. ....|++...++.+
T Consensus 5 l~~k~vlVTGas~gIG~~ia~~l~~~G~-------~V~~~~r~~--~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~ 75 (260)
T 2z1n_A 5 IQGKLAVVTAGSSGLGFASALELARNGA-------RLLLFSRNR--EKLEAAASRIASLVSGAQVDIVAGDIREPGDIDR 75 (260)
T ss_dssp CTTCEEEEETTTSHHHHHHHHHHHHTTC-------EEEEEESCH--HHHHHHHHHHHHHSTTCCEEEEECCTTCHHHHHH
T ss_pred CCCCEEEEECCCchHHHHHHHHHHHCCC-------EEEEEeCCH--HHHHHHHHHHHhcCCCCeEEEEEccCCCHHHHHH
Confidence 3457899999999999999999999885 899999864 2333222233211 11 11234443334444
Q ss_pred HhC------CCcEEEEecCCCCCC---CCCh---hHHHhhhHHHH----HHHHHHHHhhcCCCcEEEEEeCChhhHHHHH
Q 019990 78 ACK------DVNIAVMVGGFPRKE---GMER---KDVMSKNVSIY----KAQASALEKHAAPNCKVLVVANPANTNALIL 141 (332)
Q Consensus 78 a~~------~aDiVi~~ag~~~~~---~~~~---~~~~~~N~~~~----~~i~~~i~~~~~~~~~viv~snp~~~~~~~~ 141 (332)
+++ +.|++||.||..... ..+. ...++.|+... +.+++.+.+.+ ..++|++|+....
T Consensus 76 ~~~~~~~~~gid~lv~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~--~g~iv~isS~~~~----- 148 (260)
T 2z1n_A 76 LFEKARDLGGADILVYSTGGPRPGRFMELGVEDWDESYRLLARSAVWVGRRAAEQMVEKG--WGRMVYIGSVTLL----- 148 (260)
T ss_dssp HHHHHHHTTCCSEEEECCCCCCCBCGGGCCHHHHHHHHHHTHHHHHHHHHHHHHHHHHHT--CEEEEEECCGGGT-----
T ss_pred HHHHHHHhcCCCEEEECCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcC--CcEEEEECchhhc-----
Confidence 443 599999999974321 1122 23567787766 44444554443 3577777764321
Q ss_pred HHHCCCCCCCcEEEeecccHHHHHHHHHHHcCCCCCCeee
Q 019990 142 KEFAPSIPAKNITCLTRLDHNRAMGQISERLKVHVSDVKN 181 (332)
Q Consensus 142 ~~~~~~~~~~~i~~~t~l~~~r~~~~~a~~~~v~~~~v~~ 181 (332)
.+.+....|+.+|.....+.+.+++.+. +..|+.
T Consensus 149 ----~~~~~~~~Y~~sK~a~~~~~~~la~e~~--~~gi~v 182 (260)
T 2z1n_A 149 ----RPWQDLALSNIMRLPVIGVVRTLALELA--PHGVTV 182 (260)
T ss_dssp ----SCCTTBHHHHHHTHHHHHHHHHHHHHHG--GGTEEE
T ss_pred ----CCCCCCchhHHHHHHHHHHHHHHHHHHh--hhCeEE
Confidence 1233334677788877788888887763 334553
|
| >3tzq_B Short-chain type dehydrogenase/reductase; ssgcid, structural genomics, seattle structural genomics CEN infectious disease, oxidoreductase; 2.50A {Mycobacterium marinum} SCOP: c.2.1.0 | Back alignment and structure |
|---|
Probab=98.88 E-value=3.1e-09 Score=94.89 Aligned_cols=156 Identities=12% Similarity=0.111 Sum_probs=97.0
Q ss_pred CCcEEEEEcCCChhHHHHHHHHHhcccCCCCCCeEEEEEecccchhhhhhhHhhhhhhccCCccceEEeCCHHHHhC---
Q 019990 4 NPLRVLVTGAAGQIGYALVPMIARGIMLGPDQPVILHMLDIEPAAEALNGVKMELIDAAFPLLKGVVATTDVVEACK--- 80 (332)
Q Consensus 4 ~~~kI~VtGaaG~IGs~l~~~L~~~~~~~~~~~~~i~l~D~~~~~~~~~~~~~dl~~~~~~~~~~v~~~~~~~~a~~--- 80 (332)
+.++++||||+|+||.+++..|++.|. +|++.|++. +.+.....++.........|++...++.++++
T Consensus 10 ~~k~vlVTGas~gIG~aia~~l~~~G~-------~V~~~~r~~--~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~ 80 (271)
T 3tzq_B 10 ENKVAIITGACGGIGLETSRVLARAGA-------RVVLADLPE--TDLAGAAASVGRGAVHHVVDLTNEVSVRALIDFTI 80 (271)
T ss_dssp TTCEEEEETTTSHHHHHHHHHHHHTTC-------EEEEEECTT--SCHHHHHHHHCTTCEEEECCTTCHHHHHHHHHHHH
T ss_pred CCCEEEEECCCcHHHHHHHHHHHHCCC-------EEEEEcCCH--HHHHHHHHHhCCCeEEEECCCCCHHHHHHHHHHHH
Confidence 457899999999999999999999885 899999864 23333322331111111234443333444333
Q ss_pred ----CCcEEEEecCCCCC-C----CCCh---hHHHhhhHHHHHHHHHHH----HhhcCCCcEEEEEeCChhhHHHHHHHH
Q 019990 81 ----DVNIAVMVGGFPRK-E----GMER---KDVMSKNVSIYKAQASAL----EKHAAPNCKVLVVANPANTNALILKEF 144 (332)
Q Consensus 81 ----~aDiVi~~ag~~~~-~----~~~~---~~~~~~N~~~~~~i~~~i----~~~~~~~~~viv~snp~~~~~~~~~~~ 144 (332)
..|++|+.||.... . ..+. ...++.|+.....+.+++ .+. ...++|++|+....
T Consensus 81 ~~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~m~~~--~~g~iv~isS~~~~-------- 150 (271)
T 3tzq_B 81 DTFGRLDIVDNNAAHSDPADMLVTQMTVDVWDDTFTVNARGTMLMCKYAIPRLISA--GGGAIVNISSATAH-------- 150 (271)
T ss_dssp HHHSCCCEEEECCCCCCTTCCCGGGCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHT--TCEEEEEECCGGGT--------
T ss_pred HHcCCCCEEEECCCCCCCCCCccccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhc--CCCEEEEECCHHHc--------
Confidence 78999999997522 1 1122 235677887777776666 443 34677777764321
Q ss_pred CCCCCCCcEEEeecccHHHHHHHHHHHcCCCCCCeee
Q 019990 145 APSIPAKNITCLTRLDHNRAMGQISERLKVHVSDVKN 181 (332)
Q Consensus 145 ~~~~~~~~i~~~t~l~~~r~~~~~a~~~~v~~~~v~~ 181 (332)
.+.+....|+.+|.....+.+.++..++ +..|+.
T Consensus 151 -~~~~~~~~Y~asKaa~~~l~~~la~e~~--~~gi~v 184 (271)
T 3tzq_B 151 -AAYDMSTAYACTKAAIETLTRYVATQYG--RHGVRC 184 (271)
T ss_dssp -SBCSSCHHHHHHHHHHHHHHHHHHHHHG--GGTEEE
T ss_pred -CCCCCChHHHHHHHHHHHHHHHHHHHHh--hcCEEE
Confidence 2234444678888888888888888854 334553
|
| >1hdo_A Biliverdin IX beta reductase; foetal metabolism, HAEM degradation, flavin reductase, diaphorase, green HAEM binding protein; HET: NAP; 1.15A {Homo sapiens} SCOP: c.2.1.2 PDB: 1he2_A* 1he3_A* 1he4_A* 1he5_A* | Back alignment and structure |
|---|
Probab=98.87 E-value=3.7e-09 Score=89.58 Aligned_cols=151 Identities=13% Similarity=0.120 Sum_probs=91.6
Q ss_pred cEEEEEcCCChhHHHHHHHHHhcccCCCCCCeEEEEEecccchhhhhhhHhhhhhhcc-CCccceEEeCCHHHHhCCCcE
Q 019990 6 LRVLVTGAAGQIGYALVPMIARGIMLGPDQPVILHMLDIEPAAEALNGVKMELIDAAF-PLLKGVVATTDVVEACKDVNI 84 (332)
Q Consensus 6 ~kI~VtGaaG~IGs~l~~~L~~~~~~~~~~~~~i~l~D~~~~~~~~~~~~~dl~~~~~-~~~~~v~~~~~~~~a~~~aDi 84 (332)
|+|+||||+|+||++++..|++.+. +|++++++.. .+. .+..... ....|+....++.++++++|+
T Consensus 4 ~~ilVtGatG~iG~~l~~~l~~~g~-------~V~~~~r~~~--~~~----~~~~~~~~~~~~D~~~~~~~~~~~~~~d~ 70 (206)
T 1hdo_A 4 KKIAIFGATGQTGLTTLAQAVQAGY-------EVTVLVRDSS--RLP----SEGPRPAHVVVGDVLQAADVDKTVAGQDA 70 (206)
T ss_dssp CEEEEESTTSHHHHHHHHHHHHTTC-------EEEEEESCGG--GSC----SSSCCCSEEEESCTTSHHHHHHHHTTCSE
T ss_pred CEEEEEcCCcHHHHHHHHHHHHCCC-------eEEEEEeChh--hcc----cccCCceEEEEecCCCHHHHHHHHcCCCE
Confidence 7899999999999999999998875 8999998642 111 0100000 112344434456677899999
Q ss_pred EEEecCCCCCCCCChhHHHhhhHHHHHHHHHHHHhhcCCCcEEEEEeCChhhHHHHHHHHCCCCC-CCcEEEeecccHHH
Q 019990 85 AVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEKHAAPNCKVLVVANPANTNALILKEFAPSIP-AKNITCLTRLDHNR 163 (332)
Q Consensus 85 Vi~~ag~~~~~~~~~~~~~~~N~~~~~~i~~~i~~~~~~~~~viv~snp~~~~~~~~~~~~~~~~-~~~i~~~t~l~~~r 163 (332)
|||++|..... . ....|.....++++++++.+ . .+++++|+. .. + ... ...+ +...|+.++...++
T Consensus 71 vi~~a~~~~~~-~----~~~~n~~~~~~~~~~~~~~~-~-~~~v~~Ss~-~~--~--~~~-~~~~~~~~~y~~~K~~~e~ 137 (206)
T 1hdo_A 71 VIVLLGTRNDL-S----PTTVMSEGARNIVAAMKAHG-V-DKVVACTSA-FL--L--WDP-TKVPPRLQAVTDDHIRMHK 137 (206)
T ss_dssp EEECCCCTTCC-S----CCCHHHHHHHHHHHHHHHHT-C-CEEEEECCG-GG--T--SCT-TCSCGGGHHHHHHHHHHHH
T ss_pred EEECccCCCCC-C----ccchHHHHHHHHHHHHHHhC-C-CeEEEEeee-ee--c--cCc-ccccccchhHHHHHHHHHH
Confidence 99999865321 1 12467888999999998874 2 366666653 11 0 000 1111 11234444444433
Q ss_pred HHHHHHHHcCCCCCCeeeeEEEec
Q 019990 164 AMGQISERLKVHVSDVKNVIIWGN 187 (332)
Q Consensus 164 ~~~~~a~~~~v~~~~v~~~~V~G~ 187 (332)
+ .+..+++...+|+..+ |+
T Consensus 138 ~----~~~~~i~~~~lrp~~~-~~ 156 (206)
T 1hdo_A 138 V----LRESGLKYVAVMPPHI-GD 156 (206)
T ss_dssp H----HHHTCSEEEEECCSEE-EC
T ss_pred H----HHhCCCCEEEEeCCcc-cC
Confidence 3 2456888777887653 53
|
| >2ehd_A Oxidoreductase, oxidoreductase, short-chain dehydrogenase/reducta; rossman fold, structural genomics, NPPSFA; 2.40A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=98.87 E-value=2.1e-09 Score=93.46 Aligned_cols=158 Identities=18% Similarity=0.168 Sum_probs=90.2
Q ss_pred CCCCCcEEEEEcCCChhHHHHHHHHHhcccCCCCCCeEEEEEecccchhhhhhhHhhhhhhccCCccceEEeCCHHHHh-
Q 019990 1 MAKNPLRVLVTGAAGQIGYALVPMIARGIMLGPDQPVILHMLDIEPAAEALNGVKMELIDAAFPLLKGVVATTDVVEAC- 79 (332)
Q Consensus 1 m~~~~~kI~VtGaaG~IGs~l~~~L~~~~~~~~~~~~~i~l~D~~~~~~~~~~~~~dl~~~~~~~~~~v~~~~~~~~a~- 79 (332)
|+...++|+||||+|+||++++..|++.|. +|++++++. +.+.....++... .....|+....++.+++
T Consensus 1 M~~~~k~vlVtGasggiG~~~a~~l~~~G~-------~V~~~~r~~--~~~~~~~~~~~~~-~~~~~D~~~~~~~~~~~~ 70 (234)
T 2ehd_A 1 MEGMKGAVLITGASRGIGEATARLLHAKGY-------RVGLMARDE--KRLQALAAELEGA-LPLPGDVREEGDWARAVA 70 (234)
T ss_dssp ---CCCEEEESSTTSHHHHHHHHHHHHTTC-------EEEEEESCH--HHHHHHHHHSTTC-EEEECCTTCHHHHHHHHH
T ss_pred CCCCCCEEEEECCCcHHHHHHHHHHHHCCC-------EEEEEECCH--HHHHHHHHHhhhc-eEEEecCCCHHHHHHHHH
Confidence 666667899999999999999999999885 899999853 2232222222111 01112333333333333
Q ss_pred ------CCCcEEEEecCCCCCC---CCCh---hHHHhhhHHHHH----HHHHHHHhhcCCCcEEEEEeCChhhHHHHHHH
Q 019990 80 ------KDVNIAVMVGGFPRKE---GMER---KDVMSKNVSIYK----AQASALEKHAAPNCKVLVVANPANTNALILKE 143 (332)
Q Consensus 80 ------~~aDiVi~~ag~~~~~---~~~~---~~~~~~N~~~~~----~i~~~i~~~~~~~~~viv~snp~~~~~~~~~~ 143 (332)
.+.|+|||.||..... ..+. ...++.|+.... .+++.+++. ...++|++|+....
T Consensus 71 ~~~~~~~~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~N~~~~~~~~~~~~~~~~~~--~~~~iv~isS~~~~------- 141 (234)
T 2ehd_A 71 AMEEAFGELSALVNNAGVGVMKPVHELTLEEWRLVLDTNLTGAFLGIRHAVPALLRR--GGGTIVNVGSLAGK------- 141 (234)
T ss_dssp HHHHHHSCCCEEEECCCCCCCSCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHTT--TCEEEEEECCTTTT-------
T ss_pred HHHHHcCCCCEEEECCCcCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhC--CCcEEEEECCchhc-------
Confidence 3789999999874321 1122 235667776654 444444443 24577777764221
Q ss_pred HCCCCCCCcEEEeecccHHHHHHHHHHHcCCCCCCeee
Q 019990 144 FAPSIPAKNITCLTRLDHNRAMGQISERLKVHVSDVKN 181 (332)
Q Consensus 144 ~~~~~~~~~i~~~t~l~~~r~~~~~a~~~~v~~~~v~~ 181 (332)
.+.+....|+.+|.....+...++..+. +..++.
T Consensus 142 --~~~~~~~~Y~~sK~a~~~~~~~la~e~~--~~gi~v 175 (234)
T 2ehd_A 142 --NPFKGGAAYNASKFGLLGLAGAAMLDLR--EANVRV 175 (234)
T ss_dssp --SCCTTCHHHHHHHHHHHHHHHHHHHHHG--GGTEEE
T ss_pred --CCCCCCchhhHHHHHHHHHHHHHHHHHh--hcCcEE
Confidence 1233334567777777777777777654 334553
|
| >2hq1_A Glucose/ribitol dehydrogenase; CTH-1438, structural genomics, southeast collaboratory for structural genomics, secsg, PSI; 1.90A {Clostridium thermocellum} | Back alignment and structure |
|---|
Probab=98.87 E-value=3.8e-09 Score=92.47 Aligned_cols=166 Identities=15% Similarity=0.115 Sum_probs=92.4
Q ss_pred CCCCCcEEEEEcCCChhHHHHHHHHHhcccCCCCCCeEEEEEe-cccchhhhhhhHhhhhhhc--c-CCccceEEeCCHH
Q 019990 1 MAKNPLRVLVTGAAGQIGYALVPMIARGIMLGPDQPVILHMLD-IEPAAEALNGVKMELIDAA--F-PLLKGVVATTDVV 76 (332)
Q Consensus 1 m~~~~~kI~VtGaaG~IGs~l~~~L~~~~~~~~~~~~~i~l~D-~~~~~~~~~~~~~dl~~~~--~-~~~~~v~~~~~~~ 76 (332)
|+.+.++|+||||+|+||++++..|++.|. +|++++ ++. +.+.....++.... . ....|++...++.
T Consensus 1 M~l~~~~vlItGasggiG~~~a~~l~~~G~-------~V~~~~~r~~--~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~ 71 (247)
T 2hq1_A 1 MQLKGKTAIVTGSSRGLGKAIAWKLGNMGA-------NIVLNGSPAS--TSLDATAEEFKAAGINVVVAKGDVKNPEDVE 71 (247)
T ss_dssp CTTTTCEEEESSCSSHHHHHHHHHHHHTTC-------EEEEEECTTC--SHHHHHHHHHHHTTCCEEEEESCTTSHHHHH
T ss_pred CCCCCcEEEEECCCchHHHHHHHHHHHCCC-------EEEEEcCcCH--HHHHHHHHHHHhcCCcEEEEECCCCCHHHHH
Confidence 766778999999999999999999999885 788884 432 12222222222111 0 1123443333333
Q ss_pred HHhC-------CCcEEEEecCCCCC------CCCChhHHHhhhHHHHHHHHHHHHhhc--CCCcEEEEEeCChhhHHHHH
Q 019990 77 EACK-------DVNIAVMVGGFPRK------EGMERKDVMSKNVSIYKAQASALEKHA--APNCKVLVVANPANTNALIL 141 (332)
Q Consensus 77 ~a~~-------~aDiVi~~ag~~~~------~~~~~~~~~~~N~~~~~~i~~~i~~~~--~~~~~viv~snp~~~~~~~~ 141 (332)
++++ +.|+|||.||.... ........+..|+.....+.+.+..+. ....++|++|+....
T Consensus 72 ~~~~~~~~~~~~~d~vi~~Ag~~~~~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~~~~iv~~sS~~~~----- 146 (247)
T 2hq1_A 72 NMVKTAMDAFGRIDILVNNAGITRDTLMLKMSEKDWDDVLNTNLKSAYLCTKAVSKIMLKQKSGKIINITSIAGI----- 146 (247)
T ss_dssp HHHHHHHHHHSCCCEEEECC---------------CHHHHHHTHHHHHHHHHHHHHHHHHHTCEEEEEECC---------
T ss_pred HHHHHHHHhcCCCCEEEECCCCCCCCccccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCcEEEEEcChhhc-----
Confidence 3333 78999999987431 111223467788877666555554321 023577777764221
Q ss_pred HHHCCCCCCCcEEEeecccHHHHHHHHHHHcCCCCCCeeeeEEEec
Q 019990 142 KEFAPSIPAKNITCLTRLDHNRAMGQISERLKVHVSDVKNVIIWGN 187 (332)
Q Consensus 142 ~~~~~~~~~~~i~~~t~l~~~r~~~~~a~~~~v~~~~v~~~~V~G~ 187 (332)
.+.+....|+.+|.....+...+++.++ +..++. +++.+
T Consensus 147 ----~~~~~~~~Y~~sK~a~~~~~~~la~e~~--~~gi~v-~~v~P 185 (247)
T 2hq1_A 147 ----IGNAGQANYAASKAGLIGFTKSIAKEFA--AKGIYC-NAVAP 185 (247)
T ss_dssp ---------CHHHHHHHHHHHHHHHHHHHHHG--GGTEEE-EEEEE
T ss_pred ----cCCCCCcHhHHHHHHHHHHHHHHHHHHH--HcCcEE-EEEEE
Confidence 1123334567788878888888888764 334663 44554
|
| >3i6i_A Putative leucoanthocyanidin reductase 1; rossmann fold, short chain dehydrogenase reductase, flavonoi oxidoreductase; HET: NDP; 1.75A {Vitis vinifera} PDB: 3i5m_A 3i52_A* 3i6q_A* | Back alignment and structure |
|---|
Probab=98.87 E-value=1.1e-09 Score=101.10 Aligned_cols=150 Identities=14% Similarity=0.045 Sum_probs=90.8
Q ss_pred CcEEEEEcCCChhHHHHHHHHHhcccCCCCCCeEEEEEecccch--hhhhhhHhhhhhhcc-CCccceEEeCCHHHHhC-
Q 019990 5 PLRVLVTGAAGQIGYALVPMIARGIMLGPDQPVILHMLDIEPAA--EALNGVKMELIDAAF-PLLKGVVATTDVVEACK- 80 (332)
Q Consensus 5 ~~kI~VtGaaG~IGs~l~~~L~~~~~~~~~~~~~i~l~D~~~~~--~~~~~~~~dl~~~~~-~~~~~v~~~~~~~~a~~- 80 (332)
+++|+||||+|++|++++..|++.+. +|++++++... ++.. ....+..... ....|+....++.++++
T Consensus 10 ~~~IlVtGatG~iG~~l~~~L~~~g~-------~V~~l~R~~~~~~~~~~-~~~~l~~~~v~~~~~Dl~d~~~l~~~~~~ 81 (346)
T 3i6i_A 10 KGRVLIAGATGFIGQFVATASLDAHR-------PTYILARPGPRSPSKAK-IFKALEDKGAIIVYGLINEQEAMEKILKE 81 (346)
T ss_dssp -CCEEEECTTSHHHHHHHHHHHHTTC-------CEEEEECSSCCCHHHHH-HHHHHHHTTCEEEECCTTCHHHHHHHHHH
T ss_pred CCeEEEECCCcHHHHHHHHHHHHCCC-------CEEEEECCCCCChhHHH-HHHHHHhCCcEEEEeecCCHHHHHHHHhh
Confidence 46899999999999999999998875 78888885411 1111 1112221111 11245544556777888
Q ss_pred -CCcEEEEecCCCCCCCCChhHHHhhhHHHHHHHHHHHHhhcCCCcEEEEEeCC-hhhHHHHHHHHCCCCCCCcEEEeec
Q 019990 81 -DVNIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEKHAAPNCKVLVVANP-ANTNALILKEFAPSIPAKNITCLTR 158 (332)
Q Consensus 81 -~aDiVi~~ag~~~~~~~~~~~~~~~N~~~~~~i~~~i~~~~~~~~~viv~snp-~~~~~~~~~~~~~~~~~~~i~~~t~ 158 (332)
++|+|||+++.. |+....++++++++.+ .++.++.|.- .+. .+ ....++...++.++
T Consensus 82 ~~~d~Vi~~a~~~-------------n~~~~~~l~~aa~~~g--~v~~~v~S~~g~~~-----~e-~~~~~p~~~y~~sK 140 (346)
T 3i6i_A 82 HEIDIVVSTVGGE-------------SILDQIALVKAMKAVG--TIKRFLPSEFGHDV-----NR-ADPVEPGLNMYREK 140 (346)
T ss_dssp TTCCEEEECCCGG-------------GGGGHHHHHHHHHHHC--CCSEEECSCCSSCT-----TT-CCCCTTHHHHHHHH
T ss_pred CCCCEEEECCchh-------------hHHHHHHHHHHHHHcC--CceEEeecccCCCC-----Cc-cCcCCCcchHHHHH
Confidence 999999998752 5666788999999875 2333443421 110 01 01223333445555
Q ss_pred ccHHHHHHHHHHHcCCCCCCeeeeEEEec
Q 019990 159 LDHNRAMGQISERLKVHVSDVKNVIIWGN 187 (332)
Q Consensus 159 l~~~r~~~~~a~~~~v~~~~v~~~~V~G~ 187 (332)
...+++ .+..|++...+|+-.++|.
T Consensus 141 ~~~e~~----l~~~g~~~tivrpg~~~g~ 165 (346)
T 3i6i_A 141 RRVRQL----VEESGIPFTYICCNSIASW 165 (346)
T ss_dssp HHHHHH----HHHTTCCBEEEECCEESSC
T ss_pred HHHHHH----HHHcCCCEEEEEecccccc
Confidence 544443 3457899888987766664
|
| >1w6u_A 2,4-dienoyl-COA reductase, mitochondrial precursor; short chain dehydrogenase, beta- oxidation, NADP, oxidoreductase; HET: HXC NAP; 1.75A {Homo sapiens} SCOP: c.2.1.2 PDB: 1w73_A* 1w8d_A* | Back alignment and structure |
|---|
Probab=98.87 E-value=2.1e-09 Score=97.24 Aligned_cols=151 Identities=7% Similarity=0.004 Sum_probs=91.7
Q ss_pred CCcEEEEEcCCChhHHHHHHHHHhcccCCCCCCeEEEEEecccchhhhhhhHhhhhhh-c--c-CCccceEEeCCHHHHh
Q 019990 4 NPLRVLVTGAAGQIGYALVPMIARGIMLGPDQPVILHMLDIEPAAEALNGVKMELIDA-A--F-PLLKGVVATTDVVEAC 79 (332)
Q Consensus 4 ~~~kI~VtGaaG~IGs~l~~~L~~~~~~~~~~~~~i~l~D~~~~~~~~~~~~~dl~~~-~--~-~~~~~v~~~~~~~~a~ 79 (332)
+.++|+||||+|+||++++..|++.|. +|+++|++. +.+.....++... . . ....|++...++.+++
T Consensus 25 ~~k~vlITGasggiG~~la~~L~~~G~-------~V~~~~r~~--~~~~~~~~~l~~~~~~~~~~~~~Dl~~~~~~~~~~ 95 (302)
T 1w6u_A 25 QGKVAFITGGGTGLGKGMTTLLSSLGA-------QCVIASRKM--DVLKATAEQISSQTGNKVHAIQCDVRDPDMVQNTV 95 (302)
T ss_dssp TTCEEEEETTTSHHHHHHHHHHHHTTC-------EEEEEESCH--HHHHHHHHHHHHHHSSCEEEEECCTTCHHHHHHHH
T ss_pred CCCEEEEECCCchHHHHHHHHHHHCCC-------EEEEEeCCH--HHHHHHHHHHHHhcCCceEEEEeCCCCHHHHHHHH
Confidence 347899999999999999999999885 899999864 2333222333211 0 1 1123443333333333
Q ss_pred C-------CCcEEEEecCCCCCC---CCCh---hHHHhhhHHHHHHHHHHHHhhc---CCCcEEEEEeCChhhHHHHHHH
Q 019990 80 K-------DVNIAVMVGGFPRKE---GMER---KDVMSKNVSIYKAQASALEKHA---APNCKVLVVANPANTNALILKE 143 (332)
Q Consensus 80 ~-------~aDiVi~~ag~~~~~---~~~~---~~~~~~N~~~~~~i~~~i~~~~---~~~~~viv~snp~~~~~~~~~~ 143 (332)
+ ..|+|||.||..... ..+. ...+..|+.....+.+.+..+. ....++|++|+... .
T Consensus 96 ~~~~~~~g~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~~~~~iv~isS~~~---~---- 168 (302)
T 1w6u_A 96 SELIKVAGHPNIVINNAAGNFISPTERLSPNAWKTITDIVLNGTAFVTLEIGKQLIKAQKGAAFLSITTIYA---E---- 168 (302)
T ss_dssp HHHHHHTCSCSEEEECCCCCCCSCGGGCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCEEEEEECCTHH---H----
T ss_pred HHHHHHcCCCCEEEECCCCCCCCccccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHhcCCCEEEEEccccc---c----
Confidence 3 469999999964321 1121 2356778877766666654431 12356777765321 1
Q ss_pred HCCCCCCCcEEEeecccHHHHHHHHHHHc
Q 019990 144 FAPSIPAKNITCLTRLDHNRAMGQISERL 172 (332)
Q Consensus 144 ~~~~~~~~~i~~~t~l~~~r~~~~~a~~~ 172 (332)
.+.++...|+.+|.....+...+++.+
T Consensus 169 --~~~~~~~~Y~~sK~a~~~~~~~la~~~ 195 (302)
T 1w6u_A 169 --TGSGFVVPSASAKAGVEAMSKSLAAEW 195 (302)
T ss_dssp --HCCTTCHHHHHHHHHHHHHHHHHHHHH
T ss_pred --cCCCCcchhHHHHHHHHHHHHHHHHHh
Confidence 123444467888888888888888774
|
| >3r6d_A NAD-dependent epimerase/dehydratase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, veillo parvula; HET: MLZ; 1.25A {Veillonella parvula dsm 2008} PDB: 4hng_A 4hnh_A* 3r14_A* | Back alignment and structure |
|---|
Probab=98.85 E-value=7.4e-09 Score=89.18 Aligned_cols=101 Identities=13% Similarity=0.090 Sum_probs=67.2
Q ss_pred cEEEEEcCCChhHHHHHHHHH-hcccCCCCCCeEEEEEecccchhhhhhhHhhhhhhc-cCCccceEEeCCHHHHhCCCc
Q 019990 6 LRVLVTGAAGQIGYALVPMIA-RGIMLGPDQPVILHMLDIEPAAEALNGVKMELIDAA-FPLLKGVVATTDVVEACKDVN 83 (332)
Q Consensus 6 ~kI~VtGaaG~IGs~l~~~L~-~~~~~~~~~~~~i~l~D~~~~~~~~~~~~~dl~~~~-~~~~~~v~~~~~~~~a~~~aD 83 (332)
++|+||||+|+||++++..|+ +.+. +|++++++.. +.+..... .... .....|+....++.++++++|
T Consensus 6 k~vlVtGasg~iG~~~~~~l~~~~g~-------~V~~~~r~~~-~~~~~~~~--~~~~~~~~~~D~~d~~~~~~~~~~~d 75 (221)
T 3r6d_A 6 XYITILGAAGQIAQXLTATLLTYTDM-------HITLYGRQLK-TRIPPEII--DHERVTVIEGSFQNPGXLEQAVTNAE 75 (221)
T ss_dssp SEEEEESTTSHHHHHHHHHHHHHCCC-------EEEEEESSHH-HHSCHHHH--TSTTEEEEECCTTCHHHHHHHHTTCS
T ss_pred EEEEEEeCCcHHHHHHHHHHHhcCCc-------eEEEEecCcc-ccchhhcc--CCCceEEEECCCCCHHHHHHHHcCCC
Confidence 349999999999999999999 7775 8999998531 02221110 1111 111235554556677889999
Q ss_pred EEEEecCCCCCCCCChhHHHhhhHHHHHHHHHHHHhhcCCCcEEEEEeC
Q 019990 84 IAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEKHAAPNCKVLVVAN 132 (332)
Q Consensus 84 iVi~~ag~~~~~~~~~~~~~~~N~~~~~~i~~~i~~~~~~~~~viv~sn 132 (332)
+||+++|.. |.. .+.+++.+++.+ . .++|++|+
T Consensus 76 ~vv~~ag~~-------------n~~-~~~~~~~~~~~~-~-~~iv~iSs 108 (221)
T 3r6d_A 76 VVFVGAMES-------------GSD-MASIVKALSRXN-I-RRVIGVSM 108 (221)
T ss_dssp EEEESCCCC-------------HHH-HHHHHHHHHHTT-C-CEEEEEEE
T ss_pred EEEEcCCCC-------------Chh-HHHHHHHHHhcC-C-CeEEEEee
Confidence 999999743 334 788888888764 2 36666664
|
| >3osu_A 3-oxoacyl-[acyl-carrier-protein] reductase; structural genomics, csgid, center for structural genomics O infectious diseases; 1.90A {Staphylococcus aureus subsp} SCOP: c.2.1.0 PDB: 3sj7_A* | Back alignment and structure |
|---|
Probab=98.84 E-value=5e-09 Score=92.04 Aligned_cols=162 Identities=15% Similarity=0.129 Sum_probs=99.3
Q ss_pred CCcEEEEEcCCChhHHHHHHHHHhcccCCCCCCeEEEEEecccchhhhhhhHhhhhhhcc---CCccceEEeCCHHHHhC
Q 019990 4 NPLRVLVTGAAGQIGYALVPMIARGIMLGPDQPVILHMLDIEPAAEALNGVKMELIDAAF---PLLKGVVATTDVVEACK 80 (332)
Q Consensus 4 ~~~kI~VtGaaG~IGs~l~~~L~~~~~~~~~~~~~i~l~D~~~~~~~~~~~~~dl~~~~~---~~~~~v~~~~~~~~a~~ 80 (332)
+.++++||||+|+||++++..|++.|. ++++.|.+.. +.+.....++..... ....|++...++.++++
T Consensus 3 ~~k~~lVTGas~gIG~~ia~~l~~~G~-------~V~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~Dv~d~~~v~~~~~ 74 (246)
T 3osu_A 3 MTKSALVTGASRGIGRSIALQLAEEGY-------NVAVNYAGSK-EKAEAVVEEIKAKGVDSFAIQANVADADEVKAMIK 74 (246)
T ss_dssp CSCEEEETTCSSHHHHHHHHHHHHTTC-------EEEEEESSCH-HHHHHHHHHHHHTTSCEEEEECCTTCHHHHHHHHH
T ss_pred CCCEEEEECCCChHHHHHHHHHHHCCC-------EEEEEeCCCH-HHHHHHHHHHHhcCCcEEEEEccCCCHHHHHHHHH
Confidence 456899999999999999999999886 7888876432 233333333332111 11234443333443333
Q ss_pred -------CCcEEEEecCCCCCC---CCChh---HHHhhhHHHHHHHHHHH----HhhcCCCcEEEEEeCChhhHHHHHHH
Q 019990 81 -------DVNIAVMVGGFPRKE---GMERK---DVMSKNVSIYKAQASAL----EKHAAPNCKVLVVANPANTNALILKE 143 (332)
Q Consensus 81 -------~aDiVi~~ag~~~~~---~~~~~---~~~~~N~~~~~~i~~~i----~~~~~~~~~viv~snp~~~~~~~~~~ 143 (332)
..|++||.||..... ..+.+ ..++.|+.....+.+++ .+. ...++|++|+....
T Consensus 75 ~~~~~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~~~~~~~~--~~g~iv~isS~~~~------- 145 (246)
T 3osu_A 75 EVVSQFGSLDVLVNNAGITRDNLLMRMKEQEWDDVIDTNLKGVFNCIQKATPQMLRQ--RSGAIINLSSVVGA------- 145 (246)
T ss_dssp HHHHHHSCCCEEEECCCCCCCCCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHH--TCEEEEEECCHHHH-------
T ss_pred HHHHHcCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHc--CCCEEEEEcchhhc-------
Confidence 789999999975321 12222 35677887776666666 443 24577777753211
Q ss_pred HCCCCCCCcEEEeecccHHHHHHHHHHHcCCCCCCeeeeEEEec
Q 019990 144 FAPSIPAKNITCLTRLDHNRAMGQISERLKVHVSDVKNVIIWGN 187 (332)
Q Consensus 144 ~~~~~~~~~i~~~t~l~~~r~~~~~a~~~~v~~~~v~~~~V~G~ 187 (332)
.+.++...|+.+|.....+.+.+++.++ +..|+. +.+.+
T Consensus 146 --~~~~~~~~Y~~sK~a~~~~~~~la~e~~--~~gi~v-n~v~P 184 (246)
T 3osu_A 146 --VGNPGQANYVATKAGVIGLTKSAARELA--SRGITV-NAVAP 184 (246)
T ss_dssp --HCCTTCHHHHHHHHHHHHHHHHHHHHHG--GGTEEE-EEEEE
T ss_pred --CCCCCChHHHHHHHHHHHHHHHHHHHhc--ccCeEE-EEEEE
Confidence 1234445678888888888888888765 345664 33443
|
| >3r3s_A Oxidoreductase; structural genomics, csgid, center for structural genomics O infectious diseases, 3-layer(ABA) sandwich, rossmann fold; HET: NAD; 1.25A {Salmonella enterica subsp} | Back alignment and structure |
|---|
Probab=98.83 E-value=7.5e-09 Score=93.51 Aligned_cols=153 Identities=13% Similarity=0.059 Sum_probs=96.9
Q ss_pred CCcEEEEEcCCChhHHHHHHHHHhcccCCCCCCeEEEEEecccchhhhhhhHhhhhhhc---cCCccceEEeCCHHHH--
Q 019990 4 NPLRVLVTGAAGQIGYALVPMIARGIMLGPDQPVILHMLDIEPAAEALNGVKMELIDAA---FPLLKGVVATTDVVEA-- 78 (332)
Q Consensus 4 ~~~kI~VtGaaG~IGs~l~~~L~~~~~~~~~~~~~i~l~D~~~~~~~~~~~~~dl~~~~---~~~~~~v~~~~~~~~a-- 78 (332)
+.++++||||+|+||.+++..|++.|. +|++.|++...+.+......+.... .....|++...++.++
T Consensus 48 ~~k~vlVTGas~GIG~aia~~la~~G~-------~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~d~~~v~~~~~ 120 (294)
T 3r3s_A 48 KDRKALVTGGDSGIGRAAAIAYAREGA-------DVAINYLPAEEEDAQQVKALIEECGRKAVLLPGDLSDESFARSLVH 120 (294)
T ss_dssp TTCEEEEETTTSHHHHHHHHHHHHTTC-------EEEEECCGGGHHHHHHHHHHHHHTTCCEEECCCCTTSHHHHHHHHH
T ss_pred CCCEEEEeCCCcHHHHHHHHHHHHCCC-------EEEEEeCCcchhHHHHHHHHHHHcCCcEEEEEecCCCHHHHHHHHH
Confidence 346899999999999999999999886 8899887532222222222222211 1112344433333332
Q ss_pred -----hCCCcEEEEecCCCCCC----CCCh---hHHHhhhHHHHHHHHHHHHhhcCCCcEEEEEeCChhhHHHHHHHHCC
Q 019990 79 -----CKDVNIAVMVGGFPRKE----GMER---KDVMSKNVSIYKAQASALEKHAAPNCKVLVVANPANTNALILKEFAP 146 (332)
Q Consensus 79 -----~~~aDiVi~~ag~~~~~----~~~~---~~~~~~N~~~~~~i~~~i~~~~~~~~~viv~snp~~~~~~~~~~~~~ 146 (332)
+...|++|+.||..... ..+. ...++.|+.....+.+++...-.+.+++|++|+.... .
T Consensus 121 ~~~~~~g~iD~lv~nAg~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~g~Iv~isS~~~~---------~ 191 (294)
T 3r3s_A 121 KAREALGGLDILALVAGKQTAIPEIKDLTSEQFQQTFAVNVFALFWITQEAIPLLPKGASIITTSSIQAY---------Q 191 (294)
T ss_dssp HHHHHHTCCCEEEECCCCCCCCSSGGGCCHHHHHHHHHHHTHHHHHHHHHHGGGCCTTCEEEEECCGGGT---------S
T ss_pred HHHHHcCCCCEEEECCCCcCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHhhcCCEEEEECChhhc---------c
Confidence 34789999999974321 1222 2357789988888888887765344677777763321 2
Q ss_pred CCCCCcEEEeecccHHHHHHHHHHHc
Q 019990 147 SIPAKNITCLTRLDHNRAMGQISERL 172 (332)
Q Consensus 147 ~~~~~~i~~~t~l~~~r~~~~~a~~~ 172 (332)
+.+....|+.+|.....+.+.+++.+
T Consensus 192 ~~~~~~~Y~asKaa~~~l~~~la~e~ 217 (294)
T 3r3s_A 192 PSPHLLDYAATKAAILNYSRGLAKQV 217 (294)
T ss_dssp CCTTCHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCchHHHHHHHHHHHHHHHHHHHH
Confidence 23334467888888888888888887
|
| >2ph3_A 3-oxoacyl-[acyl carrier protein] reductase; TTHA0415, structural genomics, southea collaboratory for structural genomics, secsg; 1.91A {Thermus thermophilus HB8} | Back alignment and structure |
|---|
Probab=98.83 E-value=2.2e-09 Score=93.79 Aligned_cols=155 Identities=14% Similarity=0.147 Sum_probs=90.7
Q ss_pred CcEEEEEcCCChhHHHHHHHHHhcccCCCCCCeEEEEE-ecccchhhhhhhHhhhhhhc---cC-CccceEEeCCHHHH-
Q 019990 5 PLRVLVTGAAGQIGYALVPMIARGIMLGPDQPVILHML-DIEPAAEALNGVKMELIDAA---FP-LLKGVVATTDVVEA- 78 (332)
Q Consensus 5 ~~kI~VtGaaG~IGs~l~~~L~~~~~~~~~~~~~i~l~-D~~~~~~~~~~~~~dl~~~~---~~-~~~~v~~~~~~~~a- 78 (332)
+++|+||||+|+||++++..|++.|. +|+++ +++. +.+.....++.... .. ...|+....++.++
T Consensus 1 ~k~vlITGasggiG~~~a~~l~~~G~-------~v~~~~~r~~--~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~ 71 (245)
T 2ph3_A 1 MRKALITGASRGIGRAIALRLAEDGF-------ALAIHYGQNR--EKAEEVAEEARRRGSPLVAVLGANLLEAEAATALV 71 (245)
T ss_dssp CCEEEETTTTSHHHHHHHHHHHTTTC-------EEEEEESSCH--HHHHHHHHHHHHTTCSCEEEEECCTTSHHHHHHHH
T ss_pred CCEEEEeCCCchHHHHHHHHHHHCCC-------EEEEEcCCCH--HHHHHHHHHHHhcCCceEEEEeccCCCHHHHHHHH
Confidence 35899999999999999999999875 78887 6542 22322222222111 01 11233322233333
Q ss_pred ------hCCCcEEEEecCCCCCC---CCCh---hHHHhhhHHH----HHHHHHHHHhhcCCCcEEEEEeCChhhHHHHHH
Q 019990 79 ------CKDVNIAVMVGGFPRKE---GMER---KDVMSKNVSI----YKAQASALEKHAAPNCKVLVVANPANTNALILK 142 (332)
Q Consensus 79 ------~~~aDiVi~~ag~~~~~---~~~~---~~~~~~N~~~----~~~i~~~i~~~~~~~~~viv~snp~~~~~~~~~ 142 (332)
+.+.|+|||.||..... ..+. ...++.|+.. ++.+++.+++.. ..++|++|+....
T Consensus 72 ~~~~~~~~~~d~li~~Ag~~~~~~~~~~~~~~~~~~~~~n~~g~~~l~~~~~~~~~~~~--~~~iv~~sS~~~~------ 143 (245)
T 2ph3_A 72 HQAAEVLGGLDTLVNNAGITRDTLLVRMKDEDWEAVLEANLSAVFRTTREAVKLMMKAR--FGRIVNITSVVGI------ 143 (245)
T ss_dssp HHHHHHHTCCCEEEECCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHT--CEEEEEECCTHHH------
T ss_pred HHHHHhcCCCCEEEECCCCCCCCCcccCCHHHHHHHHhhccHHHHHHHHHHHHHHHhcC--CCEEEEEeChhhc------
Confidence 34799999999975321 1122 2356778777 555666665543 3577777764321
Q ss_pred HHCCCCCCCcEEEeecccHHHHHHHHHHHcCCCCCCeee
Q 019990 143 EFAPSIPAKNITCLTRLDHNRAMGQISERLKVHVSDVKN 181 (332)
Q Consensus 143 ~~~~~~~~~~i~~~t~l~~~r~~~~~a~~~~v~~~~v~~ 181 (332)
.+.+....|+.+|.....+...+++.+. +..++.
T Consensus 144 ---~~~~~~~~Y~~sK~a~~~~~~~la~e~~--~~gi~v 177 (245)
T 2ph3_A 144 ---LGNPGQANYVASKAGLIGFTRAVAKEYA--QRGITV 177 (245)
T ss_dssp ---HCCSSBHHHHHHHHHHHHHHHHHHHHHG--GGTEEE
T ss_pred ---cCCCCCcchHHHHHHHHHHHHHHHHHHH--HcCeEE
Confidence 1223334567778777777777877763 234553
|
| >1ja9_A 4HNR, 1,3,6,8-tetrahydroxynaphthalene reductase; protein-NADPH-active site inhibitor complex, oxidoreductase, chain dehydrogenase; HET: NDP PYQ; 1.50A {Magnaporthe grisea} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=98.83 E-value=3.2e-09 Score=94.37 Aligned_cols=157 Identities=14% Similarity=0.078 Sum_probs=96.7
Q ss_pred CCCCCcEEEEEcCCChhHHHHHHHHHhcccCCCCCCeEEEEEecccchhhhhhhHhhhhhhc--c-CCccceEEeCCHHH
Q 019990 1 MAKNPLRVLVTGAAGQIGYALVPMIARGIMLGPDQPVILHMLDIEPAAEALNGVKMELIDAA--F-PLLKGVVATTDVVE 77 (332)
Q Consensus 1 m~~~~~kI~VtGaaG~IGs~l~~~L~~~~~~~~~~~~~i~l~D~~~~~~~~~~~~~dl~~~~--~-~~~~~v~~~~~~~~ 77 (332)
|+.+.++|+||||+|+||++++..|++.|. +|+++++... +.+.....++.... . ....|+....++.+
T Consensus 17 ~~~~~k~vlItGasggiG~~la~~l~~~G~-------~v~~~~r~~~-~~~~~~~~~l~~~~~~~~~~~~D~~~~~~~~~ 88 (274)
T 1ja9_A 17 KPLAGKVALTTGAGRGIGRGIAIELGRRGA-------SVVVNYGSSS-KAAEEVVAELKKLGAQGVAIQADISKPSEVVA 88 (274)
T ss_dssp CTTTTCEEEETTTTSHHHHHHHHHHHHTTC-------EEEEEESSCH-HHHHHHHHHHHHTTCCEEEEECCTTSHHHHHH
T ss_pred CCCCCCEEEEeCCCchHHHHHHHHHHHCCC-------EEEEEcCCch-HHHHHHHHHHHhcCCcEEEEEecCCCHHHHHH
Confidence 334567899999999999999999999885 7888887321 22332222332211 0 11234433333444
Q ss_pred HhC-------CCcEEEEecCCCCCC---CCCh---hHHHhhhHHHHHHHHHHHHhhcCCCcEEEEEeCChhhHHHHHHHH
Q 019990 78 ACK-------DVNIAVMVGGFPRKE---GMER---KDVMSKNVSIYKAQASALEKHAAPNCKVLVVANPANTNALILKEF 144 (332)
Q Consensus 78 a~~-------~aDiVi~~ag~~~~~---~~~~---~~~~~~N~~~~~~i~~~i~~~~~~~~~viv~snp~~~~~~~~~~~ 144 (332)
+++ +.|+|||.||..... ..+. ...+..|+.....+.+++..+..+..++|++|+.....
T Consensus 89 ~~~~~~~~~~~~d~vi~~Ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~iv~~sS~~~~~------- 161 (274)
T 1ja9_A 89 LFDKAVSHFGGLDFVMSNSGMEVWCDELEVTQELFDKVFNLNTRGQFFVAQQGLKHCRRGGRIILTSSIAAVM------- 161 (274)
T ss_dssp HHHHHHHHHSCEEEEECCCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHEEEEEEEEEECCGGGTC-------
T ss_pred HHHHHHHHcCCCCEEEECCCCCCCcccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCEEEEEcChHhcc-------
Confidence 444 789999999875321 1122 34567888888888888776631124677777532210
Q ss_pred CCCCCCCcEEEeecccHHHHHHHHHHHcC
Q 019990 145 APSIPAKNITCLTRLDHNRAMGQISERLK 173 (332)
Q Consensus 145 ~~~~~~~~i~~~t~l~~~r~~~~~a~~~~ 173 (332)
.+.+....|+.+|...+.+...+++.++
T Consensus 162 -~~~~~~~~Y~~sK~a~~~~~~~~~~e~~ 189 (274)
T 1ja9_A 162 -TGIPNHALYAGSKAAVEGFCRAFAVDCG 189 (274)
T ss_dssp -CSCCSCHHHHHHHHHHHHHHHHHHHHHG
T ss_pred -CCCCCCchHHHHHHHHHHHHHHHHHHhh
Confidence 1233334678888888888888888774
|
| >4dqx_A Probable oxidoreductase protein; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.00A {Rhizobium etli} | Back alignment and structure |
|---|
Probab=98.83 E-value=6.4e-09 Score=93.18 Aligned_cols=161 Identities=17% Similarity=0.154 Sum_probs=97.3
Q ss_pred CCCCCcEEEEEcCCChhHHHHHHHHHhcccCCCCCCeEEEEEecccchhhhhhhHhhhhhhccCCccceEEeCCHHHHh-
Q 019990 1 MAKNPLRVLVTGAAGQIGYALVPMIARGIMLGPDQPVILHMLDIEPAAEALNGVKMELIDAAFPLLKGVVATTDVVEAC- 79 (332)
Q Consensus 1 m~~~~~kI~VtGaaG~IGs~l~~~L~~~~~~~~~~~~~i~l~D~~~~~~~~~~~~~dl~~~~~~~~~~v~~~~~~~~a~- 79 (332)
|..+.++++||||+|+||++++..|++.|. +|++.|++. +.+.....++.........|++...++.+++
T Consensus 23 ~~l~~k~vlVTGas~GIG~aia~~l~~~G~-------~V~~~~r~~--~~~~~~~~~~~~~~~~~~~Dv~d~~~v~~~~~ 93 (277)
T 4dqx_A 23 MDLNQRVCIVTGGGSGIGRATAELFAKNGA-------YVVVADVNE--DAAVRVANEIGSKAFGVRVDVSSAKDAESMVE 93 (277)
T ss_dssp CTTTTCEEEEETTTSHHHHHHHHHHHHTTC-------EEEEEESSH--HHHHHHHHHHCTTEEEEECCTTCHHHHHHHHH
T ss_pred CCCCCCEEEEECCCcHHHHHHHHHHHHCCC-------EEEEEeCCH--HHHHHHHHHhCCceEEEEecCCCHHHHHHHHH
Confidence 334567899999999999999999999886 899999863 2333222222111111123444333333333
Q ss_pred ------CCCcEEEEecCCCCCC---CCChh---HHHhhhHHHHHHHHHHHHhhc--CCCcEEEEEeCChhhHHHHHHHHC
Q 019990 80 ------KDVNIAVMVGGFPRKE---GMERK---DVMSKNVSIYKAQASALEKHA--APNCKVLVVANPANTNALILKEFA 145 (332)
Q Consensus 80 ------~~aDiVi~~ag~~~~~---~~~~~---~~~~~N~~~~~~i~~~i~~~~--~~~~~viv~snp~~~~~~~~~~~~ 145 (332)
...|++|+.||..... ..+.+ ..++.|+.....+.+++..+- ...+++|++|+....
T Consensus 94 ~~~~~~g~iD~lv~nAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~~~~~~~~~~g~iv~isS~~~~--------- 164 (277)
T 4dqx_A 94 KTTAKWGRVDVLVNNAGFGTTGNVVTIPEETWDRIMSVNVKGIFLCSKYVIPVMRRNGGGSIINTTSYTAT--------- 164 (277)
T ss_dssp HHHHHHSCCCEEEECCCCCCCBCTTTSCHHHHHHHHHHHTHHHHHHHHHHHHHHTTTTCEEEEEECCGGGT---------
T ss_pred HHHHHcCCCCEEEECCCcCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCCcEEEEECchhhC---------
Confidence 3789999999974321 12222 355678777665555554332 124577777764321
Q ss_pred CCCCCCcEEEeecccHHHHHHHHHHHcCCCCCCeee
Q 019990 146 PSIPAKNITCLTRLDHNRAMGQISERLKVHVSDVKN 181 (332)
Q Consensus 146 ~~~~~~~i~~~t~l~~~r~~~~~a~~~~v~~~~v~~ 181 (332)
.+.+....|+.+|.....+.+.++..++ +..|+.
T Consensus 165 ~~~~~~~~Y~asKaa~~~l~~~la~e~~--~~gi~v 198 (277)
T 4dqx_A 165 SAIADRTAYVASKGAISSLTRAMAMDHA--KEGIRV 198 (277)
T ss_dssp SCCTTBHHHHHHHHHHHHHHHHHHHHHG--GGTEEE
T ss_pred cCCCCChhHHHHHHHHHHHHHHHHHHhh--hcCeEE
Confidence 2334444678888888888888888875 345664
|
| >3svt_A Short-chain type dehydrogenase/reductase; ssgcid, seattle structural genomics center for infectious DI oxidoreductase; 2.00A {Mycobacterium ulcerans} | Back alignment and structure |
|---|
Probab=98.82 E-value=3.8e-09 Score=94.69 Aligned_cols=163 Identities=13% Similarity=0.066 Sum_probs=100.5
Q ss_pred CCcEEEEEcCCChhHHHHHHHHHhcccCCCCCCeEEEEEecccchhhhhhhHhhhhhhcc------CCccceEEeCCHHH
Q 019990 4 NPLRVLVTGAAGQIGYALVPMIARGIMLGPDQPVILHMLDIEPAAEALNGVKMELIDAAF------PLLKGVVATTDVVE 77 (332)
Q Consensus 4 ~~~kI~VtGaaG~IGs~l~~~L~~~~~~~~~~~~~i~l~D~~~~~~~~~~~~~dl~~~~~------~~~~~v~~~~~~~~ 77 (332)
+.++|+||||+|+||++++..|++.|. +|+++|++. +.+.....++..... ....|++...++.+
T Consensus 10 ~~k~vlVTGas~gIG~aia~~l~~~G~-------~V~~~~r~~--~~~~~~~~~l~~~~~~~~~~~~~~~Dv~~~~~v~~ 80 (281)
T 3svt_A 10 QDRTYLVTGGGSGIGKGVAAGLVAAGA-------SVMIVGRNP--DKLAGAVQELEALGANGGAIRYEPTDITNEDETAR 80 (281)
T ss_dssp TTCEEEEETTTSHHHHHHHHHHHHTTC-------EEEEEESCH--HHHHHHHHHHHTTCCSSCEEEEEECCTTSHHHHHH
T ss_pred CCCEEEEeCCCcHHHHHHHHHHHHCCC-------EEEEEeCCH--HHHHHHHHHHHHhCCCCceEEEEeCCCCCHHHHHH
Confidence 467899999999999999999999886 899999864 234433334432111 11134433333333
Q ss_pred Hh-------CCCcEEEEecCCCCCC----CCCh---hHHHhhhHHHHHHHHHHHHhhc--CCCcEEEEEeCChhhHHHHH
Q 019990 78 AC-------KDVNIAVMVGGFPRKE----GMER---KDVMSKNVSIYKAQASALEKHA--APNCKVLVVANPANTNALIL 141 (332)
Q Consensus 78 a~-------~~aDiVi~~ag~~~~~----~~~~---~~~~~~N~~~~~~i~~~i~~~~--~~~~~viv~snp~~~~~~~~ 141 (332)
++ ...|++||.||..... ..+. ...++.|+.....+.+++..+- ...+++|++|+... +
T Consensus 81 ~~~~~~~~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~~~~~~~~~~g~iv~isS~~~---~-- 155 (281)
T 3svt_A 81 AVDAVTAWHGRLHGVVHCAGGSENIGPITQVDSEAWRRTVDLNVNGTMYVLKHAAREMVRGGGGSFVGISSIAA---S-- 155 (281)
T ss_dssp HHHHHHHHHSCCCEEEECCCCCCCCCCGGGCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCEEEEEECCHHH---H--
T ss_pred HHHHHHHHcCCCCEEEECCCcCCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCcEEEEEeCHHH---c--
Confidence 33 2679999999962211 1222 2356778877766666554432 13467777775321 1
Q ss_pred HHHCCCCCCCcEEEeecccHHHHHHHHHHHcCCCCCCeeeeEEEec
Q 019990 142 KEFAPSIPAKNITCLTRLDHNRAMGQISERLKVHVSDVKNVIIWGN 187 (332)
Q Consensus 142 ~~~~~~~~~~~i~~~t~l~~~r~~~~~a~~~~v~~~~v~~~~V~G~ 187 (332)
.+.+....|+.+|.....+.+.++..++ +..|+. +.+.+
T Consensus 156 ----~~~~~~~~Y~asK~a~~~l~~~la~e~~--~~gi~v-n~v~P 194 (281)
T 3svt_A 156 ----NTHRWFGAYGVTKSAVDHLMQLAADELG--ASWVRV-NSIRP 194 (281)
T ss_dssp ----SCCTTCTHHHHHHHHHHHHHHHHHHHHG--GGTEEE-EEEEE
T ss_pred ----CCCCCChhHHHHHHHHHHHHHHHHHHhh--hcCeEE-EEEEe
Confidence 2334444678888888888888888875 345664 33443
|
| >1hdc_A 3-alpha, 20 beta-hydroxysteroid dehydrogenase; oxidoreductase; HET: CBO; 2.20A {Streptomyces exfoliatus} SCOP: c.2.1.2 PDB: 2hsd_A* | Back alignment and structure |
|---|
Probab=98.82 E-value=5.1e-09 Score=92.48 Aligned_cols=156 Identities=14% Similarity=0.070 Sum_probs=93.3
Q ss_pred CCcEEEEEcCCChhHHHHHHHHHhcccCCCCCCeEEEEEecccchhhhhhhHhhhhhhccCCccceEEeCCHHHHhC---
Q 019990 4 NPLRVLVTGAAGQIGYALVPMIARGIMLGPDQPVILHMLDIEPAAEALNGVKMELIDAAFPLLKGVVATTDVVEACK--- 80 (332)
Q Consensus 4 ~~~kI~VtGaaG~IGs~l~~~L~~~~~~~~~~~~~i~l~D~~~~~~~~~~~~~dl~~~~~~~~~~v~~~~~~~~a~~--- 80 (332)
+.++|+||||+|+||++++..|++.|. +|++.|++. +.+.....++.........|++...++.++++
T Consensus 4 ~~k~vlVTGas~gIG~~ia~~l~~~G~-------~V~~~~r~~--~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~ 74 (254)
T 1hdc_A 4 SGKTVIITGGARGLGAEAARQAVAAGA-------RVVLADVLD--EEGAATARELGDAARYQHLDVTIEEDWQRVVAYAR 74 (254)
T ss_dssp CCSEEEEETTTSHHHHHHHHHHHHTTC-------EEEEEESCH--HHHHHHHHTTGGGEEEEECCTTCHHHHHHHHHHHH
T ss_pred CCCEEEEECCCcHHHHHHHHHHHHCCC-------EEEEEeCCH--HHHHHHHHHhCCceeEEEecCCCHHHHHHHHHHHH
Confidence 357899999999999999999999885 899999863 22332222221100111224433333433333
Q ss_pred ----CCcEEEEecCCCCCC---CCCh---hHHHhhhHHHHH----HHHHHHHhhcCCCcEEEEEeCChhhHHHHHHHHCC
Q 019990 81 ----DVNIAVMVGGFPRKE---GMER---KDVMSKNVSIYK----AQASALEKHAAPNCKVLVVANPANTNALILKEFAP 146 (332)
Q Consensus 81 ----~aDiVi~~ag~~~~~---~~~~---~~~~~~N~~~~~----~i~~~i~~~~~~~~~viv~snp~~~~~~~~~~~~~ 146 (332)
+.|++|+.||..... ..+. ...+..|+.... .+++.+++.. ..++|++|+.... .
T Consensus 75 ~~~g~iD~lv~nAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~--~g~iv~isS~~~~---------~ 143 (254)
T 1hdc_A 75 EEFGSVDGLVNNAGISTGMFLETESVERFRKVVEINLTGVFIGMKTVIPAMKDAG--GGSIVNISSAAGL---------M 143 (254)
T ss_dssp HHHSCCCEEEECCCCCCCSCGGGSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHT--CEEEEEECCGGGT---------S
T ss_pred HHcCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHcC--CCEEEEECchhhc---------c
Confidence 799999999975321 1222 234566765554 5566666553 4577777764321 1
Q ss_pred CCCCCcEEEeecccHHHHHHHHHHHcCCCCCCeee
Q 019990 147 SIPAKNITCLTRLDHNRAMGQISERLKVHVSDVKN 181 (332)
Q Consensus 147 ~~~~~~i~~~t~l~~~r~~~~~a~~~~v~~~~v~~ 181 (332)
+.+....|+.+|.....+.+.++..++ +..|+.
T Consensus 144 ~~~~~~~Y~asK~a~~~~~~~la~e~~--~~gi~v 176 (254)
T 1hdc_A 144 GLALTSSYGASKWGVRGLSKLAAVELG--TDRIRV 176 (254)
T ss_dssp CCTTCHHHHHHHHHHHHHHHHHHHHHG--GGTEEE
T ss_pred CCCCchhHHHHHHHHHHHHHHHHHHhh--hcCeEE
Confidence 233344677788877788888887764 334553
|
| >2wm3_A NMRA-like family domain containing protein 1; unknown function; HET: NAP NFL; 1.85A {Homo sapiens} PDB: 2wmd_A* 2exx_A* 3dxf_A 3e5m_A | Back alignment and structure |
|---|
Probab=98.82 E-value=4.8e-09 Score=94.59 Aligned_cols=154 Identities=12% Similarity=0.014 Sum_probs=93.7
Q ss_pred CcEEEEEcCCChhHHHHHHHHHhcc-cCCCCCCeEEEEEecccchhhhhhhHhhhhhhcc-CCccceEEeCCHHHHhCCC
Q 019990 5 PLRVLVTGAAGQIGYALVPMIARGI-MLGPDQPVILHMLDIEPAAEALNGVKMELIDAAF-PLLKGVVATTDVVEACKDV 82 (332)
Q Consensus 5 ~~kI~VtGaaG~IGs~l~~~L~~~~-~~~~~~~~~i~l~D~~~~~~~~~~~~~dl~~~~~-~~~~~v~~~~~~~~a~~~a 82 (332)
+++|+||||+|++|++++..|++.+ . +|++++++... .. ...+..... ....|+....++.++++++
T Consensus 5 ~~~ilVtGatG~iG~~l~~~L~~~g~~-------~V~~~~R~~~~--~~--~~~l~~~~~~~~~~D~~d~~~l~~~~~~~ 73 (299)
T 2wm3_A 5 KKLVVVFGGTGAQGGSVARTLLEDGTF-------KVRVVTRNPRK--KA--AKELRLQGAEVVQGDQDDQVIMELALNGA 73 (299)
T ss_dssp CCEEEEETTTSHHHHHHHHHHHHHCSS-------EEEEEESCTTS--HH--HHHHHHTTCEEEECCTTCHHHHHHHHTTC
T ss_pred CCEEEEECCCchHHHHHHHHHHhcCCc-------eEEEEEcCCCC--HH--HHHHHHCCCEEEEecCCCHHHHHHHHhcC
Confidence 5789999999999999999999876 5 89999886421 11 112221111 1123444445677789999
Q ss_pred cEEEEecCCCCCCCCChhHHHhhhHHHHHHHHHHHHhhcCCCcEEEEEeCChhhHHHHHHHHCCCCCCCcEEEeecccHH
Q 019990 83 NIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEKHAAPNCKVLVVANPANTNALILKEFAPSIPAKNITCLTRLDHN 162 (332)
Q Consensus 83 DiVi~~ag~~~~~~~~~~~~~~~N~~~~~~i~~~i~~~~~~~~~viv~snp~~~~~~~~~~~~~~~~~~~i~~~t~l~~~ 162 (332)
|+|||+++..... ....|+...+++++++++.+ . .++|..|. ..... . +.-++...++.++...+
T Consensus 74 d~vi~~a~~~~~~------~~~~~~~~~~~~~~aa~~~g-v-~~iv~~S~-~~~~~-----~-~~~~~~~~y~~sK~~~e 138 (299)
T 2wm3_A 74 YATFIVTNYWESC------SQEQEVKQGKLLADLARRLG-L-HYVVYSGL-ENIKK-----L-TAGRLAAAHFDGKGEVE 138 (299)
T ss_dssp SEEEECCCHHHHT------CHHHHHHHHHHHHHHHHHHT-C-SEEEECCC-CCHHH-----H-TTTSCCCHHHHHHHHHH
T ss_pred CEEEEeCCCCccc------cchHHHHHHHHHHHHHHHcC-C-CEEEEEcC-ccccc-----c-CCCcccCchhhHHHHHH
Confidence 9999998742111 13456778899999998875 2 25555443 22111 1 11111122334444444
Q ss_pred HHHHHHHHHcCCCCCCeeeeEEEecC
Q 019990 163 RAMGQISERLKVHVSDVKNVIIWGNH 188 (332)
Q Consensus 163 r~~~~~a~~~~v~~~~v~~~~V~G~h 188 (332)
++ .+..|++...+|+..++|+.
T Consensus 139 ~~----~~~~gi~~~ilrp~~~~~~~ 160 (299)
T 2wm3_A 139 EY----FRDIGVPMTSVRLPCYFENL 160 (299)
T ss_dssp HH----HHHHTCCEEEEECCEEGGGG
T ss_pred HH----HHHCCCCEEEEeecHHhhhc
Confidence 33 34468998889988888863
|
| >1qsg_A Enoyl-[acyl-carrier-protein] reductase; enoyl reductase, oxidoreductase; HET: GLC NAD TCL; 1.75A {Escherichia coli} SCOP: c.2.1.2 PDB: 1c14_A* 1i2z_A* 1i30_A* 1lx6_A* 1lxc_A* 1mfp_A* 2fhs_A 1qg6_A* 1dfg_A* 1dfh_A* 1d8a_A* 1dfi_A* 3pje_A* 3pjd_A* 3pjf_A* | Back alignment and structure |
|---|
Probab=98.82 E-value=2.5e-09 Score=94.97 Aligned_cols=157 Identities=19% Similarity=0.202 Sum_probs=98.0
Q ss_pred CCcEEEEEcCC--ChhHHHHHHHHHhcccCCCCCCeEEEEEecccchhhhhhhHhhhhhh--c-cCCccceEEeCCHHHH
Q 019990 4 NPLRVLVTGAA--GQIGYALVPMIARGIMLGPDQPVILHMLDIEPAAEALNGVKMELIDA--A-FPLLKGVVATTDVVEA 78 (332)
Q Consensus 4 ~~~kI~VtGaa--G~IGs~l~~~L~~~~~~~~~~~~~i~l~D~~~~~~~~~~~~~dl~~~--~-~~~~~~v~~~~~~~~a 78 (332)
+.++|+||||+ |+||++++..|++.|. +|+++|++. .......++... . .....|++...++.++
T Consensus 8 ~~k~vlVTGas~~~gIG~~ia~~l~~~G~-------~V~~~~r~~---~~~~~~~~l~~~~~~~~~~~~D~~~~~~v~~~ 77 (265)
T 1qsg_A 8 SGKRILVTGVASKLSIAYGIAQAMHREGA-------ELAFTYQND---KLKGRVEEFAAQLGSDIVLQCDVAEDASIDTM 77 (265)
T ss_dssp TTCEEEECCCCSTTSHHHHHHHHHHHTTC-------EEEEEESST---TTHHHHHHHHHHTTCCCEEECCTTCHHHHHHH
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHHHCCC-------EEEEEcCcH---HHHHHHHHHHHhcCCcEEEEccCCCHHHHHHH
Confidence 34679999998 9999999999999885 899998754 111122222211 0 1112344433333333
Q ss_pred hC-------CCcEEEEecCCCCC-----C--C-CCh---hHHHhhhHHHHHHHHHHHHhhcCCCcEEEEEeCChhhHHHH
Q 019990 79 CK-------DVNIAVMVGGFPRK-----E--G-MER---KDVMSKNVSIYKAQASALEKHAAPNCKVLVVANPANTNALI 140 (332)
Q Consensus 79 ~~-------~aDiVi~~ag~~~~-----~--~-~~~---~~~~~~N~~~~~~i~~~i~~~~~~~~~viv~snp~~~~~~~ 140 (332)
++ ..|++||.||.... + . .+. ...+..|+.....+.+++..+-.+.+++|++|+....
T Consensus 78 ~~~~~~~~g~iD~lv~~Ag~~~~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~g~iv~isS~~~~---- 153 (265)
T 1qsg_A 78 FAELGKVWPKFDGFVHSIGFAPGDQLDGDYVNAVTREGFKIAHDISSYSFVAMAKACRSMLNPGSALLTLSYLGAE---- 153 (265)
T ss_dssp HHHHHTTCSSEEEEEECCCCCCGGGGSSCHHHHCCHHHHHHHHHHHTHHHHHHHHHHGGGEEEEEEEEEEECGGGT----
T ss_pred HHHHHHHcCCCCEEEECCCCCCccccCCCccccCCHHHHHHHHHHHhHHHHHHHHHHHHHhccCCEEEEEcchhhc----
Confidence 33 67999999997531 1 1 222 2356789888888888887763223577777763221
Q ss_pred HHHHCCCCCCCcEEEeecccHHHHHHHHHHHcCCCCCCeee
Q 019990 141 LKEFAPSIPAKNITCLTRLDHNRAMGQISERLKVHVSDVKN 181 (332)
Q Consensus 141 ~~~~~~~~~~~~i~~~t~l~~~r~~~~~a~~~~v~~~~v~~ 181 (332)
.+.+....|+.+|.....+.+.+++.++ +..|+.
T Consensus 154 -----~~~~~~~~Y~~sK~a~~~~~~~la~e~~--~~gi~v 187 (265)
T 1qsg_A 154 -----RAIPNYNVMGLAKASLEANVRYMANAMG--PEGVRV 187 (265)
T ss_dssp -----SBCTTTTHHHHHHHHHHHHHHHHHHHHT--TTTEEE
T ss_pred -----cCCCCchHHHHHHHHHHHHHHHHHHHhh--hcCeEE
Confidence 1233344678888888888888888874 345664
|
| >2d1y_A Hypothetical protein TT0321; strucrtural genomics, thermus thermophilus HB8, structural genomics, NPPSFA; HET: NAD; 1.65A {Thermus thermophilus} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=98.82 E-value=2.7e-08 Score=87.87 Aligned_cols=161 Identities=14% Similarity=0.081 Sum_probs=97.3
Q ss_pred CCCcEEEEEcCCChhHHHHHHHHHhcccCCCCCCeEEEEEecccchhhhhhhHhhhhhhccCCccceEEeCCHHHHh---
Q 019990 3 KNPLRVLVTGAAGQIGYALVPMIARGIMLGPDQPVILHMLDIEPAAEALNGVKMELIDAAFPLLKGVVATTDVVEAC--- 79 (332)
Q Consensus 3 ~~~~kI~VtGaaG~IGs~l~~~L~~~~~~~~~~~~~i~l~D~~~~~~~~~~~~~dl~~~~~~~~~~v~~~~~~~~a~--- 79 (332)
.+.++|+||||+|+||++++..|++.|. +|++.|++.. . .....++.. .....|++...++.+++
T Consensus 4 l~~k~vlVTGas~gIG~~ia~~l~~~G~-------~V~~~~r~~~--~-~~~~~~~~~--~~~~~D~~~~~~~~~~~~~~ 71 (256)
T 2d1y_A 4 FAGKGVLVTGGARGIGRAIAQAFAREGA-------LVALCDLRPE--G-KEVAEAIGG--AFFQVDLEDERERVRFVEEA 71 (256)
T ss_dssp TTTCEEEEETTTSHHHHHHHHHHHHTTC-------EEEEEESSTT--H-HHHHHHHTC--EEEECCTTCHHHHHHHHHHH
T ss_pred CCCCEEEEeCCCCHHHHHHHHHHHHCCC-------EEEEEeCChh--H-HHHHHHhhC--CEEEeeCCCHHHHHHHHHHH
Confidence 3467899999999999999999999885 8999998642 1 211122211 11122333333333333
Q ss_pred ----CCCcEEEEecCCCCCC---CCCh---hHHHhhhHHHHHHHHHHHHhhc--CCCcEEEEEeCChhhHHHHHHHHCCC
Q 019990 80 ----KDVNIAVMVGGFPRKE---GMER---KDVMSKNVSIYKAQASALEKHA--APNCKVLVVANPANTNALILKEFAPS 147 (332)
Q Consensus 80 ----~~aDiVi~~ag~~~~~---~~~~---~~~~~~N~~~~~~i~~~i~~~~--~~~~~viv~snp~~~~~~~~~~~~~~ 147 (332)
...|++||.||..... ..+. ...+..|+.....+.+++..+- ....++|++|+.... .+
T Consensus 72 ~~~~g~iD~lv~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~m~~~~~g~iv~isS~~~~---------~~ 142 (256)
T 2d1y_A 72 AYALGRVDVLVNNAAIAAPGSALTVRLPEWRRVLEVNLTAPMHLSALAAREMRKVGGGAIVNVASVQGL---------FA 142 (256)
T ss_dssp HHHHSCCCEEEECCCCCCCBCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHTTTCEEEEEECCGGGT---------SB
T ss_pred HHHcCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCcEEEEEcccccc---------CC
Confidence 3789999999874321 1222 2456778877777666554321 123577777764321 12
Q ss_pred CCCCcEEEeecccHHHHHHHHHHHcCCCCCCeeeeEEEec
Q 019990 148 IPAKNITCLTRLDHNRAMGQISERLKVHVSDVKNVIIWGN 187 (332)
Q Consensus 148 ~~~~~i~~~t~l~~~r~~~~~a~~~~v~~~~v~~~~V~G~ 187 (332)
.+....|+.+|.....+.+.++..++ +..++. +.+.+
T Consensus 143 ~~~~~~Y~~sK~a~~~~~~~la~e~~--~~gi~v-~~v~P 179 (256)
T 2d1y_A 143 EQENAAYNASKGGLVNLTRSLALDLA--PLRIRV-NAVAP 179 (256)
T ss_dssp CTTBHHHHHHHHHHHHHHHHHHHHHG--GGTEEE-EEEEE
T ss_pred CCCChhHHHHHHHHHHHHHHHHHHHh--hcCeEE-EEEee
Confidence 33334677788888888888888765 345664 44454
|
| >1gee_A Glucose 1-dehydrogenase; short-chain dehydrogenase/reductase, oxidoreductase; HET: NAD; 1.60A {Bacillus megaterium} SCOP: c.2.1.2 PDB: 1rwb_A* 1gco_A* 1g6k_A* 3aus_A 3aut_A* 3auu_A* | Back alignment and structure |
|---|
Probab=98.82 E-value=2.3e-09 Score=94.83 Aligned_cols=152 Identities=12% Similarity=0.085 Sum_probs=90.2
Q ss_pred CCcEEEEEcCCChhHHHHHHHHHhcccCCCCCCeEEEEEec-ccchhhhhhhHhhhhhhc--c-CCccceEEeCCHHHHh
Q 019990 4 NPLRVLVTGAAGQIGYALVPMIARGIMLGPDQPVILHMLDI-EPAAEALNGVKMELIDAA--F-PLLKGVVATTDVVEAC 79 (332)
Q Consensus 4 ~~~kI~VtGaaG~IGs~l~~~L~~~~~~~~~~~~~i~l~D~-~~~~~~~~~~~~dl~~~~--~-~~~~~v~~~~~~~~a~ 79 (332)
+.++|+||||+|+||++++..|++.|. +|+++++ +. +.+.....++.... . ....|++...++.+++
T Consensus 6 ~~k~vlITGasggiG~~~a~~l~~~G~-------~V~~~~r~~~--~~~~~~~~~l~~~~~~~~~~~~D~~~~~~~~~~~ 76 (261)
T 1gee_A 6 EGKVVVITGSSTGLGKSMAIRFATEKA-------KVVVNYRSKE--DEANSVLEEIKKVGGEAIAVKGDVTVESDVINLV 76 (261)
T ss_dssp TTCEEEETTCSSHHHHHHHHHHHHTTC-------EEEEEESSCH--HHHHHHHHHHHHTTCEEEEEECCTTSHHHHHHHH
T ss_pred CCCEEEEeCCCChHHHHHHHHHHHCCC-------EEEEEcCCCh--HHHHHHHHHHHhcCCceEEEECCCCCHHHHHHHH
Confidence 457899999999999999999999875 8999987 42 22322222332110 0 1112333333333333
Q ss_pred C-------CCcEEEEecCCCCCC---CCCh---hHHHhhhHHHHHHHHHHHHhhc---CCCcEEEEEeCChhhHHHHHHH
Q 019990 80 K-------DVNIAVMVGGFPRKE---GMER---KDVMSKNVSIYKAQASALEKHA---APNCKVLVVANPANTNALILKE 143 (332)
Q Consensus 80 ~-------~aDiVi~~ag~~~~~---~~~~---~~~~~~N~~~~~~i~~~i~~~~---~~~~~viv~snp~~~~~~~~~~ 143 (332)
+ +.|+|||.||..... ..+. ...+..|+.....+.+.+..+. ....++|++|+....
T Consensus 77 ~~~~~~~g~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~~~~~iv~isS~~~~------- 149 (261)
T 1gee_A 77 QSAIKEFGKLDVMINNAGLENPVSSHEMSLSDWNKVIDTNLTGAFLGSREAIKYFVENDIKGTVINMSSVHEK------- 149 (261)
T ss_dssp HHHHHHHSCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHTTCCCEEEEECCGGGT-------
T ss_pred HHHHHHcCCCCEEEECCCCCCCCCcccCCHHHHHHHHHhhhHHHHHHHHHHHHHHHhCCCCCEEEEeCCHHhc-------
Confidence 3 789999999875321 1122 2356677766665555544331 113577777763221
Q ss_pred HCCCCCCCcEEEeecccHHHHHHHHHHHcC
Q 019990 144 FAPSIPAKNITCLTRLDHNRAMGQISERLK 173 (332)
Q Consensus 144 ~~~~~~~~~i~~~t~l~~~r~~~~~a~~~~ 173 (332)
.+.++...|+.+|.....+...+++.+.
T Consensus 150 --~~~~~~~~Y~~sK~a~~~~~~~la~e~~ 177 (261)
T 1gee_A 150 --IPWPLFVHYAASKGGMKLMTETLALEYA 177 (261)
T ss_dssp --SCCTTCHHHHHHHHHHHHHHHHHHHHHG
T ss_pred --CCCCCccHHHHHHHHHHHHHHHHHHHhc
Confidence 2234444678888877788777877763
|
| >3op4_A 3-oxoacyl-[acyl-carrier protein] reductase; 3-ketoacyl-(acyl-carrier-protein) reductase; HET: MSE NAP; 1.60A {Vibrio cholerae o1 biovar el tor} SCOP: c.2.1.2 PDB: 3rsh_A* 3rro_A* 4i08_A* 3tzk_A 3tzc_A* 3u09_A 3tzh_A 1q7b_A* 1i01_A* 1q7c_A* 2cf2_E | Back alignment and structure |
|---|
Probab=98.82 E-value=9.1e-09 Score=90.56 Aligned_cols=158 Identities=16% Similarity=0.142 Sum_probs=96.5
Q ss_pred CCcEEEEEcCCChhHHHHHHHHHhcccCCCCCCeEEEEEecccchhhhhhhHhhhhhhccCCccceEEeCCHHHHhC---
Q 019990 4 NPLRVLVTGAAGQIGYALVPMIARGIMLGPDQPVILHMLDIEPAAEALNGVKMELIDAAFPLLKGVVATTDVVEACK--- 80 (332)
Q Consensus 4 ~~~kI~VtGaaG~IGs~l~~~L~~~~~~~~~~~~~i~l~D~~~~~~~~~~~~~dl~~~~~~~~~~v~~~~~~~~a~~--- 80 (332)
+.++++||||+|+||++++..|++.|. +|++.|++. +.++....++.........|++...++.++++
T Consensus 8 ~gk~~lVTGas~gIG~a~a~~l~~~G~-------~V~~~~r~~--~~~~~~~~~~~~~~~~~~~Dv~d~~~v~~~~~~~~ 78 (248)
T 3op4_A 8 EGKVALVTGASRGIGKAIAELLAERGA-------KVIGTATSE--SGAQAISDYLGDNGKGMALNVTNPESIEAVLKAIT 78 (248)
T ss_dssp TTCEEEESSCSSHHHHHHHHHHHHTTC-------EEEEEESSH--HHHHHHHHHHGGGEEEEECCTTCHHHHHHHHHHHH
T ss_pred CCCEEEEeCCCCHHHHHHHHHHHHCCC-------EEEEEeCCH--HHHHHHHHHhcccceEEEEeCCCHHHHHHHHHHHH
Confidence 457899999999999999999999886 899999864 23333222332211111234443333433333
Q ss_pred ----CCcEEEEecCCCCCC---CCCh---hHHHhhhHHHHHHHHHHHHhhc--CCCcEEEEEeCChhhHHHHHHHHCCCC
Q 019990 81 ----DVNIAVMVGGFPRKE---GMER---KDVMSKNVSIYKAQASALEKHA--APNCKVLVVANPANTNALILKEFAPSI 148 (332)
Q Consensus 81 ----~aDiVi~~ag~~~~~---~~~~---~~~~~~N~~~~~~i~~~i~~~~--~~~~~viv~snp~~~~~~~~~~~~~~~ 148 (332)
..|++||.||..... ..+. ...++.|+.....+.+++..+- ...+++|++|+.... .+.
T Consensus 79 ~~~g~iD~lv~nAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~~~~m~~~~~g~iv~isS~~~~---------~~~ 149 (248)
T 3op4_A 79 DEFGGVDILVNNAGITRDNLLMRMKEEEWSDIMETNLTSIFRLSKAVLRGMMKKRQGRIINVGSVVGT---------MGN 149 (248)
T ss_dssp HHHCCCSEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCHHHH---------HCC
T ss_pred HHcCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCCCEEEEEcchhhc---------CCC
Confidence 789999999975321 1122 2356778777666655543310 124577777753221 123
Q ss_pred CCCcEEEeecccHHHHHHHHHHHcCCCCCCeee
Q 019990 149 PAKNITCLTRLDHNRAMGQISERLKVHVSDVKN 181 (332)
Q Consensus 149 ~~~~i~~~t~l~~~r~~~~~a~~~~v~~~~v~~ 181 (332)
+....|+.+|.....+.+.+++.++ +..|+.
T Consensus 150 ~~~~~Y~asK~a~~~l~~~la~e~~--~~gi~v 180 (248)
T 3op4_A 150 AGQANYAAAKAGVIGFTKSMAREVA--SRGVTV 180 (248)
T ss_dssp TTCHHHHHHHHHHHHHHHHHHHHHG--GGTEEE
T ss_pred CCChHHHHHHHHHHHHHHHHHHHHH--HhCeEE
Confidence 4445678888888888888888764 345664
|
| >2yut_A Putative short-chain oxidoreductase; alpha and beta proteins (A/B), NAD(P)-binding rossmann-fold structural genomics, NPPSFA; HET: NAP; 2.20A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=98.82 E-value=1.4e-09 Score=92.70 Aligned_cols=143 Identities=13% Similarity=0.114 Sum_probs=91.5
Q ss_pred cEEEEEcCCChhHHHHHHHHHhcccCCCCCCeEEEEEecccchhhhhhhHhhhhhhccCCccceEEeCCHHHHhC---CC
Q 019990 6 LRVLVTGAAGQIGYALVPMIARGIMLGPDQPVILHMLDIEPAAEALNGVKMELIDAAFPLLKGVVATTDVVEACK---DV 82 (332)
Q Consensus 6 ~kI~VtGaaG~IGs~l~~~L~~~~~~~~~~~~~i~l~D~~~~~~~~~~~~~dl~~~~~~~~~~v~~~~~~~~a~~---~a 82 (332)
|+|+||||+|+||++++..|++. +|+++|++. +.+.....++.. .....|+....++.++++ +.
T Consensus 1 k~vlVtGasg~iG~~la~~l~~~---------~V~~~~r~~--~~~~~~~~~~~~--~~~~~D~~~~~~~~~~~~~~~~i 67 (207)
T 2yut_A 1 MRVLITGATGGLGGAFARALKGH---------DLLLSGRRA--GALAELAREVGA--RALPADLADELEAKALLEEAGPL 67 (207)
T ss_dssp CEEEEETTTSHHHHHHHHHTTTS---------EEEEECSCH--HHHHHHHHHHTC--EECCCCTTSHHHHHHHHHHHCSE
T ss_pred CEEEEEcCCcHHHHHHHHHHHhC---------CEEEEECCH--HHHHHHHHhccC--cEEEeeCCCHHHHHHHHHhcCCC
Confidence 47999999999999999998764 478888753 223222222211 112234544445556666 89
Q ss_pred cEEEEecCCCCCC------CCChhHHHhhhHHHHHHHHHHHHhhcCCCcEEEEEeCChhhHHHHHHHHCCCCCCCcEEEe
Q 019990 83 NIAVMVGGFPRKE------GMERKDVMSKNVSIYKAQASALEKHAAPNCKVLVVANPANTNALILKEFAPSIPAKNITCL 156 (332)
Q Consensus 83 DiVi~~ag~~~~~------~~~~~~~~~~N~~~~~~i~~~i~~~~~~~~~viv~snp~~~~~~~~~~~~~~~~~~~i~~~ 156 (332)
|+|||+||..... .......+..|+.....+++++.+.. ..++|++|+.... .+.++...|+.
T Consensus 68 d~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~--~~~iv~~sS~~~~---------~~~~~~~~Y~~ 136 (207)
T 2yut_A 68 DLLVHAVGKAGRASVREAGRDLVEEMLAAHLLTAAFVLKHARFQK--GARAVFFGAYPRY---------VQVPGFAAYAA 136 (207)
T ss_dssp EEEEECCCCCCCBCSCC---CHHHHHHHHHHHHHHHHHHHCCEEE--EEEEEEECCCHHH---------HSSTTBHHHHH
T ss_pred CEEEECCCcCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHhcC--CcEEEEEcChhhc---------cCCCCcchHHH
Confidence 9999999874321 11223467889999989888885432 3567777764321 12344446778
Q ss_pred ecccHHHHHHHHHHHc
Q 019990 157 TRLDHNRAMGQISERL 172 (332)
Q Consensus 157 t~l~~~r~~~~~a~~~ 172 (332)
+|...+.+...+++.+
T Consensus 137 sK~a~~~~~~~~~~~~ 152 (207)
T 2yut_A 137 AKGALEAYLEAARKEL 152 (207)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 8887888877787775
|
| >1zk4_A R-specific alcohol dehydrogenase; short chain reductases/dehydrogenases, magnesium dependence, oxidoreductase; HET: NAP; 1.00A {Lactobacillus brevis} SCOP: c.2.1.2 PDB: 1nxq_A* 1zjy_A* 1zjz_A* 1zk0_A* 1zk1_A* 1zk2_A 1zk3_A | Back alignment and structure |
|---|
Probab=98.81 E-value=1.4e-08 Score=89.12 Aligned_cols=159 Identities=8% Similarity=0.021 Sum_probs=92.2
Q ss_pred CCcEEEEEcCCChhHHHHHHHHHhcccCCCCCCeEEEEEecccchhhhhhhHhhhhhh-cc-CCccceEEeCCHHHHhC-
Q 019990 4 NPLRVLVTGAAGQIGYALVPMIARGIMLGPDQPVILHMLDIEPAAEALNGVKMELIDA-AF-PLLKGVVATTDVVEACK- 80 (332)
Q Consensus 4 ~~~kI~VtGaaG~IGs~l~~~L~~~~~~~~~~~~~i~l~D~~~~~~~~~~~~~dl~~~-~~-~~~~~v~~~~~~~~a~~- 80 (332)
+.++|+||||+|+||++++..|++.|. +|++++++. +.+.....++... .. ....|+....++.++++
T Consensus 5 ~~k~vlVtGasggiG~~~a~~l~~~G~-------~V~~~~r~~--~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~ 75 (251)
T 1zk4_A 5 DGKVAIITGGTLGIGLAIATKFVEEGA-------KVMITGRHS--DVGEKAAKSVGTPDQIQFFQHDSSDEDGWTKLFDA 75 (251)
T ss_dssp TTCEEEETTTTSHHHHHHHHHHHHTTC-------EEEEEESCH--HHHHHHHHHHCCTTTEEEEECCTTCHHHHHHHHHH
T ss_pred CCcEEEEeCCCChHHHHHHHHHHHCCC-------EEEEEeCCH--HHHHHHHHHhhccCceEEEECCCCCHHHHHHHHHH
Confidence 457899999999999999999999885 899999853 2222222222110 00 11123333333333333
Q ss_pred ------CCcEEEEecCCCCCC---CCCh---hHHHhhhHHHHH----HHHHHHHhhcCCCcEEEEEeCChhhHHHHHHHH
Q 019990 81 ------DVNIAVMVGGFPRKE---GMER---KDVMSKNVSIYK----AQASALEKHAAPNCKVLVVANPANTNALILKEF 144 (332)
Q Consensus 81 ------~aDiVi~~ag~~~~~---~~~~---~~~~~~N~~~~~----~i~~~i~~~~~~~~~viv~snp~~~~~~~~~~~ 144 (332)
..|+|||.||..... ..+. ...++.|+.... .+++.+++.+ ...++|++|+....
T Consensus 76 ~~~~~~~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~N~~~~~~~~~~~~~~~~~~~-~~~~iv~isS~~~~-------- 146 (251)
T 1zk4_A 76 TEKAFGPVSTLVNNAGIAVNKSVEETTTAEWRKLLAVNLDGVFFGTRLGIQRMKNKG-LGASIINMSSIEGF-------- 146 (251)
T ss_dssp HHHHHSSCCEEEECCCCCCCCCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHTTSS-SCEEEEEECCGGGT--------
T ss_pred HHHHhCCCCEEEECCCCCCCCChhhCCHHHHHHHHHhhhHHHHHHHHHHHHHHHhcC-CCCEEEEeCCchhc--------
Confidence 589999999874321 1222 235677776544 4444444432 11567777764321
Q ss_pred CCCCCCCcEEEeecccHHHHHHHHHHHcCCCCCCeee
Q 019990 145 APSIPAKNITCLTRLDHNRAMGQISERLKVHVSDVKN 181 (332)
Q Consensus 145 ~~~~~~~~i~~~t~l~~~r~~~~~a~~~~v~~~~v~~ 181 (332)
.+.+....|+.+|.....+...++..+...+..++.
T Consensus 147 -~~~~~~~~Y~~sK~a~~~~~~~~a~e~~~~~~~i~v 182 (251)
T 1zk4_A 147 -VGDPSLGAYNASKGAVRIMSKSAALDCALKDYDVRV 182 (251)
T ss_dssp -SCCTTCHHHHHHHHHHHHHHHHHHHHHHHTTCSEEE
T ss_pred -cCCCCCccchHHHHHHHHHHHHHHHHhcccCCCeEE
Confidence 123334467777877777777777766544555664
|
| >2bka_A CC3, TAT-interacting protein TIP30; NADPH, PEG600, transcription; HET: NDP PE8; 1.7A {Homo sapiens} SCOP: c.2.1.2 PDB: 2fmu_A | Back alignment and structure |
|---|
Probab=98.80 E-value=4.1e-09 Score=91.93 Aligned_cols=156 Identities=10% Similarity=0.090 Sum_probs=97.5
Q ss_pred CcEEEEEcCCChhHHHHHHHHHhcccCCCCCCeEEEEEecccchhhhhhhHhhhhhhccCCccceEEeCCHHHHhCCCcE
Q 019990 5 PLRVLVTGAAGQIGYALVPMIARGIMLGPDQPVILHMLDIEPAAEALNGVKMELIDAAFPLLKGVVATTDVVEACKDVNI 84 (332)
Q Consensus 5 ~~kI~VtGaaG~IGs~l~~~L~~~~~~~~~~~~~i~l~D~~~~~~~~~~~~~dl~~~~~~~~~~v~~~~~~~~a~~~aDi 84 (332)
+++|+||||+|+||++++..|++.|... +|++++++.. .+.... .... .....|+....++.++++++|+
T Consensus 18 ~~~vlVtGasg~iG~~l~~~L~~~G~~~-----~V~~~~r~~~--~~~~~~--~~~~-~~~~~D~~d~~~~~~~~~~~d~ 87 (242)
T 2bka_A 18 NKSVFILGASGETGRVLLKEILEQGLFS-----KVTLIGRRKL--TFDEEA--YKNV-NQEVVDFEKLDDYASAFQGHDV 87 (242)
T ss_dssp CCEEEEECTTSHHHHHHHHHHHHHTCCS-----EEEEEESSCC--CCCSGG--GGGC-EEEECCGGGGGGGGGGGSSCSE
T ss_pred CCeEEEECCCcHHHHHHHHHHHcCCCCC-----EEEEEEcCCC--Cccccc--cCCc-eEEecCcCCHHHHHHHhcCCCE
Confidence 4689999999999999999999877421 7888887642 111100 0111 1112355445566777889999
Q ss_pred EEEecCCCCCCCCChhHHHhhhHHHHHHHHHHHHhhcCCCcEEEEEeCChhhHHHHHHHHCCCCCCCcEEEeecccHHHH
Q 019990 85 AVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEKHAAPNCKVLVVANPANTNALILKEFAPSIPAKNITCLTRLDHNRA 164 (332)
Q Consensus 85 Vi~~ag~~~~~~~~~~~~~~~N~~~~~~i~~~i~~~~~~~~~viv~snp~~~~~~~~~~~~~~~~~~~i~~~t~l~~~r~ 164 (332)
|||+||..... .+..+++..|+.....+++++.+.+ ..++|++|+.... .++...|+.+|...+.
T Consensus 88 vi~~ag~~~~~-~~~~~~~~~n~~~~~~~~~~~~~~~--~~~iv~~SS~~~~-----------~~~~~~Y~~sK~~~e~- 152 (242)
T 2bka_A 88 GFCCLGTTRGK-AGAEGFVRVDRDYVLKSAELAKAGG--CKHFNLLSSKGAD-----------KSSNFLYLQVKGEVEA- 152 (242)
T ss_dssp EEECCCCCHHH-HHHHHHHHHHTHHHHHHHHHHHHTT--CCEEEEECCTTCC-----------TTCSSHHHHHHHHHHH-
T ss_pred EEECCCccccc-CCcccceeeeHHHHHHHHHHHHHCC--CCEEEEEccCcCC-----------CCCcchHHHHHHHHHH-
Confidence 99999864311 1234567889999999999998764 2366777753210 0122234555544333
Q ss_pred HHHHHHHcCCC-CCCeeeeEEEecC
Q 019990 165 MGQISERLKVH-VSDVKNVIIWGNH 188 (332)
Q Consensus 165 ~~~~a~~~~v~-~~~v~~~~V~G~h 188 (332)
+.+.++++ ...+++..++|+.
T Consensus 153 ---~~~~~~~~~~~~vrpg~v~~~~ 174 (242)
T 2bka_A 153 ---KVEELKFDRYSVFRPGVLLCDR 174 (242)
T ss_dssp ---HHHTTCCSEEEEEECCEEECTT
T ss_pred ---HHHhcCCCCeEEEcCceecCCC
Confidence 33556774 6667777777763
|
| >1xgk_A Nitrogen metabolite repression regulator NMRA; rossmann fold, transcriptional regulation, short chain dehyd reductase, NADP binding; 1.40A {Emericella nidulans} SCOP: c.2.1.2 PDB: 1k6x_A* 1k6j_A 1k6i_A* 1ti7_A* 2vus_A 2vut_A* 2vuu_A* | Back alignment and structure |
|---|
Probab=98.80 E-value=7.3e-09 Score=96.03 Aligned_cols=154 Identities=14% Similarity=0.040 Sum_probs=93.3
Q ss_pred CCCCCcEEEEEcCCChhHHHHHHHHHhcccCCCCCCeEEEEEecccchhhhhhhHhhhhhh-c-cCCccc-eEEeCCHHH
Q 019990 1 MAKNPLRVLVTGAAGQIGYALVPMIARGIMLGPDQPVILHMLDIEPAAEALNGVKMELIDA-A-FPLLKG-VVATTDVVE 77 (332)
Q Consensus 1 m~~~~~kI~VtGaaG~IGs~l~~~L~~~~~~~~~~~~~i~l~D~~~~~~~~~~~~~dl~~~-~-~~~~~~-v~~~~~~~~ 77 (332)
|++++++|+||||+||||++++..|++.+. +|++++++... .. ..++... . .....| +....++.+
T Consensus 1 M~~~~~~ilVtGatG~iG~~l~~~L~~~g~-------~V~~~~R~~~~--~~--~~~l~~~~~v~~v~~D~l~d~~~l~~ 69 (352)
T 1xgk_A 1 MAQQKKTIAVVGATGRQGASLIRVAAAVGH-------HVRAQVHSLKG--LI--AEELQAIPNVTLFQGPLLNNVPLMDT 69 (352)
T ss_dssp --CCCCCEEEESTTSHHHHHHHHHHHHTTC-------CEEEEESCSCS--HH--HHHHHTSTTEEEEESCCTTCHHHHHH
T ss_pred CCCCCCEEEEECCCCHHHHHHHHHHHhCCC-------EEEEEECCCCh--hh--HHHHhhcCCcEEEECCccCCHHHHHH
Confidence 665578899999999999999999998775 78888875421 11 1122210 0 011234 444445677
Q ss_pred HhCCCcEEEEecCCCCCCCCChhHHHhhhHHHHHHHHHHHHhhcCCCcEEEEEeCChhhHHHHHHHHCCCCCCCcEEEee
Q 019990 78 ACKDVNIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEKHAAPNCKVLVVANPANTNALILKEFAPSIPAKNITCLT 157 (332)
Q Consensus 78 a~~~aDiVi~~ag~~~~~~~~~~~~~~~N~~~~~~i~~~i~~~~~~~~~viv~snp~~~~~~~~~~~~~~~~~~~i~~~t 157 (332)
+++++|+|||.++... . ..|... +++++++++.+. -.++|.+|+.... .+ +.++...|+.+
T Consensus 70 ~~~~~d~Vi~~a~~~~---~------~~~~~~-~~l~~aa~~~g~-v~~~V~~SS~~~~------~~--~~~~~~~y~~s 130 (352)
T 1xgk_A 70 LFEGAHLAFINTTSQA---G------DEIAIG-KDLADAAKRAGT-IQHYIYSSMPDHS------LY--GPWPAVPMWAP 130 (352)
T ss_dssp HHTTCSEEEECCCSTT---S------CHHHHH-HHHHHHHHHHSC-CSEEEEEECCCGG------GT--SSCCCCTTTHH
T ss_pred HHhcCCEEEEcCCCCC---c------HHHHHH-HHHHHHHHHcCC-ccEEEEeCCcccc------cc--CCCCCccHHHH
Confidence 8899999999876421 1 225554 888999888741 1267777764310 11 11122234556
Q ss_pred cccHHHHHHHHHHHcCCCCCCeeeeEEEecCC
Q 019990 158 RLDHNRAMGQISERLKVHVSDVKNVIIWGNHS 189 (332)
Q Consensus 158 ~l~~~r~~~~~a~~~~v~~~~v~~~~V~G~hg 189 (332)
|...+++. +.++++...+|+- +||+..
T Consensus 131 K~~~E~~~----~~~gi~~~ivrpg-~~g~~~ 157 (352)
T 1xgk_A 131 KFTVENYV----RQLGLPSTFVYAG-IYNNNF 157 (352)
T ss_dssp HHHHHHHH----HTSSSCEEEEEEC-EEGGGC
T ss_pred HHHHHHHH----HHcCCCEEEEecc-eecCCc
Confidence 66555443 3458988889954 688743
|
| >1uay_A Type II 3-hydroxyacyl-COA dehydrogenase; beta oxidation, fatty acid, structural genomi structural genomics/proteomics initiative, RSGI; HET: ADN; 1.40A {Thermus thermophilus} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=98.80 E-value=3.7e-09 Score=92.14 Aligned_cols=141 Identities=16% Similarity=0.040 Sum_probs=87.9
Q ss_pred CcEEEEEcCCChhHHHHHHHHHhcccCCCCCCeEEEEEecccchhhhhhhHhhhhhhccCCccceEEeCCHHHHhC----
Q 019990 5 PLRVLVTGAAGQIGYALVPMIARGIMLGPDQPVILHMLDIEPAAEALNGVKMELIDAAFPLLKGVVATTDVVEACK---- 80 (332)
Q Consensus 5 ~~kI~VtGaaG~IGs~l~~~L~~~~~~~~~~~~~i~l~D~~~~~~~~~~~~~dl~~~~~~~~~~v~~~~~~~~a~~---- 80 (332)
.++|+||||+|+||++++..|++.|. +|+++|++.. .. ++ .....|+....++.++++
T Consensus 2 ~k~vlVtGasggiG~~la~~l~~~G~-------~V~~~~r~~~---~~----~~----~~~~~D~~~~~~~~~~~~~~~~ 63 (242)
T 1uay_A 2 ERSALVTGGASGLGRAAALALKARGY-------RVVVLDLRRE---GE----DL----IYVEGDVTREEDVRRAVARAQE 63 (242)
T ss_dssp CCEEEEETTTSHHHHHHHHHHHHHTC-------EEEEEESSCC---SS----SS----EEEECCTTCHHHHHHHHHHHHH
T ss_pred CCEEEEeCCCChHHHHHHHHHHHCCC-------EEEEEccCcc---cc----ce----EEEeCCCCCHHHHHHHHHHHHh
Confidence 36799999999999999999998885 8999987542 11 00 001123333333444443
Q ss_pred --CCcEEEEecCCCCCCC---C-------ChhHHHhhhHHHHHHHHHHHHhhcCC--------CcEEEEEeCChhhHHHH
Q 019990 81 --DVNIAVMVGGFPRKEG---M-------ERKDVMSKNVSIYKAQASALEKHAAP--------NCKVLVVANPANTNALI 140 (332)
Q Consensus 81 --~aDiVi~~ag~~~~~~---~-------~~~~~~~~N~~~~~~i~~~i~~~~~~--------~~~viv~snp~~~~~~~ 140 (332)
+.|++||.||...... . .....+..|+.....+.+.+...... ..++|++|+....
T Consensus 64 ~~~~d~li~~ag~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~~~~~~~iv~~sS~~~~---- 139 (242)
T 1uay_A 64 EAPLFAVVSAAGVGLAEKILGKEGPHGLESFRRVLEVNLLGTFNVLRLAAWAMRENPPDAEGQRGVIVNTASVAAF---- 139 (242)
T ss_dssp HSCEEEEEECCCCCCCCCSBCSSSBCCHHHHHHHHHHHTHHHHHHHHHHHHHHTTCCCCTTSCSEEEEEECCTHHH----
T ss_pred hCCceEEEEcccccCcccccccccccchHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCCCCCCeEEEEeCChhhc----
Confidence 7899999998743211 1 12345677888887777777654311 1267777653221
Q ss_pred HHHHCCCCCCCcEEEeecccHHHHHHHHHHHc
Q 019990 141 LKEFAPSIPAKNITCLTRLDHNRAMGQISERL 172 (332)
Q Consensus 141 ~~~~~~~~~~~~i~~~t~l~~~r~~~~~a~~~ 172 (332)
.+.++...|+.+|.....+...+++.+
T Consensus 140 -----~~~~~~~~Y~~sK~a~~~~~~~l~~e~ 166 (242)
T 1uay_A 140 -----EGQIGQAAYAASKGGVVALTLPAAREL 166 (242)
T ss_dssp -----HCCTTCHHHHHHHHHHHHHHHHHHHHH
T ss_pred -----cCCCCCchhhHHHHHHHHHHHHHHHHH
Confidence 123334467778877777777777776
|
| >3v2g_A 3-oxoacyl-[acyl-carrier-protein] reductase; structural genomics, PSI-biology, protein structure initiati nysgrc; 2.30A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=98.80 E-value=2e-08 Score=89.63 Aligned_cols=160 Identities=14% Similarity=0.135 Sum_probs=100.5
Q ss_pred CCcEEEEEcCCChhHHHHHHHHHhcccCCCCCCeEEEEEecccchhhhhhhHhhhhhhcc---CCccceEEeCCHHHHhC
Q 019990 4 NPLRVLVTGAAGQIGYALVPMIARGIMLGPDQPVILHMLDIEPAAEALNGVKMELIDAAF---PLLKGVVATTDVVEACK 80 (332)
Q Consensus 4 ~~~kI~VtGaaG~IGs~l~~~L~~~~~~~~~~~~~i~l~D~~~~~~~~~~~~~dl~~~~~---~~~~~v~~~~~~~~a~~ 80 (332)
+.++++||||+|+||.+++..|++.|. +|++.|.+.. +.+.....++..... ....|++...++.++++
T Consensus 30 ~gk~~lVTGas~GIG~aia~~la~~G~-------~V~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~Dv~d~~~v~~~~~ 101 (271)
T 3v2g_A 30 AGKTAFVTGGSRGIGAAIAKRLALEGA-------AVALTYVNAA-ERAQAVVSEIEQAGGRAVAIRADNRDAEAIEQAIR 101 (271)
T ss_dssp TTCEEEEETTTSHHHHHHHHHHHHTTC-------EEEEEESSCH-HHHHHHHHHHHHTTCCEEEEECCTTCHHHHHHHHH
T ss_pred CCCEEEEeCCCcHHHHHHHHHHHHCCC-------EEEEEeCCCH-HHHHHHHHHHHhcCCcEEEEECCCCCHHHHHHHHH
Confidence 457899999999999999999999886 7888876532 233333333332111 11234444333444333
Q ss_pred -------CCcEEEEecCCCCCCC---CCh---hHHHhhhHHHHHHHHHHHHhhcCCCcEEEEEeCChhhHHHHHHHHCCC
Q 019990 81 -------DVNIAVMVGGFPRKEG---MER---KDVMSKNVSIYKAQASALEKHAAPNCKVLVVANPANTNALILKEFAPS 147 (332)
Q Consensus 81 -------~aDiVi~~ag~~~~~~---~~~---~~~~~~N~~~~~~i~~~i~~~~~~~~~viv~snp~~~~~~~~~~~~~~ 147 (332)
..|++|+.||...... .+. ...++.|+.....+.+++...-.+.+++|++++..... .+
T Consensus 102 ~~~~~~g~iD~lvnnAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~~~~m~~~g~iv~isS~~~~~--------~~ 173 (271)
T 3v2g_A 102 ETVEALGGLDILVNSAGIWHSAPLEETTVADFDEVMAVNFRAPFVAIRSASRHLGDGGRIITIGSNLAEL--------VP 173 (271)
T ss_dssp HHHHHHSCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHCCTTCEEEEECCGGGTC--------CC
T ss_pred HHHHHcCCCcEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHhcCCEEEEEeChhhcc--------CC
Confidence 7899999999753211 122 23567788888888888776643346777777643210 12
Q ss_pred CCCCcEEEeecccHHHHHHHHHHHcCCCCCCeee
Q 019990 148 IPAKNITCLTRLDHNRAMGQISERLKVHVSDVKN 181 (332)
Q Consensus 148 ~~~~~i~~~t~l~~~r~~~~~a~~~~v~~~~v~~ 181 (332)
.+....|+.+|.....+.+.+++.++ +..|+.
T Consensus 174 ~~~~~~Y~asKaa~~~l~~~la~e~~--~~gIrv 205 (271)
T 3v2g_A 174 WPGISLYSASKAALAGLTKGLARDLG--PRGITV 205 (271)
T ss_dssp STTCHHHHHHHHHHHHHHHHHHHHHG--GGTCEE
T ss_pred CCCchHHHHHHHHHHHHHHHHHHHhh--hhCeEE
Confidence 34444678888888888888888874 334553
|
| >3guy_A Short-chain dehydrogenase/reductase SDR; structural genomics, oxidoreductase, PSI-2, protein structur initiative; 1.90A {Vibrio parahaemolyticus} | Back alignment and structure |
|---|
Probab=98.80 E-value=2.6e-08 Score=86.40 Aligned_cols=157 Identities=13% Similarity=0.115 Sum_probs=95.8
Q ss_pred CcEEEEEcCCChhHHHHHHHHHhcccCCCCCCeEEEEEecccchhhhhhhHhhhhhhccCCccceEEeCCHHHHhCCC--
Q 019990 5 PLRVLVTGAAGQIGYALVPMIARGIMLGPDQPVILHMLDIEPAAEALNGVKMELIDAAFPLLKGVVATTDVVEACKDV-- 82 (332)
Q Consensus 5 ~~kI~VtGaaG~IGs~l~~~L~~~~~~~~~~~~~i~l~D~~~~~~~~~~~~~dl~~~~~~~~~~v~~~~~~~~a~~~a-- 82 (332)
|++|+||||+|+||.+++..|++.|. +|++.|++. +.+.....++.........|+....++.+.++.+
T Consensus 1 Mk~vlVTGas~gIG~~~a~~l~~~G~-------~V~~~~r~~--~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~ 71 (230)
T 3guy_A 1 MSLIVITGASSGLGAELAKLYDAEGK-------ATYLTGRSE--SKLSTVTNCLSNNVGYRARDLASHQEVEQLFEQLDS 71 (230)
T ss_dssp --CEEEESTTSHHHHHHHHHHHHTTC-------CEEEEESCH--HHHHHHHHTCSSCCCEEECCTTCHHHHHHHHHSCSS
T ss_pred CCEEEEecCCchHHHHHHHHHHHCCC-------EEEEEeCCH--HHHHHHHHHHhhccCeEeecCCCHHHHHHHHHHHhh
Confidence 35799999999999999999999885 799999864 2333222222110011123444444444444443
Q ss_pred --cEEEEecCCCCCC---CCCh---hHHHhhhHHHHHHHHHHHHhhcCC-CcEEEEEeCChhhHHHHHHHHCCCCCCCcE
Q 019990 83 --NIAVMVGGFPRKE---GMER---KDVMSKNVSIYKAQASALEKHAAP-NCKVLVVANPANTNALILKEFAPSIPAKNI 153 (332)
Q Consensus 83 --DiVi~~ag~~~~~---~~~~---~~~~~~N~~~~~~i~~~i~~~~~~-~~~viv~snp~~~~~~~~~~~~~~~~~~~i 153 (332)
|++|+.||..... ..+. ...++.|+.....+.+.+..+-.. ..++|++|+.... .+.+....
T Consensus 72 ~~d~lv~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~~iv~isS~~~~---------~~~~~~~~ 142 (230)
T 3guy_A 72 IPSTVVHSAGSGYFGLLQEQDPEQIQTLIENNLSSAINVLRELVKRYKDQPVNVVMIMSTAAQ---------QPKAQEST 142 (230)
T ss_dssp CCSEEEECCCCCCCSCGGGSCHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCCEEEEECCGGGT---------SCCTTCHH
T ss_pred cCCEEEEeCCcCCCCccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEeecccC---------CCCCCCch
Confidence 9999999874321 1222 235677888777777766554311 2366777654321 22344446
Q ss_pred EEeecccHHHHHHHHHHHcCCCCCCeee
Q 019990 154 TCLTRLDHNRAMGQISERLKVHVSDVKN 181 (332)
Q Consensus 154 ~~~t~l~~~r~~~~~a~~~~v~~~~v~~ 181 (332)
|+.+|.....+.+.+++.++ +..|+.
T Consensus 143 Y~asKaa~~~~~~~la~e~~--~~gi~v 168 (230)
T 3guy_A 143 YCAVKWAVKGLIESVRLELK--GKPMKI 168 (230)
T ss_dssp HHHHHHHHHHHHHHHHHHTT--TSSCEE
T ss_pred hHHHHHHHHHHHHHHHHHHH--hcCeEE
Confidence 78888888888888998876 445664
|
| >3pk0_A Short-chain dehydrogenase/reductase SDR; ssgcid, structural genomics, seattle structural genomics CEN infectious disease; 1.75A {Mycobacterium smegmatis} SCOP: c.2.1.0 | Back alignment and structure |
|---|
Probab=98.80 E-value=9e-09 Score=91.35 Aligned_cols=154 Identities=13% Similarity=0.100 Sum_probs=94.7
Q ss_pred CCCcEEEEEcCCChhHHHHHHHHHhcccCCCCCCeEEEEEecccchhhhhhhHhhhhhhc---c-CCccceEEeCCHHHH
Q 019990 3 KNPLRVLVTGAAGQIGYALVPMIARGIMLGPDQPVILHMLDIEPAAEALNGVKMELIDAA---F-PLLKGVVATTDVVEA 78 (332)
Q Consensus 3 ~~~~kI~VtGaaG~IGs~l~~~L~~~~~~~~~~~~~i~l~D~~~~~~~~~~~~~dl~~~~---~-~~~~~v~~~~~~~~a 78 (332)
.+.++++||||+|+||++++..|++.|. +|++.|++. +.+.....++.... . ....|++...++.++
T Consensus 8 l~~k~vlVTGas~gIG~aia~~l~~~G~-------~V~~~~r~~--~~~~~~~~~l~~~~~~~~~~~~~Dv~~~~~v~~~ 78 (262)
T 3pk0_A 8 LQGRSVVVTGGTKGIGRGIATVFARAGA-------NVAVAGRST--ADIDACVADLDQLGSGKVIGVQTDVSDRAQCDAL 78 (262)
T ss_dssp CTTCEEEETTCSSHHHHHHHHHHHHTTC-------EEEEEESCH--HHHHHHHHHHHTTSSSCEEEEECCTTSHHHHHHH
T ss_pred CCCCEEEEECCCcHHHHHHHHHHHHCCC-------EEEEEeCCH--HHHHHHHHHHHhhCCCcEEEEEcCCCCHHHHHHH
Confidence 3467899999999999999999999886 899999864 33443344443221 0 112344333333333
Q ss_pred h-------CCCcEEEEecCCCCCC---CCChh---HHHhhhHHHHHHHHHHHHhhc--CCCcEEEEEeCChhhHHHHHHH
Q 019990 79 C-------KDVNIAVMVGGFPRKE---GMERK---DVMSKNVSIYKAQASALEKHA--APNCKVLVVANPANTNALILKE 143 (332)
Q Consensus 79 ~-------~~aDiVi~~ag~~~~~---~~~~~---~~~~~N~~~~~~i~~~i~~~~--~~~~~viv~snp~~~~~~~~~~ 143 (332)
+ ...|++||.||..... ..+.+ ..++.|+.....+.+++..+- ....++|++|+.....
T Consensus 79 ~~~~~~~~g~id~lvnnAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~m~~~~~g~iv~isS~~~~~------ 152 (262)
T 3pk0_A 79 AGRAVEEFGGIDVVCANAGVFPDAPLATMTPEQLNGIFAVNVNGTFYAVQACLDALIASGSGRVVLTSSITGPI------ 152 (262)
T ss_dssp HHHHHHHHSCCSEEEECCCCCCCCCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHSSCEEEEECCSBTTT------
T ss_pred HHHHHHHhCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCcEEEEEechhhcc------
Confidence 3 3799999999974321 12322 246778776655555544431 0235777777643210
Q ss_pred HCCCCCCCcEEEeecccHHHHHHHHHHHcC
Q 019990 144 FAPSIPAKNITCLTRLDHNRAMGQISERLK 173 (332)
Q Consensus 144 ~~~~~~~~~i~~~t~l~~~r~~~~~a~~~~ 173 (332)
.+.+....|+.+|.....+.+.++..++
T Consensus 153 --~~~~~~~~Y~asK~a~~~l~~~la~e~~ 180 (262)
T 3pk0_A 153 --TGYPGWSHYGATKAAQLGFMRTAAIELA 180 (262)
T ss_dssp --BCCTTCHHHHHHHHHHHHHHHHHHHHHG
T ss_pred --CCCCCChhhHHHHHHHHHHHHHHHHHHH
Confidence 1234444678888888888888888854
|
| >1xg5_A ARPG836; short chain dehydrogenase, human, SGC, structural genomics, structural genomics consortium, oxidoreductase; HET: NAP; 1.53A {Homo sapiens} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=98.80 E-value=1.2e-08 Score=91.22 Aligned_cols=162 Identities=14% Similarity=0.216 Sum_probs=96.9
Q ss_pred CcEEEEEcCCChhHHHHHHHHHhcccCCCCCCeEEEEEecccchhhhhhhHhhhhhhc----c-CCccceEEeCCHHHHh
Q 019990 5 PLRVLVTGAAGQIGYALVPMIARGIMLGPDQPVILHMLDIEPAAEALNGVKMELIDAA----F-PLLKGVVATTDVVEAC 79 (332)
Q Consensus 5 ~~kI~VtGaaG~IGs~l~~~L~~~~~~~~~~~~~i~l~D~~~~~~~~~~~~~dl~~~~----~-~~~~~v~~~~~~~~a~ 79 (332)
.++|+||||+|+||++++..|++.|. +|++++++. +.+.....++.... . ....|+....++.+++
T Consensus 32 ~k~vlVTGasggIG~~la~~l~~~G~-------~V~~~~r~~--~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~v~~~~ 102 (279)
T 1xg5_A 32 DRLALVTGASGGIGAAVARALVQQGL-------KVVGCARTV--GNIEELAAECKSAGYPGTLIPYRCDLSNEEDILSMF 102 (279)
T ss_dssp TCEEEEESTTSHHHHHHHHHHHHTTC-------EEEEEESCH--HHHHHHHHHHHHTTCSSEEEEEECCTTCHHHHHHHH
T ss_pred CCEEEEECCCchHHHHHHHHHHHCCC-------EEEEEECCh--HHHHHHHHHHHhcCCCceEEEEEecCCCHHHHHHHH
Confidence 46799999999999999999999885 899999853 22332222232211 0 1112443333333333
Q ss_pred C-------CCcEEEEecCCCCCC---CCCh---hHHHhhhHHH----HHHHHHHHHhhcCCCcEEEEEeCChhhHHHHHH
Q 019990 80 K-------DVNIAVMVGGFPRKE---GMER---KDVMSKNVSI----YKAQASALEKHAAPNCKVLVVANPANTNALILK 142 (332)
Q Consensus 80 ~-------~aDiVi~~ag~~~~~---~~~~---~~~~~~N~~~----~~~i~~~i~~~~~~~~~viv~snp~~~~~~~~~ 142 (332)
+ +.|+||+.||..... ..+. ...+..|+.. ++.+++.+++...+..++|++|+.....
T Consensus 103 ~~~~~~~g~iD~vi~~Ag~~~~~~~~~~~~~~~~~~~~~N~~~~~~~~~~~l~~~~~~~~~~g~iv~isS~~~~~----- 177 (279)
T 1xg5_A 103 SAIRSQHSGVDICINNAGLARPDTLLSGSTSGWKDMFNVNVLALSICTREAYQSMKERNVDDGHIININSMSGHR----- 177 (279)
T ss_dssp HHHHHHHCCCSEEEECCCCCCCCCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHTTCCSCEEEEECCGGGTS-----
T ss_pred HHHHHhCCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCCceEEEEcChhhcc-----
Confidence 3 799999999874321 1122 2356778777 6777777776541135777777643210
Q ss_pred HHCCCCCCCcEEEeecccHHHHHHHHHHHcCCCCCCeeee
Q 019990 143 EFAPSIPAKNITCLTRLDHNRAMGQISERLKVHVSDVKNV 182 (332)
Q Consensus 143 ~~~~~~~~~~i~~~t~l~~~r~~~~~a~~~~v~~~~v~~~ 182 (332)
..+.++...|+.+|.....+...+++.+...+..|+..
T Consensus 178 --~~~~~~~~~Y~~sK~a~~~~~~~la~e~~~~~~~i~v~ 215 (279)
T 1xg5_A 178 --VLPLSVTHFYSATKYAVTALTEGLRQELREAQTHIRAT 215 (279)
T ss_dssp --CCSCGGGHHHHHHHHHHHHHHHHHHHHHHHTTCCCEEE
T ss_pred --cCCCCCCchhHHHHHHHHHHHHHHHHHHhhcCCCeEEE
Confidence 01122223567778777777777887765445567643
|
| >1yxm_A Pecra, peroxisomal trans 2-enoyl COA reductase; perioxisomes, fatty acid synthesis, short-chain dehydrogenases/reductases, structural genomics; HET: ADE; 1.90A {Homo sapiens} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=98.79 E-value=6.8e-09 Score=93.89 Aligned_cols=149 Identities=17% Similarity=0.124 Sum_probs=90.5
Q ss_pred CcEEEEEcCCChhHHHHHHHHHhcccCCCCCCeEEEEEecccchhhhhhhHhhhhhh-------cc-CCccceEEeCCHH
Q 019990 5 PLRVLVTGAAGQIGYALVPMIARGIMLGPDQPVILHMLDIEPAAEALNGVKMELIDA-------AF-PLLKGVVATTDVV 76 (332)
Q Consensus 5 ~~kI~VtGaaG~IGs~l~~~L~~~~~~~~~~~~~i~l~D~~~~~~~~~~~~~dl~~~-------~~-~~~~~v~~~~~~~ 76 (332)
.++|+||||+|+||++++..|++.|. +|+++|++. +.+.....++... .. ....|++...++.
T Consensus 18 ~k~vlVTGasggIG~~la~~l~~~G~-------~V~~~~r~~--~~~~~~~~~l~~~~~~~~~~~~~~~~~D~~~~~~v~ 88 (303)
T 1yxm_A 18 GQVAIVTGGATGIGKAIVKELLELGS-------NVVIASRKL--ERLKSAADELQANLPPTKQARVIPIQCNIRNEEEVN 88 (303)
T ss_dssp TCEEEEETTTSHHHHHHHHHHHHTTC-------EEEEEESCH--HHHHHHHHHHHHTSCTTCCCCEEEEECCTTCHHHHH
T ss_pred CCEEEEECCCcHHHHHHHHHHHHCCC-------EEEEEeCCH--HHHHHHHHHHHhhccccCCccEEEEecCCCCHHHHH
Confidence 47899999999999999999999885 899999863 2333333333220 00 1113333333333
Q ss_pred HHhC-------CCcEEEEecCCCCCC---CCCh---hHHHhhhHHHHHHHHHHHHhhc--CCCcEEEEEeCChhhHHHHH
Q 019990 77 EACK-------DVNIAVMVGGFPRKE---GMER---KDVMSKNVSIYKAQASALEKHA--APNCKVLVVANPANTNALIL 141 (332)
Q Consensus 77 ~a~~-------~aDiVi~~ag~~~~~---~~~~---~~~~~~N~~~~~~i~~~i~~~~--~~~~~viv~snp~~~~~~~~ 141 (332)
++++ ..|+|||.||..... ..+. ...++.|+.....+++++.... ....++|++|+.. .
T Consensus 89 ~~~~~~~~~~g~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~~~iv~isS~~-~----- 162 (303)
T 1yxm_A 89 NLVKSTLDTFGKINFLVNNGGGQFLSPAEHISSKGWHAVLETNLTGTFYMCKAVYSSWMKEHGGSIVNIIVPT-K----- 162 (303)
T ss_dssp HHHHHHHHHHSCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHTHHHHCEEEEEECCCC-T-----
T ss_pred HHHHHHHHHcCCCCEEEECCCCCCCCchhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHhcCCeEEEEEeec-c-----
Confidence 3333 589999999964221 1122 2356788888888877765421 0135677777643 1
Q ss_pred HHHCCCCCCCcEEEeecccHHHHHHHHHHHc
Q 019990 142 KEFAPSIPAKNITCLTRLDHNRAMGQISERL 172 (332)
Q Consensus 142 ~~~~~~~~~~~i~~~t~l~~~r~~~~~a~~~ 172 (332)
.+.+....|+.++.....+.+.+++.+
T Consensus 163 ----~~~~~~~~Y~~sK~a~~~~~~~la~e~ 189 (303)
T 1yxm_A 163 ----AGFPLAVHSGAARAGVYNLTKSLALEW 189 (303)
T ss_dssp ----TCCTTCHHHHHHHHHHHHHHHHHHHHT
T ss_pred ----cCCCcchhhHHHHHHHHHHHHHHHHHh
Confidence 123333356667776777777787776
|
| >2ae2_A Protein (tropinone reductase-II); oxidoreductase, tropane alkaloid biosynthesis, reduction of tropinone to pseudotropine; HET: NAP PTO; 1.90A {Datura stramonium} SCOP: c.2.1.2 PDB: 2ae1_A* 1ipe_A* 1ipf_A* | Back alignment and structure |
|---|
Probab=98.79 E-value=1.4e-08 Score=89.87 Aligned_cols=163 Identities=14% Similarity=0.107 Sum_probs=98.4
Q ss_pred CCcEEEEEcCCChhHHHHHHHHHhcccCCCCCCeEEEEEecccchhhhhhhHhhhhhhc--c-CCccceEEeCCHHHHh-
Q 019990 4 NPLRVLVTGAAGQIGYALVPMIARGIMLGPDQPVILHMLDIEPAAEALNGVKMELIDAA--F-PLLKGVVATTDVVEAC- 79 (332)
Q Consensus 4 ~~~kI~VtGaaG~IGs~l~~~L~~~~~~~~~~~~~i~l~D~~~~~~~~~~~~~dl~~~~--~-~~~~~v~~~~~~~~a~- 79 (332)
+.++|+||||+|+||++++..|++.|. +|+++|++. +.+.....++.... . ....|++...++.+++
T Consensus 8 ~~k~vlVTGas~giG~~ia~~l~~~G~-------~V~~~~r~~--~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~ 78 (260)
T 2ae2_A 8 EGCTALVTGGSRGIGYGIVEELASLGA-------SVYTCSRNQ--KELNDCLTQWRSKGFKVEASVCDLSSRSERQELMN 78 (260)
T ss_dssp TTCEEEEESCSSHHHHHHHHHHHHTTC-------EEEEEESCH--HHHHHHHHHHHHTTCEEEEEECCTTCHHHHHHHHH
T ss_pred CCCEEEEECCCcHHHHHHHHHHHHCCC-------EEEEEeCCH--HHHHHHHHHHHhcCCcEEEEEcCCCCHHHHHHHHH
Confidence 357899999999999999999999885 899999853 23332223332111 0 1123443333333333
Q ss_pred -------CCCcEEEEecCCCCCC---CCCh---hHHHhhhHHHHHHHHHHHHhhc--CCCcEEEEEeCChhhHHHHHHHH
Q 019990 80 -------KDVNIAVMVGGFPRKE---GMER---KDVMSKNVSIYKAQASALEKHA--APNCKVLVVANPANTNALILKEF 144 (332)
Q Consensus 80 -------~~aDiVi~~ag~~~~~---~~~~---~~~~~~N~~~~~~i~~~i~~~~--~~~~~viv~snp~~~~~~~~~~~ 144 (332)
...|++||.||..... ..+. ...+..|+.....+.+++..+- ....++|++|+....
T Consensus 79 ~~~~~~~g~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~g~iv~isS~~~~-------- 150 (260)
T 2ae2_A 79 TVANHFHGKLNILVNNAGIVIYKEAKDYTVEDYSLIMSINFEAAYHLSVLAHPFLKASERGNVVFISSVSGA-------- 150 (260)
T ss_dssp HHHHHTTTCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHTSSEEEEEECCGGGT--------
T ss_pred HHHHHcCCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCcEEEEEcchhhc--------
Confidence 4689999999974321 1222 2356778777766666653321 124577777763221
Q ss_pred CCCCCCCcEEEeecccHHHHHHHHHHHcCCCCCCeeeeEEEec
Q 019990 145 APSIPAKNITCLTRLDHNRAMGQISERLKVHVSDVKNVIIWGN 187 (332)
Q Consensus 145 ~~~~~~~~i~~~t~l~~~r~~~~~a~~~~v~~~~v~~~~V~G~ 187 (332)
.+.+....|+.+|.....+.+.+++.++ +..|+. +++.+
T Consensus 151 -~~~~~~~~Y~~sK~a~~~~~~~la~e~~--~~gi~v-~~v~P 189 (260)
T 2ae2_A 151 -LAVPYEAVYGATKGAMDQLTRCLAFEWA--KDNIRV-NGVGP 189 (260)
T ss_dssp -SCCTTCHHHHHHHHHHHHHHHHHHHHTG--GGTEEE-EEEEE
T ss_pred -cCCCCcchHHHHHHHHHHHHHHHHHHHh--hcCcEE-EEEec
Confidence 1234444678888888888888888764 345664 33443
|
| >3n74_A 3-ketoacyl-(acyl-carrier-protein) reductase; seattle structural genomics center for infectious disease, S brucellosis; 2.20A {Brucella melitensis biovar abortus} | Back alignment and structure |
|---|
Probab=98.79 E-value=6.2e-09 Score=92.09 Aligned_cols=161 Identities=20% Similarity=0.222 Sum_probs=95.4
Q ss_pred CCCCCcEEEEEcCCChhHHHHHHHHHhcccCCCCCCeEEEEEecccchhhhhhhHhhhhhhccCCccceEEeCCHHHHhC
Q 019990 1 MAKNPLRVLVTGAAGQIGYALVPMIARGIMLGPDQPVILHMLDIEPAAEALNGVKMELIDAAFPLLKGVVATTDVVEACK 80 (332)
Q Consensus 1 m~~~~~kI~VtGaaG~IGs~l~~~L~~~~~~~~~~~~~i~l~D~~~~~~~~~~~~~dl~~~~~~~~~~v~~~~~~~~a~~ 80 (332)
|+.+.++|+||||+|+||++++..|++.|. +|+++|++. +.+.....++.........|++...++.++++
T Consensus 5 m~l~~k~vlITGas~gIG~~~a~~l~~~G~-------~V~~~~r~~--~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~ 75 (261)
T 3n74_A 5 MSLEGKVALITGAGSGFGEGMAKRFAKGGA-------KVVIVDRDK--AGAERVAGEIGDAALAVAADISKEADVDAAVE 75 (261)
T ss_dssp CTTTTCEEEEETTTSHHHHHHHHHHHHTTC-------EEEEEESCH--HHHHHHHHHHCTTEEEEECCTTSHHHHHHHHH
T ss_pred ccCCCCEEEEECCCchHHHHHHHHHHHCCC-------EEEEEcCCH--HHHHHHHHHhCCceEEEEecCCCHHHHHHHHH
Confidence 555678899999999999999999999885 899999864 23333322332111111234433333333333
Q ss_pred -------CCcEEEEecCCCCCCC----CChh---HHHhhhHHHHHHHHH----HHHhhc--CCCcEEEEEeCChhhHHHH
Q 019990 81 -------DVNIAVMVGGFPRKEG----MERK---DVMSKNVSIYKAQAS----ALEKHA--APNCKVLVVANPANTNALI 140 (332)
Q Consensus 81 -------~aDiVi~~ag~~~~~~----~~~~---~~~~~N~~~~~~i~~----~i~~~~--~~~~~viv~snp~~~~~~~ 140 (332)
..|++||.||.....+ .+.+ ..++.|+.....+.+ .+.+.. ...++++++|+....
T Consensus 76 ~~~~~~g~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~~~~~~~iv~isS~~~~---- 151 (261)
T 3n74_A 76 AALSKFGKVDILVNNAGIGHKPQNAELVEPEEFDRIVGVNVRGVYLMTSKLIPHFKENGAKGQECVILNVASTGAG---- 151 (261)
T ss_dssp HHHHHHSCCCEEEECCCCCCCSCCGGGSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHTTCCEEEEEECCTTTT----
T ss_pred HHHHhcCCCCEEEECCccCCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCCCCCeEEEEeCchhhc----
Confidence 7899999999753211 1222 245667666544444 444331 013456777754321
Q ss_pred HHHHCCCCCCCcEEEeecccHHHHHHHHHHHcCCCCCCeee
Q 019990 141 LKEFAPSIPAKNITCLTRLDHNRAMGQISERLKVHVSDVKN 181 (332)
Q Consensus 141 ~~~~~~~~~~~~i~~~t~l~~~r~~~~~a~~~~v~~~~v~~ 181 (332)
.+.+....|+.+|.....+.+.+++.+. +..|+.
T Consensus 152 -----~~~~~~~~Y~asKaa~~~~~~~la~e~~--~~gi~v 185 (261)
T 3n74_A 152 -----RPRPNLAWYNATKGWVVSVTKALAIELA--PAKIRV 185 (261)
T ss_dssp -----SCCTTCHHHHHHHHHHHHHHHHHHHHHG--GGTEEE
T ss_pred -----CCCCCccHHHHHHHHHHHHHHHHHHHhh--hcCcEE
Confidence 1233333578888888888888888864 345664
|
| >2wyu_A Enoyl-[acyl carrier protein] reductase; oxidoreductase, fatty acid biosynthesis, oxidation reduction; 1.50A {Thermus thermophilus} PDB: 1ulu_A 2wyv_A* 2wyw_A* 2yw9_A* | Back alignment and structure |
|---|
Probab=98.79 E-value=2.7e-09 Score=94.63 Aligned_cols=150 Identities=13% Similarity=0.144 Sum_probs=93.5
Q ss_pred CCcEEEEEcCC--ChhHHHHHHHHHhcccCCCCCCeEEEEEecccchhhhhhhHhhhhhh--c-cCCccceEEeCCHHHH
Q 019990 4 NPLRVLVTGAA--GQIGYALVPMIARGIMLGPDQPVILHMLDIEPAAEALNGVKMELIDA--A-FPLLKGVVATTDVVEA 78 (332)
Q Consensus 4 ~~~kI~VtGaa--G~IGs~l~~~L~~~~~~~~~~~~~i~l~D~~~~~~~~~~~~~dl~~~--~-~~~~~~v~~~~~~~~a 78 (332)
+.++|+||||+ |+||++++..|++.|. +|+++|++.. ......++... . .....|++...++.++
T Consensus 7 ~~k~vlVTGas~~~gIG~~ia~~l~~~G~-------~V~~~~r~~~---~~~~~~~l~~~~~~~~~~~~D~~~~~~v~~~ 76 (261)
T 2wyu_A 7 SGKKALVMGVTNQRSLGFAIAAKLKEAGA-------EVALSYQAER---LRPEAEKLAEALGGALLFRADVTQDEELDAL 76 (261)
T ss_dssp TTCEEEEESCCSSSSHHHHHHHHHHHHTC-------EEEEEESCGG---GHHHHHHHHHHTTCCEEEECCTTCHHHHHHH
T ss_pred CCCEEEEECCCCCCcHHHHHHHHHHHCCC-------EEEEEcCCHH---HHHHHHHHHHhcCCcEEEECCCCCHHHHHHH
Confidence 45789999998 9999999999999885 8999987641 11122222211 0 1112344433334333
Q ss_pred hC-------CCcEEEEecCCCCC-----C--CCCh---hHHHhhhHHHHHHHHHHHHhhcCCCcEEEEEeCChhhHHHHH
Q 019990 79 CK-------DVNIAVMVGGFPRK-----E--GMER---KDVMSKNVSIYKAQASALEKHAAPNCKVLVVANPANTNALIL 141 (332)
Q Consensus 79 ~~-------~aDiVi~~ag~~~~-----~--~~~~---~~~~~~N~~~~~~i~~~i~~~~~~~~~viv~snp~~~~~~~~ 141 (332)
++ ..|++||.||.... + ..+. ...+..|+.....+.+++..+-.+.+++|++|+....
T Consensus 77 ~~~~~~~~g~iD~lv~~Ag~~~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~g~iv~isS~~~~----- 151 (261)
T 2wyu_A 77 FAGVKEAFGGLDYLVHAIAFAPREAMEGRYIDTRRQDWLLALEVSAYSLVAVARRAEPLLREGGGIVTLTYYASE----- 151 (261)
T ss_dssp HHHHHHHHSSEEEEEECCCCCCHHHHSSCGGGCCHHHHHHHHHHHTHHHHHHHHHHTTTEEEEEEEEEEECGGGT-----
T ss_pred HHHHHHHcCCCCEEEECCCCCCcccCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHhccCCEEEEEeccccc-----
Confidence 33 68999999997431 1 1222 2356788888888888877653123577777753221
Q ss_pred HHHCCCCCCCcEEEeecccHHHHHHHHHHHc
Q 019990 142 KEFAPSIPAKNITCLTRLDHNRAMGQISERL 172 (332)
Q Consensus 142 ~~~~~~~~~~~i~~~t~l~~~r~~~~~a~~~ 172 (332)
.+.+....|+.+|.....+.+.+++.+
T Consensus 152 ----~~~~~~~~Y~asK~a~~~~~~~la~e~ 178 (261)
T 2wyu_A 152 ----KVVPKYNVMAIAKAALEASVRYLAYEL 178 (261)
T ss_dssp ----SBCTTCHHHHHHHHHHHHHHHHHHHHH
T ss_pred ----CCCCCchHHHHHHHHHHHHHHHHHHHH
Confidence 123333457778888888888888876
|
| >3orf_A Dihydropteridine reductase; alpha-beta-alpha sandwich, rossmann fold, oxidoreductase (AC NADH), NADH binding, oxidoreductase; HET: NAD; 2.16A {Dictyostelium discoideum} | Back alignment and structure |
|---|
Probab=98.79 E-value=4e-09 Score=93.03 Aligned_cols=151 Identities=11% Similarity=0.031 Sum_probs=96.1
Q ss_pred CcEEEEEcCCChhHHHHHHHHHhcccCCCCCCeEEEEEecccchhhhhhhHhhhhhhccCCccceEEeCCHHHH------
Q 019990 5 PLRVLVTGAAGQIGYALVPMIARGIMLGPDQPVILHMLDIEPAAEALNGVKMELIDAAFPLLKGVVATTDVVEA------ 78 (332)
Q Consensus 5 ~~kI~VtGaaG~IGs~l~~~L~~~~~~~~~~~~~i~l~D~~~~~~~~~~~~~dl~~~~~~~~~~v~~~~~~~~a------ 78 (332)
+++|+||||+|+||++++..|++.|. +|+++|++... .... . ...++....++.++
T Consensus 22 ~k~vlITGas~gIG~~la~~l~~~G~-------~V~~~~r~~~~--~~~~-----~----~~~d~~d~~~v~~~~~~~~~ 83 (251)
T 3orf_A 22 SKNILVLGGSGALGAEVVKFFKSKSW-------NTISIDFRENP--NADH-----S----FTIKDSGEEEIKSVIEKINS 83 (251)
T ss_dssp CCEEEEETTTSHHHHHHHHHHHHTTC-------EEEEEESSCCT--TSSE-----E----EECSCSSHHHHHHHHHHHHT
T ss_pred CCEEEEECCCCHHHHHHHHHHHHCCC-------EEEEEeCCccc--cccc-----c----eEEEeCCHHHHHHHHHHHHH
Confidence 46799999999999999999999886 89999986421 1110 0 00112211222222
Q ss_pred -hCCCcEEEEecCCCCCC----CCCh---hHHHhhhHHHHHHHHHHHHhhcCCCcEEEEEeCChhhHHHHHHHHCCCCCC
Q 019990 79 -CKDVNIAVMVGGFPRKE----GMER---KDVMSKNVSIYKAQASALEKHAAPNCKVLVVANPANTNALILKEFAPSIPA 150 (332)
Q Consensus 79 -~~~aDiVi~~ag~~~~~----~~~~---~~~~~~N~~~~~~i~~~i~~~~~~~~~viv~snp~~~~~~~~~~~~~~~~~ 150 (332)
+...|+||+.||..... ..+. ...++.|+.....+.+++..+-.+.+++|++|+.... .+.+.
T Consensus 84 ~~g~iD~li~~Ag~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~g~iv~isS~~~~---------~~~~~ 154 (251)
T 3orf_A 84 KSIKVDTFVCAAGGWSGGNASSDEFLKSVKGMIDMNLYSAFASAHIGAKLLNQGGLFVLTGASAAL---------NRTSG 154 (251)
T ss_dssp TTCCEEEEEECCCCCCCBCTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEECCGGGG---------SCCTT
T ss_pred HcCCCCEEEECCccCCCCCcccccCHHHHHHHHHHHhHHHHHHHHHHHHhhccCCEEEEEechhhc---------cCCCC
Confidence 23569999999974221 1121 2356788888888888887764234577777764321 23344
Q ss_pred CcEEEeecccHHHHHHHHHHHcCCCCCCeeee
Q 019990 151 KNITCLTRLDHNRAMGQISERLKVHVSDVKNV 182 (332)
Q Consensus 151 ~~i~~~t~l~~~r~~~~~a~~~~v~~~~v~~~ 182 (332)
...|+.+|.....+...+++.++..+..|+..
T Consensus 155 ~~~Y~~sKaa~~~~~~~la~e~~~~~~gi~v~ 186 (251)
T 3orf_A 155 MIAYGATKAATHHIIKDLASENGGLPAGSTSL 186 (251)
T ss_dssp BHHHHHHHHHHHHHHHHHTSTTSSSCTTCEEE
T ss_pred CchhHHHHHHHHHHHHHHHHHhcccCCCcEEE
Confidence 44678888888888888888776556677743
|
| >4eso_A Putative oxidoreductase; NADP, structural genomics, PSI-biology, NEW structural genomics research consortium, nysgrc; HET: MSE NAP; 1.91A {Sinorhizobium meliloti} PDB: 3vc7_A | Back alignment and structure |
|---|
Probab=98.79 E-value=4.2e-09 Score=93.16 Aligned_cols=158 Identities=9% Similarity=0.118 Sum_probs=98.8
Q ss_pred CCcEEEEEcCCChhHHHHHHHHHhcccCCCCCCeEEEEEecccchhhhhhhHhhhhhhccCCccceEEeCCHHH------
Q 019990 4 NPLRVLVTGAAGQIGYALVPMIARGIMLGPDQPVILHMLDIEPAAEALNGVKMELIDAAFPLLKGVVATTDVVE------ 77 (332)
Q Consensus 4 ~~~kI~VtGaaG~IGs~l~~~L~~~~~~~~~~~~~i~l~D~~~~~~~~~~~~~dl~~~~~~~~~~v~~~~~~~~------ 77 (332)
+.++++||||+|+||.+++..|++.|. +|++.|++. +.+.....++.........|++...++.+
T Consensus 7 ~gk~~lVTGas~gIG~a~a~~l~~~G~-------~V~~~~r~~--~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~ 77 (255)
T 4eso_A 7 QGKKAIVIGGTHGMGLATVRRLVEGGA-------EVLLTGRNE--SNIARIREEFGPRVHALRSDIADLNEIAVLGAAAG 77 (255)
T ss_dssp TTCEEEEETCSSHHHHHHHHHHHHTTC-------EEEEEESCH--HHHHHHHHHHGGGEEEEECCTTCHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHCCC-------EEEEEeCCH--HHHHHHHHHhCCcceEEEccCCCHHHHHHHHHHHH
Confidence 357899999999999999999999886 899999864 23332222221111111234433333322
Q ss_pred -HhCCCcEEEEecCCCCCCC---CCh---hHHHhhhHHHHHHHHHHHHhhcCCCcEEEEEeCChhhHHHHHHHHCCCCCC
Q 019990 78 -ACKDVNIAVMVGGFPRKEG---MER---KDVMSKNVSIYKAQASALEKHAAPNCKVLVVANPANTNALILKEFAPSIPA 150 (332)
Q Consensus 78 -a~~~aDiVi~~ag~~~~~~---~~~---~~~~~~N~~~~~~i~~~i~~~~~~~~~viv~snp~~~~~~~~~~~~~~~~~ 150 (332)
.+...|++|+.||...... .+. ...++.|+.....+.+++..+-.+.+++|++|+.... .+.+.
T Consensus 78 ~~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~g~iv~isS~~~~---------~~~~~ 148 (255)
T 4eso_A 78 QTLGAIDLLHINAGVSELEPFDQVSEASYDRQFAVNTKGAFFTVQRLTPLIREGGSIVFTSSVADE---------GGHPG 148 (255)
T ss_dssp HHHSSEEEEEECCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHGGGEEEEEEEEEECCGGGS---------SBCTT
T ss_pred HHhCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHhcCCEEEEECChhhc---------CCCCC
Confidence 2347899999999753211 122 2356788888888888887653234577777764321 22344
Q ss_pred CcEEEeecccHHHHHHHHHHHcCCCCCCeee
Q 019990 151 KNITCLTRLDHNRAMGQISERLKVHVSDVKN 181 (332)
Q Consensus 151 ~~i~~~t~l~~~r~~~~~a~~~~v~~~~v~~ 181 (332)
...|+.+|.....+.+.++..++ +..|+.
T Consensus 149 ~~~Y~asKaa~~~~~~~la~e~~--~~gi~v 177 (255)
T 4eso_A 149 MSVYSASKAALVSFASVLAAELL--PRGIRV 177 (255)
T ss_dssp BHHHHHHHHHHHHHHHHHHHHTG--GGTCEE
T ss_pred chHHHHHHHHHHHHHHHHHHHHh--hhCcEE
Confidence 44678888888888888888864 334553
|
| >2q2v_A Beta-D-hydroxybutyrate dehydrogenase; SDR, oxidoreductase; HET: NAD; 1.90A {Pseudomonas putida} PDB: 2q2q_A* 2q2w_A | Back alignment and structure |
|---|
Probab=98.79 E-value=1.9e-08 Score=88.72 Aligned_cols=154 Identities=12% Similarity=0.104 Sum_probs=94.4
Q ss_pred CCcEEEEEcCCChhHHHHHHHHHhcccCCCCCCeEEEEEecccchhhhhhhHhhhhhhc--c-CCccceEEeCCHHHHhC
Q 019990 4 NPLRVLVTGAAGQIGYALVPMIARGIMLGPDQPVILHMLDIEPAAEALNGVKMELIDAA--F-PLLKGVVATTDVVEACK 80 (332)
Q Consensus 4 ~~~kI~VtGaaG~IGs~l~~~L~~~~~~~~~~~~~i~l~D~~~~~~~~~~~~~dl~~~~--~-~~~~~v~~~~~~~~a~~ 80 (332)
+.++|+||||+|+||.+++..|++.|. +|++.|++.. .....++.... . ....|++...++.++++
T Consensus 3 ~~k~vlVTGas~giG~~ia~~l~~~G~-------~V~~~~r~~~----~~~~~~l~~~~~~~~~~~~D~~~~~~v~~~~~ 71 (255)
T 2q2v_A 3 KGKTALVTGSTSGIGLGIAQVLARAGA-------NIVLNGFGDP----APALAEIARHGVKAVHHPADLSDVAQIEALFA 71 (255)
T ss_dssp TTCEEEESSCSSHHHHHHHHHHHHTTC-------EEEEECSSCC----HHHHHHHHTTSCCEEEECCCTTSHHHHHHHHH
T ss_pred CCCEEEEeCCCcHHHHHHHHHHHHCCC-------EEEEEeCCch----HHHHHHHHhcCCceEEEeCCCCCHHHHHHHHH
Confidence 457899999999999999999999885 8999988643 11112222110 0 11234443334444444
Q ss_pred -------CCcEEEEecCCCCCC---CCCh---hHHHhhhHH----HHHHHHHHHHhhcCCCcEEEEEeCChhhHHHHHHH
Q 019990 81 -------DVNIAVMVGGFPRKE---GMER---KDVMSKNVS----IYKAQASALEKHAAPNCKVLVVANPANTNALILKE 143 (332)
Q Consensus 81 -------~aDiVi~~ag~~~~~---~~~~---~~~~~~N~~----~~~~i~~~i~~~~~~~~~viv~snp~~~~~~~~~~ 143 (332)
+.|++||.||..... ..+. ...+..|+. .++.+++.+++.+ ..++|++|+....
T Consensus 72 ~~~~~~g~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~N~~~~~~~~~~~~~~~~~~~--~g~iv~isS~~~~------- 142 (255)
T 2q2v_A 72 LAEREFGGVDILVNNAGIQHVAPVEQFPLESWDKIIALNLSAVFHGTRLALPGMRARN--WGRIINIASVHGL------- 142 (255)
T ss_dssp HHHHHHSSCSEEEECCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHTT--CEEEEEECCGGGT-------
T ss_pred HHHHHcCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcC--CcEEEEEcCchhc-------
Confidence 799999999974321 1122 235667776 4455555565543 3577777764321
Q ss_pred HCCCCCCCcEEEeecccHHHHHHHHHHHcCCCCCCeee
Q 019990 144 FAPSIPAKNITCLTRLDHNRAMGQISERLKVHVSDVKN 181 (332)
Q Consensus 144 ~~~~~~~~~i~~~t~l~~~r~~~~~a~~~~v~~~~v~~ 181 (332)
.+.+....|+.+|.....+.+.+++.+. +..|+.
T Consensus 143 --~~~~~~~~Y~~sK~a~~~~~~~la~e~~--~~gi~v 176 (255)
T 2q2v_A 143 --VGSTGKAAYVAAKHGVVGLTKVVGLETA--TSNVTC 176 (255)
T ss_dssp --SCCTTBHHHHHHHHHHHHHHHHHHHHTT--TSSEEE
T ss_pred --cCCCCchhHHHHHHHHHHHHHHHHHHhc--ccCcEE
Confidence 1233334577788888888888888865 455664
|
| >2fwm_X 2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase; enterobactin, rossman fold, chorismate metabolism, short-CHA oxidoreductase, tetramer; 2.00A {Escherichia coli} | Back alignment and structure |
|---|
Probab=98.79 E-value=7.9e-09 Score=90.99 Aligned_cols=145 Identities=16% Similarity=0.128 Sum_probs=89.9
Q ss_pred CCCCCcEEEEEcCCChhHHHHHHHHHhcccCCCCCCeEEEEEecccchhhhhhhHhhhhhhccCCccceEEeCCHHHHh-
Q 019990 1 MAKNPLRVLVTGAAGQIGYALVPMIARGIMLGPDQPVILHMLDIEPAAEALNGVKMELIDAAFPLLKGVVATTDVVEAC- 79 (332)
Q Consensus 1 m~~~~~kI~VtGaaG~IGs~l~~~L~~~~~~~~~~~~~i~l~D~~~~~~~~~~~~~dl~~~~~~~~~~v~~~~~~~~a~- 79 (332)
|+.+.++|+||||+|+||++++..|++.|. +|+++|++... .. .. ......|++...++.+++
T Consensus 3 m~l~~k~vlVTGas~giG~~ia~~l~~~G~-------~V~~~~r~~~~---~~----~~--~~~~~~D~~d~~~~~~~~~ 66 (250)
T 2fwm_X 3 MDFSGKNVWVTGAGKGIGYATALAFVEAGA-------KVTGFDQAFTQ---EQ----YP--FATEVMDVADAAQVAQVCQ 66 (250)
T ss_dssp CCCTTCEEEEESTTSHHHHHHHHHHHHTTC-------EEEEEESCCCS---SC----CS--SEEEECCTTCHHHHHHHHH
T ss_pred CCCCCCEEEEeCCCcHHHHHHHHHHHHCCC-------EEEEEeCchhh---hc----CC--ceEEEcCCCCHHHHHHHHH
Confidence 555667899999999999999999999885 89999875421 10 00 000112333333333333
Q ss_pred ------CCCcEEEEecCCCCCC---CCCh---hHHHhhhHHHHHHHHHHH----HhhcCCCcEEEEEeCChhhHHHHHHH
Q 019990 80 ------KDVNIAVMVGGFPRKE---GMER---KDVMSKNVSIYKAQASAL----EKHAAPNCKVLVVANPANTNALILKE 143 (332)
Q Consensus 80 ------~~aDiVi~~ag~~~~~---~~~~---~~~~~~N~~~~~~i~~~i----~~~~~~~~~viv~snp~~~~~~~~~~ 143 (332)
.+.|++|+.||..... ..+. ...+..|+.....+.+++ ++.. ..++|++|+....
T Consensus 67 ~~~~~~g~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~m~~~~--~g~iv~isS~~~~------- 137 (250)
T 2fwm_X 67 RLLAETERLDALVNAAGILRMGATDQLSKEDWQQTFAVNVGGAFNLFQQTMNQFRRQR--GGAIVTVASDAAH------- 137 (250)
T ss_dssp HHHHHCSCCCEEEECCCCCCCCCTTTSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHT--CCEEEEECCGGGT-------
T ss_pred HHHHHcCCCCEEEECCCcCCCCCcccCCHHHHHHHHHHccHHHHHHHHHHHHHHHhcC--CCEEEEECchhhC-------
Confidence 3789999999974321 1222 235667877666666555 4442 3577777763321
Q ss_pred HCCCCCCCcEEEeecccHHHHHHHHHHHc
Q 019990 144 FAPSIPAKNITCLTRLDHNRAMGQISERL 172 (332)
Q Consensus 144 ~~~~~~~~~i~~~t~l~~~r~~~~~a~~~ 172 (332)
.+.+....|+.+|.....+.+.+++.+
T Consensus 138 --~~~~~~~~Y~~sK~a~~~~~~~la~e~ 164 (250)
T 2fwm_X 138 --TPRIGMSAYGASKAALKSLALSVGLEL 164 (250)
T ss_dssp --SCCTTCHHHHHHHHHHHHHHHHHHHHH
T ss_pred --CCCCCCchHHHHHHHHHHHHHHHHHHh
Confidence 123344467778888888888888776
|
| >3rwb_A TPLDH, pyridoxal 4-dehydrogenase; short chain dehydrogenase/reductase, 4-pyridoxola NAD+, oxidoreductase; HET: NAD 4PL; 1.70A {Mesorhizobium loti} PDB: 3ndr_A* 3nug_A* | Back alignment and structure |
|---|
Probab=98.79 E-value=3.8e-08 Score=86.49 Aligned_cols=157 Identities=15% Similarity=0.120 Sum_probs=97.2
Q ss_pred CCcEEEEEcCCChhHHHHHHHHHhcccCCCCCCeEEEEEecccchhhhhhhHhhhhhhccCCccceEEeCCHHHHhC---
Q 019990 4 NPLRVLVTGAAGQIGYALVPMIARGIMLGPDQPVILHMLDIEPAAEALNGVKMELIDAAFPLLKGVVATTDVVEACK--- 80 (332)
Q Consensus 4 ~~~kI~VtGaaG~IGs~l~~~L~~~~~~~~~~~~~i~l~D~~~~~~~~~~~~~dl~~~~~~~~~~v~~~~~~~~a~~--- 80 (332)
+.++++||||+|+||.+++..|++.|. +|++.|++. +.+.....++.........|++...++.+.++
T Consensus 5 ~gk~vlVTGas~gIG~a~a~~l~~~G~-------~V~~~~r~~--~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~ 75 (247)
T 3rwb_A 5 AGKTALVTGAAQGIGKAIAARLAADGA-------TVIVSDINA--EGAKAAAASIGKKARAIAADISDPGSVKALFAEIQ 75 (247)
T ss_dssp TTCEEEEETTTSHHHHHHHHHHHHTTC-------EEEEECSCH--HHHHHHHHHHCTTEEECCCCTTCHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHCCC-------EEEEEeCCH--HHHHHHHHHhCCceEEEEcCCCCHHHHHHHHHHHH
Confidence 467899999999999999999999885 899999864 23333222221111112234544434433333
Q ss_pred ----CCcEEEEecCCCCCC---CCCh---hHHHhhhHHHHHHHHHH----HHhhcCCCcEEEEEeCChhhHHHHHHHHCC
Q 019990 81 ----DVNIAVMVGGFPRKE---GMER---KDVMSKNVSIYKAQASA----LEKHAAPNCKVLVVANPANTNALILKEFAP 146 (332)
Q Consensus 81 ----~aDiVi~~ag~~~~~---~~~~---~~~~~~N~~~~~~i~~~----i~~~~~~~~~viv~snp~~~~~~~~~~~~~ 146 (332)
..|++|+.||..... ..+. ...++.|+.....+.++ +++.+ ...++|++|+.... .
T Consensus 76 ~~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~-~~g~iv~isS~~~~---------~ 145 (247)
T 3rwb_A 76 ALTGGIDILVNNASIVPFVAWDDVDLDHWRKIIDVNLTGTFIVTRAGTDQMRAAG-KAGRVISIASNTFF---------A 145 (247)
T ss_dssp HHHSCCSEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHT-CCEEEEEECCTHHH---------H
T ss_pred HHCCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHcC-CCcEEEEECchhhc---------c
Confidence 789999999974321 1222 23567787666555555 55543 34677777764321 1
Q ss_pred CCCCCcEEEeecccHHHHHHHHHHHcCCCCCCeee
Q 019990 147 SIPAKNITCLTRLDHNRAMGQISERLKVHVSDVKN 181 (332)
Q Consensus 147 ~~~~~~i~~~t~l~~~r~~~~~a~~~~v~~~~v~~ 181 (332)
+.+....|+.+|.....+.+.++..++ +..|+.
T Consensus 146 ~~~~~~~Y~asKaa~~~~~~~la~e~~--~~gi~v 178 (247)
T 3rwb_A 146 GTPNMAAYVAAKGGVIGFTRALATELG--KYNITA 178 (247)
T ss_dssp TCTTCHHHHHHHHHHHHHHHHHHHHHG--GGTEEE
T ss_pred CCCCchhhHHHHHHHHHHHHHHHHHhh--hcCeEE
Confidence 234444678888888888888888864 445664
|
| >3lyl_A 3-oxoacyl-(acyl-carrier-protein) reductase; alpha and beta protein, NAD(P)-binding rossmann fold, csgid, oxidoreductase; 1.95A {Francisella tularensis subsp} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=98.78 E-value=9.8e-09 Score=90.03 Aligned_cols=161 Identities=14% Similarity=0.184 Sum_probs=98.5
Q ss_pred CCCCCcEEEEEcCCChhHHHHHHHHHhcccCCCCCCeEEEEEecccchhhhhhhHhhhhhhcc---CCccceEEeCCHHH
Q 019990 1 MAKNPLRVLVTGAAGQIGYALVPMIARGIMLGPDQPVILHMLDIEPAAEALNGVKMELIDAAF---PLLKGVVATTDVVE 77 (332)
Q Consensus 1 m~~~~~kI~VtGaaG~IGs~l~~~L~~~~~~~~~~~~~i~l~D~~~~~~~~~~~~~dl~~~~~---~~~~~v~~~~~~~~ 77 (332)
|+.+.++++||||+|+||++++..|++.|. +|++.+++. +.+.....++..... ....|++...++.+
T Consensus 1 m~l~~k~vlITGas~gIG~~~a~~l~~~G~-------~v~~~~r~~--~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~ 71 (247)
T 3lyl_A 1 MSLNEKVALVTGASRGIGFEVAHALASKGA-------TVVGTATSQ--ASAEKFENSMKEKGFKARGLVLNISDIESIQN 71 (247)
T ss_dssp CTTTTCEEEESSCSSHHHHHHHHHHHHTTC-------EEEEEESSH--HHHHHHHHHHHHTTCCEEEEECCTTCHHHHHH
T ss_pred CCCCCCEEEEECCCChHHHHHHHHHHHCCC-------EEEEEeCCH--HHHHHHHHHHHhcCCceEEEEecCCCHHHHHH
Confidence 777788999999999999999999999885 899999864 233333333322111 11234433333333
Q ss_pred Hh-------CCCcEEEEecCCCCCC---CCCh---hHHHhhhHHHHHHHHHHHHhhc--CCCcEEEEEeCChhhHHHHHH
Q 019990 78 AC-------KDVNIAVMVGGFPRKE---GMER---KDVMSKNVSIYKAQASALEKHA--APNCKVLVVANPANTNALILK 142 (332)
Q Consensus 78 a~-------~~aDiVi~~ag~~~~~---~~~~---~~~~~~N~~~~~~i~~~i~~~~--~~~~~viv~snp~~~~~~~~~ 142 (332)
.+ ...|++||.||..... ..+. ...++.|+.....+.+.+...- ...+++|++|+....
T Consensus 72 ~~~~~~~~~~~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~g~iv~isS~~~~------ 145 (247)
T 3lyl_A 72 FFAEIKAENLAIDILVNNAGITRDNLMMRMSEDEWQSVINTNLSSIFRMSKECVRGMMKKRWGRIISIGSVVGS------ 145 (247)
T ss_dssp HHHHHHHTTCCCSEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCTHHH------
T ss_pred HHHHHHHHcCCCCEEEECCCCCCCCchhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCeEEEEEcchhhc------
Confidence 33 2579999999975321 1122 2356777776666555543321 124577777764321
Q ss_pred HHCCCCCCCcEEEeecccHHHHHHHHHHHcCCCCCCeee
Q 019990 143 EFAPSIPAKNITCLTRLDHNRAMGQISERLKVHVSDVKN 181 (332)
Q Consensus 143 ~~~~~~~~~~i~~~t~l~~~r~~~~~a~~~~v~~~~v~~ 181 (332)
.+.+....|+.+|.....+.+.+++.+. +..|+.
T Consensus 146 ---~~~~~~~~Y~~sK~a~~~~~~~la~e~~--~~gi~v 179 (247)
T 3lyl_A 146 ---AGNPGQTNYCAAKAGVIGFSKSLAYEVA--SRNITV 179 (247)
T ss_dssp ---HCCTTCHHHHHHHHHHHHHHHHHHHHHG--GGTEEE
T ss_pred ---cCCCCcHHHHHHHHHHHHHHHHHHHHHH--HcCeEE
Confidence 1234444678888888888888888764 345664
|
| >3f9i_A 3-oxoacyl-[acyl-carrier-protein] reductase; 3-ketoacyl-(acyl-carrier-protein) reductase, FAT biosynthesis, lipid synthesis, NADP; 2.25A {Rickettsia prowazekii} SCOP: c.2.1.0 | Back alignment and structure |
|---|
Probab=98.78 E-value=1.8e-08 Score=88.50 Aligned_cols=156 Identities=12% Similarity=0.132 Sum_probs=92.7
Q ss_pred CCcEEEEEcCCChhHHHHHHHHHhcccCCCCCCeEEEEEecccchhhhhhhHhhhhhhccCCccceEEeCCHHHHhC---
Q 019990 4 NPLRVLVTGAAGQIGYALVPMIARGIMLGPDQPVILHMLDIEPAAEALNGVKMELIDAAFPLLKGVVATTDVVEACK--- 80 (332)
Q Consensus 4 ~~~kI~VtGaaG~IGs~l~~~L~~~~~~~~~~~~~i~l~D~~~~~~~~~~~~~dl~~~~~~~~~~v~~~~~~~~a~~--- 80 (332)
+.++|+||||+|+||++++..|++.|. +|++.|++. +.+.....++.........|+....++.+.++
T Consensus 13 ~~k~vlVTGas~gIG~~~a~~l~~~G~-------~V~~~~r~~--~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~ 83 (249)
T 3f9i_A 13 TGKTSLITGASSGIGSAIARLLHKLGS-------KVIISGSNE--EKLKSLGNALKDNYTIEVCNLANKEECSNLISKTS 83 (249)
T ss_dssp TTCEEEETTTTSHHHHHHHHHHHHTTC-------EEEEEESCH--HHHHHHHHHHCSSEEEEECCTTSHHHHHHHHHTCS
T ss_pred CCCEEEEECCCChHHHHHHHHHHHCCC-------EEEEEcCCH--HHHHHHHHHhccCccEEEcCCCCHHHHHHHHHhcC
Confidence 467899999999999999999999885 899999853 23333222222111111123333333333343
Q ss_pred CCcEEEEecCCCCCC------CCChhHHHhhhHHHHHHHHHHH----HhhcCCCcEEEEEeCChhhHHHHHHHHCCCCCC
Q 019990 81 DVNIAVMVGGFPRKE------GMERKDVMSKNVSIYKAQASAL----EKHAAPNCKVLVVANPANTNALILKEFAPSIPA 150 (332)
Q Consensus 81 ~aDiVi~~ag~~~~~------~~~~~~~~~~N~~~~~~i~~~i----~~~~~~~~~viv~snp~~~~~~~~~~~~~~~~~ 150 (332)
+.|++||.||..... ...-...++.|+.....+.+.+ .+. ..+++|++|+.... .+.+.
T Consensus 84 ~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~--~~g~iv~isS~~~~---------~~~~~ 152 (249)
T 3f9i_A 84 NLDILVCNAGITSDTLAIRMKDQDFDKVIDINLKANFILNREAIKKMIQK--RYGRIINISSIVGI---------AGNPG 152 (249)
T ss_dssp CCSEEEECCC-------------CHHHHHHHHTHHHHHHHHHHHHHHHHH--TCEEEEEECCCCC-----------CCSC
T ss_pred CCCEEEECCCCCCCCccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhC--CCcEEEEEccHHhc---------cCCCC
Confidence 689999999874311 1122346677876665555544 333 24577777764321 12344
Q ss_pred CcEEEeecccHHHHHHHHHHHcCCCCCCeee
Q 019990 151 KNITCLTRLDHNRAMGQISERLKVHVSDVKN 181 (332)
Q Consensus 151 ~~i~~~t~l~~~r~~~~~a~~~~v~~~~v~~ 181 (332)
...|+.+|.....+...+++.++ +..++.
T Consensus 153 ~~~Y~~sK~a~~~~~~~la~e~~--~~gi~v 181 (249)
T 3f9i_A 153 QANYCASKAGLIGMTKSLSYEVA--TRGITV 181 (249)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHHG--GGTEEE
T ss_pred CchhHHHHHHHHHHHHHHHHHHH--HcCcEE
Confidence 44678888888888888888764 345664
|
| >3l6e_A Oxidoreductase, short-chain dehydrogenase/reducta; structural genomics, PSI-2, protein structure initiative; 2.30A {Aeromonas hydrophila subsp} SCOP: c.2.1.0 | Back alignment and structure |
|---|
Probab=98.78 E-value=2.3e-08 Score=87.32 Aligned_cols=158 Identities=16% Similarity=0.134 Sum_probs=94.5
Q ss_pred CcEEEEEcCCChhHHHHHHHHHhcccCCCCCCeEEEEEecccchhhhhhhHhhhhhhccCCccceEEeCCHHHHh-----
Q 019990 5 PLRVLVTGAAGQIGYALVPMIARGIMLGPDQPVILHMLDIEPAAEALNGVKMELIDAAFPLLKGVVATTDVVEAC----- 79 (332)
Q Consensus 5 ~~kI~VtGaaG~IGs~l~~~L~~~~~~~~~~~~~i~l~D~~~~~~~~~~~~~dl~~~~~~~~~~v~~~~~~~~a~----- 79 (332)
+++|+||||+|+||++++..|++.|. +|++.|++. +.+.....++.........|++...++.+++
T Consensus 3 ~k~vlVTGas~GIG~a~a~~l~~~G~-------~V~~~~r~~--~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~ 73 (235)
T 3l6e_A 3 LGHIIVTGAGSGLGRALTIGLVERGH-------QVSMMGRRY--QRLQQQELLLGNAVIGIVADLAHHEDVDVAFAAAVE 73 (235)
T ss_dssp CCEEEEESTTSHHHHHHHHHHHHTTC-------EEEEEESCH--HHHHHHHHHHGGGEEEEECCTTSHHHHHHHHHHHHH
T ss_pred CCEEEEECCCCHHHHHHHHHHHHCCC-------EEEEEECCH--HHHHHHHHHhcCCceEEECCCCCHHHHHHHHHHHHH
Confidence 46899999999999999999999885 899999864 2333333333211111123443333333333
Q ss_pred --CCCcEEEEecCCCCCC---CCCh---hHHHhhhHHHHHHHHHHHHhhcC-CCcEEEEEeCChhhHHHHHHHHCCCCCC
Q 019990 80 --KDVNIAVMVGGFPRKE---GMER---KDVMSKNVSIYKAQASALEKHAA-PNCKVLVVANPANTNALILKEFAPSIPA 150 (332)
Q Consensus 80 --~~aDiVi~~ag~~~~~---~~~~---~~~~~~N~~~~~~i~~~i~~~~~-~~~~viv~snp~~~~~~~~~~~~~~~~~ 150 (332)
...|++|+.||..... ..+. ...++.|+.....+.+.+...-. ...++|++|+.... .+.+.
T Consensus 74 ~~g~id~lvnnAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~~iv~isS~~~~---------~~~~~ 144 (235)
T 3l6e_A 74 WGGLPELVLHCAGTGEFGPVGVYTAEQIRRVMESNLVSTILVAQQTVRLIGERGGVLANVLSSAAQ---------VGKAN 144 (235)
T ss_dssp HHCSCSEEEEECCCC------CCCHHHHHHHHHHHHHHHHHHHHHHHHHHTTTCEEEEEECCEECC---------SSCSS
T ss_pred hcCCCcEEEECCCCCCCCChHhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCEEEEEeCHHhc---------CCCCC
Confidence 3679999999974321 1222 23567788777666666544321 12366777753321 12222
Q ss_pred CcEEEeecccHHHHHHHHHHHcCCCCCCeeee
Q 019990 151 KNITCLTRLDHNRAMGQISERLKVHVSDVKNV 182 (332)
Q Consensus 151 ~~i~~~t~l~~~r~~~~~a~~~~v~~~~v~~~ 182 (332)
...|+.+|.....+.+.+++.++ +..|+..
T Consensus 145 ~~~Y~asKaa~~~~~~~la~e~~--~~gi~v~ 174 (235)
T 3l6e_A 145 ESLYCASKWGMRGFLESLRAELK--DSPLRLV 174 (235)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTT--TSSEEEE
T ss_pred CcHHHHHHHHHHHHHHHHHHHhh--ccCCEEE
Confidence 23567778778888888888765 4556643
|
| >3grp_A 3-oxoacyl-(acyl carrierprotein) reductase; structural genomics, oxidoreductase, S structural genomics center for infectious disease, ssgcid; 2.09A {Bartonella henselae} PDB: 3enn_A 3emk_A | Back alignment and structure |
|---|
Probab=98.78 E-value=8.1e-09 Score=91.97 Aligned_cols=156 Identities=15% Similarity=0.253 Sum_probs=91.3
Q ss_pred CCcEEEEEcCCChhHHHHHHHHHhcccCCCCCCeEEEEEecccchhhhhhhHhhhhhhccCCccceEEeCCHHHHh----
Q 019990 4 NPLRVLVTGAAGQIGYALVPMIARGIMLGPDQPVILHMLDIEPAAEALNGVKMELIDAAFPLLKGVVATTDVVEAC---- 79 (332)
Q Consensus 4 ~~~kI~VtGaaG~IGs~l~~~L~~~~~~~~~~~~~i~l~D~~~~~~~~~~~~~dl~~~~~~~~~~v~~~~~~~~a~---- 79 (332)
+.++|+||||+|+||++++..|++.|. +|.+.|++. +.+.....++.........|++...++.+++
T Consensus 26 ~gk~vlVTGas~gIG~aia~~la~~G~-------~V~~~~r~~--~~~~~~~~~~~~~~~~~~~Dv~d~~~v~~~~~~~~ 96 (266)
T 3grp_A 26 TGRKALVTGATGGIGEAIARCFHAQGA-------IVGLHGTRE--DKLKEIAADLGKDVFVFSANLSDRKSIKQLAEVAE 96 (266)
T ss_dssp TTCEEEESSTTSHHHHHHHHHHHHTTC-------EEEEEESCH--HHHHHHHHHHCSSEEEEECCTTSHHHHHHHHHHHH
T ss_pred CCCEEEEeCCCcHHHHHHHHHHHHCCC-------EEEEEeCCH--HHHHHHHHHhCCceEEEEeecCCHHHHHHHHHHHH
Confidence 457899999999999999999999885 899999753 2333222222111111123443333333333
Q ss_pred ---CCCcEEEEecCCCCCC---CCCh---hHHHhhhHHH----HHHHHHHHHhhcCCCcEEEEEeCChhhHHHHHHHHCC
Q 019990 80 ---KDVNIAVMVGGFPRKE---GMER---KDVMSKNVSI----YKAQASALEKHAAPNCKVLVVANPANTNALILKEFAP 146 (332)
Q Consensus 80 ---~~aDiVi~~ag~~~~~---~~~~---~~~~~~N~~~----~~~i~~~i~~~~~~~~~viv~snp~~~~~~~~~~~~~ 146 (332)
...|++|+.||..... ..+. ...++.|+.. ++.+++.+.+.. .+++|++|+.... .
T Consensus 97 ~~~g~iD~lvnnAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~~--~g~Iv~isS~~~~---------~ 165 (266)
T 3grp_A 97 REMEGIDILVNNAGITRDGLFVRMQDQDWDDVLAVNLTAASTLTRELIHSMMRRR--YGRIINITSIVGV---------V 165 (266)
T ss_dssp HHHTSCCEEEECCCCC-----CCCHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHT--CEEEEEECCC-------------
T ss_pred HHcCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC--CcEEEEECCHHHc---------C
Confidence 3789999999975321 1222 2356678777 455555555543 4577777764321 1
Q ss_pred CCCCCcEEEeecccHHHHHHHHHHHcCCCCCCeee
Q 019990 147 SIPAKNITCLTRLDHNRAMGQISERLKVHVSDVKN 181 (332)
Q Consensus 147 ~~~~~~i~~~t~l~~~r~~~~~a~~~~v~~~~v~~ 181 (332)
+.+....|+.+|.....+.+.+++.++ +..|+.
T Consensus 166 ~~~~~~~Y~asKaa~~~~~~~la~e~~--~~gI~v 198 (266)
T 3grp_A 166 GNPGQTNYCAAKAGLIGFSKALAQEIA--SRNITV 198 (266)
T ss_dssp ---CHHHHHHHHHHHHHHHHHHHHHHG--GGTEEE
T ss_pred CCCCchhHHHHHHHHHHHHHHHHHHhh--hhCcEE
Confidence 122233567778777788888888765 345664
|
| >2b4q_A Rhamnolipids biosynthesis 3-oxoacyl-[acyl- carrier-protein] reductase; RHLG-NADP complex, oxidoreductase; HET: NAP; 2.30A {Pseudomonas aeruginosa} | Back alignment and structure |
|---|
Probab=98.77 E-value=4.2e-08 Score=87.77 Aligned_cols=164 Identities=13% Similarity=0.101 Sum_probs=96.3
Q ss_pred CCCcEEEEEcCCChhHHHHHHHHHhcccCCCCCCeEEEEEecccchhhhhhhHhhhhhh-c-cCCccceEEeCCHHHHh-
Q 019990 3 KNPLRVLVTGAAGQIGYALVPMIARGIMLGPDQPVILHMLDIEPAAEALNGVKMELIDA-A-FPLLKGVVATTDVVEAC- 79 (332)
Q Consensus 3 ~~~~kI~VtGaaG~IGs~l~~~L~~~~~~~~~~~~~i~l~D~~~~~~~~~~~~~dl~~~-~-~~~~~~v~~~~~~~~a~- 79 (332)
.+.++|+||||+|+||.+++..|++.|. +|+++|++. +.+.....++... . .....|++...++.+++
T Consensus 27 l~~k~vlVTGas~gIG~aia~~L~~~G~-------~V~~~~r~~--~~~~~~~~~l~~~~~~~~~~~Dv~d~~~v~~~~~ 97 (276)
T 2b4q_A 27 LAGRIALVTGGSRGIGQMIAQGLLEAGA-------RVFICARDA--EACADTATRLSAYGDCQAIPADLSSEAGARRLAQ 97 (276)
T ss_dssp CTTCEEEEETTTSHHHHHHHHHHHHTTC-------EEEEECSCH--HHHHHHHHHHTTSSCEEECCCCTTSHHHHHHHHH
T ss_pred CCCCEEEEeCCCChHHHHHHHHHHHCCC-------EEEEEeCCH--HHHHHHHHHHHhcCceEEEEeeCCCHHHHHHHHH
Confidence 3457899999999999999999999885 899999863 2333222333211 0 01123443333333333
Q ss_pred ------CCCcEEEEecCCCCCC---CCCh---hHHHhhhHHHHHHH----HHHHHhhcCC--CcEEEEEeCChhhHHHHH
Q 019990 80 ------KDVNIAVMVGGFPRKE---GMER---KDVMSKNVSIYKAQ----ASALEKHAAP--NCKVLVVANPANTNALIL 141 (332)
Q Consensus 80 ------~~aDiVi~~ag~~~~~---~~~~---~~~~~~N~~~~~~i----~~~i~~~~~~--~~~viv~snp~~~~~~~~ 141 (332)
...|++|+.||..... ..+. ...++.|+.....+ ++.+++.+.+ ..++|++|+....
T Consensus 98 ~~~~~~g~iD~lvnnAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~m~~~~~~~~~g~iV~isS~~~~----- 172 (276)
T 2b4q_A 98 ALGELSARLDILVNNAGTSWGAALESYPVSGWEKVMQLNVTSVFSCIQQLLPLLRRSASAENPARVINIGSVAGI----- 172 (276)
T ss_dssp HHHHHCSCCSEEEECCCCCCCCCTTSCCSHHHHHHHHHHTHHHHHHHHHHHHHHHHHCCSSSCEEEEEECCGGGT-----
T ss_pred HHHHhcCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhccCCCCCCEEEEECCHHHc-----
Confidence 3789999999874321 1222 23567787666444 4444444310 1577777763221
Q ss_pred HHHCCCCCCCc-EEEeecccHHHHHHHHHHHcCCCCCCeeeeEEEec
Q 019990 142 KEFAPSIPAKN-ITCLTRLDHNRAMGQISERLKVHVSDVKNVIIWGN 187 (332)
Q Consensus 142 ~~~~~~~~~~~-i~~~t~l~~~r~~~~~a~~~~v~~~~v~~~~V~G~ 187 (332)
.+.+... .|+.+|.....+.+.+++.+. +..|+. +++.+
T Consensus 173 ----~~~~~~~~~Y~asK~a~~~~~~~la~e~~--~~gI~v-n~v~P 212 (276)
T 2b4q_A 173 ----SAMGEQAYAYGPSKAALHQLSRMLAKELV--GEHINV-NVIAP 212 (276)
T ss_dssp ----CCCCCSCTTHHHHHHHHHHHHHHHHHHHG--GGTEEE-EEEEE
T ss_pred ----CCCCCCccccHHHHHHHHHHHHHHHHHhc--ccCeEE-EEEEe
Confidence 1233334 577788888888888887764 345664 33443
|
| >1hxh_A 3BETA/17BETA-hydroxysteroid dehydrogenase; alpha-beta, rossmann fold, short-chain dehydrogenase, oxidoreductase; 1.22A {Comamonas testosteroni} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=98.77 E-value=5.9e-09 Score=91.99 Aligned_cols=162 Identities=14% Similarity=0.102 Sum_probs=93.4
Q ss_pred CCcEEEEEcCCChhHHHHHHHHHhcccCCCCCCeEEEEEecccchhhhhhhHhhhhhhccCCccceEEeCCHHHHh----
Q 019990 4 NPLRVLVTGAAGQIGYALVPMIARGIMLGPDQPVILHMLDIEPAAEALNGVKMELIDAAFPLLKGVVATTDVVEAC---- 79 (332)
Q Consensus 4 ~~~kI~VtGaaG~IGs~l~~~L~~~~~~~~~~~~~i~l~D~~~~~~~~~~~~~dl~~~~~~~~~~v~~~~~~~~a~---- 79 (332)
+.++|+||||+|+||++++..|++.|. +|++.|++. +.+.....++.........|++...++.+++
T Consensus 5 ~~k~vlVTGas~giG~~ia~~l~~~G~-------~V~~~~r~~--~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~ 75 (253)
T 1hxh_A 5 QGKVALVTGGASGVGLEVVKLLLGEGA-------KVAFSDINE--AAGQQLAAELGERSMFVRHDVSSEADWTLVMAAVQ 75 (253)
T ss_dssp TTCEEEETTTTSHHHHHHHHHHHHTTC-------EEEEECSCH--HHHHHHHHHHCTTEEEECCCTTCHHHHHHHHHHHH
T ss_pred CCCEEEEeCCCcHHHHHHHHHHHHCCC-------EEEEEeCCH--HHHHHHHHHcCCceEEEEccCCCHHHHHHHHHHHH
Confidence 356899999999999999999999885 899999853 2233222222110011123443333333333
Q ss_pred ---CCCcEEEEecCCCCCC---CCCh---hHHHhhhHHHH----HHHHHHHHhhcCCCcEEEEEeCChhhHHHHHHHHCC
Q 019990 80 ---KDVNIAVMVGGFPRKE---GMER---KDVMSKNVSIY----KAQASALEKHAAPNCKVLVVANPANTNALILKEFAP 146 (332)
Q Consensus 80 ---~~aDiVi~~ag~~~~~---~~~~---~~~~~~N~~~~----~~i~~~i~~~~~~~~~viv~snp~~~~~~~~~~~~~ 146 (332)
...|++||.||..... ..+. ...+..|+... +.+++.+++. . .++|++|+.... .
T Consensus 76 ~~~g~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~N~~~~~~~~~~~~~~~~~~--~-g~iv~isS~~~~---------~ 143 (253)
T 1hxh_A 76 RRLGTLNVLVNNAGILLPGDMETGRLEDFSRLLKINTESVFIGCQQGIAAMKET--G-GSIINMASVSSW---------L 143 (253)
T ss_dssp HHHCSCCEEEECCCCCCCBCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHTTT--C-EEEEEECCGGGT---------S
T ss_pred HHcCCCCEEEECCCCCCCCCcccCCHHHHHHHHHhhcHHHHHHHHHHHHHHHHc--C-CEEEEEcchhhc---------C
Confidence 3579999999974321 1222 23456676544 4444444443 2 577777764321 1
Q ss_pred CCCCCcEEEeecccHHHHHHHHHHHc-----CCCCCCeeeeEEEe
Q 019990 147 SIPAKNITCLTRLDHNRAMGQISERL-----KVHVSDVKNVIIWG 186 (332)
Q Consensus 147 ~~~~~~i~~~t~l~~~r~~~~~a~~~-----~v~~~~v~~~~V~G 186 (332)
+.+....|+.+|.....+.+.+++.+ |+....|++-.|++
T Consensus 144 ~~~~~~~Y~~sK~a~~~~~~~la~e~~~~~~gi~v~~v~Pg~v~t 188 (253)
T 1hxh_A 144 PIEQYAGYSASKAAVSALTRAAALSCRKQGYAIRVNSIHPDGIYT 188 (253)
T ss_dssp CCTTBHHHHHHHHHHHHHHHHHHHHHHHHTCCEEEEEEEESEECC
T ss_pred CCCCCccHHHHHHHHHHHHHHHHHHhhhcCCCeEEEEEEeCCccC
Confidence 23333457777877777777777765 55555555444433
|
| >2p91_A Enoyl-[acyl-carrier-protein] reductase [NADH]; NADH-dependent enoyl-ACP reductase, FABI, aquifex A VF5, structural genomics, PSI; 2.00A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=98.77 E-value=1.3e-08 Score=91.38 Aligned_cols=151 Identities=17% Similarity=0.180 Sum_probs=94.1
Q ss_pred CCcEEEEEcCC--ChhHHHHHHHHHhcccCCCCCCeEEEEEecccchhhhhhhHhhhhhh--c-cCCccceEEeCCHHHH
Q 019990 4 NPLRVLVTGAA--GQIGYALVPMIARGIMLGPDQPVILHMLDIEPAAEALNGVKMELIDA--A-FPLLKGVVATTDVVEA 78 (332)
Q Consensus 4 ~~~kI~VtGaa--G~IGs~l~~~L~~~~~~~~~~~~~i~l~D~~~~~~~~~~~~~dl~~~--~-~~~~~~v~~~~~~~~a 78 (332)
+.++|+||||+ |+||.+++..|++.|. +|+++|++.. ......++... . .....|++...++.++
T Consensus 20 ~~k~vlVTGas~~~gIG~~ia~~l~~~G~-------~V~~~~r~~~---~~~~~~~l~~~~~~~~~~~~Dl~~~~~v~~~ 89 (285)
T 2p91_A 20 EGKRALITGVANERSIAYGIAKSFHREGA-------QLAFTYATPK---LEKRVREIAKGFGSDLVVKCDVSLDEDIKNL 89 (285)
T ss_dssp TTCEEEECCCSSTTSHHHHHHHHHHHTTC-------EEEEEESSGG---GHHHHHHHHHHTTCCCEEECCTTCHHHHHHH
T ss_pred CCCEEEEECCCCCCcHHHHHHHHHHHcCC-------EEEEEeCCHH---HHHHHHHHHHhcCCeEEEEcCCCCHHHHHHH
Confidence 34689999998 9999999999999885 8999987641 11122222211 1 1112344433333333
Q ss_pred h-------CCCcEEEEecCCCCC-----C--CCCh---hHHHhhhHHHHHHHHHHHHhhcC-CCcEEEEEeCChhhHHHH
Q 019990 79 C-------KDVNIAVMVGGFPRK-----E--GMER---KDVMSKNVSIYKAQASALEKHAA-PNCKVLVVANPANTNALI 140 (332)
Q Consensus 79 ~-------~~aDiVi~~ag~~~~-----~--~~~~---~~~~~~N~~~~~~i~~~i~~~~~-~~~~viv~snp~~~~~~~ 140 (332)
+ ...|++||.||.... + ..+. ...+..|+.....+.+.+..+-. ...++|++|+....
T Consensus 90 ~~~~~~~~g~iD~lv~~Ag~~~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~g~iv~isS~~~~---- 165 (285)
T 2p91_A 90 KKFLEENWGSLDIIVHSIAYAPKEEFKGGVIDTSREGFKIAMDISVYSLIALTRELLPLMEGRNGAIVTLSYYGAE---- 165 (285)
T ss_dssp HHHHHHHTSCCCEEEECCCCCCGGGGSSCGGGCCHHHHHHHHHHHTHHHHHHHHHHGGGGTTSCCEEEEEECGGGT----
T ss_pred HHHHHHHcCCCCEEEECCCCCCcccCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCCEEEEEccchhc----
Confidence 3 268999999997531 1 1222 23567888888888888876632 23577777763221
Q ss_pred HHHHCCCCCCCcEEEeecccHHHHHHHHHHHcC
Q 019990 141 LKEFAPSIPAKNITCLTRLDHNRAMGQISERLK 173 (332)
Q Consensus 141 ~~~~~~~~~~~~i~~~t~l~~~r~~~~~a~~~~ 173 (332)
.+.+....|+.+|.....+.+.++..+.
T Consensus 166 -----~~~~~~~~Y~~sK~a~~~~~~~la~e~~ 193 (285)
T 2p91_A 166 -----KVVPHYNVMGIAKAALESTVRYLAYDIA 193 (285)
T ss_dssp -----SBCTTTTHHHHHHHHHHHHHHHHHHHHH
T ss_pred -----cCCCCccHHHHHHHHHHHHHHHHHHHhc
Confidence 1233334577888888888888887763
|
| >1ooe_A Dihydropteridine reductase; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics; HET: MES; 1.65A {Caenorhabditis elegans} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=98.76 E-value=9.4e-09 Score=89.62 Aligned_cols=152 Identities=11% Similarity=0.044 Sum_probs=95.8
Q ss_pred CcEEEEEcCCChhHHHHHHHHHhcccCCCCCCeEEEEEecccchhhhhhhHhhhhhhccCCccceEEeCCHHHHh-----
Q 019990 5 PLRVLVTGAAGQIGYALVPMIARGIMLGPDQPVILHMLDIEPAAEALNGVKMELIDAAFPLLKGVVATTDVVEAC----- 79 (332)
Q Consensus 5 ~~kI~VtGaaG~IGs~l~~~L~~~~~~~~~~~~~i~l~D~~~~~~~~~~~~~dl~~~~~~~~~~v~~~~~~~~a~----- 79 (332)
.++|+||||+|+||++++..|++.|. +|+++|++.. ...+ . ......|++...++.+++
T Consensus 3 ~k~vlITGas~gIG~~~a~~l~~~G~-------~V~~~~r~~~--~~~~------~-~~~~~~D~~~~~~~~~~~~~~~~ 66 (236)
T 1ooe_A 3 SGKVIVYGGKGALGSAILEFFKKNGY-------TVLNIDLSAN--DQAD------S-NILVDGNKNWTEQEQSILEQTAS 66 (236)
T ss_dssp CEEEEEETTTSHHHHHHHHHHHHTTE-------EEEEEESSCC--TTSS------E-EEECCTTSCHHHHHHHHHHHHHH
T ss_pred CCEEEEECCCcHHHHHHHHHHHHCCC-------EEEEEecCcc--cccc------c-cEEEeCCCCCHHHHHHHHHHHHH
Confidence 46899999999999999999999885 8999998642 1111 0 011123343333333322
Q ss_pred ----CCCcEEEEecCCCCC----CCCCh---hHHHhhhHHHHHHHHHHHHhhcCCCcEEEEEeCChhhHHHHHHHHCCCC
Q 019990 80 ----KDVNIAVMVGGFPRK----EGMER---KDVMSKNVSIYKAQASALEKHAAPNCKVLVVANPANTNALILKEFAPSI 148 (332)
Q Consensus 80 ----~~aDiVi~~ag~~~~----~~~~~---~~~~~~N~~~~~~i~~~i~~~~~~~~~viv~snp~~~~~~~~~~~~~~~ 148 (332)
.+.|+|||.||.... ...+. ...++.|+.....+.+.+..+-.+..++|++|+.... .+.
T Consensus 67 ~~~~g~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~g~iv~isS~~~~---------~~~ 137 (236)
T 1ooe_A 67 SLQGSQVDGVFCVAGGWAGGSASSKDFVKNADLMIKQSVWSSAIAAKLATTHLKPGGLLQLTGAAAAM---------GPT 137 (236)
T ss_dssp HHTTCCEEEEEECCCCCCCBCTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEECCGGGG---------SCC
T ss_pred HhCCCCCCEEEECCcccCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHhccCCEEEEECchhhc---------cCC
Confidence 378999999996431 11111 2356778888878877777653223577777764321 123
Q ss_pred CCCcEEEeecccHHHHHHHHHHHcCCCCCCeee
Q 019990 149 PAKNITCLTRLDHNRAMGQISERLKVHVSDVKN 181 (332)
Q Consensus 149 ~~~~i~~~t~l~~~r~~~~~a~~~~v~~~~v~~ 181 (332)
+....|+.+|.....+.+.+++.++..+..|+.
T Consensus 138 ~~~~~Y~~sK~a~~~~~~~la~e~~~~~~gi~v 170 (236)
T 1ooe_A 138 PSMIGYGMAKAAVHHLTSSLAAKDSGLPDNSAV 170 (236)
T ss_dssp TTBHHHHHHHHHHHHHHHHHHSTTSSCCTTCEE
T ss_pred CCcHHHHHHHHHHHHHHHHHHHHhcccCCCeEE
Confidence 444467778887778888888776544566764
|
| >2rhc_B Actinorhodin polyketide ketoreductase; oxidoreductase, combinatorial biosynthesis, short chain dehydrogenase/reductase; HET: NAP EMO; 2.10A {Streptomyces coelicolor} SCOP: c.2.1.2 PDB: 2rh4_A* 1w4z_A* 3csd_B* 3qrw_A* 3ri3_B* 2rhr_B* 1x7g_A* 1x7h_A* 1xr3_A* | Back alignment and structure |
|---|
Probab=98.76 E-value=9.8e-09 Score=91.88 Aligned_cols=158 Identities=15% Similarity=0.126 Sum_probs=96.2
Q ss_pred CCcEEEEEcCCChhHHHHHHHHHhcccCCCCCCeEEEEEecccchhhhhhhHhhhhhhc--c-CCccceEEeCCHHHHhC
Q 019990 4 NPLRVLVTGAAGQIGYALVPMIARGIMLGPDQPVILHMLDIEPAAEALNGVKMELIDAA--F-PLLKGVVATTDVVEACK 80 (332)
Q Consensus 4 ~~~kI~VtGaaG~IGs~l~~~L~~~~~~~~~~~~~i~l~D~~~~~~~~~~~~~dl~~~~--~-~~~~~v~~~~~~~~a~~ 80 (332)
+.++|+||||+|+||++++..|++.|. +|+++|++. +.+.....++.... . ....|++...++.++++
T Consensus 21 ~~k~vlVTGas~gIG~~ia~~l~~~G~-------~V~~~~r~~--~~~~~~~~~l~~~~~~~~~~~~Dv~~~~~v~~~~~ 91 (277)
T 2rhc_B 21 DSEVALVTGATSGIGLEIARRLGKEGL-------RVFVCARGE--EGLRTTLKELREAGVEADGRTCDVRSVPEIEALVA 91 (277)
T ss_dssp TSCEEEEETCSSHHHHHHHHHHHHTTC-------EEEEEESCH--HHHHHHHHHHHHTTCCEEEEECCTTCHHHHHHHHH
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHCCC-------EEEEEeCCH--HHHHHHHHHHHhcCCceEEEECCCCCHHHHHHHHH
Confidence 456899999999999999999999885 899999864 23332223332211 0 11234433333333333
Q ss_pred -------CCcEEEEecCCCCCC---CCCh---hHHHhhhHHHHHHHHHHHHhh--c--CCCcEEEEEeCChhhHHHHHHH
Q 019990 81 -------DVNIAVMVGGFPRKE---GMER---KDVMSKNVSIYKAQASALEKH--A--APNCKVLVVANPANTNALILKE 143 (332)
Q Consensus 81 -------~aDiVi~~ag~~~~~---~~~~---~~~~~~N~~~~~~i~~~i~~~--~--~~~~~viv~snp~~~~~~~~~~ 143 (332)
+.|+||+.||..... ..+. ...+..|+.....+.+++... - ....++|++|+....
T Consensus 92 ~~~~~~g~iD~lv~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~m~~~~~g~iv~isS~~~~------- 164 (277)
T 2rhc_B 92 AVVERYGPVDVLVNNAGRPGGGATAELADELWLDVVETNLTGVFRVTKQVLKAGGMLERGTGRIVNIASTGGK------- 164 (277)
T ss_dssp HHHHHTCSCSEEEECCCCCCCSCGGGCCHHHHHHHHHHHTHHHHHHHHHHHTTTCHHHHTEEEEEEECCGGGT-------
T ss_pred HHHHHhCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHhChhhHhhcCCeEEEEECccccc-------
Confidence 689999999975321 1122 235677888877777765543 0 023577777764321
Q ss_pred HCCCCCCCcEEEeecccHHHHHHHHHHHcCCCCCCeee
Q 019990 144 FAPSIPAKNITCLTRLDHNRAMGQISERLKVHVSDVKN 181 (332)
Q Consensus 144 ~~~~~~~~~i~~~t~l~~~r~~~~~a~~~~v~~~~v~~ 181 (332)
.+.+....|+.+|.....+.+.++..+. +..|+.
T Consensus 165 --~~~~~~~~Y~asK~a~~~~~~~la~e~~--~~gi~v 198 (277)
T 2rhc_B 165 --QGVVHAAPYSASKHGVVGFTKALGLELA--RTGITV 198 (277)
T ss_dssp --SCCTTCHHHHHHHHHHHHHHHHHHHHHT--TTEEEE
T ss_pred --cCCCCCccHHHHHHHHHHHHHHHHHHHH--HhCcEE
Confidence 1233334577788877888888887765 345664
|
| >3t4x_A Oxidoreductase, short chain dehydrogenase/reducta; structural genomics, center for structural genomics of infec diseases, csgid; 2.80A {Bacillus anthracis} | Back alignment and structure |
|---|
Probab=98.76 E-value=3.8e-08 Score=87.53 Aligned_cols=161 Identities=13% Similarity=0.093 Sum_probs=98.3
Q ss_pred CCcEEEEEcCCChhHHHHHHHHHhcccCCCCCCeEEEEEecccchhhhhhhHhhhhhhc----c-CCccceEEeCCHHHH
Q 019990 4 NPLRVLVTGAAGQIGYALVPMIARGIMLGPDQPVILHMLDIEPAAEALNGVKMELIDAA----F-PLLKGVVATTDVVEA 78 (332)
Q Consensus 4 ~~~kI~VtGaaG~IGs~l~~~L~~~~~~~~~~~~~i~l~D~~~~~~~~~~~~~dl~~~~----~-~~~~~v~~~~~~~~a 78 (332)
+.++++||||+|+||.+++..|++.|. +|++.|++. +.+.....++.... . ....|++...++.+.
T Consensus 9 ~~k~~lVTGas~gIG~aia~~l~~~G~-------~V~~~~r~~--~~~~~~~~~l~~~~~~~~~~~~~~D~~~~~~~~~~ 79 (267)
T 3t4x_A 9 KGKTALVTGSTAGIGKAIATSLVAEGA-------NVLINGRRE--ENVNETIKEIRAQYPDAILQPVVADLGTEQGCQDV 79 (267)
T ss_dssp TTCEEEETTCSSHHHHHHHHHHHHTTC-------EEEEEESSH--HHHHHHHHHHHHHCTTCEEEEEECCTTSHHHHHHH
T ss_pred CCCEEEEeCCCcHHHHHHHHHHHHCCC-------EEEEEeCCH--HHHHHHHHHHHhhCCCceEEEEecCCCCHHHHHHH
Confidence 457899999999999999999999885 899999864 23333333332210 0 111233322223333
Q ss_pred ---hCCCcEEEEecCCCCCC---CCChh---HHHhhhHHHH----HHHHHHHHhhcCCCcEEEEEeCChhhHHHHHHHHC
Q 019990 79 ---CKDVNIAVMVGGFPRKE---GMERK---DVMSKNVSIY----KAQASALEKHAAPNCKVLVVANPANTNALILKEFA 145 (332)
Q Consensus 79 ---~~~aDiVi~~ag~~~~~---~~~~~---~~~~~N~~~~----~~i~~~i~~~~~~~~~viv~snp~~~~~~~~~~~~ 145 (332)
+...|++|+.||..... ..+.+ ..++.|+... +.+++.+.+. ..+++|++|+....
T Consensus 80 ~~~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~~~~~~~~--~~g~iv~isS~~~~--------- 148 (267)
T 3t4x_A 80 IEKYPKVDILINNLGIFEPVEYFDIPDEDWFKLFEVNIMSGVRLTRSYLKKMIER--KEGRVIFIASEAAI--------- 148 (267)
T ss_dssp HHHCCCCSEEEECCCCCCCCCGGGSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHT--TEEEEEEECCGGGT---------
T ss_pred HHhcCCCCEEEECCCCCCCCccccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhC--CCCEEEEEcchhhc---------
Confidence 34789999999975321 12222 2467787764 4444555443 24577777764321
Q ss_pred CCCCCCcEEEeecccHHHHHHHHHHHcCCCCCCeeeeEEEec
Q 019990 146 PSIPAKNITCLTRLDHNRAMGQISERLKVHVSDVKNVIIWGN 187 (332)
Q Consensus 146 ~~~~~~~i~~~t~l~~~r~~~~~a~~~~v~~~~v~~~~V~G~ 187 (332)
.+.+....|+.+|.....+.+.++..++ +..|+. +.+.+
T Consensus 149 ~~~~~~~~Y~asKaa~~~l~~~la~e~~--~~gi~v-n~v~P 187 (267)
T 3t4x_A 149 MPSQEMAHYSATKTMQLSLSRSLAELTT--GTNVTV-NTIMP 187 (267)
T ss_dssp SCCTTCHHHHHHHHHHHHHHHHHHHHTT--TSEEEE-EEEEE
T ss_pred cCCCcchHHHHHHHHHHHHHHHHHHHhC--CCCeEE-EEEeC
Confidence 2233444678888888888888888765 456774 44554
|
| >3oig_A Enoyl-[acyl-carrier-protein] reductase [NADH]; fatty acid synthesis, rossmann-like fold, enoyl-ACP reductas binding; HET: NAD IMJ; 1.25A {Bacillus subtilis} SCOP: c.2.1.2 PDB: 3oif_A* 2qio_A* 3oje_A 3ojf_A* | Back alignment and structure |
|---|
Probab=98.76 E-value=4.7e-08 Score=86.68 Aligned_cols=158 Identities=12% Similarity=0.102 Sum_probs=99.7
Q ss_pred CCCcEEEEEcCCCh--hHHHHHHHHHhcccCCCCCCeEEEEEecccchhhhhhhHhhhhhh----cc-CCccceEEeCCH
Q 019990 3 KNPLRVLVTGAAGQ--IGYALVPMIARGIMLGPDQPVILHMLDIEPAAEALNGVKMELIDA----AF-PLLKGVVATTDV 75 (332)
Q Consensus 3 ~~~~kI~VtGaaG~--IGs~l~~~L~~~~~~~~~~~~~i~l~D~~~~~~~~~~~~~dl~~~----~~-~~~~~v~~~~~~ 75 (332)
.+.++++||||+|+ ||.+++..|++.|. +|.+.+++.. ......++... .. ....|++...++
T Consensus 5 l~~k~vlVTGasg~~GIG~~ia~~l~~~G~-------~V~~~~r~~~---~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v 74 (266)
T 3oig_A 5 LEGRNIVVMGVANKRSIAWGIARSLHEAGA-------RLIFTYAGER---LEKSVHELAGTLDRNDSIILPCDVTNDAEI 74 (266)
T ss_dssp CTTCEEEEECCCSTTSHHHHHHHHHHHTTC-------EEEEEESSGG---GHHHHHHHHHTSSSCCCEEEECCCSSSHHH
T ss_pred cCCCEEEEEcCCCCCcHHHHHHHHHHHCCC-------EEEEecCchH---HHHHHHHHHHhcCCCCceEEeCCCCCHHHH
Confidence 35678999999998 99999999999885 8889887532 11122222111 01 112345444444
Q ss_pred HHHh-------CCCcEEEEecCCCCC-----C--CCCh---hHHHhhhHHHHHHHHHHHHhhcCCCcEEEEEeCChhhHH
Q 019990 76 VEAC-------KDVNIAVMVGGFPRK-----E--GMER---KDVMSKNVSIYKAQASALEKHAAPNCKVLVVANPANTNA 138 (332)
Q Consensus 76 ~~a~-------~~aDiVi~~ag~~~~-----~--~~~~---~~~~~~N~~~~~~i~~~i~~~~~~~~~viv~snp~~~~~ 138 (332)
.+.+ ...|++|+.||.... + ..+. ...+..|+.....+.+.+..+-.+.+++|++|+....
T Consensus 75 ~~~~~~~~~~~g~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~g~iv~isS~~~~-- 152 (266)
T 3oig_A 75 ETCFASIKEQVGVIHGIAHCIAFANKEELVGEYLNTNRDGFLLAHNISSYSLTAVVKAARPMMTEGGSIVTLTYLGGE-- 152 (266)
T ss_dssp HHHHHHHHHHHSCCCEEEECCCCCCGGGGSSCGGGCCHHHHHHHHHHHTHHHHHHHHHHGGGCTTCEEEEEEECGGGT--
T ss_pred HHHHHHHHHHhCCeeEEEEccccccccccccchhhccHHHHHHHHHHhHHHHHHHHHHHHhhcCCCceEEEEeccccc--
Confidence 4333 368999999987531 1 1222 2355678888888888887764345677877764321
Q ss_pred HHHHHHCCCCCCCcEEEeecccHHHHHHHHHHHcCCCCCCeee
Q 019990 139 LILKEFAPSIPAKNITCLTRLDHNRAMGQISERLKVHVSDVKN 181 (332)
Q Consensus 139 ~~~~~~~~~~~~~~i~~~t~l~~~r~~~~~a~~~~v~~~~v~~ 181 (332)
.+.+....|+.+|.....+.+.+++.+. +..|+.
T Consensus 153 -------~~~~~~~~Y~asKaa~~~~~~~la~e~~--~~gi~v 186 (266)
T 3oig_A 153 -------LVMPNYNVMGVAKASLDASVKYLAADLG--KENIRV 186 (266)
T ss_dssp -------SCCTTTHHHHHHHHHHHHHHHHHHHHHG--GGTEEE
T ss_pred -------ccCCCcchhHHHHHHHHHHHHHHHHHHh--hcCcEE
Confidence 2234444678888888888888888875 445664
|
| >1iy8_A Levodione reductase; oxidoreductase; HET: NAD; 1.60A {Leifsonia aquatica} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=98.75 E-value=1e-08 Score=91.09 Aligned_cols=150 Identities=15% Similarity=0.136 Sum_probs=89.4
Q ss_pred CCcEEEEEcCCChhHHHHHHHHHhcccCCCCCCeEEEEEecccchhhhhhhHhhhhhh--c--c-CCccceEEeCCHHHH
Q 019990 4 NPLRVLVTGAAGQIGYALVPMIARGIMLGPDQPVILHMLDIEPAAEALNGVKMELIDA--A--F-PLLKGVVATTDVVEA 78 (332)
Q Consensus 4 ~~~kI~VtGaaG~IGs~l~~~L~~~~~~~~~~~~~i~l~D~~~~~~~~~~~~~dl~~~--~--~-~~~~~v~~~~~~~~a 78 (332)
+.++|+||||+|+||.+++..|++.|. +|+++|++. +.+.....++... . . ....|++...++.++
T Consensus 12 ~~k~vlVTGas~gIG~~ia~~l~~~G~-------~V~~~~r~~--~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~ 82 (267)
T 1iy8_A 12 TDRVVLITGGGSGLGRATAVRLAAEGA-------KLSLVDVSS--EGLEASKAAVLETAPDAEVLTTVADVSDEAQVEAY 82 (267)
T ss_dssp TTCEEEEETTTSHHHHHHHHHHHHTTC-------EEEEEESCH--HHHHHHHHHHHHHCTTCCEEEEECCTTSHHHHHHH
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHCCC-------EEEEEeCCH--HHHHHHHHHHHhhcCCceEEEEEccCCCHHHHHHH
Confidence 356899999999999999999999885 899999864 2333222333221 0 0 111344333333333
Q ss_pred hC-------CCcEEEEecCCCCC--C--CCCh---hHHHhhhHHHH----HHHHHHHHhhcCCCcEEEEEeCChhhHHHH
Q 019990 79 CK-------DVNIAVMVGGFPRK--E--GMER---KDVMSKNVSIY----KAQASALEKHAAPNCKVLVVANPANTNALI 140 (332)
Q Consensus 79 ~~-------~aDiVi~~ag~~~~--~--~~~~---~~~~~~N~~~~----~~i~~~i~~~~~~~~~viv~snp~~~~~~~ 140 (332)
++ ..|++|+.||.... + ..+. ...++.|+... +.+++.+++.. ..++|++|+....
T Consensus 83 ~~~~~~~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~--~g~iv~isS~~~~---- 156 (267)
T 1iy8_A 83 VTATTERFGRIDGFFNNAGIEGKQNPTESFTAAEFDKVVSINLRGVFLGLEKVLKIMREQG--SGMVVNTASVGGI---- 156 (267)
T ss_dssp HHHHHHHHSCCSEEEECCCCCCCCBCGGGSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHT--CCEEEEECCGGGT----
T ss_pred HHHHHHHcCCCCEEEECCCcCCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHcC--CCEEEEEcchhhc----
Confidence 33 68999999997532 1 1122 23456676544 45555555543 3577777764321
Q ss_pred HHHHCCCCCCCcEEEeecccHHHHHHHHHHHcC
Q 019990 141 LKEFAPSIPAKNITCLTRLDHNRAMGQISERLK 173 (332)
Q Consensus 141 ~~~~~~~~~~~~i~~~t~l~~~r~~~~~a~~~~ 173 (332)
.+.+....|+.+|.....+.+.++..+.
T Consensus 157 -----~~~~~~~~Y~asK~a~~~~~~~la~e~~ 184 (267)
T 1iy8_A 157 -----RGIGNQSGYAAAKHGVVGLTRNSAVEYG 184 (267)
T ss_dssp -----SBCSSBHHHHHHHHHHHHHHHHHHHHHG
T ss_pred -----cCCCCCccHHHHHHHHHHHHHHHHHHHH
Confidence 1233334567777777777777777763
|
| >3afn_B Carbonyl reductase; alpha/beta/alpha, rossmann-fold, oxidoreductase; HET: NAP; 1.63A {Sphingomonas SP} PDB: 3afm_A* | Back alignment and structure |
|---|
Probab=98.75 E-value=4.1e-09 Score=92.75 Aligned_cols=159 Identities=12% Similarity=0.113 Sum_probs=92.4
Q ss_pred CCcEEEEEcCCChhHHHHHHHHHhcccCCCCCCeEEEEEecccchhhhhhhHhhhhhh--cc-CCccceEEeCCHHHHhC
Q 019990 4 NPLRVLVTGAAGQIGYALVPMIARGIMLGPDQPVILHMLDIEPAAEALNGVKMELIDA--AF-PLLKGVVATTDVVEACK 80 (332)
Q Consensus 4 ~~~kI~VtGaaG~IGs~l~~~L~~~~~~~~~~~~~i~l~D~~~~~~~~~~~~~dl~~~--~~-~~~~~v~~~~~~~~a~~ 80 (332)
+.++|+||||+|+||++++..|++.|. +|+++|++.. +.+.....++... .. ....|+....++.++++
T Consensus 6 ~~k~vlVTGasggiG~~~a~~l~~~G~-------~V~~~~r~~~-~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~ 77 (258)
T 3afn_B 6 KGKRVLITGSSQGIGLATARLFARAGA-------KVGLHGRKAP-ANIDETIASMRADGGDAAFFAADLATSEACQQLVD 77 (258)
T ss_dssp TTCEEEETTCSSHHHHHHHHHHHHTTC-------EEEEEESSCC-TTHHHHHHHHHHTTCEEEEEECCTTSHHHHHHHHH
T ss_pred CCCEEEEeCCCChHHHHHHHHHHHCCC-------EEEEECCCch-hhHHHHHHHHHhcCCceEEEECCCCCHHHHHHHHH
Confidence 457899999999999999999999885 8999998621 2233222223211 00 11234433334444444
Q ss_pred -------CCcEEEEecCC-CCC-C--CCCh---hHHHhhhHHHHHHHHHHHHh----hc---CCCcEEEEEeCChhhHHH
Q 019990 81 -------DVNIAVMVGGF-PRK-E--GMER---KDVMSKNVSIYKAQASALEK----HA---APNCKVLVVANPANTNAL 139 (332)
Q Consensus 81 -------~aDiVi~~ag~-~~~-~--~~~~---~~~~~~N~~~~~~i~~~i~~----~~---~~~~~viv~snp~~~~~~ 139 (332)
+.|+|||.||. ... + ..+. ...+..|+.....+.+.+.. .. .+..+++++|+... .
T Consensus 78 ~~~~~~g~id~vi~~Ag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~iv~~sS~~~---~ 154 (258)
T 3afn_B 78 EFVAKFGGIDVLINNAGGLVGRKPLPEIDDTFYDAVMDANIRSVVMTTKFALPHLAAAAKASGQTSAVISTGSIAG---H 154 (258)
T ss_dssp HHHHHHSSCSEEEECCCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHTSCEEEEEECCTHH---H
T ss_pred HHHHHcCCCCEEEECCCCcCCcCccccCCHHHHHHHHHhccHHHHHHHHHHHHHHHhcccCCCCCcEEEEecchhh---c
Confidence 79999999986 321 1 1122 23456777666655554432 11 01256666665321 1
Q ss_pred HHHHHCCCCCCCcEEEeecccHHHHHHHHHHHcCCCCCCee
Q 019990 140 ILKEFAPSIPAKNITCLTRLDHNRAMGQISERLKVHVSDVK 180 (332)
Q Consensus 140 ~~~~~~~~~~~~~i~~~t~l~~~r~~~~~a~~~~v~~~~v~ 180 (332)
. .+.++...|+.+|.....+...+++.++ +..++
T Consensus 155 ---~--~~~~~~~~Y~~sK~a~~~~~~~~~~e~~--~~gi~ 188 (258)
T 3afn_B 155 ---T--GGGPGAGLYGAAKAFLHNVHKNWVDFHT--KDGVR 188 (258)
T ss_dssp ---H--CCCTTCHHHHHHHHHHHHHHHHHHHHHG--GGTEE
T ss_pred ---c--CCCCCchHHHHHHHHHHHHHHHHHHhhc--ccCeE
Confidence 0 1234444678888888888888887763 23455
|
| >1ae1_A Tropinone reductase-I; oxidoreductase, tropane alkaloid biosynthesis, reduction of tropinone to tropine, short-chain dehydrogenase; HET: NAP; 2.40A {Datura stramonium} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=98.75 E-value=1.9e-08 Score=89.74 Aligned_cols=156 Identities=15% Similarity=0.153 Sum_probs=93.8
Q ss_pred CCcEEEEEcCCChhHHHHHHHHHhcccCCCCCCeEEEEEecccchhhhhhhHhhhhhhc--c-CCccceEEeCCHHHHh-
Q 019990 4 NPLRVLVTGAAGQIGYALVPMIARGIMLGPDQPVILHMLDIEPAAEALNGVKMELIDAA--F-PLLKGVVATTDVVEAC- 79 (332)
Q Consensus 4 ~~~kI~VtGaaG~IGs~l~~~L~~~~~~~~~~~~~i~l~D~~~~~~~~~~~~~dl~~~~--~-~~~~~v~~~~~~~~a~- 79 (332)
+.++++||||+|+||++++..|++.|. +|+++|++. +.+.....++.... . ....|++...++.+++
T Consensus 20 ~~k~vlVTGas~gIG~aia~~l~~~G~-------~V~~~~r~~--~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~ 90 (273)
T 1ae1_A 20 KGTTALVTGGSKGIGYAIVEELAGLGA-------RVYTCSRNE--KELDECLEIWREKGLNVEGSVCDLLSRTERDKLMQ 90 (273)
T ss_dssp TTCEEEEESCSSHHHHHHHHHHHHTTC-------EEEEEESCH--HHHHHHHHHHHHTTCCEEEEECCTTCHHHHHHHHH
T ss_pred CCCEEEEECCcchHHHHHHHHHHHCCC-------EEEEEeCCH--HHHHHHHHHHHhcCCceEEEECCCCCHHHHHHHHH
Confidence 347899999999999999999999885 899999864 23332223332211 0 1112343333333333
Q ss_pred -------CCCcEEEEecCCCCCC---CCChh---HHHhhhHHHHHHHHHHH----HhhcCCCcEEEEEeCChhhHHHHHH
Q 019990 80 -------KDVNIAVMVGGFPRKE---GMERK---DVMSKNVSIYKAQASAL----EKHAAPNCKVLVVANPANTNALILK 142 (332)
Q Consensus 80 -------~~aDiVi~~ag~~~~~---~~~~~---~~~~~N~~~~~~i~~~i----~~~~~~~~~viv~snp~~~~~~~~~ 142 (332)
...|++|+.||..... ..+.+ ..+..|+.....+.+++ ++.. ..++|++|+....
T Consensus 91 ~~~~~~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~m~~~~--~g~iv~isS~~~~------ 162 (273)
T 1ae1_A 91 TVAHVFDGKLNILVNNAGVVIHKEAKDFTEKDYNIIMGTNFEAAYHLSQIAYPLLKASQ--NGNVIFLSSIAGF------ 162 (273)
T ss_dssp HHHHHTTSCCCEEEECCCCCCCCCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHT--SEEEEEECCGGGT------
T ss_pred HHHHHcCCCCcEEEECCCCCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcC--CcEEEEEcCHhhc------
Confidence 5789999999974321 12222 34567777666666555 3332 3577777764321
Q ss_pred HHCCCCCCCcEEEeecccHHHHHHHHHHHcCCCCCCeee
Q 019990 143 EFAPSIPAKNITCLTRLDHNRAMGQISERLKVHVSDVKN 181 (332)
Q Consensus 143 ~~~~~~~~~~i~~~t~l~~~r~~~~~a~~~~v~~~~v~~ 181 (332)
.+.+....|+.+|.....+.+.++..+. +..|+.
T Consensus 163 ---~~~~~~~~Y~asK~a~~~~~~~la~e~~--~~gi~v 196 (273)
T 1ae1_A 163 ---SALPSVSLYSASKGAINQMTKSLACEWA--KDNIRV 196 (273)
T ss_dssp ---SCCTTCHHHHHHHHHHHHHHHHHHHHHG--GGTEEE
T ss_pred ---CCCCCcchhHHHHHHHHHHHHHHHHHHh--hcCcEE
Confidence 1233344677788877888888887763 334553
|
| >1mxh_A Pteridine reductase 2; SDR topology, protein-substrate complex, oxidoreductase; HET: NAP DHF; 2.20A {Trypanosoma cruzi} SCOP: c.2.1.2 PDB: 1mxf_A* | Back alignment and structure |
|---|
Probab=98.74 E-value=1.1e-08 Score=91.28 Aligned_cols=157 Identities=10% Similarity=0.048 Sum_probs=95.6
Q ss_pred CcEEEEEcCCChhHHHHHHHHHhcccCCCCCCeEEEEEec-ccchhhhhhhHhhhhhh-c---cCCccceEEe----CCH
Q 019990 5 PLRVLVTGAAGQIGYALVPMIARGIMLGPDQPVILHMLDI-EPAAEALNGVKMELIDA-A---FPLLKGVVAT----TDV 75 (332)
Q Consensus 5 ~~kI~VtGaaG~IGs~l~~~L~~~~~~~~~~~~~i~l~D~-~~~~~~~~~~~~dl~~~-~---~~~~~~v~~~----~~~ 75 (332)
.++++||||+|+||.+++..|++.|. +|+++|+ +. +.+.....++... . .....|++.. .++
T Consensus 11 ~k~~lVTGas~gIG~~ia~~l~~~G~-------~V~~~~r~~~--~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~ 81 (276)
T 1mxh_A 11 CPAAVITGGARRIGHSIAVRLHQQGF-------RVVVHYRHSE--GAAQRLVAELNAARAGSAVLCKGDLSLSSSLLDCC 81 (276)
T ss_dssp CCEEEETTCSSHHHHHHHHHHHHTTC-------EEEEEESSCH--HHHHHHHHHHHHHSTTCEEEEECCCSSSTTHHHHH
T ss_pred CCEEEEeCCCcHHHHHHHHHHHHCCC-------EEEEEeCCCh--HHHHHHHHHHHHhcCCceEEEeccCCCccccHHHH
Confidence 36799999999999999999999885 8999997 43 2333333333211 0 1112344444 333
Q ss_pred HHHhC-------CCcEEEEecCCCCCC---CCCh--------------hHHHhhhHHHHHHHHHHHHhhcC-CC------
Q 019990 76 VEACK-------DVNIAVMVGGFPRKE---GMER--------------KDVMSKNVSIYKAQASALEKHAA-PN------ 124 (332)
Q Consensus 76 ~~a~~-------~aDiVi~~ag~~~~~---~~~~--------------~~~~~~N~~~~~~i~~~i~~~~~-~~------ 124 (332)
.++++ ..|++||.||..... ..+. ...+..|+.....+.+.+..+-. ..
T Consensus 82 ~~~~~~~~~~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~~~~~~ 161 (276)
T 1mxh_A 82 EDIIDCSFRAFGRCDVLVNNASAYYPTPLLPGDDTNGAADAKPIDAQVAELFGSNAVAPLFLIRAFARRQGEGGAWRSRN 161 (276)
T ss_dssp HHHHHHHHHHHSCCCEEEECCCCCCCCCSCC-----------CHHHHHHHHHHHHTHHHHHHHHHHHHTC-------CCC
T ss_pred HHHHHHHHHhcCCCCEEEECCCCCCCCCccccCcccccccccchHHHHHHHHHhccHHHHHHHHHHHHHHhcCCCCCCCC
Confidence 33333 789999999974321 1111 23567888888788777766421 12
Q ss_pred cEEEEEeCChhhHHHHHHHHCCCCCCCcEEEeecccHHHHHHHHHHHcCCCCCCeee
Q 019990 125 CKVLVVANPANTNALILKEFAPSIPAKNITCLTRLDHNRAMGQISERLKVHVSDVKN 181 (332)
Q Consensus 125 ~~viv~snp~~~~~~~~~~~~~~~~~~~i~~~t~l~~~r~~~~~a~~~~v~~~~v~~ 181 (332)
.++|++|+.... .+.+....|+.+|.....+.+.+++.++ +..|+.
T Consensus 162 g~iv~isS~~~~---------~~~~~~~~Y~asK~a~~~l~~~la~e~~--~~gi~v 207 (276)
T 1mxh_A 162 LSVVNLCDAMTD---------LPLPGFCVYTMAKHALGGLTRAAALELA--PRHIRV 207 (276)
T ss_dssp EEEEEECCGGGG---------SCCTTCHHHHHHHHHHHHHHHHHHHHHG--GGTEEE
T ss_pred cEEEEECchhhc---------CCCCCCeehHHHHHHHHHHHHHHHHHHh--hcCeEE
Confidence 577777764321 1234444678888888888888887763 334553
|
| >3rd5_A Mypaa.01249.C; ssgcid, structural genomics, seattle structural genomics CEN infectious disease, oxidoreductase; HET: EPE; 1.50A {Mycobacterium paratuberculosis} | Back alignment and structure |
|---|
Probab=98.74 E-value=1.4e-08 Score=91.53 Aligned_cols=167 Identities=13% Similarity=0.030 Sum_probs=101.2
Q ss_pred CCcEEEEEcCCChhHHHHHHHHHhcccCCCCCCeEEEEEecccchhhhhhhHhhhhhhccCCccceEEeCCHHHHhC---
Q 019990 4 NPLRVLVTGAAGQIGYALVPMIARGIMLGPDQPVILHMLDIEPAAEALNGVKMELIDAAFPLLKGVVATTDVVEACK--- 80 (332)
Q Consensus 4 ~~~kI~VtGaaG~IGs~l~~~L~~~~~~~~~~~~~i~l~D~~~~~~~~~~~~~dl~~~~~~~~~~v~~~~~~~~a~~--- 80 (332)
+.++|+||||+|+||++++..|++.|. +|++.|++. +.+.....++.........|++...++.++++
T Consensus 15 ~gk~vlVTGas~gIG~~~a~~L~~~G~-------~V~~~~r~~--~~~~~~~~~~~~~~~~~~~Dl~d~~~v~~~~~~~~ 85 (291)
T 3rd5_A 15 AQRTVVITGANSGLGAVTARELARRGA-------TVIMAVRDT--RKGEAAARTMAGQVEVRELDLQDLSSVRRFADGVS 85 (291)
T ss_dssp TTCEEEEECCSSHHHHHHHHHHHHTTC-------EEEEEESCH--HHHHHHHTTSSSEEEEEECCTTCHHHHHHHHHTCC
T ss_pred CCCEEEEeCCCChHHHHHHHHHHHCCC-------EEEEEECCH--HHHHHHHHHhcCCeeEEEcCCCCHHHHHHHHHhcC
Confidence 457899999999999999999999885 899999864 22322222221100111234444444555554
Q ss_pred CCcEEEEecCCCCCC----CCChhHHHhhhHHHHHHHHHHHHhhcCCCcEEEEEeCChhhHHHHHHH-H---CCCCCCCc
Q 019990 81 DVNIAVMVGGFPRKE----GMERKDVMSKNVSIYKAQASALEKHAAPNCKVLVVANPANTNALILKE-F---APSIPAKN 152 (332)
Q Consensus 81 ~aDiVi~~ag~~~~~----~~~~~~~~~~N~~~~~~i~~~i~~~~~~~~~viv~snp~~~~~~~~~~-~---~~~~~~~~ 152 (332)
..|++||.||..... ...-...++.|+.....+.+.+.... . .++|++|+........-.. . ...+++..
T Consensus 86 ~iD~lv~nAg~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~-~-~riv~isS~~~~~~~~~~~~~~~~~~~~~~~~ 163 (291)
T 3rd5_A 86 GADVLINNAGIMAVPYALTVDGFESQIGTNHLGHFALTNLLLPRL-T-DRVVTVSSMAHWPGRINLEDLNWRSRRYSPWL 163 (291)
T ss_dssp CEEEEEECCCCCSCCCCBCTTSCBHHHHHHTHHHHHHHHHHGGGE-E-EEEEEECCGGGTTCCCCSSCTTCSSSCCCHHH
T ss_pred CCCEEEECCcCCCCcccCCHHHHHHHHHHHHHHHHHHHHHHHHHH-H-hheeEeechhhccCCCCcccccccccCCCCcc
Confidence 569999999974321 11223467889999999999888875 2 3677777543211000000 0 00122223
Q ss_pred EEEeecccHHHHHHHHHHHcCCCCCCeee
Q 019990 153 ITCLTRLDHNRAMGQISERLKVHVSDVKN 181 (332)
Q Consensus 153 i~~~t~l~~~r~~~~~a~~~~v~~~~v~~ 181 (332)
.|+.+|.....+.+.+++.++-.-..|+.
T Consensus 164 ~Y~~sK~a~~~~~~~la~e~~~~g~~i~v 192 (291)
T 3rd5_A 164 AYSQSKLANLLFTSELQRRLTAAGSPLRA 192 (291)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTTCCCEE
T ss_pred hHHHHHHHHHHHHHHHHHHHhhCCCCEEE
Confidence 57888888888888888887643333664
|
| >1spx_A Short-chain reductase family member (5L265); parallel beta-sheet of seven strands in the order 3214567; 2.10A {Caenorhabditis elegans} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=98.74 E-value=9.6e-09 Score=91.77 Aligned_cols=151 Identities=13% Similarity=0.133 Sum_probs=88.6
Q ss_pred CCcEEEEEcCCChhHHHHHHHHHhcccCCCCCCeEEEEEecccchhhhhhhHhhh---hh--hcc-CCccceEEeCCHHH
Q 019990 4 NPLRVLVTGAAGQIGYALVPMIARGIMLGPDQPVILHMLDIEPAAEALNGVKMEL---ID--AAF-PLLKGVVATTDVVE 77 (332)
Q Consensus 4 ~~~kI~VtGaaG~IGs~l~~~L~~~~~~~~~~~~~i~l~D~~~~~~~~~~~~~dl---~~--~~~-~~~~~v~~~~~~~~ 77 (332)
+.++|+||||+|+||++++..|++.|. +|+++|++. +.+.....++ .. ... ....|++...++.+
T Consensus 5 ~~k~vlVTGas~gIG~~ia~~l~~~G~-------~V~~~~r~~--~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~ 75 (278)
T 1spx_A 5 AEKVAIITGSSNGIGRATAVLFAREGA-------KVTITGRHA--ERLEETRQQILAAGVSEQNVNSVVADVTTDAGQDE 75 (278)
T ss_dssp TTCEEEETTTTSHHHHHHHHHHHHTTC-------EEEEEESCH--HHHHHHHHHHHHTTCCGGGEEEEECCTTSHHHHHH
T ss_pred CCCEEEEeCCCchHHHHHHHHHHHCCC-------EEEEEeCCH--HHHHHHHHHHHhcccCCCceeEEecccCCHHHHHH
Confidence 457899999999999999999999885 899999863 2333222233 10 000 11234433334444
Q ss_pred HhC-------CCcEEEEecCCCCCC---CC----Ch---hHHHhhhHHHHHHHHHHHHhhc-CCCcEEEEEeCChh-hHH
Q 019990 78 ACK-------DVNIAVMVGGFPRKE---GM----ER---KDVMSKNVSIYKAQASALEKHA-APNCKVLVVANPAN-TNA 138 (332)
Q Consensus 78 a~~-------~aDiVi~~ag~~~~~---~~----~~---~~~~~~N~~~~~~i~~~i~~~~-~~~~~viv~snp~~-~~~ 138 (332)
+++ +.|++|+.||..... .. +. ...+..|+.....+.+.+..+- ....++|++|+... .
T Consensus 76 ~~~~~~~~~g~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~g~iv~isS~~~~~-- 153 (278)
T 1spx_A 76 ILSTTLGKFGKLDILVNNAGAAIPDSQSKTGTAQSIESYDATLNLNLRSVIALTKKAVPHLSSTKGEIVNISSIASGL-- 153 (278)
T ss_dssp HHHHHHHHHSCCCEEEECCC-------------CCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEECCTTSSS--
T ss_pred HHHHHHHHcCCCCEEEECCCCCCCcccccccccCCHHHHHHHHHHHhHHHHHHHHHHHHHHhhcCCeEEEEecccccc--
Confidence 444 899999999874221 11 22 2356778777666666554431 00257777776422 1
Q ss_pred HHHHHHCCCCCCCcEEEeecccHHHHHHHHHHHc
Q 019990 139 LILKEFAPSIPAKNITCLTRLDHNRAMGQISERL 172 (332)
Q Consensus 139 ~~~~~~~~~~~~~~i~~~t~l~~~r~~~~~a~~~ 172 (332)
.+.+....|+.+|.....+.+.++..+
T Consensus 154 -------~~~~~~~~Y~~sK~a~~~~~~~la~e~ 180 (278)
T 1spx_A 154 -------HATPDFPYYSIAKAAIDQYTRNTAIDL 180 (278)
T ss_dssp -------SCCTTSHHHHHHHHHHHHHHHHHHHHH
T ss_pred -------cCCCCccHHHHHHHHHHHHHHHHHHHH
Confidence 123333457778887778877777765
|
| >3gaf_A 7-alpha-hydroxysteroid dehydrogenase; seattle structural genomics center for infectious disease, ssgcid, oxidoreductase, structural genomics; 2.20A {Brucella melitensis} | Back alignment and structure |
|---|
Probab=98.74 E-value=5e-08 Score=86.22 Aligned_cols=158 Identities=16% Similarity=0.090 Sum_probs=97.9
Q ss_pred CCcEEEEEcCCChhHHHHHHHHHhcccCCCCCCeEEEEEecccchhhhhhhHhhhhhhcc---CCccceEEeCCHHHHh-
Q 019990 4 NPLRVLVTGAAGQIGYALVPMIARGIMLGPDQPVILHMLDIEPAAEALNGVKMELIDAAF---PLLKGVVATTDVVEAC- 79 (332)
Q Consensus 4 ~~~kI~VtGaaG~IGs~l~~~L~~~~~~~~~~~~~i~l~D~~~~~~~~~~~~~dl~~~~~---~~~~~v~~~~~~~~a~- 79 (332)
+.++++||||+|+||++++..|++.|. +|++.|++. +.+.....++..... ....|++...++.+.+
T Consensus 11 ~~k~vlVTGas~gIG~~ia~~l~~~G~-------~V~~~~r~~--~~~~~~~~~~~~~~~~~~~~~~Dv~d~~~v~~~~~ 81 (256)
T 3gaf_A 11 NDAVAIVTGAAAGIGRAIAGTFAKAGA-------SVVVTDLKS--EGAEAVAAAIRQAGGKAIGLECNVTDEQHREAVIK 81 (256)
T ss_dssp TTCEEEECSCSSHHHHHHHHHHHHHTC-------EEEEEESSH--HHHHHHHHHHHHTTCCEEEEECCTTCHHHHHHHHH
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHCCC-------EEEEEeCCH--HHHHHHHHHHHhcCCcEEEEECCCCCHHHHHHHHH
Confidence 357899999999999999999999886 899999864 233333333332111 1123444333333333
Q ss_pred ------CCCcEEEEecCCCCCC--CCChh---HHHhhhHHHHHHHHHHHHhhc--CCCcEEEEEeCChhhHHHHHHHHCC
Q 019990 80 ------KDVNIAVMVGGFPRKE--GMERK---DVMSKNVSIYKAQASALEKHA--APNCKVLVVANPANTNALILKEFAP 146 (332)
Q Consensus 80 ------~~aDiVi~~ag~~~~~--~~~~~---~~~~~N~~~~~~i~~~i~~~~--~~~~~viv~snp~~~~~~~~~~~~~ 146 (332)
...|++||.||..... ..+.+ ..++.|+.....+.+++..+- ...+++|++|+.... .
T Consensus 82 ~~~~~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~~~g~iv~isS~~~~---------~ 152 (256)
T 3gaf_A 82 AALDQFGKITVLVNNAGGGGPKPFDMPMSDFEWAFKLNLFSLFRLSQLAAPHMQKAGGGAILNISSMAGE---------N 152 (256)
T ss_dssp HHHHHHSCCCEEEECCCCCCCCCTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHTTCEEEEEECCGGGT---------C
T ss_pred HHHHHcCCCCEEEECCCCCCCCCCCCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCcEEEEEcCHHHc---------C
Confidence 3789999999974321 22222 356778777766666653321 134677877764321 2
Q ss_pred CCCCCcEEEeecccHHHHHHHHHHHcCCCCCCeee
Q 019990 147 SIPAKNITCLTRLDHNRAMGQISERLKVHVSDVKN 181 (332)
Q Consensus 147 ~~~~~~i~~~t~l~~~r~~~~~a~~~~v~~~~v~~ 181 (332)
+.+....|+.+|.....+.+.+++.++ +..|+.
T Consensus 153 ~~~~~~~Y~asKaa~~~~~~~la~e~~--~~gi~v 185 (256)
T 3gaf_A 153 TNVRMASYGSSKAAVNHLTRNIAFDVG--PMGIRV 185 (256)
T ss_dssp CCTTCHHHHHHHHHHHHHHHHHHHHHG--GGTEEE
T ss_pred CCCCchHHHHHHHHHHHHHHHHHHHHh--hhCcEE
Confidence 334444678888888888888888875 345664
|
| >1uls_A Putative 3-oxoacyl-acyl carrier protein reductase; structural genomics, riken structural genomics/proteomics initiative, RSGI; 2.40A {Thermus thermophilus} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=98.74 E-value=3.6e-08 Score=86.49 Aligned_cols=158 Identities=19% Similarity=0.129 Sum_probs=94.7
Q ss_pred CCCCCcEEEEEcCCChhHHHHHHHHHhcccCCCCCCeEEEEEecccchhhhhhhHhhhhhhccCCccceEEeCCHHHHh-
Q 019990 1 MAKNPLRVLVTGAAGQIGYALVPMIARGIMLGPDQPVILHMLDIEPAAEALNGVKMELIDAAFPLLKGVVATTDVVEAC- 79 (332)
Q Consensus 1 m~~~~~kI~VtGaaG~IGs~l~~~L~~~~~~~~~~~~~i~l~D~~~~~~~~~~~~~dl~~~~~~~~~~v~~~~~~~~a~- 79 (332)
|..+.++++||||+|+||.+++..|++.|. +|++++++. +.+.....++. ......|++...++.+++
T Consensus 1 m~l~~k~vlVTGas~giG~~ia~~l~~~G~-------~V~~~~r~~--~~~~~~~~~~~--~~~~~~D~~~~~~~~~~~~ 69 (245)
T 1uls_A 1 MRLKDKAVLITGAAHGIGRATLELFAKEGA-------RLVACDIEE--GPLREAAEAVG--AHPVVMDVADPASVERGFA 69 (245)
T ss_dssp CTTTTCEEEEESTTSHHHHHHHHHHHHTTC-------EEEEEESCH--HHHHHHHHTTT--CEEEECCTTCHHHHHHHHH
T ss_pred CCCCCCEEEEECCCCHHHHHHHHHHHHCCC-------EEEEEeCCH--HHHHHHHHHcC--CEEEEecCCCHHHHHHHHH
Confidence 666678899999999999999999999885 899999853 22322211111 011112343333333333
Q ss_pred ------CCCcEEEEecCCCCCC---CCCh---hHHHhhhHHHHHHHHHHHHhhc--CCCcEEEEEeCChhhHHHHHHHHC
Q 019990 80 ------KDVNIAVMVGGFPRKE---GMER---KDVMSKNVSIYKAQASALEKHA--APNCKVLVVANPANTNALILKEFA 145 (332)
Q Consensus 80 ------~~aDiVi~~ag~~~~~---~~~~---~~~~~~N~~~~~~i~~~i~~~~--~~~~~viv~snp~~~~~~~~~~~~ 145 (332)
...|++|+.||..... ..+. ...+..|+.....+.+.+..+- ....++|++|+.. .
T Consensus 70 ~~~~~~g~id~lvn~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~m~~~~~g~iv~isS~~-~--------- 139 (245)
T 1uls_A 70 EALAHLGRLDGVVHYAGITRDNFHWKMPLEDWELVLRVNLTGSFLVAKAASEAMREKNPGSIVLTASRV-Y--------- 139 (245)
T ss_dssp HHHHHHSSCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHHHHHHHHHHHHHHHHTTTCCEEEEEECCGG-G---------
T ss_pred HHHHHcCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCCEEEEEccch-h---------
Confidence 3589999999975321 1122 2356778877777766665441 1235777777633 1
Q ss_pred CCCCCCcEEEeecccHHHHHHHHHHHcCCCCCCeee
Q 019990 146 PSIPAKNITCLTRLDHNRAMGQISERLKVHVSDVKN 181 (332)
Q Consensus 146 ~~~~~~~i~~~t~l~~~r~~~~~a~~~~v~~~~v~~ 181 (332)
.+.+....|+.+|.....+.+.+++.+. +..|+.
T Consensus 140 ~~~~~~~~Y~asK~a~~~~~~~la~e~~--~~gi~v 173 (245)
T 1uls_A 140 LGNLGQANYAASMAGVVGLTRTLALELG--RWGIRV 173 (245)
T ss_dssp GCCTTCHHHHHHHHHHHHHHHHHHHHHG--GGTEEE
T ss_pred cCCCCchhHHHHHHHHHHHHHHHHHHHh--HhCeEE
Confidence 1223333567777777777777777764 345664
|
| >3ijr_A Oxidoreductase, short chain dehydrogenase/reducta; structural genomics, infectious D center for structural genomics of infectious diseases; HET: NAD; 2.05A {Bacillus anthracis str} PDB: 3i3o_A* | Back alignment and structure |
|---|
Probab=98.74 E-value=1.3e-08 Score=91.90 Aligned_cols=152 Identities=14% Similarity=0.052 Sum_probs=94.8
Q ss_pred CcEEEEEcCCChhHHHHHHHHHhcccCCCCCCeEEEEEecccchhhhhhhHhhhhhhcc---CCccceEEeCCHHHHh--
Q 019990 5 PLRVLVTGAAGQIGYALVPMIARGIMLGPDQPVILHMLDIEPAAEALNGVKMELIDAAF---PLLKGVVATTDVVEAC-- 79 (332)
Q Consensus 5 ~~kI~VtGaaG~IGs~l~~~L~~~~~~~~~~~~~i~l~D~~~~~~~~~~~~~dl~~~~~---~~~~~v~~~~~~~~a~-- 79 (332)
.++|+||||+|+||++++..|++.|. +|++.|++... ........+..... ....|++...++.+++
T Consensus 47 gk~vlVTGas~GIG~aia~~la~~G~-------~V~~~~r~~~~-~~~~~~~~~~~~~~~~~~~~~Dv~d~~~v~~~~~~ 118 (291)
T 3ijr_A 47 GKNVLITGGDSGIGRAVSIAFAKEGA-------NIAIAYLDEEG-DANETKQYVEKEGVKCVLLPGDLSDEQHCKDIVQE 118 (291)
T ss_dssp TCEEEEETTTSHHHHHHHHHHHHTTC-------EEEEEESSCHH-HHHHHHHHHHTTTCCEEEEESCTTSHHHHHHHHHH
T ss_pred CCEEEEeCCCcHHHHHHHHHHHHCCC-------EEEEEeCCchH-HHHHHHHHHHhcCCcEEEEECCCCCHHHHHHHHHH
Confidence 46899999999999999999999885 89999986421 11111111111110 1123443333333333
Q ss_pred -----CCCcEEEEecCCCCCCC----CCh---hHHHhhhHHHHHHHHHHHHhhcCCCcEEEEEeCChhhHHHHHHHHCCC
Q 019990 80 -----KDVNIAVMVGGFPRKEG----MER---KDVMSKNVSIYKAQASALEKHAAPNCKVLVVANPANTNALILKEFAPS 147 (332)
Q Consensus 80 -----~~aDiVi~~ag~~~~~~----~~~---~~~~~~N~~~~~~i~~~i~~~~~~~~~viv~snp~~~~~~~~~~~~~~ 147 (332)
...|++||.||...... .+. ...++.|+.....+.+++..+-.+..++|++|+.... .+
T Consensus 119 ~~~~~g~iD~lvnnAg~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~g~iv~isS~~~~---------~~ 189 (291)
T 3ijr_A 119 TVRQLGSLNILVNNVAQQYPQQGLEYITAEQLEKTFRINIFSYFHVTKAALSHLKQGDVIINTASIVAY---------EG 189 (291)
T ss_dssp HHHHHSSCCEEEECCCCCCCCSSGGGCCHHHHHHHHHHHTHHHHHHHHHHHTTCCTTCEEEEECCTHHH---------HC
T ss_pred HHHHcCCCCEEEECCCCcCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHhhCCEEEEEechHhc---------CC
Confidence 37899999998643211 122 2457789888888888887764334577777753321 12
Q ss_pred CCCCcEEEeecccHHHHHHHHHHHcC
Q 019990 148 IPAKNITCLTRLDHNRAMGQISERLK 173 (332)
Q Consensus 148 ~~~~~i~~~t~l~~~r~~~~~a~~~~ 173 (332)
.+....|+.+|.....+.+.++..++
T Consensus 190 ~~~~~~Y~asKaa~~~l~~~la~e~~ 215 (291)
T 3ijr_A 190 NETLIDYSATKGAIVAFTRSLSQSLV 215 (291)
T ss_dssp CTTCHHHHHHHHHHHHHHHHHHHHHG
T ss_pred CCCChhHHHHHHHHHHHHHHHHHHHh
Confidence 33334578888888888888888874
|
| >3qvo_A NMRA family protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, unknown function; HET: MNB; 2.30A {Shigella flexneri 2A} | Back alignment and structure |
|---|
Probab=98.73 E-value=1.9e-08 Score=87.72 Aligned_cols=103 Identities=16% Similarity=0.157 Sum_probs=68.1
Q ss_pred CCCcEEEEEcCCChhHHHHHHHHHhcc-cCCCCCCeEEEEEecccchhhhhhhHhhhhhhc-cCCccceEEeCCHHHHhC
Q 019990 3 KNPLRVLVTGAAGQIGYALVPMIARGI-MLGPDQPVILHMLDIEPAAEALNGVKMELIDAA-FPLLKGVVATTDVVEACK 80 (332)
Q Consensus 3 ~~~~kI~VtGaaG~IGs~l~~~L~~~~-~~~~~~~~~i~l~D~~~~~~~~~~~~~dl~~~~-~~~~~~v~~~~~~~~a~~ 80 (332)
+.|++|+||||+|+||++++..|++.+ . +|++++++.. .+.. +.... .....|+....++.++++
T Consensus 21 ~~mk~vlVtGatG~iG~~l~~~L~~~G~~-------~V~~~~R~~~--~~~~----~~~~~~~~~~~Dl~d~~~~~~~~~ 87 (236)
T 3qvo_A 21 GHMKNVLILGAGGQIARHVINQLADKQTI-------KQTLFARQPA--KIHK----PYPTNSQIIMGDVLNHAALKQAMQ 87 (236)
T ss_dssp -CCEEEEEETTTSHHHHHHHHHHTTCTTE-------EEEEEESSGG--GSCS----SCCTTEEEEECCTTCHHHHHHHHT
T ss_pred CcccEEEEEeCCcHHHHHHHHHHHhCCCc-------eEEEEEcChh--hhcc----cccCCcEEEEecCCCHHHHHHHhc
Confidence 346789999999999999999999887 5 8999988642 2211 11100 111235544556777889
Q ss_pred CCcEEEEecCCCCCCCCChhHHHhhhHHHHHHHHHHHHhhcCCCcEEEEEeC
Q 019990 81 DVNIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEKHAAPNCKVLVVAN 132 (332)
Q Consensus 81 ~aDiVi~~ag~~~~~~~~~~~~~~~N~~~~~~i~~~i~~~~~~~~~viv~sn 132 (332)
++|+||+++|... .+ ..++.+++++++.+ ..++|++|+
T Consensus 88 ~~D~vv~~a~~~~------~~------~~~~~~~~~~~~~~--~~~iV~iSS 125 (236)
T 3qvo_A 88 GQDIVYANLTGED------LD------IQANSVIAAMKACD--VKRLIFVLS 125 (236)
T ss_dssp TCSEEEEECCSTT------HH------HHHHHHHHHHHHTT--CCEEEEECC
T ss_pred CCCEEEEcCCCCc------hh------HHHHHHHHHHHHcC--CCEEEEEec
Confidence 9999999987421 11 22457788888764 236777775
|
| >3s55_A Putative short-chain dehydrogenase/reductase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: NAD; 2.10A {Mycobacterium abscessus} SCOP: c.2.1.0 | Back alignment and structure |
|---|
Probab=98.73 E-value=4.1e-08 Score=87.88 Aligned_cols=158 Identities=13% Similarity=0.075 Sum_probs=95.5
Q ss_pred CCcEEEEEcCCChhHHHHHHHHHhcccCCCCCCeEEEEEecccc----------hhhhhhhHhhhhhhcc---CCccceE
Q 019990 4 NPLRVLVTGAAGQIGYALVPMIARGIMLGPDQPVILHMLDIEPA----------AEALNGVKMELIDAAF---PLLKGVV 70 (332)
Q Consensus 4 ~~~kI~VtGaaG~IGs~l~~~L~~~~~~~~~~~~~i~l~D~~~~----------~~~~~~~~~dl~~~~~---~~~~~v~ 70 (332)
+.++++||||+|+||++++..|++.|. +|+++|++.. .+.+......+..... ....|++
T Consensus 9 ~~k~~lVTGas~gIG~a~a~~l~~~G~-------~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~ 81 (281)
T 3s55_A 9 EGKTALITGGARGMGRSHAVALAEAGA-------DIAICDRCENSDVVGYPLATADDLAETVALVEKTGRRCISAKVDVK 81 (281)
T ss_dssp TTCEEEEETTTSHHHHHHHHHHHHTTC-------EEEEEECCSCCTTCSSCCCCHHHHHHHHHHHHHTTCCEEEEECCTT
T ss_pred CCCEEEEeCCCchHHHHHHHHHHHCCC-------eEEEEeCCccccccccccccHHHHHHHHHHHHhcCCeEEEEeCCCC
Confidence 457899999999999999999999886 8999998521 1122222222221110 1123444
Q ss_pred EeCCHHHHhC-------CCcEEEEecCCCCC---CCCCh---hHHHhhhHHHHHHHHHHH----HhhcCCCcEEEEEeCC
Q 019990 71 ATTDVVEACK-------DVNIAVMVGGFPRK---EGMER---KDVMSKNVSIYKAQASAL----EKHAAPNCKVLVVANP 133 (332)
Q Consensus 71 ~~~~~~~a~~-------~aDiVi~~ag~~~~---~~~~~---~~~~~~N~~~~~~i~~~i----~~~~~~~~~viv~snp 133 (332)
...++.+.++ ..|++||.||.... ...+. ...++.|+.....+.+++ .+. ..+++|++|+.
T Consensus 82 ~~~~v~~~~~~~~~~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~--~~g~iv~isS~ 159 (281)
T 3s55_A 82 DRAALESFVAEAEDTLGGIDIAITNAGISTIALLPEVESAQWDEVIGTNLTGTFNTIAAVAPGMIKR--NYGRIVTVSSM 159 (281)
T ss_dssp CHHHHHHHHHHHHHHHTCCCEEEECCCCCCCCCTTCCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHH--TCEEEEEECCG
T ss_pred CHHHHHHHHHHHHHhcCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHc--CCCEEEEECCh
Confidence 3333333333 78999999997432 12232 235667877776666654 433 24677877764
Q ss_pred hhhHHHHHHHHCCCCCCCcEEEeecccHHHHHHHHHHHcCCCCCCeee
Q 019990 134 ANTNALILKEFAPSIPAKNITCLTRLDHNRAMGQISERLKVHVSDVKN 181 (332)
Q Consensus 134 ~~~~~~~~~~~~~~~~~~~i~~~t~l~~~r~~~~~a~~~~v~~~~v~~ 181 (332)
... .+.+....|+.+|.....+.+.++..++ +..|+.
T Consensus 160 ~~~---------~~~~~~~~Y~asK~a~~~~~~~la~e~~--~~gi~v 196 (281)
T 3s55_A 160 LGH---------SANFAQASYVSSKWGVIGLTKCAAHDLV--GYGITV 196 (281)
T ss_dssp GGG---------SCCTTCHHHHHHHHHHHHHHHHHHHHTG--GGTEEE
T ss_pred hhc---------CCCCCCchhHHHHHHHHHHHHHHHHHHh--hcCcEE
Confidence 321 2234444678888888888888888764 344553
|
| >3ioy_A Short-chain dehydrogenase/reductase SDR; structural genomics, oxidoreductase, PSI-2, protein structure initiative; 1.90A {Novosphingobium aromaticivorans DSM12444} | Back alignment and structure |
|---|
Probab=98.73 E-value=7.7e-09 Score=94.59 Aligned_cols=152 Identities=14% Similarity=0.085 Sum_probs=90.1
Q ss_pred CCcEEEEEcCCChhHHHHHHHHHhcccCCCCCCeEEEEEecccchhhhhhhHhhhhhhc----c-CCccceEEeCCHHHH
Q 019990 4 NPLRVLVTGAAGQIGYALVPMIARGIMLGPDQPVILHMLDIEPAAEALNGVKMELIDAA----F-PLLKGVVATTDVVEA 78 (332)
Q Consensus 4 ~~~kI~VtGaaG~IGs~l~~~L~~~~~~~~~~~~~i~l~D~~~~~~~~~~~~~dl~~~~----~-~~~~~v~~~~~~~~a 78 (332)
+.++|+||||+|+||++++..|++.|. +|++.+++. +.+.....++.... . ....|++...++.++
T Consensus 7 ~~k~vlVTGas~gIG~~la~~l~~~G~-------~Vv~~~r~~--~~~~~~~~~l~~~~~~~~~~~~~~Dl~~~~~v~~~ 77 (319)
T 3ioy_A 7 AGRTAFVTGGANGVGIGLVRQLLNQGC-------KVAIADIRQ--DSIDKALATLEAEGSGPEVMGVQLDVASREGFKMA 77 (319)
T ss_dssp TTCEEEEETTTSTHHHHHHHHHHHTTC-------EEEEEESCH--HHHHHHHHHHHHHTCGGGEEEEECCTTCHHHHHHH
T ss_pred CCCEEEEcCCchHHHHHHHHHHHHCCC-------EEEEEECCH--HHHHHHHHHHHhcCCCCeEEEEECCCCCHHHHHHH
Confidence 356899999999999999999999886 899999864 23333333332211 1 112344433334333
Q ss_pred hC-------CCcEEEEecCCCCCCC---CC---hhHHHhhhHHHHHHHHHHHHhhc--------CCCcEEEEEeCChhhH
Q 019990 79 CK-------DVNIAVMVGGFPRKEG---ME---RKDVMSKNVSIYKAQASALEKHA--------APNCKVLVVANPANTN 137 (332)
Q Consensus 79 ~~-------~aDiVi~~ag~~~~~~---~~---~~~~~~~N~~~~~~i~~~i~~~~--------~~~~~viv~snp~~~~ 137 (332)
++ ..|+||+.||...... .+ ....+..|+.+...+.+++.... ...++||++|+....
T Consensus 78 ~~~~~~~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~~~~~~~g~iV~isS~a~~- 156 (319)
T 3ioy_A 78 ADEVEARFGPVSILCNNAGVNLFQPIEESSYDDWDWLLGVNLHGVVNGVTTFVPRMVERVKAGEQKGGHVVNTASMAAF- 156 (319)
T ss_dssp HHHHHHHTCCEEEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHTTSCCCCEEEEECCGGGT-
T ss_pred HHHHHHhCCCCCEEEECCCcCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhhccCCCCcEEEEecccccc-
Confidence 33 5699999999743211 12 22366778777666665554431 124577777764321
Q ss_pred HHHHHHHCCCCCCCcEEEeecccHHHHHHHHHHHcC
Q 019990 138 ALILKEFAPSIPAKNITCLTRLDHNRAMGQISERLK 173 (332)
Q Consensus 138 ~~~~~~~~~~~~~~~i~~~t~l~~~r~~~~~a~~~~ 173 (332)
.+.+....|+.+|.....+...++..+.
T Consensus 157 --------~~~~~~~~Y~aSKaal~~~~~~la~e~~ 184 (319)
T 3ioy_A 157 --------LAAGSPGIYNTTKFAVRGLSESLHYSLL 184 (319)
T ss_dssp --------CCCSSSHHHHHHHHHHHHHHHHHHHHHG
T ss_pred --------cCCCCCHHHHHHHHHHHHHHHHHHHHhh
Confidence 1233333567777766666666666653
|
| >4dyv_A Short-chain dehydrogenase/reductase SDR; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 1.80A {Xanthobacter autotrophicus} | Back alignment and structure |
|---|
Probab=98.73 E-value=2.4e-08 Score=89.20 Aligned_cols=157 Identities=16% Similarity=0.111 Sum_probs=94.7
Q ss_pred CcEEEEEcCCChhHHHHHHHHHhcccCCCCCCeEEEEEecccchhhhhhhHhhhhhhccCCccceEEeCCHHHHhC----
Q 019990 5 PLRVLVTGAAGQIGYALVPMIARGIMLGPDQPVILHMLDIEPAAEALNGVKMELIDAAFPLLKGVVATTDVVEACK---- 80 (332)
Q Consensus 5 ~~kI~VtGaaG~IGs~l~~~L~~~~~~~~~~~~~i~l~D~~~~~~~~~~~~~dl~~~~~~~~~~v~~~~~~~~a~~---- 80 (332)
.++++||||+|+||.+++..|++.|. +|++.|++. +.+.....++.........|++...++.++++
T Consensus 28 ~k~~lVTGas~GIG~aia~~la~~G~-------~V~~~~r~~--~~~~~~~~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~ 98 (272)
T 4dyv_A 28 KKIAIVTGAGSGVGRAVAVALAGAGY-------GVALAGRRL--DALQETAAEIGDDALCVPTDVTDPDSVRALFTATVE 98 (272)
T ss_dssp CCEEEETTTTSHHHHHHHHHHHHTTC-------EEEEEESCH--HHHHHHHHHHTSCCEEEECCTTSHHHHHHHHHHHHH
T ss_pred CCEEEEeCCCcHHHHHHHHHHHHCCC-------EEEEEECCH--HHHHHHHHHhCCCeEEEEecCCCHHHHHHHHHHHHH
Confidence 46789999999999999999999885 899999863 23333333332111111234443333333333
Q ss_pred ---CCcEEEEecCCCCC--C--CCCh---hHHHhhhHHHHHHHHH----HHHhhcCCCcEEEEEeCChhhHHHHHHHHCC
Q 019990 81 ---DVNIAVMVGGFPRK--E--GMER---KDVMSKNVSIYKAQAS----ALEKHAAPNCKVLVVANPANTNALILKEFAP 146 (332)
Q Consensus 81 ---~aDiVi~~ag~~~~--~--~~~~---~~~~~~N~~~~~~i~~----~i~~~~~~~~~viv~snp~~~~~~~~~~~~~ 146 (332)
..|++|+.||.... + ..+. ...++.|+.....+.+ .+.+...+.+++|++|+.... .
T Consensus 99 ~~g~iD~lVnnAg~~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~~~~~~~~~~~~g~IV~isS~~~~---------~ 169 (272)
T 4dyv_A 99 KFGRVDVLFNNAGTGAPAIPMEDLTFAQWKQVVDTNLTGPFLCTQEAFRVMKAQEPRGGRIINNGSISAT---------S 169 (272)
T ss_dssp HHSCCCEEEECCCCCCCSSCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHSSSCCEEEEEECCSSTT---------S
T ss_pred HcCCCCEEEECCCCCCCCCChhhCCHHHHHHHHHhccHHHHHHHHHHHHHHHhCCCCCcEEEEECchhhc---------C
Confidence 79999999997432 1 1222 2356778776544444 444432124677777764321 2
Q ss_pred CCCCCcEEEeecccHHHHHHHHHHHcCCCCCCeee
Q 019990 147 SIPAKNITCLTRLDHNRAMGQISERLKVHVSDVKN 181 (332)
Q Consensus 147 ~~~~~~i~~~t~l~~~r~~~~~a~~~~v~~~~v~~ 181 (332)
+.+....|+.+|.....+.+.++..++ +..|+.
T Consensus 170 ~~~~~~~Y~asKaa~~~l~~~la~e~~--~~gI~v 202 (272)
T 4dyv_A 170 PRPYSAPYTATKHAITGLTKSTSLDGR--VHDIAC 202 (272)
T ss_dssp CCTTCHHHHHHHHHHHHHHHHHHHHHG--GGTEEE
T ss_pred CCCCchHHHHHHHHHHHHHHHHHHHhC--ccCEEE
Confidence 233344678888888888888888764 345664
|
| >1dhr_A Dihydropteridine reductase; oxidoreductase(acting on NADH or NADPH); HET: NAD; 2.30A {Rattus norvegicus} SCOP: c.2.1.2 PDB: 1dir_A* 1hdr_A* | Back alignment and structure |
|---|
Probab=98.73 E-value=1.3e-08 Score=89.11 Aligned_cols=153 Identities=12% Similarity=0.030 Sum_probs=95.2
Q ss_pred CCcEEEEEcCCChhHHHHHHHHHhcccCCCCCCeEEEEEecccchhhhhhhHhhhhhhccCCccceEEeCCHHHHh----
Q 019990 4 NPLRVLVTGAAGQIGYALVPMIARGIMLGPDQPVILHMLDIEPAAEALNGVKMELIDAAFPLLKGVVATTDVVEAC---- 79 (332)
Q Consensus 4 ~~~kI~VtGaaG~IGs~l~~~L~~~~~~~~~~~~~i~l~D~~~~~~~~~~~~~dl~~~~~~~~~~v~~~~~~~~a~---- 79 (332)
++++|+||||+|+||++++..|++.|. +|+++|++.. ...+ . ......|++...++.+++
T Consensus 6 ~~k~vlVTGas~gIG~~ia~~l~~~G~-------~V~~~~r~~~--~~~~------~-~~~~~~D~~~~~~v~~~~~~~~ 69 (241)
T 1dhr_A 6 EARRVLVYGGRGALGSRCVQAFRARNW-------WVASIDVVEN--EEAS------A-SVIVKMTDSFTEQADQVTAEVG 69 (241)
T ss_dssp CCCEEEEETTTSHHHHHHHHHHHTTTC-------EEEEEESSCC--TTSS------E-EEECCCCSCHHHHHHHHHHHHH
T ss_pred CCCEEEEECCCcHHHHHHHHHHHhCCC-------EEEEEeCChh--hccC------C-cEEEEcCCCCHHHHHHHHHHHH
Confidence 457899999999999999999999885 8999998642 1111 0 011123443333333332
Q ss_pred -----CCCcEEEEecCCCCC----CCCCh---hHHHhhhHHHHHHHHHHHHhhcCCCcEEEEEeCChhhHHHHHHHHCCC
Q 019990 80 -----KDVNIAVMVGGFPRK----EGMER---KDVMSKNVSIYKAQASALEKHAAPNCKVLVVANPANTNALILKEFAPS 147 (332)
Q Consensus 80 -----~~aDiVi~~ag~~~~----~~~~~---~~~~~~N~~~~~~i~~~i~~~~~~~~~viv~snp~~~~~~~~~~~~~~ 147 (332)
.+.|++||.||.... ...+. ...++.|+.....+.+.+..+-.+.+++|++|+.... .+
T Consensus 70 ~~~~~g~iD~lv~~Ag~~~~~~~~~~~~~~~~~~~~~~N~~~~~~~~~~~~~~~~~~g~iv~isS~~~~---------~~ 140 (241)
T 1dhr_A 70 KLLGDQKVDAILCVAGGWAGGNAKSKSLFKNCDLMWKQSIWTSTISSHLATKHLKEGGLLTLAGAKAAL---------DG 140 (241)
T ss_dssp HHHTTCCEEEEEECCCCCCCBCTTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEECCGGGG---------SC
T ss_pred HHhCCCCCCEEEEcccccCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHhhccCCEEEEECCHHHc---------cC
Confidence 368999999997431 11121 2356778888877777776653123577777763321 12
Q ss_pred CCCCcEEEeecccHHHHHHHHHHHcCCCCCCeee
Q 019990 148 IPAKNITCLTRLDHNRAMGQISERLKVHVSDVKN 181 (332)
Q Consensus 148 ~~~~~i~~~t~l~~~r~~~~~a~~~~v~~~~v~~ 181 (332)
.+....|+.+|.....+.+.+++.++..+..|+.
T Consensus 141 ~~~~~~Y~asK~a~~~~~~~la~e~~~~~~gi~v 174 (241)
T 1dhr_A 141 TPGMIGYGMAKGAVHQLCQSLAGKNSGMPSGAAA 174 (241)
T ss_dssp CTTBHHHHHHHHHHHHHHHHHTSTTSSCCTTCEE
T ss_pred CCCchHHHHHHHHHHHHHHHHHHHhccCCCCeEE
Confidence 3333457777777777777777766533566764
|
| >3h7a_A Short chain dehydrogenase; oxidoreductase, PSI-2, NYSGXRC, structural genomics, protein structure initiative; 1.87A {Rhodopseudomonas palustris} | Back alignment and structure |
|---|
Probab=98.73 E-value=8.4e-08 Score=84.57 Aligned_cols=163 Identities=11% Similarity=0.046 Sum_probs=99.5
Q ss_pred CCCcEEEEEcCCChhHHHHHHHHHhcccCCCCCCeEEEEEecccchhhhhhhHhhhhhhc---cCCccceEEeCCHHHHh
Q 019990 3 KNPLRVLVTGAAGQIGYALVPMIARGIMLGPDQPVILHMLDIEPAAEALNGVKMELIDAA---FPLLKGVVATTDVVEAC 79 (332)
Q Consensus 3 ~~~~kI~VtGaaG~IGs~l~~~L~~~~~~~~~~~~~i~l~D~~~~~~~~~~~~~dl~~~~---~~~~~~v~~~~~~~~a~ 79 (332)
.+.++++||||+|+||.+++..|++.|. +|++.|++. +.+.....++.... .....|++...++.+++
T Consensus 5 ~~~k~vlVTGas~GIG~aia~~l~~~G~-------~V~~~~r~~--~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~ 75 (252)
T 3h7a_A 5 PRNATVAVIGAGDYIGAEIAKKFAAEGF-------TVFAGRRNG--EKLAPLVAEIEAAGGRIVARSLDARNEDEVTAFL 75 (252)
T ss_dssp CCSCEEEEECCSSHHHHHHHHHHHHTTC-------EEEEEESSG--GGGHHHHHHHHHTTCEEEEEECCTTCHHHHHHHH
T ss_pred CCCCEEEEECCCchHHHHHHHHHHHCCC-------EEEEEeCCH--HHHHHHHHHHHhcCCeEEEEECcCCCHHHHHHHH
Confidence 3467899999999999999999999886 899999864 33443333443211 11123444444444444
Q ss_pred C------CCcEEEEecCCCCCC---CCCh---hHHHhhhHHHHHHHHH----HHHhhcCCCcEEEEEeCChhhHHHHHHH
Q 019990 80 K------DVNIAVMVGGFPRKE---GMER---KDVMSKNVSIYKAQAS----ALEKHAAPNCKVLVVANPANTNALILKE 143 (332)
Q Consensus 80 ~------~aDiVi~~ag~~~~~---~~~~---~~~~~~N~~~~~~i~~----~i~~~~~~~~~viv~snp~~~~~~~~~~ 143 (332)
+ ..|++|+.||..... ..+. ...++.|+.....+.+ .+++.. .+++|++|+....
T Consensus 76 ~~~~~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~--~g~iv~isS~~~~------- 146 (252)
T 3h7a_A 76 NAADAHAPLEVTIFNVGANVNFPILETTDRVFRKVWEMACWAGFVSGRESARLMLAHG--QGKIFFTGATASL------- 146 (252)
T ss_dssp HHHHHHSCEEEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHT--CEEEEEEEEGGGT-------
T ss_pred HHHHhhCCceEEEECCCcCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcC--CcEEEEECCHHHc-------
Confidence 3 679999999974321 1222 2346677665544444 444442 4577777753321
Q ss_pred HCCCCCCCcEEEeecccHHHHHHHHHHHcCCCCCCeeeeEEEec
Q 019990 144 FAPSIPAKNITCLTRLDHNRAMGQISERLKVHVSDVKNVIIWGN 187 (332)
Q Consensus 144 ~~~~~~~~~i~~~t~l~~~r~~~~~a~~~~v~~~~v~~~~V~G~ 187 (332)
.+.+....|+.+|.....+.+.+++.++ +..|+..+++.+
T Consensus 147 --~~~~~~~~Y~asKaa~~~l~~~la~e~~--~~gi~v~n~v~P 186 (252)
T 3h7a_A 147 --RGGSGFAAFASAKFGLRAVAQSMARELM--PKNIHVAHLIID 186 (252)
T ss_dssp --CCCTTCHHHHHHHHHHHHHHHHHHHHHG--GGTEEEEEEEEC
T ss_pred --CCCCCCccHHHHHHHHHHHHHHHHHHhh--hcCCEEEEEecC
Confidence 2234344678888888888888888875 445774233443
|
| >2ew8_A (S)-1-phenylethanol dehydrogenase; transferase; 2.10A {Azoarcus SP} SCOP: c.2.1.2 PDB: 2ewm_A* | Back alignment and structure |
|---|
Probab=98.72 E-value=1.8e-08 Score=88.59 Aligned_cols=154 Identities=16% Similarity=0.110 Sum_probs=92.4
Q ss_pred CCcEEEEEcCCChhHHHHHHHHHhcccCCCCCCeEEEEEecccchhhhhhhHhhhhhhc--c-CCccceEEeCCHHHH--
Q 019990 4 NPLRVLVTGAAGQIGYALVPMIARGIMLGPDQPVILHMLDIEPAAEALNGVKMELIDAA--F-PLLKGVVATTDVVEA-- 78 (332)
Q Consensus 4 ~~~kI~VtGaaG~IGs~l~~~L~~~~~~~~~~~~~i~l~D~~~~~~~~~~~~~dl~~~~--~-~~~~~v~~~~~~~~a-- 78 (332)
+.++|+||||+|+||++++..|++.|. +|++.|++.. +.+.. .+.... . ....|++...++.++
T Consensus 6 ~~k~vlVTGas~gIG~~ia~~l~~~G~-------~V~~~~r~~~-~~~~~---~~~~~~~~~~~~~~Dv~~~~~v~~~~~ 74 (249)
T 2ew8_A 6 KDKLAVITGGANGIGRAIAERFAVEGA-------DIAIADLVPA-PEAEA---AIRNLGRRVLTVKCDVSQPGDVEAFGK 74 (249)
T ss_dssp TTCEEEEETTTSHHHHHHHHHHHHTTC-------EEEEEESSCC-HHHHH---HHHHTTCCEEEEECCTTCHHHHHHHHH
T ss_pred CCCEEEEeCCCcHHHHHHHHHHHHCCC-------EEEEEcCCch-hHHHH---HHHhcCCcEEEEEeecCCHHHHHHHHH
Confidence 356899999999999999999999885 8999998641 12221 121110 0 111234333333333
Q ss_pred -----hCCCcEEEEecCCCCCC---CCCh---hHHHhhhHHHHHHHHHH----HHhhcCCCcEEEEEeCChhhHHHHHHH
Q 019990 79 -----CKDVNIAVMVGGFPRKE---GMER---KDVMSKNVSIYKAQASA----LEKHAAPNCKVLVVANPANTNALILKE 143 (332)
Q Consensus 79 -----~~~aDiVi~~ag~~~~~---~~~~---~~~~~~N~~~~~~i~~~----i~~~~~~~~~viv~snp~~~~~~~~~~ 143 (332)
+...|++|+.||..... ..+. ...+..|+.....+.++ +++.. ..++|++|+....
T Consensus 75 ~~~~~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~--~g~iv~isS~~~~------- 145 (249)
T 2ew8_A 75 QVISTFGRCDILVNNAGIYPLIPFDELTFEQWKKTFEINVDSGFLMAKAFVPGMKRNG--WGRIINLTSTTYW------- 145 (249)
T ss_dssp HHHHHHSCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHT--CEEEEEECCGGGG-------
T ss_pred HHHHHcCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcC--CeEEEEEcchhhc-------
Confidence 34789999999974321 1222 23566787765444444 55543 4577777764321
Q ss_pred HCCCCCCCcEEEeecccHHHHHHHHHHHcCCCCCCeee
Q 019990 144 FAPSIPAKNITCLTRLDHNRAMGQISERLKVHVSDVKN 181 (332)
Q Consensus 144 ~~~~~~~~~i~~~t~l~~~r~~~~~a~~~~v~~~~v~~ 181 (332)
.+.+....|+.+|.....+.+.+++.++ +..|+.
T Consensus 146 --~~~~~~~~Y~asK~a~~~~~~~la~e~~--~~gi~v 179 (249)
T 2ew8_A 146 --LKIEAYTHYISTKAANIGFTRALASDLG--KDGITV 179 (249)
T ss_dssp --SCCSSCHHHHHHHHHHHHHHHHHHHHHG--GGTEEE
T ss_pred --cCCCCchhHHHHHHHHHHHHHHHHHHHH--hcCcEE
Confidence 1233344677788888888888888764 334553
|
| >1yb1_A 17-beta-hydroxysteroid dehydrogenase type XI; short chain dehydrogenase, HUM structural genomics, structural genomics consortium, SGC; HET: AE2; 1.95A {Homo sapiens} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=98.72 E-value=1e-08 Score=91.48 Aligned_cols=158 Identities=20% Similarity=0.213 Sum_probs=88.9
Q ss_pred CCcEEEEEcCCChhHHHHHHHHHhcccCCCCCCeEEEEEecccchhhhhhhHhhhhhhc--c-CCccceEEeCCHHHHh-
Q 019990 4 NPLRVLVTGAAGQIGYALVPMIARGIMLGPDQPVILHMLDIEPAAEALNGVKMELIDAA--F-PLLKGVVATTDVVEAC- 79 (332)
Q Consensus 4 ~~~kI~VtGaaG~IGs~l~~~L~~~~~~~~~~~~~i~l~D~~~~~~~~~~~~~dl~~~~--~-~~~~~v~~~~~~~~a~- 79 (332)
+.++|+||||+|+||++++..|++.|. +|+++|++. +.+.....++.... . ....|+....++.+++
T Consensus 30 ~~k~vlITGasggIG~~la~~L~~~G~-------~V~~~~r~~--~~~~~~~~~l~~~~~~~~~~~~Dl~~~~~v~~~~~ 100 (272)
T 1yb1_A 30 TGEIVLITGAGHGIGRLTAYEFAKLKS-------KLVLWDINK--HGLEETAAKCKGLGAKVHTFVVDCSNREDIYSSAK 100 (272)
T ss_dssp TTCEEEEETTTSHHHHHHHHHHHHTTC-------EEEEEESCH--HHHHHHHHHHHHTTCCEEEEECCTTCHHHHHHHHH
T ss_pred CCCEEEEECCCchHHHHHHHHHHHCCC-------EEEEEEcCH--HHHHHHHHHHHhcCCeEEEEEeeCCCHHHHHHHHH
Confidence 457899999999999999999999885 899999864 22332222332211 0 1113343333333333
Q ss_pred ------CCCcEEEEecCCCCCCC---CCh---hHHHhhhHHHHHHHHHHH----HhhcCCCcEEEEEeCChhhHHHHHHH
Q 019990 80 ------KDVNIAVMVGGFPRKEG---MER---KDVMSKNVSIYKAQASAL----EKHAAPNCKVLVVANPANTNALILKE 143 (332)
Q Consensus 80 ------~~aDiVi~~ag~~~~~~---~~~---~~~~~~N~~~~~~i~~~i----~~~~~~~~~viv~snp~~~~~~~~~~ 143 (332)
.+.|+||+.||...... .+. ...++.|+.....+.+.+ ++. ...++|++|+.....
T Consensus 101 ~~~~~~g~iD~li~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~--~~~~iv~isS~~~~~------ 172 (272)
T 1yb1_A 101 KVKAEIGDVSILVNNAGVVYTSDLFATQDPQIEKTFEVNVLAHFWTTKAFLPAMTKN--NHGHIVTVASAAGHV------ 172 (272)
T ss_dssp HHHHHTCCCSEEEECCCCCCCCCCGGGHHHHHHHHHHHHTHHHHHHHHHHHHHHHHT--TCEEEEEECCCC-CC------
T ss_pred HHHHHCCCCcEEEECCCcCCCcchhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhc--CCCEEEEEechhhcC------
Confidence 37899999999753211 111 235667777754544444 433 245777777643210
Q ss_pred HCCCCCCCcEEEeecccHHHHHHHHHHHcCC-CCCCeee
Q 019990 144 FAPSIPAKNITCLTRLDHNRAMGQISERLKV-HVSDVKN 181 (332)
Q Consensus 144 ~~~~~~~~~i~~~t~l~~~r~~~~~a~~~~v-~~~~v~~ 181 (332)
+.+....|+.+|.....+...+++.+.- .+..++.
T Consensus 173 ---~~~~~~~Y~~sK~a~~~l~~~la~e~~~~~~~gi~v 208 (272)
T 1yb1_A 173 ---SVPFLLAYCSSKFAAVGFHKTLTDELAALQITGVKT 208 (272)
T ss_dssp ---CHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCTTEEE
T ss_pred ---CCCCchhHHHHHHHHHHHHHHHHHHHHHhCCCCeEE
Confidence 0011113466666667777777776521 1344554
|
| >2c07_A 3-oxoacyl-(acyl-carrier protein) reductase; oxidoreductase, FABG, short-chain alcohol reductase, fatty acid biosynthesis, apicoplast; 1.5A {Plasmodium falciparum} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=98.72 E-value=1.1e-08 Score=91.82 Aligned_cols=155 Identities=15% Similarity=0.189 Sum_probs=91.0
Q ss_pred CcEEEEEcCCChhHHHHHHHHHhcccCCCCCCeEEEEEecccchhhhhhhHhhhhhhc--c-CCccceEEeCCHHHHh--
Q 019990 5 PLRVLVTGAAGQIGYALVPMIARGIMLGPDQPVILHMLDIEPAAEALNGVKMELIDAA--F-PLLKGVVATTDVVEAC-- 79 (332)
Q Consensus 5 ~~kI~VtGaaG~IGs~l~~~L~~~~~~~~~~~~~i~l~D~~~~~~~~~~~~~dl~~~~--~-~~~~~v~~~~~~~~a~-- 79 (332)
.++|+||||+|+||++++..|++.|. +|++++++. +.+.....++.... . ....|++...++.+++
T Consensus 44 ~k~vlITGasggIG~~la~~L~~~G~-------~V~~~~r~~--~~~~~~~~~l~~~~~~~~~~~~Dl~d~~~v~~~~~~ 114 (285)
T 2c07_A 44 NKVALVTGAGRGIGREIAKMLAKSVS-------HVICISRTQ--KSCDSVVDEIKSFGYESSGYAGDVSKKEEISEVINK 114 (285)
T ss_dssp SCEEEEESTTSHHHHHHHHHHTTTSS-------EEEEEESSH--HHHHHHHHHHHTTTCCEEEEECCTTCHHHHHHHHHH
T ss_pred CCEEEEECCCcHHHHHHHHHHHHcCC-------EEEEEcCCH--HHHHHHHHHHHhcCCceeEEECCCCCHHHHHHHHHH
Confidence 46899999999999999999998875 788888643 22332223332211 0 1113443333333333
Q ss_pred -----CCCcEEEEecCCCCCC---CCCh---hHHHhhhHHHHHHHHHHH----HhhcCCCcEEEEEeCChhhHHHHHHHH
Q 019990 80 -----KDVNIAVMVGGFPRKE---GMER---KDVMSKNVSIYKAQASAL----EKHAAPNCKVLVVANPANTNALILKEF 144 (332)
Q Consensus 80 -----~~aDiVi~~ag~~~~~---~~~~---~~~~~~N~~~~~~i~~~i----~~~~~~~~~viv~snp~~~~~~~~~~~ 144 (332)
.+.|+||+.||..... ..+. ...+..|+.....+.+.+ .+.. ..++|++|+....
T Consensus 115 ~~~~~~~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~--~~~iv~isS~~~~-------- 184 (285)
T 2c07_A 115 ILTEHKNVDILVNNAGITRDNLFLRMKNDEWEDVLRTNLNSLFYITQPISKRMINNR--YGRIINISSIVGL-------- 184 (285)
T ss_dssp HHHHCSCCCEEEECCCCCCCCCTTTCCHHHHHHHHHHHTTHHHHHHHHHHHHHHHHT--CEEEEEECCTHHH--------
T ss_pred HHHhcCCCCEEEECCCCCCCCchhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhCC--CCEEEEECChhhc--------
Confidence 4789999999975321 1222 235677777754444444 3432 3577777764321
Q ss_pred CCCCCCCcEEEeecccHHHHHHHHHHHcCCCCCCeee
Q 019990 145 APSIPAKNITCLTRLDHNRAMGQISERLKVHVSDVKN 181 (332)
Q Consensus 145 ~~~~~~~~i~~~t~l~~~r~~~~~a~~~~v~~~~v~~ 181 (332)
.+.+....|+.+|.....+...+++.+. +..++.
T Consensus 185 -~~~~~~~~Y~asK~a~~~~~~~la~e~~--~~gi~v 218 (285)
T 2c07_A 185 -TGNVGQANYSSSKAGVIGFTKSLAKELA--SRNITV 218 (285)
T ss_dssp -HCCTTCHHHHHHHHHHHHHHHHHHHHHG--GGTEEE
T ss_pred -cCCCCCchHHHHHHHHHHHHHHHHHHHH--HhCcEE
Confidence 1223334577788877778878887763 334553
|
| >2ag5_A DHRS6, dehydrogenase/reductase (SDR family) member 6; protein-CO-factor complex, structural genomics, structural G consortium, SGC, oxidoreductase; HET: NAD; 1.84A {Homo sapiens} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=98.72 E-value=1.5e-08 Score=88.98 Aligned_cols=149 Identities=15% Similarity=0.127 Sum_probs=88.4
Q ss_pred CCcEEEEEcCCChhHHHHHHHHHhcccCCCCCCeEEEEEecccchhhhhhhHhhhhhhccCCccceEEeCCHHHH---hC
Q 019990 4 NPLRVLVTGAAGQIGYALVPMIARGIMLGPDQPVILHMLDIEPAAEALNGVKMELIDAAFPLLKGVVATTDVVEA---CK 80 (332)
Q Consensus 4 ~~~kI~VtGaaG~IGs~l~~~L~~~~~~~~~~~~~i~l~D~~~~~~~~~~~~~dl~~~~~~~~~~v~~~~~~~~a---~~ 80 (332)
+.++|+||||+|+||++++..|++.|. +|++.|++. +.+.... ++... .....|++...++.++ +.
T Consensus 5 ~~k~vlVTGas~gIG~~ia~~l~~~G~-------~V~~~~r~~--~~~~~~~-~~~~~-~~~~~D~~~~~~~~~~~~~~~ 73 (246)
T 2ag5_A 5 DGKVIILTAAAQGIGQAAALAFAREGA-------KVIATDINE--SKLQELE-KYPGI-QTRVLDVTKKKQIDQFANEVE 73 (246)
T ss_dssp TTCEEEESSTTSHHHHHHHHHHHHTTC-------EEEEEESCH--HHHGGGG-GSTTE-EEEECCTTCHHHHHHHHHHCS
T ss_pred CCCEEEEeCCCcHHHHHHHHHHHHCCC-------EEEEEECCH--HHHHHHH-hccCc-eEEEeeCCCHHHHHHHHHHhC
Confidence 457899999999999999999999885 899999853 2232211 22111 0111233332333332 45
Q ss_pred CCcEEEEecCCCCCC---CCChh---HHHhhhHHHHHHHHHHHHhhc--CCCcEEEEEeCChhhHHHHHHHHCCCCC-CC
Q 019990 81 DVNIAVMVGGFPRKE---GMERK---DVMSKNVSIYKAQASALEKHA--APNCKVLVVANPANTNALILKEFAPSIP-AK 151 (332)
Q Consensus 81 ~aDiVi~~ag~~~~~---~~~~~---~~~~~N~~~~~~i~~~i~~~~--~~~~~viv~snp~~~~~~~~~~~~~~~~-~~ 151 (332)
..|++|+.||..... ..+.+ ..+..|+.....+.+++..+- ....++|++|+.... .+.+ ..
T Consensus 74 ~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~n~~g~~~~~~~~~~~~~~~~~g~iv~isS~~~~---------~~~~~~~ 144 (246)
T 2ag5_A 74 RLDVLFNVAGFVHHGTVLDCEEKDWDFSMNLNVRSMYLMIKAFLPKMLAQKSGNIINMSSVASS---------VKGVVNR 144 (246)
T ss_dssp CCSEEEECCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCSBTT---------TBCCTTB
T ss_pred CCCEEEECCccCCCCCcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCceEEEEechHhC---------cCCCCCC
Confidence 789999999975321 11222 345677776666555543220 024577777764321 1122 23
Q ss_pred cEEEeecccHHHHHHHHHHHc
Q 019990 152 NITCLTRLDHNRAMGQISERL 172 (332)
Q Consensus 152 ~i~~~t~l~~~r~~~~~a~~~ 172 (332)
..|+.+|.....+.+.+++.+
T Consensus 145 ~~Y~~sK~a~~~~~~~la~e~ 165 (246)
T 2ag5_A 145 CVYSTTKAAVIGLTKSVAADF 165 (246)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHHHHHh
Confidence 357778887788888888776
|
| >3v8b_A Putative dehydrogenase, possibly 3-oxoacyl-[acyl- protein] reductase; PSI-biology, structural genomics, protein structure initiati nysgrc; 2.70A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=98.72 E-value=7e-08 Score=86.62 Aligned_cols=163 Identities=16% Similarity=0.128 Sum_probs=99.6
Q ss_pred CCcEEEEEcCCChhHHHHHHHHHhcccCCCCCCeEEEEEecccchhhhhhhHhhhhhhcc---CCccceEEeCCHHHHh-
Q 019990 4 NPLRVLVTGAAGQIGYALVPMIARGIMLGPDQPVILHMLDIEPAAEALNGVKMELIDAAF---PLLKGVVATTDVVEAC- 79 (332)
Q Consensus 4 ~~~kI~VtGaaG~IGs~l~~~L~~~~~~~~~~~~~i~l~D~~~~~~~~~~~~~dl~~~~~---~~~~~v~~~~~~~~a~- 79 (332)
+.++++||||+|+||.+++..|++.|. +|+++|++. +.+.....++..... ....|++...++.+++
T Consensus 27 ~~k~~lVTGas~GIG~aia~~la~~G~-------~V~~~~r~~--~~~~~~~~~l~~~~~~~~~~~~Dv~d~~~v~~~~~ 97 (283)
T 3v8b_A 27 PSPVALITGAGSGIGRATALALAADGV-------TVGALGRTR--TEVEEVADEIVGAGGQAIALEADVSDELQMRNAVR 97 (283)
T ss_dssp CCCEEEEESCSSHHHHHHHHHHHHTTC-------EEEEEESSH--HHHHHHHHHHTTTTCCEEEEECCTTCHHHHHHHHH
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHCCC-------EEEEEeCCH--HHHHHHHHHHHhcCCcEEEEEccCCCHHHHHHHHH
Confidence 456799999999999999999999885 899999864 334333334432111 1123444333333333
Q ss_pred ------CCCcEEEEecCCCCC--C--CCChh---HHHhhhHHHHHHHHHHH----HhhcCCCcEEEEEeCChhhHHHHHH
Q 019990 80 ------KDVNIAVMVGGFPRK--E--GMERK---DVMSKNVSIYKAQASAL----EKHAAPNCKVLVVANPANTNALILK 142 (332)
Q Consensus 80 ------~~aDiVi~~ag~~~~--~--~~~~~---~~~~~N~~~~~~i~~~i----~~~~~~~~~viv~snp~~~~~~~~~ 142 (332)
...|++|+.||.... + ..+.+ ..++.|+.....+.+++ ++. ..+++|++|+.....
T Consensus 98 ~~~~~~g~iD~lVnnAg~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~m~~~--~~g~Iv~isS~~~~~----- 170 (283)
T 3v8b_A 98 DLVLKFGHLDIVVANAGINGVWAPIDDLKPFEWDETIAVNLRGTFLTLHLTVPYLKQR--GGGAIVVVSSINGTR----- 170 (283)
T ss_dssp HHHHHHSCCCEEEECCCCCCCBCCTTTSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHH--TCEEEEEECCSBTTT-----
T ss_pred HHHHHhCCCCEEEECCCCCCCCCchhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHc--CCceEEEEcChhhcc-----
Confidence 378999999997421 1 22222 35677877666665555 444 246777777643210
Q ss_pred HHCCCCCCCcEEEeecccHHHHHHHHHHHcCCCCCCeeeeEEEec
Q 019990 143 EFAPSIPAKNITCLTRLDHNRAMGQISERLKVHVSDVKNVIIWGN 187 (332)
Q Consensus 143 ~~~~~~~~~~i~~~t~l~~~r~~~~~a~~~~v~~~~v~~~~V~G~ 187 (332)
..+.+....|+.+|.....+.+.++..++ +..|+. +.+-+
T Consensus 171 --~~~~~~~~~Y~asKaa~~~l~~~la~e~~--~~gI~v-n~v~P 210 (283)
T 3v8b_A 171 --TFTTPGATAYTATKAAQVAIVQQLALELG--KHHIRV-NAVCP 210 (283)
T ss_dssp --BCCSTTCHHHHHHHHHHHHHHHHHHHHTT--TTTEEE-EEEEE
T ss_pred --CCCCCCchHHHHHHHHHHHHHHHHHHHhC--ccCcEE-EEEEe
Confidence 01223334678888888888888888875 456764 33443
|
| >3i4f_A 3-oxoacyl-[acyl-carrier protein] reductase; structural genomics, 3-oxoacyl-reductase, PSI-2; 2.39A {Bacillus thuringiensis serovar kurstakorganism_taxid} SCOP: c.2.1.0 | Back alignment and structure |
|---|
Probab=98.72 E-value=6.7e-09 Score=92.03 Aligned_cols=159 Identities=9% Similarity=0.080 Sum_probs=93.5
Q ss_pred CCcEEEEEcCCChhHHHHHHHHHhcccCCCCCCeEEEEEecccchhhhhhhHhhhhhhc--c-CCccceEEeCCHHHHhC
Q 019990 4 NPLRVLVTGAAGQIGYALVPMIARGIMLGPDQPVILHMLDIEPAAEALNGVKMELIDAA--F-PLLKGVVATTDVVEACK 80 (332)
Q Consensus 4 ~~~kI~VtGaaG~IGs~l~~~L~~~~~~~~~~~~~i~l~D~~~~~~~~~~~~~dl~~~~--~-~~~~~v~~~~~~~~a~~ 80 (332)
.+++++||||+|+||.+++..|++.|. +|++.+.+.. +........+.... . ....|++...++.++++
T Consensus 6 ~~k~vlVTGas~gIG~~~a~~l~~~G~-------~v~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~v~~~~~ 77 (264)
T 3i4f_A 6 FVRHALITAGTKGLGKQVTEKLLAKGY-------SVTVTYHSDT-TAMETMKETYKDVEERLQFVQADVTKKEDLHKIVE 77 (264)
T ss_dssp CCCEEEETTTTSHHHHHHHHHHHHTTC-------EEEEEESSCH-HHHHHHHHHTGGGGGGEEEEECCTTSHHHHHHHHH
T ss_pred ccCEEEEeCCCchhHHHHHHHHHHCCC-------EEEEEcCCCh-HHHHHHHHHHHhcCCceEEEEecCCCHHHHHHHHH
Confidence 467899999999999999999999885 7888876532 12221111111110 0 11234443333444333
Q ss_pred -------CCcEEEEecCC--CCC-C--CCCh---hHHHhhhHHHHHHHHHHH----HhhcCCCcEEEEEeCChhhHHHHH
Q 019990 81 -------DVNIAVMVGGF--PRK-E--GMER---KDVMSKNVSIYKAQASAL----EKHAAPNCKVLVVANPANTNALIL 141 (332)
Q Consensus 81 -------~aDiVi~~ag~--~~~-~--~~~~---~~~~~~N~~~~~~i~~~i----~~~~~~~~~viv~snp~~~~~~~~ 141 (332)
..|++|+.||. ... + ..+. ...++.|+.....+.+.+ ++.. ..++|++|+....
T Consensus 78 ~~~~~~g~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~--~g~iv~iss~~~~----- 150 (264)
T 3i4f_A 78 EAMSHFGKIDFLINNAGPYVFERKKLVDYEEDEWNEMIQGNLTAVFHLLKLVVPVMRKQN--FGRIINYGFQGAD----- 150 (264)
T ss_dssp HHHHHHSCCCEEECCCCCCCCSCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHT--CEEEEEECCTTGG-----
T ss_pred HHHHHhCCCCEEEECCcccccCCCccccCCHHHHHHHHHhccHHHHHHHHHHHHHHHhcC--CCeEEEEeechhc-----
Confidence 78999999994 211 1 1122 235677877766666665 4442 4577777653111
Q ss_pred HHHCCCCCCCcEEEeecccHHHHHHHHHHHcCCCCCCeee
Q 019990 142 KEFAPSIPAKNITCLTRLDHNRAMGQISERLKVHVSDVKN 181 (332)
Q Consensus 142 ~~~~~~~~~~~i~~~t~l~~~r~~~~~a~~~~v~~~~v~~ 181 (332)
. ..+++....|+.+|.....+.+.++..+. +..|+.
T Consensus 151 -~-~~~~~~~~~Y~asKaa~~~~~~~la~e~~--~~gi~v 186 (264)
T 3i4f_A 151 -S-APGWIYRSAFAAAKVGLVSLTKTVAYEEA--EYGITA 186 (264)
T ss_dssp -G-CCCCTTCHHHHHHHHHHHHHHHHHHHHHG--GGTEEE
T ss_pred -c-cCCCCCCchhHHHHHHHHHHHHHHHHHhh--hcCcEE
Confidence 0 12344445678888888888888888754 344654
|
| >3gvc_A Oxidoreductase, probable short-chain type dehydrogenase/reductase; ssgcid, decode, niaid, UWPPG, SBRI, structural genomics; 2.45A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=98.72 E-value=1.3e-08 Score=91.28 Aligned_cols=157 Identities=13% Similarity=0.097 Sum_probs=95.3
Q ss_pred CcEEEEEcCCChhHHHHHHHHHhcccCCCCCCeEEEEEecccchhhhhhhHhhhhhhccCCccceEEeCCHHHHh-----
Q 019990 5 PLRVLVTGAAGQIGYALVPMIARGIMLGPDQPVILHMLDIEPAAEALNGVKMELIDAAFPLLKGVVATTDVVEAC----- 79 (332)
Q Consensus 5 ~~kI~VtGaaG~IGs~l~~~L~~~~~~~~~~~~~i~l~D~~~~~~~~~~~~~dl~~~~~~~~~~v~~~~~~~~a~----- 79 (332)
.++++||||+|+||++++..|++.|. +|+++|++. +.+.....++.........|++...++.+.+
T Consensus 29 gk~vlVTGas~gIG~aia~~la~~G~-------~V~~~~r~~--~~~~~~~~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~ 99 (277)
T 3gvc_A 29 GKVAIVTGAGAGIGLAVARRLADEGC-------HVLCADIDG--DAADAAATKIGCGAAACRVDVSDEQQIIAMVDACVA 99 (277)
T ss_dssp TCEEEETTTTSTHHHHHHHHHHHTTC-------EEEEEESSH--HHHHHHHHHHCSSCEEEECCTTCHHHHHHHHHHHHH
T ss_pred CCEEEEECCCcHHHHHHHHHHHHCCC-------EEEEEeCCH--HHHHHHHHHcCCcceEEEecCCCHHHHHHHHHHHHH
Confidence 46799999999999999999999885 899999863 2333222222111011123444333333333
Q ss_pred --CCCcEEEEecCCCCCC---CCCh---hHHHhhhHHHHHHHHHHHHhhc--CCCcEEEEEeCChhhHHHHHHHHCCCCC
Q 019990 80 --KDVNIAVMVGGFPRKE---GMER---KDVMSKNVSIYKAQASALEKHA--APNCKVLVVANPANTNALILKEFAPSIP 149 (332)
Q Consensus 80 --~~aDiVi~~ag~~~~~---~~~~---~~~~~~N~~~~~~i~~~i~~~~--~~~~~viv~snp~~~~~~~~~~~~~~~~ 149 (332)
...|++|+.||..... ..+. ...++.|+.....+.+++..+- ...+++|++|+.... .+.+
T Consensus 100 ~~g~iD~lvnnAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~m~~~~~g~Iv~isS~~~~---------~~~~ 170 (277)
T 3gvc_A 100 AFGGVDKLVANAGVVHLASLIDTTVEDFDRVIAINLRGAWLCTKHAAPRMIERGGGAIVNLSSLAGQ---------VAVG 170 (277)
T ss_dssp HHSSCCEEEECCCCCCCBCTTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCEEEEEECCGGGT---------SCCT
T ss_pred HcCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCcEEEEEcchhhc---------cCCC
Confidence 3789999999974321 1222 2356778877666655554321 134677777764321 2334
Q ss_pred CCcEEEeecccHHHHHHHHHHHcCCCCCCeee
Q 019990 150 AKNITCLTRLDHNRAMGQISERLKVHVSDVKN 181 (332)
Q Consensus 150 ~~~i~~~t~l~~~r~~~~~a~~~~v~~~~v~~ 181 (332)
....|+.+|.....+.+.++..++ +..|+.
T Consensus 171 ~~~~Y~asKaa~~~l~~~la~e~~--~~gI~v 200 (277)
T 3gvc_A 171 GTGAYGMSKAGIIQLSRITAAELR--SSGIRS 200 (277)
T ss_dssp TBHHHHHHHHHHHHHHHHHHHHHG--GGTEEE
T ss_pred CchhHHHHHHHHHHHHHHHHHHhc--ccCeEE
Confidence 444678888888888888888764 345664
|
| >1edo_A Beta-keto acyl carrier protein reductase; nucleotide fold, rossmann fold, oxidoreductase; HET: NAP; 2.30A {Brassica napus} SCOP: c.2.1.2 PDB: 2cdh_G | Back alignment and structure |
|---|
Probab=98.71 E-value=8.4e-09 Score=90.12 Aligned_cols=156 Identities=15% Similarity=0.114 Sum_probs=91.3
Q ss_pred cEEEEEcCCChhHHHHHHHHHhcccCCCCCCeEEEEE-ecccchhhhhhhHhhhhhhc--c-CCccceEEeCCHHHHhC-
Q 019990 6 LRVLVTGAAGQIGYALVPMIARGIMLGPDQPVILHML-DIEPAAEALNGVKMELIDAA--F-PLLKGVVATTDVVEACK- 80 (332)
Q Consensus 6 ~kI~VtGaaG~IGs~l~~~L~~~~~~~~~~~~~i~l~-D~~~~~~~~~~~~~dl~~~~--~-~~~~~v~~~~~~~~a~~- 80 (332)
++|+||||+|+||++++..|++.|. ++++. +++. +.+.....++.... . ....|++...++.++++
T Consensus 2 k~vlVTGasggiG~~la~~l~~~G~-------~v~~~~~r~~--~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~ 72 (244)
T 1edo_A 2 PVVVVTGASRGIGKAIALSLGKAGC-------KVLVNYARSA--KAAEEVSKQIEAYGGQAITFGGDVSKEADVEAMMKT 72 (244)
T ss_dssp CEEEETTCSSHHHHHHHHHHHHTTC-------EEEEEESSCH--HHHHHHHHHHHHHTCEEEEEECCTTSHHHHHHHHHH
T ss_pred CEEEEeCCCchHHHHHHHHHHHCCC-------EEEEEcCCCH--HHHHHHHHHHHhcCCcEEEEeCCCCCHHHHHHHHHH
Confidence 5799999999999999999999885 77774 5542 22222222232111 0 11234433333444443
Q ss_pred ------CCcEEEEecCCCCCC---CCCh---hHHHhhhHHHHHHHHHHHHhhc--CCCcEEEEEeCChhhHHHHHHHHCC
Q 019990 81 ------DVNIAVMVGGFPRKE---GMER---KDVMSKNVSIYKAQASALEKHA--APNCKVLVVANPANTNALILKEFAP 146 (332)
Q Consensus 81 ------~aDiVi~~ag~~~~~---~~~~---~~~~~~N~~~~~~i~~~i~~~~--~~~~~viv~snp~~~~~~~~~~~~~ 146 (332)
+.|+|||.||..... ..+. ...++.|+.....+.+.+.++- ....++|++|+.... .
T Consensus 73 ~~~~~g~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~iv~~sS~~~~-------~-- 143 (244)
T 1edo_A 73 AIDAWGTIDVVVNNAGITRDTLLIRMKKSQWDEVIDLNLTGVFLCTQAATKIMMKKRKGRIINIASVVGL-------I-- 143 (244)
T ss_dssp HHHHSSCCSEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCTHHH-------H--
T ss_pred HHHHcCCCCEEEECCCCCCCcCcccCCHHHHHHHHHhhhHHHHHHHHHHHHHHHhcCCCEEEEECChhhc-------C--
Confidence 789999999975421 1121 2356778877666666655431 024577777764221 1
Q ss_pred CCCCCcEEEeecccHHHHHHHHHHHcCCCCCCeee
Q 019990 147 SIPAKNITCLTRLDHNRAMGQISERLKVHVSDVKN 181 (332)
Q Consensus 147 ~~~~~~i~~~t~l~~~r~~~~~a~~~~v~~~~v~~ 181 (332)
+.+....|+.+|.....+...+++.+. +..++.
T Consensus 144 ~~~~~~~Y~~sK~a~~~~~~~la~e~~--~~gi~v 176 (244)
T 1edo_A 144 GNIGQANYAAAKAGVIGFSKTAAREGA--SRNINV 176 (244)
T ss_dssp CCTTCHHHHHHHHHHHHHHHHHHHHHH--TTTEEE
T ss_pred CCCCCccchhhHHHHHHHHHHHHHHhh--hcCCEE
Confidence 233344577778777777777777753 344553
|
| >3pxx_A Carveol dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, NAD, tuberculosis; HET: NAD; 2.00A {Mycobacterium avium} SCOP: c.2.1.0 | Back alignment and structure |
|---|
Probab=98.71 E-value=8e-08 Score=86.03 Aligned_cols=162 Identities=15% Similarity=0.067 Sum_probs=96.2
Q ss_pred CCcEEEEEcCCChhHHHHHHHHHhcccCCCCCCeEEEEEecccc----------hhhhhhhHhhhhhhcc---CCccceE
Q 019990 4 NPLRVLVTGAAGQIGYALVPMIARGIMLGPDQPVILHMLDIEPA----------AEALNGVKMELIDAAF---PLLKGVV 70 (332)
Q Consensus 4 ~~~kI~VtGaaG~IGs~l~~~L~~~~~~~~~~~~~i~l~D~~~~----------~~~~~~~~~dl~~~~~---~~~~~v~ 70 (332)
+.++|+||||+|+||.+++..|++.|. +|+++|++.. .+.+.....++..... ....|++
T Consensus 9 ~gk~vlVTGas~gIG~~ia~~l~~~G~-------~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~ 81 (287)
T 3pxx_A 9 QDKVVLVTGGARGQGRSHAVKLAEEGA-------DIILFDICHDIETNEYPLATSRDLEEAGLEVEKTGRKAYTAEVDVR 81 (287)
T ss_dssp TTCEEEEETTTSHHHHHHHHHHHHTTC-------EEEEEECCSCCTTSCSCCCCHHHHHHHHHHHHHTTSCEEEEECCTT
T ss_pred CCCEEEEeCCCChHHHHHHHHHHHCCC-------eEEEEcccccccccccchhhhHHHHHHHHHHHhcCCceEEEEccCC
Confidence 457899999999999999999999886 8999987521 1122222222221110 1123444
Q ss_pred EeCCHHHHhC-------CCcEEEEecCCCCCC-CCCh---hHHHhhhHHHHHHHHHHHHhhcCCCcEEEEEeCChhhHHH
Q 019990 71 ATTDVVEACK-------DVNIAVMVGGFPRKE-GMER---KDVMSKNVSIYKAQASALEKHAAPNCKVLVVANPANTNAL 139 (332)
Q Consensus 71 ~~~~~~~a~~-------~aDiVi~~ag~~~~~-~~~~---~~~~~~N~~~~~~i~~~i~~~~~~~~~viv~snp~~~~~~ 139 (332)
...++.+.++ ..|++||.||..... ..+. ...++.|+.....+.+.+..+-...+++|++|+.......
T Consensus 82 ~~~~v~~~~~~~~~~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~g~iv~isS~~~~~~~ 161 (287)
T 3pxx_A 82 DRAAVSRELANAVAEFGKLDVVVANAGICPLGAHLPVQAFADAFDVDFVGVINTVHAALPYLTSGASIITTGSVAGLIAA 161 (287)
T ss_dssp CHHHHHHHHHHHHHHHSCCCEEEECCCCCCCCTTCCTHHHHHHHHHHTHHHHHHHHHHGGGCCTTCEEEEECCHHHHHHH
T ss_pred CHHHHHHHHHHHHHHcCCCCEEEECCCcCcccCcCCHHHHHHHhhhhhhhhHHHHHHHHHHhhcCcEEEEeccchhcccc
Confidence 3333333333 789999999974321 1222 3467889988888888887764344677777763322111
Q ss_pred HH---HHHCCCCCCCcEEEeecccHHHHHHHHHHHcC
Q 019990 140 IL---KEFAPSIPAKNITCLTRLDHNRAMGQISERLK 173 (332)
Q Consensus 140 ~~---~~~~~~~~~~~i~~~t~l~~~r~~~~~a~~~~ 173 (332)
.. .+. ...+....|+.+|.....+.+.+++.++
T Consensus 162 ~~~~~~~~-~~~~~~~~Y~asK~a~~~~~~~la~e~~ 197 (287)
T 3pxx_A 162 AQPPGAGG-PQGPGGAGYSYAKQLVDSYTLQLAAQLA 197 (287)
T ss_dssp HCCC------CHHHHHHHHHHHHHHHHHHHHHHHHHG
T ss_pred cccccccc-cCCCccchHHHHHHHHHHHHHHHHHHHh
Confidence 00 000 0001112467788888888888888874
|
| >3uf0_A Short-chain dehydrogenase/reductase SDR; gluconate, gluconate 5-dehydratase, NAD(P) dependent, enzyme initiative, EFI, oxidoreductase; HET: NAP; 2.00A {Beutenbergia cavernae} SCOP: c.2.1.0 | Back alignment and structure |
|---|
Probab=98.70 E-value=2.1e-08 Score=89.64 Aligned_cols=155 Identities=13% Similarity=0.120 Sum_probs=93.9
Q ss_pred CCcEEEEEcCCChhHHHHHHHHHhcccCCCCCCeEEEEEecccchhhhhhhHhhhhhhc--c-CCccceEEeCCHHHH--
Q 019990 4 NPLRVLVTGAAGQIGYALVPMIARGIMLGPDQPVILHMLDIEPAAEALNGVKMELIDAA--F-PLLKGVVATTDVVEA-- 78 (332)
Q Consensus 4 ~~~kI~VtGaaG~IGs~l~~~L~~~~~~~~~~~~~i~l~D~~~~~~~~~~~~~dl~~~~--~-~~~~~v~~~~~~~~a-- 78 (332)
+.++++||||+|+||++++..|++.|. +|++.|+.. .+.....++.... . ....|++...+..+.
T Consensus 30 ~gk~~lVTGas~GIG~aia~~la~~G~-------~V~~~~r~~---~~~~~~~~~~~~~~~~~~~~~Dv~d~~~v~~~~~ 99 (273)
T 3uf0_A 30 AGRTAVVTGAGSGIGRAIAHGYARAGA-------HVLAWGRTD---GVKEVADEIADGGGSAEAVVADLADLEGAANVAE 99 (273)
T ss_dssp TTCEEEEETTTSHHHHHHHHHHHHTTC-------EEEEEESST---HHHHHHHHHHTTTCEEEEEECCTTCHHHHHHHHH
T ss_pred CCCEEEEeCCCcHHHHHHHHHHHHCCC-------EEEEEcCHH---HHHHHHHHHHhcCCcEEEEEecCCCHHHHHHHHH
Confidence 357899999999999999999999885 899998542 2222233332211 0 111233332222222
Q ss_pred ----hCCCcEEEEecCCCCCCC---CCh---hHHHhhhHHHHHHHHHHH----HhhcCCCcEEEEEeCChhhHHHHHHHH
Q 019990 79 ----CKDVNIAVMVGGFPRKEG---MER---KDVMSKNVSIYKAQASAL----EKHAAPNCKVLVVANPANTNALILKEF 144 (332)
Q Consensus 79 ----~~~aDiVi~~ag~~~~~~---~~~---~~~~~~N~~~~~~i~~~i----~~~~~~~~~viv~snp~~~~~~~~~~~ 144 (332)
+...|++|+.||...... .+. ...++.|+.....+.+++ .+.+ .+++|++|+....
T Consensus 100 ~~~~~g~iD~lv~nAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~m~~~~--~g~IV~isS~~~~-------- 169 (273)
T 3uf0_A 100 ELAATRRVDVLVNNAGIIARAPAEEVSLGRWREVLTVNLDAAWVLSRSFGTAMLAHG--SGRIVTIASMLSF-------- 169 (273)
T ss_dssp HHHHHSCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHT--CEEEEEECCGGGT--------
T ss_pred HHHhcCCCcEEEECCCCCCCCCchhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcC--CCEEEEEcchHhc--------
Confidence 237899999999753211 122 235677877766665554 4432 4577777764321
Q ss_pred CCCCCCCcEEEeecccHHHHHHHHHHHcCCCCCCeee
Q 019990 145 APSIPAKNITCLTRLDHNRAMGQISERLKVHVSDVKN 181 (332)
Q Consensus 145 ~~~~~~~~i~~~t~l~~~r~~~~~a~~~~v~~~~v~~ 181 (332)
.+.+....|+.+|.....+.+.++..++ +..|+.
T Consensus 170 -~~~~~~~~Y~asKaa~~~l~~~la~e~~--~~gI~v 203 (273)
T 3uf0_A 170 -QGGRNVAAYAASKHAVVGLTRALASEWA--GRGVGV 203 (273)
T ss_dssp -SCCSSCHHHHHHHHHHHHHHHHHHHHHG--GGTEEE
T ss_pred -CCCCCChhHHHHHHHHHHHHHHHHHHHh--hcCcEE
Confidence 2233344678888888888888888864 345664
|
| >3v2h_A D-beta-hydroxybutyrate dehydrogenase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 3.00A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=98.70 E-value=3.7e-08 Score=88.33 Aligned_cols=157 Identities=13% Similarity=0.138 Sum_probs=95.9
Q ss_pred CCcEEEEEcCCChhHHHHHHHHHhcccCCCCCCeEEEEEecccchhhhhhhHhhhhhh---cc-CCccceEEeCCHHHHh
Q 019990 4 NPLRVLVTGAAGQIGYALVPMIARGIMLGPDQPVILHMLDIEPAAEALNGVKMELIDA---AF-PLLKGVVATTDVVEAC 79 (332)
Q Consensus 4 ~~~kI~VtGaaG~IGs~l~~~L~~~~~~~~~~~~~i~l~D~~~~~~~~~~~~~dl~~~---~~-~~~~~v~~~~~~~~a~ 79 (332)
+.++++||||+|+||++++..|++.|. +|++.|++.. +.+.....++... .. ....|++...++.+++
T Consensus 24 ~~k~~lVTGas~GIG~~ia~~la~~G~-------~V~~~~r~~~-~~~~~~~~~~~~~~~~~~~~~~~Dv~d~~~v~~~~ 95 (281)
T 3v2h_A 24 MTKTAVITGSTSGIGLAIARTLAKAGA-------NIVLNGFGAP-DEIRTVTDEVAGLSSGTVLHHPADMTKPSEIADMM 95 (281)
T ss_dssp TTCEEEEETCSSHHHHHHHHHHHHTTC-------EEEEECCCCH-HHHHHHHHHHHTTCSSCEEEECCCTTCHHHHHHHH
T ss_pred CCCEEEEeCCCcHHHHHHHHHHHHCCC-------EEEEEeCCCh-HHHHHHHHHHhhccCCcEEEEeCCCCCHHHHHHHH
Confidence 346899999999999999999999885 8999997432 2333333333221 00 1123444433333333
Q ss_pred -------CCCcEEEEecCCCCCCC---CChh---HHHhhhHHHHHHHHHHH----HhhcCCCcEEEEEeCChhhHHHHHH
Q 019990 80 -------KDVNIAVMVGGFPRKEG---MERK---DVMSKNVSIYKAQASAL----EKHAAPNCKVLVVANPANTNALILK 142 (332)
Q Consensus 80 -------~~aDiVi~~ag~~~~~~---~~~~---~~~~~N~~~~~~i~~~i----~~~~~~~~~viv~snp~~~~~~~~~ 142 (332)
...|++|+.||...... .+.+ ..+..|+.....+.+++ ++.. .+++|++|+....
T Consensus 96 ~~~~~~~g~iD~lv~nAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~~--~g~iv~isS~~~~------ 167 (281)
T 3v2h_A 96 AMVADRFGGADILVNNAGVQFVEKIEDFPVEQWDRIIAVNLSSSFHTIRGAIPPMKKKG--WGRIINIASAHGL------ 167 (281)
T ss_dssp HHHHHHTSSCSEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHT--CEEEEEECCGGGT------
T ss_pred HHHHHHCCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcC--CCEEEEECCcccc------
Confidence 37899999999753221 1222 35677877766666654 4432 4577777764321
Q ss_pred HHCCCCCCCcEEEeecccHHHHHHHHHHHcCCCCCCeee
Q 019990 143 EFAPSIPAKNITCLTRLDHNRAMGQISERLKVHVSDVKN 181 (332)
Q Consensus 143 ~~~~~~~~~~i~~~t~l~~~r~~~~~a~~~~v~~~~v~~ 181 (332)
.+.+....|+.+|.....+.+.++..++ +..|+.
T Consensus 168 ---~~~~~~~~Y~asKaa~~~l~~~la~e~~--~~gI~v 201 (281)
T 3v2h_A 168 ---VASPFKSAYVAAKHGIMGLTKTVALEVA--ESGVTV 201 (281)
T ss_dssp ---SCCTTCHHHHHHHHHHHHHHHHHHHHHG--GGTEEE
T ss_pred ---cCCCCchHHHHHHHHHHHHHHHHHHHhh--hcCcEE
Confidence 1233344678888888888888888864 334553
|
| >3gem_A Short chain dehydrogenase; structural genomics, APC65077, oxidoreductase, PSI-2, protein structure initiative; 1.83A {Pseudomonas syringae PV} | Back alignment and structure |
|---|
Probab=98.70 E-value=3.2e-08 Score=87.75 Aligned_cols=162 Identities=14% Similarity=0.054 Sum_probs=96.7
Q ss_pred CCCCCcEEEEEcCCChhHHHHHHHHHhcccCCCCCCeEEEEEecccchhhhhhhHhhhhhhcc-CCccceEEeCCHHHHh
Q 019990 1 MAKNPLRVLVTGAAGQIGYALVPMIARGIMLGPDQPVILHMLDIEPAAEALNGVKMELIDAAF-PLLKGVVATTDVVEAC 79 (332)
Q Consensus 1 m~~~~~kI~VtGaaG~IGs~l~~~L~~~~~~~~~~~~~i~l~D~~~~~~~~~~~~~dl~~~~~-~~~~~v~~~~~~~~a~ 79 (332)
|+.+.++|+||||+|+||++++..|++.|. +|++.|++.. .+. ..+..... ....|++...++.+++
T Consensus 23 m~l~~k~vlVTGas~gIG~aia~~l~~~G~-------~V~~~~r~~~--~~~---~~~~~~~~~~~~~Dv~~~~~v~~~~ 90 (260)
T 3gem_A 23 MTLSSAPILITGASQRVGLHCALRLLEHGH-------RVIISYRTEH--ASV---TELRQAGAVALYGDFSCETGIMAFI 90 (260)
T ss_dssp ----CCCEEESSTTSHHHHHHHHHHHHTTC-------CEEEEESSCC--HHH---HHHHHHTCEEEECCTTSHHHHHHHH
T ss_pred cCCCCCEEEEECCCCHHHHHHHHHHHHCCC-------EEEEEeCChH--HHH---HHHHhcCCeEEECCCCCHHHHHHHH
Confidence 334457899999999999999999999885 7999998642 221 11221111 1123443333333333
Q ss_pred -------CCCcEEEEecCCCCCC--CCChh---HHHhhhHHHHHHHHHHHHhhc--CCCcEEEEEeCChhhHHHHHHHHC
Q 019990 80 -------KDVNIAVMVGGFPRKE--GMERK---DVMSKNVSIYKAQASALEKHA--APNCKVLVVANPANTNALILKEFA 145 (332)
Q Consensus 80 -------~~aDiVi~~ag~~~~~--~~~~~---~~~~~N~~~~~~i~~~i~~~~--~~~~~viv~snp~~~~~~~~~~~~ 145 (332)
...|++|+.||..... ..+.+ ..++.|+.....+.+++..+- ...+++|++|+....
T Consensus 91 ~~~~~~~g~iD~lv~nAg~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~~~~m~~~~~g~iv~isS~~~~--------- 161 (260)
T 3gem_A 91 DLLKTQTSSLRAVVHNASEWLAETPGEEADNFTRMFSVHMLAPYLINLHCEPLLTASEVADIVHISDDVTR--------- 161 (260)
T ss_dssp HHHHHHCSCCSEEEECCCCCCCCCTTCHHHHHHHHHHHHTHHHHHHHHHHHHHHHTSSSCEEEEECCGGGG---------
T ss_pred HHHHHhcCCCCEEEECCCccCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcEEEEECChhhc---------
Confidence 3689999999974322 12222 356778777666666554331 123577777764321
Q ss_pred CCCCCCcEEEeecccHHHHHHHHHHHcCCCCCCeeeeEEEec
Q 019990 146 PSIPAKNITCLTRLDHNRAMGQISERLKVHVSDVKNVIIWGN 187 (332)
Q Consensus 146 ~~~~~~~i~~~t~l~~~r~~~~~a~~~~v~~~~v~~~~V~G~ 187 (332)
.+.+....|+.+|.....+.+.++..++- .|+. +.+.+
T Consensus 162 ~~~~~~~~Y~asKaa~~~l~~~la~e~~~---~Irv-n~v~P 199 (260)
T 3gem_A 162 KGSSKHIAYCATKAGLESLTLSFAARFAP---LVKV-NGIAP 199 (260)
T ss_dssp TCCSSCHHHHHHHHHHHHHHHHHHHHHTT---TCEE-EEEEE
T ss_pred CCCCCcHhHHHHHHHHHHHHHHHHHHHCC---CCEE-EEEee
Confidence 23344446788888888888889988874 2664 33444
|
| >2zat_A Dehydrogenase/reductase SDR family member 4; alpha/beta, oxidoreductase; HET: NAP; 1.50A {Sus scrofa} PDB: 3o4r_A* | Back alignment and structure |
|---|
Probab=98.70 E-value=2e-08 Score=88.82 Aligned_cols=162 Identities=14% Similarity=0.086 Sum_probs=95.8
Q ss_pred CcEEEEEcCCChhHHHHHHHHHhcccCCCCCCeEEEEEecccchhhhhhhHhhhhhhc--c-CCccceEEeCCHHHHhC-
Q 019990 5 PLRVLVTGAAGQIGYALVPMIARGIMLGPDQPVILHMLDIEPAAEALNGVKMELIDAA--F-PLLKGVVATTDVVEACK- 80 (332)
Q Consensus 5 ~~kI~VtGaaG~IGs~l~~~L~~~~~~~~~~~~~i~l~D~~~~~~~~~~~~~dl~~~~--~-~~~~~v~~~~~~~~a~~- 80 (332)
.++|+||||+|+||++++..|++.|. +|+++|++. +.+.....++.... . ....|+....++.++++
T Consensus 14 ~k~vlVTGas~gIG~~ia~~l~~~G~-------~V~~~~r~~--~~~~~~~~~l~~~~~~~~~~~~D~~~~~~~~~~~~~ 84 (260)
T 2zat_A 14 NKVALVTASTDGIGLAIARRLAQDGA-------HVVVSSRKQ--ENVDRTVATLQGEGLSVTGTVCHVGKAEDRERLVAM 84 (260)
T ss_dssp TCEEEESSCSSHHHHHHHHHHHHTTC-------EEEEEESCH--HHHHHHHHHHHHTTCCEEEEECCTTCHHHHHHHHHH
T ss_pred CCEEEEECCCcHHHHHHHHHHHHCCC-------EEEEEeCCH--HHHHHHHHHHHhcCCceEEEEccCCCHHHHHHHHHH
Confidence 46899999999999999999999885 899999864 23332223332211 0 01123333333333333
Q ss_pred ------CCcEEEEecCCCCC--C--CCCh---hHHHhhhHHHHHHHHHHHHhhc--CCCcEEEEEeCChhhHHHHHHHHC
Q 019990 81 ------DVNIAVMVGGFPRK--E--GMER---KDVMSKNVSIYKAQASALEKHA--APNCKVLVVANPANTNALILKEFA 145 (332)
Q Consensus 81 ------~aDiVi~~ag~~~~--~--~~~~---~~~~~~N~~~~~~i~~~i~~~~--~~~~~viv~snp~~~~~~~~~~~~ 145 (332)
+.|++||.||.... + ..+. ...++.|+.....+.+++..+- ....++|++|+....
T Consensus 85 ~~~~~g~iD~lv~~Ag~~~~~~~~~~~~~~~~~~~~~~N~~~~~~~~~~~~~~~~~~~~g~iv~isS~~~~--------- 155 (260)
T 2zat_A 85 AVNLHGGVDILVSNAAVNPFFGNIIDATEEVWDKILHVNVKATVLMTKAVVPEMEKRGGGSVLIVSSVGAY--------- 155 (260)
T ss_dssp HHHHHSCCCEEEECCCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHTTCEEEEEECCGGGT---------
T ss_pred HHHHcCCCCEEEECCCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCCEEEEEechhhc---------
Confidence 79999999986421 1 1222 2356778777655555543221 123577777753221
Q ss_pred CCCCCCcEEEeecccHHHHHHHHHHHcCCCCCCeeeeEEEec
Q 019990 146 PSIPAKNITCLTRLDHNRAMGQISERLKVHVSDVKNVIIWGN 187 (332)
Q Consensus 146 ~~~~~~~i~~~t~l~~~r~~~~~a~~~~v~~~~v~~~~V~G~ 187 (332)
.+.++...|+.+|.....+.+.+++.++ +..|+. +++.+
T Consensus 156 ~~~~~~~~Y~~sK~a~~~~~~~la~e~~--~~gi~v-~~v~P 194 (260)
T 2zat_A 156 HPFPNLGPYNVSKTALLGLTKNLAVELA--PRNIRV-NCLAP 194 (260)
T ss_dssp SCCTTBHHHHHHHHHHHHHHHHHHHHHG--GGTEEE-EEEEE
T ss_pred CCCCCchhHHHHHHHHHHHHHHHHHHhc--ccCeEE-EEEEE
Confidence 1234444677788888888888888764 345664 34454
|
| >4ibo_A Gluconate dehydrogenase; enzyme function initiative structural genomics, oxidoreductase; 2.10A {Agrobacterium fabrum} | Back alignment and structure |
|---|
Probab=98.70 E-value=6.2e-08 Score=86.41 Aligned_cols=163 Identities=14% Similarity=0.144 Sum_probs=99.7
Q ss_pred CCcEEEEEcCCChhHHHHHHHHHhcccCCCCCCeEEEEEecccchhhhhhhHhhhhhhc---cCCccceEEeCCHHHHhC
Q 019990 4 NPLRVLVTGAAGQIGYALVPMIARGIMLGPDQPVILHMLDIEPAAEALNGVKMELIDAA---FPLLKGVVATTDVVEACK 80 (332)
Q Consensus 4 ~~~kI~VtGaaG~IGs~l~~~L~~~~~~~~~~~~~i~l~D~~~~~~~~~~~~~dl~~~~---~~~~~~v~~~~~~~~a~~ 80 (332)
+.++++||||+|+||++++..|++.|. +|++.|++. +.+.....++.... .....|++...++.++++
T Consensus 25 ~gk~~lVTGas~gIG~aia~~la~~G~-------~V~~~~r~~--~~~~~~~~~l~~~~~~~~~~~~Dv~d~~~v~~~~~ 95 (271)
T 4ibo_A 25 GGRTALVTGSSRGLGRAMAEGLAVAGA-------RILINGTDP--SRVAQTVQEFRNVGHDAEAVAFDVTSESEIIEAFA 95 (271)
T ss_dssp TTCEEEETTCSSHHHHHHHHHHHHTTC-------EEEECCSCH--HHHHHHHHHHHHTTCCEEECCCCTTCHHHHHHHHH
T ss_pred CCCEEEEeCCCcHHHHHHHHHHHHCCC-------EEEEEeCCH--HHHHHHHHHHHhcCCceEEEEcCCCCHHHHHHHHH
Confidence 357899999999999999999999885 899999854 33443334443211 112235544444444443
Q ss_pred -------CCcEEEEecCCCCCC---CCChh---HHHhhhHHHHHHHHHHHHhhc--CCCcEEEEEeCChhhHHHHHHHHC
Q 019990 81 -------DVNIAVMVGGFPRKE---GMERK---DVMSKNVSIYKAQASALEKHA--APNCKVLVVANPANTNALILKEFA 145 (332)
Q Consensus 81 -------~aDiVi~~ag~~~~~---~~~~~---~~~~~N~~~~~~i~~~i~~~~--~~~~~viv~snp~~~~~~~~~~~~ 145 (332)
..|++|+.||..... ..+.+ ..++.|+.....+.+++..+- ...+++|++|+....
T Consensus 96 ~~~~~~g~iD~lv~nAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~~~g~iV~isS~~~~--------- 166 (271)
T 4ibo_A 96 RLDEQGIDVDILVNNAGIQFRKPMIELETADWQRVIDTNLTSAFMIGREAAKRMIPRGYGKIVNIGSLTSE--------- 166 (271)
T ss_dssp HHHHHTCCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCGGGT---------
T ss_pred HHHHHCCCCCEEEECCCCCCCCCchhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCcEEEEEccHHhC---------
Confidence 789999999974321 12222 346778766655544443321 024577777763321
Q ss_pred CCCCCCcEEEeecccHHHHHHHHHHHcCCCCCCeeeeEEEec
Q 019990 146 PSIPAKNITCLTRLDHNRAMGQISERLKVHVSDVKNVIIWGN 187 (332)
Q Consensus 146 ~~~~~~~i~~~t~l~~~r~~~~~a~~~~v~~~~v~~~~V~G~ 187 (332)
.+.+....|+.+|.....+.+.++..++ +..|+. +.+.+
T Consensus 167 ~~~~~~~~Y~asKaa~~~l~~~la~e~~--~~gI~v-n~v~P 205 (271)
T 4ibo_A 167 LARATVAPYTVAKGGIKMLTRAMAAEWA--QYGIQA-NAIGP 205 (271)
T ss_dssp SBCTTCHHHHHHHHHHHHHHHHHHHHHG--GGTEEE-EEEEE
T ss_pred CCCCCchhHHHHHHHHHHHHHHHHHHHh--hhCeEE-EEEEe
Confidence 2234444678888888888888888865 445664 33443
|
| >3e48_A Putative nucleoside-diphosphate-sugar epimerase; alpha-beta protein., structural genomics, PSI-2, protein STR initiative; 1.60A {Staphylococcus aureus subsp} | Back alignment and structure |
|---|
Probab=98.70 E-value=3.5e-08 Score=88.39 Aligned_cols=104 Identities=13% Similarity=0.176 Sum_probs=71.2
Q ss_pred cEEEEEcCCChhHHHHHHHHHhc-ccCCCCCCeEEEEEecccchhhhhhhHhhhhhhcc-CCccceEEeCCHHHHhCCCc
Q 019990 6 LRVLVTGAAGQIGYALVPMIARG-IMLGPDQPVILHMLDIEPAAEALNGVKMELIDAAF-PLLKGVVATTDVVEACKDVN 83 (332)
Q Consensus 6 ~kI~VtGaaG~IGs~l~~~L~~~-~~~~~~~~~~i~l~D~~~~~~~~~~~~~dl~~~~~-~~~~~v~~~~~~~~a~~~aD 83 (332)
|||+||||+|+||++++..|.+. +. +|++++++.. ... ++..... ....|+....++.++++++|
T Consensus 1 M~ilVtGatG~iG~~l~~~L~~~~g~-------~V~~~~R~~~--~~~----~~~~~~v~~~~~D~~d~~~l~~~~~~~d 67 (289)
T 3e48_A 1 MNIMLTGATGHLGTHITNQAIANHID-------HFHIGVRNVE--KVP----DDWRGKVSVRQLDYFNQESMVEAFKGMD 67 (289)
T ss_dssp CCEEEETTTSHHHHHHHHHHHHTTCT-------TEEEEESSGG--GSC----GGGBTTBEEEECCTTCHHHHHHHTTTCS
T ss_pred CEEEEEcCCchHHHHHHHHHhhCCCC-------cEEEEECCHH--HHH----HhhhCCCEEEEcCCCCHHHHHHHHhCCC
Confidence 47999999999999999998876 54 7888887542 111 1111111 11235544556778899999
Q ss_pred EEEEecCCCCCCCCChhHHHhhhHHHHHHHHHHHHhhcCCCcEEEEEeC
Q 019990 84 IAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEKHAAPNCKVLVVAN 132 (332)
Q Consensus 84 iVi~~ag~~~~~~~~~~~~~~~N~~~~~~i~~~i~~~~~~~~~viv~sn 132 (332)
+|||+++.... ...|+..++++++++++.+ . .++|++|.
T Consensus 68 ~vi~~a~~~~~--------~~~~~~~~~~l~~aa~~~g-v-~~iv~~Ss 106 (289)
T 3e48_A 68 TVVFIPSIIHP--------SFKRIPEVENLVYAAKQSG-V-AHIIFIGY 106 (289)
T ss_dssp EEEECCCCCCS--------HHHHHHHHHHHHHHHHHTT-C-CEEEEEEE
T ss_pred EEEEeCCCCcc--------chhhHHHHHHHHHHHHHcC-C-CEEEEEcc
Confidence 99999975421 1347888899999999875 2 26666664
|
| >2bd0_A Sepiapterin reductase; oxidoreductase; HET: NAP BIO; 1.70A {Chlorobium tepidum} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=98.70 E-value=1.3e-08 Score=88.86 Aligned_cols=164 Identities=17% Similarity=0.201 Sum_probs=93.2
Q ss_pred CcEEEEEcCCChhHHHHHHHHHhcccCCCCCCeEEEEEecccchhhhhhhHhhhhhhc--c-CCccceEEeCCHHHHhC-
Q 019990 5 PLRVLVTGAAGQIGYALVPMIARGIMLGPDQPVILHMLDIEPAAEALNGVKMELIDAA--F-PLLKGVVATTDVVEACK- 80 (332)
Q Consensus 5 ~~kI~VtGaaG~IGs~l~~~L~~~~~~~~~~~~~i~l~D~~~~~~~~~~~~~dl~~~~--~-~~~~~v~~~~~~~~a~~- 80 (332)
.++|+||||+|+||++++..|++.|........+|++.+++. +.+.....++.... . ....|++...++.++++
T Consensus 2 ~k~vlITGasggiG~~la~~l~~~G~~~~~~~~~V~~~~r~~--~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~ 79 (244)
T 2bd0_A 2 KHILLITGAGKGIGRAIALEFARAARHHPDFEPVLVLSSRTA--ADLEKISLECRAEGALTDTITADISDMADVRRLTTH 79 (244)
T ss_dssp CEEEEEETTTSHHHHHHHHHHHHHTTTCTTCCEEEEEEESCH--HHHHHHHHHHHTTTCEEEEEECCTTSHHHHHHHHHH
T ss_pred CCEEEEECCCChHHHHHHHHHHHhcCcccccceEEEEEeCCH--HHHHHHHHHHHccCCeeeEEEecCCCHHHHHHHHHH
Confidence 367999999999999999999987641100112688888753 23332222332110 0 11123333333333333
Q ss_pred ------CCcEEEEecCCCCCC---CCCh---hHHHhhhHHHHHHHHHHHHhhc--CCCcEEEEEeCChhhHHHHHHHHCC
Q 019990 81 ------DVNIAVMVGGFPRKE---GMER---KDVMSKNVSIYKAQASALEKHA--APNCKVLVVANPANTNALILKEFAP 146 (332)
Q Consensus 81 ------~aDiVi~~ag~~~~~---~~~~---~~~~~~N~~~~~~i~~~i~~~~--~~~~~viv~snp~~~~~~~~~~~~~ 146 (332)
+.|+|||.||..... ..+. ...+..|+.....+.+.+..+- ....++|++|+.... .
T Consensus 80 ~~~~~g~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~iv~isS~~~~---------~ 150 (244)
T 2bd0_A 80 IVERYGHIDCLVNNAGVGRFGALSDLTEEDFDYTMNTNLKGTFFLTQALFALMERQHSGHIFFITSVAAT---------K 150 (244)
T ss_dssp HHHHTSCCSEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCGGGT---------S
T ss_pred HHHhCCCCCEEEEcCCcCCcCccccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhCCCCEEEEEecchhc---------C
Confidence 799999999975321 1122 2356678777766666653321 024577777764321 2
Q ss_pred CCCCCcEEEeecccHHHHHHHHHHHcCCCCCCeee
Q 019990 147 SIPAKNITCLTRLDHNRAMGQISERLKVHVSDVKN 181 (332)
Q Consensus 147 ~~~~~~i~~~t~l~~~r~~~~~a~~~~v~~~~v~~ 181 (332)
+.++...|+.+|.....+...++..+. +..++.
T Consensus 151 ~~~~~~~Y~~sK~a~~~~~~~la~e~~--~~gi~v 183 (244)
T 2bd0_A 151 AFRHSSIYCMSKFGQRGLVETMRLYAR--KCNVRI 183 (244)
T ss_dssp CCTTCHHHHHHHHHHHHHHHHHHHHHT--TTTEEE
T ss_pred CCCCCchhHHHHHHHHHHHHHHHHHhh--ccCcEE
Confidence 234444678888877788777777654 334553
|
| >1x1t_A D(-)-3-hydroxybutyrate dehydrogenase; NAD, NADH, SDR, short chain dehydrogenase, ketone BODY, beta hydroxybutyrate, oxidoreductase; HET: NAD; 1.52A {Pseudomonas fragi} SCOP: c.2.1.2 PDB: 1wmb_A* 2ztl_A* 2ztv_A* 2ztm_A* 2ztu_A* 2yz7_A 2zea_A* 3eew_A* 3vdq_A* 3vdr_A* | Back alignment and structure |
|---|
Probab=98.70 E-value=1.8e-08 Score=89.20 Aligned_cols=156 Identities=13% Similarity=0.090 Sum_probs=94.3
Q ss_pred CCcEEEEEcCCChhHHHHHHHHHhcccCCCCCCeEEEEEecccchhh-hhhhHhhhhhh---cc-CCccceEEeCCHHHH
Q 019990 4 NPLRVLVTGAAGQIGYALVPMIARGIMLGPDQPVILHMLDIEPAAEA-LNGVKMELIDA---AF-PLLKGVVATTDVVEA 78 (332)
Q Consensus 4 ~~~kI~VtGaaG~IGs~l~~~L~~~~~~~~~~~~~i~l~D~~~~~~~-~~~~~~dl~~~---~~-~~~~~v~~~~~~~~a 78 (332)
+.++|+||||+|+||++++..|++.|. +|++.|++.. . +.....++... .. ....|++...++.++
T Consensus 3 ~~k~vlVTGas~gIG~~ia~~l~~~G~-------~V~~~~r~~~--~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~ 73 (260)
T 1x1t_A 3 KGKVAVVTGSTSGIGLGIATALAAQGA-------DIVLNGFGDA--AEIEKVRAGLAAQHGVKVLYDGADLSKGEAVRGL 73 (260)
T ss_dssp TTCEEEETTCSSHHHHHHHHHHHHTTC-------EEEEECCSCH--HHHHHHHHHHHHHHTSCEEEECCCTTSHHHHHHH
T ss_pred CCCEEEEeCCCcHHHHHHHHHHHHcCC-------EEEEEeCCcc--hHHHHHHHHHHhccCCcEEEEECCCCCHHHHHHH
Confidence 457899999999999999999999885 8999998642 2 33222233211 11 112344433333333
Q ss_pred h-------CCCcEEEEecCCCCCC---CCCh---hHHHhhhHHHHHHHHHHH----HhhcCCCcEEEEEeCChhhHHHHH
Q 019990 79 C-------KDVNIAVMVGGFPRKE---GMER---KDVMSKNVSIYKAQASAL----EKHAAPNCKVLVVANPANTNALIL 141 (332)
Q Consensus 79 ~-------~~aDiVi~~ag~~~~~---~~~~---~~~~~~N~~~~~~i~~~i----~~~~~~~~~viv~snp~~~~~~~~ 141 (332)
+ ...|++||.||..... ..+. ...+..|+.....+.+++ ++.. ..++|++|+....
T Consensus 74 ~~~~~~~~g~iD~lv~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~--~g~iv~isS~~~~----- 146 (260)
T 1x1t_A 74 VDNAVRQMGRIDILVNNAGIQHTALIEDFPTEKWDAILALNLSAVFHGTAAALPHMKKQG--FGRIINIASAHGL----- 146 (260)
T ss_dssp HHHHHHHHSCCSEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHT--CEEEEEECCGGGT-----
T ss_pred HHHHHHhcCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC--CCEEEEECcHHhC-----
Confidence 3 3789999999974321 1122 235667776655555444 3332 3577777764321
Q ss_pred HHHCCCCCCCcEEEeecccHHHHHHHHHHHcCCCCCCeee
Q 019990 142 KEFAPSIPAKNITCLTRLDHNRAMGQISERLKVHVSDVKN 181 (332)
Q Consensus 142 ~~~~~~~~~~~i~~~t~l~~~r~~~~~a~~~~v~~~~v~~ 181 (332)
.+.+....|+.+|.....+.+.++..+. +..|+.
T Consensus 147 ----~~~~~~~~Y~~sK~a~~~~~~~la~e~~--~~gi~v 180 (260)
T 1x1t_A 147 ----VASANKSAYVAAKHGVVGFTKVTALETA--GQGITA 180 (260)
T ss_dssp ----SCCTTCHHHHHHHHHHHHHHHHHHHHHT--TTTEEE
T ss_pred ----cCCCCCchHHHHHHHHHHHHHHHHHHhc--cCCEEE
Confidence 1233344677788888888888888764 345664
|
| >3ctm_A Carbonyl reductase; alcohol dehydrogenase, short-chain dehydrogenases/reductases (SDR), X-RAY crystallography, oxidoreductase; 2.69A {Candida parapsilosis} | Back alignment and structure |
|---|
Probab=98.70 E-value=3.5e-08 Score=88.05 Aligned_cols=153 Identities=10% Similarity=0.045 Sum_probs=92.9
Q ss_pred CCCCcEEEEEcCCChhHHHHHHHHHhcccCCCCCCeEEEEEecccchhhhhhhHhhhhhhc--c-CCccceEEeCCHHHH
Q 019990 2 AKNPLRVLVTGAAGQIGYALVPMIARGIMLGPDQPVILHMLDIEPAAEALNGVKMELIDAA--F-PLLKGVVATTDVVEA 78 (332)
Q Consensus 2 ~~~~~kI~VtGaaG~IGs~l~~~L~~~~~~~~~~~~~i~l~D~~~~~~~~~~~~~dl~~~~--~-~~~~~v~~~~~~~~a 78 (332)
+.+.++|+||||+|+||++++..|++.|. +|+++|++.. ........+.... . ....|++...++.++
T Consensus 31 ~l~~k~vlITGasggIG~~la~~L~~~G~-------~V~~~~r~~~--~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~ 101 (279)
T 3ctm_A 31 SLKGKVASVTGSSGGIGWAVAEAYAQAGA-------DVAIWYNSHP--ADEKAEHLQKTYGVHSKAYKCNISDPKSVEET 101 (279)
T ss_dssp CCTTCEEEETTTTSSHHHHHHHHHHHHTC-------EEEEEESSSC--CHHHHHHHHHHHCSCEEEEECCTTCHHHHHHH
T ss_pred CCCCCEEEEECCCcHHHHHHHHHHHHCCC-------EEEEEeCCHH--HHHHHHHHHHhcCCcceEEEeecCCHHHHHHH
Confidence 34567899999999999999999998875 8999998642 2222211221111 0 112344333333343
Q ss_pred hC-------CCcEEEEecCCCCC--C---CCCh---hHHHhhhHHH----HHHHHHHHHhhcCCCcEEEEEeCChhhHHH
Q 019990 79 CK-------DVNIAVMVGGFPRK--E---GMER---KDVMSKNVSI----YKAQASALEKHAAPNCKVLVVANPANTNAL 139 (332)
Q Consensus 79 ~~-------~aDiVi~~ag~~~~--~---~~~~---~~~~~~N~~~----~~~i~~~i~~~~~~~~~viv~snp~~~~~~ 139 (332)
++ ..|+|||.||.... + ..+. ...++.|+.. ++.+++.+++.. ..++|++|+....
T Consensus 102 ~~~~~~~~g~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~--~~~iv~isS~~~~--- 176 (279)
T 3ctm_A 102 ISQQEKDFGTIDVFVANAGVTWTQGPEIDVDNYDSWNKIISVDLNGVYYCSHNIGKIFKKNG--KGSLIITSSISGK--- 176 (279)
T ss_dssp HHHHHHHHSCCSEEEECGGGSTTC--CCCSSHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHT--CCEEEEECCCTTS---
T ss_pred HHHHHHHhCCCCEEEECCcccccCCcccccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcC--CCeEEEECchHhc---
Confidence 33 48999999986432 1 1121 2355677766 567777777653 3577777764321
Q ss_pred HHHHHCCC--CCCCcEEEeecccHHHHHHHHHHHcCC
Q 019990 140 ILKEFAPS--IPAKNITCLTRLDHNRAMGQISERLKV 174 (332)
Q Consensus 140 ~~~~~~~~--~~~~~i~~~t~l~~~r~~~~~a~~~~v 174 (332)
.+ .++...|+.+|.....+...+++.++-
T Consensus 177 ------~~~~~~~~~~Y~~sK~a~~~~~~~la~e~~~ 207 (279)
T 3ctm_A 177 ------IVNIPQLQAPYNTAKAACTHLAKSLAIEWAP 207 (279)
T ss_dssp ------CC---CCHHHHHHHHHHHHHHHHHHHHHTTT
T ss_pred ------cCCCCCCcccHHHHHHHHHHHHHHHHHHhcc
Confidence 11 222335777888888888888888763
|
| >3ksu_A 3-oxoacyl-acyl carrier protein reductase; structural genomics, PSI-2, dehydrogenase, protein structure initiative; 2.30A {Oenococcus oeni psu-1} | Back alignment and structure |
|---|
Probab=98.70 E-value=1.2e-07 Score=84.02 Aligned_cols=160 Identities=14% Similarity=0.105 Sum_probs=95.9
Q ss_pred CCcEEEEEcCCChhHHHHHHHHHhcccCCCCCCeEEEEEeccc-chhhhhhhHhhhhhhc--c-CCccceEEeCCHHHHh
Q 019990 4 NPLRVLVTGAAGQIGYALVPMIARGIMLGPDQPVILHMLDIEP-AAEALNGVKMELIDAA--F-PLLKGVVATTDVVEAC 79 (332)
Q Consensus 4 ~~~kI~VtGaaG~IGs~l~~~L~~~~~~~~~~~~~i~l~D~~~-~~~~~~~~~~dl~~~~--~-~~~~~v~~~~~~~~a~ 79 (332)
+.++++||||+|.||.+++..|++.|. +|++.++.. +.+.+.....++.... . ....|++...++.+.+
T Consensus 10 ~~k~vlVTGas~GIG~aia~~la~~G~-------~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~d~~~v~~~~ 82 (262)
T 3ksu_A 10 KNKVIVIAGGIKNLGALTAKTFALESV-------NLVLHYHQAKDSDTANKLKDELEDQGAKVALYQSDLSNEEEVAKLF 82 (262)
T ss_dssp TTCEEEEETCSSHHHHHHHHHHTTSSC-------EEEEEESCGGGHHHHHHHHHHHHTTTCEEEEEECCCCSHHHHHHHH
T ss_pred CCCEEEEECCCchHHHHHHHHHHHCCC-------EEEEEecCccCHHHHHHHHHHHHhcCCcEEEEECCCCCHHHHHHHH
Confidence 346899999999999999999999885 788887642 1123333333333211 1 1123554444444433
Q ss_pred C-------CCcEEEEecCCCCCCC---CChh---HHHhhhHHHHHHHHHHHHhhcCCCcEEEEEeCChhhHHHHHHHHCC
Q 019990 80 K-------DVNIAVMVGGFPRKEG---MERK---DVMSKNVSIYKAQASALEKHAAPNCKVLVVANPANTNALILKEFAP 146 (332)
Q Consensus 80 ~-------~aDiVi~~ag~~~~~~---~~~~---~~~~~N~~~~~~i~~~i~~~~~~~~~viv~snp~~~~~~~~~~~~~ 146 (332)
+ ..|++|+.||...... .+.+ ..++.|+.....+.+.+..+-.+.+++|++++......
T Consensus 83 ~~~~~~~g~iD~lvnnAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~m~~~g~iv~isS~~~~~~-------- 154 (262)
T 3ksu_A 83 DFAEKEFGKVDIAINTVGKVLKKPIVETSEAEFDAMDTINNKVAYFFIKQAAKHMNPNGHIITIATSLLAAY-------- 154 (262)
T ss_dssp HHHHHHHCSEEEEEECCCCCCSSCGGGCCHHHHHHHHHHHHHHHHHHHHHHHTTEEEEEEEEEECCCHHHHH--------
T ss_pred HHHHHHcCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHhhcCCCEEEEEechhhccC--------
Confidence 3 6899999999743211 2222 35678888888888877765323457777776432211
Q ss_pred CCCCCcEEEeecccHHHHHHHHHHHcCCCCCCeee
Q 019990 147 SIPAKNITCLTRLDHNRAMGQISERLKVHVSDVKN 181 (332)
Q Consensus 147 ~~~~~~i~~~t~l~~~r~~~~~a~~~~v~~~~v~~ 181 (332)
.+....|+.+|.....+.+.++..++ +..|+.
T Consensus 155 -~~~~~~Y~asKaa~~~l~~~la~e~~--~~gi~v 186 (262)
T 3ksu_A 155 -TGFYSTYAGNKAPVEHYTRAASKELM--KQQISV 186 (262)
T ss_dssp -HCCCCC-----CHHHHHHHHHHHHTT--TTTCEE
T ss_pred -CCCCchhHHHHHHHHHHHHHHHHHHH--HcCcEE
Confidence 12334689999999999999999875 345664
|
| >3k31_A Enoyl-(acyl-carrier-protein) reductase; ssgcid, NIH, niaid, SBRI, UW, decode, eonyl-(acyl-carrier-PR reductase, NAD, oxidoreductase; HET: NAD; 1.80A {Anaplasma phagocytophilum} PDB: 3k2e_A* | Back alignment and structure |
|---|
Probab=98.69 E-value=9.1e-08 Score=86.43 Aligned_cols=157 Identities=10% Similarity=0.106 Sum_probs=98.8
Q ss_pred CCcEEEEEcCCC--hhHHHHHHHHHhcccCCCCCCeEEEEEecccchhhhhhhHhhhhh-hc--cCCccceEEeCCHHHH
Q 019990 4 NPLRVLVTGAAG--QIGYALVPMIARGIMLGPDQPVILHMLDIEPAAEALNGVKMELID-AA--FPLLKGVVATTDVVEA 78 (332)
Q Consensus 4 ~~~kI~VtGaaG--~IGs~l~~~L~~~~~~~~~~~~~i~l~D~~~~~~~~~~~~~dl~~-~~--~~~~~~v~~~~~~~~a 78 (332)
+.++++||||+| +||.+++..|++.|. +|++.|++.. ... ...++.. .. .....|++...++.++
T Consensus 29 ~~k~vlVTGasg~~GIG~~ia~~la~~G~-------~V~~~~r~~~--~~~-~~~~~~~~~~~~~~~~~Dv~d~~~v~~~ 98 (296)
T 3k31_A 29 EGKKGVIIGVANDKSLAWGIAKAVCAQGA-------EVALTYLSET--FKK-RVDPLAESLGVKLTVPCDVSDAESVDNM 98 (296)
T ss_dssp TTCEEEEECCCSTTSHHHHHHHHHHHTTC-------EEEEEESSGG--GHH-HHHHHHHHHTCCEEEECCTTCHHHHHHH
T ss_pred CCCEEEEEeCCCCCCHHHHHHHHHHHCCC-------EEEEEeCChH--HHH-HHHHHHHhcCCeEEEEcCCCCHHHHHHH
Confidence 457899999987 999999999999886 8999998642 111 1111211 10 1112344443333333
Q ss_pred h-------CCCcEEEEecCCCCC-----C--CCCh---hHHHhhhHHHHHHHHHHHHhhcCCCcEEEEEeCChhhHHHHH
Q 019990 79 C-------KDVNIAVMVGGFPRK-----E--GMER---KDVMSKNVSIYKAQASALEKHAAPNCKVLVVANPANTNALIL 141 (332)
Q Consensus 79 ~-------~~aDiVi~~ag~~~~-----~--~~~~---~~~~~~N~~~~~~i~~~i~~~~~~~~~viv~snp~~~~~~~~ 141 (332)
+ -..|++|+.||.... + ..+. ...+..|+.....+.+++..+-...+++|++|+....
T Consensus 99 ~~~~~~~~g~iD~lVnnAG~~~~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~m~~~g~IV~isS~~~~----- 173 (296)
T 3k31_A 99 FKVLAEEWGSLDFVVHAVAFSDKNELKGRYVDTSLGNFLTSMHISCYSFTYIASKAEPLMTNGGSILTLSYYGAE----- 173 (296)
T ss_dssp HHHHHHHHSCCSEEEECCCCCCHHHHTSCGGGCCHHHHHHHHHHHTHHHHHHHHHHGGGCTTCEEEEEEECGGGT-----
T ss_pred HHHHHHHcCCCCEEEECCCcCCcccccCChhhCCHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCEEEEEEehhhc-----
Confidence 3 368999999997531 1 1222 2356778888888888887764334677777764321
Q ss_pred HHHCCCCCCCcEEEeecccHHHHHHHHHHHcCCCCCCeee
Q 019990 142 KEFAPSIPAKNITCLTRLDHNRAMGQISERLKVHVSDVKN 181 (332)
Q Consensus 142 ~~~~~~~~~~~i~~~t~l~~~r~~~~~a~~~~v~~~~v~~ 181 (332)
.+.+....|+.+|.....+.+.++..++ +..|+.
T Consensus 174 ----~~~~~~~~Y~asKaal~~l~~~la~e~~--~~gIrv 207 (296)
T 3k31_A 174 ----KVVPHYNVMGVCKAALEASVKYLAVDLG--KQQIRV 207 (296)
T ss_dssp ----SCCTTTTHHHHHHHHHHHHHHHHHHHHH--TTTEEE
T ss_pred ----cCCCCchhhHHHHHHHHHHHHHHHHHHh--hcCcEE
Confidence 2234344677888888888888888875 345664
|
| >2jl1_A Triphenylmethane reductase; oxidoreductase, bioremediation; HET: NAP GOL; 1.96A {Citrobacter SP} PDB: 2vrb_A* 2vrc_A 2vrc_D | Back alignment and structure |
|---|
Probab=98.69 E-value=1.8e-08 Score=89.99 Aligned_cols=139 Identities=12% Similarity=0.093 Sum_probs=88.1
Q ss_pred cEEEEEcCCChhHHHHHHHHHhc--ccCCCCCCeEEEEEecccchhhhhhhHhhhhhhcc-CCccceEEeCCHHHHhCCC
Q 019990 6 LRVLVTGAAGQIGYALVPMIARG--IMLGPDQPVILHMLDIEPAAEALNGVKMELIDAAF-PLLKGVVATTDVVEACKDV 82 (332)
Q Consensus 6 ~kI~VtGaaG~IGs~l~~~L~~~--~~~~~~~~~~i~l~D~~~~~~~~~~~~~dl~~~~~-~~~~~v~~~~~~~~a~~~a 82 (332)
|+|+||||+||||++++..|++. +. +|+.++++.. ... ++..... ....|+....++.++++++
T Consensus 1 ~~ilVtGatG~iG~~l~~~L~~~~~g~-------~V~~~~r~~~--~~~----~l~~~~~~~~~~D~~d~~~l~~~~~~~ 67 (287)
T 2jl1_A 1 FSIAVTGATGQLGGLVIQHLLKKVPAS-------QIIAIVRNVE--KAS----TLADQGVEVRHGDYNQPESLQKAFAGV 67 (287)
T ss_dssp CCEEETTTTSHHHHHHHHHHTTTSCGG-------GEEEEESCTT--TTH----HHHHTTCEEEECCTTCHHHHHHHTTTC
T ss_pred CeEEEEcCCchHHHHHHHHHHHhCCCC-------eEEEEEcCHH--HHh----HHhhcCCeEEEeccCCHHHHHHHHhcC
Confidence 47999999999999999999887 65 7888887542 221 1111111 1123444445677788999
Q ss_pred cEEEEecCCCCCCCCChhHHHhhhHHHHHHHHHHHHhhcCCCcEEEEEeCChhhHHHHHHHHCCCCCCCcEEEeecccHH
Q 019990 83 NIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEKHAAPNCKVLVVANPANTNALILKEFAPSIPAKNITCLTRLDHN 162 (332)
Q Consensus 83 DiVi~~ag~~~~~~~~~~~~~~~N~~~~~~i~~~i~~~~~~~~~viv~snp~~~~~~~~~~~~~~~~~~~i~~~t~l~~~ 162 (332)
|+|||+|+.. . .. ..|+....++++++++.+ . .++|++|+... + . .. ..|+.++...+
T Consensus 68 d~vi~~a~~~--~--~~----~~n~~~~~~l~~a~~~~~-~-~~~v~~Ss~~~---~---~--~~----~~y~~~K~~~E 125 (287)
T 2jl1_A 68 SKLLFISGPH--Y--DN----TLLIVQHANVVKAARDAG-V-KHIAYTGYAFA---E---E--SI----IPLAHVHLATE 125 (287)
T ss_dssp SEEEECCCCC--S--CH----HHHHHHHHHHHHHHHHTT-C-SEEEEEEETTG---G---G--CC----STHHHHHHHHH
T ss_pred CEEEEcCCCC--c--Cc----hHHHHHHHHHHHHHHHcC-C-CEEEEECCCCC---C---C--CC----CchHHHHHHHH
Confidence 9999999853 1 11 458888999999998864 2 26666665321 1 0 11 12344555544
Q ss_pred HHHHHHHHHcCCCCCCeeeeE
Q 019990 163 RAMGQISERLKVHVSDVKNVI 183 (332)
Q Consensus 163 r~~~~~a~~~~v~~~~v~~~~ 183 (332)
++. +..|++...+|...
T Consensus 126 ~~~----~~~~~~~~ilrp~~ 142 (287)
T 2jl1_A 126 YAI----RTTNIPYTFLRNAL 142 (287)
T ss_dssp HHH----HHTTCCEEEEEECC
T ss_pred HHH----HHcCCCeEEEECCE
Confidence 433 34688877777644
|
| >2pd4_A Enoyl-[acyl-carrier-protein] reductase [NADH]; antibacterial target, type II fatty acid biosynthesis, enoyl-ACP-reductase, FABI; HET: NAD DCN; 2.30A {Helicobacter pylori} SCOP: c.2.1.2 PDB: 2pd3_A* | Back alignment and structure |
|---|
Probab=98.69 E-value=1.4e-08 Score=90.65 Aligned_cols=159 Identities=14% Similarity=0.128 Sum_probs=97.1
Q ss_pred CC-CCCcEEEEEcCC--ChhHHHHHHHHHhcccCCCCCCeEEEEEecccchhhhhhhHhhhhhh--cc-CCccceEEeCC
Q 019990 1 MA-KNPLRVLVTGAA--GQIGYALVPMIARGIMLGPDQPVILHMLDIEPAAEALNGVKMELIDA--AF-PLLKGVVATTD 74 (332)
Q Consensus 1 m~-~~~~kI~VtGaa--G~IGs~l~~~L~~~~~~~~~~~~~i~l~D~~~~~~~~~~~~~dl~~~--~~-~~~~~v~~~~~ 74 (332)
|. .+.++|+||||+ |+||++++..|++.|. +|+++|++.. ......++... .. ....|++...+
T Consensus 1 M~~l~~k~vlVTGas~~~gIG~~~a~~l~~~G~-------~V~~~~r~~~---~~~~~~~l~~~~~~~~~~~~D~~~~~~ 70 (275)
T 2pd4_A 1 MGFLKGKKGLIVGVANNKSIAYGIAQSCFNQGA-------TLAFTYLNES---LEKRVRPIAQELNSPYVYELDVSKEEH 70 (275)
T ss_dssp -CTTTTCEEEEECCCSTTSHHHHHHHHHHTTTC-------EEEEEESSTT---THHHHHHHHHHTTCCCEEECCTTCHHH
T ss_pred CCCCCCCEEEEECCCCCCcHHHHHHHHHHHCCC-------EEEEEeCCHH---HHHHHHHHHHhcCCcEEEEcCCCCHHH
Confidence 54 345789999998 9999999999999885 8999998642 11122222211 01 11234433333
Q ss_pred HHHHhC-------CCcEEEEecCCCCC-----C--CCCh---hHHHhhhHHHHHHHHHHHHhhcCCCcEEEEEeCChhhH
Q 019990 75 VVEACK-------DVNIAVMVGGFPRK-----E--GMER---KDVMSKNVSIYKAQASALEKHAAPNCKVLVVANPANTN 137 (332)
Q Consensus 75 ~~~a~~-------~aDiVi~~ag~~~~-----~--~~~~---~~~~~~N~~~~~~i~~~i~~~~~~~~~viv~snp~~~~ 137 (332)
+.++++ ..|++||.||.... + ..+. ...+..|+.....+.+.+..+-.+.+++|++|+....
T Consensus 71 v~~~~~~~~~~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~g~iv~isS~~~~- 149 (275)
T 2pd4_A 71 FKSLYNSVKKDLGSLDFIVHSVAFAPKEALEGSLLETSKSAFNTAMEISVYSLIELTNTLKPLLNNGASVLTLSYLGST- 149 (275)
T ss_dssp HHHHHHHHHHHTSCEEEEEECCCCCCGGGGSSCGGGCCHHHHHHHHHHHTHHHHHHHHHHGGGEEEEEEEEEEECGGGT-
T ss_pred HHHHHHHHHHHcCCCCEEEECCccCccccCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHhccCCEEEEEecchhc-
Confidence 333332 67999999997531 1 1222 2356788888888888887653123577777763221
Q ss_pred HHHHHHHCCCCCCCcEEEeecccHHHHHHHHHHHcCCCCCCee
Q 019990 138 ALILKEFAPSIPAKNITCLTRLDHNRAMGQISERLKVHVSDVK 180 (332)
Q Consensus 138 ~~~~~~~~~~~~~~~i~~~t~l~~~r~~~~~a~~~~v~~~~v~ 180 (332)
.+.+....|+.+|.....+.+.+++.+. +..|+
T Consensus 150 --------~~~~~~~~Y~asK~a~~~~~~~la~e~~--~~gi~ 182 (275)
T 2pd4_A 150 --------KYMAHYNVMGLAKAALESAVRYLAVDLG--KHHIR 182 (275)
T ss_dssp --------SBCTTCHHHHHHHHHHHHHHHHHHHHHH--TTTCE
T ss_pred --------CCCCCchhhHHHHHHHHHHHHHHHHHhh--hcCeE
Confidence 1233334577788888888888888763 23455
|
| >3tjr_A Short chain dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, SCD, NAD; HET: UNL; 1.60A {Mycobacterium avium subsp} | Back alignment and structure |
|---|
Probab=98.69 E-value=4.6e-08 Score=88.62 Aligned_cols=157 Identities=16% Similarity=0.130 Sum_probs=96.6
Q ss_pred CcEEEEEcCCChhHHHHHHHHHhcccCCCCCCeEEEEEecccchhhhhhhHhhhhhhcc---CCccceEEeCCHHHHhC-
Q 019990 5 PLRVLVTGAAGQIGYALVPMIARGIMLGPDQPVILHMLDIEPAAEALNGVKMELIDAAF---PLLKGVVATTDVVEACK- 80 (332)
Q Consensus 5 ~~kI~VtGaaG~IGs~l~~~L~~~~~~~~~~~~~i~l~D~~~~~~~~~~~~~dl~~~~~---~~~~~v~~~~~~~~a~~- 80 (332)
.++|+||||+|+||.+++..|++.|. +|++.|++. +.+.....++..... ....|++...++.++++
T Consensus 31 gk~vlVTGas~gIG~~la~~l~~~G~-------~V~~~~r~~--~~~~~~~~~l~~~~~~~~~~~~Dv~d~~~v~~~~~~ 101 (301)
T 3tjr_A 31 GRAAVVTGGASGIGLATATEFARRGA-------RLVLSDVDQ--PALEQAVNGLRGQGFDAHGVVCDVRHLDEMVRLADE 101 (301)
T ss_dssp TCEEEEETTTSHHHHHHHHHHHHTTC-------EEEEEESCH--HHHHHHHHHHHHTTCCEEEEECCTTCHHHHHHHHHH
T ss_pred CCEEEEeCCCCHHHHHHHHHHHHCCC-------EEEEEECCH--HHHHHHHHHHHhcCCceEEEEccCCCHHHHHHHHHH
Confidence 46899999999999999999999885 899999864 334433333432111 11234443333433333
Q ss_pred ------CCcEEEEecCCCCCC---CCCh---hHHHhhhHHHHHHHHHHH----HhhcCCCcEEEEEeCChhhHHHHHHHH
Q 019990 81 ------DVNIAVMVGGFPRKE---GMER---KDVMSKNVSIYKAQASAL----EKHAAPNCKVLVVANPANTNALILKEF 144 (332)
Q Consensus 81 ------~aDiVi~~ag~~~~~---~~~~---~~~~~~N~~~~~~i~~~i----~~~~~~~~~viv~snp~~~~~~~~~~~ 144 (332)
..|++|+.||..... ..+. ...++.|+.....+.+.+ .+.. ..++++++|+....
T Consensus 102 ~~~~~g~id~lvnnAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~~-~~g~iv~isS~~~~-------- 172 (301)
T 3tjr_A 102 AFRLLGGVDVVFSNAGIVVAGPLAQMNHDDWRWVIDIDLWGSIHAVEAFLPRLLEQG-TGGHIAFTASFAGL-------- 172 (301)
T ss_dssp HHHHHSSCSEEEECCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHC-SCEEEEEECCGGGT--------
T ss_pred HHHhCCCCCEEEECCCcCCCCCcccCCHHHHHHHHHhhhHHHHHHHHHHHHHHHhcC-CCcEEEEeCchhhc--------
Confidence 789999999975321 1122 235677877666666654 3332 24577777764321
Q ss_pred CCCCCCCcEEEeecccHHHHHHHHHHHcCCCCCCeeee
Q 019990 145 APSIPAKNITCLTRLDHNRAMGQISERLKVHVSDVKNV 182 (332)
Q Consensus 145 ~~~~~~~~i~~~t~l~~~r~~~~~a~~~~v~~~~v~~~ 182 (332)
.+.+....|+.+|.....+...++..+. +..|+..
T Consensus 173 -~~~~~~~~Y~asKaa~~~~~~~la~e~~--~~gi~v~ 207 (301)
T 3tjr_A 173 -VPNAGLGTYGVAKYGVVGLAETLAREVK--PNGIGVS 207 (301)
T ss_dssp -SCCTTBHHHHHHHHHHHHHHHHHHHHHG--GGTEEEE
T ss_pred -CCCCCchHHHHHHHHHHHHHHHHHHHhc--ccCcEEE
Confidence 1233344677788877788888887764 3456643
|
| >3u5t_A 3-oxoacyl-[acyl-carrier-protein] reductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.40A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=98.69 E-value=8e-08 Score=85.50 Aligned_cols=159 Identities=15% Similarity=0.092 Sum_probs=97.5
Q ss_pred CCcEEEEEcCCChhHHHHHHHHHhcccCCCCCCeEEEEEecccchhhhhhhHhhhhhhcc---CCccceEEeCCHHHHh-
Q 019990 4 NPLRVLVTGAAGQIGYALVPMIARGIMLGPDQPVILHMLDIEPAAEALNGVKMELIDAAF---PLLKGVVATTDVVEAC- 79 (332)
Q Consensus 4 ~~~kI~VtGaaG~IGs~l~~~L~~~~~~~~~~~~~i~l~D~~~~~~~~~~~~~dl~~~~~---~~~~~v~~~~~~~~a~- 79 (332)
+.++++||||+|+||.+++..|++.|. ++++.+.+.. +.++....++..... ....|++...++.+.+
T Consensus 26 ~~k~~lVTGas~GIG~aia~~la~~G~-------~Vv~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~v~~~~~ 97 (267)
T 3u5t_A 26 TNKVAIVTGASRGIGAAIAARLASDGF-------TVVINYAGKA-AAAEEVAGKIEAAGGKALTAQADVSDPAAVRRLFA 97 (267)
T ss_dssp -CCEEEEESCSSHHHHHHHHHHHHHTC-------EEEEEESSCS-HHHHHHHHHHHHTTCCEEEEECCTTCHHHHHHHHH
T ss_pred CCCEEEEeCCCCHHHHHHHHHHHHCCC-------EEEEEcCCCH-HHHHHHHHHHHhcCCeEEEEEcCCCCHHHHHHHHH
Confidence 456799999999999999999999885 7877754322 223322223322110 1123443333333333
Q ss_pred ------CCCcEEEEecCCCCCC---CCCh---hHHHhhhHHHHHHHHHHHHhhcCCCcEEEEEeCChhhHHHHHHHHCCC
Q 019990 80 ------KDVNIAVMVGGFPRKE---GMER---KDVMSKNVSIYKAQASALEKHAAPNCKVLVVANPANTNALILKEFAPS 147 (332)
Q Consensus 80 ------~~aDiVi~~ag~~~~~---~~~~---~~~~~~N~~~~~~i~~~i~~~~~~~~~viv~snp~~~~~~~~~~~~~~ 147 (332)
...|++|+.||..... ..+. ...++.|+.....+.+.+...-.+.+++|++|+.... .+
T Consensus 98 ~~~~~~g~iD~lvnnAG~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~~~~~~~~g~iv~isS~~~~---------~~ 168 (267)
T 3u5t_A 98 TAEEAFGGVDVLVNNAGIMPLTTIAETGDAVFDRVIAVNLKGTFNTLREAAQRLRVGGRIINMSTSQVG---------LL 168 (267)
T ss_dssp HHHHHHSCEEEEEECCCCCCCCCGGGCCHHHHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEECCTHHH---------HC
T ss_pred HHHHHcCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCeEEEEeChhhc---------cC
Confidence 3789999999974321 1222 2356688888888877776653234577777764221 12
Q ss_pred CCCCcEEEeecccHHHHHHHHHHHcCCCCCCeee
Q 019990 148 IPAKNITCLTRLDHNRAMGQISERLKVHVSDVKN 181 (332)
Q Consensus 148 ~~~~~i~~~t~l~~~r~~~~~a~~~~v~~~~v~~ 181 (332)
.+....|+.+|.....+.+.++..++ +..|+.
T Consensus 169 ~~~~~~Y~asKaa~~~l~~~la~e~~--~~gI~v 200 (267)
T 3u5t_A 169 HPSYGIYAAAKAGVEAMTHVLSKELR--GRDITV 200 (267)
T ss_dssp CTTCHHHHHHHHHHHHHHHHHHHHTT--TSCCEE
T ss_pred CCCchHHHHHHHHHHHHHHHHHHHhh--hhCCEE
Confidence 34444678888888888888998875 455664
|
| >1g0o_A Trihydroxynaphthalene reductase; protein-NADPH-active site inhibitor complex, dinucleotide binding fold, oxidoreductase; HET: NDP PYQ; 1.70A {Magnaporthe grisea} SCOP: c.2.1.2 PDB: 1doh_A* 1g0n_A* 1ybv_A* | Back alignment and structure |
|---|
Probab=98.69 E-value=2.1e-08 Score=89.98 Aligned_cols=158 Identities=13% Similarity=0.066 Sum_probs=96.0
Q ss_pred CCcEEEEEcCCChhHHHHHHHHHhcccCCCCCCeEEEEEecccchhhhhhhHhhhhhhc--c-CCccceEEeCCHHHH--
Q 019990 4 NPLRVLVTGAAGQIGYALVPMIARGIMLGPDQPVILHMLDIEPAAEALNGVKMELIDAA--F-PLLKGVVATTDVVEA-- 78 (332)
Q Consensus 4 ~~~kI~VtGaaG~IGs~l~~~L~~~~~~~~~~~~~i~l~D~~~~~~~~~~~~~dl~~~~--~-~~~~~v~~~~~~~~a-- 78 (332)
+.++++||||+|+||.+++..|++.|. +|++.+++.. +.+.....++.... . ....|++...++.++
T Consensus 28 ~~k~vlVTGas~gIG~~ia~~l~~~G~-------~V~~~~r~~~-~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~ 99 (283)
T 1g0o_A 28 EGKVALVTGAGRGIGREMAMELGRRGC-------KVIVNYANST-ESAEEVVAAIKKNGSDAACVKANVGVVEDIVRMFE 99 (283)
T ss_dssp TTCEEEETTTTSHHHHHHHHHHHHTTC-------EEEEEESSCH-HHHHHHHHHHHHTTCCEEEEECCTTCHHHHHHHHH
T ss_pred CCCEEEEeCCCcHHHHHHHHHHHHCCC-------EEEEEeCCch-HHHHHHHHHHHHhCCCeEEEEcCCCCHHHHHHHHH
Confidence 457899999999999999999999885 8889887642 11222222222211 0 111233332223222
Q ss_pred -----hCCCcEEEEecCCCCCC---CCCh---hHHHhhhHHHHHHHHHHHHhhcCCCcEEEEEeCChhhHHHHHHHHCCC
Q 019990 79 -----CKDVNIAVMVGGFPRKE---GMER---KDVMSKNVSIYKAQASALEKHAAPNCKVLVVANPANTNALILKEFAPS 147 (332)
Q Consensus 79 -----~~~aDiVi~~ag~~~~~---~~~~---~~~~~~N~~~~~~i~~~i~~~~~~~~~viv~snp~~~~~~~~~~~~~~ 147 (332)
+...|++||.||..... ..+. ...++.|+.....+.+++..+-....++|++|+.... .+
T Consensus 100 ~~~~~~g~iD~lv~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~g~iv~isS~~~~---------~~ 170 (283)
T 1g0o_A 100 EAVKIFGKLDIVCSNSGVVSFGHVKDVTPEEFDRVFTINTRGQFFVAREAYKHLEIGGRLILMGSITGQ---------AK 170 (283)
T ss_dssp HHHHHHSCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHSCTTCEEEEECCGGGT---------CS
T ss_pred HHHHHcCCCCEEEECCCcCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHhcCCeEEEEechhhc---------cC
Confidence 34789999999975321 1122 2357789888888888887762234577777763221 12
Q ss_pred CCC-CcEEEeecccHHHHHHHHHHHcCCCCCCee
Q 019990 148 IPA-KNITCLTRLDHNRAMGQISERLKVHVSDVK 180 (332)
Q Consensus 148 ~~~-~~i~~~t~l~~~r~~~~~a~~~~v~~~~v~ 180 (332)
.++ ...|+.+|.....+.+.++..+. +..|+
T Consensus 171 ~~~~~~~Y~asK~a~~~~~~~la~e~~--~~gi~ 202 (283)
T 1g0o_A 171 AVPKHAVYSGSKGAIETFARCMAIDMA--DKKIT 202 (283)
T ss_dssp SCSSCHHHHHHHHHHHHHHHHHHHHHG--GGTCE
T ss_pred CCCCCcchHHHHHHHHHHHHHHHHHhc--ccCeE
Confidence 222 33677788878888888887753 33455
|
| >4egf_A L-xylulose reductase; structural genomics, ssgcid, seattle structural genomics CEN infectious disease, oxidoreductase; 2.30A {Mycobacterium smegmatis} | Back alignment and structure |
|---|
Probab=98.68 E-value=6e-08 Score=86.16 Aligned_cols=157 Identities=16% Similarity=0.204 Sum_probs=96.8
Q ss_pred CCcEEEEEcCCChhHHHHHHHHHhcccCCCCCCeEEEEEecccchhhhhhhHhhhhh-hc--c-CCccceEEeCCHHHHh
Q 019990 4 NPLRVLVTGAAGQIGYALVPMIARGIMLGPDQPVILHMLDIEPAAEALNGVKMELID-AA--F-PLLKGVVATTDVVEAC 79 (332)
Q Consensus 4 ~~~kI~VtGaaG~IGs~l~~~L~~~~~~~~~~~~~i~l~D~~~~~~~~~~~~~dl~~-~~--~-~~~~~v~~~~~~~~a~ 79 (332)
+.++|+||||+|+||.+++..|++.|. +|++.|++. +.+.....++.. .. . ....|++...++.+++
T Consensus 19 ~~k~vlVTGas~gIG~aia~~l~~~G~-------~V~~~~r~~--~~~~~~~~~l~~~~~~~~~~~~~Dv~~~~~v~~~~ 89 (266)
T 4egf_A 19 DGKRALITGATKGIGADIARAFAAAGA-------RLVLSGRDV--SELDAARRALGEQFGTDVHTVAIDLAEPDAPAELA 89 (266)
T ss_dssp TTCEEEETTTTSHHHHHHHHHHHHTTC-------EEEEEESCH--HHHHHHHHHHHHHHCCCEEEEECCTTSTTHHHHHH
T ss_pred CCCEEEEeCCCcHHHHHHHHHHHHCCC-------EEEEEeCCH--HHHHHHHHHHHHhcCCcEEEEEecCCCHHHHHHHH
Confidence 457899999999999999999999886 899999864 233333333322 11 1 1123444444443333
Q ss_pred -------CCCcEEEEecCCCCCC---CCCh---hHHHhhhHHHHHHHHHHH----HhhcCCCcEEEEEeCChhhHHHHHH
Q 019990 80 -------KDVNIAVMVGGFPRKE---GMER---KDVMSKNVSIYKAQASAL----EKHAAPNCKVLVVANPANTNALILK 142 (332)
Q Consensus 80 -------~~aDiVi~~ag~~~~~---~~~~---~~~~~~N~~~~~~i~~~i----~~~~~~~~~viv~snp~~~~~~~~~ 142 (332)
...|++||.||..... ..+. ...++.|+.....+.+.+ .+.. ..+++|++|+....
T Consensus 90 ~~~~~~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~-~~g~iv~isS~~~~------ 162 (266)
T 4egf_A 90 RRAAEAFGGLDVLVNNAGISHPQPVVDTDPQLFDATIAVNLRAPALLASAVGKAMVAAG-EGGAIITVASAAAL------ 162 (266)
T ss_dssp HHHHHHHTSCSEEEEECCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHT-SCEEEEEECCGGGT------
T ss_pred HHHHHHcCCCCEEEECCCcCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcC-CCeEEEEEcchhhc------
Confidence 3789999999975321 1222 235667776665555544 3332 24577777764321
Q ss_pred HHCCCCCCCcEEEeecccHHHHHHHHHHHcCCCCCCeee
Q 019990 143 EFAPSIPAKNITCLTRLDHNRAMGQISERLKVHVSDVKN 181 (332)
Q Consensus 143 ~~~~~~~~~~i~~~t~l~~~r~~~~~a~~~~v~~~~v~~ 181 (332)
.+.+....|+.+|.....+.+.+++.++ +..|+.
T Consensus 163 ---~~~~~~~~Y~asK~a~~~l~~~la~e~~--~~gI~v 196 (266)
T 4egf_A 163 ---APLPDHYAYCTSKAGLVMATKVLARELG--PHGIRA 196 (266)
T ss_dssp ---SCCTTCHHHHHHHHHHHHHHHHHHHHHG--GGTEEE
T ss_pred ---cCCCCChHHHHHHHHHHHHHHHHHHHHh--hhCeEE
Confidence 2334444678888888888888888864 345664
|
| >1xhl_A Short-chain dehydrogenase/reductase family member putative tropinone reductase-II...; parallel beta-sheet of seven strands in the order 3214567; HET: NDP TNE; 2.40A {Caenorhabditis elegans} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=98.68 E-value=2.2e-08 Score=90.57 Aligned_cols=153 Identities=12% Similarity=0.143 Sum_probs=91.0
Q ss_pred CCCcEEEEEcCCChhHHHHHHHHHhcccCCCCCCeEEEEEecccchhhhhhhHhhhhhh-----cc-CCccceEEeCCHH
Q 019990 3 KNPLRVLVTGAAGQIGYALVPMIARGIMLGPDQPVILHMLDIEPAAEALNGVKMELIDA-----AF-PLLKGVVATTDVV 76 (332)
Q Consensus 3 ~~~~kI~VtGaaG~IGs~l~~~L~~~~~~~~~~~~~i~l~D~~~~~~~~~~~~~dl~~~-----~~-~~~~~v~~~~~~~ 76 (332)
.+.++++||||+|+||++++..|++.|. +|+++|++. +.+.....++... .. ....|++...++.
T Consensus 24 l~~k~vlVTGas~gIG~aia~~L~~~G~-------~V~~~~r~~--~~~~~~~~~l~~~~~~~~~~~~~~~Dv~d~~~v~ 94 (297)
T 1xhl_A 24 FSGKSVIITGSSNGIGRSAAVIFAKEGA-------QVTITGRNE--DRLEETKQQILKAGVPAEKINAVVADVTEASGQD 94 (297)
T ss_dssp CTTCEEEETTCSSHHHHHHHHHHHHTTC-------EEEEEESCH--HHHHHHHHHHHHTTCCGGGEEEEECCTTSHHHHH
T ss_pred CCCCEEEEeCCCcHHHHHHHHHHHHCCC-------EEEEEeCCH--HHHHHHHHHHHhcCCCCceEEEEecCCCCHHHHH
Confidence 3457899999999999999999999885 899999864 2333332333221 00 1123443333333
Q ss_pred HHhC-------CCcEEEEecCCCCCC-----CCCh---hHHHhhhHHHHHHHHHHHHhhcC-CCcEEEEEeCChhhHHHH
Q 019990 77 EACK-------DVNIAVMVGGFPRKE-----GMER---KDVMSKNVSIYKAQASALEKHAA-PNCKVLVVANPANTNALI 140 (332)
Q Consensus 77 ~a~~-------~aDiVi~~ag~~~~~-----~~~~---~~~~~~N~~~~~~i~~~i~~~~~-~~~~viv~snp~~~~~~~ 140 (332)
++++ ..|++|+.||..... ..+. ...+..|+.....+.+++..+-. ...++|++|+....
T Consensus 95 ~~~~~~~~~~g~iD~lvnnAG~~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~~g~IV~isS~~~~---- 170 (297)
T 1xhl_A 95 DIINTTLAKFGKIDILVNNAGANLADGTANTDQPVELYQKTFKLNFQAVIEMTQKTKEHLIKTKGEIVNVSSIVAG---- 170 (297)
T ss_dssp HHHHHHHHHHSCCCEEEECCCCCCCCSCCGGGSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHTTCEEEEECCGGGS----
T ss_pred HHHHHHHHhcCCCCEEEECCCcCcCCCCccccCCHHHHHHHHhHhhHHHHHHHHHHHHHHHhcCCEEEEEcCchhc----
Confidence 3333 789999999974321 1122 23567787777666665554320 12577777753221
Q ss_pred HHHHCCCC-CCCcEEEeecccHHHHHHHHHHHcC
Q 019990 141 LKEFAPSI-PAKNITCLTRLDHNRAMGQISERLK 173 (332)
Q Consensus 141 ~~~~~~~~-~~~~i~~~t~l~~~r~~~~~a~~~~ 173 (332)
.+. +....|+.+|.....+.+.++..+.
T Consensus 171 -----~~~~~~~~~Y~asKaa~~~l~~~la~el~ 199 (297)
T 1xhl_A 171 -----PQAHSGYPYYACAKAALDQYTRCTAIDLI 199 (297)
T ss_dssp -----SSCCTTSHHHHHHHHHHHHHHHHHHHHHG
T ss_pred -----cCCCCCcchHHHHHHHHHHHHHHHHHHhc
Confidence 112 3333577788777777777777653
|
| >1fjh_A 3alpha-hydroxysteroid dehydrogenase/carbonyl reductase; short chain dehydrogenase, SDR, xenobiotic, metyrapone, oligomerisation; 1.68A {Comamonas testosteroni} SCOP: c.2.1.2 PDB: 1fk8_A* | Back alignment and structure |
|---|
Probab=98.68 E-value=3.8e-08 Score=86.68 Aligned_cols=147 Identities=15% Similarity=0.089 Sum_probs=88.7
Q ss_pred CcEEEEEcCCChhHHHHHHHHHhcccCCCCCCeEEEEEecccchhhhhh-hHhhhhhhccCCccceEEeCCHHHHhC---
Q 019990 5 PLRVLVTGAAGQIGYALVPMIARGIMLGPDQPVILHMLDIEPAAEALNG-VKMELIDAAFPLLKGVVATTDVVEACK--- 80 (332)
Q Consensus 5 ~~kI~VtGaaG~IGs~l~~~L~~~~~~~~~~~~~i~l~D~~~~~~~~~~-~~~dl~~~~~~~~~~v~~~~~~~~a~~--- 80 (332)
|++|+||||+|+||++++..|++.|. +|++.|++.. .+.. ...|+. ...++.++++
T Consensus 1 mk~vlVTGas~gIG~~~a~~l~~~G~-------~V~~~~r~~~--~~~~~~~~Dl~-----------~~~~v~~~~~~~~ 60 (257)
T 1fjh_A 1 MSIIVISGCATGIGAATRKVLEAAGH-------QIVGIDIRDA--EVIADLSTAEG-----------RKQAIADVLAKCS 60 (257)
T ss_dssp CCEEEEETTTSHHHHHHHHHHHHTTC-------EEEEEESSSS--SEECCTTSHHH-----------HHHHHHHHHTTCT
T ss_pred CCEEEEeCCCCHHHHHHHHHHHHCCC-------EEEEEeCCch--hhccccccCCC-----------CHHHHHHHHHHhC
Confidence 35799999999999999999999885 8999998642 1111 112322 2233344443
Q ss_pred -CCcEEEEecCCCCCCCCChhHHHhhhHHHHHHHHHHHHhhc--CCCcEEEEEeCChhhH--------HHHHH-------
Q 019990 81 -DVNIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEKHA--APNCKVLVVANPANTN--------ALILK------- 142 (332)
Q Consensus 81 -~aDiVi~~ag~~~~~~~~~~~~~~~N~~~~~~i~~~i~~~~--~~~~~viv~snp~~~~--------~~~~~------- 142 (332)
..|++||.||..... .+....++.|+.....+.+++..+- ....++|++|+..... ...+.
T Consensus 61 ~~id~lv~~Ag~~~~~-~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~g~iv~isS~~~~~~~~~~~~~~~~~~~~~~~~~ 139 (257)
T 1fjh_A 61 KGMDGLVLCAGLGPQT-KVLGNVVSVNYFGATELMDAFLPALKKGHQPAAVVISSVASAHLAFDKNPLALALEAGEEAKA 139 (257)
T ss_dssp TCCSEEEECCCCCTTC-SSHHHHHHHHTHHHHHHHHHHHHHHHTSSSCEEEEECCGGGGSSCGGGCTTHHHHHHTCHHHH
T ss_pred CCCCEEEECCCCCCCc-ccHHHHHHHhhHHHHHHHHHHHHHHhhcCCcEEEEECChhhhccccccchhhhhhcccchhhh
Confidence 459999999975412 2345677888877777766665431 1235778777643220 00000
Q ss_pred ----HHCCCCCCCcEEEeecccHHHHHHHHHHHc
Q 019990 143 ----EFAPSIPAKNITCLTRLDHNRAMGQISERL 172 (332)
Q Consensus 143 ----~~~~~~~~~~i~~~t~l~~~r~~~~~a~~~ 172 (332)
......++...|+.+|.....+...+++.+
T Consensus 140 ~~~~~~~~~~~~~~~Y~~sK~a~~~~~~~la~e~ 173 (257)
T 1fjh_A 140 RAIVEHAGEQGGNLAYAGSKNALTVAVRKRAAAW 173 (257)
T ss_dssp HHHHHTCCTTHHHHHHHHHHHHHHHHHHHTHHHH
T ss_pred hhhhhcccCCCCccHHHHHHHHHHHHHHHHHHHH
Confidence 000011122357778888888877777775
|
| >1yo6_A Putative carbonyl reductase sniffer; tyrosine-dependent oxidoreductase (SDR family), structural genomics, PSI; 2.60A {Caenorhabditis elegans} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=98.68 E-value=1.6e-08 Score=88.38 Aligned_cols=162 Identities=15% Similarity=0.088 Sum_probs=91.0
Q ss_pred CcEEEEEcCCChhHHHHHHHHHhcc--cCCCCCCeEEEEEecccchhhhhhhHhhhhhhcc-CCccceEEeCCHHHHhC-
Q 019990 5 PLRVLVTGAAGQIGYALVPMIARGI--MLGPDQPVILHMLDIEPAAEALNGVKMELIDAAF-PLLKGVVATTDVVEACK- 80 (332)
Q Consensus 5 ~~kI~VtGaaG~IGs~l~~~L~~~~--~~~~~~~~~i~l~D~~~~~~~~~~~~~dl~~~~~-~~~~~v~~~~~~~~a~~- 80 (332)
+++|+||||+|+||++++..|++.+ . +|+++|++.. .+... .++..... ....|++...++.++++
T Consensus 3 ~k~vlItGasggiG~~la~~l~~~g~~~-------~V~~~~r~~~--~~~~l-~~~~~~~~~~~~~D~~~~~~~~~~~~~ 72 (250)
T 1yo6_A 3 PGSVVVTGANRGIGLGLVQQLVKDKNIR-------HIIATARDVE--KATEL-KSIKDSRVHVLPLTVTCDKSLDTFVSK 72 (250)
T ss_dssp CSEEEESSCSSHHHHHHHHHHHTCTTCC-------EEEEEESSGG--GCHHH-HTCCCTTEEEEECCTTCHHHHHHHHHH
T ss_pred CCEEEEecCCchHHHHHHHHHHhcCCCc-------EEEEEecCHH--HHHHH-HhccCCceEEEEeecCCHHHHHHHHHH
Confidence 5689999999999999999999887 5 8999998642 22211 11101000 11133433333444443
Q ss_pred --------CCcEEEEecCCCC--CC--CCCh---hHHHhhhHHHHHHHHHHHHhhc--C------C-----CcEEEEEeC
Q 019990 81 --------DVNIAVMVGGFPR--KE--GMER---KDVMSKNVSIYKAQASALEKHA--A------P-----NCKVLVVAN 132 (332)
Q Consensus 81 --------~aDiVi~~ag~~~--~~--~~~~---~~~~~~N~~~~~~i~~~i~~~~--~------~-----~~~viv~sn 132 (332)
+.|+|||+||... .+ ..+. ...++.|+.....+.+.+..+- . . ..++|++|+
T Consensus 73 ~~~~~g~~~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~iv~isS 152 (250)
T 1yo6_A 73 VGEIVGSDGLSLLINNAGVLLSYGTNTEPNRAVIAEQLDVNTTSVVLLTQKLLPLLKNAASKESGDQLSVSRAAVITISS 152 (250)
T ss_dssp HHHHHGGGCCCEEEECCCCCCCBCTTSCCCHHHHHHHHHHHTHHHHHHHHHTHHHHHHHHHSSCSSCCCTTTCEEEEECC
T ss_pred HHHhcCCCCCcEEEECCcccCCCcccccCCHHHHHHHHHHhhHHHHHHHHHHHHHHhhcccccCCCcccCCCcEEEEecc
Confidence 7999999998753 11 1222 2356677766666555544321 0 1 357777776
Q ss_pred ChhhHHHHHHHHCCCC-CCCcEEEeecccHHHHHHHHHHHcCCCCCCeee
Q 019990 133 PANTNALILKEFAPSI-PAKNITCLTRLDHNRAMGQISERLKVHVSDVKN 181 (332)
Q Consensus 133 p~~~~~~~~~~~~~~~-~~~~i~~~t~l~~~r~~~~~a~~~~v~~~~v~~ 181 (332)
....... .....+ ++...|+.+|.....+...+++.+. +..++.
T Consensus 153 ~~~~~~~---~~~~~~~~~~~~Y~~sK~a~~~~~~~la~e~~--~~gi~v 197 (250)
T 1yo6_A 153 GLGSITD---NTSGSAQFPVLAYRMSKAAINMFGRTLAVDLK--DDNVLV 197 (250)
T ss_dssp GGGCSTT---CCSTTSSSCBHHHHHHHHHHHHHHHHHHHHTG--GGTCEE
T ss_pred CccccCC---cccccccCCccHHHHHHHHHHHHHHHHHHHhc--cCCeEE
Confidence 4321100 000000 2233577888888888888888763 334553
|
| >3rih_A Short chain dehydrogenase or reductase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: PG5; 2.15A {Mycobacterium abscessus} | Back alignment and structure |
|---|
Probab=98.68 E-value=1.6e-08 Score=91.35 Aligned_cols=151 Identities=17% Similarity=0.176 Sum_probs=93.7
Q ss_pred CCcEEEEEcCCChhHHHHHHHHHhcccCCCCCCeEEEEEecccchhhhhhhHhhhhhhc---c-CCccceEEeCCHHHH-
Q 019990 4 NPLRVLVTGAAGQIGYALVPMIARGIMLGPDQPVILHMLDIEPAAEALNGVKMELIDAA---F-PLLKGVVATTDVVEA- 78 (332)
Q Consensus 4 ~~~kI~VtGaaG~IGs~l~~~L~~~~~~~~~~~~~i~l~D~~~~~~~~~~~~~dl~~~~---~-~~~~~v~~~~~~~~a- 78 (332)
+.++|+||||+|+||++++..|++.|. +|++.|++. +.+.....++.... . ....|++...++.++
T Consensus 40 ~~k~vlVTGas~GIG~aia~~la~~G~-------~V~~~~r~~--~~~~~~~~~l~~~~~~~~~~~~~Dv~d~~~v~~~~ 110 (293)
T 3rih_A 40 SARSVLVTGGTKGIGRGIATVFARAGA-------NVAVAARSP--RELSSVTAELGELGAGNVIGVRLDVSDPGSCADAA 110 (293)
T ss_dssp TTCEEEETTTTSHHHHHHHHHHHHTTC-------EEEEEESSG--GGGHHHHHHHTTSSSSCEEEEECCTTCHHHHHHHH
T ss_pred CCCEEEEeCCCcHHHHHHHHHHHHCCC-------EEEEEECCH--HHHHHHHHHHHhhCCCcEEEEEEeCCCHHHHHHHH
Confidence 456899999999999999999999886 899999864 23443333443211 0 112344333333332
Q ss_pred ------hCCCcEEEEecCCCCCC---CCChh---HHHhhhHHHHHHHHHHH----HhhcCCCcEEEEEeCChhhHHHHHH
Q 019990 79 ------CKDVNIAVMVGGFPRKE---GMERK---DVMSKNVSIYKAQASAL----EKHAAPNCKVLVVANPANTNALILK 142 (332)
Q Consensus 79 ------~~~aDiVi~~ag~~~~~---~~~~~---~~~~~N~~~~~~i~~~i----~~~~~~~~~viv~snp~~~~~~~~~ 142 (332)
+...|++|+.||..... ..+.+ ..++.|+.....+.+++ ++.+ ..++|++|+.....
T Consensus 111 ~~~~~~~g~iD~lvnnAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~m~~~~--~g~iV~isS~~~~~----- 183 (293)
T 3rih_A 111 RTVVDAFGALDVVCANAGIFPEARLDTMTPEQLSEVLDVNVKGTVYTVQACLAPLTASG--RGRVILTSSITGPV----- 183 (293)
T ss_dssp HHHHHHHSCCCEEEECCCCCCCCCTTTCCHHHHHHHHHHHTHHHHHHHHHTHHHHHHHS--SCEEEEECCSBTTT-----
T ss_pred HHHHHHcCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcC--CCEEEEEeChhhcc-----
Confidence 34689999999974321 12222 35677877776666655 4443 35777777643210
Q ss_pred HHCCCCCCCcEEEeecccHHHHHHHHHHHcC
Q 019990 143 EFAPSIPAKNITCLTRLDHNRAMGQISERLK 173 (332)
Q Consensus 143 ~~~~~~~~~~i~~~t~l~~~r~~~~~a~~~~ 173 (332)
.+.+....|+.+|.....+.+.+++.++
T Consensus 184 ---~~~~~~~~Y~asKaa~~~l~~~la~e~~ 211 (293)
T 3rih_A 184 ---TGYPGWSHYGASKAAQLGFMRTAAIELA 211 (293)
T ss_dssp ---BBCTTCHHHHHHHHHHHHHHHHHHHHHG
T ss_pred ---CCCCCCHHHHHHHHHHHHHHHHHHHHHh
Confidence 1234444678888888888888888764
|
| >1sny_A Sniffer CG10964-PA; alpha and beta protein, rossmann fold, dinucleotide binding oxidoreductase; HET: NAP; 1.75A {Drosophila melanogaster} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=98.68 E-value=2.8e-08 Score=87.99 Aligned_cols=154 Identities=14% Similarity=0.057 Sum_probs=91.2
Q ss_pred CCcEEEEEcCCChhHHHHHHHHHhcc---cCCCCCCeEEEEEecccchhhhhhhHhhhhhh--cc-CCccceEEeCCHHH
Q 019990 4 NPLRVLVTGAAGQIGYALVPMIARGI---MLGPDQPVILHMLDIEPAAEALNGVKMELIDA--AF-PLLKGVVATTDVVE 77 (332)
Q Consensus 4 ~~~kI~VtGaaG~IGs~l~~~L~~~~---~~~~~~~~~i~l~D~~~~~~~~~~~~~dl~~~--~~-~~~~~v~~~~~~~~ 77 (332)
++++|+||||+|+||++++..|++.+ . +|++++++.. .+. ...++... .. ....|++...++.+
T Consensus 20 ~~k~vlITGasggIG~~la~~L~~~G~~~~-------~V~~~~r~~~--~~~-~~~~l~~~~~~~~~~~~Dl~~~~~v~~ 89 (267)
T 1sny_A 20 HMNSILITGCNRGLGLGLVKALLNLPQPPQ-------HLFTTCRNRE--QAK-ELEDLAKNHSNIHILEIDLRNFDAYDK 89 (267)
T ss_dssp CCSEEEESCCSSHHHHHHHHHHHTSSSCCS-------EEEEEESCTT--SCH-HHHHHHHHCTTEEEEECCTTCGGGHHH
T ss_pred CCCEEEEECCCCcHHHHHHHHHHhcCCCCc-------EEEEEecChh--hhH-HHHHhhccCCceEEEEecCCChHHHHH
Confidence 46789999999999999999999877 4 8999998642 222 11222111 11 11234444444544
Q ss_pred HhC---------CCcEEEEecCCCCCC----CCCh---hHHHhhhHHHHHHHHHHHHhhc---------CC----CcEEE
Q 019990 78 ACK---------DVNIAVMVGGFPRKE----GMER---KDVMSKNVSIYKAQASALEKHA---------AP----NCKVL 128 (332)
Q Consensus 78 a~~---------~aDiVi~~ag~~~~~----~~~~---~~~~~~N~~~~~~i~~~i~~~~---------~~----~~~vi 128 (332)
+++ ..|+|||.||..... ..+. ...+..|+.....+.+.+..+- .. ..++|
T Consensus 90 ~~~~~~~~~g~~~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~iv 169 (267)
T 1sny_A 90 LVADIEGVTKDQGLNVLFNNAGIAPKSARITAVRSQELLDTLQTNTVVPIMLAKACLPLLKKAAKANESQPMGVGRAAII 169 (267)
T ss_dssp HHHHHHHHHGGGCCSEEEECCCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHTTTSCSSTTTCEEE
T ss_pred HHHHHHHhcCCCCccEEEECCCcCCCccccccCCHHHHHHHHhhhchHHHHHHHHHHHHHhhcccccccccccCCCceEE
Confidence 444 799999999975411 1122 2356677777666666554431 00 35677
Q ss_pred EEeCChhhHHHHHHHHCCCCCCCcEEEeecccHHHHHHHHHHHcC
Q 019990 129 VVANPANTNALILKEFAPSIPAKNITCLTRLDHNRAMGQISERLK 173 (332)
Q Consensus 129 v~snp~~~~~~~~~~~~~~~~~~~i~~~t~l~~~r~~~~~a~~~~ 173 (332)
++|+....... ...++...|+.+|.....+...+++.+.
T Consensus 170 ~isS~~~~~~~------~~~~~~~~Y~~sK~a~~~~~~~la~e~~ 208 (267)
T 1sny_A 170 NMSSILGSIQG------NTDGGMYAYRTSKSALNAATKSLSVDLY 208 (267)
T ss_dssp EECCGGGCSTT------CCSCCCHHHHHHHHHHHHHHHHHHHHHG
T ss_pred EEecccccccC------CCCCCchHHHHHHHHHHHHHHHHHHHhh
Confidence 77764321100 0112333577788877888877877753
|
| >1xkq_A Short-chain reductase family member (5D234); parrallel beta-sheet of seven strands in the order 3214567; HET: NDP; 2.10A {Caenorhabditis elegans} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=98.67 E-value=2e-08 Score=89.85 Aligned_cols=152 Identities=11% Similarity=0.150 Sum_probs=90.6
Q ss_pred CCCcEEEEEcCCChhHHHHHHHHHhcccCCCCCCeEEEEEecccchhhhhhhHhhhhhh-----cc-CCccceEEeCCHH
Q 019990 3 KNPLRVLVTGAAGQIGYALVPMIARGIMLGPDQPVILHMLDIEPAAEALNGVKMELIDA-----AF-PLLKGVVATTDVV 76 (332)
Q Consensus 3 ~~~~kI~VtGaaG~IGs~l~~~L~~~~~~~~~~~~~i~l~D~~~~~~~~~~~~~dl~~~-----~~-~~~~~v~~~~~~~ 76 (332)
.+.++++||||+|+||++++..|++.|. +|+++|++. +.+.....++... .. ....|++...++.
T Consensus 4 l~~k~vlVTGas~gIG~~ia~~l~~~G~-------~V~~~~r~~--~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~ 74 (280)
T 1xkq_A 4 FSNKTVIITGSSNGIGRTTAILFAQEGA-------NVTITGRSS--ERLEETRQIILKSGVSEKQVNSVVADVTTEDGQD 74 (280)
T ss_dssp TTTCEEEETTCSSHHHHHHHHHHHHTTC-------EEEEEESCH--HHHHHHHHHHHTTTCCGGGEEEEECCTTSHHHHH
T ss_pred CCCCEEEEECCCChHHHHHHHHHHHCCC-------EEEEEeCCH--HHHHHHHHHHHHcCCCCcceEEEEecCCCHHHHH
Confidence 3557899999999999999999999885 899999864 2333322233211 00 1123443333333
Q ss_pred HHh-------CCCcEEEEecCCCCCC-------CCCh---hHHHhhhHHHHHHHHHHHHhhcC-CCcEEEEEeCChhhHH
Q 019990 77 EAC-------KDVNIAVMVGGFPRKE-------GMER---KDVMSKNVSIYKAQASALEKHAA-PNCKVLVVANPANTNA 138 (332)
Q Consensus 77 ~a~-------~~aDiVi~~ag~~~~~-------~~~~---~~~~~~N~~~~~~i~~~i~~~~~-~~~~viv~snp~~~~~ 138 (332)
+++ ...|++|+.||..... ..+. ...+..|+.....+.+.+..+-. ...++|++|+....
T Consensus 75 ~~~~~~~~~~g~iD~lv~nAg~~~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~g~iv~isS~~~~-- 152 (280)
T 1xkq_A 75 QIINSTLKQFGKIDVLVNNAGAAIPDAFGTTGTDQGIDIYHKTLKLNLQAVIEMTKKVKPHLVASKGEIVNVSSIVAG-- 152 (280)
T ss_dssp HHHHHHHHHHSCCCEEEECCCCCCCCTTCCCGGGSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEECCGGGS--
T ss_pred HHHHHHHHhcCCCCEEEECCCCCCCCCCCcccccCCHHHHHHHHHHhhHHHHHHHHHHHHHhhcCCCcEEEecCcccc--
Confidence 333 2689999999974321 1122 23566787777666666554310 11577777763221
Q ss_pred HHHHHHCCCC-CCCcEEEeecccHHHHHHHHHHHc
Q 019990 139 LILKEFAPSI-PAKNITCLTRLDHNRAMGQISERL 172 (332)
Q Consensus 139 ~~~~~~~~~~-~~~~i~~~t~l~~~r~~~~~a~~~ 172 (332)
.+. +....|+.+|.....+.+.++..+
T Consensus 153 -------~~~~~~~~~Y~asK~a~~~~~~~la~e~ 180 (280)
T 1xkq_A 153 -------PQAQPDFLYYAIAKAALDQYTRSTAIDL 180 (280)
T ss_dssp -------SSCCCSSHHHHHHHHHHHHHHHHHHHHH
T ss_pred -------CCCCCcccHHHHHHHHHHHHHHHHHHHh
Confidence 122 333467778887778877777765
|
| >1h5q_A NADP-dependent mannitol dehydrogenase; oxidoreductase, mannitol metabolism; HET: NAP; 1.50A {Agaricus bisporus} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=98.67 E-value=1.1e-08 Score=90.41 Aligned_cols=159 Identities=12% Similarity=0.028 Sum_probs=88.5
Q ss_pred CCCcEEEEEcCCChhHHHHHHHHHhcccCCCCCCeEEEEEecccchhhhhhhHhhhhhh---cc-CCccceEEeCCHHHH
Q 019990 3 KNPLRVLVTGAAGQIGYALVPMIARGIMLGPDQPVILHMLDIEPAAEALNGVKMELIDA---AF-PLLKGVVATTDVVEA 78 (332)
Q Consensus 3 ~~~~kI~VtGaaG~IGs~l~~~L~~~~~~~~~~~~~i~l~D~~~~~~~~~~~~~dl~~~---~~-~~~~~v~~~~~~~~a 78 (332)
.+.++|+||||+|+||++++..|++.|. +|++++++.. .......++... .. ....|+....++.++
T Consensus 12 ~~~k~vlITGasggiG~~~a~~l~~~G~-------~V~~~~r~~~--~~~~~~~~l~~~~~~~~~~~~~Dl~~~~~~~~~ 82 (265)
T 1h5q_A 12 FVNKTIIVTGGNRGIGLAFTRAVAAAGA-------NVAVIYRSAA--DAVEVTEKVGKEFGVKTKAYQCDVSNTDIVTKT 82 (265)
T ss_dssp CTTEEEEEETTTSHHHHHHHHHHHHTTE-------EEEEEESSCT--THHHHHHHHHHHHTCCEEEEECCTTCHHHHHHH
T ss_pred cCCCEEEEECCCchHHHHHHHHHHHCCC-------eEEEEeCcch--hhHHHHHHHHHhcCCeeEEEEeeCCCHHHHHHH
Confidence 3457899999999999999999999875 8999997532 122112222110 00 111233333333333
Q ss_pred h-------CCCcEEEEecCCCCCC---CCCh---hHHHhhhHHHHHHHHHHHHhhc---CCCcEEEEEeCChhhHHHHHH
Q 019990 79 C-------KDVNIAVMVGGFPRKE---GMER---KDVMSKNVSIYKAQASALEKHA---APNCKVLVVANPANTNALILK 142 (332)
Q Consensus 79 ~-------~~aDiVi~~ag~~~~~---~~~~---~~~~~~N~~~~~~i~~~i~~~~---~~~~~viv~snp~~~~~~~~~ 142 (332)
+ ...|+|||.||..... ..+. ...+..|+.....+.+.+..+. ....++|++|+....... ..
T Consensus 83 ~~~~~~~~~~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~~~~~iv~~sS~~~~~~~-~~ 161 (265)
T 1h5q_A 83 IQQIDADLGPISGLIANAGVSVVKPATELTHEDFAFVYDVNVFGVFNTCRAVAKLWLQKQQKGSIVVTSSMSSQIIN-QS 161 (265)
T ss_dssp HHHHHHHSCSEEEEEECCCCCCCSCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCCEEEEEECCGGGTSCC-EE
T ss_pred HHHHHHhcCCCCEEEECCCcCCCCchhhCCHHHHHHHHhhhhHhHHHHHHHHHHHHHhcCCCceEEEeCCchhhccc-cc
Confidence 3 3489999999874321 1122 2346778777766666654431 123567777753211000 00
Q ss_pred HHCCCCCCCcEEEeecccHHHHHHHHHHHc
Q 019990 143 EFAPSIPAKNITCLTRLDHNRAMGQISERL 172 (332)
Q Consensus 143 ~~~~~~~~~~i~~~t~l~~~r~~~~~a~~~ 172 (332)
.. .+.++...|+.+|.....+...+++.+
T Consensus 162 ~~-~~~~~~~~Y~~sK~a~~~~~~~la~e~ 190 (265)
T 1h5q_A 162 SL-NGSLTQVFYNSSKAACSNLVKGLAAEW 190 (265)
T ss_dssp ET-TEECSCHHHHHHHHHHHHHHHHHHHHH
T ss_pred cc-cccccccccHHHHHHHHHHHHHHHHHH
Confidence 00 001113356777887788888888776
|
| >2a4k_A 3-oxoacyl-[acyl carrier protein] reductase; reductase,hyperthermophIle, structural genomics, PSI, protei structure initiative; 2.30A {Thermus thermophilus} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=98.67 E-value=6.2e-08 Score=86.00 Aligned_cols=157 Identities=17% Similarity=0.120 Sum_probs=93.5
Q ss_pred CCcEEEEEcCCChhHHHHHHHHHhcccCCCCCCeEEEEEecccchhhhhhhHhhhhhhccCCccceEEeCCHHHHh----
Q 019990 4 NPLRVLVTGAAGQIGYALVPMIARGIMLGPDQPVILHMLDIEPAAEALNGVKMELIDAAFPLLKGVVATTDVVEAC---- 79 (332)
Q Consensus 4 ~~~kI~VtGaaG~IGs~l~~~L~~~~~~~~~~~~~i~l~D~~~~~~~~~~~~~dl~~~~~~~~~~v~~~~~~~~a~---- 79 (332)
+.++++||||+|+||.+++..|++.|. +|+++|++. +.+.....++.........|++...++.+++
T Consensus 5 ~~k~vlITGas~gIG~aia~~l~~~G~-------~V~~~~r~~--~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~ 75 (263)
T 2a4k_A 5 SGKTILVTGAASGIGRAALDLFAREGA-------SLVAVDREE--RLLAEAVAALEAEAIAVVADVSDPKAVEAVFAEAL 75 (263)
T ss_dssp TTCEEEEESTTSHHHHHHHHHHHHTTC-------EEEEEESCH--HHHHHHHHTCCSSEEEEECCTTSHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHCCC-------EEEEEeCCH--HHHHHHHHHhcCceEEEEcCCCCHHHHHHHHHHHH
Confidence 457899999999999999999999885 899999863 2233222222100001123333333333333
Q ss_pred ---CCCcEEEEecCCCCCC---CCCh---hHHHhhhHHHHHHHHHHHHhhcCCCcEEEEEeCChhhHHHHHHHHCCCCCC
Q 019990 80 ---KDVNIAVMVGGFPRKE---GMER---KDVMSKNVSIYKAQASALEKHAAPNCKVLVVANPANTNALILKEFAPSIPA 150 (332)
Q Consensus 80 ---~~aDiVi~~ag~~~~~---~~~~---~~~~~~N~~~~~~i~~~i~~~~~~~~~viv~snp~~~~~~~~~~~~~~~~~ 150 (332)
...|++|+.||..... ..+. ...+..|+.....+.+.+..+-....++|++|+.... .. +.
T Consensus 76 ~~~g~iD~lvnnAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~g~iv~isS~~~~-~~---------~~ 145 (263)
T 2a4k_A 76 EEFGRLHGVAHFAGVAHSALSWNLPLEAWEKVLRVNLTGSFLVARKAGEVLEEGGSLVLTGSVAGL-GA---------FG 145 (263)
T ss_dssp HHHSCCCEEEEGGGGTTTTC----CHHHHHHHHHHHHHHHHHHHHHHHHHCCTTCEEEEECCCTTC-CH---------HH
T ss_pred HHcCCCcEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHhcCCEEEEEecchhc-CC---------CC
Confidence 3579999999874321 1222 2356789888888888877653113577777764322 10 01
Q ss_pred CcEEEeecccHHHHHHHHHHHcCCCCCCeee
Q 019990 151 KNITCLTRLDHNRAMGQISERLKVHVSDVKN 181 (332)
Q Consensus 151 ~~i~~~t~l~~~r~~~~~a~~~~v~~~~v~~ 181 (332)
...|+.+|.....+.+.++..+. +..|+.
T Consensus 146 ~~~Y~asK~a~~~~~~~la~e~~--~~gi~v 174 (263)
T 2a4k_A 146 LAHYAAGKLGVVGLARTLALELA--RKGVRV 174 (263)
T ss_dssp HHHHHHCSSHHHHHHHHHHHHHT--TTTCEE
T ss_pred cHHHHHHHHHHHHHHHHHHHHhh--hhCcEE
Confidence 11346667777777777777764 344553
|
| >3asu_A Short-chain dehydrogenase/reductase SDR; SDR family, rossmann-fold, short-chain dehydrogenase/reducta ALLO-threonine dehydrogenase; 1.90A {Escherichia coli} PDB: 3asv_A* | Back alignment and structure |
|---|
Probab=98.67 E-value=5.9e-08 Score=85.33 Aligned_cols=154 Identities=16% Similarity=0.128 Sum_probs=92.9
Q ss_pred cEEEEEcCCChhHHHHHHHHHhcccCCCCCCeEEEEEecccchhhhhhhHhhhhhhccCCccceEEeCCHHHHhC-----
Q 019990 6 LRVLVTGAAGQIGYALVPMIARGIMLGPDQPVILHMLDIEPAAEALNGVKMELIDAAFPLLKGVVATTDVVEACK----- 80 (332)
Q Consensus 6 ~kI~VtGaaG~IGs~l~~~L~~~~~~~~~~~~~i~l~D~~~~~~~~~~~~~dl~~~~~~~~~~v~~~~~~~~a~~----- 80 (332)
++++||||+|+||.+++..|++.|. +|++.|++. +.+.....++.........|++...++.++++
T Consensus 1 k~vlVTGas~gIG~aia~~l~~~G~-------~V~~~~r~~--~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~ 71 (248)
T 3asu_A 1 MIVLVTGATAGFGECITRRFIQQGH-------KVIATGRRQ--ERLQELKDELGDNLYIAQLDVRNRAAIEEMLASLPAE 71 (248)
T ss_dssp CEEEETTTTSTTHHHHHHHHHHTTC-------EEEEEESCH--HHHHHHHHHHCTTEEEEECCTTCHHHHHHHHHTSCTT
T ss_pred CEEEEECCCChHHHHHHHHHHHCCC-------EEEEEeCCH--HHHHHHHHHhcCceEEEEcCCCCHHHHHHHHHHHHHh
Confidence 4799999999999999999999885 899999853 23332222221111111234443334444333
Q ss_pred --CCcEEEEecCCCC--CC--CCCh---hHHHhhhHHHHHHHHHHH----HhhcCCCcEEEEEeCChhhHHHHHHHHCCC
Q 019990 81 --DVNIAVMVGGFPR--KE--GMER---KDVMSKNVSIYKAQASAL----EKHAAPNCKVLVVANPANTNALILKEFAPS 147 (332)
Q Consensus 81 --~aDiVi~~ag~~~--~~--~~~~---~~~~~~N~~~~~~i~~~i----~~~~~~~~~viv~snp~~~~~~~~~~~~~~ 147 (332)
..|++||.||... .+ ..+. ...++.|+.....+.+.+ ++.. ..++|++|+.... .+
T Consensus 72 ~g~iD~lvnnAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~m~~~~--~g~iv~isS~~~~---------~~ 140 (248)
T 3asu_A 72 WCNIDILVNNAGLALGMEPAHKASVEDWETMIDTNNKGLVYMTRAVLPGMVERN--HGHIINIGSTAGS---------WP 140 (248)
T ss_dssp TCCCCEEEECCCCCCCCSCGGGSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHT--CCEEEEECCGGGT---------SC
T ss_pred CCCCCEEEECCCcCCCCCchhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcC--CceEEEEccchhc---------cC
Confidence 6899999999742 11 1222 235677876655555444 3432 3577777764321 22
Q ss_pred CCCCcEEEeecccHHHHHHHHHHHcCCCCCCeee
Q 019990 148 IPAKNITCLTRLDHNRAMGQISERLKVHVSDVKN 181 (332)
Q Consensus 148 ~~~~~i~~~t~l~~~r~~~~~a~~~~v~~~~v~~ 181 (332)
.+....|+.+|.....+...++..+. +..|+.
T Consensus 141 ~~~~~~Y~asKaa~~~~~~~la~e~~--~~gi~v 172 (248)
T 3asu_A 141 YAGGNVYGATKAFVRQFSLNLRTDLH--GTAVRV 172 (248)
T ss_dssp CTTCHHHHHHHHHHHHHHHHHHHHTT--TSCCEE
T ss_pred CCCCchHHHHHHHHHHHHHHHHHHhh--hcCcEE
Confidence 34444678888888888888888764 445664
|
| >4iin_A 3-ketoacyl-acyl carrier protein reductase (FABG); structural genomics, center for structural genomics of infec diseases, csgid; HET: NAD; 2.40A {Helicobacter pylori} PDB: 4ijk_A | Back alignment and structure |
|---|
Probab=98.66 E-value=4.4e-08 Score=87.26 Aligned_cols=160 Identities=17% Similarity=0.138 Sum_probs=94.9
Q ss_pred CCCCCcEEEEEcCCChhHHHHHHHHHhcccCCCCCCeEEEEEecccchhhhhhhHhhhhhhcc---CCccceEEeCCHHH
Q 019990 1 MAKNPLRVLVTGAAGQIGYALVPMIARGIMLGPDQPVILHMLDIEPAAEALNGVKMELIDAAF---PLLKGVVATTDVVE 77 (332)
Q Consensus 1 m~~~~~kI~VtGaaG~IGs~l~~~L~~~~~~~~~~~~~i~l~D~~~~~~~~~~~~~dl~~~~~---~~~~~v~~~~~~~~ 77 (332)
|+.+.++|+||||+|+||++++..|++.|. +|++.+++.. +..+.....+..... ....|+....++.+
T Consensus 25 m~l~~k~vlITGas~gIG~~la~~l~~~G~-------~V~~~~r~~~-~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~ 96 (271)
T 4iin_A 25 MQFTGKNVLITGASKGIGAEIAKTLASMGL-------KVWINYRSNA-EVADALKNELEEKGYKAAVIKFDAASESDFIE 96 (271)
T ss_dssp CCCSCCEEEETTCSSHHHHHHHHHHHHTTC-------EEEEEESSCH-HHHHHHHHHHHHTTCCEEEEECCTTCHHHHHH
T ss_pred cccCCCEEEEECCCcHHHHHHHHHHHHCCC-------EEEEEeCCCH-HHHHHHHHHHHhcCCceEEEECCCCCHHHHHH
Confidence 334567899999999999999999999885 8888887432 222222222222110 11223433333333
Q ss_pred Hh-------CCCcEEEEecCCCCCCC---CCh---hHHHhhhHHHHHHHHHH----HHhhcCCCcEEEEEeCChhhHHHH
Q 019990 78 AC-------KDVNIAVMVGGFPRKEG---MER---KDVMSKNVSIYKAQASA----LEKHAAPNCKVLVVANPANTNALI 140 (332)
Q Consensus 78 a~-------~~aDiVi~~ag~~~~~~---~~~---~~~~~~N~~~~~~i~~~----i~~~~~~~~~viv~snp~~~~~~~ 140 (332)
++ .+.|++|+.||...... .+. ...++.|+.....+.+. +++.. ..++|++|+....
T Consensus 97 ~~~~~~~~~g~id~li~nAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~--~g~iv~isS~~~~---- 170 (271)
T 4iin_A 97 AIQTIVQSDGGLSYLVNNAGVVRDKLAIKMKTEDFHHVIDNNLTSAFIGCREALKVMSKSR--FGSVVNVASIIGE---- 170 (271)
T ss_dssp HHHHHHHHHSSCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHT--CEEEEEECCHHHH----
T ss_pred HHHHHHHhcCCCCEEEECCCcCCCcccccCCHHHHHHHHHhccHHHHHHHHHHHHHHhhcC--CCEEEEEechhhc----
Confidence 33 37899999999753221 122 23556676655444444 44432 3577777753221
Q ss_pred HHHHCCCCCCCcEEEeecccHHHHHHHHHHHcCCCCCCeee
Q 019990 141 LKEFAPSIPAKNITCLTRLDHNRAMGQISERLKVHVSDVKN 181 (332)
Q Consensus 141 ~~~~~~~~~~~~i~~~t~l~~~r~~~~~a~~~~v~~~~v~~ 181 (332)
.+.+....|+.+|.....+.+.+++.+. +..|+.
T Consensus 171 -----~~~~~~~~Y~asK~a~~~~~~~la~e~~--~~gi~v 204 (271)
T 4iin_A 171 -----RGNMGQTNYSASKGGMIAMSKSFAYEGA--LRNIRF 204 (271)
T ss_dssp -----HCCTTCHHHHHHHHHHHHHHHHHHHHHH--TTTEEE
T ss_pred -----CCCCCchHhHHHHHHHHHHHHHHHHHHH--HhCcEE
Confidence 1234445678888888888888888764 335664
|
| >3grk_A Enoyl-(acyl-carrier-protein) reductase (NADH); ssgcid, niaid, structural genomics, seattle structural genomics center for infectious disease; 2.35A {Brucella melitensis} PDB: 4eit_A* | Back alignment and structure |
|---|
Probab=98.66 E-value=9.6e-08 Score=86.17 Aligned_cols=157 Identities=15% Similarity=0.142 Sum_probs=98.0
Q ss_pred CCcEEEEEcCCCh--hHHHHHHHHHhcccCCCCCCeEEEEEecccchhhhhhhHhhhhhh--c-cCCccceEEeCCHHHH
Q 019990 4 NPLRVLVTGAAGQ--IGYALVPMIARGIMLGPDQPVILHMLDIEPAAEALNGVKMELIDA--A-FPLLKGVVATTDVVEA 78 (332)
Q Consensus 4 ~~~kI~VtGaaG~--IGs~l~~~L~~~~~~~~~~~~~i~l~D~~~~~~~~~~~~~dl~~~--~-~~~~~~v~~~~~~~~a 78 (332)
+.++++||||+|+ ||++++..|++.|. +|++.+++.. ......++... . .....|++...++.++
T Consensus 30 ~gk~~lVTGasg~~GIG~aia~~la~~G~-------~V~~~~r~~~---~~~~~~~~~~~~~~~~~~~~Dv~d~~~v~~~ 99 (293)
T 3grk_A 30 QGKRGLILGVANNRSIAWGIAKAAREAGA-------ELAFTYQGDA---LKKRVEPLAEELGAFVAGHCDVADAASIDAV 99 (293)
T ss_dssp TTCEEEEECCCSSSSHHHHHHHHHHHTTC-------EEEEEECSHH---HHHHHHHHHHHHTCEEEEECCTTCHHHHHHH
T ss_pred CCCEEEEEcCCCCCcHHHHHHHHHHHCCC-------EEEEEcCCHH---HHHHHHHHHHhcCCceEEECCCCCHHHHHHH
Confidence 3468999999988 99999999999885 7899987531 11111222111 0 1112344433333333
Q ss_pred h-------CCCcEEEEecCCCC-----CC--CCCh---hHHHhhhHHHHHHHHHHHHhhcCCCcEEEEEeCChhhHHHHH
Q 019990 79 C-------KDVNIAVMVGGFPR-----KE--GMER---KDVMSKNVSIYKAQASALEKHAAPNCKVLVVANPANTNALIL 141 (332)
Q Consensus 79 ~-------~~aDiVi~~ag~~~-----~~--~~~~---~~~~~~N~~~~~~i~~~i~~~~~~~~~viv~snp~~~~~~~~ 141 (332)
+ ...|++|+.||... .+ ..+. ...+..|+.....+.+.+..+-...+++|++|+....
T Consensus 100 ~~~~~~~~g~iD~lVnnAG~~~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~m~~~g~Iv~isS~~~~----- 174 (293)
T 3grk_A 100 FETLEKKWGKLDFLVHAIGFSDKDELTGRYIDTSEANFTNTMLISVYSLTAVSRRAEKLMADGGSILTLTYYGAE----- 174 (293)
T ss_dssp HHHHHHHTSCCSEEEECCCCCCHHHHTSCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHTTTCEEEEEEECGGGT-----
T ss_pred HHHHHHhcCCCCEEEECCccCCcccccccccccCHHHHHHHHHHHHHHHHHHHHHHHHhccCCCEEEEEeehhhc-----
Confidence 3 37899999999753 11 1222 2356778888888888777654335677877764321
Q ss_pred HHHCCCCCCCcEEEeecccHHHHHHHHHHHcCCCCCCeee
Q 019990 142 KEFAPSIPAKNITCLTRLDHNRAMGQISERLKVHVSDVKN 181 (332)
Q Consensus 142 ~~~~~~~~~~~i~~~t~l~~~r~~~~~a~~~~v~~~~v~~ 181 (332)
.+.+....|+.+|.....+.+.+++.++ +..|+.
T Consensus 175 ----~~~~~~~~Y~asKaa~~~l~~~la~e~~--~~gI~v 208 (293)
T 3grk_A 175 ----KVMPNYNVMGVAKAALEASVKYLAVDLG--PQNIRV 208 (293)
T ss_dssp ----SBCTTTTHHHHHHHHHHHHHHHHHHHHG--GGTEEE
T ss_pred ----cCCCchHHHHHHHHHHHHHHHHHHHHHh--HhCCEE
Confidence 1233344678888888888888888875 345664
|
| >1qyd_A Pinoresinol-lariciresinol reductase; NADPH-dependent aromatic alcohol reductases, pcber, PLR, IFR, lignans, isoflavonoids, plant protein; 2.50A {Thuja plicata} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=98.66 E-value=4.4e-08 Score=88.62 Aligned_cols=156 Identities=13% Similarity=0.091 Sum_probs=88.5
Q ss_pred CCCCCcEEEEEcCCChhHHHHHHHHHhcccCCCCCCeEEEEEecccch---hhhhhhHhhhhhhcc-CCccceEEeCCHH
Q 019990 1 MAKNPLRVLVTGAAGQIGYALVPMIARGIMLGPDQPVILHMLDIEPAA---EALNGVKMELIDAAF-PLLKGVVATTDVV 76 (332)
Q Consensus 1 m~~~~~kI~VtGaaG~IGs~l~~~L~~~~~~~~~~~~~i~l~D~~~~~---~~~~~~~~dl~~~~~-~~~~~v~~~~~~~ 76 (332)
|+ ++++|+||||+|++|++++..|++.+. +|++++++... ++.. ....+..... ....|+....++.
T Consensus 1 M~-~~~~ilVtGatG~iG~~l~~~L~~~g~-------~V~~~~R~~~~~~~~~~~-~~~~~~~~~~~~~~~D~~d~~~l~ 71 (313)
T 1qyd_A 1 MD-KKSRVLIVGGTGYIGKRIVNASISLGH-------PTYVLFRPEVVSNIDKVQ-MLLYFKQLGAKLIEASLDDHQRLV 71 (313)
T ss_dssp -C-CCCCEEEESTTSTTHHHHHHHHHHTTC-------CEEEECCSCCSSCHHHHH-HHHHHHTTTCEEECCCSSCHHHHH
T ss_pred CC-CCCEEEEEcCCcHHHHHHHHHHHhCCC-------cEEEEECCCcccchhHHH-HHHHHHhCCeEEEeCCCCCHHHHH
Confidence 53 367899999999999999999998875 78888876321 1111 1111211111 1224555555677
Q ss_pred HHhCCCcEEEEecCCCCCCCCChhHHHhhhHHHHHHHHHHHHhhcCCCcEEEEEeCCh-hhHHHHHHHHCCCCCC-CcEE
Q 019990 77 EACKDVNIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEKHAAPNCKVLVVANPA-NTNALILKEFAPSIPA-KNIT 154 (332)
Q Consensus 77 ~a~~~aDiVi~~ag~~~~~~~~~~~~~~~N~~~~~~i~~~i~~~~~~~~~viv~snp~-~~~~~~~~~~~~~~~~-~~i~ 154 (332)
++++++|+|||+++..... .|+...+++++++++.+.. .++| .|.-. +. ........+ ...|
T Consensus 72 ~~~~~~d~vi~~a~~~~~~---------~~~~~~~~l~~aa~~~g~v-~~~v-~S~~g~~~-----~~~~~~~~p~~~~y 135 (313)
T 1qyd_A 72 DALKQVDVVISALAGGVLS---------HHILEQLKLVEAIKEAGNI-KRFL-PSEFGMDP-----DIMEHALQPGSITF 135 (313)
T ss_dssp HHHTTCSEEEECCCCSSSS---------TTTTTHHHHHHHHHHSCCC-SEEE-CSCCSSCT-----TSCCCCCSSTTHHH
T ss_pred HHHhCCCEEEECCccccch---------hhHHHHHHHHHHHHhcCCC-ceEE-ecCCcCCc-----cccccCCCCCcchH
Confidence 8899999999999864211 1455567888888876411 2444 33211 10 000011112 1233
Q ss_pred EeecccHHHHHHHHHHHcCCCCCCeeeeEEEe
Q 019990 155 CLTRLDHNRAMGQISERLKVHVSDVKNVIIWG 186 (332)
Q Consensus 155 ~~t~l~~~r~~~~~a~~~~v~~~~v~~~~V~G 186 (332)
.++...++ +.+..|++...+|.-.++|
T Consensus 136 -~sK~~~e~----~~~~~g~~~~ilrp~~~~~ 162 (313)
T 1qyd_A 136 -IDKRKVRR----AIEAASIPYTYVSSNMFAG 162 (313)
T ss_dssp -HHHHHHHH----HHHHTTCCBCEEECCEEHH
T ss_pred -HHHHHHHH----HHHhcCCCeEEEEeceecc
Confidence 44444333 3356789988888765434
|
| >2gdz_A NAD+-dependent 15-hydroxyprostaglandin dehydrogen; dehydrogenase, structural genomics, SH dehydrogenase/reductase, inflammation; HET: NAD; 1.65A {Homo sapiens} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=98.65 E-value=7e-08 Score=85.65 Aligned_cols=155 Identities=16% Similarity=0.119 Sum_probs=88.4
Q ss_pred CcEEEEEcCCChhHHHHHHHHHhcccCCCCCCeEEEEEecccchhhhhhhHhhhhhh----cc-CCccceEEeCCHHHHh
Q 019990 5 PLRVLVTGAAGQIGYALVPMIARGIMLGPDQPVILHMLDIEPAAEALNGVKMELIDA----AF-PLLKGVVATTDVVEAC 79 (332)
Q Consensus 5 ~~kI~VtGaaG~IGs~l~~~L~~~~~~~~~~~~~i~l~D~~~~~~~~~~~~~dl~~~----~~-~~~~~v~~~~~~~~a~ 79 (332)
.++|+||||+|+||++++..|++.|. +|+++|++. +.+.....++... .. ....|++...++.+++
T Consensus 7 ~k~vlVTGas~gIG~~ia~~l~~~G~-------~V~~~~r~~--~~~~~~~~~l~~~~~~~~~~~~~~D~~~~~~v~~~~ 77 (267)
T 2gdz_A 7 GKVALVTGAAQGIGRAFAEALLLKGA-------KVALVDWNL--EAGVQCKAALHEQFEPQKTLFIQCDVADQQQLRDTF 77 (267)
T ss_dssp TCEEEEETTTSHHHHHHHHHHHHTTC-------EEEEEESCH--HHHHHHHHHHTTTSCGGGEEEEECCTTSHHHHHHHH
T ss_pred CCEEEEECCCCcHHHHHHHHHHHCCC-------EEEEEECCH--HHHHHHHHHHHhhcCCCceEEEecCCCCHHHHHHHH
Confidence 46899999999999999999999885 899999853 2222222222211 00 1112333333333333
Q ss_pred -------CCCcEEEEecCCCCCCCCChhHHHhhhHH----HHHHHHHHHHhhcC-CCcEEEEEeCChhhHHHHHHHHCCC
Q 019990 80 -------KDVNIAVMVGGFPRKEGMERKDVMSKNVS----IYKAQASALEKHAA-PNCKVLVVANPANTNALILKEFAPS 147 (332)
Q Consensus 80 -------~~aDiVi~~ag~~~~~~~~~~~~~~~N~~----~~~~i~~~i~~~~~-~~~~viv~snp~~~~~~~~~~~~~~ 147 (332)
...|++||.||.... ..-...+..|+. .++.+++.+++... +..++|++|+.... .+
T Consensus 78 ~~~~~~~g~id~lv~~Ag~~~~--~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~g~iv~isS~~~~---------~~ 146 (267)
T 2gdz_A 78 RKVVDHFGRLDILVNNAGVNNE--KNWEKTLQINLVSVISGTYLGLDYMSKQNGGEGGIIINMSSLAGL---------MP 146 (267)
T ss_dssp HHHHHHHSCCCEEEECCCCCCS--SSHHHHHHHHTHHHHHHHHHHHHHHCGGGTCCCEEEEEECCGGGT---------SC
T ss_pred HHHHHHcCCCCEEEECCCCCCh--hhHHHHHhHHHHHHHHHHHHHHHHHHhccCCCCCEEEEeCCcccc---------CC
Confidence 357999999997531 233456677765 44566666655421 13577777764321 12
Q ss_pred CCCCcEEEeecccHHHHHHHH--HHHcCCCCCCeee
Q 019990 148 IPAKNITCLTRLDHNRAMGQI--SERLKVHVSDVKN 181 (332)
Q Consensus 148 ~~~~~i~~~t~l~~~r~~~~~--a~~~~v~~~~v~~ 181 (332)
.+....|+.+|.....+.+.+ +..+ .+..++.
T Consensus 147 ~~~~~~Y~~sK~a~~~~~~~~ala~e~--~~~gi~v 180 (267)
T 2gdz_A 147 VAQQPVYCASKHGIVGFTRSAALAANL--MNSGVRL 180 (267)
T ss_dssp CTTCHHHHHHHHHHHHHHHHHHHHHHH--HTCCEEE
T ss_pred CCCCchHHHHHHHHHHHHHHHHHHHHh--ccCCcEE
Confidence 233335666776666665553 2333 2455664
|
| >3is3_A 17BETA-hydroxysteroid dehydrogenase; short chain dehydrogenase/REDU SDR, fungi, oxidoreductase; HET: GOL; 1.48A {Cochliobolus lunatus} PDB: 3qwf_A* 3qwh_A* 3qwi_A* 3itd_A | Back alignment and structure |
|---|
Probab=98.65 E-value=9.1e-08 Score=85.15 Aligned_cols=159 Identities=14% Similarity=0.108 Sum_probs=100.0
Q ss_pred CcEEEEEcCCChhHHHHHHHHHhcccCCCCCCeEEEEEecccchhhhhhhHhhhhhhcc---CCccceEEeCCHHHHh--
Q 019990 5 PLRVLVTGAAGQIGYALVPMIARGIMLGPDQPVILHMLDIEPAAEALNGVKMELIDAAF---PLLKGVVATTDVVEAC-- 79 (332)
Q Consensus 5 ~~kI~VtGaaG~IGs~l~~~L~~~~~~~~~~~~~i~l~D~~~~~~~~~~~~~dl~~~~~---~~~~~v~~~~~~~~a~-- 79 (332)
.++++||||+|+||.+++..|++.|. +|++.+.+.. +.+.....++..... ....|++...++.+++
T Consensus 18 ~k~~lVTGas~gIG~aia~~l~~~G~-------~V~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~ 89 (270)
T 3is3_A 18 GKVALVTGSGRGIGAAVAVHLGRLGA-------KVVVNYANST-KDAEKVVSEIKALGSDAIAIKADIRQVPEIVKLFDQ 89 (270)
T ss_dssp TCEEEESCTTSHHHHHHHHHHHHTTC-------EEEEEESSCH-HHHHHHHHHHHHTTCCEEEEECCTTSHHHHHHHHHH
T ss_pred CCEEEEECCCchHHHHHHHHHHHCCC-------EEEEEcCCCH-HHHHHHHHHHHhcCCcEEEEEcCCCCHHHHHHHHHH
Confidence 46899999999999999999999886 7888776432 223333333322110 1123444333333333
Q ss_pred -----CCCcEEEEecCCCCCC---CCCh---hHHHhhhHHHHHHHHHHHHhhcCCCcEEEEEeCChhhHHHHHHHHCCCC
Q 019990 80 -----KDVNIAVMVGGFPRKE---GMER---KDVMSKNVSIYKAQASALEKHAAPNCKVLVVANPANTNALILKEFAPSI 148 (332)
Q Consensus 80 -----~~aDiVi~~ag~~~~~---~~~~---~~~~~~N~~~~~~i~~~i~~~~~~~~~viv~snp~~~~~~~~~~~~~~~ 148 (332)
...|++|+.||..... ..+. ...++.|+.....+.+++..+-.+.+++|++|+.... ..+.
T Consensus 90 ~~~~~g~id~lvnnAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~g~iv~isS~~~~--------~~~~ 161 (270)
T 3is3_A 90 AVAHFGHLDIAVSNSGVVSFGHLKDVTEEEFDRVFSLNTRGQFFVAREAYRHLTEGGRIVLTSSNTSK--------DFSV 161 (270)
T ss_dssp HHHHHSCCCEEECCCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHCCTTCEEEEECCTTTT--------TCCC
T ss_pred HHHHcCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHhcCCeEEEEeCchhc--------cCCC
Confidence 3789999999975321 1122 2356788888888888877764345677777764311 0233
Q ss_pred CCCcEEEeecccHHHHHHHHHHHcCCCCCCeee
Q 019990 149 PAKNITCLTRLDHNRAMGQISERLKVHVSDVKN 181 (332)
Q Consensus 149 ~~~~i~~~t~l~~~r~~~~~a~~~~v~~~~v~~ 181 (332)
+....|+.+|.....+.+.++..++ +..|+.
T Consensus 162 ~~~~~Y~asKaa~~~~~~~la~e~~--~~gi~v 192 (270)
T 3is3_A 162 PKHSLYSGSKGAVDSFVRIFSKDCG--DKKITV 192 (270)
T ss_dssp TTCHHHHHHHHHHHHHHHHHHHHHG--GGTCEE
T ss_pred CCCchhHHHHHHHHHHHHHHHHHhc--ccCeEE
Confidence 4444678888888888888888875 344553
|
| >3pgx_A Carveol dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: NAD; 1.85A {Mycobacterium avium} SCOP: c.2.1.0 | Back alignment and structure |
|---|
Probab=98.65 E-value=5.8e-08 Score=86.86 Aligned_cols=159 Identities=14% Similarity=0.100 Sum_probs=94.5
Q ss_pred CCcEEEEEcCCChhHHHHHHHHHhcccCCCCCCeEEEEEeccc-----------chhhhhhhHhhhhhhcc---CCccce
Q 019990 4 NPLRVLVTGAAGQIGYALVPMIARGIMLGPDQPVILHMLDIEP-----------AAEALNGVKMELIDAAF---PLLKGV 69 (332)
Q Consensus 4 ~~~kI~VtGaaG~IGs~l~~~L~~~~~~~~~~~~~i~l~D~~~-----------~~~~~~~~~~dl~~~~~---~~~~~v 69 (332)
+.++++||||+|+||.+++..|++.|. +|+++|++. +.+.+.....++..... ....|+
T Consensus 14 ~gk~~lVTGas~gIG~a~a~~la~~G~-------~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv 86 (280)
T 3pgx_A 14 QGRVAFITGAARGQGRSHAVRLAAEGA-------DIIACDICAPVSASVTYAPASPEDLDETARLVEDQGRKALTRVLDV 86 (280)
T ss_dssp TTCEEEEESTTSHHHHHHHHHHHHTTC-------EEEEEECCSCCCTTCCSCCCCHHHHHHHHHHHHTTTCCEEEEECCT
T ss_pred CCCEEEEECCCcHHHHHHHHHHHHCCC-------EEEEEeccccccccccccccCHHHHHHHHHHHHhcCCeEEEEEcCC
Confidence 356899999999999999999999886 899998731 11223322222222110 111344
Q ss_pred EEeCCHHHHh-------CCCcEEEEecCCCCCC---CCChh---HHHhhhHHHHHHHHHHH----HhhcCCCcEEEEEeC
Q 019990 70 VATTDVVEAC-------KDVNIAVMVGGFPRKE---GMERK---DVMSKNVSIYKAQASAL----EKHAAPNCKVLVVAN 132 (332)
Q Consensus 70 ~~~~~~~~a~-------~~aDiVi~~ag~~~~~---~~~~~---~~~~~N~~~~~~i~~~i----~~~~~~~~~viv~sn 132 (332)
+...++.+.+ ...|++|+.||..... ..+.+ ..++.|+.....+.+.+ .+.. ..+++|++|+
T Consensus 87 ~~~~~v~~~~~~~~~~~g~id~lvnnAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~-~~g~iv~isS 165 (280)
T 3pgx_A 87 RDDAALRELVADGMEQFGRLDVVVANAGVLSWGRVWELTDEQWDTVIGVNLTGTWRTLRATVPAMIEAG-NGGSIVVVSS 165 (280)
T ss_dssp TCHHHHHHHHHHHHHHHCCCCEEEECCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHC-SCEEEEEECC
T ss_pred CCHHHHHHHHHHHHHHcCCCCEEEECCCCCCCCCcccCCHHHHHHHHhhhhHHHHHHHHHHHHHHHhcC-CCCEEEEEcc
Confidence 4333333333 3789999999975321 12222 34567876665555554 4432 2467777776
Q ss_pred ChhhHHHHHHHHCCCCCCCcEEEeecccHHHHHHHHHHHcCCCCCCeee
Q 019990 133 PANTNALILKEFAPSIPAKNITCLTRLDHNRAMGQISERLKVHVSDVKN 181 (332)
Q Consensus 133 p~~~~~~~~~~~~~~~~~~~i~~~t~l~~~r~~~~~a~~~~v~~~~v~~ 181 (332)
.... .+.+....|+.+|.....+.+.++..+. +..|+.
T Consensus 166 ~~~~---------~~~~~~~~Y~asKaa~~~~~~~la~e~~--~~gi~v 203 (280)
T 3pgx_A 166 SAGL---------KATPGNGHYSASKHGLTALTNTLAIELG--EYGIRV 203 (280)
T ss_dssp GGGT---------SCCTTBHHHHHHHHHHHHHHHHHHHHHG--GGTEEE
T ss_pred hhhc---------cCCCCchhHHHHHHHHHHHHHHHHHHhh--hcCeEE
Confidence 4321 2233344678888888888888888754 334553
|
| >1wma_A Carbonyl reductase [NADPH] 1; oxidoreductase; HET: AB3 NDP PE5 P33; 1.24A {Homo sapiens} SCOP: c.2.1.2 PDB: 3bhi_A* 3bhj_A* 3bhm_A* 2pfg_A* 1n5d_A* 2hrb_A* | Back alignment and structure |
|---|
Probab=98.65 E-value=3.8e-08 Score=87.19 Aligned_cols=121 Identities=16% Similarity=0.062 Sum_probs=77.5
Q ss_pred CCcEEEEEcCCChhHHHHHHHHHh-cccCCCCCCeEEEEEecccchhhhhhhHhhhhhhc--c-CCccceEEeCCHHHHh
Q 019990 4 NPLRVLVTGAAGQIGYALVPMIAR-GIMLGPDQPVILHMLDIEPAAEALNGVKMELIDAA--F-PLLKGVVATTDVVEAC 79 (332)
Q Consensus 4 ~~~kI~VtGaaG~IGs~l~~~L~~-~~~~~~~~~~~i~l~D~~~~~~~~~~~~~dl~~~~--~-~~~~~v~~~~~~~~a~ 79 (332)
++++|+||||+|+||++++..|++ .|. +|++++++. +.+.....++.... . ....|++...++.+++
T Consensus 3 ~~k~vlITGasggIG~~~a~~L~~~~g~-------~V~~~~r~~--~~~~~~~~~l~~~~~~~~~~~~Dl~~~~~~~~~~ 73 (276)
T 1wma_A 3 GIHVALVTGGNKGIGLAIVRDLCRLFSG-------DVVLTARDV--TRGQAAVQQLQAEGLSPRFHQLDIDDLQSIRALR 73 (276)
T ss_dssp CCCEEEESSCSSHHHHHHHHHHHHHSSS-------EEEEEESSH--HHHHHHHHHHHHTTCCCEEEECCTTCHHHHHHHH
T ss_pred CCCEEEEeCCCcHHHHHHHHHHHHhcCC-------eEEEEeCCh--HHHHHHHHHHHhcCCeeEEEECCCCCHHHHHHHH
Confidence 467899999999999999999998 775 899998753 22333333332211 1 1123443333344444
Q ss_pred C-------CCcEEEEecCCCCCCC--CC----hhHHHhhhHHHHHHHHHHHHhhcCCCcEEEEEeCC
Q 019990 80 K-------DVNIAVMVGGFPRKEG--ME----RKDVMSKNVSIYKAQASALEKHAAPNCKVLVVANP 133 (332)
Q Consensus 80 ~-------~aDiVi~~ag~~~~~~--~~----~~~~~~~N~~~~~~i~~~i~~~~~~~~~viv~snp 133 (332)
+ +.|+|||.||...... .+ ....+..|+.....+++.+..+..+..++|++|+.
T Consensus 74 ~~~~~~~g~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~g~iv~~sS~ 140 (276)
T 1wma_A 74 DFLRKEYGGLDVLVNNAGIAFKVADPTPFHIQAEVTMKTNFFGTRDVCTELLPLIKPQGRVVNVSSI 140 (276)
T ss_dssp HHHHHHHSSEEEEEECCCCCCCTTCCSCHHHHHHHHHHHHTHHHHHHHHHHGGGEEEEEEEEEECCH
T ss_pred HHHHHhcCCCCEEEECCcccccCCCccccHHHHHhhhheeeeeHHHHHHHHHHhhCCCCEEEEECCh
Confidence 3 7899999998753221 11 12357789999999999888764223477777753
|
| >3uce_A Dehydrogenase; rossmann fold, oxidoreductase; HET: NDP; 1.80A {Vibrio vulnificus} | Back alignment and structure |
|---|
Probab=98.65 E-value=3.3e-08 Score=85.36 Aligned_cols=140 Identities=9% Similarity=0.086 Sum_probs=91.5
Q ss_pred CCCCcEEEEEcCCChhHHHHHHHHHhcccCCCCCCeEEEEEecccchhhhhhhHhhhhhhccCCccceEEeCCHHHHhCC
Q 019990 2 AKNPLRVLVTGAAGQIGYALVPMIARGIMLGPDQPVILHMLDIEPAAEALNGVKMELIDAAFPLLKGVVATTDVVEACKD 81 (332)
Q Consensus 2 ~~~~~kI~VtGaaG~IGs~l~~~L~~~~~~~~~~~~~i~l~D~~~~~~~~~~~~~dl~~~~~~~~~~v~~~~~~~~a~~~ 81 (332)
..+.++++||||+|+||.+++..|++.|. +|++.|++.. .|+.+... .....+.+..
T Consensus 3 ~~~~k~vlVTGas~gIG~~~a~~l~~~G~-------~V~~~~r~~~--------~D~~~~~~--------v~~~~~~~g~ 59 (223)
T 3uce_A 3 GSDKTVYVVLGGTSGIGAELAKQLESEHT-------IVHVASRQTG--------LDISDEKS--------VYHYFETIGA 59 (223)
T ss_dssp --CCEEEEEETTTSHHHHHHHHHHCSTTE-------EEEEESGGGT--------CCTTCHHH--------HHHHHHHHCS
T ss_pred CCCCCEEEEECCCCHHHHHHHHHHHHCCC-------EEEEecCCcc--------cCCCCHHH--------HHHHHHHhCC
Confidence 34567899999999999999999998875 8899887531 23322100 0112223457
Q ss_pred CcEEEEecCCCCCC----CCChh---HHHhhhHHHHHHHHHHHHhhcCCCcEEEEEeCChhhHHHHHHHHCCCCCCCcEE
Q 019990 82 VNIAVMVGGFPRKE----GMERK---DVMSKNVSIYKAQASALEKHAAPNCKVLVVANPANTNALILKEFAPSIPAKNIT 154 (332)
Q Consensus 82 aDiVi~~ag~~~~~----~~~~~---~~~~~N~~~~~~i~~~i~~~~~~~~~viv~snp~~~~~~~~~~~~~~~~~~~i~ 154 (332)
.|++||.||..... ..+.+ ..++.|+.....+.+.+..+-.+.++++++|+.... .+.+....|
T Consensus 60 id~lv~nAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~g~iv~~sS~~~~---------~~~~~~~~Y 130 (223)
T 3uce_A 60 FDHLIVTAGSYAPAGKVVDVEVTQAKYAFDTKFWGAVLAAKHGARYLKQGGSITLTSGMLSR---------KVVANTYVK 130 (223)
T ss_dssp EEEEEECCCCCCCCSCTTTSCHHHHHHHHHHHHHHHHHHHHHHGGGEEEEEEEEEECCGGGT---------SCCTTCHHH
T ss_pred CCEEEECCCCCCCCCCcccCCHHHHHhhheeeeeeHHHHHHHHHhhccCCeEEEEecchhhc---------cCCCCchHH
Confidence 89999999964211 12222 356788888888888887764234567777753221 223444467
Q ss_pred EeecccHHHHHHHHHHHcC
Q 019990 155 CLTRLDHNRAMGQISERLK 173 (332)
Q Consensus 155 ~~t~l~~~r~~~~~a~~~~ 173 (332)
+.+|.....+.+.+++.++
T Consensus 131 ~asK~a~~~~~~~la~e~~ 149 (223)
T 3uce_A 131 AAINAAIEATTKVLAKELA 149 (223)
T ss_dssp HHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHhhc
Confidence 8888888888888888886
|
| >3un1_A Probable oxidoreductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.45A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=98.65 E-value=1.3e-08 Score=90.18 Aligned_cols=153 Identities=13% Similarity=0.082 Sum_probs=91.9
Q ss_pred CCCcEEEEEcCCChhHHHHHHHHHhcccCCCCCCeEEEEEecccchhhhhhhHhhhhhhccCCccceEEeCCHHHHh---
Q 019990 3 KNPLRVLVTGAAGQIGYALVPMIARGIMLGPDQPVILHMLDIEPAAEALNGVKMELIDAAFPLLKGVVATTDVVEAC--- 79 (332)
Q Consensus 3 ~~~~kI~VtGaaG~IGs~l~~~L~~~~~~~~~~~~~i~l~D~~~~~~~~~~~~~dl~~~~~~~~~~v~~~~~~~~a~--- 79 (332)
.+.++|+||||+|+||++++..|++.|. +|++.|++.. ..... .. .....|++...++.+++
T Consensus 26 ~~~k~vlVTGas~gIG~aia~~l~~~G~-------~V~~~~r~~~--~~~~~-----~~-~~~~~Dv~d~~~v~~~~~~~ 90 (260)
T 3un1_A 26 NQQKVVVITGASQGIGAGLVRAYRDRNY-------RVVATSRSIK--PSADP-----DI-HTVAGDISKPETADRIVREG 90 (260)
T ss_dssp TTCCEEEESSCSSHHHHHHHHHHHHTTC-------EEEEEESSCC--CCSST-----TE-EEEESCTTSHHHHHHHHHHH
T ss_pred cCCCEEEEeCCCCHHHHHHHHHHHHCCC-------EEEEEeCChh--hcccC-----ce-EEEEccCCCHHHHHHHHHHH
Confidence 3457899999999999999999999886 8999997642 11110 00 00112333333333333
Q ss_pred ----CCCcEEEEecCCCCCC---CCCh---hHHHhhhHHHHHHHHHHH----HhhcCCCcEEEEEeCChhhHHHHHHHHC
Q 019990 80 ----KDVNIAVMVGGFPRKE---GMER---KDVMSKNVSIYKAQASAL----EKHAAPNCKVLVVANPANTNALILKEFA 145 (332)
Q Consensus 80 ----~~aDiVi~~ag~~~~~---~~~~---~~~~~~N~~~~~~i~~~i----~~~~~~~~~viv~snp~~~~~~~~~~~~ 145 (332)
.+.|++|+.||..... ..+. ...++.|+.....+.+++ .+. ...++|++|+.... . .
T Consensus 91 ~~~~g~iD~lv~nAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~m~~~--~~g~iv~isS~~~~------~-~ 161 (260)
T 3un1_A 91 IERFGRIDSLVNNAGVFLAKPFVEMTQEDYDHNLGVNVAGFFHITQRAAAEMLKQ--GSGHIVSITTSLVD------Q-P 161 (260)
T ss_dssp HHHHSCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHT--TCEEEEEECCTTTT------S-C
T ss_pred HHHCCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHc--CCcEEEEEechhhc------c-C
Confidence 3799999999975321 1122 235667887776666655 333 24567777653210 0 0
Q ss_pred CCCCCCcEEEeecccHHHHHHHHHHHcCCCCCCeee
Q 019990 146 PSIPAKNITCLTRLDHNRAMGQISERLKVHVSDVKN 181 (332)
Q Consensus 146 ~~~~~~~i~~~t~l~~~r~~~~~a~~~~v~~~~v~~ 181 (332)
...++...|+.+|.....+.+.++..++ +..|+.
T Consensus 162 ~~~~~~~~Y~~sKaa~~~l~~~la~e~~--~~gI~v 195 (260)
T 3un1_A 162 MVGMPSALASLTKGGLNAVTRSLAMEFS--RSGVRV 195 (260)
T ss_dssp BTTCCCHHHHHHHHHHHHHHHHHHHHTT--TTTEEE
T ss_pred CCCCccHHHHHHHHHHHHHHHHHHHHhC--cCCeEE
Confidence 1112233567778888888888888874 445664
|
| >1vl8_A Gluconate 5-dehydrogenase; TM0441, structural genomics, JCSG structure initiative, PSI, joint center for structural GENO oxidoreductase; HET: NAP; 2.07A {Thermotoga maritima} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=98.64 E-value=1.1e-07 Score=84.64 Aligned_cols=157 Identities=11% Similarity=0.101 Sum_probs=93.4
Q ss_pred CCcEEEEEcCCChhHHHHHHHHHhcccCCCCCCeEEEEEecccchhhhhhhHhhh-hhhc---cCCccceEEeCCHHHHh
Q 019990 4 NPLRVLVTGAAGQIGYALVPMIARGIMLGPDQPVILHMLDIEPAAEALNGVKMEL-IDAA---FPLLKGVVATTDVVEAC 79 (332)
Q Consensus 4 ~~~kI~VtGaaG~IGs~l~~~L~~~~~~~~~~~~~i~l~D~~~~~~~~~~~~~dl-~~~~---~~~~~~v~~~~~~~~a~ 79 (332)
+.++|+||||+|+||.+++..|++.|. +|++++++. +.+.....++ .... .....|++...++.+++
T Consensus 20 ~~k~~lVTGas~gIG~~ia~~l~~~G~-------~V~~~~r~~--~~~~~~~~~l~~~~~~~~~~~~~Dl~~~~~v~~~~ 90 (267)
T 1vl8_A 20 RGRVALVTGGSRGLGFGIAQGLAEAGC-------SVVVASRNL--EEASEAAQKLTEKYGVETMAFRCDVSNYEEVKKLL 90 (267)
T ss_dssp TTCEEEEETTTSHHHHHHHHHHHHTTC-------EEEEEESCH--HHHHHHHHHHHHHHCCCEEEEECCTTCHHHHHHHH
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHCCC-------EEEEEeCCH--HHHHHHHHHHHHhcCCeEEEEEcCCCCHHHHHHHH
Confidence 356899999999999999999999885 899999863 2333222233 1111 01123443333333333
Q ss_pred -------CCCcEEEEecCCCCCC---CCCh---hHHHhhhHHHHHHHHHHHHhhc--CCCcEEEEEeCCh-hhHHHHHHH
Q 019990 80 -------KDVNIAVMVGGFPRKE---GMER---KDVMSKNVSIYKAQASALEKHA--APNCKVLVVANPA-NTNALILKE 143 (332)
Q Consensus 80 -------~~aDiVi~~ag~~~~~---~~~~---~~~~~~N~~~~~~i~~~i~~~~--~~~~~viv~snp~-~~~~~~~~~ 143 (332)
...|++|+.||..... ..+. ...+..|+.....+.+++..+- ....++|++|+.. ..
T Consensus 91 ~~~~~~~g~iD~lvnnAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~m~~~~~g~iv~isS~~~~~------- 163 (267)
T 1vl8_A 91 EAVKEKFGKLDTVVNAAGINRRHPAEEFPLDEFRQVIEVNLFGTYYVCREAFSLLRESDNPSIINIGSLTVEE------- 163 (267)
T ss_dssp HHHHHHHSCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHTTCSSCEEEEECCGGGTC-------
T ss_pred HHHHHHcCCCCEEEECCCcCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCCcEEEEECCcchhc-------
Confidence 3789999999975321 1122 2356678777766665553321 1235777777632 11
Q ss_pred HCCCCCCCcEEEeecccHHHHHHHHHHHcCCCCCCee
Q 019990 144 FAPSIPAKNITCLTRLDHNRAMGQISERLKVHVSDVK 180 (332)
Q Consensus 144 ~~~~~~~~~i~~~t~l~~~r~~~~~a~~~~v~~~~v~ 180 (332)
.+.+....|+.+|.....+.+.+++.++ +..|+
T Consensus 164 --~~~~~~~~Y~asK~a~~~~~~~la~e~~--~~gi~ 196 (267)
T 1vl8_A 164 --VTMPNISAYAASKGGVASLTKALAKEWG--RYGIR 196 (267)
T ss_dssp --CCSSSCHHHHHHHHHHHHHHHHHHHHHG--GGTCE
T ss_pred --cCCCCChhHHHHHHHHHHHHHHHHHHhc--ccCeE
Confidence 1233334677788888888888888764 33455
|
| >2uvd_A 3-oxoacyl-(acyl-carrier-protein) reductase; beta-ketoacyl- (acyl carrier protein) reductase, short-chain dehydrogenase/reductase (SDR); 2.4A {Bacillus anthracis} | Back alignment and structure |
|---|
Probab=98.64 E-value=7.9e-08 Score=84.26 Aligned_cols=157 Identities=18% Similarity=0.176 Sum_probs=92.5
Q ss_pred CCcEEEEEcCCChhHHHHHHHHHhcccCCCCCCeEEEEEecccchhhhhhhHhhhhhhc--c-CCccceEEeCCHHHHhC
Q 019990 4 NPLRVLVTGAAGQIGYALVPMIARGIMLGPDQPVILHMLDIEPAAEALNGVKMELIDAA--F-PLLKGVVATTDVVEACK 80 (332)
Q Consensus 4 ~~~kI~VtGaaG~IGs~l~~~L~~~~~~~~~~~~~i~l~D~~~~~~~~~~~~~dl~~~~--~-~~~~~v~~~~~~~~a~~ 80 (332)
+.++|+||||+|+||++++..|++.|. +|++.++.. .+.+.....++.... . ....|++...++.++++
T Consensus 3 ~~k~vlVTGas~giG~~ia~~l~~~G~-------~V~~~~r~~-~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~ 74 (246)
T 2uvd_A 3 KGKVALVTGASRGIGRAIAIDLAKQGA-------NVVVNYAGN-EQKANEVVDEIKKLGSDAIAVRADVANAEDVTNMVK 74 (246)
T ss_dssp TTCEEEETTCSSHHHHHHHHHHHHTTC-------EEEEEESSC-HHHHHHHHHHHHHTTCCEEEEECCTTCHHHHHHHHH
T ss_pred CCCEEEEECCCcHHHHHHHHHHHHCCC-------EEEEEeCCC-HHHHHHHHHHHHhcCCcEEEEEcCCCCHHHHHHHHH
Confidence 457899999999999999999999885 888888722 123332222332211 0 11234433333433333
Q ss_pred -------CCcEEEEecCCCCCC---CCCh---hHHHhhhHHHH----HHHHHHHHhhcCCCcEEEEEeCChhhHHHHHHH
Q 019990 81 -------DVNIAVMVGGFPRKE---GMER---KDVMSKNVSIY----KAQASALEKHAAPNCKVLVVANPANTNALILKE 143 (332)
Q Consensus 81 -------~aDiVi~~ag~~~~~---~~~~---~~~~~~N~~~~----~~i~~~i~~~~~~~~~viv~snp~~~~~~~~~~ 143 (332)
+.|++||.||..... ..+. ...++.|+... +.+++.+++.. ..++|++|+....
T Consensus 75 ~~~~~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~--~g~iv~isS~~~~------- 145 (246)
T 2uvd_A 75 QTVDVFGQVDILVNNAGVTKDNLLMRMKEEEWDTVINTNLKGVFLCTKAVSRFMMRQR--HGRIVNIASVVGV------- 145 (246)
T ss_dssp HHHHHHSCCCEEEECCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHT--CEEEEEECCTHHH-------
T ss_pred HHHHHcCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcC--CcEEEEECCHHhc-------
Confidence 799999999975321 1122 23567787764 44555555443 3577777764321
Q ss_pred HCCCCCCCcEEEeecccHHHHHHHHHHHcCCCCCCeee
Q 019990 144 FAPSIPAKNITCLTRLDHNRAMGQISERLKVHVSDVKN 181 (332)
Q Consensus 144 ~~~~~~~~~i~~~t~l~~~r~~~~~a~~~~v~~~~v~~ 181 (332)
.+.+....|+.+|.....+.+.+++.+. +..|+.
T Consensus 146 --~~~~~~~~Y~asK~a~~~~~~~la~e~~--~~gi~v 179 (246)
T 2uvd_A 146 --TGNPGQANYVAAKAGVIGLTKTSAKELA--SRNITV 179 (246)
T ss_dssp --HCCTTBHHHHHHHHHHHHHHHHHHHHHG--GGTEEE
T ss_pred --CCCCCCchHHHHHHHHHHHHHHHHHHhh--hcCeEE
Confidence 1223334567777777777777777764 345664
|
| >3u9l_A 3-oxoacyl-[acyl-carrier-protein] reductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.10A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=98.64 E-value=1.9e-08 Score=92.20 Aligned_cols=162 Identities=12% Similarity=0.085 Sum_probs=93.1
Q ss_pred CCCCCcEEEEEcCCChhHHHHHHHHHhcccCCCCCCeEEEEEecccc---hhhhhhhHhhhhhhc--c-CCccceEEeCC
Q 019990 1 MAKNPLRVLVTGAAGQIGYALVPMIARGIMLGPDQPVILHMLDIEPA---AEALNGVKMELIDAA--F-PLLKGVVATTD 74 (332)
Q Consensus 1 m~~~~~kI~VtGaaG~IGs~l~~~L~~~~~~~~~~~~~i~l~D~~~~---~~~~~~~~~dl~~~~--~-~~~~~v~~~~~ 74 (332)
|+++.++|+||||+|+||++++..|++.|. +|++.+++.. .+.+......+.... . ....|++...+
T Consensus 1 M~m~~k~vlVTGas~GIG~aia~~L~~~G~-------~V~~~~r~~~~r~~~~~~~l~~~~~~~~~~~~~~~~Dvtd~~~ 73 (324)
T 3u9l_A 1 MVMSKKIILITGASSGFGRLTAEALAGAGH-------RVYASMRDIVGRNASNVEAIAGFARDNDVDLRTLELDVQSQVS 73 (324)
T ss_dssp ----CCEEEESSCSSHHHHHHHHHHHHTTC-------EEEEEESCTTTTTHHHHHHHHHHHHHHTCCEEEEECCTTCHHH
T ss_pred CCCCCCEEEEECCCcHHHHHHHHHHHHCCC-------EEEEecCcccccCHHHHHHHHHHHHhcCCcEEEEEeecCCHHH
Confidence 666678899999999999999999999886 7877665321 111221111111111 0 11234444444
Q ss_pred HHHHhC-------CCcEEEEecCCCCCC---CCCh---hHHHhhhHHHHHHHHHHH----HhhcCCCcEEEEEeCChhhH
Q 019990 75 VVEACK-------DVNIAVMVGGFPRKE---GMER---KDVMSKNVSIYKAQASAL----EKHAAPNCKVLVVANPANTN 137 (332)
Q Consensus 75 ~~~a~~-------~aDiVi~~ag~~~~~---~~~~---~~~~~~N~~~~~~i~~~i----~~~~~~~~~viv~snp~~~~ 137 (332)
+.++++ +.|++|+.||..... ..+. ...++.|+.+...+.+++ ++.+ .+++|++|+.....
T Consensus 74 v~~~~~~~~~~~g~iD~lVnnAG~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~a~lp~m~~~~--~g~iV~isS~~~~~ 151 (324)
T 3u9l_A 74 VDRAIDQIIGEDGRIDVLIHNAGHMVFGPAEAFTPEQFAELYDINVLSTQRVNRAALPHMRRQK--HGLLIWISSSSSAG 151 (324)
T ss_dssp HHHHHHHHHHHHSCCSEEEECCCCCBCSCGGGSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHT--CEEEEEECCGGGTS
T ss_pred HHHHHHHHHHHcCCCCEEEECCCcCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcC--CCEEEEEecchhcc
Confidence 444444 899999999974321 1122 235678887777776666 5443 45777777633210
Q ss_pred HHHHHHHCCCCCCCcEEEeecccHHHHHHHHHHHcCCCCCCeee
Q 019990 138 ALILKEFAPSIPAKNITCLTRLDHNRAMGQISERLKVHVSDVKN 181 (332)
Q Consensus 138 ~~~~~~~~~~~~~~~i~~~t~l~~~r~~~~~a~~~~v~~~~v~~ 181 (332)
...+....|+.+|.....+...++..+. +..|+.
T Consensus 152 --------~~~~~~~~Y~asKaa~~~~~~~la~el~--~~gI~v 185 (324)
T 3u9l_A 152 --------GTPPYLAPYFAAKAAMDAIAVQYARELS--RWGIET 185 (324)
T ss_dssp --------CCCSSCHHHHHHHHHHHHHHHHHHHHHH--TTTEEE
T ss_pred --------CCCCcchhHHHHHHHHHHHHHHHHHHhh--hhCcEE
Confidence 1122223577888888888888887753 344553
|
| >3a28_C L-2.3-butanediol dehydrogenase; chiral substrate recognition, oxidoreductase; HET: NAD; 2.00A {Brevibacterium saccharolyticum} | Back alignment and structure |
|---|
Probab=98.64 E-value=8.1e-08 Score=84.82 Aligned_cols=158 Identities=16% Similarity=0.105 Sum_probs=93.2
Q ss_pred CcEEEEEcCCChhHHHHHHHHHhcccCCCCCCeEEEEEecccchhhhhhhHhhhhhhc--c-CCccceEEeCCHHHHhC-
Q 019990 5 PLRVLVTGAAGQIGYALVPMIARGIMLGPDQPVILHMLDIEPAAEALNGVKMELIDAA--F-PLLKGVVATTDVVEACK- 80 (332)
Q Consensus 5 ~~kI~VtGaaG~IGs~l~~~L~~~~~~~~~~~~~i~l~D~~~~~~~~~~~~~dl~~~~--~-~~~~~v~~~~~~~~a~~- 80 (332)
.++++||||+|+||++++..|++.|. +|++.|++...+.+.....++.... . ....|++...++.++++
T Consensus 2 ~k~vlVTGas~gIG~~ia~~l~~~G~-------~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~ 74 (258)
T 3a28_C 2 SKVAMVTGGAQGIGRGISEKLAADGF-------DIAVADLPQQEEQAAETIKLIEAADQKAVFVGLDVTDKANFDSAIDE 74 (258)
T ss_dssp CCEEEEETTTSHHHHHHHHHHHHHTC-------EEEEEECGGGHHHHHHHHHHHHTTTCCEEEEECCTTCHHHHHHHHHH
T ss_pred CCEEEEeCCCcHHHHHHHHHHHHCCC-------EEEEEeCCcchHHHHHHHHHHHhcCCcEEEEEccCCCHHHHHHHHHH
Confidence 35799999999999999999999885 8999998642110322222332211 0 11134433333333333
Q ss_pred ------CCcEEEEecCCCCCC---CCCh---hHHHhhhHHHHHHHHHHHHh----hcCCCcEEEEEeCChhhHHHHHHHH
Q 019990 81 ------DVNIAVMVGGFPRKE---GMER---KDVMSKNVSIYKAQASALEK----HAAPNCKVLVVANPANTNALILKEF 144 (332)
Q Consensus 81 ------~aDiVi~~ag~~~~~---~~~~---~~~~~~N~~~~~~i~~~i~~----~~~~~~~viv~snp~~~~~~~~~~~ 144 (332)
..|++|+.||..... ..+. ...+..|+.....+.+.+.. .+ ...++|++|+....
T Consensus 75 ~~~~~g~iD~lv~nAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~-~~g~iv~isS~~~~-------- 145 (258)
T 3a28_C 75 AAEKLGGFDVLVNNAGIAQIKPLLEVTEEDLKQIYSVNVFSVFFGIQAASRKFDELG-VKGKIINAASIAAI-------- 145 (258)
T ss_dssp HHHHHTCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHT-CCCEEEEECCGGGT--------
T ss_pred HHHHhCCCCEEEECCCCCCCCChhhCCHHHHHHHHHhccHHHHHHHHHHHHHHHhcC-CCcEEEEECcchhc--------
Confidence 789999999974321 1122 23566777666555555443 33 22577777764321
Q ss_pred CCCCCCCcEEEeecccHHHHHHHHHHHcCCCCCCeee
Q 019990 145 APSIPAKNITCLTRLDHNRAMGQISERLKVHVSDVKN 181 (332)
Q Consensus 145 ~~~~~~~~i~~~t~l~~~r~~~~~a~~~~v~~~~v~~ 181 (332)
.+.+....|+.+|.....+.+.+++.++ +..|+.
T Consensus 146 -~~~~~~~~Y~~sK~a~~~~~~~la~e~~--~~gi~v 179 (258)
T 3a28_C 146 -QGFPILSAYSTTKFAVRGLTQAAAQELA--PKGHTV 179 (258)
T ss_dssp -SCCTTCHHHHHHHHHHHHHHHHHHHHHG--GGTCEE
T ss_pred -cCCCCchhHHHHHHHHHHHHHHHHHHHH--hhCeEE
Confidence 1234444677788877888888887764 344553
|
| >3sju_A Keto reductase; short-chain dehydrogenase, oxidoreductase; HET: NDP; 2.40A {Streptomyces griseoruber} | Back alignment and structure |
|---|
Probab=98.64 E-value=1.2e-07 Score=84.78 Aligned_cols=157 Identities=15% Similarity=0.117 Sum_probs=96.2
Q ss_pred CcEEEEEcCCChhHHHHHHHHHhcccCCCCCCeEEEEEecccchhhhhhhHhhhhhhcc---CCccceEEeCCHHHHh--
Q 019990 5 PLRVLVTGAAGQIGYALVPMIARGIMLGPDQPVILHMLDIEPAAEALNGVKMELIDAAF---PLLKGVVATTDVVEAC-- 79 (332)
Q Consensus 5 ~~kI~VtGaaG~IGs~l~~~L~~~~~~~~~~~~~i~l~D~~~~~~~~~~~~~dl~~~~~---~~~~~v~~~~~~~~a~-- 79 (332)
.++++||||+|+||.+++..|++.|. +|++.|++. +.+.....++..... ....|++...++.+++
T Consensus 24 ~k~~lVTGas~GIG~aia~~la~~G~-------~V~~~~r~~--~~~~~~~~~l~~~~~~~~~~~~Dv~d~~~v~~~~~~ 94 (279)
T 3sju_A 24 PQTAFVTGVSSGIGLAVARTLAARGI-------AVYGCARDA--KNVSAAVDGLRAAGHDVDGSSCDVTSTDEVHAAVAA 94 (279)
T ss_dssp -CEEEEESTTSHHHHHHHHHHHHTTC-------EEEEEESCH--HHHHHHHHHHHTTTCCEEEEECCTTCHHHHHHHHHH
T ss_pred CCEEEEeCCCCHHHHHHHHHHHHCCC-------EEEEEeCCH--HHHHHHHHHHHhcCCcEEEEECCCCCHHHHHHHHHH
Confidence 46799999999999999999999885 899999863 334333333432111 1123444333333333
Q ss_pred -----CCCcEEEEecCCCCCC---CCCh---hHHHhhhHHHHHHHHHHHHhh----cCCCcEEEEEeCChhhHHHHHHHH
Q 019990 80 -----KDVNIAVMVGGFPRKE---GMER---KDVMSKNVSIYKAQASALEKH----AAPNCKVLVVANPANTNALILKEF 144 (332)
Q Consensus 80 -----~~aDiVi~~ag~~~~~---~~~~---~~~~~~N~~~~~~i~~~i~~~----~~~~~~viv~snp~~~~~~~~~~~ 144 (332)
...|++|+.||..... ..+. ...++.|+.....+.+++... ....+++|++|+....
T Consensus 95 ~~~~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~~~~~g~iV~isS~~~~-------- 166 (279)
T 3sju_A 95 AVERFGPIGILVNSAGRNGGGETADLDDALWADVLDTNLTGVFRVTREVLRAGGMREAGWGRIVNIASTGGK-------- 166 (279)
T ss_dssp HHHHHCSCCEEEECCCCCCCSCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHSSHHHHTCEEEEEECCGGGT--------
T ss_pred HHHHcCCCcEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHhchhhHhhcCCcEEEEECChhhc--------
Confidence 3689999999974321 1122 235667887777776665431 0124577777764321
Q ss_pred CCCCCCCcEEEeecccHHHHHHHHHHHcCCCCCCeee
Q 019990 145 APSIPAKNITCLTRLDHNRAMGQISERLKVHVSDVKN 181 (332)
Q Consensus 145 ~~~~~~~~i~~~t~l~~~r~~~~~a~~~~v~~~~v~~ 181 (332)
.+.+....|+.+|.....+.+.++..++ +..|+.
T Consensus 167 -~~~~~~~~Y~asKaa~~~l~~~la~e~~--~~gi~v 200 (279)
T 3sju_A 167 -QGVMYAAPYTASKHGVVGFTKSVGFELA--KTGITV 200 (279)
T ss_dssp -SCCTTCHHHHHHHHHHHHHHHHHHHHTG--GGTEEE
T ss_pred -cCCCCChhHHHHHHHHHHHHHHHHHHHH--hhCcEE
Confidence 2233344678888888888888888764 445664
|
| >4da9_A Short-chain dehydrogenase/reductase; structural genomics, protein structure initiative, PSI-biology; 2.50A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=98.64 E-value=1.3e-07 Score=84.69 Aligned_cols=163 Identities=13% Similarity=0.127 Sum_probs=94.4
Q ss_pred CcEEEEEcCCChhHHHHHHHHHhcccCCCCCCeEEEEEecccchhhhhhhHhhhhhhcc---CCccceEEeCCHHHHhC-
Q 019990 5 PLRVLVTGAAGQIGYALVPMIARGIMLGPDQPVILHMLDIEPAAEALNGVKMELIDAAF---PLLKGVVATTDVVEACK- 80 (332)
Q Consensus 5 ~~kI~VtGaaG~IGs~l~~~L~~~~~~~~~~~~~i~l~D~~~~~~~~~~~~~dl~~~~~---~~~~~v~~~~~~~~a~~- 80 (332)
.++++||||+|+||++++..|++.|. +|+++|++.. +.+.....++..... ....|++...++.++++
T Consensus 29 ~k~~lVTGas~GIG~aia~~la~~G~-------~V~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~Dv~d~~~v~~~~~~ 100 (280)
T 4da9_A 29 RPVAIVTGGRRGIGLGIARALAASGF-------DIAITGIGDA-EGVAPVIAELSGLGARVIFLRADLADLSSHQATVDA 100 (280)
T ss_dssp CCEEEEETTTSHHHHHHHHHHHHTTC-------EEEEEESCCH-HHHHHHHHHHHHTTCCEEEEECCTTSGGGHHHHHHH
T ss_pred CCEEEEecCCCHHHHHHHHHHHHCCC-------eEEEEeCCCH-HHHHHHHHHHHhcCCcEEEEEecCCCHHHHHHHHHH
Confidence 45799999999999999999999886 8999986432 233333333332111 11235544444444443
Q ss_pred ------CCcEEEEecCCC--C-CC--CCCh---hHHHhhhHHHHHHHHHHH----Hhhc-CCCcEEEEEeCChhhHHHHH
Q 019990 81 ------DVNIAVMVGGFP--R-KE--GMER---KDVMSKNVSIYKAQASAL----EKHA-APNCKVLVVANPANTNALIL 141 (332)
Q Consensus 81 ------~aDiVi~~ag~~--~-~~--~~~~---~~~~~~N~~~~~~i~~~i----~~~~-~~~~~viv~snp~~~~~~~~ 141 (332)
..|++|+.||.. . .+ ..+. ...++.|+.....+.+++ .+.. ...+++|++|+....
T Consensus 101 ~~~~~g~iD~lvnnAg~~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~~~~~~g~Iv~isS~~~~----- 175 (280)
T 4da9_A 101 VVAEFGRIDCLVNNAGIASIVRDDFLDLKPENFDTIVGVNLRGTVFFTQAVLKAMLASDARASRSIINITSVSAV----- 175 (280)
T ss_dssp HHHHHSCCCEEEEECC------CCGGGCCHHHHHHHTTTHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCC--------
T ss_pred HHHHcCCCCEEEECCCccccCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHhCCCCCCEEEEEcchhhc-----
Confidence 789999999973 1 11 1122 234567877665555544 3322 114577777764321
Q ss_pred HHHCCCCCCCcEEEeecccHHHHHHHHHHHcCCCCCCeeeeEEEec
Q 019990 142 KEFAPSIPAKNITCLTRLDHNRAMGQISERLKVHVSDVKNVIIWGN 187 (332)
Q Consensus 142 ~~~~~~~~~~~i~~~t~l~~~r~~~~~a~~~~v~~~~v~~~~V~G~ 187 (332)
.+.+....|+.+|.....+.+.++..++ +..|+. +.+.+
T Consensus 176 ----~~~~~~~~Y~asKaa~~~l~~~la~e~~--~~gI~v-n~v~P 214 (280)
T 4da9_A 176 ----MTSPERLDYCMSKAGLAAFSQGLALRLA--ETGIAV-FEVRP 214 (280)
T ss_dssp --------CCHHHHHHHHHHHHHHHHHHHHHT--TTTEEE-EEEEE
T ss_pred ----cCCCCccHHHHHHHHHHHHHHHHHHHHH--HhCcEE-EEEee
Confidence 1123333577888888888888888874 456764 33443
|
| >3edm_A Short chain dehydrogenase; structural genomics, oxidoreductase, PSI-2, P structure initiative; 2.30A {Agrobacterium tumefaciens str} | Back alignment and structure |
|---|
Probab=98.64 E-value=9.6e-08 Score=84.50 Aligned_cols=164 Identities=14% Similarity=0.067 Sum_probs=101.3
Q ss_pred CCcEEEEEcCCChhHHHHHHHHHhcccCCCCCCeEEEEEecccchhhhhhhHhhhhhhcc---CCccceEEeCCHHHHhC
Q 019990 4 NPLRVLVTGAAGQIGYALVPMIARGIMLGPDQPVILHMLDIEPAAEALNGVKMELIDAAF---PLLKGVVATTDVVEACK 80 (332)
Q Consensus 4 ~~~kI~VtGaaG~IGs~l~~~L~~~~~~~~~~~~~i~l~D~~~~~~~~~~~~~dl~~~~~---~~~~~v~~~~~~~~a~~ 80 (332)
+.++++||||+|+||.+++..|++.|. +|++.+.+.. +.+.....++..... ....|++...++.++++
T Consensus 7 ~~k~vlVTGas~GIG~aia~~la~~G~-------~V~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~ 78 (259)
T 3edm_A 7 TNRTIVVAGAGRDIGRACAIRFAQEGA-------NVVLTYNGAA-EGAATAVAEIEKLGRSALAIKADLTNAAEVEAAIS 78 (259)
T ss_dssp TTCEEEEETTTSHHHHHHHHHHHHTTC-------EEEEEECSSC-HHHHHHHHHHHTTTSCCEEEECCTTCHHHHHHHHH
T ss_pred CCCEEEEECCCchHHHHHHHHHHHCCC-------EEEEEcCCCH-HHHHHHHHHHHhcCCceEEEEcCCCCHHHHHHHHH
Confidence 457899999999999999999999885 7888743322 223222233322111 11234444333444333
Q ss_pred -------CCcEEEEecCCCC--CC--CCCh---hHHHhhhHHHHHHHHHHHHhhcCCCcEEEEEeCChhhHHHHHHHHCC
Q 019990 81 -------DVNIAVMVGGFPR--KE--GMER---KDVMSKNVSIYKAQASALEKHAAPNCKVLVVANPANTNALILKEFAP 146 (332)
Q Consensus 81 -------~aDiVi~~ag~~~--~~--~~~~---~~~~~~N~~~~~~i~~~i~~~~~~~~~viv~snp~~~~~~~~~~~~~ 146 (332)
..|++|+.||... .+ ..+. ...++.|+.....+.+++..+-.+.+++|++|+.... . .
T Consensus 79 ~~~~~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~~~~~~~~g~iv~isS~~~~-------~-~ 150 (259)
T 3edm_A 79 AAADKFGEIHGLVHVAGGLIARKTIAEMDEAFWHQVLDVNLTSLFLTAKTALPKMAKGGAIVTFSSQAGR-------D-G 150 (259)
T ss_dssp HHHHHHCSEEEEEECCCCCCCCCCTTTCCHHHHHHHHHHHTHHHHHHHHHHGGGEEEEEEEEEECCHHHH-------H-C
T ss_pred HHHHHhCCCCEEEECCCccCCCCChhhCCHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCEEEEEcCHHhc-------c-C
Confidence 6899999998641 11 1222 2356789888888888887764223567777753221 1 2
Q ss_pred CCCCCcEEEeecccHHHHHHHHHHHcCCCCCCeeeeEEEec
Q 019990 147 SIPAKNITCLTRLDHNRAMGQISERLKVHVSDVKNVIIWGN 187 (332)
Q Consensus 147 ~~~~~~i~~~t~l~~~r~~~~~a~~~~v~~~~v~~~~V~G~ 187 (332)
+.+....|+.+|.....+.+.++..++- . |+. +.+.+
T Consensus 151 ~~~~~~~Y~asKaa~~~l~~~la~e~~~--~-I~v-n~v~P 187 (259)
T 3edm_A 151 GGPGALAYATSKGAVMTFTRGLAKEVGP--K-IRV-NAVCP 187 (259)
T ss_dssp CSTTCHHHHHHHHHHHHHHHHHHHHHTT--T-CEE-EEEEE
T ss_pred CCCCcHHHHHHHHHHHHHHHHHHHHHCC--C-CEE-EEEEE
Confidence 3344446788888888998899998864 3 664 33444
|
| >3sx2_A Putative 3-ketoacyl-(acyl-carrier-protein) reduct; ssgcid, 3-ketoacyl-(acyl-carrier-protein) reductase, mycobac paratuberculosis; HET: NAD; 1.50A {Mycobacterium avium subsp} | Back alignment and structure |
|---|
Probab=98.63 E-value=9.2e-08 Score=85.38 Aligned_cols=163 Identities=15% Similarity=0.091 Sum_probs=94.4
Q ss_pred CCcEEEEEcCCChhHHHHHHHHHhcccCCCCCCeEEEEEecccc----------hhhhhhhHhhhhhhcc---CCccceE
Q 019990 4 NPLRVLVTGAAGQIGYALVPMIARGIMLGPDQPVILHMLDIEPA----------AEALNGVKMELIDAAF---PLLKGVV 70 (332)
Q Consensus 4 ~~~kI~VtGaaG~IGs~l~~~L~~~~~~~~~~~~~i~l~D~~~~----------~~~~~~~~~dl~~~~~---~~~~~v~ 70 (332)
+.++++||||+|+||.+++..|++.|. +|+++|++.. .+.+.....++..... ....|++
T Consensus 12 ~gk~vlVTGas~gIG~~ia~~l~~~G~-------~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~ 84 (278)
T 3sx2_A 12 TGKVAFITGAARGQGRAHAVRLAADGA-------DIIAVDLCDQIASVPYPLATPEELAATVKLVEDIGSRIVARQADVR 84 (278)
T ss_dssp TTCEEEEESTTSHHHHHHHHHHHHTTC-------EEEEEECCSCCTTCSSCCCCHHHHHHHHHHHHHHTCCEEEEECCTT
T ss_pred CCCEEEEECCCChHHHHHHHHHHHCCC-------eEEEEecccccccccccccchHHHHHHHHHHHhcCCeEEEEeCCCC
Confidence 357899999999999999999999886 8999987521 1222222222222111 1123444
Q ss_pred EeCCHHHHhC-------CCcEEEEecCCCCCCCC--ChhHHHhhhHHHHHHHHHHH----HhhcCCCcEEEEEeCChhhH
Q 019990 71 ATTDVVEACK-------DVNIAVMVGGFPRKEGM--ERKDVMSKNVSIYKAQASAL----EKHAAPNCKVLVVANPANTN 137 (332)
Q Consensus 71 ~~~~~~~a~~-------~aDiVi~~ag~~~~~~~--~~~~~~~~N~~~~~~i~~~i----~~~~~~~~~viv~snp~~~~ 137 (332)
...++.++++ ..|++||.||....... .-...++.|+.....+.+++ .+.. ..+++|++|+.....
T Consensus 85 ~~~~v~~~~~~~~~~~g~id~lv~nAg~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~-~~g~iv~isS~~~~~ 163 (278)
T 3sx2_A 85 DRESLSAALQAGLDELGRLDIVVANAGIAPMSAGDDGWHDVIDVNLTGVYHTIKVAIPTLVKQG-TGGSIVLISSSAGLA 163 (278)
T ss_dssp CHHHHHHHHHHHHHHHCCCCEEEECCCCCCCSSTHHHHHHHHHHHTHHHHHHHHHHHHHHHHHC-SCEEEEEECCGGGTS
T ss_pred CHHHHHHHHHHHHHHcCCCCEEEECCCCCCCCCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhCC-CCcEEEEEccHHhcC
Confidence 4334444433 78999999997532211 11245677877666666554 3332 346777777643210
Q ss_pred HHHHHHHCCCCCCCcEEEeecccHHHHHHHHHHHcCCCCCCeee
Q 019990 138 ALILKEFAPSIPAKNITCLTRLDHNRAMGQISERLKVHVSDVKN 181 (332)
Q Consensus 138 ~~~~~~~~~~~~~~~i~~~t~l~~~r~~~~~a~~~~v~~~~v~~ 181 (332)
.. ....+....|+.+|.....+.+.++..++ +..|+.
T Consensus 164 ~~-----~~~~~~~~~Y~asKaa~~~~~~~la~e~~--~~gi~v 200 (278)
T 3sx2_A 164 GV-----GSADPGSVGYVAAKHGVVGLMRVYANLLA--GQMIRV 200 (278)
T ss_dssp CC-----CCSSHHHHHHHHHHHHHHHHHHHHHHHHG--GGTEEE
T ss_pred CC-----ccCCCCchHhHHHHHHHHHHHHHHHHHHh--ccCcEE
Confidence 00 00001112467778777888888888775 445664
|
| >3zv4_A CIS-2,3-dihydrobiphenyl-2,3-DIOL dehydrogenase; oxidoreductase, short chain dehydrogenase/oxidoreductase, SD comamonas testosteroni; 1.80A {Pandoraea pnomenusa} SCOP: c.2.1.2 PDB: 2y99_A* 3zv3_A 2y93_A 3zv5_A* 3zv6_A* 1bdb_A* | Back alignment and structure |
|---|
Probab=98.63 E-value=1.2e-07 Score=85.07 Aligned_cols=165 Identities=18% Similarity=0.091 Sum_probs=97.7
Q ss_pred CCCCCcEEEEEcCCChhHHHHHHHHHhcccCCCCCCeEEEEEecccchhhhhhhHhhhhhhccCCccceEEeCCHHHH--
Q 019990 1 MAKNPLRVLVTGAAGQIGYALVPMIARGIMLGPDQPVILHMLDIEPAAEALNGVKMELIDAAFPLLKGVVATTDVVEA-- 78 (332)
Q Consensus 1 m~~~~~kI~VtGaaG~IGs~l~~~L~~~~~~~~~~~~~i~l~D~~~~~~~~~~~~~dl~~~~~~~~~~v~~~~~~~~a-- 78 (332)
|+.+.++++||||+|+||.+++..|++.|. +|++.|++. +.+.....++.........|++...++.+.
T Consensus 1 M~l~gk~~lVTGas~GIG~aia~~la~~G~-------~V~~~~r~~--~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~ 71 (281)
T 3zv4_A 1 MKLTGEVALITGGASGLGRALVDRFVAEGA-------RVAVLDKSA--ERLRELEVAHGGNAVGVVGDVRSLQDQKRAAE 71 (281)
T ss_dssp CTTTTCEEEEETCSSHHHHHHHHHHHHTTC-------EEEEEESCH--HHHHHHHHHTBTTEEEEECCTTCHHHHHHHHH
T ss_pred CCcCCCEEEEECCCcHHHHHHHHHHHHCcC-------EEEEEeCCH--HHHHHHHHHcCCcEEEEEcCCCCHHHHHHHHH
Confidence 777788999999999999999999999885 899999853 233322222111001112344333333322
Q ss_pred -----hCCCcEEEEecCCCCCC--------CCCh---hHHHhhhHHHHHHHHHHHHhhc-CCCcEEEEEeCChhhHHHHH
Q 019990 79 -----CKDVNIAVMVGGFPRKE--------GMER---KDVMSKNVSIYKAQASALEKHA-APNCKVLVVANPANTNALIL 141 (332)
Q Consensus 79 -----~~~aDiVi~~ag~~~~~--------~~~~---~~~~~~N~~~~~~i~~~i~~~~-~~~~~viv~snp~~~~~~~~ 141 (332)
+...|++|+.||..... ..+. +..+..|+.....+.+++..+- ...+.+|++++....
T Consensus 72 ~~~~~~g~iD~lvnnAg~~~~~~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~~~~~~~~~g~iv~isS~~~~----- 146 (281)
T 3zv4_A 72 RCLAAFGKIDTLIPNAGIWDYSTALADLPEDKIDAAFDDIFHVNVKGYIHAVKACLPALVSSRGSVVFTISNAGF----- 146 (281)
T ss_dssp HHHHHHSCCCEEECCCCCCCTTCCGGGSCTTTHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEECCGGGT-----
T ss_pred HHHHhcCCCCEEEECCCcCccccccccCChhhhHHHHHHHHhhhhHHHHHHHHHHHHHHHhcCCeEEEEecchhc-----
Confidence 33679999999974211 1111 2245677766666555554321 012466777753321
Q ss_pred HHHCCCCCCCcEEEeecccHHHHHHHHHHHcCCCCCCeeeeEEEec
Q 019990 142 KEFAPSIPAKNITCLTRLDHNRAMGQISERLKVHVSDVKNVIIWGN 187 (332)
Q Consensus 142 ~~~~~~~~~~~i~~~t~l~~~r~~~~~a~~~~v~~~~v~~~~V~G~ 187 (332)
.+.+....|+.+|.....+.+.++..++- . ||. +.+.+
T Consensus 147 ----~~~~~~~~Y~asKaa~~~l~~~la~e~~~--~-Irv-n~v~P 184 (281)
T 3zv4_A 147 ----YPNGGGPLYTATKHAVVGLVRQMAFELAP--H-VRV-NGVAP 184 (281)
T ss_dssp ----SSSSSCHHHHHHHHHHHHHHHHHHHHHTT--T-SEE-EEEEE
T ss_pred ----cCCCCCchhHHHHHHHHHHHHHHHHHhcC--C-CEE-EEEEC
Confidence 12333345788888888888889998873 3 664 33454
|
| >4e3z_A Putative oxidoreductase protein; PSI-biology, structural genomics, protein structure initiati nysgrc,oxidoreductase; 2.00A {Rhizobium etli} | Back alignment and structure |
|---|
Probab=98.63 E-value=3.6e-08 Score=87.78 Aligned_cols=153 Identities=16% Similarity=0.082 Sum_probs=88.9
Q ss_pred CcEEEEEcCCChhHHHHHHHHHhcccCCCCCCeEEEEEecccchhhhhhhHhhhhhhc--c-CCccceEEeCCHHHHh--
Q 019990 5 PLRVLVTGAAGQIGYALVPMIARGIMLGPDQPVILHMLDIEPAAEALNGVKMELIDAA--F-PLLKGVVATTDVVEAC-- 79 (332)
Q Consensus 5 ~~kI~VtGaaG~IGs~l~~~L~~~~~~~~~~~~~i~l~D~~~~~~~~~~~~~dl~~~~--~-~~~~~v~~~~~~~~a~-- 79 (332)
+++|+||||+|+||++++..|++.|. +|++.+.+. .+.+.....++.... . ....|++...++.+++
T Consensus 26 ~k~vlITGas~gIG~a~a~~l~~~G~-------~V~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~v~~~~~~ 97 (272)
T 4e3z_A 26 TPVVLVTGGSRGIGAAVCRLAARQGW-------RVGVNYAAN-REAADAVVAAITESGGEAVAIPGDVGNAADIAAMFSA 97 (272)
T ss_dssp SCEEEETTTTSHHHHHHHHHHHHTTC-------EEEEEESSC-HHHHHHHHHHHHHTTCEEEEEECCTTCHHHHHHHHHH
T ss_pred CCEEEEECCCchHHHHHHHHHHHCCC-------EEEEEcCCC-hhHHHHHHHHHHhcCCcEEEEEcCCCCHHHHHHHHHH
Confidence 45799999999999999999999886 776664322 223333223332211 0 1123443333333333
Q ss_pred -----CCCcEEEEecCCCCCCC----CCh---hHHHhhhHHHHHHHHHHHHhhc-----CCCcEEEEEeCChhhHHHHHH
Q 019990 80 -----KDVNIAVMVGGFPRKEG----MER---KDVMSKNVSIYKAQASALEKHA-----APNCKVLVVANPANTNALILK 142 (332)
Q Consensus 80 -----~~aDiVi~~ag~~~~~~----~~~---~~~~~~N~~~~~~i~~~i~~~~-----~~~~~viv~snp~~~~~~~~~ 142 (332)
...|+||+.||.....+ .+. ...++.|+.....+.+.+...- ...+++|++|+.....
T Consensus 98 ~~~~~g~id~li~nAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~~~~g~iv~isS~~~~~----- 172 (272)
T 4e3z_A 98 VDRQFGRLDGLVNNAGIVDYPQRVDEMSVERIERMLRVNVTGSILCAAEAVRRMSRLYSGQGGAIVNVSSMAAIL----- 172 (272)
T ss_dssp HHHHHSCCCEEEECCCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHCGGGTCCCEEEEEECCTHHHH-----
T ss_pred HHHhCCCCCEEEECCCCCCCCCChhhCCHHHHHHHHhhhhHHHHHHHHHHHHHHHHhccCCCCEEEEEcchHhcc-----
Confidence 37899999999753211 122 2356778776666655554431 1245777777643211
Q ss_pred HHCCCCCCCcEEEeecccHHHHHHHHHHHcC
Q 019990 143 EFAPSIPAKNITCLTRLDHNRAMGQISERLK 173 (332)
Q Consensus 143 ~~~~~~~~~~i~~~t~l~~~r~~~~~a~~~~ 173 (332)
...+....|+.+|.....+...+++.+.
T Consensus 173 ---~~~~~~~~Y~asKaa~~~~~~~la~e~~ 200 (272)
T 4e3z_A 173 ---GSATQYVDYAASKAAIDTFTIGLAREVA 200 (272)
T ss_dssp ---CCTTTCHHHHHHHHHHHHHHHHHHHHHG
T ss_pred ---CCCCCcchhHHHHHHHHHHHHHHHHHHH
Confidence 1111223578888888888888888873
|
| >3tfo_A Putative 3-oxoacyl-(acyl-carrier-protein) reducta; structural genomics, PSI-biology, NEW YORK structural genomi research consortium; 2.08A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=98.63 E-value=1.1e-07 Score=84.56 Aligned_cols=155 Identities=13% Similarity=0.189 Sum_probs=94.8
Q ss_pred CCcEEEEEcCCChhHHHHHHHHHhcccCCCCCCeEEEEEecccchhhhhhhHhhhhhhcc---CCccceEEeCCHHHHh-
Q 019990 4 NPLRVLVTGAAGQIGYALVPMIARGIMLGPDQPVILHMLDIEPAAEALNGVKMELIDAAF---PLLKGVVATTDVVEAC- 79 (332)
Q Consensus 4 ~~~kI~VtGaaG~IGs~l~~~L~~~~~~~~~~~~~i~l~D~~~~~~~~~~~~~dl~~~~~---~~~~~v~~~~~~~~a~- 79 (332)
+.++++||||+|+||.+++..|++.|. +|++.|++. +.+.....++..... ....|++...++.+++
T Consensus 3 ~~k~~lVTGas~GIG~aia~~la~~G~-------~V~~~~r~~--~~~~~~~~~l~~~~~~~~~~~~Dv~d~~~v~~~~~ 73 (264)
T 3tfo_A 3 MDKVILITGASGGIGEGIARELGVAGA-------KILLGARRQ--ARIEAIATEIRDAGGTALAQVLDVTDRHSVAAFAQ 73 (264)
T ss_dssp TTCEEEESSTTSHHHHHHHHHHHHTTC-------EEEEEESSH--HHHHHHHHHHHHTTCEEEEEECCTTCHHHHHHHHH
T ss_pred CCCEEEEeCCccHHHHHHHHHHHHCCC-------EEEEEECCH--HHHHHHHHHHHhcCCcEEEEEcCCCCHHHHHHHHH
Confidence 456899999999999999999999885 899999864 334433334432110 1123444333333332
Q ss_pred ------CCCcEEEEecCCCCCC---CCChh---HHHhhhHHHHHHHHHH----HHhhcCCCcEEEEEeCChhhHHHHHHH
Q 019990 80 ------KDVNIAVMVGGFPRKE---GMERK---DVMSKNVSIYKAQASA----LEKHAAPNCKVLVVANPANTNALILKE 143 (332)
Q Consensus 80 ------~~aDiVi~~ag~~~~~---~~~~~---~~~~~N~~~~~~i~~~----i~~~~~~~~~viv~snp~~~~~~~~~~ 143 (332)
...|++|+.||..... ..+.+ ..++.|+.....+.+. +++. ..+++|++|+....
T Consensus 74 ~~~~~~g~iD~lVnnAG~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~m~~~--~~g~IV~isS~~~~------- 144 (264)
T 3tfo_A 74 AAVDTWGRIDVLVNNAGVMPLSPLAAVKVDEWERMIDVNIKGVLWGIGAVLPIMEAQ--RSGQIINIGSIGAL------- 144 (264)
T ss_dssp HHHHHHSCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHH--TCEEEEEECCGGGT-------
T ss_pred HHHHHcCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhC--CCeEEEEEcCHHHc-------
Confidence 3789999999975321 11222 3466777666544444 4443 24677777764321
Q ss_pred HCCCCCCCcEEEeecccHHHHHHHHHHHcCCCCCCeeee
Q 019990 144 FAPSIPAKNITCLTRLDHNRAMGQISERLKVHVSDVKNV 182 (332)
Q Consensus 144 ~~~~~~~~~i~~~t~l~~~r~~~~~a~~~~v~~~~v~~~ 182 (332)
.+.+....|+.+|.....+.+.++..+ + .||..
T Consensus 145 --~~~~~~~~Y~asKaal~~l~~~la~e~---~-gIrvn 177 (264)
T 3tfo_A 145 --SVVPTAAVYCATKFAVRAISDGLRQES---T-NIRVT 177 (264)
T ss_dssp --CCCTTCHHHHHHHHHHHHHHHHHHHHC---S-SEEEE
T ss_pred --ccCCCChhHHHHHHHHHHHHHHHHHhC---C-CCEEE
Confidence 223334467788887788888888875 3 67743
|
| >1yde_A Retinal dehydrogenase/reductase 3; oxidoreductase, structural genomics, structural genomics CON SGC; 2.40A {Homo sapiens} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=98.63 E-value=4.5e-08 Score=87.20 Aligned_cols=150 Identities=13% Similarity=0.061 Sum_probs=89.2
Q ss_pred CcEEEEEcCCChhHHHHHHHHHhcccCCCCCCeEEEEEecccchhhhhhhHhhhhhhccCCccceEEeCCHHHHh-----
Q 019990 5 PLRVLVTGAAGQIGYALVPMIARGIMLGPDQPVILHMLDIEPAAEALNGVKMELIDAAFPLLKGVVATTDVVEAC----- 79 (332)
Q Consensus 5 ~~kI~VtGaaG~IGs~l~~~L~~~~~~~~~~~~~i~l~D~~~~~~~~~~~~~dl~~~~~~~~~~v~~~~~~~~a~----- 79 (332)
.++|+||||+|+||.+++..|++.|. +|+++|++. +.+.....++... .....|++...++.+++
T Consensus 9 ~k~vlVTGas~gIG~~ia~~l~~~G~-------~V~~~~r~~--~~~~~~~~~~~~~-~~~~~Dv~d~~~v~~~~~~~~~ 78 (270)
T 1yde_A 9 GKVVVVTGGGRGIGAGIVRAFVNSGA-------RVVICDKDE--SGGRALEQELPGA-VFILCDVTQEDDVKTLVSETIR 78 (270)
T ss_dssp TCEEEEETCSSHHHHHHHHHHHHTTC-------EEEEEESCH--HHHHHHHHHCTTE-EEEECCTTSHHHHHHHHHHHHH
T ss_pred CCEEEEECCCcHHHHHHHHHHHHCCC-------EEEEEeCCH--HHHHHHHHHhcCC-eEEEcCCCCHHHHHHHHHHHHH
Confidence 46899999999999999999999885 899999853 2222222222111 11122333333333333
Q ss_pred --CCCcEEEEecCCCCCC----CCCh---hHHHhhhHHHHHHHHHHHHhhc-CCCcEEEEEeCChhhHHHHHHHHCCCCC
Q 019990 80 --KDVNIAVMVGGFPRKE----GMER---KDVMSKNVSIYKAQASALEKHA-APNCKVLVVANPANTNALILKEFAPSIP 149 (332)
Q Consensus 80 --~~aDiVi~~ag~~~~~----~~~~---~~~~~~N~~~~~~i~~~i~~~~-~~~~~viv~snp~~~~~~~~~~~~~~~~ 149 (332)
...|++||.||..... ..+. ...++.|+.....+.+++..+- ....++|++|+.... . +.+
T Consensus 79 ~~g~iD~lv~nAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~g~iv~isS~~~~-------~--~~~ 149 (270)
T 1yde_A 79 RFGRLDCVVNNAGHHPPPQRPEETSAQGFRQLLELNLLGTYTLTKLALPYLRKSQGNVINISSLVGA-------I--GQA 149 (270)
T ss_dssp HHSCCCEEEECCCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEECCHHHH-------H--CCT
T ss_pred HcCCCCEEEECCCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHCCCEEEEEcCcccc-------C--CCC
Confidence 3789999999874321 1122 2356778777766666664321 012577777753211 1 223
Q ss_pred CCcEEEeecccHHHHHHHHHHHcC
Q 019990 150 AKNITCLTRLDHNRAMGQISERLK 173 (332)
Q Consensus 150 ~~~i~~~t~l~~~r~~~~~a~~~~ 173 (332)
....|+.+|.....+.+.++..+.
T Consensus 150 ~~~~Y~asKaa~~~~~~~la~e~~ 173 (270)
T 1yde_A 150 QAVPYVATKGAVTAMTKALALDES 173 (270)
T ss_dssp TCHHHHHHHHHHHHHHHHHHHHHG
T ss_pred CCcccHHHHHHHHHHHHHHHHHhh
Confidence 334577788877788777877653
|
| >3rkr_A Short chain oxidoreductase; rossmann fold; HET: NAP; 2.42A {Uncultured bacterium BIO5} | Back alignment and structure |
|---|
Probab=98.63 E-value=4.2e-08 Score=86.92 Aligned_cols=152 Identities=15% Similarity=0.140 Sum_probs=91.2
Q ss_pred CCcEEEEEcCCChhHHHHHHHHHhcccCCCCCCeEEEEEecccchhhhhhhHhhhhhhc--c-CCccceEEeCCHHHHh-
Q 019990 4 NPLRVLVTGAAGQIGYALVPMIARGIMLGPDQPVILHMLDIEPAAEALNGVKMELIDAA--F-PLLKGVVATTDVVEAC- 79 (332)
Q Consensus 4 ~~~kI~VtGaaG~IGs~l~~~L~~~~~~~~~~~~~i~l~D~~~~~~~~~~~~~dl~~~~--~-~~~~~v~~~~~~~~a~- 79 (332)
+.++|+||||+|+||++++..|++.|. +|++.|++. +.+.....++.... . ....|++...++.+++
T Consensus 28 ~~k~vlITGas~gIG~~la~~l~~~G~-------~V~~~~r~~--~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~ 98 (262)
T 3rkr_A 28 SGQVAVVTGASRGIGAAIARKLGSLGA-------RVVLTARDV--EKLRAVEREIVAAGGEAESHACDLSHSDAIAAFAT 98 (262)
T ss_dssp TTCEEEESSTTSHHHHHHHHHHHHTTC-------EEEEEESCH--HHHHHHHHHHHHTTCEEEEEECCTTCHHHHHHHHH
T ss_pred CCCEEEEECCCChHHHHHHHHHHHCCC-------EEEEEECCH--HHHHHHHHHHHHhCCceeEEEecCCCHHHHHHHHH
Confidence 457899999999999999999999885 899999864 33433333332211 0 1123443333333333
Q ss_pred ------CCCcEEEEecCCCCCC----CCCh---hHHHhhhHHHHHHHHHHHHhhc--CCCcEEEEEeCChhhHHHHHHHH
Q 019990 80 ------KDVNIAVMVGGFPRKE----GMER---KDVMSKNVSIYKAQASALEKHA--APNCKVLVVANPANTNALILKEF 144 (332)
Q Consensus 80 ------~~aDiVi~~ag~~~~~----~~~~---~~~~~~N~~~~~~i~~~i~~~~--~~~~~viv~snp~~~~~~~~~~~ 144 (332)
...|+|||.||..... ..+. ...++.|+.....+.+.+..+- ...+++|++|+....
T Consensus 99 ~~~~~~g~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~~~g~iv~isS~~~~-------- 170 (262)
T 3rkr_A 99 GVLAAHGRCDVLVNNAGVGWFGGPLHTMKPAEWDALIAVNLKAPYLLLRAFAPAMIAAKRGHIINISSLAGK-------- 170 (262)
T ss_dssp HHHHHHSCCSEEEECCCCCCCSSCGGGSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHTTCCEEEEECSSCSS--------
T ss_pred HHHHhcCCCCEEEECCCccCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhCCCceEEEEechhhc--------
Confidence 3589999999973211 1222 2356677776666655543321 134577777764321
Q ss_pred CCCCCCCcEEEeecccHHHHHHHHHHHcC
Q 019990 145 APSIPAKNITCLTRLDHNRAMGQISERLK 173 (332)
Q Consensus 145 ~~~~~~~~i~~~t~l~~~r~~~~~a~~~~ 173 (332)
.+.+....|+.+|.....+...+++.+.
T Consensus 171 -~~~~~~~~Y~asKaa~~~l~~~la~e~~ 198 (262)
T 3rkr_A 171 -NPVADGAAYTASKWGLNGLMTSAAEELR 198 (262)
T ss_dssp -CCCTTCHHHHHHHHHHHHHHHHHHHHHG
T ss_pred -CCCCCCchHHHHHHHHHHHHHHHHHHhh
Confidence 1233334677788777788878887753
|
| >3oid_A Enoyl-[acyl-carrier-protein] reductase [NADPH]; fatty acid synthesis, enoyl-ACP reductases, FABL, rossmann-L NADPH binding, oxidoreductase; HET: TCL NDP; 1.80A {Bacillus subtilis} PDB: 3oic_A* | Back alignment and structure |
|---|
Probab=98.63 E-value=9e-08 Score=84.67 Aligned_cols=158 Identities=11% Similarity=0.034 Sum_probs=95.1
Q ss_pred CCcEEEEEcCCChhHHHHHHHHHhcccCCCCCCeEEEEE-ecccchhhhhhhHhhhhhhcc---CCccceEEeCCHHHHh
Q 019990 4 NPLRVLVTGAAGQIGYALVPMIARGIMLGPDQPVILHML-DIEPAAEALNGVKMELIDAAF---PLLKGVVATTDVVEAC 79 (332)
Q Consensus 4 ~~~kI~VtGaaG~IGs~l~~~L~~~~~~~~~~~~~i~l~-D~~~~~~~~~~~~~dl~~~~~---~~~~~v~~~~~~~~a~ 79 (332)
+.++++||||+|+||++++..|++.|. ++++. +++. +.+.....++..... ....|++...++.+.+
T Consensus 3 ~~k~vlVTGas~gIG~aia~~l~~~G~-------~vv~~~~r~~--~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~ 73 (258)
T 3oid_A 3 QNKCALVTGSSRGVGKAAAIRLAENGY-------NIVINYARSK--KAALETAEEIEKLGVKVLVVKANVGQPAKIKEMF 73 (258)
T ss_dssp CCCEEEESSCSSHHHHHHHHHHHHTTC-------EEEEEESSCH--HHHHHHHHHHHTTTCCEEEEECCTTCHHHHHHHH
T ss_pred CCCEEEEecCCchHHHHHHHHHHHCCC-------EEEEEcCCCH--HHHHHHHHHHHhcCCcEEEEEcCCCCHHHHHHHH
Confidence 457899999999999999999999886 77776 5542 233333333332111 1123444333333333
Q ss_pred -------CCCcEEEEecCCCCCC---CCChh---HHHhhhHHHHHHHHHHHHhhc--CCCcEEEEEeCChhhHHHHHHHH
Q 019990 80 -------KDVNIAVMVGGFPRKE---GMERK---DVMSKNVSIYKAQASALEKHA--APNCKVLVVANPANTNALILKEF 144 (332)
Q Consensus 80 -------~~aDiVi~~ag~~~~~---~~~~~---~~~~~N~~~~~~i~~~i~~~~--~~~~~viv~snp~~~~~~~~~~~ 144 (332)
...|++|+.||..... ..+.+ ..++.|+.....+.+++..+- ...+++|++|+....
T Consensus 74 ~~~~~~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~~~~m~~~~~g~iv~isS~~~~-------- 145 (258)
T 3oid_A 74 QQIDETFGRLDVFVNNAASGVLRPVMELEETHWDWTMNINAKALLFCAQEAAKLMEKNGGGHIVSISSLGSI-------- 145 (258)
T ss_dssp HHHHHHHSCCCEEEECCCCCCCSCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHTTTCEEEEEEEEGGGT--------
T ss_pred HHHHHHcCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCcEEEEECchhhC--------
Confidence 3569999999864321 12222 346778777666666553321 124577777753221
Q ss_pred CCCCCCCcEEEeecccHHHHHHHHHHHcCCCCCCeee
Q 019990 145 APSIPAKNITCLTRLDHNRAMGQISERLKVHVSDVKN 181 (332)
Q Consensus 145 ~~~~~~~~i~~~t~l~~~r~~~~~a~~~~v~~~~v~~ 181 (332)
.+.+....|+.+|.....+.+.++..++ +..|+.
T Consensus 146 -~~~~~~~~Y~asKaa~~~l~~~la~e~~--~~gi~v 179 (258)
T 3oid_A 146 -RYLENYTTVGVSKAALEALTRYLAVELS--PKQIIV 179 (258)
T ss_dssp -SBCTTCHHHHHHHHHHHHHHHHHHHHTG--GGTEEE
T ss_pred -CCCCCcHHHHHHHHHHHHHHHHHHHHHh--hcCcEE
Confidence 2234444678888888888888888874 455664
|
| >2x9g_A PTR1, pteridine reductase; short chain dehydrogenase, oxidoreductase; HET: NAP LYA; 1.10A {Trypanosoma brucei brucei} PDB: 2x9n_A* 2x9v_A* 3bmc_A* 3bmd_A* 3bme_A* 3bmf_A* 3bmg_A* 3bmh_A* 3bmi_A* 3bmj_A* 3bmk_A* 3bml_A* 3bmm_A* 3bmn_A* 3bmo_A* 3bmq_A* 3bmr_A* 3gn1_A* 3gn2_A* 3jq6_A* ... | Back alignment and structure |
|---|
Probab=98.63 E-value=5.3e-08 Score=87.51 Aligned_cols=159 Identities=12% Similarity=0.048 Sum_probs=93.9
Q ss_pred CCcEEEEEcCCChhHHHHHHHHHhcccCCCCCCeEEEEEecccchhhhhhhHhhhh-hh--c-cCCccceEE----eCCH
Q 019990 4 NPLRVLVTGAAGQIGYALVPMIARGIMLGPDQPVILHMLDIEPAAEALNGVKMELI-DA--A-FPLLKGVVA----TTDV 75 (332)
Q Consensus 4 ~~~kI~VtGaaG~IGs~l~~~L~~~~~~~~~~~~~i~l~D~~~~~~~~~~~~~dl~-~~--~-~~~~~~v~~----~~~~ 75 (332)
+.++++||||+|+||.+++..|++.|. +|+++|++.. +.+.....++. .. . .....|++. ..++
T Consensus 22 ~~k~~lVTGas~gIG~aia~~L~~~G~-------~V~~~~r~~~-~~~~~~~~~l~~~~~~~~~~~~~Dv~~~~~~~~~v 93 (288)
T 2x9g_A 22 EAPAAVVTGAAKRIGRAIAVKLHQTGY-------RVVIHYHNSA-EAAVSLADELNKERSNTAVVCQADLTNSNVLPASC 93 (288)
T ss_dssp CCCEEEETTCSSHHHHHHHHHHHHHTC-------EEEEEESSCH-HHHHHHHHHHHHHSTTCEEEEECCCSCSTTHHHHH
T ss_pred CCCEEEEeCCCCHHHHHHHHHHHHCCC-------eEEEEeCCch-HHHHHHHHHHHhhcCCceEEEEeecCCccCCHHHH
Confidence 346899999999999999999999885 8999998641 22332222332 10 0 011234444 3333
Q ss_pred HHHh-------CCCcEEEEecCCCCCC--------C-----CCh---hHHHhhhHHHHHHHHHHHHhhcCC--------C
Q 019990 76 VEAC-------KDVNIAVMVGGFPRKE--------G-----MER---KDVMSKNVSIYKAQASALEKHAAP--------N 124 (332)
Q Consensus 76 ~~a~-------~~aDiVi~~ag~~~~~--------~-----~~~---~~~~~~N~~~~~~i~~~i~~~~~~--------~ 124 (332)
.+++ ...|++|+.||..... . .+. ...+..|+.....+.+.+..+... .
T Consensus 94 ~~~~~~~~~~~g~iD~lvnnAG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~~~~~~~ 173 (288)
T 2x9g_A 94 EEIINSCFRAFGRCDVLVNNASAFYPTPLVQGDHEDNSNGKTVETQVAELIGTNAIAPFLLTMSFAQRQKGTNPNCTSSN 173 (288)
T ss_dssp HHHHHHHHHHHSCCCEEEECCCCCCCCCSCCC--------CCHHHHHHHHHHHHTHHHHHHHHHHHHHC--------CCC
T ss_pred HHHHHHHHHhcCCCCEEEECCCCCCCCccccccchhcccccCCHHHHHHHHHHhhHHHHHHHHHHHHHHhhcCCCCCCCC
Confidence 3333 3789999999974321 1 111 134567777666666665544211 3
Q ss_pred cEEEEEeCChhhHHHHHHHHCCCCCCCcEEEeecccHHHHHHHHHHHcCCCCCCeee
Q 019990 125 CKVLVVANPANTNALILKEFAPSIPAKNITCLTRLDHNRAMGQISERLKVHVSDVKN 181 (332)
Q Consensus 125 ~~viv~snp~~~~~~~~~~~~~~~~~~~i~~~t~l~~~r~~~~~a~~~~v~~~~v~~ 181 (332)
.++|++|+.... .+.+....|+.+|.....+.+.++..+. +..|+.
T Consensus 174 g~iv~isS~~~~---------~~~~~~~~Y~asKaa~~~l~~~la~e~~--~~gI~v 219 (288)
T 2x9g_A 174 LSIVNLCDAMVD---------QPCMAFSLYNMGKHALVGLTQSAALELA--PYGIRV 219 (288)
T ss_dssp EEEEEECCTTTT---------SCCTTCHHHHHHHHHHHHHHHHHHHHHG--GGTEEE
T ss_pred eEEEEEeccccc---------CCCCCCchHHHHHHHHHHHHHHHHHHhh--ccCeEE
Confidence 577777754221 1233344677788877778888888764 345664
|
| >2ggs_A 273AA long hypothetical DTDP-4-dehydrorhamnose reductase; alpha, beta, oxidoreductase; HET: NDP; 1.70A {Sulfolobus tokodaii} | Back alignment and structure |
|---|
Probab=98.62 E-value=1.9e-08 Score=89.15 Aligned_cols=150 Identities=13% Similarity=0.073 Sum_probs=90.8
Q ss_pred cEEEEEcCCChhHHHHHHHHHhcccCCCCCCeEEEEEecccchhhhhhhHhhhhhhccCCccceEEeCCHHHHhCC--Cc
Q 019990 6 LRVLVTGAAGQIGYALVPMIARGIMLGPDQPVILHMLDIEPAAEALNGVKMELIDAAFPLLKGVVATTDVVEACKD--VN 83 (332)
Q Consensus 6 ~kI~VtGaaG~IGs~l~~~L~~~~~~~~~~~~~i~l~D~~~~~~~~~~~~~dl~~~~~~~~~~v~~~~~~~~a~~~--aD 83 (332)
|||+||||+|+||++++..|++ +. +|++++++... . .. ...|+....++.+++++ +|
T Consensus 1 m~ilVtGatG~iG~~l~~~L~~-g~-------~V~~~~r~~~~---~------~~----~~~Dl~~~~~~~~~~~~~~~d 59 (273)
T 2ggs_A 1 MRTLITGASGQLGIELSRLLSE-RH-------EVIKVYNSSEI---Q------GG----YKLDLTDFPRLEDFIIKKRPD 59 (273)
T ss_dssp CCEEEETTTSHHHHHHHHHHTT-TS-------CEEEEESSSCC---T------TC----EECCTTSHHHHHHHHHHHCCS
T ss_pred CEEEEECCCChhHHHHHHHHhc-CC-------eEEEecCCCcC---C------CC----ceeccCCHHHHHHHHHhcCCC
Confidence 4799999999999999999985 54 78888875421 1 00 11233333345556665 99
Q ss_pred EEEEecCCCCCC--CCChhHHHhhhHHHHHHHHHHHHhhcCCCcEEEEEeCChhhHH--HHHHHHCCCCCCCcEEEeecc
Q 019990 84 IAVMVGGFPRKE--GMERKDVMSKNVSIYKAQASALEKHAAPNCKVLVVANPANTNA--LILKEFAPSIPAKNITCLTRL 159 (332)
Q Consensus 84 iVi~~ag~~~~~--~~~~~~~~~~N~~~~~~i~~~i~~~~~~~~~viv~snp~~~~~--~~~~~~~~~~~~~~i~~~t~l 159 (332)
+|||+||..... ..+..+.+..|+....++++++.+.+ +++|++|+..-... ..+.+. ....+...|+.+|.
T Consensus 60 ~vi~~a~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~---~~iv~~SS~~~~~~~~~~~~e~-~~~~~~~~Y~~sK~ 135 (273)
T 2ggs_A 60 VIINAAAMTDVDKCEIEKEKAYKINAEAVRHIVRAGKVID---SYIVHISTDYVFDGEKGNYKEE-DIPNPINYYGLSKL 135 (273)
T ss_dssp EEEECCCCCCHHHHHHCHHHHHHHHTHHHHHHHHHHHHTT---CEEEEEEEGGGSCSSSCSBCTT-SCCCCSSHHHHHHH
T ss_pred EEEECCcccChhhhhhCHHHHHHHhHHHHHHHHHHHHHhC---CeEEEEecceeEcCCCCCcCCC-CCCCCCCHHHHHHH
Confidence 999999864311 11234567889999999999998763 37777765321000 000010 11122334566665
Q ss_pred cHHHHHHHHHHHcCCCCCCeeeeEEEe
Q 019990 160 DHNRAMGQISERLKVHVSDVKNVIIWG 186 (332)
Q Consensus 160 ~~~r~~~~~a~~~~v~~~~v~~~~V~G 186 (332)
..+++... ++...+|...|+|
T Consensus 136 ~~e~~~~~------~~~~~iR~~~v~G 156 (273)
T 2ggs_A 136 LGETFALQ------DDSLIIRTSGIFR 156 (273)
T ss_dssp HHHHHHCC------TTCEEEEECCCBS
T ss_pred HHHHHHhC------CCeEEEecccccc
Confidence 55444322 5566788777787
|
| >3i1j_A Oxidoreductase, short chain dehydrogenase/reducta; dimer, MIXE beta, structural genomics, PSI-2; 1.90A {Pseudomonas syringae PV} SCOP: c.2.1.0 | Back alignment and structure |
|---|
Probab=98.62 E-value=2.3e-07 Score=81.12 Aligned_cols=159 Identities=16% Similarity=0.144 Sum_probs=94.7
Q ss_pred CCcEEEEEcCCChhHHHHHHHHHhcccCCCCCCeEEEEEecccchhhhhhhHhhhhhhccC----Cccce--EEeCCHHH
Q 019990 4 NPLRVLVTGAAGQIGYALVPMIARGIMLGPDQPVILHMLDIEPAAEALNGVKMELIDAAFP----LLKGV--VATTDVVE 77 (332)
Q Consensus 4 ~~~kI~VtGaaG~IGs~l~~~L~~~~~~~~~~~~~i~l~D~~~~~~~~~~~~~dl~~~~~~----~~~~v--~~~~~~~~ 77 (332)
+.++++||||+|+||++++..|++.|. +|+++|++. +.+.....++...... ...++ ....++.+
T Consensus 13 ~~k~vlITGas~gIG~~ia~~l~~~G~-------~V~~~~r~~--~~~~~~~~~~~~~~~~~~~~~~~d~d~~~~~~~~~ 83 (247)
T 3i1j_A 13 KGRVILVTGAARGIGAAAARAYAAHGA-------SVVLLGRTE--ASLAEVSDQIKSAGQPQPLIIALNLENATAQQYRE 83 (247)
T ss_dssp TTCEEEESSTTSHHHHHHHHHHHHTTC-------EEEEEESCH--HHHHHHHHHHHHTTSCCCEEEECCTTTCCHHHHHH
T ss_pred CCCEEEEeCCCChHHHHHHHHHHHCCC-------EEEEEecCH--HHHHHHHHHHHhcCCCCceEEEeccccCCHHHHHH
Confidence 346899999999999999999999886 899999864 2333333333221100 01122 22222222
Q ss_pred H-------hCCCcEEEEecCCCCCC----CCCh---hHHHhhhHHHHHHHHHHHHhhc--CCCcEEEEEeCChhhHHHHH
Q 019990 78 A-------CKDVNIAVMVGGFPRKE----GMER---KDVMSKNVSIYKAQASALEKHA--APNCKVLVVANPANTNALIL 141 (332)
Q Consensus 78 a-------~~~aDiVi~~ag~~~~~----~~~~---~~~~~~N~~~~~~i~~~i~~~~--~~~~~viv~snp~~~~~~~~ 141 (332)
. +...|++||.||..... ..+. ...++.|+.....+.+.+..+- ....+++++|+....
T Consensus 84 ~~~~~~~~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~~~iv~isS~~~~----- 158 (247)
T 3i1j_A 84 LAARVEHEFGRLDGLLHNASIIGPRTPLEQLPDEDFMQVMHVNVNATFMLTRALLPLLKRSEDASIAFTSSSVGR----- 158 (247)
T ss_dssp HHHHHHHHHSCCSEEEECCCCCCCCSCGGGSCHHHHHHHHHHHTHHHHHHHHHHHHHHTTSSSEEEEEECCGGGT-----
T ss_pred HHHHHHHhCCCCCEEEECCccCCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhCCCCeEEEEcchhhc-----
Confidence 2 23789999999974211 1122 2356778777766666653321 124577777754321
Q ss_pred HHHCCCCCCCcEEEeecccHHHHHHHHHHHcCCCCCCeee
Q 019990 142 KEFAPSIPAKNITCLTRLDHNRAMGQISERLKVHVSDVKN 181 (332)
Q Consensus 142 ~~~~~~~~~~~i~~~t~l~~~r~~~~~a~~~~v~~~~v~~ 181 (332)
.+.+....|+.+|.....+.+.++..+. ....|+.
T Consensus 159 ----~~~~~~~~Y~~sK~a~~~~~~~la~e~~-~~~~i~v 193 (247)
T 3i1j_A 159 ----KGRANWGAYGVSKFATEGLMQTLADELE-GVTAVRA 193 (247)
T ss_dssp ----SCCTTCHHHHHHHHHHHHHHHHHHHHHT-TTSSEEE
T ss_pred ----CCCCCcchhHHHHHHHHHHHHHHHHHhc-CCCCeEE
Confidence 2233344678888888888888888874 2245664
|
| >3f1l_A Uncharacterized oxidoreductase YCIK; E. coli, NADP+,; 0.95A {Escherichia coli K12} SCOP: c.2.1.0 PDB: 3f1k_A 3e9q_A* 3f5q_A 3gz4_A* 3f5s_A 3gy0_A* 3iah_A* 3g1t_A | Back alignment and structure |
|---|
Probab=98.62 E-value=3.6e-07 Score=80.40 Aligned_cols=161 Identities=14% Similarity=0.110 Sum_probs=97.2
Q ss_pred CcEEEEEcCCChhHHHHHHHHHhcccCCCCCCeEEEEEecccchhhhhhhHhhhhhhcc----CCccce--EEeCCHHHH
Q 019990 5 PLRVLVTGAAGQIGYALVPMIARGIMLGPDQPVILHMLDIEPAAEALNGVKMELIDAAF----PLLKGV--VATTDVVEA 78 (332)
Q Consensus 5 ~~kI~VtGaaG~IGs~l~~~L~~~~~~~~~~~~~i~l~D~~~~~~~~~~~~~dl~~~~~----~~~~~v--~~~~~~~~a 78 (332)
.++++||||+|+||++++..|++.|. +|++.|++. +.+.....++..... ....|+ ....+..+.
T Consensus 12 ~k~vlVTGas~gIG~aia~~l~~~G~-------~V~~~~r~~--~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~ 82 (252)
T 3f1l_A 12 DRIILVTGASDGIGREAAMTYARYGA-------TVILLGRNE--EKLRQVASHINEETGRQPQWFILDLLTCTSENCQQL 82 (252)
T ss_dssp TCEEEEESTTSHHHHHHHHHHHHTTC-------EEEEEESCH--HHHHHHHHHHHHHHSCCCEEEECCTTTCCHHHHHHH
T ss_pred CCEEEEeCCCChHHHHHHHHHHHCCC-------EEEEEeCCH--HHHHHHHHHHHhhcCCCceEEEEecccCCHHHHHHH
Confidence 46899999999999999999999885 899999864 333333333322110 111233 222222332
Q ss_pred h-------CCCcEEEEecCCCCC--C--CCChh---HHHhhhHHHHHHHHHHHHhhc--CCCcEEEEEeCChhhHHHHHH
Q 019990 79 C-------KDVNIAVMVGGFPRK--E--GMERK---DVMSKNVSIYKAQASALEKHA--APNCKVLVVANPANTNALILK 142 (332)
Q Consensus 79 ~-------~~aDiVi~~ag~~~~--~--~~~~~---~~~~~N~~~~~~i~~~i~~~~--~~~~~viv~snp~~~~~~~~~ 142 (332)
+ ...|++|+.||.... + ..+.+ ..++.|+.....+.+++..+- ...+++|++|+....
T Consensus 83 ~~~~~~~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~m~~~~~g~iv~isS~~~~------ 156 (252)
T 3f1l_A 83 AQRIAVNYPRLDGVLHNAGLLGDVCPMSEQNPQVWQDVMQVNVNATFMLTQALLPLLLKSDAGSLVFTSSSVGR------ 156 (252)
T ss_dssp HHHHHHHCSCCSEEEECCCCCCCCSCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHTSSSCEEEEECCGGGT------
T ss_pred HHHHHHhCCCCCEEEECCccCCCCCCcccCCHHHHHHHHhhhhHHHHHHHHHHHHHHHHCCCCEEEEECChhhc------
Confidence 2 378999999997321 1 22322 356778777766666553221 134577777764321
Q ss_pred HHCCCCCCCcEEEeecccHHHHHHHHHHHcCCCCCCeeeeEEEec
Q 019990 143 EFAPSIPAKNITCLTRLDHNRAMGQISERLKVHVSDVKNVIIWGN 187 (332)
Q Consensus 143 ~~~~~~~~~~i~~~t~l~~~r~~~~~a~~~~v~~~~v~~~~V~G~ 187 (332)
.+.+....|+.+|.....+.+.+++.++ +. ||. +.+.+
T Consensus 157 ---~~~~~~~~Y~asK~a~~~l~~~la~e~~--~~-irv-n~v~P 194 (252)
T 3f1l_A 157 ---QGRANWGAYAASKFATEGMMQVLADEYQ--QR-LRV-NCINP 194 (252)
T ss_dssp ---SCCTTCHHHHHHHHHHHHHHHHHHHHTT--TT-CEE-EEEEC
T ss_pred ---cCCCCCchhHHHHHHHHHHHHHHHHHhc--CC-cEE-EEEec
Confidence 2233344678888888888888999886 33 764 33443
|
| >1geg_A Acetoin reductase; SDR family, oxidoreductase; HET: GLC NAD; 1.70A {Klebsiella pneumoniae} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=98.62 E-value=2.4e-08 Score=88.21 Aligned_cols=155 Identities=17% Similarity=0.168 Sum_probs=91.4
Q ss_pred cEEEEEcCCChhHHHHHHHHHhcccCCCCCCeEEEEEecccchhhhhhhHhhhhhhc--c-CCccceEEeCCHHHHhC--
Q 019990 6 LRVLVTGAAGQIGYALVPMIARGIMLGPDQPVILHMLDIEPAAEALNGVKMELIDAA--F-PLLKGVVATTDVVEACK-- 80 (332)
Q Consensus 6 ~kI~VtGaaG~IGs~l~~~L~~~~~~~~~~~~~i~l~D~~~~~~~~~~~~~dl~~~~--~-~~~~~v~~~~~~~~a~~-- 80 (332)
++++||||+|+||++++..|++.|. +|++.|++. +.+.....++.... . ....|++...++.++++
T Consensus 3 k~vlVTGas~gIG~~ia~~l~~~G~-------~V~~~~r~~--~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~ 73 (256)
T 1geg_A 3 KVALVTGAGQGIGKAIALRLVKDGF-------AVAIADYND--ATAKAVASEINQAGGHAVAVKVDVSDRDQVFAAVEQA 73 (256)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTC-------EEEEEESCH--HHHHHHHHHHHHTTCCEEEEECCTTSHHHHHHHHHHH
T ss_pred CEEEEECCCChHHHHHHHHHHHCCC-------EEEEEeCCH--HHHHHHHHHHHhcCCcEEEEEecCCCHHHHHHHHHHH
Confidence 5799999999999999999999885 899999853 23332223332211 0 11234433333444443
Q ss_pred -----CCcEEEEecCCCCCC---CCChh---HHHhhhHHHHHHHHH----HHHhhcCCCcEEEEEeCChhhHHHHHHHHC
Q 019990 81 -----DVNIAVMVGGFPRKE---GMERK---DVMSKNVSIYKAQAS----ALEKHAAPNCKVLVVANPANTNALILKEFA 145 (332)
Q Consensus 81 -----~aDiVi~~ag~~~~~---~~~~~---~~~~~N~~~~~~i~~----~i~~~~~~~~~viv~snp~~~~~~~~~~~~ 145 (332)
+.|++|+.||..... ..+.+ ..+..|+.....+.+ .+++.+ ...++|++|+....
T Consensus 74 ~~~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~-~~g~iv~isS~~~~--------- 143 (256)
T 1geg_A 74 RKTLGGFDVIVNNAGVAPSTPIESITPEIVDKVYNINVKGVIWGIQAAVEAFKKEG-HGGKIINACSQAGH--------- 143 (256)
T ss_dssp HHHTTCCCEEEECCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHT-SCEEEEEECCGGGT---------
T ss_pred HHHhCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcC-CCCEEEEECchhhc---------
Confidence 799999999874321 11222 346677765544444 444332 13577777754321
Q ss_pred CCCCCCcEEEeecccHHHHHHHHHHHcCCCCCCeee
Q 019990 146 PSIPAKNITCLTRLDHNRAMGQISERLKVHVSDVKN 181 (332)
Q Consensus 146 ~~~~~~~i~~~t~l~~~r~~~~~a~~~~v~~~~v~~ 181 (332)
.+.+....|+.+|.....+.+.++..+. +..|+.
T Consensus 144 ~~~~~~~~Y~asK~a~~~~~~~la~e~~--~~gi~v 177 (256)
T 1geg_A 144 VGNPELAVYSSSKFAVRGLTQTAARDLA--PLGITV 177 (256)
T ss_dssp SCCTTBHHHHHHHHHHHHHHHHHHHHHG--GGTEEE
T ss_pred CCCCCchhHHHHHHHHHHHHHHHHHHHH--HcCeEE
Confidence 1233333567778777778888887764 345653
|
| >3r1i_A Short-chain type dehydrogenase/reductase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 1.95A {Mycobacterium marinum} | Back alignment and structure |
|---|
Probab=98.61 E-value=1.1e-07 Score=85.11 Aligned_cols=158 Identities=18% Similarity=0.184 Sum_probs=95.8
Q ss_pred CCcEEEEEcCCChhHHHHHHHHHhcccCCCCCCeEEEEEecccchhhhhhhHhhhhhhcc---CCccceEEeCCHHHHhC
Q 019990 4 NPLRVLVTGAAGQIGYALVPMIARGIMLGPDQPVILHMLDIEPAAEALNGVKMELIDAAF---PLLKGVVATTDVVEACK 80 (332)
Q Consensus 4 ~~~kI~VtGaaG~IGs~l~~~L~~~~~~~~~~~~~i~l~D~~~~~~~~~~~~~dl~~~~~---~~~~~v~~~~~~~~a~~ 80 (332)
+.++++||||+|+||++++..|++.|. +|++.|++. +.+.....++..... ....|++...++.+.++
T Consensus 31 ~gk~~lVTGas~GIG~aia~~la~~G~-------~V~~~~r~~--~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~v~~~~~ 101 (276)
T 3r1i_A 31 SGKRALITGASTGIGKKVALAYAEAGA-------QVAVAARHS--DALQVVADEIAGVGGKALPIRCDVTQPDQVRGMLD 101 (276)
T ss_dssp TTCEEEEESTTSHHHHHHHHHHHHTTC-------EEEEEESSG--GGGHHHHHHHHHTTCCCEEEECCTTCHHHHHHHHH
T ss_pred CCCEEEEeCCCCHHHHHHHHHHHHCCC-------EEEEEeCCH--HHHHHHHHHHHhcCCeEEEEEcCCCCHHHHHHHHH
Confidence 457899999999999999999999885 899999864 334433334432111 11234444444444443
Q ss_pred -------CCcEEEEecCCCCCC---CCChh---HHHhhhHHHHHHHHHHHH----hhcCCCcEEEEEeCChhhHHHHHHH
Q 019990 81 -------DVNIAVMVGGFPRKE---GMERK---DVMSKNVSIYKAQASALE----KHAAPNCKVLVVANPANTNALILKE 143 (332)
Q Consensus 81 -------~aDiVi~~ag~~~~~---~~~~~---~~~~~N~~~~~~i~~~i~----~~~~~~~~viv~snp~~~~~~~~~~ 143 (332)
..|++|+.||..... ..+.+ ..++.|+.....+.+++. +.. ..+++|++++.....
T Consensus 102 ~~~~~~g~iD~lvnnAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~m~~~~-~~g~iv~isS~~~~~------ 174 (276)
T 3r1i_A 102 QMTGELGGIDIAVCNAGIVSVQAMLDMPLEEFQRIQDTNVTGVFLTAQAAARAMVDQG-LGGTIITTASMSGHI------ 174 (276)
T ss_dssp HHHHHHSCCSEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHT-SCEEEEEECCGGGTS------
T ss_pred HHHHHcCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC-CCcEEEEECchHhcc------
Confidence 789999999975321 12222 245677766655555543 332 235677776533210
Q ss_pred HCCCCC-CCcEEEeecccHHHHHHHHHHHcCCCCCCeee
Q 019990 144 FAPSIP-AKNITCLTRLDHNRAMGQISERLKVHVSDVKN 181 (332)
Q Consensus 144 ~~~~~~-~~~i~~~t~l~~~r~~~~~a~~~~v~~~~v~~ 181 (332)
...+ ....|+.+|.....+.+.+++.++ +..|+.
T Consensus 175 --~~~~~~~~~Y~asKaa~~~l~~~la~e~~--~~gIrv 209 (276)
T 3r1i_A 175 --INIPQQVSHYCTSKAAVVHLTKAMAVELA--PHQIRV 209 (276)
T ss_dssp --CCCSSCCHHHHHHHHHHHHHHHHHHHHHG--GGTEEE
T ss_pred --cCCCCCcchHHHHHHHHHHHHHHHHHHHh--hcCcEE
Confidence 1122 223578888888888888888865 345664
|
| >3lf2_A Short chain oxidoreductase Q9HYA2; SDR, SCOR, rossmann fold; HET: NAP; 2.30A {Pseudomonas aeruginosa} PDB: 3lf1_A* | Back alignment and structure |
|---|
Probab=98.61 E-value=8.4e-08 Score=85.14 Aligned_cols=158 Identities=15% Similarity=0.122 Sum_probs=96.9
Q ss_pred CCcEEEEEcCCChhHHHHHHHHHhcccCCCCCCeEEEEEecccchhhhhhhHhhhhhh-----ccCCccceEEeCCHHHH
Q 019990 4 NPLRVLVTGAAGQIGYALVPMIARGIMLGPDQPVILHMLDIEPAAEALNGVKMELIDA-----AFPLLKGVVATTDVVEA 78 (332)
Q Consensus 4 ~~~kI~VtGaaG~IGs~l~~~L~~~~~~~~~~~~~i~l~D~~~~~~~~~~~~~dl~~~-----~~~~~~~v~~~~~~~~a 78 (332)
+.++++||||+|.||.+++..|++.|. +|++.|++. +.+.....++... ......|++...++.+.
T Consensus 7 ~~k~~lVTGas~GIG~aia~~l~~~G~-------~V~~~~r~~--~~~~~~~~~l~~~~~~~~~~~~~~Dv~~~~~v~~~ 77 (265)
T 3lf2_A 7 SEAVAVVTGGSSGIGLATVELLLEAGA-------AVAFCARDG--ERLRAAESALRQRFPGARLFASVCDVLDALQVRAF 77 (265)
T ss_dssp TTCEEEEETCSSHHHHHHHHHHHHTTC-------EEEEEESCH--HHHHHHHHHHHHHSTTCCEEEEECCTTCHHHHHHH
T ss_pred CCCEEEEeCCCChHHHHHHHHHHHCCC-------EEEEEeCCH--HHHHHHHHHHHHhcCCceEEEEeCCCCCHHHHHHH
Confidence 457899999999999999999999885 899999864 3343333334321 00112344333333332
Q ss_pred -------hCCCcEEEEecCCCCCC---CCChh---HHHhhhHHHHHHHHHHHHhhc--CCCcEEEEEeCChhhHHHHHHH
Q 019990 79 -------CKDVNIAVMVGGFPRKE---GMERK---DVMSKNVSIYKAQASALEKHA--APNCKVLVVANPANTNALILKE 143 (332)
Q Consensus 79 -------~~~aDiVi~~ag~~~~~---~~~~~---~~~~~N~~~~~~i~~~i~~~~--~~~~~viv~snp~~~~~~~~~~ 143 (332)
+...|++|+.||..... ..+.+ ..++.|+.....+.+++..+- ...+++|++|+....
T Consensus 78 ~~~~~~~~g~id~lvnnAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~g~iv~isS~~~~------- 150 (265)
T 3lf2_A 78 AEACERTLGCASILVNNAGQGRVSTFAETTDEAWSEELQLKFFSVIHPVRAFLPQLESRADAAIVCVNSLLAS------- 150 (265)
T ss_dssp HHHHHHHHCSCSEEEECCCCCCCBCTTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHTTSTTEEEEEEEEGGGT-------
T ss_pred HHHHHHHcCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCeEEEEECCcccC-------
Confidence 23689999999974321 22222 356778877777766664432 124577777754321
Q ss_pred HCCCCCCCcEEEeecccHHHHHHHHHHHcCCCCCCeee
Q 019990 144 FAPSIPAKNITCLTRLDHNRAMGQISERLKVHVSDVKN 181 (332)
Q Consensus 144 ~~~~~~~~~i~~~t~l~~~r~~~~~a~~~~v~~~~v~~ 181 (332)
.+.+....|+.+|.....+.+.++..++ +..|+.
T Consensus 151 --~~~~~~~~Y~asKaa~~~l~~~la~e~~--~~gi~v 184 (265)
T 3lf2_A 151 --QPEPHMVATSAARAGVKNLVRSMAFEFA--PKGVRV 184 (265)
T ss_dssp --SCCTTBHHHHHHHHHHHHHHHHHHHHHG--GGTEEE
T ss_pred --CCCCCchhhHHHHHHHHHHHHHHHHHhc--ccCeEE
Confidence 1233334577778777788888888764 345664
|
| >2jah_A Clavulanic acid dehydrogenase; short-chain dehydrogenase/reductase, lactamase inhibitor, AN biosynthesis, NADPH, oxidoreductase; HET: MSE NDP; 1.80A {Streptomyces clavuligerus} PDB: 2jap_A* | Back alignment and structure |
|---|
Probab=98.61 E-value=6.8e-08 Score=84.82 Aligned_cols=158 Identities=18% Similarity=0.132 Sum_probs=93.0
Q ss_pred CCcEEEEEcCCChhHHHHHHHHHhcccCCCCCCeEEEEEecccchhhhhhhHhhhhhhc--c-CCccceEEeCCHHHHh-
Q 019990 4 NPLRVLVTGAAGQIGYALVPMIARGIMLGPDQPVILHMLDIEPAAEALNGVKMELIDAA--F-PLLKGVVATTDVVEAC- 79 (332)
Q Consensus 4 ~~~kI~VtGaaG~IGs~l~~~L~~~~~~~~~~~~~i~l~D~~~~~~~~~~~~~dl~~~~--~-~~~~~v~~~~~~~~a~- 79 (332)
+.++++||||+|+||.+++..|++.|. +|++.|++. +.+.....++.... . ....|++...++.+++
T Consensus 6 ~~k~~lVTGas~gIG~aia~~l~~~G~-------~V~~~~r~~--~~~~~~~~~l~~~~~~~~~~~~Dv~~~~~~~~~~~ 76 (247)
T 2jah_A 6 QGKVALITGASSGIGEATARALAAEGA-------AVAIAARRV--EKLRALGDELTAAGAKVHVLELDVADRQGVDAAVA 76 (247)
T ss_dssp TTCEEEEESCSSHHHHHHHHHHHHTTC-------EEEEEESCH--HHHHHHHHHHHHTTCCEEEEECCTTCHHHHHHHHH
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHCCC-------EEEEEECCH--HHHHHHHHHHHhcCCcEEEEECCCCCHHHHHHHHH
Confidence 346899999999999999999999885 899999853 23333333332211 0 1123443333333333
Q ss_pred ------CCCcEEEEecCCCCCC---CCChh---HHHhhhHHHHHHHHHHHHhhcC-CCcEEEEEeCChhhHHHHHHHHCC
Q 019990 80 ------KDVNIAVMVGGFPRKE---GMERK---DVMSKNVSIYKAQASALEKHAA-PNCKVLVVANPANTNALILKEFAP 146 (332)
Q Consensus 80 ------~~aDiVi~~ag~~~~~---~~~~~---~~~~~N~~~~~~i~~~i~~~~~-~~~~viv~snp~~~~~~~~~~~~~ 146 (332)
...|++|+.||..... ..+.+ ..+..|+.....+.+++..+-. ..+++|++|+.... .
T Consensus 77 ~~~~~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~g~iv~isS~~~~---------~ 147 (247)
T 2jah_A 77 STVEALGGLDILVNNAGIMLLGPVEDADTTDWTRMIDTNLLGLMYMTRAALPHLLRSKGTVVQMSSIAGR---------V 147 (247)
T ss_dssp HHHHHHSCCSEEEECCCCCCCCCSTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEECCGGGT---------C
T ss_pred HHHHHcCCCCEEEECCCCCCCCchhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHCCCEEEEEccHHhc---------C
Confidence 3789999999974321 12222 3567787777666665543210 01577777763221 1
Q ss_pred CCCCCcEEEeecccHHHHHHHHHHHcCCCCCCeee
Q 019990 147 SIPAKNITCLTRLDHNRAMGQISERLKVHVSDVKN 181 (332)
Q Consensus 147 ~~~~~~i~~~t~l~~~r~~~~~a~~~~v~~~~v~~ 181 (332)
+.+....|+.+|.....+.+.+++.+. +..|+.
T Consensus 148 ~~~~~~~Y~asK~a~~~~~~~la~e~~--~~gi~v 180 (247)
T 2jah_A 148 NVRNAAVYQATKFGVNAFSETLRQEVT--ERGVRV 180 (247)
T ss_dssp CCTTCHHHHHHHHHHHHHHHHHHHHHG--GGTCEE
T ss_pred CCCCCcHHHHHHHHHHHHHHHHHHHhc--ccCcEE
Confidence 233334567777777777777777764 334553
|
| >3nrc_A Enoyl-[acyl-carrier-protein] reductase (NADH); rossmann fold, NADH BI oxidoreductase; HET: NAD TCL; 2.10A {Francisella tularensis subsp} PDB: 3uic_A* 2jjy_A* | Back alignment and structure |
|---|
Probab=98.61 E-value=8.1e-08 Score=85.94 Aligned_cols=159 Identities=14% Similarity=0.171 Sum_probs=94.7
Q ss_pred CCcEEEEEcCCCh--hHHHHHHHHHhcccCCCCCCeEEEEEecccchhhhhhhHhhhhhhccCCccceEEeCCHHHHh--
Q 019990 4 NPLRVLVTGAAGQ--IGYALVPMIARGIMLGPDQPVILHMLDIEPAAEALNGVKMELIDAAFPLLKGVVATTDVVEAC-- 79 (332)
Q Consensus 4 ~~~kI~VtGaaG~--IGs~l~~~L~~~~~~~~~~~~~i~l~D~~~~~~~~~~~~~dl~~~~~~~~~~v~~~~~~~~a~-- 79 (332)
+.++|+||||+|+ ||.+++..|++.|. +|++.|++...+.+.....+.... .....|++...++.+++
T Consensus 25 ~~k~vlVTGasg~~GIG~~ia~~l~~~G~-------~V~~~~r~~~~~~~~~l~~~~~~~-~~~~~Dl~~~~~v~~~~~~ 96 (280)
T 3nrc_A 25 AGKKILITGLLSNKSIAYGIAKAMHREGA-------ELAFTYVGQFKDRVEKLCAEFNPA-AVLPCDVISDQEIKDLFVE 96 (280)
T ss_dssp TTCEEEECCCCSTTCHHHHHHHHHHHTTC-------EEEEEECTTCHHHHHHHHGGGCCS-EEEECCTTCHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHHHcCC-------EEEEeeCchHHHHHHHHHHhcCCc-eEEEeecCCHHHHHHHHHH
Confidence 3578999999977 99999999999885 899999864212222111111110 11123444333333333
Q ss_pred -----CCCcEEEEecCCCCCC---C-----CCh---hHHHhhhHHHHHHHHHHHHhhcC-CCcEEEEEeCChhhHHHHHH
Q 019990 80 -----KDVNIAVMVGGFPRKE---G-----MER---KDVMSKNVSIYKAQASALEKHAA-PNCKVLVVANPANTNALILK 142 (332)
Q Consensus 80 -----~~aDiVi~~ag~~~~~---~-----~~~---~~~~~~N~~~~~~i~~~i~~~~~-~~~~viv~snp~~~~~~~~~ 142 (332)
...|++|+.||..... + .+. ...++.|+.....+.+.+..+-. ..+++|++|+....
T Consensus 97 ~~~~~g~id~li~nAg~~~~~~~~~~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~g~iv~isS~~~~------ 170 (280)
T 3nrc_A 97 LGKVWDGLDAIVHSIAFAPRDQLEGNFIDCVTREGFSIAHDISAYSFAALAKEGRSMMKNRNASMVALTYIGAE------ 170 (280)
T ss_dssp HHHHCSSCCEEEECCCCCCGGGSSSCHHHHCCHHHHHHHHHHHTHHHHHHHHHHHHHHTTTTCEEEEEECGGGT------
T ss_pred HHHHcCCCCEEEECCccCCCcccCCccccccCHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCeEEEEeccccc------
Confidence 3579999999975320 0 121 23567787777777776655421 23577777764321
Q ss_pred HHCCCCCCCcEEEeecccHHHHHHHHHHHcCCCCCCeee
Q 019990 143 EFAPSIPAKNITCLTRLDHNRAMGQISERLKVHVSDVKN 181 (332)
Q Consensus 143 ~~~~~~~~~~i~~~t~l~~~r~~~~~a~~~~v~~~~v~~ 181 (332)
.+.+....|+.+|.....+.+.+++.+. +..|+.
T Consensus 171 ---~~~~~~~~Y~asKaal~~~~~~la~e~~--~~gi~v 204 (280)
T 3nrc_A 171 ---KAMPSYNTMGVAKASLEATVRYTALALG--EDGIKV 204 (280)
T ss_dssp ---SCCTTTHHHHHHHHHHHHHHHHHHHHHG--GGTCEE
T ss_pred ---cCCCCchhhHHHHHHHHHHHHHHHHHHH--HcCcEE
Confidence 2334444677888888888888888764 334553
|
| >1zem_A Xylitol dehydrogenase; rossmann fold, dinucleotide-binding domain, oxidoreductase; HET: NAD; 1.90A {Gluconobacter oxydans} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=98.61 E-value=1.6e-07 Score=83.18 Aligned_cols=158 Identities=17% Similarity=0.165 Sum_probs=92.1
Q ss_pred CCcEEEEEcCCChhHHHHHHHHHhcccCCCCCCeEEEEEecccchhhhhhhHhhhhhhc--c-CCccceEEeCCHHHH--
Q 019990 4 NPLRVLVTGAAGQIGYALVPMIARGIMLGPDQPVILHMLDIEPAAEALNGVKMELIDAA--F-PLLKGVVATTDVVEA-- 78 (332)
Q Consensus 4 ~~~kI~VtGaaG~IGs~l~~~L~~~~~~~~~~~~~i~l~D~~~~~~~~~~~~~dl~~~~--~-~~~~~v~~~~~~~~a-- 78 (332)
+.++++||||+|+||.+++..|++.|. +|+++|++. +.+.....++.... . ....|++...++.++
T Consensus 6 ~~k~vlVTGas~gIG~~ia~~l~~~G~-------~V~~~~r~~--~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~ 76 (262)
T 1zem_A 6 NGKVCLVTGAGGNIGLATALRLAEEGT-------AIALLDMNR--EALEKAEASVREKGVEARSYVCDVTSEEAVIGTVD 76 (262)
T ss_dssp TTCEEEEETTTSHHHHHHHHHHHHTTC-------EEEEEESCH--HHHHHHHHHHHTTTSCEEEEECCTTCHHHHHHHHH
T ss_pred CCCEEEEeCCCcHHHHHHHHHHHHCCC-------EEEEEeCCH--HHHHHHHHHHHhcCCcEEEEEecCCCHHHHHHHHH
Confidence 357899999999999999999999885 899999853 23333223332211 0 111233333333322
Q ss_pred -----hCCCcEEEEecCCC-CC-C--CCCh---hHHHhhhHHHHHHHHHHHHhhc--CCCcEEEEEeCChhhHHHHHHHH
Q 019990 79 -----CKDVNIAVMVGGFP-RK-E--GMER---KDVMSKNVSIYKAQASALEKHA--APNCKVLVVANPANTNALILKEF 144 (332)
Q Consensus 79 -----~~~aDiVi~~ag~~-~~-~--~~~~---~~~~~~N~~~~~~i~~~i~~~~--~~~~~viv~snp~~~~~~~~~~~ 144 (332)
+...|++|+.||.. .. + ..+. ...+..|+.....+.+.+..+- ....++|++|+....
T Consensus 77 ~~~~~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~g~iv~isS~~~~-------- 148 (262)
T 1zem_A 77 SVVRDFGKIDFLFNNAGYQGAFAPVQDYPSDDFARVLTINVTGAFHVLKAVSRQMITQNYGRIVNTASMAGV-------- 148 (262)
T ss_dssp HHHHHHSCCCEEEECCCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCHHHH--------
T ss_pred HHHHHhCCCCEEEECCCCCCCCCccccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCcEEEEEcchhhc--------
Confidence 23789999999874 21 1 1122 2355677766666555544331 023577777753211
Q ss_pred CCCCCCCcEEEeecccHHHHHHHHHHHcCCCCCCeee
Q 019990 145 APSIPAKNITCLTRLDHNRAMGQISERLKVHVSDVKN 181 (332)
Q Consensus 145 ~~~~~~~~i~~~t~l~~~r~~~~~a~~~~v~~~~v~~ 181 (332)
.+.+....|+.+|.....+.+.++..+. +..|+.
T Consensus 149 -~~~~~~~~Y~asK~a~~~~~~~la~e~~--~~gi~v 182 (262)
T 1zem_A 149 -KGPPNMAAYGTSKGAIIALTETAALDLA--PYNIRV 182 (262)
T ss_dssp -SCCTTBHHHHHHHHHHHHHHHHHHHHHG--GGTEEE
T ss_pred -cCCCCCchHHHHHHHHHHHHHHHHHHHH--hhCeEE
Confidence 1233333567777777777777777764 345664
|
| >4dry_A 3-oxoacyl-[acyl-carrier-protein] reductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.50A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=98.61 E-value=6.1e-08 Score=86.95 Aligned_cols=157 Identities=10% Similarity=0.082 Sum_probs=94.2
Q ss_pred CcEEEEEcCCChhHHHHHHHHHhcccCCCCCCeEEEEEecccchhhhhhhHhhhhhhc----cCCccceEEeCCHHHHh-
Q 019990 5 PLRVLVTGAAGQIGYALVPMIARGIMLGPDQPVILHMLDIEPAAEALNGVKMELIDAA----FPLLKGVVATTDVVEAC- 79 (332)
Q Consensus 5 ~~kI~VtGaaG~IGs~l~~~L~~~~~~~~~~~~~i~l~D~~~~~~~~~~~~~dl~~~~----~~~~~~v~~~~~~~~a~- 79 (332)
.++++||||+|+||.+++..|++.|. +|++.|++. +.+.....++.... .....|++...++.+++
T Consensus 33 gk~~lVTGas~GIG~aia~~la~~G~-------~V~~~~r~~--~~~~~~~~~~~~~~~~~~~~~~~Dv~d~~~v~~~~~ 103 (281)
T 4dry_A 33 GRIALVTGGGTGVGRGIAQALSAEGY-------SVVITGRRP--DVLDAAAGEIGGRTGNIVRAVVCDVGDPDQVAALFA 103 (281)
T ss_dssp -CEEEETTTTSHHHHHHHHHHHHTTC-------EEEEEESCH--HHHHHHHHHHHHHHSSCEEEEECCTTCHHHHHHHHH
T ss_pred CCEEEEeCCCCHHHHHHHHHHHHCCC-------EEEEEECCH--HHHHHHHHHHHhcCCCeEEEEEcCCCCHHHHHHHHH
Confidence 46799999999999999999999885 899999864 23333333332211 11123444333333333
Q ss_pred ------CCCcEEEEecCCCCCC----CCChh---HHHhhhHHHHHH----HHHHHHhhcCCCcEEEEEeCChhhHHHHHH
Q 019990 80 ------KDVNIAVMVGGFPRKE----GMERK---DVMSKNVSIYKA----QASALEKHAAPNCKVLVVANPANTNALILK 142 (332)
Q Consensus 80 ------~~aDiVi~~ag~~~~~----~~~~~---~~~~~N~~~~~~----i~~~i~~~~~~~~~viv~snp~~~~~~~~~ 142 (332)
...|++|+.||..... ..+.+ ..++.|+..... +++.+.+.....+++|++|+....
T Consensus 104 ~~~~~~g~iD~lvnnAG~~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~~~~~~~~~~~~g~IV~isS~~~~------ 177 (281)
T 4dry_A 104 AVRAEFARLDLLVNNAGSNVPPVPLEEVTFEQWNGIVAANLTGAFLCTQHAFRMMKAQTPRGGRIINNGSISAQ------ 177 (281)
T ss_dssp HHHHHHSCCSEEEECCCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHSSSCCEEEEEECCGGGT------
T ss_pred HHHHHcCCCCEEEECCCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCCcEEEEECCHHhC------
Confidence 3679999999974321 12222 356677766544 444444432124677777763321
Q ss_pred HHCCCCCCCcEEEeecccHHHHHHHHHHHcCCCCCCeee
Q 019990 143 EFAPSIPAKNITCLTRLDHNRAMGQISERLKVHVSDVKN 181 (332)
Q Consensus 143 ~~~~~~~~~~i~~~t~l~~~r~~~~~a~~~~v~~~~v~~ 181 (332)
.+.+....|+.+|.....+.+.++..++ +..|+.
T Consensus 178 ---~~~~~~~~Y~asKaa~~~l~~~la~e~~--~~gI~v 211 (281)
T 4dry_A 178 ---TPRPNSAPYTATKHAITGLTKSTALDGR--MHDIAC 211 (281)
T ss_dssp ---CCCTTCHHHHHHHHHHHHHHHHHHHHHG--GGTEEE
T ss_pred ---CCCCCChhHHHHHHHHHHHHHHHHHHhc--ccCeEE
Confidence 2334444678888888888888888764 445664
|
| >2dtx_A Glucose 1-dehydrogenase related protein; rossmann fold, oxidoreductase; HET: BMA; 1.60A {Thermoplasma acidophilum} PDB: 2dtd_A* 2dte_A* 2zk7_A | Back alignment and structure |
|---|
Probab=98.61 E-value=1.1e-07 Score=84.43 Aligned_cols=153 Identities=12% Similarity=0.028 Sum_probs=93.8
Q ss_pred CcEEEEEcCCChhHHHHHHHHHhcccCCCCCCeEEEEEecccchhhhhhhHhhhhhhccCCccceEEeCCHHHH------
Q 019990 5 PLRVLVTGAAGQIGYALVPMIARGIMLGPDQPVILHMLDIEPAAEALNGVKMELIDAAFPLLKGVVATTDVVEA------ 78 (332)
Q Consensus 5 ~~kI~VtGaaG~IGs~l~~~L~~~~~~~~~~~~~i~l~D~~~~~~~~~~~~~dl~~~~~~~~~~v~~~~~~~~a------ 78 (332)
.++|+||||+|+||++++..|++.|. +|+++|++... +. .. .....|++...++.++
T Consensus 8 ~k~vlVTGas~gIG~~ia~~l~~~G~-------~V~~~~r~~~~----~~-----~~-~~~~~Dl~~~~~v~~~~~~~~~ 70 (264)
T 2dtx_A 8 DKVVIVTGASMGIGRAIAERFVDEGS-------KVIDLSIHDPG----EA-----KY-DHIECDVTNPDQVKASIDHIFK 70 (264)
T ss_dssp TCEEEEESCSSHHHHHHHHHHHHTTC-------EEEEEESSCCC----SC-----SS-EEEECCTTCHHHHHHHHHHHHH
T ss_pred CCEEEEeCCCCHHHHHHHHHHHHCCC-------EEEEEecCccc----CC-----ce-EEEEecCCCHHHHHHHHHHHHH
Confidence 56899999999999999999999885 88999875421 00 00 0011223222223333
Q ss_pred -hCCCcEEEEecCCCCCC---CCCh---hHHHhhhHHHHHHHHHHHHhhc--CCCcEEEEEeCChhhHHHHHHHHCCCCC
Q 019990 79 -CKDVNIAVMVGGFPRKE---GMER---KDVMSKNVSIYKAQASALEKHA--APNCKVLVVANPANTNALILKEFAPSIP 149 (332)
Q Consensus 79 -~~~aDiVi~~ag~~~~~---~~~~---~~~~~~N~~~~~~i~~~i~~~~--~~~~~viv~snp~~~~~~~~~~~~~~~~ 149 (332)
+.+.|++|+.||..... ..+. ...++.|+.....+.+++..+- ....++|++|+.... .+.+
T Consensus 71 ~~g~iD~lv~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~g~iv~isS~~~~---------~~~~ 141 (264)
T 2dtx_A 71 EYGSISVLVNNAGIESYGKIESMSMGEWRRIIDVNLFGYYYASKFAIPYMIRSRDPSIVNISSVQAS---------IITK 141 (264)
T ss_dssp HHSCCCEEEECCCCCCCBCTTTSCHHHHHHHHHHHTHHHHHHHHHHHHHHTTSSSCEEEEECCGGGT---------SCCT
T ss_pred HcCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCCcEEEEECCchhc---------cCCC
Confidence 33799999999974321 1222 2356778877666666554432 123577777764321 2234
Q ss_pred CCcEEEeecccHHHHHHHHHHHcCCCCCCeeeeEEEec
Q 019990 150 AKNITCLTRLDHNRAMGQISERLKVHVSDVKNVIIWGN 187 (332)
Q Consensus 150 ~~~i~~~t~l~~~r~~~~~a~~~~v~~~~v~~~~V~G~ 187 (332)
+...|+.+|.....+.+.+++.++- . |+. +++.+
T Consensus 142 ~~~~Y~~sK~a~~~~~~~la~e~~~--~-i~v-n~v~P 175 (264)
T 2dtx_A 142 NASAYVTSKHAVIGLTKSIALDYAP--L-LRC-NAVCP 175 (264)
T ss_dssp TBHHHHHHHHHHHHHHHHHHHHHTT--T-SEE-EEEEE
T ss_pred CchhHHHHHHHHHHHHHHHHHHhcC--C-cEE-EEEEe
Confidence 4446788888888888888888763 3 664 34454
|
| >3p19_A BFPVVD8, putative blue fluorescent protein; rossmann-fold, oxidoreductase; HET: NAP; 2.05A {Vibrio vulnificus} | Back alignment and structure |
|---|
Probab=98.61 E-value=5.7e-08 Score=86.41 Aligned_cols=152 Identities=16% Similarity=0.166 Sum_probs=91.8
Q ss_pred CcEEEEEcCCChhHHHHHHHHHhcccCCCCCCeEEEEEecccchhhhhhhHhhhhhhccCCccceEEeCCHHHHh-----
Q 019990 5 PLRVLVTGAAGQIGYALVPMIARGIMLGPDQPVILHMLDIEPAAEALNGVKMELIDAAFPLLKGVVATTDVVEAC----- 79 (332)
Q Consensus 5 ~~kI~VtGaaG~IGs~l~~~L~~~~~~~~~~~~~i~l~D~~~~~~~~~~~~~dl~~~~~~~~~~v~~~~~~~~a~----- 79 (332)
.++|+||||+|+||.+++..|++.|. +|+++|++. +.+..... ... .....|++...++.+++
T Consensus 16 ~k~vlVTGas~gIG~aia~~l~~~G~-------~V~~~~r~~--~~~~~~~~--~~~-~~~~~Dv~d~~~v~~~~~~~~~ 83 (266)
T 3p19_A 16 KKLVVITGASSGIGEAIARRFSEEGH-------PLLLLARRV--ERLKALNL--PNT-LCAQVDVTDKYTFDTAITRAEK 83 (266)
T ss_dssp CCEEEEESTTSHHHHHHHHHHHHTTC-------CEEEEESCH--HHHHTTCC--TTE-EEEECCTTCHHHHHHHHHHHHH
T ss_pred CCEEEEECCCCHHHHHHHHHHHHCCC-------EEEEEECCH--HHHHHhhc--CCc-eEEEecCCCHHHHHHHHHHHHH
Confidence 46799999999999999999999885 789999853 22221100 000 01112343333333333
Q ss_pred --CCCcEEEEecCCCCCC---CCChh---HHHhhhHHHHHHHHH----HHHhhcCCCcEEEEEeCChhhHHHHHHHHCCC
Q 019990 80 --KDVNIAVMVGGFPRKE---GMERK---DVMSKNVSIYKAQAS----ALEKHAAPNCKVLVVANPANTNALILKEFAPS 147 (332)
Q Consensus 80 --~~aDiVi~~ag~~~~~---~~~~~---~~~~~N~~~~~~i~~----~i~~~~~~~~~viv~snp~~~~~~~~~~~~~~ 147 (332)
...|++|+.||..... ..+.+ ..++.|+.....+.+ .+++.. .+++|++|+.... .+
T Consensus 84 ~~g~iD~lvnnAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~~~~~~~~~--~g~IV~isS~~~~---------~~ 152 (266)
T 3p19_A 84 IYGPADAIVNNAGMMLLGQIDTQEANEWQRMFDVNVLGLLNGMQAVLAPMKARN--CGTIINISSIAGK---------KT 152 (266)
T ss_dssp HHCSEEEEEECCCCCCCCCTTTSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHT--CCEEEEECCGGGT---------SC
T ss_pred HCCCCCEEEECCCcCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcC--CcEEEEEcChhhC---------CC
Confidence 3789999999974321 12222 346778776655444 444443 4577777764321 23
Q ss_pred CCCCcEEEeecccHHHHHHHHHHHcCCCCCCeee
Q 019990 148 IPAKNITCLTRLDHNRAMGQISERLKVHVSDVKN 181 (332)
Q Consensus 148 ~~~~~i~~~t~l~~~r~~~~~a~~~~v~~~~v~~ 181 (332)
.+....|+.+|.....+.+.+++.++ +..|+.
T Consensus 153 ~~~~~~Y~asK~a~~~~~~~la~e~~--~~gi~v 184 (266)
T 3p19_A 153 FPDHAAYCGTKFAVHAISENVREEVA--ASNVRV 184 (266)
T ss_dssp CTTCHHHHHHHHHHHHHHHHHHHHHG--GGTCEE
T ss_pred CCCCchHHHHHHHHHHHHHHHHHHhc--ccCcEE
Confidence 34444678888888888888888865 344553
|
| >2nwq_A Probable short-chain dehydrogenase; oxidoreductase; 2.30A {Pseudomonas aeruginosa} | Back alignment and structure |
|---|
Probab=98.60 E-value=1e-07 Score=85.05 Aligned_cols=154 Identities=16% Similarity=0.136 Sum_probs=91.4
Q ss_pred cEEEEEcCCChhHHHHHHHHHhcccCCCCCCeEEEEEecccchhhhhhhHhhhhhh-c-cCCccceEEeCCHHHHhCC--
Q 019990 6 LRVLVTGAAGQIGYALVPMIARGIMLGPDQPVILHMLDIEPAAEALNGVKMELIDA-A-FPLLKGVVATTDVVEACKD-- 81 (332)
Q Consensus 6 ~kI~VtGaaG~IGs~l~~~L~~~~~~~~~~~~~i~l~D~~~~~~~~~~~~~dl~~~-~-~~~~~~v~~~~~~~~a~~~-- 81 (332)
++++||||+|+||.+++..|++.|. +|+++|++. +.+.....++... . .....|++...++.++++.
T Consensus 22 k~vlVTGas~gIG~aia~~La~~G~-------~V~~~~r~~--~~~~~~~~~~~~~~~~~~~~~Dv~d~~~v~~~~~~~~ 92 (272)
T 2nwq_A 22 STLFITGATSGFGEACARRFAEAGW-------SLVLTGRRE--ERLQALAGELSAKTRVLPLTLDVRDRAAMSAAVDNLP 92 (272)
T ss_dssp CEEEESSTTTSSHHHHHHHHHHTTC-------EEEEEESCH--HHHHHHHHHHTTTSCEEEEECCTTCHHHHHHHHHTCC
T ss_pred cEEEEeCCCCHHHHHHHHHHHHCCC-------EEEEEECCH--HHHHHHHHHhhcCCcEEEEEcCCCCHHHHHHHHHHHH
Confidence 6799999999999999999999885 899999863 2333333333211 0 0112344433344444443
Q ss_pred -----CcEEEEecCCCCC--C--CCCh---hHHHhhhHHHH----HHHHHHHHhhcCCCc-EEEEEeCChhhHHHHHHHH
Q 019990 82 -----VNIAVMVGGFPRK--E--GMER---KDVMSKNVSIY----KAQASALEKHAAPNC-KVLVVANPANTNALILKEF 144 (332)
Q Consensus 82 -----aDiVi~~ag~~~~--~--~~~~---~~~~~~N~~~~----~~i~~~i~~~~~~~~-~viv~snp~~~~~~~~~~~ 144 (332)
.|++|+.||.... + ..+. ...++.|+... +.+++.+++.+ .. ++|++|+....
T Consensus 93 ~~~g~iD~lvnnAG~~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~~~~m~~~~--~g~~IV~isS~~~~-------- 162 (272)
T 2nwq_A 93 EEFATLRGLINNAGLALGTDPAQSCDLDDWDTMVDTNIKGLLYSTRLLLPRLIAHG--AGASIVNLGSVAGK-------- 162 (272)
T ss_dssp GGGSSCCEEEECCCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHC--TTCEEEEECCGGGT--------
T ss_pred HHhCCCCEEEECCCCCCCCCCcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC--CCcEEEEeCCchhc--------
Confidence 5999999997432 1 1222 23466777664 44445555543 34 77777764321
Q ss_pred CCCCCCCcEEEeecccHHHHHHHHHHHcCCCCCCeee
Q 019990 145 APSIPAKNITCLTRLDHNRAMGQISERLKVHVSDVKN 181 (332)
Q Consensus 145 ~~~~~~~~i~~~t~l~~~r~~~~~a~~~~v~~~~v~~ 181 (332)
.+.+....|+.+|.....+.+.++..+. +..|+.
T Consensus 163 -~~~~~~~~Y~asKaa~~~l~~~la~el~--~~gIrv 196 (272)
T 2nwq_A 163 -WPYPGSHVYGGTKAFVEQFSLNLRCDLQ--GTGVRV 196 (272)
T ss_dssp -SCCTTCHHHHHHHHHHHHHHHHHHTTCT--TSCCEE
T ss_pred -cCCCCCchHHHHHHHHHHHHHHHHHHhC--ccCeEE
Confidence 1233334567777777777777776643 455664
|
| >3imf_A Short chain dehydrogenase; structural genomics, infectious D center for structural genomics of infectious diseases, oxidoreductase, csgid; HET: MSE; 1.99A {Bacillus anthracis str} | Back alignment and structure |
|---|
Probab=98.60 E-value=1.4e-07 Score=83.27 Aligned_cols=150 Identities=11% Similarity=0.053 Sum_probs=89.4
Q ss_pred CCcEEEEEcCCChhHHHHHHHHHhcccCCCCCCeEEEEEecccchhhhhhhHhhhhhhcc---CCccceEEeCCHHHHh-
Q 019990 4 NPLRVLVTGAAGQIGYALVPMIARGIMLGPDQPVILHMLDIEPAAEALNGVKMELIDAAF---PLLKGVVATTDVVEAC- 79 (332)
Q Consensus 4 ~~~kI~VtGaaG~IGs~l~~~L~~~~~~~~~~~~~i~l~D~~~~~~~~~~~~~dl~~~~~---~~~~~v~~~~~~~~a~- 79 (332)
+.++++||||+|+||.+++..|++.|. +|+++|++. +.+.....++..... ....|++...++.+++
T Consensus 5 ~~k~vlVTGas~gIG~aia~~l~~~G~-------~V~~~~r~~--~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~ 75 (257)
T 3imf_A 5 KEKVVIITGGSSGMGKGMATRFAKEGA-------RVVITGRTK--EKLEEAKLEIEQFPGQILTVQMDVRNTDDIQKMIE 75 (257)
T ss_dssp TTCEEEETTTTSHHHHHHHHHHHHTTC-------EEEEEESCH--HHHHHHHHHHCCSTTCEEEEECCTTCHHHHHHHHH
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHCCC-------EEEEEeCCH--HHHHHHHHHHHhcCCcEEEEEccCCCHHHHHHHHH
Confidence 457899999999999999999999885 899999864 233333333322110 1123444333333333
Q ss_pred ------CCCcEEEEecCCCCCC---CCCh---hHHHhhhHHHHHHHHHHHH----hhcCCCcEEEEEeCChhhHHHHHHH
Q 019990 80 ------KDVNIAVMVGGFPRKE---GMER---KDVMSKNVSIYKAQASALE----KHAAPNCKVLVVANPANTNALILKE 143 (332)
Q Consensus 80 ------~~aDiVi~~ag~~~~~---~~~~---~~~~~~N~~~~~~i~~~i~----~~~~~~~~viv~snp~~~~~~~~~~ 143 (332)
...|++|+.||..... ..+. ...++.|+.....+.+++. +.. ..+++|++|+....
T Consensus 76 ~~~~~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~n~~g~~~~~~~~~~~~~~~~-~~g~iv~isS~~~~------- 147 (257)
T 3imf_A 76 QIDEKFGRIDILINNAAGNFICPAEDLSVNGWNSVINIVLNGTFYCSQAIGKYWIEKG-IKGNIINMVATYAW------- 147 (257)
T ss_dssp HHHHHHSCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT-CCCEEEEECCGGGG-------
T ss_pred HHHHHcCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhhC-CCcEEEEECchhhc-------
Confidence 3789999999964321 1222 2356778877766666553 322 34677777764321
Q ss_pred HCCCCCCCcEEEeecccHHHHHHHHHHHc
Q 019990 144 FAPSIPAKNITCLTRLDHNRAMGQISERL 172 (332)
Q Consensus 144 ~~~~~~~~~i~~~t~l~~~r~~~~~a~~~ 172 (332)
.+.+....|+.+|.....+.+.++..+
T Consensus 148 --~~~~~~~~Y~asKaa~~~l~~~la~e~ 174 (257)
T 3imf_A 148 --DAGPGVIHSAAAKAGVLAMTKTLAVEW 174 (257)
T ss_dssp --SCCTTCHHHHHHHHHHHHHHHHHHHHH
T ss_pred --cCCCCcHHHHHHHHHHHHHHHHHHHHh
Confidence 122333356677776666666666554
|
| >3tl3_A Short-chain type dehydrogenase/reductase; ssgcid, seattle structural genomics center for infectious DI oxidoreductase; 1.85A {Mycobacterium ulcerans} | Back alignment and structure |
|---|
Probab=98.60 E-value=2.9e-08 Score=87.69 Aligned_cols=158 Identities=16% Similarity=0.082 Sum_probs=89.7
Q ss_pred CCCCCcEEEEEcCCChhHHHHHHHHHhcccCCCCCCeEEEEEecccchhhhhhhHhhhhhhccCCccceEEeCCHHHHh-
Q 019990 1 MAKNPLRVLVTGAAGQIGYALVPMIARGIMLGPDQPVILHMLDIEPAAEALNGVKMELIDAAFPLLKGVVATTDVVEAC- 79 (332)
Q Consensus 1 m~~~~~kI~VtGaaG~IGs~l~~~L~~~~~~~~~~~~~i~l~D~~~~~~~~~~~~~dl~~~~~~~~~~v~~~~~~~~a~- 79 (332)
|..+.++++||||+|+||.+++..|++.|. +|++.|++.. .. ..++.........|++...++.+++
T Consensus 5 m~l~~k~vlVTGas~gIG~aia~~l~~~G~-------~V~~~~r~~~--~~---~~~~~~~~~~~~~D~~~~~~v~~~~~ 72 (257)
T 3tl3_A 5 MEIRDAVAVVTGGASGLGLATTKRLLDAGA-------QVVVLDIRGE--DV---VADLGDRARFAAADVTDEAAVASALD 72 (257)
T ss_dssp -----CEEEEETTTSHHHHHHHHHHHHHTC-------EEEEEESSCH--HH---HHHTCTTEEEEECCTTCHHHHHHHHH
T ss_pred ceecCCEEEEeCCCCHHHHHHHHHHHHCCC-------EEEEEeCchH--HH---HHhcCCceEEEECCCCCHHHHHHHHH
Confidence 444567899999999999999999999885 8999997431 11 1111111011123443333333333
Q ss_pred -----CCCcEEEEecCCCCC-------CCCCh---hHHHhhhHHHHHHHHHHHHhhcC----------CCcEEEEEeCCh
Q 019990 80 -----KDVNIAVMVGGFPRK-------EGMER---KDVMSKNVSIYKAQASALEKHAA----------PNCKVLVVANPA 134 (332)
Q Consensus 80 -----~~aDiVi~~ag~~~~-------~~~~~---~~~~~~N~~~~~~i~~~i~~~~~----------~~~~viv~snp~ 134 (332)
...|++|+.||.... ...+. ...++.|+.....+.+++..+-. ..+++|++|+..
T Consensus 73 ~~~~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~~~~~~~~~~~g~iv~isS~~ 152 (257)
T 3tl3_A 73 LAETMGTLRIVVNCAGTGNAIRVLSRDGVFSLAAFRKIVDINLVGSFNVLRLAAERIAKTEPVGPNAEERGVIINTASVA 152 (257)
T ss_dssp HHHHHSCEEEEEECGGGSHHHHHHHHTCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCCC--CCCCSEEEEEECCCC
T ss_pred HHHHhCCCCEEEECCCCCCCcccccccccCCHHHHHHHHHHccHHHHHHHHHHHHHHHHhcccccccCCCcEEEEEcchh
Confidence 378999999986321 01222 34567788777666666654321 245777777543
Q ss_pred hhHHHHHHHHCCCCCCCcEEEeecccHHHHHHHHHHHcCCCCCCeee
Q 019990 135 NTNALILKEFAPSIPAKNITCLTRLDHNRAMGQISERLKVHVSDVKN 181 (332)
Q Consensus 135 ~~~~~~~~~~~~~~~~~~i~~~t~l~~~r~~~~~a~~~~v~~~~v~~ 181 (332)
... +.+....|+.+|.....+.+.++..++ +..|+.
T Consensus 153 ~~~---------~~~~~~~Y~asKaa~~~~~~~la~e~~--~~gI~v 188 (257)
T 3tl3_A 153 AFD---------GQIGQAAYSASKGGVVGMTLPIARDLA--SHRIRV 188 (257)
T ss_dssp --C---------CHHHHHHHHHHHHHHHHHHHHHHHHHG--GGTEEE
T ss_pred hcC---------CCCCCccHHHHHHHHHHHHHHHHHHhc--ccCcEE
Confidence 211 111112346677777778888888765 445664
|
| >1zmt_A Haloalcohol dehalogenase HHEC; halohydrin dehalogenase, epoxide catalysis, enantioselectivity, lyase; HET: RNO; 1.70A {Agrobacterium tumefaciens} SCOP: c.2.1.2 PDB: 1pwz_A 1px0_A* 1pwx_A* 1zo8_A* | Back alignment and structure |
|---|
Probab=98.60 E-value=1e-07 Score=84.01 Aligned_cols=145 Identities=11% Similarity=0.040 Sum_probs=86.1
Q ss_pred CcEEEEEcCCChhHHHHHHHHHhcccCCCCCCeEEEEEecccchhhhhhhHhhhhhhccCCccceEEeCCHHHH------
Q 019990 5 PLRVLVTGAAGQIGYALVPMIARGIMLGPDQPVILHMLDIEPAAEALNGVKMELIDAAFPLLKGVVATTDVVEA------ 78 (332)
Q Consensus 5 ~~kI~VtGaaG~IGs~l~~~L~~~~~~~~~~~~~i~l~D~~~~~~~~~~~~~dl~~~~~~~~~~v~~~~~~~~a------ 78 (332)
|++|+||||+|+||.+++..|++.|. +|++.|++.. .+.... ++....... ..+ ...++.++
T Consensus 1 Mk~vlVTGas~gIG~~ia~~l~~~G~-------~V~~~~r~~~--~~~~~~-~l~~~~~~~-~~~-d~~~v~~~~~~~~~ 68 (254)
T 1zmt_A 1 MSTAIVTNVKHFGGMGSALRLSEAGH-------TVACHDESFK--QKDELE-AFAETYPQL-KPM-SEQEPAELIEAVTS 68 (254)
T ss_dssp -CEEEESSTTSTTHHHHHHHHHHTTC-------EEEECCGGGG--SHHHHH-HHHHHCTTS-EEC-CCCSHHHHHHHHHH
T ss_pred CeEEEEeCCCchHHHHHHHHHHHCCC-------EEEEEeCCHH--HHHHHH-HHHhcCCcE-EEE-CHHHHHHHHHHHHH
Confidence 35799999999999999999999885 8999998542 222211 122111000 001 22333333
Q ss_pred -hCCCcEEEEecCCC-CCC---CCCh---hHHHhhhHHHHHHHHHHH----HhhcCCCcEEEEEeCChhhHHHHHHHHCC
Q 019990 79 -CKDVNIAVMVGGFP-RKE---GMER---KDVMSKNVSIYKAQASAL----EKHAAPNCKVLVVANPANTNALILKEFAP 146 (332)
Q Consensus 79 -~~~aDiVi~~ag~~-~~~---~~~~---~~~~~~N~~~~~~i~~~i----~~~~~~~~~viv~snp~~~~~~~~~~~~~ 146 (332)
+...|++|+.||.. ... ..+. ...++.|+.....+.+++ ++.. ..++|++|+.... .
T Consensus 69 ~~g~iD~lv~nAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~--~g~iv~isS~~~~---------~ 137 (254)
T 1zmt_A 69 AYGQVDVLVSNDIFAPEFQPIDKYAVEDYRGAVEALQIRPFALVNAVASQMKKRK--SGHIIFITSATPF---------G 137 (254)
T ss_dssp HHSCCCEEEEECCCCCCCCCGGGSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHT--CCEEEEECCSTTT---------S
T ss_pred HhCCCCEEEECCCcCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcC--CcEEEEECCcccc---------c
Confidence 33789999999975 211 1122 235667776665555544 3432 3577777764321 1
Q ss_pred CCCCCcEEEeecccHHHHHHHHHHHc
Q 019990 147 SIPAKNITCLTRLDHNRAMGQISERL 172 (332)
Q Consensus 147 ~~~~~~i~~~t~l~~~r~~~~~a~~~ 172 (332)
+.+....|+.+|.....+.+.+++.+
T Consensus 138 ~~~~~~~Y~~sK~a~~~~~~~la~e~ 163 (254)
T 1zmt_A 138 PWKELSTYTSARAGACTLANALSKEL 163 (254)
T ss_dssp CCTTCHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCchHHHHHHHHHHHHHHHHHHHh
Confidence 23333457778887788888888776
|
| >1xu9_A Corticosteroid 11-beta-dehydrogenase, isozyme 1; hydroxysteroid, SDR, oxidoreductase; HET: NDP CPS MES; 1.55A {Homo sapiens} SCOP: c.2.1.2 PDB: 1xu7_A* 3bzu_A* 3czr_A* 3d3e_A* 3d4n_A* 3fco_A* 3frj_A* 3h6k_A* 3hfg_A* 3oq1_A* 3qqp_A* 3pdj_A* 3d5q_A* 2rbe_A* 3byz_A* 3ey4_A* 3tfq_A* 3ch6_A* 2irw_A* 2ilt_A* ... | Back alignment and structure |
|---|
Probab=98.60 E-value=9.2e-08 Score=85.78 Aligned_cols=161 Identities=15% Similarity=0.105 Sum_probs=93.8
Q ss_pred CCcEEEEEcCCChhHHHHHHHHHhcccCCCCCCeEEEEEecccchhhhhhhHhhhhhhc---c-CCccceEEeCCHHHHh
Q 019990 4 NPLRVLVTGAAGQIGYALVPMIARGIMLGPDQPVILHMLDIEPAAEALNGVKMELIDAA---F-PLLKGVVATTDVVEAC 79 (332)
Q Consensus 4 ~~~kI~VtGaaG~IGs~l~~~L~~~~~~~~~~~~~i~l~D~~~~~~~~~~~~~dl~~~~---~-~~~~~v~~~~~~~~a~ 79 (332)
+.++|+||||+|+||.+++..|++.|. +|+++|++. +.+.....++.... . ....|++...++.+++
T Consensus 27 ~~k~vlITGasggIG~~la~~l~~~G~-------~V~~~~r~~--~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~v~~~~ 97 (286)
T 1xu9_A 27 QGKKVIVTGASKGIGREMAYHLAKMGA-------HVVVTARSK--ETLQKVVSHCLELGAASAHYIAGTMEDMTFAEQFV 97 (286)
T ss_dssp TTCEEEESSCSSHHHHHHHHHHHHTTC-------EEEEEESCH--HHHHHHHHHHHHHTCSEEEEEECCTTCHHHHHHHH
T ss_pred CCCEEEEeCCCcHHHHHHHHHHHHCCC-------EEEEEECCH--HHHHHHHHHHHHhCCCceEEEeCCCCCHHHHHHHH
Confidence 346899999999999999999999885 899999864 23332222222110 0 1113333322333333
Q ss_pred -------CCCcEEEEe-cCCCCCC--CCCh---hHHHhhhHHHHHHHHHHHHhhc-CCCcEEEEEeCChhhHHHHHHHHC
Q 019990 80 -------KDVNIAVMV-GGFPRKE--GMER---KDVMSKNVSIYKAQASALEKHA-APNCKVLVVANPANTNALILKEFA 145 (332)
Q Consensus 80 -------~~aDiVi~~-ag~~~~~--~~~~---~~~~~~N~~~~~~i~~~i~~~~-~~~~~viv~snp~~~~~~~~~~~~ 145 (332)
.+.|+||+. ||..... ..+. ...+..|+.....+.+++...- ....++|++|+....
T Consensus 98 ~~~~~~~g~iD~li~naag~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~~g~iv~isS~~~~--------- 168 (286)
T 1xu9_A 98 AQAGKLMGGLDMLILNHITNTSLNLFHDDIHHVRKSMEVNFLSYVVLTVAALPMLKQSNGSIVVVSSLAGK--------- 168 (286)
T ss_dssp HHHHHHHTSCSEEEECCCCCCCCCCCCSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEEEGGGT---------
T ss_pred HHHHHHcCCCCEEEECCccCCCCccccCCHHHHHHHHHHHhhHHHHHHHHHHHHHHHCCCEEEEECCcccc---------
Confidence 378999999 5664321 1222 2356778777666665554321 012467777753321
Q ss_pred CCCCCCcEEEeecccHHHHHHHHHHHcCCCCCCeeee
Q 019990 146 PSIPAKNITCLTRLDHNRAMGQISERLKVHVSDVKNV 182 (332)
Q Consensus 146 ~~~~~~~i~~~t~l~~~r~~~~~a~~~~v~~~~v~~~ 182 (332)
.+.+....|+.+|.....+...+++.++.....|+..
T Consensus 169 ~~~~~~~~Y~asK~a~~~~~~~l~~e~~~~~~~i~v~ 205 (286)
T 1xu9_A 169 VAYPMVAAYSASKFALDGFFSSIRKEYSVSRVNVSIT 205 (286)
T ss_dssp SCCTTCHHHHHHHHHHHHHHHHHHHHHHHHTCCCEEE
T ss_pred cCCCCccHHHHHHHHHHHHHHHHHHHHhhcCCCeEEE
Confidence 1233344677788877788877887774444556543
|
| >4dmm_A 3-oxoacyl-[acyl-carrier-protein] reductase; rossmann fold, oxoacyl-ACP reductase, NADP binding, fatty AC biosynthsis, oxidoreductase; HET: NAP; 2.38A {Synechococcus elongatus} PDB: 4dml_A* | Back alignment and structure |
|---|
Probab=98.59 E-value=8.9e-08 Score=85.28 Aligned_cols=157 Identities=17% Similarity=0.149 Sum_probs=94.2
Q ss_pred CCcEEEEEcCCChhHHHHHHHHHhcccCCCCCCeEEEEEecccchhhhhhhHhhhhhhcc---CCccceEEeCCHHHHhC
Q 019990 4 NPLRVLVTGAAGQIGYALVPMIARGIMLGPDQPVILHMLDIEPAAEALNGVKMELIDAAF---PLLKGVVATTDVVEACK 80 (332)
Q Consensus 4 ~~~kI~VtGaaG~IGs~l~~~L~~~~~~~~~~~~~i~l~D~~~~~~~~~~~~~dl~~~~~---~~~~~v~~~~~~~~a~~ 80 (332)
+.++++||||+|+||.+++..|++.|. +|++.+.+.. +.+.....++..... ....|++...++.++++
T Consensus 27 ~~k~vlVTGas~gIG~aia~~la~~G~-------~V~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~D~~d~~~v~~~~~ 98 (269)
T 4dmm_A 27 TDRIALVTGASRGIGRAIALELAAAGA-------KVAVNYASSA-GAADEVVAAIAAAGGEAFAVKADVSQESEVEALFA 98 (269)
T ss_dssp TTCEEEETTCSSHHHHHHHHHHHHTTC-------EEEEEESSCH-HHHHHHHHHHHHTTCCEEEEECCTTSHHHHHHHHH
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHCCC-------EEEEEeCCCh-HHHHHHHHHHHhcCCcEEEEECCCCCHHHHHHHHH
Confidence 457899999999999999999999885 7888887432 223322233322110 11234443333333333
Q ss_pred -------CCcEEEEecCCCCCC---CCCh---hHHHhhhHHHHHHHHHHH----HhhcCCCcEEEEEeCChhhHHHHHHH
Q 019990 81 -------DVNIAVMVGGFPRKE---GMER---KDVMSKNVSIYKAQASAL----EKHAAPNCKVLVVANPANTNALILKE 143 (332)
Q Consensus 81 -------~aDiVi~~ag~~~~~---~~~~---~~~~~~N~~~~~~i~~~i----~~~~~~~~~viv~snp~~~~~~~~~~ 143 (332)
..|++|+.||..... ..+. ...++.|+.....+.+++ .+.. .+++|++|+....
T Consensus 99 ~~~~~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~~--~g~iv~isS~~~~------- 169 (269)
T 4dmm_A 99 AVIERWGRLDVLVNNAGITRDTLLLRMKRDDWQSVLDLNLGGVFLCSRAAAKIMLKQR--SGRIINIASVVGE------- 169 (269)
T ss_dssp HHHHHHSCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHT--CCEEEEECCHHHH-------
T ss_pred HHHHHcCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcC--CcEEEEECchhhc-------
Confidence 789999999975321 1122 235667877665555554 4332 4577777753211
Q ss_pred HCCCCCCCcEEEeecccHHHHHHHHHHHcCCCCCCeee
Q 019990 144 FAPSIPAKNITCLTRLDHNRAMGQISERLKVHVSDVKN 181 (332)
Q Consensus 144 ~~~~~~~~~i~~~t~l~~~r~~~~~a~~~~v~~~~v~~ 181 (332)
.+.+....|+.+|.....+.+.+++.++ +..|+.
T Consensus 170 --~~~~~~~~Y~asK~a~~~l~~~la~e~~--~~gi~v 203 (269)
T 4dmm_A 170 --MGNPGQANYSAAKAGVIGLTKTVAKELA--SRGITV 203 (269)
T ss_dssp --HCCTTCHHHHHHHHHHHHHHHHHHHHHG--GGTCEE
T ss_pred --CCCCCchhHHHHHHHHHHHHHHHHHHHh--hhCcEE
Confidence 1234444678888888888888888764 334553
|
| >3nyw_A Putative oxidoreductase; fatty acid synthesis,3-oxoacyl-[ACP] reductase, NADP+ bindin rossman fold, PSI-II, nysgxrc; 2.16A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=98.59 E-value=1.5e-07 Score=82.90 Aligned_cols=157 Identities=16% Similarity=0.117 Sum_probs=93.5
Q ss_pred CCCcEEEEEcCCChhHHHHHHHHHhcccCCCCCCeEEEEEecccchhhhhhhHhhhhhhc---c---CCccceEEeCCHH
Q 019990 3 KNPLRVLVTGAAGQIGYALVPMIARGIMLGPDQPVILHMLDIEPAAEALNGVKMELIDAA---F---PLLKGVVATTDVV 76 (332)
Q Consensus 3 ~~~~kI~VtGaaG~IGs~l~~~L~~~~~~~~~~~~~i~l~D~~~~~~~~~~~~~dl~~~~---~---~~~~~v~~~~~~~ 76 (332)
.+.++++||||+|+||.+++..|++.|. +|+++|++. +.+.....++.... . ....|++...++.
T Consensus 5 ~~~k~~lVTGas~GIG~aia~~l~~~G~-------~V~~~~r~~--~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~ 75 (250)
T 3nyw_A 5 KQKGLAIITGASQGIGAVIAAGLATDGY-------RVVLIARSK--QNLEKVHDEIMRSNKHVQEPIVLPLDITDCTKAD 75 (250)
T ss_dssp CCCCEEEEESTTSHHHHHHHHHHHHHTC-------EEEEEESCH--HHHHHHHHHHHHHCTTSCCCEEEECCTTCHHHHH
T ss_pred CCCCEEEEECCCcHHHHHHHHHHHHCCC-------EEEEEECCH--HHHHHHHHHHHHhccccCcceEEeccCCCHHHHH
Confidence 3567899999999999999999999885 899999864 33433333332210 0 1113443333333
Q ss_pred HHh-------CCCcEEEEecCCCCCC--CCCh---hHHHhhhHHHHHHHHHHH----HhhcCCCcEEEEEeCChhhHHHH
Q 019990 77 EAC-------KDVNIAVMVGGFPRKE--GMER---KDVMSKNVSIYKAQASAL----EKHAAPNCKVLVVANPANTNALI 140 (332)
Q Consensus 77 ~a~-------~~aDiVi~~ag~~~~~--~~~~---~~~~~~N~~~~~~i~~~i----~~~~~~~~~viv~snp~~~~~~~ 140 (332)
+++ ...|++|+.||..... ..+. ...++.|+.....+.+++ ++. ..+++|++|+....
T Consensus 76 ~~~~~~~~~~g~iD~lvnnAg~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~--~~g~iv~isS~~~~---- 149 (250)
T 3nyw_A 76 TEIKDIHQKYGAVDILVNAAAMFMDGSLSEPVDNFRKIMEINVIAQYGILKTVTEIMKVQ--KNGYIFNVASRAAK---- 149 (250)
T ss_dssp HHHHHHHHHHCCEEEEEECCCCCCCCCCSCHHHHHHHHHHHHTHHHHHHHHHHHHHHHHH--TCEEEEEECC--------
T ss_pred HHHHHHHHhcCCCCEEEECCCcCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhC--CCeEEEEEccHHhc----
Confidence 333 3689999999974321 1222 234567776655555554 443 24677777764321
Q ss_pred HHHHCCCCCCCcEEEeecccHHHHHHHHHHHcCCCCCCeee
Q 019990 141 LKEFAPSIPAKNITCLTRLDHNRAMGQISERLKVHVSDVKN 181 (332)
Q Consensus 141 ~~~~~~~~~~~~i~~~t~l~~~r~~~~~a~~~~v~~~~v~~ 181 (332)
.+.++...|+.+|.....+.+.++..++ +..|+.
T Consensus 150 -----~~~~~~~~Y~asKaa~~~l~~~la~e~~--~~gi~v 183 (250)
T 3nyw_A 150 -----YGFADGGIYGSTKFALLGLAESLYRELA--PLGIRV 183 (250)
T ss_dssp --------CCTTHHHHHHHHHHHHHHHHHHHHG--GGTEEE
T ss_pred -----CCCCCCcchHHHHHHHHHHHHHHHHHhh--hcCcEE
Confidence 1123334678888888888888888764 345664
|
| >3ppi_A 3-hydroxyacyl-COA dehydrogenase type-2; ssgcid, dehydrogenas mycobacterium avium, structural genomics; 2.00A {Mycobacterium avium} | Back alignment and structure |
|---|
Probab=98.58 E-value=1.6e-07 Score=83.99 Aligned_cols=157 Identities=15% Similarity=0.130 Sum_probs=92.6
Q ss_pred CcEEEEEcCCChhHHHHHHHHHhcccCCCCCCeEEEEEecccchhhhhhhHhhhhhhccCCccceEEeCCHHHHhC----
Q 019990 5 PLRVLVTGAAGQIGYALVPMIARGIMLGPDQPVILHMLDIEPAAEALNGVKMELIDAAFPLLKGVVATTDVVEACK---- 80 (332)
Q Consensus 5 ~~kI~VtGaaG~IGs~l~~~L~~~~~~~~~~~~~i~l~D~~~~~~~~~~~~~dl~~~~~~~~~~v~~~~~~~~a~~---- 80 (332)
.++++||||+|+||.+++..|++.|. +|++.|++. +.+.....++.........|++...++.++++
T Consensus 30 ~k~vlVTGas~GIG~aia~~l~~~G~-------~Vi~~~r~~--~~~~~~~~~~~~~~~~~~~Dl~~~~~v~~~~~~~~~ 100 (281)
T 3ppi_A 30 GASAIVSGGAGGLGEATVRRLHADGL-------GVVIADLAA--EKGKALADELGNRAEFVSTNVTSEDSVLAAIEAANQ 100 (281)
T ss_dssp TEEEEEETTTSHHHHHHHHHHHHTTC-------EEEEEESCH--HHHHHHHHHHCTTEEEEECCTTCHHHHHHHHHHHTT
T ss_pred CCEEEEECCCChHHHHHHHHHHHCCC-------EEEEEeCCh--HHHHHHHHHhCCceEEEEcCCCCHHHHHHHHHHHHH
Confidence 46799999999999999999999885 899999863 23333333331111111234443333333332
Q ss_pred --CCcEEEEe-cCCCCCC--------CCCh---hHHHhhhHHHHHHHHHHHHhhc--------CCCcEEEEEeCChhhHH
Q 019990 81 --DVNIAVMV-GGFPRKE--------GMER---KDVMSKNVSIYKAQASALEKHA--------APNCKVLVVANPANTNA 138 (332)
Q Consensus 81 --~aDiVi~~-ag~~~~~--------~~~~---~~~~~~N~~~~~~i~~~i~~~~--------~~~~~viv~snp~~~~~ 138 (332)
..|++|+. ||..... ..+. ...++.|+.....+.+.+...- ...+++|++|+....
T Consensus 101 ~~~id~lv~~aag~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~~~~~g~iv~isS~~~~-- 178 (281)
T 3ppi_A 101 LGRLRYAVVAHGGFGVAQRIVQRDGSPADMGGFTKTIDLYLNGTYNVARLVAASIAAAEPRENGERGALVLTASIAGY-- 178 (281)
T ss_dssp SSEEEEEEECCCCCCCCCCSBCTTSCBCCHHHHHHHHHHHTHHHHHHHHHHHHHHHTSCCCTTSCCEEEEEECCGGGT--
T ss_pred hCCCCeEEEccCcccccccccccccccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhhcccccCCCeEEEEEeccccc--
Confidence 57999998 5542211 1121 3456677766666655554321 124577777764321
Q ss_pred HHHHHHCCCCCCCcEEEeecccHHHHHHHHHHHcCCCCCCeee
Q 019990 139 LILKEFAPSIPAKNITCLTRLDHNRAMGQISERLKVHVSDVKN 181 (332)
Q Consensus 139 ~~~~~~~~~~~~~~i~~~t~l~~~r~~~~~a~~~~v~~~~v~~ 181 (332)
.+.+....|+.+|.....+...+++.+. +..|+.
T Consensus 179 -------~~~~~~~~Y~asKaa~~~~~~~la~e~~--~~gi~v 212 (281)
T 3ppi_A 179 -------EGQIGQTAYAAAKAGVIGLTIAAARDLS--SAGIRV 212 (281)
T ss_dssp -------SCCTTCHHHHHHHHHHHHHHHHHHHHHG--GGTEEE
T ss_pred -------CCCCCCcccHHHHHHHHHHHHHHHHHHh--hcCeEE
Confidence 2234444678888888888888888874 334664
|
| >3ftp_A 3-oxoacyl-[acyl-carrier protein] reductase; ssgcid, 3-ketoacyl-(acyl-carrier- protein) reductase, oxidoreductase, structural genomics; 2.05A {Burkholderia pseudomallei} | Back alignment and structure |
|---|
Probab=98.58 E-value=7.6e-08 Score=85.78 Aligned_cols=158 Identities=15% Similarity=0.172 Sum_probs=96.4
Q ss_pred CCcEEEEEcCCChhHHHHHHHHHhcccCCCCCCeEEEEEecccchhhhhhhHhhhhhhcc---CCccceEEeCCHHHHh-
Q 019990 4 NPLRVLVTGAAGQIGYALVPMIARGIMLGPDQPVILHMLDIEPAAEALNGVKMELIDAAF---PLLKGVVATTDVVEAC- 79 (332)
Q Consensus 4 ~~~kI~VtGaaG~IGs~l~~~L~~~~~~~~~~~~~i~l~D~~~~~~~~~~~~~dl~~~~~---~~~~~v~~~~~~~~a~- 79 (332)
+.++++||||+|+||.+++..|++.|. +|++.|++. +.+.....++..... ....|++...++.+.+
T Consensus 27 ~~k~~lVTGas~GIG~aia~~la~~G~-------~V~~~~r~~--~~~~~~~~~~~~~~~~~~~~~~Dv~d~~~v~~~~~ 97 (270)
T 3ftp_A 27 DKQVAIVTGASRGIGRAIALELARRGA-------MVIGTATTE--AGAEGIGAAFKQAGLEGRGAVLNVNDATAVDALVE 97 (270)
T ss_dssp TTCEEEETTCSSHHHHHHHHHHHHTTC-------EEEEEESSH--HHHHHHHHHHHHHTCCCEEEECCTTCHHHHHHHHH
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHCCC-------EEEEEeCCH--HHHHHHHHHHHhcCCcEEEEEEeCCCHHHHHHHHH
Confidence 346899999999999999999999886 899999864 233333333332211 1123444333333333
Q ss_pred ------CCCcEEEEecCCCCCC---CCChh---HHHhhhHHHHHHHHHHHHhhc--CCCcEEEEEeCChhhHHHHHHHHC
Q 019990 80 ------KDVNIAVMVGGFPRKE---GMERK---DVMSKNVSIYKAQASALEKHA--APNCKVLVVANPANTNALILKEFA 145 (332)
Q Consensus 80 ------~~aDiVi~~ag~~~~~---~~~~~---~~~~~N~~~~~~i~~~i~~~~--~~~~~viv~snp~~~~~~~~~~~~ 145 (332)
...|++|+.||..... ..+.+ ..++.|+.....+.+++...- ...+++|++|+....
T Consensus 98 ~~~~~~g~iD~lvnnAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~~~g~iv~isS~~~~--------- 168 (270)
T 3ftp_A 98 STLKEFGALNVLVNNAGITQDQLAMRMKDDEWDAVIDTNLKAVFRLSRAVLRPMMKARGGRIVNITSVVGS--------- 168 (270)
T ss_dssp HHHHHHSCCCEEEECCCCCCCBCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCHHHH---------
T ss_pred HHHHHcCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCCCEEEEECchhhC---------
Confidence 3789999999974321 12222 356778777766666554221 134677777763221
Q ss_pred CCCCCCcEEEeecccHHHHHHHHHHHcCCCCCCeee
Q 019990 146 PSIPAKNITCLTRLDHNRAMGQISERLKVHVSDVKN 181 (332)
Q Consensus 146 ~~~~~~~i~~~t~l~~~r~~~~~a~~~~v~~~~v~~ 181 (332)
.+.+....|+.+|.....+.+.+++.++ +..|+.
T Consensus 169 ~~~~~~~~Y~asKaa~~~l~~~la~e~~--~~gI~v 202 (270)
T 3ftp_A 169 AGNPGQVNYAAAKAGVAGMTRALAREIG--SRGITV 202 (270)
T ss_dssp HCCTTBHHHHHHHHHHHHHHHHHHHHHG--GGTEEE
T ss_pred CCCCCchhHHHHHHHHHHHHHHHHHHHh--hhCeEE
Confidence 1234444678888888888888888864 345664
|
| >3sc4_A Short chain dehydrogenase (A0QTM2 homolog); ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, structu genomics; 2.50A {Mycobacterium thermoresistibile} | Back alignment and structure |
|---|
Probab=98.58 E-value=2.1e-07 Score=83.51 Aligned_cols=164 Identities=15% Similarity=0.155 Sum_probs=98.3
Q ss_pred CCCCCcEEEEEcCCChhHHHHHHHHHhcccCCCCCCeEEEEEecccch-h----hhhhhHhhhhhhc--c-CCccceEEe
Q 019990 1 MAKNPLRVLVTGAAGQIGYALVPMIARGIMLGPDQPVILHMLDIEPAA-E----ALNGVKMELIDAA--F-PLLKGVVAT 72 (332)
Q Consensus 1 m~~~~~kI~VtGaaG~IGs~l~~~L~~~~~~~~~~~~~i~l~D~~~~~-~----~~~~~~~dl~~~~--~-~~~~~v~~~ 72 (332)
|+.+.++++||||+|.||.+++..|++.|. +|++.|++... + .+.....++.... . ....|++..
T Consensus 5 m~l~~k~vlVTGas~GIG~aia~~l~~~G~-------~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~ 77 (285)
T 3sc4_A 5 MSLRGKTMFISGGSRGIGLAIAKRVAADGA-------NVALVAKSAEPHPKLPGTIYTAAKEIEEAGGQALPIVGDIRDG 77 (285)
T ss_dssp -CCTTCEEEEESCSSHHHHHHHHHHHTTTC-------EEEEEESCCSCCSSSCCCHHHHHHHHHHHTSEEEEEECCTTSH
T ss_pred cCCCCCEEEEECCCCHHHHHHHHHHHHCCC-------EEEEEECChhhhhhhhHHHHHHHHHHHhcCCcEEEEECCCCCH
Confidence 455667899999999999999999999885 89999986421 0 1222222222211 0 112344433
Q ss_pred CCHHHHh-------CCCcEEEEecCCCCCC---CCChh---HHHhhhHHHHHHHHHHHHhhcC--CCcEEEEEeCChhhH
Q 019990 73 TDVVEAC-------KDVNIAVMVGGFPRKE---GMERK---DVMSKNVSIYKAQASALEKHAA--PNCKVLVVANPANTN 137 (332)
Q Consensus 73 ~~~~~a~-------~~aDiVi~~ag~~~~~---~~~~~---~~~~~N~~~~~~i~~~i~~~~~--~~~~viv~snp~~~~ 137 (332)
.++.+.+ ...|++|+.||..... ..+.+ ..++.|+.....+.+++...-. ..+++|++|+.....
T Consensus 78 ~~v~~~~~~~~~~~g~id~lvnnAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~m~~~~~g~iv~isS~~~~~ 157 (285)
T 3sc4_A 78 DAVAAAVAKTVEQFGGIDICVNNASAINLGSIEEVPLKRFDLMNGIQVRGTYAVSQSCIPHMKGRDNPHILTLSPPIRLE 157 (285)
T ss_dssp HHHHHHHHHHHHHHSCCSEEEECCCCCCCCCTTTSCHHHHHHHHHHHHHHHHHHHHHHGGGTTTSSSCEEEECCCCCCCS
T ss_pred HHHHHHHHHHHHHcCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCcEEEEECChhhcc
Confidence 3333333 3789999999974321 22322 3566888888888887766521 235777777643211
Q ss_pred HHHHHHHCCCCCCCcEEEeecccHHHHHHHHHHHcCCCCCCeee
Q 019990 138 ALILKEFAPSIPAKNITCLTRLDHNRAMGQISERLKVHVSDVKN 181 (332)
Q Consensus 138 ~~~~~~~~~~~~~~~i~~~t~l~~~r~~~~~a~~~~v~~~~v~~ 181 (332)
...+....|+.+|.....+.+.+++.++ +..|+.
T Consensus 158 --------~~~~~~~~Y~asKaal~~~~~~la~e~~--~~gI~v 191 (285)
T 3sc4_A 158 --------PKWLRPTPYMMAKYGMTLCALGIAEELR--DAGIAS 191 (285)
T ss_dssp --------GGGSCSHHHHHHHHHHHHHHHHHHHHTG--GGTCEE
T ss_pred --------CCCCCCchHHHHHHHHHHHHHHHHHHhc--ccCcEE
Confidence 0012223567777777788888888764 345664
|
| >3tox_A Short chain dehydrogenase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, oxidoreductase; HET: NAP; 1.93A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=98.58 E-value=4.9e-08 Score=87.53 Aligned_cols=164 Identities=12% Similarity=0.028 Sum_probs=98.5
Q ss_pred CCcEEEEEcCCChhHHHHHHHHHhcccCCCCCCeEEEEEecccchhhhhhhHhhhhhhc---cCCccceEEeCCHHHHh-
Q 019990 4 NPLRVLVTGAAGQIGYALVPMIARGIMLGPDQPVILHMLDIEPAAEALNGVKMELIDAA---FPLLKGVVATTDVVEAC- 79 (332)
Q Consensus 4 ~~~kI~VtGaaG~IGs~l~~~L~~~~~~~~~~~~~i~l~D~~~~~~~~~~~~~dl~~~~---~~~~~~v~~~~~~~~a~- 79 (332)
+.++++||||+|+||.+++..|++.|. +|++.|++. +.+.....++.... .....|++...++.+.+
T Consensus 7 ~gk~vlVTGas~GIG~aia~~la~~G~-------~V~~~~r~~--~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~ 77 (280)
T 3tox_A 7 EGKIAIVTGASSGIGRAAALLFAREGA-------KVVVTARNG--NALAELTDEIAGGGGEAAALAGDVGDEALHEALVE 77 (280)
T ss_dssp TTCEEEESSTTSHHHHHHHHHHHHTTC-------EEEECCSCH--HHHHHHHHHHTTTTCCEEECCCCTTCHHHHHHHHH
T ss_pred CCCEEEEECCCcHHHHHHHHHHHHCCC-------EEEEEECCH--HHHHHHHHHHHhcCCcEEEEECCCCCHHHHHHHHH
Confidence 356899999999999999999999886 899999864 23433333332211 11223444433333333
Q ss_pred ------CCCcEEEEecCCCCCC----CCCh---hHHHhhhHHHHHHHHHHHHhhc--CCCcEEEEEeCChhhHHHHHHHH
Q 019990 80 ------KDVNIAVMVGGFPRKE----GMER---KDVMSKNVSIYKAQASALEKHA--APNCKVLVVANPANTNALILKEF 144 (332)
Q Consensus 80 ------~~aDiVi~~ag~~~~~----~~~~---~~~~~~N~~~~~~i~~~i~~~~--~~~~~viv~snp~~~~~~~~~~~ 144 (332)
...|++|+.||..... ..+. ...++.|+.....+.+++..+- ...+++|++|+.....
T Consensus 78 ~~~~~~g~iD~lvnnAg~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~~~g~iv~isS~~~~~------- 150 (280)
T 3tox_A 78 LAVRRFGGLDTAFNNAGALGAMGEISSLSVEGWRETLDTNLTSAFLAAKYQVPAIAALGGGSLTFTSSFVGHT------- 150 (280)
T ss_dssp HHHHHHSCCCEEEECCCCCCSCSCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHTTCEEEEEECCSBTTT-------
T ss_pred HHHHHcCCCCEEEECCCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCCEEEEEcChhhCc-------
Confidence 3789999999964211 1222 2356778776666555543321 1245777777643210
Q ss_pred CCCCCCCcEEEeecccHHHHHHHHHHHcCCCCCCeeeeEEEec
Q 019990 145 APSIPAKNITCLTRLDHNRAMGQISERLKVHVSDVKNVIIWGN 187 (332)
Q Consensus 145 ~~~~~~~~i~~~t~l~~~r~~~~~a~~~~v~~~~v~~~~V~G~ 187 (332)
.+.+....|+.+|.....+.+.++..++ +..|+. +.+.+
T Consensus 151 -~~~~~~~~Y~asKaa~~~l~~~la~e~~--~~gIrv-n~v~P 189 (280)
T 3tox_A 151 -AGFAGVAPYAASKAGLIGLVQALAVELG--ARGIRV-NALLP 189 (280)
T ss_dssp -BCCTTCHHHHHHHHHHHHHHHHHHHHHH--TTTEEE-EEEEE
T ss_pred -CCCCCchhHHHHHHHHHHHHHHHHHHhh--hcCeEE-EEEEE
Confidence 1234444678888888888888888874 345664 33443
|
| >3ek2_A Enoyl-(acyl-carrier-protein) reductase (NADH); ssgcid, oxidoreductase, structural genomics; 1.90A {Burkholderia pseudomallei 1710B} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=98.57 E-value=5.9e-08 Score=86.02 Aligned_cols=157 Identities=15% Similarity=0.162 Sum_probs=96.7
Q ss_pred CCcEEEEEcCC--ChhHHHHHHHHHhcccCCCCCCeEEEEEecccchhhhhhhHhhhhhh--cc-CCccceEEeCCHHHH
Q 019990 4 NPLRVLVTGAA--GQIGYALVPMIARGIMLGPDQPVILHMLDIEPAAEALNGVKMELIDA--AF-PLLKGVVATTDVVEA 78 (332)
Q Consensus 4 ~~~kI~VtGaa--G~IGs~l~~~L~~~~~~~~~~~~~i~l~D~~~~~~~~~~~~~dl~~~--~~-~~~~~v~~~~~~~~a 78 (332)
+.++|+||||+ |+||.+++..|++.|. +|++.+++.. ......++... .. .+..|++...++.+.
T Consensus 13 ~~k~vlITGa~~~~giG~~ia~~l~~~G~-------~V~~~~r~~~---~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~ 82 (271)
T 3ek2_A 13 DGKRILLTGLLSNRSIAYGIAKACKREGA-------ELAFTYVGDR---FKDRITEFAAEFGSELVFPCDVADDAQIDAL 82 (271)
T ss_dssp TTCEEEECCCCSTTSHHHHHHHHHHHTTC-------EEEEEESSGG---GHHHHHHHHHHTTCCCEEECCTTCHHHHHHH
T ss_pred CCCEEEEeCCCCCCcHHHHHHHHHHHcCC-------CEEEEecchh---hHHHHHHHHHHcCCcEEEECCCCCHHHHHHH
Confidence 46899999998 9999999999999885 8999987631 11122222111 01 112344443334333
Q ss_pred hC-------CCcEEEEecCCCCC-----C--C-CCh---hHHHhhhHHHHHHHHHHHHhhcCCCcEEEEEeCChhhHHHH
Q 019990 79 CK-------DVNIAVMVGGFPRK-----E--G-MER---KDVMSKNVSIYKAQASALEKHAAPNCKVLVVANPANTNALI 140 (332)
Q Consensus 79 ~~-------~aDiVi~~ag~~~~-----~--~-~~~---~~~~~~N~~~~~~i~~~i~~~~~~~~~viv~snp~~~~~~~ 140 (332)
++ ..|++|+.||.... + . .+. ...++.|+.....+.+.+..+-.+.+++|++|+....
T Consensus 83 ~~~~~~~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~g~iv~isS~~~~---- 158 (271)
T 3ek2_A 83 FASLKTHWDSLDGLVHSIGFAPREAIAGDFLDGLTRENFRIAHDISAYSFPALAKAALPMLSDDASLLTLSYLGAE---- 158 (271)
T ss_dssp HHHHHHHCSCEEEEEECCCCCCGGGGSSCTTTTCCHHHHHHHHHHHTTHHHHHHHHHGGGEEEEEEEEEEECGGGT----
T ss_pred HHHHHHHcCCCCEEEECCccCccccccCccccccCHHHHHHHHhhhHHHHHHHHHHHHHHhccCceEEEEeccccc----
Confidence 33 67999999997431 1 1 222 2356778887888888777653224567777754321
Q ss_pred HHHHCCCCCCCcEEEeecccHHHHHHHHHHHcCCCCCCeee
Q 019990 141 LKEFAPSIPAKNITCLTRLDHNRAMGQISERLKVHVSDVKN 181 (332)
Q Consensus 141 ~~~~~~~~~~~~i~~~t~l~~~r~~~~~a~~~~v~~~~v~~ 181 (332)
.+.+....|+.+|.....+...+++.++ +..|+.
T Consensus 159 -----~~~~~~~~Y~asKaa~~~~~~~la~e~~--~~gi~v 192 (271)
T 3ek2_A 159 -----RAIPNYNTMGLAKAALEASVRYLAVSLG--AKGVRV 192 (271)
T ss_dssp -----SBCTTTTHHHHHHHHHHHHHHHHHHHHH--TTTCEE
T ss_pred -----cCCCCccchhHHHHHHHHHHHHHHHHHH--hcCcEE
Confidence 1234444677888888888888888764 344553
|
| >2ekp_A 2-deoxy-D-gluconate 3-dehydrogenase; structural genomics, NPPSFA, nation project on protein structural and functional analyses; HET: NAD; 1.15A {Thermus thermophilus} PDB: 1x1e_A* 2ekq_A | Back alignment and structure |
|---|
Probab=98.57 E-value=1.1e-07 Score=83.07 Aligned_cols=148 Identities=14% Similarity=0.114 Sum_probs=89.2
Q ss_pred cEEEEEcCCChhHHHHHHHHHhcccCCCCCCeEEEEEecccchhhhhhhHhhhhhhccCCccceEEeCCHHH-------H
Q 019990 6 LRVLVTGAAGQIGYALVPMIARGIMLGPDQPVILHMLDIEPAAEALNGVKMELIDAAFPLLKGVVATTDVVE-------A 78 (332)
Q Consensus 6 ~kI~VtGaaG~IGs~l~~~L~~~~~~~~~~~~~i~l~D~~~~~~~~~~~~~dl~~~~~~~~~~v~~~~~~~~-------a 78 (332)
++++||||+|+||++++..|++.|. +|++.|++.. .+ ..++. ......|++. .+..+ .
T Consensus 3 k~vlVTGas~giG~~~a~~l~~~G~-------~V~~~~r~~~--~~---~~~~~--~~~~~~D~~~-~~~~~~~~~~~~~ 67 (239)
T 2ekp_A 3 RKALVTGGSRGIGRAIAEALVARGY-------RVAIASRNPE--EA---AQSLG--AVPLPTDLEK-DDPKGLVKRALEA 67 (239)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTC-------EEEEEESSCH--HH---HHHHT--CEEEECCTTT-SCHHHHHHHHHHH
T ss_pred CEEEEeCCCcHHHHHHHHHHHHCCC-------EEEEEeCCHH--HH---HHhhC--cEEEecCCch-HHHHHHHHHHHHH
Confidence 5799999999999999999999885 8999998642 11 11121 1111223333 33322 2
Q ss_pred hCCCcEEEEecCCCCCC---CCCh---hHHHhhhHHHHHHHHHHH----HhhcCCCcEEEEEeCChhhHHHHHHHHCCCC
Q 019990 79 CKDVNIAVMVGGFPRKE---GMER---KDVMSKNVSIYKAQASAL----EKHAAPNCKVLVVANPANTNALILKEFAPSI 148 (332)
Q Consensus 79 ~~~aDiVi~~ag~~~~~---~~~~---~~~~~~N~~~~~~i~~~i----~~~~~~~~~viv~snp~~~~~~~~~~~~~~~ 148 (332)
+.+.|++|+.||..... ..+. ...+..|+.....+.+.+ ++.+ ..++|++|+.... .+.
T Consensus 68 ~g~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~N~~~~~~~~~~~~~~~~~~~--~g~iv~isS~~~~---------~~~ 136 (239)
T 2ekp_A 68 LGGLHVLVHAAAVNVRKPALELSYEEWRRVLYLHLDVAFLLAQAAAPHMAEAG--WGRVLFIGSVTTF---------TAG 136 (239)
T ss_dssp HTSCCEEEECCCCCCCCCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHT--CEEEEEECCGGGT---------SCC
T ss_pred cCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcC--CcEEEEECchhhc---------cCC
Confidence 34799999999874321 1222 234566766665555544 4432 3577777764321 112
Q ss_pred --CCCcEEEeecccHHHHHHHHHHHcCCCCCCeee
Q 019990 149 --PAKNITCLTRLDHNRAMGQISERLKVHVSDVKN 181 (332)
Q Consensus 149 --~~~~i~~~t~l~~~r~~~~~a~~~~v~~~~v~~ 181 (332)
++...|+.+|.....+.+.+++.+. +..|+.
T Consensus 137 ~~~~~~~Y~~sK~a~~~~~~~la~e~~--~~gi~v 169 (239)
T 2ekp_A 137 GPVPIPAYTTAKTALLGLTRALAKEWA--RLGIRV 169 (239)
T ss_dssp TTSCCHHHHHHHHHHHHHHHHHHHHHG--GGTEEE
T ss_pred CCCCCccHHHHHHHHHHHHHHHHHHhh--hcCcEE
Confidence 3334678888888888888888764 334553
|
| >3tsc_A Putative oxidoreductase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, nucleotide; HET: NAD; 2.05A {Mycobacterium avium subsp} SCOP: c.2.1.0 | Back alignment and structure |
|---|
Probab=98.56 E-value=3e-07 Score=82.09 Aligned_cols=159 Identities=14% Similarity=0.100 Sum_probs=95.0
Q ss_pred CCcEEEEEcCCChhHHHHHHHHHhcccCCCCCCeEEEEEeccc-----------chhhhhhhHhhhhhhcc---CCccce
Q 019990 4 NPLRVLVTGAAGQIGYALVPMIARGIMLGPDQPVILHMLDIEP-----------AAEALNGVKMELIDAAF---PLLKGV 69 (332)
Q Consensus 4 ~~~kI~VtGaaG~IGs~l~~~L~~~~~~~~~~~~~i~l~D~~~-----------~~~~~~~~~~dl~~~~~---~~~~~v 69 (332)
+.++++||||+|.||.+++..|++.|. +|+++|++. +.+.+......+..... ....|+
T Consensus 10 ~~k~~lVTGas~GIG~a~a~~la~~G~-------~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~ 82 (277)
T 3tsc_A 10 EGRVAFITGAARGQGRAHAVRMAAEGA-------DIIAVDIAGKLPSCVPYDPASPDDLSETVRLVEAANRRIVAAVVDT 82 (277)
T ss_dssp TTCEEEEESTTSHHHHHHHHHHHHTTC-------EEEEEECCSCCCTTCCSCCCCHHHHHHHHHHHHHTTCCEEEEECCT
T ss_pred CCCEEEEECCccHHHHHHHHHHHHcCC-------EEEEEeccccccccccccccCHHHHHHHHHHHHhcCCeEEEEECCC
Confidence 357899999999999999999999886 899998731 11222222222222110 111344
Q ss_pred EEeCCHHHHh-------CCCcEEEEecCCCCCC---CCChh---HHHhhhHHHHHHHHHH----HHhhcCCCcEEEEEeC
Q 019990 70 VATTDVVEAC-------KDVNIAVMVGGFPRKE---GMERK---DVMSKNVSIYKAQASA----LEKHAAPNCKVLVVAN 132 (332)
Q Consensus 70 ~~~~~~~~a~-------~~aDiVi~~ag~~~~~---~~~~~---~~~~~N~~~~~~i~~~----i~~~~~~~~~viv~sn 132 (332)
+...++.+.+ ...|++|+.||..... ..+.+ ..++.|+.....+.++ +.+.. ..+++|++|+
T Consensus 83 ~~~~~v~~~~~~~~~~~g~id~lvnnAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~~-~~g~iv~isS 161 (277)
T 3tsc_A 83 RDFDRLRKVVDDGVAALGRLDIIVANAGVAAPQAWDDITPEDFRDVMDINVTGTWNTVMAGAPRIIEGG-RGGSIILISS 161 (277)
T ss_dssp TCHHHHHHHHHHHHHHHSCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHT-SCEEEEEECC
T ss_pred CCHHHHHHHHHHHHHHcCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHhHHHHHHHHHHHHHHHHhcC-CCCEEEEEcc
Confidence 3333333333 3689999999975322 12222 3467777665555444 44443 3467787776
Q ss_pred ChhhHHHHHHHHCCCCCCCcEEEeecccHHHHHHHHHHHcCCCCCCeee
Q 019990 133 PANTNALILKEFAPSIPAKNITCLTRLDHNRAMGQISERLKVHVSDVKN 181 (332)
Q Consensus 133 p~~~~~~~~~~~~~~~~~~~i~~~t~l~~~r~~~~~a~~~~v~~~~v~~ 181 (332)
.... .+.+....|+.+|.....+.+.+++.++ +..|+.
T Consensus 162 ~~~~---------~~~~~~~~Y~asKaa~~~~~~~la~e~~--~~gi~v 199 (277)
T 3tsc_A 162 AAGM---------KMQPFMIHYTASKHAVTGLARAFAAELG--KHSIRV 199 (277)
T ss_dssp GGGT---------SCCSSCHHHHHHHHHHHHHHHHHHHHHG--GGTEEE
T ss_pred HhhC---------CCCCCchhhHHHHHHHHHHHHHHHHHhC--ccCeEE
Confidence 4321 2233334678888888888888888875 445664
|
| >3kvo_A Hydroxysteroid dehydrogenase-like protein 2; HSDL2, human hydroxysteroid dehydrogenase like 2, SDHL2, STR genomics, structural genomics consortium; HET: NAP; 2.25A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.56 E-value=4.8e-07 Score=83.60 Aligned_cols=160 Identities=14% Similarity=0.115 Sum_probs=98.3
Q ss_pred CcEEEEEcCCChhHHHHHHHHHhcccCCCCCCeEEEEEecccch-hh----hhhhHhhhhhhc---cCCccceEEeCCHH
Q 019990 5 PLRVLVTGAAGQIGYALVPMIARGIMLGPDQPVILHMLDIEPAA-EA----LNGVKMELIDAA---FPLLKGVVATTDVV 76 (332)
Q Consensus 5 ~~kI~VtGaaG~IGs~l~~~L~~~~~~~~~~~~~i~l~D~~~~~-~~----~~~~~~dl~~~~---~~~~~~v~~~~~~~ 76 (332)
.++|+||||+|.||.+++..|++.|. +|++++++... +. +.....++.... ..+..|++...++.
T Consensus 45 gk~vlVTGas~GIG~aia~~La~~Ga-------~Vvl~~r~~~~~~~l~~~l~~~~~~~~~~g~~~~~~~~Dv~d~~~v~ 117 (346)
T 3kvo_A 45 GCTVFITGASRGIGKAIALKAAKDGA-------NIVIAAKTAQPHPKLLGTIYTAAEEIEAVGGKALPCIVDVRDEQQIS 117 (346)
T ss_dssp TCEEEEETTTSHHHHHHHHHHHTTTC-------EEEEEESCCSCCSSSCCCHHHHHHHHHHTTCEEEEEECCTTCHHHHH
T ss_pred CCEEEEeCCChHHHHHHHHHHHHCCC-------EEEEEECChhhhhhhHHHHHHHHHHHHhcCCeEEEEEccCCCHHHHH
Confidence 46899999999999999999999885 89999986421 01 112222222211 11123444433333
Q ss_pred HHh-------CCCcEEEEecCCCCCC---CCCh---hHHHhhhHHHHHHHHHHHHhhc--CCCcEEEEEeCChhhHHHHH
Q 019990 77 EAC-------KDVNIAVMVGGFPRKE---GMER---KDVMSKNVSIYKAQASALEKHA--APNCKVLVVANPANTNALIL 141 (332)
Q Consensus 77 ~a~-------~~aDiVi~~ag~~~~~---~~~~---~~~~~~N~~~~~~i~~~i~~~~--~~~~~viv~snp~~~~~~~~ 141 (332)
+++ -+.|++|+.||..... ..+. ...++.|+.....+.+.+..+- ....+||++|++.....
T Consensus 118 ~~~~~~~~~~g~iDilVnnAG~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~lp~m~~~~~g~IV~iSS~~~~~~--- 194 (346)
T 3kvo_A 118 AAVEKAIKKFGGIDILVNNASAISLTNTLDTPTKRLDLMMNVNTRGTYLASKACIPYLKKSKVAHILNISPPLNLNP--- 194 (346)
T ss_dssp HHHHHHHHHHSCCCEEEECCCCCCCCCTTTCCHHHHHHHHHHTHHHHHHHHHHHHHHHTTCSSCEEEEECCCCCCCG---
T ss_pred HHHHHHHHHcCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHCCCCEEEEECCHHHcCC---
Confidence 333 3789999999974321 1222 2356788888777777664432 12357888887543210
Q ss_pred HHHCCCCCCCcEEEeecccHHHHHHHHHHHcCCCCCCeee
Q 019990 142 KEFAPSIPAKNITCLTRLDHNRAMGQISERLKVHVSDVKN 181 (332)
Q Consensus 142 ~~~~~~~~~~~i~~~t~l~~~r~~~~~a~~~~v~~~~v~~ 181 (332)
..++....|+.+|.....+.+.+++.++ ..|+.
T Consensus 195 ----~~~~~~~~Y~aSKaal~~l~~~la~e~~---~gIrv 227 (346)
T 3kvo_A 195 ----VWFKQHCAYTIAKYGMSMYVLGMAEEFK---GEIAV 227 (346)
T ss_dssp ----GGTSSSHHHHHHHHHHHHHHHHHHHHTT---TTCEE
T ss_pred ----CCCCCchHHHHHHHHHHHHHHHHHHHhc---CCcEE
Confidence 0023334578888888888899999987 44664
|
| >3ezl_A Acetoacetyl-COA reductase; ssgcid, acetyacetyl-COA reductase, oxidoreductase, structural genomics; HET: P4C; 2.25A {Burkholderia pseudomallei 1710B} SCOP: c.2.1.0 | Back alignment and structure |
|---|
Probab=98.56 E-value=1e-07 Score=83.85 Aligned_cols=157 Identities=11% Similarity=0.074 Sum_probs=93.6
Q ss_pred CCcEEEEEcCCChhHHHHHHHHHhcccCCCCCCeEEEEEecccchhhhhhhHhhhhhhcc---CCccceEEeCCHHHHhC
Q 019990 4 NPLRVLVTGAAGQIGYALVPMIARGIMLGPDQPVILHMLDIEPAAEALNGVKMELIDAAF---PLLKGVVATTDVVEACK 80 (332)
Q Consensus 4 ~~~kI~VtGaaG~IGs~l~~~L~~~~~~~~~~~~~i~l~D~~~~~~~~~~~~~dl~~~~~---~~~~~v~~~~~~~~a~~ 80 (332)
+.++|+||||+|+||++++..|++.|. +|++.+.... +.......++..... ....|++...++.++++
T Consensus 12 ~~k~vlITGas~giG~~ia~~l~~~G~-------~v~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~ 83 (256)
T 3ezl_A 12 SQRIAYVTGGMGGIGTSICQRLHKDGF-------RVVAGCGPNS-PRRVKWLEDQKALGFDFYASEGNVGDWDSTKQAFD 83 (256)
T ss_dssp -CEEEEETTTTSHHHHHHHHHHHHTTE-------EEEEEECTTC-SSHHHHHHHHHHTTCCCEEEECCTTCHHHHHHHHH
T ss_pred CCCEEEEECCCChHHHHHHHHHHHCCC-------EEEEEeCCCH-HHHHHHHHHHHhcCCeeEEEecCCCCHHHHHHHHH
Confidence 467899999999999999999999885 7888774321 222222223322111 11234433333333333
Q ss_pred -------CCcEEEEecCCCCCC---CCCh---hHHHhhhHHHHHHH----HHHHHhhcCCCcEEEEEeCChhhHHHHHHH
Q 019990 81 -------DVNIAVMVGGFPRKE---GMER---KDVMSKNVSIYKAQ----ASALEKHAAPNCKVLVVANPANTNALILKE 143 (332)
Q Consensus 81 -------~aDiVi~~ag~~~~~---~~~~---~~~~~~N~~~~~~i----~~~i~~~~~~~~~viv~snp~~~~~~~~~~ 143 (332)
..|++||.||..... ..+. ...++.|+.....+ ++.+.+.. .+++|++|+....
T Consensus 84 ~~~~~~g~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~~--~g~iv~isS~~~~------- 154 (256)
T 3ezl_A 84 KVKAEVGEIDVLVNNAGITRDVVFRKMTREDWQAVIDTNLTSLFNVTKQVIDGMVERG--WGRIINISSVNGQ------- 154 (256)
T ss_dssp HHHHHTCCEEEEEECCCCCCCCCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHT--CEEEEEECCCCGG-------
T ss_pred HHHHhcCCCCEEEECCCCCCCCchhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcC--CCEEEEEcchhhc-------
Confidence 679999999975321 1222 23567787765444 44445543 4577877764332
Q ss_pred HCCCCCCCcEEEeecccHHHHHHHHHHHcCCCCCCeee
Q 019990 144 FAPSIPAKNITCLTRLDHNRAMGQISERLKVHVSDVKN 181 (332)
Q Consensus 144 ~~~~~~~~~i~~~t~l~~~r~~~~~a~~~~v~~~~v~~ 181 (332)
.+.+....|+.+|.....+...+++.+. +..++.
T Consensus 155 --~~~~~~~~Y~asK~a~~~~~~~la~e~~--~~gi~v 188 (256)
T 3ezl_A 155 --KGQFGQTNYSTAKAGIHGFTMSLAQEVA--TKGVTV 188 (256)
T ss_dssp --GSCSCCHHHHHHHHHHHHHHHHHHHHHG--GGTEEE
T ss_pred --cCCCCCcccHHHHHHHHHHHHHHHHHHH--HhCCEE
Confidence 1234444678888888888888888764 345664
|
| >2r6j_A Eugenol synthase 1; phenylpropene, PIP reductase, short-chain dehydrogenase/reductase, plant protein; HET: NDP; 1.50A {Ocimum basilicum} PDB: 2qys_A 2qx7_A* 2qzz_A* 2r2g_A* 3c3x_A* 2qw8_A* | Back alignment and structure |
|---|
Probab=98.54 E-value=7.4e-08 Score=87.51 Aligned_cols=94 Identities=15% Similarity=0.121 Sum_probs=62.0
Q ss_pred cEEEEEcCCChhHHHHHHHHHhcccCCCCCCeEEEEEecccchhhhhhhHhhhhhhcc-CCccceEEeCCHHHHhCCCcE
Q 019990 6 LRVLVTGAAGQIGYALVPMIARGIMLGPDQPVILHMLDIEPAAEALNGVKMELIDAAF-PLLKGVVATTDVVEACKDVNI 84 (332)
Q Consensus 6 ~kI~VtGaaG~IGs~l~~~L~~~~~~~~~~~~~i~l~D~~~~~~~~~~~~~dl~~~~~-~~~~~v~~~~~~~~a~~~aDi 84 (332)
++|+||||+|++|++++..|++.|. +|++++++.. .... ...++..... ....|+....++.++++++|+
T Consensus 12 ~~ilVtGatG~iG~~l~~~L~~~g~-------~V~~l~R~~~-~~~~-~~~~l~~~~v~~v~~Dl~d~~~l~~a~~~~d~ 82 (318)
T 2r6j_A 12 SKILIFGGTGYIGNHMVKGSLKLGH-------PTYVFTRPNS-SKTT-LLDEFQSLGAIIVKGELDEHEKLVELMKKVDV 82 (318)
T ss_dssp CCEEEETTTSTTHHHHHHHHHHTTC-------CEEEEECTTC-SCHH-HHHHHHHTTCEEEECCTTCHHHHHHHHTTCSE
T ss_pred CeEEEECCCchHHHHHHHHHHHCCC-------cEEEEECCCC-chhh-HHHHhhcCCCEEEEecCCCHHHHHHHHcCCCE
Confidence 4899999999999999999998875 7888887642 1111 1111211111 112345444567788999999
Q ss_pred EEEecCCCCCCCCChhHHHhhhHHHHHHHHHHHHhhc
Q 019990 85 AVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEKHA 121 (332)
Q Consensus 85 Vi~~ag~~~~~~~~~~~~~~~N~~~~~~i~~~i~~~~ 121 (332)
|||+++... ....+++++++++.+
T Consensus 83 vi~~a~~~~-------------~~~~~~l~~aa~~~g 106 (318)
T 2r6j_A 83 VISALAFPQ-------------ILDQFKILEAIKVAG 106 (318)
T ss_dssp EEECCCGGG-------------STTHHHHHHHHHHHC
T ss_pred EEECCchhh-------------hHHHHHHHHHHHhcC
Confidence 999987531 123467788888764
|
| >3ucx_A Short chain dehydrogenase; ssgcid, seattle structural genomics center for infectious DI dehydrogenase, oxidoreductase; HET: 1PE; 1.85A {Mycobacterium smegmatis} SCOP: c.2.1.0 | Back alignment and structure |
|---|
Probab=98.54 E-value=7.5e-08 Score=85.43 Aligned_cols=158 Identities=11% Similarity=0.036 Sum_probs=94.8
Q ss_pred CCcEEEEEcCCChhHHHHHHHHHhcccCCCCCCeEEEEEecccchhhhhhhHhhhhhhcc---CCccceEEeCCHHHHh-
Q 019990 4 NPLRVLVTGAAGQIGYALVPMIARGIMLGPDQPVILHMLDIEPAAEALNGVKMELIDAAF---PLLKGVVATTDVVEAC- 79 (332)
Q Consensus 4 ~~~kI~VtGaaG~IGs~l~~~L~~~~~~~~~~~~~i~l~D~~~~~~~~~~~~~dl~~~~~---~~~~~v~~~~~~~~a~- 79 (332)
+.++++||||+|+||++++..|++.|. +|++.|++. +.+.....++..... ....|++...++.+.+
T Consensus 10 ~~k~vlVTGas~gIG~aia~~l~~~G~-------~V~~~~r~~--~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~ 80 (264)
T 3ucx_A 10 TDKVVVISGVGPALGTTLARRCAEQGA-------DLVLAARTV--ERLEDVAKQVTDTGRRALSVGTDITDDAQVAHLVD 80 (264)
T ss_dssp TTCEEEEESCCTTHHHHHHHHHHHTTC-------EEEEEESCH--HHHHHHHHHHHHTTCCEEEEECCTTCHHHHHHHHH
T ss_pred CCcEEEEECCCcHHHHHHHHHHHHCcC-------EEEEEeCCH--HHHHHHHHHHHhcCCcEEEEEcCCCCHHHHHHHHH
Confidence 357899999999999999999999886 899999853 334433334432111 1123444433333333
Q ss_pred ------CCCcEEEEecCCCCC--C--CCChh---HHHhhhHHHHHHHHHHHHhhc-CCCcEEEEEeCChhhHHHHHHHHC
Q 019990 80 ------KDVNIAVMVGGFPRK--E--GMERK---DVMSKNVSIYKAQASALEKHA-APNCKVLVVANPANTNALILKEFA 145 (332)
Q Consensus 80 ------~~aDiVi~~ag~~~~--~--~~~~~---~~~~~N~~~~~~i~~~i~~~~-~~~~~viv~snp~~~~~~~~~~~~ 145 (332)
...|++||.||.... + ..+.+ ..+..|+.....+.+++...- ...+++|++|+....
T Consensus 81 ~~~~~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~g~iv~isS~~~~--------- 151 (264)
T 3ucx_A 81 ETMKAYGRVDVVINNAFRVPSMKPFANTTFEHMRDAIELTVFGALRLIQGFTPALEESKGAVVNVNSMVVR--------- 151 (264)
T ss_dssp HHHHHTSCCSEEEECCCSCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHTHHHHHHHTCEEEEECCGGGG---------
T ss_pred HHHHHcCCCcEEEECCCCCCCCCCchhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCEEEEECcchhc---------
Confidence 378999999986321 1 12222 346677776666655543321 012577777764321
Q ss_pred CCCCCCcEEEeecccHHHHHHHHHHHcCCCCCCeee
Q 019990 146 PSIPAKNITCLTRLDHNRAMGQISERLKVHVSDVKN 181 (332)
Q Consensus 146 ~~~~~~~i~~~t~l~~~r~~~~~a~~~~v~~~~v~~ 181 (332)
.+.+....|+.+|.....+.+.+++.++ +..|+.
T Consensus 152 ~~~~~~~~Y~asKaa~~~~~~~la~e~~--~~gi~v 185 (264)
T 3ucx_A 152 HSQAKYGAYKMAKSALLAMSQTLATELG--EKGIRV 185 (264)
T ss_dssp CCCTTCHHHHHHHHHHHHHHHHHHHHHH--TTTCEE
T ss_pred cCCCccHHHHHHHHHHHHHHHHHHHHhC--ccCeEE
Confidence 2233344677788877888888888764 344553
|
| >3l77_A Short-chain alcohol dehydrogenase; oxidoreductase; HET: NJP PG4; 1.60A {Thermococcus sibiricus} SCOP: c.2.1.0 PDB: 3tn7_A* | Back alignment and structure |
|---|
Probab=98.54 E-value=2.8e-07 Score=79.96 Aligned_cols=146 Identities=18% Similarity=0.157 Sum_probs=83.1
Q ss_pred CcEEEEEcCCChhHHHHHHHHHhcccCCCCCCeEEEEEecccchhhhhhhHhhhhh-hc--c-CCccceEEeCCHHHHhC
Q 019990 5 PLRVLVTGAAGQIGYALVPMIARGIMLGPDQPVILHMLDIEPAAEALNGVKMELID-AA--F-PLLKGVVATTDVVEACK 80 (332)
Q Consensus 5 ~~kI~VtGaaG~IGs~l~~~L~~~~~~~~~~~~~i~l~D~~~~~~~~~~~~~dl~~-~~--~-~~~~~v~~~~~~~~a~~ 80 (332)
+++++||||+|+||++++..|++.|. +|++.+++. +.+.....++.. .. . ....|++...++.++++
T Consensus 2 ~k~vlITGas~gIG~~ia~~l~~~G~-------~V~~~~r~~--~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~ 72 (235)
T 3l77_A 2 MKVAVITGASRGIGEAIARALARDGY-------ALALGARSV--DRLEKIAHELMQEQGVEVFYHHLDVSKAESVEEFSK 72 (235)
T ss_dssp CCEEEEESCSSHHHHHHHHHHHHTTC-------EEEEEESCH--HHHHHHHHHHHHHHCCCEEEEECCTTCHHHHHHHCC
T ss_pred CCEEEEECCCcHHHHHHHHHHHHCCC-------EEEEEeCCH--HHHHHHHHHHHhhcCCeEEEEEeccCCHHHHHHHHH
Confidence 56899999999999999999999885 899999864 334333333321 11 1 11234444334444443
Q ss_pred -------CCcEEEEecCCCCCC---CCChh---HHHhhhHHHHHHHHHHHHhhc-CCCcEEEEEeCChhhHHHHHHHHCC
Q 019990 81 -------DVNIAVMVGGFPRKE---GMERK---DVMSKNVSIYKAQASALEKHA-APNCKVLVVANPANTNALILKEFAP 146 (332)
Q Consensus 81 -------~aDiVi~~ag~~~~~---~~~~~---~~~~~N~~~~~~i~~~i~~~~-~~~~~viv~snp~~~~~~~~~~~~~ 146 (332)
..|++||.||..... ..+.+ ..++.|+.....+.+.+..+- .....++++++.... .
T Consensus 73 ~~~~~~g~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~~ii~~sS~~~~---------~ 143 (235)
T 3l77_A 73 KVLERFGDVDVVVANAGLGYFKRLEELSEEEFHEMIEVNLLGVWRTLKAFLDSLKRTGGLALVTTSDVSA---------R 143 (235)
T ss_dssp -HHHHHSSCSEEEECCCCCCCCCTTTSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEECCGGGS---------S
T ss_pred HHHHhcCCCCEEEECCccccccCcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCcEEEEecchhc---------c
Confidence 789999999974321 12222 356678776666655554321 012355665543321 1
Q ss_pred CCCCCcEEEeecccHHHHHHHH
Q 019990 147 SIPAKNITCLTRLDHNRAMGQI 168 (332)
Q Consensus 147 ~~~~~~i~~~t~l~~~r~~~~~ 168 (332)
+.+....|+.+|.....+.+.+
T Consensus 144 ~~~~~~~Y~~sKaa~~~~~~~l 165 (235)
T 3l77_A 144 LIPYGGGYVSTKWAARALVRTF 165 (235)
T ss_dssp CCTTCHHHHHHHHHHHHHHHHH
T ss_pred cCCCcchHHHHHHHHHHHHHHH
Confidence 1222234566666555555555
|
| >3t7c_A Carveol dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: NAD; 1.95A {Mycobacterium avium} | Back alignment and structure |
|---|
Probab=98.54 E-value=2.3e-07 Score=83.90 Aligned_cols=160 Identities=12% Similarity=0.082 Sum_probs=95.4
Q ss_pred CCcEEEEEcCCChhHHHHHHHHHhcccCCCCCCeEEEEEecccc----------hhhhhhhHhhhhhhcc---CCccceE
Q 019990 4 NPLRVLVTGAAGQIGYALVPMIARGIMLGPDQPVILHMLDIEPA----------AEALNGVKMELIDAAF---PLLKGVV 70 (332)
Q Consensus 4 ~~~kI~VtGaaG~IGs~l~~~L~~~~~~~~~~~~~i~l~D~~~~----------~~~~~~~~~dl~~~~~---~~~~~v~ 70 (332)
+.++++||||+|.||.+++..|++.|. +|+++|++.. .+.+.....++..... ....|++
T Consensus 27 ~gk~~lVTGas~GIG~aia~~la~~G~-------~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~ 99 (299)
T 3t7c_A 27 EGKVAFITGAARGQGRSHAITLAREGA-------DIIAIDVCKQLDGVKLPMSTPDDLAETVRQVEALGRRIIASQVDVR 99 (299)
T ss_dssp TTCEEEEESTTSHHHHHHHHHHHHTTC-------EEEEEECCSCCTTCCSCCCCHHHHHHHHHHHHHTTCCEEEEECCTT
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHCCC-------EEEEEecccccccccccccCHHHHHHHHHHHHhcCCceEEEECCCC
Confidence 356899999999999999999999886 8999987521 1222222223322111 1123444
Q ss_pred EeCCHHHHh-------CCCcEEEEecCCCCCC----CCCh---hHHHhhhHHHHHHHHHHHHhh---cCCCcEEEEEeCC
Q 019990 71 ATTDVVEAC-------KDVNIAVMVGGFPRKE----GMER---KDVMSKNVSIYKAQASALEKH---AAPNCKVLVVANP 133 (332)
Q Consensus 71 ~~~~~~~a~-------~~aDiVi~~ag~~~~~----~~~~---~~~~~~N~~~~~~i~~~i~~~---~~~~~~viv~snp 133 (332)
...++.+++ ...|++|+.||..... ..+. ...+..|+.....+.+++..+ ....++||++|+.
T Consensus 100 ~~~~v~~~~~~~~~~~g~iD~lv~nAg~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~~~~g~Iv~isS~ 179 (299)
T 3t7c_A 100 DFDAMQAAVDDGVTQLGRLDIVLANAALASEGTRLNRMDPKTWRDMIDVNLNGAWITARVAIPHIMAGKRGGSIVFTSSI 179 (299)
T ss_dssp CHHHHHHHHHHHHHHHSCCCEEEECCCCCCCCCCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHTTSCEEEEEECCG
T ss_pred CHHHHHHHHHHHHHHhCCCCEEEECCCCCCCCCchhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCCcEEEEECCh
Confidence 333333333 3789999999874321 1222 235677876666665554332 1134677777763
Q ss_pred hhhHHHHHHHHCCCCCCCcEEEeecccHHHHHHHHHHHcCCCCCCeee
Q 019990 134 ANTNALILKEFAPSIPAKNITCLTRLDHNRAMGQISERLKVHVSDVKN 181 (332)
Q Consensus 134 ~~~~~~~~~~~~~~~~~~~i~~~t~l~~~r~~~~~a~~~~v~~~~v~~ 181 (332)
... .+.+....|+.+|.....+.+.++..++ +..|+.
T Consensus 180 ~~~---------~~~~~~~~Y~asKaa~~~l~~~la~e~~--~~gI~v 216 (299)
T 3t7c_A 180 GGL---------RGAENIGNYIASKHGLHGLMRTMALELG--PRNIRV 216 (299)
T ss_dssp GGT---------SCCTTCHHHHHHHHHHHHHHHHHHHHHG--GGTEEE
T ss_pred hhc---------cCCCCcchHHHHHHHHHHHHHHHHHHhc--ccCcEE
Confidence 321 2233344678888888888888888874 345664
|
| >3o38_A Short chain dehydrogenase; tuberculosis, ortholog from A non-pathogenic dehydrogenase, structural genomics; 1.95A {Mycobacterium smegmatis} | Back alignment and structure |
|---|
Probab=98.54 E-value=1.9e-07 Score=82.65 Aligned_cols=158 Identities=15% Similarity=0.054 Sum_probs=94.9
Q ss_pred CCcEEEEEcCCCh-hHHHHHHHHHhcccCCCCCCeEEEEEecccchhhhhhhHhhhhhhc---c-CCccceEEeCCHHHH
Q 019990 4 NPLRVLVTGAAGQ-IGYALVPMIARGIMLGPDQPVILHMLDIEPAAEALNGVKMELIDAA---F-PLLKGVVATTDVVEA 78 (332)
Q Consensus 4 ~~~kI~VtGaaG~-IGs~l~~~L~~~~~~~~~~~~~i~l~D~~~~~~~~~~~~~dl~~~~---~-~~~~~v~~~~~~~~a 78 (332)
+.++|+||||+|+ ||++++..|++.|. +|+++|++. +.+.....++.... . ....|++...++.++
T Consensus 21 ~~k~vlITGasg~GIG~~~a~~l~~~G~-------~V~~~~r~~--~~~~~~~~~l~~~~~~~~~~~~~Dl~~~~~v~~~ 91 (266)
T 3o38_A 21 KGKVVLVTAAAGTGIGSTTARRALLEGA-------DVVISDYHE--RRLGETRDQLADLGLGRVEAVVCDVTSTEAVDAL 91 (266)
T ss_dssp TTCEEEESSCSSSSHHHHHHHHHHHTTC-------EEEEEESCH--HHHHHHHHHHHTTCSSCEEEEECCTTCHHHHHHH
T ss_pred CCCEEEEECCCCCchHHHHHHHHHHCCC-------EEEEecCCH--HHHHHHHHHHHhcCCCceEEEEeCCCCHHHHHHH
Confidence 4578999998885 99999999999885 899999864 23333333332211 0 112344433333333
Q ss_pred h-------CCCcEEEEecCCCCCC---CCCh---hHHHhhhHHHHHHHHHHHHhhc---CCCcEEEEEeCChhhHHHHHH
Q 019990 79 C-------KDVNIAVMVGGFPRKE---GMER---KDVMSKNVSIYKAQASALEKHA---APNCKVLVVANPANTNALILK 142 (332)
Q Consensus 79 ~-------~~aDiVi~~ag~~~~~---~~~~---~~~~~~N~~~~~~i~~~i~~~~---~~~~~viv~snp~~~~~~~~~ 142 (332)
+ ...|++||.||..... ..+. ...++.|+.....+.+.+..+- ....+++++|+....
T Consensus 92 ~~~~~~~~g~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~~iv~~sS~~~~------ 165 (266)
T 3o38_A 92 ITQTVEKAGRLDVLVNNAGLGGQTPVVDMTDEEWDRVLNVTLTSVMRATRAALRYFRGVDHGGVIVNNASVLGW------ 165 (266)
T ss_dssp HHHHHHHHSCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHTSSCCEEEEEECCGGGT------
T ss_pred HHHHHHHhCCCcEEEECCCcCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCeEEEEeCCHHHc------
Confidence 3 3679999999974321 1222 2346677766666666554431 134566776653321
Q ss_pred HHCCCCCCCcEEEeecccHHHHHHHHHHHcCCCCCCeee
Q 019990 143 EFAPSIPAKNITCLTRLDHNRAMGQISERLKVHVSDVKN 181 (332)
Q Consensus 143 ~~~~~~~~~~i~~~t~l~~~r~~~~~a~~~~v~~~~v~~ 181 (332)
.+.+....|+.+|.....+.+.+++.+. +..|+.
T Consensus 166 ---~~~~~~~~Y~~sKaa~~~~~~~la~e~~--~~gi~v 199 (266)
T 3o38_A 166 ---RAQHSQSHYAAAKAGVMALTRCSAIEAV--EFGVRI 199 (266)
T ss_dssp ---CCCTTCHHHHHHHHHHHHHHHHHHHHHG--GGTEEE
T ss_pred ---CCCCCCchHHHHHHHHHHHHHHHHHHHH--HcCcEE
Confidence 2334444678888888888888888764 344653
|
| >1o5i_A 3-oxoacyl-(acyl carrier protein) reductase; TM1169, structur genomics, JCSG, PSI, protein structure initiative, joint CE structural genomics; HET: NAD; 2.50A {Thermotoga maritima} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=98.53 E-value=2.3e-07 Score=81.57 Aligned_cols=148 Identities=14% Similarity=0.158 Sum_probs=88.5
Q ss_pred CCcEEEEEcCCChhHHHHHHHHHhcccCCCCCCeEEEEEecccchhhhhhhHhhhhhhccCCccceEEeCCHHH---HhC
Q 019990 4 NPLRVLVTGAAGQIGYALVPMIARGIMLGPDQPVILHMLDIEPAAEALNGVKMELIDAAFPLLKGVVATTDVVE---ACK 80 (332)
Q Consensus 4 ~~~kI~VtGaaG~IGs~l~~~L~~~~~~~~~~~~~i~l~D~~~~~~~~~~~~~dl~~~~~~~~~~v~~~~~~~~---a~~ 80 (332)
+.++|+||||+|+||++++..|++.|. +|+++|++. +.+. ++... ... .|+ ..+..+ .+.
T Consensus 18 ~~k~vlVTGas~gIG~~~a~~l~~~G~-------~V~~~~r~~--~~~~----~~~~~-~~~-~D~--~~~~~~~~~~~~ 80 (249)
T 1o5i_A 18 RDKGVLVLAASRGIGRAVADVLSQEGA-------EVTICARNE--ELLK----RSGHR-YVV-CDL--RKDLDLLFEKVK 80 (249)
T ss_dssp TTCEEEEESCSSHHHHHHHHHHHHTTC-------EEEEEESCH--HHHH----HTCSE-EEE-CCT--TTCHHHHHHHSC
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHCCC-------EEEEEcCCH--HHHH----hhCCe-EEE-eeH--HHHHHHHHHHhc
Confidence 357899999999999999999999885 899999853 1111 11110 111 333 223333 344
Q ss_pred CCcEEEEecCCCCCC---CCCh---hHHHhhhHHHH----HHHHHHHHhhcCCCcEEEEEeCChhhHHHHHHHHCCCCCC
Q 019990 81 DVNIAVMVGGFPRKE---GMER---KDVMSKNVSIY----KAQASALEKHAAPNCKVLVVANPANTNALILKEFAPSIPA 150 (332)
Q Consensus 81 ~aDiVi~~ag~~~~~---~~~~---~~~~~~N~~~~----~~i~~~i~~~~~~~~~viv~snp~~~~~~~~~~~~~~~~~ 150 (332)
+.|+|||.||..... ..+. ...+..|+... +.+++.+++.+ ..++|++|+.... .+.+.
T Consensus 81 ~iD~lv~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~--~g~iv~isS~~~~---------~~~~~ 149 (249)
T 1o5i_A 81 EVDILVLNAGGPKAGFFDELTNEDFKEAIDSLFLNMIKIVRNYLPAMKEKG--WGRIVAITSFSVI---------SPIEN 149 (249)
T ss_dssp CCSEEEECCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHT--CEEEEEECCGGGT---------SCCTT
T ss_pred CCCEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcC--CcEEEEEcchHhc---------CCCCC
Confidence 899999999974321 1122 23455666553 45556666553 3577777763221 12333
Q ss_pred CcEEEeecccHHHHHHHHHHHcCCCCCCeee
Q 019990 151 KNITCLTRLDHNRAMGQISERLKVHVSDVKN 181 (332)
Q Consensus 151 ~~i~~~t~l~~~r~~~~~a~~~~v~~~~v~~ 181 (332)
...|+.+|.....+.+.+++.+. +..|+.
T Consensus 150 ~~~Y~~sK~a~~~~~~~la~e~~--~~gi~v 178 (249)
T 1o5i_A 150 LYTSNSARMALTGFLKTLSFEVA--PYGITV 178 (249)
T ss_dssp BHHHHHHHHHHHHHHHHHHHHHG--GGTEEE
T ss_pred CchHHHHHHHHHHHHHHHHHHhh--hcCeEE
Confidence 33567777777777777777754 344553
|
| >2zcu_A Uncharacterized oxidoreductase YTFG; alpha-beta sandwich; 1.80A {Escherichia coli} PDB: 2zcv_A* | Back alignment and structure |
|---|
Probab=98.53 E-value=8.2e-08 Score=85.59 Aligned_cols=139 Identities=9% Similarity=0.083 Sum_probs=83.2
Q ss_pred EEEEEcCCChhHHHHHHHHHhc--ccCCCCCCeEEEEEecccchhhhhhhHhhhhhhcc-CCccceEEeCCHHHHhCCCc
Q 019990 7 RVLVTGAAGQIGYALVPMIARG--IMLGPDQPVILHMLDIEPAAEALNGVKMELIDAAF-PLLKGVVATTDVVEACKDVN 83 (332)
Q Consensus 7 kI~VtGaaG~IGs~l~~~L~~~--~~~~~~~~~~i~l~D~~~~~~~~~~~~~dl~~~~~-~~~~~v~~~~~~~~a~~~aD 83 (332)
||+||||+||||++++..|++. +. +|++++++.. ... ++..... ....|+....++.++++++|
T Consensus 1 ~ilVtGatG~iG~~l~~~L~~~~~g~-------~V~~~~r~~~--~~~----~~~~~~~~~~~~D~~d~~~~~~~~~~~d 67 (286)
T 2zcu_A 1 MIAITGATGQLGHYVIESLMKTVPAS-------QIVAIVRNPA--KAQ----ALAAQGITVRQADYGDEAALTSALQGVE 67 (286)
T ss_dssp CEEEESTTSHHHHHHHHHHTTTSCGG-------GEEEEESCTT--TCH----HHHHTTCEEEECCTTCHHHHHHHTTTCS
T ss_pred CEEEEcCCchHHHHHHHHHHhhCCCc-------eEEEEEcChH--hhh----hhhcCCCeEEEcCCCCHHHHHHHHhCCC
Confidence 5899999999999999999886 65 7888887542 221 1111111 11234444455677889999
Q ss_pred EEEEecCCCCCCCCChhHHHhhhHHHHHHHHHHHHhhcCCCcEEEEEeCChhhHHHHHHHHCCCCCCCcEEEeecccHHH
Q 019990 84 IAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEKHAAPNCKVLVVANPANTNALILKEFAPSIPAKNITCLTRLDHNR 163 (332)
Q Consensus 84 iVi~~ag~~~~~~~~~~~~~~~N~~~~~~i~~~i~~~~~~~~~viv~snp~~~~~~~~~~~~~~~~~~~i~~~t~l~~~r 163 (332)
+|||+|+... ..|+..++++++++++.+ . .++|++|..... . .. ..|+.++...++
T Consensus 68 ~vi~~a~~~~----------~~~~~~~~~l~~a~~~~~-~-~~~v~~Ss~~~~------~--~~----~~y~~sK~~~e~ 123 (286)
T 2zcu_A 68 KLLLISSSEV----------GQRAPQHRNVINAAKAAG-V-KFIAYTSLLHAD------T--SP----LGLADEHIETEK 123 (286)
T ss_dssp EEEECC------------------CHHHHHHHHHHHHT-C-CEEEEEEETTTT------T--CC----STTHHHHHHHHH
T ss_pred EEEEeCCCCc----------hHHHHHHHHHHHHHHHcC-C-CEEEEECCCCCC------C--Cc----chhHHHHHHHHH
Confidence 9999998531 136778889999998875 2 366666653210 0 11 123555555554
Q ss_pred HHHHHHHHcCCCCCCeeeeEEEec
Q 019990 164 AMGQISERLKVHVSDVKNVIIWGN 187 (332)
Q Consensus 164 ~~~~~a~~~~v~~~~v~~~~V~G~ 187 (332)
+. +..+++...+|.. ++|+
T Consensus 124 ~~----~~~~~~~~ilrp~-~~~~ 142 (286)
T 2zcu_A 124 ML----ADSGIVYTLLRNG-WYSE 142 (286)
T ss_dssp HH----HHHCSEEEEEEEC-CBHH
T ss_pred HH----HHcCCCeEEEeCh-HHhh
Confidence 43 3357777777764 3454
|
| >1gz6_A Estradiol 17 beta-dehydrogenase 4; 17BETA-HSD4, MFE-2, beta-oxidation, peroxisome, SDR, steroid biosynthesis, oxidoreductase, NADP; HET: NAI; 2.38A {Rattus norvegicus} SCOP: c.2.1.2 PDB: 1zbq_A* | Back alignment and structure |
|---|
Probab=98.53 E-value=1.9e-07 Score=85.37 Aligned_cols=158 Identities=13% Similarity=0.108 Sum_probs=92.6
Q ss_pred CCcEEEEEcCCChhHHHHHHHHHhcccCCCCCCeEEEEEeccc-------chhhhhhhHhhhhhhccCCccceEEeCCHH
Q 019990 4 NPLRVLVTGAAGQIGYALVPMIARGIMLGPDQPVILHMLDIEP-------AAEALNGVKMELIDAAFPLLKGVVATTDVV 76 (332)
Q Consensus 4 ~~~kI~VtGaaG~IGs~l~~~L~~~~~~~~~~~~~i~l~D~~~-------~~~~~~~~~~dl~~~~~~~~~~v~~~~~~~ 76 (332)
+.++|+||||+|+||.+++..|++.|. +|++.|+.. +.+.+.....++.........++....+..
T Consensus 8 ~gk~~lVTGas~GIG~~~a~~La~~Ga-------~Vv~~~~~~~~~~~~R~~~~~~~~~~~l~~~~~~~~~D~~~~~~~~ 80 (319)
T 1gz6_A 8 DGRVVLVTGAGGGLGRAYALAFAERGA-------LVVVNDLGGDFKGVGKGSSAADKVVEEIRRRGGKAVANYDSVEAGE 80 (319)
T ss_dssp TTCEEEETTTTSHHHHHHHHHHHHTTC-------EEEEECCCBCTTSCBCCSHHHHHHHHHHHHTTCEEEEECCCGGGHH
T ss_pred CCCEEEEeCCCcHHHHHHHHHHHHCCC-------EEEEEcCCcccccccCCHHHHHHHHHHHHhhCCeEEEeCCCHHHHH
Confidence 457899999999999999999999885 888887631 112232222333221100112232222222
Q ss_pred HH-------hCCCcEEEEecCCCCCC---CCCh---hHHHhhhHHHHHHHHHHH----HhhcCCCcEEEEEeCChhhHHH
Q 019990 77 EA-------CKDVNIAVMVGGFPRKE---GMER---KDVMSKNVSIYKAQASAL----EKHAAPNCKVLVVANPANTNAL 139 (332)
Q Consensus 77 ~a-------~~~aDiVi~~ag~~~~~---~~~~---~~~~~~N~~~~~~i~~~i----~~~~~~~~~viv~snp~~~~~~ 139 (332)
+. +...|++|+.||..... ..+. ...+..|+.....+.+.+ ++.. ..+||++|+....
T Consensus 81 ~~~~~~~~~~g~iD~lVnnAG~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~m~~~~--~grIV~vsS~~~~--- 155 (319)
T 1gz6_A 81 KLVKTALDTFGRIDVVVNNAGILRDRSFSRISDEDWDIIQRVHLRGSFQVTRAAWDHMKKQN--YGRIIMTASASGI--- 155 (319)
T ss_dssp HHHHHHHHHTSCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT--CEEEEEECCHHHH---
T ss_pred HHHHHHHHHcCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcC--CCEEEEECChhhc---
Confidence 22 34789999999975432 1222 235677877765555544 4432 4577777763221
Q ss_pred HHHHHCCCCCCCcEEEeecccHHHHHHHHHHHcCCCCCCeee
Q 019990 140 ILKEFAPSIPAKNITCLTRLDHNRAMGQISERLKVHVSDVKN 181 (332)
Q Consensus 140 ~~~~~~~~~~~~~i~~~t~l~~~r~~~~~a~~~~v~~~~v~~ 181 (332)
. +.+....|+.+|.....+.+.+++.+. +..|+.
T Consensus 156 ----~--~~~~~~~Y~aSK~a~~~~~~~la~el~--~~gI~v 189 (319)
T 1gz6_A 156 ----Y--GNFGQANYSAAKLGLLGLANTLVIEGR--KNNIHC 189 (319)
T ss_dssp ----H--CCTTCHHHHHHHHHHHHHHHHHHHHTG--GGTEEE
T ss_pred ----c--CCCCCHHHHHHHHHHHHHHHHHHHHhc--ccCEEE
Confidence 1 223334678888888888888888764 345664
|
| >4imr_A 3-oxoacyl-(acyl-carrier-protein) reductase; oxidoreductase, nicotinamide adenine dinucleotide phosphate, structural genomics; HET: NAP; 1.96A {Agrobacterium fabrum} | Back alignment and structure |
|---|
Probab=98.53 E-value=5.1e-07 Score=80.60 Aligned_cols=156 Identities=12% Similarity=0.094 Sum_probs=95.3
Q ss_pred CCcEEEEEcCCChhHHHHHHHHHhcccCCCCCCeEEEEEecccchhhhhhhHhhhhhhcc---CCccceEEeCCHHHHhC
Q 019990 4 NPLRVLVTGAAGQIGYALVPMIARGIMLGPDQPVILHMLDIEPAAEALNGVKMELIDAAF---PLLKGVVATTDVVEACK 80 (332)
Q Consensus 4 ~~~kI~VtGaaG~IGs~l~~~L~~~~~~~~~~~~~i~l~D~~~~~~~~~~~~~dl~~~~~---~~~~~v~~~~~~~~a~~ 80 (332)
+.++++||||+|+||.+++..|++.|. +|++.|++. +.+.....++..... ....|++...+..+.++
T Consensus 32 ~gk~~lVTGas~GIG~aia~~la~~G~-------~V~~~~r~~--~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~~~~~~~ 102 (275)
T 4imr_A 32 RGRTALVTGSSRGIGAAIAEGLAGAGA-------HVILHGVKP--GSTAAVQQRIIASGGTAQELAGDLSEAGAGTDLIE 102 (275)
T ss_dssp TTCEEEETTCSSHHHHHHHHHHHHTTC-------EEEEEESST--TTTHHHHHHHHHTTCCEEEEECCTTSTTHHHHHHH
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHCCC-------EEEEEcCCH--HHHHHHHHHHHhcCCeEEEEEecCCCHHHHHHHHH
Confidence 457899999999999999999999885 899999864 233333333322110 11234433333333332
Q ss_pred ------CCcEEEEecCCCCCC---CCChh---HHHhhhHHHHHHHHHHH----HhhcCCCcEEEEEeCChhhHHHHHHHH
Q 019990 81 ------DVNIAVMVGGFPRKE---GMERK---DVMSKNVSIYKAQASAL----EKHAAPNCKVLVVANPANTNALILKEF 144 (332)
Q Consensus 81 ------~aDiVi~~ag~~~~~---~~~~~---~~~~~N~~~~~~i~~~i----~~~~~~~~~viv~snp~~~~~~~~~~~ 144 (332)
..|++|+.||..... ..+.+ ..++.|+.....+.+++ ++. ..+++|++|+....
T Consensus 103 ~~~~~g~iD~lvnnAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~m~~~--~~g~Iv~isS~~~~-------- 172 (275)
T 4imr_A 103 RAEAIAPVDILVINASAQINATLSALTPNDLAFQLAVNLGSTVDMLQSALPKMVAR--KWGRVVSIGSINQL-------- 172 (275)
T ss_dssp HHHHHSCCCEEEECCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHH--TCEEEEEECCGGGT--------
T ss_pred HHHHhCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhc--CCcEEEEECCHHhC--------
Confidence 689999999974321 12222 34667776665555554 443 24677777763321
Q ss_pred CCCCCCCcEEEeecccHHHHHHHHHHHcCCCCCCeee
Q 019990 145 APSIPAKNITCLTRLDHNRAMGQISERLKVHVSDVKN 181 (332)
Q Consensus 145 ~~~~~~~~i~~~t~l~~~r~~~~~a~~~~v~~~~v~~ 181 (332)
.+.+....|+.+|.....+.+.++..++ +..|+.
T Consensus 173 -~~~~~~~~Y~asKaa~~~l~~~la~e~~--~~gI~v 206 (275)
T 4imr_A 173 -RPKSVVTAYAATKAAQHNLIQSQARDFA--GDNVLL 206 (275)
T ss_dssp -SCCTTBHHHHHHHHHHHHHHHHHHHHHG--GGTEEE
T ss_pred -CCCCCchhhHHHHHHHHHHHHHHHHHhc--ccCcEE
Confidence 1122233478888888888888888875 445664
|
| >3oec_A Carveol dehydrogenase (mytha.01326.C, A0R518 HOMO; ssgcid, structural genomics; 1.95A {Mycobacterium thermoresistibile} | Back alignment and structure |
|---|
Probab=98.53 E-value=1.1e-07 Score=86.76 Aligned_cols=159 Identities=13% Similarity=0.127 Sum_probs=94.0
Q ss_pred CCcEEEEEcCCChhHHHHHHHHHhcccCCCCCCeEEEEEecccc----------hhhhhhhHhhhhhhcc---CCccceE
Q 019990 4 NPLRVLVTGAAGQIGYALVPMIARGIMLGPDQPVILHMLDIEPA----------AEALNGVKMELIDAAF---PLLKGVV 70 (332)
Q Consensus 4 ~~~kI~VtGaaG~IGs~l~~~L~~~~~~~~~~~~~i~l~D~~~~----------~~~~~~~~~dl~~~~~---~~~~~v~ 70 (332)
+.++++||||+|+||.+++..|++.|. +|+++|++.. .+.+......+..... ....|++
T Consensus 45 ~gk~~lVTGas~GIG~aia~~la~~G~-------~Vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~ 117 (317)
T 3oec_A 45 QGKVAFITGAARGQGRTHAVRLAQDGA-------DIVAIDLCRQQPNLDYAQGSPEELKETVRLVEEQGRRIIARQADVR 117 (317)
T ss_dssp TTCEEEESSCSSHHHHHHHHHHHHTTC-------EEEEEECCCCCTTCCSCCCCHHHHHHHHHHHHHTTCCEEEEECCTT
T ss_pred CCCEEEEeCCCcHHHHHHHHHHHHCCC-------eEEEEecccccccccccccCHHHHHHHHHHHHhcCCeEEEEECCCC
Confidence 346899999999999999999999886 8999887521 1122222222211110 1123443
Q ss_pred EeCCHHHHh-------CCCcEEEEecCCCCCC---CCChh---HHHhhhHHHHHHHHHHHH----hhcCCCcEEEEEeCC
Q 019990 71 ATTDVVEAC-------KDVNIAVMVGGFPRKE---GMERK---DVMSKNVSIYKAQASALE----KHAAPNCKVLVVANP 133 (332)
Q Consensus 71 ~~~~~~~a~-------~~aDiVi~~ag~~~~~---~~~~~---~~~~~N~~~~~~i~~~i~----~~~~~~~~viv~snp 133 (332)
...++.+.+ ...|++|+.||..... ..+.+ ..++.|+.....+.+++. +.. ..++||++|+.
T Consensus 118 d~~~v~~~~~~~~~~~g~iD~lVnnAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~m~~~~-~~g~Iv~isS~ 196 (317)
T 3oec_A 118 DLASLQAVVDEALAEFGHIDILVSNVGISNQGEVVSLTDQQWSDILQTNLIGAWHACRAVLPSMIERG-QGGSVIFVSST 196 (317)
T ss_dssp CHHHHHHHHHHHHHHHSCCCEEEECCCCCCCBCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHTC-SCEEEEEECCG
T ss_pred CHHHHHHHHHHHHHHcCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHcC-CCCEEEEECcH
Confidence 333333333 3789999999975321 12222 356778776666555553 332 34677777764
Q ss_pred hhhHHHHHHHHCCCCCCCcEEEeecccHHHHHHHHHHHcCCCCCCeee
Q 019990 134 ANTNALILKEFAPSIPAKNITCLTRLDHNRAMGQISERLKVHVSDVKN 181 (332)
Q Consensus 134 ~~~~~~~~~~~~~~~~~~~i~~~t~l~~~r~~~~~a~~~~v~~~~v~~ 181 (332)
... .+.+....|+.+|.....+.+.++..++ +..|+.
T Consensus 197 ~~~---------~~~~~~~~Y~asKaa~~~l~~~la~e~~--~~gI~v 233 (317)
T 3oec_A 197 VGL---------RGAPGQSHYAASKHGVQGLMLSLANEVG--RHNIRV 233 (317)
T ss_dssp GGS---------SCCTTBHHHHHHHHHHHHHHHHHHHHHG--GGTEEE
T ss_pred Hhc---------CCCCCCcchHHHHHHHHHHHHHHHHHHh--hcCeEE
Confidence 321 2233334678888888888888888864 334553
|
| >1qyc_A Phenylcoumaran benzylic ether reductase PT1; NADPH-dependent aromatic alcohol reductases, pcber, PLR, IFR, lignans, isoflavonoids, plant protein; 2.20A {Pinus taeda} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=98.53 E-value=8.5e-08 Score=86.52 Aligned_cols=99 Identities=19% Similarity=0.186 Sum_probs=62.9
Q ss_pred CCCCCcEEEEEcCCChhHHHHHHHHHhcccCCCCCCeEEEEEecccch----hhhhhhHhhhhhhcc-CCccceEEeCCH
Q 019990 1 MAKNPLRVLVTGAAGQIGYALVPMIARGIMLGPDQPVILHMLDIEPAA----EALNGVKMELIDAAF-PLLKGVVATTDV 75 (332)
Q Consensus 1 m~~~~~kI~VtGaaG~IGs~l~~~L~~~~~~~~~~~~~i~l~D~~~~~----~~~~~~~~dl~~~~~-~~~~~v~~~~~~ 75 (332)
|+ ++++|+||||+|++|++++..|++.|. +|++++++... ++.. ....+..... ....|+....++
T Consensus 1 M~-~~~~ilVtGatG~iG~~l~~~L~~~g~-------~V~~l~R~~~~~~~~~~~~-~~~~l~~~~v~~v~~D~~d~~~l 71 (308)
T 1qyc_A 1 MG-SRSRILLIGATGYIGRHVAKASLDLGH-------PTFLLVRESTASSNSEKAQ-LLESFKASGANIVHGSIDDHASL 71 (308)
T ss_dssp -C-CCCCEEEESTTSTTHHHHHHHHHHTTC-------CEEEECCCCCTTTTHHHHH-HHHHHHTTTCEEECCCTTCHHHH
T ss_pred CC-CCCEEEEEcCCcHHHHHHHHHHHhCCC-------CEEEEECCcccccCHHHHH-HHHHHHhCCCEEEEeccCCHHHH
Confidence 53 367899999999999999999998875 78888875321 1111 0111211111 112355444567
Q ss_pred HHHhCCCcEEEEecCCCCCCCCChhHHHhhhHHHHHHHHHHHHhhc
Q 019990 76 VEACKDVNIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEKHA 121 (332)
Q Consensus 76 ~~a~~~aDiVi~~ag~~~~~~~~~~~~~~~N~~~~~~i~~~i~~~~ 121 (332)
.++++++|+|||+++... ....+++++++++.+
T Consensus 72 ~~~~~~~d~vi~~a~~~~-------------~~~~~~l~~aa~~~g 104 (308)
T 1qyc_A 72 VEAVKNVDVVISTVGSLQ-------------IESQVNIIKAIKEVG 104 (308)
T ss_dssp HHHHHTCSEEEECCCGGG-------------SGGGHHHHHHHHHHC
T ss_pred HHHHcCCCEEEECCcchh-------------hhhHHHHHHHHHhcC
Confidence 788999999999987532 122357788888764
|
| >2nm0_A Probable 3-oxacyl-(acyl-carrier-protein) reductas; oxidoreductase; 1.99A {Streptomyces coelicolor} | Back alignment and structure |
|---|
Probab=98.52 E-value=1.4e-07 Score=83.14 Aligned_cols=155 Identities=13% Similarity=0.112 Sum_probs=89.8
Q ss_pred CCcEEEEEcCCChhHHHHHHHHHhcccCCCCCCeEEEEEecccchhhhhhhHhhhhhhccCCccceEEeCCHHHH-----
Q 019990 4 NPLRVLVTGAAGQIGYALVPMIARGIMLGPDQPVILHMLDIEPAAEALNGVKMELIDAAFPLLKGVVATTDVVEA----- 78 (332)
Q Consensus 4 ~~~kI~VtGaaG~IGs~l~~~L~~~~~~~~~~~~~i~l~D~~~~~~~~~~~~~dl~~~~~~~~~~v~~~~~~~~a----- 78 (332)
+.++|+||||+|+||.+++..|++.|. +|++.+++.. .+.. . .....|++...++.++
T Consensus 20 ~~k~vlVTGas~gIG~aia~~l~~~G~-------~V~~~~r~~~--~~~~-------~-~~~~~Dl~d~~~v~~~~~~~~ 82 (253)
T 2nm0_A 20 MSRSVLVTGGNRGIGLAIARAFADAGD-------KVAITYRSGE--PPEG-------F-LAVKCDITDTEQVEQAYKEIE 82 (253)
T ss_dssp CCCEEEEETTTSHHHHHHHHHHHHTTC-------EEEEEESSSC--CCTT-------S-EEEECCTTSHHHHHHHHHHHH
T ss_pred CCCEEEEeCCCCHHHHHHHHHHHHCCC-------EEEEEeCChH--hhcc-------c-eEEEecCCCHHHHHHHHHHHH
Confidence 356899999999999999999999885 8888887542 2211 0 0011223222222222
Q ss_pred --hCCCcEEEEecCCCCCC------CCChhHHHhhhHHHHHHHHHHHHhhc--CCCcEEEEEeCChhhHHHHHHHHCCCC
Q 019990 79 --CKDVNIAVMVGGFPRKE------GMERKDVMSKNVSIYKAQASALEKHA--APNCKVLVVANPANTNALILKEFAPSI 148 (332)
Q Consensus 79 --~~~aDiVi~~ag~~~~~------~~~~~~~~~~N~~~~~~i~~~i~~~~--~~~~~viv~snp~~~~~~~~~~~~~~~ 148 (332)
+...|++|+.||..... .......+..|+.....+.+++...- ....++|++|+...... .
T Consensus 83 ~~~g~iD~lv~nAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~m~~~~~g~iv~isS~~~~~~---------~ 153 (253)
T 2nm0_A 83 ETHGPVEVLIANAGVTKDQLLMRMSEEDFTSVVETNLTGTFRVVKRANRAMLRAKKGRVVLISSVVGLLG---------S 153 (253)
T ss_dssp HHTCSCSEEEEECSCCTTTC---CCTTTTHHHHHHHHHHHHHHHHHHHHHHHHHTCEEEEEECCCCCCCC---------H
T ss_pred HHcCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCEEEEECchhhCCC---------C
Confidence 33579999999974321 11223467778877666655443321 02457777775322110 0
Q ss_pred CCCcEEEeecccHHHHHHHHHHHcCCCCCCeeeeEEEec
Q 019990 149 PAKNITCLTRLDHNRAMGQISERLKVHVSDVKNVIIWGN 187 (332)
Q Consensus 149 ~~~~i~~~t~l~~~r~~~~~a~~~~v~~~~v~~~~V~G~ 187 (332)
+....|+.+|.....+.+.+++.++ +..|+. +++.+
T Consensus 154 ~~~~~Y~asK~a~~~~~~~la~e~~--~~gi~v-n~v~P 189 (253)
T 2nm0_A 154 AGQANYAASKAGLVGFARSLARELG--SRNITF-NVVAP 189 (253)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHC--SSSEEE-EEEEE
T ss_pred CCcHHHHHHHHHHHHHHHHHHHHhh--hcCeEE-EEEEe
Confidence 0111345666667777777887765 456774 34454
|
| >2gas_A Isoflavone reductase; NADPH-dependent reductase, oxidoreductase; 1.60A {Medicago sativa} | Back alignment and structure |
|---|
Probab=98.51 E-value=1.7e-07 Score=84.55 Aligned_cols=96 Identities=16% Similarity=0.097 Sum_probs=62.1
Q ss_pred CcEEEEEcCCChhHHHHHHHHHhcccCCCCCCeEEEEEeccc-c---h-hhhhhhHhhhhhhcc-CCccceEEeCCHHHH
Q 019990 5 PLRVLVTGAAGQIGYALVPMIARGIMLGPDQPVILHMLDIEP-A---A-EALNGVKMELIDAAF-PLLKGVVATTDVVEA 78 (332)
Q Consensus 5 ~~kI~VtGaaG~IGs~l~~~L~~~~~~~~~~~~~i~l~D~~~-~---~-~~~~~~~~dl~~~~~-~~~~~v~~~~~~~~a 78 (332)
|++|+||||+|++|++++..|++.|. +|++++++. . . ++... ..++..... ....|+....++.++
T Consensus 2 ~~~vlVtGatG~iG~~l~~~L~~~g~-------~V~~~~R~~~~~~~~~~~~~~-~~~l~~~~v~~v~~D~~d~~~l~~~ 73 (307)
T 2gas_A 2 ENKILILGPTGAIGRHIVWASIKAGN-------PTYALVRKTITAANPETKEEL-IDNYQSLGVILLEGDINDHETLVKA 73 (307)
T ss_dssp CCCEEEESTTSTTHHHHHHHHHHHTC-------CEEEEECCSCCSSCHHHHHHH-HHHHHHTTCEEEECCTTCHHHHHHH
T ss_pred CcEEEEECCCchHHHHHHHHHHhCCC-------cEEEEECCCcccCChHHHHHH-HHHHHhCCCEEEEeCCCCHHHHHHH
Confidence 56899999999999999999998875 688888753 0 0 11111 112211111 112345444567788
Q ss_pred hCCCcEEEEecCCCCCCCCChhHHHhhhHHHHHHHHHHHHhhc
Q 019990 79 CKDVNIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEKHA 121 (332)
Q Consensus 79 ~~~aDiVi~~ag~~~~~~~~~~~~~~~N~~~~~~i~~~i~~~~ 121 (332)
++++|+|||+++... ....+++++++++.+
T Consensus 74 ~~~~d~vi~~a~~~~-------------~~~~~~l~~aa~~~g 103 (307)
T 2gas_A 74 IKQVDIVICAAGRLL-------------IEDQVKIIKAIKEAG 103 (307)
T ss_dssp HTTCSEEEECSSSSC-------------GGGHHHHHHHHHHHC
T ss_pred HhCCCEEEECCcccc-------------cccHHHHHHHHHhcC
Confidence 999999999998532 122456778887764
|
| >1e7w_A Pteridine reductase; dihydrofolate reductase, shortchain dehydrogenase, methotrexate resistance, oxidoreductase; HET: NDP MTX; 1.75A {Leishmania major} SCOP: c.2.1.2 PDB: 1w0c_A* 1e92_A* 2bf7_A* 2bfa_A* 2bfm_A* 2bfo_A* 2bfp_A* 2p8k_A* 3h4v_A* 2xox_A 1p33_A* | Back alignment and structure |
|---|
Probab=98.50 E-value=6.9e-07 Score=80.38 Aligned_cols=158 Identities=11% Similarity=0.092 Sum_probs=93.7
Q ss_pred CCcEEEEEcCCChhHHHHHHHHHhcccCCCCCCeEEEEEe-cccchhhhhhhHhhhh-h--hcc-CCccceEEeC-----
Q 019990 4 NPLRVLVTGAAGQIGYALVPMIARGIMLGPDQPVILHMLD-IEPAAEALNGVKMELI-D--AAF-PLLKGVVATT----- 73 (332)
Q Consensus 4 ~~~kI~VtGaaG~IGs~l~~~L~~~~~~~~~~~~~i~l~D-~~~~~~~~~~~~~dl~-~--~~~-~~~~~v~~~~----- 73 (332)
+.++++||||+|.||.+++..|++.|. +|++.| ++. +.+.....++. . ... ....|++...
T Consensus 8 ~~k~~lVTGas~GIG~aia~~la~~G~-------~V~~~~~r~~--~~~~~~~~~l~~~~~~~~~~~~~Dl~~~~~~~~~ 78 (291)
T 1e7w_A 8 TVPVALVTGAAKRLGRSIAEGLHAEGY-------AVCLHYHRSA--AEANALSATLNARRPNSAITVQADLSNVATAPVS 78 (291)
T ss_dssp CCCEEEETTCSSHHHHHHHHHHHHTTC-------EEEEEESSCH--HHHHHHHHHHHHHSTTCEEEEECCCSSSCBCCCC
T ss_pred CCCEEEEECCCchHHHHHHHHHHHCCC-------eEEEEcCCCH--HHHHHHHHHHhhhcCCeeEEEEeecCCccccccc
Confidence 456899999999999999999999885 899998 653 23333333332 1 000 1123444333
Q ss_pred ------------CHHHHhC-------CCcEEEEecCCCCCC---CCC--------------hh---HHHhhhHHHHHHHH
Q 019990 74 ------------DVVEACK-------DVNIAVMVGGFPRKE---GME--------------RK---DVMSKNVSIYKAQA 114 (332)
Q Consensus 74 ------------~~~~a~~-------~aDiVi~~ag~~~~~---~~~--------------~~---~~~~~N~~~~~~i~ 114 (332)
++.++++ ..|++|+.||..... ..+ .+ ..+..|+.....+.
T Consensus 79 ~~~~~~~~~~~~~v~~~~~~~~~~~g~iD~lvnnAg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~ 158 (291)
T 1e7w_A 79 GADGSAPVTLFTRCAELVAACYTHWGRCDVLVNNASSFYPTPLLRNDEDGHEPCVGDREAMETATADLFGSNAIAPYFLI 158 (291)
T ss_dssp ----CCCBCHHHHHHHHHHHHHHHHSCCCEEEECCCCCCCCCCCC-------------HHHHHHHHHHHHHHTHHHHHHH
T ss_pred ccccccccchHHHHHHHHHHHHHhcCCCCEEEECCCCCCCCChhhcCccccccccccccccHHHHHHHHHHHhHHHHHHH
Confidence 3433333 789999999874321 112 22 34567776665555
Q ss_pred HHHHhhc--CC------CcEEEEEeCChhhHHHHHHHHCCCCCCCcEEEeecccHHHHHHHHHHHcCCCCCCeee
Q 019990 115 SALEKHA--AP------NCKVLVVANPANTNALILKEFAPSIPAKNITCLTRLDHNRAMGQISERLKVHVSDVKN 181 (332)
Q Consensus 115 ~~i~~~~--~~------~~~viv~snp~~~~~~~~~~~~~~~~~~~i~~~t~l~~~r~~~~~a~~~~v~~~~v~~ 181 (332)
+.+..+- .. ..++|++|+.... .+.+....|+.+|.....+.+.+++.++ +..|+.
T Consensus 159 ~~~~~~m~~~~~~~~~~~g~Iv~isS~~~~---------~~~~~~~~Y~asKaa~~~l~~~la~e~~--~~gI~v 222 (291)
T 1e7w_A 159 KAFAHRVAGTPAKHRGTNYSIINMVDAMTN---------QPLLGYTIYTMAKGALEGLTRSAALELA--PLQIRV 222 (291)
T ss_dssp HHHHHHHHTSCGGGSCSCEEEEEECCTTTT---------SCCTTCHHHHHHHHHHHHHHHHHHHHHG--GGTEEE
T ss_pred HHHHHHHHhcCCCCCCCCcEEEEEechhhc---------CCCCCCchhHHHHHHHHHHHHHHHHHHH--hcCeEE
Confidence 5554321 12 3577777764321 1233344677788877788888887764 345664
|
| >2qhx_A Pteridine reductase 1; oxidoreductase, short-chain dehydrogenase/reductase, trypanosomatid, pterin salvage, drug resistance; HET: NAP FE1; 2.61A {Leishmania major} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=98.50 E-value=3.1e-07 Score=84.16 Aligned_cols=158 Identities=11% Similarity=0.092 Sum_probs=92.7
Q ss_pred CCcEEEEEcCCChhHHHHHHHHHhcccCCCCCCeEEEEEe-cccchhhhhhhHhhhh-h--hcc-CCccceEEeC-----
Q 019990 4 NPLRVLVTGAAGQIGYALVPMIARGIMLGPDQPVILHMLD-IEPAAEALNGVKMELI-D--AAF-PLLKGVVATT----- 73 (332)
Q Consensus 4 ~~~kI~VtGaaG~IGs~l~~~L~~~~~~~~~~~~~i~l~D-~~~~~~~~~~~~~dl~-~--~~~-~~~~~v~~~~----- 73 (332)
+.++++||||+|+||.+++..|++.|. +|+++| ++. +.+.....++. . ... ....|++...
T Consensus 45 ~~k~~lVTGas~GIG~aia~~La~~G~-------~Vv~~~~r~~--~~~~~~~~~l~~~~~~~~~~~~~Dl~d~~~~~~~ 115 (328)
T 2qhx_A 45 TVPVALVTGAAKRLGRSIAEGLHAEGY-------AVCLHYHRSA--AEANALSATLNARRPNSAITVQADLSNVATAPVS 115 (328)
T ss_dssp CCCEEEETTCSSHHHHHHHHHHHHTTC-------EEEEEESSCH--HHHHHHHHHHHHHSTTCEEEEECCCSSSCBCC--
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHCCC-------EEEEEcCCCH--HHHHHHHHHHHhhcCCeEEEEEeeCCCchhcccc
Confidence 346799999999999999999999885 899998 653 23333223332 1 000 1123443333
Q ss_pred ------------CHHHHhC-------CCcEEEEecCCCCCC---CCC--------------hh---HHHhhhHHHHHHHH
Q 019990 74 ------------DVVEACK-------DVNIAVMVGGFPRKE---GME--------------RK---DVMSKNVSIYKAQA 114 (332)
Q Consensus 74 ------------~~~~a~~-------~aDiVi~~ag~~~~~---~~~--------------~~---~~~~~N~~~~~~i~ 114 (332)
++.++++ ..|++|+.||..... ..+ .+ ..+..|+.....+.
T Consensus 116 ~~~~~~~~~~~~~v~~~~~~~~~~~g~iD~lVnnAG~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~vN~~g~~~l~ 195 (328)
T 2qhx_A 116 GADGSAPVTLFTRCAELVAACYTHWGRCDVLVNNASSFYPTPLLRNDEDGHEPCVGDREAMETATADLFGSNAIAPYFLI 195 (328)
T ss_dssp -----CCBCHHHHHHHHHHHHHHHHSCCCEEEECCCCCCCCCSCC-------------CHHHHHHHHHHHHHTHHHHHHH
T ss_pred ccccccccccHHHHHHHHHHHHHhcCCCCEEEECCCCCCCCChhhcCccccccccccccccHHHHHHHHHHHHHHHHHHH
Confidence 3433333 789999999874321 112 22 24567776665555
Q ss_pred HHHHhhc--CC------CcEEEEEeCChhhHHHHHHHHCCCCCCCcEEEeecccHHHHHHHHHHHcCCCCCCeee
Q 019990 115 SALEKHA--AP------NCKVLVVANPANTNALILKEFAPSIPAKNITCLTRLDHNRAMGQISERLKVHVSDVKN 181 (332)
Q Consensus 115 ~~i~~~~--~~------~~~viv~snp~~~~~~~~~~~~~~~~~~~i~~~t~l~~~r~~~~~a~~~~v~~~~v~~ 181 (332)
+.+..+- .. ..+||++|+.... .+.+....|+.+|.....+.+.++..++ +..|+.
T Consensus 196 ~~~~~~m~~~~~~~~~~~g~IV~isS~~~~---------~~~~~~~~Y~asKaal~~l~~~la~el~--~~gIrv 259 (328)
T 2qhx_A 196 KAFAHRVAGTPAKHRGTNYSIINMVDAMTN---------QPLLGYTIYTMAKGALEGLTRSAALELA--PLQIRV 259 (328)
T ss_dssp HHHHHHHHHSCGGGSCSCEEEEEECCTTTT---------SCCTTCHHHHHHHHHHHHHHHHHHHHHG--GGTEEE
T ss_pred HHHHHHHHhcCCcCCCCCcEEEEECchhhc---------cCCCCcHHHHHHHHHHHHHHHHHHHHHh--hcCcEE
Confidence 5544321 12 4577777764321 1233334677788877888888888764 345663
|
| >3uxy_A Short-chain dehydrogenase/reductase SDR; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; HET: NAD; 2.10A {Rhodobacter sphaeroides} | Back alignment and structure |
|---|
Probab=98.49 E-value=7e-08 Score=85.84 Aligned_cols=148 Identities=18% Similarity=0.139 Sum_probs=91.6
Q ss_pred CCcEEEEEcCCChhHHHHHHHHHhcccCCCCCCeEEEEEecccchhhhhhhHhhhhhhccCCccceEEeCC-------HH
Q 019990 4 NPLRVLVTGAAGQIGYALVPMIARGIMLGPDQPVILHMLDIEPAAEALNGVKMELIDAAFPLLKGVVATTD-------VV 76 (332)
Q Consensus 4 ~~~kI~VtGaaG~IGs~l~~~L~~~~~~~~~~~~~i~l~D~~~~~~~~~~~~~dl~~~~~~~~~~v~~~~~-------~~ 76 (332)
+.++|+||||+|+||++++..|++.|. +|++.|++.. .+... .. ...|++...+ ..
T Consensus 27 ~gk~vlVTGas~gIG~aia~~la~~G~-------~V~~~~r~~~--~~~~~----~~----~~~Dv~~~~~~~~~~~~~~ 89 (266)
T 3uxy_A 27 EGKVALVTGAAGGIGGAVVTALRAAGA-------RVAVADRAVA--GIAAD----LH----LPGDLREAAYADGLPGAVA 89 (266)
T ss_dssp TTCEEEESSTTSHHHHHHHHHHHHTTC-------EEEECSSCCT--TSCCS----EE----CCCCTTSHHHHHHHHHHHH
T ss_pred CCCEEEEeCCCcHHHHHHHHHHHHCCC-------EEEEEeCCHH--HHHhh----hc----cCcCCCCHHHHHHHHHHHH
Confidence 357899999999999999999999885 8999987532 11110 00 0112222111 22
Q ss_pred HHhCCCcEEEEecCCCCCC---CCCh---hHHHhhhHHHHHHHHHHH----HhhcCCCcEEEEEeCChhhHHHHHHHHCC
Q 019990 77 EACKDVNIAVMVGGFPRKE---GMER---KDVMSKNVSIYKAQASAL----EKHAAPNCKVLVVANPANTNALILKEFAP 146 (332)
Q Consensus 77 ~a~~~aDiVi~~ag~~~~~---~~~~---~~~~~~N~~~~~~i~~~i----~~~~~~~~~viv~snp~~~~~~~~~~~~~ 146 (332)
+.+...|++|+.||..... ..+. ...++.|+.....+.+++ ++.. .+++|++|+.... .
T Consensus 90 ~~~g~iD~lvnnAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~m~~~~--~g~iv~isS~~~~---------~ 158 (266)
T 3uxy_A 90 AGLGRLDIVVNNAGVISRGRITETTDADWSLSLGVNVEAPFRICRAAIPLMAAAG--GGAIVNVASCWGL---------R 158 (266)
T ss_dssp HHHSCCCEEEECCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHT--CEEEEEECCSBTT---------B
T ss_pred HhcCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcC--CcEEEEECCHHhC---------C
Confidence 2345799999999975321 1222 234667877776666665 4442 4577777764321 1
Q ss_pred CCCCCcEEEeecccHHHHHHHHHHHcCCCCCCeee
Q 019990 147 SIPAKNITCLTRLDHNRAMGQISERLKVHVSDVKN 181 (332)
Q Consensus 147 ~~~~~~i~~~t~l~~~r~~~~~a~~~~v~~~~v~~ 181 (332)
+.+....|+.+|.....+.+.+++.++ +..|+.
T Consensus 159 ~~~~~~~Y~asKaa~~~l~~~la~e~~--~~gI~v 191 (266)
T 3uxy_A 159 PGPGHALYCLTKAALASLTQCMGMDHA--PQGIRI 191 (266)
T ss_dssp CCTTBHHHHHHHHHHHHHHHHHHHHHG--GGTEEE
T ss_pred CCCCChHHHHHHHHHHHHHHHHHHHhh--hcCcEE
Confidence 234444678888888888888888874 345664
|
| >4iiu_A 3-oxoacyl-[acyl-carrier protein] reductase; structural genomics, center for structural genomics of infec diseases, csgid; HET: NAP; 2.10A {Escherichia coli} PDB: 4iiv_A* | Back alignment and structure |
|---|
Probab=98.49 E-value=1.9e-07 Score=82.80 Aligned_cols=157 Identities=13% Similarity=0.085 Sum_probs=92.7
Q ss_pred CcEEEEEcCCChhHHHHHHHHHhcccCCCCCCeEEEEEecccchhhhhhhHhhhhhhc--c-CCccceEEeCCHHHHhC-
Q 019990 5 PLRVLVTGAAGQIGYALVPMIARGIMLGPDQPVILHMLDIEPAAEALNGVKMELIDAA--F-PLLKGVVATTDVVEACK- 80 (332)
Q Consensus 5 ~~kI~VtGaaG~IGs~l~~~L~~~~~~~~~~~~~i~l~D~~~~~~~~~~~~~dl~~~~--~-~~~~~v~~~~~~~~a~~- 80 (332)
.++|+||||+|+||++++..|++.|. ++++.+.+. .+.+.....++.... . ....|++...++.++++
T Consensus 26 ~k~vlVTGas~gIG~~la~~l~~~G~-------~v~i~~~r~-~~~~~~~~~~l~~~~~~~~~~~~Dl~~~~~~~~~~~~ 97 (267)
T 4iiu_A 26 SRSVLVTGASKGIGRAIARQLAADGF-------NIGVHYHRD-AAGAQETLNAIVANGGNGRLLSFDVANREQCREVLEH 97 (267)
T ss_dssp CCEEEETTTTSHHHHHHHHHHHHTTC-------EEEEEESSC-HHHHHHHHHHHHHTTCCEEEEECCTTCHHHHHHHHHH
T ss_pred CCEEEEECCCChHHHHHHHHHHHCCC-------EEEEEeCCc-hHHHHHHHHHHHhcCCceEEEEecCCCHHHHHHHHHH
Confidence 46799999999999999999999886 676655432 123333333332211 0 11234443333333333
Q ss_pred ------CCcEEEEecCCCCCCC---CCh---hHHHhhhHHHHHHHHHHHH----hhcCCCcEEEEEeCChhhHHHHHHHH
Q 019990 81 ------DVNIAVMVGGFPRKEG---MER---KDVMSKNVSIYKAQASALE----KHAAPNCKVLVVANPANTNALILKEF 144 (332)
Q Consensus 81 ------~aDiVi~~ag~~~~~~---~~~---~~~~~~N~~~~~~i~~~i~----~~~~~~~~viv~snp~~~~~~~~~~~ 144 (332)
..|++|+.||...... .+. ...++.|+.....+.+.+. +.. ...++|++|+....
T Consensus 98 ~~~~~g~id~li~nAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~-~~g~iv~isS~~~~-------- 168 (267)
T 4iiu_A 98 EIAQHGAWYGVVSNAGIARDAAFPALSNDDWDAVIHTNLDSFYNVIQPCIMPMIGAR-QGGRIITLSSVSGV-------- 168 (267)
T ss_dssp HHHHHCCCSEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHT-SCEEEEEECCHHHH--------
T ss_pred HHHHhCCccEEEECCCCCCCCccccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcC-CCcEEEEEcchHhc--------
Confidence 7899999999753221 122 2356778777666666542 222 35677777763221
Q ss_pred CCCCCCCcEEEeecccHHHHHHHHHHHcCCCCCCeee
Q 019990 145 APSIPAKNITCLTRLDHNRAMGQISERLKVHVSDVKN 181 (332)
Q Consensus 145 ~~~~~~~~i~~~t~l~~~r~~~~~a~~~~v~~~~v~~ 181 (332)
.+.+....|+.+|.....+...+++.+. +..++.
T Consensus 169 -~~~~~~~~Y~asKaa~~~~~~~la~e~~--~~gi~v 202 (267)
T 4iiu_A 169 -MGNRGQVNYSAAKAGIIGATKALAIELA--KRKITV 202 (267)
T ss_dssp -HCCTTCHHHHHHHHHHHHHHHHHHHHHG--GGTEEE
T ss_pred -cCCCCCchhHHHHHHHHHHHHHHHHHHh--hcCeEE
Confidence 1234444678888877888888888864 334554
|
| >3uve_A Carveol dehydrogenase ((+)-trans-carveol dehydrog; ssgcid, structural genomics, seattle structural genomics CEN infectious disease; HET: NAD PG4; 1.55A {Mycobacterium avium} SCOP: c.2.1.0 PDB: 3uwr_A* | Back alignment and structure |
|---|
Probab=98.48 E-value=4.2e-07 Score=81.43 Aligned_cols=159 Identities=13% Similarity=0.052 Sum_probs=94.5
Q ss_pred CCcEEEEEcCCChhHHHHHHHHHhcccCCCCCCeEEEEEecccc--------------hhhhhhhHhhhhhhcc---CCc
Q 019990 4 NPLRVLVTGAAGQIGYALVPMIARGIMLGPDQPVILHMLDIEPA--------------AEALNGVKMELIDAAF---PLL 66 (332)
Q Consensus 4 ~~~kI~VtGaaG~IGs~l~~~L~~~~~~~~~~~~~i~l~D~~~~--------------~~~~~~~~~dl~~~~~---~~~ 66 (332)
+.++++||||+|.||.+++..|++.|. +|+++|++.. .+.+......+..... ...
T Consensus 10 ~~k~~lVTGas~gIG~aia~~la~~G~-------~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (286)
T 3uve_A 10 EGKVAFVTGAARGQGRSHAVRLAQEGA-------DIIAVDICKPIRAGVVDTAIPASTPEDLAETADLVKGHNRRIVTAE 82 (286)
T ss_dssp TTCEEEEESTTSHHHHHHHHHHHHTTC-------EEEEEECCSCSBTTBCCCSSCCCCHHHHHHHHHHHHTTTCCEEEEE
T ss_pred CCCEEEEeCCCchHHHHHHHHHHHCCC-------eEEEEeccccccccccccccccCCHHHHHHHHHHHhhcCCceEEEE
Confidence 357899999999999999999999886 8999987521 1222222222221110 112
Q ss_pred cceEEeCCHHHHh-------CCCcEEEEecCCCCCCC----CChh---HHHhhhHHHHHHHHHHHH----hhcCCCcEEE
Q 019990 67 KGVVATTDVVEAC-------KDVNIAVMVGGFPRKEG----MERK---DVMSKNVSIYKAQASALE----KHAAPNCKVL 128 (332)
Q Consensus 67 ~~v~~~~~~~~a~-------~~aDiVi~~ag~~~~~~----~~~~---~~~~~N~~~~~~i~~~i~----~~~~~~~~vi 128 (332)
.|++...++.+++ ...|++|+.||...... .+.+ ..++.|+.....+.+++. +.. ..+++|
T Consensus 83 ~Dv~~~~~v~~~~~~~~~~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~-~~g~iv 161 (286)
T 3uve_A 83 VDVRDYDALKAAVDSGVEQLGRLDIIVANAGIGNGGDTLDKTSEEDWTEMIDINLAGVWKTVKAGVPHMIAGG-RGGSII 161 (286)
T ss_dssp CCTTCHHHHHHHHHHHHHHHSCCCEEEECCCCCCCCSCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHT-SCEEEE
T ss_pred cCCCCHHHHHHHHHHHHHHhCCCCEEEECCcccCCCCccccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhCC-CCcEEE
Confidence 3444333333333 37899999999743221 1222 356778766655555543 332 246777
Q ss_pred EEeCChhhHHHHHHHHCCCCCCCcEEEeecccHHHHHHHHHHHcCCCCCCeee
Q 019990 129 VVANPANTNALILKEFAPSIPAKNITCLTRLDHNRAMGQISERLKVHVSDVKN 181 (332)
Q Consensus 129 v~snp~~~~~~~~~~~~~~~~~~~i~~~t~l~~~r~~~~~a~~~~v~~~~v~~ 181 (332)
++|+.... .+.+....|+.+|.....+.+.++..++ +..|+.
T Consensus 162 ~isS~~~~---------~~~~~~~~Y~asKaa~~~~~~~la~e~~--~~gI~v 203 (286)
T 3uve_A 162 LTSSVGGL---------KAYPHTGHYVAAKHGVVGLMRAFGVELG--QHMIRV 203 (286)
T ss_dssp EECCGGGT---------SCCTTCHHHHHHHHHHHHHHHHHHHHHG--GGTEEE
T ss_pred EECchhhc---------cCCCCccHHHHHHHHHHHHHHHHHHHhc--ccCeEE
Confidence 77764321 2234344677788877888888888864 345664
|
| >3vtz_A Glucose 1-dehydrogenase; rossmann fold, oxidoreductase, NAD binding; 2.30A {Thermoplasma volcanium} | Back alignment and structure |
|---|
Probab=98.48 E-value=1.6e-07 Score=83.64 Aligned_cols=148 Identities=14% Similarity=0.088 Sum_probs=91.2
Q ss_pred CCcEEEEEcCCChhHHHHHHHHHhcccCCCCCCeEEEEEecccchhhhhhhHhhhhhhccCCccceEEeCCHHHH-----
Q 019990 4 NPLRVLVTGAAGQIGYALVPMIARGIMLGPDQPVILHMLDIEPAAEALNGVKMELIDAAFPLLKGVVATTDVVEA----- 78 (332)
Q Consensus 4 ~~~kI~VtGaaG~IGs~l~~~L~~~~~~~~~~~~~i~l~D~~~~~~~~~~~~~dl~~~~~~~~~~v~~~~~~~~a----- 78 (332)
+.++|+||||+|+||++++..|++.|. +|+++|++.. ...+. . ..+..|++...++.++
T Consensus 13 ~~k~vlVTGas~GIG~aia~~l~~~G~-------~V~~~~r~~~--~~~~~------~-~~~~~Dv~~~~~v~~~~~~~~ 76 (269)
T 3vtz_A 13 TDKVAIVTGGSSGIGLAVVDALVRYGA-------KVVSVSLDEK--SDVNV------S-DHFKIDVTNEEEVKEAVEKTT 76 (269)
T ss_dssp TTCEEEESSTTSHHHHHHHHHHHHTTC-------EEEEEESCC----CTTS------S-EEEECCTTCHHHHHHHHHHHH
T ss_pred CCCEEEEeCCCCHHHHHHHHHHHHCCC-------EEEEEeCCch--hccCc------e-eEEEecCCCHHHHHHHHHHHH
Confidence 357899999999999999999999885 8999998642 11110 0 0011233322233332
Q ss_pred --hCCCcEEEEecCCCCCC---CCChh---HHHhhhHHHHHHHHHHH----HhhcCCCcEEEEEeCChhhHHHHHHHHCC
Q 019990 79 --CKDVNIAVMVGGFPRKE---GMERK---DVMSKNVSIYKAQASAL----EKHAAPNCKVLVVANPANTNALILKEFAP 146 (332)
Q Consensus 79 --~~~aDiVi~~ag~~~~~---~~~~~---~~~~~N~~~~~~i~~~i----~~~~~~~~~viv~snp~~~~~~~~~~~~~ 146 (332)
+...|++|+.||..... ..+.+ ..++.|+.....+.+++ .+.. .+++|++|+.... .
T Consensus 77 ~~~g~iD~lv~nAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~~--~g~iv~isS~~~~---------~ 145 (269)
T 3vtz_A 77 KKYGRIDILVNNAGIEQYSPLHLTPTEIWRRIIDVNVNGSYLMAKYTIPVMLAIG--HGSIINIASVQSY---------A 145 (269)
T ss_dssp HHHSCCCEEEECCCCCCCCCGGGSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHT--CEEEEEECCGGGT---------S
T ss_pred HHcCCCCEEEECCCcCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHcC--CCEEEEECchhhc---------c
Confidence 33789999999974321 12222 34567876665555544 3332 4577777764321 1
Q ss_pred CCCCCcEEEeecccHHHHHHHHHHHcCCCCCCeee
Q 019990 147 SIPAKNITCLTRLDHNRAMGQISERLKVHVSDVKN 181 (332)
Q Consensus 147 ~~~~~~i~~~t~l~~~r~~~~~a~~~~v~~~~v~~ 181 (332)
+.+....|+.+|.....+.+.++..++ + .|+.
T Consensus 146 ~~~~~~~Y~asKaa~~~l~~~la~e~~--~-~i~v 177 (269)
T 3vtz_A 146 ATKNAAAYVTSKHALLGLTRSVAIDYA--P-KIRC 177 (269)
T ss_dssp BCTTCHHHHHHHHHHHHHHHHHHHHHT--T-TEEE
T ss_pred CCCCChhHHHHHHHHHHHHHHHHHHhc--C-CCEE
Confidence 233334678888888888888998885 2 4764
|
| >3c1o_A Eugenol synthase; phenylpropene, PIP reductase, short-chain dehydrogenase/reductase, oxidoreductase; HET: NAP; 1.80A {Clarkia breweri} | Back alignment and structure |
|---|
Probab=98.48 E-value=1.4e-07 Score=85.65 Aligned_cols=97 Identities=14% Similarity=0.159 Sum_probs=62.7
Q ss_pred CCcEEEEEcCCChhHHHHHHHHHhcccCCCCCCeEEEEEeccc-c---hhhhhhhHhhhhhhcc-CCccceEEeCCHHHH
Q 019990 4 NPLRVLVTGAAGQIGYALVPMIARGIMLGPDQPVILHMLDIEP-A---AEALNGVKMELIDAAF-PLLKGVVATTDVVEA 78 (332)
Q Consensus 4 ~~~kI~VtGaaG~IGs~l~~~L~~~~~~~~~~~~~i~l~D~~~-~---~~~~~~~~~dl~~~~~-~~~~~v~~~~~~~~a 78 (332)
+|++|+||||+|++|++++..|++.+. +|++++++. . .++.. ...++..... ....|+....++.++
T Consensus 3 ~~~~ilVtGatG~iG~~l~~~L~~~g~-------~V~~~~R~~~~~~~~~~~~-~l~~~~~~~v~~v~~D~~d~~~l~~a 74 (321)
T 3c1o_A 3 HMEKIIIYGGTGYIGKFMVRASLSFSH-------PTFIYARPLTPDSTPSSVQ-LREEFRSMGVTIIEGEMEEHEKMVSV 74 (321)
T ss_dssp -CCCEEEETTTSTTHHHHHHHHHHTTC-------CEEEEECCCCTTCCHHHHH-HHHHHHHTTCEEEECCTTCHHHHHHH
T ss_pred cccEEEEEcCCchhHHHHHHHHHhCCC-------cEEEEECCcccccChHHHH-HHHHhhcCCcEEEEecCCCHHHHHHH
Confidence 467899999999999999999998875 788888763 1 01111 1111211111 112355444567788
Q ss_pred hCCCcEEEEecCCCCCCCCChhHHHhhhHHHHHHHHHHHHhhc
Q 019990 79 CKDVNIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEKHA 121 (332)
Q Consensus 79 ~~~aDiVi~~ag~~~~~~~~~~~~~~~N~~~~~~i~~~i~~~~ 121 (332)
++++|+|||+++... ....+++++++++.+
T Consensus 75 ~~~~d~vi~~a~~~~-------------~~~~~~l~~aa~~~g 104 (321)
T 3c1o_A 75 LKQVDIVISALPFPM-------------ISSQIHIINAIKAAG 104 (321)
T ss_dssp HTTCSEEEECCCGGG-------------SGGGHHHHHHHHHHC
T ss_pred HcCCCEEEECCCccc-------------hhhHHHHHHHHHHhC
Confidence 999999999987532 222467788888764
|
| >4fc7_A Peroxisomal 2,4-dienoyl-COA reductase; SDR/rossmann fold, peroxisomal beta-oxidation, oxidoreductas; HET: NAP COA; 1.84A {Homo sapiens} PDB: 4fc6_A* | Back alignment and structure |
|---|
Probab=98.47 E-value=2.2e-07 Score=83.00 Aligned_cols=158 Identities=12% Similarity=0.081 Sum_probs=95.2
Q ss_pred CCcEEEEEcCCChhHHHHHHHHHhcccCCCCCCeEEEEEecccchhhhhhhHhhhhhh---c-cCCccceEEeCCHHHHh
Q 019990 4 NPLRVLVTGAAGQIGYALVPMIARGIMLGPDQPVILHMLDIEPAAEALNGVKMELIDA---A-FPLLKGVVATTDVVEAC 79 (332)
Q Consensus 4 ~~~kI~VtGaaG~IGs~l~~~L~~~~~~~~~~~~~i~l~D~~~~~~~~~~~~~dl~~~---~-~~~~~~v~~~~~~~~a~ 79 (332)
+.++++||||+|+||.+++..|++.|. +|++.|++. +.+.....++... . .....|++...++.+++
T Consensus 26 ~~k~~lVTGas~GIG~aia~~l~~~G~-------~V~~~~r~~--~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~ 96 (277)
T 4fc7_A 26 RDKVAFITGGGSGIGFRIAEIFMRHGC-------HTVIASRSL--PRVLTAARKLAGATGRRCLPLSMDVRAPPAVMAAV 96 (277)
T ss_dssp TTCEEEEETTTSHHHHHHHHHHHTTTC-------EEEEEESCH--HHHHHHHHHHHHHHSSCEEEEECCTTCHHHHHHHH
T ss_pred CCCEEEEeCCCchHHHHHHHHHHHCCC-------EEEEEeCCH--HHHHHHHHHHHHhcCCcEEEEEcCCCCHHHHHHHH
Confidence 346899999999999999999999885 899999864 2333333333211 0 01123444333333333
Q ss_pred -------CCCcEEEEecCCCCCC---CCCh---hHHHhhhHHHHHHHHHHHHhhc--CCCcEEEEEeCChhhHHHHHHHH
Q 019990 80 -------KDVNIAVMVGGFPRKE---GMER---KDVMSKNVSIYKAQASALEKHA--APNCKVLVVANPANTNALILKEF 144 (332)
Q Consensus 80 -------~~aDiVi~~ag~~~~~---~~~~---~~~~~~N~~~~~~i~~~i~~~~--~~~~~viv~snp~~~~~~~~~~~ 144 (332)
...|++|+.||..... ..+. ...++.|+.....+.+++...- ...+++|++|+....
T Consensus 97 ~~~~~~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~g~iv~isS~~~~-------- 168 (277)
T 4fc7_A 97 DQALKEFGRIDILINCAAGNFLCPAGALSFNAFKTVMDIDTSGTFNVSRVLYEKFFRDHGGVIVNITATLGN-------- 168 (277)
T ss_dssp HHHHHHHSCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHTHHHHCEEEEEECCSHHH--------
T ss_pred HHHHHHcCCCCEEEECCcCCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCCCEEEEECchhhC--------
Confidence 3789999999864321 1222 2356778777766666653221 024577777764321
Q ss_pred CCCCCCCcEEEeecccHHHHHHHHHHHcCCCCCCeee
Q 019990 145 APSIPAKNITCLTRLDHNRAMGQISERLKVHVSDVKN 181 (332)
Q Consensus 145 ~~~~~~~~i~~~t~l~~~r~~~~~a~~~~v~~~~v~~ 181 (332)
.+.+....|+.+|.....+.+.++..++ +..|+.
T Consensus 169 -~~~~~~~~Y~asKaa~~~l~~~la~e~~--~~gi~v 202 (277)
T 4fc7_A 169 -RGQALQVHAGSAKAAVDAMTRHLAVEWG--PQNIRV 202 (277)
T ss_dssp -HTCTTCHHHHHHHHHHHHHHHHHHHHHG--GGTEEE
T ss_pred -CCCCCcHHHHHHHHHHHHHHHHHHHHhh--hcCeEE
Confidence 1233334567788877888888888764 345663
|
| >4e4y_A Short chain dehydrogenase family protein; structural genomics, the center for structural genomics of I diseases, csgid, niaid; 1.80A {Francisella tularensis subsp} | Back alignment and structure |
|---|
Probab=98.46 E-value=4.8e-08 Score=85.56 Aligned_cols=152 Identities=15% Similarity=0.133 Sum_probs=93.6
Q ss_pred CCCcEEEEEcCCChhHHHHHHHHHh-cccCCCCCCeEEEEEecccchhhhhhhHhhhhhhccCCccceEEeCCHHHHhC-
Q 019990 3 KNPLRVLVTGAAGQIGYALVPMIAR-GIMLGPDQPVILHMLDIEPAAEALNGVKMELIDAAFPLLKGVVATTDVVEACK- 80 (332)
Q Consensus 3 ~~~~kI~VtGaaG~IGs~l~~~L~~-~~~~~~~~~~~i~l~D~~~~~~~~~~~~~dl~~~~~~~~~~v~~~~~~~~a~~- 80 (332)
.++++++||||+|+||.+++..|++ .+. .|.+.|++... .... + .....|++...++.+.++
T Consensus 2 ~~~k~vlITGas~gIG~~~a~~l~~~~g~-------~v~~~~~~~~~-~~~~----~----~~~~~Dv~~~~~v~~~~~~ 65 (244)
T 4e4y_A 2 NAMANYLVTGGSKGIGKAVVELLLQNKNH-------TVINIDIQQSF-SAEN----L----KFIKADLTKQQDITNVLDI 65 (244)
T ss_dssp -CCEEEEEETTTSHHHHHHHHHHTTSTTE-------EEEEEESSCCC-CCTT----E----EEEECCTTCHHHHHHHHHH
T ss_pred CCCCeEEEeCCCChHHHHHHHHHHhcCCc-------EEEEecccccc-cccc----c----eEEecCcCCHHHHHHHHHH
Confidence 3567899999999999999999988 554 78888875421 1110 0 001123333333333332
Q ss_pred ----CCcEEEEecCCCCC---CCCCh---hHHHhhhHHHHHHHHHHHHhhcCCCcEEEEEeCChhhHHHHHHHHCCCCCC
Q 019990 81 ----DVNIAVMVGGFPRK---EGMER---KDVMSKNVSIYKAQASALEKHAAPNCKVLVVANPANTNALILKEFAPSIPA 150 (332)
Q Consensus 81 ----~aDiVi~~ag~~~~---~~~~~---~~~~~~N~~~~~~i~~~i~~~~~~~~~viv~snp~~~~~~~~~~~~~~~~~ 150 (332)
..|++|+.||.... ...+. ...++.|+.....+.+++..+-.+.+++|++|+.... .+.+.
T Consensus 66 ~~~~~id~lv~nAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~~~~~~~~g~iv~~sS~~~~---------~~~~~ 136 (244)
T 4e4y_A 66 IKNVSFDGIFLNAGILIKGSIFDIDIESIKKVLDLNVWSSIYFIKGLENNLKVGASIVFNGSDQCF---------IAKPN 136 (244)
T ss_dssp TTTCCEEEEEECCCCCCCBCTTTSCHHHHHHHHHHHTHHHHHHHHHTGGGEEEEEEEEEECCGGGT---------CCCTT
T ss_pred HHhCCCCEEEECCccCCCCCcccCCHHHHHHHHHHccHHHHHHHHHHHHHhccCcEEEEECCHHHc---------cCCCC
Confidence 67999999997432 12222 2356788888888888877653223466777653321 22343
Q ss_pred CcEEEeecccHHHHHHHHHHHcCCCCCCeee
Q 019990 151 KNITCLTRLDHNRAMGQISERLKVHVSDVKN 181 (332)
Q Consensus 151 ~~i~~~t~l~~~r~~~~~a~~~~v~~~~v~~ 181 (332)
...|+.+|.....+.+.+++.++ +..|+.
T Consensus 137 ~~~Y~asKaa~~~~~~~la~e~~--~~gi~v 165 (244)
T 4e4y_A 137 SFAYTLSKGAIAQMTKSLALDLA--KYQIRV 165 (244)
T ss_dssp BHHHHHHHHHHHHHHHHHHHHHG--GGTCEE
T ss_pred CchhHHHHHHHHHHHHHHHHHHH--HcCeEE
Confidence 44678888888888888888764 334553
|
| >1uzm_A 3-oxoacyl-[acyl-carrier protein] reductase; beta-ketoacyl reductase, oxidoreductase; 1.49A {Mycobacterium tuberculosis} SCOP: c.2.1.2 PDB: 1uzn_A* 2ntn_A 1uzl_A | Back alignment and structure |
|---|
Probab=98.45 E-value=2.7e-07 Score=80.97 Aligned_cols=150 Identities=17% Similarity=0.155 Sum_probs=88.0
Q ss_pred CCcEEEEEcCCChhHHHHHHHHHhcccCCCCCCeEEEEEecccchhhhhhhHhhhhhhccCCccceEEeCCHHHH-----
Q 019990 4 NPLRVLVTGAAGQIGYALVPMIARGIMLGPDQPVILHMLDIEPAAEALNGVKMELIDAAFPLLKGVVATTDVVEA----- 78 (332)
Q Consensus 4 ~~~kI~VtGaaG~IGs~l~~~L~~~~~~~~~~~~~i~l~D~~~~~~~~~~~~~dl~~~~~~~~~~v~~~~~~~~a----- 78 (332)
+.++|+||||+|+||++++..|++.|. +|++.+++.. .+... .. ...|++...++.++
T Consensus 14 ~~k~vlVTGas~gIG~~ia~~l~~~G~-------~V~~~~r~~~--~~~~~----~~----~~~D~~~~~~~~~~~~~~~ 76 (247)
T 1uzm_A 14 VSRSVLVTGGNRGIGLAIAQRLAADGH-------KVAVTHRGSG--APKGL----FG----VEVDVTDSDAVDRAFTAVE 76 (247)
T ss_dssp CCCEEEETTTTSHHHHHHHHHHHHTTC-------EEEEEESSSC--CCTTS----EE----EECCTTCHHHHHHHHHHHH
T ss_pred CCCEEEEeCCCCHHHHHHHHHHHHCCC-------EEEEEeCChH--HHHHh----cC----eeccCCCHHHHHHHHHHHH
Confidence 356899999999999999999999885 8999987542 12110 00 11122222222222
Q ss_pred --hCCCcEEEEecCCCCCC---CCCh---hHHHhhhHHHHHHHHHHHHhhc--CCCcEEEEEeCChhhHHHHHHHHCCCC
Q 019990 79 --CKDVNIAVMVGGFPRKE---GMER---KDVMSKNVSIYKAQASALEKHA--APNCKVLVVANPANTNALILKEFAPSI 148 (332)
Q Consensus 79 --~~~aDiVi~~ag~~~~~---~~~~---~~~~~~N~~~~~~i~~~i~~~~--~~~~~viv~snp~~~~~~~~~~~~~~~ 148 (332)
+...|++|+.||..... ..+. ...++.|+.....+.+++..+- ....++|++|+..... +.
T Consensus 77 ~~~g~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~g~iv~isS~~~~~---------~~ 147 (247)
T 1uzm_A 77 EHQGPVEVLVSNAGLSADAFLMRMTEEKFEKVINANLTGAFRVAQRASRSMQRNKFGRMIFIGSVSGLW---------GI 147 (247)
T ss_dssp HHHSSCSEEEEECSCCC-----CCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHTTCEEEEEECCCCC-------------
T ss_pred HHcCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhCCCCEEEEECCHhhcc---------CC
Confidence 34689999999975321 1222 2356778777666666554321 1235777777643211 12
Q ss_pred CCCcEEEeecccHHHHHHHHHHHcCCCCCCeee
Q 019990 149 PAKNITCLTRLDHNRAMGQISERLKVHVSDVKN 181 (332)
Q Consensus 149 ~~~~i~~~t~l~~~r~~~~~a~~~~v~~~~v~~ 181 (332)
+....|+.+|.....+.+.+++.++ +..|+.
T Consensus 148 ~~~~~Y~~sK~a~~~~~~~la~e~~--~~gi~v 178 (247)
T 1uzm_A 148 GNQANYAASKAGVIGMARSIARELS--KANVTA 178 (247)
T ss_dssp -CCHHHHHHHHHHHHHHHHHHHHHG--GGTEEE
T ss_pred CCChhHHHHHHHHHHHHHHHHHHhh--hcCcEE
Confidence 3333567777777778777887764 345664
|
| >3rku_A Oxidoreductase YMR226C; substrate fingerprint, short chain oxidoreductase, rossmann oxidoreductase; HET: NAP; 2.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.45 E-value=8.5e-07 Score=79.69 Aligned_cols=158 Identities=16% Similarity=0.198 Sum_probs=97.5
Q ss_pred CcEEEEEcCCChhHHHHHHHHHhcccCCCCCCeEEEEEecccchhhhhhhHhhhhhh----cc-CCccceEEeCCHHHHh
Q 019990 5 PLRVLVTGAAGQIGYALVPMIARGIMLGPDQPVILHMLDIEPAAEALNGVKMELIDA----AF-PLLKGVVATTDVVEAC 79 (332)
Q Consensus 5 ~~kI~VtGaaG~IGs~l~~~L~~~~~~~~~~~~~i~l~D~~~~~~~~~~~~~dl~~~----~~-~~~~~v~~~~~~~~a~ 79 (332)
.++++||||+|+||.+++..|++.|.-. ..|++.+++. +.+.....++... .. ....|++...++.+++
T Consensus 33 ~k~~lVTGas~GIG~aia~~l~~~G~~~----~~V~~~~r~~--~~~~~~~~~l~~~~~~~~~~~~~~Dv~d~~~v~~~~ 106 (287)
T 3rku_A 33 KKTVLITGASAGIGKATALEYLEASNGD----MKLILAARRL--EKLEELKKTIDQEFPNAKVHVAQLDITQAEKIKPFI 106 (287)
T ss_dssp TCEEEEESTTSHHHHHHHHHHHHHHTTC----SEEEEEESCH--HHHHHHHHHHHHHCTTCEEEEEECCTTCGGGHHHHH
T ss_pred CCEEEEecCCChHHHHHHHHHHHcCCCC----ceEEEEECCH--HHHHHHHHHHHhhCCCCeEEEEECCCCCHHHHHHHH
Confidence 4689999999999999999998876311 2788888764 3344333333221 11 1123555545554444
Q ss_pred C-------CCcEEEEecCCCCC--C--CCCh---hHHHhhhHHHHHHHHHHH----HhhcCCCcEEEEEeCChhhHHHHH
Q 019990 80 K-------DVNIAVMVGGFPRK--E--GMER---KDVMSKNVSIYKAQASAL----EKHAAPNCKVLVVANPANTNALIL 141 (332)
Q Consensus 80 ~-------~aDiVi~~ag~~~~--~--~~~~---~~~~~~N~~~~~~i~~~i----~~~~~~~~~viv~snp~~~~~~~~ 141 (332)
+ ..|++|+.||.... + ..+. ...++.|+.....+.+++ ++.. .+++|++|+....
T Consensus 107 ~~~~~~~g~iD~lVnnAG~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~m~~~~--~g~IV~isS~~~~----- 179 (287)
T 3rku_A 107 ENLPQEFKDIDILVNNAGKALGSDRVGQIATEDIQDVFDTNVTALINITQAVLPIFQAKN--SGDIVNLGSIAGR----- 179 (287)
T ss_dssp HTSCGGGCSCCEEEECCCCCCCCCCTTSCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHT--CCEEEEECCGGGT-----
T ss_pred HHHHHhcCCCCEEEECCCcCCCCCCcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC--CCeEEEECChhhc-----
Confidence 3 58999999997431 1 1222 235677877766666555 4432 4577777764321
Q ss_pred HHHCCCCCCCcEEEeecccHHHHHHHHHHHcCCCCCCeee
Q 019990 142 KEFAPSIPAKNITCLTRLDHNRAMGQISERLKVHVSDVKN 181 (332)
Q Consensus 142 ~~~~~~~~~~~i~~~t~l~~~r~~~~~a~~~~v~~~~v~~ 181 (332)
.+.+....|+.+|.....+.+.++..+. +..|+.
T Consensus 180 ----~~~~~~~~Y~asKaa~~~l~~~la~e~~--~~gIrv 213 (287)
T 3rku_A 180 ----DAYPTGSIYCASKFAVGAFTDSLRKELI--NTKIRV 213 (287)
T ss_dssp ----SCCTTCHHHHHHHHHHHHHHHHHHHHTT--TSSCEE
T ss_pred ----CCCCCCchHHHHHHHHHHHHHHHHHHhh--hcCCEE
Confidence 2334444678888888888888888875 445664
|
| >2h7i_A Enoyl-[acyl-carrier-protein] reductase [NADH]; oxidoreductase, INHA, enoyl acyl carrier reductase, pyrrolid carboxamide; HET: NAD 566; 1.62A {Mycobacterium tuberculosis} SCOP: c.2.1.2 PDB: 1p44_A* 1p45_A* 2b35_A* 2b36_A* 2b37_A* 2aq8_A* 2h7l_A* 2h7m_A* 2h7n_A* 2h7p_A* 2nsd_A* 2pr2_A* 2x22_A* 2x23_A* 3fne_A* 3fnf_A* 3fng_A* 3fnh_A* 3oew_A* 2aqh_A* ... | Back alignment and structure |
|---|
Probab=98.44 E-value=1.7e-07 Score=83.35 Aligned_cols=158 Identities=14% Similarity=0.126 Sum_probs=93.4
Q ss_pred CCcEEEEEcC--CChhHHHHHHHHHhcccCCCCCCeEEEEEecccchhhhhhhHhhhhhhccCCccceEEeCCHHHHhC-
Q 019990 4 NPLRVLVTGA--AGQIGYALVPMIARGIMLGPDQPVILHMLDIEPAAEALNGVKMELIDAAFPLLKGVVATTDVVEACK- 80 (332)
Q Consensus 4 ~~~kI~VtGa--aG~IGs~l~~~L~~~~~~~~~~~~~i~l~D~~~~~~~~~~~~~dl~~~~~~~~~~v~~~~~~~~a~~- 80 (332)
+.++++|||| +|+||.+++..|++.|. +|++.|++... .+.....++.........|++...++.+.++
T Consensus 6 ~~k~vlVTGa~~s~gIG~aia~~l~~~G~-------~V~~~~r~~~~-~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~ 77 (269)
T 2h7i_A 6 DGKRILVSGIITDSSIAFHIARVAQEQGA-------QLVLTGFDRLR-LIQRITDRLPAKAPLLELDVQNEEHLASLAGR 77 (269)
T ss_dssp TTCEEEECCCSSTTSHHHHHHHHHHHTTC-------EEEEEECSCHH-HHHHHHTTSSSCCCEEECCTTCHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCchHHHHHHHHHHCCC-------EEEEEecChHH-HHHHHHHhcCCCceEEEccCCCHHHHHHHHHH
Confidence 3568999998 89999999999999885 89999986421 1121111111100011234443333333333
Q ss_pred ---------CCcEEEEecCCCCC------C--CCChh---HHHhhhHHHHHHHHHHHHhhcCCCcEEEEEeCChhhHHHH
Q 019990 81 ---------DVNIAVMVGGFPRK------E--GMERK---DVMSKNVSIYKAQASALEKHAAPNCKVLVVANPANTNALI 140 (332)
Q Consensus 81 ---------~aDiVi~~ag~~~~------~--~~~~~---~~~~~N~~~~~~i~~~i~~~~~~~~~viv~snp~~~~~~~ 140 (332)
..|++|+.||.... + ..+.+ ..+..|+.....+.+.+..+-.+.+++|++|+...
T Consensus 78 ~~~~~g~~~~iD~lv~nAg~~~~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~g~iv~iss~~~----- 152 (269)
T 2h7i_A 78 VTEAIGAGNKLDGVVHSIGFMPQTGMGINPFFDAPYADVSKGIHISAYSYASMAKALLPIMNPGGSIVGMDFDPS----- 152 (269)
T ss_dssp HHHHHCTTCCEEEEEECCCCCCGGGSTTSCGGGCCHHHHHHHHHHHTHHHHHHHHHHGGGEEEEEEEEEEECCCS-----
T ss_pred HHHHhCCCCCceEEEECCccCccccccccccccCCHHHHHHHHHHhhHHHHHHHHHHHHhhccCCeEEEEcCccc-----
Confidence 78999999997531 1 12222 34677888888888887765322356777764211
Q ss_pred HHHHCCCCCCCcEEEeecccHHHHHHHHHHHcCCCCCCeee
Q 019990 141 LKEFAPSIPAKNITCLTRLDHNRAMGQISERLKVHVSDVKN 181 (332)
Q Consensus 141 ~~~~~~~~~~~~i~~~t~l~~~r~~~~~a~~~~v~~~~v~~ 181 (332)
.+.+....|+.+|.....+.+.++..+. +..|+.
T Consensus 153 -----~~~~~~~~Y~asKaa~~~l~~~la~e~~--~~gi~v 186 (269)
T 2h7i_A 153 -----RAMPAYNWMTVAKSALESVNRFVAREAG--KYGVRS 186 (269)
T ss_dssp -----SCCTTTHHHHHHHHHHHHHHHHHHHHHH--TTTCEE
T ss_pred -----cccCchHHHHHHHHHHHHHHHHHHHHhc--ccCcEE
Confidence 1123333456777777777777887764 344553
|
| >3kzv_A Uncharacterized oxidoreductase YIR035C; cytoplasmic protein, unknown function, structural genomics, MCSG, protein structure initiative; 2.00A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.44 E-value=6.4e-07 Score=78.88 Aligned_cols=158 Identities=15% Similarity=0.119 Sum_probs=92.8
Q ss_pred cEEEEEcCCChhHHHHHHHHHhcccCCCCCCeEEEEEecccchhhhhhhHhhhhhhccCCccceEEeCCHHHHh------
Q 019990 6 LRVLVTGAAGQIGYALVPMIARGIMLGPDQPVILHMLDIEPAAEALNGVKMELIDAAFPLLKGVVATTDVVEAC------ 79 (332)
Q Consensus 6 ~kI~VtGaaG~IGs~l~~~L~~~~~~~~~~~~~i~l~D~~~~~~~~~~~~~dl~~~~~~~~~~v~~~~~~~~a~------ 79 (332)
++++||||+|+||.+++..|++.+. + ..|++.+++. +.+.....++.........|++...++.+.+
T Consensus 3 k~~lVTGas~GIG~aia~~l~~~g~-~----~~v~~~~r~~--~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~ 75 (254)
T 3kzv_A 3 KVILVTGVSRGIGKSIVDVLFSLDK-D----TVVYGVARSE--APLKKLKEKYGDRFFYVVGDITEDSVLKQLVNAAVKG 75 (254)
T ss_dssp CEEEECSTTSHHHHHHHHHHHHHCS-S----CEEEEEESCH--HHHHHHHHHHGGGEEEEESCTTSHHHHHHHHHHHHHH
T ss_pred CEEEEECCCchHHHHHHHHHHhcCC-C----eEEEEecCCH--HHHHHHHHHhCCceEEEECCCCCHHHHHHHHHHHHHh
Confidence 5799999999999999999988652 1 2788888753 2333222222111111123444333333333
Q ss_pred -CCCcEEEEecCCCCC--C--CCChh---HHHhhhHHHHHHHHHHH----HhhcCCCcEEEEEeCChhhHHHHHHHHCCC
Q 019990 80 -KDVNIAVMVGGFPRK--E--GMERK---DVMSKNVSIYKAQASAL----EKHAAPNCKVLVVANPANTNALILKEFAPS 147 (332)
Q Consensus 80 -~~aDiVi~~ag~~~~--~--~~~~~---~~~~~N~~~~~~i~~~i----~~~~~~~~~viv~snp~~~~~~~~~~~~~~ 147 (332)
...|++|+.||.... + ..+.+ ..++.|+.....+.+.+ ++. .+++|++|+.... .+
T Consensus 76 ~g~id~lvnnAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~m~~~---~g~iv~isS~~~~---------~~ 143 (254)
T 3kzv_A 76 HGKIDSLVANAGVLEPVQNVNEIDVNAWKKLYDINFFSIVSLVGIALPELKKT---NGNVVFVSSDACN---------MY 143 (254)
T ss_dssp HSCCCEEEEECCCCCCCTTTTSCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHH---TCEEEEECCSCCC---------CS
T ss_pred cCCccEEEECCcccCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhc---CCeEEEEcCchhc---------cC
Confidence 378999999997321 1 12222 35667877666665555 443 2577777764321 12
Q ss_pred CCCCcEEEeecccHHHHHHHHHHHcCCCCCCeeeeEEEec
Q 019990 148 IPAKNITCLTRLDHNRAMGQISERLKVHVSDVKNVIIWGN 187 (332)
Q Consensus 148 ~~~~~i~~~t~l~~~r~~~~~a~~~~v~~~~v~~~~V~G~ 187 (332)
.+....|+.+|.....+.+.+++.+ ..||. +.+-+
T Consensus 144 ~~~~~~Y~asK~a~~~~~~~la~e~----~~i~v-n~v~P 178 (254)
T 3kzv_A 144 FSSWGAYGSSKAALNHFAMTLANEE----RQVKA-IAVAP 178 (254)
T ss_dssp SCCSHHHHHHHHHHHHHHHHHHHHC----TTSEE-EEEEC
T ss_pred CCCcchHHHHHHHHHHHHHHHHhhc----cCcEE-EEEeC
Confidence 3444467888888888888888886 34664 33343
|
| >1zmo_A Halohydrin dehalogenase; haloalcohol dehalogenase, short- chain dehydrogenase/reductase family, lyase; 2.00A {Arthrobacter SP} | Back alignment and structure |
|---|
Probab=98.43 E-value=6.6e-07 Score=78.25 Aligned_cols=150 Identities=11% Similarity=0.041 Sum_probs=89.5
Q ss_pred cEEEEEcCCChhHHHHHHHHHhcccCCCCCCeEEEEE-e--cccchhhhhhhHhhhhhhccCCccceEEeCCHHHH----
Q 019990 6 LRVLVTGAAGQIGYALVPMIARGIMLGPDQPVILHML-D--IEPAAEALNGVKMELIDAAFPLLKGVVATTDVVEA---- 78 (332)
Q Consensus 6 ~kI~VtGaaG~IGs~l~~~L~~~~~~~~~~~~~i~l~-D--~~~~~~~~~~~~~dl~~~~~~~~~~v~~~~~~~~a---- 78 (332)
++++||||+|+||.+++..|++.|. +|++. + ++. +.+.....++ . ..++....++.++
T Consensus 2 k~vlVTGas~gIG~~ia~~l~~~G~-------~V~~~~~~~r~~--~~~~~~~~~~-~-----~~~~~~~~~v~~~~~~~ 66 (244)
T 1zmo_A 2 VIALVTHARHFAGPAAVEALTQDGY-------TVVCHDASFADA--AERQRFESEN-P-----GTIALAEQKPERLVDAT 66 (244)
T ss_dssp CEEEESSTTSTTHHHHHHHHHHTTC-------EEEECCGGGGSH--HHHHHHHHHS-T-----TEEECCCCCGGGHHHHH
T ss_pred CEEEEECCCChHHHHHHHHHHHCCC-------EEEEecCCcCCH--HHHHHHHHHh-C-----CCcccCHHHHHHHHHHH
Confidence 5799999999999999999999885 88888 5 643 2333222222 0 0111122222222
Q ss_pred ---hCCCcEEEEecCCCCC----C--CCCh---hHHHhhhHHHHHHHHHHHHhhc--CCCcEEEEEeCChhhHHHHHHHH
Q 019990 79 ---CKDVNIAVMVGGFPRK----E--GMER---KDVMSKNVSIYKAQASALEKHA--APNCKVLVVANPANTNALILKEF 144 (332)
Q Consensus 79 ---~~~aDiVi~~ag~~~~----~--~~~~---~~~~~~N~~~~~~i~~~i~~~~--~~~~~viv~snp~~~~~~~~~~~ 144 (332)
+...|++|+.||.... + ..+. ...++.|+.....+.+++..+- ....++|++|+....
T Consensus 67 ~~~~g~iD~lv~~Ag~~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~m~~~~~g~iv~isS~~~~-------- 138 (244)
T 1zmo_A 67 LQHGEAIDTIVSNDYIPRPMNRLPLEGTSEADIRQMFEALSIFPILLLQSAIAPLRAAGGASVIFITSSVGK-------- 138 (244)
T ss_dssp GGGSSCEEEEEECCCCCTTGGGCCSTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHTTCEEEEEECCGGGT--------
T ss_pred HHHcCCCCEEEECCCcCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCcEEEEECChhhC--------
Confidence 2368999999997432 1 1222 2356778766666555543221 124677777764321
Q ss_pred CCCCCCCcEEEeecccHHHHHHHHHHHcCCCCCCeee
Q 019990 145 APSIPAKNITCLTRLDHNRAMGQISERLKVHVSDVKN 181 (332)
Q Consensus 145 ~~~~~~~~i~~~t~l~~~r~~~~~a~~~~v~~~~v~~ 181 (332)
.+.+....|+.+|.....+.+.++..++ +..|+.
T Consensus 139 -~~~~~~~~Y~asK~a~~~~~~~la~e~~--~~gi~v 172 (244)
T 1zmo_A 139 -KPLAYNPLYGPARAATVALVESAAKTLS--RDGILL 172 (244)
T ss_dssp -SCCTTCTTHHHHHHHHHHHHHHHHHHHG--GGTEEE
T ss_pred -CCCCCchHHHHHHHHHHHHHHHHHHHHh--hcCcEE
Confidence 1234444678888888888888887764 345664
|
| >3icc_A Putative 3-oxoacyl-(acyl carrier protein) reducta; structural genomics, putative 3-oxoacyl-(acyl carrier protei reductase, oxidoreductase; HET: NAP MES; 1.87A {Bacillus anthracis str} | Back alignment and structure |
|---|
Probab=98.42 E-value=2.5e-07 Score=81.19 Aligned_cols=153 Identities=15% Similarity=0.102 Sum_probs=91.1
Q ss_pred CCcEEEEEcCCChhHHHHHHHHHhcccCCCCCCeEEEEEecccchhhhhhhHhhhhhhcc---CCccceEEeCCHHHHhC
Q 019990 4 NPLRVLVTGAAGQIGYALVPMIARGIMLGPDQPVILHMLDIEPAAEALNGVKMELIDAAF---PLLKGVVATTDVVEACK 80 (332)
Q Consensus 4 ~~~kI~VtGaaG~IGs~l~~~L~~~~~~~~~~~~~i~l~D~~~~~~~~~~~~~dl~~~~~---~~~~~v~~~~~~~~a~~ 80 (332)
+.++++||||+|+||.+++..|++.|. .+++.+.+.. +.+.....++..... ....|+....+..+.++
T Consensus 6 ~~k~vlITGas~gIG~~~a~~l~~~G~-------~v~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~ 77 (255)
T 3icc_A 6 KGKVALVTGASRGIGRAIAKRLANDGA-------LVAIHYGNRK-EEAEETVYEIQSNGGSAFSIGANLESLHGVEALYS 77 (255)
T ss_dssp TTCEEEETTCSSHHHHHHHHHHHHTTC-------EEEEEESSCS-HHHHHHHHHHHHTTCEEEEEECCTTSHHHHHHHHH
T ss_pred CCCEEEEECCCChHHHHHHHHHHHCCC-------eEEEEeCCch-HHHHHHHHHHHhcCCceEEEecCcCCHHHHHHHHH
Confidence 457899999999999999999999885 6777543322 233333333332110 01122222222222221
Q ss_pred -------------CCcEEEEecCCCCCC---CCCh---hHHHhhhHHHHHHHHHHHHhhcCCCcEEEEEeCChhhHHHHH
Q 019990 81 -------------DVNIAVMVGGFPRKE---GMER---KDVMSKNVSIYKAQASALEKHAAPNCKVLVVANPANTNALIL 141 (332)
Q Consensus 81 -------------~aDiVi~~ag~~~~~---~~~~---~~~~~~N~~~~~~i~~~i~~~~~~~~~viv~snp~~~~~~~~ 141 (332)
..|++|+.||..... ..+. ...+..|+.....+.+.+..+-.+..++|++|+....
T Consensus 78 ~~~~~~~~~~~~~~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~iv~isS~~~~----- 152 (255)
T 3icc_A 78 SLDNELQNRTGSTKFDILINNAGIGPGAFIEETTEQFFDRMVSVNAKAPFFIIQQALSRLRDNSRIINISSAATR----- 152 (255)
T ss_dssp HHHHHHHHHHSSSCEEEEEECCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHTTTEEEEEEEEEECCGGGT-----
T ss_pred HHHHHhcccccCCcccEEEECCCCCCCCChhhCCHHHHHHHHhhhchHHHHHHHHHHHhhCCCCEEEEeCChhhc-----
Confidence 289999999974321 1122 2346778888778877776653224577777764321
Q ss_pred HHHCCCCCCCcEEEeecccHHHHHHHHHHHcC
Q 019990 142 KEFAPSIPAKNITCLTRLDHNRAMGQISERLK 173 (332)
Q Consensus 142 ~~~~~~~~~~~i~~~t~l~~~r~~~~~a~~~~ 173 (332)
.+.+....|+.+|.....+...+++.+.
T Consensus 153 ----~~~~~~~~Y~asKaa~~~~~~~la~e~~ 180 (255)
T 3icc_A 153 ----ISLPDFIAYSMTKGAINTMTFTLAKQLG 180 (255)
T ss_dssp ----SCCTTBHHHHHHHHHHHHHHHHHHHHHG
T ss_pred ----cCCCCcchhHHhHHHHHHHHHHHHHHHH
Confidence 2234344678888888888888888764
|
| >1oaa_A Sepiapterin reductase; tetrahydrobiopterin, oxidoreductase; HET: NAP; 1.25A {Mus musculus} SCOP: c.2.1.2 PDB: 1nas_A* 1sep_A* 1z6z_A* | Back alignment and structure |
|---|
Probab=98.42 E-value=4.7e-07 Score=79.89 Aligned_cols=161 Identities=12% Similarity=0.092 Sum_probs=97.9
Q ss_pred CCcEEEEEcCCChhHHHHHHHHHh---cccCCCCCCeEEEEEecccchhhhhhhHhhhhhh----cc-CCccceEEeCCH
Q 019990 4 NPLRVLVTGAAGQIGYALVPMIAR---GIMLGPDQPVILHMLDIEPAAEALNGVKMELIDA----AF-PLLKGVVATTDV 75 (332)
Q Consensus 4 ~~~kI~VtGaaG~IGs~l~~~L~~---~~~~~~~~~~~i~l~D~~~~~~~~~~~~~dl~~~----~~-~~~~~v~~~~~~ 75 (332)
+.++++||||+|+||.+++..|++ .|. +|++.|++. +.+.....++... .. ....|++...++
T Consensus 5 ~~k~~lVTGas~gIG~~ia~~l~~~~~~G~-------~V~~~~r~~--~~~~~~~~~l~~~~~~~~~~~~~~Dv~~~~~v 75 (259)
T 1oaa_A 5 GCAVCVLTGASRGFGRALAPQLARLLSPGS-------VMLVSARSE--SMLRQLKEELGAQQPDLKVVLAAADLGTEAGV 75 (259)
T ss_dssp BSEEEEESSCSSHHHHHHHHHHHTTBCTTC-------EEEEEESCH--HHHHHHHHHHHHHCTTSEEEEEECCTTSHHHH
T ss_pred CCcEEEEeCCCChHHHHHHHHHHHhhcCCC-------eEEEEeCCH--HHHHHHHHHHHhhCCCCeEEEEecCCCCHHHH
Confidence 346799999999999999999998 665 899999864 2333333333221 00 111344333333
Q ss_pred HHHh----C-----CCc--EEEEecCCCCCC-----C-CCh---hHHHhhhHHHHHHHHHHHHhhcCC----CcEEEEEe
Q 019990 76 VEAC----K-----DVN--IAVMVGGFPRKE-----G-MER---KDVMSKNVSIYKAQASALEKHAAP----NCKVLVVA 131 (332)
Q Consensus 76 ~~a~----~-----~aD--iVi~~ag~~~~~-----~-~~~---~~~~~~N~~~~~~i~~~i~~~~~~----~~~viv~s 131 (332)
.+++ + ..| ++|+.||..... . .+. ...+..|+.....+.+.+..+-.. .+++|++|
T Consensus 76 ~~~~~~~~~~~~~g~~d~~~lvnnAg~~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~~~g~iv~is 155 (259)
T 1oaa_A 76 QRLLSAVRELPRPEGLQRLLLINNAATLGDVSKGFLNVNDLAEVNNYWALNLTSMLCLTSGTLNAFQDSPGLSKTVVNIS 155 (259)
T ss_dssp HHHHHHHHHSCCCTTCCEEEEEECCCCCCCCSSCGGGCCCHHHHHHHHHHHTHHHHHHHHHHHHTSCCCTTCEEEEEEEC
T ss_pred HHHHHHHHhccccccCCccEEEECCcccCCCCcchhccCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCceEEEEc
Confidence 2222 1 357 999999974321 1 222 235677888887877777654311 25677777
Q ss_pred CChhhHHHHHHHHCCCCCCCcEEEeecccHHHHHHHHHHHcCCCCCCeeeeEEEec
Q 019990 132 NPANTNALILKEFAPSIPAKNITCLTRLDHNRAMGQISERLKVHVSDVKNVIIWGN 187 (332)
Q Consensus 132 np~~~~~~~~~~~~~~~~~~~i~~~t~l~~~r~~~~~a~~~~v~~~~v~~~~V~G~ 187 (332)
+.... .+.+....|+.+|.....+.+.++..+. + |+. +.+.+
T Consensus 156 S~~~~---------~~~~~~~~Y~asKaa~~~~~~~la~e~~--~--i~v-n~v~P 197 (259)
T 1oaa_A 156 SLCAL---------QPYKGWGLYCAGKAARDMLYQVLAAEEP--S--VRV-LSYAP 197 (259)
T ss_dssp CGGGT---------SCCTTCHHHHHHHHHHHHHHHHHHHHCT--T--EEE-EEEEC
T ss_pred Cchhc---------CCCCCccHHHHHHHHHHHHHHHHHhhCC--C--ceE-EEecC
Confidence 64321 2334444678888888888888888875 2 774 33443
|
| >3gk3_A Acetoacetyl-COA reductase; acetoacetyl-CO reductase, oxidoreductase, structural genomics; 2.10A {Burkholderia pseudomallei 1710B} | Back alignment and structure |
|---|
Probab=98.41 E-value=4.2e-07 Score=80.71 Aligned_cols=159 Identities=11% Similarity=0.092 Sum_probs=93.0
Q ss_pred CCcEEEEEcCCChhHHHHHHHHHhcccCCCCCCeEEEEEecccchhhhhhhHhhhhhhcc---CCccceEEeCCHHHHh-
Q 019990 4 NPLRVLVTGAAGQIGYALVPMIARGIMLGPDQPVILHMLDIEPAAEALNGVKMELIDAAF---PLLKGVVATTDVVEAC- 79 (332)
Q Consensus 4 ~~~kI~VtGaaG~IGs~l~~~L~~~~~~~~~~~~~i~l~D~~~~~~~~~~~~~dl~~~~~---~~~~~v~~~~~~~~a~- 79 (332)
+.++++||||+|+||.+++..|++.|. +|++.+.+.. +.+......+..... ....|++...++.+++
T Consensus 24 ~~k~vlITGas~gIG~~~a~~l~~~G~-------~v~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~v~~~~~ 95 (269)
T 3gk3_A 24 AKRVAFVTGGMGGLGAAISRRLHDAGM-------AVAVSHSERN-DHVSTWLMHERDAGRDFKAYAVDVADFESCERCAE 95 (269)
T ss_dssp CCCEEEETTTTSHHHHHHHHHHHTTTC-------EEEEEECSCH-HHHHHHHHHHHTTTCCCEEEECCTTCHHHHHHHHH
T ss_pred cCCEEEEECCCchHHHHHHHHHHHCCC-------EEEEEcCCch-HHHHHHHHHHHhcCCceEEEEecCCCHHHHHHHHH
Confidence 346789999999999999999999885 7888885432 222222222222110 1123443333333333
Q ss_pred ------CCCcEEEEecCCCCCC---CCChh---HHHhhhHHHHHHHHHHHHhhc--CCCcEEEEEeCChhhHHHHHHHHC
Q 019990 80 ------KDVNIAVMVGGFPRKE---GMERK---DVMSKNVSIYKAQASALEKHA--APNCKVLVVANPANTNALILKEFA 145 (332)
Q Consensus 80 ------~~aDiVi~~ag~~~~~---~~~~~---~~~~~N~~~~~~i~~~i~~~~--~~~~~viv~snp~~~~~~~~~~~~ 145 (332)
...|++|+.||..... ..+.+ ..+..|+.....+.+.+...- ...+++|++|+....
T Consensus 96 ~~~~~~g~id~li~nAg~~~~~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~~g~iv~isS~~~~--------- 166 (269)
T 3gk3_A 96 KVLADFGKVDVLINNAGITRDATFMKMTKGDWDAVMRTDLDAMFNVTKQFIAGMVERRFGRIVNIGSVNGS--------- 166 (269)
T ss_dssp HHHHHHSCCSEEEECCCCCCCBCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCHHHH---------
T ss_pred HHHHHcCCCCEEEECCCcCCCcchhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCEEEEeCChhhc---------
Confidence 3789999999975321 12222 356677766655555543310 124677777763221
Q ss_pred CCCCCCcEEEeecccHHHHHHHHHHHcCCCCCCeee
Q 019990 146 PSIPAKNITCLTRLDHNRAMGQISERLKVHVSDVKN 181 (332)
Q Consensus 146 ~~~~~~~i~~~t~l~~~r~~~~~a~~~~v~~~~v~~ 181 (332)
.+.+....|+.+|.....+...+++.+. +..|+.
T Consensus 167 ~~~~~~~~Y~asKaa~~~~~~~la~e~~--~~gi~v 200 (269)
T 3gk3_A 167 RGAFGQANYASAKAGIHGFTKTLALETA--KRGITV 200 (269)
T ss_dssp HCCTTBHHHHHHHHHHHHHHHHHHHHHG--GGTEEE
T ss_pred cCCCCcchHHHHHHHHHHHHHHHHHHhh--hcCCEE
Confidence 1234444678888888888888888764 334654
|
| >3e03_A Short chain dehydrogenase; structural genomics, PSI-2, protein structure initiative, NEW YORK structural genomix research consortium; 1.69A {Xanthomonas campestris PV} | Back alignment and structure |
|---|
Probab=98.40 E-value=1.1e-06 Score=78.39 Aligned_cols=165 Identities=18% Similarity=0.121 Sum_probs=95.4
Q ss_pred CCCCCcEEEEEcCCChhHHHHHHHHHhcccCCCCCCeEEEEEecccch-h----hhhhhHhhhhhhc---cCCccceEEe
Q 019990 1 MAKNPLRVLVTGAAGQIGYALVPMIARGIMLGPDQPVILHMLDIEPAA-E----ALNGVKMELIDAA---FPLLKGVVAT 72 (332)
Q Consensus 1 m~~~~~kI~VtGaaG~IGs~l~~~L~~~~~~~~~~~~~i~l~D~~~~~-~----~~~~~~~dl~~~~---~~~~~~v~~~ 72 (332)
|+.+.++++||||+|.||.+++..|++.|. +|++.|++... + .+.....++.... .....|++..
T Consensus 2 ~~l~~k~~lVTGas~GIG~aia~~la~~G~-------~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~ 74 (274)
T 3e03_A 2 LTLSGKTLFITGASRGIGLAIALRAARDGA-------NVAIAAKSAVANPKLPGTIHSAAAAVNAAGGQGLALKCDIREE 74 (274)
T ss_dssp CCCTTCEEEEETTTSHHHHHHHHHHHHTTC-------EEEEEESCCSCCTTSCCCHHHHHHHHHHHTSEEEEEECCTTCH
T ss_pred CCCCCcEEEEECCCChHHHHHHHHHHHCCC-------EEEEEeccchhhhhhHHHHHHHHHHHHhcCCeEEEEeCCCCCH
Confidence 566778999999999999999999999885 89999986421 0 1111222222111 0112344333
Q ss_pred CCHHHHh-------CCCcEEEEecCCCCCC---CCCh---hHHHhhhHHHHHHHHHHHHhhc--CCCcEEEEEeCChhhH
Q 019990 73 TDVVEAC-------KDVNIAVMVGGFPRKE---GMER---KDVMSKNVSIYKAQASALEKHA--APNCKVLVVANPANTN 137 (332)
Q Consensus 73 ~~~~~a~-------~~aDiVi~~ag~~~~~---~~~~---~~~~~~N~~~~~~i~~~i~~~~--~~~~~viv~snp~~~~ 137 (332)
.++.+.+ ...|++|+.||..... ..+. ...++.|+.....+.+.+..+- ...+++|++|+.....
T Consensus 75 ~~v~~~~~~~~~~~g~iD~lvnnAG~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~m~~~~~g~iv~isS~~~~~ 154 (274)
T 3e03_A 75 DQVRAAVAATVDTFGGIDILVNNASAIWLRGTLDTPMKRFDLMQQVNARGSFVCAQACLPHLLQAPNPHILTLAPPPSLN 154 (274)
T ss_dssp HHHHHHHHHHHHHHSCCCEEEECCCCCCCCCGGGSCHHHHHHHHHHTHHHHHHHHHHHHHHHTTSSSCEEEECCCCCCCC
T ss_pred HHHHHHHHHHHHHcCCCCEEEECCCcccCCCcccCCHHHHHHHHhHhhHhHHHHHHHHHHHHHhcCCceEEEECChHhcC
Confidence 3333332 3789999999974321 1222 2356778877766666554321 1245777777643221
Q ss_pred HHHHHHHCCCCCCCcEEEeecccHHHHHHHHHHHcCCCCCCeee
Q 019990 138 ALILKEFAPSIPAKNITCLTRLDHNRAMGQISERLKVHVSDVKN 181 (332)
Q Consensus 138 ~~~~~~~~~~~~~~~i~~~t~l~~~r~~~~~a~~~~v~~~~v~~ 181 (332)
... ++....|+.+|.....+.+.+++.++ +..|+.
T Consensus 155 ~~~-------~~~~~~Y~asKaal~~l~~~la~e~~--~~gI~v 189 (274)
T 3e03_A 155 PAW-------WGAHTGYTLAKMGMSLVTLGLAAEFG--PQGVAI 189 (274)
T ss_dssp HHH-------HHHCHHHHHHHHHHHHHHHHHHHHHG--GGTCEE
T ss_pred CCC-------CCCCchHHHHHHHHHHHHHHHHHHhh--hcCEEE
Confidence 100 01112356677777788888888764 344653
|
| >3gdg_A Probable NADP-dependent mannitol dehydrogenase; rossmann fold, beta-alpha-beta motifs, open twisted sheet, A NADP, oxidoreductase; 2.30A {Cladosporium herbarum} SCOP: c.2.1.0 PDB: 3gdf_A | Back alignment and structure |
|---|
Probab=98.39 E-value=6.5e-07 Score=79.22 Aligned_cols=152 Identities=11% Similarity=0.054 Sum_probs=92.4
Q ss_pred CCcEEEEEcCC--ChhHHHHHHHHHhcccCCCCCCeEEEEEecccchhhhhhhHhhhhhh---c-cCCccceEEeCCHHH
Q 019990 4 NPLRVLVTGAA--GQIGYALVPMIARGIMLGPDQPVILHMLDIEPAAEALNGVKMELIDA---A-FPLLKGVVATTDVVE 77 (332)
Q Consensus 4 ~~~kI~VtGaa--G~IGs~l~~~L~~~~~~~~~~~~~i~l~D~~~~~~~~~~~~~dl~~~---~-~~~~~~v~~~~~~~~ 77 (332)
+.++|+||||+ |+||.+++..|++.|. ++.+++.+... .......++... . .....|++...++.+
T Consensus 19 ~~k~vlITGas~~~giG~~~a~~l~~~G~-------~v~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~~Dl~~~~~v~~ 90 (267)
T 3gdg_A 19 KGKVVVVTGASGPKGMGIEAARGCAEMGA-------AVAITYASRAQ-GAEENVKELEKTYGIKAKAYKCQVDSYESCEK 90 (267)
T ss_dssp TTCEEEETTCCSSSSHHHHHHHHHHHTSC-------EEEECBSSSSS-HHHHHHHHHHHHHCCCEECCBCCTTCHHHHHH
T ss_pred CCCEEEEECCCCCCChHHHHHHHHHHCCC-------eEEEEeCCcch-hHHHHHHHHHHhcCCceeEEecCCCCHHHHHH
Confidence 45789999999 8999999999999885 78888875421 112222333211 1 112234444333333
Q ss_pred Hh-------CCCcEEEEecCCCCCC---CCCh---hHHHhhhHHHHHHHHHHH----HhhcCCCcEEEEEeCChhhHHHH
Q 019990 78 AC-------KDVNIAVMVGGFPRKE---GMER---KDVMSKNVSIYKAQASAL----EKHAAPNCKVLVVANPANTNALI 140 (332)
Q Consensus 78 a~-------~~aDiVi~~ag~~~~~---~~~~---~~~~~~N~~~~~~i~~~i----~~~~~~~~~viv~snp~~~~~~~ 140 (332)
++ ...|++||.||..... ..+. ...++.|+.....+.+.+ ++.. ..++|++++.....
T Consensus 91 ~~~~~~~~~g~id~li~nAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~--~g~iv~isS~~~~~--- 165 (267)
T 3gdg_A 91 LVKDVVADFGQIDAFIANAGATADSGILDGSVEAWNHVVQVDLNGTFHCAKAVGHHFKERG--TGSLVITASMSGHI--- 165 (267)
T ss_dssp HHHHHHHHTSCCSEEEECCCCCCCSCTTTSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHT--CCEEEEECCGGGTS---
T ss_pred HHHHHHHHcCCCCEEEECCCcCCCCCcccCCHHHHHHHHHhcchHHHHHHHHHHHHHHHcC--CceEEEEccccccc---
Confidence 33 3679999999975321 1222 235667776665555554 4442 35777777643211
Q ss_pred HHHHCCCCC-CCcEEEeecccHHHHHHHHHHHcC
Q 019990 141 LKEFAPSIP-AKNITCLTRLDHNRAMGQISERLK 173 (332)
Q Consensus 141 ~~~~~~~~~-~~~i~~~t~l~~~r~~~~~a~~~~ 173 (332)
...+ ....|+.+|.....+.+.+++.++
T Consensus 166 -----~~~~~~~~~Y~~sK~a~~~~~~~la~e~~ 194 (267)
T 3gdg_A 166 -----ANFPQEQTSYNVAKAGCIHMARSLANEWR 194 (267)
T ss_dssp -----CCSSSCCHHHHHHHHHHHHHHHHHHHHTT
T ss_pred -----cCCCCCCCcchHHHHHHHHHHHHHHHHhc
Confidence 1222 233678888888889999999886
|
| >4fgs_A Probable dehydrogenase protein; PSI-biology, nysgrc, structural genomics, NEW YORK structura genomics research consortium, three layer; 1.76A {Rhizobium etli} | Back alignment and structure |
|---|
Probab=98.38 E-value=1.5e-06 Score=77.44 Aligned_cols=162 Identities=12% Similarity=0.097 Sum_probs=101.9
Q ss_pred CcEEEEEcCCChhHHHHHHHHHhcccCCCCCCeEEEEEecccchhhhhhhHhhhhhhccCCccceEEeCCHHHH------
Q 019990 5 PLRVLVTGAAGQIGYALVPMIARGIMLGPDQPVILHMLDIEPAAEALNGVKMELIDAAFPLLKGVVATTDVVEA------ 78 (332)
Q Consensus 5 ~~kI~VtGaaG~IGs~l~~~L~~~~~~~~~~~~~i~l~D~~~~~~~~~~~~~dl~~~~~~~~~~v~~~~~~~~a------ 78 (332)
.+.++||||++-||.+++..|++.|. +|++.|++. +.++....++......+..|++...++.+.
T Consensus 29 gKvalVTGas~GIG~aiA~~la~~Ga-------~V~i~~r~~--~~l~~~~~~~g~~~~~~~~Dv~~~~~v~~~~~~~~~ 99 (273)
T 4fgs_A 29 AKIAVITGATSGIGLAAAKRFVAEGA-------RVFITGRRK--DVLDAAIAEIGGGAVGIQADSANLAELDRLYEKVKA 99 (273)
T ss_dssp TCEEEEESCSSHHHHHHHHHHHHTTC-------EEEEEESCH--HHHHHHHHHHCTTCEEEECCTTCHHHHHHHHHHHHH
T ss_pred CCEEEEeCcCCHHHHHHHHHHHHCCC-------EEEEEECCH--HHHHHHHHHcCCCeEEEEecCCCHHHHHHHHHHHHH
Confidence 45689999999999999999999886 899999864 445544444432111222344443333322
Q ss_pred -hCCCcEEEEecCCCCC-C--CCChh---HHHhhhHHHHHHHHHHHHhhcCCCcEEEEEeCChhhHHHHHHHHCCCCCCC
Q 019990 79 -CKDVNIAVMVGGFPRK-E--GMERK---DVMSKNVSIYKAQASALEKHAAPNCKVLVVANPANTNALILKEFAPSIPAK 151 (332)
Q Consensus 79 -~~~aDiVi~~ag~~~~-~--~~~~~---~~~~~N~~~~~~i~~~i~~~~~~~~~viv~snp~~~~~~~~~~~~~~~~~~ 151 (332)
+-..|++|..||.... + +.+.+ ..++.|+...-.+.+++..+-...+.+|++++-... .+.|..
T Consensus 100 ~~G~iDiLVNNAG~~~~~~~~~~~~e~w~~~~~vNl~g~~~~~~~~~p~m~~~G~IInisS~~~~---------~~~~~~ 170 (273)
T 4fgs_A 100 EAGRIDVLFVNAGGGSMLPLGEVTEEQYDDTFDRNVKGVLFTVQKALPLLARGSSVVLTGSTAGS---------TGTPAF 170 (273)
T ss_dssp HHSCEEEEEECCCCCCCCCTTSCCHHHHHHHHHHHTHHHHHHHHHHTTTEEEEEEEEEECCGGGG---------SCCTTC
T ss_pred HcCCCCEEEECCCCCCCCChhhccHHHHHHHHHHHhHHHHHHHHHHHHHHhhCCeEEEEeehhhc---------cCCCCc
Confidence 3367999999987432 1 22332 356778777766666655543234566776653221 233333
Q ss_pred cEEEeecccHHHHHHHHHHHcCCCCCCeeeeEEEec
Q 019990 152 NITCLTRLDHNRAMGQISERLKVHVSDVKNVIIWGN 187 (332)
Q Consensus 152 ~i~~~t~l~~~r~~~~~a~~~~v~~~~v~~~~V~G~ 187 (332)
..|+.+|-.-..+.+.+|..++ +..||. +.+-+
T Consensus 171 ~~Y~asKaav~~ltr~lA~Ela--~~gIrV-N~V~P 203 (273)
T 4fgs_A 171 SVYAASKAALRSFARNWILDLK--DRGIRI-NTLSP 203 (273)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTT--TSCEEE-EEEEE
T ss_pred hHHHHHHHHHHHHHHHHHHHhc--ccCeEE-EEEee
Confidence 4677778777788888888876 677884 55565
|
| >3e9n_A Putative short-chain dehydrogenase/reductase; structural genomics, unknown function, oxidoreductase, PSI- 2; 2.40A {Corynebacterium glutamicum} | Back alignment and structure |
|---|
Probab=98.37 E-value=7.2e-07 Score=77.96 Aligned_cols=155 Identities=19% Similarity=0.233 Sum_probs=78.1
Q ss_pred CCCCCcEEEEEcCCChhHHHHHHHHHhcccCCCCCCeEEEEEecccchhhhhhhHhhhhhhccCCccceEEe------CC
Q 019990 1 MAKNPLRVLVTGAAGQIGYALVPMIARGIMLGPDQPVILHMLDIEPAAEALNGVKMELIDAAFPLLKGVVAT------TD 74 (332)
Q Consensus 1 m~~~~~kI~VtGaaG~IGs~l~~~L~~~~~~~~~~~~~i~l~D~~~~~~~~~~~~~dl~~~~~~~~~~v~~~------~~ 74 (332)
|+.+.++|+||||+|+||++++..|++ +. .+++++++. +.+.... ++.... ....++... ..
T Consensus 1 m~l~~k~vlITGas~gIG~~~a~~l~~-g~-------~v~~~~r~~--~~~~~~~-~~~~~~-~~~~D~~~~~~~~~~~~ 68 (245)
T 3e9n_A 1 MSLKKKIAVVTGATGGMGIEIVKDLSR-DH-------IVYALGRNP--EHLAALA-EIEGVE-PIESDIVKEVLEEGGVD 68 (245)
T ss_dssp -----CEEEEESTTSHHHHHHHHHHTT-TS-------EEEEEESCH--HHHHHHH-TSTTEE-EEECCHHHHHHTSSSCG
T ss_pred CCCCCCEEEEEcCCCHHHHHHHHHHhC-CC-------eEEEEeCCH--HHHHHHH-hhcCCc-ceecccchHHHHHHHHH
Confidence 666778999999999999999999976 53 788888753 2222111 111100 001111111 11
Q ss_pred HHHHhCCCcEEEEecCCCCCCC---CCh---hHHHhhhHHHHHHH----HHHHHhhcCCCcEEEEEeCChhhHHHHHHHH
Q 019990 75 VVEACKDVNIAVMVGGFPRKEG---MER---KDVMSKNVSIYKAQ----ASALEKHAAPNCKVLVVANPANTNALILKEF 144 (332)
Q Consensus 75 ~~~a~~~aDiVi~~ag~~~~~~---~~~---~~~~~~N~~~~~~i----~~~i~~~~~~~~~viv~snp~~~~~~~~~~~ 144 (332)
..+.+...|++|+.||...... .+. ...++.|+.....+ ++.+++. .+++|++|+....
T Consensus 69 ~~~~~~~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~---~g~iv~isS~~~~-------- 137 (245)
T 3e9n_A 69 KLKNLDHVDTLVHAAAVARDTTIEAGSVAEWHAHLDLNVIVPAELSRQLLPALRAA---SGCVIYINSGAGN-------- 137 (245)
T ss_dssp GGTTCSCCSEEEECC----------CHHHHHHHHHHHHTHHHHHHHHHHHHHHHHH---TCEEEEEC-------------
T ss_pred HHHhcCCCCEEEECCCcCCCCchhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHhhc---CCeEEEEcCcccc--------
Confidence 1122347899999999743211 122 23456677664444 4444443 2466777753321
Q ss_pred CCCCCCCcEEEeecccHHHHHHHHHHHcCCCCCCeee
Q 019990 145 APSIPAKNITCLTRLDHNRAMGQISERLKVHVSDVKN 181 (332)
Q Consensus 145 ~~~~~~~~i~~~t~l~~~r~~~~~a~~~~v~~~~v~~ 181 (332)
.+.+....|+.+|.....+...+++.++ +..|+.
T Consensus 138 -~~~~~~~~Y~asK~a~~~~~~~la~e~~--~~gi~v 171 (245)
T 3e9n_A 138 -GPHPGNTIYAASKHALRGLADAFRKEEA--NNGIRV 171 (245)
T ss_dssp ------CHHHHHHHHHHHHHHHHHHHHHG--GGTCEE
T ss_pred -cCCCCchHHHHHHHHHHHHHHHHHHHhh--hcCeEE
Confidence 1223334678888888888888888764 334553
|
| >3qlj_A Short chain dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, tuberculosis; 1.80A {Mycobacterium avium} | Back alignment and structure |
|---|
Probab=98.37 E-value=2.6e-07 Score=84.45 Aligned_cols=159 Identities=16% Similarity=0.062 Sum_probs=94.3
Q ss_pred CcEEEEEcCCChhHHHHHHHHHhcccCCCCCCeEEEEEecccc--------hhhhhhhHhhhhhhc---cCCccceEEeC
Q 019990 5 PLRVLVTGAAGQIGYALVPMIARGIMLGPDQPVILHMLDIEPA--------AEALNGVKMELIDAA---FPLLKGVVATT 73 (332)
Q Consensus 5 ~~kI~VtGaaG~IGs~l~~~L~~~~~~~~~~~~~i~l~D~~~~--------~~~~~~~~~dl~~~~---~~~~~~v~~~~ 73 (332)
.++++||||+|+||.+++..|++.|. +|++.|++.. .+.+.....++.... .....|++...
T Consensus 27 gk~vlVTGas~GIG~aia~~la~~G~-------~Vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~d~~ 99 (322)
T 3qlj_A 27 GRVVIVTGAGGGIGRAHALAFAAEGA-------RVVVNDIGVGLDGSPASGGSAAQSVVDEITAAGGEAVADGSNVADWD 99 (322)
T ss_dssp TCEEEETTTTSHHHHHHHHHHHHTTC-------EEEEECCCBCTTSSBTCTTSHHHHHHHHHHHTTCEEEEECCCTTSHH
T ss_pred CCEEEEECCCcHHHHHHHHHHHHCCC-------EEEEEeCcccccccccccHHHHHHHHHHHHhcCCcEEEEECCCCCHH
Confidence 46799999999999999999999885 8999987510 112232333332211 11123444333
Q ss_pred CHHHHhC-------CCcEEEEecCCCCCC---CCCh---hHHHhhhHHHHHHHHHHHHhhc--------CCCcEEEEEeC
Q 019990 74 DVVEACK-------DVNIAVMVGGFPRKE---GMER---KDVMSKNVSIYKAQASALEKHA--------APNCKVLVVAN 132 (332)
Q Consensus 74 ~~~~a~~-------~aDiVi~~ag~~~~~---~~~~---~~~~~~N~~~~~~i~~~i~~~~--------~~~~~viv~sn 132 (332)
++.+.++ ..|++|+.||..... ..+. ...++.|+.....+.+.+..+- ...+++|++|+
T Consensus 100 ~v~~~~~~~~~~~g~iD~lv~nAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~~~~~~~~~~~~~~~~g~IV~isS 179 (322)
T 3qlj_A 100 QAAGLIQTAVETFGGLDVLVNNAGIVRDRMIANTSEEEFDAVIAVHLKGHFATMRHAAAYWRGLSKAGKAVDGRIINTSS 179 (322)
T ss_dssp HHHHHHHHHHHHHSCCCEEECCCCCCCCCCGGGCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCCEEEEEECC
T ss_pred HHHHHHHHHHHHcCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHccccCCCCCcEEEEEcC
Confidence 3333333 789999999975321 1222 2356778877666665553331 01257777775
Q ss_pred ChhhHHHHHHHHCCCCCCCcEEEeecccHHHHHHHHHHHcCCCCCCeee
Q 019990 133 PANTNALILKEFAPSIPAKNITCLTRLDHNRAMGQISERLKVHVSDVKN 181 (332)
Q Consensus 133 p~~~~~~~~~~~~~~~~~~~i~~~t~l~~~r~~~~~a~~~~v~~~~v~~ 181 (332)
.... .+.+....|+.+|.....+.+.++..++ +..|+.
T Consensus 180 ~~~~---------~~~~~~~~Y~asKaal~~l~~~la~e~~--~~gI~v 217 (322)
T 3qlj_A 180 GAGL---------QGSVGQGNYSAAKAGIATLTLVGAAEMG--RYGVTV 217 (322)
T ss_dssp HHHH---------HCBTTCHHHHHHHHHHHHHHHHHHHHHG--GGTEEE
T ss_pred HHHc---------cCCCCCccHHHHHHHHHHHHHHHHHHhc--ccCcEE
Confidence 3221 1233334678888888888888888864 345664
|
| >3ged_A Short-chain dehydrogenase/reductase SDR; SCOR, rossmann fold, oxidoreductase; 1.70A {Clostridium thermocellum atcc 27405} PDB: 3geg_A* | Back alignment and structure |
|---|
Probab=98.34 E-value=1.9e-06 Score=75.60 Aligned_cols=156 Identities=15% Similarity=0.103 Sum_probs=94.7
Q ss_pred cEEEEEcCCChhHHHHHHHHHhcccCCCCCCeEEEEEecccchhhhhhhHhhhhhhccCCccceEEeCCHH-------HH
Q 019990 6 LRVLVTGAAGQIGYALVPMIARGIMLGPDQPVILHMLDIEPAAEALNGVKMELIDAAFPLLKGVVATTDVV-------EA 78 (332)
Q Consensus 6 ~kI~VtGaaG~IGs~l~~~L~~~~~~~~~~~~~i~l~D~~~~~~~~~~~~~dl~~~~~~~~~~v~~~~~~~-------~a 78 (332)
++|+||||++.||.+++..|++.|. +|++.|++. +.+.....+.... ..+..|++...+.. +.
T Consensus 3 K~vlVTGas~GIG~aia~~la~~Ga-------~V~~~~~~~--~~~~~~~~~~~~~-~~~~~Dv~~~~~v~~~v~~~~~~ 72 (247)
T 3ged_A 3 RGVIVTGGGHGIGKQICLDFLEAGD-------KVCFIDIDE--KRSADFAKERPNL-FYFHGDVADPLTLKKFVEYAMEK 72 (247)
T ss_dssp CEEEEESTTSHHHHHHHHHHHHTTC-------EEEEEESCH--HHHHHHHTTCTTE-EEEECCTTSHHHHHHHHHHHHHH
T ss_pred CEEEEecCCCHHHHHHHHHHHHCCC-------EEEEEeCCH--HHHHHHHHhcCCE-EEEEecCCCHHHHHHHHHHHHHH
Confidence 5699999999999999999999886 899999863 2333222222111 11223443333222 23
Q ss_pred hCCCcEEEEecCCCCCC---CCChh---HHHhhhHHHHHHHH----HHHHhhcCCCcEEEEEeCChhhHHHHHHHHCCCC
Q 019990 79 CKDVNIAVMVGGFPRKE---GMERK---DVMSKNVSIYKAQA----SALEKHAAPNCKVLVVANPANTNALILKEFAPSI 148 (332)
Q Consensus 79 ~~~aDiVi~~ag~~~~~---~~~~~---~~~~~N~~~~~~i~----~~i~~~~~~~~~viv~snp~~~~~~~~~~~~~~~ 148 (332)
+...|++|+.||..... ..+.+ ..++.|+...-.+. +.+.+. .+.+|++++-... .+.
T Consensus 73 ~g~iDiLVNNAG~~~~~~~~~~~~e~~~~~~~vNl~g~~~~~~~~~~~m~~~---~G~IInisS~~~~---------~~~ 140 (247)
T 3ged_A 73 LQRIDVLVNNACRGSKGILSSLLYEEFDYILSVGLKAPYELSRLCRDELIKN---KGRIINIASTRAF---------QSE 140 (247)
T ss_dssp HSCCCEEEECCCCCCCCGGGTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHT---TCEEEEECCGGGT---------SCC
T ss_pred cCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHhhc---CCcEEEEeecccc---------cCC
Confidence 45789999999874321 22322 34667776554444 444432 3577777753221 223
Q ss_pred CCCcEEEeecccHHHHHHHHHHHcCCCCCCeeeeEEEec
Q 019990 149 PAKNITCLTRLDHNRAMGQISERLKVHVSDVKNVIIWGN 187 (332)
Q Consensus 149 ~~~~i~~~t~l~~~r~~~~~a~~~~v~~~~v~~~~V~G~ 187 (332)
|..-.|+.+|-.-..+.+.+|..++ + .|| ++.+.+
T Consensus 141 ~~~~~Y~asKaal~~ltk~lA~ela--~-~Ir-VN~I~P 175 (247)
T 3ged_A 141 PDSEAYASAKGGIVALTHALAMSLG--P-DVL-VNCIAP 175 (247)
T ss_dssp TTCHHHHHHHHHHHHHHHHHHHHHT--T-TSE-EEEEEE
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHC--C-CCE-EEEEec
Confidence 3333577778777888888999987 4 677 455554
|
| >4fn4_A Short chain dehydrogenase; NADH-binding, rossmann fold, oxidoreductase; HET: NAD; 1.75A {Sulfolobus acidocaldarius} | Back alignment and structure |
|---|
Probab=98.34 E-value=3.6e-06 Score=74.20 Aligned_cols=163 Identities=17% Similarity=0.127 Sum_probs=102.2
Q ss_pred CCCCcEEEEEcCCChhHHHHHHHHHhcccCCCCCCeEEEEEecccchhhhhhhHhhhhhhcc---CCccceEEeCCHHH-
Q 019990 2 AKNPLRVLVTGAAGQIGYALVPMIARGIMLGPDQPVILHMLDIEPAAEALNGVKMELIDAAF---PLLKGVVATTDVVE- 77 (332)
Q Consensus 2 ~~~~~kI~VtGaaG~IGs~l~~~L~~~~~~~~~~~~~i~l~D~~~~~~~~~~~~~dl~~~~~---~~~~~v~~~~~~~~- 77 (332)
+-+.+.++||||++-||.+++..|++.|. .|+++|++. +.++....++..... .+..|++...+..+
T Consensus 4 sL~gKvalVTGas~GIG~aiA~~la~~Ga-------~Vv~~~~~~--~~~~~~~~~i~~~g~~~~~~~~Dvt~~~~v~~~ 74 (254)
T 4fn4_A 4 SLKNKVVIVTGAGSGIGRAIAKKFALNDS-------IVVAVELLE--DRLNQIVQELRGMGKEVLGVKADVSKKKDVEEF 74 (254)
T ss_dssp GGTTCEEEEETTTSHHHHHHHHHHHHTTC-------EEEEEESCH--HHHHHHHHHHHHTTCCEEEEECCTTSHHHHHHH
T ss_pred CCCCCEEEEeCCCCHHHHHHHHHHHHcCC-------EEEEEECCH--HHHHHHHHHHHhcCCcEEEEEccCCCHHHHHHH
Confidence 34567899999999999999999999885 899999864 455555555543211 12234444333332
Q ss_pred ------HhCCCcEEEEecCCCC--CC--CCChh---HHHhhhHHHH----HHHHHHHHhhcCCCcEEEEEeCChhhHHHH
Q 019990 78 ------ACKDVNIAVMVGGFPR--KE--GMERK---DVMSKNVSIY----KAQASALEKHAAPNCKVLVVANPANTNALI 140 (332)
Q Consensus 78 ------a~~~aDiVi~~ag~~~--~~--~~~~~---~~~~~N~~~~----~~i~~~i~~~~~~~~~viv~snp~~~~~~~ 140 (332)
.+-..|++|+.||... .+ ..+.+ ..++.|+... +..++.+.+.+ .+.+|++++-...
T Consensus 75 ~~~~~~~~G~iDiLVNNAGi~~~~~~~~~~~~e~~~~~~~vNl~g~~~~~~~~~p~m~~~~--~G~IVnisS~~g~---- 148 (254)
T 4fn4_A 75 VRRTFETYSRIDVLCNNAGIMDGVTPVAEVSDELWERVLAVNLYSAFYSSRAVIPIMLKQG--KGVIVNTASIAGI---- 148 (254)
T ss_dssp HHHHHHHHSCCCEEEECCCCCCTTCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHT--CEEEEEECCGGGT----
T ss_pred HHHHHHHcCCCCEEEECCcccCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcC--CcEEEEEechhhc----
Confidence 2347899999999632 22 22333 2456676554 55566666553 5678888763221
Q ss_pred HHHHCCCCCCCcEEEeecccHHHHHHHHHHHcCCCCCCeeeeEEEec
Q 019990 141 LKEFAPSIPAKNITCLTRLDHNRAMGQISERLKVHVSDVKNVIIWGN 187 (332)
Q Consensus 141 ~~~~~~~~~~~~i~~~t~l~~~r~~~~~a~~~~v~~~~v~~~~V~G~ 187 (332)
.+.+..-.|+.+|-.-..+.+.+|..++ +..||. +.+-+
T Consensus 149 -----~~~~~~~~Y~asKaal~~ltr~lA~ela--~~gIrV-N~V~P 187 (254)
T 4fn4_A 149 -----RGGFAGAPYTVAKHGLIGLTRSIAAHYG--DQGIRA-VAVLP 187 (254)
T ss_dssp -----CSSSSCHHHHHHHHHHHHHHHHHHHHHG--GGTEEE-EEEEE
T ss_pred -----CCCCCChHHHHHHHHHHHHHHHHHHHhh--hhCeEE-EEEEe
Confidence 1233333567777777778888888876 566774 54454
|
| >3o26_A Salutaridine reductase; short chain dehydrogenase/reductases, oxidoreductase; HET: NDP; 1.91A {Papaver somniferum} SCOP: c.2.1.0 | Back alignment and structure |
|---|
Probab=98.33 E-value=9.1e-07 Score=79.71 Aligned_cols=160 Identities=12% Similarity=0.123 Sum_probs=92.5
Q ss_pred CcEEEEEcCCChhHHHHHHHHHhcccCCCCCCeEEEEEecccchhhhhhhHhhhhhhcc----CCccceEEe-CCHHHH-
Q 019990 5 PLRVLVTGAAGQIGYALVPMIARGIMLGPDQPVILHMLDIEPAAEALNGVKMELIDAAF----PLLKGVVAT-TDVVEA- 78 (332)
Q Consensus 5 ~~kI~VtGaaG~IGs~l~~~L~~~~~~~~~~~~~i~l~D~~~~~~~~~~~~~dl~~~~~----~~~~~v~~~-~~~~~a- 78 (332)
.++|+||||+|+||.+++..|++.|. +|++.+++. +.+.....++..... ....|++.. .++.++
T Consensus 12 ~k~vlITGas~GIG~~~a~~L~~~G~-------~V~~~~r~~--~~~~~~~~~l~~~~~~~~~~~~~Dl~~~~~~v~~~~ 82 (311)
T 3o26_A 12 RRCAVVTGGNKGIGFEICKQLSSNGI-------MVVLTCRDV--TKGHEAVEKLKNSNHENVVFHQLDVTDPIATMSSLA 82 (311)
T ss_dssp CCEEEESSCSSHHHHHHHHHHHHTTC-------EEEEEESCH--HHHHHHHHHHHTTTCCSEEEEECCTTSCHHHHHHHH
T ss_pred CcEEEEecCCchHHHHHHHHHHHCCC-------EEEEEeCCH--HHHHHHHHHHHhcCCCceEEEEccCCCcHHHHHHHH
Confidence 46799999999999999999999885 899999864 233333334432110 111233332 222222
Q ss_pred ------hCCCcEEEEecCCCCCC---------------------------------CCCh---hHHHhhhHHHHHHHHHH
Q 019990 79 ------CKDVNIAVMVGGFPRKE---------------------------------GMER---KDVMSKNVSIYKAQASA 116 (332)
Q Consensus 79 ------~~~aDiVi~~ag~~~~~---------------------------------~~~~---~~~~~~N~~~~~~i~~~ 116 (332)
+...|++|+.||..... ..+. ...++.|+.....+.+.
T Consensus 83 ~~~~~~~g~iD~lv~nAg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~ 162 (311)
T 3o26_A 83 DFIKTHFGKLDILVNNAGVAGFSVDADRFKAMISDIGEDSEELVKIYEKPEAQELMSETYELAEECLKINYNGVKSVTEV 162 (311)
T ss_dssp HHHHHHHSSCCEEEECCCCCSCEECHHHHHHHHHHHCSSTTHHHHHTTSHHHHTTEECCHHHHHHHHHHHTHHHHHHHHH
T ss_pred HHHHHhCCCCCEEEECCcccccccccchhhhcccccccchhhcchhhcccchhcccccchhhhhhheeeeeehHHHHHHH
Confidence 23789999999975210 0111 12467787776555555
Q ss_pred HHhhc--CCCcEEEEEeCChhhHHH---------------------------HHHHH------CCCCCCC-cEEEeeccc
Q 019990 117 LEKHA--APNCKVLVVANPANTNAL---------------------------ILKEF------APSIPAK-NITCLTRLD 160 (332)
Q Consensus 117 i~~~~--~~~~~viv~snp~~~~~~---------------------------~~~~~------~~~~~~~-~i~~~t~l~ 160 (332)
+..+- ...++||++|+....... ....+ ..++++. ..|+.+|..
T Consensus 163 ~~~~l~~~~~~~IV~isS~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~SK~a 242 (311)
T 3o26_A 163 LIPLLQLSDSPRIVNVSSSTGSLKYVSNETALEILGDGDALTEERIDMVVNMLLKDFKENLIETNGWPSFGAAYTTSKAC 242 (311)
T ss_dssp HHHHHTTSSSCEEEEECCGGGSGGGCCCHHHHHHHHCGGGCCHHHHHHHHHHHHHHHHTTCTTTTTCCSSCHHHHHHHHH
T ss_pred hhHhhccCCCCeEEEEecCCcccccccchhhhhhhccccccchhHHHHHHHHHHhhhhccccccccCcccchhhHHHHHH
Confidence 54321 134577877764321110 00000 0122233 358888998
Q ss_pred HHHHHHHHHHHcC
Q 019990 161 HNRAMGQISERLK 173 (332)
Q Consensus 161 ~~r~~~~~a~~~~ 173 (332)
...+.+.+++.+.
T Consensus 243 ~~~~~~~la~e~~ 255 (311)
T 3o26_A 243 LNAYTRVLANKIP 255 (311)
T ss_dssp HHHHHHHHHHHCT
T ss_pred HHHHHHHHHhhcC
Confidence 8899889998874
|
| >2qq5_A DHRS1, dehydrogenase/reductase SDR family member 1; short-chain, structura genomics consortium, SGC, oxidoreductase; 1.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.30 E-value=5.4e-07 Score=79.55 Aligned_cols=155 Identities=13% Similarity=0.109 Sum_probs=88.1
Q ss_pred CCcEEEEEcCCChhHHHHHHHHHhcccCCCCCCeEEEEEecccchhhhhhhHhhhhhhc---cCCccceEEeCCHHHH--
Q 019990 4 NPLRVLVTGAAGQIGYALVPMIARGIMLGPDQPVILHMLDIEPAAEALNGVKMELIDAA---FPLLKGVVATTDVVEA-- 78 (332)
Q Consensus 4 ~~~kI~VtGaaG~IGs~l~~~L~~~~~~~~~~~~~i~l~D~~~~~~~~~~~~~dl~~~~---~~~~~~v~~~~~~~~a-- 78 (332)
+.++++||||+|+||.+++..|++.|. +|++.|++. +.+.....++.... .....|++...++.++
T Consensus 4 ~~k~vlVTGas~gIG~~ia~~l~~~G~-------~V~~~~r~~--~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~ 74 (260)
T 2qq5_A 4 NGQVCVVTGASRGIGRGIALQLCKAGA-------TVYITGRHL--DTLRVVAQEAQSLGGQCVPVVCDSSQESEVRSLFE 74 (260)
T ss_dssp TTCEEEESSTTSHHHHHHHHHHHHTTC-------EEEEEESCH--HHHHHHHHHHHHHSSEEEEEECCTTSHHHHHHHHH
T ss_pred CCCEEEEeCCCchHHHHHHHHHHHCCC-------EEEEEeCCH--HHHHHHHHHHHHcCCceEEEECCCCCHHHHHHHHH
Confidence 456899999999999999999999885 899999753 23332233332211 0112333333233222
Q ss_pred ------hCCCcEEEEecC--CC------CCC--CCCh---hHHHhhhHHHH----HHHHHHHHhhcCCCcEEEEEeCChh
Q 019990 79 ------CKDVNIAVMVGG--FP------RKE--GMER---KDVMSKNVSIY----KAQASALEKHAAPNCKVLVVANPAN 135 (332)
Q Consensus 79 ------~~~aDiVi~~ag--~~------~~~--~~~~---~~~~~~N~~~~----~~i~~~i~~~~~~~~~viv~snp~~ 135 (332)
+...|++|+.|| .. ..+ ..+. ...+..|+... +.+++.+.+.. .+++|++|+...
T Consensus 75 ~~~~~~~g~id~lvnnAg~g~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~--~g~iv~isS~~~ 152 (260)
T 2qq5_A 75 QVDREQQGRLDVLVNNAYAGVQTILNTRNKAFWETPASMWDDINNVGLRGHYFCSVYGARLMVPAG--QGLIVVISSPGS 152 (260)
T ss_dssp HHHHHHTTCCCEEEECCCTTHHHHHHTTTCCTTTSCTTHHHHHHTTTTHHHHHHHHHHHHHHGGGT--CCEEEEECCGGG
T ss_pred HHHHhcCCCceEEEECCccccccccccCCCccccCCHHHHHHHHhhcchhHHHHHHHHHHHHhhcC--CcEEEEEcChhh
Confidence 235699999994 21 111 1222 23455665554 33444444432 357787776432
Q ss_pred hHHHHHHHHCCCCCCCcEEEeecccHHHHHHHHHHHcCCCCCCeee
Q 019990 136 TNALILKEFAPSIPAKNITCLTRLDHNRAMGQISERLKVHVSDVKN 181 (332)
Q Consensus 136 ~~~~~~~~~~~~~~~~~i~~~t~l~~~r~~~~~a~~~~v~~~~v~~ 181 (332)
. . .++...|+.+|.....+.+.+++.++ +..|+.
T Consensus 153 ~---------~-~~~~~~Y~asK~a~~~~~~~la~e~~--~~gi~v 186 (260)
T 2qq5_A 153 L---------Q-YMFNVPYGVGKAACDKLAADCAHELR--RHGVSC 186 (260)
T ss_dssp T---------S-CCSSHHHHHHHHHHHHHHHHHHHHHG--GGTCEE
T ss_pred c---------C-CCCCCchHHHHHHHHHHHHHHHHHhc--cCCeEE
Confidence 1 1 12233567788877888888887654 334553
|
| >3gg2_A Sugar dehydrogenase, UDP-glucose/GDP-mannose dehydrogenase family; structural genomics, oxidoreductase, PSI-2; HET: UGA; 1.70A {Porphyromonas gingivalis} | Back alignment and structure |
|---|
Probab=98.28 E-value=1.3e-05 Score=76.55 Aligned_cols=110 Identities=16% Similarity=0.187 Sum_probs=70.8
Q ss_pred cEEEEEcCCChhHHHHHHHHHhcccCCCCCCeEEEEEecccchhhhhhhHhhhhhhccCC----------ccceEEeCCH
Q 019990 6 LRVLVTGAAGQIGYALVPMIARGIMLGPDQPVILHMLDIEPAAEALNGVKMELIDAAFPL----------LKGVVATTDV 75 (332)
Q Consensus 6 ~kI~VtGaaG~IGs~l~~~L~~~~~~~~~~~~~i~l~D~~~~~~~~~~~~~dl~~~~~~~----------~~~v~~~~~~ 75 (332)
|||+|+| +|.+|..++..|.+.|+ +|.++|++. +++............+. ..++..+++.
T Consensus 3 mkI~VIG-~G~vG~~lA~~La~~G~-------~V~~~D~~~--~~v~~l~~g~~~i~e~gl~~~l~~~~~~~~l~~t~d~ 72 (450)
T 3gg2_A 3 LDIAVVG-IGYVGLVSATCFAELGA-------NVRCIDTDR--NKIEQLNSGTIPIYEPGLEKMIARNVKAGRLRFGTEI 72 (450)
T ss_dssp CEEEEEC-CSHHHHHHHHHHHHTTC-------EEEEECSCH--HHHHHHHHTCSCCCSTTHHHHHHHHHHTTSEEEESCH
T ss_pred CEEEEEC-cCHHHHHHHHHHHhcCC-------EEEEEECCH--HHHHHHHcCCCcccCCCHHHHHHhhcccCcEEEECCH
Confidence 7999999 79999999999999886 899999864 23322111000000000 2356777888
Q ss_pred HHHhCCCcEEEEecCCCCCCCCChhHHHhhhHHHHHHHHHHHHhhcCCCcEEEEEe
Q 019990 76 VEACKDVNIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEKHAAPNCKVLVVA 131 (332)
Q Consensus 76 ~~a~~~aDiVi~~ag~~~~~~~~~~~~~~~N~~~~~~i~~~i~~~~~~~~~viv~s 131 (332)
.+++++||+||++.+.+..... ..+...++++++.+..+..++..++..|
T Consensus 73 ~ea~~~aDvViiaVptp~~~~~------~~dl~~v~~v~~~i~~~l~~g~iVV~~S 122 (450)
T 3gg2_A 73 EQAVPEADIIFIAVGTPAGEDG------SADMSYVLDAARSIGRAMSRYILIVTKS 122 (450)
T ss_dssp HHHGGGCSEEEECCCCCBCTTS------SBCCHHHHHHHHHHHHHCCSCEEEEECS
T ss_pred HHHHhcCCEEEEEcCCCcccCC------CcChHHHHHHHHHHHhhCCCCCEEEEee
Confidence 8889999999999876643221 2334556666777777654444444444
|
| >4g81_D Putative hexonate dehydrogenase; enzyme function initiative, EFI, structural genomics, dehydr oxidoreductase; 1.90A {Salmonella enterica subsp} | Back alignment and structure |
|---|
Probab=98.27 E-value=5e-06 Score=73.32 Aligned_cols=162 Identities=15% Similarity=0.155 Sum_probs=99.8
Q ss_pred CCcEEEEEcCCChhHHHHHHHHHhcccCCCCCCeEEEEEecccchhhhhhhHhhhhhhc---cCCccceEEeCCHHHH--
Q 019990 4 NPLRVLVTGAAGQIGYALVPMIARGIMLGPDQPVILHMLDIEPAAEALNGVKMELIDAA---FPLLKGVVATTDVVEA-- 78 (332)
Q Consensus 4 ~~~kI~VtGaaG~IGs~l~~~L~~~~~~~~~~~~~i~l~D~~~~~~~~~~~~~dl~~~~---~~~~~~v~~~~~~~~a-- 78 (332)
+.+.++||||++-||.+++..|++.|. +|++.|++. +.+.....++.... ..+..|++...+..+.
T Consensus 8 ~gKvalVTGas~GIG~aia~~la~~Ga-------~Vvi~~~~~--~~~~~~~~~l~~~g~~~~~~~~Dv~~~~~v~~~~~ 78 (255)
T 4g81_D 8 TGKTALVTGSARGLGFAYAEGLAAAGA-------RVILNDIRA--TLLAESVDTLTRKGYDAHGVAFDVTDELAIEAAFS 78 (255)
T ss_dssp TTCEEEETTCSSHHHHHHHHHHHHTTC-------EEEECCSCH--HHHHHHHHHHHHTTCCEEECCCCTTCHHHHHHHHH
T ss_pred CCCEEEEeCCCcHHHHHHHHHHHHCCC-------EEEEEECCH--HHHHHHHHHHHhcCCcEEEEEeeCCCHHHHHHHHH
Confidence 457899999999999999999999885 899999864 34444444444321 1123455444333322
Q ss_pred -----hCCCcEEEEecCCCCCC---CCChh---HHHhhhHHHH----HHHHHHHHhhcCCCcEEEEEeCChhhHHHHHHH
Q 019990 79 -----CKDVNIAVMVGGFPRKE---GMERK---DVMSKNVSIY----KAQASALEKHAAPNCKVLVVANPANTNALILKE 143 (332)
Q Consensus 79 -----~~~aDiVi~~ag~~~~~---~~~~~---~~~~~N~~~~----~~i~~~i~~~~~~~~~viv~snp~~~~~~~~~~ 143 (332)
+-..|++|+.||..... ..+.+ ..++.|+... +..++.+.+.. ..+.+|++|+-...
T Consensus 79 ~~~~~~G~iDiLVNNAG~~~~~~~~~~~~e~~~~~~~vNl~g~~~~~~~~~p~m~~~~-~~G~IVnisS~~~~------- 150 (255)
T 4g81_D 79 KLDAEGIHVDILINNAGIQYRKPMVELELENWQKVIDTNLTSAFLVSRSAAKRMIARN-SGGKIINIGSLTSQ------- 150 (255)
T ss_dssp HHHHTTCCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHT-CCEEEEEECCGGGT-------
T ss_pred HHHHHCCCCcEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcc-CCCEEEEEeehhhc-------
Confidence 33689999999974322 12322 2456676555 44455554432 34678888763321
Q ss_pred HCCCCCCCcEEEeecccHHHHHHHHHHHcCCCCCCeeeeEEEec
Q 019990 144 FAPSIPAKNITCLTRLDHNRAMGQISERLKVHVSDVKNVIIWGN 187 (332)
Q Consensus 144 ~~~~~~~~~i~~~t~l~~~r~~~~~a~~~~v~~~~v~~~~V~G~ 187 (332)
.+.|..-.|+.+|-.-..+.+.+|..++ +..||. |.+-+
T Consensus 151 --~~~~~~~~Y~asKaal~~ltr~lA~ela--~~gIrV-N~V~P 189 (255)
T 4g81_D 151 --AARPTVAPYTAAKGGIKMLTCSMAAEWA--QFNIQT-NAIGP 189 (255)
T ss_dssp --SBCTTCHHHHHHHHHHHHHHHHHHHHHG--GGTEEE-EEEEE
T ss_pred --CCCCCchhHHHHHHHHHHHHHHHHHHhc--ccCeEE-EEEee
Confidence 1223333567777777778888888876 566774 44454
|
| >1jtv_A 17 beta-hydroxysteroid dehydrogenase type 1; steroid hormones, alternative binding mode, oxidoreductase; HET: TES; 1.54A {Homo sapiens} SCOP: c.2.1.2 PDB: 1dht_A* 1equ_A* 1bhs_A* 1i5r_A* 1qyv_A* 1qyw_A* 1qyx_A* 3dey_X* 3dhe_A* 3hb4_X* 3hb5_X* 3klp_X* 3km0_A* 1iol_A* 1fds_A* 1fdt_A* 3klm_X* 1fdw_A* 1fdu_A* 1fdv_A* ... | Back alignment and structure |
|---|
Probab=98.26 E-value=1.2e-06 Score=80.19 Aligned_cols=157 Identities=17% Similarity=0.161 Sum_probs=89.2
Q ss_pred CcEEEEEcCCChhHHHHHHHHHhcccCCCCCCeEEEEEecccc-hhhhhhhHhhhhh-----hcc-CCccceEEeCCHHH
Q 019990 5 PLRVLVTGAAGQIGYALVPMIARGIMLGPDQPVILHMLDIEPA-AEALNGVKMELID-----AAF-PLLKGVVATTDVVE 77 (332)
Q Consensus 5 ~~kI~VtGaaG~IGs~l~~~L~~~~~~~~~~~~~i~l~D~~~~-~~~~~~~~~dl~~-----~~~-~~~~~v~~~~~~~~ 77 (332)
.++|+||||+|+||.+++..|++.|. ++++++++.. .+.+......+.. ... ....|++...++.+
T Consensus 2 ~k~vlVTGas~GIG~ala~~L~~~G~-------~v~~v~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~d~~~v~~ 74 (327)
T 1jtv_A 2 RTVVLITGCSSGIGLHLAVRLASDPS-------QSFKVYATLRDLKTQGRLWEAARALACPPGSLETLQLDVRDSKSVAA 74 (327)
T ss_dssp CEEEEESCCSSHHHHHHHHHHHTCTT-------CCEEEEEEESCGGGTHHHHHHHHHTTCCTTSEEEEECCTTCHHHHHH
T ss_pred CCEEEEECCCCHHHHHHHHHHHHCCC-------ceEEEEeecCcHHHHHHHHHHhhhccCCCCceEEEEecCCCHHHHHH
Confidence 45799999999999999999999875 4555554321 1111111111110 000 11234444344444
Q ss_pred HhC-----CCcEEEEecCCCCCC---CCCh---hHHHhhhHHHHHHHHHHH----HhhcCCCcEEEEEeCChhhHHHHHH
Q 019990 78 ACK-----DVNIAVMVGGFPRKE---GMER---KDVMSKNVSIYKAQASAL----EKHAAPNCKVLVVANPANTNALILK 142 (332)
Q Consensus 78 a~~-----~aDiVi~~ag~~~~~---~~~~---~~~~~~N~~~~~~i~~~i----~~~~~~~~~viv~snp~~~~~~~~~ 142 (332)
+++ ..|++|+.||..... ..+. ...+..|+.....+.+.+ ++.. ..++|++|+....
T Consensus 75 ~~~~~~~g~iD~lVnnAG~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~p~m~~~~--~g~IV~isS~~~~------ 146 (327)
T 1jtv_A 75 ARERVTEGRVDVLVCNAGLGLLGPLEALGEDAVASVLDVNVVGTVRMLQAFLPDMKRRG--SGRVLVTGSVGGL------ 146 (327)
T ss_dssp HHHTCTTSCCSEEEECCCCCCCSCGGGSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHT--CEEEEEEEEGGGT------
T ss_pred HHHHHhcCCCCEEEECCCcCCCCchhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcC--CCEEEEECCcccc------
Confidence 444 389999999874321 1122 235677877776666664 4332 4577777753221
Q ss_pred HHCCCCCCCcEEEeecccHHHHHHHHHHHcCCCCCCeee
Q 019990 143 EFAPSIPAKNITCLTRLDHNRAMGQISERLKVHVSDVKN 181 (332)
Q Consensus 143 ~~~~~~~~~~i~~~t~l~~~r~~~~~a~~~~v~~~~v~~ 181 (332)
.+.+....|+.+|.....+...++..+. +..|+.
T Consensus 147 ---~~~~~~~~Y~aSK~a~~~~~~~la~el~--~~gI~v 180 (327)
T 1jtv_A 147 ---MGLPFNDVYCASKFALEGLCESLAVLLL--PFGVHL 180 (327)
T ss_dssp ---SCCTTCHHHHHHHHHHHHHHHHHHHHHG--GGTEEE
T ss_pred ---cCCCCChHHHHHHHHHHHHHHHHHHHhh--hcCcEE
Confidence 1233334678888888888888887653 334553
|
| >3ic5_A Putative saccharopine dehydrogenase; structural genomics, APC63807.2, N-terminal domain, saccharo dehydrogenase, PSI-2; HET: MSE; 2.08A {Ruegeria pomeroyi} | Back alignment and structure |
|---|
Probab=98.24 E-value=1.3e-06 Score=66.85 Aligned_cols=101 Identities=14% Similarity=0.137 Sum_probs=62.1
Q ss_pred CCCcEEEEEcCCChhHHHHHHHHHhcccCCCCCCeEEEEEecccchhhhhhhHhhhhhhcc-CCccceEEeCCHHHHhCC
Q 019990 3 KNPLRVLVTGAAGQIGYALVPMIARGIMLGPDQPVILHMLDIEPAAEALNGVKMELIDAAF-PLLKGVVATTDVVEACKD 81 (332)
Q Consensus 3 ~~~~kI~VtGaaG~IGs~l~~~L~~~~~~~~~~~~~i~l~D~~~~~~~~~~~~~dl~~~~~-~~~~~v~~~~~~~~a~~~ 81 (332)
.++++|+|+|| |++|++++..|...+. .++.++|++. +++.. +..... ....++....++.+.+++
T Consensus 3 ~~~~~v~I~G~-G~iG~~~~~~l~~~g~------~~v~~~~r~~--~~~~~----~~~~~~~~~~~d~~~~~~~~~~~~~ 69 (118)
T 3ic5_A 3 AMRWNICVVGA-GKIGQMIAALLKTSSN------YSVTVADHDL--AALAV----LNRMGVATKQVDAKDEAGLAKALGG 69 (118)
T ss_dssp TTCEEEEEECC-SHHHHHHHHHHHHCSS------EEEEEEESCH--HHHHH----HHTTTCEEEECCTTCHHHHHHHTTT
T ss_pred CCcCeEEEECC-CHHHHHHHHHHHhCCC------ceEEEEeCCH--HHHHH----HHhCCCcEEEecCCCHHHHHHHHcC
Confidence 45679999997 9999999999998772 2899999853 22221 111110 011233333456667889
Q ss_pred CcEEEEecCCCCCCCCChhHHHhhhHHHHHHHHHHHHhhcCCCcEEEEEeCChh
Q 019990 82 VNIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEKHAAPNCKVLVVANPAN 135 (332)
Q Consensus 82 aDiVi~~ag~~~~~~~~~~~~~~~N~~~~~~i~~~i~~~~~~~~~viv~snp~~ 135 (332)
+|+||++++.. . ...+.+.+.+.+ ..++.++....
T Consensus 70 ~d~vi~~~~~~---------~-------~~~~~~~~~~~g---~~~~~~~~~~~ 104 (118)
T 3ic5_A 70 FDAVISAAPFF---------L-------TPIIAKAAKAAG---AHYFDLTEDVA 104 (118)
T ss_dssp CSEEEECSCGG---------G-------HHHHHHHHHHTT---CEEECCCSCHH
T ss_pred CCEEEECCCch---------h-------hHHHHHHHHHhC---CCEEEecCcHH
Confidence 99999987421 0 135566666653 45555665544
|
| >3ado_A Lambda-crystallin; L-gulonate 3-dehydrogenase, structural genomics, riken struc genomics/proteomics initiative, RSGI, acetylation; 1.70A {Oryctolagus cuniculus} PDB: 3adp_A* 3f3s_A* | Back alignment and structure |
|---|
Probab=98.24 E-value=5.4e-06 Score=75.35 Aligned_cols=110 Identities=20% Similarity=0.295 Sum_probs=72.4
Q ss_pred CCCC-CcEEEEEcCCChhHHHHHHHHHhcccCCCCCCeEEEEEecccchhhhhhhHh----hhhhh----cc--C-----
Q 019990 1 MAKN-PLRVLVTGAAGQIGYALVPMIARGIMLGPDQPVILHMLDIEPAAEALNGVKM----ELIDA----AF--P----- 64 (332)
Q Consensus 1 m~~~-~~kI~VtGaaG~IGs~l~~~L~~~~~~~~~~~~~i~l~D~~~~~~~~~~~~~----dl~~~----~~--~----- 64 (332)
|+.+ ..||+|+| +|-+|+.+|..++..|+ +|+++|.+. +.+..... .+... .. .
T Consensus 1 Ma~p~~~~VaViG-aG~MG~giA~~~a~~G~-------~V~l~D~~~--~~l~~~~~~i~~~l~~~~~~g~~~~~~~~~~ 70 (319)
T 3ado_A 1 MASPAAGDVLIVG-SGLVGRSWAMLFASGGF-------RVKLYDIEP--RQITGALENIRKEMKSLQQSGSLKGSLSAEE 70 (319)
T ss_dssp ------CEEEEEC-CSHHHHHHHHHHHHTTC-------CEEEECSCH--HHHHHHHHHHHHHHHHHHHTTCCCSSSCHHH
T ss_pred CCCCCCCeEEEEC-CcHHHHHHHHHHHhCCC-------eEEEEECCH--HHHHHHHHHHHHHHHHHHHcCCCCCccCHHH
Confidence 5544 46899999 69999999999999887 899999864 22221111 11110 00 0
Q ss_pred CccceEEeCCHHHHhCCCcEEEEecCCCCCCCCChhHHHhhhHHHHHHHHHHHHhhcCCCcEEEEEeCChhh
Q 019990 65 LLKGVVATTDVVEACKDVNIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEKHAAPNCKVLVVANPANT 136 (332)
Q Consensus 65 ~~~~v~~~~~~~~a~~~aDiVi~~ag~~~~~~~~~~~~~~~N~~~~~~i~~~i~~~~~~~~~viv~snp~~~ 136 (332)
....++.++++.+++++||+||=+. -.|.++-+++...+.++++|++ |++||.+..
T Consensus 71 ~l~~i~~~~~l~~a~~~ad~ViEav--------------~E~l~iK~~lf~~l~~~~~~~a--IlaSNTSsl 126 (319)
T 3ado_A 71 QLSLISSCTNLAEAVEGVVHIQECV--------------PENLDLKRKIFAQLDSIVDDRV--VLSSSSSCL 126 (319)
T ss_dssp HHHTEEEECCHHHHTTTEEEEEECC--------------CSCHHHHHHHHHHHHTTCCSSS--EEEECCSSC
T ss_pred HHhhcccccchHhHhccCcEEeecc--------------ccHHHHHHHHHHHHHHHhhhcc--eeehhhhhc
Confidence 1135777788889999999998542 1135666888999999986665 567775543
|
| >2fr1_A Erythromycin synthase, eryai; short chain dehydrogenase/reductase, oxidoreductase; HET: NDP; 1.79A {Saccharopolyspora erythraea} SCOP: c.2.1.2 c.2.1.2 PDB: 2fr0_A* | Back alignment and structure |
|---|
Probab=98.21 E-value=1.9e-06 Score=83.22 Aligned_cols=121 Identities=13% Similarity=0.067 Sum_probs=76.3
Q ss_pred CCcEEEEEcCCChhHHHHHHHHHhcccCCCCCCeEEEEEecccch-hhhhhhHhhhhhhc--c-CCccceEEeCCHHHHh
Q 019990 4 NPLRVLVTGAAGQIGYALVPMIARGIMLGPDQPVILHMLDIEPAA-EALNGVKMELIDAA--F-PLLKGVVATTDVVEAC 79 (332)
Q Consensus 4 ~~~kI~VtGaaG~IGs~l~~~L~~~~~~~~~~~~~i~l~D~~~~~-~~~~~~~~dl~~~~--~-~~~~~v~~~~~~~~a~ 79 (332)
+.++|+||||+|+||.+++..|++.+. ..|++++++... +.+.....++.... . ....|+....++.+.+
T Consensus 225 ~~~~vLITGgtGgIG~~la~~La~~G~------~~vvl~~R~~~~~~~~~~l~~~l~~~g~~v~~~~~Dv~d~~~v~~~~ 298 (486)
T 2fr1_A 225 PTGTVLVTGGTGGVGGQIARWLARRGA------PHLLLVSRSGPDADGAGELVAELEALGARTTVAACDVTDRESVRELL 298 (486)
T ss_dssp CCSEEEEETTTSHHHHHHHHHHHHHTC------SEEEEEESSGGGSTTHHHHHHHHHHTTCEEEEEECCTTCHHHHHHHH
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHcCC------CEEEEEcCCCCCcHHHHHHHHHHHhcCCEEEEEEeCCCCHHHHHHHH
Confidence 357899999999999999999998775 158899886421 11222222332211 1 1123444444455555
Q ss_pred CCC------cEEEEecCCCCCC---CCCh---hHHHhhhHHHHHHHHHHHHhhcCCCcEEEEEeC
Q 019990 80 KDV------NIAVMVGGFPRKE---GMER---KDVMSKNVSIYKAQASALEKHAAPNCKVLVVAN 132 (332)
Q Consensus 80 ~~a------DiVi~~ag~~~~~---~~~~---~~~~~~N~~~~~~i~~~i~~~~~~~~~viv~sn 132 (332)
+.+ |+|||+||..... ..+. ...+..|+.....+.+.+.... ..+||++|+
T Consensus 299 ~~i~~~g~ld~VIh~AG~~~~~~l~~~~~~~~~~~~~~nv~g~~~L~~~~~~~~--~~~~V~~SS 361 (486)
T 2fr1_A 299 GGIGDDVPLSAVFHAAATLDDGTVDTLTGERIERASRAKVLGARNLHELTRELD--LTAFVLFSS 361 (486)
T ss_dssp HTSCTTSCEEEEEECCCCCCCCCGGGCCHHHHHHHTHHHHHHHHHHHHHHTTSC--CSEEEEEEE
T ss_pred HHHHhcCCCcEEEECCccCCCCccccCCHHHHHHHHHHHHHHHHHHHHHhCcCC--CCEEEEEcC
Confidence 554 9999999975421 1222 2356779999999998887753 346677775
|
| >2o3j_A UDP-glucose 6-dehydrogenase; structural genomics, PSI-2, prote structure initiative, NEW YORK SGX research center for STRU genomics; 1.88A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=98.18 E-value=1.8e-05 Score=76.21 Aligned_cols=117 Identities=16% Similarity=0.255 Sum_probs=71.9
Q ss_pred CCcEEEEEcCCChhHHHHHHHHHhc--ccCCCCCCeEEEEEecccchhhhhhhHhhhhhhccCC-------------ccc
Q 019990 4 NPLRVLVTGAAGQIGYALVPMIARG--IMLGPDQPVILHMLDIEPAAEALNGVKMELIDAAFPL-------------LKG 68 (332)
Q Consensus 4 ~~~kI~VtGaaG~IGs~l~~~L~~~--~~~~~~~~~~i~l~D~~~~~~~~~~~~~dl~~~~~~~-------------~~~ 68 (332)
++|||+|+| +|.+|..++..|.+. ++ +|+++|++. +++.. +.....+. ...
T Consensus 8 ~~mkI~VIG-~G~vG~~~A~~La~~g~g~-------~V~~~D~~~--~~v~~----l~~g~~~i~e~gl~~~~~~~~~~~ 73 (481)
T 2o3j_A 8 KVSKVVCVG-AGYVGGPTCAMIAHKCPHI-------TVTVVDMNT--AKIAE----WNSDKLPIYEPGLDEIVFAARGRN 73 (481)
T ss_dssp CCCEEEEEC-CSTTHHHHHHHHHHHCTTS-------EEEEECSCH--HHHHH----HTSSSCSSCCTTHHHHHHHHBTTT
T ss_pred CCCEEEEEC-CCHHHHHHHHHHHhcCCCC-------EEEEEECCH--HHHHH----HHCCCCCcCCCCHHHHHHHhhcCC
Confidence 457999999 799999999999886 44 899999864 23322 11110000 124
Q ss_pred eEEeCCHHHHhCCCcEEEEecCCCCCCCCChhHHHhhhHHHHHHHHHHHHhhcCCCcEEEEE-eCChh
Q 019990 69 VVATTDVVEACKDVNIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEKHAAPNCKVLVV-ANPAN 135 (332)
Q Consensus 69 v~~~~~~~~a~~~aDiVi~~ag~~~~~~~~~~~~~~~N~~~~~~i~~~i~~~~~~~~~viv~-snp~~ 135 (332)
+..+++..+++++||+||++.+.|.....++.+ ...++..+.+.++.+.++..++..++.. |+|+.
T Consensus 74 l~~t~~~~~~~~~aDvvii~Vptp~~~~g~~~~-~~~dl~~v~~~~~~i~~~l~~g~iVV~~STv~~g 140 (481)
T 2o3j_A 74 LFFSSDIPKAIAEADLIFISVNTPTKMYGRGKG-MAPDLKYVESVSRTIAQYAGGPKIVVEKSTVPVK 140 (481)
T ss_dssp EEEESCHHHHHHHCSEEEECCCCCBCCSSTTTT-TSBCCHHHHHHHHHHHHHCCSCEEEEECSCCCTT
T ss_pred EEEECCHHHHhhcCCEEEEecCCcccccccccc-CCCcHHHHHHHHHHHHHhCCCCCEEEECCCCCCC
Confidence 666777778889999999998766533211111 1223444566667777665444443332 45654
|
| >4hp8_A 2-deoxy-D-gluconate 3-dehydrogenase; enzyme function initiative, EFI, structural genomics, oxidor; HET: NAP; 1.35A {Agrobacterium tumefaciens} | Back alignment and structure |
|---|
Probab=98.18 E-value=1.1e-05 Score=70.61 Aligned_cols=159 Identities=16% Similarity=0.086 Sum_probs=95.1
Q ss_pred CcEEEEEcCCChhHHHHHHHHHhcccCCCCCCeEEEEEecccchhhhhhhHhhhhhhc---cCCccceEEeCCHHHHh--
Q 019990 5 PLRVLVTGAAGQIGYALVPMIARGIMLGPDQPVILHMLDIEPAAEALNGVKMELIDAA---FPLLKGVVATTDVVEAC-- 79 (332)
Q Consensus 5 ~~kI~VtGaaG~IGs~l~~~L~~~~~~~~~~~~~i~l~D~~~~~~~~~~~~~dl~~~~---~~~~~~v~~~~~~~~a~-- 79 (332)
.+.++||||++-||.+++..|++.|. +|++.|++..++.. ..+.... .....|++...+..+.+
T Consensus 9 GKvalVTGas~GIG~aiA~~la~~Ga-------~Vvi~~r~~~~~~~----~~~~~~g~~~~~~~~Dv~d~~~v~~~~~~ 77 (247)
T 4hp8_A 9 GRKALVTGANTGLGQAIAVGLAAAGA-------EVVCAARRAPDETL----DIIAKDGGNASALLIDFADPLAAKDSFTD 77 (247)
T ss_dssp TCEEEETTTTSHHHHHHHHHHHHTTC-------EEEEEESSCCHHHH----HHHHHTTCCEEEEECCTTSTTTTTTSSTT
T ss_pred CCEEEEeCcCCHHHHHHHHHHHHcCC-------EEEEEeCCcHHHHH----HHHHHhCCcEEEEEccCCCHHHHHHHHHh
Confidence 57889999999999999999999885 89999986432111 1222111 11123444333333333
Q ss_pred CCCcEEEEecCCCCCC---CCChh---HHHhhhHHHHH----HHHHHHHhhcCCCcEEEEEeCChhhHHHHHHHHCCCCC
Q 019990 80 KDVNIAVMVGGFPRKE---GMERK---DVMSKNVSIYK----AQASALEKHAAPNCKVLVVANPANTNALILKEFAPSIP 149 (332)
Q Consensus 80 ~~aDiVi~~ag~~~~~---~~~~~---~~~~~N~~~~~----~i~~~i~~~~~~~~~viv~snp~~~~~~~~~~~~~~~~ 149 (332)
-..|++|+.||..... +.+.+ ..+..|+...- ..++.+.+.+ ..+.+|++|+-... .+.+
T Consensus 78 g~iDiLVNNAGi~~~~~~~~~~~~~w~~~~~vNl~g~f~~~~~~~~~m~~~g-~~G~IVnisS~~~~---------~g~~ 147 (247)
T 4hp8_A 78 AGFDILVNNAGIIRRADSVEFSELDWDEVMDVNLKALFFTTQAFAKELLAKG-RSGKVVNIASLLSF---------QGGI 147 (247)
T ss_dssp TCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHT-CCEEEEEECCGGGT---------SCCS
T ss_pred CCCCEEEECCCCCCCCCcccccHHHHHHHHHHHhHHHHHHHHHHHHHHHHhC-CCcEEEEEechhhC---------CCCC
Confidence 2579999999975322 12332 24667876654 4444454443 35678888863221 1223
Q ss_pred CCcEEEeecccHHHHHHHHHHHcCCCCCCeeeeEEEec
Q 019990 150 AKNITCLTRLDHNRAMGQISERLKVHVSDVKNVIIWGN 187 (332)
Q Consensus 150 ~~~i~~~t~l~~~r~~~~~a~~~~v~~~~v~~~~V~G~ 187 (332)
..-.|+.+|-.-..+.+.+|..++ +..||. |.+-+
T Consensus 148 ~~~~Y~asKaav~~ltr~lA~Ela--~~gIrV-NaV~P 182 (247)
T 4hp8_A 148 RVPSYTAAKHGVAGLTKLLANEWA--AKGINV-NAIAP 182 (247)
T ss_dssp SCHHHHHHHHHHHHHHHHHHHHHG--GGTEEE-EEEEE
T ss_pred CChHHHHHHHHHHHHHHHHHHHHh--hcCeEE-EEEee
Confidence 233566777777777888888876 566773 54444
|
| >3k96_A Glycerol-3-phosphate dehydrogenase [NAD(P)+]; GPSA, IDP01976, oxidoreductase, phospholipid biosynthesis; HET: EPE; 2.10A {Coxiella burnetii} | Back alignment and structure |
|---|
Probab=98.15 E-value=2.4e-05 Score=72.38 Aligned_cols=109 Identities=16% Similarity=0.229 Sum_probs=69.8
Q ss_pred CCCCCcEEEEEcCCChhHHHHHHHHHhcccCCCCCCeEEEEEecccchhhhhhhHhhhhhh----ccCCccceEEeCCHH
Q 019990 1 MAKNPLRVLVTGAAGQIGYALVPMIARGIMLGPDQPVILHMLDIEPAAEALNGVKMELIDA----AFPLLKGVVATTDVV 76 (332)
Q Consensus 1 m~~~~~kI~VtGaaG~IGs~l~~~L~~~~~~~~~~~~~i~l~D~~~~~~~~~~~~~dl~~~----~~~~~~~v~~~~~~~ 76 (332)
|+.++|||+|+| +|.+|++++..|.+.|+ +|.++|+++ +.++.....-... ...+..++..+.++.
T Consensus 25 m~~~~mkI~VIG-aG~mG~alA~~La~~G~-------~V~l~~r~~--~~~~~i~~~~~~~~~l~g~~l~~~i~~t~d~~ 94 (356)
T 3k96_A 25 MEPFKHPIAILG-AGSWGTALALVLARKGQ-------KVRLWSYES--DHVDEMQAEGVNNRYLPNYPFPETLKAYCDLK 94 (356)
T ss_dssp --CCCSCEEEEC-CSHHHHHHHHHHHTTTC-------CEEEECSCH--HHHHHHHHHSSBTTTBTTCCCCTTEEEESCHH
T ss_pred ccccCCeEEEEC-ccHHHHHHHHHHHHCCC-------eEEEEeCCH--HHHHHHHHcCCCcccCCCCccCCCeEEECCHH
Confidence 445568999999 69999999999998875 799999853 2222111110000 011223567778888
Q ss_pred HHhCCCcEEEEecCCCCCCCCChhHHHhhhHHHHHHHHHHHHhhcCCCcEEEEEeCChh
Q 019990 77 EACKDVNIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEKHAAPNCKVLVVANPAN 135 (332)
Q Consensus 77 ~a~~~aDiVi~~ag~~~~~~~~~~~~~~~N~~~~~~i~~~i~~~~~~~~~viv~snp~~ 135 (332)
++++++|+||++. | . ..++++++.+..+..++..++.++|.+.
T Consensus 95 ea~~~aDvVilaV--p------~--------~~~~~vl~~i~~~l~~~~ivvs~~kGi~ 137 (356)
T 3k96_A 95 ASLEGVTDILIVV--P------S--------FAFHEVITRMKPLIDAKTRIAWGTKGLA 137 (356)
T ss_dssp HHHTTCCEEEECC--C------H--------HHHHHHHHHHGGGCCTTCEEEECCCSCB
T ss_pred HHHhcCCEEEECC--C------H--------HHHHHHHHHHHHhcCCCCEEEEEeCCCC
Confidence 8999999999863 1 1 1345667777776545666666666443
|
| >1f0y_A HCDH, L-3-hydroxyacyl-COA dehydrogenase; abortive ternary complex, oxidoreductase; HET: CAA NAD; 1.80A {Homo sapiens} SCOP: a.100.1.3 c.2.1.6 PDB: 3rqs_A 1lsj_A* 1il0_A* 1lso_A* 1m76_A* 1m75_A* 1f14_A 1f12_A 1f17_A* 3had_A* 2hdh_A* 3hdh_A* | Back alignment and structure |
|---|
Probab=98.14 E-value=1.2e-05 Score=72.50 Aligned_cols=79 Identities=16% Similarity=0.147 Sum_probs=52.6
Q ss_pred CCCCCcEEEEEcCCChhHHHHHHHHHhcccCCCCCCeEEEEEecccchhhhhhhHhhhh----hh--ccC----------
Q 019990 1 MAKNPLRVLVTGAAGQIGYALVPMIARGIMLGPDQPVILHMLDIEPAAEALNGVKMELI----DA--AFP---------- 64 (332)
Q Consensus 1 m~~~~~kI~VtGaaG~IGs~l~~~L~~~~~~~~~~~~~i~l~D~~~~~~~~~~~~~dl~----~~--~~~---------- 64 (332)
|..+++||+|+| +|.+|+.++..|+..|+ +|+++|++. +.+......+. .. ...
T Consensus 11 ~~~~~~~I~VIG-~G~mG~~iA~~la~~G~-------~V~~~d~~~--~~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~ 80 (302)
T 1f0y_A 11 KKIIVKHVTVIG-GGLMGAGIAQVAAATGH-------TVVLVDQTE--DILAKSKKGIEESLRKVAKKKFAENPKAGDEF 80 (302)
T ss_dssp -CCCCCEEEEEC-CSHHHHHHHHHHHHTTC-------EEEEECSCH--HHHHHHHHHHHHHHHHHHHTTSSSCHHHHHHH
T ss_pred ccccCCEEEEEC-CCHHHHHHHHHHHhCCC-------eEEEEECCH--HHHHHHHHHHHHHHHHHHHcCCCCccccchhh
Confidence 555678999999 69999999999998876 899999864 22321111000 00 000
Q ss_pred ---CccceEEeCCHHHHhCCCcEEEEec
Q 019990 65 ---LLKGVVATTDVVEACKDVNIAVMVG 89 (332)
Q Consensus 65 ---~~~~v~~~~~~~~a~~~aDiVi~~a 89 (332)
....+...+++.+++++||+||.+.
T Consensus 81 ~~~~~~~i~~~~~~~~~~~~aD~Vi~av 108 (302)
T 1f0y_A 81 VEKTLSTIATSTDAASVVHSTDLVVEAI 108 (302)
T ss_dssp HHHHHHTEEEESCHHHHTTSCSEEEECC
T ss_pred HHHHHhceEEecCHHHhhcCCCEEEEcC
Confidence 0124666678777899999999874
|
| >4fs3_A Enoyl-[acyl-carrier-protein] reductase [NADPH] FA; rossmann fold, short chain dehydrogenase, NADPH binding, oxidoreductase; HET: 0WD 0WE; 1.80A {Staphylococcus aureus subsp} PDB: 3gr6_A* 3gns_A* 4all_A* 3gnt_A 4alk_A* 4alj_A* 4ali_A* 4alm_A 4aln_A | Back alignment and structure |
|---|
Probab=98.13 E-value=3.1e-05 Score=68.13 Aligned_cols=166 Identities=8% Similarity=0.050 Sum_probs=96.9
Q ss_pred CCCCCcEEEEEcCCC--hhHHHHHHHHHhcccCCCCCCeEEEEEecccchhhhhhhHhhhhhhcc----CCccceEEeCC
Q 019990 1 MAKNPLRVLVTGAAG--QIGYALVPMIARGIMLGPDQPVILHMLDIEPAAEALNGVKMELIDAAF----PLLKGVVATTD 74 (332)
Q Consensus 1 m~~~~~kI~VtGaaG--~IGs~l~~~L~~~~~~~~~~~~~i~l~D~~~~~~~~~~~~~dl~~~~~----~~~~~v~~~~~ 74 (332)
|+-+.+.++||||+| -||.+++..|++.|. +|++.|++. +.++.....+..... .+..|++...+
T Consensus 2 ~~l~gK~alVTGaa~~~GIG~aiA~~la~~Ga-------~Vvi~~r~~--~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~ 72 (256)
T 4fs3_A 2 LNLENKTYVIMGIANKRSIAFGVAKVLDQLGA-------KLVFTYRKE--RSRKELEKLLEQLNQPEAHLYQIDVQSDEE 72 (256)
T ss_dssp CCCTTCEEEEECCCSTTCHHHHHHHHHHHTTC-------EEEEEESSG--GGHHHHHHHHGGGTCSSCEEEECCTTCHHH
T ss_pred cCCCCCEEEEECCCCCchHHHHHHHHHHHCCC-------EEEEEECCH--HHHHHHHHHHHhcCCCcEEEEEccCCCHHH
Confidence 334678899999877 799999999999886 899999864 223322222322211 11234443333
Q ss_pred HHH-------HhCCCcEEEEecCCCCC-------CCCChhHH---HhhhHHHHHHHHHHHHhhcCCCcEEEEEeCChhhH
Q 019990 75 VVE-------ACKDVNIAVMVGGFPRK-------EGMERKDV---MSKNVSIYKAQASALEKHAAPNCKVLVVANPANTN 137 (332)
Q Consensus 75 ~~~-------a~~~aDiVi~~ag~~~~-------~~~~~~~~---~~~N~~~~~~i~~~i~~~~~~~~~viv~snp~~~~ 137 (332)
..+ .+-..|++|+.||.... ...+.+++ +..|......+...........+.+|++|+-...
T Consensus 73 v~~~~~~~~~~~G~iD~lvnnAg~~~~~~~~~~~~~~~~~~~~~~~~vn~~~~~~~~~~~~~~~~~~G~IVnisS~~~~- 151 (256)
T 4fs3_A 73 VINGFEQIGKDVGNIDGVYHSIAFANMEDLRGRFSETSREGFLLAQDISSYSLTIVAHEAKKLMPEGGSIVATTYLGGE- 151 (256)
T ss_dssp HHHHHHHHHHHHCCCSEEEECCCCCCGGGGTSCGGGCCHHHHHHHHHHHTHHHHHHHHHHHTTCTTCEEEEEEECGGGT-
T ss_pred HHHHHHHHHHHhCCCCEEEeccccccccccccccccCCHHHHHHHHHHHHHHHHHHHHHHHHHhccCCEEEEEeccccc-
Confidence 222 24478999999986321 11223332 2345554445555555544345677877753221
Q ss_pred HHHHHHHCCCCCCCcEEEeecccHHHHHHHHHHHcCCCCCCeeeeEEEec
Q 019990 138 ALILKEFAPSIPAKNITCLTRLDHNRAMGQISERLKVHVSDVKNVIIWGN 187 (332)
Q Consensus 138 ~~~~~~~~~~~~~~~i~~~t~l~~~r~~~~~a~~~~v~~~~v~~~~V~G~ 187 (332)
.+.+....|+.+|-.-..+.+.+|..++ +..||. +.+-+
T Consensus 152 --------~~~~~~~~Y~asKaal~~ltr~lA~Ela--~~gIrV-N~V~P 190 (256)
T 4fs3_A 152 --------FAVQNYNVMGVAKASLEANVKYLALDLG--PDNIRV-NAISA 190 (256)
T ss_dssp --------SCCTTTHHHHHHHHHHHHHHHHHHHHHG--GGTEEE-EEEEE
T ss_pred --------cCcccchhhHHHHHHHHHHHHHHHHHhC--ccCeEE-EEEec
Confidence 1233333567777777788888888865 567774 44444
|
| >3g79_A NDP-N-acetyl-D-galactosaminuronic acid dehydrogen; structural genomics, protein structure initiative; 2.40A {Methanosarcina mazei GO1} | Back alignment and structure |
|---|
Probab=98.12 E-value=2.3e-05 Score=75.08 Aligned_cols=114 Identities=13% Similarity=0.098 Sum_probs=69.7
Q ss_pred CCcEEEEEcCCChhHHHHHHHHHhc-ccCCCCCCeEEEEEecccchhhhhhhHhhhhhhccCC----------------c
Q 019990 4 NPLRVLVTGAAGQIGYALVPMIARG-IMLGPDQPVILHMLDIEPAAEALNGVKMELIDAAFPL----------------L 66 (332)
Q Consensus 4 ~~~kI~VtGaaG~IGs~l~~~L~~~-~~~~~~~~~~i~l~D~~~~~~~~~~~~~dl~~~~~~~----------------~ 66 (332)
++|||+|+| +|.+|..++..|+.. |+. +|+++|++.. +..+.+..+.....+. .
T Consensus 17 ~~mkIaVIG-lG~mG~~lA~~la~~~G~~------~V~~~D~~~~--~~~~kv~~l~~g~~~i~~~e~gl~~l~~~~~~~ 87 (478)
T 3g79_A 17 PIKKIGVLG-MGYVGIPAAVLFADAPCFE------KVLGFQRNSK--SSGYKIEMLNRGESPLKGEEPGLEELIGKVVKA 87 (478)
T ss_dssp SCCEEEEEC-CSTTHHHHHHHHHHSTTCC------EEEEECCCCT--TTTTHHHHHTTTCCCSSCCGGGHHHHHHHHHHT
T ss_pred CCCEEEEEC-cCHHHHHHHHHHHHhCCCC------eEEEEECChh--HhHHHHHHHHhcCCCccccCCCHHHHHHhhccc
Confidence 468999999 799999999999988 631 7999998752 1111222232211111 2
Q ss_pred cceEEeCCHHHHhCCCcEEEEecCCCCCCCCChhHHHhhhHHHHHHHHHHHHhhcCCCcEEEEEe
Q 019990 67 KGVVATTDVVEACKDVNIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEKHAAPNCKVLVVA 131 (332)
Q Consensus 67 ~~v~~~~~~~~a~~~aDiVi~~ag~~~~~~~~~~~~~~~N~~~~~~i~~~i~~~~~~~~~viv~s 131 (332)
..+..+++ .+++++||+||++.+.+...... ...++..+....+.+..+..++..+|..|
T Consensus 88 g~l~~ttd-~ea~~~aDvViiaVptp~~~~~~----~~~dl~~v~~~~~~i~~~l~~g~iVV~~S 147 (478)
T 3g79_A 88 GKFECTPD-FSRISELDAVTLAIQTPFANPKD----LEPDFSALIDGIRNVGKYLKPGMLVVLES 147 (478)
T ss_dssp TCEEEESC-GGGGGGCSEEEECCCCCCCSSCC----SSCCCHHHHHHHHHHHHHCCTTCEEEECS
T ss_pred CCeEEeCc-HHHHhcCCEEEEecCCchhccCC----ccccHHHHHHHHHHHHhhcCCCcEEEEeC
Confidence 45777777 67899999999998766432211 01223444555566666544444444433
|
| >3oml_A GH14720P, peroxisomal multifunctional enzyme type 2, CG3415; rossmann fold, hot-DOG fold, hydratase 2 motif, peroxisomes, oxidoreductase; 2.15A {Drosophila melanogaster} | Back alignment and structure |
|---|
Probab=98.12 E-value=6.3e-06 Score=81.82 Aligned_cols=152 Identities=13% Similarity=0.070 Sum_probs=84.5
Q ss_pred CCcEEEEEcCCChhHHHHHHHHHhcccCCCCCCeEEEEEeccc-------chhhhhhhHhhhhhhccCCccceEEeCCHH
Q 019990 4 NPLRVLVTGAAGQIGYALVPMIARGIMLGPDQPVILHMLDIEP-------AAEALNGVKMELIDAAFPLLKGVVATTDVV 76 (332)
Q Consensus 4 ~~~kI~VtGaaG~IGs~l~~~L~~~~~~~~~~~~~i~l~D~~~-------~~~~~~~~~~dl~~~~~~~~~~v~~~~~~~ 76 (332)
+.+.++||||+|.||.+++..|++.|. +|++.|+.. +.+.+.....++.........++....+..
T Consensus 18 ~gk~~lVTGas~GIG~aiA~~La~~Ga-------~Vv~~~r~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~D~~d~~~~~ 90 (613)
T 3oml_A 18 DGRVAVVTGAGAGLGREYALLFAERGA-------KVVVNDLGGTHSGDGASQRAADIVVDEIRKAGGEAVADYNSVIDGA 90 (613)
T ss_dssp TTCEEEETTTTSHHHHHHHHHHHHTTC-------EEEEC--------------CHHHHHHHHHHTTCCEEECCCCGGGHH
T ss_pred CCCEEEEeCCCcHHHHHHHHHHHHCCC-------EEEEEeCCcccccccCCHHHHHHHHHHHHHhCCeEEEEeCCHHHHH
Confidence 457899999999999999999999885 889988621 112233333333322111112333333333
Q ss_pred HHhC-------CCcEEEEecCCCCCC---CCChh---HHHhhhHHHHHHHHHHH----HhhcCCCcEEEEEeCChhhHHH
Q 019990 77 EACK-------DVNIAVMVGGFPRKE---GMERK---DVMSKNVSIYKAQASAL----EKHAAPNCKVLVVANPANTNAL 139 (332)
Q Consensus 77 ~a~~-------~aDiVi~~ag~~~~~---~~~~~---~~~~~N~~~~~~i~~~i----~~~~~~~~~viv~snp~~~~~~ 139 (332)
+.++ ..|++|+.||..... ..+.+ ..+..|+.....+.+++ ++. ..++||++|+....
T Consensus 91 ~~~~~~~~~~g~iDiLVnnAGi~~~~~~~~~~~~~~~~~~~vNl~g~~~l~~~~~p~m~~~--~~g~IV~isS~a~~--- 165 (613)
T 3oml_A 91 KVIETAIKAFGRVDILVNNAGILRDRSLVKTSEQDWNLVNDVHLKGSFKCTQAAFPYMKKQ--NYGRIIMTSSNSGI--- 165 (613)
T ss_dssp HHHC----------CEECCCCCCCCCCSTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHTT--TCEEEEEECCHHHH---
T ss_pred HHHHHHHHHCCCCcEEEECCCCCCCCCcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHc--CCCEEEEECCHHHc---
Confidence 3333 579999999975321 22322 35677877766666555 433 24677877763321
Q ss_pred HHHHHCCCCCCCcEEEeecccHHHHHHHHHHHcC
Q 019990 140 ILKEFAPSIPAKNITCLTRLDHNRAMGQISERLK 173 (332)
Q Consensus 140 ~~~~~~~~~~~~~i~~~t~l~~~r~~~~~a~~~~ 173 (332)
. +.+....|+.+|.....+.+.+|..+.
T Consensus 166 ----~--~~~~~~~Y~asKaal~~lt~~la~e~~ 193 (613)
T 3oml_A 166 ----Y--GNFGQVNYTAAKMGLIGLANTVAIEGA 193 (613)
T ss_dssp ----H--CCTTCHHHHHHHHHHHHHHHHHHHHHG
T ss_pred ----C--CCCCChHHHHHHHHHHHHHHHHHHHhC
Confidence 1 223333567777777777777777753
|
| >4gkb_A 3-oxoacyl-[acyl-carrier protein] reductase; putative sugar dehydrogenase, enzyme function initiative, EF structural genomics; 1.50A {Burkholderia multivorans} PDB: 4glo_A* | Back alignment and structure |
|---|
Probab=98.09 E-value=9.7e-06 Score=71.62 Aligned_cols=159 Identities=13% Similarity=0.063 Sum_probs=94.6
Q ss_pred CCcEEEEEcCCChhHHHHHHHHHhcccCCCCCCeEEEEEecccchhhhhhhHhhhhhhc---cCCccceEEeCCHHH---
Q 019990 4 NPLRVLVTGAAGQIGYALVPMIARGIMLGPDQPVILHMLDIEPAAEALNGVKMELIDAA---FPLLKGVVATTDVVE--- 77 (332)
Q Consensus 4 ~~~kI~VtGaaG~IGs~l~~~L~~~~~~~~~~~~~i~l~D~~~~~~~~~~~~~dl~~~~---~~~~~~v~~~~~~~~--- 77 (332)
+.+.++||||++-||.+++..|++.|. .+++.|++..+ .. ....+.... ..+..|++...+..+
T Consensus 6 ~gKvalVTGas~GIG~aia~~la~~Ga-------~Vv~~~r~~~~--~~-~~~~~~~~~~~~~~~~~Dv~~~~~v~~~v~ 75 (258)
T 4gkb_A 6 QDKVVIVTGGASGIGGAISMRLAEERA-------IPVVFARHAPD--GA-FLDALAQRQPRATYLPVELQDDAQCRDAVA 75 (258)
T ss_dssp TTCEEEEETTTSHHHHHHHHHHHHTTC-------EEEEEESSCCC--HH-HHHHHHHHCTTCEEEECCTTCHHHHHHHHH
T ss_pred CCCEEEEeCCCCHHHHHHHHHHHHcCC-------EEEEEECCccc--HH-HHHHHHhcCCCEEEEEeecCCHHHHHHHHH
Confidence 567899999999999999999999885 88999986532 11 111222111 112234443333222
Q ss_pred ----HhCCCcEEEEecCCCCCC--CCChhH---HHhhhHHHH----HHHHHHHHhhcCCCcEEEEEeCChhhHHHHHHHH
Q 019990 78 ----ACKDVNIAVMVGGFPRKE--GMERKD---VMSKNVSIY----KAQASALEKHAAPNCKVLVVANPANTNALILKEF 144 (332)
Q Consensus 78 ----a~~~aDiVi~~ag~~~~~--~~~~~~---~~~~N~~~~----~~i~~~i~~~~~~~~~viv~snp~~~~~~~~~~~ 144 (332)
.+-..|++|+.||..... +.+.++ .++.|+... +..++.+++. .+.+|++++-...
T Consensus 76 ~~~~~~G~iDiLVNnAGi~~~~~~~~~~e~~~~~~~vNl~g~~~~~~~~~p~m~~~---~G~IVnisS~~~~-------- 144 (258)
T 4gkb_A 76 QTIATFGRLDGLVNNAGVNDGIGLDAGRDAFVASLERNLIHYYAMAHYCVPHLKAT---RGAIVNISSKTAV-------- 144 (258)
T ss_dssp HHHHHHSCCCEEEECCCCCCCCCTTSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHH---TCEEEEECCTHHH--------
T ss_pred HHHHHhCCCCEEEECCCCCCCCCccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhc---CCeEEEEeehhhc--------
Confidence 244789999999974332 233333 355666554 4444444432 3577877763321
Q ss_pred CCCCCCCcEEEeecccHHHHHHHHHHHcCCCCCCeeeeEEEec
Q 019990 145 APSIPAKNITCLTRLDHNRAMGQISERLKVHVSDVKNVIIWGN 187 (332)
Q Consensus 145 ~~~~~~~~i~~~t~l~~~r~~~~~a~~~~v~~~~v~~~~V~G~ 187 (332)
.+.|....|+.+|-.-..+.+.+|..++ +..||. |.+-+
T Consensus 145 -~~~~~~~~Y~asKaav~~ltr~lA~ela--~~gIrV-N~V~P 183 (258)
T 4gkb_A 145 -TGQGNTSGYCASKGAQLALTREWAVALR--EHGVRV-NAVIP 183 (258)
T ss_dssp -HCCSSCHHHHHHHHHHHHHHHHHHHHHG--GGTCEE-EEEEE
T ss_pred -cCCCCchHHHHHHHHHHHHHHHHHHHhc--ccCeEE-EEEec
Confidence 1233334577777777788888888876 556763 44454
|
| >4e12_A Diketoreductase; oxidoreductase, NADH; HET: 1PE; 1.93A {Acinetobacter baylyi} PDB: 4dyd_A* 4e13_A* | Back alignment and structure |
|---|
Probab=98.09 E-value=1.6e-05 Score=71.09 Aligned_cols=100 Identities=19% Similarity=0.217 Sum_probs=62.9
Q ss_pred CCcEEEEEcCCChhHHHHHHHHHhcccCCCCCCeEEEEEecccchhhhhhhHhhhhhh---------cc------CCccc
Q 019990 4 NPLRVLVTGAAGQIGYALVPMIARGIMLGPDQPVILHMLDIEPAAEALNGVKMELIDA---------AF------PLLKG 68 (332)
Q Consensus 4 ~~~kI~VtGaaG~IGs~l~~~L~~~~~~~~~~~~~i~l~D~~~~~~~~~~~~~dl~~~---------~~------~~~~~ 68 (332)
+++||+|+| +|.+|+.++..|+..|+ +|+++|++. +.+......+... .. .....
T Consensus 3 ~~~kV~VIG-aG~mG~~iA~~la~~G~-------~V~l~d~~~--~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~~ 72 (283)
T 4e12_A 3 GITNVTVLG-TGVLGSQIAFQTAFHGF-------AVTAYDINT--DALDAAKKRFEGLAAVYEKEVAGAADGAAQKALGG 72 (283)
T ss_dssp SCCEEEEEC-CSHHHHHHHHHHHHTTC-------EEEEECSSH--HHHHHHHHHHHHHHHHHHHHSTTCTTTHHHHHHHH
T ss_pred CCCEEEEEC-CCHHHHHHHHHHHhCCC-------eEEEEeCCH--HHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHcC
Confidence 467999999 69999999999998886 899999864 2332221111100 00 00123
Q ss_pred eEEeCCHHHHhCCCcEEEEecCCCCCCCCChhHHHhhhHHHHHHHHHHHHhhcCCCcEE
Q 019990 69 VVATTDVVEACKDVNIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEKHAAPNCKV 127 (332)
Q Consensus 69 v~~~~~~~~a~~~aDiVi~~ag~~~~~~~~~~~~~~~N~~~~~~i~~~i~~~~~~~~~v 127 (332)
+....++.+++++||+||.+... +.+..+.+.+.+..+.+++..+
T Consensus 73 i~~~~~~~~~~~~aDlVi~av~~--------------~~~~~~~v~~~l~~~~~~~~il 117 (283)
T 4e12_A 73 IRYSDDLAQAVKDADLVIEAVPE--------------SLDLKRDIYTKLGELAPAKTIF 117 (283)
T ss_dssp CEEESCHHHHTTTCSEEEECCCS--------------CHHHHHHHHHHHHHHSCTTCEE
T ss_pred eEEeCCHHHHhccCCEEEEeccC--------------cHHHHHHHHHHHHhhCCCCcEE
Confidence 55667888889999999987421 1222344555566666455543
|
| >1d7o_A Enoyl-[acyl-carrier protein] reductase (NADH) PRE; triclosan, enoyl reductase, oxidoreductase; HET: NAD TCL; 1.90A {Brassica napus} SCOP: c.2.1.2 PDB: 1eno_A* 1enp_A* 1cwu_A* | Back alignment and structure |
|---|
Probab=98.09 E-value=4.2e-06 Score=75.29 Aligned_cols=154 Identities=17% Similarity=0.127 Sum_probs=87.5
Q ss_pred CCCCcEEEEEcCC--ChhHHHHHHHHHhcccCCCCCCeEEEEEecccc---------hhhhhhhHhhhhhh------c-c
Q 019990 2 AKNPLRVLVTGAA--GQIGYALVPMIARGIMLGPDQPVILHMLDIEPA---------AEALNGVKMELIDA------A-F 63 (332)
Q Consensus 2 ~~~~~kI~VtGaa--G~IGs~l~~~L~~~~~~~~~~~~~i~l~D~~~~---------~~~~~~~~~dl~~~------~-~ 63 (332)
+.+.++++||||+ |+||.+++..|++.|. +|++.|++.. .+.+... .++... . .
T Consensus 5 ~l~~k~~lVTGas~~~GIG~aia~~la~~G~-------~V~~~~r~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~ 76 (297)
T 1d7o_A 5 DLRGKRAFIAGIADDNGYGWAVAKSLAAAGA-------EILVGTWVPALNIFETSLRRGKFDQS-RVLPDGSLMEIKKVY 76 (297)
T ss_dssp CCTTCEEEEECCSSSSSHHHHHHHHHHHTTC-------EEEEEEEHHHHHHHHHHHHTTTTTGG-GBCTTSSBCCEEEEE
T ss_pred ccCCCEEEEECCCCCCChHHHHHHHHHHCCC-------eEEEeeccccchhhhhhhhhhHhhhh-hhhcccccccccccc
Confidence 3445789999998 9999999999999885 7888875310 0011110 111100 0 0
Q ss_pred CC------ccceEE------------eCCHHHH-------hCCCcEEEEecCCCC---CC--CCCh---hHHHhhhHHHH
Q 019990 64 PL------LKGVVA------------TTDVVEA-------CKDVNIAVMVGGFPR---KE--GMER---KDVMSKNVSIY 110 (332)
Q Consensus 64 ~~------~~~v~~------------~~~~~~a-------~~~aDiVi~~ag~~~---~~--~~~~---~~~~~~N~~~~ 110 (332)
.. ..++.. ..++.+. +...|++|+.||... .+ ..+. ...+..|+...
T Consensus 77 ~~~~~~~~~~dv~~Dv~~~~~~~~~~~~~v~~~~~~~~~~~g~iD~lvnnAg~~~~~~~~~~~~~~~~~~~~~~vN~~g~ 156 (297)
T 1d7o_A 77 PLDAVFDNPEDVPEDVKANKRYAGSSNWTVQEAAECVRQDFGSIDILVHSLANGPEVSKPLLETSRKGYLAAISASSYSF 156 (297)
T ss_dssp EECTTCCSGGGSCHHHHTSHHHHHCCCCSHHHHHHHHHHHHSCEEEEEECCCCCTTTTSCGGGCCHHHHHHHHHHHTHHH
T ss_pred ccceeccchhhhhhhhhccccccccCHHHHHHHHHHHHHHcCCCCEEEECCccCccCCCCcccCCHHHHHHHHHHhhhHH
Confidence 00 001111 1233332 236899999998632 11 1222 23567788888
Q ss_pred HHHHHHHHhhcCCCcEEEEEeCChhhHHHHHHHHCCCCCCC-cEEEeecccHHHHHHHHHHHc
Q 019990 111 KAQASALEKHAAPNCKVLVVANPANTNALILKEFAPSIPAK-NITCLTRLDHNRAMGQISERL 172 (332)
Q Consensus 111 ~~i~~~i~~~~~~~~~viv~snp~~~~~~~~~~~~~~~~~~-~i~~~t~l~~~r~~~~~a~~~ 172 (332)
..+.+++..+-...+++|++|+.... .+.+.. ..|+.+|.....+.+.++..+
T Consensus 157 ~~l~~~~~~~m~~~g~iv~isS~~~~---------~~~~~~~~~Y~asKaa~~~~~~~la~e~ 210 (297)
T 1d7o_A 157 VSLLSHFLPIMNPGGASISLTYIASE---------RIIPGYGGGMSSAKAALESDTRVLAFEA 210 (297)
T ss_dssp HHHHHHHGGGEEEEEEEEEEECGGGT---------SCCTTCTTTHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhccCceEEEEeccccc---------cCCCCcchHHHHHHHHHHHHHHHHHHHh
Confidence 88888887652123577777764321 123333 257778877777777777664
|
| >3u0b_A Oxidoreductase, short chain dehydrogenase/reducta protein; structural genomics, ssgcid; 1.70A {Mycobacterium smegmatis} PDB: 3lls_A 3v1t_C 3v1u_A* 4fw8_A* 3q6i_A* 3m1l_A | Back alignment and structure |
|---|
Probab=98.08 E-value=1.5e-05 Score=76.27 Aligned_cols=151 Identities=22% Similarity=0.215 Sum_probs=91.9
Q ss_pred CcEEEEEcCCChhHHHHHHHHHhcccCCCCCCeEEEEEecccchhhhhhhHhhhhhhccCCccceEEeCCHHHHhC----
Q 019990 5 PLRVLVTGAAGQIGYALVPMIARGIMLGPDQPVILHMLDIEPAAEALNGVKMELIDAAFPLLKGVVATTDVVEACK---- 80 (332)
Q Consensus 5 ~~kI~VtGaaG~IGs~l~~~L~~~~~~~~~~~~~i~l~D~~~~~~~~~~~~~dl~~~~~~~~~~v~~~~~~~~a~~---- 80 (332)
.+.++||||+|.||.+++..|++.|. +++++|++...+.+.....++. . .....|++...++.+.++
T Consensus 213 gk~~LVTGgsgGIG~aiA~~La~~Ga-------~Vvl~~r~~~~~~l~~~~~~~~-~-~~~~~Dvtd~~~v~~~~~~~~~ 283 (454)
T 3u0b_A 213 GKVAVVTGAARGIGATIAEVFARDGA-------TVVAIDVDGAAEDLKRVADKVG-G-TALTLDVTADDAVDKITAHVTE 283 (454)
T ss_dssp TCEEEESSCSSHHHHHHHHHHHHTTC-------EEEEEECGGGHHHHHHHHHHHT-C-EEEECCTTSTTHHHHHHHHHHH
T ss_pred CCEEEEeCCchHHHHHHHHHHHHCCC-------EEEEEeCCccHHHHHHHHHHcC-C-eEEEEecCCHHHHHHHHHHHHH
Confidence 46899999999999999999998875 7899987542222221111111 0 011234444333333322
Q ss_pred ---C-CcEEEEecCCCCCC---CCChh---HHHhhhHHHHHHHHHHHHhhcC--CCcEEEEEeCChhhHHHHHHHHCCCC
Q 019990 81 ---D-VNIAVMVGGFPRKE---GMERK---DVMSKNVSIYKAQASALEKHAA--PNCKVLVVANPANTNALILKEFAPSI 148 (332)
Q Consensus 81 ---~-aDiVi~~ag~~~~~---~~~~~---~~~~~N~~~~~~i~~~i~~~~~--~~~~viv~snp~~~~~~~~~~~~~~~ 148 (332)
+ .|+|||.||+.... ..+.+ ..+..|+.....+.+.+..... +..+||++|+-... .+.
T Consensus 284 ~~g~~id~lV~nAGv~~~~~~~~~~~~~~~~~~~~nv~g~~~l~~~~~~~~~~~~~g~iV~iSS~a~~---------~g~ 354 (454)
T 3u0b_A 284 HHGGKVDILVNNAGITRDKLLANMDEKRWDAVIAVNLLAPQRLTEGLVGNGTIGEGGRVIGLSSMAGI---------AGN 354 (454)
T ss_dssp HSTTCCSEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHTTSSCTTCEEEEECCHHHH---------HCC
T ss_pred HcCCCceEEEECCcccCCCccccCCHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCEEEEEeChHhC---------CCC
Confidence 3 89999999985432 12222 3567898888888888776521 24577777753221 122
Q ss_pred CCCcEEEeecccHHHHHHHHHHHcC
Q 019990 149 PAKNITCLTRLDHNRAMGQISERLK 173 (332)
Q Consensus 149 ~~~~i~~~t~l~~~r~~~~~a~~~~ 173 (332)
+....|+.+|.....+...++..+.
T Consensus 355 ~g~~~YaasKaal~~l~~~la~e~~ 379 (454)
T 3u0b_A 355 RGQTNYATTKAGMIGLAEALAPVLA 379 (454)
T ss_dssp TTCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHhh
Confidence 3333567777766777777777654
|
| >2z5l_A Tylkr1, tylactone synthase starter module and modules 1 & 2; short-chain dehydrogenase/reductase, rossman fold; 1.95A {Streptomyces fradiae} | Back alignment and structure |
|---|
Probab=98.07 E-value=6.2e-06 Score=80.04 Aligned_cols=122 Identities=14% Similarity=0.064 Sum_probs=74.9
Q ss_pred CCcEEEEEcCCChhHHHHHHHHHhcccCCCCCCeEEEEEecccch-hhhhhhHhhhhhhc--c-CCccceEEeCCHHHHh
Q 019990 4 NPLRVLVTGAAGQIGYALVPMIARGIMLGPDQPVILHMLDIEPAA-EALNGVKMELIDAA--F-PLLKGVVATTDVVEAC 79 (332)
Q Consensus 4 ~~~kI~VtGaaG~IGs~l~~~L~~~~~~~~~~~~~i~l~D~~~~~-~~~~~~~~dl~~~~--~-~~~~~v~~~~~~~~a~ 79 (332)
+.++|+||||+|+||.+++..|.+.|.. .|++++++... +.+.....++.... . ....|+....++.+.+
T Consensus 258 ~~~~vLITGgtGgIG~~lA~~La~~G~~------~vvl~~R~~~~~~~~~~l~~~l~~~g~~v~~~~~Dvtd~~~v~~~~ 331 (511)
T 2z5l_A 258 PSGTVLITGGMGAIGRRLARRLAAEGAE------RLVLTSRRGPEAPGAAELAEELRGHGCEVVHAACDVAERDALAALV 331 (511)
T ss_dssp CCSEEEEETTTSHHHHHHHHHHHHTTCS------EEEEEESSGGGSTTHHHHHHHHHTTTCEEEEEECCSSCHHHHHHHH
T ss_pred CCCEEEEECCCCHHHHHHHHHHHhCCCc------EEEEEecCCcccHHHHHHHHHHHhcCCEEEEEEeCCCCHHHHHHHH
Confidence 3578999999999999999999887751 58888876421 11222222332211 1 1123554444555556
Q ss_pred CC--CcEEEEecCCCCCC---CCCh---hHHHhhhHHHHHHHHHHHHhhcCCCcEEEEEeC
Q 019990 80 KD--VNIAVMVGGFPRKE---GMER---KDVMSKNVSIYKAQASALEKHAAPNCKVLVVAN 132 (332)
Q Consensus 80 ~~--aDiVi~~ag~~~~~---~~~~---~~~~~~N~~~~~~i~~~i~~~~~~~~~viv~sn 132 (332)
++ .|+|||+||..... ..+. ...+..|+.....+.+.+.... +..+||++|+
T Consensus 332 ~~~~ld~VVh~AGv~~~~~~~~~~~~~~~~~~~~nv~g~~~L~~~~~~~~-~~~~~V~~SS 391 (511)
T 2z5l_A 332 TAYPPNAVFHTAGILDDAVIDTLSPESFETVRGAKVCGAELLHQLTADIK-GLDAFVLFSS 391 (511)
T ss_dssp HHSCCSEEEECCCCCCCBCGGGCCHHHHHHHHHHHHHHHHHHHHHTSSCT-TCCCEEEEEE
T ss_pred hcCCCcEEEECCcccCCcccccCCHHHHHHHHHHHHHHHHHHHHHHhhcc-CCCEEEEEeC
Confidence 54 89999999975421 1122 2356778888888887776541 2235666665
|
| >1mv8_A GMD, GDP-mannose 6-dehydrogenase; rossman fold, domain-swapped dimer, enzyme complex with COFA product, oxidoreductase; HET: SUC NAD GDX; 1.55A {Pseudomonas aeruginosa} SCOP: a.100.1.4 c.2.1.6 c.26.3.1 PDB: 1mfz_A* 1muu_A* | Back alignment and structure |
|---|
Probab=98.05 E-value=5.1e-05 Score=72.13 Aligned_cols=115 Identities=15% Similarity=0.155 Sum_probs=68.5
Q ss_pred cEEEEEcCCChhHHHHHHHHHhcccCCCCCCeEEEEEecccchhhhhhhHhhhhhhccCC----------ccceEEeCCH
Q 019990 6 LRVLVTGAAGQIGYALVPMIARGIMLGPDQPVILHMLDIEPAAEALNGVKMELIDAAFPL----------LKGVVATTDV 75 (332)
Q Consensus 6 ~kI~VtGaaG~IGs~l~~~L~~~~~~~~~~~~~i~l~D~~~~~~~~~~~~~dl~~~~~~~----------~~~v~~~~~~ 75 (332)
|||+|+| +|.+|..++..|.+.|+ +|.++|++. +++............+. ..++..+++.
T Consensus 1 mkI~VIG-~G~vG~~~A~~la~~G~-------~V~~~d~~~--~~~~~l~~~~~~i~e~~l~~~~~~~~~~g~l~~t~~~ 70 (436)
T 1mv8_A 1 MRISIFG-LGYVGAVCAGCLSARGH-------EVIGVDVSS--TKIDLINQGKSPIVEPGLEALLQQGRQTGRLSGTTDF 70 (436)
T ss_dssp CEEEEEC-CSTTHHHHHHHHHHTTC-------EEEEECSCH--HHHHHHHTTCCSSCCTTHHHHHHHHHHTTCEEEESCH
T ss_pred CEEEEEC-CCHHHHHHHHHHHHCCC-------EEEEEECCH--HHHHHHhCCCCCcCCCCHHHHHHhhcccCceEEeCCH
Confidence 4899999 79999999999998875 899999864 22322111000000000 1246667788
Q ss_pred HHHhCCCcEEEEecCCCCCCCCChhHHHhhhHHHHHHHHHHHHhhcCC---CcEEEEE-eCChhh
Q 019990 76 VEACKDVNIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEKHAAP---NCKVLVV-ANPANT 136 (332)
Q Consensus 76 ~~a~~~aDiVi~~ag~~~~~~~~~~~~~~~N~~~~~~i~~~i~~~~~~---~~~viv~-snp~~~ 136 (332)
.++++++|+||++...+..... ..+...+.++++.+..+..+ +..++.. |+|...
T Consensus 71 ~~~~~~aDvviiaVptp~~~~~------~~dl~~v~~v~~~i~~~l~~~~~~~iVV~~Stv~~g~ 129 (436)
T 1mv8_A 71 KKAVLDSDVSFICVGTPSKKNG------DLDLGYIETVCREIGFAIREKSERHTVVVRSTVLPGT 129 (436)
T ss_dssp HHHHHTCSEEEECCCCCBCTTS------SBCCHHHHHHHHHHHHHHTTCCSCCEEEECSCCCTTH
T ss_pred HHHhccCCEEEEEcCCCcccCC------CcchHHHHHHHHHHHHHhcccCCCcEEEEeCCcCCCc
Confidence 7889999999999866543211 12233344555555554334 4444443 556543
|
| >3pid_A UDP-glucose 6-dehydrogenase; rossmann fold, oxidoreductase; 1.40A {Klebsiella pneumoniae} PDB: 3pln_A* 3pjg_A* 3phl_A* 3plr_A* | Back alignment and structure |
|---|
Probab=98.03 E-value=3.3e-05 Score=73.02 Aligned_cols=120 Identities=17% Similarity=0.189 Sum_probs=68.9
Q ss_pred CCcEEEEEcCCChhHHHHHHHHHhcccCCCCCCeEEEEEecccchhhhhhhHhh--------hhhhccCCccceEEeCCH
Q 019990 4 NPLRVLVTGAAGQIGYALVPMIARGIMLGPDQPVILHMLDIEPAAEALNGVKME--------LIDAAFPLLKGVVATTDV 75 (332)
Q Consensus 4 ~~~kI~VtGaaG~IGs~l~~~L~~~~~~~~~~~~~i~l~D~~~~~~~~~~~~~d--------l~~~~~~~~~~v~~~~~~ 75 (332)
++|||+|+| +|.+|..++..|.+ ++ +|.++|++. +++...... +.+.......++..+++.
T Consensus 35 ~~mkIaVIG-lG~mG~~lA~~La~-G~-------~V~~~D~~~--~~v~~l~~g~~~i~e~~l~~ll~~~~~~l~~ttd~ 103 (432)
T 3pid_A 35 EFMKITISG-TGYVGLSNGVLIAQ-NH-------EVVALDIVQ--AKVDMLNQKISPIVDKEIQEYLAEKPLNFRATTDK 103 (432)
T ss_dssp CCCEEEEEC-CSHHHHHHHHHHHT-TS-------EEEEECSCH--HHHHHHHTTCCSSCCHHHHHHHHHSCCCEEEESCH
T ss_pred CCCEEEEEC-cCHHHHHHHHHHHc-CC-------eEEEEecCH--HHhhHHhccCCccccccHHHHHhhccCCeEEEcCH
Confidence 467999999 79999999998887 65 899999864 223221110 000000001357777888
Q ss_pred HHHhCCCcEEEEecCCCCCCCCChhHHHhhhHHHHHHHHHHHHhhcCCCcEEEEEe-CChhhHHHH
Q 019990 76 VEACKDVNIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEKHAAPNCKVLVVA-NPANTNALI 140 (332)
Q Consensus 76 ~~a~~~aDiVi~~ag~~~~~~~~~~~~~~~N~~~~~~i~~~i~~~~~~~~~viv~s-np~~~~~~~ 140 (332)
.+++++||+||++...+...... ..++..++..++.+... .++..+|..| .|+.....+
T Consensus 104 ~ea~~~aDvViiaVPt~~~~~~~-----~~Dl~~V~~v~~~i~~l-~~g~iVV~~STv~pgtt~~l 163 (432)
T 3pid_A 104 HDAYRNADYVIIATPTDYDPKTN-----YFNTSTVEAVIRDVTEI-NPNAVMIIKSTIPVGFTRDI 163 (432)
T ss_dssp HHHHTTCSEEEECCCCEEETTTT-----EEECHHHHHHHHHHHHH-CTTSEEEECSCCCTTHHHHH
T ss_pred HHHHhCCCEEEEeCCCccccccc-----cccHHHHHHHHHHHHhc-CCCcEEEEeCCCChHHHHHH
Confidence 88999999999975433211100 11233344445555553 3555545444 355443333
|
| >2y0c_A BCEC, UDP-glucose dehydrogenase; oxidoreductase, carbohydrate synthesis, exopolysaccharide, C fibrosis; HET: UGA; 1.75A {Burkholderia cepacia} PDB: 2y0d_A* 2y0e_A* | Back alignment and structure |
|---|
Probab=97.98 E-value=3.9e-05 Score=73.76 Aligned_cols=112 Identities=14% Similarity=0.144 Sum_probs=70.9
Q ss_pred CCcEEEEEcCCChhHHHHHHHHHhcccCCCCCCeEEEEEecccchhhhhhhHhhhhhhccCC----------ccceEEeC
Q 019990 4 NPLRVLVTGAAGQIGYALVPMIARGIMLGPDQPVILHMLDIEPAAEALNGVKMELIDAAFPL----------LKGVVATT 73 (332)
Q Consensus 4 ~~~kI~VtGaaG~IGs~l~~~L~~~~~~~~~~~~~i~l~D~~~~~~~~~~~~~dl~~~~~~~----------~~~v~~~~ 73 (332)
..|||+|+| +|.+|..++..|.+.|+ +|.++|++. ++++...........+. ..++..++
T Consensus 7 ~~~~I~VIG-~G~vG~~lA~~la~~G~-------~V~~~d~~~--~~v~~l~~~~~~i~e~gl~~~l~~~~~~~~l~~tt 76 (478)
T 2y0c_A 7 GSMNLTIIG-SGSVGLVTGACLADIGH-------DVFCLDVDQ--AKIDILNNGGVPIHEPGLKEVIARNRSAGRLRFST 76 (478)
T ss_dssp CCCEEEEEC-CSHHHHHHHHHHHHTTC-------EEEEECSCH--HHHHHHHTTCCSSCCTTHHHHHHHHHHTTCEEEEC
T ss_pred CCceEEEEC-cCHHHHHHHHHHHhCCC-------EEEEEECCH--HHHHHHHCCCCCcCCCCHHHHHHHhcccCCEEEEC
Confidence 468999999 79999999999998886 899999863 22322111000000000 12467777
Q ss_pred CHHHHhCCCcEEEEecCCCCCCCCChhHHHhhhHHHHHHHHHHHHhhcCCCcEEEEEe
Q 019990 74 DVVEACKDVNIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEKHAAPNCKVLVVA 131 (332)
Q Consensus 74 ~~~~a~~~aDiVi~~ag~~~~~~~~~~~~~~~N~~~~~~i~~~i~~~~~~~~~viv~s 131 (332)
+..+++++||+||++...|..... ..+...++++++.+..+..++..++..|
T Consensus 77 d~~~a~~~aDvviiaVptp~~~~~------~~dl~~v~~v~~~i~~~l~~~~iVV~~S 128 (478)
T 2y0c_A 77 DIEAAVAHGDVQFIAVGTPPDEDG------SADLQYVLAAARNIGRYMTGFKVIVDKS 128 (478)
T ss_dssp CHHHHHHHCSEEEECCCCCBCTTS------SBCCHHHHHHHHHHHHHCCSCEEEEECS
T ss_pred CHHHHhhcCCEEEEEeCCCcccCC------CccHHHHHHHHHHHHHhcCCCCEEEEeC
Confidence 887889999999998776543211 1234556666677776654554444443
|
| >2q3e_A UDP-glucose 6-dehydrogenase; hexamer, structural genomics, S genomics consortium, SGC, oxidoreductase; HET: NAD UPG; 2.00A {Homo sapiens} PDB: 2qg4_A* 3khu_A* 3itk_A* 3tdk_A* 3ptz_A* 3prj_A* 3tf5_A | Back alignment and structure |
|---|
Probab=97.95 E-value=8.3e-05 Score=71.31 Aligned_cols=117 Identities=17% Similarity=0.208 Sum_probs=69.7
Q ss_pred CCcEEEEEcCCChhHHHHHHHHHhc--ccCCCCCCeEEEEEecccchhhhhhhHhhhhhhccC-------------Cccc
Q 019990 4 NPLRVLVTGAAGQIGYALVPMIARG--IMLGPDQPVILHMLDIEPAAEALNGVKMELIDAAFP-------------LLKG 68 (332)
Q Consensus 4 ~~~kI~VtGaaG~IGs~l~~~L~~~--~~~~~~~~~~i~l~D~~~~~~~~~~~~~dl~~~~~~-------------~~~~ 68 (332)
++|||+|+| +|.+|..++..|.+. ++ +|.++|++. +++.. +.....+ ...+
T Consensus 4 ~~mkI~VIG-~G~mG~~lA~~La~~g~G~-------~V~~~d~~~--~~~~~----l~~g~~~i~e~~l~~~~~~~~~~~ 69 (467)
T 2q3e_A 4 EIKKICCIG-AGYVGGPTCSVIAHMCPEI-------RVTVVDVNE--SRINA----WNSPTLPIYEPGLKEVVESCRGKN 69 (467)
T ss_dssp CCCEEEEEC-CSTTHHHHHHHHHHHCTTS-------EEEEECSCH--HHHHH----HTSSSCSSCCTTHHHHHHHHBTTT
T ss_pred CccEEEEEC-CCHHHHHHHHHHHhcCCCC-------EEEEEECCH--HHHHH----HhCCCCCcCCCCHHHHHHHhhcCC
Confidence 467999999 799999999999887 54 899999864 22221 1110000 0124
Q ss_pred eEEeCCHHHHhCCCcEEEEecCCCCCCCCChhHHHhhhHHHHHHHHHHHHhhcCCCcEEEEE-eCChh
Q 019990 69 VVATTDVVEACKDVNIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEKHAAPNCKVLVV-ANPAN 135 (332)
Q Consensus 69 v~~~~~~~~a~~~aDiVi~~ag~~~~~~~~~~~~~~~N~~~~~~i~~~i~~~~~~~~~viv~-snp~~ 135 (332)
+..+++..++++++|+||++...+........+ ...+...+.+..+.+..+..++..++.. |+|..
T Consensus 70 ~~~t~~~~e~~~~aDvViiaVptp~~~~~v~~~-~~~dl~~v~~~~~~i~~~l~~g~iVV~~STv~~g 136 (467)
T 2q3e_A 70 LFFSTNIDDAIKEADLVFISVNTPTKTYGMGKG-RAADLKYIEACARRIVQNSNGYKIVTEKSTVPVR 136 (467)
T ss_dssp EEEESCHHHHHHHCSEEEECCCCCBCCSSTTTT-TSBCCHHHHHHHHHHHHTCCSEEEEEECSCCCTT
T ss_pred EEEECCHHHHHhcCCEEEEEcCCchhhcccccc-CCCcHHHHHHHHHHHHhhCCCCCEEEECCcCCch
Confidence 666677778889999999987655422110000 0223445556666666654344444433 34544
|
| >1dlj_A UDP-glucose dehydrogenase; rossmann fold, ternary complex, crystallographic dimer, oxidoreductase; HET: NAI UGA; 1.80A {Streptococcus pyogenes} SCOP: a.100.1.4 c.2.1.6 c.26.3.1 PDB: 1dli_A* | Back alignment and structure |
|---|
Probab=97.93 E-value=5.4e-05 Score=71.17 Aligned_cols=117 Identities=13% Similarity=0.214 Sum_probs=70.4
Q ss_pred cEEEEEcCCChhHHHHHHHHHhcccCCCCCCeEEEEEecccchhhhhhhHhhhhhhccC------------CccceEEeC
Q 019990 6 LRVLVTGAAGQIGYALVPMIARGIMLGPDQPVILHMLDIEPAAEALNGVKMELIDAAFP------------LLKGVVATT 73 (332)
Q Consensus 6 ~kI~VtGaaG~IGs~l~~~L~~~~~~~~~~~~~i~l~D~~~~~~~~~~~~~dl~~~~~~------------~~~~v~~~~ 73 (332)
|||+|+| +|.+|..++..|.+ ++ +|.++|++. +++.. +.....+ ...++..++
T Consensus 1 MkI~VIG-~G~vG~~~A~~La~-G~-------~V~~~d~~~--~~~~~----l~~~~~~i~e~~l~~~~~~~~~~l~~t~ 65 (402)
T 1dlj_A 1 MKIAVAG-SGYVGLSLGVLLSL-QN-------EVTIVDILP--SKVDK----INNGLSPIQDEYIEYYLKSKQLSIKATL 65 (402)
T ss_dssp CEEEEEC-CSHHHHHHHHHHTT-TS-------EEEEECSCH--HHHHH----HHTTCCSSCCHHHHHHHHHSCCCEEEES
T ss_pred CEEEEEC-CCHHHHHHHHHHhC-CC-------EEEEEECCH--HHHHH----HHcCCCCcCCCCHHHHHHhccCcEEEeC
Confidence 4899999 69999999999987 75 899999863 22221 2111110 012456667
Q ss_pred CHHHHhCCCcEEEEecCCCCCCCCChhHHHhhhHHHHHHHHHHHHhhcCCCcEEEE-EeCChhhHHHHHHH
Q 019990 74 DVVEACKDVNIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEKHAAPNCKVLV-VANPANTNALILKE 143 (332)
Q Consensus 74 ~~~~a~~~aDiVi~~ag~~~~~~~~~~~~~~~N~~~~~~i~~~i~~~~~~~~~viv-~snp~~~~~~~~~~ 143 (332)
+..++++++|+||++...+...+..+. +...+.++++.+... .++..++. .|||+.....+...
T Consensus 66 ~~~~~~~~aDvviiavpt~~~~~~~~~-----dl~~v~~v~~~i~~l-~~~~iVV~~ST~~~g~~~~l~~~ 130 (402)
T 1dlj_A 66 DSKAAYKEAELVIIATPTNYNSRINYF-----DTQHVETVIKEVLSV-NSHATLIIKSTIPIGFITEMRQK 130 (402)
T ss_dssp CHHHHHHHCSEEEECCCCCEETTTTEE-----CCHHHHHHHHHHHHH-CSSCEEEECSCCCTTHHHHHHHH
T ss_pred CHHHHhcCCCEEEEecCCCcccCCCCc-----cHHHHHHHHHHHHhh-CCCCEEEEeCCCCccHHHHHHHH
Confidence 777788999999998765421111111 123344555555553 35545444 68888765554443
|
| >4h15_A Short chain alcohol dehydrogenase-related dehydro; structural genomics, PSI-biology, nysgrc; HET: MSE; 1.45A {Sinorhizobium meliloti} PDB: 4h16_A* | Back alignment and structure |
|---|
Probab=97.93 E-value=5.3e-05 Score=66.96 Aligned_cols=154 Identities=12% Similarity=0.088 Sum_probs=91.9
Q ss_pred CCcEEEEEcCCChhHHHHHHHHHhcccCCCCCCeEEEEEecccchhhhhhhHhhhhhhccCCccceEEeCC-------HH
Q 019990 4 NPLRVLVTGAAGQIGYALVPMIARGIMLGPDQPVILHMLDIEPAAEALNGVKMELIDAAFPLLKGVVATTD-------VV 76 (332)
Q Consensus 4 ~~~kI~VtGaaG~IGs~l~~~L~~~~~~~~~~~~~i~l~D~~~~~~~~~~~~~dl~~~~~~~~~~v~~~~~-------~~ 76 (332)
+.+.++||||++-||.+++..|++.|. +|.+.|++..+ .+.. .+ ....|++...+ ..
T Consensus 10 ~GK~alVTGas~GIG~aia~~la~~Ga-------~V~~~~r~~~~-~~~~---~~-----~~~~Dv~~~~~v~~~~~~~~ 73 (261)
T 4h15_A 10 RGKRALITAGTKGAGAATVSLFLELGA-------QVLTTARARPE-GLPE---EL-----FVEADLTTKEGCAIVAEATR 73 (261)
T ss_dssp TTCEEEESCCSSHHHHHHHHHHHHTTC-------EEEEEESSCCT-TSCT---TT-----EEECCTTSHHHHHHHHHHHH
T ss_pred CCCEEEEeccCcHHHHHHHHHHHHcCC-------EEEEEECCchh-CCCc---EE-----EEEcCCCCHHHHHHHHHHHH
Confidence 347899999999999999999999886 89999985421 1110 00 01122222221 22
Q ss_pred HHhCCCcEEEEecCCCCCC-----CCChh---HHHhhhHHHH----HHHHHHHHhhcCCCcEEEEEeCChhhHHHHHHHH
Q 019990 77 EACKDVNIAVMVGGFPRKE-----GMERK---DVMSKNVSIY----KAQASALEKHAAPNCKVLVVANPANTNALILKEF 144 (332)
Q Consensus 77 ~a~~~aDiVi~~ag~~~~~-----~~~~~---~~~~~N~~~~----~~i~~~i~~~~~~~~~viv~snp~~~~~~~~~~~ 144 (332)
+.+-..|++|+.||..... ..+.+ ..++.|+... +..++.+.+.+ .+.+|++++....
T Consensus 74 ~~~G~iDilVnnAG~~~~~~~~~~~~~~e~~~~~~~vNl~g~~~~~~~~~p~m~~~~--~G~Iv~isS~~~~-------- 143 (261)
T 4h15_A 74 QRLGGVDVIVHMLGGSSAAGGGFSALSDDDWYNELSLNLFAAVRLDRQLVPDMVARG--SGVVVHVTSIQRV-------- 143 (261)
T ss_dssp HHTSSCSEEEECCCCCCCCSSCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHT--CEEEEEECCGGGT--------
T ss_pred HHcCCCCEEEECCCCCccCCCCcccCCHHHHHHHHHHHhHHHHHHHHhhchhhhhcC--CceEEEEEehhhc--------
Confidence 3345789999999864321 12332 2456676544 55555666553 5677777753321
Q ss_pred CCCCCCCc-EEEeecccHHHHHHHHHHHcCCCCCCeeeeEEEec
Q 019990 145 APSIPAKN-ITCLTRLDHNRAMGQISERLKVHVSDVKNVIIWGN 187 (332)
Q Consensus 145 ~~~~~~~~-i~~~t~l~~~r~~~~~a~~~~v~~~~v~~~~V~G~ 187 (332)
.+.|... .|+.+|-.-..+.+.+|..++ +..||. +.+-+
T Consensus 144 -~~~~~~~~~Y~asKaal~~lt~~lA~Ela--~~gIrV-N~V~P 183 (261)
T 4h15_A 144 -LPLPESTTAYAAAKAALSTYSKAMSKEVS--PKGVRV-VRVSP 183 (261)
T ss_dssp -SCCTTTCHHHHHHHHHHHHHHHHHHHHHG--GGTEEE-EEEEE
T ss_pred -cCCCCccHHHHHHHHHHHHHHHHHHHHhh--hhCeEE-EEEeC
Confidence 1233332 456677777778888888865 566774 44444
|
| >3vtf_A UDP-glucose 6-dehydrogenase; two discrete alpha/beta domains, oxidoreducta; HET: UPG; 2.00A {Pyrobaculum islandicum} | Back alignment and structure |
|---|
Probab=97.91 E-value=0.00012 Score=69.29 Aligned_cols=114 Identities=14% Similarity=0.086 Sum_probs=72.1
Q ss_pred CCcEEEEEcCCChhHHHHHHHHHhcccCCCCCCeEEEEEecccchhhhhhhHhhhhhhccC--------------Cccce
Q 019990 4 NPLRVLVTGAAGQIGYALVPMIARGIMLGPDQPVILHMLDIEPAAEALNGVKMELIDAAFP--------------LLKGV 69 (332)
Q Consensus 4 ~~~kI~VtGaaG~IGs~l~~~L~~~~~~~~~~~~~i~l~D~~~~~~~~~~~~~dl~~~~~~--------------~~~~v 69 (332)
+|.+|+|+| .|+||..++..|...|+ +|..+|++. ++.. .|+....+ ..+++
T Consensus 20 ~m~~IaViG-lGYVGLp~A~~~A~~G~-------~V~g~Did~--~kV~----~ln~G~~pi~Epgl~ell~~~~~~g~l 85 (444)
T 3vtf_A 20 HMASLSVLG-LGYVGVVHAVGFALLGH-------RVVGYDVNP--SIVE----RLRAGRPHIYEPGLEEALGRALSSGRL 85 (444)
T ss_dssp CCCEEEEEC-CSHHHHHHHHHHHHHTC-------EEEEECSCH--HHHH----HHHTTCCSSCCTTHHHHHHHHHHTTCE
T ss_pred CCCEEEEEc-cCHHHHHHHHHHHhCCC-------cEEEEECCH--HHHH----HHHCCCCCCCCCCHHHHHHHHHHcCCe
Confidence 467999999 89999999999998886 899999964 2222 22221111 12467
Q ss_pred EEeCCHHHHhCCCcEEEEecCCCCCCC-CChhHHHhhhHHHHHHHHHHHHhhcCCCcEEEEEe-CChh
Q 019990 70 VATTDVVEACKDVNIAVMVGGFPRKEG-MERKDVMSKNVSIYKAQASALEKHAAPNCKVLVVA-NPAN 135 (332)
Q Consensus 70 ~~~~~~~~a~~~aDiVi~~ag~~~~~~-~~~~~~~~~N~~~~~~i~~~i~~~~~~~~~viv~s-np~~ 135 (332)
+.+++..++++++|++|++.+.|.... .+...++. ...+.+++.++... +...||+=| -|+.
T Consensus 86 ~~tt~~~~ai~~ad~~~I~VpTP~~~d~~~Dl~~v~---~a~~~I~~~l~~~~-~g~lVV~eSTVppG 149 (444)
T 3vtf_A 86 SFAESAEEAVAATDATFIAVGTPPAPDGSADLRYVE---AAARAVGRGIRAKG-RWHLVVVKSTVPPG 149 (444)
T ss_dssp EECSSHHHHHHTSSEEEECCCCCBCTTSSBCCHHHH---HHHHHHHHHHHHHC-SCCEEEECSCCCTT
T ss_pred eEEcCHHHHHhcCCceEEEecCCCCCCCCCCcHHHH---HHHHHHHHHHhhcC-CCeEEEEeCCCCCc
Confidence 778888899999999999988875432 22112222 23455555565433 333444433 3553
|
| >4b79_A PA4098, probable short-chain dehydrogenase; oxidoreductase, infectious disease, structure-based inhibito; HET: NAD; 1.98A {Pseudomonas aeruginosa PAO1} | Back alignment and structure |
|---|
Probab=97.91 E-value=2.1e-05 Score=68.68 Aligned_cols=156 Identities=14% Similarity=0.110 Sum_probs=93.8
Q ss_pred CcEEEEEcCCChhHHHHHHHHHhcccCCCCCCeEEEEEecccchhhhhhhHhhhhhhccCCccceEEeCCH---HHHhCC
Q 019990 5 PLRVLVTGAAGQIGYALVPMIARGIMLGPDQPVILHMLDIEPAAEALNGVKMELIDAAFPLLKGVVATTDV---VEACKD 81 (332)
Q Consensus 5 ~~kI~VtGaaG~IGs~l~~~L~~~~~~~~~~~~~i~l~D~~~~~~~~~~~~~dl~~~~~~~~~~v~~~~~~---~~a~~~ 81 (332)
.+.++||||++-||.+++..|++.|. +|++.|++.. .+.... .........|++...++ .+.+..
T Consensus 11 GK~alVTGas~GIG~aia~~la~~Ga-------~Vv~~~~~~~--~~~~~~---~~~~~~~~~Dv~~~~~v~~~~~~~g~ 78 (242)
T 4b79_A 11 GQQVLVTGGSSGIGAAIAMQFAELGA-------EVVALGLDAD--GVHAPR---HPRIRREELDITDSQRLQRLFEALPR 78 (242)
T ss_dssp TCEEEEETTTSHHHHHHHHHHHHTTC-------EEEEEESSTT--STTSCC---CTTEEEEECCTTCHHHHHHHHHHCSC
T ss_pred CCEEEEeCCCCHHHHHHHHHHHHCCC-------EEEEEeCCHH--HHhhhh---cCCeEEEEecCCCHHHHHHHHHhcCC
Confidence 47899999999999999999999886 8999998642 222110 00000112344333333 334567
Q ss_pred CcEEEEecCCCCCC-CCChh---HHHhhhHHHHHH----HHHHHHhhcCCCcEEEEEeCChhhHHHHHHHHCCCCCCCcE
Q 019990 82 VNIAVMVGGFPRKE-GMERK---DVMSKNVSIYKA----QASALEKHAAPNCKVLVVANPANTNALILKEFAPSIPAKNI 153 (332)
Q Consensus 82 aDiVi~~ag~~~~~-~~~~~---~~~~~N~~~~~~----i~~~i~~~~~~~~~viv~snp~~~~~~~~~~~~~~~~~~~i 153 (332)
.|++|+.||..+.. ..+.+ ..+..|+...-. .++.+++. .+.+|++|+-... .+.+....
T Consensus 79 iDiLVNNAGi~~~~~~~~~~~w~~~~~vNl~g~~~~~~~~~p~m~~~---~G~IVnisS~~~~---------~~~~~~~~ 146 (242)
T 4b79_A 79 LDVLVNNAGISRDREEYDLATFERVLRLNLSAAMLASQLARPLLAQR---GGSILNIASMYST---------FGSADRPA 146 (242)
T ss_dssp CSEEEECCCCCCGGGGGSHHHHHHHHHHHTHHHHHHHHHHHHHHHHH---CEEEEEECCGGGT---------SCCSSCHH
T ss_pred CCEEEECCCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHc---CCeEEEEeecccc---------CCCCCCHH
Confidence 89999999975422 12222 245667655533 34444332 3677888763221 12333335
Q ss_pred EEeecccHHHHHHHHHHHcCCCCCCeeeeEEEec
Q 019990 154 TCLTRLDHNRAMGQISERLKVHVSDVKNVIIWGN 187 (332)
Q Consensus 154 ~~~t~l~~~r~~~~~a~~~~v~~~~v~~~~V~G~ 187 (332)
|+.+|-.-..+.+.+|..++ +..||. |.+-+
T Consensus 147 Y~asKaav~~ltr~lA~Ela--~~gIrV-NaV~P 177 (242)
T 4b79_A 147 YSASKGAIVQLTRSLACEYA--AERIRV-NAIAP 177 (242)
T ss_dssp HHHHHHHHHHHHHHHHHHHG--GGTEEE-EEEEE
T ss_pred HHHHHHHHHHHHHHHHHHhh--hcCeEE-EEEEe
Confidence 67777777778888888876 566773 54454
|
| >4a7p_A UDP-glucose dehydrogenase; oxidoreductase, carbohydrate synthesis, exopolysaccharide; HET: NAD; 3.40A {Sphingomonas elodea} | Back alignment and structure |
|---|
Probab=97.89 E-value=0.00025 Score=67.40 Aligned_cols=108 Identities=18% Similarity=0.242 Sum_probs=71.6
Q ss_pred CcEEEEEcCCChhHHHHHHHHHhcccCCCCCCeEEEEEecccchhhhhhhHhhhhhhccC--------------CccceE
Q 019990 5 PLRVLVTGAAGQIGYALVPMIARGIMLGPDQPVILHMLDIEPAAEALNGVKMELIDAAFP--------------LLKGVV 70 (332)
Q Consensus 5 ~~kI~VtGaaG~IGs~l~~~L~~~~~~~~~~~~~i~l~D~~~~~~~~~~~~~dl~~~~~~--------------~~~~v~ 70 (332)
..+|+|+| +|.+|..++..|.+.|+ +|+++|++.. +.. .+.....+ ...++.
T Consensus 8 ~~~~~vIG-lG~vG~~~A~~La~~G~-------~V~~~D~~~~--kv~----~l~~g~~~~~epgl~~~~~~~~~~g~l~ 73 (446)
T 4a7p_A 8 SVRIAMIG-TGYVGLVSGACFSDFGH-------EVVCVDKDAR--KIE----LLHQNVMPIYEPGLDALVASNVKAGRLS 73 (446)
T ss_dssp CCEEEEEC-CSHHHHHHHHHHHHTTC-------EEEEECSCST--THH----HHTTTCCSSCCTTHHHHHHHHHHTTCEE
T ss_pred ceEEEEEc-CCHHHHHHHHHHHHCCC-------EEEEEeCCHH--HHH----HHhcCCCCccCCCHHHHHHhhcccCCEE
Confidence 57899999 79999999999999886 8999999752 232 22211100 023577
Q ss_pred EeCCHHHHhCCCcEEEEecCCCCCCCCChhHHHhhhHHHHHHHHHHHHhhcCCCcEEEEEe
Q 019990 71 ATTDVVEACKDVNIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEKHAAPNCKVLVVA 131 (332)
Q Consensus 71 ~~~~~~~a~~~aDiVi~~ag~~~~~~~~~~~~~~~N~~~~~~i~~~i~~~~~~~~~viv~s 131 (332)
.+++..+++++||+||++.+.|...+.. ..++..++++++.+..+..++..+|..|
T Consensus 74 ~ttd~~ea~~~aDvvii~Vptp~~~~~~-----~~Dl~~v~~v~~~i~~~l~~g~iVV~~S 129 (446)
T 4a7p_A 74 FTTDLAEGVKDADAVFIAVGTPSRRGDG-----HADLSYVFAAAREIAENLTKPSVIVTKS 129 (446)
T ss_dssp EESCHHHHHTTCSEEEECCCCCBCTTTC-----CBCTHHHHHHHHHHHHSCCSCCEEEECS
T ss_pred EECCHHHHHhcCCEEEEEcCCCCccccC-----CccHHHHHHHHHHHHHhcCCCCEEEEeC
Confidence 7888888999999999987766432111 1234555666677766654554545444
|
| >1jay_A Coenzyme F420H2:NADP+ oxidoreductase (FNO); rossman fold, structural genomics; HET: NAP F42; 1.65A {Archaeoglobus fulgidus} SCOP: c.2.1.6 PDB: 1jax_A* | Back alignment and structure |
|---|
Probab=97.84 E-value=8.8e-05 Score=63.01 Aligned_cols=72 Identities=18% Similarity=0.134 Sum_probs=47.9
Q ss_pred cEEEEEcCCChhHHHHHHHHHhcccCCCCCCeEEEEEecccchhhhhhhHhhhhhhccCCccceEEeCCHHHHhCCCcEE
Q 019990 6 LRVLVTGAAGQIGYALVPMIARGIMLGPDQPVILHMLDIEPAAEALNGVKMELIDAAFPLLKGVVATTDVVEACKDVNIA 85 (332)
Q Consensus 6 ~kI~VtGaaG~IGs~l~~~L~~~~~~~~~~~~~i~l~D~~~~~~~~~~~~~dl~~~~~~~~~~v~~~~~~~~a~~~aDiV 85 (332)
|||+|+||+|++|++++..|.+.++ +|.++|++. +.......++.. ... ..++. ..++.++++++|+|
T Consensus 1 m~i~iiGa~G~~G~~ia~~l~~~g~-------~V~~~~r~~--~~~~~~~~~~~~-~~~-~~~~~-~~~~~~~~~~~D~V 68 (212)
T 1jay_A 1 MRVALLGGTGNLGKGLALRLATLGH-------EIVVGSRRE--EKAEAKAAEYRR-IAG-DASIT-GMKNEDAAEACDIA 68 (212)
T ss_dssp CEEEEETTTSHHHHHHHHHHHTTTC-------EEEEEESSH--HHHHHHHHHHHH-HHS-SCCEE-EEEHHHHHHHCSEE
T ss_pred CeEEEEcCCCHHHHHHHHHHHHCCC-------EEEEEeCCH--HHHHHHHHHhcc-ccc-cCCCC-hhhHHHHHhcCCEE
Confidence 4899999889999999999998775 899999853 222221111110 000 12344 34667778999999
Q ss_pred EEec
Q 019990 86 VMVG 89 (332)
Q Consensus 86 i~~a 89 (332)
|++.
T Consensus 69 i~~~ 72 (212)
T 1jay_A 69 VLTI 72 (212)
T ss_dssp EECS
T ss_pred EEeC
Confidence 9975
|
| >3k6j_A Protein F01G10.3, confirmed by transcript evidenc; rossmann fold, oxidoreductase; 2.20A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=97.84 E-value=0.0002 Score=68.13 Aligned_cols=99 Identities=12% Similarity=0.103 Sum_probs=63.1
Q ss_pred CCcEEEEEcCCChhHHHHHHHHHhcccCCCCCCeEEEEEecccchhhhhhhHh-hhhhh----cc------CCccceEEe
Q 019990 4 NPLRVLVTGAAGQIGYALVPMIARGIMLGPDQPVILHMLDIEPAAEALNGVKM-ELIDA----AF------PLLKGVVAT 72 (332)
Q Consensus 4 ~~~kI~VtGaaG~IGs~l~~~L~~~~~~~~~~~~~i~l~D~~~~~~~~~~~~~-dl~~~----~~------~~~~~v~~~ 72 (332)
+.+||+|+| +|.+|+.++..|+..|+ +|+++|++.. +...... .+... .. .....++.+
T Consensus 53 ~i~kVaVIG-aG~MG~~IA~~la~aG~-------~V~l~D~~~e--~a~~~i~~~l~~~~~~G~l~~~~~~~~~~~i~~t 122 (460)
T 3k6j_A 53 DVNSVAIIG-GGTMGKAMAICFGLAGI-------ETFLVVRNEQ--RCKQELEVMYAREKSFKRLNDKRIEKINANLKIT 122 (460)
T ss_dssp CCCEEEEEC-CSHHHHHHHHHHHHTTC-------EEEEECSCHH--HHHHHHHHHHHHHHHTTSCCHHHHHHHHTTEEEE
T ss_pred cCCEEEEEC-CCHHHHHHHHHHHHCCC-------eEEEEECcHH--HHHHHHHHHHHHHHHcCCCCHHHHHHHhcceEEe
Confidence 457999999 69999999999999886 8999999752 1111110 11110 00 012356666
Q ss_pred CCHHHHhCCCcEEEEecCCCCCCCCChhHHHhhhHHHHHHHHHHHHhhcCCCcEE
Q 019990 73 TDVVEACKDVNIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEKHAAPNCKV 127 (332)
Q Consensus 73 ~~~~~a~~~aDiVi~~ag~~~~~~~~~~~~~~~N~~~~~~i~~~i~~~~~~~~~v 127 (332)
+++ +++++||+||.+... +....+.+...+..+++|++++
T Consensus 123 ~dl-~al~~aDlVIeAVpe--------------~~~vk~~v~~~l~~~~~~~aIl 162 (460)
T 3k6j_A 123 SDF-HKLSNCDLIVESVIE--------------DMKLKKELFANLENICKSTCIF 162 (460)
T ss_dssp SCG-GGCTTCSEEEECCCS--------------CHHHHHHHHHHHHTTSCTTCEE
T ss_pred CCH-HHHccCCEEEEcCCC--------------CHHHHHHHHHHHHhhCCCCCEE
Confidence 776 579999999987421 1333455666777777566543
|
| >3mog_A Probable 3-hydroxybutyryl-COA dehydrogenase; structural genomics, PSI, protein structure initiative, NYSG oxidoreductase; 2.20A {Escherichia coli} | Back alignment and structure |
|---|
Probab=97.81 E-value=0.0001 Score=70.94 Aligned_cols=101 Identities=23% Similarity=0.287 Sum_probs=61.7
Q ss_pred CCCCCcEEEEEcCCChhHHHHHHHHHhcccCCCCCCeEEEEEecccchhhhhhhHhhhhh----hcc--C--------Cc
Q 019990 1 MAKNPLRVLVTGAAGQIGYALVPMIARGIMLGPDQPVILHMLDIEPAAEALNGVKMELID----AAF--P--------LL 66 (332)
Q Consensus 1 m~~~~~kI~VtGaaG~IGs~l~~~L~~~~~~~~~~~~~i~l~D~~~~~~~~~~~~~dl~~----~~~--~--------~~ 66 (332)
|+++.+||+|+| +|.+|+.++..|+..|+ +|+++|++. +.+......+.. ... . ..
T Consensus 1 Msm~~~kVgVIG-aG~MG~~IA~~la~aG~-------~V~l~D~~~--e~l~~~~~~i~~~l~~~~~~g~~~~~~~~~~~ 70 (483)
T 3mog_A 1 MSLNVQTVAVIG-SGTMGAGIAEVAASHGH-------QVLLYDISA--EALTRAIDGIHARLNSRVTRGKLTAETCERTL 70 (483)
T ss_dssp ---CCCCEEEEC-CSHHHHHHHHHHHHTTC-------CEEEECSCH--HHHHHHHHHHHHHHHTTTTTTSSCHHHHHHHH
T ss_pred CCCCCCEEEEEC-cCHHHHHHHHHHHHCCC-------eEEEEECCH--HHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHH
Confidence 655677999999 69999999999999886 899999864 233221111110 000 0 01
Q ss_pred cceEEeCCHHHHhCCCcEEEEecCCCCCCCCChhHHHhhhHHHHHHHHHHHHhhcCCCcE
Q 019990 67 KGVVATTDVVEACKDVNIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEKHAAPNCK 126 (332)
Q Consensus 67 ~~v~~~~~~~~a~~~aDiVi~~ag~~~~~~~~~~~~~~~N~~~~~~i~~~i~~~~~~~~~ 126 (332)
..++..+++ +++++||+||.+.. + +....+.+...+..+.+++..
T Consensus 71 ~~i~~~~~~-~~~~~aDlVIeAVp-------e-------~~~vk~~v~~~l~~~~~~~~I 115 (483)
T 3mog_A 71 KRLIPVTDI-HALAAADLVIEAAS-------E-------RLEVKKALFAQLAEVCPPQTL 115 (483)
T ss_dssp HTEEEECCG-GGGGGCSEEEECCC-------C-------CHHHHHHHHHHHHHHSCTTCE
T ss_pred hceeEeCCH-HHhcCCCEEEEcCC-------C-------cHHHHHHHHHHHHHhhccCcE
Confidence 245666666 57899999998741 0 123334555666666655654
|
| >3mje_A AMPHB; rossmann fold, oxidoreductase; HET: NDP; 1.36A {Streptomyces nodosus} PDB: 3mjc_A* 3mjs_A* 3mjv_A* 3mjt_A* | Back alignment and structure |
|---|
Probab=97.81 E-value=5.6e-05 Score=72.96 Aligned_cols=119 Identities=13% Similarity=0.090 Sum_probs=74.7
Q ss_pred cEEEEEcCCChhHHHHHHHHHhcccCCCCCCeEEEEEecccch-hhhhhhHhhhhhhcc---CCccceEEeCCHHHHhC-
Q 019990 6 LRVLVTGAAGQIGYALVPMIARGIMLGPDQPVILHMLDIEPAA-EALNGVKMELIDAAF---PLLKGVVATTDVVEACK- 80 (332)
Q Consensus 6 ~kI~VtGaaG~IGs~l~~~L~~~~~~~~~~~~~i~l~D~~~~~-~~~~~~~~dl~~~~~---~~~~~v~~~~~~~~a~~- 80 (332)
++++||||+|.||.+++..|++.|.. .+++.+++... +.......++..... ....|++...++.+.++
T Consensus 240 ~~vLITGgsgGIG~alA~~La~~Ga~------~vvl~~R~~~~~~~~~~l~~~l~~~g~~v~~~~~Dvtd~~~v~~~~~~ 313 (496)
T 3mje_A 240 GSVLVTGGTGGIGGRVARRLAEQGAA------HLVLTSRRGADAPGAAELRAELEQLGVRVTIAACDAADREALAALLAE 313 (496)
T ss_dssp SEEEEETCSSHHHHHHHHHHHHTTCS------EEEEEESSGGGSTTHHHHHHHHHHTTCEEEEEECCTTCHHHHHHHHHT
T ss_pred CEEEEECCCCchHHHHHHHHHHCCCc------EEEEEeCCCCChHHHHHHHHHHHhcCCeEEEEEccCCCHHHHHHHHHH
Confidence 68999999999999999999987742 68888875321 122222233332111 11234444444444443
Q ss_pred -----CCcEEEEecCCC-CCC---CCCh---hHHHhhhHHHHHHHHHHHHhhcCCCcEEEEEeC
Q 019990 81 -----DVNIAVMVGGFP-RKE---GMER---KDVMSKNVSIYKAQASALEKHAAPNCKVLVVAN 132 (332)
Q Consensus 81 -----~aDiVi~~ag~~-~~~---~~~~---~~~~~~N~~~~~~i~~~i~~~~~~~~~viv~sn 132 (332)
..|+|||.||+. ... ..+. ...+..|+.....+.+.+.... ...||++|+
T Consensus 314 i~~~g~ld~vVh~AGv~~~~~~l~~~t~e~~~~vl~~nv~g~~~L~~~~~~~~--~~~iV~~SS 375 (496)
T 3mje_A 314 LPEDAPLTAVFHSAGVAHDDAPVADLTLGQLDALMRAKLTAARHLHELTADLD--LDAFVLFSS 375 (496)
T ss_dssp CCTTSCEEEEEECCCCCCSCCCTTTCCHHHHHHHHHTTHHHHHHHHHHHTTSC--CSEEEEEEE
T ss_pred HHHhCCCeEEEECCcccCCCCCcccCCHHHHHHHHHHHHHHHHHHHHHhhccC--CCEEEEEeC
Confidence 369999999975 221 1222 2467889999999988888763 346666665
|
| >3ghy_A Ketopantoate reductase protein; oxidoreductase, NAD-binding domain, PSI-2, NYSGXRC, structur genomics, protein structure initiative; 2.00A {Ralstonia solanacearum} | Back alignment and structure |
|---|
Probab=97.75 E-value=7.1e-05 Score=68.53 Aligned_cols=100 Identities=18% Similarity=0.209 Sum_probs=61.3
Q ss_pred CcEEEEEcCCChhHHHHHHHHHhcccCCCCCCeEEEEEecccchhhhhhhHhhhhhhcc--C---CccceEEeCCHHHHh
Q 019990 5 PLRVLVTGAAGQIGYALVPMIARGIMLGPDQPVILHMLDIEPAAEALNGVKMELIDAAF--P---LLKGVVATTDVVEAC 79 (332)
Q Consensus 5 ~~kI~VtGaaG~IGs~l~~~L~~~~~~~~~~~~~i~l~D~~~~~~~~~~~~~dl~~~~~--~---~~~~v~~~~~~~~a~ 79 (332)
+|||+|+| +|.+|+.++..|.+.+. +|.++|++. ...... + ..... + ....+....+..+ +
T Consensus 3 ~mkI~IiG-aG~~G~~~a~~L~~~g~-------~V~~~~r~~---~~~~~~-~-~g~~~~~~~~~~~~~~~~~~~~~~-~ 68 (335)
T 3ghy_A 3 LTRICIVG-AGAVGGYLGARLALAGE-------AINVLARGA---TLQALQ-T-AGLRLTEDGATHTLPVRATHDAAA-L 68 (335)
T ss_dssp CCCEEEES-CCHHHHHHHHHHHHTTC-------CEEEECCHH---HHHHHH-H-TCEEEEETTEEEEECCEEESCHHH-H
T ss_pred CCEEEEEC-cCHHHHHHHHHHHHCCC-------EEEEEEChH---HHHHHH-H-CCCEEecCCCeEEEeeeEECCHHH-c
Confidence 57999999 69999999999998775 799999742 221110 0 00000 0 1112344456544 6
Q ss_pred CCCcEEEEecCCCCCCCCChhHHHhhhHHHHHHHHHHHHhhcCCCcEEEEEeCCh
Q 019990 80 KDVNIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEKHAAPNCKVLVVANPA 134 (332)
Q Consensus 80 ~~aDiVi~~ag~~~~~~~~~~~~~~~N~~~~~~i~~~i~~~~~~~~~viv~snp~ 134 (332)
.++|+||++.- + ..+.++++.++.+-.++..++.+.|.+
T Consensus 69 ~~~D~Vilavk----~------------~~~~~~~~~l~~~l~~~~~iv~~~nGi 107 (335)
T 3ghy_A 69 GEQDVVIVAVK----A------------PALESVAAGIAPLIGPGTCVVVAMNGV 107 (335)
T ss_dssp CCCSEEEECCC----H------------HHHHHHHGGGSSSCCTTCEEEECCSSS
T ss_pred CCCCEEEEeCC----c------------hhHHHHHHHHHhhCCCCCEEEEECCCC
Confidence 89999998741 0 113455555655544566777778874
|
| >3abi_A Putative uncharacterized protein PH1688; L-lysine dehydrogenase, oxidoreductase; HET: NAD; 2.44A {Pyrococcus horikoshii} | Back alignment and structure |
|---|
Probab=97.75 E-value=2.4e-05 Score=72.66 Aligned_cols=75 Identities=23% Similarity=0.296 Sum_probs=46.3
Q ss_pred CCCCCcEEEEEcCCChhHHHHHHHHHhcccCCCCCCeEEEEEecccchhhhhhhHhhhhhhccCCccceEEeCCHHHHhC
Q 019990 1 MAKNPLRVLVTGAAGQIGYALVPMIARGIMLGPDQPVILHMLDIEPAAEALNGVKMELIDAAFPLLKGVVATTDVVEACK 80 (332)
Q Consensus 1 m~~~~~kI~VtGaaG~IGs~l~~~L~~~~~~~~~~~~~i~l~D~~~~~~~~~~~~~dl~~~~~~~~~~v~~~~~~~~a~~ 80 (332)
|.-++|||+|+|| |++|+.++..|.+. . +|.+.|++. +++.. +.+.......|+.....+.+.++
T Consensus 12 ~~g~~mkilvlGa-G~vG~~~~~~L~~~-~-------~v~~~~~~~--~~~~~----~~~~~~~~~~d~~d~~~l~~~~~ 76 (365)
T 3abi_A 12 IEGRHMKVLILGA-GNIGRAIAWDLKDE-F-------DVYIGDVNN--ENLEK----VKEFATPLKVDASNFDKLVEVMK 76 (365)
T ss_dssp ----CCEEEEECC-SHHHHHHHHHHTTT-S-------EEEEEESCH--HHHHH----HTTTSEEEECCTTCHHHHHHHHT
T ss_pred ccCCccEEEEECC-CHHHHHHHHHHhcC-C-------CeEEEEcCH--HHHHH----HhccCCcEEEecCCHHHHHHHHh
Confidence 4446789999995 99999999888643 2 788999853 22321 11111111123333345667789
Q ss_pred CCcEEEEecC
Q 019990 81 DVNIAVMVGG 90 (332)
Q Consensus 81 ~aDiVi~~ag 90 (332)
++|+||.+++
T Consensus 77 ~~DvVi~~~p 86 (365)
T 3abi_A 77 EFELVIGALP 86 (365)
T ss_dssp TCSEEEECCC
T ss_pred CCCEEEEecC
Confidence 9999999864
|
| >3qp9_A Type I polyketide synthase pikaii; rossmann fold, ketoreductase, epimerization, oxidoreductase; 1.88A {Streptomyces venezuelae} | Back alignment and structure |
|---|
Probab=97.71 E-value=6.2e-05 Score=73.25 Aligned_cols=123 Identities=15% Similarity=0.093 Sum_probs=74.5
Q ss_pred CcEEEEEcCCChhHHHHHHHHHhcccCCCCCCeEEEEE-ecccch-----------hhhhhhHhhhhhhc--c-CCccce
Q 019990 5 PLRVLVTGAAGQIGYALVPMIARGIMLGPDQPVILHML-DIEPAA-----------EALNGVKMELIDAA--F-PLLKGV 69 (332)
Q Consensus 5 ~~kI~VtGaaG~IGs~l~~~L~~~~~~~~~~~~~i~l~-D~~~~~-----------~~~~~~~~dl~~~~--~-~~~~~v 69 (332)
.+.++||||+|.||.+++..|++.+. ..+++. +++... +.+.....++.... . ....|+
T Consensus 251 ~~~vLITGgsgGIG~~lA~~La~~G~------~~vvl~~~R~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~v~~~~~Dv 324 (525)
T 3qp9_A 251 DGTVLVTGAEEPAAAEAARRLARDGA------GHLLLHTTPSGSEGAEGTSGAAEDSGLAGLVAELADLGATATVVTCDL 324 (525)
T ss_dssp TSEEEESSTTSHHHHHHHHHHHHHTC------CEEEEEECCCC---------------CHHHHHHHHHHTCEEEEEECCT
T ss_pred CCEEEEECCCCcHHHHHHHHHHHcCC------CEEEEEeCCCCCCccccccccccCHHHHHHHHHHHhcCCEEEEEECCC
Confidence 46799999999999999999998775 147777 775311 12222333333221 1 112344
Q ss_pred EEeCCHHHHhC------CCcEEEEecCCCCCC---CCCh---hHHHhhhHHHHHHHHHHHHhhcCC---CcEEEEEeCC
Q 019990 70 VATTDVVEACK------DVNIAVMVGGFPRKE---GMER---KDVMSKNVSIYKAQASALEKHAAP---NCKVLVVANP 133 (332)
Q Consensus 70 ~~~~~~~~a~~------~aDiVi~~ag~~~~~---~~~~---~~~~~~N~~~~~~i~~~i~~~~~~---~~~viv~snp 133 (332)
+...++.+.++ ..|+|||.||+.... ..+. ...+..|+.+...+.+.+...... ...||++|+-
T Consensus 325 td~~~v~~~~~~i~~~g~id~vVh~AGv~~~~~~~~~~~~~~~~v~~~nv~g~~~L~~~~~~~~~~~~~~~~iV~~SS~ 403 (525)
T 3qp9_A 325 TDAEAAARLLAGVSDAHPLSAVLHLPPTVDSEPLAATDADALARVVTAKATAALHLDRLLREAAAAGGRPPVLVLFSSV 403 (525)
T ss_dssp TSHHHHHHHHHTSCTTSCEEEEEECCCCCCCCCTTTCCHHHHHHHHHHHHHHHHHHHHHHHHTC----CCCEEEEEEEG
T ss_pred CCHHHHHHHHHHHHhcCCCcEEEECCcCCCCCchhhCCHHHHHHHHHHHHHHHHHHHHHhccccccCCCCCEEEEECCH
Confidence 44444444444 359999999975321 1222 235678999998988888776311 3466766653
|
| >1lu9_A Methylene tetrahydromethanopterin dehydrogenase; alpha/beta twisted open sheet structure, oxidoreductase; 1.90A {Methylobacterium extorquens} SCOP: c.2.1.7 c.58.1.4 PDB: 1lua_A* | Back alignment and structure |
|---|
Probab=97.68 E-value=7.4e-05 Score=66.86 Aligned_cols=80 Identities=10% Similarity=0.106 Sum_probs=53.0
Q ss_pred CCcEEEEEcCCChhHHHHHHHHHhcccCCCCCCeEEEEEecccchhhhhhhHhhhhhh-ccC-CccceEEeCCHHHHhCC
Q 019990 4 NPLRVLVTGAAGQIGYALVPMIARGIMLGPDQPVILHMLDIEPAAEALNGVKMELIDA-AFP-LLKGVVATTDVVEACKD 81 (332)
Q Consensus 4 ~~~kI~VtGaaG~IGs~l~~~L~~~~~~~~~~~~~i~l~D~~~~~~~~~~~~~dl~~~-~~~-~~~~v~~~~~~~~a~~~ 81 (332)
+.++++||||+|.+|++++..|++.|. +|++++++. +++.....++... ... ...+++...++.+++++
T Consensus 118 ~gk~vlVtGaaGGiG~aia~~L~~~G~-------~V~i~~R~~--~~~~~l~~~~~~~~~~~~~~~D~~~~~~~~~~~~~ 188 (287)
T 1lu9_A 118 KGKKAVVLAGTGPVGMRSAALLAGEGA-------EVVLCGRKL--DKAQAAADSVNKRFKVNVTAAETADDASRAEAVKG 188 (287)
T ss_dssp TTCEEEEETCSSHHHHHHHHHHHHTTC-------EEEEEESSH--HHHHHHHHHHHHHHTCCCEEEECCSHHHHHHHTTT
T ss_pred CCCEEEEECCCcHHHHHHHHHHHHCcC-------EEEEEECCH--HHHHHHHHHHHhcCCcEEEEecCCCHHHHHHHHHh
Confidence 457899999999999999999998875 799999853 2333333333221 111 11233322345667888
Q ss_pred CcEEEEecCCC
Q 019990 82 VNIAVMVGGFP 92 (332)
Q Consensus 82 aDiVi~~ag~~ 92 (332)
+|+||+++|..
T Consensus 189 ~DvlVn~ag~g 199 (287)
T 1lu9_A 189 AHFVFTAGAIG 199 (287)
T ss_dssp CSEEEECCCTT
T ss_pred CCEEEECCCcc
Confidence 99999999753
|
| >2ptg_A Enoyl-acyl carrier reductase; apicomplexa, enoyl (acyl-carrier-P reductase, oxidoreductase; 2.60A {Eimeria tenella} | Back alignment and structure |
|---|
Probab=97.66 E-value=0.00011 Score=66.75 Aligned_cols=83 Identities=12% Similarity=0.048 Sum_probs=42.1
Q ss_pred CCcEEEEecCCCC---CC--CCChh---HHHhhhHHHHHHHHHHHHhhcCCCcEEEEEeCChhhHHHHHHHHCCCCCCC-
Q 019990 81 DVNIAVMVGGFPR---KE--GMERK---DVMSKNVSIYKAQASALEKHAAPNCKVLVVANPANTNALILKEFAPSIPAK- 151 (332)
Q Consensus 81 ~aDiVi~~ag~~~---~~--~~~~~---~~~~~N~~~~~~i~~~i~~~~~~~~~viv~snp~~~~~~~~~~~~~~~~~~- 151 (332)
..|++|+.||... .+ ..+.+ ..+..|+.....+.+.+..+-.+.+++|++|+..... +.+..
T Consensus 133 ~iD~lVnnAg~~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~m~~~g~Iv~isS~~~~~---------~~~~~~ 203 (319)
T 2ptg_A 133 QIDILVHSLANGPEVTKPLLQTSRKGYLAAVSSSSYSFVSLLQHFLPLMKEGGSALALSYIASEK---------VIPGYG 203 (319)
T ss_dssp CEEEEEEEEECCSSSSSCGGGCCHHHHHHHHHHHTHHHHHHHHHHGGGEEEEEEEEEEEECC------------------
T ss_pred CCCEEEECCccCCCCCCccccCCHHHHHHHHhHhhHHHHHHHHHHHHHHhcCceEEEEecccccc---------ccCccc
Confidence 6899999998632 11 12222 3567788888788877766521235677777543211 12222
Q ss_pred cEEEeecccHHHHHHHHHHHc
Q 019990 152 NITCLTRLDHNRAMGQISERL 172 (332)
Q Consensus 152 ~i~~~t~l~~~r~~~~~a~~~ 172 (332)
..|+.+|.....+.+.++..+
T Consensus 204 ~~Y~asKaal~~l~~~la~el 224 (319)
T 2ptg_A 204 GGMSSAKAALESDCRTLAFEA 224 (319)
T ss_dssp ---------THHHHHHHHHHH
T ss_pred hhhHHHHHHHHHHHHHHHHHh
Confidence 256778877777777777664
|
| >3hwr_A 2-dehydropantoate 2-reductase; YP_299159.1, PANE/APBA family ketopantoate reductase, struct genomics, joint center for structural genomics; HET: NDP BCN; 2.15A {Ralstonia eutropha} | Back alignment and structure |
|---|
Probab=97.62 E-value=0.00043 Score=62.80 Aligned_cols=112 Identities=19% Similarity=0.267 Sum_probs=65.3
Q ss_pred CCcEEEEEcCCChhHHHHHHHHHhcccCCCCCCeEEEEEecccchhhhhhhHhhhhhhccC---CccceEEeCCHHHHhC
Q 019990 4 NPLRVLVTGAAGQIGYALVPMIARGIMLGPDQPVILHMLDIEPAAEALNGVKMELIDAAFP---LLKGVVATTDVVEACK 80 (332)
Q Consensus 4 ~~~kI~VtGaaG~IGs~l~~~L~~~~~~~~~~~~~i~l~D~~~~~~~~~~~~~dl~~~~~~---~~~~v~~~~~~~~a~~ 80 (332)
+++||+|+| +|.+|+.++..|.+.|. +|.++ .+. +.++....+-.....+ ....+....+. +++.
T Consensus 18 ~~~kI~IiG-aGa~G~~~a~~L~~~G~-------~V~l~-~~~--~~~~~i~~~g~~~~~~~~~~~~~~~~~~~~-~~~~ 85 (318)
T 3hwr_A 18 QGMKVAIMG-AGAVGCYYGGMLARAGH-------EVILI-ARP--QHVQAIEATGLRLETQSFDEQVKVSASSDP-SAVQ 85 (318)
T ss_dssp --CEEEEES-CSHHHHHHHHHHHHTTC-------EEEEE-CCH--HHHHHHHHHCEEEECSSCEEEECCEEESCG-GGGT
T ss_pred cCCcEEEEC-cCHHHHHHHHHHHHCCC-------eEEEE-EcH--hHHHHHHhCCeEEEcCCCcEEEeeeeeCCH-HHcC
Confidence 478999999 69999999999998875 78888 542 2222111100000000 11233444555 4468
Q ss_pred CCcEEEEecCCCCCCCCChhHHHhhhHHHHHHHHHHHHhhcCCCcEEEEEeCChhhHHHHHHHH
Q 019990 81 DVNIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEKHAAPNCKVLVVANPANTNALILKEF 144 (332)
Q Consensus 81 ~aDiVi~~ag~~~~~~~~~~~~~~~N~~~~~~i~~~i~~~~~~~~~viv~snp~~~~~~~~~~~ 144 (332)
++|+||++.- + .+ +.++++.++.+..++..++..+|.++... .+.+.
T Consensus 86 ~~D~vilavk----~----~~--------~~~~l~~l~~~l~~~~~iv~~~nGi~~~~-~l~~~ 132 (318)
T 3hwr_A 86 GADLVLFCVK----S----TD--------TQSAALAMKPALAKSALVLSLQNGVENAD-TLRSL 132 (318)
T ss_dssp TCSEEEECCC----G----GG--------HHHHHHHHTTTSCTTCEEEEECSSSSHHH-HHHHH
T ss_pred CCCEEEEEcc----c----cc--------HHHHHHHHHHhcCCCCEEEEeCCCCCcHH-HHHHH
Confidence 9999998741 1 11 24556666666545667777889876543 33443
|
| >3c24_A Putative oxidoreductase; YP_511008.1, structural genomics, center for structural genomics, JCSG, protein structure INI PSI-2; HET: MSE; 1.62A {Jannaschia SP} | Back alignment and structure |
|---|
Probab=97.61 E-value=0.00058 Score=60.87 Aligned_cols=66 Identities=23% Similarity=0.332 Sum_probs=45.4
Q ss_pred CCcEEEEEcCCChhHHHHHHHHHhcccCCCCCCeEEEEEecccchhhhhhhHhhhhhhccCCccceEEeCCHHHHhCCCc
Q 019990 4 NPLRVLVTGAAGQIGYALVPMIARGIMLGPDQPVILHMLDIEPAAEALNGVKMELIDAAFPLLKGVVATTDVVEACKDVN 83 (332)
Q Consensus 4 ~~~kI~VtGaaG~IGs~l~~~L~~~~~~~~~~~~~i~l~D~~~~~~~~~~~~~dl~~~~~~~~~~v~~~~~~~~a~~~aD 83 (332)
.||||+|+|++|.+|++++..|...++ +|.++|++. +.+. .+.... +.. .+..++++++|
T Consensus 10 mmm~I~iIG~tG~mG~~la~~l~~~g~-------~V~~~~r~~--~~~~----~~~~~g------~~~-~~~~~~~~~aD 69 (286)
T 3c24_A 10 GPKTVAILGAGGKMGARITRKIHDSAH-------HLAAIEIAP--EGRD----RLQGMG------IPL-TDGDGWIDEAD 69 (286)
T ss_dssp CCCEEEEETTTSHHHHHHHHHHHHSSS-------EEEEECCSH--HHHH----HHHHTT------CCC-CCSSGGGGTCS
T ss_pred cCCEEEEECCCCHHHHHHHHHHHhCCC-------EEEEEECCH--HHHH----HHHhcC------CCc-CCHHHHhcCCC
Confidence 357999999559999999999998775 899999853 2222 121111 111 13456788999
Q ss_pred EEEEec
Q 019990 84 IAVMVG 89 (332)
Q Consensus 84 iVi~~a 89 (332)
+||++.
T Consensus 70 vVi~av 75 (286)
T 3c24_A 70 VVVLAL 75 (286)
T ss_dssp EEEECS
T ss_pred EEEEcC
Confidence 999874
|
| >3c85_A Putative glutathione-regulated potassium-efflux S protein KEFB; TRKA domain; HET: AMP; 1.90A {Vibrio parahaemolyticus rimd 2210633} | Back alignment and structure |
|---|
Probab=97.61 E-value=0.0013 Score=54.38 Aligned_cols=139 Identities=12% Similarity=0.077 Sum_probs=77.6
Q ss_pred CcEEEEEcCCChhHHHHHHHHHhc-ccCCCCCCeEEEEEecccchhhhhhhHhhhhhhccC-CccceEEeCCHHHH--hC
Q 019990 5 PLRVLVTGAAGQIGYALVPMIARG-IMLGPDQPVILHMLDIEPAAEALNGVKMELIDAAFP-LLKGVVATTDVVEA--CK 80 (332)
Q Consensus 5 ~~kI~VtGaaG~IGs~l~~~L~~~-~~~~~~~~~~i~l~D~~~~~~~~~~~~~dl~~~~~~-~~~~v~~~~~~~~a--~~ 80 (332)
.++|+|+| +|.+|+.++..|... ++ +++++|.+. ++.. .+...... ...+......+.++ +.
T Consensus 39 ~~~v~IiG-~G~~G~~~a~~L~~~~g~-------~V~vid~~~--~~~~----~~~~~g~~~~~gd~~~~~~l~~~~~~~ 104 (183)
T 3c85_A 39 HAQVLILG-MGRIGTGAYDELRARYGK-------ISLGIEIRE--EAAQ----QHRSEGRNVISGDATDPDFWERILDTG 104 (183)
T ss_dssp TCSEEEEC-CSHHHHHHHHHHHHHHCS-------CEEEEESCH--HHHH----HHHHTTCCEEECCTTCHHHHHTBCSCC
T ss_pred CCcEEEEC-CCHHHHHHHHHHHhccCC-------eEEEEECCH--HHHH----HHHHCCCCEEEcCCCCHHHHHhccCCC
Confidence 45899999 699999999999887 75 799999864 2222 12211111 11121111123444 67
Q ss_pred CCcEEEEecCCCCCCCCChhHHHhhhHHHHHHHHHHHHhhcCCCcEEEEEeCChhhHHHHHHHHCCCCCCCcEEEeeccc
Q 019990 81 DVNIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEKHAAPNCKVLVVANPANTNALILKEFAPSIPAKNITCLTRLD 160 (332)
Q Consensus 81 ~aDiVi~~ag~~~~~~~~~~~~~~~N~~~~~~i~~~i~~~~~~~~~viv~snp~~~~~~~~~~~~~~~~~~~i~~~t~l~ 160 (332)
++|+||.+.+. + ..|. .++..+++.+ |...++..++..+. ...+.+. ..+.++......
T Consensus 105 ~ad~vi~~~~~------~-----~~~~----~~~~~~~~~~-~~~~ii~~~~~~~~-~~~l~~~----G~~~vi~p~~~~ 163 (183)
T 3c85_A 105 HVKLVLLAMPH------H-----QGNQ----TALEQLQRRN-YKGQIAAIAEYPDQ-LEGLLES----GVDAAFNIYSEA 163 (183)
T ss_dssp CCCEEEECCSS------H-----HHHH----HHHHHHHHTT-CCSEEEEEESSHHH-HHHHHHH----TCSEEEEHHHHH
T ss_pred CCCEEEEeCCC------h-----HHHH----HHHHHHHHHC-CCCEEEEEECCHHH-HHHHHHc----CCCEEEchHHHH
Confidence 89999986431 1 1222 3344566654 56666666653332 2233442 334455555555
Q ss_pred HHHHHHHHHHHcCCCCCC
Q 019990 161 HNRAMGQISERLKVHVSD 178 (332)
Q Consensus 161 ~~r~~~~~a~~~~v~~~~ 178 (332)
+.++...+.+.++.+...
T Consensus 164 a~~l~~~~~~~~~~~~~~ 181 (183)
T 3c85_A 164 GSGFARHVCKQLEPQFTS 181 (183)
T ss_dssp HHHHHHHHHHHHCCCCCC
T ss_pred HHHHHHHHHHhcCCcccc
Confidence 556666666667765543
|
| >2et6_A (3R)-hydroxyacyl-COA dehydrogenase; MFE-2, beta-oxidation, peroxisome, SDR, oxido; 2.22A {Candida tropicalis} | Back alignment and structure |
|---|
Probab=97.61 E-value=0.00028 Score=69.77 Aligned_cols=152 Identities=16% Similarity=0.125 Sum_probs=84.4
Q ss_pred CCcEEEEEcCCChhHHHHHHHHHhcccCCCCCCeEEEEEecccc-------hhhhhhhHhhhhhhccCCccceEEeCCH-
Q 019990 4 NPLRVLVTGAAGQIGYALVPMIARGIMLGPDQPVILHMLDIEPA-------AEALNGVKMELIDAAFPLLKGVVATTDV- 75 (332)
Q Consensus 4 ~~~kI~VtGaaG~IGs~l~~~L~~~~~~~~~~~~~i~l~D~~~~-------~~~~~~~~~dl~~~~~~~~~~v~~~~~~- 75 (332)
+.+.++||||++-||.+++..|++.|. +|++.|++.. .+.+.....++.........++....+.
T Consensus 7 ~gkvalVTGas~GIG~a~A~~la~~Ga-------~Vv~~~~~~~~~~~gr~~~~~~~~~~~i~~~g~~~~~d~~d~~~~~ 79 (604)
T 2et6_A 7 KDKVVIITGAGGGLGKYYSLEFAKLGA-------KVVVNDLGGALNGQGGNSKAADVVVDEIVKNGGVAVADYNNVLDGD 79 (604)
T ss_dssp TTCEEEETTTTSHHHHHHHHHHHHTTC-------EEEEECC-----------CHHHHHHHHHHHTTCEEEEECCCTTCHH
T ss_pred CCCEEEEeCCCcHHHHHHHHHHHHcCC-------EEEEEeCCccccccccchHHHHHHHHHHHhcCCeEEEEcCCHHHHH
Confidence 346789999999999999999999886 8888887430 0122222233322110011122212221
Q ss_pred ------HHHhCCCcEEEEecCCCCC---CCCChh---HHHhhhHHHH----HHHHHHHHhhcCCCcEEEEEeCChhhHHH
Q 019990 76 ------VEACKDVNIAVMVGGFPRK---EGMERK---DVMSKNVSIY----KAQASALEKHAAPNCKVLVVANPANTNAL 139 (332)
Q Consensus 76 ------~~a~~~aDiVi~~ag~~~~---~~~~~~---~~~~~N~~~~----~~i~~~i~~~~~~~~~viv~snp~~~~~~ 139 (332)
.+.+-..|++|+.||+.+. ...+.+ ..+..|+... +..+..+++.. .++||++|+....
T Consensus 80 ~~v~~~~~~~G~iDiLVnNAGi~~~~~~~~~~~~~~~~~~~vNl~g~~~~~~a~~p~m~~~~--~G~IVnisS~ag~--- 154 (604)
T 2et6_A 80 KIVETAVKNFGTVHVIINNAGILRDASMKKMTEKDYKLVIDVHLNGAFAVTKAAWPYFQKQK--YGRIVNTSSPAGL--- 154 (604)
T ss_dssp HHHHHHHHHHSCCCEEEECCCCCCCBCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHT--CEEEEEECCHHHH---
T ss_pred HHHHHHHHHcCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcC--CCEEEEECCHHHc---
Confidence 1224468999999997432 123333 3456676555 44555555542 4678888764321
Q ss_pred HHHHHCCCCCCCcEEEeecccHHHHHHHHHHHcC
Q 019990 140 ILKEFAPSIPAKNITCLTRLDHNRAMGQISERLK 173 (332)
Q Consensus 140 ~~~~~~~~~~~~~i~~~t~l~~~r~~~~~a~~~~ 173 (332)
. +.+....|+.+|..-..+.+.+|..+.
T Consensus 155 ----~--~~~~~~~Y~asKaal~~lt~~la~El~ 182 (604)
T 2et6_A 155 ----Y--GNFGQANYASAKSALLGFAETLAKEGA 182 (604)
T ss_dssp ----H--CCTTBHHHHHHHHHHHHHHHHHHHHHG
T ss_pred ----C--CCCCchHHHHHHHHHHHHHHHHHHHhC
Confidence 1 122222456666666666666766653
|
| >2o2s_A Enoyl-acyl carrier reductase; enoyl reductase, triclosan, rossmann fold, oxidoreductase; HET: NAD TCL; 2.60A {Toxoplasma gondii} PDB: 2o50_A 3nj8_A* | Back alignment and structure |
|---|
Probab=97.60 E-value=0.0002 Score=64.86 Aligned_cols=152 Identities=13% Similarity=0.117 Sum_probs=85.0
Q ss_pred CCcEEEEEcC--CChhHHHHHHHHHhcccCCCCCCeEEEEEecccc---------hhhhhhhHhhhhhh------cc-CC
Q 019990 4 NPLRVLVTGA--AGQIGYALVPMIARGIMLGPDQPVILHMLDIEPA---------AEALNGVKMELIDA------AF-PL 65 (332)
Q Consensus 4 ~~~kI~VtGa--aG~IGs~l~~~L~~~~~~~~~~~~~i~l~D~~~~---------~~~~~~~~~dl~~~------~~-~~ 65 (332)
+.++++|||| +|.||.+++..|++.|. +|++.|++.. .+.+... .++... .. ..
T Consensus 8 ~gk~~lVTGa~~s~GIG~aia~~la~~G~-------~Vv~~~r~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~ 79 (315)
T 2o2s_A 8 RGQTAFVAGVADSHGYGWAIAKHLASAGA-------RVALGTWPPVLGLFQKSLQSGRLDED-RKLPDGSLIEFAGVYPL 79 (315)
T ss_dssp TTCEEEEECCSSSSSHHHHHHHHHHTTTC-------EEEEEECHHHHHHHHHHHHHTTTHHH-HBCTTSCBCCCSCEEEC
T ss_pred CCCEEEEeCCCCCCChHHHHHHHHHHCCC-------EEEEEecccccchhhhhhhhhhhhhh-hhhhccccccccccccc
Confidence 4568999998 79999999999999885 8888885320 0011100 111100 00 00
Q ss_pred ----------ccceE--------EeCCHHHH-------hCCCcEEEEecCCCC---CC--CCChh---HHHhhhHHHHHH
Q 019990 66 ----------LKGVV--------ATTDVVEA-------CKDVNIAVMVGGFPR---KE--GMERK---DVMSKNVSIYKA 112 (332)
Q Consensus 66 ----------~~~v~--------~~~~~~~a-------~~~aDiVi~~ag~~~---~~--~~~~~---~~~~~N~~~~~~ 112 (332)
..|++ ...++.+. +...|++|+.||... .+ ..+.+ ..+..|+.....
T Consensus 80 d~~~~~~~~~~~Dv~~~~~~~~~d~~~v~~~~~~~~~~~g~iD~lVnnAg~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~ 159 (315)
T 2o2s_A 80 DAAFDKPEDVPQDIKDNKRYAGVDGYTIKEVAVKVKQDLGNIDILVHSLANGPEVTKPLLETSRKGYLAASSNSAYSFVS 159 (315)
T ss_dssp CTTCSSTTSSCHHHHTCGGGSSCCCCSHHHHHHHHHHHHCSEEEEEECCCCCTTTTSCGGGCCHHHHHHHHHHHTHHHHH
T ss_pred cccccccchhhhhhhcccccccCCHHHHHHHHHHHHHhcCCCCEEEECCccCCcCCCCcccCCHHHHHHHHhhhhHHHHH
Confidence 00111 01233332 236899999998642 11 12222 356778888777
Q ss_pred HHHHHHhhcCCCcEEEEEeCChhhHHHHHHHHCCCCCCC-cEEEeecccHHHHHHHHHHHc
Q 019990 113 QASALEKHAAPNCKVLVVANPANTNALILKEFAPSIPAK-NITCLTRLDHNRAMGQISERL 172 (332)
Q Consensus 113 i~~~i~~~~~~~~~viv~snp~~~~~~~~~~~~~~~~~~-~i~~~t~l~~~r~~~~~a~~~ 172 (332)
+.+++..+-.+.+++|++|+.... .+.+.. ..|+.+|.....+.+.++..+
T Consensus 160 l~~~~~~~m~~~g~Iv~isS~~~~---------~~~~~~~~~Y~asKaal~~l~~~la~el 211 (315)
T 2o2s_A 160 LLQHFGPIMNEGGSAVTLSYLAAE---------RVVPGYGGGMSSAKAALESDTRTLAWEA 211 (315)
T ss_dssp HHHHHSTTEEEEEEEEEEEEGGGT---------SCCTTCCTTHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCEEEEEeccccc---------ccCCCccHHHHHHHHHHHHHHHHHHHHh
Confidence 777776542123567777753221 122332 246777877777777777765
|
| >2hmt_A YUAA protein; RCK, KTN, KTR, KTRA, ktrab, membrane protein, ION transporter, symporter, transport protein; HET: NAI; 2.20A {Bacillus subtilis} SCOP: c.2.1.9 PDB: 2hms_A* 2hmu_A* 2hmv_A* 2hmw_A* 1lsu_A* | Back alignment and structure |
|---|
Probab=97.54 E-value=0.00024 Score=55.83 Aligned_cols=76 Identities=17% Similarity=0.274 Sum_probs=43.7
Q ss_pred CCC-CCcEEEEEcCCChhHHHHHHHHHhcccCCCCCCeEEEEEecccchhhhhhhHhhhhhhccC-CccceEEeCCHHHH
Q 019990 1 MAK-NPLRVLVTGAAGQIGYALVPMIARGIMLGPDQPVILHMLDIEPAAEALNGVKMELIDAAFP-LLKGVVATTDVVEA 78 (332)
Q Consensus 1 m~~-~~~kI~VtGaaG~IGs~l~~~L~~~~~~~~~~~~~i~l~D~~~~~~~~~~~~~dl~~~~~~-~~~~v~~~~~~~~a 78 (332)
|.+ ++++|+|+|+ |.+|+.++..|...+. +++++|.+. +... .+...... ...+......+.++
T Consensus 1 m~~~~~~~v~I~G~-G~iG~~~a~~l~~~g~-------~v~~~d~~~--~~~~----~~~~~~~~~~~~d~~~~~~l~~~ 66 (144)
T 2hmt_A 1 MGRIKNKQFAVIGL-GRFGGSIVKELHRMGH-------EVLAVDINE--EKVN----AYASYATHAVIANATEENELLSL 66 (144)
T ss_dssp -----CCSEEEECC-SHHHHHHHHHHHHTTC-------CCEEEESCH--HHHH----TTTTTCSEEEECCTTCHHHHHTT
T ss_pred CCCCcCCcEEEECC-CHHHHHHHHHHHHCCC-------EEEEEeCCH--HHHH----HHHHhCCEEEEeCCCCHHHHHhc
Confidence 543 4568999995 9999999999988775 788899753 2221 11111000 11111111223333
Q ss_pred -hCCCcEEEEecC
Q 019990 79 -CKDVNIAVMVGG 90 (332)
Q Consensus 79 -~~~aDiVi~~ag 90 (332)
+.++|+||++.+
T Consensus 67 ~~~~~d~vi~~~~ 79 (144)
T 2hmt_A 67 GIRNFEYVIVAIG 79 (144)
T ss_dssp TGGGCSEEEECCC
T ss_pred CCCCCCEEEECCC
Confidence 578999999865
|
| >3zwc_A Peroxisomal bifunctional enzyme; beta oxidation pathway, oxidoreductase, lipid metabolism, LY isomerase, peroxisome, fatty acid metabolism; HET: NAD HSC; 2.30A {Rattus norvegicus} PDB: 3zw9_A* 3zw8_A* 3zwa_A* 3zwb_A* 2x58_A* | Back alignment and structure |
|---|
Probab=97.51 E-value=0.00094 Score=67.35 Aligned_cols=104 Identities=16% Similarity=0.203 Sum_probs=68.7
Q ss_pred CcEEEEEcCCChhHHHHHHHHHhcccCCCCCCeEEEEEecccchhhhhh---hHh-hhhh----hc----cCCccceEEe
Q 019990 5 PLRVLVTGAAGQIGYALVPMIARGIMLGPDQPVILHMLDIEPAAEALNG---VKM-ELID----AA----FPLLKGVVAT 72 (332)
Q Consensus 5 ~~kI~VtGaaG~IGs~l~~~L~~~~~~~~~~~~~i~l~D~~~~~~~~~~---~~~-dl~~----~~----~~~~~~v~~~ 72 (332)
-+||+|+| +|.+|+.++..++..|+ +|+++|.+.. .+.. ... .+.. .. ......+..+
T Consensus 316 i~~v~ViG-aG~MG~gIA~~~a~aG~-------~V~l~D~~~~--~l~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~ 385 (742)
T 3zwc_A 316 VSSVGVLG-LGTMGRGIAISFARVGI-------SVVAVESDPK--QLDAAKKIITFTLEKEASRAHQNGQASAKPKLRFS 385 (742)
T ss_dssp CCEEEEEC-CSHHHHHHHHHHHTTTC-------EEEEECSSHH--HHHHHHHHHHHHHHHHHHHHHTTTCCCCCCCEEEE
T ss_pred ccEEEEEc-ccHHHHHHHHHHHhCCC-------chhcccchHh--hhhhHHHHHHHHHHHHHHhccccchhhhhhhhccc
Confidence 36999999 69999999999999886 9999998642 2211 111 1110 00 0112345555
Q ss_pred CCHHHHhCCCcEEEEecCCCCCCCCChhHHHhhhHHHHHHHHHHHHhhcCCCcEEEEEeCChh
Q 019990 73 TDVVEACKDVNIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEKHAAPNCKVLVVANPAN 135 (332)
Q Consensus 73 ~~~~~a~~~aDiVi~~ag~~~~~~~~~~~~~~~N~~~~~~i~~~i~~~~~~~~~viv~snp~~ 135 (332)
.+ .+++++||+||-.. -.|.++-+++...+.++++|++ |++||.+.
T Consensus 386 ~~-~~~l~~aDlVIEAV--------------~E~l~iK~~vf~~le~~~~~~a--IlASNTSs 431 (742)
T 3zwc_A 386 SS-TKELSTVDLVVEAV--------------FEDMNLKKKVFAELSALCKPGA--FLCTNTSA 431 (742)
T ss_dssp SC-GGGGGSCSEEEECC--------------CSCHHHHHHHHHHHHHHSCTTC--EEEECCSS
T ss_pred Cc-HHHHhhCCEEEEec--------------cccHHHHHHHHHHHhhcCCCCc--eEEecCCc
Confidence 55 46799999999652 1235666788888999886765 66787544
|
| >3llv_A Exopolyphosphatase-related protein; NAD(P)-binding, rossmann, PSI, M structural genomics; 1.70A {Archaeoglobus fulgidus} | Back alignment and structure |
|---|
Probab=97.49 E-value=0.0001 Score=58.37 Aligned_cols=76 Identities=17% Similarity=0.230 Sum_probs=44.7
Q ss_pred CCC-CCcEEEEEcCCChhHHHHHHHHHhcccCCCCCCeEEEEEecccchhhhhhhHhhhhhhccC-CccceEEeCCHHHH
Q 019990 1 MAK-NPLRVLVTGAAGQIGYALVPMIARGIMLGPDQPVILHMLDIEPAAEALNGVKMELIDAAFP-LLKGVVATTDVVEA 78 (332)
Q Consensus 1 m~~-~~~kI~VtGaaG~IGs~l~~~L~~~~~~~~~~~~~i~l~D~~~~~~~~~~~~~dl~~~~~~-~~~~v~~~~~~~~a 78 (332)
|.. ++++|+|+| +|++|++++..|.+.|+ +++++|.++ +.+. .+.+.... ...+.+....+.++
T Consensus 1 m~~~~~~~v~I~G-~G~iG~~la~~L~~~g~-------~V~~id~~~--~~~~----~~~~~~~~~~~gd~~~~~~l~~~ 66 (141)
T 3llv_A 1 MTENGRYEYIVIG-SEAAGVGLVRELTAAGK-------KVLAVDKSK--EKIE----LLEDEGFDAVIADPTDESFYRSL 66 (141)
T ss_dssp -----CCSEEEEC-CSHHHHHHHHHHHHTTC-------CEEEEESCH--HHHH----HHHHTTCEEEECCTTCHHHHHHS
T ss_pred CCCCCCCEEEEEC-CCHHHHHHHHHHHHCCC-------eEEEEECCH--HHHH----HHHHCCCcEEECCCCCHHHHHhC
Confidence 542 467899999 59999999999998876 799999853 2222 12111110 11222222223222
Q ss_pred -hCCCcEEEEecC
Q 019990 79 -CKDVNIAVMVGG 90 (332)
Q Consensus 79 -~~~aDiVi~~ag 90 (332)
+.++|+||.+.+
T Consensus 67 ~~~~~d~vi~~~~ 79 (141)
T 3llv_A 67 DLEGVSAVLITGS 79 (141)
T ss_dssp CCTTCSEEEECCS
T ss_pred CcccCCEEEEecC
Confidence 468999998753
|
| >3d1l_A Putative NADP oxidoreductase BF3122; structural genomics, PSI-2, protein structure initiative, M center for structural genomics, MCSG; 2.19A {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=97.48 E-value=0.00068 Score=59.63 Aligned_cols=66 Identities=17% Similarity=0.181 Sum_probs=46.2
Q ss_pred CcEEEEEcCCChhHHHHHHHHHhcccCCCCCCeE-EEEEecccchhhhhhhHhhhhhhccCCccceEEeCCHHHHhCCCc
Q 019990 5 PLRVLVTGAAGQIGYALVPMIARGIMLGPDQPVI-LHMLDIEPAAEALNGVKMELIDAAFPLLKGVVATTDVVEACKDVN 83 (332)
Q Consensus 5 ~~kI~VtGaaG~IGs~l~~~L~~~~~~~~~~~~~-i~l~D~~~~~~~~~~~~~dl~~~~~~~~~~v~~~~~~~~a~~~aD 83 (332)
+|||+|+| +|.+|+.++..|...++ + +.++|++. +.+.. +... ..+....++.++++++|
T Consensus 10 ~m~i~iiG-~G~mG~~~a~~l~~~g~-------~~v~~~~~~~--~~~~~----~~~~-----~g~~~~~~~~~~~~~~D 70 (266)
T 3d1l_A 10 DTPIVLIG-AGNLATNLAKALYRKGF-------RIVQVYSRTE--ESARE----LAQK-----VEAEYTTDLAEVNPYAK 70 (266)
T ss_dssp GCCEEEEC-CSHHHHHHHHHHHHHTC-------CEEEEECSSH--HHHHH----HHHH-----TTCEEESCGGGSCSCCS
T ss_pred CCeEEEEc-CCHHHHHHHHHHHHCCC-------eEEEEEeCCH--HHHHH----HHHH-----cCCceeCCHHHHhcCCC
Confidence 57999999 69999999999988775 5 88999853 22221 2111 01333456667788999
Q ss_pred EEEEec
Q 019990 84 IAVMVG 89 (332)
Q Consensus 84 iVi~~a 89 (332)
+||++.
T Consensus 71 vvi~av 76 (266)
T 3d1l_A 71 LYIVSL 76 (266)
T ss_dssp EEEECC
T ss_pred EEEEec
Confidence 999873
|
| >3pef_A 6-phosphogluconate dehydrogenase, NAD-binding; gamma-hydroxybutyrate dehydrogenase, succinic semialdehyde R geobacter metallireducens; HET: NAP; 2.07A {Geobacter metallireducens} | Back alignment and structure |
|---|
Probab=97.48 E-value=0.00052 Score=61.20 Aligned_cols=65 Identities=15% Similarity=0.222 Sum_probs=48.7
Q ss_pred CcEEEEEcCCChhHHHHHHHHHhcccCCCCCCeEEEEEecccchhhhhhhHhhhhhhccCCccceEEeCCHHHHhCCCcE
Q 019990 5 PLRVLVTGAAGQIGYALVPMIARGIMLGPDQPVILHMLDIEPAAEALNGVKMELIDAAFPLLKGVVATTDVVEACKDVNI 84 (332)
Q Consensus 5 ~~kI~VtGaaG~IGs~l~~~L~~~~~~~~~~~~~i~l~D~~~~~~~~~~~~~dl~~~~~~~~~~v~~~~~~~~a~~~aDi 84 (332)
+|||+|+| +|.+|+.++..|...|+ +|.++|++. ++.. .+.+. .+....++.++++++|+
T Consensus 1 s~~i~iIG-~G~mG~~~a~~l~~~G~-------~V~~~dr~~--~~~~----~~~~~------g~~~~~~~~~~~~~aDv 60 (287)
T 3pef_A 1 SQKFGFIG-LGIMGSAMAKNLVKAGC-------SVTIWNRSP--EKAE----ELAAL------GAERAATPCEVVESCPV 60 (287)
T ss_dssp CCEEEEEC-CSHHHHHHHHHHHHTTC-------EEEEECSSG--GGGH----HHHHT------TCEECSSHHHHHHHCSE
T ss_pred CCEEEEEe-ecHHHHHHHHHHHHCCC-------eEEEEcCCH--HHHH----HHHHC------CCeecCCHHHHHhcCCE
Confidence 36899999 79999999999998875 899999864 2222 12211 24445678888899999
Q ss_pred EEEec
Q 019990 85 AVMVG 89 (332)
Q Consensus 85 Vi~~a 89 (332)
||++.
T Consensus 61 vi~~v 65 (287)
T 3pef_A 61 TFAML 65 (287)
T ss_dssp EEECC
T ss_pred EEEEc
Confidence 99874
|
| >1bg6_A N-(1-D-carboxylethyl)-L-norvaline dehydrogenase; L) stereospecific opine dehydrogenase, oxidoreductase; 1.80A {Arthrobacter SP} SCOP: a.100.1.5 c.2.1.6 | Back alignment and structure |
|---|
Probab=97.47 E-value=0.0008 Score=61.69 Aligned_cols=75 Identities=19% Similarity=0.156 Sum_probs=47.9
Q ss_pred CCcEEEEEcCCChhHHHHHHHHHhcccCCCCCCeEEEEEecccchhhhhhhHhhhhhhcc-----CCccce-EEeCCHHH
Q 019990 4 NPLRVLVTGAAGQIGYALVPMIARGIMLGPDQPVILHMLDIEPAAEALNGVKMELIDAAF-----PLLKGV-VATTDVVE 77 (332)
Q Consensus 4 ~~~kI~VtGaaG~IGs~l~~~L~~~~~~~~~~~~~i~l~D~~~~~~~~~~~~~dl~~~~~-----~~~~~v-~~~~~~~~ 77 (332)
++|||+|+| +|.+|+.++..|.+.++ +|.++|++. +.+....... .... .....+ ....+..+
T Consensus 3 ~~mki~iiG-~G~~G~~~a~~L~~~g~-------~V~~~~r~~--~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~ 71 (359)
T 1bg6_A 3 ESKTYAVLG-LGNGGHAFAAYLALKGQ-------SVLAWDIDA--QRIKEIQDRG-AIIAEGPGLAGTAHPDLLTSDIGL 71 (359)
T ss_dssp -CCEEEEEC-CSHHHHHHHHHHHHTTC-------EEEEECSCH--HHHHHHHHHT-SEEEESSSCCEEECCSEEESCHHH
T ss_pred CcCeEEEEC-CCHHHHHHHHHHHhCCC-------EEEEEeCCH--HHHHHHHhcC-CeEEeccccccccccceecCCHHH
Confidence 457999999 69999999999988775 899999853 2222111110 0000 000112 24457777
Q ss_pred HhCCCcEEEEec
Q 019990 78 ACKDVNIAVMVG 89 (332)
Q Consensus 78 a~~~aDiVi~~a 89 (332)
+++++|+||++.
T Consensus 72 ~~~~~D~vi~~v 83 (359)
T 1bg6_A 72 AVKDADVILIVV 83 (359)
T ss_dssp HHTTCSEEEECS
T ss_pred HHhcCCEEEEeC
Confidence 789999999975
|
| >1x0v_A GPD-C, GPDH-C, glycerol-3-phosphate dehydrogenase [NAD+], cytoplasmic; two independent domains, GXGXXG motif, oxidoreductase; 2.30A {Homo sapiens} PDB: 1x0x_A* 1wpq_A* 2pla_A* | Back alignment and structure |
|---|
Probab=97.47 E-value=0.00076 Score=61.88 Aligned_cols=112 Identities=19% Similarity=0.218 Sum_probs=63.2
Q ss_pred CcEEEEEcCCChhHHHHHHHHHhcccCCCCCCeEEEEEecccchh---hhhhhHhhhhhhc----cCCccceEEeCCHHH
Q 019990 5 PLRVLVTGAAGQIGYALVPMIARGIMLGPDQPVILHMLDIEPAAE---ALNGVKMELIDAA----FPLLKGVVATTDVVE 77 (332)
Q Consensus 5 ~~kI~VtGaaG~IGs~l~~~L~~~~~~~~~~~~~i~l~D~~~~~~---~~~~~~~dl~~~~----~~~~~~v~~~~~~~~ 77 (332)
+|||+|+| +|.+|+.++..|.+.+.....-..+|.++|++.... ............. .....++....+..+
T Consensus 8 ~mkI~iIG-~G~mG~~~a~~l~~~g~~~~~~~~~V~~~~r~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (354)
T 1x0v_A 8 SKKVCIVG-SGNWGSAIAKIVGGNAAQLAQFDPRVTMWVFEEDIGGKKLTEIINTQHENVKYLPGHKLPPNVVAVPDVVQ 86 (354)
T ss_dssp CEEEEEEC-CSHHHHHHHHHHHHHHHHCTTEEEEEEEECCCCBSSSSBHHHHHHHHSCCTTTSTTCCCCTTEEEESSHHH
T ss_pred CCeEEEEC-CCHHHHHHHHHHHhcCCcccCCCCeEEEEEcChhhhhhHHHHHHHhcCcccccCCcccCccCeEEEcCHHH
Confidence 47999999 799999999999887610000002899999864200 1111110000000 001124566677778
Q ss_pred HhCCCcEEEEecCCCCCCCCChhHHHhhhHHHHHHHHHHHHhhcCCCcEEEEEeCC
Q 019990 78 ACKDVNIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEKHAAPNCKVLVVANP 133 (332)
Q Consensus 78 a~~~aDiVi~~ag~~~~~~~~~~~~~~~N~~~~~~i~~~i~~~~~~~~~viv~snp 133 (332)
+++++|+||++.- + . .+.++++.+..+..++..++..+|.
T Consensus 87 ~~~~aD~Vilav~----~----~--------~~~~v~~~i~~~l~~~~ivv~~~~G 126 (354)
T 1x0v_A 87 AAEDADILIFVVP----H----Q--------FIGKICDQLKGHLKANATGISLIKG 126 (354)
T ss_dssp HHTTCSEEEECCC----G----G--------GHHHHHHHHTTCSCTTCEEEECCCC
T ss_pred HHcCCCEEEEeCC----H----H--------HHHHHHHHHHhhCCCCCEEEEECCc
Confidence 8899999998741 1 0 1244555666654455555656653
|
| >1zcj_A Peroxisomal bifunctional enzyme; peroxisomal multifunctional enzyme type 1, L-bifunction enzyme, MFE-1, fatty acid beta oxidation; 1.90A {Rattus norvegicus} | Back alignment and structure |
|---|
Probab=97.46 E-value=0.00095 Score=63.83 Aligned_cols=99 Identities=16% Similarity=0.150 Sum_probs=59.4
Q ss_pred CCcEEEEEcCCChhHHHHHHHHHhcccCCCCCCeEEEEEecccchhhhhhhHhhhh--------hhcc-C---CccceEE
Q 019990 4 NPLRVLVTGAAGQIGYALVPMIARGIMLGPDQPVILHMLDIEPAAEALNGVKMELI--------DAAF-P---LLKGVVA 71 (332)
Q Consensus 4 ~~~kI~VtGaaG~IGs~l~~~L~~~~~~~~~~~~~i~l~D~~~~~~~~~~~~~dl~--------~~~~-~---~~~~v~~ 71 (332)
+++||+|+| +|.+|+.++..|+..|+ +|+++|++. +.+......+. .... . .......
T Consensus 36 ~~~kV~VIG-aG~MG~~iA~~la~~G~-------~V~l~D~~~--~~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i 105 (463)
T 1zcj_A 36 PVSSVGVLG-LGTMGRGIAISFARVGI-------SVVAVESDP--KQLDAAKKIITFTLEKEASRAHQNGQASAKPKLRF 105 (463)
T ss_dssp CCCEEEEEC-CSHHHHHHHHHHHTTTC-------EEEEECSSH--HHHHHHHHHHHHHHHHHHHHHHHTTCCCCCCCEEE
T ss_pred CCCEEEEEC-cCHHHHHHHHHHHhCCC-------eEEEEECCH--HHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhhh
Confidence 357899999 69999999999998886 899999864 22221111110 0000 0 0111233
Q ss_pred eCCHHHHhCCCcEEEEecCCCCCCCCChhHHHhhhHHHHHHHHHHHHhhcCCCcEE
Q 019990 72 TTDVVEACKDVNIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEKHAAPNCKV 127 (332)
Q Consensus 72 ~~~~~~a~~~aDiVi~~ag~~~~~~~~~~~~~~~N~~~~~~i~~~i~~~~~~~~~v 127 (332)
++++ +++++||+||.+.. . +....+.+...+..+.+++..+
T Consensus 106 ~~~~-~~~~~aDlVIeaVp------e--------~~~~k~~v~~~l~~~~~~~~ii 146 (463)
T 1zcj_A 106 SSST-KELSTVDLVVEAVF------E--------DMNLKKKVFAELSALCKPGAFL 146 (463)
T ss_dssp ESCG-GGGTTCSEEEECCC------S--------CHHHHHHHHHHHHHHSCTTCEE
T ss_pred cCCH-HHHCCCCEEEEcCC------C--------CHHHHHHHHHHHHhhCCCCeEE
Confidence 5565 67899999999752 1 1233345555666666556543
|
| >3tri_A Pyrroline-5-carboxylate reductase; amino acid biosynthesis, oxidoreductase; HET: NAP; 2.50A {Coxiella burnetii} | Back alignment and structure |
|---|
Probab=97.46 E-value=0.00083 Score=59.82 Aligned_cols=70 Identities=16% Similarity=0.202 Sum_probs=49.5
Q ss_pred CCcEEEEEcCCChhHHHHHHHHHhcccCCCCCCeEEEEEecccchhhhhhhHhhhhhhccCCccceEEeCCHHHHhCCCc
Q 019990 4 NPLRVLVTGAAGQIGYALVPMIARGIMLGPDQPVILHMLDIEPAAEALNGVKMELIDAAFPLLKGVVATTDVVEACKDVN 83 (332)
Q Consensus 4 ~~~kI~VtGaaG~IGs~l~~~L~~~~~~~~~~~~~i~l~D~~~~~~~~~~~~~dl~~~~~~~~~~v~~~~~~~~a~~~aD 83 (332)
+++||+|+| +|.+|++++..|...++- ..+|.++|++. +++. .+... ..+....+..++++++|
T Consensus 2 ~~~~I~iIG-~G~mG~aia~~l~~~g~~----~~~V~v~dr~~--~~~~----~l~~~-----~gi~~~~~~~~~~~~aD 65 (280)
T 3tri_A 2 NTSNITFIG-GGNMARNIVVGLIANGYD----PNRICVTNRSL--DKLD----FFKEK-----CGVHTTQDNRQGALNAD 65 (280)
T ss_dssp CCSCEEEES-CSHHHHHHHHHHHHTTCC----GGGEEEECSSS--HHHH----HHHHT-----TCCEEESCHHHHHSSCS
T ss_pred CCCEEEEEc-ccHHHHHHHHHHHHCCCC----CCeEEEEeCCH--HHHH----HHHHH-----cCCEEeCChHHHHhcCC
Confidence 357899999 699999999999987741 13799999864 2222 12211 12444567788899999
Q ss_pred EEEEec
Q 019990 84 IAVMVG 89 (332)
Q Consensus 84 iVi~~a 89 (332)
+||++.
T Consensus 66 vVilav 71 (280)
T 3tri_A 66 VVVLAV 71 (280)
T ss_dssp EEEECS
T ss_pred eEEEEe
Confidence 999875
|
| >3i83_A 2-dehydropantoate 2-reductase; structural genomics, oxidoreductase, NADP, pantothenate BIOS PSI-2, protein structure initiative; 1.90A {Methylococcus capsulatus} | Back alignment and structure |
|---|
Probab=97.45 E-value=0.00055 Score=62.15 Aligned_cols=124 Identities=14% Similarity=0.229 Sum_probs=67.3
Q ss_pred cEEEEEcCCChhHHHHHHHHHhcccCCCCCCeEEEEEecccchhhhhhhHhhhhhhccC-C-ccceEEeCCHHHHhCCCc
Q 019990 6 LRVLVTGAAGQIGYALVPMIARGIMLGPDQPVILHMLDIEPAAEALNGVKMELIDAAFP-L-LKGVVATTDVVEACKDVN 83 (332)
Q Consensus 6 ~kI~VtGaaG~IGs~l~~~L~~~~~~~~~~~~~i~l~D~~~~~~~~~~~~~dl~~~~~~-~-~~~v~~~~~~~~a~~~aD 83 (332)
|||+|+| +|.+|+.++..|.+.+. +|.+++++. .+.+......+...... . ...+....+..++.+++|
T Consensus 3 mkI~IiG-aGaiG~~~a~~L~~~g~-------~V~~~~r~~-~~~i~~~Gl~~~~~~~g~~~~~~~~~~~~~~~~~~~~D 73 (320)
T 3i83_A 3 LNILVIG-TGAIGSFYGALLAKTGH-------CVSVVSRSD-YETVKAKGIRIRSATLGDYTFRPAAVVRSAAELETKPD 73 (320)
T ss_dssp CEEEEES-CCHHHHHHHHHHHHTTC-------EEEEECSTT-HHHHHHHCEEEEETTTCCEEECCSCEESCGGGCSSCCS
T ss_pred CEEEEEC-cCHHHHHHHHHHHhCCC-------eEEEEeCCh-HHHHHhCCcEEeecCCCcEEEeeeeeECCHHHcCCCCC
Confidence 7899999 69999999999998775 899999853 11111110001000000 0 012333455555445899
Q ss_pred EEEEecCCCCCCCCChhHHHhhhHHHHHHHHHHHHhhcCCCcEEEEEeCChhhHHHHHHHHCCCCCCCcE-EEeec
Q 019990 84 IAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEKHAAPNCKVLVVANPANTNALILKEFAPSIPAKNI-TCLTR 158 (332)
Q Consensus 84 iVi~~ag~~~~~~~~~~~~~~~N~~~~~~i~~~i~~~~~~~~~viv~snp~~~~~~~~~~~~~~~~~~~i-~~~t~ 158 (332)
+||++.-.. .. .++++.++.+-.++..++.+.|.++.... +.+. ++..++ .|.+.
T Consensus 74 lVilavK~~----~~------------~~~l~~l~~~l~~~t~Iv~~~nGi~~~~~-l~~~---~~~~~vl~g~~~ 129 (320)
T 3i83_A 74 CTLLCIKVV----EG------------ADRVGLLRDAVAPDTGIVLISNGIDIEPE-VAAA---FPDNEVISGLAF 129 (320)
T ss_dssp EEEECCCCC----TT------------CCHHHHHTTSCCTTCEEEEECSSSSCSHH-HHHH---STTSCEEEEEEE
T ss_pred EEEEecCCC----Ch------------HHHHHHHHhhcCCCCEEEEeCCCCChHHH-HHHH---CCCCcEEEEEEE
Confidence 999874211 11 12234444443355667778887654322 3333 444554 34343
|
| >3qsg_A NAD-binding phosphogluconate dehydrogenase-like P; structural genomics, PSI-biology, midwest center for structu genomics; 1.90A {Alicyclobacillus acidocaldarius subsp} | Back alignment and structure |
|---|
Probab=97.45 E-value=0.00088 Score=60.61 Aligned_cols=70 Identities=14% Similarity=0.186 Sum_probs=47.5
Q ss_pred CCCcEEEEEcCCChhHHHHHHHHHhcccCCCCCCeEEEEEecccchhhhhhhHhhhhhhccCCccceEEeCCHHHHhCCC
Q 019990 3 KNPLRVLVTGAAGQIGYALVPMIARGIMLGPDQPVILHMLDIEPAAEALNGVKMELIDAAFPLLKGVVATTDVVEACKDV 82 (332)
Q Consensus 3 ~~~~kI~VtGaaG~IGs~l~~~L~~~~~~~~~~~~~i~l~D~~~~~~~~~~~~~dl~~~~~~~~~~v~~~~~~~~a~~~a 82 (332)
.++|||+|+| +|.+|+.++..|...|+ .+|.++|++.+.+... .+... .+....+..++++++
T Consensus 22 ~~~~~I~iIG-~G~mG~~~A~~L~~~G~------~~V~~~dr~~~~~~~~----~~~~~------g~~~~~~~~e~~~~a 84 (312)
T 3qsg_A 22 SNAMKLGFIG-FGEAASAIASGLRQAGA------IDMAAYDAASAESWRP----RAEEL------GVSCKASVAEVAGEC 84 (312)
T ss_dssp ---CEEEEEC-CSHHHHHHHHHHHHHSC------CEEEEECSSCHHHHHH----HHHHT------TCEECSCHHHHHHHC
T ss_pred CCCCEEEEEC-ccHHHHHHHHHHHHCCC------CeEEEEcCCCCHHHHH----HHHHC------CCEEeCCHHHHHhcC
Confidence 3578999999 79999999999998774 1799999852011111 12111 234456777888999
Q ss_pred cEEEEec
Q 019990 83 NIAVMVG 89 (332)
Q Consensus 83 DiVi~~a 89 (332)
|+||.+.
T Consensus 85 DvVi~~v 91 (312)
T 3qsg_A 85 DVIFSLV 91 (312)
T ss_dssp SEEEECS
T ss_pred CEEEEec
Confidence 9999874
|
| >2ew2_A 2-dehydropantoate 2-reductase, putative; alpha-structure, alpha-beta structure, structural genomics, protein structure initiative; HET: MSE; 2.00A {Enterococcus faecalis} | Back alignment and structure |
|---|
Probab=97.44 E-value=0.0008 Score=60.39 Aligned_cols=103 Identities=15% Similarity=0.255 Sum_probs=58.7
Q ss_pred CcEEEEEcCCChhHHHHHHHHHhcccCCCCCCeEEEEEecccchhhhhhhHhhhhhhccCC-----ccceEEeC--CHHH
Q 019990 5 PLRVLVTGAAGQIGYALVPMIARGIMLGPDQPVILHMLDIEPAAEALNGVKMELIDAAFPL-----LKGVVATT--DVVE 77 (332)
Q Consensus 5 ~~kI~VtGaaG~IGs~l~~~L~~~~~~~~~~~~~i~l~D~~~~~~~~~~~~~dl~~~~~~~-----~~~v~~~~--~~~~ 77 (332)
||||+|+| +|.+|+.++..|.+.++ +|.++|++. +.+...... ...... ..++...+ +..+
T Consensus 3 ~m~i~iiG-~G~~G~~~a~~l~~~g~-------~V~~~~r~~--~~~~~~~~~--g~~~~~~~~~~~~~~~~~~~~~~~~ 70 (316)
T 2ew2_A 3 AMKIAIAG-AGAMGSRLGIMLHQGGN-------DVTLIDQWP--AHIEAIRKN--GLIADFNGEEVVANLPIFSPEEIDH 70 (316)
T ss_dssp -CEEEEEC-CSHHHHHHHHHHHHTTC-------EEEEECSCH--HHHHHHHHH--CEEEEETTEEEEECCCEECGGGCCT
T ss_pred CCeEEEEC-cCHHHHHHHHHHHhCCC-------cEEEEECCH--HHHHHHHhC--CEEEEeCCCeeEecceeecchhhcc
Confidence 57999999 69999999999998775 899999853 222211110 000000 00111112 1222
Q ss_pred HhCCCcEEEEecCCCCCCCCChhHHHhhhHHHHHHHHHHHHhhcCCCcEEEEEeCChh
Q 019990 78 ACKDVNIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEKHAAPNCKVLVVANPAN 135 (332)
Q Consensus 78 a~~~aDiVi~~ag~~~~~~~~~~~~~~~N~~~~~~i~~~i~~~~~~~~~viv~snp~~ 135 (332)
+++++|+||++.. .. .+.++++.+..+..++..++..+|...
T Consensus 71 ~~~~~d~vi~~v~--------~~--------~~~~v~~~l~~~l~~~~~iv~~~~g~~ 112 (316)
T 2ew2_A 71 QNEQVDLIIALTK--------AQ--------QLDAMFKAIQPMITEKTYVLCLLNGLG 112 (316)
T ss_dssp TSCCCSEEEECSC--------HH--------HHHHHHHHHGGGCCTTCEEEECCSSSC
T ss_pred cCCCCCEEEEEec--------cc--------cHHHHHHHHHHhcCCCCEEEEecCCCC
Confidence 3458999998741 11 124555666665445556666677654
|
| >3qha_A Putative oxidoreductase; seattle structural genomics center for infectious disease, S mycobacterium avium 104, rossmann fold; 2.25A {Mycobacterium avium} | Back alignment and structure |
|---|
Probab=97.44 E-value=0.00065 Score=60.95 Aligned_cols=64 Identities=17% Similarity=0.262 Sum_probs=47.5
Q ss_pred CcEEEEEcCCChhHHHHHHHHHhcccCCCCCCeEEEEEecccchhhhhhhHhhhhhhccCCccceEEeCCHHHHhCCCcE
Q 019990 5 PLRVLVTGAAGQIGYALVPMIARGIMLGPDQPVILHMLDIEPAAEALNGVKMELIDAAFPLLKGVVATTDVVEACKDVNI 84 (332)
Q Consensus 5 ~~kI~VtGaaG~IGs~l~~~L~~~~~~~~~~~~~i~l~D~~~~~~~~~~~~~dl~~~~~~~~~~v~~~~~~~~a~~~aDi 84 (332)
++||+|+| +|.+|..++..|...|+ +|.++|++.. +.. .+.+. .+....+..++++ +|+
T Consensus 15 ~~~I~vIG-~G~mG~~~A~~l~~~G~-------~V~~~dr~~~--~~~----~~~~~------g~~~~~~~~~~~~-aDv 73 (296)
T 3qha_A 15 QLKLGYIG-LGNMGAPMATRMTEWPG-------GVTVYDIRIE--AMT----PLAEA------GATLADSVADVAA-ADL 73 (296)
T ss_dssp CCCEEEEC-CSTTHHHHHHHHTTSTT-------CEEEECSSTT--TSH----HHHHT------TCEECSSHHHHTT-SSE
T ss_pred CCeEEEEC-cCHHHHHHHHHHHHCCC-------eEEEEeCCHH--HHH----HHHHC------CCEEcCCHHHHHh-CCE
Confidence 46899999 79999999999998876 7999998642 222 12111 2444567888888 999
Q ss_pred EEEec
Q 019990 85 AVMVG 89 (332)
Q Consensus 85 Vi~~a 89 (332)
||++.
T Consensus 74 vi~~v 78 (296)
T 3qha_A 74 IHITV 78 (296)
T ss_dssp EEECC
T ss_pred EEEEC
Confidence 99874
|
| >1yj8_A Glycerol-3-phosphate dehydrogenase; SGPP, structural genomics, PSI; 2.85A {Plasmodium falciparum} | Back alignment and structure |
|---|
Probab=97.41 E-value=0.00092 Score=62.03 Aligned_cols=111 Identities=13% Similarity=0.193 Sum_probs=63.2
Q ss_pred CcEEEEEcCCChhHHHHHHHHHhcccCCCCCCeEEEEEecccchhhhhhhHhhhhhh--c------cCCccceEEeCCHH
Q 019990 5 PLRVLVTGAAGQIGYALVPMIARGIMLGPDQPVILHMLDIEPAAEALNGVKMELIDA--A------FPLLKGVVATTDVV 76 (332)
Q Consensus 5 ~~kI~VtGaaG~IGs~l~~~L~~~~~~~~~~~~~i~l~D~~~~~~~~~~~~~dl~~~--~------~~~~~~v~~~~~~~ 76 (332)
|+||+|+| +|.+|+.++..|.+.|...+.-..+|.++|++...+ .......+... . .....++....+..
T Consensus 21 ~~kI~iIG-aG~mG~alA~~L~~~G~~~~~~~~~V~~~~r~~~~~-~~~~~~~l~~~~~~~~~~~~~~~~~~i~~~~~~~ 98 (375)
T 1yj8_A 21 PLKISILG-SGNWASAISKVVGTNAKNNYLFENEVRMWIRDEFVN-GERMVDIINNKHENTKYLKGVPLPHNIVAHSDLA 98 (375)
T ss_dssp CBCEEEEC-CSHHHHHHHHHHHHHHHHCTTBCSCEEEECCSCC----CCHHHHHHHHCBCTTTSTTCBCCTTEEEESSTH
T ss_pred CCEEEEEC-cCHHHHHHHHHHHHcCCccCCCCCeEEEEECChhhh-hHHHHHHHHhcCcccccCCcccCcCCeEEECCHH
Confidence 56899999 799999999999887610000001799999864200 00011112110 0 01113466667777
Q ss_pred HHhCCCcEEEEecCCCCCCCCChhHHHhhhHHHHHHHHHHHHh----hcCCCcEEEEEeCC
Q 019990 77 EACKDVNIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEK----HAAPNCKVLVVANP 133 (332)
Q Consensus 77 ~a~~~aDiVi~~ag~~~~~~~~~~~~~~~N~~~~~~i~~~i~~----~~~~~~~viv~snp 133 (332)
++++++|+||++.. . ..+.++++.+.. +..++..++..+|.
T Consensus 99 ea~~~aDvVilav~--------~--------~~~~~vl~~i~~~~~~~l~~~~ivvs~~~G 143 (375)
T 1yj8_A 99 SVINDADLLIFIVP--------C--------QYLESVLASIKESESIKIASHAKAISLTKG 143 (375)
T ss_dssp HHHTTCSEEEECCC--------H--------HHHHHHHHHHTC---CCCCTTCEEEECCCS
T ss_pred HHHcCCCEEEEcCC--------H--------HHHHHHHHHHhhhhhccCCCCCEEEEeCCc
Confidence 88899999998731 1 124455666665 44355555655553
|
| >1evy_A Glycerol-3-phosphate dehydrogenase; rossmann fold, oxidoreductase; HET: MYS; 1.75A {Leishmania mexicana} SCOP: a.100.1.6 c.2.1.6 PDB: 1evz_A* 1jdj_A* 1m66_A* 1m67_A* 1n1e_A* 1n1g_A* | Back alignment and structure |
|---|
Probab=97.38 E-value=0.00062 Score=62.90 Aligned_cols=74 Identities=20% Similarity=0.266 Sum_probs=48.7
Q ss_pred cEEEEEcCCChhHHHHHHHHHhcccCCCCCCeEEEEEecccchhhhhhhHhhhhhhc----cCCccceEEeCCHHHHhCC
Q 019990 6 LRVLVTGAAGQIGYALVPMIARGIMLGPDQPVILHMLDIEPAAEALNGVKMELIDAA----FPLLKGVVATTDVVEACKD 81 (332)
Q Consensus 6 ~kI~VtGaaG~IGs~l~~~L~~~~~~~~~~~~~i~l~D~~~~~~~~~~~~~dl~~~~----~~~~~~v~~~~~~~~a~~~ 81 (332)
+||+|+| +|.+|+.++..|.+.|+ +|.++|++. +.+........... .....++....+..+++++
T Consensus 16 ~kI~iIG-~G~mG~~la~~L~~~G~-------~V~~~~r~~--~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (366)
T 1evy_A 16 NKAVVFG-SGAFGTALAMVLSKKCR-------EVCVWHMNE--EEVRLVNEKRENVLFLKGVQLASNITFTSDVEKAYNG 85 (366)
T ss_dssp EEEEEEC-CSHHHHHHHHHHTTTEE-------EEEEECSCH--HHHHHHHHHTBCTTTSTTCBCCTTEEEESCHHHHHTT
T ss_pred CeEEEEC-CCHHHHHHHHHHHhCCC-------EEEEEECCH--HHHHHHHHcCcccccccccccccceeeeCCHHHHHcC
Confidence 3899999 69999999999988775 899999853 22221111100000 0011245556677788899
Q ss_pred CcEEEEec
Q 019990 82 VNIAVMVG 89 (332)
Q Consensus 82 aDiVi~~a 89 (332)
+|+||++.
T Consensus 86 aDvVilav 93 (366)
T 1evy_A 86 AEIILFVI 93 (366)
T ss_dssp CSSEEECC
T ss_pred CCEEEECC
Confidence 99999874
|
| >4huj_A Uncharacterized protein; PSI-biology, nysgrc, structural genomics, NEW YORK structura genomics research consortium, dinucleotide-binding; 1.77A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=97.38 E-value=0.00015 Score=62.20 Aligned_cols=67 Identities=16% Similarity=0.203 Sum_probs=45.4
Q ss_pred CCcEEEEEcCCChhHHHHHHHHHhcccCCCCCCeEEEE-EecccchhhhhhhHhhhhhhccCCccceEEeCCHHHHhCCC
Q 019990 4 NPLRVLVTGAAGQIGYALVPMIARGIMLGPDQPVILHM-LDIEPAAEALNGVKMELIDAAFPLLKGVVATTDVVEACKDV 82 (332)
Q Consensus 4 ~~~kI~VtGaaG~IGs~l~~~L~~~~~~~~~~~~~i~l-~D~~~~~~~~~~~~~dl~~~~~~~~~~v~~~~~~~~a~~~a 82 (332)
+||||+|+| +|.+|++++..|.+.++ ++.+ +|++. +++.....++. ... ..+..++++++
T Consensus 22 ~mmkI~IIG-~G~mG~~la~~l~~~g~-------~V~~v~~r~~--~~~~~l~~~~g-------~~~--~~~~~~~~~~a 82 (220)
T 4huj_A 22 SMTTYAIIG-AGAIGSALAERFTAAQI-------PAIIANSRGP--ASLSSVTDRFG-------ASV--KAVELKDALQA 82 (220)
T ss_dssp GSCCEEEEE-CHHHHHHHHHHHHHTTC-------CEEEECTTCG--GGGHHHHHHHT-------TTE--EECCHHHHTTS
T ss_pred cCCEEEEEC-CCHHHHHHHHHHHhCCC-------EEEEEECCCH--HHHHHHHHHhC-------CCc--ccChHHHHhcC
Confidence 468999999 79999999999998775 6777 88753 23332222111 011 12334568999
Q ss_pred cEEEEec
Q 019990 83 NIAVMVG 89 (332)
Q Consensus 83 DiVi~~a 89 (332)
|+||++.
T Consensus 83 DvVilav 89 (220)
T 4huj_A 83 DVVILAV 89 (220)
T ss_dssp SEEEEES
T ss_pred CEEEEeC
Confidence 9999874
|
| >2rcy_A Pyrroline carboxylate reductase; malaria, structural genomics, pyrroline reductase, oxidoredu structural genomics consortium, SGC; HET: NAP; 2.30A {Plasmodium falciparum} | Back alignment and structure |
|---|
Probab=97.37 E-value=0.0006 Score=59.75 Aligned_cols=93 Identities=14% Similarity=0.095 Sum_probs=59.0
Q ss_pred CcEEEEEcCCChhHHHHHHHHHhcccCCCCCCeEEEEEecccchhhhhhhHhhhhhhccCCccceEEeCCHHHHhCCCcE
Q 019990 5 PLRVLVTGAAGQIGYALVPMIARGIMLGPDQPVILHMLDIEPAAEALNGVKMELIDAAFPLLKGVVATTDVVEACKDVNI 84 (332)
Q Consensus 5 ~~kI~VtGaaG~IGs~l~~~L~~~~~~~~~~~~~i~l~D~~~~~~~~~~~~~dl~~~~~~~~~~v~~~~~~~~a~~~aDi 84 (332)
+|||+|+| +|.+|+.++..|...+... ..+|.++|++.. . . .+....+..++++++|+
T Consensus 4 ~m~i~iiG-~G~mG~~~a~~l~~~g~~~---~~~v~~~~~~~~--~---------~-------g~~~~~~~~~~~~~~D~ 61 (262)
T 2rcy_A 4 NIKLGFMG-LGQMGSALAHGIANANIIK---KENLFYYGPSKK--N---------T-------TLNYMSSNEELARHCDI 61 (262)
T ss_dssp SSCEEEEC-CSHHHHHHHHHHHHHTSSC---GGGEEEECSSCC--S---------S-------SSEECSCHHHHHHHCSE
T ss_pred CCEEEEEC-cCHHHHHHHHHHHHCCCCC---CCeEEEEeCCcc--c---------C-------ceEEeCCHHHHHhcCCE
Confidence 57899999 6999999999998876211 027899998642 1 0 12334566677889999
Q ss_pred EEEecCCCCCCCCChhHHHhhhHHHHHHHHHHHHhhcCCCcEEEEEeCChhh
Q 019990 85 AVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEKHAAPNCKVLVVANPANT 136 (332)
Q Consensus 85 Vi~~ag~~~~~~~~~~~~~~~N~~~~~~i~~~i~~~~~~~~~viv~snp~~~ 136 (332)
||++.. + .. +.++++.+..+. ++..++..+|.+..
T Consensus 62 vi~~v~----~-~~-----------~~~v~~~l~~~l-~~~~vv~~~~gi~~ 96 (262)
T 2rcy_A 62 IVCAVK----P-DI-----------AGSVLNNIKPYL-SSKLLISICGGLNI 96 (262)
T ss_dssp EEECSC----T-TT-----------HHHHHHHSGGGC-TTCEEEECCSSCCH
T ss_pred EEEEeC----H-HH-----------HHHHHHHHHHhc-CCCEEEEECCCCCH
Confidence 999752 1 11 233444455544 44456666666543
|
| >3dtt_A NADP oxidoreductase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: NAP; 1.70A {Arthrobacter SP} | Back alignment and structure |
|---|
Probab=97.36 E-value=0.00066 Score=59.14 Aligned_cols=73 Identities=12% Similarity=0.146 Sum_probs=47.1
Q ss_pred CCcEEEEEcCCChhHHHHHHHHHhcccCCCCCCeEEEEEecccchhhhhhh--------HhhhhhhccCCccceEEeCCH
Q 019990 4 NPLRVLVTGAAGQIGYALVPMIARGIMLGPDQPVILHMLDIEPAAEALNGV--------KMELIDAAFPLLKGVVATTDV 75 (332)
Q Consensus 4 ~~~kI~VtGaaG~IGs~l~~~L~~~~~~~~~~~~~i~l~D~~~~~~~~~~~--------~~dl~~~~~~~~~~v~~~~~~ 75 (332)
..+||+|+| +|.+|++++..|+..++ +|.++|++......... ..++... ..... ..+.
T Consensus 18 ~~~kIgiIG-~G~mG~alA~~L~~~G~-------~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~-~~~~ 84 (245)
T 3dtt_A 18 QGMKIAVLG-TGTVGRTMAGALADLGH-------EVTIGTRDPKATLARAEPDAMGAPPFSQWLPE----HPHVH-LAAF 84 (245)
T ss_dssp -CCEEEEEC-CSHHHHHHHHHHHHTTC-------EEEEEESCHHHHHTCC-------CCHHHHGGG----STTCE-EEEH
T ss_pred CCCeEEEEC-CCHHHHHHHHHHHHCCC-------EEEEEeCChhhhhhhhhhhhhcchhhhHHHhh----cCcee-ccCH
Confidence 468999999 79999999999998875 89999986421000000 1111110 01122 3456
Q ss_pred HHHhCCCcEEEEec
Q 019990 76 VEACKDVNIAVMVG 89 (332)
Q Consensus 76 ~~a~~~aDiVi~~a 89 (332)
.++++++|+||++.
T Consensus 85 ~e~~~~aDvVilav 98 (245)
T 3dtt_A 85 ADVAAGAELVVNAT 98 (245)
T ss_dssp HHHHHHCSEEEECS
T ss_pred HHHHhcCCEEEEcc
Confidence 77889999999874
|
| >2izz_A Pyrroline-5-carboxylate reductase 1; amino-acid biosynthesis, NADP, oxidoreductase, proline biosy; HET: NAD; 1.95A {Homo sapiens} PDB: 2ger_A 2gr9_A* 2gra_A* | Back alignment and structure |
|---|
Probab=97.35 E-value=0.00087 Score=60.88 Aligned_cols=103 Identities=16% Similarity=0.138 Sum_probs=61.1
Q ss_pred CCCcEEEEEcCCChhHHHHHHHHHhcccCCCCCCeEEEEEecccchhhhhhhHhhhhhhccCCccceEEeCCHHHHhCCC
Q 019990 3 KNPLRVLVTGAAGQIGYALVPMIARGIMLGPDQPVILHMLDIEPAAEALNGVKMELIDAAFPLLKGVVATTDVVEACKDV 82 (332)
Q Consensus 3 ~~~~kI~VtGaaG~IGs~l~~~L~~~~~~~~~~~~~i~l~D~~~~~~~~~~~~~dl~~~~~~~~~~v~~~~~~~~a~~~a 82 (332)
+++|||+|+| +|.+|+.++..|.+.+... ..+|.++|++...+.++ .+... .+....+..++++++
T Consensus 20 ~~~mkI~iIG-~G~mG~ala~~L~~~G~~~---~~~V~v~~r~~~~~~~~----~l~~~------G~~~~~~~~e~~~~a 85 (322)
T 2izz_A 20 FQSMSVGFIG-AGQLAFALAKGFTAAGVLA---AHKIMASSPDMDLATVS----ALRKM------GVKLTPHNKETVQHS 85 (322)
T ss_dssp --CCCEEEES-CSHHHHHHHHHHHHTTSSC---GGGEEEECSCTTSHHHH----HHHHH------TCEEESCHHHHHHHC
T ss_pred cCCCEEEEEC-CCHHHHHHHHHHHHCCCCC---cceEEEECCCccHHHHH----HHHHc------CCEEeCChHHHhccC
Confidence 3457899999 6999999999998877311 12789999864201222 12111 233445667788899
Q ss_pred cEEEEecCCCCCCCCChhHHHhhhHHHHHHHHHHHHhhcCCCcEEEEEeCChh
Q 019990 83 NIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEKHAAPNCKVLVVANPAN 135 (332)
Q Consensus 83 DiVi~~ag~~~~~~~~~~~~~~~N~~~~~~i~~~i~~~~~~~~~viv~snp~~ 135 (332)
|+||++.- + . .+.++++.+.....++..++-++|.+.
T Consensus 86 DvVilav~----~----~--------~~~~vl~~l~~~l~~~~ivvs~s~gi~ 122 (322)
T 2izz_A 86 DVLFLAVK----P----H--------IIPFILDEIGADIEDRHIVVSCAAGVT 122 (322)
T ss_dssp SEEEECSC----G----G--------GHHHHHHHHGGGCCTTCEEEECCTTCC
T ss_pred CEEEEEeC----H----H--------HHHHHHHHHHhhcCCCCEEEEeCCCCC
Confidence 99999752 1 1 123344455554334555555666543
|
| >3doj_A AT3G25530, dehydrogenase-like protein; gamma-hydroxybutyrate dehydrogenase, 4-hydroxybutyrate dehydrogenase; 2.10A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=97.35 E-value=0.00047 Score=62.33 Aligned_cols=66 Identities=15% Similarity=0.202 Sum_probs=49.7
Q ss_pred CCcEEEEEcCCChhHHHHHHHHHhcccCCCCCCeEEEEEecccchhhhhhhHhhhhhhccCCccceEEeCCHHHHhCCCc
Q 019990 4 NPLRVLVTGAAGQIGYALVPMIARGIMLGPDQPVILHMLDIEPAAEALNGVKMELIDAAFPLLKGVVATTDVVEACKDVN 83 (332)
Q Consensus 4 ~~~kI~VtGaaG~IGs~l~~~L~~~~~~~~~~~~~i~l~D~~~~~~~~~~~~~dl~~~~~~~~~~v~~~~~~~~a~~~aD 83 (332)
+||||+|+| +|.+|+.++..|...|+ +|.++|++. +++. .+... .+....+..++++++|
T Consensus 20 ~m~~I~iIG-~G~mG~~~A~~l~~~G~-------~V~~~dr~~--~~~~----~l~~~------g~~~~~~~~~~~~~aD 79 (310)
T 3doj_A 20 HMMEVGFLG-LGIMGKAMSMNLLKNGF-------KVTVWNRTL--SKCD----ELVEH------GASVCESPAEVIKKCK 79 (310)
T ss_dssp CSCEEEEEC-CSHHHHHHHHHHHHTTC-------EEEEECSSG--GGGH----HHHHT------TCEECSSHHHHHHHCS
T ss_pred cCCEEEEEC-ccHHHHHHHHHHHHCCC-------eEEEEeCCH--HHHH----HHHHC------CCeEcCCHHHHHHhCC
Confidence 578999999 79999999999999886 899999864 2222 12211 2344567788889999
Q ss_pred EEEEec
Q 019990 84 IAVMVG 89 (332)
Q Consensus 84 iVi~~a 89 (332)
+||++.
T Consensus 80 vvi~~v 85 (310)
T 3doj_A 80 YTIAML 85 (310)
T ss_dssp EEEECC
T ss_pred EEEEEc
Confidence 999874
|
| >2wtb_A MFP2, fatty acid multifunctional protein (ATMFP2); oxidoreductase, peroxisomes, beta-oxidation, fatty acid oxidation; 2.50A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=97.35 E-value=0.00081 Score=67.87 Aligned_cols=103 Identities=16% Similarity=0.242 Sum_probs=63.6
Q ss_pred CCcEEEEEcCCChhHHHHHHHHHhcccCCCCCCeEEEEEecccchhhhhhhHhhhhh----hc----c------CCccce
Q 019990 4 NPLRVLVTGAAGQIGYALVPMIARGIMLGPDQPVILHMLDIEPAAEALNGVKMELID----AA----F------PLLKGV 69 (332)
Q Consensus 4 ~~~kI~VtGaaG~IGs~l~~~L~~~~~~~~~~~~~i~l~D~~~~~~~~~~~~~dl~~----~~----~------~~~~~v 69 (332)
+++||+|+| +|.+|+.++..|+..|+ +|+++|++. +.+......+.+ .. . .....+
T Consensus 311 ~~~kV~VIG-aG~MG~~iA~~la~aG~-------~V~l~D~~~--~~~~~~~~~i~~~l~~~~~~G~~~~~~~~~~~~~i 380 (725)
T 2wtb_A 311 KIKKVAIIG-GGLMGSGIATALILSNY-------PVILKEVNE--KFLEAGIGRVKANLQSRVRKGSMSQEKFEKTMSLL 380 (725)
T ss_dssp CCCCEEEEC-CSHHHHHHHHHHHTTTC-------CEEEECSSH--HHHHHHHHHHHHHHHHTTC----CTTHHHHTTTSE
T ss_pred cCcEEEEEc-CCHhhHHHHHHHHhCCC-------EEEEEECCH--HHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHhcce
Confidence 457899999 69999999999998886 899999864 223211111100 00 0 012346
Q ss_pred EEeCCHHHHhCCCcEEEEecCCCCCCCCChhHHHhhhHHHHHHHHHHHHhhcCCCcEEEEEeCC
Q 019990 70 VATTDVVEACKDVNIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEKHAAPNCKVLVVANP 133 (332)
Q Consensus 70 ~~~~~~~~a~~~aDiVi~~ag~~~~~~~~~~~~~~~N~~~~~~i~~~i~~~~~~~~~viv~snp 133 (332)
+..+++ +++++||+||.+.. . +....+.+...+..+.++++ |++||.
T Consensus 381 ~~~~d~-~~~~~aDlVIeaVp------e--------~~~vk~~v~~~l~~~~~~~~--Ilasnt 427 (725)
T 2wtb_A 381 KGSLDY-ESFRDVDMVIEAVI------E--------NISLKQQIFADLEKYCPQHC--ILASNT 427 (725)
T ss_dssp EEESSS-GGGTTCSEEEECCC------S--------CHHHHHHHHHHHHHHSCTTC--EEEECC
T ss_pred EEeCCH-HHHCCCCEEEEcCc------C--------CHHHHHHHHHHHHhhCCCCc--EEEeCC
Confidence 666666 67999999998741 1 12223455556666665555 335554
|
| >4e21_A 6-phosphogluconate dehydrogenase (decarboxylating; structural genomics, PSI-biology, NEW YORK structural genomi research consortium; 2.30A {Geobacter metallireducens} | Back alignment and structure |
|---|
Probab=97.33 E-value=0.00068 Score=62.61 Aligned_cols=66 Identities=17% Similarity=0.367 Sum_probs=47.0
Q ss_pred CCcEEEEEcCCChhHHHHHHHHHhcccCCCCCCeEEEEEecccchhhhhhhHhhhhhhccCCccceEEeCCHHHHhCCC-
Q 019990 4 NPLRVLVTGAAGQIGYALVPMIARGIMLGPDQPVILHMLDIEPAAEALNGVKMELIDAAFPLLKGVVATTDVVEACKDV- 82 (332)
Q Consensus 4 ~~~kI~VtGaaG~IGs~l~~~L~~~~~~~~~~~~~i~l~D~~~~~~~~~~~~~dl~~~~~~~~~~v~~~~~~~~a~~~a- 82 (332)
++|||+|+| .|.+|+.++..|+..++ +|.++|++. +++. .+... .+....++.++++++
T Consensus 21 ~~mkIgiIG-lG~mG~~~A~~L~~~G~-------~V~v~dr~~--~~~~----~l~~~------g~~~~~s~~e~~~~a~ 80 (358)
T 4e21_A 21 QSMQIGMIG-LGRMGADMVRRLRKGGH-------ECVVYDLNV--NAVQ----ALERE------GIAGARSIEEFCAKLV 80 (358)
T ss_dssp -CCEEEEEC-CSHHHHHHHHHHHHTTC-------EEEEECSCH--HHHH----HHHTT------TCBCCSSHHHHHHHSC
T ss_pred cCCEEEEEC-chHHHHHHHHHHHhCCC-------EEEEEeCCH--HHHH----HHHHC------CCEEeCCHHHHHhcCC
Confidence 457999999 79999999999999886 899999863 2222 22221 122345677777777
Q ss_pred --cEEEEec
Q 019990 83 --NIAVMVG 89 (332)
Q Consensus 83 --DiVi~~a 89 (332)
|+||++.
T Consensus 81 ~~DvVi~~v 89 (358)
T 4e21_A 81 KPRVVWLMV 89 (358)
T ss_dssp SSCEEEECS
T ss_pred CCCEEEEeC
Confidence 9999874
|
| >3hn2_A 2-dehydropantoate 2-reductase; PSI-2, NYSGXRC, structural GE protein structure initiative; 2.50A {Geobacter metallireducens} | Back alignment and structure |
|---|
Probab=97.31 E-value=0.00093 Score=60.37 Aligned_cols=118 Identities=18% Similarity=0.207 Sum_probs=65.4
Q ss_pred cEEEEEcCCChhHHHHHHHHHhcccCCCCCCeEEEEEecccchhhhhhhHhhhhhhccCC-ccceEEeCCHHHHhCCCcE
Q 019990 6 LRVLVTGAAGQIGYALVPMIARGIMLGPDQPVILHMLDIEPAAEALNGVKMELIDAAFPL-LKGVVATTDVVEACKDVNI 84 (332)
Q Consensus 6 ~kI~VtGaaG~IGs~l~~~L~~~~~~~~~~~~~i~l~D~~~~~~~~~~~~~dl~~~~~~~-~~~v~~~~~~~~a~~~aDi 84 (332)
|||+|+| +|.+|+.++..|.+.|. +|.+++++. .+.+......+....... ...+....+. +.+.++|+
T Consensus 3 mkI~IiG-aGaiG~~~a~~L~~~g~-------~V~~~~r~~-~~~i~~~g~~~~~~~g~~~~~~~~~~~~~-~~~~~~D~ 72 (312)
T 3hn2_A 3 LRIAIVG-AGALGLYYGALLQRSGE-------DVHFLLRRD-YEAIAGNGLKVFSINGDFTLPHVKGYRAP-EEIGPMDL 72 (312)
T ss_dssp -CEEEEC-CSTTHHHHHHHHHHTSC-------CEEEECSTT-HHHHHHTCEEEEETTCCEEESCCCEESCH-HHHCCCSE
T ss_pred CEEEEEC-cCHHHHHHHHHHHHCCC-------eEEEEEcCc-HHHHHhCCCEEEcCCCeEEEeeceeecCH-HHcCCCCE
Confidence 6899999 69999999999998775 799999853 111111000000000000 0122333454 44789999
Q ss_pred EEEecCCCCCCCCChhHHHhhhHHHHHHHHHHHHhhcCCCcEEEEEeCChhhHHHHHHHHCCCCCCCcE
Q 019990 85 AVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEKHAAPNCKVLVVANPANTNALILKEFAPSIPAKNI 153 (332)
Q Consensus 85 Vi~~ag~~~~~~~~~~~~~~~N~~~~~~i~~~i~~~~~~~~~viv~snp~~~~~~~~~~~~~~~~~~~i 153 (332)
||++. ++.. +.++++.++.+-.++..++.+.|.++.... +.+. ++..++
T Consensus 73 vilav----k~~~------------~~~~l~~l~~~l~~~~~iv~l~nGi~~~~~-l~~~---~~~~~v 121 (312)
T 3hn2_A 73 VLVGL----KTFA------------NSRYEELIRPLVEEGTQILTLQNGLGNEEA-LATL---FGAERI 121 (312)
T ss_dssp EEECC----CGGG------------GGGHHHHHGGGCCTTCEEEECCSSSSHHHH-HHHH---TCGGGE
T ss_pred EEEec----CCCC------------cHHHHHHHHhhcCCCCEEEEecCCCCcHHH-HHHH---CCCCcE
Confidence 99874 1111 123455555554456677777887764433 3333 455554
|
| >4ezb_A Uncharacterized conserved protein; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium; 2.10A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=97.29 E-value=0.0011 Score=60.24 Aligned_cols=69 Identities=13% Similarity=0.141 Sum_probs=47.1
Q ss_pred CcEEEEEcCCChhHHHHHHHHHhcc-cCCCCCCeEEEEEecccch-hhhhhhHhhhhhhccCCccceEEeC-CHHHHhCC
Q 019990 5 PLRVLVTGAAGQIGYALVPMIARGI-MLGPDQPVILHMLDIEPAA-EALNGVKMELIDAAFPLLKGVVATT-DVVEACKD 81 (332)
Q Consensus 5 ~~kI~VtGaaG~IGs~l~~~L~~~~-~~~~~~~~~i~l~D~~~~~-~~~~~~~~dl~~~~~~~~~~v~~~~-~~~~a~~~ 81 (332)
+|||+|+| +|.+|+.++..|+..| + +|.++|++... ++.......+... .+ .. +..+++++
T Consensus 24 ~m~IgvIG-~G~mG~~lA~~L~~~G~~-------~V~~~dr~~~~~~~~~~~~~~~~~~------g~--~~~s~~e~~~~ 87 (317)
T 4ezb_A 24 MTTIAFIG-FGEAAQSIAGGLGGRNAA-------RLAAYDLRFNDPAASGALRARAAEL------GV--EPLDDVAGIAC 87 (317)
T ss_dssp CCEEEEEC-CSHHHHHHHHHHHTTTCS-------EEEEECGGGGCTTTHHHHHHHHHHT------TC--EEESSGGGGGG
T ss_pred CCeEEEEC-ccHHHHHHHHHHHHcCCC-------eEEEEeCCCccccchHHHHHHHHHC------CC--CCCCHHHHHhc
Confidence 57999999 7999999999999887 5 89999986310 1111111222211 12 33 56678899
Q ss_pred CcEEEEec
Q 019990 82 VNIAVMVG 89 (332)
Q Consensus 82 aDiVi~~a 89 (332)
+|+||++.
T Consensus 88 aDvVi~av 95 (317)
T 4ezb_A 88 ADVVLSLV 95 (317)
T ss_dssp CSEEEECC
T ss_pred CCEEEEec
Confidence 99999874
|
| >2qyt_A 2-dehydropantoate 2-reductase; APC81190, porphyromonas gingi W83, structural genomics, PSI-2; HET: MSE; 2.15A {Porphyromonas gingivalis} | Back alignment and structure |
|---|
Probab=97.28 E-value=0.0011 Score=59.70 Aligned_cols=36 Identities=22% Similarity=0.339 Sum_probs=29.5
Q ss_pred CCCCCcEEEEEcCCChhHHHHHHHHHhc-----c-cCCCCCCeEEEEEec
Q 019990 1 MAKNPLRVLVTGAAGQIGYALVPMIARG-----I-MLGPDQPVILHMLDI 44 (332)
Q Consensus 1 m~~~~~kI~VtGaaG~IGs~l~~~L~~~-----~-~~~~~~~~~i~l~D~ 44 (332)
|+.++|||+|+| +|.+|+.++..|.+. + . +|.++|+
T Consensus 4 m~~~~m~I~iiG-~G~mG~~~a~~L~~~~~~~~g~~-------~V~~~~r 45 (317)
T 2qyt_A 4 MNQQPIKIAVFG-LGGVGGYYGAMLALRAAATDGLL-------EVSWIAR 45 (317)
T ss_dssp ---CCEEEEEEC-CSHHHHHHHHHHHHHHHHTTSSE-------EEEEECC
T ss_pred CCCCCCEEEEEC-cCHHHHHHHHHHHhCccccCCCC-------CEEEEEc
Confidence 666778999999 799999999999876 6 5 8999997
|
| >1lss_A TRK system potassium uptake protein TRKA homolog; KTN domain, NAD, RCK domain, potassium transport, potassium channel, KTRA; HET: NAD; 2.30A {Methanocaldococcus jannaschii} SCOP: c.2.1.9 | Back alignment and structure |
|---|
Probab=97.28 E-value=0.00033 Score=54.81 Aligned_cols=34 Identities=21% Similarity=0.529 Sum_probs=28.9
Q ss_pred CcEEEEEcCCChhHHHHHHHHHhcccCCCCCCeEEEEEeccc
Q 019990 5 PLRVLVTGAAGQIGYALVPMIARGIMLGPDQPVILHMLDIEP 46 (332)
Q Consensus 5 ~~kI~VtGaaG~IGs~l~~~L~~~~~~~~~~~~~i~l~D~~~ 46 (332)
.|||+|+| +|++|++++..|.+.+. ++.++|.+.
T Consensus 4 ~m~i~IiG-~G~iG~~~a~~L~~~g~-------~v~~~d~~~ 37 (140)
T 1lss_A 4 GMYIIIAG-IGRVGYTLAKSLSEKGH-------DIVLIDIDK 37 (140)
T ss_dssp -CEEEEEC-CSHHHHHHHHHHHHTTC-------EEEEEESCH
T ss_pred CCEEEEEC-CCHHHHHHHHHHHhCCC-------eEEEEECCH
Confidence 47899999 59999999999988775 899999853
|
| >3oj0_A Glutr, glutamyl-tRNA reductase; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: MSE SO4; 1.65A {Thermoplasma volcanium} | Back alignment and structure |
|---|
Probab=97.28 E-value=0.00039 Score=55.29 Aligned_cols=71 Identities=10% Similarity=0.147 Sum_probs=49.4
Q ss_pred CcEEEEEcCCChhHHHHHHHHHhcccCCCCCCeEEEEEecccchhhhhhhHhhhhhhccCCccceEEeCCHHHHhCCCcE
Q 019990 5 PLRVLVTGAAGQIGYALVPMIARGIMLGPDQPVILHMLDIEPAAEALNGVKMELIDAAFPLLKGVVATTDVVEACKDVNI 84 (332)
Q Consensus 5 ~~kI~VtGaaG~IGs~l~~~L~~~~~~~~~~~~~i~l~D~~~~~~~~~~~~~dl~~~~~~~~~~v~~~~~~~~a~~~aDi 84 (332)
.+||+|+| +|.+|+.++..|...+. ++.++|++. ++......++. .++....++.++++++|+
T Consensus 21 ~~~v~iiG-~G~iG~~~a~~l~~~g~-------~v~v~~r~~--~~~~~~a~~~~-------~~~~~~~~~~~~~~~~Di 83 (144)
T 3oj0_A 21 GNKILLVG-NGMLASEIAPYFSYPQY-------KVTVAGRNI--DHVRAFAEKYE-------YEYVLINDIDSLIKNNDV 83 (144)
T ss_dssp CCEEEEEC-CSHHHHHHGGGCCTTTC-------EEEEEESCH--HHHHHHHHHHT-------CEEEECSCHHHHHHTCSE
T ss_pred CCEEEEEC-CCHHHHHHHHHHHhCCC-------EEEEEcCCH--HHHHHHHHHhC-------CceEeecCHHHHhcCCCE
Confidence 57899999 69999999998877664 699999863 23322222211 123345677788899999
Q ss_pred EEEecCCC
Q 019990 85 AVMVGGFP 92 (332)
Q Consensus 85 Vi~~ag~~ 92 (332)
||.+.+.+
T Consensus 84 vi~at~~~ 91 (144)
T 3oj0_A 84 IITATSSK 91 (144)
T ss_dssp EEECSCCS
T ss_pred EEEeCCCC
Confidence 99986544
|
| >2pv7_A T-protein [includes: chorismate mutase (EC 5.4.99 and prephenate dehydrogenase (EC...; 1574749, chorismate mutase type II; HET: MSE TYR NAD; 2.00A {Haemophilus influenzae} SCOP: a.100.1.12 c.2.1.6 | Back alignment and structure |
|---|
Probab=97.28 E-value=0.0014 Score=58.89 Aligned_cols=53 Identities=11% Similarity=0.199 Sum_probs=42.1
Q ss_pred CcEEEEEcCCChhHHHHHHHHHhcccCCCCCCeEEEEEecccchhhhhhhHhhhhhhccCCccceEEeCCHHHHhCCCcE
Q 019990 5 PLRVLVTGAAGQIGYALVPMIARGIMLGPDQPVILHMLDIEPAAEALNGVKMELIDAAFPLLKGVVATTDVVEACKDVNI 84 (332)
Q Consensus 5 ~~kI~VtGaaG~IGs~l~~~L~~~~~~~~~~~~~i~l~D~~~~~~~~~~~~~dl~~~~~~~~~~v~~~~~~~~a~~~aDi 84 (332)
++||+|+||+|.+|..++..|...|+ +|.++|++.. .+..++++++|+
T Consensus 21 ~~~I~iIGg~G~mG~~la~~l~~~G~-------~V~~~~~~~~-------------------------~~~~~~~~~aDv 68 (298)
T 2pv7_A 21 IHKIVIVGGYGKLGGLFARYLRASGY-------PISILDREDW-------------------------AVAESILANADV 68 (298)
T ss_dssp CCCEEEETTTSHHHHHHHHHHHTTTC-------CEEEECTTCG-------------------------GGHHHHHTTCSE
T ss_pred CCEEEEEcCCCHHHHHHHHHHHhCCC-------eEEEEECCcc-------------------------cCHHHHhcCCCE
Confidence 35899999779999999999998775 7889987421 134567889999
Q ss_pred EEEec
Q 019990 85 AVMVG 89 (332)
Q Consensus 85 Vi~~a 89 (332)
||++.
T Consensus 69 Vilav 73 (298)
T 2pv7_A 69 VIVSV 73 (298)
T ss_dssp EEECS
T ss_pred EEEeC
Confidence 99874
|
| >3ggo_A Prephenate dehydrogenase; TYRA, HPP, NADH, alpha-beta, oxidoreductase; HET: NAI ENO; 2.15A {Aquifex aeolicus} PDB: 3ggg_D* 3ggp_A* | Back alignment and structure |
|---|
Probab=97.25 E-value=0.003 Score=57.19 Aligned_cols=69 Identities=19% Similarity=0.262 Sum_probs=46.9
Q ss_pred CcEEEEEcCCChhHHHHHHHHHhcccCCCCCCeEEEEEecccchhhhhhhHhhhhhhccCCccceEEeCCHHH-HhCCCc
Q 019990 5 PLRVLVTGAAGQIGYALVPMIARGIMLGPDQPVILHMLDIEPAAEALNGVKMELIDAAFPLLKGVVATTDVVE-ACKDVN 83 (332)
Q Consensus 5 ~~kI~VtGaaG~IGs~l~~~L~~~~~~~~~~~~~i~l~D~~~~~~~~~~~~~dl~~~~~~~~~~v~~~~~~~~-a~~~aD 83 (332)
.+||+|+| +|.+|..++..|...|+. .+|.++|++. +.+.. ..... .. .....+..+ ++++||
T Consensus 33 ~~kI~IIG-~G~mG~slA~~l~~~G~~-----~~V~~~dr~~--~~~~~----a~~~G---~~-~~~~~~~~~~~~~~aD 96 (314)
T 3ggo_A 33 MQNVLIVG-VGFMGGSFAKSLRRSGFK-----GKIYGYDINP--ESISK----AVDLG---II-DEGTTSIAKVEDFSPD 96 (314)
T ss_dssp CSEEEEES-CSHHHHHHHHHHHHTTCC-----SEEEEECSCH--HHHHH----HHHTT---SC-SEEESCTTGGGGGCCS
T ss_pred CCEEEEEe-eCHHHHHHHHHHHhCCCC-----CEEEEEECCH--HHHHH----HHHCC---Cc-chhcCCHHHHhhccCC
Confidence 47999999 799999999999988752 2799999863 22221 11110 00 122355667 789999
Q ss_pred EEEEec
Q 019990 84 IAVMVG 89 (332)
Q Consensus 84 iVi~~a 89 (332)
+||++.
T Consensus 97 vVilav 102 (314)
T 3ggo_A 97 FVMLSS 102 (314)
T ss_dssp EEEECS
T ss_pred EEEEeC
Confidence 999874
|
| >4dll_A 2-hydroxy-3-oxopropionate reductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, oxidoreductase; 2.11A {Polaromonas SP} | Back alignment and structure |
|---|
Probab=97.25 E-value=0.0011 Score=60.20 Aligned_cols=66 Identities=17% Similarity=0.284 Sum_probs=49.7
Q ss_pred CCcEEEEEcCCChhHHHHHHHHHhcccCCCCCCeEEEEEecccchhhhhhhHhhhhhhccCCccceEEeCCHHHHhCCCc
Q 019990 4 NPLRVLVTGAAGQIGYALVPMIARGIMLGPDQPVILHMLDIEPAAEALNGVKMELIDAAFPLLKGVVATTDVVEACKDVN 83 (332)
Q Consensus 4 ~~~kI~VtGaaG~IGs~l~~~L~~~~~~~~~~~~~i~l~D~~~~~~~~~~~~~dl~~~~~~~~~~v~~~~~~~~a~~~aD 83 (332)
++|||+|+| +|.+|+.++..|...|+ +|.++|++. +++. .+... .+....++.++++++|
T Consensus 30 ~~~~I~iIG-~G~mG~~~a~~l~~~G~-------~V~~~dr~~--~~~~----~l~~~------g~~~~~~~~e~~~~aD 89 (320)
T 4dll_A 30 YARKITFLG-TGSMGLPMARRLCEAGY-------ALQVWNRTP--ARAA----SLAAL------GATIHEQARAAARDAD 89 (320)
T ss_dssp CCSEEEEEC-CTTTHHHHHHHHHHTTC-------EEEEECSCH--HHHH----HHHTT------TCEEESSHHHHHTTCS
T ss_pred CCCEEEEEC-ccHHHHHHHHHHHhCCC-------eEEEEcCCH--HHHH----HHHHC------CCEeeCCHHHHHhcCC
Confidence 357999999 79999999999998876 899999863 2222 22211 2445677888899999
Q ss_pred EEEEec
Q 019990 84 IAVMVG 89 (332)
Q Consensus 84 iVi~~a 89 (332)
+||.+.
T Consensus 90 vVi~~v 95 (320)
T 4dll_A 90 IVVSML 95 (320)
T ss_dssp EEEECC
T ss_pred EEEEEC
Confidence 999874
|
| >3g0o_A 3-hydroxyisobutyrate dehydrogenase; NAD(P), valine catabolism, tartaric acid, target 11128H, NYSGXRC, PSI-2, structural genomics; HET: TLA; 1.80A {Salmonella typhimurium} | Back alignment and structure |
|---|
Probab=97.25 E-value=0.00054 Score=61.67 Aligned_cols=67 Identities=19% Similarity=0.234 Sum_probs=47.3
Q ss_pred CCcEEEEEcCCChhHHHHHHHHHhcccCCCCCCeEEEEEecccchhhhhhhHhhhhhhccCCccceEEeCCHHHHhCCCc
Q 019990 4 NPLRVLVTGAAGQIGYALVPMIARGIMLGPDQPVILHMLDIEPAAEALNGVKMELIDAAFPLLKGVVATTDVVEACKDVN 83 (332)
Q Consensus 4 ~~~kI~VtGaaG~IGs~l~~~L~~~~~~~~~~~~~i~l~D~~~~~~~~~~~~~dl~~~~~~~~~~v~~~~~~~~a~~~aD 83 (332)
+++||+|+| +|.+|+.++..|...|+ +|.++|++. ++++ .+.... -.....+..++++++|
T Consensus 6 ~~~~I~iIG-~G~mG~~~a~~l~~~G~-------~V~~~dr~~--~~~~----~~~~~g-----~~~~~~~~~e~~~~aD 66 (303)
T 3g0o_A 6 TDFHVGIVG-LGSMGMGAARSCLRAGL-------STWGADLNP--QACA----NLLAEG-----ACGAAASAREFAGVVD 66 (303)
T ss_dssp -CCEEEEEC-CSHHHHHHHHHHHHTTC-------EEEEECSCH--HHHH----HHHHTT-----CSEEESSSTTTTTTCS
T ss_pred CCCeEEEEC-CCHHHHHHHHHHHHCCC-------eEEEEECCH--HHHH----HHHHcC-----CccccCCHHHHHhcCC
Confidence 467999999 79999999999999886 899999863 2222 222210 0111456677789999
Q ss_pred EEEEec
Q 019990 84 IAVMVG 89 (332)
Q Consensus 84 iVi~~a 89 (332)
+||.+.
T Consensus 67 vvi~~v 72 (303)
T 3g0o_A 67 ALVILV 72 (303)
T ss_dssp EEEECC
T ss_pred EEEEEC
Confidence 999874
|
| >1id1_A Putative potassium channel protein; RCK domain, E.coli potassium channel, BK channel, rossmann fold, membrane protein; 2.40A {Escherichia coli} SCOP: c.2.1.9 | Back alignment and structure |
|---|
Probab=97.24 E-value=0.0004 Score=55.77 Aligned_cols=76 Identities=9% Similarity=0.083 Sum_probs=45.2
Q ss_pred CcEEEEEcCCChhHHHHHHHHHhcccCCCCCCeEEEEEecccchhhhhhhHhhhhhhccCCccceEEeCCHHHH-hCCCc
Q 019990 5 PLRVLVTGAAGQIGYALVPMIARGIMLGPDQPVILHMLDIEPAAEALNGVKMELIDAAFPLLKGVVATTDVVEA-CKDVN 83 (332)
Q Consensus 5 ~~kI~VtGaaG~IGs~l~~~L~~~~~~~~~~~~~i~l~D~~~~~~~~~~~~~dl~~~~~~~~~~v~~~~~~~~a-~~~aD 83 (332)
.++|+|+| +|.+|+.++..|...+. +++++|.+.. ++.......+........++.+....+.++ +.++|
T Consensus 3 ~~~vlI~G-~G~vG~~la~~L~~~g~-------~V~vid~~~~-~~~~~~~~~~~~~~~~i~gd~~~~~~l~~a~i~~ad 73 (153)
T 1id1_A 3 KDHFIVCG-HSILAINTILQLNQRGQ-------NVTVISNLPE-DDIKQLEQRLGDNADVIPGDSNDSSVLKKAGIDRCR 73 (153)
T ss_dssp CSCEEEEC-CSHHHHHHHHHHHHTTC-------CEEEEECCCH-HHHHHHHHHHCTTCEEEESCTTSHHHHHHHTTTTCS
T ss_pred CCcEEEEC-CCHHHHHHHHHHHHCCC-------CEEEEECCCh-HHHHHHHHhhcCCCeEEEcCCCCHHHHHHcChhhCC
Confidence 45799999 69999999999998775 7999998521 112111111111100111232222234444 78999
Q ss_pred EEEEec
Q 019990 84 IAVMVG 89 (332)
Q Consensus 84 iVi~~a 89 (332)
.||.+.
T Consensus 74 ~vi~~~ 79 (153)
T 1id1_A 74 AILALS 79 (153)
T ss_dssp EEEECS
T ss_pred EEEEec
Confidence 999874
|
| >4ina_A Saccharopine dehydrogenase; structural genomics, PSI-biology, northeast structural genom consortium, NESG, oxidoreductas; 2.49A {Wolinella succinogenes} | Back alignment and structure |
|---|
Probab=97.23 E-value=0.00021 Score=67.26 Aligned_cols=79 Identities=11% Similarity=0.090 Sum_probs=49.1
Q ss_pred CcEEEEEcCCChhHHHHHHHHHhcccCCCCCCeEEEEEecccchhhhhhhHhhhhhh---cc-CCccceEEeCCHHHHhC
Q 019990 5 PLRVLVTGAAGQIGYALVPMIARGIMLGPDQPVILHMLDIEPAAEALNGVKMELIDA---AF-PLLKGVVATTDVVEACK 80 (332)
Q Consensus 5 ~~kI~VtGaaG~IGs~l~~~L~~~~~~~~~~~~~i~l~D~~~~~~~~~~~~~dl~~~---~~-~~~~~v~~~~~~~~a~~ 80 (332)
|+||+|+|| |+||+.++..|++.+.. ..+|.+.|++. +++.....++... .. ....++....++.+.++
T Consensus 1 M~kVlIiGa-GgiG~~ia~~L~~~g~~----~~~V~v~~r~~--~~~~~la~~l~~~~~~~~~~~~~D~~d~~~l~~~l~ 73 (405)
T 4ina_A 1 MAKVLQIGA-GGVGGVVAHKMAMNREV----FSHITLASRTL--SKCQEIAQSIKAKGYGEIDITTVDADSIEELVALIN 73 (405)
T ss_dssp -CEEEEECC-SHHHHHHHHHHHTCTTT----CCEEEEEESCH--HHHHHHHHHHHHTTCCCCEEEECCTTCHHHHHHHHH
T ss_pred CCEEEEECC-CHHHHHHHHHHHhCCCC----ceEEEEEECCH--HHHHHHHHHhhhhcCCceEEEEecCCCHHHHHHHHH
Confidence 468999996 99999999999886521 01789999864 3444333333321 01 01123333344566666
Q ss_pred C--CcEEEEecC
Q 019990 81 D--VNIAVMVGG 90 (332)
Q Consensus 81 ~--aDiVi~~ag 90 (332)
+ +|+||++++
T Consensus 74 ~~~~DvVin~ag 85 (405)
T 4ina_A 74 EVKPQIVLNIAL 85 (405)
T ss_dssp HHCCSEEEECSC
T ss_pred hhCCCEEEECCC
Confidence 6 899999986
|
| >3pdu_A 3-hydroxyisobutyrate dehydrogenase family protein; gamma-hydroxybutyrate dehydrogenase, succinic semialdehyde R glyoxylate metabolism; HET: NAP; 1.89A {Geobacter sulfurreducens} | Back alignment and structure |
|---|
Probab=97.23 E-value=0.0005 Score=61.30 Aligned_cols=65 Identities=15% Similarity=0.244 Sum_probs=48.2
Q ss_pred CcEEEEEcCCChhHHHHHHHHHhcccCCCCCCeEEEEEecccchhhhhhhHhhhhhhccCCccceEEeCCHHHHhCCCcE
Q 019990 5 PLRVLVTGAAGQIGYALVPMIARGIMLGPDQPVILHMLDIEPAAEALNGVKMELIDAAFPLLKGVVATTDVVEACKDVNI 84 (332)
Q Consensus 5 ~~kI~VtGaaG~IGs~l~~~L~~~~~~~~~~~~~i~l~D~~~~~~~~~~~~~dl~~~~~~~~~~v~~~~~~~~a~~~aDi 84 (332)
|+||+|+| +|.+|+.++..|...|+ +|.++|++. ++.. .+.+. .+....+..++++++|+
T Consensus 1 M~~I~iiG-~G~mG~~~a~~l~~~G~-------~V~~~dr~~--~~~~----~~~~~------g~~~~~~~~~~~~~adv 60 (287)
T 3pdu_A 1 MTTYGFLG-LGIMGGPMAANLVRAGF-------DVTVWNRNP--AKCA----PLVAL------GARQASSPAEVCAACDI 60 (287)
T ss_dssp CCCEEEEC-CSTTHHHHHHHHHHHTC-------CEEEECSSG--GGGH----HHHHH------TCEECSCHHHHHHHCSE
T ss_pred CCeEEEEc-cCHHHHHHHHHHHHCCC-------eEEEEcCCH--HHHH----HHHHC------CCeecCCHHHHHHcCCE
Confidence 46899999 79999999999998875 799999864 2222 12211 23445677888899999
Q ss_pred EEEec
Q 019990 85 AVMVG 89 (332)
Q Consensus 85 Vi~~a 89 (332)
||.+.
T Consensus 61 vi~~v 65 (287)
T 3pdu_A 61 TIAML 65 (287)
T ss_dssp EEECC
T ss_pred EEEEc
Confidence 99874
|
| >3b1f_A Putative prephenate dehydrogenase; enzyme, 4-hydroxyphenylpyruvate, oxidative decarboxylation pathway, tyrosine biosynthesis, oxidoreduct; HET: NAD; 2.10A {Streptococcus mutans} PDB: 3dzb_A | Back alignment and structure |
|---|
Probab=97.23 E-value=0.0037 Score=55.59 Aligned_cols=70 Identities=14% Similarity=0.132 Sum_probs=45.9
Q ss_pred CCcEEEEEcCCChhHHHHHHHHHhcccCCCCCCeEEEEEecccchhhhhhhHhhhhhhccCCccceEEeCCHHHHhCCCc
Q 019990 4 NPLRVLVTGAAGQIGYALVPMIARGIMLGPDQPVILHMLDIEPAAEALNGVKMELIDAAFPLLKGVVATTDVVEACKDVN 83 (332)
Q Consensus 4 ~~~kI~VtGaaG~IGs~l~~~L~~~~~~~~~~~~~i~l~D~~~~~~~~~~~~~dl~~~~~~~~~~v~~~~~~~~a~~~aD 83 (332)
+++||+|+| +|.+|+.++..|...+. + .+|.++|++. +... .+..... .+ ....+..++++++|
T Consensus 5 ~~~~I~iIG-~G~mG~~~a~~l~~~g~-~----~~V~~~d~~~--~~~~----~~~~~g~---~~-~~~~~~~~~~~~aD 68 (290)
T 3b1f_A 5 EEKTIYIAG-LGLIGASLALGIKRDHP-H----YKIVGYNRSD--RSRD----IALERGI---VD-EATADFKVFAALAD 68 (290)
T ss_dssp CCCEEEEEC-CSHHHHHHHHHHHHHCT-T----SEEEEECSSH--HHHH----HHHHTTS---CS-EEESCTTTTGGGCS
T ss_pred ccceEEEEe-eCHHHHHHHHHHHhCCC-C----cEEEEEcCCH--HHHH----HHHHcCC---cc-cccCCHHHhhcCCC
Confidence 367999999 79999999999987642 1 2899999853 2222 1111100 00 22345566788999
Q ss_pred EEEEec
Q 019990 84 IAVMVG 89 (332)
Q Consensus 84 iVi~~a 89 (332)
+||++.
T Consensus 69 vVilav 74 (290)
T 3b1f_A 69 VIILAV 74 (290)
T ss_dssp EEEECS
T ss_pred EEEEcC
Confidence 999874
|
| >1vpd_A Tartronate semialdehyde reductase; structural genomics, MCSG, protein structure initiative, PSI, midwest center for structural genomics; HET: MSE TLA; 1.65A {Salmonella typhimurium} SCOP: a.100.1.1 c.2.1.6 | Back alignment and structure |
|---|
Probab=97.21 E-value=0.0019 Score=57.65 Aligned_cols=64 Identities=19% Similarity=0.324 Sum_probs=46.7
Q ss_pred cEEEEEcCCChhHHHHHHHHHhcccCCCCCCeEEEEEecccchhhhhhhHhhhhhhccCCccceEEeCCHHHHhCCCcEE
Q 019990 6 LRVLVTGAAGQIGYALVPMIARGIMLGPDQPVILHMLDIEPAAEALNGVKMELIDAAFPLLKGVVATTDVVEACKDVNIA 85 (332)
Q Consensus 6 ~kI~VtGaaG~IGs~l~~~L~~~~~~~~~~~~~i~l~D~~~~~~~~~~~~~dl~~~~~~~~~~v~~~~~~~~a~~~aDiV 85 (332)
|||+|+| +|.+|+.++..|...++ +|.++|++. +... .+... .+....+..++++++|+|
T Consensus 6 m~i~iiG-~G~~G~~~a~~l~~~g~-------~V~~~~~~~--~~~~----~~~~~------g~~~~~~~~~~~~~~D~v 65 (299)
T 1vpd_A 6 MKVGFIG-LGIMGKPMSKNLLKAGY-------SLVVSDRNP--EAIA----DVIAA------GAETASTAKAIAEQCDVI 65 (299)
T ss_dssp CEEEEEC-CSTTHHHHHHHHHHTTC-------EEEEECSCH--HHHH----HHHHT------TCEECSSHHHHHHHCSEE
T ss_pred ceEEEEC-chHHHHHHHHHHHhCCC-------EEEEEeCCH--HHHH----HHHHC------CCeecCCHHHHHhCCCEE
Confidence 6999999 79999999999988775 899999853 2222 12111 233455677778899999
Q ss_pred EEec
Q 019990 86 VMVG 89 (332)
Q Consensus 86 i~~a 89 (332)
|++.
T Consensus 66 i~~v 69 (299)
T 1vpd_A 66 ITML 69 (299)
T ss_dssp EECC
T ss_pred EEEC
Confidence 9875
|
| >3l9w_A Glutathione-regulated potassium-efflux system Pro linker, ancillary protein KEFF; potassium channel regulation, domains, antiport; HET: FMN AMP GSH; 1.75A {Escherichia coli} PDB: 3eyw_A* 3l9x_A* | Back alignment and structure |
|---|
Probab=97.20 E-value=0.0019 Score=60.74 Aligned_cols=99 Identities=14% Similarity=0.243 Sum_probs=61.0
Q ss_pred CCcEEEEEcCCChhHHHHHHHHHhcccCCCCCCeEEEEEecccchhhhhhhHhhhhhhccC-CccceEEeCCHHHH-hCC
Q 019990 4 NPLRVLVTGAAGQIGYALVPMIARGIMLGPDQPVILHMLDIEPAAEALNGVKMELIDAAFP-LLKGVVATTDVVEA-CKD 81 (332)
Q Consensus 4 ~~~kI~VtGaaG~IGs~l~~~L~~~~~~~~~~~~~i~l~D~~~~~~~~~~~~~dl~~~~~~-~~~~v~~~~~~~~a-~~~ 81 (332)
+.++|+|+| .|.+|+.++..|...++ +++++|.+. +.+. .+.....+ +.+|.+....+.++ +.+
T Consensus 3 ~~~~viIiG-~Gr~G~~va~~L~~~g~-------~vvvId~d~--~~v~----~~~~~g~~vi~GDat~~~~L~~agi~~ 68 (413)
T 3l9w_A 3 HGMRVIIAG-FGRFGQITGRLLLSSGV-------KMVVLDHDP--DHIE----TLRKFGMKVFYGDATRMDLLESAGAAK 68 (413)
T ss_dssp -CCSEEEEC-CSHHHHHHHHHHHHTTC-------CEEEEECCH--HHHH----HHHHTTCCCEESCTTCHHHHHHTTTTT
T ss_pred CCCeEEEEC-CCHHHHHHHHHHHHCCC-------CEEEEECCH--HHHH----HHHhCCCeEEEcCCCCHHHHHhcCCCc
Confidence 356899999 69999999999998876 799999864 2222 22222111 12333333334444 678
Q ss_pred CcEEEEecCCCCCCCCChhHHHhhhHHHHHHHHHHHHhhcCCCcEEEEEeC
Q 019990 82 VNIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEKHAAPNCKVLVVAN 132 (332)
Q Consensus 82 aDiVi~~ag~~~~~~~~~~~~~~~N~~~~~~i~~~i~~~~~~~~~viv~sn 132 (332)
||+||.+.+. . ..| ..++..+++.. |+.++++-++
T Consensus 69 A~~viv~~~~--------~---~~n----~~i~~~ar~~~-p~~~Iiara~ 103 (413)
T 3l9w_A 69 AEVLINAIDD--------P---QTN----LQLTEMVKEHF-PHLQIIARAR 103 (413)
T ss_dssp CSEEEECCSS--------H---HHH----HHHHHHHHHHC-TTCEEEEEES
T ss_pred cCEEEECCCC--------h---HHH----HHHHHHHHHhC-CCCeEEEEEC
Confidence 9999987421 1 223 34556677775 7766666554
|
| >2et6_A (3R)-hydroxyacyl-COA dehydrogenase; MFE-2, beta-oxidation, peroxisome, SDR, oxido; 2.22A {Candida tropicalis} | Back alignment and structure |
|---|
Probab=97.19 E-value=0.0016 Score=64.39 Aligned_cols=153 Identities=14% Similarity=0.111 Sum_probs=89.2
Q ss_pred CcEEEEEcCCChhHHHHHHHHHhcccCCCCCCeEEEEEecccchhhhhhhHhhhhhhc---cCCccce-EEeCC----HH
Q 019990 5 PLRVLVTGAAGQIGYALVPMIARGIMLGPDQPVILHMLDIEPAAEALNGVKMELIDAA---FPLLKGV-VATTD----VV 76 (332)
Q Consensus 5 ~~kI~VtGaaG~IGs~l~~~L~~~~~~~~~~~~~i~l~D~~~~~~~~~~~~~dl~~~~---~~~~~~v-~~~~~----~~ 76 (332)
.+.++||||++-||.+++..|++.|. +|++.|+... .....++.... .....|+ ..... ..
T Consensus 322 gkvalVTGas~GIG~a~A~~la~~Ga-------~Vv~~~~~~~----~~~~~~i~~~g~~~~~~~~Dv~~~~~~~~~~~~ 390 (604)
T 2et6_A 322 DKVVLITGAGAGLGKEYAKWFAKYGA-------KVVVNDFKDA----TKTVDEIKAAGGEAWPDQHDVAKDSEAIIKNVI 390 (604)
T ss_dssp TCEEEESSCSSHHHHHHHHHHHHTTC-------EEEEECSSCC----HHHHHHHHHTTCEEEEECCCHHHHHHHHHHHHH
T ss_pred CCeEEEECcchHHHHHHHHHHHHCCC-------EEEEEeCccH----HHHHHHHHhcCCeEEEEEcChHHHHHHHHHHHH
Confidence 45789999999999999999999886 7888886322 22222332211 0111233 11111 11
Q ss_pred HHhCCCcEEEEecCCCCCC---CCChh---HHHhhhHHHH----HHHHHHHHhhcCCCcEEEEEeCChhhHHHHHHHHCC
Q 019990 77 EACKDVNIAVMVGGFPRKE---GMERK---DVMSKNVSIY----KAQASALEKHAAPNCKVLVVANPANTNALILKEFAP 146 (332)
Q Consensus 77 ~a~~~aDiVi~~ag~~~~~---~~~~~---~~~~~N~~~~----~~i~~~i~~~~~~~~~viv~snp~~~~~~~~~~~~~ 146 (332)
+.+-..|++|+.||+.+.. ..+.+ ..+..|+... +.++..+++. ..++||++|+.... .
T Consensus 391 ~~~G~iDiLVnNAGi~~~~~~~~~~~~~~~~~~~vNl~g~~~~~~~~~p~m~~~--~~G~IVnisS~ag~---------~ 459 (604)
T 2et6_A 391 DKYGTIDILVNNAGILRDRSFAKMSKQEWDSVQQVHLIGTFNLSRLAWPYFVEK--QFGRIINITSTSGI---------Y 459 (604)
T ss_dssp HHHSCCCEEEECCCCCCCBCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHT--TCEEEEEECCHHHH---------S
T ss_pred HhcCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHc--CCCEEEEECChhhc---------c
Confidence 2244689999999975321 23333 2456676555 4444445443 34688888763221 1
Q ss_pred CCCCCcEEEeecccHHHHHHHHHHHcCCCCCCeee
Q 019990 147 SIPAKNITCLTRLDHNRAMGQISERLKVHVSDVKN 181 (332)
Q Consensus 147 ~~~~~~i~~~t~l~~~r~~~~~a~~~~v~~~~v~~ 181 (332)
+.+....|+.+|..-..+.+.+|..+. +..||.
T Consensus 460 ~~~~~~~Y~asKaal~~lt~~la~El~--~~gIrV 492 (604)
T 2et6_A 460 GNFGQANYSSSKAGILGLSKTMAIEGA--KNNIKV 492 (604)
T ss_dssp CCTTBHHHHHHHHHHHHHHHHHHHHHG--GGTEEE
T ss_pred CCCCChhHHHHHHHHHHHHHHHHHHhC--ccCeEE
Confidence 223233577788777788888887764 455664
|
| >1txg_A Glycerol-3-phosphate dehydrogenase [NAD(P)+]; oxidoreductase; 1.70A {Archaeoglobus fulgidus} SCOP: a.100.1.6 c.2.1.6 | Back alignment and structure |
|---|
Probab=97.18 E-value=0.0034 Score=56.86 Aligned_cols=70 Identities=17% Similarity=0.191 Sum_probs=46.8
Q ss_pred cEEEEEcCCChhHHHHHHHHHhcccCCCCCCeEEEEEec--ccchhhhhhhHhhhhhhc--cCCc---cceEEeC--CHH
Q 019990 6 LRVLVTGAAGQIGYALVPMIARGIMLGPDQPVILHMLDI--EPAAEALNGVKMELIDAA--FPLL---KGVVATT--DVV 76 (332)
Q Consensus 6 ~kI~VtGaaG~IGs~l~~~L~~~~~~~~~~~~~i~l~D~--~~~~~~~~~~~~dl~~~~--~~~~---~~v~~~~--~~~ 76 (332)
|||+|+| +|.+|+.++..|.+.++ +|.++|+ +. +.+. .+.... .... .++.... +..
T Consensus 1 m~I~iiG-~G~mG~~~a~~L~~~g~-------~V~~~~r~~~~--~~~~----~~~~~~~~~~~g~~~~~~~~~~~~~~~ 66 (335)
T 1txg_A 1 MIVSILG-AGAMGSALSVPLVDNGN-------EVRIWGTEFDT--EILK----SISAGREHPRLGVKLNGVEIFWPEQLE 66 (335)
T ss_dssp CEEEEES-CCHHHHHHHHHHHHHCC-------EEEEECCGGGH--HHHH----HHHTTCCBTTTTBCCCSEEEECGGGHH
T ss_pred CEEEEEC-cCHHHHHHHHHHHhCCC-------eEEEEEccCCH--HHHH----HHHHhCcCcccCccccceEEecHHhHH
Confidence 4899999 69999999999988775 8999998 43 2222 121110 0000 2234444 666
Q ss_pred HHhCCCcEEEEec
Q 019990 77 EACKDVNIAVMVG 89 (332)
Q Consensus 77 ~a~~~aDiVi~~a 89 (332)
++++++|+||++.
T Consensus 67 ~~~~~~D~vi~~v 79 (335)
T 1txg_A 67 KCLENAEVVLLGV 79 (335)
T ss_dssp HHHTTCSEEEECS
T ss_pred HHHhcCCEEEEcC
Confidence 7789999999974
|
| >1ff9_A Saccharopine reductase; lysine biosynthesis, alpha-aminoadipate pathway, dehydrogenase, oxidoreductase; 2.00A {Magnaporthe grisea} SCOP: c.2.1.3 d.81.1.2 PDB: 1e5l_A* 1e5q_A | Back alignment and structure |
|---|
Probab=97.17 E-value=0.00028 Score=67.26 Aligned_cols=77 Identities=9% Similarity=0.121 Sum_probs=47.5
Q ss_pred CcEEEEEcCCChhHHHHHHHHHhcccCCCCCCeEEEEEecccchhhhhhhHhhhhhhccCCccceEEeCCHHHHhCCCcE
Q 019990 5 PLRVLVTGAAGQIGYALVPMIARGIMLGPDQPVILHMLDIEPAAEALNGVKMELIDAAFPLLKGVVATTDVVEACKDVNI 84 (332)
Q Consensus 5 ~~kI~VtGaaG~IGs~l~~~L~~~~~~~~~~~~~i~l~D~~~~~~~~~~~~~dl~~~~~~~~~~v~~~~~~~~a~~~aDi 84 (332)
+++|+|+| +|++|++++..|++.+. +|+++|++. +++......+... .....++....++.++++++|+
T Consensus 3 ~k~VlViG-aG~iG~~ia~~L~~~G~-------~V~v~~R~~--~~a~~la~~~~~~-~~~~~Dv~d~~~l~~~l~~~Dv 71 (450)
T 1ff9_A 3 TKSVLMLG-SGFVTRPTLDVLTDSGI-------KVTVACRTL--ESAKKLSAGVQHS-TPISLDVNDDAALDAEVAKHDL 71 (450)
T ss_dssp CCEEEEEC-CSTTHHHHHHHHHTTTC-------EEEEEESSH--HHHHHTTTTCTTE-EEEECCTTCHHHHHHHHTTSSE
T ss_pred CCEEEEEC-CCHHHHHHHHHHHhCcC-------EEEEEECCH--HHHHHHHHhcCCc-eEEEeecCCHHHHHHHHcCCcE
Confidence 57899999 79999999999998764 799999853 2222111111100 0001122222345567889999
Q ss_pred EEEecCCC
Q 019990 85 AVMVGGFP 92 (332)
Q Consensus 85 Vi~~ag~~ 92 (332)
||++++..
T Consensus 72 VIn~a~~~ 79 (450)
T 1ff9_A 72 VISLIPYT 79 (450)
T ss_dssp EEECCC--
T ss_pred EEECCccc
Confidence 99998753
|
| >3cky_A 2-hydroxymethyl glutarate dehydrogenase; rossmann fold, two domain enzyme, oxidoreductase; 2.30A {Eubacterium barkeri} | Back alignment and structure |
|---|
Probab=97.16 E-value=0.00073 Score=60.50 Aligned_cols=68 Identities=12% Similarity=0.213 Sum_probs=47.3
Q ss_pred CCCCCcEEEEEcCCChhHHHHHHHHHhcccCCCCCCeEEEEEecccchhhhhhhHhhhhhhccCCccceEEeCCHHHHhC
Q 019990 1 MAKNPLRVLVTGAAGQIGYALVPMIARGIMLGPDQPVILHMLDIEPAAEALNGVKMELIDAAFPLLKGVVATTDVVEACK 80 (332)
Q Consensus 1 m~~~~~kI~VtGaaG~IGs~l~~~L~~~~~~~~~~~~~i~l~D~~~~~~~~~~~~~dl~~~~~~~~~~v~~~~~~~~a~~ 80 (332)
|. +++||+|+| +|.+|+.++..|...++ +|.++|++. +... .+.+. .+....+..++++
T Consensus 1 M~-~~~~i~iiG-~G~~G~~~a~~l~~~g~-------~V~~~~~~~--~~~~----~~~~~------g~~~~~~~~~~~~ 59 (301)
T 3cky_A 1 ME-KSIKIGFIG-LGAMGKPMAINLLKEGV-------TVYAFDLME--ANVA----AVVAQ------GAQACENNQKVAA 59 (301)
T ss_dssp ----CCEEEEEC-CCTTHHHHHHHHHHTTC-------EEEEECSSH--HHHH----HHHTT------TCEECSSHHHHHH
T ss_pred CC-CCCEEEEEC-ccHHHHHHHHHHHHCCC-------eEEEEeCCH--HHHH----HHHHC------CCeecCCHHHHHh
Confidence 54 467999999 79999999999988775 899999853 2222 12111 2334456777788
Q ss_pred CCcEEEEec
Q 019990 81 DVNIAVMVG 89 (332)
Q Consensus 81 ~aDiVi~~a 89 (332)
++|+||++.
T Consensus 60 ~~D~vi~~v 68 (301)
T 3cky_A 60 ASDIIFTSL 68 (301)
T ss_dssp HCSEEEECC
T ss_pred CCCEEEEEC
Confidence 999999874
|
| >2g1u_A Hypothetical protein TM1088A; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: AMP; 1.50A {Thermotoga maritima} PDB: 3l4b_A* | Back alignment and structure |
|---|
Probab=97.16 E-value=0.0019 Score=51.93 Aligned_cols=35 Identities=11% Similarity=0.273 Sum_probs=30.1
Q ss_pred CCcEEEEEcCCChhHHHHHHHHHhcccCCCCCCeEEEEEeccc
Q 019990 4 NPLRVLVTGAAGQIGYALVPMIARGIMLGPDQPVILHMLDIEP 46 (332)
Q Consensus 4 ~~~kI~VtGaaG~IGs~l~~~L~~~~~~~~~~~~~i~l~D~~~ 46 (332)
..++|+|+| +|.+|+.++..|...+. +|+++|.+.
T Consensus 18 ~~~~v~IiG-~G~iG~~la~~L~~~g~-------~V~vid~~~ 52 (155)
T 2g1u_A 18 KSKYIVIFG-CGRLGSLIANLASSSGH-------SVVVVDKNE 52 (155)
T ss_dssp CCCEEEEEC-CSHHHHHHHHHHHHTTC-------EEEEEESCG
T ss_pred CCCcEEEEC-CCHHHHHHHHHHHhCCC-------eEEEEECCH
Confidence 357999999 69999999999988775 899999854
|
| >2raf_A Putative dinucleotide-binding oxidoreductase; NP_786167.1, NADP oxidoreductase coenzyme F420-dependent, structural genomics; HET: MSE NAP; 1.60A {Lactobacillus plantarum WCFS1} | Back alignment and structure |
|---|
Probab=97.15 E-value=0.0018 Score=54.89 Aligned_cols=34 Identities=12% Similarity=0.158 Sum_probs=28.7
Q ss_pred CCcEEEEEcCCChhHHHHHHHHHhcccCCCCCCeEEEEEecc
Q 019990 4 NPLRVLVTGAAGQIGYALVPMIARGIMLGPDQPVILHMLDIE 45 (332)
Q Consensus 4 ~~~kI~VtGaaG~IGs~l~~~L~~~~~~~~~~~~~i~l~D~~ 45 (332)
.++||+|+| +|.+|+.++..|.+.+. +|.++|++
T Consensus 18 ~~~~I~iiG-~G~mG~~la~~l~~~g~-------~V~~~~~~ 51 (209)
T 2raf_A 18 QGMEITIFG-KGNMGQAIGHNFEIAGH-------EVTYYGSK 51 (209)
T ss_dssp --CEEEEEC-CSHHHHHHHHHHHHTTC-------EEEEECTT
T ss_pred CCCEEEEEC-CCHHHHHHHHHHHHCCC-------EEEEEcCC
Confidence 468999999 79999999999998775 89999874
|
| >4fgw_A Glycerol-3-phosphate dehydrogenase [NAD(+)] 1; oxidoreductase; 2.45A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=97.15 E-value=0.0019 Score=60.15 Aligned_cols=110 Identities=21% Similarity=0.299 Sum_probs=66.7
Q ss_pred CCcEEEEEcCCChhHHHHHHHHHhcccC-CCCCCeEEEEEecccchhhhhhhHhhh--hhhc------cCCccceEEeCC
Q 019990 4 NPLRVLVTGAAGQIGYALVPMIARGIML-GPDQPVILHMLDIEPAAEALNGVKMEL--IDAA------FPLLKGVVATTD 74 (332)
Q Consensus 4 ~~~kI~VtGaaG~IGs~l~~~L~~~~~~-~~~~~~~i~l~D~~~~~~~~~~~~~dl--~~~~------~~~~~~v~~~~~ 74 (332)
+|.||+|+| +|.=|++|+..|.+++.- ......+|.+..+++.. ..+.....+ .|.+ ..+..++..+.|
T Consensus 33 ~p~KI~ViG-aGsWGTALA~~la~ng~~~~~~~~~~V~lw~r~~e~-~~~~~~e~in~~~~N~~YLpgv~Lp~~i~~t~d 110 (391)
T 4fgw_A 33 KPFKVTVIG-SGNWGTTIAKVVAENCKGYPEVFAPIVQMWVFEEEI-NGEKLTEIINTRHQNVKYLPGITLPDNLVANPD 110 (391)
T ss_dssp CCEEEEEEC-CSHHHHHHHHHHHHHHHHCTTTEEEEEEEECCCCBS-SSCBHHHHHTTTCCBTTTBTTCCCCSSEEEESC
T ss_pred CCCeEEEEC-cCHHHHHHHHHHHHcCCCccccCCceEEEEEcchHh-hhHHHHHHHHhcCcCcccCCCCcCCCCcEEeCC
Confidence 467999999 699999999999876420 00001258887764310 001111112 2222 123467888899
Q ss_pred HHHHhCCCcEEEEecCCCCCCCCChhHHHhhhHHHHHHHHHHHHhhcCCCcEEEEEe
Q 019990 75 VVEACKDVNIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEKHAAPNCKVLVVA 131 (332)
Q Consensus 75 ~~~a~~~aDiVi~~ag~~~~~~~~~~~~~~~N~~~~~~i~~~i~~~~~~~~~viv~s 131 (332)
+.++++++|+||+.. |. +.++.+++.++.+-.++..+|.++
T Consensus 111 l~~al~~ad~ii~av--Ps--------------~~~r~~l~~l~~~~~~~~~iv~~~ 151 (391)
T 4fgw_A 111 LIDSVKDVDIIVFNI--PH--------------QFLPRICSQLKGHVDSHVRAISCL 151 (391)
T ss_dssp HHHHHTTCSEEEECS--CG--------------GGHHHHHHHHTTTSCTTCEEEECC
T ss_pred HHHHHhcCCEEEEEC--Ch--------------hhhHHHHHHhccccCCCceeEEec
Confidence 999999999999852 21 224566777776654555555444
|
| >2ahr_A Putative pyrroline carboxylate reductase; pyrroline reductase, proline biosynthesis, NAD(P protein, rossmann fold, doain swapping; HET: NAP; 2.15A {Streptococcus pyogenes} SCOP: a.100.1.10 c.2.1.6 PDB: 2amf_A | Back alignment and structure |
|---|
Probab=97.14 E-value=0.00073 Score=59.20 Aligned_cols=67 Identities=12% Similarity=0.184 Sum_probs=46.3
Q ss_pred CCcEEEEEcCCChhHHHHHHHHHhcccCCCCCCeEEEEEecccchhhhhhhHhhhhhhccCCccceEEeCCHHHHhCCCc
Q 019990 4 NPLRVLVTGAAGQIGYALVPMIARGIMLGPDQPVILHMLDIEPAAEALNGVKMELIDAAFPLLKGVVATTDVVEACKDVN 83 (332)
Q Consensus 4 ~~~kI~VtGaaG~IGs~l~~~L~~~~~~~~~~~~~i~l~D~~~~~~~~~~~~~dl~~~~~~~~~~v~~~~~~~~a~~~aD 83 (332)
+||||+|+| +|.+|+.++..|...+. ++.++|++. ++.......+ .+....+..++++++|
T Consensus 2 ~~m~i~iiG-~G~mG~~~a~~l~~~g~-------~v~~~~~~~--~~~~~~~~~~---------g~~~~~~~~~~~~~~D 62 (259)
T 2ahr_A 2 NAMKIGIIG-VGKMASAIIKGLKQTPH-------ELIISGSSL--ERSKEIAEQL---------ALPYAMSHQDLIDQVD 62 (259)
T ss_dssp -CCEEEEEC-CSHHHHHHHHHHTTSSC-------EEEEECSSH--HHHHHHHHHH---------TCCBCSSHHHHHHTCS
T ss_pred CccEEEEEC-CCHHHHHHHHHHHhCCC-------eEEEECCCH--HHHHHHHHHc---------CCEeeCCHHHHHhcCC
Confidence 567999999 79999999999987664 799999853 2222111111 1222356677788999
Q ss_pred EEEEec
Q 019990 84 IAVMVG 89 (332)
Q Consensus 84 iVi~~a 89 (332)
+||++.
T Consensus 63 ~Vi~~v 68 (259)
T 2ahr_A 63 LVILGI 68 (259)
T ss_dssp EEEECS
T ss_pred EEEEEe
Confidence 999875
|
| >2g5c_A Prephenate dehydrogenase; TYRA, oxidoreductase; HET: NAD; 1.90A {Aquifex aeolicus} SCOP: a.100.1.12 c.2.1.6 | Back alignment and structure |
|---|
Probab=97.12 E-value=0.0071 Score=53.44 Aligned_cols=69 Identities=19% Similarity=0.273 Sum_probs=45.6
Q ss_pred CcEEEEEcCCChhHHHHHHHHHhcccCCCCCCeEEEEEecccchhhhhhhHhhhhhhccCCccceEEeCCHHHHhC-CCc
Q 019990 5 PLRVLVTGAAGQIGYALVPMIARGIMLGPDQPVILHMLDIEPAAEALNGVKMELIDAAFPLLKGVVATTDVVEACK-DVN 83 (332)
Q Consensus 5 ~~kI~VtGaaG~IGs~l~~~L~~~~~~~~~~~~~i~l~D~~~~~~~~~~~~~dl~~~~~~~~~~v~~~~~~~~a~~-~aD 83 (332)
|+||+|+| +|.+|+.++..|...++. .+|.++|++. +.+.. +..... . .....+..++++ ++|
T Consensus 1 m~~I~iIG-~G~mG~~~a~~l~~~g~~-----~~V~~~d~~~--~~~~~----~~~~g~---~-~~~~~~~~~~~~~~aD 64 (281)
T 2g5c_A 1 MQNVLIVG-VGFMGGSFAKSLRRSGFK-----GKIYGYDINP--ESISK----AVDLGI---I-DEGTTSIAKVEDFSPD 64 (281)
T ss_dssp CCEEEEES-CSHHHHHHHHHHHHTTCC-----SEEEEECSCH--HHHHH----HHHTTS---C-SEEESCGGGGGGTCCS
T ss_pred CcEEEEEe-cCHHHHHHHHHHHhcCCC-----cEEEEEeCCH--HHHHH----HHHCCC---c-ccccCCHHHHhcCCCC
Confidence 46899999 799999999999887641 2789999853 22221 111100 0 112345667788 999
Q ss_pred EEEEec
Q 019990 84 IAVMVG 89 (332)
Q Consensus 84 iVi~~a 89 (332)
+||++.
T Consensus 65 vVilav 70 (281)
T 2g5c_A 65 FVMLSS 70 (281)
T ss_dssp EEEECS
T ss_pred EEEEcC
Confidence 999874
|
| >2f1k_A Prephenate dehydrogenase; tyrosine synthesis, X-RA crystallography structure, oxidoreductase; HET: OMT NAP; 1.55A {Synechocystis SP} SCOP: a.100.1.12 c.2.1.6 | Back alignment and structure |
|---|
Probab=97.11 E-value=0.0065 Score=53.57 Aligned_cols=65 Identities=17% Similarity=0.180 Sum_probs=44.4
Q ss_pred cEEEEEcCCChhHHHHHHHHHhcccCCCCCCeEEEEEecccchhhhhhhHhhhhhhccCCccceEEeCCHHHHhCCCcEE
Q 019990 6 LRVLVTGAAGQIGYALVPMIARGIMLGPDQPVILHMLDIEPAAEALNGVKMELIDAAFPLLKGVVATTDVVEACKDVNIA 85 (332)
Q Consensus 6 ~kI~VtGaaG~IGs~l~~~L~~~~~~~~~~~~~i~l~D~~~~~~~~~~~~~dl~~~~~~~~~~v~~~~~~~~a~~~aDiV 85 (332)
|||+|+| +|.+|+.++..|...++ +|.++|++. +.+.. +..... . .....++.++ +++|+|
T Consensus 1 m~i~iiG-~G~~G~~~a~~l~~~g~-------~V~~~~~~~--~~~~~----~~~~g~---~-~~~~~~~~~~-~~~D~v 61 (279)
T 2f1k_A 1 MKIGVVG-LGLIGASLAGDLRRRGH-------YLIGVSRQQ--STCEK----AVERQL---V-DEAGQDLSLL-QTAKII 61 (279)
T ss_dssp CEEEEEC-CSHHHHHHHHHHHHTTC-------EEEEECSCH--HHHHH----HHHTTS---C-SEEESCGGGG-TTCSEE
T ss_pred CEEEEEc-CcHHHHHHHHHHHHCCC-------EEEEEECCH--HHHHH----HHhCCC---C-ccccCCHHHh-CCCCEE
Confidence 4899999 79999999999988775 899999853 22221 111110 0 1224556666 899999
Q ss_pred EEec
Q 019990 86 VMVG 89 (332)
Q Consensus 86 i~~a 89 (332)
|++.
T Consensus 62 i~av 65 (279)
T 2f1k_A 62 FLCT 65 (279)
T ss_dssp EECS
T ss_pred EEEC
Confidence 9874
|
| >1wdk_A Fatty oxidation complex alpha subunit; alpha2BETA2 heterotetrameric complex, lyase, oxidoreductase/transferase complex, lyase; HET: ACO NAD N8E; 2.50A {Pseudomonas fragi} SCOP: a.100.1.3 a.100.1.3 c.2.1.6 c.14.1.3 PDB: 1wdl_A* 1wdm_A* 2d3t_A* | Back alignment and structure |
|---|
Probab=97.11 E-value=0.001 Score=67.08 Aligned_cols=102 Identities=20% Similarity=0.213 Sum_probs=62.3
Q ss_pred CCcEEEEEcCCChhHHHHHHHHHhcccCCCCCCeEEEEEecccchhhhhhh---Hhh-hhhhccC----------Cccce
Q 019990 4 NPLRVLVTGAAGQIGYALVPMIARGIMLGPDQPVILHMLDIEPAAEALNGV---KME-LIDAAFP----------LLKGV 69 (332)
Q Consensus 4 ~~~kI~VtGaaG~IGs~l~~~L~~~~~~~~~~~~~i~l~D~~~~~~~~~~~---~~d-l~~~~~~----------~~~~v 69 (332)
+.+||+|+| +|.+|+.++..|+..|+ +|+++|++. +.+..- ..+ +...... ....+
T Consensus 313 ~i~kV~VIG-aG~MG~~iA~~la~aG~-------~V~l~D~~~--~~~~~~~~~i~~~l~~~~~~G~~~~~~~~~~~~~i 382 (715)
T 1wdk_A 313 DVKQAAVLG-AGIMGGGIAYQSASKGT-------PILMKDINE--HGIEQGLAEAAKLLVGRVDKGRMTPAKMAEVLNGI 382 (715)
T ss_dssp CCSSEEEEC-CHHHHHHHHHHHHHTTC-------CEEEECSSH--HHHHHHHHHHHHHHHHHHTTTSSCHHHHHHHHHHE
T ss_pred cCCEEEEEC-CChhhHHHHHHHHhCCC-------EEEEEECCH--HHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHhcCe
Confidence 457899999 69999999999998886 899999864 222211 000 1000000 01235
Q ss_pred EEeCCHHHHhCCCcEEEEecCCCCCCCCChhHHHhhhHHHHHHHHHHHHhhcCCCcEEEEEeC
Q 019990 70 VATTDVVEACKDVNIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEKHAAPNCKVLVVAN 132 (332)
Q Consensus 70 ~~~~~~~~a~~~aDiVi~~ag~~~~~~~~~~~~~~~N~~~~~~i~~~i~~~~~~~~~viv~sn 132 (332)
+..+++ +++++||+||.+.- + +....+.+...+..+.+++.. ++||
T Consensus 383 ~~~~d~-~~~~~aDlVIeaV~------e--------~~~vk~~v~~~l~~~~~~~~I--lasn 428 (715)
T 1wdk_A 383 RPTLSY-GDFGNVDLVVEAVV------E--------NPKVKQAVLAEVENHVREDAI--LASN 428 (715)
T ss_dssp EEESSS-TTGGGCSEEEECCC------S--------CHHHHHHHHHHHHTTSCTTCE--EEEC
T ss_pred EEECCH-HHHCCCCEEEEcCC------C--------CHHHHHHHHHHHHhhCCCCeE--EEeC
Confidence 556666 77899999998741 1 122234555666676655553 3444
|
| >3ojo_A CAP5O; rossmann fold, complex with cofactor NAD and EU(PDC)3, oxidi conformation, oxidoreductase; HET: NAD PDC; 2.50A {Staphylococcus aureus} PDB: 3ojl_A* | Back alignment and structure |
|---|
Probab=97.11 E-value=0.0069 Score=57.14 Aligned_cols=105 Identities=14% Similarity=0.198 Sum_probs=64.3
Q ss_pred CcEEEEEcCCChhHHHHHHHHHhcccCCCCCCeEEEEEecccchhhhhhhHhhhhhhccCC--------------ccceE
Q 019990 5 PLRVLVTGAAGQIGYALVPMIARGIMLGPDQPVILHMLDIEPAAEALNGVKMELIDAAFPL--------------LKGVV 70 (332)
Q Consensus 5 ~~kI~VtGaaG~IGs~l~~~L~~~~~~~~~~~~~i~l~D~~~~~~~~~~~~~dl~~~~~~~--------------~~~v~ 70 (332)
..|..|+| .|++|..++..|++.|+ +|+.+|++. ++.. .+.....+. ..++.
T Consensus 11 ~~~~~ViG-lGyvGlp~A~~La~~G~-------~V~~~D~~~--~kv~----~L~~g~~pi~epgl~~ll~~~~~~g~l~ 76 (431)
T 3ojo_A 11 GSKLTVVG-LGYIGLPTSIMFAKHGV-------DVLGVDINQ--QTID----KLQNGQISIEEPGLQEVYEEVLSSGKLK 76 (431)
T ss_dssp -CEEEEEC-CSTTHHHHHHHHHHTTC-------EEEEECSCH--HHHH----HHHTTCCSSCCTTHHHHHHHHHHTTCEE
T ss_pred CCccEEEe-eCHHHHHHHHHHHHCCC-------EEEEEECCH--HHHH----HHHCCCCCcCCCCHHHHHHhhcccCceE
Confidence 46899999 79999999999999886 899999964 2332 222211110 13455
Q ss_pred EeCCHHHHhCCCcEEEEecCCCCCCCCChhHHHhhhHHHHHHHHHHHHhhcCCCcEEEEEe
Q 019990 71 ATTDVVEACKDVNIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEKHAAPNCKVLVVA 131 (332)
Q Consensus 71 ~~~~~~~a~~~aDiVi~~ag~~~~~~~~~~~~~~~N~~~~~~i~~~i~~~~~~~~~viv~s 131 (332)
.+++ +++||+||++.+.|...... -..++..+....+.+.++..++..+|..|
T Consensus 77 ~ttd----~~~aDvvii~VpTp~~~~~~----~~~Dl~~V~~~~~~i~~~l~~g~iVV~~S 129 (431)
T 3ojo_A 77 VSTT----PEASDVFIIAVPTPNNDDQY----RSCDISLVMRALDSILPFLKKGNTIIVES 129 (431)
T ss_dssp EESS----CCCCSEEEECCCCCBCSSSS----CBBCCHHHHHHHHHHGGGCCTTEEEEECS
T ss_pred EeCc----hhhCCEEEEEeCCCcccccc----CCccHHHHHHHHHHHHHhCCCCCEEEEec
Confidence 5555 45899999988766532100 01224445566666766654554444433
|
| >2vns_A Metalloreductase steap3; metal-binding, transmembrane, rossmann fold, transport, cell cycle, transferrin, flavoprotein, alternative splicing; HET: CIT; 2.0A {Homo sapiens} PDB: 2vq3_A* | Back alignment and structure |
|---|
Probab=97.09 E-value=0.0013 Score=56.19 Aligned_cols=66 Identities=14% Similarity=0.112 Sum_probs=45.5
Q ss_pred CCcEEEEEcCCChhHHHHHHHHHhcccCCCCCCeEEEEEecccchhhhhhhHhhhhhhccCCccceEEeCCHHHHhCCCc
Q 019990 4 NPLRVLVTGAAGQIGYALVPMIARGIMLGPDQPVILHMLDIEPAAEALNGVKMELIDAAFPLLKGVVATTDVVEACKDVN 83 (332)
Q Consensus 4 ~~~kI~VtGaaG~IGs~l~~~L~~~~~~~~~~~~~i~l~D~~~~~~~~~~~~~dl~~~~~~~~~~v~~~~~~~~a~~~aD 83 (332)
+++||+|+| +|.+|+.++..|...++ +|.++|++. +... .+... .+... +..++++++|
T Consensus 27 ~~~~I~iiG-~G~~G~~la~~l~~~g~-------~V~~~~r~~--~~~~----~~~~~------g~~~~-~~~~~~~~~D 85 (215)
T 2vns_A 27 EAPKVGILG-SGDFARSLATRLVGSGF-------KVVVGSRNP--KRTA----RLFPS------AAQVT-FQEEAVSSPE 85 (215)
T ss_dssp --CCEEEEC-CSHHHHHHHHHHHHTTC-------CEEEEESSH--HHHH----HHSBT------TSEEE-EHHHHTTSCS
T ss_pred CCCEEEEEc-cCHHHHHHHHHHHHCCC-------EEEEEeCCH--HHHH----HHHHc------CCcee-cHHHHHhCCC
Confidence 457899999 79999999999988775 788999753 2221 12111 12222 5667789999
Q ss_pred EEEEecC
Q 019990 84 IAVMVGG 90 (332)
Q Consensus 84 iVi~~ag 90 (332)
+||++..
T Consensus 86 vVi~av~ 92 (215)
T 2vns_A 86 VIFVAVF 92 (215)
T ss_dssp EEEECSC
T ss_pred EEEECCC
Confidence 9998753
|
| >1zej_A HBD-9, 3-hydroxyacyl-COA dehydrogenase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI; HET: PE8; 2.00A {Archaeoglobus fulgidus} | Back alignment and structure |
|---|
Probab=97.09 E-value=0.0024 Score=57.16 Aligned_cols=70 Identities=26% Similarity=0.381 Sum_probs=48.2
Q ss_pred CcEEEEEcCCChhHHHHHHHHHhcccCCCCCCeEEEEEecccchhhhhhhHhhhhhhccCCccceEEeCCHHHHhCCCcE
Q 019990 5 PLRVLVTGAAGQIGYALVPMIARGIMLGPDQPVILHMLDIEPAAEALNGVKMELIDAAFPLLKGVVATTDVVEACKDVNI 84 (332)
Q Consensus 5 ~~kI~VtGaaG~IGs~l~~~L~~~~~~~~~~~~~i~l~D~~~~~~~~~~~~~dl~~~~~~~~~~v~~~~~~~~a~~~aDi 84 (332)
-+||+|+| +|.+|+.++..|+ .|+ +|+++|++. +.+......+.+ .....++..+++.+ +++||+
T Consensus 12 ~~~V~vIG-~G~MG~~iA~~la-aG~-------~V~v~d~~~--~~~~~~~~~l~~---~~~~~i~~~~~~~~-~~~aDl 76 (293)
T 1zej_A 12 HMKVFVIG-AGLMGRGIAIAIA-SKH-------EVVLQDVSE--KALEAAREQIPE---ELLSKIEFTTTLEK-VKDCDI 76 (293)
T ss_dssp CCEEEEEC-CSHHHHHHHHHHH-TTS-------EEEEECSCH--HHHHHHHHHSCG---GGGGGEEEESSCTT-GGGCSE
T ss_pred CCeEEEEe-eCHHHHHHHHHHH-cCC-------EEEEEECCH--HHHHHHHHHHHH---HHhCCeEEeCCHHH-HcCCCE
Confidence 47899999 7999999999999 886 899999864 233221111111 01234555566654 899999
Q ss_pred EEEec
Q 019990 85 AVMVG 89 (332)
Q Consensus 85 Vi~~a 89 (332)
||.+.
T Consensus 77 Vieav 81 (293)
T 1zej_A 77 VMEAV 81 (293)
T ss_dssp EEECC
T ss_pred EEEcC
Confidence 99864
|
| >2cvz_A Dehydrogenase, 3-hydroxyisobutyrate dehydrogenase; valine catabolism, NADP+, structural GEN riken structural genomics/proteomics initiative; HET: NDP; 1.80A {Thermus thermophilus} SCOP: a.100.1.1 c.2.1.6 PDB: 1wp4_A* | Back alignment and structure |
|---|
Probab=97.08 E-value=0.0026 Score=56.39 Aligned_cols=63 Identities=14% Similarity=0.120 Sum_probs=42.6
Q ss_pred CcEEEEEcCCChhHHHHHHHHHhcccCCCCCCeEEEEEecccchhhhhhhHhhhhhhccCCccceEEeCCHHHHhCCCcE
Q 019990 5 PLRVLVTGAAGQIGYALVPMIARGIMLGPDQPVILHMLDIEPAAEALNGVKMELIDAAFPLLKGVVATTDVVEACKDVNI 84 (332)
Q Consensus 5 ~~kI~VtGaaG~IGs~l~~~L~~~~~~~~~~~~~i~l~D~~~~~~~~~~~~~dl~~~~~~~~~~v~~~~~~~~a~~~aDi 84 (332)
||||+|+| +|.+|+.++..|.. ++ +|.++|++. ++... +.... +.... ..++++++|+
T Consensus 1 M~~i~iiG-~G~~G~~~a~~l~~-g~-------~V~~~~~~~--~~~~~----~~~~g------~~~~~-~~~~~~~~D~ 58 (289)
T 2cvz_A 1 MEKVAFIG-LGAMGYPMAGHLAR-RF-------PTLVWNRTF--EKALR----HQEEF------GSEAV-PLERVAEARV 58 (289)
T ss_dssp -CCEEEEC-CSTTHHHHHHHHHT-TS-------CEEEECSST--HHHHH----HHHHH------CCEEC-CGGGGGGCSE
T ss_pred CCeEEEEc-ccHHHHHHHHHHhC-CC-------eEEEEeCCH--HHHHH----HHHCC------CcccC-HHHHHhCCCE
Confidence 35899999 79999999999988 75 789999864 22221 11111 11122 4566789999
Q ss_pred EEEec
Q 019990 85 AVMVG 89 (332)
Q Consensus 85 Vi~~a 89 (332)
||++.
T Consensus 59 vi~~v 63 (289)
T 2cvz_A 59 IFTCL 63 (289)
T ss_dssp EEECC
T ss_pred EEEeC
Confidence 99874
|
| >1dih_A Dihydrodipicolinate reductase; oxidoreductase; HET: NDP; 2.20A {Escherichia coli} SCOP: c.2.1.3 d.81.1.3 PDB: 1arz_A* 1dru_A* 1drv_A* 1drw_A* | Back alignment and structure |
|---|
Probab=97.08 E-value=0.00034 Score=62.11 Aligned_cols=79 Identities=23% Similarity=0.243 Sum_probs=47.4
Q ss_pred CCCCCcEEEEEcCCChhHHHHHHHHHhcccCCCCCCeEEE-EEecccchhhhhhhHhhhhhhccCCccceEEeCCHHHHh
Q 019990 1 MAKNPLRVLVTGAAGQIGYALVPMIARGIMLGPDQPVILH-MLDIEPAAEALNGVKMELIDAAFPLLKGVVATTDVVEAC 79 (332)
Q Consensus 1 m~~~~~kI~VtGaaG~IGs~l~~~L~~~~~~~~~~~~~i~-l~D~~~~~~~~~~~~~dl~~~~~~~~~~v~~~~~~~~a~ 79 (332)
|+++++||+|+|++|++|+.++..+.+..- .+++ ++|.+.. ...+ .|+.........++....++.+.+
T Consensus 1 ~~~~~mkV~V~Ga~G~mG~~~~~~~~~~~~------~elva~~d~~~~--~~~g--~d~~~~~g~~~~~v~~~~dl~~~l 70 (273)
T 1dih_A 1 MHDANIRVAIAGAGGRMGRQLIQAALALEG------VQLGAALEREGS--SLLG--SDAGELAGAGKTGVTVQSSLDAVK 70 (273)
T ss_dssp -CCCBEEEEETTTTSHHHHHHHHHHHHSTT------EECCCEECCTTC--TTCS--CCTTCSSSSSCCSCCEESCSTTTT
T ss_pred CCCCCcEEEEECCCCHHHHHHHHHHHhCCC------CEEEEEEecCch--hhhh--hhHHHHcCCCcCCceecCCHHHHh
Confidence 787789999999889999999998875321 2554 6776431 1111 121111000012344456666777
Q ss_pred CCCcEEEEec
Q 019990 80 KDVNIAVMVG 89 (332)
Q Consensus 80 ~~aDiVi~~a 89 (332)
+++|+||..+
T Consensus 71 ~~~DvVIDft 80 (273)
T 1dih_A 71 DDFDVFIDFT 80 (273)
T ss_dssp TSCSEEEECS
T ss_pred cCCCEEEEcC
Confidence 8899999553
|
| >2zyd_A 6-phosphogluconate dehydrogenase, decarboxylating; NADP, pentose phosphate pathway, oxidoreductase, 6-phosphogl dehydrogenase; HET: GLO; 1.50A {Escherichia coli} PDB: 2zya_A* 3fwn_A* 2zyg_A 2w8z_A* 2w90_A* | Back alignment and structure |
|---|
Probab=97.03 E-value=0.0059 Score=58.56 Aligned_cols=70 Identities=19% Similarity=0.183 Sum_probs=48.4
Q ss_pred CCcEEEEEcCCChhHHHHHHHHHhcccCCCCCCeEEEEEecccchhhhhhhHhhhhhhccCCccceEEeCCHHHHhCC--
Q 019990 4 NPLRVLVTGAAGQIGYALVPMIARGIMLGPDQPVILHMLDIEPAAEALNGVKMELIDAAFPLLKGVVATTDVVEACKD-- 81 (332)
Q Consensus 4 ~~~kI~VtGaaG~IGs~l~~~L~~~~~~~~~~~~~i~l~D~~~~~~~~~~~~~dl~~~~~~~~~~v~~~~~~~~a~~~-- 81 (332)
.++||+|+| +|.+|++++..|.+.|+ +|.++|++. +++. ++.... . ...+....++.+++++
T Consensus 14 ~~~~IgvIG-lG~MG~~lA~~La~~G~-------~V~v~~r~~--~~~~----~l~~~~-~-~~gi~~~~s~~e~v~~l~ 77 (480)
T 2zyd_A 14 SKQQIGVVG-MAVMGRNLALNIESRGY-------TVSIFNRSR--EKTE----EVIAEN-P-GKKLVPYYTVKEFVESLE 77 (480)
T ss_dssp -CBSEEEEC-CSHHHHHHHHHHHTTTC-------CEEEECSSH--HHHH----HHHHHS-T-TSCEEECSSHHHHHHTBC
T ss_pred CCCeEEEEc-cHHHHHHHHHHHHhCCC-------eEEEEeCCH--HHHH----HHHhhC-C-CCCeEEeCCHHHHHhCCC
Confidence 356899999 79999999999998876 799999853 2222 221110 0 0135556677777766
Q ss_pred -CcEEEEec
Q 019990 82 -VNIAVMVG 89 (332)
Q Consensus 82 -aDiVi~~a 89 (332)
+|+||++.
T Consensus 78 ~aDvVil~V 86 (480)
T 2zyd_A 78 TPRRILLMV 86 (480)
T ss_dssp SSCEEEECS
T ss_pred CCCEEEEEC
Confidence 99999874
|
| >3lt0_A Enoyl-ACP reductase; triclosan, triclosan variant, oxidoredu P.falciparum; HET: NAD FT1; 1.96A {Plasmodium falciparum} SCOP: c.2.1.2 PDB: 1v35_A* 3lsy_A* 1uh5_A* 3lt1_A* 3lt2_A* 3lt4_A* 3am4_A* 3am3_A* 3am5_A* 2o2y_A* 2oos_A* 2ol4_A* 2op0_A* 2op1_A* 1vrw_A* 1zsn_A* 1zw1_A* 1zxb_A* 1zxl_A* 2foi_A* ... | Back alignment and structure |
|---|
Probab=97.03 E-value=0.0012 Score=59.97 Aligned_cols=84 Identities=13% Similarity=0.146 Sum_probs=50.8
Q ss_pred CCCcEEEEecCCCC---CC--CCCh---hHHHhhhHHHHHHHHHHHHhhcCCCcEEEEEeCChhhHHHHHHHHCCCCCCC
Q 019990 80 KDVNIAVMVGGFPR---KE--GMER---KDVMSKNVSIYKAQASALEKHAAPNCKVLVVANPANTNALILKEFAPSIPAK 151 (332)
Q Consensus 80 ~~aDiVi~~ag~~~---~~--~~~~---~~~~~~N~~~~~~i~~~i~~~~~~~~~viv~snp~~~~~~~~~~~~~~~~~~ 151 (332)
...|++|+.||+.. .+ ..+. ...+..|+.....+.+.+..+-...+++|++|+.... .+.+..
T Consensus 112 g~iDilVnnAGi~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~p~m~~~g~Iv~isS~~~~---------~~~~~~ 182 (329)
T 3lt0_A 112 GKINMLVHSLANAKEVQKDLLNTSRKGYLDALSKSSYSLISLCKYFVNIMKPQSSIISLTYHASQ---------KVVPGY 182 (329)
T ss_dssp CCEEEEEECCCCCTTTTSCGGGCCHHHHHHHHHHHTHHHHHHHHHHGGGEEEEEEEEEEECGGGT---------SCCTTC
T ss_pred CCCcEEEECCcccccCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHhhCCeEEEEeCcccc---------CCCCcc
Confidence 36799999998631 11 1222 2356778877777777766653223577777764321 123333
Q ss_pred c-EEEeecccHHHHHHHHHHHc
Q 019990 152 N-ITCLTRLDHNRAMGQISERL 172 (332)
Q Consensus 152 ~-i~~~t~l~~~r~~~~~a~~~ 172 (332)
. .|+.+|.....+.+.++..+
T Consensus 183 ~~~Y~asKaal~~~~~~la~el 204 (329)
T 3lt0_A 183 GGGMSSAKAALESDTRVLAYHL 204 (329)
T ss_dssp TTTHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHh
Confidence 2 56777777777777777665
|
| >2uyy_A N-PAC protein; long-chain dehydrogenase, cytokine; HET: NA7; 2.5A {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.02 E-value=0.0015 Score=59.04 Aligned_cols=65 Identities=14% Similarity=0.157 Sum_probs=46.7
Q ss_pred CcEEEEEcCCChhHHHHHHHHHhcccCCCCCCeEEEEEecccchhhhhhhHhhhhhhccCCccceEEeCCHHHHhCCCcE
Q 019990 5 PLRVLVTGAAGQIGYALVPMIARGIMLGPDQPVILHMLDIEPAAEALNGVKMELIDAAFPLLKGVVATTDVVEACKDVNI 84 (332)
Q Consensus 5 ~~kI~VtGaaG~IGs~l~~~L~~~~~~~~~~~~~i~l~D~~~~~~~~~~~~~dl~~~~~~~~~~v~~~~~~~~a~~~aDi 84 (332)
++||+|+| +|.+|+.++..|...++ +|.++|++. +.+.. +... .+....+..++++++|+
T Consensus 30 ~~~I~iIG-~G~mG~~~a~~l~~~g~-------~V~~~~~~~--~~~~~----~~~~------g~~~~~~~~~~~~~~Dv 89 (316)
T 2uyy_A 30 DKKIGFLG-LGLMGSGIVSNLLKMGH-------TVTVWNRTA--EKCDL----FIQE------GARLGRTPAEVVSTCDI 89 (316)
T ss_dssp SSCEEEEC-CSHHHHHHHHHHHHTTC-------CEEEECSSG--GGGHH----HHHT------TCEECSCHHHHHHHCSE
T ss_pred CCeEEEEc-ccHHHHHHHHHHHhCCC-------EEEEEeCCH--HHHHH----HHHc------CCEEcCCHHHHHhcCCE
Confidence 47899999 79999999999988775 789999864 22221 2111 12334567777889999
Q ss_pred EEEec
Q 019990 85 AVMVG 89 (332)
Q Consensus 85 Vi~~a 89 (332)
||.+.
T Consensus 90 Vi~av 94 (316)
T 2uyy_A 90 TFACV 94 (316)
T ss_dssp EEECC
T ss_pred EEEeC
Confidence 99874
|
| >3obb_A Probable 3-hydroxyisobutyrate dehydrogenase; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics; HET: EPE; 2.20A {Pseudomonas aeruginosa} PDB: 3q3c_A* | Back alignment and structure |
|---|
Probab=97.02 E-value=0.0022 Score=57.64 Aligned_cols=66 Identities=17% Similarity=0.360 Sum_probs=49.5
Q ss_pred CCcEEEEEcCCChhHHHHHHHHHhcccCCCCCCeEEEEEecccchhhhhhhHhhhhhhccCCccceEEeCCHHHHhCCCc
Q 019990 4 NPLRVLVTGAAGQIGYALVPMIARGIMLGPDQPVILHMLDIEPAAEALNGVKMELIDAAFPLLKGVVATTDVVEACKDVN 83 (332)
Q Consensus 4 ~~~kI~VtGaaG~IGs~l~~~L~~~~~~~~~~~~~i~l~D~~~~~~~~~~~~~dl~~~~~~~~~~v~~~~~~~~a~~~aD 83 (332)
+|+||.+|| .|.+|+.++.+|++.|+ +++.+|++. ++.+ .+... ......+..++.+++|
T Consensus 2 ~M~kIgfIG-lG~MG~~mA~~L~~~G~-------~v~v~dr~~--~~~~----~l~~~------Ga~~a~s~~e~~~~~d 61 (300)
T 3obb_A 2 HMKQIAFIG-LGHMGAPMATNLLKAGY-------LLNVFDLVQ--SAVD----GLVAA------GASAARSARDAVQGAD 61 (300)
T ss_dssp -CCEEEEEC-CSTTHHHHHHHHHHTTC-------EEEEECSSH--HHHH----HHHHT------TCEECSSHHHHHTTCS
T ss_pred CcCEEEEee-ehHHHHHHHHHHHhCCC-------eEEEEcCCH--HHHH----HHHHc------CCEEcCCHHHHHhcCC
Confidence 467999999 89999999999999886 899999863 2222 23221 2344567788899999
Q ss_pred EEEEec
Q 019990 84 IAVMVG 89 (332)
Q Consensus 84 iVi~~a 89 (332)
+||.+-
T Consensus 62 vv~~~l 67 (300)
T 3obb_A 62 VVISML 67 (300)
T ss_dssp EEEECC
T ss_pred ceeecC
Confidence 999864
|
| >3l6d_A Putative oxidoreductase; structural genomics, protein structure initiative, oxidoredu PSI-2; HET: MSE; 1.90A {Pseudomonas putida} | Back alignment and structure |
|---|
Probab=97.01 E-value=0.0013 Score=59.36 Aligned_cols=65 Identities=18% Similarity=0.243 Sum_probs=48.3
Q ss_pred CcEEEEEcCCChhHHHHHHHHHhcccCCCCCCeEEEEEecccchhhhhhhHhhhhhhccCCccceEEeCCHHHHhCCCcE
Q 019990 5 PLRVLVTGAAGQIGYALVPMIARGIMLGPDQPVILHMLDIEPAAEALNGVKMELIDAAFPLLKGVVATTDVVEACKDVNI 84 (332)
Q Consensus 5 ~~kI~VtGaaG~IGs~l~~~L~~~~~~~~~~~~~i~l~D~~~~~~~~~~~~~dl~~~~~~~~~~v~~~~~~~~a~~~aDi 84 (332)
++||+|+| .|.+|+.++..|++.++ +|.++|++. +++. .+... ......+..++++++|+
T Consensus 9 ~~~IgiIG-~G~mG~~~A~~l~~~G~-------~V~~~dr~~--~~~~----~~~~~------g~~~~~~~~e~~~~aDv 68 (306)
T 3l6d_A 9 EFDVSVIG-LGAMGTIMAQVLLKQGK-------RVAIWNRSP--GKAA----ALVAA------GAHLCESVKAALSASPA 68 (306)
T ss_dssp SCSEEEEC-CSHHHHHHHHHHHHTTC-------CEEEECSSH--HHHH----HHHHH------TCEECSSHHHHHHHSSE
T ss_pred CCeEEEEC-CCHHHHHHHHHHHHCCC-------EEEEEeCCH--HHHH----HHHHC------CCeecCCHHHHHhcCCE
Confidence 57899999 79999999999998886 799999864 2222 12211 23345677888899999
Q ss_pred EEEec
Q 019990 85 AVMVG 89 (332)
Q Consensus 85 Vi~~a 89 (332)
||.+.
T Consensus 69 Vi~~v 73 (306)
T 3l6d_A 69 TIFVL 73 (306)
T ss_dssp EEECC
T ss_pred EEEEe
Confidence 99874
|
| >3gt0_A Pyrroline-5-carboxylate reductase; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG; 2.00A {Bacillus cereus atcc 14579} | Back alignment and structure |
|---|
Probab=97.00 E-value=0.0012 Score=57.39 Aligned_cols=70 Identities=19% Similarity=0.288 Sum_probs=48.8
Q ss_pred CcEEEEEcCCChhHHHHHHHHHhcccCCCCCCeEEEEEecccchhhhhhhHhhhhhhccCCccceEEeCCHHHHhCCCcE
Q 019990 5 PLRVLVTGAAGQIGYALVPMIARGIMLGPDQPVILHMLDIEPAAEALNGVKMELIDAAFPLLKGVVATTDVVEACKDVNI 84 (332)
Q Consensus 5 ~~kI~VtGaaG~IGs~l~~~L~~~~~~~~~~~~~i~l~D~~~~~~~~~~~~~dl~~~~~~~~~~v~~~~~~~~a~~~aDi 84 (332)
++||+|+| +|.+|+.++..|.+.++.. ..+|.++|++. +++.. +... ..+....+..++++++|+
T Consensus 2 ~~~i~iIG-~G~mG~~~a~~l~~~g~~~---~~~V~~~~r~~--~~~~~----~~~~-----~g~~~~~~~~e~~~~aDv 66 (247)
T 3gt0_A 2 DKQIGFIG-CGNMGMAMIGGMINKNIVS---SNQIICSDLNT--ANLKN----ASEK-----YGLTTTTDNNEVAKNADI 66 (247)
T ss_dssp CCCEEEEC-CSHHHHHHHHHHHHTTSSC---GGGEEEECSCH--HHHHH----HHHH-----HCCEECSCHHHHHHHCSE
T ss_pred CCeEEEEC-ccHHHHHHHHHHHhCCCCC---CCeEEEEeCCH--HHHHH----HHHH-----hCCEEeCChHHHHHhCCE
Confidence 36899999 7999999999999877532 13789999863 22322 2110 023345677788899999
Q ss_pred EEEec
Q 019990 85 AVMVG 89 (332)
Q Consensus 85 Vi~~a 89 (332)
||++.
T Consensus 67 Vilav 71 (247)
T 3gt0_A 67 LILSI 71 (247)
T ss_dssp EEECS
T ss_pred EEEEe
Confidence 99875
|
| >2iz1_A 6-phosphogluconate dehydrogenase, decarboxylating; pentose shunt, oxidoreductase, gluconate utilization; HET: ATR RES P33; 2.30A {Lactococcus lactis} PDB: 2iz0_A* 2iyp_A* 2iyo_A* | Back alignment and structure |
|---|
Probab=97.00 E-value=0.0079 Score=57.58 Aligned_cols=69 Identities=14% Similarity=0.050 Sum_probs=47.6
Q ss_pred CcEEEEEcCCChhHHHHHHHHHhcccCCCCCCeEEEEEecccchhhhhhhHhhhhhhccCCccceEEeCCHHHHhCC---
Q 019990 5 PLRVLVTGAAGQIGYALVPMIARGIMLGPDQPVILHMLDIEPAAEALNGVKMELIDAAFPLLKGVVATTDVVEACKD--- 81 (332)
Q Consensus 5 ~~kI~VtGaaG~IGs~l~~~L~~~~~~~~~~~~~i~l~D~~~~~~~~~~~~~dl~~~~~~~~~~v~~~~~~~~a~~~--- 81 (332)
++||+|+| +|.+|++++..|...|+ +|.++|++. +++........ ...+....++.+++++
T Consensus 5 ~~~IgvIG-~G~mG~~lA~~L~~~G~-------~V~v~dr~~--~~~~~l~~~~~------~~gi~~~~s~~e~v~~l~~ 68 (474)
T 2iz1_A 5 QANFGVVG-MAVMGKNLALNVESRGY-------TVAIYNRTT--SKTEEVFKEHQ------DKNLVFTKTLEEFVGSLEK 68 (474)
T ss_dssp TBSEEEEC-CSHHHHHHHHHHHHTTC-------CEEEECSSH--HHHHHHHHHTT------TSCEEECSSHHHHHHTBCS
T ss_pred CCcEEEEe-eHHHHHHHHHHHHhCCC-------EEEEEcCCH--HHHHHHHHhCc------CCCeEEeCCHHHHHhhccC
Confidence 47899999 79999999999998875 799999853 22222111110 0135555677776665
Q ss_pred CcEEEEec
Q 019990 82 VNIAVMVG 89 (332)
Q Consensus 82 aDiVi~~a 89 (332)
+|+||++.
T Consensus 69 aDvVilav 76 (474)
T 2iz1_A 69 PRRIMLMV 76 (474)
T ss_dssp SCEEEECC
T ss_pred CCEEEEEc
Confidence 99999874
|
| >1yb4_A Tartronic semialdehyde reductase; structural genomics, oxidoreductase, salmonella typhimurium LT2, PSI, protein ST initiative; 2.40A {Salmonella typhimurium} | Back alignment and structure |
|---|
Probab=96.99 E-value=0.00078 Score=60.09 Aligned_cols=65 Identities=18% Similarity=0.257 Sum_probs=45.1
Q ss_pred CCcEEEEEcCCChhHHHHHHHHHhcccCCCCCCeEEEEEecccchhhhhhhHhhhhhhccCCccceEEeCCHHHHhCCCc
Q 019990 4 NPLRVLVTGAAGQIGYALVPMIARGIMLGPDQPVILHMLDIEPAAEALNGVKMELIDAAFPLLKGVVATTDVVEACKDVN 83 (332)
Q Consensus 4 ~~~kI~VtGaaG~IGs~l~~~L~~~~~~~~~~~~~i~l~D~~~~~~~~~~~~~dl~~~~~~~~~~v~~~~~~~~a~~~aD 83 (332)
+||||+|+| +|.+|+.++..|...++ +|.++| +.. .... +... .+....+..++++++|
T Consensus 2 ~~m~i~iiG-~G~~G~~~a~~l~~~g~-------~V~~~~-~~~--~~~~----~~~~------g~~~~~~~~~~~~~~D 60 (295)
T 1yb4_A 2 NAMKLGFIG-LGIMGSPMAINLARAGH-------QLHVTT-IGP--VADE----LLSL------GAVNVETARQVTEFAD 60 (295)
T ss_dssp --CEEEECC-CSTTHHHHHHHHHHTTC-------EEEECC-SSC--CCHH----HHTT------TCBCCSSHHHHHHTCS
T ss_pred CCCEEEEEc-cCHHHHHHHHHHHhCCC-------EEEEEc-CHH--HHHH----HHHc------CCcccCCHHHHHhcCC
Confidence 567999999 79999999999988775 888998 542 2221 1111 1222356677788999
Q ss_pred EEEEec
Q 019990 84 IAVMVG 89 (332)
Q Consensus 84 iVi~~a 89 (332)
+||++.
T Consensus 61 ~vi~~v 66 (295)
T 1yb4_A 61 IIFIMV 66 (295)
T ss_dssp EEEECC
T ss_pred EEEEEC
Confidence 999875
|
| >1ks9_A KPA reductase;, 2-dehydropantoate 2-reductase; PANE, APBA, ketopantoate reductase, rossman fold, monomer, APO, oxidoreductase; 1.70A {Escherichia coli} SCOP: a.100.1.7 c.2.1.6 PDB: 1yon_A* 1yjq_A* 2ofp_A* | Back alignment and structure |
|---|
Probab=96.98 E-value=0.0017 Score=57.52 Aligned_cols=98 Identities=9% Similarity=0.097 Sum_probs=58.9
Q ss_pred cEEEEEcCCChhHHHHHHHHHhcccCCCCCCeEEEEEecccchhhhhhhHhhhhhhccC---CccceEEeCCHHHHhCCC
Q 019990 6 LRVLVTGAAGQIGYALVPMIARGIMLGPDQPVILHMLDIEPAAEALNGVKMELIDAAFP---LLKGVVATTDVVEACKDV 82 (332)
Q Consensus 6 ~kI~VtGaaG~IGs~l~~~L~~~~~~~~~~~~~i~l~D~~~~~~~~~~~~~dl~~~~~~---~~~~v~~~~~~~~a~~~a 82 (332)
|||+|+| +|.+|+.++..|.+.++ +|.++|++.. .+.. +...... ....+. ..+ .++++++
T Consensus 1 m~i~iiG-~G~~G~~~a~~l~~~g~-------~V~~~~r~~~--~~~~----l~~~~~~~~~~~~~~~-~~~-~~~~~~~ 64 (291)
T 1ks9_A 1 MKITVLG-CGALGQLWLTALCKQGH-------EVQGWLRVPQ--PYCS----VNLVETDGSIFNESLT-AND-PDFLATS 64 (291)
T ss_dssp CEEEEEC-CSHHHHHHHHHHHHTTC-------EEEEECSSCC--SEEE----EEEECTTSCEEEEEEE-ESC-HHHHHTC
T ss_pred CeEEEEC-cCHHHHHHHHHHHhCCC-------CEEEEEcCcc--ceee----EEEEcCCCceeeeeee-ecC-ccccCCC
Confidence 4899999 69999999999998875 8999998642 2211 1110000 001112 233 4667899
Q ss_pred cEEEEecCCCCCCCCChhHHHhhhHHHHHHHHHHHHhhcCCCcEEEEEeCChh
Q 019990 83 NIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEKHAAPNCKVLVVANPAN 135 (332)
Q Consensus 83 DiVi~~ag~~~~~~~~~~~~~~~N~~~~~~i~~~i~~~~~~~~~viv~snp~~ 135 (332)
|+||++.... + +.++++.+..+..++..++..+|..+
T Consensus 65 d~vi~~v~~~--------~--------~~~v~~~l~~~l~~~~~vv~~~~g~~ 101 (291)
T 1ks9_A 65 DLLLVTLKAW--------Q--------VSDAVKSLASTLPVTTPILLIHNGMG 101 (291)
T ss_dssp SEEEECSCGG--------G--------HHHHHHHHHTTSCTTSCEEEECSSSC
T ss_pred CEEEEEecHH--------h--------HHHHHHHHHhhCCCCCEEEEecCCCC
Confidence 9999974211 1 23444555555435556666788654
|
| >2nqt_A N-acetyl-gamma-glutamyl-phosphate reductase; apoprotein, dimer, rossmann fold, structural genomics, PSI, protein structure initiative; 1.58A {Mycobacterium tuberculosis} PDB: 2i3a_A* 2i3g_A | Back alignment and structure |
|---|
Probab=96.97 E-value=0.00098 Score=61.32 Aligned_cols=25 Identities=24% Similarity=0.372 Sum_probs=22.7
Q ss_pred CcEEEEEcCCChhHHHHHHHHHhcc
Q 019990 5 PLRVLVTGAAGQIGYALVPMIARGI 29 (332)
Q Consensus 5 ~~kI~VtGaaG~IGs~l~~~L~~~~ 29 (332)
|+||+|+||+|.+|+.++..|.+.+
T Consensus 9 m~kVaIvGATG~vG~~llr~L~~~~ 33 (352)
T 2nqt_A 9 ATKVAVAGASGYAGGEILRLLLGHP 33 (352)
T ss_dssp CEEEEEETTTSHHHHHHHHHHHTCH
T ss_pred CCEEEEECCCCHHHHHHHHHHHcCC
Confidence 5799999999999999999998765
|
| >2uv8_A Fatty acid synthase subunit alpha (FAS2); fatty acid biosynthesis, malonyl/palmitoyl transferase, phosphopantetheine, transferase; HET: GVL FMN; 3.10A {Saccharomyces cerevisiae} PDB: 2vkz_A* 3hmj_A* | Back alignment and structure |
|---|
Probab=96.95 E-value=0.0021 Score=70.19 Aligned_cols=123 Identities=13% Similarity=0.145 Sum_probs=69.8
Q ss_pred CCCcEEEEEcCCCh-hHHHHHHHHHhcccCCCCCCeEEEEEecccchhhhhhhHhhhhhh------cc-CCccceEEeCC
Q 019990 3 KNPLRVLVTGAAGQ-IGYALVPMIARGIMLGPDQPVILHMLDIEPAAEALNGVKMELIDA------AF-PLLKGVVATTD 74 (332)
Q Consensus 3 ~~~~kI~VtGaaG~-IGs~l~~~L~~~~~~~~~~~~~i~l~D~~~~~~~~~~~~~dl~~~------~~-~~~~~v~~~~~ 74 (332)
...+.++||||+|. ||.+++..|++.|. +|++.+.+.. +.+.....++... .. .+..|+....+
T Consensus 673 l~gKvaLVTGASsGgIG~aIA~~La~~GA-------~Vvl~~~R~~-~~l~~~~~eL~~~~~~~g~~v~~v~~DVsd~~s 744 (1887)
T 2uv8_A 673 FKDKYVLITGAGKGSIGAEVLQGLLQGGA-------KVVVTTSRFS-KQVTDYYQSIYAKYGAKGSTLIVVPFNQGSKQD 744 (1887)
T ss_dssp CTTCEEEEESCCSSSHHHHHHHHHHHTTC-------EEEEEESSCC-HHHHHHHHHHHHHHCCTTCEEEEEECCTTCHHH
T ss_pred CCCCEEEEECCCCcHHHHHHHHHHHHCCC-------EEEEEecCCH-HHHHHHHHHHHHHhhcCCCeEEEEEecCCCHHH
Confidence 34567999999998 99999999999885 7888853321 2232222233110 00 11234433333
Q ss_pred HHHHh----C---------CCcEEEEecCCCCCC----CCC--h---hHHHhhhHHHHHHHHHHHHhhc----CCCcEEE
Q 019990 75 VVEAC----K---------DVNIAVMVGGFPRKE----GME--R---KDVMSKNVSIYKAQASALEKHA----APNCKVL 128 (332)
Q Consensus 75 ~~~a~----~---------~aDiVi~~ag~~~~~----~~~--~---~~~~~~N~~~~~~i~~~i~~~~----~~~~~vi 128 (332)
+.+.+ + ..|++|+.||+.... ..+ . ...+..|+.....+.+.++... .+.++||
T Consensus 745 V~alv~~i~~~~~~~G~G~~LDiLVNNAGi~~~~~~l~d~t~~~e~~~~v~~vNv~g~~~l~~a~~~lp~m~~~~~G~IV 824 (1887)
T 2uv8_A 745 VEALIEFIYDTEKNGGLGWDLDAIIPFAAIPEQGIELEHIDSKSEFAHRIMLTNILRMMGCVKKQKSARGIETRPAQVIL 824 (1887)
T ss_dssp HHHHHHHHHSCTTTTSCCCCCSEEEECCCCCCCSBCGGGCCHHHHHHHHHHTHHHHHHHHHHHHHHHTTTCCSCCEEEEE
T ss_pred HHHHHHHHHHhccccccCCCCeEEEECCCcCCCCCChhhCCcchHHHHHHHHHHHHHHHHHHHHHHhhhhhhhCCCCEEE
Confidence 33222 1 479999999975322 122 1 2356778887777777663221 0124667
Q ss_pred EEeCC
Q 019990 129 VVANP 133 (332)
Q Consensus 129 v~snp 133 (332)
++|+.
T Consensus 825 nISS~ 829 (1887)
T 2uv8_A 825 PMSPN 829 (1887)
T ss_dssp EECSC
T ss_pred EEcCh
Confidence 77653
|
| >3dr3_A N-acetyl-gamma-glutamyl-phosphate reductase; csgid target, ARGC, essential gene, amino-acid biosynthesis, arginine biosynthesis, cytoplasm; HET: MLT; 2.00A {Shigella flexneri} PDB: 2g17_A | Back alignment and structure |
|---|
Probab=96.95 E-value=0.0045 Score=56.47 Aligned_cols=36 Identities=28% Similarity=0.420 Sum_probs=28.2
Q ss_pred CCCcEEEEEcCCChhHHHHHHHHHhcccCCCCCCeEEEEEec
Q 019990 3 KNPLRVLVTGAAGQIGYALVPMIARGIMLGPDQPVILHMLDI 44 (332)
Q Consensus 3 ~~~~kI~VtGaaG~IGs~l~~~L~~~~~~~~~~~~~i~l~D~ 44 (332)
+.|+||+|+||+|.+|..++..|..... .++..+..
T Consensus 2 ~~M~kv~IvGatG~vG~~l~~~L~~~p~------~el~~l~s 37 (337)
T 3dr3_A 2 NAMLNTLIVGASGYAGAELVTYVNRHPH------MNITALTV 37 (337)
T ss_dssp -CCEEEEEETTTSHHHHHHHHHHHHCTT------EEEEEEEE
T ss_pred CCceEEEEECCCChHHHHHHHHHHhCCC------CcEEEEEe
Confidence 4678999999999999999998887432 26766654
|
| >2pff_A Fatty acid synthase subunit alpha, 3-oxoacyl-[acyl-carrier-PR; fatty acid synthase, acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl synthase, dehydratase; 4.00A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=96.91 E-value=0.00066 Score=72.27 Aligned_cols=120 Identities=13% Similarity=0.154 Sum_probs=68.3
Q ss_pred CCcEEEEEcCCCh-hHHHHHHHHHhcccCCCCCCeEEEEEe-cccchhhhhhhHhhhhhh------c-cCCccceEEeCC
Q 019990 4 NPLRVLVTGAAGQ-IGYALVPMIARGIMLGPDQPVILHMLD-IEPAAEALNGVKMELIDA------A-FPLLKGVVATTD 74 (332)
Q Consensus 4 ~~~kI~VtGaaG~-IGs~l~~~L~~~~~~~~~~~~~i~l~D-~~~~~~~~~~~~~dl~~~------~-~~~~~~v~~~~~ 74 (332)
+.+.++||||+|. ||.+++..|++.|. +|++.+ ++. +.+.....++... . .....|++...+
T Consensus 475 ~GKvALVTGASgGGIGrAIAr~LA~~GA-------~VVL~~~R~~--e~lee~a~eL~ael~a~Ga~V~vV~~DVTD~es 545 (1688)
T 2pff_A 475 KDKYVLITGAGKGSIGAEVLQGLLQGGA-------KVVVTTSRFS--KQVTDYYQSIYAKYGAKGSTLIVVPFNQGSKQD 545 (1688)
T ss_dssp CSCCEEECSCSSSSTHHHHHHHHHHHTC-------EEEEEESSCS--TTTTTHHHHTTTTTCCTTCEEEEEECCSSSTTH
T ss_pred CCCEEEEECCChHHHHHHHHHHHHHCcC-------EEEEEeCCCH--HHHHHHHHHHHHHhhcCCCeEEEEEeCCCCHHH
Confidence 4567999999998 99999999999885 788874 432 2232222233110 0 011234444444
Q ss_pred HHHHhC-------------CCcEEEEecCCCCCC----CCC--h---hHHHhhhHHHHHHHHHHHHhhc----CCCcEEE
Q 019990 75 VVEACK-------------DVNIAVMVGGFPRKE----GME--R---KDVMSKNVSIYKAQASALEKHA----APNCKVL 128 (332)
Q Consensus 75 ~~~a~~-------------~aDiVi~~ag~~~~~----~~~--~---~~~~~~N~~~~~~i~~~i~~~~----~~~~~vi 128 (332)
+.+.++ ..|++|+.||..... ..+ . ...+..|+.....+.+.++... .+...||
T Consensus 546 VeaLVe~I~e~~~~~GfG~~IDILVNNAGI~~~g~~l~dlt~s~Ed~~rv~~VNL~G~~~Ltqaa~~lp~M~krggGrIV 625 (1688)
T 2pff_A 546 VEALIEFIYDTEKNGGLGWDLDAIIPFAAIPEQGIELEHIDSKSEFAHRIMLTNILRMMGCVKKQKSARGIETRPAQVIL 625 (1688)
T ss_dssp HHHHHHHHHSCTTSSSCCCCCCEEECCCCCCCCSBCSSSCTTHHHHHHHHTTHHHHHHHHHHHHHHHHHTCTTSCEEECC
T ss_pred HHHHHHHHHHhccccccCCCCeEEEECCCcCCCCCChhhCCCCHHHHHHHHHHHHHHHHHHHHHHHhChHHHhCCCCEEE
Confidence 433321 479999999975321 122 2 2356778877766666663211 1124566
Q ss_pred EEeC
Q 019990 129 VVAN 132 (332)
Q Consensus 129 v~sn 132 (332)
++|+
T Consensus 626 nISS 629 (1688)
T 2pff_A 626 PMSP 629 (1688)
T ss_dssp CCCS
T ss_pred EEEC
Confidence 6664
|
| >3fwz_A Inner membrane protein YBAL; TRKA-N domain, E.coli, structural genomics, PSI-2, Pro structure initiative; HET: MSE AMP; 1.79A {Escherichia coli k-12} | Back alignment and structure |
|---|
Probab=96.87 E-value=0.004 Score=49.05 Aligned_cols=98 Identities=12% Similarity=0.129 Sum_probs=56.3
Q ss_pred CcEEEEEcCCChhHHHHHHHHHhcccCCCCCCeEEEEEecccchhhhhhhHhhhhhhccC-CccceEEeCCHHHH-hCCC
Q 019990 5 PLRVLVTGAAGQIGYALVPMIARGIMLGPDQPVILHMLDIEPAAEALNGVKMELIDAAFP-LLKGVVATTDVVEA-CKDV 82 (332)
Q Consensus 5 ~~kI~VtGaaG~IGs~l~~~L~~~~~~~~~~~~~i~l~D~~~~~~~~~~~~~dl~~~~~~-~~~~v~~~~~~~~a-~~~a 82 (332)
..+|+|+| .|.+|+.++..|.+.++ +++++|.+. +... .+...... ..++.+....+.++ +.++
T Consensus 7 ~~~viIiG-~G~~G~~la~~L~~~g~-------~v~vid~~~--~~~~----~~~~~g~~~i~gd~~~~~~l~~a~i~~a 72 (140)
T 3fwz_A 7 CNHALLVG-YGRVGSLLGEKLLASDI-------PLVVIETSR--TRVD----ELRERGVRAVLGNAANEEIMQLAHLECA 72 (140)
T ss_dssp CSCEEEEC-CSHHHHHHHHHHHHTTC-------CEEEEESCH--HHHH----HHHHTTCEEEESCTTSHHHHHHTTGGGC
T ss_pred CCCEEEEC-cCHHHHHHHHHHHHCCC-------CEEEEECCH--HHHH----HHHHcCCCEEECCCCCHHHHHhcCcccC
Confidence 35899999 69999999999998876 899999864 2222 12221111 11222211122222 5689
Q ss_pred cEEEEecCCCCCCCCChhHHHhhhHHHHHHHHHHHHhhcCCCcEEEEEeC
Q 019990 83 NIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEKHAAPNCKVLVVAN 132 (332)
Q Consensus 83 DiVi~~ag~~~~~~~~~~~~~~~N~~~~~~i~~~i~~~~~~~~~viv~sn 132 (332)
|+||.+.+. . ..|. .++..+++.. |+.+++.-.+
T Consensus 73 d~vi~~~~~--------~---~~n~----~~~~~a~~~~-~~~~iiar~~ 106 (140)
T 3fwz_A 73 KWLILTIPN--------G---YEAG----EIVASARAKN-PDIEIIARAH 106 (140)
T ss_dssp SEEEECCSC--------H---HHHH----HHHHHHHHHC-SSSEEEEEES
T ss_pred CEEEEECCC--------h---HHHH----HHHHHHHHHC-CCCeEEEEEC
Confidence 999887421 1 1232 2334555654 6667665554
|
| >2uv9_A Fatty acid synthase alpha subunits; fungal, dehydratase, enoyl reductase, ketoacyl synthase, ketoacyl reductase; 3.1A {Thermomyces lanuginosus} PDB: 2uvb_A* | Back alignment and structure |
|---|
Probab=96.86 E-value=0.0018 Score=70.65 Aligned_cols=122 Identities=14% Similarity=0.157 Sum_probs=68.0
Q ss_pred CCCcEEEEEcCCCh-hHHHHHHHHHhcccCCCCCCeEEEEEecccchhhhhhhHhhhhh-h---c--c-CCccceEEeCC
Q 019990 3 KNPLRVLVTGAAGQ-IGYALVPMIARGIMLGPDQPVILHMLDIEPAAEALNGVKMELID-A---A--F-PLLKGVVATTD 74 (332)
Q Consensus 3 ~~~~kI~VtGaaG~-IGs~l~~~L~~~~~~~~~~~~~i~l~D~~~~~~~~~~~~~dl~~-~---~--~-~~~~~v~~~~~ 74 (332)
.+.+.++||||+|. ||.+++..|++.|. +|++.+.+.. +.+.....++.. . . . ....|+....+
T Consensus 650 L~gKvaLVTGASgGgIG~aIAr~LA~~GA-------~VVl~~~R~~-~~l~~~a~eL~~el~~~G~~v~~v~~DVsd~es 721 (1878)
T 2uv9_A 650 FQGKHALMTGAGAGSIGAEVLQGLLSGGA-------KVIVTTSRFS-RQVTEYYQGIYARCGARGSQLVVVPFNQGSKQD 721 (1878)
T ss_dssp CTTCEEEEESCCTTSHHHHHHHHHHHTTC-------EEEEEESSCC-HHHHHHHHHHHHHHCCTTCEEEEEECCTTCHHH
T ss_pred CCCCEEEEECCCCcHHHHHHHHHHHHCCC-------EEEEEecCCh-HHHHHHHHHHHHHhhccCCeEEEEEcCCCCHHH
Confidence 34578999999998 99999999999885 7888864322 222222222211 1 0 0 11234433333
Q ss_pred HHHHh-----C------CCcEEEEecCCCCCC----CCC--h---hHHHhhhHHHHHHHHHHHHhh---c-CCCcEEEEE
Q 019990 75 VVEAC-----K------DVNIAVMVGGFPRKE----GME--R---KDVMSKNVSIYKAQASALEKH---A-APNCKVLVV 130 (332)
Q Consensus 75 ~~~a~-----~------~aDiVi~~ag~~~~~----~~~--~---~~~~~~N~~~~~~i~~~i~~~---~-~~~~~viv~ 130 (332)
+.+.+ + ..|++|+.||+.... ..+ . ...+..|+.....+...++.. . .+...||++
T Consensus 722 V~alv~~i~~~~~~~G~~IDiLVnNAGi~~~~~~l~d~t~~~e~~~~vl~vNv~g~~~l~~a~~~lp~M~~~~~G~IVnI 801 (1878)
T 2uv9_A 722 VEALVNYIYDTKNGLGWDLDYVVPFAAIPENGREIDSIDSKSELAHRIMLTNLLRLLGAIKTQKKERGYETRPAQVILPL 801 (1878)
T ss_dssp HHHHHHHHHCSSSSCCCCCSEEEECCCCCCTTCCTTCCCHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCCSCCEEECCEE
T ss_pred HHHHHHHHHHhhcccCCCCcEEEeCcccccCCCChhhcCcCHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhCCCCEEEEE
Confidence 33322 1 479999999975321 222 1 235677887666655543221 1 112466666
Q ss_pred eC
Q 019990 131 AN 132 (332)
Q Consensus 131 sn 132 (332)
|+
T Consensus 802 SS 803 (1878)
T 2uv9_A 802 SP 803 (1878)
T ss_dssp CS
T ss_pred cc
Confidence 65
|
| >4gwg_A 6-phosphogluconate dehydrogenase, decarboxylating; 6-phosphoglyconate dehydrogenase, NADP, oxido; HET: MES; 1.39A {Homo sapiens} PDB: 4gwk_A* 2jkv_A* 2pgd_A 1pgo_A* 1pgp_A* 1pgq_A* 1pgn_A | Back alignment and structure |
|---|
Probab=96.85 E-value=0.0091 Score=57.19 Aligned_cols=72 Identities=8% Similarity=0.136 Sum_probs=48.0
Q ss_pred CCCcEEEEEcCCChhHHHHHHHHHhcccCCCCCCeEEEEEecccchhhhhhhHhhhhhhccCCccceEEeCCHHHHhC--
Q 019990 3 KNPLRVLVTGAAGQIGYALVPMIARGIMLGPDQPVILHMLDIEPAAEALNGVKMELIDAAFPLLKGVVATTDVVEACK-- 80 (332)
Q Consensus 3 ~~~~kI~VtGaaG~IGs~l~~~L~~~~~~~~~~~~~i~l~D~~~~~~~~~~~~~dl~~~~~~~~~~v~~~~~~~~a~~-- 80 (332)
+.++||+|+| .|.+|++++..|...|+ +|.++|++. +++. .+..... ....+....++.++++
T Consensus 2 ~~~~kIgiIG-lG~MG~~lA~~L~~~G~-------~V~v~dr~~--~~~~----~l~~~g~-~g~~i~~~~s~~e~v~~l 66 (484)
T 4gwg_A 2 NAQADIALIG-LAVMGQNLILNMNDHGF-------VVCAFNRTV--SKVD----DFLANEA-KGTKVVGAQSLKEMVSKL 66 (484)
T ss_dssp -CCBSEEEEC-CSHHHHHHHHHHHHTTC-------CEEEECSST--HHHH----HHHHTTT-TTSSCEECSSHHHHHHTB
T ss_pred CCCCEEEEEC-hhHHHHHHHHHHHHCCC-------EEEEEeCCH--HHHH----HHHhccc-CCCceeccCCHHHHHhhc
Confidence 3567999999 79999999999999886 799999864 2222 2211100 0113444456666554
Q ss_pred -CCcEEEEec
Q 019990 81 -DVNIAVMVG 89 (332)
Q Consensus 81 -~aDiVi~~a 89 (332)
++|+||++.
T Consensus 67 ~~aDvVil~V 76 (484)
T 4gwg_A 67 KKPRRIILLV 76 (484)
T ss_dssp CSSCEEEECS
T ss_pred cCCCEEEEec
Confidence 699999874
|
| >2axq_A Saccharopine dehydrogenase; rossmann fold variant, saccharopine reductase fold (domain II), alpha/beta protein; 1.70A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=96.85 E-value=0.00083 Score=64.25 Aligned_cols=76 Identities=9% Similarity=0.111 Sum_probs=47.5
Q ss_pred CCcEEEEEcCCChhHHHHHHHHHhc-ccCCCCCCeEEEEEecccchhhhhhhHhhhhhhccCCccceEEeCCHHHHhCCC
Q 019990 4 NPLRVLVTGAAGQIGYALVPMIARG-IMLGPDQPVILHMLDIEPAAEALNGVKMELIDAAFPLLKGVVATTDVVEACKDV 82 (332)
Q Consensus 4 ~~~kI~VtGaaG~IGs~l~~~L~~~-~~~~~~~~~~i~l~D~~~~~~~~~~~~~dl~~~~~~~~~~v~~~~~~~~a~~~a 82 (332)
++++|+|+|| |++|++++..|++. +. +|.++|++. +++...... .... ....++....++.++++++
T Consensus 22 ~~k~VlIiGA-GgiG~aia~~L~~~~g~-------~V~v~~R~~--~ka~~la~~-~~~~-~~~~D~~d~~~l~~~l~~~ 89 (467)
T 2axq_A 22 MGKNVLLLGS-GFVAQPVIDTLAANDDI-------NVTVACRTL--ANAQALAKP-SGSK-AISLDVTDDSALDKVLADN 89 (467)
T ss_dssp -CEEEEEECC-STTHHHHHHHHHTSTTE-------EEEEEESSH--HHHHHHHGG-GTCE-EEECCTTCHHHHHHHHHTS
T ss_pred CCCEEEEECC-hHHHHHHHHHHHhCCCC-------eEEEEECCH--HHHHHHHHh-cCCc-EEEEecCCHHHHHHHHcCC
Confidence 4678999995 99999999999876 43 899999853 223222111 1100 0011222222455677899
Q ss_pred cEEEEecCC
Q 019990 83 NIAVMVGGF 91 (332)
Q Consensus 83 DiVi~~ag~ 91 (332)
|+||++++.
T Consensus 90 DvVIn~tp~ 98 (467)
T 2axq_A 90 DVVISLIPY 98 (467)
T ss_dssp SEEEECSCG
T ss_pred CEEEECCch
Confidence 999999865
|
| >1pgj_A 6PGDH, 6-PGDH, 6-phosphogluconate dehydrogenase; oxidoreductase, CHOH(D)-NADP+(B); 2.82A {Trypanosoma brucei} SCOP: a.100.1.1 c.2.1.6 | Back alignment and structure |
|---|
Probab=96.84 E-value=0.0097 Score=57.01 Aligned_cols=72 Identities=17% Similarity=0.115 Sum_probs=47.0
Q ss_pred cEEEEEcCCChhHHHHHHHHHhcccCCCCCCeEEEEEecccchhhhhhhHhhhhhhccCCccceEEeCCHHHHhC---CC
Q 019990 6 LRVLVTGAAGQIGYALVPMIARGIMLGPDQPVILHMLDIEPAAEALNGVKMELIDAAFPLLKGVVATTDVVEACK---DV 82 (332)
Q Consensus 6 ~kI~VtGaaG~IGs~l~~~L~~~~~~~~~~~~~i~l~D~~~~~~~~~~~~~dl~~~~~~~~~~v~~~~~~~~a~~---~a 82 (332)
|||+|+| +|.+|++++..|...|+ +|.++|++. +++.....+. ...+...++....++.++++ ++
T Consensus 2 MkIgVIG-~G~mG~~lA~~La~~G~-------~V~v~dr~~--~~~~~l~~~~--g~~~~~~~i~~~~~~~e~v~~l~~a 69 (478)
T 1pgj_A 2 MDVGVVG-LGVMGANLALNIAEKGF-------KVAVFNRTY--SKSEEFMKAN--ASAPFAGNLKAFETMEAFAASLKKP 69 (478)
T ss_dssp BSEEEEC-CSHHHHHHHHHHHHTTC-------CEEEECSSH--HHHHHHHHHT--TTSTTGGGEEECSCHHHHHHHBCSS
T ss_pred CEEEEEC-hHHHHHHHHHHHHHCCC-------EEEEEeCCH--HHHHHHHHhc--CCCCCCCCeEEECCHHHHHhcccCC
Confidence 5899999 79999999999998876 799999853 2232211110 00011123555566666655 59
Q ss_pred cEEEEec
Q 019990 83 NIAVMVG 89 (332)
Q Consensus 83 DiVi~~a 89 (332)
|+||++.
T Consensus 70 DvVilaV 76 (478)
T 1pgj_A 70 RKALILV 76 (478)
T ss_dssp CEEEECC
T ss_pred CEEEEec
Confidence 9999874
|
| >3ego_A Probable 2-dehydropantoate 2-reductase; structural genomics, PANE, unknown function, cytoplasm, NADP, oxidoreductase; 1.90A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=96.71 E-value=0.0049 Score=55.47 Aligned_cols=117 Identities=15% Similarity=0.153 Sum_probs=65.1
Q ss_pred CcEEEEEcCCChhHHHHHHHHHhcccCCCCCCeEEEEEecccchhhhhhhHhhhhhhcc--CC---ccceEEeCCHHHHh
Q 019990 5 PLRVLVTGAAGQIGYALVPMIARGIMLGPDQPVILHMLDIEPAAEALNGVKMELIDAAF--PL---LKGVVATTDVVEAC 79 (332)
Q Consensus 5 ~~kI~VtGaaG~IGs~l~~~L~~~~~~~~~~~~~i~l~D~~~~~~~~~~~~~dl~~~~~--~~---~~~v~~~~~~~~a~ 79 (332)
+|||+|+| +|.+|+.++..|. .+. +|.+++++. +.++.... ..... +. ...+... .++.
T Consensus 2 ~mkI~IiG-aGa~G~~~a~~L~-~g~-------~V~~~~r~~--~~~~~l~~--~G~~~~~~~~~~~~~~~~~---~~~~ 65 (307)
T 3ego_A 2 SLKIGIIG-GGSVGLLCAYYLS-LYH-------DVTVVTRRQ--EQAAAIQS--EGIRLYKGGEEFRADCSAD---TSIN 65 (307)
T ss_dssp CCEEEEEC-CSHHHHHHHHHHH-TTS-------EEEEECSCH--HHHHHHHH--HCEEEEETTEEEEECCEEE---SSCC
T ss_pred CCEEEEEC-CCHHHHHHHHHHh-cCC-------ceEEEECCH--HHHHHHHh--CCceEecCCCeeccccccc---cccc
Confidence 37899999 6999999999998 764 899999853 12211110 00000 00 0011111 2346
Q ss_pred CCCcEEEEecCCCCCCCCChhHHHhhhHHHHHHHHHHHHhhcCCCcEEEEEeCChhhHHHHHHHHCCCCCCCcE-EEeec
Q 019990 80 KDVNIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEKHAAPNCKVLVVANPANTNALILKEFAPSIPAKNI-TCLTR 158 (332)
Q Consensus 80 ~~aDiVi~~ag~~~~~~~~~~~~~~~N~~~~~~i~~~i~~~~~~~~~viv~snp~~~~~~~~~~~~~~~~~~~i-~~~t~ 158 (332)
.++|+||++. ++ .+ +.++++.++... ++. ++.+.|-++... .+.+ -+|..++ +|.+.
T Consensus 66 ~~~D~vilav----K~----~~--------~~~~l~~l~~~~-~~~-ivs~~nGi~~~e-~l~~---~~~~~~vl~g~~~ 123 (307)
T 3ego_A 66 SDFDLLVVTV----KQ----HQ--------LQSVFSSLERIG-KTN-ILFLQNGMGHIH-DLKD---WHVGHSIYVGIVE 123 (307)
T ss_dssp SCCSEEEECC----CG----GG--------HHHHHHHTTSSC-CCE-EEECCSSSHHHH-HHHT---CCCSCEEEEEEEC
T ss_pred CCCCEEEEEe----CH----HH--------HHHHHHHhhcCC-CCe-EEEecCCccHHH-HHHH---hCCCCcEEEEEEe
Confidence 7899999874 21 11 234455555553 555 777788776432 2333 2566675 45454
Q ss_pred c
Q 019990 159 L 159 (332)
Q Consensus 159 l 159 (332)
.
T Consensus 124 ~ 124 (307)
T 3ego_A 124 H 124 (307)
T ss_dssp C
T ss_pred e
Confidence 4
|
| >2pgd_A 6-phosphogluconate dehydrogenase; oxidoreductase (CHOH(D)-NADP+(A)); 2.00A {Ovis aries} SCOP: a.100.1.1 c.2.1.6 PDB: 1pgo_A* 1pgp_A* 1pgq_A* 1pgn_A 2jkv_A* | Back alignment and structure |
|---|
Probab=96.70 E-value=0.017 Score=55.29 Aligned_cols=69 Identities=9% Similarity=0.140 Sum_probs=46.7
Q ss_pred cEEEEEcCCChhHHHHHHHHHhcccCCCCCCeEEEEEecccchhhhhhhHhhhhhhccCCccceEEeCCHHHHh---CCC
Q 019990 6 LRVLVTGAAGQIGYALVPMIARGIMLGPDQPVILHMLDIEPAAEALNGVKMELIDAAFPLLKGVVATTDVVEAC---KDV 82 (332)
Q Consensus 6 ~kI~VtGaaG~IGs~l~~~L~~~~~~~~~~~~~i~l~D~~~~~~~~~~~~~dl~~~~~~~~~~v~~~~~~~~a~---~~a 82 (332)
|||+|+| +|.+|++++..|...|+ +|.++|++. +++.. +.....+ ...+....++.+++ +++
T Consensus 3 m~IgvIG-~G~mG~~lA~~La~~G~-------~V~v~dr~~--~~~~~----l~~~~~~-g~gi~~~~~~~e~v~~l~~a 67 (482)
T 2pgd_A 3 ADIALIG-LAVMGQNLILNMNDHGF-------VVCAFNRTV--SKVDD----FLANEAK-GTKVLGAHSLEEMVSKLKKP 67 (482)
T ss_dssp BSEEEEC-CSHHHHHHHHHHHHTTC-------CEEEECSST--HHHHH----HHHTTTT-TSSCEECSSHHHHHHHBCSS
T ss_pred CeEEEEC-hHHHHHHHHHHHHHCCC-------eEEEEeCCH--HHHHH----HHhcccc-CCCeEEeCCHHHHHhhccCC
Confidence 6899999 79999999999998876 799999864 22222 2110000 02344556666665 589
Q ss_pred cEEEEec
Q 019990 83 NIAVMVG 89 (332)
Q Consensus 83 DiVi~~a 89 (332)
|+||++.
T Consensus 68 DvVilaV 74 (482)
T 2pgd_A 68 RRIILLV 74 (482)
T ss_dssp CEEEECS
T ss_pred CEEEEeC
Confidence 9999874
|
| >3l4b_C TRKA K+ channel protien TM1088B; potassium channel, ring-gating complex, structural GEN PSI-2-2, protein structure initiative; HET: AMP; 3.45A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=96.67 E-value=0.0013 Score=56.02 Aligned_cols=72 Identities=13% Similarity=0.186 Sum_probs=44.5
Q ss_pred cEEEEEcCCChhHHHHHHHHHhcccCCCCCCeEEEEEecccchhhhhhhHhhhhhhccCCccceEEeCCHHHH-hCCCcE
Q 019990 6 LRVLVTGAAGQIGYALVPMIARGIMLGPDQPVILHMLDIEPAAEALNGVKMELIDAAFPLLKGVVATTDVVEA-CKDVNI 84 (332)
Q Consensus 6 ~kI~VtGaaG~IGs~l~~~L~~~~~~~~~~~~~i~l~D~~~~~~~~~~~~~dl~~~~~~~~~~v~~~~~~~~a-~~~aDi 84 (332)
|||+|+| +|.+|++++..|...++ +++++|.+. +......... ... ...++.+....+.++ +.++|+
T Consensus 1 M~iiIiG-~G~~G~~la~~L~~~g~-------~v~vid~~~--~~~~~l~~~~-~~~-~i~gd~~~~~~l~~a~i~~ad~ 68 (218)
T 3l4b_C 1 MKVIIIG-GETTAYYLARSMLSRKY-------GVVIINKDR--ELCEEFAKKL-KAT-IIHGDGSHKEILRDAEVSKNDV 68 (218)
T ss_dssp CCEEEEC-CHHHHHHHHHHHHHTTC-------CEEEEESCH--HHHHHHHHHS-SSE-EEESCTTSHHHHHHHTCCTTCE
T ss_pred CEEEEEC-CCHHHHHHHHHHHhCCC-------eEEEEECCH--HHHHHHHHHc-CCe-EEEcCCCCHHHHHhcCcccCCE
Confidence 4799999 59999999999998875 799999853 2222111110 110 011222222234444 689999
Q ss_pred EEEec
Q 019990 85 AVMVG 89 (332)
Q Consensus 85 Vi~~a 89 (332)
||.+.
T Consensus 69 vi~~~ 73 (218)
T 3l4b_C 69 VVILT 73 (218)
T ss_dssp EEECC
T ss_pred EEEec
Confidence 99864
|
| >4gbj_A 6-phosphogluconate dehydrogenase NAD-binding; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; 2.05A {Dyadobacter fermentans} | Back alignment and structure |
|---|
Probab=96.66 E-value=0.0031 Score=56.55 Aligned_cols=64 Identities=14% Similarity=0.211 Sum_probs=44.5
Q ss_pred cEEEEEcCCChhHHHHHHHHHhcccCCCCCCeEEEEEecccchhhhhhhHhhhhhhccCCccceEEeCCHHHHhCCCcEE
Q 019990 6 LRVLVTGAAGQIGYALVPMIARGIMLGPDQPVILHMLDIEPAAEALNGVKMELIDAAFPLLKGVVATTDVVEACKDVNIA 85 (332)
Q Consensus 6 ~kI~VtGaaG~IGs~l~~~L~~~~~~~~~~~~~i~l~D~~~~~~~~~~~~~dl~~~~~~~~~~v~~~~~~~~a~~~aDiV 85 (332)
.||+++| .|.+|+.++..|++.|+ +|+.+|++.. +.+ ++.. .......+..++++++|+|
T Consensus 6 ~kIgfIG-LG~MG~~mA~~L~~~G~-------~V~v~dr~~~--~~~----~l~~------~G~~~~~s~~e~~~~~dvv 65 (297)
T 4gbj_A 6 EKIAFLG-LGNLGTPIAEILLEAGY-------ELVVWNRTAS--KAE----PLTK------LGATVVENAIDAITPGGIV 65 (297)
T ss_dssp CEEEEEC-CSTTHHHHHHHHHHTTC-------EEEEC---------C----TTTT------TTCEECSSGGGGCCTTCEE
T ss_pred CcEEEEe-cHHHHHHHHHHHHHCCC-------eEEEEeCCHH--HHH----HHHH------cCCeEeCCHHHHHhcCCce
Confidence 4899999 89999999999999887 8999998642 222 2221 1234456677888999999
Q ss_pred EEec
Q 019990 86 VMVG 89 (332)
Q Consensus 86 i~~a 89 (332)
|.+-
T Consensus 66 i~~l 69 (297)
T 4gbj_A 66 FSVL 69 (297)
T ss_dssp EECC
T ss_pred eeec
Confidence 9864
|
| >1yqg_A Pyrroline-5-carboxylate reductase; structural genomics, PSI, structure initiative, midwest center for structural genomic oxidoreductase; 1.90A {Neisseria meningitidis} SCOP: a.100.1.10 c.2.1.6 PDB: 2ag8_A* | Back alignment and structure |
|---|
Probab=96.65 E-value=0.003 Score=55.29 Aligned_cols=64 Identities=16% Similarity=0.217 Sum_probs=44.0
Q ss_pred cEEEEEcCCChhHHHHHHHHHhcc-cCCCCCCeEEEEEecccchhhhhhhHhhhhhhccCCccceEEeCCHHHHhCCCcE
Q 019990 6 LRVLVTGAAGQIGYALVPMIARGI-MLGPDQPVILHMLDIEPAAEALNGVKMELIDAAFPLLKGVVATTDVVEACKDVNI 84 (332)
Q Consensus 6 ~kI~VtGaaG~IGs~l~~~L~~~~-~~~~~~~~~i~l~D~~~~~~~~~~~~~dl~~~~~~~~~~v~~~~~~~~a~~~aDi 84 (332)
|||+|+| +|.+|+.++..|...+ . +|.++|++. +++.. +... + .+....+..+++ ++|+
T Consensus 1 m~i~iiG-~G~mG~~~a~~l~~~g~~-------~v~~~~r~~--~~~~~----~~~~---~--g~~~~~~~~~~~-~~D~ 60 (263)
T 1yqg_A 1 MNVYFLG-GGNMAAAVAGGLVKQGGY-------RIYIANRGA--EKRER----LEKE---L--GVETSATLPELH-SDDV 60 (263)
T ss_dssp CEEEEEC-CSHHHHHHHHHHHHHCSC-------EEEEECSSH--HHHHH----HHHH---T--CCEEESSCCCCC-TTSE
T ss_pred CEEEEEC-chHHHHHHHHHHHHCCCC-------eEEEECCCH--HHHHH----HHHh---c--CCEEeCCHHHHh-cCCE
Confidence 4899999 6999999999998877 4 899999853 22221 2111 0 123344555667 9999
Q ss_pred EEEec
Q 019990 85 AVMVG 89 (332)
Q Consensus 85 Vi~~a 89 (332)
||++.
T Consensus 61 vi~~v 65 (263)
T 1yqg_A 61 LILAV 65 (263)
T ss_dssp EEECS
T ss_pred EEEEe
Confidence 99874
|
| >1z82_A Glycerol-3-phosphate dehydrogenase; TM0378, structural genom joint center for structural genomics, JCSG, protein structu initiative, PSI; HET: MSE NDP G3H G3P; 2.00A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=96.62 E-value=0.0062 Score=55.40 Aligned_cols=71 Identities=24% Similarity=0.263 Sum_probs=47.7
Q ss_pred CCcEEEEEcCCChhHHHHHHHHHhcccCCCCCCeEEEEEecccchhhhhhhHhhhhhhcc-CCcc----ceEEeCCHHHH
Q 019990 4 NPLRVLVTGAAGQIGYALVPMIARGIMLGPDQPVILHMLDIEPAAEALNGVKMELIDAAF-PLLK----GVVATTDVVEA 78 (332)
Q Consensus 4 ~~~kI~VtGaaG~IGs~l~~~L~~~~~~~~~~~~~i~l~D~~~~~~~~~~~~~dl~~~~~-~~~~----~v~~~~~~~~a 78 (332)
.++||+|+| +|.+|+.++..|.+.|+ +|.++|++. +++.. +..... .... ++....+..+
T Consensus 13 ~~~kI~iIG-~G~mG~ala~~L~~~G~-------~V~~~~r~~--~~~~~----l~~~g~~~~~~~~~~~~~~~~~~~~- 77 (335)
T 1z82_A 13 MEMRFFVLG-AGSWGTVFAQMLHENGE-------EVILWARRK--EIVDL----INVSHTSPYVEESKITVRATNDLEE- 77 (335)
T ss_dssp -CCEEEEEC-CSHHHHHHHHHHHHTTC-------EEEEECSSH--HHHHH----HHHHSCBTTBTTCCCCSEEESCGGG-
T ss_pred cCCcEEEEC-cCHHHHHHHHHHHhCCC-------eEEEEeCCH--HHHHH----HHHhCCcccCCCCeeeEEEeCCHHH-
Confidence 368999999 79999999999998875 899999853 22222 211100 0000 3455566666
Q ss_pred hCCCcEEEEec
Q 019990 79 CKDVNIAVMVG 89 (332)
Q Consensus 79 ~~~aDiVi~~a 89 (332)
++++|+||++.
T Consensus 78 ~~~aDvVil~v 88 (335)
T 1z82_A 78 IKKEDILVIAI 88 (335)
T ss_dssp CCTTEEEEECS
T ss_pred hcCCCEEEEEC
Confidence 88999999874
|
| >2gf2_A Hibadh, 3-hydroxyisobutyrate dehydrogenase; structural genomics, structural genomics consortium, SGC, oxidoreductase; 2.38A {Homo sapiens} PDB: 2i9p_A* | Back alignment and structure |
|---|
Probab=96.61 E-value=0.0031 Score=56.16 Aligned_cols=64 Identities=19% Similarity=0.292 Sum_probs=45.9
Q ss_pred cEEEEEcCCChhHHHHHHHHHhcccCCCCCCeEEEEEecccchhhhhhhHhhhhhhccCCccceEEeCCHHHHhCCCcEE
Q 019990 6 LRVLVTGAAGQIGYALVPMIARGIMLGPDQPVILHMLDIEPAAEALNGVKMELIDAAFPLLKGVVATTDVVEACKDVNIA 85 (332)
Q Consensus 6 ~kI~VtGaaG~IGs~l~~~L~~~~~~~~~~~~~i~l~D~~~~~~~~~~~~~dl~~~~~~~~~~v~~~~~~~~a~~~aDiV 85 (332)
|||+|+| +|.+|+.++..|...++ +|.++|++. +++. .+... .+....+..++++++|+|
T Consensus 1 m~i~iiG-~G~mG~~~a~~l~~~g~-------~V~~~~~~~--~~~~----~~~~~------g~~~~~~~~~~~~~~Dvv 60 (296)
T 2gf2_A 1 MPVGFIG-LGNMGNPMAKNLMKHGY-------PLIIYDVFP--DACK----EFQDA------GEQVVSSPADVAEKADRI 60 (296)
T ss_dssp CCEEEEC-CSTTHHHHHHHHHHTTC-------CEEEECSST--HHHH----HHHTT------TCEECSSHHHHHHHCSEE
T ss_pred CeEEEEe-ccHHHHHHHHHHHHCCC-------EEEEEeCCH--HHHH----HHHHc------CCeecCCHHHHHhcCCEE
Confidence 4799999 79999999999988775 789999854 2222 12211 233445677778899999
Q ss_pred EEec
Q 019990 86 VMVG 89 (332)
Q Consensus 86 i~~a 89 (332)
|++.
T Consensus 61 i~~v 64 (296)
T 2gf2_A 61 ITML 64 (296)
T ss_dssp EECC
T ss_pred EEeC
Confidence 9874
|
| >1np3_A Ketol-acid reductoisomerase; A DEEP figure-OF-eight knot, C-terminal alpha-helical domain oxidoreductase; 2.00A {Pseudomonas aeruginosa} SCOP: a.100.1.2 c.2.1.6 | Back alignment and structure |
|---|
Probab=96.61 E-value=0.013 Score=53.47 Aligned_cols=65 Identities=15% Similarity=0.103 Sum_probs=45.0
Q ss_pred CcEEEEEcCCChhHHHHHHHHHhcccCCCCCCeEEEEEecccchhhhhhhHhhhhhhccCCccceEEeCCHHHHhCCCcE
Q 019990 5 PLRVLVTGAAGQIGYALVPMIARGIMLGPDQPVILHMLDIEPAAEALNGVKMELIDAAFPLLKGVVATTDVVEACKDVNI 84 (332)
Q Consensus 5 ~~kI~VtGaaG~IGs~l~~~L~~~~~~~~~~~~~i~l~D~~~~~~~~~~~~~dl~~~~~~~~~~v~~~~~~~~a~~~aDi 84 (332)
.+||+|+| +|.+|.+++..|...++ +|.++|.+.. ...... ... .+... +..++++++|+
T Consensus 16 ~~~I~IIG-~G~mG~alA~~L~~~G~-------~V~~~~~~~~--~~~~~a---~~~------G~~~~-~~~e~~~~aDv 75 (338)
T 1np3_A 16 GKKVAIIG-YGSQGHAHACNLKDSGV-------DVTVGLRSGS--ATVAKA---EAH------GLKVA-DVKTAVAAADV 75 (338)
T ss_dssp TSCEEEEC-CSHHHHHHHHHHHHTTC-------CEEEECCTTC--HHHHHH---HHT------TCEEE-CHHHHHHTCSE
T ss_pred CCEEEEEC-chHHHHHHHHHHHHCcC-------EEEEEECChH--HHHHHH---HHC------CCEEc-cHHHHHhcCCE
Confidence 57899999 79999999999988775 6888987532 111111 111 12223 66778899999
Q ss_pred EEEec
Q 019990 85 AVMVG 89 (332)
Q Consensus 85 Vi~~a 89 (332)
||++.
T Consensus 76 Vilav 80 (338)
T 1np3_A 76 VMILT 80 (338)
T ss_dssp EEECS
T ss_pred EEEeC
Confidence 99873
|
| >3c7a_A Octopine dehydrogenase; L) stereospecific opine dehydrogenas, oxidorecutase, oxidoreductase; HET: NAD; 2.10A {Pecten maximus} PDB: 3c7c_B* 3c7d_B* 3iqd_B* | Back alignment and structure |
|---|
Probab=96.60 E-value=0.0057 Score=57.16 Aligned_cols=72 Identities=19% Similarity=0.121 Sum_probs=45.8
Q ss_pred CcEEEEEcCCChhHHHHHHHHHh-cccCCCCCCeEEEEEe---cccchhhhhhhHhhhhhh----c--cC-C-----ccc
Q 019990 5 PLRVLVTGAAGQIGYALVPMIAR-GIMLGPDQPVILHMLD---IEPAAEALNGVKMELIDA----A--FP-L-----LKG 68 (332)
Q Consensus 5 ~~kI~VtGaaG~IGs~l~~~L~~-~~~~~~~~~~~i~l~D---~~~~~~~~~~~~~dl~~~----~--~~-~-----~~~ 68 (332)
+|||+|+| +|.+|..++..|.. .|+ +|.++| ++. +.+... +... . .. . ...
T Consensus 2 ~mkI~ViG-aG~~G~~~a~~La~~~G~-------~V~~~~~~~r~~--~~~~~~---~~~~g~~~~~~~~~~~~~~~~~~ 68 (404)
T 3c7a_A 2 TVKVCVCG-GGNGAHTLSGLAASRDGV-------EVRVLTLFADEA--ERWTKA---LGADELTVIVNEKDGTQTEVKSR 68 (404)
T ss_dssp CEEEEEEC-CSHHHHHHHHHHTTSTTE-------EEEEECCSTTHH--HHHHHH---HTTSCEEEEEECSSSCEEEEEEC
T ss_pred CceEEEEC-CCHHHHHHHHHHHhCCCC-------EEEEEeCCCCcH--HHHHHH---HhhccceeeeecCCCccceeecc
Confidence 47999999 69999999999977 465 899999 532 122210 1110 0 00 0 011
Q ss_pred e-EEeCCHHHHhCCCcEEEEec
Q 019990 69 V-VATTDVVEACKDVNIAVMVG 89 (332)
Q Consensus 69 v-~~~~~~~~a~~~aDiVi~~a 89 (332)
+ ..+++..++++++|+||++.
T Consensus 69 ~~~~~~~~~~a~~~aD~Vilav 90 (404)
T 3c7a_A 69 PKVITKDPEIAISGADVVILTV 90 (404)
T ss_dssp CSEEESCHHHHHTTCSEEEECS
T ss_pred ceEEeCCHHHHhCCCCEEEEeC
Confidence 2 14557777889999999874
|
| >2ozp_A N-acetyl-gamma-glutamyl-phosphate reductase; amino acid biosynthesis, structural genomics, riken structur genomics/proteomics initiative; 2.01A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=96.59 E-value=0.0037 Score=57.37 Aligned_cols=35 Identities=11% Similarity=0.181 Sum_probs=26.3
Q ss_pred CCCcEEEEEcCCChhHHHHHHHHHhcccCCCCCCeEEEEEe
Q 019990 3 KNPLRVLVTGAAGQIGYALVPMIARGIMLGPDQPVILHMLD 43 (332)
Q Consensus 3 ~~~~kI~VtGaaG~IGs~l~~~L~~~~~~~~~~~~~i~l~D 43 (332)
++|+||+|+||+|.||+.++..|.+... .+++.+.
T Consensus 2 ~~~~kV~IiGAtG~iG~~llr~L~~~p~------~elv~v~ 36 (345)
T 2ozp_A 2 TGKKTLSIVGASGYAGGEFLRLALSHPY------LEVKQVT 36 (345)
T ss_dssp --CEEEEEETTTSHHHHHHHHHHHTCTT------EEEEEEB
T ss_pred CCCCEEEEECCCCHHHHHHHHHHHcCCC------cEEEEEE
Confidence 3468999999999999999998886542 3666554
|
| >3ktd_A Prephenate dehydrogenase; structural genomics, joint center F structural genomics, JCSG, protein structure initiative; 2.60A {Corynebacterium glutamicum atcc 13032} | Back alignment and structure |
|---|
Probab=96.54 E-value=0.0096 Score=54.45 Aligned_cols=69 Identities=16% Similarity=0.210 Sum_probs=43.6
Q ss_pred CCCC--CcEEEEEcCCChhHHHHHHHHHhcccCCCCCCeEEEEEecccchhhhhhhHhhhhhhccCCccceEEeCCHHHH
Q 019990 1 MAKN--PLRVLVTGAAGQIGYALVPMIARGIMLGPDQPVILHMLDIEPAAEALNGVKMELIDAAFPLLKGVVATTDVVEA 78 (332)
Q Consensus 1 m~~~--~~kI~VtGaaG~IGs~l~~~L~~~~~~~~~~~~~i~l~D~~~~~~~~~~~~~dl~~~~~~~~~~v~~~~~~~~a 78 (332)
|+.+ .+||+|+| .|.+|.+++..|...|+ +|.++|++. +.+.. .... .+....++.++
T Consensus 2 m~~~~~~~kIgIIG-~G~mG~slA~~L~~~G~-------~V~~~dr~~--~~~~~----a~~~------G~~~~~~~~e~ 61 (341)
T 3ktd_A 2 MTTKDISRPVCILG-LGLIGGSLLRDLHAANH-------SVFGYNRSR--SGAKS----AVDE------GFDVSADLEAT 61 (341)
T ss_dssp ----CCSSCEEEEC-CSHHHHHHHHHHHHTTC-------CEEEECSCH--HHHHH----HHHT------TCCEESCHHHH
T ss_pred CCccCCCCEEEEEe-ecHHHHHHHHHHHHCCC-------EEEEEeCCH--HHHHH----HHHc------CCeeeCCHHHH
Confidence 5543 47899999 79999999999998875 899999853 22221 1111 11223455554
Q ss_pred hC----CCcEEEEec
Q 019990 79 CK----DVNIAVMVG 89 (332)
Q Consensus 79 ~~----~aDiVi~~a 89 (332)
++ ++|+||.+.
T Consensus 62 ~~~a~~~aDlVilav 76 (341)
T 3ktd_A 62 LQRAAAEDALIVLAV 76 (341)
T ss_dssp HHHHHHTTCEEEECS
T ss_pred HHhcccCCCEEEEeC
Confidence 44 689999863
|
| >2p4q_A 6-phosphogluconate dehydrogenase, decarboxylating; rossmann fold, oxidoreductase; HET: FLC; 2.37A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=96.50 E-value=0.029 Score=53.99 Aligned_cols=70 Identities=9% Similarity=0.103 Sum_probs=47.8
Q ss_pred CcEEEEEcCCChhHHHHHHHHHhcccCCCCCCeEEEEEecccchhhhhhhHhhhhhhccCCccceEEeCCHHHHhCC---
Q 019990 5 PLRVLVTGAAGQIGYALVPMIARGIMLGPDQPVILHMLDIEPAAEALNGVKMELIDAAFPLLKGVVATTDVVEACKD--- 81 (332)
Q Consensus 5 ~~kI~VtGaaG~IGs~l~~~L~~~~~~~~~~~~~i~l~D~~~~~~~~~~~~~dl~~~~~~~~~~v~~~~~~~~a~~~--- 81 (332)
..+|+|+| +|.+|++++..|+..|+ +|.++|++. +++. ++.....+ ...+....++.+++++
T Consensus 10 ~~~IgvIG-lG~MG~~lA~~La~~G~-------~V~v~dr~~--~~~~----~l~~~~~~-~~gi~~~~s~~e~v~~l~~ 74 (497)
T 2p4q_A 10 SADFGLIG-LAVMGQNLILNAADHGF-------TVCAYNRTQ--SKVD----HFLANEAK-GKSIIGATSIEDFISKLKR 74 (497)
T ss_dssp CCSEEEEC-CSHHHHHHHHHHHHTTC-------CEEEECSSS--HHHH----HHHHTTTT-TSSEECCSSHHHHHHTSCS
T ss_pred CCCEEEEe-eHHHHHHHHHHHHHCCC-------EEEEEeCCH--HHHH----HHHccccc-CCCeEEeCCHHHHHhcCCC
Confidence 45799999 79999999999999886 799999864 2222 22210000 0234455667776666
Q ss_pred CcEEEEec
Q 019990 82 VNIAVMVG 89 (332)
Q Consensus 82 aDiVi~~a 89 (332)
+|+||++.
T Consensus 75 aDvVil~V 82 (497)
T 2p4q_A 75 PRKVMLLV 82 (497)
T ss_dssp SCEEEECC
T ss_pred CCEEEEEc
Confidence 99999874
|
| >4f3y_A DHPR, dihydrodipicolinate reductase; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.10A {Burkholderia thailandensis} | Back alignment and structure |
|---|
Probab=96.31 E-value=0.0034 Score=55.58 Aligned_cols=75 Identities=19% Similarity=0.280 Sum_probs=47.2
Q ss_pred CCcEEEEEcCCChhHHHHHHHHHhcccCCCCCCeEEE-EEecccchhhhhhhHhhhhhhccCCccceEEeCCHHHHhCCC
Q 019990 4 NPLRVLVTGAAGQIGYALVPMIARGIMLGPDQPVILH-MLDIEPAAEALNGVKMELIDAAFPLLKGVVATTDVVEACKDV 82 (332)
Q Consensus 4 ~~~kI~VtGaaG~IGs~l~~~L~~~~~~~~~~~~~i~-l~D~~~~~~~~~~~~~dl~~~~~~~~~~v~~~~~~~~a~~~a 82 (332)
+|+||+|+||+|.+|+.++..+.+..- .+++ .+|.... ...+ .|..+... ...++....++.+.+.++
T Consensus 6 ~mikV~V~Ga~G~MG~~i~~~l~~~~~------~eLv~~~d~~~~--~~~G--~d~gel~g-~~~gv~v~~dl~~ll~~~ 74 (272)
T 4f3y_A 6 SSMKIAIAGASGRMGRMLIEAVLAAPD------ATLVGALDRTGS--PQLG--QDAGAFLG-KQTGVALTDDIERVCAEA 74 (272)
T ss_dssp CCEEEEESSTTSHHHHHHHHHHHHCTT------EEEEEEBCCTTC--TTTT--SBTTTTTT-CCCSCBCBCCHHHHHHHC
T ss_pred cccEEEEECCCCHHHHHHHHHHHhCCC------CEEEEEEEecCc--cccc--ccHHHHhC-CCCCceecCCHHHHhcCC
Confidence 468999999999999999998876532 2554 4676432 1111 12221110 111455567788878899
Q ss_pred cEEEEec
Q 019990 83 NIAVMVG 89 (332)
Q Consensus 83 DiVi~~a 89 (332)
|+||...
T Consensus 75 DVVIDfT 81 (272)
T 4f3y_A 75 DYLIDFT 81 (272)
T ss_dssp SEEEECS
T ss_pred CEEEEcC
Confidence 9998763
|
| >1xyg_A Putative N-acetyl-gamma-glutamyl-phosphate reduct; structural genomics, protein structure initiative, CENT eukaryotic structural genomics; 2.19A {Arabidopsis thaliana} SCOP: c.2.1.3 d.81.1.1 PDB: 2q49_A 2cvo_A | Back alignment and structure |
|---|
Probab=96.26 E-value=0.0053 Score=56.62 Aligned_cols=33 Identities=21% Similarity=0.389 Sum_probs=26.3
Q ss_pred CcEEEEEcCCChhHHHHHHHHHhcccCCCCCCeEEEEEe
Q 019990 5 PLRVLVTGAAGQIGYALVPMIARGIMLGPDQPVILHMLD 43 (332)
Q Consensus 5 ~~kI~VtGaaG~IGs~l~~~L~~~~~~~~~~~~~i~l~D 43 (332)
++||+|+||+|.||..++..|.+... .+++.+.
T Consensus 16 ~~kV~IiGAtG~iG~~llr~L~~~p~------~elvai~ 48 (359)
T 1xyg_A 16 DIRIGLLGASGYTGAEIVRLLANHPH------FQVTLMT 48 (359)
T ss_dssp CEEEEEECCSSHHHHHHHHHHHTCSS------EEEEEEB
T ss_pred CcEEEEECcCCHHHHHHHHHHHcCCC------cEEEEEe
Confidence 36899999999999999999887543 3666654
|
| >2hjs_A USG-1 protein homolog; aspartate-semialdehyde dehydrogenase, probable hydrolase, PS aeruginosa, structurual genomics; 2.20A {Pseudomonas aeruginosa} SCOP: c.2.1.3 d.81.1.1 | Back alignment and structure |
|---|
Probab=96.25 E-value=0.012 Score=53.75 Aligned_cols=25 Identities=44% Similarity=0.667 Sum_probs=21.9
Q ss_pred CcEEEEEcCCChhHHHHHHHHHhcc
Q 019990 5 PLRVLVTGAAGQIGYALVPMIARGI 29 (332)
Q Consensus 5 ~~kI~VtGaaG~IGs~l~~~L~~~~ 29 (332)
++||+|+||+|.||+.++..|.+.+
T Consensus 6 ~~kV~IiGAtG~iG~~llr~L~~~~ 30 (340)
T 2hjs_A 6 PLNVAVVGATGSVGEALVGLLDERD 30 (340)
T ss_dssp CCCEEEETTTSHHHHHHHHHHHHTT
T ss_pred CcEEEEECCCCHHHHHHHHHHHhCC
Confidence 4689999999999999999888544
|
| >2gk4_A Conserved hypothetical protein; alpha-beta-alpha sandwich, flavoprotein, structural genomics protein structure initiative; 1.83A {Streptococcus pneumoniae} | Back alignment and structure |
|---|
Probab=96.23 E-value=0.0027 Score=54.72 Aligned_cols=74 Identities=16% Similarity=0.284 Sum_probs=46.5
Q ss_pred CCcEEEEEcC----------------CChhHHHHHHHHHhcccCCCCCCeEEEEEecccchhhhhhhHhhhhhhccCCcc
Q 019990 4 NPLRVLVTGA----------------AGQIGYALVPMIARGIMLGPDQPVILHMLDIEPAAEALNGVKMELIDAAFPLLK 67 (332)
Q Consensus 4 ~~~kI~VtGa----------------aG~IGs~l~~~L~~~~~~~~~~~~~i~l~D~~~~~~~~~~~~~dl~~~~~~~~~ 67 (332)
..++|+|||| +|.+|.++|..++..|. +|.++..... +... .... . ...
T Consensus 2 ~gk~vlVTgG~T~E~IDpVR~ItN~SSG~mG~aiA~~~~~~Ga-------~V~lv~~~~~---~~~~---~~~~-~-~~~ 66 (232)
T 2gk4_A 2 NAMKILVTSGGTSEAIDSVRSITNHSTGHLGKIITETLLSAGY-------EVCLITTKRA---LKPE---PHPN-L-SIR 66 (232)
T ss_dssp -CCEEEEECSBCEEESSSSEEEEECCCCHHHHHHHHHHHHTTC-------EEEEEECTTS---CCCC---CCTT-E-EEE
T ss_pred CCCEEEEeCCCcccccCceeeccCCCCCHHHHHHHHHHHHCCC-------EEEEEeCCcc---cccc---CCCC-e-EEE
Confidence 3578999999 89999999999999886 8999987532 1100 0000 0 001
Q ss_pred ceEEeCCH----HHHhCCCcEEEEecCCC
Q 019990 68 GVVATTDV----VEACKDVNIAVMVGGFP 92 (332)
Q Consensus 68 ~v~~~~~~----~~a~~~aDiVi~~ag~~ 92 (332)
++....++ .+.+.++|++|+.|++.
T Consensus 67 ~v~s~~em~~~v~~~~~~~Dili~aAAvs 95 (232)
T 2gk4_A 67 EITNTKDLLIEMQERVQDYQVLIHSMAVS 95 (232)
T ss_dssp ECCSHHHHHHHHHHHGGGCSEEEECSBCC
T ss_pred EHhHHHHHHHHHHHhcCCCCEEEEcCccc
Confidence 11111122 23356899999999875
|
| >2i99_A MU-crystallin homolog; thyroid hormine binding protein, oxidoreductase; HET: NDP; 2.60A {Homo sapiens} | Back alignment and structure |
|---|
Probab=96.22 E-value=0.015 Score=52.38 Aligned_cols=70 Identities=14% Similarity=0.171 Sum_probs=48.6
Q ss_pred CCcEEEEEcCCChhHHHHHHHHHhc-ccCCCCCCeEEEEEecccchhhhhhhHhhhhhhccCCccceEEeCCHHHHhCCC
Q 019990 4 NPLRVLVTGAAGQIGYALVPMIARG-IMLGPDQPVILHMLDIEPAAEALNGVKMELIDAAFPLLKGVVATTDVVEACKDV 82 (332)
Q Consensus 4 ~~~kI~VtGaaG~IGs~l~~~L~~~-~~~~~~~~~~i~l~D~~~~~~~~~~~~~dl~~~~~~~~~~v~~~~~~~~a~~~a 82 (332)
+.++|+|+| +|.+|..++..|... ++ .+|.++|++. ++.+....++. .++....++.++++++
T Consensus 134 ~~~~igiIG-~G~~g~~~a~~l~~~~g~------~~V~v~dr~~--~~~~~l~~~~~-------~~~~~~~~~~e~v~~a 197 (312)
T 2i99_A 134 SSEVLCILG-AGVQAYSHYEIFTEQFSF------KEVRIWNRTK--ENAEKFADTVQ-------GEVRVCSSVQEAVAGA 197 (312)
T ss_dssp TCCEEEEEC-CSHHHHHHHHHHHHHCCC------SEEEEECSSH--HHHHHHHHHSS-------SCCEECSSHHHHHTTC
T ss_pred CCcEEEEEC-CcHHHHHHHHHHHHhCCC------cEEEEEcCCH--HHHHHHHHHhh-------CCeEEeCCHHHHHhcC
Confidence 467999999 799999999998765 43 2799999853 23332221111 0244456788889999
Q ss_pred cEEEEec
Q 019990 83 NIAVMVG 89 (332)
Q Consensus 83 DiVi~~a 89 (332)
|+|+.+.
T Consensus 198 DiVi~at 204 (312)
T 2i99_A 198 DVIITVT 204 (312)
T ss_dssp SEEEECC
T ss_pred CEEEEEe
Confidence 9999874
|
| >3g17_A Similar to 2-dehydropantoate 2-reductase; structural genomics, putative 2-dehydropantoate 2-reductase, protein structure initiative; 2.30A {Staphylococcus aureus subsp} | Back alignment and structure |
|---|
Probab=96.18 E-value=0.0044 Score=55.40 Aligned_cols=98 Identities=12% Similarity=0.210 Sum_probs=56.4
Q ss_pred cEEEEEcCCChhHHHHHHHHHhcccCCCCCCeEEEEEecccchhhhhhhHhhhhhhccCCccceEEeCCHHHHh-CCCcE
Q 019990 6 LRVLVTGAAGQIGYALVPMIARGIMLGPDQPVILHMLDIEPAAEALNGVKMELIDAAFPLLKGVVATTDVVEAC-KDVNI 84 (332)
Q Consensus 6 ~kI~VtGaaG~IGs~l~~~L~~~~~~~~~~~~~i~l~D~~~~~~~~~~~~~dl~~~~~~~~~~v~~~~~~~~a~-~~aDi 84 (332)
|||+|+| +|.+|+.++..|.+.+. +|.+++++. +.+. +..........+. .+..+++ .++|+
T Consensus 3 mkI~iiG-aGa~G~~~a~~L~~~g~-------~V~~~~r~~--~~~~-----~~~~~g~~~~~~~--~~~~~~~~~~~D~ 65 (294)
T 3g17_A 3 LSVAIIG-PGAVGTTIAYELQQSLP-------HTTLIGRHA--KTIT-----YYTVPHAPAQDIV--VKGYEDVTNTFDV 65 (294)
T ss_dssp CCEEEEC-CSHHHHHHHHHHHHHCT-------TCEEEESSC--EEEE-----EESSTTSCCEEEE--EEEGGGCCSCEEE
T ss_pred cEEEEEC-CCHHHHHHHHHHHHCCC-------eEEEEEecc--CcEE-----EEecCCeecccee--cCchHhcCCCCCE
Confidence 6899999 69999999999988775 688888753 1221 1110000111222 2333444 78999
Q ss_pred EEEecCCCCCCCCChhHHHhhhHHHHHHHHHHHHhhcCCCcEEEEEeCChhh
Q 019990 85 AVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEKHAAPNCKVLVVANPANT 136 (332)
Q Consensus 85 Vi~~ag~~~~~~~~~~~~~~~N~~~~~~i~~~i~~~~~~~~~viv~snp~~~ 136 (332)
||++. ++. + +.++++.++.+-.++..++.+.|-++.
T Consensus 66 vilav----k~~----~--------~~~~l~~l~~~l~~~~~iv~~~nGi~~ 101 (294)
T 3g17_A 66 IIIAV----KTH----Q--------LDAVIPHLTYLAHEDTLIILAQNGYGQ 101 (294)
T ss_dssp EEECS----CGG----G--------HHHHGGGHHHHEEEEEEEEECCSSCCC
T ss_pred EEEeC----Ccc----C--------HHHHHHHHHHhhCCCCEEEEeccCccc
Confidence 99874 211 1 223344444443245566777787654
|
| >1i36_A Conserved hypothetical protein MTH1747; NADP binding domain, protein NADP complex, structural genomics, PSI; HET: NAP; 2.00A {Methanothermobacterthermautotrophicus} SCOP: a.100.1.8 c.2.1.6 | Back alignment and structure |
|---|
Probab=96.15 E-value=0.0075 Score=52.70 Aligned_cols=64 Identities=14% Similarity=0.099 Sum_probs=43.2
Q ss_pred cEEEEEcCCChhHHHHHHHHHhcccCCCCCCeEEEEEecccchhhhhhhHhhhhhhccCCccceEEeCCHHHHhCCCcEE
Q 019990 6 LRVLVTGAAGQIGYALVPMIARGIMLGPDQPVILHMLDIEPAAEALNGVKMELIDAAFPLLKGVVATTDVVEACKDVNIA 85 (332)
Q Consensus 6 ~kI~VtGaaG~IGs~l~~~L~~~~~~~~~~~~~i~l~D~~~~~~~~~~~~~dl~~~~~~~~~~v~~~~~~~~a~~~aDiV 85 (332)
|||+|+| +|.+|+.++..|...++ +|.++|...+.+.+ ..+... .+. .+..++++++|+|
T Consensus 1 M~I~iIG-~G~mG~~la~~l~~~g~-------~V~~~~~~~~~~~~----~~~~~~------g~~--~~~~~~~~~aDvv 60 (264)
T 1i36_A 1 LRVGFIG-FGEVAQTLASRLRSRGV-------EVVTSLEGRSPSTI----ERARTV------GVT--ETSEEDVYSCPVV 60 (264)
T ss_dssp CEEEEES-CSHHHHHHHHHHHHTTC-------EEEECCTTCCHHHH----HHHHHH------TCE--ECCHHHHHTSSEE
T ss_pred CeEEEEe-chHHHHHHHHHHHHCCC-------eEEEeCCccCHHHH----HHHHHC------CCc--CCHHHHHhcCCEE
Confidence 4899999 79999999999998775 78888762111112 122211 122 3455678899999
Q ss_pred EEec
Q 019990 86 VMVG 89 (332)
Q Consensus 86 i~~a 89 (332)
|++.
T Consensus 61 i~~v 64 (264)
T 1i36_A 61 ISAV 64 (264)
T ss_dssp EECS
T ss_pred EEEC
Confidence 9874
|
| >4g65_A TRK system potassium uptake protein TRKA; structural genomics, center for structural genomics of infec diseases, csgid, niaid; HET: MSE; 2.09A {Vibrio vulnificus} | Back alignment and structure |
|---|
Probab=96.11 E-value=0.0033 Score=60.04 Aligned_cols=73 Identities=21% Similarity=0.313 Sum_probs=46.6
Q ss_pred CCcEEEEEcCCChhHHHHHHHHHhcccCCCCCCeEEEEEecccchhhhhhhHhhhhhhccCCccceEEeCCHHHH-hCCC
Q 019990 4 NPLRVLVTGAAGQIGYALVPMIARGIMLGPDQPVILHMLDIEPAAEALNGVKMELIDAAFPLLKGVVATTDVVEA-CKDV 82 (332)
Q Consensus 4 ~~~kI~VtGaaG~IGs~l~~~L~~~~~~~~~~~~~i~l~D~~~~~~~~~~~~~dl~~~~~~~~~~v~~~~~~~~a-~~~a 82 (332)
+.|||.|.| +|.+|++++..|...++ +++++|.++ ++++....++ +.. ...++-+...-+.+| +++|
T Consensus 2 ~~M~iiI~G-~G~vG~~la~~L~~~~~-------~v~vId~d~--~~~~~~~~~~-~~~-~i~Gd~~~~~~L~~Agi~~a 69 (461)
T 4g65_A 2 NAMKIIILG-AGQVGGTLAENLVGENN-------DITIVDKDG--DRLRELQDKY-DLR-VVNGHASHPDVLHEAGAQDA 69 (461)
T ss_dssp CCEEEEEEC-CSHHHHHHHHHTCSTTE-------EEEEEESCH--HHHHHHHHHS-SCE-EEESCTTCHHHHHHHTTTTC
T ss_pred CcCEEEEEC-CCHHHHHHHHHHHHCCC-------CEEEEECCH--HHHHHHHHhc-CcE-EEEEcCCCHHHHHhcCCCcC
Confidence 568999999 69999999999988775 899999864 3333211111 110 112233333335555 6789
Q ss_pred cEEEEe
Q 019990 83 NIAVMV 88 (332)
Q Consensus 83 DiVi~~ 88 (332)
|++|.+
T Consensus 70 d~~ia~ 75 (461)
T 4g65_A 70 DMLVAV 75 (461)
T ss_dssp SEEEEC
T ss_pred CEEEEE
Confidence 988764
|
| >3q2i_A Dehydrogenase; rossmann fold, UDP-sugar binding, NAD binding oxidoreductase; HET: NAD HP7; 1.50A {Chromobacterium violaceum} PDB: 3q2k_A* | Back alignment and structure |
|---|
Probab=96.08 E-value=0.017 Score=52.92 Aligned_cols=69 Identities=19% Similarity=0.334 Sum_probs=45.0
Q ss_pred CCCcEEEEEcCCChhHHHHHHHHHhc-ccCCCCCCeEE-EEEecccchhhhhhhHhhhhhhccCCccceEEeCCHHHHhC
Q 019990 3 KNPLRVLVTGAAGQIGYALVPMIARG-IMLGPDQPVIL-HMLDIEPAAEALNGVKMELIDAAFPLLKGVVATTDVVEACK 80 (332)
Q Consensus 3 ~~~~kI~VtGaaG~IGs~l~~~L~~~-~~~~~~~~~~i-~l~D~~~~~~~~~~~~~dl~~~~~~~~~~v~~~~~~~~a~~ 80 (332)
.+++||+|+| +|.+|...+..|... .- .++ .++|.+. +++......+ ++....+..+.++
T Consensus 11 ~~~~rvgiiG-~G~~g~~~~~~l~~~~~~------~~lvav~d~~~--~~~~~~~~~~---------~~~~~~~~~~ll~ 72 (354)
T 3q2i_A 11 DRKIRFALVG-CGRIANNHFGALEKHADR------AELIDVCDIDP--AALKAAVERT---------GARGHASLTDMLA 72 (354)
T ss_dssp SSCEEEEEEC-CSTTHHHHHHHHHHTTTT------EEEEEEECSSH--HHHHHHHHHH---------CCEEESCHHHHHH
T ss_pred CCcceEEEEc-CcHHHHHHHHHHHhCCCC------eEEEEEEcCCH--HHHHHHHHHc---------CCceeCCHHHHhc
Confidence 3578999999 799999999888765 21 254 4788753 2332221111 1344567777775
Q ss_pred --CCcEEEEec
Q 019990 81 --DVNIAVMVG 89 (332)
Q Consensus 81 --~aDiVi~~a 89 (332)
++|+|+++.
T Consensus 73 ~~~~D~V~i~t 83 (354)
T 3q2i_A 73 QTDADIVILTT 83 (354)
T ss_dssp HCCCSEEEECS
T ss_pred CCCCCEEEECC
Confidence 799999863
|
| >2eez_A Alanine dehydrogenase; TTHA0216, structural genomic NPPSFA, national project on protein structural and function analyses; 2.71A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=96.06 E-value=0.0077 Score=55.70 Aligned_cols=76 Identities=12% Similarity=0.206 Sum_probs=48.0
Q ss_pred CCcEEEEEcCCChhHHHHHHHHHhcccCCCCCCeEEEEEecccchhhhhhhHhhhhhhccCCccceEEeCCHHHHhCCCc
Q 019990 4 NPLRVLVTGAAGQIGYALVPMIARGIMLGPDQPVILHMLDIEPAAEALNGVKMELIDAAFPLLKGVVATTDVVEACKDVN 83 (332)
Q Consensus 4 ~~~kI~VtGaaG~IGs~l~~~L~~~~~~~~~~~~~i~l~D~~~~~~~~~~~~~dl~~~~~~~~~~v~~~~~~~~a~~~aD 83 (332)
++++|+|+|+ |.||..++..+...|. +|.++|++. +++... .+. .......+.....++.+.++++|
T Consensus 165 ~~~~V~ViGa-G~iG~~~a~~l~~~Ga-------~V~~~d~~~--~~~~~~-~~~--~g~~~~~~~~~~~~l~~~~~~~D 231 (369)
T 2eez_A 165 APASVVILGG-GTVGTNAAKIALGMGA-------QVTILDVNH--KRLQYL-DDV--FGGRVITLTATEANIKKSVQHAD 231 (369)
T ss_dssp CCCEEEEECC-SHHHHHHHHHHHHTTC-------EEEEEESCH--HHHHHH-HHH--TTTSEEEEECCHHHHHHHHHHCS
T ss_pred CCCEEEEECC-CHHHHHHHHHHHhCCC-------EEEEEECCH--HHHHHH-HHh--cCceEEEecCCHHHHHHHHhCCC
Confidence 4579999996 9999999999988775 899999864 222211 110 10010011112234566788999
Q ss_pred EEEEecCCC
Q 019990 84 IAVMVGGFP 92 (332)
Q Consensus 84 iVi~~ag~~ 92 (332)
+||.+++.+
T Consensus 232 vVi~~~g~~ 240 (369)
T 2eez_A 232 LLIGAVLVP 240 (369)
T ss_dssp EEEECCC--
T ss_pred EEEECCCCC
Confidence 999998765
|
| >3ijp_A DHPR, dihydrodipicolinate reductase; ssgcid, SBRI, decode biostructures, niaid, amino-acid biosynthesis, cytoplasm; HET: NAP; 2.30A {Bartonella henselae} | Back alignment and structure |
|---|
Probab=96.05 E-value=0.008 Score=53.50 Aligned_cols=75 Identities=23% Similarity=0.197 Sum_probs=46.2
Q ss_pred CCcEEEEEcCCChhHHHHHHHHHhcccCCCCCCeEE-EEEecccchhhhhhhHhhhhhhccCCccceEEeCCHHHHhCCC
Q 019990 4 NPLRVLVTGAAGQIGYALVPMIARGIMLGPDQPVIL-HMLDIEPAAEALNGVKMELIDAAFPLLKGVVATTDVVEACKDV 82 (332)
Q Consensus 4 ~~~kI~VtGaaG~IGs~l~~~L~~~~~~~~~~~~~i-~l~D~~~~~~~~~~~~~dl~~~~~~~~~~v~~~~~~~~a~~~a 82 (332)
+|+||+|+||+|.+|+.++..+.+..- .++ ..+|.... ...| .|..........++..+.++.+.+.++
T Consensus 20 ~~irV~V~Ga~GrMGr~i~~~v~~~~~------~eLvg~vd~~~~--~~~G--~d~gel~G~~~~gv~v~~dl~~ll~~a 89 (288)
T 3ijp_A 20 GSMRLTVVGANGRMGRELITAIQRRKD------VELCAVLVRKGS--SFVD--KDASILIGSDFLGVRITDDPESAFSNT 89 (288)
T ss_dssp -CEEEEESSTTSHHHHHHHHHHHTCSS------EEEEEEBCCTTC--TTTT--SBGGGGTTCSCCSCBCBSCHHHHTTSC
T ss_pred CCeEEEEECCCCHHHHHHHHHHHhCCC------CEEEEEEecCCc--cccc--cchHHhhccCcCCceeeCCHHHHhcCC
Confidence 467999999999999999998876432 143 45576431 1111 222221110123455567888888899
Q ss_pred cEEEEe
Q 019990 83 NIAVMV 88 (332)
Q Consensus 83 DiVi~~ 88 (332)
|+||-.
T Consensus 90 DVvIDF 95 (288)
T 3ijp_A 90 EGILDF 95 (288)
T ss_dssp SEEEEC
T ss_pred CEEEEc
Confidence 999864
|
| >3e9m_A Oxidoreductase, GFO/IDH/MOCA family; GFO/LDH/MOCA, PSI-II, dimeric dihydodiol dehydrogenase, structural genomics; 2.70A {Enterococcus faecalis} | Back alignment and structure |
|---|
Probab=96.04 E-value=0.01 Score=53.92 Aligned_cols=72 Identities=22% Similarity=0.260 Sum_probs=44.7
Q ss_pred CCCCCcEEEEEcCCChhHHHHHHHHHhcccCCCCCCeEEE-EEecccchhhhhhhHhhhhhhccCCccceEEeCCHHHHh
Q 019990 1 MAKNPLRVLVTGAAGQIGYALVPMIARGIMLGPDQPVILH-MLDIEPAAEALNGVKMELIDAAFPLLKGVVATTDVVEAC 79 (332)
Q Consensus 1 m~~~~~kI~VtGaaG~IGs~l~~~L~~~~~~~~~~~~~i~-l~D~~~~~~~~~~~~~dl~~~~~~~~~~v~~~~~~~~a~ 79 (332)
|+++++||+|+| +|.+|..++..|.+..- .+++ ++|.+. +++......+ ..+ ....+..+.+
T Consensus 1 M~m~~~~igiiG-~G~~g~~~~~~l~~~~~------~~l~av~d~~~--~~~~~~~~~~---~~~-----~~~~~~~~ll 63 (330)
T 3e9m_A 1 MSLDKIRYGIMS-TAQIVPRFVAGLRESAQ------AEVRGIASRRL--ENAQKMAKEL---AIP-----VAYGSYEELC 63 (330)
T ss_dssp --CCCEEEEECS-CCTTHHHHHHHHHHSSS------EEEEEEBCSSS--HHHHHHHHHT---TCC-----CCBSSHHHHH
T ss_pred CCCCeEEEEEEC-chHHHHHHHHHHHhCCC------cEEEEEEeCCH--HHHHHHHHHc---CCC-----ceeCCHHHHh
Confidence 777889999999 69999999998877431 2554 678753 2232221111 000 2245677766
Q ss_pred C--CCcEEEEec
Q 019990 80 K--DVNIAVMVG 89 (332)
Q Consensus 80 ~--~aDiVi~~a 89 (332)
. ++|+|+++.
T Consensus 64 ~~~~~D~V~i~t 75 (330)
T 3e9m_A 64 KDETIDIIYIPT 75 (330)
T ss_dssp HCTTCSEEEECC
T ss_pred cCCCCCEEEEcC
Confidence 6 789999863
|
| >3pwk_A Aspartate-semialdehyde dehydrogenase; NADP binding, oxidoreductase-oxidoreductase I complex; HET: 25A L14; 1.50A {Streptococcus pneumoniae} PDB: 2gyy_A* 2gz2_A* 2gz3_A* 2gz1_A* 3pws_A* 3pyl_A 3pyx_A* 3pzb_A* 3q11_A* 3q1l_A | Back alignment and structure |
|---|
Probab=95.96 E-value=0.008 Score=55.43 Aligned_cols=72 Identities=21% Similarity=0.354 Sum_probs=42.1
Q ss_pred CcEEEEEcCCChhHHHHHHHHHhcccCCCCCCeEEEEEecccchhhhhhhHhhhhhhccCCccceEEeCCHHHHhCCCcE
Q 019990 5 PLRVLVTGAAGQIGYALVPMIARGIMLGPDQPVILHMLDIEPAAEALNGVKMELIDAAFPLLKGVVATTDVVEACKDVNI 84 (332)
Q Consensus 5 ~~kI~VtGaaG~IGs~l~~~L~~~~~~~~~~~~~i~l~D~~~~~~~~~~~~~dl~~~~~~~~~~v~~~~~~~~a~~~aDi 84 (332)
++||+|+||+|.+|..|+..|.+.++ +..++.++.... ..|....+.. .++.......+.+.++|+
T Consensus 2 ~~kVaIvGATG~vG~eLlrlL~~~~~----p~~el~~~as~~----saG~~~~~~~------~~~~~~~~~~~~~~~~Dv 67 (366)
T 3pwk_A 2 GYTVAVVGATGAVGAQMIKMLEESTL----PIDKIRYLASAR----SAGKSLKFKD------QDITIEETTETAFEGVDI 67 (366)
T ss_dssp CEEEEEETTTSHHHHHHHHHHHTCCC----CEEEEEEEECTT----TTTCEEEETT------EEEEEEECCTTTTTTCSE
T ss_pred CcEEEEECCCChHHHHHHHHHhcCCC----CcEEEEEEEccc----cCCCcceecC------CCceEeeCCHHHhcCCCE
Confidence 47899999999999999998877532 113677776422 2222211111 122221111234678898
Q ss_pred EEEecC
Q 019990 85 AVMVGG 90 (332)
Q Consensus 85 Vi~~ag 90 (332)
||.+.+
T Consensus 68 vf~a~~ 73 (366)
T 3pwk_A 68 ALFSAG 73 (366)
T ss_dssp EEECSC
T ss_pred EEECCC
Confidence 888754
|
| >2ep5_A 350AA long hypothetical aspartate-semialdehyde dehydrogenase; oxidoreductase, structural genomics, NPPSFA; 2.40A {Sulfolobus tokodaii} | Back alignment and structure |
|---|
Probab=95.95 E-value=0.008 Score=55.18 Aligned_cols=35 Identities=23% Similarity=0.424 Sum_probs=26.9
Q ss_pred CCCCcEEEEEcCCChhHHHHHHHHHhcccCCCCCCeEEEEE
Q 019990 2 AKNPLRVLVTGAAGQIGYALVPMIARGIMLGPDQPVILHML 42 (332)
Q Consensus 2 ~~~~~kI~VtGaaG~IGs~l~~~L~~~~~~~~~~~~~i~l~ 42 (332)
+++++||+|+||+|.+|+.++..|..... .+++.+
T Consensus 1 m~~~~kV~IiGAtG~iG~~llr~L~~~p~------~elvai 35 (350)
T 2ep5_A 1 MADKIKVSLLGSTGMVGQKMVKMLAKHPY------LELVKV 35 (350)
T ss_dssp -CCCEEEEEESCSSHHHHHHHHHHTTCSS------EEEEEE
T ss_pred CCCCcEEEEECcCCHHHHHHHHHHHhCCC------cEEEEE
Confidence 04568999999999999999998876432 367666
|
| >1vkn_A N-acetyl-gamma-glutamyl-phosphate reductase; TM1782, structu genomics, JCSG, PSI, protein structure initiative, joint CE structural genomics; 1.80A {Thermotoga maritima} SCOP: c.2.1.3 d.81.1.1 | Back alignment and structure |
|---|
Probab=95.95 E-value=0.0095 Score=54.56 Aligned_cols=75 Identities=19% Similarity=0.222 Sum_probs=44.7
Q ss_pred CCcEEEEEcCCChhHHHHHHHHHhcccCCCCCCeEEEEEecccchhhhhhhHhhhhhhccCCccceEEe-CCHHHHhCCC
Q 019990 4 NPLRVLVTGAAGQIGYALVPMIARGIMLGPDQPVILHMLDIEPAAEALNGVKMELIDAAFPLLKGVVAT-TDVVEACKDV 82 (332)
Q Consensus 4 ~~~kI~VtGaaG~IGs~l~~~L~~~~~~~~~~~~~i~l~D~~~~~~~~~~~~~dl~~~~~~~~~~v~~~-~~~~~a~~~a 82 (332)
.|.||+|+||+|.+|..++..|..... .++..+.... ..|...+-.+..+. .++... .+..+...++
T Consensus 12 ~~~~V~IvGAtG~vG~ellrlL~~hP~------~el~~l~S~~----~aG~~~~~~~p~~~--~~l~~~~~~~~~~~~~~ 79 (351)
T 1vkn_A 12 HMIRAGIIGATGYTGLELVRLLKNHPE------AKITYLSSRT----YAGKKLEEIFPSTL--ENSILSEFDPEKVSKNC 79 (351)
T ss_dssp CCEEEEEESTTSHHHHHHHHHHHHCTT------EEEEEEECST----TTTSBHHHHCGGGC--CCCBCBCCCHHHHHHHC
T ss_pred ceeEEEEECCCCHHHHHHHHHHHcCCC------cEEEEEeCcc----cccCChHHhChhhc--cCceEEeCCHHHhhcCC
Confidence 377999999999999999999987653 3787776432 22222210011111 222221 1333333789
Q ss_pred cEEEEecC
Q 019990 83 NIAVMVGG 90 (332)
Q Consensus 83 DiVi~~ag 90 (332)
|+||++.+
T Consensus 80 Dvvf~alp 87 (351)
T 1vkn_A 80 DVLFTALP 87 (351)
T ss_dssp SEEEECCS
T ss_pred CEEEECCC
Confidence 99998754
|
| >3ba1_A HPPR, hydroxyphenylpyruvate reductase; two domain protein, substrate binding domain, cofactor bindi domain, oxidoreductase; 1.47A {Solenostemon scutellarioides} PDB: 3baz_A* | Back alignment and structure |
|---|
Probab=95.93 E-value=0.017 Score=52.61 Aligned_cols=61 Identities=20% Similarity=0.160 Sum_probs=45.9
Q ss_pred CCcEEEEEcCCChhHHHHHHHHHhcccCCCCCCeEEEEEecccchhhhhhhHhhhhhhccCCccceEEeCCHHHHhCCCc
Q 019990 4 NPLRVLVTGAAGQIGYALVPMIARGIMLGPDQPVILHMLDIEPAAEALNGVKMELIDAAFPLLKGVVATTDVVEACKDVN 83 (332)
Q Consensus 4 ~~~kI~VtGaaG~IGs~l~~~L~~~~~~~~~~~~~i~l~D~~~~~~~~~~~~~dl~~~~~~~~~~v~~~~~~~~a~~~aD 83 (332)
..++|+|+| .|.||+.++..|...|. +|..+|+... ... .+....++.+.++++|
T Consensus 163 ~g~~vgIIG-~G~iG~~vA~~l~~~G~-------~V~~~dr~~~--~~~---------------g~~~~~~l~ell~~aD 217 (333)
T 3ba1_A 163 SGKRVGIIG-LGRIGLAVAERAEAFDC-------PISYFSRSKK--PNT---------------NYTYYGSVVELASNSD 217 (333)
T ss_dssp TTCCEEEEC-CSHHHHHHHHHHHTTTC-------CEEEECSSCC--TTC---------------CSEEESCHHHHHHTCS
T ss_pred CCCEEEEEC-CCHHHHHHHHHHHHCCC-------EEEEECCCch--hcc---------------CceecCCHHHHHhcCC
Confidence 357899999 79999999999988775 7899997542 111 1122456778889999
Q ss_pred EEEEec
Q 019990 84 IAVMVG 89 (332)
Q Consensus 84 iVi~~a 89 (332)
+|+.+.
T Consensus 218 vVil~v 223 (333)
T 3ba1_A 218 ILVVAC 223 (333)
T ss_dssp EEEECS
T ss_pred EEEEec
Confidence 999875
|
| >2hk9_A Shikimate dehydrogenase; shikimate pathway, drug design, oxidoreductase; HET: ATR SKM NAP; 2.20A {Aquifex aeolicus} PDB: 2hk8_A 2hk7_A | Back alignment and structure |
|---|
Probab=95.91 E-value=0.018 Score=50.95 Aligned_cols=69 Identities=16% Similarity=0.164 Sum_probs=47.7
Q ss_pred CcEEEEEcCCChhHHHHHHHHHhcccCCCCCCeEEEEEecccchhhhhhhHhhhhhhccCCccceEEeCCHHHHhCCCcE
Q 019990 5 PLRVLVTGAAGQIGYALVPMIARGIMLGPDQPVILHMLDIEPAAEALNGVKMELIDAAFPLLKGVVATTDVVEACKDVNI 84 (332)
Q Consensus 5 ~~kI~VtGaaG~IGs~l~~~L~~~~~~~~~~~~~i~l~D~~~~~~~~~~~~~dl~~~~~~~~~~v~~~~~~~~a~~~aDi 84 (332)
.++|+|+| +|.+|++++..|.+.+. +|.++|++. ++++ ++... + .+....++.+.++++|+
T Consensus 129 ~~~v~iiG-aG~~g~aia~~L~~~g~-------~V~v~~r~~--~~~~----~l~~~---~--g~~~~~~~~~~~~~aDi 189 (275)
T 2hk9_A 129 EKSILVLG-AGGASRAVIYALVKEGA-------KVFLWNRTK--EKAI----KLAQK---F--PLEVVNSPEEVIDKVQV 189 (275)
T ss_dssp GSEEEEEC-CSHHHHHHHHHHHHHTC-------EEEEECSSH--HHHH----HHTTT---S--CEEECSCGGGTGGGCSE
T ss_pred CCEEEEEC-chHHHHHHHHHHHHcCC-------EEEEEECCH--HHHH----HHHHH---c--CCeeehhHHhhhcCCCE
Confidence 47899999 69999999999988774 799999853 2222 22111 0 12333356677889999
Q ss_pred EEEecCCC
Q 019990 85 AVMVGGFP 92 (332)
Q Consensus 85 Vi~~ag~~ 92 (332)
||.+....
T Consensus 190 Vi~atp~~ 197 (275)
T 2hk9_A 190 IVNTTSVG 197 (275)
T ss_dssp EEECSSTT
T ss_pred EEEeCCCC
Confidence 99986543
|
| >3jyo_A Quinate/shikimate dehydrogenase; enzyme-cofactor complex, amino-acid biosynthesis, aromatic A biosynthesis, NAD, oxidoreductase; HET: NAD; 1.00A {Corynebacterium glutamicum} PDB: 3jyp_A* 3jyq_A* 2nlo_A | Back alignment and structure |
|---|
Probab=95.90 E-value=0.02 Score=50.94 Aligned_cols=77 Identities=16% Similarity=0.168 Sum_probs=50.6
Q ss_pred CCcEEEEEcCCChhHHHHHHHHHhcccCCCCCCeEEEEEecccchhhhhhhHhhhhhhccCCccceEEe--CCHHHHhCC
Q 019990 4 NPLRVLVTGAAGQIGYALVPMIARGIMLGPDQPVILHMLDIEPAAEALNGVKMELIDAAFPLLKGVVAT--TDVVEACKD 81 (332)
Q Consensus 4 ~~~kI~VtGaaG~IGs~l~~~L~~~~~~~~~~~~~i~l~D~~~~~~~~~~~~~dl~~~~~~~~~~v~~~--~~~~~a~~~ 81 (332)
+.++++|+| +|.+|++++..|...|. .+|.+++++. ++++....++... .+ ...+... .++.+++++
T Consensus 126 ~~k~vlVlG-aGG~g~aia~~L~~~G~------~~v~i~~R~~--~~a~~la~~~~~~-~~-~~~i~~~~~~~l~~~l~~ 194 (283)
T 3jyo_A 126 KLDSVVQVG-AGGVGNAVAYALVTHGV------QKLQVADLDT--SRAQALADVINNA-VG-REAVVGVDARGIEDVIAA 194 (283)
T ss_dssp CCSEEEEEC-CSHHHHHHHHHHHHTTC------SEEEEECSSH--HHHHHHHHHHHHH-HT-SCCEEEECSTTHHHHHHH
T ss_pred CCCEEEEEC-CcHHHHHHHHHHHHCCC------CEEEEEECCH--HHHHHHHHHHHhh-cC-CceEEEcCHHHHHHHHhc
Confidence 457899999 59999999999998774 2799999864 3343333333321 01 0122222 367777889
Q ss_pred CcEEEEecCC
Q 019990 82 VNIAVMVGGF 91 (332)
Q Consensus 82 aDiVi~~ag~ 91 (332)
+|+||.+-..
T Consensus 195 ~DiVInaTp~ 204 (283)
T 3jyo_A 195 ADGVVNATPM 204 (283)
T ss_dssp SSEEEECSST
T ss_pred CCEEEECCCC
Confidence 9999997543
|
| >3euw_A MYO-inositol dehydrogenase; protein structure initiative II (PSI II), NYSGXRC, MYO-inosi dehydrogenase, oxidoreductase, tetramer; 2.30A {Corynebacterium glutamicum} | Back alignment and structure |
|---|
Probab=95.84 E-value=0.025 Score=51.50 Aligned_cols=70 Identities=26% Similarity=0.221 Sum_probs=45.2
Q ss_pred CCCCCcEEEEEcCCChhHHHHHHHHHhcccCCCCCCeEEE-EEecccchhhhhhhHhhhhhhccCCccceEEeCCHHHHh
Q 019990 1 MAKNPLRVLVTGAAGQIGYALVPMIARGIMLGPDQPVILH-MLDIEPAAEALNGVKMELIDAAFPLLKGVVATTDVVEAC 79 (332)
Q Consensus 1 m~~~~~kI~VtGaaG~IGs~l~~~L~~~~~~~~~~~~~i~-l~D~~~~~~~~~~~~~dl~~~~~~~~~~v~~~~~~~~a~ 79 (332)
|+ +++||+|+| +|.+|..++..|....- .+++ ++|++. +++...... + +.....++.+.+
T Consensus 1 M~-~~~rvgiiG-~G~~g~~~~~~l~~~~~------~~l~av~d~~~--~~~~~~a~~-------~--g~~~~~~~~~~l 61 (344)
T 3euw_A 1 MS-LTLRIALFG-AGRIGHVHAANIAANPD------LELVVIADPFI--EGAQRLAEA-------N--GAEAVASPDEVF 61 (344)
T ss_dssp ---CCEEEEEEC-CSHHHHHHHHHHHHCTT------EEEEEEECSSH--HHHHHHHHT-------T--TCEEESSHHHHT
T ss_pred CC-CceEEEEEC-CcHHHHHHHHHHHhCCC------cEEEEEECCCH--HHHHHHHHH-------c--CCceeCCHHHHh
Confidence 53 568999999 69999999998877431 2554 788753 222221111 1 134457787878
Q ss_pred C--CCcEEEEec
Q 019990 80 K--DVNIAVMVG 89 (332)
Q Consensus 80 ~--~aDiVi~~a 89 (332)
+ ++|+|+++.
T Consensus 62 ~~~~~D~V~i~t 73 (344)
T 3euw_A 62 ARDDIDGIVIGS 73 (344)
T ss_dssp TCSCCCEEEECS
T ss_pred cCCCCCEEEEeC
Confidence 7 789999864
|
| >1t4b_A Aspartate-semialdehyde dehydrogenase; asadh, HOSR, lysine biosynthesis, NADP+ oxidoreductase (phosphorylating), domain movement; 1.60A {Escherichia coli} SCOP: c.2.1.3 d.81.1.1 PDB: 1t4d_A 1brm_A 1gl3_A* 1nwc_A 1ta4_A 1tb4_A 1ps8_A 1pr3_A 1oza_A 1pqu_A* 1pqp_A 1nwh_A* 1nx6_A* 1pu2_A* 1q2x_A* | Back alignment and structure |
|---|
Probab=95.77 E-value=0.042 Score=50.70 Aligned_cols=73 Identities=18% Similarity=0.118 Sum_probs=40.6
Q ss_pred CcEEEEEcCCChhHHHHHHH-HHhcccCCCCCCeEEEEEecccchhhhhhhHhhhhhhccCCccceEEeCCHHHHhCCCc
Q 019990 5 PLRVLVTGAAGQIGYALVPM-IARGIMLGPDQPVILHMLDIEPAAEALNGVKMELIDAAFPLLKGVVATTDVVEACKDVN 83 (332)
Q Consensus 5 ~~kI~VtGaaG~IGs~l~~~-L~~~~~~~~~~~~~i~l~D~~~~~~~~~~~~~dl~~~~~~~~~~v~~~~~~~~a~~~aD 83 (332)
|+||+|+||+|.+|+.++.. |.+.++- ..+++++..+. .|.. +.+... ....+....+. +.++++|
T Consensus 1 m~kVaIvGAtG~vG~~llr~ll~~~~~~----~v~i~~~~~~s-----~G~~--v~~~~g-~~i~~~~~~~~-~~~~~~D 67 (367)
T 1t4b_A 1 MQNVGFIGWRGMVGSVLMQRMVEERDFD----AIRPVFFSTSQ-----LGQA--APSFGG-TTGTLQDAFDL-EALKALD 67 (367)
T ss_dssp CCEEEEESTTSHHHHHHHHHHHHTTGGG----GSEEEEEESSS-----TTSB--CCGGGT-CCCBCEETTCH-HHHHTCS
T ss_pred CcEEEEECCCCHHHHHHHHHHHhcCCCC----eEEEEEEEeCC-----CCCC--ccccCC-CceEEEecCCh-HHhcCCC
Confidence 46999999999999999994 4444320 13677775431 2211 111000 00112222233 3367999
Q ss_pred EEEEecC
Q 019990 84 IAVMVGG 90 (332)
Q Consensus 84 iVi~~ag 90 (332)
+||.+.|
T Consensus 68 vVf~a~g 74 (367)
T 1t4b_A 68 IIVTCQG 74 (367)
T ss_dssp EEEECSC
T ss_pred EEEECCC
Confidence 9998754
|
| >4dpk_A Malonyl-COA/succinyl-COA reductase; dinucleotide binding, dimerization domain, NADP, oxidoreductase; 2.05A {Sulfolobus tokodaii} PDB: 4dpm_A* | Back alignment and structure |
|---|
Probab=95.75 E-value=0.0058 Score=56.31 Aligned_cols=35 Identities=23% Similarity=0.336 Sum_probs=27.3
Q ss_pred CCcEEEEEcCCChhHHHHHHHHHhcccCCCCCCeEEEEEec
Q 019990 4 NPLRVLVTGAAGQIGYALVPMIARGIMLGPDQPVILHMLDI 44 (332)
Q Consensus 4 ~~~kI~VtGaaG~IGs~l~~~L~~~~~~~~~~~~~i~l~D~ 44 (332)
+++||+|+||+|++|..++..|..... .++..+..
T Consensus 6 ~~~kVaIvGATGyvG~eLlrlL~~hP~------~el~~l~S 40 (359)
T 4dpk_A 6 RTLKAAILGATGLVGIEYVRMLSNHPY------IKPAYLAG 40 (359)
T ss_dssp CCEEEEETTTTSTTHHHHHHHHTTCSS------EEEEEEEE
T ss_pred CCCeEEEECCCCHHHHHHHHHHHhCCC------ceEEEEEC
Confidence 457999999999999999997766443 37776643
|
| >4dpl_A Malonyl-COA/succinyl-COA reductase; dinucleotide binding, dimerization domain, NADP, oxidoreductase; HET: NAP; 1.90A {Sulfolobus tokodaii} PDB: 4dpk_A* 4dpm_A* | Back alignment and structure |
|---|
Probab=95.75 E-value=0.0058 Score=56.31 Aligned_cols=35 Identities=23% Similarity=0.336 Sum_probs=27.3
Q ss_pred CCcEEEEEcCCChhHHHHHHHHHhcccCCCCCCeEEEEEec
Q 019990 4 NPLRVLVTGAAGQIGYALVPMIARGIMLGPDQPVILHMLDI 44 (332)
Q Consensus 4 ~~~kI~VtGaaG~IGs~l~~~L~~~~~~~~~~~~~i~l~D~ 44 (332)
+++||+|+||+|++|..++..|..... .++..+..
T Consensus 6 ~~~kVaIvGATGyvG~eLlrlL~~hP~------~el~~l~S 40 (359)
T 4dpl_A 6 RTLKAAILGATGLVGIEYVRMLSNHPY------IKPAYLAG 40 (359)
T ss_dssp CCEEEEETTTTSTTHHHHHHHHTTCSS------EEEEEEEE
T ss_pred CCCeEEEECCCCHHHHHHHHHHHhCCC------ceEEEEEC
Confidence 457999999999999999997766443 37776643
|
| >3slk_A Polyketide synthase extender module 2; rossmann fold, NADPH, oxidoreductase; HET: NDP; 3.00A {Saccharopolyspora spinosa} | Back alignment and structure |
|---|
Probab=95.74 E-value=0.022 Score=58.02 Aligned_cols=118 Identities=14% Similarity=0.174 Sum_probs=71.8
Q ss_pred CcEEEEEcCCChhHHHHHHHHH-hcccCCCCCCeEEEEEecccch-hhhhhhHhhhhhhcc---CCccceEEeCCHHHHh
Q 019990 5 PLRVLVTGAAGQIGYALVPMIA-RGIMLGPDQPVILHMLDIEPAA-EALNGVKMELIDAAF---PLLKGVVATTDVVEAC 79 (332)
Q Consensus 5 ~~kI~VtGaaG~IGs~l~~~L~-~~~~~~~~~~~~i~l~D~~~~~-~~~~~~~~dl~~~~~---~~~~~v~~~~~~~~a~ 79 (332)
.+.++||||+|.+|..++..|+ +.|. ..+++.+++... +.+.....++..... ....|++...++.+++
T Consensus 530 ~~~~lItGg~~GlG~aiA~~la~~~Ga------~~vvl~~R~~~~~~~~~~~~~~l~~~G~~v~~~~~Dvsd~~~v~~~~ 603 (795)
T 3slk_A 530 AGTVLVTGGTGALGAEVARHLVIERGV------RNLVLVSRRGPAASGAAELVAQLTAYGAEVSLQACDVADRETLAKVL 603 (795)
T ss_dssp TSEEEEETTTSHHHHHHHHHHHHTSSC------CEEEEEESSGGGSTTHHHHHHHHHHTTCEEEEEECCTTCHHHHHHHH
T ss_pred ccceeeccCCCCcHHHHHHHHHHHcCC------cEEEEeccCccchHHHHHHHHHHHhcCCcEEEEEeecCCHHHHHHHH
Confidence 4678999999999999999998 6764 158888886321 122333334432211 1123554444444444
Q ss_pred C------CCcEEEEecCCCCCC---CCChh---HHHhhhHHHHHHHHHHHHhhcCCCcEEEEEeC
Q 019990 80 K------DVNIAVMVGGFPRKE---GMERK---DVMSKNVSIYKAQASALEKHAAPNCKVLVVAN 132 (332)
Q Consensus 80 ~------~aDiVi~~ag~~~~~---~~~~~---~~~~~N~~~~~~i~~~i~~~~~~~~~viv~sn 132 (332)
+ ..|+|||.||+.... .++.+ ..+..|+.+..++.+.+. +...||++|+
T Consensus 604 ~~~~~~~~id~lVnnAGv~~~~~~~~~t~e~~~~~~~~nv~G~~~l~~~~~----~~l~iV~~SS 664 (795)
T 3slk_A 604 ASIPDEHPLTAVVHAAGVLDDGVSESLTVERLDQVLRPKVDGARNLLELID----PDVALVLFSS 664 (795)
T ss_dssp HTSCTTSCEEEEEECCCCCCCCCGGGCCHHHHHHHHCCCCCHHHHHHHHSC----TTSEEEEEEE
T ss_pred HHHHHhCCCEEEEECCCcCCCCchhhCCHHHHHHHHHHHHHHHHHHHHHHh----hCCEEEEEcc
Confidence 3 358999999985432 12322 346678888777766652 3446677775
|
| >1jw9_B Molybdopterin biosynthesis MOEB protein; MOEB: modified rossmann fold, (2) Cys-X-X-Cys zinc-binding M MOAD: ubiquitin-like fold; 1.70A {Escherichia coli} SCOP: c.111.1.1 PDB: 1jwa_B* 1jwb_B* | Back alignment and structure |
|---|
Probab=95.71 E-value=0.02 Score=49.89 Aligned_cols=35 Identities=34% Similarity=0.548 Sum_probs=30.0
Q ss_pred CcEEEEEcCCChhHHHHHHHHHhcccCCCCCCeEEEEEeccc
Q 019990 5 PLRVLVTGAAGQIGYALVPMIARGIMLGPDQPVILHMLDIEP 46 (332)
Q Consensus 5 ~~kI~VtGaaG~IGs~l~~~L~~~~~~~~~~~~~i~l~D~~~ 46 (332)
..||+|+| +|.+|+.++..|...|. + ++.++|.+.
T Consensus 31 ~~~VlVvG-~Gg~G~~va~~La~~Gv-~-----~i~lvD~d~ 65 (249)
T 1jw9_B 31 DSRVLIVG-LGGLGCAASQYLASAGV-G-----NLTLLDFDT 65 (249)
T ss_dssp HCEEEEEC-CSHHHHHHHHHHHHHTC-S-----EEEEECCCB
T ss_pred CCeEEEEe-eCHHHHHHHHHHHHcCC-C-----eEEEEcCCC
Confidence 36899999 69999999999998875 2 899999764
|
| >1x7d_A Ornithine cyclodeaminase; binds NAD+, binds L-ornithine, binds L-proline, 2 bundle, beta barrel, rossmann fold, lyase; HET: NAD ORN MES; 1.60A {Pseudomonas putida} SCOP: c.2.1.13 PDB: 1u7h_A* | Back alignment and structure |
|---|
Probab=95.62 E-value=0.047 Score=50.02 Aligned_cols=75 Identities=19% Similarity=0.139 Sum_probs=49.8
Q ss_pred CCcEEEEEcCCChhHHHHHHHHHh-cccCCCCCCeEEEEEecccchhhhhhhHhhhhhhccCCccceEEeCCHHHHhCCC
Q 019990 4 NPLRVLVTGAAGQIGYALVPMIAR-GIMLGPDQPVILHMLDIEPAAEALNGVKMELIDAAFPLLKGVVATTDVVEACKDV 82 (332)
Q Consensus 4 ~~~kI~VtGaaG~IGs~l~~~L~~-~~~~~~~~~~~i~l~D~~~~~~~~~~~~~dl~~~~~~~~~~v~~~~~~~~a~~~a 82 (332)
+.++|+|+| +|.+|...+..|+. .+. .+|.++|++. ++.+....++... ....+....+..++++++
T Consensus 128 ~~~~v~iIG-aG~~a~~~a~al~~~~~~------~~V~V~~r~~--~~a~~la~~~~~~---~g~~~~~~~~~~eav~~a 195 (350)
T 1x7d_A 128 NARKMALIG-NGAQSEFQALAFHKHLGI------EEIVAYDTDP--LATAKLIANLKEY---SGLTIRRASSVAEAVKGV 195 (350)
T ss_dssp TCCEEEEEC-CSTTHHHHHHHHHHHSCC------CEEEEECSSH--HHHHHHHHHHTTC---TTCEEEECSSHHHHHTTC
T ss_pred cCCeEEEEC-CcHHHHHHHHHHHHhCCC------cEEEEEcCCH--HHHHHHHHHHHhc---cCceEEEeCCHHHHHhcC
Confidence 467899999 79999999888764 332 2899999864 3444333333210 011244456788889999
Q ss_pred cEEEEecC
Q 019990 83 NIAVMVGG 90 (332)
Q Consensus 83 DiVi~~ag 90 (332)
|+||.+-.
T Consensus 196 DiVi~aTp 203 (350)
T 1x7d_A 196 DIITTVTA 203 (350)
T ss_dssp SEEEECCC
T ss_pred CEEEEecc
Confidence 99998743
|
| >3evn_A Oxidoreductase, GFO/IDH/MOCA family; structural genomics; 2.00A {Streptococcus agalactiae serogroup V} | Back alignment and structure |
|---|
Probab=95.62 E-value=0.013 Score=53.04 Aligned_cols=70 Identities=7% Similarity=0.041 Sum_probs=41.8
Q ss_pred CCCCCcEEEEEcCCChhHHHHHHHHHhcccCCCCCCeEE-EEEecccchhhhhhhHhhhhhhccCCccce-EEeCCHHHH
Q 019990 1 MAKNPLRVLVTGAAGQIGYALVPMIARGIMLGPDQPVIL-HMLDIEPAAEALNGVKMELIDAAFPLLKGV-VATTDVVEA 78 (332)
Q Consensus 1 m~~~~~kI~VtGaaG~IGs~l~~~L~~~~~~~~~~~~~i-~l~D~~~~~~~~~~~~~dl~~~~~~~~~~v-~~~~~~~~a 78 (332)
|+++++||+|+| +|.+|..++..|...+. .++ .++|++. +++...... + ++ ....+..+.
T Consensus 1 M~m~~~rigiiG-~G~ig~~~~~~l~~~~~------~~~~av~d~~~--~~~~~~a~~-------~--~~~~~~~~~~~l 62 (329)
T 3evn_A 1 MSLSKVRYGVVS-TAKVAPRFIEGVRLAGN------GEVVAVSSRTL--ESAQAFANK-------Y--HLPKAYDKLEDM 62 (329)
T ss_dssp ----CEEEEEEB-CCTTHHHHHHHHHHHCS------EEEEEEECSCS--STTCC---C-------C--CCSCEESCHHHH
T ss_pred CCCCceEEEEEe-chHHHHHHHHHHHhCCC------cEEEEEEcCCH--HHHHHHHHH-------c--CCCcccCCHHHH
Confidence 777889999999 69999999988876432 244 4678753 222211111 1 11 134677777
Q ss_pred hC--CCcEEEEe
Q 019990 79 CK--DVNIAVMV 88 (332)
Q Consensus 79 ~~--~aDiVi~~ 88 (332)
+. ++|+|+++
T Consensus 63 l~~~~~D~V~i~ 74 (329)
T 3evn_A 63 LADESIDVIYVA 74 (329)
T ss_dssp HTCTTCCEEEEC
T ss_pred hcCCCCCEEEEC
Confidence 76 78999986
|
| >2r00_A Aspartate-semialdehyde dehydrogenase; conformational change, half-OF-sites-reactivity, protein evolution, sequence homology; HET: HTI; 2.03A {Vibrio cholerae} PDB: 2qz9_A* 2r00_C* | Back alignment and structure |
|---|
Probab=95.60 E-value=0.045 Score=49.86 Aligned_cols=36 Identities=19% Similarity=0.349 Sum_probs=27.2
Q ss_pred CCcEEEEEcCCChhHHHHHHHHHhcccCCCCCCeEEEEEe
Q 019990 4 NPLRVLVTGAAGQIGYALVPMIARGIMLGPDQPVILHMLD 43 (332)
Q Consensus 4 ~~~kI~VtGaaG~IGs~l~~~L~~~~~~~~~~~~~i~l~D 43 (332)
+|+||+|+||+|.||+.++..|.+.++ . ..+++.+.
T Consensus 2 ~~~kV~I~GAtG~iG~~llr~L~~~~~-p---~~elv~i~ 37 (336)
T 2r00_A 2 QQFNVAIFGATGAVGETMLEVLQEREF-P---VDELFLLA 37 (336)
T ss_dssp CCEEEEEETTTSHHHHHHHHHHHHTTC-C---EEEEEEEE
T ss_pred CccEEEEECCCCHHHHHHHHHHhcCCC-C---CEEEEEEE
Confidence 468999999999999999998887531 0 13666664
|
| >2egg_A AROE, shikimate 5-dehydrogenase; dimer, X-RAY diffraction, structural genomics, NPPSFA; 2.25A {Geobacillus kaustophilus} | Back alignment and structure |
|---|
Probab=95.60 E-value=0.024 Score=50.77 Aligned_cols=77 Identities=13% Similarity=0.068 Sum_probs=49.8
Q ss_pred CCcEEEEEcCCChhHHHHHHHHHhcccCCCCCCeEEEEEecccchhhhhhhHhhhhhhccCCccceEEeCCHHHHhCCCc
Q 019990 4 NPLRVLVTGAAGQIGYALVPMIARGIMLGPDQPVILHMLDIEPAAEALNGVKMELIDAAFPLLKGVVATTDVVEACKDVN 83 (332)
Q Consensus 4 ~~~kI~VtGaaG~IGs~l~~~L~~~~~~~~~~~~~i~l~D~~~~~~~~~~~~~dl~~~~~~~~~~v~~~~~~~~a~~~aD 83 (332)
..++|+|+| +|.+|..++..|+..|. .+|.+++++. ++++....++.. .. ..+....++.+++.++|
T Consensus 140 ~~~~vlVlG-aGg~g~aia~~L~~~G~------~~V~v~nR~~--~ka~~la~~~~~---~~-~~~~~~~~~~~~~~~aD 206 (297)
T 2egg_A 140 DGKRILVIG-AGGGARGIYFSLLSTAA------ERIDMANRTV--EKAERLVREGDE---RR-SAYFSLAEAETRLAEYD 206 (297)
T ss_dssp TTCEEEEEC-CSHHHHHHHHHHHTTTC------SEEEEECSSH--HHHHHHHHHSCS---SS-CCEECHHHHHHTGGGCS
T ss_pred CCCEEEEEC-cHHHHHHHHHHHHHCCC------CEEEEEeCCH--HHHHHHHHHhhh---cc-CceeeHHHHHhhhccCC
Confidence 457899999 59999999999998774 2799999853 233322222211 00 01221234556788999
Q ss_pred EEEEecCCCC
Q 019990 84 IAVMVGGFPR 93 (332)
Q Consensus 84 iVi~~ag~~~ 93 (332)
+||.+.+...
T Consensus 207 ivIn~t~~~~ 216 (297)
T 2egg_A 207 IIINTTSVGM 216 (297)
T ss_dssp EEEECSCTTC
T ss_pred EEEECCCCCC
Confidence 9999886643
|
| >3rc1_A Sugar 3-ketoreductase; sugar biosynthesis, TDP binding, NADP binding binding protein; HET: TLO NAP; 1.71A {Actinomadura kijaniata} PDB: 3rbv_A* 3rc2_A* 3rcb_A* 3rc7_A* 3rc9_A* | Back alignment and structure |
|---|
Probab=95.58 E-value=0.03 Score=51.18 Aligned_cols=69 Identities=16% Similarity=0.222 Sum_probs=42.4
Q ss_pred CCCCcEEEEEcCCChhHH-HHHHHHHhcccCCCCCCeEE-EEEecccchhhhhhhHhhhhhhccCCccceEEeCCHHHHh
Q 019990 2 AKNPLRVLVTGAAGQIGY-ALVPMIARGIMLGPDQPVIL-HMLDIEPAAEALNGVKMELIDAAFPLLKGVVATTDVVEAC 79 (332)
Q Consensus 2 ~~~~~kI~VtGaaG~IGs-~l~~~L~~~~~~~~~~~~~i-~l~D~~~~~~~~~~~~~dl~~~~~~~~~~v~~~~~~~~a~ 79 (332)
+++++||+|+| +|.+|. +++..|....- .++ .++|.+. +++......+ ++....++.+.+
T Consensus 24 ~m~~~rigiIG-~G~~g~~~~~~~l~~~~~------~~l~av~d~~~--~~~~~~a~~~---------g~~~~~~~~~ll 85 (350)
T 3rc1_A 24 NANPIRVGVIG-CADIAWRRALPALEAEPL------TEVTAIASRRW--DRAKRFTERF---------GGEPVEGYPALL 85 (350)
T ss_dssp --CCEEEEEES-CCHHHHHTHHHHHHHCTT------EEEEEEEESSH--HHHHHHHHHH---------CSEEEESHHHHH
T ss_pred CCCceEEEEEc-CcHHHHHHHHHHHHhCCC------eEEEEEEcCCH--HHHHHHHHHc---------CCCCcCCHHHHh
Confidence 45578999999 799998 78888876421 255 4778753 2332221111 122335677777
Q ss_pred C--CCcEEEEe
Q 019990 80 K--DVNIAVMV 88 (332)
Q Consensus 80 ~--~aDiVi~~ 88 (332)
+ ++|+|+++
T Consensus 86 ~~~~~D~V~i~ 96 (350)
T 3rc1_A 86 ERDDVDAVYVP 96 (350)
T ss_dssp TCTTCSEEEEC
T ss_pred cCCCCCEEEEC
Confidence 5 58999986
|
| >3gvx_A Glycerate dehydrogenase related protein; NYSGXRC, PSI-II, 11143J, structural genomics, protein structure initiative; 2.20A {Thermoplasma acidophilum} | Back alignment and structure |
|---|
Probab=95.52 E-value=0.024 Score=50.52 Aligned_cols=61 Identities=11% Similarity=0.044 Sum_probs=46.5
Q ss_pred CcEEEEEcCCChhHHHHHHHHHhcccCCCCCCeEEEEEecccchhhhhhhHhhhhhhccCCccceEEeCCHHHHhCCCcE
Q 019990 5 PLRVLVTGAAGQIGYALVPMIARGIMLGPDQPVILHMLDIEPAAEALNGVKMELIDAAFPLLKGVVATTDVVEACKDVNI 84 (332)
Q Consensus 5 ~~kI~VtGaaG~IGs~l~~~L~~~~~~~~~~~~~i~l~D~~~~~~~~~~~~~dl~~~~~~~~~~v~~~~~~~~a~~~aDi 84 (332)
.++|+|+| .|.||+.++..|...|. +|..+|+.... ... +....++.+.+++||+
T Consensus 122 g~tvGIIG-lG~IG~~vA~~l~~~G~-------~V~~~dr~~~~--~~~---------------~~~~~~l~ell~~aDi 176 (290)
T 3gvx_A 122 GKALGILG-YGGIGRRVAHLAKAFGM-------RVIAYTRSSVD--QNV---------------DVISESPADLFRQSDF 176 (290)
T ss_dssp TCEEEEEC-CSHHHHHHHHHHHHHTC-------EEEEECSSCCC--TTC---------------SEECSSHHHHHHHCSE
T ss_pred cchheeec-cCchhHHHHHHHHhhCc-------EEEEEeccccc--ccc---------------ccccCChHHHhhccCe
Confidence 57999999 89999999999998775 89999985421 110 1223578888999999
Q ss_pred EEEecC
Q 019990 85 AVMVGG 90 (332)
Q Consensus 85 Vi~~ag 90 (332)
|+.+.-
T Consensus 177 V~l~~P 182 (290)
T 3gvx_A 177 VLIAIP 182 (290)
T ss_dssp EEECCC
T ss_pred EEEEee
Confidence 998753
|
| >1u7z_A Coenzyme A biosynthesis bifunctional protein coabc; ligase; HET: PMT; 2.30A {Escherichia coli} SCOP: c.72.3.1 PDB: 1u7w_A* 1u7u_A* 1u80_A* | Back alignment and structure |
|---|
Probab=95.51 E-value=0.047 Score=46.70 Aligned_cols=72 Identities=15% Similarity=0.230 Sum_probs=45.7
Q ss_pred CCcEEEEEcC----------------CChhHHHHHHHHHhcccCCCCCCeEEEEEecccchhhhhhhHhhhhhhccCCcc
Q 019990 4 NPLRVLVTGA----------------AGQIGYALVPMIARGIMLGPDQPVILHMLDIEPAAEALNGVKMELIDAAFPLLK 67 (332)
Q Consensus 4 ~~~kI~VtGa----------------aG~IGs~l~~~L~~~~~~~~~~~~~i~l~D~~~~~~~~~~~~~dl~~~~~~~~~ 67 (332)
..++|+|||| +|.+|.+++..|.+.|. +|.+++.+.. +. .... . ...
T Consensus 7 ~gk~vlVTgG~T~E~iDpVR~itN~SSg~iG~aiA~~~~~~Ga-------~V~l~~~~~~---l~-----~~~g-~-~~~ 69 (226)
T 1u7z_A 7 KHLNIMITAGPTREPLDPVRYISDHSSGKMGFAIAAAAARRGA-------NVTLVSGPVS---LP-----TPPF-V-KRV 69 (226)
T ss_dssp TTCEEEEEESBCEEESSSSEEEEECCCSHHHHHHHHHHHHTTC-------EEEEEECSCC---CC-----CCTT-E-EEE
T ss_pred CCCEEEEECCCCCcccCceeeccCCCccHHHHHHHHHHHHCCC-------EEEEEECCcc---cc-----cCCC-C-eEE
Confidence 3578999999 69999999999999886 8888876421 11 0000 0 001
Q ss_pred ceEEeCCHH----HHhCCCcEEEEecCCC
Q 019990 68 GVVATTDVV----EACKDVNIAVMVGGFP 92 (332)
Q Consensus 68 ~v~~~~~~~----~a~~~aDiVi~~ag~~ 92 (332)
++....++. +.+.++|++|+.||+.
T Consensus 70 dv~~~~~~~~~v~~~~~~~Dili~~Aav~ 98 (226)
T 1u7z_A 70 DVMTALEMEAAVNASVQQQNIFIGCAAVA 98 (226)
T ss_dssp ECCSHHHHHHHHHHHGGGCSEEEECCBCC
T ss_pred ccCcHHHHHHHHHHhcCCCCEEEECCccc
Confidence 111111222 2345799999999975
|
| >3p2o_A Bifunctional protein fold; structural genomics, center for structural genomics of infec diseases, csgid, alpha-beta-alpha sandwich; HET: NAD; 2.23A {Campylobacter jejuni subsp} | Back alignment and structure |
|---|
Probab=95.50 E-value=0.051 Score=48.05 Aligned_cols=56 Identities=14% Similarity=0.294 Sum_probs=44.2
Q ss_pred CCcEEEEEcCCChhHHHHHHHHHhcccCCCCCCeEEEEEecccchhhhhhhHhhhhhhccCCccceEEeCCHHHHhCCCc
Q 019990 4 NPLRVLVTGAAGQIGYALVPMIARGIMLGPDQPVILHMLDIEPAAEALNGVKMELIDAAFPLLKGVVATTDVVEACKDVN 83 (332)
Q Consensus 4 ~~~kI~VtGaaG~IGs~l~~~L~~~~~~~~~~~~~i~l~D~~~~~~~~~~~~~dl~~~~~~~~~~v~~~~~~~~a~~~aD 83 (332)
..++++|+|+++.+|..++..|+..+- ++.+++.. +.++.+.++.||
T Consensus 159 ~Gk~vvVvGrs~iVG~p~A~lL~~~gA-------tVtv~h~~--------------------------t~~L~~~~~~AD 205 (285)
T 3p2o_A 159 EGKDAVIIGASNIVGRPMATMLLNAGA-------TVSVCHIK--------------------------TKDLSLYTRQAD 205 (285)
T ss_dssp TTCEEEEECCCTTTHHHHHHHHHHTTC-------EEEEECTT--------------------------CSCHHHHHTTCS
T ss_pred CCCEEEEECCCchHHHHHHHHHHHCCC-------eEEEEeCC--------------------------chhHHHHhhcCC
Confidence 457999999877799999999998774 77777642 135667789999
Q ss_pred EEEEecCCC
Q 019990 84 IAVMVGGFP 92 (332)
Q Consensus 84 iVi~~ag~~ 92 (332)
+||.+.|.+
T Consensus 206 IVI~Avg~p 214 (285)
T 3p2o_A 206 LIIVAAGCV 214 (285)
T ss_dssp EEEECSSCT
T ss_pred EEEECCCCC
Confidence 999988754
|
| >4dgs_A Dehydrogenase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, oxidoreductase; 2.50A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=95.48 E-value=0.038 Score=50.42 Aligned_cols=60 Identities=22% Similarity=0.205 Sum_probs=45.7
Q ss_pred CcEEEEEcCCChhHHHHHHHHHhcccCCCCCCeEEEEEecccchhhhhhhHhhhhhhccCCccceEEeCCHHHHhCCCcE
Q 019990 5 PLRVLVTGAAGQIGYALVPMIARGIMLGPDQPVILHMLDIEPAAEALNGVKMELIDAAFPLLKGVVATTDVVEACKDVNI 84 (332)
Q Consensus 5 ~~kI~VtGaaG~IGs~l~~~L~~~~~~~~~~~~~i~l~D~~~~~~~~~~~~~dl~~~~~~~~~~v~~~~~~~~a~~~aDi 84 (332)
.++|+|+| .|.||+.++..|...|. +|..+|+.... . . ......++.+.+++||+
T Consensus 171 gktiGIIG-lG~IG~~vA~~l~~~G~-------~V~~~dr~~~~--~------~---------~~~~~~sl~ell~~aDv 225 (340)
T 4dgs_A 171 GKRIGVLG-LGQIGRALASRAEAFGM-------SVRYWNRSTLS--G------V---------DWIAHQSPVDLARDSDV 225 (340)
T ss_dssp TCEEEEEC-CSHHHHHHHHHHHTTTC-------EEEEECSSCCT--T------S---------CCEECSSHHHHHHTCSE
T ss_pred CCEEEEEC-CCHHHHHHHHHHHHCCC-------EEEEEcCCccc--c------c---------CceecCCHHHHHhcCCE
Confidence 57999999 79999999999987775 89999975321 0 0 11223578888999999
Q ss_pred EEEec
Q 019990 85 AVMVG 89 (332)
Q Consensus 85 Vi~~a 89 (332)
|+.+.
T Consensus 226 Vil~v 230 (340)
T 4dgs_A 226 LAVCV 230 (340)
T ss_dssp EEECC
T ss_pred EEEeC
Confidence 99864
|
| >1tlt_A Putative oxidoreductase (virulence factor MVIM HO; structural genomics, NYSGXRC, PSI, protein structure initiative; 2.70A {Escherichia coli} SCOP: c.2.1.3 d.81.1.5 | Back alignment and structure |
|---|
Probab=95.41 E-value=0.033 Score=50.05 Aligned_cols=71 Identities=15% Similarity=0.172 Sum_probs=39.7
Q ss_pred CCCCCcEEEEEcCCChhHHH-HHHHHHhcccCCCCCCeEEE-EEecccchhhhhhhHhhhhhhccCCccceEEeCCHHHH
Q 019990 1 MAKNPLRVLVTGAAGQIGYA-LVPMIARGIMLGPDQPVILH-MLDIEPAAEALNGVKMELIDAAFPLLKGVVATTDVVEA 78 (332)
Q Consensus 1 m~~~~~kI~VtGaaG~IGs~-l~~~L~~~~~~~~~~~~~i~-l~D~~~~~~~~~~~~~dl~~~~~~~~~~v~~~~~~~~a 78 (332)
|+++++||+|+| +|.+|.. ++..|....- .+++ ++|.+. ++.+.....+ ..+ ..++..+.
T Consensus 1 m~m~~~~vgiiG-~G~~g~~~~~~~l~~~~~------~~lvav~d~~~--~~~~~~~~~~---g~~------~~~~~~~l 62 (319)
T 1tlt_A 1 MSLKKLRIGVVG-LGGIAQKAWLPVLAAASD------WTLQGAWSPTR--AKALPICESW---RIP------YADSLSSL 62 (319)
T ss_dssp ----CEEEEEEC-CSTHHHHTHHHHHHSCSS------EEEEEEECSSC--TTHHHHHHHH---TCC------BCSSHHHH
T ss_pred CCCCcceEEEEC-CCHHHHHHHHHHHHhCCC------eEEEEEECCCH--HHHHHHHHHc---CCC------ccCcHHHh
Confidence 777889999999 6999985 7887765321 2554 888764 2222211111 111 23344333
Q ss_pred hCCCcEEEEec
Q 019990 79 CKDVNIAVMVG 89 (332)
Q Consensus 79 ~~~aDiVi~~a 89 (332)
..++|+|+++.
T Consensus 63 ~~~~D~V~i~t 73 (319)
T 1tlt_A 63 AASCDAVFVHS 73 (319)
T ss_dssp HTTCSEEEECS
T ss_pred hcCCCEEEEeC
Confidence 36899999863
|
| >3qy9_A DHPR, dihydrodipicolinate reductase; rossmann fold, NADH, NADPH, oxidoreductase; 1.80A {Staphylococcus aureus} | Back alignment and structure |
|---|
Probab=95.39 E-value=0.025 Score=49.06 Aligned_cols=34 Identities=12% Similarity=0.321 Sum_probs=26.6
Q ss_pred CcEEEEEcCCChhHHHHHHHHHhcccCCCCCCeEE-EEEeccc
Q 019990 5 PLRVLVTGAAGQIGYALVPMIARGIMLGPDQPVIL-HMLDIEP 46 (332)
Q Consensus 5 ~~kI~VtGaaG~IGs~l~~~L~~~~~~~~~~~~~i-~l~D~~~ 46 (332)
|+||+|+|+ |.+|+.++..+.+.+. ++ ..+|.+.
T Consensus 3 MmkI~ViGa-GrMG~~i~~~l~~~~~-------eLva~~d~~~ 37 (243)
T 3qy9_A 3 SMKILLIGY-GAMNQRVARLAEEKGH-------EIVGVIENTP 37 (243)
T ss_dssp CCEEEEECC-SHHHHHHHHHHHHTTC-------EEEEEECSSC
T ss_pred ceEEEEECc-CHHHHHHHHHHHhCCC-------EEEEEEecCc
Confidence 789999996 9999999999887542 44 4578653
|
| >2dbq_A Glyoxylate reductase; D-3-phosphoglycerate dehydrogenase, ST genomics, NPPSFA; HET: NAP; 1.70A {Pyrococcus horikoshii} PDB: 2dbr_A* 2dbz_A* | Back alignment and structure |
|---|
Probab=95.36 E-value=0.038 Score=50.27 Aligned_cols=65 Identities=12% Similarity=0.107 Sum_probs=46.5
Q ss_pred CCcEEEEEcCCChhHHHHHHHHHhcccCCCCCCeEEEEEecccchhhhhhhHhhhhhhccCCccceEEeCCHHHHhCCCc
Q 019990 4 NPLRVLVTGAAGQIGYALVPMIARGIMLGPDQPVILHMLDIEPAAEALNGVKMELIDAAFPLLKGVVATTDVVEACKDVN 83 (332)
Q Consensus 4 ~~~kI~VtGaaG~IGs~l~~~L~~~~~~~~~~~~~i~l~D~~~~~~~~~~~~~dl~~~~~~~~~~v~~~~~~~~a~~~aD 83 (332)
..++|+|+| .|.||+.++..|...|. +|..+|++... . ... .. .+. ..++.+.++++|
T Consensus 149 ~g~~vgIIG-~G~iG~~iA~~l~~~G~-------~V~~~d~~~~~---~-~~~---~~------g~~-~~~l~~~l~~aD 206 (334)
T 2dbq_A 149 YGKTIGIIG-LGRIGQAIAKRAKGFNM-------RILYYSRTRKE---E-VER---EL------NAE-FKPLEDLLRESD 206 (334)
T ss_dssp TTCEEEEEC-CSHHHHHHHHHHHHTTC-------EEEEECSSCCH---H-HHH---HH------CCE-ECCHHHHHHHCS
T ss_pred CCCEEEEEc-cCHHHHHHHHHHHhCCC-------EEEEECCCcch---h-hHh---hc------Ccc-cCCHHHHHhhCC
Confidence 357999999 79999999999988775 89999986421 1 111 11 112 236777889999
Q ss_pred EEEEecC
Q 019990 84 IAVMVGG 90 (332)
Q Consensus 84 iVi~~ag 90 (332)
+|+.+..
T Consensus 207 vVil~vp 213 (334)
T 2dbq_A 207 FVVLAVP 213 (334)
T ss_dssp EEEECCC
T ss_pred EEEECCC
Confidence 9998754
|
| >3m2t_A Probable dehydrogenase; PSI, SGXNY, structural genomics, protein structure initiative; HET: NAD; 2.30A {Chromobacterium violaceum} | Back alignment and structure |
|---|
Probab=95.34 E-value=0.019 Score=52.77 Aligned_cols=71 Identities=17% Similarity=0.179 Sum_probs=43.3
Q ss_pred CCCCCcEEEEEcCCChhHH-HHHHHHHhcccCCCCCCeEEE-EEecccchhhhhhhHhhhhhhccCCccceEEeCCHHHH
Q 019990 1 MAKNPLRVLVTGAAGQIGY-ALVPMIARGIMLGPDQPVILH-MLDIEPAAEALNGVKMELIDAAFPLLKGVVATTDVVEA 78 (332)
Q Consensus 1 m~~~~~kI~VtGaaG~IGs-~l~~~L~~~~~~~~~~~~~i~-l~D~~~~~~~~~~~~~dl~~~~~~~~~~v~~~~~~~~a 78 (332)
|+++++||+|+| +|.+|. +++..|....- .+++ ++|.+. ++++..... ........++.+.
T Consensus 1 M~M~~~rigiIG-~G~~g~~~~~~~l~~~~~------~~l~av~d~~~--~~~~~~a~~--------~~~~~~~~~~~~l 63 (359)
T 3m2t_A 1 MSLSLIKVGLVG-IGAQMQENLLPSLLQMQD------IRIVAACDSDL--ERARRVHRF--------ISDIPVLDNVPAM 63 (359)
T ss_dssp --CCCEEEEEEC-CSHHHHHTHHHHHHTCTT------EEEEEEECSSH--HHHGGGGGT--------SCSCCEESSHHHH
T ss_pred CCCCcceEEEEC-CCHHHHHHHHHHHHhCCC------cEEEEEEcCCH--HHHHHHHHh--------cCCCcccCCHHHH
Confidence 777789999999 799998 47888776421 2554 788753 222221111 1122334677776
Q ss_pred hC--CCcEEEEe
Q 019990 79 CK--DVNIAVMV 88 (332)
Q Consensus 79 ~~--~aDiVi~~ 88 (332)
++ +.|+|+++
T Consensus 64 l~~~~vD~V~i~ 75 (359)
T 3m2t_A 64 LNQVPLDAVVMA 75 (359)
T ss_dssp HHHSCCSEEEEC
T ss_pred hcCCCCCEEEEc
Confidence 65 56999986
|
| >2rir_A Dipicolinate synthase, A chain; structural genomics, APC1343, PSI-2, structure initiative; HET: MSE NAP; 2.79A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=95.34 E-value=0.069 Score=47.66 Aligned_cols=69 Identities=19% Similarity=0.150 Sum_probs=47.3
Q ss_pred CCcEEEEEcCCChhHHHHHHHHHhcccCCCCCCeEEEEEecccchhhhhhhHhhhhhhccCCccceEEeCCHHHHhCCCc
Q 019990 4 NPLRVLVTGAAGQIGYALVPMIARGIMLGPDQPVILHMLDIEPAAEALNGVKMELIDAAFPLLKGVVATTDVVEACKDVN 83 (332)
Q Consensus 4 ~~~kI~VtGaaG~IGs~l~~~L~~~~~~~~~~~~~i~l~D~~~~~~~~~~~~~dl~~~~~~~~~~v~~~~~~~~a~~~aD 83 (332)
..++|+|+| +|.+|+.++..|...|. +|..+|++.. +.. .+... ........++.+.++++|
T Consensus 156 ~g~~v~IiG-~G~iG~~~a~~l~~~G~-------~V~~~d~~~~--~~~----~~~~~----g~~~~~~~~l~~~l~~aD 217 (300)
T 2rir_A 156 HGSQVAVLG-LGRTGMTIARTFAALGA-------NVKVGARSSA--HLA----RITEM----GLVPFHTDELKEHVKDID 217 (300)
T ss_dssp TTSEEEEEC-CSHHHHHHHHHHHHTTC-------EEEEEESSHH--HHH----HHHHT----TCEEEEGGGHHHHSTTCS
T ss_pred CCCEEEEEc-ccHHHHHHHHHHHHCCC-------EEEEEECCHH--HHH----HHHHC----CCeEEchhhHHHHhhCCC
Confidence 467999999 69999999999988774 8999998531 111 11111 011112246777889999
Q ss_pred EEEEecC
Q 019990 84 IAVMVGG 90 (332)
Q Consensus 84 iVi~~ag 90 (332)
+|+.+..
T Consensus 218 vVi~~~p 224 (300)
T 2rir_A 218 ICINTIP 224 (300)
T ss_dssp EEEECCS
T ss_pred EEEECCC
Confidence 9999864
|
| >3hdj_A Probable ornithine cyclodeaminase; APC62486, bordetella pertussis TOH structural genomics, PSI-2, protein structure initiative; 1.70A {Bordetella pertussis} | Back alignment and structure |
|---|
Probab=95.31 E-value=0.046 Score=49.24 Aligned_cols=73 Identities=12% Similarity=0.027 Sum_probs=48.8
Q ss_pred CCcEEEEEcCCChhHHHHHHHHHhcccCCCCCCeEEEEEecccchhhhhhhHhhhhhhccCCccceEEeCCHHHHhCCCc
Q 019990 4 NPLRVLVTGAAGQIGYALVPMIARGIMLGPDQPVILHMLDIEPAAEALNGVKMELIDAAFPLLKGVVATTDVVEACKDVN 83 (332)
Q Consensus 4 ~~~kI~VtGaaG~IGs~l~~~L~~~~~~~~~~~~~i~l~D~~~~~~~~~~~~~dl~~~~~~~~~~v~~~~~~~~a~~~aD 83 (332)
+.++|+|+| +|.+|...+..|....-. .+|.++|++ . ......++... +...+... ++.++++++|
T Consensus 120 ~~~~v~iIG-aG~~a~~~~~al~~~~~~-----~~V~v~~r~-~---a~~la~~l~~~---~g~~~~~~-~~~eav~~aD 185 (313)
T 3hdj_A 120 RSSVLGLFG-AGTQGAEHAAQLSARFAL-----EAILVHDPY-A---SPEILERIGRR---CGVPARMA-APADIAAQAD 185 (313)
T ss_dssp TCCEEEEEC-CSHHHHHHHHHHHHHSCC-----CEEEEECTT-C---CHHHHHHHHHH---HTSCEEEC-CHHHHHHHCS
T ss_pred CCcEEEEEC-ccHHHHHHHHHHHHhCCC-----cEEEEECCc-H---HHHHHHHHHHh---cCCeEEEe-CHHHHHhhCC
Confidence 467899999 799999999988763212 289999986 2 22233333221 01133444 7888999999
Q ss_pred EEEEecC
Q 019990 84 IAVMVGG 90 (332)
Q Consensus 84 iVi~~ag 90 (332)
+||.+-.
T Consensus 186 IVi~aT~ 192 (313)
T 3hdj_A 186 IVVTATR 192 (313)
T ss_dssp EEEECCC
T ss_pred EEEEccC
Confidence 9998653
|
| >2d0i_A Dehydrogenase; structural genomics, NPPSFA, national project protein structural and functional analyses; 1.95A {Pyrococcus horikoshii} | Back alignment and structure |
|---|
Probab=95.31 E-value=0.037 Score=50.33 Aligned_cols=65 Identities=20% Similarity=0.152 Sum_probs=46.3
Q ss_pred CCcEEEEEcCCChhHHHHHHHHHhcccCCCCCCeEEEEEecccchhhhhhhHhhhhhhccCCccceEEeCCHHHHhCCCc
Q 019990 4 NPLRVLVTGAAGQIGYALVPMIARGIMLGPDQPVILHMLDIEPAAEALNGVKMELIDAAFPLLKGVVATTDVVEACKDVN 83 (332)
Q Consensus 4 ~~~kI~VtGaaG~IGs~l~~~L~~~~~~~~~~~~~i~l~D~~~~~~~~~~~~~dl~~~~~~~~~~v~~~~~~~~a~~~aD 83 (332)
..++|+|+| .|.||+.++..|...|. +|..+|++... ....+. .+.. .++.+.++++|
T Consensus 145 ~g~~vgIIG-~G~iG~~vA~~l~~~G~-------~V~~~d~~~~~----~~~~~~---------g~~~-~~l~e~l~~aD 202 (333)
T 2d0i_A 145 YGKKVGILG-MGAIGKAIARRLIPFGV-------KLYYWSRHRKV----NVEKEL---------KARY-MDIDELLEKSD 202 (333)
T ss_dssp TTCEEEEEC-CSHHHHHHHHHHGGGTC-------EEEEECSSCCH----HHHHHH---------TEEE-CCHHHHHHHCS
T ss_pred CcCEEEEEc-cCHHHHHHHHHHHHCCC-------EEEEECCCcch----hhhhhc---------Ccee-cCHHHHHhhCC
Confidence 357899999 79999999999987775 89999986421 111111 1222 36777789999
Q ss_pred EEEEecC
Q 019990 84 IAVMVGG 90 (332)
Q Consensus 84 iVi~~ag 90 (332)
+|+.+..
T Consensus 203 iVil~vp 209 (333)
T 2d0i_A 203 IVILALP 209 (333)
T ss_dssp EEEECCC
T ss_pred EEEEcCC
Confidence 9998753
|
| >1omo_A Alanine dehydrogenase; two-domain, beta-sandwich-dimer, rossmann-fold NAD domain, human MU crystallin homolog; HET: NAD; 2.32A {Archaeoglobus fulgidus} SCOP: c.2.1.13 PDB: 1vll_A | Back alignment and structure |
|---|
Probab=95.30 E-value=0.071 Score=48.18 Aligned_cols=73 Identities=15% Similarity=0.079 Sum_probs=49.2
Q ss_pred CCcEEEEEcCCChhHHHHHHHHHhcccCCCCCCeEEEEEecccchhhhhhhHhhhhhhccCCccceEEeCCHHHHhCCCc
Q 019990 4 NPLRVLVTGAAGQIGYALVPMIARGIMLGPDQPVILHMLDIEPAAEALNGVKMELIDAAFPLLKGVVATTDVVEACKDVN 83 (332)
Q Consensus 4 ~~~kI~VtGaaG~IGs~l~~~L~~~~~~~~~~~~~i~l~D~~~~~~~~~~~~~dl~~~~~~~~~~v~~~~~~~~a~~~aD 83 (332)
+.++|+|+| +|.+|...+..|....-. .++.++|++. ++.+....++... . ..+. ..+..+++ ++|
T Consensus 124 ~~~~v~iIG-aG~~a~~~~~al~~~~~~-----~~V~v~~r~~--~~a~~la~~~~~~---~-~~~~-~~~~~e~v-~aD 189 (322)
T 1omo_A 124 NSSVFGFIG-CGTQAYFQLEALRRVFDI-----GEVKAYDVRE--KAAKKFVSYCEDR---G-ISAS-VQPAEEAS-RCD 189 (322)
T ss_dssp TCCEEEEEC-CSHHHHHHHHHHHHHSCC-----CEEEEECSSH--HHHHHHHHHHHHT---T-CCEE-ECCHHHHT-SSS
T ss_pred CCCEEEEEc-CcHHHHHHHHHHHHhCCc-----cEEEEECCCH--HHHHHHHHHHHhc---C-ceEE-ECCHHHHh-CCC
Confidence 467999999 799999999988763211 2899999864 3444333333221 0 1244 56788889 999
Q ss_pred EEEEecC
Q 019990 84 IAVMVGG 90 (332)
Q Consensus 84 iVi~~ag 90 (332)
+|+.+-.
T Consensus 190 vVi~aTp 196 (322)
T 1omo_A 190 VLVTTTP 196 (322)
T ss_dssp EEEECCC
T ss_pred EEEEeeC
Confidence 9998753
|
| >2vhw_A Alanine dehydrogenase; NAD, secreted, oxidoreductase; HET: NAI; 2.0A {Mycobacterium tuberculosis} PDB: 2vhx_A* 2vhy_A 2vhz_A* 2vhv_A* 2voe_A 2voj_A* | Back alignment and structure |
|---|
Probab=95.27 E-value=0.028 Score=52.08 Aligned_cols=77 Identities=19% Similarity=0.216 Sum_probs=48.9
Q ss_pred CCcEEEEEcCCChhHHHHHHHHHhcccCCCCCCeEEEEEecccchhhhhhhHhhhhhhccCCccceEEeCCHHHHhCCCc
Q 019990 4 NPLRVLVTGAAGQIGYALVPMIARGIMLGPDQPVILHMLDIEPAAEALNGVKMELIDAAFPLLKGVVATTDVVEACKDVN 83 (332)
Q Consensus 4 ~~~kI~VtGaaG~IGs~l~~~L~~~~~~~~~~~~~i~l~D~~~~~~~~~~~~~dl~~~~~~~~~~v~~~~~~~~a~~~aD 83 (332)
..++|+|+|+ |.||..++..+...|. +|..+|++. +++... .+. .............++.+.++++|
T Consensus 167 ~g~~V~ViG~-G~iG~~~a~~a~~~Ga-------~V~~~d~~~--~~l~~~-~~~--~g~~~~~~~~~~~~l~~~l~~aD 233 (377)
T 2vhw_A 167 EPADVVVIGA-GTAGYNAARIANGMGA-------TVTVLDINI--DKLRQL-DAE--FCGRIHTRYSSAYELEGAVKRAD 233 (377)
T ss_dssp CCCEEEEECC-SHHHHHHHHHHHHTTC-------EEEEEESCH--HHHHHH-HHH--TTTSSEEEECCHHHHHHHHHHCS
T ss_pred CCCEEEEECC-CHHHHHHHHHHHhCCC-------EEEEEeCCH--HHHHHH-HHh--cCCeeEeccCCHHHHHHHHcCCC
Confidence 4679999995 9999999999988775 799999864 222211 110 00000000111234566778999
Q ss_pred EEEEecCCCC
Q 019990 84 IAVMVGGFPR 93 (332)
Q Consensus 84 iVi~~ag~~~ 93 (332)
+||.+++.+.
T Consensus 234 vVi~~~~~p~ 243 (377)
T 2vhw_A 234 LVIGAVLVPG 243 (377)
T ss_dssp EEEECCCCTT
T ss_pred EEEECCCcCC
Confidence 9999887664
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 332 | ||||
| d7mdha2 | 188 | d.162.1.1 (A:198-385) Malate dehydrogenase {Sorghu | 6e-59 | |
| d7mdha1 | 175 | c.2.1.5 (A:23-197) Malate dehydrogenase {Sorghum ( | 6e-58 | |
| d5mdha2 | 179 | d.162.1.1 (A:155-333) Malate dehydrogenase {Pig (S | 2e-57 | |
| d1y7ta2 | 173 | d.162.1.1 (A:154-332) Malate dehydrogenase {Thermu | 2e-50 | |
| d5mdha1 | 154 | c.2.1.5 (A:1-154) Malate dehydrogenase {Pig (Sus s | 2e-44 | |
| d1y7ta1 | 154 | c.2.1.5 (A:0-153) Malate dehydrogenase {Thermus th | 3e-44 | |
| d1b8pa2 | 171 | d.162.1.1 (A:159-329) Malate dehydrogenase {Aquasp | 4e-41 | |
| d1ldma2 | 169 | d.162.1.1 (A:161-329) Lactate dehydrogenase {Dogfi | 8e-33 | |
| d1i0za2 | 172 | d.162.1.1 (A:161-332) Lactate dehydrogenase {Human | 1e-32 | |
| d2ldxa2 | 172 | d.162.1.1 (A:160-331) Lactate dehydrogenase {Mouse | 6e-32 | |
| d1guza2 | 163 | d.162.1.1 (A:143-305) Malate dehydrogenase {Chloro | 1e-31 | |
| d1llda2 | 170 | d.162.1.1 (A:150-319) Lactate dehydrogenase {Bifid | 5e-31 | |
| d2cmda2 | 167 | d.162.1.1 (A:146-312) Malate dehydrogenase {Escher | 2e-30 | |
| d1uxja2 | 164 | d.162.1.1 (A:144-307) Malate dehydrogenase {Chloro | 6e-30 | |
| d1y6ja2 | 169 | d.162.1.1 (A:149-317) Lactate dehydrogenase {Clost | 7e-30 | |
| d1mlda2 | 169 | d.162.1.1 (A:145-313) Malate dehydrogenase {Pig (S | 4e-29 | |
| d1pzga2 | 174 | d.162.1.1 (A:164-334) Lactate dehydrogenase {Toxop | 2e-28 | |
| d1ldna2 | 168 | d.162.1.1 (A:163-330) Lactate dehydrogenase {Bacil | 4e-28 | |
| d1hyea2 | 168 | d.162.1.1 (A:146-313) MJ0490, lactate/malate dehyd | 3e-27 | |
| d1ez4a2 | 171 | d.162.1.1 (A:163-334) Lactate dehydrogenase {Lacto | 3e-27 | |
| d1llca2 | 172 | d.162.1.1 (A:165-334) Lactate dehydrogenase {Lacto | 1e-26 | |
| d1a5za2 | 172 | d.162.1.1 (A:164-333) Lactate dehydrogenase {Therm | 2e-26 | |
| d2cmda1 | 145 | c.2.1.5 (A:1-145) Malate dehydrogenase {Escherichi | 1e-25 | |
| d1hyha2 | 163 | d.162.1.1 (A:167-329) L-2-hydroxyisocapronate dehy | 6e-25 | |
| d1t2da2 | 165 | d.162.1.1 (A:151-315) Lactate dehydrogenase {Malar | 9e-24 | |
| d1mlda1 | 144 | c.2.1.5 (A:1-144) Malate dehydrogenase {Pig (Sus s | 6e-23 | |
| d1o6za2 | 161 | d.162.1.1 (A:163-330) Malate dehydrogenase {Archae | 6e-22 | |
| d1o6za1 | 142 | c.2.1.5 (A:22-162) Malate dehydrogenase {Archaeon | 1e-19 | |
| d1guza1 | 142 | c.2.1.5 (A:1-142) Malate dehydrogenase {Chlorobium | 3e-18 | |
| d1hyea1 | 145 | c.2.1.5 (A:1-145) MJ0490, lactate/malate dehydroge | 1e-17 | |
| d1llda1 | 143 | c.2.1.5 (A:7-149) Lactate dehydrogenase {Bifidobac | 3e-16 | |
| d1a5za1 | 140 | c.2.1.5 (A:22-163) Lactate dehydrogenase {Thermoto | 7e-15 | |
| d1ojua1 | 142 | c.2.1.5 (A:22-163) Malate dehydrogenase {Archaeon | 3e-13 | |
| d1ez4a1 | 146 | c.2.1.5 (A:16-162) Lactate dehydrogenase {Lactobac | 1e-12 | |
| d1hyha1 | 146 | c.2.1.5 (A:21-166) L-2-hydroxyisocapronate dehydro | 3e-12 | |
| d1ldna1 | 148 | c.2.1.5 (A:15-162) Lactate dehydrogenase {Bacillus | 2e-11 | |
| d1y6ja1 | 142 | c.2.1.5 (A:7-148) Lactate dehydrogenase {Clostridi | 2e-10 | |
| d2ldxa1 | 159 | c.2.1.5 (A:1-159) Lactate dehydrogenase {Mouse (Mu | 4e-10 | |
| d1uxja1 | 142 | c.2.1.5 (A:2-143) Malate dehydrogenase {Chloroflex | 4e-10 | |
| d1i0za1 | 160 | c.2.1.5 (A:1-160) Lactate dehydrogenase {Human (Ho | 7e-10 | |
| d1up7a1 | 162 | c.2.1.5 (A:1-162) 6-phospho-beta-glucosidase {Ther | 7e-10 | |
| d1u8xx1 | 167 | c.2.1.5 (X:3-169) Maltose-6'-phosphate glucosidase | 2e-08 | |
| d1pzga1 | 154 | c.2.1.5 (A:14-163) Lactate dehydrogenase {Toxoplas | 2e-08 | |
| d1t2da1 | 150 | c.2.1.5 (A:1-150) Lactate dehydrogenase {Malaria p | 2e-06 | |
| d1s6ya1 | 169 | c.2.1.5 (A:4-172) 6-phospho-beta-glucosidase {Baci | 6e-06 | |
| d1obba1 | 171 | c.2.1.5 (A:2-172) Alpha-glucosidase AglA {Thermoto | 1e-05 | |
| d1e6ua_ | 315 | c.2.1.2 (A:) GDP-4-keto-6-deoxy-d-mannose epimeras | 4e-04 | |
| d2c5aa1 | 363 | c.2.1.2 (A:13-375) GDP-mannose-3', 5'-epimerase {T | 0.003 | |
| d1ek6a_ | 346 | c.2.1.2 (A:) Uridine diphosphogalactose-4-epimeras | 0.004 |
| >d7mdha2 d.162.1.1 (A:198-385) Malate dehydrogenase {Sorghum (Sorghum vulgare), chloroplast [TaxId: 4558]} Length = 188 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: LDH C-terminal domain-like superfamily: LDH C-terminal domain-like family: Lactate & malate dehydrogenases, C-terminal domain domain: Malate dehydrogenase species: Sorghum (Sorghum vulgare), chloroplast [TaxId: 4558]
Score = 186 bits (472), Expect = 6e-59
Identities = 68/170 (40%), Positives = 96/170 (56%), Gaps = 6/170 (3%)
Query: 157 TRLDHNRAMGQISERLKVHVSDVKNVIIWGNHSSTQYPDVNHATVTTSKGEKPVREAVAD 216
TRLD NRA Q++ + V V NV IWGNHS+TQ PD +A + +PV+E +
Sbjct: 1 TRLDENRAKCQLALKAGVFYDKVSNVTIWGNHSTTQVPDFLNAKIDG----RPVKEVIKR 56
Query: 217 DNWLNTEFITTVQQRGAAIIKARKLSSALSAASSACDHIRDWVLGTPKGTWVSMGVYSDG 276
WL EF TVQ+RG A+I+ SSA S A S D I+ V TP+G W S GVY+ G
Sbjct: 57 TKWLEEEFTITVQKRGGALIQKWGRSSAASTAVSIADAIKSLVTPTPEGDWFSTGVYTTG 116
Query: 277 S-YGIPEGLIYSFPVTCEK-GEWSIVKGLKVDEFSRAKMDATAEELAEEK 324
+ YGI E +++S P + G++ + + D+F ++ + EL EK
Sbjct: 117 NPYGIAEDIVFSMPCRSKGDGDYELATDVSNDDFLWERIKKSEAELLAEK 166
|
| >d7mdha1 c.2.1.5 (A:23-197) Malate dehydrogenase {Sorghum (Sorghum vulgare), chloroplast [TaxId: 4558]} Length = 175 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Malate dehydrogenase species: Sorghum (Sorghum vulgare), chloroplast [TaxId: 4558]
Score = 182 bits (464), Expect = 6e-58
Identities = 69/156 (44%), Positives = 92/156 (58%)
Query: 1 MAKNPLRVLVTGAAGQIGYALVPMIARGIMLGPDQPVILHMLDIEPAAEALNGVKMELID 60
K + + V+GAAG I L+ +A G + G DQP+ L +L E + +AL GV MEL D
Sbjct: 20 SWKKLVNIAVSGAAGMISNHLLFKLASGEVFGQDQPIALKLLGSERSFQALEGVAMELED 79
Query: 61 AAFPLLKGVVATTDVVEACKDVNIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEKH 120
+ +PLL+ V D E +DV+ A+++G PR GMER ++ N I+ Q AL
Sbjct: 80 SLYPLLREVSIGIDPYEVFEDVDWALLIGAKPRGPGMERAALLDINGQIFADQGKALNAV 139
Query: 121 AAPNCKVLVVANPANTNALILKEFAPSIPAKNITCL 156
A+ N KVLVV NP NTNALI + AP IPAKN L
Sbjct: 140 ASKNVKVLVVGNPCNTNALICLKNAPDIPAKNFHAL 175
|
| >d5mdha2 d.162.1.1 (A:155-333) Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 9823]} Length = 179 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: LDH C-terminal domain-like superfamily: LDH C-terminal domain-like family: Lactate & malate dehydrogenases, C-terminal domain domain: Malate dehydrogenase species: Pig (Sus scrofa) [TaxId: 9823]
Score = 181 bits (461), Expect = 2e-57
Identities = 116/177 (65%), Positives = 137/177 (77%), Gaps = 1/177 (0%)
Query: 157 TRLDHNRAMGQISERLKVHVSDVKNVIIWGNHSSTQYPDVNHATVTTSKGEKPVREAVAD 216
TRLDHNRA QI+ +L V DVKNVIIWGNHSSTQYPDVNHA V E V EAV D
Sbjct: 1 TRLDHNRAKAQIALKLGVTSDDVKNVIIWGNHSSTQYPDVNHAKVKLQAKEVGVYEAVKD 60
Query: 217 DNWLNTEFITTVQQRGAAIIKARKLSSALSAASSACDHIRDWVLGTPKGTWVSMGVYSDG 276
D+WL EFITTVQQRGAA+IKARKLSSA+SAA + CDH+RD GTP+G +VSMG+ SDG
Sbjct: 61 DSWLKGEFITTVQQRGAAVIKARKLSSAMSAAKAICDHVRDIWFGTPEGEFVSMGIISDG 120
Query: 277 -SYGIPEGLIYSFPVTCEKGEWSIVKGLKVDEFSRAKMDATAEELAEEKTLAYSCLN 332
SYG+P+ L+YSFPVT + W IV+GL +++FSR KMD TA+ELAEEK A+ L+
Sbjct: 121 NSYGVPDDLLYSFPVTIKDKTWKIVEGLPINDFSREKMDLTAKELAEEKETAFEFLS 177
|
| >d1y7ta2 d.162.1.1 (A:154-332) Malate dehydrogenase {Thermus thermophilus [TaxId: 274]} Length = 173 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: LDH C-terminal domain-like superfamily: LDH C-terminal domain-like family: Lactate & malate dehydrogenases, C-terminal domain domain: Malate dehydrogenase species: Thermus thermophilus [TaxId: 274]
Score = 163 bits (414), Expect = 2e-50
Identities = 86/169 (50%), Positives = 118/169 (69%), Gaps = 5/169 (2%)
Query: 156 LTRLDHNRAMGQISERLKVHVSDVKNVIIWGNHSSTQYPDVNHATVTTSKGEKPVREAVA 215
+TRLDHNRA Q++++ V ++ + +WGNHSST +PD+ HA V + +
Sbjct: 1 MTRLDHNRAKAQLAKKTGTGVDRIRRMTVWGNHSSTMFPDLFHAEVDGRPALE-----LV 55
Query: 216 DDNWLNTEFITTVQQRGAAIIKARKLSSALSAASSACDHIRDWVLGTPKGTWVSMGVYSD 275
D W FI TV QRGAAII+AR SSA SAA++A +HIRDW LGTP+G WVSM V S
Sbjct: 56 DMEWYEKVFIPTVAQRGAAIIQARGASSAASAANAAIEHIRDWALGTPEGDWVSMAVPSQ 115
Query: 276 GSYGIPEGLIYSFPVTCEKGEWSIVKGLKVDEFSRAKMDATAEELAEEK 324
G YGIPEG++YSFPVT + G + +V+GL+++EF+R +M+ TA+EL +E
Sbjct: 116 GEYGIPEGIVYSFPVTAKDGAYRVVEGLEINEFARKRMEITAQELLDEM 164
|
| >d5mdha1 c.2.1.5 (A:1-154) Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 9823]} Length = 154 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Malate dehydrogenase species: Pig (Sus scrofa) [TaxId: 9823]
Score = 147 bits (373), Expect = 2e-44
Identities = 83/153 (54%), Positives = 109/153 (71%)
Query: 4 NPLRVLVTGAAGQIGYALVPMIARGIMLGPDQPVILHMLDIEPAAEALNGVKMELIDAAF 63
P+RVLVTGAAGQI Y+L+ I G + G DQP+IL +LDI P L+GV MEL D A
Sbjct: 2 EPIRVLVTGAAGQIAYSLLYSIGNGSVFGKDQPIILVLLDITPMMGVLDGVLMELQDCAL 61
Query: 64 PLLKGVVATTDVVEACKDVNIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEKHAAP 123
PLLK V+AT A KD+++A++VG PR++GMERKD++ NV I+K Q +AL+K+A
Sbjct: 62 PLLKDVIATDKEEIAFKDLDVAILVGSMPRRDGMERKDLLKANVKIFKCQGAALDKYAKK 121
Query: 124 NCKVLVVANPANTNALILKEFAPSIPAKNITCL 156
+ KV+VV NPANTN L + APSIP +N +CL
Sbjct: 122 SVKVIVVGNPANTNCLTASKSAPSIPKENFSCL 154
|
| >d1y7ta1 c.2.1.5 (A:0-153) Malate dehydrogenase {Thermus thermophilus [TaxId: 274]} Length = 154 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Malate dehydrogenase species: Thermus thermophilus [TaxId: 274]
Score = 147 bits (371), Expect = 3e-44
Identities = 85/152 (55%), Positives = 104/152 (68%)
Query: 3 KNPLRVLVTGAAGQIGYALVPMIARGIMLGPDQPVILHMLDIEPAAEALNGVKMELIDAA 62
K P+RV VTGAAGQIGY+L+ IA G MLG DQPVIL +L+I A +AL GV MEL D A
Sbjct: 2 KAPVRVAVTGAAGQIGYSLLFRIAAGEMLGKDQPVILQLLEIPQAMKALEGVVMELEDCA 61
Query: 63 FPLLKGVVATTDVVEACKDVNIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEKHAA 122
FPLL G+ AT D A KD + A++VG PRK GMER+D++ N I+ Q AL + A
Sbjct: 62 FPLLAGLEATDDPKVAFKDADYALLVGAAPRKAGMERRDLLQVNGKIFTEQGRALAEVAK 121
Query: 123 PNCKVLVVANPANTNALILKEFAPSIPAKNIT 154
+ KVLVV NPANTNALI + AP + +N T
Sbjct: 122 KDVKVLVVGNPANTNALIAYKNAPGLNPRNFT 153
|
| >d1b8pa2 d.162.1.1 (A:159-329) Malate dehydrogenase {Aquaspirillum arcticum [TaxId: 87645]} Length = 171 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: LDH C-terminal domain-like superfamily: LDH C-terminal domain-like family: Lactate & malate dehydrogenases, C-terminal domain domain: Malate dehydrogenase species: Aquaspirillum arcticum [TaxId: 87645]
Score = 139 bits (351), Expect = 4e-41
Identities = 84/167 (50%), Positives = 113/167 (67%), Gaps = 5/167 (2%)
Query: 158 RLDHNRAMGQISERLKVHVSDVKNVIIWGNHSSTQYPDVNHATVTTSKGEKPVREAVADD 217
RLDHNRA+ QI+ + VS ++ + +WGNHS T Y D +A + V++ + DD
Sbjct: 2 RLDHNRALSQIAAKTGKPVSSIEKLFVWGNHSPTMYADYRYAQI----DGASVKDMINDD 57
Query: 218 NWLNTEFITTVQQRGAAIIKARKLSSALSAASSACDHIRDWVLGTPKGTWVSMGVYSDGS 277
W F+ TV +RGAAII AR +SSA SAA++A DHI DWVLGT W +MG+ SDGS
Sbjct: 58 AWNRDTFLPTVGKRGAAIIDARGVSSAASAANAAIDHIHDWVLGTAG-KWTTMGIPSDGS 116
Query: 278 YGIPEGLIYSFPVTCEKGEWSIVKGLKVDEFSRAKMDATAEELAEEK 324
YGIPEG+I+ FPVT E GE+ IV+GL +D FS+ +++ T EL EE+
Sbjct: 117 YGIPEGVIFGFPVTTENGEYKIVQGLSIDAFSQERINVTLNELLEEQ 163
|
| >d1ldma2 d.162.1.1 (A:161-329) Lactate dehydrogenase {Dogfish (Squalus acanthias) [TaxId: 7797]} Length = 169 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: LDH C-terminal domain-like superfamily: LDH C-terminal domain-like family: Lactate & malate dehydrogenases, C-terminal domain domain: Lactate dehydrogenase species: Dogfish (Squalus acanthias) [TaxId: 7797]
Score = 117 bits (294), Expect = 8e-33
Identities = 21/166 (12%), Positives = 44/166 (26%), Gaps = 6/166 (3%)
Query: 157 TRLDHNRAMGQISERLKVHVSDVKNVIIWGNHSSTQYPDVNHATVTTSKGEKPVREAVAD 216
LD R + ERL VH +I H + + +
Sbjct: 3 CNLDSARFRYLMGERLGVHSCSCHGWVIGE-HGDSVPSVWSGMN----VASIKLHPLDGT 57
Query: 217 DNWLNTEFITTVQQRGAAIIKARKLSSALSAASSACDHIRDWVLGTPKGTWVSMGVYSDG 276
+ +A + A + + + ++ +
Sbjct: 58 NKDKQDWKKLHKDVVDSAYEVIKLKGYTSWAIGLSVADLAETIMKNLCR-VHPVSTMVKD 116
Query: 277 SYGIPEGLIYSFPVTCEKGEWSIVKGLKVDEFSRAKMDATAEELAE 322
YGI + + S P S + +K+ ++ +A L +
Sbjct: 117 FYGIKDNVFLSLPCVLNDHGISNIVKMKLKPNEEQQLQKSATTLWD 162
|
| >d1i0za2 d.162.1.1 (A:161-332) Lactate dehydrogenase {Human (Homo sapiens), heart isoform (H chain) [TaxId: 9606]} Length = 172 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: LDH C-terminal domain-like superfamily: LDH C-terminal domain-like family: Lactate & malate dehydrogenases, C-terminal domain domain: Lactate dehydrogenase species: Human (Homo sapiens), heart isoform (H chain) [TaxId: 9606]
Score = 117 bits (294), Expect = 1e-32
Identities = 28/168 (16%), Positives = 57/168 (33%), Gaps = 3/168 (1%)
Query: 157 TRLDHNRAMGQISERLKVHVSDVKNVIIWGNHSSTQYPDVNHATVTTSKGEKPVREAVAD 216
LD R ++E+L +H S + I G H + + V ++ E D
Sbjct: 3 CNLDSARFRYLMAEKLGIHPSSC-HGWILGEHGDSSVAVWSGVNVAGVSLQELNPEMGTD 61
Query: 217 DNWLNTEFITTVQQRGAAIIKARKLSSALSAASSACDHIRDWVLGTPKGTWVSMGVYSDG 276
++ N + + + A + K + + A + + G
Sbjct: 62 NDSENWKEVHKMVVESAYEVIKLKGYT--NWAIGLSVADLIESMLKNLSRIHPVSTMVKG 119
Query: 277 SYGIPEGLIYSFPVTCEKGEWSIVKGLKVDEFSRAKMDATAEELAEEK 324
YGI + S P + V K+ + A++ +A+ L + +
Sbjct: 120 MYGIENEVFLSLPCILNARGLTSVINQKLKDDEVAQLKKSADTLWDIQ 167
|
| >d2ldxa2 d.162.1.1 (A:160-331) Lactate dehydrogenase {Mouse (Mus musculus) [TaxId: 10090]} Length = 172 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: LDH C-terminal domain-like superfamily: LDH C-terminal domain-like family: Lactate & malate dehydrogenases, C-terminal domain domain: Lactate dehydrogenase species: Mouse (Mus musculus) [TaxId: 10090]
Score = 115 bits (289), Expect = 6e-32
Identities = 25/168 (14%), Positives = 50/168 (29%), Gaps = 3/168 (1%)
Query: 157 TRLDHNRAMGQISERLKVHVSDVKNVIIWGNHSSTQYPDVNHATVTTSKGEKPVREAVAD 216
LD R I E+L V+ + + + G H + P + V + D
Sbjct: 3 CNLDSARFRYLIGEKLGVNPTSC-HGWVLGEHGDSSVPIWSGVNVAGVTLKSLNPAIGTD 61
Query: 217 DNWLNTEFITTVQQRGAAIIKARKLSSALSAASSACDHIRDWVLGTPKGTWVSMGVYSDG 276
N + + + G + K + S A + + G
Sbjct: 62 KNKQHWKNVHKQVVEGGYEVLDMKGYT--SWAIGLSVTDLARSILKNLKRVHPVTTLVKG 119
Query: 277 SYGIPEGLIYSFPVTCEKGEWSIVKGLKVDEFSRAKMDATAEELAEEK 324
+GI E + S P + + + + + +A+ L +
Sbjct: 120 FHGIKEEVFLSIPCVLGESGITDFVKVNMTAEEEGLLKKSADTLWNMQ 167
|
| >d1guza2 d.162.1.1 (A:143-305) Malate dehydrogenase {Chlorobium vibrioforme [TaxId: 1098]} Length = 163 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: LDH C-terminal domain-like superfamily: LDH C-terminal domain-like family: Lactate & malate dehydrogenases, C-terminal domain domain: Malate dehydrogenase species: Chlorobium vibrioforme [TaxId: 1098]
Score = 114 bits (287), Expect = 1e-31
Identities = 31/164 (18%), Positives = 60/164 (36%), Gaps = 9/164 (5%)
Query: 159 LDHNRAMGQISERLKVHVSDVKNVIIWGNHSSTQYPDVNHATVTTSKGEKPVREAVADDN 218
LD R I+ L V + D+ N + G H P V + + +
Sbjct: 4 LDAARFRSFIAMELGVSMQDI-NACVLGGHGDAMVPVVKY------TTVAGIPISDLLPA 56
Query: 219 WLNTEFITTVQQRGAAIIKARKLSSALSAASSACDHIRDWVLGTPKGTWVSMGVYSDGSY 278
+ + + GA I++ K SA A +S+ + + ++ K + V +G Y
Sbjct: 57 ETIDKLVERTRNGGAEIVEHLKQGSAFYAPASSVVEMVESIVLDRKR-VLPCAVGLEGQY 115
Query: 279 GIPEGLIYSFPVTCEKGEWSIVKGLKVDEFSRAKMDATAEELAE 322
GI + + G I + +D+ + +A+ + E
Sbjct: 116 GIDKTFVGVPVKLGRNGVEQIY-EINLDQADLDLLQKSAKIVDE 158
|
| >d1llda2 d.162.1.1 (A:150-319) Lactate dehydrogenase {Bifidobacterium longum, strain am101-2 [TaxId: 216816]} Length = 170 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: LDH C-terminal domain-like superfamily: LDH C-terminal domain-like family: Lactate & malate dehydrogenases, C-terminal domain domain: Lactate dehydrogenase species: Bifidobacterium longum, strain am101-2 [TaxId: 216816]
Score = 112 bits (282), Expect = 5e-31
Identities = 33/167 (19%), Positives = 58/167 (34%), Gaps = 5/167 (2%)
Query: 157 TRLDHNRAMGQISERLKVHVSDVKNVIIWGNHSSTQYPDVNHATVTTSKGEKPVR-EAVA 215
T LD R I+++ V+V +V + I G H ++ P AT+
Sbjct: 1 TNLDSARLRFLIAQQTGVNVKNV-HAYIAGEHGDSEVPLWESATIGGVPMSDWTPLPGHD 59
Query: 216 DDNWLNTEFITTVQQRGAAIIKARKLSSALSAASSACDHIRDWVLGTPKGTWVSMGVYSD 275
+ E I + A I K ++ + S D I + T + + +
Sbjct: 60 PLDADKREEIHQEVKNAAYKIINGKGATNYAIGMSGVDIIEAVLHDTNR--ILPVSSMLK 117
Query: 276 GSYGIPEGLIYSFPVTCEKGEWSIVKGLKVDEFSRAKMDATAEELAE 322
+GI + S P + + V + A + +AE L E
Sbjct: 118 DFHGI-SDICMSVPTLLNRQGVNNTINTPVSDKELAALKRSAETLKE 163
|
| >d2cmda2 d.162.1.1 (A:146-312) Malate dehydrogenase {Escherichia coli [TaxId: 562]} Length = 167 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: LDH C-terminal domain-like superfamily: LDH C-terminal domain-like family: Lactate & malate dehydrogenases, C-terminal domain domain: Malate dehydrogenase species: Escherichia coli [TaxId: 562]
Score = 111 bits (278), Expect = 2e-30
Identities = 21/168 (12%), Positives = 51/168 (30%), Gaps = 13/168 (7%)
Query: 157 TRLDHNRAMGQISERLKVHVSDVKNVIIWGNHSSTQYPDVNHATVTTSKGEKPVREAVAD 216
T LD R+ ++E +V+ +I G+ T P ++ V+
Sbjct: 2 TTLDIIRSNTFVAELKGKQPGEVEVPVIGGHSGVTILPLLSQVPG------------VSF 49
Query: 217 DNWLNTEFITTVQQRGAAIIKARKLSSALSAASSACDHIRDWVLGTPKGTWVSMGVYSDG 276
+ +Q G +++A+ + + + L + +
Sbjct: 50 TEQEVADLTKRIQNAGTEVVEAKAGGGSATLSMGQAAARFGLSLVRALQGEQGVVECAYV 109
Query: 277 SYGIPEGLIYSFPVTCEK-GEWSIVKGLKVDEFSRAKMDATAEELAEE 323
+S P+ K G + F + ++ + L ++
Sbjct: 110 EGDGQYARFFSQPLLLGKNGVEERKSIGTLSAFEQNALEGMLDTLKKD 157
|
| >d1uxja2 d.162.1.1 (A:144-307) Malate dehydrogenase {Chloroflexus aurantiacus [TaxId: 1108]} Length = 164 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: LDH C-terminal domain-like superfamily: LDH C-terminal domain-like family: Lactate & malate dehydrogenases, C-terminal domain domain: Malate dehydrogenase species: Chloroflexus aurantiacus [TaxId: 1108]
Score = 110 bits (275), Expect = 6e-30
Identities = 32/165 (19%), Positives = 62/165 (37%), Gaps = 9/165 (5%)
Query: 159 LDHNRAMGQISERLKVHVSDVKNVIIWGNHSSTQYPDVNHATVTTSKGEKPVREAVADDN 218
LD R I+ V V DV ++ G H P +T++ + +
Sbjct: 4 LDAARYRTFIAMEAGVSVKDV-QAMLMGGHGDEMVPLPRFSTISGIPVSEFI------AP 56
Query: 219 WLNTEFITTVQQRGAAIIKARKLSSALSAASSACDHIRDWVLGTPKGTWVSMGVYSDGSY 278
+ + ++ G I+ K SA A ++A + + VL K + + Y G Y
Sbjct: 57 DRLAQIVERTRKGGGEIVNLLKTGSAYYAPAAATAQMVEAVLKDKKR-VMPVAAYLTGQY 115
Query: 279 GIPEGLIYSFPVTCEKGEWSIVKGLKVDEFSRAKMDATAEELAEE 323
G+ + + G + L ++E A ++A+A+ +
Sbjct: 116 GLNDIYFGVPVILGAGG-VEKILELPLNEEEMALLNASAKAVRAT 159
|
| >d1y6ja2 d.162.1.1 (A:149-317) Lactate dehydrogenase {Clostridium thermocellum [TaxId: 1515]} Length = 169 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: LDH C-terminal domain-like superfamily: LDH C-terminal domain-like family: Lactate & malate dehydrogenases, C-terminal domain domain: Lactate dehydrogenase species: Clostridium thermocellum [TaxId: 1515]
Score = 109 bits (274), Expect = 7e-30
Identities = 32/167 (19%), Positives = 61/167 (36%), Gaps = 4/167 (2%)
Query: 157 TRLDHNRAMGQISERLKVHVSDVKNVIIWGNHSSTQYPDVNHATVTTSKGEKPVREAVAD 216
T LD R +SE+L V V +V + I G H +Q P + + + + + +
Sbjct: 1 TVLDSIRFRYLLSEKLGVDVKNV-HGYIIGEHGDSQLPLWSCTHIAGKNINEYIDDPKCN 59
Query: 217 DNWLNTEFITTVQQRGAAIIKARKLSSALSAASSACDHIRDWVLGTPKGTWVSMGVYSDG 276
+ + I + A I K ++ A S + + + T ++G +G
Sbjct: 60 FTEEDKKKIAEDVKTAGATIIKNKGATYYGIAVSINTIVETLL--KNQNTIRTVGTVING 117
Query: 277 SYGIPEGLIYSFPVTCEKGEWSIVKGLKVDEFSRAKMDATAEELAEE 323
YGI + I P V + + +AE++ +
Sbjct: 118 MYGIEDVAIS-LPSIVNSEGVQEVLQFNLTPEEEEALRFSAEQVKKV 163
|
| >d1mlda2 d.162.1.1 (A:145-313) Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 9823]} Length = 169 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: LDH C-terminal domain-like superfamily: LDH C-terminal domain-like family: Lactate & malate dehydrogenases, C-terminal domain domain: Malate dehydrogenase species: Pig (Sus scrofa) [TaxId: 9823]
Score = 107 bits (269), Expect = 4e-29
Identities = 26/167 (15%), Positives = 54/167 (32%), Gaps = 12/167 (7%)
Query: 157 TRLDHNRAMGQISERLKVHVSDVKNVIIWGNHSSTQYPDVNHATVTTSKGEKPVREAVAD 216
T LD RA ++E + + V +I G+ T P ++ T + +
Sbjct: 2 TTLDIVRANAFVAELKGLDPARVSVPVIGGHAGKTIIPLISQCTPKVDFPQDQLS----- 56
Query: 217 DNWLNTEFITTVQQRGAAIIKARKLSSALSAASSACDHIRDWVLGTPKGTWVSMGVYSDG 276
+Q+ G ++KA+ + + + + + + L + S
Sbjct: 57 ------TLTGRIQEAGTEVVKAKAGAGSATLSMAYAGARFVFSLVDAMNGKEGVVECSFV 110
Query: 277 SYGIPEGLIYSFPVTCEK-GEWSIVKGLKVDEFSRAKMDATAEELAE 322
+ +S P+ K G + K+ F + EL
Sbjct: 111 KSQETDCPYFSTPLLLGKKGIEKNLGIGKISPFEEKMIAEAIPELKA 157
|
| >d1pzga2 d.162.1.1 (A:164-334) Lactate dehydrogenase {Toxoplasma gondii [TaxId: 5811]} Length = 174 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: LDH C-terminal domain-like superfamily: LDH C-terminal domain-like family: Lactate & malate dehydrogenases, C-terminal domain domain: Lactate dehydrogenase species: Toxoplasma gondii [TaxId: 5811]
Score = 106 bits (265), Expect = 2e-28
Identities = 34/166 (20%), Positives = 64/166 (38%), Gaps = 4/166 (2%)
Query: 159 LDHNRAMGQISERLKVHVSDVKNVIIWGNHSSTQYPDVNHATVTTSKGEKPVREAVADDN 218
LD R +++ L V DV + G H P V + TV +K +++ V +
Sbjct: 4 LDSGRFRRYVADALSVSPRDV-QATVIGTHGDCMVPLVRYITVNGYPIQKFIKDGVVTEK 62
Query: 219 WLNTEFITTVQQRGAAIIKARKLSSALSAASSACDHIRDWVLGTPKGTWVSMGVYSDGSY 278
L E + G I++ SA A +++ + L K + VY +G Y
Sbjct: 63 QLE-EIAEHTKVSGGEIVRFLGQGSAYYAPAASAVAMATSFLNDEKR-VIPCSVYCNGEY 120
Query: 279 GIPEGLIYSFPVTCEKGEWSIVKGLKVDEFSRAKMDATAEELAEEK 324
G+ + I P V L+++E + + + +++
Sbjct: 121 GLKDMFIGL-PAVIGGAGIERVIELELNEEEKKQFQKSVDDVMALN 165
|
| >d1ldna2 d.162.1.1 (A:163-330) Lactate dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]} Length = 168 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: LDH C-terminal domain-like superfamily: LDH C-terminal domain-like family: Lactate & malate dehydrogenases, C-terminal domain domain: Lactate dehydrogenase species: Bacillus stearothermophilus [TaxId: 1422]
Score = 105 bits (262), Expect = 4e-28
Identities = 27/173 (15%), Positives = 52/173 (30%), Gaps = 5/173 (2%)
Query: 157 TRLDHNRAMGQISERLKVHVSDVKNVIIWGNHSSTQYPDVNHATVTTSKGEKPVREAVAD 216
T LD R + E V +V + I G H T+ P + A + K V +
Sbjct: 1 TILDTARFRFLLGEYFSVAPQNV-HAYIIGEHGDTELPVWSQAYIGVMPIRKLVESKGEE 59
Query: 217 DNWLNTEFITTVQQRGAAIIKARKLSSALSAASSACDHIRDWVLGTPKGTWVSMGVYSDG 276
+ E I + A I +K ++ A R +
Sbjct: 60 AQK-DLERIFVNVRDAAYQIIEKKGATYYGIAMGLARVTRAI---LHNENAILTVSAYLD 115
Query: 277 SYGIPEGLIYSFPVTCEKGEWSIVKGLKVDEFSRAKMDATAEELAEEKTLAYS 329
+ P + V +++++ + + +A L A++
Sbjct: 116 GLYGERDVYIGVPAVINRNGIREVIEIELNDDEKNRFHHSAATLKSVLARAFT 168
|
| >d1hyea2 d.162.1.1 (A:146-313) MJ0490, lactate/malate dehydrogenase {Archaeon Methanococcus jannaschii [TaxId: 2190]} Length = 168 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: LDH C-terminal domain-like superfamily: LDH C-terminal domain-like family: Lactate & malate dehydrogenases, C-terminal domain domain: MJ0490, lactate/malate dehydrogenase species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Score = 103 bits (256), Expect = 3e-27
Identities = 30/168 (17%), Positives = 60/168 (35%), Gaps = 8/168 (4%)
Query: 157 TRLDHNRAMGQISERLKVHVSDVKNVIIWGNHSSTQYPDVNHATVTTSKGEKPVREAVAD 216
T LD R I++ VH+ +V I G H + P ++ ++ +K
Sbjct: 3 THLDSLRFKVAIAKFFGVHIDEV-RTRIIGEHGDSMVPLLSATSIGGIPIQKFE-----R 56
Query: 217 DNWLNTEFITTVQQRGAAIIKARKLSSALSAASSACDHIRDWVLGTPKGTWVSMGVYSDG 276
L + I + I K S A++ + +R V + +++ Y DG
Sbjct: 57 FKELPIDEIIEDVKTKGEQIIRLKGGSEFGPAAAILNVVRCIV--NNEKRLLTLSAYVDG 114
Query: 277 SYGIPEGLIYSFPVTCEKGEWSIVKGLKVDEFSRAKMDATAEELAEEK 324
+ + PV + V +++D+ +AE + +
Sbjct: 115 EFDGIRDVCIGVPVKIGRDGIEEVVSIELDKDEIIAFRKSAEIIKKYC 162
|
| >d1ez4a2 d.162.1.1 (A:163-334) Lactate dehydrogenase {Lactobacillus pentosus [TaxId: 1589]} Length = 171 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: LDH C-terminal domain-like superfamily: LDH C-terminal domain-like family: Lactate & malate dehydrogenases, C-terminal domain domain: Lactate dehydrogenase species: Lactobacillus pentosus [TaxId: 1589]
Score = 102 bits (256), Expect = 3e-27
Identities = 28/167 (16%), Positives = 52/167 (31%), Gaps = 6/167 (3%)
Query: 157 TRLDHNRAMGQISERLKVHVSDVKNVIIWGNHSSTQYPDVNHATVTTSKGEKPVREAVAD 216
T LD +R + ++ V V + I G H +++ + AT G +PVR+ +
Sbjct: 1 TSLDSSRLRVALGKQFNVDPRSV-DAYIMGEHGDSEFAAYSTAT----IGTRPVRDVAKE 55
Query: 217 DNWLNTEFITTVQQRGAAIIKARKLSSALSAASSACDHIRDWVLGTPKGTWVSMGVYSDG 276
+ + L A + + + +G Y DG
Sbjct: 56 QGVSDDDLAKLEDGVRNKAYDIINLKGATFYGIGTALMRISKAILRDENAVLPVGAYMDG 115
Query: 277 SYGIPEGLIYSFPVTCEKGEWSIVKGLKVDEFSRAKMDATAEELAEE 323
YG+ + P + + KM +A L +
Sbjct: 116 QYGL-NDIYIGTPAIIGGTGLKQIIESPLSADELKKMQDSAATLKKV 161
|
| >d1llca2 d.162.1.1 (A:165-334) Lactate dehydrogenase {Lactobacillus casei [TaxId: 1582]} Length = 172 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: LDH C-terminal domain-like superfamily: LDH C-terminal domain-like family: Lactate & malate dehydrogenases, C-terminal domain domain: Lactate dehydrogenase species: Lactobacillus casei [TaxId: 1582]
Score = 101 bits (253), Expect = 1e-26
Identities = 36/167 (21%), Positives = 62/167 (37%), Gaps = 5/167 (2%)
Query: 157 TRLDHNRAMGQISERLKVHVSDVKNVIIWGNHSSTQYPDVNHATVTTSKGEKPVREAVAD 216
T LD R I+E + V V + I G H T++P +HA + + V+
Sbjct: 1 TSLDTARFRQSIAEMVNVDARSV-HAYIMGEHGDTEFPVWSHANIGGVTIAEWVKAHPEI 59
Query: 217 DNWLNTEFITTVQQRGAAIIKARKLSSALSAASSACDHIRDWVLGTPKGTWVSMGVYSDG 276
+ V+ IIK L A + + + + + VY DG
Sbjct: 60 KEDKLVKMFEDVRDAAYEIIK---LKGATFYGIATALARISKAILNDENAVLPLSVYMDG 116
Query: 277 SYGIPEGLIYSFPVTCEKGEWSIVKGLKVDEFSRAKMDATAEELAEE 323
YGI + I + V G +I+ + + + M +A +L +
Sbjct: 117 QYGINDLYIGTPAVINRNGIQNIL-EIPLTDHEEESMQKSASQLKKV 162
|
| >d1a5za2 d.162.1.1 (A:164-333) Lactate dehydrogenase {Thermotoga maritima [TaxId: 2336]} Length = 172 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: LDH C-terminal domain-like superfamily: LDH C-terminal domain-like family: Lactate & malate dehydrogenases, C-terminal domain domain: Lactate dehydrogenase species: Thermotoga maritima [TaxId: 2336]
Score = 101 bits (251), Expect = 2e-26
Identities = 32/167 (19%), Positives = 55/167 (32%), Gaps = 5/167 (2%)
Query: 157 TRLDHNRAMGQISERLKVHVSDVKNVIIWGNHSSTQYPDVNHATVTTSKGEKPVREAVAD 216
T LD R I++ V +V + G H ++ P + A + + +
Sbjct: 2 TVLDTARLRTLIAQHCGFSPRSV-HVYVIGEHGDSEVPVWSGAMIGGIPLQNMCQVCQKC 60
Query: 217 DNWLNTEFITTVQQRGAAIIKARKLSSALSAASSACDHIRDWVLGTPKGTWVSMGVYSDG 276
D+ + F + R A I RK ++ + A + D + V
Sbjct: 61 DSKILENFAEKTK-RAAYEIIERKGATHYAIALAVADIVESI---FFDEKRVLTLSVYLE 116
Query: 277 SYGIPEGLIYSFPVTCEKGEWSIVKGLKVDEFSRAKMDATAEELAEE 323
Y + L S PVT K + L ++E +A L
Sbjct: 117 DYLGVKDLCISVPVTLGKHGVERILELNLNEEELEAFRKSASILKNA 163
|
| >d2cmda1 c.2.1.5 (A:1-145) Malate dehydrogenase {Escherichia coli [TaxId: 562]} Length = 145 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Malate dehydrogenase species: Escherichia coli [TaxId: 562]
Score = 98.2 bits (244), Expect = 1e-25
Identities = 41/161 (25%), Positives = 65/161 (40%), Gaps = 16/161 (9%)
Query: 6 LRVLVTGAAGQIGYALVPMIARGIMLGPDQPVILHMLDIEPAAEALNGVKMELIDAAFPL 65
++V V GAAG IG AL ++ + G + L + DI P GV ++L +
Sbjct: 1 MKVAVLGAAGGIGQALALLLKTQLPSGSE----LSLYDIAPVTP---GVAVDLSHIPTAV 53
Query: 66 LKGVVATTDVVEACKDVNIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEKHAAPNC 125
+ D A + ++ ++ G RK GM+R D+ + N I K + K P
Sbjct: 54 KIKGFSGEDATPALEGADVVLISAGVRRKPGMDRSDLFNVNAGIVKNLVQQVAKT-CPKA 112
Query: 126 KVLVVANPANTNALILKEFAPSIPAKNITCLTRLDHNRAMG 166
+ ++ NP NT I E D N+ G
Sbjct: 113 CIGIITNPVNTTVAIAAEVLKK--------AGVYDKNKLFG 145
|
| >d1hyha2 d.162.1.1 (A:167-329) L-2-hydroxyisocapronate dehydrogenase, L-HICDH {Lactobacillus confusus [TaxId: 1583]} Length = 163 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: LDH C-terminal domain-like superfamily: LDH C-terminal domain-like family: Lactate & malate dehydrogenases, C-terminal domain domain: L-2-hydroxyisocapronate dehydrogenase, L-HICDH species: Lactobacillus confusus [TaxId: 1583]
Score = 96.5 bits (239), Expect = 6e-25
Identities = 23/167 (13%), Positives = 52/167 (31%), Gaps = 13/167 (7%)
Query: 157 TRLDHNRAMGQISERLKVHVSDVKNVIIWGNHSSTQYPDVNHATVTTSKGEKPVREAVAD 216
T LD R + E + V + G H ++Q+ + V +AD
Sbjct: 2 TLLDTARMQRAVGEAFDLDPRSV-SGYNLGEHGNSQFVAWSTVRVM-----GQPIVTLAD 55
Query: 217 DNWLNTEFITTVQQRGAAIIKARKLSSALSAASSACDHIRDWVLGTPKGTWVSMGVYSDG 276
++ I ++G + K ++ A+SA + +
Sbjct: 56 AGDIDLAAIEEEARKGGFTVLNGKGYTSYGVATSAIRIAKAV-------MADAHAELVVS 108
Query: 277 SYGIPEGLIYSFPVTCEKGEWSIVKGLKVDEFSRAKMDATAEELAEE 323
+ G+ S+P + L + + K+ + + + +
Sbjct: 109 NRRDDMGMYLSYPAIIGRDGVLAETTLDLTTDEQEKLLQSRDYIQQR 155
|
| >d1t2da2 d.162.1.1 (A:151-315) Lactate dehydrogenase {Malaria parasite (Plasmodium falciparum) [TaxId: 5833]} Length = 165 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: LDH C-terminal domain-like superfamily: LDH C-terminal domain-like family: Lactate & malate dehydrogenases, C-terminal domain domain: Lactate dehydrogenase species: Malaria parasite (Plasmodium falciparum) [TaxId: 5833]
Score = 93.7 bits (232), Expect = 9e-24
Identities = 34/169 (20%), Positives = 58/169 (34%), Gaps = 6/169 (3%)
Query: 159 LDHNRAMGQISERLKVHVSDVKNVIIWGNHSSTQYPDVNHATVTTSKGEKPVREAVADDN 218
LD +R IS++L V DV I+ G H + + TV ++ + + D
Sbjct: 3 LDTSRLKYYISQKLNVCPRDVNAHIV-GAHGNKMVLLKRYITVGGIPLQEFINNKLISDA 61
Query: 219 WLNTEFITTVQQRGAAIIKARKLSSALSAASSACDHIRDWVLGTPKGTWVSMGVYSDGSY 278
L I A I S ++ A++ + ++ + +G Y
Sbjct: 62 ELEA--IFDRTVNTALEIVNLHASPYVAPAAAIIEMAESYL--KDLKKVLICSTLLEGQY 117
Query: 279 GIPEGLIYSFPVTCEKGEWSIVKGLKVDEFSRAKMDATAEELAEEKTLA 327
+ PV V L+++ +AK D E K LA
Sbjct: 118 -GHSDIFGGTPVVLGANGVEQVIELQLNSEEKAKFDEAIAETKRMKALA 165
|
| >d1mlda1 c.2.1.5 (A:1-144) Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 9823]} Length = 144 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Malate dehydrogenase species: Pig (Sus scrofa) [TaxId: 9823]
Score = 90.8 bits (225), Expect = 6e-23
Identities = 37/161 (22%), Positives = 64/161 (39%), Gaps = 19/161 (11%)
Query: 7 RVLVTGAAGQIGYALVPMIARGIMLGPDQPVILHMLDIEPAAEALNGVKMELIDAAFPL- 65
+V V GA+G IG L ++ ++ L + DI GV +L
Sbjct: 2 KVAVLGASGGIGQPLSLLLKNSPLVSR-----LTLYDIAHT----PGVAADLSHIETRAT 52
Query: 66 LKGVVATTDVVEACKDVNIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEKHAAPNC 125
+KG + + + K ++ V+ G PRK GM R D+ + N +I +A P+
Sbjct: 53 VKGYLGPEQLPDCLKGCDVVVIPAGVPRKPGMTRDDLFNTNATIVATLTAAC-AQHCPDA 111
Query: 126 KVLVVANPANTNALILKEFAPSIPAKNITCLTRLDHNRAMG 166
+ +++NP N+ I E + N+ G
Sbjct: 112 MICIISNPVNSTIPITAEVFKK--------HGVYNPNKIFG 144
|
| >d1o6za2 d.162.1.1 (A:163-330) Malate dehydrogenase {Archaeon Haloarcula marismortui [TaxId: 2238]} Length = 161 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: LDH C-terminal domain-like superfamily: LDH C-terminal domain-like family: Lactate & malate dehydrogenases, C-terminal domain domain: Malate dehydrogenase species: Archaeon Haloarcula marismortui [TaxId: 2238]
Score = 88.7 bits (219), Expect = 6e-22
Identities = 30/167 (17%), Positives = 57/167 (34%), Gaps = 13/167 (7%)
Query: 157 TRLDHNRAMGQISERLKVHVSDVKNVIIWGNHSSTQYPDVNHATVTTSKGEKPVREAVAD 216
RLD R +SE V +V I G H Q P + +V + +
Sbjct: 3 GRLDSARFRYVLSEEFDAPVQNV-EGTILGEHGDAQVPVFSKVSVDGTDP---------E 52
Query: 217 DNWLNTEFITTVQQRGAAIIKARKLSSALSAASSACDHIRDWVLGTPKGTWVSMGVYSDG 276
+ E + Q A + RK ++ A + + T + S+ +
Sbjct: 53 FSGDEKEQLLGDLQESAMDVIERKGATEWGPARGVAHMVEAILHDTGEVLPASVKLEG-- 110
Query: 277 SYGIPEGLIYSFPVTCEKGEWSIVKGLKVDEFSRAKMDATAEELAEE 323
E + PV+ + +D++ + M AE+L+++
Sbjct: 111 -EFGHEDTAFGVPVSLGSNGVEEIVEWDLDDYEQDLMADAAEKLSDQ 156
|
| >d1o6za1 c.2.1.5 (A:22-162) Malate dehydrogenase {Archaeon Haloarcula marismortui [TaxId: 2238]} Length = 142 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Malate dehydrogenase species: Archaeon Haloarcula marismortui [TaxId: 2238]
Score = 81.6 bits (201), Expect = 1e-19
Identities = 33/160 (20%), Positives = 53/160 (33%), Gaps = 19/160 (11%)
Query: 7 RVLVTGAAGQIGYALVPMIARGIMLGPDQPVILHMLDIEPAAEALNGVKMELIDAAFPLL 66
+V V GAAG +G A IA D + +DI + G +
Sbjct: 2 KVSVVGAAGTVGAAAGYNIALR-----DIADEVVFVDIPDKEDDTVGQAADTNHGI-AYD 55
Query: 67 KGVVATTDVVEACKDVNIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEKHAAPNCK 126
E ++ V+ G PR+ G R D+ N I + S+L++H +
Sbjct: 56 SNTRVRQGGYEDTAGSDVVVITAGIPRQPGQTRIDLAGDNAPIMEDIQSSLDEH-NDDYI 114
Query: 127 VLVVANPANTNALILKEFAPSIPAKNITCLTRLDHNRAMG 166
L +NP + L E + +G
Sbjct: 115 SLTTSNPVDLLNRHLYE------------AGDRSREQVIG 142
|
| >d1guza1 c.2.1.5 (A:1-142) Malate dehydrogenase {Chlorobium vibrioforme [TaxId: 1098]} Length = 142 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Malate dehydrogenase species: Chlorobium vibrioforme [TaxId: 1098]
Score = 77.8 bits (191), Expect = 3e-18
Identities = 34/140 (24%), Positives = 63/140 (45%), Gaps = 8/140 (5%)
Query: 6 LRVLVTGAAGQIGYALVPMIARGIMLGPDQPVILHMLDIEPAAEALNGVKMELIDAAFPL 65
+++ V GA G +G +A + + V+L +++ P +AL+ M
Sbjct: 1 MKITVIGA-GNVGATTAFRLAEKQL--ARELVLLDVVEGIPQGKALD---MYESGPVGLF 54
Query: 66 LKGVVATTDVVEACKDVNIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEKHAAPNC 125
V + D + +I ++ G PRK GM R+D++ KN I K + KH + N
Sbjct: 55 DTKVTGSNDY-ADTANSDIVIITAGLPRKPGMTREDLLMKNAGIVKEVTDNIMKH-SKNP 112
Query: 126 KVLVVANPANTNALILKEFA 145
++VV+NP + + +
Sbjct: 113 IIIVVSNPLDIMTHVAWVRS 132
|
| >d1hyea1 c.2.1.5 (A:1-145) MJ0490, lactate/malate dehydrogenase {Archaeon Methanococcus jannaschii [TaxId: 2190]} Length = 145 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: MJ0490, lactate/malate dehydrogenase species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Score = 76.4 bits (187), Expect = 1e-17
Identities = 32/164 (19%), Positives = 68/164 (41%), Gaps = 22/164 (13%)
Query: 6 LRVLVTGAAGQIGYALVPMIARGIMLGPDQPVILHMLDIEPAAEALNGVKMELIDAAFPL 65
++V + GA+G++G A ++A+ + L ++ E + L G++ ++ DA
Sbjct: 1 MKVTIIGASGRVGSATALLLAKEPFMKD-----LVLIGREHSINKLEGLREDIYDALAGT 55
Query: 66 L---KGVVATTDVVEACKDVNIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEKHAA 122
V + + + + ++ ++ G PRKEGM R D+ N I A + +
Sbjct: 56 RSDANIYVESDENLRIIDESDVVIITSGVPRKEGMSRMDLAKTNAKIVGKYAKKIAEIC- 114
Query: 123 PNCKVLVVANPANTNALILKEFAPSIPAKNITCLTRLDHNRAMG 166
+ K+ V+ NP + ++ + N+ G
Sbjct: 115 -DTKIFVITNPVDVMTYKALVD------------SKFERNQVFG 145
|
| >d1llda1 c.2.1.5 (A:7-149) Lactate dehydrogenase {Bifidobacterium longum, strain am101-2 [TaxId: 216816]} Length = 143 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Lactate dehydrogenase species: Bifidobacterium longum, strain am101-2 [TaxId: 216816]
Score = 72.7 bits (178), Expect = 3e-16
Identities = 35/162 (21%), Positives = 68/162 (41%), Gaps = 21/162 (12%)
Query: 5 PLRVLVTGAAGQIGYALVPMIARGIMLGPDQPVILHMLDIEPAAEALNGVKMELIDAAFP 64
P ++ V GA G +G L A+ + + ++ + A E + +++ +
Sbjct: 1 PTKLAVIGA-GAVGSTLAFAAAQ-------RGIAREIVLEDIAKERVEAEVLDMQHGSSF 52
Query: 65 LLKGVVATTDVVEACKDVNIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEKHAAPN 124
+ +D E C+D ++ V+ G +K G R +++ V+I KA L K A PN
Sbjct: 53 YPTVSIDGSDDPEICRDADMVVITAGPRQKPGQSRLELVGATVNILKAIMPNLVKVA-PN 111
Query: 125 CKVLVVANPANTNALILKEFAPSIPAKNITCLTRLDHNRAMG 166
+++ NP + + ++ LT L N+ G
Sbjct: 112 AIYMLITNPVDIATHVAQK------------LTGLPENQIFG 141
|
| >d1a5za1 c.2.1.5 (A:22-163) Lactate dehydrogenase {Thermotoga maritima [TaxId: 2336]} Length = 140 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Lactate dehydrogenase species: Thermotoga maritima [TaxId: 2336]
Score = 68.6 bits (167), Expect = 7e-15
Identities = 28/161 (17%), Positives = 61/161 (37%), Gaps = 22/161 (13%)
Query: 6 LRVLVTGAAGQIGYALVPMIARGIMLGPDQPVILHMLDIEPAAEALNGVKMELIDAAFPL 65
+++ + G G++G + + + M+ I+ + G ++LI P
Sbjct: 1 MKIGIVGL-GRVGSSTAFALLM-------KGFAREMVLIDVDKKRAEGDALDLIHGT-PF 51
Query: 66 LKGVVATTDVVEACKDVNIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEKHAAPNC 125
+ K ++ ++ G P+K G R ++ +N + K A + K+ AP+
Sbjct: 52 TRRANIYAGDYADLKGSDVVIVAAGVPQKPGETRLQLLGRNARVMKEIARNVSKY-APDS 110
Query: 126 KVLVVANPANTNALILKEFAPSIPAKNITCLTRLDHNRAMG 166
V+VV NP + + + +D + G
Sbjct: 111 IVIVVTNPVDVLTYFFLK------------ESGMDPRKVFG 139
|
| >d1ojua1 c.2.1.5 (A:22-163) Malate dehydrogenase {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} Length = 142 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Malate dehydrogenase species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]
Score = 63.9 bits (155), Expect = 3e-13
Identities = 36/141 (25%), Positives = 57/141 (40%), Gaps = 10/141 (7%)
Query: 6 LRVLVTGAAGQIGYALVPMIARGIMLGPDQPVILHMLDIEPAAEALNGVKMELIDAAFPL 65
+++ GA G++G + + + ++DI + G M+L AA +
Sbjct: 1 MKLGFVGA-GRVGSTSAFTCLLNLDVDE-----IALVDIAE--DLAVGEAMDLAHAAAGI 52
Query: 66 LKGVVAT-TDVVEACKDVNIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEKHAAPN 124
K K I V+ G RK GM R D+ KN I K A + AP
Sbjct: 53 DKYPKIVGGADYSLLKGSEIIVVTAGLARKPGMTRLDLAHKNAGIIKDIAKKI-VENAPE 111
Query: 125 CKVLVVANPANTNALILKEFA 145
K+LVV NP + I+ + +
Sbjct: 112 SKILVVTNPMDVMTYIMWKES 132
|
| >d1ez4a1 c.2.1.5 (A:16-162) Lactate dehydrogenase {Lactobacillus pentosus [TaxId: 1589]} Length = 146 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Lactate dehydrogenase species: Lactobacillus pentosus [TaxId: 1589]
Score = 62.3 bits (151), Expect = 1e-12
Identities = 30/166 (18%), Positives = 58/166 (34%), Gaps = 23/166 (13%)
Query: 1 MAKNPLRVLVTGAAGQIGYALVPMIARGIMLGPDQPVILHMLDIEPAAEALNGVKMELID 60
M + +V++ G G +G + +A+ I I + ++
Sbjct: 2 MPNHQ-KVVLVGD-GAVGSSYAFAMAQQ--------GIAEEFVIVDVVKDRTKGDALDLE 51
Query: 61 AAFPLLKGVVATTDVVEACKDVNIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEKH 120
A + CKD ++ V+ G P+K G R D+++KN++I + +
Sbjct: 52 DAQAFTAPKKIYSGEYSDCKDADLVVITAGAPQKPGESRLDLVNKNLNILSSIVKPVVDS 111
Query: 121 AAPNCKVLVVANPANTNALILKEFAPSIPAKNITCLTRLDHNRAMG 166
+ LV ANP + +F + R +G
Sbjct: 112 G-FDGIFLVAANPVDILTYATWKF------------SGFPKERVIG 144
|
| >d1hyha1 c.2.1.5 (A:21-166) L-2-hydroxyisocapronate dehydrogenase, L-HICDH {Lactobacillus confusus [TaxId: 1583]} Length = 146 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: L-2-hydroxyisocapronate dehydrogenase, L-HICDH species: Lactobacillus confusus [TaxId: 1583]
Score = 61.3 bits (148), Expect = 3e-12
Identities = 21/164 (12%), Positives = 58/164 (35%), Gaps = 25/164 (15%)
Query: 7 RVLVTGAAGQIGYALVPMIARGIMLGPDQPVILHMLDIEPAAEALNGVKMELIDAAFPLL 66
++ + G G +G A+ + Q V + I+ + +++ DA L
Sbjct: 3 KIGIIGL-GNVGAAVAHGLIA-------QGVADDYVFIDANEAKVKADQIDFQDAMANLE 54
Query: 67 KGVVATTDVVEACKDVNIAVMVGGFPR----KEGMERKDVMSKNVSIYKAQASALEKHAA 122
+ A D ++ + G + +R + S+ ++ + L++
Sbjct: 55 AHGNIVINDWAALADADVVISTLGNIKLQQDNPTGDRFAELKFTSSMVQSVGTNLKESG- 113
Query: 123 PNCKVLVVANPANTNALILKEFAPSIPAKNITCLTRLDHNRAMG 166
+ ++V++NP + + + +T ++ +G
Sbjct: 114 FHGVLVVISNPVDVITALFQH------------VTGFPAHKVIG 145
|
| >d1ldna1 c.2.1.5 (A:15-162) Lactate dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]} Length = 148 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Lactate dehydrogenase species: Bacillus stearothermophilus [TaxId: 1422]
Score = 59.3 bits (143), Expect = 2e-11
Identities = 36/167 (21%), Positives = 64/167 (38%), Gaps = 22/167 (13%)
Query: 1 MAKN-PLRVLVTGAAGQIGYALVPMIARGIMLGPDQPVILHMLDIEPAAEALNGVKMELI 59
M N RV+V GA G +G + V + Q + ++ I+ G M+
Sbjct: 1 MKNNGGARVVVIGA-GFVGASYVFALMN-------QGIADEIVLIDANESKAIGDAMDFN 52
Query: 60 DAAFPLLKGVVATTDVVEACKDVNIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEK 119
K V + C+D ++ V+ G +K G R D++ KN++I+++ ++
Sbjct: 53 HGKVFAPKPVDIWHGDYDDCRDADLVVICAGANQKPGETRLDLVDKNIAIFRSIVESVMA 112
Query: 120 HAAPNCKVLVVANPANTNALILKEFAPSIPAKNITCLTRLDHNRAMG 166
LV NP + +F + L H R +G
Sbjct: 113 S-GFQGLFLVATNPVDILTYATWKF------------SGLPHERVIG 146
|
| >d1y6ja1 c.2.1.5 (A:7-148) Lactate dehydrogenase {Clostridium thermocellum [TaxId: 1515]} Length = 142 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Lactate dehydrogenase species: Clostridium thermocellum [TaxId: 1515]
Score = 55.8 bits (134), Expect = 2e-10
Identities = 33/162 (20%), Positives = 63/162 (38%), Gaps = 26/162 (16%)
Query: 7 RVLVTGAAGQIGYALVPMIARGIMLGPDQPVI--LHMLDIEPAAEALNGVKMELIDAAFP 64
+V + GA G +G + +A + L ++D+ E G M++ P
Sbjct: 3 KVAIIGA-GFVGASAAFTMAL-------RQTANELVLIDV--FKEKAIGEAMDINHGL-P 51
Query: 65 LLKGVVATTDVVEACKDVNIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEKHAAPN 124
+ + KD ++ V+ G RK G R D+ KNV I K + +
Sbjct: 52 FMGQMSLYAGDYSDVKDCDVIVVTAGANRKPGETRLDLAKKNVMIAKEVTQNI-MKYYNH 110
Query: 125 CKVLVVANPANTNALILKEFAPSIPAKNITCLTRLDHNRAMG 166
+LVV+NP + +++++ + L + +G
Sbjct: 111 GVILVVSNPVDIITYMIQKW------------SGLPVGKVIG 140
|
| >d2ldxa1 c.2.1.5 (A:1-159) Lactate dehydrogenase {Mouse (Mus musculus) [TaxId: 10090]} Length = 159 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Lactate dehydrogenase species: Mouse (Mus musculus) [TaxId: 10090]
Score = 55.8 bits (134), Expect = 4e-10
Identities = 30/160 (18%), Positives = 61/160 (38%), Gaps = 21/160 (13%)
Query: 7 RVLVTGAAGQIGYALVPMIARGIMLGPDQPVILHMLDIEPAAEALNGVKMELIDAAFPLL 66
++ V G G +G A I + G + L ++ + L G ++L + L
Sbjct: 21 KITVVGV-GDVGMACAISIL---LKGLADELAL----VDADTDKLRGEALDLQHGSLFLS 72
Query: 67 KGVVATTDVVEACKDVNIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEKHAAPNCK 126
+ + + ++ G G R D++ +NV+I KA +P+CK
Sbjct: 73 TPKIVFGKDYNVSANSKLVIITAGARMVSGQTRLDLLQRNVAIMKAIVPG-VIQNSPDCK 131
Query: 127 VLVVANPANTNALILKEFAPSIPAKNITCLTRLDHNRAMG 166
++VV NP + ++ + ++ R +G
Sbjct: 132 IIVVTNPVDILTYVVWK------------ISGFPVGRVIG 159
|
| >d1uxja1 c.2.1.5 (A:2-143) Malate dehydrogenase {Chloroflexus aurantiacus [TaxId: 1108]} Length = 142 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Malate dehydrogenase species: Chloroflexus aurantiacus [TaxId: 1108]
Score = 55.1 bits (132), Expect = 4e-10
Identities = 33/162 (20%), Positives = 66/162 (40%), Gaps = 23/162 (14%)
Query: 7 RVLVTGAAGQIGYALVPMIARGIMLGPDQPVILHMLDIEPAAEALNGVKMELIDAAFPLL 66
++ + GA G +G +A + + ++ ++ G ++L +A+
Sbjct: 3 KISIIGA-GFVGSTTAHWLAA-------KELG-DIVLLDIVEGVPQGKALDLYEASPIEG 53
Query: 67 KGV-VATTDVVEACKDVNIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEKHAAPNC 125
V V T+ + ++ V+ G PRK GM R+D++ N I +A S +PN
Sbjct: 54 FDVRVTGTNNYADTANSDVIVVTSGAPRKPGMSREDLIKVNADITRACISQ-AAPLSPNA 112
Query: 126 KVLVVANPANTNALILKEFAPSIPAKNITCLTRLDHNRAMGQ 167
+++V NP + + E ++ R +GQ
Sbjct: 113 VIIMVNNPLDAMTYLAAE------------VSGFPKERVIGQ 142
|
| >d1i0za1 c.2.1.5 (A:1-160) Lactate dehydrogenase {Human (Homo sapiens), heart isoform (H chain) [TaxId: 9606]} Length = 160 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Lactate dehydrogenase species: Human (Homo sapiens), heart isoform (H chain) [TaxId: 9606]
Score = 55.0 bits (132), Expect = 7e-10
Identities = 32/160 (20%), Positives = 68/160 (42%), Gaps = 21/160 (13%)
Query: 7 RVLVTGAAGQIGYALVPMIARGIMLGPDQPVILHMLDIEPAAEALNGVKMELIDAAFPLL 66
++ V G GQ+G A I + + + ++ + L G M+L + L
Sbjct: 22 KITVVGV-GQVGMACAISILG-------KSLADELALVDVLEDKLKGEMMDLQHGSLFLQ 73
Query: 67 KGVVATTDVVEACKDVNIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEKHAAPNCK 126
+ + I V+ G ++EG R +++ +NV+++K + K+ +P+C
Sbjct: 74 TPKIVADKDYSVTANSKIVVVTAGVRQQEGESRLNLVQRNVNVFKFIIPQIVKY-SPDCI 132
Query: 127 VLVVANPANTNALILKEFAPSIPAKNITCLTRLDHNRAMG 166
++VV+NP + + + L+ L +R +G
Sbjct: 133 IIVVSNPVDILTYVTWK------------LSGLPKHRVIG 160
|
| >d1up7a1 c.2.1.5 (A:1-162) 6-phospho-beta-glucosidase {Thermotoga maritima [TaxId: 2336]} Length = 162 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: 6-phospho-beta-glucosidase species: Thermotoga maritima [TaxId: 2336]
Score = 55.1 bits (132), Expect = 7e-10
Identities = 14/155 (9%), Positives = 41/155 (26%), Gaps = 26/155 (16%)
Query: 14 AGQIGYALVPMIARGIMLGPDQPVI--LHMLDIEPAAEALNGVKMELIDAAFPLLKGVVA 71
G P + +G++ + I + DI+ + + ++ + V+
Sbjct: 8 GGSSY---TPELVKGLLDISEDVRIDEVIFYDIDEEKQ---KIVVDFVKRLVKDRFKVLI 61
Query: 72 TTDVVEACKDVNIAVMVGGFPRKEGMERKDVMSKNVSIYKAQAS---------------- 115
+ A D + +G E + + + + +
Sbjct: 62 SDTFEGAVVDAKYVIFQFRPGGLKGRENDEGIPLKYGLIGQETTGVGGFSAALRAFPIVE 121
Query: 116 --ALEKHAAPNCKVLVVANPANTNALILKEFAPSI 148
N ++ NP+ ++ +
Sbjct: 122 EYVDTVRKTSNATIVNFTNPSGHITEFVRNYLEYE 156
|
| >d1u8xx1 c.2.1.5 (X:3-169) Maltose-6'-phosphate glucosidase GlvA {Bacillus subtilis [TaxId: 1423]} Length = 167 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Maltose-6'-phosphate glucosidase GlvA species: Bacillus subtilis [TaxId: 1423]
Score = 51.2 bits (122), Expect = 2e-08
Identities = 24/166 (14%), Positives = 51/166 (30%), Gaps = 23/166 (13%)
Query: 3 KNPLRVLVTGAAGQIGYALVPMIARGIMLGPDQPVILHMLDIEPAAEALNGVKMELIDAA 62
K +++ G +V M+ + P + + L+ D + + ++
Sbjct: 1 KKSFSIVIAGGGSTFTPGIVLMLLDHLEEFPIRKLKLY--DNDKERQDRIAGACDVFIRE 58
Query: 63 FPLLKGVVATTDVVEACKDVNIAVMVGGFPRKEGMERKDVMSKN---------------- 106
ATTD EA DV+ + + + +
Sbjct: 59 KAPDIEFAATTDPEEAFTDVDFVMAHIRVGKYAMRALDEQIPLKYGVVGQETCGPGGIAY 118
Query: 107 ----VSIYKAQASALEKHAAPNCKVLVVANPANTNALILKEFAPSI 148
+ +EK++ P+ +L +NPA A + P+
Sbjct: 119 GMRSIGGVLEILDYMEKYS-PDAWMLNYSNPAAIVAEATRRLRPNS 163
|
| >d1pzga1 c.2.1.5 (A:14-163) Lactate dehydrogenase {Toxoplasma gondii [TaxId: 5811]} Length = 154 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Lactate dehydrogenase species: Toxoplasma gondii [TaxId: 5811]
Score = 50.5 bits (120), Expect = 2e-08
Identities = 25/171 (14%), Positives = 57/171 (33%), Gaps = 25/171 (14%)
Query: 1 MAKNPLRVLVTGAAGQIGYALVPMIARGIMLGPDQPVILHMLDIEPAAEALNGVKMELID 60
+ + +V + G+ G IG + + A + + + D+ + + +
Sbjct: 3 LVQRRKKVAMIGS-GMIGGTMGYLCALR------ELADVVLYDVVKGMPEGKALDLSHVT 55
Query: 61 AAFPLLKGVVATTDVVEACKDVNIAVMVGGFPRKEG-----MERKDVMSKNVSIYKAQAS 115
+ V A A + ++ G + G R D++ N I +
Sbjct: 56 SVVDTNVSVRAEYSYEAALTGADCVIVTAGLTKVPGKPDSEWSRNDLLPFNSKIIREIGQ 115
Query: 116 ALEKHAAPNCKVLVVANPANTNALILKEFAPSIPAKNITCLTRLDHNRAMG 166
++K+ P ++VV NP + ++ E + + N G
Sbjct: 116 NIKKY-CPKTFIIVVTNPLDCMVKVMCE------------ASGVPTNMICG 153
|
| >d1t2da1 c.2.1.5 (A:1-150) Lactate dehydrogenase {Malaria parasite (Plasmodium falciparum) [TaxId: 5833]} Length = 150 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Lactate dehydrogenase species: Malaria parasite (Plasmodium falciparum) [TaxId: 5833]
Score = 44.7 bits (105), Expect = 2e-06
Identities = 25/165 (15%), Positives = 61/165 (36%), Gaps = 26/165 (15%)
Query: 7 RVLVTGAAGQIGYALVPMIARGIMLGPDQPVILHMLDIEPAAEALNGVKMELIDAAFPLL 66
++++ G+ G IG + +I + + + + DI + +
Sbjct: 5 KIVLVGS-GMIGGVMATLIVQKNL------GDVVLFDIVKNMPHGKALDTSHTNV-MAYS 56
Query: 67 KGVVATTDVVEACKDVNIAVMVGGFPRKEGME-----RKDVMSKNVSIYKAQASALEKHA 121
V+ ++ + ++ ++ GF + G R D++ N I ++K+
Sbjct: 57 NCKVSGSNTYDDLAGADVVIVTAGFTKAPGKSDKEWNRDDLLPLNNKIMIEIGGHIKKNC 116
Query: 122 APNCKVLVVANPANTNALILKEFAPSIPAKNITCLTRLDHNRAMG 166
PN ++VV NP + +L + + + N+ +G
Sbjct: 117 -PNAFIIVVTNPVDVMVQLLHQ------------HSGVPKNKIIG 148
|
| >d1s6ya1 c.2.1.5 (A:4-172) 6-phospho-beta-glucosidase {Bacillus stearothermophilus [TaxId: 1422]} Length = 169 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: 6-phospho-beta-glucosidase species: Bacillus stearothermophilus [TaxId: 1422]
Score = 43.5 bits (102), Expect = 6e-06
Identities = 18/157 (11%), Positives = 40/157 (25%), Gaps = 24/157 (15%)
Query: 14 AGQIGYALVPMIARGIMLGPDQPVI-LHMLDIEPAAEALNGVKM--ELIDAAFPLLKGVV 70
G + + I + PV L ++DI E L V + + + +
Sbjct: 9 GGSSYTPEL--VEGLIKRYHELPVGELWLVDIPEGKEKLEIVGALAKRMVEKAGVPIEIH 66
Query: 71 ATTDVVEACKDVNIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALE------------ 118
T D A + E + + + + + +
Sbjct: 67 LTLDRRRALDGADFVTTQFRVGGLEARAKDERIPLKYGVIGQETNGPGGLFKGLRTIPVI 126
Query: 119 -------KHAAPNCKVLVVANPANTNALILKEFAPSI 148
+ P+ ++ NPA + +
Sbjct: 127 LDIIRDMEELCPDAWLINFTNPAGMVTEAVLRYTKQE 163
|
| >d1obba1 c.2.1.5 (A:2-172) Alpha-glucosidase AglA {Thermotoga maritima [TaxId: 2336]} Length = 171 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Alpha-glucosidase AglA species: Thermotoga maritima [TaxId: 2336]
Score = 42.8 bits (100), Expect = 1e-05
Identities = 20/162 (12%), Positives = 43/162 (26%), Gaps = 34/162 (20%)
Query: 14 AGQIGYALVPMIARGIMLGPDQPVI-LHMLDIEPAAEALNGVKMELIDAA--FPLLKGVV 70
AG ++L + + P + ++DI+ E L+ +
Sbjct: 10 AGSAVFSL--RLVSDLCKTPGLSGSTVTLMDIDE--ERLDAILTIAKKYVEEVGADLKFE 65
Query: 71 ATTDVVEACKDVNIAVMVGGFPRKEGMERKDV--------------------------MS 104
T ++ + D + + +E+
Sbjct: 66 KTMNLDDVIIDADFVINTAMVGGHTYLEKVRQIGEKYGYYRGIDAQEFNMVSDYYTFSNY 125
Query: 105 KNVSIYKAQASALEKHAAPNCKVLVVANPANTNALILKEFAP 146
+ + A +EK + P L ANP ++ P
Sbjct: 126 NQLKYFVDIARKIEKLS-PKAWYLQAANPIFEGTTLVTRTVP 166
|
| >d1e6ua_ c.2.1.2 (A:) GDP-4-keto-6-deoxy-d-mannose epimerase/reductase (GDP-fucose synthetase) {Escherichia coli [TaxId: 562]} Length = 315 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: GDP-4-keto-6-deoxy-d-mannose epimerase/reductase (GDP-fucose synthetase) species: Escherichia coli [TaxId: 562]
Score = 39.1 bits (90), Expect = 4e-04
Identities = 17/80 (21%), Positives = 31/80 (38%), Gaps = 2/80 (2%)
Query: 7 RVLVTGAAGQIGYALVPM-IARG-IMLGPDQPVILHMLDIEPAAEALNGVKMELIDAAFP 64
RV + G G +G A+ RG + L L++LD + +++ + A
Sbjct: 4 RVFIAGHRGMVGSAIRRQLEQRGDVELVLRTRDELNLLDSRAVHDFFASERIDQVYLAAA 63
Query: 65 LLKGVVATTDVVEACKDVNI 84
+ G+VA N+
Sbjct: 64 KVGGIVANNTYPADFIYQNM 83
|
| >d2c5aa1 c.2.1.2 (A:13-375) GDP-mannose-3', 5'-epimerase {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 363 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: GDP-mannose-3', 5'-epimerase species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Score = 36.8 bits (84), Expect = 0.003
Identities = 12/61 (19%), Positives = 23/61 (37%), Gaps = 7/61 (11%)
Query: 1 MAKNPLRVLVTGAAGQIGYALVP-MIARGIMLGPDQPVILHMLDIEPAAEALNGVKMELI 59
++N L++ +TGA G I + + G + E E + + L+
Sbjct: 12 PSEN-LKISITGAGGFIASHIARRLKHEG-----HYVIASDWKKNEHMTEDMFCDEFHLV 65
Query: 60 D 60
D
Sbjct: 66 D 66
|
| >d1ek6a_ c.2.1.2 (A:) Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) {Human (Homo sapiens) [TaxId: 9606]} Length = 346 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) species: Human (Homo sapiens) [TaxId: 9606]
Score = 36.2 bits (82), Expect = 0.004
Identities = 12/22 (54%), Positives = 14/22 (63%), Gaps = 3/22 (13%)
Query: 1 MAKNPLRVLVTGAAGQIGYALV 22
MA+ +VLVTG AG IG V
Sbjct: 1 MAE---KVLVTGGAGYIGSHTV 19
|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 332 | |||
| d7mdha2 | 188 | Malate dehydrogenase {Sorghum (Sorghum vulgare), c | 100.0 | |
| d5mdha2 | 179 | Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 982 | 100.0 | |
| d1y7ta2 | 173 | Malate dehydrogenase {Thermus thermophilus [TaxId: | 100.0 | |
| d1b8pa2 | 171 | Malate dehydrogenase {Aquaspirillum arcticum [TaxI | 100.0 | |
| d1y6ja2 | 169 | Lactate dehydrogenase {Clostridium thermocellum [T | 100.0 | |
| d1i0za2 | 172 | Lactate dehydrogenase {Human (Homo sapiens), heart | 100.0 | |
| d1ojua2 | 152 | Lactate dehydrogenase {Archaeon Archaeoglobus fulg | 100.0 | |
| d1llda2 | 170 | Lactate dehydrogenase {Bifidobacterium longum, str | 100.0 | |
| d1hyea2 | 168 | MJ0490, lactate/malate dehydrogenase {Archaeon Met | 100.0 | |
| d1ez4a2 | 171 | Lactate dehydrogenase {Lactobacillus pentosus [Tax | 99.98 | |
| d1a5za2 | 172 | Lactate dehydrogenase {Thermotoga maritima [TaxId: | 99.98 | |
| d1guza2 | 163 | Malate dehydrogenase {Chlorobium vibrioforme [TaxI | 99.98 | |
| d1uxja2 | 164 | Malate dehydrogenase {Chloroflexus aurantiacus [Ta | 99.98 | |
| d1hyha2 | 163 | L-2-hydroxyisocapronate dehydrogenase, L-HICDH {La | 99.98 | |
| d1ldma2 | 169 | Lactate dehydrogenase {Dogfish (Squalus acanthias) | 99.97 | |
| d1pzga2 | 174 | Lactate dehydrogenase {Toxoplasma gondii [TaxId: 5 | 99.97 | |
| d2ldxa2 | 172 | Lactate dehydrogenase {Mouse (Mus musculus) [TaxId | 99.97 | |
| d1t2da2 | 165 | Lactate dehydrogenase {Malaria parasite (Plasmodiu | 99.97 | |
| d1ldna2 | 168 | Lactate dehydrogenase {Bacillus stearothermophilus | 99.97 | |
| d7mdha1 | 175 | Malate dehydrogenase {Sorghum (Sorghum vulgare), c | 99.97 | |
| d1llca2 | 172 | Lactate dehydrogenase {Lactobacillus casei [TaxId: | 99.97 | |
| d1y7ta1 | 154 | Malate dehydrogenase {Thermus thermophilus [TaxId: | 99.96 | |
| d5mdha1 | 154 | Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 982 | 99.96 | |
| d1o6za1 | 142 | Malate dehydrogenase {Archaeon Haloarcula marismor | 99.96 | |
| d1o6za2 | 161 | Malate dehydrogenase {Archaeon Haloarcula marismor | 99.96 | |
| d1ldna1 | 148 | Lactate dehydrogenase {Bacillus stearothermophilus | 99.96 | |
| d1llda1 | 143 | Lactate dehydrogenase {Bifidobacterium longum, str | 99.96 | |
| d1hyea1 | 145 | MJ0490, lactate/malate dehydrogenase {Archaeon Met | 99.95 | |
| d1ojua1 | 142 | Malate dehydrogenase {Archaeon Archaeoglobus fulgi | 99.95 | |
| d1mlda2 | 169 | Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 982 | 99.95 | |
| d1i0za1 | 160 | Lactate dehydrogenase {Human (Homo sapiens), heart | 99.95 | |
| d1a5za1 | 140 | Lactate dehydrogenase {Thermotoga maritima [TaxId: | 99.95 | |
| d2cmda1 | 145 | Malate dehydrogenase {Escherichia coli [TaxId: 562 | 99.95 | |
| d1hyha1 | 146 | L-2-hydroxyisocapronate dehydrogenase, L-HICDH {La | 99.95 | |
| d1y6ja1 | 142 | Lactate dehydrogenase {Clostridium thermocellum [T | 99.95 | |
| d1ez4a1 | 146 | Lactate dehydrogenase {Lactobacillus pentosus [Tax | 99.95 | |
| d1mlda1 | 144 | Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 982 | 99.95 | |
| d2cmda2 | 167 | Malate dehydrogenase {Escherichia coli [TaxId: 562 | 99.95 | |
| d2ldxa1 | 159 | Lactate dehydrogenase {Mouse (Mus musculus) [TaxId | 99.94 | |
| d1guza1 | 142 | Malate dehydrogenase {Chlorobium vibrioforme [TaxI | 99.94 | |
| d1pzga1 | 154 | Lactate dehydrogenase {Toxoplasma gondii [TaxId: 5 | 99.94 | |
| d1uxja1 | 142 | Malate dehydrogenase {Chloroflexus aurantiacus [Ta | 99.93 | |
| d1t2da1 | 150 | Lactate dehydrogenase {Malaria parasite (Plasmodiu | 99.93 | |
| d1s6ya1 | 169 | 6-phospho-beta-glucosidase {Bacillus stearothermop | 99.81 | |
| d1u8xx1 | 167 | Maltose-6'-phosphate glucosidase GlvA {Bacillus su | 99.79 | |
| d1up7a1 | 162 | 6-phospho-beta-glucosidase {Thermotoga maritima [T | 99.77 | |
| d1obba1 | 171 | Alpha-glucosidase AglA {Thermotoga maritima [TaxId | 99.76 | |
| d2b69a1 | 312 | UDP-glucuronate decarboxylase 1 {Human (Homo sapie | 99.59 | |
| d2c5aa1 | 363 | GDP-mannose-3', 5'-epimerase {Thale cress (Arabido | 99.55 | |
| d1kewa_ | 361 | dTDP-glucose 4,6-dehydratase (RmlB) {Streptococcus | 99.51 | |
| d1db3a_ | 357 | GDP-mannose 4,6-dehydratase {Escherichia coli [Tax | 99.51 | |
| d1udca_ | 338 | Uridine diphosphogalactose-4-epimerase (UDP-galact | 99.49 | |
| d1oc2a_ | 346 | dTDP-glucose 4,6-dehydratase (RmlB) {Streptococcus | 99.48 | |
| d1r6da_ | 322 | dTDP-glucose 4,6-dehydratase (RmlB) {Streptomyces | 99.46 | |
| d1i24a_ | 393 | Sulfolipid biosynthesis protein SQD1 {Thale cress | 99.41 | |
| d1t2aa_ | 347 | GDP-mannose 4,6-dehydratase {Human (Homo sapiens) | 99.34 | |
| d2blla1 | 342 | Polymyxin resistance protein ArnA (PrmI) {Escheric | 99.33 | |
| d1gy8a_ | 383 | Uridine diphosphogalactose-4-epimerase (UDP-galact | 99.32 | |
| d1orra_ | 338 | CDP-tyvelose-2-epimerase {Salmonella typhi [TaxId: | 99.31 | |
| d1sb8a_ | 341 | UDP-N-acetylglucosamine 4-epimerase WbpP {Pseudomo | 99.31 | |
| d1e6ua_ | 315 | GDP-4-keto-6-deoxy-d-mannose epimerase/reductase ( | 99.31 | |
| d1n7ha_ | 339 | GDP-mannose 4,6-dehydratase {Thale-cress (Arabidop | 99.28 | |
| d1rpna_ | 321 | GDP-mannose 4,6-dehydratase {Pseudomonas aeruginos | 99.27 | |
| d1z45a2 | 347 | Uridine diphosphogalactose-4-epimerase (UDP-galact | 99.26 | |
| d1ek6a_ | 346 | Uridine diphosphogalactose-4-epimerase (UDP-galact | 99.23 | |
| d1y1pa1 | 342 | Aldehyde reductase II {Sporobolomyces salmonicolor | 99.22 | |
| d1rkxa_ | 356 | CDP-glucose-4,6-dehydratase {Yersinia pseudotuberc | 99.17 | |
| d2bkaa1 | 232 | TAT-interacting protein TIP30 {Human (Homo sapiens | 99.12 | |
| d1hdoa_ | 205 | Biliverdin IX beta reductase {Human (Homo sapiens) | 99.1 | |
| d1eq2a_ | 307 | ADP-L-glycero-D-mannoheptose 6-epimerase {Escheric | 99.09 | |
| d1vjta1 | 193 | Putative alpha-glucosidase TM0752 {Thermotoga mari | 99.06 | |
| d2q46a1 | 252 | Hypothetical protein At5g02240 (T7H20_290) {Thale | 99.02 | |
| d1n2sa_ | 298 | dTDP-6-deoxy-L-lyxo-4-hexulose reductase (RmlD) {S | 98.8 | |
| d2a35a1 | 212 | Hypothetical protein PA4017 {Pseudomonas aeruginos | 98.76 | |
| d1vl0a_ | 281 | DTDP-4-dehydrorhamnose reductase RfbD {Clostridium | 98.76 | |
| d1qyda_ | 312 | Pinoresinol-lariciresinol reductase {Giant arborvi | 98.65 | |
| d1nffa_ | 244 | Putative oxidoreductase Rv2002 {Mycobacterium tube | 98.55 | |
| d1qyca_ | 307 | Phenylcoumaran benzylic ether reductase {Loblolly | 98.51 | |
| d1k2wa_ | 256 | Sorbitol dehydrogenase {Rhodobacter sphaeroides [T | 98.5 | |
| d1mv8a2 | 202 | GDP-mannose 6-dehydrogenase {Pseudomonas aeruginos | 98.47 | |
| d1cyda_ | 242 | Carbonyl reductase {Mouse (Mus musculus) [TaxId: 1 | 98.46 | |
| d1f0ya2 | 192 | Short chain L-3-hydroxyacyl CoA dehydrogenase {Hum | 98.42 | |
| d1xg5a_ | 257 | Putative dehydrogenase ARPG836 (MGC4172) {Human (H | 98.41 | |
| d1bdba_ | 276 | Cis-biphenyl-2,3-dihydrodiol-2,3-dehydrogenase {Ps | 98.4 | |
| d1ulsa_ | 242 | beta-keto acyl carrier protein reductase {Thermus | 98.39 | |
| d1pr9a_ | 244 | Carbonyl reductase {Human (Homo sapiens) [TaxId: 9 | 98.39 | |
| d1fmca_ | 255 | 7-alpha-hydroxysteroid dehydrogenase {Escherichia | 98.35 | |
| d1q7ba_ | 243 | beta-keto acyl carrier protein reductase {Escheric | 98.35 | |
| d1gega_ | 255 | meso-2,3-butanediol dehydrogenase {Klebsiella pneu | 98.35 | |
| d1hdca_ | 254 | 3-alpha,20-beta-hydroxysteroid dehydrogenase {Stre | 98.34 | |
| d1hxha_ | 253 | 3beta/17beta hydroxysteroid dehydrogenase {Comamon | 98.29 | |
| d2a4ka1 | 241 | beta-keto acyl carrier protein reductase {Thermus | 98.27 | |
| d2ew8a1 | 247 | (s)-1-phenylethanol dehydrogenase {Azoarcus sp. eb | 98.24 | |
| d1x1ta1 | 260 | D(-)-3-hydroxybutyrate dehydrogenase {Pseudomonas | 98.24 | |
| d1zema1 | 260 | Xylitol dehydrogenase {Gluconobacter oxydans [TaxI | 98.22 | |
| d1gz6a_ | 302 | (3R)-hydroxyacyl-CoA dehydrogenase domain of estra | 98.22 | |
| d1dhra_ | 236 | Dihydropteridin reductase (pteridine reductase) {R | 98.21 | |
| d1zk4a1 | 251 | R-specific alcohol dehydrogenase {Lactobacillus br | 98.21 | |
| d1g0oa_ | 272 | 1,3,8-trihydroxynaphtalene reductase (THNR, naphto | 98.2 | |
| d1xgka_ | 350 | Negative transcriptional regulator NmrA {Aspergill | 98.19 | |
| d1bg6a2 | 184 | N-(1-D-carboxylethyl)-L-norvaline dehydrogenase {A | 98.18 | |
| d2ae2a_ | 259 | Tropinone reductase {Jimsonweed (Datura stramonium | 98.18 | |
| d2c07a1 | 251 | beta-keto acyl carrier protein reductase {Malaria | 98.17 | |
| d1geea_ | 261 | Glucose dehydrogenase {Bacillus megaterium [TaxId: | 98.16 | |
| d1iy8a_ | 258 | Levodione reductase {Corynebacterium aquaticum [Ta | 98.16 | |
| d2bd0a1 | 240 | Bacterial sepiapterin reductase {Chlorobium tepidu | 98.15 | |
| d1ooea_ | 235 | Dihydropteridin reductase (pteridine reductase) {N | 98.14 | |
| d1luaa1 | 191 | Methylene-tetrahydromethanopterin dehydrogenase {M | 98.14 | |
| d1vl8a_ | 251 | Gluconate 5-dehydrogenase {Thermotoga maritima [Ta | 98.14 | |
| d1wdka3 | 186 | Fatty oxidation complex alpha subunit, middle doma | 98.14 | |
| d2ag5a1 | 245 | Dehydrogenase/reductase SDR family member 6, DHRS6 | 98.14 | |
| d2bgka1 | 268 | Rhizome secoisolariciresinol dehydrogenase {Mayapp | 98.13 | |
| d1ydea1 | 250 | Retinal dehydrogenase/reductase 3 {Human (Homo sap | 98.12 | |
| d2d1ya1 | 248 | Hypothetical protein TTHA0369 {Thermus thermophilu | 98.11 | |
| d2f1ka2 | 165 | Prephenate dehydrogenase TyrA {Synechocystis sp. p | 98.11 | |
| d1xkqa_ | 272 | Hypothetical protein R05D8.7 {Caenorhabditis elega | 98.1 | |
| d1yb1a_ | 244 | 17-beta-hydroxysteroid dehydrogenase type XI {Huma | 98.09 | |
| d2rhca1 | 257 | beta-keto acyl carrier protein reductase {Streptom | 98.09 | |
| d2gdza1 | 254 | 15-hydroxyprostaglandin dehydrogenase, PGDH {Human | 98.08 | |
| d1ae1a_ | 258 | Tropinone reductase {Jimsonweed (Datura stramonium | 98.06 | |
| d1n1ea2 | 189 | Glycerol-3- phosphate dehydrogenase {Trypanosome ( | 98.06 | |
| d1edoa_ | 244 | beta-keto acyl carrier protein reductase {Oil seed | 98.03 | |
| d1ulua_ | 256 | Enoyl-ACP reductase {Thermus thermophilus [TaxId: | 98.03 | |
| d1xq1a_ | 259 | Tropinone reductase {Thale cress (Arabidopsis thal | 98.03 | |
| d1txga2 | 180 | Glycerol-3- phosphate dehydrogenase {Archaeoglobus | 98.03 | |
| d1yxma1 | 297 | Peroxisomal trans 2-enoyl CoA reductase {Human (Ho | 97.99 | |
| d1o5ia_ | 234 | beta-keto acyl carrier protein reductase {Thermoto | 97.99 | |
| d1h5qa_ | 260 | Mannitol dehydrogenase {Mushroom (Agaricus bisporu | 97.98 | |
| d1xhla_ | 274 | Hypothetical protein F25D1.5 {Caenorhabditis elega | 97.95 | |
| d1ja9a_ | 259 | 1,3,6,8-tetrahydroxynaphthalene reductase {Rice bl | 97.95 | |
| d1spxa_ | 264 | Glucose dehydrogenase (5l265) {Nematode (Caenorhab | 97.94 | |
| d1ks9a2 | 167 | Ketopantoate reductase PanE {Escherichia coli [Tax | 97.9 | |
| d1uzma1 | 237 | beta-keto acyl carrier protein reductase {Mycobact | 97.88 | |
| d1sbya1 | 254 | Drosophila alcohol dehydrogenase {Fly (Drosophila | 97.86 | |
| d1t4ba1 | 146 | Aspartate beta-semialdehyde dehydrogenase {Escheri | 97.85 | |
| d1dlja2 | 196 | UDP-glucose dehydrogenase (UDPGDH) {Streptococcus | 97.84 | |
| d1w6ua_ | 294 | 2,4-dienoyl-CoA reductase, mitochondrial (DECR) {H | 97.83 | |
| d1xu9a_ | 269 | 11-beta-hydroxysteroid dehydrogenase 1 {Human (Hom | 97.78 | |
| d2pv7a2 | 152 | Prephenate dehydrogenase TyrA {Haemophilus influen | 97.76 | |
| d2g5ca2 | 171 | Prephenate dehydrogenase TyrA {Aquifex aeolicus [T | 97.73 | |
| d1qsga_ | 258 | Enoyl-ACP reductase {Escherichia coli [TaxId: 562] | 97.67 | |
| d2ahra2 | 152 | Pyrroline-5-carboxylate reductase ProC {Streptococ | 97.64 | |
| d2o23a1 | 248 | Type II 3-hydroxyacyl-CoA dehydrogenase {Human (Ho | 97.63 | |
| d1vpda2 | 161 | Hydroxyisobutyrate dehydrogenase {Salmonella typhi | 97.59 | |
| d1mb4a1 | 147 | Aspartate beta-semialdehyde dehydrogenase {Vibrio | 97.55 | |
| d1snya_ | 248 | Carbonyl reductase sniffer {Fruit fly (Drosophila | 97.55 | |
| d3cuma2 | 162 | Hydroxyisobutyrate dehydrogenase {Pseudomonas aeru | 97.55 | |
| d1zmta1 | 252 | Halohydrin dehalogenase HheC {Agrobacterium tumefa | 97.53 | |
| d1wmaa1 | 275 | Carbonyl reductase/20beta-hydroxysteroid dehydroge | 97.53 | |
| d2fr1a1 | 259 | Erythromycin synthase, eryAI, 1st ketoreductase mo | 97.52 | |
| d2h7ma1 | 268 | Enoyl-ACP reductase {Mycobacterium tuberculosis, T | 97.46 | |
| d2pd4a1 | 274 | Enoyl-ACP reductase {Helicobacter pylori [TaxId: 2 | 97.44 | |
| d1jtva_ | 285 | Human estrogenic 17beta-hydroxysteroid dehydrogena | 97.36 | |
| d2g17a1 | 179 | N-acetyl-gamma-glutamyl-phosphate reductase ArgC { | 97.35 | |
| d1i36a2 | 152 | Conserved hypothetical protein MTH1747 {Archaeon M | 97.28 | |
| d1yqga2 | 152 | Pyrroline-5-carboxylate reductase ProC {Neisseria | 97.27 | |
| d1jaya_ | 212 | Coenzyme F420H2:NADP+ oxidoreductase (FNO) {Archae | 97.25 | |
| d1lssa_ | 132 | Ktn Mja218 {Archaeon Methanococcus jannaschii [Tax | 97.25 | |
| d1oaaa_ | 259 | Sepiapterin reductase {Mouse (Mus musculus) [TaxId | 97.2 | |
| d1yo6a1 | 250 | Putative carbonyl reductase sniffer {Caenorhabditi | 97.2 | |
| d1uaya_ | 241 | Type II 3-hydroxyacyl-CoA dehydrogenase {Thermus t | 97.15 | |
| d2cvoa1 | 183 | Putative semialdehyde dehydrogenase {Rice (Oryza s | 97.1 | |
| d2hjsa1 | 144 | Usg-1 protein homolog PA3116 {Pseudomonas aerugino | 97.04 | |
| d1e5qa1 | 182 | Saccharopine reductase {Rice blast fungus (Magnapo | 97.0 | |
| d1e7wa_ | 284 | Dihydropteridin reductase (pteridine reductase) {L | 96.92 | |
| d1vkna1 | 176 | N-acetyl-gamma-glutamyl-phosphate reductase ArgC { | 96.91 | |
| d1gpja2 | 159 | Glutamyl tRNA-reductase middle domain {Archaeon Me | 96.85 | |
| d2hmva1 | 134 | Ktn bsu222 {Bacillus subtilis [TaxId: 1423]} | 96.78 | |
| d1mxha_ | 266 | Dihydropteridin reductase (pteridine reductase) {T | 96.78 | |
| d1fjha_ | 257 | 3-alpha-hydroxysteroid dehydrogenase {Comamonas te | 96.62 | |
| d2pgda2 | 176 | 6-phosphogluconate dehydrogenase {Sheep (Ovis orie | 96.6 | |
| d1d7oa_ | 297 | Enoyl-ACP reductase {Oil seed rape (Brassica napus | 96.58 | |
| d1pgja2 | 178 | 6-phosphogluconate dehydrogenase {Trypanosoma bruc | 96.51 | |
| d1diha1 | 162 | Dihydrodipicolinate reductase {Escherichia coli [T | 96.49 | |
| d1pjca1 | 168 | L-alanine dehydrogenase {Phormidium lapideum [TaxI | 96.35 | |
| d2jfga1 | 93 | UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase | 96.34 | |
| d1c0pa1 | 268 | D-aminoacid oxidase, N-terminal domain {Rhodotorul | 96.09 | |
| d1mx3a1 | 193 | Transcription corepressor CtbP {Human (Homo sapien | 96.0 | |
| d1id1a_ | 153 | Rck domain from putative potassium channel Kch {Es | 95.98 | |
| d1qp8a1 | 181 | Putative formate dehydrogenase {Archaeon Pyrobacul | 95.65 | |
| d2naca1 | 188 | Formate dehydrogenase {Pseudomonas sp., strain 101 | 95.63 | |
| d1li4a1 | 163 | S-adenosylhomocystein hydrolase {Human (Homo sapie | 95.45 | |
| d1p3da1 | 96 | UDP-N-acetylmuramate-alanine ligase MurC {Haemophi | 95.43 | |
| d1j4aa1 | 197 | D-lactate dehydrogenase {Lactobacillus helveticus | 95.41 | |
| d2gz1a1 | 154 | Aspartate beta-semialdehyde dehydrogenase {Strepto | 95.41 | |
| d1gdha1 | 191 | D-glycerate dehydrogenase {Hyphomicrobium methylov | 95.3 | |
| d1nvta1 | 177 | Shikimate 5-dehydrogenase AroE {Archaeon Methanoco | 95.24 | |
| d1nyta1 | 170 | Shikimate 5-dehydrogenase AroE {Escherichia coli [ | 95.23 | |
| d1pjqa1 | 113 | Siroheme synthase CysG, domain 1 {Salmonella typhi | 95.11 | |
| d1f06a1 | 170 | Diaminopimelic acid dehydrogenase (DAPDH) {Coryneb | 95.05 | |
| d1sc6a1 | 188 | Phosphoglycerate dehydrogenase {Escherichia coli [ | 94.98 | |
| d1x7da_ | 340 | Ornithine cyclodeaminase {Pseudomonas putida [TaxI | 94.92 | |
| d1dxya1 | 199 | D-2-hydroxyisocaproate dehydrogenase {Lactobacillu | 94.85 | |
| d1ebda2 | 117 | Dihydrolipoamide dehydrogenase {Bacillus stearothe | 94.85 | |
| d1vi2a1 | 182 | Putative shikimate dehydrogenase YdiB {Escherichia | 94.74 | |
| d1v59a2 | 122 | Dihydrolipoamide dehydrogenase {Baker's yeast (Sac | 94.7 | |
| d1p77a1 | 171 | Shikimate 5-dehydrogenase AroE {Haemophilus influe | 94.69 | |
| d1a4ia1 | 170 | Methylenetetrahydrofolate dehydrogenase/cyclohydro | 94.69 | |
| d1ygya1 | 184 | Phosphoglycerate dehydrogenase {Mycobacterium tube | 94.66 | |
| d1onfa2 | 117 | Glutathione reductase {Plasmodium falciparum [TaxI | 94.64 | |
| d1gesa2 | 116 | Glutathione reductase {Escherichia coli [TaxId: 56 | 94.61 | |
| d1uh5a_ | 329 | Enoyl-ACP reductase {Malaria parasite (Plasmodium | 94.57 | |
| d1ydwa1 | 184 | Probable oxidoreductase At4g09670 {Thale cress (Ar | 94.57 | |
| d2iida1 | 370 | L-aminoacid oxidase {Malayan pit viper (Calloselas | 94.55 | |
| d1b0aa1 | 166 | Methylenetetrahydrofolate dehydrogenase/cyclohydro | 94.5 | |
| d2i76a2 | 153 | Hypothetical protein TM1727 {Thermotoga maritima [ | 94.45 | |
| d2cvza2 | 156 | Hydroxyisobutyrate dehydrogenase {Thermus thermoph | 94.34 | |
| d2bi7a1 | 314 | UDP-galactopyranose mutase, N-terminal domain {Kle | 94.32 | |
| d1d7ya2 | 121 | NADH-dependent ferredoxin reductase, BphA4 {Pseudo | 94.23 | |
| d1l7da1 | 183 | Nicotinamide nucleotide transhydrogenase dI compon | 94.12 | |
| d2voua1 | 265 | Dihydroxypyridine hydroxylase DhpH {Arthrobacter n | 94.1 | |
| d1npya1 | 167 | Shikimate 5-dehydrogenase-like protein HI0607 {Hae | 93.96 | |
| d1nhpa2 | 123 | NADH peroxidase {Enterococcus faecalis [TaxId: 135 | 93.93 | |
| d1gtea4 | 196 | Dihydropyrimidine dehydrogenase, domain 2 {Pig (Su | 93.91 | |
| d1b7go1 | 178 | Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) { | 93.89 | |
| d1edza1 | 171 | Methylenetetrahydrofolate dehydrogenase/cyclohydro | 93.79 | |
| d3lada2 | 119 | Dihydrolipoamide dehydrogenase {Azotobacter vinela | 93.72 | |
| d1tlta1 | 164 | Virulence factor MviM {Escherichia coli [TaxId: 56 | 93.66 | |
| d1lvla2 | 115 | Dihydrolipoamide dehydrogenase {Pseudomonas putida | 93.65 | |
| d3grsa2 | 125 | Glutathione reductase {Human (Homo sapiens) [TaxId | 93.5 | |
| d1q1ra2 | 133 | Putidaredoxin reductase {Pseudomonas putida [TaxId | 93.47 | |
| d2ivda1 | 347 | Protoporphyrinogen oxidase {Myxococcus xanthus [Ta | 93.46 | |
| d1h6va2 | 122 | Mammalian thioredoxin reductase {Rat (Rattus norve | 93.45 | |
| d2gv8a1 | 335 | Flavin-dependent monoxygenase SPBP16F5.08c {Schizo | 93.42 | |
| d1xeaa1 | 167 | Putative oxidoreductase VCA1048 {Vibrio cholerae [ | 93.42 | |
| d1omoa_ | 320 | Archaeal alanine dehydrogenase {Archaeon Archaeogl | 93.4 | |
| d1ps9a3 | 179 | 2,4-dienoyl-CoA reductase, middle domain {Escheric | 93.39 | |
| d3c96a1 | 288 | Monooxygenase PhzS {Pseudomonas aeruginosa [TaxId: | 93.32 | |
| d1seza1 | 373 | Protoporphyrinogen oxidase {Tobacco (Nicotiana tab | 93.31 | |
| d1v8ba1 | 163 | S-adenosylhomocystein hydrolase {Plasmodium falcip | 93.18 | |
| d1jw9b_ | 247 | Molybdenum cofactor biosynthesis protein MoeB {Esc | 93.14 | |
| d1e3ja2 | 170 | Ketose reductase (sorbitol dehydrogenase) {Silverl | 93.07 | |
| d1o0sa1 | 308 | Mitochondrial NAD(P)-dependent malic enzyme {Pig r | 93.03 | |
| d1r0ka2 | 150 | 1-deoxy-D-xylulose-5-phosphate reductoisomerase {Z | 92.93 | |
| d1dxha2 | 185 | Ornithine transcarbamoylase {Pseudomonas aeruginos | 92.87 | |
| d2czca2 | 172 | Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) { | 92.87 | |
| d1ryia1 | 276 | Glycine oxidase ThiO {Bacillus sp. [TaxId: 1409]} | 92.86 | |
| d1cf2o1 | 171 | Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) { | 92.81 | |
| d1nhpa1 | 198 | NADH peroxidase {Enterococcus faecalis [TaxId: 135 | 92.72 | |
| d1lqta2 | 239 | Ferredoxin:NADP reductase FprA {Mycobacterium tube | 92.72 | |
| d1ojta2 | 125 | Dihydrolipoamide dehydrogenase {Neisseria meningit | 92.55 | |
| d1k0ia1 | 292 | p-Hydroxybenzoate hydroxylase, PHBH {Pseudomonas a | 92.41 | |
| d3etja2 | 78 | N5-carboxyaminoimidazole ribonucleotide synthetase | 92.4 | |
| d1zh8a1 | 181 | Hypothetical protein TM0312 {Thermotoga maritima [ | 92.39 | |
| d1fcda1 | 186 | Flavocytochrome c sulfide dehydrogenase, FCSD, fla | 92.27 | |
| d1djqa3 | 233 | Trimethylamine dehydrogenase, middle domain {Methy | 92.08 | |
| d1q0qa2 | 151 | 1-deoxy-D-xylulose-5-phosphate reductoisomerase {E | 92.05 | |
| d1j6ua1 | 89 | UDP-N-acetylmuramate-alanine ligase MurC {Thermoto | 91.96 | |
| d1gq2a1 | 298 | Mitochondrial NAD(P)-dependent malic enzyme {Domes | 91.88 | |
| d1xhca2 | 122 | NADH oxidase /nitrite reductase {Pyrococcus furios | 91.83 | |
| d1i8ta1 | 298 | UDP-galactopyranose mutase, N-terminal domain {Esc | 91.75 | |
| d1w5fa1 | 194 | Cell-division protein FtsZ {Thermotoga maritima [T | 91.74 | |
| d1pl8a2 | 171 | Ketose reductase (sorbitol dehydrogenase) {Human ( | 91.63 | |
| d1vm6a3 | 128 | Dihydrodipicolinate reductase {Thermotoga maritima | 91.59 | |
| d1pj3a1 | 294 | Mitochondrial NAD(P)-dependent malic enzyme {Human | 91.37 | |
| d2dw4a2 | 449 | Lysine-specific histone demethylase 1, LSD1 {Human | 91.08 | |
| d1h6da1 | 221 | Glucose-fructose oxidoreductase, N-terminal domain | 91.04 | |
| d1kjqa2 | 111 | Glycinamide ribonucleotide transformylase PurT, N- | 91.01 | |
| d1mo9a2 | 121 | NADH-dependent 2-ketopropyl coenzyme M oxidoreduct | 90.91 | |
| d1dxla2 | 123 | Dihydrolipoamide dehydrogenase {Garden pea (Pisum | 90.87 | |
| d1iz0a2 | 171 | Quinone oxidoreductase {Thermus thermophilus [TaxI | 90.55 | |
| d1up7a2 | 253 | 6-phospho-beta-glucosidase {Thermotoga maritima [T | 90.37 | |
| d1vlva2 | 161 | Ornithine transcarbamoylase {Thermotoga maritima [ | 90.34 | |
| d1duvg2 | 183 | Ornithine transcarbamoylase {Escherichia coli [Tax | 90.3 | |
| d1kifa1 | 246 | D-aminoacid oxidase, N-terminal domain {Pig (Sus s | 90.17 | |
| d1yovb1 | 426 | UBA3 {Human (Homo sapiens) [TaxId: 9606]} | 90.14 | |
| d1aoga2 | 117 | Trypanothione reductase {Trypanosoma cruzi [TaxId: | 89.92 | |
| d2vapa1 | 209 | Cell-division protein FtsZ {Archaeon Methanococcus | 89.7 | |
| d1feca2 | 117 | Trypanothione reductase {Crithidia fasciculata [Ta | 89.67 | |
| d2fy8a1 | 129 | Potassium channel-related protein MthK {Archaeon M | 89.56 | |
| d2bcgg1 | 297 | Guanine nucleotide dissociation inhibitor, GDI {Ba | 89.34 | |
| d1pj5a2 | 305 | N,N-dimethylglycine oxidase {Arthrobacter globifor | 89.15 | |
| d1b5qa1 | 347 | Polyamine oxidase {Maize (Zea mays) [TaxId: 4577]} | 89.01 | |
| d1pvva2 | 163 | Ornithine transcarbamoylase {Archaeon Pyrococcus f | 88.91 | |
| d1d5ta1 | 336 | Guanine nucleotide dissociation inhibitor, GDI {Co | 88.59 | |
| d2gf3a1 | 281 | Sarcosine oxidase {Bacillus sp., strain b0618 [Tax | 88.45 | |
| d1uufa2 | 168 | Hypothetical protein YahK {Escherichia coli [TaxId | 88.24 | |
| d1nvmb1 | 157 | Acetaldehyde dehydrogenase (acylating) {Pseudomona | 88.18 | |
| d1cjca2 | 230 | Adrenodoxin reductase of mitochondrial p450 system | 88.16 | |
| d1leha1 | 230 | Leucine dehydrogenase {Bacillus sphaericus [TaxId: | 87.47 | |
| d2i0za1 | 251 | Flavoprotein BC4706 {Bacillus cereus [TaxId: 1396] | 87.24 | |
| d1pqwa_ | 183 | Putative enoyl reductase domain of polyketide synt | 86.99 | |
| d1xhca1 | 167 | NADH oxidase /nitrite reductase {Pyrococcus furios | 86.98 | |
| d1o8ca2 | 77 | Hypothetical protein YhdH {Escherichia coli [TaxId | 86.97 | |
| d1vl6a1 | 222 | Malate oxidoreductase (malic enzyme) {Thermotoga m | 86.77 | |
| d1w4xa1 | 298 | Phenylacetone monooxygenase {Thermobifida fusca [T | 86.72 | |
| d1c1da1 | 201 | Phenylalanine dehydrogenase {Rhodococcus sp., M4 [ | 86.16 | |
| d2h1qa1 | 251 | Hypothetical protein Dhaf_3308 {Desulfitobacterium | 85.98 | |
| d2gqfa1 | 253 | Hypothetical protein HI0933 {Haemophilus influenza | 85.16 | |
| d1rq2a1 | 198 | Cell-division protein FtsZ {Mycobacterium tubercul | 85.1 | |
| d2gv8a2 | 107 | Flavin-dependent monoxygenase SPBP16F5.08c {Schizo | 85.02 | |
| d1jqba2 | 174 | Bacterial secondary alcohol dehydrogenase {Clostri | 84.61 | |
| d1yl7a1 | 135 | Dihydrodipicolinate reductase {Mycobacterium tuber | 84.55 | |
| d1q1ra1 | 185 | Putidaredoxin reductase {Pseudomonas putida [TaxId | 84.43 | |
| d1ofua1 | 198 | Cell-division protein FtsZ {Pseudomonas aeruginosa | 84.23 | |
| d1llua2 | 166 | Alcohol dehydrogenase {Pseudomonas aeruginosa [Tax | 83.89 | |
| d1vdca1 | 192 | Thioredoxin reductase {Mouse-ear cress (Arabidopsi | 83.71 | |
| d1kyqa1 | 150 | Bifunctional dehydrogenase/ferrochelatase Met8p, N | 83.58 | |
| d2nvwa1 | 237 | Galactose/lactose metabolism regulatory protein GA | 83.19 | |
| d2v5za1 | 383 | Monoamine oxidase B {Human (Homo sapiens) [TaxId: | 82.45 | |
| d1m6ia2 | 137 | Apoptosis-inducing factor (AIF) {Human (Homo sapie | 82.33 | |
| d1kola2 | 195 | Formaldehyde dehydrogenase {Pseudomonas putida [Ta | 81.99 | |
| d1v3va2 | 182 | Leukotriene b4 12-hydroxydehydrogenase/prostagland | 81.38 | |
| d1yb5a2 | 174 | Quinone oxidoreductase {Human (Homo sapiens) [TaxI | 81.26 | |
| d1rjwa2 | 168 | Alcohol dehydrogenase {Bacillus stearothermophilus | 80.61 | |
| d1np3a2 | 182 | Class I ketol-acid reductoisomerase (KARI) {Pseudo | 80.55 | |
| d2dt5a2 | 126 | Transcriptional repressor Rex, C-terminal domain { | 80.38 | |
| d1a9xa3 | 127 | Carbamoyl phosphate synthetase (CPS), large subuni | 80.22 | |
| d1lc0a1 | 172 | Biliverdin reductase {Rat (Rattus norvegicus) [Tax | 80.19 |
| >d7mdha2 d.162.1.1 (A:198-385) Malate dehydrogenase {Sorghum (Sorghum vulgare), chloroplast [TaxId: 4558]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: LDH C-terminal domain-like superfamily: LDH C-terminal domain-like family: Lactate & malate dehydrogenases, C-terminal domain domain: Malate dehydrogenase species: Sorghum (Sorghum vulgare), chloroplast [TaxId: 4558]
Probab=100.00 E-value=4.8e-39 Score=270.68 Aligned_cols=171 Identities=40% Similarity=0.679 Sum_probs=159.5
Q ss_pred ecccHHHHHHHHHHHcCCCCCCeeeeEEEecCCCceeecccCcccccCCCCcchhhhccccccchhHHHHHHHhhHHHHH
Q 019990 157 TRLDHNRAMGQISERLKVHVSDVKNVIIWGNHSSTQYPDVNHATVTTSKGEKPVREAVADDNWLNTEFITTVQQRGAAII 236 (332)
Q Consensus 157 t~l~~~r~~~~~a~~~~v~~~~v~~~~V~G~hg~~~v~~~s~~~v~~~~~~~p~~~~~~~~~~~~~~~~~~v~~~~~~i~ 236 (332)
|.||+.|+++++|+++|++|.+|++++|||+||+++||+||++++ +|+|+.+++.++.|..+++.+.+++++++++
T Consensus 1 T~LDs~R~r~~lA~~l~V~~~~V~~~iI~GeHGds~vp~~S~a~v----~g~~l~~~~~~~~~~~~~~~~~v~~~~~~ii 76 (188)
T d7mdha2 1 TRLDENRAKCQLALKAGVFYDKVSNVTIWGNHSTTQVPDFLNAKI----DGRPVKEVIKRTKWLEEEFTITVQKRGGALI 76 (188)
T ss_dssp CHHHHHHHHHHHHHHTTSCGGGEECCEEEBCSSTTCEEECSSCEE----TTEEGGGTCCCHHHHHHHHHHHHHTHHHHHH
T ss_pred CccHHHHHHHHHHHHHCcCHHHeeEEEEEEcCCCcEeeeeeccEe----eccchhhcccchhhhHHHHHHHHhhhHHHHH
Confidence 679999999999999999999999888899999999999999999 9999999999888888999999999999999
Q ss_pred HhcCCcchHHHHHHHHHHHHHHHcCCCCCcEEEEEEeecCC-CCCCCCeEEEEeEEEe-CCeEEEecCCCCCHHHHHHHH
Q 019990 237 KARKLSSALSAASSACDHIRDWVLGTPKGTWVSMGVYSDGS-YGIPEGLIYSFPVTCE-KGEWSIVKGLKVDEFSRAKMD 314 (332)
Q Consensus 237 ~~~g~~~~~~~a~a~~~~i~~~~~~~~~~~i~~~~v~~~g~-yg~~~~~~~s~Pv~~~-~G~~~~~~~~~l~~~E~~~l~ 314 (332)
+.||+++++++|.|+++++.+|+.+.+++.++|++++++|+ ||+++|+|||+||++| +|+|+++++++||++|+++|+
T Consensus 77 ~~kg~s~~~s~A~A~~~~~~ai~~~~~~~~~~s~~v~~~g~~YGi~~~v~~s~Pv~ig~~G~~~iv~~l~L~~~e~~~l~ 156 (188)
T d7mdha2 77 QKWGRSSAASTAVSIADAIKSLVTPTPEGDWFSTGVYTTGNPYGIAEDIVFSMPCRSKGDGDYELATDVSNDDFLWERIK 156 (188)
T ss_dssp HHTSSCCHHHHHHHHHHHHHHHHSCCCTTCCEEEEEECTTCSSCCCSSSEEEEEEECCSSSCCEECCCCCCCHHHHHHHH
T ss_pred HhhcccchhhHHHHHHHHHHHHHcCCCCCceEEEEEEeCCCccCCCCCeEEEEeeEECCCccEEEeCCCCCCHHHHHHHH
Confidence 99999999999999999999999887667899999999995 9998899999999999 999999878999999999999
Q ss_pred HHHHHHHHHHHHHhhhh
Q 019990 315 ATAEELAEEKTLAYSCL 331 (332)
Q Consensus 315 ~s~~~i~~~~~~~~~~~ 331 (332)
+|+++|+++.+.+...|
T Consensus 157 ~S~~eL~~e~~~v~~Ll 173 (188)
T d7mdha2 157 KSEAELLAEKKCVAHLT 173 (188)
T ss_dssp HHHHHHHHHHHHTHHHH
T ss_pred HHHHHHHHHHHHHHHhh
Confidence 99999998877665443
|
| >d5mdha2 d.162.1.1 (A:155-333) Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: LDH C-terminal domain-like superfamily: LDH C-terminal domain-like family: Lactate & malate dehydrogenases, C-terminal domain domain: Malate dehydrogenase species: Pig (Sus scrofa) [TaxId: 9823]
Probab=100.00 E-value=5.1e-37 Score=257.64 Aligned_cols=171 Identities=64% Similarity=0.961 Sum_probs=154.4
Q ss_pred ecccHHHHHHHHHHHcCCCCCCeeeeEEEecCCCceeecccCcccccCCCCcchhhhccc----cccchhHHHHHHHhhH
Q 019990 157 TRLDHNRAMGQISERLKVHVSDVKNVIIWGNHSSTQYPDVNHATVTTSKGEKPVREAVAD----DNWLNTEFITTVQQRG 232 (332)
Q Consensus 157 t~l~~~r~~~~~a~~~~v~~~~v~~~~V~G~hg~~~v~~~s~~~v~~~~~~~p~~~~~~~----~~~~~~~~~~~v~~~~ 232 (332)
|.||+.|+++++|+++|++|++|++++|||+||+++||+||++++ +|+|+.+++.+ +.|..+++.+.+++++
T Consensus 1 T~LDs~R~r~~la~~l~V~~~~V~~~vI~GeHG~s~vp~~S~a~v----~g~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ 76 (179)
T d5mdha2 1 TRLDHNRAKAQIALKLGVTSDDVKNVIIWGNHSSTQYPDVNHAKV----KLQAKEVGVYEAVKDDSWLKGEFITTVQQRG 76 (179)
T ss_dssp CHHHHHHHHHHHHHHHTCCGGGEECCEEEBCSSTTCEEECTTCEE----ECSSCEEEHHHHHCCHHHHHTHHHHHHHHHH
T ss_pred CccHHHHHHHHHHHHHCcCHHHcEEEEEEEcCCCcccccchhcee----cCcchhhhhhhccccchhhHHHHHHHHHhcc
Confidence 679999999999999999999999988899999999999999999 99998776543 2466788999999999
Q ss_pred HHHHHhcCCcchHHHHHHHHHHHHHHHcCCCCCcEEEEEEeecC-CCCCCCCeEEEEeEEEe-CCeEEEecCCCCCHHHH
Q 019990 233 AAIIKARKLSSALSAASSACDHIRDWVLGTPKGTWVSMGVYSDG-SYGIPEGLIYSFPVTCE-KGEWSIVKGLKVDEFSR 310 (332)
Q Consensus 233 ~~i~~~~g~~~~~~~a~a~~~~i~~~~~~~~~~~i~~~~v~~~g-~yg~~~~~~~s~Pv~~~-~G~~~~~~~~~l~~~E~ 310 (332)
++|++.||+++++++|+|+++++.+++.+.++..++|++|+++| +||+++++|||+||+++ +|+.++. +++||++|+
T Consensus 77 ~~i~~~~~~ss~~~~a~a~~~~~~~i~~~~~~~~~~s~~v~~~g~~yGi~~~v~~s~P~~lg~~Gv~~v~-~l~L~~~E~ 155 (179)
T d5mdha2 77 AAVIKARKLSSAMSAAKAICDHVRDIWFGTPEGEFVSMGIISDGNSYGVPDDLLYSFPVTIKDKTWKIVE-GLPINDFSR 155 (179)
T ss_dssp HHHHHHHSSCCCHHHHHHHHHHHHHHHHCCCTTCCEEEEEECTTCSSSCCSSCEEEEEEEEETTEEEECC-CCCCCHHHH
T ss_pred HhhhhccCcchHHHHHHHHHHHHHHHHhhcccCCceeEEEEccCcccCCccceEEeeeEEEcCCcEEEEe-CCCCCHHHH
Confidence 99999999999899999999999988887666788999999997 89999999999999999 5555555 699999999
Q ss_pred HHHHHHHHHHHHHHHHHhhhhC
Q 019990 311 AKMDATAEELAEEKTLAYSCLN 332 (332)
Q Consensus 311 ~~l~~s~~~i~~~~~~~~~~~~ 332 (332)
++|++|+++|+++++.+.++||
T Consensus 156 ~~l~~Sa~~L~~~~~~~~~~l~ 177 (179)
T d5mdha2 156 EKMDLTAKELAEEKETAFEFLS 177 (179)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhc
Confidence 9999999999999999999985
|
| >d1y7ta2 d.162.1.1 (A:154-332) Malate dehydrogenase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: LDH C-terminal domain-like superfamily: LDH C-terminal domain-like family: Lactate & malate dehydrogenases, C-terminal domain domain: Malate dehydrogenase species: Thermus thermophilus [TaxId: 274]
Probab=100.00 E-value=6.8e-35 Score=243.56 Aligned_cols=167 Identities=51% Similarity=0.860 Sum_probs=146.1
Q ss_pred eecccHHHHHHHHHHHcCCCCCCeeeeEEEecCCCceeecccCcccccCCCCcchhhhccccccchhHHHHHHHhhHHHH
Q 019990 156 LTRLDHNRAMGQISERLKVHVSDVKNVIIWGNHSSTQYPDVNHATVTTSKGEKPVREAVADDNWLNTEFITTVQQRGAAI 235 (332)
Q Consensus 156 ~t~l~~~r~~~~~a~~~~v~~~~v~~~~V~G~hg~~~v~~~s~~~v~~~~~~~p~~~~~~~~~~~~~~~~~~v~~~~~~i 235 (332)
+|.||+.||++++|+++|++|.+|++++|||+||++++|+||++++ +|+|+.++..+..+..+.+.+ ...++.++
T Consensus 1 ~T~LDs~R~r~~lA~~l~v~~~~V~~~iI~GeHG~s~vp~~S~~~v----~g~~~~~~~~~~~~~~~~~~~-~~~~~~~~ 75 (173)
T d1y7ta2 1 MTRLDHNRAKAQLAKKTGTGVDRIRRMTVWGNHSSTMFPDLFHAEV----DGRPALELVDMEWYEKVFIPT-VAQRGAAI 75 (173)
T ss_dssp CCHHHHHHHHHHHHHHHTCCGGGEECCEEEBCSSTTCEEECSSCEE----TTEEGGGTSCHHHHHHTHHHH-HHHHHHHH
T ss_pred CChhHHHHHHHHHHHHHCcCHHHcEEEEEEEecCccEEeeeeeeeE----cCccHHHhcccccccchhhhh-hhhhHHHH
Confidence 4789999999999999999999999988899999999999999999 999999988766554444444 44555566
Q ss_pred HHhcCCcchHHHHHHHHHHHHHHHcCCCCCcEEEEEEeecCCCCCCCCeEEEEeEEEeCCeEEEecCCCCCHHHHHHHHH
Q 019990 236 IKARKLSSALSAASSACDHIRDWVLGTPKGTWVSMGVYSDGSYGIPEGLIYSFPVTCEKGEWSIVKGLKVDEFSRAKMDA 315 (332)
Q Consensus 236 ~~~~g~~~~~~~a~a~~~~i~~~~~~~~~~~i~~~~v~~~g~yg~~~~~~~s~Pv~~~~G~~~~~~~~~l~~~E~~~l~~ 315 (332)
+..++.++++++|.++++++.+++.+.++++++|++++++|+||+++++|||+||++++|+|+++.+++||++|+++|++
T Consensus 76 ~~~~~~~s~~~~a~a~~~~~~~~~~~~~~~~~~~~~v~~~g~YGi~~~~~~s~Pvi~~~gg~~~v~~l~L~~~E~~~l~~ 155 (173)
T d1y7ta2 76 IQARGASSAASAANAAIEHIRDWALGTPEGDWVSMAVPSQGEYGIPEGIVYSFPVTAKDGAYRVVEGLEINEFARKRMEI 155 (173)
T ss_dssp HHHHSSCCHHHHHHHHHHHHHHHHTBCCTTCCEEEEEECSSGGGCCTTSEEEEEEEEETTEEEECCCCCCCHHHHHHHHH
T ss_pred HHHhccCchhhHHHHHHHHHHHHhcccCCCCceeeEEEeccccCCccceeEeeeEEEeCCeEEEecCCCCCHHHHHHHHH
Confidence 66666677788899999999888886677899999999999999999999999999889989988789999999999999
Q ss_pred HHHHHHHHHHHH
Q 019990 316 TAEELAEEKTLA 327 (332)
Q Consensus 316 s~~~i~~~~~~~ 327 (332)
|+++|++.++.+
T Consensus 156 s~~~L~~~~e~v 167 (173)
T d1y7ta2 156 TAQELLDEMEQV 167 (173)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 999999998865
|
| >d1b8pa2 d.162.1.1 (A:159-329) Malate dehydrogenase {Aquaspirillum arcticum [TaxId: 87645]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: LDH C-terminal domain-like superfamily: LDH C-terminal domain-like family: Lactate & malate dehydrogenases, C-terminal domain domain: Malate dehydrogenase species: Aquaspirillum arcticum [TaxId: 87645]
Probab=100.00 E-value=5.8e-34 Score=237.46 Aligned_cols=169 Identities=50% Similarity=0.876 Sum_probs=152.6
Q ss_pred cccHHHHHHHHHHHcCCCCCCeeeeEEEecCCCceeecccCcccccCCCCcchhhhccccccchhHHHHHHHhhHHHHHH
Q 019990 158 RLDHNRAMGQISERLKVHVSDVKNVIIWGNHSSTQYPDVNHATVTTSKGEKPVREAVADDNWLNTEFITTVQQRGAAIIK 237 (332)
Q Consensus 158 ~l~~~r~~~~~a~~~~v~~~~v~~~~V~G~hg~~~v~~~s~~~v~~~~~~~p~~~~~~~~~~~~~~~~~~v~~~~~~i~~ 237 (332)
.||+.|+++++|+++|++|++|++++|||+||++++|+||++++ +|.|+.++..+..|..+++.+.+++++.++..
T Consensus 2 ~LD~~R~r~~lA~kl~v~~~~V~~~iI~GehG~s~vp~~S~~~i----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 77 (171)
T d1b8pa2 2 RLDHNRALSQIAAKTGKPVSSIEKLFVWGNHSPTMYADYRYAQI----DGASVKDMINDDAWNRDTFLPTVGKRGAAIID 77 (171)
T ss_dssp HHHHHHHHHHHHHHHTCCGGGEESCEEEBCSSTTCEEECSSCEE----TTEEHHHHHCCHHHHHHTHHHHHHTHHHHHHH
T ss_pred cchHHHHHHHHHHHHCcCHHHeEEEEEEEcCCCcEEeeeeccee----ecccchhhhhhhcchhhhHHHHHHHHHHHHHH
Confidence 58999999999999999999999988899999999999999999 99999999888777777888888888888999
Q ss_pred hcCCcchHHHHHHHHHHHHHHHcCCCCCcEEEEEEeecCCCCCCCCeEEEEeEEEeCCeEEEecCCCCCHHHHHHHHHHH
Q 019990 238 ARKLSSALSAASSACDHIRDWVLGTPKGTWVSMGVYSDGSYGIPEGLIYSFPVTCEKGEWSIVKGLKVDEFSRAKMDATA 317 (332)
Q Consensus 238 ~~g~~~~~~~a~a~~~~i~~~~~~~~~~~i~~~~v~~~g~yg~~~~~~~s~Pv~~~~G~~~~~~~~~l~~~E~~~l~~s~ 317 (332)
.++.+++.+.+.+++..+.+|+.+ +++.++|++++++|+||+++++|||+||++++|.|+++.+++||++|+++|++|+
T Consensus 78 ~~~~~~~~~~~~a~~~~~~~~i~~-~~~~~~~~s~~~~g~yg~~~gi~fS~Pv~ig~~gve~v~~l~L~~~e~~~l~~s~ 156 (171)
T d1b8pa2 78 ARGVSSAASAANAAIDHIHDWVLG-TAGKWTTMGIPSDGSYGIPEGVIFGFPVTTENGEYKIVQGLSIDAFSQERINVTL 156 (171)
T ss_dssp HHSSCCHHHHHHHHHHHHHHHHHC-CTTCCEEEEEECCSGGGCCTTCEEEEEEEEETTEEEECCCCCCCHHHHHHHHHHH
T ss_pred HHhhhhhhhhhHHHHHHHHHHHhC-CCccceeEEEEeccccccccceEEEEEEEEeCCeEEEEeCCCCCHHHHHHHHHHH
Confidence 999888887777777788888887 5678999999999999999999999999999666666667999999999999999
Q ss_pred HHHHHHHHHHhhhh
Q 019990 318 EELAEEKTLAYSCL 331 (332)
Q Consensus 318 ~~i~~~~~~~~~~~ 331 (332)
++|+++++.+.+.|
T Consensus 157 ~~L~~e~~~v~~ll 170 (171)
T d1b8pa2 157 NELLEEQNGVQHLL 170 (171)
T ss_dssp HHHHHHHHHHGGGG
T ss_pred HHHHHHHHHHHHhc
Confidence 99999999888766
|
| >d1y6ja2 d.162.1.1 (A:149-317) Lactate dehydrogenase {Clostridium thermocellum [TaxId: 1515]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: LDH C-terminal domain-like superfamily: LDH C-terminal domain-like family: Lactate & malate dehydrogenases, C-terminal domain domain: Lactate dehydrogenase species: Clostridium thermocellum [TaxId: 1515]
Probab=100.00 E-value=5.9e-33 Score=230.74 Aligned_cols=161 Identities=23% Similarity=0.300 Sum_probs=139.1
Q ss_pred ecccHHHHHHHHHHHcCCCCCCeeeeEEEecCCCceeecccCcccccCCCCcchhhhcccc-----ccchhHHHHHHHhh
Q 019990 157 TRLDHNRAMGQISERLKVHVSDVKNVIIWGNHSSTQYPDVNHATVTTSKGEKPVREAVADD-----NWLNTEFITTVQQR 231 (332)
Q Consensus 157 t~l~~~r~~~~~a~~~~v~~~~v~~~~V~G~hg~~~v~~~s~~~v~~~~~~~p~~~~~~~~-----~~~~~~~~~~v~~~ 231 (332)
|.||+.|+++++|+++|++|.+|+++ |||+||++++|+||++++ +|.|+.+++.+. .+..+++.++++++
T Consensus 1 T~LDs~R~~~~la~~lgv~~~~V~~~-ViG~Hg~t~vp~~s~~~i----~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 75 (169)
T d1y6ja2 1 TVLDSIRFRYLLSEKLGVDVKNVHGY-IIGEHGDSQLPLWSCTHI----AGKNINEYIDDPKCNFTEEDKKKIAEDVKTA 75 (169)
T ss_dssp THHHHHHHHHHHHTTTTCCTTTEECC-EEBCSSSSCEECCTTCEE----TTBCSCCC-----------CCHHHHHHHHHH
T ss_pred CccHHHHHHHHHHHHhCcCHHHceEE-EEccCCCCCccCeeeccc----CchhHHHHHHHhhhhhhHHHHHHHHHHHhhh
Confidence 67999999999999999999999987 589999999999999999 999999998764 23567899999999
Q ss_pred HHHHHHhcCCcchHHHHHHHHHHHHHHHcCCCCCcEEEEEEeecCCCCCCCCeEEEEeEEEe-CCeEEEecCCCCCHHHH
Q 019990 232 GAAIIKARKLSSALSAASSACDHIRDWVLGTPKGTWVSMGVYSDGSYGIPEGLIYSFPVTCE-KGEWSIVKGLKVDEFSR 310 (332)
Q Consensus 232 ~~~i~~~~g~~~~~~~a~a~~~~i~~~~~~~~~~~i~~~~v~~~g~yg~~~~~~~s~Pv~~~-~G~~~~~~~~~l~~~E~ 310 (332)
++++++.++.+.+ ++|.++++++.+++. +++.++|++++++|+||++ ++|||+||+++ +|++++++ ++||++|+
T Consensus 76 ~~~i~~~~~s~~~-a~a~~~~~~~~~i~~--~~~~~~~~~~~~~g~yg~~-~i~~s~Pv~lg~~Gv~~i~~-l~Ls~~E~ 150 (169)
T d1y6ja2 76 GATIIKNKGATYY-GIAVSINTIVETLLK--NQNTIRTVGTVINGMYGIE-DVAISLPSIVNSEGVQEVLQ-FNLTPEEE 150 (169)
T ss_dssp HHHHHHHTSCCCH-HHHHHHHHHHHHHHH--TCCCEECCEEEECSBTTBC-SEEEECCEEEETTEEEECCC-CCCCHHHH
T ss_pred hhhhhhhhhhhhh-HHHHHHHHHHHHhcc--CCCCceeeeeeeccccCCc-ccceeeeeEEcCCcEEEEec-CCCCHHHH
Confidence 9999999886664 557777776666555 4578999999999999995 99999999999 99989885 99999999
Q ss_pred HHHHHHHHHHHHHHHHH
Q 019990 311 AKMDATAEELAEEKTLA 327 (332)
Q Consensus 311 ~~l~~s~~~i~~~~~~~ 327 (332)
++|++|++.|++.+++.
T Consensus 151 ~~l~~s~~~lk~~~~~v 167 (169)
T d1y6ja2 151 EALRFSAEQVKKVLNEV 167 (169)
T ss_dssp HHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHh
Confidence 99999999999999875
|
| >d1i0za2 d.162.1.1 (A:161-332) Lactate dehydrogenase {Human (Homo sapiens), heart isoform (H chain) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: LDH C-terminal domain-like superfamily: LDH C-terminal domain-like family: Lactate & malate dehydrogenases, C-terminal domain domain: Lactate dehydrogenase species: Human (Homo sapiens), heart isoform (H chain) [TaxId: 9606]
Probab=100.00 E-value=1.5e-32 Score=229.05 Aligned_cols=163 Identities=19% Similarity=0.213 Sum_probs=142.5
Q ss_pred EeecccHHHHHHHHHHHcCCCCCCeeeeEEEecCCCceeecccCcccccCCCCcchhhhccccc-----cchhHHHHHHH
Q 019990 155 CLTRLDHNRAMGQISERLKVHVSDVKNVIIWGNHSSTQYPDVNHATVTTSKGEKPVREAVADDN-----WLNTEFITTVQ 229 (332)
Q Consensus 155 ~~t~l~~~r~~~~~a~~~~v~~~~v~~~~V~G~hg~~~v~~~s~~~v~~~~~~~p~~~~~~~~~-----~~~~~~~~~v~ 229 (332)
+||.||+.|+++++|+++|+++.+|+.+ |||+||++++|+||++++ +|+|+.+++.+.. +..+++.+.++
T Consensus 1 ~GT~LDs~R~~~~lA~~lgv~~~~V~~~-ViG~Hg~~~vp~~s~~~v----~g~~~~~~~~~~~~~~~~~~~~~i~~~~~ 75 (172)
T d1i0za2 1 SGCNLDSARFRYLMAEKLGIHPSSCHGW-ILGEHGDSSVAVWSGVNV----AGVSLQELNPEMGTDNDSENWKEVHKMVV 75 (172)
T ss_dssp CTTHHHHHHHHHHHHHHHTSCGGGCBCC-EEBCSSTTCEECGGGCEE----TTEEHHHHCTTTTSSSCSSCTHHHHHHHH
T ss_pred CCChHHHHHHHHHHHHHhCcCHHHceEE-EEccCCCcccccHhhcee----CCeeHHHhhhhhccchhHHHHHHHHHHhc
Confidence 4789999999999999999999999876 699999999999999999 9999999876642 24578899999
Q ss_pred hhHHHHHHhcCCcchHHHHHHHHHHHHHHHcCCCCCcEEEEEEeecCCCCCCCCeEEEEeEEEe-CCeEEEecCCCCCHH
Q 019990 230 QRGAAIIKARKLSSALSAASSACDHIRDWVLGTPKGTWVSMGVYSDGSYGIPEGLIYSFPVTCE-KGEWSIVKGLKVDEF 308 (332)
Q Consensus 230 ~~~~~i~~~~g~~~~~~~a~a~~~~i~~~~~~~~~~~i~~~~v~~~g~yg~~~~~~~s~Pv~~~-~G~~~~~~~~~l~~~ 308 (332)
+++.++++.++.+.+ ++|.++++++..++. +++.++|++++++|+||+++++|||+||+++ +|+.+++ +++||++
T Consensus 76 ~~~~~~~~~~~~s~~-a~a~~~~~~~~~~~~--~~~~v~~~~~~~~g~YGi~~~i~~s~Pv~lg~~Gv~~v~-~l~L~~~ 151 (172)
T d1i0za2 76 ESAYEVIKLKGYTNW-AIGLSVADLIESMLK--NLSRIHPVSTMVKGMYGIENEVFLSLPCILNARGLTSVI-NQKLKDD 151 (172)
T ss_dssp HHHHHHHHHHSSCCH-HHHHHHHHHHHHHHT--TCCEEEEEEEECTTSTTCCSCCEEEEEEEEETTEEEEEC-CCCCCHH
T ss_pred cceEEeeecccccch-HHHHHHHHHHHHHhc--CCCcccccceeccCcCCCcCCEEEEEEEEecCCcEEEEe-CCCCCHH
Confidence 999999999986664 567778776665544 4578999999999999998899999999999 8888887 4999999
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 019990 309 SRAKMDATAEELAEEKTL 326 (332)
Q Consensus 309 E~~~l~~s~~~i~~~~~~ 326 (332)
|+++|++|++.|++.++.
T Consensus 152 E~~~l~~Sa~~l~~~~~~ 169 (172)
T d1i0za2 152 EVAQLKKSADTLWDIQKD 169 (172)
T ss_dssp HHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 999999999999887654
|
| >d1ojua2 d.162.1.1 (A:164-331) Lactate dehydrogenase {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: LDH C-terminal domain-like superfamily: LDH C-terminal domain-like family: Lactate & malate dehydrogenases, C-terminal domain domain: Lactate dehydrogenase species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]
Probab=100.00 E-value=1.4e-32 Score=222.10 Aligned_cols=148 Identities=18% Similarity=0.239 Sum_probs=128.3
Q ss_pred eecccHHHHHHHHHHHcCCCCCCeeeeEEEecCCCceeecccCcccccCCCCcchhhhccccccchhHHHHHHHhhHHHH
Q 019990 156 LTRLDHNRAMGQISERLKVHVSDVKNVIIWGNHSSTQYPDVNHATVTTSKGEKPVREAVADDNWLNTEFITTVQQRGAAI 235 (332)
Q Consensus 156 ~t~l~~~r~~~~~a~~~~v~~~~v~~~~V~G~hg~~~v~~~s~~~v~~~~~~~p~~~~~~~~~~~~~~~~~~v~~~~~~i 235 (332)
||.||++||++.+++..+.+.. +++ |+|+||+++||+||.+.+ +|+|. .+++.+.+++++++|
T Consensus 1 Gt~LDsaR~r~~l~~~~~~~v~--~a~-ViGeHGds~vp~~S~~~i----~g~~~----------~~~i~~~v~~~g~eI 63 (152)
T d1ojua2 1 GNQLDSQRLKERLYNAGARNIR--RAW-IIGEHGDSMFVAKSLADF----DGEVD----------WEAVENDVRFVAAEV 63 (152)
T ss_dssp SHHHHHHHHHHHHHHTTCBSCC--CCC-EEBCSSTTCEECGGGCCC----BSCCC----------HHHHHHHHHTTHHHH
T ss_pred CCccHHHHHHHHHHccCCCCcc--eeE-EEecCCCccccccccccc----cCccc----------hhHhHHHHHHHHHHh
Confidence 5889999999999887655442 676 589999999999999999 87653 368999999999999
Q ss_pred HHhcCCcchHHHHHHHHHHHHHHHcCCCCCcEEEEEEeecCCCCCCCCeEEEEeEEEe-CCeEEEecCCCCCHHHHHHHH
Q 019990 236 IKARKLSSALSAASSACDHIRDWVLGTPKGTWVSMGVYSDGSYGIPEGLIYSFPVTCE-KGEWSIVKGLKVDEFSRAKMD 314 (332)
Q Consensus 236 ~~~~g~~~~~~~a~a~~~~i~~~~~~~~~~~i~~~~v~~~g~yg~~~~~~~s~Pv~~~-~G~~~~~~~~~l~~~E~~~l~ 314 (332)
++.||.|. +++|+++++++.+.+. |+++++|+|++++|+||+ +++|+|+||++| +|+ ++++ ++||++|+++|+
T Consensus 64 i~~kG~t~-~gia~a~~~iv~aIl~--d~~~v~pvs~~l~geyG~-~dv~lsvP~vig~~Gv-ei~~-l~L~~~E~~~l~ 137 (152)
T d1ojua2 64 IKRKGATI-FGPAVAIYRMVKAVVE--DTGEIIPTSMILQGEYGI-ENVAVGVPAKLGKNGA-EVAD-IKLSDEEIEKLR 137 (152)
T ss_dssp HHHHSSCC-HHHHHHHHHHHHHHHT--TCCCEEEEEEEEESGGGC-EEEEEEEEEEEETTEE-EECC-CCCCHHHHHHHH
T ss_pred hhhcccee-ccHHHHHHHHHHHHHh--cCCCceeeeEEeccccCC-CCEEEEeEEEECCCce-EEEc-CCCCHHHHHHHH
Confidence 99999775 5778999987776555 468999999999999999 699999999999 997 6885 999999999999
Q ss_pred HHHHHHHHHHHH
Q 019990 315 ATAEELAEEKTL 326 (332)
Q Consensus 315 ~s~~~i~~~~~~ 326 (332)
+|++.|++.++.
T Consensus 138 ~Sa~~ik~~i~~ 149 (152)
T d1ojua2 138 NSAKILRERLEE 149 (152)
T ss_dssp HHHHHHHHHHHT
T ss_pred HHHHHHHHHHHH
Confidence 999999998874
|
| >d1llda2 d.162.1.1 (A:150-319) Lactate dehydrogenase {Bifidobacterium longum, strain am101-2 [TaxId: 216816]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: LDH C-terminal domain-like superfamily: LDH C-terminal domain-like family: Lactate & malate dehydrogenases, C-terminal domain domain: Lactate dehydrogenase species: Bifidobacterium longum, strain am101-2 [TaxId: 216816]
Probab=100.00 E-value=1.7e-32 Score=228.25 Aligned_cols=160 Identities=21% Similarity=0.234 Sum_probs=141.7
Q ss_pred ecccHHHHHHHHHHHcCCCCCCeeeeEEEecCCCceeecccCcccccCCCCcchhhhcccc------ccchhHHHHHHHh
Q 019990 157 TRLDHNRAMGQISERLKVHVSDVKNVIIWGNHSSTQYPDVNHATVTTSKGEKPVREAVADD------NWLNTEFITTVQQ 230 (332)
Q Consensus 157 t~l~~~r~~~~~a~~~~v~~~~v~~~~V~G~hg~~~v~~~s~~~v~~~~~~~p~~~~~~~~------~~~~~~~~~~v~~ 230 (332)
|.||+.|+++++|+++|+++++|+++ |||+||++++|+||++++ +|+|+.+++... .|..+++.+++++
T Consensus 1 T~LDs~R~~~~lA~~l~v~~~~V~~~-ViG~Hg~~~vp~~s~~~v----~g~~~~~~~~~~~~~~~~~~~~~~i~~~v~~ 75 (170)
T d1llda2 1 TNLDSARLRFLIAQQTGVNVKNVHAY-IAGEHGDSEVPLWESATI----GGVPMSDWTPLPGHDPLDADKREEIHQEVKN 75 (170)
T ss_dssp THHHHHHHHHHHHHHHTCCGGGEECC-EEBSSSTTCEECTTSCEE----TTEEGGGCCCCTTCCCCCHHHHHHHHHHHHH
T ss_pred CchHHHHHHHHHHHHHCcCHHHeEEE-EEcCCCCCcccchhhccc----CCCchhhhcccccccccchhhHHHHHHHHhh
Confidence 67999999999999999999999987 699999999999999999 999999887532 3456789999999
Q ss_pred hHHHHHHhcCCcchHHHHHHHHHHHHHHHcCCCCCcEEEEEEeecCCCCCCCCeEEEEeEEEe-CCeEEEecCCCCCHHH
Q 019990 231 RGAAIIKARKLSSALSAASSACDHIRDWVLGTPKGTWVSMGVYSDGSYGIPEGLIYSFPVTCE-KGEWSIVKGLKVDEFS 309 (332)
Q Consensus 231 ~~~~i~~~~g~~~~~~~a~a~~~~i~~~~~~~~~~~i~~~~v~~~g~yg~~~~~~~s~Pv~~~-~G~~~~~~~~~l~~~E 309 (332)
++++|++.||.+++ ++|.++++++.+++. +++.+++++++++|+||. .++|||+||+++ +|++++++ ++||++|
T Consensus 76 ~g~~i~~~kg~t~~-~~a~~~~~~~~~i~~--~~~~~~~~~~~~~~~~g~-~~i~~s~P~~lg~~Gv~~i~~-l~L~~~E 150 (170)
T d1llda2 76 AAYKIINGKGATNY-AIGMSGVDIIEAVLH--DTNRILPVSSMLKDFHGI-SDICMSVPTLLNRQGVNNTIN-TPVSDKE 150 (170)
T ss_dssp HHHHHHTSCCSCCH-HHHHHHHHHHHHHHT--TCCEEEEEEEECSSBTTB-CSSEEEEEEEEETTEEECCSC-CCCCHHH
T ss_pred hhhHHHhhhccchh-hhHHHHHHHHHHHHc--CCCceeeeeccccCccCC-CCeeEeeccEEcCCeeEEEec-CCCCHHH
Confidence 99999999997764 557777777776665 357899999999999998 699999999999 99999885 9999999
Q ss_pred HHHHHHHHHHHHHHHHH
Q 019990 310 RAKMDATAEELAEEKTL 326 (332)
Q Consensus 310 ~~~l~~s~~~i~~~~~~ 326 (332)
+++|++|++.||+.+++
T Consensus 151 ~~~l~~sa~~lk~~~~~ 167 (170)
T d1llda2 151 LAALKRSAETLKETAAQ 167 (170)
T ss_dssp HHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 99999999999988764
|
| >d1hyea2 d.162.1.1 (A:146-313) MJ0490, lactate/malate dehydrogenase {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: LDH C-terminal domain-like superfamily: LDH C-terminal domain-like family: Lactate & malate dehydrogenases, C-terminal domain domain: MJ0490, lactate/malate dehydrogenase species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=100.00 E-value=7.1e-33 Score=230.14 Aligned_cols=165 Identities=21% Similarity=0.265 Sum_probs=140.7
Q ss_pred eecccHHHHHHHHHHHcCCCCCCeeeeEEEecCCCceeecccCcccccCCCCcchhhhccccccchhHHHHHHHhhHHHH
Q 019990 156 LTRLDHNRAMGQISERLKVHVSDVKNVIIWGNHSSTQYPDVNHATVTTSKGEKPVREAVADDNWLNTEFITTVQQRGAAI 235 (332)
Q Consensus 156 ~t~l~~~r~~~~~a~~~~v~~~~v~~~~V~G~hg~~~v~~~s~~~v~~~~~~~p~~~~~~~~~~~~~~~~~~v~~~~~~i 235 (332)
||.||+.||++++|+++|+++.+|+++ |||+||++++|+||++++ +|+|+.++.....+..+++.++++++++++
T Consensus 2 GT~LDs~R~~~~lA~~l~v~~~~V~~~-ViG~Hg~~~vp~~s~~~i----~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 76 (168)
T d1hyea2 2 GTHLDSLRFKVAIAKFFGVHIDEVRTR-IIGEHGDSMVPLLSATSI----GGIPIQKFERFKELPIDEIIEDVKTKGEQI 76 (168)
T ss_dssp TTHHHHHHHHHHHHHHHTCCGGGEECC-EEECSSTTEEECGGGCEE----TTEEGGGCGGGGGCCHHHHHHHHHHHTTSC
T ss_pred CchHHHHHHHHHHHHHHCcCHHHeEEE-EEcCCCCccccchhheeE----CCEecccccccchhhhhhHHHHHhhhHHHH
Confidence 689999999999999999999999987 689999999999999999 999999988776666788999999999999
Q ss_pred HHhcCCcchHHHHHHHHHHHHHHHcCCCCCcEEEEEEeecCCCCCCCCeEEEEeEEEe-CCeEEEecCCCCCHHHHHHHH
Q 019990 236 IKARKLSSALSAASSACDHIRDWVLGTPKGTWVSMGVYSDGSYGIPEGLIYSFPVTCE-KGEWSIVKGLKVDEFSRAKMD 314 (332)
Q Consensus 236 ~~~~g~~~~~~~a~a~~~~i~~~~~~~~~~~i~~~~v~~~g~yg~~~~~~~s~Pv~~~-~G~~~~~~~~~l~~~E~~~l~ 314 (332)
++.|+.+++. ++.+++.++..++.+ ++.++++++++.|+|+.++++|||+||+++ +|++++++ ++||++|+++|+
T Consensus 77 ~~~k~~~~~~-~a~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~v~~s~Pv~lg~~Gv~~i~~-l~Ls~~E~~~l~ 152 (168)
T d1hyea2 77 IRLKGGSEFG-PAAAILNVVRCIVNN--EKRLLTLSAYVDGEFDGIRDVCIGVPVKIGRDGIEEVVS-IELDKDEIIAFR 152 (168)
T ss_dssp CC------CC-HHHHHHHHHHHHHTT--CCEEEEEEEEEESSSSSCEEEEEEEEEEEETTEEEEECC-CCCCHHHHHHHH
T ss_pred HHhccCcccc-chhhhhHHHHhhhcc--CCCeEEEEEEEecccCCcCCEEEeeceEEcCCcEEEEec-CCCCHHHHHHHH
Confidence 9988876654 456666666666553 478999999999998777899999999999 99999995 999999999999
Q ss_pred HHHHHHHHHHHHHhh
Q 019990 315 ATAEELAEEKTLAYS 329 (332)
Q Consensus 315 ~s~~~i~~~~~~~~~ 329 (332)
+|++.|++.++.+.+
T Consensus 153 ~Sa~~lk~~~~~~k~ 167 (168)
T d1hyea2 153 KSAEIIKKYCEEVKN 167 (168)
T ss_dssp HHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHhc
Confidence 999999999998764
|
| >d1ez4a2 d.162.1.1 (A:163-334) Lactate dehydrogenase {Lactobacillus pentosus [TaxId: 1589]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: LDH C-terminal domain-like superfamily: LDH C-terminal domain-like family: Lactate & malate dehydrogenases, C-terminal domain domain: Lactate dehydrogenase species: Lactobacillus pentosus [TaxId: 1589]
Probab=99.98 E-value=3.4e-32 Score=226.66 Aligned_cols=166 Identities=20% Similarity=0.322 Sum_probs=145.2
Q ss_pred ecccHHHHHHHHHHHcCCCCCCeeeeEEEecCCCceeecccCcccccCCCCcchhhhccccccc---hhHHHHHHHhhHH
Q 019990 157 TRLDHNRAMGQISERLKVHVSDVKNVIIWGNHSSTQYPDVNHATVTTSKGEKPVREAVADDNWL---NTEFITTVQQRGA 233 (332)
Q Consensus 157 t~l~~~r~~~~~a~~~~v~~~~v~~~~V~G~hg~~~v~~~s~~~v~~~~~~~p~~~~~~~~~~~---~~~~~~~v~~~~~ 233 (332)
|.||+.|+++++|+++|++|.+|+.+ |||+||++++|+||++++ +|.|+.+++.+..|. ..++.+.++++++
T Consensus 1 T~LD~~R~~~~lA~~l~v~~~~V~~~-ViG~Hg~t~vp~~s~~~i----~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 75 (171)
T d1ez4a2 1 TSLDSSRLRVALGKQFNVDPRSVDAY-IMGEHGDSEFAAYSTATI----GTRPVRDVAKEQGVSDDDLAKLEDGVRNKAY 75 (171)
T ss_dssp THHHHHHHHHHHHHHHTCCGGGEECC-EESSSSSSCEECGGGCEE----TTEEHHHHHHHTTCCHHHHHHHHHHHHHHHH
T ss_pred CchHHHHHHHHHHHHHCcCHHHeEEE-EEccCCCccccccccccc----CCccceeecccccccchhhhhheeehhhhhH
Confidence 67999999999999999999999986 689999999999999999 999999887665432 3567788889999
Q ss_pred HHHHhcCCcchHHHHHHHHHHHHHHHcCCCCCcEEEEEEeecCCCCCCCCeEEEEeEEEe-CCeEEEecCCCCCHHHHHH
Q 019990 234 AIIKARKLSSALSAASSACDHIRDWVLGTPKGTWVSMGVYSDGSYGIPEGLIYSFPVTCE-KGEWSIVKGLKVDEFSRAK 312 (332)
Q Consensus 234 ~i~~~~g~~~~~~~a~a~~~~i~~~~~~~~~~~i~~~~v~~~g~yg~~~~~~~s~Pv~~~-~G~~~~~~~~~l~~~E~~~ 312 (332)
++++.||.+. +++|.++++++. ++.+ +++.++|++++++|+||+ +++|||+||+++ +|++++++ ++||++|+++
T Consensus 76 ~i~~~k~s~~-~a~a~~~~~~~~-~i~~-~~~~~~~~~~~~~~~~g~-~~~~~S~Pv~lg~~Gv~~v~~-l~Ls~~E~~~ 150 (171)
T d1ez4a2 76 DIINLKGATF-YGIGTALMRISK-AILR-DENAVLPVGAYMDGQYGL-NDIYIGTPAIIGGTGLKQIIE-SPLSADELKK 150 (171)
T ss_dssp HHHHHHSCCC-HHHHHHHHHHHH-HHHT-TCCEEEEEEEEEESGGGC-EEEEEEEEEEEETTEEEEECC-CCCCHHHHHH
T ss_pred HHHHhhhhHh-HHHHHHHHHHHH-HHhc-cCCceEEEEEeeccccCc-cceeeeEEEEEcCCcEEEEeC-CCCCHHHHHH
Confidence 9999998665 566788887555 4554 467999999999999998 799999999999 99999985 9999999999
Q ss_pred HHHHHHHHHHHHHHHhhhhC
Q 019990 313 MDATAEELAEEKTLAYSCLN 332 (332)
Q Consensus 313 l~~s~~~i~~~~~~~~~~~~ 332 (332)
|++|++.|+++++.++..|+
T Consensus 151 l~~s~~~l~~~i~~~l~~l~ 170 (171)
T d1ez4a2 151 MQDSAATLKKVLNDGLAELE 170 (171)
T ss_dssp HHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHhc
Confidence 99999999999999987763
|
| >d1a5za2 d.162.1.1 (A:164-333) Lactate dehydrogenase {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: LDH C-terminal domain-like superfamily: LDH C-terminal domain-like family: Lactate & malate dehydrogenases, C-terminal domain domain: Lactate dehydrogenase species: Thermotoga maritima [TaxId: 2336]
Probab=99.98 E-value=7.7e-32 Score=224.70 Aligned_cols=167 Identities=19% Similarity=0.232 Sum_probs=146.2
Q ss_pred eecccHHHHHHHHHHHcCCCCCCeeeeEEEecCCCceeecccCcccccCCCCcchhhhccccc----cchhHHHHHHHhh
Q 019990 156 LTRLDHNRAMGQISERLKVHVSDVKNVIIWGNHSSTQYPDVNHATVTTSKGEKPVREAVADDN----WLNTEFITTVQQR 231 (332)
Q Consensus 156 ~t~l~~~r~~~~~a~~~~v~~~~v~~~~V~G~hg~~~v~~~s~~~v~~~~~~~p~~~~~~~~~----~~~~~~~~~v~~~ 231 (332)
||.||+.||++++|+++|++|.+|+.+ |||+||++++|+||++++ +|.|+.+++.... ...+++.+.++.+
T Consensus 1 GT~LDs~R~~~~lA~~l~v~~~~V~~~-ViG~Hg~t~vp~~s~~~v----~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 75 (172)
T d1a5za2 1 GTVLDTARLRTLIAQHCGFSPRSVHVY-VIGEHGDSEVPVWSGAMI----GGIPLQNMCQVCQKCDSKILENFAEKTKRA 75 (172)
T ss_dssp TTHHHHHHHHHHHHHHHTCCGGGEECC-EEBCSSTTCEECGGGCEE----TTEEHHHHHTTSSSCCHHHHHHHHHHHHHH
T ss_pred CCchHHHHHHHHHHHHHCcCHHHeEEE-EEecCCCCcccchhhccc----CCcchhhhhhccccccHHHhhhhHHHHhcc
Confidence 588999999999999999999999987 699999999999999999 9999999876432 2356788889999
Q ss_pred HHHHHHhcCCcchHHHHHHHHHHHHHHHcCCCCCcEEEEEEeecCCCCCCCCeEEEEeEEEe-CCeEEEecCCCCCHHHH
Q 019990 232 GAAIIKARKLSSALSAASSACDHIRDWVLGTPKGTWVSMGVYSDGSYGIPEGLIYSFPVTCE-KGEWSIVKGLKVDEFSR 310 (332)
Q Consensus 232 ~~~i~~~~g~~~~~~~a~a~~~~i~~~~~~~~~~~i~~~~v~~~g~yg~~~~~~~s~Pv~~~-~G~~~~~~~~~l~~~E~ 310 (332)
++++++.++.+.+ +++.++++++.+++.+ ++.+.+++++.+|+||. +++|||+||+++ +|++++++ ++||++|+
T Consensus 76 ~~~i~~~~~~~~~-~~a~a~~~~~~~~~~~--~~~~~~~~~~~~g~~~~-~~v~~s~P~~lg~~Gv~~v~~-l~Ls~~E~ 150 (172)
T d1a5za2 76 AYEIIERKGATHY-AIALAVADIVESIFFD--EKRVLTLSVYLEDYLGV-KDLCISVPVTLGKHGVERILE-LNLNEEEL 150 (172)
T ss_dssp HHHHHHHHSCCCH-HHHHHHHHHHHHHHTT--CCEEEEEEEEESSBTTB-CSEEEEEEEEEETTEEEEECC-CCCCHHHH
T ss_pred ceeEeeccccchh-hHHHHHHHHHHHHHhh--cccceeeeccccccccc-CCeeEeeeEEEcCCceEEEeC-CCCCHHHH
Confidence 9999999987665 4567888777776653 57899999999999998 699999999999 99999995 99999999
Q ss_pred HHHHHHHHHHHHHHHHHhhhhC
Q 019990 311 AKMDATAEELAEEKTLAYSCLN 332 (332)
Q Consensus 311 ~~l~~s~~~i~~~~~~~~~~~~ 332 (332)
++|++|++.|++.++......|
T Consensus 151 ~~l~~sa~~lk~~i~~l~~~~N 172 (172)
T d1a5za2 151 EAFRKSASILKNAINEITAEEN 172 (172)
T ss_dssp HHHHHHHHHHHHHHHHHHTSCC
T ss_pred HHHHHHHHHHHHHHHHHhhccC
Confidence 9999999999999998776554
|
| >d1guza2 d.162.1.1 (A:143-305) Malate dehydrogenase {Chlorobium vibrioforme [TaxId: 1098]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: LDH C-terminal domain-like superfamily: LDH C-terminal domain-like family: Lactate & malate dehydrogenases, C-terminal domain domain: Malate dehydrogenase species: Chlorobium vibrioforme [TaxId: 1098]
Probab=99.98 E-value=3.6e-32 Score=224.47 Aligned_cols=158 Identities=22% Similarity=0.322 Sum_probs=138.6
Q ss_pred cccHHHHHHHHHHHcCCCCCCeeeeEEEecCCCceeecccCcccccCCCCcchhhhccccccchhHHHHHHHhhHHHHHH
Q 019990 158 RLDHNRAMGQISERLKVHVSDVKNVIIWGNHSSTQYPDVNHATVTTSKGEKPVREAVADDNWLNTEFITTVQQRGAAIIK 237 (332)
Q Consensus 158 ~l~~~r~~~~~a~~~~v~~~~v~~~~V~G~hg~~~v~~~s~~~v~~~~~~~p~~~~~~~~~~~~~~~~~~v~~~~~~i~~ 237 (332)
.||+.|+++++|+++|++|.+|+++ |||+||++++|+||++++ +|+|+.+++.++ ..+++.+++++++++|++
T Consensus 3 ~LDs~R~~~~lA~~l~v~~~~V~~~-ViG~Hg~s~vp~~s~~~i----~g~~~~~~~~~~--~~~~~~~~v~~~g~~ii~ 75 (163)
T d1guza2 3 VLDAARFRSFIAMELGVSMQDINAC-VLGGHGDAMVPVVKYTTV----AGIPISDLLPAE--TIDKLVERTRNGGAEIVE 75 (163)
T ss_dssp HHHHHHHHHHHHHHHTCCGGGEECC-EEECSGGGEEECGGGCEE----TTEEHHHHSCHH--HHHHHHHHHHTHHHHHHH
T ss_pred ccHHHHHHHHHHHHHCcCHHHeEEE-EEcCCCCCcccCHhhccc----CCccccccCCHH--HHHHHHHHHHHHHHHHHH
Confidence 6899999999999999999999987 689999999999999999 999999987654 347899999999999998
Q ss_pred hcC-CcchHHHHHHHHHHHHHHHcCCCCCcEEEEEEeecCCCCCCCCeEEEEeEEEe-CCeEEEecCCCCCHHHHHHHHH
Q 019990 238 ARK-LSSALSAASSACDHIRDWVLGTPKGTWVSMGVYSDGSYGIPEGLIYSFPVTCE-KGEWSIVKGLKVDEFSRAKMDA 315 (332)
Q Consensus 238 ~~g-~~~~~~~a~a~~~~i~~~~~~~~~~~i~~~~v~~~g~yg~~~~~~~s~Pv~~~-~G~~~~~~~~~l~~~E~~~l~~ 315 (332)
..| .+++++++.++++ +..++.+ +++.++|++++++|+||+ +++|||+|++++ +|++++++ ++||++|+++|++
T Consensus 76 ~~~kgsa~~a~~~~~~~-~~~~i~~-~~~~~~~~~~~~~~~~g~-~~~~~s~P~~lg~~Gv~~i~~-l~Ls~~E~~~l~~ 151 (163)
T d1guza2 76 HLKQGSAFYAPASSVVE-MVESIVL-DRKRVLPCAVGLEGQYGI-DKTFVGVPVKLGRNGVEQIYE-INLDQADLDLLQK 151 (163)
T ss_dssp HHSSSCCCHHHHHHHHH-HHHHHHT-TCCEEEEEEEEEESGGGC-EEEEEEEEEEEETTEEEEECC-CCCCHHHHHHHHH
T ss_pred HhcCCCcchhHHHHHHH-HHHheec-cCCCEEEEeeeeccccCC-CCcEEEEeeEEcCCeeEEEec-CCCCHHHHHHHHH
Confidence 643 3444566777776 5556666 468999999999999999 699999999999 99999995 9999999999999
Q ss_pred HHHHHHHHHHH
Q 019990 316 TAEELAEEKTL 326 (332)
Q Consensus 316 s~~~i~~~~~~ 326 (332)
|++.|++.++.
T Consensus 152 sa~~l~~~i~~ 162 (163)
T d1guza2 152 SAKIVDENCKM 162 (163)
T ss_dssp HHHHHHHHHHT
T ss_pred HHHHHHHHHhh
Confidence 99999998864
|
| >d1uxja2 d.162.1.1 (A:144-307) Malate dehydrogenase {Chloroflexus aurantiacus [TaxId: 1108]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: LDH C-terminal domain-like superfamily: LDH C-terminal domain-like family: Lactate & malate dehydrogenases, C-terminal domain domain: Malate dehydrogenase species: Chloroflexus aurantiacus [TaxId: 1108]
Probab=99.98 E-value=4e-32 Score=224.44 Aligned_cols=159 Identities=24% Similarity=0.347 Sum_probs=139.5
Q ss_pred cccHHHHHHHHHHHcCCCCCCeeeeEEEecCCCceeecccCcccccCCCCcchhhhccccccchhHHHHHHHhhHHHHHH
Q 019990 158 RLDHNRAMGQISERLKVHVSDVKNVIIWGNHSSTQYPDVNHATVTTSKGEKPVREAVADDNWLNTEFITTVQQRGAAIIK 237 (332)
Q Consensus 158 ~l~~~r~~~~~a~~~~v~~~~v~~~~V~G~hg~~~v~~~s~~~v~~~~~~~p~~~~~~~~~~~~~~~~~~v~~~~~~i~~ 237 (332)
.||+.|+++++|+++|++|.+|+++ |||+||++++|+||++++ +|.|+.+++.+. ..+++.+.+++++++|++
T Consensus 3 ~LD~~R~~~~lA~~l~v~~~~V~~~-ViG~Hg~~~v~~~s~~~i----~g~~~~~~~~~~--~~~~~~~~v~~~g~~ii~ 75 (164)
T d1uxja2 3 VLDAARYRTFIAMEAGVSVKDVQAM-LMGGHGDEMVPLPRFSTI----SGIPVSEFIAPD--RLAQIVERTRKGGGEIVN 75 (164)
T ss_dssp HHHHHHHHHHHHHHHTCCGGGEEEC-CEECSGGGEECCGGGEEE----TTEEGGGTSCHH--HHHHHHHHHHTHHHHHHH
T ss_pred ccHHHHHHHHHHHHHCcCHHHeEEE-EEcCCCCceeeeeeeeec----CCCchhhccchh--hHHHHHHHHHHHHHHHHH
Confidence 5899999999999999999999987 689999999999999999 999999887654 457899999999999987
Q ss_pred hcCC-cchHHHHHHHHHHHHHHHcCCCCCcEEEEEEeecCCCCCCCCeEEEEeEEEe-CCeEEEecCCCCCHHHHHHHHH
Q 019990 238 ARKL-SSALSAASSACDHIRDWVLGTPKGTWVSMGVYSDGSYGIPEGLIYSFPVTCE-KGEWSIVKGLKVDEFSRAKMDA 315 (332)
Q Consensus 238 ~~g~-~~~~~~a~a~~~~i~~~~~~~~~~~i~~~~v~~~g~yg~~~~~~~s~Pv~~~-~G~~~~~~~~~l~~~E~~~l~~ 315 (332)
.++. ++++++++++++ +.+|+.+ +++.++|++++++|+||+ +++|||+||++| +|++++++ ++||++|+++|++
T Consensus 76 ~~~kgs~~~a~a~a~~~-i~~~i~~-~~~~~~~~~~~~~g~ygi-~~~~~s~P~~ig~~Gv~~v~~-l~L~~~E~~~l~~ 151 (164)
T d1uxja2 76 LLKTGSAYYAPAAATAQ-MVEAVLK-DKKRVMPVAAYLTGQYGL-NDIYFGVPVILGAGGVEKILE-LPLNEEEMALLNA 151 (164)
T ss_dssp HHSSSCCCHHHHHHHHH-HHHHHHT-TCCEEEEEEEEEESGGGC-EEEEEEEEEEEETTEEEEECC-CCCCHHHHHHHHH
T ss_pred HHhcCcccchHHHHHHH-HHHHHhC-CCCceeeeeeeeccccCC-CCceEEECeEEeCCeeEEEeC-CCCCHHHHHHHHH
Confidence 5432 445677788876 5556665 467899999999999999 689999999999 99999995 9999999999999
Q ss_pred HHHHHHHHHHHH
Q 019990 316 TAEELAEEKTLA 327 (332)
Q Consensus 316 s~~~i~~~~~~~ 327 (332)
|++.|+++++..
T Consensus 152 s~~~lk~~i~~l 163 (164)
T d1uxja2 152 SAKAVRATLDTL 163 (164)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHhh
Confidence 999999999864
|
| >d1hyha2 d.162.1.1 (A:167-329) L-2-hydroxyisocapronate dehydrogenase, L-HICDH {Lactobacillus confusus [TaxId: 1583]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: LDH C-terminal domain-like superfamily: LDH C-terminal domain-like family: Lactate & malate dehydrogenases, C-terminal domain domain: L-2-hydroxyisocapronate dehydrogenase, L-HICDH species: Lactobacillus confusus [TaxId: 1583]
Probab=99.98 E-value=1.2e-31 Score=221.49 Aligned_cols=162 Identities=15% Similarity=0.171 Sum_probs=138.1
Q ss_pred eecccHHHHHHHHHHHcCCCCCCeeeeEEEecCCCceeecccCcccccCCCCcchhhhccccccchhHHHHHHHhhHHHH
Q 019990 156 LTRLDHNRAMGQISERLKVHVSDVKNVIIWGNHSSTQYPDVNHATVTTSKGEKPVREAVADDNWLNTEFITTVQQRGAAI 235 (332)
Q Consensus 156 ~t~l~~~r~~~~~a~~~~v~~~~v~~~~V~G~hg~~~v~~~s~~~v~~~~~~~p~~~~~~~~~~~~~~~~~~v~~~~~~i 235 (332)
||.||+.||++++|+++|++|++|+++ |||+||+++||+||++++ +|+|+.+++.+++|+.+++.+.+++++++|
T Consensus 1 GT~LDs~R~~~~lA~~l~v~~~~V~~~-ViG~Hg~~~vp~~s~~~v----~g~~~~~~~~~~~~~~~~i~~~v~~~~~~i 75 (163)
T d1hyha2 1 GTLLDTARMQRAVGEAFDLDPRSVSGY-NLGEHGNSQFVAWSTVRV----MGQPIVTLADAGDIDLAAIEEEARKGGFTV 75 (163)
T ss_dssp TTHHHHHHHHHHHHHHHTCCGGGCBCC-EEBCTTTTCEECTTTCEE----TTEEGGGC-----CCHHHHHHHHHHHHHHH
T ss_pred CCchHHHHHHHHHHHHhCcCHHHeEEE-EEcCCCCcCccceecccc----CCchHHHHhccccchHHHHHHHHhhhHHHH
Confidence 588999999999999999999999987 689999999999999999 999999999888888899999999999999
Q ss_pred HHhcCCcchHHHHHHHHHHHHHHHcCCCCCcEEEEEEeecCCCCCCCCeEEEEeEEEe-CCeEEEecCCCCCHHHHHHHH
Q 019990 236 IKARKLSSALSAASSACDHIRDWVLGTPKGTWVSMGVYSDGSYGIPEGLIYSFPVTCE-KGEWSIVKGLKVDEFSRAKMD 314 (332)
Q Consensus 236 ~~~~g~~~~~~~a~a~~~~i~~~~~~~~~~~i~~~~v~~~g~yg~~~~~~~s~Pv~~~-~G~~~~~~~~~l~~~E~~~l~ 314 (332)
++.||.+++ ++++++..++.++.. ++..+.+++.+.. +.++|||+||+++ +|+.++++ ++||++|+++|+
T Consensus 76 ~~~kg~~~~-~~a~~~~~~~~~~~~--~~~~~~~~s~~~~-----~~~~~~s~Pv~ig~~Gv~~v~~-l~Ls~~E~~~l~ 146 (163)
T d1hyha2 76 LNGKGYTSY-GVATSAIRIAKAVMA--DAHAELVVSNRRD-----DMGMYLSYPAIIGRDGVLAETT-LDLTTDEQEKLL 146 (163)
T ss_dssp HHHHSSCCH-HHHHHHHHHHHHHHT--TCCEEEEEEEECT-----TTCSEEEEEEEEETTEEEEECC-CCCCHHHHHHHH
T ss_pred HHHHHhHHH-hHHHHhhHHHHHhcC--CccceeeeceecC-----CcceEEEeEEEEcCCeEEEEec-CCCCHHHHHHHH
Confidence 999997765 556777766655444 4567888877643 2578999999999 99888885 999999999999
Q ss_pred HHHHHHHHHHHHHhhhh
Q 019990 315 ATAEELAEEKTLAYSCL 331 (332)
Q Consensus 315 ~s~~~i~~~~~~~~~~~ 331 (332)
+|++.|+++++.+++.|
T Consensus 147 ~s~~~l~~~~~~~~~~l 163 (163)
T d1hyha2 147 QSRDYIQQRFDEIVDTL 163 (163)
T ss_dssp HHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHhhC
Confidence 99999999999998765
|
| >d1ldma2 d.162.1.1 (A:161-329) Lactate dehydrogenase {Dogfish (Squalus acanthias) [TaxId: 7797]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: LDH C-terminal domain-like superfamily: LDH C-terminal domain-like family: Lactate & malate dehydrogenases, C-terminal domain domain: Lactate dehydrogenase species: Dogfish (Squalus acanthias) [TaxId: 7797]
Probab=99.97 E-value=7.2e-32 Score=224.25 Aligned_cols=166 Identities=17% Similarity=0.187 Sum_probs=139.1
Q ss_pred EeecccHHHHHHHHHHHcCCCCCCeeeeEEEecCCCceeecccCcccccCCCCcchhhhcccc--ccchhHHHHHHHhhH
Q 019990 155 CLTRLDHNRAMGQISERLKVHVSDVKNVIIWGNHSSTQYPDVNHATVTTSKGEKPVREAVADD--NWLNTEFITTVQQRG 232 (332)
Q Consensus 155 ~~t~l~~~r~~~~~a~~~~v~~~~v~~~~V~G~hg~~~v~~~s~~~v~~~~~~~p~~~~~~~~--~~~~~~~~~~v~~~~ 232 (332)
+||.||+.|+++++|+++|++|.+|+.+ |||+||++++|+||++.+ ++.|+.++.... .+...++.+..+.++
T Consensus 1 sGT~LDs~R~~~~lA~~l~v~~~~V~~~-ViG~Hg~~~v~~~s~~~i----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 75 (169)
T d1ldma2 1 SGCNLDSARFRYLMGERLGVHSCSCHGW-VIGEHGDSVPSVWSGMNV----ASIKLHPLDGTNKDKQDWKKLHKDVVDSA 75 (169)
T ss_dssp CTTHHHHHHHHHHHHHHHTSCGGGCBCC-BCBCSSTTCCBCGGGCEE----TTEESHHHHSSTTTTTTTTHHHHHHHHHH
T ss_pred CCchHHHHHHHHHHHHHHCcCHHHeEEE-EEcCCCccchhhhhhccc----CCcchHHhhcccchhhhcceeEEEecCce
Confidence 4789999999999999999999999987 689999999999999999 999999886543 223446666777888
Q ss_pred HHHHHhcCCcchHHHHHHHHHHHHHHHcCCCCCcEEEEEEeecCCCCCCCCeEEEEeEEEe-CCeEEEecCCCCCHHHHH
Q 019990 233 AAIIKARKLSSALSAASSACDHIRDWVLGTPKGTWVSMGVYSDGSYGIPEGLIYSFPVTCE-KGEWSIVKGLKVDEFSRA 311 (332)
Q Consensus 233 ~~i~~~~g~~~~~~~a~a~~~~i~~~~~~~~~~~i~~~~v~~~g~yg~~~~~~~s~Pv~~~-~G~~~~~~~~~l~~~E~~ 311 (332)
.++...++.+. +++|.++++++.+ +.. +++.++|++++++|+||++.++|||+||++| +|++++++ ++||++|++
T Consensus 76 ~~~~~~~~s~~-~a~a~~~~~~~~~-~~~-~~~~~~~~~~~~~g~ygi~~~i~~s~Pv~lg~~Gv~~v~~-l~L~~~E~~ 151 (169)
T d1ldma2 76 YEVIKLKGYTS-WAIGLSVADLAET-IMK-NLCRVHPVSTMVKDFYGIKDNVFLSLPCVLNDHGISNIVK-MKLKPNEEQ 151 (169)
T ss_dssp HHHHHHHSSCC-HHHHHHHHHHHHH-HHT-TCCEEEEEEEECTTSTTCCSCCEEEEEEEEETTEEEEECC-CCCCHHHHH
T ss_pred EEEeccccchh-hHHHHHHhhhhhe-ecC-CCCceeeeeeecccccCCcCCceEEeeEEEcCCcEEEEec-CCCCHHHHH
Confidence 88888888654 5667778766655 443 4578999999999999998899999999999 89888885 999999999
Q ss_pred HHHHHHHHHHHHHHHHhhh
Q 019990 312 KMDATAEELAEEKTLAYSC 330 (332)
Q Consensus 312 ~l~~s~~~i~~~~~~~~~~ 330 (332)
+|++|++.|++ +.+.++|
T Consensus 152 ~l~~s~~~l~~-~~k~lkf 169 (169)
T d1ldma2 152 QLQKSATTLWD-IQKDLKF 169 (169)
T ss_dssp HHHHHHHHHHH-HHHTCCC
T ss_pred HHHHHHHHHHH-HHHhcCC
Confidence 99999999974 4444443
|
| >d1pzga2 d.162.1.1 (A:164-334) Lactate dehydrogenase {Toxoplasma gondii [TaxId: 5811]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: LDH C-terminal domain-like superfamily: LDH C-terminal domain-like family: Lactate & malate dehydrogenases, C-terminal domain domain: Lactate dehydrogenase species: Toxoplasma gondii [TaxId: 5811]
Probab=99.97 E-value=2.5e-31 Score=221.93 Aligned_cols=163 Identities=20% Similarity=0.313 Sum_probs=133.5
Q ss_pred eecccHHHHHHHHHHHcCCCCCCeeeeEEEecCCCceeecccCcccccCCCCcchhhhccccccc---hhHHHHHHHhhH
Q 019990 156 LTRLDHNRAMGQISERLKVHVSDVKNVIIWGNHSSTQYPDVNHATVTTSKGEKPVREAVADDNWL---NTEFITTVQQRG 232 (332)
Q Consensus 156 ~t~l~~~r~~~~~a~~~~v~~~~v~~~~V~G~hg~~~v~~~s~~~v~~~~~~~p~~~~~~~~~~~---~~~~~~~v~~~~ 232 (332)
+|.||+.|+++++|+++|++|.+|+.+ |||+||++++|+||++++ +|.|+.+++.+..|. ..+..+..+.++
T Consensus 1 ~c~LDs~R~~~~lA~~l~v~~~~V~~~-ViG~Hg~t~vp~~S~~~i----~g~~l~~~~~~~~~~~~~~~~~~~~~~~~g 75 (174)
T d1pzga2 1 ACMLDSGRFRRYVADALSVSPRDVQAT-VIGTHGDCMVPLVRYITV----NGYPIQKFIKDGVVTEKQLEEIAEHTKVSG 75 (174)
T ss_dssp CHHHHHHHHHHHHHHHHTSCGGGEECC-EEBCSSTTCEECGGGCEE----TTEEHHHHHHTTSSCHHHHHHHHHHHHHHH
T ss_pred CcccHHHHHHHHHHHHhCcCHHHcEEE-EEccCCCccccceeeeeE----CCEechhhccccchhhhhhhhhhheeeccc
Confidence 589999999999999999999999986 799999999999999999 999999988765433 334444555666
Q ss_pred HHHHHhcCC-cchHHHHHHHHHHHHHHHcCCCCCcEEEEEEeecCCCCCCCCeEEEEeEEEe-CCeEEEecCCCCCHHHH
Q 019990 233 AAIIKARKL-SSALSAASSACDHIRDWVLGTPKGTWVSMGVYSDGSYGIPEGLIYSFPVTCE-KGEWSIVKGLKVDEFSR 310 (332)
Q Consensus 233 ~~i~~~~g~-~~~~~~a~a~~~~i~~~~~~~~~~~i~~~~v~~~g~yg~~~~~~~s~Pv~~~-~G~~~~~~~~~l~~~E~ 310 (332)
.+++..++. +++++++.++++++.. +.+ +++.++|+++.++|+||++ ++|||+||++| +|+.+++ +++||++|+
T Consensus 76 ~~~~~~~~~gst~~~~a~a~~~~~~~-i~~-~~~~~~~~s~~~~~~yGi~-~v~~s~Pv~ig~~Gi~~v~-~l~l~~~E~ 151 (174)
T d1pzga2 76 GEIVRFLGQGSAYYAPAASAVAMATS-FLN-DEKRVIPCSVYCNGEYGLK-DMFIGLPAVIGGAGIERVI-ELELNEEEK 151 (174)
T ss_dssp HHHHHHHSSSCCCHHHHHHHHHHHHH-HHT-TCCEEEEEEEEEESGGGCE-EEEEEEEEEEETTEEEEEC-CCCCCHHHH
T ss_pred eeEeeeecccchhhhhHHHHHHHHHh-hcc-cCCceEEeeeccccccCCC-CceeeeeeEEcCCcEEEEe-CCCCCHHHH
Confidence 666654332 3345667888765554 554 4688999999999999994 79999999999 8888887 599999999
Q ss_pred HHHHHHHHHHHHHHHHH
Q 019990 311 AKMDATAEELAEEKTLA 327 (332)
Q Consensus 311 ~~l~~s~~~i~~~~~~~ 327 (332)
++|++|+++|++..+.+
T Consensus 152 ~~l~~s~~~l~~~~~~v 168 (174)
T d1pzga2 152 KQFQKSVDDVMALNKAV 168 (174)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 99999999999876654
|
| >d2ldxa2 d.162.1.1 (A:160-331) Lactate dehydrogenase {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: LDH C-terminal domain-like superfamily: LDH C-terminal domain-like family: Lactate & malate dehydrogenases, C-terminal domain domain: Lactate dehydrogenase species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.97 E-value=6.1e-31 Score=219.20 Aligned_cols=161 Identities=17% Similarity=0.167 Sum_probs=139.1
Q ss_pred EeecccHHHHHHHHHHHcCCCCCCeeeeEEEecCCCceeecccCcccccCCCCcchhhhccccc-----cchhHHHHHHH
Q 019990 155 CLTRLDHNRAMGQISERLKVHVSDVKNVIIWGNHSSTQYPDVNHATVTTSKGEKPVREAVADDN-----WLNTEFITTVQ 229 (332)
Q Consensus 155 ~~t~l~~~r~~~~~a~~~~v~~~~v~~~~V~G~hg~~~v~~~s~~~v~~~~~~~p~~~~~~~~~-----~~~~~~~~~v~ 229 (332)
+||.||+.|+++++|+++|++|.+|+.+ |||+||++++|+||++++ +|.|+.+++.+.. +..+++.+..+
T Consensus 1 tGT~LD~~R~~~~vA~~l~v~~~~V~~~-ViG~Hs~~~ip~~s~~~v----~g~~~~~~~~~~~~~~~~~~~~~i~~~~~ 75 (172)
T d2ldxa2 1 SGCNLDSARFRYLIGEKLGVNPTSCHGW-VLGEHGDSSVPIWSGVNV----AGVTLKSLNPAIGTDKNKQHWKNVHKQVV 75 (172)
T ss_dssp CTTHHHHHHHHHHHHHHHTCCTTSSCCC-EEECSSSCEEECGGGCBS----SCSSSSBSTTTCSCSSSSSSCHHHHHHHH
T ss_pred CCchHHHHHHHHHHHHHhCcCHHHcEEE-EEcCCCCccccceeccee----cCcchhhHHHHhhhhhhhhhhhhhhhhhc
Confidence 4789999999999999999999999976 699999999999999999 9999998765431 23457888888
Q ss_pred hhHHHHHHhcCCcchHHHHHHHHHHHHHHHcCCCCCcEEEEEEeecCCCCCCCCeEEEEeEEEe-CCeEEEecCCCCCHH
Q 019990 230 QRGAAIIKARKLSSALSAASSACDHIRDWVLGTPKGTWVSMGVYSDGSYGIPEGLIYSFPVTCE-KGEWSIVKGLKVDEF 308 (332)
Q Consensus 230 ~~~~~i~~~~g~~~~~~~a~a~~~~i~~~~~~~~~~~i~~~~v~~~g~yg~~~~~~~s~Pv~~~-~G~~~~~~~~~l~~~ 308 (332)
..+.+++..|+.+.+ ++|.+++.++.+++. +++.++|+++.++|+||++.++|||+||+++ +|++++++ ++||++
T Consensus 76 ~~~~~~~~~k~~s~~-~~a~~~~~~~~~~~~--~~~~~~~~~~~~~g~ygi~~~i~~s~Pv~ig~~Gv~~v~~-l~L~~~ 151 (172)
T d2ldxa2 76 EGGYEVLDMKGYTSW-AIGLSVTDLARSILK--NLKRVHPVTTLVKGFHGIKEEVFLSIPCVLGESGITDFVK-VNMTAE 151 (172)
T ss_dssp HHHHHHHHHHSSCCH-HHHHHHHHHHHHHHT--TCCEEEEEEEECTTSTTCCSSCEEEEEEEEETTEEEEEEC-CCCCHH
T ss_pred cceeehhhcccchhH-HHHHHHhHHHHhhcC--CCccceeeeeecccccCCcCCeEEEEEEEEcCCCEEEEec-CCCCHH
Confidence 889999999886665 556777766666555 4588999999999999998899999999999 89889985 999999
Q ss_pred HHHHHHHHHHHHHHHH
Q 019990 309 SRAKMDATAEELAEEK 324 (332)
Q Consensus 309 E~~~l~~s~~~i~~~~ 324 (332)
|+++|++|++.|++.+
T Consensus 152 E~~~l~~s~~~lk~~~ 167 (172)
T d2ldxa2 152 EEGLLKKSADTLWNMQ 167 (172)
T ss_dssp HHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHH
Confidence 9999999999998654
|
| >d1t2da2 d.162.1.1 (A:151-315) Lactate dehydrogenase {Malaria parasite (Plasmodium falciparum) [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: LDH C-terminal domain-like superfamily: LDH C-terminal domain-like family: Lactate & malate dehydrogenases, C-terminal domain domain: Lactate dehydrogenase species: Malaria parasite (Plasmodium falciparum) [TaxId: 5833]
Probab=99.97 E-value=5.8e-31 Score=217.70 Aligned_cols=159 Identities=20% Similarity=0.243 Sum_probs=138.6
Q ss_pred cccHHHHHHHHHHHcCCCCCCeeeeEEEecCCCceeecccCcccccCCCCcchhhhccccccc---hhHHHHHHHhhHHH
Q 019990 158 RLDHNRAMGQISERLKVHVSDVKNVIIWGNHSSTQYPDVNHATVTTSKGEKPVREAVADDNWL---NTEFITTVQQRGAA 234 (332)
Q Consensus 158 ~l~~~r~~~~~a~~~~v~~~~v~~~~V~G~hg~~~v~~~s~~~v~~~~~~~p~~~~~~~~~~~---~~~~~~~v~~~~~~ 234 (332)
.||+.|+++++|+++|++|++|+.+ |||+||++++|+||++++ +|.|+.+...+..|. ..++.+.+++++++
T Consensus 2 ~LD~~R~~~~la~~lgv~~~~V~~~-ViG~Hg~~~vp~~s~~~i----~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 76 (165)
T d1t2da2 2 VLDTSRLKYYISQKLNVCPRDVNAH-IVGAHGNKMVLLKRYITV----GGIPLQEFINNKLISDAELEAIFDRTVNTALE 76 (165)
T ss_dssp HHHHHHHHHHHHHHHTSCGGGEECC-EEBCSSTTCEECGGGCEE----TTEEHHHHHHTTSSCHHHHHHHHHHHHTHHHH
T ss_pred ccHHHHHHHHHHHHHCcCHHHeEEE-EEcCCCCCcccceeeccc----CCcchhhhcccchhhhhhhhhhhhhhhhhhHH
Confidence 5899999999999999999999987 689999999999999999 999999887665442 34577888899999
Q ss_pred HHHhcCCcchHHHHHHHHHHHHHHHcCCCCCcEEEEEEeecCCCCCCCCeEEEEeEEEe-CCeEEEecCCCCCHHHHHHH
Q 019990 235 IIKARKLSSALSAASSACDHIRDWVLGTPKGTWVSMGVYSDGSYGIPEGLIYSFPVTCE-KGEWSIVKGLKVDEFSRAKM 313 (332)
Q Consensus 235 i~~~~g~~~~~~~a~a~~~~i~~~~~~~~~~~i~~~~v~~~g~yg~~~~~~~s~Pv~~~-~G~~~~~~~~~l~~~E~~~l 313 (332)
+++.+|.+++ ++|.+++.++..++. +.+.++|++++++|+||+ .++|||+||+++ +|++++++ ++||++|+++|
T Consensus 77 v~~~~~~~~~-a~a~a~~~~~~~i~~--~~~~~~~~~v~~~g~yg~-~~v~~s~Pv~lg~~Gv~~i~~-l~L~~~E~~~L 151 (165)
T d1t2da2 77 IVNLHASPYV-APAAAIIEMAESYLK--DLKKVLICSTLLEGQYGH-SDIFGGTPVVLGANGVEQVIE-LQLNSEEKAKF 151 (165)
T ss_dssp HHHHTSSCCH-HHHHHHHHHHHHHHT--TCCEEEEEEEEEESGGGC-EEEEEEEEEEEETTEEEEECC-CCCCHHHHHHH
T ss_pred Hhhhccceee-chhHHHHHHHHHHhh--ccccceeeeecccccccc-CCeeEeeeEEEcCCceEEEeC-CCCCHHHHHHH
Confidence 9999997664 557788776665554 457899999999999998 699999999999 99999996 99999999999
Q ss_pred HHHHHHHHHHHHH
Q 019990 314 DATAEELAEEKTL 326 (332)
Q Consensus 314 ~~s~~~i~~~~~~ 326 (332)
++|+++|++..+.
T Consensus 152 ~~s~~~lk~~~~~ 164 (165)
T d1t2da2 152 DEAIAETKRMKAL 164 (165)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhc
Confidence 9999999988654
|
| >d1ldna2 d.162.1.1 (A:163-330) Lactate dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: LDH C-terminal domain-like superfamily: LDH C-terminal domain-like family: Lactate & malate dehydrogenases, C-terminal domain domain: Lactate dehydrogenase species: Bacillus stearothermophilus [TaxId: 1422]
Probab=99.97 E-value=6e-31 Score=218.45 Aligned_cols=162 Identities=20% Similarity=0.289 Sum_probs=138.8
Q ss_pred ecccHHHHHHHHHHHcCCCCCCeeeeEEEecCCCceeecccCcccccCCCCcchhhhcccccc----chhHHHHHHHhhH
Q 019990 157 TRLDHNRAMGQISERLKVHVSDVKNVIIWGNHSSTQYPDVNHATVTTSKGEKPVREAVADDNW----LNTEFITTVQQRG 232 (332)
Q Consensus 157 t~l~~~r~~~~~a~~~~v~~~~v~~~~V~G~hg~~~v~~~s~~~v~~~~~~~p~~~~~~~~~~----~~~~~~~~v~~~~ 232 (332)
|.||+.||+.++|+++|+++.+|+.+ |||+||++++|+||++++ +|.|+.+++.+..+ ..+++.+.++..+
T Consensus 1 T~LDs~R~~~~lA~~l~v~~~~V~~~-ViG~Hg~~~vp~~s~~~v----~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ 75 (168)
T d1ldna2 1 TILDTARFRFLLGEYFSVAPQNVHAY-IIGEHGDTELPVWSQAYI----GVMPIRKLVESKGEEAQKDLERIFVNVRDAA 75 (168)
T ss_dssp THHHHHHHHHHHHHHHTSCGGGEEEE-EEBCSSTTCEEEEEEEEE----TTEESTTTSGGGTTTHHHHHHHHHHHHHHHH
T ss_pred CccHHHHHHHHHHHHhCcCHHHeEEE-EEcCCCCccccchhhccc----CCcchhhhhhhhhhhhccchhhhhhhhhhhH
Confidence 67999999999999999999999986 689999999999999999 99999988765432 3456788888889
Q ss_pred HHHHHhcCCcchHHHHHHHHHHHHHHHcCCCCCcEEEEEEeecCCCCCCCCeEEEEeEEEe-CCeEEEecCCCCCHHHHH
Q 019990 233 AAIIKARKLSSALSAASSACDHIRDWVLGTPKGTWVSMGVYSDGSYGIPEGLIYSFPVTCE-KGEWSIVKGLKVDEFSRA 311 (332)
Q Consensus 233 ~~i~~~~g~~~~~~~a~a~~~~i~~~~~~~~~~~i~~~~v~~~g~yg~~~~~~~s~Pv~~~-~G~~~~~~~~~l~~~E~~ 311 (332)
.+++..|+.+.+ +++.++.+++..++. +.+.+.|++++++++||. +++|||+||+++ +|+.+++ +++||++|++
T Consensus 76 ~~v~~~~~~s~~-~~a~~~~~~~~~~~~--~~~~~~~~~~~~~~~yg~-~~v~~s~Pv~lg~~Gv~~v~-~l~Ls~~E~~ 150 (168)
T d1ldna2 76 YQIIEKKGATYY-GIAMGLARVTRAILH--NENAILTVSAYLDGLYGE-RDVYIGVPAVINRNGIREVI-EIELNDDEKN 150 (168)
T ss_dssp HHHHHHHSCCCH-HHHHHHHHHHHHHHT--TCCEEEEEEEEEESTTSC-EEEEEEEEEEEETTEEEEEC-CCCCCHHHHH
T ss_pred HHHHHhhccccc-hHHHHHhhHHHhhhc--ccceeeeeeeeeccccCC-CCeeecceEEEcCCeEEEEe-CCCCCHHHHH
Confidence 999999886654 556666666665554 357899999999999996 799999999999 8887887 5999999999
Q ss_pred HHHHHHHHHHHHHHHHh
Q 019990 312 KMDATAEELAEEKTLAY 328 (332)
Q Consensus 312 ~l~~s~~~i~~~~~~~~ 328 (332)
+|++|++.|++.+++|.
T Consensus 151 ~L~~s~~~lk~~i~~a~ 167 (168)
T d1ldna2 151 RFHHSAATLKSVLARAF 167 (168)
T ss_dssp HHHHHHHHHHHHHHHSC
T ss_pred HHHHHHHHHHHHHHHHc
Confidence 99999999999999875
|
| >d7mdha1 c.2.1.5 (A:23-197) Malate dehydrogenase {Sorghum (Sorghum vulgare), chloroplast [TaxId: 4558]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Malate dehydrogenase species: Sorghum (Sorghum vulgare), chloroplast [TaxId: 4558]
Probab=99.97 E-value=6.3e-30 Score=212.21 Aligned_cols=154 Identities=45% Similarity=0.647 Sum_probs=141.5
Q ss_pred CCCcEEEEEcCCChhHHHHHHHHHhcccCCCCCCeEEEEEecccchhhhhhhHhhhhhhccCCccceEEeCCHHHHhCCC
Q 019990 3 KNPLRVLVTGAAGQIGYALVPMIARGIMLGPDQPVILHMLDIEPAAEALNGVKMELIDAAFPLLKGVVATTDVVEACKDV 82 (332)
Q Consensus 3 ~~~~kI~VtGaaG~IGs~l~~~L~~~~~~~~~~~~~i~l~D~~~~~~~~~~~~~dl~~~~~~~~~~v~~~~~~~~a~~~a 82 (332)
+++.||+||||+|.||++++++|++++++|.+...+++|+|+....+.+++..+|+.|+.++....+...++.+++++++
T Consensus 22 k~~~kV~I~GA~G~Ig~~l~~~La~g~v~g~~~~i~L~L~di~~~~~~l~g~~mdl~d~a~~~~~~~~~~~~~~~~~~~a 101 (175)
T d7mdha1 22 KKLVNIAVSGAAGMISNHLLFKLASGEVFGQDQPIALKLLGSERSFQALEGVAMELEDSLYPLLREVSIGIDPYEVFEDV 101 (175)
T ss_dssp CCCEEEEEETTTSHHHHHHHHHHHHTTTTCTTCCEEEEEECCGGGHHHHHHHHHHHHTTTCTTEEEEEEESCHHHHTTTC
T ss_pred CCCcEEEEECCCcHHHHHHHHHHHcCcccCCCceEEEEEecCccccchhcchhhhhcccccccccCccccccchhhccCC
Confidence 35679999999999999999999999988887778999999987777889999999998877777788888999999999
Q ss_pred cEEEEecCCCCCCCCChhHHHhhhHHHHHHHHHHHHhhcCCCcEEEEEeCChhhHHHHHHHHCCCCCCCcEEEe
Q 019990 83 NIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEKHAAPNCKVLVVANPANTNALILKEFAPSIPAKNITCL 156 (332)
Q Consensus 83 DiVi~~ag~~~~~~~~~~~~~~~N~~~~~~i~~~i~~~~~~~~~viv~snp~~~~~~~~~~~~~~~~~~~i~~~ 156 (332)
|+||+++|.++++|++|.|++..|..+++++++++.++++++++++++|||+|.++++++++++++|+++|.++
T Consensus 102 DvVvi~ag~~rkpg~tR~Dll~~N~~I~k~~~~~i~~~a~~~~~vlvv~NPvd~~t~ia~k~a~~ip~~~i~~m 175 (175)
T d7mdha1 102 DWALLIGAKPRGPGMERAALLDINGQIFADQGKALNAVASKNVKVLVVGNPCNTNALICLKNAPDIPAKNFHAL 175 (175)
T ss_dssp SEEEECCCCCCCTTCCHHHHHHHHHHHHHHHHHHHHHHSCTTCEEEECSSSHHHHHHHHHHTCTTSCGGGEEEC
T ss_pred ceEEEeeccCCCCCCcHHHHHHHHHHHHHHHHHHHHhhCCCCcEEEEecCcHHHHHHHHHHHCCCCCHHHEeCC
Confidence 99999999999999999999999999999999999999856899999999999999999998889999998764
|
| >d1llca2 d.162.1.1 (A:165-334) Lactate dehydrogenase {Lactobacillus casei [TaxId: 1582]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: LDH C-terminal domain-like superfamily: LDH C-terminal domain-like family: Lactate & malate dehydrogenases, C-terminal domain domain: Lactate dehydrogenase species: Lactobacillus casei [TaxId: 1582]
Probab=99.97 E-value=1.7e-32 Score=228.73 Aligned_cols=166 Identities=23% Similarity=0.342 Sum_probs=143.0
Q ss_pred ecccHHHHHHHHHHHcCCCCCCeeeeEEEecCCCceeecccCcccccCCCCcchhhhcccccc----chhHHHHHHHhhH
Q 019990 157 TRLDHNRAMGQISERLKVHVSDVKNVIIWGNHSSTQYPDVNHATVTTSKGEKPVREAVADDNW----LNTEFITTVQQRG 232 (332)
Q Consensus 157 t~l~~~r~~~~~a~~~~v~~~~v~~~~V~G~hg~~~v~~~s~~~v~~~~~~~p~~~~~~~~~~----~~~~~~~~v~~~~ 232 (332)
|.||+.|+++++|+++|+++.+|+.+ |||+||++++|+||++++ +|+|+.+++.+..| ..+++.+.+++++
T Consensus 1 T~LDs~R~~~~lA~~l~v~~~~V~~~-ViG~Hg~~~vp~~s~~~i----~g~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ 75 (172)
T d1llca2 1 TSLDTARFRQSIAEMVNVDARSVHAY-IMGEHGDTEFPVWSHANI----GGVTIAEWVKAHPEIKEDKLVKMFEDVRDAA 75 (172)
T ss_dssp THHHHHHHHHHHHHHSCCCTTSCEEE-EEBSSSSSCEEEEEEEES----TTCCSSSSSSCSCSSSSSSSSTTTTTTGGGT
T ss_pred CchHHHHHHHHHHHHhCcCHHHeEEE-EEcCCCCcceeeeecccc----CCccHHHHHhhhhccchhHHHHHHHhhcchH
Confidence 67999999999999999999999986 689999999999999999 99999988765322 3456778888999
Q ss_pred HHHHHhcCCcchHHHHHHHHHHHHHHHcCCCCCcEEEEEEeecCCCCCCCCeEEEEeEEEe-CCeEEEecCCCCCHHHHH
Q 019990 233 AAIIKARKLSSALSAASSACDHIRDWVLGTPKGTWVSMGVYSDGSYGIPEGLIYSFPVTCE-KGEWSIVKGLKVDEFSRA 311 (332)
Q Consensus 233 ~~i~~~~g~~~~~~~a~a~~~~i~~~~~~~~~~~i~~~~v~~~g~yg~~~~~~~s~Pv~~~-~G~~~~~~~~~l~~~E~~ 311 (332)
+++++.+|.++ +++|.+.++++..++.+ ++.++|++++++|+||+ .++|||+||++| +|++++++ ++||++|++
T Consensus 76 ~~i~~~kg~~~-~a~a~~~~~~~~~~~~~--~~~~~~~~~~~~g~ygi-~~~~~s~P~~lg~~Gv~~i~~-l~L~~~E~~ 150 (172)
T d1llca2 76 YEIIKLKGATF-YGIATALARISKAILND--ENAVLPLSVYMDGQYGI-NDLYIGTPAVINRNGIQNILE-IPLTDHEEE 150 (172)
T ss_dssp TTTSSSSSCTT-HHHHHHHHHHHHHHHHT--CCCCEECCCCCSSSSSC-CSSCCBCEEEEETTEEEEECC-CCCTTHHHH
T ss_pred HHHHHhhhhhh-hhhHHHHHHHHHHHhcC--CCCccceeeeecCccCc-ccceEEEEEEEcCCceEEEec-CCCCHHHHH
Confidence 99999988665 45577777766665553 46799999999999999 589999999999 99999995 999999999
Q ss_pred HHHHHHHHHHHHHHHHhhhhC
Q 019990 312 KMDATAEELAEEKTLAYSCLN 332 (332)
Q Consensus 312 ~l~~s~~~i~~~~~~~~~~~~ 332 (332)
+|++|+++|++.++.++.-+|
T Consensus 151 ~l~~s~~~lk~~i~~~~~~~~ 171 (172)
T d1llca2 151 SMQKSASQLKKVLTDAFAKND 171 (172)
T ss_dssp HHHTTTTTTTTTTTTTCCCCC
T ss_pred HHHHHHHHHHHHHHHHHHhhc
Confidence 999999999999888776554
|
| >d1y7ta1 c.2.1.5 (A:0-153) Malate dehydrogenase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Malate dehydrogenase species: Thermus thermophilus [TaxId: 274]
Probab=99.96 E-value=4.7e-29 Score=203.61 Aligned_cols=154 Identities=55% Similarity=0.781 Sum_probs=136.7
Q ss_pred CCCCcEEEEEcCCChhHHHHHHHHHhcccCCCCCCeEEEEEecccchhhhhhhHhhhhhhccCCccceEEeCCHHHHhCC
Q 019990 2 AKNPLRVLVTGAAGQIGYALVPMIARGIMLGPDQPVILHMLDIEPAAEALNGVKMELIDAAFPLLKGVVATTDVVEACKD 81 (332)
Q Consensus 2 ~~~~~kI~VtGaaG~IGs~l~~~L~~~~~~~~~~~~~i~l~D~~~~~~~~~~~~~dl~~~~~~~~~~v~~~~~~~~a~~~ 81 (332)
.++|+||+|+||+|+||+++++.|+++++++......+.++|.....+.+.+..+|+.+...+....+....+.++++++
T Consensus 1 m~~p~KV~IiGA~G~VG~~~a~~l~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (154)
T d1y7ta1 1 MKAPVRVAVTGAAGQIGYSLLFRIAAGEMLGKDQPVILQLLEIPQAMKALEGVVMELEDCAFPLLAGLEATDDPKVAFKD 80 (154)
T ss_dssp CCCCEEEEESSTTSHHHHHHHHHHHTTTTTCTTCCEEEEEECCGGGHHHHHHHHHHHHTTTCTTEEEEEEESCHHHHTTT
T ss_pred CCCCCEEEEECCCCHHHHHHHHHHHhccccccccchhHhHhccccchhhHcCchhhhhccccccccccccCCchhhhccc
Confidence 16789999999889999999999999988876555677888887766778888888888877677788888888999999
Q ss_pred CcEEEEecCCCCCCCCChhHHHhhhHHHHHHHHHHHHhhcCCCcEEEEEeCChhhHHHHHHHHCCCCCCCcEEE
Q 019990 82 VNIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEKHAAPNCKVLVVANPANTNALILKEFAPSIPAKNITC 155 (332)
Q Consensus 82 aDiVi~~ag~~~~~~~~~~~~~~~N~~~~~~i~~~i~~~~~~~~~viv~snp~~~~~~~~~~~~~~~~~~~i~~ 155 (332)
+|+||++||.+++++++|.+++..|+++++++++.+.++++|+++++++|||+|+++++++++++++|++|+.+
T Consensus 81 advViitaG~~~~pg~~r~dl~~~N~~i~~~~~~~i~k~a~~~~~vivvsNPvDv~t~~a~k~asg~p~~rvia 154 (154)
T d1y7ta1 81 ADYALLVGAAPRKAGMERRDLLQVNGKIFTEQGRALAEVAKKDVKVLVVGNPANTNALIAYKNAPGLNPRNFTA 154 (154)
T ss_dssp CSEEEECCCCCCCTTCCHHHHHHHHHHHHHHHHHHHHHHSCTTCEEEECSSSHHHHHHHHHHTCTTSCGGGEEE
T ss_pred ccEEEeecCcCCCCCCcHHHHHHHHHHHHHHHHHHHHHhCCCCcEEEEecCcHHHHHHHHHHHcCCCcHHhccC
Confidence 99999999999999999999999999999999999999985688999999999999999988768999999753
|
| >d5mdha1 c.2.1.5 (A:1-154) Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Malate dehydrogenase species: Pig (Sus scrofa) [TaxId: 9823]
Probab=99.96 E-value=3.5e-29 Score=204.35 Aligned_cols=154 Identities=54% Similarity=0.861 Sum_probs=136.1
Q ss_pred CCCcEEEEEcCCChhHHHHHHHHHhcccCCCCCCeEEEEEecccchhhhhhhHhhhhhhccCCccceEEeCCHHHHhCCC
Q 019990 3 KNPLRVLVTGAAGQIGYALVPMIARGIMLGPDQPVILHMLDIEPAAEALNGVKMELIDAAFPLLKGVVATTDVVEACKDV 82 (332)
Q Consensus 3 ~~~~kI~VtGaaG~IGs~l~~~L~~~~~~~~~~~~~i~l~D~~~~~~~~~~~~~dl~~~~~~~~~~v~~~~~~~~a~~~a 82 (332)
++|+||+|+||+|+||+++++.|+++++++.+...+++|+|.+...+.+++..+|+.+..++....+....+.+++++++
T Consensus 1 s~p~KV~IiGA~G~VG~~la~~l~~~~~~~~~~~~~L~l~d~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (154)
T d5mdha1 1 SEPIRVLVTGAAGQIAYSLLYSIGNGSVFGKDQPIILVLLDITPMMGVLDGVLMELQDCALPLLKDVIATDKEEIAFKDL 80 (154)
T ss_dssp CCCEEEEESSTTSHHHHTTHHHHHTTTTTCTTCCEEEEEECCGGGHHHHHHHHHHHHHTCCTTEEEEEEESCHHHHTTTC
T ss_pred CCceEEEEECCCCHHHHHHHHHHHHHHhcCCCCccEEEEecCccchhhhhhhhhhhcccccccccccccCcccccccCCc
Confidence 36899999999899999999999998888877778999999987666777777777777666666777778889999999
Q ss_pred cEEEEecCCCCCCCCChhHHHhhhHHHHHHHHHHHHhhcCCCcEEEEEeCChhhHHHHHHHHCCCCCCCcEEEe
Q 019990 83 NIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEKHAAPNCKVLVVANPANTNALILKEFAPSIPAKNITCL 156 (332)
Q Consensus 83 DiVi~~ag~~~~~~~~~~~~~~~N~~~~~~i~~~i~~~~~~~~~viv~snp~~~~~~~~~~~~~~~~~~~i~~~ 156 (332)
|+||+++|.+++++++|.+++..|+++++++++.+.++++++++++++|||+|+|+++++++++++|++|+.++
T Consensus 81 dvVVitag~~~~~g~sr~dll~~N~~i~k~~~~~i~k~a~~~~~iivvsNPvD~mt~v~~k~s~g~P~~~v~~m 154 (154)
T d5mdha1 81 DVAILVGSMPRRDGMERKDLLKANVKIFKCQGAALDKYAKKSVKVIVVGNPANTNCLTASKSAPSIPKENFSCL 154 (154)
T ss_dssp SEEEECCSCCCCTTCCTTTTHHHHHHHHHHHHHHHHHHSCTTCEEEECSSSHHHHHHHHHHTCTTSCGGGEEEC
T ss_pred eEEEEecccCCCCCCchhHHHHHhHHHHHHHHHHHHhhCCCceEEEEecCcHHHHHHHHHHHcCCCCHHHEeCC
Confidence 99999999999999999999999999999999999999855667888999999999999998559999998763
|
| >d1o6za1 c.2.1.5 (A:22-162) Malate dehydrogenase {Archaeon Haloarcula marismortui [TaxId: 2238]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Malate dehydrogenase species: Archaeon Haloarcula marismortui [TaxId: 2238]
Probab=99.96 E-value=7.3e-29 Score=198.50 Aligned_cols=142 Identities=22% Similarity=0.247 Sum_probs=123.8
Q ss_pred cEEEEEcCCChhHHHHHHHHHhcccCCCCCCeEEEEEecccchhhhhhhHhhhhhhccCCccceEEeCCHHHHhCCCcEE
Q 019990 6 LRVLVTGAAGQIGYALVPMIARGIMLGPDQPVILHMLDIEPAAEALNGVKMELIDAAFPLLKGVVATTDVVEACKDVNIA 85 (332)
Q Consensus 6 ~kI~VtGaaG~IGs~l~~~L~~~~~~~~~~~~~i~l~D~~~~~~~~~~~~~dl~~~~~~~~~~v~~~~~~~~a~~~aDiV 85 (332)
.||+|+||+|+||+++++.|+.+++++ |++|+|++..++.+++..+|+.|... +..........++++++||+|
T Consensus 1 sKV~IiGaaG~VG~~~A~~l~~~~l~~-----el~L~Di~~~~~~~~g~a~Dl~~~~~-~~~~~~i~~~~~~~~~~aDiV 74 (142)
T d1o6za1 1 TKVSVVGAAGTVGAAAGYNIALRDIAD-----EVVFVDIPDKEDDTVGQAADTNHGIA-YDSNTRVRQGGYEDTAGSDVV 74 (142)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTCCS-----EEEEECCGGGHHHHHHHHHHHHHHHT-TTCCCEEEECCGGGGTTCSEE
T ss_pred CeEEEECCCCcHHHHHHHHHHhCCCCC-----EEEEEecCCcccccceeecchhhccc-ccCCceEeeCCHHHhhhcCEE
Confidence 489999988999999999999998875 99999986555678899999999543 223333333446789999999
Q ss_pred EEecCCCCCCCCChhHHHhhhHHHHHHHHHHHHhhcCCCcEEEEEeCChhhHHHHHHHHCCCCCCCcEEE
Q 019990 86 VMVGGFPRKEGMERKDVMSKNVSIYKAQASALEKHAAPNCKVLVVANPANTNALILKEFAPSIPAKNITC 155 (332)
Q Consensus 86 i~~ag~~~~~~~~~~~~~~~N~~~~~~i~~~i~~~~~~~~~viv~snp~~~~~~~~~~~~~~~~~~~i~~ 155 (332)
|++||.+++++++|.++++.|+++++++++.+.+++ |+++++++|||+|+|++++++. +++|++|++|
T Consensus 75 vitaG~~~~~g~~R~dl~~~N~~I~~~i~~~i~~~~-p~~i~ivvtNPvDvmt~~~~k~-sg~~~~rViG 142 (142)
T d1o6za1 75 VITAGIPRQPGQTRIDLAGDNAPIMEDIQSSLDEHN-DDYISLTTSNPVDLLNRHLYEA-GDRSREQVIG 142 (142)
T ss_dssp EECCCCCCCTTCCHHHHHHHHHHHHHHHHHHHHTTC-SCCEEEECCSSHHHHHHHHHHH-SSSCGGGEEE
T ss_pred EEecccccccCCchhhHHHHHHHHHHHHHHHHHhcC-CCceEEEecChHHHHHHHHHHH-HCcCcccccC
Confidence 999999999999999999999999999999999998 8999999999999999999998 8999999765
|
| >d1o6za2 d.162.1.1 (A:163-330) Malate dehydrogenase {Archaeon Haloarcula marismortui [TaxId: 2238]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: LDH C-terminal domain-like superfamily: LDH C-terminal domain-like family: Lactate & malate dehydrogenases, C-terminal domain domain: Malate dehydrogenase species: Archaeon Haloarcula marismortui [TaxId: 2238]
Probab=99.96 E-value=9.4e-29 Score=203.60 Aligned_cols=158 Identities=20% Similarity=0.306 Sum_probs=134.8
Q ss_pred eecccHHHHHHHHHHHcCCCCCCeeeeEEEecCCCceeecccCcccccCCCCcchhhhccccccchhHHHHHHHhhHHHH
Q 019990 156 LTRLDHNRAMGQISERLKVHVSDVKNVIIWGNHSSTQYPDVNHATVTTSKGEKPVREAVADDNWLNTEFITTVQQRGAAI 235 (332)
Q Consensus 156 ~t~l~~~r~~~~~a~~~~v~~~~v~~~~V~G~hg~~~v~~~s~~~v~~~~~~~p~~~~~~~~~~~~~~~~~~v~~~~~~i 235 (332)
||.||+.|+++++|+++|+++++|+++ |||+||++++|+||++.+ ++.|.... .+..+++.+.++.++.++
T Consensus 2 Gt~LD~~R~~~~lA~~l~v~~~~V~~~-ViG~Hg~~~v~~~s~~~v----~~~~~~~~----~~~~~~~~~~~~~~~~~i 72 (161)
T d1o6za2 2 GGRLDSARFRYVLSEEFDAPVQNVEGT-ILGEHGDAQVPVFSKVSV----DGTDPEFS----GDEKEQLLGDLQESAMDV 72 (161)
T ss_dssp CHHHHHHHHHHHHHHHHTCCGGGEECC-EEECSSTTEEECGGGCEE----TTBCCCCC----HHHHHHHHHHHHHHHHHH
T ss_pred CchHHHHHHHHHHHHHHCcCHHHeEEE-EEeCCCCceeeehhhhcc----cccccccc----hHHHHHHHHHhhhhHHHH
Confidence 489999999999999999999999997 589999999999999999 87775422 123467888899999999
Q ss_pred HHhcCCcchHHHHHHHHHHHHHHHcCCCCCcEEEEEEeecCCCCCCCCeEEEEeEEEe-CCeEEEecCCCCCHHHHHHHH
Q 019990 236 IKARKLSSALSAASSACDHIRDWVLGTPKGTWVSMGVYSDGSYGIPEGLIYSFPVTCE-KGEWSIVKGLKVDEFSRAKMD 314 (332)
Q Consensus 236 ~~~~g~~~~~~~a~a~~~~i~~~~~~~~~~~i~~~~v~~~g~yg~~~~~~~s~Pv~~~-~G~~~~~~~~~l~~~E~~~l~ 314 (332)
++.++.+++ ++++++++++..++. +.+.+.+++++++|+|+. .++|||+||++| +|++++++ ++||++|+++|+
T Consensus 73 ~~~~~~s~~-~~a~a~~~~~~~~~~--~~~~~~~~~~~~~~~~~~-~~i~~S~Pv~ig~~Gv~~v~~-l~l~~~E~~~L~ 147 (161)
T d1o6za2 73 IERKGATEW-GPARGVAHMVEAILH--DTGEVLPASVKLEGEFGH-EDTAFGVPVSLGSNGVEEIVE-WDLDDYEQDLMA 147 (161)
T ss_dssp HTTTSSCCH-HHHHHHHHHHHHHHT--TCCCEEEEEEEEESGGGC-EEEEEEEEEEEETTEEEEECC-CCCCHHHHHHHH
T ss_pred HHhhhhhhh-HHHHhhHhhhHhhhh--ccccceeecccccccccc-cCceeeeeeEEcCCCEEEEeC-CCCCHHHHHHHH
Confidence 999886654 556777766655544 346788999999999987 799999999999 99999995 999999999999
Q ss_pred HHHHHHHHHHHHH
Q 019990 315 ATAEELAEEKTLA 327 (332)
Q Consensus 315 ~s~~~i~~~~~~~ 327 (332)
+|++.|++.++++
T Consensus 148 ~s~~~L~~~~~~i 160 (161)
T d1o6za2 148 DAAEKLSDQYDKI 160 (161)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhh
Confidence 9999999999875
|
| >d1ldna1 c.2.1.5 (A:15-162) Lactate dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Lactate dehydrogenase species: Bacillus stearothermophilus [TaxId: 1422]
Probab=99.96 E-value=1.5e-28 Score=198.85 Aligned_cols=146 Identities=21% Similarity=0.317 Sum_probs=127.9
Q ss_pred CCC-CCcEEEEEcCCChhHHHHHHHHHhcccCCCCCCeEEEEEecccchhhhhhhHhhhhhhccCCccceEEeCCHHHHh
Q 019990 1 MAK-NPLRVLVTGAAGQIGYALVPMIARGIMLGPDQPVILHMLDIEPAAEALNGVKMELIDAAFPLLKGVVATTDVVEAC 79 (332)
Q Consensus 1 m~~-~~~kI~VtGaaG~IGs~l~~~L~~~~~~~~~~~~~i~l~D~~~~~~~~~~~~~dl~~~~~~~~~~v~~~~~~~~a~ 79 (332)
|.+ ...||+|+| +|+||+++++.|+..++++ |++|+|+++ +++++.++||.|.......++....+.++++
T Consensus 1 m~~~~~~KI~IiG-aG~vG~~~a~~l~~~~l~~-----el~L~Di~~--~~~~g~a~Dl~~~~~~~~~~~~~~~~d~~~l 72 (148)
T d1ldna1 1 MKNNGGARVVVIG-AGFVGASYVFALMNQGIAD-----EIVLIDANE--SKAIGDAMDFNHGKVFAPKPVDIWHGDYDDC 72 (148)
T ss_dssp CTTTTSCEEEEEC-CSHHHHHHHHHHHHHTCCS-----EEEEECSSH--HHHHHHHHHHHHHTTSSSSCCEEEECCGGGT
T ss_pred CCCCCCCeEEEEC-cCHHHHHHHHHHHhcCCCc-----eEEEEeecc--ccccchhccHhhCccccCCCeEEEECCHHHh
Confidence 544 468999999 5999999999999988865 999999964 5788999999998654444554444557889
Q ss_pred CCCcEEEEecCCCCCCCCChhHHHhhhHHHHHHHHHHHHhhcCCCcEEEEEeCChhhHHHHHHHHCCCCCCCcEEEe
Q 019990 80 KDVNIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEKHAAPNCKVLVVANPANTNALILKEFAPSIPAKNITCL 156 (332)
Q Consensus 80 ~~aDiVi~~ag~~~~~~~~~~~~~~~N~~~~~~i~~~i~~~~~~~~~viv~snp~~~~~~~~~~~~~~~~~~~i~~~ 156 (332)
++||+||+++|.+++++++|.+++..|+++++++++.+++++ |+++++++|||+|+++++++++ +++|++|++|.
T Consensus 73 ~daDvvvitag~~~~~~~~R~dl~~~N~~i~~~i~~~i~~~~-p~a~~ivvtNPvd~~t~~~~k~-sg~p~~rViG~ 147 (148)
T d1ldna1 73 RDADLVVICAGANQKPGETRLDLVDKNIAIFRSIVESVMASG-FQGLFLVATNPVDILTYATWKF-SGLPHERVIGS 147 (148)
T ss_dssp TTCSEEEECCSCCCCTTTCSGGGHHHHHHHHHHHHHHHHHHT-CCSEEEECSSSHHHHHHHHHHH-HTCCGGGEEEC
T ss_pred ccceeEEEecccccccCcchhHHHHHHHHHHHHHHHHHHhhC-CCceEEEecCccHHHHHHHHHH-HCcChhheecC
Confidence 999999999999999999999999999999999999999998 8999999999999999999998 89999997664
|
| >d1llda1 c.2.1.5 (A:7-149) Lactate dehydrogenase {Bifidobacterium longum, strain am101-2 [TaxId: 216816]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Lactate dehydrogenase species: Bifidobacterium longum, strain am101-2 [TaxId: 216816]
Probab=99.96 E-value=2.2e-28 Score=196.18 Aligned_cols=141 Identities=23% Similarity=0.387 Sum_probs=124.0
Q ss_pred CcEEEEEcCCChhHHHHHHHHHhcccCCCCCCeEEEEEecccchhhhhhhHhhhhhhccCC-ccceEEeCCHHHHhCCCc
Q 019990 5 PLRVLVTGAAGQIGYALVPMIARGIMLGPDQPVILHMLDIEPAAEALNGVKMELIDAAFPL-LKGVVATTDVVEACKDVN 83 (332)
Q Consensus 5 ~~kI~VtGaaG~IGs~l~~~L~~~~~~~~~~~~~i~l~D~~~~~~~~~~~~~dl~~~~~~~-~~~v~~~~~~~~a~~~aD 83 (332)
|.||+|+| +|+||+++++.|+.+++++ |++|+|+++ ++++|.++|+.|..... ...+....+ ++++++||
T Consensus 1 p~Ki~IIG-aG~VG~~~a~~l~~~~l~~-----ElvL~D~~~--~~~~g~a~Dl~~a~~~~~~~~i~~~~~-~~~~~daD 71 (143)
T d1llda1 1 PTKLAVIG-AGAVGSTLAFAAAQRGIAR-----EIVLEDIAK--ERVEAEVLDMQHGSSFYPTVSIDGSDD-PEICRDAD 71 (143)
T ss_dssp CCEEEEEC-CSHHHHHHHHHHHHTTCCS-----EEEEECSSH--HHHHHHHHHHHHTGGGSTTCEEEEESC-GGGGTTCS
T ss_pred CCEEEEEC-CCHHHHHHHHHHHhcCCCc-----EEEEEEecc--ccchhHHHHHHhccccCCCceeecCCC-HHHhhCCc
Confidence 57999999 5999999999999999875 999999864 57889999999975433 234444444 67899999
Q ss_pred EEEEecCCCCCCCCChhHHHhhhHHHHHHHHHHHHhhcCCCcEEEEEeCChhhHHHHHHHHCCCCCCCcEEEe
Q 019990 84 IAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEKHAAPNCKVLVVANPANTNALILKEFAPSIPAKNITCL 156 (332)
Q Consensus 84 iVi~~ag~~~~~~~~~~~~~~~N~~~~~~i~~~i~~~~~~~~~viv~snp~~~~~~~~~~~~~~~~~~~i~~~ 156 (332)
+||++||.+++++++|.+++..|+++++++++.+++++ |+++++++|||+|+|++++++. +++|++|++|.
T Consensus 72 vVVitaG~~~~~g~~R~dl~~~N~~i~~~i~~~i~~~~-p~ai~ivvtNPvDvmt~~~~~~-sg~p~~rViG~ 142 (143)
T d1llda1 72 MVVITAGPRQKPGQSRLELVGATVNILKAIMPNLVKVA-PNAIYMLITNPVDIATHVAQKL-TGLPENQIFGS 142 (143)
T ss_dssp EEEECCCCCCCTTCCHHHHHHHHHHHHHHHHHHHHHHC-TTSEEEECCSSHHHHHHHHHHH-HTCCTTSEEEC
T ss_pred EEEEecccccCCCCchhhhhhhhHHHHHHHHHHHHhhC-CCeEEEEeCCchHHHHHHHHHH-HCCChhhccCC
Confidence 99999999999999999999999999999999999998 8999999999999999999998 89999997664
|
| >d1hyea1 c.2.1.5 (A:1-145) MJ0490, lactate/malate dehydrogenase {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: MJ0490, lactate/malate dehydrogenase species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=99.95 E-value=7.6e-28 Score=193.51 Aligned_cols=142 Identities=20% Similarity=0.342 Sum_probs=121.9
Q ss_pred cEEEEEcCCChhHHHHHHHHHhcccCCCCCCeEEEEEecccchhhhhhhHhhhhhhccCCc--cceEE-eCCHHHHhCCC
Q 019990 6 LRVLVTGAAGQIGYALVPMIARGIMLGPDQPVILHMLDIEPAAEALNGVKMELIDAAFPLL--KGVVA-TTDVVEACKDV 82 (332)
Q Consensus 6 ~kI~VtGaaG~IGs~l~~~L~~~~~~~~~~~~~i~l~D~~~~~~~~~~~~~dl~~~~~~~~--~~v~~-~~~~~~a~~~a 82 (332)
|||+|+||+|.||+++++.|+..++++ |++|+|++++.++++|..+|+.|...... .++.. .++.++++++|
T Consensus 1 MKV~IiGA~G~VG~~~a~~l~~~~l~~-----el~L~D~~~~~~~~~g~a~Dl~~~~~~~~~~~~~~~~~~~d~~~l~~a 75 (145)
T d1hyea1 1 MKVTIIGASGRVGSATALLLAKEPFMK-----DLVLIGREHSINKLEGLREDIYDALAGTRSDANIYVESDENLRIIDES 75 (145)
T ss_dssp CEEEEETTTSHHHHHHHHHHHTCTTCC-----EEEEEECGGGHHHHHHHHHHHHHHHTTSCCCCEEEEEETTCGGGGTTC
T ss_pred CEEEEECCCChHHHHHHHHHHhCCccc-----ccccccchhhhHhhhcccccchhcccccccCCccccCCcchHHHhccc
Confidence 689999988999999999999998875 99999997655567889999999754332 23332 23456889999
Q ss_pred cEEEEecCCCCCCCCChhHHHhhhHHHHHHHHHHHHhhcCCCcEEEEEeCChhhHHHHHHHHCCCCCCCcEEE
Q 019990 83 NIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEKHAAPNCKVLVVANPANTNALILKEFAPSIPAKNITC 155 (332)
Q Consensus 83 DiVi~~ag~~~~~~~~~~~~~~~N~~~~~~i~~~i~~~~~~~~~viv~snp~~~~~~~~~~~~~~~~~~~i~~ 155 (332)
|+||++||.+++++++|.+++..|+++++++++.+.+++ |++. +++|||+|+|++++++. ++||++|++|
T Consensus 76 DvVVitAG~~~~~g~sR~dl~~~Na~iv~~i~~~i~~~~-~~~i-ivVtNPvD~mt~~~~k~-sg~p~~rViG 145 (145)
T d1hyea1 76 DVVIITSGVPRKEGMSRMDLAKTNAKIVGKYAKKIAEIC-DTKI-FVITNPVDVMTYKALVD-SKFERNQVFG 145 (145)
T ss_dssp SEEEECCSCCCCTTCCHHHHHHHHHHHHHHHHHHHHHHC-CCEE-EECSSSHHHHHHHHHHH-HCCCTTSEEE
T ss_pred eEEEEecccccCCCCChhhhhhhhHHHHHHHHHHHhccC-CCeE-EEEcCchHHHHHHHHHH-HCcCcccccC
Confidence 999999999999999999999999999999999999998 7764 56899999999999998 8999999765
|
| >d1ojua1 c.2.1.5 (A:22-163) Malate dehydrogenase {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Malate dehydrogenase species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]
Probab=99.95 E-value=1.1e-27 Score=192.03 Aligned_cols=140 Identities=27% Similarity=0.402 Sum_probs=124.1
Q ss_pred cEEEEEcCCChhHHHHHHHHHhcccCCCCCCeEEEEEecccchhhhhhhHhhhhhhccCC--ccceEEeCCHHHHhCCCc
Q 019990 6 LRVLVTGAAGQIGYALVPMIARGIMLGPDQPVILHMLDIEPAAEALNGVKMELIDAAFPL--LKGVVATTDVVEACKDVN 83 (332)
Q Consensus 6 ~kI~VtGaaG~IGs~l~~~L~~~~~~~~~~~~~i~l~D~~~~~~~~~~~~~dl~~~~~~~--~~~v~~~~~~~~a~~~aD 83 (332)
|||.|+| +|+||+++++.|+.+++++ |++|+|+++ ++++|+++|+.|..... ...+....+ +++++++|
T Consensus 1 MKI~IIG-aG~VG~~~a~~l~~~~~~~-----elvL~Di~~--~~~~g~alDl~~~~~~~~~~~~i~~~~d-~~~~~~ad 71 (142)
T d1ojua1 1 MKLGFVG-AGRVGSTSAFTCLLNLDVD-----EIALVDIAE--DLAVGEAMDLAHAAAGIDKYPKIVGGAD-YSLLKGSE 71 (142)
T ss_dssp CEEEEEC-CSHHHHHHHHHHHHHSCCS-----EEEEECSSH--HHHHHHHHHHHHHHHTTTCCCEEEEESC-GGGGTTCS
T ss_pred CEEEEEC-cCHHHHHHHHHHHhcCcCc-----eEEEEeccc--chhhHHHHHHhhhccccCCCCccccCCC-HHHhcccc
Confidence 6999999 5999999999999888865 999999864 57899999999975332 234555556 57899999
Q ss_pred EEEEecCCCCCCCCChhHHHhhhHHHHHHHHHHHHhhcCCCcEEEEEeCChhhHHHHHHHHCCCCCCCcEEEe
Q 019990 84 IAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEKHAAPNCKVLVVANPANTNALILKEFAPSIPAKNITCL 156 (332)
Q Consensus 84 iVi~~ag~~~~~~~~~~~~~~~N~~~~~~i~~~i~~~~~~~~~viv~snp~~~~~~~~~~~~~~~~~~~i~~~ 156 (332)
+||++||.+++++++|.+++..|+++++++++.+.+++ |+++++++|||+|++++++++. ++||++|++|+
T Consensus 72 iVvitag~~~~~g~~r~~l~~~n~~i~~~i~~~i~~~~-p~aivivvtNPvD~~t~~~~k~-sg~p~~rViG~ 142 (142)
T d1ojua1 72 IIVVTAGLARKPGMTRLDLAHKNAGIIKDIAKKIVENA-PESKILVVTNPMDVMTYIMWKE-SGKPRNEVFGM 142 (142)
T ss_dssp EEEECCCCCCCSSCCHHHHHHHHHHHHHHHHHHHHTTS-TTCEEEECSSSHHHHHHHHHHH-SCCCTTSEEEC
T ss_pred EEEEeccccCCCCCchHHHHHHhhHHHHHHHHHHHhhC-CCcEEEEecCChHHHHHHHHHH-HCCChhcEecC
Confidence 99999999999999999999999999999999999998 8999999999999999999998 89999998774
|
| >d1mlda2 d.162.1.1 (A:145-313) Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: LDH C-terminal domain-like superfamily: LDH C-terminal domain-like family: Lactate & malate dehydrogenases, C-terminal domain domain: Malate dehydrogenase species: Pig (Sus scrofa) [TaxId: 9823]
Probab=99.95 E-value=1.7e-28 Score=203.66 Aligned_cols=159 Identities=19% Similarity=0.183 Sum_probs=124.9
Q ss_pred eecccHHHHHHHHHHHcCCCCCCeeeeEEEecC-CCceeecccCcccccCCCCcchhhhccccccchhHHHHHHHhhHHH
Q 019990 156 LTRLDHNRAMGQISERLKVHVSDVKNVIIWGNH-SSTQYPDVNHATVTTSKGEKPVREAVADDNWLNTEFITTVQQRGAA 234 (332)
Q Consensus 156 ~t~l~~~r~~~~~a~~~~v~~~~v~~~~V~G~h-g~~~v~~~s~~~v~~~~~~~p~~~~~~~~~~~~~~~~~~v~~~~~~ 234 (332)
+|.||+.|+++++|+++|++|++|++++ +|+| |++++|+||++.+ ++.+..+ ..+++.+.+++++++
T Consensus 1 ~T~LDs~R~~~~la~~l~v~~~~V~~~V-iGeHg~~t~vp~~s~~~~----~~~~~~~-------~~~~l~~~v~~~~~e 68 (169)
T d1mlda2 1 VTTLDIVRANAFVAELKGLDPARVSVPV-IGGHAGKTIIPLISQCTP----KVDFPQD-------QLSTLTGRIQEAGTE 68 (169)
T ss_dssp CCHHHHHHHHHHHHHHTTCCGGGCBCCE-EECSSGGGEEECGGGCBS----CCCCCHH-------HHHHHHHHHHHHHHH
T ss_pred CcccHHHHHHHHHHHHHCcCHHHeeEEE-EEcCCCcceeehhhhhcc----CCCCcHH-------HHHHHHHHHHHhHHH
Confidence 4789999999999999999999999985 6888 5788988888876 5433221 347899999999999
Q ss_pred HHHhcCCcch--HHHHHHHHHHHHHHH---cCCCCCcEEEEEEeecCCCCCCCCeEEEEeEEEe-CCeEEEecCC-CCCH
Q 019990 235 IIKARKLSSA--LSAASSACDHIRDWV---LGTPKGTWVSMGVYSDGSYGIPEGLIYSFPVTCE-KGEWSIVKGL-KVDE 307 (332)
Q Consensus 235 i~~~~g~~~~--~~~a~a~~~~i~~~~---~~~~~~~i~~~~v~~~g~yg~~~~~~~s~Pv~~~-~G~~~~~~~~-~l~~ 307 (332)
|++.||.+++ ++.++++++.+...+ .+ + ..+.+++ .+.||...++|||+||++| +|++++++ + +||+
T Consensus 69 ii~~k~~~~~~~~~~~~a~~~~~~~i~~~~~~-~-~~v~~~~---~~~~~~~~~v~~s~P~~ig~~Gi~~v~~-l~~L~~ 142 (169)
T d1mlda2 69 VVKAKAGAGSATLSMAYAGARFVFSLVDAMNG-K-EGVVECS---FVKSQETDCPYFSTPLLLGKKGIEKNLG-IGKISP 142 (169)
T ss_dssp HHHHHTTSCSCCHHHHHHHHHHHHHHHHHHHT-C-TTCEEEE---EEECCSSSSSEEEEEEEEETTEEEEECC-CCSCCH
T ss_pred HHHhhcCcChHhHHHHHHHHHHHHHhccccCC-c-eEEEEEe---eccccccCCEeEeeeEEEcCCccEEEec-CCCCCH
Confidence 9999985443 555666665544333 33 2 3344433 3455555789999999999 99999996 6 7999
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhC
Q 019990 308 FSRAKMDATAEELAEEKTLAYSCLN 332 (332)
Q Consensus 308 ~E~~~l~~s~~~i~~~~~~~~~~~~ 332 (332)
+|+++|++|++.|+++|+++++|+.
T Consensus 143 ~E~~~l~~s~~~lk~~I~~g~~fi~ 167 (169)
T d1mlda2 143 FEEKMIAEAIPELKASIKKGEEFVK 167 (169)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 9999999999999999999999973
|
| >d1i0za1 c.2.1.5 (A:1-160) Lactate dehydrogenase {Human (Homo sapiens), heart isoform (H chain) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Lactate dehydrogenase species: Human (Homo sapiens), heart isoform (H chain) [TaxId: 9606]
Probab=99.95 E-value=1.9e-27 Score=193.77 Aligned_cols=142 Identities=22% Similarity=0.399 Sum_probs=125.1
Q ss_pred CCcEEEEEcCCChhHHHHHHHHHhcccCCCCCCeEEEEEecccchhhhhhhHhhhhhhccCCccceEEeCCHHHHhCCCc
Q 019990 4 NPLRVLVTGAAGQIGYALVPMIARGIMLGPDQPVILHMLDIEPAAEALNGVKMELIDAAFPLLKGVVATTDVVEACKDVN 83 (332)
Q Consensus 4 ~~~kI~VtGaaG~IGs~l~~~L~~~~~~~~~~~~~i~l~D~~~~~~~~~~~~~dl~~~~~~~~~~v~~~~~~~~a~~~aD 83 (332)
+..||+|+| +|.||+++++.|+..++++ |++|+|+++ ++++|+++|+.|.............+.++++++||
T Consensus 19 ~~~KV~IIG-aG~VG~~~A~~l~~~~l~~-----ElvLiD~~~--~~a~g~alDl~h~~~~~~~~~~~~~~d~~~~~~ad 90 (160)
T d1i0za1 19 PNNKITVVG-VGQVGMACAISILGKSLAD-----ELALVDVLE--DKLKGEMMDLQHGSLFLQTPKIVADKDYSVTANSK 90 (160)
T ss_dssp CSSEEEEEC-CSHHHHHHHHHHHHTTCCS-----EEEEECSCH--HHHHHHHHHHHHTGGGCCCSEEEECSSGGGGTTCS
T ss_pred CCCeEEEEC-CCHHHHHHHHHHHhcCCCc-----EEEEEEecc--chhHHHHHHHhccccccCCCeEEeccchhhccccc
Confidence 457999999 5999999999999999876 999999964 57899999999976443333334445578899999
Q ss_pred EEEEecCCCCCCCCChhHHHhhhHHHHHHHHHHHHhhcCCCcEEEEEeCChhhHHHHHHHHCCCCCCCcEEE
Q 019990 84 IAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEKHAAPNCKVLVVANPANTNALILKEFAPSIPAKNITC 155 (332)
Q Consensus 84 iVi~~ag~~~~~~~~~~~~~~~N~~~~~~i~~~i~~~~~~~~~viv~snp~~~~~~~~~~~~~~~~~~~i~~ 155 (332)
+||++||.+++++++|.+++..|+++++++++.+++++ |+++++++|||+|++++++++. ++||++|++|
T Consensus 91 iVVitAg~~~~~g~tR~~l~~~N~~i~~~i~~~i~~~~-p~aiiivvtNPvDv~t~~~~k~-sglp~~rViG 160 (160)
T d1i0za1 91 IVVVTAGVRQQEGESRLNLVQRNVNVFKFIIPQIVKYS-PDCIIIVVSNPVDILTYVTWKL-SGLPKHRVIG 160 (160)
T ss_dssp EEEECCSCCCCTTCCGGGGHHHHHHHHHHHHHHHHHHC-TTCEEEECSSSHHHHHHHHHHH-HCCCGGGEEE
T ss_pred EEEEecCCccccCcchHHHHHHHHHHHHHHHHHHHhcC-CCcEEEEeCCchHHHHHHHHHH-HCcCcccccC
Confidence 99999999999999999999999999999999999997 8999999999999999999998 7999999765
|
| >d1a5za1 c.2.1.5 (A:22-163) Lactate dehydrogenase {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Lactate dehydrogenase species: Thermotoga maritima [TaxId: 2336]
Probab=99.95 E-value=1.9e-27 Score=190.56 Aligned_cols=139 Identities=17% Similarity=0.330 Sum_probs=121.9
Q ss_pred cEEEEEcCCChhHHHHHHHHHhcccCCCCCCeEEEEEecccchhhhhhhHhhhhhhccCCccceEEeCCHHHHhCCCcEE
Q 019990 6 LRVLVTGAAGQIGYALVPMIARGIMLGPDQPVILHMLDIEPAAEALNGVKMELIDAAFPLLKGVVATTDVVEACKDVNIA 85 (332)
Q Consensus 6 ~kI~VtGaaG~IGs~l~~~L~~~~~~~~~~~~~i~l~D~~~~~~~~~~~~~dl~~~~~~~~~~v~~~~~~~~a~~~aDiV 85 (332)
|||+|+| +|.||+++++.|+..++.+ |++|+|+++ +++++..+|+.|... +........+.++++++||+|
T Consensus 1 mKI~IIG-aG~VG~~~a~~l~~~~l~~-----el~L~Di~~--~~~~g~~~Dl~~~~~-~~~~~~~~~~~~~~~~~adiv 71 (140)
T d1a5za1 1 MKIGIVG-LGRVGSSTAFALLMKGFAR-----EMVLIDVDK--KRAEGDALDLIHGTP-FTRRANIYAGDYADLKGSDVV 71 (140)
T ss_dssp CEEEEEC-CSHHHHHHHHHHHHHTCCS-----EEEEECSSH--HHHHHHHHHHHHHGG-GSCCCEEEECCGGGGTTCSEE
T ss_pred CEEEEEC-cCHHHHHHHHHHHhCCCCC-----EEEEEeccc--ccccchhcccccccc-ccccccccCCcHHHhcCCCEE
Confidence 6999999 5999999999999888764 999999964 578999999998643 223333344457889999999
Q ss_pred EEecCCCCCCCCChhHHHhhhHHHHHHHHHHHHhhcCCCcEEEEEeCChhhHHHHHHHHCCCCCCCcEEE
Q 019990 86 VMVGGFPRKEGMERKDVMSKNVSIYKAQASALEKHAAPNCKVLVVANPANTNALILKEFAPSIPAKNITC 155 (332)
Q Consensus 86 i~~ag~~~~~~~~~~~~~~~N~~~~~~i~~~i~~~~~~~~~viv~snp~~~~~~~~~~~~~~~~~~~i~~ 155 (332)
|++||.++++|++|.+++..|+++++++++.+.+++ |+++++++|||+|.+++++++. +++|++|++|
T Consensus 72 vitag~~~~~g~~r~dl~~~N~~I~~~i~~~i~~~~-p~aivivvtNPvd~~t~~~~k~-sg~p~~rViG 139 (140)
T d1a5za1 72 IVAAGVPQKPGETRLQLLGRNARVMKEIARNVSKYA-PDSIVIVVTNPVDVLTYFFLKE-SGMDPRKVFG 139 (140)
T ss_dssp EECCCCCCCSSCCHHHHHHHHHHHHHHHHHHHHHHC-TTCEEEECSSSHHHHHHHHHHH-HTCCTTTEEE
T ss_pred EEecccccCCCcchhhhhccccchHHHHHHHHHhcC-CCcEEEEeCCcHHHHHHHHHHH-HCcCccceeC
Confidence 999999999999999999999999999999999998 8999999999999999999998 7999999765
|
| >d2cmda1 c.2.1.5 (A:1-145) Malate dehydrogenase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Malate dehydrogenase species: Escherichia coli [TaxId: 562]
Probab=99.95 E-value=2.5e-27 Score=190.48 Aligned_cols=141 Identities=27% Similarity=0.386 Sum_probs=118.8
Q ss_pred cEEEEEcCCChhHHHHHHHHHhc-ccCCCCCCeEEEEEecccchhhhhhhHhhhhhhccCCccceEEeCCHHHHhCCCcE
Q 019990 6 LRVLVTGAAGQIGYALVPMIARG-IMLGPDQPVILHMLDIEPAAEALNGVKMELIDAAFPLLKGVVATTDVVEACKDVNI 84 (332)
Q Consensus 6 ~kI~VtGaaG~IGs~l~~~L~~~-~~~~~~~~~~i~l~D~~~~~~~~~~~~~dl~~~~~~~~~~v~~~~~~~~a~~~aDi 84 (332)
|||+|+||+|+||+++++.|+.+ ++.. |++|+|+.+ .+.|.++|+.|...+.........+.+++++++|+
T Consensus 1 MKV~IiGaaG~VG~~~a~~l~~~~~~~~-----el~L~D~~~---~~~g~a~Dl~h~~~~~~~~~~~~~~~~~~~~~aDv 72 (145)
T d2cmda1 1 MKVAVLGAAGGIGQALALLLKTQLPSGS-----ELSLYDIAP---VTPGVAVDLSHIPTAVKIKGFSGEDATPALEGADV 72 (145)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHHSCTTC-----EEEEECSST---THHHHHHHHHTSCSSCEEEEECSSCCHHHHTTCSE
T ss_pred CEEEEEcCCChHHHHHHHHHHhCCCCCc-----EEEEecccc---cchhHHHHHHCCccccCCcEEEcCCCccccCCCCE
Confidence 68999998899999999988754 5543 999999853 56789999999765543333333445678999999
Q ss_pred EEEecCCCCCCCCChhHHHhhhHHHHHHHHHHHHhhcCCCcEEEEEeCChhhHHHHHHHH---CCCCCCCcEEE
Q 019990 85 AVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEKHAAPNCKVLVVANPANTNALILKEF---APSIPAKNITC 155 (332)
Q Consensus 85 Vi~~ag~~~~~~~~~~~~~~~N~~~~~~i~~~i~~~~~~~~~viv~snp~~~~~~~~~~~---~~~~~~~~i~~ 155 (332)
||++||.+++++++|.+++..|.++++++++++.+++ |++.++++|||+|+|++++++. .+.||++|++|
T Consensus 73 vvitaG~~~k~g~~R~dl~~~N~~i~~~v~~~i~~~~-p~aivivvtNPvD~m~~~~~~v~~~~~~l~~~RviG 145 (145)
T d2cmda1 73 VLISAGVRRKPGMDRSDLFNVNAGIVKNLVQQVAKTC-PKACIGIITNPVNTTVAIAAEVLKKAGVYDKNKLFG 145 (145)
T ss_dssp EEECCSCCCCTTCCGGGGHHHHHHHHHHHHHHHHHHC-TTSEEEECSSSHHHHHHHHHHHHHHTTCCCGGGEEE
T ss_pred EEECCCccCCCCcchhhHHHHHHHHHHHHHHHHHhhC-CCcEEEEccCCchHHHHHHHHHHHHcCCCChhhccC
Confidence 9999999999999999999999999999999999998 8999999999999999987753 35689988765
|
| >d1hyha1 c.2.1.5 (A:21-166) L-2-hydroxyisocapronate dehydrogenase, L-HICDH {Lactobacillus confusus [TaxId: 1583]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: L-2-hydroxyisocapronate dehydrogenase, L-HICDH species: Lactobacillus confusus [TaxId: 1583]
Probab=99.95 E-value=1.7e-27 Score=191.71 Aligned_cols=141 Identities=13% Similarity=0.184 Sum_probs=116.5
Q ss_pred CcEEEEEcCCChhHHHHHHHHHhcccCCCCCCeEEEEEecccchhhhhhhHhhhhhhccCCccceEEeCCHHHHhCCCcE
Q 019990 5 PLRVLVTGAAGQIGYALVPMIARGIMLGPDQPVILHMLDIEPAAEALNGVKMELIDAAFPLLKGVVATTDVVEACKDVNI 84 (332)
Q Consensus 5 ~~kI~VtGaaG~IGs~l~~~L~~~~~~~~~~~~~i~l~D~~~~~~~~~~~~~dl~~~~~~~~~~v~~~~~~~~a~~~aDi 84 (332)
.+||.|+| +|.||+++++.|+.+++++ |++|+|+++ +++++..+|+.|.......+.....+.++++++||+
T Consensus 1 ~kKI~IIG-aG~VG~~~a~~l~~~~~~~-----elvL~Di~~--~~~~g~~~Dl~~a~~~~~~~~~~~~~d~~~l~~adi 72 (146)
T d1hyha1 1 ARKIGIIG-LGNVGAAVAHGLIAQGVAD-----DYVFIDANE--AKVKADQIDFQDAMANLEAHGNIVINDWAALADADV 72 (146)
T ss_dssp CCEEEEEC-CSHHHHHHHHHHHHHTCCS-----EEEEECSSH--HHHHHHHHHHHHHGGGSSSCCEEEESCGGGGTTCSE
T ss_pred CCeEEEEC-cCHHHHHHHHHHHhcCCCc-----eEEEEeccc--chhhhHHHhhhccccccCCccceeccCHHHhccccE
Confidence 37999999 6999999999999988765 999999964 578899999999754333333333344678999999
Q ss_pred EEEecCCCC----CCCCChhHHHhhhHHHHHHHHHHHHhhcCCCcEEEEEeCChhhHHHHHHHHCCCCCCCcEEE
Q 019990 85 AVMVGGFPR----KEGMERKDVMSKNVSIYKAQASALEKHAAPNCKVLVVANPANTNALILKEFAPSIPAKNITC 155 (332)
Q Consensus 85 Vi~~ag~~~----~~~~~~~~~~~~N~~~~~~i~~~i~~~~~~~~~viv~snp~~~~~~~~~~~~~~~~~~~i~~ 155 (332)
||++||.++ +++++|.+++..|+++++++++.+++++ |+++++++|||+|++++++++. +++|++|++|
T Consensus 73 VVitaG~~~~~~~~~g~~R~~l~~~N~~i~~~i~~~i~~~~-p~aivivvtNPvD~~t~~~~k~-sg~p~~rViG 145 (146)
T d1hyha1 73 VISTLGNIKLQQDNPTGDRFAELKFTSSMVQSVGTNLKESG-FHGVLVVISNPVDVITALFQHV-TGFPAHKVIG 145 (146)
T ss_dssp EEECCSCGGGTC-------CTTHHHHHHHHHHHHHHHHHTT-CCSEEEECSSSHHHHHHHHHHH-HCCCGGGEEE
T ss_pred EEEeccccccccccCCccHHHHHHHHHHHHHHHHHHHhhcC-CCeEEEEecCcHHHHHHHHHHH-hCCCccceeC
Confidence 999999876 5678899999999999999999999998 8999999999999999999998 8999999765
|
| >d1y6ja1 c.2.1.5 (A:7-148) Lactate dehydrogenase {Clostridium thermocellum [TaxId: 1515]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Lactate dehydrogenase species: Clostridium thermocellum [TaxId: 1515]
Probab=99.95 E-value=2.9e-27 Score=189.72 Aligned_cols=140 Identities=23% Similarity=0.309 Sum_probs=114.5
Q ss_pred cEEEEEcCCChhHHHHHHHHHhcccCCCCCCeEEEEEecccchhhhhhhHhhhhhhccCCccceEEeCCHHHHhCCCcEE
Q 019990 6 LRVLVTGAAGQIGYALVPMIARGIMLGPDQPVILHMLDIEPAAEALNGVKMELIDAAFPLLKGVVATTDVVEACKDVNIA 85 (332)
Q Consensus 6 ~kI~VtGaaG~IGs~l~~~L~~~~~~~~~~~~~i~l~D~~~~~~~~~~~~~dl~~~~~~~~~~v~~~~~~~~a~~~aDiV 85 (332)
+||+|+| +|+||+++++.|+.+++.+ |++|+|+++ +++++.++||.|... .........+.++++++||+|
T Consensus 2 ~KI~IIG-aG~VG~~~a~~l~~~~l~~-----el~L~D~~~--~~~~g~a~Dl~~~~~-~~~~~~~~~~~~~~~~~adiv 72 (142)
T d1y6ja1 2 SKVAIIG-AGFVGASAAFTMALRQTAN-----ELVLIDVFK--EKAIGEAMDINHGLP-FMGQMSLYAGDYSDVKDCDVI 72 (142)
T ss_dssp CCEEEEC-CSHHHHHHHHHHHHTTCSS-----EEEEECCC-----CCHHHHHHTTSCC-CTTCEEEC--CGGGGTTCSEE
T ss_pred CeEEEEC-CCHHHHHHHHHHHhcCCCC-----EEEEEeccC--CccceeeeeeccCcc-cCCCeeEeeCcHHHhCCCceE
Confidence 5899999 5999999999999988865 999999875 477899999999643 333444445557889999999
Q ss_pred EEecCCCCCCCCChhHHHhhhHHHHHHHHHHHHhhcCCCcEEEEEeCChhhHHHHHHHHCCCCCCCcEEEe
Q 019990 86 VMVGGFPRKEGMERKDVMSKNVSIYKAQASALEKHAAPNCKVLVVANPANTNALILKEFAPSIPAKNITCL 156 (332)
Q Consensus 86 i~~ag~~~~~~~~~~~~~~~N~~~~~~i~~~i~~~~~~~~~viv~snp~~~~~~~~~~~~~~~~~~~i~~~ 156 (332)
|++||.+++++++|.+++..|+++++++++.+.+++ |+++++++|||+|++++++++. +++|++|++|.
T Consensus 73 vitag~~~~~~~~r~~l~~~N~~i~~~i~~~i~~~~-p~ai~ivvtNPvdv~t~~~~k~-sg~p~~rViG~ 141 (142)
T d1y6ja1 73 VVTAGANRKPGETRLDLAKKNVMIAKEVTQNIMKYY-NHGVILVVSNPVDIITYMIQKW-SGLPVGKVIGS 141 (142)
T ss_dssp EECCCC------CHHHHHHHHHHHHHHHHHHHHHHC-CSCEEEECSSSHHHHHHHHHHH-HTCCTTTEEEC
T ss_pred EEecccccCcCcchhHHhhHHHHHHHHHHHHhhccC-CCceEEEecChHHHHHHHHHHH-HCCCccceecC
Confidence 999999999999999999999999999999999998 8999999999999999999998 89999997663
|
| >d1ez4a1 c.2.1.5 (A:16-162) Lactate dehydrogenase {Lactobacillus pentosus [TaxId: 1589]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Lactate dehydrogenase species: Lactobacillus pentosus [TaxId: 1589]
Probab=99.95 E-value=3e-27 Score=190.46 Aligned_cols=144 Identities=22% Similarity=0.352 Sum_probs=114.7
Q ss_pred CCCCCcEEEEEcCCChhHHHHHHHHHhcccCCCCCCeEEEEEecccchhhhhhhHhhhhhhccCCccceEEeCCHHHHhC
Q 019990 1 MAKNPLRVLVTGAAGQIGYALVPMIARGIMLGPDQPVILHMLDIEPAAEALNGVKMELIDAAFPLLKGVVATTDVVEACK 80 (332)
Q Consensus 1 m~~~~~kI~VtGaaG~IGs~l~~~L~~~~~~~~~~~~~i~l~D~~~~~~~~~~~~~dl~~~~~~~~~~v~~~~~~~~a~~ 80 (332)
|++ .+||.|+| +|+||+++++.|+..++.+ |++|+|+++ ++++|.++|+.|.............+ +++++
T Consensus 2 m~~-~~KI~IIG-aG~VG~~~A~~l~~~~~~~-----elvL~D~~~--~~~~g~a~Dl~~a~~~~~~~~~~~~d-~~~~~ 71 (146)
T d1ez4a1 2 MPN-HQKVVLVG-DGAVGSSYAFAMAQQGIAE-----EFVIVDVVK--DRTKGDALDLEDAQAFTAPKKIYSGE-YSDCK 71 (146)
T ss_dssp BTT-BCEEEEEC-CSHHHHHHHHHHHHHTCCS-----EEEEECSSH--HHHHHHHHHHHGGGGGSCCCEEEECC-GGGGT
T ss_pred CCC-CCEEEEEC-CCHHHHHHHHHHHhcCCCc-----EEEEeeccc--chhHHHHHHHhccccccCCceEeecc-HHHhc
Confidence 543 56999999 5999999999999988754 999999864 57889999999976433333333445 57799
Q ss_pred CCcEEEEecCCCCCCCCChhHHHhhhHHHHHHHHHHHHhhcCCCcEEEEEeCChhhHHHHHHHHCCCCCCCcEEEe
Q 019990 81 DVNIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEKHAAPNCKVLVVANPANTNALILKEFAPSIPAKNITCL 156 (332)
Q Consensus 81 ~aDiVi~~ag~~~~~~~~~~~~~~~N~~~~~~i~~~i~~~~~~~~~viv~snp~~~~~~~~~~~~~~~~~~~i~~~ 156 (332)
+||+||+++|.+++++++|.+++..|+++++++++.+.+++ |+++++++|||+|++++++++. +++|++|++|.
T Consensus 72 ~adivvitag~~~~~g~~r~~l~~~N~~i~~~~~~~i~~~~-p~aivivvtNPvdv~t~~~~k~-sg~p~~rViG~ 145 (146)
T d1ez4a1 72 DADLVVITAGAPQKPGESRLDLVNKNLNILSSIVKPVVDSG-FDGIFLVAANPVDILTYATWKF-SGFPKERVIGS 145 (146)
T ss_dssp TCSEEEECCCC----------CHHHHHHHHHHHHHHHHHTT-CCSEEEECSSSHHHHHHHHHHH-HCCCGGGEEEC
T ss_pred cccEEEEecccccCCCCCHHHHHHHHHHHHHHHHHHHhhcC-CCcEEEEeCCccHHHHHHHHHH-HCcCccceecC
Confidence 99999999999999999999999999999999999999998 8999999999999999999998 89999997663
|
| >d1mlda1 c.2.1.5 (A:1-144) Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Malate dehydrogenase species: Pig (Sus scrofa) [TaxId: 9823]
Probab=99.95 E-value=5.1e-27 Score=188.51 Aligned_cols=140 Identities=26% Similarity=0.428 Sum_probs=120.1
Q ss_pred cEEEEEcCCChhHHHHHHHHHhcccCCCCCCeEEEEEecccchhhhhhhHhhhhhhccCCc-cceEEeCCHHHHhCCCcE
Q 019990 6 LRVLVTGAAGQIGYALVPMIARGIMLGPDQPVILHMLDIEPAAEALNGVKMELIDAAFPLL-KGVVATTDVVEACKDVNI 84 (332)
Q Consensus 6 ~kI~VtGaaG~IGs~l~~~L~~~~~~~~~~~~~i~l~D~~~~~~~~~~~~~dl~~~~~~~~-~~v~~~~~~~~a~~~aDi 84 (332)
.||+|+||+|+||+++++.|+.+++++ |++|+|++. .++..+|+.|...... .......+.++++++||+
T Consensus 1 sKv~IiGA~G~VG~~~A~~l~~~~~~~-----elvLiDi~~----~~~~a~Dl~~~~~~~~~~~~~~~~~~~~~~~~aDi 71 (144)
T d1mlda1 1 AKVAVLGASGGIGQPLSLLLKNSPLVS-----RLTLYDIAH----TPGVAADLSHIETRATVKGYLGPEQLPDCLKGCDV 71 (144)
T ss_dssp CEEEEETTTSTTHHHHHHHHHTCTTCS-----EEEEEESSS----HHHHHHHHTTSSSSCEEEEEESGGGHHHHHTTCSE
T ss_pred CeEEEECCCChHHHHHHHHHHhCCccc-----eEEEEeccc----cchhhHHHhhhhhhcCCCeEEcCCChHHHhCCCCE
Confidence 389999988999999999999999875 999999853 4678899998764433 233345677889999999
Q ss_pred EEEecCCCCCCCCChhHHHhhhHHHHHHHHHHHHhhcCCCcEEEEEeCChhhHHHHHHH---HCCCCCCCcEEE
Q 019990 85 AVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEKHAAPNCKVLVVANPANTNALILKE---FAPSIPAKNITC 155 (332)
Q Consensus 85 Vi~~ag~~~~~~~~~~~~~~~N~~~~~~i~~~i~~~~~~~~~viv~snp~~~~~~~~~~---~~~~~~~~~i~~ 155 (332)
||++||.+++++++|.+++..|+++++++++.+.+++ |+++++++|||+|.+++++++ ..++||++|++|
T Consensus 72 vVitag~~~~~g~sR~~ll~~N~~i~~~i~~~i~~~~-p~~iiivvtNPvD~~t~~~~~~~kk~~~~p~~rViG 144 (144)
T d1mlda1 72 VVIPAGVPRKPGMTRDDLFNTNATIVATLTAACAQHC-PDAMICIISNPVNSTIPITAEVFKKHGVYNPNKIFG 144 (144)
T ss_dssp EEECCSCCCCTTCCGGGGHHHHHHHHHHHHHHHHHHC-TTSEEEECSSCHHHHHHHHHHHHHHTTCCCTTSEEE
T ss_pred EEECCCcCCCCCCCcchHHHHHHHHHHHHHHHHHhcC-CCeEEEEecCchhhhHHHHHHHHHHhcCCCcccccC
Confidence 9999999999999999999999999999999999997 899999999999998887653 236799999765
|
| >d2cmda2 d.162.1.1 (A:146-312) Malate dehydrogenase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: LDH C-terminal domain-like superfamily: LDH C-terminal domain-like family: Lactate & malate dehydrogenases, C-terminal domain domain: Malate dehydrogenase species: Escherichia coli [TaxId: 562]
Probab=99.95 E-value=1.7e-27 Score=197.19 Aligned_cols=161 Identities=16% Similarity=0.141 Sum_probs=126.9
Q ss_pred eecccHHHHHHHHHHHcCCCCCCeeeeEEEecCC-CceeecccCcccccCCCCcchhhhccccccchhHHHHHHHhhHHH
Q 019990 156 LTRLDHNRAMGQISERLKVHVSDVKNVIIWGNHS-STQYPDVNHATVTTSKGEKPVREAVADDNWLNTEFITTVQQRGAA 234 (332)
Q Consensus 156 ~t~l~~~r~~~~~a~~~~v~~~~v~~~~V~G~hg-~~~v~~~s~~~v~~~~~~~p~~~~~~~~~~~~~~~~~~v~~~~~~ 234 (332)
+|.||+.|+++++|+++|++|.+|++++ +|+|| .+++|++|++.. .+ + ..|..+++.+.+|+++.+
T Consensus 1 ~T~LDs~R~~~~iA~~l~v~~~~V~~~V-iGghg~~~~~p~~s~~~~----~~--~------~~~~~~~l~~~v~~~g~~ 67 (167)
T d2cmda2 1 VTTLDIIRSNTFVAELKGKQPGEVEVPV-IGGHSGVTILPLLSQVPG----VS--F------TEQEVADLTKRIQNAGTE 67 (167)
T ss_dssp CCHHHHHHHHHHHHHHHTCCGGGCCCCE-EECSSTTTEEECGGGCTT----CC--C------CHHHHHHHHHHHHHHHHH
T ss_pred CcccHHHHHHHHHHHHHCcCHHHeEEEE-EEcCCCceEeeecccccC----CC--C------cHHHHHHHHHHHHhhhhh
Confidence 4789999999999999999999999985 68887 566666665543 22 1 123567899999999999
Q ss_pred HHHhcCC--cchHHHHHHHHHHHHHHHcCCCCCcEEEEEEeecCCCCCCCCeEEEEeEEEe-CCeEEEecCC-CCCHHHH
Q 019990 235 IIKARKL--SSALSAASSACDHIRDWVLGTPKGTWVSMGVYSDGSYGIPEGLIYSFPVTCE-KGEWSIVKGL-KVDEFSR 310 (332)
Q Consensus 235 i~~~~g~--~~~~~~a~a~~~~i~~~~~~~~~~~i~~~~v~~~g~yg~~~~~~~s~Pv~~~-~G~~~~~~~~-~l~~~E~ 310 (332)
+++.++. +.++++|+++++++...+.+ .+...++++.+.++|+.+.++|||+||+++ +|++++++ + +|+++|+
T Consensus 68 ii~~~~~~~~~~~~~a~a~~~~~~~i~~~--~~~~~~~~~~~~~~~~~~~~i~~s~P~~ig~~Gv~~v~~-l~~L~~~E~ 144 (167)
T d2cmda2 68 VVEAKAGGGSATLSMGQAAARFGLSLVRA--LQGEQGVVECAYVEGDGQYARFFSQPLLLGKNGVEERKS-IGTLSAFEQ 144 (167)
T ss_dssp HHHHHTTSCSCCHHHHHHHHHHHHHHHHH--HTTCSSCEEEEEEECCCSSCSEEEEEEEEETTEEEEECC-CCCCCHHHH
T ss_pred hhhhhccCcchHHHHHHHHHHHHHHHhcc--CCCceEEEEEcccccccCCCccccccEEEeCCceEEEee-CCCCCHHHH
Confidence 9987742 33467778877665554432 123445556666778877789999999999 99999996 6 6999999
Q ss_pred HHHHHHHHHHHHHHHHHhhhhC
Q 019990 311 AKMDATAEELAEEKTLAYSCLN 332 (332)
Q Consensus 311 ~~l~~s~~~i~~~~~~~~~~~~ 332 (332)
++|++|+++|++.|+++++|++
T Consensus 145 ~~l~~s~~~lk~~I~~~~~fi~ 166 (167)
T d2cmda2 145 NALEGMLDTLKKDIALGQEFVN 166 (167)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhc
Confidence 9999999999999999999974
|
| >d2ldxa1 c.2.1.5 (A:1-159) Lactate dehydrogenase {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Lactate dehydrogenase species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.94 E-value=2.5e-27 Score=192.92 Aligned_cols=142 Identities=20% Similarity=0.383 Sum_probs=124.2
Q ss_pred CCcEEEEEcCCChhHHHHHHHHHhcccCCCCCCeEEEEEecccchhhhhhhHhhhhhhccCCccceEEeCCHHHHhCCCc
Q 019990 4 NPLRVLVTGAAGQIGYALVPMIARGIMLGPDQPVILHMLDIEPAAEALNGVKMELIDAAFPLLKGVVATTDVVEACKDVN 83 (332)
Q Consensus 4 ~~~kI~VtGaaG~IGs~l~~~L~~~~~~~~~~~~~i~l~D~~~~~~~~~~~~~dl~~~~~~~~~~v~~~~~~~~a~~~aD 83 (332)
+..||+|+| +|.||+++++.|+..++++ |++|+|+++ +++.|.++||.|.............+.+++++++|
T Consensus 18 ~~~KI~IIG-aG~VG~~~A~~l~~~~l~~-----elvL~D~~~--~~a~g~alDl~~~~~~~~~~~~~~~~d~~~~~~ad 89 (159)
T d2ldxa1 18 SRCKITVVG-VGDVGMACAISILLKGLAD-----ELALVDADT--DKLRGEALDLQHGSLFLSTPKIVFGKDYNVSANSK 89 (159)
T ss_dssp CCCEEEEEC-CSHHHHHHHHHHHTTTSCS-----EEEEECSCH--HHHHHHHHHHHHTTTTCSCCEEEEESSGGGGTTEE
T ss_pred CCCeEEEEC-CCHHHHHHHHHHHhcCCCC-----EEEEEeCCc--hhhhccHHHHhCcchhcCCCeEEeccchhhhcccc
Confidence 346999999 5999999999999998865 999999864 57889999999976444333333334467899999
Q ss_pred EEEEecCCCCCCCCChhHHHhhhHHHHHHHHHHHHhhcCCCcEEEEEeCChhhHHHHHHHHCCCCCCCcEEE
Q 019990 84 IAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEKHAAPNCKVLVVANPANTNALILKEFAPSIPAKNITC 155 (332)
Q Consensus 84 iVi~~ag~~~~~~~~~~~~~~~N~~~~~~i~~~i~~~~~~~~~viv~snp~~~~~~~~~~~~~~~~~~~i~~ 155 (332)
+||++||.+++++++|.+++..|+++++++++.+.+++ |+++++++|||+|++++++++. +++|++|++|
T Consensus 90 ivvitag~~~~~~~~R~dll~~N~~i~~~i~~~i~~~~-p~~ivivvtNPvDv~t~~~~k~-sg~p~~rV~G 159 (159)
T d2ldxa1 90 LVIITAGARMVSGQTRLDLLQRNVAIMKAIVPGVIQNS-PDCKIIVVTNPVDILTYVVWKI-SGFPVGRVIG 159 (159)
T ss_dssp EEEECCSCCCCTTTCSSCTTHHHHHHHHHHTTTHHHHS-TTCEEEECSSSHHHHHHHHHHH-HCSCTTTEEE
T ss_pred EEEEecccccCCCCCHHHHHHHHHHHHHHHHHHHhccC-CCeEEEEeCCcHHHHHHHHHHH-HCcCcccccC
Confidence 99999999999999999999999999999999999997 8999999999999999999998 8999999875
|
| >d1guza1 c.2.1.5 (A:1-142) Malate dehydrogenase {Chlorobium vibrioforme [TaxId: 1098]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Malate dehydrogenase species: Chlorobium vibrioforme [TaxId: 1098]
Probab=99.94 E-value=9.2e-27 Score=187.31 Aligned_cols=140 Identities=24% Similarity=0.405 Sum_probs=121.5
Q ss_pred cEEEEEcCCChhHHHHHHHHHhcccCCCCCCeEEEEEecccchhhhhhhHhhhhhhcc--CCccceEEeCCHHHHhCCCc
Q 019990 6 LRVLVTGAAGQIGYALVPMIARGIMLGPDQPVILHMLDIEPAAEALNGVKMELIDAAF--PLLKGVVATTDVVEACKDVN 83 (332)
Q Consensus 6 ~kI~VtGaaG~IGs~l~~~L~~~~~~~~~~~~~i~l~D~~~~~~~~~~~~~dl~~~~~--~~~~~v~~~~~~~~a~~~aD 83 (332)
|||+|+| +|.||+++++.|+..++.+ |++|+|+++ +++.+..+|+.|... .....+....+ +++++++|
T Consensus 1 mKI~IIG-aG~VG~~la~~l~~~~l~~-----el~L~Di~~--~~~~~~~~d~~~~~~~~~~~~~i~~~~~-~~~~~dad 71 (142)
T d1guza1 1 MKITVIG-AGNVGATTAFRLAEKQLAR-----ELVLLDVVE--GIPQGKALDMYESGPVGLFDTKVTGSND-YADTANSD 71 (142)
T ss_dssp CEEEEEC-CSHHHHHHHHHHHHTTCCS-----EEEEECSSS--SHHHHHHHHHHTTHHHHTCCCEEEEESC-GGGGTTCS
T ss_pred CEEEEEC-cCHHHHHHHHHHHhCCCCc-----eEEEecccc--ccchhhhhhhhcccchhcccceEEecCC-HHHhcCCe
Confidence 6899999 5999999999999988765 999999975 467788889887643 22234444444 67899999
Q ss_pred EEEEecCCCCCCCCChhHHHhhhHHHHHHHHHHHHhhcCCCcEEEEEeCChhhHHHHHHHHCCCCCCCcEEEe
Q 019990 84 IAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEKHAAPNCKVLVVANPANTNALILKEFAPSIPAKNITCL 156 (332)
Q Consensus 84 iVi~~ag~~~~~~~~~~~~~~~N~~~~~~i~~~i~~~~~~~~~viv~snp~~~~~~~~~~~~~~~~~~~i~~~ 156 (332)
+||++||.+++++++|.+++..|+++++++++.+.+++ |+++++++|||+|.+++++++. +++|++|++|+
T Consensus 72 vvvitag~~~~~g~~r~~l~~~N~~i~~~i~~~i~~~~-p~aivivvtNPvd~~~~~~~~~-sg~p~~rviG~ 142 (142)
T d1guza1 72 IVIITAGLPRKPGMTREDLLMKNAGIVKEVTDNIMKHS-KNPIIIVVSNPLDIMTHVAWVR-SGLPKERVIGM 142 (142)
T ss_dssp EEEECCSCCCCTTCCHHHHHHHHHHHHHHHHHHHHHHC-SSCEEEECCSSHHHHHHHHHHH-HCSCGGGEEEE
T ss_pred EEEEEEecCCCCCCchHHHHHHHHHHHHHHHHHhhccC-CCeEEEEecCChHHHHHHHHHH-hCCChHhEeeC
Confidence 99999999999999999999999999999999999998 8999999999999999999998 79999998774
|
| >d1pzga1 c.2.1.5 (A:14-163) Lactate dehydrogenase {Toxoplasma gondii [TaxId: 5811]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Lactate dehydrogenase species: Toxoplasma gondii [TaxId: 5811]
Probab=99.94 E-value=3.3e-26 Score=186.12 Aligned_cols=145 Identities=19% Similarity=0.277 Sum_probs=125.8
Q ss_pred CCCCCcEEEEEcCCChhHHHHHHHHHhcccCCCCCCeEEEEEecccchhhhhhhHhhhhhhccC--CccceEEeCCHHHH
Q 019990 1 MAKNPLRVLVTGAAGQIGYALVPMIARGIMLGPDQPVILHMLDIEPAAEALNGVKMELIDAAFP--LLKGVVATTDVVEA 78 (332)
Q Consensus 1 m~~~~~kI~VtGaaG~IGs~l~~~L~~~~~~~~~~~~~i~l~D~~~~~~~~~~~~~dl~~~~~~--~~~~v~~~~~~~~a 78 (332)
|.++++||+|+| +|.||+++++.|...++. +++|+|+++ +++.+.++|+.|.... ....+....+.+++
T Consensus 3 ~~~k~~KI~IIG-aG~VG~~lA~~l~~~~~~------el~L~D~~~--~~~~g~a~Dl~~~~~~~~~~~~~~~~~~~~~~ 73 (154)
T d1pzga1 3 LVQRRKKVAMIG-SGMIGGTMGYLCALRELA------DVVLYDVVK--GMPEGKALDLSHVTSVVDTNVSVRAEYSYEAA 73 (154)
T ss_dssp CCSCCCEEEEEC-CSHHHHHHHHHHHHHTCC------EEEEECSSS--SHHHHHHHHHHHHHHHTTCCCCEEEECSHHHH
T ss_pred cccCCCcEEEEC-CCHHHHHHHHHHHhCCCc------eEEEEEecc--ccchhHHHHHhhhccccCCeeEEeccCchhhh
Confidence 556789999999 599999999998887762 899999875 5788999999986432 23445556777889
Q ss_pred hCCCcEEEEecCCCCCCCC-----ChhHHHhhhHHHHHHHHHHHHhhcCCCcEEEEEeCChhhHHHHHHHHCCCCCCCcE
Q 019990 79 CKDVNIAVMVGGFPRKEGM-----ERKDVMSKNVSIYKAQASALEKHAAPNCKVLVVANPANTNALILKEFAPSIPAKNI 153 (332)
Q Consensus 79 ~~~aDiVi~~ag~~~~~~~-----~~~~~~~~N~~~~~~i~~~i~~~~~~~~~viv~snp~~~~~~~~~~~~~~~~~~~i 153 (332)
++++|+|++++|.++++|+ +|.+++..|+++++++++.+.+++ |+++++++|||+|.+++++++. ++||++|+
T Consensus 74 ~~~adiVvitag~~~~~g~~~~~~tR~~l~~~n~~iv~~i~~~i~~~~-p~aiviivsNPvd~lt~~~~~~-sg~p~~rV 151 (154)
T d1pzga1 74 LTGADCVIVTAGLTKVPGKPDSEWSRNDLLPFNSKIIREIGQNIKKYC-PKTFIIVVTNPLDCMVKVMCEA-SGVPTNMI 151 (154)
T ss_dssp HTTCSEEEECCSCSSCTTCCGGGCCGGGGHHHHHHHHHHHHHHHHHHC-TTCEEEECCSSHHHHHHHHHHH-HCCCGGGE
T ss_pred hcCCCeEEEecccccCCCCCCcccchhhhhhhhHHHHHHHHHHHHhcC-CCcEEEEeCCcHHHHHHHHHHH-hCcChhcE
Confidence 9999999999999998874 889999999999999999999998 8999999999999999999998 89999998
Q ss_pred EEe
Q 019990 154 TCL 156 (332)
Q Consensus 154 ~~~ 156 (332)
+|+
T Consensus 152 iG~ 154 (154)
T d1pzga1 152 CGM 154 (154)
T ss_dssp EEC
T ss_pred ecC
Confidence 774
|
| >d1uxja1 c.2.1.5 (A:2-143) Malate dehydrogenase {Chloroflexus aurantiacus [TaxId: 1108]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Malate dehydrogenase species: Chloroflexus aurantiacus [TaxId: 1108]
Probab=99.93 E-value=2.9e-26 Score=184.01 Aligned_cols=138 Identities=24% Similarity=0.376 Sum_probs=112.3
Q ss_pred cEEEEEcCCChhHHHHHHHHHhcccCCCCCCeEEEEEecccchhhhhhhHhhhhhhccC--CccceEEeCCHHHHhCCCc
Q 019990 6 LRVLVTGAAGQIGYALVPMIARGIMLGPDQPVILHMLDIEPAAEALNGVKMELIDAAFP--LLKGVVATTDVVEACKDVN 83 (332)
Q Consensus 6 ~kI~VtGaaG~IGs~l~~~L~~~~~~~~~~~~~i~l~D~~~~~~~~~~~~~dl~~~~~~--~~~~v~~~~~~~~a~~~aD 83 (332)
+||+|+| +|.||+++++.|+.+++. +++|+|+++ +++.+.++|+.|.... ....+....+ +++++++|
T Consensus 2 ~KI~IIG-aG~VG~~~A~~l~~~~l~------dl~l~D~~~--~~~~~~~~Dl~~~~~~~~~~~~i~~~~d-~~~~~~ad 71 (142)
T d1uxja1 2 KKISIIG-AGFVGSTTAHWLAAKELG------DIVLLDIVE--GVPQGKALDLYEASPIEGFDVRVTGTNN-YADTANSD 71 (142)
T ss_dssp CEEEEEC-CSHHHHHHHHHHHHHTCS------EEEEECSSS--SHHHHHHHHHHTTHHHHTCCCCEEEESC-GGGGTTCS
T ss_pred CeEEEEC-CCHHHHHHHHHHHhCCcc------eEEEEeecc--ccchhHHHHhhccccccCCCCEEEecCc-HHHhcCCC
Confidence 6999999 599999999999888763 899999865 4678899999887532 2334555555 56799999
Q ss_pred EEEEecCCCCCCCCChhHHHhhhHHHHHHHHHHHHhhcCCCcEEEEEeCChhhHHHHHHHHCCCCCCCcEEE
Q 019990 84 IAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEKHAAPNCKVLVVANPANTNALILKEFAPSIPAKNITC 155 (332)
Q Consensus 84 iVi~~ag~~~~~~~~~~~~~~~N~~~~~~i~~~i~~~~~~~~~viv~snp~~~~~~~~~~~~~~~~~~~i~~ 155 (332)
+||++||.+++++++|.+++..|+++++++++.+.+++ |+++++++|||+|++++++++. ++||++|++|
T Consensus 72 vvvitag~~~~~~~~r~dl~~~N~~i~~~i~~~i~k~~-p~aivivvtNPvDv~t~~~~~~-sglp~~rViG 141 (142)
T d1uxja1 72 VIVVTSGAPRKPGMSREDLIKVNADITRACISQAAPLS-PNAVIIMVNNPLDAMTYLAAEV-SGFPKERVIG 141 (142)
T ss_dssp EEEECCSCC---------CHHHHHHHHHHHHHHHGGGC-TTCEEEECSSSHHHHHHHHHHH-HCCCGGGEEE
T ss_pred EEEEeeeccCCcCcchhHHHhHHHHHHHHHHHHHhccC-CCceEEEeCCchHHHHHHHHHH-HCcCcccccC
Confidence 99999999999999999999999999999999999997 8999999999999999999998 8999999876
|
| >d1t2da1 c.2.1.5 (A:1-150) Lactate dehydrogenase {Malaria parasite (Plasmodium falciparum) [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Lactate dehydrogenase species: Malaria parasite (Plasmodium falciparum) [TaxId: 5833]
Probab=99.93 E-value=2.1e-25 Score=180.17 Aligned_cols=140 Identities=19% Similarity=0.377 Sum_probs=119.4
Q ss_pred CcEEEEEcCCChhHHHHHHHHHhcccCCCCCCeEEEEEecccchhhhhhhHhhhhhhccCC--ccceEEeCCHHHHhCCC
Q 019990 5 PLRVLVTGAAGQIGYALVPMIARGIMLGPDQPVILHMLDIEPAAEALNGVKMELIDAAFPL--LKGVVATTDVVEACKDV 82 (332)
Q Consensus 5 ~~kI~VtGaaG~IGs~l~~~L~~~~~~~~~~~~~i~l~D~~~~~~~~~~~~~dl~~~~~~~--~~~v~~~~~~~~a~~~a 82 (332)
..||.|+| +|.||+++++.|+.+++ .|++|+|+++ +++++.++|+.|..... ...+... +.+++++++
T Consensus 3 ~~KI~IIG-aG~VG~~~a~~l~~~~l------~el~L~Di~~--~~~~g~a~Dl~~~~~~~~~~~~v~~~-~~~~~~~~a 72 (150)
T d1t2da1 3 KAKIVLVG-SGMIGGVMATLIVQKNL------GDVVLFDIVK--NMPHGKALDTSHTNVMAYSNCKVSGS-NTYDDLAGA 72 (150)
T ss_dssp CCEEEEEC-CSHHHHHHHHHHHHTTC------CEEEEECSSS--SHHHHHHHHHHTHHHHHTCCCCEEEE-CCGGGGTTC
T ss_pred CCeEEEEC-CCHHHHHHHHHHHhCCC------CeEEEEeccC--CcceeeecchhhhccccCCCcEEEec-ccccccCCC
Confidence 46999999 59999999998888775 2899999965 57889999999974322 2234433 456889999
Q ss_pred cEEEEecCCCCCCCCC-----hhHHHhhhHHHHHHHHHHHHhhcCCCcEEEEEeCChhhHHHHHHHHCCCCCCCcEEEe
Q 019990 83 NIAVMVGGFPRKEGME-----RKDVMSKNVSIYKAQASALEKHAAPNCKVLVVANPANTNALILKEFAPSIPAKNITCL 156 (332)
Q Consensus 83 DiVi~~ag~~~~~~~~-----~~~~~~~N~~~~~~i~~~i~~~~~~~~~viv~snp~~~~~~~~~~~~~~~~~~~i~~~ 156 (332)
|+||+++|.++++|++ |.+++..|+++++++++.+++++ |+++++++|||+|.|++++++. ++||++|++|.
T Consensus 73 dvvvitag~~~~~g~~~~~~~R~~l~~~N~~iv~~i~~~i~~~~-p~aivivvtNPvD~~t~~~~~~-sg~p~~rViG~ 149 (150)
T d1t2da1 73 DVVIVTAGFTKAPGKSDKEWNRDDLLPLNNKIMIEIGGHIKKNC-PNAFIIVVTNPVDVMVQLLHQH-SGVPKNKIIGL 149 (150)
T ss_dssp SEEEECCSCSSCTTCCSTTCCGGGGHHHHHHHHHHHHHHHHHHC-TTSEEEECSSSHHHHHHHHHHH-HCCCGGGEEEC
T ss_pred cEEEEecccccCCCCCccccchhHHHHHHHHHHHHHHHHHHhcC-CCeEEEEecCchHHHHHHHHHH-HCCCchheecc
Confidence 9999999999888765 88999999999999999999998 8999999999999999999998 89999997664
|
| >d1s6ya1 c.2.1.5 (A:4-172) 6-phospho-beta-glucosidase {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: 6-phospho-beta-glucosidase species: Bacillus stearothermophilus [TaxId: 1422]
Probab=99.81 E-value=8.5e-20 Score=150.26 Aligned_cols=143 Identities=13% Similarity=0.108 Sum_probs=107.7
Q ss_pred CcEEEEEcCCChhHHH--HHHHHHhcccCCCCCCeEEEEEecccchhhhhhhHhhhhhhcc----CCccceEEeCCHHHH
Q 019990 5 PLRVLVTGAAGQIGYA--LVPMIARGIMLGPDQPVILHMLDIEPAAEALNGVKMELIDAAF----PLLKGVVATTDVVEA 78 (332)
Q Consensus 5 ~~kI~VtGaaG~IGs~--l~~~L~~~~~~~~~~~~~i~l~D~~~~~~~~~~~~~dl~~~~~----~~~~~v~~~~~~~~a 78 (332)
++||+|+| +|.+|.. ++..+.....+. ..+|+|+|++++ +.++..+|+.+... .....+..++|.+++
T Consensus 1 k~KI~iIG-aGs~~~~~~~~~l~~~~~~~~---~~eI~L~Di~e~--~~~~~~~d~~~~~~~~~~~~~~~~~~~td~~~a 74 (169)
T d1s6ya1 1 RLKIATIG-GGSSYTPELVEGLIKRYHELP---VGELWLVDIPEG--KEKLEIVGALAKRMVEKAGVPIEIHLTLDRRRA 74 (169)
T ss_dssp CEEEEEET-TTCTTHHHHHHHHHHTTTTCC---EEEEEEECCGGG--HHHHHHHHHHHHHHHHHTTCCCEEEEESCHHHH
T ss_pred CcEEEEEC-CChhhHHHHHHHHHHhccccC---CCEEEEEcCCcc--HHHHHHHHHHHHHHHHhcCCCceeeecCCchhh
Confidence 47999999 5877654 444444332211 139999999753 44566677755321 223456678888999
Q ss_pred hCCCcEEEEecCCCCCCCCChhHH--------------------HhhhHHHHHHHHHHHHhhcCCCcEEEEEeCChhhHH
Q 019990 79 CKDVNIAVMVGGFPRKEGMERKDV--------------------MSKNVSIYKAQASALEKHAAPNCKVLVVANPANTNA 138 (332)
Q Consensus 79 ~~~aDiVi~~ag~~~~~~~~~~~~--------------------~~~N~~~~~~i~~~i~~~~~~~~~viv~snp~~~~~ 138 (332)
++|+|+||+++|.+++++++|+++ ..+|+++++++++.+++++ |+++++++|||+|.++
T Consensus 75 l~gaDvVv~ta~~~~~~~~~r~~~i~~~~gi~~~~t~g~~~~~~~~~n~~i~~~i~~~i~~~~-pda~~i~vtNPvdv~t 153 (169)
T d1s6ya1 75 LDGADFVTTQFRVGGLEARAKDERIPLKYGVIGQETNGPGGLFKGLRTIPVILDIIRDMEELC-PDAWLINFTNPAGMVT 153 (169)
T ss_dssp HTTCSEEEECCCTTHHHHHHHHHHTGGGGTCCCCSSSTHHHHHHHHHHHHHHHHHHHHHHHHC-TTCEEEECSSSHHHHH
T ss_pred cCCCCEEEEccccCCCCCeehhhhhhhhcCceeccccCcchhhhccccHHHHHHHHHHHhhcC-CCeEEEEeCChHHHHH
Confidence 999999999999887666665544 3579999999999999998 9999999999999999
Q ss_pred HHHHHHCCCCCCCcEEEee
Q 019990 139 LILKEFAPSIPAKNITCLT 157 (332)
Q Consensus 139 ~~~~~~~~~~~~~~i~~~t 157 (332)
++++++ +|++|++|+|
T Consensus 154 ~~~~k~---~p~~kviGlC 169 (169)
T d1s6ya1 154 EAVLRY---TKQEKVVGLC 169 (169)
T ss_dssp HHHHHH---CCCCCEEECC
T ss_pred HHHHHH---CCCCCEEeeC
Confidence 999997 4777888875
|
| >d1u8xx1 c.2.1.5 (X:3-169) Maltose-6'-phosphate glucosidase GlvA {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Maltose-6'-phosphate glucosidase GlvA species: Bacillus subtilis [TaxId: 1423]
Probab=99.79 E-value=2.2e-19 Score=146.92 Aligned_cols=141 Identities=17% Similarity=0.112 Sum_probs=108.6
Q ss_pred CCcEEEEEcCCChhHHHHHH-HHHh-cccCCCCCCeEEEEEecccchhhhhhhHhhhhhhcc--CCccceEEeCCHHHHh
Q 019990 4 NPLRVLVTGAAGQIGYALVP-MIAR-GIMLGPDQPVILHMLDIEPAAEALNGVKMELIDAAF--PLLKGVVATTDVVEAC 79 (332)
Q Consensus 4 ~~~kI~VtGaaG~IGs~l~~-~L~~-~~~~~~~~~~~i~l~D~~~~~~~~~~~~~dl~~~~~--~~~~~v~~~~~~~~a~ 79 (332)
+..||+|+| +|.+|.+.+. .|+. ...+ ...+|+|+|+++ +++++...++.+... .....+..+++.++++
T Consensus 2 k~~KI~iIG-aGsv~~~~~~~~ll~~~~~l---~~~eivL~Did~--~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~eal 75 (167)
T d1u8xx1 2 KSFSIVIAG-GGSTFTPGIVLMLLDHLEEF---PIRKLKLYDNDK--ERQDRIAGACDVFIREKAPDIEFAATTDPEEAF 75 (167)
T ss_dssp CCEEEEEEC-TTSSSHHHHHHHHHHTTTTS---CEEEEEEECSCH--HHHHHHHHHHHHHHHHHCTTSEEEEESCHHHHH
T ss_pred CCceEEEEC-CChhhhHHHHHHHHhhhhhc---CCCEEEEEcCCh--hHHHHHHHHHHHHHHHhCCCcceEecCChhhcc
Confidence 567999999 4888887553 3332 2111 013899999964 567766677665432 2234567778999999
Q ss_pred CCCcEEEEecCCCCCCCCChhHHHh--------------------hhHHHHHHHHHHHHhhcCCCcEEEEEeCChhhHHH
Q 019990 80 KDVNIAVMVGGFPRKEGMERKDVMS--------------------KNVSIYKAQASALEKHAAPNCKVLVVANPANTNAL 139 (332)
Q Consensus 80 ~~aDiVi~~ag~~~~~~~~~~~~~~--------------------~N~~~~~~i~~~i~~~~~~~~~viv~snp~~~~~~ 139 (332)
++||+||+++|.+++++++|++++. +|+++++++++.++++| |+++++++|||++.+|+
T Consensus 76 ~~AD~Vvitag~~~~~g~~rd~~i~~~~Gi~~~~t~g~gg~~~~~r~i~ii~~i~~~i~~~~-P~A~li~~TNPvdv~t~ 154 (167)
T d1u8xx1 76 TDVDFVMAHIRVGKYAMRALDEQIPLKYGVVGQETCGPGGIAYGMRSIGGVLEILDYMEKYS-PDAWMLNYSNPAAIVAE 154 (167)
T ss_dssp SSCSEEEECCCTTHHHHHHHHHHHHHTTTCCCCSSSHHHHHHHHHHHHHHHHHHHHHHHHHC-TTCEEEECCSCHHHHHH
T ss_pred CCCCEEEECCCcCCCCceeHHHhhchhcCceeeccccCcchheehhhHHHHHHHHHHHHhhC-CCeEEEEeCCHHHHHHH
Confidence 9999999999999888888877654 46899999999999998 99999999999999999
Q ss_pred HHHHHCCCCCCCcEE
Q 019990 140 ILKEFAPSIPAKNIT 154 (332)
Q Consensus 140 ~~~~~~~~~~~~~i~ 154 (332)
+++++ +|+.|+.
T Consensus 155 ~~~k~---~P~~rVI 166 (167)
T d1u8xx1 155 ATRRL---RPNSKIL 166 (167)
T ss_dssp HHHHH---STTCCEE
T ss_pred HHHHH---CCccccc
Confidence 99997 4777753
|
| >d1up7a1 c.2.1.5 (A:1-162) 6-phospho-beta-glucosidase {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: 6-phospho-beta-glucosidase species: Thermotoga maritima [TaxId: 2336]
Probab=99.77 E-value=1.8e-19 Score=147.35 Aligned_cols=142 Identities=13% Similarity=0.132 Sum_probs=102.6
Q ss_pred cEEEEEcCCChhHHHHHHHHHhcccCCCCCCeEEEEEecccchhhhhhhHhhhhhhccCCccceEEeCCHHHHhCCCcEE
Q 019990 6 LRVLVTGAAGQIGYALVPMIARGIMLGPDQPVILHMLDIEPAAEALNGVKMELIDAAFPLLKGVVATTDVVEACKDVNIA 85 (332)
Q Consensus 6 ~kI~VtGaaG~IGs~l~~~L~~~~~~~~~~~~~i~l~D~~~~~~~~~~~~~dl~~~~~~~~~~v~~~~~~~~a~~~aDiV 85 (332)
|||+|+| +|.+|.+++...+....... ...|++|+|+++ +++. ...|+.+..+.....+..+++.+++++|||+|
T Consensus 1 mKIaiIG-aGs~g~~~~~~~l~~~~~~~-~~~el~L~Did~--~k~~-~~~d~~~~~~~~~~~~~~t~~~~~~l~~aDvV 75 (162)
T d1up7a1 1 MRIAVIG-GGSSYTPELVKGLLDISEDV-RIDEVIFYDIDE--EKQK-IVVDFVKRLVKDRFKVLISDTFEGAVVDAKYV 75 (162)
T ss_dssp CEEEEET-TTCTTHHHHHHHHHHHTTTS-CCCEEEEECSCH--HHHH-HHHHHHHHHHTTSSEEEECSSHHHHHTTCSEE
T ss_pred CEEEEEC-CCHHHHHHHHHHHHhccccc-CccEEEEEecCc--HHHH-HHHHHHHhhhccCceEEEecCcccccCCCCEE
Confidence 6899999 59899888865433221100 013999999964 3444 45666665443445566678889999999999
Q ss_pred EEecCCCCCCCCChhHHHhhh--------------------HHHHHHHHHHHHhhcCCCcEEEEEeCChhhHHHHHHHHC
Q 019990 86 VMVGGFPRKEGMERKDVMSKN--------------------VSIYKAQASALEKHAAPNCKVLVVANPANTNALILKEFA 145 (332)
Q Consensus 86 i~~ag~~~~~~~~~~~~~~~N--------------------~~~~~~i~~~i~~~~~~~~~viv~snp~~~~~~~~~~~~ 145 (332)
|+++|.+++++.+|++.+..| ++.+..+.+ +.+++ |+++++++|||++.++++++++
T Consensus 76 Vita~~~~~~~~~r~~~i~~~~~i~~~~~~g~~g~~~~~r~~~~~~~i~~-~~~~~-p~a~~i~vtNPvdiit~~~~~~- 152 (162)
T d1up7a1 76 IFQFRPGGLKGRENDEGIPLKYGLIGQETTGVGGFSAALRAFPIVEEYVD-TVRKT-SNATIVNFTNPSGHITEFVRNY- 152 (162)
T ss_dssp EECCCTTHHHHHHHHHHGGGGGTCCCCSSSTHHHHHHHHHHHHHHHHHHH-HHHHT-TCCEEEECSSSHHHHHHHHHHT-
T ss_pred EEecccCCCCCcchHhhhhhhcCeeeeeccCcchhhhhhhhhHHHHHHhh-hhccC-CCeEEEEeCCHHHHHHHHHHHh-
Confidence 999999887777776655544 444555544 66777 8999999999999999999996
Q ss_pred CCCCCCcEEEee
Q 019990 146 PSIPAKNITCLT 157 (332)
Q Consensus 146 ~~~~~~~i~~~t 157 (332)
+|++|++|.|
T Consensus 153 --~p~~rviGlC 162 (162)
T d1up7a1 153 --LEYEKFIGLC 162 (162)
T ss_dssp --TCCSSEEECC
T ss_pred --CCCCCEEeeC
Confidence 3667888865
|
| >d1obba1 c.2.1.5 (A:2-172) Alpha-glucosidase AglA {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Alpha-glucosidase AglA species: Thermotoga maritima [TaxId: 2336]
Probab=99.76 E-value=6e-18 Score=139.27 Aligned_cols=136 Identities=15% Similarity=0.182 Sum_probs=103.5
Q ss_pred CCcEEEEEcCCChhHHHHH--HHHHh-cccCCCCCCeEEEEEecccchhhhhhhHhhhhhhcc--CCccceEEeCCHHHH
Q 019990 4 NPLRVLVTGAAGQIGYALV--PMIAR-GIMLGPDQPVILHMLDIEPAAEALNGVKMELIDAAF--PLLKGVVATTDVVEA 78 (332)
Q Consensus 4 ~~~kI~VtGaaG~IGs~l~--~~L~~-~~~~~~~~~~~i~l~D~~~~~~~~~~~~~dl~~~~~--~~~~~v~~~~~~~~a 78 (332)
+.|||+|+| +|.+|++++ ..|+. ..+.+ .||+|+|+++ +++++...|+.+... .....+..++|.+++
T Consensus 1 p~mKI~iIG-aGsvg~t~~~~~~l~~~~~l~~----~eivL~Did~--~~~~~~~~~~~~~~~~~~~~~~i~~~td~~ea 73 (171)
T d1obba1 1 PSVKIGIIG-AGSAVFSLRLVSDLCKTPGLSG----STVTLMDIDE--ERLDAILTIAKKYVEEVGADLKFEKTMNLDDV 73 (171)
T ss_dssp CCCEEEEET-TTCHHHHHHHHHHHHTCGGGTT----CEEEEECSCH--HHHHHHHHHHHHHHHHTTCCCEEEEESCHHHH
T ss_pred CCcEEEEEC-CCHHHhHHHHHHHHHhccccCC----CEEEEEeCCc--hHHHHHHHHHHHHHHhcCCCeEEEEeCChhhc
Confidence 368999999 599998754 33443 23211 3999999964 577888888877532 233567778899999
Q ss_pred hCCCcEEEEecCC------------------CCCCCCChhHH--------HhhhHHHHHHHHHHHHhhcCCCcEEEEEeC
Q 019990 79 CKDVNIAVMVGGF------------------PRKEGMERKDV--------MSKNVSIYKAQASALEKHAAPNCKVLVVAN 132 (332)
Q Consensus 79 ~~~aDiVi~~ag~------------------~~~~~~~~~~~--------~~~N~~~~~~i~~~i~~~~~~~~~viv~sn 132 (332)
+++||+||++++. ++.++++|.+. ..+|+++++++++.+++++ |+++++++||
T Consensus 74 L~dad~Vv~~~~~g~~~~~~~~~~i~~~~g~~~~~~~~~~~~~g~~~~~~~~rn~~i~~~i~~~i~~~~-p~a~~i~~TN 152 (171)
T d1obba1 74 IIDADFVINTAMVGGHTYLEKVRQIGEKYGYYRGIDAQEFNMVSDYYTFSNYNQLKYFVDIARKIEKLS-PKAWYLQAAN 152 (171)
T ss_dssp HTTCSEEEECCCTTHHHHHHHHHHHHHHTTCTTCTTCBTTBCCTTCCSSSCHHHHHHHHHHHHHHHHHC-TTCEEEECSS
T ss_pred ccCCCeEeeecccccccceeeehhcchhhhhccCCCccccCCCCCcceeeecchHHHHHHHHHHHHHHC-cCeEEEEECC
Confidence 9999999998754 33344444433 3469999999999999998 9999999999
Q ss_pred ChhhHHHHHHHHCCCC
Q 019990 133 PANTNALILKEFAPSI 148 (332)
Q Consensus 133 p~~~~~~~~~~~~~~~ 148 (332)
|++.+++.++++ +++
T Consensus 153 Pvdv~t~~~~k~-~~~ 167 (171)
T d1obba1 153 PIFEGTTLVTRT-VPI 167 (171)
T ss_dssp CHHHHHHHHHHH-SCS
T ss_pred hHHHHHHHHHHh-cCC
Confidence 999999999997 443
|
| >d2b69a1 c.2.1.2 (A:4-315) UDP-glucuronate decarboxylase 1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: UDP-glucuronate decarboxylase 1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.59 E-value=2.9e-16 Score=141.45 Aligned_cols=169 Identities=11% Similarity=-0.011 Sum_probs=114.7
Q ss_pred CcEEEEEcCCChhHHHHHHHHHhcccCCCCCCeEEEEEecccchhhhhhhHhhhhhhccCCccceEEeCCHHHHhCCCcE
Q 019990 5 PLRVLVTGAAGQIGYALVPMIARGIMLGPDQPVILHMLDIEPAAEALNGVKMELIDAAFPLLKGVVATTDVVEACKDVNI 84 (332)
Q Consensus 5 ~~kI~VtGaaG~IGs~l~~~L~~~~~~~~~~~~~i~l~D~~~~~~~~~~~~~dl~~~~~~~~~~v~~~~~~~~a~~~aDi 84 (332)
++||+||||+||||++++..|++.++ +|+.+|+.... .. ..+.........++.....+..++.++|+
T Consensus 1 kKKIlVtG~sGfiG~~lv~~L~~~g~-------~V~~~d~~~~~-~~----~~~~~~~~~~~~d~~~~~~~~~~~~~~d~ 68 (312)
T d2b69a1 1 RKRILITGGAGFVGSHLTDKLMMDGH-------EVTVVDNFFTG-RK----RNVEHWIGHENFELINHDVVEPLYIEVDQ 68 (312)
T ss_dssp CCEEEEETTTSHHHHHHHHHHHHTTC-------EEEEEECCSSC-CG----GGTGGGTTCTTEEEEECCTTSCCCCCCSE
T ss_pred CCEEEEECCCcHHHHHHHHHHHHCcC-------EEEEEeCCCcC-CH----HHHHHhcCCCceEEEehHHHHHHHcCCCE
Confidence 47999999999999999999999886 88888863211 11 11111111111234434444556679999
Q ss_pred EEEecCCCCCC--CCChhHHHhhhHHHHHHHHHHHHhhcCCCcEEEEEeCChhhHHH----HHHH----HCCCCCCCcEE
Q 019990 85 AVMVGGFPRKE--GMERKDVMSKNVSIYKAQASALEKHAAPNCKVLVVANPANTNAL----ILKE----FAPSIPAKNIT 154 (332)
Q Consensus 85 Vi~~ag~~~~~--~~~~~~~~~~N~~~~~~i~~~i~~~~~~~~~viv~snp~~~~~~----~~~~----~~~~~~~~~i~ 154 (332)
|||+|+....+ .....+.++.|+.++.++++++++.+ .++|++|+.. +... ...+ ..+.+.|..+|
T Consensus 69 VihlAa~~~~~~~~~~~~~~~~~Nv~g~~~ll~~~~~~~---~k~I~~SS~~-vy~~~~~~~~~e~~~~~~~~~~p~~~Y 144 (312)
T d2b69a1 69 IYHLASPASPPNYMYNPIKTLKTNTIGTLNMLGLAKRVG---ARLLLASTSE-VYGDPEVHPQSEDYWGHVNPIGPRACY 144 (312)
T ss_dssp EEECCSCCSHHHHTTCHHHHHHHHHHHHHHHHHHHHHHT---CEEEEEEEGG-GGBSCSSSSBCTTCCCBCCSSSTTHHH
T ss_pred EEECcccCCchhHHhCHHHHHHHHHHHHHHHHHHHHHcC---CcEEEEEChh-eecCCCCCCCCccccCCCCCCCCccHH
Confidence 99999864311 12345577899999999999999874 3666666421 1000 0000 00123455679
Q ss_pred EeecccHHHHHHHHHHHcCCCCCCeeeeEEEecCC
Q 019990 155 CLTRLDHNRAMGQISERLKVHVSDVKNVIIWGNHS 189 (332)
Q Consensus 155 ~~t~l~~~r~~~~~a~~~~v~~~~v~~~~V~G~hg 189 (332)
+.++...+.+...+++.+|++...+|.++|||++.
T Consensus 145 ~~sK~~~E~~~~~~~~~~~~~~~~lR~~~vyGp~~ 179 (312)
T d2b69a1 145 DEGKRVAETMCYAYMKQEGVEVRVARIFNTFGPRM 179 (312)
T ss_dssp HHHHHHHHHHHHHHHHHHCCCEEEEEECCEECTTC
T ss_pred HHHHHHHHHHHHHHHHHhCCcEEEEEeeeEECCCC
Confidence 99999999999999999999999999999999764
|
| >d2c5aa1 c.2.1.2 (A:13-375) GDP-mannose-3', 5'-epimerase {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: GDP-mannose-3', 5'-epimerase species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=99.55 E-value=1.6e-15 Score=139.08 Aligned_cols=172 Identities=10% Similarity=0.085 Sum_probs=116.8
Q ss_pred CCcEEEEEcCCChhHHHHHHHHHhcccCCCCCCeEEEEEecccchhhhhhhHhhhhhhccCCccceEEeCCHHHHhCCCc
Q 019990 4 NPLRVLVTGAAGQIGYALVPMIARGIMLGPDQPVILHMLDIEPAAEALNGVKMELIDAAFPLLKGVVATTDVVEACKDVN 83 (332)
Q Consensus 4 ~~~kI~VtGaaG~IGs~l~~~L~~~~~~~~~~~~~i~l~D~~~~~~~~~~~~~dl~~~~~~~~~~v~~~~~~~~a~~~aD 83 (332)
++|||+||||+||||++|+..|++.++ +|+.+|+..... .. .+.....+ ...++....++.++++++|
T Consensus 14 ~nMKILVTGgsGfIGs~lv~~L~~~g~-------~V~~~d~~~~~~-~~---~~~~~~~~-~~~D~~~~~~~~~~~~~~d 81 (363)
T d2c5aa1 14 ENLKISITGAGGFIASHIARRLKHEGH-------YVIASDWKKNEH-MT---EDMFCDEF-HLVDLRVMENCLKVTEGVD 81 (363)
T ss_dssp SCCEEEEETTTSHHHHHHHHHHHHTTC-------EEEEEESSCCSS-SC---GGGTCSEE-EECCTTSHHHHHHHHTTCS
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHCcC-------EEEEEeCCCccc-hh---hhcccCcE-EEeechhHHHHHHHhhcCC
Confidence 678899999999999999999999886 899998754221 11 11111100 1123333345566688999
Q ss_pred EEEEecCCCCCC---CCChhHHHhhhHHHHHHHHHHHHhhcCCCcEEEEEeCChhhHHH----------HHHHHCCCCCC
Q 019990 84 IAVMVGGFPRKE---GMERKDVMSKNVSIYKAQASALEKHAAPNCKVLVVANPANTNAL----------ILKEFAPSIPA 150 (332)
Q Consensus 84 iVi~~ag~~~~~---~~~~~~~~~~N~~~~~~i~~~i~~~~~~~~~viv~snp~~~~~~----------~~~~~~~~~~~ 150 (332)
.|||+|+..... ..........|+.++.++++++.+.+ . -++|..|+....-.. ...+. +...|
T Consensus 82 ~Vih~a~~~~~~~~~~~~~~~~~~~n~~gt~~ll~~~~~~~-v-k~~i~~SS~~~~~~~~~~~~~~~~~~~~e~-~~~~p 158 (363)
T d2c5aa1 82 HVFNLAADMGGMGFIQSNHSVIMYNNTMISFNMIEAARING-I-KRFFYASSACIYPEFKQLETTNVSLKESDA-WPAEP 158 (363)
T ss_dssp EEEECCCCCCCHHHHTTCHHHHHHHHHHHHHHHHHHHHHTT-C-SEEEEEEEGGGSCGGGSSSSSSCEECGGGG-SSBCC
T ss_pred eEeecccccccccccccccccccccccchhhHHHHhHHhhC-c-cccccccccccccccccccccccccccccC-CcCCC
Confidence 999998764321 22334567789999999999999875 2 256666642211000 00010 22345
Q ss_pred CcEEEeecccHHHHHHHHHHHcCCCCCCeeeeEEEecCCC
Q 019990 151 KNITCLTRLDHNRAMGQISERLKVHVSDVKNVIIWGNHSS 190 (332)
Q Consensus 151 ~~i~~~t~l~~~r~~~~~a~~~~v~~~~v~~~~V~G~hg~ 190 (332)
..+|+.+++..+++...+++.+|++...+|.++|||+++.
T Consensus 159 ~~~Yg~sK~~~E~~~~~~~~~~gl~~~ilR~~~vyG~~~~ 198 (363)
T d2c5aa1 159 QDAFGLEKLATEELCKHYNKDFGIECRIGRFHNIYGPFGT 198 (363)
T ss_dssp SSHHHHHHHHHHHHHHHHHHHHCCEEEEEEECCEECTTSC
T ss_pred CCHHHHHHHHHHHHHHHHHHHhCCCEEEEEeeeEeccCCc
Confidence 5679999999999999999999999999999999998764
|
| >d1kewa_ c.2.1.2 (A:) dTDP-glucose 4,6-dehydratase (RmlB) {Streptococcus suis, serotype 2 [TaxId: 1307]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: dTDP-glucose 4,6-dehydratase (RmlB) species: Streptococcus suis, serotype 2 [TaxId: 1307]
Probab=99.51 E-value=5.8e-16 Score=142.39 Aligned_cols=190 Identities=13% Similarity=0.127 Sum_probs=121.3
Q ss_pred cEEEEEcCCChhHHHHHHHHHhcccCCCCCCeEEEEEecccchhhhhhhHhhhhhhc----cC-CccceEEeCCHHHHhC
Q 019990 6 LRVLVTGAAGQIGYALVPMIARGIMLGPDQPVILHMLDIEPAAEALNGVKMELIDAA----FP-LLKGVVATTDVVEACK 80 (332)
Q Consensus 6 ~kI~VtGaaG~IGs~l~~~L~~~~~~~~~~~~~i~l~D~~~~~~~~~~~~~dl~~~~----~~-~~~~v~~~~~~~~a~~ 80 (332)
|||+||||+||||++|+..|++.++ ..+.++|...... ....+.+.. .. ...|++....+.++++
T Consensus 1 MkILItG~tGfIGs~l~~~L~~~g~------~vv~~~d~~~~~~----~~~~~~~~~~~~~~~~~~~Dl~d~~~l~~~~~ 70 (361)
T d1kewa_ 1 MKILITGGAGFIGSAVVRHIIKNTQ------DTVVNIDKLTYAG----NLESLSDISESNRYNFEHADICDSAEITRIFE 70 (361)
T ss_dssp CEEEEESTTSHHHHHHHHHHHHHCS------CEEEEEECCCTTC----CGGGGTTTTTCTTEEEEECCTTCHHHHHHHHH
T ss_pred CEEEEECCCcHHHHHHHHHHHHCCC------CEEEEEeCCCccc----cHHHHHhhhhcCCcEEEEccCCCHHHHHHHHH
Confidence 5899999999999999999998875 1467788643111 111122210 00 1134433334445554
Q ss_pred --CCcEEEEecCCCCCCC--CChhHHHhhhHHHHHHHHHHHHhhcCC-------CcEEEEEeCChhhHH-----H-----
Q 019990 81 --DVNIAVMVGGFPRKEG--MERKDVMSKNVSIYKAQASALEKHAAP-------NCKVLVVANPANTNA-----L----- 139 (332)
Q Consensus 81 --~aDiVi~~ag~~~~~~--~~~~~~~~~N~~~~~~i~~~i~~~~~~-------~~~viv~snp~~~~~-----~----- 139 (332)
++|+|||+|+....+. .+....++.|+.++.++++.+.++... ..+++.+|+.. +.. +
T Consensus 71 ~~~~d~VihlAa~~~~~~~~~~p~~~~~~N~~gt~nl~~~~~~~~~~~~~~~~~~~~~i~~SS~~-vyg~~~~~~~~~~~ 149 (361)
T d1kewa_ 71 QYQPDAVMHLAAESHVDRSITGPAAFIETNIVGTYALLEVARKYWSALGEDKKNNFRFHHISTDE-VYGDLPHPDEVENS 149 (361)
T ss_dssp HHCCSEEEECCSCCCHHHHHHCTHHHHHHHTHHHHHHHHHHHHHHHTSCHHHHHHCEEEEEEEGG-GGCCCCCGGGSCTT
T ss_pred hCCCCEEEECccccchhhHHhCHHHHHHHHHHHHHHHHHHHHHhhhhhhhcccCceEEEEeccce-eeCCCccCCccccc
Confidence 5899999998643110 122456788999999999999876411 12566666421 100 0
Q ss_pred ----HHHHHCCCCCCCcEEEeecccHHHHHHHHHHHcCCCCCCeeeeEEEecCC--CceeecccCcccccCCCCcchh
Q 019990 140 ----ILKEFAPSIPAKNITCLTRLDHNRAMGQISERLKVHVSDVKNVIIWGNHS--STQYPDVNHATVTTSKGEKPVR 211 (332)
Q Consensus 140 ----~~~~~~~~~~~~~i~~~t~l~~~r~~~~~a~~~~v~~~~v~~~~V~G~hg--~~~v~~~s~~~v~~~~~~~p~~ 211 (332)
...+ .....|..+||.+++..+++...+++.++++...+|.++|||+++ ++.+|.+-+... .|+|+.
T Consensus 150 ~~~~~~~e-~~~~~p~s~Yg~sK~~~E~~~~~~~~~~~i~~~~lR~~~vyGp~~~~~~~i~~~i~~~~----~g~~~~ 222 (361)
T d1kewa_ 150 VTLPLFTE-TTAYAPSSPYSASKASSDHLVRAWRRTYGLPTIVTNCSNNYGPYHFPEKLIPLVILNAL----EGKPLP 222 (361)
T ss_dssp SCCCCBCT-TSCCCCCSHHHHHHHHHHHHHHHHHHHHCCCEEEEEECEEESTTCCTTSHHHHHHHHHH----HTCCEE
T ss_pred cCCCCccc-CCCCCCCCHHHHHHHHHHHHHHHHHHHhCCCEEEEecCceECcCCCcCcHHHHHHHHHH----cCCCcE
Confidence 0000 012334557999999999999999999999999999999999876 456777655555 455554
|
| >d1db3a_ c.2.1.2 (A:) GDP-mannose 4,6-dehydratase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: GDP-mannose 4,6-dehydratase species: Escherichia coli [TaxId: 562]
Probab=99.51 E-value=4.2e-15 Score=136.23 Aligned_cols=175 Identities=10% Similarity=0.047 Sum_probs=114.8
Q ss_pred cEEEEEcCCChhHHHHHHHHHhcccCCCCCCeEEEEEecccch---hhhhhhHhhhh--hhcc-CCccceEEeCCHHHHh
Q 019990 6 LRVLVTGAAGQIGYALVPMIARGIMLGPDQPVILHMLDIEPAA---EALNGVKMELI--DAAF-PLLKGVVATTDVVEAC 79 (332)
Q Consensus 6 ~kI~VtGaaG~IGs~l~~~L~~~~~~~~~~~~~i~l~D~~~~~---~~~~~~~~dl~--~~~~-~~~~~v~~~~~~~~a~ 79 (332)
++|+||||+||||++|+..|++.|+ +|+.+|+..+. +++.....+.. ...+ ....|++...++.+.+
T Consensus 2 K~vLITGatGfiGs~lv~~Ll~~g~-------~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~ 74 (357)
T d1db3a_ 2 KVALITGVTGQDGSYLAEFLLEKGY-------EVHGIKRRASSFNTERVDHIYQDPHTCNPKFHLHYGDLSDTSNLTRIL 74 (357)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTC-------EEEEECC---------------------CCEEECCCCSSCHHHHHHHH
T ss_pred CEEEEeCCCcHHHHHHHHHHHHCcC-------EEEEEECCCcccchhhHHHHHhhhhhcCCCeEEEEeecCCHHHHHHHH
Confidence 5678999999999999999999886 89999975321 11111000000 0001 1124555555566677
Q ss_pred CCC--cEEEEecCCCCCC--CCChhHHHhhhHHHHHHHHHHHHhhcCCC-cEEEEEeCChhhH----HHHHHHHCCCCCC
Q 019990 80 KDV--NIAVMVGGFPRKE--GMERKDVMSKNVSIYKAQASALEKHAAPN-CKVLVVANPANTN----ALILKEFAPSIPA 150 (332)
Q Consensus 80 ~~a--DiVi~~ag~~~~~--~~~~~~~~~~N~~~~~~i~~~i~~~~~~~-~~viv~snp~~~~----~~~~~~~~~~~~~ 150 (332)
+++ |+|+|+|+..... ..+....++.|+.++.++++++++++..+ .++|.+|+.. +- ...+.| ...+.|
T Consensus 75 ~~~~~d~v~h~aa~~~~~~~~~~~~~~~~~Nv~gt~nllea~~~~~~~~~~r~i~~SS~~-vYG~~~~~~~~E-~~~~~P 152 (357)
T d1db3a_ 75 REVQPDEVYNLGAMSHVAVSFESPEYTADVDAMGTLRLLEAIRFLGLEKKTRFYQASTSE-LYGLVQEIPQKE-TTPFYP 152 (357)
T ss_dssp HHHCCSEEEECCCCCTTTTTTSCHHHHHHHHTHHHHHHHHHHHHTTCTTTCEEEEEEEGG-GGTTCCSSSBCT-TSCCCC
T ss_pred hccCCCEEEEeecccccchhhhCHHHHHHHHHHHHHHHHHHHHHhCCCCCcEEEEEEchh-hhCCCCCCCcCC-CCCCCC
Confidence 654 9999999874322 23345577889999999999999875322 4667666431 10 000111 123456
Q ss_pred CcEEEeecccHHHHHHHHHHHcCCCCCCeeeeEEEecCC
Q 019990 151 KNITCLTRLDHNRAMGQISERLKVHVSDVKNVIIWGNHS 189 (332)
Q Consensus 151 ~~i~~~t~l~~~r~~~~~a~~~~v~~~~v~~~~V~G~hg 189 (332)
..+|+.+|+..+++...+++.++++...+|.++|||+..
T Consensus 153 ~~~Y~~sK~~~E~~~~~~~~~~~l~~~ilR~~~vyGp~~ 191 (357)
T d1db3a_ 153 RSPYAVAKLYAYWITVNYRESYGMYACNGILFNHESPRR 191 (357)
T ss_dssp CSHHHHHHHHHHHHHHHHHHHHCCCEEEEEECCEECTTS
T ss_pred CChHHHHHHHHHHHHHHHHHHhCCCEEEEEeccccCCCC
Confidence 668999999999999999999999999999999999854
|
| >d1udca_ c.2.1.2 (A:) Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) species: Escherichia coli [TaxId: 562]
Probab=99.49 E-value=7.6e-15 Score=133.35 Aligned_cols=172 Identities=13% Similarity=0.094 Sum_probs=111.2
Q ss_pred cEEEEEcCCChhHHHHHHHHHhcccCCCCCCeEEEEEecccchhhhhhhHhhhhhh---ccC-CccceEEeCCHHHHhC-
Q 019990 6 LRVLVTGAAGQIGYALVPMIARGIMLGPDQPVILHMLDIEPAAEALNGVKMELIDA---AFP-LLKGVVATTDVVEACK- 80 (332)
Q Consensus 6 ~kI~VtGaaG~IGs~l~~~L~~~~~~~~~~~~~i~l~D~~~~~~~~~~~~~dl~~~---~~~-~~~~v~~~~~~~~a~~- 80 (332)
|||+||||+||||++|+..|++.++ +|+.+|+..... ......+.+. .+. ...|+.....+.++++
T Consensus 1 MKiLItG~tGfIG~~l~~~L~~~g~-------~V~~~d~~~~~~--~~~~~~~~~~~~~~~~~~~~Dl~d~~~l~~~~~~ 71 (338)
T d1udca_ 1 MRVLVTGGSGYIGSHTCVQLLQNGH-------DVIILDNLCNSK--RSVLPVIERLGGKHPTFVEGDIRNEALMTEILHD 71 (338)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTC-------EEEEEECCSSCC--TTHHHHHHHHHTSCCEEEECCTTCHHHHHHHHHH
T ss_pred CEEEEECCCCHHHHHHHHHHHHCcC-------EEEEEECCCCcc--hhhHHHHHhhcCCCCEEEEeecCCHHHHHHHHhc
Confidence 6899999999999999999999886 899998632110 1111111111 111 1245554455666776
Q ss_pred -CCcEEEEecCCCCCCC--CChhHHHhhhHHHHHHHHHHHHhhcCCCcEEEEEeCChhhHHH----HHHHHCCCCCCCcE
Q 019990 81 -DVNIAVMVGGFPRKEG--MERKDVMSKNVSIYKAQASALEKHAAPNCKVLVVANPANTNAL----ILKEFAPSIPAKNI 153 (332)
Q Consensus 81 -~aDiVi~~ag~~~~~~--~~~~~~~~~N~~~~~~i~~~i~~~~~~~~~viv~snp~~~~~~----~~~~~~~~~~~~~i 153 (332)
++|+|||+|+....+. ....+.++.|+.++++++++++++. .. ++|..|... +... ...+..+...|...
T Consensus 72 ~~~d~ViHlAa~~~~~~~~~~~~~~~~~Nv~gt~nlL~~~~~~~-v~-~~i~~Ss~~-vy~~~~~~~~~e~~~~~~p~~~ 148 (338)
T d1udca_ 72 HAIDTVIHFAGLKAVGESVQKPLEYYDNNVNGTLRLISAMRAAN-VK-NFIFSSSAT-VYGDQPKIPYVESFPTGTPQSP 148 (338)
T ss_dssp TTCSEEEECCSCCCHHHHHHCHHHHHHHHHHHHHHHHHHHHHHT-CC-EEEEEEEGG-GGCSCCSSSBCTTSCCCCCSSH
T ss_pred cCCCEEEECCCccchhhHHhCHHHHHHhHHHHHHHHHHHHHHhC-CC-EEEecCcce-EEccccccccccccccCCCcch
Confidence 7899999998642110 1234678899999999999999985 33 455555322 1100 00011122345567
Q ss_pred EEeecccHHHHHHHHHHH-cCCCCCCeeeeEEEecCC
Q 019990 154 TCLTRLDHNRAMGQISER-LKVHVSDVKNVIIWGNHS 189 (332)
Q Consensus 154 ~~~t~l~~~r~~~~~a~~-~~v~~~~v~~~~V~G~hg 189 (332)
|+.+++..+++....++. .+.+...+|.++|||++.
T Consensus 149 Y~~sK~~~e~~~~~~~~~~~~~~~~ilR~~~v~G~~~ 185 (338)
T d1udca_ 149 YGKSKLMVEQILTDLQKAQPDWSIALLRYFNPVGAHP 185 (338)
T ss_dssp HHHHHHHHHHHHHHHHHHSTTCEEEEEEECEEECCCT
T ss_pred HHHHHhhhhHHHHHHHhhccCCeEEEEeeccEEeccC
Confidence 899999999887655554 578888899999999864
|
| >d1oc2a_ c.2.1.2 (A:) dTDP-glucose 4,6-dehydratase (RmlB) {Streptococcus suis, serotype 2 [TaxId: 1307]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: dTDP-glucose 4,6-dehydratase (RmlB) species: Streptococcus suis, serotype 2 [TaxId: 1307]
Probab=99.48 E-value=5.7e-15 Score=134.60 Aligned_cols=176 Identities=12% Similarity=0.043 Sum_probs=113.6
Q ss_pred CCcEEEEEcCCChhHHHHHHHHHhcccCCCCCCeEEEEEecccchhhhhhhHhhhhhhccC-CccceEEeCCHHHHhCCC
Q 019990 4 NPLRVLVTGAAGQIGYALVPMIARGIMLGPDQPVILHMLDIEPAAEALNGVKMELIDAAFP-LLKGVVATTDVVEACKDV 82 (332)
Q Consensus 4 ~~~kI~VtGaaG~IGs~l~~~L~~~~~~~~~~~~~i~l~D~~~~~~~~~~~~~dl~~~~~~-~~~~v~~~~~~~~a~~~a 82 (332)
+||||+||||+||||++|+..|++.+.- ..++.+|...... .......+...... ...|+.....+.++++++
T Consensus 1 ~~mkILVTGgtGfIGs~lv~~L~~~g~~-----v~v~~~d~~~~~~-~~~~~~~~~~~~i~~~~~Di~d~~~~~~~~~~~ 74 (346)
T d1oc2a_ 1 QFKNIIVTGGAGFIGSNFVHYVYNNHPD-----VHVTVLDKLTYAG-NKANLEAILGDRVELVVGDIADAELVDKLAAKA 74 (346)
T ss_dssp CCSEEEEETTTSHHHHHHHHHHHHHCTT-----CEEEEEECCCTTC-CGGGTGGGCSSSEEEEECCTTCHHHHHHHHTTC
T ss_pred CcCEEEEeCCCcHHHHHHHHHHHHCCCC-----eEEEEEeCCCccc-cHHHHHHhhcCCeEEEEccCCCHHHHHHHHhhh
Confidence 5899999999999999999999988751 2566666422100 00000011110111 123444445567778999
Q ss_pred cEEEEecCCCCCCC--CChhHHHhhhHHHHHHHHHHHHhhcCCCcEEEEEeCChhh-------HHHH--------HHHHC
Q 019990 83 NIAVMVGGFPRKEG--MERKDVMSKNVSIYKAQASALEKHAAPNCKVLVVANPANT-------NALI--------LKEFA 145 (332)
Q Consensus 83 DiVi~~ag~~~~~~--~~~~~~~~~N~~~~~~i~~~i~~~~~~~~~viv~snp~~~-------~~~~--------~~~~~ 145 (332)
|.|+|+|+...... .+..+.+..|+.++.++++++...+ . +++++++..-. ..+. ..+ .
T Consensus 75 ~~v~~~a~~~~~~~~~~~~~~~~~~N~~g~~nll~~~~~~~-~--k~i~~ss~~vyg~~~~~~~~~~~~~~~~~~~~e-~ 150 (346)
T d1oc2a_ 75 DAIVHYAAESHNDNSLNDPSPFIHTNFIGTYTLLEAARKYD-I--RFHHVSTDEVYGDLPLREDLPGHGEGPGEKFTA-E 150 (346)
T ss_dssp SEEEECCSCCCHHHHHHCCHHHHHHHTHHHHHHHHHHHHHT-C--EEEEEEEGGGGCCBCCGGGSTTTTCSTTSSBCT-T
T ss_pred hhhhhhhhcccccchhhCcccceeeehHhHHhhhhhhcccc-c--cccccccceEecccCccccccccccCccccccc-C
Confidence 99999987643211 1224567889999999999999885 2 44444422100 0000 000 0
Q ss_pred CCCCCCcEEEeecccHHHHHHHHHHHcCCCCCCeeeeEEEecCC
Q 019990 146 PSIPAKNITCLTRLDHNRAMGQISERLKVHVSDVKNVIIWGNHS 189 (332)
Q Consensus 146 ~~~~~~~i~~~t~l~~~r~~~~~a~~~~v~~~~v~~~~V~G~hg 189 (332)
+.+.|...||.+++..+++...+++..+++...+|.++|||++.
T Consensus 151 ~~~~p~s~Y~~sK~~~E~~~~~~~~~~~i~~~ilR~~~vyGp~~ 194 (346)
T d1oc2a_ 151 TNYNPSSPYSSTKAASDLIVKAWVRSFGVKATISNCSNNYGPYQ 194 (346)
T ss_dssp SCCCCCSHHHHHHHHHHHHHHHHHHHHCCEEEEEEECCEESTTC
T ss_pred CCCCCCCHHHHHHHHHHHHHHHHHHHcCCCEEEEeecceeCCCC
Confidence 12334457899999999999999999999999999999999754
|
| >d1r6da_ c.2.1.2 (A:) dTDP-glucose 4,6-dehydratase (RmlB) {Streptomyces venezuelae [TaxId: 54571]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: dTDP-glucose 4,6-dehydratase (RmlB) species: Streptomyces venezuelae [TaxId: 54571]
Probab=99.46 E-value=2.9e-14 Score=128.47 Aligned_cols=194 Identities=13% Similarity=0.086 Sum_probs=124.1
Q ss_pred cEEEEEcCCChhHHHHHHHHHhcccCCCCCCeEEEEEecccchhhhhhhHhhhhhh----ccC-CccceEEeCCHHHHhC
Q 019990 6 LRVLVTGAAGQIGYALVPMIARGIMLGPDQPVILHMLDIEPAAEALNGVKMELIDA----AFP-LLKGVVATTDVVEACK 80 (332)
Q Consensus 6 ~kI~VtGaaG~IGs~l~~~L~~~~~~~~~~~~~i~l~D~~~~~~~~~~~~~dl~~~----~~~-~~~~v~~~~~~~~a~~ 80 (332)
|||+||||+||||++++..|++.++-- ....+++.+|..... +....+... .+. ...+............
T Consensus 1 MkIlItG~tGfIG~~l~~~L~~~g~~v-~~~~~i~~~d~~~~~----~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~ 75 (322)
T d1r6da_ 1 MRLLVTGGAGFIGSHFVRQLLAGAYPD-VPADEVIVLDSLTYA----GNRANLAPVDADPRLRFVHGDIRDAGLLARELR 75 (322)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTSCTT-SCCSEEEEEECCCTT----CCGGGGGGGTTCTTEEEEECCTTCHHHHHHHTT
T ss_pred CEEEEECCCCHHHHHHHHHHHHCCCCc-cCCceEEEEeCCCcc----ccHhHhhhhhcCCCeEEEEeccccchhhhcccc
Confidence 589999999999999999999876511 112367888864311 111111111 000 1122222223445578
Q ss_pred CCcEEEEecCCCCCC--CCChhHHHhhhHHHHHHHHHHHHhhcCCCcEEEEEeCChhhH---HHHHHHHCCCCCCCcEEE
Q 019990 81 DVNIAVMVGGFPRKE--GMERKDVMSKNVSIYKAQASALEKHAAPNCKVLVVANPANTN---ALILKEFAPSIPAKNITC 155 (332)
Q Consensus 81 ~aDiVi~~ag~~~~~--~~~~~~~~~~N~~~~~~i~~~i~~~~~~~~~viv~snp~~~~---~~~~~~~~~~~~~~~i~~ 155 (332)
+.|+|+|+|+.+... .....+.++.|+.++.++++++.++. . .++|.+|+..-.- .....+. +.+.|...|+
T Consensus 76 ~~d~vi~~a~~~~~~~~~~~~~~~~~~N~~gt~~ll~~~~~~~-~-~~~I~~Ss~~~yg~~~~~~~~E~-~~~~p~~~Y~ 152 (322)
T d1r6da_ 76 GVDAIVHFAAESHVDRSIAGASVFTETNVQGTQTLLQCAVDAG-V-GRVVHVSTNQVYGSIDSGSWTES-SPLEPNSPYA 152 (322)
T ss_dssp TCCEEEECCSCCCHHHHHHCCHHHHHHHTHHHHHHHHHHHHTT-C-CEEEEEEEGGGGCCCSSSCBCTT-SCCCCCSHHH
T ss_pred ccceEEeecccccccccccchHHHhhhhHHHHHHHHHHHHHcC-C-ceEEEeecceeecCCCCCCCCCC-CCCCCCCHHH
Confidence 999999999765321 11234567889999999999999885 3 3566666432100 0001111 3345666789
Q ss_pred eecccHHHHHHHHHHHcCCCCCCeeeeEEEecCC--CceeecccCcccccCCCCcchh
Q 019990 156 LTRLDHNRAMGQISERLKVHVSDVKNVIIWGNHS--STQYPDVNHATVTTSKGEKPVR 211 (332)
Q Consensus 156 ~t~l~~~r~~~~~a~~~~v~~~~v~~~~V~G~hg--~~~v~~~s~~~v~~~~~~~p~~ 211 (332)
.++...+.+...+++.++++...+|.++|||++. +..+|.|-+... .|+|+.
T Consensus 153 ~sK~~~E~~~~~~~~~~~~~~~~lR~~~vyGp~~~~~~~i~~~i~~~~----~~~~i~ 206 (322)
T d1r6da_ 153 ASKAGSDLVARAYHRTYGLDVRITRCCNNYGPYQHPEKLIPLFVTNLL----DGGTLP 206 (322)
T ss_dssp HHHHHHHHHHHHHHHHHCCCEEEEEECEEECTTCCTTSHHHHHHHHHH----TTCCEE
T ss_pred HHHHHHHHHHHHHHHHhCCCEEEEEeeeEECcCCCcCcHHHHHHHHHH----cCCCcE
Confidence 9999999999999999999999999999999754 456776655445 555554
|
| >d1i24a_ c.2.1.2 (A:) Sulfolipid biosynthesis protein SQD1 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Sulfolipid biosynthesis protein SQD1 species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=99.41 E-value=9.1e-14 Score=128.59 Aligned_cols=176 Identities=13% Similarity=0.171 Sum_probs=110.6
Q ss_pred cEEEEEcCCChhHHHHHHHHHhcccCCCCCCeEEEEEecccchhh--------------hhhhHh---hhhhhccC-Ccc
Q 019990 6 LRVLVTGAAGQIGYALVPMIARGIMLGPDQPVILHMLDIEPAAEA--------------LNGVKM---ELIDAAFP-LLK 67 (332)
Q Consensus 6 ~kI~VtGaaG~IGs~l~~~L~~~~~~~~~~~~~i~l~D~~~~~~~--------------~~~~~~---dl~~~~~~-~~~ 67 (332)
|||+||||+||||++|+..|++.|+ +|+.+|....... ...... .+.+..+. ...
T Consensus 2 ~kILVTGatGfiG~~lv~~Ll~~g~-------~V~~iDnl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 74 (393)
T d1i24a_ 2 SRVMVIGGDGYCGWATALHLSKKNY-------EVCIVDNLVRRLFDHQLGLESLTPIASIHDRISRWKALTGKSIELYVG 74 (393)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTC-------EEEEEECCHHHHHHHHHTCCCSSCCCCHHHHHHHHHHHHCCCCEEEES
T ss_pred CEEEEECCCcHHHHHHHHHHHHCcC-------EEEEEecCCcccccccccccccccccchHHHHHHHHhhcCCCcEEEEc
Confidence 7999999999999999999999886 8999984210000 000000 00000011 113
Q ss_pred ceEEeCCHHHHhC--CCcEEEEecCCCCCC--CCC---hhHHHhhhHHHHHHHHHHHHhhcCCCcEEEEEeCChhhHHHH
Q 019990 68 GVVATTDVVEACK--DVNIAVMVGGFPRKE--GME---RKDVMSKNVSIYKAQASALEKHAAPNCKVLVVANPANTNALI 140 (332)
Q Consensus 68 ~v~~~~~~~~a~~--~aDiVi~~ag~~~~~--~~~---~~~~~~~N~~~~~~i~~~i~~~~~~~~~viv~snp~~~~~~~ 140 (332)
|++....+.++++ +.|+|+|+|+....+ ..+ ...++..|+.++.++++++++++ ...+++..|........-
T Consensus 75 Dl~d~~~l~~~~~~~~~d~ViHlAa~~~~~~s~~~~~~~~~~~~~Nv~gt~nll~~~~~~~-~~~~~i~~ss~~~~~~~~ 153 (393)
T d1i24a_ 75 DICDFEFLAESFKSFEPDSVVHFGEQRSAPYSMIDRSRAVYTQHNNVIGTLNVLFAIKEFG-EECHLVKLGTMGEYGTPN 153 (393)
T ss_dssp CTTSHHHHHHHHHHHCCSEEEECCSCCCHHHHTSCHHHHHHHHHHHHHHHHHHHHHHHHHC-TTCEEEEECCGGGGCCCS
T ss_pred cCCCHHHHHHHHHhhcchheeccccccccccccccccccccccccccccccHHHHHHHHhc-cccceeeccccccccccc
Confidence 4443344556665 459999999864311 111 22457889999999999999986 444555555322110000
Q ss_pred H--HH-------------HCCCCCCCcEEEeecccHHHHHHHHHHHcCCCCCCeeeeEEEecCC
Q 019990 141 L--KE-------------FAPSIPAKNITCLTRLDHNRAMGQISERLKVHVSDVKNVIIWGNHS 189 (332)
Q Consensus 141 ~--~~-------------~~~~~~~~~i~~~t~l~~~r~~~~~a~~~~v~~~~v~~~~V~G~hg 189 (332)
. .+ ......|..+|+.+++..+.+...+++..+++...+|..+|||+..
T Consensus 154 ~~~~~~~~~~~~~~~~~~~~~~~~p~~~Y~~sK~~aE~~~~~~~~~~~l~~~~lR~~~v~G~~~ 217 (393)
T d1i24a_ 154 IDIEEGYITITHNGRTDTLPYPKQASSFYHLSKVHDSHNIAFTCKAWGIRATDLNQGVVYGVKT 217 (393)
T ss_dssp SCBCSSEEEEEETTEEEEEECCCCCCSHHHHHHHHHHHHHHHHHHHHCCEEEEEEECEEECSCC
T ss_pred cccccccccccccccccccccccccccHHHHHhhhhcccccccccccceeeeecccccccCCCc
Confidence 0 00 0001234446899999999999999999999999999999999753
|
| >d1t2aa_ c.2.1.2 (A:) GDP-mannose 4,6-dehydratase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: GDP-mannose 4,6-dehydratase species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.34 E-value=1.2e-13 Score=125.21 Aligned_cols=174 Identities=12% Similarity=-0.003 Sum_probs=111.8
Q ss_pred cEE-EEEcCCChhHHHHHHHHHhcccCCCCCCeEEEEEecccchhhhhhhHhhhh-hhccC-------CccceEEeCCHH
Q 019990 6 LRV-LVTGAAGQIGYALVPMIARGIMLGPDQPVILHMLDIEPAAEALNGVKMELI-DAAFP-------LLKGVVATTDVV 76 (332)
Q Consensus 6 ~kI-~VtGaaG~IGs~l~~~L~~~~~~~~~~~~~i~l~D~~~~~~~~~~~~~dl~-~~~~~-------~~~~v~~~~~~~ 76 (332)
+|| +||||+||||++|+..|++.|+ +|+.+|+....... +....+. +.... ...|++....+.
T Consensus 1 kKI~LVTG~tGfIG~~l~~~Ll~~g~-------~V~~i~r~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~ 72 (347)
T d1t2aa_ 1 RNVALITGITGQDGSYLAEFLLEKGY-------EVHGIVRRSSSFNT-GRIEHLYKNPQAHIEGNMKLHYGDLTDSTCLV 72 (347)
T ss_dssp CCEEEEETTTSHHHHHHHHHHHHTTC-------EEEEEECCCSSCCC-TTTGGGC---------CEEEEECCTTCHHHHH
T ss_pred CCEEEEecCCcHHHHHHHHHHHHCcC-------EEEEEECCCcccch-hhHHHHhhchhhhccCCcEEEEeecCCchhhH
Confidence 589 8999999999999999999886 89999985421001 0001110 00000 012333223344
Q ss_pred HHhC--CCcEEEEecCCCCCC--CCChhHHHhhhHHHHHHHHHHHHhhcCCC-cEEEEEeCChhhH----HHHHHHHCCC
Q 019990 77 EACK--DVNIAVMVGGFPRKE--GMERKDVMSKNVSIYKAQASALEKHAAPN-CKVLVVANPANTN----ALILKEFAPS 147 (332)
Q Consensus 77 ~a~~--~aDiVi~~ag~~~~~--~~~~~~~~~~N~~~~~~i~~~i~~~~~~~-~~viv~snp~~~~----~~~~~~~~~~ 147 (332)
+++. +.++|+|+++..... .....+..+.|+.++.++++++++++..+ .++|.+|+.. +- ...+.| .+.
T Consensus 73 ~~~~~~~~~~v~~~~a~~~~~~~~~~~~~~~~~Nv~gt~~ll~~~~~~~~~~~~~~i~~SS~~-vyg~~~~~~~~E-~~~ 150 (347)
T d1t2aa_ 73 KIINEVKPTEIYNLGAQSHVKISFDLAEYTADVDGVGTLRLLDAVKTCGLINSVKFYQASTSE-LYGKVQEIPQKE-TTP 150 (347)
T ss_dssp HHHHHHCCSEEEECCSCCCHHHHHHSHHHHHHHHTHHHHHHHHHHHHTTCTTTCEEEEEEEGG-GTCSCSSSSBCT-TSC
T ss_pred HHHhhcccceeeeeeeccccchhhccchhhhhhHHHHHHHHHHHHHHcCCCCCcEEEEecchh-eecCCCCCCCCC-CCC
Confidence 4443 567889888754321 12334556889999999999999876333 3566666421 10 000112 133
Q ss_pred CCCCcEEEeecccHHHHHHHHHHHcCCCCCCeeeeEEEecCC
Q 019990 148 IPAKNITCLTRLDHNRAMGQISERLKVHVSDVKNVIIWGNHS 189 (332)
Q Consensus 148 ~~~~~i~~~t~l~~~r~~~~~a~~~~v~~~~v~~~~V~G~hg 189 (332)
+.|..+|+.+|+..+++...+++.++++...+|.++|||+..
T Consensus 151 ~~P~~~Yg~sK~~aE~~~~~~~~~~~~~~~ilr~~~vyGp~~ 192 (347)
T d1t2aa_ 151 FYPRSPYGAAKLYAYWIVVNFREAYNLFAVNGILFNHESPRR 192 (347)
T ss_dssp CCCCSHHHHHHHHHHHHHHHHHHHHCCEEEEEEECCEECTTS
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHhCCCEEEEEecceeCCCC
Confidence 556668999999999999999999999999999999999753
|
| >d2blla1 c.2.1.2 (A:316-657) Polymyxin resistance protein ArnA (PrmI) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Polymyxin resistance protein ArnA (PrmI) species: Escherichia coli [TaxId: 562]
Probab=99.33 E-value=4.4e-13 Score=121.40 Aligned_cols=170 Identities=14% Similarity=0.126 Sum_probs=109.8
Q ss_pred cEEEEEcCCChhHHHHHHHHHhcccCCCCCCeEEEEEecccchhhhhhhHhhhhhhccC-CccceEEeCCHHH-HhCCCc
Q 019990 6 LRVLVTGAAGQIGYALVPMIARGIMLGPDQPVILHMLDIEPAAEALNGVKMELIDAAFP-LLKGVVATTDVVE-ACKDVN 83 (332)
Q Consensus 6 ~kI~VtGaaG~IGs~l~~~L~~~~~~~~~~~~~i~l~D~~~~~~~~~~~~~dl~~~~~~-~~~~v~~~~~~~~-a~~~aD 83 (332)
|||+||||+||||++++..|++.+. .+|+.+|+... ... ...+ +..+. ...|++...++.+ +.+++|
T Consensus 1 MKILITG~tGfiG~~l~~~Ll~~g~------~~V~~ld~~~~--~~~-~~~~--~~~~~~i~~Di~~~~~~~~~~~~~~d 69 (342)
T d2blla1 1 MRVLILGVNGFIGNHLTERLLREDH------YEVYGLDIGSD--AIS-RFLN--HPHFHFVEGDISIHSEWIEYHVKKCD 69 (342)
T ss_dssp CEEEEETCSSHHHHHHHHHHHHSTT------CEEEEEESCCG--GGG-GGTT--CTTEEEEECCTTTCSHHHHHHHHHCS
T ss_pred CEEEEECCCcHHHHHHHHHHHHCCC------CEEEEEeCCCc--chh-hhcc--CCCeEEEECccCChHHHHHHHHhCCC
Confidence 5899999999999999999988774 27999987532 111 0011 11111 1234443334433 567899
Q ss_pred EEEEecCCCCCCC--CChhHHHhhhHHHHHHHHHHHHhhcCCCcEEEEEeCChhhHHH---HHHHH------CCCCCCCc
Q 019990 84 IAVMVGGFPRKEG--MERKDVMSKNVSIYKAQASALEKHAAPNCKVLVVANPANTNAL---ILKEF------APSIPAKN 152 (332)
Q Consensus 84 iVi~~ag~~~~~~--~~~~~~~~~N~~~~~~i~~~i~~~~~~~~~viv~snp~~~~~~---~~~~~------~~~~~~~~ 152 (332)
+|||+|+...... ......+..|+.++.++++++.+.. .+.++.+.....-.. ...+. .+...|+.
T Consensus 70 ~Vih~a~~~~~~~~~~~~~~~~~~nv~gt~~ll~~~~~~~---~~~~~~ss~~~~~~~~~~~~~~~~~~~~~~~~~~p~~ 146 (342)
T d2blla1 70 VVLPLVAIATPIEYTRNPLRVFELDFEENLRIIRYCVKYR---KRIIFPSTSEVYGMCSDKYFDEDHSNLIVGPVNKPRW 146 (342)
T ss_dssp EEEECBCCCCHHHHHHSHHHHHHHHTHHHHHHHHHHHHTT---CEEEEECCGGGGBTCCCSSBCTTTCCCBCCCTTCGGG
T ss_pred ccccccccccccccccCCcccccccccccccccccccccc---ccccccccccccccccccccccccccccccccCCCcc
Confidence 9999998753221 1223467889999999999999874 344555532210000 00000 00112334
Q ss_pred EEEeecccHHHHHHHHHHHcCCCCCCeeeeEEEecCC
Q 019990 153 ITCLTRLDHNRAMGQISERLKVHVSDVKNVIIWGNHS 189 (332)
Q Consensus 153 i~~~t~l~~~r~~~~~a~~~~v~~~~v~~~~V~G~hg 189 (332)
.|+.+|...+++...+++.+|++...+|...++|...
T Consensus 147 ~Y~~sK~~~E~~~~~~~~~~~~~~~i~r~~~~~g~~~ 183 (342)
T d2blla1 147 IYSVSKQLLDRVIWAYGEKEGLQFTLFRPFNWMGPRL 183 (342)
T ss_dssp HHHHHHHHHHHHHHHHHHHHCCCEEEEEECSEECSSC
T ss_pred hhhhcccchhhhhhhhhcccCceeEEeeccccccccc
Confidence 6888999999999999999999999999999999754
|
| >d1gy8a_ c.2.1.2 (A:) Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) {Trypanosoma brucei [TaxId: 5691]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) species: Trypanosoma brucei [TaxId: 5691]
Probab=99.32 E-value=9.2e-13 Score=121.33 Aligned_cols=175 Identities=17% Similarity=0.140 Sum_probs=108.7
Q ss_pred cEEEEEcCCChhHHHHHHHHHh-cccCCCCCCeEEEEEecccch-------hhhhhhHhhhhhhcc--C--C-------c
Q 019990 6 LRVLVTGAAGQIGYALVPMIAR-GIMLGPDQPVILHMLDIEPAA-------EALNGVKMELIDAAF--P--L-------L 66 (332)
Q Consensus 6 ~kI~VtGaaG~IGs~l~~~L~~-~~~~~~~~~~~i~l~D~~~~~-------~~~~~~~~dl~~~~~--~--~-------~ 66 (332)
|||+||||+||||++|+..|++ .++ +|+.+|.-... +........+..... . . .
T Consensus 3 MKVLITG~tGfIGs~lv~~LL~~~~~-------~V~~~D~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 75 (383)
T d1gy8a_ 3 MRVLVCGGAGYIGSHFVRALLRDTNH-------SVVIVDSLVGTHGKSDHVETRENVARKLQQSDGPKPPWADRYAALEV 75 (383)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHHCCC-------EEEEEECCTTTTTCCTTSCCHHHHHHHHHHSCSSCCTTTTCCCEEEE
T ss_pred CEEEEeCCCcHHHHHHHHHHHHhCCC-------EEEEEecCCcccccchhhhhhhhHHHHhhhhccccccccccceEEEE
Confidence 5999999999999999999986 554 89999841100 001111111111110 0 0 1
Q ss_pred cceEEeCCHHHHh---CCCcEEEEecCCCCCCC--CChhHHHhhhHHHHHHHHHHHHhhcCCCcEEEEEeCChhh----H
Q 019990 67 KGVVATTDVVEAC---KDVNIAVMVGGFPRKEG--MERKDVMSKNVSIYKAQASALEKHAAPNCKVLVVANPANT----N 137 (332)
Q Consensus 67 ~~v~~~~~~~~a~---~~aDiVi~~ag~~~~~~--~~~~~~~~~N~~~~~~i~~~i~~~~~~~~~viv~snp~~~----~ 137 (332)
.|+.....+.+++ +++|+|+|+|+...... .........|+.++.++++++++.+ .. ++++.+..... .
T Consensus 76 ~Di~d~~~l~~~~~~~~~~d~ViH~Aa~~~~~~~~~~~~~~~~~N~~~t~~~l~~~~~~~-~~-~~~~~~s~~~~~~~~~ 153 (383)
T d1gy8a_ 76 GDVRNEDFLNGVFTRHGPIDAVVHMCAFLAVGESVRDPLKYYDNNVVGILRLLQAMLLHK-CD-KIIFSSSAAIFGNPTM 153 (383)
T ss_dssp SCTTCHHHHHHHHHHSCCCCEEEECCCCCCHHHHHHCHHHHHHHHHHHHHHHHHHHHHTT-CC-EEEEEEEGGGTBSCCC
T ss_pred CcccCHHHhhhhhhccceeehhhcccccccccccccccccccccccccccccchhhhccC-Cc-cccccccccccccccc
Confidence 2333333344444 47899999998643211 1223456789999999999999986 33 33444322110 0
Q ss_pred HHHHHHH-----CCCCCCCcEEEeecccHHHHHHHHHHHcCCCCCCeeeeEEEecCC
Q 019990 138 ALILKEF-----APSIPAKNITCLTRLDHNRAMGQISERLKVHVSDVKNVIIWGNHS 189 (332)
Q Consensus 138 ~~~~~~~-----~~~~~~~~i~~~t~l~~~r~~~~~a~~~~v~~~~v~~~~V~G~hg 189 (332)
-....+. .....|..+|+.+++..+++...+++.+|++...+|.++|||+..
T Consensus 154 ~~~~~~~~~~~e~~~~~p~~~Y~~sK~~~e~~~~~~~~~~gl~~~~lR~~~vyG~~~ 210 (383)
T d1gy8a_ 154 GSVSTNAEPIDINAKKSPESPYGESKLIAERMIRDCAEAYGIKGICLRYFNACGAHE 210 (383)
T ss_dssp -----CCCCBCTTSCCBCSSHHHHHHHHHHHHHHHHHHHHCCEEEEEEECEEECCCT
T ss_pred ccccccccccccccCCCCCCHHHhhHhHHHHHHHHHHHHhCCCEEEEecceeeccCc
Confidence 0100100 012345567899999999999999999999999999999999754
|
| >d1orra_ c.2.1.2 (A:) CDP-tyvelose-2-epimerase {Salmonella typhi [TaxId: 90370]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: CDP-tyvelose-2-epimerase species: Salmonella typhi [TaxId: 90370]
Probab=99.31 E-value=3e-13 Score=121.68 Aligned_cols=173 Identities=12% Similarity=0.103 Sum_probs=108.5
Q ss_pred EEEEEcCCChhHHHHHHHHHhcccCCCCCCeEEEEEecccchhhhhhhHhhhhh-hccC-CccceEEeCCHHHHhCC--C
Q 019990 7 RVLVTGAAGQIGYALVPMIARGIMLGPDQPVILHMLDIEPAAEALNGVKMELID-AAFP-LLKGVVATTDVVEACKD--V 82 (332)
Q Consensus 7 kI~VtGaaG~IGs~l~~~L~~~~~~~~~~~~~i~l~D~~~~~~~~~~~~~dl~~-~~~~-~~~~v~~~~~~~~a~~~--a 82 (332)
||+||||+||||++|+..|++.|+ +|+.+|......... ....+.. .... ...|+....++.+++++ .
T Consensus 2 KILVTGatGfIGs~lv~~Ll~~g~-------~V~~id~~~~~~~~~-~~~~~~~~~~~~~i~~Di~~~~~l~~~~~~~~~ 73 (338)
T d1orra_ 2 KLLITGGCGFLGSNLASFALSQGI-------DLIVFDNLSRKGATD-NLHWLSSLGNFEFVHGDIRNKNDVTRLITKYMP 73 (338)
T ss_dssp EEEEETTTSHHHHHHHHHHHHTTC-------EEEEEECCCSTTHHH-HHHHHHTTCCCEEEECCTTCHHHHHHHHHHHCC
T ss_pred EEEEECCCcHHHHHHHHHHHHCcC-------EEEEEECCCcccchh-HHHHhhccCCcEEEEcccCCHHHHHHHHHhcCC
Confidence 899999999999999999999886 898898532111111 1111111 1111 12455444556667765 4
Q ss_pred cEEEEecCCCCCCC--CChhHHHhhhHHHHHHHHHHHHhhcCCCcEEEEEeCChhhHHHH-------------------H
Q 019990 83 NIAVMVGGFPRKEG--MERKDVMSKNVSIYKAQASALEKHAAPNCKVLVVANPANTNALI-------------------L 141 (332)
Q Consensus 83 DiVi~~ag~~~~~~--~~~~~~~~~N~~~~~~i~~~i~~~~~~~~~viv~snp~~~~~~~-------------------~ 141 (332)
|+|||+|+...... .+.....+.|+.++.++++++.+.. ..-++++.|. ....... .
T Consensus 74 d~Vih~aa~~~~~~~~~~~~~~~~~Nv~gt~nll~~~~~~~-~~~~i~~sS~-~~~~~~~~~~~~~~~~~~~~~~~~~~~ 151 (338)
T d1orra_ 74 DSCFHLAGQVAMTTSIDNPCMDFEINVGGTLNLLEAVRQYN-SNCNIIYSST-NKVYGDLEQYKYNETETRYTCVDKPNG 151 (338)
T ss_dssp SEEEECCCCCCHHHHHHCHHHHHHHHHHHHHHHHHHHHHHC-TTCEEEEEEE-GGGGTTCTTSCEEECSSCEEETTCTTC
T ss_pred ceEEeecccccccccccChHHHHHHHHHHHHHHHHhhhccc-cccccccccc-ccccccccccccccccccccccccccC
Confidence 99999998643211 1234577889999999999999985 3334444442 1110000 0
Q ss_pred HHHCCCCCCCcEEEeecccHHHHHHHHHHHcCCCCCCeeeeEEEecCC
Q 019990 142 KEFAPSIPAKNITCLTRLDHNRAMGQISERLKVHVSDVKNVIIWGNHS 189 (332)
Q Consensus 142 ~~~~~~~~~~~i~~~t~l~~~r~~~~~a~~~~v~~~~v~~~~V~G~hg 189 (332)
....+.+.+...++.++...+.+....++.++.....++.++++|+++
T Consensus 152 ~~~~~~~~~~~~y~~~k~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~ 199 (338)
T d1orra_ 152 YDESTQLDFHSPYGCSKGAADQYMLDYARIFGLNTVVFRHSSMYGGRQ 199 (338)
T ss_dssp BCTTSCCCCCHHHHHHHHHHHHHHHHHHHHHCCEEEEEEECCEECTTC
T ss_pred cccCCccccccccccccchhhhhhhhhhhccCcccccccccceeeccc
Confidence 000011233445677788888888888999999999999888888654
|
| >d1sb8a_ c.2.1.2 (A:) UDP-N-acetylglucosamine 4-epimerase WbpP {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: UDP-N-acetylglucosamine 4-epimerase WbpP species: Pseudomonas aeruginosa [TaxId: 287]
Probab=99.31 E-value=1.4e-12 Score=118.17 Aligned_cols=174 Identities=15% Similarity=0.126 Sum_probs=113.0
Q ss_pred CCcEEEEEcCCChhHHHHHHHHHhcccCCCCCCeEEEEEecccch--hhhhhhHhhhh-h---hccCC-ccceEEeCCHH
Q 019990 4 NPLRVLVTGAAGQIGYALVPMIARGIMLGPDQPVILHMLDIEPAA--EALNGVKMELI-D---AAFPL-LKGVVATTDVV 76 (332)
Q Consensus 4 ~~~kI~VtGaaG~IGs~l~~~L~~~~~~~~~~~~~i~l~D~~~~~--~~~~~~~~dl~-~---~~~~~-~~~v~~~~~~~ 76 (332)
++++|+||||+||||++|+..|.+.|+ +|..+|+.... ...... ..+. . ..... ..+........
T Consensus 15 ~~k~iLVTG~tGfIGs~lv~~L~~~g~-------~V~~~d~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~d~~d~~~~~ 86 (341)
T d1sb8a_ 15 QPKVWLITGVAGFIGSNLLETLLKLDQ-------KVVGLDNFATGHQRNLDEV-RSLVSEKQWSNFKFIQGDIRNLDDCN 86 (341)
T ss_dssp SCCEEEEETTTSHHHHHHHHHHHHTTC-------EEEEEECCSSCCHHHHHHH-HHHSCHHHHTTEEEEECCTTSHHHHH
T ss_pred CCCEEEEecCCCHHHHHHHHHHHHCcC-------EEEEEECCCCcchhhHHHH-HHhhhhcccCCeeEEeeccccccccc
Confidence 578999999999999999999999886 89999863211 111110 0110 0 00000 11222222334
Q ss_pred HHhCCCcEEEEecCCCCCC--CCChhHHHhhhHHHHHHHHHHHHhhcCCCcEEEEEeCChhhH----HHHHHHHCCCCCC
Q 019990 77 EACKDVNIAVMVGGFPRKE--GMERKDVMSKNVSIYKAQASALEKHAAPNCKVLVVANPANTN----ALILKEFAPSIPA 150 (332)
Q Consensus 77 ~a~~~aDiVi~~ag~~~~~--~~~~~~~~~~N~~~~~~i~~~i~~~~~~~~~viv~snp~~~~----~~~~~~~~~~~~~ 150 (332)
....+.+.|+|++.....+ ..+....+..|+.++.++++++.+++ .. ++|..|+..-.- .+ ..+ .+...|
T Consensus 87 ~~~~~~~~v~~~~a~~~~~~~~~~~~~~~~~Nv~gt~~ll~~~~~~~-~~-~~i~~SS~~vyg~~~~~~-~~E-~~~~~p 162 (341)
T d1sb8a_ 87 NACAGVDYVLHQAALGSVPRSINDPITSNATNIDGFLNMLIAARDAK-VQ-SFTYAASSSTYGDHPGLP-KVE-DTIGKP 162 (341)
T ss_dssp HHHTTCSEEEECCSCCCHHHHHHCHHHHHHHHTHHHHHHHHHHHHTT-CS-EEEEEEEGGGGTTCCCSS-BCT-TCCCCC
T ss_pred cccccccccccccccccccccccCccchhheeehhHHHHHHHHHhcC-Cc-eEEEcccceeeCCCCCCC-ccC-CCCCCC
Confidence 4567889999998654311 12234567889999999999999875 33 556665422100 00 011 123445
Q ss_pred CcEEEeecccHHHHHHHHHHHcCCCCCCeeeeEEEecCC
Q 019990 151 KNITCLTRLDHNRAMGQISERLKVHVSDVKNVIIWGNHS 189 (332)
Q Consensus 151 ~~i~~~t~l~~~r~~~~~a~~~~v~~~~v~~~~V~G~hg 189 (332)
...|+.+++..+++...+++..+++...+|..+|||+++
T Consensus 163 ~~~Y~~sK~~~E~~~~~~~~~~~i~~~ilR~~~v~G~~~ 201 (341)
T d1sb8a_ 163 LSPYAVTKYVNELYADVFSRCYGFSTIGLRYFNVFGRRQ 201 (341)
T ss_dssp CSHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCEECTTC
T ss_pred CCcchHHHHHHHHHHHHHHHHhCCCeEEEEeceeeccCc
Confidence 568999999999999999999999999999988999864
|
| >d1e6ua_ c.2.1.2 (A:) GDP-4-keto-6-deoxy-d-mannose epimerase/reductase (GDP-fucose synthetase) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: GDP-4-keto-6-deoxy-d-mannose epimerase/reductase (GDP-fucose synthetase) species: Escherichia coli [TaxId: 562]
Probab=99.31 E-value=8.1e-13 Score=118.17 Aligned_cols=156 Identities=14% Similarity=0.183 Sum_probs=104.2
Q ss_pred CcEEEEEcCCChhHHHHHHHHHhcccCCCCCCeEEEEEecccchhhhhhhHhhhhhhccCCccceEEeCCHHHHh--CCC
Q 019990 5 PLRVLVTGAAGQIGYALVPMIARGIMLGPDQPVILHMLDIEPAAEALNGVKMELIDAAFPLLKGVVATTDVVEAC--KDV 82 (332)
Q Consensus 5 ~~kI~VtGaaG~IGs~l~~~L~~~~~~~~~~~~~i~l~D~~~~~~~~~~~~~dl~~~~~~~~~~v~~~~~~~~a~--~~a 82 (332)
++||+||||+||||++|+..|++.+. .++++|.... .|+.+. ..+.+.+ .+.
T Consensus 2 kkkIlITG~tGfiG~~l~~~L~~~g~-------~vi~~~~~~~--------~~~~~~-----------~~~~~~~~~~~~ 55 (315)
T d1e6ua_ 2 KQRVFIAGHRGMVGSAIRRQLEQRGD-------VELVLRTRDE--------LNLLDS-----------RAVHDFFASERI 55 (315)
T ss_dssp CEEEEEETTTSHHHHHHHHHHTTCTT-------EEEECCCTTT--------CCTTCH-----------HHHHHHHHHHCC
T ss_pred CCEEEEEcCCcHHHHHHHHHHHHCcC-------EEEEecCchh--------ccccCH-----------HHHHHHHhhcCC
Confidence 46999999999999999999998875 5666665321 122111 1122222 357
Q ss_pred cEEEEecCCCCCC---CCChhHHHhhhHHHHHHHHHHHHhhcCCCcEEEEEeCChhhHHH----HHHHH---C-CCCCCC
Q 019990 83 NIAVMVGGFPRKE---GMERKDVMSKNVSIYKAQASALEKHAAPNCKVLVVANPANTNAL----ILKEF---A-PSIPAK 151 (332)
Q Consensus 83 DiVi~~ag~~~~~---~~~~~~~~~~N~~~~~~i~~~i~~~~~~~~~viv~snp~~~~~~----~~~~~---~-~~~~~~ 151 (332)
|+|+|+|+..... ..+..+++..|+.++.++++++++++ -. ++|++|+ ..+... .+.+- . +..+++
T Consensus 56 d~v~~~a~~~~~~~~~~~~~~~~~~~Nv~gt~~ll~~a~~~~-v~-~~i~~SS-~~vyg~~~~~~~~E~~~~~~~~~~~~ 132 (315)
T d1e6ua_ 56 DQVYLAAAKVGGIVANNTYPADFIYQNMMIESNIIHAAHQND-VN-KLLFLGS-SCIYPKLAKQPMAESELLQGTLEPTN 132 (315)
T ss_dssp SEEEECCCCCCCHHHHHHCHHHHHHHHHHHHHHHHHHHHHTT-CC-EEEEECC-GGGSCTTCCSSBCGGGTTSSCCCGGG
T ss_pred CEEEEcchhccccccchhhHHHHHHHHHHHHHHHHHHHHHcC-CC-EEEEECC-ceEcCCCCCCCccCCccccCCCCCCC
Confidence 9999988653211 12334567889999999999999875 22 5666664 221100 00000 0 112223
Q ss_pred cEEEeecccHHHHHHHHHHHcCCCCCCeeeeEEEecCC
Q 019990 152 NITCLTRLDHNRAMGQISERLKVHVSDVKNVIIWGNHS 189 (332)
Q Consensus 152 ~i~~~t~l~~~r~~~~~a~~~~v~~~~v~~~~V~G~hg 189 (332)
..|+.+|+..+++...+++..|++...+|.++|||+++
T Consensus 133 ~~Y~~sK~~~E~~~~~~~~~~gl~~~ilR~~~vyGp~~ 170 (315)
T d1e6ua_ 133 EPYAIAKIAGIKLCESYNRQYGRDYRSVMPTNLYGPHD 170 (315)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHCCEEEEEEECEEESTTC
T ss_pred CHHHHHHHHHHHHHHHHHHHhCCCEEEEeeccEECCCC
Confidence 36899999999999999999999999999999999865
|
| >d1n7ha_ c.2.1.2 (A:) GDP-mannose 4,6-dehydratase {Thale-cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: GDP-mannose 4,6-dehydratase species: Thale-cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=99.28 E-value=2.2e-13 Score=123.02 Aligned_cols=176 Identities=9% Similarity=-0.029 Sum_probs=108.2
Q ss_pred CcEEEEEcCCChhHHHHHHHHHhcccCCCCCCeEEEEEecccch---hhhhhhHhhhhhhc---cC-CccceEEeCCHHH
Q 019990 5 PLRVLVTGAAGQIGYALVPMIARGIMLGPDQPVILHMLDIEPAA---EALNGVKMELIDAA---FP-LLKGVVATTDVVE 77 (332)
Q Consensus 5 ~~kI~VtGaaG~IGs~l~~~L~~~~~~~~~~~~~i~l~D~~~~~---~~~~~~~~dl~~~~---~~-~~~~v~~~~~~~~ 77 (332)
.++++||||+||||+||+..|++.|+ +|+.+|+..+. +++.....+..... .. ...|+.....+.+
T Consensus 1 ~k~~LVTGatGfiG~~lv~~Ll~~g~-------~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Di~~~~~~~~ 73 (339)
T d1n7ha_ 1 RKIALITGITGQDGSYLTEFLLGKGY-------EVHGLIRRSSNFNTQRINHIYIDPHNVNKALMKLHYADLTDASSLRR 73 (339)
T ss_dssp CCEEEEETTTSHHHHHHHHHHHHTTC-------EEEEEECCCSSCCCTTTTTTC--------CCEEEEECCTTCHHHHHH
T ss_pred CCEEEEeCCccHHHHHHHHHHHHCcC-------EEEEEECCCcccchhhhhhhhhhhhhccccceEEEEccccCHHHHHH
Confidence 36899999999999999999999887 89999974321 11111111111100 00 0123332233444
Q ss_pred Hh--CCCcEEEEecCCCCCCC--CChhHHHhhhHHHHHHHHHHHHhhcC---CCcEEEEEeCChhhHH---HHHHHHCCC
Q 019990 78 AC--KDVNIAVMVGGFPRKEG--MERKDVMSKNVSIYKAQASALEKHAA---PNCKVLVVANPANTNA---LILKEFAPS 147 (332)
Q Consensus 78 a~--~~aDiVi~~ag~~~~~~--~~~~~~~~~N~~~~~~i~~~i~~~~~---~~~~viv~snp~~~~~---~~~~~~~~~ 147 (332)
.+ .+.|+|+|+|+...... .........|..++..+.++++.... ...+++..|+ ..... ....+. ..
T Consensus 74 ~~~~~~~D~Vih~Aa~~~~~~~~~~p~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~ss-~~~~~~~~~~~~E~-~~ 151 (339)
T d1n7ha_ 74 WIDVIKPDEVYNLAAQSHVAVSFEIPDYTADVVATGALRLLEAVRSHTIDSGRTVKYYQAGS-SEMFGSTPPPQSET-TP 151 (339)
T ss_dssp HHHHHCCSEEEECCSCCCHHHHHHSHHHHHHHHTHHHHHHHHHHHHHHHHHCCCCEEEEEEE-GGGGTTSCSSBCTT-SC
T ss_pred HHhhhccchhhhccccccccccccCccccccccccccchhhhhhhhcccccccceeeeeccc-ceecccCCCCCCCC-CC
Confidence 44 36799999998743211 12234567788888888888765431 1223343332 21100 001111 23
Q ss_pred CCCCcEEEeecccHHHHHHHHHHHcCCCCCCeeeeEEEecCC
Q 019990 148 IPAKNITCLTRLDHNRAMGQISERLKVHVSDVKNVIIWGNHS 189 (332)
Q Consensus 148 ~~~~~i~~~t~l~~~r~~~~~a~~~~v~~~~v~~~~V~G~hg 189 (332)
+.|...|+.+++..+++...+++.++++...+|.++|||+++
T Consensus 152 ~~p~~~Y~~sK~~~E~~~~~~~~~~~~~~~ilR~~~vyGp~~ 193 (339)
T d1n7ha_ 152 FHPRSPYAASKCAAHWYTVNYREAYGLFACNGILFNHESPRR 193 (339)
T ss_dssp CCCCSHHHHHHHHHHHHHHHHHHHHCCEEEEEEECCEECTTS
T ss_pred CCCcchhhHHHHHHHHHHHHHHHHhCCCEEEEEEccccCCCC
Confidence 456667899999999999999999999999999999999864
|
| >d1rpna_ c.2.1.2 (A:) GDP-mannose 4,6-dehydratase {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: GDP-mannose 4,6-dehydratase species: Pseudomonas aeruginosa [TaxId: 287]
Probab=99.27 E-value=3.6e-12 Score=114.10 Aligned_cols=173 Identities=12% Similarity=-0.019 Sum_probs=109.7
Q ss_pred cEEEEEcCCChhHHHHHHHHHhcccCCCCCCeEEEEEecccchhhhhhhHhhhh-hhccC-CccceEEeCCHHHHhC--C
Q 019990 6 LRVLVTGAAGQIGYALVPMIARGIMLGPDQPVILHMLDIEPAAEALNGVKMELI-DAAFP-LLKGVVATTDVVEACK--D 81 (332)
Q Consensus 6 ~kI~VtGaaG~IGs~l~~~L~~~~~~~~~~~~~i~l~D~~~~~~~~~~~~~dl~-~~~~~-~~~~v~~~~~~~~a~~--~ 81 (332)
+||+||||+||||++|+..|++.|+ +|+.+|+........ ...++. +.... ...|+.....+.+.+. .
T Consensus 1 k~vLItG~tGfiG~~l~~~Ll~~g~-------~V~~~~r~~~~~~~~-~l~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~ 72 (321)
T d1rpna_ 1 RSALVTGITGQDGAYLAKLLLEKGY-------RVHGLVARRSSDTRW-RLRELGIEGDIQYEDGDMADACSVQRAVIKAQ 72 (321)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTC-------EEEEEECCCSSCCCH-HHHHTTCGGGEEEEECCTTCHHHHHHHHHHHC
T ss_pred CEEEEECCCCHHHHHHHHHHHHCcC-------EEEEEECCCCcccHH-HHHHhcccCCcEEEEccccChHHhhhhhcccc
Confidence 5899999999999999999999886 899898754221111 111111 10010 1123332333333332 4
Q ss_pred CcEEEEecCCCCCC--CCChhHHHhhhHHHHHHHHHHHHhhcCCCcEEEEEeCChhhHH----HHHHHHCCCCCCCcEEE
Q 019990 82 VNIAVMVGGFPRKE--GMERKDVMSKNVSIYKAQASALEKHAAPNCKVLVVANPANTNA----LILKEFAPSIPAKNITC 155 (332)
Q Consensus 82 aDiVi~~ag~~~~~--~~~~~~~~~~N~~~~~~i~~~i~~~~~~~~~viv~snp~~~~~----~~~~~~~~~~~~~~i~~ 155 (332)
.++++++|+..... .....+.+..|+.++.+++++++++. ...+++..|. ..... ....+. +.+.|...|+
T Consensus 73 ~~~~~~~a~~~~~~~~~~~~~~~~~~n~~g~~~~l~~~~~~~-~~~~~i~~Ss-~~~~~~~~~~~~~E~-~~~~p~~~Y~ 149 (321)
T d1rpna_ 73 PQEVYNLAAQSFVGASWNQPVTTGVVDGLGVTHLLEAIRQFS-PETRFYQAST-SEMFGLIQAERQDEN-TPFYPRSPYG 149 (321)
T ss_dssp CSEEEECCSCCCHHHHTTSHHHHHHHHTHHHHHHHHHHHHHC-TTSEEEEEEE-GGGGCSCSSSSBCTT-SCCCCCSHHH
T ss_pred ccccccccccccccccccchHHHHhhhhhchHHHHHHHHHhC-CCcccccccc-hhhcCcccCCCCCCC-CCccccChhH
Confidence 67788877653211 12334567889999999999999986 4445555553 11100 000111 2344555789
Q ss_pred eecccHHHHHHHHHHHcCCCCCCeeeeEEEecCC
Q 019990 156 LTRLDHNRAMGQISERLKVHVSDVKNVIIWGNHS 189 (332)
Q Consensus 156 ~t~l~~~r~~~~~a~~~~v~~~~v~~~~V~G~hg 189 (332)
.+++..+++...+++.++++...+|.++|||+.+
T Consensus 150 ~sK~~~E~~~~~~~~~~~~~~~~lr~~~vyGp~~ 183 (321)
T d1rpna_ 150 VAKLYGHWITVNYRESFGLHASSGILFNHESPLR 183 (321)
T ss_dssp HHHHHHHHHHHHHHHHHCCCEEEEEECCEECTTS
T ss_pred HHHHHHHHHHHHHHhhcCCcEEEEEEecccCCCc
Confidence 9999999999999999999999999999999753
|
| >d1z45a2 c.2.1.2 (A:11-357) Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.26 E-value=2.1e-12 Score=117.27 Aligned_cols=172 Identities=13% Similarity=0.079 Sum_probs=108.2
Q ss_pred cEEEEEcCCChhHHHHHHHHHhcccCCCCCCeEEEEEecccchhhhh--hhHhhhhhhccC-CccceEEeCCHHHHhC--
Q 019990 6 LRVLVTGAAGQIGYALVPMIARGIMLGPDQPVILHMLDIEPAAEALN--GVKMELIDAAFP-LLKGVVATTDVVEACK-- 80 (332)
Q Consensus 6 ~kI~VtGaaG~IGs~l~~~L~~~~~~~~~~~~~i~l~D~~~~~~~~~--~~~~dl~~~~~~-~~~~v~~~~~~~~a~~-- 80 (332)
+.|+||||+||||++|+..|++.++ +|+.+|..... ... .....+...... ...|+....++.++++
T Consensus 2 K~ILVTGatGfIG~~lv~~Ll~~g~-------~V~~~d~~~~~-~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~~~ 73 (347)
T d1z45a2 2 KIVLVTGGAGYIGSHTVVELIENGY-------DCVVADNLSNS-TYDSVARLEVLTKHHIPFYEVDLCDRKGLEKVFKEY 73 (347)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTC-------EEEEEECCSSC-CTHHHHHHHHHHTSCCCEEECCTTCHHHHHHHHHHS
T ss_pred CEEEEeCCCcHHHHHHHHHHHHCcC-------eEEEEECCCCc-chhHHHhHHhhcccCCeEEEeecCCHHHHHHHHhcc
Confidence 3599999999999999999999886 89999853211 111 011111111111 1234444444555544
Q ss_pred CCcEEEEecCCCCCC--CCChhHHHhhhHHHHHHHHHHHHhhcCCCcEEEEEeCChhhH--HHH-----HHHHCCCCCCC
Q 019990 81 DVNIAVMVGGFPRKE--GMERKDVMSKNVSIYKAQASALEKHAAPNCKVLVVANPANTN--ALI-----LKEFAPSIPAK 151 (332)
Q Consensus 81 ~aDiVi~~ag~~~~~--~~~~~~~~~~N~~~~~~i~~~i~~~~~~~~~viv~snp~~~~--~~~-----~~~~~~~~~~~ 151 (332)
++|+|||+|+..... ......+...|+.++.++++++++.. .. ++++.|+..-.- ... ..+ .....|.
T Consensus 74 ~~d~VihlAa~~~~~~~~~~~~~~~~~N~~~t~~ll~~~~~~~-i~-~~i~~SS~~vyg~~~~~~~~~~~~e-~~~~~p~ 150 (347)
T d1z45a2 74 KIDSVIHFAGLKAVGESTQIPLRYYHNNILGTVVLLELMQQYN-VS-KFVFSSSATVYGDATRFPNMIPIPE-ECPLGPT 150 (347)
T ss_dssp CCCEEEECCSCCCHHHHHHSHHHHHHHHHHHHHHHHHHHHHHT-CC-EEEEEEEGGGGCCGGGSTTCCSBCT-TSCCCCC
T ss_pred CCCEEEEccccccccccccCcccccccchhhhHHHHHHHHhcc-cc-eEEeecceeeecCcccCCCCCcccc-ccCCCCC
Confidence 789999999865321 12234567789999999999999875 33 566666432110 000 001 1223445
Q ss_pred cEEEeecccHHHHHHHHHHH--cCCCCCCeeeeEEEecC
Q 019990 152 NITCLTRLDHNRAMGQISER--LKVHVSDVKNVIIWGNH 188 (332)
Q Consensus 152 ~i~~~t~l~~~r~~~~~a~~--~~v~~~~v~~~~V~G~h 188 (332)
..|+.+|...+++...+.+. .+++...+|.++|||.+
T Consensus 151 ~~Y~~sK~~~E~~~~~~~~~~~~~~~~~~lR~~~v~g~~ 189 (347)
T d1z45a2 151 NPYGHTKYAIENILNDLYNSDKKSWKFAILRYFNPIGAH 189 (347)
T ss_dssp SHHHHHHHHHHHHHHHHHHHSTTSCEEEEEEECEEECCC
T ss_pred ChhHhHHHHHHHHHHHHHHhhccCCcEEEEeecceEeec
Confidence 57899999999988777654 56777889999999964
|
| >d1ek6a_ c.2.1.2 (A:) Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.23 E-value=2.4e-12 Score=116.69 Aligned_cols=177 Identities=14% Similarity=0.066 Sum_probs=107.0
Q ss_pred cEEEEEcCCChhHHHHHHHHHhcccCCCCCCeEEEEEecccchh----hhhhhHhhhhh---hccC-CccceEEeCCHHH
Q 019990 6 LRVLVTGAAGQIGYALVPMIARGIMLGPDQPVILHMLDIEPAAE----ALNGVKMELID---AAFP-LLKGVVATTDVVE 77 (332)
Q Consensus 6 ~kI~VtGaaG~IGs~l~~~L~~~~~~~~~~~~~i~l~D~~~~~~----~~~~~~~dl~~---~~~~-~~~~v~~~~~~~~ 77 (332)
+||+||||+||||++|+..|++.|+ +|+.+|+..... ........+.. ..+. ...|++....+.+
T Consensus 3 kKILITG~tGfIGs~lv~~Ll~~g~-------~V~~ld~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~l~~ 75 (346)
T d1ek6a_ 3 EKVLVTGGAGYIGSHTVLELLEAGY-------LPVVIDNFHNAFRGGGSLPESLRRVQELTGRSVEFEEMDILDQGALQR 75 (346)
T ss_dssp SEEEEETTTSHHHHHHHHHHHHTTC-------CEEEEECSSSSCBCSSSSBHHHHHHHHHHTCCCEEEECCTTCHHHHHH
T ss_pred CeEEEECCCcHHHHHHHHHHHHCcC-------EEEEEECCCccccccccchHHHHHHHHhcCCCcEEEEeeccccccccc
Confidence 5899999999999999999999886 788888522110 00000111111 1111 1134444444555
Q ss_pred HhCC--CcEEEEecCCCCCC--CCChhHHHhhhHHHHHHHHHHHHhhcCCCcEEEEEeCChhhHHHH--HH-HHCCCCCC
Q 019990 78 ACKD--VNIAVMVGGFPRKE--GMERKDVMSKNVSIYKAQASALEKHAAPNCKVLVVANPANTNALI--LK-EFAPSIPA 150 (332)
Q Consensus 78 a~~~--aDiVi~~ag~~~~~--~~~~~~~~~~N~~~~~~i~~~i~~~~~~~~~viv~snp~~~~~~~--~~-~~~~~~~~ 150 (332)
++.+ .|+|+|+|+.+... .....+.++.|+.++.++++++++++ .. ++++.|.....-..- .. .......+
T Consensus 76 ~~~~~~~~~i~h~Aa~~~~~~~~~~p~~~~~~Nv~gt~~l~~~~~~~~-v~-~~i~~ss~~~~~~~~~~~~~~~~~~~~~ 153 (346)
T d1ek6a_ 76 LFKKYSFMAVIHFAGLKAVGESVQKPLDYYRVNLTGTIQLLEIMKAHG-VK-NLVFSSSATVYGNPQYLPLDEAHPTGGC 153 (346)
T ss_dssp HHHHCCEEEEEECCSCCCHHHHHHCHHHHHHHHHHHHHHHHHHHHHTT-CC-EEEEEEEGGGGCSCSSSSBCTTSCCCCC
T ss_pred cccccccccccccccccCcHhhHhCHHHHHHhhhcccccccchhhhcC-cc-cccccccceeeecccccccccccccccc
Confidence 5654 45788999865311 11234567889999999999999875 33 555555322110000 00 00011223
Q ss_pred CcEEEeecccHHHHHHHHHHH-cCCCCCCeeeeEEEecCCCc
Q 019990 151 KNITCLTRLDHNRAMGQISER-LKVHVSDVKNVIIWGNHSST 191 (332)
Q Consensus 151 ~~i~~~t~l~~~r~~~~~a~~-~~v~~~~v~~~~V~G~hg~~ 191 (332)
..+|+.+++..++....+++. .+.+...+|.+++||.+...
T Consensus 154 ~~~Y~~~k~~~e~~~~~~~~~~~~~~~~~lR~~~v~G~~~~~ 195 (346)
T d1ek6a_ 154 TNPYGKSKFFIEEMIRDLCQADKTWNAVLLRYFNPTGAHASG 195 (346)
T ss_dssp SSHHHHHHHHHHHHHHHHHHHCTTCEEEEEEECEEECCCTTS
T ss_pred CChHHHHHHHHHHHHHHHHHhccCCceEEEeecceeccCCCC
Confidence 346888888888887777776 68888999999999987543
|
| >d1y1pa1 c.2.1.2 (A:2-343) Aldehyde reductase II {Sporobolomyces salmonicolor [TaxId: 5005]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Aldehyde reductase II species: Sporobolomyces salmonicolor [TaxId: 5005]
Probab=99.22 E-value=3.3e-11 Score=109.04 Aligned_cols=171 Identities=12% Similarity=0.102 Sum_probs=105.3
Q ss_pred CcEEEEEcCCChhHHHHHHHHHhcccCCCCCCeEEEEEecccchhhhhhhHhhhhhhcc------CCccceEEeCCHHHH
Q 019990 5 PLRVLVTGAAGQIGYALVPMIARGIMLGPDQPVILHMLDIEPAAEALNGVKMELIDAAF------PLLKGVVATTDVVEA 78 (332)
Q Consensus 5 ~~kI~VtGaaG~IGs~l~~~L~~~~~~~~~~~~~i~l~D~~~~~~~~~~~~~dl~~~~~------~~~~~v~~~~~~~~a 78 (332)
.++|+||||+||||++++..|++.|+ +|+...++.. +.... ..+.+... ....|+.....+.++
T Consensus 11 gk~VlVTG~sGfIGs~l~~~Ll~~G~-------~V~~~vR~~~--~~~~~-~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~ 80 (342)
T d1y1pa1 11 GSLVLVTGANGFVASHVVEQLLEHGY-------KVRGTARSAS--KLANL-QKRWDAKYPGRFETAVVEDMLKQGAYDEV 80 (342)
T ss_dssp TCEEEEETTTSHHHHHHHHHHHHTTC-------EEEEEESSHH--HHHHH-HHHHHHHSTTTEEEEECSCTTSTTTTTTT
T ss_pred cCEEEEECCCCHHHHHHHHHHHHCcC-------EEEEEeCCch--hHHHH-HHhhhccccccccEEEeccccchhhhhhh
Confidence 47999999999999999999999886 7776655321 11111 11111100 112344444556678
Q ss_pred hCCCcEEEEecCCCCCCCCChhHHHhhhHHHHHHHHHHHHhhcCCCcEEEEEeCChhh-------------------HHH
Q 019990 79 CKDVNIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEKHAAPNCKVLVVANPANT-------------------NAL 139 (332)
Q Consensus 79 ~~~aDiVi~~ag~~~~~~~~~~~~~~~N~~~~~~i~~~i~~~~~~~~~viv~snp~~~-------------------~~~ 139 (332)
+.++|.|+|.++.... ..+...+...|+.++.+++++++++.. --+++++|+.... ...
T Consensus 81 ~~~~~~v~~~a~~~~~-~~~~~~~~~~nv~gt~~ll~~~~~~~~-v~~~i~~SS~~~~~~~~~~~~~~~~~e~~~~~~~~ 158 (342)
T d1y1pa1 81 IKGAAGVAHIASVVSF-SNKYDEVVTPAIGGTLNALRAAAATPS-VKRFVLTSSTVSALIPKPNVEGIYLDEKSWNLESI 158 (342)
T ss_dssp TTTCSEEEECCCCCSC-CSCHHHHHHHHHHHHHHHHHHHHTCTT-CCEEEEECCGGGTCCCCTTCCCCEECTTCCCHHHH
T ss_pred cccchhhhhhcccccc-cccccccccchhhhHHHHHHhhhcccc-cccccccccceeeccCCCCCCCccccccccccccc
Confidence 8999999999886532 344556778899999999999998741 2255555542100 011
Q ss_pred HHHHHCCCCCCC---cEEEeecccHHHHHHHHHHHcCCC--CCCeeeeEEEec
Q 019990 140 ILKEFAPSIPAK---NITCLTRLDHNRAMGQISERLKVH--VSDVKNVIIWGN 187 (332)
Q Consensus 140 ~~~~~~~~~~~~---~i~~~t~l~~~r~~~~~a~~~~v~--~~~v~~~~V~G~ 187 (332)
.........++. ..|+.+|...+++...+++..+.. ...+++..|+|+
T Consensus 159 ~~~~~~~e~~~~~p~~~Y~~sK~~~E~~~~~~~~~~~~~~~~~~i~p~~v~Gp 211 (342)
T d1y1pa1 159 DKAKTLPESDPQKSLWVYAASKTEAELAAWKFMDENKPHFTLNAVLPNYTIGT 211 (342)
T ss_dssp HHHHHSCTTSTTHHHHHHHHHHHHHHHHHHHHHHHHCCSSEEEEEEESEEECC
T ss_pred cccccccccCCCCCcCcccchhHhHHHHHHHhhhhcccccccceecccceeCC
Confidence 111110111222 258889999999888888887654 344555567886
|
| >d1rkxa_ c.2.1.2 (A:) CDP-glucose-4,6-dehydratase {Yersinia pseudotuberculosis [TaxId: 633]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: CDP-glucose-4,6-dehydratase species: Yersinia pseudotuberculosis [TaxId: 633]
Probab=99.17 E-value=1.3e-12 Score=118.74 Aligned_cols=188 Identities=13% Similarity=0.043 Sum_probs=108.7
Q ss_pred CCcEEEEEcCCChhHHHHHHHHHhcccCCCCCCeEEEEEecccchhhhhhhHhhh--hhhccCCccceEEeCCHHHHhC-
Q 019990 4 NPLRVLVTGAAGQIGYALVPMIARGIMLGPDQPVILHMLDIEPAAEALNGVKMEL--IDAAFPLLKGVVATTDVVEACK- 80 (332)
Q Consensus 4 ~~~kI~VtGaaG~IGs~l~~~L~~~~~~~~~~~~~i~l~D~~~~~~~~~~~~~dl--~~~~~~~~~~v~~~~~~~~a~~- 80 (332)
+.+||+||||+||||++|+..|++.|+ +|+.+|+.... ........ .+.......|++....+.++++
T Consensus 7 ~~KkILVTG~tGfIGs~lv~~Ll~~g~-------~V~~~~r~~~~--~~~~~~~~~~~~~i~~~~~Dl~d~~~l~~~~~~ 77 (356)
T d1rkxa_ 7 QGKRVFVTGHTGFKGGWLSLWLQTMGA-------TVKGYSLTAPT--VPSLFETARVADGMQSEIGDIRDQNKLLESIRE 77 (356)
T ss_dssp TTCEEEEETTTSHHHHHHHHHHHHTTC-------EEEEEESSCSS--SSCHHHHTTTTTTSEEEECCTTCHHHHHHHHHH
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHCCC-------EEEEEECCCCc--cHHHHhhhhcccCCeEEEeeccChHhhhhhhhh
Confidence 468999999999999999999999886 89999986431 11111111 1110011234444444555554
Q ss_pred -CCcEEEEecCCCCCC--CCChhHHHhhhHHHHHHHHHHHHhhcCCCcEEEEEeCChhhHHH---HHHHHCCCCCCCcEE
Q 019990 81 -DVNIAVMVGGFPRKE--GMERKDVMSKNVSIYKAQASALEKHAAPNCKVLVVANPANTNAL---ILKEFAPSIPAKNIT 154 (332)
Q Consensus 81 -~aDiVi~~ag~~~~~--~~~~~~~~~~N~~~~~~i~~~i~~~~~~~~~viv~snp~~~~~~---~~~~~~~~~~~~~i~ 154 (332)
..|+|+|+|+.+... ..........|+.++.++++++++.. ....++..|..+..... ...+....+.|...+
T Consensus 78 ~~~~~v~~~aa~~~~~~~~~~~~~~~~~Nv~g~~n~l~~~~~~~-~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~p~~~y 156 (356)
T d1rkxa_ 78 FQPEIVFHMAAQPLVRLSYSEPVETYSTNVMGTVYLLEAIRHVG-GVKAVVNITSDKCYDNKEWIWGYRENEAMGGYDPY 156 (356)
T ss_dssp HCCSEEEECCSCCCHHHHHHCHHHHHHHHTHHHHHHHHHHHHHC-CCCEEEEECCGGGBCCCCSSSCBCTTSCBCCSSHH
T ss_pred chhhhhhhhhccccccccccCCccccccccccchhhhhhhhccc-cccccccccccccccccccccccccccccCCCCcc
Confidence 568999998764321 11224467789999999999999985 33333333322111000 000000112334456
Q ss_pred EeecccHHHHHHHHHHHc---------CCCCCCeeeeEEEecCC---CceeecccCccc
Q 019990 155 CLTRLDHNRAMGQISERL---------KVHVSDVKNVIIWGNHS---STQYPDVNHATV 201 (332)
Q Consensus 155 ~~t~l~~~r~~~~~a~~~---------~v~~~~v~~~~V~G~hg---~~~v~~~s~~~v 201 (332)
+.++...+.....+++.+ ++....+|...|||++. ...++.+.++..
T Consensus 157 ~~~k~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~vyGp~~~~~~~~i~~~~~~~~ 215 (356)
T d1rkxa_ 157 SNSKGCAELVTSSYRNSFFNPANYGQHGTAVATVRAGNVIGGGDWALDRIVPDILRAFE 215 (356)
T ss_dssp HHHHHHHHHHHHHHHHHHSCGGGHHHHCCEEEEEECCCEECTTCCCSSCHHHHHHHHHH
T ss_pred ccccccchhhhhHHhhhcccchhccccCceEEeccCCCeeCCCcchhhHHHHHHHHHHh
Confidence 777777777777766644 44455667667899753 334455554444
|
| >d2bkaa1 c.2.1.2 (A:5-236) TAT-interacting protein TIP30 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: TAT-interacting protein TIP30 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.12 E-value=3.1e-11 Score=103.36 Aligned_cols=158 Identities=10% Similarity=0.104 Sum_probs=96.3
Q ss_pred CCcEEEEEcCCChhHHHHHHHHHhcccCCCCCCeEEEEEecccchhhhhhhHhhhhhhccCCccceEEeCCHHHHhCCCc
Q 019990 4 NPLRVLVTGAAGQIGYALVPMIARGIMLGPDQPVILHMLDIEPAAEALNGVKMELIDAAFPLLKGVVATTDVVEACKDVN 83 (332)
Q Consensus 4 ~~~kI~VtGaaG~IGs~l~~~L~~~~~~~~~~~~~i~l~D~~~~~~~~~~~~~dl~~~~~~~~~~v~~~~~~~~a~~~aD 83 (332)
+++||+||||+||||++++..|++.+... +|.+++++... ..... ...... ...|+....++.++++++|
T Consensus 13 ~~k~IlItGaTG~iG~~l~~~Ll~~g~~~-----~v~~~~R~~~~--~~~~~--~~~i~~-~~~D~~~~~~~~~~~~~~d 82 (232)
T d2bkaa1 13 QNKSVFILGASGETGRVLLKEILEQGLFS-----KVTLIGRRKLT--FDEEA--YKNVNQ-EVVDFEKLDDYASAFQGHD 82 (232)
T ss_dssp TCCEEEEECTTSHHHHHHHHHHHHHTCCS-----EEEEEESSCCC--CCSGG--GGGCEE-EECCGGGGGGGGGGGSSCS
T ss_pred CCCEEEEECCCcHHHHHHHHHHHhCCCCC-----EEEEEecChhh--hcccc--cceeee-eeecccccccccccccccc
Confidence 34689999999999999999999877532 78888875421 11000 011100 1123333456777899999
Q ss_pred EEEEecCCCCCCCCChhHHHhhhHHHHHHHHHHHHhhcCCCcEEEEEeCChhhHHHHHHHHCCCCCCCcEEEeecccHHH
Q 019990 84 IAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEKHAAPNCKVLVVANPANTNALILKEFAPSIPAKNITCLTRLDHNR 163 (332)
Q Consensus 84 iVi~~ag~~~~~~~~~~~~~~~N~~~~~~i~~~i~~~~~~~~~viv~snp~~~~~~~~~~~~~~~~~~~i~~~t~l~~~r 163 (332)
+|+|++|.... ..+..++...|.....++++.+.+.+ .. +++.+|... . ..++...|+-++...+.
T Consensus 83 ~vi~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~a~~~~-v~-~fi~~Ss~~-~----------~~~~~~~Y~~~K~~~E~ 148 (232)
T d2bkaa1 83 VGFCCLGTTRG-KAGAEGFVRVDRDYVLKSAELAKAGG-CK-HFNLLSSKG-A----------DKSSNFLYLQVKGEVEA 148 (232)
T ss_dssp EEEECCCCCHH-HHHHHHHHHHHTHHHHHHHHHHHHTT-CC-EEEEECCTT-C----------CTTCSSHHHHHHHHHHH
T ss_pred ccccccccccc-ccchhhhhhhcccccceeeecccccC-cc-ccccCCccc-c----------ccCccchhHHHHHHhhh
Confidence 99999986422 12334567788999999999998864 32 456555421 0 11122234445554443
Q ss_pred HHHHHHHHcCCC-CCCeeeeEEEecCC
Q 019990 164 AMGQISERLKVH-VSDVKNVIIWGNHS 189 (332)
Q Consensus 164 ~~~~~a~~~~v~-~~~v~~~~V~G~hg 189 (332)
.. +.++.+ ...+|+..++|++.
T Consensus 149 ~l----~~~~~~~~~IlRP~~i~G~~~ 171 (232)
T d2bkaa1 149 KV----EELKFDRYSVFRPGVLLCDRQ 171 (232)
T ss_dssp HH----HTTCCSEEEEEECCEEECTTG
T ss_pred cc----ccccccceEEecCceeecCCC
Confidence 22 345654 45678777888743
|
| >d1hdoa_ c.2.1.2 (A:) Biliverdin IX beta reductase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Biliverdin IX beta reductase species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.10 E-value=1.2e-10 Score=97.67 Aligned_cols=109 Identities=14% Similarity=0.156 Sum_probs=74.1
Q ss_pred CCcEEEEEcCCChhHHHHHHHHHhcccCCCCCCeEEEEEecccchhhhhhhHhhhhhhcc-CCccceEEeCCHHHHhCCC
Q 019990 4 NPLRVLVTGAAGQIGYALVPMIARGIMLGPDQPVILHMLDIEPAAEALNGVKMELIDAAF-PLLKGVVATTDVVEACKDV 82 (332)
Q Consensus 4 ~~~kI~VtGaaG~IGs~l~~~L~~~~~~~~~~~~~i~l~D~~~~~~~~~~~~~dl~~~~~-~~~~~v~~~~~~~~a~~~a 82 (332)
.|+||+|+||+|+||++++..|++.|+ +|++++++.. ++.. ...... ....|+....++.++++++
T Consensus 2 ~~kkIlV~GatG~iG~~v~~~Ll~~g~-------~V~~~~R~~~--~~~~----~~~~~~~~~~gD~~d~~~l~~al~~~ 68 (205)
T d1hdoa_ 2 AVKKIAIFGATGQTGLTTLAQAVQAGY-------EVTVLVRDSS--RLPS----EGPRPAHVVVGDVLQAADVDKTVAGQ 68 (205)
T ss_dssp CCCEEEEESTTSHHHHHHHHHHHHTTC-------EEEEEESCGG--GSCS----SSCCCSEEEESCTTSHHHHHHHHTTC
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHCcC-------EEEEEEcChh--hccc----ccccccccccccccchhhHHHHhcCC
Confidence 477999999999999999999999886 8999987542 2211 111101 1124555556678889999
Q ss_pred cEEEEecCCCCCCCCChhHHHhhhHHHHHHHHHHHHhhcCCCcEEEEEeC
Q 019990 83 NIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEKHAAPNCKVLVVAN 132 (332)
Q Consensus 83 DiVi~~ag~~~~~~~~~~~~~~~N~~~~~~i~~~i~~~~~~~~~viv~sn 132 (332)
|+||+++|..... .+ ...+...++++++++++.+. . ++|.+|.
T Consensus 69 d~vi~~~g~~~~~-~~----~~~~~~~~~~l~~aa~~~~v-~-r~i~~ss 111 (205)
T d1hdoa_ 69 DAVIVLLGTRNDL-SP----TTVMSEGARNIVAAMKAHGV-D-KVVACTS 111 (205)
T ss_dssp SEEEECCCCTTCC-SC----CCHHHHHHHHHHHHHHHHTC-C-EEEEECC
T ss_pred CEEEEEeccCCch-hh----hhhhHHHHHHHHHHHHhcCC-C-eEEEEee
Confidence 9999998864321 11 12345678889999998752 2 5666653
|
| >d1eq2a_ c.2.1.2 (A:) ADP-L-glycero-D-mannoheptose 6-epimerase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: ADP-L-glycero-D-mannoheptose 6-epimerase species: Escherichia coli [TaxId: 562]
Probab=99.09 E-value=4.5e-11 Score=105.43 Aligned_cols=166 Identities=16% Similarity=0.196 Sum_probs=106.4
Q ss_pred EEEEcCCChhHHHHHHHHHhcccCCCCCCeEEEEEecccchhhhhhhHhhhhhhccCCccceEEeCCHH------HHhCC
Q 019990 8 VLVTGAAGQIGYALVPMIARGIMLGPDQPVILHMLDIEPAAEALNGVKMELIDAAFPLLKGVVATTDVV------EACKD 81 (332)
Q Consensus 8 I~VtGaaG~IGs~l~~~L~~~~~~~~~~~~~i~l~D~~~~~~~~~~~~~dl~~~~~~~~~~v~~~~~~~------~a~~~ 81 (332)
|+||||+||||++|+..|++.|. .+|+.+|........ ..+.+.. ..+.....+.. ..+..
T Consensus 2 ILITGgsGfIGs~lv~~L~~~g~------~~V~~~d~~~~~~~~----~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~ 68 (307)
T d1eq2a_ 2 IIVTGGAGFIGSNIVKALNDKGI------TDILVVDNLKDGTKF----VNLVDLN---IADYMDKEDFLIQIMAGEEFGD 68 (307)
T ss_dssp EEEETTTSHHHHHHHHHHHTTTC------CCEEEEECCSSGGGG----HHHHTSC---CSEEEEHHHHHHHHHTTCCCSS
T ss_pred EEEecCccHHHHHHHHHHHhCCC------CeEEEEECCCCcchh----hcccccc---hhhhccchHHHHHHhhhhcccc
Confidence 89999999999999999998874 268888843211111 1111110 11222211211 12457
Q ss_pred CcEEEEecCCCCCCCCChhHHHhhhHHHHHHHHHHHHhhcCCCcEEEEEeCChhhHHHH--HHHHCCCCCCCcEEEeecc
Q 019990 82 VNIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEKHAAPNCKVLVVANPANTNALI--LKEFAPSIPAKNITCLTRL 159 (332)
Q Consensus 82 aDiVi~~ag~~~~~~~~~~~~~~~N~~~~~~i~~~i~~~~~~~~~viv~snp~~~~~~~--~~~~~~~~~~~~i~~~t~l 159 (332)
+++|+|+|+.......+.......|......++++++..+ .++++.+.......+. ..+.....++...|+.+++
T Consensus 69 ~~~i~~~aa~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~---i~~v~~ss~~~~~~~~~~~~~~~~~~~~~~~Y~~~K~ 145 (307)
T d1eq2a_ 69 VEAIFHEGACSSTTEWDGKYMMDNNYQYSKELLHYCLERE---IPFLYASSAATYGGRTSDFIESREYEKPLNVYGYSKF 145 (307)
T ss_dssp CCEEEECCSCCCTTCCCHHHHHHHTHHHHHHHHHHHHHHT---CCEEEEEEGGGGTTCCSCBCSSGGGCCCSSHHHHHHH
T ss_pred hhhhhhhccccccccccccccccccccccccccccccccc---ccccccccccccccccccccccccccccccccccccc
Confidence 8999999987655555556667778899999999888875 3455555332111000 0000001233446889999
Q ss_pred cHHHHHHHHHHHcCCCCCCeeeeEEEecCC
Q 019990 160 DHNRAMGQISERLKVHVSDVKNVIIWGNHS 189 (332)
Q Consensus 160 ~~~r~~~~~a~~~~v~~~~v~~~~V~G~hg 189 (332)
..+.+...+++..+++...+|.++|||+..
T Consensus 146 ~~e~~~~~~~~~~~~~~~~~r~~~vyGp~~ 175 (307)
T d1eq2a_ 146 LFDEYVRQILPEANSQIVGFRYFNVYGPRE 175 (307)
T ss_dssp HHHHHHHHHGGGCSSCEEEEEECEEESSSC
T ss_pred hhhhhccccccccccccccccceeEeeccc
Confidence 999999999999999999999999999743
|
| >d2q46a1 c.2.1.2 (A:2-253) Hypothetical protein At5g02240 (T7H20_290) {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Hypothetical protein At5g02240 (T7H20 290) species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=99.02 E-value=2.6e-10 Score=96.60 Aligned_cols=165 Identities=16% Similarity=0.100 Sum_probs=96.3
Q ss_pred CCcEEEEEcCCChhHHHHHHHHHhcccCCCCCCeEEEEEecccchhhhhhhHhhhhhhccCCccceEEeCCHHHHhCCCc
Q 019990 4 NPLRVLVTGAAGQIGYALVPMIARGIMLGPDQPVILHMLDIEPAAEALNGVKMELIDAAFPLLKGVVATTDVVEACKDVN 83 (332)
Q Consensus 4 ~~~kI~VtGaaG~IGs~l~~~L~~~~~~~~~~~~~i~l~D~~~~~~~~~~~~~dl~~~~~~~~~~v~~~~~~~~a~~~aD 83 (332)
+|++|+||||+||||++++..|++.+.. ..++.+.+++ +.. .++.........++....++.++++++|
T Consensus 2 ~~~tVlVtGatG~iG~~l~~~Ll~~g~~-----v~v~~~~R~~--~~~----~~~~~~~~~~~~d~~~~~~~~~~~~~~d 70 (252)
T d2q46a1 2 NLPTVLVTGASGRTGQIVYKKLKEGSDK-----FVAKGLVRSA--QGK----EKIGGEADVFIGDITDADSINPAFQGID 70 (252)
T ss_dssp SCCEEEEESTTSTTHHHHHHHHHHTTTT-----CEEEEEESCH--HHH----HHTTCCTTEEECCTTSHHHHHHHHTTCS
T ss_pred CCCEEEEECCccHHHHHHHHHHHHCCCc-----EEEEEEcCCH--HHH----HhccCCcEEEEeeeccccccccccccce
Confidence 5779999999999999999999988751 2444444432 111 1111110011234444455677899999
Q ss_pred EEEEecCCCCCC---------------CCChhHHHhhhHHHHHHHHHHHHhhcCCCcEEEEEeCChhhHHHHHHHHCCCC
Q 019990 84 IAVMVGGFPRKE---------------GMERKDVMSKNVSIYKAQASALEKHAAPNCKVLVVANPANTNALILKEFAPSI 148 (332)
Q Consensus 84 iVi~~ag~~~~~---------------~~~~~~~~~~N~~~~~~i~~~i~~~~~~~~~viv~snp~~~~~~~~~~~~~~~ 148 (332)
.|||+++..... ..........|....+.++....... .. .....+..... . +..
T Consensus 71 ~vi~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~-~~~~~s~~~~~-~-------~~~ 140 (252)
T d2q46a1 71 ALVILTSAVPKMKPGFDPTKGGRPEFIFEDGQYPEQVDWIGQKNQIDAAKVAG-VK-HIVVVGSMGGT-N-------PDH 140 (252)
T ss_dssp EEEECCCCCCEECTTCCTTSCCCCCEECCTTCSHHHHTTHHHHHHHHHHHHHT-CS-EEEEEEETTTT-C-------TTC
T ss_pred eeEEEEeeccccccccchhhhhhcccccccchhhhccccccceeecccccccc-cc-ccccccccccC-C-------CCc
Confidence 999998752110 00112234567778888888887775 22 33444422110 0 111
Q ss_pred CCCcEEEeecccHHHHHHHHHHHcCCCCCCeeeeEEEecCC
Q 019990 149 PAKNITCLTRLDHNRAMGQISERLKVHVSDVKNVIIWGNHS 189 (332)
Q Consensus 149 ~~~~i~~~t~l~~~r~~~~~a~~~~v~~~~v~~~~V~G~hg 189 (332)
+..................+.+..|++...+|+..++|+.+
T Consensus 141 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ilRp~~v~g~~~ 181 (252)
T d2q46a1 141 PLNKLGNGNILVWKRKAEQYLADSGTPYTIIRAGGLLDKEG 181 (252)
T ss_dssp GGGGGGGCCHHHHHHHHHHHHHHSSSCEEEEEECEEECSCT
T ss_pred ccccccccchhhhhhhhhhhhhcccccceeecceEEECCCc
Confidence 11111122333445556677788999999999999999854
|
| >d1n2sa_ c.2.1.2 (A:) dTDP-6-deoxy-L-lyxo-4-hexulose reductase (RmlD) {Salmonella enterica serovar typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: dTDP-6-deoxy-L-lyxo-4-hexulose reductase (RmlD) species: Salmonella enterica serovar typhimurium [TaxId: 90371]
Probab=98.80 E-value=1.7e-09 Score=94.72 Aligned_cols=100 Identities=19% Similarity=0.208 Sum_probs=66.1
Q ss_pred cEEEEEcCCChhHHHHHHHHHhcccCCCCCCeEEEEEecccchhhhhhhHhhhhhhccCCccceEEeCCHHHHhC--CCc
Q 019990 6 LRVLVTGAAGQIGYALVPMIARGIMLGPDQPVILHMLDIEPAAEALNGVKMELIDAAFPLLKGVVATTDVVEACK--DVN 83 (332)
Q Consensus 6 ~kI~VtGaaG~IGs~l~~~L~~~~~~~~~~~~~i~l~D~~~~~~~~~~~~~dl~~~~~~~~~~v~~~~~~~~a~~--~aD 83 (332)
|||+||||+||||++|+..|...+ +++.+|.+.. ... .| +.....+.+.++ +.|
T Consensus 1 MKILItG~tGfiG~~l~~~L~~~g--------~~v~~~~~~~--~~~---~D-----------l~~~~~~~~~i~~~~~D 56 (298)
T d1n2sa_ 1 MNILLFGKTGQVGWELQRSLAPVG--------NLIALDVHSK--EFC---GD-----------FSNPKGVAETVRKLRPD 56 (298)
T ss_dssp CEEEEECTTSHHHHHHHHHTTTTS--------EEEEECTTCS--SSC---CC-----------TTCHHHHHHHHHHHCCS
T ss_pred CEEEEECCCCHHHHHHHHHHHhCC--------CEEEEECCCc--ccc---Cc-----------CCCHHHHHHHHHHcCCC
Confidence 689999999999999999988766 4556665421 111 12 222223445554 469
Q ss_pred EEEEecCCCCC--CCCChhHHHhhhHHHHHHHHHHHHhhcCCCcEEEEEeC
Q 019990 84 IAVMVGGFPRK--EGMERKDVMSKNVSIYKAQASALEKHAAPNCKVLVVAN 132 (332)
Q Consensus 84 iVi~~ag~~~~--~~~~~~~~~~~N~~~~~~i~~~i~~~~~~~~~viv~sn 132 (332)
+|||+||.... ...........|...+..+.+++++.+ .+++++|+
T Consensus 57 ~Vih~Aa~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~---~~~~~~ss 104 (298)
T d1n2sa_ 57 VIVNAAAHTAVDKAESEPELAQLLNATSVEAIAKAANETG---AWVVHYST 104 (298)
T ss_dssp EEEECCCCCCHHHHTTCHHHHHHHHTHHHHHHHHHHTTTT---CEEEEEEE
T ss_pred EEEEecccccccccccCccccccccccccccchhhhhccc---cccccccc
Confidence 99999986421 123334566788999999999998764 35565554
|
| >d2a35a1 c.2.1.2 (A:4-215) Hypothetical protein PA4017 {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Hypothetical protein PA4017 species: Pseudomonas aeruginosa [TaxId: 287]
Probab=98.76 E-value=3.6e-09 Score=88.61 Aligned_cols=151 Identities=15% Similarity=0.136 Sum_probs=86.0
Q ss_pred CCcEEEEEcCCChhHHHHHHHHHhcccCCCCCCeEEEEEecccchhhhhhhHhhhhhhccCCccceEEeCCHHHH-hCCC
Q 019990 4 NPLRVLVTGAAGQIGYALVPMIARGIMLGPDQPVILHMLDIEPAAEALNGVKMELIDAAFPLLKGVVATTDVVEA-CKDV 82 (332)
Q Consensus 4 ~~~kI~VtGaaG~IGs~l~~~L~~~~~~~~~~~~~i~l~D~~~~~~~~~~~~~dl~~~~~~~~~~v~~~~~~~~a-~~~a 82 (332)
.++||+||||+||||++++..|++.+.. .+|....++... +...... ...++ .+..+. ..++
T Consensus 1 t~KkIlItGatG~iG~~lv~~L~~~~~~-----~~v~~~~r~~~~--------~~~~~~~-~~~d~---~~~~~~~~~~~ 63 (212)
T d2a35a1 1 TPKRVLLAGATGLTGEHLLDRILSEPTL-----AKVIAPARKALA--------EHPRLDN-PVGPL---AELLPQLDGSI 63 (212)
T ss_dssp CCCEEEEECTTSHHHHHHHHHHHHCTTC-----CEEECCBSSCCC--------CCTTEEC-CBSCH---HHHGGGCCSCC
T ss_pred CCCEEEEECCCcHHHHHHHHHHHhCCCe-----EEEEEEeCCchh--------hcccccc-cccch---hhhhhccccch
Confidence 3689999999999999999999987752 155555443210 0000000 00111 112222 3468
Q ss_pred cEEEEecCCCCCCCCChhHHHhhhHHHHHHHHHHHHhhcCCCcEEEEEeCChhhHHHHHHHHCCCCCCCcEEEeecccHH
Q 019990 83 NIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEKHAAPNCKVLVVANPANTNALILKEFAPSIPAKNITCLTRLDHN 162 (332)
Q Consensus 83 DiVi~~ag~~~~~~~~~~~~~~~N~~~~~~i~~~i~~~~~~~~~viv~snp~~~~~~~~~~~~~~~~~~~i~~~t~l~~~ 162 (332)
|.||+++|..........++...|.....++++++++.. .. +++++|. ... ...+...++-++...+
T Consensus 64 d~vi~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~-v~-~~i~~Ss-~~~----------~~~~~~~y~~~K~~~E 130 (212)
T d2a35a1 64 DTAFCCLGTTIKEAGSEEAFRAVDFDLPLAVGKRALEMG-AR-HYLVVSA-LGA----------DAKSSIFYNRVKGELE 130 (212)
T ss_dssp SEEEECCCCCHHHHSSHHHHHHHHTHHHHHHHHHHHHTT-CC-EEEEECC-TTC----------CTTCSSHHHHHHHHHH
T ss_pred heeeeeeeeeccccccccccccchhhhhhhccccccccc-cc-ccccccc-ccc----------ccccccchhHHHHHHh
Confidence 999999887533223345677888999999999998864 22 5566663 211 0111123333444333
Q ss_pred HHHHHHHHHcCCC-CCCeeeeEEEecC
Q 019990 163 RAMGQISERLKVH-VSDVKNVIIWGNH 188 (332)
Q Consensus 163 r~~~~~a~~~~v~-~~~v~~~~V~G~h 188 (332)
+.. +.++.+ ...+|+..|||+.
T Consensus 131 ~~l----~~~~~~~~~I~Rp~~v~G~~ 153 (212)
T d2a35a1 131 QAL----QEQGWPQLTIARPSLLFGPR 153 (212)
T ss_dssp HHH----TTSCCSEEEEEECCSEESTT
T ss_pred hhc----cccccccceeeCCcceeCCc
Confidence 321 234553 5567877788863
|
| >d1vl0a_ c.2.1.2 (A:) DTDP-4-dehydrorhamnose reductase RfbD {Clostridium acetobutylicum [TaxId: 1488]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: DTDP-4-dehydrorhamnose reductase RfbD species: Clostridium acetobutylicum [TaxId: 1488]
Probab=98.76 E-value=8.6e-10 Score=96.03 Aligned_cols=149 Identities=14% Similarity=0.179 Sum_probs=85.2
Q ss_pred cEEEEEcCCChhHHHHHHHHHhcccCCCCCCeEEEEEecccchhhhhhhHhhhhhhccCCccceEEeCCHHHHhC--CCc
Q 019990 6 LRVLVTGAAGQIGYALVPMIARGIMLGPDQPVILHMLDIEPAAEALNGVKMELIDAAFPLLKGVVATTDVVEACK--DVN 83 (332)
Q Consensus 6 ~kI~VtGaaG~IGs~l~~~L~~~~~~~~~~~~~i~l~D~~~~~~~~~~~~~dl~~~~~~~~~~v~~~~~~~~a~~--~aD 83 (332)
|||+||||+||||++|+..|...|+ +|+.+|+... |+.+ ..++.++++ +.|
T Consensus 2 MKIlItGasGfiG~~l~~~L~~~g~-------~Vi~~~r~~~---------D~~d-----------~~~~~~~l~~~~~d 54 (281)
T d1vl0a_ 2 MKILITGANGQLGREIQKQLKGKNV-------EVIPTDVQDL---------DITN-----------VLAVNKFFNEKKPN 54 (281)
T ss_dssp EEEEEESTTSHHHHHHHHHHTTSSE-------EEEEECTTTC---------CTTC-----------HHHHHHHHHHHCCS
T ss_pred CEEEEECCCCHHHHHHHHHHHhCCC-------EEEEeechhc---------cCCC-----------HHHHHHHHHHcCCC
Confidence 6899999999999999999998886 8999987421 2221 122344443 679
Q ss_pred EEEEecCCCCCC--CCChhHHHhhhHHHHHHHHHHHHhhcCCCcEEEEEeC-ChhhH--HHHHHHHCCCCCCCcEEEeec
Q 019990 84 IAVMVGGFPRKE--GMERKDVMSKNVSIYKAQASALEKHAAPNCKVLVVAN-PANTN--ALILKEFAPSIPAKNITCLTR 158 (332)
Q Consensus 84 iVi~~ag~~~~~--~~~~~~~~~~N~~~~~~i~~~i~~~~~~~~~viv~sn-p~~~~--~~~~~~~~~~~~~~~i~~~t~ 158 (332)
+|||+|+..... ..........|......+.+.+.... . .++..|. .+-.. .....+. ....+...++.++
T Consensus 55 ~vih~a~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~--~-~~~~~ss~~v~~~~~~~~~~e~-~~~~~~~~~~~~k 130 (281)
T d1vl0a_ 55 VVINCAAHTAVDKCEEQYDLAYKINAIGPKNLAAAAYSVG--A-EIVQISTDYVFDGEAKEPITEF-DEVNPQSAYGKTK 130 (281)
T ss_dssp EEEECCCCCCHHHHHHCHHHHHHHHTHHHHHHHHHHHHHT--C-EEEEEEEGGGSCSCCSSCBCTT-SCCCCCSHHHHHH
T ss_pred EEEeeccccccccccccchhhccccccccccccccccccc--c-cccccccceeeecccccccccc-ccccchhhhhhhh
Confidence 999998764311 11223345566777777777776653 2 3333332 21000 0000000 1111111222223
Q ss_pred ccHHHHHHHHHHHcCCCCCCeeeeEEEecCC
Q 019990 159 LDHNRAMGQISERLKVHVSDVKNVIIWGNHS 189 (332)
Q Consensus 159 l~~~r~~~~~a~~~~v~~~~v~~~~V~G~hg 189 (332)
.. ...+.+..+.+...+|...|||+++
T Consensus 131 ~~----~e~~~~~~~~~~~i~R~~~vyG~~~ 157 (281)
T d1vl0a_ 131 LE----GENFVKALNPKYYIVRTAWLYGDGN 157 (281)
T ss_dssp HH----HHHHHHHHCSSEEEEEECSEESSSS
T ss_pred hH----HHHHHHHhCCCccccceeEEeCCCc
Confidence 22 2334466788888899999999854
|
| >d1qyda_ c.2.1.2 (A:) Pinoresinol-lariciresinol reductase {Giant arborvitae (Thuja plicata) [TaxId: 3316]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Pinoresinol-lariciresinol reductase species: Giant arborvitae (Thuja plicata) [TaxId: 3316]
Probab=98.65 E-value=2.4e-08 Score=87.55 Aligned_cols=160 Identities=14% Similarity=0.077 Sum_probs=91.4
Q ss_pred CCcEEEEEcCCChhHHHHHHHHHhcccCCCCCCeEEEEEecccchhhhh-h-hHhhhhhhccC-CccceEEeCCHHHHhC
Q 019990 4 NPLRVLVTGAAGQIGYALVPMIARGIMLGPDQPVILHMLDIEPAAEALN-G-VKMELIDAAFP-LLKGVVATTDVVEACK 80 (332)
Q Consensus 4 ~~~kI~VtGaaG~IGs~l~~~L~~~~~~~~~~~~~i~l~D~~~~~~~~~-~-~~~dl~~~~~~-~~~~v~~~~~~~~a~~ 80 (332)
+++||+||||+||||++++..|++.|+ +|+.++++....... . ....+.+.... ...++.....+.++++
T Consensus 2 ~k~KILVtGatG~iG~~l~~~L~~~G~-------~V~~~~R~~~~~~~~~~~~~~~~~~~~v~~v~~d~~d~~~~~~~~~ 74 (312)
T d1qyda_ 2 KKSRVLIVGGTGYIGKRIVNASISLGH-------PTYVLFRPEVVSNIDKVQMLLYFKQLGAKLIEASLDDHQRLVDALK 74 (312)
T ss_dssp CCCCEEEESTTSTTHHHHHHHHHHTTC-------CEEEECCSCCSSCHHHHHHHHHHHTTTCEEECCCSSCHHHHHHHHT
T ss_pred CCCEEEEECCCCHHHHHHHHHHHhCCC-------EEEEEECCCcccchhHHHHHhhhccCCcEEEEeecccchhhhhhcc
Confidence 567899999999999999999999886 788887654211111 0 01111111111 1234444455677889
Q ss_pred CCcEEEEecCCCCCCCCChhHHHhhhHHHHHHHHHHHHhhcCCCcEEEEEeCC-hhhHHHHHHHHCCCCCCCcEEEeecc
Q 019990 81 DVNIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEKHAAPNCKVLVVANP-ANTNALILKEFAPSIPAKNITCLTRL 159 (332)
Q Consensus 81 ~aDiVi~~ag~~~~~~~~~~~~~~~N~~~~~~i~~~i~~~~~~~~~viv~snp-~~~~~~~~~~~~~~~~~~~i~~~t~l 159 (332)
+++.++++++.... ..|......++.++++.. ..++++.|.. ++.. ..-.+.. ...+..
T Consensus 75 ~~~~~~~~~~~~~~---------~~~~~~~~~~l~~a~~~~--~~~~v~~Ss~g~~~~--------~~~~~~~-~~~~~~ 134 (312)
T d1qyda_ 75 QVDVVISALAGGVL---------SHHILEQLKLVEAIKEAG--NIKRFLPSEFGMDPD--------IMEHALQ-PGSITF 134 (312)
T ss_dssp TCSEEEECCCCSSS---------STTTTTHHHHHHHHHHSC--CCSEEECSCCSSCTT--------SCCCCCS-STTHHH
T ss_pred Ccchhhhhhhhccc---------ccchhhhhHHHHHHHHhc--CCcEEEEeeccccCC--------Ccccccc-hhhhhh
Confidence 99999998764321 112333455666777664 3455555532 1100 0001111 122333
Q ss_pred cHHHHHHHHHHHcCCCCCCeeeeEEEecCCC
Q 019990 160 DHNRAMGQISERLKVHVSDVKNVIIWGNHSS 190 (332)
Q Consensus 160 ~~~r~~~~~a~~~~v~~~~v~~~~V~G~hg~ 190 (332)
...+....+.+..+++...+|...++|....
T Consensus 135 ~~~~~~~~~~~~~~~~~~i~r~~~~~g~~~~ 165 (312)
T d1qyda_ 135 IDKRKVRRAIEAASIPYTYVSSNMFAGYFAG 165 (312)
T ss_dssp HHHHHHHHHHHHTTCCBCEEECCEEHHHHTT
T ss_pred HHHHHHHHhhcccccceEEeccceeecCCcc
Confidence 4444455566778999999998888886443
|
| >d1nffa_ c.2.1.2 (A:) Putative oxidoreductase Rv2002 {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Putative oxidoreductase Rv2002 species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=98.55 E-value=4.6e-07 Score=77.43 Aligned_cols=161 Identities=15% Similarity=0.076 Sum_probs=100.3
Q ss_pred CCcEEEEEcCCChhHHHHHHHHHhcccCCCCCCeEEEEEecccchhhhhhhHhhhhhhccCCccceEEeCCHHHH-----
Q 019990 4 NPLRVLVTGAAGQIGYALVPMIARGIMLGPDQPVILHMLDIEPAAEALNGVKMELIDAAFPLLKGVVATTDVVEA----- 78 (332)
Q Consensus 4 ~~~kI~VtGaaG~IGs~l~~~L~~~~~~~~~~~~~i~l~D~~~~~~~~~~~~~dl~~~~~~~~~~v~~~~~~~~a----- 78 (332)
+.+.++||||++.||.+++..|++.|. +|.+.|++. +.++....++......+..|++...++.+.
T Consensus 5 ~gK~alITGas~GIG~aia~~la~~G~-------~V~~~~r~~--~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~ 75 (244)
T d1nffa_ 5 TGKVALVSGGARGMGASHVRAMVAEGA-------KVVFGDILD--EEGKAMAAELADAARYVHLDVTQPAQWKAAVDTAV 75 (244)
T ss_dssp TTCEEEEETTTSHHHHHHHHHHHHTTC-------EEEEEESCH--HHHHHHHHHTGGGEEEEECCTTCHHHHHHHHHHHH
T ss_pred CCCEEEEeCCCCHHHHHHHHHHHHCCC-------EEEEEECCH--HHHHHHHHHhhCcceEEEeecCCHHHHHHHHHHHH
Confidence 357899999999999999999999886 899999864 345544455543222223444443333322
Q ss_pred --hCCCcEEEEecCCCCCC---CCChh---HHHhhhHHHH----HHHHHHHHhhcCCCcEEEEEeCChhhHHHHHHHHCC
Q 019990 79 --CKDVNIAVMVGGFPRKE---GMERK---DVMSKNVSIY----KAQASALEKHAAPNCKVLVVANPANTNALILKEFAP 146 (332)
Q Consensus 79 --~~~aDiVi~~ag~~~~~---~~~~~---~~~~~N~~~~----~~i~~~i~~~~~~~~~viv~snp~~~~~~~~~~~~~ 146 (332)
+...|++|+.||..... ..+.+ ..++.|+... +..++.+.+. ..+++|++++.... .
T Consensus 76 ~~~g~idilinnAG~~~~~~~~~~~~~~~~~~~~vNl~~~~~~~~~~~~~m~~~--~~G~Ii~isS~~~~---------~ 144 (244)
T d1nffa_ 76 TAFGGLHVLVNNAGILNIGTIEDYALTEWQRILDVNLTGVFLGIRAVVKPMKEA--GRGSIINISSIEGL---------A 144 (244)
T ss_dssp HHHSCCCEEEECCCCCCCBCTTTSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHH--TCEEEEEECCGGGT---------S
T ss_pred HHhCCCeEEEECCcccCCCchhhCCHHHHhHHhhcccchhhHHHHHHHhHHHhc--CcceEEeccccccc---------c
Confidence 34689999999874321 22332 2456666554 4444455554 35677888764321 1
Q ss_pred CCCCCcEEEeecccHHHHHHHHHHHcCCCCCCeeeeEEEec
Q 019990 147 SIPAKNITCLTRLDHNRAMGQISERLKVHVSDVKNVIIWGN 187 (332)
Q Consensus 147 ~~~~~~i~~~t~l~~~r~~~~~a~~~~v~~~~v~~~~V~G~ 187 (332)
+.+....|+.+|-....+.+.+|+.++ +..||. +.+-+
T Consensus 145 ~~~~~~~Y~asKaal~~ltk~lA~el~--~~gIrV-N~I~P 182 (244)
T d1nffa_ 145 GTVACHGYTATKFAVRGLTKSTALELG--PSGIRV-NSIHP 182 (244)
T ss_dssp CCTTBHHHHHHHHHHHHHHHHHHHHHG--GGTEEE-EEEEE
T ss_pred ccccccchhhHHHHHHHHHHHHHHHhc--ccCEEE-EEEee
Confidence 233333577788778888888888865 566774 44444
|
| >d1qyca_ c.2.1.2 (A:) Phenylcoumaran benzylic ether reductase {Loblolly pine (Pinus taeda) [TaxId: 3352]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Phenylcoumaran benzylic ether reductase species: Loblolly pine (Pinus taeda) [TaxId: 3352]
Probab=98.51 E-value=5.4e-08 Score=84.64 Aligned_cols=155 Identities=15% Similarity=0.094 Sum_probs=83.6
Q ss_pred CCcEEEEEcCCChhHHHHHHHHHhcccCCCCCCeEEEEEecccchhhhhhhHhhhhhhc---cC-CccceEEeCCHHHHh
Q 019990 4 NPLRVLVTGAAGQIGYALVPMIARGIMLGPDQPVILHMLDIEPAAEALNGVKMELIDAA---FP-LLKGVVATTDVVEAC 79 (332)
Q Consensus 4 ~~~kI~VtGaaG~IGs~l~~~L~~~~~~~~~~~~~i~l~D~~~~~~~~~~~~~dl~~~~---~~-~~~~v~~~~~~~~a~ 79 (332)
.++||+||||+||||++++..|++.|+ +|+.++++............+.... .. ...++.......+++
T Consensus 2 ~kkKILVtGatG~iG~~l~~~L~~~G~-------~V~~l~R~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~ 74 (307)
T d1qyca_ 2 SRSRILLIGATGYIGRHVAKASLDLGH-------PTFLLVRESTASSNSEKAQLLESFKASGANIVHGSIDDHASLVEAV 74 (307)
T ss_dssp CCCCEEEESTTSTTHHHHHHHHHHTTC-------CEEEECCCCCTTTTHHHHHHHHHHHTTTCEEECCCTTCHHHHHHHH
T ss_pred CCCEEEEECCCcHHHHHHHHHHHHCCC-------eEEEEECCCccccchhHHHHHHhhccCCcEEEEeecccchhhhhhh
Confidence 357899999999999999999999886 7888987543211111111111110 00 112333333455668
Q ss_pred CCCcEEEEecCCCCCCCCChhHHHhhhHHHHHHHHHHHHhhcCCCcEEEEEeCChhhHHHHHHHHCCCCCCCcEEEeecc
Q 019990 80 KDVNIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEKHAAPNCKVLVVANPANTNALILKEFAPSIPAKNITCLTRL 159 (332)
Q Consensus 80 ~~aDiVi~~ag~~~~~~~~~~~~~~~N~~~~~~i~~~i~~~~~~~~~viv~snp~~~~~~~~~~~~~~~~~~~i~~~t~l 159 (332)
++++.|++.++.... .....+.+++...+ ...++..|...... ...+... ......
T Consensus 75 ~~~~~vi~~~~~~~~-------------~~~~~~~~a~~~~~--~~~~~~~s~~~~~~--------~~~~~~~-~~~~~~ 130 (307)
T d1qyca_ 75 KNVDVVISTVGSLQI-------------ESQVNIIKAIKEVG--TVKRFFPSEFGNDV--------DNVHAVE-PAKSVF 130 (307)
T ss_dssp HTCSEEEECCCGGGS-------------GGGHHHHHHHHHHC--CCSEEECSCCSSCT--------TSCCCCT-THHHHH
T ss_pred hhceeeeeccccccc-------------chhhHHHHHHHHhc--cccceeeecccccc--------ccccccc-cccccc
Confidence 899999998754221 11234455566654 22334444211100 0001100 011122
Q ss_pred cHHHHHHHHHHHcCCCCCCeeeeEEEecCC
Q 019990 160 DHNRAMGQISERLKVHVSDVKNVIIWGNHS 189 (332)
Q Consensus 160 ~~~r~~~~~a~~~~v~~~~v~~~~V~G~hg 189 (332)
........+.+..+.+...+|..+++|+..
T Consensus 131 ~~~~~~~~~~~~~~~~~~i~r~~~v~g~~~ 160 (307)
T d1qyca_ 131 EVKAKVRRAIEAEGIPYTYVSSNCFAGYFL 160 (307)
T ss_dssp HHHHHHHHHHHHHTCCBEEEECCEEHHHHT
T ss_pred cccccccchhhccCCCceecccceecCCCc
Confidence 233334445567799999999999888643
|
| >d1k2wa_ c.2.1.2 (A:) Sorbitol dehydrogenase {Rhodobacter sphaeroides [TaxId: 1063]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Sorbitol dehydrogenase species: Rhodobacter sphaeroides [TaxId: 1063]
Probab=98.50 E-value=2.5e-07 Score=79.68 Aligned_cols=165 Identities=19% Similarity=0.142 Sum_probs=101.5
Q ss_pred CCCCCcEEEEEcCCChhHHHHHHHHHhcccCCCCCCeEEEEEecccchhhhhhhHhhhhhhccCCccceEEeCCHHHH--
Q 019990 1 MAKNPLRVLVTGAAGQIGYALVPMIARGIMLGPDQPVILHMLDIEPAAEALNGVKMELIDAAFPLLKGVVATTDVVEA-- 78 (332)
Q Consensus 1 m~~~~~kI~VtGaaG~IGs~l~~~L~~~~~~~~~~~~~i~l~D~~~~~~~~~~~~~dl~~~~~~~~~~v~~~~~~~~a-- 78 (332)
|.-+.++++||||++.||.+++..|++.|. +|++.|++. +.++....++......+..|++...++.+.
T Consensus 1 M~L~gK~alVTGas~GIG~aia~~la~~Ga-------~V~~~~r~~--~~l~~~~~~~~~~~~~~~~Dvt~~~~v~~~~~ 71 (256)
T d1k2wa_ 1 MRLDGKTALITGSARGIGRAFAEAYVREGA-------RVAIADINL--EAARATAAEIGPAACAIALDVTDQASIDRCVA 71 (256)
T ss_dssp CTTTTEEEEEETCSSHHHHHHHHHHHHTTE-------EEEEEESCH--HHHHHHHHHHCTTEEEEECCTTCHHHHHHHHH
T ss_pred CCCCCCEEEEeCCCCHHHHHHHHHHHHCCC-------EEEEEECCH--HHHHHHHHHhCCceEEEEeeCCCHHHHHHHHH
Confidence 666778899999999999999999999886 899999864 445544444432212223345443333322
Q ss_pred -----hCCCcEEEEecCCCCCC---CCChh---HHHhhhHHHHHH----HHHHHHhhcCCCcEEEEEeCChhhHHHHHHH
Q 019990 79 -----CKDVNIAVMVGGFPRKE---GMERK---DVMSKNVSIYKA----QASALEKHAAPNCKVLVVANPANTNALILKE 143 (332)
Q Consensus 79 -----~~~aDiVi~~ag~~~~~---~~~~~---~~~~~N~~~~~~----i~~~i~~~~~~~~~viv~snp~~~~~~~~~~ 143 (332)
+-..|++|+.||..... ..+.+ ..+..|+..... ++..+.+.. ..+.+|++|+....
T Consensus 72 ~~~~~~g~iDilVnnAg~~~~~~~~~~~~~~~~~~~~vNl~g~~~~~~~~~~~~~~~~-~~g~Iv~isS~~~~------- 143 (256)
T d1k2wa_ 72 ELLDRWGSIDILVNNAALFDLAPIVEITRESYDRLFAINVSGTLFMMQAVARAMIAGG-RGGKIINMASQAGR------- 143 (256)
T ss_dssp HHHHHHSCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHT-SCEEEEEECCGGGT-------
T ss_pred HHHHHhCCccEEEeecccccccccccCCHHHHHhhhceeeeccccchhhccchhHHhc-cCCccccccchhhc-------
Confidence 34689999999974321 12222 345667655433 444444433 34677777753321
Q ss_pred HCCCCCCCcEEEeecccHHHHHHHHHHHcCCCCCCeeeeEEEec
Q 019990 144 FAPSIPAKNITCLTRLDHNRAMGQISERLKVHVSDVKNVIIWGN 187 (332)
Q Consensus 144 ~~~~~~~~~i~~~t~l~~~r~~~~~a~~~~v~~~~v~~~~V~G~ 187 (332)
.+.+..-.|+.+|-.-..+.+.+|..++ +..||. +.+-+
T Consensus 144 --~~~~~~~~Y~asKaal~~lt~~lA~el~--~~gIrV-N~V~P 182 (256)
T d1k2wa_ 144 --RGEALVGVYCATKAAVISLTQSAGLNLI--RHGINV-NAIAP 182 (256)
T ss_dssp --SCCTTCHHHHHHHHHHHHHHHHHHHHHG--GGTEEE-EEEEE
T ss_pred --cccccccchhhhhhHHHHHHHHHHHHhc--ccCeEE-EEEec
Confidence 1233333567777777788888888876 566774 44443
|
| >d1mv8a2 c.2.1.6 (A:1-202) GDP-mannose 6-dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: GDP-mannose 6-dehydrogenase species: Pseudomonas aeruginosa [TaxId: 287]
Probab=98.47 E-value=1.6e-06 Score=71.71 Aligned_cols=75 Identities=19% Similarity=0.274 Sum_probs=55.9
Q ss_pred cEEEEEcCCChhHHHHHHHHHhcccCCCCCCeEEEEEecccchhhhhhhHhhhhhhccC--------------CccceEE
Q 019990 6 LRVLVTGAAGQIGYALVPMIARGIMLGPDQPVILHMLDIEPAAEALNGVKMELIDAAFP--------------LLKGVVA 71 (332)
Q Consensus 6 ~kI~VtGaaG~IGs~l~~~L~~~~~~~~~~~~~i~l~D~~~~~~~~~~~~~dl~~~~~~--------------~~~~v~~ 71 (332)
|||+|+| +|++|..+|..|+..|+ +|..+|.+. ++.+ .+.....+ ....+..
T Consensus 1 MkI~ViG-lG~vGl~~a~~la~~g~-------~V~g~D~n~--~~i~----~ln~g~~p~~e~~~~~~l~~~~~~~~~~~ 66 (202)
T d1mv8a2 1 MRISIFG-LGYVGAVCAGCLSARGH-------EVIGVDVSS--TKID----LINQGKSPIVEPGLEALLQQGRQTGRLSG 66 (202)
T ss_dssp CEEEEEC-CSTTHHHHHHHHHHTTC-------EEEEECSCH--HHHH----HHHTTCCSSCCTTHHHHHHHHHHTTCEEE
T ss_pred CEEEEEC-CCHhHHHHHHHHHhCCC-------cEEEEeCCH--HHHH----HhcccCCcccchhhhhhhhhhhccccccc
Confidence 6899999 79999999999999886 899999864 2222 12111110 1245677
Q ss_pred eCCHHHHhCCCcEEEEecCCCCC
Q 019990 72 TTDVVEACKDVNIAVMVGGFPRK 94 (332)
Q Consensus 72 ~~~~~~a~~~aDiVi~~ag~~~~ 94 (332)
.++..++++++|+++++.+.|..
T Consensus 67 ~~~~~~~i~~~d~i~i~VpTP~~ 89 (202)
T d1mv8a2 67 TTDFKKAVLDSDVSFICVGTPSK 89 (202)
T ss_dssp ESCHHHHHHTCSEEEECCCCCBC
T ss_pred CCCHHHHHhhCCEEEEecCcccc
Confidence 88899999999999999887753
|
| >d1cyda_ c.2.1.2 (A:) Carbonyl reductase {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Carbonyl reductase species: Mouse (Mus musculus) [TaxId: 10090]
Probab=98.46 E-value=6.7e-07 Score=76.27 Aligned_cols=164 Identities=14% Similarity=0.066 Sum_probs=99.4
Q ss_pred CCCCCcEEEEEcCCChhHHHHHHHHHhcccCCCCCCeEEEEEecccchhhhhhhHhhhhhhccCCccceEEeCCHHHHh-
Q 019990 1 MAKNPLRVLVTGAAGQIGYALVPMIARGIMLGPDQPVILHMLDIEPAAEALNGVKMELIDAAFPLLKGVVATTDVVEAC- 79 (332)
Q Consensus 1 m~~~~~kI~VtGaaG~IGs~l~~~L~~~~~~~~~~~~~i~l~D~~~~~~~~~~~~~dl~~~~~~~~~~v~~~~~~~~a~- 79 (332)
|+-+.++++||||++.||.+++..|++.|. +|.+.|++. +.+.....++.... ....|++...++.+++
T Consensus 1 mdl~GK~alITGas~GIG~aia~~la~~Ga-------~V~~~~r~~--~~l~~~~~~~~~~~-~~~~Dv~~~~~v~~~~~ 70 (242)
T d1cyda_ 1 LNFSGLRALVTGAGKGIGRDTVKALHASGA-------KVVAVTRTN--SDLVSLAKECPGIE-PVCVDLGDWDATEKALG 70 (242)
T ss_dssp CCCTTCEEEEESTTSHHHHHHHHHHHHTTC-------EEEEEESCH--HHHHHHHHHSTTCE-EEECCTTCHHHHHHHHT
T ss_pred CCCCCCEEEEeCCCcHHHHHHHHHHHHCCC-------EEEEEECCH--HHHHHHHHhcCCCe-EEEEeCCCHHHHHHHHH
Confidence 666778999999999999999999999886 899999864 33443333333211 1123444333444443
Q ss_pred --CCCcEEEEecCCCCCC---CCChh---HHHhhhHHHHHHH----HHHHHhhcCCCcEEEEEeCChhhHHHHHHHHCCC
Q 019990 80 --KDVNIAVMVGGFPRKE---GMERK---DVMSKNVSIYKAQ----ASALEKHAAPNCKVLVVANPANTNALILKEFAPS 147 (332)
Q Consensus 80 --~~aDiVi~~ag~~~~~---~~~~~---~~~~~N~~~~~~i----~~~i~~~~~~~~~viv~snp~~~~~~~~~~~~~~ 147 (332)
...|++|+.||..... ..+.+ ..++.|+...-.+ .+.+.+.. ..+.+|++++.... .+
T Consensus 71 ~~g~iDilVnnAg~~~~~~~~~~~~~~~~~~~~vnl~~~~~~~~~~~~~~~~~~-~~g~ii~isS~~~~---------~~ 140 (242)
T d1cyda_ 71 GIGPVDLLVNNAALVIMQPFLEVTKEAFDRSFSVNLRSVFQVSQMVARDMINRG-VPGSIVNVSSMVAH---------VT 140 (242)
T ss_dssp TCCCCSEEEECCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHT-CCEEEEEECCGGGT---------SC
T ss_pred HcCCCeEEEECCccccchhHHHHHHHHHHHHHHHHhccchHHHHHhchhhhhhc-ccCcccccchhhcc---------cc
Confidence 4679999999874321 12322 2455666554444 33333332 34577777753221 12
Q ss_pred CCCCcEEEeecccHHHHHHHHHHHcCCCCCCeeeeEEEec
Q 019990 148 IPAKNITCLTRLDHNRAMGQISERLKVHVSDVKNVIIWGN 187 (332)
Q Consensus 148 ~~~~~i~~~t~l~~~r~~~~~a~~~~v~~~~v~~~~V~G~ 187 (332)
.|..-.|+.+|-.-..+.+.+|..++ +..||. +.+-+
T Consensus 141 ~~~~~~Y~asKaal~~lt~~lA~e~~--~~gIrv-N~I~P 177 (242)
T d1cyda_ 141 FPNLITYSSTKGAMTMLTKAMAMELG--PHKIRV-NSVNP 177 (242)
T ss_dssp CTTBHHHHHHHHHHHHHHHHHHHHHG--GGTEEE-EEEEE
T ss_pred CCccccccchHHHHHHHHHHHHHHhC--ccCeec-ccCCC
Confidence 23233567777777888888888865 566774 44444
|
| >d1f0ya2 c.2.1.6 (A:12-203) Short chain L-3-hydroxyacyl CoA dehydrogenase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Short chain L-3-hydroxyacyl CoA dehydrogenase species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.42 E-value=1.2e-06 Score=71.97 Aligned_cols=104 Identities=19% Similarity=0.248 Sum_probs=71.1
Q ss_pred CcEEEEEcCCChhHHHHHHHHHhcccCCCCCCeEEEEEecccchhhhhhhHhhh----hhh---cc------------CC
Q 019990 5 PLRVLVTGAAGQIGYALVPMIARGIMLGPDQPVILHMLDIEPAAEALNGVKMEL----IDA---AF------------PL 65 (332)
Q Consensus 5 ~~kI~VtGaaG~IGs~l~~~L~~~~~~~~~~~~~i~l~D~~~~~~~~~~~~~dl----~~~---~~------------~~ 65 (332)
-+||+|+| +|.+|+.+|..++..|+ +|.++|.+.. .+......+ ... .. ..
T Consensus 4 IkkvaViG-aG~mG~~iA~~~a~~G~-------~V~l~D~~~~--~l~~a~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~ 73 (192)
T d1f0ya2 4 VKHVTVIG-GGLMGAGIAQVAAATGH-------TVVLVDQTED--ILAKSKKGIEESLRKVAKKKFAENPKAGDEFVEKT 73 (192)
T ss_dssp CCEEEEEC-CSHHHHHHHHHHHHTTC-------EEEEECSCHH--HHHHHHHHHHHHHHHHHHTTSSSCHHHHHHHHHHH
T ss_pred eEEEEEEC-cCHHHHHHHHHHHhCCC-------cEEEEECChH--HHHHHHhhHHHHHHHHHHhhhhccchhhHHHHHHH
Confidence 35999999 69999999999999887 9999998642 222111111 110 00 01
Q ss_pred ccceEEeCCHHHHhCCCcEEEEecCCCCCCCCChhHHHhhhHHHHHHHHHHHHhhcCCCcEEEEEeCCh
Q 019990 66 LKGVVATTDVVEACKDVNIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEKHAAPNCKVLVVANPA 134 (332)
Q Consensus 66 ~~~v~~~~~~~~a~~~aDiVi~~ag~~~~~~~~~~~~~~~N~~~~~~i~~~i~~~~~~~~~viv~snp~ 134 (332)
..++....++.+++++||+|+-+.- .|.+.-+++...+.+++++++ +++||..
T Consensus 74 l~~i~~~~d~~~a~~~ad~ViEav~--------------E~l~~K~~v~~~l~~~~~~~~--ilasnTS 126 (192)
T d1f0ya2 74 LSTIATSTDAASVVHSTDLVVEAIV--------------ENLKVKNELFKRLDKFAAEHT--IFASNTS 126 (192)
T ss_dssp HHTEEEESCHHHHTTSCSEEEECCC--------------SCHHHHHHHHHHHTTTSCTTC--EEEECCS
T ss_pred HhhccccchhHhhhcccceehhhcc--------------cchhHHHHHHHHHhhhcccCc--eeeccCc
Confidence 2457778888899999999997631 134556788899999886654 5567743
|
| >d1xg5a_ c.2.1.2 (A:) Putative dehydrogenase ARPG836 (MGC4172) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Putative dehydrogenase ARPG836 (MGC4172) species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.41 E-value=9.9e-07 Score=75.87 Aligned_cols=165 Identities=14% Similarity=0.215 Sum_probs=99.1
Q ss_pred CCcEEEEEcCCChhHHHHHHHHHhcccCCCCCCeEEEEEecccchhhhhhhHhhhhhhcc-----CCccceEEeCCHHH-
Q 019990 4 NPLRVLVTGAAGQIGYALVPMIARGIMLGPDQPVILHMLDIEPAAEALNGVKMELIDAAF-----PLLKGVVATTDVVE- 77 (332)
Q Consensus 4 ~~~kI~VtGaaG~IGs~l~~~L~~~~~~~~~~~~~i~l~D~~~~~~~~~~~~~dl~~~~~-----~~~~~v~~~~~~~~- 77 (332)
+.+.++||||++.||.+++..|++.|. .|++.|++. ++++....++..... .+..|++...++.+
T Consensus 9 k~Kv~lITGas~GIG~aiA~~la~~G~-------~Vv~~~r~~--~~l~~~~~~l~~~~~~~~~~~~~~Dls~~~~v~~~ 79 (257)
T d1xg5a_ 9 RDRLALVTGASGGIGAAVARALVQQGL-------KVVGCARTV--GNIEELAAECKSAGYPGTLIPYRCDLSNEEDILSM 79 (257)
T ss_dssp TTCEEEEESTTSHHHHHHHHHHHHTTC-------EEEEEESCH--HHHHHHHHHHHHTTCSSEEEEEECCTTCHHHHHHH
T ss_pred CCCEEEEeCCCCHHHHHHHHHHHHCCC-------EEEEEECCH--HHHHHHHHHHHhcCCCceEEEEEccCCCHHHHHHH
Confidence 456799999999999999999999886 899999864 345554445543211 12234443333322
Q ss_pred ------HhCCCcEEEEecCCCCCC---CCChh---HHHhhhHHH----HHHHHHHHHhhcCCCcEEEEEeCChhhHHHHH
Q 019990 78 ------ACKDVNIAVMVGGFPRKE---GMERK---DVMSKNVSI----YKAQASALEKHAAPNCKVLVVANPANTNALIL 141 (332)
Q Consensus 78 ------a~~~aDiVi~~ag~~~~~---~~~~~---~~~~~N~~~----~~~i~~~i~~~~~~~~~viv~snp~~~~~~~~ 141 (332)
.+...|++|+.||..... ..+.+ ..+..|+.. ++.+++.+++....++++|++++....
T Consensus 80 v~~~~~~~g~iD~lVnnAg~~~~~~~~~~~~~~~~~~~~~nl~~~~~~~~~~~~~~~~~~~~~g~Ii~isS~~~~----- 154 (257)
T d1xg5a_ 80 FSAIRSQHSGVDICINNAGLARPDTLLSGSTSGWKDMFNVNVLALSICTREAYQSMKERNVDDGHIININSMSGH----- 154 (257)
T ss_dssp HHHHHHHHCCCSEEEECCCCCCCCCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHTTCCSCEEEEECCGGGT-----
T ss_pred HHHHHHhcCCCCEEEecccccCCCccccccHHHHHhhhhhhhhHHHHHHHHHHHHHHHhccCCCceEEEechHhc-----
Confidence 244789999999874321 12222 234555433 355555555553235677777764321
Q ss_pred HHHCCCCCCC--cEEEeecccHHHHHHHHHHHcCCCCCCeeeeEEEec
Q 019990 142 KEFAPSIPAK--NITCLTRLDHNRAMGQISERLKVHVSDVKNVIIWGN 187 (332)
Q Consensus 142 ~~~~~~~~~~--~i~~~t~l~~~r~~~~~a~~~~v~~~~v~~~~V~G~ 187 (332)
...|.. ..|+.+|-.-..+.+.+|..+.-.+..||. +.+.+
T Consensus 155 ----~~~p~~~~~~Y~~sKaal~~ltr~la~el~~~~~~I~v-n~i~P 197 (257)
T d1xg5a_ 155 ----RVLPLSVTHFYSATKYAVTALTEGLRQELREAQTHIRA-TCISP 197 (257)
T ss_dssp ----SCCSCGGGHHHHHHHHHHHHHHHHHHHHHHHTTCCCEE-EEEEE
T ss_pred ----CCCCCcccHHHHHHHHHHHhCHHHHHHHHHhCCCCEEE-EEEeC
Confidence 112211 246777777777888888877545566774 33443
|
| >d1bdba_ c.2.1.2 (A:) Cis-biphenyl-2,3-dihydrodiol-2,3-dehydrogenase {Pseudomonas sp., lb400 [TaxId: 306]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Cis-biphenyl-2,3-dihydrodiol-2,3-dehydrogenase species: Pseudomonas sp., lb400 [TaxId: 306]
Probab=98.40 E-value=6.8e-07 Score=77.73 Aligned_cols=162 Identities=19% Similarity=0.143 Sum_probs=98.0
Q ss_pred CCCCCcEEEEEcCCChhHHHHHHHHHhcccCCCCCCeEEEEEecccchhhhhhhHhhhhhhccCCccceEEeCCHHH---
Q 019990 1 MAKNPLRVLVTGAAGQIGYALVPMIARGIMLGPDQPVILHMLDIEPAAEALNGVKMELIDAAFPLLKGVVATTDVVE--- 77 (332)
Q Consensus 1 m~~~~~kI~VtGaaG~IGs~l~~~L~~~~~~~~~~~~~i~l~D~~~~~~~~~~~~~dl~~~~~~~~~~v~~~~~~~~--- 77 (332)
|.-+.+.++||||++.||.+++..|++.|. +|++.|++. +.+.....++.........|++...+..+
T Consensus 1 M~L~gK~alITGas~GIG~aia~~la~~Ga-------~V~i~~r~~--~~l~~~~~~~~~~~~~~~~Dv~~~~~~~~~~~ 71 (276)
T d1bdba_ 1 MKLKGEAVLITGGASGLGRALVDRFVAEGA-------KVAVLDKSA--ERLAELETDHGDNVLGIVGDVRSLEDQKQAAS 71 (276)
T ss_dssp CTTTTCEEEEETTTSHHHHHHHHHHHHTTC-------EEEEEESCH--HHHHHHHHHHGGGEEEEECCTTCHHHHHHHHH
T ss_pred CCCCCCEEEEeCCCCHHHHHHHHHHHHCCC-------EEEEEECCH--HHHHHHHHHcCCCeeEEecccccHHHHHHHHH
Confidence 666778999999999999999999999986 899999863 34544444443221222234433332222
Q ss_pred ----HhCCCcEEEEecCCCCCC-------CCC-h---hHHHhhhHHHH----HHHHHHHHhhcCCCcEEEEEeCChhhHH
Q 019990 78 ----ACKDVNIAVMVGGFPRKE-------GME-R---KDVMSKNVSIY----KAQASALEKHAAPNCKVLVVANPANTNA 138 (332)
Q Consensus 78 ----a~~~aDiVi~~ag~~~~~-------~~~-~---~~~~~~N~~~~----~~i~~~i~~~~~~~~~viv~snp~~~~~ 138 (332)
.+...|++|+.||..... .+. . +..++.|+... +.+++.+++.. +.+|+.++....
T Consensus 72 ~~~~~~g~idilvnnAG~~~~~~~~~~~~~e~~~~~~~~~~~vNl~g~~~~~~~~~p~m~~~~---g~iI~i~S~~~~-- 146 (276)
T d1bdba_ 72 RCVARFGKIDTLIPNAGIWDYSTALVDLPEESLDAAFDEVFHINVKGYIHAVKACLPALVASR---GNVIFTISNAGF-- 146 (276)
T ss_dssp HHHHHHSCCCEEECCCCCCCTTCCGGGSCTTTHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHT---CEEEEECCGGGT--
T ss_pred HHHHHhCCcccccccccccCCCCccccccccchhhhhhHHHHHhhHHHHHHHHHHHHHHHhcC---CCceeeeechhc--
Confidence 244789999999863211 111 1 23455665444 45555555442 455555543221
Q ss_pred HHHHHHCCCCCCCcEEEeecccHHHHHHHHHHHcCCCCCCeeeeEEEec
Q 019990 139 LILKEFAPSIPAKNITCLTRLDHNRAMGQISERLKVHVSDVKNVIIWGN 187 (332)
Q Consensus 139 ~~~~~~~~~~~~~~i~~~t~l~~~r~~~~~a~~~~v~~~~v~~~~V~G~ 187 (332)
.+.+....|+.+|-.-..+.+.+|..++ +. ||. +.+.+
T Consensus 147 -------~~~~~~~~Y~asKaal~~ltr~lA~ela--~~-IrV-N~I~P 184 (276)
T d1bdba_ 147 -------YPNGGGPLYTAAKHAIVGLVRELAFELA--PY-VRV-NGVGS 184 (276)
T ss_dssp -------STTSSCHHHHHHHHHHHHHHHHHHHHHT--TT-CEE-EEEEE
T ss_pred -------cCCCCCchHHHHHHHHHHHHHHHHHHhh--cc-eEE-cccCC
Confidence 1223333577788878888888999986 33 774 44555
|
| >d1ulsa_ c.2.1.2 (A:) beta-keto acyl carrier protein reductase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: beta-keto acyl carrier protein reductase species: Thermus thermophilus [TaxId: 274]
Probab=98.39 E-value=1.1e-06 Score=74.83 Aligned_cols=163 Identities=18% Similarity=0.103 Sum_probs=98.1
Q ss_pred CCCCCcEEEEEcCCChhHHHHHHHHHhcccCCCCCCeEEEEEecccchhhhhhhHhhhhhhccCCccceEEeCCHHH---
Q 019990 1 MAKNPLRVLVTGAAGQIGYALVPMIARGIMLGPDQPVILHMLDIEPAAEALNGVKMELIDAAFPLLKGVVATTDVVE--- 77 (332)
Q Consensus 1 m~~~~~kI~VtGaaG~IGs~l~~~L~~~~~~~~~~~~~i~l~D~~~~~~~~~~~~~dl~~~~~~~~~~v~~~~~~~~--- 77 (332)
|+.+.++++||||++-||.+++..|++.|. +|.+.|++. +.++....++.. ..+..|++...++.+
T Consensus 1 M~L~gK~~lITGas~GIG~aia~~l~~~G~-------~V~~~~r~~--~~l~~~~~~~~~--~~~~~Dv~~~~~v~~~~~ 69 (242)
T d1ulsa_ 1 MRLKDKAVLITGAAHGIGRATLELFAKEGA-------RLVACDIEE--GPLREAAEAVGA--HPVVMDVADPASVERGFA 69 (242)
T ss_dssp CTTTTCEEEEESTTSHHHHHHHHHHHHTTC-------EEEEEESCH--HHHHHHHHTTTC--EEEECCTTCHHHHHHHHH
T ss_pred CCCCCCEEEEeCCCCHHHHHHHHHHHHCCC-------EEEEEECCH--HHHHHHHHHcCC--eEEEEecCCHHHHHHHHH
Confidence 777788999999999999999999999886 899999864 334333222221 112234443333322
Q ss_pred ----HhCCCcEEEEecCCCCCC---CCChh---HHHhhhHHHHHHHHHHHHhhc--CCCcEEEEEeCChhhHHHHHHHHC
Q 019990 78 ----ACKDVNIAVMVGGFPRKE---GMERK---DVMSKNVSIYKAQASALEKHA--APNCKVLVVANPANTNALILKEFA 145 (332)
Q Consensus 78 ----a~~~aDiVi~~ag~~~~~---~~~~~---~~~~~N~~~~~~i~~~i~~~~--~~~~~viv~snp~~~~~~~~~~~~ 145 (332)
.+...|++|+.||..... ..+.+ ..++.|+...-.+.+.+.++- .....+++.|. ...
T Consensus 70 ~~~~~~g~iDilVnnAG~~~~~~~~~~~~~~~~~~~~vNl~~~~~~~~~~~~~m~~~~~~~i~~~ss-~~~--------- 139 (242)
T d1ulsa_ 70 EALAHLGRLDGVVHYAGITRDNFHWKMPLEDWELVLRVNLTGSFLVAKAASEAMREKNPGSIVLTAS-RVY--------- 139 (242)
T ss_dssp HHHHHHSSCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHHHHHHHHHHHHHHHHTTTCCEEEEEECC-GGG---------
T ss_pred HHHHhcCCceEEEECCcccccCchhhCcchhhhccccccchhhhhhhhhccccccccccceeeeecc-ccc---------
Confidence 234689999999975321 12322 345667666544444433321 12345555443 211
Q ss_pred CCCCCCcEEEeecccHHHHHHHHHHHcCCCCCCeeeeEEEec
Q 019990 146 PSIPAKNITCLTRLDHNRAMGQISERLKVHVSDVKNVIIWGN 187 (332)
Q Consensus 146 ~~~~~~~i~~~t~l~~~r~~~~~a~~~~v~~~~v~~~~V~G~ 187 (332)
.+.+....|+.+|-.-..+.+.+|..++ +..||. +.+-+
T Consensus 140 ~~~~~~~~Y~asKaal~~ltk~lA~ela--~~gIrV-N~I~P 178 (242)
T d1ulsa_ 140 LGNLGQANYAASMAGVVGLTRTLALELG--RWGIRV-NTLAP 178 (242)
T ss_dssp GCCTTCHHHHHHHHHHHHHHHHHHHHHG--GGTEEE-EEEEE
T ss_pred cCCCCCcchHHHHHHHHHHHHHHHHHHh--hhCcEE-EEEee
Confidence 1233334677788777888888888875 566874 44454
|
| >d1pr9a_ c.2.1.2 (A:) Carbonyl reductase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Carbonyl reductase species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.39 E-value=1.2e-06 Score=74.72 Aligned_cols=164 Identities=15% Similarity=0.120 Sum_probs=99.9
Q ss_pred CCC--CCcEEEEEcCCChhHHHHHHHHHhcccCCCCCCeEEEEEecccchhhhhhhHhhhhhhccCCccceEEeCCHHHH
Q 019990 1 MAK--NPLRVLVTGAAGQIGYALVPMIARGIMLGPDQPVILHMLDIEPAAEALNGVKMELIDAAFPLLKGVVATTDVVEA 78 (332)
Q Consensus 1 m~~--~~~kI~VtGaaG~IGs~l~~~L~~~~~~~~~~~~~i~l~D~~~~~~~~~~~~~dl~~~~~~~~~~v~~~~~~~~a 78 (332)
|.. +.++++||||++.||.+++..|++.|. +|.+.|++. +.++....++.... ....|++...+.++.
T Consensus 1 M~~~L~GK~~lITGas~GIG~aia~~la~~G~-------~V~~~~r~~--~~l~~~~~~~~~~~-~~~~Dv~d~~~v~~~ 70 (244)
T d1pr9a_ 1 MELFLAGRRVLVTGAGKGIGRGTVQALHATGA-------RVVAVSRTQ--ADLDSLVRECPGIE-PVCVDLGDWEATERA 70 (244)
T ss_dssp CCCCCTTCEEEEESTTSHHHHHHHHHHHHTTC-------EEEEEESCH--HHHHHHHHHSTTCE-EEECCTTCHHHHHHH
T ss_pred CCCCCCCCEEEEeCCCCHHHHHHHHHHHHcCC-------EEEEEECCH--HHHHHHHHhcCCCe-EEEEeCCCHHHHHHH
Confidence 543 568999999999999999999999886 899999864 34443333333211 122344433334333
Q ss_pred ---hCCCcEEEEecCCCCCC---CCChh---HHHhhhHHHH----HHHHHHHHhhcCCCcEEEEEeCChhhHHHHHHHHC
Q 019990 79 ---CKDVNIAVMVGGFPRKE---GMERK---DVMSKNVSIY----KAQASALEKHAAPNCKVLVVANPANTNALILKEFA 145 (332)
Q Consensus 79 ---~~~aDiVi~~ag~~~~~---~~~~~---~~~~~N~~~~----~~i~~~i~~~~~~~~~viv~snp~~~~~~~~~~~~ 145 (332)
+...|++|+.||..... ..+.+ ..++.|+... +.+++.+.+.. ..+.++++++-...
T Consensus 71 ~~~~g~iDilVnnAg~~~~~~~~~~~~~~~~~~~~vnl~~~~~~~~~~~~~~~~~~-~~g~Ii~isS~~~~--------- 140 (244)
T d1pr9a_ 71 LGSVGPVDLLVNNAAVALLQPFLEVTKEAFDRSFEVNLRAVIQVSQIVARGLIARG-VPGAIVNVSSQCSQ--------- 140 (244)
T ss_dssp HTTCCCCCEEEECCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHT-CCEEEEEECCGGGT---------
T ss_pred HHHhCCceEEEeccccccccchhhhhHHHHHHHHHHhhhhhhHHHHHhhhHHHHhC-CcceEeeccccccc---------
Confidence 44689999999875321 12222 2455665544 44444443332 34677777753221
Q ss_pred CCCCCCcEEEeecccHHHHHHHHHHHcCCCCCCeeeeEEEec
Q 019990 146 PSIPAKNITCLTRLDHNRAMGQISERLKVHVSDVKNVIIWGN 187 (332)
Q Consensus 146 ~~~~~~~i~~~t~l~~~r~~~~~a~~~~v~~~~v~~~~V~G~ 187 (332)
.+.|..-.|+.+|-.-..+.+.+|..++ +..||. +.+-+
T Consensus 141 ~~~~~~~~Y~asKaal~~lt~~lA~el~--~~gIrv-N~I~P 179 (244)
T d1pr9a_ 141 RAVTNHSVYCSTKGALDMLTKVMALELG--PHKIRV-NAVNP 179 (244)
T ss_dssp SCCTTBHHHHHHHHHHHHHHHHHHHHHG--GGTEEE-EEEEE
T ss_pred ccccchhhhhhhHHHHHHHHHHHHHHhC--CCcEEE-EEEee
Confidence 2233333577778778888888888876 567874 44444
|
| >d1fmca_ c.2.1.2 (A:) 7-alpha-hydroxysteroid dehydrogenase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 7-alpha-hydroxysteroid dehydrogenase species: Escherichia coli [TaxId: 562]
Probab=98.35 E-value=1.1e-06 Score=75.39 Aligned_cols=161 Identities=17% Similarity=0.140 Sum_probs=99.4
Q ss_pred CCcEEEEEcCCChhHHHHHHHHHhcccCCCCCCeEEEEEecccchhhhhhhHhhhhhhc---cCCccceEEeCCHHH---
Q 019990 4 NPLRVLVTGAAGQIGYALVPMIARGIMLGPDQPVILHMLDIEPAAEALNGVKMELIDAA---FPLLKGVVATTDVVE--- 77 (332)
Q Consensus 4 ~~~kI~VtGaaG~IGs~l~~~L~~~~~~~~~~~~~i~l~D~~~~~~~~~~~~~dl~~~~---~~~~~~v~~~~~~~~--- 77 (332)
+.+.++||||++.||.+++..|++.|. +|++.|++. +.++....++.... ..+..|++...+..+
T Consensus 10 ~gK~alITGas~GIG~aia~~la~~Ga-------~V~~~~r~~--~~~~~~~~~l~~~g~~~~~~~~Dvs~~~~~~~~~~ 80 (255)
T d1fmca_ 10 DGKCAIITGAGAGIGKEIAITFATAGA-------SVVVSDINA--DAANHVVDEIQQLGGQAFACRCDITSEQELSALAD 80 (255)
T ss_dssp TTCEEEETTTTSHHHHHHHHHHHTTTC-------EEEEEESCH--HHHHHHHHHHHHTTCCEEEEECCTTCHHHHHHHHH
T ss_pred CCCEEEEeCCCcHHHHHHHHHHHHCCC-------EEEEEECCH--HHHHHHHHHHHHcCCcEEEEEccCCCHHHHHHHHH
Confidence 457899999999999999999999886 899999854 34554444554321 112234443333222
Q ss_pred ----HhCCCcEEEEecCCCCC--CCCChhH---HHhhhHHHH----HHHHHHHHhhcCCCcEEEEEeCChhhHHHHHHHH
Q 019990 78 ----ACKDVNIAVMVGGFPRK--EGMERKD---VMSKNVSIY----KAQASALEKHAAPNCKVLVVANPANTNALILKEF 144 (332)
Q Consensus 78 ----a~~~aDiVi~~ag~~~~--~~~~~~~---~~~~N~~~~----~~i~~~i~~~~~~~~~viv~snp~~~~~~~~~~~ 144 (332)
.+-..|++|+.||.... .+.+.++ .++.|+... +.+++.+.+.. ...+|++++-...
T Consensus 81 ~~~~~~g~iDilvnnAG~~~~~~~e~~~e~~~~~~~vNl~~~~~~~~~~~~~m~~~~--~g~Ii~isS~~~~-------- 150 (255)
T d1fmca_ 81 FAISKLGKVDILVNNAGGGGPKPFDMPMADFRRAYELNVFSFFHLSQLVAPEMEKNG--GGVILTITSMAAE-------- 150 (255)
T ss_dssp HHHHHHSSCCEEEECCCCCCCCCTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHT--CEEEEEECCGGGT--------
T ss_pred HHHHHcCCCCEeeeCCcCCCCCcccCCHHHHHHHHHHHHHHhhhhHHHHHhhhcccc--ccccccccccchh--------
Confidence 23478999999987432 1233333 355665444 45555666553 4566666653221
Q ss_pred CCCCCCCcEEEeecccHHHHHHHHHHHcCCCCCCeeeeEEEec
Q 019990 145 APSIPAKNITCLTRLDHNRAMGQISERLKVHVSDVKNVIIWGN 187 (332)
Q Consensus 145 ~~~~~~~~i~~~t~l~~~r~~~~~a~~~~v~~~~v~~~~V~G~ 187 (332)
.+.+..-.|+.+|-.-..+.+.+|+.++ +..||. +.+-+
T Consensus 151 -~~~~~~~~Y~asKaal~~lt~~lA~el~--~~gIrV-N~I~P 189 (255)
T d1fmca_ 151 -NKNINMTSYASSKAAASHLVRNMAFDLG--EKNIRV-NGIAP 189 (255)
T ss_dssp -CCCTTCHHHHHHHHHHHHHHHHHHHHHH--TTTEEE-EEEEE
T ss_pred -ccccccccchhHHHHHHHHHHHHHHHhC--ccCeEE-EEeee
Confidence 2233333577788888888888888875 566774 44443
|
| >d1q7ba_ c.2.1.2 (A:) beta-keto acyl carrier protein reductase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: beta-keto acyl carrier protein reductase species: Escherichia coli [TaxId: 562]
Probab=98.35 E-value=5.4e-07 Score=76.90 Aligned_cols=161 Identities=16% Similarity=0.150 Sum_probs=99.4
Q ss_pred CCcEEEEEcCCChhHHHHHHHHHhcccCCCCCCeEEEEEecccchhhhhhhHhhhhhhccCCccceEEeCCHHHH-----
Q 019990 4 NPLRVLVTGAAGQIGYALVPMIARGIMLGPDQPVILHMLDIEPAAEALNGVKMELIDAAFPLLKGVVATTDVVEA----- 78 (332)
Q Consensus 4 ~~~kI~VtGaaG~IGs~l~~~L~~~~~~~~~~~~~i~l~D~~~~~~~~~~~~~dl~~~~~~~~~~v~~~~~~~~a----- 78 (332)
+.+.++||||++.||.+++..|++.|. +|++.|++. +.++....++......+..|++...+..+.
T Consensus 3 ~gK~alITGas~GIG~a~a~~l~~~G~-------~Vv~~~r~~--~~l~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~ 73 (243)
T d1q7ba_ 3 EGKIALVTGASRGIGRAIAETLAARGA-------KVIGTATSE--NGAQAISDYLGANGKGLMLNVTDPASIESVLEKIR 73 (243)
T ss_dssp TTCEEEESSCSSHHHHHHHHHHHHTTC-------EEEEEESSH--HHHHHHHHHHGGGEEEEECCTTCHHHHHHHHHHHH
T ss_pred CCCEEEEeCCCCHHHHHHHHHHHHcCC-------EEEEEeCCH--HHHHHHHHHhCCCCcEEEEEecCHHHhhhhhhhhh
Confidence 456789999999999999999999886 899999864 345444444432111222344433332222
Q ss_pred --hCCCcEEEEecCCCCCC---CCChh---HHHhhhHHHH----HHHHHHHHhhcCCCcEEEEEeCChhhHHHHHHHHCC
Q 019990 79 --CKDVNIAVMVGGFPRKE---GMERK---DVMSKNVSIY----KAQASALEKHAAPNCKVLVVANPANTNALILKEFAP 146 (332)
Q Consensus 79 --~~~aDiVi~~ag~~~~~---~~~~~---~~~~~N~~~~----~~i~~~i~~~~~~~~~viv~snp~~~~~~~~~~~~~ 146 (332)
+-..|++|+.||..... ..+.+ ..+..|+... +.+++.+.+. ..+.+|++|+.... .
T Consensus 74 ~~~g~iDilVnnAg~~~~~~~~~~~~~~~~~~~~vNl~~~~~~~~~~~~~m~~~--~~G~II~isS~~~~---------~ 142 (243)
T d1q7ba_ 74 AEFGEVDILVNNAGITRDNLLMRMKDEEWNDIIETNLSSVFRLSKAVMRAMMKK--RHGRIITIGSVVGT---------M 142 (243)
T ss_dssp HHTCSCSEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHH--TCEEEEEECCHHHH---------H
T ss_pred cccCCcceehhhhhhccccccccccccccccccceeechhhhhHHHHHHHHHHc--CCCEeeeecchhhc---------C
Confidence 34689999999874322 12222 2456666544 4555555554 35677888763221 1
Q ss_pred CCCCCcEEEeecccHHHHHHHHHHHcCCCCCCeeeeEEEec
Q 019990 147 SIPAKNITCLTRLDHNRAMGQISERLKVHVSDVKNVIIWGN 187 (332)
Q Consensus 147 ~~~~~~i~~~t~l~~~r~~~~~a~~~~v~~~~v~~~~V~G~ 187 (332)
+.+..-.|+.+|-.-..+.+.+|..++ +..||. +.+-+
T Consensus 143 ~~~~~~~Y~asKaal~~lt~~lA~ela--~~gIrV-N~I~P 180 (243)
T d1q7ba_ 143 GNGGQANYAAAKAGLIGFSKSLAREVA--SRGITV-NVVAP 180 (243)
T ss_dssp CCTTCHHHHHHHHHHHHHHHHHHHHHG--GGTEEE-EEEEE
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHhC--ccCeEE-EEEec
Confidence 233333678888888888888888876 566774 44444
|
| >d1gega_ c.2.1.2 (A:) meso-2,3-butanediol dehydrogenase {Klebsiella pneumoniae [TaxId: 573]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: meso-2,3-butanediol dehydrogenase species: Klebsiella pneumoniae [TaxId: 573]
Probab=98.35 E-value=1.1e-06 Score=75.38 Aligned_cols=160 Identities=16% Similarity=0.151 Sum_probs=97.3
Q ss_pred cEE-EEEcCCChhHHHHHHHHHhcccCCCCCCeEEEEEecccchhhhhhhHhhhhhhcc---CCccceEEeCCHHH----
Q 019990 6 LRV-LVTGAAGQIGYALVPMIARGIMLGPDQPVILHMLDIEPAAEALNGVKMELIDAAF---PLLKGVVATTDVVE---- 77 (332)
Q Consensus 6 ~kI-~VtGaaG~IGs~l~~~L~~~~~~~~~~~~~i~l~D~~~~~~~~~~~~~dl~~~~~---~~~~~v~~~~~~~~---- 77 (332)
+|| +||||++-||.+++..|++.|. .|.+.|++. +.++....++.+... .+..|++...++.+
T Consensus 1 KKValITGas~GIG~aia~~la~~Ga-------~V~~~~r~~--~~l~~~~~~i~~~g~~~~~~~~Dv~~~~~v~~~~~~ 71 (255)
T d1gega_ 1 KKVALVTGAGQGIGKAIALRLVKDGF-------AVAIADYND--ATAKAVASEINQAGGHAVAVKVDVSDRDQVFAAVEQ 71 (255)
T ss_dssp CCEEEEETTTSHHHHHHHHHHHHTTC-------EEEEEESCH--HHHHHHHHHHHHTTCCEEEEECCTTSHHHHHHHHHH
T ss_pred CCEEEEcCCccHHHHHHHHHHHHCCC-------EEEEEECCH--HHHHHHHHHHHhcCCcEEEEEeeCCCHHHHHHHHHH
Confidence 465 8999999999999999999886 899999864 455555555543211 12234443333222
Q ss_pred ---HhCCCcEEEEecCCCCCC---CCChh---HHHhhhHHHHHHH----HHHHHhhcCCCcEEEEEeCChhhHHHHHHHH
Q 019990 78 ---ACKDVNIAVMVGGFPRKE---GMERK---DVMSKNVSIYKAQ----ASALEKHAAPNCKVLVVANPANTNALILKEF 144 (332)
Q Consensus 78 ---a~~~aDiVi~~ag~~~~~---~~~~~---~~~~~N~~~~~~i----~~~i~~~~~~~~~viv~snp~~~~~~~~~~~ 144 (332)
.+-..|++|+.||..... ..+.+ ..++.|+.....+ ++.+.+.+ ....++++|+....
T Consensus 72 ~~~~~g~iDilVnnAG~~~~~~~~~~~~~~~~~~~~vNl~g~~~~~~~~~~~m~~~~-~~g~Iv~isS~~~~-------- 142 (255)
T d1gega_ 72 ARKTLGGFDVIVNNAGVAPSTPIESITPEIVDKVYNINVKGVIWGIQAAVEAFKKEG-HGGKIINACSQAGH-------- 142 (255)
T ss_dssp HHHHTTCCCEEEECCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHT-SCEEEEEECCGGGT--------
T ss_pred HHHHhCCccEEEecccccccCcHHHhhhhhhhhhhhhcccchhhhhhhhcchhhhhc-cccccccccchhhc--------
Confidence 234789999999874321 12332 3456676555444 44445543 34566666653221
Q ss_pred CCCCCCCcEEEeecccHHHHHHHHHHHcCCCCCCeeeeEEEec
Q 019990 145 APSIPAKNITCLTRLDHNRAMGQISERLKVHVSDVKNVIIWGN 187 (332)
Q Consensus 145 ~~~~~~~~i~~~t~l~~~r~~~~~a~~~~v~~~~v~~~~V~G~ 187 (332)
.+.|..-.|+.+|-.-..+.+.+|..++ +..||. +.+-+
T Consensus 143 -~~~~~~~~Y~asKaal~~ltk~lA~el~--~~gIrV-N~I~P 181 (255)
T d1gega_ 143 -VGNPELAVYSSSKFAVRGLTQTAARDLA--PLGITV-NGYCP 181 (255)
T ss_dssp -SCCTTBHHHHHHHHHHHHHHHHHHHHHG--GGTEEE-EEEEE
T ss_pred -ccCcccccchhCHHHHHhhHHHHHHHhh--hhCcEE-EEEec
Confidence 1233333567778777888888888876 566774 44454
|
| >d1hdca_ c.2.1.2 (A:) 3-alpha,20-beta-hydroxysteroid dehydrogenase {Streptomyces hydrogenans [TaxId: 1905]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 3-alpha,20-beta-hydroxysteroid dehydrogenase species: Streptomyces hydrogenans [TaxId: 1905]
Probab=98.34 E-value=8.2e-07 Score=76.29 Aligned_cols=161 Identities=14% Similarity=0.051 Sum_probs=99.3
Q ss_pred CCcEEEEEcCCChhHHHHHHHHHhcccCCCCCCeEEEEEecccchhhhhhhHhhhhhhccCCccceEEeCCHHH------
Q 019990 4 NPLRVLVTGAAGQIGYALVPMIARGIMLGPDQPVILHMLDIEPAAEALNGVKMELIDAAFPLLKGVVATTDVVE------ 77 (332)
Q Consensus 4 ~~~kI~VtGaaG~IGs~l~~~L~~~~~~~~~~~~~i~l~D~~~~~~~~~~~~~dl~~~~~~~~~~v~~~~~~~~------ 77 (332)
+.++++||||++-||.+++..|++.|. +|++.|++. +.+.....++......+..|++...+..+
T Consensus 4 ~gK~alVTGas~GIG~aia~~la~~Ga-------~V~~~~r~~--~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~ 74 (254)
T d1hdca_ 4 SGKTVIITGGARGLGAEAARQAVAAGA-------RVVLADVLD--EEGAATARELGDAARYQHLDVTIEEDWQRVVAYAR 74 (254)
T ss_dssp CCSEEEEETTTSHHHHHHHHHHHHTTC-------EEEEEESCH--HHHHHHHHTTGGGEEEEECCTTCHHHHHHHHHHHH
T ss_pred CCCEEEEeCcCCHHHHHHHHHHHHCCC-------EEEEEECCH--HHHHHHHHHhCCceEEEEcccCCHHHHHHHHHHHH
Confidence 457899999999999999999999886 899999864 34444444443221122234443333322
Q ss_pred -HhCCCcEEEEecCCCCCC---CCChh---HHHhhhHHHH----HHHHHHHHhhcCCCcEEEEEeCChhhHHHHHHHHCC
Q 019990 78 -ACKDVNIAVMVGGFPRKE---GMERK---DVMSKNVSIY----KAQASALEKHAAPNCKVLVVANPANTNALILKEFAP 146 (332)
Q Consensus 78 -a~~~aDiVi~~ag~~~~~---~~~~~---~~~~~N~~~~----~~i~~~i~~~~~~~~~viv~snp~~~~~~~~~~~~~ 146 (332)
.+-..|++|+.||..... ..+.+ ..++.|+... +.+++.+++. ..+.+|++|+.... .
T Consensus 75 ~~~g~iDilVnnAg~~~~~~~~~~~~~~~~~~~~vN~~~~~~~~~~~~p~m~~~--~~G~II~isS~~~~---------~ 143 (254)
T d1hdca_ 75 EEFGSVDGLVNNAGISTGMFLETESVERFRKVVEINLTGVFIGMKTVIPAMKDA--GGGSIVNISSAAGL---------M 143 (254)
T ss_dssp HHHSCCCEEEECCCCCCCSCGGGSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHH--TCEEEEEECCGGGT---------S
T ss_pred HHcCCccEEEecCccccccccccccccccchhhhHHhhHHHHHHHHHHHHHhhc--CCCeecccccchhc---------c
Confidence 234789999999874321 12222 3456666544 4445555554 35677888764321 2
Q ss_pred CCCCCcEEEeecccHHHHHHHHHHHcCCCCCCeeeeEEEec
Q 019990 147 SIPAKNITCLTRLDHNRAMGQISERLKVHVSDVKNVIIWGN 187 (332)
Q Consensus 147 ~~~~~~i~~~t~l~~~r~~~~~a~~~~v~~~~v~~~~V~G~ 187 (332)
+.+....|+.+|-.-..+.+.+|..++ +..||. +.+-+
T Consensus 144 ~~~~~~~Y~asKaal~~lt~~lA~e~a--~~gIrV-N~I~P 181 (254)
T d1hdca_ 144 GLALTSSYGASKWGVRGLSKLAAVELG--TDRIRV-NSVHP 181 (254)
T ss_dssp CCTTCHHHHHHHHHHHHHHHHHHHHHG--GGTEEE-EEEEE
T ss_pred cccchhhHHHHHHHHHHHHHHHHHHhC--CCceEE-EEeee
Confidence 233333677788888888888888765 456774 44444
|
| >d1hxha_ c.2.1.2 (A:) 3beta/17beta hydroxysteroid dehydrogenase {Comamonas testosteroni [TaxId: 285]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 3beta/17beta hydroxysteroid dehydrogenase species: Comamonas testosteroni [TaxId: 285]
Probab=98.29 E-value=1e-06 Score=75.54 Aligned_cols=162 Identities=13% Similarity=0.068 Sum_probs=96.0
Q ss_pred CCcEEEEEcCCChhHHHHHHHHHhcccCCCCCCeEEEEEecccchhhhhhhHhhhhhhccCCccceEEeCCHHH------
Q 019990 4 NPLRVLVTGAAGQIGYALVPMIARGIMLGPDQPVILHMLDIEPAAEALNGVKMELIDAAFPLLKGVVATTDVVE------ 77 (332)
Q Consensus 4 ~~~kI~VtGaaG~IGs~l~~~L~~~~~~~~~~~~~i~l~D~~~~~~~~~~~~~dl~~~~~~~~~~v~~~~~~~~------ 77 (332)
+.+.++||||++.||.+++..|++.|. +|.+.|++. +.++....++......+..|++...+..+
T Consensus 5 ~gK~alITGas~GIG~aia~~la~~Ga-------~V~~~~~~~--~~~~~~~~~~~~~~~~~~~Dv~~~~~~~~~~~~~~ 75 (253)
T d1hxha_ 5 QGKVALVTGGASGVGLEVVKLLLGEGA-------KVAFSDINE--AAGQQLAAELGERSMFVRHDVSSEADWTLVMAAVQ 75 (253)
T ss_dssp TTCEEEETTTTSHHHHHHHHHHHHTTC-------EEEEECSCH--HHHHHHHHHHCTTEEEECCCTTCHHHHHHHHHHHH
T ss_pred CCCEEEEeCCCCHHHHHHHHHHHHCCC-------EEEEEECCH--HHHHHHHHHhCCCeEEEEeecCCHHHHHHHHHHHH
Confidence 356899999999999999999999886 899999864 34544444443322222234433322222
Q ss_pred -HhCCCcEEEEecCCCCCC---CCChh---HHHhhhHHHH----HHHHHHHHhhcCCCcEEEEEeCChhhHHHHHHHHCC
Q 019990 78 -ACKDVNIAVMVGGFPRKE---GMERK---DVMSKNVSIY----KAQASALEKHAAPNCKVLVVANPANTNALILKEFAP 146 (332)
Q Consensus 78 -a~~~aDiVi~~ag~~~~~---~~~~~---~~~~~N~~~~----~~i~~~i~~~~~~~~~viv~snp~~~~~~~~~~~~~ 146 (332)
.+-..|++|+.||..... ..+.+ ..++.|+... +..++.+++ ..+.+|++++.... .
T Consensus 76 ~~~g~iDilVnnAG~~~~~~~~~~~~~~~~~~~~vNl~~~~~~~~~~~~~m~~---~~G~Iv~isS~~~~---------~ 143 (253)
T d1hxha_ 76 RRLGTLNVLVNNAGILLPGDMETGRLEDFSRLLKINTESVFIGCQQGIAAMKE---TGGSIINMASVSSW---------L 143 (253)
T ss_dssp HHHCSCCEEEECCCCCCCBCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHTT---TCEEEEEECCGGGT---------S
T ss_pred HHhCCCCeEEecccccCCCCcccCCHHHHHHHHHHhhhHHHHHHHHHHHHHHh---cCCceecccchhhh---------c
Confidence 234689999999974321 22332 2455665544 444444433 24677877764321 1
Q ss_pred CCCCCcEEEeecccHHHHHHHHHHHcCCCCCCeeeeEEEec
Q 019990 147 SIPAKNITCLTRLDHNRAMGQISERLKVHVSDVKNVIIWGN 187 (332)
Q Consensus 147 ~~~~~~i~~~t~l~~~r~~~~~a~~~~v~~~~v~~~~V~G~ 187 (332)
+.+....|+.+|-.-..+.+.+|..++-+...||. +.+-+
T Consensus 144 ~~~~~~~Y~asKaal~~lt~~lA~e~~~~g~~IrV-N~I~P 183 (253)
T d1hxha_ 144 PIEQYAGYSASKAAVSALTRAAALSCRKQGYAIRV-NSIHP 183 (253)
T ss_dssp CCTTBHHHHHHHHHHHHHHHHHHHHHHHHTCCEEE-EEEEE
T ss_pred CccccccccchhHHHHHHHHHHHHHHhhcCCCEEE-EEEeE
Confidence 23333357777777777777777776543344663 33343
|
| >d2a4ka1 c.2.1.2 (A:2-242) beta-keto acyl carrier protein reductase {Thermus thermophilus, TTHB020 [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: beta-keto acyl carrier protein reductase species: Thermus thermophilus, TTHB020 [TaxId: 274]
Probab=98.27 E-value=5.5e-06 Score=70.31 Aligned_cols=157 Identities=18% Similarity=0.121 Sum_probs=96.5
Q ss_pred CCcEEEEEcCCChhHHHHHHHHHhcccCCCCCCeEEEEEecccchhhhhhhHhhhhhhccCCccceEEeCCHHH------
Q 019990 4 NPLRVLVTGAAGQIGYALVPMIARGIMLGPDQPVILHMLDIEPAAEALNGVKMELIDAAFPLLKGVVATTDVVE------ 77 (332)
Q Consensus 4 ~~~kI~VtGaaG~IGs~l~~~L~~~~~~~~~~~~~i~l~D~~~~~~~~~~~~~dl~~~~~~~~~~v~~~~~~~~------ 77 (332)
+.++++||||++.||..++..|++.|. +|.+.+++. +.+.....++..-...+..|++...++++
T Consensus 4 ~gK~alItGas~GIG~aia~~l~~~G~-------~V~~~~r~~--~~~~~~~~~~~~~~~~~~~Dls~~~~i~~~~~~i~ 74 (241)
T d2a4ka1 4 SGKTILVTGAASGIGRAALDLFAREGA-------SLVAVDREE--RLLAEAVAALEAEAIAVVADVSDPKAVEAVFAEAL 74 (241)
T ss_dssp TTCEEEEESTTSHHHHHHHHHHHHTTC-------EEEEEESCH--HHHHHHHHTCCSSEEEEECCTTSHHHHHHHHHHHH
T ss_pred CCCEEEEeCCCCHHHHHHHHHHHHCCC-------EEEEEECCH--HHHHHHHHHcCCceEEEEecCCCHHHHHHHHHHHH
Confidence 357899999999999999999999986 899999864 34443333332211112234443333322
Q ss_pred -HhCCCcEEEEecCCCCC-C--CCChh---HHHhhhHHHHHHHHHHHHhhcCCCcEEEEEeCChhhHHHHHHHHCCCCCC
Q 019990 78 -ACKDVNIAVMVGGFPRK-E--GMERK---DVMSKNVSIYKAQASALEKHAAPNCKVLVVANPANTNALILKEFAPSIPA 150 (332)
Q Consensus 78 -a~~~aDiVi~~ag~~~~-~--~~~~~---~~~~~N~~~~~~i~~~i~~~~~~~~~viv~snp~~~~~~~~~~~~~~~~~ 150 (332)
.+...|++|+.||.... + ..+.+ ..++.|+.....+.+.+..+......+++.|+...... |.
T Consensus 75 ~~~g~iDiLinnAg~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~k~~~~~~~~~~~i~~~ss~a~~~~----------~~ 144 (241)
T d2a4ka1 75 EEFGRLHGVAHFAGVAHSALSWNLPLEAWEKVLRVNLTGSFLVARKAGEVLEEGGSLVLTGSVAGLGA----------FG 144 (241)
T ss_dssp HHHSCCCEEEEGGGGTTTTC----CHHHHHHHHHHHHHHHHHHHHHHHHHCCTTCEEEEECCCTTCCH----------HH
T ss_pred HHhCCccEeccccccccccchhhhhccccccccccccccccccccccccccccccceeeccccccccc----------cC
Confidence 23468999999876432 1 22322 34567877777777777666533444555554321111 11
Q ss_pred CcEEEeecccHHHHHHHHHHHcCCCCCCeee
Q 019990 151 KNITCLTRLDHNRAMGQISERLKVHVSDVKN 181 (332)
Q Consensus 151 ~~i~~~t~l~~~r~~~~~a~~~~v~~~~v~~ 181 (332)
...|+.++-....+.+.+|+.++ +..||.
T Consensus 145 ~~~Y~~sK~al~~lt~~lA~el~--~~gIrv 173 (241)
T d2a4ka1 145 LAHYAAGKLGVVGLARTLALELA--RKGVRV 173 (241)
T ss_dssp HHHHHHCSSHHHHHHHHHHHHHT--TTTCEE
T ss_pred ccccchhhHHHHHHHHHHHHHHh--HhCCEE
Confidence 12457788888999999999987 445663
|
| >d2ew8a1 c.2.1.2 (A:3-249) (s)-1-phenylethanol dehydrogenase {Azoarcus sp. ebn1 [TaxId: 76114]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: (s)-1-phenylethanol dehydrogenase species: Azoarcus sp. ebn1 [TaxId: 76114]
Probab=98.24 E-value=2.5e-06 Score=72.79 Aligned_cols=162 Identities=15% Similarity=0.091 Sum_probs=97.0
Q ss_pred CCcEEEEEcCCChhHHHHHHHHHhcccCCCCCCeEEEEEecccchhhhhhhHhhhhhhccCCccceEEeCCHHHH-----
Q 019990 4 NPLRVLVTGAAGQIGYALVPMIARGIMLGPDQPVILHMLDIEPAAEALNGVKMELIDAAFPLLKGVVATTDVVEA----- 78 (332)
Q Consensus 4 ~~~kI~VtGaaG~IGs~l~~~L~~~~~~~~~~~~~i~l~D~~~~~~~~~~~~~dl~~~~~~~~~~v~~~~~~~~a----- 78 (332)
+.+.++||||++-||.+++..|++.|. +|.+.|++..+ .......++......+..|++...+..+.
T Consensus 4 ~gKvalVTGas~GIG~aia~~la~~Ga-------~V~~~~~~~~~-~~~~~~~~~g~~~~~~~~Dvs~~~~v~~~~~~~~ 75 (247)
T d2ew8a1 4 KDKLAVITGGANGIGRAIAERFAVEGA-------DIAIADLVPAP-EAEAAIRNLGRRVLTVKCDVSQPGDVEAFGKQVI 75 (247)
T ss_dssp TTCEEEEETTTSHHHHHHHHHHHHTTC-------EEEEEESSCCH-HHHHHHHHTTCCEEEEECCTTCHHHHHHHHHHHH
T ss_pred CCCEEEEeCCCCHHHHHHHHHHHHCCC-------EEEEEECCchH-HHHHHHHHcCCcEEEEEeeCCCHHHHHHHHHHHH
Confidence 356789999999999999999999886 89999986532 22211111111111122355443333322
Q ss_pred --hCCCcEEEEecCCCCCC---CCChh---HHHhhhHHHH----HHHHHHHHhhcCCCcEEEEEeCChhhHHHHHHHHCC
Q 019990 79 --CKDVNIAVMVGGFPRKE---GMERK---DVMSKNVSIY----KAQASALEKHAAPNCKVLVVANPANTNALILKEFAP 146 (332)
Q Consensus 79 --~~~aDiVi~~ag~~~~~---~~~~~---~~~~~N~~~~----~~i~~~i~~~~~~~~~viv~snp~~~~~~~~~~~~~ 146 (332)
+-..|++|+.||..... ..+.+ ..++.|+... +.+++.+++.. .+.+|++|+.... .
T Consensus 76 ~~~G~iDilVnnAG~~~~~~~~~~~~e~~~~~~~vNl~~~~~~~~~~~~~m~~~~--~G~Iv~isS~~~~---------~ 144 (247)
T d2ew8a1 76 STFGRCDILVNNAGIYPLIPFDELTFEQWKKTFEINVDSGFLMAKAFVPGMKRNG--WGRIINLTSTTYW---------L 144 (247)
T ss_dssp HHHSCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHT--CEEEEEECCGGGG---------S
T ss_pred HHcCCCCEEEECCCCCCCCChHhCCHHHhhhhheeehhhhhHHHHHHHhHHHhcC--CCCccccccchhc---------c
Confidence 34789999999974321 12222 2455665444 55555666553 4677777754321 1
Q ss_pred CCCCCcEEEeecccHHHHHHHHHHHcCCCCCCeeeeEEEec
Q 019990 147 SIPAKNITCLTRLDHNRAMGQISERLKVHVSDVKNVIIWGN 187 (332)
Q Consensus 147 ~~~~~~i~~~t~l~~~r~~~~~a~~~~v~~~~v~~~~V~G~ 187 (332)
+.+....|+.+|-.-..+.+.+|..++ +..||. +.+-+
T Consensus 145 ~~~~~~~Y~asKaal~~ltk~lA~ela--~~gIrV-N~I~P 182 (247)
T d2ew8a1 145 KIEAYTHYISTKAANIGFTRALASDLG--KDGITV-NAIAP 182 (247)
T ss_dssp CCSSCHHHHHHHHHHHHHHHHHHHHHG--GGTEEE-EEEEE
T ss_pred cCcccccchhhhccHHHHHHHHHHHhc--ccCeEE-EEEee
Confidence 233333577788777788888888875 566774 44454
|
| >d1x1ta1 c.2.1.2 (A:1-260) D(-)-3-hydroxybutyrate dehydrogenase {Pseudomonas fragi [TaxId: 296]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: D(-)-3-hydroxybutyrate dehydrogenase species: Pseudomonas fragi [TaxId: 296]
Probab=98.24 E-value=4.2e-06 Score=71.92 Aligned_cols=162 Identities=12% Similarity=0.079 Sum_probs=99.6
Q ss_pred CCcEEEEEcCCChhHHHHHHHHHhcccCCCCCCeEEEEEecccchhhhhhhHhhhhhh---c-cCCccceEEeCCHHHH-
Q 019990 4 NPLRVLVTGAAGQIGYALVPMIARGIMLGPDQPVILHMLDIEPAAEALNGVKMELIDA---A-FPLLKGVVATTDVVEA- 78 (332)
Q Consensus 4 ~~~kI~VtGaaG~IGs~l~~~L~~~~~~~~~~~~~i~l~D~~~~~~~~~~~~~dl~~~---~-~~~~~~v~~~~~~~~a- 78 (332)
+.+.++||||++-||.+++..|++.|. +|++.|++.. +.++....++... . ..+..|++...++.+.
T Consensus 3 ~gK~alITGas~GIG~aiA~~la~~Ga-------~V~~~~r~~~-~~~~~~~~~~~~~~g~~~~~~~~Dv~~~~~v~~~~ 74 (260)
T d1x1ta1 3 KGKVAVVTGSTSGIGLGIATALAAQGA-------DIVLNGFGDA-AEIEKVRAGLAAQHGVKVLYDGADLSKGEAVRGLV 74 (260)
T ss_dssp TTCEEEETTCSSHHHHHHHHHHHHTTC-------EEEEECCSCH-HHHHHHHHHHHHHHTSCEEEECCCTTSHHHHHHHH
T ss_pred CcCEEEEeCCCCHHHHHHHHHHHHCCC-------EEEEEeCCcH-HHHHHHHHHHHHhcCCcEEEEECCCCCHHHHHHHH
Confidence 456789999999999999999999886 8999998642 2333333333221 1 1123455443333332
Q ss_pred ------hCCCcEEEEecCCCCCC---CCChh---HHHhhhHHHH----HHHHHHHHhhcCCCcEEEEEeCChhhHHHHHH
Q 019990 79 ------CKDVNIAVMVGGFPRKE---GMERK---DVMSKNVSIY----KAQASALEKHAAPNCKVLVVANPANTNALILK 142 (332)
Q Consensus 79 ------~~~aDiVi~~ag~~~~~---~~~~~---~~~~~N~~~~----~~i~~~i~~~~~~~~~viv~snp~~~~~~~~~ 142 (332)
+-..|++|+.||..... ..+.+ ..+..|+... +..++.+++.. .+++|++++....
T Consensus 75 ~~~~~~~G~iDiLVnnAG~~~~~~~~~~~~~~~~~~~~vNl~g~~~~~~~~~~~m~~~~--~G~Iv~isS~~~~------ 146 (260)
T d1x1ta1 75 DNAVRQMGRIDILVNNAGIQHTALIEDFPTEKWDAILALNLSAVFHGTAAALPHMKKQG--FGRIINIASAHGL------ 146 (260)
T ss_dssp HHHHHHHSCCSEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHT--CEEEEEECCGGGT------
T ss_pred HHHHHHhCCCcEEEeecccccCCchhhhhHHhhhhhhhccccccccccchhhhhHhhcC--CceEeecccccce------
Confidence 34689999999975322 12222 2455665444 55566666543 5677877764321
Q ss_pred HHCCCCCCCcEEEeecccHHHHHHHHHHHcCCCCCCeeeeEEEec
Q 019990 143 EFAPSIPAKNITCLTRLDHNRAMGQISERLKVHVSDVKNVIIWGN 187 (332)
Q Consensus 143 ~~~~~~~~~~i~~~t~l~~~r~~~~~a~~~~v~~~~v~~~~V~G~ 187 (332)
.+.|..-.|+.+|-.-..+.+.+|..++ +..||. +.+-+
T Consensus 147 ---~~~~~~~~Y~asKaal~~lt~~lA~el~--~~gIrV-N~I~P 185 (260)
T d1x1ta1 147 ---VASANKSAYVAAKHGVVGFTKVTALETA--GQGITA-NAICP 185 (260)
T ss_dssp ---SCCTTCHHHHHHHHHHHHHHHHHHHHHT--TTTEEE-EEEEE
T ss_pred ---eccCCcchhhhhhhhHHHhHHHHHHHhc--hhCcEE-EEEec
Confidence 1233333577788878888888998876 567774 44454
|
| >d1zema1 c.2.1.2 (A:3-262) Xylitol dehydrogenase {Gluconobacter oxydans [TaxId: 442]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Xylitol dehydrogenase species: Gluconobacter oxydans [TaxId: 442]
Probab=98.22 E-value=3.1e-06 Score=72.76 Aligned_cols=161 Identities=18% Similarity=0.182 Sum_probs=100.0
Q ss_pred CCcEEEEEcCCChhHHHHHHHHHhcccCCCCCCeEEEEEecccchhhhhhhHhhhhhhcc---CCccceEEeCCHHH---
Q 019990 4 NPLRVLVTGAAGQIGYALVPMIARGIMLGPDQPVILHMLDIEPAAEALNGVKMELIDAAF---PLLKGVVATTDVVE--- 77 (332)
Q Consensus 4 ~~~kI~VtGaaG~IGs~l~~~L~~~~~~~~~~~~~i~l~D~~~~~~~~~~~~~dl~~~~~---~~~~~v~~~~~~~~--- 77 (332)
+.+.++||||++.||.+++..|++.|. +|.+.|++. +.++....++..... .+..|++...++.+
T Consensus 4 ~gK~alITGas~GIG~aia~~la~~Ga-------~V~~~~r~~--~~l~~~~~~~~~~g~~~~~~~~Dv~~~~~v~~~~~ 74 (260)
T d1zema1 4 NGKVCLVTGAGGNIGLATALRLAEEGT-------AIALLDMNR--EALEKAEASVREKGVEARSYVCDVTSEEAVIGTVD 74 (260)
T ss_dssp TTCEEEEETTTSHHHHHHHHHHHHTTC-------EEEEEESCH--HHHHHHHHHHHTTTSCEEEEECCTTCHHHHHHHHH
T ss_pred CCCEEEEeCCCCHHHHHHHHHHHHCCC-------EEEEEECCH--HHHHHHHHHHHhcCCcEEEEEccCCCHHHHHHHHH
Confidence 457899999999999999999999886 899999863 445544445543211 12234443332222
Q ss_pred ----HhCCCcEEEEecCCCCC--C--CCChhH---HHhhhHHHH----HHHHHHHHhhcCCCcEEEEEeCChhhHHHHHH
Q 019990 78 ----ACKDVNIAVMVGGFPRK--E--GMERKD---VMSKNVSIY----KAQASALEKHAAPNCKVLVVANPANTNALILK 142 (332)
Q Consensus 78 ----a~~~aDiVi~~ag~~~~--~--~~~~~~---~~~~N~~~~----~~i~~~i~~~~~~~~~viv~snp~~~~~~~~~ 142 (332)
.+-..|++|+.||.... + ..+.++ .++.|+... +.+++.+.+. ..+.+|++++....
T Consensus 75 ~~~~~~g~iDilVnnaG~~~~~~~~~~~~~~~~~~~~~vnl~~~~~~~~~~~~~m~~~--~~G~II~isS~~~~------ 146 (260)
T d1zema1 75 SVVRDFGKIDFLFNNAGYQGAFAPVQDYPSDDFARVLTINVTGAFHVLKAVSRQMITQ--NYGRIVNTASMAGV------ 146 (260)
T ss_dssp HHHHHHSCCCEEEECCCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHH--TCEEEEEECCHHHH------
T ss_pred HHHHHhCCCCeehhhhccccccCccccccHHHHHhhccccccccccchhhHHhhhhhh--cCCCCCeeechhhc------
Confidence 23478999999986432 1 123322 445666544 4444555544 35677877753221
Q ss_pred HHCCCCCCCcEEEeecccHHHHHHHHHHHcCCCCCCeeeeEEEec
Q 019990 143 EFAPSIPAKNITCLTRLDHNRAMGQISERLKVHVSDVKNVIIWGN 187 (332)
Q Consensus 143 ~~~~~~~~~~i~~~t~l~~~r~~~~~a~~~~v~~~~v~~~~V~G~ 187 (332)
.+.|..-.|+.+|-....+.+.+|..++ +..||. +.+-+
T Consensus 147 ---~~~~~~~~Y~asKaal~~ltk~lA~el~--~~gIrV-N~I~P 185 (260)
T d1zema1 147 ---KGPPNMAAYGTSKGAIIALTETAALDLA--PYNIRV-NAISP 185 (260)
T ss_dssp ---SCCTTBHHHHHHHHHHHHHHHHHHHHHG--GGTEEE-EEEEE
T ss_pred ---cCCcchHHHHHHHHHHHHHHHHHHHHhh--hhCCEE-EEecc
Confidence 2233333678888888888888998876 567874 44454
|
| >d1gz6a_ c.2.1.2 (A:) (3R)-hydroxyacyl-CoA dehydrogenase domain of estradiol 17 beta-Dehydrogenase 4 {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: (3R)-hydroxyacyl-CoA dehydrogenase domain of estradiol 17 beta-Dehydrogenase 4 species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=98.22 E-value=3.1e-06 Score=74.44 Aligned_cols=166 Identities=13% Similarity=0.103 Sum_probs=97.8
Q ss_pred CCCCCcEEEEEcCCChhHHHHHHHHHhcccCCCCCCeEEEEEecccch-------hhhhhhHhhhhhhccCCccceEEeC
Q 019990 1 MAKNPLRVLVTGAAGQIGYALVPMIARGIMLGPDQPVILHMLDIEPAA-------EALNGVKMELIDAAFPLLKGVVATT 73 (332)
Q Consensus 1 m~~~~~kI~VtGaaG~IGs~l~~~L~~~~~~~~~~~~~i~l~D~~~~~-------~~~~~~~~dl~~~~~~~~~~v~~~~ 73 (332)
|.-+.+.++||||++.||.+++..|++.|. .|++.|++.+. +.++....++.........++....
T Consensus 3 m~l~gKvalITGas~GIG~aiA~~la~~Ga-------~Vvi~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~ 75 (302)
T d1gz6a_ 3 LRFDGRVVLVTGAGGGLGRAYALAFAERGA-------LVVVNDLGGDFKGVGKGSSAADKVVEEIRRRGGKAVANYDSVE 75 (302)
T ss_dssp CCCTTCEEEETTTTSHHHHHHHHHHHHTTC-------EEEEECCCBCTTSCBCCSHHHHHHHHHHHHTTCEEEEECCCGG
T ss_pred cCcCCCEEEEeCCCCHHHHHHHHHHHHcCC-------EEEEEeCCchhhhhhhhHHHHHHHHHHHhhcccccccccchHH
Confidence 444567899999999999999999999986 89999875421 1122222222211111112222222
Q ss_pred CHH-------HHhCCCcEEEEecCCCCCC---CCChh---HHHhhhHHHH----HHHHHHHHhhcCCCcEEEEEeCChhh
Q 019990 74 DVV-------EACKDVNIAVMVGGFPRKE---GMERK---DVMSKNVSIY----KAQASALEKHAAPNCKVLVVANPANT 136 (332)
Q Consensus 74 ~~~-------~a~~~aDiVi~~ag~~~~~---~~~~~---~~~~~N~~~~----~~i~~~i~~~~~~~~~viv~snp~~~ 136 (332)
+.+ +.+-..|++|+.||..... ..+.+ ..++.|+... +.+++.+++.. .++||++|+....
T Consensus 76 ~~~~~v~~~~~~~G~iDiLVnNAGi~~~~~~~~~~~e~~~~~~~vNl~g~~~~~~~~~p~m~~~~--~G~IV~isS~~~~ 153 (302)
T d1gz6a_ 76 AGEKLVKTALDTFGRIDVVVNNAGILRDRSFSRISDEDWDIIQRVHLRGSFQVTRAAWDHMKKQN--YGRIIMTASASGI 153 (302)
T ss_dssp GHHHHHHHHHHHTSCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT--CEEEEEECCHHHH
T ss_pred HHHHHHHHHHHHcCCCCEEEECCccCCCCChhhCCHHHHhhhhceeehhhHHHHHHhHHHHHhCC--CcEEEEeCChhhc
Confidence 222 2244789999999975421 12222 3456676554 55555566553 5688888763221
Q ss_pred HHHHHHHHCCCCCCCcEEEeecccHHHHHHHHHHHcCCCCCCeeeeEEEec
Q 019990 137 NALILKEFAPSIPAKNITCLTRLDHNRAMGQISERLKVHVSDVKNVIIWGN 187 (332)
Q Consensus 137 ~~~~~~~~~~~~~~~~i~~~t~l~~~r~~~~~a~~~~v~~~~v~~~~V~G~ 187 (332)
. +.+..-.|+.+|-.-..+.+.+|..++ +..||. +.+-+
T Consensus 154 -------~--~~~~~~~Y~asKaal~~lt~~la~E~~--~~gIrV-N~I~P 192 (302)
T d1gz6a_ 154 -------Y--GNFGQANYSAAKLGLLGLANTLVIEGR--KNNIHC-NTIAP 192 (302)
T ss_dssp -------H--CCTTCHHHHHHHHHHHHHHHHHHHHTG--GGTEEE-EEEEE
T ss_pred -------C--CCCCcHHHHHHHHHHHHHHHHHHHHHh--ccCCce-eeeCC
Confidence 1 233333678888888888888888865 556774 33443
|
| >d1dhra_ c.2.1.2 (A:) Dihydropteridin reductase (pteridine reductase) {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Dihydropteridin reductase (pteridine reductase) species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=98.21 E-value=2.2e-07 Score=79.00 Aligned_cols=164 Identities=15% Similarity=0.080 Sum_probs=93.6
Q ss_pred CCcEEEEEcCCChhHHHHHHHHHhcccCCCCCCeEEEEEecccchhhhhhhHhhhhhhccCCccceEE-eCCHHHHhC--
Q 019990 4 NPLRVLVTGAAGQIGYALVPMIARGIMLGPDQPVILHMLDIEPAAEALNGVKMELIDAAFPLLKGVVA-TTDVVEACK-- 80 (332)
Q Consensus 4 ~~~kI~VtGaaG~IGs~l~~~L~~~~~~~~~~~~~i~l~D~~~~~~~~~~~~~dl~~~~~~~~~~v~~-~~~~~~a~~-- 80 (332)
+.++|+||||+|.||.+++..|++.|. +|.++|+...++.......++.. ........ .....+.+.
T Consensus 1 egK~vlITGas~GIG~a~a~~l~~~G~-------~V~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~ 70 (236)
T d1dhra_ 1 EARRVLVYGGRGALGSRCVQAFRARNW-------WVASIDVVENEEASASVIVKMTD---SFTEQADQVTAEVGKLLGDQ 70 (236)
T ss_dssp CCCEEEEETTTSHHHHHHHHHHHTTTC-------EEEEEESSCCTTSSEEEECCCCS---CHHHHHHHHHHHHHHHHTTC
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHCCC-------EEEEEeCCccccccccceeeccc---CcHHHHHHHHHHHHHHhCCC
Confidence 357899999999999999999999886 89999986432111100000000 00000000 011112222
Q ss_pred CCcEEEEecCCCC--CC--CCChh---HHHhhhHHHHHHHHHHHHhhcCCCcEEEEEeCChhhHHHHHHHHCCCCCCCcE
Q 019990 81 DVNIAVMVGGFPR--KE--GMERK---DVMSKNVSIYKAQASALEKHAAPNCKVLVVANPANTNALILKEFAPSIPAKNI 153 (332)
Q Consensus 81 ~aDiVi~~ag~~~--~~--~~~~~---~~~~~N~~~~~~i~~~i~~~~~~~~~viv~snp~~~~~~~~~~~~~~~~~~~i 153 (332)
..|++|+.||... .+ ..+.+ ..++.|+.....+.+.+..+-.+.++++++|+-... .+.+..-.
T Consensus 71 ~iD~lInnAG~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~m~~~G~Iv~isS~~~~---------~~~~~~~~ 141 (236)
T d1dhra_ 71 KVDAILCVAGGWAGGNAKSKSLFKNCDLMWKQSIWTSTISSHLATKHLKEGGLLTLAGAKAAL---------DGTPGMIG 141 (236)
T ss_dssp CEEEEEECCCCCCCBCTTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEECCGGGG---------SCCTTBHH
T ss_pred CceEEEECCcccccccchhcCCHHHHHHHHHHcchHHHHHHHHHHHhcccccceeEEccHHHc---------CCccCCcc
Confidence 3799999998521 11 11212 245677766666666665553345677777753221 22333335
Q ss_pred EEeecccHHHHHHHHHHHcCCCCCCeeeeEEEec
Q 019990 154 TCLTRLDHNRAMGQISERLKVHVSDVKNVIIWGN 187 (332)
Q Consensus 154 ~~~t~l~~~r~~~~~a~~~~v~~~~v~~~~V~G~ 187 (332)
|+.+|-.-..+.+.+|..++-.+..||.. .+.+
T Consensus 142 Y~asKaal~~lt~~la~El~~~~~gI~vn-~v~P 174 (236)
T d1dhra_ 142 YGMAKGAVHQLCQSLAGKNSGMPSGAAAI-AVLP 174 (236)
T ss_dssp HHHHHHHHHHHHHHHTSTTSSCCTTCEEE-EEEE
T ss_pred cHHHHHHHHHHHHHHHHHhccCCCcEEEE-EEEe
Confidence 77888878888888888776556778753 3444
|
| >d1zk4a1 c.2.1.2 (A:1-251) R-specific alcohol dehydrogenase {Lactobacillus brevis [TaxId: 1580]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: R-specific alcohol dehydrogenase species: Lactobacillus brevis [TaxId: 1580]
Probab=98.21 E-value=2.1e-06 Score=73.47 Aligned_cols=164 Identities=8% Similarity=0.010 Sum_probs=97.5
Q ss_pred CCcEEEEEcCCChhHHHHHHHHHhcccCCCCCCeEEEEEecccchhhhhhhHhhhhhhc--cCCccceEEeCCHHH----
Q 019990 4 NPLRVLVTGAAGQIGYALVPMIARGIMLGPDQPVILHMLDIEPAAEALNGVKMELIDAA--FPLLKGVVATTDVVE---- 77 (332)
Q Consensus 4 ~~~kI~VtGaaG~IGs~l~~~L~~~~~~~~~~~~~i~l~D~~~~~~~~~~~~~dl~~~~--~~~~~~v~~~~~~~~---- 77 (332)
+.+.++||||++-||.+++..|++.|. +|.+.|++. +.++....++.... ..+..|++...++.+
T Consensus 5 ~gK~alVTGas~GIG~aia~~la~~Ga-------~V~~~~r~~--~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~ 75 (251)
T d1zk4a1 5 DGKVAIITGGTLGIGLAIATKFVEEGA-------KVMITGRHS--DVGEKAAKSVGTPDQIQFFQHDSSDEDGWTKLFDA 75 (251)
T ss_dssp TTCEEEETTTTSHHHHHHHHHHHHTTC-------EEEEEESCH--HHHHHHHHHHCCTTTEEEEECCTTCHHHHHHHHHH
T ss_pred CCCEEEEeCCCCHHHHHHHHHHHHCCC-------EEEEEECCH--HHHHHHHHHhCCCCcEEEEEccCCCHHHHHHHHHH
Confidence 357899999999999999999999886 899999864 34443333332110 112234443332222
Q ss_pred ---HhCCCcEEEEecCCCCCC---CCChhH---HHhhhHHHH----HHHHHHHHhhcCCCcEEEEEeCChhhHHHHHHHH
Q 019990 78 ---ACKDVNIAVMVGGFPRKE---GMERKD---VMSKNVSIY----KAQASALEKHAAPNCKVLVVANPANTNALILKEF 144 (332)
Q Consensus 78 ---a~~~aDiVi~~ag~~~~~---~~~~~~---~~~~N~~~~----~~i~~~i~~~~~~~~~viv~snp~~~~~~~~~~~ 144 (332)
.+-..|++|+.||..... ..+.++ .++.|+... +..+..+.+.. ..+++|++++....
T Consensus 76 ~~~~~G~iDiLVnnAg~~~~~~~~~~~~~~~~~~~~vnl~g~~~~~~~~~~~m~~~~-~gg~Ii~isS~~~~-------- 146 (251)
T d1zk4a1 76 TEKAFGPVSTLVNNAGIAVNKSVEETTTAEWRKLLAVNLDGVFFGTRLGIQRMKNKG-LGASIINMSSIEGF-------- 146 (251)
T ss_dssp HHHHHSSCCEEEECCCCCCCCCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHTTSS-SCEEEEEECCGGGT--------
T ss_pred HHHHhCCceEEEeccccccccchhcccccchhhhccccccccchhHHHHHHHHHhcC-CCCceEeeecccee--------
Confidence 234689999999874321 233333 456676554 44444455443 33566777753221
Q ss_pred CCCCCCCcEEEeecccHHHHHHHHHHHcCCCCCCeeeeEEEec
Q 019990 145 APSIPAKNITCLTRLDHNRAMGQISERLKVHVSDVKNVIIWGN 187 (332)
Q Consensus 145 ~~~~~~~~i~~~t~l~~~r~~~~~a~~~~v~~~~v~~~~V~G~ 187 (332)
.+.|..-.|+.+|-....+.+.+|..+...+..||. +.+-+
T Consensus 147 -~~~~~~~~Y~asKaal~~lt~~lA~e~~l~~~gIrV-N~I~P 187 (251)
T d1zk4a1 147 -VGDPSLGAYNASKGAVRIMSKSAALDCALKDYDVRV-NTVHP 187 (251)
T ss_dssp -SCCTTCHHHHHHHHHHHHHHHHHHHHHHHTTCSEEE-EEEEE
T ss_pred -ccCCCchhHHHHHHHHhcchHHHHHHHhcCCCcEEE-EEEeC
Confidence 123333357777777777777777765555677874 43443
|
| >d1g0oa_ c.2.1.2 (A:) 1,3,8-trihydroxynaphtalene reductase (THNR, naphtol reductase) {Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 1,3,8-trihydroxynaphtalene reductase (THNR, naphtol reductase) species: Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]
Probab=98.20 E-value=4.8e-06 Score=71.98 Aligned_cols=165 Identities=13% Similarity=0.079 Sum_probs=99.5
Q ss_pred CCcEEEEEcCCChhHHHHHHHHHhcccCCCCCCeEEEEEecccchhhhhhhHhhhhhhcc---CCccceEEeCCH-----
Q 019990 4 NPLRVLVTGAAGQIGYALVPMIARGIMLGPDQPVILHMLDIEPAAEALNGVKMELIDAAF---PLLKGVVATTDV----- 75 (332)
Q Consensus 4 ~~~kI~VtGaaG~IGs~l~~~L~~~~~~~~~~~~~i~l~D~~~~~~~~~~~~~dl~~~~~---~~~~~v~~~~~~----- 75 (332)
+.++++||||++-||.+++..|++.|. +|++.|++.. +.++....++..... ....|+....++
T Consensus 17 ~gK~~lITGas~GIG~aia~~la~~Ga-------~Vvi~~~~~~-~~~~~~~~~~~~~g~~~~~~~~D~~~~~~v~~~~~ 88 (272)
T d1g0oa_ 17 EGKVALVTGAGRGIGREMAMELGRRGC-------KVIVNYANST-ESAEEVVAAIKKNGSDAACVKANVGVVEDIVRMFE 88 (272)
T ss_dssp TTCEEEETTTTSHHHHHHHHHHHHTTC-------EEEEEESSCH-HHHHHHHHHHHHTTCCEEEEECCTTCHHHHHHHHH
T ss_pred CCCEEEEeCCCCHHHHHHHHHHHHcCC-------EEEEEeCCch-HHHHHHHHHHHhhCCceeeEeCCCCCHHHHHHHHH
Confidence 357899999999999999999999886 8999987642 334433333332211 111233332222
Q ss_pred --HHHhCCCcEEEEecCCCCCC---CCCh---hHHHhhhHHHHHHHHHHHHhhcCCCcEEEEEeCChhhHHHHHHHHCCC
Q 019990 76 --VEACKDVNIAVMVGGFPRKE---GMER---KDVMSKNVSIYKAQASALEKHAAPNCKVLVVANPANTNALILKEFAPS 147 (332)
Q Consensus 76 --~~a~~~aDiVi~~ag~~~~~---~~~~---~~~~~~N~~~~~~i~~~i~~~~~~~~~viv~snp~~~~~~~~~~~~~~ 147 (332)
.+.+-..|++|+.+|..... ..+. ...+..|+.....+.+.+..+-.....++++++..... ..
T Consensus 89 ~~~~~~g~idilV~nag~~~~~~~~~~~~~~~~~~~~~nl~~~~~~~~~~~~~m~~~g~~i~i~s~~~~~--------~~ 160 (272)
T d1g0oa_ 89 EAVKIFGKLDIVCSNSGVVSFGHVKDVTPEEFDRVFTINTRGQFFVAREAYKHLEIGGRLILMGSITGQA--------KA 160 (272)
T ss_dssp HHHHHHSCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHSCTTCEEEEECCGGGTC--------SS
T ss_pred HHHHHhCCCCccccccccchhhhhhhhhhhHHHHHhhhccceeeeecccccccccccccccccccccccc--------cc
Confidence 22344789999999864322 1222 23456677777677776666543455666666432210 11
Q ss_pred CCCCcEEEeecccHHHHHHHHHHHcCCCCCCeeeeEEEec
Q 019990 148 IPAKNITCLTRLDHNRAMGQISERLKVHVSDVKNVIIWGN 187 (332)
Q Consensus 148 ~~~~~i~~~t~l~~~r~~~~~a~~~~v~~~~v~~~~V~G~ 187 (332)
.+..-.|+.+|-.-..+.+.+|..++ +..||. |.+-+
T Consensus 161 ~~~~~~Y~asKaal~~ltk~lA~e~~--~~gIrV-N~I~P 197 (272)
T d1g0oa_ 161 VPKHAVYSGSKGAIETFARCMAIDMA--DKKITV-NVVAP 197 (272)
T ss_dssp CSSCHHHHHHHHHHHHHHHHHHHHHG--GGTCEE-EEEEE
T ss_pred ccchhhHHHHHHHHHHHHHHHHHHhc--hhCeEE-EEEcc
Confidence 22223577788777788888888876 456773 44454
|
| >d1xgka_ c.2.1.2 (A:) Negative transcriptional regulator NmrA {Aspergillus nidulans [TaxId: 162425]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Negative transcriptional regulator NmrA species: Aspergillus nidulans [TaxId: 162425]
Probab=98.19 E-value=4.1e-06 Score=74.73 Aligned_cols=149 Identities=12% Similarity=0.076 Sum_probs=80.3
Q ss_pred CCcEEEEEcCCChhHHHHHHHHHhcccCCCCCCeEEEEEecccchhhhhhhHhhhhhh-cc-CCccceEEeCC-HHHHhC
Q 019990 4 NPLRVLVTGAAGQIGYALVPMIARGIMLGPDQPVILHMLDIEPAAEALNGVKMELIDA-AF-PLLKGVVATTD-VVEACK 80 (332)
Q Consensus 4 ~~~kI~VtGaaG~IGs~l~~~L~~~~~~~~~~~~~i~l~D~~~~~~~~~~~~~dl~~~-~~-~~~~~v~~~~~-~~~a~~ 80 (332)
+.++|+||||+||||++++..|++.|+ +|+.+-++.+.... ..+... .. ....|+....+ +..++.
T Consensus 2 ~kktIlVtGatG~iG~~lv~~Ll~~G~-------~V~~l~R~~~~~~~----~~~~~~~~v~~~~gD~~d~~~~~~~a~~ 70 (350)
T d1xgka_ 2 QKKTIAVVGATGRQGASLIRVAAAVGH-------HVRAQVHSLKGLIA----EELQAIPNVTLFQGPLLNNVPLMDTLFE 70 (350)
T ss_dssp CCCCEEEESTTSHHHHHHHHHHHHTTC-------CEEEEESCSCSHHH----HHHHTSTTEEEEESCCTTCHHHHHHHHT
T ss_pred CCCEEEEECCChHHHHHHHHHHHhCCC-------eEEEEECCcchhhh----hhhcccCCCEEEEeeCCCcHHHHHHHhc
Confidence 567899999999999999999999886 67777654321111 112111 00 01123322222 445678
Q ss_pred CCcEEEEecCCCCCCCCChhHHHhhhHHHHHHHHHHHHhhcCCCcEEEEEeCChhhHHHHHHHHCCCCCCCcEEEeeccc
Q 019990 81 DVNIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEKHAAPNCKVLVVANPANTNALILKEFAPSIPAKNITCLTRLD 160 (332)
Q Consensus 81 ~aDiVi~~ag~~~~~~~~~~~~~~~N~~~~~~i~~~i~~~~~~~~~viv~snp~~~~~~~~~~~~~~~~~~~i~~~t~l~ 160 (332)
++|.+++..... ...+....+++++++.+.+. .++++.|...+.-. . ...+ .....+
T Consensus 71 ~~~~~~~~~~~~----------~~~~~~~~~~~~~aa~~agv--~~~v~~Ss~~~~~~-----~-~~~~-----~~~~~~ 127 (350)
T d1xgka_ 71 GAHLAFINTTSQ----------AGDEIAIGKDLADAAKRAGT--IQHYIYSSMPDHSL-----Y-GPWP-----AVPMWA 127 (350)
T ss_dssp TCSEEEECCCST----------TSCHHHHHHHHHHHHHHHSC--CSEEEEEECCCGGG-----T-SSCC-----CCTTTH
T ss_pred CCceEEeecccc----------cchhhhhhhHHHHHHHHhCC--CceEEEeecccccc-----C-Cccc-----chhhhh
Confidence 999988764221 12235556778888888762 24455554222100 0 1111 111122
Q ss_pred HHHHHHHHHHHcCCCCCCeeeeEEEe
Q 019990 161 HNRAMGQISERLKVHVSDVKNVIIWG 186 (332)
Q Consensus 161 ~~r~~~~~a~~~~v~~~~v~~~~V~G 186 (332)
+......+....+++...++....++
T Consensus 128 ~k~~~~~~~~~~~~~~~~vr~~~~~~ 153 (350)
T d1xgka_ 128 PKFTVENYVRQLGLPSTFVYAGIYNN 153 (350)
T ss_dssp HHHHHHHHHHTSSSCEEEEEECEEGG
T ss_pred hHHHHHHHHHhhccCceeeeeceeec
Confidence 22333445556677777777654333
|
| >d1bg6a2 c.2.1.6 (A:4-187) N-(1-D-carboxylethyl)-L-norvaline dehydrogenase {Arthrobacter, strain 1c [TaxId: 1663]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: N-(1-D-carboxylethyl)-L-norvaline dehydrogenase species: Arthrobacter, strain 1c [TaxId: 1663]
Probab=98.18 E-value=1.6e-05 Score=63.85 Aligned_cols=99 Identities=16% Similarity=0.122 Sum_probs=63.2
Q ss_pred CcEEEEEcCCChhHHHHHHHHHhcccCCCCCCeEEEEEecccchhhhhhhHhhhhhh--ccCC----ccceEEeCCHHHH
Q 019990 5 PLRVLVTGAAGQIGYALVPMIARGIMLGPDQPVILHMLDIEPAAEALNGVKMELIDA--AFPL----LKGVVATTDVVEA 78 (332)
Q Consensus 5 ~~kI~VtGaaG~IGs~l~~~L~~~~~~~~~~~~~i~l~D~~~~~~~~~~~~~dl~~~--~~~~----~~~v~~~~~~~~a 78 (332)
.+||+|+| +|.+|+.++..|.+.|+ +|.++|+++ +.+.... +.... ..+. .......+++.++
T Consensus 1 sk~iaIiG-aG~~G~~~A~~l~~~G~-------~V~~~~r~~--~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~e~ 69 (184)
T d1bg6a2 1 SKTYAVLG-LGNGGHAFAAYLALKGQ-------SVLAWDIDA--QRIKEIQ-DRGAIIAEGPGLAGTAHPDLLTSDIGLA 69 (184)
T ss_dssp CCEEEEEC-CSHHHHHHHHHHHHTTC-------EEEEECSCH--HHHHHHH-HHTSEEEESSSCCEEECCSEEESCHHHH
T ss_pred CCEEEEEC-ccHHHHHHHHHHHHCCC-------EEEEEECCH--HHHHHHH-HcCCCchhhhhhhhhhhhhhhhhhhHhH
Confidence 37899999 69999999999999886 899999863 2222111 11000 0011 1233445678899
Q ss_pred hCCCcEEEEecCCCCCCCCChhHHHhhhHHHHHHHHHHHHhhcCCCcEEEEE
Q 019990 79 CKDVNIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEKHAAPNCKVLVV 130 (332)
Q Consensus 79 ~~~aDiVi~~ag~~~~~~~~~~~~~~~N~~~~~~i~~~i~~~~~~~~~viv~ 130 (332)
++++|+||++... .....+++.++.+-.++..++..
T Consensus 70 ~~~aD~iii~v~~----------------~~~~~~~~~i~~~l~~~~~iv~~ 105 (184)
T d1bg6a2 70 VKDADVILIVVPA----------------IHHASIAANIASYISEGQLIILN 105 (184)
T ss_dssp HTTCSEEEECSCG----------------GGHHHHHHHHGGGCCTTCEEEES
T ss_pred hcCCCEEEEEEch----------------hHHHHHHHHhhhccCCCCEEEEe
Confidence 9999999986311 01345677777776455544433
|
| >d2ae2a_ c.2.1.2 (A:) Tropinone reductase {Jimsonweed (Datura stramonium), II [TaxId: 4076]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Tropinone reductase species: Jimsonweed (Datura stramonium), II [TaxId: 4076]
Probab=98.18 E-value=7.4e-06 Score=70.29 Aligned_cols=161 Identities=16% Similarity=0.141 Sum_probs=97.6
Q ss_pred CCcEEEEEcCCChhHHHHHHHHHhcccCCCCCCeEEEEEecccchhhhhhhHhhhhhhcc---CCccceEEeCCHHHH--
Q 019990 4 NPLRVLVTGAAGQIGYALVPMIARGIMLGPDQPVILHMLDIEPAAEALNGVKMELIDAAF---PLLKGVVATTDVVEA-- 78 (332)
Q Consensus 4 ~~~kI~VtGaaG~IGs~l~~~L~~~~~~~~~~~~~i~l~D~~~~~~~~~~~~~dl~~~~~---~~~~~v~~~~~~~~a-- 78 (332)
+.+.++||||++-||.+++..|++.|. +|++.|++. +.++....++..... .+..|++...+..+.
T Consensus 7 ~GK~alITGas~GIG~aia~~la~~Ga-------~V~~~~r~~--~~l~~~~~~~~~~g~~~~~~~~Dv~~~~~v~~~~~ 77 (259)
T d2ae2a_ 7 EGCTALVTGGSRGIGYGIVEELASLGA-------SVYTCSRNQ--KELNDCLTQWRSKGFKVEASVCDLSSRSERQELMN 77 (259)
T ss_dssp TTCEEEEESCSSHHHHHHHHHHHHTTC-------EEEEEESCH--HHHHHHHHHHHHTTCEEEEEECCTTCHHHHHHHHH
T ss_pred CCCEEEEeCCCCHHHHHHHHHHHHCCC-------EEEEEECCH--HHHHHHHHHHHhcCCCceEEEeeCCCHHHHHHHHH
Confidence 467899999999999999999999886 899999863 445544444433211 112344433322221
Q ss_pred -----hC-CCcEEEEecCCCCCC---CCChh---HHHhhhHHHH----HHHHHHHHhhcCCCcEEEEEeCChhhHHHHHH
Q 019990 79 -----CK-DVNIAVMVGGFPRKE---GMERK---DVMSKNVSIY----KAQASALEKHAAPNCKVLVVANPANTNALILK 142 (332)
Q Consensus 79 -----~~-~aDiVi~~ag~~~~~---~~~~~---~~~~~N~~~~----~~i~~~i~~~~~~~~~viv~snp~~~~~~~~~ 142 (332)
+. ..|++|+.||..... ..+.+ ..++.|+... +..++.+.+. ..+.+|++++....
T Consensus 78 ~~~~~~~~~idilvnnAG~~~~~~~~~~~~e~~~~~~~vNl~~~~~~~~~~~~~m~~~--~~G~Ii~isS~~~~------ 149 (259)
T d2ae2a_ 78 TVANHFHGKLNILVNNAGIVIYKEAKDYTVEDYSLIMSINFEAAYHLSVLAHPFLKAS--ERGNVVFISSVSGA------ 149 (259)
T ss_dssp HHHHHTTTCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHT--SSEEEEEECCGGGT------
T ss_pred HHHHHhCCCceEEEECCceeccCccccCCHHHHHHHHhcccceeEEEEeeccchhhhh--cccccccccccccc------
Confidence 23 379999999974322 12322 2456676544 3444444443 35677777753321
Q ss_pred HHCCCCCCCcEEEeecccHHHHHHHHHHHcCCCCCCeeeeEEEec
Q 019990 143 EFAPSIPAKNITCLTRLDHNRAMGQISERLKVHVSDVKNVIIWGN 187 (332)
Q Consensus 143 ~~~~~~~~~~i~~~t~l~~~r~~~~~a~~~~v~~~~v~~~~V~G~ 187 (332)
.+.|..-.|+.+|-.-..+.+.+|..++ +..||. +.+-+
T Consensus 150 ---~~~~~~~~Y~asKaal~~lt~~lA~el~--~~gIrV-N~I~P 188 (259)
T d2ae2a_ 150 ---LAVPYEAVYGATKGAMDQLTRCLAFEWA--KDNIRV-NGVGP 188 (259)
T ss_dssp ---SCCTTCHHHHHHHHHHHHHHHHHHHHTG--GGTEEE-EEEEE
T ss_pred ---cccccccchHHHHHHHHHHHHHHHHHhC--cCceEE-EEeee
Confidence 1223333567777777788888888875 566774 43343
|
| >d2c07a1 c.2.1.2 (A:54-304) beta-keto acyl carrier protein reductase {Malaria parasite (Plasmodium falciparum) [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: beta-keto acyl carrier protein reductase species: Malaria parasite (Plasmodium falciparum) [TaxId: 5833]
Probab=98.17 E-value=2.9e-06 Score=72.60 Aligned_cols=161 Identities=15% Similarity=0.183 Sum_probs=99.8
Q ss_pred CCcEEEEEcCCChhHHHHHHHHHhcccCCCCCCeEEEEEecccchhhhhhhHhhhhhhc---cCCccceEEeCCHHH---
Q 019990 4 NPLRVLVTGAAGQIGYALVPMIARGIMLGPDQPVILHMLDIEPAAEALNGVKMELIDAA---FPLLKGVVATTDVVE--- 77 (332)
Q Consensus 4 ~~~kI~VtGaaG~IGs~l~~~L~~~~~~~~~~~~~i~l~D~~~~~~~~~~~~~dl~~~~---~~~~~~v~~~~~~~~--- 77 (332)
+.+.++||||++.||.+++..|++.|. +|.+.|++. +.++....++.... ..+..|++...++.+
T Consensus 9 enKvalITGas~GIG~a~a~~la~~Ga-------~V~~~~r~~--~~l~~~~~~l~~~g~~~~~~~~Dvt~~~~v~~~~~ 79 (251)
T d2c07a1 9 ENKVALVTGAGRGIGREIAKMLAKSVS-------HVICISRTQ--KSCDSVVDEIKSFGYESSGYAGDVSKKEEISEVIN 79 (251)
T ss_dssp SSCEEEEESTTSHHHHHHHHHHTTTSS-------EEEEEESSH--HHHHHHHHHHHTTTCCEEEEECCTTCHHHHHHHHH
T ss_pred CCCEEEEeCCCCHHHHHHHHHHHHcCC-------EEEEEECCH--HHHHHHHHHHHhcCCcEEEEEccCCCHHHHHHHHH
Confidence 356788999999999999999999885 899999853 44554455554321 112234444333322
Q ss_pred ----HhCCCcEEEEecCCCCCC---CCChh---HHHhhhHHHH----HHHHHHHHhhcCCCcEEEEEeCChhhHHHHHHH
Q 019990 78 ----ACKDVNIAVMVGGFPRKE---GMERK---DVMSKNVSIY----KAQASALEKHAAPNCKVLVVANPANTNALILKE 143 (332)
Q Consensus 78 ----a~~~aDiVi~~ag~~~~~---~~~~~---~~~~~N~~~~----~~i~~~i~~~~~~~~~viv~snp~~~~~~~~~~ 143 (332)
.+...|++|+.||..... ..+.+ ..+..|+... +..++.+.+. ..+.+|++|+....
T Consensus 80 ~~~~~~g~iDilvnnag~~~~~~~~~~~~~~~~~~~~vNl~~~~~~~~~~~~~m~~~--~~G~IVnisS~~~~------- 150 (251)
T d2c07a1 80 KILTEHKNVDILVNNAGITRDNLFLRMKNDEWEDVLRTNLNSLFYITQPISKRMINN--RYGRIINISSIVGL------- 150 (251)
T ss_dssp HHHHHCSCCCEEEECCCCCCCCCTTTCCHHHHHHHHHHHTTHHHHHHHHHHHHHHHH--TCEEEEEECCTHHH-------
T ss_pred HHHHhcCCceeeeeccccccccccccccHHHHhhhheeeehhhhhhhhhcCcccccC--CCeEEEEECCHHhc-------
Confidence 234789999999874322 12222 2445565444 5555556654 35688888764321
Q ss_pred HCCCCCCCcEEEeecccHHHHHHHHHHHcCCCCCCeeeeEEEec
Q 019990 144 FAPSIPAKNITCLTRLDHNRAMGQISERLKVHVSDVKNVIIWGN 187 (332)
Q Consensus 144 ~~~~~~~~~i~~~t~l~~~r~~~~~a~~~~v~~~~v~~~~V~G~ 187 (332)
.+.+..-.|+.+|-.-..+.+.+|..++ +..||. +.+-+
T Consensus 151 --~~~~~~~~Y~asKaal~~ltr~lA~el~--~~gIrV-N~V~P 189 (251)
T d2c07a1 151 --TGNVGQANYSSSKAGVIGFTKSLAKELA--SRNITV-NAIAP 189 (251)
T ss_dssp --HCCTTCHHHHHHHHHHHHHHHHHHHHHG--GGTEEE-EEEEE
T ss_pred --CCCCCCHHHHHHHHHHHHHHHHHHHHhh--hhCeEE-EEEcc
Confidence 1233333677888878888888888875 566774 44443
|
| >d1geea_ c.2.1.2 (A:) Glucose dehydrogenase {Bacillus megaterium [TaxId: 1404]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Glucose dehydrogenase species: Bacillus megaterium [TaxId: 1404]
Probab=98.16 E-value=4.2e-06 Score=72.00 Aligned_cols=163 Identities=11% Similarity=0.100 Sum_probs=97.4
Q ss_pred CCcEEEEEcCCChhHHHHHHHHHhcccCCCCCCeEEEEEecccchhhhhhhHhhhhhhc---cCCccceEEeCCHHHH--
Q 019990 4 NPLRVLVTGAAGQIGYALVPMIARGIMLGPDQPVILHMLDIEPAAEALNGVKMELIDAA---FPLLKGVVATTDVVEA-- 78 (332)
Q Consensus 4 ~~~kI~VtGaaG~IGs~l~~~L~~~~~~~~~~~~~i~l~D~~~~~~~~~~~~~dl~~~~---~~~~~~v~~~~~~~~a-- 78 (332)
+.+.++||||++.||.+++..|++.|. +|++.|++. ++.++....++.... ..+..|++...++.+.
T Consensus 6 ~gK~alITGas~GIG~aia~~la~~G~-------~Vv~~~r~~-~~~~~~~~~~~~~~g~~~~~~~~Dvt~~~~v~~~~~ 77 (261)
T d1geea_ 6 EGKVVVITGSSTGLGKSMAIRFATEKA-------KVVVNYRSK-EDEANSVLEEIKKVGGEAIAVKGDVTVESDVINLVQ 77 (261)
T ss_dssp TTCEEEETTCSSHHHHHHHHHHHHTTC-------EEEEEESSC-HHHHHHHHHHHHHTTCEEEEEECCTTSHHHHHHHHH
T ss_pred CCCEEEEeCCCcHHHHHHHHHHHHCCC-------EEEEEeCCc-HHHHHHHHHHHHhcCCcEEEEEccCCCHHHHHHHHH
Confidence 457899999999999999999999886 899999863 223443333443321 1122344433333322
Q ss_pred -----hCCCcEEEEecCCCCCC---CCChh---HHHhhhHHHH----HHHHHHHHhhcCCCcEEEEEeCChhhHHHHHHH
Q 019990 79 -----CKDVNIAVMVGGFPRKE---GMERK---DVMSKNVSIY----KAQASALEKHAAPNCKVLVVANPANTNALILKE 143 (332)
Q Consensus 79 -----~~~aDiVi~~ag~~~~~---~~~~~---~~~~~N~~~~----~~i~~~i~~~~~~~~~viv~snp~~~~~~~~~~ 143 (332)
+...|++|+.||..... ..+.+ ..++.|+... +..++.+.+.. ....|+++|+....
T Consensus 78 ~~~~~~G~iDiLVnnAG~~~~~~~~~~~~~~~~~~~~vNl~g~~~~~~~~~~~m~~~~-~g~~Iv~isS~~~~------- 149 (261)
T d1geea_ 78 SAIKEFGKLDVMINNAGLENPVSSHEMSLSDWNKVIDTNLTGAFLGSREAIKYFVEND-IKGTVINMSSVHEK------- 149 (261)
T ss_dssp HHHHHHSCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHTT-CCCEEEEECCGGGT-------
T ss_pred HHHHHhCCCCEeeccceecCCcchhhcCHHHHHHHHHHhcccchhHHHHHhhhhcccc-ccccccccccchhc-------
Confidence 34689999999874321 12333 2456675544 55555565543 33456666653321
Q ss_pred HCCCCCCCcEEEeecccHHHHHHHHHHHcCCCCCCeeeeEEEec
Q 019990 144 FAPSIPAKNITCLTRLDHNRAMGQISERLKVHVSDVKNVIIWGN 187 (332)
Q Consensus 144 ~~~~~~~~~i~~~t~l~~~r~~~~~a~~~~v~~~~v~~~~V~G~ 187 (332)
.+.|..-.|+.+|-.-..+.+.+|..++ +..||. +.+-+
T Consensus 150 --~~~~~~~~Y~asKaal~~lt~~lA~e~~--~~gIrV-N~I~P 188 (261)
T d1geea_ 150 --IPWPLFVHYAASKGGMKLMTETLALEYA--PKGIRV-NNIGP 188 (261)
T ss_dssp --SCCTTCHHHHHHHHHHHHHHHHHHHHHG--GGTCEE-EEEEE
T ss_pred --ccCccccccccCCccchhhHHHHHHHhh--hhCcEE-EEEee
Confidence 1233333577788778888888888876 556774 33343
|
| >d1iy8a_ c.2.1.2 (A:) Levodione reductase {Corynebacterium aquaticum [TaxId: 144185]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Levodione reductase species: Corynebacterium aquaticum [TaxId: 144185]
Probab=98.16 E-value=6e-06 Score=70.86 Aligned_cols=161 Identities=14% Similarity=0.109 Sum_probs=97.2
Q ss_pred CCcEEEEEcCCChhHHHHHHHHHhcccCCCCCCeEEEEEecccchhhhhhhHhhhhhhc-----cCCccceEEeCCHHH-
Q 019990 4 NPLRVLVTGAAGQIGYALVPMIARGIMLGPDQPVILHMLDIEPAAEALNGVKMELIDAA-----FPLLKGVVATTDVVE- 77 (332)
Q Consensus 4 ~~~kI~VtGaaG~IGs~l~~~L~~~~~~~~~~~~~i~l~D~~~~~~~~~~~~~dl~~~~-----~~~~~~v~~~~~~~~- 77 (332)
+.+.++||||++-||.+++..|++.|. +|.+.|++. +.++....++.... .....|++...+..+
T Consensus 3 ~gK~alITGas~GIG~aia~~la~~Ga-------~V~i~~r~~--~~l~~~~~~~~~~~~~~~~~~~~~Dvt~~~~v~~~ 73 (258)
T d1iy8a_ 3 TDRVVLITGGGSGLGRATAVRLAAEGA-------KLSLVDVSS--EGLEASKAAVLETAPDAEVLTTVADVSDEAQVEAY 73 (258)
T ss_dssp TTCEEEEETTTSHHHHHHHHHHHHTTC-------EEEEEESCH--HHHHHHHHHHHHHCTTCCEEEEECCTTSHHHHHHH
T ss_pred CCCEEEEeCCCCHHHHHHHHHHHHCCC-------EEEEEECCH--HHHHHHHHHHHhhCCCCeEEEEeccCCCHHHHHHH
Confidence 356899999999999999999999986 899999864 34443333332211 111234443333322
Q ss_pred ------HhCCCcEEEEecCCCCC--C--CCChhH---HHhhhHHHHHH----HHHHHHhhcCCCcEEEEEeCChhhHHHH
Q 019990 78 ------ACKDVNIAVMVGGFPRK--E--GMERKD---VMSKNVSIYKA----QASALEKHAAPNCKVLVVANPANTNALI 140 (332)
Q Consensus 78 ------a~~~aDiVi~~ag~~~~--~--~~~~~~---~~~~N~~~~~~----i~~~i~~~~~~~~~viv~snp~~~~~~~ 140 (332)
.+-..|++|+.||.... + ..+.++ .++.|+...-. +.+.+++. ..+.+|++++....
T Consensus 74 ~~~~~~~~G~iDiLVnnAG~~~~~~~~~~~~~~~~~~~~~vNl~g~~~~~~~~~~~m~~~--~~G~Ii~isS~~~~---- 147 (258)
T d1iy8a_ 74 VTATTERFGRIDGFFNNAGIEGKQNPTESFTAAEFDKVVSINLRGVFLGLEKVLKIMREQ--GSGMVVNTASVGGI---- 147 (258)
T ss_dssp HHHHHHHHSCCSEEEECCCCCCCCBCGGGSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHH--TCCEEEEECCGGGT----
T ss_pred HHHHHHHhCCCCEEEECCcccccCCchhhhhhhHHHHHhhhhccchhhhhhhhHhhhhhh--cCCCCcccccHhhc----
Confidence 23478999999986322 1 123332 45667655544 44444444 34677777753321
Q ss_pred HHHHCCCCCCCcEEEeecccHHHHHHHHHHHcCCCCCCeeeeEEEec
Q 019990 141 LKEFAPSIPAKNITCLTRLDHNRAMGQISERLKVHVSDVKNVIIWGN 187 (332)
Q Consensus 141 ~~~~~~~~~~~~i~~~t~l~~~r~~~~~a~~~~v~~~~v~~~~V~G~ 187 (332)
.+.|..-.|+.+|-.-..+.+.+|..++ +..||. +.+-+
T Consensus 148 -----~~~~~~~~Y~asKaal~~lt~~lA~el~--~~gIrV-N~i~P 186 (258)
T d1iy8a_ 148 -----RGIGNQSGYAAAKHGVVGLTRNSAVEYG--RYGIRI-NAIAP 186 (258)
T ss_dssp -----SBCSSBHHHHHHHHHHHHHHHHHHHHHG--GGTCEE-EEEEE
T ss_pred -----cCCCCchHHHHHHHHHHHHHHHHHHHhC--ccCceE-EEEee
Confidence 1233333567777777888888888875 566774 44454
|
| >d2bd0a1 c.2.1.2 (A:2-241) Bacterial sepiapterin reductase {Chlorobium tepidum [TaxId: 1097]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Bacterial sepiapterin reductase species: Chlorobium tepidum [TaxId: 1097]
Probab=98.15 E-value=6.5e-06 Score=69.82 Aligned_cols=159 Identities=18% Similarity=0.249 Sum_probs=94.6
Q ss_pred EEEEcCCChhHHHHHHHHHhcccCCCCCCeEEEEEecccchhhhhhhHhhhhhhc---cCCccceEEeCCHHH-------
Q 019990 8 VLVTGAAGQIGYALVPMIARGIMLGPDQPVILHMLDIEPAAEALNGVKMELIDAA---FPLLKGVVATTDVVE------- 77 (332)
Q Consensus 8 I~VtGaaG~IGs~l~~~L~~~~~~~~~~~~~i~l~D~~~~~~~~~~~~~dl~~~~---~~~~~~v~~~~~~~~------- 77 (332)
|+||||++-||.+++..|++.|.--......+.+++++. +.++....++.... ..+..|++...++.+
T Consensus 4 vlITGas~GIG~aia~~la~~G~~~~~~~~~v~~~~r~~--~~l~~~~~~~~~~g~~~~~~~~Dvt~~~~v~~~~~~~~~ 81 (240)
T d2bd0a1 4 LLITGAGKGIGRAIALEFARAARHHPDFEPVLVLSSRTA--ADLEKISLECRAEGALTDTITADISDMADVRRLTTHIVE 81 (240)
T ss_dssp EEEETTTSHHHHHHHHHHHHHTTTCTTCCEEEEEEESCH--HHHHHHHHHHHTTTCEEEEEECCTTSHHHHHHHHHHHHH
T ss_pred EEEccCCCHHHHHHHHHHHHhCccccccCcEEEEEeCCH--HHHHHHHHHHHhcCCcEEEEEecCCCHHHHHHHHHHHHH
Confidence 689999999999999999987741000112488888753 34554444554321 112234443333222
Q ss_pred HhCCCcEEEEecCCCCCC---CCChh---HHHhhhHHHH----HHHHHHHHhhcCCCcEEEEEeCChhhHHHHHHHHCCC
Q 019990 78 ACKDVNIAVMVGGFPRKE---GMERK---DVMSKNVSIY----KAQASALEKHAAPNCKVLVVANPANTNALILKEFAPS 147 (332)
Q Consensus 78 a~~~aDiVi~~ag~~~~~---~~~~~---~~~~~N~~~~----~~i~~~i~~~~~~~~~viv~snp~~~~~~~~~~~~~~ 147 (332)
.+-..|++|+.||..... ..+.+ ..++.|+... +.+++.+++. ..+.++++++.... .+
T Consensus 82 ~~g~iDilvnnAg~~~~~~~~~~~~~~~~~~~~vNl~g~~~~~~~~~~~m~~~--~~G~Ii~isS~~~~---------~~ 150 (240)
T d2bd0a1 82 RYGHIDCLVNNAGVGRFGALSDLTEEDFDYTMNTNLKGTFFLTQALFALMERQ--HSGHIFFITSVAAT---------KA 150 (240)
T ss_dssp HTSCCSEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHH--TCEEEEEECCGGGT---------SC
T ss_pred HcCCcceeecccccccCCccccCCHHHHhhcCCEeehHHHHHHHHHhHHHHhc--CCCceEEEechhhc---------CC
Confidence 234689999999874321 12222 3456675444 5566666664 35677777754321 23
Q ss_pred CCCCcEEEeecccHHHHHHHHHHHcCCCCCCeee
Q 019990 148 IPAKNITCLTRLDHNRAMGQISERLKVHVSDVKN 181 (332)
Q Consensus 148 ~~~~~i~~~t~l~~~r~~~~~a~~~~v~~~~v~~ 181 (332)
.|..-.|+.+|-.-..|.+.++..++ +..||.
T Consensus 151 ~~~~~~Y~asK~al~~lt~~la~el~--~~gIrv 182 (240)
T d2bd0a1 151 FRHSSIYCMSKFGQRGLVETMRLYAR--KCNVRI 182 (240)
T ss_dssp CTTCHHHHHHHHHHHHHHHHHHHHHT--TTTEEE
T ss_pred CCCChHHHHHHHHHHHHHHHHHHHhC--cCCeEE
Confidence 34344677788777788888888765 456774
|
| >d1ooea_ c.2.1.2 (A:) Dihydropteridin reductase (pteridine reductase) {Nematode (Caenorhabditis elegans) [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Dihydropteridin reductase (pteridine reductase) species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Probab=98.14 E-value=4.2e-07 Score=77.13 Aligned_cols=155 Identities=12% Similarity=0.074 Sum_probs=90.6
Q ss_pred CcEEEEEcCCChhHHHHHHHHHhcccCCCCCCeEEEEEecccchhhhhhhHhhhhhhccCCccceEE-----eCCHHHHh
Q 019990 5 PLRVLVTGAAGQIGYALVPMIARGIMLGPDQPVILHMLDIEPAAEALNGVKMELIDAAFPLLKGVVA-----TTDVVEAC 79 (332)
Q Consensus 5 ~~kI~VtGaaG~IGs~l~~~L~~~~~~~~~~~~~i~l~D~~~~~~~~~~~~~dl~~~~~~~~~~v~~-----~~~~~~a~ 79 (332)
..||+||||+|.||.+++..|++.|. +|.++|++..+..... .......+... .....+.+
T Consensus 2 ~gkVlITGas~GIG~aia~~l~~~G~-------~V~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~ 67 (235)
T d1ooea_ 2 SGKVIVYGGKGALGSAILEFFKKNGY-------TVLNIDLSANDQADSN-------ILVDGNKNWTEQEQSILEQTASSL 67 (235)
T ss_dssp CEEEEEETTTSHHHHHHHHHHHHTTE-------EEEEEESSCCTTSSEE-------EECCTTSCHHHHHHHHHHHHHHHH
T ss_pred CCEEEEECCCCHHHHHHHHHHHHCCC-------EEEEEECCchhccccc-------ceeccccCchhHHHHHHHHHHHHh
Confidence 35899999999999999999999886 8999998653211000 00000000000 01112222
Q ss_pred --CCCcEEEEecCCCC--CC-C-CChh---HHHhhhHHHHHHHHHHHHhhcCCCcEEEEEeCChhhHHHHHHHHCCCCCC
Q 019990 80 --KDVNIAVMVGGFPR--KE-G-MERK---DVMSKNVSIYKAQASALEKHAAPNCKVLVVANPANTNALILKEFAPSIPA 150 (332)
Q Consensus 80 --~~aDiVi~~ag~~~--~~-~-~~~~---~~~~~N~~~~~~i~~~i~~~~~~~~~viv~snp~~~~~~~~~~~~~~~~~ 150 (332)
...|++|+.||... .+ . .+.+ ..+..|+.....+.+.+..+-.+.+.++++|+.... .+.+.
T Consensus 68 ~~g~iD~linnAG~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~m~~~g~Iv~isS~~~~---------~~~~~ 138 (235)
T d1ooea_ 68 QGSQVDGVFCVAGGWAGGSASSKDFVKNADLMIKQSVWSSAIAAKLATTHLKPGGLLQLTGAAAAM---------GPTPS 138 (235)
T ss_dssp TTCCEEEEEECCCCCCCBCTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEECCGGGG---------SCCTT
T ss_pred cCCCeeEEEECCcccccccccccCcHHHHhhHhhhHHHHHHHHhhhcccccccceEEEEeccHHhc---------CCccc
Confidence 34699999998632 11 1 1111 235667766655555555543334577777653221 22333
Q ss_pred CcEEEeecccHHHHHHHHHHHcCCCCCCeeee
Q 019990 151 KNITCLTRLDHNRAMGQISERLKVHVSDVKNV 182 (332)
Q Consensus 151 ~~i~~~t~l~~~r~~~~~a~~~~v~~~~v~~~ 182 (332)
.-.|+.+|-....|.+.+|..++-.+..|+..
T Consensus 139 ~~~Y~asKaal~~l~~~la~e~~~~~~~i~v~ 170 (235)
T d1ooea_ 139 MIGYGMAKAAVHHLTSSLAAKDSGLPDNSAVL 170 (235)
T ss_dssp BHHHHHHHHHHHHHHHHHHSTTSSCCTTCEEE
T ss_pred ccchHHHHHHHHHHHHHHHHHhccCCCceEEE
Confidence 33678888888888888988877556677753
|
| >d1luaa1 c.2.1.7 (A:98-288) Methylene-tetrahydromethanopterin dehydrogenase {Methylobacterium extorquens [TaxId: 408]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Methylene-tetrahydromethanopterin dehydrogenase species: Methylobacterium extorquens [TaxId: 408]
Probab=98.14 E-value=2.1e-06 Score=70.35 Aligned_cols=80 Identities=10% Similarity=0.106 Sum_probs=56.7
Q ss_pred CCcEEEEEcCCChhHHHHHHHHHhcccCCCCCCeEEEEEecccchhhhhhhHhhhhhh-ccC-CccceEEeCCHHHHhCC
Q 019990 4 NPLRVLVTGAAGQIGYALVPMIARGIMLGPDQPVILHMLDIEPAAEALNGVKMELIDA-AFP-LLKGVVATTDVVEACKD 81 (332)
Q Consensus 4 ~~~kI~VtGaaG~IGs~l~~~L~~~~~~~~~~~~~i~l~D~~~~~~~~~~~~~dl~~~-~~~-~~~~v~~~~~~~~a~~~ 81 (332)
+.++|+||||+|.||..++..|++.|. +|++++++. +++......+... ... ...++....++.+++.+
T Consensus 22 ~gK~vlItGasgGIG~~ia~~la~~G~-------~V~~~~r~~--~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~ 92 (191)
T d1luaa1 22 KGKKAVVLAGTGPVGMRSAALLAGEGA-------EVVLCGRKL--DKAQAAADSVNKRFKVNVTAAETADDASRAEAVKG 92 (191)
T ss_dssp TTCEEEEETTTSHHHHHHHHHHHHTTC-------EEEEEESSH--HHHHHHHHHHHHHHTCCCEEEECCSHHHHHHHTTT
T ss_pred CCCEEEEECCCHHHHHHHHHHHHhhcc-------chhhcccch--HHHHHHHHHHHhccchhhhhhhcccHHHHHHHhcC
Confidence 568999999999999999999999885 899999864 3444333333221 111 11234444566777899
Q ss_pred CcEEEEecCCC
Q 019990 82 VNIAVMVGGFP 92 (332)
Q Consensus 82 aDiVi~~ag~~ 92 (332)
+|+||+.||.+
T Consensus 93 iDilin~Ag~g 103 (191)
T d1luaa1 93 AHFVFTAGAIG 103 (191)
T ss_dssp CSEEEECCCTT
T ss_pred cCeeeecCccc
Confidence 99999999864
|
| >d1vl8a_ c.2.1.2 (A:) Gluconate 5-dehydrogenase {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Gluconate 5-dehydrogenase species: Thermotoga maritima [TaxId: 2336]
Probab=98.14 E-value=4.7e-06 Score=71.21 Aligned_cols=157 Identities=13% Similarity=0.152 Sum_probs=94.2
Q ss_pred CCcEEEEEcCCChhHHHHHHHHHhcccCCCCCCeEEEEEecccchhhhhhhHhhhhhh-c---cCCccceEEeCCHHHH-
Q 019990 4 NPLRVLVTGAAGQIGYALVPMIARGIMLGPDQPVILHMLDIEPAAEALNGVKMELIDA-A---FPLLKGVVATTDVVEA- 78 (332)
Q Consensus 4 ~~~kI~VtGaaG~IGs~l~~~L~~~~~~~~~~~~~i~l~D~~~~~~~~~~~~~dl~~~-~---~~~~~~v~~~~~~~~a- 78 (332)
+.+.++||||++.||.+++..|++.|. +|.+.|++. +.+.....++.+. . ..+..|++...++.+.
T Consensus 4 ~gK~~lITGas~GIG~aia~~la~~Ga-------~V~i~~r~~--~~~~~~~~~l~~~~g~~~~~~~~Dv~~~~~v~~~~ 74 (251)
T d1vl8a_ 4 RGRVALVTGGSRGLGFGIAQGLAEAGC-------SVVVASRNL--EEASEAAQKLTEKYGVETMAFRCDVSNYEEVKKLL 74 (251)
T ss_dssp TTCEEEEETTTSHHHHHHHHHHHHTTC-------EEEEEESCH--HHHHHHHHHHHHHHCCCEEEEECCTTCHHHHHHHH
T ss_pred CCCEEEEeCCCCHHHHHHHHHHHHCCC-------EEEEEECCH--HHHHHHHHHHHHHhCCcEEEEEccCCCHHHHHHHH
Confidence 467899999999999999999999986 899999864 3444444444321 1 1122344433333222
Q ss_pred ------hCCCcEEEEecCCCCCC---CCChhH---HHhhhHHHH----HHHHHHHHhhcCCCcEEEEEeCChhhHHHHHH
Q 019990 79 ------CKDVNIAVMVGGFPRKE---GMERKD---VMSKNVSIY----KAQASALEKHAAPNCKVLVVANPANTNALILK 142 (332)
Q Consensus 79 ------~~~aDiVi~~ag~~~~~---~~~~~~---~~~~N~~~~----~~i~~~i~~~~~~~~~viv~snp~~~~~~~~~ 142 (332)
+-..|++|+.||..... ..+.++ .++.|+... +.+++.+++. ..+.+|++++-...
T Consensus 75 ~~~~~~~g~iDiLVnnAG~~~~~~~~~~~~e~~~~~~~vNl~~~~~~~~~~~~~m~~~--~~G~Ii~i~S~~~~------ 146 (251)
T d1vl8a_ 75 EAVKEKFGKLDTVVNAAGINRRHPAEEFPLDEFRQVIEVNLFGTYYVCREAFSLLRES--DNPSIINIGSLTVE------ 146 (251)
T ss_dssp HHHHHHHSCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHTTC--SSCEEEEECCGGGT------
T ss_pred HHHHHHcCCCCEEEECCCCCCCCChhhCCHHHHHHHHHhhhhhhhhhhhhhhhccccc--ccccccccccchhc------
Confidence 34789999999974321 123322 455676555 4444455443 24577777652210
Q ss_pred HHCCCCCCCcEEEeecccHHHHHHHHHHHcCCCCCCeee
Q 019990 143 EFAPSIPAKNITCLTRLDHNRAMGQISERLKVHVSDVKN 181 (332)
Q Consensus 143 ~~~~~~~~~~i~~~t~l~~~r~~~~~a~~~~v~~~~v~~ 181 (332)
. .+.+....|+.+|-.-..+.+.+|..++ +..||.
T Consensus 147 ~--~~~~~~~~Y~asKaal~~lt~~lA~e~~--~~gIrV 181 (251)
T d1vl8a_ 147 E--VTMPNISAYAASKGGVASLTKALAKEWG--RYGIRV 181 (251)
T ss_dssp C--CCSSSCHHHHHHHHHHHHHHHHHHHHHG--GGTCEE
T ss_pred c--ccCccccchHHHHHhHHHHHHHHHHHhc--ccCeEE
Confidence 0 1222223577778777788888888765 455664
|
| >d1wdka3 c.2.1.6 (A:311-496) Fatty oxidation complex alpha subunit, middle domain {Pseudomonas fragi [TaxId: 296]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Fatty oxidation complex alpha subunit, middle domain species: Pseudomonas fragi [TaxId: 296]
Probab=98.14 E-value=3.4e-06 Score=68.80 Aligned_cols=105 Identities=20% Similarity=0.227 Sum_probs=68.3
Q ss_pred CCCcEEEEEcCCChhHHHHHHHHHhcccCCCCCCeEEEEEecccchhhhhhh---Hh-hhhhhc--cC--------Cccc
Q 019990 3 KNPLRVLVTGAAGQIGYALVPMIARGIMLGPDQPVILHMLDIEPAAEALNGV---KM-ELIDAA--FP--------LLKG 68 (332)
Q Consensus 3 ~~~~kI~VtGaaG~IGs~l~~~L~~~~~~~~~~~~~i~l~D~~~~~~~~~~~---~~-dl~~~~--~~--------~~~~ 68 (332)
++-+||+|+| +|.+|+.++..++..|+ +|+++|++.. .+... .. .+.+.. .. ....
T Consensus 2 ~~I~~vaViG-aG~mG~~iA~~~a~~G~-------~V~l~D~~~~--~l~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~ 71 (186)
T d1wdka3 2 KDVKQAAVLG-AGIMGGGIAYQSASKGT-------PILMKDINEH--GIEQGLAEAAKLLVGRVDKGRMTPAKMAEVLNG 71 (186)
T ss_dssp CCCSSEEEEC-CHHHHHHHHHHHHHTTC-------CEEEECSSHH--HHHHHHHHHHHHHHHHHTTTSSCHHHHHHHHHH
T ss_pred CCCCEEEEEC-cCHHHHHHHHHHHhCCC-------eEEEEECCHH--HHhhhhhhhhhhHHhhhcccccchhhhhhhhce
Confidence 4567899999 69999999999999886 8999998642 22211 11 111110 00 1134
Q ss_pred eEEeCCHHHHhCCCcEEEEecCCCCCCCCChhHHHhhhHHHHHHHHHHHHhhcCCCcEEEEEeCCh
Q 019990 69 VVATTDVVEACKDVNIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEKHAAPNCKVLVVANPA 134 (332)
Q Consensus 69 v~~~~~~~~a~~~aDiVi~~ag~~~~~~~~~~~~~~~N~~~~~~i~~~i~~~~~~~~~viv~snp~ 134 (332)
+....+. +++.+||+||-+.. .|.+.-+++...+.+++++++ |++||..
T Consensus 72 i~~~~~~-~~~~~adlViEav~--------------E~l~~K~~lf~~l~~~~~~~~--IiaSnTS 120 (186)
T d1wdka3 72 IRPTLSY-GDFGNVDLVVEAVV--------------ENPKVKQAVLAEVENHVREDA--ILASNTS 120 (186)
T ss_dssp EEEESSS-TTGGGCSEEEECCC--------------SCHHHHHHHHHHHHTTSCTTC--EEEECCS
T ss_pred eeccccc-ccccccceeeeeec--------------chHHHHHHHHHHHHhhcCCCe--eEEeccc
Confidence 5555554 56899999997531 124556788899999986664 5667744
|
| >d2ag5a1 c.2.1.2 (A:1-245) Dehydrogenase/reductase SDR family member 6, DHRS6 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Dehydrogenase/reductase SDR family member 6, DHRS6 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.14 E-value=2.4e-06 Score=72.87 Aligned_cols=158 Identities=16% Similarity=0.173 Sum_probs=94.8
Q ss_pred CCC-CCcEEEEEcCCChhHHHHHHHHHhcccCCCCCCeEEEEEecccchhhhhhhHhhhhhhccCCccceEEe---CCHH
Q 019990 1 MAK-NPLRVLVTGAAGQIGYALVPMIARGIMLGPDQPVILHMLDIEPAAEALNGVKMELIDAAFPLLKGVVAT---TDVV 76 (332)
Q Consensus 1 m~~-~~~kI~VtGaaG~IGs~l~~~L~~~~~~~~~~~~~i~l~D~~~~~~~~~~~~~dl~~~~~~~~~~v~~~---~~~~ 76 (332)
|.+ +.++++||||++.||++++..|++.|. +|++.|+++ +.++....... .. ....++... ....
T Consensus 1 m~~l~gK~alITGas~GIG~aia~~la~~G~-------~Vi~~~r~~--~~l~~~~~~~~-~~-~~~~d~~~~~~~~~~~ 69 (245)
T d2ag5a1 1 MGRLDGKVIILTAAAQGIGQAAALAFAREGA-------KVIATDINE--SKLQELEKYPG-IQ-TRVLDVTKKKQIDQFA 69 (245)
T ss_dssp CCTTTTCEEEESSTTSHHHHHHHHHHHHTTC-------EEEEEESCH--HHHGGGGGSTT-EE-EEECCTTCHHHHHHHH
T ss_pred CCCCCCCEEEEeCCCCHHHHHHHHHHHHcCC-------EEEEEeCCH--HHHHHHHhccC-Cc-eeeeeccccccccccc
Confidence 653 567899999999999999999999886 899999864 23332111110 00 001122111 1122
Q ss_pred HHhCCCcEEEEecCCCCCC---CCChhH---HHhhhHHHH----HHHHHHHHhhcCCCcEEEEEeCChhhHHHHHHHHCC
Q 019990 77 EACKDVNIAVMVGGFPRKE---GMERKD---VMSKNVSIY----KAQASALEKHAAPNCKVLVVANPANTNALILKEFAP 146 (332)
Q Consensus 77 ~a~~~aDiVi~~ag~~~~~---~~~~~~---~~~~N~~~~----~~i~~~i~~~~~~~~~viv~snp~~~~~~~~~~~~~ 146 (332)
+.+...|++|+.||..... ..+.++ .+..|+... +.+.+.+.+. +.+.++++++..... .
T Consensus 70 ~~~~~id~lVn~ag~~~~~~~~~~~~~~~~~~~~vn~~~~~~~~~~~~~~~~~~--~~g~Ii~isS~~~~~--------~ 139 (245)
T d2ag5a1 70 NEVERLDVLFNVAGFVHHGTVLDCEEKDWDFSMNLNVRSMYLMIKAFLPKMLAQ--KSGNIINMSSVASSV--------K 139 (245)
T ss_dssp HHCSCCSEEEECCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHH--TCEEEEEECCSBTTT--------B
T ss_pred cccccceeEEecccccCCCChhhCCHHHHHHHHHHhhccchhHHHhhCcccccC--CCceeeeeechhhcc--------C
Confidence 3356789999999875431 123322 345555444 4444445544 356777777643210 2
Q ss_pred CCCCCcEEEeecccHHHHHHHHHHHcCCCCCCeee
Q 019990 147 SIPAKNITCLTRLDHNRAMGQISERLKVHVSDVKN 181 (332)
Q Consensus 147 ~~~~~~i~~~t~l~~~r~~~~~a~~~~v~~~~v~~ 181 (332)
+++..-.|+.+|-.-..+.+.+|+.++ +..||.
T Consensus 140 ~~~~~~~Y~~sKaal~~l~r~lA~e~~--~~gIrv 172 (245)
T d2ag5a1 140 GVVNRCVYSTTKAAVIGLTKSVAADFI--QQGIRC 172 (245)
T ss_dssp CCTTBHHHHHHHHHHHHHHHHHHHHHG--GGTEEE
T ss_pred CccchhHHHHHHHHHHHHHHHHHHHhh--hhCcEE
Confidence 233334678888888888889998877 557774
|
| >d2bgka1 c.2.1.2 (A:11-278) Rhizome secoisolariciresinol dehydrogenase {Mayapple (Podophyllum peltatum) [TaxId: 35933]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Rhizome secoisolariciresinol dehydrogenase species: Mayapple (Podophyllum peltatum) [TaxId: 35933]
Probab=98.13 E-value=6.8e-06 Score=70.85 Aligned_cols=161 Identities=15% Similarity=0.058 Sum_probs=97.5
Q ss_pred CCcEEEEEcCCChhHHHHHHHHHhcccCCCCCCeEEEEEecccchhhhhhhHhhhhhhc--cCCccceEEeCCHHHH---
Q 019990 4 NPLRVLVTGAAGQIGYALVPMIARGIMLGPDQPVILHMLDIEPAAEALNGVKMELIDAA--FPLLKGVVATTDVVEA--- 78 (332)
Q Consensus 4 ~~~kI~VtGaaG~IGs~l~~~L~~~~~~~~~~~~~i~l~D~~~~~~~~~~~~~dl~~~~--~~~~~~v~~~~~~~~a--- 78 (332)
+.+.++||||++.||..++..|++.|. +|++.|++. +.++....++.... .....|++...++.+.
T Consensus 5 ~gKvalITGas~GIG~aia~~la~~Ga-------~V~i~~r~~--~~~~~~~~~l~~~~~~~~~~~Dv~~~~~v~~~~~~ 75 (268)
T d2bgka1 5 QDKVAIITGGAGGIGETTAKLFVRYGA-------KVVIADIAD--DHGQKVCNNIGSPDVISFVHCDVTKDEDVRNLVDT 75 (268)
T ss_dssp TTCEEEEESTTSHHHHHHHHHHHHTTC-------EEEEEESCH--HHHHHHHHHHCCTTTEEEEECCTTCHHHHHHHHHH
T ss_pred CCCEEEEeCCCcHHHHHHHHHHHHCCC-------EEEEEECCH--HHHHHHHHHhcCCCceEEEEccCCCHHHHHHHHHH
Confidence 457899999999999999999999886 899999864 34554444443211 0112344433333332
Q ss_pred ----hCCCcEEEEecCCCCC-C----CCChh---HHHhhhHHHH----HHHHHHHHhhcCCCcEEEEEeCChhhHHHHHH
Q 019990 79 ----CKDVNIAVMVGGFPRK-E----GMERK---DVMSKNVSIY----KAQASALEKHAAPNCKVLVVANPANTNALILK 142 (332)
Q Consensus 79 ----~~~aDiVi~~ag~~~~-~----~~~~~---~~~~~N~~~~----~~i~~~i~~~~~~~~~viv~snp~~~~~~~~~ 142 (332)
+-..|++|+.||.... + ..+.+ ..++.|+... +..++.+.+. ..+.++++++....
T Consensus 76 ~~~~~g~iD~lVnnAG~~~~~~~~~~~~~~~~~~~~~~vNl~g~~~~~~~~~~~m~~~--~~g~ii~iss~~~~------ 147 (268)
T d2bgka1 76 TIAKHGKLDIMFGNVGVLSTTPYSILEAGNEDFKRVMDINVYGAFLVAKHAARVMIPA--KKGSIVFTASISSF------ 147 (268)
T ss_dssp HHHHHSCCCEEEECCCCCCSSCSSTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHGGG--TCEEEEEECCGGGT------
T ss_pred HHHHcCCcceeccccccccCCCcccccCcHHHHHHHHHHhhcchhhhhhhhcchHhhc--CCCCcccccccccc------
Confidence 3478999999986321 1 22322 2455666554 4445555544 24566776653321
Q ss_pred HHCCCCCCCc-EEEeecccHHHHHHHHHHHcCCCCCCeeeeEEEec
Q 019990 143 EFAPSIPAKN-ITCLTRLDHNRAMGQISERLKVHVSDVKNVIIWGN 187 (332)
Q Consensus 143 ~~~~~~~~~~-i~~~t~l~~~r~~~~~a~~~~v~~~~v~~~~V~G~ 187 (332)
.+.++.. .|+.+|-.-..+.+.+|..++ +..||. +.+.+
T Consensus 148 ---~~~~~~~~~Y~asKaal~~lt~~lA~el~--~~gIrV-N~I~P 187 (268)
T d2bgka1 148 ---TAGEGVSHVYTATKHAVLGLTTSLCTELG--EYGIRV-NCVSP 187 (268)
T ss_dssp ---CCCTTSCHHHHHHHHHHHHHHHHHHHHHG--GGTEEE-EEEEE
T ss_pred ---ccccccccccchhHHHHHhCHHHHHHHhC--hhCeEE-EecCC
Confidence 1122222 567778778888888888876 566774 44454
|
| >d1ydea1 c.2.1.2 (A:4-253) Retinal dehydrogenase/reductase 3 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Retinal dehydrogenase/reductase 3 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.12 E-value=2.2e-06 Score=73.35 Aligned_cols=159 Identities=15% Similarity=0.079 Sum_probs=97.1
Q ss_pred CCcEEEEEcCCChhHHHHHHHHHhcccCCCCCCeEEEEEecccchhhhhhhHhhhhhhccCCccceEEeCCHHH------
Q 019990 4 NPLRVLVTGAAGQIGYALVPMIARGIMLGPDQPVILHMLDIEPAAEALNGVKMELIDAAFPLLKGVVATTDVVE------ 77 (332)
Q Consensus 4 ~~~kI~VtGaaG~IGs~l~~~L~~~~~~~~~~~~~i~l~D~~~~~~~~~~~~~dl~~~~~~~~~~v~~~~~~~~------ 77 (332)
+.+.++||||++.||.+++..|++.|. +|++.|++. +.++....++.... .+..|++...++.+
T Consensus 5 ~GK~alITGas~GIG~aia~~la~~Ga-------~V~i~~r~~--~~~~~~~~~~~~~~-~~~~Dvs~~~~v~~~~~~~~ 74 (250)
T d1ydea1 5 AGKVVVVTGGGRGIGAGIVRAFVNSGA-------RVVICDKDE--SGGRALEQELPGAV-FILCDVTQEDDVKTLVSETI 74 (250)
T ss_dssp TTCEEEEETCSSHHHHHHHHHHHHTTC-------EEEEEESCH--HHHHHHHHHCTTEE-EEECCTTSHHHHHHHHHHHH
T ss_pred CCCEEEEeCCCCHHHHHHHHHHHHCCC-------EEEEEECCH--HHHHHHHHhcCCCe-EEEccCCCHHHHHHHHHHHH
Confidence 357899999999999999999999886 899999864 34444333333221 12234433333222
Q ss_pred -HhCCCcEEEEecCCCCCC----CCChh---HHHhhhHHHH----HHHHHHHHhhcCCCcEEEEEeCChhhHHHHHHHHC
Q 019990 78 -ACKDVNIAVMVGGFPRKE----GMERK---DVMSKNVSIY----KAQASALEKHAAPNCKVLVVANPANTNALILKEFA 145 (332)
Q Consensus 78 -a~~~aDiVi~~ag~~~~~----~~~~~---~~~~~N~~~~----~~i~~~i~~~~~~~~~viv~snp~~~~~~~~~~~~ 145 (332)
.+-..|++|+.||..... ..+.+ ..++.|+... +..++.+++. .+.+|++++.... .
T Consensus 75 ~~~g~iDilVnnAG~~~~~~~~~~~~~~~~~~~~~vNl~g~~~~~~~~~p~m~~~---~G~Ii~isS~~~~-------~- 143 (250)
T d1ydea1 75 RRFGRLDCVVNNAGHHPPPQRPEETSAQGFRQLLELNLLGTYTLTKLALPYLRKS---QGNVINISSLVGA-------I- 143 (250)
T ss_dssp HHHSCCCEEEECCCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHH---TCEEEEECCHHHH-------H-
T ss_pred HhcCCCCEEEecccccccccccccccHHHHHHHHHHhhhhHHHHHHHhhHHHHhC---CCCCccccccccc-------c-
Confidence 234689999999863221 12322 2456665444 4555555543 2567777753221 1
Q ss_pred CCCCCCcEEEeecccHHHHHHHHHHHcCCCCCCeeeeEEEec
Q 019990 146 PSIPAKNITCLTRLDHNRAMGQISERLKVHVSDVKNVIIWGN 187 (332)
Q Consensus 146 ~~~~~~~i~~~t~l~~~r~~~~~a~~~~v~~~~v~~~~V~G~ 187 (332)
+.+..-.|+.+|-.-..+.+.+|+.++ +..||. +.+-+
T Consensus 144 -~~~~~~~Y~asKaal~~lt~~lA~e~a--~~gIrV-N~I~P 181 (250)
T d1ydea1 144 -GQAQAVPYVATKGAVTAMTKALALDES--PYGVRV-NCISP 181 (250)
T ss_dssp -CCTTCHHHHHHHHHHHHHHHHHHHHHG--GGTCEE-EEEEE
T ss_pred -cccCcchhHHHHhhHHHHHHHHHHHhc--ccCeEE-EEEee
Confidence 233334678888888888888888875 556774 44444
|
| >d2d1ya1 c.2.1.2 (A:2-249) Hypothetical protein TTHA0369 {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Hypothetical protein TTHA0369 species: Thermus thermophilus [TaxId: 274]
Probab=98.11 E-value=9.2e-06 Score=69.22 Aligned_cols=158 Identities=16% Similarity=0.104 Sum_probs=95.6
Q ss_pred CCcEEEEEcCCChhHHHHHHHHHhcccCCCCCCeEEEEEecccchhhhhhhHhhhhhhccCCccceEEeCCHH-------
Q 019990 4 NPLRVLVTGAAGQIGYALVPMIARGIMLGPDQPVILHMLDIEPAAEALNGVKMELIDAAFPLLKGVVATTDVV------- 76 (332)
Q Consensus 4 ~~~kI~VtGaaG~IGs~l~~~L~~~~~~~~~~~~~i~l~D~~~~~~~~~~~~~dl~~~~~~~~~~v~~~~~~~------- 76 (332)
+.+.++||||++.||.+++..|++.|. +|.+.|++.. ..+ ....+... .+..|++...+..
T Consensus 4 ~GK~alITGas~GIG~aia~~la~~G~-------~V~~~~~~~~--~~~-~~~~~~~~--~~~~Dv~~~~~v~~~~~~~~ 71 (248)
T d2d1ya1 4 AGKGVLVTGGARGIGRAIAQAFAREGA-------LVALCDLRPE--GKE-VAEAIGGA--FFQVDLEDERERVRFVEEAA 71 (248)
T ss_dssp TTCEEEEETTTSHHHHHHHHHHHHTTC-------EEEEEESSTT--HHH-HHHHHTCE--EEECCTTCHHHHHHHHHHHH
T ss_pred CCCEEEEeCCCCHHHHHHHHHHHHCCC-------EEEEEECCHH--HHH-HHHHcCCe--EEEEeCCCHHHHHHHHHHHH
Confidence 357899999999999999999999986 8999998642 211 11122111 1123443332222
Q ss_pred HHhCCCcEEEEecCCCCC---CCCChhH---HHhhhHHHHH----HHHHHHHhhcCCCcEEEEEeCChhhHHHHHHHHCC
Q 019990 77 EACKDVNIAVMVGGFPRK---EGMERKD---VMSKNVSIYK----AQASALEKHAAPNCKVLVVANPANTNALILKEFAP 146 (332)
Q Consensus 77 ~a~~~aDiVi~~ag~~~~---~~~~~~~---~~~~N~~~~~----~i~~~i~~~~~~~~~viv~snp~~~~~~~~~~~~~ 146 (332)
+.+-..|++|+.||.... ...+.++ .+..|+.... ..++.+++. ..+.+|++++.... .
T Consensus 72 ~~~G~iDiLVnnAG~~~~~~~~~~~~e~~~~~~~vNl~g~~~~~~~~~p~m~~~--~~G~Ii~isS~~~~---------~ 140 (248)
T d2d1ya1 72 YALGRVDVLVNNAAIAAPGSALTVRLPEWRRVLEVNLTAPMHLSALAAREMRKV--GGGAIVNVASVQGL---------F 140 (248)
T ss_dssp HHHSCCCEEEECCCCCCCBCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHTT--TCEEEEEECCGGGT---------S
T ss_pred HhcCCCCeEEEeCcCCCCCChhhCCHHHHHHHHHhhhhhHhhhhhhhccccccc--cccccccccccccc---------c
Confidence 224478999999987432 1223332 4566765554 444444443 35677777764321 2
Q ss_pred CCCCCcEEEeecccHHHHHHHHHHHcCCCCCCeeeeEEEec
Q 019990 147 SIPAKNITCLTRLDHNRAMGQISERLKVHVSDVKNVIIWGN 187 (332)
Q Consensus 147 ~~~~~~i~~~t~l~~~r~~~~~a~~~~v~~~~v~~~~V~G~ 187 (332)
+.+....|+.+|-.-..+.+.+|+.++ +..||. +.+-+
T Consensus 141 ~~~~~~~Y~asKaal~~ltk~lA~el~--~~gIrV-N~I~P 178 (248)
T d2d1ya1 141 AEQENAAYNASKGGLVNLTRSLALDLA--PLRIRV-NAVAP 178 (248)
T ss_dssp BCTTBHHHHHHHHHHHHHHHHHHHHHG--GGTEEE-EEEEE
T ss_pred cccccchhHHHHHHHHHHHHHHHHHhh--hhCcEE-EEEee
Confidence 233333577788778888888888876 566774 43444
|
| >d2f1ka2 c.2.1.6 (A:1-165) Prephenate dehydrogenase TyrA {Synechocystis sp. pcc 6803 [TaxId: 1148]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Prephenate dehydrogenase TyrA species: Synechocystis sp. pcc 6803 [TaxId: 1148]
Probab=98.11 E-value=1.9e-05 Score=62.59 Aligned_cols=91 Identities=20% Similarity=0.214 Sum_probs=56.7
Q ss_pred cEEEEEcCCChhHHHHHHHHHhcccCCCCCCeEEEEEecccchhhhhhhHhhhhhhccCCccceEEeCCHHHHhCCCcEE
Q 019990 6 LRVLVTGAAGQIGYALVPMIARGIMLGPDQPVILHMLDIEPAAEALNGVKMELIDAAFPLLKGVVATTDVVEACKDVNIA 85 (332)
Q Consensus 6 ~kI~VtGaaG~IGs~l~~~L~~~~~~~~~~~~~i~l~D~~~~~~~~~~~~~dl~~~~~~~~~~v~~~~~~~~a~~~aDiV 85 (332)
|||+|+| +|.+|++++..|.+.++ +|..+|++. +.++ ...+.. ..+ . ..+..++++++|+|
T Consensus 1 MkI~iIG-~G~mG~~lA~~l~~~g~-------~V~~~d~~~--~~~~-~a~~~~------~~~-~-~~~~~~~~~~~DiI 61 (165)
T d2f1ka2 1 MKIGVVG-LGLIGASLAGDLRRRGH-------YLIGVSRQQ--STCE-KAVERQ------LVD-E-AGQDLSLLQTAKII 61 (165)
T ss_dssp CEEEEEC-CSHHHHHHHHHHHHTTC-------EEEEECSCH--HHHH-HHHHTT------SCS-E-EESCGGGGTTCSEE
T ss_pred CEEEEEe-ecHHHHHHHHHHHHCCC-------EEEEEECCc--hHHH-HHHHhh------ccc-e-eeeecccccccccc
Confidence 6899999 79999999999998886 899999863 2221 111110 011 1 12234678999999
Q ss_pred EEecCCCCCCCCChhHHHhhhHHHHHHHHHHHHhhcCCCcEEEEEe
Q 019990 86 VMVGGFPRKEGMERKDVMSKNVSIYKAQASALEKHAAPNCKVLVVA 131 (332)
Q Consensus 86 i~~ag~~~~~~~~~~~~~~~N~~~~~~i~~~i~~~~~~~~~viv~s 131 (332)
|++. | ...+.++++.+..+..++..++-.+
T Consensus 62 ilav--p--------------~~~~~~vl~~l~~~l~~~~iv~~~~ 91 (165)
T d2f1ka2 62 FLCT--P--------------IQLILPTLEKLIPHLSPTAIVTDVA 91 (165)
T ss_dssp EECS--C--------------HHHHHHHHHHHGGGSCTTCEEEECC
T ss_pred cccC--c--------------Hhhhhhhhhhhhhhcccccceeecc
Confidence 8753 1 1224456666766654555444343
|
| >d1xkqa_ c.2.1.2 (A:) Hypothetical protein R05D8.7 {Caenorhabditis elegans [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Hypothetical protein R05D8.7 species: Caenorhabditis elegans [TaxId: 6239]
Probab=98.10 E-value=5.3e-06 Score=71.73 Aligned_cols=161 Identities=11% Similarity=0.092 Sum_probs=94.1
Q ss_pred CCcEEEEEcCCChhHHHHHHHHHhcccCCCCCCeEEEEEecccchhhhhhhHhhhhhhcc------CCccceEEeCCHHH
Q 019990 4 NPLRVLVTGAAGQIGYALVPMIARGIMLGPDQPVILHMLDIEPAAEALNGVKMELIDAAF------PLLKGVVATTDVVE 77 (332)
Q Consensus 4 ~~~kI~VtGaaG~IGs~l~~~L~~~~~~~~~~~~~i~l~D~~~~~~~~~~~~~dl~~~~~------~~~~~v~~~~~~~~ 77 (332)
+.+.++||||++-||.+++..|++.|. +|.+.|++. +.++....++..... ....|++...+..+
T Consensus 4 ~gK~alVTGas~GIG~aia~~la~~Ga-------~V~l~~r~~--~~l~~~~~~l~~~~~~~~~~~~~~~Dvs~~~~v~~ 74 (272)
T d1xkqa_ 4 SNKTVIITGSSNGIGRTTAILFAQEGA-------NVTITGRSS--ERLEETRQIILKSGVSEKQVNSVVADVTTEDGQDQ 74 (272)
T ss_dssp TTCEEEETTCSSHHHHHHHHHHHHTTC-------EEEEEESCH--HHHHHHHHHHHTTTCCGGGEEEEECCTTSHHHHHH
T ss_pred CCCEEEEeCcCcHHHHHHHHHHHHCCC-------EEEEEECCH--HHHHHHHHHHHhcCCCCCceEEEEccCCCHHHHHH
Confidence 457899999999999999999999886 899999864 455554455543211 11234433322222
Q ss_pred -------HhCCCcEEEEecCCCCCC-------CCChh---HHHhhhHHHH----HHHHHHHHhhcCCCcEEEEEeCChhh
Q 019990 78 -------ACKDVNIAVMVGGFPRKE-------GMERK---DVMSKNVSIY----KAQASALEKHAAPNCKVLVVANPANT 136 (332)
Q Consensus 78 -------a~~~aDiVi~~ag~~~~~-------~~~~~---~~~~~N~~~~----~~i~~~i~~~~~~~~~viv~snp~~~ 136 (332)
.+-..|++|+.||..... +.+.. ..++.|+... +..++.+++. ...+ |+.++....
T Consensus 75 ~~~~~~~~~g~iDilvnnAG~~~~~~~~~~~~d~~~~~~~~~~~vNl~~~~~~~~~~~p~m~~~--~g~i-I~~~Ss~a~ 151 (272)
T d1xkqa_ 75 IINSTLKQFGKIDVLVNNAGAAIPDAFGTTGTDQGIDIYHKTLKLNLQAVIEMTKKVKPHLVAS--KGEI-VNVSSIVAG 151 (272)
T ss_dssp HHHHHHHHHSCCCEEEECCCCCCCCTTCCCGGGSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHH--TCEE-EEECCGGGS
T ss_pred HHHHHHHHhCCceEEEeCCcccCcccccccchhccHHHHHHHHHhhhhHHHHHHHhhccccccc--CCcc-ccccchhcc
Confidence 234689999999874321 11211 2345565544 4444455443 2334 444432211
Q ss_pred HHHHHHHHCCCCCCCcEEEeecccHHHHHHHHHHHcCCCCCCeeeeEEEec
Q 019990 137 NALILKEFAPSIPAKNITCLTRLDHNRAMGQISERLKVHVSDVKNVIIWGN 187 (332)
Q Consensus 137 ~~~~~~~~~~~~~~~~i~~~t~l~~~r~~~~~a~~~~v~~~~v~~~~V~G~ 187 (332)
. .+.+..-.|+.+|-.-..+.+.+|..++ +..||. +.+-+
T Consensus 152 ~--------~~~~~~~~Y~asKaal~~ltk~lA~el~--~~gIrV-N~I~P 191 (272)
T d1xkqa_ 152 P--------QAQPDFLYYAIAKAALDQYTRSTAIDLA--KFGIRV-NSVSP 191 (272)
T ss_dssp S--------SCCCSSHHHHHHHHHHHHHHHHHHHHHH--TTTCEE-EEEEE
T ss_pred c--------cCCCCcchhhhHHHHHHHHHHHHHHHhc--ccCeEE-EEEee
Confidence 0 1233333577778777888888888865 456774 44443
|
| >d1yb1a_ c.2.1.2 (A:) 17-beta-hydroxysteroid dehydrogenase type XI {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 17-beta-hydroxysteroid dehydrogenase type XI species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.09 E-value=7.9e-06 Score=69.47 Aligned_cols=158 Identities=21% Similarity=0.233 Sum_probs=93.2
Q ss_pred CCcEEEEEcCCChhHHHHHHHHHhcccCCCCCCeEEEEEecccchhhhhhhHhhhhhhcc---CCccceEEeCCHHH---
Q 019990 4 NPLRVLVTGAAGQIGYALVPMIARGIMLGPDQPVILHMLDIEPAAEALNGVKMELIDAAF---PLLKGVVATTDVVE--- 77 (332)
Q Consensus 4 ~~~kI~VtGaaG~IGs~l~~~L~~~~~~~~~~~~~i~l~D~~~~~~~~~~~~~dl~~~~~---~~~~~v~~~~~~~~--- 77 (332)
..+.++||||++-||.+++..|++.|. +|.+.|++. ++++....++..... ....|++...++.+
T Consensus 6 ~Gkv~lITGas~GIG~~ia~~la~~G~-------~V~l~~r~~--~~l~~~~~~~~~~~~~~~~~~~Dvs~~~~v~~~~~ 76 (244)
T d1yb1a_ 6 TGEIVLITGAGHGIGRLTAYEFAKLKS-------KLVLWDINK--HGLEETAAKCKGLGAKVHTFVVDCSNREDIYSSAK 76 (244)
T ss_dssp TTCEEEEETTTSHHHHHHHHHHHHTTC-------EEEEEESCH--HHHHHHHHHHHHTTCCEEEEECCTTCHHHHHHHHH
T ss_pred CCCEEEEeCCCcHHHHHHHHHHHHCCC-------EEEEEECCH--HHHHHHHHHHHhcCCcEEEEEeeCCCHHHHHHHHH
Confidence 457799999999999999999999986 899999864 455555555543211 12234444333322
Q ss_pred ----HhCCCcEEEEecCCCCCCCC---Ch---hHHHhhhHHH----HHHHHHHHHhhcCCCcEEEEEeCChhhHHHHHHH
Q 019990 78 ----ACKDVNIAVMVGGFPRKEGM---ER---KDVMSKNVSI----YKAQASALEKHAAPNCKVLVVANPANTNALILKE 143 (332)
Q Consensus 78 ----a~~~aDiVi~~ag~~~~~~~---~~---~~~~~~N~~~----~~~i~~~i~~~~~~~~~viv~snp~~~~~~~~~~ 143 (332)
.+-..|++|+.||....... +. ++.+..|+.. ++.+++.+.+. ..+++|++++.....
T Consensus 77 ~i~~~~g~idilinnag~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~lp~m~~~--~~G~Iv~isS~~~~~------ 148 (244)
T d1yb1a_ 77 KVKAEIGDVSILVNNAGVVYTSDLFATQDPQIEKTFEVNVLAHFWTTKAFLPAMTKN--NHGHIVTVASAAGHV------ 148 (244)
T ss_dssp HHHHHTCCCSEEEECCCCCCCCCCGGGHHHHHHHHHHHHTHHHHHHHHHHHHHHHHT--TCEEEEEECCCC-CC------
T ss_pred HHHHHcCCCceeEeeccccccccccccchhHHHhhcceeeeccHHHHHHHhhhHHhc--CCceEEEeecchhcC------
Confidence 24468999999987532211 11 2345556543 35556666664 356777777643211
Q ss_pred HCCCCCCCcEEEeecccHHHHHHHHHHHcC-CCCCCeee
Q 019990 144 FAPSIPAKNITCLTRLDHNRAMGQISERLK-VHVSDVKN 181 (332)
Q Consensus 144 ~~~~~~~~~i~~~t~l~~~r~~~~~a~~~~-v~~~~v~~ 181 (332)
+.|..-.|+.+|-.-..+...++..+. .+...|+.
T Consensus 149 ---~~~~~~~Y~asKaal~~~~~~La~El~~~~~~gI~V 184 (244)
T d1yb1a_ 149 ---SVPFLLAYCSSKFAAVGFHKTLTDELAALQITGVKT 184 (244)
T ss_dssp ---CHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCTTEEE
T ss_pred ---CCCCcHHHHHHHHHHHHHHHHHHHHHHhhcCCCEEE
Confidence 011111345666666677777776653 23355664
|
| >d2rhca1 c.2.1.2 (A:5-261) beta-keto acyl carrier protein reductase {Streptomyces coelicolor [TaxId: 1902]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: beta-keto acyl carrier protein reductase species: Streptomyces coelicolor [TaxId: 1902]
Probab=98.09 E-value=8.2e-06 Score=69.87 Aligned_cols=161 Identities=14% Similarity=0.111 Sum_probs=99.0
Q ss_pred cEEEEEcCCChhHHHHHHHHHhcccCCCCCCeEEEEEecccchhhhhhhHhhhhhhcc---CCccceEEeCCHHHH----
Q 019990 6 LRVLVTGAAGQIGYALVPMIARGIMLGPDQPVILHMLDIEPAAEALNGVKMELIDAAF---PLLKGVVATTDVVEA---- 78 (332)
Q Consensus 6 ~kI~VtGaaG~IGs~l~~~L~~~~~~~~~~~~~i~l~D~~~~~~~~~~~~~dl~~~~~---~~~~~v~~~~~~~~a---- 78 (332)
+.++||||++-||.+++..|++.|. +|.+.|++. +.++....++..... .+..|++...++.+.
T Consensus 3 KValITGas~GIG~aia~~la~~Ga-------~V~i~~r~~--~~l~~~~~~l~~~g~~~~~~~~Dvs~~~~v~~~~~~~ 73 (257)
T d2rhca1 3 EVALVTGATSGIGLEIARRLGKEGL-------RVFVCARGE--EGLRTTLKELREAGVEADGRTCDVRSVPEIEALVAAV 73 (257)
T ss_dssp CEEEEESCSSHHHHHHHHHHHHTTC-------EEEEEESCH--HHHHHHHHHHHHTTCCEEEEECCTTCHHHHHHHHHHH
T ss_pred CEEEEeCCCCHHHHHHHHHHHHCCC-------EEEEEECCH--HHHHHHHHHHHhcCCcEEEEEeecCCHHHHHHHHHHH
Confidence 3458999999999999999999986 899999863 455555555543211 122344443333222
Q ss_pred ---hCCCcEEEEecCCCCCC---CCChh---HHHhhhHHHHHHHHHHHHhh----cCCCcEEEEEeCChhhHHHHHHHHC
Q 019990 79 ---CKDVNIAVMVGGFPRKE---GMERK---DVMSKNVSIYKAQASALEKH----AAPNCKVLVVANPANTNALILKEFA 145 (332)
Q Consensus 79 ---~~~aDiVi~~ag~~~~~---~~~~~---~~~~~N~~~~~~i~~~i~~~----~~~~~~viv~snp~~~~~~~~~~~~ 145 (332)
+-..|++|+.||..... ..+.+ ..++.|+...-.+.+++..+ ....+.++++++....
T Consensus 74 ~~~~g~iDilVnnAG~~~~~~~~~~~~e~~~~~~~vNl~g~~~~~~~~~p~~~~~~~~~g~Ii~i~S~~~~--------- 144 (257)
T d2rhca1 74 VERYGPVDVLVNNAGRPGGGATAELADELWLDVVETNLTGVFRVTKQVLKAGGMLERGTGRIVNIASTGGK--------- 144 (257)
T ss_dssp HHHTCSCSEEEECCCCCCCSCGGGCCHHHHHHHHHHHTHHHHHHHHHHHTTTSHHHHTEEEEEEECCGGGT---------
T ss_pred HHHhCCCCEEEecccccCCCChHHcCHHHHHHHHHHHhhhhhHHHHHHhHHHHHHhcCCcccccccccccc---------
Confidence 34689999999975321 12222 35677877776666655432 1123566666643221
Q ss_pred CCCCCCcEEEeecccHHHHHHHHHHHcCCCCCCeeeeEEEec
Q 019990 146 PSIPAKNITCLTRLDHNRAMGQISERLKVHVSDVKNVIIWGN 187 (332)
Q Consensus 146 ~~~~~~~i~~~t~l~~~r~~~~~a~~~~v~~~~v~~~~V~G~ 187 (332)
.+.+..-.|+.+|-.-..+.+.+|..++ +..||. +.+-+
T Consensus 145 ~~~~~~~~Y~asKaal~~ltk~lA~el~--~~gIrV-N~I~P 183 (257)
T d2rhca1 145 QGVVHAAPYSASKHGVVGFTKALGLELA--RTGITV-NAVCP 183 (257)
T ss_dssp SCCTTCHHHHHHHHHHHHHHHHHHHHTT--TSEEEE-EEEEE
T ss_pred cccccchhHHHHHHHHHHHHHHHHHHhh--hhCcEE-EEEee
Confidence 2233333577788878888888998876 556874 44444
|
| >d2gdza1 c.2.1.2 (A:3-256) 15-hydroxyprostaglandin dehydrogenase, PGDH {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 15-hydroxyprostaglandin dehydrogenase, PGDH species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.08 E-value=7.4e-06 Score=70.05 Aligned_cols=161 Identities=16% Similarity=0.123 Sum_probs=93.0
Q ss_pred CCcEEEEEcCCChhHHHHHHHHHhcccCCCCCCeEEEEEecccchhhhhhhHhhhhhhc-----cCCccceEEeCCHHHH
Q 019990 4 NPLRVLVTGAAGQIGYALVPMIARGIMLGPDQPVILHMLDIEPAAEALNGVKMELIDAA-----FPLLKGVVATTDVVEA 78 (332)
Q Consensus 4 ~~~kI~VtGaaG~IGs~l~~~L~~~~~~~~~~~~~i~l~D~~~~~~~~~~~~~dl~~~~-----~~~~~~v~~~~~~~~a 78 (332)
+.+.++||||++-||.+++..|++.|. +|.+.|++. +.+.....++.... .....|++...++.+.
T Consensus 2 ~GKvalITGas~GIG~aia~~la~~Ga-------~V~i~~r~~--~~~~~~~~~l~~~~~~~~~~~~~~Dv~~~~~v~~~ 72 (254)
T d2gdza1 2 NGKVALVTGAAQGIGRAFAEALLLKGA-------KVALVDWNL--EAGVQCKAALHEQFEPQKTLFIQCDVADQQQLRDT 72 (254)
T ss_dssp TTCEEEEETTTSHHHHHHHHHHHHTTC-------EEEEEESCH--HHHHHHHHHHTTTSCGGGEEEEECCTTSHHHHHHH
T ss_pred CCCEEEEeCCCCHHHHHHHHHHHHCCC-------EEEEEECCH--HHHHHHHHHHHHhcCCCcEEEEEeecCCHHHHHHH
Confidence 467899999999999999999999886 899999864 34444444443210 1112344433333222
Q ss_pred -------hCCCcEEEEecCCCCCCCCChhHHHhhhHHH----HHHHHHHHHhhcC-CCcEEEEEeCChhhHHHHHHHHCC
Q 019990 79 -------CKDVNIAVMVGGFPRKEGMERKDVMSKNVSI----YKAQASALEKHAA-PNCKVLVVANPANTNALILKEFAP 146 (332)
Q Consensus 79 -------~~~aDiVi~~ag~~~~~~~~~~~~~~~N~~~----~~~i~~~i~~~~~-~~~~viv~snp~~~~~~~~~~~~~ 146 (332)
+-..|++|+.||.... .+-++.++.|+.. ++..++.+.+... ..+.+|++|+.... .
T Consensus 73 ~~~~~~~~G~iDilVnnAg~~~~--~~~~~~~~~n~~~~~~~~~~~~~~m~~~~~~~~g~Iv~isS~~~~---------~ 141 (254)
T d2gdza1 73 FRKVVDHFGRLDILVNNAGVNNE--KNWEKTLQINLVSVISGTYLGLDYMSKQNGGEGGIIINMSSLAGL---------M 141 (254)
T ss_dssp HHHHHHHHSCCCEEEECCCCCCS--SSHHHHHHHHTHHHHHHHHHHHHHHCGGGTCCCEEEEEECCGGGT---------S
T ss_pred HHHHHHHcCCcCeeccccccccc--ccchheeeeehhhHHHHHHHHHHHHHHhhcCCCcEEEeeccHhhc---------c
Confidence 3468999999997543 2334456666543 4555555554421 23567777754321 1
Q ss_pred CCCCCcEEEeecccHHHHHHH--HHHHcCCCCCCeeeeEEEec
Q 019990 147 SIPAKNITCLTRLDHNRAMGQ--ISERLKVHVSDVKNVIIWGN 187 (332)
Q Consensus 147 ~~~~~~i~~~t~l~~~r~~~~--~a~~~~v~~~~v~~~~V~G~ 187 (332)
+.+....|+.+|-.-..+.+. +|..+ .+..||. +.+-+
T Consensus 142 ~~~~~~~Y~asKaal~~ltrs~ala~e~--~~~gIrV-N~I~P 181 (254)
T d2gdza1 142 PVAQQPVYCASKHGIVGFTRSAALAANL--MNSGVRL-NAICP 181 (254)
T ss_dssp CCTTCHHHHHHHHHHHHHHHHHHHHHHH--HTCCEEE-EEEEE
T ss_pred CCCCccchHHHHHHHHHHHHHHHHHHHh--cCCCEEE-EEEEc
Confidence 233333566666655555442 45443 3456774 44444
|
| >d1ae1a_ c.2.1.2 (A:) Tropinone reductase {Jimsonweed (Datura stramonium), I [TaxId: 4076]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Tropinone reductase species: Jimsonweed (Datura stramonium), I [TaxId: 4076]
Probab=98.06 E-value=5e-06 Score=71.34 Aligned_cols=161 Identities=16% Similarity=0.174 Sum_probs=96.4
Q ss_pred CCcEEEEEcCCChhHHHHHHHHHhcccCCCCCCeEEEEEecccchhhhhhhHhhhhhhcc---CCccceEEeCCHHH---
Q 019990 4 NPLRVLVTGAAGQIGYALVPMIARGIMLGPDQPVILHMLDIEPAAEALNGVKMELIDAAF---PLLKGVVATTDVVE--- 77 (332)
Q Consensus 4 ~~~kI~VtGaaG~IGs~l~~~L~~~~~~~~~~~~~i~l~D~~~~~~~~~~~~~dl~~~~~---~~~~~v~~~~~~~~--- 77 (332)
+.++++||||++.||.+++..|++.|. +|++.|++. +.++....++..... .+..|++...++.+
T Consensus 5 ~gK~alITGas~GIG~aia~~la~~G~-------~V~i~~r~~--~~l~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~ 75 (258)
T d1ae1a_ 5 KGTTALVTGGSKGIGYAIVEELAGLGA-------RVYTCSRNE--KELDECLEIWREKGLNVEGSVCDLLSRTERDKLMQ 75 (258)
T ss_dssp TTCEEEEESCSSHHHHHHHHHHHHTTC-------EEEEEESCH--HHHHHHHHHHHHTTCCEEEEECCTTCHHHHHHHHH
T ss_pred CCCEEEEeCCCCHHHHHHHHHHHHCCC-------EEEEEECCH--HHHHHHHHHHHhcCCCceEEEeecCCHHHHHHHHH
Confidence 467899999999999999999999986 899999864 344444344433211 11234433333222
Q ss_pred ----HhC-CCcEEEEecCCCCCC---CCChhH---HHhhhHHHH----HHHHHHHHhhcCCCcEEEEEeCChhhHHHHHH
Q 019990 78 ----ACK-DVNIAVMVGGFPRKE---GMERKD---VMSKNVSIY----KAQASALEKHAAPNCKVLVVANPANTNALILK 142 (332)
Q Consensus 78 ----a~~-~aDiVi~~ag~~~~~---~~~~~~---~~~~N~~~~----~~i~~~i~~~~~~~~~viv~snp~~~~~~~~~ 142 (332)
.+. ..|++|+.||..... ..+.++ .+..|+... +.+...+.+. +.+.++++++....
T Consensus 76 ~~~~~~~g~idilinnag~~~~~~~~~~~~~~~~~~~~~nl~~~~~~~~~~~~~m~~~--~~g~ii~isS~~~~------ 147 (258)
T d1ae1a_ 76 TVAHVFDGKLNILVNNAGVVIHKEAKDFTEKDYNIIMGTNFEAAYHLSQIAYPLLKAS--QNGNVIFLSSIAGF------ 147 (258)
T ss_dssp HHHHHTTSCCCEEEECCCCCCCCCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHH--TSEEEEEECCGGGT------
T ss_pred HHHHHhCCCcEEEeccccccccCccccCCHHHHhhhhhhccccccccccccccccccc--cccccccccccccc------
Confidence 221 378999999875321 123222 344554433 4444455554 35677777754331
Q ss_pred HHCCCCCCCcEEEeecccHHHHHHHHHHHcCCCCCCeeeeEEEec
Q 019990 143 EFAPSIPAKNITCLTRLDHNRAMGQISERLKVHVSDVKNVIIWGN 187 (332)
Q Consensus 143 ~~~~~~~~~~i~~~t~l~~~r~~~~~a~~~~v~~~~v~~~~V~G~ 187 (332)
.+.+....|+.++-.-..+.+.+|+.++ +..||. +.+-+
T Consensus 148 ---~~~~~~~~Y~~sK~al~~lt~~lA~el~--~~gIrv-N~I~P 186 (258)
T d1ae1a_ 148 ---SALPSVSLYSASKGAINQMTKSLACEWA--KDNIRV-NSVAP 186 (258)
T ss_dssp ---SCCTTCHHHHHHHHHHHHHHHHHHHHHG--GGTEEE-EEEEE
T ss_pred ---cccccchhHHHHHHHHHHHHHHHHHhcC--cCcEEE-EEEee
Confidence 2333334567777777888888888877 466773 43444
|
| >d1n1ea2 c.2.1.6 (A:9-197) Glycerol-3- phosphate dehydrogenase {Trypanosome (Leishmania mexicana) [TaxId: 5665]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Glycerol-3- phosphate dehydrogenase species: Trypanosome (Leishmania mexicana) [TaxId: 5665]
Probab=98.06 E-value=4.8e-06 Score=68.03 Aligned_cols=71 Identities=20% Similarity=0.282 Sum_probs=53.3
Q ss_pred CCcEEEEEcCCChhHHHHHHHHHhcccCCCCCCeEEEEEecccchhhhhhhHhhhh--hhc------cCCccceEEeCCH
Q 019990 4 NPLRVLVTGAAGQIGYALVPMIARGIMLGPDQPVILHMLDIEPAAEALNGVKMELI--DAA------FPLLKGVVATTDV 75 (332)
Q Consensus 4 ~~~kI~VtGaaG~IGs~l~~~L~~~~~~~~~~~~~i~l~D~~~~~~~~~~~~~dl~--~~~------~~~~~~v~~~~~~ 75 (332)
.|+||+|+| +|..|++++..|...+. +|.+++++. +.++ .+. +.+ ..+..++..+.++
T Consensus 6 ~m~KI~ViG-aG~wGtAlA~~La~~g~-------~V~l~~r~~--~~~~----~i~~~~~n~~yl~~~~l~~~i~~t~~l 71 (189)
T d1n1ea2 6 YLNKAVVFG-SGAFGTALAMVLSKKCR-------EVCVWHMNE--EEVR----LVNEKRENVLFLKGVQLASNITFTSDV 71 (189)
T ss_dssp CEEEEEEEC-CSHHHHHHHHHHHTTEE-------EEEEECSCH--HHHH----HHHHHTBCTTTSTTCBCCTTEEEESCH
T ss_pred eeceEEEEC-CCHHHHHHHHHHHHcCC-------eEEEEEecH--HHHH----HHhhcccccccccccccccccccchhh
Confidence 456899999 69999999999998875 899999753 2222 221 111 1224678888999
Q ss_pred HHHhCCCcEEEEe
Q 019990 76 VEACKDVNIAVMV 88 (332)
Q Consensus 76 ~~a~~~aDiVi~~ 88 (332)
.++++++|+||++
T Consensus 72 ~~a~~~ad~iiia 84 (189)
T d1n1ea2 72 EKAYNGAEIILFV 84 (189)
T ss_dssp HHHHTTCSCEEEC
T ss_pred hhccCCCCEEEEc
Confidence 9999999999986
|
| >d1edoa_ c.2.1.2 (A:) beta-keto acyl carrier protein reductase {Oil seed rape (Brassica napus) [TaxId: 3708]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: beta-keto acyl carrier protein reductase species: Oil seed rape (Brassica napus) [TaxId: 3708]
Probab=98.03 E-value=9.8e-06 Score=68.86 Aligned_cols=159 Identities=14% Similarity=0.127 Sum_probs=96.5
Q ss_pred EEEEEcCCChhHHHHHHHHHhcccCCCCCCeEEEEEecccchhhhhhhHhhhhhhc---cCCccceEEeCCHHHH-----
Q 019990 7 RVLVTGAAGQIGYALVPMIARGIMLGPDQPVILHMLDIEPAAEALNGVKMELIDAA---FPLLKGVVATTDVVEA----- 78 (332)
Q Consensus 7 kI~VtGaaG~IGs~l~~~L~~~~~~~~~~~~~i~l~D~~~~~~~~~~~~~dl~~~~---~~~~~~v~~~~~~~~a----- 78 (332)
-|+||||++.||.+++..|++.|. +|++.|.+. .+.++....++.... ..+..|++...+..+.
T Consensus 3 V~lITGas~GIG~a~a~~la~~Ga-------~V~i~~~~~-~~~~~~~~~~~~~~g~~~~~~~~Dv~~~~~v~~~~~~~~ 74 (244)
T d1edoa_ 3 VVVVTGASRGIGKAIALSLGKAGC-------KVLVNYARS-AKAAEEVSKQIEAYGGQAITFGGDVSKEADVEAMMKTAI 74 (244)
T ss_dssp EEEETTCSSHHHHHHHHHHHHTTC-------EEEEEESSC-HHHHHHHHHHHHHHTCEEEEEECCTTSHHHHHHHHHHHH
T ss_pred EEEEeCCCcHHHHHHHHHHHHCCC-------EEEEEeCCC-HHHHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHHHHH
Confidence 478999999999999999999886 788877643 223433333333211 1122344433333222
Q ss_pred --hCCCcEEEEecCCCCCC---CCChh---HHHhhhHHHH----HHHHHHHHhhcCCCcEEEEEeCChhhHHHHHHHHCC
Q 019990 79 --CKDVNIAVMVGGFPRKE---GMERK---DVMSKNVSIY----KAQASALEKHAAPNCKVLVVANPANTNALILKEFAP 146 (332)
Q Consensus 79 --~~~aDiVi~~ag~~~~~---~~~~~---~~~~~N~~~~----~~i~~~i~~~~~~~~~viv~snp~~~~~~~~~~~~~ 146 (332)
+...|++|+.||..... ..+.+ ..++.|+... +..++.+.+. ..+.+|++|+-... .
T Consensus 75 ~~~g~iDiLVnnAg~~~~~~~~~~~~~~~~~~~~vNl~~~~~~~~~~~~~m~~~--~~G~IVnisS~~~~---------~ 143 (244)
T d1edoa_ 75 DAWGTIDVVVNNAGITRDTLLIRMKKSQWDEVIDLNLTGVFLCTQAATKIMMKK--RKGRIINIASVVGL---------I 143 (244)
T ss_dssp HHSSCCSEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHH--TCEEEEEECCTHHH---------H
T ss_pred HHcCCCCccccccccccccchhccchHHHHHHHhhhhhhHHHHHHHHHHHHHHc--CCcEEEEEcChhhc---------C
Confidence 34689999999874322 12222 2455665444 5555555554 35788888764321 1
Q ss_pred CCCCCcEEEeecccHHHHHHHHHHHcCCCCCCeeeeEEEec
Q 019990 147 SIPAKNITCLTRLDHNRAMGQISERLKVHVSDVKNVIIWGN 187 (332)
Q Consensus 147 ~~~~~~i~~~t~l~~~r~~~~~a~~~~v~~~~v~~~~V~G~ 187 (332)
+.+....|+.+|-.-..+.+.+|..++ +..||. +.+-+
T Consensus 144 ~~~~~~~Y~asKaal~~ltk~lA~el~--~~gIrv-N~I~P 181 (244)
T d1edoa_ 144 GNIGQANYAAAKAGVIGFSKTAAREGA--SRNINV-NVVCP 181 (244)
T ss_dssp CCTTCHHHHHHHHHHHHHHHHHHHHHH--TTTEEE-EEEEE
T ss_pred CCCCCHHHHHHHHHHHHChHHHHHHHh--hhCcEE-EEEec
Confidence 233334678888888888888998876 566774 44443
|
| >d1ulua_ c.2.1.2 (A:) Enoyl-ACP reductase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Enoyl-ACP reductase species: Thermus thermophilus [TaxId: 274]
Probab=98.03 E-value=3.7e-06 Score=72.02 Aligned_cols=162 Identities=14% Similarity=0.150 Sum_probs=93.6
Q ss_pred CCcEEEEEcCCC--hhHHHHHHHHHhcccCCCCCCeEEEEEecccchhhhhhhHhhhhhhc---cCCccceEEeCCHHH-
Q 019990 4 NPLRVLVTGAAG--QIGYALVPMIARGIMLGPDQPVILHMLDIEPAAEALNGVKMELIDAA---FPLLKGVVATTDVVE- 77 (332)
Q Consensus 4 ~~~kI~VtGaaG--~IGs~l~~~L~~~~~~~~~~~~~i~l~D~~~~~~~~~~~~~dl~~~~---~~~~~~v~~~~~~~~- 77 (332)
+.++++||||+| -||.+++..|++.|. +|++.|+++. ......++.... ..+..|++...+..+
T Consensus 7 ~gK~alITGas~~~GIG~aiA~~la~~Ga-------~V~i~~~~~~---~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~ 76 (256)
T d1ulua_ 7 SGKKALVMGVTNQRSLGFAIAAKLKEAGA-------EVALSYQAER---LRPEAEKLAEALGGALLFRADVTQDEELDAL 76 (256)
T ss_dssp TTCEEEEESCCCSSSHHHHHHHHHHHTTC-------EEEEEESSGG---GHHHHHHHHHHTTCCEEEECCTTCHHHHHHH
T ss_pred CCCEEEEECCCCCchHHHHHHHHHHHCCC-------EEEEEeCcHH---HHHHHHHhhhccCcccccccccCCHHHHHHH
Confidence 457899999987 699999999999886 8888887532 222222222111 111233333322222
Q ss_pred ------HhCCCcEEEEecCCCCC-------CCCChhH---HHhhhHHHHHHHHHHHHhhcCCCcEEEEEeCChhhHHHHH
Q 019990 78 ------ACKDVNIAVMVGGFPRK-------EGMERKD---VMSKNVSIYKAQASALEKHAAPNCKVLVVANPANTNALIL 141 (332)
Q Consensus 78 ------a~~~aDiVi~~ag~~~~-------~~~~~~~---~~~~N~~~~~~i~~~i~~~~~~~~~viv~snp~~~~~~~~ 141 (332)
.+-..|++|+.||.... ...+..+ .+..|+.....+.+.+...-.+++.+|++++....
T Consensus 77 ~~~~~~~~g~iDilVnnag~~~~~~~~~~~~~~~~~~~~~~~~vn~~~~~~~~~~~~~~~~~~G~Iv~isS~~~~----- 151 (256)
T d1ulua_ 77 FAGVKEAFGGLDYLVHAIAFAPREAMEGRYIDTRRQDWLLALEVSAYSLVAVARRAEPLLREGGGIVTLTYYASE----- 151 (256)
T ss_dssp HHHHHHHHSSEEEEEECCCCCCHHHHSSCGGGCCHHHHHHHHHHHTHHHHHHHHHHTTTEEEEEEEEEEECGGGT-----
T ss_pred HHHHHHhcCCceEEEeccccccccccccchhhhhhhhhhHhhhhhHHHHHHHHHHHHHHhccCCEEEEEeehHhc-----
Confidence 23468999999986321 1122222 34556665555555554432234566777653221
Q ss_pred HHHCCCCCCCcEEEeecccHHHHHHHHHHHcCCCCCCeeeeEEEec
Q 019990 142 KEFAPSIPAKNITCLTRLDHNRAMGQISERLKVHVSDVKNVIIWGN 187 (332)
Q Consensus 142 ~~~~~~~~~~~i~~~t~l~~~r~~~~~a~~~~v~~~~v~~~~V~G~ 187 (332)
.+.|....|+.+|-.-..+.+.+|..++ +..||. +.+.+
T Consensus 152 ----~~~~~~~~Y~asKaal~~ltr~lA~ela--~~gIrV-N~I~P 190 (256)
T d1ulua_ 152 ----KVVPKYNVMAIAKAALEASVRYLAYELG--PKGVRV-NAISA 190 (256)
T ss_dssp ----SBCTTCHHHHHHHHHHHHHHHHHHHHHG--GGTCEE-EEEEE
T ss_pred ----CCCCCchHHHHHHHHHHHHHHHHHHHhc--ccCCEE-eeecc
Confidence 1233334567777777888888888876 566773 44444
|
| >d1xq1a_ c.2.1.2 (A:) Tropinone reductase {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Tropinone reductase species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=98.03 E-value=6.1e-06 Score=70.82 Aligned_cols=161 Identities=16% Similarity=0.098 Sum_probs=93.0
Q ss_pred CCcEEEEEcCCChhHHHHHHHHHhcccCCCCCCeEEEEEecccchhhhhhhHhhhhhhcc---CCccceEEeCCHHH---
Q 019990 4 NPLRVLVTGAAGQIGYALVPMIARGIMLGPDQPVILHMLDIEPAAEALNGVKMELIDAAF---PLLKGVVATTDVVE--- 77 (332)
Q Consensus 4 ~~~kI~VtGaaG~IGs~l~~~L~~~~~~~~~~~~~i~l~D~~~~~~~~~~~~~dl~~~~~---~~~~~v~~~~~~~~--- 77 (332)
+.++++||||++.||.+++..|++.|. +|++.|++. +.++....++..... ....|++...+..+
T Consensus 7 kgK~alVTGas~GIG~aiA~~la~~Ga-------~V~~~~r~~--~~l~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~ 77 (259)
T d1xq1a_ 7 KAKTVLVTGGTKGIGHAIVEEFAGFGA-------VIHTCARNE--YELNECLSKWQKKGFQVTGSVCDASLRPEREKLMQ 77 (259)
T ss_dssp TTCEEEETTTTSHHHHHHHHHHHHTTC-------EEEEEESCH--HHHHHHHHHHHHTTCCEEEEECCTTSHHHHHHHHH
T ss_pred CCCEEEEeCCCCHHHHHHHHHHHHCCC-------EEEEEECCH--HHHHHHHHHHHhcCCceEEEeccCCCHHHHHHHHH
Confidence 467899999999999999999999886 899999864 345544444433211 11234433222222
Q ss_pred ----HhC-CCcEEEEecCCCCC---CCCChh---HHHhhhHHHH----HHHHHHHHhhcCCCcEEEEEeCChhhHHHHHH
Q 019990 78 ----ACK-DVNIAVMVGGFPRK---EGMERK---DVMSKNVSIY----KAQASALEKHAAPNCKVLVVANPANTNALILK 142 (332)
Q Consensus 78 ----a~~-~aDiVi~~ag~~~~---~~~~~~---~~~~~N~~~~----~~i~~~i~~~~~~~~~viv~snp~~~~~~~~~ 142 (332)
.+. ..|++|+.||.... ...+.+ ..++.|+... +..++.+++.. .+.+|++|+.....
T Consensus 78 ~~~~~~~g~idilvnnAG~~~~~~~~~~~~~~~~~~~~vNl~g~~~~~~~~~~~m~~~~--~G~Iv~isS~~~~~----- 150 (259)
T d1xq1a_ 78 TVSSMFGGKLDILINNLGAIRSKPTLDYTAEDFSFHISTNLESAYHLSQLAHPLLKASG--CGNIIFMSSIAGVV----- 150 (259)
T ss_dssp HHHHHHTTCCSEEEEECCC------CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS--SCEEEEEC-----------
T ss_pred HHHHHhCCCcccccccccccCCCchhhCCHHHHHHHHHHHhhhheeeehhhhhcccccc--cccccccccccccc-----
Confidence 232 37999999987432 122332 2456676554 44455555543 46777777533211
Q ss_pred HHCCCCCCCcEEEeecccHHHHHHHHHHHcCCCCCCeeeeEEEec
Q 019990 143 EFAPSIPAKNITCLTRLDHNRAMGQISERLKVHVSDVKNVIIWGN 187 (332)
Q Consensus 143 ~~~~~~~~~~i~~~t~l~~~r~~~~~a~~~~v~~~~v~~~~V~G~ 187 (332)
+.+....|+.+|-.-..+.+.+|..++ +..||. +.+-+
T Consensus 151 ----~~~~~~~Y~asKaal~~lt~~lA~e~~--~~gIrV-N~V~P 188 (259)
T d1xq1a_ 151 ----SASVGSIYSATKGALNQLARNLACEWA--SDGIRA-NAVAP 188 (259)
T ss_dssp --------CCHHHHHHHHHHHHHHHHHHHHG--GGTCEE-EEEEC
T ss_pred ----cccccccccccccchhhhhHHHHHHhc--ccCeEE-EEecc
Confidence 122233567778777888888888865 456774 44444
|
| >d1txga2 c.2.1.6 (A:1-180) Glycerol-3- phosphate dehydrogenase {Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Glycerol-3- phosphate dehydrogenase species: Archaeoglobus fulgidus [TaxId: 2234]
Probab=98.03 E-value=1.2e-05 Score=65.02 Aligned_cols=101 Identities=12% Similarity=0.101 Sum_probs=61.5
Q ss_pred cEEEEEcCCChhHHHHHHHHHhcccCCCCCCeEEEEEecccchhhhhhhHhhhhhhccC--C-ccceEEeCCHHHHhCCC
Q 019990 6 LRVLVTGAAGQIGYALVPMIARGIMLGPDQPVILHMLDIEPAAEALNGVKMELIDAAFP--L-LKGVVATTDVVEACKDV 82 (332)
Q Consensus 6 ~kI~VtGaaG~IGs~l~~~L~~~~~~~~~~~~~i~l~D~~~~~~~~~~~~~dl~~~~~~--~-~~~v~~~~~~~~a~~~a 82 (332)
|||+|+| +|..|++++..|...+. +|.++.+..+.+........-.+.... . ..++..+.++.++++++
T Consensus 1 MkI~ViG-aG~~GtalA~~la~~g~-------~V~l~~r~~~~~~~~~i~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~a 72 (180)
T d1txga2 1 MIVSILG-AGAMGSALSVPLVDNGN-------EVRIWGTEFDTEILKSISAGREHPRLGVKLNGVEIFWPEQLEKCLENA 72 (180)
T ss_dssp CEEEEES-CCHHHHHHHHHHHHHCC-------EEEEECCGGGHHHHHHHHTTCCBTTTTBCCCSEEEECGGGHHHHHTTC
T ss_pred CEEEEEC-CCHHHHHHHHHHHHCCC-------EEEEEEecccHHHHHHHhhhhhhhhhcchhccccccccccHHHHHhcc
Confidence 6899999 69999999999998875 899997643222221111100111111 1 13455567888999999
Q ss_pred cEEEEecCCCCCCCCChhHHHhhhHHHHHHHHHHHHhhcCCCcEEEEEe
Q 019990 83 NIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEKHAAPNCKVLVVA 131 (332)
Q Consensus 83 DiVi~~ag~~~~~~~~~~~~~~~N~~~~~~i~~~i~~~~~~~~~viv~s 131 (332)
|+||++. |. ..++++++.+..+- ++..+++.+
T Consensus 73 d~Ii~av--ps--------------~~~~~~~~~l~~~l-~~~~ii~~t 104 (180)
T d1txga2 73 EVVLLGV--ST--------------DGVLPVMSRILPYL-KDQYIVLIS 104 (180)
T ss_dssp SEEEECS--CG--------------GGHHHHHHHHTTTC-CSCEEEECC
T ss_pred chhhccc--ch--------------hhhHHHHHhhcccc-ccceecccc
Confidence 9999853 21 12345666666665 333444444
|
| >d1yxma1 c.2.1.2 (A:7-303) Peroxisomal trans 2-enoyl CoA reductase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Peroxisomal trans 2-enoyl CoA reductase species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.99 E-value=1e-05 Score=70.77 Aligned_cols=160 Identities=18% Similarity=0.127 Sum_probs=95.4
Q ss_pred CCcEEEEEcCCChhHHHHHHHHHhcccCCCCCCeEEEEEecccchhhhhhhHhhhhhhc--------cCCccceEEeCCH
Q 019990 4 NPLRVLVTGAAGQIGYALVPMIARGIMLGPDQPVILHMLDIEPAAEALNGVKMELIDAA--------FPLLKGVVATTDV 75 (332)
Q Consensus 4 ~~~kI~VtGaaG~IGs~l~~~L~~~~~~~~~~~~~i~l~D~~~~~~~~~~~~~dl~~~~--------~~~~~~v~~~~~~ 75 (332)
+.+.++||||++-||.+++..|++.|. +|++.|++. +.++....++.... ..+..|++...++
T Consensus 11 ~gKvalITGas~GIG~aia~~la~~Ga-------~Vvi~~r~~--~~l~~~~~el~~~~~~~~~~~~~~~~~Dvs~~~~v 81 (297)
T d1yxma1 11 QGQVAIVTGGATGIGKAIVKELLELGS-------NVVIASRKL--ERLKSAADELQANLPPTKQARVIPIQCNIRNEEEV 81 (297)
T ss_dssp TTCEEEEETTTSHHHHHHHHHHHHTTC-------EEEEEESCH--HHHHHHHHHHHHTSCTTCCCCEEEEECCTTCHHHH
T ss_pred CCCEEEEeCCCCHHHHHHHHHHHHCCC-------EEEEEECCH--HHHHHHHHHHHhhhccccCceEEEEeccCCCHHHH
Confidence 357899999999999999999999886 899999864 34554444553210 0112344333333
Q ss_pred HHH-------hCCCcEEEEecCCCCCC---CCChh---HHHhhhHHHHH----HHHHHHHhhcCCCcEEEEEeCChhhHH
Q 019990 76 VEA-------CKDVNIAVMVGGFPRKE---GMERK---DVMSKNVSIYK----AQASALEKHAAPNCKVLVVANPANTNA 138 (332)
Q Consensus 76 ~~a-------~~~aDiVi~~ag~~~~~---~~~~~---~~~~~N~~~~~----~i~~~i~~~~~~~~~viv~snp~~~~~ 138 (332)
.+. +...|++|+.||..... ..+.+ ..++.|+...- .+++.+.+.. ...++++|....
T Consensus 82 ~~~~~~~~~~~G~iDiLVnnAg~~~~~~~~~~~~e~~~~~~~vNl~g~~~~~~~~~~~m~~~~--~g~Ii~~ss~~~--- 156 (297)
T d1yxma1 82 NNLVKSTLDTFGKINFLVNNGGGQFLSPAEHISSKGWHAVLETNLTGTFYMCKAVYSSWMKEH--GGSIVNIIVPTK--- 156 (297)
T ss_dssp HHHHHHHHHHHSCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHTHHHH--CEEEEEECCCCT---
T ss_pred HHHHHHHHHHhCCeEEEEeeccccccCchhhhhhhhhhhhhcccccchhhHHHHHHHhhcccc--cccccccccccc---
Confidence 222 34689999999874321 12222 34566765544 4444444443 345555554321
Q ss_pred HHHHHHCCCCCCCcEEEeecccHHHHHHHHHHHcCCCCCCeeeeEEEec
Q 019990 139 LILKEFAPSIPAKNITCLTRLDHNRAMGQISERLKVHVSDVKNVIIWGN 187 (332)
Q Consensus 139 ~~~~~~~~~~~~~~i~~~t~l~~~r~~~~~a~~~~v~~~~v~~~~V~G~ 187 (332)
...|..-.|+.+|-.-..+.+.+|..++ +..||. +.+-+
T Consensus 157 -------~~~~~~~~Y~asKaal~~ltk~lA~el~--~~gIrV-N~I~P 195 (297)
T d1yxma1 157 -------AGFPLAVHSGAARAGVYNLTKSLALEWA--CSGIRI-NCVAP 195 (297)
T ss_dssp -------TCCTTCHHHHHHHHHHHHHHHHHHHHTG--GGTEEE-EEEEE
T ss_pred -------ccccccccchhHHHHHHHHHHHHHHHhc--ccCceE-EEeee
Confidence 1233333566677777788888888875 566774 44454
|
| >d1o5ia_ c.2.1.2 (A:) beta-keto acyl carrier protein reductase {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: beta-keto acyl carrier protein reductase species: Thermotoga maritima [TaxId: 2336]
Probab=97.99 E-value=1.5e-05 Score=67.14 Aligned_cols=155 Identities=14% Similarity=0.113 Sum_probs=92.0
Q ss_pred CCcEEEEEcCCChhHHHHHHHHHhcccCCCCCCeEEEEEecccchhhhhhhHhhhhhhccCCccceEE-eCCHHHHhCCC
Q 019990 4 NPLRVLVTGAAGQIGYALVPMIARGIMLGPDQPVILHMLDIEPAAEALNGVKMELIDAAFPLLKGVVA-TTDVVEACKDV 82 (332)
Q Consensus 4 ~~~kI~VtGaaG~IGs~l~~~L~~~~~~~~~~~~~i~l~D~~~~~~~~~~~~~dl~~~~~~~~~~v~~-~~~~~~a~~~a 82 (332)
+.++++||||++.||.+++..|++.|. +|.+.|++. +.++.. .+. ....|++. ...+.+.+...
T Consensus 3 kgK~~lVTGas~GIG~aia~~l~~~Ga-------~V~~~~r~~--~~l~~~----~~~--~~~~Dv~~~~~~~~~~~g~i 67 (234)
T d1o5ia_ 3 RDKGVLVLAASRGIGRAVADVLSQEGA-------EVTICARNE--ELLKRS----GHR--YVVCDLRKDLDLLFEKVKEV 67 (234)
T ss_dssp TTCEEEEESCSSHHHHHHHHHHHHTTC-------EEEEEESCH--HHHHHT----CSE--EEECCTTTCHHHHHHHSCCC
T ss_pred CCCEEEEeCCCcHHHHHHHHHHHHCCC-------EEEEEECCH--HHHHhc----CCc--EEEcchHHHHHHHHHHhCCC
Confidence 457899999999999999999999886 899999853 223211 110 01122211 11244556789
Q ss_pred cEEEEecCCCCCC---CCChhH---HHhhhHHH----HHHHHHHHHhhcCCCcEEEEEeCChhhHHHHHHHHCCCCCCCc
Q 019990 83 NIAVMVGGFPRKE---GMERKD---VMSKNVSI----YKAQASALEKHAAPNCKVLVVANPANTNALILKEFAPSIPAKN 152 (332)
Q Consensus 83 DiVi~~ag~~~~~---~~~~~~---~~~~N~~~----~~~i~~~i~~~~~~~~~viv~snp~~~~~~~~~~~~~~~~~~~ 152 (332)
|++|+.||.+... ..+.++ .++.|+.. ++.+++.+++. ..+.++++++.... .+.+..-
T Consensus 68 D~lVnnAG~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~m~~~--~~G~ii~i~S~~~~---------~~~~~~~ 136 (234)
T d1o5ia_ 68 DILVLNAGGPKAGFFDELTNEDFKEAIDSLFLNMIKIVRNYLPAMKEK--GWGRIVAITSFSVI---------SPIENLY 136 (234)
T ss_dssp SEEEECCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHH--TCEEEEEECCGGGT---------SCCTTBH
T ss_pred cEEEecccccCCcchhhhhhHHHHHHhhhhhhhhhhhhhccccccccc--cccccccccccccc---------ccccccc
Confidence 9999999975432 123222 34556543 45555666654 34566766653211 1222223
Q ss_pred EEEeecccHHHHHHHHHHHcCCCCCCeeeeEEEec
Q 019990 153 ITCLTRLDHNRAMGQISERLKVHVSDVKNVIIWGN 187 (332)
Q Consensus 153 i~~~t~l~~~r~~~~~a~~~~v~~~~v~~~~V~G~ 187 (332)
.|+.+|-.-..+.+.+|+.++ +..||. +.+-+
T Consensus 137 ~Y~asKaal~~ltk~lA~ela--~~gIrV-N~I~P 168 (234)
T d1o5ia_ 137 TSNSARMALTGFLKTLSFEVA--PYGITV-NCVAP 168 (234)
T ss_dssp HHHHHHHHHHHHHHHHHHHHG--GGTEEE-EEEEE
T ss_pred cchhHHHHHHHHHHHHHHHhc--ccCeEE-eeccc
Confidence 456667666777788888775 456774 44443
|
| >d1h5qa_ c.2.1.2 (A:) Mannitol dehydrogenase {Mushroom (Agaricus bisporus) [TaxId: 5341]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Mannitol dehydrogenase species: Mushroom (Agaricus bisporus) [TaxId: 5341]
Probab=97.98 E-value=2.2e-06 Score=73.72 Aligned_cols=172 Identities=11% Similarity=0.042 Sum_probs=95.6
Q ss_pred CCCCCcEEEEEcCCChhHHHHHHHHHhcccCCCCCCeEEEEEecccchhhhhhhHhhhhhh-c---cCCccceEEeCCHH
Q 019990 1 MAKNPLRVLVTGAAGQIGYALVPMIARGIMLGPDQPVILHMLDIEPAAEALNGVKMELIDA-A---FPLLKGVVATTDVV 76 (332)
Q Consensus 1 m~~~~~kI~VtGaaG~IGs~l~~~L~~~~~~~~~~~~~i~l~D~~~~~~~~~~~~~dl~~~-~---~~~~~~v~~~~~~~ 76 (332)
|+-+.++++||||++.||.+++..|++.|. +|.+.|++.. .+.....++... . ..+..|++...++.
T Consensus 5 m~l~gK~alITGas~GIG~aia~~la~~Ga-------~V~i~~r~~~--~~~~~~~~~~~~~g~~~~~~~~Dv~~~~~v~ 75 (260)
T d1h5qa_ 5 ISFVNKTIIVTGGNRGIGLAFTRAVAAAGA-------NVAVIYRSAA--DAVEVTEKVGKEFGVKTKAYQCDVSNTDIVT 75 (260)
T ss_dssp ECCTTEEEEEETTTSHHHHHHHHHHHHTTE-------EEEEEESSCT--THHHHHHHHHHHHTCCEEEEECCTTCHHHHH
T ss_pred ccCCCCEEEEeCCCCHHHHHHHHHHHHCCC-------EEEEEECCHH--HHHHHHHHHHHHhCCceEEEEccCCCHHHHH
Confidence 444678899999999999999999999986 8999998652 333333333221 1 11223444433332
Q ss_pred HH-------hCCCcEEEEecCCCCCC---CCChh---HHHhhhHHHH----HHHHHHHHhhcCCCcEEEEEeCChhhHHH
Q 019990 77 EA-------CKDVNIAVMVGGFPRKE---GMERK---DVMSKNVSIY----KAQASALEKHAAPNCKVLVVANPANTNAL 139 (332)
Q Consensus 77 ~a-------~~~aDiVi~~ag~~~~~---~~~~~---~~~~~N~~~~----~~i~~~i~~~~~~~~~viv~snp~~~~~~ 139 (332)
+. +-..|++|+.||..... ..+.+ ..+..|+... +.+++.+.+.. ....+++.+........
T Consensus 76 ~~~~~~~~~~g~iDilVnnAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~m~~~~-~~g~i~~~~s~~~~~~~ 154 (260)
T d1h5qa_ 76 KTIQQIDADLGPISGLIANAGVSVVKPATELTHEDFAFVYDVNVFGVFNTCRAVAKLWLQKQ-QKGSIVVTSSMSSQIIN 154 (260)
T ss_dssp HHHHHHHHHSCSEEEEEECCCCCCCSCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHT-CCEEEEEECCGGGTSCC
T ss_pred HHHHHHHHHhCCCcEecccccccccCCHHHhccccccccccccccchhhhhhhhcccccccc-cceEEEEeecccccccc
Confidence 22 33689999999874321 12322 2456666544 44455554443 34455555543211000
Q ss_pred HHHHHCCCCCCCcEEEeecccHHHHHHHHHHHcCCCCCCeeeeEEEec
Q 019990 140 ILKEFAPSIPAKNITCLTRLDHNRAMGQISERLKVHVSDVKNVIIWGN 187 (332)
Q Consensus 140 ~~~~~~~~~~~~~i~~~t~l~~~r~~~~~a~~~~v~~~~v~~~~V~G~ 187 (332)
. ... .+.+....|+.+|-.-..+.+.+|..++ +..||. +.+-+
T Consensus 155 ~-~~~-~~~~~~~~Y~asKaal~~lt~~lA~el~--~~gIrv-N~I~P 197 (260)
T d1h5qa_ 155 Q-SSL-NGSLTQVFYNSSKAACSNLVKGLAAEWA--SAGIRV-NALSP 197 (260)
T ss_dssp E-EET-TEECSCHHHHHHHHHHHHHHHHHHHHHG--GGTEEE-EEEEE
T ss_pred c-ccc-ccCccccchhhhhhhHHHHHHHHHHHhc--hhCeEE-eecCC
Confidence 0 000 0011122466677777788888888775 556774 44443
|
| >d1xhla_ c.2.1.2 (A:) Hypothetical protein F25D1.5 {Caenorhabditis elegans [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Hypothetical protein F25D1.5 species: Caenorhabditis elegans [TaxId: 6239]
Probab=97.95 E-value=1e-05 Score=69.95 Aligned_cols=161 Identities=14% Similarity=0.113 Sum_probs=94.2
Q ss_pred CCcEEEEEcCCChhHHHHHHHHHhcccCCCCCCeEEEEEecccchhhhhhhHhhhhhhcc------CCccceEEeCCHHH
Q 019990 4 NPLRVLVTGAAGQIGYALVPMIARGIMLGPDQPVILHMLDIEPAAEALNGVKMELIDAAF------PLLKGVVATTDVVE 77 (332)
Q Consensus 4 ~~~kI~VtGaaG~IGs~l~~~L~~~~~~~~~~~~~i~l~D~~~~~~~~~~~~~dl~~~~~------~~~~~v~~~~~~~~ 77 (332)
+.++++||||++-||.+++..|++.|. +|++.|++. +.++....++..... .+..|++...++.+
T Consensus 3 ~gK~alITGas~GIG~aia~~la~~Ga-------~V~~~~r~~--~~l~~~~~~i~~~~~~~~~~~~~~~Dv~~~~~v~~ 73 (274)
T d1xhla_ 3 SGKSVIITGSSNGIGRSAAVIFAKEGA-------QVTITGRNE--DRLEETKQQILKAGVPAEKINAVVADVTEASGQDD 73 (274)
T ss_dssp TTCEEEETTCSSHHHHHHHHHHHHTTC-------EEEEEESCH--HHHHHHHHHHHHTTCCGGGEEEEECCTTSHHHHHH
T ss_pred CCCEEEEeCCCcHHHHHHHHHHHHCCC-------EEEEEECCH--HHHHHHHHHHHHcCCCCcceEEEEeeCCCHHHHHH
Confidence 357899999999999999999999886 899999864 455555555543211 11234443333322
Q ss_pred H-------hCCCcEEEEecCCCCCCC-----CChh---HHHhhhHHHH----HHHHHHHHhhcCCCcEEEEEeCChhhHH
Q 019990 78 A-------CKDVNIAVMVGGFPRKEG-----MERK---DVMSKNVSIY----KAQASALEKHAAPNCKVLVVANPANTNA 138 (332)
Q Consensus 78 a-------~~~aDiVi~~ag~~~~~~-----~~~~---~~~~~N~~~~----~~i~~~i~~~~~~~~~viv~snp~~~~~ 138 (332)
. +-..|++|+.||.....+ .+.+ ..++.|+... +..++.+.+. ....+++.|.-...
T Consensus 74 ~~~~~~~~~G~iDilVnnAG~~~~~~~~~~~~~~e~~~~~~~vNl~~~~~~~~~~~~~m~~~--~~g~ii~~ss~~~~-- 149 (274)
T d1xhla_ 74 IINTTLAKFGKIDILVNNAGANLADGTANTDQPVELYQKTFKLNFQAVIEMTQKTKEHLIKT--KGEIVNVSSIVAGP-- 149 (274)
T ss_dssp HHHHHHHHHSCCCEEEECCCCCCCCSCCGGGSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHT--TCEEEEECCGGGSS--
T ss_pred HHHHHHHHcCCceEEEeecccccccccccccCCHHHHHHHHhhccccccccccccccccccc--ccccccchhhhhcc--
Confidence 2 336899999998642211 1222 2455666554 4444444443 34555554431110
Q ss_pred HHHHHHCCCCCCCcEEEeecccHHHHHHHHHHHcCCCCCCeeeeEEEec
Q 019990 139 LILKEFAPSIPAKNITCLTRLDHNRAMGQISERLKVHVSDVKNVIIWGN 187 (332)
Q Consensus 139 ~~~~~~~~~~~~~~i~~~t~l~~~r~~~~~a~~~~v~~~~v~~~~V~G~ 187 (332)
.+.+....|+.+|-.-..+.+.+|..++ +..||. +.+-+
T Consensus 150 -------~~~~~~~~Y~asKaal~~ltk~lA~ela--~~gIrV-N~I~P 188 (274)
T d1xhla_ 150 -------QAHSGYPYYACAKAALDQYTRCTAIDLI--QHGVRV-NSVSP 188 (274)
T ss_dssp -------SCCTTSHHHHHHHHHHHHHHHHHHHHHG--GGTCEE-EEEEE
T ss_pred -------ccCCCCceehhhhhHHHHHHHHHHHHHh--HhCCce-eeecc
Confidence 1223233567777777788888888875 456763 43343
|
| >d1ja9a_ c.2.1.2 (A:) 1,3,6,8-tetrahydroxynaphthalene reductase {Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 1,3,6,8-tetrahydroxynaphthalene reductase species: Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]
Probab=97.95 E-value=6.9e-06 Score=70.42 Aligned_cols=164 Identities=14% Similarity=0.084 Sum_probs=94.2
Q ss_pred CcEEEEEcCCChhHHHHHHHHHhcccCCCCCCeEEEEEecccchhhhhhhHhhhhhhc---cCCccceEEeCCHHH----
Q 019990 5 PLRVLVTGAAGQIGYALVPMIARGIMLGPDQPVILHMLDIEPAAEALNGVKMELIDAA---FPLLKGVVATTDVVE---- 77 (332)
Q Consensus 5 ~~kI~VtGaaG~IGs~l~~~L~~~~~~~~~~~~~i~l~D~~~~~~~~~~~~~dl~~~~---~~~~~~v~~~~~~~~---- 77 (332)
.+.++||||++-||.+++..|++.|. +|++.+.+. .+.++....++.... ..+..|++...+..+
T Consensus 6 GK~alITGas~GIG~aia~~la~~G~-------~Vvi~~~~~-~~~~~~~~~~~~~~g~~~~~~~~D~~~~~~v~~~~~~ 77 (259)
T d1ja9a_ 6 GKVALTTGAGRGIGRGIAIELGRRGA-------SVVVNYGSS-SKAAEEVVAELKKLGAQGVAIQADISKPSEVVALFDK 77 (259)
T ss_dssp TCEEEETTTTSHHHHHHHHHHHHTTC-------EEEEEESSC-HHHHHHHHHHHHHTTCCEEEEECCTTSHHHHHHHHHH
T ss_pred CCEEEEeCCCCHHHHHHHHHHHHcCC-------EEEEEcCCC-hHHHHHHHHHHHHcCCCceEecCCCCCHHHHHHHHHH
Confidence 46789999999999999999999986 788765543 223333333443321 112233333222222
Q ss_pred ---HhCCCcEEEEecCCCCCCC---CChh---HHHhhhHHHHHHHHHHHHhhcCCCcEEEEEeCChhhHHHHHHHHCCCC
Q 019990 78 ---ACKDVNIAVMVGGFPRKEG---MERK---DVMSKNVSIYKAQASALEKHAAPNCKVLVVANPANTNALILKEFAPSI 148 (332)
Q Consensus 78 ---a~~~aDiVi~~ag~~~~~~---~~~~---~~~~~N~~~~~~i~~~i~~~~~~~~~viv~snp~~~~~~~~~~~~~~~ 148 (332)
.+-..|++|+.||...... .+.+ ..+..|+...-.+.+.+..+-..+..++++++..... .+.
T Consensus 78 ~~~~~g~idilinnag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~m~~~g~~iii~s~~~~~--------~~~ 149 (259)
T d1ja9a_ 78 AVSHFGGLDFVMSNSGMEVWCDELEVTQELFDKVFNLNTRGQFFVAQQGLKHCRRGGRIILTSSIAAVM--------TGI 149 (259)
T ss_dssp HHHHHSCEEEEECCCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHEEEEEEEEEECCGGGTC--------CSC
T ss_pred HHHHcCCCcEEEeccccccccccccchHHHHHHHHhhccceeeeehhhhhhhhhcCCcccccccccccc--------cCC
Confidence 2336899999998743211 2222 3455666555444544444332234555555432210 233
Q ss_pred CCCcEEEeecccHHHHHHHHHHHcCCCCCCeeeeEEEec
Q 019990 149 PAKNITCLTRLDHNRAMGQISERLKVHVSDVKNVIIWGN 187 (332)
Q Consensus 149 ~~~~i~~~t~l~~~r~~~~~a~~~~v~~~~v~~~~V~G~ 187 (332)
+..-.|+.+|-....+.+.+|+.++ +..||. +.+-+
T Consensus 150 ~~~~~Y~asK~al~~l~r~lA~e~~--~~gIrv-N~I~P 185 (259)
T d1ja9a_ 150 PNHALYAGSKAAVEGFCRAFAVDCG--AKGVTV-NCIAP 185 (259)
T ss_dssp CSCHHHHHHHHHHHHHHHHHHHHHG--GGTCEE-EEEEE
T ss_pred CCchhHHHHHHHHHHHHHHHHHHHh--hcCeEE-eccCc
Confidence 4334678888888888889998877 556774 44454
|
| >d1spxa_ c.2.1.2 (A:) Glucose dehydrogenase (5l265) {Nematode (Caenorhabditis elegans) [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Glucose dehydrogenase (5l265) species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Probab=97.94 E-value=1.1e-05 Score=69.37 Aligned_cols=161 Identities=13% Similarity=0.142 Sum_probs=92.7
Q ss_pred CCcEEEEEcCCChhHHHHHHHHHhcccCCCCCCeEEEEEecccchhhhhhhHhhhhhhcc------CCccceEEeCCHHH
Q 019990 4 NPLRVLVTGAAGQIGYALVPMIARGIMLGPDQPVILHMLDIEPAAEALNGVKMELIDAAF------PLLKGVVATTDVVE 77 (332)
Q Consensus 4 ~~~kI~VtGaaG~IGs~l~~~L~~~~~~~~~~~~~i~l~D~~~~~~~~~~~~~dl~~~~~------~~~~~v~~~~~~~~ 77 (332)
+.+.++||||++-||.+++..|++.|. +|.+.|++. +.++....++..... .+..|++...+..+
T Consensus 4 ~gKvalVTGas~GIG~aia~~la~~Ga-------~V~~~~r~~--~~l~~~~~~l~~~~~~~~~~~~~~~Dvt~~~~v~~ 74 (264)
T d1spxa_ 4 AEKVAIITGSSNGIGRATAVLFAREGA-------KVTITGRHA--ERLEETRQQILAAGVSEQNVNSVVADVTTDAGQDE 74 (264)
T ss_dssp TTCEEEETTTTSHHHHHHHHHHHHTTC-------EEEEEESCH--HHHHHHHHHHHHTTCCGGGEEEEECCTTSHHHHHH
T ss_pred CCCEEEEeCcCCHHHHHHHHHHHHCCC-------EEEEEECCH--HHHHHHHHHHHhcCCCcCceEEEEccCCCHHHHHH
Confidence 346789999999999999999999886 899999864 445555555543211 11234433333322
Q ss_pred H-------hCCCcEEEEecCCCCC-----C--CCChh---HHHhhhHHHH----HHHHHHHHhhcCCCcEEEEEeCChhh
Q 019990 78 A-------CKDVNIAVMVGGFPRK-----E--GMERK---DVMSKNVSIY----KAQASALEKHAAPNCKVLVVANPANT 136 (332)
Q Consensus 78 a-------~~~aDiVi~~ag~~~~-----~--~~~~~---~~~~~N~~~~----~~i~~~i~~~~~~~~~viv~snp~~~ 136 (332)
. +-..|++|+.||.... + ..+.+ ..+..|+... +.+++.+++. .. .+|++++....
T Consensus 75 ~~~~~~~~~g~iDilvnnAG~~~~~~~~~~~~~~~~e~~~~~~~vNl~~~~~~~~~~~p~m~~~--~g-~iI~~~S~~~~ 151 (264)
T d1spxa_ 75 ILSTTLGKFGKLDILVNNAGAAIPDSQSKTGTAQSIESYDATLNLNLRSVIALTKKAVPHLSST--KG-EIVNISSIASG 151 (264)
T ss_dssp HHHHHHHHHSCCCEEEECCC-------------CCHHHHHHHHHHHTHHHHHHHHHHHHHHHHH--TC-EEEEECCTTSS
T ss_pred HHHHHHHHhCCCCEeecccccccCCccccccccCCHHHHHHHHHHhHHHHHHHHhhhCCccccc--cC-cceeeeeeccc
Confidence 2 3478999999986321 1 11222 2455565544 5555555543 23 44544443211
Q ss_pred HHHHHHHHCCCCCCCcEEEeecccHHHHHHHHHHHcCCCCCCeeeeEEEec
Q 019990 137 NALILKEFAPSIPAKNITCLTRLDHNRAMGQISERLKVHVSDVKNVIIWGN 187 (332)
Q Consensus 137 ~~~~~~~~~~~~~~~~i~~~t~l~~~r~~~~~a~~~~v~~~~v~~~~V~G~ 187 (332)
. .+.|....|+.+|-.-..+.+.+|..++ +..||. +.+-+
T Consensus 152 ~--------~~~~~~~~Y~asKaal~~lt~~lA~el~--~~gIrV-N~V~P 191 (264)
T d1spxa_ 152 L--------HATPDFPYYSIAKAAIDQYTRNTAIDLI--QHGIRV-NSISP 191 (264)
T ss_dssp S--------SCCTTSHHHHHHHHHHHHHHHHHHHHHG--GGTCEE-EEEEE
T ss_pred c--------ccCCCchhhhhhhhhHHHHHHHHHHHhc--ccCeEE-EEEee
Confidence 0 1223233577778777788888888875 556774 44444
|
| >d1ks9a2 c.2.1.6 (A:1-167) Ketopantoate reductase PanE {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Ketopantoate reductase PanE species: Escherichia coli [TaxId: 562]
Probab=97.90 E-value=1.3e-05 Score=63.35 Aligned_cols=101 Identities=10% Similarity=0.104 Sum_probs=62.8
Q ss_pred cEEEEEcCCChhHHHHHHHHHhcccCCCCCCeEEEEEecccchhhhhhhHhhhhhhccCCccceEEeCCHHHHhCCCcEE
Q 019990 6 LRVLVTGAAGQIGYALVPMIARGIMLGPDQPVILHMLDIEPAAEALNGVKMELIDAAFPLLKGVVATTDVVEACKDVNIA 85 (332)
Q Consensus 6 ~kI~VtGaaG~IGs~l~~~L~~~~~~~~~~~~~i~l~D~~~~~~~~~~~~~dl~~~~~~~~~~v~~~~~~~~a~~~aDiV 85 (332)
|||+|+| +|.+|+.++..|.+.|+ +|.++++... .... ......... ........+..++..++|+|
T Consensus 1 MkI~IiG-aG~iG~~~a~~L~~~G~-------~V~~~~r~~~--~~~~--~~~~~~~~~-~~~~~~~~~~~~~~~~~D~i 67 (167)
T d1ks9a2 1 MKITVLG-CGALGQLWLTALCKQGH-------EVQGWLRVPQ--PYCS--VNLVETDGS-IFNESLTANDPDFLATSDLL 67 (167)
T ss_dssp CEEEEEC-CSHHHHHHHHHHHHTTC-------EEEEECSSCC--SEEE--EEEECTTSC-EEEEEEEESCHHHHHTCSEE
T ss_pred CEEEEEC-cCHHHHHHHHHHHHCCC-------ceEEEEcCHH--Hhhh--hccccCCcc-ccccccccchhhhhcccceE
Confidence 6899999 59999999999999886 8999998642 1111 000010000 11122233445678899999
Q ss_pred EEecCCCCCCCCChhHHHhhhHHHHHHHHHHHHhhcCCCcEEEEEeCChh
Q 019990 86 VMVGGFPRKEGMERKDVMSKNVSIYKAQASALEKHAAPNCKVLVVANPAN 135 (332)
Q Consensus 86 i~~ag~~~~~~~~~~~~~~~N~~~~~~i~~~i~~~~~~~~~viv~snp~~ 135 (332)
|++.... .+.+.++.+..+..++..++...|-..
T Consensus 68 ii~vka~----------------~~~~~~~~l~~~~~~~~~Iv~~qNG~~ 101 (167)
T d1ks9a2 68 LVTLKAW----------------QVSDAVKSLASTLPVTTPILLIHNGMG 101 (167)
T ss_dssp EECSCGG----------------GHHHHHHHHHTTSCTTSCEEEECSSSC
T ss_pred EEeeccc----------------chHHHHHhhccccCcccEEeeccCccc
Confidence 9974211 023456666665446667787888654
|
| >d1uzma1 c.2.1.2 (A:9-245) beta-keto acyl carrier protein reductase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: beta-keto acyl carrier protein reductase species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=97.88 E-value=8.1e-06 Score=69.08 Aligned_cols=153 Identities=16% Similarity=0.188 Sum_probs=91.0
Q ss_pred CCcEEEEEcCCChhHHHHHHHHHhcccCCCCCCeEEEEEecccchhhhhhhHhhhhhhccCCccceEEeC-------CHH
Q 019990 4 NPLRVLVTGAAGQIGYALVPMIARGIMLGPDQPVILHMLDIEPAAEALNGVKMELIDAAFPLLKGVVATT-------DVV 76 (332)
Q Consensus 4 ~~~kI~VtGaaG~IGs~l~~~L~~~~~~~~~~~~~i~l~D~~~~~~~~~~~~~dl~~~~~~~~~~v~~~~-------~~~ 76 (332)
+.++++||||++.||.+++..|++.|. +|.+.|++.. ..+.. ..+..|++... ...
T Consensus 6 ~gK~~lITGas~GIG~aia~~la~~Ga-------~V~~~~r~~~--~~~~~--------~~~~~Dv~~~~~v~~~~~~~~ 68 (237)
T d1uzma1 6 VSRSVLVTGGNRGIGLAIAQRLAADGH-------KVAVTHRGSG--APKGL--------FGVEVDVTDSDAVDRAFTAVE 68 (237)
T ss_dssp CCCEEEETTTTSHHHHHHHHHHHHTTC-------EEEEEESSSC--CCTTS--------EEEECCTTCHHHHHHHHHHHH
T ss_pred CCCEEEEeCCCCHHHHHHHHHHHHCCC-------EEEEEECCcc--hhcCc--------eEEEEecCCHHHHHHHHHHHH
Confidence 467899999999999999999999886 8999998642 22110 00111222211 223
Q ss_pred HHhCCCcEEEEecCCCCCC---CCChh---HHHhhhHHHH----HHHHHHHHhhcCCCcEEEEEeCChhhHHHHHHHHCC
Q 019990 77 EACKDVNIAVMVGGFPRKE---GMERK---DVMSKNVSIY----KAQASALEKHAAPNCKVLVVANPANTNALILKEFAP 146 (332)
Q Consensus 77 ~a~~~aDiVi~~ag~~~~~---~~~~~---~~~~~N~~~~----~~i~~~i~~~~~~~~~viv~snp~~~~~~~~~~~~~ 146 (332)
+.+...|++|+.||..... ..+.+ ..++.|+... +.+++.+.+. ..+++|++|+.....
T Consensus 69 ~~~g~iDiLVnnAG~~~~~~~~~~~~e~~~~~~~vNl~~~~~~~~~~~~~m~~~--~~g~Iv~isS~~~~~--------- 137 (237)
T d1uzma1 69 EHQGPVEVLVSNAGLSADAFLMRMTEEKFEKVINANLTGAFRVAQRASRSMQRN--KFGRMIFIGSVSGLW--------- 137 (237)
T ss_dssp HHHSSCSEEEEECSCCC-----CCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHT--TCEEEEEECCCCC-----------
T ss_pred HhcCCceEEEeeecccccccHhhCCHHHHHHHHHhhhhhhhhhhhhhhhccccc--CCCceEEEcchhhcc---------
Confidence 3345789999999974321 22333 2456666544 4555556554 356777777643211
Q ss_pred CCCCCcEEEeecccHHHHHHHHHHHcCCCCCCeeeeEEEec
Q 019990 147 SIPAKNITCLTRLDHNRAMGQISERLKVHVSDVKNVIIWGN 187 (332)
Q Consensus 147 ~~~~~~i~~~t~l~~~r~~~~~a~~~~v~~~~v~~~~V~G~ 187 (332)
+.+....|+.+|-.-..+.+.+|..++ +..||. +.+-+
T Consensus 138 ~~~~~~~Y~asKaal~~lt~~lA~e~~--~~gIrV-N~I~P 175 (237)
T d1uzma1 138 GIGNQANYAASKAGVIGMARSIARELS--KANVTA-NVVAP 175 (237)
T ss_dssp ---CCHHHHHHHHHHHHHHHHHHHHHG--GGTEEE-EEEEE
T ss_pred CCcccHHHHHHHHHHHHHHHHHHhhhh--cCCcee-eeeee
Confidence 122223567777777788888888765 456774 33443
|
| >d1sbya1 c.2.1.2 (A:1-254) Drosophila alcohol dehydrogenase {Fly (Drosophila lebanonensis) [TaxId: 7225]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Drosophila alcohol dehydrogenase species: Fly (Drosophila lebanonensis) [TaxId: 7225]
Probab=97.86 E-value=2.9e-05 Score=66.29 Aligned_cols=158 Identities=12% Similarity=0.093 Sum_probs=89.9
Q ss_pred CCCCCcEEEEEcCCChhHHHHHHHHHhcccCCCCCCeEEEEEecccchhhhhhhHhhhhhhc-----cCCccceEE-eCC
Q 019990 1 MAKNPLRVLVTGAAGQIGYALVPMIARGIMLGPDQPVILHMLDIEPAAEALNGVKMELIDAA-----FPLLKGVVA-TTD 74 (332)
Q Consensus 1 m~~~~~kI~VtGaaG~IGs~l~~~L~~~~~~~~~~~~~i~l~D~~~~~~~~~~~~~dl~~~~-----~~~~~~v~~-~~~ 74 (332)
|..+.+.|+||||++-||..++..|++.|. ++.+++++.. ..... .++.... .....+++. ..+
T Consensus 1 m~l~gK~vlITGgs~GIG~~~A~~la~~G~-------~vii~~r~~~--~~~~~-~~~~~~~~~~~~~~~~~d~~~~~~~ 70 (254)
T d1sbya1 1 MDLTNKNVIFVAALGGIGLDTSRELVKRNL-------KNFVILDRVE--NPTAL-AELKAINPKVNITFHTYDVTVPVAE 70 (254)
T ss_dssp CCCTTCEEEEETTTSHHHHHHHHHHHHTCC-------SEEEEEESSC--CHHHH-HHHHHHCTTSEEEEEECCTTSCHHH
T ss_pred CCCCCCEEEEecCCCHHHHHHHHHHHHCCC-------EEEEEECCcc--cHHHH-HHHHhhCCCCCEEEEEeecCCCHHH
Confidence 677788999999999999999999999885 5655544321 12211 1221110 011122221 111
Q ss_pred H-------HHHhCCCcEEEEecCCCCCCCCChhHHHhhhHHHH----HHHHHHHHhhc-CCCcEEEEEeCChhhHHHHHH
Q 019990 75 V-------VEACKDVNIAVMVGGFPRKEGMERKDVMSKNVSIY----KAQASALEKHA-APNCKVLVVANPANTNALILK 142 (332)
Q Consensus 75 ~-------~~a~~~aDiVi~~ag~~~~~~~~~~~~~~~N~~~~----~~i~~~i~~~~-~~~~~viv~snp~~~~~~~~~ 142 (332)
. .+.+...|++|+.||.... .+-+..++.|+... +.+++.+.+.. .+.+++|++++-...
T Consensus 71 ~~~~~~~~~~~~g~iDilvnnAG~~~~--~~~~~~~~vNl~g~~~~~~~~~~~m~~~~~~~~g~Ii~isS~~~~------ 142 (254)
T d1sbya1 71 SKKLLKKIFDQLKTVDILINGAGILDD--HQIERTIAINFTGLVNTTTAILDFWDKRKGGPGGIIANICSVTGF------ 142 (254)
T ss_dssp HHHHHHHHHHHHSCCCEEEECCCCCCT--TCHHHHHHHHTHHHHHHHHHHHHHHCGGGTCCCEEEEEECCGGGT------
T ss_pred HHHHHHHHHHHcCCCCEEEeCCCCCCH--HHHHHHHHHHhHHHHHHHHHHHHHhhhcccCCCceEEEEechhhc------
Confidence 1 2224578999999997532 23345667776544 55555664432 134566766653221
Q ss_pred HHCCCCCCCcEEEeecccHHHHHHHHHHHcCCCCCCeee
Q 019990 143 EFAPSIPAKNITCLTRLDHNRAMGQISERLKVHVSDVKN 181 (332)
Q Consensus 143 ~~~~~~~~~~i~~~t~l~~~r~~~~~a~~~~v~~~~v~~ 181 (332)
.+.+....|+.+|-....|.+.+|..+. +..||.
T Consensus 143 ---~~~~~~~~Y~asKaal~~~t~~la~el~--~~gIrV 176 (254)
T d1sbya1 143 ---NAIHQVPVYSASKAAVVSFTNSLAKLAP--ITGVTA 176 (254)
T ss_dssp ---SCCTTSHHHHHHHHHHHHHHHHHHHHHH--HHSEEE
T ss_pred ---cCCCCCHHHHHHHHHHHHHHHHHHhhcc--ccCeEE
Confidence 1233333567777777777777887653 445663
|
| >d1t4ba1 c.2.1.3 (A:1-133,A:355-367) Aspartate beta-semialdehyde dehydrogenase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Aspartate beta-semialdehyde dehydrogenase species: Escherichia coli [TaxId: 562]
Probab=97.85 E-value=8.9e-05 Score=57.53 Aligned_cols=100 Identities=13% Similarity=0.084 Sum_probs=56.4
Q ss_pred CcEEEEEcCCChhHHHHHHHHHhcccCCCCCCeEEEEEecccchhhhhhhHhhhhhhccCCccceEEeCCHHHHhCCCcE
Q 019990 5 PLRVLVTGAAGQIGYALVPMIARGIMLGPDQPVILHMLDIEPAAEALNGVKMELIDAAFPLLKGVVATTDVVEACKDVNI 84 (332)
Q Consensus 5 ~~kI~VtGaaG~IGs~l~~~L~~~~~~~~~~~~~i~l~D~~~~~~~~~~~~~dl~~~~~~~~~~v~~~~~~~~a~~~aDi 84 (332)
|+||+|+||+|.||+-++..|++...+. ..+++++..... .+........ ...+....+ .++++++|+
T Consensus 1 MkkVaIvGATG~VGqeli~~Ll~~~~~p---~~~l~~~~ss~s----~g~~~~~~~~----~~~~~~~~~-~~~~~~~Di 68 (146)
T d1t4ba1 1 MQNVGFIGWRGMVGSVLMQRMVEERDFD---AIRPVFFSTSQL----GQAAPSFGGT----TGTLQDAFD-LEALKALDI 68 (146)
T ss_dssp CCEEEEESTTSHHHHHHHHHHHHTTGGG---GSEEEEEESSST----TSBCCGGGTC----CCBCEETTC-HHHHHTCSE
T ss_pred CcEEEEECCccHHHHHHHHHHHhCCCCC---eeEEEEeecccc----ccccccccCC----ceeeecccc-hhhhhcCcE
Confidence 4589999999999999998877653222 137877765321 1111111100 011111222 346889999
Q ss_pred EEEecCCCCCCCCChhHHHhhhHHHHHHHHHHHHhhcCCCcEEEEEeCChh
Q 019990 85 AVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEKHAAPNCKVLVVANPAN 135 (332)
Q Consensus 85 Vi~~ag~~~~~~~~~~~~~~~N~~~~~~i~~~i~~~~~~~~~viv~snp~~ 135 (332)
+|++++ .+..+.+.+.+.+.+ . ..++++|..+
T Consensus 69 vF~a~~----------------~~~s~~~~~~~~~~g-~--~~~VID~Ss~ 100 (146)
T d1t4ba1 69 IVTCQG----------------GDYTNEIYPKLRESG-W--QGYWIDAASS 100 (146)
T ss_dssp EEECSC----------------HHHHHHHHHHHHHTT-C--CCEEEECSST
T ss_pred EEEecC----------------chHHHHhhHHHHhcC-C--CeecccCCcc
Confidence 999752 122345666666654 2 2345666543
|
| >d1dlja2 c.2.1.6 (A:1-196) UDP-glucose dehydrogenase (UDPGDH) {Streptococcus pyogenes [TaxId: 1314]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: UDP-glucose dehydrogenase (UDPGDH) species: Streptococcus pyogenes [TaxId: 1314]
Probab=97.84 E-value=0.00015 Score=58.87 Aligned_cols=73 Identities=19% Similarity=0.321 Sum_probs=48.2
Q ss_pred cEEEEEcCCChhHHHHHHHHHhcccCCCCCCeEEEEEecccchhhhhhhHhhhhhhccC------------CccceEEeC
Q 019990 6 LRVLVTGAAGQIGYALVPMIARGIMLGPDQPVILHMLDIEPAAEALNGVKMELIDAAFP------------LLKGVVATT 73 (332)
Q Consensus 6 ~kI~VtGaaG~IGs~l~~~L~~~~~~~~~~~~~i~l~D~~~~~~~~~~~~~dl~~~~~~------------~~~~v~~~~ 73 (332)
|||+|+| .|++|..+|..| +.++ +|..+|++. +++. .+.....+ ...++....
T Consensus 1 MkI~ViG-lG~vGl~~a~~~-a~g~-------~V~g~Din~--~~v~----~l~~g~~p~~e~~l~~~~~~~~~~~~~~~ 65 (196)
T d1dlja2 1 MKIAVAG-SGYVGLSLGVLL-SLQN-------EVTIVDILP--SKVD----KINNGLSPIQDEYIEYYLKSKQLSIKATL 65 (196)
T ss_dssp CEEEEEC-CSHHHHHHHHHH-TTTS-------EEEEECSCH--HHHH----HHHTTCCSSCCHHHHHHHHHSCCCEEEES
T ss_pred CEEEEEC-CChhHHHHHHHH-HCCC-------cEEEEECCH--HHHH----HHhhcccccchhhHHHHhhhhhhhhhccc
Confidence 6899999 899999998755 4565 899999864 2222 12111111 123455556
Q ss_pred CHHHHhCCCcEEEEecCCCC
Q 019990 74 DVVEACKDVNIAVMVGGFPR 93 (332)
Q Consensus 74 ~~~~a~~~aDiVi~~ag~~~ 93 (332)
+...+..++|+++++...+.
T Consensus 66 ~~~~~~~~~~ii~v~vpt~~ 85 (196)
T d1dlja2 66 DSKAAYKEAELVIIATPTNY 85 (196)
T ss_dssp CHHHHHHHCSEEEECCCCCE
T ss_pred hhhhhhhccccccccCCccc
Confidence 66777889999988765543
|
| >d1w6ua_ c.2.1.2 (A:) 2,4-dienoyl-CoA reductase, mitochondrial (DECR) {Human (Homo sapiens), [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 2,4-dienoyl-CoA reductase, mitochondrial (DECR) species: Human (Homo sapiens), [TaxId: 9606]
Probab=97.83 E-value=5.8e-05 Score=65.55 Aligned_cols=161 Identities=7% Similarity=-0.019 Sum_probs=90.5
Q ss_pred CcEEEEEcCCChhHHHHHHHHHhcccCCCCCCeEEEEEecccchhhhhhhHhhhhhhc----cCCccceEEeCCHH----
Q 019990 5 PLRVLVTGAAGQIGYALVPMIARGIMLGPDQPVILHMLDIEPAAEALNGVKMELIDAA----FPLLKGVVATTDVV---- 76 (332)
Q Consensus 5 ~~kI~VtGaaG~IGs~l~~~L~~~~~~~~~~~~~i~l~D~~~~~~~~~~~~~dl~~~~----~~~~~~v~~~~~~~---- 76 (332)
.+.++||||+|.||.+++..|++.|. +|++.|++. +.+.....++.... ..+..|++...+..
T Consensus 25 gK~alITGas~GIG~aiA~~la~~Ga-------~Vii~~r~~--~~l~~~~~~l~~~~g~~~~~~~~D~~~~~~v~~~~~ 95 (294)
T d1w6ua_ 25 GKVAFITGGGTGLGKGMTTLLSSLGA-------QCVIASRKM--DVLKATAEQISSQTGNKVHAIQCDVRDPDMVQNTVS 95 (294)
T ss_dssp TCEEEEETTTSHHHHHHHHHHHHTTC-------EEEEEESCH--HHHHHHHHHHHHHHSSCEEEEECCTTCHHHHHHHHH
T ss_pred CCEEEEeCCCCHHHHHHHHHHHHcCC-------EEEEEECCH--HHHHHHHHHHHHhcCCceEEEEecccChHHHHHHhh
Confidence 47799999999999999999999886 899999864 34444444443211 01112333222222
Q ss_pred ---HHhCCCcEEEEecCCCCCCC---CChh---HHHhhhHHHHHH----HHHHHHhhcCCCcEEEEEeCChhhHHHHHHH
Q 019990 77 ---EACKDVNIAVMVGGFPRKEG---MERK---DVMSKNVSIYKA----QASALEKHAAPNCKVLVVANPANTNALILKE 143 (332)
Q Consensus 77 ---~a~~~aDiVi~~ag~~~~~~---~~~~---~~~~~N~~~~~~----i~~~i~~~~~~~~~viv~snp~~~~~~~~~~ 143 (332)
+.+...|++|+.||...... .+.. ..+..|...... .+....... ....+++.++....
T Consensus 96 ~~~~~~g~iDilvnnAg~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~-~~~~i~~~ss~~~~------- 167 (294)
T d1w6ua_ 96 ELIKVAGHPNIVINNAAGNFISPTERLSPNAWKTITDIVLNGTAFVTLEIGKQLIKAQ-KGAAFLSITTIYAE------- 167 (294)
T ss_dssp HHHHHTCSCSEEEECCCCCCCSCGGGCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT-CCEEEEEECCTHHH-------
T ss_pred hhhhhccccchhhhhhhhccccccccchhhhhhhheeeecccchhhhhhhhccccccc-ccccccccccchhh-------
Confidence 22347899999998743221 1111 233444333322 223333322 33344444433211
Q ss_pred HCCCCCCCcEEEeecccHHHHHHHHHHHcCCCCCCeeeeEEEec
Q 019990 144 FAPSIPAKNITCLTRLDHNRAMGQISERLKVHVSDVKNVIIWGN 187 (332)
Q Consensus 144 ~~~~~~~~~i~~~t~l~~~r~~~~~a~~~~v~~~~v~~~~V~G~ 187 (332)
. ..+....|+.+|-.-..+.+.+|..++ +..||. +.+-+
T Consensus 168 ~--~~~~~~~YsasKaal~~ltk~lA~ela--~~gIrV-N~I~P 206 (294)
T d1w6ua_ 168 T--GSGFVVPSASAKAGVEAMSKSLAAEWG--KYGMRF-NVIQP 206 (294)
T ss_dssp H--CCTTCHHHHHHHHHHHHHHHHHHHHHG--GGTEEE-EEEEE
T ss_pred h--cccccchHHHHHHHHHHHHHHHHHHHh--HhCeEE-EEEcc
Confidence 1 122223467777777888888888876 567874 54454
|
| >d1xu9a_ c.2.1.2 (A:) 11-beta-hydroxysteroid dehydrogenase 1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 11-beta-hydroxysteroid dehydrogenase 1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.78 E-value=2.8e-05 Score=66.84 Aligned_cols=157 Identities=15% Similarity=0.132 Sum_probs=89.7
Q ss_pred CCcEEEEEcCCChhHHHHHHHHHhcccCCCCCCeEEEEEecccchhhhhhhHhhhhhhccC----CccceEEeC------
Q 019990 4 NPLRVLVTGAAGQIGYALVPMIARGIMLGPDQPVILHMLDIEPAAEALNGVKMELIDAAFP----LLKGVVATT------ 73 (332)
Q Consensus 4 ~~~kI~VtGaaG~IGs~l~~~L~~~~~~~~~~~~~i~l~D~~~~~~~~~~~~~dl~~~~~~----~~~~v~~~~------ 73 (332)
+.++++||||++.||.+++..|++.|. +|.+.+++. +.++....++...... ...++....
T Consensus 13 ~GK~alITGassGIG~aiA~~la~~G~-------~Vil~~r~~--~~l~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~ 83 (269)
T d1xu9a_ 13 QGKKVIVTGASKGIGREMAYHLAKMGA-------HVVVTARSK--ETLQKVVSHCLELGAASAHYIAGTMEDMTFAEQFV 83 (269)
T ss_dssp TTCEEEESSCSSHHHHHHHHHHHHTTC-------EEEEEESCH--HHHHHHHHHHHHHTCSEEEEEECCTTCHHHHHHHH
T ss_pred CCCEEEEeCCCcHHHHHHHHHHHHCCC-------EEEEEECCH--HHHHHHHHHHhhhhcccchhhhhhhhhHHHHHHHH
Confidence 357899999999999999999999886 899999864 4455444443321110 011111111
Q ss_pred -CHHHHhCCCcEEEEecCCCCCC---CCChh---HHHhhhHH----HHHHHHHHHHhhcCCCcEEEEEeCChhhHHHHHH
Q 019990 74 -DVVEACKDVNIAVMVGGFPRKE---GMERK---DVMSKNVS----IYKAQASALEKHAAPNCKVLVVANPANTNALILK 142 (332)
Q Consensus 74 -~~~~a~~~aDiVi~~ag~~~~~---~~~~~---~~~~~N~~----~~~~i~~~i~~~~~~~~~viv~snp~~~~~~~~~ 142 (332)
...+.....|++++.||..... ..+.+ ..+..|.. .++.++..+++. ++.++++++....
T Consensus 84 ~~~~~~~g~~~~li~nag~~~~~~~~~~~~~~~~~~~~vN~~~~~~~~~~~lp~m~~~---~G~ii~isS~~~~------ 154 (269)
T d1xu9a_ 84 AQAGKLMGGLDMLILNHITNTSLNLFHDDIHHVRKSMEVNFLSYVVLTVAALPMLKQS---NGSIVVVSSLAGK------ 154 (269)
T ss_dssp HHHHHHHTSCSEEEECCCCCCCCCCCCSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHH---TCEEEEEEEGGGT------
T ss_pred HHHHHHhCCccccccccccccccccccCCHHHhhhheeeehhhHHHHHHHHHHHHHhc---CCcceEeccchhc------
Confidence 1112234679999988763221 12322 23455543 335555555543 3466666653321
Q ss_pred HHCCCCCCCcEEEeecccHHHHHHHHHHHcCCCCCCeee
Q 019990 143 EFAPSIPAKNITCLTRLDHNRAMGQISERLKVHVSDVKN 181 (332)
Q Consensus 143 ~~~~~~~~~~i~~~t~l~~~r~~~~~a~~~~v~~~~v~~ 181 (332)
.++|....|+.+|-.-..+...++..+......|+.
T Consensus 155 ---~~~p~~~~Y~asKaal~~~~~~La~El~~~~~~I~V 190 (269)
T d1xu9a_ 155 ---VAYPMVAAYSASKFALDGFFSSIRKEYSVSRVNVSI 190 (269)
T ss_dssp ---SCCTTCHHHHHHHHHHHHHHHHHHHHHHHHTCCCEE
T ss_pred ---CCCCCchHHHHHHHHHHHHHHHHHHHhhhcCCCEEE
Confidence 234444467788877777777787776433334553
|
| >d2pv7a2 c.2.1.6 (A:92-243) Prephenate dehydrogenase TyrA {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Prephenate dehydrogenase TyrA species: Haemophilus influenzae [TaxId: 727]
Probab=97.76 E-value=0.00022 Score=55.44 Aligned_cols=39 Identities=15% Similarity=0.325 Sum_probs=34.6
Q ss_pred CCCCCcEEEEEcCCChhHHHHHHHHHhcccCCCCCCeEEEEEeccc
Q 019990 1 MAKNPLRVLVTGAAGQIGYALVPMIARGIMLGPDQPVILHMLDIEP 46 (332)
Q Consensus 1 m~~~~~kI~VtGaaG~IGs~l~~~L~~~~~~~~~~~~~i~l~D~~~ 46 (332)
|+.+++||+|+||.|.+|+.++..|.+.|+ ++.++|++.
T Consensus 5 ~~~~~~kI~iIGg~G~mG~~la~~L~~~G~-------~V~~~d~~~ 43 (152)
T d2pv7a2 5 INSDIHKIVIVGGYGKLGGLFARYLRASGY-------PISILDRED 43 (152)
T ss_dssp SCTTCCCEEEETTTSHHHHHHHHHHHTTTC-------CEEEECTTC
T ss_pred cCCCCCeEEEEcCCCHHHHHHHHHHHHcCC-------CcEeccccc
Confidence 566788999999889999999999999887 899999853
|
| >d2g5ca2 c.2.1.6 (A:30-200) Prephenate dehydrogenase TyrA {Aquifex aeolicus [TaxId: 63363]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Prephenate dehydrogenase TyrA species: Aquifex aeolicus [TaxId: 63363]
Probab=97.73 E-value=0.0002 Score=56.72 Aligned_cols=97 Identities=16% Similarity=0.169 Sum_probs=56.1
Q ss_pred CcEEEEEcCCChhHHHHHHHHHhcccCCCCCCeEEEEEecccchhhhhhhHhhhhhhccCCccceEEeCCHHHHhCCCcE
Q 019990 5 PLRVLVTGAAGQIGYALVPMIARGIMLGPDQPVILHMLDIEPAAEALNGVKMELIDAAFPLLKGVVATTDVVEACKDVNI 84 (332)
Q Consensus 5 ~~kI~VtGaaG~IGs~l~~~L~~~~~~~~~~~~~i~l~D~~~~~~~~~~~~~dl~~~~~~~~~~v~~~~~~~~a~~~aDi 84 (332)
|+||+|+| +|.+|++++..|.+.++. .+|..+|.+. +.++ ...+.. ..+............++|+
T Consensus 1 Mk~I~IIG-~G~mG~sla~~L~~~g~~-----~~I~~~D~~~--~~~~-~a~~~~------~~~~~~~~~~~~~~~~~dl 65 (171)
T d2g5ca2 1 MQNVLIVG-VGFMGGSFAKSLRRSGFK-----GKIYGYDINP--ESIS-KAVDLG------IIDEGTTSIAKVEDFSPDF 65 (171)
T ss_dssp CCEEEEES-CSHHHHHHHHHHHHTTCC-----SEEEEECSCH--HHHH-HHHHTT------SCSEEESCGGGGGGTCCSE
T ss_pred CCEEEEEc-cCHHHHHHHHHHHhcCCC-----eEEEEEECCh--HHHH-HHHHhh------cchhhhhhhhhhhcccccc
Confidence 45799999 799999999999988752 2899999863 1121 111111 1111112222334568999
Q ss_pred EEEecCCCCCCCCChhHHHhhhHHHHHHHHHHHHhhcCCCcEEEEEeC
Q 019990 85 AVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEKHAAPNCKVLVVAN 132 (332)
Q Consensus 85 Vi~~ag~~~~~~~~~~~~~~~N~~~~~~i~~~i~~~~~~~~~viv~sn 132 (332)
||++. + ...+.++++.+..+.+++..++-+++
T Consensus 66 Iila~--------p--------~~~~~~vl~~l~~~~~~~~ii~d~~s 97 (171)
T d2g5ca2 66 VMLSS--------P--------VRTFREIAKKLSYILSEDATVTDQGS 97 (171)
T ss_dssp EEECS--------C--------HHHHHHHHHHHHHHSCTTCEEEECCS
T ss_pred ccccC--------C--------chhhhhhhhhhhcccccccccccccc
Confidence 99863 1 12234555666666545554443443
|
| >d1qsga_ c.2.1.2 (A:) Enoyl-ACP reductase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Enoyl-ACP reductase species: Escherichia coli [TaxId: 562]
Probab=97.67 E-value=6.9e-05 Score=63.61 Aligned_cols=162 Identities=18% Similarity=0.176 Sum_probs=90.6
Q ss_pred CCcEEEEEcCCC--hhHHHHHHHHHhcccCCCCCCeEEEEEecccchhhhhhhHhhhhhhcc---CCccceEEeCCH---
Q 019990 4 NPLRVLVTGAAG--QIGYALVPMIARGIMLGPDQPVILHMLDIEPAAEALNGVKMELIDAAF---PLLKGVVATTDV--- 75 (332)
Q Consensus 4 ~~~kI~VtGaaG--~IGs~l~~~L~~~~~~~~~~~~~i~l~D~~~~~~~~~~~~~dl~~~~~---~~~~~v~~~~~~--- 75 (332)
+.++|+||||+| -||++++..|++.|. +|++.|+++ .......++..... ....++....+.
T Consensus 4 ~gK~~lITGass~~GIG~aiA~~l~~~G~-------~V~i~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 73 (258)
T d1qsga_ 4 SGKRILVTGVASKLSIAYGIAQAMHREGA-------ELAFTYQND---KLKGRVEEFAAQLGSDIVLQCDVAEDASIDTM 73 (258)
T ss_dssp TTCEEEECCCCSTTSHHHHHHHHHHHTTC-------EEEEEESST---TTHHHHHHHHHHTTCCCEEECCTTCHHHHHHH
T ss_pred CCCEEEEECCCCchhHHHHHHHHHHHcCC-------EEEEEeCCH---HHHHHHHHHHhhcCCcceeecccchHHHHHHH
Confidence 457899999988 689999999999886 899999863 22222222222110 001111111111
Q ss_pred ----HHHhCCCcEEEEecCCCCCCCC--------Chh---HHHhhhHHHHHHHHHHHHhhcCCCcEEEEEeCChhhHHHH
Q 019990 76 ----VEACKDVNIAVMVGGFPRKEGM--------ERK---DVMSKNVSIYKAQASALEKHAAPNCKVLVVANPANTNALI 140 (332)
Q Consensus 76 ----~~a~~~aDiVi~~ag~~~~~~~--------~~~---~~~~~N~~~~~~i~~~i~~~~~~~~~viv~snp~~~~~~~ 140 (332)
.+.....|++|+.++....... ..+ .....|......+.+.+..+-.+...++++|.....
T Consensus 74 ~~~~~~~~~~~d~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ii~iss~~~~---- 149 (258)
T d1qsga_ 74 FAELGKVWPKFDGFVHSIGFAPGDQLDGDYVNAVTREGFKIAHDISSYSFVAMAKACRSMLNPGSALLTLSYLGAE---- 149 (258)
T ss_dssp HHHHHTTCSSEEEEEECCCCCCGGGGSSCHHHHCCHHHHHHHHHHHTHHHHHHHHHHGGGEEEEEEEEEEECGGGT----
T ss_pred HHHhhhcccccceEEEeecccccccccccccccchHHHHHHHHHHHHHHHHHHHHHHHHhccCCcEEEEecchhhc----
Confidence 1112346899998876321111 011 122334445555555555543233345555653211
Q ss_pred HHHHCCCCCCCcEEEeecccHHHHHHHHHHHcCCCCCCeeeeEEEec
Q 019990 141 LKEFAPSIPAKNITCLTRLDHNRAMGQISERLKVHVSDVKNVIIWGN 187 (332)
Q Consensus 141 ~~~~~~~~~~~~i~~~t~l~~~r~~~~~a~~~~v~~~~v~~~~V~G~ 187 (332)
.+.|..-.|+.+|-.-..+.+.+|+.++ +..||. +.+-+
T Consensus 150 -----~~~~~~~~Y~~sKaal~~ltr~lA~el~--~~gIrV-N~I~P 188 (258)
T d1qsga_ 150 -----RAIPNYNVMGLAKASLEANVRYMANAMG--PEGVRV-NAISA 188 (258)
T ss_dssp -----SBCTTTTHHHHHHHHHHHHHHHHHHHHT--TTTEEE-EEEEE
T ss_pred -----cCCCCcHHHHHHHHHHHHHHHHHHHHhC--ccCcee-ecccc
Confidence 2233334678888888889999999987 677884 54554
|
| >d2ahra2 c.2.1.6 (A:1-152) Pyrroline-5-carboxylate reductase ProC {Streptococcus pyogenes [TaxId: 1314]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Pyrroline-5-carboxylate reductase ProC species: Streptococcus pyogenes [TaxId: 1314]
Probab=97.64 E-value=4.4e-05 Score=59.78 Aligned_cols=65 Identities=11% Similarity=0.168 Sum_probs=46.0
Q ss_pred cEEEEEcCCChhHHHHHHHHHhcccCCCCCCeEEEEEecccchhhhhhhHhhhhhhccCCccceEEeCCHHHHhCCCcEE
Q 019990 6 LRVLVTGAAGQIGYALVPMIARGIMLGPDQPVILHMLDIEPAAEALNGVKMELIDAAFPLLKGVVATTDVVEACKDVNIA 85 (332)
Q Consensus 6 ~kI~VtGaaG~IGs~l~~~L~~~~~~~~~~~~~i~l~D~~~~~~~~~~~~~dl~~~~~~~~~~v~~~~~~~~a~~~aDiV 85 (332)
|||+++| +|.+|++++..|+..+. ++.+++++. ++.+.....+ .+....+..++++++|+|
T Consensus 1 MkIg~IG-~G~mG~al~~~l~~~~~-------~i~v~~r~~--~~~~~l~~~~---------g~~~~~~~~~~~~~~dvI 61 (152)
T d2ahra2 1 MKIGIIG-VGKMASAIIKGLKQTPH-------ELIISGSSL--ERSKEIAEQL---------ALPYAMSHQDLIDQVDLV 61 (152)
T ss_dssp CEEEEEC-CSHHHHHHHHHHTTSSC-------EEEEECSSH--HHHHHHHHHH---------TCCBCSSHHHHHHTCSEE
T ss_pred CEEEEEe-ccHHHHHHHHHHHhCCC-------eEEEEcChH--HhHHhhcccc---------ceeeechhhhhhhcccee
Confidence 6899999 79999999999987664 899998753 2333221111 122235677888999999
Q ss_pred EEec
Q 019990 86 VMVG 89 (332)
Q Consensus 86 i~~a 89 (332)
|++.
T Consensus 62 ilav 65 (152)
T d2ahra2 62 ILGI 65 (152)
T ss_dssp EECS
T ss_pred eeec
Confidence 9874
|
| >d2o23a1 c.2.1.2 (A:6-253) Type II 3-hydroxyacyl-CoA dehydrogenase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Type II 3-hydroxyacyl-CoA dehydrogenase species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.63 E-value=0.00014 Score=61.30 Aligned_cols=163 Identities=12% Similarity=0.045 Sum_probs=92.6
Q ss_pred CCcEEEEEcCCChhHHHHHHHHHhcccCCCCCCeEEEEEecccchhhhhhhHhhhhhhccCCccceEEeC-------CHH
Q 019990 4 NPLRVLVTGAAGQIGYALVPMIARGIMLGPDQPVILHMLDIEPAAEALNGVKMELIDAAFPLLKGVVATT-------DVV 76 (332)
Q Consensus 4 ~~~kI~VtGaaG~IGs~l~~~L~~~~~~~~~~~~~i~l~D~~~~~~~~~~~~~dl~~~~~~~~~~v~~~~-------~~~ 76 (332)
+.+.++||||++.||.+++..|++.|. +|.+.|++. +.++....++.........++.... ...
T Consensus 4 kGKvalITGas~GIG~aia~~la~~G~-------~V~~~~r~~--~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 74 (248)
T d2o23a1 4 KGLVAVITGGASGLGLATAERLVGQGA-------SAVLLDLPN--SGGEAQAKKLGNNCVFAPADVTSEKDVQTALALAK 74 (248)
T ss_dssp TTCEEEEETTTSHHHHHHHHHHHHTTC-------EEEEEECTT--SSHHHHHHHHCTTEEEEECCTTCHHHHHHHHHHHH
T ss_pred CCCEEEEeCCCCHHHHHHHHHHHHCCC-------EEEEEeCCh--HHHHHHHHHhCCCcccccccccccccccccccccc
Confidence 456789999999999999999999986 899999864 3444444444221111111111111 112
Q ss_pred HHhCCCcEEEEecCCCCC-------C--CCChh---HHHhhhHHHHHHHHHHHHhh----c----CCCcEEEEEeCChhh
Q 019990 77 EACKDVNIAVMVGGFPRK-------E--GMERK---DVMSKNVSIYKAQASALEKH----A----APNCKVLVVANPANT 136 (332)
Q Consensus 77 ~a~~~aDiVi~~ag~~~~-------~--~~~~~---~~~~~N~~~~~~i~~~i~~~----~----~~~~~viv~snp~~~ 136 (332)
......|.+++.++.... + ..+.+ ..+..|+...-.+.+++..+ . ...+.+|++|+....
T Consensus 75 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vnl~~~~~~~~~~~~~~~~~~~~~~~~~G~Ii~isS~~~~ 154 (248)
T d2o23a1 75 GKFGRVDVAVNCAGIAVASKTYNLKKGQTHTLEDFQRVLDVNLMGTFNVIRLVAGEMGQNEPDQGGQRGVIINTASVAAF 154 (248)
T ss_dssp HHHSCCCEEEECCCCCCCCCSEETTTTEECCHHHHHHHHHHHTHHHHHHHHHHHHHHTTSCCCTTSCCEEEEEECCTHHH
T ss_pred cccccccccccccccccCCCcccccccccchHHHHHHHHhHHHHHHHHHHHHhHHHHHHhhhhccCCceEEEEecchhhc
Confidence 224467888887654211 1 01112 24566765554544444332 1 123566777754321
Q ss_pred HHHHHHHHCCCCCCCcEEEeecccHHHHHHHHHHHcCCCCCCeeeeEEEec
Q 019990 137 NALILKEFAPSIPAKNITCLTRLDHNRAMGQISERLKVHVSDVKNVIIWGN 187 (332)
Q Consensus 137 ~~~~~~~~~~~~~~~~i~~~t~l~~~r~~~~~a~~~~v~~~~v~~~~V~G~ 187 (332)
.+.|..-.|+.+|-.-..+.+.+|+.++ +..||. +.+-+
T Consensus 155 ---------~~~~~~~~Y~asKaal~~lt~~la~e~~--~~gIrv-N~I~P 193 (248)
T d2o23a1 155 ---------EGQVGQAAYSASKGGIVGMTLPIARDLA--PIGIRV-MTIAP 193 (248)
T ss_dssp ---------HCCTTCHHHHHHHHHHHHHHHHHHHHHG--GGTEEE-EEEEE
T ss_pred ---------cCCCCchHHHHHHHHHHHHHHHHHHHhc--ccCcce-eeecc
Confidence 1233334678888888888889998876 566774 44443
|
| >d1vpda2 c.2.1.6 (A:3-163) Hydroxyisobutyrate dehydrogenase {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Hydroxyisobutyrate dehydrogenase species: Salmonella typhimurium [TaxId: 90371]
Probab=97.59 E-value=7.5e-05 Score=58.92 Aligned_cols=64 Identities=19% Similarity=0.324 Sum_probs=47.8
Q ss_pred cEEEEEcCCChhHHHHHHHHHhcccCCCCCCeEEEEEecccchhhhhhhHhhhhhhccCCccceEEeCCHHHHhCCCcEE
Q 019990 6 LRVLVTGAAGQIGYALVPMIARGIMLGPDQPVILHMLDIEPAAEALNGVKMELIDAAFPLLKGVVATTDVVEACKDVNIA 85 (332)
Q Consensus 6 ~kI~VtGaaG~IGs~l~~~L~~~~~~~~~~~~~i~l~D~~~~~~~~~~~~~dl~~~~~~~~~~v~~~~~~~~a~~~aDiV 85 (332)
|||+|+| .|.+|+.++..|++.|+ +|..+|++. ++.+ ++... ......+..++++++|+|
T Consensus 1 MkIgiIG-lG~MG~~~A~~L~~~G~-------~V~~~d~~~--~~~~----~~~~~------~~~~~~~~~e~~~~~d~i 60 (161)
T d1vpda2 1 MKVGFIG-LGIMGKPMSKNLLKAGY-------SLVVSDRNP--EAIA----DVIAA------GAETASTAKAIAEQCDVI 60 (161)
T ss_dssp CEEEEEC-CSTTHHHHHHHHHHTTC-------EEEEECSCH--HHHH----HHHHT------TCEECSSHHHHHHHCSEE
T ss_pred CEEEEEe-hhHHHHHHHHHHHHCCC-------eEEEEeCCc--chhH----HHHHh------hhhhcccHHHHHhCCCeE
Confidence 6899999 89999999999999886 899999864 2222 22221 123345677889999999
Q ss_pred EEec
Q 019990 86 VMVG 89 (332)
Q Consensus 86 i~~a 89 (332)
|.+.
T Consensus 61 i~~v 64 (161)
T d1vpda2 61 ITML 64 (161)
T ss_dssp EECC
T ss_pred EEEc
Confidence 9874
|
| >d1mb4a1 c.2.1.3 (A:1-132,A:355-369) Aspartate beta-semialdehyde dehydrogenase {Vibrio cholerae [TaxId: 666]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Aspartate beta-semialdehyde dehydrogenase species: Vibrio cholerae [TaxId: 666]
Probab=97.55 E-value=0.00068 Score=52.34 Aligned_cols=122 Identities=13% Similarity=0.125 Sum_probs=69.1
Q ss_pred cEEEEEcCCChhHHHHHHHHHhcccCCCCCCeEEEEEecccchhhhhhhHhhhhhhccCCccceEEeCCHHHHhCCCcEE
Q 019990 6 LRVLVTGAAGQIGYALVPMIARGIMLGPDQPVILHMLDIEPAAEALNGVKMELIDAAFPLLKGVVATTDVVEACKDVNIA 85 (332)
Q Consensus 6 ~kI~VtGaaG~IGs~l~~~L~~~~~~~~~~~~~i~l~D~~~~~~~~~~~~~dl~~~~~~~~~~v~~~~~~~~a~~~aDiV 85 (332)
|||+|+||+|++|+.|+..|++..... ..++.++..+. ..+...++.. ....+....+ .+.++++|+|
T Consensus 1 mKVaIiGATGyvG~eLi~lLl~~~~~p---~~~i~~~ss~~----~~gk~~~~~~----~~~~~~~~~~-~~~~~~~Dvv 68 (147)
T d1mb4a1 1 MRVGLVGWRGMVGSVLMQRMVEERDFD---LIEPVFFSTSQ----IGVPAPNFGK----DAGMLHDAFD-IESLKQLDAV 68 (147)
T ss_dssp CEEEEESCSSHHHHHHHHHHHHTTGGG---GSEEEEEESSC----CSSBCCCSSS----CCCBCEETTC-HHHHTTCSEE
T ss_pred CEEEEECCccHHHHHHHHHHHhcCCCC---ceEEEEecccc----ccccccccCC----cceeeecccc-hhhhccccEE
Confidence 689999999999999998887532111 12677665432 1222111100 0011121222 3568999999
Q ss_pred EEecCCCCCCCCChhHHHhhhHHHHHHHHHHHHhhcCCCcEEEEEeCChhhHHHHHHHHCCCCCCCcEEEeecccHHHHH
Q 019990 86 VMVGGFPRKEGMERKDVMSKNVSIYKAQASALEKHAAPNCKVLVVANPANTNALILKEFAPSIPAKNITCLTRLDHNRAM 165 (332)
Q Consensus 86 i~~ag~~~~~~~~~~~~~~~N~~~~~~i~~~i~~~~~~~~~viv~snp~~~~~~~~~~~~~~~~~~~i~~~t~l~~~r~~ 165 (332)
|++.. -...+++.+.+.+.+ .+. +++.+..+. .++++.+++..-+....+.
T Consensus 69 F~alp----------------~~~s~~~~~~l~~~g-~~~--~VIDlSsdf----------R~~~dvpl~lPEiN~~~I~ 119 (147)
T d1mb4a1 69 ITCQG----------------GSYTEKVYPALRQAG-WKG--YWIDAASTL----------RMDKEAIITLDPVNLKQIL 119 (147)
T ss_dssp EECSC----------------HHHHHHHHHHHHHTT-CCS--EEEESSSTT----------TTCTTEEEECHHHHHHHHH
T ss_pred EEecC----------------chHHHHHhHHHHHcC-Cce--EEEeCCccc----------cccCCceEEeCCcCHHHHH
Confidence 98742 122346667777665 332 455766552 3566667777766666655
Q ss_pred HHH
Q 019990 166 GQI 168 (332)
Q Consensus 166 ~~~ 168 (332)
..+
T Consensus 120 ~a~ 122 (147)
T d1mb4a1 120 HGI 122 (147)
T ss_dssp HHH
T ss_pred HHH
Confidence 444
|
| >d1snya_ c.2.1.2 (A:) Carbonyl reductase sniffer {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Carbonyl reductase sniffer species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]
Probab=97.55 E-value=0.00015 Score=61.31 Aligned_cols=163 Identities=15% Similarity=0.086 Sum_probs=87.7
Q ss_pred CcEEEEEcCCChhHHHHHHHHHhcccCCCCCCeEEEEEecccchhhhhhhHhhhhhh--cc-CCccceEEeCCHHHH---
Q 019990 5 PLRVLVTGAAGQIGYALVPMIARGIMLGPDQPVILHMLDIEPAAEALNGVKMELIDA--AF-PLLKGVVATTDVVEA--- 78 (332)
Q Consensus 5 ~~kI~VtGaaG~IGs~l~~~L~~~~~~~~~~~~~i~l~D~~~~~~~~~~~~~dl~~~--~~-~~~~~v~~~~~~~~a--- 78 (332)
|++|+||||++-||..++..|++....+ ..|.+.+++. +.++.. .++... .. .+..|++...+..++
T Consensus 2 MKtilITGas~GIG~a~a~~l~~~a~~g----~~V~~~~r~~--~~~~~~-~~~~~~~~~~~~~~~Dvs~~~~v~~~~~~ 74 (248)
T d1snya_ 2 MNSILITGCNRGLGLGLVKALLNLPQPP----QHLFTTCRNR--EQAKEL-EDLAKNHSNIHILEIDLRNFDAYDKLVAD 74 (248)
T ss_dssp CSEEEESCCSSHHHHHHHHHHHTSSSCC----SEEEEEESCT--TSCHHH-HHHHHHCTTEEEEECCTTCGGGHHHHHHH
T ss_pred cCEEEEeCCCCHHHHHHHHHHHHHHhCC----CEEEEEECCH--HHHHHH-HHHHhcCCcEEEEEEEeccHHHHHHHHhh
Confidence 5689999999999999999987521111 2899999864 333322 222211 11 112344433333222
Q ss_pred ------hCCCcEEEEecCCCCCC----CCChh---HHHhhhHHHH----HHHHHHHHhhc---------CCCcEEEEEeC
Q 019990 79 ------CKDVNIAVMVGGFPRKE----GMERK---DVMSKNVSIY----KAQASALEKHA---------APNCKVLVVAN 132 (332)
Q Consensus 79 ------~~~aDiVi~~ag~~~~~----~~~~~---~~~~~N~~~~----~~i~~~i~~~~---------~~~~~viv~sn 132 (332)
....|++|+.||..... ..+.. ..++.|.... +.++..+++.. .....+|++++
T Consensus 75 i~~~~~~~~iDiLvnNAg~~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~~p~l~~~~~~~~~~~~~~~~g~ii~i~S 154 (248)
T d1snya_ 75 IEGVTKDQGLNVLFNNAGIAPKSARITAVRSQELLDTLQTNTVVPIMLAKACLPLLKKAAKANESQPMGVGRAAIINMSS 154 (248)
T ss_dssp HHHHHGGGCCSEEEECCCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHTTTSCSSTTTCEEEEECC
T ss_pred hHHHhhcCCcceEEeeccccccCcccccCCHHHHHHHHHhccccHHHHHHHHHHHHHHhhhccccccccccccccccccc
Confidence 13589999999874322 12222 2455665444 44444444421 01346676665
Q ss_pred ChhhHHHHHHHHCCCCCCCcEEEeecccHHHHHHHHHHHcCCCCCCeeee
Q 019990 133 PANTNALILKEFAPSIPAKNITCLTRLDHNRAMGQISERLKVHVSDVKNV 182 (332)
Q Consensus 133 p~~~~~~~~~~~~~~~~~~~i~~~t~l~~~r~~~~~a~~~~v~~~~v~~~ 182 (332)
-...+.. ...+..-.|+.+|..-..+.+.+|..+. +..|+..
T Consensus 155 ~~g~~~~------~~~~~~~~Y~aSKaal~~lt~~la~e~~--~~gI~vn 196 (248)
T d1snya_ 155 ILGSIQG------NTDGGMYAYRTSKSALNAATKSLSVDLY--PQRIMCV 196 (248)
T ss_dssp GGGCSTT------CCSCCCHHHHHHHHHHHHHHHHHHHHHG--GGTCEEE
T ss_pred cccccCC------CCCCChHHHHHHHHHHHHHHHHHHHHhC--CCCeEEE
Confidence 4322110 1111122467777777778778887764 4556643
|
| >d3cuma2 c.2.1.6 (A:1-162) Hydroxyisobutyrate dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Hydroxyisobutyrate dehydrogenase species: Pseudomonas aeruginosa [TaxId: 287]
Probab=97.55 E-value=0.00015 Score=57.10 Aligned_cols=65 Identities=17% Similarity=0.333 Sum_probs=48.3
Q ss_pred CcEEEEEcCCChhHHHHHHHHHhcccCCCCCCeEEEEEecccchhhhhhhHhhhhhhccCCccceEEeCCHHHHhCCCcE
Q 019990 5 PLRVLVTGAAGQIGYALVPMIARGIMLGPDQPVILHMLDIEPAAEALNGVKMELIDAAFPLLKGVVATTDVVEACKDVNI 84 (332)
Q Consensus 5 ~~kI~VtGaaG~IGs~l~~~L~~~~~~~~~~~~~i~l~D~~~~~~~~~~~~~dl~~~~~~~~~~v~~~~~~~~a~~~aDi 84 (332)
|+||+++| .|.+|++++.+|++.++ +|..+|++. ++. .++... ......+..++++.+|+
T Consensus 1 M~kIg~IG-lG~MG~~iA~~L~~~g~-------~v~~~d~~~--~~~----~~~~~~------~~~~~~~~~e~~~~~di 60 (162)
T d3cuma2 1 MKQIAFIG-LGHMGAPMATNLLKAGY-------LLNVFDLVQ--SAV----DGLVAA------GASAARSARDAVQGADV 60 (162)
T ss_dssp CCEEEEEC-CSTTHHHHHHHHHHTTC-------EEEEECSSH--HHH----HHHHHT------TCEECSSHHHHHTSCSE
T ss_pred CCEEEEEE-EHHHHHHHHHHHHHCCC-------eEEEEECch--hhh----hhhhhh------hccccchhhhhccccCe
Confidence 56899999 89999999999999886 899999853 122 222221 22334567888999999
Q ss_pred EEEec
Q 019990 85 AVMVG 89 (332)
Q Consensus 85 Vi~~a 89 (332)
|+.+.
T Consensus 61 ii~~v 65 (162)
T d3cuma2 61 VISML 65 (162)
T ss_dssp EEECC
T ss_pred eeecc
Confidence 98874
|
| >d1zmta1 c.2.1.2 (A:2-253) Halohydrin dehalogenase HheC {Agrobacterium tumefaciens [TaxId: 358]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Halohydrin dehalogenase HheC species: Agrobacterium tumefaciens [TaxId: 358]
Probab=97.53 E-value=0.00034 Score=59.16 Aligned_cols=155 Identities=12% Similarity=0.058 Sum_probs=91.3
Q ss_pred EEEEEcCCChhHHHHHHHHHhcccCCCCCCeEEEEEecccchhhhhhhHhhhhhhccCCccceEEeCCHHH-------Hh
Q 019990 7 RVLVTGAAGQIGYALVPMIARGIMLGPDQPVILHMLDIEPAAEALNGVKMELIDAAFPLLKGVVATTDVVE-------AC 79 (332)
Q Consensus 7 kI~VtGaaG~IGs~l~~~L~~~~~~~~~~~~~i~l~D~~~~~~~~~~~~~dl~~~~~~~~~~v~~~~~~~~-------a~ 79 (332)
.++||||++.||..++..|++.|. +|.+.|++. +.+... ..+... ....++....+..+ .+
T Consensus 2 TAlVTGas~GiG~aiA~~la~~Ga-------~V~i~~r~~--~~~~~~-~~~~~~--~~~~dv~~~~~~~~~~~~~~~~~ 69 (252)
T d1zmta1 2 TAIVTNVKHFGGMGSALRLSEAGH-------TVACHDESF--KQKDEL-EAFAET--YPQLKPMSEQEPAELIEAVTSAY 69 (252)
T ss_dssp EEEESSTTSTTHHHHHHHHHHTTC-------EEEECCGGG--GSHHHH-HHHHHH--CTTSEECCCCSHHHHHHHHHHHH
T ss_pred EEEEECCCCHHHHHHHHHHHHCCC-------EEEEEECCH--HHHHHH-HhhhCc--EEEeccCCHHHHHHHHHHHHHHc
Confidence 578999999999999999999886 899999753 222211 111111 11223433333332 23
Q ss_pred CCCcEEEEecCCCC--CC--CCChhH---HHhhhHHH----HHHHHHHHHhhcCCCcEEEEEeCChhhHHHHHHHHCCCC
Q 019990 80 KDVNIAVMVGGFPR--KE--GMERKD---VMSKNVSI----YKAQASALEKHAAPNCKVLVVANPANTNALILKEFAPSI 148 (332)
Q Consensus 80 ~~aDiVi~~ag~~~--~~--~~~~~~---~~~~N~~~----~~~i~~~i~~~~~~~~~viv~snp~~~~~~~~~~~~~~~ 148 (332)
-..|++|+.||... .+ ..+.++ .++.|+.. ++.+++.+++.. .+.+|++|+-... .+.
T Consensus 70 G~iDiLVnNAg~~~~~~~~~~~~~e~~~~~~~vnl~~~~~~~~~~~~~m~~~~--~G~IV~isS~~~~---------~~~ 138 (252)
T d1zmta1 70 GQVDVLVSNDIFAPEFQPIDKYAVEDYRGAVEALQIRPFALVNAVASQMKKRK--SGHIIFITSATPF---------GPW 138 (252)
T ss_dssp SCCCEEEEECCCCCCCCCGGGSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHT--CCEEEEECCSTTT---------SCC
T ss_pred CCCCEEEECCcCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHhhcccc--cceeecccccccc---------ccc
Confidence 47899999988632 22 123333 33455433 456666666653 4677777753221 122
Q ss_pred CCCcEEEeecccHHHHHHHHHHHcCCCCCCeeeeEEEec
Q 019990 149 PAKNITCLTRLDHNRAMGQISERLKVHVSDVKNVIIWGN 187 (332)
Q Consensus 149 ~~~~i~~~t~l~~~r~~~~~a~~~~v~~~~v~~~~V~G~ 187 (332)
+..-.|+.+|-.-..+.+.+|+.++ +..||. +.+.+
T Consensus 139 ~~~~~Y~asKaal~~lt~~lA~ela--~~gIrV-N~I~P 174 (252)
T d1zmta1 139 KELSTYTSARAGACTLANALSKELG--EYNIPV-FAIGP 174 (252)
T ss_dssp TTCHHHHHHHHHHHHHHHHHHHHHG--GGTCCE-EEEEE
T ss_pred ccccccccccccHHHHHHHHHHHhc--ccCcEE-EEEec
Confidence 3233577788777888888888876 455663 44454
|
| >d1wmaa1 c.2.1.2 (A:2-276) Carbonyl reductase/20beta-hydroxysteroid dehydrogenase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Carbonyl reductase/20beta-hydroxysteroid dehydrogenase species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.53 E-value=9e-05 Score=63.70 Aligned_cols=118 Identities=17% Similarity=0.108 Sum_probs=72.9
Q ss_pred cEE-EEEcCCChhHHHHHHHHHhc-ccCCCCCCeEEEEEecccchhhhhhhHhhhhhhcc---CCccceEEeCCHH----
Q 019990 6 LRV-LVTGAAGQIGYALVPMIARG-IMLGPDQPVILHMLDIEPAAEALNGVKMELIDAAF---PLLKGVVATTDVV---- 76 (332)
Q Consensus 6 ~kI-~VtGaaG~IGs~l~~~L~~~-~~~~~~~~~~i~l~D~~~~~~~~~~~~~dl~~~~~---~~~~~v~~~~~~~---- 76 (332)
++| +||||++-||..++..|++. +. .|++.+++. ++++....++..... ....|++...+..
T Consensus 3 ~rVAlVTGas~GIG~a~A~~la~~~g~-------~Vi~~~r~~--~~~~~~~~~l~~~~~~~~~~~~Dvs~~~sv~~~~~ 73 (275)
T d1wmaa1 3 IHVALVTGGNKGIGLAIVRDLCRLFSG-------DVVLTARDV--TRGQAAVQQLQAEGLSPRFHQLDIDDLQSIRALRD 73 (275)
T ss_dssp CCEEEESSCSSHHHHHHHHHHHHHSSS-------EEEEEESSH--HHHHHHHHHHHHTTCCCEEEECCTTCHHHHHHHHH
T ss_pred CeEEEECCCCCHHHHHHHHHHHHhCCC-------EEEEEECCH--HHHHHHHHHHHhcCCcEEEEEEecCCHHHHHHHHH
Confidence 567 68999999999999999874 54 899999864 355555555543211 1123443332222
Q ss_pred ---HHhCCCcEEEEecCCCCCC---CCChh---HHHhhhHHHHHHHHHHHHhhcCCCcEEEEEeC
Q 019990 77 ---EACKDVNIAVMVGGFPRKE---GMERK---DVMSKNVSIYKAQASALEKHAAPNCKVLVVAN 132 (332)
Q Consensus 77 ---~a~~~aDiVi~~ag~~~~~---~~~~~---~~~~~N~~~~~~i~~~i~~~~~~~~~viv~sn 132 (332)
+.+...|++|+-||+.... ..+.. ..++.|......+.+.+...-.+.+++|++++
T Consensus 74 ~~~~~~g~iDiLVnNAGi~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~lp~m~~~g~ivnisS 138 (275)
T d1wmaa1 74 FLRKEYGGLDVLVNNAGIAFKVADPTPFHIQAEVTMKTNFFGTRDVCTELLPLIKPQGRVVNVSS 138 (275)
T ss_dssp HHHHHHSSEEEEEECCCCCCCTTCCSCHHHHHHHHHHHHTHHHHHHHHHHGGGEEEEEEEEEECC
T ss_pred HHHHhcCCcEEEEEcCCcCCCCCcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccccc
Confidence 2234689999999974321 12222 24667877776776666554334567787775
|
| >d2fr1a1 c.2.1.2 (A:1657-1915) Erythromycin synthase, eryAI, 1st ketoreductase module {Saccharopolyspora erythraea [TaxId: 1836]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Erythromycin synthase, eryAI, 1st ketoreductase module species: Saccharopolyspora erythraea [TaxId: 1836]
Probab=97.52 E-value=0.0002 Score=60.74 Aligned_cols=121 Identities=14% Similarity=0.065 Sum_probs=70.0
Q ss_pred CCcEEEEEcCCChhHHHHHHHHHhcccCCCCCCeEEEEEecccc-hhhhhhhHhhhhhhcc---CCccceEEeCCHHHHh
Q 019990 4 NPLRVLVTGAAGQIGYALVPMIARGIMLGPDQPVILHMLDIEPA-AEALNGVKMELIDAAF---PLLKGVVATTDVVEAC 79 (332)
Q Consensus 4 ~~~kI~VtGaaG~IGs~l~~~L~~~~~~~~~~~~~i~l~D~~~~-~~~~~~~~~dl~~~~~---~~~~~v~~~~~~~~a~ 79 (332)
+...|+||||+|.||..++..|++.|.. .|+++.++.. .+.......++..... ....|++...+..+.+
T Consensus 8 p~gt~lVTGgs~GIG~a~a~~la~~Ga~------~vvl~~R~~~~~~~~~~~~~~l~~~g~~v~~~~~Dv~d~~~~~~~~ 81 (259)
T d2fr1a1 8 PTGTVLVTGGTGGVGGQIARWLARRGAP------HLLLVSRSGPDADGAGELVAELEALGARTTVAACDVTDRESVRELL 81 (259)
T ss_dssp CCSEEEEETTTSHHHHHHHHHHHHHTCS------EEEEEESSGGGSTTHHHHHHHHHHTTCEEEEEECCTTCHHHHHHHH
T ss_pred CcCEEEEECCCcHHHHHHHHHHHHCCCC------EEEEEeCCccCHHHHHHHHHHHHhccccccccccccchHHHHHHhh
Confidence 3457999999999999999999998751 5788765421 1222323333332111 1123443333333322
Q ss_pred ---C---CCcEEEEecCCCCCCC---CChh---HHHhhhHHHHHHHHHHHHhhcCCCcEEEEEeC
Q 019990 80 ---K---DVNIAVMVGGFPRKEG---MERK---DVMSKNVSIYKAQASALEKHAAPNCKVLVVAN 132 (332)
Q Consensus 80 ---~---~aDiVi~~ag~~~~~~---~~~~---~~~~~N~~~~~~i~~~i~~~~~~~~~viv~sn 132 (332)
. ..|.|||.+|...... .+.. ..+..|+.....+.+.+... +...++++|+
T Consensus 82 ~~i~~~~~i~~vv~~ag~~~~~~~~~~~~~~~~~~~~~~~~g~~~l~~~~~~~--~~~~iv~~SS 144 (259)
T d2fr1a1 82 GGIGDDVPLSAVFHAAATLDDGTVDTLTGERIERASRAKVLGARNLHELTREL--DLTAFVLFSS 144 (259)
T ss_dssp HTSCTTSCEEEEEECCCCCCCCCGGGCCHHHHHHHTHHHHHHHHHHHHHHTTS--CCSEEEEEEE
T ss_pred ccccccccccccccccccccccccccccHHHHHHHhhhhccchhHHHHHhhcc--CCceEeeecc
Confidence 2 3688999998754321 2222 24567888777777766654 3346666664
|
| >d2h7ma1 c.2.1.2 (A:2-269) Enoyl-ACP reductase {Mycobacterium tuberculosis, TB, gene InhA [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Enoyl-ACP reductase species: Mycobacterium tuberculosis, TB, gene InhA [TaxId: 1773]
Probab=97.46 E-value=5.9e-05 Score=64.38 Aligned_cols=36 Identities=17% Similarity=0.280 Sum_probs=30.4
Q ss_pred CCcEEEEEcCCCh--hHHHHHHHHHhcccCCCCCCeEEEEEeccc
Q 019990 4 NPLRVLVTGAAGQ--IGYALVPMIARGIMLGPDQPVILHMLDIEP 46 (332)
Q Consensus 4 ~~~kI~VtGaaG~--IGs~l~~~L~~~~~~~~~~~~~i~l~D~~~ 46 (332)
+.++++||||+|. ||.+++..|++.|. +|.+.+++.
T Consensus 5 ~gK~~lItGaag~~GIG~aiA~~la~~Ga-------~Vil~~~~~ 42 (268)
T d2h7ma1 5 DGKRILVSGIITDSSIAFHIARVAQEQGA-------QLVLTGFDR 42 (268)
T ss_dssp TTCEEEECCCSSTTCHHHHHHHHHHHTTC-------EEEEEECSC
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHcCC-------EEEEEeCCh
Confidence 4578999998764 99999999999885 899988754
|
| >d2pd4a1 c.2.1.2 (A:2-275) Enoyl-ACP reductase {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Enoyl-ACP reductase species: Helicobacter pylori [TaxId: 210]
Probab=97.44 E-value=0.00014 Score=62.22 Aligned_cols=162 Identities=14% Similarity=0.124 Sum_probs=82.8
Q ss_pred CCcEEEEEcCCC--hhHHHHHHHHHhcccCCCCCCeEEEEEecccchhhhhhhHhhhhhhccC---CccceEEeC-----
Q 019990 4 NPLRVLVTGAAG--QIGYALVPMIARGIMLGPDQPVILHMLDIEPAAEALNGVKMELIDAAFP---LLKGVVATT----- 73 (332)
Q Consensus 4 ~~~kI~VtGaaG--~IGs~l~~~L~~~~~~~~~~~~~i~l~D~~~~~~~~~~~~~dl~~~~~~---~~~~v~~~~----- 73 (332)
+.++++||||+| -||.+++..|++.|. +|++.|+++. +.....++...... ...++....
T Consensus 4 ~gK~alITGaag~~GIG~AiA~~la~~Ga-------~V~i~~r~~~---~~~~~~~l~~~~~~~~~~~~d~~~~~~~~~~ 73 (274)
T d2pd4a1 4 KGKKGLIVGVANNKSIAYGIAQSCFNQGA-------TLAFTYLNES---LEKRVRPIAQELNSPYVYELDVSKEEHFKSL 73 (274)
T ss_dssp TTCEEEEECCCSTTSHHHHHHHHHHTTTC-------EEEEEESSTT---THHHHHHHHHHTTCCCEEECCTTCHHHHHHH
T ss_pred CCCEEEEECCCCCcHHHHHHHHHHHHCCC-------EEEEEeCCHH---HHHHHHHHHhhCCceeEeeecccchhhHHHH
Confidence 467899999888 599999999999886 8999998642 22233333221111 111222211
Q ss_pred --CHHHHhCCCcEEEEecCCCCCC---CCC---hhHHHhhhH----HHHHHHHHHHHhhcCCCcEEEEEeCChhhHHHHH
Q 019990 74 --DVVEACKDVNIAVMVGGFPRKE---GME---RKDVMSKNV----SIYKAQASALEKHAAPNCKVLVVANPANTNALIL 141 (332)
Q Consensus 74 --~~~~a~~~aDiVi~~ag~~~~~---~~~---~~~~~~~N~----~~~~~i~~~i~~~~~~~~~viv~snp~~~~~~~~ 141 (332)
...+.+-..|++|+.+|..... +.. ..+....+. ...........+...+...+++.+. ....
T Consensus 74 ~~~~~~~~g~id~lV~nag~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~-~~~~---- 148 (274)
T d2pd4a1 74 YNSVKKDLGSLDFIVHSVAFAPKEALEGSLLETSKSAFNTAMEISVYSLIELTNTLKPLLNNGASVLTLSY-LGST---- 148 (274)
T ss_dssp HHHHHHHTSCEEEEEECCCCCCGGGGSSCGGGCCHHHHHHHHHHHTHHHHHHHHHHGGGEEEEEEEEEEEC-GGGT----
T ss_pred HHHHHHHcCCCCeEEeecccccccccccccccccchhhhhhhccccccccccccccccccccCcceeeecc-cccc----
Confidence 1223345789999998864221 111 111111111 1223333333333322233344443 2210
Q ss_pred HHHCCCCCCCcEEEeecccHHHHHHHHHHHcCCCCCCeeeeEEEec
Q 019990 142 KEFAPSIPAKNITCLTRLDHNRAMGQISERLKVHVSDVKNVIIWGN 187 (332)
Q Consensus 142 ~~~~~~~~~~~i~~~t~l~~~r~~~~~a~~~~v~~~~v~~~~V~G~ 187 (332)
...+....|+.++-.-..+.+.+|..++ +..||. +.+.+
T Consensus 149 ----~~~~~~~~y~asK~al~~ltr~lA~e~~--~~GIrv-N~I~P 187 (274)
T d2pd4a1 149 ----KYMAHYNVMGLAKAALESAVRYLAVDLG--KHHIRV-NALSA 187 (274)
T ss_dssp ----SBCTTCHHHHHHHHHHHHHHHHHHHHHH--TTTCEE-EEEEE
T ss_pred ----cccccchhhhHHHHHHHHHHHhhHHHhc--CcCcee-ccccc
Confidence 1122222456666667777777887765 455663 43443
|
| >d1jtva_ c.2.1.2 (A:) Human estrogenic 17beta-hydroxysteroid dehydrogenase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Human estrogenic 17beta-hydroxysteroid dehydrogenase species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.36 E-value=0.00029 Score=60.83 Aligned_cols=157 Identities=18% Similarity=0.165 Sum_probs=85.4
Q ss_pred cEE-EEEcCCChhHHHHHHHHHhcccCCCCCCeEEEEEe---cccc-hhhhhhhHhhhhhhc---cCCccceEEeCCHHH
Q 019990 6 LRV-LVTGAAGQIGYALVPMIARGIMLGPDQPVILHMLD---IEPA-AEALNGVKMELIDAA---FPLLKGVVATTDVVE 77 (332)
Q Consensus 6 ~kI-~VtGaaG~IGs~l~~~L~~~~~~~~~~~~~i~l~D---~~~~-~~~~~~~~~dl~~~~---~~~~~~v~~~~~~~~ 77 (332)
+|| +||||++-||.+++..|++.|. .+++++ .+.. .+.+......+.... .....|++...+..+
T Consensus 2 kkVvlITGassGIG~a~A~~la~~Ga-------~v~~v~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~Dv~~~~~~~~ 74 (285)
T d1jtva_ 2 RTVVLITGCSSGIGLHLAVRLASDPS-------QSFKVYATLRDLKTQGRLWEAARALACPPGSLETLQLDVRDSKSVAA 74 (285)
T ss_dssp CEEEEESCCSSHHHHHHHHHHHTCTT-------CCEEEEEEESCGGGTHHHHHHHHHTTCCTTSEEEEECCTTCHHHHHH
T ss_pred CCEEEEccCCCHHHHHHHHHHHHCCC-------CeEEEEEecCChhhhHHHHHHHHHHhccCCceEEEeccccchHhhhh
Confidence 455 6789999999999999998774 333333 2211 011111111111100 011134433333333
Q ss_pred Hh-----CCCcEEEEecCCCCCCC---CChh---HHHhhhHHH----HHHHHHHHHhhcCCCcEEEEEeCChhhHHHHHH
Q 019990 78 AC-----KDVNIAVMVGGFPRKEG---MERK---DVMSKNVSI----YKAQASALEKHAAPNCKVLVVANPANTNALILK 142 (332)
Q Consensus 78 a~-----~~aDiVi~~ag~~~~~~---~~~~---~~~~~N~~~----~~~i~~~i~~~~~~~~~viv~snp~~~~~~~~~ 142 (332)
++ ...|++|+.||...... .+.+ ..++.|+.. ++.++..+.+.+ .+.+|++|+-...
T Consensus 75 ~~~~~~~g~idilvnnag~~~~~~~~~~~~e~~~~~~~vN~~g~~~~~~~~lp~m~~~~--~G~Iv~isS~~g~------ 146 (285)
T d1jtva_ 75 ARERVTEGRVDVLVCNAGLGLLGPLEALGEDAVASVLDVNVVGTVRMLQAFLPDMKRRG--SGRVLVTGSVGGL------ 146 (285)
T ss_dssp HHHTCTTSCCSEEEECCCCCCCSCGGGSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHT--CEEEEEEEEGGGT------
T ss_pred hhhhccccchhhhhhcccccccccccchhHhhhhhhhhcchhHHHHHHHHHHHHHHHcC--CCceEEEechhhc------
Confidence 22 24799999998743221 2222 245667554 455666666653 4677777753321
Q ss_pred HHCCCCCCCcEEEeecccHHHHHHHHHHHcCCCCCCeeee
Q 019990 143 EFAPSIPAKNITCLTRLDHNRAMGQISERLKVHVSDVKNV 182 (332)
Q Consensus 143 ~~~~~~~~~~i~~~t~l~~~r~~~~~a~~~~v~~~~v~~~ 182 (332)
.+.|..-.|+.+|-.-..|...++..+. +..||..
T Consensus 147 ---~~~~~~~~Y~asKaal~~l~~~la~El~--~~gIrVn 181 (285)
T d1jtva_ 147 ---MGLPFNDVYCASKFALEGLCESLAVLLL--PFGVHLS 181 (285)
T ss_dssp ---SCCTTCHHHHHHHHHHHHHHHHHHHHHG--GGTEEEE
T ss_pred ---CCCCCchHHHHHHHHHHHHHHHHHHHhh--ccCcEEE
Confidence 2233344677888888888888888764 5567653
|
| >d2g17a1 c.2.1.3 (A:1-153,A:309-334) N-acetyl-gamma-glutamyl-phosphate reductase ArgC {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: N-acetyl-gamma-glutamyl-phosphate reductase ArgC species: Salmonella typhimurium [TaxId: 90371]
Probab=97.35 E-value=0.00034 Score=56.03 Aligned_cols=78 Identities=19% Similarity=0.286 Sum_probs=43.7
Q ss_pred CcEEEEEcCCChhHHHHHHHHHhcccCCCCCCeEEEEEecccchhhhhhhHhhhhhhccC--CccceEEeCCHHHHhCCC
Q 019990 5 PLRVLVTGAAGQIGYALVPMIARGIMLGPDQPVILHMLDIEPAAEALNGVKMELIDAAFP--LLKGVVATTDVVEACKDV 82 (332)
Q Consensus 5 ~~kI~VtGaaG~IGs~l~~~L~~~~~~~~~~~~~i~l~D~~~~~~~~~~~~~dl~~~~~~--~~~~v~~~~~~~~a~~~a 82 (332)
|+||+|+||+|++|.-|++.|..... .++.-+-.... +...|....-.+.... ....+....+......++
T Consensus 1 MikVaIiGATGyvG~eLlrlL~~HP~------~ei~~l~~~s~-~~~aGk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 73 (179)
T d2g17a1 1 MLNTLIVGASGYAGAELVSYVNRHPH------MTITALTVSAQ-SNDAGKLISDLHPQLKGIVDLPLQPMSDVRDFSADV 73 (179)
T ss_dssp CEEEEEETTTSHHHHHHHHHHHHCTT------EEEEEEEEETT-CTTTTCBHHHHCGGGTTTCCCBEEEESCGGGTCTTC
T ss_pred CcEEEEECcccHHHHHHHHHHHhCCC------CceEeeEeecc-cccccccccccccccccccccccccchhhhhhhccc
Confidence 68999999999999999999887643 25544422111 1112221111111111 112233344545556789
Q ss_pred cEEEEec
Q 019990 83 NIAVMVG 89 (332)
Q Consensus 83 DiVi~~a 89 (332)
|+||.+.
T Consensus 74 dvvf~al 80 (179)
T d2g17a1 74 DVVFLAT 80 (179)
T ss_dssp CEEEECS
T ss_pred ceeeccc
Confidence 9998864
|
| >d1i36a2 c.2.1.6 (A:1-152) Conserved hypothetical protein MTH1747 {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Conserved hypothetical protein MTH1747 species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]
Probab=97.28 E-value=0.00021 Score=55.57 Aligned_cols=64 Identities=14% Similarity=0.059 Sum_probs=44.1
Q ss_pred cEEEEEcCCChhHHHHHHHHHhcccCCCCCCeEEEEEecccchhhhhhhHhhhhhhccCCccceEEeCCHHHHhCCCcEE
Q 019990 6 LRVLVTGAAGQIGYALVPMIARGIMLGPDQPVILHMLDIEPAAEALNGVKMELIDAAFPLLKGVVATTDVVEACKDVNIA 85 (332)
Q Consensus 6 ~kI~VtGaaG~IGs~l~~~L~~~~~~~~~~~~~i~l~D~~~~~~~~~~~~~dl~~~~~~~~~~v~~~~~~~~a~~~aDiV 85 (332)
|||+|+| .|.+|+.++..|++.++ ++..+|..... ... . .... ..+. .+..++++++|+|
T Consensus 1 MkIgiIG-~G~mG~~ia~~l~~~g~-------~v~~~~~~~~~-~~~-~---~~~~-----~~~~--~~~~e~~~~~diI 60 (152)
T d1i36a2 1 LRVGFIG-FGEVAQTLASRLRSRGV-------EVVTSLEGRSP-STI-E---RART-----VGVT--ETSEEDVYSCPVV 60 (152)
T ss_dssp CEEEEES-CSHHHHHHHHHHHHTTC-------EEEECCTTCCH-HHH-H---HHHH-----HTCE--ECCHHHHHTSSEE
T ss_pred CEEEEEc-HHHHHHHHHHHHHHCCC-------eEEEEcCchhH-HHH-H---hhhc-----cccc--ccHHHHHhhcCeE
Confidence 6899999 79999999999999886 78888865421 111 1 1111 0122 2346788999999
Q ss_pred EEec
Q 019990 86 VMVG 89 (332)
Q Consensus 86 i~~a 89 (332)
|.+.
T Consensus 61 i~~v 64 (152)
T d1i36a2 61 ISAV 64 (152)
T ss_dssp EECS
T ss_pred EEEe
Confidence 9873
|
| >d1yqga2 c.2.1.6 (A:1-152) Pyrroline-5-carboxylate reductase ProC {Neisseria meningitidis, serogroup B [TaxId: 487]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Pyrroline-5-carboxylate reductase ProC species: Neisseria meningitidis, serogroup B [TaxId: 487]
Probab=97.27 E-value=0.00024 Score=55.26 Aligned_cols=64 Identities=13% Similarity=0.176 Sum_probs=43.3
Q ss_pred cEEEEEcCCChhHHHHHHHHHhcccCCCCCCeEEEEEecccchhhhhhhHhhhhhhccCCccceEEeCCHHHHhCCCcEE
Q 019990 6 LRVLVTGAAGQIGYALVPMIARGIMLGPDQPVILHMLDIEPAAEALNGVKMELIDAAFPLLKGVVATTDVVEACKDVNIA 85 (332)
Q Consensus 6 ~kI~VtGaaG~IGs~l~~~L~~~~~~~~~~~~~i~l~D~~~~~~~~~~~~~dl~~~~~~~~~~v~~~~~~~~a~~~aDiV 85 (332)
|||+++| +|.+|++++..|+..+. .++.++|++. ++++. +... ..+....+. ++++++|+|
T Consensus 1 MkI~fIG-~G~MG~ai~~~l~~~~~------~~i~v~~r~~--~~~~~----l~~~-----~~~~~~~~~-~~v~~~Div 61 (152)
T d1yqga2 1 MNVYFLG-GGNMAAAVAGGLVKQGG------YRIYIANRGA--EKRER----LEKE-----LGVETSATL-PELHSDDVL 61 (152)
T ss_dssp CEEEEEC-CSHHHHHHHHHHHHHCS------CEEEEECSSH--HHHHH----HHHH-----TCCEEESSC-CCCCTTSEE
T ss_pred CEEEEEc-CcHHHHHHHHHHHHCCC------CcEEEEeCCh--hHHHH----hhhh-----ccccccccc-ccccccceE
Confidence 5899999 69999999999887652 2899999864 23322 2111 023333443 457889999
Q ss_pred EEe
Q 019990 86 VMV 88 (332)
Q Consensus 86 i~~ 88 (332)
|++
T Consensus 62 ~la 64 (152)
T d1yqga2 62 ILA 64 (152)
T ss_dssp EEC
T ss_pred EEe
Confidence 986
|
| >d1jaya_ c.2.1.6 (A:) Coenzyme F420H2:NADP+ oxidoreductase (FNO) {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Coenzyme F420H2:NADP+ oxidoreductase (FNO) species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]
Probab=97.25 E-value=0.00018 Score=57.50 Aligned_cols=45 Identities=20% Similarity=0.172 Sum_probs=35.7
Q ss_pred cEEEEEcCCChhHHHHHHHHHhcccCCCCCCeEEEEEecccchhhhhhhHhhhh
Q 019990 6 LRVLVTGAAGQIGYALVPMIARGIMLGPDQPVILHMLDIEPAAEALNGVKMELI 59 (332)
Q Consensus 6 ~kI~VtGaaG~IGs~l~~~L~~~~~~~~~~~~~i~l~D~~~~~~~~~~~~~dl~ 59 (332)
|||+|+||+|.+|++++..|+..|+ +|.+.++++ ++++....++.
T Consensus 1 Mki~vigGaG~iG~alA~~la~~G~-------~V~l~~R~~--e~~~~l~~~i~ 45 (212)
T d1jaya_ 1 MRVALLGGTGNLGKGLALRLATLGH-------EIVVGSRRE--EKAEAKAAEYR 45 (212)
T ss_dssp CEEEEETTTSHHHHHHHHHHHTTTC-------EEEEEESSH--HHHHHHHHHHH
T ss_pred CEEEEEeCCcHHHHHHHHHHHHCCC-------EEEEEECCH--HHHHHHHHHHH
Confidence 6899998799999999999999987 899999864 34544444443
|
| >d1lssa_ c.2.1.9 (A:) Ktn Mja218 {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Potassium channel NAD-binding domain domain: Ktn Mja218 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=97.25 E-value=0.00013 Score=55.32 Aligned_cols=71 Identities=18% Similarity=0.385 Sum_probs=44.9
Q ss_pred cEEEEEcCCChhHHHHHHHHHhcccCCCCCCeEEEEEecccchhhhhhhHhhhhhhccCCccceEEeCCHHHH-hCCCcE
Q 019990 6 LRVLVTGAAGQIGYALVPMIARGIMLGPDQPVILHMLDIEPAAEALNGVKMELIDAAFPLLKGVVATTDVVEA-CKDVNI 84 (332)
Q Consensus 6 ~kI~VtGaaG~IGs~l~~~L~~~~~~~~~~~~~i~l~D~~~~~~~~~~~~~dl~~~~~~~~~~v~~~~~~~~a-~~~aDi 84 (332)
|||+|+| .|.+|++++..|...|+ +++++|.++ ++.+....++ +.. ...++......+.++ ++++|.
T Consensus 1 M~IvI~G-~G~~G~~la~~L~~~g~-------~v~vid~d~--~~~~~~~~~~-~~~-vi~Gd~~~~~~l~~~~i~~a~~ 68 (132)
T d1lssa_ 1 MYIIIAG-IGRVGYTLAKSLSEKGH-------DIVLIDIDK--DICKKASAEI-DAL-VINGDCTKIKTLEDAGIEDADM 68 (132)
T ss_dssp CEEEEEC-CSHHHHHHHHHHHHTTC-------EEEEEESCH--HHHHHHHHHC-SSE-EEESCTTSHHHHHHTTTTTCSE
T ss_pred CEEEEEC-CCHHHHHHHHHHHHCCC-------CcceecCCh--hhhhhhhhhh-hhh-hccCcccchhhhhhcChhhhhh
Confidence 6899999 59999999999998886 899999864 3333221111 110 111233222334443 578998
Q ss_pred EEEe
Q 019990 85 AVMV 88 (332)
Q Consensus 85 Vi~~ 88 (332)
++.+
T Consensus 69 vv~~ 72 (132)
T d1lssa_ 69 YIAV 72 (132)
T ss_dssp EEEC
T ss_pred hccc
Confidence 8876
|
| >d1oaaa_ c.2.1.2 (A:) Sepiapterin reductase {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Sepiapterin reductase species: Mouse (Mus musculus) [TaxId: 10090]
Probab=97.20 E-value=0.00072 Score=57.24 Aligned_cols=159 Identities=13% Similarity=0.099 Sum_probs=89.5
Q ss_pred cEEEEEcCCChhHHHHHHHHHh---cccCCCCCCeEEEEEecccchhhhhhhHhhhhhhc-----cCCccceEEeCCHHH
Q 019990 6 LRVLVTGAAGQIGYALVPMIAR---GIMLGPDQPVILHMLDIEPAAEALNGVKMELIDAA-----FPLLKGVVATTDVVE 77 (332)
Q Consensus 6 ~kI~VtGaaG~IGs~l~~~L~~---~~~~~~~~~~~i~l~D~~~~~~~~~~~~~dl~~~~-----~~~~~~v~~~~~~~~ 77 (332)
+.++||||++.||.+++..|++ .|. .|++.|++. +.++....++.... .....|++...+..+
T Consensus 7 KvalITGas~GIG~aiA~~lA~~~~~G~-------~Vv~~~r~~--~~l~~~~~~l~~~~~~~~~~~~~~Dvs~~~~v~~ 77 (259)
T d1oaaa_ 7 AVCVLTGASRGFGRALAPQLARLLSPGS-------VMLVSARSE--SMLRQLKEELGAQQPDLKVVLAAADLGTEAGVQR 77 (259)
T ss_dssp EEEEESSCSSHHHHHHHHHHHTTBCTTC-------EEEEEESCH--HHHHHHHHHHHHHCTTSEEEEEECCTTSHHHHHH
T ss_pred CEEEEeCCCCHHHHHHHHHHHhcccCCC-------EEEEEECCH--HHHHHHHHHHHhhcCCceEEEEEccCCCHHHHHH
Confidence 4467889999999999999986 343 899999864 45555545553211 111234433333222
Q ss_pred Hh-----------CCCcEEEEecCCCCC--C----CCChh---HHHhhhHHHHHHHHHHHHhhcC--C--CcEEEEEeCC
Q 019990 78 AC-----------KDVNIAVMVGGFPRK--E----GMERK---DVMSKNVSIYKAQASALEKHAA--P--NCKVLVVANP 133 (332)
Q Consensus 78 a~-----------~~aDiVi~~ag~~~~--~----~~~~~---~~~~~N~~~~~~i~~~i~~~~~--~--~~~viv~snp 133 (332)
.+ -+.|++|+.||.... . ..+.+ ..+..|+.....+.+.+..+-. + .+.++++|+-
T Consensus 78 l~~~~~~~~~~~~~~~~~lvnnag~~~~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~~~~m~~~~~~~g~Iv~isS~ 157 (259)
T d1oaaa_ 78 LLSAVRELPRPEGLQRLLLINNAATLGDVSKGFLNVNDLAEVNNYWALNLTSMLCLTSGTLNAFQDSPGLSKTVVNISSL 157 (259)
T ss_dssp HHHHHHHSCCCTTCCEEEEEECCCCCCCCSSCGGGCCCHHHHHHHHHHHTHHHHHHHHHHHHTSCCCTTCEEEEEEECCG
T ss_pred HHHHHHHhhhhccCceEEEEecccccccCCCCccccCCHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcccccccccc
Confidence 21 134577777775321 1 12222 3466787776666666554421 1 2456666653
Q ss_pred hhhHHHHHHHHCCCCCCCcEEEeecccHHHHHHHHHHHcCCCCCCeeeeEEEec
Q 019990 134 ANTNALILKEFAPSIPAKNITCLTRLDHNRAMGQISERLKVHVSDVKNVIIWGN 187 (332)
Q Consensus 134 ~~~~~~~~~~~~~~~~~~~i~~~t~l~~~r~~~~~a~~~~v~~~~v~~~~V~G~ 187 (332)
... .+.+..-.|+.+|-.-..+.+.+|.. +..||. +.+.+
T Consensus 158 ~~~---------~~~~~~~~Y~asKaal~~lt~~la~e----~~gIrV-n~v~P 197 (259)
T d1oaaa_ 158 CAL---------QPYKGWGLYCAGKAARDMLYQVLAAE----EPSVRV-LSYAP 197 (259)
T ss_dssp GGT---------SCCTTCHHHHHHHHHHHHHHHHHHHH----CTTEEE-EEEEC
T ss_pred ccc---------CCCccchHHHHHHHHHHHHHHHHHhC----CCCCEE-EEEEc
Confidence 221 22333335677777777777777766 457885 44554
|
| >d1yo6a1 c.2.1.2 (A:1-250) Putative carbonyl reductase sniffer {Caenorhabditis elegans [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Putative carbonyl reductase sniffer species: Caenorhabditis elegans [TaxId: 6239]
Probab=97.20 E-value=0.0002 Score=60.52 Aligned_cols=166 Identities=16% Similarity=0.120 Sum_probs=86.6
Q ss_pred CcEEEEEcCCChhHHHHHHHHHhcccCCCCCCeEEEEEecccchhhhhhhHhhhhhhcc-CCccceEEeCCHHHH-----
Q 019990 5 PLRVLVTGAAGQIGYALVPMIARGIMLGPDQPVILHMLDIEPAAEALNGVKMELIDAAF-PLLKGVVATTDVVEA----- 78 (332)
Q Consensus 5 ~~kI~VtGaaG~IGs~l~~~L~~~~~~~~~~~~~i~l~D~~~~~~~~~~~~~dl~~~~~-~~~~~v~~~~~~~~a----- 78 (332)
++.|+||||++-||..++..|++.|.. ..|.+.+++. ++++.... ...... ....|++...++.++
T Consensus 3 ~KtilITGassGIG~a~a~~la~~G~~-----~~Vi~~~R~~--~~~~~l~~-~~~~~~~~~~~Dvs~~~~v~~~~~~i~ 74 (250)
T d1yo6a1 3 PGSVVVTGANRGIGLGLVQQLVKDKNI-----RHIIATARDV--EKATELKS-IKDSRVHVLPLTVTCDKSLDTFVSKVG 74 (250)
T ss_dssp CSEEEESSCSSHHHHHHHHHHHTCTTC-----CEEEEEESSG--GGCHHHHT-CCCTTEEEEECCTTCHHHHHHHHHHHH
T ss_pred CCEEEEeCCCCHHHHHHHHHHHHCCCC-----CEEEEEeCCH--HHHHHHHH-hhCCceEEEEEecCCHHHHHHHHHHHH
Confidence 578999999999999999999987731 2577777653 23332111 111111 112233322222221
Q ss_pred --hC--CCcEEEEecCCCCC--C--CCChh---HHHhhhHHHH----HHHHHHHHhhcC---------CCcEEEEEeCCh
Q 019990 79 --CK--DVNIAVMVGGFPRK--E--GMERK---DVMSKNVSIY----KAQASALEKHAA---------PNCKVLVVANPA 134 (332)
Q Consensus 79 --~~--~aDiVi~~ag~~~~--~--~~~~~---~~~~~N~~~~----~~i~~~i~~~~~---------~~~~viv~snp~ 134 (332)
+. +.|++|+.||.... + ..+.+ ..++.|+... +.++..+++... ..+.++..+...
T Consensus 75 ~~~~~~~idilinnAG~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~p~l~~~~~~~~~~~~~~~~~~~i~~s~~~ 154 (250)
T d1yo6a1 75 EIVGSDGLSLLINNAGVLLSYGTNTEPNRAVIAEQLDVNTTSVVLLTQKLLPLLKNAASKESGDQLSVSRAAVITISSGL 154 (250)
T ss_dssp HHHGGGCCCEEEECCCCCCCBCTTSCCCHHHHHHHHHHHTHHHHHHHHHTHHHHHHHHHSSCSSCCCTTTCEEEEECCGG
T ss_pred HHhCCCCeEEEEEcCcccCCCCccccCCHHHHHHHHHHHhhhHHHHHHHHHHHHHHhccCCCCccccceecccccccccc
Confidence 21 38999999997322 1 22222 3456675444 444555544321 123455555432
Q ss_pred hhHHHHHHHHCCCCCCCcEEEeecccHHHHHHHHHHHcCCCCCCeeee
Q 019990 135 NTNALILKEFAPSIPAKNITCLTRLDHNRAMGQISERLKVHVSDVKNV 182 (332)
Q Consensus 135 ~~~~~~~~~~~~~~~~~~i~~~t~l~~~r~~~~~a~~~~v~~~~v~~~ 182 (332)
......... ....+..-|+.+|.....+.+.+++.+. +..|+..
T Consensus 155 ~~~~~~~~~--~~~~~~~aY~aSKaal~~l~~~la~el~--~~gI~v~ 198 (250)
T d1yo6a1 155 GSITDNTSG--SAQFPVLAYRMSKAAINMFGRTLAVDLK--DDNVLVV 198 (250)
T ss_dssp GCSTTCCST--TSSSCBHHHHHHHHHHHHHHHHHHHHTG--GGTCEEE
T ss_pred ccccCCccc--ccchhHHHHHHHHHHHHHHHHHHHHHhc--ccCeEEE
Confidence 211110000 0111122377788888888888888864 5567743
|
| >d1uaya_ c.2.1.2 (A:) Type II 3-hydroxyacyl-CoA dehydrogenase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Type II 3-hydroxyacyl-CoA dehydrogenase species: Thermus thermophilus [TaxId: 274]
Probab=97.15 E-value=0.00022 Score=59.49 Aligned_cols=158 Identities=15% Similarity=0.044 Sum_probs=81.4
Q ss_pred cEEEEEcCCChhHHHHHHHHHhcccCCCCCCeEEEEEecccchhhhhhhHhhhhhhccCCccceEEeCCHHHHhCCCcEE
Q 019990 6 LRVLVTGAAGQIGYALVPMIARGIMLGPDQPVILHMLDIEPAAEALNGVKMELIDAAFPLLKGVVATTDVVEACKDVNIA 85 (332)
Q Consensus 6 ~kI~VtGaaG~IGs~l~~~L~~~~~~~~~~~~~i~l~D~~~~~~~~~~~~~dl~~~~~~~~~~v~~~~~~~~a~~~aDiV 85 (332)
++++||||++.||.+++..|++.|. +|.+.|++...........|+.+. ................+.+
T Consensus 2 K~alITGas~GIG~aiA~~la~~Ga-------~V~i~~~~~~~~~~~~~~~d~~~~-----~~~~~~~~~~~~~~~~~~~ 69 (241)
T d1uaya_ 2 RSALVTGGASGLGRAAALALKARGY-------RVVVLDLRREGEDLIYVEGDVTRE-----EDVRRAVARAQEEAPLFAV 69 (241)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHHTC-------EEEEEESSCCSSSSEEEECCTTCH-----HHHHHHHHHHHHHSCEEEE
T ss_pred CEEEEeCCCCHHHHHHHHHHHHCCC-------EEEEEECCcccccceEeeccccch-----hhhHHHHHhhhccccccch
Confidence 5789999999999999999999886 899999864211111111111110 0000000001112233444
Q ss_pred EEecCCCC------CCC-CC---hhHHHhhhHHHHHHHHHHHHhh----c----CCCcEEEEEeCChhhHHHHHHHHCCC
Q 019990 86 VMVGGFPR------KEG-ME---RKDVMSKNVSIYKAQASALEKH----A----APNCKVLVVANPANTNALILKEFAPS 147 (332)
Q Consensus 86 i~~ag~~~------~~~-~~---~~~~~~~N~~~~~~i~~~i~~~----~----~~~~~viv~snp~~~~~~~~~~~~~~ 147 (332)
+..++... ... .+ ....++.|......+...+... . ...+.+|++|+.... .+
T Consensus 70 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~G~Ii~isS~~~~---------~~ 140 (241)
T d1uaya_ 70 VSAAGVGLAEKILGKEGPHGLESFRRVLEVNLLGTFNVLRLAAWAMRENPPDAEGQRGVIVNTASVAAF---------EG 140 (241)
T ss_dssp EECCCCCCCCCSBCSSSBCCHHHHHHHHHHHTHHHHHHHHHHHHHHTTCCCCTTSCSEEEEEECCTHHH---------HC
T ss_pred hhhhhccccccccccccchhHHHHHHHHHHHhhhhHHHHHHHHHHhhhhhhhcccCceeeeeecchhhc---------cC
Confidence 44443211 001 11 1234555655444444433222 0 123567777753221 12
Q ss_pred CCCCcEEEeecccHHHHHHHHHHHcCCCCCCeeeeEEEec
Q 019990 148 IPAKNITCLTRLDHNRAMGQISERLKVHVSDVKNVIIWGN 187 (332)
Q Consensus 148 ~~~~~i~~~t~l~~~r~~~~~a~~~~v~~~~v~~~~V~G~ 187 (332)
.+..-.|+.+|-.-..+.+.+|..++ +..||. +.+-+
T Consensus 141 ~~~~~~Y~asKaal~~lt~~lA~ela--~~gIrV-N~V~P 177 (241)
T d1uaya_ 141 QIGQAAYAASKGGVVALTLPAARELA--GWGIRV-VTVAP 177 (241)
T ss_dssp CTTCHHHHHHHHHHHHHHHHHHHHHG--GGTEEE-EEEEE
T ss_pred CCCchhhHHHHHHHHHHHHHHHHHHh--hcCCce-eeecC
Confidence 33333577788778888888888876 566774 44444
|
| >d2cvoa1 c.2.1.3 (A:68-218,A:384-415) Putative semialdehyde dehydrogenase {Rice (Oryza sativa) [TaxId: 4530]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Putative semialdehyde dehydrogenase species: Rice (Oryza sativa) [TaxId: 4530]
Probab=97.10 E-value=0.00033 Score=56.36 Aligned_cols=36 Identities=22% Similarity=0.389 Sum_probs=29.0
Q ss_pred CCCcEEEEEcCCChhHHHHHHHHHhcccCCCCCCeEEEEEec
Q 019990 3 KNPLRVLVTGAAGQIGYALVPMIARGIMLGPDQPVILHMLDI 44 (332)
Q Consensus 3 ~~~~kI~VtGaaG~IGs~l~~~L~~~~~~~~~~~~~i~l~D~ 44 (332)
.++.||+|+||+|++|+-++..|..... .++..+--
T Consensus 3 ~~kikVaIlGATGyvG~elirLL~~HP~------~ei~~l~S 38 (183)
T d2cvoa1 3 GEEVRIAVLGASGYTGAEIVRLLANHPQ------FRIKVMTA 38 (183)
T ss_dssp SSCEEEEEESCSSHHHHHHHHHHTTCSS------EEEEEEEC
T ss_pred CCccEEEEECcccHHHHHHHHHHHhCCC------ceEEEEec
Confidence 4678999999999999999999887653 36766643
|
| >d2hjsa1 c.2.1.3 (A:3-129,A:320-336) Usg-1 protein homolog PA3116 {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Usg-1 protein homolog PA3116 species: Pseudomonas aeruginosa [TaxId: 287]
Probab=97.04 E-value=0.00028 Score=54.51 Aligned_cols=72 Identities=25% Similarity=0.307 Sum_probs=42.5
Q ss_pred CCcEEEEEcCCChhHHHHHHHHHhcccCCCCCCeEEEEEecccchhhhhhhHhhhhhhccCCccceEEeCCHHHHhCCCc
Q 019990 4 NPLRVLVTGAAGQIGYALVPMIARGIMLGPDQPVILHMLDIEPAAEALNGVKMELIDAAFPLLKGVVATTDVVEACKDVN 83 (332)
Q Consensus 4 ~~~kI~VtGaaG~IGs~l~~~L~~~~~~~~~~~~~i~l~D~~~~~~~~~~~~~dl~~~~~~~~~~v~~~~~~~~a~~~aD 83 (332)
++|||+|+||+|++|+-++..|.+.++ +..++.++..+. ..|..... ...++.......+.+.++|
T Consensus 1 q~mnVaIvGATGyvG~eli~lL~~~~h----P~~~l~~~~s~~----~~Gk~i~~------~~~~~~~~~~~~~~~~~~d 66 (144)
T d2hjsa1 1 QPLNVAVVGATGSVGEALVGLLDERDF----PLHRLHLLASAE----SAGQRMGF------AESSLRVGDVDSFDFSSVG 66 (144)
T ss_dssp CCCCEEEETTTSHHHHHHHHHHHHTTC----CCSCEEEEECTT----TTTCEEEE------TTEEEECEEGGGCCGGGCS
T ss_pred CCCEEEEECCCCHHHHHHHHHHHhcCC----CceEEEEEeecc----cCCcceee------ccccchhccchhhhhccce
Confidence 578999999999999999998865432 113677775432 12221111 1112222222234467899
Q ss_pred EEEEec
Q 019990 84 IAVMVG 89 (332)
Q Consensus 84 iVi~~a 89 (332)
++|+++
T Consensus 67 ~vf~a~ 72 (144)
T d2hjsa1 67 LAFFAA 72 (144)
T ss_dssp EEEECS
T ss_pred EEEecC
Confidence 988865
|
| >d1e5qa1 c.2.1.3 (A:2-124,A:392-450) Saccharopine reductase {Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Saccharopine reductase species: Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]
Probab=97.00 E-value=0.0003 Score=55.63 Aligned_cols=73 Identities=8% Similarity=0.092 Sum_probs=44.6
Q ss_pred CcEEEEEcCCChhHHHHHHHHHhcccCCCCCCeEEEEEecccchhhhhhhHhhhhhhccCCccceEEeCCHHHHhCCCcE
Q 019990 5 PLRVLVTGAAGQIGYALVPMIARGIMLGPDQPVILHMLDIEPAAEALNGVKMELIDAAFPLLKGVVATTDVVEACKDVNI 84 (332)
Q Consensus 5 ~~kI~VtGaaG~IGs~l~~~L~~~~~~~~~~~~~i~l~D~~~~~~~~~~~~~dl~~~~~~~~~~v~~~~~~~~a~~~aDi 84 (332)
.++|+|+| +|++|++++..|.+.|+ +|+++|++. +++......+..... ...+........+.+...|.
T Consensus 2 ~K~IliiG-aG~~G~~~a~~L~~~g~-------~V~v~dr~~--~~a~~l~~~~~~~~~-~~~~~~~~~~~~~~i~~~~~ 70 (182)
T d1e5qa1 2 TKSVLMLG-SGFVTRPTLDVLTDSGI-------KVTVACRTL--ESAKKLSAGVQHSTP-ISLDVNDDAALDAEVAKHDL 70 (182)
T ss_dssp CCEEEEEC-CSTTHHHHHHHHHTTTC-------EEEEEESCH--HHHHHHHTTCTTEEE-EECCTTCHHHHHHHHTTSSE
T ss_pred CCEEEEEC-CCHHHHHHHHHHHhCCC-------EEEEEECCh--HHHHHHHhccccccc-ccccccchhhhHhhhhccce
Confidence 46899999 59999999999999886 899999864 333322222211100 00111111233455778888
Q ss_pred EEEe
Q 019990 85 AVMV 88 (332)
Q Consensus 85 Vi~~ 88 (332)
++.+
T Consensus 71 ~i~~ 74 (182)
T d1e5qa1 71 VISL 74 (182)
T ss_dssp EEEC
T ss_pred eEee
Confidence 8765
|
| >d1e7wa_ c.2.1.2 (A:) Dihydropteridin reductase (pteridine reductase) {Leishmania major [TaxId: 5664]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Dihydropteridin reductase (pteridine reductase) species: Leishmania major [TaxId: 5664]
Probab=96.92 E-value=0.0073 Score=51.12 Aligned_cols=32 Identities=22% Similarity=0.228 Sum_probs=27.6
Q ss_pred EEEEcCCChhHHHHHHHHHhcccCCCCCCeEEEEEeccc
Q 019990 8 VLVTGAAGQIGYALVPMIARGIMLGPDQPVILHMLDIEP 46 (332)
Q Consensus 8 I~VtGaaG~IGs~l~~~L~~~~~~~~~~~~~i~l~D~~~ 46 (332)
++||||++-||.+++..|++.|. +|++.+.+.
T Consensus 5 AlITGas~GIG~aiA~~la~~Ga-------~V~i~~~~~ 36 (284)
T d1e7wa_ 5 ALVTGAAKRLGRSIAEGLHAEGY-------AVCLHYHRS 36 (284)
T ss_dssp EEETTCSSHHHHHHHHHHHHTTC-------EEEEEESSC
T ss_pred EEEeCCCCHHHHHHHHHHHHcCC-------EEEEEeCCC
Confidence 56899999999999999999886 888877653
|
| >d1vkna1 c.2.1.3 (A:1-144,A:308-339) N-acetyl-gamma-glutamyl-phosphate reductase ArgC {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: N-acetyl-gamma-glutamyl-phosphate reductase ArgC species: Thermotoga maritima [TaxId: 2336]
Probab=96.91 E-value=0.00084 Score=53.48 Aligned_cols=74 Identities=19% Similarity=0.166 Sum_probs=42.2
Q ss_pred CcEEEEEcCCChhHHHHHHHHHhcccCCCCCCeEEEEEecccchhhhhhhHhhhhhhccCCccceEEeCCHHHHhCCCcE
Q 019990 5 PLRVLVTGAAGQIGYALVPMIARGIMLGPDQPVILHMLDIEPAAEALNGVKMELIDAAFPLLKGVVATTDVVEACKDVNI 84 (332)
Q Consensus 5 ~~kI~VtGaaG~IGs~l~~~L~~~~~~~~~~~~~i~l~D~~~~~~~~~~~~~dl~~~~~~~~~~v~~~~~~~~a~~~aDi 84 (332)
|+||+|+||+|++|.-++..|..... .++..+--+. ..|....-.+........+. ..+..+..+++|+
T Consensus 1 MikVaIvGATGyvG~eLirlL~~HP~------~ei~~l~s~~----~aG~~i~~~~p~~~~~~~~~-~~~~~~~~~~~dv 69 (176)
T d1vkna1 1 MIRAGIIGATGYTGLELVRLLKNHPE------AKITYLSSRT----YAGKKLEEIFPSTLENSILS-EFDPEKVSKNCDV 69 (176)
T ss_dssp CEEEEEESTTSHHHHHHHHHHHHCTT------EEEEEEECST----TTTSBHHHHCGGGCCCCBCB-CCCHHHHHHHCSE
T ss_pred CeEEEEECCCcHHHHHHHHHHHhCCC------ceEEEeeccc----cCCCcccccCchhhcccccc-ccCHhHhccccce
Confidence 67999999999999999998887543 3665553221 12221111111110111111 2344455578999
Q ss_pred EEEec
Q 019990 85 AVMVG 89 (332)
Q Consensus 85 Vi~~a 89 (332)
|+.+.
T Consensus 70 vf~a~ 74 (176)
T d1vkna1 70 LFTAL 74 (176)
T ss_dssp EEECC
T ss_pred EEEcc
Confidence 98764
|
| >d1gpja2 c.2.1.7 (A:144-302) Glutamyl tRNA-reductase middle domain {Archaeon Methanopyrus kandleri [TaxId: 2320]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Glutamyl tRNA-reductase middle domain species: Archaeon Methanopyrus kandleri [TaxId: 2320]
Probab=96.85 E-value=0.0019 Score=50.47 Aligned_cols=73 Identities=18% Similarity=0.207 Sum_probs=50.4
Q ss_pred CCcEEEEEcCCChhHHHHHHHHHhcccCCCCCCeEEEEEecccchhhhhhhHhhhhhhccCCccceEEeCCHHHHhCCCc
Q 019990 4 NPLRVLVTGAAGQIGYALVPMIARGIMLGPDQPVILHMLDIEPAAEALNGVKMELIDAAFPLLKGVVATTDVVEACKDVN 83 (332)
Q Consensus 4 ~~~kI~VtGaaG~IGs~l~~~L~~~~~~~~~~~~~i~l~D~~~~~~~~~~~~~dl~~~~~~~~~~v~~~~~~~~a~~~aD 83 (332)
+.++|+|+| +|.+|..++..|...+. .++.++.+.. ++.......+. .......++.+++.++|
T Consensus 23 ~~~~ilviG-aG~~g~~v~~~L~~~g~------~~i~v~nRt~--~ka~~l~~~~~-------~~~~~~~~~~~~l~~~D 86 (159)
T d1gpja2 23 HDKTVLVVG-AGEMGKTVAKSLVDRGV------RAVLVANRTY--ERAVELARDLG-------GEAVRFDELVDHLARSD 86 (159)
T ss_dssp TTCEEEEES-CCHHHHHHHHHHHHHCC------SEEEEECSSH--HHHHHHHHHHT-------CEECCGGGHHHHHHTCS
T ss_pred ccCeEEEEC-CCHHHHHHHHHHHhcCC------cEEEEEcCcH--HHHHHHHHhhh-------cccccchhHHHHhccCC
Confidence 467999999 59999999999998775 2788888753 23332222221 11222357788899999
Q ss_pred EEEEecCCC
Q 019990 84 IAVMVGGFP 92 (332)
Q Consensus 84 iVi~~ag~~ 92 (332)
+||.+.+.+
T Consensus 87 ivi~atss~ 95 (159)
T d1gpja2 87 VVVSATAAP 95 (159)
T ss_dssp EEEECCSSS
T ss_pred EEEEecCCC
Confidence 999987654
|
| >d2hmva1 c.2.1.9 (A:7-140) Ktn bsu222 {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Potassium channel NAD-binding domain domain: Ktn bsu222 species: Bacillus subtilis [TaxId: 1423]
Probab=96.78 E-value=0.00063 Score=51.38 Aligned_cols=70 Identities=16% Similarity=0.237 Sum_probs=45.6
Q ss_pred cEEEEEcCCChhHHHHHHHHHhcccCCCCCCeEEEEEecccchhhhhhhHhhhhhhcc-CCccceEEeCCHHHH-hCCCc
Q 019990 6 LRVLVTGAAGQIGYALVPMIARGIMLGPDQPVILHMLDIEPAAEALNGVKMELIDAAF-PLLKGVVATTDVVEA-CKDVN 83 (332)
Q Consensus 6 ~kI~VtGaaG~IGs~l~~~L~~~~~~~~~~~~~i~l~D~~~~~~~~~~~~~dl~~~~~-~~~~~v~~~~~~~~a-~~~aD 83 (332)
+|+.|+| .|.+|++++..|.+.|+ +++++|.++ ++++ ++.+... ...++.+....+.++ +.++|
T Consensus 1 k~~iIiG-~G~~G~~la~~L~~~g~-------~vvvid~d~--~~~~----~~~~~~~~~~~gd~~~~~~l~~a~i~~a~ 66 (134)
T d2hmva1 1 KQFAVIG-LGRFGGSIVKELHRMGH-------EVLAVDINE--EKVN----AYASYATHAVIANATEENELLSLGIRNFE 66 (134)
T ss_dssp CCEEEEC-CSHHHHHHHHHHHHTTC-------CCEEEESCH--HHHH----HTTTTCSEEEECCTTCTTHHHHHTGGGCS
T ss_pred CEEEEEC-CCHHHHHHHHHHHHCCC-------eEEEecCcH--HHHH----HHHHhCCcceeeecccchhhhccCCcccc
Confidence 4689999 69999999999999886 899999864 2332 2222111 112333333334454 68899
Q ss_pred EEEEec
Q 019990 84 IAVMVG 89 (332)
Q Consensus 84 iVi~~a 89 (332)
.||.+.
T Consensus 67 ~vi~~~ 72 (134)
T d2hmva1 67 YVIVAI 72 (134)
T ss_dssp EEEECC
T ss_pred EEEEEc
Confidence 988764
|
| >d1mxha_ c.2.1.2 (A:) Dihydropteridin reductase (pteridine reductase) {Trypanosoma cruzi [TaxId: 5693]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Dihydropteridin reductase (pteridine reductase) species: Trypanosoma cruzi [TaxId: 5693]
Probab=96.78 E-value=0.014 Score=48.80 Aligned_cols=33 Identities=15% Similarity=0.185 Sum_probs=29.5
Q ss_pred EEEEEcCCChhHHHHHHHHHhcccCCCCCCeEEEEEeccc
Q 019990 7 RVLVTGAAGQIGYALVPMIARGIMLGPDQPVILHMLDIEP 46 (332)
Q Consensus 7 kI~VtGaaG~IGs~l~~~L~~~~~~~~~~~~~i~l~D~~~ 46 (332)
-.+||||++-||.+++..|++.|. +|++.|++.
T Consensus 3 vAlVTGas~GIG~aia~~la~~G~-------~Vvi~~r~~ 35 (266)
T d1mxha_ 3 AAVITGGARRIGHSIAVRLHQQGF-------RVVVHYRHS 35 (266)
T ss_dssp EEEETTCSSHHHHHHHHHHHHTTC-------EEEEEESSC
T ss_pred EEEEeCCCCHHHHHHHHHHHHCCC-------EEEEEECCc
Confidence 358999999999999999999986 899999864
|
| >d1fjha_ c.2.1.2 (A:) 3-alpha-hydroxysteroid dehydrogenase {Comamonas testosteroni [TaxId: 285]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 3-alpha-hydroxysteroid dehydrogenase species: Comamonas testosteroni [TaxId: 285]
Probab=96.62 E-value=0.0032 Score=52.59 Aligned_cols=35 Identities=20% Similarity=0.211 Sum_probs=30.7
Q ss_pred CcEEEEEcCCChhHHHHHHHHHhcccCCCCCCeEEEEEeccc
Q 019990 5 PLRVLVTGAAGQIGYALVPMIARGIMLGPDQPVILHMLDIEP 46 (332)
Q Consensus 5 ~~kI~VtGaaG~IGs~l~~~L~~~~~~~~~~~~~i~l~D~~~ 46 (332)
|+-|+||||++.||.+++..|++.|. +|++.|++.
T Consensus 1 mkVvlITGas~GIG~aiA~~la~~Ga-------~V~~~~~~~ 35 (257)
T d1fjha_ 1 MSIIVISGCATGIGAATRKVLEAAGH-------QIVGIDIRD 35 (257)
T ss_dssp CCEEEEETTTSHHHHHHHHHHHHTTC-------EEEEEESSS
T ss_pred CCEEEEeCCCCHHHHHHHHHHHHCCC-------EEEEEECCh
Confidence 34679999999999999999999886 899999864
|
| >d2pgda2 c.2.1.6 (A:1-176) 6-phosphogluconate dehydrogenase {Sheep (Ovis orientalis aries) [TaxId: 9940]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: 6-phosphogluconate dehydrogenase species: Sheep (Ovis orientalis aries) [TaxId: 9940]
Probab=96.60 E-value=0.0084 Score=47.24 Aligned_cols=70 Identities=10% Similarity=0.170 Sum_probs=45.8
Q ss_pred cEEEEEcCCChhHHHHHHHHHhcccCCCCCCeEEEEEecccchhhhhhhHhhhhhhccCCcc--ceEEeCCHHHHhCCCc
Q 019990 6 LRVLVTGAAGQIGYALVPMIARGIMLGPDQPVILHMLDIEPAAEALNGVKMELIDAAFPLLK--GVVATTDVVEACKDVN 83 (332)
Q Consensus 6 ~kI~VtGaaG~IGs~l~~~L~~~~~~~~~~~~~i~l~D~~~~~~~~~~~~~dl~~~~~~~~~--~v~~~~~~~~a~~~aD 83 (332)
..|+|+| .|.+|++++.+|++.++ +|+.+|++. ++.+ ++......... ......++.+++.++|
T Consensus 3 ~nIg~IG-lG~MG~~mA~~L~~~G~-------~V~v~dr~~--~~~~----~l~~~~~~~~~~~~a~~~~~~~~~~~~~~ 68 (176)
T d2pgda2 3 ADIALIG-LAVMGQNLILNMNDHGF-------VVCAFNRTV--SKVD----DFLANEAKGTKVLGAHSLEEMVSKLKKPR 68 (176)
T ss_dssp BSEEEEC-CSHHHHHHHHHHHHTTC-------CEEEECSST--HHHH----HHHHTTTTTSSCEECSSHHHHHHHBCSSC
T ss_pred CcEEEEe-EhHHHHHHHHHHHHCCC-------eEEEEcCCH--HHHH----HHHHhccccccccchhhhhhhhhhhcccc
Confidence 4699999 89999999999999886 899999864 2332 22221110000 1111234556788999
Q ss_pred EEEEec
Q 019990 84 IAVMVG 89 (332)
Q Consensus 84 iVi~~a 89 (332)
.++.+.
T Consensus 69 ~ii~~~ 74 (176)
T d2pgda2 69 RIILLV 74 (176)
T ss_dssp EEEECS
T ss_pred eEEEec
Confidence 998863
|
| >d1d7oa_ c.2.1.2 (A:) Enoyl-ACP reductase {Oil seed rape (Brassica napus) [TaxId: 3708]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Enoyl-ACP reductase species: Oil seed rape (Brassica napus) [TaxId: 3708]
Probab=96.58 E-value=0.0039 Score=53.34 Aligned_cols=35 Identities=17% Similarity=0.176 Sum_probs=30.4
Q ss_pred CCcEEEEEcCCC--hhHHHHHHHHHhcccCCCCCCeEEEEEecc
Q 019990 4 NPLRVLVTGAAG--QIGYALVPMIARGIMLGPDQPVILHMLDIE 45 (332)
Q Consensus 4 ~~~kI~VtGaaG--~IGs~l~~~L~~~~~~~~~~~~~i~l~D~~ 45 (332)
+.++++||||+| -||..++..|++.|. +|++.++.
T Consensus 7 ~gK~alVTGass~~GIG~aiA~~la~~Ga-------~Vvi~~~~ 43 (297)
T d1d7oa_ 7 RGKRAFIAGIADDNGYGWAVAKSLAAAGA-------EILVGTWV 43 (297)
T ss_dssp TTCEEEEECCSSSSSHHHHHHHHHHHTTC-------EEEEEEEH
T ss_pred CCCEEEEECCCCCchHHHHHHHHHHHCCC-------EEEEEeCc
Confidence 568999999877 699999999999885 88888864
|
| >d1pgja2 c.2.1.6 (A:1-178) 6-phosphogluconate dehydrogenase {Trypanosoma brucei [TaxId: 5691]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: 6-phosphogluconate dehydrogenase species: Trypanosoma brucei [TaxId: 5691]
Probab=96.51 E-value=0.0086 Score=47.18 Aligned_cols=34 Identities=24% Similarity=0.236 Sum_probs=30.5
Q ss_pred CcEEEEEcCCChhHHHHHHHHHhcccCCCCCCeEEEEEeccc
Q 019990 5 PLRVLVTGAAGQIGYALVPMIARGIMLGPDQPVILHMLDIEP 46 (332)
Q Consensus 5 ~~kI~VtGaaG~IGs~l~~~L~~~~~~~~~~~~~i~l~D~~~ 46 (332)
.|||.|+| .|.+|++++.+|+..++ +|..+|++.
T Consensus 1 ~MkIGvIG-lG~MG~~ma~~L~~~G~-------~V~~~dr~~ 34 (178)
T d1pgja2 1 SMDVGVVG-LGVMGANLALNIAEKGF-------KVAVFNRTY 34 (178)
T ss_dssp CBSEEEEC-CSHHHHHHHHHHHHTTC-------CEEEECSSH
T ss_pred CCEEEEEe-ehHHHHHHHHHHHHCCC-------eEEEEECCH
Confidence 36899999 89999999999999886 899999864
|
| >d1diha1 c.2.1.3 (A:2-130,A:241-273) Dihydrodipicolinate reductase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Dihydrodipicolinate reductase species: Escherichia coli [TaxId: 562]
Probab=96.49 E-value=0.0025 Score=49.90 Aligned_cols=74 Identities=20% Similarity=0.215 Sum_probs=44.2
Q ss_pred CCcEEEEEcCCChhHHHHHHHHHhcccCCCCCCeEE-EEEecccchhhhhhhHhhhhhhccCCccceEEeCCHHHHhCCC
Q 019990 4 NPLRVLVTGAAGQIGYALVPMIARGIMLGPDQPVIL-HMLDIEPAAEALNGVKMELIDAAFPLLKGVVATTDVVEACKDV 82 (332)
Q Consensus 4 ~~~kI~VtGaaG~IGs~l~~~L~~~~~~~~~~~~~i-~l~D~~~~~~~~~~~~~dl~~~~~~~~~~v~~~~~~~~a~~~a 82 (332)
..+||+|.||+|.+|+.++..+.+.+-+ ++ ..+|+.... .. ..|+.........++....++.+.++.+
T Consensus 3 s~ikI~i~Ga~GrMG~~i~~~i~~~~~~------~lv~~~~~~~~~-~~---g~d~~~~~~~~~~~~~~~~~~~~~~~~~ 72 (162)
T d1diha1 3 ANIRVAIAGAGGRMGRQLIQAALALEGV------QLGAALEREGSS-LL---GSDAGELAGAGKTGVTVQSSLDAVKDDF 72 (162)
T ss_dssp CBEEEEETTTTSHHHHHHHHHHHHSTTE------ECCCEECCTTCT-TC---SCCTTCSSSSSCCSCCEESCSTTTTTSC
T ss_pred CCCEEEEECCCCHHHHHHHHHHHhCCCC------EEEEEEecccch-hc---cchhhhhhccccCCceeeccHHHHhccc
Confidence 4689999999999999999988875421 32 445543211 11 1122221111123445556677778899
Q ss_pred cEEEE
Q 019990 83 NIAVM 87 (332)
Q Consensus 83 DiVi~ 87 (332)
|+||=
T Consensus 73 DViID 77 (162)
T d1diha1 73 DVFID 77 (162)
T ss_dssp SEEEE
T ss_pred ceEEE
Confidence 98874
|
| >d1pjca1 c.2.1.4 (A:136-303) L-alanine dehydrogenase {Phormidium lapideum [TaxId: 32060]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: L-alanine dehydrogenase species: Phormidium lapideum [TaxId: 32060]
Probab=96.35 E-value=0.005 Score=48.12 Aligned_cols=77 Identities=16% Similarity=0.186 Sum_probs=50.6
Q ss_pred CCcEEEEEcCCChhHHHHHHHHHhcccCCCCCCeEEEEEecccchhhhhhhHhhhhhhccCCccceEEeCCHHHHhCCCc
Q 019990 4 NPLRVLVTGAAGQIGYALVPMIARGIMLGPDQPVILHMLDIEPAAEALNGVKMELIDAAFPLLKGVVATTDVVEACKDVN 83 (332)
Q Consensus 4 ~~~kI~VtGaaG~IGs~l~~~L~~~~~~~~~~~~~i~l~D~~~~~~~~~~~~~dl~~~~~~~~~~v~~~~~~~~a~~~aD 83 (332)
++-||+|+| +|-+|.+-+...+..|- .+..+|.+. ++++.....+... ..........+.+.++++|
T Consensus 31 ~pa~V~ViG-aGvaG~~A~~~A~~lGA-------~V~~~D~~~--~~l~~l~~~~~~~---~~~~~~~~~~l~~~~~~aD 97 (168)
T d1pjca1 31 KPGKVVILG-GGVVGTEAAKMAVGLGA-------QVQIFDINV--ERLSYLETLFGSR---VELLYSNSAEIETAVAEAD 97 (168)
T ss_dssp CCCEEEEEC-CSHHHHHHHHHHHHTTC-------EEEEEESCH--HHHHHHHHHHGGG---SEEEECCHHHHHHHHHTCS
T ss_pred CCcEEEEEC-CChHHHHHHHHHhhCCC-------EEEEEeCcH--HHHHHHHHhhccc---ceeehhhhhhHHHhhccCc
Confidence 578999999 69999999888888774 899999864 2333211111110 0011111234677899999
Q ss_pred EEEEecCCCC
Q 019990 84 IAVMVGGFPR 93 (332)
Q Consensus 84 iVi~~ag~~~ 93 (332)
+||-++-+|.
T Consensus 98 ivI~aalipG 107 (168)
T d1pjca1 98 LLIGAVLVPG 107 (168)
T ss_dssp EEEECCCCTT
T ss_pred EEEEeeecCC
Confidence 9999987654
|
| >d2jfga1 c.5.1.1 (A:1-93) UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase MurD {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: MurCD N-terminal domain superfamily: MurCD N-terminal domain family: MurCD N-terminal domain domain: UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase MurD species: Escherichia coli [TaxId: 562]
Probab=96.34 E-value=0.0029 Score=44.52 Aligned_cols=72 Identities=17% Similarity=0.136 Sum_probs=47.1
Q ss_pred CCcEEEEEcCCChhHHHHHHHHHhcccCCCCCCeEEEEEecccchhhhhhhHhhhhhhccCCccceEEeCCHHHHhCCCc
Q 019990 4 NPLRVLVTGAAGQIGYALVPMIARGIMLGPDQPVILHMLDIEPAAEALNGVKMELIDAAFPLLKGVVATTDVVEACKDVN 83 (332)
Q Consensus 4 ~~~kI~VtGaaG~IGs~l~~~L~~~~~~~~~~~~~i~l~D~~~~~~~~~~~~~dl~~~~~~~~~~v~~~~~~~~a~~~aD 83 (332)
+.+||+|+| .|-.|.+++..|.+.+. ++.++|.+...+.. .++.+. ..+.......+.+.++|
T Consensus 4 ~~K~v~ViG-lG~sG~s~a~~L~~~g~-------~v~~~D~~~~~~~~----~~~~~~-----~~~~~~~~~~~~~~~~d 66 (93)
T d2jfga1 4 QGKNVVIIG-LGLTGLSCVDFFLARGV-------TPRVMDTRMTPPGL----DKLPEA-----VERHTGSLNDEWLMAAD 66 (93)
T ss_dssp TTCCEEEEC-CSHHHHHHHHHHHHTTC-------CCEEEESSSSCTTG----GGSCTT-----SCEEESBCCHHHHHHCS
T ss_pred CCCEEEEEe-ECHHHHHHHHHHHHCCC-------EEEEeeCCcCchhH----HHHhhc-----cceeecccchhhhccCC
Confidence 567899999 69999999999999885 78999975432111 112111 11221111234577899
Q ss_pred EEEEecCCC
Q 019990 84 IAVMVGGFP 92 (332)
Q Consensus 84 iVi~~ag~~ 92 (332)
.||..-|++
T Consensus 67 ~vi~SPGi~ 75 (93)
T d2jfga1 67 LIVASPGIA 75 (93)
T ss_dssp EEEECTTSC
T ss_pred EEEECCCCC
Confidence 999987765
|
| >d1c0pa1 c.4.1.2 (A:999-1193,A:1289-1361) D-aminoacid oxidase, N-terminal domain {Rhodotorula gracilis [TaxId: 5286]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-binding domain superfamily: Nucleotide-binding domain family: D-aminoacid oxidase, N-terminal domain domain: D-aminoacid oxidase, N-terminal domain species: Rhodotorula gracilis [TaxId: 5286]
Probab=96.09 E-value=0.0036 Score=51.68 Aligned_cols=37 Identities=32% Similarity=0.488 Sum_probs=32.2
Q ss_pred CCCCCcEEEEEcCCChhHHHHHHHHHhcccCCCCCCeEEEEEecc
Q 019990 1 MAKNPLRVLVTGAAGQIGYALVPMIARGIMLGPDQPVILHMLDIE 45 (332)
Q Consensus 1 m~~~~~kI~VtGaaG~IGs~l~~~L~~~~~~~~~~~~~i~l~D~~ 45 (332)
|.+..+||+|+| +|..|.+.|..|.+.|. +|.++|..
T Consensus 2 ~~~~~~kVvVIG-aGiaGl~~A~~L~~~G~-------~V~vier~ 38 (268)
T d1c0pa1 2 MMHSQKRVVVLG-SGVIGLSSALILARKGY-------SVHILARD 38 (268)
T ss_dssp CCCCSCEEEEEC-CSHHHHHHHHHHHHTTC-------EEEEEESS
T ss_pred CCCCCCcEEEEC-ccHHHHHHHHHHHHCCC-------CEEEEeCC
Confidence 445678999999 69999999999999886 89999974
|
| >d1mx3a1 c.2.1.4 (A:126-318) Transcription corepressor CtbP {Human (Homo sapiens), Ctbp1 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: Transcription corepressor CtbP species: Human (Homo sapiens), Ctbp1 [TaxId: 9606]
Probab=96.00 E-value=0.0087 Score=48.08 Aligned_cols=65 Identities=12% Similarity=0.077 Sum_probs=46.7
Q ss_pred CcEEEEEcCCChhHHHHHHHHHhcccCCCCCCeEEEEEecccchhhhhhhHhhhhhhccCCccceEEeCCHHHHhCCCcE
Q 019990 5 PLRVLVTGAAGQIGYALVPMIARGIMLGPDQPVILHMLDIEPAAEALNGVKMELIDAAFPLLKGVVATTDVVEACKDVNI 84 (332)
Q Consensus 5 ~~kI~VtGaaG~IGs~l~~~L~~~~~~~~~~~~~i~l~D~~~~~~~~~~~~~dl~~~~~~~~~~v~~~~~~~~a~~~aDi 84 (332)
.++|+|+| .|.||+.++..|..-|. ++..+|.....+ .... .++....++.+.++.||+
T Consensus 49 gktvgIiG-~G~IG~~va~~l~~fg~-------~v~~~d~~~~~~----~~~~---------~~~~~~~~l~~ll~~sD~ 107 (193)
T d1mx3a1 49 GETLGIIG-LGRVGQAVALRAKAFGF-------NVLFYDPYLSDG----VERA---------LGLQRVSTLQDLLFHSDC 107 (193)
T ss_dssp TCEEEEEC-CSHHHHHHHHHHHTTTC-------EEEEECTTSCTT----HHHH---------HTCEECSSHHHHHHHCSE
T ss_pred CceEEEec-cccccccceeeeecccc-------ceeeccCccccc----chhh---------hccccccchhhccccCCE
Confidence 57899999 79999999999987665 899999753211 1000 123334578888999999
Q ss_pred EEEecC
Q 019990 85 AVMVGG 90 (332)
Q Consensus 85 Vi~~ag 90 (332)
|++...
T Consensus 108 i~~~~p 113 (193)
T d1mx3a1 108 VTLHCG 113 (193)
T ss_dssp EEECCC
T ss_pred EEEeec
Confidence 988753
|
| >d1id1a_ c.2.1.9 (A:) Rck domain from putative potassium channel Kch {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Potassium channel NAD-binding domain domain: Rck domain from putative potassium channel Kch species: Escherichia coli [TaxId: 562]
Probab=95.98 E-value=0.015 Score=44.46 Aligned_cols=102 Identities=6% Similarity=0.021 Sum_probs=58.4
Q ss_pred CcEEEEEcCCChhHHHHHHHHHhcccCCCCCCeEEEEEecccchhhhhhhHhhhhhhcc-CCccceEEeCCHHHH-hCCC
Q 019990 5 PLRVLVTGAAGQIGYALVPMIARGIMLGPDQPVILHMLDIEPAAEALNGVKMELIDAAF-PLLKGVVATTDVVEA-CKDV 82 (332)
Q Consensus 5 ~~kI~VtGaaG~IGs~l~~~L~~~~~~~~~~~~~i~l~D~~~~~~~~~~~~~dl~~~~~-~~~~~v~~~~~~~~a-~~~a 82 (332)
+.+|.|+| .|.+|..++..|...+. +++++|.++. .......++..... ...++.+....+.++ +.+|
T Consensus 3 knHiII~G-~g~~g~~l~~~L~~~~~-------~v~vId~d~~--~~~~~~~~~~~~~~~vi~Gd~~d~~~L~~a~i~~a 72 (153)
T d1id1a_ 3 KDHFIVCG-HSILAINTILQLNQRGQ-------NVTVISNLPE--DDIKQLEQRLGDNADVIPGDSNDSSVLKKAGIDRC 72 (153)
T ss_dssp CSCEEEEC-CSHHHHHHHHHHHHTTC-------CEEEEECCCH--HHHHHHHHHHCTTCEEEESCTTSHHHHHHHTTTTC
T ss_pred CCEEEEEC-CCHHHHHHHHHHHHcCC-------CEEEEeccch--hHHHHHHHhhcCCcEEEEccCcchHHHHHhccccC
Confidence 34799999 69999999999998775 7888887542 22222222221111 112333333334444 5789
Q ss_pred cEEEEecCCCCCCCCChhHHHhhhHHHHHHHHHHHHhhcCCCcEEEEEeC
Q 019990 83 NIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEKHAAPNCKVLVVAN 132 (332)
Q Consensus 83 DiVi~~ag~~~~~~~~~~~~~~~N~~~~~~i~~~i~~~~~~~~~viv~sn 132 (332)
|.||.+.+. + ..|+. ++..+++.. |+.+++.-++
T Consensus 73 ~~vi~~~~~------d-----~~n~~----~~~~~r~~~-~~~~iia~~~ 106 (153)
T d1id1a_ 73 RAILALSDN------D-----ADNAF----VVLSAKDMS-SDVKTVLAVS 106 (153)
T ss_dssp SEEEECSSC------H-----HHHHH----HHHHHHHHT-SSSCEEEECS
T ss_pred CEEEEcccc------H-----HHHHH----HHHHHHHhC-CCCceEEEEc
Confidence 999987421 1 22432 334556664 6766666554
|
| >d1qp8a1 c.2.1.4 (A:83-263) Putative formate dehydrogenase {Archaeon Pyrobaculum aerophilum [TaxId: 13773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: Putative formate dehydrogenase species: Archaeon Pyrobaculum aerophilum [TaxId: 13773]
Probab=95.65 E-value=0.014 Score=46.34 Aligned_cols=60 Identities=23% Similarity=0.203 Sum_probs=44.6
Q ss_pred CCcEEEEEcCCChhHHHHHHHHHhcccCCCCCCeEEEEEecccchhhhhhhHhhhhhhccCCccceEEeCCHHHHhCCCc
Q 019990 4 NPLRVLVTGAAGQIGYALVPMIARGIMLGPDQPVILHMLDIEPAAEALNGVKMELIDAAFPLLKGVVATTDVVEACKDVN 83 (332)
Q Consensus 4 ~~~kI~VtGaaG~IGs~l~~~L~~~~~~~~~~~~~i~l~D~~~~~~~~~~~~~dl~~~~~~~~~~v~~~~~~~~a~~~aD 83 (332)
..++|+|+| .|.||+.++..+..-|. +|..+|....+ + ......++.+.+++||
T Consensus 41 ~gk~vgIiG-~G~IG~~va~~l~~~g~-------~v~~~d~~~~~----~--------------~~~~~~~l~ell~~sD 94 (181)
T d1qp8a1 41 QGEKVAVLG-LGEIGTRVGKILAALGA-------QVRGFSRTPKE----G--------------PWRFTNSLEEALREAR 94 (181)
T ss_dssp TTCEEEEES-CSTHHHHHHHHHHHTTC-------EEEEECSSCCC----S--------------SSCCBSCSHHHHTTCS
T ss_pred cCceEEEec-cccccccceeeeecccc-------ccccccccccc----c--------------ceeeeechhhhhhccc
Confidence 357899999 79999999999887665 89999975321 0 0011245778899999
Q ss_pred EEEEec
Q 019990 84 IAVMVG 89 (332)
Q Consensus 84 iVi~~a 89 (332)
+|++..
T Consensus 95 iv~~~~ 100 (181)
T d1qp8a1 95 AAVCAL 100 (181)
T ss_dssp EEEECC
T ss_pred hhhccc
Confidence 999864
|
| >d2naca1 c.2.1.4 (A:148-335) Formate dehydrogenase {Pseudomonas sp., strain 101 [TaxId: 306]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: Formate dehydrogenase species: Pseudomonas sp., strain 101 [TaxId: 306]
Probab=95.63 E-value=0.019 Score=45.77 Aligned_cols=66 Identities=18% Similarity=0.182 Sum_probs=46.9
Q ss_pred CCcEEEEEcCCChhHHHHHHHHHhcccCCCCCCeEEEEEecccchhhhhhhHhhhhhhccCCccceEEeCCHHHHhCCCc
Q 019990 4 NPLRVLVTGAAGQIGYALVPMIARGIMLGPDQPVILHMLDIEPAAEALNGVKMELIDAAFPLLKGVVATTDVVEACKDVN 83 (332)
Q Consensus 4 ~~~kI~VtGaaG~IGs~l~~~L~~~~~~~~~~~~~i~l~D~~~~~~~~~~~~~dl~~~~~~~~~~v~~~~~~~~a~~~aD 83 (332)
..++|+|+| .|.||+.++..|..-+. ++..+|..... .....+ ..+....++.+.++++|
T Consensus 43 ~~~~vgiiG-~G~IG~~va~~l~~fg~-------~v~~~d~~~~~---~~~~~~---------~~~~~~~~l~~~l~~sD 102 (188)
T d2naca1 43 EAMHVGTVA-AGRIGLAVLRRLAPFDV-------HLHYTDRHRLP---ESVEKE---------LNLTWHATREDMYPVCD 102 (188)
T ss_dssp TTCEEEEEC-CSHHHHHHHHHHGGGTC-------EEEEECSSCCC---HHHHHH---------HTCEECSSHHHHGGGCS
T ss_pred cccceeecc-ccccchhhhhhhhccCc-------eEEEEeecccc---cccccc---------ccccccCCHHHHHHhcc
Confidence 357999999 79999999999987664 89999974321 111111 12334567888999999
Q ss_pred EEEEec
Q 019990 84 IAVMVG 89 (332)
Q Consensus 84 iVi~~a 89 (332)
+|+...
T Consensus 103 ~v~~~~ 108 (188)
T d2naca1 103 VVTLNC 108 (188)
T ss_dssp EEEECS
T ss_pred chhhcc
Confidence 998865
|
| >d1li4a1 c.2.1.4 (A:190-352) S-adenosylhomocystein hydrolase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: S-adenosylhomocystein hydrolase species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.45 E-value=0.035 Score=42.94 Aligned_cols=68 Identities=28% Similarity=0.360 Sum_probs=49.2
Q ss_pred CCcEEEEEcCCChhHHHHHHHHHhcccCCCCCCeEEEEEecccchhhhhhhHhhhhhhccCCccceEEeCCHHHHhCCCc
Q 019990 4 NPLRVLVTGAAGQIGYALVPMIARGIMLGPDQPVILHMLDIEPAAEALNGVKMELIDAAFPLLKGVVATTDVVEACKDVN 83 (332)
Q Consensus 4 ~~~kI~VtGaaG~IGs~l~~~L~~~~~~~~~~~~~i~l~D~~~~~~~~~~~~~dl~~~~~~~~~~v~~~~~~~~a~~~aD 83 (332)
..++|.|+| -|.||+.+|..+...+. +|.++|.++. ..+++. +| .+. ...+.+++..+|
T Consensus 23 ~Gk~v~V~G-yG~iG~g~A~~~rg~G~-------~V~v~e~dp~-~al~A~-~d----------G~~-v~~~~~a~~~ad 81 (163)
T d1li4a1 23 AGKVAVVAG-YGDVGKGCAQALRGFGA-------RVIITEIDPI-NALQAA-ME----------GYE-VTTMDEACQEGN 81 (163)
T ss_dssp TTCEEEEEC-CSHHHHHHHHHHHHTTC-------EEEEECSCHH-HHHHHH-HT----------TCE-ECCHHHHTTTCS
T ss_pred cCCEEEEec-cccccHHHHHHHHhCCC-------eeEeeecccc-hhHHhh-cC----------ceE-eeehhhhhhhcc
Confidence 357899999 89999999999998775 8999998652 223221 11 122 235788899999
Q ss_pred EEEEecCCC
Q 019990 84 IAVMVGGFP 92 (332)
Q Consensus 84 iVi~~ag~~ 92 (332)
+||.+.|..
T Consensus 82 ivvtaTGn~ 90 (163)
T d1li4a1 82 IFVTTTGCI 90 (163)
T ss_dssp EEEECSSCS
T ss_pred EEEecCCCc
Confidence 998876643
|
| >d1p3da1 c.5.1.1 (A:11-106) UDP-N-acetylmuramate-alanine ligase MurC {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: MurCD N-terminal domain superfamily: MurCD N-terminal domain family: MurCD N-terminal domain domain: UDP-N-acetylmuramate-alanine ligase MurC species: Haemophilus influenzae [TaxId: 727]
Probab=95.43 E-value=0.062 Score=37.61 Aligned_cols=73 Identities=14% Similarity=0.193 Sum_probs=48.2
Q ss_pred CCCcEEEEEcCCChhH-HHHHHHHHhcccCCCCCCeEEEEEecccchhhhhhhHhhhhhhccCCccceEEeCCHHHHhCC
Q 019990 3 KNPLRVLVTGAAGQIG-YALVPMIARGIMLGPDQPVILHMLDIEPAAEALNGVKMELIDAAFPLLKGVVATTDVVEACKD 81 (332)
Q Consensus 3 ~~~~kI~VtGaaG~IG-s~l~~~L~~~~~~~~~~~~~i~l~D~~~~~~~~~~~~~dl~~~~~~~~~~v~~~~~~~~a~~~ 81 (332)
...+||-++| -|-+| ++||..|.+.|+ +|.-.|...+. ....|.+.. ..+.. ....+.+.+
T Consensus 6 ~~~~~ihfiG-igG~GMs~LA~~L~~~G~-------~VsGSD~~~~~-----~~~~L~~~G----i~v~~-g~~~~~i~~ 67 (96)
T d1p3da1 6 RRVQQIHFIG-IGGAGMSGIAEILLNEGY-------QISGSDIADGV-----VTQRLAQAG----AKIYI-GHAEEHIEG 67 (96)
T ss_dssp TTCCEEEEET-TTSTTHHHHHHHHHHHTC-------EEEEEESCCSH-----HHHHHHHTT----CEEEE-SCCGGGGTT
T ss_pred hhCCEEEEEE-ECHHHHHHHHHHHHhCCC-------EEEEEeCCCCh-----hhhHHHHCC----CeEEE-CCccccCCC
Confidence 4678999999 57777 778999999987 89999986431 122333321 12222 222345789
Q ss_pred CcEEEEecCCCC
Q 019990 82 VNIAVMVGGFPR 93 (332)
Q Consensus 82 aDiVi~~ag~~~ 93 (332)
+|.||.+.+++.
T Consensus 68 ~d~vV~S~AI~~ 79 (96)
T d1p3da1 68 ASVVVVSSAIKD 79 (96)
T ss_dssp CSEEEECTTSCT
T ss_pred CCEEEECCCcCC
Confidence 999999877763
|
| >d1j4aa1 c.2.1.4 (A:104-300) D-lactate dehydrogenase {Lactobacillus helveticus [TaxId: 1587]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: D-lactate dehydrogenase species: Lactobacillus helveticus [TaxId: 1587]
Probab=95.41 E-value=0.012 Score=47.36 Aligned_cols=62 Identities=15% Similarity=0.119 Sum_probs=44.5
Q ss_pred CcEEEEEcCCChhHHHHHHHHHhcccCCCCCCeEEEEEecccchhhhhhhHhhhhhhccCCccceEEeCCHHHHhCCCcE
Q 019990 5 PLRVLVTGAAGQIGYALVPMIARGIMLGPDQPVILHMLDIEPAAEALNGVKMELIDAAFPLLKGVVATTDVVEACKDVNI 84 (332)
Q Consensus 5 ~~kI~VtGaaG~IGs~l~~~L~~~~~~~~~~~~~i~l~D~~~~~~~~~~~~~dl~~~~~~~~~~v~~~~~~~~a~~~aDi 84 (332)
.++|+|+| .|.||+.++..|..-|. +|..+|..... . . . .+. + ...++.+.++.+|+
T Consensus 43 gk~vgIiG-~G~IG~~va~~l~~fg~-------~V~~~d~~~~~---~-~-~--~~~-------~-~~~~l~~~l~~sDi 99 (197)
T d1j4aa1 43 DQVVGVVG-TGHIGQVFMQIMEGFGA-------KVITYDIFRNP---E-L-E--KKG-------Y-YVDSLDDLYKQADV 99 (197)
T ss_dssp GSEEEEEC-CSHHHHHHHHHHHHTTC-------EEEEECSSCCH---H-H-H--HTT-------C-BCSCHHHHHHHCSE
T ss_pred CCeEEEec-ccccchhHHHhHhhhcc-------cccccCccccc---c-c-c--cce-------e-eecccccccccccc
Confidence 47899999 89999999999987664 89999975321 1 0 0 010 1 12467888999999
Q ss_pred EEEec
Q 019990 85 AVMVG 89 (332)
Q Consensus 85 Vi~~a 89 (332)
|++..
T Consensus 100 i~~~~ 104 (197)
T d1j4aa1 100 ISLHV 104 (197)
T ss_dssp EEECS
T ss_pred ccccC
Confidence 98875
|
| >d2gz1a1 c.2.1.3 (A:2-127,A:330-357) Aspartate beta-semialdehyde dehydrogenase {Streptococcus pneumoniae [TaxId: 1313]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Aspartate beta-semialdehyde dehydrogenase species: Streptococcus pneumoniae [TaxId: 1313]
Probab=95.41 E-value=0.0093 Score=46.02 Aligned_cols=70 Identities=20% Similarity=0.252 Sum_probs=40.3
Q ss_pred cEEEEEcCCChhHHHHHHHHHhcccCCCCCCeEEEEEecccchhhhhhhHhhhhhhccCCccceEEeCCHHHHhCCCcEE
Q 019990 6 LRVLVTGAAGQIGYALVPMIARGIMLGPDQPVILHMLDIEPAAEALNGVKMELIDAAFPLLKGVVATTDVVEACKDVNIA 85 (332)
Q Consensus 6 ~kI~VtGaaG~IGs~l~~~L~~~~~~~~~~~~~i~l~D~~~~~~~~~~~~~dl~~~~~~~~~~v~~~~~~~~a~~~aDiV 85 (332)
-||+|+||+|++|..|++.|....+ . ..++.++.-+. ..|.. +.. ..............+.++|++
T Consensus 2 ~kVaIvGATGyvG~eLirlL~~H~f-p---~~~l~~~~s~~----s~G~~--~~~----~~~~~~~~~~~~~~~~~~d~~ 67 (154)
T d2gz1a1 2 YTVAVVGATGAVGAQMIKMLEESTL-P---IDKIRYLASAR----SAGKS--LKF----KDQDITIEETTETAFEGVDIA 67 (154)
T ss_dssp EEEEEETTTSHHHHHHHHHHHTCCS-C---EEEEEEEECGG----GTTCE--EEE----TTEEEEEEECCTTTTTTCSEE
T ss_pred CEEEEECCCcHHHHHHHHHHHcCCC-C---ceEEEEecccc----ccccc--ccc----cCCcccccccchhhhhhhhhh
Confidence 3899999999999999988876642 0 13676665421 12211 111 011122222223456788988
Q ss_pred EEec
Q 019990 86 VMVG 89 (332)
Q Consensus 86 i~~a 89 (332)
++++
T Consensus 68 f~~~ 71 (154)
T d2gz1a1 68 LFSA 71 (154)
T ss_dssp EECS
T ss_pred hhcc
Confidence 8875
|
| >d1gdha1 c.2.1.4 (A:101-291) D-glycerate dehydrogenase {Hyphomicrobium methylovorum [TaxId: 84]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: D-glycerate dehydrogenase species: Hyphomicrobium methylovorum [TaxId: 84]
Probab=95.30 E-value=0.027 Score=44.94 Aligned_cols=65 Identities=15% Similarity=0.022 Sum_probs=45.6
Q ss_pred CcEEEEEcCCChhHHHHHHHHHhcccCCCCCCeEEEEEecccchhhhhhhHhhhhhhccCCccceEEeCCHHHHhCCCcE
Q 019990 5 PLRVLVTGAAGQIGYALVPMIARGIMLGPDQPVILHMLDIEPAAEALNGVKMELIDAAFPLLKGVVATTDVVEACKDVNI 84 (332)
Q Consensus 5 ~~kI~VtGaaG~IGs~l~~~L~~~~~~~~~~~~~i~l~D~~~~~~~~~~~~~dl~~~~~~~~~~v~~~~~~~~a~~~aDi 84 (332)
.++|+|+| .|.||+.++..+..-+. ++..+|..... .. .+... ......++.+.++.||+
T Consensus 47 g~tvgIiG-~G~IG~~va~~l~~fg~-------~v~~~d~~~~~--~~---~~~~~-------~~~~~~~l~~ll~~sD~ 106 (191)
T d1gdha1 47 NKTLGIYG-FGSIGQALAKRAQGFDM-------DIDYFDTHRAS--SS---DEASY-------QATFHDSLDSLLSVSQF 106 (191)
T ss_dssp TCEEEEEC-CSHHHHHHHHHHHTTTC-------EEEEECSSCCC--HH---HHHHH-------TCEECSSHHHHHHHCSE
T ss_pred ccceEEee-cccchHHHHHHHHhhcc-------ccccccccccc--cc---hhhcc-------cccccCCHHHHHhhCCe
Confidence 57899999 79999999998887664 88999974321 11 01111 12234578888999999
Q ss_pred EEEec
Q 019990 85 AVMVG 89 (332)
Q Consensus 85 Vi~~a 89 (332)
|+...
T Consensus 107 v~l~~ 111 (191)
T d1gdha1 107 FSLNA 111 (191)
T ss_dssp EEECC
T ss_pred EEecC
Confidence 98865
|
| >d1nvta1 c.2.1.7 (A:111-287) Shikimate 5-dehydrogenase AroE {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Shikimate 5-dehydrogenase AroE species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=95.24 E-value=0.022 Score=44.75 Aligned_cols=76 Identities=13% Similarity=0.103 Sum_probs=47.0
Q ss_pred CCcEEEEEcCCChhHHHHHHHHHhcccCCCCCCeEEEEEecccchhhhhhhHhhhhhhccCC-ccceEEeCCHHHHhCCC
Q 019990 4 NPLRVLVTGAAGQIGYALVPMIARGIMLGPDQPVILHMLDIEPAAEALNGVKMELIDAAFPL-LKGVVATTDVVEACKDV 82 (332)
Q Consensus 4 ~~~kI~VtGaaG~IGs~l~~~L~~~~~~~~~~~~~i~l~D~~~~~~~~~~~~~dl~~~~~~~-~~~v~~~~~~~~a~~~a 82 (332)
+.++|+|+| +|.++.++++.|...+ +|.++.++. ++.+....++....... ...+. ..++.....++
T Consensus 17 ~~k~vlIlG-aGG~arai~~aL~~~~--------~i~I~nR~~--~ka~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~ 84 (177)
T d1nvta1 17 KDKNIVIYG-AGGAARAVAFELAKDN--------NIIIANRTV--EKAEALAKEIAEKLNKKFGEEVK-FSGLDVDLDGV 84 (177)
T ss_dssp CSCEEEEEC-CSHHHHHHHHHHTSSS--------EEEEECSSH--HHHHHHHHHHHHHHTCCHHHHEE-EECTTCCCTTC
T ss_pred CCCEEEEEC-CcHHHHHHHHHHcccc--------ceeeehhhh--hHHHHHHHHHHHhhchhhhhhhh-hhhhhhccchh
Confidence 467899999 6999999998885433 799998853 34444444443221111 11122 23444556789
Q ss_pred cEEEEecCC
Q 019990 83 NIAVMVGGF 91 (332)
Q Consensus 83 DiVi~~ag~ 91 (332)
|++|.+-..
T Consensus 85 dliIn~tp~ 93 (177)
T d1nvta1 85 DIIINATPI 93 (177)
T ss_dssp CEEEECSCT
T ss_pred hhhccCCcc
Confidence 999997543
|
| >d1nyta1 c.2.1.7 (A:102-271) Shikimate 5-dehydrogenase AroE {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Shikimate 5-dehydrogenase AroE species: Escherichia coli [TaxId: 562]
Probab=95.23 E-value=0.05 Score=42.27 Aligned_cols=72 Identities=10% Similarity=0.072 Sum_probs=45.2
Q ss_pred CCcEEEEEcCCChhHHHHHHHHHhcccCCCCCCeEEEEEecccchhhhhhhHhhhhhhccCCccceEEeCCHHHHhCCCc
Q 019990 4 NPLRVLVTGAAGQIGYALVPMIARGIMLGPDQPVILHMLDIEPAAEALNGVKMELIDAAFPLLKGVVATTDVVEACKDVN 83 (332)
Q Consensus 4 ~~~kI~VtGaaG~IGs~l~~~L~~~~~~~~~~~~~i~l~D~~~~~~~~~~~~~dl~~~~~~~~~~v~~~~~~~~a~~~aD 83 (332)
+.++|+|+| +|-.+.++++.|...+. +|.+++++. ++.+.....+... ..+...........++|
T Consensus 17 ~~k~vlIlG-aGGaarai~~al~~~g~-------~i~I~nRt~--~ka~~l~~~~~~~-----~~~~~~~~~~~~~~~~d 81 (170)
T d1nyta1 17 PGLRILLIG-AGGASRGVLLPLLSLDC-------AVTITNRTV--SRAEELAKLFAHT-----GSIQALSMDELEGHEFD 81 (170)
T ss_dssp TTCEEEEEC-CSHHHHHHHHHHHHTTC-------EEEEECSSH--HHHHHHHHHTGGG-----SSEEECCSGGGTTCCCS
T ss_pred CCCEEEEEC-CcHHHHHHHHHhcccce-------EEEeccchH--HHHHHHHHHHhhc-----ccccccccccccccccc
Confidence 467999999 69999999999988764 799998753 2333222222211 12322222122346789
Q ss_pred EEEEecC
Q 019990 84 IAVMVGG 90 (332)
Q Consensus 84 iVi~~ag 90 (332)
+||.+..
T Consensus 82 liIN~Tp 88 (170)
T d1nyta1 82 LIINATS 88 (170)
T ss_dssp EEEECCS
T ss_pred eeecccc
Confidence 9999753
|
| >d1pjqa1 c.2.1.11 (A:1-113) Siroheme synthase CysG, domain 1 {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Siroheme synthase N-terminal domain-like domain: Siroheme synthase CysG, domain 1 species: Salmonella typhimurium [TaxId: 90371]
Probab=95.11 E-value=0.051 Score=39.14 Aligned_cols=35 Identities=11% Similarity=0.143 Sum_probs=29.9
Q ss_pred CCcEEEEEcCCChhHHHHHHHHHhcccCCCCCCeEEEEEeccc
Q 019990 4 NPLRVLVTGAAGQIGYALVPMIARGIMLGPDQPVILHMLDIEP 46 (332)
Q Consensus 4 ~~~kI~VtGaaG~IGs~l~~~L~~~~~~~~~~~~~i~l~D~~~ 46 (332)
+.+||+|+| +|.+|..-+..|+..|- .+.+++...
T Consensus 11 ~~k~vlVvG-~G~va~~ka~~ll~~ga-------~v~v~~~~~ 45 (113)
T d1pjqa1 11 RDRDCLIVG-GGDVAERKARLLLEAGA-------RLTVNALTF 45 (113)
T ss_dssp BTCEEEEEC-CSHHHHHHHHHHHHTTB-------EEEEEESSC
T ss_pred CCCEEEEEC-CCHHHHHHHHHHHHCCC-------eEEEEeccC
Confidence 568999999 69999999999998774 788888654
|
| >d1f06a1 c.2.1.3 (A:1-118,A:269-320) Diaminopimelic acid dehydrogenase (DAPDH) {Corynebacterium glutamicum [TaxId: 1718]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Diaminopimelic acid dehydrogenase (DAPDH) species: Corynebacterium glutamicum [TaxId: 1718]
Probab=95.05 E-value=0.025 Score=44.12 Aligned_cols=63 Identities=21% Similarity=0.292 Sum_probs=39.7
Q ss_pred CcEEEEEcCCChhHHHHHHHHHhcccCCCCCCeEE-EEEecccchhhhhhhHhhhhhhccCCccceEEeCCHHHHhCCCc
Q 019990 5 PLRVLVTGAAGQIGYALVPMIARGIMLGPDQPVIL-HMLDIEPAAEALNGVKMELIDAAFPLLKGVVATTDVVEACKDVN 83 (332)
Q Consensus 5 ~~kI~VtGaaG~IGs~l~~~L~~~~~~~~~~~~~i-~l~D~~~~~~~~~~~~~dl~~~~~~~~~~v~~~~~~~~a~~~aD 83 (332)
++||+|+| +|++|+.++..|.+..- .++ .++|.+.. ... ...+....+..+...+.|
T Consensus 3 kirvgiiG-~G~ig~~~~~~l~~~~~------~elvav~~~~~~--~~~-------------~~~~~~~~~~~~~~~~~D 60 (170)
T d1f06a1 3 NIRVAIVG-YGNLGRSVEKLIAKQPD------MDLVGIFSRRAT--LDT-------------KTPVFDVADVDKHADDVD 60 (170)
T ss_dssp CEEEEEEC-CSHHHHHHHHHHTTCSS------EEEEEEEESSSC--CSS-------------SSCEEEGGGGGGTTTTCS
T ss_pred cceEEEEC-ChHHHHHHHHHHHhCCC------cEEEEEEecccc--ccc-------------ccccccchhhhhhccccc
Confidence 67999999 79999999988876432 244 45565421 110 012233344555567899
Q ss_pred EEEEec
Q 019990 84 IAVMVG 89 (332)
Q Consensus 84 iVi~~a 89 (332)
+|+++.
T Consensus 61 ~Vvi~t 66 (170)
T d1f06a1 61 VLFLCM 66 (170)
T ss_dssp EEEECS
T ss_pred eEEEeC
Confidence 999874
|
| >d1sc6a1 c.2.1.4 (A:108-295) Phosphoglycerate dehydrogenase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: Phosphoglycerate dehydrogenase species: Escherichia coli [TaxId: 562]
Probab=94.98 E-value=0.034 Score=44.13 Aligned_cols=64 Identities=14% Similarity=0.083 Sum_probs=46.1
Q ss_pred CCcEEEEEcCCChhHHHHHHHHHhcccCCCCCCeEEEEEecccchhhhhhhHhhhhhhccCCccceEEeCCHHHHhCCCc
Q 019990 4 NPLRVLVTGAAGQIGYALVPMIARGIMLGPDQPVILHMLDIEPAAEALNGVKMELIDAAFPLLKGVVATTDVVEACKDVN 83 (332)
Q Consensus 4 ~~~kI~VtGaaG~IGs~l~~~L~~~~~~~~~~~~~i~l~D~~~~~~~~~~~~~dl~~~~~~~~~~v~~~~~~~~a~~~aD 83 (332)
..++|+|+| .|.||+.++..+..-+. ++..+|...... . .......++.+.++.+|
T Consensus 43 ~~~~vgiiG-~G~IG~~va~~l~~fg~-------~v~~~d~~~~~~--~--------------~~~~~~~~l~ell~~sD 98 (188)
T d1sc6a1 43 RGKKLGIIG-YGHIGTQLGILAESLGM-------YVYFYDIENKLP--L--------------GNATQVQHLSDLLNMSD 98 (188)
T ss_dssp TTCEEEEEC-CSHHHHHHHHHHHHTTC-------EEEEECSSCCCC--C--------------TTCEECSCHHHHHHHCS
T ss_pred cceEEEEee-cccchhhhhhhcccccc-------eEeeccccccch--h--------------hhhhhhhhHHHHHhhcc
Confidence 357999999 89999999998877665 899999743110 0 01122356888899999
Q ss_pred EEEEecCC
Q 019990 84 IAVMVGGF 91 (332)
Q Consensus 84 iVi~~ag~ 91 (332)
+|++....
T Consensus 99 ii~i~~pl 106 (188)
T d1sc6a1 99 VVSLHVPE 106 (188)
T ss_dssp EEEECCCS
T ss_pred ceeecccC
Confidence 99987643
|
| >d1x7da_ c.2.1.13 (A:) Ornithine cyclodeaminase {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Ornithine cyclodeaminase-like domain: Ornithine cyclodeaminase species: Pseudomonas putida [TaxId: 303]
Probab=94.92 E-value=0.054 Score=47.13 Aligned_cols=74 Identities=19% Similarity=0.138 Sum_probs=51.0
Q ss_pred CCcEEEEEcCCChhHHHHHHHHHh-cccCCCCCCeEEEEEecccchhhhhhhHhhhhhhccCCccceEEeCCHHHHhCCC
Q 019990 4 NPLRVLVTGAAGQIGYALVPMIAR-GIMLGPDQPVILHMLDIEPAAEALNGVKMELIDAAFPLLKGVVATTDVVEACKDV 82 (332)
Q Consensus 4 ~~~kI~VtGaaG~IGs~l~~~L~~-~~~~~~~~~~~i~l~D~~~~~~~~~~~~~dl~~~~~~~~~~v~~~~~~~~a~~~a 82 (332)
+..+++|+| +|..+...+..+.. .++ .+|+++|++. +.......++... ....+....+..+++++|
T Consensus 127 da~~l~iiG-~G~QA~~~~~a~~~v~~i------~~V~v~~r~~--~~~~~~~~~l~~~---~g~~v~~~~s~~eav~~A 194 (340)
T d1x7da_ 127 NARKMALIG-NGAQSEFQALAFHKHLGI------EEIVAYDTDP--LATAKLIANLKEY---SGLTIRRASSVAEAVKGV 194 (340)
T ss_dssp TCCEEEEEC-CSTTHHHHHHHHHHHSCC------CEEEEECSSH--HHHHHHHHHHTTC---TTCEEEECSSHHHHHTTC
T ss_pred CCceEEEEc-ccHHHHHHHHHHhhhcce------eeeEEEecCh--HHHHHHHHhhhhc---cCCCceecCCHHHHHhcC
Confidence 467899999 79999888877654 332 3899999864 2333344444321 123566677899999999
Q ss_pred cEEEEec
Q 019990 83 NIAVMVG 89 (332)
Q Consensus 83 DiVi~~a 89 (332)
|+|+.+-
T Consensus 195 DIi~t~T 201 (340)
T d1x7da_ 195 DIITTVT 201 (340)
T ss_dssp SEEEECC
T ss_pred Cceeecc
Confidence 9998753
|
| >d1dxya1 c.2.1.4 (A:101-299) D-2-hydroxyisocaproate dehydrogenase {Lactobacillus casei [TaxId: 1582]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: D-2-hydroxyisocaproate dehydrogenase species: Lactobacillus casei [TaxId: 1582]
Probab=94.85 E-value=0.021 Score=45.95 Aligned_cols=61 Identities=16% Similarity=0.110 Sum_probs=44.3
Q ss_pred CcEEEEEcCCChhHHHHHHHHHhcccCCCCCCeEEEEEecccchhhhhhhHhhhhhhccCCccceEEeCCHHHHhCCCcE
Q 019990 5 PLRVLVTGAAGQIGYALVPMIARGIMLGPDQPVILHMLDIEPAAEALNGVKMELIDAAFPLLKGVVATTDVVEACKDVNI 84 (332)
Q Consensus 5 ~~kI~VtGaaG~IGs~l~~~L~~~~~~~~~~~~~i~l~D~~~~~~~~~~~~~dl~~~~~~~~~~v~~~~~~~~a~~~aDi 84 (332)
.++|+|+| .|.||+.++..|..-|. +|..+|..... +. ...+. ..++.+.++.||+
T Consensus 45 ~ktvgIiG-~G~IG~~va~~l~~fg~-------~v~~~d~~~~~----~~-----------~~~~~-~~~l~~l~~~~D~ 100 (199)
T d1dxya1 45 QQTVGVMG-TGHIGQVAIKLFKGFGA-------KVIAYDPYPMK----GD-----------HPDFD-YVSLEDLFKQSDV 100 (199)
T ss_dssp GSEEEEEC-CSHHHHHHHHHHHHTTC-------EEEEECSSCCS----SC-----------CTTCE-ECCHHHHHHHCSE
T ss_pred ceeeeeee-cccccccccccccccce-------eeeccCCccch----hh-----------hcchh-HHHHHHHHHhccc
Confidence 47899999 79999999999987665 89999975321 00 00111 2467788899999
Q ss_pred EEEec
Q 019990 85 AVMVG 89 (332)
Q Consensus 85 Vi~~a 89 (332)
|++..
T Consensus 101 v~~~~ 105 (199)
T d1dxya1 101 IDLHV 105 (199)
T ss_dssp EEECC
T ss_pred ceeee
Confidence 99864
|
| >d1ebda2 c.3.1.5 (A:155-271) Dihydrolipoamide dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Dihydrolipoamide dehydrogenase species: Bacillus stearothermophilus [TaxId: 1422]
Probab=94.85 E-value=0.024 Score=41.17 Aligned_cols=36 Identities=25% Similarity=0.251 Sum_probs=30.8
Q ss_pred CCCcEEEEEcCCChhHHHHHHHHHhcccCCCCCCeEEEEEeccc
Q 019990 3 KNPLRVLVTGAAGQIGYALVPMIARGIMLGPDQPVILHMLDIEP 46 (332)
Q Consensus 3 ~~~~kI~VtGaaG~IGs~l~~~L~~~~~~~~~~~~~i~l~D~~~ 46 (332)
..|++|+|+| +|++|.-+|..|.+.|. ++++++..+
T Consensus 20 ~~p~~v~IiG-gG~ig~E~A~~l~~~G~-------~Vtlve~~~ 55 (117)
T d1ebda2 20 EVPKSLVVIG-GGYIGIELGTAYANFGT-------KVTILEGAG 55 (117)
T ss_dssp SCCSEEEEEC-CSHHHHHHHHHHHHTTC-------EEEEEESSS
T ss_pred hcCCeEEEEC-CCccceeeeeeeccccc-------EEEEEEecc
Confidence 3478999999 69999999999998875 899998653
|
| >d1vi2a1 c.2.1.7 (A:107-288) Putative shikimate dehydrogenase YdiB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Putative shikimate dehydrogenase YdiB species: Escherichia coli [TaxId: 562]
Probab=94.74 E-value=0.034 Score=43.85 Aligned_cols=80 Identities=11% Similarity=0.027 Sum_probs=48.1
Q ss_pred CCcEEEEEcCCChhHHHHHHHHHhcccCCCCCCeEEEEEecccch-hhhhhhHhhhhhhccCCccceEEe---CCHHHHh
Q 019990 4 NPLRVLVTGAAGQIGYALVPMIARGIMLGPDQPVILHMLDIEPAA-EALNGVKMELIDAAFPLLKGVVAT---TDVVEAC 79 (332)
Q Consensus 4 ~~~kI~VtGaaG~IGs~l~~~L~~~~~~~~~~~~~i~l~D~~~~~-~~~~~~~~dl~~~~~~~~~~v~~~---~~~~~a~ 79 (332)
+.++|+|+| +|..|.+++..|...+. .++++++++... +++......+... +.....+... .++.+.+
T Consensus 17 ~~k~vlIlG-aGGaarai~~al~~~g~------~~i~i~nR~~~~~~~~~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~ 88 (182)
T d1vi2a1 17 KGKTMVLLG-AGGASTAIGAQGAIEGL------KEIKLFNRRDEFFDKALAFAQRVNEN-TDCVVTVTDLADQQAFAEAL 88 (182)
T ss_dssp TTCEEEEEC-CSHHHHHHHHHHHHTTC------SEEEEEECSSTTHHHHHHHHHHHHHH-SSCEEEEEETTCHHHHHHHH
T ss_pred CCCEEEEEC-CcHHHHHHHHHHhhcCC------ceEeeeccchHHHHHHHHHHHHHHhh-cCcceEeeecccccchhhhh
Confidence 357999999 69999999999988775 389999986421 1222222222211 1111111211 2344567
Q ss_pred CCCcEEEEecCC
Q 019990 80 KDVNIAVMVGGF 91 (332)
Q Consensus 80 ~~aDiVi~~ag~ 91 (332)
.++|+||.+...
T Consensus 89 ~~~diiIN~Tp~ 100 (182)
T d1vi2a1 89 ASADILTNGTKV 100 (182)
T ss_dssp HTCSEEEECSST
T ss_pred cccceeccccCC
Confidence 899999998643
|
| >d1v59a2 c.3.1.5 (A:161-282) Dihydrolipoamide dehydrogenase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Dihydrolipoamide dehydrogenase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=94.70 E-value=0.026 Score=41.43 Aligned_cols=36 Identities=22% Similarity=0.428 Sum_probs=30.9
Q ss_pred CCCcEEEEEcCCChhHHHHHHHHHhcccCCCCCCeEEEEEeccc
Q 019990 3 KNPLRVLVTGAAGQIGYALVPMIARGIMLGPDQPVILHMLDIEP 46 (332)
Q Consensus 3 ~~~~kI~VtGaaG~IGs~l~~~L~~~~~~~~~~~~~i~l~D~~~ 46 (332)
..|+|++|+| +|+||.-+|..|...|. ++.+++..+
T Consensus 21 ~~p~~~vIiG-~G~ig~E~A~~l~~lG~-------~Vtii~~~~ 56 (122)
T d1v59a2 21 EIPKRLTIIG-GGIIGLEMGSVYSRLGS-------KVTVVEFQP 56 (122)
T ss_dssp SCCSEEEEEC-CSHHHHHHHHHHHHTTC-------EEEEECSSS
T ss_pred cCCCeEEEEC-CCchHHHHHHHHHhhCc-------ceeEEEecc
Confidence 4578999999 69999999999998775 899998753
|
| >d1p77a1 c.2.1.7 (A:102-272) Shikimate 5-dehydrogenase AroE {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Shikimate 5-dehydrogenase AroE species: Haemophilus influenzae [TaxId: 727]
Probab=94.69 E-value=0.054 Score=42.23 Aligned_cols=73 Identities=8% Similarity=0.028 Sum_probs=46.6
Q ss_pred CCcEEEEEcCCChhHHHHHHHHHhcccCCCCCCeEEEEEecccchhhhhhhHhhhhhhccCCccceEEeCCHHHHhCCCc
Q 019990 4 NPLRVLVTGAAGQIGYALVPMIARGIMLGPDQPVILHMLDIEPAAEALNGVKMELIDAAFPLLKGVVATTDVVEACKDVN 83 (332)
Q Consensus 4 ~~~kI~VtGaaG~IGs~l~~~L~~~~~~~~~~~~~i~l~D~~~~~~~~~~~~~dl~~~~~~~~~~v~~~~~~~~a~~~aD 83 (332)
+.++|+|+| +|..+.++++.|.+.+- +|.++.++. ++++.....+... .++.........+.++|
T Consensus 17 ~~k~vlIlG-aGGaarai~~aL~~~~~-------~i~I~nR~~--~~a~~l~~~~~~~-----~~~~~~~~~~~~~~~~d 81 (171)
T d1p77a1 17 PNQHVLILG-AGGATKGVLLPLLQAQQ-------NIVLANRTF--SKTKELAERFQPY-----GNIQAVSMDSIPLQTYD 81 (171)
T ss_dssp TTCEEEEEC-CSHHHHTTHHHHHHTTC-------EEEEEESSH--HHHHHHHHHHGGG-----SCEEEEEGGGCCCSCCS
T ss_pred CCCEEEEEC-CcHHHHHHHHHHcccCc-------eeeeccchH--HHHHHHHHHHhhc-----cccchhhhccccccccc
Confidence 457899999 69999999999986442 899998863 3444333333321 12222222223467899
Q ss_pred EEEEecCC
Q 019990 84 IAVMVGGF 91 (332)
Q Consensus 84 iVi~~ag~ 91 (332)
+||.+...
T Consensus 82 iiIN~tp~ 89 (171)
T d1p77a1 82 LVINATSA 89 (171)
T ss_dssp EEEECCCC
T ss_pred eeeecccc
Confidence 99998543
|
| >d1a4ia1 c.2.1.7 (A:127-296) Methylenetetrahydrofolate dehydrogenase/cyclohydrolase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Methylenetetrahydrofolate dehydrogenase/cyclohydrolase species: Human (Homo sapiens) [TaxId: 9606]
Probab=94.69 E-value=0.064 Score=41.77 Aligned_cols=35 Identities=9% Similarity=0.117 Sum_probs=29.6
Q ss_pred CCcEEEEEcCCChhHHHHHHHHHhcccCCCCCCeEEEEEecc
Q 019990 4 NPLRVLVTGAAGQIGYALVPMIARGIMLGPDQPVILHMLDIE 45 (332)
Q Consensus 4 ~~~kI~VtGaaG~IGs~l~~~L~~~~~~~~~~~~~i~l~D~~ 45 (332)
..++|+|+|.+.-+|..++..|.+.+- .+..++..
T Consensus 38 ~Gk~vvVIGrS~iVGrPLa~lL~~~ga-------tVt~~~~~ 72 (170)
T d1a4ia1 38 AGRHAVVVGRSKIVGAPMHDLLLWNNA-------TVTTCHSK 72 (170)
T ss_dssp TTCEEEEECCCTTTHHHHHHHHHHTTC-------EEEEECTT
T ss_pred ccceEEEEecCCccchHHHHHHHhccC-------ceEEEecc
Confidence 457899999888999999999998774 78888864
|
| >d1ygya1 c.2.1.4 (A:99-282) Phosphoglycerate dehydrogenase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: Phosphoglycerate dehydrogenase species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=94.66 E-value=0.036 Score=43.86 Aligned_cols=94 Identities=17% Similarity=0.103 Sum_probs=57.7
Q ss_pred CCcEEEEEcCCChhHHHHHHHHHhcccCCCCCCeEEEEEecccchhhhhhhHhhhhhhccCCccceEEeCCHHHHhCCCc
Q 019990 4 NPLRVLVTGAAGQIGYALVPMIARGIMLGPDQPVILHMLDIEPAAEALNGVKMELIDAAFPLLKGVVATTDVVEACKDVN 83 (332)
Q Consensus 4 ~~~kI~VtGaaG~IGs~l~~~L~~~~~~~~~~~~~i~l~D~~~~~~~~~~~~~dl~~~~~~~~~~v~~~~~~~~a~~~aD 83 (332)
..++++|+| .|.||+.++..+..-+. +|..+|.....+ ...+. .+. ..++.+.++.||
T Consensus 43 ~~k~vgiiG-~G~IG~~va~~~~~fg~-------~v~~~d~~~~~~----~~~~~---------~~~-~~~l~ell~~sD 100 (184)
T d1ygya1 43 FGKTVGVVG-LGRIGQLVAQRIAAFGA-------YVVAYDPYVSPA----RAAQL---------GIE-LLSLDDLLARAD 100 (184)
T ss_dssp TTCEEEEEC-CSHHHHHHHHHHHTTTC-------EEEEECTTSCHH----HHHHH---------TCE-ECCHHHHHHHCS
T ss_pred cceeeeecc-ccchhHHHHHHhhhccc-------eEEeecCCCChh----HHhhc---------Cce-eccHHHHHhhCC
Confidence 357899999 79999999998876554 899999753211 11111 112 246788899999
Q ss_pred EEEEecCCCCCCCCChhHHHhhhHHHHHHHHHHHHhhcCCCcEEEEEeCC
Q 019990 84 IAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEKHAAPNCKVLVVANP 133 (332)
Q Consensus 84 iVi~~ag~~~~~~~~~~~~~~~N~~~~~~i~~~i~~~~~~~~~viv~snp 133 (332)
+|++..-.. + .++ .++ |. +.+... ++++.+|+++.-
T Consensus 101 iv~~~~Plt--~-~T~-~li--n~-------~~l~~m-k~~a~lIN~sRG 136 (184)
T d1ygya1 101 FISVHLPKT--P-ETA-GLI--DK-------EALAKT-KPGVIIVNAARG 136 (184)
T ss_dssp EEEECCCCS--T-TTT-TCB--CH-------HHHTTS-CTTEEEEECSCT
T ss_pred EEEEcCCCC--c-hhh-hhh--hH-------HHHhhh-CCCceEEEecch
Confidence 998865321 1 111 122 11 222333 367788998864
|
| >d1onfa2 c.3.1.5 (A:154-270) Glutathione reductase {Plasmodium falciparum [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Glutathione reductase species: Plasmodium falciparum [TaxId: 5833]
Probab=94.64 E-value=0.025 Score=41.31 Aligned_cols=34 Identities=18% Similarity=0.220 Sum_probs=29.8
Q ss_pred CCcEEEEEcCCChhHHHHHHHHHhcccCCCCCCeEEEEEecc
Q 019990 4 NPLRVLVTGAAGQIGYALVPMIARGIMLGPDQPVILHMLDIE 45 (332)
Q Consensus 4 ~~~kI~VtGaaG~IGs~l~~~L~~~~~~~~~~~~~i~l~D~~ 45 (332)
+++||+|+| +|++|.-+|..|...|. ++++++..
T Consensus 21 ~p~~v~IiG-gG~iG~E~A~~l~~~g~-------~Vtlv~~~ 54 (117)
T d1onfa2 21 ESKKIGIVG-SGYIAVELINVIKRLGI-------DSYIFARG 54 (117)
T ss_dssp CCSEEEEEC-CSHHHHHHHHHHHTTTC-------EEEEECSS
T ss_pred CCCEEEEEC-CchHHHHHHHHHHhccc-------cceeeehh
Confidence 478999999 69999999999988774 89999974
|
| >d1gesa2 c.3.1.5 (A:147-262) Glutathione reductase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Glutathione reductase species: Escherichia coli [TaxId: 562]
Probab=94.61 E-value=0.029 Score=40.74 Aligned_cols=36 Identities=33% Similarity=0.343 Sum_probs=30.8
Q ss_pred CCCcEEEEEcCCChhHHHHHHHHHhcccCCCCCCeEEEEEeccc
Q 019990 3 KNPLRVLVTGAAGQIGYALVPMIARGIMLGPDQPVILHMLDIEP 46 (332)
Q Consensus 3 ~~~~kI~VtGaaG~IGs~l~~~L~~~~~~~~~~~~~i~l~D~~~ 46 (332)
.-|+||+|+| +|++|.-+|..|.+.|. ++.+++..+
T Consensus 19 ~~p~~vvIiG-gG~ig~E~A~~l~~~G~-------~Vtlve~~~ 54 (116)
T d1gesa2 19 ALPERVAVVG-AGYIGVELGGVINGLGA-------KTHLFEMFD 54 (116)
T ss_dssp SCCSEEEEEC-CSHHHHHHHHHHHHTTC-------EEEEECSSS
T ss_pred hCCCEEEEEC-CChhhHHHHHHhhcccc-------EEEEEeecc
Confidence 3478999999 69999999999988775 899998754
|
| >d1uh5a_ c.2.1.2 (A:) Enoyl-ACP reductase {Malaria parasite (Plasmodium falciparum) [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Enoyl-ACP reductase species: Malaria parasite (Plasmodium falciparum) [TaxId: 5833]
Probab=94.57 E-value=0.18 Score=43.26 Aligned_cols=33 Identities=6% Similarity=0.101 Sum_probs=26.3
Q ss_pred cEEEEEcCC--ChhHHHHHHHHHhcccCCCCCCeEEEEEecc
Q 019990 6 LRVLVTGAA--GQIGYALVPMIARGIMLGPDQPVILHMLDIE 45 (332)
Q Consensus 6 ~kI~VtGaa--G~IGs~l~~~L~~~~~~~~~~~~~i~l~D~~ 45 (332)
+-.+||||+ .-||..++..|++.|. +|.+.+..
T Consensus 3 kVAlITGaa~s~GIG~aiA~~la~~GA-------~V~i~~~~ 37 (329)
T d1uh5a_ 3 DICFIAGIGDTNGYGWGIAKELSKRNV-------KIIFGIWP 37 (329)
T ss_dssp CEEEEECCSSSSSHHHHHHHHHHHTTC-------EEEEEECG
T ss_pred cEEEEeCCCCCChHHHHHHHHHHHcCC-------EEEEEeCc
Confidence 346789954 3799999999999885 88888764
|
| >d1ydwa1 c.2.1.3 (A:6-133,A:305-360) Probable oxidoreductase At4g09670 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Probable oxidoreductase At4g09670 species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=94.57 E-value=0.071 Score=41.79 Aligned_cols=70 Identities=9% Similarity=0.036 Sum_probs=42.4
Q ss_pred CcEEEEEcCCChhHHHHHHHHHhcccCCCCCCeEEE-EEecccchhhhhhhHhhhhhhccCCccceEEeCCHHHHh--CC
Q 019990 5 PLRVLVTGAAGQIGYALVPMIARGIMLGPDQPVILH-MLDIEPAAEALNGVKMELIDAAFPLLKGVVATTDVVEAC--KD 81 (332)
Q Consensus 5 ~~kI~VtGaaG~IGs~l~~~L~~~~~~~~~~~~~i~-l~D~~~~~~~~~~~~~dl~~~~~~~~~~v~~~~~~~~a~--~~ 81 (332)
.+||+|+| +|.+|+..+..|...+. .+++ ++|.+. +++....... .........+++.+.+ .+
T Consensus 1 kiki~iIG-~G~~g~~~~~~l~~~~~------~~i~ai~d~~~--~~~~~~~~~~-----~~~~~~~~~~~~~~ll~~~~ 66 (184)
T d1ydwa1 1 QIRIGVMG-CADIARKVSRAIHLAPN------ATISGVASRSL--EKAKAFATAN-----NYPESTKIHGSYESLLEDPE 66 (184)
T ss_dssp CEEEEEES-CCTTHHHHHHHHHHCTT------EEEEEEECSSH--HHHHHHHHHT-----TCCTTCEEESSHHHHHHCTT
T ss_pred CeEEEEEc-CCHHHHHHHHHHHhCCC------CEEEEEEeCCc--cccccchhcc-----ccccceeecCcHHHhhhccc
Confidence 36899999 79999999988876432 2555 567653 2332221111 1112344456776665 46
Q ss_pred CcEEEEe
Q 019990 82 VNIAVMV 88 (332)
Q Consensus 82 aDiVi~~ 88 (332)
.|+|+++
T Consensus 67 iD~v~I~ 73 (184)
T d1ydwa1 67 IDALYVP 73 (184)
T ss_dssp CCEEEEC
T ss_pred cceeeec
Confidence 7899875
|
| >d2iida1 c.3.1.2 (A:4-319,A:433-486) L-aminoacid oxidase {Malayan pit viper (Calloselasma rhodostoma) [TaxId: 8717]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: L-aminoacid oxidase species: Malayan pit viper (Calloselasma rhodostoma) [TaxId: 8717]
Probab=94.55 E-value=0.018 Score=48.88 Aligned_cols=34 Identities=26% Similarity=0.426 Sum_probs=30.6
Q ss_pred CCcEEEEEcCCChhHHHHHHHHHhcccCCCCCCeEEEEEecc
Q 019990 4 NPLRVLVTGAAGQIGYALVPMIARGIMLGPDQPVILHMLDIE 45 (332)
Q Consensus 4 ~~~kI~VtGaaG~IGs~l~~~L~~~~~~~~~~~~~i~l~D~~ 45 (332)
+++||+||| +|..|.+.|..|.+.|+ +|.++|..
T Consensus 29 ~pkkV~IIG-aG~aGLsaA~~L~~~G~-------~V~vlE~~ 62 (370)
T d2iida1 29 NPKHVVIVG-AGMAGLSAAYVLAGAGH-------QVTVLEAS 62 (370)
T ss_dssp SCCEEEEEC-CBHHHHHHHHHHHHHTC-------EEEEECSS
T ss_pred CCCeEEEEC-CCHHHHHHHHHHHHCCC-------CEEEEeCC
Confidence 578999999 69999999999999886 89999964
|
| >d1b0aa1 c.2.1.7 (A:123-288) Methylenetetrahydrofolate dehydrogenase/cyclohydrolase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Methylenetetrahydrofolate dehydrogenase/cyclohydrolase species: Escherichia coli [TaxId: 562]
Probab=94.50 E-value=0.047 Score=42.35 Aligned_cols=56 Identities=13% Similarity=0.161 Sum_probs=41.8
Q ss_pred CCcEEEEEcCCChhHHHHHHHHHhcccCCCCCCeEEEEEecccchhhhhhhHhhhhhhccCCccceEEeCCHHHHhCCCc
Q 019990 4 NPLRVLVTGAAGQIGYALVPMIARGIMLGPDQPVILHMLDIEPAAEALNGVKMELIDAAFPLLKGVVATTDVVEACKDVN 83 (332)
Q Consensus 4 ~~~kI~VtGaaG~IGs~l~~~L~~~~~~~~~~~~~i~l~D~~~~~~~~~~~~~dl~~~~~~~~~~v~~~~~~~~a~~~aD 83 (332)
..++|+|+|.+.-+|..++..|.+.+. .+..++... .++.+.+++||
T Consensus 36 ~GK~v~VIGrS~~VG~Pla~lL~~~ga-------tVt~~h~~t--------------------------~~l~~~~~~AD 82 (166)
T d1b0aa1 36 FGLNAVVIGASNIVGRPMSMELLLAGC-------TTTVTHRFT--------------------------KNLRHHVENAD 82 (166)
T ss_dssp TTCEEEEECCCTTTHHHHHHHHHTTTC-------EEEEECSSC--------------------------SCHHHHHHHCS
T ss_pred ccceEEEEeccccccHHHHHHHHHhhc-------ccccccccc--------------------------chhHHHHhhhh
Confidence 457899999888899999999988764 777777532 23445567778
Q ss_pred EEEEecCCC
Q 019990 84 IAVMVGGFP 92 (332)
Q Consensus 84 iVi~~ag~~ 92 (332)
+||..+|.+
T Consensus 83 ivI~a~G~p 91 (166)
T d1b0aa1 83 LLIVAVGKP 91 (166)
T ss_dssp EEEECSCCT
T ss_pred HhhhhccCc
Confidence 888877754
|
| >d2i76a2 c.2.1.6 (A:2-154) Hypothetical protein TM1727 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Hypothetical protein TM1727 species: Thermotoga maritima [TaxId: 2336]
Probab=94.45 E-value=0.0038 Score=47.99 Aligned_cols=62 Identities=8% Similarity=0.052 Sum_probs=33.4
Q ss_pred EEEEcCCChhHHHHHHHHHhcccCCCCCCeEEEEEecccchhhhhhhHhhhhhhccCCccceEEeCCHHHHhCCCcEEEE
Q 019990 8 VLVTGAAGQIGYALVPMIARGIMLGPDQPVILHMLDIEPAAEALNGVKMELIDAAFPLLKGVVATTDVVEACKDVNIAVM 87 (332)
Q Consensus 8 I~VtGaaG~IGs~l~~~L~~~~~~~~~~~~~i~l~D~~~~~~~~~~~~~dl~~~~~~~~~~v~~~~~~~~a~~~aDiVi~ 87 (332)
|.++| +|.+|++++..|.+.+. ...+++++. ++++ ++.+.. .. ...+..++++.+|+||+
T Consensus 2 IgfIG-~G~mg~~l~~~L~~~~~-------~~~v~~R~~--~~~~----~l~~~~---~~---~~~~~~~~~~~~DiVil 61 (153)
T d2i76a2 2 LNFVG-TGTLTRFFLECLKDRYE-------IGYILSRSI--DRAR----NLAEVY---GG---KAATLEKHPELNGVVFV 61 (153)
T ss_dssp CEEES-CCHHHHHHHHTTC-----------CCCEECSSH--HHHH----HHHHHT---CC---CCCSSCCCCC---CEEE
T ss_pred EEEEe-CcHHHHHHHHHHHhCCC-------EEEEEeCCh--hhhc----chhhcc---cc---cccchhhhhccCcEEEE
Confidence 67999 79999999988755432 234677642 2333 232211 00 01234567889999998
Q ss_pred ec
Q 019990 88 VG 89 (332)
Q Consensus 88 ~a 89 (332)
+.
T Consensus 62 ~v 63 (153)
T d2i76a2 62 IV 63 (153)
T ss_dssp CS
T ss_pred ec
Confidence 74
|
| >d2cvza2 c.2.1.6 (A:2-157) Hydroxyisobutyrate dehydrogenase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Hydroxyisobutyrate dehydrogenase species: Thermus thermophilus [TaxId: 274]
Probab=94.34 E-value=0.095 Score=39.90 Aligned_cols=23 Identities=30% Similarity=0.593 Sum_probs=20.9
Q ss_pred EEEEEcCCChhHHHHHHHHHhccc
Q 019990 7 RVLVTGAAGQIGYALVPMIARGIM 30 (332)
Q Consensus 7 kI~VtGaaG~IGs~l~~~L~~~~~ 30 (332)
||+++| .|.+|++++.+|++.++
T Consensus 2 kIg~IG-lG~MG~~ma~~L~~~g~ 24 (156)
T d2cvza2 2 KVAFIG-LGAMGYPMAGHLARRFP 24 (156)
T ss_dssp CEEEEC-CSTTHHHHHHHHHTTSC
T ss_pred eEEEEe-HHHHHHHHHHHHHhCCC
Confidence 799999 89999999999998764
|
| >d2bi7a1 c.4.1.3 (A:2-247,A:317-384) UDP-galactopyranose mutase, N-terminal domain {Klebsiella pneumoniae [TaxId: 573]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-binding domain superfamily: Nucleotide-binding domain family: UDP-galactopyranose mutase, N-terminal domain domain: UDP-galactopyranose mutase, N-terminal domain species: Klebsiella pneumoniae [TaxId: 573]
Probab=94.32 E-value=0.023 Score=49.00 Aligned_cols=41 Identities=22% Similarity=0.364 Sum_probs=33.4
Q ss_pred CCcEEEEEcCCChhHHHHHHHHHhcccCCCCCCeEEEEEecccchhhhhhhH
Q 019990 4 NPLRVLVTGAAGQIGYALVPMIARGIMLGPDQPVILHMLDIEPAAEALNGVK 55 (332)
Q Consensus 4 ~~~kI~VtGaaG~IGs~l~~~L~~~~~~~~~~~~~i~l~D~~~~~~~~~~~~ 55 (332)
+++||+|+| ||.-|...|..|.+.|. +|.+++.+. .+-|.+
T Consensus 1 k~KKI~IIG-aG~sGL~aA~~L~k~G~-------~V~viEk~~---~iGG~~ 41 (314)
T d2bi7a1 1 KSKKILIVG-AGFSGAVIGRQLAEKGH-------QVHIIDQRD---HIGGNS 41 (314)
T ss_dssp CCCEEEEEC-CSHHHHHHHHHHHTTTC-------EEEEEESSS---SSSGGG
T ss_pred CCCEEEEEC-CcHHHHHHHHHHHhCCC-------CEEEEECCC---CCcCee
Confidence 368999999 69999999999998775 899999753 455544
|
| >d1d7ya2 c.3.1.5 (A:116-236) NADH-dependent ferredoxin reductase, BphA4 {Pseudomonas sp., KKS102 [TaxId: 306]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: NADH-dependent ferredoxin reductase, BphA4 species: Pseudomonas sp., KKS102 [TaxId: 306]
Probab=94.23 E-value=0.037 Score=40.55 Aligned_cols=35 Identities=23% Similarity=0.462 Sum_probs=30.2
Q ss_pred CCcEEEEEcCCChhHHHHHHHHHhcccCCCCCCeEEEEEeccc
Q 019990 4 NPLRVLVTGAAGQIGYALVPMIARGIMLGPDQPVILHMLDIEP 46 (332)
Q Consensus 4 ~~~kI~VtGaaG~IGs~l~~~L~~~~~~~~~~~~~i~l~D~~~ 46 (332)
+.++|+|+| +|++|.-+|..|.+.+. ++.+++..+
T Consensus 29 ~~~~vvIIG-gG~iG~E~A~~l~~~g~-------~Vtli~~~~ 63 (121)
T d1d7ya2 29 PQSRLLIVG-GGVIGLELAATARTAGV-------HVSLVETQP 63 (121)
T ss_dssp TTCEEEEEC-CSHHHHHHHHHHHHTTC-------EEEEEESSS
T ss_pred cCCeEEEEC-cchhHHHHHHHhhcccc-------eEEEEeecc
Confidence 357999999 69999999999998875 899999754
|
| >d1l7da1 c.2.1.4 (A:144-326) Nicotinamide nucleotide transhydrogenase dI component {Rhodospirillum rubrum [TaxId: 1085]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: Nicotinamide nucleotide transhydrogenase dI component species: Rhodospirillum rubrum [TaxId: 1085]
Probab=94.12 E-value=0.1 Score=40.91 Aligned_cols=35 Identities=29% Similarity=0.399 Sum_probs=29.5
Q ss_pred CCcEEEEEcCCChhHHHHHHHHHhcccCCCCCCeEEEEEeccc
Q 019990 4 NPLRVLVTGAAGQIGYALVPMIARGIMLGPDQPVILHMLDIEP 46 (332)
Q Consensus 4 ~~~kI~VtGaaG~IGs~l~~~L~~~~~~~~~~~~~i~l~D~~~ 46 (332)
+|-||+|+| +|-+|.+-+...+..|- .|..+|.+.
T Consensus 28 ~pa~VvViG-aGvaG~~Aa~~A~~lGA-------~V~v~D~~~ 62 (183)
T d1l7da1 28 PPARVLVFG-VGVAGLQAIATAKRLGA-------VVMATDVRA 62 (183)
T ss_dssp CCCEEEEEC-CSHHHHHHHHHHHHTTC-------EEEEECSCS
T ss_pred CCcEEEEEc-CcHHHHHHHHHHHHcCC-------EEEEEeccH
Confidence 467999999 69999998887777664 899999875
|
| >d2voua1 c.3.1.2 (A:2-163,A:292-394) Dihydroxypyridine hydroxylase DhpH {Arthrobacter nicotinovorans [TaxId: 29320]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Dihydroxypyridine hydroxylase DhpH species: Arthrobacter nicotinovorans [TaxId: 29320]
Probab=94.10 E-value=0.029 Score=46.16 Aligned_cols=33 Identities=15% Similarity=0.184 Sum_probs=29.7
Q ss_pred CcEEEEEcCCChhHHHHHHHHHhcccCCCCCCeEEEEEecc
Q 019990 5 PLRVLVTGAAGQIGYALVPMIARGIMLGPDQPVILHMLDIE 45 (332)
Q Consensus 5 ~~kI~VtGaaG~IGs~l~~~L~~~~~~~~~~~~~i~l~D~~ 45 (332)
..||+|+| +|..|..+|..|.+.|+ ++.++|..
T Consensus 4 ~~kV~IiG-aG~aGl~~A~~L~~~G~-------~v~v~Er~ 36 (265)
T d2voua1 4 TDRIAVVG-GSISGLTAALMLRDAGV-------DVDVYERS 36 (265)
T ss_dssp CSEEEEEC-CSHHHHHHHHHHHHTTC-------EEEEECSS
T ss_pred CCcEEEEC-cCHHHHHHHHHHHHCCC-------CEEEEeCC
Confidence 57999999 69999999999999886 89999974
|
| >d1npya1 c.2.1.7 (A:103-269) Shikimate 5-dehydrogenase-like protein HI0607 {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Shikimate 5-dehydrogenase-like protein HI0607 species: Haemophilus influenzae [TaxId: 727]
Probab=93.96 E-value=0.1 Score=40.29 Aligned_cols=36 Identities=19% Similarity=0.279 Sum_probs=29.9
Q ss_pred CCcEEEEEcCCChhHHHHHHHHHhcccCCCCCCeEEEEEeccc
Q 019990 4 NPLRVLVTGAAGQIGYALVPMIARGIMLGPDQPVILHMLDIEP 46 (332)
Q Consensus 4 ~~~kI~VtGaaG~IGs~l~~~L~~~~~~~~~~~~~i~l~D~~~ 46 (332)
+.+||+|+| +|..+.++++.|...+. .+|.+++++.
T Consensus 16 ~~~~vlIlG-aGGaarai~~aL~~~g~------~~I~I~nR~~ 51 (167)
T d1npya1 16 KNAKVIVHG-SGGMAKAVVAAFKNSGF------EKLKIYARNV 51 (167)
T ss_dssp TTSCEEEEC-SSTTHHHHHHHHHHTTC------CCEEEECSCH
T ss_pred CCCeEEEEC-CCHHHHHHHHHHHHCCC------CEEEEecccH
Confidence 357899999 69999999999998775 2789998853
|
| >d1nhpa2 c.3.1.5 (A:120-242) NADH peroxidase {Enterococcus faecalis [TaxId: 1351]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: NADH peroxidase species: Enterococcus faecalis [TaxId: 1351]
Probab=93.93 E-value=0.048 Score=39.96 Aligned_cols=35 Identities=26% Similarity=0.328 Sum_probs=30.0
Q ss_pred CCcEEEEEcCCChhHHHHHHHHHhcccCCCCCCeEEEEEeccc
Q 019990 4 NPLRVLVTGAAGQIGYALVPMIARGIMLGPDQPVILHMLDIEP 46 (332)
Q Consensus 4 ~~~kI~VtGaaG~IGs~l~~~L~~~~~~~~~~~~~i~l~D~~~ 46 (332)
+.++|+|+| +|++|.-+|..|.+.|. ++++++..+
T Consensus 29 ~~k~vvViG-gG~iG~E~A~~l~~~g~-------~Vtlie~~~ 63 (123)
T d1nhpa2 29 EVNNVVVIG-SGYIGIEAAEAFAKAGK-------KVTVIDILD 63 (123)
T ss_dssp TCCEEEEEC-CSHHHHHHHHHHHHTTC-------EEEEEESSS
T ss_pred CCCEEEEEC-ChHHHHHHHHHhhccce-------EEEEEEecC
Confidence 467999999 69999999999998875 899998753
|
| >d1gtea4 c.4.1.1 (A:184-287,A:441-532) Dihydropyrimidine dehydrogenase, domain 2 {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-binding domain superfamily: Nucleotide-binding domain family: N-terminal domain of adrenodoxin reductase-like domain: Dihydropyrimidine dehydrogenase, domain 2 species: Pig (Sus scrofa) [TaxId: 9823]
Probab=93.91 E-value=0.024 Score=44.64 Aligned_cols=36 Identities=14% Similarity=0.211 Sum_probs=30.4
Q ss_pred CCcEEEEEcCCChhHHHHHHHHHhcccCCCCCCeEEEEEeccc
Q 019990 4 NPLRVLVTGAAGQIGYALVPMIARGIMLGPDQPVILHMLDIEP 46 (332)
Q Consensus 4 ~~~kI~VtGaaG~IGs~l~~~L~~~~~~~~~~~~~i~l~D~~~ 46 (332)
.++||+|+| +|..|...|..|.+.|+. +|.+++...
T Consensus 3 ~~~kVaIIG-aGpaGl~aA~~l~~~G~~------~V~v~E~~~ 38 (196)
T d1gtea4 3 YSAKIALLG-AGPASISCASFLARLGYS------DITIFEKQE 38 (196)
T ss_dssp GGCCEEEEC-CSHHHHHHHHHHHHTTCC------CEEEEESSS
T ss_pred CCCEEEEEC-ChHHHHHHHHHHHHCCCC------eEEEEEecC
Confidence 468999999 699999999999998861 588999753
|
| >d1b7go1 c.2.1.3 (O:1-138,O:301-340) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Archaeon Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) species: Archaeon Sulfolobus solfataricus [TaxId: 2287]
Probab=93.89 E-value=0.043 Score=43.20 Aligned_cols=80 Identities=20% Similarity=0.138 Sum_probs=44.1
Q ss_pred CcEEEEEcCCChhHHHHHHHHHhcccCCCCCCeEEEE-EecccchhhhhhhHhhhh-hhccC-----CccceEEeCCHHH
Q 019990 5 PLRVLVTGAAGQIGYALVPMIARGIMLGPDQPVILHM-LDIEPAAEALNGVKMELI-DAAFP-----LLKGVVATTDVVE 77 (332)
Q Consensus 5 ~~kI~VtGaaG~IGs~l~~~L~~~~~~~~~~~~~i~l-~D~~~~~~~~~~~~~dl~-~~~~~-----~~~~v~~~~~~~~ 77 (332)
|.||+|.| .|.||+.+++.|.+.+- .+++. -|..+..........+.. +.... ....+....++.+
T Consensus 1 MIKVaING-fGRIGR~v~Ral~~~~d------ievVaInd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~g~~~~ 73 (178)
T d1b7go1 1 MVNVAVNG-YGTIGKRVADAIIKQPD------MKLVGVAKTSPNYEAFIAHRRGIRIYVPQQSIKKFEESGIPVAGTVED 73 (178)
T ss_dssp CEEEEEEC-CSHHHHHHHHHHHTCTT------EEEEEEECSSCSHHHHHHHHTTCCEECCGGGHHHHHTTTCCCCCCHHH
T ss_pred CeEEEEEC-CCHHHHHHHHHHHhCCC------CEEEEEECCCCcHHHHHhcccCcceeccCccceeccccceecCCchhh
Confidence 57999999 89999999998887542 25544 454332111100000000 00000 0122333456667
Q ss_pred HhCCCcEEEEecCC
Q 019990 78 ACKDVNIAVMVGGF 91 (332)
Q Consensus 78 a~~~aDiVi~~ag~ 91 (332)
...++|+|+-+.|.
T Consensus 74 ~~~~vDiViecTG~ 87 (178)
T d1b7go1 74 LIKTSDIVVDTTPN 87 (178)
T ss_dssp HHHHCSEEEECCST
T ss_pred hhhcCCEEEECCCC
Confidence 77899999987653
|
| >d1edza1 c.2.1.7 (A:149-319) Methylenetetrahydrofolate dehydrogenase/cyclohydrolase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Methylenetetrahydrofolate dehydrogenase/cyclohydrolase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=93.79 E-value=0.014 Score=45.76 Aligned_cols=80 Identities=10% Similarity=0.106 Sum_probs=48.7
Q ss_pred CCcEEEEEcCCChhHHHHHHHHHhcccCCCCCCeEEEEEecccchhhhhhhHhhhhhhccCCccceEEe--CCHHHHhCC
Q 019990 4 NPLRVLVTGAAGQIGYALVPMIARGIMLGPDQPVILHMLDIEPAAEALNGVKMELIDAAFPLLKGVVAT--TDVVEACKD 81 (332)
Q Consensus 4 ~~~kI~VtGaaG~IGs~l~~~L~~~~~~~~~~~~~i~l~D~~~~~~~~~~~~~dl~~~~~~~~~~v~~~--~~~~~a~~~ 81 (332)
..++|+|+|.+.-||..++..|.+.+- .+..++.+............+.+. ...++... +.+.+....
T Consensus 28 ~GK~vvVIGrS~iVG~Pla~lL~~~ga-------TVt~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~lk~~~~~ 97 (171)
T d1edza1 28 YGKKCIVINRSEIVGRPLAALLANDGA-------TVYSVDVNNIQKFTRGESLKLNKH---HVEDLGEYSEDLLKKCSLD 97 (171)
T ss_dssp TTCEEEEECCCTTTHHHHHHHHHTTSC-------EEEEECSSEEEEEESCCCSSCCCC---EEEEEEECCHHHHHHHHHH
T ss_pred CCCEEEEECCccccHHHHHHHHHHCCC-------EEEEeccccccccccccceeeeee---ccccccccchhHHhhcccc
Confidence 357899999877889999999998764 788888653211111100111110 01122221 236677789
Q ss_pred CcEEEEecCCCC
Q 019990 82 VNIAVMVGGFPR 93 (332)
Q Consensus 82 aDiVi~~ag~~~ 93 (332)
+|+||...|.+.
T Consensus 98 aDIvIsavG~p~ 109 (171)
T d1edza1 98 SDVVITGVPSEN 109 (171)
T ss_dssp CSEEEECCCCTT
T ss_pred CCEEEEccCCCc
Confidence 999999888764
|
| >d3lada2 c.3.1.5 (A:159-277) Dihydrolipoamide dehydrogenase {Azotobacter vinelandii [TaxId: 354]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Dihydrolipoamide dehydrogenase species: Azotobacter vinelandii [TaxId: 354]
Probab=93.72 E-value=0.059 Score=39.21 Aligned_cols=35 Identities=31% Similarity=0.307 Sum_probs=29.8
Q ss_pred CCCcEEEEEcCCChhHHHHHHHHHhcccCCCCCCeEEEEEecc
Q 019990 3 KNPLRVLVTGAAGQIGYALVPMIARGIMLGPDQPVILHMLDIE 45 (332)
Q Consensus 3 ~~~~kI~VtGaaG~IGs~l~~~L~~~~~~~~~~~~~i~l~D~~ 45 (332)
..|.||+|+| +|+||.-+|..|.+.|. ++.++...
T Consensus 20 ~~p~~i~IiG-~G~ig~E~A~~l~~~G~-------~Vtiv~~~ 54 (119)
T d3lada2 20 NVPGKLGVIG-AGVIGLELGSVWARLGA-------EVTVLEAM 54 (119)
T ss_dssp SCCSEEEEEC-CSHHHHHHHHHHHHTTC-------EEEEEESS
T ss_pred cCCCeEEEEC-CChHHHHHHHHHHHcCC-------ceEEEEee
Confidence 4578999999 69999999999998775 78888754
|
| >d1tlta1 c.2.1.3 (A:5-127,A:268-308) Virulence factor MviM {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Virulence factor MviM species: Escherichia coli [TaxId: 562]
Probab=93.66 E-value=0.083 Score=40.54 Aligned_cols=66 Identities=12% Similarity=0.085 Sum_probs=38.4
Q ss_pred CcEEEEEcCCChhHHH-HHHHHHhcccCCCCCCeE-EEEEecccchhhhhhhHhhhhhhccCCccceEEeCCHHHHhCCC
Q 019990 5 PLRVLVTGAAGQIGYA-LVPMIARGIMLGPDQPVI-LHMLDIEPAAEALNGVKMELIDAAFPLLKGVVATTDVVEACKDV 82 (332)
Q Consensus 5 ~~kI~VtGaaG~IGs~-l~~~L~~~~~~~~~~~~~-i~l~D~~~~~~~~~~~~~dl~~~~~~~~~~v~~~~~~~~a~~~a 82 (332)
++||+|+| +|.+|.. ....|...+- .+ +.++|.+. ++......++ . +...++..+...+.
T Consensus 1 Kiri~iIG-~G~~g~~~~~~~l~~~~~------~~i~~v~d~~~--~~~~~~~~~~---~------~~~~~~~~~l~~~~ 62 (164)
T d1tlta1 1 KLRIGVVG-LGGIAQKAWLPVLAAASD------WTLQGAWSPTR--AKALPICESW---R------IPYADSLSSLAASC 62 (164)
T ss_dssp CEEEEEEC-CSTHHHHTHHHHHHSCSS------EEEEEEECSSC--TTHHHHHHHH---T------CCBCSSHHHHHTTC
T ss_pred CCEEEEEc-CCHHHHHHHHHHHHhCCC------cEEEEEEechh--Hhhhhhhhcc---c------ccccccchhhhhhc
Confidence 36899999 7999975 4556654321 24 45778754 2232222111 1 11234555556899
Q ss_pred cEEEEe
Q 019990 83 NIAVMV 88 (332)
Q Consensus 83 DiVi~~ 88 (332)
|+|+++
T Consensus 63 D~V~I~ 68 (164)
T d1tlta1 63 DAVFVH 68 (164)
T ss_dssp SEEEEC
T ss_pred cccccc
Confidence 999876
|
| >d1lvla2 c.3.1.5 (A:151-265) Dihydrolipoamide dehydrogenase {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Dihydrolipoamide dehydrogenase species: Pseudomonas putida [TaxId: 303]
Probab=93.65 E-value=0.054 Score=39.08 Aligned_cols=34 Identities=21% Similarity=0.274 Sum_probs=29.8
Q ss_pred CCcEEEEEcCCChhHHHHHHHHHhcccCCCCCCeEEEEEecc
Q 019990 4 NPLRVLVTGAAGQIGYALVPMIARGIMLGPDQPVILHMLDIE 45 (332)
Q Consensus 4 ~~~kI~VtGaaG~IGs~l~~~L~~~~~~~~~~~~~i~l~D~~ 45 (332)
.|+|++|+| +|++|.-+|..|.+.|. ++++++..
T Consensus 20 ~p~~vvIiG-gG~~G~E~A~~l~~~g~-------~Vtlve~~ 53 (115)
T d1lvla2 20 LPQHLVVVG-GGYIGLELGIAYRKLGA-------QVSVVEAR 53 (115)
T ss_dssp CCSEEEEEC-CSHHHHHHHHHHHHHTC-------EEEEECSS
T ss_pred CCCeEEEEC-CCHHHHHHHHHHhhccc-------ceEEEeee
Confidence 478999999 69999999999988775 89999874
|
| >d3grsa2 c.3.1.5 (A:166-290) Glutathione reductase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Glutathione reductase species: Human (Homo sapiens) [TaxId: 9606]
Probab=93.50 E-value=0.065 Score=39.32 Aligned_cols=35 Identities=17% Similarity=0.177 Sum_probs=30.3
Q ss_pred CCcEEEEEcCCChhHHHHHHHHHhcccCCCCCCeEEEEEeccc
Q 019990 4 NPLRVLVTGAAGQIGYALVPMIARGIMLGPDQPVILHMLDIEP 46 (332)
Q Consensus 4 ~~~kI~VtGaaG~IGs~l~~~L~~~~~~~~~~~~~i~l~D~~~ 46 (332)
-|+||+|+| +|+||.-+|..|.+.|. +|.+++..+
T Consensus 21 ~pk~vvIvG-gG~iG~E~A~~l~~~G~-------~Vtlv~~~~ 55 (125)
T d3grsa2 21 LPGRSVIVG-AGYIAVEMAGILSALGS-------KTSLMIRHD 55 (125)
T ss_dssp CCSEEEEEC-CSHHHHHHHHHHHHTTC-------EEEEECSSS
T ss_pred cCCEEEEEc-CCccHHHHHHHHhcCCc-------EEEEEeecc
Confidence 478999999 69999999999998875 899998753
|
| >d1q1ra2 c.3.1.5 (A:115-247) Putidaredoxin reductase {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Putidaredoxin reductase species: Pseudomonas putida [TaxId: 303]
Probab=93.47 E-value=0.057 Score=40.15 Aligned_cols=35 Identities=26% Similarity=0.429 Sum_probs=30.3
Q ss_pred CCcEEEEEcCCChhHHHHHHHHHhcccCCCCCCeEEEEEeccc
Q 019990 4 NPLRVLVTGAAGQIGYALVPMIARGIMLGPDQPVILHMLDIEP 46 (332)
Q Consensus 4 ~~~kI~VtGaaG~IGs~l~~~L~~~~~~~~~~~~~i~l~D~~~ 46 (332)
+++||+|+| +|++|.-+|..|...+. ++.+++..+
T Consensus 34 ~~k~v~VIG-gG~iG~E~A~~l~~~g~-------~Vtvie~~~ 68 (133)
T d1q1ra2 34 ADNRLVVIG-GGYIGLEVAATAIKANM-------HVTLLDTAA 68 (133)
T ss_dssp TTCEEEEEC-CSHHHHHHHHHHHHTTC-------EEEEECSSS
T ss_pred cCCEEEEEC-CchHHHHHHHHHHhhCc-------ceeeeeecc
Confidence 468999999 69999999999998875 899999753
|
| >d2ivda1 c.3.1.2 (A:10-306,A:415-464) Protoporphyrinogen oxidase {Myxococcus xanthus [TaxId: 34]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Protoporphyrinogen oxidase species: Myxococcus xanthus [TaxId: 34]
Probab=93.46 E-value=0.026 Score=46.82 Aligned_cols=32 Identities=22% Similarity=0.252 Sum_probs=28.4
Q ss_pred cEEEEEcCCChhHHHHHHHHHhcccCCCCCCeEEEEEecc
Q 019990 6 LRVLVTGAAGQIGYALVPMIARGIMLGPDQPVILHMLDIE 45 (332)
Q Consensus 6 ~kI~VtGaaG~IGs~l~~~L~~~~~~~~~~~~~i~l~D~~ 45 (332)
|||+|+| +|..|.+.|..|.+.|+ +|.+++..
T Consensus 1 m~V~IIG-aG~aGL~aA~~L~~~G~-------~V~vlE~~ 32 (347)
T d2ivda1 1 MNVAVVG-GGISGLAVAHHLRSRGT-------DAVLLESS 32 (347)
T ss_dssp CCEEEEC-CBHHHHHHHHHHHTTTC-------CEEEECSS
T ss_pred CeEEEEC-CCHHHHHHHHHHHhCCC-------CEEEEecC
Confidence 5799999 69999999999999886 79999864
|
| >d1h6va2 c.3.1.5 (A:171-292) Mammalian thioredoxin reductase {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Mammalian thioredoxin reductase species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=93.45 E-value=0.046 Score=40.06 Aligned_cols=35 Identities=17% Similarity=0.138 Sum_probs=29.1
Q ss_pred CCCcEEEEEcCCChhHHHHHHHHHhcccCCCCCCeEEEEEecc
Q 019990 3 KNPLRVLVTGAAGQIGYALVPMIARGIMLGPDQPVILHMLDIE 45 (332)
Q Consensus 3 ~~~~kI~VtGaaG~IGs~l~~~L~~~~~~~~~~~~~i~l~D~~ 45 (332)
..|.|++|+| +|+||.-+|..|.+.|. +|.++..+
T Consensus 18 ~~P~~vvIIG-gG~iG~E~A~~l~~lG~-------~Vtii~~~ 52 (122)
T d1h6va2 18 YCPGKTLVVG-ASYVALECAGFLAGIGL-------DVTVMVRS 52 (122)
T ss_dssp SCCCSEEEEC-CSHHHHHHHHHHHHTTC-------CEEEEESS
T ss_pred cCCCeEEEEC-CCccHHHHHHHHhhcCC-------eEEEEEec
Confidence 4578999999 69999999999998775 67777653
|
| >d2gv8a1 c.3.1.5 (A:3-180,A:288-444) Flavin-dependent monoxygenase SPBP16F5.08c {Schizosaccharomyces pombe [TaxId: 4896]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Flavin-dependent monoxygenase SPBP16F5.08c species: Schizosaccharomyces pombe [TaxId: 4896]
Probab=93.42 E-value=0.047 Score=47.06 Aligned_cols=37 Identities=11% Similarity=0.187 Sum_probs=30.0
Q ss_pred CCcEEEEEcCCChhHHHHHHHHHhcccCCCCCCeEEEEEeccc
Q 019990 4 NPLRVLVTGAAGQIGYALVPMIARGIMLGPDQPVILHMLDIEP 46 (332)
Q Consensus 4 ~~~kI~VtGaaG~IGs~l~~~L~~~~~~~~~~~~~i~l~D~~~ 46 (332)
+++||+||| +|.-|...|..|++.+.. .+|++++...
T Consensus 3 ~~KrVaIIG-aG~sGl~~A~~L~~~~~~-----~~v~vfEk~~ 39 (335)
T d2gv8a1 3 TIRKIAIIG-AGPSGLVTAKALLAEKAF-----DQVTLFERRG 39 (335)
T ss_dssp SCCEEEEEC-CSHHHHHHHHHHHTTTCC-----SEEEEECSSS
T ss_pred CCCeEEEEC-cCHHHHHHHHHHHHhCCC-----CCEEEEECCC
Confidence 567999999 699999999998876532 2899999753
|
| >d1xeaa1 c.2.1.3 (A:2-122,A:267-312) Putative oxidoreductase VCA1048 {Vibrio cholerae [TaxId: 666]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Putative oxidoreductase VCA1048 species: Vibrio cholerae [TaxId: 666]
Probab=93.42 E-value=0.073 Score=41.01 Aligned_cols=66 Identities=18% Similarity=0.276 Sum_probs=37.2
Q ss_pred cEEEEEcCCChhHHH-HHHHHHhcccCCCCCCeEEEEEecccchhhhhhhHhhhhhhccCCccceEEeCCHHHHh-CCCc
Q 019990 6 LRVLVTGAAGQIGYA-LVPMIARGIMLGPDQPVILHMLDIEPAAEALNGVKMELIDAAFPLLKGVVATTDVVEAC-KDVN 83 (332)
Q Consensus 6 ~kI~VtGaaG~IGs~-l~~~L~~~~~~~~~~~~~i~l~D~~~~~~~~~~~~~dl~~~~~~~~~~v~~~~~~~~a~-~~aD 83 (332)
+||+|+| +|.+|+. .+..|...+. .+++++|.+. +.+.....++.. + ...++..+.+ .+.|
T Consensus 2 irvgiiG-~G~~~~~~~~~~l~~~~~------~~~~~~d~~~--~~~~~~~~~~~~---~-----~~~~~~~~ll~~~iD 64 (167)
T d1xeaa1 2 LKIAMIG-LGDIAQKAYLPVLAQWPD------IELVLCTRNP--KVLGTLATRYRV---S-----ATCTDYRDVLQYGVD 64 (167)
T ss_dssp EEEEEEC-CCHHHHHTHHHHHTTSTT------EEEEEECSCH--HHHHHHHHHTTC---C-----CCCSSTTGGGGGCCS
T ss_pred eEEEEEc-CCHHHHHHHHHHHHhCCC------cEEEEEECCH--HHHHHHHHhccc---c-----cccccHHHhcccccc
Confidence 6899999 7999976 4555544332 3788888753 233322222211 0 0123333434 3789
Q ss_pred EEEEe
Q 019990 84 IAVMV 88 (332)
Q Consensus 84 iVi~~ 88 (332)
+|+++
T Consensus 65 ~V~I~ 69 (167)
T d1xeaa1 65 AVMIH 69 (167)
T ss_dssp EEEEC
T ss_pred eeccc
Confidence 99875
|
| >d1omoa_ c.2.1.13 (A:) Archaeal alanine dehydrogenase {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Ornithine cyclodeaminase-like domain: Archaeal alanine dehydrogenase species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]
Probab=93.40 E-value=0.11 Score=44.74 Aligned_cols=71 Identities=15% Similarity=0.156 Sum_probs=47.1
Q ss_pred CCcEEEEEcCCChhHHHHHHHHHhcccCCCCCCeEEEEEecccchhhhhhhHhhhhhhccCCccceEEeCCHHHHhCCCc
Q 019990 4 NPLRVLVTGAAGQIGYALVPMIARGIMLGPDQPVILHMLDIEPAAEALNGVKMELIDAAFPLLKGVVATTDVVEACKDVN 83 (332)
Q Consensus 4 ~~~kI~VtGaaG~IGs~l~~~L~~~~~~~~~~~~~i~l~D~~~~~~~~~~~~~dl~~~~~~~~~~v~~~~~~~~a~~~aD 83 (332)
+..+++|+| +|..+...+..|....-+ .+|++++++. ++.+....++.+.. +....+..+++++||
T Consensus 124 ~~~~l~iiG-aG~QA~~~~~al~~~~~i-----~~i~v~~r~~--e~~~~~~~~~~~~~------~~~~~~~~~a~~~aD 189 (320)
T d1omoa_ 124 NSSVFGFIG-CGTQAYFQLEALRRVFDI-----GEVKAYDVRE--KAAKKFVSYCEDRG------ISASVQPAEEASRCD 189 (320)
T ss_dssp TCCEEEEEC-CSHHHHHHHHHHHHHSCC-----CEEEEECSSH--HHHHHHHHHHHHTT------CCEEECCHHHHTSSS
T ss_pred CccEEEEec-CcccHHHHHHHHHHHhhh-----hhcccccCCH--HHHHHHHHHHHhcC------Cccccchhhhhcccc
Confidence 467899999 799999998887653322 3899999864 34444444444321 112234467889999
Q ss_pred EEEEe
Q 019990 84 IAVMV 88 (332)
Q Consensus 84 iVi~~ 88 (332)
+|+.+
T Consensus 190 iV~ta 194 (320)
T d1omoa_ 190 VLVTT 194 (320)
T ss_dssp EEEEC
T ss_pred EEEEe
Confidence 98765
|
| >d1ps9a3 c.4.1.1 (A:331-465,A:628-671) 2,4-dienoyl-CoA reductase, middle domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-binding domain superfamily: Nucleotide-binding domain family: N-terminal domain of adrenodoxin reductase-like domain: 2,4-dienoyl-CoA reductase, middle domain species: Escherichia coli [TaxId: 562]
Probab=93.39 E-value=0.055 Score=42.56 Aligned_cols=34 Identities=24% Similarity=0.258 Sum_probs=30.7
Q ss_pred CCcEEEEEcCCChhHHHHHHHHHhcccCCCCCCeEEEEEecc
Q 019990 4 NPLRVLVTGAAGQIGYALVPMIARGIMLGPDQPVILHMLDIE 45 (332)
Q Consensus 4 ~~~kI~VtGaaG~IGs~l~~~L~~~~~~~~~~~~~i~l~D~~ 45 (332)
+++||+|+| +|..|...|..|.+.|+ ++.++|..
T Consensus 42 ~~k~V~IIG-aGPAGL~AA~~la~~G~-------~Vtl~E~~ 75 (179)
T d1ps9a3 42 QKKNLAVVG-AGPAGLAFAINAAARGH-------QVTLFDAH 75 (179)
T ss_dssp SCCEEEEEC-CSHHHHHHHHHHHTTTC-------EEEEEESS
T ss_pred CCcEEEEEC-ccHHHHHHHHHHHhhcc-------ceEEEecc
Confidence 468999999 69999999999999887 89999975
|
| >d3c96a1 c.3.1.2 (A:4-182,A:294-402) Monooxygenase PhzS {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Monooxygenase PhzS species: Pseudomonas aeruginosa [TaxId: 287]
Probab=93.32 E-value=0.046 Score=45.12 Aligned_cols=35 Identities=20% Similarity=0.380 Sum_probs=29.5
Q ss_pred CcEEEEEcCCChhHHHHHHHHHhcccCCCCCCeEEEEEeccc
Q 019990 5 PLRVLVTGAAGQIGYALVPMIARGIMLGPDQPVILHMLDIEP 46 (332)
Q Consensus 5 ~~kI~VtGaaG~IGs~l~~~L~~~~~~~~~~~~~i~l~D~~~ 46 (332)
|+||+|+| +|..|..+|..|.+.|+ ..|.+++...
T Consensus 1 ~~~V~IvG-aG~aGl~~A~~L~~~Gi------~~V~V~Er~~ 35 (288)
T d3c96a1 1 PIDILIAG-AGIGGLSCALALHQAGI------GKVTLLESSS 35 (288)
T ss_dssp CCEEEEEC-CSHHHHHHHHHHHHTTC------SEEEEEESSS
T ss_pred CCEEEEEC-cCHHHHHHHHHHHhCCC------CeEEEEeCCC
Confidence 67999999 69999999999998874 1788888753
|
| >d1seza1 c.3.1.2 (A:13-329,A:442-497) Protoporphyrinogen oxidase {Tobacco (Nicotiana tabacum) [TaxId: 4097]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Protoporphyrinogen oxidase species: Tobacco (Nicotiana tabacum) [TaxId: 4097]
Probab=93.31 E-value=0.041 Score=45.64 Aligned_cols=32 Identities=28% Similarity=0.293 Sum_probs=28.8
Q ss_pred cEEEEEcCCChhHHHHHHHHHhcccCCCCCCeEEEEEecc
Q 019990 6 LRVLVTGAAGQIGYALVPMIARGIMLGPDQPVILHMLDIE 45 (332)
Q Consensus 6 ~kI~VtGaaG~IGs~l~~~L~~~~~~~~~~~~~i~l~D~~ 45 (332)
+||+||| +|.-|...|..|.+.|+ +|.+++..
T Consensus 2 KkV~IIG-aG~aGL~aA~~La~~G~-------~V~vlE~~ 33 (373)
T d1seza1 2 KRVAVIG-AGVSGLAAAYKLKIHGL-------NVTVFEAE 33 (373)
T ss_dssp CEEEEEC-CSHHHHHHHHHHHTTSC-------EEEEECSS
T ss_pred CEEEEEC-cCHHHHHHHHHHHhCCC-------CEEEEeCC
Confidence 7899999 69999999999999886 89999864
|
| >d1v8ba1 c.2.1.4 (A:235-397) S-adenosylhomocystein hydrolase {Plasmodium falciparum, isolate 3D7 [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: S-adenosylhomocystein hydrolase species: Plasmodium falciparum, isolate 3D7 [TaxId: 5833]
Probab=93.18 E-value=0.19 Score=38.50 Aligned_cols=68 Identities=18% Similarity=0.238 Sum_probs=49.3
Q ss_pred CCcEEEEEcCCChhHHHHHHHHHhcccCCCCCCeEEEEEecccchhhhhhhHhhhhhhccCCccceEEeCCHHHHhCCCc
Q 019990 4 NPLRVLVTGAAGQIGYALVPMIARGIMLGPDQPVILHMLDIEPAAEALNGVKMELIDAAFPLLKGVVATTDVVEACKDVN 83 (332)
Q Consensus 4 ~~~kI~VtGaaG~IGs~l~~~L~~~~~~~~~~~~~i~l~D~~~~~~~~~~~~~dl~~~~~~~~~~v~~~~~~~~a~~~aD 83 (332)
..++++|.| =|.+|+.+|..|...+- .|.++++++- ..+++. + | .+.. ..+.++++.+|
T Consensus 22 aGk~vvV~G-YG~vGrG~A~~~rg~Ga-------~V~V~E~DPi-~alqA~-m---d-------Gf~v-~~~~~a~~~aD 80 (163)
T d1v8ba1 22 SGKIVVICG-YGDVGKGCASSMKGLGA-------RVYITEIDPI-CAIQAV-M---E-------GFNV-VTLDEIVDKGD 80 (163)
T ss_dssp TTSEEEEEC-CSHHHHHHHHHHHHHTC-------EEEEECSCHH-HHHHHH-T---T-------TCEE-CCHHHHTTTCS
T ss_pred cCCEEEEec-ccccchhHHHHHHhCCC-------EEEEEecCch-hhHHHH-h---c-------CCcc-CchhHccccCc
Confidence 457899999 79999999999998875 7888888642 122221 1 1 1232 45789999999
Q ss_pred EEEEecCCC
Q 019990 84 IAVMVGGFP 92 (332)
Q Consensus 84 iVi~~ag~~ 92 (332)
++|.+-|..
T Consensus 81 i~vTaTGn~ 89 (163)
T d1v8ba1 81 FFITCTGNV 89 (163)
T ss_dssp EEEECCSSS
T ss_pred EEEEcCCCC
Confidence 999876653
|
| >d1jw9b_ c.111.1.1 (B:) Molybdenum cofactor biosynthesis protein MoeB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Activating enzymes of the ubiquitin-like proteins superfamily: Activating enzymes of the ubiquitin-like proteins family: Molybdenum cofactor biosynthesis protein MoeB domain: Molybdenum cofactor biosynthesis protein MoeB species: Escherichia coli [TaxId: 562]
Probab=93.14 E-value=0.043 Score=45.39 Aligned_cols=34 Identities=35% Similarity=0.563 Sum_probs=29.9
Q ss_pred CcEEEEEcCCChhHHHHHHHHHhcccCCCCCCeEEEEEecc
Q 019990 5 PLRVLVTGAAGQIGYALVPMIARGIMLGPDQPVILHMLDIE 45 (332)
Q Consensus 5 ~~kI~VtGaaG~IGs~l~~~L~~~~~~~~~~~~~i~l~D~~ 45 (332)
..||+|+| +|.+|++++..|...|+ + +++++|.+
T Consensus 30 ~~~VliiG-~GglGs~va~~La~~Gv-g-----~i~lvD~D 63 (247)
T d1jw9b_ 30 DSRVLIVG-LGGLGCAASQYLASAGV-G-----NLTLLDFD 63 (247)
T ss_dssp HCEEEEEC-CSHHHHHHHHHHHHHTC-S-----EEEEECCC
T ss_pred CCCEEEEC-CCHHHHHHHHHHHHcCC-C-----eEEEECCc
Confidence 46899999 79999999999999886 2 89999964
|
| >d1e3ja2 c.2.1.1 (A:143-312) Ketose reductase (sorbitol dehydrogenase) {Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Ketose reductase (sorbitol dehydrogenase) species: Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]
Probab=93.07 E-value=0.13 Score=39.45 Aligned_cols=35 Identities=29% Similarity=0.204 Sum_probs=28.3
Q ss_pred CCcEEEEEcCCChhHHHHHHHHHhcccCCCCCCeEEEEEeccc
Q 019990 4 NPLRVLVTGAAGQIGYALVPMIARGIMLGPDQPVILHMLDIEP 46 (332)
Q Consensus 4 ~~~kI~VtGaaG~IGs~l~~~L~~~~~~~~~~~~~i~l~D~~~ 46 (332)
...+|+|+| +|.||...+..+...|. ++..+|.++
T Consensus 26 ~g~~vlV~G-~G~vG~~~~~~ak~~Ga-------~vi~v~~~~ 60 (170)
T d1e3ja2 26 LGTTVLVIG-AGPIGLVSVLAAKAYGA-------FVVCTARSP 60 (170)
T ss_dssp TTCEEEEEC-CSHHHHHHHHHHHHTTC-------EEEEEESCH
T ss_pred CCCEEEEEc-ccccchhhHhhHhhhcc-------cccccchHH
Confidence 346899998 79999998888877764 788999754
|
| >d1o0sa1 c.2.1.7 (A:296-603) Mitochondrial NAD(P)-dependent malic enzyme {Pig roundworm (Ascaris suum) [TaxId: 6253]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Mitochondrial NAD(P)-dependent malic enzyme species: Pig roundworm (Ascaris suum) [TaxId: 6253]
Probab=93.03 E-value=0.067 Score=45.60 Aligned_cols=112 Identities=15% Similarity=0.213 Sum_probs=61.4
Q ss_pred CcEEEEEcCCChhHHHHHHHHHhc----ccCCCCCCeEEEEEecccchhhhhhhHhhhhhhccCCccceEEeCCHHHHhC
Q 019990 5 PLRVLVTGAAGQIGYALVPMIARG----IMLGPDQPVILHMLDIEPAAEALNGVKMELIDAAFPLLKGVVATTDVVEACK 80 (332)
Q Consensus 5 ~~kI~VtGaaG~IGs~l~~~L~~~----~~~~~~~~~~i~l~D~~~~~~~~~~~~~dl~~~~~~~~~~v~~~~~~~~a~~ 80 (332)
..||+|.| +|.-|..++..|+.. |+...+-..++.++|... .+.....|+.+...++..+.....++.+.++
T Consensus 25 d~kivi~G-AGaAg~gia~~l~~~~~~~G~~~~~a~~~i~~vD~~G---lv~~~r~d~~~~k~~~a~~~~~~~~l~~~i~ 100 (308)
T d1o0sa1 25 QEKYLFFG-AGAASTGIAEMIVHQMQNEGISKEEACNRIYLMDIDG---LVTKNRKEMNPRHVQFAKDMPETTSILEVIR 100 (308)
T ss_dssp GCCEEEEC-CSHHHHHHHHHHHHHHHTTTCCHHHHHHTEEEEETTE---ECBTTCSSCCGGGTTTCBSSCCCCCHHHHHH
T ss_pred HcEEEEEC-cCHHHHHHHHHHHHHHHhcCCchhhhhceEEEEeCCC---CccCCCcccCHHHHHHHHhcccCCcHHHHHh
Confidence 35899999 699999999887643 221000012599999764 2222223333322233333333345555544
Q ss_pred --CCcEEEEecCCCCCCCCChhHHHhhhHHHHHHHHHHHHhhcCCCcEEEEEeCChh
Q 019990 81 --DVNIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEKHAAPNCKVLVVANPAN 135 (332)
Q Consensus 81 --~aDiVi~~ag~~~~~~~~~~~~~~~N~~~~~~i~~~i~~~~~~~~~viv~snp~~ 135 (332)
..+++|-+.+.+ |. +. +++++.+.+.+ ++.+|+-.|||..
T Consensus 101 ~~kptvliG~s~~~---g~-----ft------~evv~~Ma~~~-~~PIIFaLSNPtp 142 (308)
T d1o0sa1 101 AARPGALIGASTVR---GA-----FN------EEVIRAMAEIN-ERPIIFALSNPTS 142 (308)
T ss_dssp HHCCSEEEECSSCT---TC-----SC------HHHHHHHHHHC-SSCEEEECCSSGG
T ss_pred ccccccEEeccccc---CC-----CC------HHHHHHHHhhC-CCcEEEEccCCCC
Confidence 345666554433 21 11 34456666665 5667788999963
|
| >d1r0ka2 c.2.1.3 (A:3-126,A:265-290) 1-deoxy-D-xylulose-5-phosphate reductoisomerase {Zymomonas mobilis [TaxId: 542]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: 1-deoxy-D-xylulose-5-phosphate reductoisomerase species: Zymomonas mobilis [TaxId: 542]
Probab=92.93 E-value=0.1 Score=39.66 Aligned_cols=44 Identities=27% Similarity=0.381 Sum_probs=29.4
Q ss_pred CCcEEEEEcCCChhHHHHHHHHHhcccCCCCCCeEEEEEecccchhhhh
Q 019990 4 NPLRVLVTGAAGQIGYALVPMIARGIMLGPDQPVILHMLDIEPAAEALN 52 (332)
Q Consensus 4 ~~~kI~VtGaaG~IGs~l~~~L~~~~~~~~~~~~~i~l~D~~~~~~~~~ 52 (332)
+|++|+|.|++|.||.+...-+.+..- ..+|..+--..+-+.+.
T Consensus 1 ~pK~I~IlGsTGSIG~~tL~Vi~~~~d-----~f~v~~lsa~~N~~~L~ 44 (150)
T d1r0ka2 1 QPRTVTVLGATGSIGHSTLDLIERNLD-----RYQVIALTANRNVKDLA 44 (150)
T ss_dssp CCEEEEEETTTSHHHHHHHHHHHHTGG-----GEEEEEEEESSCHHHHH
T ss_pred CCcEEEEECCCcHHHHHHHHHHHcCCC-----CcEEEEEEeCCCHHHHH
Confidence 578999999999999998887765321 12555554433333343
|
| >d1dxha2 c.78.1.1 (A:151-335) Ornithine transcarbamoylase {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: ATC-like superfamily: Aspartate/ornithine carbamoyltransferase family: Aspartate/ornithine carbamoyltransferase domain: Ornithine transcarbamoylase species: Pseudomonas aeruginosa [TaxId: 287]
Probab=92.87 E-value=0.23 Score=38.91 Aligned_cols=77 Identities=17% Similarity=0.050 Sum_probs=47.6
Q ss_pred CCcEEEEEc-CCChhHHHHHHHHHhcccCCCCCCeEEEEEecccchhhhhhhHhhhhhhccCCccceEEeCCHHHHhCCC
Q 019990 4 NPLRVLVTG-AAGQIGYALVPMIARGIMLGPDQPVILHMLDIEPAAEALNGVKMELIDAAFPLLKGVVATTDVVEACKDV 82 (332)
Q Consensus 4 ~~~kI~VtG-aaG~IGs~l~~~L~~~~~~~~~~~~~i~l~D~~~~~~~~~~~~~dl~~~~~~~~~~v~~~~~~~~a~~~a 82 (332)
+..||+++| +...|..+++..+..-|. +++++-..... .-.....+...........++...++.++++++
T Consensus 4 ~~lkia~vGD~~nnV~~Sli~~~~~~G~-------~l~l~~P~~~~-~~~~~~~~~~~~~~~~~~~~~~~~d~~eai~~a 75 (185)
T d1dxha2 4 HDISYAYLGDARNNMGNSLLLIGAKLGM-------DVRIAAPKALW-PHDEFVAQCKKFAEESGAKLTLTEDPKEAVKGV 75 (185)
T ss_dssp GGCEEEEESCCSSHHHHHHHHHHHHTTC-------EEEEECCGGGS-CCHHHHHHHHHHHHHHTCEEEEESCHHHHTTTC
T ss_pred CCCEEEEEcCCcchHHHHHHHHHHHcCC-------EEEEEccHHHH-hhhHHHHHHHHHhhccCCeEEEEeChhhccccc
Confidence 467999999 434788888887776664 88888753210 011111111111111224567778999999999
Q ss_pred cEEEEe
Q 019990 83 NIAVMV 88 (332)
Q Consensus 83 DiVi~~ 88 (332)
|+|...
T Consensus 76 DvVyt~ 81 (185)
T d1dxha2 76 DFVHTD 81 (185)
T ss_dssp SEEEEC
T ss_pred cEEEee
Confidence 998765
|
| >d2czca2 c.2.1.3 (A:1-139,A:302-334) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Archaeon Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Probab=92.87 E-value=0.12 Score=40.22 Aligned_cols=80 Identities=19% Similarity=0.200 Sum_probs=43.6
Q ss_pred CcEEEEEcCCChhHHHHHHHHHhcccCCCCCCeEE-EEEecccchhhhhhhHhh--hhhhccCC-----ccceEEeCCHH
Q 019990 5 PLRVLVTGAAGQIGYALVPMIARGIMLGPDQPVIL-HMLDIEPAAEALNGVKME--LIDAAFPL-----LKGVVATTDVV 76 (332)
Q Consensus 5 ~~kI~VtGaaG~IGs~l~~~L~~~~~~~~~~~~~i-~l~D~~~~~~~~~~~~~d--l~~~~~~~-----~~~v~~~~~~~ 76 (332)
++||+|.| .|.||+.++..|...+- .++ .+-|..+..........+ +.+..... ...+....++.
T Consensus 2 ~irIaING-fGRIGR~v~Ral~~~~d------ieiVaINd~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 74 (172)
T d2czca2 2 KVKVGVNG-YGTIGKRVAYAVTKQDD------MELIGITKTKPDFEAYRAKELGIPVYAASEEFIPRFEKEGFEVAGTLN 74 (172)
T ss_dssp CEEEEEEC-CSHHHHHHHHHHHTCTT------EEEEEEEESSCSHHHHHHHHTTCCEEESSGGGHHHHHHHTCCCSCBHH
T ss_pred cEEEEEEC-CCHHHHHHHHHHHhCCC------ceEEEEecCCChHHHHHhhhcCceeecccccceeeecccCccccchhh
Confidence 46899999 89999999988876542 244 455554322111111111 00000000 01233334566
Q ss_pred HHhCCCcEEEEecCC
Q 019990 77 EACKDVNIAVMVGGF 91 (332)
Q Consensus 77 ~a~~~aDiVi~~ag~ 91 (332)
+...++|+|+=+.|.
T Consensus 75 ~~~~~vDvViEcTG~ 89 (172)
T d2czca2 75 DLLEKVDIIVDATPG 89 (172)
T ss_dssp HHHTTCSEEEECCST
T ss_pred hhhccCCEEEECCCC
Confidence 667899999987654
|
| >d1ryia1 c.3.1.2 (A:1-218,A:307-364) Glycine oxidase ThiO {Bacillus sp. [TaxId: 1409]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Glycine oxidase ThiO species: Bacillus sp. [TaxId: 1409]
Probab=92.86 E-value=0.045 Score=45.45 Aligned_cols=32 Identities=22% Similarity=0.319 Sum_probs=28.3
Q ss_pred cEEEEEcCCChhHHHHHHHHHhcccCCCCCCeEEEEEecc
Q 019990 6 LRVLVTGAAGQIGYALVPMIARGIMLGPDQPVILHMLDIE 45 (332)
Q Consensus 6 ~kI~VtGaaG~IGs~l~~~L~~~~~~~~~~~~~i~l~D~~ 45 (332)
-.|+|+| +|.+|.++|+.|.+.|. +|.++|..
T Consensus 5 ~DvvIIG-aGi~Gls~A~~La~~G~-------~V~vlE~~ 36 (276)
T d1ryia1 5 YEAVVIG-GGIIGSAIAYYLAKENK-------NTALFESG 36 (276)
T ss_dssp EEEEEEC-CSHHHHHHHHHHHHTTC-------CEEEECSS
T ss_pred CCEEEEC-cCHHHHHHHHHHHHCCC-------cEEEEeCC
Confidence 3599999 69999999999999885 79999974
|
| >d1cf2o1 c.2.1.3 (O:1-138,O:304-336) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Archaeon Methanothermus fervidus [TaxId: 2180]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) species: Archaeon Methanothermus fervidus [TaxId: 2180]
Probab=92.81 E-value=0.09 Score=40.94 Aligned_cols=80 Identities=18% Similarity=0.118 Sum_probs=43.3
Q ss_pred CcEEEEEcCCChhHHHHHHHHHhcccCCCCCCeEEEE-EecccchhhhhhhHhhhhhhc-cCC------ccceEEeCCHH
Q 019990 5 PLRVLVTGAAGQIGYALVPMIARGIMLGPDQPVILHM-LDIEPAAEALNGVKMELIDAA-FPL------LKGVVATTDVV 76 (332)
Q Consensus 5 ~~kI~VtGaaG~IGs~l~~~L~~~~~~~~~~~~~i~l-~D~~~~~~~~~~~~~dl~~~~-~~~------~~~v~~~~~~~ 76 (332)
|+||+|-| .|.||+.+.+.|...+. .+++. -|..+..........+..... .+. ...+....+..
T Consensus 1 M~~VgING-fGRIGR~v~R~l~~~~d------i~vvaInd~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~v~g~~~ 73 (171)
T d1cf2o1 1 MKAVAING-YGTVGKRVADAIAQQDD------MKVIGVSKTRPDFEARMALKKGYDLYVAIPERVKLFEKAGIEVAGTVD 73 (171)
T ss_dssp CEEEEEEC-CSHHHHHHHHHHHTSSS------EEEEEEEESSCSHHHHHHHHTTCCEEESSGGGHHHHHHTTCCCCEEHH
T ss_pred CeEEEEEc-CcHHHHHHHHHHHhCCC------ceEEEEecCCcHHHHHHHHhcCCceEecccccceeecccCcccCCChh
Confidence 57999999 89999999988776542 25544 444332111111111111100 000 01233333556
Q ss_pred HHhCCCcEEEEecCC
Q 019990 77 EACKDVNIAVMVGGF 91 (332)
Q Consensus 77 ~a~~~aDiVi~~ag~ 91 (332)
+++.++|+|+-+-|.
T Consensus 74 ~~~~~vDvViEcTG~ 88 (171)
T d1cf2o1 74 DMLDEADIVIDCTPE 88 (171)
T ss_dssp HHHHTCSEEEECCST
T ss_pred HhhcCCCEEEEccCC
Confidence 667899999987653
|
| >d1nhpa1 c.3.1.5 (A:1-119,A:243-321) NADH peroxidase {Enterococcus faecalis [TaxId: 1351]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: NADH peroxidase species: Enterococcus faecalis [TaxId: 1351]
Probab=92.72 E-value=0.066 Score=42.32 Aligned_cols=34 Identities=18% Similarity=0.216 Sum_probs=27.3
Q ss_pred cEEEEEcCCChhHHHHHHHHHhcccCCCCCCeEEEEEecc
Q 019990 6 LRVLVTGAAGQIGYALVPMIARGIMLGPDQPVILHMLDIE 45 (332)
Q Consensus 6 ~kI~VtGaaG~IGs~l~~~L~~~~~~~~~~~~~i~l~D~~ 45 (332)
|||+|+| +|++|..+|..|...+.- .+|.+++..
T Consensus 1 ~KVvIIG-gG~~G~e~A~~l~~~~~~-----~~V~v~~~~ 34 (198)
T d1nhpa1 1 MKVIVLG-SSHGGYEAVEELLNLHPD-----AEIQWYEKG 34 (198)
T ss_dssp CEEEEEC-SSHHHHHHHHHHHHHCTT-----SEEEEEESS
T ss_pred CEEEEEC-CcHHHHHHHHHHHhcCCC-----CeEEEEeCC
Confidence 6899999 699999999999765321 389999864
|
| >d1lqta2 c.4.1.1 (A:2-108,A:325-456) Ferredoxin:NADP reductase FprA {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-binding domain superfamily: Nucleotide-binding domain family: N-terminal domain of adrenodoxin reductase-like domain: Ferredoxin:NADP reductase FprA species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=92.72 E-value=0.055 Score=43.71 Aligned_cols=42 Identities=17% Similarity=0.369 Sum_probs=31.7
Q ss_pred CCcEEEEEcCCChhHHHHHHHHHhcccCCCCCCeEEEEEeccc
Q 019990 4 NPLRVLVTGAAGQIGYALVPMIARGIMLGPDQPVILHMLDIEP 46 (332)
Q Consensus 4 ~~~kI~VtGaaG~IGs~l~~~L~~~~~~~~~~~~~i~l~D~~~ 46 (332)
+|.||+|+| +|.-|.+.|..|.+.|+.......+|.++|..+
T Consensus 1 rp~~VaVIG-aGpaGL~aA~~L~~~G~~~~~~~~~V~v~E~~~ 42 (239)
T d1lqta2 1 RPYYIAIVG-SGPSAFFAAASLLKAADTTEDLDMAVDMLEMLP 42 (239)
T ss_dssp CCEEEEEEC-CSHHHHHHHHHHHHHHHHSTTCCEEEEEEESSS
T ss_pred CCcEEEEEC-cCHHHHHHHHHHHHcCCccccCCCceEEEecCC
Confidence 467999999 799999999999887642111124899999753
|
| >d1ojta2 c.3.1.5 (A:276-400) Dihydrolipoamide dehydrogenase {Neisseria meningitidis [TaxId: 487]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Dihydrolipoamide dehydrogenase species: Neisseria meningitidis [TaxId: 487]
Probab=92.55 E-value=0.1 Score=38.31 Aligned_cols=36 Identities=19% Similarity=0.322 Sum_probs=30.5
Q ss_pred CCCcEEEEEcCCChhHHHHHHHHHhcccCCCCCCeEEEEEeccc
Q 019990 3 KNPLRVLVTGAAGQIGYALVPMIARGIMLGPDQPVILHMLDIEP 46 (332)
Q Consensus 3 ~~~~kI~VtGaaG~IGs~l~~~L~~~~~~~~~~~~~i~l~D~~~ 46 (332)
..+.+++|+| +|+||.-+|..|...|. ++++++..+
T Consensus 24 ~~p~~vvIiG-gG~IG~E~A~~~~~~G~-------~Vtive~~~ 59 (125)
T d1ojta2 24 EVPGKLLIIG-GGIIGLEMGTVYSTLGS-------RLDVVEMMD 59 (125)
T ss_dssp CCCSEEEEES-CSHHHHHHHHHHHHHTC-------EEEEECSSS
T ss_pred ccCCeEEEEC-CCHHHHHHHHHhhcCCC-------EEEEEEeec
Confidence 4578999999 69999999999988775 899998643
|
| >d1k0ia1 c.3.1.2 (A:1-173,A:276-394) p-Hydroxybenzoate hydroxylase, PHBH {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: p-Hydroxybenzoate hydroxylase, PHBH species: Pseudomonas aeruginosa [TaxId: 287]
Probab=92.41 E-value=0.048 Score=45.72 Aligned_cols=32 Identities=22% Similarity=0.330 Sum_probs=28.7
Q ss_pred EEEEEcCCChhHHHHHHHHHhcccCCCCCCeEEEEEeccc
Q 019990 7 RVLVTGAAGQIGYALVPMIARGIMLGPDQPVILHMLDIEP 46 (332)
Q Consensus 7 kI~VtGaaG~IGs~l~~~L~~~~~~~~~~~~~i~l~D~~~ 46 (332)
+|+|+| +|..|..+|..|.+.|+ ++.++|...
T Consensus 4 ~V~IvG-aGp~Gl~~A~~L~~~G~-------~v~vlE~~~ 35 (292)
T d1k0ia1 4 QVAIIG-AGPSGLLLGQLLHKAGI-------DNVILERQT 35 (292)
T ss_dssp SEEEEC-CSHHHHHHHHHHHHHTC-------CEEEECSSC
T ss_pred CEEEEC-cCHHHHHHHHHHHHCCC-------CEEEEeCCC
Confidence 699999 69999999999999886 799999754
|
| >d3etja2 c.30.1.1 (A:1-78) N5-carboxyaminoimidazole ribonucleotide synthetase PurK (AIRC), N-domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PreATP-grasp domain superfamily: PreATP-grasp domain family: BC N-terminal domain-like domain: N5-carboxyaminoimidazole ribonucleotide synthetase PurK (AIRC), N-domain species: Escherichia coli [TaxId: 562]
Probab=92.40 E-value=0.086 Score=35.33 Aligned_cols=34 Identities=21% Similarity=0.181 Sum_probs=28.5
Q ss_pred CcEEEEEcCCChhHHHHHHHHHhcccCCCCCCeEEEEEeccc
Q 019990 5 PLRVLVTGAAGQIGYALVPMIARGIMLGPDQPVILHMLDIEP 46 (332)
Q Consensus 5 ~~kI~VtGaaG~IGs~l~~~L~~~~~~~~~~~~~i~l~D~~~ 46 (332)
+++|+|+| +|..|+-++..-...|+ +++.+|.+.
T Consensus 1 ~k~vgIlG-~GQLgrMl~~Aa~~LG~-------~v~vldp~~ 34 (78)
T d3etja2 1 MKQVCVLG-NGQLGRMLRQAGEPLGI-------AVWPVGLDA 34 (78)
T ss_dssp CEEEEEEB-CSHHHHHHHHHHGGGTE-------EEEEECTTS
T ss_pred CCEEEEEc-CCHHHHHHHHHHHHcCC-------EEEEEcCCC
Confidence 46899999 69999999887777776 899999754
|
| >d1zh8a1 c.2.1.3 (A:4-131,A:276-328) Hypothetical protein TM0312 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Hypothetical protein TM0312 species: Thermotoga maritima [TaxId: 2336]
Probab=92.39 E-value=0.22 Score=38.66 Aligned_cols=68 Identities=9% Similarity=0.017 Sum_probs=38.9
Q ss_pred CcEEEEEcCCChhHHH-HHHHHHhcccCCCCCCeEEE-EEecccchhhhhhhHhhhhhhccCCccceEEeCCHHHHhC--
Q 019990 5 PLRVLVTGAAGQIGYA-LVPMIARGIMLGPDQPVILH-MLDIEPAAEALNGVKMELIDAAFPLLKGVVATTDVVEACK-- 80 (332)
Q Consensus 5 ~~kI~VtGaaG~IGs~-l~~~L~~~~~~~~~~~~~i~-l~D~~~~~~~~~~~~~dl~~~~~~~~~~v~~~~~~~~a~~-- 80 (332)
++||+|+| +|.+|+. .+..+...+. ..+++ ++|.+. +++.....++. .....++..+.++
T Consensus 3 kirigiIG-~G~~g~~~h~~~l~~~~~-----~~~i~~v~d~~~--~~~~~~~~~~~--------~~~~~~~~~ell~~~ 66 (181)
T d1zh8a1 3 KIRLGIVG-CGIAARELHLPALKNLSH-----LFEITAVTSRTR--SHAEEFAKMVG--------NPAVFDSYEELLESG 66 (181)
T ss_dssp CEEEEEEC-CSHHHHHTHHHHHHTTTT-----TEEEEEEECSSH--HHHHHHHHHHS--------SCEEESCHHHHHHSS
T ss_pred CcEEEEEc-CCHHHHHHHHHHHHhCCC-----CeEEEEEEeccH--hhhhhhhcccc--------ccceeeeeecccccc
Confidence 57999999 7999986 4566654221 12554 677753 22322211111 1233466777664
Q ss_pred CCcEEEEe
Q 019990 81 DVNIAVMV 88 (332)
Q Consensus 81 ~aDiVi~~ 88 (332)
+.|+|+++
T Consensus 67 ~id~v~I~ 74 (181)
T d1zh8a1 67 LVDAVDLT 74 (181)
T ss_dssp CCSEEEEC
T ss_pred ccceeecc
Confidence 57888876
|
| >d1fcda1 c.3.1.5 (A:1-114,A:256-327) Flavocytochrome c sulfide dehydrogenase, FCSD, flavin-binding subunit {Purple phototrophic bacterium (Chromatium vinosum) [TaxId: 1049]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Flavocytochrome c sulfide dehydrogenase, FCSD, flavin-binding subunit species: Purple phototrophic bacterium (Chromatium vinosum) [TaxId: 1049]
Probab=92.27 E-value=0.082 Score=40.41 Aligned_cols=36 Identities=17% Similarity=0.229 Sum_probs=28.9
Q ss_pred CcEEEEEcCCChhHHHHHHHHHhcccCCCCCCeEEEEEeccc
Q 019990 5 PLRVLVTGAAGQIGYALVPMIARGIMLGPDQPVILHMLDIEP 46 (332)
Q Consensus 5 ~~kI~VtGaaG~IGs~l~~~L~~~~~~~~~~~~~i~l~D~~~ 46 (332)
.+||.|+| +|++|..++..|.+.+. ..+|+++|..+
T Consensus 2 gkrivIvG-gG~~G~e~A~~l~~~~~-----~~~Vtlie~~~ 37 (186)
T d1fcda1 2 GRKVVVVG-GGTGGATAAKYIKLADP-----SIEVTLIEPNT 37 (186)
T ss_dssp CCEEEEEC-CSHHHHHHHHHHHHHCT-----TSEEEEECSCS
T ss_pred CCcEEEEC-ccHHHHHHHHHHHHcCC-----CCcEEEEECCC
Confidence 36999999 69999999999987653 13899998654
|
| >d1djqa3 c.4.1.1 (A:341-489,A:646-729) Trimethylamine dehydrogenase, middle domain {Methylophilus methylotrophus, w3a1 [TaxId: 17]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-binding domain superfamily: Nucleotide-binding domain family: N-terminal domain of adrenodoxin reductase-like domain: Trimethylamine dehydrogenase, middle domain species: Methylophilus methylotrophus, w3a1 [TaxId: 17]
Probab=92.08 E-value=0.1 Score=42.32 Aligned_cols=34 Identities=26% Similarity=0.378 Sum_probs=30.3
Q ss_pred CCcEEEEEcCCChhHHHHHHHHHhcccCCCCCCeEEEEEecc
Q 019990 4 NPLRVLVTGAAGQIGYALVPMIARGIMLGPDQPVILHMLDIE 45 (332)
Q Consensus 4 ~~~kI~VtGaaG~IGs~l~~~L~~~~~~~~~~~~~i~l~D~~ 45 (332)
..+||+|+| +|+.|...|..|.+.|+ ++.+++..
T Consensus 48 ~~k~VvIIG-aGpAGl~aA~~l~~~G~-------~v~l~E~~ 81 (233)
T d1djqa3 48 NKDSVLIVG-AGPSGSEAARVLMESGY-------TVHLTDTA 81 (233)
T ss_dssp SCCEEEEEC-CSHHHHHHHHHHHHTTC-------EEEEECSS
T ss_pred CCceEEEEc-ccHHHHHHHHHHHHhcc-------ceeeEeec
Confidence 468999999 69999999999999886 89999875
|
| >d1q0qa2 c.2.1.3 (A:1-125,A:275-300) 1-deoxy-D-xylulose-5-phosphate reductoisomerase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: 1-deoxy-D-xylulose-5-phosphate reductoisomerase species: Escherichia coli [TaxId: 562]
Probab=92.05 E-value=0.16 Score=38.59 Aligned_cols=49 Identities=12% Similarity=0.187 Sum_probs=31.2
Q ss_pred CcEEEEEcCCChhHHHHHHHHHhcccCCCCCCeEEEEEecccchhhhhhhHhhh
Q 019990 5 PLRVLVTGAAGQIGYALVPMIARGIMLGPDQPVILHMLDIEPAAEALNGVKMEL 58 (332)
Q Consensus 5 ~~kI~VtGaaG~IGs~l~~~L~~~~~~~~~~~~~i~l~D~~~~~~~~~~~~~dl 58 (332)
|+||+|.|++|.||.+...-+.+.. +..+|..+--..+-+.+..+..++
T Consensus 1 MK~I~IlGsTGSIG~~tL~Vi~~~~-----d~f~v~~Lsa~~N~~~L~~q~~~f 49 (151)
T d1q0qa2 1 MKQLTILGSTGSIGCSTLDVVRHNP-----EHFRVVALVAGKNVTRMVEQCLEF 49 (151)
T ss_dssp CEEEEEETTTSHHHHHHHHHHHHCT-----TTEEEEEEEESSCHHHHHHHHHHH
T ss_pred CCeEEEEcCCcHHHHHHHHHHHhCC-----CCcEEEEEEecCcHHHHHHHHHHH
Confidence 5689999999999999888776642 113555554443334444444443
|
| >d1j6ua1 c.5.1.1 (A:0-88) UDP-N-acetylmuramate-alanine ligase MurC {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: MurCD N-terminal domain superfamily: MurCD N-terminal domain family: MurCD N-terminal domain domain: UDP-N-acetylmuramate-alanine ligase MurC species: Thermotoga maritima [TaxId: 2336]
Probab=91.96 E-value=0.34 Score=33.12 Aligned_cols=70 Identities=13% Similarity=0.112 Sum_probs=45.2
Q ss_pred cEEEEEcCCChhHH-HHHHHHHhcccCCCCCCeEEEEEecccchhhhhhhHhhhhhhccCCccceEEeCCHHHHhCCCcE
Q 019990 6 LRVLVTGAAGQIGY-ALVPMIARGIMLGPDQPVILHMLDIEPAAEALNGVKMELIDAAFPLLKGVVATTDVVEACKDVNI 84 (332)
Q Consensus 6 ~kI~VtGaaG~IGs-~l~~~L~~~~~~~~~~~~~i~l~D~~~~~~~~~~~~~dl~~~~~~~~~~v~~~~~~~~a~~~aDi 84 (332)
|||-++| -|-+|. .||..|++.|+ .|.-.|...+. ....|..... .+.. ....+.++++|+
T Consensus 2 ~~ihfiG-IgG~GMs~LA~~L~~~G~-------~VsGSD~~~~~-----~t~~L~~~Gi----~i~~-gh~~~~i~~~d~ 63 (89)
T d1j6ua1 2 MKIHFVG-IGGIGMSAVALHEFSNGN-------DVYGSNIEETE-----RTAYLRKLGI----PIFV-PHSADNWYDPDL 63 (89)
T ss_dssp CEEEEET-TTSHHHHHHHHHHHHTTC-------EEEEECSSCCH-----HHHHHHHTTC----CEES-SCCTTSCCCCSE
T ss_pred cEEEEEe-ECHHHHHHHHHHHHhCCC-------eEEEEeCCCCh-----hHHHHHHCCC----eEEe-eecccccCCCCE
Confidence 6899999 566665 78888888887 89999986431 1223444321 1211 112344688999
Q ss_pred EEEecCCCC
Q 019990 85 AVMVGGFPR 93 (332)
Q Consensus 85 Vi~~ag~~~ 93 (332)
||.+.+++.
T Consensus 64 vV~SsAI~~ 72 (89)
T d1j6ua1 64 VIKTPAVRD 72 (89)
T ss_dssp EEECTTCCT
T ss_pred EEEecCcCC
Confidence 999887763
|
| >d1gq2a1 c.2.1.7 (A:280-580) Mitochondrial NAD(P)-dependent malic enzyme {Domestic pigeon (Columba livia) [TaxId: 8932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Mitochondrial NAD(P)-dependent malic enzyme species: Domestic pigeon (Columba livia) [TaxId: 8932]
Probab=91.88 E-value=0.13 Score=43.61 Aligned_cols=112 Identities=12% Similarity=0.150 Sum_probs=59.4
Q ss_pred CcEEEEEcCCChhHHHHHHHHHhc----ccCCCCCCeEEEEEecccchhhhhhhHhhhhhhccCCccceEEeCCHHHHhC
Q 019990 5 PLRVLVTGAAGQIGYALVPMIARG----IMLGPDQPVILHMLDIEPAAEALNGVKMELIDAAFPLLKGVVATTDVVEACK 80 (332)
Q Consensus 5 ~~kI~VtGaaG~IGs~l~~~L~~~----~~~~~~~~~~i~l~D~~~~~~~~~~~~~dl~~~~~~~~~~v~~~~~~~~a~~ 80 (332)
..||+|.| +|.-|..++..|... |+...+-...+.++|.+. .+.....|+.+...++..+.....++.+..+
T Consensus 25 d~kiV~~G-AGsAg~gia~~l~~~~~~~G~~~~~a~~~i~l~D~kG---lv~~~R~~l~~~k~~~a~~~~~~~~l~~~i~ 100 (298)
T d1gq2a1 25 DHTVLFQG-AGEAALGIANLIVMAMQKEGVSKEEAIKRIWMVDSKG---LIVKGRASLTPEKEHFAHEHCEMKNLEDIVK 100 (298)
T ss_dssp GCCEEEEC-CSHHHHHHHHHHHHHHHHHTCCHHHHHTTEEEEETTE---ECBTTCSSCCTTGGGGCBSCCCCCCHHHHHH
T ss_pred HcEEEEEC-ccHHHHHHHHHHHHHHHHcCCChhhccceEEEEeCCC---cccCCCcccCHHHHHHHHHhhhhhhhHHHhh
Confidence 35899999 699999998887532 221000012699999764 2222223333221122222222234444443
Q ss_pred --CCcEEEEecCCCCCCCCChhHHHhhhHHHHHHHHHHHHhhcCCCcEEEEEeCChh
Q 019990 81 --DVNIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEKHAAPNCKVLVVANPAN 135 (332)
Q Consensus 81 --~aDiVi~~ag~~~~~~~~~~~~~~~N~~~~~~i~~~i~~~~~~~~~viv~snp~~ 135 (332)
+.+++|-+.+.+.. .+ +++++.+...+ ++.+|+-.|||..
T Consensus 101 ~vkptvliG~s~~~g~--ft------------~evv~~ma~~~-~~PIIFaLSNPt~ 142 (298)
T d1gq2a1 101 DIKPTVLIGVAAIGGA--FT------------QQILQDMAAFN-KRPIIFALSNPTS 142 (298)
T ss_dssp HHCCSEEEECSCCTTC--SC------------HHHHHHHHHHC-SSCEEEECCSSGG
T ss_pred ccChheeEecccccCc--CC------------HHHHHHHHhhC-CCCEEEEccCCCC
Confidence 35676666544321 11 24455566665 5667788999963
|
| >d1xhca2 c.3.1.5 (A:104-225) NADH oxidase /nitrite reductase {Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: NADH oxidase /nitrite reductase species: Pyrococcus furiosus [TaxId: 2261]
Probab=91.83 E-value=0.11 Score=37.85 Aligned_cols=34 Identities=18% Similarity=0.281 Sum_probs=29.2
Q ss_pred CcEEEEEcCCChhHHHHHHHHHhcccCCCCCCeEEEEEeccc
Q 019990 5 PLRVLVTGAAGQIGYALVPMIARGIMLGPDQPVILHMLDIEP 46 (332)
Q Consensus 5 ~~kI~VtGaaG~IGs~l~~~L~~~~~~~~~~~~~i~l~D~~~ 46 (332)
+++|+|+| +|++|.-+|..|...+. ++++++..+
T Consensus 32 ~~~vvIiG-gG~iG~E~A~~l~~~g~-------~Vtlv~~~~ 65 (122)
T d1xhca2 32 SGEAIIIG-GGFIGLELAGNLAEAGY-------HVKLIHRGA 65 (122)
T ss_dssp HSEEEEEE-CSHHHHHHHHHHHHTTC-------EEEEECSSS
T ss_pred CCcEEEEC-CcHHHHHHHHHhhcccc-------eEEEEeccc
Confidence 46899999 69999999999998775 899998753
|
| >d1i8ta1 c.4.1.3 (A:1-244,A:314-367) UDP-galactopyranose mutase, N-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-binding domain superfamily: Nucleotide-binding domain family: UDP-galactopyranose mutase, N-terminal domain domain: UDP-galactopyranose mutase, N-terminal domain species: Escherichia coli [TaxId: 562]
Probab=91.75 E-value=0.065 Score=45.55 Aligned_cols=33 Identities=9% Similarity=0.160 Sum_probs=28.8
Q ss_pred CcEEEEEcCCChhHHHHHHHHHhcccCCCCCCeEEEEEecc
Q 019990 5 PLRVLVTGAAGQIGYALVPMIARGIMLGPDQPVILHMLDIE 45 (332)
Q Consensus 5 ~~kI~VtGaaG~IGs~l~~~L~~~~~~~~~~~~~i~l~D~~ 45 (332)
|.+|+|+| ||..|..+|+.|.+.|. +|.+++.+
T Consensus 1 M~dv~IIG-aG~sGl~~A~~L~~~g~-------~V~iiEk~ 33 (298)
T d1i8ta1 1 MYDYIIVG-SGLFGAVCANELKKLNK-------KVLVIEKR 33 (298)
T ss_dssp CEEEEEEC-CSHHHHHHHHHHGGGTC-------CEEEECSS
T ss_pred CccEEEEC-CcHHHHHHHHHHHhCCC-------cEEEEECC
Confidence 46899999 69999999999988775 79999975
|
| >d1w5fa1 c.32.1.1 (A:22-215) Cell-division protein FtsZ {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Tubulin nucleotide-binding domain-like superfamily: Tubulin nucleotide-binding domain-like family: Tubulin, GTPase domain domain: Cell-division protein FtsZ species: Thermotoga maritima [TaxId: 2336]
Probab=91.74 E-value=0.44 Score=37.58 Aligned_cols=111 Identities=16% Similarity=0.214 Sum_probs=61.1
Q ss_pred cEEEEEcCCChhHHHHHHHHHhcccCCCCCCeEEEEEecccchhhhhhhHhhhh-hhccC----C--ccce--------E
Q 019990 6 LRVLVTGAAGQIGYALVPMIARGIMLGPDQPVILHMLDIEPAAEALNGVKMELI-DAAFP----L--LKGV--------V 70 (332)
Q Consensus 6 ~kI~VtGaaG~IGs~l~~~L~~~~~~~~~~~~~i~l~D~~~~~~~~~~~~~dl~-~~~~~----~--~~~v--------~ 70 (332)
+||.|+| -|.-|.+++.+|.+.++.+ .+...+|.+ .+.+.....+-. +.... . ..+. .
T Consensus 1 ~kI~viG-vGGaG~n~v~~l~~~~~~~----v~~iainTD--~~~L~~~~a~~ki~iG~~~t~G~G~g~~p~~g~~aa~e 73 (194)
T d1w5fa1 1 LKIKVIG-VGGAGNNAINRMIEIGIHG----VEFVAVNTD--LQVLEASNADVKIQIGENITRGLGAGGRPEIGEQAALE 73 (194)
T ss_dssp CCEEEEE-EHHHHHHHHHHHHHHCCTT----EEEEEEESC--HHHHHTCCCSEEEECCTTTTTTSCCTTCHHHHHHHHHH
T ss_pred CeEEEEE-eCchHHHHHHHHHHcCCCc----eEEEEEcCC--HHHHhcCCcceEEecccccCCCcccccCchhhHhHHHH
Confidence 4799999 7999999999998877643 467777753 222221100000 00000 0 0000 0
Q ss_pred EeCCHHHHhCCCcEEEEecCCCCCCCCChhHHHhhhHHHHHHHHHHHHhhcCCCcEEEEEeCChh
Q 019990 71 ATTDVVEACKDVNIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEKHAAPNCKVLVVANPAN 135 (332)
Q Consensus 71 ~~~~~~~a~~~aDiVi~~ag~~~~~~~~~~~~~~~N~~~~~~i~~~i~~~~~~~~~viv~snp~~ 135 (332)
....+.+.+.++|.||++||.....| ....-.+++.+++++ -..+-+++-|..
T Consensus 74 ~~~~I~~~l~~~d~vfi~AGlGGgTG----------tgaapviA~~ake~g--~lvv~ivtlPF~ 126 (194)
T d1w5fa1 74 SEEKIREVLQDTHMVFITAGFGGGTG----------TGASPVIAKIAKEMG--ILTVAIVTTPFY 126 (194)
T ss_dssp THHHHHHHTTTCSEEEEEEETTSSHH----------HHHHHHHHHHHHHTT--CEEEEEEEECCG
T ss_pred HHHHHHHHhcCCCeEEEEEecCCCcc----------cchHHHHHHHHHHcC--CceEEEEeechh
Confidence 11245667889999999998753211 122234556666654 234566677754
|
| >d1pl8a2 c.2.1.1 (A:146-316) Ketose reductase (sorbitol dehydrogenase) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Ketose reductase (sorbitol dehydrogenase) species: Human (Homo sapiens) [TaxId: 9606]
Probab=91.63 E-value=0.73 Score=35.02 Aligned_cols=35 Identities=26% Similarity=0.297 Sum_probs=27.9
Q ss_pred CcEEEEEcCCChhHHHHHHHHHhcccCCCCCCeEEEEEeccc
Q 019990 5 PLRVLVTGAAGQIGYALVPMIARGIMLGPDQPVILHMLDIEP 46 (332)
Q Consensus 5 ~~kI~VtGaaG~IGs~l~~~L~~~~~~~~~~~~~i~l~D~~~ 46 (332)
..+|+|+| +|.+|...+..+...|. ..|...|.++
T Consensus 27 gd~VlI~G-~G~iG~~~~~~a~~~G~------~~Vi~~d~~~ 61 (171)
T d1pl8a2 27 GHKVLVCG-AGPIGMVTLLVAKAMGA------AQVVVTDLSA 61 (171)
T ss_dssp TCEEEEEC-CSHHHHHHHHHHHHTTC------SEEEEEESCH
T ss_pred CCEEEEEC-CCccHHHHHHHHHHcCC------ceEEeccCCH
Confidence 45899999 59999998888877664 2789999864
|
| >d1vm6a3 c.2.1.3 (A:1-96,A:183-214) Dihydrodipicolinate reductase {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Dihydrodipicolinate reductase species: Thermotoga maritima [TaxId: 2336]
Probab=91.59 E-value=0.1 Score=38.51 Aligned_cols=25 Identities=12% Similarity=0.295 Sum_probs=21.3
Q ss_pred cEEEEEcCCChhHHHHHHHHHhccc
Q 019990 6 LRVLVTGAAGQIGYALVPMIARGIM 30 (332)
Q Consensus 6 ~kI~VtGaaG~IGs~l~~~L~~~~~ 30 (332)
|||+|.|++|.+|+.++..+...++
T Consensus 1 mki~i~G~~GrMG~~i~~~~~~~~~ 25 (128)
T d1vm6a3 1 MKYGIVGYSGRMGQEIQKVFSEKGH 25 (128)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTC
T ss_pred CEEEEECCCCHHHHHHHHHHhcCCC
Confidence 5899999999999999887766654
|
| >d1pj3a1 c.2.1.7 (A:280-573) Mitochondrial NAD(P)-dependent malic enzyme {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Mitochondrial NAD(P)-dependent malic enzyme species: Human (Homo sapiens) [TaxId: 9606]
Probab=91.37 E-value=0.21 Score=42.17 Aligned_cols=112 Identities=14% Similarity=0.165 Sum_probs=60.6
Q ss_pred CcEEEEEcCCChhHHHHHHHHHhc----ccCCCCCCeEEEEEecccchhhhhhhHhh-hhhhccCCccc--eEEeCCHHH
Q 019990 5 PLRVLVTGAAGQIGYALVPMIARG----IMLGPDQPVILHMLDIEPAAEALNGVKME-LIDAAFPLLKG--VVATTDVVE 77 (332)
Q Consensus 5 ~~kI~VtGaaG~IGs~l~~~L~~~----~~~~~~~~~~i~l~D~~~~~~~~~~~~~d-l~~~~~~~~~~--v~~~~~~~~ 77 (332)
..||+|.| +|.-|..++..|... |+........+.++|.+. .+.....| +.....++..+ -....++.+
T Consensus 25 d~kiv~~G-AGsAg~gia~ll~~~~~~~g~~~~~a~~~i~lvD~~G---lv~~~r~~~~~~~k~~~a~~~~~~~~~~L~e 100 (294)
T d1pj3a1 25 EHKILFLG-AGEAALGIANLIVMSMVENGLSEQEAQKKIWMFDKYG---LLVKGRKAKIDSYQEPFTHSAPESIPDTFED 100 (294)
T ss_dssp GCCEEEEC-CSHHHHHHHHHHHHHHHHTTCCHHHHHHTEEEEETTE---ECBTTCSSCCCTTTGGGCBCCCSSCCSSHHH
T ss_pred HcEEEEEC-ccHHHHHHHHHHHHHHHhcCCchhhccccEEEEeCCC---CccCCCCcccHHHHHHhhccccccchhHHHH
Confidence 35899999 699999999887543 221000012699999754 12111111 11110111111 111245777
Q ss_pred HhC--CCcEEEEecCCCCCCCCChhHHHhhhHHHHHHHHHHHHhhcCCCcEEEEEeCChh
Q 019990 78 ACK--DVNIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEKHAAPNCKVLVVANPAN 135 (332)
Q Consensus 78 a~~--~aDiVi~~ag~~~~~~~~~~~~~~~N~~~~~~i~~~i~~~~~~~~~viv~snp~~ 135 (332)
+++ +.|++|-+.|.+.. .+ +++++++.+.+ ++.+|+-.|||..
T Consensus 101 ~i~~~kptvliG~S~~~g~--ft------------~evi~~Ma~~~-~~PIIFaLSNPt~ 145 (294)
T d1pj3a1 101 AVNILKPSTIIGVAGAGRL--FT------------PDVIRAMASIN-ERPVIFALSNPTA 145 (294)
T ss_dssp HHHHHCCSEEEECCCSSCC--SC------------HHHHHHHHHHC-SSCEEEECCSSGG
T ss_pred HHHhcCCceEEEecCCCCc--CC------------HHHHHHHHhcC-CCcEEEEccCCCC
Confidence 765 78888876554321 11 34556666665 5667788999963
|
| >d2dw4a2 c.3.1.2 (A:274-654,A:764-831) Lysine-specific histone demethylase 1, LSD1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Lysine-specific histone demethylase 1, LSD1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=91.08 E-value=0.13 Score=43.10 Aligned_cols=35 Identities=23% Similarity=0.305 Sum_probs=30.3
Q ss_pred CCCcEEEEEcCCChhHHHHHHHHHhcccCCCCCCeEEEEEecc
Q 019990 3 KNPLRVLVTGAAGQIGYALVPMIARGIMLGPDQPVILHMLDIE 45 (332)
Q Consensus 3 ~~~~kI~VtGaaG~IGs~l~~~L~~~~~~~~~~~~~i~l~D~~ 45 (332)
++..||+|+| +|.-|-..|..|.+.|+ +|.++..+
T Consensus 3 ~~~~kViVIG-aG~aGL~aA~~L~~~G~-------~V~VlEa~ 37 (449)
T d2dw4a2 3 KKTGKVIIIG-SGVSGLAAARQLQSFGM-------DVTLLEAR 37 (449)
T ss_dssp SCCCEEEEEC-CBHHHHHHHHHHHHTTC-------EEEEECSS
T ss_pred CCCCcEEEEC-CCHHHHHHHHHHHhCCC-------CEEEEeCC
Confidence 4567899999 69999999999999886 89999864
|
| >d1h6da1 c.2.1.3 (A:51-212,A:375-433) Glucose-fructose oxidoreductase, N-terminal domain {Zymomonas mobilis [TaxId: 542]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Glucose-fructose oxidoreductase, N-terminal domain species: Zymomonas mobilis [TaxId: 542]
Probab=91.04 E-value=0.26 Score=39.69 Aligned_cols=72 Identities=11% Similarity=0.185 Sum_probs=40.0
Q ss_pred CCcEEEEEcCCChhHH-HHHHHHHhcccCCCCCCeEEE-EEecccchhhhhhhHhhhhhhccCCccceEEeCCHHHHhC-
Q 019990 4 NPLRVLVTGAAGQIGY-ALVPMIARGIMLGPDQPVILH-MLDIEPAAEALNGVKMELIDAAFPLLKGVVATTDVVEACK- 80 (332)
Q Consensus 4 ~~~kI~VtGaaG~IGs-~l~~~L~~~~~~~~~~~~~i~-l~D~~~~~~~~~~~~~dl~~~~~~~~~~v~~~~~~~~a~~- 80 (332)
++.||+|+| +|.+|. +++..+..... .+|+ ++|++. +++......+ ..+ ...+...+++.+.++
T Consensus 32 ~~iriaiIG-~G~~~~~~~~~~~~~~~~------~~ivav~d~~~--~~a~~~~~~~---~i~-~~~~~~~~d~~ell~~ 98 (221)
T d1h6da1 32 RRFGYAIVG-LGKYALNQILPGFAGCQH------SRIEALVSGNA--EKAKIVAAEY---GVD-PRKIYDYSNFDKIAKD 98 (221)
T ss_dssp CCEEEEEEC-CSHHHHHTHHHHTTTCSS------EEEEEEECSCH--HHHHHHHHHT---TCC-GGGEECSSSGGGGGGC
T ss_pred CCEEEEEEc-CcHHHHHHHHHHHHhCCC------ceEEEEecCCH--HHHHHHHHhh---ccc-cccccccCchhhhccc
Confidence 456999999 799996 55555544321 2554 788753 2333222211 010 122333456666664
Q ss_pred -CCcEEEEe
Q 019990 81 -DVNIAVMV 88 (332)
Q Consensus 81 -~aDiVi~~ 88 (332)
+.|+|+++
T Consensus 99 ~~iD~V~I~ 107 (221)
T d1h6da1 99 PKIDAVYII 107 (221)
T ss_dssp TTCCEEEEC
T ss_pred ccceeeeec
Confidence 57889886
|
| >d1kjqa2 c.30.1.1 (A:2-112) Glycinamide ribonucleotide transformylase PurT, N-domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PreATP-grasp domain superfamily: PreATP-grasp domain family: BC N-terminal domain-like domain: Glycinamide ribonucleotide transformylase PurT, N-domain species: Escherichia coli [TaxId: 562]
Probab=91.01 E-value=0.21 Score=35.79 Aligned_cols=35 Identities=20% Similarity=0.237 Sum_probs=29.8
Q ss_pred CCcEEEEEcCCChhHHHHHHHHHhcccCCCCCCeEEEEEeccc
Q 019990 4 NPLRVLVTGAAGQIGYALVPMIARGIMLGPDQPVILHMLDIEP 46 (332)
Q Consensus 4 ~~~kI~VtGaaG~IGs~l~~~L~~~~~~~~~~~~~i~l~D~~~ 46 (332)
...||+|+| +|..|+-++....+.|+ +++++|.+.
T Consensus 10 ~~~kigIlG-gGQL~rMla~aA~~lG~-------~v~v~d~~~ 44 (111)
T d1kjqa2 10 AATRVMLLG-SGELGKEVAIECQRLGV-------EVIAVDRYA 44 (111)
T ss_dssp TCCEEEEES-CSHHHHHHHHHHHTTTC-------EEEEEESST
T ss_pred CCCEEEEEe-CCHHHHHHHHHHHHCCC-------EEEEEcCCC
Confidence 357999999 69999999998888776 899999764
|
| >d1mo9a2 c.3.1.5 (A:193-313) NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase {Xanthobacter sp., py2 [TaxId: 35809]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase species: Xanthobacter sp., py2 [TaxId: 35809]
Probab=90.91 E-value=0.18 Score=36.29 Aligned_cols=35 Identities=14% Similarity=-0.033 Sum_probs=29.2
Q ss_pred CCcEEEEEcCCChhHHHHHHHHHhcccCCCCCCeEEEEEeccc
Q 019990 4 NPLRVLVTGAAGQIGYALVPMIARGIMLGPDQPVILHMLDIEP 46 (332)
Q Consensus 4 ~~~kI~VtGaaG~IGs~l~~~L~~~~~~~~~~~~~i~l~D~~~ 46 (332)
++++|+|+| +|++|.-+|..|...+. ++.+++..+
T Consensus 21 ~~~~vvVvG-gG~ig~E~A~~l~~~g~-------~vt~i~~~~ 55 (121)
T d1mo9a2 21 PGSTVVVVG-GSKTAVEYGCFFNATGR-------RTVMLVRTE 55 (121)
T ss_dssp CCSEEEEEC-CSHHHHHHHHHHHHTTC-------EEEEECSSC
T ss_pred CCCEEEEEC-CCHHHHHHHHHHHhcch-------hheEeeccc
Confidence 358999999 69999999999987764 888888753
|
| >d1dxla2 c.3.1.5 (A:153-275) Dihydrolipoamide dehydrogenase {Garden pea (Pisum sativum) [TaxId: 3888]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Dihydrolipoamide dehydrogenase species: Garden pea (Pisum sativum) [TaxId: 3888]
Probab=90.87 E-value=0.14 Score=37.31 Aligned_cols=36 Identities=22% Similarity=0.356 Sum_probs=30.6
Q ss_pred CCCcEEEEEcCCChhHHHHHHHHHhcccCCCCCCeEEEEEeccc
Q 019990 3 KNPLRVLVTGAAGQIGYALVPMIARGIMLGPDQPVILHMLDIEP 46 (332)
Q Consensus 3 ~~~~kI~VtGaaG~IGs~l~~~L~~~~~~~~~~~~~i~l~D~~~ 46 (332)
..|++++|+| +|+||.-+|..|...|. +|+++...+
T Consensus 23 ~~p~~~viiG-~G~iglE~A~~~~~~G~-------~Vtvi~~~~ 58 (123)
T d1dxla2 23 EIPKKLVVIG-AGYIGLEMGSVWGRIGS-------EVTVVEFAS 58 (123)
T ss_dssp SCCSEEEESC-CSHHHHHHHHHHHHHTC-------EEEEECSSS
T ss_pred ccCCeEEEEc-cchHHHHHHHHHHhcCC-------eEEEEEEcc
Confidence 3478999999 69999999999998875 899988653
|
| >d1iz0a2 c.2.1.1 (A:99-269) Quinone oxidoreductase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Quinone oxidoreductase species: Thermus thermophilus [TaxId: 274]
Probab=90.55 E-value=0.12 Score=40.04 Aligned_cols=35 Identities=26% Similarity=0.193 Sum_probs=27.9
Q ss_pred CCcEEEEEcCCChhHHHHHHHHHhcccCCCCCCeEEEEEecc
Q 019990 4 NPLRVLVTGAAGQIGYALVPMIARGIMLGPDQPVILHMLDIE 45 (332)
Q Consensus 4 ~~~kI~VtGaaG~IGs~l~~~L~~~~~~~~~~~~~i~l~D~~ 45 (332)
+..+|+|+||+|.+|+..+..++..|. +++..+.+
T Consensus 27 ~g~~VlI~ga~G~vG~~aiqlak~~G~-------~vi~~~~~ 61 (171)
T d1iz0a2 27 PGEKVLVQAAAGALGTAAVQVARAMGL-------RVLAAASR 61 (171)
T ss_dssp TTCEEEESSTTBHHHHHHHHHHHHTTC-------EEEEEESS
T ss_pred CCCEEEEEeccccchhhhhhhhccccc-------cccccccc
Confidence 346899999999999999888877775 67777754
|
| >d1up7a2 d.162.1.2 (A:163-415) 6-phospho-beta-glucosidase {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: LDH C-terminal domain-like superfamily: LDH C-terminal domain-like family: AglA-like glucosidase domain: 6-phospho-beta-glucosidase species: Thermotoga maritima [TaxId: 2336]
Probab=90.37 E-value=3.8 Score=33.26 Aligned_cols=74 Identities=18% Similarity=0.181 Sum_probs=47.4
Q ss_pred HHHHHHHHHcCCCCCcEEEEEEeecCCC-CCCCCeEEEEeEEEe-CCeEEEecCCCCCHHHHHHHHHHHHHHHHHHHHH
Q 019990 251 ACDHIRDWVLGTPKGTWVSMGVYSDGSY-GIPEGLIYSFPVTCE-KGEWSIVKGLKVDEFSRAKMDATAEELAEEKTLA 327 (332)
Q Consensus 251 ~~~~i~~~~~~~~~~~i~~~~v~~~g~y-g~~~~~~~s~Pv~~~-~G~~~~~~~~~l~~~E~~~l~~s~~~i~~~~~~~ 327 (332)
.+.+|.+ +.+ +++.++.+.|.-+|.- ++|.+.++=+||.++ +|+.-+- --+|.+.-..+++.-...-+-.++++
T Consensus 136 a~~ii~a-i~~-~~~~~~~vNv~N~G~I~~Lp~d~vVEVp~~V~~~Gi~P~~-~g~lP~~~~~Li~~~~~~e~L~veA~ 211 (253)
T d1up7a2 136 AAHLIRD-LET-DEGKIHIVNTRNNGSIENLPDDYVLEIPCYVRSGRVHTLS-QGKGDHFALSFIHAVKMYERLTIEAY 211 (253)
T ss_dssp HHHHHHH-HHS-SSCEEEEEEEECTTSSTTSCTTCEEEEEEEEETTEEEEBC-CCCCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHH-HHc-CCCcEEEEeCCCcCcCCCCChhhheEEEEEecCCcccccc-cCCCcHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555 554 4577888888877753 578999999999999 7765443 24777776666554433333334443
|
| >d1vlva2 c.78.1.1 (A:153-313) Ornithine transcarbamoylase {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: ATC-like superfamily: Aspartate/ornithine carbamoyltransferase family: Aspartate/ornithine carbamoyltransferase domain: Ornithine transcarbamoylase species: Thermotoga maritima [TaxId: 2336]
Probab=90.34 E-value=0.55 Score=35.59 Aligned_cols=78 Identities=14% Similarity=0.047 Sum_probs=46.8
Q ss_pred CCcEEEEEc-CCChhHHHHHHHHHhcccCCCCCCeEEEEEecccchhhhhhhHhhhhhhccCCccceEEeCCHHHHhCCC
Q 019990 4 NPLRVLVTG-AAGQIGYALVPMIARGIMLGPDQPVILHMLDIEPAAEALNGVKMELIDAAFPLLKGVVATTDVVEACKDV 82 (332)
Q Consensus 4 ~~~kI~VtG-aaG~IGs~l~~~L~~~~~~~~~~~~~i~l~D~~~~~~~~~~~~~dl~~~~~~~~~~v~~~~~~~~a~~~a 82 (332)
+..||+++| +...|-.+++..+..-|. +++++-..+.. ...................+....++.++++++
T Consensus 2 ~g~ki~~vGD~~nnV~~Sli~~~~~~g~-------~i~~~~P~~~~-~~~~~~~~~~~~~~~~~~~i~~~~d~~~ai~~a 73 (161)
T d1vlva2 2 KGVKVVFMGDTRNNVATSLMIACAKMGM-------NFVACGPEELK-PRSDVFKRCQEIVKETDGSVSFTSNLEEALAGA 73 (161)
T ss_dssp TTCEEEEESCTTSHHHHHHHHHHHHTTC-------EEEEESCGGGC-CCHHHHHHHHHHHHHHCCEEEEESCHHHHHTTC
T ss_pred CCCEEEEEcCCccHHHHHHHHHHHHcCC-------EEEEecchhhh-hhhhHHHHHHHHHhhcCCceEEEecHHHhhhhh
Confidence 467999999 435677777777766554 78877653210 001111111111111124567778999999999
Q ss_pred cEEEEec
Q 019990 83 NIAVMVG 89 (332)
Q Consensus 83 DiVi~~a 89 (332)
|+|....
T Consensus 74 Dviyt~~ 80 (161)
T d1vlva2 74 DVVYTDV 80 (161)
T ss_dssp SEEEECC
T ss_pred hheeccc
Confidence 9998753
|
| >d1duvg2 c.78.1.1 (G:151-333) Ornithine transcarbamoylase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: ATC-like superfamily: Aspartate/ornithine carbamoyltransferase family: Aspartate/ornithine carbamoyltransferase domain: Ornithine transcarbamoylase species: Escherichia coli [TaxId: 562]
Probab=90.30 E-value=0.91 Score=35.15 Aligned_cols=78 Identities=14% Similarity=0.112 Sum_probs=45.8
Q ss_pred CCcEEEEEc-CCChhHHHHHHHHHhcccCCCCCCeEEEEEecccchhhhhhhHhhhhhhccCCccceEEeCCHHHHhCCC
Q 019990 4 NPLRVLVTG-AAGQIGYALVPMIARGIMLGPDQPVILHMLDIEPAAEALNGVKMELIDAAFPLLKGVVATTDVVEACKDV 82 (332)
Q Consensus 4 ~~~kI~VtG-aaG~IGs~l~~~L~~~~~~~~~~~~~i~l~D~~~~~~~~~~~~~dl~~~~~~~~~~v~~~~~~~~a~~~a 82 (332)
+..||+++| +...+..+++..+..-|. +++++-..+.. .-.................+..+.+..++++++
T Consensus 4 ~~l~i~~vGD~~nnv~~Sli~~~~~~g~-------~l~~~~P~~~~-~~~~~~~~~~~~~~~~g~~~~~~~d~~~a~~~a 75 (183)
T d1duvg2 4 NEMTLVYAGDARNNMGNSMLEAAALTGL-------DLRLVAPQACW-PEAALVTECRALAQQNGGNITLTEDVAKGVEGA 75 (183)
T ss_dssp GGCEEEEESCTTSHHHHHHHHHHHHHCC-------EEEEECCGGGC-CCHHHHHHHHHHHHHTTCEEEEESCHHHHHTTC
T ss_pred CCCEEEEEcCCccHHHHHHHHHHHHcCC-------EEEEEechHhh-hhHHHHHHHHHHHHhcCCceEEEechhhccccC
Confidence 467999999 323577777766665554 88888753211 001111111111111234566778899999999
Q ss_pred cEEEEec
Q 019990 83 NIAVMVG 89 (332)
Q Consensus 83 DiVi~~a 89 (332)
|+|...-
T Consensus 76 Dvvyt~~ 82 (183)
T d1duvg2 76 DFIYTDV 82 (183)
T ss_dssp SEEEECC
T ss_pred CEEEEEe
Confidence 9988753
|
| >d1kifa1 c.4.1.2 (A:1-194,A:288-339) D-aminoacid oxidase, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-binding domain superfamily: Nucleotide-binding domain family: D-aminoacid oxidase, N-terminal domain domain: D-aminoacid oxidase, N-terminal domain species: Pig (Sus scrofa) [TaxId: 9823]
Probab=90.17 E-value=0.08 Score=42.68 Aligned_cols=24 Identities=38% Similarity=0.521 Sum_probs=21.7
Q ss_pred cEEEEEcCCChhHHHHHHHHHhccc
Q 019990 6 LRVLVTGAAGQIGYALVPMIARGIM 30 (332)
Q Consensus 6 ~kI~VtGaaG~IGs~l~~~L~~~~~ 30 (332)
|||+|+| +|-+|.+.|..|.+.+.
T Consensus 1 mkV~VIG-aGi~GlstA~~L~~~G~ 24 (246)
T d1kifa1 1 MRVVVIG-AGVIGLSTALCIHERYH 24 (246)
T ss_dssp CEEEEEC-CSHHHHHHHHHHHHHHT
T ss_pred CEEEEEC-chHHHHHHHHHHHHCCC
Confidence 6899999 69999999999998774
|
| >d1yovb1 c.111.1.2 (B:12-437) UBA3 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Activating enzymes of the ubiquitin-like proteins superfamily: Activating enzymes of the ubiquitin-like proteins family: Ubiquitin activating enzymes (UBA) domain: UBA3 species: Human (Homo sapiens) [TaxId: 9606]
Probab=90.14 E-value=0.097 Score=46.96 Aligned_cols=35 Identities=31% Similarity=0.561 Sum_probs=29.6
Q ss_pred CcEEEEEcCCChhHHHHHHHHHhcccCCCCCCeEEEEEeccc
Q 019990 5 PLRVLVTGAAGQIGYALVPMIARGIMLGPDQPVILHMLDIEP 46 (332)
Q Consensus 5 ~~kI~VtGaaG~IGs~l~~~L~~~~~~~~~~~~~i~l~D~~~ 46 (332)
..||+|+| +|.+|+.++..|+..|+ + +++++|.+.
T Consensus 37 ~~kVlvvG-~GglG~ei~k~L~~~Gv-g-----~i~lvD~D~ 71 (426)
T d1yovb1 37 TCKVLVIG-AGGLGCELLKNLALSGF-R-----QIHVIDMDT 71 (426)
T ss_dssp HCCEEEEC-SSTTHHHHHHHHHTTTC-C-----CEEEECCCB
T ss_pred cCeEEEEC-CCHHHHHHHHHHHHcCC-C-----eEEEEECCC
Confidence 36899999 69999999999999886 2 799999653
|
| >d1aoga2 c.3.1.5 (A:170-286) Trypanothione reductase {Trypanosoma cruzi [TaxId: 5693]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Trypanothione reductase species: Trypanosoma cruzi [TaxId: 5693]
Probab=89.92 E-value=0.32 Score=34.85 Aligned_cols=38 Identities=18% Similarity=0.146 Sum_probs=28.5
Q ss_pred CCCcEEEEEcCCChhHHHHHHHHHhcccCCCCCCeEEEEEecc
Q 019990 3 KNPLRVLVTGAAGQIGYALVPMIARGIMLGPDQPVILHMLDIE 45 (332)
Q Consensus 3 ~~~~kI~VtGaaG~IGs~l~~~L~~~~~~~~~~~~~i~l~D~~ 45 (332)
..+.+|+|+| +|++|.-+|..|...+..+ .++.+++..
T Consensus 18 ~~p~~v~ivG-gG~ig~E~A~~l~~l~~~~----~~Vtli~~~ 55 (117)
T d1aoga2 18 EPPRRVLTVG-GGFISVEFAGIFNAYKPKD----GQVTLCYRG 55 (117)
T ss_dssp SCCSEEEEEC-SSHHHHHHHHHHHHHCCTT----CEEEEEESS
T ss_pred hcCCeEEEEC-CcHHHHHHHHHhhhcccCC----cEEEEEecc
Confidence 3478999999 5999999998776544322 278888864
|
| >d2vapa1 c.32.1.1 (A:23-231) Cell-division protein FtsZ {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Tubulin nucleotide-binding domain-like superfamily: Tubulin nucleotide-binding domain-like family: Tubulin, GTPase domain domain: Cell-division protein FtsZ species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=89.70 E-value=0.96 Score=35.98 Aligned_cols=113 Identities=15% Similarity=0.137 Sum_probs=61.9
Q ss_pred CCcEEEEEcCCChhHHHHHHHHHhcccCCCCCCeEEEEEecccchhhhhhhHhhhh-hhccCCc------cce-------
Q 019990 4 NPLRVLVTGAAGQIGYALVPMIARGIMLGPDQPVILHMLDIEPAAEALNGVKMELI-DAAFPLL------KGV------- 69 (332)
Q Consensus 4 ~~~kI~VtGaaG~IGs~l~~~L~~~~~~~~~~~~~i~l~D~~~~~~~~~~~~~dl~-~~~~~~~------~~v------- 69 (332)
...||.|+| .|.-|.+++..|.+.++.+ .+...+|.+. +.+.....+-. +...... .+.
T Consensus 14 ~~~ki~ViG-vGGaG~n~v~~l~~~~~~~----v~~iainTD~--~~L~~~~~~~ki~ig~~~t~g~Gag~~p~~g~~aa 86 (209)
T d2vapa1 14 TKAKITVVG-CGGAGNNTITRLKMEGIEG----AKTVAINTDA--QQLIRTKADKKILIGKKLTRGLGAGGNPKIGEEAA 86 (209)
T ss_dssp TCCCEEEEE-EHHHHHHHHHHHHHHTCTT----EEEEEEESBH--HHHHTSCCSEEEECCTTTTTTBCCTTCHHHHHHHH
T ss_pred cCCcEEEEE-eCChHHHHHHHHHHcCCCc----eEEEEEeCCH--HHHhcCCcchhcccccccccccccccchHHHHHHH
Confidence 456899999 7999999999998877533 3677777632 22221100000 0000000 000
Q ss_pred -EEeCCHHHHhCCCcEEEEecCCCCCCCCChhHHHhhhHHHHHHHHHHHHhhcCCCcEEEEEeCChh
Q 019990 70 -VATTDVVEACKDVNIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEKHAAPNCKVLVVANPAN 135 (332)
Q Consensus 70 -~~~~~~~~a~~~aDiVi~~ag~~~~~~~~~~~~~~~N~~~~~~i~~~i~~~~~~~~~viv~snp~~ 135 (332)
.....+.+.+.++|.||++||.... +- ....--+++.+++.+ ...+-+++-|..
T Consensus 87 ~e~~~~I~~~l~~~d~vfi~AGlGGG---TG-------sgaapvia~~ake~g--~lvv~ivtlPF~ 141 (209)
T d2vapa1 87 KESAEEIKAAIQDSDMVFITCGLGGG---TG-------TGSAPVVAEISKKIG--ALTVAVVTLPFV 141 (209)
T ss_dssp HHTHHHHHHHHTTCSEEEEEEETTSS---HH-------HHHHHHHHHHHHHTT--CEEEEEEEECCG
T ss_pred HHHHHHHHHhccCCCEEEEEEeCCCC---cc-------ccHHHHHHHHHHHcC--CcEEEEEecchh
Confidence 0012456678999999999987532 11 111223555566654 234566676754
|
| >d1feca2 c.3.1.5 (A:170-286) Trypanothione reductase {Crithidia fasciculata [TaxId: 5656]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Trypanothione reductase species: Crithidia fasciculata [TaxId: 5656]
Probab=89.67 E-value=0.34 Score=34.60 Aligned_cols=38 Identities=18% Similarity=0.214 Sum_probs=28.1
Q ss_pred CCCcEEEEEcCCChhHHHHHHHHHhcccCCCCCCeEEEEEecc
Q 019990 3 KNPLRVLVTGAAGQIGYALVPMIARGIMLGPDQPVILHMLDIE 45 (332)
Q Consensus 3 ~~~~kI~VtGaaG~IGs~l~~~L~~~~~~~~~~~~~i~l~D~~ 45 (332)
..|++|+|+| +|++|.-+|..|.+....+ .+|.++...
T Consensus 16 ~~p~~v~IiG-gG~ig~E~A~~l~~~~~~g----~~Vtli~~~ 53 (117)
T d1feca2 16 EAPKRALCVG-GGYISIEFAGIFNAYKARG----GQVDLAYRG 53 (117)
T ss_dssp SCCSEEEEEC-SSHHHHHHHHHHHHHSCTT----CEEEEEESS
T ss_pred ccCCeEEEEC-CChHHHHHHHHhHhhcccc----cccceeccc
Confidence 3478999999 6999999998775532222 278888864
|
| >d2fy8a1 c.2.1.9 (A:116-244) Potassium channel-related protein MthK {Archaeon Methanothermobacter thermautotrophicus [TaxId: 145262]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Potassium channel NAD-binding domain domain: Potassium channel-related protein MthK species: Archaeon Methanothermobacter thermautotrophicus [TaxId: 145262]
Probab=89.56 E-value=0.34 Score=35.27 Aligned_cols=95 Identities=8% Similarity=0.131 Sum_probs=52.9
Q ss_pred cEEEEEcCCChhHHHHHHHHHhcccCCCCCCeEEEEEecccchhhhhhhHhhhhhhccC-CccceEEeCCHHHH-hCCCc
Q 019990 6 LRVLVTGAAGQIGYALVPMIARGIMLGPDQPVILHMLDIEPAAEALNGVKMELIDAAFP-LLKGVVATTDVVEA-CKDVN 83 (332)
Q Consensus 6 ~kI~VtGaaG~IGs~l~~~L~~~~~~~~~~~~~i~l~D~~~~~~~~~~~~~dl~~~~~~-~~~~v~~~~~~~~a-~~~aD 83 (332)
++|.|+| .|.+|+.++..|... ++.++|.++. ... .+...... ..++.+....+.++ +.+|+
T Consensus 1 kHivI~G-~g~~g~~l~~~L~~~---------~i~vi~~d~~--~~~----~~~~~~~~~i~Gd~~~~~~L~~a~i~~A~ 64 (129)
T d2fy8a1 1 RHVVICG-WSESTLECLRELRGS---------EVFVLAEDEN--VRK----KVLRSGANFVHGDPTRVSDLEKANVRGAR 64 (129)
T ss_dssp CCEEEES-CCHHHHHHHHTSCGG---------GEEEEESCTT--HHH----HHHHTTCEEEESCTTSHHHHHHTTCTTCS
T ss_pred CEEEEEC-CCHHHHHHHHHHcCC---------CCEEEEcchH--HHH----HHHhcCccccccccCCHHHHHHhhhhcCc
Confidence 3688999 799999999988432 4677777542 222 12221111 12333333334333 57899
Q ss_pred EEEEecCCCCCCCCChhHHHhhhHHHHHHHHHHHHhhcCCCcEEEEEeC
Q 019990 84 IAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEKHAAPNCKVLVVAN 132 (332)
Q Consensus 84 iVi~~ag~~~~~~~~~~~~~~~N~~~~~~i~~~i~~~~~~~~~viv~sn 132 (332)
.++.+.. .+ ..|. .++..+++.. |+.+++...+
T Consensus 65 ~vi~~~~------~d-----~~n~----~~~~~~r~~~-~~~~iia~~~ 97 (129)
T d2fy8a1 65 AVIVNLE------SD-----SETI----HCILGIRKID-ESVRIIAEAE 97 (129)
T ss_dssp EEEECCS------SH-----HHHH----HHHHHHHHHC-SSSCEEEECS
T ss_pred EEEEecc------ch-----hhhH----HHHHHHHHHC-CCceEEEEEc
Confidence 9988631 11 2233 2345566765 7777666665
|
| >d2bcgg1 c.3.1.3 (G:5-301) Guanine nucleotide dissociation inhibitor, GDI {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: GDI-like N domain domain: Guanine nucleotide dissociation inhibitor, GDI species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=89.34 E-value=0.17 Score=40.13 Aligned_cols=33 Identities=18% Similarity=0.208 Sum_probs=28.6
Q ss_pred cEEEEEcCCChhHHHHHHHHHhcccCCCCCCeEEEEEeccc
Q 019990 6 LRVLVTGAAGQIGYALVPMIARGIMLGPDQPVILHMLDIEP 46 (332)
Q Consensus 6 ~kI~VtGaaG~IGs~l~~~L~~~~~~~~~~~~~i~l~D~~~ 46 (332)
--|+|+| +|..|...|..|.+.|+ +|.+++.+.
T Consensus 6 yDviViG-aG~~Gl~~A~~La~~G~-------~V~vlE~~~ 38 (297)
T d2bcgg1 6 YDVIVLG-TGITECILSGLLSVDGK-------KVLHIDKQD 38 (297)
T ss_dssp CSEEEEC-CSHHHHHHHHHHHHTTC-------CEEEECSSS
T ss_pred CCEEEEC-cCHHHHHHHHHHHHCCC-------CEEEEcCCC
Confidence 3489999 69999999999999886 899999753
|
| >d1pj5a2 c.3.1.2 (A:4-219,A:339-427) N,N-dimethylglycine oxidase {Arthrobacter globiformis [TaxId: 1665]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: N,N-dimethylglycine oxidase species: Arthrobacter globiformis [TaxId: 1665]
Probab=89.15 E-value=0.15 Score=42.72 Aligned_cols=32 Identities=25% Similarity=0.376 Sum_probs=27.6
Q ss_pred EEEEEcCCChhHHHHHHHHHhcccCCCCCCeEEEEEecc
Q 019990 7 RVLVTGAAGQIGYALVPMIARGIMLGPDQPVILHMLDIE 45 (332)
Q Consensus 7 kI~VtGaaG~IGs~l~~~L~~~~~~~~~~~~~i~l~D~~ 45 (332)
+|+|+| +|-+|.++|+.|.+.|. .+|.|+|..
T Consensus 3 dViIIG-aGi~G~s~A~~La~~G~------~~V~liE~~ 34 (305)
T d1pj5a2 3 RIVIIG-AGIVGTNLADELVTRGW------NNITVLDQG 34 (305)
T ss_dssp CEEEEC-CSHHHHHHHHHHHHTTC------CCEEEECSS
T ss_pred CEEEEC-cCHHHHHHHHHHHHcCC------CcEEEEeCC
Confidence 799999 69999999999998774 169999975
|
| >d1b5qa1 c.3.1.2 (A:5-293,A:406-463) Polyamine oxidase {Maize (Zea mays) [TaxId: 4577]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Polyamine oxidase species: Maize (Zea mays) [TaxId: 4577]
Probab=89.01 E-value=0.15 Score=40.75 Aligned_cols=32 Identities=28% Similarity=0.405 Sum_probs=27.6
Q ss_pred EEEEEcCCChhHHHHHHHHHhcccCCCCCCeEEEEEecc
Q 019990 7 RVLVTGAAGQIGYALVPMIARGIMLGPDQPVILHMLDIE 45 (332)
Q Consensus 7 kI~VtGaaG~IGs~l~~~L~~~~~~~~~~~~~i~l~D~~ 45 (332)
||+|+| +|..|.+.|..|.+.|+. +|.+++..
T Consensus 2 ~V~IIG-aG~aGL~aA~~L~~~G~~------~V~vlE~~ 33 (347)
T d1b5qa1 2 RVIVVG-AGMSGISAAKRLSEAGIT------DLLILEAT 33 (347)
T ss_dssp CEEEEC-CBHHHHHHHHHHHHTTCC------CEEEECSS
T ss_pred CEEEEC-CcHHHHHHHHHHHhCCCC------cEEEEECC
Confidence 799999 699999999999988851 58999874
|
| >d1pvva2 c.78.1.1 (A:151-313) Ornithine transcarbamoylase {Archaeon Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: ATC-like superfamily: Aspartate/ornithine carbamoyltransferase family: Aspartate/ornithine carbamoyltransferase domain: Ornithine transcarbamoylase species: Archaeon Pyrococcus furiosus [TaxId: 2261]
Probab=88.91 E-value=0.98 Score=34.25 Aligned_cols=78 Identities=13% Similarity=0.003 Sum_probs=46.7
Q ss_pred CCCcEEEEEcCCChhHHHHHHHHHhcccCCCCCCeEEEEEecccchhhhhhhHhhh-hhhccCCccceEEeCCHHHHhCC
Q 019990 3 KNPLRVLVTGAAGQIGYALVPMIARGIMLGPDQPVILHMLDIEPAAEALNGVKMEL-IDAAFPLLKGVVATTDVVEACKD 81 (332)
Q Consensus 3 ~~~~kI~VtGaaG~IGs~l~~~L~~~~~~~~~~~~~i~l~D~~~~~~~~~~~~~dl-~~~~~~~~~~v~~~~~~~~a~~~ 81 (332)
.+..||+++|-...|..+++..|..-|. ++.++-..... ......+. ..........+....+..+++++
T Consensus 2 l~gl~Ia~VGD~~nv~~Sli~~l~~~g~-------~v~~~~P~~~~--~~~~~~~~~~~~~~~~~~~~~~~~d~~ea~~~ 72 (163)
T d1pvva2 2 IKGVKVVYVGDGNNVAHSLMIAGTKLGA-------DVVVATPEGYE--PDEKVIKWAEQNAAESGGSFELLHDPVKAVKD 72 (163)
T ss_dssp CTTCEEEEESCCCHHHHHHHHHHHHTTC-------EEEEECCTTCC--CCHHHHHHHHHHHHHHTCEEEEESCHHHHTTT
T ss_pred cCCCEEEEECCCcHHHHHHHHHHHHcCC-------eEEEecccccC--CChHHHHHHHHhhhcccceEEEecCHHHHhhh
Confidence 4578999999866777777776666554 78887653210 11111111 11000112356667889999999
Q ss_pred CcEEEEec
Q 019990 82 VNIAVMVG 89 (332)
Q Consensus 82 aDiVi~~a 89 (332)
+|+|..+-
T Consensus 73 adviy~~~ 80 (163)
T d1pvva2 73 ADVIYTDV 80 (163)
T ss_dssp CSEEEECC
T ss_pred ccEEeecc
Confidence 99988753
|
| >d2gf3a1 c.3.1.2 (A:1-217,A:322-385) Sarcosine oxidase {Bacillus sp., strain b0618 [TaxId: 1409]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Sarcosine oxidase species: Bacillus sp., strain b0618 [TaxId: 1409]
Probab=88.45 E-value=0.19 Score=41.50 Aligned_cols=31 Identities=29% Similarity=0.336 Sum_probs=27.5
Q ss_pred EEEEEcCCChhHHHHHHHHHhcccCCCCCCeEEEEEecc
Q 019990 7 RVLVTGAAGQIGYALVPMIARGIMLGPDQPVILHMLDIE 45 (332)
Q Consensus 7 kI~VtGaaG~IGs~l~~~L~~~~~~~~~~~~~i~l~D~~ 45 (332)
-|+|+| +|.+|.++|+.|.+.|. +|+++|..
T Consensus 5 DvvIIG-aGi~Gls~A~~La~~G~-------~V~viE~~ 35 (281)
T d2gf3a1 5 DVIVVG-AGSMGMAAGYQLAKQGV-------KTLLVDAF 35 (281)
T ss_dssp EEEEEC-CSHHHHHHHHHHHHTTC-------CEEEECSS
T ss_pred CEEEEC-cCHHHHHHHHHHHHCCC-------cEEEEeCC
Confidence 489999 69999999999999886 79999974
|
| >d1uufa2 c.2.1.1 (A:145-312) Hypothetical protein YahK {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Hypothetical protein YahK species: Escherichia coli [TaxId: 562]
Probab=88.24 E-value=0.39 Score=36.64 Aligned_cols=35 Identities=14% Similarity=0.063 Sum_probs=26.5
Q ss_pred CCcEEEEEcCCChhHHHHHHHHHhcccCCCCCCeEEEEEeccc
Q 019990 4 NPLRVLVTGAAGQIGYALVPMIARGIMLGPDQPVILHMLDIEP 46 (332)
Q Consensus 4 ~~~kI~VtGaaG~IGs~l~~~L~~~~~~~~~~~~~i~l~D~~~ 46 (332)
+..+|+|+| +|.||...+..+...|. +++.+|.+.
T Consensus 30 ~G~~VlI~G-aG~vG~~a~qlak~~Ga-------~~i~~~~~~ 64 (168)
T d1uufa2 30 PGKKVGVVG-IGGLGHMGIKLAHAMGA-------HVVAFTTSE 64 (168)
T ss_dssp TTCEEEEEC-CSHHHHHHHHHHHHTTC-------EEEEEESSG
T ss_pred CCCEEEEec-cchHHHHHHHHhhcccc-------cchhhccch
Confidence 346899999 59999988888777764 566777653
|
| >d1nvmb1 c.2.1.3 (B:1-131,B:287-312) Acetaldehyde dehydrogenase (acylating) {Pseudomonas sp. [TaxId: 306]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Acetaldehyde dehydrogenase (acylating) species: Pseudomonas sp. [TaxId: 306]
Probab=88.18 E-value=0.27 Score=37.49 Aligned_cols=37 Identities=24% Similarity=0.502 Sum_probs=24.4
Q ss_pred CCCCCcEEEEEcCCChhHHHHH-HHHHhcccCCCCCCeEEEEE-ecc
Q 019990 1 MAKNPLRVLVTGAAGQIGYALV-PMIARGIMLGPDQPVILHML-DIE 45 (332)
Q Consensus 1 m~~~~~kI~VtGaaG~IGs~l~-~~L~~~~~~~~~~~~~i~l~-D~~ 45 (332)
|+ +++||+|+| +|.||..+. ..|..... .+++.+ |++
T Consensus 1 M~-kkirvaIIG-aG~ig~~~~~~~l~~~~~------~el~avas~~ 39 (157)
T d1nvmb1 1 MN-QKLKVAIIG-SGNIGTDLMIKVLRNAKY------LEMGAMVGID 39 (157)
T ss_dssp CC-SCEEEEEEC-CSHHHHHHHHHHHHHCSS------EEEEEEECSC
T ss_pred CC-CCcEEEEEc-CcHHHHHHHHHHHhhCCc------ceEEEEEecc
Confidence 64 568999999 899998654 44433332 366554 654
|
| >d1cjca2 c.4.1.1 (A:6-106,A:332-460) Adrenodoxin reductase of mitochondrial p450 systems {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-binding domain superfamily: Nucleotide-binding domain family: N-terminal domain of adrenodoxin reductase-like domain: Adrenodoxin reductase of mitochondrial p450 systems species: Cow (Bos taurus) [TaxId: 9913]
Probab=88.16 E-value=0.26 Score=39.46 Aligned_cols=35 Identities=11% Similarity=0.242 Sum_probs=27.9
Q ss_pred cEEEEEcCCChhHHHHHHHHHhcccCCCCCCeEEEEEeccc
Q 019990 6 LRVLVTGAAGQIGYALVPMIARGIMLGPDQPVILHMLDIEP 46 (332)
Q Consensus 6 ~kI~VtGaaG~IGs~l~~~L~~~~~~~~~~~~~i~l~D~~~ 46 (332)
.||+||| +|..|.+.|..|.+.+. + .+|.++|..+
T Consensus 2 ~kv~iIG-aGpaGl~aA~~L~~~~~-~----~~V~v~e~~~ 36 (230)
T d1cjca2 2 PQICVVG-SGPAGFYTAQHLLKHHS-R----AHVDIYEKQL 36 (230)
T ss_dssp CEEEEEC-CSHHHHHHHHHHHHHCS-S----CEEEEECSSS
T ss_pred CeEEEEC-ccHHHHHHHHHHHhcCC-C----CeEEEEeCCC
Confidence 4899999 69999999999976532 1 2899999753
|
| >d1leha1 c.2.1.7 (A:135-364) Leucine dehydrogenase {Bacillus sphaericus [TaxId: 1421]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Leucine dehydrogenase species: Bacillus sphaericus [TaxId: 1421]
Probab=87.47 E-value=0.92 Score=36.65 Aligned_cols=35 Identities=26% Similarity=0.293 Sum_probs=30.0
Q ss_pred CCcEEEEEcCCChhHHHHHHHHHhcccCCCCCCeEEEEEeccc
Q 019990 4 NPLRVLVTGAAGQIGYALVPMIARGIMLGPDQPVILHMLDIEP 46 (332)
Q Consensus 4 ~~~kI~VtGaaG~IGs~l~~~L~~~~~~~~~~~~~i~l~D~~~ 46 (332)
+.++|+|-| .|.||++++..|.+.|. .++..|.+.
T Consensus 38 ~g~~v~IqG-~GnVG~~~a~~L~~~Ga-------kvv~~d~~~ 72 (230)
T d1leha1 38 EGLAVSVQG-LGNVAKALCKKLNTEGA-------KLVVTDVNK 72 (230)
T ss_dssp TTCEEEEEC-CSHHHHHHHHHHHHTTC-------EEEEECSCH
T ss_pred CCCEEEEEC-CCHHHHHHHHHHHHCCC-------EEEeecccH
Confidence 357899999 89999999999998875 788888753
|
| >d2i0za1 c.3.1.8 (A:1-192,A:362-420) Flavoprotein BC4706 {Bacillus cereus [TaxId: 1396]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: HI0933 N-terminal domain-like domain: Flavoprotein BC4706 species: Bacillus cereus [TaxId: 1396]
Probab=87.24 E-value=0.32 Score=39.29 Aligned_cols=30 Identities=27% Similarity=0.236 Sum_probs=27.2
Q ss_pred EEEEcCCChhHHHHHHHHHhcccCCCCCCeEEEEEecc
Q 019990 8 VLVTGAAGQIGYALVPMIARGIMLGPDQPVILHMLDIE 45 (332)
Q Consensus 8 I~VtGaaG~IGs~l~~~L~~~~~~~~~~~~~i~l~D~~ 45 (332)
|+|+| +|..|...|..|.+.|+ +|.++|..
T Consensus 5 ViIIG-aG~aGl~aA~~la~~G~-------~V~liEk~ 34 (251)
T d2i0za1 5 VIVIG-GGPSGLMAAIGAAEEGA-------NVLLLDKG 34 (251)
T ss_dssp EEEEC-CSHHHHHHHHHHHHTTC-------CEEEECSS
T ss_pred EEEEC-cCHHHHHHHHHHHHCCC-------cEEEEeCC
Confidence 99999 69999999999999886 79999975
|
| >d1pqwa_ c.2.1.1 (A:) Putative enoyl reductase domain of polyketide synthase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Putative enoyl reductase domain of polyketide synthase species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=86.99 E-value=0.5 Score=36.30 Aligned_cols=34 Identities=24% Similarity=0.155 Sum_probs=26.6
Q ss_pred CcEEEEEcCCChhHHHHHHHHHhcccCCCCCCeEEEEEecc
Q 019990 5 PLRVLVTGAAGQIGYALVPMIARGIMLGPDQPVILHMLDIE 45 (332)
Q Consensus 5 ~~kI~VtGaaG~IGs~l~~~L~~~~~~~~~~~~~i~l~D~~ 45 (332)
..+|+|+||+|.||...++.+...+. ++...+.+
T Consensus 26 g~~VlI~ga~g~vG~~~iqla~~~g~-------~vi~~~~~ 59 (183)
T d1pqwa_ 26 GERVLIHSATGGVGMAAVSIAKMIGA-------RIYTTAGS 59 (183)
T ss_dssp TCEEEETTTTSHHHHHHHHHHHHHTC-------EEEEEESS
T ss_pred CCEEEEECCCCCcccccchhhccccc-------cceeeecc
Confidence 46899999999999999988877664 56665543
|
| >d1xhca1 c.3.1.5 (A:1-103,A:226-289) NADH oxidase /nitrite reductase {Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: NADH oxidase /nitrite reductase species: Pyrococcus furiosus [TaxId: 2261]
Probab=86.98 E-value=0.29 Score=36.93 Aligned_cols=31 Identities=23% Similarity=0.488 Sum_probs=24.9
Q ss_pred cEEEEEcCCChhHHHHHHHHHhcccCCCCCCeEEEEEecc
Q 019990 6 LRVLVTGAAGQIGYALVPMIARGIMLGPDQPVILHMLDIE 45 (332)
Q Consensus 6 ~kI~VtGaaG~IGs~l~~~L~~~~~~~~~~~~~i~l~D~~ 45 (332)
.||+|+| +|++|..++..|.+ +. ++.+++..
T Consensus 1 ~rVvIIG-gG~~G~e~A~~l~~-~~-------~Vtvv~~~ 31 (167)
T d1xhca1 1 SKVVIVG-NGPGGFELAKQLSQ-TY-------EVTVIDKE 31 (167)
T ss_dssp CEEEEEC-CSHHHHHHHHHHTT-TS-------EEEEECSS
T ss_pred CeEEEEC-CcHHHHHHHHHHHc-CC-------CEEEEecc
Confidence 3899999 69999999988854 32 78888863
|
| >d1o8ca2 c.2.1.1 (A:116-192) Hypothetical protein YhdH {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Hypothetical protein YhdH species: Escherichia coli [TaxId: 562]
Probab=86.97 E-value=0.34 Score=32.12 Aligned_cols=34 Identities=21% Similarity=0.264 Sum_probs=26.7
Q ss_pred CCcEEEEEcCCChhHHHHHHHHHhcccCCCCCCeEEEEEec
Q 019990 4 NPLRVLVTGAAGQIGYALVPMIARGIMLGPDQPVILHMLDI 44 (332)
Q Consensus 4 ~~~kI~VtGaaG~IGs~l~~~L~~~~~~~~~~~~~i~l~D~ 44 (332)
+..+|+|+||+|-||+..++.++..+. +|...-.
T Consensus 31 ~~~~vlI~gasGgVG~~aiQlak~~G~-------~Vi~~t~ 64 (77)
T d1o8ca2 31 QDGEIVVTGASGGVGSTAVALLHKLGY-------QVVAVSG 64 (77)
T ss_dssp GGCEEEESSTTSHHHHHHHHHHHHTTC-------CEEEEES
T ss_pred CCCcEEEEeCCCcHHHHHHHHHHHcCC-------eEEEEEC
Confidence 456899999999999999987777664 5665554
|
| >d1vl6a1 c.2.1.7 (A:155-376) Malate oxidoreductase (malic enzyme) {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Malate oxidoreductase (malic enzyme) species: Thermotoga maritima [TaxId: 2336]
Probab=86.77 E-value=3.1 Score=33.15 Aligned_cols=75 Identities=19% Similarity=0.248 Sum_probs=46.0
Q ss_pred CCcEEEEEcCCChhHHHHHHHHHhcccCCCCCCeEEEEEecccch------hhhhhhHhhhhhhccCCccceEEeCCHHH
Q 019990 4 NPLRVLVTGAAGQIGYALVPMIARGIMLGPDQPVILHMLDIEPAA------EALNGVKMELIDAAFPLLKGVVATTDVVE 77 (332)
Q Consensus 4 ~~~kI~VtGaaG~IGs~l~~~L~~~~~~~~~~~~~i~l~D~~~~~------~~~~~~~~dl~~~~~~~~~~v~~~~~~~~ 77 (332)
...||++.| +|..|..++..|+..+. .++.++|.+..- ..+.....++.+. ...-....++.+
T Consensus 25 ~d~riv~~G-AGsAg~gia~~l~~~~~------~~i~~~D~~GLi~~~r~~~~~~~~~~~~~~~----~~~~~~~~~l~~ 93 (222)
T d1vl6a1 25 EEVKVVVNG-IGAAGYNIVKFLLDLGV------KNVVAVDRKGILNENDPETCLNEYHLEIARI----TNPERLSGDLET 93 (222)
T ss_dssp TTCEEEEEC-CSHHHHHHHHHHHHHTC------CEEEEEETTEECCTTSGGGCSSHHHHHHHHT----SCTTCCCSCHHH
T ss_pred hhcEEEEEC-hHHHHHHHHHHHHHhcc------cceEeecceeEEEcCcccccccHHHHHHHhh----hcchhhhcchHh
Confidence 356899999 69999999999987764 389999976311 0111111111111 011112346778
Q ss_pred HhCCCcEEEEec
Q 019990 78 ACKDVNIAVMVG 89 (332)
Q Consensus 78 a~~~aDiVi~~a 89 (332)
+++++++++-+.
T Consensus 94 ~l~g~~~~~g~~ 105 (222)
T d1vl6a1 94 ALEGADFFIGVS 105 (222)
T ss_dssp HHTTCSEEEECS
T ss_pred hccCcceecccc
Confidence 899999866553
|
| >d1w4xa1 c.3.1.5 (A:10-154,A:390-542) Phenylacetone monooxygenase {Thermobifida fusca [TaxId: 2021]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Phenylacetone monooxygenase species: Thermobifida fusca [TaxId: 2021]
Probab=86.72 E-value=0.29 Score=41.38 Aligned_cols=33 Identities=24% Similarity=0.270 Sum_probs=28.8
Q ss_pred cEEEEEcCCChhHHHHHHHHHhcccCCCCCCeEEEEEeccc
Q 019990 6 LRVLVTGAAGQIGYALVPMIARGIMLGPDQPVILHMLDIEP 46 (332)
Q Consensus 6 ~kI~VtGaaG~IGs~l~~~L~~~~~~~~~~~~~i~l~D~~~ 46 (332)
..|+||| +|+.|-..+..|++.|+ +++++|...
T Consensus 8 ~dV~IIG-AG~sGl~~a~~L~~~G~-------~v~i~Ek~~ 40 (298)
T d1w4xa1 8 VDVLVVG-AGFSGLYALYRLRELGR-------SVHVIETAG 40 (298)
T ss_dssp EEEEEEC-CSHHHHHHHHHHHHTTC-------CEEEECSSS
T ss_pred CCEEEEC-ccHHHHHHHHHHHhCCC-------CEEEEEcCC
Confidence 5799999 69999999999998886 799999753
|
| >d1c1da1 c.2.1.7 (A:149-349) Phenylalanine dehydrogenase {Rhodococcus sp., M4 [TaxId: 1831]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Phenylalanine dehydrogenase species: Rhodococcus sp., M4 [TaxId: 1831]
Probab=86.16 E-value=0.48 Score=37.58 Aligned_cols=35 Identities=31% Similarity=0.438 Sum_probs=30.5
Q ss_pred CCcEEEEEcCCChhHHHHHHHHHhcccCCCCCCeEEEEEeccc
Q 019990 4 NPLRVLVTGAAGQIGYALVPMIARGIMLGPDQPVILHMLDIEP 46 (332)
Q Consensus 4 ~~~kI~VtGaaG~IGs~l~~~L~~~~~~~~~~~~~i~l~D~~~ 46 (332)
+.++|+|-| .|.||++++..|.+.|. +|+..|.+.
T Consensus 26 ~gk~v~IqG-~G~VG~~~A~~L~~~Ga-------kvvv~d~d~ 60 (201)
T d1c1da1 26 DGLTVLVQG-LGAVGGSLASLAAEAGA-------QLLVADTDT 60 (201)
T ss_dssp TTCEEEEEC-CSHHHHHHHHHHHHTTC-------EEEEECSCH
T ss_pred CCCEEEEEC-CCHHHHHHHHHHHHCCC-------EEEEecchH
Confidence 457899999 89999999999999885 889999853
|
| >d2h1qa1 c.67.3.1 (A:1-251) Hypothetical protein Dhaf_3308 {Desulfitobacterium hafniense [TaxId: 49338]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: Dhaf3308-like family: Dhaf3308-like domain: Hypothetical protein Dhaf 3308 species: Desulfitobacterium hafniense [TaxId: 49338]
Probab=85.98 E-value=0.96 Score=37.07 Aligned_cols=116 Identities=16% Similarity=0.170 Sum_probs=66.8
Q ss_pred CcEEEEEcCCChhHHHHHHHHHhcccCCCCCCeEEEEEecccchhhhhhhHhhhhhhccCCccceEEeCCHHHHhCCCcE
Q 019990 5 PLRVLVTGAAGQIGYALVPMIARGIMLGPDQPVILHMLDIEPAAEALNGVKMELIDAAFPLLKGVVATTDVVEACKDVNI 84 (332)
Q Consensus 5 ~~kI~VtGaaG~IGs~l~~~L~~~~~~~~~~~~~i~l~D~~~~~~~~~~~~~dl~~~~~~~~~~v~~~~~~~~a~~~aDi 84 (332)
.+||+++|- . .++..+.+.+. ++.++|+++. . .|+. ....++.+..||+
T Consensus 122 g~kV~vIG~---~--P~v~~l~~~~~-------~~~VlE~~p~----~---gd~p------------~~~~~~lLp~aD~ 170 (251)
T d2h1qa1 122 GKKVGVVGH---F--PHLESLLEPIC-------DLSILEWSPE----E---GDYP------------LPASEFILPECDY 170 (251)
T ss_dssp TSEEEEESC---C--TTHHHHHTTTS-------EEEEEESSCC----T---TCEE------------GGGHHHHGGGCSE
T ss_pred CCEEEEEec---c--hhHHHHHhcCC-------cEEEEeCCCC----C---CCCC------------chHHHHhhhcCCE
Confidence 478999983 1 45666666553 7888987541 1 1111 1234667889999
Q ss_pred EEEecCCCCCCCCChhHHHhhhHHHHHHHHHHHHhhcCCCcEEEEEeCChhhHHHHHHHHCCCCCCCcEEEeecccHHHH
Q 019990 85 AVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEKHAAPNCKVLVVANPANTNALILKEFAPSIPAKNITCLTRLDHNRA 164 (332)
Q Consensus 85 Vi~~ag~~~~~~~~~~~~~~~N~~~~~~i~~~i~~~~~~~~~viv~snp~~~~~~~~~~~~~~~~~~~i~~~t~l~~~r~ 164 (332)
||+|+. .+...+++ .++ +++ +++..++..-|...+.+.+.+ +.-+.+.|..-.|..++
T Consensus 171 viiTGs----------TlvN~Tl~---~LL----~~~-~~a~~vvl~GPS~p~~P~lf~----~Gv~~lag~~v~d~~~~ 228 (251)
T d2h1qa1 171 VYITCA----------SVVDKTLP---RLL----ELS-RNARRITLVGPGTPLAPVLFE----HGLQELSGFMVKDNARA 228 (251)
T ss_dssp EEEETH----------HHHHTCHH---HHH----HHT-TTSSEEEEESTTCCCCGGGGG----TTCSEEEEEEESCHHHH
T ss_pred EEEEec----------hhhcCCHH---HHH----HhC-CcCCEEEEECCCcccCHHHHh----cCCceEeEEEEeCHHHH
Confidence 999962 23333333 222 233 233334444465555553322 34455677778999999
Q ss_pred HHHHHHHcC
Q 019990 165 MGQISERLK 173 (332)
Q Consensus 165 ~~~~a~~~~ 173 (332)
.+.+++--+
T Consensus 229 ~~~i~~Ggg 237 (251)
T d2h1qa1 229 FRIVAGAEK 237 (251)
T ss_dssp HHHHTTSSC
T ss_pred HHHHHcCCC
Confidence 988865433
|
| >d2gqfa1 c.3.1.8 (A:1-194,A:343-401) Hypothetical protein HI0933 {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: HI0933 N-terminal domain-like domain: Hypothetical protein HI0933 species: Haemophilus influenzae [TaxId: 727]
Probab=85.16 E-value=0.26 Score=40.24 Aligned_cols=35 Identities=17% Similarity=0.166 Sum_probs=29.5
Q ss_pred CCcEEEEEcCCChhHHHHHHHHHhcccCCCCCCeEEEEEeccc
Q 019990 4 NPLRVLVTGAAGQIGYALVPMIARGIMLGPDQPVILHMLDIEP 46 (332)
Q Consensus 4 ~~~kI~VtGaaG~IGs~l~~~L~~~~~~~~~~~~~i~l~D~~~ 46 (332)
+...|+|+| +|..|...|..|.+.+. +|.++|...
T Consensus 3 ~~~DViIIG-aG~aGl~aA~~la~~G~-------~V~vlEk~~ 37 (253)
T d2gqfa1 3 QYSENIIIG-AGAAGLFCAAQLAKLGK-------SVTVFDNGK 37 (253)
T ss_dssp EECSEEEEC-CSHHHHHHHHHHHHTTC-------CEEEECSSS
T ss_pred CCCcEEEEC-cCHHHHHHHHHHHHCCC-------cEEEEecCC
Confidence 335699999 69999999999998886 799999753
|
| >d1rq2a1 c.32.1.1 (A:8-205) Cell-division protein FtsZ {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Tubulin nucleotide-binding domain-like superfamily: Tubulin nucleotide-binding domain-like family: Tubulin, GTPase domain domain: Cell-division protein FtsZ species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=85.10 E-value=0.46 Score=37.59 Aligned_cols=110 Identities=20% Similarity=0.164 Sum_probs=59.1
Q ss_pred EEEEEcCCChhHHHHHHHHHhcccCCCCCCeEEEEEecccchhhhhhhHhhhh-hhccCCc------cc--------eEE
Q 019990 7 RVLVTGAAGQIGYALVPMIARGIMLGPDQPVILHMLDIEPAAEALNGVKMELI-DAAFPLL------KG--------VVA 71 (332)
Q Consensus 7 kI~VtGaaG~IGs~l~~~L~~~~~~~~~~~~~i~l~D~~~~~~~~~~~~~dl~-~~~~~~~------~~--------v~~ 71 (332)
+|-|+| -|--|.+++.+|.+.+..+ .+...+|.+ ...+.....+-. ....... .+ ...
T Consensus 3 ~IkViG-vGGaG~n~vn~~~~~~~~~----v~~iainTD--~~~L~~~~~~~ki~iG~~~t~G~Gagg~p~~g~~aa~e~ 75 (198)
T d1rq2a1 3 VIKVVG-IGGGGVNAVNRMIEQGLKG----VEFIAINTD--AQALLMSDADVKLDVGRDSTRGLGAGADPEVGRKAAEDA 75 (198)
T ss_dssp CEEEEE-EHHHHHHHHHHHHHTTCCS----EEEEEEESC--HHHHHHCCCSEEEECCTTTC-----CCCHHHHHHHHHHT
T ss_pred eEEEEE-eCchHHHHHHHHHHcCCCC----ceEEEEcch--HHHHhcCCcchhhccccccccCCCcCcChhhhHhhHHHH
Confidence 577899 7999999999999877633 366666653 222221100000 0000000 01 011
Q ss_pred eCCHHHHhCCCcEEEEecCCCCCCCCChhHHHhhhHHHHHHHHHHHHhhcCCCcEEEEEeCChh
Q 019990 72 TTDVVEACKDVNIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEKHAAPNCKVLVVANPAN 135 (332)
Q Consensus 72 ~~~~~~a~~~aDiVi~~ag~~~~~~~~~~~~~~~N~~~~~~i~~~i~~~~~~~~~viv~snp~~ 135 (332)
...+.++++++|.||++||.....| ....--+++.+++.+ -..+-++|-|..
T Consensus 76 ~~~I~~~l~~~d~vfi~AGlGGgTG----------tGaaPviA~iake~g--~l~v~ivt~PF~ 127 (198)
T d1rq2a1 76 KDEIEELLRGADMVFVTAGEGGGTG----------TGGAPVVASIARKLG--ALTVGVVTRPFS 127 (198)
T ss_dssp HHHHHHHHTTCSEEEEEEETTSSHH----------HHHHHHHHHHHHHHT--CEEEEEEEECCG
T ss_pred HHHHHHHhcCCCEEEEEEecCCCCC----------cchHHHHHHHHHHcC--CcEEEEEecChH
Confidence 2345667899999999998753221 112223445555553 234567777854
|
| >d2gv8a2 c.3.1.5 (A:181-287) Flavin-dependent monoxygenase SPBP16F5.08c {Schizosaccharomyces pombe [TaxId: 4896]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Flavin-dependent monoxygenase SPBP16F5.08c species: Schizosaccharomyces pombe [TaxId: 4896]
Probab=85.02 E-value=0.15 Score=36.10 Aligned_cols=24 Identities=25% Similarity=0.185 Sum_probs=20.3
Q ss_pred CCcEEEEEcCCChhHHHHHHHHHhc
Q 019990 4 NPLRVLVTGAAGQIGYALVPMIARG 28 (332)
Q Consensus 4 ~~~kI~VtGaaG~IGs~l~~~L~~~ 28 (332)
..++|+|+| +|.-|.-++..|...
T Consensus 31 ~gK~VlVVG-~g~Sa~dia~~l~~~ 54 (107)
T d2gv8a2 31 VGESVLVVG-GASSANDLVRHLTPV 54 (107)
T ss_dssp TTCCEEEEC-SSHHHHHHHHHHTTT
T ss_pred CCCeEEEEC-CCCCHHHHHHHHHHh
Confidence 357899999 699999999988653
|
| >d1jqba2 c.2.1.1 (A:1140-1313) Bacterial secondary alcohol dehydrogenase {Clostridium beijerinckii [TaxId: 1520]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Bacterial secondary alcohol dehydrogenase species: Clostridium beijerinckii [TaxId: 1520]
Probab=84.61 E-value=0.7 Score=35.50 Aligned_cols=35 Identities=17% Similarity=0.104 Sum_probs=27.1
Q ss_pred CcEEEEEcCCChhHHHHHHHHHhcccCCCCCCeEEEEEeccc
Q 019990 5 PLRVLVTGAAGQIGYALVPMIARGIMLGPDQPVILHMLDIEP 46 (332)
Q Consensus 5 ~~kI~VtGaaG~IGs~l~~~L~~~~~~~~~~~~~i~l~D~~~ 46 (332)
..+|+|+| +|.||...+..+...+. .+|..+|.++
T Consensus 28 g~~VlI~G-aG~vGl~~~q~ak~~Ga------~~Vi~~d~~~ 62 (174)
T d1jqba2 28 GSSVVVIG-IGAVGLMGIAGAKLRGA------GRIIGVGSRP 62 (174)
T ss_dssp TCCEEEEC-CSHHHHHHHHHHHTTTC------SCEEEECCCH
T ss_pred CCEEEEEc-CCcchhhhhhhhhcccc------cccccccchh
Confidence 45799999 69999988887776653 2688999854
|
| >d1yl7a1 c.2.1.3 (A:2-105,A:215-245) Dihydrodipicolinate reductase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Dihydrodipicolinate reductase species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=84.55 E-value=0.53 Score=34.80 Aligned_cols=23 Identities=39% Similarity=0.534 Sum_probs=20.3
Q ss_pred EEEEEcCCChhHHHHHHHHHhcc
Q 019990 7 RVLVTGAAGQIGYALVPMIARGI 29 (332)
Q Consensus 7 kI~VtGaaG~IGs~l~~~L~~~~ 29 (332)
||+|+||+|.+|+.++..+.+..
T Consensus 1 kI~v~Ga~GrMG~~i~~~i~~~~ 23 (135)
T d1yl7a1 1 RVGVLGAKGKVGATMVRAVAAAD 23 (135)
T ss_dssp EEEEETTTSHHHHHHHHHHHHST
T ss_pred CEEEECCCCHHHHHHHHHHHhCC
Confidence 79999999999999999887644
|
| >d1q1ra1 c.3.1.5 (A:2-114,A:248-319) Putidaredoxin reductase {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Putidaredoxin reductase species: Pseudomonas putida [TaxId: 303]
Probab=84.43 E-value=0.43 Score=36.40 Aligned_cols=35 Identities=11% Similarity=0.067 Sum_probs=26.4
Q ss_pred CCcEEEEEcCCChhHHHHHHHHHhcccCCCCCCeEEEEEec
Q 019990 4 NPLRVLVTGAAGQIGYALVPMIARGIMLGPDQPVILHMLDI 44 (332)
Q Consensus 4 ~~~kI~VtGaaG~IGs~l~~~L~~~~~~~~~~~~~i~l~D~ 44 (332)
...+|+|+| +|++|..++..|.+.+.- ..+.+.+.
T Consensus 2 ~~~~VvIIG-gG~~G~e~A~~l~~~g~~-----v~v~~~~~ 36 (185)
T d1q1ra1 2 ANDNVVIVG-TGLAGVEVAFGLRASGWE-----GNIRLVGD 36 (185)
T ss_dssp CSCEEEEEC-CSHHHHHHHHHHHHTTCC-----SEEEEECS
T ss_pred CCCCEEEEC-CcHHHHHHHHHHHHcCCc-----eEEEEecC
Confidence 356899999 699999999999887641 25555554
|
| >d1ofua1 c.32.1.1 (A:11-208) Cell-division protein FtsZ {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Tubulin nucleotide-binding domain-like superfamily: Tubulin nucleotide-binding domain-like family: Tubulin, GTPase domain domain: Cell-division protein FtsZ species: Pseudomonas aeruginosa [TaxId: 287]
Probab=84.23 E-value=3.3 Score=32.39 Aligned_cols=109 Identities=17% Similarity=0.181 Sum_probs=60.3
Q ss_pred EEEEEcCCChhHHHHHHHHHhcccCCCCCCeEEEEEecccchhhhhhhHh--------hhhhhccCCccce--------E
Q 019990 7 RVLVTGAAGQIGYALVPMIARGIMLGPDQPVILHMLDIEPAAEALNGVKM--------ELIDAAFPLLKGV--------V 70 (332)
Q Consensus 7 kI~VtGaaG~IGs~l~~~L~~~~~~~~~~~~~i~l~D~~~~~~~~~~~~~--------dl~~~~~~~~~~v--------~ 70 (332)
+|.|+| -|..|.+++..|.+.++.+ .++..+|.+. +.+..... ++... .....+. .
T Consensus 3 ~IkViG-vGGaG~n~v~~~~~~~~~~----v~~iainTD~--~~L~~~~~~~ki~iG~~~~~g-~G~gg~p~~g~~aa~e 74 (198)
T d1ofua1 3 VIKVIG-VGGGGGNAVNHMAKNNVEG----VEFICANTDA--QALKNIAARTVLQLGPGVTKG-LGAGANPEVGRQAALE 74 (198)
T ss_dssp CEEEEE-EHHHHHHHHHHHHHTTCCS----EEEEEEESBT--GGGSSCSCSEEEECCHHHHTT-BCCCSCHHHHHHHHHH
T ss_pred eEEEEE-ECchHHHHHHHHHHcCCCC----eEEEEEeCcH--HHHhcCCccceeccccccccC-CCCCCChHHHHHHHHH
Confidence 578999 7999999999998877533 4677777542 22321000 00000 0000010 0
Q ss_pred EeCCHHHHhCCCcEEEEecCCCCCCCCChhHHHhhhHHHHHHHHHHHHhhcCCCcEEEEEeCChh
Q 019990 71 ATTDVVEACKDVNIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEKHAAPNCKVLVVANPAN 135 (332)
Q Consensus 71 ~~~~~~~a~~~aDiVi~~ag~~~~~~~~~~~~~~~N~~~~~~i~~~i~~~~~~~~~viv~snp~~ 135 (332)
....+.+.++++|.||++||.....| ....--+++.+++.+ -..+-+++-|..
T Consensus 75 ~~~~I~~~l~~~d~vfi~AGlGGGTG----------tgaapviA~~ake~g--~lvvaivtlPF~ 127 (198)
T d1ofua1 75 DRERISEVLEGADMVFITTGMGGGTG----------TGAAPIIAEVAKEMG--ILTVAVVTRPFP 127 (198)
T ss_dssp THHHHHHHHTTCSEEEEEEETTSSHH----------HHHHHHHHHHHHHTT--CEEEEEEEECCG
T ss_pred HHHHHHHHhCCCCeEEEEecCCCCcc----------ccHHHHHHHHHHHcC--CCEEEEEecchH
Confidence 12235667899999999998753211 112223555566654 234566777754
|
| >d1llua2 c.2.1.1 (A:144-309) Alcohol dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Pseudomonas aeruginosa [TaxId: 287]
Probab=83.89 E-value=0.85 Score=34.39 Aligned_cols=35 Identities=20% Similarity=0.249 Sum_probs=28.0
Q ss_pred CCcEEEEEcCCChhHHHHHHHHHhcccCCCCCCeEEEEEeccc
Q 019990 4 NPLRVLVTGAAGQIGYALVPMIARGIMLGPDQPVILHMLDIEP 46 (332)
Q Consensus 4 ~~~kI~VtGaaG~IGs~l~~~L~~~~~~~~~~~~~i~l~D~~~ 46 (332)
+..+|+|+| +|.||...+..+...|. ++..+|.++
T Consensus 27 ~g~~VlV~G-aG~vG~~~~~~ak~~G~-------~Vi~~~~~~ 61 (166)
T d1llua2 27 PGQWVAISG-IGGLGHVAVQYARAMGL-------HVAAIDIDD 61 (166)
T ss_dssp TTCEEEEEC-CSHHHHHHHHHHHHTTC-------EEEEEESCH
T ss_pred CCCEEEEee-ccccHHHHHHHHHHcCC-------ccceecchh
Confidence 346899999 59999998887777764 789999753
|
| >d1vdca1 c.3.1.5 (A:1-117,A:244-316) Thioredoxin reductase {Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Thioredoxin reductase species: Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=83.71 E-value=0.24 Score=38.71 Aligned_cols=37 Identities=14% Similarity=0.161 Sum_probs=29.7
Q ss_pred CCCCCcEEEEEcCCChhHHHHHHHHHhcccCCCCCCeEEEEEecc
Q 019990 1 MAKNPLRVLVTGAAGQIGYALVPMIARGIMLGPDQPVILHMLDIE 45 (332)
Q Consensus 1 m~~~~~kI~VtGaaG~IGs~l~~~L~~~~~~~~~~~~~i~l~D~~ 45 (332)
|.-...+|+|+| +|..|...|..|.+.+. ++.++|..
T Consensus 1 m~~~~~~VvIIG-gGpaGl~aA~~~ar~g~-------~v~vie~~ 37 (192)
T d1vdca1 1 LETHNTRLCIVG-SGPAAHTAAIYAARAEL-------KPLLFEGW 37 (192)
T ss_dssp CEEEEEEEEEEC-CSHHHHHHHHHHHHTTC-------CCEEECCS
T ss_pred CCcccceEEEEC-CCHHHHHHHHHHHHcCC-------cEEEEEee
Confidence 444567999999 69999999999988776 67888853
|
| >d1kyqa1 c.2.1.11 (A:1-150) Bifunctional dehydrogenase/ferrochelatase Met8p, N-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Siroheme synthase N-terminal domain-like domain: Bifunctional dehydrogenase/ferrochelatase Met8p, N-terminal domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=83.58 E-value=0.51 Score=35.25 Aligned_cols=33 Identities=18% Similarity=0.310 Sum_probs=28.2
Q ss_pred CCcEEEEEcCCChhHHHHHHHHHhcccCCCCCCeEEEEEec
Q 019990 4 NPLRVLVTGAAGQIGYALVPMIARGIMLGPDQPVILHMLDI 44 (332)
Q Consensus 4 ~~~kI~VtGaaG~IGs~l~~~L~~~~~~~~~~~~~i~l~D~ 44 (332)
+.++|+|+| +|.+|..-+..|+..|- +|++++.
T Consensus 12 ~gkrvLViG-gG~va~~ka~~Ll~~GA-------~VtVvap 44 (150)
T d1kyqa1 12 KDKRILLIG-GGEVGLTRLYKLMPTGC-------KLTLVSP 44 (150)
T ss_dssp TTCEEEEEE-ESHHHHHHHHHHGGGTC-------EEEEEEE
T ss_pred CCCEEEEEC-CCHHHHHHHHHHHHCCC-------EEEEEeC
Confidence 468999999 59999999999998774 7888864
|
| >d2nvwa1 c.2.1.3 (A:2-154,A:374-457) Galactose/lactose metabolism regulatory protein GAL80 {Yeast (Kluyveromyces lactis) [TaxId: 28985]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Galactose/lactose metabolism regulatory protein GAL80 species: Yeast (Kluyveromyces lactis) [TaxId: 28985]
Probab=83.19 E-value=1.9 Score=34.53 Aligned_cols=72 Identities=14% Similarity=0.138 Sum_probs=38.0
Q ss_pred CCCcEEEEEcCCCh----hHHHHHHHHHhcccCCCCCCeEEE-EEecccchhhhhhhHhhhhhhccCCccceEEeCCHHH
Q 019990 3 KNPLRVLVTGAAGQ----IGYALVPMIARGIMLGPDQPVILH-MLDIEPAAEALNGVKMELIDAAFPLLKGVVATTDVVE 77 (332)
Q Consensus 3 ~~~~kI~VtGaaG~----IGs~l~~~L~~~~~~~~~~~~~i~-l~D~~~~~~~~~~~~~dl~~~~~~~~~~v~~~~~~~~ 77 (332)
.+++||+|+| +|. ++......+.+..- ..+|+ ++|.+. +.+......+ .........+..+
T Consensus 14 ~k~irvgiIG-~G~~~~~~~~~h~~ai~~~~~-----~~~ivav~d~~~--~~~~~~~~~~------~~~~~~~~~~~~~ 79 (237)
T d2nvwa1 14 SRPIRVGFVG-LTSGKSWVAKTHFLAIQQLSS-----QFQIVALYNPTL--KSSLQTIEQL------QLKHATGFDSLES 79 (237)
T ss_dssp GCCEEEEEEC-CCSTTSHHHHTHHHHHHHTTT-----TEEEEEEECSCH--HHHHHHHHHT------TCTTCEEESCHHH
T ss_pred CCCeEEEEEe-cCccccHHHHHHHHHHHhcCC-----CeEEEEEEcCCH--HHHHHHHHhc------ccccceeecchhh
Confidence 4578999999 454 55544555544210 12655 678753 2222221111 1122344566766
Q ss_pred HhC--CCcEEEEe
Q 019990 78 ACK--DVNIAVMV 88 (332)
Q Consensus 78 a~~--~aDiVi~~ 88 (332)
.++ +.|+|+++
T Consensus 80 l~~~~~iD~V~i~ 92 (237)
T d2nvwa1 80 FAQYKDIDMIVVS 92 (237)
T ss_dssp HHHCTTCSEEEEC
T ss_pred cccccccceeecc
Confidence 664 57888876
|
| >d2v5za1 c.3.1.2 (A:6-289,A:402-500) Monoamine oxidase B {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Monoamine oxidase B species: Human (Homo sapiens) [TaxId: 9606]
Probab=82.45 E-value=0.53 Score=39.43 Aligned_cols=30 Identities=23% Similarity=0.377 Sum_probs=26.8
Q ss_pred EEEEcCCChhHHHHHHHHHhcccCCCCCCeEEEEEecc
Q 019990 8 VLVTGAAGQIGYALVPMIARGIMLGPDQPVILHMLDIE 45 (332)
Q Consensus 8 I~VtGaaG~IGs~l~~~L~~~~~~~~~~~~~i~l~D~~ 45 (332)
|+|+| +|..|...|..|.+.|+ +|.+++..
T Consensus 2 ViVIG-aG~aGL~aA~~L~~~G~-------~V~VlE~~ 31 (383)
T d2v5za1 2 VVVVG-GGISGMAAAKLLHDSGL-------NVVVLEAR 31 (383)
T ss_dssp EEEEC-CBHHHHHHHHHHHHTTC-------CEEEEESS
T ss_pred EEEEC-CCHHHHHHHHHHHhCCC-------CEEEEecC
Confidence 78999 69999999999999886 79999864
|
| >d1m6ia2 c.3.1.5 (A:264-400) Apoptosis-inducing factor (AIF) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Apoptosis-inducing factor (AIF) species: Human (Homo sapiens) [TaxId: 9606]
Probab=82.33 E-value=0.91 Score=33.25 Aligned_cols=33 Identities=21% Similarity=0.143 Sum_probs=25.9
Q ss_pred CcEEEEEcCCChhHHHHHHHHHh----cccCCCCCCeEEEEEecc
Q 019990 5 PLRVLVTGAAGQIGYALVPMIAR----GIMLGPDQPVILHMLDIE 45 (332)
Q Consensus 5 ~~kI~VtGaaG~IGs~l~~~L~~----~~~~~~~~~~~i~l~D~~ 45 (332)
.++|+|+| +|++|.-++..|.. .+. ++.+++..
T Consensus 37 ~k~i~IvG-gG~~G~E~A~~l~~~~~~~g~-------~Vt~i~~~ 73 (137)
T d1m6ia2 37 VKSITIIG-GGFLGSELACALGRKARALGT-------EVIQLFPE 73 (137)
T ss_dssp CSEEEEEC-CSHHHHHHHHHHHHHHHHHTC-------EEEEECSS
T ss_pred CCEEEEEC-CCHHHHHHHHHHHHHHHhcCC-------EEEEeccc
Confidence 56899999 69999999988853 232 88888864
|
| >d1kola2 c.2.1.1 (A:161-355) Formaldehyde dehydrogenase {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Formaldehyde dehydrogenase species: Pseudomonas putida [TaxId: 303]
Probab=81.99 E-value=1 Score=35.28 Aligned_cols=36 Identities=25% Similarity=0.286 Sum_probs=26.7
Q ss_pred CCcEEEEEcCCChhHHHHHHHHHhcccCCCCCCeEEEEEeccc
Q 019990 4 NPLRVLVTGAAGQIGYALVPMIARGIMLGPDQPVILHMLDIEP 46 (332)
Q Consensus 4 ~~~kI~VtGaaG~IGs~l~~~L~~~~~~~~~~~~~i~l~D~~~ 46 (332)
+..+|+|+| +|.||...+..+...+. .+|..+|.++
T Consensus 25 ~G~tVlV~G-aG~vGl~a~~~ak~~ga------~~Vi~~d~~~ 60 (195)
T d1kola2 25 PGSTVYVAG-AGPVGLAAAASARLLGA------AVVIVGDLNP 60 (195)
T ss_dssp TTCEEEEEC-CSHHHHHHHHHHHHTTC------SEEEEEESCH
T ss_pred CCCEEEEEC-cCHHHHHHHHHHHhhcc------cceeeecccc
Confidence 346899999 69999877776666553 2788999753
|
| >d1v3va2 c.2.1.1 (A:113-294) Leukotriene b4 12-hydroxydehydrogenase/prostaglandin 15-keto reductase {Guinea pig (Cavia porcellus) [TaxId: 10141]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Leukotriene b4 12-hydroxydehydrogenase/prostaglandin 15-keto reductase species: Guinea pig (Cavia porcellus) [TaxId: 10141]
Probab=81.38 E-value=1.3 Score=33.85 Aligned_cols=34 Identities=21% Similarity=0.067 Sum_probs=27.6
Q ss_pred CcEEEEEcCCChhHHHHHHHHHhcccCCCCCCeEEEEEecc
Q 019990 5 PLRVLVTGAAGQIGYALVPMIARGIMLGPDQPVILHMLDIE 45 (332)
Q Consensus 5 ~~kI~VtGaaG~IGs~l~~~L~~~~~~~~~~~~~i~l~D~~ 45 (332)
..+|+|+||+|.+|+..+......|. ++...+.+
T Consensus 30 G~~VlV~ga~ggvG~~aiqlak~~Ga-------~vi~~~~~ 63 (182)
T d1v3va2 30 GETVLVSAAAGAVGSVVGQIAKLKGC-------KVVGAAGS 63 (182)
T ss_dssp SCEEEESSTTSHHHHHHHHHHHHTTC-------EEEEEESS
T ss_pred CCEEEEEeCCCchhHHHHHHHHccCC-------EEEEeCCC
Confidence 46899999999999999888877774 67777654
|
| >d1yb5a2 c.2.1.1 (A:121-294) Quinone oxidoreductase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Quinone oxidoreductase species: Human (Homo sapiens) [TaxId: 9606]
Probab=81.26 E-value=1.1 Score=34.08 Aligned_cols=35 Identities=23% Similarity=0.153 Sum_probs=27.4
Q ss_pred CCcEEEEEcCCChhHHHHHHHHHhcccCCCCCCeEEEEEecc
Q 019990 4 NPLRVLVTGAAGQIGYALVPMIARGIMLGPDQPVILHMLDIE 45 (332)
Q Consensus 4 ~~~kI~VtGaaG~IGs~l~~~L~~~~~~~~~~~~~i~l~D~~ 45 (332)
+..+|+|+||+|.||...+..+...|. +++..+.+
T Consensus 28 ~g~~VlV~Ga~G~vG~~aiq~a~~~G~-------~vi~~~~~ 62 (174)
T d1yb5a2 28 AGESVLVHGASGGVGLAACQIARAYGL-------KILGTAGT 62 (174)
T ss_dssp TTCEEEEETCSSHHHHHHHHHHHHTTC-------EEEEEESS
T ss_pred CCCEEEEEeccccccccccccccccCc-------cccccccc
Confidence 346899999999999998888777774 66666653
|
| >d1rjwa2 c.2.1.1 (A:138-305) Alcohol dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Bacillus stearothermophilus [TaxId: 1422]
Probab=80.61 E-value=1.1 Score=33.63 Aligned_cols=35 Identities=20% Similarity=0.148 Sum_probs=26.9
Q ss_pred CCcEEEEEcCCChhHHHHHHHHHhcccCCCCCCeEEEEEeccc
Q 019990 4 NPLRVLVTGAAGQIGYALVPMIARGIMLGPDQPVILHMLDIEP 46 (332)
Q Consensus 4 ~~~kI~VtGaaG~IGs~l~~~L~~~~~~~~~~~~~i~l~D~~~ 46 (332)
+..+|+|.| +|.||...+..+...+. ++..+|.++
T Consensus 27 ~g~~vlv~G-~G~iG~~a~~~a~~~g~-------~v~~~~~~~ 61 (168)
T d1rjwa2 27 PGEWVAIYG-IGGLGHVAVQYAKAMGL-------NVVAVDIGD 61 (168)
T ss_dssp TTCEEEEEC-CSTTHHHHHHHHHHTTC-------EEEEECSCH
T ss_pred CCCEEEEee-cccchhhhhHHHhcCCC-------eEeccCCCH
Confidence 346899988 69999988777777664 788888753
|
| >d1np3a2 c.2.1.6 (A:1-182) Class I ketol-acid reductoisomerase (KARI) {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Class I ketol-acid reductoisomerase (KARI) species: Pseudomonas aeruginosa [TaxId: 287]
Probab=80.55 E-value=1.6 Score=33.52 Aligned_cols=65 Identities=17% Similarity=0.218 Sum_probs=42.2
Q ss_pred CcEEEEEcCCChhHHHHHHHHHhcccCCCCCCeEEEEEecccchhhhhhhHhhhhhhccCCccceEEeCCHHHHhCCCcE
Q 019990 5 PLRVLVTGAAGQIGYALVPMIARGIMLGPDQPVILHMLDIEPAAEALNGVKMELIDAAFPLLKGVVATTDVVEACKDVNI 84 (332)
Q Consensus 5 ~~kI~VtGaaG~IGs~l~~~L~~~~~~~~~~~~~i~l~D~~~~~~~~~~~~~dl~~~~~~~~~~v~~~~~~~~a~~~aDi 84 (332)
.++|+|+| =|.=|.+-+..|...|+ +|++ ..++.. .. ...--.+ .+.. .+..+|.+.+|+
T Consensus 16 ~k~IaViG-YGsQG~AhAlNLrDSG~-------~V~V-GLr~gs-~s--~~~A~~~-------Gf~v-~~~~eA~~~aDi 75 (182)
T d1np3a2 16 GKKVAIIG-YGSQGHAHACNLKDSGV-------DVTV-GLRSGS-AT--VAKAEAH-------GLKV-ADVKTAVAAADV 75 (182)
T ss_dssp TSCEEEEC-CSHHHHHHHHHHHHTTC-------CEEE-ECCTTC-HH--HHHHHHT-------TCEE-ECHHHHHHTCSE
T ss_pred CCEEEEEe-eCcHhHHHHhhhhhcCC-------CEEE-EcCCCC-cc--HHHHhhh-------cccc-ccHHHHhhhcCe
Confidence 57899999 89999999999999886 4443 332211 11 1100011 1222 357899999999
Q ss_pred EEEec
Q 019990 85 AVMVG 89 (332)
Q Consensus 85 Vi~~a 89 (332)
|.++.
T Consensus 76 im~L~ 80 (182)
T d1np3a2 76 VMILT 80 (182)
T ss_dssp EEECS
T ss_pred eeeec
Confidence 99873
|
| >d2dt5a2 c.2.1.12 (A:78-203) Transcriptional repressor Rex, C-terminal domain {Thermus aquaticus [TaxId: 271]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Transcriptional repressor Rex, C-terminal domain domain: Transcriptional repressor Rex, C-terminal domain species: Thermus aquaticus [TaxId: 271]
Probab=80.38 E-value=0.38 Score=35.05 Aligned_cols=36 Identities=19% Similarity=0.383 Sum_probs=25.4
Q ss_pred CCcEEEEEcCCChhHHHHHHHHHh-cccCCCCCCeEEEEEeccc
Q 019990 4 NPLRVLVTGAAGQIGYALVPMIAR-GIMLGPDQPVILHMLDIEP 46 (332)
Q Consensus 4 ~~~kI~VtGaaG~IGs~l~~~L~~-~~~~~~~~~~~i~l~D~~~ 46 (332)
++.+|+|.| ||..|..|+..+.. .++ .-+.++|.++
T Consensus 2 ~~~~v~I~G-aG~~G~~l~~~l~~~~~~------~iv~fiDdd~ 38 (126)
T d2dt5a2 2 RKWGLCIVG-MGRLGSALADYPGFGESF------ELRGFFDVDP 38 (126)
T ss_dssp SCEEEEEEC-CSHHHHHHHHCSCCCSSE------EEEEEEESCT
T ss_pred CCceEEEEc-CCHHHHHHHHhHhhcCCc------EEEEEEeCch
Confidence 355899999 69999999876543 232 1467788653
|
| >d1a9xa3 c.30.1.1 (A:1-127) Carbamoyl phosphate synthetase (CPS), large subunit PreATP-grasp domains {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PreATP-grasp domain superfamily: PreATP-grasp domain family: BC N-terminal domain-like domain: Carbamoyl phosphate synthetase (CPS), large subunit PreATP-grasp domains species: Escherichia coli [TaxId: 562]
Probab=80.22 E-value=1.4 Score=31.93 Aligned_cols=38 Identities=21% Similarity=0.283 Sum_probs=28.9
Q ss_pred CCC--CCcEEEEEcCCCh-----------hHHHHHHHHHhcccCCCCCCeEEEEEeccc
Q 019990 1 MAK--NPLRVLVTGAAGQ-----------IGYALVPMIARGIMLGPDQPVILHMLDIEP 46 (332)
Q Consensus 1 m~~--~~~kI~VtGaaG~-----------IGs~l~~~L~~~~~~~~~~~~~i~l~D~~~ 46 (332)
|++ +.+||+|+| +|. -+.+.+..|.+.|+ ++++++.++
T Consensus 1 mp~~~~~kkvlilG-sGp~~IGq~~EfDy~~~~a~~alke~g~-------~~iliN~NP 51 (127)
T d1a9xa3 1 MPKRTDIKSILILG-AGPIVIGQACEFDYSGAQACKALREEGY-------RVINVNSNP 51 (127)
T ss_dssp CCCCSSCCEEEEEC-CCSCBTTBCTHHHHHHHHHHHHHHHHTC-------EEEEECSCT
T ss_pred CCCCCCCCEEEEEC-CCcCcccccchhHHHHHHHHHHHHHcCC-------eEEEecCch
Confidence 776 458999999 453 36677778888886 899999865
|
| >d1lc0a1 c.2.1.3 (A:2-128,A:247-291) Biliverdin reductase {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Biliverdin reductase species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=80.19 E-value=0.63 Score=35.52 Aligned_cols=24 Identities=21% Similarity=0.364 Sum_probs=20.0
Q ss_pred CCCcEEEEEcCCChhHHHHHHHHHh
Q 019990 3 KNPLRVLVTGAAGQIGYALVPMIAR 27 (332)
Q Consensus 3 ~~~~kI~VtGaaG~IGs~l~~~L~~ 27 (332)
+.++||+|+| +|.+|+..+..|..
T Consensus 5 ~~k~kv~iIG-~G~~g~~h~~~l~~ 28 (172)
T d1lc0a1 5 SGKFGVVVVG-VGRAGSVRLRDLKD 28 (172)
T ss_dssp CCSEEEEEEC-CSHHHHHHHHHHTS
T ss_pred CCCcEEEEEc-CCHHHHHHHHHHHh
Confidence 4578999999 79999998887754
|