Citrus Sinensis ID: 019995

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330--
Protein Sequence
MGVDMGSMRAALPSVGMVIVLLAQVSNMEVIKAAMSKGINKYVIIVYSDALSSLFFLFCSFLFHRSERPQLTFSILCSFFLLSVFGCSSQIFSFVGIQYSSPTLSTAMLNLIPAFTFVLAIIFRLEKLNWENKSSQAKSLGTFASIGGAFVVTFYKGPPLIGELSHSGSPRRLLLSPQLSWILGGFFLAAEAFMNSAWFILQALILRKFAAVLIIMFYLFFFNTILSTAFALIVVSEPSDWKLGLDIGLVAVLYSVSSYWHWVSSWLVHMVPVENWTSLCINVQALGHCLLYCHGCRHCRRRFLSWKVLLINFFSNDFRFNSNWFTYVLELT
Secondary Structure (PSIPRED)
ccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHcccccccEEEEEEEcccHHHHHHHHcccHHHHHHHHHHHHHHccccccccccHHHHHHHHHccccEEEEEEcccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHEEEEEEccccccEEcccccEEEEEEEccHHHHHHHHEEccEEEEEEcccHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHccccccccccEEEEEEEcc
Secondary Structure Prediction (SSPRO)
ccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccHHHEEEHHHHHHHHHHHHHHccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHccccHEEEcccHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHcccccEEEEHHHHHHHEEHHHcccccccccccEEEEEEcc
Coil and Loop (DISEMBL)
mgvdmgsmraalpSVGMVIVLLAQVSNMEVIKAAMSKGINKYVIIVYSDALSSLFFLFCSFlfhrserpqltfSILCSFFLLsvfgcssqIFSFVgiqyssptlSTAMLNLIPAFTFVLAIIFRLEKLNWENKSSQAKSLGTFASIGGAFvvtfykgppligelshsgsprrlllspqlswilGGFFLAAEAFMNSAWFILQALILRKFAAVLIIMFYLFFFNTILSTAFALIVvsepsdwklglDIGLVAVLYSVSSYWHWVSSWLVHMVPVENWTSLCINVQALGHCLlychgcrhcrrRFLSWKVLLINFfsndfrfnsnWFTYVLELT
Flexible Loop (DISEMBL)
MGVDMGSMRAALPSVGMVIVLLAQVSNMEVIKAAMSKGINKYVIIVYSDALSSLFFLFCSFLFHRSERPQLTFSILCSFFLLSVFGCSSQIFSFVGIQYSSPTLSTAMLNLIPAFTFVLAIIFRLEKLNWENKSSQAKSLGTFASIGGAFVVTFYKGPPLIGELSHSGSPRRLLLSPQLSWILGGFFLAAEAFMNSAWFILQALILRKFAAVLIIMFYLFFFNTILSTAFALIVVSEPSDWKLGLDIGLVAVLYSVSSYWHWVSSWLVHMVPVENWTSLCINVQALGHCLLYCHGCRHCRRRFLSWKVLLINffsndfrfnsnWFTYVLELT
Low Complexity Region (SEG)
MGVDMGSMRAALPSVGMVIVLLAQVSNMEVIKAAMSKGINKYVIIVYSDAlsslfflfcsflfHRSERPQLTFSILCSFFLLSVFGCSSQIFSFVGIQYSSPTLSTAMLNLIPAFTFVLAIIFRLEKLNWENKSSQAKSLGTFASIGGAFVVTFYKGPPLIGElshsgsprrlllspqlsWILGGFFLAAEAFMNSAWFILQALILRKFAAVLIIMFYLFFFNTILSTAFALIVVSEPSDWKLGLDIGLVAvlysvssywhwvsswlvhMVPVENWTSLCINVQALGHCLLYCHGCRHCRRRFLSWKVLLInffsndfrfnsnwfTYVLELT
Disordered region (IsUnstruct)
***********LPSVGMVIVLLAQVSNMEVIKAAMSKGINKYVIIVYSDALSSLFFLFCSFLFHRSERPQLTFSILCSFFLLSVFGCSSQIFSFVGIQYSSPTLSTAMLNLIPAFTFVLAIIFRLEKLNWENKSSQAKSLGTFASIGGAFVVTFYKGPPLIGELSHSGSPRRLLLSPQLSWILGGFFLAAEAFMNSAWFILQALILRKFAAVLIIMFYLFFFNTILSTAFALIVVSEPSDWKLGLDIGLVAVLYSVSSYWHWVSSWLVHMVPVENWTSLCINVQALGHCLLYCHGCRHCRRRFLSWKVLLINFFSNDFRFNSNWFTYVLE**
Disordered Region (DISOPRED)
************PSVGMVIVLLAQVSNMEVIKAAMSKGINKYVIIVYSDALSSLFFLFCSFLFHRSERPQLTFSILCSFFLLSVFGCSSQIFSFVGIQYSSPTLSTAMLNLIPAFTFVLAIIFRLEKLNWENKSSQAKSLGTFASIGGAFVVTFYKGPPLI*******************WILGGFFLAAEAFMNSAWFILQALILRKFAAVLIIMFYLFFFNTILSTAFALIVVSEPSDWKLGLDIGLVAVLYSVSSYWHWVSSWLVHMVPVENWTSLCINVQALGHCLLYCHGCRHCRRRFLSWKVLLINFFSNDFRFNSNWFTYVLELT
Disordered Region (DISEMBL)
MGVDMGSMRAALPSVGMVIVLLAQVSNMEVIKAAMSKGINKYVIIVYSDALSSLFFLFCSFLFHRSERPQLTFSILCSFFLLSVFGCSSQIFSFVGIQYSSPTLSTAMLNLIPAFTFVLAIIFRLEKLNWENKSSQAKSLGTFASIGGAFVVTFYKGPPLIGELSHSGSPRRLLLSPQLSWILGGFFLAAEAFMNSAWFILQALILRKFAAVLIIMFYLFFFNTILSTAFALIVVSEPSDWKLGLDIGLVAVLYSVSSYWHWVSSWLVHMVPVENWTSLCINVQALGHCLLYCHGCRHCRRRFLSWKVLLINFFSNDFRFNSNWFTYVLELT
Disordered Region (DISPRO)
*****GSMRAALPSVGMVIVLLAQVSNMEVIKAAMSKGINKYVIIVYSDALSSLFFLFCSFLFHRSERPQLTFSILCSFFLLSVFGCSSQIFSFVGIQYSSPTLSTAMLNLIPAFTFVLAIIFRLEKLNWENKSSQAKSLGTFASIGGAFVVTFYKGPPLIGEL**************LSWILGGFFLAAEAFMNSAWFILQALILRKFAAVLIIMFYLFFFNTILSTAFALIVVSEPSDWKLGLDIGLVAVLYSVSSYWHWVSSWLVHMVPVENWTSLCINVQALGHCLLYCHGCRHCRRRFLSWKVLLINFFSNDFRFNSNWFTYVLELT
Transmembrane Helix (TMHMM)
iiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (HMMTOP)
iiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHoooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHoooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHoooooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHooooooooooHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHoooooooooooooHHHHHHHHHHHHHHHHHHHHiiiHHHHHHHHHHHHHHHHHHHHHHoooooooooooHHHHHHHHHHHHHHHHiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSoooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHoooooooooooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MGVDMGSMRAALPSVGMVIVLLAQVSNMEVIKAAMSKGINKYVIIVYSDALSSLFFLFCSFLFHRSERPQLTFSILCSFFLLSVFGCSSQIFSFVGIQYSSPTLSTAMLNLIPAFTFVLAIIFRLEKLNWENKSSQAKSLGTFASIGGAFVVTFYKGPPLIGELSHSGSPRRLLLSPQLSWILGGFFLAAEAFMNSAWFILQALILRKFAAVLIIMFYLFFFNTILSTAFALIVVSEPSDWKLGLDIGLVAVLYSVSSYWHWVSSWLVHMVPVENWTSLCINVQALGHCLLYCHGCRHCRRRFLSWKVLLINFFSNDFRFNSNWFTYVLELT
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	332	2.2.26 [Sep-21-2011]
Q9FL08	368	WAT1-related protein At5g	yes	no	0.789	0.711	0.372	3e-38
Q94JU2	367	WAT1-related protein At3g	no	no	0.719	0.651	0.423	3e-38
F4KHA8	370	WAT1-related protein At5g	no	no	0.789	0.708	0.343	7e-35
Q945L4	339	WAT1-related protein At5g	no	no	0.731	0.716	0.362	2e-34
Q9FL41	402	WAT1-related protein At5g	no	no	0.680	0.562	0.324	2e-29
Q9ZUS1	380	WAT1-related protein At2g	no	no	0.933	0.815	0.296	3e-29
F4JK59	347	WAT1-related protein At4g	no	no	0.719	0.688	0.354	2e-28
Q56X95	355	WAT1-related protein At3g	no	no	0.713	0.667	0.355	6e-28
Q9LRS5	353	WAT1-related protein At3g	no	no	0.704	0.662	0.364	6e-28
Q9M130	365	WAT1-related protein At4g	no	no	0.728	0.663	0.327	7e-28

>sp|Q9FL08|WTR42_ARATH WAT1-related protein At5g40240 OS=Arabidopsis thaliana GN=At5g40240 PE=2 SV=1

 Score =  159 bits (402), Expect = 3e-38,   Method: Compositional matrix adjust.
 Identities = 101/271 (37%), Positives = 149/271 (54%), Gaps = 9/271 (3%)

Query: 9   RAALPSVGMVIVLLAQVSNMEVIKAAMSKGINKYVIIVYSDALSSLFFLFCSFLFHRSER 68
           R  +P   M  V  A V +  + KAA  +G++ YV + YS  +S+L  L  S +F RS R
Sbjct: 16  RDVVPFAAMFAVECATVGSNTLFKAATLRGLSFYVFVFYSYIVSTLLLLPLSVIFGRSRR 75

Query: 69  -PQLTFSILCSFFLLSVFGCSSQIFSFVGIQYSSPTLSTAMLNLIPAFTFVLAIIFRLEK 127
            P     +    FLL + G  SQI    GI YSSPTL++A+ NL PAFTF LA+IFR+E+
Sbjct: 76  LPAAKSPLFFKIFLLGLVGFMSQIAGCKGIAYSSPTLASAISNLTPAFTFTLAVIFRMEQ 135

Query: 128 LNWENKSSQAKSLGTFASIGGAFVVTFYKGPPLIGELSHSGSPRRLLLSPQL-----SWI 182
           +   + ++QAK +G   SI GA VV  YKGP ++   S +     + L  QL     SWI
Sbjct: 136 VRLRSSATQAKIIGAILSISGALVVVLYKGPQVLASASFTTVLPTVTLHQQLTSIESSWI 195

Query: 183 LGGFFLAAEAFMNSAWFILQALILRKFAAVLIIMFYLFFFNTILSTAFALIVVSEPSDWK 242
           +GG  LA++ F+ S W+ILQ  ++  +   + ++F+   F T++S    L   S  + W 
Sbjct: 196 IGGLLLASQYFLISVWYILQTRVMEVYPEEITVVFFYNLFATLISVPVCLFAESNLTSWV 255

Query: 243 LGLDIGLVAVLYS---VSSYWHWVSSWLVHM 270
           L  DI L A++YS   VS +     +W +H+
Sbjct: 256 LKPDISLAAIIYSGVFVSLFSALTHTWGLHL 286

Arabidopsis thaliana (taxid: 3702)

>sp|Q94JU2|WTR18_ARATH WAT1-related protein At3g28050 OS=Arabidopsis thaliana GN=At3g28050 PE=2 SV=1

 Score =  159 bits (401), Expect = 3e-38,   Method: Compositional matrix adjust.
 Identities = 108/255 (42%), Positives = 153/255 (60%), Gaps = 16/255 (6%)

Query: 9   RAALPSVGMVIVLLAQVSNMEVIKAAMSKGINKYVIIVYSDALSSLFF---LFCSFLFHR 65
           R  LP   +VI+  A V    + KAA  KG++ +V IVYS  L++L     LFCSF   R
Sbjct: 8   REVLPVTALVIMECANVGLNTLFKAATLKGMSFHVFIVYSYGLAALLLLPSLFCSF---R 64

Query: 66  SER-PQLTFSILCSFFLLSVFGCSSQIFSFVGIQYSSPTLSTAMLNLIPAFTFVLAIIFR 124
           S   P + FSIL    LL + GC S I  + GI YSSPTL++A+ NL PAFTF+LA++FR
Sbjct: 65  SRTLPPMNFSILYKIVLLGIIGCCSNIMGYTGINYSSPTLASAISNLTPAFTFLLAVVFR 124

Query: 125 LEKLNWENKSSQAKSLGTFASIGGAFVVTFYKGPPLIGELSHSGSPRRLLLSPQLSWILG 184
           +E ++++  SS AK LGT  SIGGAF+VT Y GP +I +   S S R    +P   WILG
Sbjct: 125 MESVSFKRTSSVAKMLGTVVSIGGAFIVTLYNGPVVIAKSPPSVSLRSQSTNPN--WILG 182

Query: 185 GFFLAAEAFMNSAWFILQALILRKFAAVLIIMFYLFFFNTILSTAFALIVV-SEPSD--- 240
             FLA E F    W+I+Q  I+R++ A   +   + F++  +S   AL+ + +E +D   
Sbjct: 183 AGFLAVEYFCVPLWYIVQTQIMREYPAEFTV---VCFYSIGVSFWTALVTLFTEGNDLGA 239

Query: 241 WKLGLDIGLVAVLYS 255
           WK+  +I LV+++ S
Sbjct: 240 WKIKPNIALVSIVCS 254

Arabidopsis thaliana (taxid: 3702)

>sp|F4KHA8|WTR41_ARATH WAT1-related protein At5g40230 OS=Arabidopsis thaliana GN=At5g40230 PE=2 SV=1

 Score =  147 bits (372), Expect = 7e-35,   Method: Compositional matrix adjust.
 Identities = 93/271 (34%), Positives = 150/271 (55%), Gaps = 9/271 (3%)

Query: 9   RAALPSVGMVIVLLAQVSNMEVIKAAMSKGINKYVIIVYSDALSSLFFLFCSFLFHRSER 68
           R  +P   MV V    V +  + KAA  +G++ YV + Y+  +++L  L  S +F RS+R
Sbjct: 17  RDVVPFTAMVAVECVTVGSNTLFKAATLRGLSFYVFVFYTYVVATLVLLPLSLIFGRSKR 76

Query: 69  -PQLTFSILCSFFLLSVFGCSSQIFSFVGIQYSSPTLSTAMLNLIPAFTFVLAIIFRLEK 127
            P     +  + FLL++ G  S I    GI+YSSPTL++A+ NL PAFTF LA+IFR+E+
Sbjct: 77  LPSAKTPVFFNIFLLALVGFMSLIVGCKGIEYSSPTLASAISNLTPAFTFTLAVIFRMEQ 136

Query: 128 LNWENKSSQAKSLGTFASIGGAFVVTFYKGPPLIGELSHSGSPRRLLLSPQL-----SWI 182
           +   + ++QAK +GT  SI GA VV  YKGP ++ + S +     + L   L     SWI
Sbjct: 137 IVLRSSATQAKIIGTIVSISGALVVILYKGPKVLTDASLTPPSPTISLYQHLTSFDSSWI 196

Query: 183 LGGFFLAAEAFMNSAWFILQALILRKFAAVLIIMFYLFFFNTILSTAFALIVVSEPSDWK 242
           +GG  LA +  + S W+ILQ  ++  +   + ++F      T++S    L    + + + 
Sbjct: 197 IGGLLLATQYLLVSVWYILQTRVMELYPEEITVVFLYNLCATLISAPVCLFAEKDLNSFI 256

Query: 243 LGLDIGLVAVLYS---VSSYWHWVSSWLVHM 270
           L   + L +V+YS   VSS+   + +W +H+
Sbjct: 257 LKPGVSLASVMYSGGLVSSFGSVIHTWGLHL 287

Arabidopsis thaliana (taxid: 3702)

>sp|Q945L4|WTR40_ARATH WAT1-related protein At5g40210 OS=Arabidopsis thaliana GN=At5g40210 PE=2 SV=1

 Score =  146 bits (369), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 95/262 (36%), Positives = 147/262 (56%), Gaps = 19/262 (7%)

Query: 17  MVIVLLAQVSNMEVIKAAMSKGINKYVIIVYSDALSSLFFLFCSFLFHRSER-PQLTFSI 75
           MV+   + V    ++KAA SKG++ +V++VYS    SL  L  +F   RS   P LTFSI
Sbjct: 17  MVVTEFSNVGVNTLVKAATSKGLSPFVVLVYSYTFGSLLLLPLTFFSFRSRSLPPLTFSI 76

Query: 76  LCSFFLLSVFGCSSQIFSFVGIQYSSPTLSTAMLNLIPAFTFVLAIIFRLEKLNWENKSS 135
           LC+  +L +   + QI  + GI+YSSPTLS+AM N+ PAFTF+LA++FR+E ++   KSS
Sbjct: 77  LCNMGILGLIASAFQILGYNGIKYSSPTLSSAMSNVNPAFTFILAVVFRMENISLGKKSS 136

Query: 136 QAKSLGTFASIGGAFVVTFYKGPPLIGELSHSGSPRRLLLSPQLSWILGGFFLAAEAFMN 195
            AK LGT  SI GA VVT Y GP              +L+S    WI+GG  LA +  + 
Sbjct: 137 VAKVLGTILSIIGALVVTLYHGP--------------MLMSSHSDWIIGGGLLALQYILV 182

Query: 196 SAWFILQALILRKF-AAVLIIMFYLFFFNTILSTAFALIVVSEPSDWKLGLDIGLVAVLY 254
           S  +++ A  + ++ +AV++ + +      + +    L     P  W +  DI L+ V+ 
Sbjct: 183 SVSYLVMAHTMGRYPSAVVVTLVHNVCIAVVCAFVSLLAEKDNPKAWVIRFDITLITVVA 242

Query: 255 S--VSSYWHWVSSWLV-HMVPV 273
           +  ++S ++ + +W V H  PV
Sbjct: 243 TGILNSGYYVIHTWAVSHKGPV 264

Arabidopsis thaliana (taxid: 3702)

>sp|Q9FL41|WTR38_ARATH WAT1-related protein At5g07050 OS=Arabidopsis thaliana GN=At5g07050 PE=2 SV=1

 Score =  130 bits (326), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 77/237 (32%), Positives = 132/237 (55%), Gaps = 11/237 (4%)

Query: 30  VIKAAMSKGINKYVIIVYSDALSSLFFLFCSFLFHRSERPQLTFSILCSFFLLSVFG-CS 88
           + K +++ G++ YV++VY  A+++      +F F R  +P++TFSI    F+L + G   
Sbjct: 35  ITKISLNTGMSHYVLVVYRHAIATAVIAPFAFFFERKAQPKITFSIFMQLFILGLLGPVI 94

Query: 89  SQIFSFVGIQYSSPTLSTAMLNLIPAFTFVLAIIFRLEKLNWENKSSQAKSLGTFASIGG 148
            Q F ++G++Y+SPT S AM N++PA TF+LA++FR+E L+ +    QAK  GT  ++ G
Sbjct: 95  DQNFYYMGLKYTSPTFSCAMSNMLPAMTFILAVLFRMEMLDLKKLWCQAKIAGTVVTVAG 154

Query: 149 AFVVTFYKGPPL---------IGELSHSGSPRRLLLSPQLSWILGGFFLAAEAFMNSAWF 199
           A ++T YKGP +         I + SH+ +      S    ++ G   L       ++ F
Sbjct: 155 AMLMTIYKGPIVELFWTKYMHIQDSSHANTTSSKNSSSDKEFLKGSILLIFATLAWASLF 214

Query: 200 ILQALILRKFAAVLIIMFYLF-FFNTILSTAFALIVVSEPSDWKLGLDIGLVAVLYS 255
           +LQA IL+ +A   + +  L  F  T+ + A   ++   PS W++G D+ L+A  YS
Sbjct: 215 VLQAKILKTYAKHQLSLTTLICFIGTLQAVAVTFVMEHNPSAWRIGWDMNLLAAAYS 271

Arabidopsis thaliana (taxid: 3702)

>sp|Q9ZUS1|WTR13_ARATH WAT1-related protein At2g37460 OS=Arabidopsis thaliana GN=At2g37460 PE=2 SV=1

 Score =  129 bits (324), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 99/334 (29%), Positives = 170/334 (50%), Gaps = 24/334 (7%)

Query: 8   MRAALPSVGMVIVLLAQVSNMEVI-KAAMSKGINKYVIIVYSDALSSLFFLFCSFLFHRS 66
           M  A P + MV VL   ++ M+++ KA ++KG++ YV++VY  A++++     +F F + 
Sbjct: 10  MEKARPFISMV-VLQVGLAGMDILSKAVLNKGMSNYVLVVYRHAVATIVMAPFAFYFDKK 68

Query: 67  ERPQLTFSILCSFFLLSVFG----CSSQIFSFVGIQYSSPTLSTAMLNLIPAFTFVLAII 122
            RP++T  I   FF +S+ G       Q   ++G++Y++ T +TAM N++PA TFVLA I
Sbjct: 69  VRPKMTLMI---FFKISLLGLLEPVIDQNLYYLGMKYTTATFATAMYNVLPAITFVLAYI 125

Query: 123 FRLEKLNWENKSSQAKSLGTFASIGGAFVVTFYKGPPLIGELSHSGSPRRLLLSPQLSWI 182
           F LE++      S  K +GT A++GGA ++T  KGP L    +   S      +   S I
Sbjct: 126 FGLERVKLRCIRSTGKVVGTLATVGGAMIMTLVKGPVLDLFWTKGVSAHNTAGTDIHSAI 185

Query: 183 LGGFFLAAEAFMNSAWFILQALILRKFAAVLIIMFYLFFFNTILSTAFALIVVS-EPSDW 241
            G   +    F  + + ILQA+ LR + A L +  ++    TI  TA AL++    PS W
Sbjct: 186 KGAVLVTIGCFSYACFMILQAITLRTYPAELSLTAWICLMGTIEGTAVALVMEKGNPSAW 245

Query: 242 KLGLDIGLVAVLYS---VSSYWHWVSSWLVHM---VPVENWTSLCINVQALGHCLLYCHG 295
            +G D  L+   YS    S+  ++V   ++     V V  ++ LC+ + A+   +++   
Sbjct: 246 AIGWDTKLLTATYSGIVCSALAYYVGGVVMKTRGPVFVTAFSPLCMIIVAIMSTIIFAE- 304

Query: 296 CRHCRRRFLSWKVLLINFF------SNDFRFNSN 323
            +    R L   V+    +        D+++NS 
Sbjct: 305 -QMYLGRVLGAVVICAGLYLVIWGKGKDYKYNST 337

Arabidopsis thaliana (taxid: 3702)

>sp|F4JK59|WTR33_ARATH WAT1-related protein At4g15540 OS=Arabidopsis thaliana GN=At4g15540 PE=2 SV=1

 Score =  126 bits (316), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 88/248 (35%), Positives = 137/248 (55%), Gaps = 9/248 (3%)

Query: 9   RAALPSVGMVIVLLAQVSNMEVIKAAMSKGINKYVIIVYSDALSSLFFLFCSFLFHRSER 68
           R  +P   M+ +    V +  + KAA  +G + YV + Y+   ++L  L  S +F RS  
Sbjct: 13  RDVVPFTAMIAIECTTVGSSILYKAATLRGFSFYVFVFYAYVGATLVLLLLSLIFGRSRS 72

Query: 69  -PQLTFSILCSFFLLSVFGCSSQIFSFVGIQYSSPTLSTAMLNLIPAFTFVLAIIFRLEK 127
            P    S+    FLL++ G +S++    GI+YSSPTLS+A+ NL PAFTF+LAI FR+E+
Sbjct: 73  LPTAKSSLFFKIFLLALLGLTSRVAGCKGIEYSSPTLSSAISNLTPAFTFILAIFFRMEQ 132

Query: 128 LNWENKSSQAKSLGTFASIGGAFVVTFYKGPPLIGELSHSGSPRRLLLSPQLSWILGGFF 187
           +   + ++QAK +GT  SI GA V+  YKGP L+   S +        S + SWI+GG  
Sbjct: 133 VMLRSSATQAKIIGTIVSISGALVIVLYKGPKLLVAASFT--------SFESSWIIGGLL 184

Query: 188 LAAEAFMNSAWFILQALILRKFAAVLIIMFYLFFFNTILSTAFALIVVSEPSDWKLGLDI 247
           L  +  + S WFILQ  I+  +   + ++F      T++S    L+V  + + W+L    
Sbjct: 185 LGLQFLLLSVWFILQTHIMEIYPEEIAVVFCYNLCATLISGTVCLLVEKDLNSWQLKPGF 244

Query: 248 GLVAVLYS 255
            L +V+YS
Sbjct: 245 SLASVIYS 252

Arabidopsis thaliana (taxid: 3702)

>sp|Q56X95|WTR23_ARATH WAT1-related protein At3g28130 OS=Arabidopsis thaliana GN=At3g28130 PE=2 SV=1

 Score =  125 bits (313), Expect = 6e-28,   Method: Compositional matrix adjust.
 Identities = 92/259 (35%), Positives = 139/259 (53%), Gaps = 22/259 (8%)

Query: 9   RAALPSVGMVIVLLAQVSNMEVIKAAMSKGINKYVIIVYSDALSSLFFLFCS-FLFHRSE 67
           R A+    M+      V+   + KAA SKG+N Y  ++YS  + S+  L    F +    
Sbjct: 9   RDAVLLTAMLATETGNVAMNTLFKAATSKGLNSYTFLIYSYLIGSIVLLPSHIFSYRSRS 68

Query: 68  RPQLTFSILCSFFLLSVFGCSSQIFSFVGIQYSSPTLSTAMLNLIPAFTFVLAIIFRLEK 127
            P L+ SILC   +L + G +  I  F+GI+YS+PTL++A+ N+ PA TF+LAIIFR+EK
Sbjct: 69  LPSLSLSILCKIGVLGLLGSTYLITGFIGIEYSNPTLASAISNINPAITFILAIIFRMEK 128

Query: 128 LNWENKSSQAKSLGTFASIGGAFVVTFYKGPPLIGELSHSGSPRRLLLSPQL-------- 179
            +++ KSS AK +GT  S+ GA VV  Y GP +    + S  P      PQL        
Sbjct: 129 ASFKEKSSVAKMVGTIVSLVGALVVVLYHGPRV---FTPSSPPF-----PQLRQLLLPLS 180

Query: 180 ----SWILGGFFLAAEAFMNSAWFILQALILRKFAAVLIIMFYLFFFNTILSTAFALIV- 234
                WI+GG  LA +  +    FILQA I++ + A   + F+ F   +IL++   ++  
Sbjct: 181 SSNSDWIIGGCLLAIKDTLVPVAFILQAHIMKLYPAPFTVSFFYFLIASILTSLIGIVAE 240

Query: 235 VSEPSDWKLGLDIGLVAVL 253
            + PS W +  DI LV ++
Sbjct: 241 KNNPSIWIIHFDITLVCIV 259

Arabidopsis thaliana (taxid: 3702)

>sp|Q9LRS5|WTR22_ARATH WAT1-related protein At3g28100 OS=Arabidopsis thaliana GN=At3g28100 PE=2 SV=1

 Score =  125 bits (313), Expect = 6e-28,   Method: Compositional matrix adjust.
 Identities = 91/250 (36%), Positives = 135/250 (54%), Gaps = 16/250 (6%)

Query: 32  KAAMSKGINKYVIIVYSDALSSLFFLFCSFLFHRSER-PQLTFSILCSFFLLSVFGCSSQ 90
           K A SKG+N Y  + YS  L+SL  L   F   RS   P L+ SIL    LL + G    
Sbjct: 33  KVATSKGLNLYAFLGYSYLLASLLLLPSLFFTDRSRSLPPLSLSILSKIGLLGLLGSMYV 92

Query: 91  IFSFVGIQYSSPTLSTAMLNLIPAFTFVLAIIFRLEKLNWENKSSQAKSLGTFASIGGAF 150
           I  ++GI+YSSPTL++A+ N+ PA TF+LAIIFR+EK++++ +SS AK +GT  S+ GA 
Sbjct: 93  ITGYIGIEYSSPTLASAISNITPALTFILAIIFRMEKVSFKERSSVAKVMGTILSLIGAL 152

Query: 151 VVTFYKGPPLIGELSHSGSPRRL--------LLSPQLSWILGGFFLAAEAFMNSAWFILQ 202
           VV  Y GP     +  + SP  +        L S    W++GG  L       S  FILQ
Sbjct: 153 VVVLYHGP----RVFVASSPPYINFRQLSPPLSSSNSDWLIGGALLTIRDIFVSVSFILQ 208

Query: 203 ALILRKFAAVLIIMFYLFFFNTILSTAFALIV-VSEPSDWKLGLDIGLVAVLYS--VSSY 259
           A I+  + A   + F      +I+++   L+V  + PS W +  DI L+ ++    ++S 
Sbjct: 209 AKIMSTYPAAFTVSFLYIVSVSIVTSMIGLVVEKNNPSVWIIRFDITLITIVTMAIITSV 268

Query: 260 WHWVSSWLVH 269
           ++ + SW V 
Sbjct: 269 YYVIHSWTVR 278

Arabidopsis thaliana (taxid: 3702)

>sp|Q9M130|WTR29_ARATH WAT1-related protein At4g01440 OS=Arabidopsis thaliana GN=At4g01440 PE=2 SV=1

 Score =  124 bits (312), Expect = 7e-28,   Method: Compositional matrix adjust.
 Identities = 81/247 (32%), Positives = 133/247 (53%), Gaps = 5/247 (2%)

Query: 13  PSVGMVIVLLAQVSNMEVIKAAMSKGINKYVIIVYSDALSSLFFLFCSFLFHRSERPQLT 72
           P + MV++  A      ++K  +  G+N  VI  Y  A+S+LF    +F + R  RP LT
Sbjct: 10  PVIIMVMINSALGLANALVKKVLDGGVNHMVIATYRLAISTLFLAPIAFFWERKTRPTLT 69

Query: 73  FSILCSFFLLSVFGCS-SQIFSFVGIQYSSPTLSTAMLNLIPAFTFVLAIIFRLEKLNWE 131
            +IL   F  ++ G S +Q F  +G+ Y+S TL+ A +++ PA TFV+A+IFR+EKLN +
Sbjct: 70  LNILVQLFFSALVGASLTQYFFLLGLSYTSATLACAFISMTPAITFVMALIFRVEKLNMK 129

Query: 132 NKSSQAKSLGTFASIGGAFVVTFYKGPPL--IGEL-SHSGSPRRLLLSPQLSWILGGFFL 188
           +K+     +G    IGGA ++T YKG PL  + +L +H        + P+ +WI+G   L
Sbjct: 130 SKAGMGMVMGALICIGGALLLTMYKGVPLTKLRKLETHQLINNNHAMKPE-NWIIGCVLL 188

Query: 189 AAEAFMNSAWFILQALILRKFAAVLIIMFYLFFFNTILSTAFALIVVSEPSDWKLGLDIG 248
            A +    +W ++QA +  K+         L FF TI     +LI   + + W L   + 
Sbjct: 189 FAGSSCFGSWMLIQAKVNEKYPCQYSSTVVLSFFGTIQCALLSLIKSRDITAWILTDKLD 248

Query: 249 LVAVLYS 255
           +V ++Y+
Sbjct: 249 IVTIVYA 255

Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	332
255581160	356	Auxin-induced protein 5NG4, putative [Ri	0.768	0.716	0.639	4e-83
356502002	351	PREDICTED: auxin-induced protein 5NG4-li	0.731	0.692	0.553	1e-68
225424736	346	PREDICTED: auxin-induced protein 5NG4 [V	0.756	0.725	0.556	1e-68
356497781	351	PREDICTED: LOW QUALITY PROTEIN: auxin-in	0.728	0.689	0.551	7e-67
255581162	349	Auxin-induced protein 5NG4, putative [Ri	0.743	0.707	0.530	8e-63
224057230	355	predicted protein [Populus trichocarpa]	0.798	0.746	0.486	2e-62
356497783	347	PREDICTED: auxin-induced protein 5NG4-li	0.774	0.740	0.501	5e-62
388502250	352	unknown [Medicago truncatula]	0.731	0.690	0.528	3e-61
357486015	598	Auxin-induced protein 5NG4 [Medicago tru	0.731	0.406	0.528	4e-61
224099697	355	predicted protein [Populus trichocarpa]	0.789	0.738	0.490	2e-60

>gi|255581160|ref|XP_002531393.1| Auxin-induced protein 5NG4, putative [Ricinus communis] gi|223528986|gb|EEF30977.1| Auxin-induced protein 5NG4, putative [Ricinus communis]

 Score =  314 bits (804), Expect = 4e-83,   Method: Compositional matrix adjust.
 Identities = 163/255 (63%), Positives = 196/255 (76%)

Query: 1   MGVDMGSMRAALPSVGMVIVLLAQVSNMEVIKAAMSKGINKYVIIVYSDALSSLFFLFCS 60
           MG    ++R+ LP VGMV+ +LAQ SNMEV K A+S+GINKYVIIVYSDALS+L  L CS
Sbjct: 1   MGFMPCNIRSLLPFVGMVVAMLAQASNMEVTKLALSQGINKYVIIVYSDALSTLVLLPCS 60

Query: 61  FLFHRSERPQLTFSILCSFFLLSVFGCSSQIFSFVGIQYSSPTLSTAMLNLIPAFTFVLA 120
           F+ HRS+R  L FS+LC FFLLSVFG  +QI  +VG+QYSSPTL TAMLNLIPAFTF+LA
Sbjct: 61  FIIHRSDRTPLDFSLLCKFFLLSVFGWCAQICGYVGLQYSSPTLGTAMLNLIPAFTFILA 120

Query: 121 IIFRLEKLNWENKSSQAKSLGTFASIGGAFVVTFYKGPPLIGELSHSGSPRRLLLSPQLS 180
           IIFRLEKL+  +KSS AKSLGT  SI GAFVVTFY+GP + G  SH     +L  SPQ  
Sbjct: 121 IIFRLEKLDRRSKSSIAKSLGTIVSIAGAFVVTFYEGPTVFGIASHIKESHQLFHSPQFF 180

Query: 181 WILGGFFLAAEAFMNSAWFILQALILRKFAAVLIIMFYLFFFNTILSTAFALIVVSEPSD 240
           W++G  FLAAEA M+SAW+ILQ  IL+KF AVLII+ YL FFNT+LS  FALIVV + + 
Sbjct: 181 WMIGALFLAAEALMDSAWYILQTFILKKFPAVLIIICYLCFFNTVLSAIFALIVVEDRNS 240

Query: 241 WKLGLDIGLVAVLYS 255
           WK+  +IGL  +LY+
Sbjct: 241 WKIKPNIGLATILYT 255

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356502002|ref|XP_003519811.1| PREDICTED: auxin-induced protein 5NG4-like [Glycine max]

 Score =  266 bits (679), Expect = 1e-68,   Method: Compositional matrix adjust.
 Identities = 135/244 (55%), Positives = 177/244 (72%), Gaps = 1/244 (0%)

Query: 12  LPSVGMVIVLLAQVSNMEVIKAAMSKGINKYVIIVYSDALSSLFFLFCSFLFHRSERPQL 71
           LP +GMV+V+LAQ  +M VIK AMS GINKYV++VYS ALS++  L  +   HRSERP L
Sbjct: 12  LPFLGMVLVMLAQSGSMVVIKVAMSDGINKYVMVVYSLALSTILLLPFALFLHRSERPPL 71

Query: 72  TFSILCSFFLLSVFGCSSQIFSFVGIQYSSPTLSTAMLNLIPAFTFVLAIIFRLEKLNWE 131
           TFS LC FFLL++FG S QI ++VGI  SS TL++AMLNLIPAFTF+LA+IFR+E+++W 
Sbjct: 72  TFSALCCFFLLAIFGSSGQIMAYVGIDLSSATLASAMLNLIPAFTFILALIFRMEEVHWR 131

Query: 132 NKSSQAKSLGTFASIGGAFVVTFYKGPPLIGELSHSGSPRRLLLSPQLSWILGGFFLAAE 191
           + SSQAK LGT  SIGGAFVV  YKGPP+  +   S S  +L  S Q++WILGG F   +
Sbjct: 132 HSSSQAKVLGTLISIGGAFVVILYKGPPIF-KTHWSNSSNKLQFSQQINWILGGIFCVGD 190

Query: 192 AFMNSAWFILQALILRKFAAVLIIMFYLFFFNTILSTAFALIVVSEPSDWKLGLDIGLVA 251
           + + S W+I QA +  KF AV +I+F+   F+TI    FALI V +P++W+L  DIGL+ 
Sbjct: 191 SIVCSLWYIYQASVAHKFPAVTVIVFFQLLFSTIQCAVFALIAVPDPTEWELKFDIGLIG 250

Query: 252 VLYS 255
           +LY 
Sbjct: 251 ILYQ 254

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225424736|ref|XP_002266139.1| PREDICTED: auxin-induced protein 5NG4 [Vitis vinifera] gi|296086519|emb|CBI32108.3| unnamed protein product [Vitis vinifera]

 Score =  266 bits (679), Expect = 1e-68,   Method: Compositional matrix adjust.
 Identities = 142/255 (55%), Positives = 189/255 (74%), Gaps = 4/255 (1%)

Query: 1   MGVDMGSMRAALPSVGMVIVLLAQVSNMEVIKAAMSKGINKYVIIVYSDALSSLFFLFCS 60
           MGV MG++  +LP +GMVIV+  QV+NM V K AMS G++ +V+++YS+A+S++  L  S
Sbjct: 1   MGV-MGTV--SLPFLGMVIVVFTQVTNMIVSKMAMSNGLSSFVLVLYSNAISAVILLPLS 57

Query: 61  FLFHRSERPQLTFSILCSFFLLSVFGCSSQIFSFVGIQYSSPTLSTAMLNLIPAFTFVLA 120
            LFHRS RP LTFSILC FFLL++ GC +QIF + G+QYSSPTL +AMLNL+PAFTF+LA
Sbjct: 58  LLFHRSPRPPLTFSILCRFFLLALIGCFAQIFGYAGVQYSSPTLGSAMLNLVPAFTFILA 117

Query: 121 IIFRLEKLNWENKSSQAKSLGTFASIGGAFVVTFYKGPPLIGELSHSGSPRRLLLSPQLS 180
           +I R+EKL  +  SS AKS+G   S+ GAFVVTFYKGPP++   S S S  + + S Q  
Sbjct: 118 VICRMEKLELKKSSSLAKSVGALVSVAGAFVVTFYKGPPIMFSSSFSDSSNQ-IFSSQSH 176

Query: 181 WILGGFFLAAEAFMNSAWFILQALILRKFAAVLIIMFYLFFFNTILSTAFALIVVSEPSD 240
           W+LGGF LA E+ + S W+ILQA IL+K  AVL I F+  FF +I+S A +L+   +PS 
Sbjct: 177 WVLGGFLLADESLLASMWYILQATILKKHPAVLTITFFYCFFISIISLAISLVAERDPSA 236

Query: 241 WKLGLDIGLVAVLYS 255
           W+L LD+GL+AVLYS
Sbjct: 237 WRLKLDVGLLAVLYS 251

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356497781|ref|XP_003517736.1| PREDICTED: LOW QUALITY PROTEIN: auxin-induced protein 5NG4-like [Glycine max]

 Score =  260 bits (664), Expect = 7e-67,   Method: Compositional matrix adjust.
 Identities = 134/243 (55%), Positives = 176/243 (72%), Gaps = 1/243 (0%)

Query: 13  PSVGMVIVLLAQVSNMEVIKAAMSKGINKYVIIVYSDALSSLFFLFCSFLFHRSERPQLT 72
           P +GMV+ +LAQ  +M VIK AM+ GINKYV++VYS ALS++  L  +   HRSERP LT
Sbjct: 13  PFLGMVMAMLAQSGSMVVIKVAMTDGINKYVMVVYSLALSTILLLPFALFLHRSERPPLT 72

Query: 73  FSILCSFFLLSVFGCSSQIFSFVGIQYSSPTLSTAMLNLIPAFTFVLAIIFRLEKLNWEN 132
           FS LCSFFLL+ FG S QI ++VGI  SSPTL++AMLNLIPAFTF+LA+IFR+E+++W++
Sbjct: 73  FSALCSFFLLAFFGSSGQIMAYVGIDLSSPTLASAMLNLIPAFTFILALIFRMEEVHWKH 132

Query: 133 KSSQAKSLGTFASIGGAFVVTFYKGPPLIGELSHSGSPRRLLLSPQLSWILGGFFLAAEA 192
            SSQAK LGT  SI GAFVV  YKGPP+  +   S S  + L S QL+WILGG F A ++
Sbjct: 133 SSSQAKFLGTIVSIAGAFVVILYKGPPIF-KTHLSNSSNKFLFSQQLNWILGGMFCAGDS 191

Query: 193 FMNSAWFILQALILRKFAAVLIIMFYLFFFNTILSTAFALIVVSEPSDWKLGLDIGLVAV 252
            + S W+I QA +  K+ AV  I+F+   F+TI    FALIVV   ++W+L LDIGL+ +
Sbjct: 192 IVCSLWYIYQASVAYKYPAVTTIVFFQLLFSTIQCGVFALIVVQXSNEWELKLDIGLIGI 251

Query: 253 LYS 255
           +Y 
Sbjct: 252 VYQ 254

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255581162|ref|XP_002531394.1| Auxin-induced protein 5NG4, putative [Ricinus communis] gi|223528987|gb|EEF30978.1| Auxin-induced protein 5NG4, putative [Ricinus communis]

 Score =  246 bits (629), Expect = 8e-63,   Method: Compositional matrix adjust.
 Identities = 132/249 (53%), Positives = 173/249 (69%), Gaps = 2/249 (0%)

Query: 7   SMRAALPSVGMVIVLLAQVSNMEVIKAAMSKGINKYVIIVYSDALSSLFFLFCSFLFHRS 66
            M+ ALP VGMVI   AQV  M + K AMSKG++ ++ + YS+AL+SL  L  S L  R+
Sbjct: 2   GMKVALPFVGMVIAECAQVGLMIISKVAMSKGMSSFIFVCYSNALASLILLPFSLLHRRT 61

Query: 67  ERPQLTFSILCSFFLLSVFGCSSQIFSFVGIQYSSPTLSTAMLNLIPAFTFVLAIIFRLE 126
           ERP LTFSI+C FFLL +FGC +Q F + GI  SSPTL TAMLNL+P  TF+LA+ FR+E
Sbjct: 62  ERPPLTFSIVCGFFLLGLFGCLAQFFGYAGINLSSPTLGTAMLNLVPGLTFILAVAFRME 121

Query: 127 KLNWENKSSQAKSLGTFASIGGAFVVTFYKGPPLIGELSHSGSPRRLLLSPQLSWILGGF 186
           KL+    SS AKS+GT  S+GGAF++T+YKGP ++  L+ S +    LL+   +WI+GG 
Sbjct: 122 KLDGRTSSSLAKSMGTIISVGGAFILTYYKGPLVL--LTPSLNSSHQLLTQPSNWIIGGL 179

Query: 187 FLAAEAFMNSAWFILQALILRKFAAVLIIMFYLFFFNTILSTAFALIVVSEPSDWKLGLD 246
            LAA+  M SAW I+QALIL+ + A LII+F+  FF TILS    L+V  +PS W L  +
Sbjct: 180 LLAADCVMTSAWIIIQALILKIYPAELIIVFFYCFFVTILSAIVCLVVERDPSAWSLIPN 239

Query: 247 IGLVAVLYS 255
           I LV+VLYS
Sbjct: 240 IRLVSVLYS 248

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224057230|ref|XP_002299184.1| predicted protein [Populus trichocarpa] gi|222846442|gb|EEE83989.1| predicted protein [Populus trichocarpa]

 Score =  245 bits (626), Expect = 2e-62,   Method: Compositional matrix adjust.
 Identities = 131/269 (48%), Positives = 183/269 (68%), Gaps = 4/269 (1%)

Query: 5   MGSMRAALPSVGMVIVLLAQVSNMEVIKAAMSKGINKYVIIVYSDALSSLFFLFCSFLFH 64
           M    A LP VGMV+   AQ   M + KAAMS G++ +V ++YS+A++ L  L  SFLFH
Sbjct: 1   MARKVAVLPIVGMVMAECAQAGRMILGKAAMSNGMSSFVFVLYSNAIACLILLPSSFLFH 60

Query: 65  RS-ERPQLTFSILCSFFLLSVFGCSSQIFSFVGIQYSSPTLSTAMLNLIPAFTFVLAIIF 123
           RS ERP LT SI+  FFLL +FGC  Q F + GI  SSPTL TAMLNL+P  TF+LAIIF
Sbjct: 61  RSSERPPLTLSIVSGFFLLGLFGCLGQSFCYAGINLSSPTLGTAMLNLVPGLTFILAIIF 120

Query: 124 RLEKLNWENKSSQAKSLGTFASIGGAFVVTFYKGPPLIGELSHSGSPRRLLLSPQLSWIL 183
           R+E ++W++ S+ AKS+GT  SIGGAF+VT YKGP L+  L         +L  Q +W+L
Sbjct: 121 RMENVDWKSYSTLAKSMGTIVSIGGAFIVTCYKGPLLLKALPSVTKSSHQVLLQQSNWVL 180

Query: 184 GGFFLAAEAFMNSAWFILQALILRKFAAVLIIMFYLFFFNTILSTAFALIVVSEPSDWKL 243
           GG  +A +    S+W I+QALIL+K++A LI++F+ FFF+TILS+  ++++  +PS W L
Sbjct: 181 GGLLMAVDCATASSWLIVQALILKKYSAKLIVVFFHFFFSTILSSIVSVVMERDPSAWSL 240

Query: 244 GLDIGLVAVLYS---VSSYWHWVSSWLVH 269
             +I L+AVL+S    +++   V++W VH
Sbjct: 241 NSNIRLIAVLFSGILGNAFEIGVTAWCVH 269

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356497783|ref|XP_003517737.1| PREDICTED: auxin-induced protein 5NG4-like [Glycine max]

 Score =  244 bits (622), Expect = 5e-62,   Method: Compositional matrix adjust.
 Identities = 131/261 (50%), Positives = 181/261 (69%), Gaps = 4/261 (1%)

Query: 12  LPSVGMVIVLLAQVSNMEVIKAAMSKGINKYVIIVYSDALSSLFFLFCSFLFHRSERPQL 71
           LP +GM++ +L Q  +M VIK AM+ G+NKYV++VYS ALSS   L      HRSE P L
Sbjct: 12  LPFLGMLMAMLTQSGSMVVIKFAMTDGMNKYVMVVYSMALSSSILLPFVLFLHRSELPLL 71

Query: 72  TFSILCSFFLLSVFGCSSQIFSFVGIQYSSPTLSTAMLNLIPAFTFVLAIIFRLEKLNWE 131
           T   L SFFLL++F  S+ I ++VGI+ SSPTL++A+LN+IPAFTFVLA+IFR+E+++W 
Sbjct: 72  TVPALGSFFLLALFASSAHIMAYVGIELSSPTLASAILNVIPAFTFVLALIFRMEEVHWR 131

Query: 132 NKSSQAKSLGTFASIGGAFVVTFYKGPPLIGELSHSGSPRRLLLSPQLSWILGGFFLAAE 191
             SSQAK LGT  SIGGAFVV  YKGPP+    S S +  +L  S Q +WILGG FL A+
Sbjct: 132 YFSSQAKVLGTIVSIGGAFVVILYKGPPIFRTHS-SYTSNKLQFSAQPNWILGGIFLVAD 190

Query: 192 AFMNSAWFILQALILRKFAAVLIIMFYLFFFNTILSTAFALIVVSEPSDWKLGLDIGLVA 251
           +F++S W+I QA + +K+ AV +I+F+ F F+TI    FALI V +P++W+L  D GL  
Sbjct: 191 SFLSSMWYIYQASVAKKYPAVTVIVFFQFLFSTIQCGVFALIAVRDPTEWELKFDRGLSV 250

Query: 252 VLYS---VSSYWHWVSSWLVH 269
           +LY     +   + +++W VH
Sbjct: 251 ILYQAIVATMLRYTLTTWCVH 271

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388502250|gb|AFK39191.1| unknown [Medicago truncatula]

 Score =  241 bits (616), Expect = 3e-61,   Method: Compositional matrix adjust.
 Identities = 129/244 (52%), Positives = 179/244 (73%), Gaps = 1/244 (0%)

Query: 12  LPSVGMVIVLLAQVSNMEVIKAAMSKGINKYVIIVYSDALSSLFFLFCSFLFHRSERPQL 71
           LP VGM+I +LAQ  +M VIK AM  G+NKYV++VYS  LSS+  L  +   +RS+RP L
Sbjct: 14  LPFVGMIISVLAQSGSMVVIKFAMKDGMNKYVMVVYSMGLSSILLLPLALFINRSQRPPL 73

Query: 72  TFSILCSFFLLSVFGCSSQIFSFVGIQYSSPTLSTAMLNLIPAFTFVLAIIFRLEKLNWE 131
           TFS L SFFLL++ G S+QI ++ GI+ SSPTL++AMLNLIPAFTFVLA+IFR+E++ W 
Sbjct: 74  TFSALWSFFLLALIGSSAQIMTYGGIELSSPTLASAMLNLIPAFTFVLALIFRMERIYWR 133

Query: 132 NKSSQAKSLGTFASIGGAFVVTFYKGPPLIGELSHSGSPRRLLLSPQLSWILGGFFLAAE 191
           + SSQAK++GT  S+ GAFVV  YKGPP++ ++  S S   L  SP L+WILGGF  A +
Sbjct: 134 HFSSQAKAIGTIVSMAGAFVVILYKGPPIL-KIHSSISYNTLQFSPNLNWILGGFLCAGD 192

Query: 192 AFMNSAWFILQALILRKFAAVLIIMFYLFFFNTILSTAFALIVVSEPSDWKLGLDIGLVA 251
           + ++S W+I Q  + +K+ AV++I+F+   F TI +  +ALIVV +PS W+L LD+GL+ 
Sbjct: 193 SLLSSMWYIYQVSVTKKYPAVIVIVFFQVVFITIQTGVYALIVVRDPSAWELKLDMGLIV 252

Query: 252 VLYS 255
           +LY 
Sbjct: 253 ILYQ 256

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357486015|ref|XP_003613295.1| Auxin-induced protein 5NG4 [Medicago truncatula] gi|355514630|gb|AES96253.1| Auxin-induced protein 5NG4 [Medicago truncatula]

 Score =  241 bits (615), Expect = 4e-61,   Method: Compositional matrix adjust.
 Identities = 129/244 (52%), Positives = 179/244 (73%), Gaps = 1/244 (0%)

Query: 12  LPSVGMVIVLLAQVSNMEVIKAAMSKGINKYVIIVYSDALSSLFFLFCSFLFHRSERPQL 71
           LP VGM+I +LAQ  +M VIK AM  G+NKYV++VYS  LSS+  L  +   +RS+RP L
Sbjct: 260 LPFVGMIISVLAQSGSMVVIKFAMKDGMNKYVMVVYSMGLSSILLLPLALFINRSQRPPL 319

Query: 72  TFSILCSFFLLSVFGCSSQIFSFVGIQYSSPTLSTAMLNLIPAFTFVLAIIFRLEKLNWE 131
           TFS L SFFLL++ G S+QI ++ GI+ SSPTL++AMLNLIPAFTFVLA+IFR+E++ W 
Sbjct: 320 TFSALWSFFLLALIGSSAQIMTYGGIELSSPTLASAMLNLIPAFTFVLALIFRMERIYWR 379

Query: 132 NKSSQAKSLGTFASIGGAFVVTFYKGPPLIGELSHSGSPRRLLLSPQLSWILGGFFLAAE 191
           + SSQAK++GT  S+ GAFVV  YKGPP++ ++  S S   L  SP L+WILGGF  A +
Sbjct: 380 HFSSQAKAIGTIVSMAGAFVVILYKGPPIL-KIHSSISYNTLQFSPNLNWILGGFLCAGD 438

Query: 192 AFMNSAWFILQALILRKFAAVLIIMFYLFFFNTILSTAFALIVVSEPSDWKLGLDIGLVA 251
           + ++S W+I Q  + +K+ AV++I+F+   F TI +  +ALIVV +PS W+L LD+GL+ 
Sbjct: 439 SLLSSMWYIYQVSVTKKYPAVIVIVFFQVVFITIQTGVYALIVVRDPSAWELKLDMGLIV 498

Query: 252 VLYS 255
           +LY 
Sbjct: 499 ILYQ 502

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224099697|ref|XP_002311582.1| predicted protein [Populus trichocarpa] gi|222851402|gb|EEE88949.1| predicted protein [Populus trichocarpa]

 Score =  239 bits (609), Expect = 2e-60,   Method: Compositional matrix adjust.
 Identities = 133/271 (49%), Positives = 176/271 (64%), Gaps = 9/271 (3%)

Query: 7   SMRAALPSVGMVIVLLAQVSNMEVIKAAMSKGINKYVIIVYSDALSSLFFLFCSFLFHRS 66
            ++AA P VGMV+   AQV  M + KAAMS G+  ++ ++YS+AL+SL  L  SF  HRS
Sbjct: 2   GLKAAAPFVGMVMAECAQVGLMILSKAAMSDGMTNFIFVLYSNALASLILLPSSFFLHRS 61

Query: 67  ERPQLTFSILCSFFLLSVFGCS-----SQIFSFVGIQYSSPTLSTAMLNLIPAFTFVLAI 121
           ERP LTF ILC FFLL +FG +       IF + GI  SS TL TAMLNLIP  TF+LA+
Sbjct: 62  ERPPLTFPILCGFFLLGLFGYAILIYFDFIFGYAGINLSSATLGTAMLNLIPGLTFILAV 121

Query: 122 IFRLEKLNWENKSSQAKSLGTFASIGGAFVVTFYKGPPLIGELSHSGSPRRLLLSPQLSW 181
            FR+EKL+W++ S+  KS GT  S+ GAF+V +YKGPPL+   S S  P   LLS Q +W
Sbjct: 122 AFRMEKLDWKSSSALVKSTGTIVSVAGAFIVCYYKGPPLLMAPSTSNLPHE-LLSQQQNW 180

Query: 182 ILGGFFLAAEAFMNSAWFILQALILRKFAAVLIIMFYLFFFNTILSTAFALIVVSEPSDW 241
           I+GG  LA +  M SAW I+QALIL+K+ A LI++F+  F  TILST   L +  +P  W
Sbjct: 181 IIGGLLLAVDCVMASAWLIIQALILKKYPAELIVVFFYCFSVTILSTIVCLFMERDPGAW 240

Query: 242 KLGLDIGLVAVLYS---VSSYWHWVSSWLVH 269
            L   +  +AV+YS    S++   VS+W +H
Sbjct: 241 SLKPTVRWIAVVYSGVFGSAFQVGVSTWCLH 271

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	332
TAIR|locus:2091363	367	UMAMIT41 "AT3G28050" [Arabidop	0.719	0.651	0.392	3.9e-37
TAIR|locus:2091368	355	UMAMIT44 "AT3G28130" [Arabidop	0.728	0.681	0.350	4.1e-33
TAIR|locus:2130344	347	UMAMIT38 "AT4G15540" [Arabidop	0.683	0.654	0.326	6.9e-31
TAIR|locus:2173737	339	UMAMIT42 "Usually multiple aci	0.662	0.648	0.351	1.1e-30
TAIR|locus:2173752	370	UMAMIT37 "AT5G40230" [Arabidop	0.731	0.656	0.309	1.6e-29
TAIR|locus:2091383	360	UMAMIT46 "AT3G28070" [Arabidop	0.728	0.672	0.338	3.4e-29
TAIR|locus:2091338	353	UMAMIT45 "AT3G28100" [Arabidop	0.728	0.685	0.330	1.5e-28
TAIR|locus:2169414	402	UMAMIT9 "Usually multiple acid	0.680	0.562	0.302	1.9e-28
TAIR|locus:2091393	358	UMAMIT47 "AT3G28080" [Arabidop	0.662	0.614	0.336	6.4e-28
TAIR|locus:2049847	380	UMAMIT12 "Usually multiple aci	0.719	0.628	0.317	6.4e-28

TAIR|locus:2091363 UMAMIT41 "AT3G28050" [Arabidopsis thaliana (taxid:3702)]

 Score = 399 (145.5 bits), Expect = 3.9e-37, P = 3.9e-37
 Identities = 97/247 (39%), Positives = 132/247 (53%)

Query:     9 RAALPSVGMVIVLLAQVSNMEVIKAAMSKGINKYVIIVYSDAXXXXXXXXXXXXXHRSER 68
             R  LP   +VI+  A V    + KAA  KG++ +V IVYS                RS  
Sbjct:     8 REVLPVTALVIMECANVGLNTLFKAATLKGMSFHVFIVYSYGLAALLLLPSLFCSFRSRT 67

Query:    69 -PQLTFSILCSFFLLSVFGCSSQIFSFVGIQYSSPTLSTAMLNLIPAFTFVLAIIFRLEK 127
              P + FSIL    LL + GC S I  + GI YSSPTL++A+ NL PAFTF+LA++FR+E 
Sbjct:    68 LPPMNFSILYKIVLLGIIGCCSNIMGYTGINYSSPTLASAISNLTPAFTFLLAVVFRMES 127

Query:   128 LNWENKSSQAKSLGTFASIGGAFVVTFYKGPPLIGEXXXXXXXXXXXXXXXXXWILGGFF 187
             ++++  SS AK LGT  SIGGAF+VT Y GP +I +                 WILG  F
Sbjct:   128 VSFKRTSSVAKMLGTVVSIGGAFIVTLYNGPVVIAKSPPSVSLRSQSTNPN--WILGAGF 185

Query:   188 LAAEAFMNSAWFILQALILRKFAAVL-IIMFYLF--FFNTILSTAFALIVVSEPSDWKLG 244
             LA E F    W+I+Q  I+R++ A   ++ FY     F T L T F     ++   WK+ 
Sbjct:   186 LAVEYFCVPLWYIVQTQIMREYPAEFTVVCFYSIGVSFWTALVTLFT--EGNDLGAWKIK 243

Query:   245 LDIGLVA 251
              +I LV+
Sbjct:   244 PNIALVS 250

GO:0008150 "biological_process" evidence=ND

GO:0016020 "membrane" evidence=IEA;ISS

TAIR|locus:2091368 UMAMIT44 "AT3G28130" [Arabidopsis thaliana (taxid:3702)]

 Score = 361 (132.1 bits), Expect = 4.1e-33, P = 4.1e-33
 Identities = 87/248 (35%), Positives = 128/248 (51%)

Query:     9 RAALPSVGMVIVLLAQVSNMEVIKAAMSKGINKYVIIVYSDAXXXXXXXXXXXXXHRSER 68
             R A+    M+      V+   + KAA SKG+N Y  ++YS               +RS  
Sbjct:     9 RDAVLLTAMLATETGNVAMNTLFKAATSKGLNSYTFLIYSYLIGSIVLLPSHIFSYRSRS 68

Query:    69 -PQLTFSILCSFFLLSVFGCSSQIFSFVGIQYSSPTLSTAMLNLIPAFTFVLAIIFRLEK 127
              P L+ SILC   +L + G +  I  F+GI+YS+PTL++A+ N+ PA TF+LAIIFR+EK
Sbjct:    69 LPSLSLSILCKIGVLGLLGSTYLITGFIGIEYSNPTLASAISNINPAITFILAIIFRMEK 128

Query:   128 LNWENKSSQAKSLGTFASIGGAFVVTFYKGP----PLIGEXXXXXXXXXXXXXXXXXWIL 183
              +++ KSS AK +GT  S+ GA VV  Y GP    P                     WI+
Sbjct:   129 ASFKEKSSVAKMVGTIVSLVGALVVVLYHGPRVFTPSSPPFPQLRQLLLPLSSSNSDWII 188

Query:   184 GGFFLAAEAFMNSAWFILQALILRKFAAVLIIMFYLFFFNTILSTAFALIVV-SEPSDWK 242
             GG  LA +  +    FILQA I++ + A   + F+ F   +IL++   ++   + PS W 
Sbjct:   189 GGCLLAIKDTLVPVAFILQAHIMKLYPAPFTVSFFYFLIASILTSLIGIVAEKNNPSIWI 248

Query:   243 LGLDIGLV 250
             +  DI LV
Sbjct:   249 IHFDITLV 256

GO:0008150 "biological_process" evidence=ND

GO:0009507 "chloroplast" evidence=ISM

GO:0016020 "membrane" evidence=IEA

TAIR|locus:2130344 UMAMIT38 "AT4G15540" [Arabidopsis thaliana (taxid:3702)]

 Score = 340 (124.7 bits), Expect = 6.9e-31, P = 6.9e-31
 Identities = 77/236 (32%), Positives = 119/236 (50%)

Query:     9 RAALPSVGMVIVLLAQVSNMEVIKAAMSKGINKYVIIVYSDAXXXXXXXXXXXXXHRSER 68
             R  +P   M+ +    V +  + KAA  +G + YV + Y+                RS  
Sbjct:    13 RDVVPFTAMIAIECTTVGSSILYKAATLRGFSFYVFVFYAYVGATLVLLLLSLIFGRSRS 72

Query:    69 -PQLTFSILCSFFLLSVFGCSSQIFSFVGIQYSSPTLSTAMLNLIPAFTFVLAIIFRLEK 127
              P    S+    FLL++ G +S++    GI+YSSPTLS+A+ NL PAFTF+LAI FR+E+
Sbjct:    73 LPTAKSSLFFKIFLLALLGLTSRVAGCKGIEYSSPTLSSAISNLTPAFTFILAIFFRMEQ 132

Query:   128 LNWENKSSQAKSLGTFASIGGAFVVTFYKGPPLIGEXXXXXXXXXXXXXXXXXWILGGFF 187
             +   + ++QAK +GT  SI GA V+  YKGP L+                   WI+GG  
Sbjct:   133 VMLRSSATQAKIIGTIVSISGALVIVLYKGPKLL--------VAASFTSFESSWIIGGLL 184

Query:   188 LAAEAFMNSAWFILQALILRKFAAVLIIMFYLFFFNTILSTAFALIVVSEPSDWKL 243
             L  +  + S WFILQ  I+  +   + ++F      T++S    L+V  + + W+L
Sbjct:   185 LGLQFLLLSVWFILQTHIMEIYPEEIAVVFCYNLCATLISGTVCLLVEKDLNSWQL 240

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

GO:0016020 "membrane" evidence=IEA

TAIR|locus:2173737 UMAMIT42 "Usually multiple acids move in and out Transporters 42" [Arabidopsis thaliana (taxid:3702)]

 Score = 338 (124.0 bits), Expect = 1.1e-30, P = 1.1e-30
 Identities = 83/236 (35%), Positives = 125/236 (52%)

Query:    17 MVIVLLAQVSNMEVIKAAMSKGINKYVIIVYSDAXXXXXXXXXXXXXHRSER-PQLTFSI 75
             MV+   + V    ++KAA SKG++ +V++VYS                RS   P LTFSI
Sbjct:    17 MVVTEFSNVGVNTLVKAATSKGLSPFVVLVYSYTFGSLLLLPLTFFSFRSRSLPPLTFSI 76

Query:    76 LCSFFLLSVFGCSSQIFSFVGIQYSSPTLSTAMLNLIPAFTFVLAIIFRLEKLNWENKSS 135
             LC+  +L +   + QI  + GI+YSSPTLS+AM N+ PAFTF+LA++FR+E ++   KSS
Sbjct:    77 LCNMGILGLIASAFQILGYNGIKYSSPTLSSAMSNVNPAFTFILAVVFRMENISLGKKSS 136

Query:   136 QAKSLGTFASIGGAFVVTFYKGPPLIGEXXXXXXXXXXXXXXXXXWILGGFFLAAEAFMN 195
              AK LGT  SI GA VVT Y GP L+                   WI+GG  LA +  + 
Sbjct:   137 VAKVLGTILSIIGALVVTLYHGPMLMSSHSD--------------WIIGGGLLALQYILV 182

Query:   196 SAWFILQALILRKF-AAVLIIMFYLFFFNTILSTAFALIVVSEPSDWKLGLDIGLV 250
             S  +++ A  + ++ +AV++ + +      + +    L     P  W +  DI L+
Sbjct:   183 SVSYLVMAHTMGRYPSAVVVTLVHNVCIAVVCAFVSLLAEKDNPKAWVIRFDITLI 238

GO:0016020 "membrane" evidence=IEA

GO:0006863 "purine nucleobase transport" evidence=RCA

TAIR|locus:2173752 UMAMIT37 "AT5G40230" [Arabidopsis thaliana (taxid:3702)]

 Score = 327 (120.2 bits), Expect = 1.6e-29, P = 1.6e-29
 Identities = 77/249 (30%), Positives = 122/249 (48%)

Query:     9 RAALPSVGMVIVLLAQVSNMEVIKAAMSKGINKYVIIVYSDAXXXXXXXXXXXXXHRSER 68
             R  +P   MV V    V +  + KAA  +G++ YV + Y+                RS+R
Sbjct:    17 RDVVPFTAMVAVECVTVGSNTLFKAATLRGLSFYVFVFYTYVVATLVLLPLSLIFGRSKR 76

Query:    69 -PQLTFSILCSFFLLSVFGCSSQIFSFVGIQYSSPTLSTAMLNLIPAFTFVLAIIFRLEK 127
              P     +  + FLL++ G  S I    GI+YSSPTL++A+ NL PAFTF LA+IFR+E+
Sbjct:    77 LPSAKTPVFFNIFLLALVGFMSLIVGCKGIEYSSPTLASAISNLTPAFTFTLAVIFRMEQ 136

Query:   128 LNWENKSSQAKSLGTFASIGGAFVVTFYKGPPLIGEXXXX-----XXXXXXXXXXXXXWI 182
             +   + ++QAK +GT  SI GA VV  YKGP ++ +                      WI
Sbjct:   137 IVLRSSATQAKIIGTIVSISGALVVILYKGPKVLTDASLTPPSPTISLYQHLTSFDSSWI 196

Query:   183 LGGFFLAAEAFMNSAWFILQALILRKFAAVLIIMFYLFFFNTILSTAFALIVVSEPSDWK 242
             +GG  LA +  + S W+ILQ  ++  +   + ++F      T++S    L    + + + 
Sbjct:   197 IGGLLLATQYLLVSVWYILQTRVMELYPEEITVVFLYNLCATLISAPVCLFAEKDLNSFI 256

Query:   243 LGLDIGLVA 251
             L   + L +
Sbjct:   257 LKPGVSLAS 265

GO:0003674 "molecular_function" evidence=ND

GO:0016020 "membrane" evidence=IEA;ISS

TAIR|locus:2091383 UMAMIT46 "AT3G28070" [Arabidopsis thaliana (taxid:3702)]

 Score = 324 (119.1 bits), Expect = 3.4e-29, P = 3.4e-29
 Identities = 84/248 (33%), Positives = 123/248 (49%)

Query:     9 RAALPSVGMVIVLLAQVSNMEVIKAAMSKGINKYVIIVYSDAXXXXXXXXXXXXXHRSER 68
             R A+    M++V  + V    + K A SKG+N Y  + YS               +RS  
Sbjct:    13 REAVFLTAMLVVETSVVGISTLFKFATSKGLNIYPFLGYSYLLASLLLLPSLFFTNRSSS 72

Query:    69 -PQLTFSILCSFFLLSVFGCSSQIFSFVGIQYSSPTLSTAMLNLIPAFTFVLAIIFRLEK 127
              P L+ SIL    LL   G    I  ++GI+YSSPTL++A+ N+ PA TF+LAIIFR+EK
Sbjct:    73 LPPLSVSILSKIGLLGFLGSMYVITGYIGIEYSSPTLASAINNITPALTFILAIIFRMEK 132

Query:   128 LNWENKSSQAKSLGTFASIGGAFVVTFYKGPPLIGEXX----XXXXXXXXXXXXXXXWIL 183
             ++++ +SS AK +GT  S+ GA VV FY GP +                        W++
Sbjct:   133 VSFKERSSLAKLMGTILSLIGALVVIFYHGPRVFLASSPPYVNFRQFSPPLSSSNSDWLI 192

Query:   184 GGFFLAAEAFMNSAWFILQALILRKFAAVLIIMF-YLFFFNTILSTAFALIVVSEPSDWK 242
             GG  L  +    S  FILQA I+  + A   + F Y    + + ST   ++  + PS W 
Sbjct:   193 GGALLTMQGIFVSVSFILQAHIMSVYPAAFRVSFLYTVCVSIVTSTIGLVVEKNNPSVWI 252

Query:   243 LGLDIGLV 250
             +  DI L+
Sbjct:   253 IHFDITLI 260

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

GO:0009507 "chloroplast" evidence=ISM

GO:0016020 "membrane" evidence=IEA;ISS

TAIR|locus:2091338 UMAMIT45 "AT3G28100" [Arabidopsis thaliana (taxid:3702)]

 Score = 318 (117.0 bits), Expect = 1.5e-28, P = 1.5e-28
 Identities = 82/248 (33%), Positives = 119/248 (47%)

Query:     9 RAALPSVGMVIVLLAQVSNMEVIKAAMSKGINKYVIIVYSDAXXXXXXXXXXXXXHRSER 68
             R A+    M+      V    + K A SKG+N Y  + YS                RS  
Sbjct:    10 REAVFLTAMLATETGVVGISTLFKVATSKGLNLYAFLGYSYLLASLLLLPSLFFTDRSRS 69

Query:    69 -PQLTFSILCSFFLLSVFGCSSQIFSFVGIQYSSPTLSTAMLNLIPAFTFVLAIIFRLEK 127
              P L+ SIL    LL + G    I  ++GI+YSSPTL++A+ N+ PA TF+LAIIFR+EK
Sbjct:    70 LPPLSLSILSKIGLLGLLGSMYVITGYIGIEYSSPTLASAISNITPALTFILAIIFRMEK 129

Query:   128 LNWENKSSQAKSLGTFASIGGAFVVTFYKGPPLIGEXX----XXXXXXXXXXXXXXXWIL 183
             ++++ +SS AK +GT  S+ GA VV  Y GP +                        W++
Sbjct:   130 VSFKERSSVAKVMGTILSLIGALVVVLYHGPRVFVASSPPYINFRQLSPPLSSSNSDWLI 189

Query:   184 GGFFLAAEAFMNSAWFILQALILRKFAAVLIIMFYLFFFNTILSTAFALIVV-SEPSDWK 242
             GG  L       S  FILQA I+  + A   + F      +I+++   L+V  + PS W 
Sbjct:   190 GGALLTIRDIFVSVSFILQAKIMSTYPAAFTVSFLYIVSVSIVTSMIGLVVEKNNPSVWI 249

Query:   243 LGLDIGLV 250
             +  DI L+
Sbjct:   250 IRFDITLI 257

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

GO:0016020 "membrane" evidence=IEA

TAIR|locus:2169414 UMAMIT9 "Usually multiple acids move in and out Transporters 9" [Arabidopsis thaliana (taxid:3702)]

 Score = 317 (116.6 bits), Expect = 1.9e-28, P = 1.9e-28
 Identities = 72/238 (30%), Positives = 122/238 (51%)

Query:    26 SNMEVI-KAAMSKGINKYVIIVYSDAXXXXXXXXXXXXXHRSERPQLTFSILCSFFLLSV 84
             + M +I K +++ G++ YV++VY  A              R  +P++TFSI    F+L +
Sbjct:    30 AGMNIITKISLNTGMSHYVLVVYRHAIATAVIAPFAFFFERKAQPKITFSIFMQLFILGL 89

Query:    85 FG-CSSQIFSFVGIQYSSPTLSTAMLNLIPAFTFVLAIIFRLEKLNWENKSSQAKSLGTF 143
              G    Q F ++G++Y+SPT S AM N++PA TF+LA++FR+E L+ +    QAK  GT 
Sbjct:    90 LGPVIDQNFYYMGLKYTSPTFSCAMSNMLPAMTFILAVLFRMEMLDLKKLWCQAKIAGTV 149

Query:   144 ASIGGAFVVTFYKGPPL---------IGEXXXXXXXXXXXXXXXXXWILGGFFLAAEAFM 194
              ++ GA ++T YKGP +         I +                 ++ G   L      
Sbjct:   150 VTVAGAMLMTIYKGPIVELFWTKYMHIQDSSHANTTSSKNSSSDKEFLKGSILLIFATLA 209

Query:   195 NSAWFILQALILRKFAA-VLIIMFYLFFFNTILSTAFALIVVSEPSDWKLGLDIGLVA 251
              ++ F+LQA IL+ +A   L +   + F  T+ + A   ++   PS W++G D+ L+A
Sbjct:   210 WASLFVLQAKILKTYAKHQLSLTTLICFIGTLQAVAVTFVMEHNPSAWRIGWDMNLLA 267

GO:0009507 "chloroplast" evidence=ISM

GO:0016020 "membrane" evidence=IEA;ISS

TAIR|locus:2091393 UMAMIT47 "AT3G28080" [Arabidopsis thaliana (taxid:3702)]

 Score = 312 (114.9 bits), Expect = 6.4e-28, P = 6.4e-28
 Identities = 76/226 (33%), Positives = 115/226 (50%)

Query:    30 VIKAAMSKGINKYVIIVYSDAXXXXXXXXXXXXXHRSER-PQLTFSILCSFFLLSVFGCS 88
             + K A SKG+N Y  + YS               +RS   P L+ SIL    LL   G  
Sbjct:    31 LFKVATSKGLNIYPFLSYSYLLASLLLLPSLFFTNRSRSLPPLSASILSKIGLLGFLGSM 90

Query:    89 SQIFSFVGIQYSSPTLSTAMLNLIPAFTFVLAIIFRLEKLNWENKSSQAKSLGTFASIGG 148
               I   +GI+YS+PTL++A+ N++PA TF+LA+IFR+EK++++ +SS AK +GT  S+ G
Sbjct:    91 YVITGGIGIEYSNPTLASAIGNIVPALTFILAVIFRMEKVSFKERSSVAKVMGTILSLIG 150

Query:   149 AFVVTFYKGPPLIGEXX----XXXXXXXXXXXXXXXWILGGFFLAAEAFMNSAWFILQAL 204
             AFVV FY GP +                        W++GG  L  +    S  FILQ  
Sbjct:   151 AFVVIFYHGPRVFVASSPPYLNFRQLSPPLSSSKSDWLIGGAILTIQGIFVSVSFILQTH 210

Query:   205 ILRKFA-AVLIIMFYLFFFNTILSTAFALIVVSEPSDWKLGLDIGL 249
             I+R++  A  + + Y+   + + S    ++  + PS W +  DI L
Sbjct:   211 IMREYPEAFTVSILYILCISIVTSMIGLVVEKNNPSIWIIHFDITL 256

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

GO:0009507 "chloroplast" evidence=ISM

GO:0016020 "membrane" evidence=IEA

GO:0019761 "glucosinolate biosynthetic process" evidence=RCA

TAIR|locus:2049847 UMAMIT12 "Usually multiple acids move in and out Transporters 12" [Arabidopsis thaliana (taxid:3702)]

 Score = 312 (114.9 bits), Expect = 6.4e-28, P = 6.4e-28
 Identities = 79/249 (31%), Positives = 125/249 (50%)

Query:     8 MRAALPSVGMVIVLLAQVSNMEVI-KAAMSKGINKYVIIVYSDAXXXXXXXXXXXXXHRS 66
             M  A P + MV VL   ++ M+++ KA ++KG++ YV++VY  A              + 
Sbjct:    10 MEKARPFISMV-VLQVGLAGMDILSKAVLNKGMSNYVLVVYRHAVATIVMAPFAFYFDKK 68

Query:    67 ERPQLTFSILCSFFLLSVFGCSSQIFS----FVGIQYSSPTLSTAMLNLIPAFTFVLAII 122
              RP++T  I   FF +S+ G    +      ++G++Y++ T +TAM N++PA TFVLA I
Sbjct:    69 VRPKMTLMI---FFKISLLGLLEPVIDQNLYYLGMKYTTATFATAMYNVLPAITFVLAYI 125

Query:   123 FRLEKLNWENKSSQAKSLGTFASIGGAFVVTFYKGPPLIGEXXXXXXXXXXXXXXXXXWI 182
             F LE++      S  K +GT A++GGA ++T  KGP L                     I
Sbjct:   126 FGLERVKLRCIRSTGKVVGTLATVGGAMIMTLVKGPVLDLFWTKGVSAHNTAGTDIHSAI 185

Query:   183 LGGFFLAAEAFMNSAWFILQALILRKFAAVLIIMFYLFFFNTILSTAFALIVVS-EPSDW 241
              G   +    F  + + ILQA+ LR + A L +  ++    TI  TA AL++    PS W
Sbjct:   186 KGAVLVTIGCFSYACFMILQAITLRTYPAELSLTAWICLMGTIEGTAVALVMEKGNPSAW 245

Query:   242 KLGLDIGLV 250
              +G D  L+
Sbjct:   246 AIGWDTKLL 254

GO:0005737 "cytoplasm" evidence=ISM

GO:0016020 "membrane" evidence=IEA;ISS

GO:0019761 "glucosinolate biosynthetic process" evidence=RCA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: GSVIVG00028878001 SubName- Full=Chromosome chr1 scaffold_46, whole genome shotgun sequence; (364 aa) (Vitis vinifera)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	332
PLN00411	358	PLN00411, PLN00411, nodulin MtN21 family protein;	3e-39

>gnl|CDD|177805 PLN00411, PLN00411, nodulin MtN21 family protein; Provisional

 Score =  141 bits (357), Expect = 3e-39
 Identities = 99/272 (36%), Positives = 149/272 (54%), Gaps = 16/272 (5%)

Query: 9   RAALPSVGMVIVLLAQVSNMEVIKAAMSKGINKYVIIVYSDALSSLFFLFCSFLFHRSER 68
           R A+    M+    + V    + K A SKG+N Y  + YS  L+SL  L   F  +RS  
Sbjct: 10  REAVFLTAMLATETSVVGISTLFKVATSKGLNIYPFLGYSYLLASLLLLPSLFFTNRSRS 69

Query: 69  -PQLTFSILCSFFLLSVFGCSSQIFSFVGIQYSSPTLSTAMLNLIPAFTFVLAIIFRLEK 127
            P L+ SIL    LL   G    I  ++GI+YS+PTL++A+ N+ PA TF+LAIIFR+EK
Sbjct: 70  LPPLSVSILSKIGLLGFLGSMYVITGYIGIEYSNPTLASAISNITPALTFILAIIFRMEK 129

Query: 128 LNWENKSSQAKSLGTFASIGGAFVVTFYKGPPLIGELSHSGSPRRL---LLSPQLS---- 180
           ++++ +SS AK +GT  S+ GA VV FY GP     +  + SP  L    LSP LS    
Sbjct: 130 VSFKERSSVAKVMGTILSLIGALVVIFYHGP----RVFVASSPPYLNFRQLSPPLSSSNS 185

Query: 181 -WILGGFFLAAEAFMNSAWFILQALILRKFAAVLIIMFYLFFFNTILSTAFALIV-VSEP 238
            W++GG  L  +    S  FILQA I+ ++ A   + F      +I+++   L+V  + P
Sbjct: 186 DWLIGGALLTIQGIFVSVSFILQAHIMSEYPAAFTVSFLYTVCVSIVTSMIGLVVEKNNP 245

Query: 239 SDWKLGLDIGLVAVLYS--VSSYWHWVSSWLV 268
           S W +  DI L+ ++    ++S ++ + SW V
Sbjct: 246 SVWIIHFDITLITIVTMAIITSVYYVIHSWTV 277

Length = 358

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	332
PLN00411	358	nodulin MtN21 family protein; Provisional	100.0
PRK11272	292	putative DMT superfamily transporter inner membran	99.97
PRK11689	295	aromatic amino acid exporter; Provisional	99.97
PRK11453	299	O-acetylserine/cysteine export protein; Provisiona	99.97
TIGR00950	260	2A78 Carboxylate/Amino Acid/Amine Transporter.	99.96
PRK10532	293	threonine and homoserine efflux system; Provisiona	99.96
PRK15430	296	putative chloramphenical resistance permease RarD;	99.96
TIGR00688	256	rarD rarD protein. This uncharacterized protein is	99.94
TIGR00817	302	tpt Tpt phosphate/phosphoenolpyruvate translocator	99.93
PTZ00343	350	triose or hexose phosphate/phosphate translocator;	99.91
TIGR03340	281	phn_DUF6 phosphonate utilization associated putati	99.9
COG0697	292	RhaT Permeases of the drug/metabolite transporter	99.88
PF06027	334	DUF914: Eukaryotic protein of unknown function (DU	99.79
TIGR00776	290	RhaT RhaT L-rhamnose-proton symporter family prote	99.77
COG5006	292	rhtA Threonine/homoserine efflux transporter [Amin	99.73
COG2962	293	RarD Predicted permeases [General function predict	99.71
KOG4510	346	consensus Permease of the drug/metabolite transpor	99.56
PF00892	126	EamA: EamA-like transporter family; InterPro: IPR0	99.47
PF08449	303	UAA: UAA transporter family; InterPro: IPR013657 T	99.45
KOG2765	416	consensus Predicted membrane protein [Function unk	99.39
COG2510	140	Predicted membrane protein [Function unknown]	99.38
TIGR00950	260	2A78 Carboxylate/Amino Acid/Amine Transporter.	99.2
PF13536	113	EmrE: Multidrug resistance efflux transporter	99.09
PF04142	244	Nuc_sug_transp: Nucleotide-sugar transporter; Inte	98.98
KOG1441	316	consensus Glucose-6-phosphate/phosphate and phosph	98.97
PRK10532	293	threonine and homoserine efflux system; Provisiona	98.86
PF00892	126	EamA: EamA-like transporter family; InterPro: IPR0	98.83
PRK11272	292	putative DMT superfamily transporter inner membran	98.8
COG2510	140	Predicted membrane protein [Function unknown]	98.73
PRK11689	295	aromatic amino acid exporter; Provisional	98.7
PLN00411	358	nodulin MtN21 family protein; Provisional	98.65
KOG2234	345	consensus Predicted UDP-galactose transporter [Car	98.64
TIGR03340	281	phn_DUF6 phosphonate utilization associated putati	98.57
PRK11453	299	O-acetylserine/cysteine export protein; Provisiona	98.56
TIGR00817	302	tpt Tpt phosphate/phosphoenolpyruvate translocator	98.48
PF06800	269	Sugar_transport: Sugar transport protein; InterPro	98.41
KOG1444	314	consensus Nucleotide-sugar transporter VRG4/SQV-7	98.4
PF03151	153	TPT: Triose-phosphate Transporter family; InterPro	98.38
PTZ00343	350	triose or hexose phosphate/phosphate translocator;	98.3
KOG2766	336	consensus Predicted membrane protein [Function unk	98.22
COG0697	292	RhaT Permeases of the drug/metabolite transporter	98.21
TIGR00776	290	RhaT RhaT L-rhamnose-proton symporter family prote	98.21
KOG1443	349	consensus Predicted integral membrane protein [Fun	98.19
PRK15430	296	putative chloramphenical resistance permease RarD;	98.18
PRK15051	111	4-amino-4-deoxy-L-arabinose-phosphoundecaprenol fl	98.14
PF03151	153	TPT: Triose-phosphate Transporter family; InterPro	97.99
KOG4314	290	consensus Predicted carbohydrate/phosphate translo	97.96
TIGR00688	256	rarD rarD protein. This uncharacterized protein is	97.92
KOG3912	372	consensus Predicted integral membrane protein [Gen	97.89
KOG1581	327	consensus UDP-galactose transporter related protei	97.8
PRK13499	345	rhamnose-proton symporter; Provisional	97.77
PRK02971	129	4-amino-4-deoxy-L-arabinose-phosphoundecaprenol fl	97.61
PF05653	300	Mg_trans_NIPA: Magnesium transporter NIPA; InterPr	97.54
COG5006	292	rhtA Threonine/homoserine efflux transporter [Amin	97.41
KOG1580	337	consensus UDP-galactose transporter related protei	97.39
PF06027	334	DUF914: Eukaryotic protein of unknown function (DU	97.31
KOG1442	347	consensus GDP-fucose transporter [Carbohydrate tra	97.19
PF06800	269	Sugar_transport: Sugar transport protein; InterPro	96.94
PRK02971	129	4-amino-4-deoxy-L-arabinose-phosphoundecaprenol fl	96.89
PF10639	113	UPF0546: Uncharacterised protein family UPF0546; I	96.69
PF08449	303	UAA: UAA transporter family; InterPro: IPR013657 T	96.64
KOG2922	335	consensus Uncharacterized conserved protein [Funct	96.58
KOG4510	346	consensus Permease of the drug/metabolite transpor	96.56
TIGR00803	222	nst UDP-galactose transporter. NSTs generally appe	96.53
PF13536	113	EmrE: Multidrug resistance efflux transporter	96.45
PRK10650	109	multidrug efflux system protein MdtI; Provisional	96.28
COG4975	288	GlcU Putative glucose uptake permease [Carbohydrat	96.13
COG5070	309	VRG4 Nucleotide-sugar transporter [Carbohydrate tr	96.03
PRK09541	110	emrE multidrug efflux protein; Reviewed	96.01
PRK15051	111	4-amino-4-deoxy-L-arabinose-phosphoundecaprenol fl	95.9
COG2962	293	RarD Predicted permeases [General function predict	95.75
PRK10452	120	multidrug efflux system protein MdtJ; Provisional	95.66
COG2076	106	EmrE Membrane transporters of cations and cationic	95.63
COG2076	106	EmrE Membrane transporters of cations and cationic	95.63
KOG1582	367	consensus UDP-galactose transporter related protei	95.51
PRK10452	120	multidrug efflux system protein MdtJ; Provisional	95.51
PRK11431	105	multidrug efflux system protein; Provisional	95.44
PF00893	93	Multi_Drug_Res: Small Multidrug Resistance protein	95.42
PRK11431	105	multidrug efflux system protein; Provisional	95.41
PRK09541	110	emrE multidrug efflux protein; Reviewed	95.37
PRK13499	345	rhamnose-proton symporter; Provisional	95.34
PRK10650	109	multidrug efflux system protein MdtI; Provisional	95.31
KOG1441	316	consensus Glucose-6-phosphate/phosphate and phosph	95.09
KOG1583	330	consensus UDP-N-acetylglucosamine transporter [Car	94.4
PF04657	138	DUF606: Protein of unknown function, DUF606; Inter	94.38
KOG2765	416	consensus Predicted membrane protein [Function unk	93.34
TIGR00803	222	nst UDP-galactose transporter. NSTs generally appe	92.23
PF00893	93	Multi_Drug_Res: Small Multidrug Resistance protein	90.89
PF04657	138	DUF606: Protein of unknown function, DUF606; Inter	89.6
KOG1580	337	consensus UDP-galactose transporter related protei	89.51
COG3238	150	Uncharacterized protein conserved in bacteria [Fun	88.58
PF05653	300	Mg_trans_NIPA: Magnesium transporter NIPA; InterPr	85.59
COG3238	150	Uncharacterized protein conserved in bacteria [Fun	85.43
KOG1444	314	consensus Nucleotide-sugar transporter VRG4/SQV-7	83.78
COG4975	288	GlcU Putative glucose uptake permease [Carbohydrat	81.44

>PLN00411 nodulin MtN21 family protein; Provisional

Probab=100.00  E-value=2.2e-36  Score=290.03  Aligned_cols=306  Identities=31%  Similarity=0.493  Sum_probs=241.2

Q ss_pred             chhhHHHHHHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHhhcCC-CCCCCHHHHHHHHHHHHHHH
Q 019995            9 RAALPSVGMVIVLLAQVSNMEVIKAAMSKGINKYVIIVYSDALSSLFFLFCSFLFHRSE-RPQLTFSILCSFFLLSVFGC   87 (332)
Q Consensus         9 ~~~~~~l~li~~~~iwg~~~v~~K~~~~~~~~p~~~~~~R~~~a~l~ll~~~~~~~~~~-~~~~~~~~~~~~~~~gl~g~   87 (332)
                      ++.+++..++.+++.+++..++.|.+++.+++|..++++|+.+|+++++++.+.++|++ +++.+++++..+.+.|++++
T Consensus        10 ~~~~~~~~~~~~q~~~~~~~~~~k~a~~~G~~~~~~~~~R~~iA~l~Ll~~~~~~~~~~~~~~~~~~~~~~l~l~g~~g~   89 (358)
T PLN00411         10 REAVFLTAMLATETSVVGISTLFKVATSKGLNIYPFLGYSYLLASLLLLPSLFFTNRSRSLPPLSVSILSKIGLLGFLGS   89 (358)
T ss_pred             hccchHHHHHHHHHHHHHHHHHHHHHHHCCCCccHHHHHHHHHHHHHHHHHHHHHHHhcccCcchHHHHHHHHHHHHHHH
Confidence            36779999999999999999999999999999999999999999999999877654432 34456788888889999986


Q ss_pred             HHHHHHHHhhcccChhhHHHhhhhhHHHHHHHHHHHHhhccccccccccchhhhhhheeccceeeeecCCCCCcCCC--C
Q 019995           88 SSQIFSFVGIQYSSPTLSTAMLNLIPAFTFVLAIIFRLEKLNWENKSSQAKSLGTFASIGGAFVVTFYKGPPLIGEL--S  165 (332)
Q Consensus        88 ~~~~~~~~gl~~t~a~~asii~~~~Pv~~~ila~l~~~E~l~~~~~~~~~k~iGi~l~~~Gv~ll~~~~g~~~~~~~--~  165 (332)
                      .++.+++.|++|+++++++++.+++|+++.+++++++.|+++.++|.++.|++|++++++|+.++..++++.....+  .
T Consensus        90 ~~~~~~~~gl~~tsa~~asll~~~~P~~~~lla~~~~~e~~~~~er~~~~~~~G~~l~~~Gv~ll~~~~g~~~~~~~~~~  169 (358)
T PLN00411         90 MYVITGYIGIEYSNPTLASAISNITPALTFILAIIFRMEKVSFKERSSVAKVMGTILSLIGALVVIFYHGPRVFVASSPP  169 (358)
T ss_pred             HHHHHHHHHHhhccHHHHHHHHHhhHHHHHHHHHHHHhchhhhcccccHHHHHHHHHHHHHHHHHHHccCcccccccccc
Confidence            67789999999999999999999999999999999987777777777888999999999999887654432110000  0


Q ss_pred             CCCC-CCc-ccCCCCccchhHHHHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHHHHcCC-CCCcc
Q 019995          166 HSGS-PRR-LLLSPQLSWILGGFFLAAEAFMNSAWFILQALILRKFAAVLIIMFYLFFFNTILSTAFALIVVSE-PSDWK  242 (332)
Q Consensus       166 ~~~~-~~~-~~~~~~~~~~~G~~l~L~aa~~~A~~~vl~~~~~~~~~~~~~~~~~~~~~g~i~l~~~~~~~~~~-~~~~~  242 (332)
                      +.|+ ..+ .+...+.+...|+++.++|+++||+|++++||..++++++...++|++.++++.+.+.+...+++ ...|.
T Consensus       170 ~~~~~~~~~~~~~~~~~~~lG~~l~l~aa~~wa~~~il~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~l~~~~~~~~~~~  249 (358)
T PLN00411        170 YLNFRQLSPPLSSSNSDWLIGGALLTIQGIFVSVSFILQAHIMSEYPAAFTVSFLYTVCVSIVTSMIGLVVEKNNPSVWI  249 (358)
T ss_pred             cccccccccccCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHhHHHHHHHHHHHHHHHHHHHHHccCCcccce
Confidence            0000 000 00011123456999999999999999999999988887666788899998888887777665542 23332


Q ss_pred             ccchhhHHHHHHHh--hHHHHHHHHHHhccc-h--hhhhhchHHHHHHHHHHHHhCCccccchhh---hhhheeeeeeec
Q 019995          243 LGLDIGLVAVLYSV--SSYWHWVSSWLVHMV-P--VENWTSLCINVQALGHCLLYCHGCRHCRRR---FLSWKVLLINFF  314 (332)
Q Consensus       243 ~~~~~~~~~l~~~g--t~i~~~l~~~~l~~~-~--~s~~~~l~Pv~a~il~~~~LgE~~~~~~~~---~~~~~~~~~~~~  314 (332)
                      ..++.....++|.|  +.++|.+|+|++++. |  ++.+.+++|++++++|++++||++++.+-.   .+..||.+.+..
T Consensus       250 ~~~~~~~~~i~y~~i~t~lay~lw~~~v~~~ga~~as~~~~L~PV~a~llg~l~LgE~lt~~~~iG~~LIl~Gv~l~~~~  329 (358)
T PLN00411        250 IHFDITLITIVTMAIITSVYYVIHSWTVRHKGPLYLAIFKPLSILIAVVMGAIFLNDSLYLGCLIGGILITLGFYAVMWG  329 (358)
T ss_pred             eccchHHHHHHHHHHHHHHHHHHHHHHHhccCchHHHHHHhHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHHHhh
Confidence            22222344566766  778999999999999 7  999999999999999999999999987665   688888877643

>PRK11272 putative DMT superfamily transporter inner membrane protein; Provisional

Probab=99.97  E-value=3.8e-30  Score=241.04  Aligned_cols=269  Identities=11%  Similarity=0.033  Sum_probs=213.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHHH-HHHHH
Q 019995           13 PSVGMVIVLLAQVSNMEVIKAAMSKGINKYVIIVYSDALSSLFFLFCSFLFHRSERPQLTFSILCSFFLLSVFG-CSSQI   91 (332)
Q Consensus        13 ~~l~li~~~~iwg~~~v~~K~~~~~~~~p~~~~~~R~~~a~l~ll~~~~~~~~~~~~~~~~~~~~~~~~~gl~g-~~~~~   91 (332)
                      -.+.+++..++||++++++|.+.+ ++||..++++|+.+++++++++...+ | ++ ..+++++......|.++ ..++.
T Consensus         9 ~~~~~~~~~~iWg~~~~~~K~~~~-~~~p~~~~~~R~~~a~l~ll~~~~~~-~-~~-~~~~~~~~~~~~~g~~~~~~~~~   84 (292)
T PRK11272          9 LFGALFALYIIWGSTYLVIRIGVE-SWPPLMMAGVRFLIAGILLLAFLLLR-G-HP-LPTLRQWLNAALIGLLLLAVGNG   84 (292)
T ss_pred             HHHHHHHHHHHHhhHHHHHHHHhc-cCCHHHHHHHHHHHHHHHHHHHHHHh-C-CC-CCcHHHHHHHHHHHHHHHHHHHH
Confidence            345777899999999999999887 59999999999999999998876542 2 22 23467788888899888 77888


Q ss_pred             HHHHhh-cccChhhHHHhhhhhHHHHHHHHHHHHhhccccccccccchhhhhhheeccceeeeecCCCCCcCCCCCCCCC
Q 019995           92 FSFVGI-QYSSPTLSTAMLNLIPAFTFVLAIIFRLEKLNWENKSSQAKSLGTFASIGGAFVVTFYKGPPLIGELSHSGSP  170 (332)
Q Consensus        92 ~~~~gl-~~t~a~~asii~~~~Pv~~~ila~l~~~E~l~~~~~~~~~k~iGi~l~~~Gv~ll~~~~g~~~~~~~~~~~~~  170 (332)
                      +++.+. ++++++.++++.+++|+++.+++++ +|||++++      +++|++++++|+.++... + +           
T Consensus        85 ~~~~~~~~~~~a~~a~~l~~~~Pl~~~lla~~-~~e~~~~~------~~~~~~la~~Gv~ll~~~-~-~-----------  144 (292)
T PRK11272         85 MVTVAEHQNVPSGIAAVVVATVPLFTLCFSRL-FGIRTRKL------EWLGIAIGLAGIVLLNSG-G-N-----------  144 (292)
T ss_pred             HHHHHHHccCcHHHHHHHHHHHHHHHHHHHHH-hcccCchh------HHHHHHHHHHhHHHHhcC-c-c-----------
Confidence            999999 9999999999999999999999986 69998876      499999999999876421 0 0           


Q ss_pred             CcccCCCCccchhHHHHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHHHHcCCCCCccccchhhHH
Q 019995          171 RRLLLSPQLSWILGGFFLAAEAFMNSAWFILQALILRKFAAVLIIMFYLFFFNTILSTAFALIVVSEPSDWKLGLDIGLV  250 (332)
Q Consensus       171 ~~~~~~~~~~~~~G~~l~L~aa~~~A~~~vl~~~~~~~~~~~~~~~~~~~~~g~i~l~~~~~~~~~~~~~~~~~~~~~~~  250 (332)
                            .+ ....|+++.++|+++||.|.+..||..++  ++...+.+++..+++.+.+.....+.+....  .+...|.
T Consensus       145 ------~~-~~~~G~l~~l~a~~~~a~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~  213 (292)
T PRK11272        145 ------LS-GNPWGAILILIASASWAFGSVWSSRLPLP--VGMMAGAAEMLAAGVVLLIASLLSGERLTAL--PTLSGFL  213 (292)
T ss_pred             ------cc-cchHHHHHHHHHHHHHHHHHHHHHhcCCC--cchHHHHHHHHHHHHHHHHHHHHcCCccccc--CCHHHHH
Confidence                  11 12469999999999999999998886433  3455678999899888877765433322111  1123456


Q ss_pred             HHHHHh---hHHHHHHHHHHhccc-h--hhhhhchHHHHHHHHHHHHhCCccccchhh---hhhheeeeeeeccC
Q 019995          251 AVLYSV---SSYWHWVSSWLVHMV-P--VENWTSLCINVQALGHCLLYCHGCRHCRRR---FLSWKVLLINFFSN  316 (332)
Q Consensus       251 ~l~~~g---t~i~~~l~~~~l~~~-~--~s~~~~l~Pv~a~il~~~~LgE~~~~~~~~---~~~~~~~~~~~~~~  316 (332)
                      .++|.|   |+++|.+|++++++. +  ++.+.+++|++++++|++++||+++..+-.   .+..++++.+..++
T Consensus       214 ~i~~l~i~~s~~~~~l~~~~~~~~~~~~~s~~~~l~Pi~a~i~~~~~l~E~~t~~~iiG~~lIi~gv~~~~~~~~  288 (292)
T PRK11272        214 ALGYLAVFGSIIAISAYMYLLRNVRPALATSYAYVNPVVAVLLGTGLGGETLSPIEWLALGVIVFAVVLVTLGKY  288 (292)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHHHHHHHHHh
Confidence            666666   899999999999999 6  999999999999999999999999986644   57778877665444

>PRK11689 aromatic amino acid exporter; Provisional

Probab=99.97  E-value=1.3e-29  Score=237.88  Aligned_cols=273  Identities=14%  Similarity=0.071  Sum_probs=197.2

Q ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHHH-HH
Q 019995           10 AALPSVGMVIVLLAQVSNMEVIKAAMSKGINKYVIIVYSDALSSLFFLFCSFLFHRSERPQLTFSILCSFFLLSVFG-CS   88 (332)
Q Consensus        10 ~~~~~l~li~~~~iwg~~~v~~K~~~~~~~~p~~~~~~R~~~a~l~ll~~~~~~~~~~~~~~~~~~~~~~~~~gl~g-~~   88 (332)
                      |.++++.+++++++||++++.+|.+.++ +||..++++|+.+++++++++.  .+++ .++.+    ++....+.++ ..
T Consensus         2 ~~~~~l~~l~a~~~Wg~~~~~~k~~~~~-~~P~~~~~~R~~~a~l~l~~~~--~~~~-~~~~~----~~~~~~~~l~~~~   73 (295)
T PRK11689          2 SQKATLIGLIAILLWSTMVGLIRGVSES-LGPVGGAAMIYSVSGLLLLLTV--GFPR-LRQFP----KRYLLAGGLLFVS   73 (295)
T ss_pred             CcchhHHHHHHHHHHHHHHHHHHHHHcc-CChHHHHHHHHHHHHHHHHHHc--cccc-ccccc----HHHHHHHhHHHHH
Confidence            4567888999999999999999999875 9999999999999999988652  1111 11111    2233445555 77


Q ss_pred             HHHHHHHhhcc----cChhhHHHhhhhhHHHHHHHHHHHHhhccccccccccchhhhhhheeccceeeeecCCCCCcCCC
Q 019995           89 SQIFSFVGIQY----SSPTLSTAMLNLIPAFTFVLAIIFRLEKLNWENKSSQAKSLGTFASIGGAFVVTFYKGPPLIGEL  164 (332)
Q Consensus        89 ~~~~~~~gl~~----t~a~~asii~~~~Pv~~~ila~l~~~E~l~~~~~~~~~k~iGi~l~~~Gv~ll~~~~g~~~~~~~  164 (332)
                      ++.+++.|++|    +++++++++.+++|+++.+++++++|||++++      |++|++++++|++++... +...+.  
T Consensus        74 ~~~~~~~a~~~~~~~~~a~~a~~l~~~~Pi~~~ll~~~~~~e~~~~~------~~~g~~l~~~Gv~li~~~-~~~~~~--  144 (295)
T PRK11689         74 YEICLALSLGYANTRRQAIEVGMVNYLWPSLTILFAVLFNGQKANWL------LIPGLLLALAGVAWVLGG-DNGLSL--  144 (295)
T ss_pred             HHHHHHHHHHHhhccccchHHHHHHHHhHHHHHHHHHHHhcCCccHH------HHHHHHHHHHhHhheecC-Cccchh--
Confidence            77788888764    57888999999999999999999999998876      499999999999887622 110000  


Q ss_pred             CCCCCCCcccCCCCccchhHHHHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHHHHcCCCCCcccc
Q 019995          165 SHSGSPRRLLLSPQLSWILGGFFLAAEAFMNSAWFILQALILRKFAAVLIIMFYLFFFNTILSTAFALIVVSEPSDWKLG  244 (332)
Q Consensus       165 ~~~~~~~~~~~~~~~~~~~G~~l~L~aa~~~A~~~vl~~~~~~~~~~~~~~~~~~~~~g~i~l~~~~~~~~~~~~~~~~~  244 (332)
                             ++......+...|+++.++|++|||.|+++.||..++. ++...  .+ ..+++.+.+.....+.+...++  
T Consensus       145 -------~~~~~~~~~~~~G~~~~l~aa~~~A~~~v~~k~~~~~~-~~~~~--~~-~~~~~~l~~~~~~~~~~~~~~~--  211 (295)
T PRK11689        145 -------AELINNIASNPLSYGLAFIGAFIWAAYCNVTRKYARGK-NGITL--FF-ILTALALWIKYFLSPQPAMVFS--  211 (295)
T ss_pred             -------hhhhhccccChHHHHHHHHHHHHHHHHHHHHhhccCCC-CchhH--HH-HHHHHHHHHHHHHhcCccccCC--
Confidence                   00000001224699999999999999999999987665 45543  22 3334444443333222111122  


Q ss_pred             chhhHHHHHHHh--hHHHHHHHHHHhccc-h--hhhhhchHHHHHHHHHHHHhCCccccchhh---hhhheeeeeee
Q 019995          245 LDIGLVAVLYSV--SSYWHWVSSWLVHMV-P--VENWTSLCINVQALGHCLLYCHGCRHCRRR---FLSWKVLLINF  313 (332)
Q Consensus       245 ~~~~~~~l~~~g--t~i~~~l~~~~l~~~-~--~s~~~~l~Pv~a~il~~~~LgE~~~~~~~~---~~~~~~~~~~~  313 (332)
                      + ..|..+++.|  ++++|.+|++++++. |  ++.+.+++|++++++|++++||+++..+-.   .+..++++...
T Consensus       212 ~-~~~~~l~~~~~~t~~~~~l~~~al~~~~a~~~s~~~~l~Pv~a~i~~~~~lgE~~~~~~~iG~~lI~~gv~~~~~  287 (295)
T PRK11689        212 L-PAIIKLLLAAAAMGFGYAAWNVGILHGNMTLLATASYFTPVLSAALAALLLSTPLSFSFWQGVAMVTAGSLLCWL  287 (295)
T ss_pred             H-HHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHhHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHhHHHHhh
Confidence            2 3466666766  999999999999999 6  999999999999999999999999986655   56677765543

>PRK11453 O-acetylserine/cysteine export protein; Provisional

Probab=99.97  E-value=6.1e-29  Score=233.69  Aligned_cols=266  Identities=16%  Similarity=0.093  Sum_probs=199.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHHH-HHHHH
Q 019995           13 PSVGMVIVLLAQVSNMEVIKAAMSKGINKYVIIVYSDALSSLFFLFCSFLFHRSERPQLTFSILCSFFLLSVFG-CSSQI   91 (332)
Q Consensus        13 ~~l~li~~~~iwg~~~v~~K~~~~~~~~p~~~~~~R~~~a~l~ll~~~~~~~~~~~~~~~~~~~~~~~~~gl~g-~~~~~   91 (332)
                      ..+..++++++||++++++|.++++ +||.+++++|+.++++.++++.  +++    +.++   ......|+.. ...+.
T Consensus         5 ~~l~~l~~~~~Wg~~~~~~k~~~~~-~~p~~~~~~R~~~a~~~l~~~~--~~~----~~~~---~~~~~~g~~~~~~~~~   74 (299)
T PRK11453          5 DGVLALLVVVVWGLNFVVIKVGLHN-MPPLMLAGLRFMLVAFPAIFFV--ARP----KVPL---NLLLGYGLTISFGQFA   74 (299)
T ss_pred             HHHHHHHHHHHHhhhHHHHHHHHhc-CCHHHHHHHHHHHHHHHHHHHh--cCC----CCch---HHHHHHHHHHHHHHHH
Confidence            3466888999999999999999875 9999999999999887766543  111    1122   2344556665 56667


Q ss_pred             HHHHhhcc-cChhhHHHhhhhhHHHHHHHHHHHHhhccccccccccchhhhhhheeccceeeeecCCCCCcCCCCCCCCC
Q 019995           92 FSFVGIQY-SSPTLSTAMLNLIPAFTFVLAIIFRLEKLNWENKSSQAKSLGTFASIGGAFVVTFYKGPPLIGELSHSGSP  170 (332)
Q Consensus        92 ~~~~gl~~-t~a~~asii~~~~Pv~~~ila~l~~~E~l~~~~~~~~~k~iGi~l~~~Gv~ll~~~~g~~~~~~~~~~~~~  170 (332)
                      +++.+++| .++++++++.+++|+++.+++++++|||+++++      ++|++++++|+.++... +.            
T Consensus        75 ~~~~~~~~~~~a~~a~~l~~~~pi~~~ll~~~~l~e~~~~~~------~~~~~l~~~Gv~ll~~~-~~------------  135 (299)
T PRK11453         75 FLFCAINFGMPAGLASLVLQAQAFFTIVLGAFTFGERLQGKQ------LAGIALAIFGVLVLIED-SL------------  135 (299)
T ss_pred             HHHHHHHhcCCHHHHHHHHHhHHHHHHHHHHHHhcCcCcHHH------HHHHHHHHHhHHHhccc-cC------------
Confidence            88889998 588999999999999999999999999998764      99999999999887521 10            


Q ss_pred             CcccCCCCccchhHHHHHHHHHHHHHHHHHHHHHHHHhcch--hHHHHHHHHHHHHHHHHHHHHHHcCCCC---Cccccc
Q 019995          171 RRLLLSPQLSWILGGFFLAAEAFMNSAWFILQALILRKFAA--VLIIMFYLFFFNTILSTAFALIVVSEPS---DWKLGL  245 (332)
Q Consensus       171 ~~~~~~~~~~~~~G~~l~L~aa~~~A~~~vl~~~~~~~~~~--~~~~~~~~~~~g~i~l~~~~~~~~~~~~---~~~~~~  245 (332)
                           ........|+++.++|+++||.|++++||..++.++  ......+++..+.+.....+...+++..   .+...+
T Consensus       136 -----~~~~~~~~G~~l~l~aal~~a~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  210 (299)
T PRK11453        136 -----NGQHVAMLGFMLTLAAAFSWACGNIFNKKIMSHSTRPAVMSLVVWSALIPIIPFFVASLILDGSATMIHSLVTID  210 (299)
T ss_pred             -----CCcchhHHHHHHHHHHHHHHHHHHHHHHHHhcccCccchhHHHHHHHHHHHHHHHHHHHHhcCchhhhhhhccCC
Confidence                 011112469999999999999999999997655432  3445667777776665555544443211   111112


Q ss_pred             hhhHHHHHHHh---hHHHHHHHHHHhccc-h--hhhhhchHHHHHHHHHHHHhCCccccchhh---hhhheeeeee
Q 019995          246 DIGLVAVLYSV---SSYWHWVSSWLVHMV-P--VENWTSLCINVQALGHCLLYCHGCRHCRRR---FLSWKVLLIN  312 (332)
Q Consensus       246 ~~~~~~l~~~g---t~i~~~l~~~~l~~~-~--~s~~~~l~Pv~a~il~~~~LgE~~~~~~~~---~~~~~~~~~~  312 (332)
                      ...|..++|.|   |+++|.+|++++++. +  ++.+.+++|++++++|++++||+++..+-.   .+..++.+.+
T Consensus       211 ~~~~~~l~~l~i~~t~~~~~l~~~~l~~~~a~~~s~~~~l~Pv~a~~~~~l~lgE~~~~~~~iG~~lI~~gv~l~~  286 (299)
T PRK11453        211 MTTILSLMYLAFVATIVGYGIWGTLLGRYETWRVAPLSLLVPVVGLASAALLLDERLTGLQFLGAVLIMAGLYINV  286 (299)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHHHHh
Confidence            23577788887   999999999999999 6  999999999999999999999999986655   4666666443

>TIGR00950 2A78 Carboxylate/Amino Acid/Amine Transporter

Probab=99.96  E-value=2.4e-27  Score=217.50  Aligned_cols=240  Identities=15%  Similarity=0.116  Sum_probs=195.1

Q ss_pred             HHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHHH-HHHHHHHHHhhcccCh
Q 019995           24 QVSNMEVIKAAMSKGINKYVIIVYSDALSSLFFLFCSFLFHRSERPQLTFSILCSFFLLSVFG-CSSQIFSFVGIQYSSP  102 (332)
Q Consensus        24 wg~~~v~~K~~~~~~~~p~~~~~~R~~~a~l~ll~~~~~~~~~~~~~~~~~~~~~~~~~gl~g-~~~~~~~~~gl~~t~a  102 (332)
                      ||.+++.+|.+++++.|+...++.|++.+.+++.++...  +     .+++++.+....|.++ .+++.+++.|++|+++
T Consensus         1 Wg~~~~~~k~~~~~~~~~~~~~~~r~~~~~l~l~~~~~~--~-----~~~~~~~~~~~~~~~~~~l~~~~~~~a~~~~~~   73 (260)
T TIGR00950         1 WGTTGVVIGQYLEGQVPLYFAVFRRLIFALLLLLPLLRR--R-----PPLKRLLRLLLLGALQIGVFYVLYFVAVKRLPV   73 (260)
T ss_pred             CcchHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHh--c-----cCHhHHHHHHHHHHHHHHHHHHHHHHHHHhcCh
Confidence            899999999999877899999999999998888776432  2     2345667788888888 8999999999999999


Q ss_pred             hhHHHhhhhhHHHHHHHHHHHHhhccccccccccchhhhhhheeccceeeeecCCCCCcCCCCCCCCCCcccCCCCccch
Q 019995          103 TLSTAMLNLIPAFTFVLAIIFRLEKLNWENKSSQAKSLGTFASIGGAFVVTFYKGPPLIGELSHSGSPRRLLLSPQLSWI  182 (332)
Q Consensus       103 ~~asii~~~~Pv~~~ila~l~~~E~l~~~~~~~~~k~iGi~l~~~Gv~ll~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~  182 (332)
                      ++++++.+++|+++.+++.+++|||++++      +++|++++++|+.++. .++ +                  .....
T Consensus        74 ~~~~ii~~~~P~~~~~~~~l~~~e~~~~~------~~~gi~i~~~Gv~li~-~~~-~------------------~~~~~  127 (260)
T TIGR00950        74 GEAALLLYLAPLYVTLLSDLMGKERPRKL------VLLAAVLGLAGAVLLL-SDG-N------------------LSINP  127 (260)
T ss_pred             hhhHHHHhhhHHHHHHHHHHHccCCCcHH------HHHHHHHHHHhHHhhc-cCC-c------------------ccccH
Confidence            99999999999999999999999999876      4999999999998865 211 0                  11235


Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHhcc-hhHHHHHHHHHHHHHHHHHHHHHHcCCCCCccccchhhHHHHHHHh---hH
Q 019995          183 LGGFFLAAEAFMNSAWFILQALILRKFA-AVLIIMFYLFFFNTILSTAFALIVVSEPSDWKLGLDIGLVAVLYSV---SS  258 (332)
Q Consensus       183 ~G~~l~L~aa~~~A~~~vl~~~~~~~~~-~~~~~~~~~~~~g~i~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~g---t~  258 (332)
                      .|+.+.++++++|+.+.+..||..++.+ ++...+.+++.++.+.+.+.....+++. .+   +...+..+++.+   +.
T Consensus       128 ~G~~~~l~a~~~~a~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~-~~---~~~~~~~~~~~~~~~~~  203 (260)
T TIGR00950       128 AGLLLGLGSGISFALGTVLYKRLVKKEGPELLQFTGWVLLLGALLLLPFAWFLGPNP-QA---LSLQWGALLYLGLIGTA  203 (260)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhHHhhcCCchHHHHHHHHHHHHHHHHHHHHHhcCCCC-Cc---chHHHHHHHHHHHHHHH
Confidence            7999999999999999999999877653 2345555788899888888765533222 22   123455555565   88


Q ss_pred             HHHHHHHHHhccc-h--hhhhhchHHHHHHHHHHHHhCCccccch
Q 019995          259 YWHWVSSWLVHMV-P--VENWTSLCINVQALGHCLLYCHGCRHCR  300 (332)
Q Consensus       259 i~~~l~~~~l~~~-~--~s~~~~l~Pv~a~il~~~~LgE~~~~~~  300 (332)
                      ++|.+|++++++. +  ++.+.+++|+++++++++++||+++..+
T Consensus       204 ~~~~~~~~a~~~~~~~~~s~~~~~~pv~~~ll~~~~~~E~~~~~~  248 (260)
T TIGR00950       204 LAYFLWNKGLTLVDPSAASILALAEPLVALLLGLLILGETLSLPQ  248 (260)
T ss_pred             HHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHHHhCCCCCHHH
Confidence            9999999999999 5  9999999999999999999999999654

>PRK10532 threonine and homoserine efflux system; Provisional

Probab=99.96  E-value=4.4e-27  Score=220.47  Aligned_cols=271  Identities=8%  Similarity=-0.003  Sum_probs=208.1

Q ss_pred             CCCcccccchhhHHHHHHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHH
Q 019995            1 MGVDMGSMRAALPSVGMVIVLLAQVSNMEVIKAAMSKGINKYVIIVYSDALSSLFFLFCSFLFHRSERPQLTFSILCSFF   80 (332)
Q Consensus         1 ~~~~~~~~~~~~~~l~li~~~~iwg~~~v~~K~~~~~~~~p~~~~~~R~~~a~l~ll~~~~~~~~~~~~~~~~~~~~~~~   80 (332)
                      |-++..+..+.+++..++++++.|+.+..++|.+.++ .||..++++|+.+++++++++...  ++  .+.++++++...
T Consensus         1 ~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~K~~~~~-~~~~~~~~~R~~~a~l~l~~~~~~--~~--~~~~~~~~~~~~   75 (293)
T PRK10532          1 MPGSLRKLPVWLPILLLLIAMASIQSGASLAKSLFPL-VGAPGVTALRLALGTLILIAIFKP--WR--LRFAKEQRLPLL   75 (293)
T ss_pred             CCCcccccccchHHHHHHHHHHHHHhhHHHHHHHHHH-cCHHHHHHHHHHHHHHHHHHHHhH--Hh--ccCCHHHHHHHH
Confidence            3445555667889999999999999999999999986 999999999999999998876422  21  134567787888


Q ss_pred             HHHHHHHHHHHHHHHhhcccChhhHHHhhhhhHHHHHHHHHHHHhhccccccccccchhhhhhheeccceeeeecCCCCC
Q 019995           81 LLSVFGCSSQIFSFVGIQYSSPTLSTAMLNLIPAFTFVLAIIFRLEKLNWENKSSQAKSLGTFASIGGAFVVTFYKGPPL  160 (332)
Q Consensus        81 ~~gl~g~~~~~~~~~gl~~t~a~~asii~~~~Pv~~~ila~l~~~E~l~~~~~~~~~k~iGi~l~~~Gv~ll~~~~g~~~  160 (332)
                      ..|++....+.+++++++|++++.++++.+++|+++.+++.    |+..        +..++.++++|+.++. ..+.+ 
T Consensus        76 ~~g~~~~~~~~~~~~al~~~~~~~a~~l~~t~Pi~~~ll~~----~~~~--------~~~~~~i~~~Gv~li~-~~~~~-  141 (293)
T PRK10532         76 FYGVSLGGMNYLFYLSIQTVPLGIAVALEFTGPLAVALFSS----RRPV--------DFVWVVLAVLGLWFLL-PLGQD-  141 (293)
T ss_pred             HHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHhc----CChH--------HHHHHHHHHHHHheee-ecCCC-
Confidence            88887777788899999999999999999999999987762    3321        3566788899998765 21111 


Q ss_pred             cCCCCCCCCCCcccCCCCccchhHHHHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHHHHcCCCCC
Q 019995          161 IGELSHSGSPRRLLLSPQLSWILGGFFLAAEAFMNSAWFILQALILRKFAAVLIIMFYLFFFNTILSTAFALIVVSEPSD  240 (332)
Q Consensus       161 ~~~~~~~~~~~~~~~~~~~~~~~G~~l~L~aa~~~A~~~vl~~~~~~~~~~~~~~~~~~~~~g~i~l~~~~~~~~~~~~~  240 (332)
                                      .+.....|+++.++|+++||.|.+..||..++.+ +... .++..++++.+.+.....+. ...
T Consensus       142 ----------------~~~~~~~G~ll~l~aa~~~a~~~v~~r~~~~~~~-~~~~-~~~~~~~~~~l~~~~~~~~~-~~~  202 (293)
T PRK10532        142 ----------------VSHVDLTGAALALGAGACWAIYILSGQRAGAEHG-PATV-AIGSLIAALIFVPIGALQAG-EAL  202 (293)
T ss_pred             ----------------cccCChHHHHHHHHHHHHHHHHHHHHHHHhccCC-chHH-HHHHHHHHHHHHHHHHHccC-ccc
Confidence                            1112246999999999999999999999877764 6665 46667777777776654322 111


Q ss_pred             ccccchhhHHHHHHHh---hHHHHHHHHHHhccc-h--hhhhhchHHHHHHHHHHHHhCCccccchhh---hhhheeeee
Q 019995          241 WKLGLDIGLVAVLYSV---SSYWHWVSSWLVHMV-P--VENWTSLCINVQALGHCLLYCHGCRHCRRR---FLSWKVLLI  311 (332)
Q Consensus       241 ~~~~~~~~~~~l~~~g---t~i~~~l~~~~l~~~-~--~s~~~~l~Pv~a~il~~~~LgE~~~~~~~~---~~~~~~~~~  311 (332)
                      ++  + ..+..++|.|   |.++|.+|+++++|. +  ++.+.++||++++++|++++||+++..+-.   .++.++++.
T Consensus       203 ~~--~-~~~~~~l~lgv~~t~~~~~l~~~~~~~~~a~~as~~~~l~Pv~a~l~~~l~lgE~~~~~~~iG~~lIl~~~~~~  279 (293)
T PRK10532        203 WH--W-SILPLGLAVAILSTALPYSLEMIALTRLPTRTFGTLMSMEPALAAVSGMIFLGETLTLIQWLALGAIIAASMGS  279 (293)
T ss_pred             CC--H-HHHHHHHHHHHHHHHHHHHHHHHHHHhcChhHHHHHHHhHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHH
Confidence            21  1 2344445666   999999999999999 6  999999999999999999999999987766   466676665


Q ss_pred             e
Q 019995          312 N  312 (332)
Q Consensus       312 ~  312 (332)
                      .
T Consensus       280 ~  280 (293)
T PRK10532        280 T  280 (293)
T ss_pred             H
Confidence            4

>PRK15430 putative chloramphenical resistance permease RarD; Provisional

Probab=99.96  E-value=1.4e-27  Score=224.18  Aligned_cols=259  Identities=12%  Similarity=0.013  Sum_probs=188.5

Q ss_pred             cccccchhhHHHHHHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHhhcCCC--CCC-CHHHHHHHH
Q 019995            4 DMGSMRAALPSVGMVIVLLAQVSNMEVIKAAMSKGINKYVIIVYSDALSSLFFLFCSFLFHRSER--PQL-TFSILCSFF   80 (332)
Q Consensus         4 ~~~~~~~~~~~l~li~~~~iwg~~~v~~K~~~~~~~~p~~~~~~R~~~a~l~ll~~~~~~~~~~~--~~~-~~~~~~~~~   80 (332)
                      ||+  ++.++++.+++++++||.+++++|.. + ++||.++.++|++++.++++++...++++.+  ++. +++++.. .
T Consensus         2 ~~~--~~~~g~~~~l~a~~~wg~~~~~~k~~-~-~~~~~~~~~~R~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~   76 (296)
T PRK15430          2 DAK--QTRQGVLLALAAYFIWGIAPAYFKLI-Y-YVPADEILTHRVIWSFFFMVVLMSICRQWSYLKTLIQTPQKIFM-L   76 (296)
T ss_pred             Cch--hhhhHHHHHHHHHHHHHHHHHHHHHh-c-CCCHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHcCHHHHHH-H
Confidence            455  46789999999999999999999975 4 5999999999999999988776544321111  011 2343333 3


Q ss_pred             HHHHHH-HHHHHHHHHhhcccChhhHHHhhhhhHHHHHHHHHHHHhhccccccccccchhhhhhheeccceeeeecCCCC
Q 019995           81 LLSVFG-CSSQIFSFVGIQYSSPTLSTAMLNLIPAFTFVLAIIFRLEKLNWENKSSQAKSLGTFASIGGAFVVTFYKGPP  159 (332)
Q Consensus        81 ~~gl~g-~~~~~~~~~gl~~t~a~~asii~~~~Pv~~~ila~l~~~E~l~~~~~~~~~k~iGi~l~~~Gv~ll~~~~g~~  159 (332)
                      ..+.++ ..++.++++|++++++++++++.+++|+++.+++++++|||+++++      ++|++++++|+.++....   
T Consensus        77 ~~~~~~~~~~~~~~~~a~~~~~~~~a~~l~~~~Pi~v~l~~~~~l~E~~~~~~------~~g~~l~~~Gv~li~~~~---  147 (296)
T PRK15430         77 AVSAVLIGGNWLLFIWAVNNHHMLEASLGYFINPLVNIVLGMIFLGERFRRMQ------WLAVILAICGVLVQLWTF---  147 (296)
T ss_pred             HHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHhcCCCcHHH------HHHHHHHHHHHHHHHHHc---
Confidence            356565 8899999999999999999999999999999999999999998764      999999999998764110   


Q ss_pred             CcCCCCCCCCCCcccCCCCccchhHHHHHHHHHHHHHHHHHHHHHHHHhc-chhHHHHHHHHHHHHHHHHHHHHHHcCCC
Q 019995          160 LIGELSHSGSPRRLLLSPQLSWILGGFFLAAEAFMNSAWFILQALILRKF-AAVLIIMFYLFFFNTILSTAFALIVVSEP  238 (332)
Q Consensus       160 ~~~~~~~~~~~~~~~~~~~~~~~~G~~l~L~aa~~~A~~~vl~~~~~~~~-~~~~~~~~~~~~~g~i~l~~~~~~~~~~~  238 (332)
                                        +..    ..+.++++++||.|++..||..++. .+....+.|++..+.....+..   +.+.
T Consensus       148 ------------------~~~----~~~~l~aa~~~a~~~i~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~  202 (296)
T PRK15430        148 ------------------GSL----PIIALGLAFSFAFYGLVRKKIAVEAQTGMLIETMWLLPVAAIYLFAIA---DSST  202 (296)
T ss_pred             ------------------CCc----cHHHHHHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHHHHHHHHHHc---cCCc
Confidence                              111    1467889999999999988864321 1234445566655554432211   1111


Q ss_pred             CCccccchhhHHH-HHHHh--hHHHHHHHHHHhccc-h--hhhhhchHHHHHHHHHHHHhCCccccchhh
Q 019995          239 SDWKLGLDIGLVA-VLYSV--SSYWHWVSSWLVHMV-P--VENWTSLCINVQALGHCLLYCHGCRHCRRR  302 (332)
Q Consensus       239 ~~~~~~~~~~~~~-l~~~g--t~i~~~l~~~~l~~~-~--~s~~~~l~Pv~a~il~~~~LgE~~~~~~~~  302 (332)
                      ..++. +...+.. +.+.|  +.++|.+|++++++. |  ++.+.+++|++++++|++++||+++..+-.
T Consensus       203 ~~~~~-~~~~~~~~~~~~g~~t~i~~~~~~~a~~~~~a~~~s~~~~l~Pv~a~~~g~l~l~E~~~~~~~~  271 (296)
T PRK15430        203 SHMGQ-NPMSLNLLLIAAGIVTTVPLLCFTAAATRLRLSTLGFFQYIGPTLMFLLAVTFYGEKPGADKMV  271 (296)
T ss_pred             ccccC-CcHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHH
Confidence            11111 1111222 22334  889999999999999 6  999999999999999999999999986554

>TIGR00688 rarD rarD protein

Probab=99.94  E-value=4.7e-25  Score=202.58  Aligned_cols=243  Identities=9%  Similarity=-0.029  Sum_probs=173.1

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHhhcCC----C-CCCCHHH-HHHHHHHHHH
Q 019995           12 LPSVGMVIVLLAQVSNMEVIKAAMSKGINKYVIIVYSDALSSLFFLFCSFLFHRSE----R-PQLTFSI-LCSFFLLSVF   85 (332)
Q Consensus        12 ~~~l~li~~~~iwg~~~v~~K~~~~~~~~p~~~~~~R~~~a~l~ll~~~~~~~~~~----~-~~~~~~~-~~~~~~~gl~   85 (332)
                      |++..+++++++||.+++++|. .+ ++||.+++++|+++++++++++...+++++    + ++.++++ +..+...|++
T Consensus         2 ~g~~~~i~a~~~wg~~~~~~k~-~~-~~~~~~i~~~R~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~   79 (256)
T TIGR00688         2 KGIIVSLLASFLFGYMYYYSKL-LK-PLPATDILGHRMIWSFPFMLLSVTLFRQWAALIERLKRIQKRPLILSLLLCGLL   79 (256)
T ss_pred             CcHHHHHHHHHHHHHHHHHHHH-hc-cCCHHHHHHHHHHHHHHHHHHHHHHHcchHHHHHHHhCcccchHHHHHHHHHHH
Confidence            5788999999999999999998 45 499999999999999988877654432211    0 1112222 3445667777


Q ss_pred             HHHHHHHHHHhhcccChhhHHHhhhhhHHHHHHHHHHHHhhccccccccccchhhhhhheeccceeeeecCCCCCcCCCC
Q 019995           86 GCSSQIFSFVGIQYSSPTLSTAMLNLIPAFTFVLAIIFRLEKLNWENKSSQAKSLGTFASIGGAFVVTFYKGPPLIGELS  165 (332)
Q Consensus        86 g~~~~~~~~~gl~~t~a~~asii~~~~Pv~~~ila~l~~~E~l~~~~~~~~~k~iGi~l~~~Gv~ll~~~~g~~~~~~~~  165 (332)
                      ...++.++++|++++++++++++.+++|+++++++++++|||+++++      ++|++++++|+.++...+         
T Consensus        80 ~~~~~~~~~~a~~~~~~~~a~~l~~~~Pi~~~lla~~~l~Ek~~~~~------~l~~~~~~~Gv~li~~~~---------  144 (256)
T TIGR00688        80 IGFNWWLFIWAVNNGSSLEVSLGYLINPLVMVALGRVFLKERISRFQ------FIAVIIATLGVISNIVLK---------  144 (256)
T ss_pred             HHHHHHHHHHHHHcchHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHH------HHHHHHHHHHHHHHHHHc---------
Confidence            78899999999999999999999999999999999999999998764      999999999998764110         


Q ss_pred             CCCCCCcccCCCCccchhHHHHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHHHHcCCCCCccccc
Q 019995          166 HSGSPRRLLLSPQLSWILGGFFLAAEAFMNSAWFILQALILRKFAAVLIIMFYLFFFNTILSTAFALIVVSEPSDWKLGL  245 (332)
Q Consensus       166 ~~~~~~~~~~~~~~~~~~G~~l~L~aa~~~A~~~vl~~~~~~~~~~~~~~~~~~~~~g~i~l~~~~~~~~~~~~~~~~~~  245 (332)
                                  +..    ..+.+++++|||.|.+..||..++ + .......+ ........+... ...........+
T Consensus       145 ------------~~~----~~~~l~aa~~~a~~~i~~~~~~~~-~-~~~~~~~~-~~~~~~~~~~~~-~~~~~~~~~~~~  204 (256)
T TIGR00688       145 ------------GSL----PWEALVLAFSFTAYGLIRKALKNT-D-LAGFCLET-LSLMPVAIYYLL-QTDFATVQQTNP  204 (256)
T ss_pred             ------------CCc----hHHHHHHHHHHHHHHHHHhhcCCC-C-cchHHHHH-HHHHHHHHHHHH-HhccCcccccCc
Confidence                        101    135788999999999998876432 2 22221111 111111111111 111111001111


Q ss_pred             hhhHHHHHHHh--hHHHHHHHHHHhccc-h--hhhhhchHHHHHHHHHHHH
Q 019995          246 DIGLVAVLYSV--SSYWHWVSSWLVHMV-P--VENWTSLCINVQALGHCLL  291 (332)
Q Consensus       246 ~~~~~~l~~~g--t~i~~~l~~~~l~~~-~--~s~~~~l~Pv~a~il~~~~  291 (332)
                      ...|..+++.|  |.++|.+|++++++. +  ++.+.+++|++++++|+++
T Consensus       205 ~~~~~~l~~~g~~t~i~~~l~~~a~~~~~a~~~s~~~yl~Pv~~~~~~~~~  255 (256)
T TIGR00688       205 FPIWLLLVLAGLITGTPLLAFVIAANRLPLNLLGLLQYIGPTIMMLCVSFL  255 (256)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHHHHh
Confidence            12455555666  999999999999999 5  9999999999999999864

This uncharacterized protein is predicted to have many membrane-spanning domains.

>TIGR00817 tpt Tpt phosphate/phosphoenolpyruvate translocator

Probab=99.93  E-value=1.3e-24  Score=204.40  Aligned_cols=263  Identities=13%  Similarity=0.074  Sum_probs=199.8

Q ss_pred             HHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHhhcccChhhHH
Q 019995           27 NMEVIKAAMSKGINKYVIIVYSDALSSLFFLFCSFLFHRSERPQLTFSILCSFFLLSVFGCSSQIFSFVGIQYSSPTLST  106 (332)
Q Consensus        27 ~~v~~K~~~~~~~~p~~~~~~R~~~a~l~ll~~~~~~~~~~~~~~~~~~~~~~~~~gl~g~~~~~~~~~gl~~t~a~~as  106 (332)
                      ..+.-|.++++--+|...+..|+.++.+.+.+... ...+++++.++++++.....|++++..+.+.++|++|++++.++
T Consensus        17 ~~~~NK~~l~~~~~P~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~l~~~s~s~~~   95 (302)
T TIGR00817        17 FNIYNKKLLNVFPYPYFKTLISLAVGSLYCLLSWS-SGLPKRLKISSALLKLLLPVAIVHTIGHVTSNVSLSKVAVSFTH   95 (302)
T ss_pred             HHHHHHHHHhhCChhHHHHHHHHHHHHHHHHHHHH-hCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHH
Confidence            33567999975467999999999999877655421 11223446678899999999999988889999999999999999


Q ss_pred             HhhhhhHHHHHHHHHHHHhhccccccccccchhhhhhheeccceeeeecCCCCCcCCCCCCCCCCcccCCCCccchhHHH
Q 019995          107 AMLNLIPAFTFVLAIIFRLEKLNWENKSSQAKSLGTFASIGGAFVVTFYKGPPLIGELSHSGSPRRLLLSPQLSWILGGF  186 (332)
Q Consensus       107 ii~~~~Pv~~~ila~l~~~E~l~~~~~~~~~k~iGi~l~~~Gv~ll~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~G~~  186 (332)
                      ++.+++|+++++++++++|||++++      +++|++++++|+.+..   +.+                 .+ ....|++
T Consensus        96 li~~~~Pv~~~ll~~~~~~e~~~~~------~~~~l~l~~~Gv~l~~---~~~-----------------~~-~~~~G~~  148 (302)
T TIGR00817        96 TIKAMEPFFSVVLSAFFLGQEFPST------LWLSLLPIVGGVALAS---DTE-----------------LS-FNWAGFL  148 (302)
T ss_pred             HHHhcchHHHHHHHHHHhCCCCcHH------HHHHHHHHHHHHhhhc---CCc-----------------cc-ccHHHHH
Confidence            9999999999999999999999876      4999999999997643   111                 11 1246999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHH--hcchhHHHHHHHHHHHHHHHHHHHHHHcCCCC---Ccc-----ccchhhHHHHHHHh
Q 019995          187 FLAAEAFMNSAWFILQALILR--KFAAVLIIMFYLFFFNTILSTAFALIVVSEPS---DWK-----LGLDIGLVAVLYSV  256 (332)
Q Consensus       187 l~L~aa~~~A~~~vl~~~~~~--~~~~~~~~~~~~~~~g~i~l~~~~~~~~~~~~---~~~-----~~~~~~~~~l~~~g  256 (332)
                      +.++|+++||.|.++.||..+  +. |+...+.|++..+++.++|.....|+...   .+.     ......+...++. 
T Consensus       149 ~~l~a~~~~a~~~v~~k~~~~~~~~-~~~~~~~~~~~~~~~~l~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-  226 (302)
T TIGR00817       149 SAMISNITFVSRNIFSKKAMTIKSL-DKTNLYAYISIMSLFLLSPPAFITEGPPFLPHGFMQAISGVNVTKIYTVSLVA-  226 (302)
T ss_pred             HHHHHHHHHHHHHHHHHHhhccCCC-CcccHHHHHHHHHHHHHHHHHHHHcchHHHHHHHHHhhcccCchHHHHHHHHH-
Confidence            999999999999999999877  66 58899999999999999998766553211   110     0000111111122 


Q ss_pred             hHHHH----HHHHHHhccc-h--hhhhhchHHHHHHHHHHHHhCCccccchhh---hhhheeeeeeeccCCcc
Q 019995          257 SSYWH----WVSSWLVHMV-P--VENWTSLCINVQALGHCLLYCHGCRHCRRR---FLSWKVLLINFFSNDFR  319 (332)
Q Consensus       257 t~i~~----~l~~~~l~~~-~--~s~~~~l~Pv~a~il~~~~LgE~~~~~~~~---~~~~~~~~~~~~~~~~~  319 (332)
                      +..++    .++++++++. |  .+++.+++|++++++|++++||+++..+-.   .+..|+.+-+..|+|-+
T Consensus       227 ~~~~~~~~~~~~~~~l~~~sa~t~sv~~~l~pv~~~~~~~~~lge~lt~~~~~G~~lil~Gv~l~~~~k~~~~  299 (302)
T TIGR00817       227 AMGFFHFYQQVAFMLLGRVSPLTHSVGNCMKRVVVIVVSILFFGTKISPQQVFGTGIAIAGVFLYSRVKAQKP  299 (302)
T ss_pred             HHHHHHHHHHHHHHHHccCCchHHHHHhhhhhhheeeeehhhcCCCCchhHHHHHHHHHHHHHHHHHHhccCc
Confidence            22233    3455789999 6  899999999999999999999999987665   57888887776666543

specificities overlap.

>PTZ00343 triose or hexose phosphate/phosphate translocator; Provisional

Probab=99.91  E-value=1.8e-22  Score=193.83  Aligned_cols=262  Identities=14%  Similarity=0.139  Sum_probs=197.5

Q ss_pred             HHHHHHHHHHHhCCCC-hHHHHHHHHHHHHHHHHHHHHHhhcCCCCCC--CHHHHHHHHHHHHHHHHHHHHHHHhhcccC
Q 019995           25 VSNMEVIKAAMSKGIN-KYVIIVYSDALSSLFFLFCSFLFHRSERPQL--TFSILCSFFLLSVFGCSSQIFSFVGIQYSS  101 (332)
Q Consensus        25 g~~~v~~K~~~~~~~~-p~~~~~~R~~~a~l~ll~~~~~~~~~~~~~~--~~~~~~~~~~~gl~g~~~~~~~~~gl~~t~  101 (332)
                      .......|.+++. +| |..++.+|++++.++...+.... .+++++.  .+++++.++.+|+++...+...+.|+++++
T Consensus        62 ~~~~~~nK~vl~~-~~~P~~l~~~~~~~~~l~~~~~~~~~-~~~~~~~~~~~~~~~~llp~gl~~~~~~~~~~~sl~~~s  139 (350)
T PTZ00343         62 VLYVVDNKLALNM-LPLPWTISSLQLFVGWLFALLYWATG-FRKIPRIKSLKLFLKNFLPQGLCHLFVHFGAVISMGLGA  139 (350)
T ss_pred             HHHHHHHHHHHHh-CChhHHHHHHHHHHHHHHHHHHHHhC-CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence            3445668999886 99 99999999999988765543222 2222334  245778899999999545666779999999


Q ss_pred             hhhHHHhhhhhHHHHHHHHHHHHhhccccccccccchhhhhhheeccceeeeecCCCCCcCCCCCCCCCCcccCCCCccc
Q 019995          102 PTLSTAMLNLIPAFTFVLAIIFRLEKLNWENKSSQAKSLGTFASIGGAFVVTFYKGPPLIGELSHSGSPRRLLLSPQLSW  181 (332)
Q Consensus       102 a~~asii~~~~Pv~~~ila~l~~~E~l~~~~~~~~~k~iGi~l~~~Gv~ll~~~~g~~~~~~~~~~~~~~~~~~~~~~~~  181 (332)
                      ++.++++.++.|+++++++++++|||++++      +++|+++.++|+.+.+.   .+                 .+. .
T Consensus       140 vs~~~iika~~Pvft~lls~~~l~ek~s~~------~~l~l~l~v~Gv~l~~~---~~-----------------~~~-~  192 (350)
T PTZ00343        140 VSFTHVVKAAEPVFTALLSILFLKQFLNLY------AYLSLIPIVGGVALASV---KE-----------------LHF-T  192 (350)
T ss_pred             HHHHHHHHHhhHHHHHHHHHHHhCCCccHH------HHHHHHHHHHHHHheec---cc-----------------chh-H
Confidence            999999999999999999999999999876      59999999999988652   11                 111 2


Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHhcc------hhHHHHHHHHHHHHHHHHHHHHHHcCCC--CCcc----ccchhhH
Q 019995          182 ILGGFFLAAEAFMNSAWFILQALILRKFA------AVLIIMFYLFFFNTILSTAFALIVVSEP--SDWK----LGLDIGL  249 (332)
Q Consensus       182 ~~G~~l~L~aa~~~A~~~vl~~~~~~~~~------~~~~~~~~~~~~g~i~l~~~~~~~~~~~--~~~~----~~~~~~~  249 (332)
                      ..|++++++|+++||.++++.||..++.+      ++.....++...|++.++|+....|.+.  ..+.    ......+
T Consensus       193 ~~G~~~~l~s~~~~a~~~i~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lp~~~~~e~~~~~~~~~~~~~~~~~~~~  272 (350)
T PTZ00343        193 WLAFWCAMLSNLGSSLRSIFAKKTMKNKSEIGENLTASNIYMLLTLIASLISLPLVLFFEGKKWVPVWTNYTANMTNYTK  272 (350)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhcccccccccCCHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhhhcccccch
Confidence            56999999999999999999999876531      3555666668899999999877555321  1110    0001111


Q ss_pred             HHHHHHh--hHHHHHHHHH----Hhccc-h--hhhhhchHHHHHHHHHHHHhCCccccchhh---hhhheeeeeeecc
Q 019995          250 VAVLYSV--SSYWHWVSSW----LVHMV-P--VENWTSLCINVQALGHCLLYCHGCRHCRRR---FLSWKVLLINFFS  315 (332)
Q Consensus       250 ~~l~~~g--t~i~~~l~~~----~l~~~-~--~s~~~~l~Pv~a~il~~~~LgE~~~~~~~~---~~~~~~~~~~~~~  315 (332)
                      ..+++..  ++++|.+|+.    ++++. |  .++..+++|++++++|++++||+++..+-.   .++.|+.+-|.+|
T Consensus       273 ~~~l~~i~~s~l~~~l~n~~~f~~l~~~s~~t~sv~~~lk~V~~iv~s~l~~ge~lt~~~~iG~~lii~Gv~lYs~~k  350 (350)
T PTZ00343        273 GIIIFKIFFSGVWYYLYNEVAFYCLGKVNQVTHAVANTLKRVVIIVSSIIIFQTQVTLLGYLGMAVAILGALLYSLFK  350 (350)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHhhhhHHHhCCCCchHhHHHHHHHHHHHHHHhhcC
Confidence            2222222  8899999995    99999 7  899999999999999999999999987766   5888887776654

>TIGR03340 phn_DUF6 phosphonate utilization associated putative membrane protein

Probab=99.90  E-value=1.1e-22  Score=189.58  Aligned_cols=257  Identities=11%  Similarity=-0.056  Sum_probs=178.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHhh-cCCCCCCCHHHHHHHHHHHHHHHHHHHH
Q 019995           14 SVGMVIVLLAQVSNMEVIKAAMSKGINKYVIIVYSDALSSLFFLFCSFLFH-RSERPQLTFSILCSFFLLSVFGCSSQIF   92 (332)
Q Consensus        14 ~l~li~~~~iwg~~~v~~K~~~~~~~~p~~~~~~R~~~a~l~ll~~~~~~~-~~~~~~~~~~~~~~~~~~gl~g~~~~~~   92 (332)
                      .+..+.++++|+...+..|...++ -++  ...+++..+++.+.|+...+. ++.+++.+++.+......++.+..++.+
T Consensus         3 ~~~~~~aa~~~a~~~~~~k~~~~~-~~~--~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   79 (281)
T TIGR03340         3 LTLVVFSALMHAGWNLMAKSHADK-EPD--FLWWALLAHSVLLTPYGLWYLAQVGWSRLPATFWLLLAISAVANMVYFLG   79 (281)
T ss_pred             HHHHHHHHHHHHHHHHHHhhcCCc-hhH--HHHHHHHHHHHHHHHHHHHhcccCCCCCcchhhHHHHHHHHHHHHHHHHH
Confidence            456778999999999999965544 344  357788888888888765431 2222333333333444444444899999


Q ss_pred             HHHhhcccChhhHHHhhhhhHHHHHHHHHHHHhhccccccccccchhhhhhheeccceeeeecCCCCCcCCCCCCCCCCc
Q 019995           93 SFVGIQYSSPTLSTAMLNLIPAFTFVLAIIFRLEKLNWENKSSQAKSLGTFASIGGAFVVTFYKGPPLIGELSHSGSPRR  172 (332)
Q Consensus        93 ~~~gl~~t~a~~asii~~~~Pv~~~ila~l~~~E~l~~~~~~~~~k~iGi~l~~~Gv~ll~~~~g~~~~~~~~~~~~~~~  172 (332)
                      ++.|+++++++.++.+.+++|+++.+++++++|||+++++      ++|+++++.|+.++... +.              
T Consensus        80 ~~~a~~~~~~~~~~~l~~~~p~~~~l~~~~~~~e~~~~~~------~~g~~~~~~Gv~ll~~~-~~--------------  138 (281)
T TIGR03340        80 LAQAYHHADVGLVYPLARSSPLLVAIWATLTLGETLSPLA------WLGILIITLGLLVLGLS-RF--------------  138 (281)
T ss_pred             HHHHHhcCChhhhhhHHhhhHHHHHHHHHHHHcCCCCHHH------HHHHHHHHHHHHHHhcc-cc--------------
Confidence            9999999999999999999999999999999999998764      99999999999876521 10              


Q ss_pred             ccCCCCccchhHHHHHHHHHHHHHHHHHHHHHHHHhcch---hHHHHHHHHHHHHHHHHHHHHHHcCCCCCccccchhhH
Q 019995          173 LLLSPQLSWILGGFFLAAEAFMNSAWFILQALILRKFAA---VLIIMFYLFFFNTILSTAFALIVVSEPSDWKLGLDIGL  249 (332)
Q Consensus       173 ~~~~~~~~~~~G~~l~L~aa~~~A~~~vl~~~~~~~~~~---~~~~~~~~~~~g~i~l~~~~~~~~~~~~~~~~~~~~~~  249 (332)
                          .+ ....|+.+.++++++|+.|++..|+..++.++   ....+.+++..+++.+.+.....+...  +.. ....+
T Consensus       139 ----~~-~~~~g~~~~l~aal~~a~~~i~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~-~~~~~  210 (281)
T TIGR03340       139 ----AQ-HRRKAYAWALAAALGTAIYSLSDKAAALGVPAFYSALGYLGIGFLAMGWPFLLLYLKRHGRS--MFP-YARQI  210 (281)
T ss_pred             ----cc-cchhHHHHHHHHHHHHHHhhhhccccccchhcccccHHHHHHHHHHHHHHHHHHHHHHhccc--hhh-hHHHH
Confidence                01 11357889999999999999988875444321   112233444333232222222112211  111 11233


Q ss_pred             HHHHHHh---hHHHHHHHHHHhccc-h--hhhhhchHHHHHHHHHHHHhCCccccchhh
Q 019995          250 VAVLYSV---SSYWHWVSSWLVHMV-P--VENWTSLCINVQALGHCLLYCHGCRHCRRR  302 (332)
Q Consensus       250 ~~l~~~g---t~i~~~l~~~~l~~~-~--~s~~~~l~Pv~a~il~~~~LgE~~~~~~~~  302 (332)
                      ..+++.+   ++++|.+|++++++. +  ++.+.+++|++++++|++++||+++..+-.
T Consensus       211 ~~~~~~~~~~s~l~~~l~~~al~~~~a~~~~~~~~l~pv~a~l~g~~~lgE~~~~~~~i  269 (281)
T TIGR03340       211 LPSATLGGLMIGGAYALVLWAMTRLPVATVVALRNTSIVFAVVLGIWFLNERWYLTRLM  269 (281)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhCCceEEEeecccHHHHHHHHHHHHhCCCccHHHHH
Confidence            4444454   889999999999999 5  899999999999999999999999875544

This family of hydrophobic proteins has some homology to families of integral membrane proteins such as (pfam00892) and may be a permease. It occurs in the vicinity of various types of operons for the catabolism of phosphonates in Vibrio, Pseudomonas, Polaromonas and Thiomicrospira.

>COG0697 RhaT Permeases of the drug/metabolite transporter (DMT) superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / General function prediction only]

Probab=99.88  E-value=3.7e-20  Score=170.95  Aligned_cols=272  Identities=16%  Similarity=0.186  Sum_probs=196.2

Q ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHHH-HH
Q 019995           10 AALPSVGMVIVLLAQVSNMEVIKAAMSKGINKYVIIVYSDALSSLFFLFCSFLFHRSERPQLTFSILCSFFLLSVFG-CS   88 (332)
Q Consensus        10 ~~~~~l~li~~~~iwg~~~v~~K~~~~~~~~p~~~~~~R~~~a~l~ll~~~~~~~~~~~~~~~~~~~~~~~~~gl~g-~~   88 (332)
                      ........++..+.|+.+....|...++..++....+.|+..+.++..+.... ++..+++ ..+.++.....+.++ ..
T Consensus         5 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~-~~~~~~~~~~~~~~~~~~   82 (292)
T COG0697           5 LLLGLLALLLWGLLWGLSFIALKLAVESLDPFLFAAALRFLIAALLLLPLLLL-EPRGLRP-ALRPWLLLLLLALLGLAL   82 (292)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhcccCChHHHHHHHHHHHHHHHHHHHHh-hcccccc-cccchHHHHHHHHHHHHH
Confidence            44566777788899999999999987654677777777999999885544322 1111111 112234455666666 89


Q ss_pred             HHHHHHHhhcccChhhHHHhhhhhHHHHHHHHH-HHHhhccccccccccchhhhhhheeccceeeeecCCCCCcCCCCCC
Q 019995           89 SQIFSFVGIQYSSPTLSTAMLNLIPAFTFVLAI-IFRLEKLNWENKSSQAKSLGTFASIGGAFVVTFYKGPPLIGELSHS  167 (332)
Q Consensus        89 ~~~~~~~gl~~t~a~~asii~~~~Pv~~~ila~-l~~~E~l~~~~~~~~~k~iGi~l~~~Gv~ll~~~~g~~~~~~~~~~  167 (332)
                      .+.+++.++++++++.++.+.+++|+++.+++. ++++||++++      +++|++++++|++++....+          
T Consensus        83 ~~~~~~~~~~~~~~~~~~~l~~~~p~~~~~~~~~~~~~e~~~~~------~~~~~~~~~~Gv~lv~~~~~----------  146 (292)
T COG0697          83 PFLLLFLALKYTSASVASLIIGLLPLFTALLAVLLLLGERLSLL------QILGILLALAGVLLILLGGG----------  146 (292)
T ss_pred             HHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHccCCCcHH------HHHHHHHHHHhHHheecCCC----------
Confidence            999999999999999999999999999999997 6679999876      49999999999998762211          


Q ss_pred             CCCCcccCCCCcc-chhHHHHHHHHHHHHHHHHHHHHHHHHhcchhHHHHH-HHHHHHHHHHHHHHHHHcCCCCCccccc
Q 019995          168 GSPRRLLLSPQLS-WILGGFFLAAEAFMNSAWFILQALILRKFAAVLIIMF-YLFFFNTILSTAFALIVVSEPSDWKLGL  245 (332)
Q Consensus       168 ~~~~~~~~~~~~~-~~~G~~l~L~aa~~~A~~~vl~~~~~~~~~~~~~~~~-~~~~~g~i~l~~~~~~~~~~~~~~~~~~  245 (332)
                               .+.. ...|+.+.+.++++||++.+..|+.. +. ++..... ++..  ...+...........  .+. .
T Consensus       147 ---------~~~~~~~~g~~~~l~a~~~~a~~~~~~~~~~-~~-~~~~~~~~~~~~--~~~~~~~~~~~~~~~--~~~-~  210 (292)
T COG0697         147 ---------GGGILSLLGLLLALAAALLWALYTALVKRLS-RL-GPVTLALLLQLL--LALLLLLLFFLSGFG--API-L  210 (292)
T ss_pred             ---------cchhHHHHHHHHHHHHHHHHHHHHHHHHHhc-CC-ChHHHHHHHHHH--HHHHHHHHHHhcccc--ccC-C
Confidence                     0111 36899999999999999999998876 44 3555555 5554  222222222222111  111 1


Q ss_pred             hhhHHHHHHHh---hHHHHHHHHHHhccc-h--hhhhhchHHHHHHHHHHHHhCCccccchhh---hhhheeeeeeecc
Q 019995          246 DIGLVAVLYSV---SSYWHWVSSWLVHMV-P--VENWTSLCINVQALGHCLLYCHGCRHCRRR---FLSWKVLLINFFS  315 (332)
Q Consensus       246 ~~~~~~l~~~g---t~i~~~l~~~~l~~~-~--~s~~~~l~Pv~a~il~~~~LgE~~~~~~~~---~~~~~~~~~~~~~  315 (332)
                      ...+..+.+.|   +++++.+|++++++. +  ++.+.+++|+++++++++++||+++..+-.   .++.|+.+.|..+
T Consensus       211 ~~~~~~~~~~g~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~l~~~e~~~~~~~~G~~li~~g~~l~~~~~  289 (292)
T COG0697         211 SRAWLLLLYLGVFSTGLAYLLWYYALRLLGASLVALLSLLEPVFAALLGVLLLGEPLSPAQLLGAALVVLGVLLASLRA  289 (292)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHHhccc
Confidence            12344445555   668999999999999 5  888889999999999999999999986665   5788888777663

>PF06027 DUF914: Eukaryotic protein of unknown function (DUF914); InterPro: IPR009262 This family consists of several hypothetical proteins of unknown function

Probab=99.79  E-value=5e-17  Score=153.89  Aligned_cols=279  Identities=14%  Similarity=0.106  Sum_probs=190.1

Q ss_pred             HHHHHHHHHHHHHHHhCC--CChHHHHHHHHHHHHHHHHHHHHHhhcC-CCCCCCHHHHHHHHHHHHHHHHHHHHHHHhh
Q 019995           21 LLAQVSNMEVIKAAMSKG--INKYVIIVYSDALSSLFFLFCSFLFHRS-ERPQLTFSILCSFFLLSVFGCSSQIFSFVGI   97 (332)
Q Consensus        21 ~~iwg~~~v~~K~~~~~~--~~p~~~~~~R~~~a~l~ll~~~~~~~~~-~~~~~~~~~~~~~~~~gl~g~~~~~~~~~gl   97 (332)
                      +++-.++.+.+...-+.+  .|..+......+++.+ ..+....++++ +..+.-+++|.+.+++|++....+++...|+
T Consensus        22 sl~~~~t~~~s~~l~~~~~~~P~~Qs~~~Y~~l~~v-y~~~~~~r~~~~~~~~~~~~~~w~y~lla~~Dv~aN~~~v~a~  100 (334)
T PF06027_consen   22 SLCITGTGTFSSLLANKGVNIPTFQSFFNYVLLALV-YTPILLYRRGFKKWLKVLKRPWWKYFLLALLDVEANYLVVLAY  100 (334)
T ss_pred             HHHHHhHHHHHHHHHhcCccCcHHHHHHHHHHHHHH-HhhhhhhccccccchhhcchhHHHHHHHHHHHHHHHHHHHHHh
Confidence            334455566655544444  4555555554444443 33433332221 1222234567777888999999999999999


Q ss_pred             cccChhhHHHhhhhhHHHHHHHHHHHHhhccccccccccchhhhhhheeccceeeeecCCCCCcCCCCCCCCCCcccCCC
Q 019995           98 QYSSPTLSTAMLNLIPAFTFVLAIIFRLEKLNWENKSSQAKSLGTFASIGGAFVVTFYKGPPLIGELSHSGSPRRLLLSP  177 (332)
Q Consensus        98 ~~t~a~~asii~~~~Pv~~~ila~l~~~E~l~~~~~~~~~k~iGi~l~~~Gv~ll~~~~g~~~~~~~~~~~~~~~~~~~~  177 (332)
                      +||+.+.+.++..++-+++.+++++++|||.++.      |++|++++++|+.+++..+...  .          ++...
T Consensus       101 ~yTsvtS~~lL~~~~i~~~~~LS~~fL~~ry~~~------~~~gv~i~i~Gv~lv~~sD~~~--~----------~~~~~  162 (334)
T PF06027_consen  101 QYTSVTSVQLLDCTSIPFVMILSFIFLKRRYSWF------HILGVLICIAGVVLVVVSDVLS--G----------SDSSS  162 (334)
T ss_pred             hcccHhHHHhhhhhhhHHHHHHHHHHHHhhhhHH------HHHHHHHHHhhhhheeeecccc--c----------ccCCC
Confidence            9999999999999999999999999999998765      5999999999998877442111  0          01112


Q ss_pred             CccchhHHHHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHHHHcCC-CCCccccchhhHHHHHHHh
Q 019995          178 QLSWILGGFFLAAEAFMNSAWFILQALILRKFAAVLIIMFYLFFFNTILSTAFALIVVSE-PSDWKLGLDIGLVAVLYSV  256 (332)
Q Consensus       178 ~~~~~~G~~l~L~aa~~~A~~~vl~~~~~~~~~~~~~~~~~~~~~g~i~l~~~~~~~~~~-~~~~~~~~~~~~~~l~~~g  256 (332)
                      +.+...||+++++++++||++++++++..|+.+ ......+..++|.+.+.+...++|.. ....++.+......+.|.-
T Consensus       163 ~~~~i~GDll~l~~a~lya~~nV~~E~~v~~~~-~~~~lg~~Glfg~ii~~iq~~ile~~~i~~~~w~~~~~~~~v~~~~  241 (334)
T PF06027_consen  163 GSNPILGDLLALLGAILYAVSNVLEEKLVKKAP-RVEFLGMLGLFGFIISGIQLAILERSGIESIHWTSQVIGLLVGYAL  241 (334)
T ss_pred             CCccchhHHHHHHHHHHHHHHHHHHHHhcccCC-HHHHHHHHHHHHHHHHHHHHHheehhhhhccCCChhhHHHHHHHHH
Confidence            345589999999999999999999999999985 67778888889999888776666653 1211221221111111221


Q ss_pred             -hHHHHHHHHHHhccc-h--hhhhhchHHHHHHHHHHHHhCCccccchhh---hhhheeeeeeeccCCcc
Q 019995          257 -SSYWHWVSSWLVHMV-P--VENWTSLCINVQALGHCLLYCHGCRHCRRR---FLSWKVLLINFFSNDFR  319 (332)
Q Consensus       257 -t~i~~~l~~~~l~~~-~--~s~~~~l~Pv~a~il~~~~LgE~~~~~~~~---~~~~~~~~~~~~~~~~~  319 (332)
                       ...-|.+.-..+++. |  ...=.....+.+++++++++||++++.--.   .++-|++.-|..+++.+
T Consensus       242 ~lf~~y~l~p~~l~~ssAt~~nLsLLTsd~~ali~~i~~f~~~~~~ly~~af~lIiiG~vvy~~~~~~~~  311 (334)
T PF06027_consen  242 CLFLFYSLVPIVLRMSSATFFNLSLLTSDFYALIIDIFFFGYKFSWLYILAFALIIIGFVVYNLAESPEE  311 (334)
T ss_pred             HHHHHHHHHHHHHHhCccceeehHHHHhhHHHHHHHHHhcCccccHHHHHHHHHHHHHhheEEccCCccc
Confidence             334444555666666 5  233333568899999999999999885444   48899999998766554

Some of the sequences in this family are annotated as putative membrane proteins.

>TIGR00776 RhaT RhaT L-rhamnose-proton symporter family protein

Probab=99.77  E-value=7.7e-17  Score=151.03  Aligned_cols=259  Identities=12%  Similarity=0.053  Sum_probs=182.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHHHHHHHHHH
Q 019995           14 SVGMVIVLLAQVSNMEVIKAAMSKGINKYVIIVYSDALSSLFFLFCSFLFHRSERPQLTFSILCSFFLLSVFGCSSQIFS   93 (332)
Q Consensus        14 ~l~li~~~~iwg~~~v~~K~~~~~~~~p~~~~~~R~~~a~l~ll~~~~~~~~~~~~~~~~~~~~~~~~~gl~g~~~~~~~   93 (332)
                      ++..++++++||++.+..|.. . +.++.++.  |..++.+++..+....++ .+ +..++.+..-++-|++-...+.++
T Consensus         3 ~l~~lia~~~wGs~g~~~k~~-~-g~~~~~~~--~~~~g~l~~~~~~~~~~~-~~-~~~~~~~~~g~l~G~~w~ig~~~~   76 (290)
T TIGR00776         3 ILIALIPALFWGSFVLINVKI-G-GGPYSQTL--GTTFGALILSIAIAIFVL-PE-FWALSIFLVGLLSGAFWALGQINQ   76 (290)
T ss_pred             hHHHHHHHHHHhhhHHHHhcc-C-CCHHHHHH--HHHHHHHHHHHHHHHHhC-Cc-ccccHHHHHHHHHHHHHHhhhhhH
Confidence            567788999999999999985 3 68888876  888888877665554322 11 112333444455555557888999


Q ss_pred             HHhhcccChhhHHHhhh-hhHHHHHHHHHHHHhhccccccccccchhhhhhheeccceeeeecCCCCCcCCCCCCCCCCc
Q 019995           94 FVGIQYSSPTLSTAMLN-LIPAFTFVLAIIFRLEKLNWENKSSQAKSLGTFASIGGAFVVTFYKGPPLIGELSHSGSPRR  172 (332)
Q Consensus        94 ~~gl~~t~a~~asii~~-~~Pv~~~ila~l~~~E~l~~~~~~~~~k~iGi~l~~~Gv~ll~~~~g~~~~~~~~~~~~~~~  172 (332)
                      +.+.++++.+.+-.+.+ ++|++..+.+.+++|||.+++++  ....+|+++.++|+.++...++++.            
T Consensus        77 ~~ai~~~gva~a~~i~~~~~~v~~~l~~~~~f~e~~t~~~~--~~~~~g~~l~l~G~~l~~~~~~~~~------------  142 (290)
T TIGR00776        77 FKSMRYMGVSKTMPISTGFQLVGGTLFGVIVFGEWSTSIQT--LLGLLALILIIIGVYLTSRSKDKSA------------  142 (290)
T ss_pred             HHHHHHHhHHHHhHHHHHHHHHHHHHHHHHHhhhccchHHH--HHHHHHHHHHHHhHheEEecccccc------------
Confidence            99999999999988888 88999999999999999876531  1238999999999988753221100            


Q ss_pred             ccCCCCccchhHHHHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHH---HHHHHHHHHHHHHcCCCCCccccchhhH
Q 019995          173 LLLSPQLSWILGGFFLAAEAFMNSAWFILQALILRKFAAVLIIMFYLFF---FNTILSTAFALIVVSEPSDWKLGLDIGL  249 (332)
Q Consensus       173 ~~~~~~~~~~~G~~l~L~aa~~~A~~~vl~~~~~~~~~~~~~~~~~~~~---~g~i~l~~~~~~~~~~~~~~~~~~~~~~  249 (332)
                       ++....+...|..+.++|+++|+.|.+..|+.  ++ +|...++.|+.   .++....+..  ...+  .+.  ....+
T Consensus       143 -~~~~~~~~~~Gi~~~l~sg~~y~~~~~~~~~~--~~-~~~~~~~~~~~g~~~~~~~~~~~~--~~~~--~~~--~~~~~  212 (290)
T TIGR00776       143 -GIKSEFNFKKGILLLLMSTIGYLVYVVVAKAF--GV-DGLSVLLPQAIGMVIGGIIFNLGH--ILAK--PLK--KYAIL  212 (290)
T ss_pred             -ccccccchhhHHHHHHHHHHHHHHHHHHHHHc--CC-CcceehhHHHHHHHHHHHHHHHHH--hccc--chH--HHHHH
Confidence             00000223579999999999999999997764  35 57877666654   3333332221  1111  121  12223


Q ss_pred             HHHHHHh--hHHHHHHHHHHhc-cc-h--hhhhhchHHHHHHHHHHHHhCCccccchhhh
Q 019995          250 VAVLYSV--SSYWHWVSSWLVH-MV-P--VENWTSLCINVQALGHCLLYCHGCRHCRRRF  303 (332)
Q Consensus       250 ~~l~~~g--t~i~~~l~~~~l~-~~-~--~s~~~~l~Pv~a~il~~~~LgE~~~~~~~~~  303 (332)
                      ..++ .|  +++++.+|..+.+ +. +  ++..+.++|+++++++++++||+.+..+.+.
T Consensus       213 ~~~~-~Gi~~~ia~~~y~~~~~~~~~~~~~~~ls~~~pvia~~~~v~~l~E~~~~~~~~~  271 (290)
T TIGR00776       213 LNIL-PGLMWGIGNFFYLFSAQPKVGVATSFSLSQLGVIISTLGGILILGEKKTKREMIA  271 (290)
T ss_pred             HHHH-HHHHHHHHHHHHHHHcccccchhhHHHHHHHHHHHHHHHHHHHhccCCCcceeeh
Confidence            3333 55  8899999999999 66 4  8899999999999999999999999888743

These proteins are members of the L-Rhamnose Symporter (RhaT) Family (TC 2.A.7). This family includes two characterized members, both of which function as L-rhamnose:H+ symporters and have 10 GES predicted transmembrane domains.

>COG5006 rhtA Threonine/homoserine efflux transporter [Amino acid transport and metabolism]

Probab=99.73  E-value=5.1e-16  Score=138.20  Aligned_cols=262  Identities=11%  Similarity=0.026  Sum_probs=196.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHHHHHHHHH
Q 019995           13 PSVGMVIVLLAQVSNMEVIKAAMSKGINKYVIIVYSDALSSLFFLFCSFLFHRSERPQLTFSILCSFFLLSVFGCSSQIF   92 (332)
Q Consensus        13 ~~l~li~~~~iwg~~~v~~K~~~~~~~~p~~~~~~R~~~a~l~ll~~~~~~~~~~~~~~~~~~~~~~~~~gl~g~~~~~~   92 (332)
                      +++.+..++..-=+..-+.|..... ..|.-.+.+|..+++++++++.    |-.+++.+++++..+...|..-...+.+
T Consensus        13 p~~~ll~amvsiq~Gas~Ak~LFP~-vG~~g~t~lRl~~aaLIll~l~----RPwr~r~~~~~~~~~~~yGvsLg~MNl~   87 (292)
T COG5006          13 PILALLVAMVSIQSGASFAKSLFPL-VGAAGVTALRLAIAALILLALF----RPWRRRLSKPQRLALLAYGVSLGGMNLL   87 (292)
T ss_pred             cHHHHHHHHHHHHhhHHHHHHHccc-cChhhHHHHHHHHHHHHHHHHh----hHHHhccChhhhHHHHHHHHHHHHHHHH
Confidence            6778887777777778889988775 8999999999999999998763    2233467788888999999887788899


Q ss_pred             HHHhhcccChhhHHHhhhhhHHHHHHHHHHHHhhccccccccccchhhhhhheeccceeeeecCCCCCcCCCCCCCCCCc
Q 019995           93 SFVGIQYSSPTLSTAMLNLIPAFTFVLAIIFRLEKLNWENKSSQAKSLGTFASIGGAFVVTFYKGPPLIGELSHSGSPRR  172 (332)
Q Consensus        93 ~~~gl~~t~a~~asii~~~~Pv~~~ila~l~~~E~l~~~~~~~~~k~iGi~l~~~Gv~ll~~~~g~~~~~~~~~~~~~~~  172 (332)
                      +|.+++..|-+.+..+.++.|+..++++-    .|.        ...+-+.+++.|+.++. ..+.+             
T Consensus        88 FY~si~riPlGiAVAiEF~GPL~vA~~~s----Rr~--------~d~vwvaLAvlGi~lL~-p~~~~-------------  141 (292)
T COG5006          88 FYLSIERIPLGIAVAIEFTGPLAVALLSS----RRL--------RDFVWVALAVLGIWLLL-PLGQS-------------  141 (292)
T ss_pred             HHHHHHhccchhhhhhhhccHHHHHHHhc----cch--------hhHHHHHHHHHHHHhhe-eccCC-------------
Confidence            99999999999999999999998776543    111        12455778888987765 22211             


Q ss_pred             ccCCCCccchhHHHHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHHHHcCCCCCccccchhhH--H
Q 019995          173 LLLSPQLSWILGGFFLAAEAFMNSAWFILQALILRKFAAVLIIMFYLFFFNTILSTAFALIVVSEPSDWKLGLDIGL--V  250 (332)
Q Consensus       173 ~~~~~~~~~~~G~~l~L~aa~~~A~~~vl~~~~~~~~~~~~~~~~~~~~~g~i~l~~~~~~~~~~~~~~~~~~~~~~--~  250 (332)
                          .+.....|..+.+++..||++|++..+|.-+..+ ...-+...+.++++..+|++....+ +.-++  +....  +
T Consensus       142 ----~~~lDp~Gv~~Al~AG~~Wa~YIv~G~r~g~~~~-g~~g~a~gm~vAaviv~Pig~~~ag-~~l~~--p~ll~laL  213 (292)
T COG5006         142 ----VWSLDPVGVALALGAGACWALYIVLGQRAGRAEH-GTAGVAVGMLVAALIVLPIGAAQAG-PALFS--PSLLPLAL  213 (292)
T ss_pred             ----cCcCCHHHHHHHHHHhHHHHHHHHHcchhcccCC-CchHHHHHHHHHHHHHhhhhhhhcc-hhhcC--hHHHHHHH
Confidence                1222368999999999999999999998865554 3444678888999999998764322 21111  11111  2


Q ss_pred             HHHHHhhHHHHHHHHHHhccch---hhhhhchHHHHHHHHHHHHhCCccccchhh---hhhheeeeeee
Q 019995          251 AVLYSVSSYWHWVSSWLVHMVP---VENWTSLCINVQALGHCLLYCHGCRHCRRR---FLSWKVLLINF  313 (332)
Q Consensus       251 ~l~~~gt~i~~~l~~~~l~~~~---~s~~~~l~Pv~a~il~~~~LgE~~~~~~~~---~~~~~~~~~~~  313 (332)
                      .+..++|++.|.+--.+++|.|   .+....+||.++++.|+++|||.++..+-.   .++-.+.++-.
T Consensus       214 gvavlSSalPYsLEmiAL~rlp~~~F~~LlSLePa~aAl~G~i~L~e~ls~~qwlaI~~ViaAsaG~~l  282 (292)
T COG5006         214 GVAVLSSALPYSLEMIALRRLPARTFGTLLSLEPALAALSGLIFLGETLTLIQWLAIAAVIAASAGSTL  282 (292)
T ss_pred             HHHHHhcccchHHHHHHHhhCChhHHHHHHHhhHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhcccc
Confidence            2233349999999999999994   999999999999999999999999987765   35555554443

>COG2962 RarD Predicted permeases [General function prediction only]

Probab=99.71  E-value=1.9e-15  Score=137.68  Aligned_cols=257  Identities=12%  Similarity=0.027  Sum_probs=190.9

Q ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHhhcCCC---CCCCHHHHHHHHHHHHHH
Q 019995           10 AALPSVGMVIVLLAQVSNMEVIKAAMSKGINKYVIIVYSDALSSLFFLFCSFLFHRSER---PQLTFSILCSFFLLSVFG   86 (332)
Q Consensus        10 ~~~~~l~li~~~~iwg~~~v~~K~~~~~~~~p~~~~~~R~~~a~l~ll~~~~~~~~~~~---~~~~~~~~~~~~~~gl~g   86 (332)
                      ..++++..+.+.++||..+...|.. ++ .|+..+.++|...+.++++......++.+.   ...+.|.+..+.+.+++-
T Consensus         5 ~~~Gil~~l~Ay~lwG~lp~y~kll-~~-~~~~eIlahRviwS~~~~l~ll~~~r~~~~~~~~~~~p~~~~~~~l~a~li   82 (293)
T COG2962           5 SRKGILLALLAYLLWGLLPLYFKLL-EP-LPATEILAHRVIWSFPFMLALLFLLRQWRELKQLLKQPKTLLMLALTALLI   82 (293)
T ss_pred             ccchhHHHHHHHHHHHHHHHHHHHH-cc-CCHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhCcHHHHHHHHHHHHH
Confidence            3578999999999999999999974 54 999999999999999988876555433221   122345566666677776


Q ss_pred             HHHHHHHHHhhcccChhhHHHhhhhhHHHHHHHHHHHHhhccccccccccchhhhhhheeccceeeeecCCCCCcCCCCC
Q 019995           87 CSSQIFSFVGIQYSSPTLSTAMLNLIPAFTFVLAIIFRLEKLNWENKSSQAKSLGTFASIGGAFVVTFYKGPPLIGELSH  166 (332)
Q Consensus        87 ~~~~~~~~~gl~~t~a~~asii~~~~Pv~~~ila~l~~~E~l~~~~~~~~~k~iGi~l~~~Gv~ll~~~~g~~~~~~~~~  166 (332)
                      ..+...+.|+...-..-++|+=.+..|++.++++.+++|||+++-      |+++++++.+||.......|         
T Consensus        83 ~~nW~lfiWAvn~g~~leaSLGY~InPL~~VllG~lflkErls~~------Q~iAV~lA~~GV~~~~~~~g---------  147 (293)
T COG2962          83 GLNWWLFIWAVNNGHVLEASLGYFINPLVNVLLGRLFLKERLSRL------QWIAVGLAAAGVLIQTWLLG---------  147 (293)
T ss_pred             HHHHHHhheecCCCchhHHHhHHHHHHHHHHHHHHHHHHhhccHH------HHHHHHHHHHHHHHHHHHcC---------
Confidence            899999999999999999999999999999999999999999765      59999999999987553211         


Q ss_pred             CCCCCcccCCCCccchhHHHHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHHHHcCCCCCccccch
Q 019995          167 SGSPRRLLLSPQLSWILGGFFLAAEAFMNSAWFILQALILRKFAAVLIIMFYLFFFNTILSTAFALIVVSEPSDWKLGLD  246 (332)
Q Consensus       167 ~~~~~~~~~~~~~~~~~G~~l~L~aa~~~A~~~vl~~~~~~~~~~~~~~~~~~~~~g~i~l~~~~~~~~~~~~~~~~~~~  246 (332)
                                 +..+     ..+.=+++|+.|..+ ||.+ +.+ ..+-....+..-.+..+......+.+.........
T Consensus       148 -----------~lpw-----val~la~sf~~Ygl~-RK~~-~v~-a~~g~~lE~l~l~p~al~yl~~l~~~~~~~~~~~~  208 (293)
T COG2962         148 -----------SLPW-----VALALALSFGLYGLL-RKKL-KVD-ALTGLTLETLLLLPVALIYLLFLADSGQFLQQNAN  208 (293)
T ss_pred             -----------CCcH-----HHHHHHHHHHHHHHH-HHhc-CCc-hHHhHHHHHHHHhHHHHHHHHHHhcCchhhhcCCc
Confidence                       1222     346678999999977 4443 333 34444455555555555544444432210111112


Q ss_pred             hhHHHHHHHh--hHHHHHHHHHHhccch---hhhhhchHHHHHHHHHHHHhCCccccchhh
Q 019995          247 IGLVAVLYSV--SSYWHWVSSWLVHMVP---VENWTSLCINVQALGHCLLYCHGCRHCRRR  302 (332)
Q Consensus       247 ~~~~~l~~~g--t~i~~~l~~~~l~~~~---~s~~~~l~Pv~a~il~~~~LgE~~~~~~~~  302 (332)
                      ..+.-++..|  |+++..++..+-+|.|   .+...|++|..--++|.+++||+++..+-.
T Consensus       209 ~~~~LLv~aG~vTavpL~lf~~aa~~lpls~~G~lqYi~Ptl~fllav~i~~E~~~~~~~~  269 (293)
T COG2962         209 SLWLLLVLAGLVTAVPLLLFAAAAKRLPLSTLGFLQYIEPTLMFLLAVLIFGEPFDSDQLV  269 (293)
T ss_pred             hHHHHHHHhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHH
Confidence            2344455666  9999999999999995   999999999999999999999999987765

>KOG4510 consensus Permease of the drug/metabolite transporter (DMT) superfamily [General function prediction only]

Probab=99.56  E-value=1.9e-15  Score=135.49  Aligned_cols=267  Identities=13%  Similarity=0.086  Sum_probs=177.8

Q ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHHHHHH
Q 019995           10 AALPSVGMVIVLLAQVSNMEVIKAAMSKGINKYVIIVYSDALSSLFFLFCSFLFHRSERPQLTFSILCSFFLLSVFGCSS   89 (332)
Q Consensus        10 ~~~~~l~li~~~~iwg~~~v~~K~~~~~~~~p~~~~~~R~~~a~l~ll~~~~~~~~~~~~~~~~~~~~~~~~~gl~g~~~   89 (332)
                      ..++..++.++ ..+-++.++.+...+  .||...+-.|+..-.+.-.|.....+.....+...|  +.+++.|+.|+.+
T Consensus        36 p~~gl~l~~vs-~ff~~~~vv~t~~~e--~~p~e~a~~r~l~~mlit~pcliy~~~~v~gp~g~R--~~LiLRg~mG~tg  110 (346)
T KOG4510|consen   36 PNLGLLLLTVS-YFFNSCMVVSTKVLE--NDPMELASFRLLVRMLITYPCLIYYMQPVIGPEGKR--KWLILRGFMGFTG  110 (346)
T ss_pred             CccCceehhhH-HHHhhHHHhhhhhhc--cChhHhhhhhhhhehhhhheEEEEEeeeeecCCCcE--EEEEeehhhhhhH
Confidence            33445555566 445555555555543  699999999966655555544322211111111222  3567899999778


Q ss_pred             HHHHHHhhcccChhhHHHhhhhhHHHHHHHHHHHHhhccccccccccchhhhhhheeccceeeeecCCCCCcCCCCCCCC
Q 019995           90 QIFSFVGIQYSSPTLSTAMLNLIPAFTFVLAIIFRLEKLNWENKSSQAKSLGTFASIGGAFVVTFYKGPPLIGELSHSGS  169 (332)
Q Consensus        90 ~~~~~~gl~~t~a~~asii~~~~Pv~~~ila~l~~~E~l~~~~~~~~~k~iGi~l~~~Gv~ll~~~~g~~~~~~~~~~~~  169 (332)
                      ..+.|++++|.+-+.|++|..++|+++.++++.++|||.+.      ...+|..+.+.|+++++   -+++.+..     
T Consensus       111 vmlmyya~~~mslaDA~vItFssPvft~ifaw~~LkE~~t~------~eaL~s~itl~GVVLIv---RPpFlFG~-----  176 (346)
T KOG4510|consen  111 VMLMYYALMYMSLADAVVITFSSPVFTIIFAWAFLKEPFTK------FEALGSLITLLGVVLIV---RPPFLFGD-----  176 (346)
T ss_pred             HHHHHHHHhhcchhheEEEEecChHHHHHHHHHHHcCCCcH------HHHHHHHHhhheEEEEe---cCCcccCC-----
Confidence            88888899999999999999999999999999999999875      45999999999999986   22221110     


Q ss_pred             CCcccCCCC-ccchhHHHHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHHHHcCCCCCccccchhh
Q 019995          170 PRRLLLSPQ-LSWILGGFFLAAEAFMNSAWFILQALILRKFAAVLIIMFYLFFFNTILSTAFALIVVSEPSDWKLGLDIG  248 (332)
Q Consensus       170 ~~~~~~~~~-~~~~~G~~l~L~aa~~~A~~~vl~~~~~~~~~~~~~~~~~~~~~g~i~l~~~~~~~~~~~~~~~~~~~~~  248 (332)
                      +.+++.+.. .....|....+.+++.-|.-.++.|++-|+.....+ ..+..+++.+..++..... +.. +|+- ....
T Consensus       177 ~t~g~~~s~~~~~~~gt~aai~s~lf~asvyIilR~iGk~~h~~ms-vsyf~~i~lV~s~I~~~~i-g~~-~lP~-cgkd  252 (346)
T KOG4510|consen  177 TTEGEDSSQVEYDIPGTVAAISSVLFGASVYIILRYIGKNAHAIMS-VSYFSLITLVVSLIGCASI-GAV-QLPH-CGKD  252 (346)
T ss_pred             CccccccccccccCCchHHHHHhHhhhhhHHHHHHHhhccccEEEE-ehHHHHHHHHHHHHHHhhc-cce-ecCc-cccc
Confidence            111111111 233567888888888888777777887677542233 3444556655554432211 111 1111 1123


Q ss_pred             HHHHHHHh--hHHHHHHHHHHhccc-h--hhhhhchHHHHHHHHHHHHhCCccccc
Q 019995          249 LVAVLYSV--SSYWHWVSSWLVHMV-P--VENWTSLCINVQALGHCLLYCHGCRHC  299 (332)
Q Consensus       249 ~~~l~~~g--t~i~~~l~~~~l~~~-~--~s~~~~l~Pv~a~il~~~~LgE~~~~~  299 (332)
                      ++-++.+|  +.+++.+.+.++++- +  +|+..+.+-++|.++..+++||.|++.
T Consensus       253 r~l~~~lGvfgfigQIllTm~lQiErAGpvaim~~~dvvfAf~wqv~ff~~~Pt~w  308 (346)
T KOG4510|consen  253 RWLFVNLGVFGFIGQILLTMGLQIERAGPVAIMTYTDVVFAFFWQVLFFGHWPTIW  308 (346)
T ss_pred             eEEEEEehhhhhHHHHHHHHHhhhhccCCeehhhHHHHHHHHHHHHHHhcCCChHH
Confidence            44444556  778889999998877 5  999999999999999999999999874

>PF00892 EamA: EamA-like transporter family; InterPro: IPR000620 This domain is found in proteins including the Erwinia chrysanthemi PecM protein, which is involved in pectinase, cellulase and blue pigment regulation; and the Salmonella typhimurium PagO protein, the function of which is unknown

Probab=99.47  E-value=6.8e-14  Score=113.12  Aligned_cols=123  Identities=18%  Similarity=0.332  Sum_probs=106.2

Q ss_pred             HHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHHH-HHHHHHHHHhhccc
Q 019995           22 LAQVSNMEVIKAAMSKGINKYVIIVYSDALSSLFFLFCSFLFHRSERPQLTFSILCSFFLLSVFG-CSSQIFSFVGIQYS  100 (332)
Q Consensus        22 ~iwg~~~v~~K~~~~~~~~p~~~~~~R~~~a~l~ll~~~~~~~~~~~~~~~~~~~~~~~~~gl~g-~~~~~~~~~gl~~t  100 (332)
                      ++||...++.|...++ .||....++|+..+++ +++.....+++...+.+.+++......|.++ ..++.+++.|++++
T Consensus         1 ~~~a~~~~~~k~~~~~-~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~   78 (126)
T PF00892_consen    1 FSWAIYSVFSKKLLKK-ISPLSITFWRFLIAGI-LLILLLILGRKPFKNLSPRQWLWLLFLGLLGTALAYLLYFYALKYI   78 (126)
T ss_pred             ceeeeHHHHHHHHhcc-CCHHHHHHHHHHHHHH-HHHHHHhhccccccCCChhhhhhhhHhhccceehHHHHHHHHHHhc
Confidence            3689999999998876 9999999999999998 5555555444333566677888888899987 89999999999999


Q ss_pred             ChhhHHHhhhhhHHHHHHHHHHHHhhccccccccccchhhhhhheeccceee
Q 019995          101 SPTLSTAMLNLIPAFTFVLAIIFRLEKLNWENKSSQAKSLGTFASIGGAFVV  152 (332)
Q Consensus       101 ~a~~asii~~~~Pv~~~ila~l~~~E~l~~~~~~~~~k~iGi~l~~~Gv~ll  152 (332)
                      +++.++.+.++.|+++.++++++++|+++++      +++|+++.+.|+.++
T Consensus        79 ~~~~~~~~~~~~pv~~~i~~~~~~~e~~~~~------~~~g~~l~~~g~~l~  124 (126)
T PF00892_consen   79 SASIVSILQYLSPVFAAILGWLFLGERPSWR------QIIGIILIIIGVVLI  124 (126)
T ss_pred             chhHHHHHHHHHHHHHHHHHHHHcCCCCCHH------HHHHHHHHHHHHHHH
Confidence            9999999999999999999999999999876      599999999998764

Many members of this family are classed as drug/metabolite transporters and have no known function. They are predicted to be integral membrane proteins and many of the proteins contain two copies of this domain [].; GO: 0016020 membrane

>PF08449 UAA: UAA transporter family; InterPro: IPR013657 This family includes transporters with a specificity for UDP-N-acetylglucosamine []

Probab=99.45  E-value=5.8e-11  Score=111.96  Aligned_cols=255  Identities=14%  Similarity=0.144  Sum_probs=182.7

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHhhcccChhhHHHhhhhhHHHHHHHH
Q 019995           41 KYVIIVYSDALSSLFFLFCSFLFHRSERPQLTFSILCSFFLLSVFGCSSQIFSFVGIQYSSPTLSTAMLNLIPAFTFVLA  120 (332)
Q Consensus        41 p~~~~~~R~~~a~l~ll~~~~~~~~~~~~~~~~~~~~~~~~~gl~g~~~~~~~~~gl~~t~a~~asii~~~~Pv~~~ila  120 (332)
                      |..+++.++..+.++-.+.....+++.+   ++..++.....+++..+...+.+.+++|.|...-.++-++.|+.+++++
T Consensus        32 ~~~lt~~q~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~al~~i~~p~~~~~ks~~~i~vmi~~  108 (303)
T PF08449_consen   32 PLFLTFVQFAFNALFSFILLSLFKFPKS---RKIPLKKYAILSFLFFLASVLSNAALKYISYPTQIVFKSSKPIPVMILG  108 (303)
T ss_pred             cHHHHHHHHHHHHHHHHHHHHhccccCC---CcChHHHHHHHHHHHHHHHHHHHHHHHhCChHHHHHHhhhHHHHHHHHH
Confidence            8899999999998877665444321222   2233556678888888999999999999999999999999999999999


Q ss_pred             HHHHhhccccccccccchhhhhhheeccceeeeecCCCCCcCCCCCCCCCCcccCCCCccchhHHHHHHHHHHHHHHHHH
Q 019995          121 IIFRLEKLNWENKSSQAKSLGTFASIGGAFVVTFYKGPPLIGELSHSGSPRRLLLSPQLSWILGGFFLAAEAFMNSAWFI  200 (332)
Q Consensus       121 ~l~~~E~l~~~~~~~~~k~iGi~l~~~Gv~ll~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~G~~l~L~aa~~~A~~~v  200 (332)
                      .+++|+|.+++      |++++++-.+|+++....+..+.+          + +...+.+...|+++.+++.++.|...+
T Consensus       109 ~l~~~k~y~~~------~~~~v~li~~Gv~~~~~~~~~~~~----------~-~~~~~~~~~~G~~ll~~sl~~~a~~~~  171 (303)
T PF08449_consen  109 VLILGKRYSRR------QYLSVLLITIGVAIFTLSDSSSSS----------S-SNSSSFSSALGIILLLLSLLLDAFTGV  171 (303)
T ss_pred             HHhcCccccHH------HHHHHHHHHhhHheeeeccccccc----------c-cccccccchhHHHHHHHHHHHHHHHHH
Confidence            99999887765      599999999999887654322110          0 011112223499999999999999999


Q ss_pred             HHHHHHHhcc-hhHHHHHHHHHHHHHHHHHHHHH--HcCCCCCcc---ccchhhHHHHHHHh--hHHHHHHHHHHhccc-
Q 019995          201 LQALILRKFA-AVLIIMFYLFFFNTILSTAFALI--VVSEPSDWK---LGLDIGLVAVLYSV--SSYWHWVSSWLVHMV-  271 (332)
Q Consensus       201 l~~~~~~~~~-~~~~~~~~~~~~g~i~l~~~~~~--~~~~~~~~~---~~~~~~~~~l~~~g--t~i~~~l~~~~l~~~-  271 (332)
                      .++|..++++ ++..+.++...++.+...+....  .++....++   .++. .+..++...  ..++.....+.+++. 
T Consensus       172 ~qe~~~~~~~~~~~~~mfy~n~~~~~~~~~~~~~l~~~~~~~~~~f~~~~p~-~~~~l~~~s~~~~~g~~~i~~~~~~~~  250 (303)
T PF08449_consen  172 YQEKLFKKYGKSPWELMFYTNLFSLPFLLILLFLLPTGEFRSAIRFISAHPS-VLLYLLLFSLTGALGQFFIFYLIKKFS  250 (303)
T ss_pred             HHHHHHHHhCCcHHHHHHHHHHHHHHHHHHHHHHHHhhHhhHHHHHHHHhHH-HHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence            9999977654 56677888989998888777665  222111111   1121 233333222  667777777788888 


Q ss_pred             h--hhhhhchHHHHHHHHHHHHhCCccccchhh---hhhheeeeeeeccC
Q 019995          272 P--VENWTSLCINVQALGHCLLYCHGCRHCRRR---FLSWKVLLINFFSN  316 (332)
Q Consensus       272 ~--~s~~~~l~Pv~a~il~~~~LgE~~~~~~~~---~~~~~~~~~~~~~~  316 (332)
                      |  .++...+--+++++++.+++||++++.+-.   .+..|..+-+.-||
T Consensus       251 al~~t~v~t~Rk~~sillS~~~f~~~~~~~~~~G~~lv~~g~~~~~~~~~  300 (303)
T PF08449_consen  251 ALTTTIVTTLRKFLSILLSVIIFGHPLSPLQWIGIVLVFAGIFLYSYAKK  300 (303)
T ss_pred             chhhhhHHHHHHHHHHHHHHHhcCCcCChHHHHHHHHhHHHHHHHHHhhc
Confidence            6  888888999999999999999999976654   35555555444444

; GO: 0055085 transmembrane transport

>KOG2765 consensus Predicted membrane protein [Function unknown]

Probab=99.39  E-value=8e-12  Score=117.17  Aligned_cols=217  Identities=18%  Similarity=0.200  Sum_probs=149.6

Q ss_pred             HHHHHHHHHHHHHHHhhcccChhhHHHhhhhhHHHHHHHHHHHHhhccccccccccchhhhhhheeccceeeeecCCCCC
Q 019995           81 LLSVFGCSSQIFSFVGIQYSSPTLSTAMLNLIPAFTFVLAIIFRLEKLNWENKSSQAKSLGTFASIGGAFVVTFYKGPPL  160 (332)
Q Consensus        81 ~~gl~g~~~~~~~~~gl~~t~a~~asii~~~~Pv~~~ila~l~~~E~l~~~~~~~~~k~iGi~l~~~Gv~ll~~~~g~~~  160 (332)
                      ....+.+..++.+..++.+|+++..+++.+++-+||..++.++..||+++.      |.+++.+++.|+++++..+....
T Consensus       164 ~fc~lWF~anl~~naALa~TsVAS~TilSStSs~FtL~la~if~~e~ft~s------Kllav~~si~GViiVt~~~s~~~  237 (416)
T KOG2765|consen  164 FFCPLWFLANLTSNAALAFTSVASTTILSSTSSFFTLFLAAIFPVERFTLS------KLLAVFVSIAGVIIVTMGDSKQN  237 (416)
T ss_pred             HHHHHHHHHHHHHHHHhhhhhhhhhhhhhhcchHHHHHHHHHcCcchhhHH------HHHHHHHhhccEEEEEecccccc
Confidence            344444888999999999999999999999999999999999999999865      69999999999998874422110


Q ss_pred             cCCCCCCCCCCcccCCCCccchhHHHHHHHHHHHHHHHHHHHHHHHHhcc---hhHHHHHHHHHHHHHHHHHHHHHHcC-
Q 019995          161 IGELSHSGSPRRLLLSPQLSWILGGFFLAAEAFMNSAWFILQALILRKFA---AVLIIMFYLFFFNTILSTAFALIVVS-  236 (332)
Q Consensus       161 ~~~~~~~~~~~~~~~~~~~~~~~G~~l~L~aa~~~A~~~vl~~~~~~~~~---~~~~~~~~~~~~g~i~l~~~~~~~~~-  236 (332)
                                  ++ .......+|+++++++|+.||+|+++.||...+..   |...+..+..++..+++.|...+... 
T Consensus       238 ------------~~-~~a~~~llG~llaL~sA~~YavY~vllk~~~~~eg~rvdi~lffGfvGLfnllllwP~l~iL~~~  304 (416)
T KOG2765|consen  238 ------------SD-LPASRPLLGNLLALLSALLYAVYTVLLKRKIGDEGERVDIQLFFGFVGLFNLLLLWPPLIILDFF  304 (416)
T ss_pred             ------------cc-CCccchhHHHHHHHHHHHHHHHHHHHHHhhcccccccccHHHHHHHHHHHHHHHHhHHHHHHHHh
Confidence                        01 11223478999999999999999999998765442   33344444445555555554433211 


Q ss_pred             CCCCccccchhhHHHHHHH---hhHHHHHHHHHHhccc-h--hhhhhchHHHHHHHHHHHHhCCcccc---chhhhhhhe
Q 019995          237 EPSDWKLGLDIGLVAVLYS---VSSYWHWVSSWLVHMV-P--VENWTSLCINVQALGHCLLYCHGCRH---CRRRFLSWK  307 (332)
Q Consensus       237 ~~~~~~~~~~~~~~~l~~~---gt~i~~~l~~~~l~~~-~--~s~~~~l~Pv~a~il~~~~LgE~~~~---~~~~~~~~~  307 (332)
                      ..+.++.+...+...+++.   ||.++-++|.++.-.. |  +..=..++...+++...++=|.++++   .+-+.+-.+
T Consensus       305 ~~e~F~lP~~~q~~~vv~~~ligtvvSDylW~~a~~lTs~Lv~TlgmSltIPLA~~aD~l~k~~~~S~~~iiGsi~Ifv~  384 (416)
T KOG2765|consen  305 GEERFELPSSTQFSLVVFNNLIGTVVSDYLWAKAVLLTSPLVVTLGMSLTIPLAMFADVLIKGKHPSALYIIGSIPIFVG  384 (416)
T ss_pred             ccCcccCCCCceeEeeeHhhHHHHHHHHHHHHHHHHhccchhheeeeeEeeeHHHHHHHHHcCCCCCHHHHHHHHHHHHH
Confidence            0111112122223233333   3999999999999888 7  44445567778999998877888876   333445556


Q ss_pred             eeeeeeccC
Q 019995          308 VLLINFFSN  316 (332)
Q Consensus       308 ~~~~~~~~~  316 (332)
                      -+++|.-.+
T Consensus       385 Fv~vn~~~~  393 (416)
T KOG2765|consen  385 FVIVNISSE  393 (416)
T ss_pred             Hhheecccc
Confidence            666776544

>COG2510 Predicted membrane protein [Function unknown]

Probab=99.38  E-value=3.7e-12  Score=102.52  Aligned_cols=134  Identities=13%  Similarity=0.133  Sum_probs=116.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHhhcCCC-CCCCHHHHHHHHHHHHHHHHHHH
Q 019995           13 PSVGMVIVLLAQVSNMEVIKAAMSKGINKYVIIVYSDALSSLFFLFCSFLFHRSER-PQLTFSILCSFFLLSVFGCSSQI   91 (332)
Q Consensus        13 ~~l~li~~~~iwg~~~v~~K~~~~~~~~p~~~~~~R~~~a~l~ll~~~~~~~~~~~-~~~~~~~~~~~~~~gl~g~~~~~   91 (332)
                      ..+..+++++.||...++.|+++++ .||..-++.|-.....++..+.+...+... ...+.|.|.++++-|+.+.....
T Consensus         4 ~~~~ALLsA~fa~L~~iF~KIGl~~-vdp~~At~IRtiVi~~~l~~v~~~~g~~~~~~~~~~k~~lflilSGla~glswl   82 (140)
T COG2510           4 AIIYALLSALFAGLTPIFAKIGLEG-VDPDFATTIRTIVILIFLLIVLLVTGNWQAGGEIGPKSWLFLILSGLAGGLSWL   82 (140)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhccc-cCccHHHHHHHHHHHHHHHHHHHhcCceecccccCcceehhhhHHHHHHHHHHH
Confidence            4567788999999999999999975 999999999999999988887765433221 23567889999999988899999


Q ss_pred             HHHHhhcccChhhHHHhhhhhHHHHHHHHHHHHhhccccccccccchhhhhhheeccceeee
Q 019995           92 FSFVGIQYSSPTLSTAMLNLIPAFTFVLAIIFRLEKLNWENKSSQAKSLGTFASIGGAFVVT  153 (332)
Q Consensus        92 ~~~~gl~~t~a~~asii~~~~Pv~~~ila~l~~~E~l~~~~~~~~~k~iGi~l~~~Gv~ll~  153 (332)
                      +||.+++.-.++...-+-.++|++++++++++++||++.++      ++|+++-.+|+++++
T Consensus        83 ~Yf~ALk~G~as~VvPldk~svvl~~lls~lfL~E~ls~~~------~iG~~LI~~Gailvs  138 (140)
T COG2510          83 LYFRALKKGKASRVVPLDKTSVVLAVLLSILFLGERLSLPT------WIGIVLIVIGAILVS  138 (140)
T ss_pred             HHHHHHhcCCcceEEEcccccHHHHHHHHHHHhcCCCCHHH------HHHHHHHHhCeeeEe
Confidence            99999999999999999999999999999999999998875      999999999998865

>TIGR00950 2A78 Carboxylate/Amino Acid/Amine Transporter

Probab=99.20  E-value=3.5e-10  Score=103.57  Aligned_cols=132  Identities=13%  Similarity=0.120  Sum_probs=110.0

Q ss_pred             chhhHHHHHHHHHHHHHHHHHHHHHHHhCCCCh--HHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHHH
Q 019995            9 RAALPSVGMVIVLLAQVSNMEVIKAAMSKGINK--YVIIVYSDALSSLFFLFCSFLFHRSERPQLTFSILCSFFLLSVFG   86 (332)
Q Consensus         9 ~~~~~~l~li~~~~iwg~~~v~~K~~~~~~~~p--~~~~~~R~~~a~l~ll~~~~~~~~~~~~~~~~~~~~~~~~~gl~g   86 (332)
                      ...++....+++++.|+...+..|...++ .+|  .....+|+.++.+++.++....++  ....+.+++......|+++
T Consensus       125 ~~~~G~~~~l~a~~~~a~~~~~~k~~~~~-~~~~~~~~~~~~~~~~~~~l~~~~~~~~~--~~~~~~~~~~~~~~~~~~~  201 (260)
T TIGR00950       125 INPAGLLLGLGSGISFALGTVLYKRLVKK-EGPELLQFTGWVLLLGALLLLPFAWFLGP--NPQALSLQWGALLYLGLIG  201 (260)
T ss_pred             ccHHHHHHHHHHHHHHHHHHHHHhHHhhc-CCchHHHHHHHHHHHHHHHHHHHHHhcCC--CCCcchHHHHHHHHHHHHH
Confidence            34568889999999999999999998754 664  455567899999998888655322  2233567777788888888


Q ss_pred             -HHHHHHHHHhhcccChhhHHHhhhhhHHHHHHHHHHHHhhccccccccccchhhhhhheeccc
Q 019995           87 -CSSQIFSFVGIQYSSPTLSTAMLNLIPAFTFVLAIIFRLEKLNWENKSSQAKSLGTFASIGGA  149 (332)
Q Consensus        87 -~~~~~~~~~gl~~t~a~~asii~~~~Pv~~~ila~l~~~E~l~~~~~~~~~k~iGi~l~~~Gv  149 (332)
                       ...+.++++++++.+++.++.+.++.|+++.++++++++|+++.+      +++|..+.+.|+
T Consensus       202 ~~~~~~~~~~a~~~~~~~~~s~~~~~~pv~~~ll~~~~~~E~~~~~------~~~G~~li~~g~  259 (260)
T TIGR00950       202 TALAYFLWNKGLTLVDPSAASILALAEPLVALLLGLLILGETLSLP------QLIGGALIIAAV  259 (260)
T ss_pred             HHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHHHhCCCCCHH------HHHHHHHHHHhc
Confidence             789999999999999999999999999999999999999999876      499999998886

>PF13536 EmrE: Multidrug resistance efflux transporter

Probab=99.09  E-value=1.1e-10  Score=94.07  Aligned_cols=102  Identities=22%  Similarity=0.325  Sum_probs=83.0

Q ss_pred             HHHHHHHHHHHHHHHHHHhhcCC--CCCCCHHHHHHHHHHHHHH-HHHHHHHHHhhcccChhhHHHhhhhhHHHHHHHHH
Q 019995           45 IVYSDALSSLFFLFCSFLFHRSE--RPQLTFSILCSFFLLSVFG-CSSQIFSFVGIQYSSPTLSTAMLNLIPAFTFVLAI  121 (332)
Q Consensus        45 ~~~R~~~a~l~ll~~~~~~~~~~--~~~~~~~~~~~~~~~gl~g-~~~~~~~~~gl~~t~a~~asii~~~~Pv~~~ila~  121 (332)
                      +.+|+..+.+++......+++.+  .+..+.+++......|+++ ..++.++++|+++++ +.++.+.+++|+++.++++
T Consensus         1 aa~r~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~a~~~~~-~~v~~i~~~~pi~~~ll~~   79 (113)
T PF13536_consen    1 AAFRYLFSVLFLLIILLIRGRLRDLFRALRRKPWLWLILAGLLGFGVAYLLFFYALSYAP-ALVAAIFSLSPIFTALLSW   79 (113)
T ss_pred             CHHHHHHHHHHHHHHHHHHccHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHHhCc-HHHHHHHHHHHHHHHHHHH
Confidence            36899999999888766632211  1233345566777788888 699999999999999 5888999999999999999


Q ss_pred             HHHhhccccccccccchhhhhhheeccceeee
Q 019995          122 IFRLEKLNWENKSSQAKSLGTFASIGGAFVVT  153 (332)
Q Consensus       122 l~~~E~l~~~~~~~~~k~iGi~l~~~Gv~ll~  153 (332)
                      +++|||+++++      ++|++++++|++++.
T Consensus        80 ~~~~er~~~~~------~~a~~l~~~Gv~li~  105 (113)
T PF13536_consen   80 LFFKERLSPRR------WLAILLILIGVILIA  105 (113)
T ss_pred             HHhcCCCCHHH------HHHHHHHHHHHHHHh
Confidence            99999998764      999999999999876

>PF04142 Nuc_sug_transp: Nucleotide-sugar transporter; InterPro: IPR007271 This family of membrane proteins transport nucleotide sugars from the cytoplasm into golgi vesicles

Probab=98.98  E-value=1.2e-07  Score=86.70  Aligned_cols=214  Identities=14%  Similarity=0.145  Sum_probs=140.8

Q ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHhhcccChhhHHHhhhhhHHHHHHHHHHHHhhccccccccccchhhhhhheecccee
Q 019995           72 TFSILCSFFLLSVFGCSSQIFSFVGIQYSSPTLSTAMLNLIPAFTFVLAIIFRLEKLNWENKSSQAKSLGTFASIGGAFV  151 (332)
Q Consensus        72 ~~~~~~~~~~~gl~g~~~~~~~~~gl~~t~a~~asii~~~~Pv~~~ila~l~~~E~l~~~~~~~~~k~iGi~l~~~Gv~l  151 (332)
                      ++|+..+..+-+++....+.+.+.++++.+|+.-.++.++-.++|++++.+++|+|++++|      |+++.+-++|+.+
T Consensus        13 ~~~~~~~~~vPA~lY~~qn~L~~~al~~ld~~t~qvl~q~kIl~TAl~s~~~L~r~ls~~q------W~aL~lL~~Gv~l   86 (244)
T PF04142_consen   13 SPKDTLKLAVPALLYAIQNNLQFVALSYLDPSTFQVLSQSKILFTALFSVLLLKRRLSRRQ------WLALFLLVAGVVL   86 (244)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHhhHHHHHHHHHHHHHHcccchhh------HHHHHHHHHHHhe
Confidence            3566777788888889999999999999999999999999999999999999999998765      8999999999988


Q ss_pred             eeecCCCCCcCCCCCCCCCCcc--cCCCCccchhHHHHHHHHHHHHHHHHHHHHHHHHhcchhHH-HHHHHHHHHHHHHH
Q 019995          152 VTFYKGPPLIGELSHSGSPRRL--LLSPQLSWILGGFFLAAEAFMNSAWFILQALILRKFAAVLI-IMFYLFFFNTILST  228 (332)
Q Consensus       152 l~~~~g~~~~~~~~~~~~~~~~--~~~~~~~~~~G~~l~L~aa~~~A~~~vl~~~~~~~~~~~~~-~~~~~~~~g~i~l~  228 (332)
                      +.......-+      +.+.++  ....+.+...|.++.+.++++-++..++.+|.+|+.+.++. -+.+....|.+..+
T Consensus        87 v~~~~~~~~~------~~~~~~~~~~~~~~~~~~G~~~vl~~~~~S~~agVy~E~~lK~~~~s~~~~N~qL~~~gi~~~~  160 (244)
T PF04142_consen   87 VQLSSSQSSD------NSSSSSVHHDASNQNPLLGLLAVLAAAFLSGFAGVYFEKLLKRSNVSLWIQNMQLYLFGILFNL  160 (244)
T ss_pred             eecCCccccc------cccccccccccccchhHhHHHHHHHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHH
Confidence            7533211100      000000  00112345789999999999999999999999888643333 34444555665555


Q ss_pred             HHHHHHcCC-C--CCccccch-hhHHHHHHHhhHHHHHHHHHHhccc-h--hhhhhchHHHHHHHHHHHHhCCccccc
Q 019995          229 AFALIVVSE-P--SDWKLGLD-IGLVAVLYSVSSYWHWVSSWLVHMV-P--VENWTSLCINVQALGHCLLYCHGCRHC  299 (332)
Q Consensus       229 ~~~~~~~~~-~--~~~~~~~~-~~~~~l~~~gt~i~~~l~~~~l~~~-~--~s~~~~l~Pv~a~il~~~~LgE~~~~~  299 (332)
                      +.....+.+ .  ..+-.+++ ..|..+..  .+++=.+-...+|+. .  =..-..+.-+++.+.++.++|++++..
T Consensus       161 ~~~~~~~~~~~~~~g~f~G~~~~~~~~i~~--~a~gGllva~v~KyadnI~K~fa~a~siv~t~~~s~~lf~~~~s~~  236 (244)
T PF04142_consen  161 LALLLSDGSAISESGFFHGYSWWVWIVIFL--QAIGGLLVAFVLKYADNIVKGFATAVSIVLTAVLSVLLFGFPPSLS  236 (244)
T ss_pred             HHHhcccccccccCCchhhcchHHHHHHHH--HHHhhHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhCCCCchH
Confidence            543332221 1  11101111 22322222  333444455566666 3  122223455788999999999998864

P78382 from SWISSPROT transports CMP-sialic acid, P78381 from SWISSPROT transports UDP-galactose and Q9Y2D2 from SWISSPROT transports UDP-GlcNAc. This family has some but not complete overlap with the UDP-galactose transporter family IPR004689 from INTERPRO.; GO: 0005351 sugar:hydrogen symporter activity, 0008643 carbohydrate transport, 0000139 Golgi membrane, 0016021 integral to membrane

>KOG1441 consensus Glucose-6-phosphate/phosphate and phosphoenolpyruvate/phosphate antiporter [Carbohydrate transport and metabolism; Amino acid transport and metabolism]

Probab=98.97  E-value=8.4e-09  Score=97.05  Aligned_cols=258  Identities=12%  Similarity=0.090  Sum_probs=179.8

Q ss_pred             HHHHHHHh--CCCChHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHhhcccChhhHH
Q 019995           29 EVIKAAMS--KGINKYVIIVYSDALSSLFFLFCSFLFHRSERPQLTFSILCSFFLLSVFGCSSQIFSFVGIQYSSPTLST  106 (332)
Q Consensus        29 v~~K~~~~--~~~~p~~~~~~R~~~a~l~ll~~~~~~~~~~~~~~~~~~~~~~~~~gl~g~~~~~~~~~gl~~t~a~~as  106 (332)
                      ...|..++  +---|..++..++..+.+.++....+...+..+..++..+..++.+|++.++...+-..+++|.+.+...
T Consensus        34 ~~nK~il~~~~f~~p~~lt~~~~~~~~l~~~v~~~l~~~~~~~~~~~~~~~~llpl~~~~~~~~v~~n~Sl~~v~VsF~q  113 (316)
T KOG1441|consen   34 ILNKYILSKYGFPFPITLTMLHLFCGALALLVIKVLKLVPPSKISSKLPLRTLLPLGLVFCISHVLGNVSLSYVPVSFYQ  113 (316)
T ss_pred             EeeHhhhccCCCCCccHHHHHHHHHHHHHHHHHHHhcCCCCCccccccchHHHHHHHHHHHHHHHhcchhhhccchhHHH
Confidence            34688887  4346788888888877777665543322222222233566778899999999999999999999999999


Q ss_pred             HhhhhhHHHHHHHHHHHHhhccccccccccchhhhhhheeccceeeeecCCCCCcCCCCCCCCCCcccCCCCccchhHHH
Q 019995          107 AMLNLIPAFTFVLAIIFRLEKLNWENKSSQAKSLGTFASIGGAFVVTFYKGPPLIGELSHSGSPRRLLLSPQLSWILGGF  186 (332)
Q Consensus       107 ii~~~~Pv~~~ila~l~~~E~l~~~~~~~~~k~iGi~l~~~Gv~ll~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~G~~  186 (332)
                      .+=+++|+++++++.++.+|+.+++.      +..++....|+.+.+.+   +                 ... +..|.+
T Consensus       114 ~iKa~~P~~tvl~~~~~~~~~~s~~~------~lsL~piv~GV~ias~~---e-----------------~~f-n~~G~i  166 (316)
T KOG1441|consen  114 TIKALMPPFTVLLSVLLLGKTYSSMT------YLSLLPIVFGVAIASVT---E-----------------LSF-NLFGFI  166 (316)
T ss_pred             HHHhhcchhHHHHHHHHhCCCCcceE------EEEEEEeeeeEEEeeec---c-----------------ccc-cHHHHH
Confidence            99999999999999999999987664      67788888999876521   1                 112 257999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHH--hcc-hhHHHHHHHHHHHHHHHH-HHHHHHcCCCC------CccccchhhHHHHHHHh
Q 019995          187 FLAAEAFMNSAWFILQALILR--KFA-AVLIIMFYLFFFNTILST-AFALIVVSEPS------DWKLGLDIGLVAVLYSV  256 (332)
Q Consensus       187 l~L~aa~~~A~~~vl~~~~~~--~~~-~~~~~~~~~~~~g~i~l~-~~~~~~~~~~~------~~~~~~~~~~~~l~~~g  256 (332)
                      .++++.++.+...+++++..+  +.+ ++.....++.-++.+.++ |.....|++..      .|+.    .....++..
T Consensus       167 ~a~~s~~~~al~~I~~~~ll~~~~~~~~~~~ll~y~ap~s~~~Ll~P~~~~~~~~~~~~~~~~~~~~----~~~~~~~~s  242 (316)
T KOG1441|consen  167 SAMISNLAFALRNILSKKLLTSKGESLNSMNLLYYTAPISLIFLLIPFLDYVEGNKFVGFLTAPWFV----TFLILLLNS  242 (316)
T ss_pred             HHHHHHHHHHHHHHHHHHhhhccccccCchHHHHHhhhHHHHHHhcchHhhhcccceeeeeccccch----hhHHHHHHH
Confidence            999999999999999999874  221 578888888888888888 76655444221      2322    122222222


Q ss_pred             --hHHHHHHHHHHhccc-h--hhhhhchHHHHHHHHHHHHhCCccccchhh---hhhheeeeeeeccCC
Q 019995          257 --SSYWHWVSSWLVHMV-P--VENWTSLCINVQALGHCLLYCHGCRHCRRR---FLSWKVLLINFFSND  317 (332)
Q Consensus       257 --t~i~~~l~~~~l~~~-~--~s~~~~l~Pv~a~il~~~~LgE~~~~~~~~---~~~~~~~~~~~~~~~  317 (332)
                        ...-....++.+.+. |  -++.+.+--.+.+..|+++++|+.++.+-.   .-+-||.+=|=.|++
T Consensus       243 v~~f~~Nls~f~~ig~tSalT~~V~g~~K~~~vi~~s~~iF~~pvt~~n~~G~~iai~Gv~~Y~~~k~~  311 (316)
T KOG1441|consen  243 VLAFLLNLSAFLVIGRTSALTYSVAGHMKRIVVIVVSWLIFGNPVTFLNALGYAIAILGVFLYSRAKLK  311 (316)
T ss_pred             HHHHHHHHHHHHHHcccCchhhhhhccceEEEEEEeEeeeecCCCchhhHHHHHHHHHHHHHHHHHhhh
Confidence              122224455677777 6  556666666778888999999977765443   345566654444443

>PRK10532 threonine and homoserine efflux system; Provisional

Probab=98.86  E-value=3.6e-08  Score=92.45  Aligned_cols=133  Identities=14%  Similarity=0.067  Sum_probs=106.4

Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHHH-HHH
Q 019995           11 ALPSVGMVIVLLAQVSNMEVIKAAMSKGINKYVIIVYSDALSSLFFLFCSFLFHRSERPQLTFSILCSFFLLSVFG-CSS   89 (332)
Q Consensus        11 ~~~~l~li~~~~iwg~~~v~~K~~~~~~~~p~~~~~~R~~~a~l~ll~~~~~~~~~~~~~~~~~~~~~~~~~gl~g-~~~   89 (332)
                      ..+.+..+.+++.|+...+..|...+ +.+|..... -..++++.+.++......  ....+...+...+.+|+++ .+.
T Consensus       147 ~~G~ll~l~aa~~~a~~~v~~r~~~~-~~~~~~~~~-~~~~~~~~l~~~~~~~~~--~~~~~~~~~~~~l~lgv~~t~~~  222 (293)
T PRK10532        147 LTGAALALGAGACWAIYILSGQRAGA-EHGPATVAI-GSLIAALIFVPIGALQAG--EALWHWSILPLGLAVAILSTALP  222 (293)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHhc-cCCchHHHH-HHHHHHHHHHHHHHHccC--cccCCHHHHHHHHHHHHHHHHHH
Confidence            45788899999999999999998755 478877654 446666777776654322  1223445555567888988 888


Q ss_pred             HHHHHHhhcccChhhHHHhhhhhHHHHHHHHHHHHhhccccccccccchhhhhhheeccceeee
Q 019995           90 QIFSFVGIQYSSPTLSTAMLNLIPAFTFVLAIIFRLEKLNWENKSSQAKSLGTFASIGGAFVVT  153 (332)
Q Consensus        90 ~~~~~~gl~~t~a~~asii~~~~Pv~~~ila~l~~~E~l~~~~~~~~~k~iGi~l~~~Gv~ll~  153 (332)
                      +.++++++++.+++.++.+.++.|+++.++++++++|+++..      +++|.++.++|++...
T Consensus       223 ~~l~~~~~~~~~a~~as~~~~l~Pv~a~l~~~l~lgE~~~~~------~~iG~~lIl~~~~~~~  280 (293)
T PRK10532        223 YSLEMIALTRLPTRTFGTLMSMEPALAAVSGMIFLGETLTLI------QWLALGAIIAASMGST  280 (293)
T ss_pred             HHHHHHHHHhcChhHHHHHHHhHHHHHHHHHHHHhCCCCcHH------HHHHHHHHHHHHHHHH
Confidence            999999999999999999999999999999999999999876      4999999999987754

>PF00892 EamA: EamA-like transporter family; InterPro: IPR000620 This domain is found in proteins including the Erwinia chrysanthemi PecM protein, which is involved in pectinase, cellulase and blue pigment regulation; and the Salmonella typhimurium PagO protein, the function of which is unknown

Probab=98.83  E-value=9.9e-09  Score=82.64  Aligned_cols=105  Identities=15%  Similarity=0.161  Sum_probs=82.0

Q ss_pred             HHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHHHHcCCC-CCccccchhhHHHHHHHh---hHHHHHHHHHHh
Q 019995          193 FMNSAWFILQALILRKFAAVLIIMFYLFFFNTILSTAFALIVVSEP-SDWKLGLDIGLVAVLYSV---SSYWHWVSSWLV  268 (332)
Q Consensus       193 ~~~A~~~vl~~~~~~~~~~~~~~~~~~~~~g~i~l~~~~~~~~~~~-~~~~~~~~~~~~~l~~~g---t~i~~~l~~~~l  268 (332)
                      ++||.+.+..|+..++. |+...+.+++..+++ +++.....+... ..++   ...+..+++.|   +++++.++++++
T Consensus         1 ~~~a~~~~~~k~~~~~~-~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~a~   75 (126)
T PF00892_consen    1 FSWAIYSVFSKKLLKKI-SPLSITFWRFLIAGI-LLILLLILGRKPFKNLS---PRQWLWLLFLGLLGTALAYLLYFYAL   75 (126)
T ss_pred             ceeeeHHHHHHHHhccC-CHHHHHHHHHHHHHH-HHHHHHhhccccccCCC---hhhhhhhhHhhccceehHHHHHHHHH
Confidence            47899999999999887 489999999999998 666655544322 2222   12344444455   789999999999


Q ss_pred             ccc-h--hhhhhchHHHHHHHHHHHHhCCccccchhh
Q 019995          269 HMV-P--VENWTSLCINVQALGHCLLYCHGCRHCRRR  302 (332)
Q Consensus       269 ~~~-~--~s~~~~l~Pv~a~il~~~~LgE~~~~~~~~  302 (332)
                      ++. +  ++.+.+++|+++.+++++++||+++..+-.
T Consensus        76 ~~~~~~~~~~~~~~~pv~~~i~~~~~~~e~~~~~~~~  112 (126)
T PF00892_consen   76 KYISASIVSILQYLSPVFAAILGWLFLGERPSWRQII  112 (126)
T ss_pred             HhcchhHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHH
Confidence            999 5  999999999999999999999999875544

Many members of this family are classed as drug/metabolite transporters and have no known function. They are predicted to be integral membrane proteins and many of the proteins contain two copies of this domain [].; GO: 0016020 membrane

>PRK11272 putative DMT superfamily transporter inner membrane protein; Provisional

Probab=98.80  E-value=5.2e-08  Score=91.32  Aligned_cols=135  Identities=15%  Similarity=0.022  Sum_probs=109.9

Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHHH-HHH
Q 019995           11 ALPSVGMVIVLLAQVSNMEVIKAAMSKGINKYVIIVYSDALSSLFFLFCSFLFHRSERPQLTFSILCSFFLLSVFG-CSS   89 (332)
Q Consensus        11 ~~~~l~li~~~~iwg~~~v~~K~~~~~~~~p~~~~~~R~~~a~l~ll~~~~~~~~~~~~~~~~~~~~~~~~~gl~g-~~~   89 (332)
                      ..+.+..+.+++.|+...+..|... . -++....++++.++++.+.++............+.++|......|+++ .+.
T Consensus       149 ~~G~l~~l~a~~~~a~~~~~~~~~~-~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~i~~s~~~  226 (292)
T PRK11272        149 PWGAILILIASASWAFGSVWSSRLP-L-PVGMMAGAAEMLAAGVVLLIASLLSGERLTALPTLSGFLALGYLAVFGSIIA  226 (292)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHhcC-C-CcchHHHHHHHHHHHHHHHHHHHHcCCcccccCCHHHHHHHHHHHHHHHHHH
Confidence            4578888899999999999999853 3 345667788999998888877654322111122456788888889988 899


Q ss_pred             HHHHHHhhcccChhhHHHhhhhhHHHHHHHHHHHHhhccccccccccchhhhhhheeccceeee
Q 019995           90 QIFSFVGIQYSSPTLSTAMLNLIPAFTFVLAIIFRLEKLNWENKSSQAKSLGTFASIGGAFVVT  153 (332)
Q Consensus        90 ~~~~~~gl~~t~a~~asii~~~~Pv~~~ila~l~~~E~l~~~~~~~~~k~iGi~l~~~Gv~ll~  153 (332)
                      +.++++++++.++++++.+.++.|++++++++++++|+++..      +++|.++.+.|+.+..
T Consensus       227 ~~l~~~~~~~~~~~~~s~~~~l~Pi~a~i~~~~~l~E~~t~~------~iiG~~lIi~gv~~~~  284 (292)
T PRK11272        227 ISAYMYLLRNVRPALATSYAYVNPVVAVLLGTGLGGETLSPI------EWLALGVIVFAVVLVT  284 (292)
T ss_pred             HHHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHcCCCCcHH------HHHHHHHHHHHHHHHH
Confidence            999999999999999999999999999999999999999876      4999999999997754

>COG2510 Predicted membrane protein [Function unknown]

Probab=98.73  E-value=1.5e-07  Score=76.17  Aligned_cols=124  Identities=8%  Similarity=-0.108  Sum_probs=96.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHHHHcCCCCCccccchhhHHHHHHHh--hHHHHH
Q 019995          185 GFFLAAEAFMNSAWFILQALILRKFAAVLIIMFYLFFFNTILSTAFALIVVSEPSDWKLGLDIGLVAVLYSV--SSYWHW  262 (332)
Q Consensus       185 ~~l~L~aa~~~A~~~vl~~~~~~~~~~~~~~~~~~~~~g~i~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~g--t~i~~~  262 (332)
                      ..+++++|+.+++-.++.|-..|+. ||...+....++..+.+........+. ........-.|..++..|  ++++..
T Consensus         5 ~~~ALLsA~fa~L~~iF~KIGl~~v-dp~~At~IRtiVi~~~l~~v~~~~g~~-~~~~~~~~k~~lflilSGla~glswl   82 (140)
T COG2510           5 IIYALLSALFAGLTPIFAKIGLEGV-DPDFATTIRTIVILIFLLIVLLVTGNW-QAGGEIGPKSWLFLILSGLAGGLSWL   82 (140)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhcccc-CccHHHHHHHHHHHHHHHHHHHhcCce-ecccccCcceehhhhHHHHHHHHHHH
Confidence            5688999999999999988778887 588888888888888887776554331 111011223566666777  999999


Q ss_pred             HHHHHhccc--h-hhhhhchHHHHHHHHHHHHhCCccccchhh---hhhheeee
Q 019995          263 VSSWLVHMV--P-VENWTSLCINVQALGHCLLYCHGCRHCRRR---FLSWKVLL  310 (332)
Q Consensus       263 l~~~~l~~~--~-~s~~~~l~Pv~a~il~~~~LgE~~~~~~~~---~~~~~~~~  310 (332)
                      +|+++++.-  | +++..-..|++++++|+++|||+++.++-+   .+.-|+++
T Consensus        83 ~Yf~ALk~G~as~VvPldk~svvl~~lls~lfL~E~ls~~~~iG~~LI~~Gail  136 (140)
T COG2510          83 LYFRALKKGKASRVVPLDKTSVVLAVLLSILFLGERLSLPTWIGIVLIVIGAIL  136 (140)
T ss_pred             HHHHHHhcCCcceEEEcccccHHHHHHHHHHHhcCCCCHHHHHHHHHHHhCeee
Confidence            999999998  4 999999999999999999999999986655   45555554

>PRK11689 aromatic amino acid exporter; Provisional

Probab=98.70  E-value=2e-07  Score=87.54  Aligned_cols=132  Identities=16%  Similarity=0.106  Sum_probs=100.2

Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHHHHHHH
Q 019995           11 ALPSVGMVIVLLAQVSNMEVIKAAMSKGINKYVIIVYSDALSSLFFLFCSFLFHRSERPQLTFSILCSFFLLSVFGCSSQ   90 (332)
Q Consensus        11 ~~~~l~li~~~~iwg~~~v~~K~~~~~~~~p~~~~~~R~~~a~l~ll~~~~~~~~~~~~~~~~~~~~~~~~~gl~g~~~~   90 (332)
                      ..+.++.+.++++|+...+..|...+ +.++....   +..+++.+.+.... ........+.+.+......|+...+.+
T Consensus       155 ~~G~~~~l~aa~~~A~~~v~~k~~~~-~~~~~~~~---~~~~~~~l~~~~~~-~~~~~~~~~~~~~~~l~~~~~~t~~~~  229 (295)
T PRK11689        155 PLSYGLAFIGAFIWAAYCNVTRKYAR-GKNGITLF---FILTALALWIKYFL-SPQPAMVFSLPAIIKLLLAAAAMGFGY  229 (295)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHhhccC-CCCchhHH---HHHHHHHHHHHHHH-hcCccccCCHHHHHHHHHHHHHHHHHH
Confidence            34778899999999999999998644 47776543   23344444443332 221112345566777666664337899


Q ss_pred             HHHHHhhcccChhhHHHhhhhhHHHHHHHHHHHHhhccccccccccchhhhhhheeccceeee
Q 019995           91 IFSFVGIQYSSPTLSTAMLNLIPAFTFVLAIIFRLEKLNWENKSSQAKSLGTFASIGGAFVVT  153 (332)
Q Consensus        91 ~~~~~gl~~t~a~~asii~~~~Pv~~~ila~l~~~E~l~~~~~~~~~k~iGi~l~~~Gv~ll~  153 (332)
                      .++++++++.+++.++.+.++.|++..++++++++|+++..+      ++|.++.+.|+.+..
T Consensus       230 ~l~~~al~~~~a~~~s~~~~l~Pv~a~i~~~~~lgE~~~~~~------~iG~~lI~~gv~~~~  286 (295)
T PRK11689        230 AAWNVGILHGNMTLLATASYFTPVLSAALAALLLSTPLSFSF------WQGVAMVTAGSLLCW  286 (295)
T ss_pred             HHHHHHHHccCHHHHHHHHHhHHHHHHHHHHHHhCCCCcHHH------HHHHHHHHHhHHHHh
Confidence            999999999999999999999999999999999999998764      999999999987653

>PLN00411 nodulin MtN21 family protein; Provisional

Probab=98.65  E-value=3.2e-07  Score=88.51  Aligned_cols=135  Identities=10%  Similarity=0.114  Sum_probs=100.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhCCCCh-HHHHHHHHHHHHHHHHHHHHHhhcCCC----CCCCHHHHHHHHHHHHHHH
Q 019995           13 PSVGMVIVLLAQVSNMEVIKAAMSKGINK-YVIIVYSDALSSLFFLFCSFLFHRSER----PQLTFSILCSFFLLSVFGC   87 (332)
Q Consensus        13 ~~l~li~~~~iwg~~~v~~K~~~~~~~~p-~~~~~~R~~~a~l~ll~~~~~~~~~~~----~~~~~~~~~~~~~~gl~g~   87 (332)
                      +.+.++.+++.|+...++.|...+. .|+ ...+++...++++.+.+.....++...    ...... ...++..|+...
T Consensus       190 G~~l~l~aa~~wa~~~il~~~~~~~-~~~~~~~t~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~-~~~i~y~~i~t~  267 (358)
T PLN00411        190 GGALLTIQGIFVSVSFILQAHIMSE-YPAAFTVSFLYTVCVSIVTSMIGLVVEKNNPSVWIIHFDIT-LITIVTMAIITS  267 (358)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHH-cCcHhHHHHHHHHHHHHHHHHHHHHHccCCcccceeccchH-HHHHHHHHHHHH
Confidence            5567788999999999999987665 644 466777777777766555544332111    111222 222333444336


Q ss_pred             HHHHHHHHhhcccChhhHHHhhhhhHHHHHHHHHHHHhhccccccccccchhhhhhheeccceeeeec
Q 019995           88 SSQIFSFVGIQYSSPTLSTAMLNLIPAFTFVLAIIFRLEKLNWENKSSQAKSLGTFASIGGAFVVTFY  155 (332)
Q Consensus        88 ~~~~~~~~gl~~t~a~~asii~~~~Pv~~~ila~l~~~E~l~~~~~~~~~k~iGi~l~~~Gv~ll~~~  155 (332)
                      +.+.++++++++.+|+.+++..++.|++++++++++++|+++..+      ++|.++.+.|+.+....
T Consensus       268 lay~lw~~~v~~~ga~~as~~~~L~PV~a~llg~l~LgE~lt~~~------~iG~~LIl~Gv~l~~~~  329 (358)
T PLN00411        268 VYYVIHSWTVRHKGPLYLAIFKPLSILIAVVMGAIFLNDSLYLGC------LIGGILITLGFYAVMWG  329 (358)
T ss_pred             HHHHHHHHHHhccCchHHHHHHhHHHHHHHHHHHHHhCCCCcHHH------HHHHHHHHHHHHHHHhh
Confidence            688899999999999999999999999999999999999998764      99999999999887543

>KOG2234 consensus Predicted UDP-galactose transporter [Carbohydrate transport and metabolism]

Probab=98.64  E-value=3.2e-05  Score=73.00  Aligned_cols=268  Identities=13%  Similarity=0.120  Sum_probs=173.6

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHhCC---CChHHHHHHHHHHHHHHHHHHHHHhhcC--C--CCCC------CHHHHHH
Q 019995           12 LPSVGMVIVLLAQVSNMEVIKAAMSKG---INKYVIIVYSDALSSLFFLFCSFLFHRS--E--RPQL------TFSILCS   78 (332)
Q Consensus        12 ~~~l~li~~~~iwg~~~v~~K~~~~~~---~~p~~~~~~R~~~a~l~ll~~~~~~~~~--~--~~~~------~~~~~~~   78 (332)
                      .-++.++...+.+++..+..|..-..+   +.|.+.+++--.+-.++.....+...|+  +  .+..      .+++..+
T Consensus        15 ~k~~~l~~~t~~~~~l~l~l~ys~~~~~~~f~~tt~v~~~Ei~Kl~~c~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~lk   94 (345)
T KOG2234|consen   15 MKYLSLIVLTAQNTALTLLLRYSRTREKPMFLPTTAVFLTEVIKLVFCLFLLLFEERKYAKKSLKSLSKEILAAPRETLK   94 (345)
T ss_pred             HHHHHHHHHHHHHhhHHHHHHHHhcCCCCCcchhHHHHHHHHHHHHHHHHHHHHHhhHHhhhhhhhcCHHHHhChHHHHH
Confidence            456777888888999999999876555   6777888777777766666555544222  1  1111      2334556


Q ss_pred             HHHHHHHHHHHHHHHHHhhcccChhhHHHhhhhhHHHHHHHHHHHHhhccccccccccchhhhhhheeccceeeeecCCC
Q 019995           79 FFLLSVFGCSSQIFSFVGIQYSSPTLSTAMLNLIPAFTFVLAIIFRLEKLNWENKSSQAKSLGTFASIGGAFVVTFYKGP  158 (332)
Q Consensus        79 ~~~~gl~g~~~~~~~~~gl~~t~a~~asii~~~~Pv~~~ila~l~~~E~l~~~~~~~~~k~iGi~l~~~Gv~ll~~~~g~  158 (332)
                      ..+-+++.++++-++|.++.+.+|++-.+..++--+-|+++..+++++|++++|      |..+++.++|+.++-....+
T Consensus        95 ~~vPa~iYalqNnl~yval~~ldaatyqVt~qlKI~tTA~f~vl~L~rkLs~~Q------w~Al~lL~~Gv~~vQ~~~~~  168 (345)
T KOG2234|consen   95 VSVPALIYALQNNLQYVALSNLDAATYQVTYQLKILTTAIFSVLILRRKLSRLQ------WMALVLLFAGVALVQLPSLS  168 (345)
T ss_pred             HHHHHHHHHHhhhHHHHHHhcCCchhhhhhhhHHHHHHHHHHHHHHhhhhhHHH------HHHHHHHHHHHHHHhccCCC
Confidence            667777777888899999999999999999999999999999999999998775      88899999999886522111


Q ss_pred             CCcCCCCCCCCCCccc-CCCCccchhHHHHHHHHHHHHHHHHHHHHHHHHhcchhHH-HHHHHHHHHHHHHHHHHHHHcC
Q 019995          159 PLIGELSHSGSPRRLL-LSPQLSWILGGFFLAAEAFMNSAWFILQALILRKFAAVLI-IMFYLFFFNTILSTAFALIVVS  236 (332)
Q Consensus       159 ~~~~~~~~~~~~~~~~-~~~~~~~~~G~~l~L~aa~~~A~~~vl~~~~~~~~~~~~~-~~~~~~~~g~i~l~~~~~~~~~  236 (332)
                      .           .++. ...+.+...|....+.++++-+...++..|.+|+-+.+.. -+.-..++|.++.+...+....
T Consensus       169 ~-----------~~a~~~~~~~n~~~G~~avl~~c~~SgfAgvYfEkiLK~s~~s~wi~NiqL~~~g~~f~~l~~~~~d~  237 (345)
T KOG2234|consen  169 P-----------TGAKSESSAQNPFLGLVAVLVACFLSGFAGVYFEKILKGSNVSLWIRNIQLYFFGILFNLLTILLQDG  237 (345)
T ss_pred             C-----------CCccCCCcccchhhhHHHHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHHHhhccc
Confidence            0           0001 1234455789999999999999999999999877542333 3333445666655544333222


Q ss_pred             CCCCcc---ccch-hhHHHHHHHhhHHHHHHHHHHhccch--h-hhhhchHHHHHHHHHHHHhCCcccc
Q 019995          237 EPSDWK---LGLD-IGLVAVLYSVSSYWHWVSSWLVHMVP--V-ENWTSLCINVQALGHCLLYCHGCRH  298 (332)
Q Consensus       237 ~~~~~~---~~~~-~~~~~l~~~gt~i~~~l~~~~l~~~~--~-s~~~~l~Pv~a~il~~~~LgE~~~~  298 (332)
                      +...|.   .++. ..|..++-.+  ++=.+-...+|+.+  . .--..+..+++.+.++.++|..++.
T Consensus       238 ~~i~~~gff~G~s~~vw~vVl~~a--~gGLlvs~v~KyADnIlK~f~~s~aiilt~v~S~~Lf~~~~t~  304 (345)
T KOG2234|consen  238 EAINEYGFFYGYSSIVWLVVLLNA--VGGLLVSLVMKYADNILKGFSTSVAIILTTVASIALFDFQLTL  304 (345)
T ss_pred             cccccCCccccccHHHHHHHHHHh--ccchhHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHccCCchH
Confidence            111121   1111 2343333333  22223334444442  1 1111234577888888888888885

>TIGR03340 phn_DUF6 phosphonate utilization associated putative membrane protein

Probab=98.57  E-value=1.8e-07  Score=87.13  Aligned_cols=133  Identities=15%  Similarity=0.037  Sum_probs=90.8

Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHhCCCChH----HHHHHHHHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHHH
Q 019995           11 ALPSVGMVIVLLAQVSNMEVIKAAMSKGINKY----VIIVYSDALSSLFFLFCSFLFHRSERPQLTFSILCSFFLLSVFG   86 (332)
Q Consensus        11 ~~~~l~li~~~~iwg~~~v~~K~~~~~~~~p~----~~~~~R~~~a~l~ll~~~~~~~~~~~~~~~~~~~~~~~~~gl~g   86 (332)
                      .++....+.+++.|+...+..|...+ +.+|.    ....+.+...++.+.+.....+++ ....+...+......+.+.
T Consensus       143 ~~g~~~~l~aal~~a~~~i~~k~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~  220 (281)
T TIGR03340       143 RKAYAWALAAALGTAIYSLSDKAAAL-GVPAFYSALGYLGIGFLAMGWPFLLLYLKRHGR-SMFPYARQILPSATLGGLM  220 (281)
T ss_pred             hhHHHHHHHHHHHHHHhhhhcccccc-chhcccccHHHHHHHHHHHHHHHHHHHHHHhcc-chhhhHHHHHHHHHHHHHH
Confidence            45666778889999999999987532 24442    233333333322222222111111 1111222334445666666


Q ss_pred             -HHHHHHHHHhhcccChhhHHHhhhhhHHHHHHHHHHHHhhccccccccccchhhhhhheecccee
Q 019995           87 -CSSQIFSFVGIQYSSPTLSTAMLNLIPAFTFVLAIIFRLEKLNWENKSSQAKSLGTFASIGGAFV  151 (332)
Q Consensus        87 -~~~~~~~~~gl~~t~a~~asii~~~~Pv~~~ila~l~~~E~l~~~~~~~~~k~iGi~l~~~Gv~l  151 (332)
                       ...+.++++++++.+++.++...++.|++..++++++++|+++..      +++|.++.++|+.+
T Consensus       221 s~l~~~l~~~al~~~~a~~~~~~~~l~pv~a~l~g~~~lgE~~~~~------~~iG~~lil~Gv~l  280 (281)
T TIGR03340       221 IGGAYALVLWAMTRLPVATVVALRNTSIVFAVVLGIWFLNERWYLT------RLMGVCIIVAGLVV  280 (281)
T ss_pred             HHHHHHHHHHHHhhCCceEEEeecccHHHHHHHHHHHHhCCCccHH------HHHHHHHHHHhHHh
Confidence             788999999999999999999999999999999999999999876      49999999999864

This family of hydrophobic proteins has some homology to families of integral membrane proteins such as (pfam00892) and may be a permease. It occurs in the vicinity of various types of operons for the catabolism of phosphonates in Vibrio, Pseudomonas, Polaromonas and Thiomicrospira.

>PRK11453 O-acetylserine/cysteine export protein; Provisional

Probab=98.56  E-value=1.4e-06  Score=81.84  Aligned_cols=137  Identities=14%  Similarity=0.131  Sum_probs=101.8

Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHhCCCC--hHHHHHHHHHHHHHHHHHHHHHhhcCC-----CCCCCHHHHHHHHHHH
Q 019995           11 ALPSVGMVIVLLAQVSNMEVIKAAMSKGIN--KYVIIVYSDALSSLFFLFCSFLFHRSE-----RPQLTFSILCSFFLLS   83 (332)
Q Consensus        11 ~~~~l~li~~~~iwg~~~v~~K~~~~~~~~--p~~~~~~R~~~a~l~ll~~~~~~~~~~-----~~~~~~~~~~~~~~~g   83 (332)
                      ..+.++.+.+++.|+...+..|...+..-+  ......+-..++.+.+.......+...     ....+.+.|..++.+|
T Consensus       142 ~~G~~l~l~aal~~a~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~  221 (299)
T PRK11453        142 MLGFMLTLAAAFSWACGNIFNKKIMSHSTRPAVMSLVVWSALIPIIPFFVASLILDGSATMIHSLVTIDMTTILSLMYLA  221 (299)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhcccCccchhHHHHHHHHHHHHHHHHHHHHhcCchhhhhhhccCCHHHHHHHHHHH
Confidence            357788899999999999999986543212  223334444444433333322222211     1134567788888899


Q ss_pred             HHH-HHHHHHHHHhhcccChhhHHHhhhhhHHHHHHHHHHHHhhccccccccccchhhhhhheeccceeee
Q 019995           84 VFG-CSSQIFSFVGIQYSSPTLSTAMLNLIPAFTFVLAIIFRLEKLNWENKSSQAKSLGTFASIGGAFVVT  153 (332)
Q Consensus        84 l~g-~~~~~~~~~gl~~t~a~~asii~~~~Pv~~~ila~l~~~E~l~~~~~~~~~k~iGi~l~~~Gv~ll~  153 (332)
                      +++ .+.+.+++.++++.++++++.+.++.|++..++++++++|+++..+      ++|.++.++|+.+..
T Consensus       222 i~~t~~~~~l~~~~l~~~~a~~~s~~~~l~Pv~a~~~~~l~lgE~~~~~~------~iG~~lI~~gv~l~~  286 (299)
T PRK11453        222 FVATIVGYGIWGTLLGRYETWRVAPLSLLVPVVGLASAALLLDERLTGLQ------FLGAVLIMAGLYINV  286 (299)
T ss_pred             HHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHhCCCccHHH------HHHHHHHHHHHHHHh
Confidence            998 8899999999999999999999999999999999999999998764      999999999997643

>TIGR00817 tpt Tpt phosphate/phosphoenolpyruvate translocator

Probab=98.48  E-value=4.9e-07  Score=85.03  Aligned_cols=137  Identities=17%  Similarity=0.143  Sum_probs=102.6

Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHHHHHHHHHHhhcCCCCC---------CCHHHHHH-H
Q 019995           11 ALPSVGMVIVLLAQVSNMEVIKAAMSK-GINKYVIIVYSDALSSLFFLFCSFLFHRSERPQ---------LTFSILCS-F   79 (332)
Q Consensus        11 ~~~~l~li~~~~iwg~~~v~~K~~~~~-~~~p~~~~~~R~~~a~l~ll~~~~~~~~~~~~~---------~~~~~~~~-~   79 (332)
                      ..+.+..+++++.|+...+..|...++ +.||..+..+...++.+.++|+....+......         ........ .
T Consensus       144 ~~G~~~~l~a~~~~a~~~v~~k~~~~~~~~~~~~~~~~~~~~~~~~l~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  223 (302)
T TIGR00817       144 WAGFLSAMISNITFVSRNIFSKKAMTIKSLDKTNLYAYISIMSLFLLSPPAFITEGPPFLPHGFMQAISGVNVTKIYTVS  223 (302)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhccCCCCcccHHHHHHHHHHHHHHHHHHHHcchHHHHHHHHHhhcccCchHHHHHH
Confidence            457788889999999999999997652 489999999999999999999876543111000         00011111 2


Q ss_pred             HHHHHHH-HHHHHHHHHhhcccChhhHHHhhhhhHHHHHHHHHHHHhhccccccccccchhhhhhheeccceeee
Q 019995           80 FLLSVFG-CSSQIFSFVGIQYSSPTLSTAMLNLIPAFTFVLAIIFRLEKLNWENKSSQAKSLGTFASIGGAFVVT  153 (332)
Q Consensus        80 ~~~gl~g-~~~~~~~~~gl~~t~a~~asii~~~~Pv~~~ila~l~~~E~l~~~~~~~~~k~iGi~l~~~Gv~ll~  153 (332)
                      +..+... ...+.+++.++++++|+.+++..+..|+++.++++++++|+++.++      ++|.++.+.|+.+..
T Consensus       224 ~~~~~~~~~~~~~~~~~~l~~~sa~t~sv~~~l~pv~~~~~~~~~lge~lt~~~------~~G~~lil~Gv~l~~  292 (302)
T TIGR00817       224 LVAAMGFFHFYQQVAFMLLGRVSPLTHSVGNCMKRVVVIVVSILFFGTKISPQQ------VFGTGIAIAGVFLYS  292 (302)
T ss_pred             HHHHHHHHHHHHHHHHHHHccCCchHHHHHhhhhhhheeeeehhhcCCCCchhH------HHHHHHHHHHHHHHH
Confidence            2222222 3344677789999999999999999999999999999999998765      999999999997643

specificities overlap.

>PF06800 Sugar_transport: Sugar transport protein; InterPro: IPR010651 This is a family of bacterial sugar transporters approximately 300 residues long

Probab=98.41  E-value=1.4e-05  Score=73.58  Aligned_cols=213  Identities=11%  Similarity=0.014  Sum_probs=136.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhcccChhhHHHhh-hhhHHHHHHHHHHHHhhccccccccccchhhhhhheeccceee
Q 019995           74 SILCSFFLLSVFGCSSQIFSFVGIQYSSPTLSTAML-NLIPAFTFVLAIIFRLEKLNWENKSSQAKSLGTFASIGGAFVV  152 (332)
Q Consensus        74 ~~~~~~~~~gl~g~~~~~~~~~gl~~t~a~~asii~-~~~Pv~~~ila~l~~~E~l~~~~~~~~~k~iGi~l~~~Gv~ll  152 (332)
                      +.+...++.|++....|...+.+.++.+.+.+-=+. ..+=+.+.+++.++++|.-+.+++  ..-.+++++-++|+.+.
T Consensus        43 ~~~~~~~lsG~~W~iGq~~qf~s~~~~GVS~tmPiStg~QLvg~sl~gv~~fgEW~~~~~~--~~G~~Al~liiiGv~lt  120 (269)
T PF06800_consen   43 TSFIVAFLSGAFWAIGQIGQFKSFKKIGVSKTMPISTGLQLVGTSLIGVLFFGEWTTTTQK--IIGFLALVLIIIGVILT  120 (269)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhcceeeeccchhHHHHHHHHHHHhhcCCCCCcchH--HHHHHHHHHHHHHHHHh
Confidence            777778888888899999999999999888765444 456677888999999998776552  12345677788888775


Q ss_pred             eecCCCCCcCCCCCCCCCCcccCCCCccchhHHHHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHH-HHHH
Q 019995          153 TFYKGPPLIGELSHSGSPRRLLLSPQLSWILGGFFLAAEAFMNSAWFILQALILRKFAAVLIIMFYLFFFNTILS-TAFA  231 (332)
Q Consensus       153 ~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~G~~l~L~aa~~~A~~~vl~~~~~~~~~~~~~~~~~~~~~g~i~l-~~~~  231 (332)
                      +..+.++             ++.+.+.+...|...++++++.|-.|.++.|-  .+. |+..+..-|. +|.... +++.
T Consensus       121 s~~~~~~-------------~~~~~~~~~~kgi~~Ll~stigy~~Y~~~~~~--~~~-~~~~~~lPqa-iGm~i~a~i~~  183 (269)
T PF06800_consen  121 SYQDKKS-------------DKSSSKSNMKKGILALLISTIGYWIYSVIPKA--FHV-SGWSAFLPQA-IGMLIGAFIFN  183 (269)
T ss_pred             ccccccc-------------cccccccchhhHHHHHHHHHHHHHHHHHHHHh--cCC-ChhHhHHHHH-HHHHHHHHHHh
Confidence            5322111             00111234467999999999999999998553  344 4777766665 333332 2333


Q ss_pred             HHHcCCCCCccccchhhHHHHHHHhhHHHHHHHHHHhccc-h--hhhhhchHHHHHHHHHHHHhCCccccchhhhhhhee
Q 019995          232 LIVVSEPSDWKLGLDIGLVAVLYSVSSYWHWVSSWLVHMV-P--VENWTSLCINVQALGHCLLYCHGCRHCRRRFLSWKV  308 (332)
Q Consensus       232 ~~~~~~~~~~~~~~~~~~~~l~~~gt~i~~~l~~~~l~~~-~--~s~~~~l~Pv~a~il~~~~LgE~~~~~~~~~~~~~~  308 (332)
                      .+.+.+.. .+..+......+++   +++...+..+.++. .  .=.++-+.++++.+.|.++|||+=+.-+.+...-|.
T Consensus       184 ~~~~~~~~-~k~~~~nil~G~~w---~ignl~~~is~~~~G~a~af~lSQ~~vvIStlgGI~il~E~Kt~ke~~~~~~G~  259 (269)
T PF06800_consen  184 LFSKKPFF-EKKSWKNILTGLIW---GIGNLFYLISAQKNGVATAFTLSQLGVVISTLGGIFILKEKKTKKEMIYTLIGL  259 (269)
T ss_pred             hccccccc-ccchHHhhHHHHHH---HHHHHHHHHhHHhccchhhhhHHhHHHHHHHhhhheEEEecCchhhHHHHHHHH
Confidence            22222111 11111122223333   35666677777777 4  335555789999999999999987665555444444


Q ss_pred             e
Q 019995          309 L  309 (332)
Q Consensus       309 ~  309 (332)
                      +
T Consensus       260 ~  260 (269)
T PF06800_consen  260 I  260 (269)
T ss_pred             H
Confidence            3

Members include glucose uptake proteins [], ribose transport proteins, and several putative and hypothetical membrane proteins probably involved in sugar transport across bacterial membranes.; GO: 0015144 carbohydrate transmembrane transporter activity, 0034219 carbohydrate transmembrane transport, 0016021 integral to membrane

>KOG1444 consensus Nucleotide-sugar transporter VRG4/SQV-7 [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]

Probab=98.40  E-value=4.8e-05  Score=70.87  Aligned_cols=284  Identities=16%  Similarity=0.082  Sum_probs=174.5

Q ss_pred             CcccccchhhHHHHHHHHHHHHHHHHHHHHHHHhCCCChHHHH--HHHHHHHHHHHHHHHHHhhcC-CCCCCCHHHHHHH
Q 019995            3 VDMGSMRAALPSVGMVIVLLAQVSNMEVIKAAMSKGINKYVII--VYSDALSSLFFLFCSFLFHRS-ERPQLTFSILCSF   79 (332)
Q Consensus         3 ~~~~~~~~~~~~l~li~~~~iwg~~~v~~K~~~~~~~~p~~~~--~~R~~~a~l~ll~~~~~~~~~-~~~~~~~~~~~~~   79 (332)
                      .+..+.++.++....+.-++.=-..-+.-|.++...--|..+.  .++.+.+.+.+...-..  |- +-++++++..++.
T Consensus         3 ~~~~~~~~~~~l~sa~~Y~~sS~lm~vvNK~vls~y~f~~~l~l~~~Q~l~s~~~v~~lk~~--~lv~~~~l~~~~~kk~   80 (314)
T KOG1444|consen    3 SDEGSKKQSSPLLSALFYCLSSILMTVVNKIVLSSYNFPMGLLLMLLQSLASVLVVLVLKRL--GLVNFRPLDLRTAKKW   80 (314)
T ss_pred             ccccchhhhhhhHHHHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHh--ceeecCCcChHHHHHH
Confidence            3444333333444444333333344555787776532333333  47888777766533211  11 1256778888888


Q ss_pred             HHHHHHHHHHHHHHHHhhcccChhhHHHhhhhhHHHHHHHHHHHHhhccccccccccchhhhhhheeccceeeeecCCCC
Q 019995           80 FLLSVFGCSSQIFSFVGIQYSSPTLSTAMLNLIPAFTFVLAIIFRLEKLNWENKSSQAKSLGTFASIGGAFVVTFYKGPP  159 (332)
Q Consensus        80 ~~~gl~g~~~~~~~~~gl~~t~a~~asii~~~~Pv~~~ila~l~~~E~l~~~~~~~~~k~iGi~l~~~Gv~ll~~~~g~~  159 (332)
                      +...++..+..+.-..+++|.+...-+++-+.+|+++++...++++.+.+++      -+..+....+|..+....   +
T Consensus        81 ~P~~~lf~~~i~t~~~slk~lnVpm~tv~kn~tii~~ai~E~lf~~~~~~~~------v~~Sv~~m~~~s~~~~~~---d  151 (314)
T KOG1444|consen   81 FPVSLLFVGMLFTGSKSLKYLNVPMFTVFKNLTIILTAIGEVLFFGKRPSNK------VWASVFAMIIGSVAAAFT---D  151 (314)
T ss_pred             ccHHHHHHHHHHHccccccccCchHHHHHhhchHHHHHHhHHhhcCcCchhh------HHHHHHHHHHHHHhhccc---c
Confidence            8999988888888889999999999999999999999999999988666554      466677777776554311   1


Q ss_pred             CcCCCCCCCCCCcccCCCCccchhHHHHHHHHHHHHHHHHHHHHHHHHhcc-hhHHHHHHHHHHHHHHHHHHHHHHcCC-
Q 019995          160 LIGELSHSGSPRRLLLSPQLSWILGGFFLAAEAFMNSAWFILQALILRKFA-AVLIIMFYLFFFNTILSTAFALIVVSE-  237 (332)
Q Consensus       160 ~~~~~~~~~~~~~~~~~~~~~~~~G~~l~L~aa~~~A~~~vl~~~~~~~~~-~~~~~~~~~~~~g~i~l~~~~~~~~~~-  237 (332)
                      .                  .-...|..+++...++-+.+.+..||..+... +...++++..+.....+.....++++- 
T Consensus       152 ~------------------sf~~~gY~w~~~n~~~~a~~~v~~kk~vd~~~l~~~~lv~yNnl~~L~~l~~~~~~~ge~~  213 (314)
T KOG1444|consen  152 L------------------SFNLRGYSWALANCLTTAAFVVYVKKSVDSANLNKFGLVFYNNLLSLPPLLILSFITGELD  213 (314)
T ss_pred             c------------------eecchhHHHHHHHHHHHHHHHHHHHHhhccccccceeEEeehhHHHHHHHHHHHHHhcchH
Confidence            1                  01134889999999999999999888754321 355678899999888888887666541 


Q ss_pred             -----CCCccccchhhHHHHHHHh---hHHHHHHHHHHhccc-h--hhhhhchHHHHHHHHHHHHhCCccccchhh---h
Q 019995          238 -----PSDWKLGLDIGLVAVLYSV---SSYWHWVSSWLVHMV-P--VENWTSLCINVQALGHCLLYCHGCRHCRRR---F  303 (332)
Q Consensus       238 -----~~~~~~~~~~~~~~l~~~g---t~i~~~l~~~~l~~~-~--~s~~~~l~Pv~a~il~~~~LgE~~~~~~~~---~  303 (332)
                           .+.|...  ..+..+...|   -++.|. -.|+.+.. +  .++.....-..+.+.+..+.|++.++.+-.   +
T Consensus       214 ~l~~~~~~~~~~--~~~~~~~lScv~gf~isy~-s~~ct~~~SAtT~tivG~~n~l~t~l~~ll~~d~~~~~~n~~gll~  290 (314)
T KOG1444|consen  214 ALSLNFDNWSDS--SVLVVMLLSCVMGFGISYT-SFLCTRVNSATTTTIVGAKNKLLTYLGGLLFGDKPFTFLNVIGLLV  290 (314)
T ss_pred             HHHhhcccccch--hHHHHHHHHHHHHHHHHHH-HHHHHhhccccceeehhhhhhHHHHHHHHhcCCceechhhhHHHHH
Confidence                 1112211  1234444444   333333 33555555 3  445554444555666666666666664443   3


Q ss_pred             -hhheee--eeeeccCCc
Q 019995          304 -LSWKVL--LINFFSNDF  318 (332)
Q Consensus       304 -~~~~~~--~~~~~~~~~  318 (332)
                       ..+||+  ..+..|||+
T Consensus       291 ~~~ggv~Y~~~~~~~k~~  308 (314)
T KOG1444|consen  291 GFFGGVLYSYATFRKKKQ  308 (314)
T ss_pred             HhhhhhHHhhhhhhhccC
Confidence             344454  344444443

>PF03151 TPT: Triose-phosphate Transporter family; InterPro: IPR004853 This family consists entirely of aligned regions from Drosophila melanogaster proteins

Probab=98.38  E-value=7.4e-06  Score=68.81  Aligned_cols=132  Identities=17%  Similarity=0.259  Sum_probs=108.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhC------CCChHHHHHHHHHHHHHHHHHHHHHhhcCCC-C---CC-------CHHHH
Q 019995           14 SVGMVIVLLAQVSNMEVIKAAMSK------GINKYVIIVYSDALSSLFFLFCSFLFHRSER-P---QL-------TFSIL   76 (332)
Q Consensus        14 ~l~li~~~~iwg~~~v~~K~~~~~------~~~p~~~~~~R~~~a~l~ll~~~~~~~~~~~-~---~~-------~~~~~   76 (332)
                      ....+.+.+.-+...+..|..++.      ..++.....+-...+.+++.|.....+.... +   ..       ..+.+
T Consensus         2 ~~~~l~s~~~~al~~v~~~~~~~~~~~~~~~~~~~~l~~~~~~~s~~~l~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~   81 (153)
T PF03151_consen    2 FILALASSLFSALRNVLIKKLLKKVSSNSKKLNPLNLLYYNSPISFIILLPLAFLLEGPQLSSFFSEIFGEELSSDPNFI   81 (153)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhcccccccCCCHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHhhhhhhcchHHHH
Confidence            456778888899999999998887      6899999999999999999998777554321 0   00       12334


Q ss_pred             HHHHHHHHHHHHHHHHHHHhhcccChhhHHHhhhhhHHHHHHHHHHHHhhccccccccccchhhhhhheecccee
Q 019995           77 CSFFLLSVFGCSSQIFSFVGIQYSSPTLSTAMLNLIPAFTFVLAIIFRLEKLNWENKSSQAKSLGTFASIGGAFV  151 (332)
Q Consensus        77 ~~~~~~gl~g~~~~~~~~~gl~~t~a~~asii~~~~Pv~~~ila~l~~~E~l~~~~~~~~~k~iGi~l~~~Gv~l  151 (332)
                      ..++..|+++...+...+..+++++|...++....-.+.+.++++++++|+++.+      +++|+++++.|+..
T Consensus        82 ~~~~~~~~~~~~~n~~~f~~i~~tS~lt~~v~~~~K~~~~i~~s~~~f~~~~t~~------~~~G~~l~~~G~~~  150 (153)
T PF03151_consen   82 FLLILSGLLAFLYNLSSFLLIKLTSPLTYSVLGNVKRILVILLSVIFFGEPITPL------QIIGIVLALVGVLL  150 (153)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhhhcChhHHHHHHHHHHHHHHHHHhhhcCCcCCHH------HHHHHHHHHHHHhe
Confidence            4555666677888999999999999999999999999999999999999999866      49999999999864

O49724 from SWISSPROT contains three repeats of this region. In other proteins, the aligned region is located towards the C terminus. The function of the aligned region is unknown.

>PTZ00343 triose or hexose phosphate/phosphate translocator; Provisional

Probab=98.30  E-value=1.1e-05  Score=77.74  Aligned_cols=135  Identities=17%  Similarity=0.121  Sum_probs=98.5

Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHhC------CCChHHHHHHHHHHHHHHHHHHHHHhhcCCC-----------CCCCH
Q 019995           11 ALPSVGMVIVLLAQVSNMEVIKAAMSK------GINKYVIIVYSDALSSLFFLFCSFLFHRSER-----------PQLTF   73 (332)
Q Consensus        11 ~~~~l~li~~~~iwg~~~v~~K~~~~~------~~~p~~~~~~R~~~a~l~ll~~~~~~~~~~~-----------~~~~~   73 (332)
                      ..+.++.+++++.|+...+..|..++.      +.++.....+-..+++++++|+....+....           .....
T Consensus       193 ~~G~~~~l~s~~~~a~~~i~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lp~~~~~e~~~~~~~~~~~~~~~~~~~~  272 (350)
T PTZ00343        193 WLAFWCAMLSNLGSSLRSIFAKKTMKNKSEIGENLTASNIYMLLTLIASLISLPLVLFFEGKKWVPVWTNYTANMTNYTK  272 (350)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhcccccccccCCHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhhhcccccch
Confidence            457888999999999999999998764      2567767777788999999988764322100           00011


Q ss_pred             HHHHHHHHHH-HHHHHHHHHHHHhhcccChhhHHHhhhhhHHHHHHHHHHHHhhccccccccccchhhhhhheecccee
Q 019995           74 SILCSFFLLS-VFGCSSQIFSFVGIQYSSPTLSTAMLNLIPAFTFVLAIIFRLEKLNWENKSSQAKSLGTFASIGGAFV  151 (332)
Q Consensus        74 ~~~~~~~~~g-l~g~~~~~~~~~gl~~t~a~~asii~~~~Pv~~~ila~l~~~E~l~~~~~~~~~k~iGi~l~~~Gv~l  151 (332)
                      ......+..+ +.....+.+-+++++++++.++++..++-|+++.++++++++|+++..+      ++|.++.+.|+.+
T Consensus       273 ~~~l~~i~~s~l~~~l~n~~~f~~l~~~s~~t~sv~~~lk~V~~iv~s~l~~ge~lt~~~------~iG~~lii~Gv~l  345 (350)
T PTZ00343        273 GIIIFKIFFSGVWYYLYNEVAFYCLGKVNQVTHAVANTLKRVVIIVSSIIIFQTQVTLLG------YLGMAVAILGALL  345 (350)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHhhhhHHHhCCCCchHh------HHHHHHHHHHHHH
Confidence            1111112222 2224444555579999999999999999999999999999999998764      9999999999865

>KOG2766 consensus Predicted membrane protein [Function unknown]

Probab=98.22  E-value=5.2e-06  Score=74.88  Aligned_cols=171  Identities=17%  Similarity=0.168  Sum_probs=121.0

Q ss_pred             ChHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHhhcccChhhHHHhhhhhHHHHHHH
Q 019995           40 NKYVIIVYSDALSSLFFLFCSFLFHRSERPQLTFSILCSFFLLSVFGCSSQIFSFVGIQYSSPTLSTAMLNLIPAFTFVL  119 (332)
Q Consensus        40 ~p~~~~~~R~~~a~l~ll~~~~~~~~~~~~~~~~~~~~~~~~~gl~g~~~~~~~~~gl~~t~a~~asii~~~~Pv~~~il  119 (332)
                      .|..=.+.-+..-+++-.|....+ ++   .++ ..|...+++|+...-.+++...|.|||+-+.+.++-.-.-..+.++
T Consensus        47 ~Pt~QtFl~Y~LLalVY~~~~~fR-~~---~~~-~~~~hYilla~~DVEaNy~vV~AyQyTsmtSi~lLDcwaip~v~~l  121 (336)
T KOG2766|consen   47 APTSQTFLNYVLLALVYGPIMLFR-RK---YIK-AKWRHYILLAFVDVEANYFVVKAYQYTSMTSIMLLDCWAIPCVLVL  121 (336)
T ss_pred             CccHHHHHHHHHHHHHHhhHHHhh-hH---HHH-HHHHHhhheeEEeecccEEEeeehhhcchHHHHHHHHhhhHHHHHH
Confidence            344445555555555555555442 22   122 2344577888888667777888999999998888877666667889


Q ss_pred             HHHHHhhccccccccccchhhhhhheeccceeeeecCCCCCcCCCCCCCCCCcccCCCCccchhHHHHHHHHHHHHHHHH
Q 019995          120 AIIFRLEKLNWENKSSQAKSLGTFASIGGAFVVTFYKGPPLIGELSHSGSPRRLLLSPQLSWILGGFFLAAEAFMNSAWF  199 (332)
Q Consensus       120 a~l~~~E~l~~~~~~~~~k~iGi~l~~~Gv~ll~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~G~~l~L~aa~~~A~~~  199 (332)
                      +|+++|.|-+      +.|+.|+.+|+.|+..+++.+   .+        .  ++..++.+...||.+.+.+|.+||..+
T Consensus       122 sw~fLktrYr------lmki~gV~iCi~GvvmvV~sD---V~--------a--gd~aggsnp~~GD~lvi~GATlYaVSN  182 (336)
T KOG2766|consen  122 SWFFLKTRYR------LMKISGVVICIVGVVMVVFSD---VH--------A--GDRAGGSNPVKGDFLVIAGATLYAVSN  182 (336)
T ss_pred             HHHHHHHHHh------hheeeeEEeEecceEEEEEee---ec--------c--ccccCCCCCccCcEEEEecceeeeecc
Confidence            9999998754      347999999999999887542   11        0  112234455789999999999999999


Q ss_pred             HHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHHHHcC
Q 019995          200 ILQALILRKFAAVLIIMFYLFFFNTILSTAFALIVVS  236 (332)
Q Consensus       200 vl~~~~~~~~~~~~~~~~~~~~~g~i~l~~~~~~~~~  236 (332)
                      +....+.|+.| ....+....++|++...+= .+++.
T Consensus       183 v~EEflvkn~d-~~elm~~lgLfGaIIsaIQ-~i~~~  217 (336)
T KOG2766|consen  183 VSEEFLVKNAD-RVELMGFLGLFGAIISAIQ-FIFER  217 (336)
T ss_pred             ccHHHHHhcCc-HHHHHHHHHHHHHHHHHHH-Hhhhc
Confidence            99888899985 5666677778898887665 44444

>COG0697 RhaT Permeases of the drug/metabolite transporter (DMT) superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / General function prediction only]

Probab=98.21  E-value=2.3e-05  Score=72.00  Aligned_cols=132  Identities=14%  Similarity=0.165  Sum_probs=102.3

Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHhCCCChHHHHH-HHHHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHHH-HH
Q 019995           11 ALPSVGMVIVLLAQVSNMEVIKAAMSKGINKYVIIV-YSDALSSLFFLFCSFLFHRSERPQLTFSILCSFFLLSVFG-CS   88 (332)
Q Consensus        11 ~~~~l~li~~~~iwg~~~v~~K~~~~~~~~p~~~~~-~R~~~a~l~ll~~~~~~~~~~~~~~~~~~~~~~~~~gl~g-~~   88 (332)
                      ..+.+..+.+.+.|+...+..|...  ..++..... +.+..+..+..+.... .+.  ...+.+++......|+++ ..
T Consensus       153 ~~g~~~~l~a~~~~a~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~--~~~~~~~~~~~~~~g~~~~~i  227 (292)
T COG0697         153 LLGLLLALAAALLWALYTALVKRLS--RLGPVTLALLLQLLLALLLLLLFFLS-GFG--APILSRAWLLLLYLGVFSTGL  227 (292)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhc--CCChHHHHHHHHHHHHHHHHHHHHhc-ccc--ccCCHHHHHHHHHHHHHHHHH
Confidence            4688888999999999999999765  367777776 4444223333222211 111  234567788888999998 57


Q ss_pred             HHHHHHHhhcccChhhHHHhhhhhHHHHHHHHHHHHhhccccccccccchhhhhhheeccceeee
Q 019995           89 SQIFSFVGIQYSSPTLSTAMLNLIPAFTFVLAIIFRLEKLNWENKSSQAKSLGTFASIGGAFVVT  153 (332)
Q Consensus        89 ~~~~~~~gl~~t~a~~asii~~~~Pv~~~ila~l~~~E~l~~~~~~~~~k~iGi~l~~~Gv~ll~  153 (332)
                      .+.+++.+++..+++.++.+.++.|++..++++++++|+++.++      ++|.++.+.|+.+..
T Consensus       228 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~l~~~e~~~~~~------~~G~~li~~g~~l~~  286 (292)
T COG0697         228 AYLLWYYALRLLGASLVALLSLLEPVFAALLGVLLLGEPLSPAQ------LLGAALVVLGVLLAS  286 (292)
T ss_pred             HHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHhCCCCcHHH------HHHHHHHHHHHHHHh
Confidence            99999999999999999999999999999999999999998764      899999999987643

>TIGR00776 RhaT RhaT L-rhamnose-proton symporter family protein

Probab=98.21  E-value=1.2e-05  Score=75.36  Aligned_cols=132  Identities=15%  Similarity=0.063  Sum_probs=99.2

Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHH----HHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHHH
Q 019995           11 ALPSVGMVIVLLAQVSNMEVIKAAMSKGINKYVIIVYSDA----LSSLFFLFCSFLFHRSERPQLTFSILCSFFLLSVFG   86 (332)
Q Consensus        11 ~~~~l~li~~~~iwg~~~v~~K~~~~~~~~p~~~~~~R~~----~a~l~ll~~~~~~~~~~~~~~~~~~~~~~~~~gl~g   86 (332)
                      .|+....+++.+.++...+..|..   +.||...++....    .+.++..++     ++.++. +.+.....++.|++.
T Consensus       151 ~~Gi~~~l~sg~~y~~~~~~~~~~---~~~~~~~~~~~~~g~~~~~~~~~~~~-----~~~~~~-~~~~~~~~~~~Gi~~  221 (290)
T TIGR00776       151 KKGILLLLMSTIGYLVYVVVAKAF---GVDGLSVLLPQAIGMVIGGIIFNLGH-----ILAKPL-KKYAILLNILPGLMW  221 (290)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHc---CCCcceehhHHHHHHHHHHHHHHHHH-----hcccch-HHHHHHHHHHHHHHH
Confidence            678999999999999999999964   3799988655554    444333332     111222 333444455688877


Q ss_pred             HHHHHHHHHhhc-ccChhhHHHhhhhhHHHHHHHHHHHHhhccccccccccchhhhhhheeccceeee
Q 019995           87 CSSQIFSFVGIQ-YSSPTLSTAMLNLIPAFTFVLAIIFRLEKLNWENKSSQAKSLGTFASIGGAFVVT  153 (332)
Q Consensus        87 ~~~~~~~~~gl~-~t~a~~asii~~~~Pv~~~ila~l~~~E~l~~~~~~~~~k~iGi~l~~~Gv~ll~  153 (332)
                      ...+.+|+.+.+ +.+++.++++.+..|+...+.+.+++||+.++++.  +.-.+|.++-+.|+.++.
T Consensus       222 ~ia~~~y~~~~~~~~~~~~~~~ls~~~pvia~~~~v~~l~E~~~~~~~--~~~~iG~~lIi~~~~l~~  287 (290)
T TIGR00776       222 GIGNFFYLFSAQPKVGVATSFSLSQLGVIISTLGGILILGEKKTKREM--IAISVGIILIIIAANILG  287 (290)
T ss_pred             HHHHHHHHHHcccccchhhHHHHHHHHHHHHHHHHHHHhccCCCccee--ehhHHHHHHHHHHHHHHh
Confidence            788899999999 99999999999999999999999999999988862  112388888888886643

These proteins are members of the L-Rhamnose Symporter (RhaT) Family (TC 2.A.7). This family includes two characterized members, both of which function as L-rhamnose:H+ symporters and have 10 GES predicted transmembrane domains.

>KOG1443 consensus Predicted integral membrane protein [Function unknown]

Probab=98.19  E-value=0.00018  Score=66.60  Aligned_cols=259  Identities=15%  Similarity=0.109  Sum_probs=157.6

Q ss_pred             HHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHhhcCC---CCCCCHHHHH-HHHHHHHHHHHHHHHHHHhhcc
Q 019995           24 QVSNMEVIKAAMSKGINKYVIIVYSDALSSLFFLFCSFLFHRSE---RPQLTFSILC-SFFLLSVFGCSSQIFSFVGIQY   99 (332)
Q Consensus        24 wg~~~v~~K~~~~~~~~p~~~~~~R~~~a~l~ll~~~~~~~~~~---~~~~~~~~~~-~~~~~gl~g~~~~~~~~~gl~~   99 (332)
                      -|..+...+.-.+-+ -|..++.++...=.++-.......+++.   |...++++-. +....|+..+....+-.++++|
T Consensus        29 i~Ltf~~~~~~~~f~-fPLf~ts~h~~v~flfa~~~~~l~~~~~~r~r~~~sw~~~Lr~~aPtalata~DIGLSN~sl~y  107 (349)
T KOG1443|consen   29 IGLTFYFKWLTKNFH-FPLFVTSLHLAVKFLFAALSRRLYQCSVPRARVVLSWRDYLRRLAPTALATALDIGLSNWSLEY  107 (349)
T ss_pred             HHHHHHhhhhhcCcC-CchHHHHHHHHHHHHHHHHHHHHHhccCCccccCCcHHHHHHHhhhhhhhhhcccccccceeee
Confidence            355666666554433 4566666555443333222222222221   2245555443 4567777778888999999999


Q ss_pred             cChhhHHHhhhhhHHHHHHHHHHHHhhccccccccccchhhhhhheeccceeeeecCCCCCcCCCCCCCCCCcccCCCCc
Q 019995          100 SSPTLSTAMLNLIPAFTFVLAIIFRLEKLNWENKSSQAKSLGTFASIGGAFVVTFYKGPPLIGELSHSGSPRRLLLSPQL  179 (332)
Q Consensus       100 t~a~~asii~~~~Pv~~~ila~l~~~E~l~~~~~~~~~k~iGi~l~~~Gv~ll~~~~g~~~~~~~~~~~~~~~~~~~~~~  179 (332)
                      ++.+.=+..=+++++|+.+.+.++.-||.+++      -..-+.+-..|+++.+ .+..+                   .
T Consensus       108 VtlSlYTM~KSSsi~FIllFs~if~lEk~~w~------L~l~v~lI~~Glflft-~KsTq-------------------f  161 (349)
T KOG1443|consen  108 VTLSLYTMTKSSSILFILLFSLIFKLEKFRWA------LVLIVLLIAVGLFLFT-YKSTQ-------------------F  161 (349)
T ss_pred             eeeeeeeeccccHHHHHHHHHHHHHhHHHHHH------HHHHHHHHhhheeEEE-ecccc-------------------e
Confidence            99999999999999999999999999998764      2444455556776665 33221                   1


Q ss_pred             cchhHHHHHHHHHHHHHHHHHHHHHHHHhcc----hhHHHHHHHHHHHHHHHHHHHHHHcCCCC-----Cccc-cchhhH
Q 019995          180 SWILGGFFLAAEAFMNSAWFILQALILRKFA----AVLIIMFYLFFFNTILSTAFALIVVSEPS-----DWKL-GLDIGL  249 (332)
Q Consensus       180 ~~~~G~~l~L~aa~~~A~~~vl~~~~~~~~~----~~~~~~~~~~~~g~i~l~~~~~~~~~~~~-----~~~~-~~~~~~  249 (332)
                       ...|-.+.+.|+++-++-=.+.++.+++.|    +|+.......-.=.+.+++..+.+|++..     .|.. .+...+
T Consensus       162 -~i~Gf~lv~~aS~~sGlRW~~tQ~ll~~~~~~~~~P~~ti~~l~p~M~~~Ll~~~l~fEG~~~~~~s~~f~~~d~~~~~  240 (349)
T KOG1443|consen  162 -NIEGFFLVLAASLLSGLRWAFTQMLLRNQPSAKRNPIDTIFHLQPWMSIGLLPLSLLFEGLHLITSSSIFRFQDTGLIL  240 (349)
T ss_pred             -eehhHHHHHHHHHhhhhhHHHHHHHHhcCccccCCCeeeHHHhhhHHHHHHHHHHHHHcccccchhhhHHHhcCccHHH
Confidence             156878888888776665555566666543    45555554444555666777777887421     2222 121233


Q ss_pred             HHH--HHHhhHHHHHHHH---HHhccch---hhhhhchHHHHHHHHHHHHhCCccccchhh---hhhheeee
Q 019995          250 VAV--LYSVSSYWHWVSS---WLVHMVP---VENWTSLCINVQALGHCLLYCHGCRHCRRR---FLSWKVLL  310 (332)
Q Consensus       250 ~~l--~~~gt~i~~~l~~---~~l~~~~---~s~~~~l~Pv~a~il~~~~LgE~~~~~~~~---~~~~~~~~  310 (332)
                      ..+  +.+|...++.+-.   ...++.+   .+++.-.--+...++|..+.+|.++.++-+   .-..|+..
T Consensus       241 rv~g~i~l~g~laF~l~~sEflLl~~Ts~ltlSIaGI~Kel~tl~la~ii~~d~ls~lN~~Gl~i~~agi~~  312 (349)
T KOG1443|consen  241 RVIGLISLGGLLAFLLEFSEFLLLSRTSSLTLSIAGIVKEVCTLLLAIIILKDQLSLLNWLGLAICLAGILL  312 (349)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHheeeeccceeeeHHHHHHHHHHHHHHHHHhhcchhhhHHHHHHHHHHHHHH
Confidence            333  2333444543332   2334443   666666777889999999999999965544   24445543

>PRK15430 putative chloramphenical resistance permease RarD; Provisional

Probab=98.18  E-value=1.5e-05  Score=74.90  Aligned_cols=129  Identities=9%  Similarity=-0.004  Sum_probs=87.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHhCC-CChHHHHHHHHHHHHHHHHHHHHHhhcCC--CCCCCHHHHHHHHHHHHHHHHHHHH
Q 019995           16 GMVIVLLAQVSNMEVIKAAMSKG-INKYVIIVYSDALSSLFFLFCSFLFHRSE--RPQLTFSILCSFFLLSVFGCSSQIF   92 (332)
Q Consensus        16 ~li~~~~iwg~~~v~~K~~~~~~-~~p~~~~~~R~~~a~l~ll~~~~~~~~~~--~~~~~~~~~~~~~~~gl~g~~~~~~   92 (332)
                      ..+.+++.|+...+..|...+++ .++.....+-..++.+.+.+..   ....  ....+...+......|+...+.+.+
T Consensus       153 ~~l~aa~~~a~~~i~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~g~~t~i~~~~  229 (296)
T PRK15430        153 IALGLAFSFAFYGLVRKKIAVEAQTGMLIETMWLLPVAAIYLFAIA---DSSTSHMGQNPMSLNLLLIAAGIVTTVPLLC  229 (296)
T ss_pred             HHHHHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHHHHHHHHHHc---cCCcccccCCcHHHHHHHHHHHHHHHHHHHH
Confidence            45677899999999998753221 1223333444444444332221   1111  0111222233344455545789999


Q ss_pred             HHHhhcccChhhHHHhhhhhHHHHHHHHHHHHhhccccccccccchhhhhhheeccceeee
Q 019995           93 SFVGIQYSSPTLSTAMLNLIPAFTFVLAIIFRLEKLNWENKSSQAKSLGTFASIGGAFVVT  153 (332)
Q Consensus        93 ~~~gl~~t~a~~asii~~~~Pv~~~ila~l~~~E~l~~~~~~~~~k~iGi~l~~~Gv~ll~  153 (332)
                      ++.++++.+++.++.+.++.|++..++++++++|+++..+      ++|.++.+.|+.++.
T Consensus       230 ~~~a~~~~~a~~~s~~~~l~Pv~a~~~g~l~l~E~~~~~~------~~G~~lI~~~~~v~~  284 (296)
T PRK15430        230 FTAAATRLRLSTLGFFQYIGPTLMFLLAVTFYGEKPGADK------MVTFAFIWVALAIFV  284 (296)
T ss_pred             HHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHH------HHHHHHHHHHHHHHH
Confidence            9999999999999999999999999999999999998764      899998888876654

>PRK15051 4-amino-4-deoxy-L-arabinose-phosphoundecaprenol flippase subunit ArnE; Provisional

Probab=98.14  E-value=4.3e-06  Score=67.19  Aligned_cols=68  Identities=16%  Similarity=0.146  Sum_probs=60.0

Q ss_pred             HHHHHHH-HHHHHHHHHhhcccChhhHHHhhhhhHHHHHHHHHHHHhhccccccccccchhhhhhheeccceeee
Q 019995           80 FLLSVFG-CSSQIFSFVGIQYSSPTLSTAMLNLIPAFTFVLAIIFRLEKLNWENKSSQAKSLGTFASIGGAFVVT  153 (332)
Q Consensus        80 ~~~gl~g-~~~~~~~~~gl~~t~a~~asii~~~~Pv~~~ila~l~~~E~l~~~~~~~~~k~iGi~l~~~Gv~ll~  153 (332)
                      ...++.+ ...+.++..++++.|.+.|..+.++.|+++.+++++++|||++.+      |++|+++.++|+.++.
T Consensus        40 ~~~~~~~~~l~~~~~~~al~~iplg~Ay~~~~l~~v~~~~~~~l~f~E~ls~~------~~~Gi~lii~Gv~~i~  108 (111)
T PRK15051         40 LGLALACLGLAMVLWLLVLQNVPVGIAYPMLSLNFVWVTLAAVKLWHEPVSPR------HWCGVAFIIGGIVILG  108 (111)
T ss_pred             HHHHHHHHHHHHHHHHHHHhhCChHHHHHHHHHHHHHHHHHHHHHhCCCCCHH------HHHHHHHHHHHHHHHh
Confidence            3444466 788999999999999999999999999999999999999999876      4999999999997653

>PF03151 TPT: Triose-phosphate Transporter family; InterPro: IPR004853 This family consists entirely of aligned regions from Drosophila melanogaster proteins

Probab=97.99  E-value=0.00012  Score=61.30  Aligned_cols=118  Identities=12%  Similarity=0.125  Sum_probs=87.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHh------cchhHHHHHHHHHHHHHHHHHHHHHHcCCCCC--cc-c-----c-chhh
Q 019995          184 GGFFLAAEAFMNSAWFILQALILRK------FAAVLIIMFYLFFFNTILSTAFALIVVSEPSD--WK-L-----G-LDIG  248 (332)
Q Consensus       184 G~~l~L~aa~~~A~~~vl~~~~~~~------~~~~~~~~~~~~~~g~i~l~~~~~~~~~~~~~--~~-~-----~-~~~~  248 (332)
                      |.++.+.|.++.|++.++.|+..++      ..++..+..+....+.+.+++.....|+....  .. .     . ....
T Consensus         1 G~~~~l~s~~~~al~~v~~~~~~~~~~~~~~~~~~~~l~~~~~~~s~~~l~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~   80 (153)
T PF03151_consen    1 GFILALASSLFSALRNVLIKKLLKKVSSNSKKLNPLNLLYYNSPISFIILLPLAFLLEGPQLSSFFSEIFGEELSSDPNF   80 (153)
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHHhcccccccCCCHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHhhhhhhcchHHH
Confidence            5678999999999999999998666      23788899999999999999998877664211  10 0     0 1122


Q ss_pred             HHHHHHHh--hHHHHHHHHHHhccc-h--hhhhhchHHHHHHHHHHHHhCCccccchh
Q 019995          249 LVAVLYSV--SSYWHWVSSWLVHMV-P--VENWTSLCINVQALGHCLLYCHGCRHCRR  301 (332)
Q Consensus       249 ~~~l~~~g--t~i~~~l~~~~l~~~-~--~s~~~~l~Pv~a~il~~~~LgE~~~~~~~  301 (332)
                      +..++..|  ...-.....+.+++. |  .++...+-.+...+.|++++||+++..+-
T Consensus        81 ~~~~~~~~~~~~~~n~~~f~~i~~tS~lt~~v~~~~K~~~~i~~s~~~f~~~~t~~~~  138 (153)
T PF03151_consen   81 IFLLILSGLLAFLYNLSSFLLIKLTSPLTYSVLGNVKRILVILLSVIFFGEPITPLQI  138 (153)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhhhcChhHHHHHHHHHHHHHHHHHhhhcCCcCCHHHH
Confidence            33333444  444456666888888 7  88888899999999999999999886543

O49724 from SWISSPROT contains three repeats of this region. In other proteins, the aligned region is located towards the C terminus. The function of the aligned region is unknown.

>KOG4314 consensus Predicted carbohydrate/phosphate translocator [General function prediction only]

Probab=97.96  E-value=3.9e-05  Score=66.85  Aligned_cols=103  Identities=21%  Similarity=0.334  Sum_probs=87.7

Q ss_pred             HHHHHHHHHHHHHHHhhcccChhhHHHhhhhhHHHHHHHHHHHHhhccccccccccchhhhhhheeccceeeeecCCCCC
Q 019995           81 LLSVFGCSSQIFSFVGIQYSSPTLSTAMLNLIPAFTFVLAIIFRLEKLNWENKSSQAKSLGTFASIGGAFVVTFYKGPPL  160 (332)
Q Consensus        81 ~~gl~g~~~~~~~~~gl~~t~a~~asii~~~~Pv~~~ila~l~~~E~l~~~~~~~~~k~iGi~l~~~Gv~ll~~~~g~~~  160 (332)
                      ...++.++.++.|..+++..+++.++.+..+...|+.++++++++||+...      |++..++++.|++.+...+    
T Consensus        58 PF~i~Wt~aNY~Yl~AL~~is~s~asai~~CNaAFVfiLa~IVL~D~~~~~------kIlaailAI~GiVmiay~D----  127 (290)
T KOG4314|consen   58 PFSIFWTGANYLYLLALKKISASDASAIFACNAAFVFILAIIVLGDRFMGF------KILAAILAIGGIVMIAYAD----  127 (290)
T ss_pred             ceEEEEecCCcHHHHHHHhcChhhhHHHHHhhHHHHHHHHHHHhccchhhh------hHHHHHHHhCcEEEEEecc----
Confidence            344555788999999999999999999999999999999999999998754      6999999999998876321    


Q ss_pred             cCCCCCCCCCCcccCCCCccchhHHHHHHHHHHHHHHHHHHHHHHHHh
Q 019995          161 IGELSHSGSPRRLLLSPQLSWILGGFFLAAEAFMNSAWFILQALILRK  208 (332)
Q Consensus       161 ~~~~~~~~~~~~~~~~~~~~~~~G~~l~L~aa~~~A~~~vl~~~~~~~  208 (332)
                                     ..+.++..|+.++.++|+.-|+|-++-|+...+
T Consensus       128 ---------------N~~a~e~iGi~~AV~SA~~aAlYKV~FK~~iGn  160 (290)
T KOG4314|consen  128 ---------------NEHADEIIGIACAVGSAFMAALYKVLFKMFIGN  160 (290)
T ss_pred             ---------------chhhhhhhhHHHHHHHHHHHHHHHHHHHHHhcc
Confidence                           123456899999999999999999999987644

>TIGR00688 rarD rarD protein

Probab=97.92  E-value=9.5e-05  Score=67.73  Aligned_cols=126  Identities=10%  Similarity=0.004  Sum_probs=89.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHHHHcCCC---CCcccc-chhhHHHHHHHh--h
Q 019995          184 GGFFLAAEAFMNSAWFILQALILRKFAAVLIIMFYLFFFNTILSTAFALIVVSEP---SDWKLG-LDIGLVAVLYSV--S  257 (332)
Q Consensus       184 G~~l~L~aa~~~A~~~vl~~~~~~~~~~~~~~~~~~~~~g~i~l~~~~~~~~~~~---~~~~~~-~~~~~~~l~~~g--t  257 (332)
                      |..+.++++++|+...+..|. ..+. +|..+.++.++++++.+.+......+..   ..++.. ....+..+...|  .
T Consensus         3 g~~~~i~a~~~wg~~~~~~k~-~~~~-~~~~i~~~R~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~   80 (256)
T TIGR00688         3 GIIVSLLASFLFGYMYYYSKL-LKPL-PATDILGHRMIWSFPFMLLSVTLFRQWAALIERLKRIQKRPLILSLLLCGLLI   80 (256)
T ss_pred             cHHHHHHHHHHHHHHHHHHHH-hccC-CHHHHHHHHHHHHHHHHHHHHHHHcchHHHHHHHhCcccchHHHHHHHHHHHH
Confidence            778999999999999999886 4567 5899999999999888766543322100   001100 111122233334  5


Q ss_pred             HHHHHHHHHHhccc-h--hhhhhchHHHHHHHHHHHHhCCccccchhh---hhhheeeee
Q 019995          258 SYWHWVSSWLVHMV-P--VENWTSLCINVQALGHCLLYCHGCRHCRRR---FLSWKVLLI  311 (332)
Q Consensus       258 ~i~~~l~~~~l~~~-~--~s~~~~l~Pv~a~il~~~~LgE~~~~~~~~---~~~~~~~~~  311 (332)
                      .+.+.++++++++. +  ++...+..|++++++++++++|+++..+-.   ...-||+++
T Consensus        81 ~~~~~~~~~a~~~~~~~~a~~l~~~~Pi~~~lla~~~l~Ek~~~~~~l~~~~~~~Gv~li  140 (256)
T TIGR00688        81 GFNWWLFIWAVNNGSSLEVSLGYLINPLVMVALGRVFLKERISRFQFIAVIIATLGVISN  140 (256)
T ss_pred             HHHHHHHHHHHHcchHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHH
Confidence            67889999999999 4  888899999999999999999999987666   244565543

This uncharacterized protein is predicted to have many membrane-spanning domains.

>KOG3912 consensus Predicted integral membrane protein [General function prediction only]

Probab=97.89  E-value=0.00032  Score=64.36  Aligned_cols=134  Identities=13%  Similarity=0.138  Sum_probs=103.1

Q ss_pred             HHHHHHHHHHHHHHHhhcccChhhHHHhhhhhHHHHHHHHHHHHhhccccccccccchhhhhhheeccceeeeecCCCCC
Q 019995           81 LLSVFGCSSQIFSFVGIQYSSPTLSTAMLNLIPAFTFVLAIIFRLEKLNWENKSSQAKSLGTFASIGGAFVVTFYKGPPL  160 (332)
Q Consensus        81 ~~gl~g~~~~~~~~~gl~~t~a~~asii~~~~Pv~~~ila~l~~~E~l~~~~~~~~~k~iGi~l~~~Gv~ll~~~~g~~~  160 (332)
                      .-+++....-.++|.|+.+|+++.-..+-...-+|+.+++..+++.+++.+      ||+|+....+|++++...+   .
T Consensus        91 ~Pal~Di~gsslm~vgL~lTsASsfQMlRGaviIFvglfst~~Ln~ti~~~------qWl~i~fv~lGlviVg~~d---~  161 (372)
T KOG3912|consen   91 PPALCDIAGSSLMYVGLNLTSASSFQMLRGAVIIFVGLFSTMFLNRTITGR------QWLGILFVSLGLVIVGSLD---V  161 (372)
T ss_pred             ChHHHHHhhhHHHHHHHHHhhHHHHHHhhcchhhhhHHHHHHHHhcccchh------hHHHHHHHHhhhheeeeee---c
Confidence            355666777778889999999999888888999999999999999888766      4899999999998875321   1


Q ss_pred             cCCCCCCCCCCcccCCCCccchhHHHHHHHHHHHHHHHHHHHHHHHHhcc-hhHHHHHHHHHHHHHHHHHHH
Q 019995          161 IGELSHSGSPRRLLLSPQLSWILGGFFLAAEAFMNSAWFILQALILRKFA-AVLIIMFYLFFFNTILSTAFA  231 (332)
Q Consensus       161 ~~~~~~~~~~~~~~~~~~~~~~~G~~l~L~aa~~~A~~~vl~~~~~~~~~-~~~~~~~~~~~~g~i~l~~~~  231 (332)
                      ...++        ..++..+-+.|+++.++|=+.-|..+++-.|.+++.+ +|.....|+.++|.+.+-.++
T Consensus       162 ~~~~~--------p~~d~s~iitGdllIiiaqiivaiQ~v~Eek~l~~~nV~pl~avg~eGlfG~v~~slL~  225 (372)
T KOG3912|consen  162 HLVTD--------PYTDYSSIITGDLLIIIAQIIVAIQMVCEEKQLKKSNVAPLQAVGWEGLFGLVILSLLA  225 (372)
T ss_pred             ccccC--------CccccccchhhhHHHHHHHHHHHHHHHHHHhhhhhccCCHHHHhhhhhhHHHHHHHHHH
Confidence            11100        0112234579999999999999999999999877753 689999999999965554433

>KOG1581 consensus UDP-galactose transporter related protein [Carbohydrate transport and metabolism]

Probab=97.80  E-value=0.0067  Score=56.42  Aligned_cols=239  Identities=15%  Similarity=0.165  Sum_probs=154.9

Q ss_pred             ChHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHhhcccChhhHHHhhh--hhHHHHH
Q 019995           40 NKYVIIVYSDALSSLFFLFCSFLFHRSERPQLTFSILCSFFLLSVFGCSSQIFSFVGIQYSSPTLSTAMLN--LIPAFTF  117 (332)
Q Consensus        40 ~p~~~~~~R~~~a~l~ll~~~~~~~~~~~~~~~~~~~~~~~~~gl~g~~~~~~~~~gl~~t~a~~asii~~--~~Pv~~~  117 (332)
                      +|..+.+.+-+.+.+.=...  +..+|.. ....+.|...-..++-+...-.|.|.+++|.+=-.-.+-=+  ..|+  .
T Consensus        50 ~~~fL~~~q~l~~~~~s~~~--l~~~k~~-~~~~apl~~y~~is~tn~~s~~~~yeaLKyvSyPtq~LaKscKmIPV--m  124 (327)
T KOG1581|consen   50 HSLFLVFCQRLVALLVSYAM--LKWWKKE-LSGVAPLYKYSLISFTNTLSSWCGYEALKYVSYPTQTLAKSCKMIPV--M  124 (327)
T ss_pred             ccHHHHHHHHHHHHHHHHHH--Hhccccc-CCCCCchhHHhHHHHHhhcchHHHHHHHHhccchHHHHHHHhhhhHH--H
Confidence            44555555655555543322  2222222 22234466677888888899999999999986444333322  4454  4


Q ss_pred             HHHHHHHhhccccccccccchhhhhhheeccceeeeecCCCCCcCCCCCCCCCCcccCCCCccchhHHHHHHHHHHHHHH
Q 019995          118 VLAIIFRLEKLNWENKSSQAKSLGTFASIGGAFVVTFYKGPPLIGELSHSGSPRRLLLSPQLSWILGGFFLAAEAFMNSA  197 (332)
Q Consensus       118 ila~l~~~E~l~~~~~~~~~k~iGi~l~~~Gv~ll~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~G~~l~L~aa~~~A~  197 (332)
                      +...++.+.|.+.      .|++..++.-.|+.+..+.+..+. .           ...++.+...|..++...-..=+.
T Consensus       125 lmg~Lvy~~ky~~------~eYl~~~LIs~GvsiF~l~~~s~s-~-----------~~~g~~ns~~G~~Ll~~~L~fDgf  186 (327)
T KOG1581|consen  125 LMGTLVYGRKYSS------FEYLVAFLISLGVSIFSLFPNSDS-S-----------SKSGRENSPIGILLLFGYLLFDGF  186 (327)
T ss_pred             HHHHHHhcCccCc------HHHHHHHHHHhheeeEEEecCCCC-c-----------cccCCCCchHhHHHHHHHHHHHhh
Confidence            5667777766654      468888888889888765533220 0           012234457899888888887777


Q ss_pred             HHHHHHHHHHhcc-hhHHHHHHHHHHHHHHHHHHHHHHcCC-CCCc---cccchhhHHHHHHHh-hHHHHHHHHHHhccc
Q 019995          198 WFILQALILRKFA-AVLIIMFYLFFFNTILSTAFALIVVSE-PSDW---KLGLDIGLVAVLYSV-SSYWHWVSSWLVHMV  271 (332)
Q Consensus       198 ~~vl~~~~~~~~~-~~~~~~~~~~~~g~i~l~~~~~~~~~~-~~~~---~~~~~~~~~~l~~~g-t~i~~~l~~~~l~~~  271 (332)
                      -+..|+++.++.. ++..+++...+++.+...... +..+. ..+.   ..+++..+=-++|.- .++++...++-+++-
T Consensus       187 Tn~tQd~lf~~~k~s~~~mM~~vNLf~~i~~~~~l-i~qg~~~~av~F~~~hp~~~~Di~l~s~~gavGQ~FI~~TI~~F  265 (327)
T KOG1581|consen  187 TNATQDSLFKKYKVSSLHMMFGVNLFSAILNGTYL-ILQGHLLPAVSFIKEHPDVAFDILLYSTCGAVGQLFIFYTIERF  265 (327)
T ss_pred             HHhHHHHHhccCCccHhHHHHHHHHHHHHHHHHhh-hcCCCCchHHHHHHcChhHHHHHHHHHHhhhhhhheehhhHhhc
Confidence            7888999877643 677888888888888887663 32221 1111   122332222334444 888888888999999


Q ss_pred             -h--hhhhhchHHHHHHHHHHHHhCCccccchhh
Q 019995          272 -P--VENWTSLCINVQALGHCLLYCHGCRHCRRR  302 (332)
Q Consensus       272 -~--~s~~~~l~Pv~a~il~~~~LgE~~~~~~~~  302 (332)
                       |  .+..+..-=++++.++.+.+|++++..+-.
T Consensus       266 Gslt~t~I~ttRk~~si~lS~i~f~h~~s~~q~~  299 (327)
T KOG1581|consen  266 GSLTFTTIMTTRKMVSIMLSCIVFGHPLSSEQWL  299 (327)
T ss_pred             ccHHHHHHHHHHHHHHHHHHHHHhCCccchhhcc
Confidence             8  667777788999999999999999985544

>PRK13499 rhamnose-proton symporter; Provisional

Probab=97.77  E-value=0.0034  Score=60.11  Aligned_cols=273  Identities=12%  Similarity=0.042  Sum_probs=152.0

Q ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHH--HHhhcC---CCCCCCHHHHHHHHHHHH
Q 019995           10 AALPSVGMVIVLLAQVSNMEVIKAAMSKGINKYVIIVYSDALSSLFFLFCS--FLFHRS---ERPQLTFSILCSFFLLSV   84 (332)
Q Consensus        10 ~~~~~l~li~~~~iwg~~~v~~K~~~~~~~~p~~~~~~R~~~a~l~ll~~~--~~~~~~---~~~~~~~~~~~~~~~~gl   84 (332)
                      -..+++..++++++||+.++-.|.. +. .|=..+=..-..++.+ +.|+.  .+..+.   .....+.+.+...++-|+
T Consensus         5 ~~~G~~~~~i~~~~~GS~~~p~K~~-k~-w~wE~~W~v~gi~~wl-~~~~~~g~~~~~~f~~~~~~~~~~~~~~~~l~G~   81 (345)
T PRK13499          5 IILGIIWHLIGGASSGSFYAPFKKV-KK-WSWETMWSVGGIFSWL-ILPWLIAALLLPDFWAYYSSFSGSTLLPVFLFGA   81 (345)
T ss_pred             hHHHHHHHHHHHHHhhccccccccc-CC-CchhHHHHHHHHHHHH-HHHHHHHHHHhhhHHHHHHhcCHHHHHHHHHHHH
Confidence            4568889999999999999999983 32 4422220011111111 11211  111111   012345666777777888


Q ss_pred             HHHHHHHHHHHhhcccChhhHHHh-hhhhHHHHHHHHHHHHhhcc---ccccccccchhhhhhheeccceeeeecCCCCC
Q 019995           85 FGCSSQIFSFVGIQYSSPTLSTAM-LNLIPAFTFVLAIIFRLEKL---NWENKSSQAKSLGTFASIGGAFVVTFYKGPPL  160 (332)
Q Consensus        85 ~g~~~~~~~~~gl~~t~a~~asii-~~~~Pv~~~ila~l~~~E~l---~~~~~~~~~k~iGi~l~~~Gv~ll~~~~g~~~  160 (332)
                      +-...|..++.++++...+.+--+ ..++=+...++..++++|.-   +..+  ...-.+|+++.++|+.+...- +.. 
T Consensus        82 ~W~iG~i~~~~s~~~iGvS~~~pIs~Gl~lv~gtL~~~i~~gew~~~~~t~~--g~~~~~gv~liliGi~l~s~A-g~~-  157 (345)
T PRK13499         82 LWGIGGITYGLTMRYLGMSLGIGIAIGITLIVGTLMPPIINGNFDVLLATNG--GRMTLLGVLVALIGVAIVGRA-GQL-  157 (345)
T ss_pred             HHHhhhhhHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHccccccccccch--HHHHHHHHHHHHHHHHHHHHh-hhh-
Confidence            888999999999999998887555 46888888888889988754   3332  234688999999999876521 100 


Q ss_pred             cCCCCCCCCCCcc-cC-CCCccchhHHHHHHHHHHHHHHHH-------HHHHHHHHhcchhHHHHHHHHH---HHHHHHH
Q 019995          161 IGELSHSGSPRRL-LL-SPQLSWILGGFFLAAEAFMNSAWF-------ILQALILRKFAAVLIIMFYLFF---FNTILST  228 (332)
Q Consensus       161 ~~~~~~~~~~~~~-~~-~~~~~~~~G~~l~L~aa~~~A~~~-------vl~~~~~~~~~~~~~~~~~~~~---~g~i~l~  228 (332)
                              .++++ ++ ..+.+...|.+++++|.+.+++|.       ...+...+...++.....-|..   .|+...-
T Consensus       158 --------k~~~~~~~~~~~~~~~KGi~ialisgi~~~~f~~~~~~~~~~~~~a~~~g~~~~~~~lp~~~~~~~G~~~~n  229 (345)
T PRK13499        158 --------KERKMGIKKAEEFNLKKGLILAVMSGIFSACFSFAMDAGKPMHEAAAALGVDPLYAALPSYVVIMGGGAITN  229 (345)
T ss_pred             --------cccccccccccccchHhHHHHHHHHHHHHHHHHHHHhhccchhhhhhhcCCCchHHHHHHHHHHHHHHHHHH
Confidence                    00100 00 123455789999999999999999       4433221111134444444443   4444332


Q ss_pred             -HHHHHH---cCCCC---Ccccc----chhhHHHHHHHh--hHHHHHHHHHHhccc-h---hh---hhhchHHHHHHHHH
Q 019995          229 -AFALIV---VSEPS---DWKLG----LDIGLVAVLYSV--SSYWHWVSSWLVHMV-P---VE---NWTSLCINVQALGH  288 (332)
Q Consensus       229 -~~~~~~---~~~~~---~~~~~----~~~~~~~l~~~g--t~i~~~l~~~~l~~~-~---~s---~~~~l~Pv~a~il~  288 (332)
                       ++....   +++.+   +....    ......+. ..|  =.+++..|..+-++. .   ..   ...-+.-+++.++|
T Consensus       230 ~~~~~~~~~k~~~~~~~~~~~~~~~~~~~n~l~~~-l~G~~W~~~~~~y~~~~~~~g~~~~~~sw~l~m~~~ViistlwG  308 (345)
T PRK13499        230 LGFCFIRLAKNKDLSLKADFSLAKPLLITNVLLSA-LAGVMWYLQFFFYAMGHSKLGAQYDFVSWMLHMSFYVLCGNLWG  308 (345)
T ss_pred             HHHHHHHHhhCCCcccchhccccchhHHHHHHHHH-HHHHHHHHHHHHHHHHHHHcCCccchHHHHHhccHHHHHHHHhh
Confidence             222211   11111   11100    11111111 111  234455566666666 2   22   22245568999999


Q ss_pred             HHHhCCccccc
Q 019995          289 CLLYCHGCRHC  299 (332)
Q Consensus       289 ~~~LgE~~~~~  299 (332)
                      . ++||.=+-+
T Consensus       309 i-~lkE~K~a~  318 (345)
T PRK13499        309 L-VLKEWKGAS  318 (345)
T ss_pred             h-hhhhccCCC
Confidence            8 599987743

>PRK02971 4-amino-4-deoxy-L-arabinose-phosphoundecaprenol flippase subunit ArnF; Provisional

Probab=97.61  E-value=0.00058  Score=56.33  Aligned_cols=116  Identities=17%  Similarity=0.223  Sum_probs=84.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHHH-HHHHH
Q 019995           13 PSVGMVIVLLAQVSNMEVIKAAMSKGINKYVIIVYSDALSSLFFLFCSFLFHRSERPQLTFSILCSFFLLSVFG-CSSQI   91 (332)
Q Consensus        13 ~~l~li~~~~iwg~~~v~~K~~~~~~~~p~~~~~~R~~~a~l~ll~~~~~~~~~~~~~~~~~~~~~~~~~gl~g-~~~~~   91 (332)
                      +++.+++..++=+...++-|.++++ .+...... + ....+..     .  .     .+    ...+..|+.. .+.+.
T Consensus         3 ~~~~i~~sv~l~~~gQl~~K~g~~~-~g~~~~~~-~-~~~~~~~-----~--~-----~p----~~~i~lgl~~~~la~~   63 (129)
T PRK02971          3 GYLWGLASVLLASVAQLSLKWGMSR-LPLLSHAW-D-FIAALLA-----F--G-----LA----LRAVLLGLAGYALSML   63 (129)
T ss_pred             cHHHHHHHHHHHHHHHHHHHHHHhh-CCCccchh-H-HHHHHHH-----H--h-----cc----HHHHHHHHHHHHHHHH
Confidence            5667777777778899999999865 44333211 1 1110000     0  0     01    1246778887 89999


Q ss_pred             HHHHhhcccChhhHHHhhhhhHHHHHHHHHH--HHhhccccccccccchhhhhhheeccceeee
Q 019995           92 FSFVGIQYSSPTLSTAMLNLIPAFTFVLAII--FRLEKLNWENKSSQAKSLGTFASIGGAFVVT  153 (332)
Q Consensus        92 ~~~~gl~~t~a~~asii~~~~Pv~~~ila~l--~~~E~l~~~~~~~~~k~iGi~l~~~Gv~ll~  153 (332)
                      ++..+++..+.+.|.-+.+..|.++.+.++.  ++||+++.+      |++|+++.++|+.++.
T Consensus        64 ~w~~aL~~~~ls~Ayp~~sl~~~~v~~~~~~~~~~~E~ls~~------~~iGi~lIi~GV~lv~  121 (129)
T PRK02971         64 CWLKALRYLPLSRAYPLLSLSYALVYLAAMLLPWFNETFSLK------KTLGVACIMLGVWLIN  121 (129)
T ss_pred             HHHHHHHhCCcHHHHHHHHHHHHHHHHHHHHHHHcCCCCCHH------HHHHHHHHHHHHHHhc
Confidence            9999999999999999999999888888874  799999876      4999999999998865

>PF05653 Mg_trans_NIPA: Magnesium transporter NIPA; InterPro: IPR008521 This family consists of several eukaryotic proteins of unknown function

Probab=97.54  E-value=0.0039  Score=58.84  Aligned_cols=68  Identities=24%  Similarity=0.384  Sum_probs=57.5

Q ss_pred             HHHHH-HHHHHHHHHhhcccChhhHHHhhhhhHHHHHHHHHHHHhhccccccccccchhhhhhheeccceeeeec
Q 019995           82 LSVFG-CSSQIFSFVGIQYSSPTLSTAMLNLIPAFTFVLAIIFRLEKLNWENKSSQAKSLGTFASIGGAFVVTFY  155 (332)
Q Consensus        82 ~gl~g-~~~~~~~~~gl~~t~a~~asii~~~~Pv~~~ila~l~~~E~l~~~~~~~~~k~iGi~l~~~Gv~ll~~~  155 (332)
                      .|+.- ..+..+.+.++.+.|++..+=+....-++.++++..++|||+++++      +.|.++++.|..+++..
T Consensus        55 ~G~~~~~~g~~~~~~Al~~ap~slv~Plg~~~lv~~~~~a~~~l~e~~~~~~------~~G~~l~i~G~~liv~~  123 (300)
T PF05653_consen   55 IGLLLMVLGEILNFVALGFAPASLVAPLGALSLVFNAVLARFFLGEKLTRRD------IVGCALIILGSVLIVIF  123 (300)
T ss_pred             HHHHHHhcchHHHHHHHHhhhHHHHHHHHhhhhhhHHHHhHHHhcccchHhH------HhhHHHHHhhheeeEEe
Confidence            34443 5666788889999999999988999999999999999999998775      89999999999887644

>COG5006 rhtA Threonine/homoserine efflux transporter [Amino acid transport and metabolism]

Probab=97.41  E-value=0.0014  Score=59.30  Aligned_cols=130  Identities=13%  Similarity=0.033  Sum_probs=102.4

Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHHH-HHH
Q 019995           11 ALPSVGMVIVLLAQVSNMEVIKAAMSKGINKYVIIVYSDALSSLFFLFCSFLFHRSERPQLTFSILCSFFLLSVFG-CSS   89 (332)
Q Consensus        11 ~~~~l~li~~~~iwg~~~v~~K~~~~~~~~p~~~~~~R~~~a~l~ll~~~~~~~~~~~~~~~~~~~~~~~~~gl~g-~~~   89 (332)
                      .-+..+...+..+|+...+..|.+-+. .+-..-+..-+..++++.+|+-... .. ..-.+.+.+..-...|++. .++
T Consensus       147 p~Gv~~Al~AG~~Wa~YIv~G~r~g~~-~~g~~g~a~gm~vAaviv~Pig~~~-ag-~~l~~p~ll~laLgvavlSSalP  223 (292)
T COG5006         147 PVGVALALGAGACWALYIVLGQRAGRA-EHGTAGVAVGMLVAALIVLPIGAAQ-AG-PALFSPSLLPLALGVAVLSSALP  223 (292)
T ss_pred             HHHHHHHHHHhHHHHHHHHHcchhccc-CCCchHHHHHHHHHHHHHhhhhhhh-cc-hhhcChHHHHHHHHHHHHhcccc
Confidence            346667778899999999999988654 5667778888999999999986542 21 1123344455556788888 899


Q ss_pred             HHHHHHhhcccChhhHHHhhhhhHHHHHHHHHHHHhhccccccccccchhhhhhheeccc
Q 019995           90 QIFSFVGIQYSSPTLSTAMLNLIPAFTFVLAIIFRLEKLNWENKSSQAKSLGTFASIGGA  149 (332)
Q Consensus        90 ~~~~~~gl~~t~a~~asii~~~~Pv~~~ila~l~~~E~l~~~~~~~~~k~iGi~l~~~Gv  149 (332)
                      +.+-..+++..+...-+++.++-|.+.++.++++++|.++..|      |+|+.+.+.+.
T Consensus       224 YsLEmiAL~rlp~~~F~~LlSLePa~aAl~G~i~L~e~ls~~q------wlaI~~ViaAs  277 (292)
T COG5006         224 YSLEMIALRRLPARTFGTLLSLEPALAALSGLIFLGETLTLIQ------WLAIAAVIAAS  277 (292)
T ss_pred             hHHHHHHHhhCChhHHHHHHHhhHHHHHHHHHHHhcCCCCHHH------HHHHHHHHHHH
Confidence            9999999999999999999999999999999999999999876      55555544443

>KOG1580 consensus UDP-galactose transporter related protein [Carbohydrate transport and metabolism]

Probab=97.39  E-value=0.0014  Score=58.71  Aligned_cols=203  Identities=15%  Similarity=0.051  Sum_probs=139.2

Q ss_pred             HHHHHHHHHHHHHHHHHhhcccChhhHHHhhhhhHHHHHHHHHHHHhhccccccccccchhhhhhheeccceeeeecCCC
Q 019995           79 FFLLSVFGCSSQIFSFVGIQYSSPTLSTAMLNLIPAFTFVLAIIFRLEKLNWENKSSQAKSLGTFASIGGAFVVTFYKGP  158 (332)
Q Consensus        79 ~~~~gl~g~~~~~~~~~gl~~t~a~~asii~~~~Pv~~~ila~l~~~E~l~~~~~~~~~k~iGi~l~~~Gv~ll~~~~g~  158 (332)
                      ....++-.-+.+..-..+++|.+=-+.-+=-++-|+=+.+++.++.+++-.      ++|...+++-+.|+++.. ++.+
T Consensus        88 YaAcs~sYLlAMVssN~Alq~vpYPTqVlgKScKPIPVMilGVl~~~KsY~------w~kY~cVL~IV~GValFm-YK~~  160 (337)
T KOG1580|consen   88 YAACSASYLLAMVSSNQALQYVPYPTQVLGKSCKPIPVMILGVLFAHKSYH------WRKYCCVLMIVVGVALFM-YKEN  160 (337)
T ss_pred             HHHHHHHHHHHHHhccchhcccCCcHHHhcccCCCcceeeeehhhhccccc------HHHHHHHHHHHHHHHHhh-cccc
Confidence            345555556788888999999987777666778888888999999876654      456999999999998764 4422


Q ss_pred             CCcCCCCCCCCCCcccCCCCccchhHHHHHHHHHHHHHHHHHHHHHHHHhc-chhHHHHHHHHHHHHHHHHHHHHHHcCC
Q 019995          159 PLIGELSHSGSPRRLLLSPQLSWILGGFFLAAEAFMNSAWFILQALILRKF-AAVLIIMFYLFFFNTILSTAFALIVVSE  237 (332)
Q Consensus       159 ~~~~~~~~~~~~~~~~~~~~~~~~~G~~l~L~aa~~~A~~~vl~~~~~~~~-~~~~~~~~~~~~~g~i~l~~~~~~~~~~  237 (332)
                      ...             +..+..+..|+++++++-..=.+-...|.|+.+.+ ++...|+.+..+.+++.+-.--++.+..
T Consensus       161 Kv~-------------g~e~~t~g~GElLL~lSL~mDGlTg~~Qdrira~yq~~g~~MM~~~NlwStL~Lg~g~lfTGEl  227 (337)
T KOG1580|consen  161 KVG-------------GAEDKTFGFGELLLILSLAMDGLTGSIQDRIRASYQRTGTSMMFYTNLWSTLYLGAGLLFTGEL  227 (337)
T ss_pred             ccC-------------CCcccccchHHHHHHHHHHhcccchhHHHHHHHhhccCchhhHHHHHHHHHHHhhhhheehhhH
Confidence            111             11233456799999999888888888888875543 3456677777777777664433332221


Q ss_pred             --CCCcc-ccchhhHHHHHHHh--hHHHHHHHHHHhccc-h--hhhhhchHHHHHHHHHHHHhCCccccchhh
Q 019995          238 --PSDWK-LGLDIGLVAVLYSV--SSYWHWVSSWLVHMV-P--VENWTSLCINVQALGHCLLYCHGCRHCRRR  302 (332)
Q Consensus       238 --~~~~~-~~~~~~~~~l~~~g--t~i~~~l~~~~l~~~-~--~s~~~~l~Pv~a~il~~~~LgE~~~~~~~~  302 (332)
                        ...+. -++. .|+-+...|  +.+++++...-...- |  -|+....--.|+++.+.++++.+++.-+-.
T Consensus       228 weF~yF~~RhP~-~~~~l~l~ai~s~LGQ~fIF~tv~~FgPLtCSivTTTRKfFTil~SVllf~npls~rQwl  299 (337)
T KOG1580|consen  228 WEFFYFVQRHPY-VFWDLTLLAIASCLGQWFIFKTVEEFGPLTCSIVTTTRKFFTILISVLLFNNPLSGRQWL  299 (337)
T ss_pred             HHHHHHHHhccH-HHHHHHHHHHHHHhhhHHHHHHHHHhCCeeEEEEeehHHHHHHHHHHHHhcCcCcHHHHH
Confidence              00010 1111 233333333  788888888888777 8  777788888999999999999998864433

>PF06027 DUF914: Eukaryotic protein of unknown function (DUF914); InterPro: IPR009262 This family consists of several hypothetical proteins of unknown function

Probab=97.31  E-value=0.0027  Score=60.63  Aligned_cols=140  Identities=11%  Similarity=0.051  Sum_probs=105.6

Q ss_pred             cchhhHHHHHHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCH--HHHHHHHHHHHH
Q 019995            8 MRAALPSVGMVIVLLAQVSNMEVIKAAMSKGINKYVIIVYSDALSSLFFLFCSFLFHRSERPQLTF--SILCSFFLLSVF   85 (332)
Q Consensus         8 ~~~~~~~l~li~~~~iwg~~~v~~K~~~~~~~~p~~~~~~R~~~a~l~ll~~~~~~~~~~~~~~~~--~~~~~~~~~gl~   85 (332)
                      ..+.++-+.++.+++++|.+.+.-+...++ .|+..+.++=-+++.++..+.....+++...+.++  +.....+..++.
T Consensus       164 ~~~i~GDll~l~~a~lya~~nV~~E~~v~~-~~~~~~lg~~Glfg~ii~~iq~~ile~~~i~~~~w~~~~~~~~v~~~~~  242 (334)
T PF06027_consen  164 SNPILGDLLALLGAILYAVSNVLEEKLVKK-APRVEFLGMLGLFGFIISGIQLAILERSGIESIHWTSQVIGLLVGYALC  242 (334)
T ss_pred             CccchhHHHHHHHHHHHHHHHHHHHHhccc-CCHHHHHHHHHHHHHHHHHHHHHheehhhhhccCCChhhHHHHHHHHHH
Confidence            346778899999999999999999998865 79888888777888888887777667654433332  322222222222


Q ss_pred             HHHHHHHHHHhhcccChhhHHHhhhhhHHHHHHHHHHHHhhccccccccccchhhhhhheeccceeeee
Q 019995           86 GCSSQIFSFVGIQYSSPTLSTAMLNLIPAFTFVLAIIFRLEKLNWENKSSQAKSLGTFASIGGAFVVTF  154 (332)
Q Consensus        86 g~~~~~~~~~gl~~t~a~~asii~~~~Pv~~~ila~l~~~E~l~~~~~~~~~k~iGi~l~~~Gv~ll~~  154 (332)
                      .+..+.+.-..+++++|+...+=.-++.++..++..+++||++++.      ..+|.++.++|.++...
T Consensus       243 lf~~y~l~p~~l~~ssAt~~nLsLLTsd~~ali~~i~~f~~~~~~l------y~~af~lIiiG~vvy~~  305 (334)
T PF06027_consen  243 LFLFYSLVPIVLRMSSATFFNLSLLTSDFYALIIDIFFFGYKFSWL------YILAFALIIIGFVVYNL  305 (334)
T ss_pred             HHHHHHHHHHHHHhCccceeehHHHHhhHHHHHHHHHhcCccccHH------HHHHHHHHHHHhheEEc
Confidence            2555556667789999988877777889999999999999998764      48999999999987653

Some of the sequences in this family are annotated as putative membrane proteins.

>KOG1442 consensus GDP-fucose transporter [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]

Probab=97.19  E-value=0.0062  Score=55.88  Aligned_cols=230  Identities=14%  Similarity=0.075  Sum_probs=129.3

Q ss_pred             ChHHHHHHHHHHHHHHHHHHHHHhhcCC----CC--CCCHHHHHHHHHHHHHHHHHHHHHHHhhcccChhhHHHhhhhhH
Q 019995           40 NKYVIIVYSDALSSLFFLFCSFLFHRSE----RP--QLTFSILCSFFLLSVFGCSSQIFSFVGIQYSSPTLSTAMLNLIP  113 (332)
Q Consensus        40 ~p~~~~~~R~~~a~l~ll~~~~~~~~~~----~~--~~~~~~~~~~~~~gl~g~~~~~~~~~gl~~t~a~~asii~~~~P  113 (332)
                      .|..+..++++....+...+.....+-.    .+  +++.+....+..+.+...+...+-...++|.+.+---+=-++.-
T Consensus        60 ~plf~t~~qcLvt~~~c~~ls~ls~k~~~~ftfp~~~ldl~t~r~vlplsvVfi~mI~fnnlcL~yVgVaFYyvgRsLtt  139 (347)
T KOG1442|consen   60 APLFITWYQCLVTTSICLVLSSLSVKYPGLFTFPSLQLDLATARQVLPLSVVFILMISFNNLCLKYVGVAFYYVGRSLTT  139 (347)
T ss_pred             cHHHHHHHHHHHHHHHHHHHHHHHhhccceeccCcccccHHHHHhhcchhheeeeehhccceehhhcceEEEEeccchhh
Confidence            6778888898888777666554432211    12  22333333333444333333344556777777655444456778


Q ss_pred             HHHHHHHHHHHhhccccccccccchhhhhhheeccceeeeecCCCCCcCCCCCCCCCCcccCCCCccchhHHHHHHHHHH
Q 019995          114 AFTFVLAIIFRLEKLNWENKSSQAKSLGTFASIGGAFVVTFYKGPPLIGELSHSGSPRRLLLSPQLSWILGGFFLAAEAF  193 (332)
Q Consensus       114 v~~~ila~l~~~E~l~~~~~~~~~k~iGi~l~~~Gv~ll~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~G~~l~L~aa~  193 (332)
                      +|++++++.++|+|-+..       .    ++-+|++++.+.-|.+.             |+..+.-...|.++...|.+
T Consensus       140 vFtVlLtyvllkqkTs~~-------~----~~~C~lIi~GF~lGvdq-------------E~~~~~ls~~GvifGVlaSl  195 (347)
T KOG1442|consen  140 VFTVLLTYVLLKQKTSFF-------A----LGCCLLIILGFGLGVDQ-------------EGSTGTLSWIGVIFGVLASL  195 (347)
T ss_pred             hHHHHhHHhhcccccccc-------c----ceeehhheehheecccc-------------ccccCccchhhhHHHHHHHH
Confidence            999999999999986543       2    33344444333323221             11222223579999999999


Q ss_pred             HHHHHHHHHHHHHHhcc-hhHHHHHHHHHHHHHHHHHHHHHHcCCCC-Cc--cccchhhHHHHHHHhhHHHHHHHH---H
Q 019995          194 MNSAWFILQALILRKFA-AVLIIMFYLFFFNTILSTAFALIVVSEPS-DW--KLGLDIGLVAVLYSVSSYWHWVSS---W  266 (332)
Q Consensus       194 ~~A~~~vl~~~~~~~~~-~~~~~~~~~~~~g~i~l~~~~~~~~~~~~-~~--~~~~~~~~~~l~~~gt~i~~~l~~---~  266 (332)
                      +-|+..+..||...... .....+.+..+.+.++.+|.-.+ +++.. -+  +-.++...+.+..+++..+|.+.+   |
T Consensus       196 ~vAlnaiytkk~l~~v~~~iw~lt~ynnv~a~lLflpll~l-nge~~~v~~~~~l~a~~Fw~~mtLsglfgF~mgyvTg~  274 (347)
T KOG1442|consen  196 AVALNAIYTKKVLPPVGDCIWRLTAYNNVNALLLFLPLLIL-NGEFQAVVGFPHLPAIKFWILMTLSGLFGFAMGYVTGW  274 (347)
T ss_pred             HHHHHHHhhheecccccCeehhhHHHHHHHHHHHHHHHHHH-cchHHHHcCcccchHHHHHHHHHHHHHHHHHhhheeeE
Confidence            99999999888755443 33456777778888877776544 33211 11  112233344444555444444433   2


Q ss_pred             Hhccc-h------hhhhhchHHHHHHHHHHHHhCCcccc
Q 019995          267 LVHMV-P------VENWTSLCINVQALGHCLLYCHGCRH  298 (332)
Q Consensus       267 ~l~~~-~------~s~~~~l~Pv~a~il~~~~LgE~~~~  298 (332)
                      -+|.. |      .++=...    -.+++..+++|..+.
T Consensus       275 QIK~TSplThnISgTAka~a----QTvlAv~~y~E~ks~  309 (347)
T KOG1442|consen  275 QIKVTSPLTHNISGTAKAAA----QTVLAVAYYSETKSG  309 (347)
T ss_pred             EEEecccceeeecHhHHHHH----HHHHHHHHHHHHhhh
Confidence            23333 4      2222333    355667789997653

>PF06800 Sugar_transport: Sugar transport protein; InterPro: IPR010651 This is a family of bacterial sugar transporters approximately 300 residues long

Probab=96.94  E-value=0.0072  Score=55.86  Aligned_cols=132  Identities=10%  Similarity=0.020  Sum_probs=91.7

Q ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHHHHHH
Q 019995           10 AALPSVGMVIVLLAQVSNMEVIKAAMSKGINKYVIIVYSDALSSLFFLFCSFLFHRSERPQLTFSILCSFFLLSVFGCSS   89 (332)
Q Consensus        10 ~~~~~l~li~~~~iwg~~~v~~K~~~~~~~~p~~~~~~R~~~a~l~ll~~~~~~~~~~~~~~~~~~~~~~~~~gl~g~~~   89 (332)
                      ..|....++++.+-+.....+.|..   +.||.....=+..--.+.-..+.... ++.  ..+++. .+-++-|++....
T Consensus       136 ~~kgi~~Ll~stigy~~Y~~~~~~~---~~~~~~~~lPqaiGm~i~a~i~~~~~-~~~--~~~k~~-~~nil~G~~w~ig  208 (269)
T PF06800_consen  136 MKKGILALLISTIGYWIYSVIPKAF---HVSGWSAFLPQAIGMLIGAFIFNLFS-KKP--FFEKKS-WKNILTGLIWGIG  208 (269)
T ss_pred             hhhHHHHHHHHHHHHHHHHHHHHhc---CCChhHhHHHHHHHHHHHHHHHhhcc-ccc--ccccch-HHhhHHHHHHHHH
Confidence            4668889999999998888888863   37887766655322222211222211 211  112222 3346778888888


Q ss_pred             HHHHHHhhcccChhhHHHhhhhhHHHHHHHHHHHHhhccccccccccchhhhhhheeccce
Q 019995           90 QIFSFVGIQYSSPTLSTAMLNLIPAFTFVLAIIFRLEKLNWENKSSQAKSLGTFASIGGAF  150 (332)
Q Consensus        90 ~~~~~~gl~~t~a~~asii~~~~Pv~~~ila~l~~~E~l~~~~~~~~~k~iGi~l~~~Gv~  150 (332)
                      +.+++.+.+....+.+-.+.++.++...+-+.+++||+=++|++  ....+|+++.++|..
T Consensus       209 nl~~~is~~~~G~a~af~lSQ~~vvIStlgGI~il~E~Kt~ke~--~~~~~G~~Liv~G~i  267 (269)
T PF06800_consen  209 NLFYLISAQKNGVATAFTLSQLGVVISTLGGIFILKEKKTKKEM--IYTLIGLILIVIGAI  267 (269)
T ss_pred             HHHHHHhHHhccchhhhhHHhHHHHHHHhhhheEEEecCchhhH--HHHHHHHHHHHHhhh
Confidence            88899999999999999999999999999999999999776653  335677777777654

Members include glucose uptake proteins [], ribose transport proteins, and several putative and hypothetical membrane proteins probably involved in sugar transport across bacterial membranes.; GO: 0015144 carbohydrate transmembrane transporter activity, 0034219 carbohydrate transmembrane transport, 0016021 integral to membrane

>PRK02971 4-amino-4-deoxy-L-arabinose-phosphoundecaprenol flippase subunit ArnF; Provisional

Probab=96.89  E-value=0.0019  Score=53.29  Aligned_cols=118  Identities=14%  Similarity=0.084  Sum_probs=77.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHHHHcCCCCCccccchhhHHHHHHHhhHHHHHH
Q 019995          184 GGFFLAAEAFMNSAWFILQALILRKFAAVLIIMFYLFFFNTILSTAFALIVVSEPSDWKLGLDIGLVAVLYSVSSYWHWV  263 (332)
Q Consensus       184 G~~l~L~aa~~~A~~~vl~~~~~~~~~~~~~~~~~~~~~g~i~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~gt~i~~~l  263 (332)
                      |.++.+.+.++-+..-++-|+-.++.++ ...... .    . .... ...+  +        ..+..+...+.++++.+
T Consensus         3 ~~~~i~~sv~l~~~gQl~~K~g~~~~g~-~~~~~~-~----~-~~~~-~~~~--p--------~~~i~lgl~~~~la~~~   64 (129)
T PRK02971          3 GYLWGLASVLLASVAQLSLKWGMSRLPL-LSHAWD-F----I-AALL-AFGL--A--------LRAVLLGLAGYALSMLC   64 (129)
T ss_pred             cHHHHHHHHHHHHHHHHHHHHHHhhCCC-ccchhH-H----H-HHHH-HHhc--c--------HHHHHHHHHHHHHHHHH
Confidence            5677788888888888888887777642 221111 0    0 0001 0100  0        01122222227799999


Q ss_pred             HHHHhccch---hhhhhchHHHHHHHHHHH--HhCCccccchhh---hhhheeeeeeeccCCcc
Q 019995          264 SSWLVHMVP---VENWTSLCINVQALGHCL--LYCHGCRHCRRR---FLSWKVLLINFFSNDFR  319 (332)
Q Consensus       264 ~~~~l~~~~---~s~~~~l~Pv~a~il~~~--~LgE~~~~~~~~---~~~~~~~~~~~~~~~~~  319 (332)
                      |.+++++.|   +.++..+.++...+.++.  ++||+++..+-.   +++-||+++|..+++-|
T Consensus        65 w~~aL~~~~ls~Ayp~~sl~~~~v~~~~~~~~~~~E~ls~~~~iGi~lIi~GV~lv~~~~~~~~  128 (129)
T PRK02971         65 WLKALRYLPLSRAYPLLSLSYALVYLAAMLLPWFNETFSLKKTLGVACIMLGVWLINLPTTKAR  128 (129)
T ss_pred             HHHHHHhCCcHHHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHhccCCCCCC
Confidence            999999994   667777888888888885  899999986665   69999999998777655

>PF10639 UPF0546: Uncharacterised protein family UPF0546; InterPro: IPR018908 This family of proteins has no known function

Probab=96.69  E-value=0.0049  Score=49.49  Aligned_cols=110  Identities=15%  Similarity=0.111  Sum_probs=73.1

Q ss_pred             HHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHhh
Q 019995           18 VIVLLAQVSNMEVIKAAMSKGINKYVIIVYSDALSSLFFLFCSFLFHRSERPQLTFSILCSFFLLSVFGCSSQIFSFVGI   97 (332)
Q Consensus        18 i~~~~iwg~~~v~~K~~~~~~~~p~~~~~~R~~~a~l~ll~~~~~~~~~~~~~~~~~~~~~~~~~gl~g~~~~~~~~~gl   97 (332)
                      +++.++||.+.+++|.+.+. .++..-.. |..--...+                .+++.+.+... ++-.....|+..+
T Consensus         2 l~Vg~~WG~Tnpfik~g~~~-~~~~~~~~-~~~~~~~~L----------------l~n~~y~ipf~-lNq~GSv~f~~~L   62 (113)
T PF10639_consen    2 LLVGILWGCTNPFIKRGSSG-LEKVKASL-QLLQEIKFL----------------LLNPKYIIPFL-LNQSGSVLFFLLL   62 (113)
T ss_pred             eeehHHhcCchHHHHHHHhh-cCCccchH-HHHHHHHHH----------------HHhHHHHHHHH-HHHHHHHHHHHHH
Confidence            45788999999999998764 55544331 322222111                12233333222 2245667788899


Q ss_pred             cccChhhHHHhh-hhhHHHHHHHHHHHHhhccccccccccchhhhhhheeccceee
Q 019995           98 QYSSPTLSTAML-NLIPAFTFVLAIIFRLEKLNWENKSSQAKSLGTFASIGGAFVV  152 (332)
Q Consensus        98 ~~t~a~~asii~-~~~Pv~~~ila~l~~~E~l~~~~~~~~~k~iGi~l~~~Gv~ll  152 (332)
                      ..++-+.+.-+. +++=++|++.++++.+|..+++      .++|+.+.++|+.+.
T Consensus        63 ~~~dlSlavPi~Nsl~fvfT~l~g~~lge~~~~~~------~~~G~~Li~~Gv~Lc  112 (113)
T PF10639_consen   63 GSADLSLAVPIANSLAFVFTALTGWLLGEEVISRR------TWLGMALILAGVALC  112 (113)
T ss_pred             hcCCceeeehHHhHHHHHHHHHHHHHhcCcccchh------HHHHHHHHHcCeeee
Confidence            999999888875 6777888888877766655443      499999999998763

Many members are annotated as potential transmembrane proteins.

>PF08449 UAA: UAA transporter family; InterPro: IPR013657 This family includes transporters with a specificity for UDP-N-acetylglucosamine []

Probab=96.64  E-value=0.032  Score=52.51  Aligned_cols=133  Identities=21%  Similarity=0.262  Sum_probs=103.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHh-CCCChHHHHHHHHHHHHHHHHHHHHHhh-cCCCC-----CCCHHHHHHHHHHHHH
Q 019995           13 PSVGMVIVLLAQVSNMEVIKAAMS-KGINKYVIIVYSDALSSLFFLFCSFLFH-RSERP-----QLTFSILCSFFLLSVF   85 (332)
Q Consensus        13 ~~l~li~~~~iwg~~~v~~K~~~~-~~~~p~~~~~~R~~~a~l~ll~~~~~~~-~~~~~-----~~~~~~~~~~~~~gl~   85 (332)
                      ++..++++.++-|...+..+...+ ++.++....++-.+++.++.++...... ...+.     ....+.+..++...+.
T Consensus       155 G~~ll~~sl~~~a~~~~~qe~~~~~~~~~~~~~mfy~n~~~~~~~~~~~~~l~~~~~~~~~~f~~~~p~~~~~l~~~s~~  234 (303)
T PF08449_consen  155 GIILLLLSLLLDAFTGVYQEKLFKKYGKSPWELMFYTNLFSLPFLLILLFLLPTGEFRSAIRFISAHPSVLLYLLLFSLT  234 (303)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHHHHHHHhhHhhHHHHHHHHhHHHHHHHHHHHHH
Confidence            778888888888999999888774 4578899999999998888776655511 11110     1112344556667777


Q ss_pred             HHHHHHHHHHhhcccChhhHHHhhhhhHHHHHHHHHHHHhhccccccccccchhhhhhheecccee
Q 019995           86 GCSSQIFSFVGIQYSSPTLSTAMLNLIPAFTFVLAIIFRLEKLNWENKSSQAKSLGTFASIGGAFV  151 (332)
Q Consensus        86 g~~~~~~~~~gl~~t~a~~asii~~~~Pv~~~ila~l~~~E~l~~~~~~~~~k~iGi~l~~~Gv~l  151 (332)
                      ++..+.+.+.-.+..+|...+++..+--+++.+++..+++++++..+      |+|+++.+.|..+
T Consensus       235 ~~~g~~~i~~~~~~~~al~~t~v~t~Rk~~sillS~~~f~~~~~~~~------~~G~~lv~~g~~~  294 (303)
T PF08449_consen  235 GALGQFFIFYLIKKFSALTTTIVTTLRKFLSILLSVIIFGHPLSPLQ------WIGIVLVFAGIFL  294 (303)
T ss_pred             HHHHHHHHHHHHHhcCchhhhhHHHHHHHHHHHHHHHhcCCcCChHH------HHHHHHhHHHHHH
Confidence            77777777788899999999999999999999999999999998765      9999999999865

; GO: 0055085 transmembrane transport

>KOG2922 consensus Uncharacterized conserved protein [Function unknown]

Probab=96.58  E-value=0.11  Score=48.76  Aligned_cols=115  Identities=18%  Similarity=0.169  Sum_probs=78.7

Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHh-hcCCCCCCCHHHHHHHHHHHHHH-HH
Q 019995           11 ALPSVGMVIVLLAQVSNMEVIKAAMSKGINKYVIIVYSDALSSLFFLFCSFLF-HRSERPQLTFSILCSFFLLSVFG-CS   88 (332)
Q Consensus        11 ~~~~l~li~~~~iwg~~~v~~K~~~~~~~~p~~~~~~R~~~a~l~ll~~~~~~-~~~~~~~~~~~~~~~~~~~gl~g-~~   88 (332)
                      ..+.+..+.+.+..|+++.+-|.+...           ....        -.+ ..+..+.+  +++  .-..|++- .+
T Consensus        20 ~~G~~LaissS~~Ig~sfilkKkgl~r-----------~~~~--------~~ra~~gg~~yl--~~~--~Ww~G~ltm~v   76 (335)
T KOG2922|consen   20 IIGLVLAISSSIFIGSSFILKKKGLKR-----------AGAS--------GLRAGEGGYGYL--KEP--LWWAGMLTMIV   76 (335)
T ss_pred             eeeeeehhhccEEEeeehhhhHHHHHH-----------Hhhh--------cccccCCCcchh--hhH--HHHHHHHHHHH
Confidence            345555666666678888888876432           1110        001 01111222  221  12345555 56


Q ss_pred             HHHHHHHhhcccChhhHHHhhhhhHHHHHHHHHHHHhhccccccccccchhhhhhheeccceeeee
Q 019995           89 SQIFSFVGIQYSSPTLSTAMLNLIPAFTFVLAIIFRLEKLNWENKSSQAKSLGTFASIGGAFVVTF  154 (332)
Q Consensus        89 ~~~~~~~gl~~t~a~~asii~~~~Pv~~~ila~l~~~E~l~~~~~~~~~k~iGi~l~~~Gv~ll~~  154 (332)
                      +....|.++.+.|++..+-+.+++-+..++++..++|||++.+.      .+|..++++|-.+++.
T Consensus        77 Gei~NFaAYaFAPasLVtPLGAlsvi~saila~~~L~Ekl~~~g------~lGc~l~v~Gst~iV~  136 (335)
T KOG2922|consen   77 GEIANFAAYAFAPASLVTPLGALSVIISAILASFFLKEKLNLLG------ILGCVLCVVGSTTIVI  136 (335)
T ss_pred             HhHhhHHHHhhchHhhhccchhHHHHHHHHHHHHHHHHHHHHhh------hhheeEEecccEEEEE
Confidence            67777778889999999999999999999999999999999775      8999999999998873

>KOG4510 consensus Permease of the drug/metabolite transporter (DMT) superfamily [General function prediction only]

Probab=96.56  E-value=0.0028  Score=57.96  Aligned_cols=127  Identities=15%  Similarity=0.081  Sum_probs=91.2

Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHHHHHHH
Q 019995           11 ALPSVGMVIVLLAQVSNMEVIKAAMSKGINKYVIIVYSDALSSLFFLFCSFLFHRSERPQLTFSILCSFFLLSVFGCSSQ   90 (332)
Q Consensus        11 ~~~~l~li~~~~iwg~~~v~~K~~~~~~~~p~~~~~~R~~~a~l~ll~~~~~~~~~~~~~~~~~~~~~~~~~gl~g~~~~   90 (332)
                      .+.-...+.+++.-++.+++.|..-. ..+.+..+.+=..++.+.-+..+. ...+...+...+|+..++.+|++|+++|
T Consensus       190 ~~gt~aai~s~lf~asvyIilR~iGk-~~h~~msvsyf~~i~lV~s~I~~~-~ig~~~lP~cgkdr~l~~~lGvfgfigQ  267 (346)
T KOG4510|consen  190 IPGTVAAISSVLFGASVYIILRYIGK-NAHAIMSVSYFSLITLVVSLIGCA-SIGAVQLPHCGKDRWLFVNLGVFGFIGQ  267 (346)
T ss_pred             CCchHHHHHhHhhhhhHHHHHHHhhc-cccEEEEehHHHHHHHHHHHHHHh-hccceecCccccceEEEEEehhhhhHHH
Confidence            34566666677766777888886433 466666665555555544332221 1233334456678888889999999999


Q ss_pred             HHHHHhhcccChhhHHHhhhhhHHHHHHHHHHHHhhccccccccccchhhhhhhe
Q 019995           91 IFSFVGIQYSSPTLSTAMLNLIPAFTFVLAIIFRLEKLNWENKSSQAKSLGTFAS  145 (332)
Q Consensus        91 ~~~~~gl~~t~a~~asii~~~~Pv~~~ila~l~~~E~l~~~~~~~~~k~iGi~l~  145 (332)
                      ++...|+|---++-.++..++.-++..+.-.++++|..|+      +.|.|.++.
T Consensus       268 IllTm~lQiErAGpvaim~~~dvvfAf~wqv~ff~~~Pt~------ws~~Ga~~v  316 (346)
T KOG4510|consen  268 ILLTMGLQIERAGPVAIMTYTDVVFAFFWQVLFFGHWPTI------WSWVGAVMV  316 (346)
T ss_pred             HHHHHHhhhhccCCeehhhHHHHHHHHHHHHHHhcCCChH------HHhhceeee
Confidence            9999999999999999999999999999999999987654      446665543

>TIGR00803 nst UDP-galactose transporter

Probab=96.53  E-value=0.022  Score=51.02  Aligned_cols=121  Identities=12%  Similarity=-0.010  Sum_probs=69.3

Q ss_pred             cchhHHHHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHH-HHHHHHHHHHHHHHcC-C-CCCcc--ccchhhHHHHHH
Q 019995          180 SWILGGFFLAAEAFMNSAWFILQALILRKFAAVLIIMFYLF-FFNTILSTAFALIVVS-E-PSDWK--LGLDIGLVAVLY  254 (332)
Q Consensus       180 ~~~~G~~l~L~aa~~~A~~~vl~~~~~~~~~~~~~~~~~~~-~~g~i~l~~~~~~~~~-~-~~~~~--~~~~~~~~~l~~  254 (332)
                      +...|....+.+..+-+...+.+++..|+.+........+. +.+.+... ....... + ...+.  .......+.++.
T Consensus        82 ~~~~g~~~~l~a~~~~~~~~~y~e~~~k~~~~~~~~~~~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  160 (222)
T TIGR00803        82 NPVVGLSAVLSALLSSGFAGVYFEKILKDGDTMFWSRNLQLPLFGLFSTF-SVLLWSDGTLISNFGFFIGYPTAVWIVGL  160 (222)
T ss_pred             cHHHHHHHHHHHHHHHhhhHHHHHHcccCCCCchHHHHHHHHHHHHHHHH-HHHhhcccchhhccCcccCCchHHHHHHH
Confidence            34578888888888888888888887555422222212222 22222211 1111111 1 01111  011111222222


Q ss_pred             HhhHHHHHHHHHHhccc-h--hhhhhchHHHHHHHHHHHHhCCccccchhh
Q 019995          255 SVSSYWHWVSSWLVHMV-P--VENWTSLCINVQALGHCLLYCHGCRHCRRR  302 (332)
Q Consensus       255 ~gt~i~~~l~~~~l~~~-~--~s~~~~l~Pv~a~il~~~~LgE~~~~~~~~  302 (332)
                      . .+++..+..+.+++. +  .+....++++++.+++++++||+++..+-.
T Consensus       161 ~-~a~~~~~v~~vlk~~~~~~~~~~~~~~~~~s~lls~~~f~~~ls~~~~~  210 (222)
T TIGR00803       161 L-NVGGGLCIGGVVRYADNTTKSFVTALSIILSTLASVRLFDAKISSTFYL  210 (222)
T ss_pred             H-HHhcCceeeehhHHhHHHHHHHHHHHHHHHHHHHHHHHhcCCccHHHHH
Confidence            1 456666678888888 6  888888999999999999999999876544

NSTs generally appear to function by antiport mechanisms, exchanging a nucleotide-sugar for a nucleotide. Thus, CMP-sialic acid is exchanged for CMP; GDP-mannose is preferentially exchanged for GMP, and UDP-galactose and UDP-N-acetylglucosamine are exchanged for UMP (or possibly UDP). Other nucleotide sugars (e.g., GDP-fucose, UDP-xylose, UDP-glucose, UDP-N-acetylgalactosamine, etc.) may also be transported in exchange for various nucleotides, but their transporters have not been molecularly characterized. Each compound appears to be translocated by its own transport protein. Transport allows the compound, synthesized in the cytoplasm, to be exported to the lumen of the Golgi apparatus or the endoplasmic reticulum where it is used for the synthesis of glycoproteins and glycolipids.

>PF13536 EmrE: Multidrug resistance efflux transporter

Probab=96.45  E-value=0.0073  Score=48.31  Aligned_cols=57  Identities=18%  Similarity=0.076  Sum_probs=45.3

Q ss_pred             hHHHHHHHHHHhccc-h-hhhhhchHHHHHHHHHHHHhCCccccchhh---hhhheeeeeee
Q 019995          257 SSYWHWVSSWLVHMV-P-VENWTSLCINVQALGHCLLYCHGCRHCRRR---FLSWKVLLINF  313 (332)
Q Consensus       257 t~i~~~l~~~~l~~~-~-~s~~~~l~Pv~a~il~~~~LgE~~~~~~~~---~~~~~~~~~~~  313 (332)
                      ...++.++.++.++. + +++...+.|++++++|+++++|+++..+-.   +..-||++++.
T Consensus        45 ~~~~~~~~~~a~~~~~~~v~~i~~~~pi~~~ll~~~~~~er~~~~~~~a~~l~~~Gv~li~~  106 (113)
T PF13536_consen   45 FGVAYLLFFYALSYAPALVAAIFSLSPIFTALLSWLFFKERLSPRRWLAILLILIGVILIAW  106 (113)
T ss_pred             HHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhh
Confidence            347899999999999 5 788888999999999999999988865433   35556665543

>PRK10650 multidrug efflux system protein MdtI; Provisional

Probab=96.28  E-value=0.026  Score=45.14  Aligned_cols=60  Identities=13%  Similarity=0.040  Sum_probs=51.3

Q ss_pred             HHHHHHHHHhhcccChhhHHH-hhhhhHHHHHHHHHHHHhhccccccccccchhhhhhheeccceee
Q 019995           87 CSSQIFSFVGIQYSSPTLSTA-MLNLIPAFTFVLAIIFRLEKLNWENKSSQAKSLGTFASIGGAFVV  152 (332)
Q Consensus        87 ~~~~~~~~~gl~~t~a~~asi-i~~~~Pv~~~ila~l~~~E~l~~~~~~~~~k~iGi~l~~~Gv~ll  152 (332)
                      ...+++...++++.|.+.|=. .....-+.+++++.+++||++++.      |++|+.+-+.|+..+
T Consensus        46 ~~sf~~Ls~al~~lpvgvAYAvW~GiG~v~~~~ig~~~f~e~~~~~------~~~gi~lIi~GVi~l  106 (109)
T PRK10650         46 LAAFSALSQAVKGIDLSVAYALWGGFGIAATLAAGWILFGQRLNRK------GWIGLVLLLAGMVMI  106 (109)
T ss_pred             HHHHHHHHHHHhhCchHHHHHHHHHHHHHHHHHHHHHHcCCCCCHH------HHHHHHHHHHHHHHh
Confidence            788899999999999998844 456778889999999999999876      499999999998654

>COG4975 GlcU Putative glucose uptake permease [Carbohydrate transport and metabolism]

Probab=96.13  E-value=0.00028  Score=63.57  Aligned_cols=268  Identities=12%  Similarity=0.046  Sum_probs=152.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHHHHHHHHH
Q 019995           13 PSVGMVIVLLAQVSNMEVIKAAMSKGINKYVIIVYSDALSSLFFLFCSFLFHRSERPQLTFSILCSFFLLSVFGCSSQIF   92 (332)
Q Consensus        13 ~~l~li~~~~iwg~~~v~~K~~~~~~~~p~~~~~~R~~~a~l~ll~~~~~~~~~~~~~~~~~~~~~~~~~gl~g~~~~~~   92 (332)
                      .++..++-++.||+...+...-  . -+|.+=..---+-| ++.....++.   .+|..+.+.+..-++-|++....|..
T Consensus         3 ~~liaL~P~l~WGsip~v~~k~--G-G~p~qQ~lGtT~GA-Lifaiiv~~~---~~p~~T~~~~iv~~isG~~Ws~GQ~~   75 (288)
T COG4975           3 DLLIALLPALGWGSIPLVANKF--G-GKPYQQTLGTTLGA-LIFAIIVFLF---VSPELTLTIFIVGFISGAFWSFGQAN   75 (288)
T ss_pred             hHHHHHHHHHHhcccceeeeec--C-CChhHhhhhccHHH-HHHHHHHhee---ecCccchhhHHHHHHhhhHhhhhhhh
Confidence            4567778899999998875542  2 24443332222223 3222222222   23566777776667777777899999


Q ss_pred             HHHhhcccChhhHHHhh-hhhHHHHHHHHHHHHhhccccccccccchhhhhhheeccceeeeecCCCCCcCCCCCCCCCC
Q 019995           93 SFVGIQYSSPTLSTAML-NLIPAFTFVLAIIFRLEKLNWENKSSQAKSLGTFASIGGAFVVTFYKGPPLIGELSHSGSPR  171 (332)
Q Consensus        93 ~~~gl~~t~a~~asii~-~~~Pv~~~ila~l~~~E~l~~~~~~~~~k~iGi~l~~~Gv~ll~~~~g~~~~~~~~~~~~~~  171 (332)
                      .+.++++.+.++|-=+. .++=+-+.+.+.++++|.-+.-+.  ..-.+++++-+.|+.+-+.. . +.       |  +
T Consensus        76 Qfka~~~iGVSkamPiStG~QLVg~sL~gV~~f~EW~t~~~~--IlG~iAliliviG~~lTs~~-~-~~-------n--k  142 (288)
T COG4975          76 QFKAIQLIGVSKAMPISTGMQLVGTSLFGVFVFHEWTTPTQI--ILGFIALILIVIGIYLTSKQ-D-RN-------N--K  142 (288)
T ss_pred             hhhheeeeeeeccccccchhhHhhceeeeEEEEeccCcchhH--HHHHHHHHHHHHhheEeeee-c-cc-------c--c
Confidence            99999999999886664 466677788888999998654431  11233455667777664421 1 10       0  0


Q ss_pred             cccCCCCccchhHHHHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHHHHcCCCCCccccchhhHHH
Q 019995          172 RLLLSPQLSWILGGFFLAAEAFMNSAWFILQALILRKFAAVLIIMFYLFFFNTILSTAFALIVVSEPSDWKLGLDIGLVA  251 (332)
Q Consensus       172 ~~~~~~~~~~~~G~~l~L~aa~~~A~~~vl~~~~~~~~~~~~~~~~~~~~~g~i~l~~~~~~~~~~~~~~~~~~~~~~~~  251 (332)
                        +.+...+.-.|...++.+.+.|-.|.++.+..  +. |..+...-|. +|.+.....--....+...-...+......
T Consensus       143 --~~~~~~n~kkgi~~L~iSt~GYv~yvvl~~~f--~v-~g~saiLPqA-iGMv~~ali~~~~~~~~~~~K~t~~nii~G  216 (288)
T COG4975         143 --EEENPSNLKKGIVILLISTLGYVGYVVLFQLF--DV-DGLSAILPQA-IGMVIGALILGFFKMEKRFNKYTWLNIIPG  216 (288)
T ss_pred             --cccChHhhhhheeeeeeeccceeeeEeeeccc--cc-cchhhhhHHH-HHHHHHHHHHhhcccccchHHHHHHHHhhH
Confidence              11122334678888899999999999886544  23 3444444443 444444333222221111001111111112


Q ss_pred             HHHHhhHHHHHHHHHHhccc-hhhhh--hchHHHHHHHHHHHHhCCccccchhhhhhheee
Q 019995          252 VLYSVSSYWHWVSSWLVHMV-PVENW--TSLCINVQALGHCLLYCHGCRHCRRRFLSWKVL  309 (332)
Q Consensus       252 l~~~gt~i~~~l~~~~l~~~-~~s~~--~~l~Pv~a~il~~~~LgE~~~~~~~~~~~~~~~  309 (332)
                      +.   =+++...+..+.++. -+..|  +=+.-+++.+-|.++|+|+=+--.-+.++-|++
T Consensus       217 ~~---Wa~GNl~ml~a~~~~GvAt~FSlSQlgViisTiGGIl~L~ekKtkkEm~~v~iGii  274 (288)
T COG4975         217 LI---WAIGNLFMLLAAQKVGVATSFSLSQLGVIISTIGGILFLGEKKTKKEMVYVIIGII  274 (288)
T ss_pred             HH---HHhhHHHHHHhhhhhceeeeeeHhhheeeeeecceEEEEeccCchhhhhhhhhhHH
Confidence            22   235555556666666 23333  335678889999999999977655444444433

>COG5070 VRG4 Nucleotide-sugar transporter [Carbohydrate transport and metabolism / Posttranslational modification, protein turnover, chaperones / Intracellular trafficking and secretion]

Probab=96.03  E-value=0.059  Score=48.24  Aligned_cols=231  Identities=14%  Similarity=0.122  Sum_probs=141.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHhhcccChhhHHHhhhhhHHHHHHHHH
Q 019995           42 YVIIVYSDALSSLFFLFCSFLFHRSERPQLTFSILCSFFLLSVFGCSSQIFSFVGIQYSSPTLSTAMLNLIPAFTFVLAI  121 (332)
Q Consensus        42 ~~~~~~R~~~a~l~ll~~~~~~~~~~~~~~~~~~~~~~~~~gl~g~~~~~~~~~gl~~t~a~~asii~~~~Pv~~~ila~  121 (332)
                      +.+.+.+.+.+.+-+...-+.+.-    +.+.++.+..+...++-....+.--.+++|.+...-++.-+++-+.++..-.
T Consensus        38 flll~vQSlvcvv~l~iLk~l~~~----~fR~t~aK~WfpiSfLLv~MIyt~SKsLqyL~vpiYTiFKNltII~iAygEv  113 (309)
T COG5070          38 FLLLAVQSLVCVVGLLILKFLRLV----EFRLTKAKKWFPISFLLVVMIYTSSKSLQYLAVPIYTIFKNLTIILIAYGEV  113 (309)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHhHh----heehhhhhhhcCHHHHHHHHHHhcccceeeeeeeHHHHhccceeehhHhhHH
Confidence            456677777776665543222111    2223344445566666555555666789999999999999999888888888


Q ss_pred             HHHhhccccccccccchhhhhhheeccceeeeecCCCCCcCCCCCCCCCCcccCCCCccchhHHHHHHHHHHHHHHHHHH
Q 019995          122 IFRLEKLNWENKSSQAKSLGTFASIGGAFVVTFYKGPPLIGELSHSGSPRRLLLSPQLSWILGGFFLAAEAFMNSAWFIL  201 (332)
Q Consensus       122 l~~~E~l~~~~~~~~~k~iGi~l~~~Gv~ll~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~G~~l~L~aa~~~A~~~vl  201 (332)
                      ++++.|++.-.      ...-++.++--..-.   +.|.      +     +..........|-+++...+++-|.|...
T Consensus       114 l~Fgg~vtsl~------l~SFilMvlSS~va~---w~D~------q-----~~~~~~~~lN~GY~Wm~~NclssaafVL~  173 (309)
T COG5070         114 LFFGGRVTSLE------LLSFILMVLSSVVAT---WGDQ------Q-----ASAFKAQILNPGYLWMFTNCLSSAAFVLI  173 (309)
T ss_pred             HHhcCccchhh------HHHHHHHHHHHHHhc---cchh------h-----HHHHHhcccCCceEEEehhhHhHHHHHHH
Confidence            88888876432      333333333322211   1110      0     00000112346888899999999999888


Q ss_pred             HHHHH--HhcchhHHHHHHHHHHHHHHHHHHHHHHcCC-CCCccc-cchhhHHHHHHHh---hHHHHHHHHHHhccc-h-
Q 019995          202 QALIL--RKFAAVLIIMFYLFFFNTILSTAFALIVVSE-PSDWKL-GLDIGLVAVLYSV---SSYWHWVSSWLVHMV-P-  272 (332)
Q Consensus       202 ~~~~~--~~~~~~~~~~~~~~~~g~i~l~~~~~~~~~~-~~~~~~-~~~~~~~~l~~~g---t~i~~~l~~~~l~~~-~-  272 (332)
                      .||..  .+..| ..-++|..+.+...++.++..+|+. +....- .....+.++...|   -+++ +.-.|+.+.. + 
T Consensus       174 mrkri~ltNf~d-~dtmfYnNllslPiL~~~s~~~edws~~n~annl~~d~l~am~ISgl~svgiS-y~saWcvrVtSST  251 (309)
T COG5070         174 MRKRIKLTNFKD-FDTMFYNNLLSLPILLSFSFLFEDWSPGNLANNLSVDSLMAMFISGLCSVGIS-YCSAWCVRVTSST  251 (309)
T ss_pred             HHHhhcccccch-hhHHHHhhhHHHHHHHHHHHHhccCCcchhhcCCChHHHHHHHHHHHHHhhhh-hccceeEeehhhh
Confidence            77764  23333 3346899999999999998877652 111100 0111233455555   2233 3446788777 4 


Q ss_pred             -hhhhhchHHHHHHHHHHHHhCCcccc
Q 019995          273 -VENWTSLCINVQALGHCLLYCHGCRH  298 (332)
Q Consensus       273 -~s~~~~l~Pv~a~il~~~~LgE~~~~  298 (332)
                       -++...+.-.-.++.|.+++||+...
T Consensus       252 tySMvGALNKlp~alaGlvffdap~nf  278 (309)
T COG5070         252 TYSMVGALNKLPIALAGLVFFDAPVNF  278 (309)
T ss_pred             HHHHHHHhhhChHHHhhhhhcCCchhH
Confidence             67777777778899999999998765

>PRK09541 emrE multidrug efflux protein; Reviewed

Probab=96.01  E-value=0.028  Score=45.04  Aligned_cols=60  Identities=17%  Similarity=0.228  Sum_probs=50.9

Q ss_pred             hHHHHHHHHHHhccch----hhhhhchHHHHHHHHHHHHhCCccccchhh---hhhheeeeeeeccC
Q 019995          257 SSYWHWVSSWLVHMVP----VENWTSLCINVQALGHCLLYCHGCRHCRRR---FLSWKVLLINFFSN  316 (332)
Q Consensus       257 t~i~~~l~~~~l~~~~----~s~~~~l~Pv~a~il~~~~LgE~~~~~~~~---~~~~~~~~~~~~~~  316 (332)
                      -++++.++..++++.|    -++..-+.-+..+++|++++||++++.+-.   +++-||++.|+.++
T Consensus        40 ~~~sf~~l~~al~~ipl~iAYavw~GlG~v~~~l~g~~~f~e~~~~~~~~gi~lIi~GVi~l~l~~~  106 (110)
T PRK09541         40 YCASFWLLAQTLAYIPTGIAYAIWSGVGIVLISLLSWGFFGQRLDLPAIIGMMLICAGVLVINLLSR  106 (110)
T ss_pred             HHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhcCCC
Confidence            4588888889998886    456666788889999999999999998877   58999999998775

>PRK15051 4-amino-4-deoxy-L-arabinose-phosphoundecaprenol flippase subunit ArnE; Provisional

Probab=95.90  E-value=0.027  Score=45.09  Aligned_cols=54  Identities=13%  Similarity=0.034  Sum_probs=44.4

Q ss_pred             hHHHHHHHHHHhccch---hhhhhchHHHHHHHHHHHHhCCccccchhh---hhhheeee
Q 019995          257 SSYWHWVSSWLVHMVP---VENWTSLCINVQALGHCLLYCHGCRHCRRR---FLSWKVLL  310 (332)
Q Consensus       257 t~i~~~l~~~~l~~~~---~s~~~~l~Pv~a~il~~~~LgE~~~~~~~~---~~~~~~~~  310 (332)
                      .++++.++.+++++.|   +.+...+.|+.++++|++++||+++..+-.   +++.||++
T Consensus        47 ~~l~~~~~~~al~~iplg~Ay~~~~l~~v~~~~~~~l~f~E~ls~~~~~Gi~lii~Gv~~  106 (111)
T PRK15051         47 LGLAMVLWLLVLQNVPVGIAYPMLSLNFVWVTLAAVKLWHEPVSPRHWCGVAFIIGGIVI  106 (111)
T ss_pred             HHHHHHHHHHHHhhCChHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHH
Confidence            5678899999999995   556666999999999999999999987776   46666653

>COG2962 RarD Predicted permeases [General function prediction only]

Probab=95.75  E-value=0.19  Score=46.70  Aligned_cols=122  Identities=11%  Similarity=0.007  Sum_probs=85.9

Q ss_pred             HHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHhhcCCC--CCCCHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 019995           21 LLAQVSNMEVIKAAMSKGINKYVIIVYSDALSSLFFLFCSFLFHRSER--PQLTFSILCSFFLLSVFGCSSQIFSFVGIQ   98 (332)
Q Consensus        21 ~~iwg~~~v~~K~~~~~~~~p~~~~~~R~~~a~l~ll~~~~~~~~~~~--~~~~~~~~~~~~~~gl~g~~~~~~~~~gl~   98 (332)
                      ++.||..+.+=|..   ++|+.+=...-.+.-.+.-+.+.....-...  -.-+.+.+..++..|...+++..++..|-+
T Consensus       157 a~sf~~Ygl~RK~~---~v~a~~g~~lE~l~l~p~al~yl~~l~~~~~~~~~~~~~~~~LLv~aG~vTavpL~lf~~aa~  233 (293)
T COG2962         157 ALSFGLYGLLRKKL---KVDALTGLTLETLLLLPVALIYLLFLADSGQFLQQNANSLWLLLVLAGLVTAVPLLLFAAAAK  233 (293)
T ss_pred             HHHHHHHHHHHHhc---CCchHHhHHHHHHHHhHHHHHHHHHHhcCchhhhcCCchHHHHHHHhhHHHHHHHHHHHHHHh
Confidence            44566666666642   3677766666665555544443333221110  112456677888899999999999999999


Q ss_pred             ccChhhHHHhhhhhHHHHHHHHHHHHhhccccccccccchhhhhhheecccee
Q 019995           99 YSSPTLSTAMLNLIPAFTFVLAIIFRLEKLNWENKSSQAKSLGTFASIGGAFV  151 (332)
Q Consensus        99 ~t~a~~asii~~~~Pv~~~ila~l~~~E~l~~~~~~~~~k~iGi~l~~~Gv~l  151 (332)
                      ..+-+.-++++|..|.+..+++.++++|+++..|      .+.-+.--+|+++
T Consensus       234 ~lpls~~G~lqYi~Ptl~fllav~i~~E~~~~~~------~~~F~~IW~aL~l  280 (293)
T COG2962         234 RLPLSTLGFLQYIEPTLMFLLAVLIFGEPFDSDQ------LVTFAFIWLALAL  280 (293)
T ss_pred             cCCHHHHHHHHHHHHHHHHHHHHHHcCCCCCHHH------HHHHHHHHHHHHH
Confidence            9999999999999999999999999999998765      5555554455444

>PRK10452 multidrug efflux system protein MdtJ; Provisional

Probab=95.66  E-value=0.016  Score=47.18  Aligned_cols=65  Identities=15%  Similarity=0.160  Sum_probs=55.2

Q ss_pred             HHHH-HHHHHHHHHhhcccChhhHHHh-hhhhHHHHHHHHHHHHhhccccccccccchhhhhhheeccceeee
Q 019995           83 SVFG-CSSQIFSFVGIQYSSPTLSTAM-LNLIPAFTFVLAIIFRLEKLNWENKSSQAKSLGTFASIGGAFVVT  153 (332)
Q Consensus        83 gl~g-~~~~~~~~~gl~~t~a~~asii-~~~~Pv~~~ila~l~~~E~l~~~~~~~~~k~iGi~l~~~Gv~ll~  153 (332)
                      .+.. ...++++..++++.|.+.|=.+ ....-+.+++++.++++|++++.      |++|+.+-++|+..+-
T Consensus        36 ~i~~~~~sf~~ls~al~~lplsiAYavw~GiG~v~~~~ig~~~f~E~~s~~------~~~gi~lIi~GVi~l~  102 (120)
T PRK10452         36 MLVMISLSYIFLSFAVKKIALGVAYALWEGIGILFITLFSVLLFDESLSLM------KIAGLTTLVAGIVLIK  102 (120)
T ss_pred             HHHHHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHHHHhCCCCCHH------HHHHHHHHHHHHHHhh
Confidence            3444 7889999999999999998555 46788899999999999999876      5999999999998764

>COG2076 EmrE Membrane transporters of cations and cationic drugs [Inorganic ion transport and metabolism]

Probab=95.63  E-value=0.014  Score=46.13  Aligned_cols=63  Identities=14%  Similarity=0.094  Sum_probs=53.8

Q ss_pred             HHH-HHHHHHHHHhhcccChhhH-HHhhhhhHHHHHHHHHHHHhhccccccccccchhhhhhheeccceee
Q 019995           84 VFG-CSSQIFSFVGIQYSSPTLS-TAMLNLIPAFTFVLAIIFRLEKLNWENKSSQAKSLGTFASIGGAFVV  152 (332)
Q Consensus        84 l~g-~~~~~~~~~gl~~t~a~~a-sii~~~~Pv~~~ila~l~~~E~l~~~~~~~~~k~iGi~l~~~Gv~ll  152 (332)
                      +.+ ...+.+...++++.|.+.| ++....--+.+++.++++++|+++..      |++|+.+-++|++.+
T Consensus        37 ~v~~~~sf~~Ls~alk~ipvgvAYAiW~GiG~v~~~l~g~~~f~E~l~~~------~~~gl~LiiaGvi~L  101 (106)
T COG2076          37 IVGYGLSFYLLSLALKTIPLGVAYAIWTGIGIVGTALVGVLLFGESLSLI------KLLGLALILAGVIGL  101 (106)
T ss_pred             HHHHHHHHHHHHHHHhhCchHHHHHHHHHHHHHHHHHHHHHhcCCcCCHH------HHHHHHHHHHHHHHh
Confidence            444 7889999999999999998 45567888999999999999999876      599999999998764

>COG2076 EmrE Membrane transporters of cations and cationic drugs [Inorganic ion transport and metabolism]

Probab=95.63  E-value=0.04  Score=43.65  Aligned_cols=60  Identities=18%  Similarity=0.191  Sum_probs=52.1

Q ss_pred             hHHHHHHHHHHhccch----hhhhhchHHHHHHHHHHHHhCCccccchhh---hhhheeeeeeeccC
Q 019995          257 SSYWHWVSSWLVHMVP----VENWTSLCINVQALGHCLLYCHGCRHCRRR---FLSWKVLLINFFSN  316 (332)
Q Consensus       257 t~i~~~l~~~~l~~~~----~s~~~~l~Pv~a~il~~~~LgE~~~~~~~~---~~~~~~~~~~~~~~  316 (332)
                      -.++|.+...++|+.|    -++++-+..+-+++.|++++||+.+..+..   .++-||++.|+.++
T Consensus        40 ~~~sf~~Ls~alk~ipvgvAYAiW~GiG~v~~~l~g~~~f~E~l~~~~~~gl~LiiaGvi~Lk~~s~  106 (106)
T COG2076          40 YGLSFYLLSLALKTIPLGVAYAIWTGIGIVGTALVGVLLFGESLSLIKLLGLALILAGVIGLKLGSR  106 (106)
T ss_pred             HHHHHHHHHHHHhhCchHHHHHHHHHHHHHHHHHHHHHhcCCcCCHHHHHHHHHHHHHHHHhhhcCC
Confidence            5588999999999996    567888889999999999999999998877   58899999998764

>KOG1582 consensus UDP-galactose transporter related protein [Carbohydrate transport and metabolism]

Probab=95.51  E-value=0.11  Score=47.83  Aligned_cols=270  Identities=12%  Similarity=0.112  Sum_probs=148.4

Q ss_pred             HHHHHHHHHHHHHHHHHhCCCChH--HHHHHHHHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHh
Q 019995           19 IVLLAQVSNMEVIKAAMSKGINKY--VIIVYSDALSSLFFLFCSFLFHRSERPQLTFSILCSFFLLSVFGCSSQIFSFVG   96 (332)
Q Consensus        19 ~~~~iwg~~~v~~K~~~~~~~~p~--~~~~~R~~~a~l~ll~~~~~~~~~~~~~~~~~~~~~~~~~gl~g~~~~~~~~~g   96 (332)
                      +..+.+|.....+=-.  .++.|+  .++..+++.-+.+-+.-....+. +++..++|.   ...++.+-.+.+.+-.-+
T Consensus        53 f~Yl~yGy~qElif~~--~gfkp~GWylTlvQf~~Ysg~glie~~~~~~-k~r~iP~rt---Y~~la~~t~gtmGLsn~S  126 (367)
T KOG1582|consen   53 FLYLVYGYLQELIFNV--EGFKPFGWYLTLVQFLVYSGFGLIELQLIQT-KRRVIPWRT---YVILAFLTVGTMGLSNGS  126 (367)
T ss_pred             HHHHHHHHHHHHHhcc--ccCcccchHHHHHHHHHHHhhhheEEEeecc-cceecchhH---hhhhHhhhhhccccCcCc
Confidence            3444455554443321  246654  67888888776654433222222 233445543   334443333444444444


Q ss_pred             hcccChhhHHHhhhhhHHHHHH-HHHHHHhhccccccccccchhhhhhheeccceeeeecCCCCCcCCCCCCCCCCcccC
Q 019995           97 IQYSSPTLSTAMLNLIPAFTFV-LAIIFRLEKLNWENKSSQAKSLGTFASIGGAFVVTFYKGPPLIGELSHSGSPRRLLL  175 (332)
Q Consensus        97 l~~t~a~~asii~~~~Pv~~~i-la~l~~~E~l~~~~~~~~~k~iGi~l~~~Gv~ll~~~~g~~~~~~~~~~~~~~~~~~  175 (332)
                      +.|.+=- +.++.-+.-+.-++ .+.++-+.|      +.....+...+-.+|++...+-++.                -
T Consensus       127 lgYLNYP-tQviFKccKliPVmiggifIqGkR------Y~v~d~~aA~lm~lGli~FTLADs~----------------~  183 (367)
T KOG1582|consen  127 LGYLNYP-TQVIFKCCKLIPVMIGGIFIQGKR------YGVHDYIAAMLMSLGLIWFTLADSQ----------------T  183 (367)
T ss_pred             cccccCc-HHHHHHhhhhhhhhheeeeecccc------ccHHHHHHHHHHHHHHHhhhhcccc----------------c
Confidence            4444322 33444333333233 334444433      5566688888888888664422110                0


Q ss_pred             CCCccchhHHHHHHHHHHHHHHHHHHHHHHHHhcc-hhHHHHHHHHHHHHHHHHHHHHHHcCCCCCccc---cchhhHHH
Q 019995          176 SPQLSWILGGFFLAAEAFMNSAWFILQALILRKFA-AVLIIMFYLFFFNTILSTAFALIVVSEPSDWKL---GLDIGLVA  251 (332)
Q Consensus       176 ~~~~~~~~G~~l~L~aa~~~A~~~vl~~~~~~~~~-~~~~~~~~~~~~g~i~l~~~~~~~~~~~~~~~~---~~~~~~~~  251 (332)
                      +... ...|+.+.-+|-++=|.-.-+|.|..+..+ +...+.+++..+|.++++..-....+-.++|+.   ++......
T Consensus       184 sPNF-~~~Gv~mIsgALl~DA~iGNvQEk~m~~~~~ss~EmvfySy~iG~vflf~~mvlTge~f~a~~fcaehp~~tyGy  262 (367)
T KOG1582|consen  184 SPNF-NLIGVMMISGALLADAVIGNVQEKAMKMNPASSSEMVFYSYGIGFVFLFAPMVLTGELFSAWTFCAEHPVRTYGY  262 (367)
T ss_pred             CCCc-ceeeHHHHHHHHHHHHHhhHHHHHHHhhCCCCcceEEEeeecccHHHHHHHHHhcccchhhhHHHHhCcHhHHHH
Confidence            1112 257998888888888888888999877765 345578888899999887765544443445542   11101111


Q ss_pred             HHHHhhHHHHHHHHHHhcc---c-h--hhhhhchHHHHHHHHHHHHhCCccccchhh---hhhheeeeeeeccCCccc
Q 019995          252 VLYSVSSYWHWVSSWLVHM---V-P--VENWTSLCINVQALGHCLLYCHGCRHCRRR---FLSWKVLLINFFSNDFRF  320 (332)
Q Consensus       252 l~~~gt~i~~~l~~~~l~~---~-~--~s~~~~l~Pv~a~il~~~~LgE~~~~~~~~---~~~~~~~~~~~~~~~~~~  320 (332)
                      ..+. +..+|.-+...+..   - +  ++.....--.++.+++++++..|++..+.-   .+.-| +.-|+.+|||.-
T Consensus       263 ~~~~-s~~gylG~~~VLalI~~fGA~~aatvTTaRKavTi~lSfllFsKPfT~qy~~~gllv~lg-I~Ln~ysk~nk~  338 (367)
T KOG1582|consen  263 AFLF-SLAGYLGIVFVLALIKLFGALIAATVTTARKAVTILLSFLLFSKPFTEQYVWSGLLVVLG-IYLNMYSKRNKI  338 (367)
T ss_pred             HHHH-HHHhHhhHHHHHHHHHHhchhHHHHHHHhHhHHHHHHHHHHHcCchHHHHhhhhHHHHHH-HHhhcccCCCCC
Confidence            1111 22333223333322   2 2  666666778899999999999999987655   22222 255888888764

>PRK10452 multidrug efflux system protein MdtJ; Provisional

Probab=95.51  E-value=0.065  Score=43.60  Aligned_cols=60  Identities=18%  Similarity=0.118  Sum_probs=50.6

Q ss_pred             hHHHHHHHHHHhccch----hhhhhchHHHHHHHHHHHHhCCccccchhh---hhhheeeeeeeccC
Q 019995          257 SSYWHWVSSWLVHMVP----VENWTSLCINVQALGHCLLYCHGCRHCRRR---FLSWKVLLINFFSN  316 (332)
Q Consensus       257 t~i~~~l~~~~l~~~~----~s~~~~l~Pv~a~il~~~~LgE~~~~~~~~---~~~~~~~~~~~~~~  316 (332)
                      -+++++++..++++.|    -+.+.-+.-+.++++|++++||+++..+-.   +++-||++.|..++
T Consensus        40 ~~~sf~~ls~al~~lplsiAYavw~GiG~v~~~~ig~~~f~E~~s~~~~~gi~lIi~GVi~l~l~~~  106 (120)
T PRK10452         40 ISLSYIFLSFAVKKIALGVAYALWEGIGILFITLFSVLLFDESLSLMKIAGLTTLVAGIVLIKSGTR  106 (120)
T ss_pred             HHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhhcCCC
Confidence            5588999999999886    456666788999999999999999998777   58899999998763

>PRK11431 multidrug efflux system protein; Provisional

Probab=95.44  E-value=0.083  Score=41.93  Aligned_cols=60  Identities=12%  Similarity=0.179  Sum_probs=51.5

Q ss_pred             hHHHHHHHHHHhccch----hhhhhchHHHHHHHHHHHHhCCccccchhh---hhhheeeeeeeccC
Q 019995          257 SSYWHWVSSWLVHMVP----VENWTSLCINVQALGHCLLYCHGCRHCRRR---FLSWKVLLINFFSN  316 (332)
Q Consensus       257 t~i~~~l~~~~l~~~~----~s~~~~l~Pv~a~il~~~~LgE~~~~~~~~---~~~~~~~~~~~~~~  316 (332)
                      -+++|++...++|+.|    -+++.-+.-+.+++.|++++||++++.+-.   .++.||++.|+.++
T Consensus        39 ~~~sf~~Ls~al~~ip~gvaYAvW~GiG~v~~~lig~~~f~e~~~~~~~~gi~lIi~GVv~l~l~~~  105 (105)
T PRK11431         39 MIVSMALLAWAMKSLPVGTAYAVWTGIGAVGAAITGIVLLGESASPARLLSLALIVAGIIGLKLSTH  105 (105)
T ss_pred             HHHHHHHHHHHHhhCCcHhHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHhhhccCC
Confidence            5588899999998886    567777889999999999999999998887   48899999987653

>PF00893 Multi_Drug_Res: Small Multidrug Resistance protein; InterPro: IPR000390 Members of this family which have been characterised, belong to the small multidrug resistance (Smr) protein family and are integral membrane proteins

Probab=95.42  E-value=0.044  Score=42.42  Aligned_cols=56  Identities=18%  Similarity=0.110  Sum_probs=32.9

Q ss_pred             HHHH-HHHHHHHHHhhcccChhhH-HHhhhhhHHHHHHHHHHHHhhccccccccccchhhhhhh
Q 019995           83 SVFG-CSSQIFSFVGIQYSSPTLS-TAMLNLIPAFTFVLAIIFRLEKLNWENKSSQAKSLGTFA  144 (332)
Q Consensus        83 gl~g-~~~~~~~~~gl~~t~a~~a-sii~~~~Pv~~~ila~l~~~E~l~~~~~~~~~k~iGi~l  144 (332)
                      .+.. ...+.++..++++.|.+.+ ++...+..+.+.+.+..+++|+++.+|      ++|+.+
T Consensus        35 ~~~~~~~s~~~l~~al~~lp~~vaYavw~g~g~v~~~~~~~~~f~E~~s~~~------~~gi~l   92 (93)
T PF00893_consen   35 AVVGYGLSFYFLSLALKKLPLSVAYAVWTGLGIVGVTLVGVFFFGESLSLSK------WLGIGL   92 (93)
T ss_dssp             HHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHH--------------HHHHHH
T ss_pred             HHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHhCCCCCHHH------Hhheee
Confidence            3334 7888999999999999999 555678999999999999999998764      777754

They confer resistance to a wide range of toxic compounds by removing them for the cells. The efflux is coupled to an influx of protons. An example is Escherichia coli mvrC P23895 from SWISSPROT which prevents the incorporation of methyl viologen into cells [] and is involved in ethidium bromide efflux [].; GO: 0016021 integral to membrane; PDB: 2I68_A.

>PRK11431 multidrug efflux system protein; Provisional

Probab=95.41  E-value=0.03  Score=44.47  Aligned_cols=63  Identities=11%  Similarity=-0.031  Sum_probs=53.4

Q ss_pred             HHH-HHHHHHHHHhhcccChhhHHH-hhhhhHHHHHHHHHHHHhhccccccccccchhhhhhheeccceee
Q 019995           84 VFG-CSSQIFSFVGIQYSSPTLSTA-MLNLIPAFTFVLAIIFRLEKLNWENKSSQAKSLGTFASIGGAFVV  152 (332)
Q Consensus        84 l~g-~~~~~~~~~gl~~t~a~~asi-i~~~~Pv~~~ila~l~~~E~l~~~~~~~~~k~iGi~l~~~Gv~ll  152 (332)
                      +.+ ...+++...++++.|.+.|=. .....-+.+.+++.++++|++++.      |++|+.+-++|++.+
T Consensus        36 i~~~~~sf~~Ls~al~~ip~gvaYAvW~GiG~v~~~lig~~~f~e~~~~~------~~~gi~lIi~GVv~l  100 (105)
T PRK11431         36 VTAMIVSMALLAWAMKSLPVGTAYAVWTGIGAVGAAITGIVLLGESASPA------RLLSLALIVAGIIGL  100 (105)
T ss_pred             HHHHHHHHHHHHHHHhhCCcHhHHHHHHHHHHHHHHHHHHHHhCCCCCHH------HHHHHHHHHHHHHhh
Confidence            444 788999999999999998844 455888999999999999999876      499999999999765

>PRK09541 emrE multidrug efflux protein; Reviewed

Probab=95.37  E-value=0.026  Score=45.16  Aligned_cols=66  Identities=15%  Similarity=0.208  Sum_probs=54.8

Q ss_pred             HHHHH-HHHHHHHHHhhcccChhhHHHh-hhhhHHHHHHHHHHHHhhccccccccccchhhhhhheeccceeee
Q 019995           82 LSVFG-CSSQIFSFVGIQYSSPTLSTAM-LNLIPAFTFVLAIIFRLEKLNWENKSSQAKSLGTFASIGGAFVVT  153 (332)
Q Consensus        82 ~gl~g-~~~~~~~~~gl~~t~a~~asii-~~~~Pv~~~ila~l~~~E~l~~~~~~~~~k~iGi~l~~~Gv~ll~  153 (332)
                      ..+.+ ...+.++..++++.|.+.|=.+ ....-+.+.++++++++|++++.      |++|+.+-++|+..+-
T Consensus        35 ~~~~~~~~sf~~l~~al~~ipl~iAYavw~GlG~v~~~l~g~~~f~e~~~~~------~~~gi~lIi~GVi~l~  102 (110)
T PRK09541         35 GTIICYCASFWLLAQTLAYIPTGIAYAIWSGVGIVLISLLSWGFFGQRLDLP------AIIGMMLICAGVLVIN  102 (110)
T ss_pred             HHHHHHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHHHHhCCCCCHH------HHHHHHHHHHHHHHHh
Confidence            34555 7888899999999999988555 55778888999999999999876      4999999999998764

>PRK13499 rhamnose-proton symporter; Provisional

Probab=95.34  E-value=0.31  Score=46.81  Aligned_cols=143  Identities=13%  Similarity=0.011  Sum_probs=87.7

Q ss_pred             hhhHHHHHHHHHHHHHHHH-------HHHHHHHhCCCChHHHHHHHHH---HHHHHHHH-HHHHh--hcCCC-----CCC
Q 019995           10 AALPSVGMVIVLLAQVSNM-------EVIKAAMSKGINKYVIIVYSDA---LSSLFFLF-CSFLF--HRSER-----PQL   71 (332)
Q Consensus        10 ~~~~~l~li~~~~iwg~~~-------v~~K~~~~~~~~p~~~~~~R~~---~a~l~ll~-~~~~~--~~~~~-----~~~   71 (332)
                      ..|+...++++.+..+...       +.-+.+.+.+.+|.....-.+.   ++..+.-+ ++.+.  ++|..     ++.
T Consensus       172 ~~KGi~ialisgi~~~~f~~~~~~~~~~~~~a~~~g~~~~~~~lp~~~~~~~G~~~~n~~~~~~~~~k~~~~~~~~~~~~  251 (345)
T PRK13499        172 LKKGLILAVMSGIFSACFSFAMDAGKPMHEAAAALGVDPLYAALPSYVVIMGGGAITNLGFCFIRLAKNKDLSLKADFSL  251 (345)
T ss_pred             hHhHHHHHHHHHHHHHHHHHHHhhccchhhhhhhcCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCcccchhccc
Confidence            4678888888888877777       6666554556777766666665   44443332 22222  11221     111


Q ss_pred             C----HHHHHHHHHHHHHHHHHHHHHHHhhcccChhhHHH---hh-hhhHHHHHHHHHHHHhhccccccccccchhhhhh
Q 019995           72 T----FSILCSFFLLSVFGCSSQIFSFVGIQYSSPTLSTA---ML-NLIPAFTFVLAIIFRLEKLNWENKSSQAKSLGTF  143 (332)
Q Consensus        72 ~----~~~~~~~~~~gl~g~~~~~~~~~gl~~t~a~~asi---i~-~~~Pv~~~ila~l~~~E~l~~~~~~~~~k~iGi~  143 (332)
                      +    .++....++-|++-...+.+|.+|....+...+.+   +. ++.-++..+-+. ++||+=+-.+|.-+.-++|++
T Consensus       252 ~~~~~~~n~l~~~l~G~~W~~~~~~y~~~~~~~g~~~~~~sw~l~m~~~ViistlwGi-~lkE~K~a~~k~~~~l~~G~v  330 (345)
T PRK13499        252 AKPLLITNVLLSALAGVMWYLQFFFYAMGHSKLGAQYDFVSWMLHMSFYVLCGNLWGL-VLKEWKGASRRPVRVLSLGCV  330 (345)
T ss_pred             cchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccchHHHHHhccHHHHHHHHhhh-hhhhccCCCccchhHHHHHHH
Confidence            2    23333345566666788888999888876655555   55 444455555555 689987644445566789999


Q ss_pred             heeccceeee
Q 019995          144 ASIGGAFVVT  153 (332)
Q Consensus       144 l~~~Gv~ll~  153 (332)
                      +-++|+.++.
T Consensus       331 liI~g~~lig  340 (345)
T PRK13499        331 VIILAANIVG  340 (345)
T ss_pred             HHHHHHHHHh
Confidence            9999987754

>PRK10650 multidrug efflux system protein MdtI; Provisional

Probab=95.31  E-value=0.13  Score=41.16  Aligned_cols=57  Identities=12%  Similarity=0.059  Sum_probs=48.9

Q ss_pred             hHHHHHHHHHHhccch----hhhhhchHHHHHHHHHHHHhCCccccchhh---hhhheeeeeee
Q 019995          257 SSYWHWVSSWLVHMVP----VENWTSLCINVQALGHCLLYCHGCRHCRRR---FLSWKVLLINF  313 (332)
Q Consensus       257 t~i~~~l~~~~l~~~~----~s~~~~l~Pv~a~il~~~~LgE~~~~~~~~---~~~~~~~~~~~  313 (332)
                      -+++|++...++|+.|    -+++.-+.-+.+++.|++++||++++.+-.   .++.||++.|+
T Consensus        45 ~~~sf~~Ls~al~~lpvgvAYAvW~GiG~v~~~~ig~~~f~e~~~~~~~~gi~lIi~GVi~lkl  108 (109)
T PRK10650         45 VLAAFSALSQAVKGIDLSVAYALWGGFGIAATLAAGWILFGQRLNRKGWIGLVLLLAGMVMIKL  108 (109)
T ss_pred             HHHHHHHHHHHHhhCchHHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHhcc
Confidence            5689999999999886    567777888999999999999999998877   48888888774

>KOG1441 consensus Glucose-6-phosphate/phosphate and phosphoenolpyruvate/phosphate antiporter [Carbohydrate transport and metabolism; Amino acid transport and metabolism]

Probab=95.09  E-value=0.028  Score=53.29  Aligned_cols=135  Identities=16%  Similarity=0.175  Sum_probs=102.2

Q ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHHH---hCCCChHHHHHHHHHHHHHHHH-HHHHHhhcCCC-----CCCCHHHHHHHH
Q 019995           10 AALPSVGMVIVLLAQVSNMEVIKAAM---SKGINKYVIIVYSDALSSLFFL-FCSFLFHRSER-----PQLTFSILCSFF   80 (332)
Q Consensus        10 ~~~~~l~li~~~~iwg~~~v~~K~~~---~~~~~p~~~~~~R~~~a~l~ll-~~~~~~~~~~~-----~~~~~~~~~~~~   80 (332)
                      ...+.+...++.+..+...+++|..+   ++..++..+..+---++..+++ |+....+....     ...+.+ .....
T Consensus       161 n~~G~i~a~~s~~~~al~~I~~~~ll~~~~~~~~~~~ll~y~ap~s~~~Ll~P~~~~~~~~~~~~~~~~~~~~~-~~~~~  239 (316)
T KOG1441|consen  161 NLFGFISAMISNLAFALRNILSKKLLTSKGESLNSMNLLYYTAPISLIFLLIPFLDYVEGNKFVGFLTAPWFVT-FLILL  239 (316)
T ss_pred             cHHHHHHHHHHHHHHHHHHHHHHHhhhccccccCchHHHHHhhhHHHHHHhcchHhhhcccceeeeeccccchh-hHHHH
Confidence            46688888899999999999999988   3358999999999899999988 88666443221     122223 23334


Q ss_pred             HHHHHHHHHHHHHHHhhcccChhhHHHhhhhhHHHHHHHHHHHHhhccccccccccchhhhhhheecccee
Q 019995           81 LLSVFGCSSQIFSFVGIQYSSPTLSTAMLNLIPAFTFVLAIIFRLEKLNWENKSSQAKSLGTFASIGGAFV  151 (332)
Q Consensus        81 ~~gl~g~~~~~~~~~gl~~t~a~~asii~~~~Pv~~~ila~l~~~E~l~~~~~~~~~k~iGi~l~~~Gv~l  151 (332)
                      ...++....+...|+.+..++|-+=++....==.++...++++++|+++..+      ..|..++++|+.+
T Consensus       240 ~~sv~~f~~Nls~f~~ig~tSalT~~V~g~~K~~~vi~~s~~iF~~pvt~~n------~~G~~iai~Gv~~  304 (316)
T KOG1441|consen  240 LNSVLAFLLNLSAFLVIGRTSALTYSVAGHMKRIVVIVVSWLIFGNPVTFLN------ALGYAIAILGVFL  304 (316)
T ss_pred             HHHHHHHHHHHHHHHHHcccCchhhhhhccceEEEEEEeEeeeecCCCchhh------HHHHHHHHHHHHH
Confidence            4555557778888999999999887777665555566678888899988765      9999999999975

>KOG1583 consensus UDP-N-acetylglucosamine transporter [Carbohydrate transport and metabolism]

Probab=94.40  E-value=0.4  Score=44.33  Aligned_cols=256  Identities=13%  Similarity=0.117  Sum_probs=146.5

Q ss_pred             HHHHHHHHHHhCC-CChHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHhhccc-Chh
Q 019995           26 SNMEVIKAAMSKG-INKYVIIVYSDALSSLFFLFCSFLFHRSERPQLTFSILCSFFLLSVFGCSSQIFSFVGIQYS-SPT  103 (332)
Q Consensus        26 ~~~v~~K~~~~~~-~~p~~~~~~R~~~a~l~ll~~~~~~~~~~~~~~~~~~~~~~~~~gl~g~~~~~~~~~gl~~t-~a~  103 (332)
                      ++.++.-...+.+ -+-..+++.+|++-++-=+++.--+. ..+++.+.|++..  ...++ +..+.+..+++++- +-.
T Consensus        17 snvv~lE~L~~~~pgsgNLITFaqFlFia~eGlif~skf~-~~k~kiplk~Y~i--~V~mF-F~vnv~NN~al~f~I~~P   92 (330)
T KOG1583|consen   17 SNVVFLELLVRNEPGSGNLITFAQFLFIATEGLIFTSKFF-TVKPKIPLKDYAI--TVAMF-FIVNVTNNYALKFNIPMP   92 (330)
T ss_pred             chHHHHHHHHHhCCCCeeehHHHHHHHHHHhceeeecccc-ccCCCCchhhhhe--ehhee-eeeeeeccceeeecccce
Confidence            4455544444332 23357788888877664443321111 1235677776433  33333 34555666777774 444


Q ss_pred             hHHHhhhhhHHHHHHHHHHHHhhccccccccccchhhhhhheeccceeeeecCCCCCcCCCCCCCCCCcccCCCCccchh
Q 019995          104 LSTAMLNLIPAFTFVLAIIFRLEKLNWENKSSQAKSLGTFASIGGAFVVTFYKGPPLIGELSHSGSPRRLLLSPQLSWIL  183 (332)
Q Consensus       104 ~asii~~~~Pv~~~ila~l~~~E~l~~~~~~~~~k~iGi~l~~~Gv~ll~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~  183 (332)
                      .=-++-+-.++-+.++++++.+.|-+      ..|+..+.+--+|+++-.+.+.++....  +++.+.+++..+...|..
T Consensus        93 lHiIfRsgsll~nM~~g~il~~k~Ys------~~Qy~Sv~~iTiGiiIcTl~s~~d~~~~--~~~l~~~~~~~~~~~w~i  164 (330)
T KOG1583|consen   93 LHIIFRSGSLLANMILGWILLGKRYS------LRQYSSVLMITIGIIICTLFSSKDGRSK--LSGLDSGSAQSDFFWWLI  164 (330)
T ss_pred             EEEEEecCcHHHHHHHHHHhccceee------hhhhhhHHhhhhhheeEEeecCcchhhh--hcccccCcccccchHHHH
Confidence            44445567788889999999776554      4569999999999988877655443220  111111112223345689


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhcc-hhHHHHHHHHHHHHHHHHHHHHHHcCCC-CCc--------------cccchh
Q 019995          184 GGFFLAAEAFMNSAWFILQALILRKFA-AVLIIMFYLFFFNTILSTAFALIVVSEP-SDW--------------KLGLDI  247 (332)
Q Consensus       184 G~~l~L~aa~~~A~~~vl~~~~~~~~~-~~~~~~~~~~~~g~i~l~~~~~~~~~~~-~~~--------------~~~~~~  247 (332)
                      |..++..|-+.-|.-.+.|++.-|++. .+-...++.=.......+    +..++. ++|              ...-+.
T Consensus       165 Gi~lL~~al~~sa~mgiyqE~~Y~kyGKh~~EalFytH~LsLP~Fl----f~~~div~~~~~~~~se~~~~p~~g~~vP~  240 (330)
T KOG1583|consen  165 GIALLVFALLLSAYMGIYQETTYQKYGKHWKEALFYTHFLSLPLFL----FMGDDIVSHWRLAFKSESYLIPLLGFKVPS  240 (330)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHhccchHH----HhcchHHHHHHHHhcCcceeccccCccccH
Confidence            999988888888888888877655542 344455665544443332    222210 011              000112


Q ss_pred             hHHHHHHHhhHHHHHHHHHHhcc-------c-h--hhhhhchHHHHHHHHHHHHhCCccccchhh
Q 019995          248 GLVAVLYSVSSYWHWVSSWLVHM-------V-P--VENWTSLCINVQALGHCLLYCHGCRHCRRR  302 (332)
Q Consensus       248 ~~~~l~~~gt~i~~~l~~~~l~~-------~-~--~s~~~~l~Pv~a~il~~~~LgE~~~~~~~~  302 (332)
                      .|..++.  ..+.   |+.+++-       . +  ++....+--.+..+++.+.++.++++.|.+
T Consensus       241 ~~~yLl~--n~L~---Qy~CikgVy~L~te~~sLTVTlvltlRKFvSLl~SiiyF~Npft~~h~l  300 (330)
T KOG1583|consen  241 MWVYLLF--NVLT---QYFCIKGVYILTTETSSLTVTLVLTLRKFVSLLFSIIYFENPFTPWHWL  300 (330)
T ss_pred             HHHHHHH--HHHH---HHHHHHhhhhhhceecceEEEEeeeHHHHHHHhheeeEecCCCCHHHHH
Confidence            3333322  2222   2222322       2 2  777777888999999999999999987766

>PF04657 DUF606: Protein of unknown function, DUF606; InterPro: IPR006750 This family contains uncharacterised bacterial proteins

Probab=94.38  E-value=0.54  Score=39.11  Aligned_cols=106  Identities=15%  Similarity=0.151  Sum_probs=70.4

Q ss_pred             ChHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHhhcccChhhHHHhhhhh-HHHHHH
Q 019995           40 NKYVIIVYSDALSSLFFLFCSFLFHRSERPQLTFSILCSFFLLSVFGCSSQIFSFVGIQYSSPTLSTAMLNLI-PAFTFV  118 (332)
Q Consensus        40 ~p~~~~~~R~~~a~l~ll~~~~~~~~~~~~~~~~~~~~~~~~~gl~g~~~~~~~~~gl~~t~a~~asii~~~~-Pv~~~i  118 (332)
                      +|..-++.-+..+.+.+..+....+++..++.+...|+. ..=|++|...-.+.....+..+++.+..+.-+. -+...+
T Consensus        29 s~~~as~i~~~~G~i~~~i~~~~~~~~~~~~~~~~p~w~-~lGG~lG~~~V~~~~~~vp~lG~~~~~~l~~~GQl~~sl~  107 (138)
T PF04657_consen   29 SPLVASFISFGVGFILLLIILLITGRPSLASLSSVPWWA-YLGGLLGVFFVLSNIILVPRLGAALTTILIVAGQLIASLL  107 (138)
T ss_pred             ccHHHHHHHHHHHHHHHHHHHHHhcccccchhccCChHH-hccHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHH
Confidence            699999999999999888776665443222222223333 347788877888888899999988887765443 344444


Q ss_pred             HHHH--HHhhccccccccccchhhhhhheeccce
Q 019995          119 LAII--FRLEKLNWENKSSQAKSLGTFASIGGAF  150 (332)
Q Consensus       119 la~l--~~~E~l~~~~~~~~~k~iGi~l~~~Gv~  150 (332)
                      +.++  +..||    ++.+..|.+|+++.++|+.
T Consensus       108 iD~fG~fg~~~----~~~~~~r~lG~~l~i~Gv~  137 (138)
T PF04657_consen  108 IDHFGLFGAPK----RPFSLRRILGLALMIAGVI  137 (138)
T ss_pred             HHHccccCCCC----CCCCHHHHHHHHHHHHHHh
Confidence            5552  22222    2344567999999999975

>KOG2765 consensus Predicted membrane protein [Function unknown]

Probab=93.34  E-value=0.32  Score=46.76  Aligned_cols=138  Identities=10%  Similarity=0.130  Sum_probs=98.5

Q ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHHHhCC---CChHHHHHHHHHHHHHHHHHHHHHhhcCCCCC---CCHHHHHHHHHHH
Q 019995           10 AALPSVGMVIVLLAQVSNMEVIKAAMSKG---INKYVIIVYSDALSSLFFLFCSFLFHRSERPQ---LTFSILCSFFLLS   83 (332)
Q Consensus        10 ~~~~~l~li~~~~iwg~~~v~~K~~~~~~---~~p~~~~~~R~~~a~l~ll~~~~~~~~~~~~~---~~~~~~~~~~~~g   83 (332)
                      ...+.++.+.+++.+|..-+..|.=.+++   .|.-.+-++=-++..++++|.......-..++   .+..+...++..+
T Consensus       245 ~llG~llaL~sA~~YavY~vllk~~~~~eg~rvdi~lffGfvGLfnllllwP~l~iL~~~~~e~F~lP~~~q~~~vv~~~  324 (416)
T KOG2765|consen  245 PLLGNLLALLSALLYAVYTVLLKRKIGDEGERVDIQLFFGFVGLFNLLLLWPPLIILDFFGEERFELPSSTQFSLVVFNN  324 (416)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHhhcccccccccHHHHHHHHHHHHHHHHhHHHHHHHHhccCcccCCCCceeEeeeHhh
Confidence            45678888899999999999999866543   45566666666777778887655543222221   2234455677889


Q ss_pred             HHH-HHHHHHHHHhhcccChhhHHHhhhhhHHHHHHHHHHHHhhccccccccccchhhhhhheeccceeee
Q 019995           84 VFG-CSSQIFSFVGIQYSSPTLSTAMLNLIPAFTFVLAIIFRLEKLNWENKSSQAKSLGTFASIGGAFVVT  153 (332)
Q Consensus        84 l~g-~~~~~~~~~gl~~t~a~~asii~~~~Pv~~~ila~l~~~E~l~~~~~~~~~k~iGi~l~~~Gv~ll~  153 (332)
                      +++ .+.-++|.+|.-.|++-.+++=.+++-....+.-.++.+.++      +...++|.+..+.|.+++.
T Consensus       325 ligtvvSDylW~~a~~lTs~Lv~TlgmSltIPLA~~aD~l~k~~~~------S~~~iiGsi~Ifv~Fv~vn  389 (416)
T KOG2765|consen  325 LIGTVVSDYLWAKAVLLTSPLVVTLGMSLTIPLAMFADVLIKGKHP------SALYIIGSIPIFVGFVIVN  389 (416)
T ss_pred             HHHHHHHHHHHHHHHHhccchhheeeeeEeeeHHHHHHHHHcCCCC------CHHHHHHHHHHHHHHhhee
Confidence            999 899999999999999999988766554445555555544444      4556999999999987765

>TIGR00803 nst UDP-galactose transporter

Probab=92.23  E-value=0.86  Score=40.63  Aligned_cols=63  Identities=11%  Similarity=0.101  Sum_probs=54.6

Q ss_pred             HHHHHHHHHHHHHhhcccChhhHHHhhhhhHHHHHHHHHHHHhhccccccccccchhhhhhheecccee
Q 019995           83 SVFGCSSQIFSFVGIQYSSPTLSTAMLNLIPAFTFVLAIIFRLEKLNWENKSSQAKSLGTFASIGGAFV  151 (332)
Q Consensus        83 gl~g~~~~~~~~~gl~~t~a~~asii~~~~Pv~~~ila~l~~~E~l~~~~~~~~~k~iGi~l~~~Gv~l  151 (332)
                      .+.+...+.+..+-++|.++..-+....+.++++.+++.++++|+++..+      ++|..+.+.|+.+
T Consensus       159 ~~~~a~~~~~v~~vlk~~~~~~~~~~~~~~~~~s~lls~~~f~~~ls~~~------~~g~~lV~~~~~l  221 (222)
T TIGR00803       159 GLLNVGGGLCIGGVVRYADNTTKSFVTALSIILSTLASVRLFDAKISSTF------YLGAILVFLATFL  221 (222)
T ss_pred             HHHHHhcCceeeehhHHhHHHHHHHHHHHHHHHHHHHHHHHhcCCccHHH------HHHHHHHHeeeEe
Confidence            34446777788899999999999999999999999999999999998764      8999999998753

NSTs generally appear to function by antiport mechanisms, exchanging a nucleotide-sugar for a nucleotide. Thus, CMP-sialic acid is exchanged for CMP; GDP-mannose is preferentially exchanged for GMP, and UDP-galactose and UDP-N-acetylglucosamine are exchanged for UMP (or possibly UDP). Other nucleotide sugars (e.g., GDP-fucose, UDP-xylose, UDP-glucose, UDP-N-acetylgalactosamine, etc.) may also be transported in exchange for various nucleotides, but their transporters have not been molecularly characterized. Each compound appears to be translocated by its own transport protein. Transport allows the compound, synthesized in the cytoplasm, to be exported to the lumen of the Golgi apparatus or the endoplasmic reticulum where it is used for the synthesis of glycoproteins and glycolipids.

>PF00893 Multi_Drug_Res: Small Multidrug Resistance protein; InterPro: IPR000390 Members of this family which have been characterised, belong to the small multidrug resistance (Smr) protein family and are integral membrane proteins

Probab=90.89  E-value=1.4  Score=33.85  Aligned_cols=46  Identities=15%  Similarity=0.175  Sum_probs=28.1

Q ss_pred             hHHHHHHHHHHhccch----hhhhhchHHHHHHHHHHHHhCCccccchhh
Q 019995          257 SSYWHWVSSWLVHMVP----VENWTSLCINVQALGHCLLYCHGCRHCRRR  302 (332)
Q Consensus       257 t~i~~~l~~~~l~~~~----~s~~~~l~Pv~a~il~~~~LgE~~~~~~~~  302 (332)
                      -++++.++..++|+.|    -+++.-+..+...+.|.+++||+++..+-.
T Consensus        39 ~~~s~~~l~~al~~lp~~vaYavw~g~g~v~~~~~~~~~f~E~~s~~~~~   88 (93)
T PF00893_consen   39 YGLSFYFLSLALKKLPLSVAYAVWTGLGIVGVTLVGVFFFGESLSLSKWL   88 (93)
T ss_dssp             HHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHH--------HH
T ss_pred             HHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHh
Confidence            4588889999999995    356667888999999999999999987654

They confer resistance to a wide range of toxic compounds by removing them for the cells. The efflux is coupled to an influx of protons. An example is Escherichia coli mvrC P23895 from SWISSPROT which prevents the incorporation of methyl viologen into cells [] and is involved in ethidium bromide efflux [].; GO: 0016021 integral to membrane; PDB: 2I68_A.

>PF04657 DUF606: Protein of unknown function, DUF606; InterPro: IPR006750 This family contains uncharacterised bacterial proteins

Probab=89.60  E-value=7.4  Score=32.30  Aligned_cols=102  Identities=11%  Similarity=-0.032  Sum_probs=64.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHHHHcCCCCCccccchhhHHHHHHHh---hHHHH
Q 019995          185 GFFLAAEAFMNSAWFILQALILRKFAAVLIIMFYLFFFNTILSTAFALIVVSEPSDWKLGLDIGLVAVLYSV---SSYWH  261 (332)
Q Consensus       185 ~~l~L~aa~~~A~~~vl~~~~~~~~~~~~~~~~~~~~~g~i~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~g---t~i~~  261 (332)
                      .++.+.+...-+....+..|+.++..+|...+++....|.+.+..+..+.++.  +++......|+..  +|   .+.--
T Consensus         3 ~lla~~aG~~i~~q~~~N~~L~~~~gs~~~as~i~~~~G~i~~~i~~~~~~~~--~~~~~~~~p~w~~--lGG~lG~~~V   78 (138)
T PF04657_consen    3 ILLALLAGALIALQAAFNGQLGKALGSPLVASFISFGVGFILLLIILLITGRP--SLASLSSVPWWAY--LGGLLGVFFV   78 (138)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHHHHHHhccc--ccchhccCChHHh--ccHHHHHHHH
Confidence            45677888888888888888888876689999999999999998877665542  2211111223332  23   44444


Q ss_pred             HHHHHHhccc-h---hhhhhchHHHHHHHHHHH
Q 019995          262 WVSSWLVHMV-P---VENWTSLCINVQALGHCL  290 (332)
Q Consensus       262 ~l~~~~l~~~-~---~s~~~~l~Pv~a~il~~~  290 (332)
                      ....+..++. +   +.....=|-+.+.+++.+
T Consensus        79 ~~~~~~vp~lG~~~~~~l~~~GQl~~sl~iD~f  111 (138)
T PF04657_consen   79 LSNIILVPRLGAALTTILIVAGQLIASLLIDHF  111 (138)
T ss_pred             HHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHc
Confidence            5566777777 4   333333455555555553

>KOG1580 consensus UDP-galactose transporter related protein [Carbohydrate transport and metabolism]

Probab=89.51  E-value=0.31  Score=44.06  Aligned_cols=71  Identities=18%  Similarity=0.288  Sum_probs=63.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhhcccChhhHHHhhhhhHHHHHHHHHHHHhhccccccccccchhhhhhheecccee
Q 019995           75 ILCSFFLLSVFGCSSQIFSFVGIQYSSPTLSTAMLNLIPAFTFVLAIIFRLEKLNWENKSSQAKSLGTFASIGGAFV  151 (332)
Q Consensus        75 ~~~~~~~~gl~g~~~~~~~~~gl~~t~a~~asii~~~~Pv~~~ila~l~~~E~l~~~~~~~~~k~iGi~l~~~Gv~l  151 (332)
                      .|..+..+|+.+.++|.+.+.-..+-+|-..+++..+--+|+.+.+.++++.+++.||      |+|..+.|.|...
T Consensus       240 ~~~~l~l~ai~s~LGQ~fIF~tv~~FgPLtCSivTTTRKfFTil~SVllf~npls~rQ------wlgtvlVF~aL~~  310 (337)
T KOG1580|consen  240 VFWDLTLLAIASCLGQWFIFKTVEEFGPLTCSIVTTTRKFFTILISVLLFNNPLSGRQ------WLGTVLVFSALTA  310 (337)
T ss_pred             HHHHHHHHHHHHHhhhHHHHHHHHHhCCeeEEEEeehHHHHHHHHHHHHhcCcCcHHH------HHHHHHHHHHhhh
Confidence            3556678888889999999999999999999999999999999999999999998775      8999999998754

>COG3238 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=88.58  E-value=9.6  Score=32.20  Aligned_cols=54  Identities=17%  Similarity=0.158  Sum_probs=44.4

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHHHHcC
Q 019995          183 LGGFFLAAEAFMNSAWFILQALILRKFAAVLIIMFYLFFFNTILSTAFALIVVS  236 (332)
Q Consensus       183 ~G~~l~L~aa~~~A~~~vl~~~~~~~~~~~~~~~~~~~~~g~i~l~~~~~~~~~  236 (332)
                      +..+..+.+..+-....-...|+.+...+|.......+.+|++.+..+....++
T Consensus         5 l~ll~~i~aG~~l~~Q~~iN~qL~~~~~spl~As~isf~vGt~~L~~l~l~~~~   58 (150)
T COG3238           5 LYLLFAILAGALLPLQAAINGRLARYLGSPLLASLISFLVGTVLLLILLLIKQG   58 (150)
T ss_pred             HHHHHHHHHhhhhhhHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHHHHHhcC
Confidence            456677888888888888888888877779999999999999999888876443

>PF05653 Mg_trans_NIPA: Magnesium transporter NIPA; InterPro: IPR008521 This family consists of several eukaryotic proteins of unknown function

Probab=85.59  E-value=3.5  Score=38.90  Aligned_cols=110  Identities=9%  Similarity=0.044  Sum_probs=68.4

Q ss_pred             cchhHHHHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHHHHcCCCCCccccchhhHHHHHHHhhHH
Q 019995          180 SWILGGFFLAAEAFMNSAWFILQALILRKFAAVLIIMFYLFFFNTILSTAFALIVVSEPSDWKLGLDIGLVAVLYSVSSY  259 (332)
Q Consensus       180 ~~~~G~~l~L~aa~~~A~~~vl~~~~~~~~~~~~~~~~~~~~~g~i~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~gt~i  259 (332)
                      ++..|..+.+.++++.+....+|||-.++.+. ...  ... -+     ...+.        .  ...-|.+++.  .++
T Consensus         4 ~~~iGv~lav~ss~~~~~g~~lqk~~~~r~~~-~~~--~~~-~~-----~~~~l--------~--~~~W~~G~~~--~~~   62 (300)
T PF05653_consen    4 DFYIGVLLAVVSSIFIAVGFNLQKKSHLRLPR-GSL--RAG-SG-----GRSYL--------R--RPLWWIGLLL--MVL   62 (300)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc-ccc--ccc-ch-----hhHHH--------h--hHHHHHHHHH--Hhc
Confidence            46789999999999999999999997655431 000  000 00     00110        0  0011223322  223


Q ss_pred             HHHHHHHHhccch---hhhhhchHHHHHHHHHHHHhCCccccchhh---hhhheeee
Q 019995          260 WHWVSSWLVHMVP---VENWTSLCINVQALGHCLLYCHGCRHCRRR---FLSWKVLL  310 (332)
Q Consensus       260 ~~~l~~~~l~~~~---~s~~~~l~Pv~a~il~~~~LgE~~~~~~~~---~~~~~~~~  310 (332)
                      +..+...++...|   ++++..+.-++.++++..++||+++..+..   +.+-|..+
T Consensus        63 g~~~~~~Al~~ap~slv~Plg~~~lv~~~~~a~~~l~e~~~~~~~~G~~l~i~G~~l  119 (300)
T PF05653_consen   63 GEILNFVALGFAPASLVAPLGALSLVFNAVLARFFLGEKLTRRDIVGCALIILGSVL  119 (300)
T ss_pred             chHHHHHHHHhhhHHHHHHHHhhhhhhHHHHhHHHhcccchHhHHhhHHHHHhhhee
Confidence            4445555666664   788888888999999999999999976655   45556553

>COG3238 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=85.43  E-value=11  Score=31.80  Aligned_cols=137  Identities=8%  Similarity=-0.012  Sum_probs=72.3

Q ss_pred             hHHHHHHHHHHHHHHHHHH-HHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHHHHHHH
Q 019995           12 LPSVGMVIVLLAQVSNMEV-IKAAMSKGINKYVIIVYSDALSSLFFLFCSFLFHRSERPQLTFSILCSFFLLSVFGCSSQ   90 (332)
Q Consensus        12 ~~~l~li~~~~iwg~~~v~-~K~~~~~~~~p~~~~~~R~~~a~l~ll~~~~~~~~~~~~~~~~~~~~~~~~~gl~g~~~~   90 (332)
                      ...+..+.+.++-.....+ .+++ +..-+|+.-...-+..+.+.+..+....+++.......+.=++...=|++|...-
T Consensus         5 l~ll~~i~aG~~l~~Q~~iN~qL~-~~~~spl~As~isf~vGt~~L~~l~l~~~~~~~~a~~~~~pwW~~~GG~lGa~~v   83 (150)
T COG3238           5 LYLLFAILAGALLPLQAAINGRLA-RYLGSPLLASLISFLVGTVLLLILLLIKQGHPGLAAVASAPWWAWIGGLLGAIFV   83 (150)
T ss_pred             HHHHHHHHHhhhhhhHHHHHHHHH-HHcCChHHHHHHHHHHHHHHHHHHHHHhcCCCchhhccCCchHHHHccchhhhhh
Confidence            3444444444444444443 4444 3323799999999999998888776663322211211111112234455554444


Q ss_pred             HHHHHhhcccChhhHHHh-hhhhHHHHHHHHHH-HHhhccccccccccchhhhhhheeccceee
Q 019995           91 IFSFVGIQYSSPTLSTAM-LNLIPAFTFVLAII-FRLEKLNWENKSSQAKSLGTFASIGGAFVV  152 (332)
Q Consensus        91 ~~~~~gl~~t~a~~asii-~~~~Pv~~~ila~l-~~~E~l~~~~~~~~~k~iGi~l~~~Gv~ll  152 (332)
                      ..-........++....+ ..-+-+...++..+ +++++   ++..+..|++|+++.++|+.++
T Consensus        84 t~s~~l~p~lGa~~t~~l~i~gQli~glliD~fG~~g~~---~~~~~~~r~lgi~L~l~gil~~  144 (150)
T COG3238          84 TSSILLAPRLGAATTIALVIAGQLIMGLLIDHFGWFGVP---KRPLNLPRILGILLVLAGILLA  144 (150)
T ss_pred             hhhHHhccchhHHHHHHHHHHHHHHHHHHHHhhcccCCC---cCCCCHHHHHHHHHHHHHHHHh
Confidence            444445555555554443 33333333333321 13332   2456778899999999996543

>KOG1444 consensus Nucleotide-sugar transporter VRG4/SQV-7 [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]

Probab=83.78  E-value=6.8  Score=37.01  Aligned_cols=135  Identities=18%  Similarity=0.216  Sum_probs=91.4

Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHHHHHHHHHHhhc-C----CCC-CCCHHHHHHHHHHH
Q 019995           11 ALPSVGMVIVLLAQVSNMEVIKAAMSK-GINKYVIIVYSDALSSLFFLFCSFLFHR-S----ERP-QLTFSILCSFFLLS   83 (332)
Q Consensus        11 ~~~~l~li~~~~iwg~~~v~~K~~~~~-~~~p~~~~~~R~~~a~l~ll~~~~~~~~-~----~~~-~~~~~~~~~~~~~g   83 (332)
                      .++|.++....+.-+...+..|..++. +..-+.+..+.-+++.+.+....+...- +    ..+ -....-+....+-+
T Consensus       156 ~~gY~w~~~n~~~~a~~~v~~kk~vd~~~l~~~~lv~yNnl~~L~~l~~~~~~~ge~~~l~~~~~~~~~~~~~~~~~lSc  235 (314)
T KOG1444|consen  156 LRGYSWALANCLTTAAFVVYVKKSVDSANLNKFGLVFYNNLLSLPPLLILSFITGELDALSLNFDNWSDSSVLVVMLLSC  235 (314)
T ss_pred             chhHHHHHHHHHHHHHHHHHHHHhhccccccceeEEeehhHHHHHHHHHHHHHhcchHHHHhhcccccchhHHHHHHHHH
Confidence            346777777777778888888887765 2566677888888887777665544211 0    000 01122244455566


Q ss_pred             HHHHHHHHHHHHhhcccChhhHHHhhhhhHHHHHHHHHHHHhhccccccccccchhhhhhheecccee
Q 019995           84 VFGCSSQIFSFVGIQYSSPTLSTAMLNLIPAFTFVLAIIFRLEKLNWENKSSQAKSLGTFASIGGAFV  151 (332)
Q Consensus        84 l~g~~~~~~~~~gl~~t~a~~asii~~~~Pv~~~ila~l~~~E~l~~~~~~~~~k~iGi~l~~~Gv~l  151 (332)
                      +++.+-.++.++.-+..|+..-++.....=..+.+...++++++.++-      ..+|+.++++|-++
T Consensus       236 v~gf~isy~s~~ct~~~SAtT~tivG~~n~l~t~l~~ll~~d~~~~~~------n~~gll~~~~ggv~  297 (314)
T KOG1444|consen  236 VMGFGISYTSFLCTRVNSATTTTIVGAKNKLLTYLGGLLFGDKPFTFL------NVIGLLVGFFGGVL  297 (314)
T ss_pred             HHHHHHHHHHHHHHhhccccceeehhhhhhHHHHHHHHhcCCceechh------hhHHHHHHhhhhhH
Confidence            667778888889999999988888875555556666667777777654      59999999998754

>COG4975 GlcU Putative glucose uptake permease [Carbohydrate transport and metabolism]

Probab=81.44  E-value=0.6  Score=42.55  Aligned_cols=107  Identities=12%  Similarity=0.095  Sum_probs=73.1

Q ss_pred             CCChHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHhhcccChhhHHHhhhhhHHHHH
Q 019995           38 GINKYVIIVYSDALSSLFFLFCSFLFHRSERPQLTFSILCSFFLLSVFGCSSQIFSFVGIQYSSPTLSTAMLNLIPAFTF  117 (332)
Q Consensus        38 ~~~p~~~~~~R~~~a~l~ll~~~~~~~~~~~~~~~~~~~~~~~~~gl~g~~~~~~~~~gl~~t~a~~asii~~~~Pv~~~  117 (332)
                      +.+.+.--+.-+.++++.+-    .  +|..++.++.. ..-++-|++....+.+++.+-+....+++=.+.++..+...
T Consensus       178 g~saiLPqAiGMv~~ali~~----~--~~~~~~~~K~t-~~nii~G~~Wa~GNl~ml~a~~~~GvAt~FSlSQlgViisT  250 (288)
T COG4975         178 GLSAILPQAIGMVIGALILG----F--FKMEKRFNKYT-WLNIIPGLIWAIGNLFMLLAAQKVGVATSFSLSQLGVIIST  250 (288)
T ss_pred             chhhhhHHHHHHHHHHHHHh----h--cccccchHHHH-HHHHhhHHHHHhhHHHHHHhhhhhceeeeeeHhhheeeeee
Confidence            35555555555666665543    1  22122333333 34467788887888888888888777777777788888888


Q ss_pred             HHHHHHHhhccccccccccchhhhhhheeccceeee
Q 019995          118 VLAIIFRLEKLNWENKSSQAKSLGTFASIGGAFVVT  153 (332)
Q Consensus       118 ila~l~~~E~l~~~~~~~~~k~iGi~l~~~Gv~ll~  153 (332)
                      +-+.+++|||=+.|++.  .-++|+++-+.|+.++.
T Consensus       251 iGGIl~L~ekKtkkEm~--~v~iGiilivvgai~lg  284 (288)
T COG4975         251 IGGILFLGEKKTKKEMV--YVIIGIILIVVGAILLG  284 (288)
T ss_pred             cceEEEEeccCchhhhh--hhhhhHHHHHHHhhhhh
Confidence            88899999998888753  35788888888876653

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	332
2i68_A	137	Protein EMRE; transmembrane protein, small-multidr	97.92
3b5d_A	110	Multidrug transporter EMRE; helical membrane prote	97.85
2i68_A	137	Protein EMRE; transmembrane protein, small-multidr	97.52
3b5d_A	110	Multidrug transporter EMRE; helical membrane prote	97.33

>2i68_A Protein EMRE; transmembrane protein, small-multidrug resistance, transporter, homodimer, dual topology, transport protein; NMR {Escherichia coli}

Probab=97.92  E-value=5.8e-06  Score=67.75  Aligned_cols=67  Identities=13%  Similarity=0.213  Sum_probs=50.5

Q ss_pred             HHHHHH-HHHHHHHHHhhcccChhhHHHh-hhhhHHHHHHHHHHHHhhccccccccccchhhhhhheeccceeee
Q 019995           81 LLSVFG-CSSQIFSFVGIQYSSPTLSTAM-LNLIPAFTFVLAIIFRLEKLNWENKSSQAKSLGTFASIGGAFVVT  153 (332)
Q Consensus        81 ~~gl~g-~~~~~~~~~gl~~t~a~~asii-~~~~Pv~~~ila~l~~~E~l~~~~~~~~~k~iGi~l~~~Gv~ll~  153 (332)
                      +.+++. .+.++++..++++.+++.+..+ .++.|++++++++++++|++++.+      ++|+++.++|+.++.
T Consensus        34 ~l~i~~~~ls~~l~~~alk~i~~s~ay~iw~~l~pv~~~l~g~l~lgE~ls~~~------~~Gi~LIi~GV~ll~  102 (137)
T 2i68_A           34 VGTIICYCASFWLLAQTLAYIPTGIAYAIWSGVGIVLISLLSWGFFGQRLDLPA------IIGMMLICAGVLIIN  102 (137)
T ss_dssp             CHHHHHHHHHHHHHHHHHC-----CHHHHHHHHHHHHHHHHHHHHHC------C------HHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHhCChhHHHHHHHHHHHHHHHHHHHHHhCCCCCHHH------HHHHHHHHHHHHHHh
Confidence            566666 8899999999999999999888 899999999999999999998764      999999999998875

>3b5d_A Multidrug transporter EMRE; helical membrane protein, multidrug resistance transporter, SMR, antiport, inner membrane, transmembrane; HET: P4P; 3.80A {Escherichia coli K12} PDB: 3b61_A 3b62_A*

Probab=97.85  E-value=1.2e-05  Score=63.32  Aligned_cols=67  Identities=13%  Similarity=0.213  Sum_probs=59.7

Q ss_pred             HHHHHH-HHHHHHHHHhhcccChhhHHHh-hhhhHHHHHHHHHHHHhhccccccccccchhhhhhheeccceeee
Q 019995           81 LLSVFG-CSSQIFSFVGIQYSSPTLSTAM-LNLIPAFTFVLAIIFRLEKLNWENKSSQAKSLGTFASIGGAFVVT  153 (332)
Q Consensus        81 ~~gl~g-~~~~~~~~~gl~~t~a~~asii-~~~~Pv~~~ila~l~~~E~l~~~~~~~~~k~iGi~l~~~Gv~ll~  153 (332)
                      ..+++. ...+.++..++++.|.+.+..+ ..+.|++++++++++++|+++..      |++|+.+.++|+.++.
T Consensus        34 ~~~~~~~~~~~~~~~~al~~~p~s~ay~i~~g~~~v~~~l~~~~~~~E~~s~~------~~~Gi~lIi~Gv~~l~  102 (110)
T 3b5d_A           34 VGTIICYCASFWLLAQTLAYIPTGIAYAIWSGVGIVLISLLSWGFFGQRLDLP------AIIGMMLICAGVLIIN  102 (110)
T ss_pred             HHHHHHHHHHHHHHHHHHHhCChhhHHHHHhhHHHHHHHHHHHHHhCCCCCHH------HHHHHHHHHHHHHHHh
Confidence            455666 7889999999999999999888 79999999999999999999876      4999999999998765

>2i68_A Protein EMRE; transmembrane protein, small-multidrug resistance, transporter, homodimer, dual topology, transport protein; NMR {Escherichia coli}

Probab=97.52  E-value=0.00012  Score=59.90  Aligned_cols=61  Identities=15%  Similarity=0.151  Sum_probs=43.4

Q ss_pred             hHHHHHHHHHHhccch---hhhh-hchHHHHHHHHHHHHhCCccccchhh---hhhheeeeeeeccCC
Q 019995          257 SSYWHWVSSWLVHMVP---VENW-TSLCINVQALGHCLLYCHGCRHCRRR---FLSWKVLLINFFSND  317 (332)
Q Consensus       257 t~i~~~l~~~~l~~~~---~s~~-~~l~Pv~a~il~~~~LgE~~~~~~~~---~~~~~~~~~~~~~~~  317 (332)
                      ++++|.+|.+++++.|   +.++ ..+.|++++++|++++||+++..+-.   +++.||++.|..+++
T Consensus        40 ~~ls~~l~~~alk~i~~s~ay~iw~~l~pv~~~l~g~l~lgE~ls~~~~~Gi~LIi~GV~ll~~~~~~  107 (137)
T 2i68_A           40 YCASFWLLAQTLAYIPTGIAYAIWSGVGIVLISLLSWGFFGQRLDLPAIIGMMLICAGVLIINLLSRS  107 (137)
T ss_dssp             HHHHHHHHHHHHC-----CHHHHHHHHHHHHHHHHHHHHHC------CHHHHHHHHHHHHHHHHC---
T ss_pred             HHHHHHHHHHHHHhCChhHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhcCCCC
Confidence            7799999999999994   6566 89999999999999999999987665   588899999876543

>3b5d_A Multidrug transporter EMRE; helical membrane protein, multidrug resistance transporter, SMR, antiport, inner membrane, transmembrane; HET: P4P; 3.80A {Escherichia coli K12} PDB: 3b61_A 3b62_A*

Probab=97.33  E-value=0.00059  Score=53.49  Aligned_cols=61  Identities=15%  Similarity=0.151  Sum_probs=51.8

Q ss_pred             hHHHHHHHHHHhccch---hhhh-hchHHHHHHHHHHHHhCCccccchhh---hhhheeeeeeeccCC
Q 019995          257 SSYWHWVSSWLVHMVP---VENW-TSLCINVQALGHCLLYCHGCRHCRRR---FLSWKVLLINFFSND  317 (332)
Q Consensus       257 t~i~~~l~~~~l~~~~---~s~~-~~l~Pv~a~il~~~~LgE~~~~~~~~---~~~~~~~~~~~~~~~  317 (332)
                      .+++|.++.+++|+.|   +.+. ..+.|+.++++|++++||+++..+-.   +++-||++.|..+|+
T Consensus        40 ~~~~~~~~~~al~~~p~s~ay~i~~g~~~v~~~l~~~~~~~E~~s~~~~~Gi~lIi~Gv~~l~~~~~~  107 (110)
T 3b5d_A           40 YCASFWLLAQTLAYIPTGIAYAIWSGVGIVLISLLSWGFFGQRLDLPAIIGMMLICAGVLIINLLSRS  107 (110)
T ss_pred             HHHHHHHHHHHHHhCChhhHHHHHhhHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhcCCCC
Confidence            6689999999999995   5455 78999999999999999999987666   588999999887643

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Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00