Citrus Sinensis ID: 020002

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330--
Protein Sequence
MGSLQGPVFCPAVRARQGGLYNTVPSTGPVMKARFFRSELWGFKGLTAVKTKVGVFTRQQNARKCKIVQCTFSSSSNGNGSMAENFNENDEDFVNSSVVEAVEVKSGADGFMIKMRDGRHLRCVHNNPQGGHLPDYAPHPAIVLKMEDGTGLLLPIIVRTRDAKRVAYGGNAQCANCRPTLYQVVKEMIEKMGYEVRLVRVTKRVHEAYFAQLYLTKVGNETECVSFDLRPSDAINIAVRCKVPIQVNKYLAYSDGMRVIESGKLSTHSPGSDGLLFTELDKPSGQPCLDTKEFNLVRNMLIAAVEERYRDAAQWRDKLGQLRAKRNLRKFT
Secondary Structure (PSIPRED)
ccccccccccccHHcccccccccccccccccEEEEEcccccccccccccccccEEEcccccccccEEEEEEEccccccccccccccccccccccccEEEEEEEEEEcccccEEEEccccEEEEEEEEEcEEEccccccccEEEEEEEccccEEEEEEEcHHHHHHHHHHHccccccccccHHHHHHHHHHHHccEEEEEEEEEEEccEEEEEEEEEEcccccEEEEEEccHHHHHHHHHHccccEEEEHHHHHHccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHccccc
Secondary Structure Prediction (SSPRO)
cccccccEEcccHHHHHcccccccccccccHcHccEHHHHHcccccccEEEEEEEcccccccccccEEEEEEccccccccccccccccccHHHcccEEEEEEEEEcccccEEEEEccccEEEEEEcccccccccccccccEEEEEEcccccEEEEEEEcHHHHHHHHHHHHcccccccccHHHHHHHHHHHcccEEEEEEEEEccccEEEEEEEEEEccccEEEEEEEccccHHHHHHHHccccEEEcHHHHHHcccEEEccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccc
Coil and Loop (DISEMBL)
mgslqgpvfcpavrarqgglyntvpstgpvmkarffrselwgfkgltaVKTKVGVFTrqqnarkckivqctfssssngngsmaenfnendedfvNSSVVEAVevksgadgfmikmrdgrhlrcvhnnpqgghlpdyaphpaIVLKmedgtglllpIIVRTrdakrvayggnaqcancrpTLYQVVKEMIEKMGYEVRLVRVTKRVHEAYFAQLYLTkvgnetecvsfdlrpsdainIAVRCKVPIqvnkylaysdgmrviesgklsthspgsdgllfteldkpsgqpcldtkefNLVRNMLIAAVEERYRDAAQWRDKLGQLRAKRNLRKFT
Flexible Loop (DISEMBL)
MGSLQGPVFCPAvrarqgglyntvpstgpvMKARFFRSELWGFKGLTAVKTKVGvftrqqnarkckivqctfssssngngSMAENFNENDEDFVNSSVVEAVEVKSGADGFMIKMRDGRHLRCVHNNPQGGHLPDYAPHPAIVLKMEDGTGLLLPIIVRTRDAKRVayggnaqcancrPTLYQVVKEMIEKMGYEVRLVRVTKRVHEAYFAQLYLTKVGNETECVSFDLRPSDAINIAVRCKVPIQVNKYLAYSDGMRVIESGKLSTHSPGSDGLLFTELDKPSGQPCLDTKEFNLVRNMLIAAVEERYRDAAQWRDKlgqlrakrnlrkft
Low Complexity Region (SEG)
MGSLQGPVFCPAVRARQGGLYNTVPSTGPVMKARFFRSELWGFKGLTAVKTKVGVFTRQQNARKCKIVQCTFSSSSNGNGSMAenfnendedfVNSSVVEAVEVKSGADGFMIKMRDGRHLRCVHNNPQGGHLPDYAPHPAIVLKMEDGTGLLLPIIVRTRDAKRVAYGGNAQCANCRPTLYQVVKEMIEKMGYEVRLVRVTKRVHEAYFAQLYLTKVGNETECVSFDLRPSDAINIAVRCKVPIQVNKYLAYSDGMRVIESGKLSTHSPGSDGLLFTELDKPSGQPCLDTKEFNLVRNMLIAAVEERYRDAAQWRDKLGQLRAKRNLRKFT
Disordered region (IsUnstruct)
*******VFCPAVRARQGGLYNTVPSTGPVMKARFFRSELWGFKGLTAVKTKVGVFTRQQNARKCKIVQCTF*************************VVEAVEVKSGADGFMIKMRDGRHLRCVHNNPQGGHLPDYAPHPAIVLKMEDGTGLLLPIIVRTRDAKRVAYGGNAQCANCRPTLYQVVKEMIEKMGYEVRLVRVTKRVHEAYFAQLYLTKVGNETECVSFDLRPSDAINIAVRCKVPIQVNKYLAYSDGMRVIE**************LFT********PCLDTKEFNLVRNMLIAAVEERYRDAAQWRDK**************
Disordered Region (DISOPRED)
****QGPVFCPAVRARQGGLYNTVPSTGPVMKARFFRSELWGFKGLTAVKTKVG************************************EDFVNSSVVEAVEVKSGADGFMIKMRDGRHLRCVHNNPQGGHLPDYAPHPAIVLKMEDGTGLLLPIIVRTRDAKRVAYGGNAQCANCRPTLYQVVKEMIEKMGYEVRLVRVTKRVHEAYFAQLYLTKVGNETECVSFDLRPSDAINIAVRCKVPIQVNKYLAYS*****************************************LVRNMLIAAVEERYRDAAQWRD***************
Disordered Region (DISEMBL)
MGSLQGPVFCPAVRARQGGLYNTVPSTGPVMKARFFRSELWGFKGLTAVKTKVGVFTRQQNARKCKIVQCTFSSSSNGNGSMAENFNENDEDFVNSSVVEAVEVKSGADGFMIKMRDGRHLRCVHNNPQGGHLPDYAPHPAIVLKMEDGTGLLLPIIVRTRDAKRVAYGGNAQCANCRPTLYQVVKEMIEKMGYEVRLVRVTKRVHEAYFAQLYLTKVGNETECVSFDLRPSDAINIAVRCKVPIQVNKYLAYSDGMRVIESGKLSTHSPGSDGLLFTELDKPSGQPCLDTKEFNLVRNMLIAAVEERYRDAAQWRDKLGQLRAKRNLRKFT
Disordered Region (DISPRO)
***LQGPVFCPAVRARQGGLYNTVPSTGPVMKARFFRSELWGFKGLTAVKTKVGVFTRQQNARKCKIVQCTFSS**************NDEDFVNSSVVEAVEVKSGADGFMIKMRDGRHLRCVHNNPQGGHLPDYAPHPAIVLKMEDGTGLLLPIIVRTRDAKRVAYGGNAQCANCRPTLYQVVKEMIEKMGYEVRLVRVTKRVHEAYFAQLYLTKVGNETECVSFDLRPSDAINIAVRCKVPIQVNKYLAYSDGMRVIES************************PCLDTKEFNLVRNMLIAAVEERYRDAAQWRDKLGQLRAKRN*****
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MGSLQGPVFCPAVRARQGGLYNTVPSTGPVMKARFFRSELWGFKGLTAVKTKVGVFTRQQNARKCKIVQCTFSSSSNGNGSMAENFNENDEDFVNSSVVEAVEVKSGADGFMIKMRDGRHLRCVHNNPQGGHLPDYAPHPAIVLKMEDGTGLLLPIIVRTRDAKRVAYGGNAQCANCRPTLYQVVKEMIEKMGYEVRLVRVTKRVHEAYFAQLYLTKVGNETECVSFDLRPSDAINIAVRCKVPIQVNKYLAYSDGMRVIESGKLSTHSPGSDGLLFTELDKPSGQPCLDTKEFNLVRNMLIAAVEERYRDAAQWRDKLGQLRAKRNLRKFT
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	332	2.2.26 [Sep-21-2011]
Q9FWS6	325	Bifunctional nuclease 1 O	yes	no	0.966	0.987	0.705	1e-131
Q93VH2	329	Bifunctional nuclease 2 O	no	no	0.987	0.996	0.669	1e-127
Q6YZM6	325	Bifunctional nuclease 2 O	yes	no	0.951	0.972	0.551	2e-98
Q09LL3	331	Bifunctional nuclease OS=	N/A	no	0.969	0.972	0.495	3e-77
Q5N8J3	331	Bifunctional nuclease 1 O	no	no	0.969	0.972	0.495	8e-77
B8A8D2	331	Bifunctional nuclease 1 O	N/A	no	0.969	0.972	0.495	4e-76

>sp|Q9FWS6|BBD1_ARATH Bifunctional nuclease 1 OS=Arabidopsis thaliana GN=BBD1 PE=2 SV=1

 Score =  466 bits (1200), Expect = e-131,   Method: Compositional matrix adjust.
 Identities = 237/336 (70%), Positives = 269/336 (80%), Gaps = 15/336 (4%)

Query: 1   MGSLQGPVFCPAVRARQ-GGLYNTVPSTGPVMKARFFRSELWG--FKGLTAVKTKVGVFT 57
           M S+Q PV CPA+R RQ G   + V  TG  +K R   S+ WG   KG+ +  T   +  
Sbjct: 1   MRSVQAPVVCPAIRPRQVGACASLVNYTG--LKPR---SQFWGNRTKGVKSQGTTTTITL 55

Query: 58  RQQNARKCKIVQCTFSSSSNGNGSMAENFNENDEDFVNSSVVEAVEVKSGADGFMIKMRD 117
           R  N    K ++C FSS S+GNGS AENFNENDE++VNSSVVEAVEVKSGADGFM+KMRD
Sbjct: 56  RLCN----KSIKCVFSSHSDGNGSTAENFNENDEEYVNSSVVEAVEVKSGADGFMVKMRD 111

Query: 118 GRHLRCVHNNPQGGHLPDYAPHPAIVLKMEDGTGLLLPIIV-RTRDAKRVAYGGNAQCAN 176
           GR LRCVHNNPQGGHLPDYAPHPAIVLKMEDGTGLLLPIIV        +A   N Q A 
Sbjct: 112 GRQLRCVHNNPQGGHLPDYAPHPAIVLKMEDGTGLLLPIIVLEMPSVLLMAAMTNVQIA- 170

Query: 177 CRPTLYQVVKEMIEKMGYEVRLVRVTKRVHEAYFAQLYLTKVGNETECVSFDLRPSDAIN 236
            RPT+YQVVKEM++KMGYEVRLVRVTKRVHEAYFAQL+L+KVGN +ECVSFDLRPSDAIN
Sbjct: 171 -RPTMYQVVKEMVDKMGYEVRLVRVTKRVHEAYFAQLFLSKVGNASECVSFDLRPSDAIN 229

Query: 237 IAVRCKVPIQVNKYLAYSDGMRVIESGKLSTHSPGSDGLLFTELDKPSGQPCLDTKEFNL 296
           IAVRCK+PIQVNKYLAYSDGMRVIESGK+ST +P SDGLLFTE D+P+GQ CLDTKEFN+
Sbjct: 230 IAVRCKIPIQVNKYLAYSDGMRVIESGKISTPAPASDGLLFTEQDRPNGQACLDTKEFNI 289

Query: 297 VRNMLIAAVEERYRDAAQWRDKLGQLRAKRNLRKFT 332
           +  M+ A  EERY +AA+WRDKLGQ RAKRNLRK+T
Sbjct: 290 LSKMMQAVDEERYDEAAEWRDKLGQFRAKRNLRKYT 325

Bifunctional nuclease with both RNase and DNase activites. Involved in basal defense response. Participates in abscisic acid-derived callose deposition following infection by a necrotrophic pathogen.
Arabidopsis thaliana (taxid: 3702)
EC: 3EC: .EC: 1EC: .EC: -EC: .EC: -

>sp|Q93VH2|BBD2_ARATH Bifunctional nuclease 2 OS=Arabidopsis thaliana GN=BBD2 PE=2 SV=1

 Score =  454 bits (1169), Expect = e-127,   Method: Compositional matrix adjust.
 Identities = 223/333 (66%), Positives = 265/333 (79%), Gaps = 5/333 (1%)

Query: 1   MGSLQGPVFCPAVRARQGGLYNTVPSTGPVMKARFFRSELWGFKGLTAVKTKVGVFTRQQ 60
           M SLQ PV CP+VR RQ G+   + +   V K R  R + WG +     K++      + 
Sbjct: 1   MRSLQAPVVCPSVRPRQLGVSALLVNCS-VSKTRSLRKQFWGNQTKND-KSQAATVNLRL 58

Query: 61  NARKCKIVQCTFSSSSNGNGSMAENFNENDEDFVNSSVVEAVEVKSGADGFMIKMRDGRH 120
           + R+ K ++C FSS S+G GS AENFNENDED+V SSV+EAVEVKSG DGFM+KM+DGR 
Sbjct: 59  HLRRYKSIKCLFSSHSDGTGSTAENFNENDEDYVKSSVLEAVEVKSGPDGFMVKMKDGRQ 118

Query: 121 LRCVHNNPQGGHLPDYAPHPAIVLKMEDGTGLLLPIIV-RTRDAKRVAYGGNAQCANCRP 179
           LRCVHNNPQGG+LP+YAPH AIVLKMEDGTGLLLPIIV        +A   N Q A  RP
Sbjct: 119 LRCVHNNPQGGNLPNYAPHSAIVLKMEDGTGLLLPIIVLEMPSVLLMAAMTNVQIA--RP 176

Query: 180 TLYQVVKEMIEKMGYEVRLVRVTKRVHEAYFAQLYLTKVGNETECVSFDLRPSDAINIAV 239
           T+YQVVK+M++KMGYEVRLVRVT RVHEAYFA+LYL+KVG++++CVSFDLRPSDAINIAV
Sbjct: 177 TMYQVVKDMVDKMGYEVRLVRVTTRVHEAYFAELYLSKVGDKSDCVSFDLRPSDAINIAV 236

Query: 240 RCKVPIQVNKYLAYSDGMRVIESGKLSTHSPGSDGLLFTELDKPSGQPCLDTKEFNLVRN 299
           RCKVPIQVNKYLAYSDGMRVI+SGKLS  +P SDGLLFTELD+P+GQPC DTKEF+LVRN
Sbjct: 237 RCKVPIQVNKYLAYSDGMRVIDSGKLSKQTPASDGLLFTELDRPNGQPCFDTKEFDLVRN 296

Query: 300 MLIAAVEERYRDAAQWRDKLGQLRAKRNLRKFT 332
           M+ A  EERY +AA+WRDKLG+ +AKR LRK+T
Sbjct: 297 MMQAVDEERYDEAAEWRDKLGKFQAKRKLRKYT 329

Bifunctional nuclease with both RNase and DNase activites. Involved in basal defense response. Participates in abscisic acid-derived callose deposition following infection by a necrotrophic pathogen.

Arabidopsis thaliana (taxid: 3702)

EC: 3

EC: .

EC: 1

EC: .

EC: -

EC: .

EC: -

>sp|Q6YZM6|BBD2_ORYSJ Bifunctional nuclease 2 OS=Oryza sativa subsp. japonica GN=BBD2 PE=2 SV=1

 Score =  358 bits (920), Expect = 2e-98,   Method: Compositional matrix adjust.
 Identities = 181/328 (55%), Positives = 245/328 (74%), Gaps = 12/328 (3%)

Query: 3   SLQGPVFCPAVRARQ---GGLYNTVPSTGPVMKARFFRSELWGFKGLTAVKTKVGVFTRQ 59
           +++GP+ C AV   +     + N++  +G +  A  F   +  ++ +T + + +    ++
Sbjct: 2   AMEGPILCRAVMQAKLPVTMISNSLTKSGQLGTA--FLGCVCKYRNITRLISPIYQPAQK 59

Query: 60  QNARKCKIVQCTFSSSSNGNGSMAENFNENDEDFVNSSVVEAVEVKSGADGFMIKMRDGR 119
             A  C     +FSSSS+GNG MA NF+E+DED+VNS+V+EAVEV+SGA+G++IKMRDG+
Sbjct: 60  NFATVCG----SFSSSSDGNGYMAGNFSESDEDYVNSTVLEAVEVRSGAEGYVIKMRDGK 115

Query: 120 HLRCVHNNPQGGHLPDYAPHPAIVLKMEDGTGLLLPIIV-RTRDAKRVAYGGNAQCANCR 178
           +LRCVHNN QG ++P+ AP PAIVL++EDG+  LLPIIV        +A   N   A  R
Sbjct: 116 NLRCVHNNSQGRNIPESAPQPAIVLRIEDGSETLLPIIVLEMPSVLLMAAIRNVHIA--R 173

Query: 179 PTLYQVVKEMIEKMGYEVRLVRVTKRVHEAYFAQLYLTKVGNETECVSFDLRPSDAINIA 238
           PT+YQVVKEMI+KMGYEV+LVR+ KR+ EAY A+L+LTKVG+ TE ++FDLRPSDAINIA
Sbjct: 174 PTIYQVVKEMIDKMGYEVKLVRINKRIQEAYCAELFLTKVGDHTESITFDLRPSDAINIA 233

Query: 239 VRCKVPIQVNKYLAYSDGMRVIESGKLSTHSPGSDGLLFTELDKPSGQPCLDTKEFNLVR 298
           VRCKVPIQV++ LAYSDG+R +E  +++  +  SDGLLFTELD+P GQPC++ +EF L+R
Sbjct: 234 VRCKVPIQVHRSLAYSDGIRSVEPARMAIAAGMSDGLLFTELDRPDGQPCVEAQEFGLIR 293

Query: 299 NMLIAAVEERYRDAAQWRDKLGQLRAKR 326
           NMLIAAVEERY+DAA WRDKL  LR+KR
Sbjct: 294 NMLIAAVEERYKDAATWRDKLMLLRSKR 321

Bifunctional nuclease with both RNase and DNase activites. Involved in basal defense response. Participates in abscisic acid-derived callose deposition following infection by a necrotrophic pathogen.

Oryza sativa subsp. japonica (taxid: 39947)

EC: 3

EC: .

EC: 1

EC: .

EC: -

EC: .

EC: -

>sp|Q09LL3|BBD_ORYMI Bifunctional nuclease OS=Oryza minuta GN=BBD PE=2 SV=1

 Score =  288 bits (738), Expect = 3e-77,   Method: Compositional matrix adjust.
 Identities = 164/331 (49%), Positives = 228/331 (68%), Gaps = 9/331 (2%)

Query: 1   MGSLQGPVFCPAVRARQGGLYNTVPSTGPVMKARFFRSELWGFKG--LTAVKTKVGVFTR 58
           M  + GPV         G L +    +G +++    R    G +G    A +   G F  
Sbjct: 1   MEIINGPVLPRYAAPATGALTSDAKISGQLLRRVHLRRRACGLQGDHYRAARRFFG-FPS 59

Query: 59  QQNARKCKI--VQCTFSSSSNGNGSMAENFNENDEDFVNSSVVEAVEVKSGADGFMIKMR 116
           +++AR   +  V C++ SSS+G+G+ A +++ + E+FVNSSV+EAVE++S +DGF+IKMR
Sbjct: 60  ERHARSGWVWPVYCSYGSSSDGDGAAAADYDASGEEFVNSSVMEAVELRSVSDGFVIKMR 119

Query: 117 DGRHLRCVHNNPQGGHLPDYAPHPAIVLKMEDGTGLLLPIIV-RTRDAKRVAYGGNAQCA 175
           DG++LRCV NNP+   L D APH AIVLKMEDG+ LLLPIIV  T     +A   N +  
Sbjct: 120 DGKNLRCVQNNPRVLRLRDSAPHHAIVLKMEDGSDLLLPIIVMETPSIMLLAALRNIRIP 179

Query: 176 NCRPTLYQVVKEMIEKMGYEVRLVRVTKRVHEAYFAQLYLTKVGNETECVSFDLRPSDAI 235
             RPT+Y VVKEM E+MGY VRLVR+T+ VH+AY+++LYL K+GNE E +S DL+PSDAI
Sbjct: 180 --RPTIYNVVKEMTERMGYAVRLVRITEMVHDAYYSRLYLAKIGNEEETISLDLKPSDAI 237

Query: 236 NIAVRCKVPIQVNKYLAYSDGMRVIESGKLSTHSPGSDGLLFTELDKPSGQPCLDTKEFN 295
           NIA RCKVPIQVN+ +AY++G++V++     ++   SD   +T LD+P  QPC + +EF+
Sbjct: 238 NIAFRCKVPIQVNRRIAYNNGLKVVQPTPSESYV-SSDQFQYTRLDRPDDQPCFEAQEFD 296

Query: 296 LVRNMLIAAVEERYRDAAQWRDKLGQLRAKR 326
           LVRNML+AAVEERY+DAAQ+RD+L   RAK+
Sbjct: 297 LVRNMLVAAVEERYKDAAQYRDQLFMFRAKK 327

Bifunctional nuclease with both RNase and DNase activites. Involved in basal defense response. Participates in abscisic acid-derived callose deposition following infection by a necrotrophic pathogen.

Oryza minuta (taxid: 63629)

EC: 3

EC: .

EC: 1

EC: .

EC: -

EC: .

EC: -

>sp|Q5N8J3|BBD1_ORYSJ Bifunctional nuclease 1 OS=Oryza sativa subsp. japonica GN=BBD1 PE=2 SV=1

 Score =  287 bits (734), Expect = 8e-77,   Method: Compositional matrix adjust.
 Identities = 164/331 (49%), Positives = 228/331 (68%), Gaps = 9/331 (2%)

Query: 1   MGSLQGPVFCPAVRARQGGLYNTVPSTGPVMKARFFRSELWGFKG--LTAVKTKVGVFTR 58
           M  + GPV         G L +    +G +++    R    G +G    A +   G F  
Sbjct: 1   MEIINGPVLPRYAAPATGALTSDAKISGQLLRRVHLRRRACGLQGDHYRAARRFFG-FPS 59

Query: 59  QQNARKCKI--VQCTFSSSSNGNGSMAENFNENDEDFVNSSVVEAVEVKSGADGFMIKMR 116
           +++AR   +  V C++ SSS+G+G+ A +++ + E+FVNSSV+EAVE++S +DGF+IKMR
Sbjct: 60  ERHARSGWVWPVCCSYGSSSDGDGAAAADYDASGEEFVNSSVMEAVELRSVSDGFVIKMR 119

Query: 117 DGRHLRCVHNNPQGGHLPDYAPHPAIVLKMEDGTGLLLPIIV-RTRDAKRVAYGGNAQCA 175
           DG++LRCV NNP+   L D APH AIVLKMEDG+ LLLPIIV  T     +A   N +  
Sbjct: 120 DGKNLRCVQNNPRVLRLRDSAPHHAIVLKMEDGSDLLLPIIVMETPSIMLLAALRNIRIP 179

Query: 176 NCRPTLYQVVKEMIEKMGYEVRLVRVTKRVHEAYFAQLYLTKVGNETECVSFDLRPSDAI 235
             RPT+Y VVKEM E+MGY VRLVR+T+ VH+AY+++LYL K+GNE E +S DL+PSDAI
Sbjct: 180 --RPTIYNVVKEMTERMGYAVRLVRITEMVHDAYYSRLYLAKIGNEEETISLDLKPSDAI 237

Query: 236 NIAVRCKVPIQVNKYLAYSDGMRVIESGKLSTHSPGSDGLLFTELDKPSGQPCLDTKEFN 295
           NIA RCKVPIQVN+ +AY++G++V++     ++   SD   +T LD+P  QPC + +EF+
Sbjct: 238 NIAFRCKVPIQVNRRIAYNNGLKVVQPTPSESYV-SSDQFQYTRLDRPDDQPCFEAQEFD 296

Query: 296 LVRNMLIAAVEERYRDAAQWRDKLGQLRAKR 326
           LVRNML+AAVEERY+DAAQ+RD+L   RAK+
Sbjct: 297 LVRNMLVAAVEERYKDAAQYRDQLFMFRAKK 327

Bifunctional nuclease with both RNase and DNase activites. Involved in basal defense response. Participates in abscisic acid-derived callose deposition following infection by a necrotrophic pathogen.

Oryza sativa subsp. japonica (taxid: 39947)

EC: 3

EC: .

EC: 1

EC: .

EC: -

EC: .

EC: -

>sp|B8A8D2|BBD1_ORYSI Bifunctional nuclease 1 OS=Oryza sativa subsp. indica GN=BBD1 PE=3 SV=1

 Score =  285 bits (728), Expect = 4e-76,   Method: Compositional matrix adjust.
 Identities = 164/331 (49%), Positives = 227/331 (68%), Gaps = 9/331 (2%)

Query: 1   MGSLQGPVFCPAVRARQGGLYNTVPSTGPVMKARFFRSELWGFKG--LTAVKTKVGVFTR 58
           M  + GPV         G L +    +G +++    R    G +G    A +   G F  
Sbjct: 1   MEIINGPVLPRYAAPATGALTSDAKISGQLLRRVHLRRRACGLQGDHYRAARRFFG-FPS 59

Query: 59  QQNARKCKI--VQCTFSSSSNGNGSMAENFNENDEDFVNSSVVEAVEVKSGADGFMIKMR 116
           +++AR   +  V C++ SSS+G+G+ A +++ + E+FVNSSV+EAVE++S +DGF+IKMR
Sbjct: 60  ERHARSGWVWPVCCSYGSSSDGDGAAAADYDASGEEFVNSSVMEAVELRSVSDGFVIKMR 119

Query: 117 DGRHLRCVHNNPQGGHLPDYAPHPAIVLKMEDGTGLLLPIIV-RTRDAKRVAYGGNAQCA 175
           DG++LRCV NNP+   L D APH AIVLKMEDG+ LLLPIIV  T     +A   N +  
Sbjct: 120 DGKNLRCVQNNPRVLRLRDSAPHHAIVLKMEDGSDLLLPIIVMETPSIMLLAALRNIRIP 179

Query: 176 NCRPTLYQVVKEMIEKMGYEVRLVRVTKRVHEAYFAQLYLTKVGNETECVSFDLRPSDAI 235
             RPT+Y VVKEM E+MGY VRLVR+T+ VH+AY+++LYL K+GNE E +S DL+PSDAI
Sbjct: 180 --RPTIYNVVKEMTERMGYAVRLVRITEMVHDAYYSRLYLAKIGNEEETISLDLKPSDAI 237

Query: 236 NIAVRCKVPIQVNKYLAYSDGMRVIESGKLSTHSPGSDGLLFTELDKPSGQPCLDTKEFN 295
           NIA RCKVPIQVN+ +AY++G++V++     ++   SD    T LD+P  QPC + +EF+
Sbjct: 238 NIAFRCKVPIQVNRRIAYNNGLKVVQPTPSESYV-SSDQFQCTRLDRPDDQPCFEAQEFD 296

Query: 296 LVRNMLIAAVEERYRDAAQWRDKLGQLRAKR 326
           LVRNML+AAVEERY+DAAQ+RD+L   RAK+
Sbjct: 297 LVRNMLVAAVEERYKDAAQYRDQLFMFRAKK 327

Bifunctional nuclease with both RNase and DNase activites. Involved in basal defense response. Participates in abscisic acid-derived callose deposition following infection by a necrotrophic pathogen.

Oryza sativa subsp. indica (taxid: 39946)

EC: 3

EC: .

EC: 1

EC: .

EC: -

EC: .

EC: -

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	332
224062099	326	predicted protein [Populus trichocarpa]	0.978	0.996	0.786	1e-149
255538728	327	conserved hypothetical protein [Ricinus	0.981	0.996	0.789	1e-146
359492154	327	PREDICTED: uncharacterized protein LOC10	0.975	0.990	0.771	1e-146
302142539	355	unnamed protein product [Vitis vinifera]	0.975	0.912	0.771	1e-145
224085706	328	predicted protein [Populus trichocarpa]	0.981	0.993	0.760	1e-142
449511603	327	PREDICTED: bifunctional nuclease 1-like	0.978	0.993	0.720	1e-136
449460235	327	PREDICTED: bifunctional nuclease 1-like	0.978	0.993	0.717	1e-135
147842247	964	hypothetical protein VITISV_009514 [Viti	0.879	0.302	0.723	1e-133
255635435	328	unknown [Glycine max]	0.972	0.984	0.716	1e-131
15222221	325	bifunctional nuclease in basal defense r	0.966	0.987	0.705	1e-129

>gi|224062099|ref|XP_002300754.1| predicted protein [Populus trichocarpa] gi|222842480|gb|EEE80027.1| predicted protein [Populus trichocarpa]

 Score =  534 bits (1375), Expect = e-149,   Method: Compositional matrix adjust.
 Identities = 262/333 (78%), Positives = 286/333 (85%), Gaps = 8/333 (2%)

Query: 1   MGSLQGPVFCPAVRARQGGLYNTVPSTGPVMKARFFRSELWGFKGLTAVKTKVGVFTRQQ 60
           M SLQGPV CP VRA+Q G +   P TGP++KAR  RSELWGFKG    KTKVG+ +RQ 
Sbjct: 1   MVSLQGPVICPTVRAKQAGKH-AFPMTGPLVKARLVRSELWGFKGY---KTKVGLTSRQL 56

Query: 61  NARKCKIVQCTFSSSSNGNGSMAENFNENDEDFVNSSVVEAVEVKSGADGFMIKMRDGRH 120
            AR+C  VQC+ SSSS+GNGS AENFNENDED+VNSSVVEAVEVKSG+DGF+IKMRDGRH
Sbjct: 57  KARRCNTVQCSLSSSSDGNGSTAENFNENDEDYVNSSVVEAVEVKSGSDGFVIKMRDGRH 116

Query: 121 LRCVHNNPQGGHLPDYAPHPAIVLKMEDGTGLLLPIIV-RTRDAKRVAYGGNAQCANCRP 179
           LRCVHNNPQGGHLPDYAPHPAIVLKMEDGTGLLLPIIV        +A   N Q A  RP
Sbjct: 117 LRCVHNNPQGGHLPDYAPHPAIVLKMEDGTGLLLPIIVLEMPSVLLMAAVRNVQIA--RP 174

Query: 180 TLYQVVKEMIEKMGYEVRLVRVTKRVHEAYFAQLYLTKVGNETECVSFDLRPSDAINIAV 239
           T+YQVVK+M+EKMG+EV+LVRVTKRVHEAYFAQLYLTK+GNETECVSFDLRPSDAINIAV
Sbjct: 175 TMYQVVKDMVEKMGFEVKLVRVTKRVHEAYFAQLYLTKIGNETECVSFDLRPSDAINIAV 234

Query: 240 RCKVPIQVNKYLAYSDGMRVIESGKLSTHSPGSDGLLFTELDKPSGQPCLDTKEFNLVRN 299
           RCKVPIQVNKYLAYSDGMRVIESGK    SP SDG+LFTELD+P+GQPCLDTKEFNLVRN
Sbjct: 235 RCKVPIQVNKYLAYSDGMRVIESGK-PIQSPASDGILFTELDRPTGQPCLDTKEFNLVRN 293

Query: 300 MLIAAVEERYRDAAQWRDKLGQLRAKRNLRKFT 332
           M  AA EERY DAAQWRDKLGQ RAKRNL+K+T
Sbjct: 294 MFTAAFEERYGDAAQWRDKLGQFRAKRNLKKYT 326

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255538728|ref|XP_002510429.1| conserved hypothetical protein [Ricinus communis] gi|223551130|gb|EEF52616.1| conserved hypothetical protein [Ricinus communis]

 Score =  524 bits (1350), Expect = e-146,   Method: Compositional matrix adjust.
 Identities = 263/333 (78%), Positives = 285/333 (85%), Gaps = 7/333 (2%)

Query: 1   MGSLQGPVFCPAVRARQGGLYNTVPSTGPVMKARFFRSELWGFKGLTAVKTKVGVFTRQQ 60
           M SLQGPV CPAVRA+Q G Y T+P   P+ KAR  RS LW FKG++  KTK+  F+ QQ
Sbjct: 1   MTSLQGPVICPAVRAKQAGTY-TLPLNVPLFKARLVRSGLWRFKGISDYKTKLTGFSPQQ 59

Query: 61  NARKCKIVQCTFSSSSNGNGSMAENFNENDEDFVNSSVVEAVEVKSGADGFMIKMRDGRH 120
            AR   + QC  SSSSNGNG+ AENFN NDED+V+SSVVEAVEVKSGADGFMIKMRDGRH
Sbjct: 60  -ARNTTL-QCCLSSSSNGNGNTAENFNVNDEDYVHSSVVEAVEVKSGADGFMIKMRDGRH 117

Query: 121 LRCVHNNPQGGHLPDYAPHPAIVLKMEDGTGLLLPIIV-RTRDAKRVAYGGNAQCANCRP 179
           +RCVHNNPQGGHLPDYAPHPAIVLKMEDGTGLLLPIIV        +A   N Q A  RP
Sbjct: 118 VRCVHNNPQGGHLPDYAPHPAIVLKMEDGTGLLLPIIVLEMPSVLLMAAVRNVQIA--RP 175

Query: 180 TLYQVVKEMIEKMGYEVRLVRVTKRVHEAYFAQLYLTKVGNETECVSFDLRPSDAINIAV 239
           TLYQVVKEMIEKMGYEVRLVRVTKRVHEAYFAQLYLTKVGNET+CVSFDLRPSDAINIAV
Sbjct: 176 TLYQVVKEMIEKMGYEVRLVRVTKRVHEAYFAQLYLTKVGNETQCVSFDLRPSDAINIAV 235

Query: 240 RCKVPIQVNKYLAYSDGMRVIESGKLSTHSPGSDGLLFTELDKPSGQPCLDTKEFNLVRN 299
           RCKVPIQVNKYLAYSDGMRVIESGK+ THSPGSDGLLFTELD+P+GQPCLDTKEFNLV N
Sbjct: 236 RCKVPIQVNKYLAYSDGMRVIESGKI-THSPGSDGLLFTELDRPTGQPCLDTKEFNLVSN 294

Query: 300 MLIAAVEERYRDAAQWRDKLGQLRAKRNLRKFT 332
           ++ A VEERY+DAAQWRD LGQ RAKRNL+K+T
Sbjct: 295 LMNAVVEERYQDAAQWRDMLGQFRAKRNLKKYT 327

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359492154|ref|XP_003634371.1| PREDICTED: uncharacterized protein LOC100855103 [Vitis vinifera]

 Score =  522 bits (1345), Expect = e-146,   Method: Compositional matrix adjust.
 Identities = 253/328 (77%), Positives = 280/328 (85%), Gaps = 4/328 (1%)

Query: 1   MGSLQGPVFCPAVRARQGGLYNTVPSTGPVMKARFFRSELWGFKGLTAVKTKVGVFTRQQ 60
           MG+LQGPV CP VRA++ G+Y T+P + P+ K + FRS  WGF+G    +TK G    Q 
Sbjct: 1   MGTLQGPVICPTVRAKEAGVY-TLPVSLPLKKTKIFRSGFWGFRGNCGGRTKAGSVPHQL 59

Query: 61  NARKCKIVQCTFSSSSNGNGSMAENFNENDEDFVNSSVVEAVEVKSGADGFMIKMRDGRH 120
           + RKCK +QC+FSSSS+GNGSMAENFNENDED+VNSSVVEAVEVKSGADGFMIKMRDGRH
Sbjct: 60  HTRKCKTLQCSFSSSSDGNGSMAENFNENDEDYVNSSVVEAVEVKSGADGFMIKMRDGRH 119

Query: 121 LRCVHNNPQGGHLPDYAPHPAIVLKMEDGTGLLLPIIV-RTRDAKRVAYGGNAQCANCRP 179
           LRCVHNNPQGGH+PDYAPHPAIVLKMEDGTGLLLPIIV        +A   N Q A  RP
Sbjct: 120 LRCVHNNPQGGHMPDYAPHPAIVLKMEDGTGLLLPIIVLEMPSVLLMAAVRNVQIA--RP 177

Query: 180 TLYQVVKEMIEKMGYEVRLVRVTKRVHEAYFAQLYLTKVGNETECVSFDLRPSDAINIAV 239
           TLYQV+KEMI+KMGY V+LVRVTKRVHEAYFAQLYLTKVGNE E VSFDLRPSDAINIAV
Sbjct: 178 TLYQVMKEMIDKMGYAVKLVRVTKRVHEAYFAQLYLTKVGNEKESVSFDLRPSDAINIAV 237

Query: 240 RCKVPIQVNKYLAYSDGMRVIESGKLSTHSPGSDGLLFTELDKPSGQPCLDTKEFNLVRN 299
           RCKVPIQVNKYLAYSDGMRVIES K+S  +  SDGLLFTELD+PSGQPC++TKEF+LVRN
Sbjct: 238 RCKVPIQVNKYLAYSDGMRVIESAKVSVQASSSDGLLFTELDRPSGQPCIETKEFDLVRN 297

Query: 300 MLIAAVEERYRDAAQWRDKLGQLRAKRN 327
           MLIAAVEERYRDAAQWRDKL Q R+KRN
Sbjct: 298 MLIAAVEERYRDAAQWRDKLTQFRSKRN 325

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|302142539|emb|CBI19742.3| unnamed protein product [Vitis vinifera]

 Score =  522 bits (1344), Expect = e-145,   Method: Compositional matrix adjust.
 Identities = 253/328 (77%), Positives = 280/328 (85%), Gaps = 4/328 (1%)

Query: 1   MGSLQGPVFCPAVRARQGGLYNTVPSTGPVMKARFFRSELWGFKGLTAVKTKVGVFTRQQ 60
           MG+LQGPV CP VRA++ G+Y T+P + P+ K + FRS  WGF+G    +TK G    Q 
Sbjct: 29  MGTLQGPVICPTVRAKEAGVY-TLPVSLPLKKTKIFRSGFWGFRGNCGGRTKAGSVPHQL 87

Query: 61  NARKCKIVQCTFSSSSNGNGSMAENFNENDEDFVNSSVVEAVEVKSGADGFMIKMRDGRH 120
           + RKCK +QC+FSSSS+GNGSMAENFNENDED+VNSSVVEAVEVKSGADGFMIKMRDGRH
Sbjct: 88  HTRKCKTLQCSFSSSSDGNGSMAENFNENDEDYVNSSVVEAVEVKSGADGFMIKMRDGRH 147

Query: 121 LRCVHNNPQGGHLPDYAPHPAIVLKMEDGTGLLLPIIV-RTRDAKRVAYGGNAQCANCRP 179
           LRCVHNNPQGGH+PDYAPHPAIVLKMEDGTGLLLPIIV        +A   N Q A  RP
Sbjct: 148 LRCVHNNPQGGHMPDYAPHPAIVLKMEDGTGLLLPIIVLEMPSVLLMAAVRNVQIA--RP 205

Query: 180 TLYQVVKEMIEKMGYEVRLVRVTKRVHEAYFAQLYLTKVGNETECVSFDLRPSDAINIAV 239
           TLYQV+KEMI+KMGY V+LVRVTKRVHEAYFAQLYLTKVGNE E VSFDLRPSDAINIAV
Sbjct: 206 TLYQVMKEMIDKMGYAVKLVRVTKRVHEAYFAQLYLTKVGNEKESVSFDLRPSDAINIAV 265

Query: 240 RCKVPIQVNKYLAYSDGMRVIESGKLSTHSPGSDGLLFTELDKPSGQPCLDTKEFNLVRN 299
           RCKVPIQVNKYLAYSDGMRVIES K+S  +  SDGLLFTELD+PSGQPC++TKEF+LVRN
Sbjct: 266 RCKVPIQVNKYLAYSDGMRVIESAKVSVQASSSDGLLFTELDRPSGQPCIETKEFDLVRN 325

Query: 300 MLIAAVEERYRDAAQWRDKLGQLRAKRN 327
           MLIAAVEERYRDAAQWRDKL Q R+KRN
Sbjct: 326 MLIAAVEERYRDAAQWRDKLTQFRSKRN 353

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224085706|ref|XP_002307674.1| predicted protein [Populus trichocarpa] gi|222857123|gb|EEE94670.1| predicted protein [Populus trichocarpa]

 Score =  510 bits (1313), Expect = e-142,   Method: Compositional matrix adjust.
 Identities = 254/334 (76%), Positives = 283/334 (84%), Gaps = 8/334 (2%)

Query: 1   MGSLQGPVFCPAVRARQGGLYNTVPSTGPVMKARFFRSELWGFKGLTAVKTKVGVFTRQQ 60
           MGSLQGPV  PAVRA+Q G Y + P TGP++K    RSEL GFKGL+  K+KV + +RQ 
Sbjct: 1   MGSLQGPVIYPAVRAKQAGTY-SFPMTGPLVKGWLIRSELRGFKGLSGCKSKVVLTSRQL 59

Query: 61  NARKCKIVQCTFSSSSNGNGSMAENFNENDEDFVNSSVVEAVEVKSGADGFMIKMRDGRH 120
            AR+C +VQC+ SSSS+GNGS AENFNEN  D+VNSSVVEAVEVKSG+DGF+IKMRDGRH
Sbjct: 60  KARRCSVVQCSLSSSSDGNGSTAENFNENHGDYVNSSVVEAVEVKSGSDGFVIKMRDGRH 119

Query: 121 LRCVHNNPQGGHLPDYAPHPAIVLKMEDGTGLLLPIIV-RTRDAKRVAYGGNAQCANCRP 179
           LRCVHNNPQGGHLPD APHPAIVLKMEDGTGLLLPIIV        +A   N Q A  RP
Sbjct: 120 LRCVHNNPQGGHLPDNAPHPAIVLKMEDGTGLLLPIIVLEMPSVLLMAAVRNVQIA--RP 177

Query: 180 TLYQVVKEMIEKMGYEVRLVRVTKRVHEAYFAQLYLTKVGNETECVSFDLRPSDAINIAV 239
           T+YQVVKEM+EKMGYEV+LVRVTKRVHEAYFAQLYLTK+GNETECVSFDLRPSDAINIAV
Sbjct: 178 TMYQVVKEMVEKMGYEVKLVRVTKRVHEAYFAQLYLTKIGNETECVSFDLRPSDAINIAV 237

Query: 240 RCKVPIQVNKYLAYSDGMRVIESGKLSTHS-PGSDGLLFTELDKPSGQPCLDTKEFNLVR 298
           RCKVPIQVNKYLAYSDGMRV+    L  +S P  +GLLFTELD+P+GQPCLDTKEF+LVR
Sbjct: 238 RCKVPIQVNKYLAYSDGMRVMN---LKANSVPCFNGLLFTELDRPTGQPCLDTKEFDLVR 294

Query: 299 NMLIAAVEERYRDAAQWRDKLGQLRAKRNLRKFT 332
           NML AA+EERY DAAQWRDKLGQ RAKRNL+K+T
Sbjct: 295 NMLTAAIEERYGDAAQWRDKLGQFRAKRNLKKYT 328

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449511603|ref|XP_004164003.1| PREDICTED: bifunctional nuclease 1-like [Cucumis sativus]

 Score =  490 bits (1262), Expect = e-136,   Method: Compositional matrix adjust.
 Identities = 237/329 (72%), Positives = 274/329 (83%), Gaps = 4/329 (1%)

Query: 1   MGSLQGPVFCPAVRARQGGLYNTVPSTGPVMKARFFRSELWGFKGLTAVKTKVGVFTRQQ 60
           MGSLQGPV CP + A+Q G + ++P    +M   F R +LWGF G+  +  K+   + ++
Sbjct: 1   MGSLQGPVVCPTICAKQAG-FCSLPINRSLMAFSFRRGQLWGFTGINGLNAKLPAISLKR 59

Query: 61  NARKCKIVQCTFSSSSNGNGSMAENFNENDEDFVNSSVVEAVEVKSGADGFMIKMRDGRH 120
             RKCK ++C+FSSSS+ NGS AENFNE +E++V SSVVEAVEVKSGADGF+IKMRDGRH
Sbjct: 60  CTRKCKTLRCSFSSSSDDNGSTAENFNEKNEEYVESSVVEAVEVKSGADGFVIKMRDGRH 119

Query: 121 LRCVHNNPQGGHLPDYAPHPAIVLKMEDGTGLLLPIIV-RTRDAKRVAYGGNAQCANCRP 179
           LRCVHNNP GGHLPDYAPHPAIVLKMEDGTGLLLPIIV        +A   N   A  RP
Sbjct: 120 LRCVHNNPHGGHLPDYAPHPAIVLKMEDGTGLLLPIIVLEMPSVLLMAAVRNVPIA--RP 177

Query: 180 TLYQVVKEMIEKMGYEVRLVRVTKRVHEAYFAQLYLTKVGNETECVSFDLRPSDAINIAV 239
           T+YQVVKEMI+KMGYEV+LVRVTKRVHEAYFAQLYL+K+G ET+C+SFDLRPSDAINIAV
Sbjct: 178 TMYQVVKEMIDKMGYEVKLVRVTKRVHEAYFAQLYLSKIGCETDCLSFDLRPSDAINIAV 237

Query: 240 RCKVPIQVNKYLAYSDGMRVIESGKLSTHSPGSDGLLFTELDKPSGQPCLDTKEFNLVRN 299
           RC+VPIQVNKYLAYSDGMRV+ESGKLST +  +DGLLFTELD+PSGQPC++ KEFNLVRN
Sbjct: 238 RCQVPIQVNKYLAYSDGMRVVESGKLSTQALATDGLLFTELDRPSGQPCVEAKEFNLVRN 297

Query: 300 MLIAAVEERYRDAAQWRDKLGQLRAKRNL 328
           MLIAAVEERYRDAAQWRDKL  LRA+RNL
Sbjct: 298 MLIAAVEERYRDAAQWRDKLNLLRARRNL 326

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449460235|ref|XP_004147851.1| PREDICTED: bifunctional nuclease 1-like [Cucumis sativus]

 Score =  489 bits (1258), Expect = e-135,   Method: Compositional matrix adjust.
 Identities = 236/329 (71%), Positives = 274/329 (83%), Gaps = 4/329 (1%)

Query: 1   MGSLQGPVFCPAVRARQGGLYNTVPSTGPVMKARFFRSELWGFKGLTAVKTKVGVFTRQQ 60
           MGSLQGPV CP + A+Q G + ++P    +M   F R +LWGF G+  +  K+   + ++
Sbjct: 1   MGSLQGPVVCPTICAKQAG-FCSLPINRSLMAFSFRRGQLWGFTGINGLNAKLPAISLKR 59

Query: 61  NARKCKIVQCTFSSSSNGNGSMAENFNENDEDFVNSSVVEAVEVKSGADGFMIKMRDGRH 120
             RKCK ++C+FSSSS+ NGS AENFNE +E++V SSVVEAVEVKSGADGF+IKMRDGRH
Sbjct: 60  CTRKCKTLRCSFSSSSDDNGSTAENFNEKNEEYVESSVVEAVEVKSGADGFVIKMRDGRH 119

Query: 121 LRCVHNNPQGGHLPDYAPHPAIVLKMEDGTGLLLPIIV-RTRDAKRVAYGGNAQCANCRP 179
           LRCVHNNP GGHLPDYAPHPAIVLKMEDGTGLLLPIIV        +A   N   A  RP
Sbjct: 120 LRCVHNNPHGGHLPDYAPHPAIVLKMEDGTGLLLPIIVLEMPSVLLMAAVRNVPIA--RP 177

Query: 180 TLYQVVKEMIEKMGYEVRLVRVTKRVHEAYFAQLYLTKVGNETECVSFDLRPSDAINIAV 239
           T+YQVVKEMI+KMGYEV+LVRVTKRVHEAYFAQLYL+K+G ET+C+SFDLRPSDAINIAV
Sbjct: 178 TMYQVVKEMIDKMGYEVKLVRVTKRVHEAYFAQLYLSKIGCETDCLSFDLRPSDAINIAV 237

Query: 240 RCKVPIQVNKYLAYSDGMRVIESGKLSTHSPGSDGLLFTELDKPSGQPCLDTKEFNLVRN 299
           RC+VPIQVNKYLA+SDGMRV+ESGKLST +  +DGLLFTELD+PSGQPC++ KEFNLVRN
Sbjct: 238 RCQVPIQVNKYLAFSDGMRVVESGKLSTQALATDGLLFTELDRPSGQPCVEAKEFNLVRN 297

Query: 300 MLIAAVEERYRDAAQWRDKLGQLRAKRNL 328
           MLIAAVEERYRDAAQWRDKL  LRA+RNL
Sbjct: 298 MLIAAVEERYRDAAQWRDKLNLLRARRNL 326

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147842247|emb|CAN76215.1| hypothetical protein VITISV_009514 [Vitis vinifera]

 Score =  482 bits (1241), Expect = e-133,   Method: Compositional matrix adjust.
 Identities = 236/326 (72%), Positives = 261/326 (80%), Gaps = 34/326 (10%)

Query: 1   MGSLQGPVFCPAVRARQGGLYNTVPSTGPVMKARFFRSELWGFKGLTAVKTKVGVFTRQQ 60
           MG+LQGPV CP VRA++ G+Y T+P + P+ K + FRS  WGF+G    +TK G    Q 
Sbjct: 1   MGTLQGPVICPTVRAKEAGVY-TLPVSLPLKKTKIFRSGFWGFRGNCGGRTKAGXVPHQL 59

Query: 61  NARKCKIVQCTFSSSSNGNGSMAENFNENDEDFVNSSVVEAVEVKSGADGFMIKMRDGRH 120
           + RKCK +QC+FSSSS+GNGSMAENFNENDED+VNSSVVEAVEVKSGADGFMIKMRDGRH
Sbjct: 60  HTRKCKTLQCSFSSSSDGNGSMAENFNENDEDYVNSSVVEAVEVKSGADGFMIKMRDGRH 119

Query: 121 LRCVHNNPQGGHLPDYAPHPAIVLKMEDGTGLLLPIIVRTRDAKRVAYGGNAQCANCRPT 180
           LRCVHNNPQGGH+PDYAPHPAIVLKMEDGTGLLLPII                    RPT
Sbjct: 120 LRCVHNNPQGGHMPDYAPHPAIVLKMEDGTGLLLPII-------------------ARPT 160

Query: 181 LYQVVKEMIEKMGYEVRLVRVTKRVHEAYFAQLYLTK--------------VGNETECVS 226
           LYQV+KEMI+KMGY V+LVRVTKRVHEAYFAQLYLTK              VGNE E VS
Sbjct: 161 LYQVMKEMIDKMGYAVKLVRVTKRVHEAYFAQLYLTKAYSCCTPCSLIDCLVGNEKESVS 220

Query: 227 FDLRPSDAINIAVRCKVPIQVNKYLAYSDGMRVIESGKLSTHSPGSDGLLFTELDKPSGQ 286
           FDLRPSDAINIAVRCKVPIQVNKYLAYSDGMRVIES K+S  +  SDGLLFTELD+PSGQ
Sbjct: 221 FDLRPSDAINIAVRCKVPIQVNKYLAYSDGMRVIESAKVSVQASSSDGLLFTELDRPSGQ 280

Query: 287 PCLDTKEFNLVRNMLIAAVEERYRDA 312
           PC++TKEF+LVRNMLIAAVEERYRDA
Sbjct: 281 PCIETKEFDLVRNMLIAAVEERYRDA 306

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255635435|gb|ACU18070.1| unknown [Glycine max]

 Score =  472 bits (1215), Expect = e-131,   Method: Compositional matrix adjust.
 Identities = 237/331 (71%), Positives = 265/331 (80%), Gaps = 8/331 (2%)

Query: 1   MGSLQGPVFCPAVRARQGGLYNTVPSTGPV-MKARFFRSELWGFKGLTAVKTKVGVFTRQ 59
           M S+QGPV CP+VRA+Q G + ++P  G V M  R  RSE WG  G    K K G  +  
Sbjct: 1   MSSVQGPVVCPSVRAKQVG-FCSIPMIGAVKMNVRRIRSEFWGLNG---AKAKPGFLSCH 56

Query: 60  QNARKCKIVQCTFSSSSNGNGSMAENFNENDEDFVNSSVVEAVEVKSGADGFMIKMRDGR 119
            N RKCK V CTF+S SN +GS A+NFNE DED+V SSV+EAVEVKSGADGF+IKMRDGR
Sbjct: 57  INTRKCKTVHCTFNSPSNDSGSTADNFNEKDEDYVISSVIEAVEVKSGADGFIIKMRDGR 116

Query: 120 HLRCVHNNPQGGHLPDYAPHPAIVLKMEDGTGLLLPIIV-RTRDAKRVAYGGNAQCANCR 178
           HLRCVHNNPQGGHLPDYAPHPAIVLKMEDGTGLLLPIIV        +A   N   A  R
Sbjct: 117 HLRCVHNNPQGGHLPDYAPHPAIVLKMEDGTGLLLPIIVLEMPSVLLMAAIRNVPIA--R 174

Query: 179 PTLYQVVKEMIEKMGYEVRLVRVTKRVHEAYFAQLYLTKVGNETECVSFDLRPSDAINIA 238
           PTLYQVVKEMI+KMGYEV+ VRVT+RVHEAYFAQLYLTKVGN+ E VSFDLRPSDAINIA
Sbjct: 175 PTLYQVVKEMIDKMGYEVKFVRVTRRVHEAYFAQLYLTKVGNDAEYVSFDLRPSDAINIA 234

Query: 239 VRCKVPIQVNKYLAYSDGMRVIESGKLSTHSPGSDGLLFTELDKPSGQPCLDTKEFNLVR 298
           VRCKVPIQVNKYLAYSDGMRVIESGKLST  PG DG LFTE+D+PSGQPC +T EFNL+ 
Sbjct: 235 VRCKVPIQVNKYLAYSDGMRVIESGKLSTQFPGMDGRLFTEMDRPSGQPCAETTEFNLLH 294

Query: 299 NMLIAAVEERYRDAAQWRDKLGQLRAKRNLR 329
           NML A VEERY+DAA +RD+L QLRA +N++
Sbjct: 295 NMLKAVVEERYKDAALFRDQLNQLRAGKNMK 325

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|15222221|ref|NP_177671.1| bifunctional nuclease in basal defense response 1 [Arabidopsis thaliana] gi|30699096|ref|NP_849890.1| bifunctional nuclease in basal defense response 1 [Arabidopsis thaliana] gi|30699098|ref|NP_849891.1| bifunctional nuclease in basal defense response 1 [Arabidopsis thaliana] gi|75172895|sp|Q9FWS6.1|BBD1_ARATH RecName: Full=Bifunctional nuclease 1; Short=AtBBD1 gi|10120446|gb|AAG13071.1|AC023754_9 Unknown protein [Arabidopsis thaliana] gi|15809929|gb|AAL06892.1| At1g75380/F1B16_15 [Arabidopsis thaliana] gi|17978881|gb|AAL47412.1| At1g75380/F1B16_15 [Arabidopsis thaliana] gi|21593016|gb|AAM64965.1| wound-responsive protein, putative [Arabidopsis thaliana] gi|332197588|gb|AEE35709.1| bifunctional nuclease in basal defense response 1 [Arabidopsis thaliana] gi|332197589|gb|AEE35710.1| bifunctional nuclease in basal defense response 1 [Arabidopsis thaliana] gi|332197590|gb|AEE35711.1| bifunctional nuclease in basal defense response 1 [Arabidopsis thaliana]

 Score =  466 bits (1200), Expect = e-129,   Method: Compositional matrix adjust.
 Identities = 237/336 (70%), Positives = 269/336 (80%), Gaps = 15/336 (4%)

Query: 1   MGSLQGPVFCPAVRARQ-GGLYNTVPSTGPVMKARFFRSELWG--FKGLTAVKTKVGVFT 57
           M S+Q PV CPA+R RQ G   + V  TG  +K R   S+ WG   KG+ +  T   +  
Sbjct: 1   MRSVQAPVVCPAIRPRQVGACASLVNYTG--LKPR---SQFWGNRTKGVKSQGTTTTITL 55

Query: 58  RQQNARKCKIVQCTFSSSSNGNGSMAENFNENDEDFVNSSVVEAVEVKSGADGFMIKMRD 117
           R  N    K ++C FSS S+GNGS AENFNENDE++VNSSVVEAVEVKSGADGFM+KMRD
Sbjct: 56  RLCN----KSIKCVFSSHSDGNGSTAENFNENDEEYVNSSVVEAVEVKSGADGFMVKMRD 111

Query: 118 GRHLRCVHNNPQGGHLPDYAPHPAIVLKMEDGTGLLLPIIV-RTRDAKRVAYGGNAQCAN 176
           GR LRCVHNNPQGGHLPDYAPHPAIVLKMEDGTGLLLPIIV        +A   N Q A 
Sbjct: 112 GRQLRCVHNNPQGGHLPDYAPHPAIVLKMEDGTGLLLPIIVLEMPSVLLMAAMTNVQIA- 170

Query: 177 CRPTLYQVVKEMIEKMGYEVRLVRVTKRVHEAYFAQLYLTKVGNETECVSFDLRPSDAIN 236
            RPT+YQVVKEM++KMGYEVRLVRVTKRVHEAYFAQL+L+KVGN +ECVSFDLRPSDAIN
Sbjct: 171 -RPTMYQVVKEMVDKMGYEVRLVRVTKRVHEAYFAQLFLSKVGNASECVSFDLRPSDAIN 229

Query: 237 IAVRCKVPIQVNKYLAYSDGMRVIESGKLSTHSPGSDGLLFTELDKPSGQPCLDTKEFNL 296
           IAVRCK+PIQVNKYLAYSDGMRVIESGK+ST +P SDGLLFTE D+P+GQ CLDTKEFN+
Sbjct: 230 IAVRCKIPIQVNKYLAYSDGMRVIESGKISTPAPASDGLLFTEQDRPNGQACLDTKEFNI 289

Query: 297 VRNMLIAAVEERYRDAAQWRDKLGQLRAKRNLRKFT 332
           +  M+ A  EERY +AA+WRDKLGQ RAKRNLRK+T
Sbjct: 290 LSKMMQAVDEERYDEAAEWRDKLGQFRAKRNLRKYT 325

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	332
TAIR|locus:2018422	325	BBD1 "AT1G75380" [Arabidopsis	0.969	0.990	0.686	4.6e-112
TAIR|locus:2013164	329	BBD2 "bifunctional nuclease in	0.987	0.996	0.642	1.7e-107
TAIR|locus:2156842	340	AT5G66050 [Arabidopsis thalian	0.563	0.55	0.37	1.8e-25

TAIR|locus:2018422 BBD1 "AT1G75380" [Arabidopsis thaliana (taxid:3702)]

 Score = 1106 (394.4 bits), Expect = 4.6e-112, P = 4.6e-112
 Identities = 230/335 (68%), Positives = 260/335 (77%)

Query:     1 MGSLQGPVFCPAVRARQ-GGLYNTVPSTGPVMKARFFRSELWGFKGLTAVKTKVGVFTRQ 59
             M S+Q PV CPA+R RQ G   + V  TG  +K R   S+ WG +    VK++ G  T  
Sbjct:     1 MRSVQAPVVCPAIRPRQVGACASLVNYTG--LKPR---SQFWGNR-TKGVKSQ-GT-TTT 52

Query:    60 QNARKC-KIVQCTFSSSSNGNGSMAXXXXXXXXXXVNSSVVEAVEVKSGADGFMIKMRDG 118
                R C K ++C FSS S+GNGS A          VNSSVVEAVEVKSGADGFM+KMRDG
Sbjct:    53 ITLRLCNKSIKCVFSSHSDGNGSTAENFNENDEEYVNSSVVEAVEVKSGADGFMVKMRDG 112

Query:   119 RHLRCVHNNPQGGHLPDYAPHPAIVLKMEDGTGLLLPIIV-RTRDAKRVAYGGNAQCANC 177
             R LRCVHNNPQGGHLPDYAPHPAIVLKMEDGTGLLLPIIV        +A   N Q A  
Sbjct:   113 RQLRCVHNNPQGGHLPDYAPHPAIVLKMEDGTGLLLPIIVLEMPSVLLMAAMTNVQIA-- 170

Query:   178 RPTLYQVVKEMIEKMGYEVRLVRVTKRVHEAYFAQLYLTKVGNETECVSFDLRPSDAINI 237
             RPT+YQVVKEM++KMGYEVRLVRVTKRVHEAYFAQL+L+KVGN +ECVSFDLRPSDAINI
Sbjct:   171 RPTMYQVVKEMVDKMGYEVRLVRVTKRVHEAYFAQLFLSKVGNASECVSFDLRPSDAINI 230

Query:   238 AVRCKVPIQVNKYLAYSDGMRVIESGKLSTHSPGSDGLLFTELDKPSGQPCLDTKEFNLV 297
             AVRCK+PIQVNKYLAYSDGMRVIESGK+ST +P SDGLLFTE D+P+GQ CLDTKEFN++
Sbjct:   231 AVRCKIPIQVNKYLAYSDGMRVIESGKISTPAPASDGLLFTEQDRPNGQACLDTKEFNIL 290

Query:   298 RNMLIAAVEERYRDAAQWRDKLGQLRAKRNLRKFT 332
               M+ A  EERY +AA+WRDKLGQ RAKRNLRK+T
Sbjct:   291 SKMMQAVDEERYDEAAEWRDKLGQFRAKRNLRKYT 325

GO:0004518 "nuclease activity" evidence=IDA

GO:0050832 "defense response to fungus" evidence=IMP

GO:0031063 "regulation of histone deacetylation" evidence=IGI

GO:0043565 "sequence-specific DNA binding" evidence=IDA;IPI

GO:0045892 "negative regulation of transcription, DNA-dependent" evidence=IGI

TAIR|locus:2013164 BBD2 "bifunctional nuclease in basal defense response 2" [Arabidopsis thaliana (taxid:3702)]

 Score = 1063 (379.3 bits), Expect = 1.7e-107, P = 1.7e-107
 Identities = 214/333 (64%), Positives = 255/333 (76%)

Query:     1 MGSLQGPVFCPAVRARQGGLYNTVPSTGPVMKARFFRSELWGFKGLTAVKTKVGVFTRQQ 60
             M SLQ PV CP+VR RQ G+   + +   V K R  R + WG +     K++      + 
Sbjct:     1 MRSLQAPVVCPSVRPRQLGVSALLVNCS-VSKTRSLRKQFWGNQTKND-KSQAATVNLRL 58

Query:    61 NARKCKIVQCTFSSSSNGNGSMAXXXXXXXXXXVNSSVVEAVEVKSGADGFMIKMRDGRH 120
             + R+ K ++C FSS S+G GS A          V SSV+EAVEVKSG DGFM+KM+DGR 
Sbjct:    59 HLRRYKSIKCLFSSHSDGTGSTAENFNENDEDYVKSSVLEAVEVKSGPDGFMVKMKDGRQ 118

Query:   121 LRCVHNNPQGGHLPDYAPHPAIVLKMEDGTGLLLPIIV-RTRDAKRVAYGGNAQCANCRP 179
             LRCVHNNPQGG+LP+YAPH AIVLKMEDGTGLLLPIIV        +A   N Q A  RP
Sbjct:   119 LRCVHNNPQGGNLPNYAPHSAIVLKMEDGTGLLLPIIVLEMPSVLLMAAMTNVQIA--RP 176

Query:   180 TLYQVVKEMIEKMGYEVRLVRVTKRVHEAYFAQLYLTKVGNETECVSFDLRPSDAINIAV 239
             T+YQVVK+M++KMGYEVRLVRVT RVHEAYFA+LYL+KVG++++CVSFDLRPSDAINIAV
Sbjct:   177 TMYQVVKDMVDKMGYEVRLVRVTTRVHEAYFAELYLSKVGDKSDCVSFDLRPSDAINIAV 236

Query:   240 RCKVPIQVNKYLAYSDGMRVIESGKLSTHSPGSDGLLFTELDKPSGQPCLDTKEFNLVRN 299
             RCKVPIQVNKYLAYSDGMRVI+SGKLS  +P SDGLLFTELD+P+GQPC DTKEF+LVRN
Sbjct:   237 RCKVPIQVNKYLAYSDGMRVIDSGKLSKQTPASDGLLFTELDRPNGQPCFDTKEFDLVRN 296

Query:   300 MLIAAVEERYRDAAQWRDKLGQLRAKRNLRKFT 332
             M+ A  EERY +AA+WRDKLG+ +AKR LRK+T
Sbjct:   297 MMQAVDEERYDEAAEWRDKLGKFQAKRKLRKYT 329

GO:0003677 "DNA binding" evidence=IEA

GO:0004518 "nuclease activity" evidence=IEA

GO:0006289 "nucleotide-excision repair" evidence=IEA

GO:0009611 "response to wounding" evidence=ISS

TAIR|locus:2156842 AT5G66050 [Arabidopsis thaliana (taxid:3702)]

 Score = 289 (106.8 bits), Expect = 1.8e-25, P = 1.8e-25
 Identities = 74/200 (37%), Positives = 112/200 (56%)

Query:   128 PQG-GHLPDYAPHPAIVLKMEDGTGLLLPIIVRTRDAKR---VAYGGNAQCANCRPTLYQ 183
             P G G L  +   P I LK+      LLP+IV     ++   V   G+ +   C P  +Q
Sbjct:   132 PIGLGFLRQFK-QPTIFLKISCDGDYLLPVIVGDAAVEKLLDVPLQGHTE--EC-PDQFQ 187

Query:   184 VVKEMIEKMGYEVRLVRVTKRVHEAYFAQLYLTKVGNETECVSFDLRPSDAINIAVRCKV 243
              V  +++K+GYEV++V++T R+   Y+A L L K G + E +  D RPSDAIN+A  C+ 
Sbjct:   188 FVSAVVDKLGYEVKMVKLTGRIVNTYYASLCLGKPG-DIEAICIDSRPSDAINVARACQA 246

Query:   244 PIQVNKYLAYSDGMRVIESGKLSTHSPGSDGLLFTELDKPSGQPCLDTKEFNLVRNMLIA 303
             PI VNK +   + +++   G+  +  P  + +L +  D P   P   ++E  LVRNM +A
Sbjct:   247 PIYVNKAIVLEEAIKIGYGGRPQSAKPVFNVILDSAPDGPD--PL--SEELKLVRNMDLA 302

Query:   304 AVEERYRDAAQWRDKLGQLR 323
             + EERY DAA WRD+L  L+
Sbjct:   303 SKEERYIDAAMWRDRLKNLQ 322


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.321   0.136   0.406    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      332       322   0.00085  116 3  11 22  0.37    34
                                                     33  0.45    37


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  3
  No. of states in DFA:  611 (65 KB)
  Total size of DFA:  216 KB (2120 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  23.31u 0.10s 23.41t   Elapsed:  00:00:01
  Total cpu time:  23.31u 0.10s 23.41t   Elapsed:  00:00:01
  Start:  Mon May 20 22:30:18 2013   End:  Mon May 20 22:30:19 2013

GO:0003677 "DNA binding" evidence=IEA

GO:0004518 "nuclease activity" evidence=IEA

GO:0005634 "nucleus" evidence=ISM

GO:0006289 "nucleotide-excision repair" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q9FWS6	BBD1_ARATH	3, ., 1, ., -, ., -	0.7053	0.9668	0.9876	yes	no
Q6YZM6	BBD2_ORYSJ	3, ., 1, ., -, ., -	0.5518	0.9518	0.9723	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: grail3.0003027102 hypothetical protein (326 aa) (Populus trichocarpa)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	332
pfam02577	132	pfam02577, DNase-RNase, Bifunctional nuclease	3e-14
COG1259	151	COG1259, COG1259, Uncharacterized conserved protei	2e-11

>gnl|CDD|217117 pfam02577, DNase-RNase, Bifunctional nuclease

 Score = 68.3 bits (168), Expect = 3e-14
 Identities = 34/113 (30%), Positives = 58/113 (51%), Gaps = 6/113 (5%)

Query: 137 APHPAIVLKMEDGTGLLLPIIVRTRDAKRVAYGGNAQCANCRPTLYQVVKEMIEKMGYEV 196
           +  P ++L+ EDG   +LPI +   +A+ +A          RP  + ++K+++E +G +V
Sbjct: 12  SGAPVVLLRDEDG-ERVLPIWIGPAEAQAIALALEGVEPP-RPLTHDLLKDVLEALGAKV 69

Query: 197 RLVRVTKRVHEAYFAQLYLTKVGNETECVSFDLRPSDAINIAVRCKVPIQVNK 249
             V +       ++A+L L   G E      D RPSDAI +A+R   PI V +
Sbjct: 70  ERVVIDDLKDGTFYARLVLRDGGEEE----IDARPSDAIALALRTGAPIYVTE 118

This family is a bifunctional nuclease, with both DNase and RNase activity. It forms a wedge-shaped dimer, with each monomer being triangular in shape. A large groove at the thick end of the wedge contains a possible active site. Length = 132

>gnl|CDD|224179 COG1259, COG1259, Uncharacterized conserved protein [Function unknown]

 Score = 61.2 bits (149), Expect = 2e-11
 Identities = 34/120 (28%), Positives = 55/120 (45%), Gaps = 12/120 (10%)

Query: 135 DYAPH--PAIVLKMEDGTGLLLPIIVRTRDAKRVAY---GGNAQCANCRPTLYQVVKEMI 189
                  P +VL +E G   +LPI +   +A  +A    G        RP  + ++ E+ 
Sbjct: 13  FVPVSSFPTVVLLLEGGDNRVLPIYIGASEALAIAKALEGVEPP----RPLTHDLLVEIF 68

Query: 190 EKMGYEVRLVRVTKRVHEAYFAQLYLTKVGNETECVSFDLRPSDAINIAVRCKVPIQVNK 249
           E++G  V  V +   +   Y+A L L +   + +    D RPSDAI +A+R   PI V +
Sbjct: 69  EELGARVEKVVIDDLIDNTYYATLILEQDDGKIQ---IDARPSDAIALALRVGAPIYVAE 125

Length = 151

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	332
PF02577	135	DNase-RNase: Bifunctional nuclease; InterPro: IPR0	100.0
COG1259	151	Uncharacterized conserved protein [Function unknow	100.0
PF02151	36	UVR: UvrB/uvrC motif; InterPro: IPR001943 During t	98.2
COG3880	176	Modulator of heat shock repressor CtsR, McsA [Sign	98.14
PRK05298	652	excinuclease ABC subunit B; Provisional	94.51
COG0556	663	UvrB Helicase subunit of the DNA excision repair c	94.26
TIGR00631	655	uvrb excinuclease ABC, B subunit. This family is b	93.56
PRK00558	598	uvrC excinuclease ABC subunit C; Validated	93.07
PRK07883	557	hypothetical protein; Validated	92.8
PRK12306	519	uvrC excinuclease ABC subunit C; Reviewed	91.97
PRK14666	694	uvrC excinuclease ABC subunit C; Provisional	91.57
PRK14668	577	uvrC excinuclease ABC subunit C; Provisional	91.2
TIGR00194	574	uvrC excinuclease ABC, C subunit. This family cons	91.18
PRK14667	567	uvrC excinuclease ABC subunit C; Provisional	91.01
PRK14672	691	uvrC excinuclease ABC subunit C; Provisional	91.0
PRK14670	574	uvrC excinuclease ABC subunit C; Provisional	90.89
PRK14671	621	uvrC excinuclease ABC subunit C; Provisional	90.61
PRK14669	624	uvrC excinuclease ABC subunit C; Provisional	90.58
COG0322	581	UvrC Nuclease subunit of the excinuclease complex	87.63

>PF02577 DNase-RNase: Bifunctional nuclease; InterPro: IPR003729 This entry describes proteins of unknown function

Probab=100.00  E-value=8.7e-35  Score=249.57  Aligned_cols=124  Identities=29%  Similarity=0.450  Sum_probs=103.8

Q ss_pred             ccCCCCCCcEEEEEEcCCCceEEEEEecHHHH-HHHHHcCCCCCCCCCCCHHHHHHHHHHHhCCEEeEEEEEeEECCEEE
Q 020002          132 HLPDYAPHPAIVLKMEDGTGLLLPIIVRTRDA-KRVAYGGNAQCANCRPTLYQVVKEMIEKMGYEVRLVRVTKRVHEAYF  210 (332)
Q Consensus       132 ~Ld~~a~~p~IVL~~edg~~r~LPI~Ig~~EA-aI~~aL~~~~~~~~RPlThDLl~~iLe~lg~~v~~V~I~~~~dGvFy  210 (332)
                      .++...++|++||++++++ +.||||||..|| +|..++.+.+++  ||+|||||.++++++|.++++|+|++++||+||
T Consensus         7 ~~~~~~~~~vvlL~~~~~~-~~lpI~i~~~ea~~i~~~~~~~~~~--RP~thdLl~~~l~~lg~~v~~V~I~~~~dg~f~   83 (135)
T PF02577_consen    7 SVDEPSGQPVVLLREEDGD-RVLPIWIGAFEAQAIALALEGEKPP--RPLTHDLLSDLLEALGAEVERVVIDDLEDGVFY   83 (135)
T ss_dssp             EEETTTTEEEEEEEETTSS-EEEEEE--HHHHHHHHHHHCT---S--S--HHHHHHHHHHHTTEEEEEEEEEEEETTEEE
T ss_pred             EEcCCCCceEEEEEEcCCC-EEEEEEECHHHHHHHHHHHcCCCCC--CCCHHHHHHHHHHHcCCEEEEEEEEEEECCEEE
Confidence            3444567899999999876 899999999999 999999999999  999999999999999999999999999999999


Q ss_pred             EEEEEeecCccceEEEEeCChHHHHHHHHHcCCCEEEehhhHhccCeeeee
Q 020002          211 AQLYLTKVGNETECVSFDLRPSDAINIAVRCKVPIQVNKYLAYSDGMRVIE  261 (332)
Q Consensus       211 A~L~l~~~g~~~e~~~IDaRPSDAIaLAlR~k~PIyV~e~Vl~~agi~i~e  261 (332)
                      |+|++.+++   +++++|+||||||+||+|+++||||+++|++++|+++..
T Consensus        84 A~L~l~~~~---~~~~id~RpSDAiaLAl~~~~PI~v~~~vl~~~~~~~~~  131 (135)
T PF02577_consen   84 ARLVLRQGG---EEIEIDARPSDAIALALRFGAPIYVSEEVLDEAGVPVEE  131 (135)
T ss_dssp             EEEEEEETT---TEEEEEE-HHHHHHHHHHHT--EEEEHHHHHHH-EE--H
T ss_pred             EEEEEecCC---EEEEEECcHhHHHHHHHHhCCCEEEeHHHHhhcCCCCch
Confidence            999998776   789999999999999999999999999999999999874

The structure has been determined for one member of this group, the hypothetical protein TM0160 from Thermotoga maritima, which was found to consist of a duplication of two beta(3)-alpha(2) structural repeats, forming a single barrel-like beta-sheet [].; PDB: 1SJ5_A 1VJL_A.

>COG1259 Uncharacterized conserved protein [Function unknown]

Probab=100.00  E-value=1.6e-32  Score=240.41  Aligned_cols=125  Identities=26%  Similarity=0.417  Sum_probs=113.4

Q ss_pred             ccCCCCCCcEEEEEEcCCCceEEEEEecHHHH-HHHHHcCCCCCCCCCCCHHHHHHHHHHHhCCEEeEEEEEeEECCEEE
Q 020002          132 HLPDYAPHPAIVLKMEDGTGLLLPIIVRTRDA-KRVAYGGNAQCANCRPTLYQVVKEMIEKMGYEVRLVRVTKRVHEAYF  210 (332)
Q Consensus       132 ~Ld~~a~~p~IVL~~edg~~r~LPI~Ig~~EA-aI~~aL~~~~~~~~RPlThDLl~~iLe~lg~~v~~V~I~~~~dGvFy  210 (332)
                      ++.+-...|++++...+++++.||||||..|| +|+.++++..+|  ||+||||+.++++.++.++++|+|++++|||||
T Consensus        12 ~~~~~~~~~~~v~~~~~~~~~~lPI~Ig~~ea~si~~~l~~~~p~--RP~tHdll~~i~~~l~~~v~kVvI~d~~d~tyy   89 (151)
T COG1259          12 FFVPVSSFPTVVLLLEGGDNRVLPIYIGASEALAIAKALEGVEPP--RPLTHDLLVEIFEELGARVEKVVIDDLIDNTYY   89 (151)
T ss_pred             EEecccCCceEEEEEEcCCCeEEEEEEeHHHHHHHHHhhccCCCC--CCcHHHHHHHHHHHhCCcEEEEEEEEeccCeEE
Confidence            34445667766666667777899999999999 999999999999  999999999999999999999999999999999


Q ss_pred             EEEEEeecCccceEEEEeCChHHHHHHHHHcCCCEEEehhhHhccCeeeee
Q 020002          211 AQLYLTKVGNETECVSFDLRPSDAINIAVRCKVPIQVNKYLAYSDGMRVIE  261 (332)
Q Consensus       211 A~L~l~~~g~~~e~~~IDaRPSDAIaLAlR~k~PIyV~e~Vl~~agi~i~e  261 (332)
                      |+|++++++   ....+||||||||+||+|.++||||.|+|+++++++..+
T Consensus        90 A~L~~~~~~---~~~~iDaRPSDaI~LAlr~~~PI~V~e~v~~~a~~~~~~  137 (151)
T COG1259          90 ATLILEQDD---GKIQIDARPSDAIALALRVGAPIYVAEEVLDEAEIEIED  137 (151)
T ss_pred             EEEEEEcCC---ceEEEecccchHHHHHHHhCCCEEEehhhhhhhcCcCcc
Confidence            999999887   569999999999999999999999999999999888654

>PF02151 UVR: UvrB/uvrC motif; InterPro: IPR001943 During the process of Escherichia coli nucleotide excision repair, DNA damage recognition and processing are achieved by the action of the uvrA, uvrB, and uvrC gene products []

Probab=98.20  E-value=2.8e-06  Score=58.09  Aligned_cols=34  Identities=29%  Similarity=0.449  Sum_probs=29.6

Q ss_pred             hhHHHHHHHHHHHHH-hhhHHHHHHHHHHHhHHhh
Q 020002          292 KEFNLVRNMLIAAVE-ERYRDAAQWRDKLGQLRAK  325 (332)
Q Consensus       292 ~e~~~L~~~L~~aie-E~YE~AA~lRDeI~~l~~~  325 (332)
                      ..+..|+..|..|++ ++||+||.|||+|..|+++
T Consensus         2 ~~i~~l~~~m~~a~~~~dfE~Aa~~Rd~i~~l~~q   36 (36)
T PF02151_consen    2 KLIKELEEKMEEAVENEDFEKAARLRDQIKALKKQ   36 (36)
T ss_dssp             HHHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHcC
Confidence            457889999999998 9999999999999999864

UvrB and UvrC share a common domain of around 35 amino acids, the so called UVR domain. This domain in UvrB can interact with the homologous domain in UvrC throughout a putative coiled coil structure. This interaction is important for the incision of the damaged strand [].; GO: 0003677 DNA binding, 0004518 nuclease activity, 0006289 nucleotide-excision repair; PDB: 3PXG_D 3PXI_C 1E52_B 1QOJ_B 2D7D_B 2NMV_B.

>COG3880 Modulator of heat shock repressor CtsR, McsA [Signal transduction mechanisms]

Probab=98.14  E-value=2.9e-06  Score=76.43  Aligned_cols=39  Identities=26%  Similarity=0.416  Sum_probs=35.1

Q ss_pred             cchhhHHHHHHHHHHHHH-hhhHHHHHHHHHHHhHHhhhc
Q 020002          289 LDTKEFNLVRNMLIAAVE-ERYRDAAQWRDKLGQLRAKRN  327 (332)
Q Consensus       289 ~~~~e~~~L~~~L~~aie-E~YE~AA~lRDeI~~l~~~~~  327 (332)
                      ..+.++.+|++.|+++|+ |+||+||.+||||+.|+.+..
T Consensus       133 ~~~~~I~~L~e~Lq~~i~~EefEeAA~iRDqIr~Lk~k~~  172 (176)
T COG3880         133 NPKRKIIALKEALQDLIEREEFEEAAVIRDQIRALKAKNG  172 (176)
T ss_pred             cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC
Confidence            346889999999999999 999999999999999997643

>PRK05298 excinuclease ABC subunit B; Provisional

Probab=94.51  E-value=0.052  Score=57.96  Aligned_cols=37  Identities=19%  Similarity=0.267  Sum_probs=31.4

Q ss_pred             hhHHHHHHHHHHHHH-hhhHHHHHHHHHHHhHHhhhcc
Q 020002          292 KEFNLVRNMLIAAVE-ERYRDAAQWRDKLGQLRAKRNL  328 (332)
Q Consensus       292 ~e~~~L~~~L~~aie-E~YE~AA~lRDeI~~l~~~~~~  328 (332)
                      ..++.|+++|++|.+ ++||+||++||+|+.|++....
T Consensus       613 ~~~~~l~~~M~~aa~~l~fE~Aa~~Rd~i~~l~~~~~~  650 (652)
T PRK05298        613 KLIKELEKQMKEAAKNLEFEEAARLRDEIKELKEELLG  650 (652)
T ss_pred             HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhcc
Confidence            456778888888887 9999999999999999876543

>COG0556 UvrB Helicase subunit of the DNA excision repair complex [DNA replication, recombination, and repair]

Probab=94.26  E-value=0.062  Score=56.76  Aligned_cols=36  Identities=19%  Similarity=0.313  Sum_probs=29.5

Q ss_pred             hhHHHHHHHHHHHHH-hhhHHHHHHHHHHHhHHhhhc
Q 020002          292 KEFNLVRNMLIAAVE-ERYRDAAQWRDKLGQLRAKRN  327 (332)
Q Consensus       292 ~e~~~L~~~L~~aie-E~YE~AA~lRDeI~~l~~~~~  327 (332)
                      +.++.|+..|.+|.+ -+||+||++||+|++|++...
T Consensus       624 ~~I~~Le~~M~~aA~~l~FE~Aa~lRD~i~~L~~~~~  660 (663)
T COG0556         624 KLIKKLEKEMKEAAKNLEFEEAARLRDEIKELKEELL  660 (663)
T ss_pred             HHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhc
Confidence            456778877777766 999999999999999997653

>TIGR00631 uvrb excinuclease ABC, B subunit

Probab=93.56  E-value=0.069  Score=57.28  Aligned_cols=31  Identities=19%  Similarity=0.331  Sum_probs=26.4

Q ss_pred             hHHHHHHHHHHHHH-hhhHHHHHHHHHHHhHH
Q 020002          293 EFNLVRNMLIAAVE-ERYRDAAQWRDKLGQLR  323 (332)
Q Consensus       293 e~~~L~~~L~~aie-E~YE~AA~lRDeI~~l~  323 (332)
                      .++.|+++|++|.+ ++||+||++||+|+.|+
T Consensus       624 ~i~~l~~~M~~aa~~l~FE~Aa~~RD~i~~L~  655 (655)
T TIGR00631       624 LIKQLEKEMKQAARNLEFEEAARLRDEILELK  655 (655)
T ss_pred             HHHHHHHHHHHHHHccCHHHHHHHHHHHHhcC
Confidence            35678888888887 99999999999999874

This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University)

>PRK00558 uvrC excinuclease ABC subunit C; Validated

Probab=93.07  E-value=0.11  Score=55.14  Aligned_cols=34  Identities=24%  Similarity=0.379  Sum_probs=29.2

Q ss_pred             hHHHHHHHHHHHHH-hhhHHHHHHHHHHHhHHhhh
Q 020002          293 EFNLVRNMLIAAVE-ERYRDAAQWRDKLGQLRAKR  326 (332)
Q Consensus       293 e~~~L~~~L~~aie-E~YE~AA~lRDeI~~l~~~~  326 (332)
                      -++.|++.|++|.+ ++||+||.+||+|..|++-.
T Consensus       203 ~i~~L~~~M~~aa~~l~FE~Aa~~RD~i~aL~~~~  237 (598)
T PRK00558        203 VLKELEEKMEEASENLEFERAARYRDQIQALRRVQ  237 (598)
T ss_pred             HHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHH
Confidence            45778888888887 99999999999999998644

>PRK07883 hypothetical protein; Validated

Probab=92.80  E-value=0.13  Score=54.20  Aligned_cols=31  Identities=29%  Similarity=0.453  Sum_probs=27.4

Q ss_pred             HHHHHHHHHHHHH-hhhHHHHHHHHHHHhHHh
Q 020002          294 FNLVRNMLIAAVE-ERYRDAAQWRDKLGQLRA  324 (332)
Q Consensus       294 ~~~L~~~L~~aie-E~YE~AA~lRDeI~~l~~  324 (332)
                      ++.|++.|++|.+ .+||+||++||+|..++.
T Consensus       408 ~~~l~~~M~~aa~~l~FE~Aa~~Rd~i~~l~~  439 (557)
T PRK07883        408 LAALRARIDRLAAAERFEEAARLRDRLAALLR  439 (557)
T ss_pred             HHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHH
Confidence            4678888888887 999999999999999985

>PRK12306 uvrC excinuclease ABC subunit C; Reviewed

Probab=91.97  E-value=0.2  Score=52.60  Aligned_cols=31  Identities=10%  Similarity=0.288  Sum_probs=27.2

Q ss_pred             HHHHHHHHHHHHH-hhhHHHHHHHHHHHhHHh
Q 020002          294 FNLVRNMLIAAVE-ERYRDAAQWRDKLGQLRA  324 (332)
Q Consensus       294 ~~~L~~~L~~aie-E~YE~AA~lRDeI~~l~~  324 (332)
                      ++.|++.|++|-+ .+||+||++||.|..++.
T Consensus       194 ~~~L~~~M~~aa~~l~FE~Aa~~RD~l~~l~~  225 (519)
T PRK12306        194 IEKLEEEMAEKAKNQQFERALVIRDEINAIEN  225 (519)
T ss_pred             HHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHH
Confidence            4678888888887 999999999999999985

>PRK14666 uvrC excinuclease ABC subunit C; Provisional

Probab=91.57  E-value=0.22  Score=53.97  Aligned_cols=33  Identities=24%  Similarity=0.309  Sum_probs=28.3

Q ss_pred             hHHHHHHHHHHHHH-hhhHHHHHHHHHHHhHHhh
Q 020002          293 EFNLVRNMLIAAVE-ERYRDAAQWRDKLGQLRAK  325 (332)
Q Consensus       293 e~~~L~~~L~~aie-E~YE~AA~lRDeI~~l~~~  325 (332)
                      -++.|++.|++|.+ .+||+||++||+|+.++.-
T Consensus       202 l~~~L~~~M~~AAe~l~FE~AA~lRD~i~aL~~~  235 (694)
T PRK14666        202 LVDALRTEMEAASEALEFERAAVLRDQIRAVERT  235 (694)
T ss_pred             HHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHH
Confidence            35778888888887 9999999999999999753

>PRK14668 uvrC excinuclease ABC subunit C; Provisional

Probab=91.20  E-value=0.27  Score=52.23  Aligned_cols=31  Identities=29%  Similarity=0.441  Sum_probs=27.3

Q ss_pred             HHHHHHHHHHHHH-hhhHHHHHHHHHHHhHHh
Q 020002          294 FNLVRNMLIAAVE-ERYRDAAQWRDKLGQLRA  324 (332)
Q Consensus       294 ~~~L~~~L~~aie-E~YE~AA~lRDeI~~l~~  324 (332)
                      ++.|++.|++|-+ .+||+||++||+|+.++.
T Consensus       201 ~~~l~~~m~~aa~~l~FE~Aa~~Rd~i~~l~~  232 (577)
T PRK14668        201 ADPLRREMEAAAQAQEFERAANLRDRLEAVEA  232 (577)
T ss_pred             HHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHH
Confidence            4678888888887 999999999999999985

>TIGR00194 uvrC excinuclease ABC, C subunit

Probab=91.18  E-value=0.27  Score=52.19  Aligned_cols=31  Identities=23%  Similarity=0.388  Sum_probs=26.9

Q ss_pred             HHHHHHHHHHHHH-hhhHHHHHHHHHHHhHHh
Q 020002          294 FNLVRNMLIAAVE-ERYRDAAQWRDKLGQLRA  324 (332)
Q Consensus       294 ~~~L~~~L~~aie-E~YE~AA~lRDeI~~l~~  324 (332)
                      ++.|++.|++|-+ .+||+||++||+|+.++.
T Consensus       196 ~~~L~~~M~~aa~~l~FE~Aa~~Rd~i~~l~~  227 (574)
T TIGR00194       196 IKELEQKMEKASENLEFEEAARIRDQIAAVRE  227 (574)
T ss_pred             HHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHH
Confidence            4668888888877 999999999999999985

This family consists of the DNA repair enzyme UvrC, an ABC excinuclease subunit which interacts with the UvrA/UvrB complex to excise UV-damaged nucleotide segments.

>PRK14667 uvrC excinuclease ABC subunit C; Provisional

Probab=91.01  E-value=0.27  Score=52.14  Aligned_cols=32  Identities=16%  Similarity=0.127  Sum_probs=27.4

Q ss_pred             hHHHHHHHHHHHHH-hhhHHHHHHHHHHHhHHh
Q 020002          293 EFNLVRNMLIAAVE-ERYRDAAQWRDKLGQLRA  324 (332)
Q Consensus       293 e~~~L~~~L~~aie-E~YE~AA~lRDeI~~l~~  324 (332)
                      -++.|++.|++|-+ .+||+||++||+|..++.
T Consensus       200 l~~~L~~~M~~aa~~l~FE~Aa~~RD~i~~l~~  232 (567)
T PRK14667        200 VLPELYDKIEEYSQKLMFEKAAVIRDQILALEN  232 (567)
T ss_pred             HHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHH
Confidence            34678888888877 999999999999999875

>PRK14672 uvrC excinuclease ABC subunit C; Provisional

Probab=91.00  E-value=0.27  Score=53.25  Aligned_cols=31  Identities=26%  Similarity=0.403  Sum_probs=27.1

Q ss_pred             HHHHHHHHHHHHH-hhhHHHHHHHHHHHhHHh
Q 020002          294 FNLVRNMLIAAVE-ERYRDAAQWRDKLGQLRA  324 (332)
Q Consensus       294 ~~~L~~~L~~aie-E~YE~AA~lRDeI~~l~~  324 (332)
                      ++.|++.|++|-+ .+||+||++||+|..++.
T Consensus       207 l~~L~~~M~~AA~~l~FE~AA~lRD~i~aL~~  238 (691)
T PRK14672        207 VARLEKRMKRAVRQEAFEAAARIRDDIQAIRC  238 (691)
T ss_pred             HHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHH
Confidence            4678888888887 999999999999999984

>PRK14670 uvrC excinuclease ABC subunit C; Provisional

Probab=90.89  E-value=0.28  Score=52.10  Aligned_cols=31  Identities=13%  Similarity=0.255  Sum_probs=27.1

Q ss_pred             HHHHHHHHHHHHH-hhhHHHHHHHHHHHhHHh
Q 020002          294 FNLVRNMLIAAVE-ERYRDAAQWRDKLGQLRA  324 (332)
Q Consensus       294 ~~~L~~~L~~aie-E~YE~AA~lRDeI~~l~~  324 (332)
                      ++.|++.|++|-+ .+||+||++||+|..++.
T Consensus       179 ~~~L~~~M~~aa~~l~FE~Aa~~RD~i~al~~  210 (574)
T PRK14670        179 LSQIEIKMKEAIQKEDFEAAIKLKETKRSLIE  210 (574)
T ss_pred             HHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHH
Confidence            4668888888887 999999999999999975

>PRK14671 uvrC excinuclease ABC subunit C; Provisional

Probab=90.61  E-value=0.31  Score=52.21  Aligned_cols=31  Identities=16%  Similarity=0.363  Sum_probs=27.0

Q ss_pred             HHHHHHHHHHHHH-hhhHHHHHHHHHHHhHHh
Q 020002          294 FNLVRNMLIAAVE-ERYRDAAQWRDKLGQLRA  324 (332)
Q Consensus       294 ~~~L~~~L~~aie-E~YE~AA~lRDeI~~l~~  324 (332)
                      ++.|++.|++|-+ .+||+||++||+|..++.
T Consensus       217 ~~~L~~~M~~as~~l~FE~Aa~~RD~i~~l~~  248 (621)
T PRK14671        217 IRSLTEEMQRAAAELKFEEAAELKDQIESLKR  248 (621)
T ss_pred             HHHHHHHHHHHHHhccHHHHHHHHHHHHHHHH
Confidence            4678888888877 999999999999999974

>PRK14669 uvrC excinuclease ABC subunit C; Provisional

Probab=90.58  E-value=0.31  Score=52.27  Aligned_cols=31  Identities=23%  Similarity=0.273  Sum_probs=26.8

Q ss_pred             HHHHHHHHHHHHH-hhhHHHHHHHHHHHhHHh
Q 020002          294 FNLVRNMLIAAVE-ERYRDAAQWRDKLGQLRA  324 (332)
Q Consensus       294 ~~~L~~~L~~aie-E~YE~AA~lRDeI~~l~~  324 (332)
                      ++.|++.|++|.+ .+||+||++||+|+.++.
T Consensus       205 ~~~L~~~M~~aa~~l~FE~Aa~~RD~i~~l~~  236 (624)
T PRK14669        205 ARSLRARMEAAALEMQFELAAKYRDLITTVEE  236 (624)
T ss_pred             HHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHH
Confidence            4678888888877 999999999999999875

>COG0322 UvrC Nuclease subunit of the excinuclease complex [DNA replication, recombination, and repair]

Probab=87.63  E-value=0.69  Score=49.33  Aligned_cols=33  Identities=21%  Similarity=0.272  Sum_probs=27.8

Q ss_pred             hHHHHHHHHHHHHH-hhhHHHHHHHHHHHhHHhh
Q 020002          293 EFNLVRNMLIAAVE-ERYRDAAQWRDKLGQLRAK  325 (332)
Q Consensus       293 e~~~L~~~L~~aie-E~YE~AA~lRDeI~~l~~~  325 (332)
                      -+..|++.|++|-+ .+||.||++||.|..++.-
T Consensus       203 v~~~L~~~M~~As~~l~FE~Aa~~RD~i~al~~l  236 (581)
T COG0322         203 VLQELEEKMEEASENLDFERAARLRDQIKALEKL  236 (581)
T ss_pred             HHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHH
Confidence            35678888888877 9999999999999999753

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	332
1vjl_A	164	Hypothetical protein TM0160; structural genomics,	2e-21

>1vjl_A Hypothetical protein TM0160; structural genomics, joint center for structural genomics, J protein structure initiative, PSI; 1.90A {Thermotoga maritima} SCOP: d.257.1.1 PDB: 1sj5_A Length = 164

 Score = 88.6 bits (219), Expect = 2e-21
 Identities = 31/156 (19%), Positives = 59/156 (37%), Gaps = 19/156 (12%)

Query: 112 MIKMRDGRHLRCVHNNPQGGHLPDYAPHPAIVLKMEDGTGLLLPIIVRTRDAKRVAYGGN 171
           M K      ++ +  +            P ++L   +GT  +LPI +   +   +A    
Sbjct: 13  MRKAW----VKTLALDRVSNT-------PVVILG-IEGTNRVLPIWIGACEGHALALAME 60

Query: 172 AQCANCRPTLYQVVKEMIEKMGYEVRLVRVTKRVHEAYFAQLYL------TKVGNETECV 225
                 RP  + ++  ++E +   V  V +       ++A L +       +   E   +
Sbjct: 61  KM-EFPRPLTHDLLLSVLESLEARVDKVIIHSLKDNTFYATLVIRDLTYTDEEDEEAALI 119

Query: 226 SFDLRPSDAINIAVRCKVPIQVNKYLAYSDGMRVIE 261
             D RPSDAI +AV+   PI V+  L     + +  
Sbjct: 120 DIDSRPSDAIILAVKTGAPIFVSDNLVEKHSIELEV 155

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	332
1vjl_A	164	Hypothetical protein TM0160; structural genomics,	100.0
1e52_A	63	Excinuclease ABC subunit; DNA excision repair, UVR	97.72
2d7d_A	661	Uvrabc system protein B; helicase, protein-DNA-ADP	95.62
1c4o_A	664	DNA nucleotide excision repair enzyme UVRB; uvrabc	94.79

>1vjl_A Hypothetical protein TM0160; structural genomics, joint center for structural genomics, J protein structure initiative, PSI; 1.90A {Thermotoga maritima} SCOP: d.257.1.1 PDB: 1sj5_A

Probab=100.00  E-value=1.3e-38  Score=281.56  Aligned_cols=131  Identities=21%  Similarity=0.314  Sum_probs=120.3

Q ss_pred             CCCcccCCCCCCcEEEEEEcCCCceEEEEEecHHHH-HHHHHcCCCCCCCCCCCHHHHHHHHHHHhCCEEeEEEEEeEEC
Q 020002          128 PQGGHLPDYAPHPAIVLKMEDGTGLLLPIIVRTRDA-KRVAYGGNAQCANCRPTLYQVVKEMIEKMGYEVRLVRVTKRVH  206 (332)
Q Consensus       128 ~q~G~Ld~~a~~p~IVL~~edg~~r~LPI~Ig~~EA-aI~~aL~~~~~~~~RPlThDLl~~iLe~lg~~v~~V~I~~~~d  206 (332)
                      ..++++|+++++|+|||++++++ +.||||||.+|| +|+.++++.+++  ||+|||||.++++++|+++.+|+|++++|
T Consensus        18 v~gi~ld~~~~~pvvvL~~~~g~-r~LPI~Ig~~EA~aI~~~l~~~~~~--RPlThDLl~~il~~lg~~v~~V~I~~l~d   94 (164)
T 1vjl_A           18 VKTLALDRVSNTPVVILGIEGTN-RVLPIWIGACEGHALALAMEKMEFP--RPLTHDLLLSVLESLEARVDKVIIHSLKD   94 (164)
T ss_dssp             EEEEEECTTTCCEEEEEEETTSS-EEEEEECCHHHHHHHHHHHHTCCCS--SCCHHHHHHHHHHHTTEEEEEEEEEEEET
T ss_pred             EEEEEEcCCCCceEEEEEecCCC-EEEEEEECHHHHHHHHHHhcCCCCC--CCCHHHHHHHHHHHcCCEEEEEEEEEeEC
Confidence            34899999999999999998886 899999999999 999999999999  99999999999999999999999999999


Q ss_pred             CEEEEEEEEe------ecCccceEEEEeCChHHHHHHHHHcCCCEEEehhhHhccCeeeee
Q 020002          207 EAYFAQLYLT------KVGNETECVSFDLRPSDAINIAVRCKVPIQVNKYLAYSDGMRVIE  261 (332)
Q Consensus       207 GvFyA~L~l~------~~g~~~e~~~IDaRPSDAIaLAlR~k~PIyV~e~Vl~~agi~i~e  261 (332)
                      |+|||+|+++      +++++.+.+++|+|||||||||+|+++||||+++|++++|+++..
T Consensus        95 gtfyA~L~l~~~~~~~~~~~~~~~~~iDaRPSDAIaLAlR~~~PI~V~e~Vl~~a~i~~~~  155 (164)
T 1vjl_A           95 NTFYATLVIRDLTYTDEEDEEAALIDIDSRPSDAIILAVKTGAPIFVSDNLVEKHSIELEV  155 (164)
T ss_dssp             TEEEEEEEEEECC--------CCEEEEEECHHHHHHHHHHHTCCEEEEHHHHHHHCEECCH
T ss_pred             CEEEEEEEEeccccccCCCCcceEEEEECcHHHHHHHHHHHCCCEEEcHHHHhhcCCCCcc
Confidence            9999999999      655333678999999999999999999999999999999998764

>2d7d_A Uvrabc system protein B; helicase, protein-DNA-ADP ternary complex, hydrolase/DNA complex; HET: ADP; 2.10A {Bacillus subtilis} PDB: 2nmv_A* 2fdc_A* 1t5l_A 3uwx_B 1d9z_A* 1d9x_A 2d7d_B* 2nmv_B*

Probab=95.62  E-value=0.0057  Score=63.25  Aligned_cols=34  Identities=26%  Similarity=0.326  Sum_probs=24.5

Q ss_pred             hhHHHHHHHHHHHHH-hhhHHHHHHHHHHHhHHhh
Q 020002          292 KEFNLVRNMLIAAVE-ERYRDAAQWRDKLGQLRAK  325 (332)
Q Consensus       292 ~e~~~L~~~L~~aie-E~YE~AA~lRDeI~~l~~~  325 (332)
                      +.++.|+++|++|.+ ++||+||+|||+|+.|+++
T Consensus       626 ~~i~~l~~~m~~aa~~~~fe~Aa~~Rd~i~~l~~~  660 (661)
T 2d7d_A          626 KVVEQMEHEMKEAAKALDFERAAELRDLLLELKAE  660 (661)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHC------
T ss_pred             HHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHhc
Confidence            446778888888887 9999999999999999754

>1c4o_A DNA nucleotide excision repair enzyme UVRB; uvrabc, helicase, hypertherm protein, replication; HET: DNA BOG; 1.50A {Thermus thermophilus} SCOP: c.37.1.19 c.37.1.19 PDB: 1d2m_A*

Probab=94.79  E-value=0.0051  Score=63.69  Aligned_cols=36  Identities=22%  Similarity=0.297  Sum_probs=0.0

Q ss_pred             hhhHHHHHHHHHHHHH-hhhHHHHHHHHHHHhHHhhh
Q 020002          291 TKEFNLVRNMLIAAVE-ERYRDAAQWRDKLGQLRAKR  326 (332)
Q Consensus       291 ~~e~~~L~~~L~~aie-E~YE~AA~lRDeI~~l~~~~  326 (332)
                      .+.++.|++.|++|.+ ++||+||+|||+|+.|+++.
T Consensus       610 ~~~i~~l~~~m~~aa~~l~fe~Aa~lRd~i~~l~~~~  646 (664)
T 1c4o_A          610 RERIAELELAMWQAAEALDFERAARLRDEIRALEARL  646 (664)
T ss_dssp             -------------------------------------
T ss_pred             HHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHH
Confidence            4567888888888887 99999999999999998764

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	332
d1vjla_	151	d.257.1.1 (A:) Hypothetical protein TM0160 {Thermo	9e-23

>d1vjla_ d.257.1.1 (A:) Hypothetical protein TM0160 {Thermotoga maritima [TaxId: 2336]} Length = 151

class: Alpha and beta proteins (a+b)
fold: Hypothetical protein TM0160
superfamily: Hypothetical protein TM0160
family: Hypothetical protein TM0160
domain: Hypothetical protein TM0160
species: Thermotoga maritima [TaxId: 2336]

 Score = 90.4 bits (224), Expect = 9e-23
 Identities = 29/130 (22%), Positives = 54/130 (41%), Gaps = 8/130 (6%)

Query: 139 HPAIVLKMEDGTGLLLPIIVRTRDAKRVAYGGNAQCANCRPTLYQVVKEMIEKMGYEVRL 198
            P ++L   +GT  +LPI +   +   +A          RP  + ++  ++E +   V  
Sbjct: 18  TPVVILG-IEGTNRVLPIWIGACEGHALALAMEKM-EFPRPLTHDLLLSVLESLEARVDK 75

Query: 199 VRVTKRVHEAYFAQLYL------TKVGNETECVSFDLRPSDAINIAVRCKVPIQVNKYLA 252
           V +       ++A L +       +   E   +  D RPSDAI +AV+   PI V+  L 
Sbjct: 76  VIIHSLKDNTFYATLVIRDLTYTDEEDEEAALIDIDSRPSDAIILAVKTGAPIFVSDNLV 135

Query: 253 YSDGMRVIES 262
               + +  +
Sbjct: 136 EKHSIELEVN 145

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	332
d1vjla_	151	Hypothetical protein TM0160 {Thermotoga maritima [	100.0
d1e52a_	56	C-terminal UvrC-binding domain of UvrB {Escherichi	97.72

>d1vjla_ d.257.1.1 (A:) Hypothetical protein TM0160 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a+b)
fold: Hypothetical protein TM0160
superfamily: Hypothetical protein TM0160
family: Hypothetical protein TM0160
domain: Hypothetical protein TM0160
species: Thermotoga maritima [TaxId: 2336]

Probab=100.00  E-value=4.5e-37  Score=266.20  Aligned_cols=129  Identities=22%  Similarity=0.324  Sum_probs=116.8

Q ss_pred             CcccCCCCCCcEEEEEEcCCCceEEEEEecHHHH-HHHHHcCCCCCCCCCCCHHHHHHHHHHHhCCEEeEEEEEeEECCE
Q 020002          130 GGHLPDYAPHPAIVLKMEDGTGLLLPIIVRTRDA-KRVAYGGNAQCANCRPTLYQVVKEMIEKMGYEVRLVRVTKRVHEA  208 (332)
Q Consensus       130 ~G~Ld~~a~~p~IVL~~edg~~r~LPI~Ig~~EA-aI~~aL~~~~~~~~RPlThDLl~~iLe~lg~~v~~V~I~~~~dGv  208 (332)
                      +-.+++.+++|+|||++++++ +.||||||..|| +|+.++++.+++  ||+|||||.++++++|+++.+|+|+++++|+
T Consensus         9 ~i~~~~~~~~pvvlL~~~~~~-~~LPI~Ig~~EA~~I~~~l~~~~~~--RP~thDLl~~~l~~lg~~v~~V~I~~~~dg~   85 (151)
T d1vjla_           9 TLALDRVSNTPVVILGIEGTN-RVLPIWIGACEGHALALAMEKMEFP--RPLTHDLLLSVLESLEARVDKVIIHSLKDNT   85 (151)
T ss_dssp             EEEECTTTCCEEEEEEETTSS-EEEEEECCHHHHHHHHHHHHTCCCS--SCCHHHHHHHHHHHTTEEEEEEEEEEEETTE
T ss_pred             EEEEecCCCCcEEEEEECCCC-eEEEEEEChHHHHHHHHHHcCCCCC--CCCHHHHHHHHHHHhCCEEEEEEEEEEecCC
Confidence            345666788899999998776 899999999999 999999999999  9999999999999999999999999999999


Q ss_pred             EEEEEEEeecC------ccceEEEEeCChHHHHHHHHHcCCCEEEehhhHhccCeeeee
Q 020002          209 YFAQLYLTKVG------NETECVSFDLRPSDAINIAVRCKVPIQVNKYLAYSDGMRVIE  261 (332)
Q Consensus       209 FyA~L~l~~~g------~~~e~~~IDaRPSDAIaLAlR~k~PIyV~e~Vl~~agi~i~e  261 (332)
                      |||+|+++++.      ++.+.++|||||||||+||+|+++||||+++|++++|+.+..
T Consensus        86 fyA~L~l~~~~~~~~~~~~~~~~~iDaRPSDAIaLAlr~~~PI~v~~~Vl~~a~i~~~~  144 (151)
T d1vjla_          86 FYATLVIRDLTYTDEEDEEAALIDIDSRPSDAIILAVKTGAPIFVSDNLVEKHSIELEV  144 (151)
T ss_dssp             EEEEEEEEECC--------CCEEEEEECHHHHHHHHHHHTCCEEEEHHHHHHHCEECCH
T ss_pred             eEEEEEEecCcccccccccCceeEeccChhHHHHHHHhhCCCEEEcHHHHHhcCCCCCc
Confidence            99999997642      123678999999999999999999999999999999997653

>d1e52a_ a.2.9.1 (A:) C-terminal UvrC-binding domain of UvrB {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: Long alpha-hairpin
superfamily: C-terminal UvrC-binding domain of UvrB
family: C-terminal UvrC-binding domain of UvrB
domain: C-terminal UvrC-binding domain of UvrB
species: Escherichia coli [TaxId: 562]

Probab=97.72  E-value=1.1e-05  Score=57.80  Aligned_cols=36  Identities=25%  Similarity=0.415  Sum_probs=31.8

Q ss_pred             hhhHHHHHHHHHHHHH-hhhHHHHHHHHHHHhHHhhh
Q 020002          291 TKEFNLVRNMLIAAVE-ERYRDAAQWRDKLGQLRAKR  326 (332)
Q Consensus       291 ~~e~~~L~~~L~~aie-E~YE~AA~lRDeI~~l~~~~  326 (332)
                      .+.++.|++.|.+|.+ .+||+||++||+|+.|++..
T Consensus        16 ~k~i~~Le~~M~~aa~~l~FE~AA~~RD~I~~l~~~l   52 (56)
T d1e52a_          16 QQKIHELEGLMMQHAQNLEFEEAAQIRDQLHQLRELF   52 (56)
T ss_dssp             HHHHHHHHHHHHHHHHTTCHHHHTTHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHH
Confidence            4668889998888888 99999999999999998753