Citrus Sinensis ID: 020012

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330--
MMYSLRRVMAQIGRSQTTVKRIILYSPAHFTRPFSSRAHQFTKATTKTTTSKDVVWPKPSEIPFQVKVANSVNLIGHVDAPVQFQTSSDGKHWAGTVIVQHAASHSLWIPILFEGDLAHIASSHLKKDDHVHIAGQLTADPPAIEGQANVQVMVHSLNLIEPTSQKRMFFVSKKQEAATVDHSVKISSSKKDGDSALSSWRDLLDNPEQWRDYRSDKLKGLVKPRYPDFKRKDGTLPLWLNSAPDWVLSELEGVVFDKSKPVLDDQTRKSNYVKKSKGVVFDKSKPVLDDQTQKSNYVKKSKVDDLWKDLVENPDKWWDNRLDKVILYNLCF
ccHHHHHHHHHHcccHHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccEEEEEEEEcccccEEEEcccccEEEEEEEEEcccccccEEEEEEEcHHHHHHHHHcccccEEEEEEEEEEccccccccEEEEEEEEEEcccccccccccccccccccccccccccccccccccccccccHHHHHHccccccccccccccccccccccccccccccccccccccccHHHHHHHccccccccccccccccccccccccccccccccccccccHHHHHHHHHccccHHHHHHHHHHccccHHcccccccccccccc
ccHHHHHHHHHHHccccccccHEEcccccccccccccHHHcccccccccccccccccccccccccHHHHcEEEEEEEccccEEEEEcccccEEEEEEEEEEccccccEEEEEEcHHHHHHHHHHHccccEEEEEEEEEEcccccccccEEEEEEEEEEEEccccccccccccccccccccccccccccccccccHHHHHHHHHHHccHHHHHccccccccccccccccccccccccEEEEccccHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccHHHHcccHHHHHHHHHHcHHHHHHcccccEEEEEEcc
MMYSLRRVMAQIGRSQTTVKRIIlyspahftrpfssrahqftkattktttskdvvwpkpseipfqvkVANSVnlighvdapvqfqtssdgkhwAGTVIVQHAashslwipilfegdLAHIAsshlkkddhvhiagqltadppaiegqaNVQVMVHSLnlieptsqkRMFFVSKkqeaatvdhsvkissskkdgdsaLSSWRDlldnpeqwrDYRSDKlkglvkprypdfkrkdgtlplwlnsapdwvlselegvvfdkskpvlddqtrksnyvkkskgvvfdkskpvlddqtqksnyvkkskVDDLWKDLVenpdkwwdnrldKVILYNLCF
MMYSLRrvmaqigrsqttvKRIILYSPAhftrpfssrahqftkattktttskdvvwpkpsEIPFQVKVANSVNLIGHVDAPVQFQTSSDGKHWAGTVIVQHAASHSLWIPILFEGDLAHIASSHLKKDDHVHIAGQLTADPPAIEGQANVQVMVHSLNLIEPTSQKRMFFVSKKqeaatvdhsvkissskkdgdsalsswrdlldnpeqwrdyrsdklkglvkprypdfkrkdgtlpLWLNSAPDWVLSELEgvvfdkskpvlddqtrksnyvkkskgvvfdkskpvlddqtqksnyvkkskvddlWKDLVenpdkwwdnrldKVILYNLCF
MMYSLRRVMAQIGRSQTTVKRIILYSPAHFTRPFSSRAHQFtkattktttskDVVWPKPSEIPFQVKVANSVNLIGHVDAPVQFQTSSDGKHWAGTVIVQHAASHSLWIPILFEGDLAHIASSHLKKDDHVHIAGQLTADPPAIEGQANVQVMVHSLNLIEPTSQKRMFFVSKKQEAATVDHSVKISSSKKDGDSALSSWRDLLDNPEQWRDYRSDKLKGLVKPRYPDFKRKDGTLPLWLNSAPDWVLSELEGVVFDKSKPVLDDQTRKSNYVKKSKGVVFDKSKPVLDDQTQKSNYVKKSKVDDLWKDLVENPDKWWDNRLDKVILYNLCF
********MAQIGRSQTTVKRIILYSPAHFTRPFSS*AHQFT*******TSKDVVWPKPSEIPFQVKVANSVNLIGHVDAPVQFQTSSDGKHWAGTVIVQHAASHSLWIPILFEGDLAHIASSHLKKDDHVHIAGQLTADPPAIEGQANVQVMVHSLNLIEP*****MFF***************************************WRDYR*DKLKGLVKPRYPDFKRKDGTLPLWLNSAPDWVLSELEGVVFDK*****************************************KSKVDDLWKDLVENPDKWWDNRLDKVILYNLC*
***********************************************************SEIPFQVKVANSVNLIGHVDAPVQFQTSSDGKHWAGTVIVQHAASHSLWIPILFEGDLAHIASSHLKKDDHVHIAGQLTADPP**EGQANVQVMVH*********************************************RDLLDNPEQWRDYRS************DFKRKDGTLPLWLNSAPDWVLSELEGVVFD*************************************************WKDLVENPDKWWDNRLDKV*****CF
MMYSLRRVMAQIGRSQTTVKRIILYSPAHFTRPFSSRAHQFTKATTKTTTSKDVVWPKPSEIPFQVKVANSVNLIGHVDAPVQFQTSSDGKHWAGTVIVQHAASHSLWIPILFEGDLAHIASSHLKKDDHVHIAGQLTADPPAIEGQANVQVMVHSLNLIEPTSQKRMFFVSK************************SSWRDLLDNPEQWRDYRSDKLKGLVKPRYPDFKRKDGTLPLWLNSAPDWVLSELEGVVFDKSKPVLDDQTRKSNYVKKSKGVVFDKSKPVLDDQTQKSNYVKKSKVDDLWKDLVENPDKWWDNRLDKVILYNLCF
**YSLRRVMAQIGRSQTTVKRIILYSPAHF************************VWPKPSEIPFQVKVANSVNLIGHVDAPVQFQTSSDGKHWAGTVIVQHAASHSLWIPILFEGDLAHIASSHLKKDDHVHIAGQLTADPPAIEGQANVQVMVHSLNLIEPT******************************DSALSSWRDLLDNPEQWRDYRSDKLKGLVKPRYPDFKRKDGTLPLWLNSAPDWVLSELEGVVFD********************************************KVDDLWKDLVENPDKWWDNRLDKVILYNLCF
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
MMYSLRRVMAQIGRSQTTVKRIILYSPAHFTRPFSSRAHQFTKATTKTTTSKDVVWPKPSEIPFQVKVANSVNLIGHVDAPVQFQTSSDGKHWAGTVIVQHAASHSLWIPILFEGDLAHIASSHLKKDDHVHIAGQLTADPPAIEGQANVQVMVHSLNLIEPTSQKRMFFVSKKQEAATVDHSVKISSSKKDGDSALSSWRDLLDNPEQWRDYRSDKLKGLVKPRYPDFKRKDGTLPLWLNSAPDWVLSELEGVVFDKSKPVLDDQTRKSNYVKKSKGVVFDKSKPVLDDQTQKSNYVKKSKVDDLWKDLVENPDKWWDNRLDKVILYNLCF
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query332 2.2.26 [Sep-21-2011]
Q8GXH3371 Protein OSB2, chloroplast yes no 0.734 0.657 0.452 2e-60
Q8GWJ4440 Protein OSB3, chloroplast no no 0.798 0.602 0.381 1e-50
Q9FYJ2360 Protein OSB4, chloroplast no no 0.692 0.638 0.397 9e-49
Q9SX99261 Protein OSB1, mitochondri no no 0.623 0.793 0.278 3e-11
>sp|Q8GXH3|OSB2_ARATH Protein OSB2, chloroplastic OS=Arabidopsis thaliana GN=OSB2 PE=1 SV=2 Back     alignment and function desciption
 Score =  233 bits (593), Expect = 2e-60,   Method: Compositional matrix adjust.
 Identities = 132/292 (45%), Positives = 179/292 (61%), Gaps = 48/292 (16%)

Query: 44  ATTKTTTSKDVVWPKPSEIPFQVKVANSVNLIGHVDAPVQFQTSSDGKHWAGTVIVQHAA 103
           A+   TT  ++  P+P+EI ++ +VAN VNLIG VD PVQF+ SSDGK WAGTVI Q +A
Sbjct: 75  ASVTATTENEL--PRPNEIAYESEVANWVNLIGFVDQPVQFEASSDGKFWAGTVISQRSA 132

Query: 104 SHS--LWIPILFEGDLAHIASSHLKKDDHVHIAGQLTAD--PPAIE-GQANVQVMVHSLN 158
           S S   WIPI+FEGDLA  A+ ++ KDD +H++G+L  D  PP +   QANVQV+V +LN
Sbjct: 133 SDSSGFWIPIIFEGDLAKTAARYVSKDDQIHVSGKLFIDSPPPNMTYAQANVQVLVQNLN 192

Query: 159 LIEPTSQKRMFFV----SKKQEAATVDHSVKISSSKKDG--DSALSSWRDLLDNPEQWRD 212
            I+P S     F+    S+K+E+       +   +K+D   D A  SW  L++NP++W D
Sbjct: 193 FIQPMSPSPSPFMVMSSSEKEESGIKKQPAR---AKQDIVIDEASDSWNHLIENPKEWWD 249

Query: 213 YRSDKLKGLVKPRYPDFKRKDGTLPLWLNSAPDWVLSELEGVVFDKSKPVLDDQTRKSNY 272
           +R +K+ GLVKPR+PDFK KD +  LWLN AP+WVL +LEG+ FD   P           
Sbjct: 250 HRENKVNGLVKPRHPDFKSKDSSFSLWLNKAPNWVLPKLEGLEFDVLVP----------- 298

Query: 273 VKKSKGVVFDKSKPVLDDQTQKSNYVKKSKVDDLWKDLVENPDKWWDNRLDK 324
                                K+  VK+ K ++ WKDLV+NPDKWWDNR+DK
Sbjct: 299 ---------------------KARVVKQLKGEESWKDLVQNPDKWWDNRIDK 329
Binds preferentially single-stranded DNA. Does not bind to RNA.
Arabidopsis thaliana (taxid: 3702)
>sp|Q8GWJ4|OSB3_ARATH Protein OSB3, chloroplastic/mitochondrial OS=Arabidopsis thaliana GN=OSB3 PE=2 SV=1 Back     alignment and function description
>sp|Q9FYJ2|OSB4_ARATH Protein OSB4, chloroplastic OS=Arabidopsis thaliana GN=OSB4 PE=2 SV=1 Back     alignment and function description
>sp|Q9SX99|OSB1_ARATH Protein OSB1, mitochondrial OS=Arabidopsis thaliana GN=OSB1 PE=1 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query332
224121612354 predicted protein [Populus trichocarpa] 0.831 0.779 0.434 3e-59
79325179371 protein OSB2 [Arabidopsis thaliana] gi|3 0.743 0.665 0.449 4e-59
18415421371 protein OSB2 [Arabidopsis thaliana] gi|2 0.734 0.657 0.452 1e-58
297804136365 hypothetical protein ARALYDRAFT_492872 [ 0.707 0.643 0.461 2e-58
26451527371 unknown protein [Arabidopsis thaliana] 0.734 0.657 0.448 4e-58
297851580357 single-stranded DNA binding protein [Ara 0.852 0.792 0.358 2e-49
18422482 440 protein OSB3 [Arabidopsis thaliana] gi|7 0.798 0.602 0.381 7e-49
21537140 440 unknown [Arabidopsis thaliana] 0.798 0.602 0.381 8e-49
359806154309 uncharacterized protein LOC100788700 [Gl 0.689 0.741 0.447 8e-49
42573577 442 protein OSB3 [Arabidopsis thaliana] gi|3 0.798 0.599 0.378 1e-48
>gi|224121612|ref|XP_002330744.1| predicted protein [Populus trichocarpa] gi|222872520|gb|EEF09651.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
 Score =  234 bits (598), Expect = 3e-59,   Method: Compositional matrix adjust.
 Identities = 145/334 (43%), Positives = 184/334 (55%), Gaps = 58/334 (17%)

Query: 7   RVMAQIGRSQTTVKRI----ILYSPAHFTRPFSSRAHQFTKATTKTT------TSKDVVW 56
           RV+A+I  SQ T +RI    IL          + + H     T K T      +     +
Sbjct: 9   RVLAKIATSQPTTRRISPPLILLLQQSSCYSTNEKEHNPPTTTLKKTPPLYKKSPSSTDF 68

Query: 57  PKPSEIPFQVKVANSVNLIGHVDAPVQFQTSS-DGKHWAGTVIVQHAASHS--LWIPILF 113
           P+P EIPFQ KVANS+NLIG++D P+Q Q SS D K  A TVI Q  + HS  L IPI+F
Sbjct: 69  PRPKEIPFQAKVANSINLIGYIDMPIQTQVSSPDEKFRAATVITQEPSYHSPALRIPIIF 128

Query: 114 EGDLAHIASSHLKKDDHVHIAGQLTADPPA---IEGQANVQVMVHSLNLIEPTSQKRMFF 170
           EGDLAHIA+SHLKK D V+I GQL+ DPP    ++ Q  VQV+V+S+N IE + Q +   
Sbjct: 129 EGDLAHIAASHLKKGDFVYIDGQLSTDPPPFPEMQDQTQVQVLVNSINFIEGSFQVKKSI 188

Query: 171 VSKKQEAATVDHSVKISSSKKDGDSALSSWRDLLDNPEQWRDYRSDKLKGLVKPRYPDFK 230
           + ++ E    D          DG+S  +SW DLL+NP QW DYRS K  GLVKP++PDFK
Sbjct: 189 LEQQLEVPLDD----------DGESGSNSWTDLLENPNQWWDYRSSKRSGLVKPKHPDFK 238

Query: 231 RKDGTLPLWLNSAPDWVLSELEGVVFDKSKPVLDDQTRKSNYVKKSKGVVFDKSKPVLDD 290
            K+    +WL  AP W+ S LE V FD  K  L  QT                       
Sbjct: 239 HKNNNQSVWLTGAPSWIFSGLEKVKFD-VKTALPTQT----------------------- 274

Query: 291 QTQKSNYVKKSKVDDLWKDLVENPDKWWDNRLDK 324
                   K+ K ++ WKDLVENP KWWDNR+DK
Sbjct: 275 --------KQQKEEECWKDLVENPHKWWDNRVDK 300

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|79325179|ref|NP_001031674.1| protein OSB2 [Arabidopsis thaliana] gi|332658861|gb|AEE84261.1| protein OSB2 [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|18415421|ref|NP_567593.1| protein OSB2 [Arabidopsis thaliana] gi|259517764|sp|Q8GXH3.2|OSB2_ARATH RecName: Full=Protein OSB2, chloroplastic; AltName: Full=Organellar single-stranded DNA-binding protein 2; AltName: Full=Protein FLORAL ABSCISSION ASSOCIATED; AltName: Full=Protein PLASTID TRANSCRIPTIONALLY ACTIVE 9; Flags: Precursor gi|2827655|emb|CAA16609.1| hypothetical protein [Arabidopsis thaliana] gi|7268796|emb|CAB79001.1| hypothetical protein [Arabidopsis thaliana] gi|111074390|gb|ABH04568.1| At4g20010 [Arabidopsis thaliana] gi|332658860|gb|AEE84260.1| protein OSB2 [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|297804136|ref|XP_002869952.1| hypothetical protein ARALYDRAFT_492872 [Arabidopsis lyrata subsp. lyrata] gi|297315788|gb|EFH46211.1| hypothetical protein ARALYDRAFT_492872 [Arabidopsis lyrata subsp. lyrata] Back     alignment and taxonomy information
>gi|26451527|dbj|BAC42861.1| unknown protein [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|297851580|ref|XP_002893671.1| single-stranded DNA binding protein [Arabidopsis lyrata subsp. lyrata] gi|297339513|gb|EFH69930.1| single-stranded DNA binding protein [Arabidopsis lyrata subsp. lyrata] Back     alignment and taxonomy information
>gi|18422482|ref|NP_568639.1| protein OSB3 [Arabidopsis thaliana] gi|75328911|sp|Q8GWJ4.1|OSB3_ARATH RecName: Full=Protein OSB3, chloroplastic/mitochondrial; AltName: Full=Organellar single-stranded DNA-binding protein 3; Flags: Precursor gi|26452626|dbj|BAC43396.1| unknown protein [Arabidopsis thaliana] gi|28973013|gb|AAO63831.1| unknown protein [Arabidopsis thaliana] gi|30102734|gb|AAP21285.1| At5g44785 [Arabidopsis thaliana] gi|110743279|dbj|BAE99530.1| hypothetical protein [Arabidopsis thaliana] gi|332007779|gb|AED95162.1| protein OSB3 [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|21537140|gb|AAM61481.1| unknown [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|359806154|ref|NP_001241452.1| uncharacterized protein LOC100788700 [Glycine max] gi|255635066|gb|ACU17891.1| unknown [Glycine max] Back     alignment and taxonomy information
>gi|42573577|ref|NP_974885.1| protein OSB3 [Arabidopsis thaliana] gi|332007778|gb|AED95161.1| protein OSB3 [Arabidopsis thaliana] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query332
TAIR|locus:505006672442 OSB3 "organellar single-strand 0.713 0.536 0.414 1.1e-56
TAIR|locus:2119767371 PTAC9 "plastid transcriptional 0.647 0.579 0.491 1.9e-51
TAIR|locus:2015721360 OSB4 "organellar single-strand 0.617 0.569 0.367 2.1e-29
TAIR|locus:2015353261 OSB1 "Organellar Single-strand 0.623 0.793 0.291 4.1e-16
TAIR|locus:505006672 OSB3 "organellar single-stranded DNA binding protein 3" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 476 (172.6 bits), Expect = 1.1e-56, Sum P(2) = 1.1e-56
 Identities = 102/246 (41%), Positives = 151/246 (61%)

Query:    59 PSEIPFQVKVANSVNLIGHVDAPVQFQTSSDGKHWAGTVIVQHAASHS--LWIPILFEGD 116
             P +I ++ +++N +NLIG V+ PVQF   SDGK WAGTVI Q + S S   WIPI+FEGD
Sbjct:    71 PKKIEYKPEISNWINLIGFVEQPVQFGPCSDGKFWAGTVISQRSGSKSSNFWIPIIFEGD 130

Query:   117 LAHIASSHLKKDDHVHIAGQLTAD--PPAIE-GQANVQVMVHSLNLIEPTSQKRMFFVSK 173
             LA IA  H+KK+D +H++G+L  D  PP +   Q+NVQVMV +LN ++  +         
Sbjct:   131 LAKIAVQHVKKEDRIHVSGKLFIDSPPPNVTYSQSNVQVMVQNLNFVQAATSTTKTISPP 190

Query:   174 KQEAATVDHSVKISSSKKDGDSALS-SWRDLLDNPEQWRDYRSDKLKGLVKPRYPDFKRK 232
             ++E  ++      S   K  D   S SW+ L++NP++W D+R +K  GLVKP +PDFK K
Sbjct:   191 EKEVTSIKKKPARSKKVKVIDEETSNSWKHLIENPKEWLDHRGNKANGLVKPGHPDFKMK 250

Query:   233 DGTLPLWLNSAPDWVLSELEGVVFDKSKPVLDDQTRKSNYVKKS--KGVVFDKSKPVLDD 290
              G L LWL++APDW L +LE + FD   P  + +  +   + +   K +V +  K  LD+
Sbjct:   251 VGGLSLWLSTAPDWALLKLEELKFDVLVPKGNIKLNQLKDIGEESWKDLVQNPDK-WLDN 309

Query:   291 QTQKSN 296
             ++ K+N
Sbjct:   310 RSDKTN 315
GO:0003697 "single-stranded DNA binding" evidence=IEA
GO:0008150 "biological_process" evidence=ND
GO:0009507 "chloroplast" evidence=ISM;IDA
GO:0005739 "mitochondrion" evidence=IDA
TAIR|locus:2119767 PTAC9 "plastid transcriptionally active 9" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2015721 OSB4 "organellar single-stranded DNA binding protein 4" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2015353 OSB1 "Organellar Single-stranded" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
PTAC9
PTAC9 (PLASTID TRANSCRIPTIONALLY ACTIVE 9); single-stranded DNA binding; PLASTID TRANSCRIPTIONALLY ACTIVE 9 (PTAC9); FUNCTIONS IN- single-stranded DNA binding; INVOLVED IN- biological_process unknown; LOCATED IN- plastid chromosome, nucleoid; EXPRESSED IN- 23 plant structures; EXPRESSED DURING- 13 growth stages; CONTAINS InterPro DOMAIN/s- Nucleic acid-binding, OB-fold-like (InterPro-IPR016027), Nucleic acid-binding, OB-fold (InterPro-IPR012340), Primosome PriB/single-strand DNA-binding (InterPro-IPR000424); BEST Arabidopsis thaliana protein match is- OSB3 (ORGANELLAR SINGLE-STRANDED D [...] (371 aa)
(Arabidopsis thaliana)
Predicted Functional Partners:
AT5G22310
unknown protein; unknown protein; FUNCTIONS IN- molecular_function unknown; INVOLVED IN- biolog [...] (481 aa)
      • 0.716
PTAC7
PTAC7; PTAC7; FUNCTIONS IN- molecular_function unknown; INVOLVED IN- biological_process unknown [...] (161 aa)
   •  • 0.703
PTAC13
PTAC13 (PLASTID TRANSCRIPTIONALLY ACTIVE13); transcription elongation regulator; PLASTID TRANSC [...] (333 aa)
   •  • 0.703
AT3G10270
ATP binding / DNA binding / DNA topoisomerase (ATP-hydrolyzing); Protein targeting to mitochond [...] (693 aa)
      • 0.659
RPL29
ribosomal protein L29 family protein; ribosomal protein L29 family protein; FUNCTIONS IN- struc [...] (173 aa)
      • 0.657
RPL12-A
RPL12-A (RIBOSOMAL PROTEIN L12-A); structural constituent of ribosome; 50S ribosomal protein L1 [...] (191 aa)
      • 0.651
PTAC15
PTAC15 (PLASTID TRANSCRIPTIONALLY ACTIVE15); PLASTID TRANSCRIPTIONALLY ACTIVE15 (PTAC15); FUNCT [...] (500 aa)
      • 0.649
AT3G54090
pfkB-type carbohydrate kinase family protein; pfkB-type carbohydrate kinase family protein; FUN [...] (471 aa)
   •  • 0.606
PDE312
RNA binding; PIGMENT DEFECTIVE 312 (PDE312); FUNCTIONS IN- RNA binding; LOCATED IN- plastid chr [...] (697 aa)
   •  • 0.606
PTAC3
PTAC3 (PLASTID TRANSCRIPTIONALLY ACTIVE3); DNA binding / nucleic acid binding; PLASTID TRANSCRI [...] (913 aa)
      • 0.599

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 332
PRK06752112 single-stranded DNA-binding protein; Validated 99.95
PRK07275162 single-stranded DNA-binding protein; Provisional 99.95
PRK07459121 single-stranded DNA-binding protein; Provisional 99.95
PRK08486182 single-stranded DNA-binding protein; Provisional 99.94
PRK06751173 single-stranded DNA-binding protein; Provisional 99.94
PRK08182148 single-stranded DNA-binding protein; Provisional 99.93
PRK08763164 single-stranded DNA-binding protein; Provisional 99.93
PRK07274131 single-stranded DNA-binding protein; Provisional 99.93
PRK06642152 single-stranded DNA-binding protein; Provisional 99.93
PRK13732175 single-stranded DNA-binding protein; Provisional 99.92
PRK06293161 single-stranded DNA-binding protein; Provisional 99.92
PRK09010177 single-stranded DNA-binding protein; Provisional 99.92
PRK06958182 single-stranded DNA-binding protein; Provisional 99.91
PRK06863168 single-stranded DNA-binding protein; Provisional 99.91
PRK05733172 single-stranded DNA-binding protein; Provisional 99.91
TIGR00621164 ssb single stranded DNA-binding protein (ssb). Thi 99.9
PRK06341166 single-stranded DNA-binding protein; Provisional 99.9
PRK02801101 primosomal replication protein N; Provisional 99.9
PF00436104 SSB: Single-strand binding protein family; InterPr 99.89
PRK05813219 single-stranded DNA-binding protein; Provisional 99.89
COG0629167 Ssb Single-stranded DNA-binding protein [DNA repli 99.88
PRK07772186 single-stranded DNA-binding protein; Provisional 99.87
PRK05853161 hypothetical protein; Validated 99.82
cd04496100 SSB_OBF SSB_OBF: A subfamily of OB folds similar t 99.81
PRK05813219 single-stranded DNA-binding protein; Provisional 99.77
KOG1653175 consensus Single-stranded DNA-binding protein [Rep 99.61
PRK00036107 primosomal replication protein N; Reviewed 98.6
COG2965103 PriB Primosomal replication protein N [DNA replica 98.28
PF0133675 tRNA_anti-codon: OB-fold nucleic acid binding doma 97.51
cd0448978 ExoVII_LU_OBF ExoVII_LU_OBF: A subfamily of OB fol 97.3
cd0448773 RecJ_OBF2_like RecJ_OBF2_like: A subfamily of OB f 96.83
cd0449283 YhaM_OBF_like YhaM_OBF_like: A subfamily of OB fol 96.63
cd0448482 polC_OBF polC_OBF: A subfamily of OB folds corresp 96.6
cd0352475 RPA2_OBF_family RPA2_OBF_family: A family of oligo 96.54
cd04474104 RPA1_DBD_A RPA1_DBD_A: A subfamily of OB folds cor 96.36
cd0448584 DnaE_OBF DnaE_OBF: A subfamily of OB folds corresp 96.0
cd0448291 RPA2_OBF_like RPA2_OBF_like: A subgroup of unchara 95.34
PRK07211 485 replication factor A; Reviewed 95.18
PF1374299 tRNA_anti_2: OB-fold nucleic acid binding domain 94.44
cd0449079 PolII_SU_OBF PolII_SU_OBF: A subfamily of OB folds 94.19
cd0410085 Asp_Lys_Asn_RS_N Asp_Lys_Asn_RS_N: N-terminal, ant 93.54
PRK00286 438 xseA exodeoxyribonuclease VII large subunit; Revie 93.38
cd04320102 AspRS_cyto_N AspRS_cyto_N: N-terminal, anticodon r 92.94
cd04475101 RPA1_DBD_B RPA1_DBD_B: A subfamily of OB folds cor 92.9
cd0449182 SoSSB_OBF SoSSB_OBF: A subfamily of OB folds simil 92.8
PRK06461129 single-stranded DNA-binding protein; Reviewed 92.75
PRK15491374 replication factor A; Provisional 92.56
TIGR00237 432 xseA exodeoxyribonuclease VII, large subunit. This 92.55
PRK07373449 DNA polymerase III subunit alpha; Reviewed 92.45
cd04316108 ND_PkAspRS_like_N ND_PkAspRS_like_N: N-terminal, a 91.73
cd04317135 EcAspRS_like_N EcAspRS_like_N: N-terminal, anticod 91.7
PF11506104 DUF3217: Protein of unknown function (DUF3217); In 91.66
PRK07211485 replication factor A; Reviewed 91.29
PRK056731135 dnaE DNA polymerase III subunit alpha; Validated 91.23
PRK15491374 replication factor A; Provisional 91.11
cd0448875 RecG_wedge_OBF RecG_wedge_OBF: A subfamily of OB f 91.09
cd0432384 AsnRS_cyto_like_N AsnRS_cyto_like_N: N-terminal, a 91.01
PRK14699 484 replication factor A; Provisional 90.37
PRK13480314 3'-5' exoribonuclease YhaM; Provisional 89.73
PRK08402355 replication factor A; Reviewed 89.68
cd04322108 LysRS_N LysRS_N: N-terminal, anticodon recognition 89.6
cd04319103 PhAsnRS_like_N PhAsnRS_like_N: N-terminal, anticod 88.71
PRK12366637 replication factor A; Reviewed 88.08
COG1570 440 XseA Exonuclease VII, large subunit [DNA replicati 87.67
PRK069201107 dnaE DNA polymerase III DnaE; Reviewed 87.65
PRK073741170 dnaE DNA polymerase III subunit alpha; Validated 87.46
cd0432186 ScAspRS_mt_like_N ScAspRS_mt_like_N: N-terminal, a 87.45
PRK068261151 dnaE DNA polymerase III DnaE; Reviewed 86.77
PF1132584 DUF3127: Domain of unknown function (DUF3127); Int 86.67
PRK12366 637 replication factor A; Reviewed 86.45
COG3390196 Uncharacterized protein conserved in archaea [Func 85.9
cd0447895 RPA2_DBD_D RPA2_DBD_D: A subfamily of OB folds cor 85.15
PRK056721046 dnaE2 error-prone DNA polymerase; Validated 83.99
PRK00448 1437 polC DNA polymerase III PolC; Validated 83.71
TIGR00617 608 rpa1 replication factor-a protein 1 (rpa1). This f 82.92
PRK072791034 dnaE DNA polymerase III DnaE; Reviewed 82.11
cd04497138 hPOT1_OB1_like hPOT1_OB1_like: A subfamily of OB f 81.76
TIGR01405 1213 polC_Gram_pos DNA polymerase III, alpha chain, Gra 81.44
PRK14699484 replication factor A; Provisional 80.09
>PRK06752 single-stranded DNA-binding protein; Validated Back     alignment and domain information 
Probab=99.95  E-value=1.7e-27  Score=198.04  Aligned_cols=98  Identities=17%  Similarity=0.235  Sum_probs=90.8

Q ss_pred             ccceEEEEEEeCCCCeEEECCCCcEEEEEEEEEcCC-------CCCeeEEEEEeccHHHHHHhhcCCCCeEEEEEEeeec
Q 020012           68 VANSVNLIGHVDAPVQFQTSSDGKHWAGTVIVQHAA-------SHSLWIPILFEGDLAHIASSHLKKDDHVHIAGQLTAD  140 (332)
Q Consensus        68 l~NsV~LIGrLg~DPElr~T~sG~~vA~fsLAv~~~-------~~T~wI~VvaWGkLAE~~aqyLkKGD~V~VeGrL~t~  140 (332)
                      |||+|+|||||++|||++++++|+.+|.|+||+++.       .+++||+|++||++||.+++||+|||+|+|+|+|+++
T Consensus         1 MmN~v~liGrl~~dPelr~t~~G~~~~~f~lAv~~~~~~~~g~~~t~~~~v~~wg~~Ae~~~~~l~KG~~V~V~G~l~~~   80 (112)
T PRK06752          1 MMNRVVLIGRLTKEPELYYTKQGVAYARVCVAVNRGFRNSLGEQQVDFINCVVWRKSAENVTEYCTKGSLVGITGRIHTR   80 (112)
T ss_pred             CceEEEEEEECcCCCEEEECCCCCEEEEEEEEECCCeEcCCCCEEEEEEEEEEehHHHHHHHHhcCCCCEEEEEEEEEeC
Confidence            799999999999999999999999999999999862       2589999999999999999999999999999999999


Q ss_pred             CCCcC-C--eeEEEEEEeEEEEeccCCc
Q 020012          141 PPAIE-G--QANVQVMVHSLNLIEPTSQ  165 (332)
Q Consensus       141 syedk-g--rs~~eVvVe~I~FL~~k~~  165 (332)
                      +|+++ |  ++.++|+|++|.||+++..
T Consensus        81 ~~~~~~G~~~~~~ei~a~~i~~l~~~~~  108 (112)
T PRK06752         81 NYEDDQGKRIYITEVVIESITFLERRRE  108 (112)
T ss_pred             ccCCCCCcEEEEEEEEEEEEEECCCCCc
Confidence            99887 4  6678999999999987754

>PRK07275 single-stranded DNA-binding protein; Provisional Back     alignment and domain information
>PRK07459 single-stranded DNA-binding protein; Provisional Back     alignment and domain information
>PRK08486 single-stranded DNA-binding protein; Provisional Back     alignment and domain information
>PRK06751 single-stranded DNA-binding protein; Provisional Back     alignment and domain information
>PRK08182 single-stranded DNA-binding protein; Provisional Back     alignment and domain information
>PRK08763 single-stranded DNA-binding protein; Provisional Back     alignment and domain information
>PRK07274 single-stranded DNA-binding protein; Provisional Back     alignment and domain information
>PRK06642 single-stranded DNA-binding protein; Provisional Back     alignment and domain information
>PRK13732 single-stranded DNA-binding protein; Provisional Back     alignment and domain information
>PRK06293 single-stranded DNA-binding protein; Provisional Back     alignment and domain information
>PRK09010 single-stranded DNA-binding protein; Provisional Back     alignment and domain information
>PRK06958 single-stranded DNA-binding protein; Provisional Back     alignment and domain information
>PRK06863 single-stranded DNA-binding protein; Provisional Back     alignment and domain information
>PRK05733 single-stranded DNA-binding protein; Provisional Back     alignment and domain information
>TIGR00621 ssb single stranded DNA-binding protein (ssb) Back     alignment and domain information
>PRK06341 single-stranded DNA-binding protein; Provisional Back     alignment and domain information
>PRK02801 primosomal replication protein N; Provisional Back     alignment and domain information
>PF00436 SSB: Single-strand binding protein family; InterPro: IPR000424 The Escherichia coli single-strand binding protein [] (gene ssb), also known as the helix-destabilising protein, is a protein of 177 amino acids Back     alignment and domain information
>PRK05813 single-stranded DNA-binding protein; Provisional Back     alignment and domain information
>COG0629 Ssb Single-stranded DNA-binding protein [DNA replication, recombination, and repair] Back     alignment and domain information
>PRK07772 single-stranded DNA-binding protein; Provisional Back     alignment and domain information
>PRK05853 hypothetical protein; Validated Back     alignment and domain information
>cd04496 SSB_OBF SSB_OBF: A subfamily of OB folds similar to the OB fold of ssDNA-binding protein (SSB) Back     alignment and domain information
>PRK05813 single-stranded DNA-binding protein; Provisional Back     alignment and domain information
>KOG1653 consensus Single-stranded DNA-binding protein [Replication, recombination and repair] Back     alignment and domain information
>PRK00036 primosomal replication protein N; Reviewed Back     alignment and domain information
>COG2965 PriB Primosomal replication protein N [DNA replication, recombination, and repair] Back     alignment and domain information
>PF01336 tRNA_anti-codon: OB-fold nucleic acid binding domain; InterPro: IPR004365 The OB-fold (oligonucleotide/oligosaccharide-binding fold) is found in all three kingdoms and its common architecture presents a binding face that has adapted to bind different ligands Back     alignment and domain information
>cd04489 ExoVII_LU_OBF ExoVII_LU_OBF: A subfamily of OB folds corresponding to the N-terminal OB-fold domain of Escherichia coli exodeoxyribonuclease VII (ExoVII) large subunit Back     alignment and domain information
>cd04487 RecJ_OBF2_like RecJ_OBF2_like: A subfamily of OB folds corresponding to the second OB fold (OBF2) of archaeal-specific proteins with similarity to eubacterial RecJ Back     alignment and domain information
>cd04492 YhaM_OBF_like YhaM_OBF_like: A subfamily of OB folds similar to that found in Bacillus subtilis YhaM and Staphylococcus aureus cmp-binding factor-1 (SaCBF1) Back     alignment and domain information
>cd04484 polC_OBF polC_OBF: A subfamily of OB folds corresponding to the N-terminal OB-fold nucleic acid binding domain of Bacillus subtilis type C replicative DNA polymerase III alpha subunit (polC) Back     alignment and domain information
>cd03524 RPA2_OBF_family RPA2_OBF_family: A family of oligonucleotide binding (OB) folds with similarity to the OB fold of the single strand (ss) DNA-binding domain (DBD)-D of human RPA2 (also called RPA32) Back     alignment and domain information
>cd04474 RPA1_DBD_A RPA1_DBD_A: A subfamily of OB folds corresponding to the second OB fold, the ssDNA-binding domain (DBD)-A, of human RPA1 (also called RPA70) Back     alignment and domain information
>cd04485 DnaE_OBF DnaE_OBF: A subfamily of OB folds corresponding to the C-terminal OB-fold nucleic acid binding domain of Thermus aquaticus and Escherichia coli type C replicative DNA polymerase III alpha subunit (DnaE) Back     alignment and domain information
>cd04482 RPA2_OBF_like RPA2_OBF_like: A subgroup of uncharacterized archaeal OB folds with similarity to the OB fold of the central ssDNA-binding domain (DBD)-D of human RPA2 (also called RPA32) Back     alignment and domain information
>PRK07211 replication factor A; Reviewed Back     alignment and domain information
>PF13742 tRNA_anti_2: OB-fold nucleic acid binding domain Back     alignment and domain information
>cd04490 PolII_SU_OBF PolII_SU_OBF: A subfamily of OB folds corresponding to the OB fold found in Pyrococcus abyssi DNA polymerase II (PolII) small subunit Back     alignment and domain information
>cd04100 Asp_Lys_Asn_RS_N Asp_Lys_Asn_RS_N: N-terminal, anticodon recognition domain of class 2b aminoacyl-tRNA synthetases (aaRSs) Back     alignment and domain information
>PRK00286 xseA exodeoxyribonuclease VII large subunit; Reviewed Back     alignment and domain information
>cd04320 AspRS_cyto_N AspRS_cyto_N: N-terminal, anticodon recognition domain of the type found in Saccharomyces cerevisiae and human cytoplasmic aspartyl-tRNA synthetase (AspRS) Back     alignment and domain information
>cd04475 RPA1_DBD_B RPA1_DBD_B: A subfamily of OB folds corresponding to the third OB fold, the ssDNA-binding domain (DBD)-B, of human RPA1 (also called RPA70) Back     alignment and domain information
>cd04491 SoSSB_OBF SoSSB_OBF: A subfamily of OB folds similar to the OB fold of the crenarchaeote Sulfolobus solfataricus single-stranded (ss) DNA-binding protein (SSoSSB) Back     alignment and domain information
>PRK06461 single-stranded DNA-binding protein; Reviewed Back     alignment and domain information
>PRK15491 replication factor A; Provisional Back     alignment and domain information
>TIGR00237 xseA exodeoxyribonuclease VII, large subunit Back     alignment and domain information
>PRK07373 DNA polymerase III subunit alpha; Reviewed Back     alignment and domain information
>cd04316 ND_PkAspRS_like_N ND_PkAspRS_like_N: N-terminal, anticodon recognition domain of the type found in the homodimeric non-discriminating (ND) Pyrococcus kodakaraensis aspartyl-tRNA synthetase (AspRS) Back     alignment and domain information
>cd04317 EcAspRS_like_N EcAspRS_like_N: N-terminal, anticodon recognition domain of the type found in Escherichia coli aspartyl-tRNA synthetase (AspRS), the human mitochondrial (mt) AspRS-2, the discriminating (D) Thermus thermophilus AspRS-1, and the nondiscriminating (ND) Helicobacter pylori AspRS Back     alignment and domain information
>PF11506 DUF3217: Protein of unknown function (DUF3217); InterPro: IPR024506 This family of proteins with unknown function appears to be restricted to Mycoplasma Back     alignment and domain information
>PRK07211 replication factor A; Reviewed Back     alignment and domain information
>PRK05673 dnaE DNA polymerase III subunit alpha; Validated Back     alignment and domain information
>PRK15491 replication factor A; Provisional Back     alignment and domain information
>cd04488 RecG_wedge_OBF RecG_wedge_OBF: A subfamily of OB folds corresponding to the OB fold found in the N-terminal (wedge) domain of Escherichia coli RecG Back     alignment and domain information
>cd04323 AsnRS_cyto_like_N AsnRS_cyto_like_N: N-terminal, anticodon recognition domain of the type found in human and Saccharomyces cerevisiae cytoplasmic asparaginyl-tRNA synthetase (AsnRS), in Brugia malayai AsnRs and, in various putative bacterial AsnRSs Back     alignment and domain information
>PRK14699 replication factor A; Provisional Back     alignment and domain information
>PRK13480 3'-5' exoribonuclease YhaM; Provisional Back     alignment and domain information
>PRK08402 replication factor A; Reviewed Back     alignment and domain information
>cd04322 LysRS_N LysRS_N: N-terminal, anticodon recognition domain of lysyl-tRNA synthetases (LysRS) Back     alignment and domain information
>cd04319 PhAsnRS_like_N PhAsnRS_like_N: N-terminal, anticodon recognition domain of the type found in Pyrococcus horikoshii AsnRS asparaginyl-tRNA synthetase (AsnRS) Back     alignment and domain information
>PRK12366 replication factor A; Reviewed Back     alignment and domain information
>COG1570 XseA Exonuclease VII, large subunit [DNA replication, recombination, and repair] Back     alignment and domain information
>PRK06920 dnaE DNA polymerase III DnaE; Reviewed Back     alignment and domain information
>PRK07374 dnaE DNA polymerase III subunit alpha; Validated Back     alignment and domain information
>cd04321 ScAspRS_mt_like_N ScAspRS_mt_like_N: N-terminal, anticodon recognition domain of the type found in Saccharomyces cerevisiae mitochondrial (mt) aspartyl-tRNA synthetase (AspRS) Back     alignment and domain information
>PRK06826 dnaE DNA polymerase III DnaE; Reviewed Back     alignment and domain information
>PF11325 DUF3127: Domain of unknown function (DUF3127); InterPro: IPR021474 This bacterial family of proteins has no known function Back     alignment and domain information
>PRK12366 replication factor A; Reviewed Back     alignment and domain information
>COG3390 Uncharacterized protein conserved in archaea [Function unknown] Back     alignment and domain information
>cd04478 RPA2_DBD_D RPA2_DBD_D: A subfamily of OB folds corresponding to the OB fold of the central ssDNA-binding domain (DBD)-D of human RPA2 (also called RPA32) Back     alignment and domain information
>PRK05672 dnaE2 error-prone DNA polymerase; Validated Back     alignment and domain information
>PRK00448 polC DNA polymerase III PolC; Validated Back     alignment and domain information
>TIGR00617 rpa1 replication factor-a protein 1 (rpa1) Back     alignment and domain information
>PRK07279 dnaE DNA polymerase III DnaE; Reviewed Back     alignment and domain information
>cd04497 hPOT1_OB1_like hPOT1_OB1_like: A subfamily of OB folds similar to the first OB fold (OB1) of human protection of telomeres 1 protein (hPOT1), the single OB fold of the N-terminal domain of Schizosaccharomyces pombe POT1 (SpPOT1), and the first OB fold of the N-terminal domain of the alpha subunit (OB1Nalpha) of Oxytricha nova telomere end binding protein (OnTEBP) Back     alignment and domain information
>TIGR01405 polC_Gram_pos DNA polymerase III, alpha chain, Gram-positive type Back     alignment and domain information
>PRK14699 replication factor A; Provisional Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query332
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 5e-04
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
 Score = 41.0 bits (95), Expect = 5e-04
 Identities = 17/144 (11%), Positives = 46/144 (31%), Gaps = 34/144 (23%)

Query: 201 RDLLDNPEQWRDYRSDKLKGLV------------KPRYPDFK--RKDGTLP------LWL 240
           RD L   + W+    DKL  ++            +  +           +P      +W 
Sbjct: 338 RDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHIPTILLSLIWF 397

Query: 241 NSA---PDWVLSELEGVVFDKSKPVLDDQTRKSNYVKKSKGVVFDKSKPVLDDQT-QKS- 295
           +        V+++L          +++ Q ++S        +  +    + ++    +S 
Sbjct: 398 DVIKSDVMVVVNKLH------KYSLVEKQPKESTI--SIPSIYLELKVKLENEYALHRSI 449

Query: 296 -NYVKKSKVDDLWKDLVENPDKWW 318
            ++    K  D    +    D+++
Sbjct: 450 VDHYNIPKTFDSDDLIPPYLDQYF 473

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query332
3koj_A108 Uncharacterized protein YCF41; single-strand bindi 99.95
3vdy_A116 SSB, single-stranded DNA-binding protein SSBB; OB 99.94
3ull_A132 DNA binding protein; DNA replication, mitochondrio 99.93
2vw9_A134 Single-stranded DNA binding protein; DNA replicati 99.93
3ulp_A124 Single-strand binding protein; OB-fold, DNA bindin 99.93
1z9f_A153 Single-strand binding protein; TM0604, single stra 99.93
1txy_A104 Primosomal replication protein N; OB fold, dimer, 99.93
1qvc_A145 Single stranded DNA binding protein monomer; beta- 99.93
3tqy_A158 Single-stranded DNA-binding protein; DNA replicati 99.92
1v1q_A134 Primosomal replication protein N; primosome, DNA r 99.92
3lgj_A169 Single-stranded DNA-binding protein; niaid, CAT sc 99.92
4gs3_A107 Single-stranded DNA-binding protein; primosome, ol 99.91
3pgz_A193 Single-stranded DNA-binding protein; ssgcid, singl 99.91
4dam_A128 Single-stranded DNA-binding protein 1; OB-fold; 1. 99.91
3afp_A168 Single-stranded DNA-binding protein; OB-fold, quat 99.91
1eqq_A178 Single stranded DNA binding protein; beta barrel, 99.9
3fhw_A115 Primosomal replication protein N; PRIB BPR162 X-RA 99.9
3k7u_C148 MP18 RNA editing complex protein; OB-fold, RNA-edi 99.9
3k81_C164 MP18 RNA editing complex protein; krepa6, single d 99.9
3k8a_A103 Putative primosomal replication protein; beta-barr 99.89
3eiv_A199 Single-stranded DNA-binding protein 2; DNA damage, 99.89
2fxq_A264 Single-strand binding protein; strand beta-sheet e 99.89
1se8_A301 Single-strand binding protein; DNA binding protein 99.88
2fxq_A264 Single-strand binding protein; strand beta-sheet e 99.88
1se8_A301 Single-strand binding protein; DNA binding protein 99.86
3en2_A101 Probable primosomal replication protein N; PRIB RS 99.84
4dni_A257 Fusion protein of RNA-editing complex proteins MP 99.82
4dni_A257 Fusion protein of RNA-editing complex proteins MP 99.77
3stb_C148 RNA-editing complex protein MP42; editosome, nanob 99.71
4dka_C105 RNA-editing complex protein MP81; krepa1, VHH, sin 97.39
2k50_A115 Replication factor A related protein; uncharacteri 96.56
3e0e_A97 Replication protein A; structural genomics, PSI-2, 96.45
3dm3_A105 Replication factor A; probably plays AN essential 96.23
1o7i_A119 SSB, SSO2364, single stranded DNA binding protein; 95.12
1ynx_A114 Replication factor-A protein 1; canonical OB fold, 94.4
2k75_A106 Uncharacterized protein TA0387; closed beta barrel 94.3
2hql_A110 Hypothetical protein Mg376 homolog; structural gen 91.81
3f2b_A 1041 DNA-directed DNA polymerase III alpha chain; DNA p 91.35
4gop_B136 Putative uncharacterized protein; OB fold, ssDNA b 89.87
3kdf_D132 Replication protein A 32 kDa subunit; wheat GERM c 89.48
1jmc_A246 Protein (replication protein A (RPA)); human ssDNA 86.57
1eov_A 487 ASPRS, aspartyl-tRNA synthetase; aminoacyl tRNA sy 86.52
2hpi_A1220 DNA polymerase III alpha subunit; POL-beta-like nu 84.99
4gop_C 444 Putative uncharacterized protein; OB fold, ssDNA b 84.42
1wjj_A145 Hypothetical protein F20O9.120; DNA-binding protei 82.63
2pi2_A270 Replication protein A 32 kDa subunit; FULL-length 81.63
3m4p_A 456 Ehasnrs, asparaginyl-tRNA synthetase, putative; am 80.92
2xgt_A 435 Asparaginyl-tRNA synthetase, cytoplasmic; ligase, 80.44
>3koj_A Uncharacterized protein YCF41; single-strand binding protein family, PF00436, SNR59A, NESG, structural genomics, PSI-2; 1.90A {Synechococcus elongatus pcc 6301} Back     alignment and structure
Probab=99.95  E-value=2e-27  Score=197.09  Aligned_cols=91  Identities=16%  Similarity=0.161  Sum_probs=80.2

Q ss_pred             ccceEEEEEEeCCCCeEEECCCC-cEEEEEEEEEcC---CCCCeeEEEEEeccHHHHHHhhcCCCCeEEEEEEeeecCCC
Q 020012           68 VANSVNLIGHVDAPVQFQTSSDG-KHWAGTVIVQHA---ASHSLWIPILFEGDLAHIASSHLKKDDHVHIAGQLTADPPA  143 (332)
Q Consensus        68 l~NsV~LIGrLg~DPElr~T~sG-~~vA~fsLAv~~---~~~T~wI~VvaWGkLAE~~aqyLkKGD~V~VeGrL~t~sye  143 (332)
                      -||+|+|||||++|||+|+|++| .++|+|+||+++   .++|+||+|++||++||.|++||+|||+|+|+|+|++++|+
T Consensus        10 ~~~~v~LiGrL~~DPelR~t~~g~~~va~f~lAv~~~~~~~~t~fi~vv~wgk~AE~~~~yl~KG~~V~VeGrL~~r~y~   89 (108)
T 3koj_A           10 HMNSCILQATVVEAPQLRYAQDNQTPVAEMVVQFPGLSSKDAPARLKVVGWGAVAQELQDRCRLNDEVVLEGRLRINSLL   89 (108)
T ss_dssp             SCEEEEEEEEEEEEEEEEECTTSSSEEEEEEEEECC-----CCEEEEEEEETHHHHHHHHHCCTTCEEEEEEEEEEEC--
T ss_pred             ccceEEEEEEECCCCEEEEeCCCCEEEEEEEEEECCcccCCCcEEEEEEEEhHHHHHHHHhCCCCCEEEEEEEEEeeeEE
Confidence            48999999999999999999998 999999999984   24789999999999999999999999999999999999999


Q ss_pred             cC---CeeEEEEEEeEEE
Q 020012          144 IE---GQANVQVMVHSLN  158 (332)
Q Consensus       144 dk---grs~~eVvVe~I~  158 (332)
                      ++   .++.+||+|++|.
T Consensus        90 ~kdG~kr~~tEVva~~i~  107 (108)
T 3koj_A           90 KPDGNREKQTELTVTRVH  107 (108)
T ss_dssp             ------CCEEEEEEEEEE
T ss_pred             CCCCCEEEEEEEEEEEEE
Confidence            86   4788999999874
>3vdy_A SSB, single-stranded DNA-binding protein SSBB; OB fold; 2.80A {Bacillus subtilis} Back     alignment and structure
>3ull_A DNA binding protein; DNA replication, mitochondrion, transit peptide; HET: DNA; 2.40A {Homo sapiens} SCOP: b.40.4.3 PDB: 1s3o_A* 2dud_A Back     alignment and structure
>2vw9_A Single-stranded DNA binding protein; DNA replication, single-stranded DNA, single-stranded DNA binding protein, oligonucleotide/oligosaccharide binding fold, OB-fold; 2.30A {Helicobacter pylori} Back     alignment and structure
>3ulp_A Single-strand binding protein; OB-fold, DNA binding, single-stranded DNA, apicoplast, DNA B protein-DNA complex; HET: DNA; 2.10A {Plasmodium falciparum} Back     alignment and structure
>1z9f_A Single-strand binding protein; TM0604, single stranded DNA-binding protein, structural GENO joint center for structural genomics, JCSG; 2.30A {Thermotoga maritima} Back     alignment and structure
>1txy_A Primosomal replication protein N; OB fold, dimer, DNA binding protein; 2.00A {Escherichia coli} SCOP: b.40.4.3 PDB: 1woc_A 2pnh_A 4apv_A Back     alignment and structure
>1qvc_A Single stranded DNA binding protein monomer; beta-barrel; 2.20A {Escherichia coli} SCOP: b.40.4.3 PDB: 1kaw_A 1eyg_A 1sru_A Back     alignment and structure
>3tqy_A Single-stranded DNA-binding protein; DNA replication, transferase; 2.60A {Coxiella burnetii} Back     alignment and structure
>1v1q_A Primosomal replication protein N; primosome, DNA replication, DNA binding; 2.1A {Escherichia coli} SCOP: b.40.4.3 PDB: 2ccz_A Back     alignment and structure
>3lgj_A Single-stranded DNA-binding protein; niaid, CAT scratch fever, rochalimaea, LYME disease, ALS collaborative crystallography, DNA replication; 2.50A {Bartonella henselae} Back     alignment and structure
>4gs3_A Single-stranded DNA-binding protein; primosome, oligonucleotide/oligosaccharide binding domain, D binding protein; 1.09A {Thermoanaerobacter tengcongensis} Back     alignment and structure
>3pgz_A Single-stranded DNA-binding protein; ssgcid, single-strand binding protein, structural genomics center for infectious disease; 2.10A {Bartonella henselae} Back     alignment and structure
>4dam_A Single-stranded DNA-binding protein 1; OB-fold; 1.70A {Streptomyces coelicolor} Back     alignment and structure
>3afp_A Single-stranded DNA-binding protein; OB-fold, quaternary structure and stability, changes on oligomerisation, water-bridges, DNA damage; 2.05A {Mycobacterium leprae} PDB: 3afq_A 1ue1_A 1ue5_A 1ue6_A 1ue7_A 1x3e_A 1x3f_A 1x3g_A 3a5u_A* Back     alignment and structure
>1eqq_A Single stranded DNA binding protein; beta barrel, protein-DNA complex, replication/RNA complex; HET: 5MU; 3.20A {Escherichia coli} SCOP: b.40.4.3 Back     alignment and structure
>3fhw_A Primosomal replication protein N; PRIB BPR162 X-RAY NESG, structural genomics, PSI-2, protein initiative; 1.90A {Bordetella parapertussis} PDB: 3dm4_A 3klw_A Back     alignment and structure
>3k7u_C MP18 RNA editing complex protein; OB-fold, RNA-editing proteins, kinetoplastids, system, RNA binding protein; 2.10A {Trypanosoma brucei} PDB: 3k80_D 3stb_D Back     alignment and structure
>3k81_C MP18 RNA editing complex protein; krepa6, single domain antibody, immune system, RNA BIND protein; 3.40A {Trypanosoma brucei} Back     alignment and structure
>3k8a_A Putative primosomal replication protein; beta-barrel, OB-fold, DNA binding protein; 2.70A {Neisseria gonorrhoeae fa 1090} Back     alignment and structure
>3eiv_A Single-stranded DNA-binding protein 2; DNA damage, DNA repair, DNA replication, phosphoprotein; 2.14A {Streptomyces coelicolor} Back     alignment and structure
>2fxq_A Single-strand binding protein; strand beta-sheet extended loops, DNA binding protein; 1.85A {Thermus aquaticus} PDB: 2ihe_A 2cwa_A 2ihf_A Back     alignment and structure
>1se8_A Single-strand binding protein; DNA binding protein; 1.80A {Deinococcus radiodurans} SCOP: b.40.4.3 Back     alignment and structure
>2fxq_A Single-strand binding protein; strand beta-sheet extended loops, DNA binding protein; 1.85A {Thermus aquaticus} PDB: 2ihe_A 2cwa_A 2ihf_A Back     alignment and structure
>1se8_A Single-strand binding protein; DNA binding protein; 1.80A {Deinococcus radiodurans} SCOP: b.40.4.3 Back     alignment and structure
>3en2_A Probable primosomal replication protein N; PRIB RSR213C NESG X-RAY Q8XZT7 Q8XZT7_ralso, structural genomics, PSI-2; 2.30A {Ralstonia solanacearum} Back     alignment and structure
>4dni_A Fusion protein of RNA-editing complex proteins MP MP18; krepa3, krepa6, editosome, protein/RNA binding, protein BIND binding protein; 2.55A {Trypanosoma brucei} Back     alignment and structure
>4dni_A Fusion protein of RNA-editing complex proteins MP MP18; krepa3, krepa6, editosome, protein/RNA binding, protein BIND binding protein; 2.55A {Trypanosoma brucei} Back     alignment and structure
>3stb_C RNA-editing complex protein MP42; editosome, nanobody, single domain antibody, VH krepa3, krepa6, RNA binding protein-immune system complex; 2.50A {Trypanosoma brucei} Back     alignment and structure
>4dka_C RNA-editing complex protein MP81; krepa1, VHH, single domain antibody, protein binding, RNA BI protein-immune system complex; 1.97A {Trypanosoma brucei} PDB: 4dk3_C 4dk6_C Back     alignment and structure
>2k50_A Replication factor A related protein; uncharacterized protein, structural genomics, PSI-2; NMR {Methanothermobacterthermautotrophicus str} Back     alignment and structure
>3e0e_A Replication protein A; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 1.60A {Methanococcus maripaludis} PDB: 2k5v_A Back     alignment and structure
>3dm3_A Replication factor A; probably plays AN essential for replication of the chromosome, DNA recombination and repair; 2.40A {Methanocaldococcus jannaschii} Back     alignment and structure
>1o7i_A SSB, SSO2364, single stranded DNA binding protein; OB fold; 1.2A {Sulfolobus solfataricus} SCOP: b.40.4.3 Back     alignment and structure
>1ynx_A Replication factor-A protein 1; canonical OB fold, DNA binding protein; NMR {Saccharomyces cerevisiae} Back     alignment and structure
>2k75_A Uncharacterized protein TA0387; closed beta barrel, OB fold, structural genomics, PSI-2, protein structure initiative; NMR {Thermoplasma acidophilum} Back     alignment and structure
>2hql_A Hypothetical protein Mg376 homolog; structural genomics, conserved hypothetical protein, GI:1673959, MPN554, OB fold; 2.00A {Mycoplasma pneumoniae} Back     alignment and structure
>3f2b_A DNA-directed DNA polymerase III alpha chain; DNA polymerase C, DNA polymerase III; HET: DGT; 2.39A {Geobacillus kaustophilus} PDB: 3f2c_A* 3f2d_A* Back     alignment and structure
>4gop_B Putative uncharacterized protein; OB fold, ssDNA binding, DNA binding protein-DNA complex; HET: DNA; 3.10A {Ustilago maydis} Back     alignment and structure
>3kdf_D Replication protein A 32 kDa subunit; wheat GERM cell free, protein complex, center for eukaryotic structural genomics, PSI; HET: MSE; 1.98A {Homo sapiens} SCOP: b.40.4.3 PDB: 2pqa_A 1quq_A 1l1o_B Back     alignment and structure
>1jmc_A Protein (replication protein A (RPA)); human ssDNA binding replication protein A(RPA), single stranded DNA-binding protein, protein-ssDNA complex; HET: DNA; 2.40A {Homo sapiens} SCOP: b.40.4.3 b.40.4.3 PDB: 1fgu_A Back     alignment and structure
>1eov_A ASPRS, aspartyl-tRNA synthetase; aminoacyl tRNA synthetase, tRNA ligase, APO-enzyme, OB-fold,; 2.30A {Saccharomyces cerevisiae} SCOP: b.40.4.1 d.104.1.1 PDB: 1asy_A* 1asz_A* Back     alignment and structure
>2hpi_A DNA polymerase III alpha subunit; POL-beta-like nucleotidyltransferase fold, transferase; HET: DNA; 3.00A {Thermus aquaticus} PDB: 2hpm_A* 3e0d_A* Back     alignment and structure
>4gop_C Putative uncharacterized protein; OB fold, ssDNA binding, DNA binding protein-DNA complex; HET: DNA; 3.10A {Ustilago maydis} Back     alignment and structure
>1wjj_A Hypothetical protein F20O9.120; DNA-binding protein-related, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: b.40.4.3 Back     alignment and structure
>2pi2_A Replication protein A 32 kDa subunit; FULL-length RPA14/32, ssDNA binding protein, OB-fold, dioxan replication, DNA binding protein; 2.00A {Homo sapiens} SCOP: b.40.4.3 PDB: 2z6k_A 1dpu_A 1z1d_A Back     alignment and structure
>3m4p_A Ehasnrs, asparaginyl-tRNA synthetase, putative; aminoacyl-tRNA synthetase, tRNA ligase, AARS, translation, ATP-binding, nucleotide-binding; HET: 4AD; 2.83A {Entamoeba histolytica} PDB: 3m4q_A Back     alignment and structure
>2xgt_A Asparaginyl-tRNA synthetase, cytoplasmic; ligase, ATP-binding, protein biosynthesis; HET: NSS; 1.90A {Brugia malayi} PDB: 2xti_A* Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 332
d1v1qa_111 b.40.4.3 (A:) Primosomal replication protein N, Pr 0.001
>d1v1qa_ b.40.4.3 (A:) Primosomal replication protein N, PriB {Escherichia coli [TaxId: 562]} Length = 111 Back     information, alignment and structure

class: All beta proteins
fold: OB-fold
superfamily: Nucleic acid-binding proteins
family: Single strand DNA-binding domain, SSB
domain: Primosomal replication protein N, PriB
species: Escherichia coli [TaxId: 562]

 Score = 36.0 bits (83), Expect = 0.001
 Identities = 11/77 (14%), Positives = 27/77 (35%), Gaps = 8/77 (10%)

Query: 70  NSVNLIGHV-DAPVQFQTSSDGKHWAGTVIVQHAASHS-------LWIPILFEGDLAHIA 121
           N + L G V  AP++  + S   H    +  +     +         +P++  G      
Sbjct: 7   NRLVLSGTVCRAPLRKVSPSGIPHCQFVLEHRSVQEEAGFHRQAWCQMPVIVSGHENQAI 66

Query: 122 SSHLKKDDHVHIAGQLT 138
           +  +     + + G ++
Sbjct: 67  THSITVGSRITVQGFIS 83

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query332
d1qvca_145 ssDNA-binding protein {Escherichia coli [TaxId: 56 99.92
d3ulla_115 ssDNA-binding protein {Human (Homo sapiens), mitoc 99.92
d1ue1a_118 ssDNA-binding protein {Mycobacterium tuberculosis 99.91
d1v1qa_111 Primosomal replication protein N, PriB {Escherichi 99.9
d1se8a_231 ssDNA-binding protein {Deinococcus radiodurans [Ta 99.88
d1se8a_231 ssDNA-binding protein {Deinococcus radiodurans [Ta 99.88
d1jmca1116 Replication protein A 70 KDa subunit (RPA70) {Huma 94.41
d1o7ia_115 Archaeal ssDNA-binding protein {Archaeon Sulfolobu 94.39
d1eova1134 Aspartyl-tRNA synthetase (AspRS) {Baker's yeast (S 94.04
d1b8aa1103 Aspartyl-tRNA synthetase (AspRS) {Archaeon Pyrococ 92.17
d1c0aa1106 Aspartyl-tRNA synthetase (AspRS) {Escherichia coli 87.63
d1wjja_145 Hypothetical protein At4g28440 (F20O9.120) {Thale 86.25
d1l0wa1104 Aspartyl-tRNA synthetase (AspRS) {Thermus thermoph 83.89
d1gm5a2180 RecG "wedge" domain {Thermotoga maritima [TaxId: 2 82.48
>d1qvca_ b.40.4.3 (A:) ssDNA-binding protein {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
class: All beta proteins
fold: OB-fold
superfamily: Nucleic acid-binding proteins
family: Single strand DNA-binding domain, SSB
domain: ssDNA-binding protein
species: Escherichia coli [TaxId: 562]

Probab=99.92  E-value=2.3e-25  Score=188.98  Aligned_cols=98  Identities=22%  Similarity=0.381  Sum_probs=87.8

Q ss_pred             cccceEEEEEEeCCCCeEEECCCCcEEEEEEEEEcCC----------CCCeeEEEEEeccHHHHHHhhcCCCCeEEEEEE
Q 020012           67 KVANSVNLIGHVDAPVQFQTSSDGKHWAGTVIVQHAA----------SHSLWIPILFEGDLAHIASSHLKKDDHVHIAGQ  136 (332)
Q Consensus        67 ~l~NsV~LIGrLg~DPElr~T~sG~~vA~fsLAv~~~----------~~T~wI~VvaWGkLAE~~aqyLkKGD~V~VeGr  136 (332)
                      +-||+|+|||||++|||++++++|..+|.|+||+++.          ++|+||+|++||++||.+++||+|||+|+|+|+
T Consensus         3 ~~mN~v~LiG~l~~dpe~r~~~~G~~v~~f~va~~~~~~~~~~~~~~~~t~w~~v~~~g~~Ae~~~~~l~KG~~V~V~G~   82 (145)
T d1qvca_           3 RGVNKVILVGNLGQDPEVRYMPNGGAVANITLATSESWRDKATGEMKEQTEWHRVVLFGKLAEVASEYLRKGSQVYIEGQ   82 (145)
T ss_dssp             CCEEEEEEEEEESSCCEEECCSSSCCEEEEEEEECCCCSCCSSSSCCCCCEEEEEEEETHHHHHHHHHCCTTCEEEEEEE
T ss_pred             CcceEEEEEEECCCCCEEEECCCCCEEEEEEEEecccccccccccccccceEEeeEEecchhhhHhhhcccCCEEEEEEE
Confidence            5699999999999999999999999999999999751          368999999999999999999999999999999


Q ss_pred             eeecCCCcC-C--eeEEEEEEe---EEEEeccCC
Q 020012          137 LTADPPAIE-G--QANVQVMVH---SLNLIEPTS  164 (332)
Q Consensus       137 L~t~syedk-g--rs~~eVvVe---~I~FL~~k~  164 (332)
                      |+++.|+++ |  ++.++|+|+   .|.|+.++.
T Consensus        83 l~~~~~~~kdG~~r~~~ei~~~~~~~l~~l~~r~  116 (145)
T d1qvca_          83 LRTRKWTDQSGQDRYTTEVVVNVGGTMQMLGGRQ  116 (145)
T ss_dssp             EEEEEECSSSSCEEEEEEEECTTCEEEECCCCSC
T ss_pred             EEEeeeECCCCCEEEEEEEEEecCCcEEECcCcc
Confidence            999999987 4  667899997   566666554
>d3ulla_ b.40.4.3 (A:) ssDNA-binding protein {Human (Homo sapiens), mitochondria [TaxId: 9606]} Back     information, alignment and structure
>d1ue1a_ b.40.4.3 (A:) ssDNA-binding protein {Mycobacterium tuberculosis [TaxId: 1773]} Back     information, alignment and structure
>d1v1qa_ b.40.4.3 (A:) Primosomal replication protein N, PriB {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1se8a_ b.40.4.3 (A:) ssDNA-binding protein {Deinococcus radiodurans [TaxId: 1299]} Back     information, alignment and structure
>d1se8a_ b.40.4.3 (A:) ssDNA-binding protein {Deinococcus radiodurans [TaxId: 1299]} Back     information, alignment and structure
>d1jmca1 b.40.4.3 (A:183-298) Replication protein A 70 KDa subunit (RPA70) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1o7ia_ b.40.4.3 (A:) Archaeal ssDNA-binding protein {Archaeon Sulfolobus solfataricus [TaxId: 2287]} Back     information, alignment and structure
>d1eova1 b.40.4.1 (A:71-204) Aspartyl-tRNA synthetase (AspRS) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1b8aa1 b.40.4.1 (A:1-103) Aspartyl-tRNA synthetase (AspRS) {Archaeon Pyrococcus kodakaraensis [TaxId: 311400]} Back     information, alignment and structure
>d1c0aa1 b.40.4.1 (A:1-106) Aspartyl-tRNA synthetase (AspRS) {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1wjja_ b.40.4.3 (A:) Hypothetical protein At4g28440 (F20O9.120) {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Back     information, alignment and structure
>d1l0wa1 b.40.4.1 (A:1-104) Aspartyl-tRNA synthetase (AspRS) {Thermus thermophilus, AspRS-1 [TaxId: 274]} Back     information, alignment and structure
>d1gm5a2 b.40.4.9 (A:106-285) RecG "wedge" domain {Thermotoga maritima [TaxId: 2336]} Back     information, alignment and structure