Citrus Sinensis ID: 020013
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
|---|
|
|
Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 332 | 2.2.26 [Sep-21-2011] | |||||||
| A8Z1H7 | 355 | Probable nitronate monoox | yes | no | 0.828 | 0.774 | 0.310 | 5e-28 | |
| A6QFD2 | 355 | Probable nitronate monoox | yes | no | 0.828 | 0.774 | 0.310 | 5e-28 | |
| Q5HHG4 | 355 | Probable nitronate monoox | yes | no | 0.828 | 0.774 | 0.310 | 5e-28 | |
| Q2FZX9 | 355 | Probable nitronate monoox | yes | no | 0.828 | 0.774 | 0.310 | 5e-28 | |
| Q2FIF3 | 355 | Probable nitronate monoox | N/A | no | 0.828 | 0.774 | 0.310 | 5e-28 | |
| Q6GB05 | 355 | Probable nitronate monoox | yes | no | 0.849 | 0.794 | 0.300 | 3e-27 | |
| O05413 | 347 | Probable nitronate monoox | yes | no | 0.855 | 0.818 | 0.269 | 3e-27 | |
| Q6GIG7 | 355 | Probable nitronate monoox | yes | no | 0.828 | 0.774 | 0.301 | 1e-26 | |
| Q99VF6 | 355 | Probable nitronate monoox | yes | no | 0.828 | 0.774 | 0.301 | 2e-26 | |
| A5IR97 | 355 | Probable nitronate monoox | yes | no | 0.828 | 0.774 | 0.301 | 2e-26 |
| >sp|A8Z1H7|2NPD_STAAT Probable nitronate monooxygenase OS=Staphylococcus aureus (strain USA300 / TCH1516) GN=USA300HOU_0879 PE=3 SV=1 | Back alignment and function desciption |
|---|
Score = 125 bits (314), Expect = 5e-28, Method: Compositional matrix adjust.
Identities = 103/332 (31%), Positives = 163/332 (49%), Gaps = 57/332 (17%)
Query: 6 MLGFEYGIVQAPLGPDISGPELVAAVANAGGLGLLRAPDWEAPDYLRDLIRKTRSLTERP 65
ML EY I+QA + + P+LVA+V+N+GGLG + A + L D I R LT
Sbjct: 10 MLSIEYPIIQAGMAGSTT-PKLVASVSNSGGLGTIGAGYFNT-QQLEDEIDYVRQLTSNS 67
Query: 66 FGVGVVLAFPHN------ENIKA------------------------------ILSEKVA 89
FGV V + + EN+ A I+ ++V
Sbjct: 68 FGVNVFVPSQQSYTSSQIENMNAWLKPYRRALHLEEPVVKITEEQQFKCHIDTIIKKQVP 127
Query: 90 VLQVSWGEYSEELVLEAHSAGVKVVPQVGSFDEARKAVNAGVDAIIVQGREAGGH----- 144
V ++G SE+++ +A VK++ S DEA AG+DAI+ QG EAGGH
Sbjct: 128 VCCFTFGIPSEQIISRLKAANVKLIGTATSVDEAIANEKAGMDAIVAQGSEAGGHRGSFL 187
Query: 145 ----VIGQDGLISLLPMVVDLIGDRDIPIIAAGGIVDARGYVAALSLGAQGICLGTRFVA 200
+ G ISL+P +VD++ IP+IAAGGI+D RG +A++ LGA+G+ +GT F+
Sbjct: 188 KPKNQLPMVGTISLVPQIVDVVS---IPVIAAGGIMDGRGVLASIVLGAEGVQMGTAFLT 244
Query: 201 SEESYAHPEYKRKLVEMDKTEY--TDVFGRARWPGAPHRVLQTPFFSNWK-NIPAH--EN 255
S++S A + ++ +T+ T F G +R ++ S ++ +IP + +N
Sbjct: 245 SQDSNASELLRDAIINSKETDTVITKAFSGKLARGINNRFIEE--MSQYEGDIPDYPIQN 302
Query: 256 EVNQPIIGRSTIHGIEKKIHRLAGTVPNVTTT 287
E+ I + G ++ IH +G P + TT
Sbjct: 303 ELTSSIRKAAANIGDKELIHMWSGQSPRLATT 334
|
Catalyzes the oxidation of alkyl nitronates to produce the corresponding carbonyl compounds and nitrites. Staphylococcus aureus (strain USA300 / TCH1516) (taxid: 451516) EC: 1EC: .EC: 1EC: 3EC: .EC: 1EC: 2EC: .EC: 1EC: 6 |
| >sp|A6QFD2|2NPD_STAAE Probable nitronate monooxygenase OS=Staphylococcus aureus (strain Newman) GN=NWMN_0792 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 125 bits (314), Expect = 5e-28, Method: Compositional matrix adjust.
Identities = 103/332 (31%), Positives = 163/332 (49%), Gaps = 57/332 (17%)
Query: 6 MLGFEYGIVQAPLGPDISGPELVAAVANAGGLGLLRAPDWEAPDYLRDLIRKTRSLTERP 65
ML EY I+QA + + P+LVA+V+N+GGLG + A + L D I R LT
Sbjct: 10 MLSIEYPIIQAGMAGSTT-PKLVASVSNSGGLGTIGAGYFNT-QQLEDEIDYVRQLTSNS 67
Query: 66 FGVGVVLAFPHN------ENIKA------------------------------ILSEKVA 89
FGV V + + EN+ A I+ ++V
Sbjct: 68 FGVNVFVPSQQSYTSSQIENMNAWLKPYRRALHLEEPVVKITEEQQFKCHIDTIIKKQVP 127
Query: 90 VLQVSWGEYSEELVLEAHSAGVKVVPQVGSFDEARKAVNAGVDAIIVQGREAGGH----- 144
V ++G SE+++ +A VK++ S DEA AG+DAI+ QG EAGGH
Sbjct: 128 VCCFTFGIPSEQIISRLKAANVKLIGTATSVDEAIANEKAGMDAIVAQGSEAGGHRGSFL 187
Query: 145 ----VIGQDGLISLLPMVVDLIGDRDIPIIAAGGIVDARGYVAALSLGAQGICLGTRFVA 200
+ G ISL+P +VD++ IP+IAAGGI+D RG +A++ LGA+G+ +GT F+
Sbjct: 188 KPKNQLPMVGTISLVPQIVDVVS---IPVIAAGGIMDGRGVLASIVLGAEGVQMGTAFLT 244
Query: 201 SEESYAHPEYKRKLVEMDKTEY--TDVFGRARWPGAPHRVLQTPFFSNWK-NIPAH--EN 255
S++S A + ++ +T+ T F G +R ++ S ++ +IP + +N
Sbjct: 245 SQDSNASELLRDAIINSKETDTVITKAFSGKLARGINNRFIEE--MSQYEGDIPDYPIQN 302
Query: 256 EVNQPIIGRSTIHGIEKKIHRLAGTVPNVTTT 287
E+ I + G ++ IH +G P + TT
Sbjct: 303 ELTSSIRKAAANIGDKELIHMWSGQSPRLATT 334
|
Catalyzes the oxidation of alkyl nitronates to produce the corresponding carbonyl compounds and nitrites. Staphylococcus aureus (strain Newman) (taxid: 426430) EC: 1 EC: . EC: 1 EC: 3 EC: . EC: 1 EC: 2 EC: . EC: 1 EC: 6 |
| >sp|Q5HHG4|2NPD_STAAC Probable nitronate monooxygenase OS=Staphylococcus aureus (strain COL) GN=SACOL0922 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 125 bits (314), Expect = 5e-28, Method: Compositional matrix adjust.
Identities = 103/332 (31%), Positives = 163/332 (49%), Gaps = 57/332 (17%)
Query: 6 MLGFEYGIVQAPLGPDISGPELVAAVANAGGLGLLRAPDWEAPDYLRDLIRKTRSLTERP 65
ML EY I+QA + + P+LVA+V+N+GGLG + A + L D I R LT
Sbjct: 10 MLSIEYPIIQAGMAGSTT-PKLVASVSNSGGLGTIGAGYFNT-QQLEDEIDYVRQLTSNS 67
Query: 66 FGVGVVLAFPHN------ENIKA------------------------------ILSEKVA 89
FGV V + + EN+ A I+ ++V
Sbjct: 68 FGVNVFVPSQQSYTSSQIENMNAWLKPYRRALHLEEPVVKITEEQQFKCHIDTIIKKQVP 127
Query: 90 VLQVSWGEYSEELVLEAHSAGVKVVPQVGSFDEARKAVNAGVDAIIVQGREAGGH----- 144
V ++G SE+++ +A VK++ S DEA AG+DAI+ QG EAGGH
Sbjct: 128 VCCFTFGIPSEQIISRLKAANVKLIGTATSVDEAIANEKAGMDAIVAQGSEAGGHRGSFL 187
Query: 145 ----VIGQDGLISLLPMVVDLIGDRDIPIIAAGGIVDARGYVAALSLGAQGICLGTRFVA 200
+ G ISL+P +VD++ IP+IAAGGI+D RG +A++ LGA+G+ +GT F+
Sbjct: 188 KPKNQLPMVGTISLVPQIVDVVS---IPVIAAGGIMDGRGVLASIVLGAEGVQMGTAFLT 244
Query: 201 SEESYAHPEYKRKLVEMDKTEY--TDVFGRARWPGAPHRVLQTPFFSNWK-NIPAH--EN 255
S++S A + ++ +T+ T F G +R ++ S ++ +IP + +N
Sbjct: 245 SQDSNASELLRDAIINSKETDTVITKAFSGKLARGINNRFIEE--MSQYEGDIPDYPIQN 302
Query: 256 EVNQPIIGRSTIHGIEKKIHRLAGTVPNVTTT 287
E+ I + G ++ IH +G P + TT
Sbjct: 303 ELTSSIRKAAANIGDKELIHMWSGQSPRLATT 334
|
Catalyzes the oxidation of alkyl nitronates to produce the corresponding carbonyl compounds and nitrites. Staphylococcus aureus (strain COL) (taxid: 93062) EC: 1 EC: . EC: 1 EC: 3 EC: . EC: 1 EC: 2 EC: . EC: 1 EC: 6 |
| >sp|Q2FZX9|2NPD_STAA8 Probable nitronate monooxygenase OS=Staphylococcus aureus (strain NCTC 8325) GN=SAOUHSC_00855 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 125 bits (314), Expect = 5e-28, Method: Compositional matrix adjust.
Identities = 103/332 (31%), Positives = 163/332 (49%), Gaps = 57/332 (17%)
Query: 6 MLGFEYGIVQAPLGPDISGPELVAAVANAGGLGLLRAPDWEAPDYLRDLIRKTRSLTERP 65
ML EY I+QA + + P+LVA+V+N+GGLG + A + L D I R LT
Sbjct: 10 MLSIEYPIIQAGMAGSTT-PKLVASVSNSGGLGTIGAGYFNT-QQLEDEIDYVRQLTSNS 67
Query: 66 FGVGVVLAFPHN------ENIKA------------------------------ILSEKVA 89
FGV V + + EN+ A I+ ++V
Sbjct: 68 FGVNVFVPSQQSYTSSQIENMNAWLKPYRRALHLEEPVVKITEEQQFKCHIDTIIKKQVP 127
Query: 90 VLQVSWGEYSEELVLEAHSAGVKVVPQVGSFDEARKAVNAGVDAIIVQGREAGGH----- 144
V ++G SE+++ +A VK++ S DEA AG+DAI+ QG EAGGH
Sbjct: 128 VCCFTFGIPSEQIISRLKAANVKLIGTATSVDEAIANEKAGMDAIVAQGSEAGGHRGSFL 187
Query: 145 ----VIGQDGLISLLPMVVDLIGDRDIPIIAAGGIVDARGYVAALSLGAQGICLGTRFVA 200
+ G ISL+P +VD++ IP+IAAGGI+D RG +A++ LGA+G+ +GT F+
Sbjct: 188 KPKNQLPMVGTISLVPQIVDVVS---IPVIAAGGIMDGRGVLASIVLGAEGVQMGTAFLT 244
Query: 201 SEESYAHPEYKRKLVEMDKTEY--TDVFGRARWPGAPHRVLQTPFFSNWK-NIPAH--EN 255
S++S A + ++ +T+ T F G +R ++ S ++ +IP + +N
Sbjct: 245 SQDSNASELLRDAIINSKETDTVITKAFSGKLARGINNRFIEE--MSQYEGDIPDYPIQN 302
Query: 256 EVNQPIIGRSTIHGIEKKIHRLAGTVPNVTTT 287
E+ I + G ++ IH +G P + TT
Sbjct: 303 ELTSSIRKAAANIGDKELIHMWSGQSPRLATT 334
|
Catalyzes the oxidation of alkyl nitronates to produce the corresponding carbonyl compounds and nitrites. Staphylococcus aureus (strain NCTC 8325) (taxid: 93061) EC: 1 EC: . EC: 1 EC: 3 EC: . EC: 1 EC: 2 EC: . EC: 1 EC: 6 |
| >sp|Q2FIF3|2NPD_STAA3 Probable nitronate monooxygenase OS=Staphylococcus aureus (strain USA300) GN=SAUSA300_0825 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 125 bits (314), Expect = 5e-28, Method: Compositional matrix adjust.
Identities = 103/332 (31%), Positives = 163/332 (49%), Gaps = 57/332 (17%)
Query: 6 MLGFEYGIVQAPLGPDISGPELVAAVANAGGLGLLRAPDWEAPDYLRDLIRKTRSLTERP 65
ML EY I+QA + + P+LVA+V+N+GGLG + A + L D I R LT
Sbjct: 10 MLSIEYPIIQAGMAGSTT-PKLVASVSNSGGLGTIGAGYFNT-QQLEDEIDYVRQLTSNS 67
Query: 66 FGVGVVLAFPHN------ENIKA------------------------------ILSEKVA 89
FGV V + + EN+ A I+ ++V
Sbjct: 68 FGVNVFVPSQQSYTSSQIENMNAWLKPYRRALHLEEPVVKITEEQQFKCHIDTIIKKQVP 127
Query: 90 VLQVSWGEYSEELVLEAHSAGVKVVPQVGSFDEARKAVNAGVDAIIVQGREAGGH----- 144
V ++G SE+++ +A VK++ S DEA AG+DAI+ QG EAGGH
Sbjct: 128 VCCFTFGIPSEQIISRLKAANVKLIGTATSVDEAIANEKAGMDAIVAQGSEAGGHRGSFL 187
Query: 145 ----VIGQDGLISLLPMVVDLIGDRDIPIIAAGGIVDARGYVAALSLGAQGICLGTRFVA 200
+ G ISL+P +VD++ IP+IAAGGI+D RG +A++ LGA+G+ +GT F+
Sbjct: 188 KPKNQLPMVGTISLVPQIVDVVS---IPVIAAGGIMDGRGVLASIVLGAEGVQMGTAFLT 244
Query: 201 SEESYAHPEYKRKLVEMDKTEY--TDVFGRARWPGAPHRVLQTPFFSNWK-NIPAH--EN 255
S++S A + ++ +T+ T F G +R ++ S ++ +IP + +N
Sbjct: 245 SQDSNASELLRDAIINSKETDTVITKAFSGKLARGINNRFIEE--MSQYEGDIPDYPIQN 302
Query: 256 EVNQPIIGRSTIHGIEKKIHRLAGTVPNVTTT 287
E+ I + G ++ IH +G P + TT
Sbjct: 303 ELTSSIRKAAANIGDKELIHMWSGQSPRLATT 334
|
Catalyzes the oxidation of alkyl nitronates to produce the corresponding carbonyl compounds and nitrites. Staphylococcus aureus (strain USA300) (taxid: 367830) EC: 1 EC: . EC: 1 EC: 3 EC: . EC: 1 EC: 2 EC: . EC: 1 EC: 6 |
| >sp|Q6GB05|2NPD_STAAS Probable nitronate monooxygenase OS=Staphylococcus aureus (strain MSSA476) GN=SAS0791 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 122 bits (307), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 102/339 (30%), Positives = 164/339 (48%), Gaps = 57/339 (16%)
Query: 6 MLGFEYGIVQAPLGPDISGPELVAAVANAGGLGLLRAPDWEAPDYLRDLIRKTRSLTERP 65
ML EY I+QA + + P+LVA+V+N+GGLG + A + L D I R LT
Sbjct: 10 MLSIEYPIIQAGMAGSTT-PKLVASVSNSGGLGTIGAGYFNT-QQLEDEIDYVRQLTSNS 67
Query: 66 FGVGVVLAFPHN------ENIKA------------------------------ILSEKVA 89
FGV V + + EN+ A I+ ++V
Sbjct: 68 FGVNVFVPSQQSYTSSQIENMNAWLKPYRRALHLEEPVVKITEEQQFKCHIDTIIKKQVP 127
Query: 90 VLQVSWGEYSEELVLEAHSAGVKVVPQVGSFDEARKAVNAGVDAIIVQGREAGGH----- 144
V ++G SE ++ A +K++ S DEA AG+DAI+ QG EAGGH
Sbjct: 128 VCCFTFGIPSESIIKRLKEANIKLIGTATSVDEAIANEKAGMDAIVAQGSEAGGHRGSFL 187
Query: 145 ----VIGQDGLISLLPMVVDLIGDRDIPIIAAGGIVDARGYVAALSLGAQGICLGTRFVA 200
+ G ISL+P +VD++ IP+IAAGGI+D RG +A++ LGA+G+ +GT F+
Sbjct: 188 KPKNQLPMVGTISLVPQIVDVVS---IPVIAAGGIMDGRGVLASIVLGAEGVQMGTAFLT 244
Query: 201 SEESYAHPEYKRKLVEMDKTEY--TDVFGRARWPGAPHRVLQTPFFSNWK-NIPAH--EN 255
S++S A + ++ +T+ T F G +R ++ S ++ +IP + +N
Sbjct: 245 SQDSNASELLRDAIINSKETDTVVTKAFSGKLARGINNRFIEE--MSQYEGDIPDYPIQN 302
Query: 256 EVNQPIIGRSTIHGIEKKIHRLAGTVPNVTTTGDIDSMV 294
E+ I + G ++ H +G P + TT +++V
Sbjct: 303 ELTSSIRKAAANIGDKELTHMWSGQSPRLATTHPANTIV 341
|
Catalyzes the oxidation of alkyl nitronates to produce the corresponding carbonyl compounds and nitrites. Staphylococcus aureus (strain MSSA476) (taxid: 282459) EC: 1 EC: . EC: 1 EC: 3 EC: . EC: 1 EC: 2 EC: . EC: 1 EC: 6 |
| >sp|O05413|2NPD_BACSU Probable nitronate monooxygenase OS=Bacillus subtilis (strain 168) GN=yrpB PE=3 SV=1 | Back alignment and function description |
|---|
Score = 122 bits (306), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 95/352 (26%), Positives = 166/352 (47%), Gaps = 68/352 (19%)
Query: 13 IVQAPLGPDISGPELVAAVANAGGLGLLRAPDWEAPDYLRDLIRKTRSLTERPFGVGVV- 71
I+QAP+ I+ P L +AV+N G LG L A + PD L I++ LT+ PF + V
Sbjct: 14 IIQAPMAGGITKPRLASAVSNQGALGSL-ASGYLTPDLLEQQIKEIFELTDAPFQINVFV 72
Query: 72 ---LAFPHNENIKA------------------------------ILSEKVAVLQVSWGEY 98
L P + IK IL KV ++
Sbjct: 73 PLGLEMPPKDQIKKWKENIPLANQVNQFTSVQEEWDDFYQKIDLILKYKVKACSFTFDLP 132
Query: 99 SEELVLEAHSAGVKVVPQVGSFDEARKAVNAGVDAIIVQGREAGGH------VIGQD--G 150
E+ V E +AG ++ + +EA G+D +++QG EAGGH G+ G
Sbjct: 133 PEDAVKELKTAGCCLIGTASTVEEALLMEERGMDIVVLQGSEAGGHRGAFLPSKGESAVG 192
Query: 151 LISLLPMVVDLIGDRDIPIIAAGGIVDARGYVAALSLGAQGICLGTRFVASEESYAHPEY 210
L++L+P D + +P+IAAGG++D RG AAL+LGAQG+ +G+ F+ ES AHP +
Sbjct: 193 LMALIPQAADALS---VPVIAAGGMIDHRGVKAALTLGAQGVQIGSAFLICHESNAHPVH 249
Query: 211 KRKLVEMDK--TEYTDVFGRARWPGAPHRVLQTPFFSNWKNIP-AHENEVNQPIIGRSTI 267
K+K++E ++ T+ T +F G ++ ++ + +P ++N + + + ++++
Sbjct: 250 KQKILEANEADTKLTTLFSGKEARGIVNKWMEENEQFETQTLPYPYQNTLTKAMRQKASL 309
Query: 268 HGIEKKIHRLAGTVPNVTTTGDIDSMVMFAGEGVGLIREILPAGEVVKQLVE 319
+ D M ++AG+G+ + E + +++ QL +
Sbjct: 310 Q-------------------NNHDQMSLWAGQGIRSLTEEISVKQLLNQLCQ 342
|
Catalyzes the oxidation of alkyl nitronates to produce the corresponding carbonyl compounds and nitrites. Bacillus subtilis (strain 168) (taxid: 224308) EC: 1 EC: . EC: 1 EC: 3 EC: . EC: 1 EC: 2 EC: . EC: 1 EC: 6 |
| >sp|Q6GIG7|2NPD_STAAR Probable nitronate monooxygenase OS=Staphylococcus aureus (strain MRSA252) GN=SAR0883 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 120 bits (302), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 100/332 (30%), Positives = 160/332 (48%), Gaps = 57/332 (17%)
Query: 6 MLGFEYGIVQAPLGPDISGPELVAAVANAGGLGLLRAPDWEAPDYLRDLIRKTRSLTERP 65
ML EY I+QA + + P+LVA+V+N+GGLG + A + L D I R LT
Sbjct: 10 MLSIEYPIIQAGMAGSTT-PKLVASVSNSGGLGTIGAGYFNT-QQLEDEIDYVRQLTSNS 67
Query: 66 FGVGVVLAFPHN------ENIKA------------------------------ILSEKVA 89
FGV V + + EN+ A I+ ++V
Sbjct: 68 FGVNVFVPSQQSYTSSQIENMNAWLKPYRRALHLEEPVVKITEEQQFKCHIDTIIKKQVP 127
Query: 90 VLQVSWGEYSEELVLEAHSAGVKVVPQVGSFDEARKAVNAGVDAIIVQGREAGGH----- 144
V ++G +E ++ A +K++ S DEA AG+DAI+ QG EAGGH
Sbjct: 128 VCCFTFGIPNESIIKRLKEANIKLIGTATSVDEAIANEKAGMDAIVAQGSEAGGHRGSFL 187
Query: 145 ----VIGQDGLISLLPMVVDLIGDRDIPIIAAGGIVDARGYVAALSLGAQGICLGTRFVA 200
+ G ISL+P +VD++ IP+IAAGGI+D RG +A++ LGA+G+ +GT F+
Sbjct: 188 KPKNQLPMVGTISLVPQIVDVVS---IPVIAAGGIMDGRGVLASIVLGAEGVQMGTAFLT 244
Query: 201 SEESYAHPEYKRKLVEMDKTEY--TDVFGRARWPGAPHRVLQTPFFSNWK-NIPAH--EN 255
S++S A + ++ +T+ T F G +R ++ S ++ +IP + +N
Sbjct: 245 SQDSNASELLRDAIINSKETDTVVTKAFSGKLARGINNRFIEE--MSQYEGDIPDYPIQN 302
Query: 256 EVNQPIIGRSTIHGIEKKIHRLAGTVPNVTTT 287
E+ I + G ++ H +G P + TT
Sbjct: 303 ELTSSIRKAAANIGDKELTHMWSGQSPRLATT 334
|
Catalyzes the oxidation of alkyl nitronates to produce the corresponding carbonyl compounds and nitrites. Staphylococcus aureus (strain MRSA252) (taxid: 282458) EC: 1 EC: . EC: 1 EC: 3 EC: . EC: 1 EC: 2 EC: . EC: 1 EC: 6 |
| >sp|Q99VF6|2NPD_STAAN Probable nitronate monooxygenase OS=Staphylococcus aureus (strain N315) GN=SA0781 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 120 bits (300), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 100/332 (30%), Positives = 160/332 (48%), Gaps = 57/332 (17%)
Query: 6 MLGFEYGIVQAPLGPDISGPELVAAVANAGGLGLLRAPDWEAPDYLRDLIRKTRSLTERP 65
ML EY I+QA + + P+LVA+V+N+GGLG + A + L D I R LT
Sbjct: 10 MLSIEYPIIQAGMAGSTT-PKLVASVSNSGGLGTIGAGYFNT-QQLEDEIDYVRQLTSNS 67
Query: 66 FGVGVVLAFPHN------ENIKA------------------------------ILSEKVA 89
FGV V + + EN+ A I+ ++V
Sbjct: 68 FGVNVFVPSQQSYTSSQIENMNAWLKPYRRALHLEEPVVKIIEEQQFKCHIDTIIKKQVP 127
Query: 90 VLQVSWGEYSEELVLEAHSAGVKVVPQVGSFDEARKAVNAGVDAIIVQGREAGGH----- 144
V ++G +E ++ A +K++ S DEA AG+DAI+ QG EAGGH
Sbjct: 128 VCCFTFGIPNESIIERLKEANIKLIGTATSVDEAIANEKAGMDAIVAQGSEAGGHRGSFL 187
Query: 145 ----VIGQDGLISLLPMVVDLIGDRDIPIIAAGGIVDARGYVAALSLGAQGICLGTRFVA 200
+ G ISL+P +VD++ IP+IAAGGI+D RG +A++ LGA+G+ +GT F+
Sbjct: 188 KPKNQLPMVGTISLVPQIVDVVS---IPVIAAGGIMDGRGVLASIVLGAEGVQMGTAFLT 244
Query: 201 SEESYAHPEYKRKLVEMDKTEY--TDVFGRARWPGAPHRVLQTPFFSNWK-NIPAH--EN 255
S++S A + ++ +T+ T F G +R ++ S ++ +IP + +N
Sbjct: 245 SQDSNASELLRDAIINSKETDTVVTKAFSGKLARGINNRFIEE--MSQYEGDIPDYPIQN 302
Query: 256 EVNQPIIGRSTIHGIEKKIHRLAGTVPNVTTT 287
E+ I + G ++ H +G P + TT
Sbjct: 303 ELTSSIRKAAANIGDKELTHMWSGQSPRLATT 334
|
Catalyzes the oxidation of alkyl nitronates to produce the corresponding carbonyl compounds and nitrites. Staphylococcus aureus (strain N315) (taxid: 158879) EC: 1 EC: . EC: 1 EC: 3 EC: . EC: 1 EC: 2 EC: . EC: 1 EC: 6 |
| >sp|A5IR97|2NPD_STAA9 Probable nitronate monooxygenase OS=Staphylococcus aureus (strain JH9) GN=SaurJH9_0919 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 120 bits (300), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 100/332 (30%), Positives = 160/332 (48%), Gaps = 57/332 (17%)
Query: 6 MLGFEYGIVQAPLGPDISGPELVAAVANAGGLGLLRAPDWEAPDYLRDLIRKTRSLTERP 65
ML EY I+QA + + P+LVA+V+N+GGLG + A + L D I R LT
Sbjct: 10 MLSIEYPIIQAGMAGSTT-PKLVASVSNSGGLGTIGAGYFNT-QQLEDEIDYVRQLTSNS 67
Query: 66 FGVGVVLAFPHN------ENIKA------------------------------ILSEKVA 89
FGV V + + EN+ A I+ ++V
Sbjct: 68 FGVNVFVPSQQSYTSSQIENMNAWLKPYRRALHLEEPVVKIIEEQQFKCHIDTIIKKQVP 127
Query: 90 VLQVSWGEYSEELVLEAHSAGVKVVPQVGSFDEARKAVNAGVDAIIVQGREAGGH----- 144
V ++G +E ++ A +K++ S DEA AG+DAI+ QG EAGGH
Sbjct: 128 VCCFTFGIPNESIIERLKEANIKLIGTATSVDEAIANEKAGMDAIVAQGSEAGGHRGSFL 187
Query: 145 ----VIGQDGLISLLPMVVDLIGDRDIPIIAAGGIVDARGYVAALSLGAQGICLGTRFVA 200
+ G ISL+P +VD++ IP+IAAGGI+D RG +A++ LGA+G+ +GT F+
Sbjct: 188 KPKNQLPMVGTISLVPQIVDVVS---IPVIAAGGIMDGRGVLASIVLGAEGVQMGTAFLT 244
Query: 201 SEESYAHPEYKRKLVEMDKTEY--TDVFGRARWPGAPHRVLQTPFFSNWK-NIPAH--EN 255
S++S A + ++ +T+ T F G +R ++ S ++ +IP + +N
Sbjct: 245 SQDSNASELLRDAIINSKETDTVVTKAFSGKLARGINNRFIEE--MSQYEGDIPDYPIQN 302
Query: 256 EVNQPIIGRSTIHGIEKKIHRLAGTVPNVTTT 287
E+ I + G ++ H +G P + TT
Sbjct: 303 ELTSSIRKAAANIGDKELTHMWSGQSPRLATT 334
|
Catalyzes the oxidation of alkyl nitronates to produce the corresponding carbonyl compounds and nitrites. Staphylococcus aureus (strain JH9) (taxid: 359786) EC: 1 EC: . EC: 1 EC: 3 EC: . EC: 1 EC: 2 EC: . EC: 1 EC: 6 |
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 332 | ||||||
| 225462874 | 339 | PREDICTED: probable nitronate monooxygen | 1.0 | 0.979 | 0.804 | 1e-158 | |
| 224140777 | 332 | predicted protein [Populus trichocarpa] | 1.0 | 1.0 | 0.792 | 1e-155 | |
| 30697982 | 333 | Aldolase-type TIM barrel family protein | 0.984 | 0.981 | 0.788 | 1e-152 | |
| 255569764 | 332 | 2-nitropropane dioxygenase precursor, pu | 0.993 | 0.993 | 0.784 | 1e-152 | |
| 357460979 | 330 | 2-nitropropane dioxygenase-like protein | 0.993 | 1.0 | 0.751 | 1e-151 | |
| 297797437 | 332 | 2-nitropropane dioxygenase family [Arabi | 0.984 | 0.984 | 0.782 | 1e-150 | |
| 297797441 | 332 | 2-nitropropane dioxygenase family [Arabi | 0.984 | 0.984 | 0.779 | 1e-149 | |
| 449438207 | 336 | PREDICTED: probable nitronate monooxygen | 1.0 | 0.988 | 0.740 | 1e-146 | |
| 356525868 | 330 | PREDICTED: probable nitronate monooxygen | 0.993 | 1.0 | 0.745 | 1e-146 | |
| 211906458 | 334 | 2-nitropropane dioxygenase [Gossypium hi | 0.993 | 0.988 | 0.721 | 1e-133 |
| >gi|225462874|ref|XP_002272947.1| PREDICTED: probable nitronate monooxygenase [Vitis vinifera] gi|296087479|emb|CBI34068.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 563 bits (1450), Expect = e-158, Method: Compositional matrix adjust.
Identities = 267/332 (80%), Positives = 308/332 (92%)
Query: 1 MGWRGMLGFEYGIVQAPLGPDISGPELVAAVANAGGLGLLRAPDWEAPDYLRDLIRKTRS 60
MGW+G+LGFEYG+VQAPLGPDISGPELVAAVANAG +G LRAPDWE PDYLR LI+KTR+
Sbjct: 1 MGWKGVLGFEYGVVQAPLGPDISGPELVAAVANAGAIGFLRAPDWETPDYLRGLIKKTRT 60
Query: 61 LTERPFGVGVVLAFPHNENIKAILSEKVAVLQVSWGEYSEELVLEAHSAGVKVVPQVGSF 120
LT++PFGV V+LAFPH EN+KAIL+EKVAVLQVSWG+ EELV EAH AGVKVVPQVGSF
Sbjct: 61 LTDKPFGVAVILAFPHEENMKAILAEKVAVLQVSWGDVREELVHEAHCAGVKVVPQVGSF 120
Query: 121 DEARKAVNAGVDAIIVQGREAGGHVIGQDGLISLLPMVVDLIGDRDIPIIAAGGIVDARG 180
+EARKA++ GVDAIIVQGREAGGHVIGQDGLISLLP VVDL+GDRDIP+IAAGGIVD RG
Sbjct: 121 EEARKAIDVGVDAIIVQGREAGGHVIGQDGLISLLPRVVDLVGDRDIPVIAAGGIVDERG 180
Query: 181 YVAALSLGAQGICLGTRFVASEESYAHPEYKRKLVEMDKTEYTDVFGRARWPGAPHRVLQ 240
YVAAL+LGAQGICLGTRFVA+EES+AHP YKRKL+E+D+TEYT+VFGRARWPGAP RVL+
Sbjct: 181 YVAALALGAQGICLGTRFVATEESHAHPIYKRKLLELDETEYTNVFGRARWPGAPQRVLE 240
Query: 241 TPFFSNWKNIPAHENEVNQPIIGRSTIHGIEKKIHRLAGTVPNVTTTGDIDSMVMFAGEG 300
TPFF +WK++PAHE+E+NQP+IG STI+G+EK I R +GTVPN TTTGDI+SMV++AGEG
Sbjct: 241 TPFFKDWKSLPAHESEINQPLIGHSTINGMEKDIRRFSGTVPNRTTTGDIESMVLYAGEG 300
Query: 301 VGLIREILPAGEVVKQLVEGAQLLVHTKFSGL 332
VGLI+EILPA EVVK+LVEGAQLL+H +F GL
Sbjct: 301 VGLIKEILPAAEVVKRLVEGAQLLIHQQFGGL 332
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224140777|ref|XP_002323755.1| predicted protein [Populus trichocarpa] gi|222866757|gb|EEF03888.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 552 bits (1422), Expect = e-155, Method: Compositional matrix adjust.
Identities = 263/332 (79%), Positives = 306/332 (92%)
Query: 1 MGWRGMLGFEYGIVQAPLGPDISGPELVAAVANAGGLGLLRAPDWEAPDYLRDLIRKTRS 60
MGWRG+LGFEYGIVQAPLGPDISGPELVAAVANAGGLGLLRAPDWE+PDYLR+LIRKTRS
Sbjct: 1 MGWRGILGFEYGIVQAPLGPDISGPELVAAVANAGGLGLLRAPDWESPDYLRELIRKTRS 60
Query: 61 LTERPFGVGVVLAFPHNENIKAILSEKVAVLQVSWGEYSEELVLEAHSAGVKVVPQVGSF 120
LT++PFGVG+VLAFPH EN+K IL EKVAVLQV WGE S+ELVLEAH AGVKVVPQVGSF
Sbjct: 61 LTDKPFGVGLVLAFPHEENLKVILDEKVAVLQVYWGECSKELVLEAHLAGVKVVPQVGSF 120
Query: 121 DEARKAVNAGVDAIIVQGREAGGHVIGQDGLISLLPMVVDLIGDRDIPIIAAGGIVDARG 180
++ARKA++AGVD IIVQGREAGGHVIGQ+GLIS+LP VVDL+GDRDIP+IAAGGIV+ARG
Sbjct: 121 EDARKAIDAGVDGIIVQGREAGGHVIGQEGLISILPRVVDLVGDRDIPVIAAGGIVNARG 180
Query: 181 YVAALSLGAQGICLGTRFVASEESYAHPEYKRKLVEMDKTEYTDVFGRARWPGAPHRVLQ 240
YVAAL+LGA+G+CLGTRFVA+EES AHP YKRKLVE+D+TEYT++FGRARWP AP R L
Sbjct: 181 YVAALALGAKGVCLGTRFVATEESNAHPTYKRKLVELDRTEYTNIFGRARWPNAPQRALV 240
Query: 241 TPFFSNWKNIPAHENEVNQPIIGRSTIHGIEKKIHRLAGTVPNVTTTGDIDSMVMFAGEG 300
TPFF++WK++P HENE+NQP+IGRSTI+G EK+I R G VPN+TTTGDI+SM M+AG+G
Sbjct: 241 TPFFNDWKSLPPHENEINQPVIGRSTINGEEKEIRRFGGPVPNMTTTGDIESMAMYAGQG 300
Query: 301 VGLIREILPAGEVVKQLVEGAQLLVHTKFSGL 332
VGLI+EI PA EV+K+LVEGAQ L+ +F+GL
Sbjct: 301 VGLIKEIWPASEVIKRLVEGAQQLIRGEFAGL 332
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|30697982|ref|NP_568988.2| Aldolase-type TIM barrel family protein [Arabidopsis thaliana] gi|13878127|gb|AAK44141.1|AF370326_1 putative 2-nitropropane dioxygenase [Arabidopsis thaliana] gi|9759401|dbj|BAB09856.1| 2-nitropropane dioxygenase-like protein [Arabidopsis thaliana] gi|17104799|gb|AAL34288.1| putative 2-nitropropane dioxygenase [Arabidopsis thaliana] gi|332010479|gb|AED97862.1| Aldolase-type TIM barrel family protein [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
Score = 543 bits (1398), Expect = e-152, Method: Compositional matrix adjust.
Identities = 258/327 (78%), Positives = 298/327 (91%)
Query: 4 RGMLGFEYGIVQAPLGPDISGPELVAAVANAGGLGLLRAPDWEAPDYLRDLIRKTRSLTE 63
+G+LGFEYGIVQAPLGPDISGPELVAAVANAGG+GLLR PDWE PDYLR+LIRKT++LTE
Sbjct: 2 KGILGFEYGIVQAPLGPDISGPELVAAVANAGGIGLLRCPDWECPDYLRELIRKTKTLTE 61
Query: 64 RPFGVGVVLAFPHNENIKAILSEKVAVLQVSWGEYSEELVLEAHSAGVKVVPQVGSFDEA 123
+PFG+GVVLAFPH+ NIK IL EKVAVLQ+ WG+ S+ELV +AH AGVKV+PQVG+ +EA
Sbjct: 62 KPFGIGVVLAFPHDLNIKTILEEKVAVLQLYWGDCSQELVDDAHFAGVKVIPQVGNVEEA 121
Query: 124 RKAVNAGVDAIIVQGREAGGHVIGQDGLISLLPMVVDLIGDRDIPIIAAGGIVDARGYVA 183
RKAV GVDAIIVQGREAGGHVIG+DGL SLLP VVDL+G+RDIP+IAAGGIVD RGYVA
Sbjct: 122 RKAVAVGVDAIIVQGREAGGHVIGKDGLFSLLPRVVDLVGERDIPVIAAGGIVDGRGYVA 181
Query: 184 ALSLGAQGICLGTRFVASEESYAHPEYKRKLVEMDKTEYTDVFGRARWPGAPHRVLQTPF 243
ALSLGAQG+CLGTRFVA+ ESYAHP YKRKL+E +KTEYTDVFGRARWPGAP RVL+TPF
Sbjct: 182 ALSLGAQGVCLGTRFVATHESYAHPIYKRKLIEYEKTEYTDVFGRARWPGAPQRVLETPF 241
Query: 244 FSNWKNIPAHENEVNQPIIGRSTIHGIEKKIHRLAGTVPNVTTTGDIDSMVMFAGEGVGL 303
F +W+++PAHENEVNQPIIGRSTIHG+EK+I R +GTVPN+TTTGD++SM M+AG+ VGL
Sbjct: 242 FDDWRSLPAHENEVNQPIIGRSTIHGVEKEIRRFSGTVPNMTTTGDLESMAMYAGQSVGL 301
Query: 304 IREILPAGEVVKQLVEGAQLLVHTKFS 330
I+EILPAGEVVK LVE AQ L+ KF+
Sbjct: 302 IKEILPAGEVVKSLVEEAQALILQKFN 328
|
Source: Arabidopsis thaliana Species: Arabidopsis thaliana Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|255569764|ref|XP_002525846.1| 2-nitropropane dioxygenase precursor, putative [Ricinus communis] gi|223534851|gb|EEF36540.1| 2-nitropropane dioxygenase precursor, putative [Ricinus communis] | Back alignment and taxonomy information |
|---|
Score = 542 bits (1397), Expect = e-152, Method: Compositional matrix adjust.
Identities = 259/330 (78%), Positives = 298/330 (90%)
Query: 1 MGWRGMLGFEYGIVQAPLGPDISGPELVAAVANAGGLGLLRAPDWEAPDYLRDLIRKTRS 60
MGW+G+LG EYGIVQAPLGPDISGPELVAAVANAGGLG LRAPDWE+PDYLR LIRKTR+
Sbjct: 1 MGWKGILGIEYGIVQAPLGPDISGPELVAAVANAGGLGFLRAPDWESPDYLRGLIRKTRT 60
Query: 61 LTERPFGVGVVLAFPHNENIKAILSEKVAVLQVSWGEYSEELVLEAHSAGVKVVPQVGSF 120
LT++PFGVGV+LAFPH EN+KAIL EKVA LQV WG+ SEELVL+AH GVKVVPQVGS+
Sbjct: 61 LTDKPFGVGVILAFPHEENVKAILDEKVAFLQVYWGDCSEELVLQAHQVGVKVVPQVGSY 120
Query: 121 DEARKAVNAGVDAIIVQGREAGGHVIGQDGLISLLPMVVDLIGDRDIPIIAAGGIVDARG 180
++A+KA+N GVDAII+QGREAGGHVIGQ+GLISLLP VVDL+GDR IP+IAAGGIVDARG
Sbjct: 121 EDAKKAINVGVDAIILQGREAGGHVIGQEGLISLLPRVVDLVGDRGIPVIAAGGIVDARG 180
Query: 181 YVAALSLGAQGICLGTRFVASEESYAHPEYKRKLVEMDKTEYTDVFGRARWPGAPHRVLQ 240
YVAAL+LGA+G+CLGTRFVA+EESYAHP YKRKLVE++KTEYT+VFGRARWP AP R L
Sbjct: 181 YVAALALGAKGVCLGTRFVATEESYAHPTYKRKLVELNKTEYTNVFGRARWPNAPQRALV 240
Query: 241 TPFFSNWKNIPAHENEVNQPIIGRSTIHGIEKKIHRLAGTVPNVTTTGDIDSMVMFAGEG 300
TPFF++WK +P HE+EVNQPIIGRSTI+G EK+I R G VPN+T TGDI+SM M+AG+G
Sbjct: 241 TPFFNDWKALPPHESEVNQPIIGRSTINGEEKEIRRFGGPVPNMTATGDIESMAMYAGQG 300
Query: 301 VGLIREILPAGEVVKQLVEGAQLLVHTKFS 330
VGLI EILPA EVVK+LVEGAQ L+ +FS
Sbjct: 301 VGLINEILPACEVVKRLVEGAQRLIQQEFS 330
|
Source: Ricinus communis Species: Ricinus communis Genus: Ricinus Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|357460979|ref|XP_003600771.1| 2-nitropropane dioxygenase-like protein [Medicago truncatula] gi|355489819|gb|AES71022.1| 2-nitropropane dioxygenase-like protein [Medicago truncatula] | Back alignment and taxonomy information |
|---|
Score = 539 bits (1388), Expect = e-151, Method: Compositional matrix adjust.
Identities = 248/330 (75%), Positives = 299/330 (90%)
Query: 1 MGWRGMLGFEYGIVQAPLGPDISGPELVAAVANAGGLGLLRAPDWEAPDYLRDLIRKTRS 60
MGWRG+LGFEYGI+QAPLGPDISGP+LVAAVANAG LGLLRAPDWE+PDYLR+LI++TR+
Sbjct: 1 MGWRGLLGFEYGIIQAPLGPDISGPQLVAAVANAGALGLLRAPDWESPDYLRELIKQTRT 60
Query: 61 LTERPFGVGVVLAFPHNENIKAILSEKVAVLQVSWGEYSEELVLEAHSAGVKVVPQVGSF 120
LT++PFG+G+VLAFPH EN+K IL EKVAVLQ WG+ + ELV +AHSAGVK+VPQVGSF
Sbjct: 61 LTDKPFGIGLVLAFPHEENLKVILDEKVAVLQTYWGDCTTELVAKAHSAGVKIVPQVGSF 120
Query: 121 DEARKAVNAGVDAIIVQGREAGGHVIGQDGLISLLPMVVDLIGDRDIPIIAAGGIVDARG 180
+ A++A++AG D II+QGREAGGHVIGQD LISL+P VVDL+GDRDIP+IAAGGIVD RG
Sbjct: 121 ESAKQAIDAGADGIILQGREAGGHVIGQDNLISLVPRVVDLVGDRDIPVIAAGGIVDGRG 180
Query: 181 YVAALSLGAQGICLGTRFVASEESYAHPEYKRKLVEMDKTEYTDVFGRARWPGAPHRVLQ 240
YVAAL+LGAQG+CLGTRF+A+EES AHP YKRKLVE+++TEYTDVFGRARWP APHRVLQ
Sbjct: 181 YVAALALGAQGVCLGTRFLATEESNAHPIYKRKLVELNETEYTDVFGRARWPDAPHRVLQ 240
Query: 241 TPFFSNWKNIPAHENEVNQPIIGRSTIHGIEKKIHRLAGTVPNVTTTGDIDSMVMFAGEG 300
TPFF +W+++PAHE+E NQP+IG STIHG+EK+I R AGTVPN+TTTGD++SM M+AG+
Sbjct: 241 TPFFKDWRSLPAHESEANQPVIGHSTIHGVEKEIRRFAGTVPNMTTTGDLESMCMYAGQS 300
Query: 301 VGLIREILPAGEVVKQLVEGAQLLVHTKFS 330
VGLI+EIL AGEV+K+LVEGAQ ++ F
Sbjct: 301 VGLIKEILTAGEVIKRLVEGAQHIIQQNFK 330
|
Source: Medicago truncatula Species: Medicago truncatula Genus: Medicago Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|297797437|ref|XP_002866603.1| 2-nitropropane dioxygenase family [Arabidopsis lyrata subsp. lyrata] gi|297312438|gb|EFH42862.1| 2-nitropropane dioxygenase family [Arabidopsis lyrata subsp. lyrata] | Back alignment and taxonomy information |
|---|
Score = 536 bits (1381), Expect = e-150, Method: Compositional matrix adjust.
Identities = 256/327 (78%), Positives = 298/327 (91%)
Query: 4 RGMLGFEYGIVQAPLGPDISGPELVAAVANAGGLGLLRAPDWEAPDYLRDLIRKTRSLTE 63
+G+LGFE+GIVQAPLGPDISGPELVAAVANAGG+GLLR PDWE PDYLR+LIRKT++LT+
Sbjct: 2 KGILGFEHGIVQAPLGPDISGPELVAAVANAGGIGLLRCPDWECPDYLRELIRKTKTLTD 61
Query: 64 RPFGVGVVLAFPHNENIKAILSEKVAVLQVSWGEYSEELVLEAHSAGVKVVPQVGSFDEA 123
+PFG+GVVLAFPH+ NIKAIL EKVAVLQ+ WG+ S+ELV +AH AG+KVVPQVG+ +EA
Sbjct: 62 KPFGIGVVLAFPHDLNIKAILEEKVAVLQLYWGDCSQELVDDAHRAGLKVVPQVGNVEEA 121
Query: 124 RKAVNAGVDAIIVQGREAGGHVIGQDGLISLLPMVVDLIGDRDIPIIAAGGIVDARGYVA 183
RKAV GVDAIIVQG EAGGHVIG+DGL SLLP VVDL+G+RDIP+IAAGGIVDARGYVA
Sbjct: 122 RKAVAVGVDAIIVQGHEAGGHVIGKDGLFSLLPRVVDLVGERDIPVIAAGGIVDARGYVA 181
Query: 184 ALSLGAQGICLGTRFVASEESYAHPEYKRKLVEMDKTEYTDVFGRARWPGAPHRVLQTPF 243
ALSLGAQG+CLGTRFVA+ ESYAHP YKRKLVE +KTEYTDVFGRARWPGAP RVL+TPF
Sbjct: 182 ALSLGAQGVCLGTRFVATHESYAHPIYKRKLVEYEKTEYTDVFGRARWPGAPQRVLETPF 241
Query: 244 FSNWKNIPAHENEVNQPIIGRSTIHGIEKKIHRLAGTVPNVTTTGDIDSMVMFAGEGVGL 303
F +W+++PA ENEVNQP+IGRSTIHG+EK+I R +GTVPN+TTTGD++SM M+AG+ VGL
Sbjct: 242 FDDWRSLPAGENEVNQPVIGRSTIHGVEKEIRRFSGTVPNMTTTGDLESMAMYAGQSVGL 301
Query: 304 IREILPAGEVVKQLVEGAQLLVHTKFS 330
I+EILPAGEVVK LVE AQ L+ KF+
Sbjct: 302 IKEILPAGEVVKSLVEEAQALILQKFN 328
|
Source: Arabidopsis lyrata subsp. lyrata Species: Arabidopsis lyrata Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|297797441|ref|XP_002866605.1| 2-nitropropane dioxygenase family [Arabidopsis lyrata subsp. lyrata] gi|297312440|gb|EFH42864.1| 2-nitropropane dioxygenase family [Arabidopsis lyrata subsp. lyrata] | Back alignment and taxonomy information |
|---|
Score = 535 bits (1377), Expect = e-149, Method: Compositional matrix adjust.
Identities = 255/327 (77%), Positives = 298/327 (91%)
Query: 4 RGMLGFEYGIVQAPLGPDISGPELVAAVANAGGLGLLRAPDWEAPDYLRDLIRKTRSLTE 63
+G+LGFE+GIVQAPLGPDISGPELVAAVANAGG+GLLR PDWE PDYLR+LIRKT++LT+
Sbjct: 2 KGILGFEHGIVQAPLGPDISGPELVAAVANAGGIGLLRCPDWECPDYLRELIRKTKTLTD 61
Query: 64 RPFGVGVVLAFPHNENIKAILSEKVAVLQVSWGEYSEELVLEAHSAGVKVVPQVGSFDEA 123
+PFG+GVVLAFPH+ NIKAIL E+VAVLQ+ WG+ S+ELV +AH AG+KVVPQVG+ +EA
Sbjct: 62 KPFGIGVVLAFPHDLNIKAILEEEVAVLQLYWGDCSQELVDDAHRAGLKVVPQVGNVEEA 121
Query: 124 RKAVNAGVDAIIVQGREAGGHVIGQDGLISLLPMVVDLIGDRDIPIIAAGGIVDARGYVA 183
RKAV GVDAIIVQG EAGGHVIG+DGL SLLP VVDL+G+RDIP+IAAGGIVDARGYVA
Sbjct: 122 RKAVAVGVDAIIVQGHEAGGHVIGKDGLFSLLPRVVDLVGERDIPVIAAGGIVDARGYVA 181
Query: 184 ALSLGAQGICLGTRFVASEESYAHPEYKRKLVEMDKTEYTDVFGRARWPGAPHRVLQTPF 243
ALSLGAQG+CLGTRFVA+ ESYAHP YKRKLVE +KTEYTDVFGRARWPGAP RVL+TPF
Sbjct: 182 ALSLGAQGVCLGTRFVATHESYAHPIYKRKLVEYEKTEYTDVFGRARWPGAPQRVLETPF 241
Query: 244 FSNWKNIPAHENEVNQPIIGRSTIHGIEKKIHRLAGTVPNVTTTGDIDSMVMFAGEGVGL 303
F +W+++PA ENEVNQP+IGRSTIHG+EK+I R +GTVPN+TTTGD++SM M+AG+ VGL
Sbjct: 242 FDDWRSLPAGENEVNQPVIGRSTIHGVEKEIRRFSGTVPNMTTTGDLESMAMYAGQSVGL 301
Query: 304 IREILPAGEVVKQLVEGAQLLVHTKFS 330
I+EILPAGEVVK LVE AQ L+ KF+
Sbjct: 302 IKEILPAGEVVKSLVEEAQALILQKFN 328
|
Source: Arabidopsis lyrata subsp. lyrata Species: Arabidopsis lyrata Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449438207|ref|XP_004136881.1| PREDICTED: probable nitronate monooxygenase-like [Cucumis sativus] gi|449478857|ref|XP_004155436.1| PREDICTED: probable nitronate monooxygenase-like [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 525 bits (1353), Expect = e-146, Method: Compositional matrix adjust.
Identities = 246/332 (74%), Positives = 300/332 (90%)
Query: 1 MGWRGMLGFEYGIVQAPLGPDISGPELVAAVANAGGLGLLRAPDWEAPDYLRDLIRKTRS 60
MG+ G+LGF+YGIVQAPLGPDISGPELVAAVANAGGLGLLRAPDWE+PDY+R+LIRKTR+
Sbjct: 1 MGFGGLLGFQYGIVQAPLGPDISGPELVAAVANAGGLGLLRAPDWESPDYVRELIRKTRA 60
Query: 61 LTERPFGVGVVLAFPHNENIKAILSEKVAVLQVSWGEYSEELVLEAHSAGVKVVPQVGSF 120
LT++PFG+GV+LAFPH +N+KAIL EKVAV+QV WGE S++LV + HSAGVK++PQVGS
Sbjct: 61 LTDKPFGIGVILAFPHEQNLKAILDEKVAVVQVYWGECSKDLVDQVHSAGVKIIPQVGSV 120
Query: 121 DEARKAVNAGVDAIIVQGREAGGHVIGQDGLISLLPMVVDLIGDRDIPIIAAGGIVDARG 180
+EA KAV+ GVDAIIVQGREAGGHVIGQ+GLIS+LP VV+++GD+DIP+IAAG I D+RG
Sbjct: 121 EEASKAVDVGVDAIIVQGREAGGHVIGQEGLISILPRVVEIVGDKDIPVIAAGSISDSRG 180
Query: 181 YVAALSLGAQGICLGTRFVASEESYAHPEYKRKLVEMDKTEYTDVFGRARWPGAPHRVLQ 240
YVAAL+LGA+G+CLGTRFVA+EES AHP YKRKLVE++ T+YT++FGRARWPGAP RVLQ
Sbjct: 181 YVAALALGARGVCLGTRFVATEESNAHPTYKRKLVELEATDYTNIFGRARWPGAPQRVLQ 240
Query: 241 TPFFSNWKNIPAHENEVNQPIIGRSTIHGIEKKIHRLAGTVPNVTTTGDIDSMVMFAGEG 300
TPF+ +WK++PA+ENE NQP+IGRSTI+G++ I R AGTVPN TT GDI+SM M+AG+G
Sbjct: 241 TPFYDDWKSLPANENESNQPVIGRSTINGLDIDIRRFAGTVPNATTKGDIESMAMYAGQG 300
Query: 301 VGLIREILPAGEVVKQLVEGAQLLVHTKFSGL 332
VGLI+EILPAGEVV++LVEGAQ L+ T S
Sbjct: 301 VGLIKEILPAGEVVRRLVEGAQHLIRTHLSSF 332
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356525868|ref|XP_003531543.1| PREDICTED: probable nitronate monooxygenase-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 523 bits (1347), Expect = e-146, Method: Compositional matrix adjust.
Identities = 246/330 (74%), Positives = 294/330 (89%)
Query: 1 MGWRGMLGFEYGIVQAPLGPDISGPELVAAVANAGGLGLLRAPDWEAPDYLRDLIRKTRS 60
MGWRG+LGFEYGIVQAPLGPDIS P LVAAVANAG LGLLRAPDWE+PDYLR+LI+ TR+
Sbjct: 1 MGWRGILGFEYGIVQAPLGPDISAPPLVAAVANAGALGLLRAPDWESPDYLRELIKTTRT 60
Query: 61 LTERPFGVGVVLAFPHNENIKAILSEKVAVLQVSWGEYSEELVLEAHSAGVKVVPQVGSF 120
LT++PFGVGVVLAFP EN+ IL EKVAVLQV WG+ + ELV +AHSAG+KVVPQVG+
Sbjct: 61 LTDKPFGVGVVLAFPFEENLNVILEEKVAVLQVYWGDCTRELVNKAHSAGIKVVPQVGNI 120
Query: 121 DEARKAVNAGVDAIIVQGREAGGHVIGQDGLISLLPMVVDLIGDRDIPIIAAGGIVDARG 180
+ A++A+ AG D IIVQG EAGGHVIGQDGLI+L+P VVDL+GDR+IP+IAAGGIVDARG
Sbjct: 121 EGAKQAIEAGADGIIVQGLEAGGHVIGQDGLITLVPRVVDLVGDREIPVIAAGGIVDARG 180
Query: 181 YVAALSLGAQGICLGTRFVASEESYAHPEYKRKLVEMDKTEYTDVFGRARWPGAPHRVLQ 240
YVAAL+LGAQG+CLGTRF+A+EES AHP YKRKL+E+D+T YTDVFGRARWPGAP RVLQ
Sbjct: 181 YVAALALGAQGVCLGTRFLATEESNAHPTYKRKLLELDETAYTDVFGRARWPGAPQRVLQ 240
Query: 241 TPFFSNWKNIPAHENEVNQPIIGRSTIHGIEKKIHRLAGTVPNVTTTGDIDSMVMFAGEG 300
TPF+ W+++P HE+E N+P+IG STI+G++K+I R AGTVPN TTTGD++SMVM+AG+G
Sbjct: 241 TPFYKEWRSLPPHESEANKPVIGHSTINGVDKEIRRFAGTVPNKTTTGDLESMVMYAGQG 300
Query: 301 VGLIREILPAGEVVKQLVEGAQLLVHTKFS 330
VGLI+EILPAGEVVK+LVEGAQL++ F
Sbjct: 301 VGLIKEILPAGEVVKRLVEGAQLIMQQNFK 330
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|211906458|gb|ACJ11722.1| 2-nitropropane dioxygenase [Gossypium hirsutum] | Back alignment and taxonomy information |
|---|
Score = 479 bits (1234), Expect = e-133, Method: Compositional matrix adjust.
Identities = 238/330 (72%), Positives = 291/330 (88%)
Query: 1 MGWRGMLGFEYGIVQAPLGPDISGPELVAAVANAGGLGLLRAPDWEAPDYLRDLIRKTRS 60
MGW+G+LGF+YGIV AP+G DI+GPELVAAVANAG L LL AP+W++P+ L++LIRKTR
Sbjct: 1 MGWKGILGFDYGIVLAPMGHDIAGPELVAAVANAGALALLHAPEWDSPEQLKELIRKTRE 60
Query: 61 LTERPFGVGVVLAFPHNENIKAILSEKVAVLQVSWGEYSEELVLEAHSAGVKVVPQVGSF 120
LT++PFGVGV+L FPH ENIKAIL EKVAVLQV+WGE S+ELVLEAH+AGV VVPQVGS
Sbjct: 61 LTDKPFGVGVLLPFPHKENIKAILEEKVAVLQVAWGECSKELVLEAHNAGVMVVPQVGSL 120
Query: 121 DEARKAVNAGVDAIIVQGREAGGHVIGQDGLISLLPMVVDLIGDRDIPIIAAGGIVDARG 180
+EA+K ++AGVDAIIVQG EAGGHV+GQDGLISLLP VVD + D DIP+IAAGGIVDARG
Sbjct: 121 EEAKKVIDAGVDAIIVQGHEAGGHVLGQDGLISLLPRVVDAVADHDIPVIAAGGIVDARG 180
Query: 181 YVAALSLGAQGICLGTRFVASEESYAHPEYKRKLVEMDKTEYTDVFGRARWPGAPHRVLQ 240
YVAAL+LGA+GIC+GTRF+A+ ESYAHP YK+KL+E D+TEYTD+FGRA WPGAP RVL+
Sbjct: 181 YVAALALGAKGICMGTRFLATRESYAHPTYKQKLIEHDETEYTDIFGRALWPGAPQRVLR 240
Query: 241 TPFFSNWKNIPAHENEVNQPIIGRSTIHGIEKKIHRLAGTVPNVTTTGDIDSMVMFAGEG 300
TPF +WK++PAHENE NQP+IGRS IHG+E +I R + + PN TTTG+I++M ++AG+
Sbjct: 241 TPFVCDWKSLPAHENESNQPVIGRSLIHGMETEIQRFSASDPNPTTTGEIENMALYAGQS 300
Query: 301 VGLIREILPAGEVVKQLVEGAQLLVHTKFS 330
VGLI+EILPAGEVVK+LVEGAQ L+ +F+
Sbjct: 301 VGLIKEILPAGEVVKRLVEGAQHLIRQRFN 330
|
Source: Gossypium hirsutum Species: Gossypium hirsutum Genus: Gossypium Family: Malvaceae Order: Malvales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 332 | ||||||
| TAIR|locus:2173413 | 333 | AT5G64250 [Arabidopsis thalian | 0.984 | 0.981 | 0.749 | 3.3e-134 | |
| UNIPROTKB|Q3AC53 | 314 | fabK "Enoyl-(Acyl-carrier-prot | 0.743 | 0.786 | 0.349 | 1.7e-34 | |
| TIGR_CMR|CHY_1449 | 314 | CHY_1449 "enoyl-(acyl-carrier- | 0.743 | 0.786 | 0.349 | 1.7e-34 | |
| UNIPROTKB|Q0BYH8 | 325 | HNE_2786 "Trans-2-enoyl-ACP re | 0.813 | 0.830 | 0.321 | 3.7e-32 | |
| UNIPROTKB|Q0BX33 | 312 | fabK "Trans-2-enoyl-ACP reduct | 0.686 | 0.730 | 0.340 | 9.9e-31 | |
| UNIPROTKB|P71847 | 355 | Rv3553 "POSSIBLE OXIDOREDUCTAS | 0.683 | 0.639 | 0.330 | 1.3e-27 | |
| TIGR_CMR|BA_1385 | 364 | BA_1385 "2-nitropropane dioxyg | 0.481 | 0.439 | 0.341 | 3.5e-26 | |
| UNIPROTKB|Q2GFM2 | 348 | fabK "Trans-2-enoyl-ACP reduct | 0.807 | 0.770 | 0.267 | 4.3e-22 | |
| TIGR_CMR|ECH_0974 | 348 | ECH_0974 "trans-2-enoyl-ACP re | 0.807 | 0.770 | 0.267 | 4.3e-22 | |
| ASPGD|ASPL0000003754 | 353 | AN5854 [Emericella nidulans (t | 0.626 | 0.589 | 0.324 | 7e-22 |
| TAIR|locus:2173413 AT5G64250 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1315 (468.0 bits), Expect = 3.3e-134, P = 3.3e-134
Identities = 245/327 (74%), Positives = 284/327 (86%)
Query: 4 RGMLGFEYGIVQAPLGPDISGPEXXXXXXXXXXXXXXRAPDWEAPDYLRDLIRKTRSLTE 63
+G+LGFEYGIVQAPLGPDISGPE R PDWE PDYLR+LIRKT++LTE
Sbjct: 2 KGILGFEYGIVQAPLGPDISGPELVAAVANAGGIGLLRCPDWECPDYLRELIRKTKTLTE 61
Query: 64 RPFGVGVVLAFPHNENIKAILSEKVAVLQVSWGEYSEELVLEAHSAGVKVVPQVGSFDEA 123
+PFG+GVVLAFPH+ NIK IL EKVAVLQ+ WG+ S+ELV +AH AGVKV+PQVG+ +EA
Sbjct: 62 KPFGIGVVLAFPHDLNIKTILEEKVAVLQLYWGDCSQELVDDAHFAGVKVIPQVGNVEEA 121
Query: 124 RKAVNAGVDAIIVQGREAGGHVIGQDGLISLLPMVVDLIGDRDIPIIAAGGIVDARGYVA 183
RKAV GVDAIIVQGREAGGHVIG+DGL SLLP VVDL+G+RDIP+IAAGGIVD RGYVA
Sbjct: 122 RKAVAVGVDAIIVQGREAGGHVIGKDGLFSLLPRVVDLVGERDIPVIAAGGIVDGRGYVA 181
Query: 184 ALSLGAQGICLGTRFVASEESYAHPEYKRKLVEMDKTEYTDVFGRARWPGAPHRVLQTPF 243
ALSLGAQG+CLGTRFVA+ ESYAHP YKRKL+E +KTEYTDVFGRARWPGAP RVL+TPF
Sbjct: 182 ALSLGAQGVCLGTRFVATHESYAHPIYKRKLIEYEKTEYTDVFGRARWPGAPQRVLETPF 241
Query: 244 FSNWKNIPAHENEVNQPIIGRSTIHGIEKKIHRLAGTVPNVTTTGDIDSMVMFAGEGVGL 303
F +W+++PAHENEVNQPIIGRSTIHG+EK+I R +GTVPN+TTTGD++SM M+AG+ VGL
Sbjct: 242 FDDWRSLPAHENEVNQPIIGRSTIHGVEKEIRRFSGTVPNMTTTGDLESMAMYAGQSVGL 301
Query: 304 IREILPAGEVVKQLVEGAQLLVHTKFS 330
I+EILPAGEVVK LVE AQ L+ KF+
Sbjct: 302 IKEILPAGEVVKSLVEEAQALILQKFN 328
|
|
| UNIPROTKB|Q3AC53 fabK "Enoyl-(Acyl-carrier-protein) reductase II" [Carboxydothermus hydrogenoformans Z-2901 (taxid:246194)] | Back alignment and assigned GO terms |
|---|
Score = 374 (136.7 bits), Expect = 1.7e-34, P = 1.7e-34
Identities = 94/269 (34%), Positives = 153/269 (56%)
Query: 55 IRKTRSLTERPFGVGVVLAFPH-NENIKAILSEKVAVLQVSWGEYSEELVLEAHSAGVKV 113
+RK ++LT++PFGV V+L PH +E ++ I+ EKV V+ G + + + VK+
Sbjct: 55 VRKVKNLTDKPFGVNVMLLSPHVDEVMEVIIEEKVPVITTGAGNPGK-YIKKLKENNVKI 113
Query: 114 VPQVGSFDEARKAVNAGVDAIIVQGREAGGHVIGQDGLISLLPMVVDLIGDRDIPIIAAG 173
+P V S A++ GVDA+I +G E+GGH IG+ ++L+P VVD + IP++AAG
Sbjct: 114 IPVVASVALAKRLEKTGVDAVIAEGHESGGH-IGELTTMALVPQVVDNVS---IPVVAAG 169
Query: 174 GIVDARGYVAALSLGAQGICLGTRFVASEESYAHPEYKRKLVEMDKTEYTDVFGRARWPG 233
GI D RG VAAL+LGAQ + +GTRF+ +EE+ HP K +++ + T + G + G
Sbjct: 170 GIADGRGLVAALALGAQAVQIGTRFLCAEETEIHPAVKEAVIKAGDRD-TVITGAST--G 226
Query: 234 APHRVLQTPFFSNWKNIPAHENEVNQPIIGRSTIHGIEKKIHRLAGTVPNVTTTGDIDSM 293
P RV++ + + E + P +EK AG++ GDI+
Sbjct: 227 HPVRVIKNKLARRFLEL---EQKGAPP-------EELEKLG---AGSLRRCMQEGDIEEG 273
Query: 294 VMFAGEGVGLIREILPAGEVVKQLVEGAQ 322
+ AG+ GLI+EI P E++++++ A+
Sbjct: 274 SLMAGQIAGLIKEIKPVKEIIEEIMHEAR 302
|
|
| TIGR_CMR|CHY_1449 CHY_1449 "enoyl-(acyl-carrier-protein) reductase II" [Carboxydothermus hydrogenoformans Z-2901 (taxid:246194)] | Back alignment and assigned GO terms |
|---|
Score = 374 (136.7 bits), Expect = 1.7e-34, P = 1.7e-34
Identities = 94/269 (34%), Positives = 153/269 (56%)
Query: 55 IRKTRSLTERPFGVGVVLAFPH-NENIKAILSEKVAVLQVSWGEYSEELVLEAHSAGVKV 113
+RK ++LT++PFGV V+L PH +E ++ I+ EKV V+ G + + + VK+
Sbjct: 55 VRKVKNLTDKPFGVNVMLLSPHVDEVMEVIIEEKVPVITTGAGNPGK-YIKKLKENNVKI 113
Query: 114 VPQVGSFDEARKAVNAGVDAIIVQGREAGGHVIGQDGLISLLPMVVDLIGDRDIPIIAAG 173
+P V S A++ GVDA+I +G E+GGH IG+ ++L+P VVD + IP++AAG
Sbjct: 114 IPVVASVALAKRLEKTGVDAVIAEGHESGGH-IGELTTMALVPQVVDNVS---IPVVAAG 169
Query: 174 GIVDARGYVAALSLGAQGICLGTRFVASEESYAHPEYKRKLVEMDKTEYTDVFGRARWPG 233
GI D RG VAAL+LGAQ + +GTRF+ +EE+ HP K +++ + T + G + G
Sbjct: 170 GIADGRGLVAALALGAQAVQIGTRFLCAEETEIHPAVKEAVIKAGDRD-TVITGAST--G 226
Query: 234 APHRVLQTPFFSNWKNIPAHENEVNQPIIGRSTIHGIEKKIHRLAGTVPNVTTTGDIDSM 293
P RV++ + + E + P +EK AG++ GDI+
Sbjct: 227 HPVRVIKNKLARRFLEL---EQKGAPP-------EELEKLG---AGSLRRCMQEGDIEEG 273
Query: 294 VMFAGEGVGLIREILPAGEVVKQLVEGAQ 322
+ AG+ GLI+EI P E++++++ A+
Sbjct: 274 SLMAGQIAGLIKEIKPVKEIIEEIMHEAR 302
|
|
| UNIPROTKB|Q0BYH8 HNE_2786 "Trans-2-enoyl-ACP reductase II" [Hyphomonas neptunium ATCC 15444 (taxid:228405)] | Back alignment and assigned GO terms |
|---|
Score = 352 (129.0 bits), Expect = 3.7e-32, P = 3.7e-32
Identities = 93/289 (32%), Positives = 148/289 (51%)
Query: 47 APDYLRDLIRKTRSLTERPFGVGVVLAFPHN--ENIKAILSEKVAVLQVSWGEYSEELVL 104
+P ++ + ++K R LT++PFGV ++ A P + E++ I++ G ++
Sbjct: 49 SPQFIAEQMKKVRQLTDKPFGVDLLAASPESLEESVDVIINGGADSFIAGLG-VPMPIMD 107
Query: 105 EAHSAGVKVVPQVGSFDEARKAVNAGVDAIIVQGREAGGHVIGQDGLISLLPMVVDLIGD 164
AG+KV+ G+ A KA AG DA+I+QG E GGH GL+ +P+V +
Sbjct: 108 RLKKAGLKVMVVGGAVKHAIKAEQAGCDAVILQGGEGGGHT----GLVGTMPLVAQAVEA 163
Query: 165 RDIPIIAAGGIVDARGYVAALSLGAQGICLGTRFVASEESYAHPEYKRKLVEMDKTEYTD 224
IP+IAAGGI D RG A+L+LGAQG+ +GTRF+AS E++A YK +V T+ T
Sbjct: 164 VKIPVIAAGGIYDGRGLAASLALGAQGVWMGTRFIASAEAHAAGMYKDAVVTAGDTDTT- 222
Query: 225 VFGRAR-WPGAPHRVLQTPFFSNWKNIPAHENEVNQPIIGRSTIHGIEKKIHRLAGTVPN 283
R R + G P R + +W++ P I ST G+ I + G
Sbjct: 223 ---RTRCYSGKPMRCRTNDYIDDWESRPQDIKPFPFQAI-HSTQTGV---IGGIGGITDE 275
Query: 284 VTTTGDIDSMVMFAGEGVGLIREILPAGEVVKQLVEGAQLLVHTKFSGL 332
+ D M G+ G ++E+ P E+V ++ A+ + T+ +GL
Sbjct: 276 AKLSMDKSCFAM--GQSAGGVKEVKPVAEIVADIMRDAEATI-TRMAGL 321
|
|
| UNIPROTKB|Q0BX33 fabK "Trans-2-enoyl-ACP reductase II" [Hyphomonas neptunium ATCC 15444 (taxid:228405)] | Back alignment and assigned GO terms |
|---|
Score = 299 (110.3 bits), Expect = 9.9e-31, Sum P(2) = 9.9e-31
Identities = 81/238 (34%), Positives = 122/238 (51%)
Query: 6 MLGFEYGIVQAPLGPDISGPEXXXXXXXXXXXXXXRAPDWEAPDYLRDLIRKTRSLTERP 65
MLG E I+QA +G I+ + E D +R+ I+K ++LT++P
Sbjct: 13 MLGIEKPIIQAAMGW-IARSQLSSAVSNAGGMGIIETSSGEL-DAIREEIKKMKALTDKP 70
Query: 66 FGVGVVLAFPHNENI-KAILSEKVAVLQVSWGEYSEELVLEAHSAGVKVVPQVGSFDEAR 124
FGV V AF + NI I+ + + + S G+ + AG+ V V S A
Sbjct: 71 FGVNVAQAFVRDPNIIPFIIDQGIKFVTTSAGD-PMKYTATLKEAGLTVFHVVPSLAGAL 129
Query: 125 KAVNAGVDAIIVQGREAGGHVIGQD-GLISLLPMVVDLIGDRDIPIIAAGGIVDARGYVA 183
+A+ AGVD +IV+G E GG +D + L+P V + + +P++AAGGI D R A
Sbjct: 130 RAIEAGVDGLIVEGGEGGGFKNAKDVASMVLIPQVCEAVS---VPVVAAGGITDGRSMAA 186
Query: 184 ALSLGAQGICLGTRFVASEESYAHPEYKRKLVEMDKTEYTDVFGRARWPGAPHRVLQT 241
A SLGA+G+ +GTR ++ ES H +K ++ D T+ T RA PG R L+T
Sbjct: 187 AFSLGAEGVLMGTRILSCAESPVHANWKDAIIGADATD-TVFLNRAG-PGPALRALRT 242
|
|
| UNIPROTKB|P71847 Rv3553 "POSSIBLE OXIDOREDUCTASE" [Mycobacterium tuberculosis (taxid:1773)] | Back alignment and assigned GO terms |
|---|
Score = 309 (113.8 bits), Expect = 1.3e-27, P = 1.3e-27
Identities = 79/239 (33%), Positives = 119/239 (49%)
Query: 6 MLGFEYGIVQAPLGPDISGPEXXXXXXXXXXXXXXRAPDWEAPDYLRDLIRKTRSLTERP 65
++G E+ +VQ +G ++G + D L I K +++T++P
Sbjct: 10 LIGIEHPVVQTGMGW-VAGARLVSATANAGGLGILASATMTL-DELAAAITKVKAVTDKP 67
Query: 66 FGVGVVL-AFPHNENIKAILSEKVAVLQVSWGEYSEELVLEAHSAGVKVVPQVGSFDEAR 124
FGV + A + ++ ++ E V V + ++L+ AG V+P +G+ AR
Sbjct: 68 FGVNIRADAADAGDRVELMIREGVRVASFALAP-KQQLIARLKEAGAVVIPSIGAAKHAR 126
Query: 125 KAVNAGVDAIIVQGREAGGHVIGQDGLISLLPMVVDLIGDRDIPIIAAGGIVDARGYVAA 184
K G DA+IVQG E GGH G LLP V+D + IP+IAAGG D RG AA
Sbjct: 127 KVAAWGADAMIVQGGEGGGHT-GPVATTLLLPSVLDAVAGTGIPVIAAGGFFDGRGLAAA 185
Query: 185 LSLGAQGICLGTRFVASEESYAHPEYKRKLVE--MDKTEYTDVFGRARWPGAPHRVLQT 241
L GA G+ +GTRF+ + +S KR+ ++ +D T T R G PHRVL+T
Sbjct: 186 LCYGAAGVAMGTRFLLTSDSTVPDAVKRRYLQAGLDGTVVT-----TRVDGMPHRVLRT 239
|
|
| TIGR_CMR|BA_1385 BA_1385 "2-nitropropane dioxygenase" [Bacillus anthracis str. Ames (taxid:198094)] | Back alignment and assigned GO terms |
|---|
Score = 235 (87.8 bits), Expect = 3.5e-26, Sum P(2) = 3.5e-26
Identities = 58/170 (34%), Positives = 90/170 (52%)
Query: 64 RPFGVGVV--LAFP--HNENIKAILSEKVAVLQVSWGEYSEELVLEAHSAGVKVVPQVGS 119
R FG+ L P + E + +L EKV V+ ++ +E + + +G+KV+
Sbjct: 97 REFGIEEEEQLKLPKSYKEQFQVLLEEKVPVVSFAFQTLEKEEINDLKRSGIKVIGTATH 156
Query: 120 FDEARKAVNAGVDAIIVQGREAGGH---VIG--QDGLISLLPMVVDLIGD-RDIPIIAAG 173
EA+ GVD I+ QG EAGGH IG QD +I ++ L+ IPI+A G
Sbjct: 157 VAEAKVLAELGVDIIVGQGSEAGGHRGTFIGKEQDAMIGTFALIPQLVAAVPHIPIVAVG 216
Query: 174 GIVDARGYVAALSLGAQGICLGTRFVASEESYAHPEYKRKLVEMDKTEYT 223
G+++ +G VAA +LGA+ + +G+ F+ SEES H YK ++ T T
Sbjct: 217 GVMNGQGLVAAFTLGAEAVQMGSAFLTSEESITHDVYKEAVLHSTDTSTT 266
|
|
| UNIPROTKB|Q2GFM2 fabK "Trans-2-enoyl-ACP reductase II" [Ehrlichia chaffeensis str. Arkansas (taxid:205920)] | Back alignment and assigned GO terms |
|---|
Score = 257 (95.5 bits), Expect = 4.3e-22, P = 4.3e-22
Identities = 75/280 (26%), Positives = 138/280 (49%)
Query: 47 APDYLRDLIRKTRSLTERPFGVGVVLAFPH-NENIKAILSEKVAVLQVSWGEYSEELVLE 105
+P+ LR I T+ LT FGV +++ P NE I+ + + + + ++ G + +++
Sbjct: 51 SPEELRKEIELTQQLTNNAFGVNLIIMHPILNELIEVCIEKNITHIVLAGGIPNSKIISH 110
Query: 106 AHSAGVKVVPQVGSFDEARKAVNAGVDAIIVQGREAGGHV--IGQDGLIS-LLPMVVDLI 162
+A +KV+ S A++ V GVDA+IV+G EAGGH+ + L +LP
Sbjct: 111 IKNAKIKVMCFASSLSIAKRLVRIGVDALIVEGMEAGGHIGPVSTSVLAQEILPYFRQEE 170
Query: 163 GDRDIPIIAAGGIVDARGYVAA--LSLGAQGICLGTRFVASEESYAHPEYKRKLVEMDKT 220
+ +PI AGGI RG + A L +GA G +GT FV + ES H +K ++
Sbjct: 171 SLKKVPIFIAGGI--GRGEMIAHYLIMGASGCQIGTLFVCTHESRVHKNFKEIFIKSSSR 228
Query: 221 EYTDVFGRAR-WPGAPHRVLQTPFFSNWKNIPAHENEVNQPIIGRSTIHGIEKKIHRL-A 278
+ ++ + P R ++ ++ K + ++ ++ G+ + + I + A
Sbjct: 229 DAISSSQLSKDFSVIPVRAIEND--ASMKFLELQKDVISLYHQGKISKEDGQLTIEKFWA 286
Query: 279 GTVPNVTTTGDIDSMVMFAGEGVGLIREILPAGEVVKQLV 318
G + GDI + + AG+ VG++ EI +V++ L+
Sbjct: 287 GALRKAVIDGDITNGSLMAGQSVGMVHEIQTTEQVIQSLI 326
|
|
| TIGR_CMR|ECH_0974 ECH_0974 "trans-2-enoyl-ACP reductase II" [Ehrlichia chaffeensis str. Arkansas (taxid:205920)] | Back alignment and assigned GO terms |
|---|
Score = 257 (95.5 bits), Expect = 4.3e-22, P = 4.3e-22
Identities = 75/280 (26%), Positives = 138/280 (49%)
Query: 47 APDYLRDLIRKTRSLTERPFGVGVVLAFPH-NENIKAILSEKVAVLQVSWGEYSEELVLE 105
+P+ LR I T+ LT FGV +++ P NE I+ + + + + ++ G + +++
Sbjct: 51 SPEELRKEIELTQQLTNNAFGVNLIIMHPILNELIEVCIEKNITHIVLAGGIPNSKIISH 110
Query: 106 AHSAGVKVVPQVGSFDEARKAVNAGVDAIIVQGREAGGHV--IGQDGLIS-LLPMVVDLI 162
+A +KV+ S A++ V GVDA+IV+G EAGGH+ + L +LP
Sbjct: 111 IKNAKIKVMCFASSLSIAKRLVRIGVDALIVEGMEAGGHIGPVSTSVLAQEILPYFRQEE 170
Query: 163 GDRDIPIIAAGGIVDARGYVAA--LSLGAQGICLGTRFVASEESYAHPEYKRKLVEMDKT 220
+ +PI AGGI RG + A L +GA G +GT FV + ES H +K ++
Sbjct: 171 SLKKVPIFIAGGI--GRGEMIAHYLIMGASGCQIGTLFVCTHESRVHKNFKEIFIKSSSR 228
Query: 221 EYTDVFGRAR-WPGAPHRVLQTPFFSNWKNIPAHENEVNQPIIGRSTIHGIEKKIHRL-A 278
+ ++ + P R ++ ++ K + ++ ++ G+ + + I + A
Sbjct: 229 DAISSSQLSKDFSVIPVRAIEND--ASMKFLELQKDVISLYHQGKISKEDGQLTIEKFWA 286
Query: 279 GTVPNVTTTGDIDSMVMFAGEGVGLIREILPAGEVVKQLV 318
G + GDI + + AG+ VG++ EI +V++ L+
Sbjct: 287 GALRKAVIDGDITNGSLMAGQSVGMVHEIQTTEQVIQSLI 326
|
|
| ASPGD|ASPL0000003754 AN5854 [Emericella nidulans (taxid:162425)] | Back alignment and assigned GO terms |
|---|
Score = 255 (94.8 bits), Expect = 7.0e-22, P = 7.0e-22
Identities = 74/228 (32%), Positives = 111/228 (48%)
Query: 107 HSAGVKVVPQVGSFDEARKAVNAGVDAIIVQGREAGGHVIGQDGLISLLPMVVDLIGDRD 166
H GV + +G A KAV G D I QG E GGH G + L+P V +L+ +
Sbjct: 131 HEGGVLYMNMIGHPKHALKAVEVGADLICAQGGEGGGHT-GDIPTVVLIPAVAELLRGKI 189
Query: 167 IP-------IIAAGGIVDARGYVAALSLGAQGICLGTRFVASEESYAHPEYKRKLVEMDK 219
P ++AAGG+ + + AAL LGA + +GTRF+ SEES A +++ L E
Sbjct: 190 SPFTRSQVALVAAGGMYNGQSLAAALMLGAGAVWVGTRFILSEESGASRVHQKALQEAG- 248
Query: 220 TEYTDVFGRARWPGAPHRVLQTPFFSNWKNIPAHENEVNQPIIGRSTIHGIEKKIHRLAG 279
+ D+ + G P TP+ W+N + E+ Q + GR GI H +
Sbjct: 249 --FDDIIRTTIFSGRPLNTQATPYIKRWEN--ERKQEM-QDLQGR----GIIPLAHDMDT 299
Query: 280 TVPNVTTTGDIDSMVMFAGEGVGLIREILPAGEVVKQLVEGAQLLVHT 327
+ + M+M G+ GL+RE LPA ++V+ +VE A L+ T
Sbjct: 300 KKDDDEVLDNAHPMLM--GKVAGLVRERLPAAKIVESMVEEAAALLET 345
|
|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
| ID | Name | Annotated EC number | Identity | Query coverage | Hit coverage | RBH(Q2H) | RBH(H2Q) |
| Q9I4V0 | 2NPD_PSEAE | 1, ., 1, 3, ., 1, 2, ., 1, 6 | 0.3096 | 0.8253 | 0.8353 | yes | no |
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
| Prediction Level | EC number | Confidence of Prediction |
| 3rd Layer | 1.13.12.16 | LOW CONFIDENCE prediction! |
| 3rd Layer | 1.13.12 | LOW CONFIDENCE prediction! |
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
| Your Input: |  |
 |
 |
 |
 |
 |
 |
 |
 |
||
 | GSVIVG00006167001 | SubName- Full=Chromosome undetermined scaffold_165, whole genome shotgun sequence; (339 aa) | |||||||||
(Vitis vinifera) | |||||||||||
Predicted Functional Partners: | |||||||||||
 | GSVIVG00007299001 | SubName- Full=Chromosome chr2 scaffold_187, whole genome shotgun sequence; (431 aa) | • | • | • | 0.962 | |||||
 | GSVIVG00009555001 | SubName- Full=Chromosome chr12 scaffold_238, whole genome shotgun sequence; (211 aa) | • | • | • | 0.898 | |||||
 | GSVIVG00024012001 | SubName- Full=Chromosome chr6 scaffold_3, whole genome shotgun sequence; (392 aa) | • | • | 0.880 | ||||||
 | GSVIVG00014289001 | SubName- Full=Chromosome chr18 scaffold_1, whole genome shotgun sequence; (195 aa) | • | • | 0.811 | ||||||
 | GSVIVG00021060001 | SubName- Full=Chromosome chr14 scaffold_21, whole genome shotgun sequence; (87 aa) | • | • | 0.682 | ||||||
 | GSVIVG00017015001 | SubName- Full=Chromosome chr11 scaffold_14, whole genome shotgun sequence; (486 aa) | • | • | 0.645 | ||||||
 | GSVIVG00016391001 | SubName- Full=Chromosome chr11 scaffold_13, whole genome shotgun sequence; (405 aa) | • | • | • | 0.568 | |||||
 | GSVIVG00024484001 | SubName- Full=Chromosome chr6 scaffold_3, whole genome shotgun sequence; (162 aa) | • | 0.562 | |||||||
 | GSVIVG00025980001 | SubName- Full=Chromosome chr12 scaffold_36, whole genome shotgun sequence; (418 aa) | • | • | • | 0.542 | |||||
 | GSVIVG00011907001 | SubName- Full=Chromosome undetermined scaffold_349, whole genome shotgun sequence; (287 aa) | • | • | • | 0.538 | |||||
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 332 | |||
| cd04730 | 236 | cd04730, NPD_like, 2-Nitropropane dioxygenase (NPD | 7e-73 | |
| COG2070 | 336 | COG2070, COG2070, Dioxygenases related to 2-nitrop | 6e-60 | |
| pfam03060 | 329 | pfam03060, NMO, Nitronate monooxygenase | 2e-59 | |
| TIGR03151 | 307 | TIGR03151, enACPred_II, putative enoyl-[acyl-carri | 3e-58 | |
| cd04743 | 320 | cd04743, NPD_PKS, 2-Nitropropane dioxygenase (NPD) | 5e-09 | |
| cd02809 | 299 | cd02809, alpha_hydroxyacid_oxid_FMN, Family of hom | 2e-07 | |
| cd03332 | 383 | cd03332, LMO_FMN, L-Lactate 2-monooxygenase (LMO) | 2e-06 | |
| COG1304 | 360 | COG1304, idi, Isopentenyl diphosphate isomerase (B | 2e-06 | |
| TIGR03966 | 385 | TIGR03966, actino_HemFlav, heme/flavin dehydrogena | 2e-06 | |
| pfam01070 | 302 | pfam01070, FMN_dh, FMN-dependent dehydrogenase | 5e-06 | |
| PRK11197 | 381 | PRK11197, lldD, L-lactate dehydrogenase; Provision | 9e-05 | |
| cd08556 | 189 | cd08556, GDPD, Glycerophosphodiester phosphodieste | 3e-04 | |
| cd02808 | 392 | cd02808, GltS_FMN, Glutamate synthase (GltS) FMN-b | 6e-04 | |
| TIGR01302 | 450 | TIGR01302, IMP_dehydrog, inosine-5'-monophosphate | 7e-04 | |
| cd04722 | 200 | cd04722, TIM_phosphate_binding, TIM barrel protein | 0.001 | |
| PLN02535 | 364 | PLN02535, PLN02535, glycolate oxidase | 0.001 | |
| pfam02679 | 245 | pfam02679, ComA, (2R)-phospho-3-sulfolactate synth | 0.002 | |
| cd00381 | 325 | cd00381, IMPDH, IMPDH: The catalytic domain of the | 0.003 |
| >gnl|CDD|240081 cd04730, NPD_like, 2-Nitropropane dioxygenase (NPD), one of the nitroalkane oxidizing enzyme families, catalyzes oxidative denitrification of nitroalkanes to their corresponding carbonyl compounds and nitrites | Back alignment and domain information |
|---|
Score = 224 bits (574), Expect = 7e-73
Identities = 108/236 (45%), Positives = 144/236 (61%), Gaps = 17/236 (7%)
Query: 10 EYGIVQAPLGPDISGPELVAAVANAGGLGLLRAPDWEAPDYLRDLIRKTRSLTERPFGVG 69
Y I+QAP+ +S PEL AAV+NAGGLG + A P+ LR IRK R+LT++PFGV
Sbjct: 2 RYPIIQAPMAG-VSTPELAAAVSNAGGLGFIGAGYLT-PEALRAEIRKIRALTDKPFGVN 59
Query: 70 VVLAFPHN---ENIKAILSEKVAVLQVSWGEYSEELVLEAHSAGVKVVPQVGSFDEARKA 126
+++ + ++ L E V V+ S+G E+V +AG+KV+P V S +EARKA
Sbjct: 60 LLVPSSNPDFEALLEVALEEGVPVVSFSFGP-PAEVVERLKAAGIKVIPTVTSVEEARKA 118
Query: 127 VNAGVDAIIVQGREAGGHVIGQD-GLISLLPMVVDLIGDRDIPIIAAGGIVDARGYVAAL 185
AG DA++ QG EAGGH D G +L+P V D + DIP+IAAGGI D RG AAL
Sbjct: 119 EAAGADALVAQGAEAGGHRGTFDIGTFALVPEVRDAV---DIPVIAAGGIADGRGIAAAL 175
Query: 186 SLGAQGICLGTRFVASEESYAHPEYKRKLVE--MDKTEYTDVFGRARWPGAPHRVL 239
+LGA G+ +GTRF+A+EES A P YK+ L+ + T T F G P R L
Sbjct: 176 ALGADGVQMGTRFLATEESGASPAYKQALLAATAEDTVLTRAF-----SGRPARGL 226
|
NDP is a member of the NAD(P)H-dependent flavin oxidoreductase family that reduce a range of alternative electron acceptors. Most use FAD/FMN as a cofactor and NAD(P)H as electron donor. Some contain 4Fe-4S cluster to transfer electron from FAD to FMN. Length = 236 |
| >gnl|CDD|224981 COG2070, COG2070, Dioxygenases related to 2-nitropropane dioxygenase [General function prediction only] | Back alignment and domain information |
|---|
Score = 194 bits (496), Expect = 6e-60
Identities = 118/339 (34%), Positives = 171/339 (50%), Gaps = 36/339 (10%)
Query: 5 GMLGFEYGIVQAPLGPDISGPELVAAVANAGGLGLLRAPDWEAPDYLRDLIRKTRSLTER 64
+LG +Y I+Q + +S PEL AAV+NAGGLG++ + + LR IRK R+LT++
Sbjct: 9 LLLGIKYPIIQGGMAG-VSTPELAAAVSNAGGLGIIASGGLP-AEQLRAEIRKIRALTDK 66
Query: 65 PFGVGV------VLAFPHN--------ENIKAILSE-KVAVLQVSWGEYSEELVLEAHSA 109
PF + + AI+ V V+ S+G E V +A
Sbjct: 67 PFVANNFGSAPAPVNVNILVARRNAAEAGVDAIIEGAGVPVVSTSFGAPPAEFVARLKAA 126
Query: 110 GVKVVPQVGSFDEARKAVNAGVDAIIVQGREAGGHVIGQD---GLISLLPMVVDLIGDRD 166
G+KV+ V + EA KA AG DA+I QG EAGGH G D +L+P VVD +
Sbjct: 127 GIKVIHSVITVREALKAERAGADAVIAQGAEAGGHRGGVDLEVSTFALVPEVVDAV--DG 184
Query: 167 IPIIAAGGIVDARGYVAALSLGAQGICLGTRFVASEESYAHPEYKRKLVEMDKTEYTDVF 226
IP+IAAGGI D RG AAL+LGA G+ +GTRF+A++E+ A YK+ L++ + T +
Sbjct: 185 IPVIAAGGIADGRGIAAALALGADGVQMGTRFLATKEADASDAYKQALLQA-TEDDTVLT 243
Query: 227 GRARWPGAPHRVLQTPFFSNWKNIPAHENEVNQPIIGRSTIHGIEKKIHRLAGTVPNVTT 286
G P RVL+ P + E P + ++ +
Sbjct: 244 KSFT--GKPARVLRNPLT---EEYEDPERAPKAP-LLYPEEGKKVGQLRKAVA------- 290
Query: 287 TGDIDSMVMFAGEGVGLIREILPAGEVVKQLVEGAQLLV 325
GD D ++AG+G GLI +I A +V++ LVE A+ L
Sbjct: 291 LGDADKGNVWAGQGFGLINDIPTAADVIRSLVEEAKELT 329
|
Length = 336 |
| >gnl|CDD|217344 pfam03060, NMO, Nitronate monooxygenase | Back alignment and domain information |
|---|
Score = 193 bits (493), Expect = 2e-59
Identities = 123/349 (35%), Positives = 172/349 (49%), Gaps = 58/349 (16%)
Query: 5 GMLGFEYGIVQAPLGPDISGPELVAAVANAGGLGLLRAPDWEAPDYLRDLIRKTRSLTER 64
+L +Y IVQ P+ IS PEL AAV+ AGGLG++ + PD L IRK R LT++
Sbjct: 6 DLLEIKYPIVQPPMA-GISTPELAAAVSEAGGLGVI-GSGYLTPDRLEKEIRKVRELTDK 63
Query: 65 PFGVGVVL-----------------AFPHNENIKA-----------ILSEKVAVLQVSWG 96
PFGV + L I+ + K V+ +G
Sbjct: 64 PFGVNLFLPQPAEGDDFALDVKEHGNEALKLAIEEGVPDYGDDDDSLKDAKPKVVSFGFG 123
Query: 97 EYSEELVLEAHSAGVKVVPQVGSFDEARKAVNAGVDAIIVQGREAGGHVIGQ---DGLIS 153
E+++ +G KV+P V S EARKA AG DA++ QG EAGGH IG
Sbjct: 124 LPPEDVIERLKESGTKVIPTVSSAKEARKAEAAGADAVVAQGPEAGGH-IGTFVGVTTFL 182
Query: 154 LLPMVVDLIGDRDIPIIAAGGIVDARGYVAALSLGAQGICLGTRFVASEESYAHPEYKRK 213
L+P VVD + DIP+IAAGGI D RG AAL+LGA+G+ +GTRF+A++E+ AHP +K+K
Sbjct: 183 LVPTVVDAV---DIPVIAAGGIADGRGIAAALALGAEGVQIGTRFLATKEADAHPVHKQK 239
Query: 214 LVE--MDKTEYTDVFGRARWPGAPHRVLQTPFFSNWKNIPAHENEVNQPIIGRSTIHGIE 271
+++ D T T F G P RVL+TPF ++E
Sbjct: 240 ILKATEDDTVVTRAFS-----GRPARVLRTPFTREL-----EQSEAPLG---------YP 280
Query: 272 KKIHRLAGTVPNVTTTGDIDSMVMFAGEGVGLIREILPAGEVVKQLVEG 320
+ G GD + ++ G+ GLI EIL E+++ LV+
Sbjct: 281 EAPLMAKGLRAAAVQGGDREEGFLWVGQVAGLIDEILSVKELIEDLVQE 329
|
Nitronate monooxygenase (NMO), formerly referred to as 2-nitropropane dioxygenase (NPD) (EC:1.13.11.32), is an FMN-dependent enzyme that uses molecular oxygen to oxidize (anionic) alkyl nitronates and, in the case of the enzyme from Neurospora crassa, (neutral) nitroalkanes to the corresponding carbonyl compounds and nitrite. Previously classified as 2-nitropropane dioxygenase, but it is now recognized that this was the result of the slow ionization of nitroalkanes to their nitronate (anionic) forms. The enzymes from the fungus Neurospora crassa and the yeast Williopsis saturnus var. mrakii (formerly classified as Hansenula mrakii) contain non-covalently bound FMN as the cofactor. Active towards linear alkyl nitronates of lengths between 2 and 6 carbon atoms and, with lower activity, towards propyl-2-nitronate. The enzyme from N. crassa can also utilize neutral nitroalkanes, but with lower activity. One atom of oxygen is incorporated into the carbonyl group of the aldehyde product. The reaction appears to involve the formation of an enzyme-bound nitronate radical and an a-peroxynitroethane species, which then decomposes, either in the active site of the enzyme or after release, to acetaldehyde and nitrite. Length = 329 |
| >gnl|CDD|132195 TIGR03151, enACPred_II, putative enoyl-[acyl-carrier-protein] reductase II | Back alignment and domain information |
|---|
Score = 189 bits (482), Expect = 3e-58
Identities = 113/325 (34%), Positives = 175/325 (53%), Gaps = 30/325 (9%)
Query: 6 MLGFEYGIVQAPLGPDISGPELVAAVANAGGLGLLRAPDWEAPDYLRDLIRKTRSLTERP 65
+LG EY I Q + ++ L AAV+NAGGLG++ A + PD +R IRK + LT++P
Sbjct: 7 LLGIEYPIFQGGMAW-VATGSLAAAVSNAGGLGIIGAGN-APPDVVRKEIRKVKELTDKP 64
Query: 66 FGVGVVLAFPHNENI-KAILSEKVAVLQVSWG---EYSEELVLEAHSAGVKVVPQVGSFD 121
FGV ++L P + + ++ EKV V+ G +Y L GVKV+P V S
Sbjct: 65 FGVNIMLLSPFVDELVDLVIEEKVPVVTTGAGNPGKYIPRL----KENGVKVIPVVASVA 120
Query: 122 EARKAVNAGVDAIIVQGREAGGHVIGQDGLISLLPMVVDLIGDRDIPIIAAGGIVDARGY 181
A++ AG DA+I +G E+GGH IG+ ++L+P VVD + IP+IAAGGI D RG
Sbjct: 121 LAKRMEKAGADAVIAEGMESGGH-IGELTTMALVPQVVDAV---SIPVIAAGGIADGRGM 176
Query: 182 VAALSLGAQGICLGTRFVASEESYAHPEYKRKLVEMDKTEYTDVFGRARWPGAPHRVLQT 241
AA +LGA+ + +GTRF+ ++E HP YK K++ K + D G P RVL+
Sbjct: 177 AAAFALGAEAVQMGTRFLCAKECNVHPNYKEKVL---KAKDRDTVVTGASTGHPVRVLKN 233
Query: 242 PFFSNWKNIPAHENEVNQPIIGRSTIHGIEKKIHRLAGTVPNVTTTGDIDSMVMFAGEGV 301
+ + ++ EK AG + GD+++ + AG+
Sbjct: 234 KL----------TRKYQELEKEGASPEEFEK---LGAGALRRAVVEGDVENGSVMAGQIA 280
Query: 302 GLIREILPAGEVVKQLVEGAQLLVH 326
GLI+EI PA E+++ ++ A+ ++
Sbjct: 281 GLIKEIKPAKEIIEDIMSEAKEVIK 305
|
This oxidoreductase of the 2-nitropropane dioxygenase family (pfam03060) is commonly found in apparent operons with genes involved in fatty acid biosynthesis. Furthermore, this genomic context generally includes the fabG 3-oxoacyl-[ACP] reductase and lacks the fabI enoyl-[ACP] reductase. Length = 307 |
| >gnl|CDD|240094 cd04743, NPD_PKS, 2-Nitropropane dioxygenase (NPD)-like domain, associated with polyketide synthases (PKS) | Back alignment and domain information |
|---|
Score = 56.4 bits (136), Expect = 5e-09
Identities = 62/257 (24%), Positives = 106/257 (41%), Gaps = 32/257 (12%)
Query: 10 EYGIVQAPLGPDISGPELVAAVANAGGLGLLRAPDWEAPDYLRDLIRKTRS-LTERPFGV 68
Y IVQ P+ E AVA GGL + A + ++ L+ +T L ++P+GV
Sbjct: 2 RYPIVQGPMTRVSDVAEFAVAVAEGGGLPFI-ALALMRGEQVKALLEETAELLGDKPWGV 60
Query: 69 GVVLAFPHN---ENIKAILSEKVAVLQVSWGEYSEELVLEAHSAGVKVVPQVGSFDEARK 125
G++ + + + K ++ G + LEA G+ V S ++
Sbjct: 61 GILGFVDTELRAAQLAVVRAIKPTFALIAGGRPDQARALEA--IGISTYLHVPSPGLLKQ 118
Query: 126 AVNAGVDAIIVQGREAGGHVIGQDGLISLLPMVVDLIGDRDIP-------IIAAGGIVDA 178
+ G I +GRE GGHV G L +D + + P ++ AGGI D
Sbjct: 119 FLENGARKFIFEGRECGGHV-GPRSSFVLWESAIDALLAANGPDKAGKIHLLFAGGIHDE 177
Query: 179 R--GYVAALSLG------AQGICLGTRFVASEESYAH----PEYKRKLVEMDKTEYTDVF 226
R V+AL+ G+ +GT ++ +EE+ + P ++ + + +T
Sbjct: 178 RSAAMVSALAAPLAERGAKVGVLMGTAYLFTEEAVSAGAILPTFQDQAIAATRTALL--- 234
Query: 227 GRARWPGAPHRVLQTPF 243
PG R + +PF
Sbjct: 235 --ETGPGHATRCVVSPF 249
|
NPD is part of the nitroalkaneoxidizing enzyme family, that catalyzes oxidative denitrification of nitroalkanes to their corresponding carbonyl compounds and nitrites. NDPs are members of the NAD(P)H-dependent flavin oxidoreductase family that reduce a range of alternative electron acceptors. Most use FAD/FMN as a cofactor and NAD(P)H as electron donor. Some contain 4Fe-4S cluster to transfer electron from FAD to FMN. Length = 320 |
| >gnl|CDD|239203 cd02809, alpha_hydroxyacid_oxid_FMN, Family of homologous FMN-dependent alpha-hydroxyacid oxidizing enzymes | Back alignment and domain information |
|---|
Score = 51.3 bits (124), Expect = 2e-07
Identities = 29/80 (36%), Positives = 43/80 (53%), Gaps = 12/80 (15%)
Query: 121 DEARKAVNAGVDAIIVQ---GREAGGHVIGQDGLISLLPMVVDLIGDRDIPIIAAGGIVD 177
++A +AV+AG D I+V GR+ G I LP +V +G R I ++ GGI
Sbjct: 184 EDALRAVDAGADGIVVSNHGGRQLDGAP----ATIDALPEIVAAVGGR-IEVLLDGGI-- 236
Query: 178 ARGY--VAALSLGAQGICLG 195
RG + AL+LGA + +G
Sbjct: 237 RRGTDVLKALALGADAVLIG 256
|
This family occurs in both prokaryotes and eukaryotes. Members of this family include flavocytochrome b2 (FCB2), glycolate oxidase (GOX), lactate monooxygenase (LMO), mandelate dehydrogenase (MDH), and long chain hydroxyacid oxidase (LCHAO). In green plants, glycolate oxidase is one of the key enzymes in photorespiration where it oxidizes glycolate to glyoxylate. LMO catalyzes the oxidation of L-lactate to acetate and carbon dioxide. MDH oxidizes (S)-mandelate to phenylglyoxalate. It is an enzyme in the mandelate pathway that occurs in several strains of Pseudomonas which converts (R)-mandelate to benzoate. Length = 299 |
| >gnl|CDD|239448 cd03332, LMO_FMN, L-Lactate 2-monooxygenase (LMO) FMN-binding domain | Back alignment and domain information |
|---|
Score = 48.8 bits (117), Expect = 2e-06
Identities = 26/78 (33%), Positives = 45/78 (57%), Gaps = 8/78 (10%)
Query: 121 DEARKAVNAGVDAIIVQ---GREAGGHVIGQDGLISLLPMVVDLIGDRDIPIIAAGGIVD 177
D+AR+AV AGVD ++V GR+ G + + LP +V+ +GDR + ++ G+
Sbjct: 265 DDARRAVEAGVDGVVVSNHGGRQVDGSI----AALDALPEIVEAVGDR-LTVLFDSGVRT 319
Query: 178 ARGYVAALSLGAQGICLG 195
+ AL+LGA+ + +G
Sbjct: 320 GADIMKALALGAKAVLIG 337
|
LMO is a FMN-containing enzyme that catalyzes the conversion of L-lactate and oxygen to acetate, carbon dioxide, and water. LMO is a member of the family of alpha-hydroxy acid oxidases. It is thought to be a homooctamer with two- and four- fold axes in the center of the octamer. Length = 383 |
| >gnl|CDD|224223 COG1304, idi, Isopentenyl diphosphate isomerase (BS_ypgA, MTH48 and related proteins) [Coenzyme transport and metabolism] | Back alignment and domain information |
|---|
Score = 48.4 bits (116), Expect = 2e-06
Identities = 49/187 (26%), Positives = 69/187 (36%), Gaps = 28/187 (14%)
Query: 25 PELVAAVANAGGLGLLRAPDW----EAPDYLRDLIRKTRSLTERPFG------VGVVLAF 74
P LV ANAG L+ D E + I G
Sbjct: 128 PNLVDRAANAGAKQLVLTVDSPVGGERERDAVNGISAPALAIHLNVLQEATQPEGDRDGK 187
Query: 75 PHNENIKAILSEKVAVLQVSW--GEY-SEELVLEAHSAGVKVVPQVGSFDEARKAVNAGV 131
++I +S ++V +S G S+E G+ ++A A G
Sbjct: 188 GGLDSIAEYVSA-LSVPVISKEDGAGISKEWAGPLVLKGILAP------EDAAGAGGTGA 240
Query: 132 DAIIVQGREAGGHVIGQDGLIS---LLPMVVDLIGDRDIPIIAAGGIVDARGYVAALSLG 188
D I V GG + D IS LP +V+ +GDR I +IA GGI AL+LG
Sbjct: 241 DGIEVS--NHGGRQL--DWGISTADSLPEIVEAVGDR-IEVIADGGIRSGLDVAKALALG 295
Query: 189 AQGICLG 195
A + +G
Sbjct: 296 ADAVGIG 302
|
Length = 360 |
| >gnl|CDD|188481 TIGR03966, actino_HemFlav, heme/flavin dehydrogenase, mycofactocin system | Back alignment and domain information |
|---|
Score = 48.2 bits (115), Expect = 2e-06
Identities = 27/75 (36%), Positives = 43/75 (57%), Gaps = 2/75 (2%)
Query: 121 DEARKAVNAGVDAIIVQGREAGGHVIGQDGLISLLPMVVDLIGDRDIPIIAAGGIVDARG 180
D+AR+AV+AG AI V G ++ G I LP + + +GD+ + ++ GGI
Sbjct: 259 DDARRAVDAGATAISVS-NHGGNNLDGTPAAIRALPAIAEAVGDQ-VEVLLDGGIRRGSD 316
Query: 181 YVAALSLGAQGICLG 195
V AL+LGA+ + +G
Sbjct: 317 VVKALALGARAVMIG 331
|
Members of this protein family possess an N-terminal heme-binding domain and C-terminal flavodehydrogenase domain, and share homology to yeast flavocytochrome b2, to E. coli L-lactate dehydrogenase [cytochrome], to (S)-mandelate dehydrogenase, etc. This enzyme appears only in the context of the mycofactocin system. Interestingly, it is absent from the four species detected so far with mycofactocin but without an F420 biosynthesis system. Length = 385 |
| >gnl|CDD|216281 pfam01070, FMN_dh, FMN-dependent dehydrogenase | Back alignment and domain information |
|---|
Score = 47.1 bits (113), Expect = 5e-06
Identities = 31/84 (36%), Positives = 45/84 (53%), Gaps = 20/84 (23%)
Query: 121 DEARKAVNAGVDAIIVQ---GREAGGHVIGQDGLIS---LLPMVVDLIGDRDIPIIAAGG 174
++A++AV AGVD I+V GR+ DG + LP +V +G R IP++ GG
Sbjct: 182 EDAKRAVEAGVDGIVVSNHGGRQ-------LDGAPATIDALPEIVAAVGGR-IPVLVDGG 233
Query: 175 I---VDARGYVAALSLGAQGICLG 195
I D + AL+LGA + LG
Sbjct: 234 IRRGTDV---LKALALGADAVLLG 254
|
Length = 302 |
| >gnl|CDD|183033 PRK11197, lldD, L-lactate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Score = 43.5 bits (103), Expect = 9e-05
Identities = 30/85 (35%), Positives = 43/85 (50%), Gaps = 14/85 (16%)
Query: 121 DEARKAVNAGVDAIIVQ---GREAGGHVIGQDGLIS---LLPMVVDLIGDRDIPIIAAGG 174
++AR AV G D I+V GR+ DG++S LP + D + DI I+A G
Sbjct: 257 EDARDAVRFGADGIVVSNHGGRQL-------DGVLSSARALPAIADAVKG-DITILADSG 308
Query: 175 IVDARGYVAALSLGAQGICLGTRFV 199
I + V ++LGA + LG FV
Sbjct: 309 IRNGLDVVRMIALGADTVLLGRAFV 333
|
Length = 381 |
| >gnl|CDD|176499 cd08556, GDPD, Glycerophosphodiester phosphodiesterase domain as found in prokaryota and eukaryota, and similar proteins | Back alignment and domain information |
|---|
Score = 41.1 bits (97), Expect = 3e-04
Identities = 17/49 (34%), Positives = 26/49 (53%), Gaps = 1/49 (2%)
Query: 88 VAVLQVSWGEYSEELVLEAHSAGVKVVP-QVGSFDEARKAVNAGVDAII 135
+ + + ELV AH+AG+KV V ++AR+ + GVD II
Sbjct: 138 ADAVNPHYKLLTPELVRAAHAAGLKVYVWTVNDPEDARRLLALGVDGII 186
|
The typical glycerophosphodiester phosphodiesterase domain (GDPD) consists of a TIM barrel and a small insertion domain named the GDPD-insertion (GDPD-I) domain, which is specific for GDPD proteins. This family corresponds to both typical GDPD domain and GDPD-like domain which lacks the GDPD-I region. Members in this family mainly consist of a large family of prokaryotic and eukaryotic glycerophosphodiester phosphodiesterases (GP-GDEs, EC 3.1.4.46), and a number of uncharacterized homologs. Sphingomyelinases D (SMases D) (sphingomyelin phosphodiesterase D, EC 3.1.4.41) from spider venom, SMases D-like proteins, and phospholipase D (PLD) from several pathogenic bacteria are also included in this family. GDPD plays an essential role in glycerol metabolism and catalyzes the hydrolysis of glycerophosphodiesters to sn-glycerol-3-phosphate (G3P) and the corresponding alcohols are major sources of carbon and phosphate. Its catalytic mechanism is based on the metal ion-dependent acid-base reaction, which is similar to that of phosphoinositide-specific phospholipases C (PI-PLCs, EC 3.1.4.11). Both, GDPD related proteins and PI-PLCs, belong to the superfamily of PI-PLC-like phosphodiesterases. Length = 189 |
| >gnl|CDD|239202 cd02808, GltS_FMN, Glutamate synthase (GltS) FMN-binding domain | Back alignment and domain information |
|---|
Score = 41.0 bits (97), Expect = 6e-04
Identities = 32/98 (32%), Positives = 42/98 (42%), Gaps = 11/98 (11%)
Query: 110 GVKVVPQVGSFDEARKAVNAGVDAIIVQGREAG---GHVIGQD--GL--ISLLPMVV--- 159
GVK+V G D A AG D I + G E G + D GL L
Sbjct: 218 GVKLVAGHGEGDIAAGVAAAGADFITIDGAEGGTGAAPLTFIDHVGLPTELGLARAHQAL 277
Query: 160 DLIGDRD-IPIIAAGGIVDARGYVAALSLGAQGICLGT 196
G RD + +IA+GG+ AL+LGA + +GT
Sbjct: 278 VKNGLRDRVSLIASGGLRTGADVAKALALGADAVGIGT 315
|
GltS is a complex iron-sulfur flavoprotein that catalyzes the reductive synthesis of L-glutamate from 2-oxoglutarate and L-glutamine via intramolecular channelling of ammonia, a reaction in the plant, yeast and bacterial pathway for ammonia assimilation. It is a multifunctional enzyme that functions through three distinct active centers, carrying out L-glutamine hydrolysis, conversion of 2-oxoglutarate into L-glutamate, and electron uptake from an electron donor. Length = 392 |
| >gnl|CDD|233350 TIGR01302, IMP_dehydrog, inosine-5'-monophosphate dehydrogenase | Back alignment and domain information |
|---|
Score = 40.8 bits (96), Expect = 7e-04
Identities = 27/100 (27%), Positives = 45/100 (45%), Gaps = 11/100 (11%)
Query: 113 VVPQVGSFDEARKAVNAGVDAI--------IVQGREAGGHVIGQDGLISLLPMVVDLIGD 164
+ V + ++A+ ++AG D + I R G + Q I+ + V +
Sbjct: 269 IAGNVATAEQAKALIDAGADGLRVGIGPGSICTTRIVAGVGVPQ---ITAVYDVAEYAAQ 325
Query: 165 RDIPIIAAGGIVDARGYVAALSLGAQGICLGTRFVASEES 204
IP+IA GGI + V AL+ GA + LG+ + ES
Sbjct: 326 SGIPVIADGGIRYSGDIVKALAAGADAVMLGSLLAGTTES 365
|
This model describes IMP dehydrogenase, an enzyme of GMP biosynthesis. This form contains two CBS domains. This model describes a rather tightly conserved cluster of IMP dehydrogenase sequences, many of which are characterized. The model excludes two related families of proteins proposed also to be IMP dehydrogenases, but without characterized members. These are related families are the subject of separate models [Purines, pyrimidines, nucleosides, and nucleotides, Purine ribonucleotide biosynthesis]. Length = 450 |
| >gnl|CDD|240073 cd04722, TIM_phosphate_binding, TIM barrel proteins share a structurally conserved phosphate binding motif and in general share an eight beta/alpha closed barrel structure | Back alignment and domain information |
|---|
Score = 39.5 bits (92), Expect = 0.001
Identities = 31/114 (27%), Positives = 45/114 (39%), Gaps = 2/114 (1%)
Query: 83 ILSEKVAVLQVSWGEYSEELVLEAHSAGVKVVPQVGSFDEARKAVNAGVDAIIVQGREAG 142
+ V L E EL V V A A AGVD + + G
Sbjct: 89 EIHGAVGYLAREDLELIRELREAVPDVKVVVKLSPTGELAAAAAEEAGVDEVGLGNGGGG 148
Query: 143 GHVIGQDGLISLLPMVVDLIGDRDIPIIAAGGIVDARGYVAALSLGAQGICLGT 196
G G+D + +++ +P+IA GGI D AL+LGA G+ +G+
Sbjct: 149 GG--GRDAVPIADLLLILAKRGSKVPVIAGGGINDPEDAAEALALGADGVIVGS 200
|
Specific for this family is the conserved phosphate binding site at the edges of strands 7 and 8. The phosphate comes either from the substrate, as in the case of inosine monophosphate dehydrogenase (IMPDH), or from ribulose-5-phosphate 3-epimerase (RPE) or from cofactors, like FMN. Length = 200 |
| >gnl|CDD|215294 PLN02535, PLN02535, glycolate oxidase | Back alignment and domain information |
|---|
Score = 39.8 bits (93), Expect = 0.001
Identities = 35/101 (34%), Positives = 51/101 (50%), Gaps = 3/101 (2%)
Query: 121 DEARKAVNAGVDAIIVQGREAGGHVIGQDGLISLLPMVVDLIGDRDIPIIAAGGIVDARG 180
++A KAV GV IIV A + IS+L VV +G R +P++ GG+
Sbjct: 235 EDAIKAVEVGVAGIIVSNHGAR-QLDYSPATISVLEEVVQAVGGR-VPVLLDGGVRRGTD 292
Query: 181 YVAALSLGAQGICLGTRFVASEESYAHPEYKRKLVEMDKTE 221
AL+LGAQ + +G R V + + RK++EM K E
Sbjct: 293 VFKALALGAQAVLVG-RPVIYGLAAKGEDGVRKVIEMLKDE 332
|
Length = 364 |
| >gnl|CDD|190389 pfam02679, ComA, (2R)-phospho-3-sulfolactate synthase (ComA) | Back alignment and domain information |
|---|
Score = 38.7 bits (91), Expect = 0.002
Identities = 17/60 (28%), Positives = 29/60 (48%), Gaps = 14/60 (23%)
Query: 101 ELVLEAHSAGVKVVPQVGSFD--------------EARKAVNAGVDAIIVQGREAGGHVI 146
L+ +A AG KV+ +VG D + + + AG D +I++ RE+GG +
Sbjct: 118 RLIRKAKKAGFKVLSEVGKKDPELDSSLTPDELIEQIERDLEAGADKVIIEARESGGVGL 177
|
In methanobacteria (2R)-phospho-3-sulfolactate synthase (ComA) catalyzes the first step of the biosynthesis of coenzyme M from phosphoenolpyruvate (P-enolpyruvate). This novel enzyme catalyzes the stereospecific Michael addition of sulfite to P-enolpyruvate, forming L-2-phospho-3-sulfolactate (PSL). It is suggested that the ComA-catalyzed reaction is analogous to those reactions catalyzed by beta-elimination enzymes that proceed through an enolate intermediate. Length = 245 |
| >gnl|CDD|238223 cd00381, IMPDH, IMPDH: The catalytic domain of the inosine monophosphate dehydrogenase | Back alignment and domain information |
|---|
Score = 38.7 bits (91), Expect = 0.003
Identities = 28/97 (28%), Positives = 44/97 (45%), Gaps = 13/97 (13%)
Query: 117 VGSFDEARKAVNAGVDAIIVQG---------REAGGHVIGQDGLISLLPMVVDLIGDRDI 167
V + + AR ++AG D + V G R G + Q + + V D +
Sbjct: 143 VVTAEAARDLIDAGADGVKV-GIGPGSICTTRIVTGVGVPQ---ATAVADVAAAARDYGV 198
Query: 168 PIIAAGGIVDARGYVAALSLGAQGICLGTRFVASEES 204
P+IA GGI + V AL+ GA + LG+ ++ES
Sbjct: 199 PVIADGGIRTSGDIVKALAAGADAVMLGSLLAGTDES 235
|
IMPDH catalyzes the NAD-dependent oxidation of inosine 5'-monophosphate (IMP) to xanthosine 5' monophosphate (XMP). It is a rate-limiting step in the de novo synthesis of the guanine nucleotides. There is often a CBS domain inserted in the middle of this domain, which is proposed to play a regulatory role. IMPDH is a key enzyme in the regulation of cell proliferation and differentiation. It has been identified as an attractive target for developing chemotherapeutic agents. Length = 325 |
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 332 | |||
| PF03060 | 330 | NMO: Nitronate monooxygenase; InterPro: IPR004136 | 100.0 | |
| TIGR03151 | 307 | enACPred_II putative enoyl-(acyl-carrier-protein) | 100.0 | |
| COG2070 | 336 | Dioxygenases related to 2-nitropropane dioxygenase | 100.0 | |
| cd04743 | 320 | NPD_PKS 2-Nitropropane dioxygenase (NPD)-like doma | 100.0 | |
| cd04742 | 418 | NPD_FabD 2-Nitropropane dioxygenase (NPD)-like dom | 100.0 | |
| TIGR02814 | 444 | pfaD_fam PfaD family protein. The protein PfaD is | 100.0 | |
| cd04730 | 236 | NPD_like 2-Nitropropane dioxygenase (NPD), one of | 99.97 | |
| cd00381 | 325 | IMPDH IMPDH: The catalytic domain of the inosine m | 99.95 | |
| PRK08649 | 368 | inosine 5-monophosphate dehydrogenase; Validated | 99.95 | |
| PRK06843 | 404 | inosine 5-monophosphate dehydrogenase; Validated | 99.94 | |
| PLN02274 | 505 | inosine-5'-monophosphate dehydrogenase | 99.9 | |
| TIGR01304 | 369 | IMP_DH_rel_2 IMP dehydrogenase family protein. Thi | 99.89 | |
| PTZ00314 | 495 | inosine-5'-monophosphate dehydrogenase; Provisiona | 99.87 | |
| cd02809 | 299 | alpha_hydroxyacid_oxid_FMN Family of homologous FM | 99.87 | |
| PF00478 | 352 | IMPDH: IMP dehydrogenase / GMP reductase domain; I | 99.85 | |
| cd02808 | 392 | GltS_FMN Glutamate synthase (GltS) FMN-binding dom | 99.84 | |
| PRK05437 | 352 | isopentenyl pyrophosphate isomerase; Provisional | 99.84 | |
| cd02811 | 326 | IDI-2_FMN Isopentenyl-diphosphate:dimethylallyl di | 99.84 | |
| TIGR01305 | 343 | GMP_reduct_1 guanosine monophosphate reductase, eu | 99.81 | |
| PRK05096 | 346 | guanosine 5'-monophosphate oxidoreductase; Provisi | 99.8 | |
| PRK05567 | 486 | inosine 5'-monophosphate dehydrogenase; Reviewed | 99.78 | |
| TIGR02151 | 333 | IPP_isom_2 isopentenyl-diphosphate delta-isomerase | 99.78 | |
| PRK07807 | 479 | inosine 5-monophosphate dehydrogenase; Validated | 99.74 | |
| PRK05458 | 326 | guanosine 5'-monophosphate oxidoreductase; Provisi | 99.73 | |
| cd02911 | 233 | arch_FMN Archeal FMN-binding domain. This family o | 99.72 | |
| TIGR01302 | 450 | IMP_dehydrog inosine-5'-monophosphate dehydrogenas | 99.72 | |
| TIGR01306 | 321 | GMP_reduct_2 guanosine monophosphate reductase, ba | 99.69 | |
| COG4981 | 717 | Enoyl reductase domain of yeast-type FAS1 [Lipid m | 99.69 | |
| cd02922 | 344 | FCB2_FMN Flavocytochrome b2 (FCB2) FMN-binding dom | 99.67 | |
| PRK01130 | 221 | N-acetylmannosamine-6-phosphate 2-epimerase; Provi | 99.65 | |
| TIGR00737 | 319 | nifR3_yhdG putative TIM-barrel protein, nifR3 fami | 99.63 | |
| PRK10415 | 321 | tRNA-dihydrouridine synthase B; Provisional | 99.62 | |
| TIGR01303 | 475 | IMP_DH_rel_1 IMP dehydrogenase family protein. Thi | 99.61 | |
| PLN02535 | 364 | glycolate oxidase | 99.58 | |
| PF04131 | 192 | NanE: Putative N-acetylmannosamine-6-phosphate epi | 99.58 | |
| KOG2550 | 503 | consensus IMP dehydrogenase/GMP reductase [Nucleot | 99.57 | |
| cd04740 | 296 | DHOD_1B_like Dihydroorotate dehydrogenase (DHOD) c | 99.56 | |
| cd04737 | 351 | LOX_like_FMN L-Lactate oxidase (LOX) FMN-binding d | 99.55 | |
| PRK06552 | 213 | keto-hydroxyglutarate-aldolase/keto-deoxy-phosphog | 99.55 | |
| PLN02493 | 367 | probable peroxisomal (S)-2-hydroxy-acid oxidase | 99.54 | |
| PLN02979 | 366 | glycolate oxidase | 99.54 | |
| PRK09140 | 206 | 2-dehydro-3-deoxy-6-phosphogalactonate aldolase; R | 99.54 | |
| cd00405 | 203 | PRAI Phosphoribosylanthranilate isomerase (PRAI) c | 99.53 | |
| TIGR00736 | 231 | nifR3_rel_arch TIM-barrel protein, putative. Membe | 99.53 | |
| PRK10550 | 312 | tRNA-dihydrouridine synthase C; Provisional | 99.51 | |
| cd04729 | 219 | NanE N-acetylmannosamine-6-phosphate epimerase (Na | 99.5 | |
| cd03332 | 383 | LMO_FMN L-Lactate 2-monooxygenase (LMO) FMN-bindin | 99.5 | |
| PRK11197 | 381 | lldD L-lactate dehydrogenase; Provisional | 99.49 | |
| TIGR01182 | 204 | eda Entner-Doudoroff aldolase. 2-deydro-3-deoxypho | 99.49 | |
| TIGR01037 | 300 | pyrD_sub1_fam dihydroorotate dehydrogenase (subfam | 99.48 | |
| cd04727 | 283 | pdxS PdxS is a subunit of the pyridoxal 5'-phospha | 99.47 | |
| cd02810 | 289 | DHOD_DHPD_FMN Dihydroorotate dehydrogenase (DHOD) | 99.47 | |
| PRK07455 | 187 | keto-hydroxyglutarate-aldolase/keto-deoxy-phosphog | 99.46 | |
| PRK07114 | 222 | keto-hydroxyglutarate-aldolase/keto-deoxy-phosphog | 99.46 | |
| PRK00043 | 212 | thiE thiamine-phosphate pyrophosphorylase; Reviewe | 99.46 | |
| cd00564 | 196 | TMP_TenI Thiamine monophosphate synthase (TMP synt | 99.45 | |
| COG0352 | 211 | ThiE Thiamine monophosphate synthase [Coenzyme met | 99.45 | |
| PRK07107 | 502 | inosine 5-monophosphate dehydrogenase; Validated | 99.45 | |
| COG0135 | 208 | TrpF Phosphoribosylanthranilate isomerase [Amino a | 99.45 | |
| PF01070 | 356 | FMN_dh: FMN-dependent dehydrogenase; InterPro: IPR | 99.44 | |
| PF01081 | 196 | Aldolase: KDPG and KHG aldolase; InterPro: IPR0008 | 99.43 | |
| PRK07565 | 334 | dihydroorotate dehydrogenase 2; Reviewed | 99.42 | |
| PRK06015 | 201 | keto-hydroxyglutarate-aldolase/keto-deoxy-phosphog | 99.42 | |
| TIGR00742 | 318 | yjbN tRNA dihydrouridine synthase A. Members of th | 99.41 | |
| TIGR00343 | 287 | pyridoxal 5'-phosphate synthase, synthase subunit | 99.41 | |
| cd00452 | 190 | KDPG_aldolase KDPG and KHG aldolase. This family b | 99.4 | |
| COG3010 | 229 | NanE Putative N-acetylmannosamine-6-phosphate epim | 99.4 | |
| PRK07259 | 301 | dihydroorotate dehydrogenase 1B; Reviewed | 99.39 | |
| cd00331 | 217 | IGPS Indole-3-glycerol phosphate synthase (IGPS); | 99.38 | |
| PRK05718 | 212 | keto-hydroxyglutarate-aldolase/keto-deoxy-phosphog | 99.37 | |
| PRK11815 | 333 | tRNA-dihydrouridine synthase A; Provisional | 99.37 | |
| PRK00278 | 260 | trpC indole-3-glycerol-phosphate synthase; Reviewe | 99.37 | |
| PLN02334 | 229 | ribulose-phosphate 3-epimerase | 99.37 | |
| TIGR02708 | 367 | L_lactate_ox L-lactate oxidase. Members of this pr | 99.36 | |
| PRK06512 | 221 | thiamine-phosphate pyrophosphorylase; Provisional | 99.36 | |
| cd04739 | 325 | DHOD_like Dihydroorotate dehydrogenase (DHOD) like | 99.35 | |
| cd04726 | 202 | KGPDC_HPS 3-Keto-L-gulonate 6-phosphate decarboxyl | 99.34 | |
| cd02801 | 231 | DUS_like_FMN Dihydrouridine synthase-like (DUS-lik | 99.33 | |
| TIGR00693 | 196 | thiE thiamine-phosphate pyrophosphorylase. This mo | 99.32 | |
| PRK13958 | 207 | N-(5'-phosphoribosyl)anthranilate isomerase; Provi | 99.32 | |
| PRK05286 | 344 | dihydroorotate dehydrogenase 2; Reviewed | 99.32 | |
| cd04736 | 361 | MDH_FMN Mandelate dehydrogenase (MDH)-like FMN-bin | 99.31 | |
| PLN02826 | 409 | dihydroorotate dehydrogenase | 99.31 | |
| cd02940 | 299 | DHPD_FMN Dihydropyrimidine dehydrogenase (DHPD) FM | 99.31 | |
| COG0800 | 211 | Eda 2-keto-3-deoxy-6-phosphogluconate aldolase [Ca | 99.3 | |
| cd04722 | 200 | TIM_phosphate_binding TIM barrel proteins share a | 99.3 | |
| PRK08883 | 220 | ribulose-phosphate 3-epimerase; Provisional | 99.29 | |
| PRK02615 | 347 | thiamine-phosphate pyrophosphorylase; Provisional | 99.28 | |
| COG0036 | 220 | Rpe Pentose-5-phosphate-3-epimerase [Carbohydrate | 99.28 | |
| TIGR03128 | 206 | RuMP_HxlA 3-hexulose-6-phosphate synthase. at the | 99.27 | |
| PF02581 | 180 | TMP-TENI: Thiamine monophosphate synthase/TENI; In | 99.27 | |
| COG0042 | 323 | tRNA-dihydrouridine synthase [Translation, ribosom | 99.27 | |
| TIGR01036 | 335 | pyrD_sub2 dihydroorotate dehydrogenase, subfamily | 99.27 | |
| PRK01222 | 210 | N-(5'-phosphoribosyl)anthranilate isomerase; Provi | 99.26 | |
| COG0167 | 310 | PyrD Dihydroorotate dehydrogenase [Nucleotide tran | 99.26 | |
| PF01207 | 309 | Dus: Dihydrouridine synthase (Dus); InterPro: IPR0 | 99.25 | |
| TIGR01163 | 210 | rpe ribulose-phosphate 3-epimerase. This family co | 99.25 | |
| cd04741 | 294 | DHOD_1A_like Dihydroorotate dehydrogenase (DHOD) c | 99.24 | |
| PRK07695 | 201 | transcriptional regulator TenI; Provisional | 99.24 | |
| TIGR00262 | 256 | trpA tryptophan synthase, alpha subunit. Tryptopha | 99.23 | |
| PRK09427 | 454 | bifunctional indole-3-glycerol phosphate synthase/ | 99.22 | |
| cd04738 | 327 | DHOD_2_like Dihydroorotate dehydrogenase (DHOD) cl | 99.22 | |
| PF00697 | 197 | PRAI: N-(5'phosphoribosyl)anthranilate (PRA) isome | 99.22 | |
| cd00429 | 211 | RPE Ribulose-5-phosphate 3-epimerase (RPE). This e | 99.21 | |
| PLN02591 | 250 | tryptophan synthase | 99.2 | |
| TIGR00259 | 257 | thylakoid_BtpA membrane complex biogenesis protein | 99.2 | |
| PRK03512 | 211 | thiamine-phosphate pyrophosphorylase; Provisional | 99.2 | |
| KOG0538 | 363 | consensus Glycolate oxidase [Energy production and | 99.2 | |
| PLN02363 | 256 | phosphoribosylanthranilate isomerase | 99.19 | |
| PRK08005 | 210 | epimerase; Validated | 99.19 | |
| PRK08745 | 223 | ribulose-phosphate 3-epimerase; Provisional | 99.18 | |
| CHL00200 | 263 | trpA tryptophan synthase alpha subunit; Provisiona | 99.16 | |
| PRK04180 | 293 | pyridoxal biosynthesis lyase PdxS; Provisional | 99.16 | |
| PRK12290 | 437 | thiE thiamine-phosphate pyrophosphorylase; Reviewe | 99.15 | |
| PRK09722 | 229 | allulose-6-phosphate 3-epimerase; Provisional | 99.14 | |
| PRK13111 | 258 | trpA tryptophan synthase subunit alpha; Provisiona | 99.14 | |
| PRK05581 | 220 | ribulose-phosphate 3-epimerase; Validated | 99.12 | |
| PF00218 | 254 | IGPS: Indole-3-glycerol phosphate synthase; InterP | 99.12 | |
| PLN02495 | 385 | oxidoreductase, acting on the CH-CH group of donor | 99.11 | |
| PF03437 | 254 | BtpA: BtpA family; InterPro: IPR005137 Photosystem | 99.1 | |
| PRK08999 | 312 | hypothetical protein; Provisional | 99.09 | |
| PRK08318 | 420 | dihydropyrimidine dehydrogenase subunit B; Validat | 99.08 | |
| TIGR00007 | 230 | phosphoribosylformimino-5-aminoimidazole carboxami | 99.05 | |
| PRK13125 | 244 | trpA tryptophan synthase subunit alpha; Provisiona | 99.05 | |
| PRK13957 | 247 | indole-3-glycerol-phosphate synthase; Provisional | 99.05 | |
| cd04724 | 242 | Tryptophan_synthase_alpha Ttryptophan synthase (TR | 99.03 | |
| COG1304 | 360 | idi Isopentenyl diphosphate isomerase (BS_ypgA, MT | 99.03 | |
| PLN02898 | 502 | HMP-P kinase/thiamin-monophosphate pyrophosphoryla | 99.02 | |
| COG0134 | 254 | TrpC Indole-3-glycerol phosphate synthase [Amino a | 99.01 | |
| PRK02506 | 310 | dihydroorotate dehydrogenase 1A; Reviewed | 99.01 | |
| COG0159 | 265 | TrpA Tryptophan synthase alpha chain [Amino acid t | 99.0 | |
| PRK14057 | 254 | epimerase; Provisional | 99.0 | |
| COG0434 | 263 | SgcQ Predicted TIM-barrel enzyme [General function | 98.99 | |
| PRK04302 | 223 | triosephosphate isomerase; Provisional | 98.98 | |
| PF01645 | 368 | Glu_synthase: Conserved region in glutamate syntha | 98.97 | |
| PF00834 | 201 | Ribul_P_3_epim: Ribulose-phosphate 3 epimerase fam | 98.96 | |
| PRK08091 | 228 | ribulose-phosphate 3-epimerase; Validated | 98.96 | |
| PF01180 | 295 | DHO_dh: Dihydroorotate dehydrogenase; InterPro: IP | 98.95 | |
| cd04732 | 234 | HisA HisA. Phosphoribosylformimino-5-aminoimidazol | 98.95 | |
| cd04728 | 248 | ThiG Thiazole synthase (ThiG) is the tetrameric en | 98.94 | |
| PF00290 | 259 | Trp_syntA: Tryptophan synthase alpha chain; InterP | 98.93 | |
| PRK13585 | 241 | 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)met | 98.93 | |
| PRK00208 | 250 | thiG thiazole synthase; Reviewed | 98.91 | |
| PLN02460 | 338 | indole-3-glycerol-phosphate synthase | 98.9 | |
| PRK07028 | 430 | bifunctional hexulose-6-phosphate synthase/ribonuc | 98.9 | |
| PTZ00170 | 228 | D-ribulose-5-phosphate 3-epimerase; Provisional | 98.87 | |
| PRK13802 | 695 | bifunctional indole-3-glycerol phosphate synthase/ | 98.87 | |
| TIGR03572 | 232 | WbuZ glycosyl amidation-associated protein WbuZ. T | 98.85 | |
| PRK13307 | 391 | bifunctional formaldehyde-activating enzyme/3-hexu | 98.85 | |
| PRK13803 | 610 | bifunctional phosphoribosylanthranilate isomerase/ | 98.84 | |
| PRK00748 | 233 | 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)met | 98.82 | |
| KOG3111 | 224 | consensus D-ribulose-5-phosphate 3-epimerase [Carb | 98.82 | |
| KOG2335 | 358 | consensus tRNA-dihydrouridine synthase [Translatio | 98.82 | |
| cd04731 | 243 | HisF The cyclase subunit of imidazoleglycerol phos | 98.81 | |
| PRK09517 | 755 | multifunctional thiamine-phosphate pyrophosphoryla | 98.79 | |
| PRK01033 | 258 | imidazole glycerol phosphate synthase subunit HisF | 98.76 | |
| TIGR00735 | 254 | hisF imidazoleglycerol phosphate synthase, cyclase | 98.75 | |
| PRK14024 | 241 | phosphoribosyl isomerase A; Provisional | 98.75 | |
| PRK02083 | 253 | imidazole glycerol phosphate synthase subunit HisF | 98.72 | |
| TIGR01859 | 282 | fruc_bis_ald_ fructose-1,6-bisphosphate aldolase, | 98.66 | |
| PRK09427 | 454 | bifunctional indole-3-glycerol phosphate synthase/ | 98.66 | |
| PF05690 | 247 | ThiG: Thiazole biosynthesis protein ThiG; InterPro | 98.61 | |
| COG0214 | 296 | SNZ1 Pyridoxine biosynthesis enzyme [Coenzyme meta | 98.6 | |
| cd00958 | 235 | DhnA Class I fructose-1,6-bisphosphate (FBP) aldol | 98.59 | |
| PRK06806 | 281 | fructose-bisphosphate aldolase; Provisional | 98.58 | |
| PRK13587 | 234 | 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)met | 98.57 | |
| PF04481 | 242 | DUF561: Protein of unknown function (DUF561); Inte | 98.56 | |
| CHL00162 | 267 | thiG thiamin biosynthesis protein G; Validated | 98.54 | |
| COG0106 | 241 | HisA Phosphoribosylformimino-5-aminoimidazole carb | 98.51 | |
| cd02803 | 327 | OYE_like_FMN_family Old yellow enzyme (OYE)-like F | 98.51 | |
| COG0069 | 485 | GltB Glutamate synthase domain 2 [Amino acid trans | 98.46 | |
| COG0269 | 217 | SgbH 3-hexulose-6-phosphate synthase and related p | 98.45 | |
| PRK04169 | 232 | geranylgeranylglyceryl phosphate synthase-like pro | 98.41 | |
| PRK14114 | 241 | 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)met | 98.41 | |
| PRK11840 | 326 | bifunctional sulfur carrier protein/thiazole synth | 98.37 | |
| cd04723 | 233 | HisA_HisF Phosphoribosylformimino-5-aminoimidazole | 98.37 | |
| KOG1606 | 296 | consensus Stationary phase-induced protein, SOR/SN | 98.35 | |
| TIGR01949 | 258 | AroFGH_arch predicted phospho-2-dehydro-3-deoxyhep | 98.34 | |
| PF00977 | 229 | His_biosynth: Histidine biosynthesis protein; Inte | 98.31 | |
| TIGR01769 | 205 | GGGP geranylgeranylglyceryl phosphate synthase. Th | 98.31 | |
| cd01572 | 268 | QPRTase Quinolinate phosphoribosyl transferase (QA | 98.26 | |
| PRK07226 | 267 | fructose-bisphosphate aldolase; Provisional | 98.23 | |
| KOG4202 | 227 | consensus Phosphoribosylanthranilate isomerase [Am | 98.23 | |
| PRK07428 | 288 | nicotinate-nucleotide pyrophosphorylase; Provision | 98.2 | |
| TIGR01919 | 243 | hisA-trpF 1-(5-phosphoribosyl)-5-[(5-phosphoribosy | 98.2 | |
| TIGR00078 | 265 | nadC nicotinate-nucleotide pyrophosphorylase. Syno | 98.18 | |
| TIGR00735 | 254 | hisF imidazoleglycerol phosphate synthase, cyclase | 98.18 | |
| cd01568 | 269 | QPRTase_NadC Quinolinate phosphoribosyl transferas | 98.18 | |
| TIGR01768 | 223 | GGGP-family geranylgeranylglyceryl phosphate synth | 98.18 | |
| COG2022 | 262 | ThiG Uncharacterized enzyme of thiazole biosynthes | 98.18 | |
| cd04731 | 243 | HisF The cyclase subunit of imidazoleglycerol phos | 98.16 | |
| PRK06801 | 286 | hypothetical protein; Provisional | 98.16 | |
| PRK05848 | 273 | nicotinate-nucleotide pyrophosphorylase; Provision | 98.15 | |
| PRK08072 | 277 | nicotinate-nucleotide pyrophosphorylase; Provision | 98.11 | |
| PRK07315 | 293 | fructose-bisphosphate aldolase; Provisional | 98.1 | |
| PRK05742 | 277 | nicotinate-nucleotide pyrophosphorylase; Provision | 98.1 | |
| PRK11750 | 1485 | gltB glutamate synthase subunit alpha; Provisional | 98.08 | |
| KOG4175 | 268 | consensus Tryptophan synthase alpha chain [Amino a | 98.06 | |
| PRK04128 | 228 | 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)met | 98.05 | |
| cd01573 | 272 | modD_like ModD; Quinolinate phosphoribosyl transfe | 98.04 | |
| PRK13306 | 216 | ulaD 3-keto-L-gulonate-6-phosphate decarboxylase; | 98.03 | |
| PRK13523 | 337 | NADPH dehydrogenase NamA; Provisional | 98.02 | |
| PRK02083 | 253 | imidazole glycerol phosphate synthase subunit HisF | 98.01 | |
| cd02932 | 336 | OYE_YqiM_FMN Old yellow enzyme (OYE) YqjM-like FMN | 97.96 | |
| COG0107 | 256 | HisF Imidazoleglycerol-phosphate synthase [Amino a | 97.95 | |
| PLN02446 | 262 | (5-phosphoribosyl)-5-[(5-phosphoribosylamino)methy | 97.95 | |
| PRK13586 | 232 | 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)met | 97.93 | |
| cd02931 | 382 | ER_like_FMN Enoate reductase (ER)-like FMN-binding | 97.9 | |
| PF09370 | 268 | TIM-br_sig_trns: TIM-barrel signal transduction pr | 97.89 | |
| TIGR00734 | 221 | hisAF_rel hisA/hisF family protein. This alignment | 97.88 | |
| TIGR01304 | 369 | IMP_DH_rel_2 IMP dehydrogenase family protein. Thi | 97.86 | |
| cd04733 | 338 | OYE_like_2_FMN Old yellow enzyme (OYE)-related FMN | 97.83 | |
| PRK08649 | 368 | inosine 5-monophosphate dehydrogenase; Validated | 97.83 | |
| PLN02617 | 538 | imidazole glycerol phosphate synthase hisHF | 97.82 | |
| PF01729 | 169 | QRPTase_C: Quinolinate phosphoribosyl transferase, | 97.81 | |
| cd04735 | 353 | OYE_like_4_FMN Old yellow enzyme (OYE)-related FMN | 97.81 | |
| cd02933 | 338 | OYE_like_FMN Old yellow enzyme (OYE)-like FMN bind | 97.8 | |
| PRK00748 | 233 | 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)met | 97.79 | |
| cd04734 | 343 | OYE_like_3_FMN Old yellow enzyme (OYE)-related FMN | 97.79 | |
| cd04732 | 234 | HisA HisA. Phosphoribosylformimino-5-aminoimidazol | 97.79 | |
| PRK13813 | 215 | orotidine 5'-phosphate decarboxylase; Provisional | 97.77 | |
| PRK08385 | 278 | nicotinate-nucleotide pyrophosphorylase; Provision | 97.75 | |
| PRK14024 | 241 | phosphoribosyl isomerase A; Provisional | 97.73 | |
| cd00945 | 201 | Aldolase_Class_I Class I aldolases. The class I al | 97.71 | |
| TIGR01334 | 277 | modD putative molybdenum utilization protein ModD. | 97.7 | |
| PRK06559 | 290 | nicotinate-nucleotide pyrophosphorylase; Provision | 97.68 | |
| PRK04128 | 228 | 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)met | 97.67 | |
| TIGR03572 | 232 | WbuZ glycosyl amidation-associated protein WbuZ. T | 97.66 | |
| PRK07896 | 289 | nicotinate-nucleotide pyrophosphorylase; Provision | 97.66 | |
| KOG1436 | 398 | consensus Dihydroorotate dehydrogenase [Nucleotide | 97.63 | |
| cd02812 | 219 | PcrB_like PcrB_like proteins. One member of this f | 97.63 | |
| PRK06106 | 281 | nicotinate-nucleotide pyrophosphorylase; Provision | 97.61 | |
| PRK08185 | 283 | hypothetical protein; Provisional | 97.6 | |
| PRK13585 | 241 | 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)met | 97.6 | |
| PLN02716 | 308 | nicotinate-nucleotide diphosphorylase (carboxylati | 97.59 | |
| PRK06978 | 294 | nicotinate-nucleotide pyrophosphorylase; Provision | 97.55 | |
| KOG4201 | 289 | consensus Anthranilate synthase component II [Amin | 97.52 | |
| PRK06096 | 284 | molybdenum transport protein ModD; Provisional | 97.52 | |
| PRK01033 | 258 | imidazole glycerol phosphate synthase subunit HisF | 97.5 | |
| PRK13587 | 234 | 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)met | 97.48 | |
| PRK06543 | 281 | nicotinate-nucleotide pyrophosphorylase; Provision | 97.47 | |
| COG1830 | 265 | FbaB DhnA-type fructose-1,6-bisphosphate aldolase | 97.47 | |
| PRK09016 | 296 | quinolinate phosphoribosyltransferase; Validated | 97.47 | |
| PRK08255 | 765 | salicylyl-CoA 5-hydroxylase; Reviewed | 97.46 | |
| TIGR02129 | 253 | hisA_euk phosphoribosylformimino-5-aminoimidazole | 97.42 | |
| COG0107 | 256 | HisF Imidazoleglycerol-phosphate synthase [Amino a | 97.4 | |
| TIGR01182 | 204 | eda Entner-Doudoroff aldolase. 2-deydro-3-deoxypho | 97.39 | |
| TIGR00007 | 230 | phosphoribosylformimino-5-aminoimidazole carboxami | 97.39 | |
| cd02930 | 353 | DCR_FMN 2,4-dienoyl-CoA reductase (DCR) FMN-bindin | 97.38 | |
| PRK07998 | 283 | gatY putative fructose-1,6-bisphosphate aldolase; | 97.35 | |
| PRK08227 | 264 | autoinducer 2 aldolase; Validated | 97.34 | |
| COG1902 | 363 | NemA NADH:flavin oxidoreductases, Old Yellow Enzym | 97.34 | |
| cd00959 | 203 | DeoC 2-deoxyribose-5-phosphate aldolase (DERA) of | 97.33 | |
| PRK13397 | 250 | 3-deoxy-7-phosphoheptulonate synthase; Provisional | 97.3 | |
| cd04747 | 361 | OYE_like_5_FMN Old yellow enzyme (OYE)-related FMN | 97.29 | |
| COG1646 | 240 | Predicted phosphate-binding enzymes, TIM-barrel fo | 97.26 | |
| TIGR01306 | 321 | GMP_reduct_2 guanosine monophosphate reductase, ba | 97.22 | |
| TIGR00126 | 211 | deoC deoxyribose-phosphate aldolase. Deoxyribose-p | 97.2 | |
| PRK06852 | 304 | aldolase; Validated | 97.18 | |
| TIGR02129 | 253 | hisA_euk phosphoribosylformimino-5-aminoimidazole | 97.16 | |
| cd04723 | 233 | HisA_HisF Phosphoribosylformimino-5-aminoimidazole | 97.15 | |
| PF01884 | 230 | PcrB: PcrB family; InterPro: IPR008205 This entry | 97.15 | |
| PRK00230 | 230 | orotidine 5'-phosphate decarboxylase; Reviewed | 97.11 | |
| cd02929 | 370 | TMADH_HD_FMN Trimethylamine dehydrogenase (TMADH) | 97.03 | |
| PRK07709 | 285 | fructose-bisphosphate aldolase; Provisional | 97.03 | |
| cd00947 | 276 | TBP_aldolase_IIB Tagatose-1,6-bisphosphate (TBP) a | 97.02 | |
| TIGR01858 | 282 | tag_bisphos_ald class II aldolase, tagatose bispho | 97.01 | |
| PRK12737 | 284 | gatY tagatose-bisphosphate aldolase; Reviewed | 97.01 | |
| TIGR00167 | 288 | cbbA ketose-bisphosphate aldolases. fructose-bisph | 97.0 | |
| PRK06552 | 213 | keto-hydroxyglutarate-aldolase/keto-deoxy-phosphog | 96.98 | |
| PF00977 | 229 | His_biosynth: Histidine biosynthesis protein; Inte | 96.96 | |
| PRK09195 | 284 | gatY tagatose-bisphosphate aldolase; Reviewed | 96.96 | |
| COG5564 | 276 | Predicted TIM-barrel enzyme, possibly a dioxygenas | 96.95 | |
| PRK00507 | 221 | deoxyribose-phosphate aldolase; Provisional | 96.95 | |
| PRK06015 | 201 | keto-hydroxyglutarate-aldolase/keto-deoxy-phosphog | 96.95 | |
| PF01791 | 236 | DeoC: DeoC/LacD family aldolase; InterPro: IPR0029 | 96.94 | |
| PRK05835 | 307 | fructose-bisphosphate aldolase; Provisional | 96.91 | |
| PRK12738 | 286 | kbaY tagatose-bisphosphate aldolase; Reviewed | 96.9 | |
| PRK13586 | 232 | 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)met | 96.9 | |
| PRK08610 | 286 | fructose-bisphosphate aldolase; Reviewed | 96.87 | |
| PRK14114 | 241 | 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)met | 96.87 | |
| TIGR01919 | 243 | hisA-trpF 1-(5-phosphoribosyl)-5-[(5-phosphoribosy | 96.87 | |
| PF01081 | 196 | Aldolase: KDPG and KHG aldolase; InterPro: IPR0008 | 96.86 | |
| PLN02617 | 538 | imidazole glycerol phosphate synthase hisHF | 96.83 | |
| PRK12457 | 281 | 2-dehydro-3-deoxyphosphooctonate aldolase; Provisi | 96.8 | |
| PF00478 | 352 | IMPDH: IMP dehydrogenase / GMP reductase domain; I | 96.79 | |
| PRK05458 | 326 | guanosine 5'-monophosphate oxidoreductase; Provisi | 96.79 | |
| cd00956 | 211 | Transaldolase_FSA Transaldolase-like fructose-6-ph | 96.79 | |
| PRK06843 | 404 | inosine 5-monophosphate dehydrogenase; Validated | 96.75 | |
| PF04309 | 175 | G3P_antiterm: Glycerol-3-phosphate responsive anti | 96.73 | |
| PF04131 | 192 | NanE: Putative N-acetylmannosamine-6-phosphate epi | 96.65 | |
| TIGR01362 | 258 | KDO8P_synth 3-deoxy-8-phosphooctulonate synthase. | 96.63 | |
| cd00452 | 190 | KDPG_aldolase KDPG and KHG aldolase. This family b | 96.6 | |
| TIGR01305 | 343 | GMP_reduct_1 guanosine monophosphate reductase, eu | 96.52 | |
| PLN03033 | 290 | 2-dehydro-3-deoxyphosphooctonate aldolase; Provisi | 96.5 | |
| PRK12857 | 284 | fructose-1,6-bisphosphate aldolase; Reviewed | 96.49 | |
| TIGR01361 | 260 | DAHP_synth_Bsub phospho-2-dehydro-3-deoxyheptonate | 96.48 | |
| PRK09250 | 348 | fructose-bisphosphate aldolase; Provisional | 96.48 | |
| PRK07114 | 222 | keto-hydroxyglutarate-aldolase/keto-deoxy-phosphog | 96.47 | |
| PRK05718 | 212 | keto-hydroxyglutarate-aldolase/keto-deoxy-phosphog | 96.46 | |
| cd06557 | 254 | KPHMT-like Ketopantoate hydroxymethyltransferase ( | 96.46 | |
| PLN02274 | 505 | inosine-5'-monophosphate dehydrogenase | 96.42 | |
| PRK00042 | 250 | tpiA triosephosphate isomerase; Provisional | 96.41 | |
| PF01116 | 287 | F_bP_aldolase: Fructose-bisphosphate aldolase clas | 96.4 | |
| PTZ00314 | 495 | inosine-5'-monophosphate dehydrogenase; Provisiona | 96.36 | |
| COG0157 | 280 | NadC Nicotinate-nucleotide pyrophosphorylase [Coen | 96.33 | |
| PLN02446 | 262 | (5-phosphoribosyl)-5-[(5-phosphoribosylamino)methy | 96.31 | |
| PRK13396 | 352 | 3-deoxy-7-phosphoheptulonate synthase; Provisional | 96.29 | |
| cd00311 | 242 | TIM Triosephosphate isomerase (TIM) is a glycolyti | 96.29 | |
| PRK12595 | 360 | bifunctional 3-deoxy-7-phosphoheptulonate synthase | 96.29 | |
| cd06556 | 240 | ICL_KPHMT Members of the ICL/PEPM_KPHMT enzyme sup | 96.25 | |
| PRK11572 | 248 | copper homeostasis protein CutC; Provisional | 96.24 | |
| TIGR00222 | 263 | panB 3-methyl-2-oxobutanoate hydroxymethyltransfer | 96.21 | |
| TIGR01302 | 450 | IMP_dehydrog inosine-5'-monophosphate dehydrogenas | 96.19 | |
| PRK05198 | 264 | 2-dehydro-3-deoxyphosphooctonate aldolase; Provisi | 96.17 | |
| cd01571 | 302 | NAPRTase_B Nicotinate phosphoribosyltransferase (N | 96.15 | |
| TIGR01303 | 475 | IMP_DH_rel_1 IMP dehydrogenase family protein. Thi | 96.15 | |
| COG0106 | 241 | HisA Phosphoribosylformimino-5-aminoimidazole carb | 96.15 | |
| PRK13398 | 266 | 3-deoxy-7-phosphoheptulonate synthase; Provisional | 96.12 | |
| cd00331 | 217 | IGPS Indole-3-glycerol phosphate synthase (IGPS); | 96.11 | |
| PRK05096 | 346 | guanosine 5'-monophosphate oxidoreductase; Provisi | 96.1 | |
| COG0800 | 211 | Eda 2-keto-3-deoxy-6-phosphogluconate aldolase [Ca | 96.04 | |
| cd00381 | 325 | IMPDH IMPDH: The catalytic domain of the inosine m | 96.02 | |
| PRK00311 | 264 | panB 3-methyl-2-oxobutanoate hydroxymethyltransfer | 96.01 | |
| cd02911 | 233 | arch_FMN Archeal FMN-binding domain. This family o | 95.99 | |
| PRK07107 | 502 | inosine 5-monophosphate dehydrogenase; Validated | 95.98 | |
| PRK14565 | 237 | triosephosphate isomerase; Provisional | 95.94 | |
| PRK10605 | 362 | N-ethylmaleimide reductase; Provisional | 95.91 | |
| COG2185 | 143 | Sbm Methylmalonyl-CoA mutase, C-terminal domain/su | 95.91 | |
| PRK01362 | 214 | putative translaldolase; Provisional | 95.85 | |
| PRK07084 | 321 | fructose-bisphosphate aldolase; Provisional | 95.83 | |
| PTZ00333 | 255 | triosephosphate isomerase; Provisional | 95.82 | |
| PF03932 | 201 | CutC: CutC family; InterPro: IPR005627 Copper tran | 95.81 | |
| COG2876 | 286 | AroA 3-deoxy-D-arabino-heptulosonate 7-phosphate ( | 95.79 | |
| KOG2333 | 614 | consensus Uncharacterized conserved protein [Gener | 95.75 | |
| TIGR00640 | 132 | acid_CoA_mut_C methylmalonyl-CoA mutase C-terminal | 95.75 | |
| PRK13399 | 347 | fructose-1,6-bisphosphate aldolase; Provisional | 95.66 | |
| COG0149 | 251 | TpiA Triosephosphate isomerase [Carbohydrate trans | 95.62 | |
| PRK07455 | 187 | keto-hydroxyglutarate-aldolase/keto-deoxy-phosphog | 95.61 | |
| TIGR00875 | 213 | fsa_talC_mipB fructose-6-phosphate aldolase, TalC/ | 95.61 | |
| PRK09140 | 206 | 2-dehydro-3-deoxy-6-phosphogalactonate aldolase; R | 95.58 | |
| PRK00278 | 260 | trpC indole-3-glycerol-phosphate synthase; Reviewe | 95.55 | |
| PRK07807 | 479 | inosine 5-monophosphate dehydrogenase; Validated | 95.52 | |
| PF01645 | 368 | Glu_synthase: Conserved region in glutamate syntha | 95.49 | |
| TIGR00734 | 221 | hisAF_rel hisA/hisF family protein. This alignment | 95.49 | |
| cd03174 | 265 | DRE_TIM_metallolyase DRE-TIM metallolyase superfam | 95.45 | |
| PRK09196 | 347 | fructose-1,6-bisphosphate aldolase; Reviewed | 95.34 | |
| PRK14567 | 253 | triosephosphate isomerase; Provisional | 95.34 | |
| TIGR00419 | 205 | tim triosephosphate isomerase. Triosephosphate iso | 95.34 | |
| PRK15452 | 443 | putative protease; Provisional | 95.34 | |
| PRK08673 | 335 | 3-deoxy-7-phosphoheptulonate synthase; Reviewed | 95.32 | |
| PRK13957 | 247 | indole-3-glycerol-phosphate synthase; Provisional | 95.27 | |
| COG0329 | 299 | DapA Dihydrodipicolinate synthase/N-acetylneuramin | 95.24 | |
| PLN02429 | 315 | triosephosphate isomerase | 95.24 | |
| TIGR03569 | 329 | NeuB_NnaB N-acetylneuraminate synthase. This famil | 95.21 | |
| PLN02424 | 332 | ketopantoate hydroxymethyltransferase | 95.19 | |
| PRK12331 | 448 | oxaloacetate decarboxylase; Provisional | 95.15 | |
| PRK11572 | 248 | copper homeostasis protein CutC; Provisional | 95.1 | |
| TIGR00736 | 231 | nifR3_rel_arch TIM-barrel protein, putative. Membe | 95.05 | |
| COG1954 | 181 | GlpP Glycerol-3-phosphate responsive antiterminato | 95.02 | |
| PRK12656 | 222 | fructose-6-phosphate aldolase; Reviewed | 95.02 | |
| cd00408 | 281 | DHDPS-like Dihydrodipicolinate synthase family. A | 95.01 | |
| PRK05567 | 486 | inosine 5'-monophosphate dehydrogenase; Reviewed | 94.96 | |
| TIGR02313 | 294 | HpaI-NOT-DapA 2,4-dihydroxyhept-2-ene-1,7-dioic ac | 94.78 | |
| cd02922 | 344 | FCB2_FMN Flavocytochrome b2 (FCB2) FMN-binding dom | 94.77 | |
| TIGR00262 | 256 | trpA tryptophan synthase, alpha subunit. Tryptopha | 94.77 | |
| PLN02623 | 581 | pyruvate kinase | 94.74 | |
| PF13714 | 238 | PEP_mutase: Phosphoenolpyruvate phosphomutase; PDB | 94.67 | |
| PRK04147 | 293 | N-acetylneuraminate lyase; Provisional | 94.66 | |
| TIGR03586 | 327 | PseI pseudaminic acid synthase. | 94.61 | |
| TIGR02319 | 294 | CPEP_Pphonmut carboxyvinyl-carboxyphosphonate phos | 94.6 | |
| PRK07259 | 301 | dihydroorotate dehydrogenase 1B; Reviewed | 94.58 | |
| PLN02591 | 250 | tryptophan synthase | 94.52 | |
| TIGR02317 | 285 | prpB methylisocitrate lyase. Members of this famil | 94.51 | |
| PF02548 | 261 | Pantoate_transf: Ketopantoate hydroxymethyltransfe | 94.45 | |
| cd02810 | 289 | DHOD_DHPD_FMN Dihydroorotate dehydrogenase (DHOD) | 94.42 | |
| TIGR00683 | 290 | nanA N-acetylneuraminate lyase. N-acetylneuraminat | 94.41 | |
| cd00951 | 289 | KDGDH 5-dehydro-4-deoxyglucarate dehydratase, also | 94.4 | |
| TIGR02708 | 367 | L_lactate_ox L-lactate oxidase. Members of this pr | 94.38 | |
| PF03932 | 201 | CutC: CutC family; InterPro: IPR005627 Copper tran | 94.37 | |
| PRK11320 | 292 | prpB 2-methylisocitrate lyase; Provisional | 94.29 | |
| PRK12581 | 468 | oxaloacetate decarboxylase; Provisional | 94.24 | |
| cd02072 | 128 | Glm_B12_BD B12 binding domain of glutamate mutase | 94.22 | |
| TIGR01037 | 300 | pyrD_sub1_fam dihydroorotate dehydrogenase (subfam | 94.21 | |
| cd00952 | 309 | CHBPH_aldolase Trans-o-hydroxybenzylidenepyruvate | 94.19 | |
| PRK14041 | 467 | oxaloacetate decarboxylase; Provisional | 94.19 | |
| TIGR01521 | 347 | FruBisAldo_II_B fructose-bisphosphate aldolase, cl | 94.16 | |
| cd00954 | 288 | NAL N-Acetylneuraminic acid aldolase, also called | 94.14 | |
| TIGR01520 | 357 | FruBisAldo_II_A fructose-bisphosphate aldolase, cl | 94.14 | |
| PRK12653 | 220 | fructose-6-phosphate aldolase; Reviewed | 94.13 | |
| PRK14040 | 593 | oxaloacetate decarboxylase; Provisional | 94.13 | |
| COG0274 | 228 | DeoC Deoxyribose-phosphate aldolase [Nucleotide tr | 94.11 | |
| COG5016 | 472 | Pyruvate/oxaloacetate carboxyltransferase [Energy | 94.11 | |
| TIGR02320 | 285 | PEP_mutase phosphoenolpyruvate phosphomutase. A cl | 94.08 | |
| PRK05265 | 239 | pyridoxine 5'-phosphate synthase; Provisional | 94.01 | |
| cd06557 | 254 | KPHMT-like Ketopantoate hydroxymethyltransferase ( | 93.98 | |
| PRK03170 | 292 | dihydrodipicolinate synthase; Provisional | 93.92 | |
| cd00003 | 234 | PNPsynthase Pyridoxine 5'-phosphate (PNP) synthase | 93.91 | |
| PF13714 | 238 | PEP_mutase: Phosphoenolpyruvate phosphomutase; PDB | 93.89 | |
| PRK09197 | 350 | fructose-bisphosphate aldolase; Provisional | 93.88 | |
| PF02679 | 244 | ComA: (2R)-phospho-3-sulfolactate synthase (ComA); | 93.84 | |
| PRK03620 | 303 | 5-dehydro-4-deoxyglucarate dehydratase; Provisiona | 93.77 | |
| cd00377 | 243 | ICL_PEPM Members of the ICL/PEPM enzyme family cat | 93.72 | |
| cd03332 | 383 | LMO_FMN L-Lactate 2-monooxygenase (LMO) FMN-bindin | 93.7 | |
| COG3010 | 229 | NanE Putative N-acetylmannosamine-6-phosphate epim | 93.67 | |
| PRK10415 | 321 | tRNA-dihydrouridine synthase B; Provisional | 93.65 | |
| PRK14042 | 596 | pyruvate carboxylase subunit B; Provisional | 93.63 | |
| cd04740 | 296 | DHOD_1B_like Dihydroorotate dehydrogenase (DHOD) c | 93.59 | |
| PRK01130 | 221 | N-acetylmannosamine-6-phosphate 2-epimerase; Provi | 93.59 | |
| cd00950 | 284 | DHDPS Dihydrodipicolinate synthase (DHDPS) is a ke | 93.52 | |
| TIGR03849 | 237 | arch_ComA phosphosulfolactate synthase. This model | 93.51 | |
| PRK08662 | 343 | nicotinate phosphoribosyltransferase; Reviewed | 93.51 | |
| PLN02561 | 253 | triosephosphate isomerase | 93.48 | |
| cd04726 | 202 | KGPDC_HPS 3-Keto-L-gulonate 6-phosphate decarboxyl | 93.46 | |
| PLN02417 | 280 | dihydrodipicolinate synthase | 93.44 | |
| cd04729 | 219 | NanE N-acetylmannosamine-6-phosphate epimerase (Na | 93.43 | |
| TIGR00559 | 237 | pdxJ pyridoxine 5'-phosphate synthase. PdxJ is req | 93.43 | |
| PRK04180 | 293 | pyridoxal biosynthesis lyase PdxS; Provisional | 93.4 | |
| PRK12655 | 220 | fructose-6-phosphate aldolase; Reviewed | 93.38 | |
| cd04725 | 216 | OMP_decarboxylase_like Orotidine 5'-phosphate deca | 93.26 | |
| PRK12858 | 340 | tagatose 1,6-diphosphate aldolase; Reviewed | 93.25 | |
| PF00724 | 341 | Oxidored_FMN: NADH:flavin oxidoreductase / NADH ox | 93.25 | |
| cd02940 | 299 | DHPD_FMN Dihydropyrimidine dehydrogenase (DHPD) FM | 93.25 | |
| PRK00208 | 250 | thiG thiazole synthase; Reviewed | 93.19 | |
| PRK07188 | 352 | nicotinate phosphoribosyltransferase; Provisional | 93.19 | |
| PRK12330 | 499 | oxaloacetate decarboxylase; Provisional | 93.18 | |
| TIGR01163 | 210 | rpe ribulose-phosphate 3-epimerase. This family co | 93.17 | |
| PRK13305 | 218 | sgbH 3-keto-L-gulonate-6-phosphate decarboxylase; | 93.13 | |
| PRK05692 | 287 | hydroxymethylglutaryl-CoA lyase; Provisional | 93.08 | |
| COG0042 | 323 | tRNA-dihydrouridine synthase [Translation, ribosom | 93.06 | |
| KOG2335 | 358 | consensus tRNA-dihydrouridine synthase [Translatio | 93.04 | |
| TIGR00674 | 285 | dapA dihydrodipicolinate synthase. Dihydrodipicoli | 93.0 | |
| PF03102 | 241 | NeuB: NeuB family; InterPro: IPR013132 NeuB is the | 92.99 | |
| PLN02493 | 367 | probable peroxisomal (S)-2-hydroxy-acid oxidase | 92.99 | |
| cd04728 | 248 | ThiG Thiazole synthase (ThiG) is the tetrameric en | 92.96 | |
| PLN02979 | 366 | glycolate oxidase | 92.92 | |
| COG3142 | 241 | CutC Uncharacterized protein involved in copper re | 92.91 | |
| COG1411 | 229 | Uncharacterized protein related to proFAR isomeras | 92.87 | |
| COG2513 | 289 | PrpB PEP phosphonomutase and related enzymes [Carb | 92.82 | |
| PRK13111 | 258 | trpA tryptophan synthase subunit alpha; Provisiona | 92.8 | |
| PRK09282 | 592 | pyruvate carboxylase subunit B; Validated | 92.76 | |
| PRK12376 | 236 | putative translaldolase; Provisional | 92.68 | |
| TIGR03128 | 206 | RuMP_HxlA 3-hexulose-6-phosphate synthase. at the | 92.68 | |
| PLN02411 | 391 | 12-oxophytodienoate reductase | 92.66 | |
| cd02071 | 122 | MM_CoA_mut_B12_BD methylmalonyl CoA mutase B12 bin | 92.63 | |
| PRK05437 | 352 | isopentenyl pyrophosphate isomerase; Provisional | 92.56 | |
| PRK15492 | 260 | triosephosphate isomerase; Provisional | 92.55 | |
| PF00072 | 112 | Response_reg: Response regulator receiver domain; | 92.46 | |
| TIGR03239 | 249 | GarL 2-dehydro-3-deoxyglucarate aldolase. In E. co | 92.45 | |
| PF01207 | 309 | Dus: Dihydrouridine synthase (Dus); InterPro: IPR0 | 92.43 | |
| TIGR02151 | 333 | IPP_isom_2 isopentenyl-diphosphate delta-isomerase | 92.38 | |
| TIGR00737 | 319 | nifR3_yhdG putative TIM-barrel protein, nifR3 fami | 92.35 | |
| PF03102 | 241 | NeuB: NeuB family; InterPro: IPR013132 NeuB is the | 92.19 | |
| cd04738 | 327 | DHOD_2_like Dihydroorotate dehydrogenase (DHOD) cl | 92.18 | |
| TIGR02317 | 285 | prpB methylisocitrate lyase. Members of this famil | 92.17 | |
| PRK11320 | 292 | prpB 2-methylisocitrate lyase; Provisional | 92.16 | |
| TIGR01501 | 134 | MthylAspMutase methylaspartate mutase, S subunit. | 92.06 | |
| CHL00200 | 263 | trpA tryptophan synthase alpha subunit; Provisiona | 92.0 | |
| TIGR03249 | 296 | KdgD 5-dehydro-4-deoxyglucarate dehydratase. 5-deh | 91.94 | |
| PLN02858 | 1378 | fructose-bisphosphate aldolase | 91.91 | |
| cd00516 | 281 | PRTase_typeII Phosphoribosyltransferase (PRTase) t | 91.85 | |
| cd08556 | 189 | GDPD Glycerophosphodiester phosphodiesterase domai | 91.83 | |
| cd08562 | 229 | GDPD_EcUgpQ_like Glycerophosphodiester phosphodies | 91.81 | |
| PRK00311 | 264 | panB 3-methyl-2-oxobutanoate hydroxymethyltransfer | 91.72 | |
| cd02809 | 299 | alpha_hydroxyacid_oxid_FMN Family of homologous FM | 91.58 | |
| TIGR01859 | 282 | fruc_bis_ald_ fructose-1,6-bisphosphate aldolase, | 91.55 | |
| cd02808 | 392 | GltS_FMN Glutamate synthase (GltS) FMN-binding dom | 91.53 | |
| TIGR00742 | 318 | yjbN tRNA dihydrouridine synthase A. Members of th | 91.5 | |
| cd00956 | 211 | Transaldolase_FSA Transaldolase-like fructose-6-ph | 91.44 | |
| PRK09454 | 249 | ugpQ cytoplasmic glycerophosphodiester phosphodies | 91.42 | |
| cd00945 | 201 | Aldolase_Class_I Class I aldolases. The class I al | 91.41 | |
| cd07938 | 274 | DRE_TIM_HMGL 3-hydroxy-3-methylglutaryl-CoA lyase, | 91.29 | |
| PF00218 | 254 | IGPS: Indole-3-glycerol phosphate synthase; InterP | 91.25 | |
| cd00377 | 243 | ICL_PEPM Members of the ICL/PEPM enzyme family cat | 91.23 | |
| cd07944 | 266 | DRE_TIM_HOA_like 4-hydroxy-2-oxovalerate aldolase- | 91.18 | |
| COG0157 | 280 | NadC Nicotinate-nucleotide pyrophosphorylase [Coen | 91.18 | |
| PRK10550 | 312 | tRNA-dihydrouridine synthase C; Provisional | 91.16 | |
| cd04739 | 325 | DHOD_like Dihydroorotate dehydrogenase (DHOD) like | 91.1 | |
| cd06556 | 240 | ICL_KPHMT Members of the ICL/PEPM_KPHMT enzyme sup | 91.09 | |
| PF04476 | 235 | DUF556: Protein of unknown function (DUF556); Inte | 91.08 | |
| cd08563 | 230 | GDPD_TtGDE_like Glycerophosphodiester phosphodiest | 91.01 | |
| cd02801 | 231 | DUS_like_FMN Dihydrouridine synthase-like (DUS-lik | 90.96 | |
| cd03174 | 265 | DRE_TIM_metallolyase DRE-TIM metallolyase superfam | 90.95 | |
| COG0191 | 286 | Fba Fructose/tagatose bisphosphate aldolase [Carbo | 90.94 | |
| TIGR00343 | 287 | pyridoxal 5'-phosphate synthase, synthase subunit | 90.86 | |
| PF00701 | 289 | DHDPS: Dihydrodipicolinate synthetase family; Inte | 90.73 | |
| PRK02227 | 238 | hypothetical protein; Provisional | 90.72 | |
| COG0352 | 211 | ThiE Thiamine monophosphate synthase [Coenzyme met | 90.71 | |
| cd00946 | 345 | FBP_aldolase_IIA Class II Type A, Fructose-1,6-bis | 90.65 | |
| KOG0623 | 541 | consensus Glutamine amidotransferase/cyclase [Amin | 90.61 | |
| TIGR03569 | 329 | NeuB_NnaB N-acetylneuraminate synthase. This famil | 90.58 | |
| PRK04302 | 223 | triosephosphate isomerase; Provisional | 90.56 | |
| PF03740 | 239 | PdxJ: Pyridoxal phosphate biosynthesis protein Pdx | 90.56 | |
| cd08564 | 265 | GDPD_GsGDE_like Glycerophosphodiester phosphodiest | 90.54 | |
| TIGR03217 | 333 | 4OH_2_O_val_ald 4-hydroxy-2-oxovalerate aldolase. | 90.53 | |
| PRK05283 | 257 | deoxyribose-phosphate aldolase; Provisional | 90.5 | |
| PRK14905 | 355 | triosephosphate isomerase/PTS system glucose/sucro | 90.5 | |
| COG0826 | 347 | Collagenase and related proteases [Posttranslation | 90.5 | |
| PRK11815 | 333 | tRNA-dihydrouridine synthase A; Provisional | 90.49 | |
| PRK00043 | 212 | thiE thiamine-phosphate pyrophosphorylase; Reviewe | 90.41 |
| >PF03060 NMO: Nitronate monooxygenase; InterPro: IPR004136 2-Nitropropane dioxygenase (1 | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.4e-62 Score=456.31 Aligned_cols=298 Identities=46% Similarity=0.737 Sum_probs=221.1
Q ss_pred cchhhcCCccceecCCCCCCCCcHHHHHHHHhCCCceeecCCCCCCHHHHHHHHHHHHhhcCCcEEEEeecCCCCHHH--
Q 020013 2 GWRGMLGFEYGIVQAPLGPDISGPELVAAVANAGGLGLLRAPDWEAPDYLRDLIRKTRSLTERPFGVGVVLAFPHNEN-- 79 (332)
Q Consensus 2 ~~~~~l~~~~Pii~apM~~g~s~~~la~avs~aGglG~i~~~~~~~~e~~~~~i~~~r~~~~~p~gvnl~~~~~~~~~-- 79 (332)
.|+++|||+|||||+||+ ++++|+|+++||++||+|+|+.+ +.+++++++.|+++|+++++||+||+++..+....
T Consensus 3 ~~t~~lgi~~PIiqapM~-~is~~~LaaAVs~aGglG~l~~~-~~~~~~l~~~i~~~~~~t~~pfgvnl~~~~~~~~~~~ 80 (330)
T PF03060_consen 3 RLTELLGIKYPIIQAPMG-GISTPELAAAVSNAGGLGFLGAG-GLTPEQLREEIRKIRALTDKPFGVNLFLPPPDPADEE 80 (330)
T ss_dssp HHHHHHT-SSSEEE---T-TTSSHHHHHHHHHTTSBEEEECT-TSSHHHHHHHHHHHHHH-SS-EEEEEETTSTTHHHH-
T ss_pred hHHHHhCCCcCEEcCCCC-CCChHHHHHHHHhCCCEeecccc-ccChHHHHHHHHHHHhhccccccccccccCcccchhh
Confidence 478999999999999998 69999999999999999999974 68999999999999999999999999987653211
Q ss_pred -----------HHHHH--------------hcCCcEEEEccCCCcHHHHHHHHhCCCEEEEecCCHHHHHHHHHcCCCEE
Q 020013 80 -----------IKAIL--------------SEKVAVLQVSWGEYSEELVLEAHSAGVKVVPQVGSFDEARKAVNAGVDAI 134 (332)
Q Consensus 80 -----------~~~~~--------------~~~~~~I~~~~g~~~~~~i~~~~~~g~~v~~~v~s~~~a~~a~~~g~D~i 134 (332)
.+... +.++++|.+++|.|+.++++++++.|++++++|+|+++|+++.+.|+|+|
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~G~p~~~~i~~l~~~gi~v~~~v~s~~~A~~a~~~G~D~i 160 (330)
T PF03060_consen 81 DAWPKELGNAVLELCIEEGVPFEEQLDVALEAKPDVVSFGFGLPPPEVIERLHAAGIKVIPQVTSVREARKAAKAGADAI 160 (330)
T ss_dssp HHHHHHTHHHHHHHHHHTT-SHHHHHHHHHHS--SEEEEESSSC-HHHHHHHHHTT-EEEEEESSHHHHHHHHHTT-SEE
T ss_pred hhhhhhhHHHHHHHHHHhCcccccccccccccceEEEEeecccchHHHHHHHHHcCCccccccCCHHHHHHhhhcCCCEE
Confidence 23333 44556999999987789999999999999999999999999999999999
Q ss_pred EEecCCCCcccCCCC-chhhhHHHHHHHhCCCCCcEEeecCcCCHHHHHHHHHcCcceeeeccccccCccCCCCHHHHHH
Q 020013 135 IVQGREAGGHVIGQD-GLISLLPMVVDLIGDRDIPIIAAGGIVDARGYVAALSLGAQGICLGTRFVASEESYAHPEYKRK 213 (332)
Q Consensus 135 vv~G~eaGGh~~~~~-~~~~ll~~i~~~~~~~~iPviaaGGI~~~~~v~~al~~GA~gV~~GT~fl~t~Es~~~~~~k~~ 213 (332)
|+||+|+|||.+... +++.|++++++.+ ++|||++|||+|+++++++|++|||||+|||+|++|+||++|+.||++
T Consensus 161 v~qG~eAGGH~g~~~~~~~~L~~~v~~~~---~iPViaAGGI~dg~~iaaal~lGA~gV~~GTrFl~t~Es~~~~~~K~~ 237 (330)
T PF03060_consen 161 VAQGPEAGGHRGFEVGSTFSLLPQVRDAV---DIPVIAAGGIADGRGIAAALALGADGVQMGTRFLATEESGASDAYKQA 237 (330)
T ss_dssp EEE-TTSSEE---SSG-HHHHHHHHHHH----SS-EEEESS--SHHHHHHHHHCT-SEEEESHHHHTSTTS-S-HHHHHH
T ss_pred EEeccccCCCCCccccceeeHHHHHhhhc---CCcEEEecCcCCHHHHHHHHHcCCCEeecCCeEEecccccChHHHHHH
Confidence 999999999984244 4899999999998 799999999999999999999999999999999999999999999999
Q ss_pred HhcCCCceEEEEecccCCCCCCceeecChHHHhhhcCCCCCccCCCcccccccccchHHH--HHHhhCCCCcccccCCcc
Q 020013 214 LVEMDKTEYTDVFGRARWPGAPHRVLQTPFFSNWKNIPAHENEVNQPIIGRSTIHGIEKK--IHRLAGTVPNVTTTGDID 291 (332)
Q Consensus 214 ~~~~~~t~~t~~~~~~~~~g~~~R~l~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~gd~~ 291 (332)
|++++++++.... ...|+|+|+|+|+|+++|.+.. .....++ .++.+.+. +++. +...||.|
T Consensus 238 l~~a~~~dtv~t~---~~~G~~~R~l~n~~~~~~~~~~--~~~~~~~-----~~~~~~~~~~~~~~------~~~~g~~~ 301 (330)
T PF03060_consen 238 LVDATEEDTVLTR---SFSGRPARVLRNPFTEEWEERS--PAPLPYP-----EQHYLTKDFCLRKA------AKEGGDVE 301 (330)
T ss_dssp HHHGGTT-EEEES---TTTTS-EEEE-SHHHHHHHHHH--HHHCCCH-----HHHHHHTHHHHHHH------HCCHT-TT
T ss_pred HHhCCCCCEEEEe---ecccchhhhhCcHHHHHHHhcc--cccccch-----hHHHHhhhhHHHHH------HHhcCCcc
Confidence 9998766633222 2359999999999999988511 1111122 12222222 3332 22337999
Q ss_pred ceeeeccccccccCCCCCHHHHHHHHHHH
Q 020013 292 SMVMFAGEGVGLIREILPAGEVVKQLVEG 320 (332)
Q Consensus 292 ~~~~~aG~~~~~i~~i~~~~~iv~~l~~e 320 (332)
++.+|+||++++|+++.|++|||++|++|
T Consensus 302 ~~~~~aGq~~g~i~~i~~a~eiv~~L~~e 330 (330)
T PF03060_consen 302 RGLLWAGQGVGLIKEIRPAAEIVEELVEE 330 (330)
T ss_dssp TS--B--GGGGGG-S-B-HHHHHHHHHHH
T ss_pred ceeEecChhhhhhcCCCcHHHHHHHHHhC
Confidence 99999999999999999999999999987
|
13.11.32 from EC) catalyses the oxidation of nitroalkanes into their corresponding carbonyl compounds and nitrite using eithr FAD or FMN as a cofactor []. This entry also includes fatty acid synthase subunit beta (2.3.1.86 from EC), which catalyses the formation of long- chain fatty acids from acetyl-CoA, malonyl-CoA and NADPH. The beta subunit contains domains for: [acyl-carrier protein] acetyltransferase and malonyltransferase, S-acyl fatty acid synthase thioesterase, enoyl-[acyl-carrier protein] reductase, and 3-hydroxypalmitoyl-[acyl-carrier protein] dehydratase. ; GO: 0018580 nitronate monooxygenase activity, 0055114 oxidation-reduction process; PDB: 2Z6I_B 2Z6J_B 3BW2_A 3BW3_A 3BW4_A 2GJL_A 2GJN_A 3BO9_A. |
| >TIGR03151 enACPred_II putative enoyl-(acyl-carrier-protein) reductase II | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-58 Score=430.16 Aligned_cols=303 Identities=35% Similarity=0.594 Sum_probs=260.9
Q ss_pred cchhhcCCccceecCCCCCCCCcHHHHHHHHhCCCceeecCCCCCCHHHHHHHHHHHHhhcCCcEEEEeecCCCC-HHHH
Q 020013 2 GWRGMLGFEYGIVQAPLGPDISGPELVAAVANAGGLGLLRAPDWEAPDYLRDLIRKTRSLTERPFGVGVVLAFPH-NENI 80 (332)
Q Consensus 2 ~~~~~l~~~~Pii~apM~~g~s~~~la~avs~aGglG~i~~~~~~~~e~~~~~i~~~r~~~~~p~gvnl~~~~~~-~~~~ 80 (332)
.|+++||++||||||||+ ++++++|+++||++||+|+|+.+ +.+++.+++.++++|+.+++|||+|++...+. .+.+
T Consensus 3 ~l~~~lgi~~Pii~apM~-~~s~~~la~avs~aGglG~l~~~-~~~~~~l~~~i~~~~~~t~~pfgvn~~~~~~~~~~~~ 80 (307)
T TIGR03151 3 RLCDLLGIEYPIFQGGMA-WVATGSLAAAVSNAGGLGIIGAG-NAPPDVVRKEIRKVKELTDKPFGVNIMLLSPFVDELV 80 (307)
T ss_pred hhhHHhCCCCCEEcCCCC-CCCCHHHHHHHHhCCCcceeccc-cCCHHHHHHHHHHHHHhcCCCcEEeeecCCCCHHHHH
Confidence 478999999999999998 79999999999999999999985 57899999999999999999999999886554 5667
Q ss_pred HHHHhcCCcEEEEccCCCcHHHHHHHHhCCCEEEEecCCHHHHHHHHHcCCCEEEEecCCCCcccCCCCchhhhHHHHHH
Q 020013 81 KAILSEKVAVLQVSWGEYSEELVLEAHSAGVKVVPQVGSFDEARKAVNAGVDAIIVQGREAGGHVIGQDGLISLLPMVVD 160 (332)
Q Consensus 81 ~~~~~~~~~~I~~~~g~~~~~~i~~~~~~g~~v~~~v~s~~~a~~a~~~g~D~ivv~G~eaGGh~~~~~~~~~ll~~i~~ 160 (332)
+.++++++++|.+++|. |.++++++++.|+++++.|++.++++++++.|+|+|+++|+++|||. +..+++.+++++++
T Consensus 81 ~~~~~~~v~~v~~~~g~-p~~~i~~lk~~g~~v~~~v~s~~~a~~a~~~GaD~Ivv~g~eagGh~-g~~~~~~ll~~v~~ 158 (307)
T TIGR03151 81 DLVIEEKVPVVTTGAGN-PGKYIPRLKENGVKVIPVVASVALAKRMEKAGADAVIAEGMESGGHI-GELTTMALVPQVVD 158 (307)
T ss_pred HHHHhCCCCEEEEcCCC-cHHHHHHHHHcCCEEEEEcCCHHHHHHHHHcCCCEEEEECcccCCCC-CCCcHHHHHHHHHH
Confidence 88899999999999876 56799999999999999999999999999999999999999999997 56678999999999
Q ss_pred HhCCCCCcEEeecCcCCHHHHHHHHHcCcceeeeccccccCccCCCCHHHHHHHhcCCCceEEEEecccCCCCCCceeec
Q 020013 161 LIGDRDIPIIAAGGIVDARGYVAALSLGAQGICLGTRFVASEESYAHPEYKRKLVEMDKTEYTDVFGRARWPGAPHRVLQ 240 (332)
Q Consensus 161 ~~~~~~iPviaaGGI~~~~~v~~al~~GA~gV~~GT~fl~t~Es~~~~~~k~~~~~~~~t~~t~~~~~~~~~g~~~R~l~ 240 (332)
.+ ++|||++|||.+++++.+++.+||+||++||+|+.|.||++|+.||+++++++.+++.... ..+|+|+|+|+
T Consensus 159 ~~---~iPviaaGGI~~~~~~~~al~~GA~gV~iGt~f~~t~Es~~~~~~k~~l~~~~~~dt~~t~---~~~G~~~R~l~ 232 (307)
T TIGR03151 159 AV---SIPVIAAGGIADGRGMAAAFALGAEAVQMGTRFLCAKECNVHPNYKEKVLKAKDRDTVVTG---ASTGHPVRVLK 232 (307)
T ss_pred Hh---CCCEEEECCCCCHHHHHHHHHcCCCEeecchHHhcccccCCCHHHHHHHHhCCCCCEEEEe---cCCCCceeeec
Confidence 87 7999999999999999999999999999999999999999999999999998665532222 13589999999
Q ss_pred ChHHHhhhcCCCCCccCCCcccccccccchHHHHHHhhCCCCcccccCCccceeeeccccccccCCCCCHHHHHHHHHHH
Q 020013 241 TPFFSNWKNIPAHENEVNQPIIGRSTIHGIEKKIHRLAGTVPNVTTTGDIDSMVMFAGEGVGLIREILPAGEVVKQLVEG 320 (332)
Q Consensus 241 n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gd~~~~~~~aG~~~~~i~~i~~~~~iv~~l~~e 320 (332)
|+|+++|.+.+.... ..++ ..+.....++ .+..+||.|++.+|+||++++|+++.|++|||++|++|
T Consensus 233 n~~~~~~~~~~~~~~-~~~~-----~~~~~~~~~~-------~~~~~g~~~~~~~~aGq~~~~i~~i~~~~eiv~~l~~e 299 (307)
T TIGR03151 233 NKLTRKYQELEKEGA-SPEE-----FEKLGAGALR-------RAVVEGDVENGSVMAGQIAGLIKEIKPAKEIIEDIMSE 299 (307)
T ss_pred CHHHHHHHhhcccCC-CHHH-----HHHHHHHHHH-------HHHHcCCccceeEeccchhhhcCCCCcHHHHHHHHHHH
Confidence 999999986443211 0111 1111222232 23468999999999999999999999999999999999
Q ss_pred HHHHHHh
Q 020013 321 AQLLVHT 327 (332)
Q Consensus 321 ~~~~~~~ 327 (332)
+.+++++
T Consensus 300 ~~~~~~~ 306 (307)
T TIGR03151 300 AKEVIKR 306 (307)
T ss_pred HHHHHhc
Confidence 9888764
|
This oxidoreductase of the 2-nitropropane dioxygenase family (pfam03060) is commonly found in apparent operons with genes involved in fatty acid biosynthesis. Furthermore, this genomic context generally includes the fabG 3-oxoacyl-[ACP] reductase and lacks the fabI enoyl-[ACP] reductase. |
| >COG2070 Dioxygenases related to 2-nitropropane dioxygenase [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.4e-55 Score=407.57 Aligned_cols=309 Identities=39% Similarity=0.604 Sum_probs=260.6
Q ss_pred CcchhhcCCccceecCCCCCCCCcHHHHHHHHhCCCceeecCCCCCCHHHHHHHHHHHHhhcCCc-----EE-----EE-
Q 020013 1 MGWRGMLGFEYGIVQAPLGPDISGPELVAAVANAGGLGLLRAPDWEAPDYLRDLIRKTRSLTERP-----FG-----VG- 69 (332)
Q Consensus 1 ~~~~~~l~~~~Pii~apM~~g~s~~~la~avs~aGglG~i~~~~~~~~e~~~~~i~~~r~~~~~p-----~g-----vn- 69 (332)
|.++..++++|||||+||+ ++|+++||.+||++|++|++... ..+.+.++++++++++.+++| |+ +|
T Consensus 5 ~~~~~~~~i~~PIiq~gM~-~vs~~~LA~Avs~aGglG~ia~~-~~~~e~l~~~i~~~~~~~~~p~~~~~f~~~~~~v~~ 82 (336)
T COG2070 5 TRFILLLGIKYPIIQGGMA-GVSTPELAAAVSNAGGLGIIASG-GLPAEQLRAEIRKIRALTDKPFVANNFGSAPAPVNV 82 (336)
T ss_pred chhhcccCccCCeecCCcc-ccCcHHHHHHHhccCCccccccc-cCCHHHHHHHHHHHHHhcCCcchhcccccccccchh
Confidence 3566889999999999998 69999999999999999988874 678899999999999999999 33 33
Q ss_pred -eecC--CCCHHHHHHHHhc-CCcEEEEccCCCcHHHHHHHHhCCCEEEEecCCHHHHHHHHHcCCCEEEEecCCCCccc
Q 020013 70 -VVLA--FPHNENIKAILSE-KVAVLQVSWGEYSEELVLEAHSAGVKVVPQVGSFDEARKAVNAGVDAIIVQGREAGGHV 145 (332)
Q Consensus 70 -l~~~--~~~~~~~~~~~~~-~~~~I~~~~g~~~~~~i~~~~~~g~~v~~~v~s~~~a~~a~~~g~D~ivv~G~eaGGh~ 145 (332)
++.. ....+.++.+++. ++.++.+++|.+|.++++.++..|+++++.+.++++++++++.|+|.||++|.|+|||.
T Consensus 83 ~~l~~~~~~~~~~~~~ii~~~~vpvv~~~~g~~~~~~i~~~~~~g~~v~~~v~~~~~A~~~~~~G~d~vI~~g~eAGGH~ 162 (336)
T COG2070 83 NILVARRNAAEAGVDAIIEGAGVPVVSTSFGAPPAEFVARLKAAGIKVIHSVITVREALKAERAGADAVIAQGAEAGGHR 162 (336)
T ss_pred heecccccchHHhhhhHHhcCCCCEEeccCCCCcHHHHHHHHHcCCeEEEEeCCHHHHHHHHhCCCCEEEecCCcCCCcC
Confidence 3332 2335667777777 99999999997789999999999999999999999999999999999999999999998
Q ss_pred CC---CCchhhhHHHHHHHhCCCC-CcEEeecCcCCHHHHHHHHHcCcceeeeccccccCccCCCCHHHHHHHhcCCCce
Q 020013 146 IG---QDGLISLLPMVVDLIGDRD-IPIIAAGGIVDARGYVAALSLGAQGICLGTRFVASEESYAHPEYKRKLVEMDKTE 221 (332)
Q Consensus 146 ~~---~~~~~~ll~~i~~~~~~~~-iPviaaGGI~~~~~v~~al~~GA~gV~~GT~fl~t~Es~~~~~~k~~~~~~~~t~ 221 (332)
+. ..+++.|++++++.+ + +|||++|||+|++++.+++++||+||||||+|+.|+||++|+.||++|++++++|
T Consensus 163 g~~~~~~~t~~Lv~ev~~~~---~~iPViAAGGI~dg~~i~AAlalGA~gVq~GT~Fl~t~Ea~a~~~~K~~l~~a~~~D 239 (336)
T COG2070 163 GGVDLEVSTFALVPEVVDAV---DGIPVIAAGGIADGRGIAAALALGADGVQMGTRFLATKEADASDAYKQALLQATEDD 239 (336)
T ss_pred CCCCCCccHHHHHHHHHHHh---cCCCEEEecCccChHHHHHHHHhccHHHHhhhhhhcccccCCCHHHHHHHhcccccC
Confidence 43 567899999999999 6 9999999999999999999999999999999999999999999999999998777
Q ss_pred EEEEecccCCCCCCceeecChHHHhhhcCCCCC-ccCCCcccccccccchHHHHHHhhCCCCcccccCCccceeeecccc
Q 020013 222 YTDVFGRARWPGAPHRVLQTPFFSNWKNIPAHE-NEVNQPIIGRSTIHGIEKKIHRLAGTVPNVTTTGDIDSMVMFAGEG 300 (332)
Q Consensus 222 ~t~~~~~~~~~g~~~R~l~n~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gd~~~~~~~aG~~ 300 (332)
+....+ .+|+|+|+++|+|++++...+... ....++. ++.....+++ +...+|.+.+.+|+||.
T Consensus 240 tv~~~~---~~G~paR~i~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~-------a~~~~~~~~~~~~aGq~ 304 (336)
T COG2070 240 TVLTKS---FTGKPARVLRNPLTEEYEDPERAPKAPLLYPE-----EGKKVGQLRK-------AVALGDADKGNVWAGQG 304 (336)
T ss_pred eEEEcc---cCCCcchhhCcHHHHhhhcccccccCCCccch-----hhhcchHHHH-------HHhhcchhhcchhcchh
Confidence 544333 259999999999999987544321 1112221 1112222222 45688999999999999
Q ss_pred ccccCCCCCHHHHHHHHHHHHHHHHHhhh
Q 020013 301 VGLIREILPAGEVVKQLVEGAQLLVHTKF 329 (332)
Q Consensus 301 ~~~i~~i~~~~~iv~~l~~e~~~~~~~~~ 329 (332)
.++++++.|++++++++.+++.+.++...
T Consensus 305 ~~~~~~~~~~~~~i~~~~e~~~~~~~~~~ 333 (336)
T COG2070 305 FGLINDIPTAADVIRSLVEEAKELTAGLA 333 (336)
T ss_pred hhhccccccHHHHHHHHHHHHHHHHHhhh
Confidence 99999999999999999999999876643
|
|
| >cd04743 NPD_PKS 2-Nitropropane dioxygenase (NPD)-like domain, associated with polyketide synthases (PKS) | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-51 Score=379.01 Aligned_cols=233 Identities=25% Similarity=0.449 Sum_probs=209.4
Q ss_pred CccceecCCCCCCCCc-HHHHHHHHhCCCceeecCCCCCCHHHHHHHHHHHHhh-cCCcEEEEeecCCC---CHHHHHHH
Q 020013 9 FEYGIVQAPLGPDISG-PELVAAVANAGGLGLLRAPDWEAPDYLRDLIRKTRSL-TERPFGVGVVLAFP---HNENIKAI 83 (332)
Q Consensus 9 ~~~Pii~apM~~g~s~-~~la~avs~aGglG~i~~~~~~~~e~~~~~i~~~r~~-~~~p~gvnl~~~~~---~~~~~~~~ 83 (332)
++|||||+||+ |+++ |+|+++|||+||+|+|..+ +.++++++++|+++|++ +++|||||++...+ ..++++.+
T Consensus 1 ~~yPIiqgpM~-~vs~~~~LaaAVS~AGgLG~la~~-~~~~e~l~~~i~~~~~l~tdkPfGVnl~~~~~~~~~~~~l~vi 78 (320)
T cd04743 1 TRYPIVQGPMT-RVSDVAEFAVAVAEGGGLPFIALA-LMRGEQVKALLEETAELLGDKPWGVGILGFVDTELRAAQLAVV 78 (320)
T ss_pred CCCCEECCCcC-CCCCcHHHHHHHHhCCccccCCCC-CCCHHHHHHHHHHHHHhccCCCeEEEEeccCCCcchHHHHHHH
Confidence 58999999998 7987 9999999999999999984 78999999999999996 89999999975422 36789999
Q ss_pred HhcCCcEEEEccCCCcHHHHHHHHhCCCEEEEecCCHHHHHHHHHcCCCEEEEecCCCCcccCCCCchhhhHHHHHHHhC
Q 020013 84 LSEKVAVLQVSWGEYSEELVLEAHSAGVKVVPQVGSFDEARKAVNAGVDAIIVQGREAGGHVIGQDGLISLLPMVVDLIG 163 (332)
Q Consensus 84 ~~~~~~~I~~~~g~~~~~~i~~~~~~g~~v~~~v~s~~~a~~a~~~g~D~ivv~G~eaGGh~~~~~~~~~ll~~i~~~~~ 163 (332)
+++++++|++++|. |.. ++++++.|+++++.|+|+++++++++.|+|+||++|+|+|||. +..+++.|+|++.+.+.
T Consensus 79 ~e~~v~~V~~~~G~-P~~-~~~lk~~Gi~v~~~v~s~~~A~~a~~~GaD~vVaqG~EAGGH~-G~~~t~~L~~~v~~~l~ 155 (320)
T cd04743 79 RAIKPTFALIAGGR-PDQ-ARALEAIGISTYLHVPSPGLLKQFLENGARKFIFEGRECGGHV-GPRSSFVLWESAIDALL 155 (320)
T ss_pred HhcCCcEEEEcCCC-hHH-HHHHHHCCCEEEEEeCCHHHHHHHHHcCCCEEEEecCcCcCCC-CCCCchhhHHHHHHHHH
Confidence 99999999999886 444 7999999999999999999999999999999999999999998 67788999999988762
Q ss_pred C-------CCCcEEeecCcCCHHHHHHHHHcCc--------ceeeeccccccCccCC----CCHHHHHHHhcCCCceEEE
Q 020013 164 D-------RDIPIIAAGGIVDARGYVAALSLGA--------QGICLGTRFVASEESY----AHPEYKRKLVEMDKTEYTD 224 (332)
Q Consensus 164 ~-------~~iPviaaGGI~~~~~v~~al~~GA--------~gV~~GT~fl~t~Es~----~~~~~k~~~~~~~~t~~t~ 224 (332)
. .++|||++|||+|+++++.++.+|| +||+|||+|++|+||. +|+.||++++++++|+++.
T Consensus 156 ~~~~~~~~~~iPViAAGGI~dgr~~aaalaLGA~~~~~Ga~~GV~mGTrFl~t~Es~~~~~~~~~~k~~~l~a~~td~~~ 235 (320)
T cd04743 156 AANGPDKAGKIHLLFAGGIHDERSAAMVSALAAPLAERGAKVGVLMGTAYLFTEEAVSAGAILPTFQDQAIAATRTALLE 235 (320)
T ss_pred HhhcccccCCccEEEEcCCCCHHHHHHHHHcCCcccccccccEEEEccHHhcchhhcCcccccHHHHHHHHhCCCceEEE
Confidence 1 2699999999999999999999998 8999999999999998 8899999999999998765
Q ss_pred EecccCCCCCCceeecChHHHhhhcCC
Q 020013 225 VFGRARWPGAPHRVLQTPFFSNWKNIP 251 (332)
Q Consensus 225 ~~~~~~~~g~~~R~l~n~~~~~~~~~~ 251 (332)
.+ +|+|.|+|+|+|+++|.+.+
T Consensus 236 t~-----~G~~~R~l~n~~~~~~~~~~ 257 (320)
T cd04743 236 TG-----PGHATRCVVSPFVDEFRATR 257 (320)
T ss_pred ec-----CCCceeecCCHHHHHHHHhh
Confidence 54 48999999999999997644
|
NPD is part of the nitroalkaneoxidizing enzyme family, that catalyzes oxidative denitrification of nitroalkanes to their corresponding carbonyl compounds and nitrites. NDPs are members of the NAD(P)H-dependent flavin oxidoreductase family that reduce a range of alternative electron acceptors. Most use FAD/FMN as a cofactor and NAD(P)H as electron donor. Some contain 4Fe-4S cluster to transfer electron from FAD to FMN. |
| >cd04742 NPD_FabD 2-Nitropropane dioxygenase (NPD)-like domain, associated with the (acyl-carrier-protein) S-malonyltransferase FabD | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-43 Score=335.36 Aligned_cols=243 Identities=25% Similarity=0.341 Sum_probs=195.7
Q ss_pred cchhhcCCccceecCCCCCCCCcHHHHHHHHhCCCceeecCCCCCCHHHHHHHHHHHHhh-c-CCcEEEEeecCCC----
Q 020013 2 GWRGMLGFEYGIVQAPLGPDISGPELVAAVANAGGLGLLRAPDWEAPDYLRDLIRKTRSL-T-ERPFGVGVVLAFP---- 75 (332)
Q Consensus 2 ~~~~~l~~~~Pii~apM~~g~s~~~la~avs~aGglG~i~~~~~~~~e~~~~~i~~~r~~-~-~~p~gvnl~~~~~---- 75 (332)
+|+++||++||||||||+.|+++++|+++||++|++|+++++ +.+++++++.|+++|+. + ++|||||++.+..
T Consensus 5 ~f~~~lgiryPii~gpMa~Giss~eLVaAvs~AGgLG~lgag-~l~~e~l~~~I~~ir~~lt~~~PfGVNL~~~~~~~~~ 83 (418)
T cd04742 5 SFKEDYGLRYAYVAGAMARGIASAELVVAMGKAGMLGFFGAG-GLPLDEVEQAIERIQAALGNGEPYGVNLIHSPDEPEL 83 (418)
T ss_pred HHHHHhCCCccEECCcccCCCCCHHHHHHHHhCCCeeeecCC-CCCHHHHHHHHHHHHHhccCCCCeEEeeecCCCCchh
Confidence 588999999999999998679999999999999999999985 57999999999999984 7 8999999997542
Q ss_pred CHHHHHHHHhcCCcEEEEcc-CCCcHHHHHHHHhCCCE------------EEEecC------------------------
Q 020013 76 HNENIKAILSEKVAVLQVSW-GEYSEELVLEAHSAGVK------------VVPQVG------------------------ 118 (332)
Q Consensus 76 ~~~~~~~~~~~~~~~I~~~~-g~~~~~~i~~~~~~g~~------------v~~~v~------------------------ 118 (332)
..+.++.++++++++|..+. ..+++.+ ...+..|++ |+..|+
T Consensus 84 e~~~v~l~le~gV~~ve~sa~~~~~p~~-~~~r~~G~~~~~~g~~~~~~~ViakVsr~evAs~~f~ppp~~~v~~L~~~G 162 (418)
T cd04742 84 EEGLVDLFLRHGVRVVEASAFMQLTPAL-VRYRAKGLRRDADGRVQIANRIIAKVSRPEVAEAFMSPAPERILKKLLAEG 162 (418)
T ss_pred HHHHHHHHHHcCCCEEEeccccCCCcch-hhHHhcCCcccccccccccceEEEecCChhhhhhhcCCCCHHHHHHHHHcC
Confidence 24568889999999998863 2223333 355665543 777765
Q ss_pred --CHHHHHHHHHcC-CCEEEEecCCCCcccCCCCchhhhHHHHHHHhCC--------CCCcEEeecCcCCHHHHHHHHHc
Q 020013 119 --SFDEARKAVNAG-VDAIIVQGREAGGHVIGQDGLISLLPMVVDLIGD--------RDIPIIAAGGIVDARGYVAALSL 187 (332)
Q Consensus 119 --s~~~a~~a~~~g-~D~ivv~G~eaGGh~~~~~~~~~ll~~i~~~~~~--------~~iPviaaGGI~~~~~v~~al~~ 187 (332)
|+++|+.+.+.| +|.|+++ .|+|||+ +..+++.|+|.+.+.... .++||+++|||+|+++++++|++
T Consensus 163 ~it~~eA~~A~~~g~aD~Ivvq-~EAGGH~-g~~~~~~Llp~v~~l~d~v~~~~~~~~~ipViAAGGI~tg~~vaAA~al 240 (418)
T cd04742 163 KITEEQAELARRVPVADDITVE-ADSGGHT-DNRPLSVLLPTIIRLRDELAARYGYRRPIRVGAAGGIGTPEAAAAAFAL 240 (418)
T ss_pred CCCHHHHHHHHhCCCCCEEEEc-ccCCCCC-CCccHHhHHHHHHHHHHHHhhccccCCCceEEEECCCCCHHHHHHHHHc
Confidence 567777788888 6999999 8999998 555677787777653211 15999999999999999999999
Q ss_pred CcceeeeccccccCccCCCCHHHHHHHhcCCCce--EEEEecccCCCCCCceeecChH-----HHhhhc
Q 020013 188 GAQGICLGTRFVASEESYAHPEYKRKLVEMDKTE--YTDVFGRARWPGAPHRVLQTPF-----FSNWKN 249 (332)
Q Consensus 188 GA~gV~~GT~fl~t~Es~~~~~~k~~~~~~~~t~--~t~~~~~~~~~g~~~R~l~n~~-----~~~~~~ 249 (332)
||++|++||+|++|.||.+|+.||++|++++.+| +|-..+. .-.|.+.|+|+|.+ .+++-+
T Consensus 241 GAd~V~~GT~flat~Ea~~s~~~K~~L~~a~~~DT~~tp~~dm-fe~G~~vqvlk~g~~f~~ra~kl~~ 308 (418)
T cd04742 241 GADFIVTGSINQCTVEAGTSDAVKDLLQKAGVQDTAYAPAADM-FELGAKVQVLKRGTLFPARANKLYE 308 (418)
T ss_pred CCcEEeeccHHHhCccccCCHHHHHHHHhCCCCCeEEeccccc-ccCCceehhhhhcccchHHHHHHHH
Confidence 9999999999999999999999999999986555 3322211 11488999999999 666643
|
NPD is part of the nitroalkaneoxidizing enzyme family, that catalyzes oxidative denitrification of nitroalkanes to their corresponding carbonyl compounds and nitrites. NDPs are members of the NAD(P)H-dependent flavin oxidoreductase family that reduce a range of alternative electron acceptors. Most use FAD/FMN as a cofactor and NAD(P)H as electron donor. Some contain 4Fe-4S cluster to transfer electron from FAD to FMN. |
| >TIGR02814 pfaD_fam PfaD family protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.1e-40 Score=313.05 Aligned_cols=216 Identities=25% Similarity=0.367 Sum_probs=176.7
Q ss_pred cchhhcCCccceecCCCCCCCCcHHHHHHHHhCCCceeecCCCCCCHHHHHHHHHHHHhhcCC-c-EEEEeecCCCC---
Q 020013 2 GWRGMLGFEYGIVQAPLGPDISGPELVAAVANAGGLGLLRAPDWEAPDYLRDLIRKTRSLTER-P-FGVGVVLAFPH--- 76 (332)
Q Consensus 2 ~~~~~l~~~~Pii~apM~~g~s~~~la~avs~aGglG~i~~~~~~~~e~~~~~i~~~r~~~~~-p-~gvnl~~~~~~--- 76 (332)
+|+++||++||||||||+.|+++++|+++||++|++|+|+++ +.+++++++.|+++|+.++. | ||||++.+.++
T Consensus 10 ~f~~~lgiryPiiqgpMa~GiSs~eLVaAVs~AGgLG~lgag-~l~~e~l~~~I~~ir~~~~~~p~fGVNL~~~~~~~~~ 88 (444)
T TIGR02814 10 AFREDYGVRYAYVAGAMANGIASAELVIAMGRAGILGFFGAG-GLPLEEVEQAIHRIQQALPGGPAYGVNLIHSPSDPAL 88 (444)
T ss_pred HHHHHhCCCCcEECccccCCCCCHHHHHHHHhCCceeeeCCC-CCCHHHHHHHHHHHHHhcCCCCceEEEecccCCCccc
Confidence 478999999999999998679999999999999999999985 57999999999999987655 7 99999986532
Q ss_pred -HHHHHHHHhcCCcEEEEccC-CCcHHHHHHHHhCCC------------EEEEecCCHHHH-------------------
Q 020013 77 -NENIKAILSEKVAVLQVSWG-EYSEELVLEAHSAGV------------KVVPQVGSFDEA------------------- 123 (332)
Q Consensus 77 -~~~~~~~~~~~~~~I~~~~g-~~~~~~i~~~~~~g~------------~v~~~v~s~~~a------------------- 123 (332)
.+.++.+++.++++|..+.. ..++.++ ..+..|+ +|+..|++++.+
T Consensus 89 e~~~v~l~l~~~V~~veasa~~~~~p~~v-~~r~~G~~~~~~g~~~~~~~ViakVsr~~vAs~f~~p~p~~~v~~L~~~G 167 (444)
T TIGR02814 89 EWGLVDLLLRHGVRIVEASAFMQLTPALV-RYRAKGLHRDADGRVVIRNRLIAKVSRPEVAEAFMSPAPAHILQKLLAEG 167 (444)
T ss_pred HHHHHHHHHHcCCCEEEeccccCCCcchh-hhhhccccccccccccccceEEEecCCHHHHHHhcCCCcHHHHHHHHHcC
Confidence 35678888999999988733 1122232 4444443 788777655544
Q ss_pred -------HHHHHcC-CCEEEEecCCCCcccCCCCchhhhHHHHH---HHhC-----CCCCcEEeecCcCCHHHHHHHHHc
Q 020013 124 -------RKAVNAG-VDAIIVQGREAGGHVIGQDGLISLLPMVV---DLIG-----DRDIPIIAAGGIVDARGYVAALSL 187 (332)
Q Consensus 124 -------~~a~~~g-~D~ivv~G~eaGGh~~~~~~~~~ll~~i~---~~~~-----~~~iPviaaGGI~~~~~v~~al~~ 187 (332)
+.+.+.| +|.|+++ .|+|||+ +..+++.|+|++. +.+. ..++||+++|||+|+++++++|++
T Consensus 168 ~it~eEA~~a~~~g~aD~Ivve-~EAGGHt-g~~~~~~Llp~i~~lrd~v~~~~~y~~~VpViAAGGI~t~~~vaAAlaL 245 (444)
T TIGR02814 168 RITREEAELARRVPVADDICVE-ADSGGHT-DNRPLVVLLPAIIRLRDTLMRRYGYRKPIRVGAAGGIGTPEAAAAAFML 245 (444)
T ss_pred CCCHHHHHHHHhCCCCcEEEEe-ccCCCCC-CCCcHHHHHHHHHHHHHHHhhcccCCCCceEEEeCCCCCHHHHHHHHHc
Confidence 4455666 6999997 8999998 6667889999886 3331 125899999999999999999999
Q ss_pred CcceeeeccccccCccCCCCHHHHHHHhcCCCce
Q 020013 188 GAQGICLGTRFVASEESYAHPEYKRKLVEMDKTE 221 (332)
Q Consensus 188 GA~gV~~GT~fl~t~Es~~~~~~k~~~~~~~~t~ 221 (332)
|||+|++||+|++|.||++|+.||++|.+++.+|
T Consensus 246 GAdgV~~GT~flat~Esgas~~~K~~L~~a~~~D 279 (444)
T TIGR02814 246 GADFIVTGSVNQCTVEAGTSDNVKKLLAKADVQD 279 (444)
T ss_pred CCcEEEeccHHHhCccccCCHHHHHHHHhCCCcC
Confidence 9999999999999999999999999999986655
|
The protein PfaD is part of four gene locus, similar to polyketide biosynthesis systems, responsible for omega-3 polyunsaturated fatty acid biosynthesis in several high pressure and/or cold-adapted bacteria. Several other members of the seed alignment for this model are found in loci presumed to act in polyketide biosyntheses per se. |
| >cd04730 NPD_like 2-Nitropropane dioxygenase (NPD), one of the nitroalkane oxidizing enzyme families, catalyzes oxidative denitrification of nitroalkanes to their corresponding carbonyl compounds and nitrites | Back alignment and domain information |
|---|
Probab=99.97 E-value=5.3e-29 Score=224.00 Aligned_cols=221 Identities=47% Similarity=0.729 Sum_probs=191.6
Q ss_pred ccceecCCCCCCCCcHHHHHHHHhCCCceeecCCCCCCHHHHHHHHHHHHhhcCCcEEEEeecCC---CCHHHHHHHHhc
Q 020013 10 EYGIVQAPLGPDISGPELVAAVANAGGLGLLRAPDWEAPDYLRDLIRKTRSLTERPFGVGVVLAF---PHNENIKAILSE 86 (332)
Q Consensus 10 ~~Pii~apM~~g~s~~~la~avs~aGglG~i~~~~~~~~e~~~~~i~~~r~~~~~p~gvnl~~~~---~~~~~~~~~~~~ 86 (332)
++||+++||. |+++++++.+++++|++|++.. ++.+++.+.+.++++++..+.|+++|++.+. ...+.++.+.+.
T Consensus 2 ~~pi~~a~m~-g~~~~~~~~~~~~~G~ig~i~~-~~~~~~~~~~~~~~i~~~~~~~~~v~~i~~~~~~~~~~~~~~~~~~ 79 (236)
T cd04730 2 RYPIIQAPMA-GVSTPELAAAVSNAGGLGFIGA-GYLTPEALRAEIRKIRALTDKPFGVNLLVPSSNPDFEALLEVALEE 79 (236)
T ss_pred CCCEECCCCC-CCCCHHHHHHHHhCCCccccCC-CCCCHHHHHHHHHHHHHhcCCCeEEeEecCCCCcCHHHHHHHHHhC
Confidence 6899999998 7999999999999999999976 4678999988999988766678999999975 446678889999
Q ss_pred CCcEEEEccCCCcHHHHHHHHhCCCEEEEecCCHHHHHHHHHcCCCEEEEecCCCCcccCCC-CchhhhHHHHHHHhCCC
Q 020013 87 KVAVLQVSWGEYSEELVLEAHSAGVKVVPQVGSFDEARKAVNAGVDAIIVQGREAGGHVIGQ-DGLISLLPMVVDLIGDR 165 (332)
Q Consensus 87 ~~~~I~~~~g~~~~~~i~~~~~~g~~v~~~v~s~~~a~~a~~~g~D~ivv~G~eaGGh~~~~-~~~~~ll~~i~~~~~~~ 165 (332)
+++.|+++.+ ++.++++.+++.+++++..+.+.++++.+.+.|+|+|++.+...|||.... ...+.+++++++..
T Consensus 80 g~d~v~l~~~-~~~~~~~~~~~~~i~~i~~v~~~~~~~~~~~~gad~i~~~~~~~~G~~~~~~~~~~~~i~~i~~~~--- 155 (236)
T cd04730 80 GVPVVSFSFG-PPAEVVERLKAAGIKVIPTVTSVEEARKAEAAGADALVAQGAEAGGHRGTFDIGTFALVPEVRDAV--- 155 (236)
T ss_pred CCCEEEEcCC-CCHHHHHHHHHcCCEEEEeCCCHHHHHHHHHcCCCEEEEeCcCCCCCCCccccCHHHHHHHHHHHh---
Confidence 9999999866 578889999989999999999999999999999999999988888886322 24577888888876
Q ss_pred CCcEEeecCcCCHHHHHHHHHcCcceeeeccccccCccCCCCHHHHHHHhcCCCceEEEEecccCCCCCCceee
Q 020013 166 DIPIIAAGGIVDARGYVAALSLGAQGICLGTRFVASEESYAHPEYKRKLVEMDKTEYTDVFGRARWPGAPHRVL 239 (332)
Q Consensus 166 ~iPviaaGGI~~~~~v~~al~~GA~gV~~GT~fl~t~Es~~~~~~k~~~~~~~~t~~t~~~~~~~~~g~~~R~l 239 (332)
++||+++|||.+++++.+++..|||||++||+|+.+.|++.+..+|+++.++...++....++ +|+|.|++
T Consensus 156 ~~Pvi~~GGI~~~~~v~~~l~~GadgV~vgS~l~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~ 226 (236)
T cd04730 156 DIPVIAAGGIADGRGIAAALALGADGVQMGTRFLATEESGASPAYKQALLAATAEDTVLTRAF---SGRPARGL 226 (236)
T ss_pred CCCEEEECCCCCHHHHHHHHHcCCcEEEEchhhhcCcccCCCHHHHHHHHcCCCCCeEEEecc---CCCcccee
Confidence 799999999998999999999999999999999999999999999999999876553333443 58999988
|
NDP is a member of the NAD(P)H-dependent flavin oxidoreductase family that reduce a range of alternative electron acceptors. Most use FAD/FMN as a cofactor and NAD(P)H as electron donor. Some contain 4Fe-4S cluster to transfer electron from FAD to FMN. |
| >cd00381 IMPDH IMPDH: The catalytic domain of the inosine monophosphate dehydrogenase | Back alignment and domain information |
|---|
Probab=99.95 E-value=3.3e-26 Score=214.36 Aligned_cols=201 Identities=22% Similarity=0.308 Sum_probs=155.7
Q ss_pred chhhcCCccceecCCCCCCCCcHHHHHHHHhCCCceeecCCCCCCHHHHHHHHHHHHhhcCCcEEEEeecCC--CCHHHH
Q 020013 3 WRGMLGFEYGIVQAPLGPDISGPELVAAVANAGGLGLLRAPDWEAPDYLRDLIRKTRSLTERPFGVGVVLAF--PHNENI 80 (332)
Q Consensus 3 ~~~~l~~~~Pii~apM~~g~s~~~la~avs~aGglG~i~~~~~~~~e~~~~~i~~~r~~~~~p~gvnl~~~~--~~~~~~ 80 (332)
|++++++++|||++||. ++++++|+.+++++||+|+|.. + .+++++.+.++++|. ++.+|..+.. ...+.+
T Consensus 27 l~~~~~l~~Piv~apM~-~vt~~~ma~ava~~GglGvi~~-~-~~~~~~~~~i~~vk~----~l~v~~~~~~~~~~~~~~ 99 (325)
T cd00381 27 LTKNITLNIPLVSAPMD-TVTESEMAIAMARLGGIGVIHR-N-MSIEEQAEEVRKVKG----RLLVGAAVGTREDDKERA 99 (325)
T ss_pred ecCccccCCCEEecCCC-cCCcHHHHHHHHHCCCEEEEeC-C-CCHHHHHHHHHHhcc----CceEEEecCCChhHHHHH
Confidence 55678999999999998 7999999999999999999986 3 577888888888763 4555554432 335678
Q ss_pred HHHHhcCCcEEEEc--cCCC--cHHHHHHHHhCC--CEEE-EecCCHHHHHHHHHcCCCEEEEecCCCCccc-----CCC
Q 020013 81 KAILSEKVAVLQVS--WGEY--SEELVLEAHSAG--VKVV-PQVGSFDEARKAVNAGVDAIIVQGREAGGHV-----IGQ 148 (332)
Q Consensus 81 ~~~~~~~~~~I~~~--~g~~--~~~~i~~~~~~g--~~v~-~~v~s~~~a~~a~~~g~D~ivv~G~eaGGh~-----~~~ 148 (332)
+.++++++++|.++ +|.. ..+.++.+++.+ ++++ ..+.+.++++.+.++|+|+|++.+..+..+. +..
T Consensus 100 ~~l~eagv~~I~vd~~~G~~~~~~~~i~~ik~~~p~v~Vi~G~v~t~~~A~~l~~aGaD~I~vg~g~G~~~~t~~~~g~g 179 (325)
T cd00381 100 EALVEAGVDVIVIDSAHGHSVYVIEMIKFIKKKYPNVDVIAGNVVTAEAARDLIDAGADGVKVGIGPGSICTTRIVTGVG 179 (325)
T ss_pred HHHHhcCCCEEEEECCCCCcHHHHHHHHHHHHHCCCceEEECCCCCHHHHHHHHhcCCCEEEECCCCCcCcccceeCCCC
Confidence 88899999998864 3432 245677788765 7776 4889999999999999999998432111111 112
Q ss_pred CchhhhHHHHHHHhCCCCCcEEeecCcCCHHHHHHHHHcCcceeeeccccccCccCCCCHHH
Q 020013 149 DGLISLLPMVVDLIGDRDIPIIAAGGIVDARGYVAALSLGAQGICLGTRFVASEESYAHPEY 210 (332)
Q Consensus 149 ~~~~~ll~~i~~~~~~~~iPviaaGGI~~~~~v~~al~~GA~gV~~GT~fl~t~Es~~~~~~ 210 (332)
.+.+.+++.+.+.....++|||++|||.+++++.+++++||++|+|||+|+.|+||+.+-.+
T Consensus 180 ~p~~~~i~~v~~~~~~~~vpVIA~GGI~~~~di~kAla~GA~~VmiGt~fa~t~Es~g~~~~ 241 (325)
T cd00381 180 VPQATAVADVAAAARDYGVPVIADGGIRTSGDIVKALAAGADAVMLGSLLAGTDESPGEYIE 241 (325)
T ss_pred CCHHHHHHHHHHHHhhcCCcEEecCCCCCHHHHHHHHHcCCCEEEecchhcccccCCCcEEE
Confidence 35677778777766433699999999999999999999999999999999999999875433
|
IMPDH catalyzes the NAD-dependent oxidation of inosine 5'-monophosphate (IMP) to xanthosine 5' monophosphate (XMP). It is a rate-limiting step in the de novo synthesis of the guanine nucleotides. There is often a CBS domain inserted in the middle of this domain, which is proposed to play a regulatory role. IMPDH is a key enzyme in the regulation of cell proliferation and differentiation. It has been identified as an attractive target for developing chemotherapeutic agents. |
| >PRK08649 inosine 5-monophosphate dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=99.95 E-value=3.5e-26 Score=216.20 Aligned_cols=204 Identities=22% Similarity=0.317 Sum_probs=158.1
Q ss_pred hhcCCccceecCCCCCCCCcHHHHHHHHhCCCceeecCC----CCCCHHHHHHHHHH---------HHhhcCCcE-----
Q 020013 5 GMLGFEYGIVQAPLGPDISGPELVAAVANAGGLGLLRAP----DWEAPDYLRDLIRK---------TRSLTERPF----- 66 (332)
Q Consensus 5 ~~l~~~~Pii~apM~~g~s~~~la~avs~aGglG~i~~~----~~~~~e~~~~~i~~---------~r~~~~~p~----- 66 (332)
..+++++||+++||. ++++++++++++++|++|++... .+.+++.+..++.. +++++..||
T Consensus 42 ~~~~i~~Piv~a~M~-gVt~~~la~avs~~GglGvl~~~gl~~~~~~~e~l~~qi~~~~~~~~~~~~~~~~~~P~~p~l~ 120 (368)
T PRK08649 42 DAYRFEIPIIASPMD-AVVSPETAIELGKLGGLGVLNLEGLWTRYEDPEPILDEIASLGKDEATRLMQELYAEPIKPELI 120 (368)
T ss_pred cceeccCcEeccCCc-ccCCHHHHHHHHhCCCceEEeeccccccCCCHHHHHHHHHhcCcHHHHHHHHHhhcCCCCHHHH
Confidence 567899999999998 79999999999999999999842 24578887777653 355566777
Q ss_pred ----------EEEeecCC---CCHHHHHHHHhcCCcEEEEccC---------C-CcHHHHHHHHhCCCEEEE-ecCCHHH
Q 020013 67 ----------GVGVVLAF---PHNENIKAILSEKVAVLQVSWG---------E-YSEELVLEAHSAGVKVVP-QVGSFDE 122 (332)
Q Consensus 67 ----------gvnl~~~~---~~~~~~~~~~~~~~~~I~~~~g---------~-~~~~~i~~~~~~g~~v~~-~v~s~~~ 122 (332)
++|+.+.. ...+.++.+.++++|+|.+|.. . .+.++.+.+++.+++|++ .+.|.+.
T Consensus 121 ~~iv~~~~~~~V~v~vr~~~~~~~e~a~~l~eaGvd~I~vhgrt~~~~h~~~~~~~~~i~~~ik~~~ipVIaG~V~t~e~ 200 (368)
T PRK08649 121 TERIAEIRDAGVIVAVSLSPQRAQELAPTVVEAGVDLFVIQGTVVSAEHVSKEGEPLNLKEFIYELDVPVIVGGCVTYTT 200 (368)
T ss_pred HHHHHHHHhCeEEEEEecCCcCHHHHHHHHHHCCCCEEEEeccchhhhccCCcCCHHHHHHHHHHCCCCEEEeCCCCHHH
Confidence 77765421 2357788899999999999741 1 356677778888999987 8999999
Q ss_pred HHHHHHcCCCEEEEecCCCC-cccCCC-----CchhhhHHHHHHHhC-------CCCCcEEeecCcCCHHHHHHHHHcCc
Q 020013 123 ARKAVNAGVDAIIVQGREAG-GHVIGQ-----DGLISLLPMVVDLIG-------DRDIPIIAAGGIVDARGYVAALSLGA 189 (332)
Q Consensus 123 a~~a~~~g~D~ivv~G~eaG-Gh~~~~-----~~~~~ll~~i~~~~~-------~~~iPviaaGGI~~~~~v~~al~~GA 189 (332)
++++++.|||+|.+ |.+.| +|+... .+.+..+.++.+..+ ..++|||++|||.++.|++++|++||
T Consensus 201 A~~l~~aGAD~V~V-G~G~Gs~~~t~~~~g~g~p~~~ai~~~~~a~~~~l~~~~~~~vpVIAdGGI~~~~diakAlalGA 279 (368)
T PRK08649 201 ALHLMRTGAAGVLV-GIGPGAACTSRGVLGIGVPMATAIADVAAARRDYLDETGGRYVHVIADGGIGTSGDIAKAIACGA 279 (368)
T ss_pred HHHHHHcCCCEEEE-CCCCCcCCCCcccCCCCcCHHHHHHHHHHHHHHhhhhhcCCCCeEEEeCCCCCHHHHHHHHHcCC
Confidence 99999999999977 66555 454211 233444444443211 11599999999999999999999999
Q ss_pred ceeeeccccccCccCCCCHHH
Q 020013 190 QGICLGTRFVASEESYAHPEY 210 (332)
Q Consensus 190 ~gV~~GT~fl~t~Es~~~~~~ 210 (332)
|+|+|||+|+.|.||+.+-.|
T Consensus 280 d~Vm~Gs~fa~t~Espg~~~~ 300 (368)
T PRK08649 280 DAVMLGSPLARAAEAPGRGWH 300 (368)
T ss_pred CeecccchhcccccCCCcccc
Confidence 999999999999999988744
|
|
| >PRK06843 inosine 5-monophosphate dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=99.94 E-value=1.3e-25 Score=213.10 Aligned_cols=203 Identities=19% Similarity=0.323 Sum_probs=152.9
Q ss_pred cchhhcCCccceecCCCCCCCCcHHHHHHHHhCCCceeecCCCCCCHHHHHHHHHHHHhhc-CCcEEEEe----------
Q 020013 2 GWRGMLGFEYGIVQAPLGPDISGPELVAAVANAGGLGLLRAPDWEAPDYLRDLIRKTRSLT-ERPFGVGV---------- 70 (332)
Q Consensus 2 ~~~~~l~~~~Pii~apM~~g~s~~~la~avs~aGglG~i~~~~~~~~e~~~~~i~~~r~~~-~~p~gvnl---------- 70 (332)
.|++.|++++||||+||. ++++++||+++|++||+|+|.. ..++|+++++++++|+.. ..++..|.
T Consensus 34 ~lt~~l~l~iPIvsApMd-~Vt~~~lA~AvA~aGGlGvI~~--~~~~e~l~~eI~~vk~~~~~~~i~~~~d~~~~~~~~~ 110 (404)
T PRK06843 34 QLTKNISLNIPFLSSAMD-TVTESQMAIAIAKEGGIGIIHK--NMSIEAQRKEIEKVKTYKFQKTINTNGDTNEQKPEIF 110 (404)
T ss_pred hhhhccCCCCCEecCCCC-CCCCHHHHHHHHHCCCEEEecC--CCCHHHHHHHHHHHHhhcCCCceeecccccccchhhe
Confidence 367899999999999998 7999999999999999999985 368999999999988653 12233221
Q ss_pred ------------------------------------ecCC--CCHHHHHHHHhcCCcEEEEc--cCC--CcHHHHHHHHh
Q 020013 71 ------------------------------------VLAF--PHNENIKAILSEKVAVLQVS--WGE--YSEELVLEAHS 108 (332)
Q Consensus 71 ------------------------------------~~~~--~~~~~~~~~~~~~~~~I~~~--~g~--~~~~~i~~~~~ 108 (332)
-+.. ...+.++.+.++|+|+|.+. .|. ...+.++.+++
T Consensus 111 t~~~~~~~~~~~~d~~~~~~~~~a~~d~~~~l~v~aavg~~~~~~~~v~~lv~aGvDvI~iD~a~g~~~~~~~~v~~ik~ 190 (404)
T PRK06843 111 TAKQHLEKSDAYKNAEHKEDFPNACKDLNNKLRVGAAVSIDIDTIERVEELVKAHVDILVIDSAHGHSTRIIELVKKIKT 190 (404)
T ss_pred eccccchHHHHHhhhhhhhhcchhhhhhhcCeEEEEEEeCCHHHHHHHHHHHhcCCCEEEEECCCCCChhHHHHHHHHHh
Confidence 1111 11367888899999999863 232 12245666665
Q ss_pred C--CCEE-EEecCCHHHHHHHHHcCCCEEEEecCCCCcccCCC------CchhhhHHHHHHHhCCCCCcEEeecCcCCHH
Q 020013 109 A--GVKV-VPQVGSFDEARKAVNAGVDAIIVQGREAGGHVIGQ------DGLISLLPMVVDLIGDRDIPIIAAGGIVDAR 179 (332)
Q Consensus 109 ~--g~~v-~~~v~s~~~a~~a~~~g~D~ivv~G~eaGGh~~~~------~~~~~ll~~i~~~~~~~~iPviaaGGI~~~~ 179 (332)
. +..+ +..|.|.++++.+.++|+|+|.+ |.+.|+.+.+. .+.+..+..+.+.+...++|||+.|||.++.
T Consensus 191 ~~p~~~vi~g~V~T~e~a~~l~~aGaD~I~v-G~g~Gs~c~tr~~~g~g~p~ltai~~v~~~~~~~~vpVIAdGGI~~~~ 269 (404)
T PRK06843 191 KYPNLDLIAGNIVTKEAALDLISVGADCLKV-GIGPGSICTTRIVAGVGVPQITAICDVYEVCKNTNICIIADGGIRFSG 269 (404)
T ss_pred hCCCCcEEEEecCCHHHHHHHHHcCCCEEEE-CCCCCcCCcceeecCCCCChHHHHHHHHHHHhhcCCeEEEeCCCCCHH
Confidence 3 4555 56899999999999999999997 77666521111 1344555444444332379999999999999
Q ss_pred HHHHHHHcCcceeeeccccccCccCCCCH
Q 020013 180 GYVAALSLGAQGICLGTRFVASEESYAHP 208 (332)
Q Consensus 180 ~v~~al~~GA~gV~~GT~fl~t~Es~~~~ 208 (332)
++.++|++||++|+|||+|..|+||+.+-
T Consensus 270 Di~KALalGA~aVmvGs~~agt~Espg~~ 298 (404)
T PRK06843 270 DVVKAIAAGADSVMIGNLFAGTKESPSEE 298 (404)
T ss_pred HHHHHHHcCCCEEEEcceeeeeecCCCcE
Confidence 99999999999999999999999998754
|
|
| >PLN02274 inosine-5'-monophosphate dehydrogenase | Back alignment and domain information |
|---|
Probab=99.90 E-value=3.3e-22 Score=196.77 Aligned_cols=132 Identities=23% Similarity=0.367 Sum_probs=102.6
Q ss_pred HHHHHHHHhcCCcEEEEcc--CCCcH--HHHHHHHhC--CCEEE-EecCCHHHHHHHHHcCCCEEEEe---cCCCCccc-
Q 020013 77 NENIKAILSEKVAVLQVSW--GEYSE--ELVLEAHSA--GVKVV-PQVGSFDEARKAVNAGVDAIIVQ---GREAGGHV- 145 (332)
Q Consensus 77 ~~~~~~~~~~~~~~I~~~~--g~~~~--~~i~~~~~~--g~~v~-~~v~s~~~a~~a~~~g~D~ivv~---G~eaGGh~- 145 (332)
.+.++.+.++++|+|.+.. |.... +.++++++. +..++ ..|.|.++++.+.++|+|+|++. |..+.+|.
T Consensus 250 ~~r~~~l~~ag~d~i~iD~~~g~~~~~~~~i~~ik~~~p~~~vi~g~v~t~e~a~~a~~aGaD~i~vg~g~G~~~~t~~~ 329 (505)
T PLN02274 250 KERLEHLVKAGVDVVVLDSSQGDSIYQLEMIKYIKKTYPELDVIGGNVVTMYQAQNLIQAGVDGLRVGMGSGSICTTQEV 329 (505)
T ss_pred HHHHHHHHHcCCCEEEEeCCCCCcHHHHHHHHHHHHhCCCCcEEEecCCCHHHHHHHHHcCcCEEEECCCCCccccCccc
Confidence 3567788899999998742 33222 567888874 57776 47999999999999999999983 22222221
Q ss_pred ----CCCCchhhhHHHHHHHhCCCCCcEEeecCcCCHHHHHHHHHcCcceeeeccccccCccCCCCHHHH
Q 020013 146 ----IGQDGLISLLPMVVDLIGDRDIPIIAAGGIVDARGYVAALSLGAQGICLGTRFVASEESYAHPEYK 211 (332)
Q Consensus 146 ----~~~~~~~~ll~~i~~~~~~~~iPviaaGGI~~~~~v~~al~~GA~gV~~GT~fl~t~Es~~~~~~k 211 (332)
......+..++++.+.. ++|||++|||.++.++.++|++||++|+|||+|..|.||+.+..+|
T Consensus 330 ~~~g~~~~~~i~~~~~~~~~~---~vpVIadGGI~~~~di~kAla~GA~~V~vGs~~~~t~Esp~~~~~~ 396 (505)
T PLN02274 330 CAVGRGQATAVYKVASIAAQH---GVPVIADGGISNSGHIVKALTLGASTVMMGSFLAGTTEAPGEYFYQ 396 (505)
T ss_pred cccCCCcccHHHHHHHHHHhc---CCeEEEeCCCCCHHHHHHHHHcCCCEEEEchhhcccccCCcceeee
Confidence 11234566677777765 7999999999999999999999999999999999999999987665
|
|
| >TIGR01304 IMP_DH_rel_2 IMP dehydrogenase family protein | Back alignment and domain information |
|---|
Probab=99.89 E-value=1.8e-22 Score=190.44 Aligned_cols=202 Identities=20% Similarity=0.289 Sum_probs=144.1
Q ss_pred hhcCCccceecCCCCCCCCcHHHHHHHHhCCCceeecCC----CCCCHHHHHHHHHH-------------HHhhcCCcEE
Q 020013 5 GMLGFEYGIVQAPLGPDISGPELVAAVANAGGLGLLRAP----DWEAPDYLRDLIRK-------------TRSLTERPFG 67 (332)
Q Consensus 5 ~~l~~~~Pii~apM~~g~s~~~la~avs~aGglG~i~~~----~~~~~e~~~~~i~~-------------~r~~~~~p~g 67 (332)
+.+.+++||+++||+ |+++++|+..+++.|++|++... ++.+++.+..+|.. ++++...|+.
T Consensus 39 ~~~~l~~PivlAPMa-gVtd~~fr~~~~~~Galgvvsaegl~~~~~~~~~~~~QI~g~~~~~~~a~aa~~~~e~~~~~~~ 117 (369)
T TIGR01304 39 DAYRFELPFIAHPMD-ALVSPEFAIELGELGGLGVLNLEGLWGRHEDPDPAIAKIAEAYEEGDQAAATRLLQELHAAPLK 117 (369)
T ss_pred cceecCCceeecCCC-cccCHHHHHHHHHcCCcccccchHHHhcCCCHHHHHHHHhhcCCChHHHHHHHHHHHcCCCccC
Confidence 457788999999998 79999999999999999998642 12344333222222 1222222333
Q ss_pred EEe-----------------ecC-CCCHHHHHHHHhcCCcEEEEc---------cC-CCcHHHHHHHHhCCCEEEE-ecC
Q 020013 68 VGV-----------------VLA-FPHNENIKAILSEKVAVLQVS---------WG-EYSEELVLEAHSAGVKVVP-QVG 118 (332)
Q Consensus 68 vnl-----------------~~~-~~~~~~~~~~~~~~~~~I~~~---------~g-~~~~~~i~~~~~~g~~v~~-~v~ 118 (332)
.++ -.. ....+..+.+.++|+|+|.+| .+ .++.++.+.+++.+++|+. .+.
T Consensus 118 p~l~~~ii~~vr~a~VtvkiRl~~~~~~e~a~~l~eAGad~I~ihgrt~~q~~~sg~~~p~~l~~~i~~~~IPVI~G~V~ 197 (369)
T TIGR01304 118 PELLGERIAEVRDSGVITAVRVSPQNAREIAPIVVKAGADLLVIQGTLVSAEHVSTSGEPLNLKEFIGELDVPVIAGGVN 197 (369)
T ss_pred hHHHHHHHHHHHhcceEEEEecCCcCHHHHHHHHHHCCCCEEEEeccchhhhccCCCCCHHHHHHHHHHCCCCEEEeCCC
Confidence 222 111 123577889999999999986 11 2456677777888999986 789
Q ss_pred CHHHHHHHHHcCCCEEEEecCCCCcccCCC-----CchhhhHHHHHHHh----CC---CCCcEEeecCcCCHHHHHHHHH
Q 020013 119 SFDEARKAVNAGVDAIIVQGREAGGHVIGQ-----DGLISLLPMVVDLI----GD---RDIPIIAAGGIVDARGYVAALS 186 (332)
Q Consensus 119 s~~~a~~a~~~g~D~ivv~G~eaGGh~~~~-----~~~~~ll~~i~~~~----~~---~~iPviaaGGI~~~~~v~~al~ 186 (332)
+.++++++.+.|||+|+ +.+.|+|.... .+....++++..+. .+ ..+|||++|||.++.|++++|+
T Consensus 198 t~e~A~~~~~aGaDgV~--~G~gg~~~~~~~lg~~~p~~~ai~d~~~a~~~~~~e~g~r~vpVIAdGGI~tg~di~kAlA 275 (369)
T TIGR01304 198 DYTTALHLMRTGAAGVI--VGPGGANTTRLVLGIEVPMATAIADVAAARRDYLDETGGRYVHVIADGGIETSGDLVKAIA 275 (369)
T ss_pred CHHHHHHHHHcCCCEEE--ECCCCCcccccccCCCCCHHHHHHHHHHHHHHHHHhcCCCCceEEEeCCCCCHHHHHHHHH
Confidence 99999999999999998 44445554211 23444555554321 11 1499999999999999999999
Q ss_pred cCcceeeeccccccCccCCCCHH
Q 020013 187 LGAQGICLGTRFVASEESYAHPE 209 (332)
Q Consensus 187 ~GA~gV~~GT~fl~t~Es~~~~~ 209 (332)
+|||+|+|||+|+.+.||+..-.
T Consensus 276 lGAdaV~iGt~~a~a~Eapg~~~ 298 (369)
T TIGR01304 276 CGADAVVLGSPLARAAEAPGRGY 298 (369)
T ss_pred cCCCEeeeHHHHHhhhcCCCCCC
Confidence 99999999999999999987643
|
This model represents a family of proteins, often annotated as a putative IMP dehydrogenase, related to IMP dehydrogenase and GMP reductase. Most species with a member of this family belong to the high GC Gram-positive bacteria, and these also have the IMP dehydrogenase described by TIGRFAMs equivalog model TIGR01302. |
| >PTZ00314 inosine-5'-monophosphate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.87 E-value=5.9e-21 Score=187.86 Aligned_cols=205 Identities=25% Similarity=0.413 Sum_probs=151.1
Q ss_pred chhhcCCccceecCCCCCCCCcHHHHHHHHhCCCceeecCCCCCCHHHHHHHHHHHHhhcC-------------------
Q 020013 3 WRGMLGFEYGIVQAPLGPDISGPELVAAVANAGGLGLLRAPDWEAPDYLRDLIRKTRSLTE------------------- 63 (332)
Q Consensus 3 ~~~~l~~~~Pii~apM~~g~s~~~la~avs~aGglG~i~~~~~~~~e~~~~~i~~~r~~~~------------------- 63 (332)
+++.+++++|||++||. ++++++||.+++++||+|+|.. .+++|...++++++++.-+
T Consensus 43 l~~~~~l~~Pii~a~M~-~vt~~~ma~a~a~~GglGvi~~--~~~~e~~~~~v~kvk~~e~g~i~dpvtv~pd~tv~eA~ 119 (495)
T PTZ00314 43 LTRNIRLKIPIVSSPMD-TVTEHKMAIAMALMGGIGVIHN--NCSIEEQVEEVRKVKRFENGFIMDPYVLSPNHTVADVL 119 (495)
T ss_pred ccCCcccCCceeecCcc-ccccHHHHHHHHHCCCeEEecC--CCCHHHHHHHHhhccccccccccCCeecCCCCCHHHHH
Confidence 56889999999999998 7999999999999999999964 4688887777777764200
Q ss_pred ---------------------CcEEE------------------------Eeec-------------------------C
Q 020013 64 ---------------------RPFGV------------------------GVVL-------------------------A 73 (332)
Q Consensus 64 ---------------------~p~gv------------------------nl~~-------------------------~ 73 (332)
+.+|+ ++.. +
T Consensus 120 ~lm~~~~~s~vpVvd~~~~~gkLvGIVt~~DL~~~~~~~~~V~diMt~~~~lvtv~~~~sl~eAl~lm~e~~i~~LPVVd 199 (495)
T PTZ00314 120 EIKEKKGFSSILITVDGKVGGKLLGIVTSRDIDFVKDKSTPVSEVMTPREKLVVGNTPISLEEANEVLRESRKGKLPIVN 199 (495)
T ss_pred HHHHHcCCcEEEEEeCCccCCeEEEEEEHHHHhhcccCCCCHHHhhCCcCCceEeCCCCCHHHHHHHHHHcCCCeEEEEc
Confidence 00000 0000 0
Q ss_pred -------------------CC---------------------CHHHHHHHHhcCCcEEEEcc--CCCc--HHHHHHHHhC
Q 020013 74 -------------------FP---------------------HNENIKAILSEKVAVLQVSW--GEYS--EELVLEAHSA 109 (332)
Q Consensus 74 -------------------~~---------------------~~~~~~~~~~~~~~~I~~~~--g~~~--~~~i~~~~~~ 109 (332)
.+ ..+.++.+.+.++++|.+.. |... .+.++.+++.
T Consensus 200 ~~g~liGIIT~~DIl~~~~~p~a~~D~~GrL~Vgaavg~~~~~~~~~~~l~~ag~d~i~id~a~G~s~~~~~~i~~ik~~ 279 (495)
T PTZ00314 200 DNGELVALVSRSDLKKNRGYPNASLDSNGQLLVGAAISTRPEDIERAAALIEAGVDVLVVDSSQGNSIYQIDMIKKLKSN 279 (495)
T ss_pred CCCcEEEEEEehHhhhcccCchhhhccCCCEEEEEEECCCHHHHHHHHHHHHCCCCEEEEecCCCCchHHHHHHHHHHhh
Confidence 00 02456677888999998643 3322 2567777765
Q ss_pred --CCEEEE-ecCCHHHHHHHHHcCCCEEEEecCCCCcccCCC------CchhhhHHHHHHHhCCCCCcEEeecCcCCHHH
Q 020013 110 --GVKVVP-QVGSFDEARKAVNAGVDAIIVQGREAGGHVIGQ------DGLISLLPMVVDLIGDRDIPIIAAGGIVDARG 180 (332)
Q Consensus 110 --g~~v~~-~v~s~~~a~~a~~~g~D~ivv~G~eaGGh~~~~------~~~~~ll~~i~~~~~~~~iPviaaGGI~~~~~ 180 (332)
+++++. .+.|.++++.+.++|+|+|.+ |...|+++... .+.+..+.++.+..+..++|||++|||.++.+
T Consensus 280 ~~~~~v~aG~V~t~~~a~~~~~aGad~I~v-g~g~Gs~~~t~~~~~~g~p~~~ai~~~~~~~~~~~v~vIadGGi~~~~d 358 (495)
T PTZ00314 280 YPHVDIIAGNVVTADQAKNLIDAGADGLRI-GMGSGSICITQEVCAVGRPQASAVYHVARYARERGVPCIADGGIKNSGD 358 (495)
T ss_pred CCCceEEECCcCCHHHHHHHHHcCCCEEEE-CCcCCcccccchhccCCCChHHHHHHHHHHHhhcCCeEEecCCCCCHHH
Confidence 567765 788999999999999999988 44444433111 24456666666655434799999999999999
Q ss_pred HHHHHHcCcceeeeccccccCccCCCCHHHH
Q 020013 181 YVAALSLGAQGICLGTRFVASEESYAHPEYK 211 (332)
Q Consensus 181 v~~al~~GA~gV~~GT~fl~t~Es~~~~~~k 211 (332)
+.+|+++||++|+|||.|..|.||+....||
T Consensus 359 i~kAla~GA~~Vm~G~~~a~~~e~~~~~~~~ 389 (495)
T PTZ00314 359 ICKALALGADCVMLGSLLAGTEEAPGEYFFK 389 (495)
T ss_pred HHHHHHcCCCEEEECchhccccccCCceeee
Confidence 9999999999999999999999998877665
|
|
| >cd02809 alpha_hydroxyacid_oxid_FMN Family of homologous FMN-dependent alpha-hydroxyacid oxidizing enzymes | Back alignment and domain information |
|---|
Probab=99.87 E-value=1.3e-20 Score=175.33 Aligned_cols=189 Identities=21% Similarity=0.253 Sum_probs=145.5
Q ss_pred hhhcCC--ccceecCCCCCCCC------cHHHHHHHHhCCCceeecCCCCCCHHHHHHHHHHHHhhcCCcEEEEeecCCC
Q 020013 4 RGMLGF--EYGIVQAPLGPDIS------GPELVAAVANAGGLGLLRAPDWEAPDYLRDLIRKTRSLTERPFGVGVVLAFP 75 (332)
Q Consensus 4 ~~~l~~--~~Pii~apM~~g~s------~~~la~avs~aGglG~i~~~~~~~~e~~~~~i~~~r~~~~~p~gvnl~~~~~ 75 (332)
+++||. ++||+.+||+ +.+ +..++.+++++|..+.++.....+++.++ +..+.|+.+|++....
T Consensus 56 ~~~lg~~~~~Pi~iapm~-g~~~~~~~~~~~la~aa~~~g~~~~~~~~~~~~~~~i~-------~~~~~~~~~ql~~~~~ 127 (299)
T cd02809 56 TTLLGQKLAMPFGIAPTG-LQGLAHPDGELATARAAAAAGIPFTLSTVSTTSLEEVA-------AAAPGPRWFQLYVPRD 127 (299)
T ss_pred eEECCeecCCCeeeCccc-ccccCCchHHHHHHHHHHHcCCCEEecCCCcCCHHHHH-------HhcCCCeEEEEeecCC
Confidence 356675 5899999997 454 56899999999988888763334444433 2234799999987532
Q ss_pred C---HHHHHHHHhcCCcEEEEccCCCc------HHHHHHHHhC-CCEEEEe-cCCHHHHHHHHHcCCCEEEEecCCCCcc
Q 020013 76 H---NENIKAILSEKVAVLQVSWGEYS------EELVLEAHSA-GVKVVPQ-VGSFDEARKAVNAGVDAIIVQGREAGGH 144 (332)
Q Consensus 76 ~---~~~~~~~~~~~~~~I~~~~g~~~------~~~i~~~~~~-g~~v~~~-v~s~~~a~~a~~~g~D~ivv~G~eaGGh 144 (332)
. .+.++.+.+.++++|.++.+++. .+.++.+++. +++++.+ +.++++++.+++.|+|+|++.|. ||+
T Consensus 128 ~~~~~~~i~~~~~~g~~~i~l~~~~p~~~~~~~~~~i~~l~~~~~~pvivK~v~s~~~a~~a~~~G~d~I~v~~~--gG~ 205 (299)
T cd02809 128 REITEDLLRRAEAAGYKALVLTVDTPVLGRRLTWDDLAWLRSQWKGPLILKGILTPEDALRAVDAGADGIVVSNH--GGR 205 (299)
T ss_pred HHHHHHHHHHHHHcCCCEEEEecCCCCCCCCCCHHHHHHHHHhcCCCEEEeecCCHHHHHHHHHCCCCEEEEcCC--CCC
Confidence 1 33456667789999999988754 3678888875 6776644 78999999999999999999875 455
Q ss_pred cC-CCCchhhhHHHHHHHhCCCCCcEEeecCcCCHHHHHHHHHcCcceeeeccccccCcc
Q 020013 145 VI-GQDGLISLLPMVVDLIGDRDIPIIAAGGIVDARGYVAALSLGAQGICLGTRFVASEE 203 (332)
Q Consensus 145 ~~-~~~~~~~ll~~i~~~~~~~~iPviaaGGI~~~~~v~~al~~GA~gV~~GT~fl~t~E 203 (332)
.. +..+++.+++++++.+.. ++|||++|||.++.++.+++++|||+|++|++|+....
T Consensus 206 ~~~~g~~~~~~l~~i~~~~~~-~ipvia~GGI~~~~d~~kal~lGAd~V~ig~~~l~~~~ 264 (299)
T cd02809 206 QLDGAPATIDALPEIVAAVGG-RIEVLLDGGIRRGTDVLKALALGADAVLIGRPFLYGLA 264 (299)
T ss_pred CCCCCcCHHHHHHHHHHHhcC-CCeEEEeCCCCCHHHHHHHHHcCCCEEEEcHHHHHHHH
Confidence 42 234678999999887732 59999999999999999999999999999999997643
|
This family occurs in both prokaryotes and eukaryotes. Members of this family include flavocytochrome b2 (FCB2), glycolate oxidase (GOX), lactate monooxygenase (LMO), mandelate dehydrogenase (MDH), and long chain hydroxyacid oxidase (LCHAO). In green plants, glycolate oxidase is one of the key enzymes in photorespiration where it oxidizes glycolate to glyoxylate. LMO catalyzes the oxidation of L-lactate to acetate and carbon dioxide. MDH oxidizes (S)-mandelate to phenylglyoxalate. It is an enzyme in the mandelate pathway that occurs in several strains of Pseudomonas which converts (R)-mandelate to benzoate. |
| >PF00478 IMPDH: IMP dehydrogenase / GMP reductase domain; InterPro: IPR001093 Synonym(s): Inosine-5'-monophosphate dehydrogenase, Inosinic acid dehydrogenase; Synonym(s): Guanosine 5'-monophosphate oxidoreductase This entry contains two related enzymes IMP dehydrogenase and GMP reducatase | Back alignment and domain information |
|---|
Probab=99.85 E-value=3.4e-19 Score=166.35 Aligned_cols=198 Identities=25% Similarity=0.393 Sum_probs=146.6
Q ss_pred hhhcCCccceecCCCCCCCCcHHHHHHHHhCCCceeecCCCCCCHHHHHHHHHHHHhhc---------CCcEEEEeecCC
Q 020013 4 RGMLGFEYGIVQAPLGPDISGPELVAAVANAGGLGLLRAPDWEAPDYLRDLIRKTRSLT---------ERPFGVGVVLAF 74 (332)
Q Consensus 4 ~~~l~~~~Pii~apM~~g~s~~~la~avs~aGglG~i~~~~~~~~e~~~~~i~~~r~~~---------~~p~gvnl~~~~ 74 (332)
++.+.++.|||.+||. .++++++|.++++.||+|+|.. + .+.++..+.++++++.. ...+++-+-...
T Consensus 31 ~~~~~l~iPivsa~MD-tVte~~mAiama~~Gglgvih~-~-~~~e~q~~~v~~vK~~~~~a~~d~~~~l~V~aavg~~~ 107 (352)
T PF00478_consen 31 TRNITLKIPIVSAPMD-TVTESEMAIAMARLGGLGVIHR-N-MSIEEQAEEVKKVKRYYPNASKDEKGRLLVAAAVGTRD 107 (352)
T ss_dssp STSEEESSSEEE-SST-TTSSHHHHHHHHHTTSEEEEES-S-SCHHHHHHHHHHHHTHHTTHHBHTTSCBCEEEEEESST
T ss_pred cCCEeecCceEecCcc-ccchHHHHHHHHHhcCCceecC-C-CCHHHHHHHHhhhccccccccccccccceEEEEecCCH
Confidence 3566788999999998 7999999999999999999987 3 57777778888887531 234555555554
Q ss_pred CCHHHHHHHHhcCCcEEEEc--cCCCcH---HHHHHHHhC--CCEEE-EecCCHHHHHHHHHcCCCEEEEecCCCCcccC
Q 020013 75 PHNENIKAILSEKVAVLQVS--WGEYSE---ELVLEAHSA--GVKVV-PQVGSFDEARKAVNAGVDAIIVQGREAGGHVI 146 (332)
Q Consensus 75 ~~~~~~~~~~~~~~~~I~~~--~g~~~~---~~i~~~~~~--g~~v~-~~v~s~~~a~~a~~~g~D~ivv~G~eaGGh~~ 146 (332)
.+.+.++.+.++++|+|.+. .|. .. +.++.+++. .++|+ ..|.|.+.++...++|+|+|.+ |...|..+.
T Consensus 108 ~~~er~~~L~~agvD~ivID~a~g~-s~~~~~~ik~ik~~~~~~~viaGNV~T~e~a~~L~~aGad~vkV-GiGpGsiCt 185 (352)
T PF00478_consen 108 DDFERAEALVEAGVDVIVIDSAHGH-SEHVIDMIKKIKKKFPDVPVIAGNVVTYEGAKDLIDAGADAVKV-GIGPGSICT 185 (352)
T ss_dssp CHHHHHHHHHHTT-SEEEEE-SSTT-SHHHHHHHHHHHHHSTTSEEEEEEE-SHHHHHHHHHTT-SEEEE-SSSSSTTBH
T ss_pred HHHHHHHHHHHcCCCEEEccccCcc-HHHHHHHHHHHHHhCCCceEEecccCCHHHHHHHHHcCCCEEEE-eccCCcccc
Confidence 45678888999999999873 343 44 344555543 36666 5789999999999999999998 443333221
Q ss_pred -----C-CCchhhhHHHHHHHhCCCCCcEEeecCcCCHHHHHHHHHcCcceeeeccccccCccCCC
Q 020013 147 -----G-QDGLISLLPMVVDLIGDRDIPIIAAGGIVDARGYVAALSLGAQGICLGTRFVASEESYA 206 (332)
Q Consensus 147 -----~-~~~~~~ll~~i~~~~~~~~iPviaaGGI~~~~~v~~al~~GA~gV~~GT~fl~t~Es~~ 206 (332)
+ ..+.+..+.++.++....++|||+.|||.++.|+.+||++|||.|+||+.|..|.|||.
T Consensus 186 Tr~v~GvG~PQ~tAv~~~a~~a~~~~v~iIADGGi~~sGDi~KAla~GAd~VMlG~llAgt~EsPG 251 (352)
T PF00478_consen 186 TREVTGVGVPQLTAVYECAEAARDYGVPIIADGGIRTSGDIVKALAAGADAVMLGSLLAGTDESPG 251 (352)
T ss_dssp HHHHHSBSCTHHHHHHHHHHHHHCTTSEEEEESS-SSHHHHHHHHHTT-SEEEESTTTTTBTTSSS
T ss_pred cccccccCCcHHHHHHHHHHHhhhccCceeecCCcCcccceeeeeeecccceeechhhccCcCCCC
Confidence 0 13456677777776654579999999999999999999999999999999999999865
|
These enzymes adopt a TIM barrel structure. IMP dehydrogenase (1.1.1.205 from EC) (IMPDH) catalyzes the rate-limiting reaction of de novo GTP biosynthesis, the NAD-dependent reduction of IMP into XMP []. |
| >cd02808 GltS_FMN Glutamate synthase (GltS) FMN-binding domain | Back alignment and domain information |
|---|
Probab=99.84 E-value=2.4e-20 Score=179.13 Aligned_cols=202 Identities=16% Similarity=0.109 Sum_probs=149.0
Q ss_pred chhhcCCccceecCCCCCCCCc----HHHHHHHHhCCCceeecCCCCCCHHHHHHHHHHHHhhcCCcEEEEeecCCC---
Q 020013 3 WRGMLGFEYGIVQAPLGPDISG----PELVAAVANAGGLGLLRAPDWEAPDYLRDLIRKTRSLTERPFGVGVVLAFP--- 75 (332)
Q Consensus 3 ~~~~l~~~~Pii~apM~~g~s~----~~la~avs~aGglG~i~~~~~~~~e~~~~~i~~~r~~~~~p~gvnl~~~~~--- 75 (332)
+++.+++++||+++||++|..+ ++|+++++++|+++.++.+ ..++++++..+..+++.++.|||||......
T Consensus 70 ~~~~~~i~~Pi~~~~Ms~Gs~s~~a~~aLa~aa~~aG~~~~~Geg-g~~~~~~~~~~~~i~q~~~~~fGv~~~~~~~~~~ 148 (392)
T cd02808 70 AEKPLKLDSPFNISAMSFGALSKEAKEALAIGAALAGTASNTGEG-GELPEEREGGGDIIKQVASGRFGVRPEYLNKADA 148 (392)
T ss_pred cCCccccccceEecCCCCCcccHHHHHHHHHHHHhcCCceeecCC-CCCHHHHhhhhheEEEecCCCCccCHHHcccCcE
Confidence 4678899999999999866543 7999999999999999985 5799999999999999999999998643211
Q ss_pred -------------------CHHHHHHHHhcC----CcEEEEc----cCC--CcHHHHHHHHhC-C-CEEEEecC---CHH
Q 020013 76 -------------------HNENIKAILSEK----VAVLQVS----WGE--YSEELVLEAHSA-G-VKVVPQVG---SFD 121 (332)
Q Consensus 76 -------------------~~~~~~~~~~~~----~~~I~~~----~g~--~~~~~i~~~~~~-g-~~v~~~v~---s~~ 121 (332)
.+-..+++...+ .++++-. +.. ...++++.+++. + .+|+.+.. +.+
T Consensus 149 ieik~~QGAkpg~gg~l~~~Kv~~eiA~~r~~~~g~~~isp~~~~~~~~~~~l~~~I~~lr~~~~~~pV~vK~~~~~~~~ 228 (392)
T cd02808 149 IEIKIGQGAKPGEGGHLPGEKVTEEIAKIRGIPPGVDLISPPPHHDIYSIEDLAQLIEDLREATGGKPIGVKLVAGHGEG 228 (392)
T ss_pred EEEEeccCCCCCCCCccccccCCHHHHHHhCCCCCccccCCCCCCCCCCHHHHHHHHHHHHHhCCCceEEEEECCCCCHH
Confidence 011233333333 3444321 111 014567788875 3 67765543 466
Q ss_pred HHHHHHHcC-CCEEEEecCCCCcccCC-------CCchhhhHHHHHHHhCC----CCCcEEeecCcCCHHHHHHHHHcCc
Q 020013 122 EARKAVNAG-VDAIIVQGREAGGHVIG-------QDGLISLLPMVVDLIGD----RDIPIIAAGGIVDARGYVAALSLGA 189 (332)
Q Consensus 122 ~a~~a~~~g-~D~ivv~G~eaGGh~~~-------~~~~~~ll~~i~~~~~~----~~iPviaaGGI~~~~~v~~al~~GA 189 (332)
++..+.+.+ +|+|+++|.++|+|... ..++...++++.+.+.. .++|||++|||.++.|+.++|++||
T Consensus 229 ~~a~~~~~~g~D~I~VsG~~Ggtg~~~~~~~~~~g~pt~~~L~~v~~~~~~~~~~~~i~viasGGI~~g~Dv~kalaLGA 308 (392)
T cd02808 229 DIAAGVAAAGADFITIDGAEGGTGAAPLTFIDHVGLPTELGLARAHQALVKNGLRDRVSLIASGGLRTGADVAKALALGA 308 (392)
T ss_pred HHHHHHHHcCCCEEEEeCCCCCCCCCcccccccCCccHHHHHHHHHHHHHHcCCCCCCeEEEECCCCCHHHHHHHHHcCC
Confidence 666666555 99999999988776421 13566778888776531 2699999999999999999999999
Q ss_pred ceeeeccccccCccCC
Q 020013 190 QGICLGTRFVASEESY 205 (332)
Q Consensus 190 ~gV~~GT~fl~t~Es~ 205 (332)
|+|.+||+||.+.+|.
T Consensus 309 d~V~ig~~~l~al~c~ 324 (392)
T cd02808 309 DAVGIGTAALIALGCI 324 (392)
T ss_pred CeeeechHHHHhcchH
Confidence 9999999999998874
|
GltS is a complex iron-sulfur flavoprotein that catalyzes the reductive synthesis of L-glutamate from 2-oxoglutarate and L-glutamine via intramolecular channelling of ammonia, a reaction in the plant, yeast and bacterial pathway for ammonia assimilation. It is a multifunctional enzyme that functions through three distinct active centers, carrying out L-glutamine hydrolysis, conversion of 2-oxoglutarate into L-glutamate, and electron uptake from an electron donor. |
| >PRK05437 isopentenyl pyrophosphate isomerase; Provisional | Back alignment and domain information |
|---|
Probab=99.84 E-value=9.1e-20 Score=172.61 Aligned_cols=186 Identities=26% Similarity=0.312 Sum_probs=142.2
Q ss_pred CccceecCCCCCCCCc------HHHHHHHHhCC---CceeecCCCCCCHHHHHHHHHHHHhhc-CCcEEEEeecCCC---
Q 020013 9 FEYGIVQAPLGPDISG------PELVAAVANAG---GLGLLRAPDWEAPDYLRDLIRKTRSLT-ERPFGVGVVLAFP--- 75 (332)
Q Consensus 9 ~~~Pii~apM~~g~s~------~~la~avs~aG---glG~i~~~~~~~~e~~~~~i~~~r~~~-~~p~gvnl~~~~~--- 75 (332)
+++||+++||++ .++ ++|+.+++++| ++|..... +.+|+ +++.++.+|+.+ +.|+.+|++.+..
T Consensus 59 l~~Pi~i~~MtG-gs~~~~~in~~La~~a~~~G~~~~~Gs~~~~-~~~~~-~~~~~~~vr~~~p~~p~~aNl~~~~~~~~ 135 (352)
T PRK05437 59 LSAPFLINAMTG-GSEKAKEINRKLAEAAEELGIAMGVGSQRAA-LKDPE-LADSFSVVRKVAPDGLLFANLGAVQLYGY 135 (352)
T ss_pred ecCCEEecccCC-CChhHHHHHHHHHHHHHHcCCCeEecccHhh-ccChh-hHHHHHHHHHHCCCceEEeecCccccCCC
Confidence 789999999995 565 99999999999 88888764 66787 888999999886 8999999998654
Q ss_pred -CHHHHHHHHhcCCcEEEEccCCC-----------cH---HHHHHHHhC-CCEEEEe-c---CCHHHHHHHHHcCCCEEE
Q 020013 76 -HNENIKAILSEKVAVLQVSWGEY-----------SE---ELVLEAHSA-GVKVVPQ-V---GSFDEARKAVNAGVDAII 135 (332)
Q Consensus 76 -~~~~~~~~~~~~~~~I~~~~g~~-----------~~---~~i~~~~~~-g~~v~~~-v---~s~~~a~~a~~~g~D~iv 135 (332)
.++..+.+...+++++.+|.+.. .. +.++.+++. +++|+.+ + .+.++++.+.+.|+|+|+
T Consensus 136 ~~~~~~~~~~~~~adal~l~l~~~qe~~~p~g~~~f~~~le~i~~i~~~~~vPVivK~~g~g~s~~~a~~l~~~Gvd~I~ 215 (352)
T PRK05437 136 GVEEAQRAVEMIEADALQIHLNPLQELVQPEGDRDFRGWLDNIAEIVSALPVPVIVKEVGFGISKETAKRLADAGVKAID 215 (352)
T ss_pred CHHHHHHHHHhcCCCcEEEeCccchhhcCCCCcccHHHHHHHHHHHHHhhCCCEEEEeCCCCCcHHHHHHHHHcCCCEEE
Confidence 13333444446889888875321 11 334555554 7887765 3 488999999999999999
Q ss_pred EecCCCCc--------ccCC-----------CCchhhhHHHHHHHhCCCCCcEEeecCcCCHHHHHHHHHcCcceeeecc
Q 020013 136 VQGREAGG--------HVIG-----------QDGLISLLPMVVDLIGDRDIPIIAAGGIVDARGYVAALSLGAQGICLGT 196 (332)
Q Consensus 136 v~G~eaGG--------h~~~-----------~~~~~~ll~~i~~~~~~~~iPviaaGGI~~~~~v~~al~~GA~gV~~GT 196 (332)
++|. || |... ..++...++++++... ++|||++|||.++.|+.+++++|||+|++|+
T Consensus 216 Vsg~--GGt~~~~ie~~R~~~~~~~~~~~~~g~pt~~~l~~i~~~~~--~ipvia~GGI~~~~dv~k~l~~GAd~v~ig~ 291 (352)
T PRK05437 216 VAGA--GGTSWAAIENYRARDDRLASYFADWGIPTAQSLLEARSLLP--DLPIIASGGIRNGLDIAKALALGADAVGMAG 291 (352)
T ss_pred ECCC--CCCCccchhhhhhhccccccccccccCCHHHHHHHHHHhcC--CCeEEEECCCCCHHHHHHHHHcCCCEEEEhH
Confidence 9886 44 2210 1235567777777632 7999999999999999999999999999999
Q ss_pred ccccC
Q 020013 197 RFVAS 201 (332)
Q Consensus 197 ~fl~t 201 (332)
.|+..
T Consensus 292 ~~l~~ 296 (352)
T PRK05437 292 PFLKA 296 (352)
T ss_pred HHHHH
Confidence 99976
|
|
| >cd02811 IDI-2_FMN Isopentenyl-diphosphate:dimethylallyl diphosphate isomerase type 2 (IDI-2) FMN-binding domain | Back alignment and domain information |
|---|
Probab=99.84 E-value=1.2e-19 Score=170.30 Aligned_cols=191 Identities=25% Similarity=0.290 Sum_probs=141.6
Q ss_pred hcC--CccceecCCCCCCCC------cHHHHHHHHhCC---CceeecCCCCCCHHHHHHHHHHHHhhcC-CcEEEEeecC
Q 020013 6 MLG--FEYGIVQAPLGPDIS------GPELVAAVANAG---GLGLLRAPDWEAPDYLRDLIRKTRSLTE-RPFGVGVVLA 73 (332)
Q Consensus 6 ~l~--~~~Pii~apM~~g~s------~~~la~avs~aG---glG~i~~~~~~~~e~~~~~i~~~r~~~~-~p~gvnl~~~ 73 (332)
++| +++||+++||++ .+ +++|+.+++++| ++|....+ +.+++.. +.++.+|+.++ .||.+|+.+.
T Consensus 46 ~~G~~l~~Pi~ia~mtG-g~~~~~~in~~La~~a~~~g~~~~~Gs~~~~-~~~~e~~-~~~~~vr~~~~~~p~~~Nl~~~ 122 (326)
T cd02811 46 FLGKRLSAPLLISAMTG-GSEKAKEINRNLAEAAEELGIAMGVGSQRAA-LEDPELA-ESFTVVREAPPNGPLIANLGAV 122 (326)
T ss_pred ECCceecCCEEEeCCCC-CChHHHHHHHHHHHHHHHcCCCeEecCchhh-ccChhhh-hHHHHHHHhCCCceEEeecCcc
Confidence 455 789999999994 56 799999999999 78877653 6678755 78888888865 9999999886
Q ss_pred CC---CHH-HHHHHHhcCCcEEEEccCC-----------CcH---HHHHHHHhC-CCEEEEec----CCHHHHHHHHHcC
Q 020013 74 FP---HNE-NIKAILSEKVAVLQVSWGE-----------YSE---ELVLEAHSA-GVKVVPQV----GSFDEARKAVNAG 130 (332)
Q Consensus 74 ~~---~~~-~~~~~~~~~~~~I~~~~g~-----------~~~---~~i~~~~~~-g~~v~~~v----~s~~~a~~a~~~g 130 (332)
.. ..+ ..+.+...+++++.+|.+. ... +.++.+++. .++|+.+. .+.++++.+.+.|
T Consensus 123 ~~~~~~~~~~~~~i~~~~adalel~l~~~q~~~~~~~~~df~~~~~~i~~l~~~~~vPVivK~~g~g~s~~~a~~l~~~G 202 (326)
T cd02811 123 QLNGYGVEEARRAVEMIEADALAIHLNPLQEAVQPEGDRDFRGWLERIEELVKALSVPVIVKEVGFGISRETAKRLADAG 202 (326)
T ss_pred ccCCCCHHHHHHHHHhcCCCcEEEeCcchHhhcCCCCCcCHHHHHHHHHHHHHhcCCCEEEEecCCCCCHHHHHHHHHcC
Confidence 52 223 3333344688998887532 111 234445543 77877654 5889999999999
Q ss_pred CCEEEEecCCCCc--------ccCC-------------CCchhhhHHHHHHHhCCCCCcEEeecCcCCHHHHHHHHHcCc
Q 020013 131 VDAIIVQGREAGG--------HVIG-------------QDGLISLLPMVVDLIGDRDIPIIAAGGIVDARGYVAALSLGA 189 (332)
Q Consensus 131 ~D~ivv~G~eaGG--------h~~~-------------~~~~~~ll~~i~~~~~~~~iPviaaGGI~~~~~v~~al~~GA 189 (332)
+|+|+++|. || |... ..++...++++++.+. ++|||++|||.++.++.+++++||
T Consensus 203 vd~I~vsG~--GGt~~~~ie~~r~~~~~~~~~~~~~~~g~~t~~~l~~~~~~~~--~ipIiasGGIr~~~dv~kal~lGA 278 (326)
T cd02811 203 VKAIDVAGA--GGTSWARVENYRAKDSDQRLAEYFADWGIPTAASLLEVRSALP--DLPLIASGGIRNGLDIAKALALGA 278 (326)
T ss_pred CCEEEECCC--CCCcccccccccccccccccccccccccccHHHHHHHHHHHcC--CCcEEEECCCCCHHHHHHHHHhCC
Confidence 999999886 44 2210 1133456667766553 699999999999999999999999
Q ss_pred ceeeeccccccCcc
Q 020013 190 QGICLGTRFVASEE 203 (332)
Q Consensus 190 ~gV~~GT~fl~t~E 203 (332)
|+|++|+.|+..--
T Consensus 279 d~V~i~~~~L~~~~ 292 (326)
T cd02811 279 DLVGMAGPFLKAAL 292 (326)
T ss_pred CEEEEcHHHHHHHh
Confidence 99999999886653
|
Two types of IDIs have been characterized at present. The long known IDI-1 is only dependent on divalent metals for activity, whereas IDI-2 requires a metal, FMN and NADPH. IDI-2 catalyzes the interconversion of isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP) in the mevalonate pathway. |
| >TIGR01305 GMP_reduct_1 guanosine monophosphate reductase, eukaryotic | Back alignment and domain information |
|---|
Probab=99.81 E-value=3.8e-18 Score=156.64 Aligned_cols=195 Identities=18% Similarity=0.149 Sum_probs=148.0
Q ss_pred cCCccceecCCCCCCCCcHHHHHHHHhCCCceeecCCCCCCHHHHHHHHHHHHhhcCCcEEEEeecCCCCHHHHHHHHhc
Q 020013 7 LGFEYGIVQAPLGPDISGPELVAAVANAGGLGLLRAPDWEAPDYLRDLIRKTRSLTERPFGVGVVLAFPHNENIKAILSE 86 (332)
Q Consensus 7 l~~~~Pii~apM~~g~s~~~la~avs~aGglG~i~~~~~~~~e~~~~~i~~~r~~~~~p~gvnl~~~~~~~~~~~~~~~~ 86 (332)
+-++.|||.+.|. .+++.++|.++++.|+++++.- ..++|+..+.+++.+.-......+.+-+...+.+.++.++++
T Consensus 42 ~~~~iPii~AnMd-tv~~~~mA~~la~~g~~~~iHk--~~~~e~~~~~v~~~~~~~~~~~~vsvG~~~~d~er~~~L~~a 118 (343)
T TIGR01305 42 TYSGVPIIAANMD-TVGTFEMAAALSQHSIFTAIHK--HYSVDEWKAFATNSSPDCLQNVAVSSGSSDNDLEKMTSILEA 118 (343)
T ss_pred eeeCCceEecCCC-cccCHHHHHHHHHCCCeEEEee--CCCHHHHHHHHHhhcccccceEEEEeccCHHHHHHHHHHHhc
Confidence 3467899999998 7999999999999999999986 358887777776654322222333333333446778888887
Q ss_pred C--CcEEEEc--cCCCcH---HHHHHHHhC--CCEEEEe-cCCHHHHHHHHHcCCCEEEEe-cCCCCcccCC------CC
Q 020013 87 K--VAVLQVS--WGEYSE---ELVLEAHSA--GVKVVPQ-VGSFDEARKAVNAGVDAIIVQ-GREAGGHVIG------QD 149 (332)
Q Consensus 87 ~--~~~I~~~--~g~~~~---~~i~~~~~~--g~~v~~~-v~s~~~a~~a~~~g~D~ivv~-G~eaGGh~~~------~~ 149 (332)
+ +|+|.+. .|. .. +.++.+++. +..|+.. |.+.+.++.+.++|+|+|.|- |+ |..+.+ ..
T Consensus 119 ~~~~d~iviD~AhGh-s~~~i~~ik~ir~~~p~~~viaGNV~T~e~a~~Li~aGAD~ikVgiGp--GSicttR~~~Gvg~ 195 (343)
T TIGR01305 119 VPQLKFICLDVANGY-SEHFVEFVKLVREAFPEHTIMAGNVVTGEMVEELILSGADIVKVGIGP--GSVCTTRTKTGVGY 195 (343)
T ss_pred CCCCCEEEEECCCCc-HHHHHHHHHHHHhhCCCCeEEEecccCHHHHHHHHHcCCCEEEEcccC--CCcccCceeCCCCc
Confidence 4 8998773 343 33 445666653 6677765 999999999999999999882 33 222111 12
Q ss_pred chhhhHHHHHHHhCCCCCcEEeecCcCCHHHHHHHHHcCcceeeeccccccCccCCCC
Q 020013 150 GLISLLPMVVDLIGDRDIPIIAAGGIVDARGYVAALSLGAQGICLGTRFVASEESYAH 207 (332)
Q Consensus 150 ~~~~ll~~i~~~~~~~~iPviaaGGI~~~~~v~~al~~GA~gV~~GT~fl~t~Es~~~ 207 (332)
+.+..+++++++....++|||+.|||.++.|+.+||++|||+|++|+.|..+.|++..
T Consensus 196 pqltAv~~~a~aa~~~~v~VIaDGGIr~~gDI~KALA~GAd~VMlG~llAG~~Espg~ 253 (343)
T TIGR01305 196 PQLSAVIECADAAHGLKGHIISDGGCTCPGDVAKAFGAGADFVMLGGMFAGHTESGGE 253 (343)
T ss_pred CHHHHHHHHHHHhccCCCeEEEcCCcCchhHHHHHHHcCCCEEEECHhhhCcCcCcce
Confidence 5788899999887655799999999999999999999999999999999999998764
|
A deep split separates two families of GMP reductase. This family includes both eukaryotic and some proteobacterial sequences, while the other family contains other bacterial sequences. |
| >PRK05096 guanosine 5'-monophosphate oxidoreductase; Provisional | Back alignment and domain information |
|---|
Probab=99.80 E-value=4.9e-18 Score=155.77 Aligned_cols=193 Identities=19% Similarity=0.167 Sum_probs=142.5
Q ss_pred ccceecCCCCCCCCcHHHHHHHHhCCCceeecCCCCCCHHHHHHHHHHHHhhcCCcEEEEeecCCCCHHHHHHHHh--cC
Q 020013 10 EYGIVQAPLGPDISGPELVAAVANAGGLGLLRAPDWEAPDYLRDLIRKTRSLTERPFGVGVVLAFPHNENIKAILS--EK 87 (332)
Q Consensus 10 ~~Pii~apM~~g~s~~~la~avs~aGglG~i~~~~~~~~e~~~~~i~~~r~~~~~p~gvnl~~~~~~~~~~~~~~~--~~ 87 (332)
..|||.++|. .+.+.++|.++++.|+++++.- ..++|+..+.+++.+........|.+-+...+.+.++.+++ .+
T Consensus 46 giPii~AnMd-TV~~~~mA~~la~~g~~~~iHk--~~~~e~~~~fv~~~~~~~~~~~~vavG~~~~d~er~~~L~~~~~g 122 (346)
T PRK05096 46 GVPIIAANMD-TVGTFEMAKALASFDILTAVHK--HYSVEEWAAFVNNSSADVLKHVMVSTGTSDADFEKTKQILALSPA 122 (346)
T ss_pred CCceEecCCC-ccccHHHHHHHHHCCCeEEEec--CCCHHHHHHHHHhccccccceEEEEecCCHHHHHHHHHHHhcCCC
Confidence 3899999998 7999999999999999999985 35888777777776642222233333333334567777887 48
Q ss_pred CcEEEEc--cCCCcH---HHHHHHHhC--CCEEE-EecCCHHHHHHHHHcCCCEEEEecCCCCcccCCC------Cchhh
Q 020013 88 VAVLQVS--WGEYSE---ELVLEAHSA--GVKVV-PQVGSFDEARKAVNAGVDAIIVQGREAGGHVIGQ------DGLIS 153 (332)
Q Consensus 88 ~~~I~~~--~g~~~~---~~i~~~~~~--g~~v~-~~v~s~~~a~~a~~~g~D~ivv~G~eaGGh~~~~------~~~~~ 153 (332)
+|+|.+. .|. .. +.++.+|+. +..|+ ..|.|.+.++.++++|+|+|.| |...|..+... .+.+.
T Consensus 123 ~D~iviD~AhGh-s~~~i~~ik~ik~~~P~~~vIaGNV~T~e~a~~Li~aGAD~vKV-GIGpGSiCtTr~vtGvG~PQlt 200 (346)
T PRK05096 123 LNFICIDVANGY-SEHFVQFVAKAREAWPDKTICAGNVVTGEMVEELILSGADIVKV-GIGPGSVCTTRVKTGVGYPQLS 200 (346)
T ss_pred CCEEEEECCCCc-HHHHHHHHHHHHHhCCCCcEEEecccCHHHHHHHHHcCCCEEEE-cccCCccccCccccccChhHHH
Confidence 9998873 343 44 445666653 44544 5788999999999999999987 33334433111 24466
Q ss_pred hHHHHHHHhCCCCCcEEeecCcCCHHHHHHHHHcCcceeeeccccccCccCCCC
Q 020013 154 LLPMVVDLIGDRDIPIIAAGGIVDARGYVAALSLGAQGICLGTRFVASEESYAH 207 (332)
Q Consensus 154 ll~~i~~~~~~~~iPviaaGGI~~~~~v~~al~~GA~gV~~GT~fl~t~Es~~~ 207 (332)
.+.++.++....++|||+.|||.+..|+.++|++|||.|++|+-|..+.|||..
T Consensus 201 AV~~~a~~a~~~gvpiIADGGi~~sGDI~KAlaaGAd~VMlGsllAGt~EsPGe 254 (346)
T PRK05096 201 AVIECADAAHGLGGQIVSDGGCTVPGDVAKAFGGGADFVMLGGMLAGHEESGGE 254 (346)
T ss_pred HHHHHHHHHHHcCCCEEecCCcccccHHHHHHHcCCCEEEeChhhcCcccCCCc
Confidence 666666655445799999999999999999999999999999999999999764
|
|
| >PRK05567 inosine 5'-monophosphate dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=99.78 E-value=2.1e-17 Score=163.19 Aligned_cols=201 Identities=23% Similarity=0.376 Sum_probs=143.9
Q ss_pred chhhcCCccceecCCCCCCCCcHHHHHHHHhCCCceeecCCCCCCHHHHHHHHHHHHhhcC-------------------
Q 020013 3 WRGMLGFEYGIVQAPLGPDISGPELVAAVANAGGLGLLRAPDWEAPDYLRDLIRKTRSLTE------------------- 63 (332)
Q Consensus 3 ~~~~l~~~~Pii~apM~~g~s~~~la~avs~aGglG~i~~~~~~~~e~~~~~i~~~r~~~~------------------- 63 (332)
+++.+++++||+++||. +++..+|+.+|+++|++|+|.. + .++++..+++++++...+
T Consensus 34 l~~~~~~~~Piv~a~m~-~vT~~ela~ava~~GglG~i~~-~-~~~e~~~~~I~~vk~~~dim~~~~v~i~~~~tv~ea~ 110 (486)
T PRK05567 34 LTKNIRLNIPLLSAAMD-TVTEARMAIAMAREGGIGVIHK-N-MSIEEQAEEVRKVKRSESGVVTDPVTVTPDTTLAEAL 110 (486)
T ss_pred hhhhcCcCcCEEeCCCC-CcCHHHHHHHHHhCCCCCEecC-C-CCHHHHHHHHHHhhhhhhcccCCCeEeCCCCCHHHHH
Confidence 67899999999999998 7999999999999999999985 3 578777777776553210
Q ss_pred ------------------CcEEE---------------------------------------------------------
Q 020013 64 ------------------RPFGV--------------------------------------------------------- 68 (332)
Q Consensus 64 ------------------~p~gv--------------------------------------------------------- 68 (332)
+++|+
T Consensus 111 ~~m~~~~~~~lpVvd~~g~lvGiVt~~DL~~~~~~~~~V~dim~~~~~v~v~~~~sl~eal~~m~~~~~~~lpVVDe~g~ 190 (486)
T PRK05567 111 ALMARYGISGVPVVDENGKLVGIITNRDVRFETDLSQPVSEVMTKERLVTVPEGTTLEEALELLHEHRIEKLPVVDDNGR 190 (486)
T ss_pred HHHHHhCCCEEEEEccCCEEEEEEEHHHhhhcccCCCcHHHHcCCCCCEEECCCCCHHHHHHHHHHcCCCEEEEEcCCCc
Confidence 00000
Q ss_pred --Eeec----------C-------------------CCCHHHHHHHHhcCCcEEEEc--cCCC--cHHHHHHHHhC--CC
Q 020013 69 --GVVL----------A-------------------FPHNENIKAILSEKVAVLQVS--WGEY--SEELVLEAHSA--GV 111 (332)
Q Consensus 69 --nl~~----------~-------------------~~~~~~~~~~~~~~~~~I~~~--~g~~--~~~~i~~~~~~--g~ 111 (332)
+++. + ....+.++.+.+.+++++.+. .|.. ..+.++.+++. ++
T Consensus 191 lvGiIT~~DLl~~~~~p~a~~d~~g~l~V~aai~~~~~~~e~a~~L~~agvdvivvD~a~g~~~~vl~~i~~i~~~~p~~ 270 (486)
T PRK05567 191 LKGLITVKDIEKAEEFPNACKDEQGRLRVGAAVGVGADNEERAEALVEAGVDVLVVDTAHGHSEGVLDRVREIKAKYPDV 270 (486)
T ss_pred EEEEEEhHHhhhhhhCCCcccccCCCEEEEeecccCcchHHHHHHHHHhCCCEEEEECCCCcchhHHHHHHHHHhhCCCC
Confidence 0000 0 001245566778888887664 1321 12345556553 55
Q ss_pred EE-EEecCCHHHHHHHHHcCCCEEEEecCCCCcccCCC------CchhhhHHHHHHHhCCCCCcEEeecCcCCHHHHHHH
Q 020013 112 KV-VPQVGSFDEARKAVNAGVDAIIVQGREAGGHVIGQ------DGLISLLPMVVDLIGDRDIPIIAAGGIVDARGYVAA 184 (332)
Q Consensus 112 ~v-~~~v~s~~~a~~a~~~g~D~ivv~G~eaGGh~~~~------~~~~~ll~~i~~~~~~~~iPviaaGGI~~~~~v~~a 184 (332)
++ +..+.|.++++.+.++|+|+|.+ |...|....+. .+++..+.++.+.....++|||+.|||.++.++.++
T Consensus 271 ~vi~g~v~t~e~a~~l~~aGad~i~v-g~g~gs~~~~r~~~~~g~p~~~~~~~~~~~~~~~~~~viadGGi~~~~di~kA 349 (486)
T PRK05567 271 QIIAGNVATAEAARALIEAGADAVKV-GIGPGSICTTRIVAGVGVPQITAIADAAEAAKKYGIPVIADGGIRYSGDIAKA 349 (486)
T ss_pred CEEEeccCCHHHHHHHHHcCCCEEEE-CCCCCccccceeecCCCcCHHHHHHHHHHHhccCCCeEEEcCCCCCHHHHHHH
Confidence 64 47889999999999999999987 33222111111 356778888887664447999999999999999999
Q ss_pred HHcCcceeeeccccccCccCCCC
Q 020013 185 LSLGAQGICLGTRFVASEESYAH 207 (332)
Q Consensus 185 l~~GA~gV~~GT~fl~t~Es~~~ 207 (332)
|++|||.|++||.|..+.||+..
T Consensus 350 la~GA~~v~~G~~~a~~~e~pg~ 372 (486)
T PRK05567 350 LAAGASAVMLGSMLAGTEEAPGE 372 (486)
T ss_pred HHhCCCEEEECccccccccCCCc
Confidence 99999999999999999999864
|
|
| >TIGR02151 IPP_isom_2 isopentenyl-diphosphate delta-isomerase, type 2 | Back alignment and domain information |
|---|
Probab=99.78 E-value=4.2e-18 Score=160.38 Aligned_cols=191 Identities=25% Similarity=0.275 Sum_probs=135.9
Q ss_pred hhcC--CccceecCCCCCCCC------cHHHHHHHHhCC---CceeecCCCCCCHHHHHHHHHHHHh-hcCCcEEEEeec
Q 020013 5 GMLG--FEYGIVQAPLGPDIS------GPELVAAVANAG---GLGLLRAPDWEAPDYLRDLIRKTRS-LTERPFGVGVVL 72 (332)
Q Consensus 5 ~~l~--~~~Pii~apM~~g~s------~~~la~avs~aG---glG~i~~~~~~~~e~~~~~i~~~r~-~~~~p~gvnl~~ 72 (332)
++|| +++||+++||+ |.+ +++|+.+++++| ++|..... +.+++.... .+.+|+ .++.|+.+|+..
T Consensus 46 ~~~g~~l~~Pi~iaaMt-Gg~~~~~~in~~La~~a~~~g~~~~~Gs~~~~-~~~~~~~~~-~~~vr~~~~~~p~i~nl~~ 122 (333)
T TIGR02151 46 EFLGKRLKAPFYINAMT-GGSEEAGKINRNLARAARELGIPMGVGSQRAA-LKDPETADT-FEVVREEAPNGPLIANIGA 122 (333)
T ss_pred EECCccccCCEEEeCCC-CCchhHHHHHHHHHHHHHHcCCCeEEcCchhh-ccChhhHhH-HHHHHHhCCCCcEEeecCc
Confidence 4455 78999999998 568 899999999999 77776653 567775444 477777 578999999987
Q ss_pred CCCC----HHHHHHHHhcCCcEEEEccCCC-----------cH---HHHHHHHhC-CCEEEEec----CCHHHHHHHHHc
Q 020013 73 AFPH----NENIKAILSEKVAVLQVSWGEY-----------SE---ELVLEAHSA-GVKVVPQV----GSFDEARKAVNA 129 (332)
Q Consensus 73 ~~~~----~~~~~~~~~~~~~~I~~~~g~~-----------~~---~~i~~~~~~-g~~v~~~v----~s~~~a~~a~~~ 129 (332)
.... ++..+.+...+++++.+|.+.. .. +.++.+++. +++|+.+. .+.+.++.+.++
T Consensus 123 ~~~~~~~~~~~~~~i~~i~adal~i~ln~~q~~~~p~g~~~f~~~le~i~~i~~~~~vPVivK~~g~g~~~~~a~~L~~a 202 (333)
T TIGR02151 123 PQLVEGGPEEAQEAIDMIEADALAIHLNVLQELVQPEGDRNFKGWLEKIAEICSQLSVPVIVKEVGFGISKEVAKLLADA 202 (333)
T ss_pred hhhccccHHHHHHHHHHhcCCCEEEcCcccccccCCCCCcCHHHHHHHHHHHHHhcCCCEEEEecCCCCCHHHHHHHHHc
Confidence 5431 1233333345788888775311 11 334555554 78877653 478999999999
Q ss_pred CCCEEEEecCCCCcccCC-------------------CCchhhhHHHHHHHhCCCCCcEEeecCcCCHHHHHHHHHcCcc
Q 020013 130 GVDAIIVQGREAGGHVIG-------------------QDGLISLLPMVVDLIGDRDIPIIAAGGIVDARGYVAALSLGAQ 190 (332)
Q Consensus 130 g~D~ivv~G~eaGGh~~~-------------------~~~~~~ll~~i~~~~~~~~iPviaaGGI~~~~~v~~al~~GA~ 190 (332)
|+|+|.+.|. ||+.+. ..++...++++++. ..++|||++|||.++.++.++|++|||
T Consensus 203 Gvd~I~Vsg~--gGt~~~~ie~~r~~~~~~~~~~~~~g~~t~~~l~~~~~~--~~~ipVIasGGI~~~~di~kaLalGAd 278 (333)
T TIGR02151 203 GVSAIDVAGA--GGTSWAQVENYRAKGSNLASFFNDWGIPTAASLLEVRSD--APDAPIIASGGLRTGLDVAKAIALGAD 278 (333)
T ss_pred CCCEEEECCC--CCCcccchhhhcccccccchhhhcccHhHHHHHHHHHhc--CCCCeEEEECCCCCHHHHHHHHHhCCC
Confidence 9999999874 554211 01123345555541 127999999999999999999999999
Q ss_pred eeeeccccccCc
Q 020013 191 GICLGTRFVASE 202 (332)
Q Consensus 191 gV~~GT~fl~t~ 202 (332)
+|++|+.|+..-
T Consensus 279 ~V~igr~~L~~~ 290 (333)
T TIGR02151 279 AVGMARPFLKAA 290 (333)
T ss_pred eehhhHHHHHHH
Confidence 999999998553
|
Isopentenyl-diphosphate delta-isomerase (IPP isomerase) interconverts isopentenyl diphosphate and dimethylallyl diphosphate. This model represents the type 2 enzyme. FMN, NADPH, and Mg2+ are required by this form, which lacks homology to the type 1 enzyme (TIGR02150). IPP is precursor to many compounds, including enzyme cofactors, sterols, and isoprenoids. |
| >PRK07807 inosine 5-monophosphate dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=99.74 E-value=6.3e-17 Score=158.39 Aligned_cols=162 Identities=22% Similarity=0.274 Sum_probs=116.3
Q ss_pred HHHHHHHhcCCcEEEEc--cCC--CcHHHHHHHHhC--CCEEEE-ecCCHHHHHHHHHcCCCEEEEecCCCCcccC----
Q 020013 78 ENIKAILSEKVAVLQVS--WGE--YSEELVLEAHSA--GVKVVP-QVGSFDEARKAVNAGVDAIIVQGREAGGHVI---- 146 (332)
Q Consensus 78 ~~~~~~~~~~~~~I~~~--~g~--~~~~~i~~~~~~--g~~v~~-~v~s~~~a~~a~~~g~D~ivv~G~eaGGh~~---- 146 (332)
+.++.+.+.++++|.+. .|. ...+.++.+|+. ++.+++ .|.|.+.++.+.++|+|+|.+ |...|..+.
T Consensus 230 ~~a~~Lv~aGvd~i~~D~a~~~~~~~~~~i~~ik~~~p~~~v~agnv~t~~~a~~l~~aGad~v~v-gig~gsictt~~~ 308 (479)
T PRK07807 230 AKARALLEAGVDVLVVDTAHGHQEKMLEALRAVRALDPGVPIVAGNVVTAEGTRDLVEAGADIVKV-GVGPGAMCTTRMM 308 (479)
T ss_pred HHHHHHHHhCCCEEEEeccCCccHHHHHHHHHHHHHCCCCeEEeeccCCHHHHHHHHHcCCCEEEE-CccCCcccccccc
Confidence 34556677888888763 232 223567777764 678887 899999999999999999976 332233221
Q ss_pred --CCCchhhhHHHHHHHhCCCCCcEEeecCcCCHHHHHHHHHcCcceeeeccccccCccCCC-------CHHHHH-----
Q 020013 147 --GQDGLISLLPMVVDLIGDRDIPIIAAGGIVDARGYVAALSLGAQGICLGTRFVASEESYA-------HPEYKR----- 212 (332)
Q Consensus 147 --~~~~~~~ll~~i~~~~~~~~iPviaaGGI~~~~~v~~al~~GA~gV~~GT~fl~t~Es~~-------~~~~k~----- 212 (332)
-..+.+.++.++.++....++|||+.|||.++.++.++|++||++|++|+.|..|.||+. ...||+
T Consensus 309 ~~~~~p~~~av~~~~~~~~~~~~~via~ggi~~~~~~~~al~~ga~~v~~g~~~ag~~Espg~~~~~~~g~~~k~yrgmg 388 (479)
T PRK07807 309 TGVGRPQFSAVLECAAAARELGAHVWADGGVRHPRDVALALAAGASNVMIGSWFAGTYESPGDLMRDRDGRPYKESFGMA 388 (479)
T ss_pred cCCchhHHHHHHHHHHHHHhcCCcEEecCCCCCHHHHHHHHHcCCCeeeccHhhccCccCCCceEeccCCeEEEEeeccc
Confidence 113567788888775443479999999999999999999999999999999999999998 556666
Q ss_pred ---HHhcC--CCceEEEEecccCCCCCCceeecChHHH
Q 020013 213 ---KLVEM--DKTEYTDVFGRARWPGAPHRVLQTPFFS 245 (332)
Q Consensus 213 ---~~~~~--~~t~~t~~~~~~~~~g~~~R~l~n~~~~ 245 (332)
++.+. .++.++..+ .+++.|++.+.|..
T Consensus 389 s~~a~~~~~~~~~~~~~~~-----~~~~~eGv~~~~~~ 421 (479)
T PRK07807 389 SARAVAARTAGDSAFDRAR-----KALFEEGISTSRMY 421 (479)
T ss_pred cHHHHhcccCccchhhhcc-----cCCCCCCccceeee
Confidence 55432 222223222 36777888887643
|
|
| >PRK05458 guanosine 5'-monophosphate oxidoreductase; Provisional | Back alignment and domain information |
|---|
Probab=99.73 E-value=2e-16 Score=147.02 Aligned_cols=189 Identities=20% Similarity=0.272 Sum_probs=139.4
Q ss_pred CCccceecCCCCCCCCcHHHHHHHHhCCCceeecCCCCCCHHHHHHHHHHHHhhcCCcEEEEeecCC--CCHHHHHHHHh
Q 020013 8 GFEYGIVQAPLGPDISGPELVAAVANAGGLGLLRAPDWEAPDYLRDLIRKTRSLTERPFGVGVVLAF--PHNENIKAILS 85 (332)
Q Consensus 8 ~~~~Pii~apM~~g~s~~~la~avs~aGglG~i~~~~~~~~e~~~~~i~~~r~~~~~p~gvnl~~~~--~~~~~~~~~~~ 85 (332)
.+++|++..+|. ...+.+||....+.|+++++.- .++|......++.+ +..+-+|+-+.. .+.+.++.+++
T Consensus 35 ~l~~P~~inAM~-t~iN~~LA~~a~~~G~~~~~~k---~~~e~~~~~~r~~~---~~~l~v~~~vg~~~~~~~~~~~Lv~ 107 (326)
T PRK05458 35 TFKLPVVPANMQ-TIIDEKIAEWLAENGYFYIMHR---FDPEARIPFIKDMH---EQGLIASISVGVKDDEYDFVDQLAA 107 (326)
T ss_pred EecCcEEEeccc-chhHHHHHHHHHHcCCEEEEec---CCHHHHHHHHHhcc---ccccEEEEEecCCHHHHHHHHHHHh
Confidence 367899999997 5889999999999999999864 37776555554443 222345554433 23466778888
Q ss_pred cCC--cEEEEcc----CCCcHHHHHHHHhC--CCEEEE-ecCCHHHHHHHHHcCCCEEEEecCCCCccc------CCCCc
Q 020013 86 EKV--AVLQVSW----GEYSEELVLEAHSA--GVKVVP-QVGSFDEARKAVNAGVDAIIVQGREAGGHV------IGQDG 150 (332)
Q Consensus 86 ~~~--~~I~~~~----g~~~~~~i~~~~~~--g~~v~~-~v~s~~~a~~a~~~g~D~ivv~G~eaGGh~------~~~~~ 150 (332)
+++ |+|.+.. +....++++.+++. +++|+. .|.|.++++.+.++|+|++.+-+. .|... +...+
T Consensus 108 ag~~~d~i~iD~a~gh~~~~~e~I~~ir~~~p~~~vi~g~V~t~e~a~~l~~aGad~i~vg~~-~G~~~~t~~~~g~~~~ 186 (326)
T PRK05458 108 EGLTPEYITIDIAHGHSDSVINMIQHIKKHLPETFVIAGNVGTPEAVRELENAGADATKVGIG-PGKVCITKIKTGFGTG 186 (326)
T ss_pred cCCCCCEEEEECCCCchHHHHHHHHHHHhhCCCCeEEEEecCCHHHHHHHHHcCcCEEEECCC-CCcccccccccCCCCC
Confidence 854 9998821 22234667777764 577887 599999999999999999887432 11110 01123
Q ss_pred --hhhhHHHHHHHhCCCCCcEEeecCcCCHHHHHHHHHcCcceeeeccccccCccCCCC
Q 020013 151 --LISLLPMVVDLIGDRDIPIIAAGGIVDARGYVAALSLGAQGICLGTRFVASEESYAH 207 (332)
Q Consensus 151 --~~~ll~~i~~~~~~~~iPviaaGGI~~~~~v~~al~~GA~gV~~GT~fl~t~Es~~~ 207 (332)
.+..++++++.+ ++|||+.|||.++.|+.++|++||++|++|+.|+.+.||+..
T Consensus 187 ~w~l~ai~~~~~~~---~ipVIAdGGI~~~~Di~KaLa~GA~aV~vG~~~~~~~espg~ 242 (326)
T PRK05458 187 GWQLAALRWCAKAA---RKPIIADGGIRTHGDIAKSIRFGATMVMIGSLFAGHEESPGK 242 (326)
T ss_pred ccHHHHHHHHHHHc---CCCEEEeCCCCCHHHHHHHHHhCCCEEEechhhcCCccCCCc
Confidence 344588888776 799999999999999999999999999999999999999764
|
|
| >cd02911 arch_FMN Archeal FMN-binding domain | Back alignment and domain information |
|---|
Probab=99.72 E-value=3.7e-16 Score=139.94 Aligned_cols=173 Identities=17% Similarity=0.233 Sum_probs=127.1
Q ss_pred ceecCCCCCCCCcHHHHHHHHhCCCceeecCCCCC----------------------CHHHHHHHHHHHHhhcCCcEEEE
Q 020013 12 GIVQAPLGPDISGPELVAAVANAGGLGLLRAPDWE----------------------APDYLRDLIRKTRSLTERPFGVG 69 (332)
Q Consensus 12 Pii~apM~~g~s~~~la~avs~aGglG~i~~~~~~----------------------~~e~~~~~i~~~r~~~~~p~gvn 69 (332)
||++|||+ |+++.+|+.++++.+|+++++..+.. ..+.+++++..+++. +.|+++|
T Consensus 1 ~~~lApMa-g~td~~f~~~~~~~~g~~~~Gg~~~d~~~~~aa~~~~~~~~~ef~~~~~~~~~~~~~~~~~~~-~~p~~vq 78 (233)
T cd02911 1 PVALASMA-GITDGDFCRKRADHAGLVFLGGYNLDERTIEAARKLVKRGRKEFLPDDPLEFIEGEIKALKDS-NVLVGVN 78 (233)
T ss_pred CceeeecC-CCcCHHHHHhhCccCCEEEEcccccCHHHHHHHHHHHhcCCccccccchHHHHHHHHHHhhcc-CCeEEEE
Confidence 89999999 89999999999999999999653211 234455555655543 5799999
Q ss_pred eecCCCC--HHHHHHHHhcCCcEEEEccCCCcH-------------------HHHHHHHhCCCEEEEecC------CHHH
Q 020013 70 VVLAFPH--NENIKAILSEKVAVLQVSWGEYSE-------------------ELVLEAHSAGVKVVPQVG------SFDE 122 (332)
Q Consensus 70 l~~~~~~--~~~~~~~~~~~~~~I~~~~g~~~~-------------------~~i~~~~~~g~~v~~~v~------s~~~ 122 (332)
+..+.+. .+..+.+. ...+.|.+++|+|.. ++++.+++.+++|..++. +.+.
T Consensus 79 i~g~~~~~~~~aa~~~~-~~~~~ielN~gCP~~~v~~~g~G~~Ll~~p~~l~eiv~avr~~~~pVsvKir~g~~~~~~~l 157 (233)
T cd02911 79 VRSSSLEPLLNAAALVA-KNAAILEINAHCRQPEMVEAGAGEALLKDPERLSEFIKALKETGVPVSVKIRAGVDVDDEEL 157 (233)
T ss_pred ecCCCHHHHHHHHHHHh-hcCCEEEEECCCCcHHHhcCCcchHHcCCHHHHHHHHHHHHhcCCCEEEEEcCCcCcCHHHH
Confidence 9987652 12223333 357999998887532 334556667888887763 3566
Q ss_pred HHHHHHcCCCEEEEecCCCCcccCCCCchhhhHHHHHHHhCCCCCcEEeecCcCCHHHHHHHHHcCcceeeeccc
Q 020013 123 ARKAVNAGVDAIIVQGREAGGHVIGQDGLISLLPMVVDLIGDRDIPIIAAGGIVDARGYVAALSLGAQGICLGTR 197 (332)
Q Consensus 123 a~~a~~~g~D~ivv~G~eaGGh~~~~~~~~~ll~~i~~~~~~~~iPviaaGGI~~~~~v~~al~~GA~gV~~GT~ 197 (332)
++.+.++|+|+|-+.+...|+ ...+..+++++ . ++|||+.|||.+++++.+++..|||+|++|+.
T Consensus 158 a~~l~~aG~d~ihv~~~~~g~-----~ad~~~I~~i~--~---~ipVIgnGgI~s~eda~~~l~~GaD~VmiGR~ 222 (233)
T cd02911 158 ARLIEKAGADIIHVDAMDPGN-----HADLKKIRDIS--T---ELFIIGNNSVTTIESAKEMFSYGADMVSVARA 222 (233)
T ss_pred HHHHHHhCCCEEEECcCCCCC-----CCcHHHHHHhc--C---CCEEEEECCcCCHHHHHHHHHcCCCEEEEcCC
Confidence 677889999988775443332 23467777765 3 79999999999999999999999999999998
|
This family of archaeal proteins are part of the NAD(P)H-dependent flavin oxidoreductase (oxidored) FMN-binding family that reduce a range of alternative electron acceptors. Most use FAD/FMN as a cofactor and NAD(P)H as electron donor. Some contain 4Fe-4S cluster to transfer electron from FAD to FMN. The specific function of this group is unknown. |
| >TIGR01302 IMP_dehydrog inosine-5'-monophosphate dehydrogenase | Back alignment and domain information |
|---|
Probab=99.72 E-value=7.8e-16 Score=150.63 Aligned_cols=129 Identities=26% Similarity=0.415 Sum_probs=97.6
Q ss_pred HHHHHHHhcCCcEEEEcc--CC--CcHHHHHHHHhC--CCEEEE-ecCCHHHHHHHHHcCCCEEEEecCCCCcccCCC--
Q 020013 78 ENIKAILSEKVAVLQVSW--GE--YSEELVLEAHSA--GVKVVP-QVGSFDEARKAVNAGVDAIIVQGREAGGHVIGQ-- 148 (332)
Q Consensus 78 ~~~~~~~~~~~~~I~~~~--g~--~~~~~i~~~~~~--g~~v~~-~v~s~~~a~~a~~~g~D~ivv~G~eaGGh~~~~-- 148 (332)
+.++.+.+.++++|.+.. |. ...+.++.+++. .++|+. .+.|.++++.+.++|+|+|.+ |...|+.+...
T Consensus 227 ~r~~~L~~aG~d~I~vd~a~g~~~~~~~~i~~i~~~~~~~~vi~G~v~t~~~a~~l~~aGad~i~v-g~g~G~~~~t~~~ 305 (450)
T TIGR01302 227 ERAEALVKAGVDVIVIDSSHGHSIYVIDSIKEIKKTYPDLDIIAGNVATAEQAKALIDAGADGLRV-GIGPGSICTTRIV 305 (450)
T ss_pred HHHHHHHHhCCCEEEEECCCCcHhHHHHHHHHHHHhCCCCCEEEEeCCCHHHHHHHHHhCCCEEEE-CCCCCcCCcccee
Confidence 456677888999988753 32 122456666654 566654 899999999999999999988 43334322111
Q ss_pred ----CchhhhHHHHHHHhCCCCCcEEeecCcCCHHHHHHHHHcCcceeeeccccccCccCCCC
Q 020013 149 ----DGLISLLPMVVDLIGDRDIPIIAAGGIVDARGYVAALSLGAQGICLGTRFVASEESYAH 207 (332)
Q Consensus 149 ----~~~~~ll~~i~~~~~~~~iPviaaGGI~~~~~v~~al~~GA~gV~~GT~fl~t~Es~~~ 207 (332)
.+.+..++++.+.....++|||+.|||.++.++.++|++||+.|++||.|..|+||+..
T Consensus 306 ~~~g~p~~~~i~~~~~~~~~~~vpviadGGi~~~~di~kAla~GA~~V~~G~~~a~~~e~pg~ 368 (450)
T TIGR01302 306 AGVGVPQITAVYDVAEYAAQSGIPVIADGGIRYSGDIVKALAAGADAVMLGSLLAGTTESPGE 368 (450)
T ss_pred cCCCccHHHHHHHHHHHHhhcCCeEEEeCCCCCHHHHHHHHHcCCCEEEECchhhcCCcCCCc
Confidence 24567777777665444799999999999999999999999999999999999999764
|
This model describes a rather tightly conserved cluster of IMP dehydrogenase sequences, many of which are characterized. The model excludes two related families of proteins proposed also to be IMP dehydrogenases, but without characterized members. These are related families are the subject of separate models. |
| >TIGR01306 GMP_reduct_2 guanosine monophosphate reductase, bacterial | Back alignment and domain information |
|---|
Probab=99.69 E-value=2.6e-15 Score=139.11 Aligned_cols=190 Identities=22% Similarity=0.275 Sum_probs=138.1
Q ss_pred CCccceecCCCCCCCCcHHHHHHHHhCCCceeecCCCCCCHHHHHHHHHHHHhhcCCcEEEEeecCCCCHHHHHHHHhcC
Q 020013 8 GFEYGIVQAPLGPDISGPELVAAVANAGGLGLLRAPDWEAPDYLRDLIRKTRSLTERPFGVGVVLAFPHNENIKAILSEK 87 (332)
Q Consensus 8 ~~~~Pii~apM~~g~s~~~la~avs~aGglG~i~~~~~~~~e~~~~~i~~~r~~~~~p~gvnl~~~~~~~~~~~~~~~~~ 87 (332)
.+++|++..+|. ...+.+|+....+.|+++++.- .++|+..+.+++.+.. ..+.++++-....+.+.+..+++.+
T Consensus 32 ~l~~P~~inAM~-t~in~~LA~~a~~~G~~~i~hK---~~~E~~~sfvrk~k~~-~L~v~~SvG~t~e~~~r~~~lv~a~ 106 (321)
T TIGR01306 32 KFKLPVVPANMQ-TIIDEKLAEQLAENGYFYIMHR---FDEESRIPFIKDMQER-GLFASISVGVKACEYEFVTQLAEEA 106 (321)
T ss_pred EecCcEEeeccc-hhhhHHHHHHHHHcCCEEEEec---CCHHHHHHHHHhcccc-ccEEEEEcCCCHHHHHHHHHHHhcC
Confidence 467999999997 6889999999999999999864 3787766665555421 1233333333333346788888888
Q ss_pred --CcEEEEc--cCCCcH---HHHHHHHhC--CCEEEEe-cCCHHHHHHHHHcCCCEEEEecCCCCcccC-------C-CC
Q 020013 88 --VAVLQVS--WGEYSE---ELVLEAHSA--GVKVVPQ-VGSFDEARKAVNAGVDAIIVQGREAGGHVI-------G-QD 149 (332)
Q Consensus 88 --~~~I~~~--~g~~~~---~~i~~~~~~--g~~v~~~-v~s~~~a~~a~~~g~D~ivv~G~eaGGh~~-------~-~~ 149 (332)
+|+|.+. .|. .. +.++.+++. ...++.. +.+.+.++.+.++|+|+|.+. ...|+... + ..
T Consensus 107 ~~~d~i~~D~ahg~-s~~~~~~i~~i~~~~p~~~vi~GnV~t~e~a~~l~~aGad~I~V~-~G~G~~~~tr~~~g~g~~~ 184 (321)
T TIGR01306 107 LTPEYITIDIAHGH-SNSVINMIKHIKTHLPDSFVIAGNVGTPEAVRELENAGADATKVG-IGPGKVCITKIKTGFGTGG 184 (321)
T ss_pred CCCCEEEEeCccCc-hHHHHHHHHHHHHhCCCCEEEEecCCCHHHHHHHHHcCcCEEEEC-CCCCccccceeeeccCCCc
Confidence 6988763 243 34 345566653 3445544 899999999999999999974 22233210 1 11
Q ss_pred chhhhHHHHHHHhCCCCCcEEeecCcCCHHHHHHHHHcCcceeeeccccccCccCCCC
Q 020013 150 GLISLLPMVVDLIGDRDIPIIAAGGIVDARGYVAALSLGAQGICLGTRFVASEESYAH 207 (332)
Q Consensus 150 ~~~~ll~~i~~~~~~~~iPviaaGGI~~~~~v~~al~~GA~gV~~GT~fl~t~Es~~~ 207 (332)
..+..+.++++.. ++|||+.|||.++.|+.++|++|||+|++|+.|..|.|||..
T Consensus 185 ~~l~ai~ev~~a~---~~pVIadGGIr~~~Di~KALa~GAd~Vmig~~~ag~~Espg~ 239 (321)
T TIGR01306 185 WQLAALRWCAKAA---RKPIIADGGIRTHGDIAKSIRFGASMVMIGSLFAGHEESPGE 239 (321)
T ss_pred hHHHHHHHHHHhc---CCeEEEECCcCcHHHHHHHHHcCCCEEeechhhcCcccCCCc
Confidence 2345677777766 799999999999999999999999999999999999998764
|
A deep split separates two families of GMP reductase. The other (TIGR01305) is found in eukaryotic and some proteobacterial lineages, including E. coli, while this family is found in a variety of bacterial lineages. |
| >COG4981 Enoyl reductase domain of yeast-type FAS1 [Lipid metabolism] | Back alignment and domain information |
|---|
Probab=99.69 E-value=2.9e-15 Score=142.80 Aligned_cols=218 Identities=24% Similarity=0.315 Sum_probs=161.3
Q ss_pred cchhhcCCccceecCCCCCCCCcHHHHHHHHhCCCceeecCCCCCCHHHHHHHHHHHHhhc--CCcEEEEeecCCCC---
Q 020013 2 GWRGMLGFEYGIVQAPLGPDISGPELVAAVANAGGLGLLRAPDWEAPDYLRDLIRKTRSLT--ERPFGVGVVLAFPH--- 76 (332)
Q Consensus 2 ~~~~~l~~~~Pii~apM~~g~s~~~la~avs~aGglG~i~~~~~~~~e~~~~~i~~~r~~~--~~p~gvnl~~~~~~--- 76 (332)
.|++++| +.||+.++|.+..-+|++++|.+|||----+..+++.+++-+.+.++++-.+. ..-+.+|.++.+|+
T Consensus 27 kfsrLtG-r~PillaGMTPtTVdp~ivAAaAnAGhwaELAGGGq~t~e~~~~~i~ql~~~lepG~t~qfN~ifldpylw~ 105 (717)
T COG4981 27 KFSRLTG-RSPILLAGMTPTTVDPDIVAAAANAGHWAELAGGGQVTEEIFTNAIEQLVSLLEPGRTAQFNSIFLDPYLWK 105 (717)
T ss_pred chhhhcC-CCCeeecCCCCCcCCHHHHHHHhcCCceeeecCCcccCHHHHHHHHHHHHhccCCCccceeeEEEechHHhh
Confidence 3678899 67999999997666999999999999877777778899999999999887653 45688898876653
Q ss_pred -----HHHHHHHHhcC--CcEEEEccCCCcH----HHHHHHHhCCCEEE-EecCCHHHHHHHH---HcCCC---EEEEec
Q 020013 77 -----NENIKAILSEK--VAVLQVSWGEYSE----ELVLEAHSAGVKVV-PQVGSFDEARKAV---NAGVD---AIIVQG 138 (332)
Q Consensus 77 -----~~~~~~~~~~~--~~~I~~~~g~~~~----~~i~~~~~~g~~v~-~~v~s~~~a~~a~---~~g~D---~ivv~G 138 (332)
...++.+...| ++.|.++.|.|.. ++++.+.+.|++.+ .+.++++..+..+ ++.+. ++-++|
T Consensus 106 ~qig~krLv~kara~G~~I~gvvIsAGIP~le~A~ElI~~L~~~G~~yv~fKPGtIeqI~svi~IAka~P~~pIilq~eg 185 (717)
T COG4981 106 LQIGGKRLVQKARASGAPIDGVVISAGIPSLEEAVELIEELGDDGFPYVAFKPGTIEQIRSVIRIAKANPTFPIILQWEG 185 (717)
T ss_pred hcCChHHHHHHHHhcCCCcceEEEecCCCcHHHHHHHHHHHhhcCceeEEecCCcHHHHHHHHHHHhcCCCCceEEEEec
Confidence 44566676665 5778888888654 45566666698866 4567877765543 33333 233478
Q ss_pred CCCCcccCCCCch-hhhHHHHHHHhCCCCCcEEeecCcCCHHHHHHHHH-----------cCcceeeeccccccCccCCC
Q 020013 139 REAGGHVIGQDGL-ISLLPMVVDLIGDRDIPIIAAGGIVDARGYVAALS-----------LGAQGICLGTRFVASEESYA 206 (332)
Q Consensus 139 ~eaGGh~~~~~~~-~~ll~~i~~~~~~~~iPviaaGGI~~~~~v~~al~-----------~GA~gV~~GT~fl~t~Es~~ 206 (332)
-.+|||. +-... -.+|....+.....+|-+++.|||+++++.+.+|. +-.||+.+||+.|.++|+..
T Consensus 186 GraGGHH-SweDld~llL~tYs~lR~~~NIvl~vGgGiGtp~~aa~YLTGeWSt~~g~P~MP~DGiLvGtaaMatKEatT 264 (717)
T COG4981 186 GRAGGHH-SWEDLDDLLLATYSELRSRDNIVLCVGGGIGTPDDAAPYLTGEWSTAYGFPPMPFDGILVGTAAMATKEATT 264 (717)
T ss_pred CccCCcc-chhhcccHHHHHHHHHhcCCCEEEEecCCcCChhhcccccccchhhhcCCCCCCcceeEechhHHhhhhccC
Confidence 8889986 32111 11222222211113799999999999999998884 56899999999999999999
Q ss_pred CHHHHHHHhcCCCce
Q 020013 207 HPEYKRKLVEMDKTE 221 (332)
Q Consensus 207 ~~~~k~~~~~~~~t~ 221 (332)
|+..|++|++.+.++
T Consensus 265 Sp~vK~~lv~t~Gvd 279 (717)
T COG4981 265 SPAVKEALVATQGVD 279 (717)
T ss_pred CHHHHHHHhhCCCCC
Confidence 999999999986654
|
|
| >cd02922 FCB2_FMN Flavocytochrome b2 (FCB2) FMN-binding domain | Back alignment and domain information |
|---|
Probab=99.67 E-value=4.3e-15 Score=139.90 Aligned_cols=206 Identities=16% Similarity=0.193 Sum_probs=139.4
Q ss_pred hhcC--CccceecCCCC---CCCCc--HHHHHHHHhCCCceeecCCCCCCHHHHHHHHHHHHhhcCCcEEEEeecCCC--
Q 020013 5 GMLG--FEYGIVQAPLG---PDISG--PELVAAVANAGGLGLLRAPDWEAPDYLRDLIRKTRSLTERPFGVGVVLAFP-- 75 (332)
Q Consensus 5 ~~l~--~~~Pii~apM~---~g~s~--~~la~avs~aGglG~i~~~~~~~~e~~~~~i~~~r~~~~~p~gvnl~~~~~-- 75 (332)
++|| +++||+-+||+ .+..+ ..++.+..++|...+++..+..+.|++. +.. ..+.|+-.++....+
T Consensus 57 ~~lG~~~~~Pi~iaP~~~~~~~~~~ge~~~AraA~~~gi~~~lss~s~~s~e~v~---~~~--~~~~~~w~Qly~~~d~~ 131 (344)
T cd02922 57 TILGHKVSLPFFISPAALAKLAHPDGELNLARAAGKHGILQMISTNASCSLEEIV---DAR--PPDQPLFFQLYVNKDRT 131 (344)
T ss_pred EECCcccCCceeeChHHHhhhCCchHHHHHHHHHHHcCCCEEecCcccCCHHHHH---Hhc--CCCCcEEEEEeecCCHH
Confidence 4565 67899999997 21222 2677777778876666654434444421 111 123566677765432
Q ss_pred -CHHHHHHHHhcCCcEEEEccCCC---------------------------------------------cHHHHHHHHh-
Q 020013 76 -HNENIKAILSEKVAVLQVSWGEY---------------------------------------------SEELVLEAHS- 108 (332)
Q Consensus 76 -~~~~~~~~~~~~~~~I~~~~g~~---------------------------------------------~~~~i~~~~~- 108 (332)
..+.++.+.+.|++++.++.+.+ ..+.++.+++
T Consensus 132 ~~~~l~~ra~~ag~~alvltvD~p~~g~r~~d~r~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~ 211 (344)
T cd02922 132 KTEELLKRAEKLGAKAIFLTVDAPVLGKRERDERLKAEEAVSDGPAGKKTKAKGGGAGRAMSGFIDPTLTWDDIKWLRKH 211 (344)
T ss_pred HHHHHHHHHHHcCCCEEEEECCCCCcCcchhhhhhcCCcCccccccccccccccchHHHHHhhccCCCCCHHHHHHHHHh
Confidence 14556777788999887764321 0123444554
Q ss_pred CCCE-EEEecCCHHHHHHHHHcCCCEEEEecCCCCcccCCCCchhhhHHHHHHHhC--CCCCcEEeecCcCCHHHHHHHH
Q 020013 109 AGVK-VVPQVGSFDEARKAVNAGVDAIIVQGREAGGHVIGQDGLISLLPMVVDLIG--DRDIPIIAAGGIVDARGYVAAL 185 (332)
Q Consensus 109 ~g~~-v~~~v~s~~~a~~a~~~g~D~ivv~G~eaGGh~~~~~~~~~ll~~i~~~~~--~~~iPviaaGGI~~~~~v~~al 185 (332)
.+.+ ++..+.+.++++.+.+.|+|+|++.|.. |...+...+++..++++.+.++ ..++|||++|||.++.|+.++|
T Consensus 212 ~~~PvivKgv~~~~dA~~a~~~G~d~I~vsnhg-G~~~d~~~~~~~~L~~i~~~~~~~~~~~~vi~~GGIr~G~Dv~kal 290 (344)
T cd02922 212 TKLPIVLKGVQTVEDAVLAAEYGVDGIVLSNHG-GRQLDTAPAPIEVLLEIRKHCPEVFDKIEVYVDGGVRRGTDVLKAL 290 (344)
T ss_pred cCCcEEEEcCCCHHHHHHHHHcCCCEEEEECCC-cccCCCCCCHHHHHHHHHHHHHHhCCCceEEEeCCCCCHHHHHHHH
Confidence 3445 5567889999999999999999999864 2222233456667888877532 1269999999999999999999
Q ss_pred HcCcceeeeccccccCccCCCCHHHHHHHhc
Q 020013 186 SLGAQGICLGTRFVASEESYAHPEYKRKLVE 216 (332)
Q Consensus 186 ~~GA~gV~~GT~fl~t~Es~~~~~~k~~~~~ 216 (332)
++||++|++||.|+...++...+...+.+..
T Consensus 291 aLGA~aV~iG~~~l~~l~~~G~~gv~~~l~~ 321 (344)
T cd02922 291 CLGAKAVGLGRPFLYALSAYGEEGVEKAIQI 321 (344)
T ss_pred HcCCCEEEECHHHHHHHhhccHHHHHHHHHH
Confidence 9999999999999999887655555544443
|
FCB2 (AKA L-lactate:cytochrome c oxidoreductase) is a respiratory enzyme located in the intermembrane space of fungal mitochondria which catalyzes the oxidation of L-lactate to pyruvate. FCB2 also participates in a short electron-transport chain involving cytochrome c and cytochrome oxidase which ultimately directs the reducing equivalents gained from L-lactate oxidation to oxygen, yielding one molecule of ATP for every L-lactate molecule consumed. FCB2 is composed of 2 domains: a C-terminal flavin-binding domain, which includes the active site for lacate oxidation, and an N-terminal b2-cytochrome domain, required for efficient cytochrome c reduction. FCB2 is a homotetramer and contains two noncovalently bound cofactors, FMN and heme per subunit. |
| >PRK01130 N-acetylmannosamine-6-phosphate 2-epimerase; Provisional | Back alignment and domain information |
|---|
Probab=99.65 E-value=1.3e-14 Score=129.27 Aligned_cols=164 Identities=20% Similarity=0.300 Sum_probs=124.4
Q ss_pred HHHHHHHHhCCCceeecCCCCCCHHHHHHHHHHHHhhcCCcEE-E--------EeecCCCCHHHHHHHHhcCCcEEEEcc
Q 020013 25 PELVAAVANAGGLGLLRAPDWEAPDYLRDLIRKTRSLTERPFG-V--------GVVLAFPHNENIKAILSEKVAVLQVSW 95 (332)
Q Consensus 25 ~~la~avs~aGglG~i~~~~~~~~e~~~~~i~~~r~~~~~p~g-v--------nl~~~~~~~~~~~~~~~~~~~~I~~~~ 95 (332)
.+++.++.++|+.++... ++ +.++++|+.++.|+- . +++. .+..++++.+.+.|+|+|.+..
T Consensus 26 ~~~a~a~~~~G~~~~~~~----~~----~~i~~i~~~~~~Pil~~~~~d~~~~~~~~-~~~~~~v~~a~~aGad~I~~d~ 96 (221)
T PRK01130 26 AAMALAAVQGGAVGIRAN----GV----EDIKAIRAVVDVPIIGIIKRDYPDSEVYI-TPTLKEVDALAAAGADIIALDA 96 (221)
T ss_pred HHHHHHHHHCCCeEEEcC----CH----HHHHHHHHhCCCCEEEEEecCCCCCCceE-CCCHHHHHHHHHcCCCEEEEeC
Confidence 567888888898888643 33 346677777788873 1 2433 2345678999999999888753
Q ss_pred C-------CCcHHHHHHHHh-CCCEEEEecCCHHHHHHHHHcCCCEEEEecC--CCCcccCCCCchhhhHHHHHHHhCCC
Q 020013 96 G-------EYSEELVLEAHS-AGVKVVPQVGSFDEARKAVNAGVDAIIVQGR--EAGGHVIGQDGLISLLPMVVDLIGDR 165 (332)
Q Consensus 96 g-------~~~~~~i~~~~~-~g~~v~~~v~s~~~a~~a~~~g~D~ivv~G~--eaGGh~~~~~~~~~ll~~i~~~~~~~ 165 (332)
. ....++++.+++ .+++++..+++.++++.+.+.|+|++.+... +...+. .....+.+++++++.+
T Consensus 97 ~~~~~p~~~~~~~~i~~~~~~~~i~vi~~v~t~ee~~~a~~~G~d~i~~~~~g~t~~~~~-~~~~~~~~i~~i~~~~--- 172 (221)
T PRK01130 97 TLRPRPDGETLAELVKRIKEYPGQLLMADCSTLEEGLAAQKLGFDFIGTTLSGYTEETKK-PEEPDFALLKELLKAV--- 172 (221)
T ss_pred CCCCCCCCCCHHHHHHHHHhCCCCeEEEeCCCHHHHHHHHHcCCCEEEcCCceeecCCCC-CCCcCHHHHHHHHHhC---
Confidence 2 233578889999 8999999999999999999999999977422 111111 1123477888888876
Q ss_pred CCcEEeecCcCCHHHHHHHHHcCcceeeeccccccC
Q 020013 166 DIPIIAAGGIVDARGYVAALSLGAQGICLGTRFVAS 201 (332)
Q Consensus 166 ~iPviaaGGI~~~~~v~~al~~GA~gV~~GT~fl~t 201 (332)
++||+++|||.+++++.+++++|||+|++||+|+..
T Consensus 173 ~iPvia~GGI~t~~~~~~~l~~GadgV~iGsai~~~ 208 (221)
T PRK01130 173 GCPVIAEGRINTPEQAKKALELGAHAVVVGGAITRP 208 (221)
T ss_pred CCCEEEECCCCCHHHHHHHHHCCCCEEEEchHhcCC
Confidence 799999999999999999999999999999998864
|
|
| >TIGR00737 nifR3_yhdG putative TIM-barrel protein, nifR3 family | Back alignment and domain information |
|---|
Probab=99.63 E-value=1.3e-14 Score=136.26 Aligned_cols=189 Identities=21% Similarity=0.313 Sum_probs=133.0
Q ss_pred cCCccceecCCCCCCCCcHHHHHHHHhCCCceeecCCCCCCHHHHHHHHHHHHh-----hcCCcEEEEeecCCCC--HHH
Q 020013 7 LGFEYGIVQAPLGPDISGPELVAAVANAGGLGLLRAPDWEAPDYLRDLIRKTRS-----LTERPFGVGVVLAFPH--NEN 79 (332)
Q Consensus 7 l~~~~Pii~apM~~g~s~~~la~avs~aGglG~i~~~~~~~~e~~~~~i~~~r~-----~~~~p~gvnl~~~~~~--~~~ 79 (332)
+.+++|+++|||. ++|+..+...+.+.| .+++.++ +.+.+.+....++.+. ..+.|+.+++..+.+. .+.
T Consensus 4 ~~~~~~l~lAPm~-~~t~~~fR~l~~~~g-~~~~~te-mi~~~~l~~~~~~~~~~~~~~~~~~p~i~ql~g~~~~~~~~a 80 (319)
T TIGR00737 4 IQLKSRVVLAPMA-GVTDSPFRRLVAEYG-AGLTVCE-MVSSEAIVYDSQRTMRLLDIAEDETPISVQLFGSDPDTMAEA 80 (319)
T ss_pred ccCCCCEEecCCC-CCCcHHHHHHHHHHC-CCEEEEC-CEEEhhhhcCCHHHHHHhhcCCccceEEEEEeCCCHHHHHHH
Confidence 3468999999998 799999999999988 5777654 3333332211111111 1257999999987762 223
Q ss_pred HHHHHhcCCcEEEEccCCCcH-------------------HHHHHHHh-CCCEEEEecC---------CHHHHHHHHHcC
Q 020013 80 IKAILSEKVAVLQVSWGEYSE-------------------ELVLEAHS-AGVKVVPQVG---------SFDEARKAVNAG 130 (332)
Q Consensus 80 ~~~~~~~~~~~I~~~~g~~~~-------------------~~i~~~~~-~g~~v~~~v~---------s~~~a~~a~~~g 130 (332)
.+.+.+.|+|.|.+++|+|.. ++++.+++ .++++..++. ..+.++.+.+.|
T Consensus 81 a~~~~~~G~d~IelN~gcP~~~~~~~~~Gs~l~~~~~~~~ei~~~vr~~~~~pv~vKir~g~~~~~~~~~~~a~~l~~~G 160 (319)
T TIGR00737 81 AKINEELGADIIDINMGCPVPKITKKGAGSALLRDPDLIGKIVKAVVDAVDIPVTVKIRIGWDDAHINAVEAARIAEDAG 160 (319)
T ss_pred HHHHHhCCCCEEEEECCCCHHHhcCCCccchHhCCHHHHHHHHHHHHhhcCCCEEEEEEcccCCCcchHHHHHHHHHHhC
Confidence 344556799999999887531 22333433 3677766552 234556778899
Q ss_pred CCEEEEecCCC-CcccCCCCchhhhHHHHHHHhCCCCCcEEeecCcCCHHHHHHHH-HcCcceeeeccccccCcc
Q 020013 131 VDAIIVQGREA-GGHVIGQDGLISLLPMVVDLIGDRDIPIIAAGGIVDARGYVAAL-SLGAQGICLGTRFVASEE 203 (332)
Q Consensus 131 ~D~ivv~G~ea-GGh~~~~~~~~~ll~~i~~~~~~~~iPviaaGGI~~~~~v~~al-~~GA~gV~~GT~fl~t~E 203 (332)
+|+|.+.|... +++. + ...+..+.++++.+ ++||++.|||.+++++.+++ ..|||+|++|++++..+.
T Consensus 161 ~d~i~vh~r~~~~~~~-~-~~~~~~i~~i~~~~---~ipvi~nGgI~~~~da~~~l~~~gad~VmigR~~l~~P~ 230 (319)
T TIGR00737 161 AQAVTLHGRTRAQGYS-G-EANWDIIARVKQAV---RIPVIGNGDIFSPEDAKAMLETTGCDGVMIGRGALGNPW 230 (319)
T ss_pred CCEEEEEcccccccCC-C-chhHHHHHHHHHcC---CCcEEEeCCCCCHHHHHHHHHhhCCCEEEEChhhhhCCh
Confidence 99999987532 2332 2 24578888888877 79999999999999999999 579999999999997654
|
Members of this family show a distant relationship to alpha/beta (TIM) barrel enzymes such as dihydroorotate dehydrogenase and glycolate oxidase. |
| >PRK10415 tRNA-dihydrouridine synthase B; Provisional | Back alignment and domain information |
|---|
Probab=99.62 E-value=2.4e-14 Score=134.26 Aligned_cols=189 Identities=18% Similarity=0.247 Sum_probs=130.3
Q ss_pred hcCCccceecCCCCCCCCcHHHHHHHHhCCCceeecCCCCCCHH--HHHHHHHHHHh---hcCCcEEEEeecCCCCHHH-
Q 020013 6 MLGFEYGIVQAPLGPDISGPELVAAVANAGGLGLLRAPDWEAPD--YLRDLIRKTRS---LTERPFGVGVVLAFPHNEN- 79 (332)
Q Consensus 6 ~l~~~~Pii~apM~~g~s~~~la~avs~aGglG~i~~~~~~~~e--~~~~~i~~~r~---~~~~p~gvnl~~~~~~~~~- 79 (332)
.+.++.|+++|||. |+|+..+...+.+.|+ ++..++ +.+.+ .........+. ..+.|++++++.+.+ ++.
T Consensus 5 ~~~~~~~~~lAPM~-g~td~~fR~l~~~~g~-~~~~te-mvs~~~~~~~~~~~~~~~~~~~~~~~~~vQl~g~~~-~~~~ 80 (321)
T PRK10415 5 QYQLRNRLIAAPMA-GITDRPFRTLCYEMGA-GLTVSE-MMSSNPQVWESDKSRLRMVHIDEPGIRTVQIAGSDP-KEMA 80 (321)
T ss_pred CccCCCCEEecCCC-CCCcHHHHHHHHHHCC-CEEEEc-cEEcchhhhcCHhHHHHhccCccCCCEEEEEeCCCH-HHHH
Confidence 45678899999998 8999999999988874 544332 22222 11111111111 123678899988766 333
Q ss_pred --HHHHHhcCCcEEEEccCCCcH-------------------HHHHHHHh-CCCEEEEecC---------CHHHHHHHHH
Q 020013 80 --IKAILSEKVAVLQVSWGEYSE-------------------ELVLEAHS-AGVKVVPQVG---------SFDEARKAVN 128 (332)
Q Consensus 80 --~~~~~~~~~~~I~~~~g~~~~-------------------~~i~~~~~-~g~~v~~~v~---------s~~~a~~a~~ 128 (332)
.+.+.+.++|+|.+++|+|.. ++++.+++ .++++..++. ..+-++.+.+
T Consensus 81 ~aa~~~~~~g~d~IdlN~gCP~~~v~~~g~Gs~ll~~p~~~~eiv~av~~a~d~pv~vKiR~G~~~~~~~~~~~a~~le~ 160 (321)
T PRK10415 81 DAARINVESGAQIIDINMGCPAKKVNRKLAGSALLQYPDLVKSILTEVVNAVDVPVTLKIRTGWAPEHRNCVEIAQLAED 160 (321)
T ss_pred HHHHHHHHCCCCEEEEeCCCCHHHHcCCCcccHHhcCHHHHHHHHHHHHHhcCCceEEEEEccccCCcchHHHHHHHHHH
Confidence 344456789999999998632 12233333 3566665441 2344566788
Q ss_pred cCCCEEEEecCCCC-cccCCCCchhhhHHHHHHHhCCCCCcEEeecCcCCHHHHHHHHH-cCcceeeeccccccCcc
Q 020013 129 AGVDAIIVQGREAG-GHVIGQDGLISLLPMVVDLIGDRDIPIIAAGGIVDARGYVAALS-LGAQGICLGTRFVASEE 203 (332)
Q Consensus 129 ~g~D~ivv~G~eaG-Gh~~~~~~~~~ll~~i~~~~~~~~iPviaaGGI~~~~~v~~al~-~GA~gV~~GT~fl~t~E 203 (332)
.|+|.|.+.|.... .+. + ...+.++.++++.+ ++|||+.|||.+++++.+++. .|||+|++|++++..+.
T Consensus 161 ~G~d~i~vh~rt~~~~~~-G-~a~~~~i~~ik~~~---~iPVI~nGgI~s~~da~~~l~~~gadgVmiGR~~l~nP~ 232 (321)
T PRK10415 161 CGIQALTIHGRTRACLFN-G-EAEYDSIRAVKQKV---SIPVIANGDITDPLKARAVLDYTGADALMIGRAAQGRPW 232 (321)
T ss_pred hCCCEEEEecCccccccC-C-CcChHHHHHHHHhc---CCcEEEeCCCCCHHHHHHHHhccCCCEEEEChHhhcCCh
Confidence 99999999887532 222 2 24588899998887 799999999999999999997 69999999999998653
|
|
| >TIGR01303 IMP_DH_rel_1 IMP dehydrogenase family protein | Back alignment and domain information |
|---|
Probab=99.61 E-value=5e-14 Score=137.96 Aligned_cols=128 Identities=25% Similarity=0.303 Sum_probs=92.5
Q ss_pred HHHHHHHhcCCcEEEEc--cCCCcH---HHHHHHHhC--CCEEEEe-cCCHHHHHHHHHcCCCEEEEecCCCCcccC---
Q 020013 78 ENIKAILSEKVAVLQVS--WGEYSE---ELVLEAHSA--GVKVVPQ-VGSFDEARKAVNAGVDAIIVQGREAGGHVI--- 146 (332)
Q Consensus 78 ~~~~~~~~~~~~~I~~~--~g~~~~---~~i~~~~~~--g~~v~~~-v~s~~~a~~a~~~g~D~ivv~G~eaGGh~~--- 146 (332)
+.++.+.+.++++|.+. .|. +. +.++.+|+. +++|+.. +.|.+.++.+.++|+|+|.+-+. .|..+.
T Consensus 228 ~ra~~Lv~aGVd~i~~D~a~g~-~~~~~~~i~~i~~~~~~~~vi~g~~~t~~~~~~l~~~G~d~i~vg~g-~Gs~~ttr~ 305 (475)
T TIGR01303 228 GKAKALLDAGVDVLVIDTAHGH-QVKMISAIKAVRALDLGVPIVAGNVVSAEGVRDLLEAGANIIKVGVG-PGAMCTTRM 305 (475)
T ss_pred HHHHHHHHhCCCEEEEeCCCCC-cHHHHHHHHHHHHHCCCCeEEEeccCCHHHHHHHHHhCCCEEEECCc-CCccccCcc
Confidence 45667778899998763 233 33 456677765 7888876 88999999999999999987221 111110
Q ss_pred --C-CCchhhhHHHHHHHhCCCCCcEEeecCcCCHHHHHHHHHcCcceeeeccccccCccCCCC
Q 020013 147 --G-QDGLISLLPMVVDLIGDRDIPIIAAGGIVDARGYVAALSLGAQGICLGTRFVASEESYAH 207 (332)
Q Consensus 147 --~-~~~~~~ll~~i~~~~~~~~iPviaaGGI~~~~~v~~al~~GA~gV~~GT~fl~t~Es~~~ 207 (332)
+ ..+....+-++.++....++|||+.|||.++.|+.++|++||+.|++|+.|..|.|||..
T Consensus 306 ~~~~g~~~~~a~~~~~~~~~~~~~~viadGgi~~~~di~kala~GA~~vm~g~~~ag~~espg~ 369 (475)
T TIGR01303 306 MTGVGRPQFSAVLECAAEARKLGGHVWADGGVRHPRDVALALAAGASNVMVGSWFAGTYESPGD 369 (475)
T ss_pred ccCCCCchHHHHHHHHHHHHHcCCcEEEeCCCCCHHHHHHHHHcCCCEEeechhhcccccCCCc
Confidence 0 113333344444333323799999999999999999999999999999999999999764
|
This model represents a family of proteins, often annotated as a putative IMP dehydrogenase, related to IMP dehydrogenase and GMP reductase and restricted to the high GC Gram-positive bacteria. All species in which a member is found so far (Corynebacterium glutamicum, Mycobacterium tuberculosis, Streptomyces coelicolor, etc.) also have IMP dehydrogenase as described by TIGRFAMs entry TIGR01302. |
| >PLN02535 glycolate oxidase | Back alignment and domain information |
|---|
Probab=99.58 E-value=2.2e-13 Score=128.62 Aligned_cols=113 Identities=24% Similarity=0.352 Sum_probs=90.8
Q ss_pred HHHHHh-CCCEEE-EecCCHHHHHHHHHcCCCEEEEecCCCCcccCCCCchhhhHHHHHHHhCCCCCcEEeecCcCCHHH
Q 020013 103 VLEAHS-AGVKVV-PQVGSFDEARKAVNAGVDAIIVQGREAGGHVIGQDGLISLLPMVVDLIGDRDIPIIAAGGIVDARG 180 (332)
Q Consensus 103 i~~~~~-~g~~v~-~~v~s~~~a~~a~~~g~D~ivv~G~eaGGh~~~~~~~~~ll~~i~~~~~~~~iPviaaGGI~~~~~ 180 (332)
++.+++ .+.+++ ..|.++++++.+.+.|+|+|++.|.+ |.+.+...+++..++++++.+.. ++|||++|||.++.|
T Consensus 215 i~~lr~~~~~PvivKgV~~~~dA~~a~~~GvD~I~vsn~G-Gr~~d~~~~t~~~L~ev~~av~~-~ipVi~dGGIr~g~D 292 (364)
T PLN02535 215 IEWLRSITNLPILIKGVLTREDAIKAVEVGVAGIIVSNHG-ARQLDYSPATISVLEEVVQAVGG-RVPVLLDGGVRRGTD 292 (364)
T ss_pred HHHHHhccCCCEEEecCCCHHHHHHHHhcCCCEEEEeCCC-cCCCCCChHHHHHHHHHHHHHhc-CCCEEeeCCCCCHHH
Confidence 344444 345554 55889999999999999999998874 22222234568889999887643 699999999999999
Q ss_pred HHHHHHcCcceeeeccccccCccCCCCHHHHHHHhcC
Q 020013 181 YVAALSLGAQGICLGTRFVASEESYAHPEYKRKLVEM 217 (332)
Q Consensus 181 v~~al~~GA~gV~~GT~fl~t~Es~~~~~~k~~~~~~ 217 (332)
+.++|++||++|++|+.|+...++...+.+++.+...
T Consensus 293 v~KALalGA~aV~vGr~~l~~l~~~g~~gv~~~l~~l 329 (364)
T PLN02535 293 VFKALALGAQAVLVGRPVIYGLAAKGEDGVRKVIEML 329 (364)
T ss_pred HHHHHHcCCCEEEECHHHHhhhhhccHHHHHHHHHHH
Confidence 9999999999999999999998888888888887654
|
|
| >PF04131 NanE: Putative N-acetylmannosamine-6-phosphate epimerase; InterPro: IPR007260 This family represents a putative ManNAc-6-P-to-GlcNAc-6P epimerase in the N-acetylmannosamine (ManNAc) utilization pathway found mainly in pathogenic bacteria for the reaction: |
Back alignment and domain information |
|---|
Probab=99.58 E-value=1.6e-13 Score=116.33 Aligned_cols=163 Identities=23% Similarity=0.369 Sum_probs=111.0
Q ss_pred HHHHHHHhCCCceeecCCCCCCHHHHHHHHHHHHhhcCCcEEEEeec---------CCCCHHHHHHHHhcCCcEEEEccC
Q 020013 26 ELVAAVANAGGLGLLRAPDWEAPDYLRDLIRKTRSLTERPFGVGVVL---------AFPHNENIKAILSEKVAVLQVSWG 96 (332)
Q Consensus 26 ~la~avs~aGglG~i~~~~~~~~e~~~~~i~~~r~~~~~p~gvnl~~---------~~~~~~~~~~~~~~~~~~I~~~~g 96 (332)
.||.++...|..|+=. .+++. ++.+|+.++.|+- +++- -.|..+.++.+.+.|+|+|.+..-
T Consensus 3 ~mA~Aa~~gGA~giR~----~~~~d----I~aik~~v~lPII-Gi~K~~y~~~~V~ITPT~~ev~~l~~aGadIIAlDaT 73 (192)
T PF04131_consen 3 RMAKAAEEGGAVGIRA----NGVED----IRAIKKAVDLPII-GIIKRDYPDSDVYITPTLKEVDALAEAGADIIALDAT 73 (192)
T ss_dssp HHHHHHHHCT-SEEEE----ESHHH----HHHHHTTB-S-EE-EE-B-SBTTSS--BS-SHHHHHHHHHCT-SEEEEE-S
T ss_pred HHHHHHHHCCceEEEc----CCHHH----HHHHHHhcCCCEE-EEEeccCCCCCeEECCCHHHHHHHHHcCCCEEEEecC
Confidence 5677776666666532 25655 6677777788742 2221 123467788899999999988632
Q ss_pred C-----CcHHHHHHHHhCCCEEEEecCCHHHHHHHHHcCCCEEEE--ecCCCCcccCCCCchhhhHHHHHHHhCCCCCcE
Q 020013 97 E-----YSEELVLEAHSAGVKVVPQVGSFDEARKAVNAGVDAIIV--QGREAGGHVIGQDGLISLLPMVVDLIGDRDIPI 169 (332)
Q Consensus 97 ~-----~~~~~i~~~~~~g~~v~~~v~s~~~a~~a~~~g~D~ivv--~G~eaGGh~~~~~~~~~ll~~i~~~~~~~~iPv 169 (332)
. ...++++.+|+.+..++..|+|.+|++.+.++|+|+|-- .|+.. .+.+..+.+.|+.++++. ++||
T Consensus 74 ~R~Rp~~l~~li~~i~~~~~l~MADist~ee~~~A~~~G~D~I~TTLsGYT~--~t~~~~pD~~lv~~l~~~----~~pv 147 (192)
T PF04131_consen 74 DRPRPETLEELIREIKEKYQLVMADISTLEEAINAAELGFDIIGTTLSGYTP--YTKGDGPDFELVRELVQA----DVPV 147 (192)
T ss_dssp SSS-SS-HHHHHHHHHHCTSEEEEE-SSHHHHHHHHHTT-SEEE-TTTTSST--TSTTSSHHHHHHHHHHHT----TSEE
T ss_pred CCCCCcCHHHHHHHHHHhCcEEeeecCCHHHHHHHHHcCCCEEEcccccCCC--CCCCCCCCHHHHHHHHhC----CCcE
Confidence 1 234788899999999999999999999999999999965 23311 111234679999998874 6999
Q ss_pred EeecCcCCHHHHHHHHHcCcceeeeccccccCcc
Q 020013 170 IAAGGIVDARGYVAALSLGAQGICLGTRFVASEE 203 (332)
Q Consensus 170 iaaGGI~~~~~v~~al~~GA~gV~~GT~fl~t~E 203 (332)
|+-|+|++++++.++|.+||++|++||++-..++
T Consensus 148 IaEGri~tpe~a~~al~~GA~aVVVGsAITrP~~ 181 (192)
T PF04131_consen 148 IAEGRIHTPEQAAKALELGAHAVVVGSAITRPQE 181 (192)
T ss_dssp EEESS--SHHHHHHHHHTT-SEEEE-HHHH-HHH
T ss_pred eecCCCCCHHHHHHHHhcCCeEEEECcccCCHHH
Confidence 9999999999999999999999999999765543
|
; GO: 0047465 N-acylglucosamine-6-phosphate 2-epimerase activity, 0006051 N-acetylmannosamine metabolic process; PDB: 1Y0E_B 3IGS_A 1YXY_A 3Q58_B. |
| >KOG2550 consensus IMP dehydrogenase/GMP reductase [Nucleotide transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.57 E-value=4.3e-14 Score=131.03 Aligned_cols=130 Identities=24% Similarity=0.375 Sum_probs=94.7
Q ss_pred HHHHHHHHhcCCcEEEEc--cCC--CcHHHHHHHHhC--CCEEE-EecCCHHHHHHHHHcCCCEEEEecCCCCcccCCC-
Q 020013 77 NENIKAILSEKVAVLQVS--WGE--YSEELVLEAHSA--GVKVV-PQVGSFDEARKAVNAGVDAIIVQGREAGGHVIGQ- 148 (332)
Q Consensus 77 ~~~~~~~~~~~~~~I~~~--~g~--~~~~~i~~~~~~--g~~v~-~~v~s~~~a~~a~~~g~D~ivv~G~eaGGh~~~~- 148 (332)
...++.+.+.++|+|.+. .|. +..+.++.+++. ...|+ ..|-+.+.++....+|+|++-+ |...|.++..+
T Consensus 253 K~rl~ll~~aGvdvviLDSSqGnS~~qiemik~iK~~yP~l~ViaGNVVT~~qa~nLI~aGaDgLrV-GMGsGSiCiTqe 331 (503)
T KOG2550|consen 253 KERLDLLVQAGVDVVILDSSQGNSIYQLEMIKYIKETYPDLQIIAGNVVTKEQAANLIAAGADGLRV-GMGSGSICITQK 331 (503)
T ss_pred hHHHHHhhhcCCcEEEEecCCCcchhHHHHHHHHHhhCCCceeeccceeeHHHHHHHHHccCceeEe-ccccCceeeece
Confidence 345677888999999884 343 223567777764 45555 4677889999999999999987 55555543111
Q ss_pred -----CchhhhHHHHHHHhCCCCCcEEeecCcCCHHHHHHHHHcCcceeeeccccccCccCCCC
Q 020013 149 -----DGLISLLPMVVDLIGDRDIPIIAAGGIVDARGYVAALSLGAQGICLGTRFVASEESYAH 207 (332)
Q Consensus 149 -----~~~~~ll~~i~~~~~~~~iPviaaGGI~~~~~v~~al~~GA~gV~~GT~fl~t~Es~~~ 207 (332)
.+-...+-++.+...+.++|||+.|||.+..++.++|.+||+.|+||+-+..+.|++..
T Consensus 332 vma~GrpQ~TAVy~va~~A~q~gvpviADGGiq~~Ghi~KAl~lGAstVMmG~lLAgtTEapGe 395 (503)
T KOG2550|consen 332 VMACGRPQGTAVYKVAEFANQFGVPCIADGGIQNVGHVVKALGLGASTVMMGGLLAGTTEAPGE 395 (503)
T ss_pred eeeccCCcccchhhHHHHHHhcCCceeecCCcCccchhHhhhhcCchhheecceeeeeeccCcc
Confidence 11122344444443334899999999999999999999999999999999999999863
|
|
| >cd04740 DHOD_1B_like Dihydroorotate dehydrogenase (DHOD) class 1B FMN-binding domain | Back alignment and domain information |
|---|
Probab=99.56 E-value=4.8e-13 Score=124.41 Aligned_cols=187 Identities=19% Similarity=0.227 Sum_probs=128.9
Q ss_pred CccceecCCCCCCCCcHHHHHHHHhCCCceeecCCCC--------C--------------------CHHHHHHHHHHHHh
Q 020013 9 FEYGIVQAPLGPDISGPELVAAVANAGGLGLLRAPDW--------E--------------------APDYLRDLIRKTRS 60 (332)
Q Consensus 9 ~~~Pii~apM~~g~s~~~la~avs~aGglG~i~~~~~--------~--------------------~~e~~~~~i~~~r~ 60 (332)
++.||+.+.= ..++.+........|++|++..++. . .++...+.+...+.
T Consensus 9 ~~nP~~~aag--~~~~~~~~~~~~~~g~~g~v~~~ti~~~~~~~~~~p~~~~~~~~~~n~~g~~~~g~~~~~~~~~~~~~ 86 (296)
T cd04740 9 LKNPVILASG--TFGFGEELSRVADLGKLGAIVTKSITLEPREGNPPPRVVETPGGMLNAIGLQNPGVEAFLEELLPWLR 86 (296)
T ss_pred cCCCCEECCC--CCCCHHHHHHHHhcCCceEEEECCcCCCCCCCCCCCeEEecCcceeeecCCCCcCHHHHHHHHHHHhh
Confidence 6679998742 2346667777778888888854321 0 01333344444444
Q ss_pred hcCCcEEEEeecCCCC--HHHHHHHHhcCCcEEEEccCCCc---------------HHHHHHHHhC-CCEEEEecC----
Q 020013 61 LTERPFGVGVVLAFPH--NENIKAILSEKVAVLQVSWGEYS---------------EELVLEAHSA-GVKVVPQVG---- 118 (332)
Q Consensus 61 ~~~~p~gvnl~~~~~~--~~~~~~~~~~~~~~I~~~~g~~~---------------~~~i~~~~~~-g~~v~~~v~---- 118 (332)
..+.|+++|+...... .+..+.+.+.|+|.|.+++++|. .++++.+++. +++|+.+++
T Consensus 87 ~~~~p~ivsi~g~~~~~~~~~a~~~~~~G~d~iElN~~cP~~~~~g~~~~~~~~~~~eiv~~vr~~~~~Pv~vKl~~~~~ 166 (296)
T cd04740 87 EFGTPVIASIAGSTVEEFVEVAEKLADAGADAIELNISCPNVKGGGMAFGTDPEAVAEIVKAVKKATDVPVIVKLTPNVT 166 (296)
T ss_pred cCCCcEEEEEecCCHHHHHHHHHHHHHcCCCEEEEECCCCCCCCCcccccCCHHHHHHHHHHHHhccCCCEEEEeCCCch
Confidence 4578999999876531 23345556678999999876431 1456677766 788887765
Q ss_pred -CHHHHHHHHHcCCCEEEEecCCCC-----------------cccCCC---CchhhhHHHHHHHhCCCCCcEEeecCcCC
Q 020013 119 -SFDEARKAVNAGVDAIIVQGREAG-----------------GHVIGQ---DGLISLLPMVVDLIGDRDIPIIAAGGIVD 177 (332)
Q Consensus 119 -s~~~a~~a~~~g~D~ivv~G~eaG-----------------Gh~~~~---~~~~~ll~~i~~~~~~~~iPviaaGGI~~ 177 (332)
..+.++.+.+.|+|+|++.+...| |.. ++ ...+.++.++++.+ ++|||+.|||.+
T Consensus 167 ~~~~~a~~~~~~G~d~i~~~nt~~g~~~~~~~~~~~~~~~~gg~s-g~~~~~~~~~~i~~i~~~~---~ipii~~GGI~~ 242 (296)
T cd04740 167 DIVEIARAAEEAGADGLTLINTLKGMAIDIETRKPILGNVTGGLS-GPAIKPIALRMVYQVYKAV---EIPIIGVGGIAS 242 (296)
T ss_pred hHHHHHHHHHHcCCCEEEEECCCcccccccccCceeecCCcceec-CcccchHHHHHHHHHHHhc---CCCEEEECCCCC
Confidence 124466788899999998654322 221 11 11356777877776 799999999999
Q ss_pred HHHHHHHHHcCcceeeeccccccC
Q 020013 178 ARGYVAALSLGAQGICLGTRFVAS 201 (332)
Q Consensus 178 ~~~v~~al~~GA~gV~~GT~fl~t 201 (332)
++++.+++.+|||+|++||+++..
T Consensus 243 ~~da~~~l~~GAd~V~igra~l~~ 266 (296)
T cd04740 243 GEDALEFLMAGASAVQVGTANFVD 266 (296)
T ss_pred HHHHHHHHHcCCCEEEEchhhhcC
Confidence 999999999999999999999984
|
DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively. |
| >cd04737 LOX_like_FMN L-Lactate oxidase (LOX) FMN-binding domain | Back alignment and domain information |
|---|
Probab=99.55 E-value=3.9e-13 Score=126.72 Aligned_cols=99 Identities=25% Similarity=0.398 Sum_probs=81.2
Q ss_pred HHHHHHHh-CCCEEEEe-cCCHHHHHHHHHcCCCEEEEecCCCCccc-CCCCchhhhHHHHHHHhCCCCCcEEeecCcCC
Q 020013 101 ELVLEAHS-AGVKVVPQ-VGSFDEARKAVNAGVDAIIVQGREAGGHV-IGQDGLISLLPMVVDLIGDRDIPIIAAGGIVD 177 (332)
Q Consensus 101 ~~i~~~~~-~g~~v~~~-v~s~~~a~~a~~~g~D~ivv~G~eaGGh~-~~~~~~~~ll~~i~~~~~~~~iPviaaGGI~~ 177 (332)
+.++.+++ .+.+|+.+ +.++++++.+.+.|+|+|+++|. ||+. ++...++..++++++++.. ++|||++|||.+
T Consensus 211 ~~l~~lr~~~~~PvivKgv~~~~dA~~a~~~G~d~I~vsnh--GGr~ld~~~~~~~~l~~i~~a~~~-~i~vi~dGGIr~ 287 (351)
T cd04737 211 ADIEFIAKISGLPVIVKGIQSPEDADVAINAGADGIWVSNH--GGRQLDGGPASFDSLPEIAEAVNH-RVPIIFDSGVRR 287 (351)
T ss_pred HHHHHHHHHhCCcEEEecCCCHHHHHHHHHcCCCEEEEeCC--CCccCCCCchHHHHHHHHHHHhCC-CCeEEEECCCCC
Confidence 34455554 46777766 88999999999999999999886 4554 2334568889999888743 699999999999
Q ss_pred HHHHHHHHHcCcceeeeccccccCc
Q 020013 178 ARGYVAALSLGAQGICLGTRFVASE 202 (332)
Q Consensus 178 ~~~v~~al~~GA~gV~~GT~fl~t~ 202 (332)
+.|+.++|++||++|++|+.|+..-
T Consensus 288 g~Di~kaLalGA~~V~iGr~~l~~l 312 (351)
T cd04737 288 GEHVFKALASGADAVAVGRPVLYGL 312 (351)
T ss_pred HHHHHHHHHcCCCEEEECHHHHHHH
Confidence 9999999999999999999999764
|
LOX is a member of the family of FMN-containing alpha-hydroxyacid oxidases and catalyzes the oxidation of l-lactate using molecular oxygen to generate pyruvate and H2O2. This family occurs in both prokaryotes and eukaryotes. Members of this family include flavocytochrome b2 (FCB2), glycolate oxidase (GOX), lactate monooxygenase (LMO), mandelate dehydrogenase (MDH), and long chain hydroxyacid oxidase (LCHAO). |
| >PRK06552 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional | Back alignment and domain information |
|---|
Probab=99.55 E-value=2.3e-13 Score=119.93 Aligned_cols=171 Identities=16% Similarity=0.253 Sum_probs=133.0
Q ss_pred ccceecCCCCCCCCcHHHHHHHHhC---CCceeecCCCCCCHHHHHHHHHHHHhhc----CCcEEEEeecCCCCHHHHHH
Q 020013 10 EYGIVQAPLGPDISGPELVAAVANA---GGLGLLRAPDWEAPDYLRDLIRKTRSLT----ERPFGVGVVLAFPHNENIKA 82 (332)
Q Consensus 10 ~~Pii~apM~~g~s~~~la~avs~a---GglG~i~~~~~~~~e~~~~~i~~~r~~~----~~p~gvnl~~~~~~~~~~~~ 82 (332)
+.|++ |.- ...+++.+..++++ ||+.++.. .+.+++. .+.++++++.. +..+|++-+.+ .++++.
T Consensus 12 ~~~vi--~vi-r~~~~~~a~~~~~al~~~Gi~~iEi-t~~~~~a-~~~i~~l~~~~~~~p~~~vGaGTV~~---~~~~~~ 83 (213)
T PRK06552 12 ANGVV--AVV-RGESKEEALKISLAVIKGGIKAIEV-TYTNPFA-SEVIKELVELYKDDPEVLIGAGTVLD---AVTARL 83 (213)
T ss_pred HCCEE--EEE-ECCCHHHHHHHHHHHHHCCCCEEEE-ECCCccH-HHHHHHHHHHcCCCCCeEEeeeeCCC---HHHHHH
Confidence 45666 553 35677776666654 89999977 4667764 45566666543 24578877764 678999
Q ss_pred HHhcCCcEEEEccCCCcHHHHHHHHhCCCEEEEecCCHHHHHHHHHcCCCEEEEecCCCCcccCCCCchhhhHHHHHHHh
Q 020013 83 ILSEKVAVLQVSWGEYSEELVLEAHSAGVKVVPQVGSFDEARKAVNAGVDAIIVQGREAGGHVIGQDGLISLLPMVVDLI 162 (332)
Q Consensus 83 ~~~~~~~~I~~~~g~~~~~~i~~~~~~g~~v~~~v~s~~~a~~a~~~g~D~ivv~G~eaGGh~~~~~~~~~ll~~i~~~~ 162 (332)
+.+.|++++... + ..+++++.+++.++++++.+.|+.|+..+.+.|+|+|.+...+.. + ...++.++..+
T Consensus 84 a~~aGA~FivsP-~-~~~~v~~~~~~~~i~~iPG~~T~~E~~~A~~~Gad~vklFPa~~~-------G-~~~ik~l~~~~ 153 (213)
T PRK06552 84 AILAGAQFIVSP-S-FNRETAKICNLYQIPYLPGCMTVTEIVTALEAGSEIVKLFPGSTL-------G-PSFIKAIKGPL 153 (213)
T ss_pred HHHcCCCEEECC-C-CCHHHHHHHHHcCCCEECCcCCHHHHHHHHHcCCCEEEECCcccC-------C-HHHHHHHhhhC
Confidence 999999999877 3 367899999999999999999999999999999999998432211 1 45567776666
Q ss_pred CCCCCcEEeecCcCCHHHHHHHHHcCcceeeeccccccC
Q 020013 163 GDRDIPIIAAGGIVDARGYVAALSLGAQGICLGTRFVAS 201 (332)
Q Consensus 163 ~~~~iPviaaGGI~~~~~v~~al~~GA~gV~~GT~fl~t 201 (332)
+ ++|+++.||| +.+|+.+++++|++++.+||.++..
T Consensus 154 p--~ip~~atGGI-~~~N~~~~l~aGa~~vavgs~l~~~ 189 (213)
T PRK06552 154 P--QVNVMVTGGV-NLDNVKDWFAAGADAVGIGGELNKL 189 (213)
T ss_pred C--CCEEEEECCC-CHHHHHHHHHCCCcEEEEchHHhCc
Confidence 3 5999999999 8999999999999999999999754
|
|
| >PLN02493 probable peroxisomal (S)-2-hydroxy-acid oxidase | Back alignment and domain information |
|---|
Probab=99.54 E-value=4.6e-13 Score=126.30 Aligned_cols=111 Identities=28% Similarity=0.323 Sum_probs=88.1
Q ss_pred HHHHh-CCCEE-EEecCCHHHHHHHHHcCCCEEEEecCCCCcccCCCCchhhhHHHHHHHhCCCCCcEEeecCcCCHHHH
Q 020013 104 LEAHS-AGVKV-VPQVGSFDEARKAVNAGVDAIIVQGREAGGHVIGQDGLISLLPMVVDLIGDRDIPIIAAGGIVDARGY 181 (332)
Q Consensus 104 ~~~~~-~g~~v-~~~v~s~~~a~~a~~~g~D~ivv~G~eaGGh~~~~~~~~~ll~~i~~~~~~~~iPviaaGGI~~~~~v 181 (332)
+.+++ .+.+| +..|.+.++++.+.+.|+|+|++.|.++ .+.+...+++..++++++.+.. ++|||++|||.++.|+
T Consensus 217 ~wlr~~~~~PiivKgV~~~~dA~~a~~~Gvd~I~VsnhGG-rqld~~~~t~~~L~ei~~av~~-~~~vi~dGGIr~G~Dv 294 (367)
T PLN02493 217 QWLQTITKLPILVKGVLTGEDARIAIQAGAAGIIVSNHGA-RQLDYVPATISALEEVVKATQG-RIPVFLDGGVRRGTDV 294 (367)
T ss_pred HHHHhccCCCEEeecCCCHHHHHHHHHcCCCEEEECCCCC-CCCCCchhHHHHHHHHHHHhCC-CCeEEEeCCcCcHHHH
Confidence 44444 34554 4668899999999999999999988842 2333334678999999887743 6999999999999999
Q ss_pred HHHHHcCcceeeeccccccCccCCCCHHHHHHHhc
Q 020013 182 VAALSLGAQGICLGTRFVASEESYAHPEYKRKLVE 216 (332)
Q Consensus 182 ~~al~~GA~gV~~GT~fl~t~Es~~~~~~k~~~~~ 216 (332)
.++|++||++|.+|+.|+..-++...+...+.+..
T Consensus 295 ~KALALGA~aV~iGr~~l~~l~~~G~~gv~~~l~~ 329 (367)
T PLN02493 295 FKALALGASGIFIGRPVVFSLAAEGEAGVRKVLQM 329 (367)
T ss_pred HHHHHcCCCEEEEcHHHHHHHHhcCHHHHHHHHHH
Confidence 99999999999999999988887777765554443
|
|
| >PLN02979 glycolate oxidase | Back alignment and domain information |
|---|
Probab=99.54 E-value=6.4e-13 Score=124.41 Aligned_cols=112 Identities=28% Similarity=0.308 Sum_probs=88.6
Q ss_pred HHHHHh-CCCEEE-EecCCHHHHHHHHHcCCCEEEEecCCCCcccCCCCchhhhHHHHHHHhCCCCCcEEeecCcCCHHH
Q 020013 103 VLEAHS-AGVKVV-PQVGSFDEARKAVNAGVDAIIVQGREAGGHVIGQDGLISLLPMVVDLIGDRDIPIIAAGGIVDARG 180 (332)
Q Consensus 103 i~~~~~-~g~~v~-~~v~s~~~a~~a~~~g~D~ivv~G~eaGGh~~~~~~~~~ll~~i~~~~~~~~iPviaaGGI~~~~~ 180 (332)
++.+++ .+++++ ..|.+.++|+++.+.|+|+|++.|.++... +...+++..++++++.+.. ++|||++|||.++.|
T Consensus 215 l~wlr~~~~~PvivKgV~~~~dA~~a~~~Gvd~I~VsnhGGrql-d~~p~t~~~L~ei~~~~~~-~~~Vi~dGGIr~G~D 292 (366)
T PLN02979 215 VQWLQTITKLPILVKGVLTGEDARIAIQAGAAGIIVSNHGARQL-DYVPATISALEEVVKATQG-RIPVFLDGGVRRGTD 292 (366)
T ss_pred HHHHHhccCCCEEeecCCCHHHHHHHHhcCCCEEEECCCCcCCC-CCchhHHHHHHHHHHHhCC-CCeEEEeCCcCcHHH
Confidence 445554 355554 668899999999999999999988843332 2234678899999887643 699999999999999
Q ss_pred HHHHHHcCcceeeeccccccCccCCCCHHHHHHHhc
Q 020013 181 YVAALSLGAQGICLGTRFVASEESYAHPEYKRKLVE 216 (332)
Q Consensus 181 v~~al~~GA~gV~~GT~fl~t~Es~~~~~~k~~~~~ 216 (332)
+.++|++||++|.+|+.|+..-+...++...+.+..
T Consensus 293 i~KALALGAdaV~iGrp~L~~la~~G~~Gv~~~l~~ 328 (366)
T PLN02979 293 VFKALALGASGIFIGRPVVFSLAAEGEAGVRKVLQM 328 (366)
T ss_pred HHHHHHcCCCEEEEcHHHHHHHHhcCHHHHHHHHHH
Confidence 999999999999999999988877777765555444
|
|
| >PRK09140 2-dehydro-3-deoxy-6-phosphogalactonate aldolase; Reviewed | Back alignment and domain information |
|---|
Probab=99.54 E-value=5.2e-13 Score=117.33 Aligned_cols=180 Identities=21% Similarity=0.277 Sum_probs=133.8
Q ss_pred CcchhhcCCccceecCCCCCCCCcHHHHHHHHh---CCCceeecCCCCCCHHHHHHHHHHHHhhc--CCcEEEEeecCCC
Q 020013 1 MGWRGMLGFEYGIVQAPLGPDISGPELVAAVAN---AGGLGLLRAPDWEAPDYLRDLIRKTRSLT--ERPFGVGVVLAFP 75 (332)
Q Consensus 1 ~~~~~~l~~~~Pii~apM~~g~s~~~la~avs~---aGglG~i~~~~~~~~e~~~~~i~~~r~~~--~~p~gvnl~~~~~ 75 (332)
|.+...|. +.|++ |.- ...+++.+..+++ .||+.++.. ++.+++.. +.++.+++.. +..+|++-++.
T Consensus 1 ~~~~~~l~-~~~~~--~v~-r~~~~~~~~~~~~a~~~gGi~~iEv-t~~~~~~~-~~i~~l~~~~~~~~~iGaGTV~~-- 72 (206)
T PRK09140 1 MRLMQPFT-KLPLI--AIL-RGITPDEALAHVGALIEAGFRAIEI-PLNSPDPF-DSIAALVKALGDRALIGAGTVLS-- 72 (206)
T ss_pred CchhhHHH-hCCEE--EEE-eCCCHHHHHHHHHHHHHCCCCEEEE-eCCCccHH-HHHHHHHHHcCCCcEEeEEecCC--
Confidence 55665554 45555 443 2445555555554 488999987 45666543 4566665433 24577776664
Q ss_pred CHHHHHHHHhcCCcEEEEccCCCcHHHHHHHHhCCCEEEEecCCHHHHHHHHHcCCCEEEEecCCCCcccCCCCchhhhH
Q 020013 76 HNENIKAILSEKVAVLQVSWGEYSEELVLEAHSAGVKVVPQVGSFDEARKAVNAGVDAIIVQGREAGGHVIGQDGLISLL 155 (332)
Q Consensus 76 ~~~~~~~~~~~~~~~I~~~~g~~~~~~i~~~~~~g~~v~~~v~s~~~a~~a~~~g~D~ivv~G~eaGGh~~~~~~~~~ll 155 (332)
.+.++.+.+.|++++++.. ...++.+..+..++.+++.+.|++|+..+.+.|+|+|.+... .. .....+
T Consensus 73 -~~~~~~a~~aGA~fivsp~--~~~~v~~~~~~~~~~~~~G~~t~~E~~~A~~~Gad~vk~Fpa-------~~-~G~~~l 141 (206)
T PRK09140 73 -PEQVDRLADAGGRLIVTPN--TDPEVIRRAVALGMVVMPGVATPTEAFAALRAGAQALKLFPA-------SQ-LGPAGI 141 (206)
T ss_pred -HHHHHHHHHcCCCEEECCC--CCHHHHHHHHHCCCcEEcccCCHHHHHHHHHcCCCEEEECCC-------CC-CCHHHH
Confidence 6789999999999999873 356788989999999999999999999999999999987321 11 125567
Q ss_pred HHHHHHhCCCCCcEEeecCcCCHHHHHHHHHcCcceeeeccccccC
Q 020013 156 PMVVDLIGDRDIPIIAAGGIVDARGYVAALSLGAQGICLGTRFVAS 201 (332)
Q Consensus 156 ~~i~~~~~~~~iPviaaGGI~~~~~v~~al~~GA~gV~~GT~fl~t 201 (332)
+.++..++. ++|+++.||| +.+|+.+++++||++|.+||.++..
T Consensus 142 ~~l~~~~~~-~ipvvaiGGI-~~~n~~~~~~aGa~~vav~s~l~~~ 185 (206)
T PRK09140 142 KALRAVLPP-DVPVFAVGGV-TPENLAPYLAAGAAGFGLGSALYRP 185 (206)
T ss_pred HHHHhhcCC-CCeEEEECCC-CHHHHHHHHHCCCeEEEEehHhccc
Confidence 777665521 4999999999 9999999999999999999999764
|
|
| >cd00405 PRAI Phosphoribosylanthranilate isomerase (PRAI) catalyzes the fourth step of the tryptophan biosynthesis, the conversion of N-(5'- phosphoribosyl)-anthranilate (PRA) to 1-(o-carboxyphenylamino)- 1-deoxyribulose 5-phosphate (CdRP) | Back alignment and domain information |
|---|
Probab=99.53 E-value=6.5e-13 Score=116.82 Aligned_cols=170 Identities=25% Similarity=0.320 Sum_probs=119.9
Q ss_pred CCCcHHHHHHHHhCC--CceeecCCCCCCHHHH-HHHHHHHHhhcC-CcEEEEeecCCCCHHHHHHHHhcCCcEEEEccC
Q 020013 21 DISGPELVAAVANAG--GLGLLRAPDWEAPDYL-RDLIRKTRSLTE-RPFGVGVVLAFPHNENIKAILSEKVAVLQVSWG 96 (332)
Q Consensus 21 g~s~~~la~avs~aG--glG~i~~~~~~~~e~~-~~~i~~~r~~~~-~p~gvnl~~~~~~~~~~~~~~~~~~~~I~~~~g 96 (332)
|+++++.+..+.++| .+|++... .++..+ .+..+++++... .+..|.+++++..++..+.+.+.++|+|++|..
T Consensus 5 Gi~~~ed~~~a~~~Gvd~ig~i~~~--~s~R~v~~~~a~~l~~~~~~~~~~V~v~vn~~~~~i~~ia~~~~~d~Vqlhg~ 82 (203)
T cd00405 5 GITTLEDALAAAEAGADAIGFIFAP--KSPRYVSPEQAREIVAALPPFVKRVGVFVNEDLEEILEIAEELGLDVVQLHGD 82 (203)
T ss_pred CCCCHHHHHHHHHcCCCEEEEecCC--CCCCCCCHHHHHHHHHhCCCCCcEEEEEeCCCHHHHHHHHHhcCCCEEEECCC
Confidence 688999999898887 48888642 133333 333444444332 246788888876566677888899999999954
Q ss_pred CCcHHHHHHHHh-CCCEEE--EecCCHHHH--HHHHHcCCCEEEEecCCC---CcccCCCCchhhhHHHHHHHhCCCCCc
Q 020013 97 EYSEELVLEAHS-AGVKVV--PQVGSFDEA--RKAVNAGVDAIIVQGREA---GGHVIGQDGLISLLPMVVDLIGDRDIP 168 (332)
Q Consensus 97 ~~~~~~i~~~~~-~g~~v~--~~v~s~~~a--~~a~~~g~D~ivv~G~ea---GGh~~~~~~~~~ll~~i~~~~~~~~iP 168 (332)
.+.+.++.+++ .+.+++ ..+++..+. ..+...++|++++..... ||+ +....|.+++++. . ++|
T Consensus 83 -e~~~~~~~l~~~~~~~~i~~i~~~~~~~~~~~~~~~~~aD~il~dt~~~~~~Gg~--g~~~~~~~l~~~~--~---~~P 154 (203)
T cd00405 83 -ESPEYCAQLRARLGLPVIKAIRVKDEEDLEKAAAYAGEVDAILLDSKSGGGGGGT--GKTFDWSLLRGLA--S---RKP 154 (203)
T ss_pred -CCHHHHHHHHhhcCCcEEEEEecCChhhHHHhhhccccCCEEEEcCCCCCCCCCC--cceEChHHhhccc--c---CCC
Confidence 45667777775 355666 444444333 345667999999966433 232 3445678887765 3 689
Q ss_pred EEeecCcCCHHHHHHHHHcC-cceeeeccccccC
Q 020013 169 IIAAGGIVDARGYVAALSLG-AQGICLGTRFVAS 201 (332)
Q Consensus 169 viaaGGI~~~~~v~~al~~G-A~gV~~GT~fl~t 201 (332)
++++||| +++|+.+++..| ++||.+.|.+...
T Consensus 155 vilaGGI-~~~Nv~~~i~~~~~~gvdv~S~ie~~ 187 (203)
T cd00405 155 VILAGGL-TPDNVAEAIRLVRPYGVDVSSGVETS 187 (203)
T ss_pred EEEECCC-ChHHHHHHHHhcCCCEEEcCCcccCC
Confidence 9999999 999999999999 9999999998865
|
Most PRAIs are monomeric, monofunctional and thermolabile, but in some thermophile organisms PRAI is dimeric for reasons of stability and in others it is fused to other components of the tryptophan biosynthesis pathway to form multifunctional enzymes. |
| >TIGR00736 nifR3_rel_arch TIM-barrel protein, putative | Back alignment and domain information |
|---|
Probab=99.53 E-value=1.1e-12 Score=116.64 Aligned_cols=173 Identities=17% Similarity=0.201 Sum_probs=122.0
Q ss_pred CCCCCCcHHHHHHHHhCCCceeecCCCC--------------------C----CHHHHHHHHHHHHhhcCCcEEEEeecC
Q 020013 18 LGPDISGPELVAAVANAGGLGLLRAPDW--------------------E----APDYLRDLIRKTRSLTERPFGVGVVLA 73 (332)
Q Consensus 18 M~~g~s~~~la~avs~aGglG~i~~~~~--------------------~----~~e~~~~~i~~~r~~~~~p~gvnl~~~ 73 (332)
|+ |+++.+++......-|+-+|+..+. . ..+.+.+++.++++ +.|+.+|+-..
T Consensus 1 ma-g~~d~~~~~~~~~~~~~~~lgg~~~d~~t~~a~~~~~~rgr~ef~~~~e~~~~~i~~e~~~~~~--~~~vivnv~~~ 77 (231)
T TIGR00736 1 MA-GITDAEFCRKFKDLFAIVTLGGYNADRATYKASRDIEKRGRKEFSFNLEEFNSYIIEQIKKAES--RALVSVNVRFV 77 (231)
T ss_pred CC-CcchHHHHHhcCcCcCEEEECCccCCHHHHHHHHHHHHcCCcccCcCcccHHHHHHHHHHHHhh--cCCEEEEEecC
Confidence 66 6888888887655445555543211 0 12345566666653 56899998876
Q ss_pred CCCHHHHHH--HHhcCCcEEEEccCCCcH-------------------HHHHHHHhCCCEEEEecC-------CHHHHHH
Q 020013 74 FPHNENIKA--ILSEKVAVLQVSWGEYSE-------------------ELVLEAHSAGVKVVPQVG-------SFDEARK 125 (332)
Q Consensus 74 ~~~~~~~~~--~~~~~~~~I~~~~g~~~~-------------------~~i~~~~~~g~~v~~~v~-------s~~~a~~ 125 (332)
.+ ++..+. .++.++++|.+++|+|.+ ++++.+++.+++|..++. +++.++.
T Consensus 78 ~~-ee~~~~a~~v~~~~d~IdiN~gCP~~~v~~~g~G~~Ll~dp~~l~~iv~av~~~~~PVsvKiR~~~~~~~~~~~a~~ 156 (231)
T TIGR00736 78 DL-EEAYDVLLTIAEHADIIEINAHCRQPEITEIGIGQELLKNKELLKEFLTKMKELNKPIFVKIRGNCIPLDELIDALN 156 (231)
T ss_pred CH-HHHHHHHHHHhcCCCEEEEECCCCcHHHcCCCCchhhcCCHHHHHHHHHHHHcCCCcEEEEeCCCCCcchHHHHHHH
Confidence 55 333332 344589999999887542 234555666888887654 2356778
Q ss_pred HHHcCCCEEEEecCCCCcccCCCCchhhhHHHHHHHhCCCCCcEEeecCcCCHHHHHHHHHcCcceeeecccccc
Q 020013 126 AVNAGVDAIIVQGREAGGHVIGQDGLISLLPMVVDLIGDRDIPIIAAGGIVDARGYVAALSLGAQGICLGTRFVA 200 (332)
Q Consensus 126 a~~~g~D~ivv~G~eaGGh~~~~~~~~~ll~~i~~~~~~~~iPviaaGGI~~~~~v~~al~~GA~gV~~GT~fl~ 200 (332)
++++|+|+|.++....|+ ....|..++++++.++ ++|||+.|||.+.+++.+++..|||+|++|++.+.
T Consensus 157 l~~aGad~i~Vd~~~~g~----~~a~~~~I~~i~~~~~--~ipIIgNGgI~s~eda~e~l~~GAd~VmvgR~~l~ 225 (231)
T TIGR00736 157 LVDDGFDGIHVDAMYPGK----PYADMDLLKILSEEFN--DKIIIGNNSIDDIESAKEMLKAGADFVSVARAILK 225 (231)
T ss_pred HHHcCCCEEEEeeCCCCC----chhhHHHHHHHHHhcC--CCcEEEECCcCCHHHHHHHHHhCCCeEEEcHhhcc
Confidence 899999999997543221 1246899999998872 49999999999999999999999999999998774
|
Members of this family show a distant relationship by PSI-BLAST to alpha/beta (TIM) barrel enzymes such as dihydroorotate dehydrogenase and glycolate oxidase. At least two closely related but well-separable families among the bacteria, the nifR3/yhdG family and the yjbN family, share a more distant relationship to this family of shorter, exclusively archaeal proteins. |
| >PRK10550 tRNA-dihydrouridine synthase C; Provisional | Back alignment and domain information |
|---|
Probab=99.51 E-value=4.6e-13 Score=124.90 Aligned_cols=186 Identities=16% Similarity=0.206 Sum_probs=129.9
Q ss_pred ceecCCCCCCCCcHHHHHHHHhCCCceeecCCCCCCHH-------HHHHHHHHHH----hhcCCcEEEEeecCCCC--HH
Q 020013 12 GIVQAPLGPDISGPELVAAVANAGGLGLLRAPDWEAPD-------YLRDLIRKTR----SLTERPFGVGVVLAFPH--NE 78 (332)
Q Consensus 12 Pii~apM~~g~s~~~la~avs~aGglG~i~~~~~~~~e-------~~~~~i~~~r----~~~~~p~gvnl~~~~~~--~~ 78 (332)
|++.|||+ |+|+..+...+.+.|+.++..++ +.+.+ ....+...+. ...+.|+.++++.+.+. .+
T Consensus 2 ~~~lAPMa-g~td~~fR~l~~~~g~~~~~~te-mvs~~~~~~~~~~~~~~~~~~~~~~~~~~e~p~~vQl~g~~p~~~~~ 79 (312)
T PRK10550 2 RVLLAPME-GVLDSLVRELLTEVNDYDLCITE-FLRVVDQLLPVKVFHRLCPELHNASRTPSGTLVRIQLLGQYPQWLAE 79 (312)
T ss_pred CeEEECCC-CCcCHHHHHHHHHhCCCCEEEeC-CEEechhcccchhHHHHhHHhcccCCCCCCCcEEEEeccCCHHHHHH
Confidence 78999998 89999999998888877777654 33321 1111112221 12347999999998763 12
Q ss_pred HHHHHHhcCCcEEEEccCCCcHH-------------------HHHHHHhC---CCEEEEecC----C----HHHHHHHHH
Q 020013 79 NIKAILSEKVAVLQVSWGEYSEE-------------------LVLEAHSA---GVKVVPQVG----S----FDEARKAVN 128 (332)
Q Consensus 79 ~~~~~~~~~~~~I~~~~g~~~~~-------------------~i~~~~~~---g~~v~~~v~----s----~~~a~~a~~ 128 (332)
....+.+.+.|.|.+++|+|.+. +++.+++. +++|..++. + .+-++.+.+
T Consensus 80 aA~~~~~~g~d~IdiN~GCP~~~v~~~g~Gs~Ll~~~~~~~eiv~avr~~~~~~~pVsvKiR~g~~~~~~~~~~a~~l~~ 159 (312)
T PRK10550 80 NAARAVELGSWGVDLNCGCPSKTVNGSGGGATLLKDPELIYQGAKAMREAVPAHLPVTVKVRLGWDSGERKFEIADAVQQ 159 (312)
T ss_pred HHHHHHHcCCCEEEEeCCCCchHHhcCCCchHhhcCHHHHHHHHHHHHHhcCCCcceEEEEECCCCCchHHHHHHHHHHh
Confidence 23455667999999998886432 23333432 367776642 1 234556778
Q ss_pred cCCCEEEEecCCCC-cccCCCCchhhhHHHHHHHhCCCCCcEEeecCcCCHHHHHHHHH-cCcceeeeccccccCcc
Q 020013 129 AGVDAIIVQGREAG-GHVIGQDGLISLLPMVVDLIGDRDIPIIAAGGIVDARGYVAALS-LGAQGICLGTRFVASEE 203 (332)
Q Consensus 129 ~g~D~ivv~G~eaG-Gh~~~~~~~~~ll~~i~~~~~~~~iPviaaGGI~~~~~v~~al~-~GA~gV~~GT~fl~t~E 203 (332)
+|+|+|.+.+.... |.. ++...|..+.++++.+ ++|||+.|||.|++++.+++. .|||+|++|+.++..+.
T Consensus 160 ~Gvd~i~Vh~Rt~~~~y~-g~~~~~~~i~~ik~~~---~iPVi~nGdI~t~~da~~~l~~~g~DgVmiGRg~l~nP~ 232 (312)
T PRK10550 160 AGATELVVHGRTKEDGYR-AEHINWQAIGEIRQRL---TIPVIANGEIWDWQSAQQCMAITGCDAVMIGRGALNIPN 232 (312)
T ss_pred cCCCEEEECCCCCccCCC-CCcccHHHHHHHHhhc---CCcEEEeCCcCCHHHHHHHHhccCCCEEEEcHHhHhCcH
Confidence 99999999876432 222 2223578888998887 799999999999999999995 78999999999998753
|
|
| >cd04729 NanE N-acetylmannosamine-6-phosphate epimerase (NanE) converts N-acetylmannosamine-6-phosphate to N-acetylglucosamine-6-phosphate | Back alignment and domain information |
|---|
Probab=99.50 E-value=2.8e-12 Score=114.10 Aligned_cols=123 Identities=24% Similarity=0.339 Sum_probs=97.4
Q ss_pred HHHHHHHHhcCCcEEEEccC-------CCcHHHHHHHHhCC-CEEEEecCCHHHHHHHHHcCCCEEEEe--cCCCCcccC
Q 020013 77 NENIKAILSEKVAVLQVSWG-------EYSEELVLEAHSAG-VKVVPQVGSFDEARKAVNAGVDAIIVQ--GREAGGHVI 146 (332)
Q Consensus 77 ~~~~~~~~~~~~~~I~~~~g-------~~~~~~i~~~~~~g-~~v~~~v~s~~~a~~a~~~g~D~ivv~--G~eaGGh~~ 146 (332)
.++++.+.+.|+++|.+... ....++++.+++.+ +++++.+.+++++..+.+.|+|++.+. |.....+.
T Consensus 82 ~~~~~~a~~aGad~I~~~~~~~~~p~~~~~~~~i~~~~~~g~~~iiv~v~t~~ea~~a~~~G~d~i~~~~~g~t~~~~~- 160 (219)
T cd04729 82 IEEVDALAAAGADIIALDATDRPRPDGETLAELIKRIHEEYNCLLMADISTLEEALNAAKLGFDIIGTTLSGYTEETAK- 160 (219)
T ss_pred HHHHHHHHHcCCCEEEEeCCCCCCCCCcCHHHHHHHHHHHhCCeEEEECCCHHHHHHHHHcCCCEEEccCccccccccC-
Confidence 45788999999999887422 13457888888887 899999999999999999999999764 22221121
Q ss_pred CCCchhhhHHHHHHHhCCCCCcEEeecCcCCHHHHHHHHHcCcceeeeccccccCcc
Q 020013 147 GQDGLISLLPMVVDLIGDRDIPIIAAGGIVDARGYVAALSLGAQGICLGTRFVASEE 203 (332)
Q Consensus 147 ~~~~~~~ll~~i~~~~~~~~iPviaaGGI~~~~~v~~al~~GA~gV~~GT~fl~t~E 203 (332)
.....+.+++++++.+ ++||++.|||.+++++.+++.+|||+|++||+|+....
T Consensus 161 ~~~~~~~~l~~i~~~~---~ipvia~GGI~~~~~~~~~l~~GadgV~vGsal~~~~~ 214 (219)
T cd04729 161 TEDPDFELLKELRKAL---GIPVIAEGRINSPEQAAKALELGADAVVVGSAITRPEH 214 (219)
T ss_pred CCCCCHHHHHHHHHhc---CCCEEEeCCCCCHHHHHHHHHCCCCEEEEchHHhChHh
Confidence 1223577888888876 79999999999999999999999999999999876543
|
This reaction is part of the pathway that allows the usage of sialic acid as a carbohydrate source. Sialic acids are a family of related sugars that are found as a component of glycoproteins, gangliosides, and other sialoglycoconjugates. |
| >cd03332 LMO_FMN L-Lactate 2-monooxygenase (LMO) FMN-binding domain | Back alignment and domain information |
|---|
Probab=99.50 E-value=2.1e-12 Score=122.76 Aligned_cols=97 Identities=27% Similarity=0.472 Sum_probs=79.4
Q ss_pred HHHHHHhC-CCEEE-EecCCHHHHHHHHHcCCCEEEEecCCCCccc-CCCCchhhhHHHHHHHhCCCCCcEEeecCcCCH
Q 020013 102 LVLEAHSA-GVKVV-PQVGSFDEARKAVNAGVDAIIVQGREAGGHV-IGQDGLISLLPMVVDLIGDRDIPIIAAGGIVDA 178 (332)
Q Consensus 102 ~i~~~~~~-g~~v~-~~v~s~~~a~~a~~~g~D~ivv~G~eaGGh~-~~~~~~~~ll~~i~~~~~~~~iPviaaGGI~~~ 178 (332)
.++.+++. +.+++ ..|.+.++++.+.+.|+|+|+++|. ||+. ++..+++..|+++++.+.. ++|||++|||.++
T Consensus 244 ~i~~lr~~~~~pvivKgV~~~~dA~~a~~~G~d~I~vsnh--GGr~~d~~~~t~~~L~ei~~~~~~-~~~vi~dGGIr~G 320 (383)
T cd03332 244 DLAFLREWTDLPIVLKGILHPDDARRAVEAGVDGVVVSNH--GGRQVDGSIAALDALPEIVEAVGD-RLTVLFDSGVRTG 320 (383)
T ss_pred HHHHHHHhcCCCEEEecCCCHHHHHHHHHCCCCEEEEcCC--CCcCCCCCcCHHHHHHHHHHHhcC-CCeEEEeCCcCcH
Confidence 34455543 55555 5599999999999999999999876 4443 2345778899999988753 5999999999999
Q ss_pred HHHHHHHHcCcceeeeccccccC
Q 020013 179 RGYVAALSLGAQGICLGTRFVAS 201 (332)
Q Consensus 179 ~~v~~al~~GA~gV~~GT~fl~t 201 (332)
.|+.++|++||++|.+|+.|+..
T Consensus 321 ~Dv~KALaLGA~~v~iGr~~l~~ 343 (383)
T cd03332 321 ADIMKALALGAKAVLIGRPYAYG 343 (383)
T ss_pred HHHHHHHHcCCCEEEEcHHHHHH
Confidence 99999999999999999999954
|
LMO is a FMN-containing enzyme that catalyzes the conversion of L-lactate and oxygen to acetate, carbon dioxide, and water. LMO is a member of the family of alpha-hydroxy acid oxidases. It is thought to be a homooctamer with two- and four- fold axes in the center of the octamer. |
| >PRK11197 lldD L-lactate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.49 E-value=2e-12 Score=122.75 Aligned_cols=110 Identities=28% Similarity=0.400 Sum_probs=86.3
Q ss_pred HHHHHh--CCCEEEEecCCHHHHHHHHHcCCCEEEEecCCCCcccC-CCCchhhhHHHHHHHhCCCCCcEEeecCcCCHH
Q 020013 103 VLEAHS--AGVKVVPQVGSFDEARKAVNAGVDAIIVQGREAGGHVI-GQDGLISLLPMVVDLIGDRDIPIIAAGGIVDAR 179 (332)
Q Consensus 103 i~~~~~--~g~~v~~~v~s~~~a~~a~~~g~D~ivv~G~eaGGh~~-~~~~~~~ll~~i~~~~~~~~iPviaaGGI~~~~ 179 (332)
++.+++ .+..++..|.+.++++.+.+.|+|+|+++|. ||+.. +..++...++++++.+.. ++|||++|||.++.
T Consensus 237 i~~lr~~~~~pvivKgV~s~~dA~~a~~~Gvd~I~Vs~h--GGr~~d~~~~t~~~L~~i~~a~~~-~~~vi~dGGIr~g~ 313 (381)
T PRK11197 237 LEWIRDFWDGPMVIKGILDPEDARDAVRFGADGIVVSNH--GGRQLDGVLSSARALPAIADAVKG-DITILADSGIRNGL 313 (381)
T ss_pred HHHHHHhCCCCEEEEecCCHHHHHHHHhCCCCEEEECCC--CCCCCCCcccHHHHHHHHHHHhcC-CCeEEeeCCcCcHH
Confidence 444444 2455667899999999999999999999875 66542 234678889998887642 69999999999999
Q ss_pred HHHHHHHcCcceeeeccccccCccCCCCHHHHHHHh
Q 020013 180 GYVAALSLGAQGICLGTRFVASEESYAHPEYKRKLV 215 (332)
Q Consensus 180 ~v~~al~~GA~gV~~GT~fl~t~Es~~~~~~k~~~~ 215 (332)
|+.++|++||++|.+|+.|+..-.+...+...+.+.
T Consensus 314 Di~KALaLGA~~V~iGr~~l~~la~~G~~gv~~~l~ 349 (381)
T PRK11197 314 DVVRMIALGADTVLLGRAFVYALAAAGQAGVANLLD 349 (381)
T ss_pred HHHHHHHcCcCceeEhHHHHHHHHhccHHHHHHHHH
Confidence 999999999999999999998765554444444444
|
|
| >TIGR01182 eda Entner-Doudoroff aldolase | Back alignment and domain information |
|---|
Probab=99.49 E-value=1.6e-12 Score=113.31 Aligned_cols=171 Identities=25% Similarity=0.364 Sum_probs=132.0
Q ss_pred ccceecCCCCCCCCcHHHHHHHHhC---CCceeecCCCCCCHHHHHHHHHHHHhh-cCCcEEEEeecCCCCHHHHHHHHh
Q 020013 10 EYGIVQAPLGPDISGPELVAAVANA---GGLGLLRAPDWEAPDYLRDLIRKTRSL-TERPFGVGVVLAFPHNENIKAILS 85 (332)
Q Consensus 10 ~~Pii~apM~~g~s~~~la~avs~a---GglG~i~~~~~~~~e~~~~~i~~~r~~-~~~p~gvnl~~~~~~~~~~~~~~~ 85 (332)
+.|++ |.- ...+++.+..++++ ||+.++.. .+.+++. .+.++++++. .+..+|++-+.+ .+.++.+.+
T Consensus 7 ~~~li--aVl-r~~~~e~a~~~~~al~~~Gi~~iEi-t~~t~~a-~~~i~~l~~~~~~~~vGAGTVl~---~~~a~~a~~ 78 (204)
T TIGR01182 7 EAKIV--PVI-RIDDVDDALPLAKALIEGGLRVLEV-TLRTPVA-LDAIRLLRKEVPDALIGAGTVLN---PEQLRQAVD 78 (204)
T ss_pred hCCEE--EEE-ecCCHHHHHHHHHHHHHcCCCEEEE-eCCCccH-HHHHHHHHHHCCCCEEEEEeCCC---HHHHHHHHH
Confidence 34555 443 35566666666654 88999976 3667665 4456666643 356688887764 678999999
Q ss_pred cCCcEEEEccCCCcHHHHHHHHhCCCEEEEecCCHHHHHHHHHcCCCEEEEecCCCCcccCCCCchhhhHHHHHHHhCCC
Q 020013 86 EKVAVLQVSWGEYSEELVLEAHSAGVKVVPQVGSFDEARKAVNAGVDAIIVQGREAGGHVIGQDGLISLLPMVVDLIGDR 165 (332)
Q Consensus 86 ~~~~~I~~~~g~~~~~~i~~~~~~g~~v~~~v~s~~~a~~a~~~g~D~ivv~G~eaGGh~~~~~~~~~ll~~i~~~~~~~ 165 (332)
.|++++... + ..+++++.+++.|+++++.+.|+.|+..+.+.|+|.|.+...+..| | ..+++.++.-++
T Consensus 79 aGA~FivsP-~-~~~~v~~~~~~~~i~~iPG~~TptEi~~A~~~Ga~~vKlFPA~~~G---G----~~yikal~~plp-- 147 (204)
T TIGR01182 79 AGAQFIVSP-G-LTPELAKHAQDHGIPIIPGVATPSEIMLALELGITALKLFPAEVSG---G----VKMLKALAGPFP-- 147 (204)
T ss_pred cCCCEEECC-C-CCHHHHHHHHHcCCcEECCCCCHHHHHHHHHCCCCEEEECCchhcC---C----HHHHHHHhccCC--
Confidence 999999776 3 3678999999999999999999999999999999999996543221 1 235666665554
Q ss_pred CCcEEeecCcCCHHHHHHHHHcCcceeeecccccc
Q 020013 166 DIPIIAAGGIVDARGYVAALSLGAQGICLGTRFVA 200 (332)
Q Consensus 166 ~iPviaaGGI~~~~~v~~al~~GA~gV~~GT~fl~ 200 (332)
++|+++.||| +.+|+.+++++|+.+|.+||.++.
T Consensus 148 ~i~~~ptGGV-~~~N~~~~l~aGa~~vg~Gs~L~~ 181 (204)
T TIGR01182 148 QVRFCPTGGI-NLANVRDYLAAPNVACGGGSWLVP 181 (204)
T ss_pred CCcEEecCCC-CHHHHHHHHhCCCEEEEEChhhcC
Confidence 7999999999 899999999999999999999874
|
2-deydro-3-deoxyphosphogluconate aldolase (EC 4.1.2.14) is an enzyme of the Entner-Doudoroff pathway. This aldolase has another function, 4-hydroxy-2-oxoglutarate aldolase (EC 4.1.3.16) shown experimentally in Escherichia coli and Pseudomonas putida |
| >TIGR01037 pyrD_sub1_fam dihydroorotate dehydrogenase (subfamily 1) family protein | Back alignment and domain information |
|---|
Probab=99.48 E-value=4.3e-12 Score=118.27 Aligned_cols=199 Identities=19% Similarity=0.238 Sum_probs=127.7
Q ss_pred CCccceecCCCCCCCCcHHHHHHHHhCCCceeecCCC--------------------------CC--CHHHHHHHHHHHH
Q 020013 8 GFEYGIVQAPLGPDISGPELVAAVANAGGLGLLRAPD--------------------------WE--APDYLRDLIRKTR 59 (332)
Q Consensus 8 ~~~~Pii~apM~~g~s~~~la~avs~aGglG~i~~~~--------------------------~~--~~e~~~~~i~~~r 59 (332)
.++.||+.+|+..+. +.+....+.+. |+|++..++ +. ..+...+.+...+
T Consensus 9 ~l~npi~~aag~~~~-~~~~~~~~~~~-G~g~iv~kt~~~~~~~gn~~pr~~~~~~~~~n~~gl~~~g~~~~~~~~~~~~ 86 (300)
T TIGR01037 9 RFKNPLILASGIMGS-GVESLRRIDRS-GAGAVVTKSIGLEPRPGYRNPTIVETPCGMLNAIGLQNPGVEAFLEELKPVR 86 (300)
T ss_pred ECCCCCEeCCcCCCC-CHHHHHHHHHc-CCcEEEeCccccccccCCCCCeEEecccHHhhhccCCCcCHHHHHHHHHHHh
Confidence 367899999953244 55666667776 467765421 00 1223333333333
Q ss_pred hhcCCcEEEEeecCCCCHHH---HHHHHhc--CCcEEEEccCCCc---------------HHHHHHHHhC-CCEEEEecC
Q 020013 60 SLTERPFGVGVVLAFPHNEN---IKAILSE--KVAVLQVSWGEYS---------------EELVLEAHSA-GVKVVPQVG 118 (332)
Q Consensus 60 ~~~~~p~gvnl~~~~~~~~~---~~~~~~~--~~~~I~~~~g~~~---------------~~~i~~~~~~-g~~v~~~v~ 118 (332)
...+.|+.+++....+ ++. .+.+.+. ++|+|.+++++|. .++++.+++. +++|+.++.
T Consensus 87 ~~~~~pl~~qi~g~~~-~~~~~~a~~~~~~~~~~d~ielN~~cP~~~~~g~~l~~~~~~~~eiv~~vr~~~~~pv~vKi~ 165 (300)
T TIGR01037 87 EEFPTPLIASVYGSSV-EEFAEVAEKLEKAPPYVDAYELNLSCPHVKGGGIAIGQDPELSADVVKAVKDKTDVPVFAKLS 165 (300)
T ss_pred ccCCCcEEEEeecCCH-HHHHHHHHHHHhccCccCEEEEECCCCCCCCCccccccCHHHHHHHHHHHHHhcCCCEEEECC
Confidence 3235689999987654 333 3334333 3899999877642 2455666654 788888776
Q ss_pred -CH----HHHHHHHHcCCCEEEEecCCC-----------------CcccCCCC---chhhhHHHHHHHhCCCCCcEEeec
Q 020013 119 -SF----DEARKAVNAGVDAIIVQGREA-----------------GGHVIGQD---GLISLLPMVVDLIGDRDIPIIAAG 173 (332)
Q Consensus 119 -s~----~~a~~a~~~g~D~ivv~G~ea-----------------GGh~~~~~---~~~~ll~~i~~~~~~~~iPviaaG 173 (332)
+. +.++.+.++|+|+|++.+.-. ||.. ++. ..+..+.++++.+ ++|||+.|
T Consensus 166 ~~~~~~~~~a~~l~~~G~d~i~v~nt~~~~~~~~~~~~~~~~~~~gg~s-g~~~~~~~l~~v~~i~~~~---~ipvi~~G 241 (300)
T TIGR01037 166 PNVTDITEIAKAAEEAGADGLTLINTLRGMKIDIKTGKPILANKTGGLS-GPAIKPIALRMVYDVYKMV---DIPIIGVG 241 (300)
T ss_pred CChhhHHHHHHHHHHcCCCEEEEEccCCccccccccCceeeCCCCcccc-chhhhHHHHHHHHHHHhcC---CCCEEEEC
Confidence 33 345667889999999865321 2221 111 1246677777766 79999999
Q ss_pred CcCCHHHHHHHHHcCcceeeeccccccCccCCCCHHHHHHHh
Q 020013 174 GIVDARGYVAALSLGAQGICLGTRFVASEESYAHPEYKRKLV 215 (332)
Q Consensus 174 GI~~~~~v~~al~~GA~gV~~GT~fl~t~Es~~~~~~k~~~~ 215 (332)
||.+++++.+++..|||+|++||+++...+ .-...++.+.
T Consensus 242 GI~s~~da~~~l~~GAd~V~igr~~l~~p~--~~~~i~~~l~ 281 (300)
T TIGR01037 242 GITSFEDALEFLMAGASAVQVGTAVYYRGF--AFKKIIEGLI 281 (300)
T ss_pred CCCCHHHHHHHHHcCCCceeecHHHhcCch--HHHHHHHHHH
Confidence 999999999999999999999999998762 3333444443
|
This family includes subfamily 1 dihydroorotate dehydrogenases while excluding the closely related subfamily 2 (TIGR01036). This family also includes a number of uncharacterized proteins and a domain of dihydropyrimidine dehydrogenase. The uncharacterized proteins might all be dihydroorotate dehydrogenase. |
| >cd04727 pdxS PdxS is a subunit of the pyridoxal 5'-phosphate (PLP) synthase, an important enzyme in deoxyxylulose 5-phosphate (DXP)-independent pathway for de novo biosynthesis of PLP, present in some eubacteria, in archaea, fungi, plants, plasmodia, and some metazoa | Back alignment and domain information |
|---|
Probab=99.47 E-value=3.9e-12 Score=114.30 Aligned_cols=187 Identities=18% Similarity=0.247 Sum_probs=133.4
Q ss_pred CCCcHHHHHHHHhCCCceeecCCC-------------CCCHHHHHHHHHHHHhhcCCcEEEEeecCCCCHHHHHHHHhcC
Q 020013 21 DISGPELVAAVANAGGLGLLRAPD-------------WEAPDYLRDLIRKTRSLTERPFGVGVVLAFPHNENIKAILSEK 87 (332)
Q Consensus 21 g~s~~~la~avs~aGglG~i~~~~-------------~~~~e~~~~~i~~~r~~~~~p~gvnl~~~~~~~~~~~~~~~~~ 87 (332)
-+++++.+.-..+||..+++...+ ..+|+ .|+++++..+.|+-- ++- ..+...++.+.+.|
T Consensus 14 ~v~~~~qa~~ae~aga~~v~~~~~~~~~~~~~~~v~R~~~~~----~I~~Ik~~V~iPVIG-i~K-~~~~~Ea~~L~eaG 87 (283)
T cd04727 14 DVTNAEQARIAEEAGAVAVMALERVPADIRAAGGVARMADPK----MIKEIMDAVSIPVMA-KVR-IGHFVEAQILEALG 87 (283)
T ss_pred EeCCHHHHHHHHHcCceEEeeeccCchhhhhcCCeeecCCHH----HHHHHHHhCCCCeEE-eee-hhHHHHHHHHHHcC
Confidence 478999999888999999997532 12333 466666666777532 111 11245577888999
Q ss_pred CcEEEEccC-CCcHHHHHHHHh-CCCEEEEecCCHHHHHHHHHcCCCEEEEecCCCCcc---------------------
Q 020013 88 VAVLQVSWG-EYSEELVLEAHS-AGVKVVPQVGSFDEARKAVNAGVDAIIVQGREAGGH--------------------- 144 (332)
Q Consensus 88 ~~~I~~~~g-~~~~~~i~~~~~-~g~~v~~~v~s~~~a~~a~~~g~D~ivv~G~eaGGh--------------------- 144 (332)
+|+|.-+.- .|..+++..+|. .+.++++.++|.+|++++.+.|+|.|-..+....|.
T Consensus 88 vDiIDaT~r~rP~~~~~~~iK~~~~~l~MAD~stleEal~a~~~Gad~I~TTl~gyT~~~~~~~~~~~~i~~~i~~~~gy 167 (283)
T cd04727 88 VDMIDESEVLTPADEEHHIDKHKFKVPFVCGARNLGEALRRISEGAAMIRTKGEAGTGNVVEAVRHMRAVNGEIRKLQSM 167 (283)
T ss_pred CCEEeccCCCCcHHHHHHHHHHHcCCcEEccCCCHHHHHHHHHCCCCEEEecCCCCCCcHHHHHHHHHHHHHHHHHHhCC
Confidence 999964311 123467777776 489999999999999999999999998765422222
Q ss_pred --------cCCCCchhhhHHHHHHHhCCCCCcEE--eecCcCCHHHHHHHHHcCcceeeeccccccCccCC-CCHHHHHH
Q 020013 145 --------VIGQDGLISLLPMVVDLIGDRDIPII--AAGGIVDARGYVAALSLGAQGICLGTRFVASEESY-AHPEYKRK 213 (332)
Q Consensus 145 --------~~~~~~~~~ll~~i~~~~~~~~iPvi--aaGGI~~~~~v~~al~~GA~gV~~GT~fl~t~Es~-~~~~~k~~ 213 (332)
.......+.+|.++++.. ++||+ +.|||.+++++..++.+||++|.+||+++.++... ....++++
T Consensus 168 t~~t~~~~~~~~~~d~elLk~l~~~~---~iPVV~iAeGGI~Tpena~~v~e~GAdgVaVGSAI~~a~dP~~~tk~f~~a 244 (283)
T cd04727 168 SEEELYAVAKEIQAPYELVKETAKLG---RLPVVNFAAGGVATPADAALMMQLGADGVFVGSGIFKSENPEKRARAIVEA 244 (283)
T ss_pred CHHHHHhhhcccCCCHHHHHHHHHhc---CCCeEEEEeCCCCCHHHHHHHHHcCCCEEEEcHHhhcCCCHHHHHHHHHHH
Confidence 000124578888888876 79997 99999999999999999999999999999654321 23445555
Q ss_pred Hhc
Q 020013 214 LVE 216 (332)
Q Consensus 214 ~~~ 216 (332)
+.+
T Consensus 245 i~~ 247 (283)
T cd04727 245 VTH 247 (283)
T ss_pred HHh
Confidence 544
|
Together with PdxT, PdxS forms the PLP synthase, a heteromeric glutamine amidotransferase (GATase), whereby PdxT produces ammonia from glutamine and PdxS combines ammonia with five- and three-carbon phosphosugars to form PLP. PLP is the biologically active form of vitamin B6, an essential cofactor in many biochemical processes. PdxS subunits form two hexameric rings. |
| >cd02810 DHOD_DHPD_FMN Dihydroorotate dehydrogenase (DHOD) and Dihydropyrimidine dehydrogenase (DHPD) FMN-binding domain | Back alignment and domain information |
|---|
Probab=99.47 E-value=4.2e-12 Score=117.64 Aligned_cols=191 Identities=19% Similarity=0.192 Sum_probs=129.9
Q ss_pred CCccceecCCCCCCCCcHHHHHHHHhCCCceeecCCC-----------------------------------C--CCHHH
Q 020013 8 GFEYGIVQAPLGPDISGPELVAAVANAGGLGLLRAPD-----------------------------------W--EAPDY 50 (332)
Q Consensus 8 ~~~~Pii~apM~~g~s~~~la~avs~aGglG~i~~~~-----------------------------------~--~~~e~ 50 (332)
.++.||+.+... ...+.++.....++| +|++..++ + ..++.
T Consensus 7 ~~~nPv~~aag~-~~~~~~~~~~~~~~g-~g~vv~kti~~~~~~~n~~pr~~~~~~~~~~~~~~~~~~n~~g~~~~g~~~ 84 (289)
T cd02810 7 KLKNPFGVAAGP-LLKTGELIARAAAAG-FGAVVYKTVTLHPRPGNPLPRVARLPPEGESYPEQLGILNSFGLPNLGLDV 84 (289)
T ss_pred ECCCCCEeCCCC-CCCCHHHHHHHHHcC-CCeEEeCcccCCCCCCCCCCCEEEeccccccCcccceEeecCCCCCcCHHH
Confidence 367899988875 346888888887765 45542211 0 11344
Q ss_pred HHHHHHHHHhh-cCCcEEEEeecCCCC--HHHHHHHHhcCCcEEEEccCCCc--------------HHHHHHHHhC-CCE
Q 020013 51 LRDLIRKTRSL-TERPFGVGVVLAFPH--NENIKAILSEKVAVLQVSWGEYS--------------EELVLEAHSA-GVK 112 (332)
Q Consensus 51 ~~~~i~~~r~~-~~~p~gvnl~~~~~~--~~~~~~~~~~~~~~I~~~~g~~~--------------~~~i~~~~~~-g~~ 112 (332)
+.+.+...+.. .+.|+.+|+....+. .+.++.+.+.++|+|.+++++|. .++++.+++. +++
T Consensus 85 ~~~~i~~~~~~~~~~pvi~si~g~~~~~~~~~a~~~~~~G~d~ielN~~cP~~~~~~~~~~~~~~~~eiv~~vr~~~~~p 164 (289)
T cd02810 85 WLQDIAKAKKEFPGQPLIASVGGSSKEDYVELARKIERAGAKALELNLSCPNVGGGRQLGQDPEAVANLLKAVKAAVDIP 164 (289)
T ss_pred HHHHHHHHHhccCCCeEEEEeccCCHHHHHHHHHHHHHhCCCEEEEEcCCCCCCCCcccccCHHHHHHHHHHHHHccCCC
Confidence 55555555554 578999999876431 23455666779999999877541 1356666664 677
Q ss_pred EEEecC---C----HHHHHHHHHcCCCEEEEecCCCCc--------------ccC--CC---CchhhhHHHHHHHhCCCC
Q 020013 113 VVPQVG---S----FDEARKAVNAGVDAIIVQGREAGG--------------HVI--GQ---DGLISLLPMVVDLIGDRD 166 (332)
Q Consensus 113 v~~~v~---s----~~~a~~a~~~g~D~ivv~G~eaGG--------------h~~--~~---~~~~~ll~~i~~~~~~~~ 166 (332)
++.++. + .+.++.+.++|+|+|++.+...+. +.+ +. ...+..+.++++.++. +
T Consensus 165 v~vKl~~~~~~~~~~~~a~~l~~~Gad~i~~~~~~~~~~~~~~~~~~~~~~~~~g~sg~~~~~~~~~~v~~i~~~~~~-~ 243 (289)
T cd02810 165 LLVKLSPYFDLEDIVELAKAAERAGADGLTAINTISGRVVDLKTVGPGPKRGTGGLSGAPIRPLALRWVARLAARLQL-D 243 (289)
T ss_pred EEEEeCCCCCHHHHHHHHHHHHHcCCCEEEEEcccCccceecccCccccCCCCCccCcHHHHHHHHHHHHHHHHhcCC-C
Confidence 877654 3 344666788999999997653221 110 11 1135567777776531 5
Q ss_pred CcEEeecCcCCHHHHHHHHHcCcceeeeccccccC
Q 020013 167 IPIIAAGGIVDARGYVAALSLGAQGICLGTRFVAS 201 (332)
Q Consensus 167 iPviaaGGI~~~~~v~~al~~GA~gV~~GT~fl~t 201 (332)
+|||+.|||.+++++.+++.+|||+|++||+++..
T Consensus 244 ipiia~GGI~~~~da~~~l~~GAd~V~vg~a~~~~ 278 (289)
T cd02810 244 IPIIGVGGIDSGEDVLEMLMAGASAVQVATALMWD 278 (289)
T ss_pred CCEEEECCCCCHHHHHHHHHcCccHheEcHHHHhc
Confidence 99999999999999999999999999999999975
|
DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively. DHPD catalyzes the first step in pyrimidine degradation: the NADPH-dependent reduction of uracil and thymine to the corresponding 5,6-dihydropyrimidines. DHPD contains two FAD, two FMN and eight [4Fe-4S] clusters, arranged in two electron transfer chains that pass its homodimeric interface twice. Two of |
| >PRK07455 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional | Back alignment and domain information |
|---|
Probab=99.46 E-value=4.2e-12 Score=110.07 Aligned_cols=162 Identities=22% Similarity=0.325 Sum_probs=116.3
Q ss_pred CCcHHHHHHHHh---CCCceeecCCCCCCHHHHHHHHHHHHhhcC-CcEEEEeecCCCCHHHHHHHHhcCCcEEEEccCC
Q 020013 22 ISGPELVAAVAN---AGGLGLLRAPDWEAPDYLRDLIRKTRSLTE-RPFGVGVVLAFPHNENIKAILSEKVAVLQVSWGE 97 (332)
Q Consensus 22 ~s~~~la~avs~---aGglG~i~~~~~~~~e~~~~~i~~~r~~~~-~p~gvnl~~~~~~~~~~~~~~~~~~~~I~~~~g~ 97 (332)
..+++.+..+.+ .||+.++.. +..++.. .+.++.+++... ...+.+.++. .+.++.+.+.++++|++..
T Consensus 20 ~~~~~~~~~~~~~~~~~Gv~~vql-r~k~~~~-~e~~~~~~~~~~~~~~g~gtvl~---~d~~~~A~~~gAdgv~~p~-- 92 (187)
T PRK07455 20 APDLELGLQMAEAVAAGGMRLIEI-TWNSDQP-AELISQLREKLPECIIGTGTILT---LEDLEEAIAAGAQFCFTPH-- 92 (187)
T ss_pred cCCHHHHHHHHHHHHHCCCCEEEE-eCCCCCH-HHHHHHHHHhCCCcEEeEEEEEc---HHHHHHHHHcCCCEEECCC--
Confidence 445555444443 377898876 3444432 344555554322 2245555543 5789999999999998863
Q ss_pred CcHHHHHHHHhCCCEEEEecCCHHHHHHHHHcCCCEEEEecCCCCcccCCCCchhhhHHHHHHHhCCCCCcEEeecCcCC
Q 020013 98 YSEELVLEAHSAGVKVVPQVGSFDEARKAVNAGVDAIIVQGREAGGHVIGQDGLISLLPMVVDLIGDRDIPIIAAGGIVD 177 (332)
Q Consensus 98 ~~~~~i~~~~~~g~~v~~~v~s~~~a~~a~~~g~D~ivv~G~eaGGh~~~~~~~~~ll~~i~~~~~~~~iPviaaGGI~~ 177 (332)
...+..+..+..++..++.++|+.|+.++.+.|+|+|.+... ........++.++..++ ++|+++.||| +
T Consensus 93 ~~~~~~~~~~~~~~~~i~G~~t~~e~~~A~~~Gadyv~~Fpt-------~~~~G~~~l~~~~~~~~--~ipvvaiGGI-~ 162 (187)
T PRK07455 93 VDPELIEAAVAQDIPIIPGALTPTEIVTAWQAGASCVKVFPV-------QAVGGADYIKSLQGPLG--HIPLIPTGGV-T 162 (187)
T ss_pred CCHHHHHHHHHcCCCEEcCcCCHHHHHHHHHCCCCEEEECcC-------CcccCHHHHHHHHhhCC--CCcEEEeCCC-C
Confidence 235667777777888777799999999999999999998321 11123566777777663 5999999999 8
Q ss_pred HHHHHHHHHcCcceeeecccccc
Q 020013 178 ARGYVAALSLGAQGICLGTRFVA 200 (332)
Q Consensus 178 ~~~v~~al~~GA~gV~~GT~fl~ 200 (332)
.+|+.+++++||++|.++|.++.
T Consensus 163 ~~n~~~~l~aGa~~vav~s~i~~ 185 (187)
T PRK07455 163 LENAQAFIQAGAIAVGLSGQLFP 185 (187)
T ss_pred HHHHHHHHHCCCeEEEEehhccc
Confidence 99999999999999999999864
|
|
| >PRK07114 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional | Back alignment and domain information |
|---|
Probab=99.46 E-value=2.1e-12 Score=114.13 Aligned_cols=175 Identities=14% Similarity=0.220 Sum_probs=133.3
Q ss_pred hhcCCccceecCCCCCCCCcHHHHHHHHhC---CCceeecCCCCCCHHHHHHHHHHHH----h-hcCCcEEEEeecCCCC
Q 020013 5 GMLGFEYGIVQAPLGPDISGPELVAAVANA---GGLGLLRAPDWEAPDYLRDLIRKTR----S-LTERPFGVGVVLAFPH 76 (332)
Q Consensus 5 ~~l~~~~Pii~apM~~g~s~~~la~avs~a---GglG~i~~~~~~~~e~~~~~i~~~r----~-~~~~p~gvnl~~~~~~ 76 (332)
+.|. +.||| |.- ...+++.+..++++ ||+.++.. .+.+|+.+ +.+++++ + ..+..+|++-+.+
T Consensus 10 ~~l~-~~~vi--~Vv-r~~~~~~a~~~~~al~~gGi~~iEi-T~~tp~a~-~~i~~l~~~~~~~~p~~~vGaGTVl~--- 80 (222)
T PRK07114 10 TAMK-ATGMV--PVF-YHADVEVAKKVIKACYDGGARVFEF-TNRGDFAH-EVFAELVKYAAKELPGMILGVGSIVD--- 80 (222)
T ss_pred HHHH-hCCEE--EEE-EcCCHHHHHHHHHHHHHCCCCEEEE-eCCCCcHH-HHHHHHHHHHHhhCCCeEEeeEeCcC---
Confidence 4443 55666 654 45677777777664 89999976 46666543 3334442 2 2345678887774
Q ss_pred HHHHHHHHhcCCcEEEEccCCCcHHHHHHHHhCCCEEEEecCCHHHHHHHHHcCCCEEEEecCCCCcccCCCCchhhhHH
Q 020013 77 NENIKAILSEKVAVLQVSWGEYSEELVLEAHSAGVKVVPQVGSFDEARKAVNAGVDAIIVQGREAGGHVIGQDGLISLLP 156 (332)
Q Consensus 77 ~~~~~~~~~~~~~~I~~~~g~~~~~~i~~~~~~g~~v~~~v~s~~~a~~a~~~g~D~ivv~G~eaGGh~~~~~~~~~ll~ 156 (332)
.++++.+.+.|++++... + ..+++++.+++.++++++.+.|+.|+..+.+.|+|.|.+...+.+| ...++
T Consensus 81 ~e~a~~a~~aGA~FiVsP-~-~~~~v~~~~~~~~i~~iPG~~TpsEi~~A~~~Ga~~vKlFPA~~~G--------~~~ik 150 (222)
T PRK07114 81 AATAALYIQLGANFIVTP-L-FNPDIAKVCNRRKVPYSPGCGSLSEIGYAEELGCEIVKLFPGSVYG--------PGFVK 150 (222)
T ss_pred HHHHHHHHHcCCCEEECC-C-CCHHHHHHHHHcCCCEeCCCCCHHHHHHHHHCCCCEEEECcccccC--------HHHHH
Confidence 678999999999999887 3 3678999999999999999999999999999999999996543333 34566
Q ss_pred HHHHHhCCCCCcEEeecCcCCH--HHHHHHHHcCcceeeeccccccC
Q 020013 157 MVVDLIGDRDIPIIAAGGIVDA--RGYVAALSLGAQGICLGTRFVAS 201 (332)
Q Consensus 157 ~i~~~~~~~~iPviaaGGI~~~--~~v~~al~~GA~gV~~GT~fl~t 201 (332)
.+..-++ ++|+++.||| +. +|+.+++++|+.+|.+||.++..
T Consensus 151 al~~p~p--~i~~~ptGGV-~~~~~n~~~yl~aGa~avg~Gs~L~~~ 194 (222)
T PRK07114 151 AIKGPMP--WTKIMPTGGV-EPTEENLKKWFGAGVTCVGMGSKLIPK 194 (222)
T ss_pred HHhccCC--CCeEEeCCCC-CcchhcHHHHHhCCCEEEEEChhhcCc
Confidence 6655554 7999999999 55 89999999999999999998753
|
|
| >PRK00043 thiE thiamine-phosphate pyrophosphorylase; Reviewed | Back alignment and domain information |
|---|
Probab=99.46 E-value=4e-12 Score=112.31 Aligned_cols=168 Identities=20% Similarity=0.251 Sum_probs=119.4
Q ss_pred HHHHHHHhCCCceeecCCC-CCCHHHHHHHHHHHHhhcCCcEEEEeecCCCCHHHHHHHHhcCCcEEEEccCCCcHHHHH
Q 020013 26 ELVAAVANAGGLGLLRAPD-WEAPDYLRDLIRKTRSLTERPFGVGVVLAFPHNENIKAILSEKVAVLQVSWGEYSEELVL 104 (332)
Q Consensus 26 ~la~avs~aGglG~i~~~~-~~~~e~~~~~i~~~r~~~~~p~gvnl~~~~~~~~~~~~~~~~~~~~I~~~~g~~~~~~i~ 104 (332)
+.+..+.++ |+..+...- -.+.....+.++++++... +++++++++ +.++.+.+.|+++|+++....+...++
T Consensus 25 ~~~~~~~~~-gv~~v~lr~~~~~~~~~~~~~~~~~~~~~-~~~~~l~~~----~~~~~a~~~gad~vh~~~~~~~~~~~~ 98 (212)
T PRK00043 25 EVVEAALEG-GVTLVQLREKGLDTRERLELARALKELCR-RYGVPLIVN----DRVDLALAVGADGVHLGQDDLPVADAR 98 (212)
T ss_pred HHHHHHHhc-CCCEEEEeCCCCCHHHHHHHHHHHHHHHH-HhCCeEEEe----ChHHHHHHcCCCEEecCcccCCHHHHH
Confidence 334444444 455554311 1234445556666655433 477777774 468889999999999975544455666
Q ss_pred HHHhCCCEEEEecCCHHHHHHHHHcCCCEEEEecCCCCc-ccCCCC-chhhhHHHHHHHhCCCCCcEEeecCcCCHHHHH
Q 020013 105 EAHSAGVKVVPQVGSFDEARKAVNAGVDAIIVQGREAGG-HVIGQD-GLISLLPMVVDLIGDRDIPIIAAGGIVDARGYV 182 (332)
Q Consensus 105 ~~~~~g~~v~~~v~s~~~a~~a~~~g~D~ivv~G~eaGG-h~~~~~-~~~~ll~~i~~~~~~~~iPviaaGGI~~~~~v~ 182 (332)
.+++.+..+...++|.+++.++.+.|+|+|.+.....++ |..... ..+..++++++..+ ++||++.||| +.+++.
T Consensus 99 ~~~~~~~~~g~~~~t~~e~~~a~~~gaD~v~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~--~~~v~a~GGI-~~~~i~ 175 (212)
T PRK00043 99 ALLGPDAIIGLSTHTLEEAAAALAAGADYVGVGPIFPTPTKKDAKAPQGLEGLREIRAAVG--DIPIVAIGGI-TPENAP 175 (212)
T ss_pred HHcCCCCEEEEeCCCHHHHHHHhHcCCCEEEECCccCCCCCCCCCCCCCHHHHHHHHHhcC--CCCEEEECCc-CHHHHH
Confidence 677778889999999999999999999999985543333 321111 23678888887762 3999999999 899999
Q ss_pred HHHHcCcceeeeccccccCc
Q 020013 183 AALSLGAQGICLGTRFVASE 202 (332)
Q Consensus 183 ~al~~GA~gV~~GT~fl~t~ 202 (332)
+++.+||++|.+||.++.++
T Consensus 176 ~~~~~Ga~gv~~gs~i~~~~ 195 (212)
T PRK00043 176 EVLEAGADGVAVVSAITGAE 195 (212)
T ss_pred HHHHcCCCEEEEeHHhhcCC
Confidence 99999999999999988653
|
|
| >cd00564 TMP_TenI Thiamine monophosphate synthase (TMP synthase)/TenI | Back alignment and domain information |
|---|
Probab=99.45 E-value=5.7e-12 Score=109.43 Aligned_cols=166 Identities=19% Similarity=0.272 Sum_probs=119.3
Q ss_pred HHHHHHHhCCCceeecCC-CCCCHHHHHHHHHHHHhhcCCcEEEEeecCCCCHHHHHHHHhcCCcEEEEccCCCcHHHHH
Q 020013 26 ELVAAVANAGGLGLLRAP-DWEAPDYLRDLIRKTRSLTERPFGVGVVLAFPHNENIKAILSEKVAVLQVSWGEYSEELVL 104 (332)
Q Consensus 26 ~la~avs~aGglG~i~~~-~~~~~e~~~~~i~~~r~~~~~p~gvnl~~~~~~~~~~~~~~~~~~~~I~~~~g~~~~~~i~ 104 (332)
+.+.+..++| +..+... .-.++....+.++++++.+. +++++++++ +.++.+.+.+++.+++.........++
T Consensus 16 ~~l~~l~~~g-~~~i~lr~~~~~~~~~~~~~~~i~~~~~-~~~~~l~~~----~~~~~a~~~g~~~vh~~~~~~~~~~~~ 89 (196)
T cd00564 16 EVVEAALKGG-VTLVQLREKDLSARELLELARALRELCR-KYGVPLIIN----DRVDLALAVGADGVHLGQDDLPVAEAR 89 (196)
T ss_pred HHHHHHHhcC-CCEEEEeCCCCCHHHHHHHHHHHHHHHH-HhCCeEEEe----ChHHHHHHcCCCEEecCcccCCHHHHH
Confidence 3444454554 4444331 11244555667777776654 688888884 357788899999998875444455566
Q ss_pred HHHhCCCEEEEecCCHHHHHHHHHcCCCEEEEecC-CCCcccCC-CCchhhhHHHHHHHhCCCCCcEEeecCcCCHHHHH
Q 020013 105 EAHSAGVKVVPQVGSFDEARKAVNAGVDAIIVQGR-EAGGHVIG-QDGLISLLPMVVDLIGDRDIPIIAAGGIVDARGYV 182 (332)
Q Consensus 105 ~~~~~g~~v~~~v~s~~~a~~a~~~g~D~ivv~G~-eaGGh~~~-~~~~~~ll~~i~~~~~~~~iPviaaGGI~~~~~v~ 182 (332)
.++..+..+...+++.+++..+.+.|+|+|.+... ....+... ....+..++++++.. ++||++.||| +.+++.
T Consensus 90 ~~~~~~~~~g~~~~t~~~~~~~~~~g~d~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~pv~a~GGi-~~~~i~ 165 (196)
T cd00564 90 ALLGPDLIIGVSTHSLEEALRAEELGADYVGFGPVFPTPTKPGAGPPLGLELLREIAELV---EIPVVAIGGI-TPENAA 165 (196)
T ss_pred HHcCCCCEEEeeCCCHHHHHHHhhcCCCEEEECCccCCCCCCCCCCCCCHHHHHHHHHhC---CCCEEEECCC-CHHHHH
Confidence 66667888888899999999999999999988433 22223211 234477788877654 7999999999 789999
Q ss_pred HHHHcCcceeeeccccccC
Q 020013 183 AALSLGAQGICLGTRFVAS 201 (332)
Q Consensus 183 ~al~~GA~gV~~GT~fl~t 201 (332)
+++.+|+++|.+||.++.+
T Consensus 166 ~~~~~Ga~~i~~g~~i~~~ 184 (196)
T cd00564 166 EVLAAGADGVAVISAITGA 184 (196)
T ss_pred HHHHcCCCEEEEehHhhcC
Confidence 9999999999999998865
|
TMP synthase catalyzes an important step in the thiamine biosynthesis pathway, the substitution of the pyrophosphate of 2-methyl-4-amino-5- hydroxymethylpyrimidine pyrophosphate by 4-methyl-5- (beta-hydroxyethyl) thiazole phosphate to yield thiamine phosphate. TenI is a enzymatically inactive regulatory protein involved in the regulation of several extracellular enzymes. This superfamily also contains other enzymatically inactive proteins with unknown functions. |
| >COG0352 ThiE Thiamine monophosphate synthase [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=99.45 E-value=5.2e-12 Score=110.64 Aligned_cols=160 Identities=18% Similarity=0.269 Sum_probs=116.6
Q ss_pred CCceeecCCC-CCCHHHHHHHHHHHHhhcCCcEEEEeecCCCCHHHHHHHHhcCCcEEEEccCCCcHHHHHHHHhCCCEE
Q 020013 35 GGLGLLRAPD-WEAPDYLRDLIRKTRSLTERPFGVGVVLAFPHNENIKAILSEKVAVLQVSWGEYSEELVLEAHSAGVKV 113 (332)
Q Consensus 35 GglG~i~~~~-~~~~e~~~~~i~~~r~~~~~p~gvnl~~~~~~~~~~~~~~~~~~~~I~~~~g~~~~~~i~~~~~~g~~v 113 (332)
||+-.+.... ..+.++..+..++++.++.+ +++-+++| +.++++++.++|.|+++..+.+....+++...+..+
T Consensus 33 ~Gv~~vQlR~K~~~~~~~~~~a~~~~~lc~~-~~v~liIN----d~~dlA~~~~AdGVHlGq~D~~~~~ar~~~~~~~iI 107 (211)
T COG0352 33 GGVTAVQLREKDLSDEEYLALAEKLRALCQK-YGVPLIIN----DRVDLALAVGADGVHLGQDDMPLAEARELLGPGLII 107 (211)
T ss_pred CCCeEEEEecCCCChHHHHHHHHHHHHHHHH-hCCeEEec----CcHHHHHhCCCCEEEcCCcccchHHHHHhcCCCCEE
Confidence 6677775421 12333335555666665433 55666663 568899999999999998766777777777778889
Q ss_pred EEecCCHHHHHHHHHcCCCEEEEecC-CCCcccCCCCchhhhHHHHHHHhCCCCCcEEeecCcCCHHHHHHHHHcCccee
Q 020013 114 VPQVGSFDEARKAVNAGVDAIIVQGR-EAGGHVIGQDGLISLLPMVVDLIGDRDIPIIAAGGIVDARGYVAALSLGAQGI 192 (332)
Q Consensus 114 ~~~v~s~~~a~~a~~~g~D~ivv~G~-eaGGh~~~~~~~~~ll~~i~~~~~~~~iPviaaGGI~~~~~v~~al~~GA~gV 192 (332)
..++++.+++.++.+.|+|||.+-.. +.-.+.+.+...+..+..+.+.. .+|+++.||| +.+++.+++..||+||
T Consensus 108 G~S~h~~eea~~A~~~g~DYv~~GpifpT~tK~~~~~~G~~~l~~~~~~~---~iP~vAIGGi-~~~nv~~v~~~Ga~gV 183 (211)
T COG0352 108 GLSTHDLEEALEAEELGADYVGLGPIFPTSTKPDAPPLGLEGLREIRELV---NIPVVAIGGI-NLENVPEVLEAGADGV 183 (211)
T ss_pred EeecCCHHHHHHHHhcCCCEEEECCcCCCCCCCCCCccCHHHHHHHHHhC---CCCEEEEcCC-CHHHHHHHHHhCCCeE
Confidence 99999999999999999999998211 00011111123467777777765 6999999999 8999999999999999
Q ss_pred eeccccccCcc
Q 020013 193 CLGTRFVASEE 203 (332)
Q Consensus 193 ~~GT~fl~t~E 203 (332)
.+-|+++.+..
T Consensus 184 Avvsai~~a~d 194 (211)
T COG0352 184 AVVSAITSAAD 194 (211)
T ss_pred EehhHhhcCCC
Confidence 99999998544
|
|
| >PRK07107 inosine 5-monophosphate dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=99.45 E-value=3.5e-12 Score=125.85 Aligned_cols=129 Identities=29% Similarity=0.292 Sum_probs=95.0
Q ss_pred HHHHHHHhcCCcEEEEc--cCCC--cHHHHHHHHhC-C--CEEE-EecCCHHHHHHHHHcCCCEEEEecCCCCcccC---
Q 020013 78 ENIKAILSEKVAVLQVS--WGEY--SEELVLEAHSA-G--VKVV-PQVGSFDEARKAVNAGVDAIIVQGREAGGHVI--- 146 (332)
Q Consensus 78 ~~~~~~~~~~~~~I~~~--~g~~--~~~~i~~~~~~-g--~~v~-~~v~s~~~a~~a~~~g~D~ivv~G~eaGGh~~--- 146 (332)
+.++.+.+.|+|+|.+. .|.. ..+.++.+++. + +.|+ .+|.+.+.++.+.++|+|+|.+ |...|..+.
T Consensus 245 ~ra~~Lv~aGvd~i~vd~a~g~~~~~~~~i~~ir~~~~~~~~V~aGnV~t~e~a~~li~aGAd~I~v-g~g~Gs~c~tr~ 323 (502)
T PRK07107 245 ERVPALVEAGADVLCIDSSEGYSEWQKRTLDWIREKYGDSVKVGAGNVVDREGFRYLAEAGADFVKV-GIGGGSICITRE 323 (502)
T ss_pred HHHHHHHHhCCCeEeecCcccccHHHHHHHHHHHHhCCCCceEEeccccCHHHHHHHHHcCCCEEEE-CCCCCcCccccc
Confidence 44566778899998763 1210 13456666653 2 4444 3588999999999999999998 554443221
Q ss_pred ---CCCchhhhHHHHHHHhC------CCCCcEEeecCcCCHHHHHHHHHcCcceeeeccccccCccCCCC
Q 020013 147 ---GQDGLISLLPMVVDLIG------DRDIPIIAAGGIVDARGYVAALSLGAQGICLGTRFVASEESYAH 207 (332)
Q Consensus 147 ---~~~~~~~ll~~i~~~~~------~~~iPviaaGGI~~~~~v~~al~~GA~gV~~GT~fl~t~Es~~~ 207 (332)
...+.+..++++.++.. +.++|||+.|||.++.|+.+||++|||+|++|+.|..|.|||..
T Consensus 324 ~~~~g~~~~~ai~~~~~a~~~~~~~~g~~~~viadgGir~~gdi~KAla~GA~~vm~G~~~ag~~espg~ 393 (502)
T PRK07107 324 QKGIGRGQATALIEVAKARDEYFEETGVYIPICSDGGIVYDYHMTLALAMGADFIMLGRYFARFDESPTN 393 (502)
T ss_pred ccCCCccHHHHHHHHHHHHHHHHhhcCCcceEEEcCCCCchhHHHHHHHcCCCeeeeChhhhccccCCCc
Confidence 12356777777777542 11389999999999999999999999999999999999999875
|
|
| >COG0135 TrpF Phosphoribosylanthranilate isomerase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.45 E-value=6.2e-12 Score=109.64 Aligned_cols=169 Identities=23% Similarity=0.336 Sum_probs=128.8
Q ss_pred CCCcHHHHHHHHhCC--CceeecC---CCCCCHHHHHHHHHHHHhhcCCcEEEEeecCCCCHHHHHHHHhcCCcEEEEcc
Q 020013 21 DISGPELVAAVANAG--GLGLLRA---PDWEAPDYLRDLIRKTRSLTERPFGVGVVLAFPHNENIKAILSEKVAVLQVSW 95 (332)
Q Consensus 21 g~s~~~la~avs~aG--glG~i~~---~~~~~~e~~~~~i~~~r~~~~~p~gvnl~~~~~~~~~~~~~~~~~~~~I~~~~ 95 (332)
|+++++.+.+++.+| .+|+|.. +++.+++.++++...+.. . .-|+++.+.+.++..+++.+.++++|++|
T Consensus 8 Glt~~eda~~a~~~gad~iG~If~~~SpR~Vs~~~a~~i~~~v~~---~-~~VgVf~n~~~~~i~~i~~~~~ld~VQlH- 82 (208)
T COG0135 8 GLTRLEDAKAAAKAGADYIGFIFVPKSPRYVSPEQAREIASAVPK---V-KVVGVFVNESIEEILEIAEELGLDAVQLH- 82 (208)
T ss_pred CCCCHHHHHHHHHcCCCEEEEEEcCCCCCcCCHHHHHHHHHhCCC---C-CEEEEECCCCHHHHHHHHHhcCCCEEEEC-
Confidence 689999999999998 5999975 356788888777776654 1 25788888876777778888899999999
Q ss_pred CCCcHHHHHHHHhCC-CEEEEecC--CH--HHHHHHHHcCCCEEEEecCC---CCcccCCCCchhhhHHHHHHHhCCCCC
Q 020013 96 GEYSEELVLEAHSAG-VKVVPQVG--SF--DEARKAVNAGVDAIIVQGRE---AGGHVIGQDGLISLLPMVVDLIGDRDI 167 (332)
Q Consensus 96 g~~~~~~i~~~~~~g-~~v~~~v~--s~--~~a~~a~~~g~D~ivv~G~e---aGGh~~~~~~~~~ll~~i~~~~~~~~i 167 (332)
|.++.++++.+++.. ++||..+. +. .+.......-+|.++++... .||. |....|.+++.. .. ..
T Consensus 83 G~e~~~~~~~l~~~~~~~v~kai~v~~~~~~~~~~~~~~~~d~~LlDa~~~~~~GGt--G~~fDW~~l~~~--~~---~~ 155 (208)
T COG0135 83 GDEDPEYIDQLKEELGVPVIKAISVSEEGDLELAAREEGPVDAILLDAKVPGLPGGT--GQTFDWNLLPKL--RL---SK 155 (208)
T ss_pred CCCCHHHHHHHHhhcCCceEEEEEeCCccchhhhhhccCCccEEEEcCCCCCCCCCC--CcEECHHHhccc--cc---cC
Confidence 677889999998764 77775443 22 23344555679999998753 3443 455678888876 12 67
Q ss_pred cEEeecCcCCHHHHHHHHHcCc-ceeeeccccccCc
Q 020013 168 PIIAAGGIVDARGYVAALSLGA-QGICLGTRFVASE 202 (332)
Q Consensus 168 PviaaGGI~~~~~v~~al~~GA-~gV~~GT~fl~t~ 202 (332)
|++.|||| +++|+.++++++. .||-+-|..=..+
T Consensus 156 ~~~LAGGL-~p~NV~~ai~~~~p~gvDvSSGVE~~p 190 (208)
T COG0135 156 PVMLAGGL-NPDNVAEAIALGPPYGVDVSSGVESSP 190 (208)
T ss_pred CEEEECCC-CHHHHHHHHHhcCCceEEeccccccCC
Confidence 99999999 9999999999988 9999988754443
|
|
| >PF01070 FMN_dh: FMN-dependent dehydrogenase; InterPro: IPR000262 A number of oxidoreductases that act on alpha-hydroxy acids and which are FMN-containing flavoproteins have been shown [, , ] to be structurally related | Back alignment and domain information |
|---|
Probab=99.44 E-value=5.7e-12 Score=119.50 Aligned_cols=189 Identities=26% Similarity=0.334 Sum_probs=126.3
Q ss_pred hhcC--CccceecCCCCCC-CC----cHHHHHHHHhCCCceeecCCCCCCHHHHHHHHHHHHhhcCCcEEEEeecCCCC-
Q 020013 5 GMLG--FEYGIVQAPLGPD-IS----GPELVAAVANAGGLGLLRAPDWEAPDYLRDLIRKTRSLTERPFGVGVVLAFPH- 76 (332)
Q Consensus 5 ~~l~--~~~Pii~apM~~g-~s----~~~la~avs~aGglG~i~~~~~~~~e~~~~~i~~~r~~~~~p~gvnl~~~~~~- 76 (332)
++|| +..||+.+||+++ .. +..++.+..++|-.-.++..+..+.|++ .+. ...|...++..+...
T Consensus 51 ~~lG~~~s~P~~iaP~~~~~l~~~~ge~~lAraA~~~Gi~~~lss~s~~~~e~i----a~~---~~~~~~~Qly~~~d~~ 123 (356)
T PF01070_consen 51 TFLGQKLSMPFFIAPMGGGGLAHPDGERALARAAAKAGIPMMLSSQSSASLEEI----AAA---SGGPLWFQLYPPRDRE 123 (356)
T ss_dssp EETTEEESSSEEEEEESTGGGTSTTHHHHHHHHHHHHTSEEEEETTCSSCHHHH----HHH---CTSEEEEEEEGBSSHH
T ss_pred eeCCccCCCCeEEcchhhhhhhccchHHHHHHHHhccCcceeccCCccCCHHHH----Hhh---ccCCeEEEEEEecCHH
Confidence 5666 5689999999732 11 3567777778886666665433444433 222 236777887765432
Q ss_pred --HHHHHHHHhcCCcEEEEccCC----------------CcH--------------------------------------
Q 020013 77 --NENIKAILSEKVAVLQVSWGE----------------YSE-------------------------------------- 100 (332)
Q Consensus 77 --~~~~~~~~~~~~~~I~~~~g~----------------~~~-------------------------------------- 100 (332)
.+.++.+.+.|++++.++... ++.
T Consensus 124 ~~~~~i~rAe~aG~~Al~vtvD~~~~~~R~~d~r~g~~~p~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~ 203 (356)
T PF01070_consen 124 LTRDLIRRAEAAGAKALVVTVDAPQEGNRERDLRNGFSVPPKLSPRNLLDGASHPRSGMPRLENNEAPPPGDNGAAAARF 203 (356)
T ss_dssp HHHHHHHHHHHTTCSEEEEETSHSSHHHBHHHHHHTCCCSTTHCTTCGTTTTTTT-TTTGG-----CSSSSTSTCHHHHH
T ss_pred HHHHHHHHhhcCCCCEEEEECcCcccCCcccccccccCCCcccccccccccccCcccccccccccccccCCCcchhHHHH
Confidence 345666677888887654100 000
Q ss_pred -----------HHHHHHH-hCCCEEE-EecCCHHHHHHHHHcCCCEEEEecCCCCccc-CCCCchhhhHHHHHHHhCCCC
Q 020013 101 -----------ELVLEAH-SAGVKVV-PQVGSFDEARKAVNAGVDAIIVQGREAGGHV-IGQDGLISLLPMVVDLIGDRD 166 (332)
Q Consensus 101 -----------~~i~~~~-~~g~~v~-~~v~s~~~a~~a~~~g~D~ivv~G~eaGGh~-~~~~~~~~ll~~i~~~~~~~~ 166 (332)
+.++.++ ...++++ ..|.+.++++.+.+.|+|+|++.|. ||.. +...++...|++++++++. +
T Consensus 204 ~~~~~~~~~~w~~i~~~~~~~~~pvivKgv~~~~da~~~~~~G~~~i~vs~h--GGr~~d~~~~~~~~L~~i~~~~~~-~ 280 (356)
T PF01070_consen 204 VGSQFDPSLTWDDIEWIRKQWKLPVIVKGVLSPEDAKRAVDAGVDGIDVSNH--GGRQLDWGPPTIDALPEIRAAVGD-D 280 (356)
T ss_dssp HHCHB-TT-SHHHHHHHHHHCSSEEEEEEE-SHHHHHHHHHTT-SEEEEESG--TGTSSTTS-BHHHHHHHHHHHHTT-S
T ss_pred HHHhcCCCCCHHHHHHHhcccCCceEEEecccHHHHHHHHhcCCCEEEecCC--CcccCccccccccccHHHHhhhcC-C
Confidence 1122333 3466655 5689999999999999999999776 4432 2235778889999998853 7
Q ss_pred CcEEeecCcCCHHHHHHHHHcCcceeeeccccccCcc
Q 020013 167 IPIIAAGGIVDARGYVAALSLGAQGICLGTRFVASEE 203 (332)
Q Consensus 167 iPviaaGGI~~~~~v~~al~~GA~gV~~GT~fl~t~E 203 (332)
+|||++|||.++.|+.+++++||++|.+|..|+..-.
T Consensus 281 ~~i~~dgGir~g~Dv~kalaLGA~~v~igr~~l~~l~ 317 (356)
T PF01070_consen 281 IPIIADGGIRRGLDVAKALALGADAVGIGRPFLYALA 317 (356)
T ss_dssp SEEEEESS--SHHHHHHHHHTT-SEEEESHHHHHHHH
T ss_pred eeEEEeCCCCCHHHHHHHHHcCCCeEEEccHHHHHHH
Confidence 9999999999999999999999999999999987643
|
These enzymes are: Lactate dehydrogenase (1.1.2.3 from EC), which consists of a dehydrogenase domain and a haem-binding domain called cytochrome b2 and which catalyses the conversion of lactate into pyruvate. Glycolate oxidase (1.1.3.15 from EC) ((S)-2-hydroxy-acid oxidase), a peroxisomal enzyme that catalyses the conversion of glycolate and oxygen to glyoxylate and hydrogen peroxide. Long chain alpha-hydroxy acid oxidase from rat (1.1.3.15 from EC), a peroxisomal enzyme. Lactate 2-monooxygenase (1.13.12.4 from EC) (lactate oxidase) from Mycobacterium smegmatis, which catalyses the conversion of lactate and oxygen to acetate, carbon dioxide and water. (S)-mandelate dehydrogenase from Pseudomonas putida (gene mdlB), which catalyses the reduction of (S)-mandelate to benzoylformate. The first step in the reaction mechanism of these enzymes is the abstraction of the proton from the alpha-carbon of the substrate producing a carbanion which can subsequently attach to the N5 atom of FMN. A conserved histidine has been shown [] to be involved in the removal of the proton. The region around this active site residue is highly conserved and contains an arginine residue which is involved in substrate binding.; GO: 0016491 oxidoreductase activity; PDB: 1VCG_C 1VCF_A 1P0N_B 1P0K_A 2A85_A 2A7P_A 3GIY_A 2A7N_A 3DH7_A 2RDU_A .... |
| >PF01081 Aldolase: KDPG and KHG aldolase; InterPro: IPR000887 4-Hydroxy-2-oxoglutarate aldolase (4 | Back alignment and domain information |
|---|
Probab=99.43 E-value=2.6e-12 Score=111.41 Aligned_cols=163 Identities=23% Similarity=0.360 Sum_probs=118.5
Q ss_pred CCcHHHHHHHHhC---CCceeecCCCCCCHHHHHHHHHHHHh-hcCCcEEEEeecCCCCHHHHHHHHhcCCcEEEEccCC
Q 020013 22 ISGPELVAAVANA---GGLGLLRAPDWEAPDYLRDLIRKTRS-LTERPFGVGVVLAFPHNENIKAILSEKVAVLQVSWGE 97 (332)
Q Consensus 22 ~s~~~la~avs~a---GglG~i~~~~~~~~e~~~~~i~~~r~-~~~~p~gvnl~~~~~~~~~~~~~~~~~~~~I~~~~g~ 97 (332)
..+++.+..++++ ||+.++.. .+.+++. .+.|+++++ ..+.-+|++-+.+ .++++.+.+.|++++... +
T Consensus 16 ~~~~~~a~~~~~al~~gGi~~iEi-T~~t~~a-~~~I~~l~~~~p~~~vGAGTV~~---~e~a~~a~~aGA~FivSP-~- 88 (196)
T PF01081_consen 16 GDDPEDAVPIAEALIEGGIRAIEI-TLRTPNA-LEAIEALRKEFPDLLVGAGTVLT---AEQAEAAIAAGAQFIVSP-G- 88 (196)
T ss_dssp TSSGGGHHHHHHHHHHTT--EEEE-ETTSTTH-HHHHHHHHHHHTTSEEEEES--S---HHHHHHHHHHT-SEEEES-S-
T ss_pred cCCHHHHHHHHHHHHHCCCCEEEE-ecCCccH-HHHHHHHHHHCCCCeeEEEeccC---HHHHHHHHHcCCCEEECC-C-
Confidence 4455555555553 88999876 4667765 345565554 3456688887764 688999999999999887 3
Q ss_pred CcHHHHHHHHhCCCEEEEecCCHHHHHHHHHcCCCEEEEecCCCCcccCCCCchhhhHHHHHHHhCCCCCcEEeecCcCC
Q 020013 98 YSEELVLEAHSAGVKVVPQVGSFDEARKAVNAGVDAIIVQGREAGGHVIGQDGLISLLPMVVDLIGDRDIPIIAAGGIVD 177 (332)
Q Consensus 98 ~~~~~i~~~~~~g~~v~~~v~s~~~a~~a~~~g~D~ivv~G~eaGGh~~~~~~~~~ll~~i~~~~~~~~iPviaaGGI~~ 177 (332)
..+++++.+++.++++++.+.|+.|+..+.+.|+|.|.+...+. .+-..+++.++.-++ ++|+++.||| +
T Consensus 89 ~~~~v~~~~~~~~i~~iPG~~TptEi~~A~~~G~~~vK~FPA~~-------~GG~~~ik~l~~p~p--~~~~~ptGGV-~ 158 (196)
T PF01081_consen 89 FDPEVIEYAREYGIPYIPGVMTPTEIMQALEAGADIVKLFPAGA-------LGGPSYIKALRGPFP--DLPFMPTGGV-N 158 (196)
T ss_dssp --HHHHHHHHHHTSEEEEEESSHHHHHHHHHTT-SEEEETTTTT-------TTHHHHHHHHHTTTT--T-EEEEBSS---
T ss_pred CCHHHHHHHHHcCCcccCCcCCHHHHHHHHHCCCCEEEEecchh-------cCcHHHHHHHhccCC--CCeEEEcCCC-C
Confidence 46789999999999999999999999999999999999954422 111456777776554 7999999999 7
Q ss_pred HHHHHHHHHcCcceeeeccccccC
Q 020013 178 ARGYVAALSLGAQGICLGTRFVAS 201 (332)
Q Consensus 178 ~~~v~~al~~GA~gV~~GT~fl~t 201 (332)
.+|+.+++++|+.+|.+||.++..
T Consensus 159 ~~N~~~~l~ag~~~vg~Gs~L~~~ 182 (196)
T PF01081_consen 159 PDNLAEYLKAGAVAVGGGSWLFPK 182 (196)
T ss_dssp TTTHHHHHTSTTBSEEEESGGGSH
T ss_pred HHHHHHHHhCCCEEEEECchhcCH
Confidence 899999999999999999987644
|
1.3.16 from EC) (KHG-aldolase) catalyzes the interconversion of 4-hydroxy-2-oxoglutarate into pyruvate and glyoxylate. Phospho-2-dehydro-3-deoxygluconate aldolase (4.1.2.14 from EC) (KDPG-aldolase) catalyzes the interconversion of 6-phospho-2-dehydro-3-deoxy-D-gluconate into pyruvate and glyceraldehyde 3-phosphate. These two enzymes are structurally and functionally related []. They are both homotrimeric proteins of approximately 220 amino-acid residues. They are class I aldolases whose catalytic mechanism involves the formation of a Schiff-base intermediate between the substrate and the epsilon-amino group of a lysine residue. In both enzymes, an arginine is required for catalytic activity.; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 3VCR_A 1FQ0_A 1EUN_A 1EUA_B 1FWR_A 2C0A_B 1WBH_A 1WAU_A 2YW3_B 2YW4_A .... |
| >PRK07565 dihydroorotate dehydrogenase 2; Reviewed | Back alignment and domain information |
|---|
Probab=99.42 E-value=1.3e-11 Score=116.73 Aligned_cols=151 Identities=14% Similarity=0.214 Sum_probs=102.7
Q ss_pred HHHHHHHHHHHHhhcCCcEEEEeecCCCC--HHHHHHHHhcCCcEEEEccCCCcH--------------HHHHHHHh-CC
Q 020013 48 PDYLRDLIRKTRSLTERPFGVGVVLAFPH--NENIKAILSEKVAVLQVSWGEYSE--------------ELVLEAHS-AG 110 (332)
Q Consensus 48 ~e~~~~~i~~~r~~~~~p~gvnl~~~~~~--~~~~~~~~~~~~~~I~~~~g~~~~--------------~~i~~~~~-~g 110 (332)
.|...+.+..+++..+.|+.+|+...... .+..+.+.+.++|+|++++++++. ++++.+++ ..
T Consensus 86 ~d~~~~~i~~~~~~~~~pvi~sI~g~~~~e~~~~a~~~~~agad~ielN~scpp~~~~~~g~~~~~~~~eil~~v~~~~~ 165 (334)
T PRK07565 86 PEEYLELIRRAKEAVDIPVIASLNGSSAGGWVDYARQIEQAGADALELNIYYLPTDPDISGAEVEQRYLDILRAVKSAVS 165 (334)
T ss_pred HHHHHHHHHHHHHhcCCcEEEEeccCCHHHHHHHHHHHHHcCCCEEEEeCCCCCCCCCCccccHHHHHHHHHHHHHhccC
Confidence 34455566666555578999999775542 234455566789999997654221 33455554 36
Q ss_pred CEEEEecC----C-HHHHHHHHHcCCCEEEEecCCCCccc-------------CCCC---chhhhHHHHHHHhCCCCCcE
Q 020013 111 VKVVPQVG----S-FDEARKAVNAGVDAIIVQGREAGGHV-------------IGQD---GLISLLPMVVDLIGDRDIPI 169 (332)
Q Consensus 111 ~~v~~~v~----s-~~~a~~a~~~g~D~ivv~G~eaGGh~-------------~~~~---~~~~ll~~i~~~~~~~~iPv 169 (332)
++|+.+.+ + .+.++.+.+.|+|+|++.+.-.+... .++. ..+..+.++++.+ ++||
T Consensus 166 iPV~vKl~p~~~~~~~~a~~l~~~G~dgI~~~n~~~~~~~d~~~~~~~~~~glsg~~~~~~al~~v~~~~~~~---~ipI 242 (334)
T PRK07565 166 IPVAVKLSPYFSNLANMAKRLDAAGADGLVLFNRFYQPDIDLETLEVVPGLVLSTPAELRLPLRWIAILSGRV---GADL 242 (334)
T ss_pred CcEEEEeCCCchhHHHHHHHHHHcCCCeEEEECCcCCCCcChhhcccccCCCCCCchhhhHHHHHHHHHHhhc---CCCE
Confidence 88887743 2 24456678899999999775322211 0111 1234455555555 7999
Q ss_pred EeecCcCCHHHHHHHHHcCcceeeeccccccC
Q 020013 170 IAAGGIVDARGYVAALSLGAQGICLGTRFVAS 201 (332)
Q Consensus 170 iaaGGI~~~~~v~~al~~GA~gV~~GT~fl~t 201 (332)
|+.|||.|++|+.++|.+||++|++||.++.-
T Consensus 243 ig~GGI~s~~Da~e~l~aGA~~V~v~t~~~~~ 274 (334)
T PRK07565 243 AATTGVHDAEDVIKMLLAGADVVMIASALLRH 274 (334)
T ss_pred EEECCCCCHHHHHHHHHcCCCceeeehHHhhh
Confidence 99999999999999999999999999999973
|
|
| >PRK06015 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional | Back alignment and domain information |
|---|
Probab=99.42 E-value=1.2e-11 Score=107.61 Aligned_cols=161 Identities=21% Similarity=0.270 Sum_probs=125.5
Q ss_pred CCcHHHHHHHHhC---CCceeecCCCCCCHHHHHHHHHHHHhh-cCCcEEEEeecCCCCHHHHHHHHhcCCcEEEEccCC
Q 020013 22 ISGPELVAAVANA---GGLGLLRAPDWEAPDYLRDLIRKTRSL-TERPFGVGVVLAFPHNENIKAILSEKVAVLQVSWGE 97 (332)
Q Consensus 22 ~s~~~la~avs~a---GglG~i~~~~~~~~e~~~~~i~~~r~~-~~~p~gvnl~~~~~~~~~~~~~~~~~~~~I~~~~g~ 97 (332)
..+++.+..++++ ||+.++.. .+.+|+.+ +.|+++++. .+.-+|++-+++ .+.++.+.+.|++++... +
T Consensus 12 ~~~~~~a~~ia~al~~gGi~~iEi-t~~tp~a~-~~I~~l~~~~~~~~vGAGTVl~---~e~a~~ai~aGA~FivSP-~- 84 (201)
T PRK06015 12 IDDVEHAVPLARALAAGGLPAIEI-TLRTPAAL-DAIRAVAAEVEEAIVGAGTILN---AKQFEDAAKAGSRFIVSP-G- 84 (201)
T ss_pred cCCHHHHHHHHHHHHHCCCCEEEE-eCCCccHH-HHHHHHHHHCCCCEEeeEeCcC---HHHHHHHHHcCCCEEECC-C-
Confidence 4566666666654 88999977 46677654 456666543 345578887764 678999999999999887 3
Q ss_pred CcHHHHHHHHhCCCEEEEecCCHHHHHHHHHcCCCEEEEecCCCCcccCCCCchhhhHHHHHHHhCCCCCcEEeecCcCC
Q 020013 98 YSEELVLEAHSAGVKVVPQVGSFDEARKAVNAGVDAIIVQGREAGGHVIGQDGLISLLPMVVDLIGDRDIPIIAAGGIVD 177 (332)
Q Consensus 98 ~~~~~i~~~~~~g~~v~~~v~s~~~a~~a~~~g~D~ivv~G~eaGGh~~~~~~~~~ll~~i~~~~~~~~iPviaaGGI~~ 177 (332)
..+++++.+++.++++++.+.|+.|+..+.++|+|.|.+...+.-| -..+++.++.-++ ++|+++.||| +
T Consensus 85 ~~~~vi~~a~~~~i~~iPG~~TptEi~~A~~~Ga~~vK~FPa~~~G-------G~~yikal~~plp--~~~l~ptGGV-~ 154 (201)
T PRK06015 85 TTQELLAAANDSDVPLLPGAATPSEVMALREEGYTVLKFFPAEQAG-------GAAFLKALSSPLA--GTFFCPTGGI-S 154 (201)
T ss_pred CCHHHHHHHHHcCCCEeCCCCCHHHHHHHHHCCCCEEEECCchhhC-------CHHHHHHHHhhCC--CCcEEecCCC-C
Confidence 4678999999999999999999999999999999999996532211 1346667766664 7999999999 8
Q ss_pred HHHHHHHHHcCcceeeeccccc
Q 020013 178 ARGYVAALSLGAQGICLGTRFV 199 (332)
Q Consensus 178 ~~~v~~al~~GA~gV~~GT~fl 199 (332)
.+|+.+++++|+..+..||.+.
T Consensus 155 ~~n~~~~l~ag~~~~~ggs~l~ 176 (201)
T PRK06015 155 LKNARDYLSLPNVVCVGGSWVA 176 (201)
T ss_pred HHHHHHHHhCCCeEEEEchhhC
Confidence 9999999999988777777665
|
|
| >TIGR00742 yjbN tRNA dihydrouridine synthase A | Back alignment and domain information |
|---|
Probab=99.41 E-value=1e-11 Score=116.14 Aligned_cols=187 Identities=16% Similarity=0.107 Sum_probs=127.5
Q ss_pred ceecCCCCCCCCcHHHHHHHHhCCCceeecCCCCCCHHHHHHH-H-HHHH-hhcCCcEEEEeecCCCC--HHHHHHHHhc
Q 020013 12 GIVQAPLGPDISGPELVAAVANAGGLGLLRAPDWEAPDYLRDL-I-RKTR-SLTERPFGVGVVLAFPH--NENIKAILSE 86 (332)
Q Consensus 12 Pii~apM~~g~s~~~la~avs~aGglG~i~~~~~~~~e~~~~~-i-~~~r-~~~~~p~gvnl~~~~~~--~~~~~~~~~~ 86 (332)
|++.|||. |+|+..+..-+...|+.++..++ +.+.+.+... . +.+. .-.+.|+.++++.++++ .+..+.+.+.
T Consensus 2 ~~~lAPM~-g~Td~~fR~l~~~~g~~~~~~TE-Mv~a~~l~~~~~~~~l~~~~~e~p~~vQl~g~~p~~~~~aA~~~~~~ 79 (318)
T TIGR00742 2 RFSVAPML-DWTDRHFRYFLRLLSKHTLLYTE-MITAKAIIHGDKKDILKFSPEESPVALQLGGSDPNDLAKCAKIAEKR 79 (318)
T ss_pred CEEEECCC-CCcCHHHHHHHHHhCCCCEEEeC-CEEEhhhhccCHHHHcccCCCCCcEEEEEccCCHHHHHHHHHHHHhC
Confidence 78999998 89999999888777766666553 3333222111 1 1111 11367999999988763 1233445567
Q ss_pred CCcEEEEccCCCcH-------------------HHHHHHHh-CCCEEEEecC-------C----HHHHHHHHHcCCCEEE
Q 020013 87 KVAVLQVSWGEYSE-------------------ELVLEAHS-AGVKVVPQVG-------S----FDEARKAVNAGVDAII 135 (332)
Q Consensus 87 ~~~~I~~~~g~~~~-------------------~~i~~~~~-~g~~v~~~v~-------s----~~~a~~a~~~g~D~iv 135 (332)
++|.|.++.|+|.. ++++.+++ .+++|..++. + .+-++.+.+.|+|.|.
T Consensus 80 g~d~IDlN~GCP~~~v~~~g~Gs~Ll~~p~~~~~iv~av~~~~~~PVsvKiR~g~~~~~~~~~~~~~~~~l~~~G~~~it 159 (318)
T TIGR00742 80 GYDEINLNVGCPSDRVQNGNFGACLMGNADLVADCVKAMQEAVNIPVTVKHRIGIDPLDSYEFLCDFVEIVSGKGCQNFI 159 (318)
T ss_pred CCCEEEEECCCCHHHhCCCCeehHhhcCHHHHHHHHHHHHHHhCCCeEEEEecCCCCcchHHHHHHHHHHHHHcCCCEEE
Confidence 89999999988633 23334444 3677776652 1 1235567789999999
Q ss_pred EecCCC--CcccCC-----CCchhhhHHHHHHHhCCCCCcEEeecCcCCHHHHHHHHHcCcceeeeccccccCcc
Q 020013 136 VQGREA--GGHVIG-----QDGLISLLPMVVDLIGDRDIPIIAAGGIVDARGYVAALSLGAQGICLGTRFVASEE 203 (332)
Q Consensus 136 v~G~ea--GGh~~~-----~~~~~~ll~~i~~~~~~~~iPviaaGGI~~~~~v~~al~~GA~gV~~GT~fl~t~E 203 (332)
+.|... .|..+. ....|..+.++++.+. ++|||+.|||.+.+++.+++. |||||++|++++..+.
T Consensus 160 vHgRt~~~qg~sg~~~~~~~~~~~~~i~~vk~~~~--~ipVi~NGdI~s~~da~~~l~-g~dgVMigRgal~nP~ 231 (318)
T TIGR00742 160 VHARKAWLSGLSPKENREIPPLRYERVYQLKKDFP--HLTIEINGGIKNSEQIKQHLS-HVDGVMVGREAYENPY 231 (318)
T ss_pred EeCCchhhcCCCccccccCCchhHHHHHHHHHhCC--CCcEEEECCcCCHHHHHHHHh-CCCEEEECHHHHhCCH
Confidence 998753 343211 1124777777777653 699999999999999999996 9999999999998643
|
Members of this family show a distant relationship to alpha/beta (TIM) barrel enzymes such as dihydroorotate dehydrogenase and glycolate oxidase. |
| >TIGR00343 pyridoxal 5'-phosphate synthase, synthase subunit Pdx1 | Back alignment and domain information |
|---|
Probab=99.41 E-value=1.6e-11 Score=110.41 Aligned_cols=173 Identities=21% Similarity=0.280 Sum_probs=126.8
Q ss_pred CCCcHHHHHHHHhCCCceeecCCC-------------CCCHHHHHHHHHHHHhhcCCcEEEEeecCCCCHHHHHHHHhcC
Q 020013 21 DISGPELVAAVANAGGLGLLRAPD-------------WEAPDYLRDLIRKTRSLTERPFGVGVVLAFPHNENIKAILSEK 87 (332)
Q Consensus 21 g~s~~~la~avs~aGglG~i~~~~-------------~~~~e~~~~~i~~~r~~~~~p~gvnl~~~~~~~~~~~~~~~~~ 87 (332)
-+++++.+.-..+||...++...+ ..+|+ .|+++++..+.|+---+-. .+....+.+.+.|
T Consensus 16 dv~~~eqa~iae~aga~avm~le~~p~d~r~~ggv~R~~~p~----~I~~I~~~V~iPVig~~ki--gh~~Ea~~L~~~G 89 (287)
T TIGR00343 16 DVVNPEQAKIAEEAGAVAVMALERVPADIRASGGVARMSDPK----MIKEIMDAVSIPVMAKVRI--GHFVEAQILEALG 89 (287)
T ss_pred EeCCHHHHHHHHHcCceEEEeeccCchhhHhcCCeeecCCHH----HHHHHHHhCCCCEEEEeec--cHHHHHHHHHHcC
Confidence 478999999888999999887532 12343 3566666667775322111 1234577888999
Q ss_pred CcEEEEccCC-CcHHHHHHHHh-CCCEEEEecCCHHHHHHHHHcCCCEEEEecCCCCcc---------------------
Q 020013 88 VAVLQVSWGE-YSEELVLEAHS-AGVKVVPQVGSFDEARKAVNAGVDAIIVQGREAGGH--------------------- 144 (332)
Q Consensus 88 ~~~I~~~~g~-~~~~~i~~~~~-~g~~v~~~v~s~~~a~~a~~~g~D~ivv~G~eaGGh--------------------- 144 (332)
+|+|.-+-=. |..+++...|. .++++++.+.+.+|+.++.+.|+|.|--.|....|.
T Consensus 90 vDiIDeTe~lrPade~~~~~K~~f~vpfmad~~~l~EAlrai~~GadmI~Tt~e~gTg~v~~av~hlr~~~~~~~~~~~~ 169 (287)
T TIGR00343 90 VDYIDESEVLTPADWTFHIDKKKFKVPFVCGARDLGEALRRINEGAAMIRTKGEAGTGNIVEAVRHMRKINEEIRQIQNM 169 (287)
T ss_pred CCEEEccCCCCcHHHHHHHHHHHcCCCEEccCCCHHHHHHHHHCCCCEEeccccCCCccHHHHHHHHHHHHHHHHHHhcc
Confidence 9999643211 23466666665 489999999999999999999999998776533332
Q ss_pred ---------cCCCCchhhhHHHHHHHhCCCCCcEE--eecCcCCHHHHHHHHHcCcceeeeccccccCc
Q 020013 145 ---------VIGQDGLISLLPMVVDLIGDRDIPII--AAGGIVDARGYVAALSLGAQGICLGTRFVASE 202 (332)
Q Consensus 145 ---------~~~~~~~~~ll~~i~~~~~~~~iPvi--aaGGI~~~~~v~~al~~GA~gV~~GT~fl~t~ 202 (332)
.......+.++.++++.. ++||+ +.|||.|++++..++.+||+||.+||+++.+.
T Consensus 170 ~~~~~~~~~a~~~~~~~elLkei~~~~---~iPVV~fAiGGI~TPedAa~~melGAdGVaVGSaI~ks~ 235 (287)
T TIGR00343 170 LEEEDLAAVAKELRVPVELLLEVLKLG---KLPVVNFAAGGVATPADAALMMQLGADGVFVGSGIFKSS 235 (287)
T ss_pred cchhHHhhhhcccCCCHHHHHHHHHhC---CCCEEEeccCCCCCHHHHHHHHHcCCCEEEEhHHhhcCC
Confidence 000123577888888765 79998 99999999999999999999999999999754
|
This protein had been believed to be a singlet oxygen resistance protein. Subsequent work showed that it is a protein of pyridoxine (vitamin B6) biosynthesis, and that pyridoxine quenches the highly toxic singlet form of oxygen produced by light in the presence of certain chemicals. |
| >cd00452 KDPG_aldolase KDPG and KHG aldolase | Back alignment and domain information |
|---|
Probab=99.40 E-value=2.1e-11 Score=106.07 Aligned_cols=148 Identities=20% Similarity=0.277 Sum_probs=115.3
Q ss_pred CCCceeecCCCCCCHHHHHHHHHHHHhhc-CCcEEEEeecCCCCHHHHHHHHhcCCcEEEEccCCCcHHHHHHHHhCCCE
Q 020013 34 AGGLGLLRAPDWEAPDYLRDLIRKTRSLT-ERPFGVGVVLAFPHNENIKAILSEKVAVLQVSWGEYSEELVLEAHSAGVK 112 (332)
Q Consensus 34 aGglG~i~~~~~~~~e~~~~~i~~~r~~~-~~p~gvnl~~~~~~~~~~~~~~~~~~~~I~~~~g~~~~~~i~~~~~~g~~ 112 (332)
.||+..+.. ++.++.. .+.++++++.. +..+|.+.+.. .+.++.+.+.|+++|++.. ...++++..+..+++
T Consensus 27 ~~G~~~vev-~~~~~~~-~~~i~~l~~~~~~~~iGag~v~~---~~~~~~a~~~Ga~~i~~p~--~~~~~~~~~~~~~~~ 99 (190)
T cd00452 27 EGGIRAIEI-TLRTPGA-LEAIRALRKEFPEALIGAGTVLT---PEQADAAIAAGAQFIVSPG--LDPEVVKAANRAGIP 99 (190)
T ss_pred HCCCCEEEE-eCCChhH-HHHHHHHHHHCCCCEEEEEeCCC---HHHHHHHHHcCCCEEEcCC--CCHHHHHHHHHcCCc
Confidence 477888876 3455553 44677776654 35667766653 5788999999999998763 346788888888999
Q ss_pred EEEecCCHHHHHHHHHcCCCEEEEecCCCCcccCCCCchhhhHHHHHHHhCCCCCcEEeecCcCCHHHHHHHHHcCccee
Q 020013 113 VVPQVGSFDEARKAVNAGVDAIIVQGREAGGHVIGQDGLISLLPMVVDLIGDRDIPIIAAGGIVDARGYVAALSLGAQGI 192 (332)
Q Consensus 113 v~~~v~s~~~a~~a~~~g~D~ivv~G~eaGGh~~~~~~~~~ll~~i~~~~~~~~iPviaaGGI~~~~~v~~al~~GA~gV 192 (332)
+++.+.|++|+..+.+.|+|+|.+... .. ....+++.++..++ ++|+++.||| +.+++.+++.+|+++|
T Consensus 100 ~i~gv~t~~e~~~A~~~Gad~i~~~p~-------~~-~g~~~~~~l~~~~~--~~p~~a~GGI-~~~n~~~~~~~G~~~v 168 (190)
T cd00452 100 LLPGVATPTEIMQALELGADIVKLFPA-------EA-VGPAYIKALKGPFP--QVRFMPTGGV-SLDNAAEWLAAGVVAV 168 (190)
T ss_pred EECCcCCHHHHHHHHHCCCCEEEEcCC-------cc-cCHHHHHHHHhhCC--CCeEEEeCCC-CHHHHHHHHHCCCEEE
Confidence 999999999999999999999988421 11 13456666665543 5899999999 9999999999999999
Q ss_pred eeccccc
Q 020013 193 CLGTRFV 199 (332)
Q Consensus 193 ~~GT~fl 199 (332)
.+|+.+.
T Consensus 169 ~v~s~i~ 175 (190)
T cd00452 169 GGGSLLP 175 (190)
T ss_pred EEchhcc
Confidence 9999987
|
This family belongs to the class I adolases whose reaction mechanism involves Schiff base formation between a substrate carbonyl and lysine residue in the active site. 2-keto-3-deoxy-6-phosphogluconate (KDPG) aldolase, is best known for its role in the Entner-Doudoroff pathway of bacteria, where it catalyzes the reversible cleavage of KDPG to pyruvate and glyceraldehyde-3-phosphate. 2-keto-4-hydroxyglutarate (KHG) aldolase, which has enzymatic specificity toward glyoxylate, forming KHG in the presence of pyruvate, and is capable of regulating glyoxylate levels in the glyoxylate bypass, an alternate pathway when bacteria are grown on acetate carbon sources. |
| >COG3010 NanE Putative N-acetylmannosamine-6-phosphate epimerase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.40 E-value=4e-11 Score=102.19 Aligned_cols=172 Identities=19% Similarity=0.311 Sum_probs=121.9
Q ss_pred HHHHHHHhCCCceeecCCCCCCHHHHHHHHHHHHhhcCCcEEEEeecC---------CCCHHHHHHHHhcCCcEEEEccC
Q 020013 26 ELVAAVANAGGLGLLRAPDWEAPDYLRDLIRKTRSLTERPFGVGVVLA---------FPHNENIKAILSEKVAVLQVSWG 96 (332)
Q Consensus 26 ~la~avs~aGglG~i~~~~~~~~e~~~~~i~~~r~~~~~p~gvnl~~~---------~~~~~~~~~~~~~~~~~I~~~~g 96 (332)
.+|.|...+|..|+= . .+.+. ++.+|+.++.|+- +++-. .|..+.++.+.+.|+++|.+..-
T Consensus 37 ~mA~Aa~~gGAvgiR-~---~gv~d----Ikai~~~v~vPII-GIiKrd~~~s~v~ITptlkeVd~L~~~Ga~IIA~DaT 107 (229)
T COG3010 37 AMALAAEQGGAVGIR-I---EGVED----IKAIRAVVDVPII-GIIKRDYPDSPVRITPTLKEVDALAEAGADIIAFDAT 107 (229)
T ss_pred HHHHHHHhCCcceEe-e---cchhh----HHHHHhhCCCCeE-EEEecCCCCCCceecccHHHHHHHHHCCCcEEEeecc
Confidence 344444444666652 2 23333 5567777777752 22211 12356688899999999988631
Q ss_pred C------CcHHHHHHHHhCCCEEEEecCCHHHHHHHHHcCCCEEEE--ecCCCCcccC-CCCchhhhHHHHHHHhCCCCC
Q 020013 97 E------YSEELVLEAHSAGVKVVPQVGSFDEARKAVNAGVDAIIV--QGREAGGHVI-GQDGLISLLPMVVDLIGDRDI 167 (332)
Q Consensus 97 ~------~~~~~i~~~~~~g~~v~~~v~s~~~a~~a~~~g~D~ivv--~G~eaGGh~~-~~~~~~~ll~~i~~~~~~~~i 167 (332)
. ...+++++.|..|...+..++|++|...+.+.|+|+|-- .|+. ++.. ...+.+.+++++.+. ++
T Consensus 108 ~R~RP~~~~~~~i~~~k~~~~l~MAD~St~ee~l~a~~~G~D~IGTTLsGYT--~~~~~~~~pDf~lvk~l~~~----~~ 181 (229)
T COG3010 108 DRPRPDGDLEELIARIKYPGQLAMADCSTFEEGLNAHKLGFDIIGTTLSGYT--GYTEKPTEPDFQLVKQLSDA----GC 181 (229)
T ss_pred cCCCCcchHHHHHHHhhcCCcEEEeccCCHHHHHHHHHcCCcEEeccccccc--CCCCCCCCCcHHHHHHHHhC----CC
Confidence 1 234677777888999999999999999999999999853 3432 2221 224679999998873 79
Q ss_pred cEEeecCcCCHHHHHHHHHcCcceeeeccccccCccCCCCHHHHHHH
Q 020013 168 PIIAAGGIVDARGYVAALSLGAQGICLGTRFVASEESYAHPEYKRKL 214 (332)
Q Consensus 168 PviaaGGI~~~~~v~~al~~GA~gV~~GT~fl~t~Es~~~~~~k~~~ 214 (332)
+||+.|.+.+|+.+++++.+||++|++|+++-..+| +...|-+++
T Consensus 182 ~vIAEGr~~tP~~Ak~a~~~Ga~aVvVGsAITRp~~--It~~F~~~i 226 (229)
T COG3010 182 RVIAEGRYNTPEQAKKAIEIGADAVVVGSAITRPEE--ITQWFVDAI 226 (229)
T ss_pred eEEeeCCCCCHHHHHHHHHhCCeEEEECcccCCHHH--HHHHHHHHH
Confidence 999999999999999999999999999999877665 334444443
|
|
| >PRK07259 dihydroorotate dehydrogenase 1B; Reviewed | Back alignment and domain information |
|---|
Probab=99.39 E-value=4.3e-11 Score=111.61 Aligned_cols=187 Identities=20% Similarity=0.197 Sum_probs=121.1
Q ss_pred CccceecCCCCCCCCcHHHHHHHHhCCCceeecCCCC----------------------------CCHHHHHHHHHHHHh
Q 020013 9 FEYGIVQAPLGPDISGPELVAAVANAGGLGLLRAPDW----------------------------EAPDYLRDLIRKTRS 60 (332)
Q Consensus 9 ~~~Pii~apM~~g~s~~~la~avs~aGglG~i~~~~~----------------------------~~~e~~~~~i~~~r~ 60 (332)
++.||+.+.=. .-.+.+++.....+| +|++..++. ...+...+.+...+.
T Consensus 11 ~~nPv~~aag~-~~~~~~~~~~~~~~g-~g~v~~kti~~~~~~g~~~pr~~~~~~~~~n~~g~~~~g~~~~~~~~~~~~~ 88 (301)
T PRK07259 11 LKNPVMPASGT-FGFGGEYARFYDLNG-LGAIVTKSTTLEPREGNPTPRIAETPGGMLNAIGLQNPGVDAFIEEELPWLE 88 (301)
T ss_pred CCCCcEECCcC-CCCCHHHHHHhhhcC-CcEEEeCCCCCCCCCCCCCCcEEecCCceeecCCCCCcCHHHHHHHHHHHHh
Confidence 67899987621 134668877775554 555533211 011222222322222
Q ss_pred hcCCcEEEEeecCCCC--HHHHHHHHhcC-CcEEEEccCCC---------------cHHHHHHHHhC-CCEEEEecC-CH
Q 020013 61 LTERPFGVGVVLAFPH--NENIKAILSEK-VAVLQVSWGEY---------------SEELVLEAHSA-GVKVVPQVG-SF 120 (332)
Q Consensus 61 ~~~~p~gvnl~~~~~~--~~~~~~~~~~~-~~~I~~~~g~~---------------~~~~i~~~~~~-g~~v~~~v~-s~ 120 (332)
..+.|+.+|+..+.+. .+..+.+.+.| +|+|.++.++| ..++++.+++. .++|+.+++ +.
T Consensus 89 ~~~~p~i~si~g~~~~~~~~~a~~~~~aG~~D~iElN~~cP~~~~gg~~~~~~~~~~~eiv~~vr~~~~~pv~vKl~~~~ 168 (301)
T PRK07259 89 EFDTPIIANVAGSTEEEYAEVAEKLSKAPNVDAIELNISCPNVKHGGMAFGTDPELAYEVVKAVKEVVKVPVIVKLTPNV 168 (301)
T ss_pred ccCCcEEEEeccCCHHHHHHHHHHHhccCCcCEEEEECCCCCCCCCccccccCHHHHHHHHHHHHHhcCCCEEEEcCCCc
Confidence 2368999999876541 22334455677 99999854331 12455666665 788887765 33
Q ss_pred ----HHHHHHHHcCCCEEEEecCCC-----------------CcccCCC---CchhhhHHHHHHHhCCCCCcEEeecCcC
Q 020013 121 ----DEARKAVNAGVDAIIVQGREA-----------------GGHVIGQ---DGLISLLPMVVDLIGDRDIPIIAAGGIV 176 (332)
Q Consensus 121 ----~~a~~a~~~g~D~ivv~G~ea-----------------GGh~~~~---~~~~~ll~~i~~~~~~~~iPviaaGGI~ 176 (332)
+.++.+.+.|+|+|++.+... ||.. ++ ...+.++.++++.+ ++|||+.|||.
T Consensus 169 ~~~~~~a~~l~~~G~d~i~~~nt~~g~~~~~~~~~~~~~~~~gg~s-g~~~~p~~l~~v~~i~~~~---~ipvi~~GGI~ 244 (301)
T PRK07259 169 TDIVEIAKAAEEAGADGLSLINTLKGMAIDIKTRKPILANVTGGLS-GPAIKPIALRMVYQVYQAV---DIPIIGMGGIS 244 (301)
T ss_pred hhHHHHHHHHHHcCCCEEEEEccccccccccccCceeecCCcCccC-CcCcccccHHHHHHHHHhC---CCCEEEECCCC
Confidence 335667889999998855322 2221 11 12467788888876 79999999999
Q ss_pred CHHHHHHHHHcCcceeeeccccccC
Q 020013 177 DARGYVAALSLGAQGICLGTRFVAS 201 (332)
Q Consensus 177 ~~~~v~~al~~GA~gV~~GT~fl~t 201 (332)
+++++.+++.+|||+|++||+++.-
T Consensus 245 ~~~da~~~l~aGAd~V~igr~ll~~ 269 (301)
T PRK07259 245 SAEDAIEFIMAGASAVQVGTANFYD 269 (301)
T ss_pred CHHHHHHHHHcCCCceeEcHHHhcC
Confidence 9999999999999999999999983
|
|
| >cd00331 IGPS Indole-3-glycerol phosphate synthase (IGPS); an enzyme in the tryptophan biosynthetic pathway, catalyzing the ring closure reaction of 1-(o-carboxyphenylamino)-1-deoxyribulose-5-phosphate (CdRP) to indole-3-glycerol phosphate (IGP), accompanied by the release of carbon dioxide and water | Back alignment and domain information |
|---|
Probab=99.38 E-value=5.6e-11 Score=105.59 Aligned_cols=168 Identities=17% Similarity=0.234 Sum_probs=117.6
Q ss_pred cHHHHHHHHhCCCcee--ecCCCC--CCHHHHHHHHHHHHhhcCCcEEEEeecCCCCHHHHHHHHhcCCcEEEEccCCCc
Q 020013 24 GPELVAAVANAGGLGL--LRAPDW--EAPDYLRDLIRKTRSLTERPFGVGVVLAFPHNENIKAILSEKVAVLQVSWGEYS 99 (332)
Q Consensus 24 ~~~la~avs~aGglG~--i~~~~~--~~~e~~~~~i~~~r~~~~~p~gvnl~~~~~~~~~~~~~~~~~~~~I~~~~g~~~ 99 (332)
-.+++.+..++|.-++ +..... .++ +.++.+++..+.|+-+.-++. +..+++.+.+.|+|.|.+..-..+
T Consensus 33 ~~~~A~~~~~~GA~~l~v~~~~~~~~g~~----~~~~~i~~~v~iPi~~~~~i~--~~~~v~~~~~~Gad~v~l~~~~~~ 106 (217)
T cd00331 33 PVEIAKAYEKAGAAAISVLTEPKYFQGSL----EDLRAVREAVSLPVLRKDFII--DPYQIYEARAAGADAVLLIVAALD 106 (217)
T ss_pred HHHHHHHHHHcCCCEEEEEeCccccCCCH----HHHHHHHHhcCCCEEECCeec--CHHHHHHHHHcCCCEEEEeeccCC
Confidence 4577787877775333 211111 123 345666665677876543322 245789999999999987532233
Q ss_pred ----HHHHHHHHhCCCEEEEecCCHHHHHHHHHcCCCEEEEecCCCCcccCCCCchhhhHHHHHHHhCCCCCcEEeecCc
Q 020013 100 ----EELVLEAHSAGVKVVPQVGSFDEARKAVNAGVDAIIVQGREAGGHVIGQDGLISLLPMVVDLIGDRDIPIIAAGGI 175 (332)
Q Consensus 100 ----~~~i~~~~~~g~~v~~~v~s~~~a~~a~~~g~D~ivv~G~eaGGh~~~~~~~~~ll~~i~~~~~~~~iPviaaGGI 175 (332)
.++++..+..|+.++..+++.++++.+.+.|+|++.+.+.+ ++..+ ..+.++.++++.++ .++||++.|||
T Consensus 107 ~~~~~~~~~~~~~~g~~~~v~v~~~~e~~~~~~~g~~~i~~t~~~--~~~~~--~~~~~~~~l~~~~~-~~~pvia~gGI 181 (217)
T cd00331 107 DEQLKELYELARELGMEVLVEVHDEEELERALALGAKIIGINNRD--LKTFE--VDLNTTERLAPLIP-KDVILVSESGI 181 (217)
T ss_pred HHHHHHHHHHHHHcCCeEEEEECCHHHHHHHHHcCCCEEEEeCCC--ccccC--cCHHHHHHHHHhCC-CCCEEEEEcCC
Confidence 23445556689999999999999999999999999987542 23211 22466777776542 16899999999
Q ss_pred CCHHHHHHHHHcCcceeeeccccccCc
Q 020013 176 VDARGYVAALSLGAQGICLGTRFVASE 202 (332)
Q Consensus 176 ~~~~~v~~al~~GA~gV~~GT~fl~t~ 202 (332)
++++++.+++.+||+||++||+++...
T Consensus 182 ~s~edi~~~~~~Ga~gvivGsai~~~~ 208 (217)
T cd00331 182 STPEDVKRLAEAGADAVLIGESLMRAP 208 (217)
T ss_pred CCHHHHHHHHHcCCCEEEECHHHcCCC
Confidence 999999999999999999999998654
|
IGPS is active as a separate monomer in most organisms, but is also found fused to other enzymes as part of a bifunctional or multifunctional enzyme involved in tryptophan biosynthesis. |
| >PRK05718 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional | Back alignment and domain information |
|---|
Probab=99.37 E-value=2e-11 Score=107.44 Aligned_cols=176 Identities=22% Similarity=0.301 Sum_probs=128.5
Q ss_pred ccceecCCCCCCCCcHHHHHHHHhC---CCceeecCCCCCCHHHHHHHHHHHHh-hcCCcEEEEeecCCCCHHHHHHHHh
Q 020013 10 EYGIVQAPLGPDISGPELVAAVANA---GGLGLLRAPDWEAPDYLRDLIRKTRS-LTERPFGVGVVLAFPHNENIKAILS 85 (332)
Q Consensus 10 ~~Pii~apM~~g~s~~~la~avs~a---GglG~i~~~~~~~~e~~~~~i~~~r~-~~~~p~gvnl~~~~~~~~~~~~~~~ 85 (332)
+.|++ |.- ...+++.+..++++ ||+.++... +.+++. .+.++++++ ..+..+|++.+.+ .+.++.+.+
T Consensus 14 ~~~~i--aV~-r~~~~~~a~~i~~al~~~Gi~~iEit-l~~~~~-~~~I~~l~~~~p~~~IGAGTVl~---~~~a~~a~~ 85 (212)
T PRK05718 14 AGPVV--PVI-VINKLEDAVPLAKALVAGGLPVLEVT-LRTPAA-LEAIRLIAKEVPEALIGAGTVLN---PEQLAQAIE 85 (212)
T ss_pred HCCEE--EEE-EcCCHHHHHHHHHHHHHcCCCEEEEe-cCCccH-HHHHHHHHHHCCCCEEEEeeccC---HHHHHHHHH
Confidence 45666 553 34566666666654 789998774 667754 455666654 3456688887774 578899999
Q ss_pred cCCcEEEEccCCCcHHHHHHHHhCCCEEEEecCCHHHHHHHHHcCCCEEEEecCCCCcccCCCCchhhhHHHHHHHhCCC
Q 020013 86 EKVAVLQVSWGEYSEELVLEAHSAGVKVVPQVGSFDEARKAVNAGVDAIIVQGREAGGHVIGQDGLISLLPMVVDLIGDR 165 (332)
Q Consensus 86 ~~~~~I~~~~g~~~~~~i~~~~~~g~~v~~~v~s~~~a~~a~~~g~D~ivv~G~eaGGh~~~~~~~~~ll~~i~~~~~~~ 165 (332)
.|++++... +. .+++++.+++.++.+++.+.|+.|+..+.+.|+|.|.+...+.-| ....++.++..++
T Consensus 86 aGA~FivsP-~~-~~~vi~~a~~~~i~~iPG~~TptEi~~a~~~Ga~~vKlFPa~~~g-------g~~~lk~l~~p~p-- 154 (212)
T PRK05718 86 AGAQFIVSP-GL-TPPLLKAAQEGPIPLIPGVSTPSELMLGMELGLRTFKFFPAEASG-------GVKMLKALAGPFP-- 154 (212)
T ss_pred cCCCEEECC-CC-CHHHHHHHHHcCCCEeCCCCCHHHHHHHHHCCCCEEEEccchhcc-------CHHHHHHHhccCC--
Confidence 999999887 43 458999999999999999999999999999999999994432111 1345666665554
Q ss_pred CCcEEeecCcCCHHHHHHHHHcCcceeeeccccccCccCCC
Q 020013 166 DIPIIAAGGIVDARGYVAALSLGAQGICLGTRFVASEESYA 206 (332)
Q Consensus 166 ~iPviaaGGI~~~~~v~~al~~GA~gV~~GT~fl~t~Es~~ 206 (332)
++|++++||| +.+|+.+++++|+..+..||. |..++.-.
T Consensus 155 ~~~~~ptGGV-~~~ni~~~l~ag~v~~vggs~-L~~~~~~~ 193 (212)
T PRK05718 155 DVRFCPTGGI-SPANYRDYLALPNVLCIGGSW-MVPKDAIE 193 (212)
T ss_pred CCeEEEeCCC-CHHHHHHHHhCCCEEEEEChH-hCCcchhc
Confidence 6999999999 899999999999555555444 44444433
|
|
| >PRK11815 tRNA-dihydrouridine synthase A; Provisional | Back alignment and domain information |
|---|
Probab=99.37 E-value=1.9e-11 Score=115.31 Aligned_cols=189 Identities=17% Similarity=0.104 Sum_probs=125.9
Q ss_pred ccceecCCCCCCCCcHHHHHHHHhCCCceeecCCCCCCHHHHHH--HHHHHH-hhcCCcEEEEeecCCCC--HHHHHHHH
Q 020013 10 EYGIVQAPLGPDISGPELVAAVANAGGLGLLRAPDWEAPDYLRD--LIRKTR-SLTERPFGVGVVLAFPH--NENIKAIL 84 (332)
Q Consensus 10 ~~Pii~apM~~g~s~~~la~avs~aGglG~i~~~~~~~~e~~~~--~i~~~r-~~~~~p~gvnl~~~~~~--~~~~~~~~ 84 (332)
+.|++.|||. |+|+..+..-+.+.|+.++..++ +.+.+.+.. ....++ .-.+.|+.++++.+++. .+..+.+.
T Consensus 10 ~~~~~lAPM~-g~td~~fR~~~~~~g~~~~~~te-mv~~~~l~~~~~~~~l~~~~~e~p~~vQl~g~~p~~~~~aA~~~~ 87 (333)
T PRK11815 10 SRRFSVAPMM-DWTDRHCRYFHRLLSRHALLYTE-MVTTGAIIHGDRERLLAFDPEEHPVALQLGGSDPADLAEAAKLAE 87 (333)
T ss_pred CCCEEEeCCC-CCcCHHHHHHHHHhCCCCEEEEC-CEEeccccccCHHHHhccCCCCCcEEEEEeCCCHHHHHHHHHHHH
Confidence 5799999998 89999998888777865555443 222221111 011111 11357999999998763 12234455
Q ss_pred hcCCcEEEEccCCCcH-------------------HHHHHHHh-CCCEEEEec--C-----C----HHHHHHHHHcCCCE
Q 020013 85 SEKVAVLQVSWGEYSE-------------------ELVLEAHS-AGVKVVPQV--G-----S----FDEARKAVNAGVDA 133 (332)
Q Consensus 85 ~~~~~~I~~~~g~~~~-------------------~~i~~~~~-~g~~v~~~v--~-----s----~~~a~~a~~~g~D~ 133 (332)
+.++|.|.+++|+|.. ++++.+++ .+++|..++ + + .+-++.+.++|+|.
T Consensus 88 ~~g~d~IdlN~gCP~~~v~~~~~Gs~L~~~p~~~~eiv~avr~~v~~pVsvKiR~g~~~~~t~~~~~~~~~~l~~aG~d~ 167 (333)
T PRK11815 88 DWGYDEINLNVGCPSDRVQNGRFGACLMAEPELVADCVKAMKDAVSIPVTVKHRIGIDDQDSYEFLCDFVDTVAEAGCDT 167 (333)
T ss_pred hcCCCEEEEcCCCCHHHccCCCeeeHHhcCHHHHHHHHHHHHHHcCCceEEEEEeeeCCCcCHHHHHHHHHHHHHhCCCE
Confidence 6799999999887532 33444554 356665532 1 1 23345677899999
Q ss_pred EEEecCCC--CcccCC-----CCchhhhHHHHHHHhCCCCCcEEeecCcCCHHHHHHHHHcCcceeeeccccccCcc
Q 020013 134 IIVQGREA--GGHVIG-----QDGLISLLPMVVDLIGDRDIPIIAAGGIVDARGYVAALSLGAQGICLGTRFVASEE 203 (332)
Q Consensus 134 ivv~G~ea--GGh~~~-----~~~~~~ll~~i~~~~~~~~iPviaaGGI~~~~~v~~al~~GA~gV~~GT~fl~t~E 203 (332)
|.+.+... .|..+. +...+..+.++++.+. ++|||+.|||.+++++.++++ |||||++|++++..+.
T Consensus 168 i~vh~Rt~~~~g~~~~~~~~~~~~~~~~i~~v~~~~~--~iPVI~nGgI~s~eda~~~l~-~aDgVmIGRa~l~nP~ 241 (333)
T PRK11815 168 FIVHARKAWLKGLSPKENREIPPLDYDRVYRLKRDFP--HLTIEINGGIKTLEEAKEHLQ-HVDGVMIGRAAYHNPY 241 (333)
T ss_pred EEEcCCchhhcCCCccccccCCCcCHHHHHHHHHhCC--CCeEEEECCcCCHHHHHHHHh-cCCEEEEcHHHHhCCH
Confidence 99987542 232211 1234777888877642 699999999999999999997 7999999999998754
|
|
| >PRK00278 trpC indole-3-glycerol-phosphate synthase; Reviewed | Back alignment and domain information |
|---|
Probab=99.37 E-value=4.1e-11 Score=109.22 Aligned_cols=168 Identities=17% Similarity=0.218 Sum_probs=121.0
Q ss_pred HHHHHHHHhCCCceeec--CCCC--CCHHHHHHHHHHHHhhcCCcEEEEeecCCCCHHHHHHHHhcCCcEEEEccCCCc-
Q 020013 25 PELVAAVANAGGLGLLR--APDW--EAPDYLRDLIRKTRSLTERPFGVGVVLAFPHNENIKAILSEKVAVLQVSWGEYS- 99 (332)
Q Consensus 25 ~~la~avs~aGglG~i~--~~~~--~~~e~~~~~i~~~r~~~~~p~gvnl~~~~~~~~~~~~~~~~~~~~I~~~~g~~~- 99 (332)
.+++.+..++|.-++-. ...+ .+. +.+..+++.++.|+-..-|+.. ..+++.+.+.|+|+|.+.....+
T Consensus 73 ~~~A~~~~~~GA~aisvlte~~~f~g~~----~~l~~v~~~v~iPvl~kdfi~~--~~qi~~a~~~GAD~VlLi~~~l~~ 146 (260)
T PRK00278 73 VEIAKAYEAGGAACLSVLTDERFFQGSL----EYLRAARAAVSLPVLRKDFIID--PYQIYEARAAGADAILLIVAALDD 146 (260)
T ss_pred HHHHHHHHhCCCeEEEEecccccCCCCH----HHHHHHHHhcCCCEEeeeecCC--HHHHHHHHHcCCCEEEEEeccCCH
Confidence 57788777777544432 2111 133 3456666667888776544443 34788899999999998744422
Q ss_pred ---HHHHHHHHhCCCEEEEecCCHHHHHHHHHcCCCEEEEecCCCCcccCCCCchhhhHHHHHHHhCCCCCcEEeecCcC
Q 020013 100 ---EELVLEAHSAGVKVVPQVGSFDEARKAVNAGVDAIIVQGREAGGHVIGQDGLISLLPMVVDLIGDRDIPIIAAGGIV 176 (332)
Q Consensus 100 ---~~~i~~~~~~g~~v~~~v~s~~~a~~a~~~g~D~ivv~G~eaGGh~~~~~~~~~ll~~i~~~~~~~~iPviaaGGI~ 176 (332)
.++++.++..|..++..+++.++++.+.+.|+|+|.+.+.... .. ...+....++.+.++. +.|+|+.|||.
T Consensus 147 ~~l~~li~~a~~lGl~~lvevh~~~E~~~A~~~gadiIgin~rdl~--~~--~~d~~~~~~l~~~~p~-~~~vIaegGI~ 221 (260)
T PRK00278 147 EQLKELLDYAHSLGLDVLVEVHDEEELERALKLGAPLIGINNRNLK--TF--EVDLETTERLAPLIPS-DRLVVSESGIF 221 (260)
T ss_pred HHHHHHHHHHHHcCCeEEEEeCCHHHHHHHHHcCCCEEEECCCCcc--cc--cCCHHHHHHHHHhCCC-CCEEEEEeCCC
Confidence 2466677788999999999999999999999999988544321 11 1235556666665532 46999999999
Q ss_pred CHHHHHHHHHcCcceeeeccccccCcc
Q 020013 177 DARGYVAALSLGAQGICLGTRFVASEE 203 (332)
Q Consensus 177 ~~~~v~~al~~GA~gV~~GT~fl~t~E 203 (332)
+++++.+++.+|||+|.+||+++.++.
T Consensus 222 t~ed~~~~~~~Gad~vlVGsaI~~~~d 248 (260)
T PRK00278 222 TPEDLKRLAKAGADAVLVGESLMRADD 248 (260)
T ss_pred CHHHHHHHHHcCCCEEEECHHHcCCCC
Confidence 999999999999999999999997643
|
|
| >PLN02334 ribulose-phosphate 3-epimerase | Back alignment and domain information |
|---|
Probab=99.37 E-value=2.4e-11 Score=108.87 Aligned_cols=145 Identities=18% Similarity=0.281 Sum_probs=108.0
Q ss_pred HHHHHHHhhcCCcEEEEeecCCCCHHHHHHHHhcCCcEEEEccC---C-CcHHHHHHHHhCCCEEEEecC--CHHH-HHH
Q 020013 53 DLIRKTRSLTERPFGVGVVLAFPHNENIKAILSEKVAVLQVSWG---E-YSEELVLEAHSAGVKVVPQVG--SFDE-ARK 125 (332)
Q Consensus 53 ~~i~~~r~~~~~p~gvnl~~~~~~~~~~~~~~~~~~~~I~~~~g---~-~~~~~i~~~~~~g~~v~~~v~--s~~~-a~~ 125 (332)
+.++.+++.++.++.+.+++.++ .++++.+.+.+++.|++|.+ . .+...++.+++.|.++...++ ++.+ ++.
T Consensus 55 ~~~~~l~~~~~~~~~vhlmv~~p-~d~~~~~~~~gad~v~vH~~q~~~d~~~~~~~~i~~~g~~iGls~~~~t~~~~~~~ 133 (229)
T PLN02334 55 PVVKALRKHTDAPLDCHLMVTNP-EDYVPDFAKAGASIFTFHIEQASTIHLHRLIQQIKSAGMKAGVVLNPGTPVEAVEP 133 (229)
T ss_pred HHHHHHHhcCCCcEEEEeccCCH-HHHHHHHHHcCCCEEEEeeccccchhHHHHHHHHHHCCCeEEEEECCCCCHHHHHH
Confidence 56778888888889999999876 57889999999999988877 2 244677888888998887775 4444 444
Q ss_pred HHHcC-CCEEEEecCCCC--cccCCCCchhhhHHHHHHHhCCCCCcEEeecCcCCHHHHHHHHHcCcceeeeccccccCc
Q 020013 126 AVNAG-VDAIIVQGREAG--GHVIGQDGLISLLPMVVDLIGDRDIPIIAAGGIVDARGYVAALSLGAQGICLGTRFVASE 202 (332)
Q Consensus 126 a~~~g-~D~ivv~G~eaG--Gh~~~~~~~~~ll~~i~~~~~~~~iPviaaGGI~~~~~v~~al~~GA~gV~~GT~fl~t~ 202 (332)
..+.| +|+|.+-....| |.. .....+..+.++++... ++||++.||| +.+++.+++++|||++++||+++.++
T Consensus 134 ~~~~~~~Dyi~~~~v~pg~~~~~-~~~~~~~~i~~~~~~~~--~~~I~a~GGI-~~e~i~~l~~aGad~vvvgsai~~~~ 209 (229)
T PLN02334 134 VVEKGLVDMVLVMSVEPGFGGQS-FIPSMMDKVRALRKKYP--ELDIEVDGGV-GPSTIDKAAEAGANVIVAGSAVFGAP 209 (229)
T ss_pred HHhccCCCEEEEEEEecCCCccc-cCHHHHHHHHHHHHhCC--CCcEEEeCCC-CHHHHHHHHHcCCCEEEEChHHhCCC
Confidence 44543 999977433322 211 12234666777766543 5899999999 89999999999999999999987643
|
|
| >TIGR02708 L_lactate_ox L-lactate oxidase | Back alignment and domain information |
|---|
Probab=99.36 E-value=7.4e-11 Score=111.55 Aligned_cols=202 Identities=15% Similarity=0.214 Sum_probs=127.3
Q ss_pred hhcC--CccceecCCCCCC-C--C--cHHHHHHHHhCCCceeecCCCCCCHHHHHHHHHHHHhhcCCcEEEEeecCCCC-
Q 020013 5 GMLG--FEYGIVQAPLGPD-I--S--GPELVAAVANAGGLGLLRAPDWEAPDYLRDLIRKTRSLTERPFGVGVVLAFPH- 76 (332)
Q Consensus 5 ~~l~--~~~Pii~apM~~g-~--s--~~~la~avs~aGglG~i~~~~~~~~e~~~~~i~~~r~~~~~p~gvnl~~~~~~- 76 (332)
++|| +..||+-+||+.. + . ...++.+..++|..-++......+.|++. +.. .+.|+-..+.+....
T Consensus 73 ~llG~~~~~Pv~iaP~g~~~l~~p~gE~~~ArAA~~~g~~~~lSt~ss~slEev~----~~~--~~~~~wfQlY~~~dr~ 146 (367)
T TIGR02708 73 EFLGHKLKSPFIMAPVAAHKLANEQGEVATARGVSEFGSIYTTSSYSTADLPEIS----EAL--NGTPHWFQFYMSKDDG 146 (367)
T ss_pred eeCCcccccccccCcHHHhhccCCcHHHHHHHHHHHcCCCeeecccccCCHHHHH----hhc--CCCceEEEEeccCCHH
Confidence 4666 5689999999631 1 1 24566777777755555443223444432 111 123444444333221
Q ss_pred --HHHHHHHHhcCCcEEEEccCC---------------------------------------------CcHHHHHHHHh-
Q 020013 77 --NENIKAILSEKVAVLQVSWGE---------------------------------------------YSEELVLEAHS- 108 (332)
Q Consensus 77 --~~~~~~~~~~~~~~I~~~~g~---------------------------------------------~~~~~i~~~~~- 108 (332)
.+.++.+.++|.+++.+.... ..-+.++.+++
T Consensus 147 ~~~~li~RA~~aG~~alvlTvD~p~~g~R~~d~r~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~i~~l~~~ 226 (367)
T TIGR02708 147 INRDIMDRVKADGAKAIVLTADATVGGNREVDVRNGFVFPVGMPIVQEYLPTGAGKSMDNVYKSAKQKLSPRDIEEIAGY 226 (367)
T ss_pred HHHHHHHHHHHcCCCEEEEecCCCCCCcchhhhhcCCCCCCccchhhhhcccCCccchhhhccccCCCCCHHHHHHHHHh
Confidence 334555556666655442110 00123455554
Q ss_pred CCCEEE-EecCCHHHHHHHHHcCCCEEEEecCCCCccc-CCCCchhhhHHHHHHHhCCCCCcEEeecCcCCHHHHHHHHH
Q 020013 109 AGVKVV-PQVGSFDEARKAVNAGVDAIIVQGREAGGHV-IGQDGLISLLPMVVDLIGDRDIPIIAAGGIVDARGYVAALS 186 (332)
Q Consensus 109 ~g~~v~-~~v~s~~~a~~a~~~g~D~ivv~G~eaGGh~-~~~~~~~~ll~~i~~~~~~~~iPviaaGGI~~~~~v~~al~ 186 (332)
.+++++ ..+.+.++++.+.+.|+|+|++.+. ||.. ++....+..|+++++++.. ++|||+.|||.++.|+.++|+
T Consensus 227 ~~~PvivKGv~~~eda~~a~~~Gvd~I~VS~H--GGrq~~~~~a~~~~L~ei~~av~~-~i~vi~dGGIr~g~Dv~KaLa 303 (367)
T TIGR02708 227 SGLPVYVKGPQCPEDADRALKAGASGIWVTNH--GGRQLDGGPAAFDSLQEVAEAVDK-RVPIVFDSGVRRGQHVFKALA 303 (367)
T ss_pred cCCCEEEeCCCCHHHHHHHHHcCcCEEEECCc--CccCCCCCCcHHHHHHHHHHHhCC-CCcEEeeCCcCCHHHHHHHHH
Confidence 355655 5588999999999999999999766 3322 2223568889999888743 699999999999999999999
Q ss_pred cCcceeeeccccccCccCCCCHHHHHHHh
Q 020013 187 LGAQGICLGTRFVASEESYAHPEYKRKLV 215 (332)
Q Consensus 187 ~GA~gV~~GT~fl~t~Es~~~~~~k~~~~ 215 (332)
+||++|.+|..|+..--....+..++.+.
T Consensus 304 lGAd~V~igR~~l~~la~~G~~gv~~~l~ 332 (367)
T TIGR02708 304 SGADLVALGRPVIYGLALGGSQGARQVFE 332 (367)
T ss_pred cCCCEEEEcHHHHHHHHhcCHHHHHHHHH
Confidence 99999999999998744444444444443
|
Members of this protein oxidize L-lactate to pyruvate, reducing molecular oxygen to hydrogen peroxide. The enzyme is known in Aerococcus viridans, Streptococcus iniae, and some strains of Streptococcus pyogenes where it appears to contribute to virulence. |
| >PRK06512 thiamine-phosphate pyrophosphorylase; Provisional | Back alignment and domain information |
|---|
Probab=99.36 E-value=5.5e-11 Score=105.66 Aligned_cols=168 Identities=17% Similarity=0.151 Sum_probs=111.9
Q ss_pred HHHHHHHhCCC-ceeecCCC-CCCHHHHHHHHHHHHhhcCCcEEEEeecCCCCHHHHHHHHhcCCcEEEEccCCCcHHHH
Q 020013 26 ELVAAVANAGG-LGLLRAPD-WEAPDYLRDLIRKTRSLTERPFGVGVVLAFPHNENIKAILSEKVAVLQVSWGEYSEELV 103 (332)
Q Consensus 26 ~la~avs~aGg-lG~i~~~~-~~~~e~~~~~i~~~r~~~~~p~gvnl~~~~~~~~~~~~~~~~~~~~I~~~~g~~~~~~i 103 (332)
+.+.++.. || +.++.... ..+.+++.++.+++++++. .+++.+++| +.++.+.+.++|.|+++..+.+....
T Consensus 30 ~~l~~al~-~G~v~~vQlR~K~l~~~~~~~~a~~l~~l~~-~~gv~liIN----d~~dlA~~~~adGVHLg~~d~~~~~~ 103 (221)
T PRK06512 30 KLLRAALQ-GGDVASVILPQYGLDEATFQKQAEKLVPVIQ-EAGAAALIA----GDSRIAGRVKADGLHIEGNLAALAEA 103 (221)
T ss_pred HHHHHHHc-CCCccEEEEeCCCCCHHHHHHHHHHHHHHHH-HhCCEEEEe----CHHHHHHHhCCCEEEECccccCHHHH
Confidence 34444433 55 56665421 1355667777777777653 356677764 45888999999999998544333333
Q ss_pred HHHHhCCCEEEEe-cCCHHHHHHHHHcCCCEEEEecCCCCcccCCCCchhhhHHHHHHHhCCCCCcEEeecCcCCHHHHH
Q 020013 104 LEAHSAGVKVVPQ-VGSFDEARKAVNAGVDAIIVQGREAGGHVIGQDGLISLLPMVVDLIGDRDIPIIAAGGIVDARGYV 182 (332)
Q Consensus 104 ~~~~~~g~~v~~~-v~s~~~a~~a~~~g~D~ivv~G~eaGGh~~~~~~~~~ll~~i~~~~~~~~iPviaaGGI~~~~~v~ 182 (332)
++....+..+... +++.+++.++.+.|+|||.+-..............+.++.++.+.. ++||++.||| +.+|+.
T Consensus 104 r~~~~~~~iiG~s~~~s~~~a~~A~~~gaDYv~~Gpv~t~tK~~~~p~gl~~l~~~~~~~---~iPvvAIGGI-~~~n~~ 179 (221)
T PRK06512 104 IEKHAPKMIVGFGNLRDRHGAMEIGELRPDYLFFGKLGADNKPEAHPRNLSLAEWWAEMI---EIPCIVQAGS-DLASAV 179 (221)
T ss_pred HHhcCCCCEEEecCCCCHHHHHHhhhcCCCEEEECCCCCCCCCCCCCCChHHHHHHHHhC---CCCEEEEeCC-CHHHHH
Confidence 3332234444444 5688889889999999999833321111111112356676666665 7999999999 899999
Q ss_pred HHHHcCcceeeeccccccCcc
Q 020013 183 AALSLGAQGICLGTRFVASEE 203 (332)
Q Consensus 183 ~al~~GA~gV~~GT~fl~t~E 203 (332)
+++..||+||.+-|.++.++.
T Consensus 180 ~~~~~GA~giAvisai~~~~d 200 (221)
T PRK06512 180 EVAETGAEFVALERAVFDAHD 200 (221)
T ss_pred HHHHhCCCEEEEhHHhhCCCC
Confidence 999999999999999996543
|
|
| >cd04739 DHOD_like Dihydroorotate dehydrogenase (DHOD) like proteins | Back alignment and domain information |
|---|
Probab=99.35 E-value=5.8e-11 Score=111.72 Aligned_cols=149 Identities=15% Similarity=0.181 Sum_probs=101.8
Q ss_pred HHHHHHHHHHhhcCCcEEEEeecCCCC--HHHHHHHHhcCCcEEEEccCCCc--------------HHHHHHHHhC-CCE
Q 020013 50 YLRDLIRKTRSLTERPFGVGVVLAFPH--NENIKAILSEKVAVLQVSWGEYS--------------EELVLEAHSA-GVK 112 (332)
Q Consensus 50 ~~~~~i~~~r~~~~~p~gvnl~~~~~~--~~~~~~~~~~~~~~I~~~~g~~~--------------~~~i~~~~~~-g~~ 112 (332)
.+.+.+.+.++..+.|+.+|+....+. .+..+.+.+.++|+|.++.++++ .++++.+++. .++
T Consensus 86 ~~~~~i~~~~~~~~~pvi~si~g~~~~~~~~~a~~~~~~gad~iElN~s~~~~~~~~~g~~~~~~~~eiv~~v~~~~~iP 165 (325)
T cd04739 86 EYLELIRRAKRAVSIPVIASLNGVSAGGWVDYARQIEEAGADALELNIYALPTDPDISGAEVEQRYLDILRAVKSAVTIP 165 (325)
T ss_pred HHHHHHHHHHhccCCeEEEEeCCCCHHHHHHHHHHHHhcCCCEEEEeCCCCCCCCCcccchHHHHHHHHHHHHHhccCCC
Confidence 344445554444478999998765442 24455556678999999876421 1345555543 688
Q ss_pred EEEecC-C----HHHHHHHHHcCCCEEEEecCCCCccc-------------CCC---CchhhhHHHHHHHhCCCCCcEEe
Q 020013 113 VVPQVG-S----FDEARKAVNAGVDAIIVQGREAGGHV-------------IGQ---DGLISLLPMVVDLIGDRDIPIIA 171 (332)
Q Consensus 113 v~~~v~-s----~~~a~~a~~~g~D~ivv~G~eaGGh~-------------~~~---~~~~~ll~~i~~~~~~~~iPvia 171 (332)
|+.+.+ + .+.++.+.+.|+|+|++.++-.+... .++ ...+..+.++++.+ ++|||+
T Consensus 166 v~vKl~p~~~~~~~~a~~l~~~Gadgi~~~nt~~~~~id~~~~~~~~~~glSG~~~~~~al~~v~~v~~~~---~ipIig 242 (325)
T cd04739 166 VAVKLSPFFSALAHMAKQLDAAGADGLVLFNRFYQPDIDLETLEVVPNLLLSSPAEIRLPLRWIAILSGRV---KASLAA 242 (325)
T ss_pred EEEEcCCCccCHHHHHHHHHHcCCCeEEEEcCcCCCCccccccceecCCCcCCccchhHHHHHHHHHHccc---CCCEEE
Confidence 887765 2 34566788999999999875311111 011 11244556666555 799999
Q ss_pred ecCcCCHHHHHHHHHcCcceeeeccccccC
Q 020013 172 AGGIVDARGYVAALSLGAQGICLGTRFVAS 201 (332)
Q Consensus 172 aGGI~~~~~v~~al~~GA~gV~~GT~fl~t 201 (332)
.|||.|++|+.+++.+||++|++||+++..
T Consensus 243 ~GGI~s~~Da~e~l~aGA~~Vqv~ta~~~~ 272 (325)
T cd04739 243 SGGVHDAEDVVKYLLAGADVVMTTSALLRH 272 (325)
T ss_pred ECCCCCHHHHHHHHHcCCCeeEEehhhhhc
Confidence 999999999999999999999999999974
|
DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively. This subgroup has the conserved FMN binding site, but lacks some catalytic residues and may therefore be inactive. |
| >cd04726 KGPDC_HPS 3-Keto-L-gulonate 6-phosphate decarboxylase (KGPDC) and D-arabino-3-hexulose-6-phosphate synthase (HPS) | Back alignment and domain information |
|---|
Probab=99.34 E-value=7.8e-11 Score=103.31 Aligned_cols=142 Identities=18% Similarity=0.186 Sum_probs=106.1
Q ss_pred HHHHHHHhh-cCCcEEEEeecCCCCHHHHHHHHhcCCcEEEEccCCC---cHHHHHHHHhCCCEEEE---ecCCHHHHHH
Q 020013 53 DLIRKTRSL-TERPFGVGVVLAFPHNENIKAILSEKVAVLQVSWGEY---SEELVLEAHSAGVKVVP---QVGSFDEARK 125 (332)
Q Consensus 53 ~~i~~~r~~-~~~p~gvnl~~~~~~~~~~~~~~~~~~~~I~~~~g~~---~~~~i~~~~~~g~~v~~---~v~s~~~a~~ 125 (332)
+.++.+++. ++.|+.+.+.+.++....++.+.+.|++++.+|.-.. ..++++.+++.|++++. .+.|+++...
T Consensus 42 ~~i~~i~~~~~~~~i~~~~~v~~~~~~~~~~~~~aGad~i~~h~~~~~~~~~~~i~~~~~~g~~~~v~~~~~~t~~e~~~ 121 (202)
T cd04726 42 EAVRALREAFPDKIIVADLKTADAGALEAEMAFKAGADIVTVLGAAPLSTIKKAVKAAKKYGKEVQVDLIGVEDPEKRAK 121 (202)
T ss_pred HHHHHHHHHCCCCEEEEEEEeccccHHHHHHHHhcCCCEEEEEeeCCHHHHHHHHHHHHHcCCeEEEEEeCCCCHHHHHH
Confidence 446666654 5788888888776655557888999999999985322 23577888889999874 6668888888
Q ss_pred HHHcCCCEEEEe-cCCCCcccCCCCchhhhHHHHHHHhCCCCCcEEeecCcCCHHHHHHHHHcCcceeeecccccc
Q 020013 126 AVNAGVDAIIVQ-GREAGGHVIGQDGLISLLPMVVDLIGDRDIPIIAAGGIVDARGYVAALSLGAQGICLGTRFVA 200 (332)
Q Consensus 126 a~~~g~D~ivv~-G~eaGGh~~~~~~~~~ll~~i~~~~~~~~iPviaaGGI~~~~~v~~al~~GA~gV~~GT~fl~ 200 (332)
+...|+|++.+. ++. ++.. +.......++++++.. ++|+++.||| +++++.+++..|||++.+||.++.
T Consensus 122 ~~~~~~d~v~~~~~~~-~~~~-~~~~~~~~i~~~~~~~---~~~i~~~GGI-~~~~i~~~~~~Gad~vvvGsai~~ 191 (202)
T cd04726 122 LLKLGVDIVILHRGID-AQAA-GGWWPEDDLKKVKKLL---GVKVAVAGGI-TPDTLPEFKKAGADIVIVGRAITG 191 (202)
T ss_pred HHHCCCCEEEEcCccc-cccc-CCCCCHHHHHHHHhhc---CCCEEEECCc-CHHHHHHHHhcCCCEEEEeehhcC
Confidence 888999999883 222 1111 1223355666666543 7999999999 699999999999999999999864
|
KGPDC catalyzes the formation of L-xylulose 5-phosphate and carbon dioxide from 3-keto-L-gulonate 6-phosphate as part of the anaerobic pathway for L-ascorbate utilization in some eubacteria. HPS catalyzes the formation of D-arabino-3-hexulose-6-phosphate from D-ribulose 5-phosphate and formaldehyde in microorganisms that can use formaldehyde as a carbon source. Both catalyze reactions that involve the Mg2+-assisted formation and stabilization of 1,2-enediolate reaction intermediates. |
| >cd02801 DUS_like_FMN Dihydrouridine synthase-like (DUS-like) FMN-binding domain | Back alignment and domain information |
|---|
Probab=99.33 E-value=3.9e-11 Score=107.42 Aligned_cols=185 Identities=21% Similarity=0.273 Sum_probs=121.1
Q ss_pred ceecCCCCCCCCcHHHHHHHHhCCCceeecCCCCCCHHHHHHH----HHHH-HhhcCCcEEEEeecCCCC--HHHHHHHH
Q 020013 12 GIVQAPLGPDISGPELVAAVANAGGLGLLRAPDWEAPDYLRDL----IRKT-RSLTERPFGVGVVLAFPH--NENIKAIL 84 (332)
Q Consensus 12 Pii~apM~~g~s~~~la~avs~aGglG~i~~~~~~~~e~~~~~----i~~~-r~~~~~p~gvnl~~~~~~--~~~~~~~~ 84 (332)
|+++|||. ++++..+..-+.+.| ..+..++ +...+.+... .... +...+.|+.+++....+. .+..+.+.
T Consensus 1 ~~~~aPm~-~~~~~~fR~l~~~~~-~~~~~t~-~~~~~~~~~~~~~~~~~~~~~~~~~p~~~qi~g~~~~~~~~aa~~~~ 77 (231)
T cd02801 1 KLILAPMV-GVTDLPFRLLCRRYG-ADLVYTE-MISAKALLRGNRKRLRLLTRNPEERPLIVQLGGSDPETLAEAAKIVE 77 (231)
T ss_pred CeEeCCCC-CCcCHHHHHHHHHHC-CCEEEec-CEEEhhhhhcCHHHHHhhccCccCCCEEEEEcCCCHHHHHHHHHHHH
Confidence 57899997 799999999888887 4544443 2221111111 1111 112357889988876542 22344556
Q ss_pred hcCCcEEEEccCCCc----------------H---HHHHHHHhC-CCEEEEecC--------CHHHHHHHHHcCCCEEEE
Q 020013 85 SEKVAVLQVSWGEYS----------------E---ELVLEAHSA-GVKVVPQVG--------SFDEARKAVNAGVDAIIV 136 (332)
Q Consensus 85 ~~~~~~I~~~~g~~~----------------~---~~i~~~~~~-g~~v~~~v~--------s~~~a~~a~~~g~D~ivv 136 (332)
+.|.|.|.++.|+|. . ++++.+++. ++++...+. ..+.++.+.+.|+|+|.+
T Consensus 78 ~aG~d~ieln~g~p~~~~~~~~~G~~l~~~~~~~~eii~~v~~~~~~~v~vk~r~~~~~~~~~~~~~~~l~~~Gvd~i~v 157 (231)
T cd02801 78 ELGADGIDLNMGCPSPKVTKGGAGAALLKDPELVAEIVRAVREAVPIPVTVKIRLGWDDEEETLELAKALEDAGASALTV 157 (231)
T ss_pred hcCCCEEEEeCCCCHHHHhCCCeeehhcCCHHHHHHHHHHHHHhcCCCEEEEEeeccCCchHHHHHHHHHHHhCCCEEEE
Confidence 679999999977631 1 344555543 445554432 122344566789999999
Q ss_pred ecCCCCcccCCCCchhhhHHHHHHHhCCCCCcEEeecCcCCHHHHHHHHHc-CcceeeeccccccCcc
Q 020013 137 QGREAGGHVIGQDGLISLLPMVVDLIGDRDIPIIAAGGIVDARGYVAALSL-GAQGICLGTRFVASEE 203 (332)
Q Consensus 137 ~G~eaGGh~~~~~~~~~ll~~i~~~~~~~~iPviaaGGI~~~~~v~~al~~-GA~gV~~GT~fl~t~E 203 (332)
.+....+.. .....+..+.++++.. ++||++.|||.+.+++.+++.. |||+|++|+.++..++
T Consensus 158 ~~~~~~~~~-~~~~~~~~~~~i~~~~---~ipvi~~Ggi~~~~d~~~~l~~~gad~V~igr~~l~~P~ 221 (231)
T cd02801 158 HGRTREQRY-SGPADWDYIAEIKEAV---SIPVIANGDIFSLEDALRCLEQTGVDGVMIGRGALGNPW 221 (231)
T ss_pred CCCCHHHcC-CCCCCHHHHHHHHhCC---CCeEEEeCCCCCHHHHHHHHHhcCCCEEEEcHHhHhCCH
Confidence 765322111 1123477777887765 7999999999999999999998 8999999999998754
|
Members of this family catalyze the reduction of the 5,6-double bond of a uridine residue on tRNA. Dihydrouridine modification of tRNA is widely observed in prokaryotes and eukaryotes, and also in some archaea. Most dihydrouridines are found in the D loop of t-RNAs. The role of dihydrouridine in tRNA is currently unknown, but may increase conformational flexibility of the tRNA. It is likely that different family members have different substrate specificities, which may overlap. 1VHN, a putative flavin oxidoreductase, has high sequence similarity to DUS. The enzymatic mechanism of 1VHN is not known at the present. |
| >TIGR00693 thiE thiamine-phosphate pyrophosphorylase | Back alignment and domain information |
|---|
Probab=99.32 E-value=1.1e-10 Score=101.98 Aligned_cols=167 Identities=18% Similarity=0.205 Sum_probs=115.4
Q ss_pred HHHHHHHhCCCceeecCCC-CCCHHHHHHHHHHHHhhcCCcEEEEeecCCCCHHHHHHHHhcCCcEEEEccCCCcHHHHH
Q 020013 26 ELVAAVANAGGLGLLRAPD-WEAPDYLRDLIRKTRSLTERPFGVGVVLAFPHNENIKAILSEKVAVLQVSWGEYSEELVL 104 (332)
Q Consensus 26 ~la~avs~aGglG~i~~~~-~~~~e~~~~~i~~~r~~~~~p~gvnl~~~~~~~~~~~~~~~~~~~~I~~~~g~~~~~~i~ 104 (332)
+.+....+.| +..+.... ..+...+.+.+.+++...+ ++++.++++ +.++.+.+.+++.|++..+..+....+
T Consensus 17 ~~~~~~~~~g-~~~v~lR~~~~~~~~~~~~~~~l~~~~~-~~~~~l~i~----~~~~la~~~g~~GvHl~~~~~~~~~~r 90 (196)
T TIGR00693 17 NRVEAALKGG-VTLVQLRDKGSNTRERLALAEKLQELCR-RYGVPFIVN----DRVDLALALGADGVHLGQDDLPASEAR 90 (196)
T ss_pred HHHHHHHhcC-CCEEEEecCCCCHHHHHHHHHHHHHHHH-HhCCeEEEE----CHHHHHHHcCCCEEecCcccCCHHHHH
Confidence 3344444555 56654311 1244555666666665532 255666663 357788899999999976554555555
Q ss_pred HHHhCCCEEEEecCCHHHHHHHHHcCCCEEEEecC-CCCcccCC-CCchhhhHHHHHHHhCCCCCcEEeecCcCCHHHHH
Q 020013 105 EAHSAGVKVVPQVGSFDEARKAVNAGVDAIIVQGR-EAGGHVIG-QDGLISLLPMVVDLIGDRDIPIIAAGGIVDARGYV 182 (332)
Q Consensus 105 ~~~~~g~~v~~~v~s~~~a~~a~~~g~D~ivv~G~-eaGGh~~~-~~~~~~ll~~i~~~~~~~~iPviaaGGI~~~~~v~ 182 (332)
.....+..+...+++.+++..+.+.|+|++.+... ..+.+... +...+..+.++.+... ++||++.||| +.+++.
T Consensus 91 ~~~~~~~~ig~s~h~~~e~~~a~~~g~dyi~~~~v~~t~~k~~~~~~~g~~~l~~~~~~~~--~~pv~a~GGI-~~~~~~ 167 (196)
T TIGR00693 91 ALLGPDKIIGVSTHNLEELAEAEAEGADYIGFGPIFPTPTKKDPAPPAGVELLREIAATSI--DIPIVAIGGI-TLENAA 167 (196)
T ss_pred HhcCCCCEEEEeCCCHHHHHHHhHcCCCEEEECCccCCCCCCCCCCCCCHHHHHHHHHhcC--CCCEEEECCc-CHHHHH
Confidence 55556788889999999999999999999987432 22222211 1123667777766542 5999999999 899999
Q ss_pred HHHHcCcceeeeccccccC
Q 020013 183 AALSLGAQGICLGTRFVAS 201 (332)
Q Consensus 183 ~al~~GA~gV~~GT~fl~t 201 (332)
+++.+|++||.+|+.++.+
T Consensus 168 ~~~~~G~~gva~~~~i~~~ 186 (196)
T TIGR00693 168 EVLAAGADGVAVVSAIMQA 186 (196)
T ss_pred HHHHcCCCEEEEhHHhhCC
Confidence 9999999999999999965
|
This model includes ThiE from Bacillus subtilis but excludes its paralog, the regulatory protein TenI, and neighbors of TenI. |
| >PRK13958 N-(5'-phosphoribosyl)anthranilate isomerase; Provisional | Back alignment and domain information |
|---|
Probab=99.32 E-value=1.3e-10 Score=102.23 Aligned_cols=165 Identities=18% Similarity=0.255 Sum_probs=117.0
Q ss_pred CCCcHHHHHHHHhCC--Cceeec---CCCCCCHHHHHHHHHHHHhhcCCcEEEEeecCCCCHHHHHHHHhcCCcEEEEcc
Q 020013 21 DISGPELVAAVANAG--GLGLLR---APDWEAPDYLRDLIRKTRSLTERPFGVGVVLAFPHNENIKAILSEKVAVLQVSW 95 (332)
Q Consensus 21 g~s~~~la~avs~aG--glG~i~---~~~~~~~e~~~~~i~~~r~~~~~p~gvnl~~~~~~~~~~~~~~~~~~~~I~~~~ 95 (332)
|+++++.+..++++| .+||+. ++++.+++..+++.+.+.. ..-.|+++++.+.++..+.+...++|+|++|
T Consensus 7 Git~~eda~~~~~~GaD~iGfIf~~~SpR~V~~~~a~~i~~~~~~---~~~~VgVf~~~~~~~i~~~~~~~~~d~vQLH- 82 (207)
T PRK13958 7 GFTTIKDVTAASQLPIDAIGFIHYEKSKRHQTITQIKKLASAVPN---HIDKVCVVVNPDLTTIEHILSNTSINTIQLH- 82 (207)
T ss_pred CCCcHHHHHHHHHcCCCEEEEecCCCCcccCCHHHHHHHHHhCCC---CCCEEEEEeCCCHHHHHHHHHhCCCCEEEEC-
Confidence 689999999999998 599995 3456788887777666542 1224778888765666677777899999999
Q ss_pred CCCcHHHHHHHHhC--CCEEEEecCC-HHHHH--HHHHcCCCEEEEecC--CCCcccCCCCchhhhHHHHHHHhCCCCCc
Q 020013 96 GEYSEELVLEAHSA--GVKVVPQVGS-FDEAR--KAVNAGVDAIIVQGR--EAGGHVIGQDGLISLLPMVVDLIGDRDIP 168 (332)
Q Consensus 96 g~~~~~~i~~~~~~--g~~v~~~v~s-~~~a~--~a~~~g~D~ivv~G~--eaGGh~~~~~~~~~ll~~i~~~~~~~~iP 168 (332)
|..++++++.++.. +++++..+.- ..... ..+...+|+++++.. ..||. |....|.+++.+ . ..|
T Consensus 83 G~e~~~~~~~l~~~~~~~~iika~~~~~~~~~~~~~~~~~~d~~LlDs~~~~~GGt--G~~~dw~~~~~~---~---~~p 154 (207)
T PRK13958 83 GTESIDFIQEIKKKYSSIKIIKALPADENIIQNINKYKGFVDLFIIDTPSVSYGGT--GQTYDWTILKHI---K---DIP 154 (207)
T ss_pred CCCCHHHHHHHhhcCCCceEEEEecccHHHHHHHHHHHhhCCEEEEcCCCCCCCcC--CcEeChHHhhhc---c---CCC
Confidence 66678888888864 4677754432 22211 112335899999753 22332 344568777654 2 469
Q ss_pred EEeecCcCCHHHHHHHHH--cCcceeeecccc
Q 020013 169 IIAAGGIVDARGYVAALS--LGAQGICLGTRF 198 (332)
Q Consensus 169 viaaGGI~~~~~v~~al~--~GA~gV~~GT~f 198 (332)
++.|||| +++|+.+++. .+..||-+-|.+
T Consensus 155 ~iLAGGL-~peNV~~a~~~~~~p~gVDvsSGV 185 (207)
T PRK13958 155 YLIAGGI-NSENIQTVEQLKLSHQGYDIASGI 185 (207)
T ss_pred EEEECCC-CHHHHHHHHhcCCCCCEEEccccc
Confidence 9999999 8999999875 588999998776
|
|
| >PRK05286 dihydroorotate dehydrogenase 2; Reviewed | Back alignment and domain information |
|---|
Probab=99.32 E-value=6.3e-11 Score=112.34 Aligned_cols=188 Identities=19% Similarity=0.259 Sum_probs=121.4
Q ss_pred CccceecCCCCCCCCcHHHHHHHHhCCCceeecCCCC--------C------C-------------HHHHHHHHHHHHhh
Q 020013 9 FEYGIVQAPLGPDISGPELVAAVANAGGLGLLRAPDW--------E------A-------------PDYLRDLIRKTRSL 61 (332)
Q Consensus 9 ~~~Pii~apM~~g~s~~~la~avs~aGglG~i~~~~~--------~------~-------------~e~~~~~i~~~r~~ 61 (332)
++.||+.+.= ...+.+......++| +|++..++. . . -..++..++++++.
T Consensus 58 l~nPi~~AsG--~~~~~~~~~~~~~~G-~Gavv~ktvt~~p~~gn~~pr~~~~~~~~~~~N~~gl~n~g~~~~~~~l~~~ 134 (344)
T PRK05286 58 FPNPVGLAAG--FDKNGEAIDALGALG-FGFVEVGTVTPRPQPGNPKPRLFRLPEDEALINRMGFNNDGADALAERLKKA 134 (344)
T ss_pred CCCCCEECCC--CCCChHHHHHHHHcC-CCEEEeCCcCCCCCCCCCCCCEEecccccccccCCCCCCHhHHHHHHHHHHh
Confidence 6679987652 235667777776654 454432110 0 0 01133444444433
Q ss_pred -cCCcEEEEeecCC------CCHHHHHHHHhc--CCcEEEEccCCCc-------------HHHHHHHHhC-C-----CEE
Q 020013 62 -TERPFGVGVVLAF------PHNENIKAILSE--KVAVLQVSWGEYS-------------EELVLEAHSA-G-----VKV 113 (332)
Q Consensus 62 -~~~p~gvnl~~~~------~~~~~~~~~~~~--~~~~I~~~~g~~~-------------~~~i~~~~~~-g-----~~v 113 (332)
.+.|+++|+..+. ..+++.+.+.+. .+|++.+++++|. .++++.+++. + ++|
T Consensus 135 ~~~~pvivsI~~~~~~~~~~~~~d~~~~~~~~~~~ad~lelN~scP~~~g~~~~~~~~~~~eiv~aVr~~~~~~~~~~PV 214 (344)
T PRK05286 135 YRGIPLGINIGKNKDTPLEDAVDDYLICLEKLYPYADYFTVNISSPNTPGLRDLQYGEALDELLAALKEAQAELHGYVPL 214 (344)
T ss_pred cCCCcEEEEEecCCCCCcccCHHHHHHHHHHHHhhCCEEEEEccCCCCCCcccccCHHHHHHHHHHHHHHHhccccCCce
Confidence 4689999997652 124455444443 4999999876642 2455566552 4 888
Q ss_pred EEecC---C----HHHHHHHHHcCCCEEEEecCC--------------CCcccCCCC---chhhhHHHHHHHhCCCCCcE
Q 020013 114 VPQVG---S----FDEARKAVNAGVDAIIVQGRE--------------AGGHVIGQD---GLISLLPMVVDLIGDRDIPI 169 (332)
Q Consensus 114 ~~~v~---s----~~~a~~a~~~g~D~ivv~G~e--------------aGGh~~~~~---~~~~ll~~i~~~~~~~~iPv 169 (332)
+.+++ + .+-++.+.+.|+|+|++.|.. .||.. +.. ..+..+.++++.+.. ++||
T Consensus 215 ~vKlsp~~~~~~~~~ia~~l~~~Gadgi~~~nt~~~~~~~~~~~~~~~~gg~S-G~~~~~~~l~~v~~l~~~~~~-~ipI 292 (344)
T PRK05286 215 LVKIAPDLSDEELDDIADLALEHGIDGVIATNTTLSRDGLKGLPNADEAGGLS-GRPLFERSTEVIRRLYKELGG-RLPI 292 (344)
T ss_pred EEEeCCCCCHHHHHHHHHHHHHhCCcEEEEeCCccccccccccccCCCCCCcc-cHHHHHHHHHHHHHHHHHhCC-CCCE
Confidence 88775 2 234566778899999998752 23332 221 245677777776632 5999
Q ss_pred EeecCcCCHHHHHHHHHcCcceeeeccccccC
Q 020013 170 IAAGGIVDARGYVAALSLGAQGICLGTRFVAS 201 (332)
Q Consensus 170 iaaGGI~~~~~v~~al~~GA~gV~~GT~fl~t 201 (332)
++.|||.+++++.+++.+|||+|++||+++..
T Consensus 293 ig~GGI~s~eda~e~l~aGAd~V~v~~~~~~~ 324 (344)
T PRK05286 293 IGVGGIDSAEDAYEKIRAGASLVQIYSGLIYE 324 (344)
T ss_pred EEECCCCCHHHHHHHHHcCCCHHHHHHHHHHh
Confidence 99999999999999999999999999999853
|
|
| >cd04736 MDH_FMN Mandelate dehydrogenase (MDH)-like FMN-binding domain | Back alignment and domain information |
|---|
Probab=99.31 E-value=1.2e-10 Score=109.80 Aligned_cols=97 Identities=22% Similarity=0.295 Sum_probs=79.1
Q ss_pred HHHHHHhC--CCEEEEecCCHHHHHHHHHcCCCEEEEecCCCCccc-CCCCchhhhHHHHHHHhCCCCCcEEeecCcCCH
Q 020013 102 LVLEAHSA--GVKVVPQVGSFDEARKAVNAGVDAIIVQGREAGGHV-IGQDGLISLLPMVVDLIGDRDIPIIAAGGIVDA 178 (332)
Q Consensus 102 ~i~~~~~~--g~~v~~~v~s~~~a~~a~~~g~D~ivv~G~eaGGh~-~~~~~~~~ll~~i~~~~~~~~iPviaaGGI~~~ 178 (332)
.++.+++. +..|+..|.+.++++.+.+.|+|+|++.+. ||.. .+..+++..++++++.+ ++|||+.|||.++
T Consensus 227 ~i~~ir~~~~~pviiKgV~~~eda~~a~~~G~d~I~VSnh--GGrqld~~~~~~~~L~ei~~~~---~~~vi~dGGIr~g 301 (361)
T cd04736 227 DLRWLRDLWPHKLLVKGIVTAEDAKRCIELGADGVILSNH--GGRQLDDAIAPIEALAEIVAAT---YKPVLIDSGIRRG 301 (361)
T ss_pred HHHHHHHhCCCCEEEecCCCHHHHHHHHHCCcCEEEECCC--CcCCCcCCccHHHHHHHHHHHh---CCeEEEeCCCCCH
Confidence 34555543 455667899999999999999999999765 4433 22345688899999887 6999999999999
Q ss_pred HHHHHHHHcCcceeeeccccccCcc
Q 020013 179 RGYVAALSLGAQGICLGTRFVASEE 203 (332)
Q Consensus 179 ~~v~~al~~GA~gV~~GT~fl~t~E 203 (332)
.|+.++|++||++|.+|+.|+..-.
T Consensus 302 ~Dv~KALaLGA~aV~iGr~~l~~la 326 (361)
T cd04736 302 SDIVKALALGANAVLLGRATLYGLA 326 (361)
T ss_pred HHHHHHHHcCCCEEEECHHHHHHHH
Confidence 9999999999999999999995543
|
MDH is part of a widespread family of homologous FMN-dependent a-hydroxy acid oxidizing enzymes that oxidizes (S)-mandelate to phenylglyoxalate. MDH is an enzyme in the mandelate pathway that occurs in several strains of Pseudomonas which converts (R)-mandelate to benzoate. This family occurs in both prokaryotes and eukaryotes. Members of this family include flavocytochrome b2 (FCB2), glycolate oxidase (GOX), lactate monooxygenase (LMO), mandelate dehydrogenase (MDH), and long chain hydroxyacid oxidase (LCHAO). |
| >PLN02826 dihydroorotate dehydrogenase | Back alignment and domain information |
|---|
Probab=99.31 E-value=2.2e-10 Score=110.22 Aligned_cols=136 Identities=18% Similarity=0.249 Sum_probs=94.2
Q ss_pred cEEEEeecCCC----CHHHHHHHHhc--CCcEEEEccCCCc-------------HHHHHHHHh----------CCCEEEE
Q 020013 65 PFGVGVVLAFP----HNENIKAILSE--KVAVLQVSWGEYS-------------EELVLEAHS----------AGVKVVP 115 (332)
Q Consensus 65 p~gvnl~~~~~----~~~~~~~~~~~--~~~~I~~~~g~~~-------------~~~i~~~~~----------~g~~v~~ 115 (332)
|++||+..+.. .+++.+.+... .+|++.++..+|. .++++.+++ ..++++.
T Consensus 188 ~lgvnIg~nk~~~~~~~Dy~~~~~~~~~~aDylelNiScPNtpglr~lq~~~~l~~ll~~V~~~~~~~~~~~~~~~Pv~v 267 (409)
T PLN02826 188 ILGVNLGKNKTSEDAAADYVQGVRALSQYADYLVINVSSPNTPGLRKLQGRKQLKDLLKKVLAARDEMQWGEEGPPPLLV 267 (409)
T ss_pred eEEEEeccCCCCcccHHHHHHHHHHHhhhCCEEEEECCCCCCCCcccccChHHHHHHHHHHHHHHHHhhhccccCCceEE
Confidence 89999976531 14455444433 3899998755431 133444431 2478887
Q ss_pred ecC---CHHH----HHHHHHcCCCEEEEecC---------------CCCcccCCCC--chhhhHHHHHHHhCCCCCcEEe
Q 020013 116 QVG---SFDE----ARKAVNAGVDAIIVQGR---------------EAGGHVIGQD--GLISLLPMVVDLIGDRDIPIIA 171 (332)
Q Consensus 116 ~v~---s~~~----a~~a~~~g~D~ivv~G~---------------eaGGh~~~~~--~~~~ll~~i~~~~~~~~iPvia 171 (332)
+++ +.++ ++.+.+.|+|+|++.++ +.||..+.+. ..+..++++.+.++. ++|||+
T Consensus 268 KlaPdl~~~di~~ia~~a~~~G~dGIi~~NTt~~r~~dl~~~~~~~~~GGlSG~pl~~~sl~~v~~l~~~~~~-~ipIIg 346 (409)
T PLN02826 268 KIAPDLSKEDLEDIAAVALALGIDGLIISNTTISRPDSVLGHPHADEAGGLSGKPLFDLSTEVLREMYRLTRG-KIPLVG 346 (409)
T ss_pred ecCCCCCHHHHHHHHHHHHHcCCCEEEEEcccCcCccchhcccccccCCCcCCccccHHHHHHHHHHHHHhCC-CCcEEE
Confidence 774 3223 56688999999999762 3455542221 246677888877643 699999
Q ss_pred ecCcCCHHHHHHHHHcCcceeeeccccccC
Q 020013 172 AGGIVDARGYVAALSLGAQGICLGTRFVAS 201 (332)
Q Consensus 172 aGGI~~~~~v~~al~~GA~gV~~GT~fl~t 201 (332)
.|||.+++|+.+++.+||+.||++|+|+..
T Consensus 347 vGGI~sg~Da~e~i~AGAs~VQv~Ta~~~~ 376 (409)
T PLN02826 347 CGGVSSGEDAYKKIRAGASLVQLYTAFAYE 376 (409)
T ss_pred ECCCCCHHHHHHHHHhCCCeeeecHHHHhc
Confidence 999999999999999999999999999874
|
|
| >cd02940 DHPD_FMN Dihydropyrimidine dehydrogenase (DHPD) FMN-binding domain | Back alignment and domain information |
|---|
Probab=99.31 E-value=2.1e-10 Score=106.84 Aligned_cols=188 Identities=16% Similarity=0.175 Sum_probs=122.0
Q ss_pred CccceecCCCCCCCCcHHHHHHHHhCCCceeecCCCC---------------------------CC--------HHHHHH
Q 020013 9 FEYGIVQAPLGPDISGPELVAAVANAGGLGLLRAPDW---------------------------EA--------PDYLRD 53 (332)
Q Consensus 9 ~~~Pii~apM~~g~s~~~la~avs~aGglG~i~~~~~---------------------------~~--------~e~~~~ 53 (332)
++.||+.+.=. ...+.+.......+ |+|++..++. .. .+...+
T Consensus 11 l~nPi~~aag~-~~~~~~~~~~~~~~-G~Gavv~kti~~~~~~~gn~~pr~~~~~~~~~n~~g~~n~e~~s~~~~~~~~~ 88 (299)
T cd02940 11 FPNPFGLASAP-PTTSYPMIRRAFEA-GWGGAVTKTLGLDKDIVTNVSPRIARLRTSGRGQIGFNNIELISEKPLEYWLK 88 (299)
T ss_pred cCCCCEeCCcC-CCCCHHHHHHHHHh-CCCEEEeccccCcCCCCCCCCCeEEEeCCCchhcccccCCccccccCHHHHHH
Confidence 67899987721 12467777777676 4655532210 00 122222
Q ss_pred HHHHHHhhc-CCcEEEEeecC-CCCHHH---HHHHHhcCCcEEEEccCCCc---------------H---HHHHHHHh-C
Q 020013 54 LIRKTRSLT-ERPFGVGVVLA-FPHNEN---IKAILSEKVAVLQVSWGEYS---------------E---ELVLEAHS-A 109 (332)
Q Consensus 54 ~i~~~r~~~-~~p~gvnl~~~-~~~~~~---~~~~~~~~~~~I~~~~g~~~---------------~---~~i~~~~~-~ 109 (332)
.+.+++... +.|+.++++.. .+ +++ ++.+.+.++|+|.++.++|. + ++++.+++ .
T Consensus 89 ~~~~~~~~~~~~p~i~si~G~~~~-~~~~~~a~~~~~~gad~ielN~sCP~~~~~~~~G~~l~~~~~~~~~iv~~v~~~~ 167 (299)
T cd02940 89 EIRELKKDFPDKILIASIMCEYNK-EDWTELAKLVEEAGADALELNFSCPHGMPERGMGAAVGQDPELVEEICRWVREAV 167 (299)
T ss_pred HHHHHHhhCCCCeEEEEecCCCCH-HHHHHHHHHHHhcCCCEEEEECCCCCCCCCCCCchhhccCHHHHHHHHHHHHHhc
Confidence 333333333 47888888775 43 333 34444568999999877642 1 23445554 3
Q ss_pred CCEEEEecCC-----HHHHHHHHHcCCCEEEEecCC----------------------CCcccCCC---CchhhhHHHHH
Q 020013 110 GVKVVPQVGS-----FDEARKAVNAGVDAIIVQGRE----------------------AGGHVIGQ---DGLISLLPMVV 159 (332)
Q Consensus 110 g~~v~~~v~s-----~~~a~~a~~~g~D~ivv~G~e----------------------aGGh~~~~---~~~~~ll~~i~ 159 (332)
.++|+.++.. .+.++.+++.|+|+|++.++- .||.. |+ ...+..+.+++
T Consensus 168 ~~Pv~vKl~~~~~~~~~~a~~~~~~Gadgi~~~Nt~~~~~~id~~~~~~~~~~~~~~~~gg~s-G~a~~p~~l~~v~~~~ 246 (299)
T cd02940 168 KIPVIAKLTPNITDIREIARAAKEGGADGVSAINTVNSLMGVDLDGTPPAPGVEGKTTYGGYS-GPAVKPIALRAVSQIA 246 (299)
T ss_pred CCCeEEECCCCchhHHHHHHHHHHcCCCEEEEecccccccccccccCCccccccCCCCcCccc-CCCcchHHHHHHHHHH
Confidence 6888887652 245667889999999965422 23332 22 12478888888
Q ss_pred HHhCCCCCcEEeecCcCCHHHHHHHHHcCcceeeeccccccC
Q 020013 160 DLIGDRDIPIIAAGGIVDARGYVAALSLGAQGICLGTRFVAS 201 (332)
Q Consensus 160 ~~~~~~~iPviaaGGI~~~~~v~~al~~GA~gV~~GT~fl~t 201 (332)
+.+.. ++|||+.|||.+++|+.+++.+|||+|++||+++..
T Consensus 247 ~~~~~-~ipIig~GGI~~~~da~~~l~aGA~~V~i~ta~~~~ 287 (299)
T cd02940 247 RAPEP-GLPISGIGGIESWEDAAEFLLLGASVVQVCTAVMNQ 287 (299)
T ss_pred HhcCC-CCcEEEECCCCCHHHHHHHHHcCCChheEceeeccc
Confidence 87632 699999999999999999999999999999998864
|
DHPD catalyzes the first step in pyrimidine degradation: the NADPH-dependent reduction of uracil and thymine to the corresponding 5,6-dihydropyrimidines. DHPD contains two FAD, two FMN, and eight [4Fe-4S] clusters, arranged in two electron transfer chains that pass the dimer interface twice. Two of the Fe-S clusters show a hitherto unobserved coordination involving a glutamine residue. |
| >COG0800 Eda 2-keto-3-deoxy-6-phosphogluconate aldolase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.30 E-value=3.2e-11 Score=104.31 Aligned_cols=171 Identities=21% Similarity=0.300 Sum_probs=130.8
Q ss_pred ccceecCCCCCCCCcHHHHHHHHhC---CCceeecCCCCCCHHHHHHHHHHHHhh-cCCcEEEEeecCCCCHHHHHHHHh
Q 020013 10 EYGIVQAPLGPDISGPELVAAVANA---GGLGLLRAPDWEAPDYLRDLIRKTRSL-TERPFGVGVVLAFPHNENIKAILS 85 (332)
Q Consensus 10 ~~Pii~apM~~g~s~~~la~avs~a---GglG~i~~~~~~~~e~~~~~i~~~r~~-~~~p~gvnl~~~~~~~~~~~~~~~ 85 (332)
++|+| |.- ...+++.+..++.+ ||+..|.. .+.+|.. .+.|+.+++. .+.-+|.+.+++ .++++.+.+
T Consensus 12 ~~~vI--~Vl-r~~~~e~a~~~a~Ali~gGi~~IEI-Tl~sp~a-~e~I~~l~~~~p~~lIGAGTVL~---~~q~~~a~~ 83 (211)
T COG0800 12 AQPVV--PVI-RGDDVEEALPLAKALIEGGIPAIEI-TLRTPAA-LEAIRALAKEFPEALIGAGTVLN---PEQARQAIA 83 (211)
T ss_pred HCCee--EEE-EeCCHHHHHHHHHHHHHcCCCeEEE-ecCCCCH-HHHHHHHHHhCcccEEccccccC---HHHHHHHHH
Confidence 56777 664 56788888888876 89999987 4677765 3455555443 345677777764 678999999
Q ss_pred cCCcEEEEccCCCcHHHHHHHHhCCCEEEEecCCHHHHHHHHHcCCCEEEEecCCCCcccCCCCchhhhHHHHHHHhCCC
Q 020013 86 EKVAVLQVSWGEYSEELVLEAHSAGVKVVPQVGSFDEARKAVNAGVDAIIVQGREAGGHVIGQDGLISLLPMVVDLIGDR 165 (332)
Q Consensus 86 ~~~~~I~~~~g~~~~~~i~~~~~~g~~v~~~v~s~~~a~~a~~~g~D~ivv~G~eaGGh~~~~~~~~~ll~~i~~~~~~~ 165 (332)
.|+++|... |. .+++++.+++.++++++.+.|+.|+..+.+.|++.+.+...+.=|. ...++.+.--+ .
T Consensus 84 aGa~fiVsP-~~-~~ev~~~a~~~~ip~~PG~~TptEi~~Ale~G~~~lK~FPa~~~Gg-------~~~~ka~~gP~--~ 152 (211)
T COG0800 84 AGAQFIVSP-GL-NPEVAKAANRYGIPYIPGVATPTEIMAALELGASALKFFPAEVVGG-------PAMLKALAGPF--P 152 (211)
T ss_pred cCCCEEECC-CC-CHHHHHHHHhCCCcccCCCCCHHHHHHHHHcChhheeecCccccCc-------HHHHHHHcCCC--C
Confidence 999999887 54 5789999999999999999999999999999999999865432211 12233322222 2
Q ss_pred CCcEEeecCcCCHHHHHHHHHcCcceeeecccccc
Q 020013 166 DIPIIAAGGIVDARGYVAALSLGAQGICLGTRFVA 200 (332)
Q Consensus 166 ~iPviaaGGI~~~~~v~~al~~GA~gV~~GT~fl~ 200 (332)
+++++..||| +..|+.+++++|+.+|-+||.+..
T Consensus 153 ~v~~~pTGGV-s~~N~~~yla~gv~avG~Gs~l~~ 186 (211)
T COG0800 153 QVRFCPTGGV-SLDNAADYLAAGVVAVGLGSWLVP 186 (211)
T ss_pred CCeEeecCCC-CHHHHHHHHhCCceEEecCccccC
Confidence 6899999999 789999999999888888888763
|
|
| >cd04722 TIM_phosphate_binding TIM barrel proteins share a structurally conserved phosphate binding motif and in general share an eight beta/alpha closed barrel structure | Back alignment and domain information |
|---|
Probab=99.30 E-value=6.3e-11 Score=102.29 Aligned_cols=179 Identities=25% Similarity=0.289 Sum_probs=114.7
Q ss_pred ecCCCCCCC--CcHHHHHHHHhCCCceeecCCCC-CCHHH---HH-HHHHHHHhhcCCcEEEEeecCCCCHHH---HHHH
Q 020013 14 VQAPLGPDI--SGPELVAAVANAGGLGLLRAPDW-EAPDY---LR-DLIRKTRSLTERPFGVGVVLAFPHNEN---IKAI 83 (332)
Q Consensus 14 i~apM~~g~--s~~~la~avs~aGglG~i~~~~~-~~~e~---~~-~~i~~~r~~~~~p~gvnl~~~~~~~~~---~~~~ 83 (332)
+.++|..+. ...+++..+.+ +|.+++..... .++.. .. +.+..++...+.|+.+++..+.+.... ...+
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~-~G~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~ 80 (200)
T cd04722 2 ILALLAGGPSGDPVELAKAAAE-AGADAIIVGTRSSDPEEAETDDKEVLKEVAAETDLPLGVQLAINDAAAAVDIAAAAA 80 (200)
T ss_pred eeeccccCchHHHHHHHHHHHc-CCCCEEEEeeEEECcccCCCccccHHHHHHhhcCCcEEEEEccCCchhhhhHHHHHH
Confidence 467777433 34566666654 44555543210 01110 00 234455555678999999886653222 2477
Q ss_pred HhcCCcEEEEccCCC-----cHHHHHHHHhC--CCEEEEecCCHHHHHH--HHHcCCCEEEEecCCCCcccCCCCc-hhh
Q 020013 84 LSEKVAVLQVSWGEY-----SEELVLEAHSA--GVKVVPQVGSFDEARK--AVNAGVDAIIVQGREAGGHVIGQDG-LIS 153 (332)
Q Consensus 84 ~~~~~~~I~~~~g~~-----~~~~i~~~~~~--g~~v~~~v~s~~~a~~--a~~~g~D~ivv~G~eaGGh~~~~~~-~~~ 153 (332)
.+.++|.|+++...+ ..++++.+++. +++++..++...+... +.+.|+|+|.+.+...++....... ...
T Consensus 81 ~~~g~d~v~l~~~~~~~~~~~~~~~~~i~~~~~~~~v~~~~~~~~~~~~~~~~~~g~d~i~~~~~~~~~~~~~~~~~~~~ 160 (200)
T cd04722 81 RAAGADGVEIHGAVGYLAREDLELIRELREAVPDVKVVVKLSPTGELAAAAAEEAGVDEVGLGNGGGGGGGRDAVPIADL 160 (200)
T ss_pred HHcCCCEEEEeccCCcHHHHHHHHHHHHHHhcCCceEEEEECCCCccchhhHHHcCCCEEEEcCCcCCCCCccCchhHHH
Confidence 888999999996654 45677777775 7888888875444333 4788999999977644433211111 123
Q ss_pred hHHHHHHHhCCCCCcEEeecCcCCHHHHHHHHHcCcceeeecc
Q 020013 154 LLPMVVDLIGDRDIPIIAAGGIVDARGYVAALSLGAQGICLGT 196 (332)
Q Consensus 154 ll~~i~~~~~~~~iPviaaGGI~~~~~v~~al~~GA~gV~~GT 196 (332)
.+..+.... ++||+++|||.+++++.+++..|||+|++||
T Consensus 161 ~~~~~~~~~---~~pi~~~GGi~~~~~~~~~~~~Gad~v~vgs 200 (200)
T cd04722 161 LLILAKRGS---KVPVIAGGGINDPEDAAEALALGADGVIVGS 200 (200)
T ss_pred HHHHHHhcC---CCCEEEECCCCCHHHHHHHHHhCCCEEEecC
Confidence 333444333 7999999999988999999999999999996
|
Specific for this family is the conserved phosphate binding site at the edges of strands 7 and 8. The phosphate comes either from the substrate, as in the case of inosine monophosphate dehydrogenase (IMPDH), or from ribulose-5-phosphate 3-epimerase (RPE) or from cofactors, like FMN. |
| >PRK08883 ribulose-phosphate 3-epimerase; Provisional | Back alignment and domain information |
|---|
Probab=99.29 E-value=1.1e-10 Score=103.66 Aligned_cols=145 Identities=14% Similarity=0.178 Sum_probs=107.8
Q ss_pred HHHHHHhh-cCCcEEEEeecCCCCHHHHHHHHhcCCcEEEEccCC--CcHHHHHHHHhCCCEEEEecC--CHHHHHHHHH
Q 020013 54 LIRKTRSL-TERPFGVGVVLAFPHNENIKAILSEKVAVLQVSWGE--YSEELVLEAHSAGVKVVPQVG--SFDEARKAVN 128 (332)
Q Consensus 54 ~i~~~r~~-~~~p~gvnl~~~~~~~~~~~~~~~~~~~~I~~~~g~--~~~~~i~~~~~~g~~v~~~v~--s~~~a~~a~~ 128 (332)
.++.+|+. ++.|+-|+|++..| +.+++...++|++.|.+|+.. .+.+.++.+|+.|++....+. |+-+...-+-
T Consensus 48 ~i~~i~~~~~~~~~dvHLMv~~p-~~~i~~~~~~gad~i~~H~Ea~~~~~~~l~~ik~~g~k~GlalnP~Tp~~~i~~~l 126 (220)
T PRK08883 48 ICKALRDYGITAPIDVHLMVKPV-DRIIPDFAKAGASMITFHVEASEHVDRTLQLIKEHGCQAGVVLNPATPLHHLEYIM 126 (220)
T ss_pred HHHHHHHhCCCCCEEEEeccCCH-HHHHHHHHHhCCCEEEEcccCcccHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHH
Confidence 46677776 68999999999877 678999999999999999752 245788899999998765443 4433333334
Q ss_pred cCCCEEEEecCC--CCcccCCCCchhhhHHHHHHHhCC--CCCcEEeecCcCCHHHHHHHHHcCcceeeeccccccC
Q 020013 129 AGVDAIIVQGRE--AGGHVIGQDGLISLLPMVVDLIGD--RDIPIIAAGGIVDARGYVAALSLGAQGICLGTRFVAS 201 (332)
Q Consensus 129 ~g~D~ivv~G~e--aGGh~~~~~~~~~ll~~i~~~~~~--~~iPviaaGGI~~~~~v~~al~~GA~gV~~GT~fl~t 201 (332)
.-+|.|++-+.+ .||.. .....+..+.++++...+ .++|+.+.||| +.+++..+.++|||++++||+++..
T Consensus 127 ~~~D~vlvMtV~PGfgGq~-fi~~~lekI~~l~~~~~~~~~~~~I~vdGGI-~~eni~~l~~aGAd~vVvGSaIf~~ 201 (220)
T PRK08883 127 DKVDLILLMSVNPGFGGQS-FIPHTLDKLRAVRKMIDESGRDIRLEIDGGV-KVDNIREIAEAGADMFVAGSAIFGQ 201 (220)
T ss_pred HhCCeEEEEEecCCCCCce-ecHhHHHHHHHHHHHHHhcCCCeeEEEECCC-CHHHHHHHHHcCCCEEEEeHHHhCC
Confidence 468999985543 34443 122446677777766531 24899999999 7999999999999999999998754
|
|
| >PRK02615 thiamine-phosphate pyrophosphorylase; Provisional | Back alignment and domain information |
|---|
Probab=99.28 E-value=1.6e-10 Score=108.66 Aligned_cols=165 Identities=17% Similarity=0.197 Sum_probs=112.9
Q ss_pred HHHHHHhCCCceeecCCCC-CCHHHHHHHHHHHHhhcCCcEEEEeecCCCCHHHHHHHHhcCCcEEEEccCCCcHHHHHH
Q 020013 27 LVAAVANAGGLGLLRAPDW-EAPDYLRDLIRKTRSLTERPFGVGVVLAFPHNENIKAILSEKVAVLQVSWGEYSEELVLE 105 (332)
Q Consensus 27 la~avs~aGglG~i~~~~~-~~~e~~~~~i~~~r~~~~~p~gvnl~~~~~~~~~~~~~~~~~~~~I~~~~g~~~~~~i~~ 105 (332)
.+.++.. +|+..+..... .+...+.+..+.++.+.. .+++.++++ +.++++...++|.|+++..+.+....+.
T Consensus 162 ~l~~al~-~Gv~~VQLR~K~~~~~~~~~~a~~L~~l~~-~~~~~lIIN----D~vdlAl~~~aDGVHLgq~dl~~~~aR~ 235 (347)
T PRK02615 162 VVEAALK-GGVTLVQYRDKTADDRQRLEEAKKLKELCH-RYGALFIVN----DRVDIALAVDADGVHLGQEDLPLAVARQ 235 (347)
T ss_pred HHHHHHH-cCCCEEEECCCCCCHHHHHHHHHHHHHHHH-HhCCeEEEe----ChHHHHHHcCCCEEEeChhhcCHHHHHH
Confidence 3344434 45777755211 233344555555555432 245556663 4578899999999999755544444454
Q ss_pred HHhCCCEEEEecCCHHHHHHHHHcCCCEEEEecC-CCCcccCCCCchhhhHHHHHHHhCCCCCcEEeecCcCCHHHHHHH
Q 020013 106 AHSAGVKVVPQVGSFDEARKAVNAGVDAIIVQGR-EAGGHVIGQDGLISLLPMVVDLIGDRDIPIIAAGGIVDARGYVAA 184 (332)
Q Consensus 106 ~~~~g~~v~~~v~s~~~a~~a~~~g~D~ivv~G~-eaGGh~~~~~~~~~ll~~i~~~~~~~~iPviaaGGI~~~~~v~~a 184 (332)
+...+..+...++|.+++..+.+.|+|||.+... ....|.+.....+..+..+.+.. ++||++.||| +.+++.++
T Consensus 236 llg~~~iIG~S~Hs~~e~~~A~~~GaDYI~lGPvf~T~tKp~~~~~Gle~l~~~~~~~---~iPv~AiGGI-~~~ni~~l 311 (347)
T PRK02615 236 LLGPEKIIGRSTTNPEEMAKAIAEGADYIGVGPVFPTPTKPGKAPAGLEYLKYAAKEA---PIPWFAIGGI-DKSNIPEV 311 (347)
T ss_pred hcCCCCEEEEecCCHHHHHHHHHcCCCEEEECCCcCCCCCCCCCCCCHHHHHHHHHhC---CCCEEEECCC-CHHHHHHH
Confidence 4445667888999999999999999999988322 11222211223367777777655 7999999999 89999999
Q ss_pred HHcCcceeeeccccccC
Q 020013 185 LSLGAQGICLGTRFVAS 201 (332)
Q Consensus 185 l~~GA~gV~~GT~fl~t 201 (332)
+.+||+||.+++.++.+
T Consensus 312 ~~~Ga~gVAvisaI~~a 328 (347)
T PRK02615 312 LQAGAKRVAVVRAIMGA 328 (347)
T ss_pred HHcCCcEEEEeHHHhCC
Confidence 99999999999999965
|
|
| >COG0036 Rpe Pentose-5-phosphate-3-epimerase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.28 E-value=3.4e-10 Score=98.60 Aligned_cols=179 Identities=21% Similarity=0.287 Sum_probs=130.0
Q ss_pred cHHHHHHHHhCCCceeecC----CCC---C--CHHHHHHHHHHHHhhcCCcEEEEeecCCCCHHHHHHHHhcCCcEEEEc
Q 020013 24 GPELVAAVANAGGLGLLRA----PDW---E--APDYLRDLIRKTRSLTERPFGVGVVLAFPHNENIKAILSEKVAVLQVS 94 (332)
Q Consensus 24 ~~~la~avs~aGglG~i~~----~~~---~--~~e~~~~~i~~~r~~~~~p~gvnl~~~~~~~~~~~~~~~~~~~~I~~~ 94 (332)
-.+.+.++.++| ...+.. +.+ . .|+ .++.+|+.++.|+-|++++..| +.+++...++|++.|++|
T Consensus 18 l~~el~~~~~ag-ad~iH~DVMDghFVPNiTfGp~----~v~~l~~~t~~p~DvHLMV~~p-~~~i~~fa~agad~It~H 91 (220)
T COG0036 18 LGEELKALEAAG-ADLIHIDVMDGHFVPNITFGPP----VVKALRKITDLPLDVHLMVENP-DRYIEAFAKAGADIITFH 91 (220)
T ss_pred HHHHHHHHHHcC-CCEEEEeccCCCcCCCcccCHH----HHHHHhhcCCCceEEEEecCCH-HHHHHHHHHhCCCEEEEE
Confidence 355667776665 344432 111 1 233 3667777888999999999887 788999999999999999
Q ss_pred cCC--CcHHHHHHHHhCCCEEEEe--cCCHHHHHHHHHcCCCEEEE--ecCCCCcccCCCCchhhhHHHHHHHhCCC-CC
Q 020013 95 WGE--YSEELVLEAHSAGVKVVPQ--VGSFDEARKAVNAGVDAIIV--QGREAGGHVIGQDGLISLLPMVVDLIGDR-DI 167 (332)
Q Consensus 95 ~g~--~~~~~i~~~~~~g~~v~~~--v~s~~~a~~a~~~g~D~ivv--~G~eaGGh~~~~~~~~~ll~~i~~~~~~~-~i 167 (332)
... ...+.++.+|+.|++.... ..|+-++..-+-.-+|.|.+ .++..||.. .....+..++++++...+. ++
T Consensus 92 ~E~~~~~~r~i~~Ik~~G~kaGv~lnP~Tp~~~i~~~l~~vD~VllMsVnPGfgGQ~-Fi~~~l~Ki~~lr~~~~~~~~~ 170 (220)
T COG0036 92 AEATEHIHRTIQLIKELGVKAGLVLNPATPLEALEPVLDDVDLVLLMSVNPGFGGQK-FIPEVLEKIRELRAMIDERLDI 170 (220)
T ss_pred eccCcCHHHHHHHHHHcCCeEEEEECCCCCHHHHHHHHhhCCEEEEEeECCCCcccc-cCHHHHHHHHHHHHHhcccCCe
Confidence 642 3457889999999997654 34666666666667999987 566667765 2335567777777766421 45
Q ss_pred cEEeecCcCCHHHHHHHHHcCcceeeeccccccCccCCCCHHHHHHHhc
Q 020013 168 PIIAAGGIVDARGYVAALSLGAQGICLGTRFVASEESYAHPEYKRKLVE 216 (332)
Q Consensus 168 PviaaGGI~~~~~v~~al~~GA~gV~~GT~fl~t~Es~~~~~~k~~~~~ 216 (332)
-+-..||| +.+++..+.++|||-+++||++....+ |++.+..
T Consensus 171 ~IeVDGGI-~~~t~~~~~~AGad~~VaGSalF~~~d------~~~~i~~ 212 (220)
T COG0036 171 LIEVDGGI-NLETIKQLAAAGADVFVAGSALFGADD------YKATIRE 212 (220)
T ss_pred EEEEeCCc-CHHHHHHHHHcCCCEEEEEEEEeCCcc------HHHHHHH
Confidence 68899999 899999999999999999997766544 6666554
|
|
| >TIGR03128 RuMP_HxlA 3-hexulose-6-phosphate synthase | Back alignment and domain information |
|---|
Probab=99.27 E-value=5.4e-10 Score=98.41 Aligned_cols=174 Identities=14% Similarity=0.148 Sum_probs=115.4
Q ss_pred CcHHHHHHHHh--CCCceeecCC-CCCCHHHHHHHHHHHHhh-cCCcEEEEeecCCCCHHHHHHHHhcCCcEEEEccCCC
Q 020013 23 SGPELVAAVAN--AGGLGLLRAP-DWEAPDYLRDLIRKTRSL-TERPFGVGVVLAFPHNENIKAILSEKVAVLQVSWGEY 98 (332)
Q Consensus 23 s~~~la~avs~--aGglG~i~~~-~~~~~e~~~~~i~~~r~~-~~~p~gvnl~~~~~~~~~~~~~~~~~~~~I~~~~g~~ 98 (332)
.+++-+..+++ .+++.++..+ .+.++.. .+.++.+|+. ++..+.+.+.+.++....++.+.+.|+|+|.+|...+
T Consensus 9 ~~~~~a~~~~~~l~~~v~~iev~~~l~~~~g-~~~i~~l~~~~~~~~i~~d~k~~d~~~~~~~~~~~~Gad~i~vh~~~~ 87 (206)
T TIGR03128 9 LDIEEALELAEKVADYVDIIEIGTPLIKNEG-IEAVKEMKEAFPDRKVLADLKTMDAGEYEAEQAFAAGADIVTVLGVAD 87 (206)
T ss_pred CCHHHHHHHHHHcccCeeEEEeCCHHHHHhC-HHHHHHHHHHCCCCEEEEEEeeccchHHHHHHHHHcCCCEEEEeccCC
Confidence 34444444443 3567777653 1212221 3456666654 3456777764444433458888999999999985432
Q ss_pred ---cHHHHHHHHhCCCEEEEecCC----HHHHHHHHHcCCCEEEEecCCCCcccCCCCchhhhHHHHHHHhCCCCCcEEe
Q 020013 99 ---SEELVLEAHSAGVKVVPQVGS----FDEARKAVNAGVDAIIVQGREAGGHVIGQDGLISLLPMVVDLIGDRDIPIIA 171 (332)
Q Consensus 99 ---~~~~i~~~~~~g~~v~~~v~s----~~~a~~a~~~g~D~ivv~G~eaGGh~~~~~~~~~ll~~i~~~~~~~~iPvia 171 (332)
+.++++.+++.|++++..+.+ .++++.+.+.|+|+|.+. +...|...+. ..+..+.++++.++ .+++.+
T Consensus 88 ~~~~~~~i~~~~~~g~~~~~~~~~~~t~~~~~~~~~~~g~d~v~~~-pg~~~~~~~~-~~~~~i~~l~~~~~--~~~i~v 163 (206)
T TIGR03128 88 DATIKGAVKAAKKHGKEVQVDLINVKDKVKRAKELKELGADYIGVH-TGLDEQAKGQ-NPFEDLQTILKLVK--EARVAV 163 (206)
T ss_pred HHHHHHHHHHHHHcCCEEEEEecCCCChHHHHHHHHHcCCCEEEEc-CCcCcccCCC-CCHHHHHHHHHhcC--CCcEEE
Confidence 246788889999999876532 478888888999999874 3222222121 23456667766653 456777
Q ss_pred ecCcCCHHHHHHHHHcCcceeeeccccccCc
Q 020013 172 AGGIVDARGYVAALSLGAQGICLGTRFVASE 202 (332)
Q Consensus 172 aGGI~~~~~v~~al~~GA~gV~~GT~fl~t~ 202 (332)
.||| +.+++.+++..||+++.+||.++.++
T Consensus 164 ~GGI-~~~n~~~~~~~Ga~~v~vGsai~~~~ 193 (206)
T TIGR03128 164 AGGI-NLDTIPDVIKLGPDIVIVGGAITKAA 193 (206)
T ss_pred ECCc-CHHHHHHHHHcCCCEEEEeehhcCCC
Confidence 9999 89999999999999999999987653
|
at the cost of also yielding formaldehyde. These latter species tend usually have a formaldehyde-activating enzyme to attach formaldehyde to the C1 carrier tetrahydromethanopterin. In these species, the enzyme is viewed as a lyase rather than a synthase and is called D-arabino 3-hexulose 6-phosphate formaldehyde lyase. Note that there is some overlap in specificity with the Escherichia coli enzyme 3-keto-L-gulonate 6-phosphate decarboxylase. |
| >PF02581 TMP-TENI: Thiamine monophosphate synthase/TENI; InterPro: IPR003733 Thiamine monophosphate synthase (TMP) (2 | Back alignment and domain information |
|---|
Probab=99.27 E-value=1.2e-10 Score=100.38 Aligned_cols=164 Identities=18% Similarity=0.218 Sum_probs=108.3
Q ss_pred cHHHHHHHHhCCCceeecCCC-CCCHHHHHHHHHHHHhhcCCcEEEEeecCCCCHHHHHHHHhcCCcEEEEccCCCcHHH
Q 020013 24 GPELVAAVANAGGLGLLRAPD-WEAPDYLRDLIRKTRSLTERPFGVGVVLAFPHNENIKAILSEKVAVLQVSWGEYSEEL 102 (332)
Q Consensus 24 ~~~la~avs~aGglG~i~~~~-~~~~e~~~~~i~~~r~~~~~p~gvnl~~~~~~~~~~~~~~~~~~~~I~~~~g~~~~~~ 102 (332)
..+.+.++.++| +.++.... ..+.+++.+.++++.+.... +++.++++ +..+.+.+.+++.|++...+.+...
T Consensus 14 ~~~~l~~~~~~g-v~~v~lR~k~~~~~~~~~~a~~l~~~~~~-~~~~liin----~~~~la~~~~~dGvHl~~~~~~~~~ 87 (180)
T PF02581_consen 14 FLEQLEAALAAG-VDLVQLREKDLSDEELLELARRLAELCQK-YGVPLIIN----DRVDLALELGADGVHLGQSDLPPAE 87 (180)
T ss_dssp HHHHHHHHHHTT--SEEEEE-SSS-HHHHHHHHHHHHHHHHH-TTGCEEEE----S-HHHHHHCT-SEEEEBTTSSSHHH
T ss_pred HHHHHHHHHHCC-CcEEEEcCCCCCccHHHHHHHHHHHHhhc-ceEEEEec----CCHHHHHhcCCCEEEecccccchHH
Confidence 344455554544 77775421 13456667777776654321 22333442 3577888999999999865555555
Q ss_pred HHHHHhCCCEEEEecCCHHHHHHHHHcCCCEEEEecC-CCCcccCCCCchhhhHHHHHHHhCCCCCcEEeecCcCCHHHH
Q 020013 103 VLEAHSAGVKVVPQVGSFDEARKAVNAGVDAIIVQGR-EAGGHVIGQDGLISLLPMVVDLIGDRDIPIIAAGGIVDARGY 181 (332)
Q Consensus 103 i~~~~~~g~~v~~~v~s~~~a~~a~~~g~D~ivv~G~-eaGGh~~~~~~~~~ll~~i~~~~~~~~iPviaaGGI~~~~~v 181 (332)
.+.....+..+...+++.++++.+.+.|+||+.+... ..-.|.+.+...+..+.++.+.. ++||++-||| +++++
T Consensus 88 ~r~~~~~~~~ig~S~h~~~e~~~a~~~g~dYv~~gpvf~T~sk~~~~~~g~~~l~~~~~~~---~~pv~AlGGI-~~~~i 163 (180)
T PF02581_consen 88 ARKLLGPDKIIGASCHSLEEAREAEELGADYVFLGPVFPTSSKPGAPPLGLDGLREIARAS---PIPVYALGGI-TPENI 163 (180)
T ss_dssp HHHHHTTTSEEEEEESSHHHHHHHHHCTTSEEEEETSS--SSSSS-TTCHHHHHHHHHHHT---SSCEEEESS---TTTH
T ss_pred hhhhcccceEEEeecCcHHHHHHhhhcCCCEEEECCccCCCCCccccccCHHHHHHHHHhC---CCCEEEEcCC-CHHHH
Confidence 5665566788999999999999999999999998443 22223212223477788888777 7999999999 89999
Q ss_pred HHHHHcCcceeeeccc
Q 020013 182 VAALSLGAQGICLGTR 197 (332)
Q Consensus 182 ~~al~~GA~gV~~GT~ 197 (332)
.++.++||+||.+.++
T Consensus 164 ~~l~~~Ga~gvAvi~a 179 (180)
T PF02581_consen 164 PELREAGADGVAVISA 179 (180)
T ss_dssp HHHHHTT-SEEEESHH
T ss_pred HHHHHcCCCEEEEEee
Confidence 9999999999998765
|
5.1.3 from EC) catalyzes the substitution of the pyrophosphate of 2-methyl-4-amino-5- hydroxymethylpyrimidine pyrophosphate by 4-methyl-5- (beta-hydroxyethyl)thiazole phosphate to yield thiamine phosphate in the thiamine biosynthesis pathway []. TENI, a protein from Bacillus subtilis that regulates the production of several extracellular enzymes by reducing alkaline protease production belongs to this group [].; GO: 0004789 thiamine-phosphate diphosphorylase activity, 0009228 thiamine biosynthetic process; PDB: 3NL5_A 3NL2_A 3NM1_A 3NM3_C 3NL6_B 3NL3_A 3CEU_A 3O63_B 3QH2_C 1YAD_D .... |
| >COG0042 tRNA-dihydrouridine synthase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.27 E-value=1.5e-10 Score=108.61 Aligned_cols=192 Identities=20% Similarity=0.277 Sum_probs=133.9
Q ss_pred cCCccceecCCCCCCCCcHHHHHHHHhCCCceeecCCCCCCHHHH----HHHHHHHHh-hcCCcEEEEeecCCCC--HHH
Q 020013 7 LGFEYGIVQAPLGPDISGPELVAAVANAGGLGLLRAPDWEAPDYL----RDLIRKTRS-LTERPFGVGVVLAFPH--NEN 79 (332)
Q Consensus 7 l~~~~Pii~apM~~g~s~~~la~avs~aGglG~i~~~~~~~~e~~----~~~i~~~r~-~~~~p~gvnl~~~~~~--~~~ 79 (332)
...+.+++.|||. |+++..+..-+...|+-+...+. +.+...+ ++....... ..+.|+.+++....|. .+.
T Consensus 7 ~~~~~~~~lAPM~-gvtd~~fR~l~~~~ga~~~~~TE-mv~~~~~~~~~~~~~~~~~~~~~e~p~~vQl~gsdp~~l~ea 84 (323)
T COG0042 7 IELRNRVILAPMA-GVTDLPFRRLARELGAYDLLYTE-MVSAKALLHGRKKFLLLLDELEEERPVAVQLGGSDPELLAEA 84 (323)
T ss_pred ccccCcEEEecCC-CCccHHHHHHHHHhCCCceEEEc-cEEEhhhccCCcchhhhcCcCCCCCCEEEEecCCCHHHHHHH
Confidence 4457899999998 79999998877775654555543 2222211 111122211 1257899999988762 234
Q ss_pred HHHHHhcCCcEEEEccCCCcHHH-------------------HHHHHhC-C-CEEEEecC---------CHHHHHHHHHc
Q 020013 80 IKAILSEKVAVLQVSWGEYSEEL-------------------VLEAHSA-G-VKVVPQVG---------SFDEARKAVNA 129 (332)
Q Consensus 80 ~~~~~~~~~~~I~~~~g~~~~~~-------------------i~~~~~~-g-~~v~~~v~---------s~~~a~~a~~~ 129 (332)
...+.+.+++.|.+++|+|.+++ ++.+++. + ++|.+++- ..+-++.+.+.
T Consensus 85 A~~~~~~g~~~IdlN~GCP~~~V~~~g~Ga~Ll~~p~lv~~iv~a~~~av~~iPVTVKiRlG~d~~~~~~~~ia~~~~~~ 164 (323)
T COG0042 85 AKIAEELGADIIDLNCGCPSPKVVKGGAGAALLKNPELLAEIVKAMVEAVGDIPVTVKIRLGWDDDDILALEIARILEDA 164 (323)
T ss_pred HHHHHhcCCCEEeeeCCCChHHhcCCCcchhhcCCHHHHHHHHHHHHHhhCCCCeEEEEecccCcccccHHHHHHHHHhc
Confidence 55667788999999999875432 2334443 3 77776542 23456778889
Q ss_pred CCCEEEEecCCCCcccCCCCchhhhHHHHHHHhCCCCCcEEeecCcCCHHHHHHHHH-cCcceeeeccccccCcc
Q 020013 130 GVDAIIVQGREAGGHVIGQDGLISLLPMVVDLIGDRDIPIIAAGGIVDARGYVAALS-LGAQGICLGTRFVASEE 203 (332)
Q Consensus 130 g~D~ivv~G~eaGGh~~~~~~~~~ll~~i~~~~~~~~iPviaaGGI~~~~~v~~al~-~GA~gV~~GT~fl~t~E 203 (332)
|+|.+.|.|+...-.. .....|..|.++++.++ ++|||+.|+|.+++++.+.|+ .|+|||++|...+..+.
T Consensus 165 g~~~ltVHgRtr~~~y-~~~ad~~~I~~vk~~~~--~ipvi~NGdI~s~~~a~~~l~~tg~DgVMigRga~~nP~ 236 (323)
T COG0042 165 GADALTVHGRTRAQGY-LGPADWDYIKELKEAVP--SIPVIANGDIKSLEDAKEMLEYTGADGVMIGRGALGNPW 236 (323)
T ss_pred CCCEEEEecccHHhcC-CCccCHHHHHHHHHhCC--CCeEEeCCCcCCHHHHHHHHHhhCCCEEEEcHHHccCCc
Confidence 9999999987542211 11256999999999883 399999999999999999998 57999999999886654
|
|
| >TIGR01036 pyrD_sub2 dihydroorotate dehydrogenase, subfamily 2 | Back alignment and domain information |
|---|
Probab=99.27 E-value=1.7e-10 Score=108.79 Aligned_cols=188 Identities=19% Similarity=0.269 Sum_probs=118.9
Q ss_pred CccceecCCCCCCCCcHHHHHHHHhCCCceeecCCCC--------C------C-------------HHHHHHHHHHHHh-
Q 020013 9 FEYGIVQAPLGPDISGPELVAAVANAGGLGLLRAPDW--------E------A-------------PDYLRDLIRKTRS- 60 (332)
Q Consensus 9 ~~~Pii~apM~~g~s~~~la~avs~aGglG~i~~~~~--------~------~-------------~e~~~~~i~~~r~- 60 (332)
++.||+.+.= ...+.+.......+ |+|++..++. . . ...++..++++++
T Consensus 55 l~NPi~lAsG--~~~~~~~~~~~~~~-G~Gavv~kTvt~~p~~gn~~Pr~~~~~~~~~~iN~~Gl~n~G~~~~l~~i~~~ 131 (335)
T TIGR01036 55 FPNPLGLAAG--FDKDGEAIDALGAM-GFGFLEIGTVTPKPQPGNPRPRLFRLIEDEALINRMGFNNHGADVLVERLKRA 131 (335)
T ss_pred CCCCcEeCCc--cCCCHHHHHHHHhc-CCCEEEeCCcCCCCCCCCCCCCEEECccccccccCCCCCChhHHHHHHHHhhc
Confidence 5679987542 23466777777766 5666643210 0 0 1123444555543
Q ss_pred hcCCcEEEEeecCC------CCHHHHHHHHhcC--CcEEEEccCCCc-------------HHHHHHHHhC--------CC
Q 020013 61 LTERPFGVGVVLAF------PHNENIKAILSEK--VAVLQVSWGEYS-------------EELVLEAHSA--------GV 111 (332)
Q Consensus 61 ~~~~p~gvnl~~~~------~~~~~~~~~~~~~--~~~I~~~~g~~~-------------~~~i~~~~~~--------g~ 111 (332)
..+.|++||+..+. ..+++.+.+.... +|++.+++.+|. .++++.+++. .+
T Consensus 132 ~~~~~i~vsi~~~~~~~~~~~~~dy~~~~~~~~~~ad~iElNlScPn~~~~~~~~~~~~~~~i~~~V~~~~~~~~~~~~~ 211 (335)
T TIGR01036 132 RYKGPIGINIGKNKDTPSEDAKEDYAACLRKLGPLADYLVVNVSSPNTPGLRDLQYKAELRDLLTAVKQEQDGLRRVHRV 211 (335)
T ss_pred cCCCcEEEEEeCCCCCCcccCHHHHHHHHHHHhhhCCEEEEEccCCCCCCcccccCHHHHHHHHHHHHHHHHhhhhccCC
Confidence 23578999986652 1245555555444 999998765431 1344444331 27
Q ss_pred EEEEecCC------H-HHHHHHHHcCCCEEEEecC--------------CCCcccCCC---CchhhhHHHHHHHhCCCCC
Q 020013 112 KVVPQVGS------F-DEARKAVNAGVDAIIVQGR--------------EAGGHVIGQ---DGLISLLPMVVDLIGDRDI 167 (332)
Q Consensus 112 ~v~~~v~s------~-~~a~~a~~~g~D~ivv~G~--------------eaGGh~~~~---~~~~~ll~~i~~~~~~~~i 167 (332)
+++.+++. . +.++.+.+.|+|+|++.++ +.||.. |+ ...+..+.++.+.+.. ++
T Consensus 212 Pv~vKLsP~~~~~~i~~ia~~~~~~GadGi~l~NT~~~~~~~~~~~~~~~~GGlS-G~~i~p~al~~v~~~~~~~~~-~i 289 (335)
T TIGR01036 212 PVLVKIAPDLTESDLEDIADSLVELGIDGVIATNTTVSRSLVQGPKNSDETGGLS-GKPLQDKSTEIIRRLYAELQG-RL 289 (335)
T ss_pred ceEEEeCCCCCHHHHHHHHHHHHHhCCcEEEEECCCCccccccCccccCCCCccc-CHHHHHHHHHHHHHHHHHhCC-CC
Confidence 88877652 2 3455678899999998663 224433 22 1235566666665532 59
Q ss_pred cEEeecCcCCHHHHHHHHHcCcceeeeccccccC
Q 020013 168 PIIAAGGIVDARGYVAALSLGAQGICLGTRFVAS 201 (332)
Q Consensus 168 PviaaGGI~~~~~v~~al~~GA~gV~~GT~fl~t 201 (332)
|||+.|||.+++|+.+++.+||+.||+||+++..
T Consensus 290 piig~GGI~~~~da~e~l~aGA~~Vqv~ta~~~~ 323 (335)
T TIGR01036 290 PIIGVGGISSAQDALEKIRAGASLLQIYSGFIYW 323 (335)
T ss_pred CEEEECCCCCHHHHHHHHHcCCcHHHhhHHHHHh
Confidence 9999999999999999999999999999999853
|
The subfamilies 1 and 2 share extensive homology, particularly toward the C-terminus. This subfamily has a longer N-terminal region. |
| >PRK01222 N-(5'-phosphoribosyl)anthranilate isomerase; Provisional | Back alignment and domain information |
|---|
Probab=99.26 E-value=5.1e-10 Score=98.77 Aligned_cols=166 Identities=22% Similarity=0.337 Sum_probs=115.8
Q ss_pred CCCcHHHHHHHHhCC--Cceeec---CCCCCCHHHHHHHHHHHHhhcCCcEEEEeecCCCCHHHHHHHHhcCCcEEEEcc
Q 020013 21 DISGPELVAAVANAG--GLGLLR---APDWEAPDYLRDLIRKTRSLTERPFGVGVVLAFPHNENIKAILSEKVAVLQVSW 95 (332)
Q Consensus 21 g~s~~~la~avs~aG--glG~i~---~~~~~~~e~~~~~i~~~r~~~~~p~gvnl~~~~~~~~~~~~~~~~~~~~I~~~~ 95 (332)
|+++++.+..++++| .+||+. .+++.+++..+++.+.++. ...-|.++.+...++..+.+.+.++++|++|
T Consensus 9 Gi~~~eda~~~~~~Gad~iGfI~~~~S~R~V~~~~a~~i~~~~~~---~i~~VgVf~~~~~~~i~~~~~~~~~d~vQLH- 84 (210)
T PRK01222 9 GITTPEDAEAAAELGADAIGFVFYPKSPRYVSPEQAAELAAALPP---FVKVVGVFVNASDEEIDEIVETVPLDLLQLH- 84 (210)
T ss_pred CCCcHHHHHHHHHcCCCEEEEccCCCCCCcCCHHHHHHHHHhCCC---CCCEEEEEeCCCHHHHHHHHHhcCCCEEEEC-
Confidence 689999999999998 599995 3355677777766665542 2234677887765666777778899999999
Q ss_pred CCCcHHHHHHHHh-CCCEEEEec--CCHHHHHHHH--HcCCCEEEEecC--CCCcccCCCCchhhhHHHHHHHhCCCCCc
Q 020013 96 GEYSEELVLEAHS-AGVKVVPQV--GSFDEARKAV--NAGVDAIIVQGR--EAGGHVIGQDGLISLLPMVVDLIGDRDIP 168 (332)
Q Consensus 96 g~~~~~~i~~~~~-~g~~v~~~v--~s~~~a~~a~--~~g~D~ivv~G~--eaGGh~~~~~~~~~ll~~i~~~~~~~~iP 168 (332)
|..+.++++.+++ .+++++..+ .+..+...+. ...+|+++++.. ..||+ |....|..++ ..+ +.|
T Consensus 85 g~e~~~~~~~l~~~~~~~iik~i~v~~~~~l~~~~~~~~~~d~~L~Ds~~~~~GGt--G~~~dw~~l~---~~~---~~p 156 (210)
T PRK01222 85 GDETPEFCRQLKRRYGLPVIKALRVRSAGDLEAAAAYYGDADGLLLDAYVGLPGGT--GKTFDWSLLP---AGL---AKP 156 (210)
T ss_pred CCCCHHHHHHHHhhcCCcEEEEEecCCHHHHHHHHhhhccCCEEEEcCCCCCCCCC--CCccchHHhh---hcc---CCC
Confidence 5567788888876 357776443 3333333322 236899999753 23443 3334566652 122 469
Q ss_pred EEeecCcCCHHHHHHHHH-cCcceeeeccccc
Q 020013 169 IIAAGGIVDARGYVAALS-LGAQGICLGTRFV 199 (332)
Q Consensus 169 viaaGGI~~~~~v~~al~-~GA~gV~~GT~fl 199 (332)
++.|||| +++|+.+++. .+..||-+-|.+=
T Consensus 157 ~~LAGGi-~peNv~~ai~~~~p~gvDvsSgvE 187 (210)
T PRK01222 157 WILAGGL-NPDNVAEAIRQVRPYGVDVSSGVE 187 (210)
T ss_pred EEEECCC-CHHHHHHHHHhcCCCEEEecCceE
Confidence 9999999 8999999997 4899999987764
|
|
| >COG0167 PyrD Dihydroorotate dehydrogenase [Nucleotide transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.26 E-value=4.3e-10 Score=103.81 Aligned_cols=193 Identities=21% Similarity=0.296 Sum_probs=121.4
Q ss_pred hhcC--CccceecCCCCCCCCcHHHHHHHHhCCCceeecCCC--------CCCH-------------------HHHHHHH
Q 020013 5 GMLG--FEYGIVQAPLGPDISGPELVAAVANAGGLGLLRAPD--------WEAP-------------------DYLRDLI 55 (332)
Q Consensus 5 ~~l~--~~~Pii~apM~~g~s~~~la~avs~aGglG~i~~~~--------~~~~-------------------e~~~~~i 55 (332)
+++| ++.|++.|.=.. -.+.+...+..+.| +|++..++ +..| ..+...+
T Consensus 5 ~~~Gl~f~NPl~lAaG~~-~~~~~~~~~~~~~g-~G~i~~ktvt~~pq~Gnp~PR~~~l~~~~~~iN~mG~~N~G~~~~~ 82 (310)
T COG0167 5 EILGLKFPNPLGLAAGFD-GKNGEELDALAALG-FGAIVTKTVTPEPQEGNPKPRLFRLPEDEGLINRMGFNNPGADAFL 82 (310)
T ss_pred eecceecCCCCeEcccCC-ccCHHHHHHHHhcC-CceEEecCCCCcCCCCCCCCeEEEecCcccHHHhcCCCchhHHHHH
Confidence 3455 557998754321 24777778887777 88875422 1111 1133444
Q ss_pred HHHHhhc-C-CcEEEEeecCC----C--CHHHHHHHHhcC-CcEEEEccCCCc----------H----HHHHHHHh-CCC
Q 020013 56 RKTRSLT-E-RPFGVGVVLAF----P--HNENIKAILSEK-VAVLQVSWGEYS----------E----ELVLEAHS-AGV 111 (332)
Q Consensus 56 ~~~r~~~-~-~p~gvnl~~~~----~--~~~~~~~~~~~~-~~~I~~~~g~~~----------~----~~i~~~~~-~g~ 111 (332)
++++... . .|.++|+..+. . ..+++..+.+.+ +|++.++..+|. . ++++.+++ ..+
T Consensus 83 ~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~d~~~~~~~~~~ad~ielNiScPnt~g~~~l~~~~e~l~~l~~~vk~~~~~ 162 (310)
T COG0167 83 EELKLAKYEGKPIGVNIGKNKGGPSEEAWADYARLLEEAGDADAIELNISCPNTPGGRALGQDPELLEKLLEAVKAATKV 162 (310)
T ss_pred HHHHhhhhccCCcCcceEEecCCCcHHHHHHHHHHHHhcCCCCEEEEEccCCCCCChhhhccCHHHHHHHHHHHHhcccC
Confidence 4433221 1 24555554432 1 244555666666 899998765542 1 23334443 357
Q ss_pred EEEEecC-CHH----HHHHHHHcCCCEEEEecC------------------CCCcccCCC---CchhhhHHHHHHHhCCC
Q 020013 112 KVVPQVG-SFD----EARKAVNAGVDAIIVQGR------------------EAGGHVIGQ---DGLISLLPMVVDLIGDR 165 (332)
Q Consensus 112 ~v~~~v~-s~~----~a~~a~~~g~D~ivv~G~------------------eaGGh~~~~---~~~~~ll~~i~~~~~~~ 165 (332)
+|+.+++ +.+ -|+.+.+.|+|+|++.++ +.||-. |+ ...+..+.++.+.+..
T Consensus 163 Pv~vKl~P~~~di~~iA~~~~~~g~Dgl~~~NT~~~~~~id~~~~~~~~~~~~GGLS-G~~ikp~al~~v~~l~~~~~~- 240 (310)
T COG0167 163 PVFVKLAPNITDIDEIAKAAEEAGADGLIAINTTKSGMKIDLETKKPVLANETGGLS-GPPLKPIALRVVAELYKRLGG- 240 (310)
T ss_pred ceEEEeCCCHHHHHHHHHHHHHcCCcEEEEEeeccccccccccccccccCcCCCCcC-cccchHHHHHHHHHHHHhcCC-
Confidence 8888776 343 355678899999998663 123332 22 1246677788877643
Q ss_pred CCcEEeecCcCCHHHHHHHHHcCcceeeeccccccC
Q 020013 166 DIPIIAAGGIVDARGYVAALSLGAQGICLGTRFVAS 201 (332)
Q Consensus 166 ~iPviaaGGI~~~~~v~~al~~GA~gV~~GT~fl~t 201 (332)
++|||..|||.|++|+.+.+.+||+.||+||+++.-
T Consensus 241 ~ipIIGvGGI~s~~DA~E~i~aGA~~vQv~Tal~~~ 276 (310)
T COG0167 241 DIPIIGVGGIETGEDALEFILAGASAVQVGTALIYK 276 (310)
T ss_pred CCcEEEecCcCcHHHHHHHHHcCCchheeeeeeeee
Confidence 699999999999999999999999999999998855
|
|
| >PF01207 Dus: Dihydrouridine synthase (Dus); InterPro: IPR001269 Members of this family catalyse the reduction of the 5,6-double bond of a uridine residue on tRNA | Back alignment and domain information |
|---|
Probab=99.25 E-value=6.6e-11 Score=110.56 Aligned_cols=184 Identities=20% Similarity=0.246 Sum_probs=109.5
Q ss_pred ecCCCCCCCCcHHHHHHHHhCCCceeecCCCCCCHHHHHHH----HHHHHhh-cCCcEEEEeecCCCC--HHHHHHHHhc
Q 020013 14 VQAPLGPDISGPELVAAVANAGGLGLLRAPDWEAPDYLRDL----IRKTRSL-TERPFGVGVVLAFPH--NENIKAILSE 86 (332)
Q Consensus 14 i~apM~~g~s~~~la~avs~aGglG~i~~~~~~~~e~~~~~----i~~~r~~-~~~p~gvnl~~~~~~--~~~~~~~~~~ 86 (332)
|.|||. |+|+..+...+.+.|+-++..++ +.+.+.+-.. ...+... .+.|+.++|+.+++. .+..+.+.+.
T Consensus 1 ~LAPM~-g~td~~fR~l~~~~g~~~~~~te-mi~a~~~~~~~~~~~~~~~~~~~~~p~~~Ql~g~~~~~~~~aa~~~~~~ 78 (309)
T PF01207_consen 1 ILAPMA-GVTDLPFRRLCREFGADDLTYTE-MISAKAILRSNKKTIRLLPFLPNERPLIVQLFGNDPEDLAEAAEIVAEL 78 (309)
T ss_dssp -E---T-TTSSHHHHHHHHCCTSSSBEE-S--EEHHHHHCT-HHHHHHS-GCC-T-TEEEEEE-S-HHHHHHHHHHHCCT
T ss_pred CccCCC-CCchHHHHHHHHHHCCCeEEEcC-CEEECcccccccceeecccccccccceeEEEeeccHHHHHHHHHhhhcc
Confidence 468998 79999999988888877666664 4444332211 1112111 246899999998762 1223333445
Q ss_pred CCcEEEEccCCCcHHH-------------------HHHHHh-CCCEEEEecC---------CHHHHHHHHHcCCCEEEEe
Q 020013 87 KVAVLQVSWGEYSEEL-------------------VLEAHS-AGVKVVPQVG---------SFDEARKAVNAGVDAIIVQ 137 (332)
Q Consensus 87 ~~~~I~~~~g~~~~~~-------------------i~~~~~-~g~~v~~~v~---------s~~~a~~a~~~g~D~ivv~ 137 (332)
+++.|.+++|+|.+.+ ++.+++ .+++|-+++- +.+-++.+.++|+|.|.+.
T Consensus 79 ~~~~IDlN~GCP~~~v~~~g~Ga~Ll~~p~~~~~iv~~~~~~~~~pvsvKiR~g~~~~~~~~~~~~~~l~~~G~~~i~vH 158 (309)
T PF01207_consen 79 GFDGIDLNMGCPAPKVTKGGAGAALLKDPDLLAEIVKAVRKAVPIPVSVKIRLGWDDSPEETIEFARILEDAGVSAITVH 158 (309)
T ss_dssp T-SEEEEEE---SHHHHHCT-GGGGGC-HHHHHHHHHHHHHH-SSEEEEEEESECT--CHHHHHHHHHHHHTT--EEEEE
T ss_pred CCcEEeccCCCCHHHHhcCCcChhhhcChHHhhHHHHhhhcccccceEEecccccccchhHHHHHHHHhhhcccceEEEe
Confidence 8999999999875433 233333 4677776542 2345667788999999999
Q ss_pred cCCCCcccCCCCchhhhHHHHHHHhCCCCCcEEeecCcCCHHHHHHHHHc-CcceeeeccccccCcc
Q 020013 138 GREAGGHVIGQDGLISLLPMVVDLIGDRDIPIIAAGGIVDARGYVAALSL-GAQGICLGTRFVASEE 203 (332)
Q Consensus 138 G~eaGGh~~~~~~~~~ll~~i~~~~~~~~iPviaaGGI~~~~~v~~al~~-GA~gV~~GT~fl~t~E 203 (332)
|+...-.. .....|+.+.++++.+ ++|||+.|||.+.+++.+.+.. |+|||++|+..+..+-
T Consensus 159 ~Rt~~q~~-~~~a~w~~i~~i~~~~---~ipvi~NGdI~s~~d~~~~~~~tg~dgvMigRgal~nP~ 221 (309)
T PF01207_consen 159 GRTRKQRY-KGPADWEAIAEIKEAL---PIPVIANGDIFSPEDAERMLEQTGADGVMIGRGALGNPW 221 (309)
T ss_dssp CS-TTCCC-TS---HHHHHHCHHC----TSEEEEESS--SHHHHHHHCCCH-SSEEEESHHHCC-CC
T ss_pred cCchhhcC-CcccchHHHHHHhhcc---cceeEEcCccCCHHHHHHHHHhcCCcEEEEchhhhhcCH
Confidence 87432221 2246799999999988 7999999999999999999986 9999999999887643
|
Dihydrouridine modification of tRNA is widely observed in prokaryotes and eukaryotes, and also in some archae. Most dihydrouridines are found in the D loop of t-RNAs. The role of dihydrouridine in tRNA is currently unknown, but may increase conformational flexibility of the tRNA. It is likely that different family members have different substrate specificities, which may overlap. Dus 1 (P53759 from SWISSPROT) from Saccharomyces cerevisiae (Baker's yeast) acts on pre-tRNA-Phe, while Dus 2 (P53720 from SWISSPROT) acts on pre-tRNA-Tyr and pre-tRNA-Leu. Dus 1 is active as a single subunit, requiring NADPH or NADH, and is stimulated by the presence of FAD []. Some family members may be targeted to the mitochondria and even have a role in mitochondria []. ; GO: 0017150 tRNA dihydrouridine synthase activity, 0050660 flavin adenine dinucleotide binding, 0008033 tRNA processing, 0055114 oxidation-reduction process; PDB: 1VHN_A 3B0P_A 3B0V_D 3B0U_Y. |
| >TIGR01163 rpe ribulose-phosphate 3-epimerase | Back alignment and domain information |
|---|
Probab=99.25 E-value=5.4e-10 Score=98.50 Aligned_cols=177 Identities=17% Similarity=0.158 Sum_probs=113.9
Q ss_pred cHHHHHHHHhCC--Cceeec-CCCC-CCHHHHHHHHHHHHhhcCCcEEEEeecCCCCHHHHHHHHhcCCcEEEEccCCC-
Q 020013 24 GPELVAAVANAG--GLGLLR-APDW-EAPDYLRDLIRKTRSLTERPFGVGVVLAFPHNENIKAILSEKVAVLQVSWGEY- 98 (332)
Q Consensus 24 ~~~la~avs~aG--glG~i~-~~~~-~~~e~~~~~i~~~r~~~~~p~gvnl~~~~~~~~~~~~~~~~~~~~I~~~~g~~- 98 (332)
..+.+.++.++| .+++.. .+.+ .+...--+.++++++.++.|+-+.+++..+ .++++.+.+.|++.|++|.+.+
T Consensus 13 ~~~~~~~~~~~g~d~i~~~~~Dg~~~~~~~~~~~~v~~i~~~~~~~v~v~lm~~~~-~~~~~~~~~~gadgv~vh~~~~~ 91 (210)
T TIGR01163 13 LGEEVKAVEEAGADWIHVDVMDGHFVPNLTFGPPVLEALRKYTDLPIDVHLMVENP-DRYIEDFAEAGADIITVHPEASE 91 (210)
T ss_pred HHHHHHHHHHcCCCEEEEcCCCCCCCCCcccCHHHHHHHHhcCCCcEEEEeeeCCH-HHHHHHHHHcCCCEEEEccCCch
Confidence 456677777777 355531 0001 011112244566665556677788888765 5778888999999999995431
Q ss_pred -cHHHHHHHHhCCCEEEEe--cCCHHHHHHHHHcCCCEEEEecCCCCcccCC-CCchhhhHHHHHHHhCC--CCCcEEee
Q 020013 99 -SEELVLEAHSAGVKVVPQ--VGSFDEARKAVNAGVDAIIVQGREAGGHVIG-QDGLISLLPMVVDLIGD--RDIPIIAA 172 (332)
Q Consensus 99 -~~~~i~~~~~~g~~v~~~--v~s~~~a~~a~~~g~D~ivv~G~eaGGh~~~-~~~~~~ll~~i~~~~~~--~~iPviaa 172 (332)
+...++.+++.|+.++.. .++..+..+.+..++|+|.+.+...|+.... ....+..+.++++...+ .++|++++
T Consensus 92 ~~~~~~~~~~~~g~~~~~~~~~~t~~e~~~~~~~~~d~i~~~~~~~g~tg~~~~~~~~~~i~~i~~~~~~~~~~~~i~v~ 171 (210)
T TIGR01163 92 HIHRLLQLIKDLGAKAGIVLNPATPLEFLEYVLPDVDLVLLMSVNPGFGGQKFIPDTLEKIREVRKMIDENGLSILIEVD 171 (210)
T ss_pred hHHHHHHHHHHcCCcEEEEECCCCCHHHHHHHHhhCCEEEEEEEcCCCCcccccHHHHHHHHHHHHHHHhcCCCceEEEE
Confidence 224556677778776554 4455666666667899988765544332101 12234555556554421 13799999
Q ss_pred cCcCCHHHHHHHHHcCcceeeeccccccCc
Q 020013 173 GGIVDARGYVAALSLGAQGICLGTRFVASE 202 (332)
Q Consensus 173 GGI~~~~~v~~al~~GA~gV~~GT~fl~t~ 202 (332)
||| +.+++.+++..|||++++||+++.++
T Consensus 172 GGI-~~env~~l~~~gad~iivgsai~~~~ 200 (210)
T TIGR01163 172 GGV-NDDNARELAEAGADILVAGSAIFGAD 200 (210)
T ss_pred CCc-CHHHHHHHHHcCCCEEEEChHHhCCC
Confidence 999 78999999999999999999998543
|
This family consists of Ribulose-phosphate 3-epimerase, also known as pentose-5-phosphate 3-epimerase (PPE). PPE converts D-ribulose 5-phosphate into D-xylulose 5-phosphate in Calvin's reductive pentose phosphate cycle. It has been found in a wide range of bacteria, archebacteria, fungi and plants. |
| >cd04741 DHOD_1A_like Dihydroorotate dehydrogenase (DHOD) class 1A FMN-binding domain | Back alignment and domain information |
|---|
Probab=99.24 E-value=6.6e-10 Score=103.19 Aligned_cols=186 Identities=18% Similarity=0.192 Sum_probs=116.7
Q ss_pred CccceecCCCCCCCCcHHHHHHHHhCCCceeecCCC--------------------------C--CCHHHHHHHHHHHHh
Q 020013 9 FEYGIVQAPLGPDISGPELVAAVANAGGLGLLRAPD--------------------------W--EAPDYLRDLIRKTRS 60 (332)
Q Consensus 9 ~~~Pii~apM~~g~s~~~la~avs~aGglG~i~~~~--------------------------~--~~~e~~~~~i~~~r~ 60 (332)
++.||+.|.=. .-.+.+....+..+ |+|++..++ + ...+...+.+++.+.
T Consensus 8 l~nPi~~Asg~-~~~~~e~~~~~~~~-G~Gavv~ktit~~~~~gn~~pr~~~~~~~~~N~~G~~n~g~~~~~~~i~~~~~ 85 (294)
T cd04741 8 ISPPLMNAAGP-WCTTLEDLLELAAS-STGAVTTRSSTLAGRPGNPEPRYYAFPLGSINSLGLPNLGLDYYLEYIRTISD 85 (294)
T ss_pred CCCCCEECCCC-CCCCHHHHHHHHHc-CCcEEEeCcccCCCCCCCCCCcEEecCccccccccCCCcCHHHHHHHHHHHhh
Confidence 67899977743 23677888877775 566663321 0 012333444444332
Q ss_pred h---cCCcEEEEeecCCCCHHHHH---HHHhc---CCcEEEEccCCCc-----------H---HHHHHHHhC-CCEEEEe
Q 020013 61 L---TERPFGVGVVLAFPHNENIK---AILSE---KVAVLQVSWGEYS-----------E---ELVLEAHSA-GVKVVPQ 116 (332)
Q Consensus 61 ~---~~~p~gvnl~~~~~~~~~~~---~~~~~---~~~~I~~~~g~~~-----------~---~~i~~~~~~-g~~v~~~ 116 (332)
. .+.|+.+++... + ++.++ .+.+. ++|+|.++.++|. + ++++.+++. .++|+.+
T Consensus 86 ~~~~~~~pvivsi~g~-~-~~~~~~~~~~~~~~~~~ad~ielN~sCPn~~~~~~~~~~~~~~~~i~~~v~~~~~iPv~vK 163 (294)
T cd04741 86 GLPGSAKPFFISVTGS-A-EDIAAMYKKIAAHQKQFPLAMELNLSCPNVPGKPPPAYDFDATLEYLTAVKAAYSIPVGVK 163 (294)
T ss_pred hccccCCeEEEECCCC-H-HHHHHHHHHHHhhccccccEEEEECCCCCCCCcccccCCHHHHHHHHHHHHHhcCCCEEEE
Confidence 2 468999999876 3 44433 33343 5899999877642 2 234445543 6888887
Q ss_pred cC---CHH----HHHHHHHc--CCCEEEEecCCC--------------------CcccCCCC---chhhhHHHHHHHhCC
Q 020013 117 VG---SFD----EARKAVNA--GVDAIIVQGREA--------------------GGHVIGQD---GLISLLPMVVDLIGD 164 (332)
Q Consensus 117 v~---s~~----~a~~a~~~--g~D~ivv~G~ea--------------------GGh~~~~~---~~~~ll~~i~~~~~~ 164 (332)
++ +.+ .+..+.+. |+|+|++.++-. ||.. |+. ..+..+.++++.++.
T Consensus 164 l~p~~~~~~~~~~a~~l~~~~~G~~gi~~~Nt~~~~~~id~~~~~~~~~~~~~~gG~S-G~~i~~~al~~v~~~~~~~~~ 242 (294)
T cd04741 164 TPPYTDPAQFDTLAEALNAFACPISFITATNTLGNGLVLDPERETVVLKPKTGFGGLA-GAYLHPLALGNVRTFRRLLPS 242 (294)
T ss_pred eCCCCCHHHHHHHHHHHhccccCCcEEEEEccCCccccccCCCCCcccCCCCCCCCcC-chhhHHHHHHHHHHHHHhcCC
Confidence 75 222 23334466 899999643321 1221 111 124555666666631
Q ss_pred CCCcEEeecCcCCHHHHHHHHHcCcceeeecccccc
Q 020013 165 RDIPIIAAGGIVDARGYVAALSLGAQGICLGTRFVA 200 (332)
Q Consensus 165 ~~iPviaaGGI~~~~~v~~al~~GA~gV~~GT~fl~ 200 (332)
++|||+.|||.+++|+.+++.+|||+||++|+++.
T Consensus 243 -~ipIig~GGI~s~~da~e~l~aGA~~Vqv~ta~~~ 277 (294)
T cd04741 243 -EIQIIGVGGVLDGRGAFRMRLAGASAVQVGTALGK 277 (294)
T ss_pred -CCCEEEeCCCCCHHHHHHHHHcCCCceeEchhhhh
Confidence 49999999999999999999999999999999986
|
DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively. |
| >PRK07695 transcriptional regulator TenI; Provisional | Back alignment and domain information |
|---|
Probab=99.24 E-value=3.7e-10 Score=99.14 Aligned_cols=157 Identities=18% Similarity=0.215 Sum_probs=108.4
Q ss_pred CCceeecCC-CCCCHHHHHHHHHHHHhhcCCcEEEEeecCCCCHHHHHHHHhcCCcEEEEccCCCcHHHHHHHHhCCCEE
Q 020013 35 GGLGLLRAP-DWEAPDYLRDLIRKTRSLTERPFGVGVVLAFPHNENIKAILSEKVAVLQVSWGEYSEELVLEAHSAGVKV 113 (332)
Q Consensus 35 GglG~i~~~-~~~~~e~~~~~i~~~r~~~~~p~gvnl~~~~~~~~~~~~~~~~~~~~I~~~~g~~~~~~i~~~~~~g~~v 113 (332)
+|+-.+... ...+.+.+.+.++++++... + +..++++ +..+.+.+.+++.++++..+.+.+.+++.. .+..+
T Consensus 26 ~g~~~iqlR~k~~~~~~~~~~~~~l~~~~~-~-~~~liin----~~~~la~~~~~~gvHl~~~~~~~~~~r~~~-~~~~i 98 (201)
T PRK07695 26 SEVDYIHIREREKSAKELYEGVESLLKKGV-P-ASKLIIN----DRVDIALLLNIHRVQLGYRSFSVRSVREKF-PYLHV 98 (201)
T ss_pred CCCCEEEEcCCCCCHHHHHHHHHHHHHhCC-C-CCeEEEE----CHHHHHHHcCCCEEEeCcccCCHHHHHHhC-CCCEE
Confidence 455666542 12356677777777775422 2 2345664 347788899999999986554433333221 36778
Q ss_pred EEecCCHHHHHHHHHcCCCEEEEec-CCCCcccCCCCchhhhHHHHHHHhCCCCCcEEeecCcCCHHHHHHHHHcCccee
Q 020013 114 VPQVGSFDEARKAVNAGVDAIIVQG-REAGGHVIGQDGLISLLPMVVDLIGDRDIPIIAAGGIVDARGYVAALSLGAQGI 192 (332)
Q Consensus 114 ~~~v~s~~~a~~a~~~g~D~ivv~G-~eaGGh~~~~~~~~~ll~~i~~~~~~~~iPviaaGGI~~~~~v~~al~~GA~gV 192 (332)
...+++.+++..+.+.|+|++++.. +....+.+.+...+..++++.+.+ ++||++.||| +++++.+++..||++|
T Consensus 99 g~s~~s~e~a~~a~~~Gadyi~~g~v~~t~~k~~~~~~g~~~l~~~~~~~---~ipvia~GGI-~~~~~~~~~~~Ga~gv 174 (201)
T PRK07695 99 GYSVHSLEEAIQAEKNGADYVVYGHVFPTDCKKGVPARGLEELSDIARAL---SIPVIAIGGI-TPENTRDVLAAGVSGI 174 (201)
T ss_pred EEeCCCHHHHHHHHHcCCCEEEECCCCCCCCCCCCCCCCHHHHHHHHHhC---CCCEEEEcCC-CHHHHHHHHHcCCCEE
Confidence 8899999999999999999997621 111112111122366777777765 7999999999 9999999999999999
Q ss_pred eeccccccCc
Q 020013 193 CLGTRFVASE 202 (332)
Q Consensus 193 ~~GT~fl~t~ 202 (332)
.+|+.++.+.
T Consensus 175 av~s~i~~~~ 184 (201)
T PRK07695 175 AVMSGIFSSA 184 (201)
T ss_pred EEEHHHhcCC
Confidence 9999998653
|
|
| >TIGR00262 trpA tryptophan synthase, alpha subunit | Back alignment and domain information |
|---|
Probab=99.23 E-value=9.7e-10 Score=99.88 Aligned_cols=152 Identities=20% Similarity=0.211 Sum_probs=102.2
Q ss_pred CHHHHHHHHHHHHhh-cCCcEEEEeecCCC-----CHHHHHHHHhcCCcEEEEccCCCc---HHHHHHHHhCCCEEEEec
Q 020013 47 APDYLRDLIRKTRSL-TERPFGVGVVLAFP-----HNENIKAILSEKVAVLQVSWGEYS---EELVLEAHSAGVKVVPQV 117 (332)
Q Consensus 47 ~~e~~~~~i~~~r~~-~~~p~gvnl~~~~~-----~~~~~~~~~~~~~~~I~~~~g~~~---~~~i~~~~~~g~~v~~~v 117 (332)
+.+.+-+.++++|+. ++.|+- .+++.++ .+++++.+.++|++.+.++ ..+. .++++.+++.|+..+..+
T Consensus 70 ~~~~~~~~v~~ir~~~~~~plv-~m~Y~Npi~~~G~e~f~~~~~~aGvdgviip-Dlp~ee~~~~~~~~~~~gl~~i~lv 147 (256)
T TIGR00262 70 TPEKCFELLKKVRQKHPNIPIG-LLTYYNLIFRKGVEEFYAKCKEVGVDGVLVA-DLPLEESGDLVEAAKKHGVKPIFLV 147 (256)
T ss_pred CHHHHHHHHHHHHhcCCCCCEE-EEEeccHHhhhhHHHHHHHHHHcCCCEEEEC-CCChHHHHHHHHHHHHCCCcEEEEE
Confidence 445566777788754 567865 5554443 2677889999999999998 3333 356677888898755333
Q ss_pred ---CCHHHHHHHHHcCCCEEEEecCC-CCcccC-CCCchhhhHHHHHHHhCCCCCcEEeecCcCCHHHHHHHHHcCccee
Q 020013 118 ---GSFDEARKAVNAGVDAIIVQGRE-AGGHVI-GQDGLISLLPMVVDLIGDRDIPIIAAGGIVDARGYVAALSLGAQGI 192 (332)
Q Consensus 118 ---~s~~~a~~a~~~g~D~ivv~G~e-aGGh~~-~~~~~~~ll~~i~~~~~~~~iPviaaGGI~~~~~v~~al~~GA~gV 192 (332)
++.+..+...+..-++|.+-... .+|... -......++.++++.. +.||++.|||++++++.+++.+|||||
T Consensus 148 ~P~T~~eri~~i~~~~~gfiy~vs~~G~TG~~~~~~~~~~~~i~~lr~~~---~~pi~vgfGI~~~e~~~~~~~~GADgv 224 (256)
T TIGR00262 148 APNADDERLKQIAEKSQGFVYLVSRAGVTGARNRAASALNELVKRLKAYS---AKPVLVGFGISKPEQVKQAIDAGADGV 224 (256)
T ss_pred CCCCCHHHHHHHHHhCCCCEEEEECCCCCCCcccCChhHHHHHHHHHhhc---CCCEEEeCCCCCHHHHHHHHHcCCCEE
Confidence 34555555444432244443322 223210 1124577788887765 689999999999999999999999999
Q ss_pred eeccccccCcc
Q 020013 193 CLGTRFVASEE 203 (332)
Q Consensus 193 ~~GT~fl~t~E 203 (332)
++||+++..-|
T Consensus 225 VvGSaiv~~~~ 235 (256)
T TIGR00262 225 IVGSAIVKIIE 235 (256)
T ss_pred EECHHHHHHHH
Confidence 99999986443
|
Tryptophan synthase catalyzes the last step in the biosynthesis of tryptophan. The alpha chain is responsible for the aldol cleavage of indoleglycerol phosphate to indole and glyceraldehyde 3-phosphate. In bacteria and plants each domain is found on a separate subunit (alpha and beta chains), while in fungi the two domains are fused together on a single multifunctional protein. The signature pattern for trpA contains three conserved acidic residues. [LIVM]-E-[LIVM]-G-x(2)-[FYC]-[ST]-[DE]-[PA]-[LIVMY]-[AGLI]-[DE]-G and this is located between residues 43-58 of the model. The Sulfolobus solfataricus trpA is known to be quite divergent from other known trpA sequences. |
| >PRK09427 bifunctional indole-3-glycerol phosphate synthase/phosphoribosylanthranilate isomerase; Provisional | Back alignment and domain information |
|---|
Probab=99.22 E-value=4.3e-10 Score=109.52 Aligned_cols=160 Identities=20% Similarity=0.240 Sum_probs=116.5
Q ss_pred CCCcHHHHHHHHhCC--Cceeec---CCCCCCHHHHHHHHHHHHhhcCCcEEEEeecCCCCHHHHHHHHhcCCcEEEEcc
Q 020013 21 DISGPELVAAVANAG--GLGLLR---APDWEAPDYLRDLIRKTRSLTERPFGVGVVLAFPHNENIKAILSEKVAVLQVSW 95 (332)
Q Consensus 21 g~s~~~la~avs~aG--glG~i~---~~~~~~~e~~~~~i~~~r~~~~~p~gvnl~~~~~~~~~~~~~~~~~~~~I~~~~ 95 (332)
|+++++.+.+++++| .+||+. ++++.+++..+++.+.+. .--|.++++.+.++..+.+.+.++|+|++|
T Consensus 263 Git~~eda~~a~~~GaD~lGfIf~~~SpR~V~~~~a~~i~~~l~-----v~~VgVfv~~~~~~i~~i~~~~~lD~vQLH- 336 (454)
T PRK09427 263 GLTRPQDAKAAYDAGAVYGGLIFVEKSPRYVSLEQAQEIIAAAP-----LRYVGVFRNADIEDIVDIAKQLSLAAVQLH- 336 (454)
T ss_pred CCCCHHHHHHHHhCCCCEEeeEeCCCCCCCCCHHHHHHHHHhCC-----CCEEEEEeCCCHHHHHHHHHHcCCCEEEeC-
Confidence 688999999999998 599985 345677888777766553 234778888775666677778899999999
Q ss_pred CCCcHHHHHHHHhC---CCEEEEecC--CHHHHHHHHHcCCCEEEEecCCCCcccCCCCchhhhHHHHHHHhCCCCCcEE
Q 020013 96 GEYSEELVLEAHSA---GVKVVPQVG--SFDEARKAVNAGVDAIIVQGREAGGHVIGQDGLISLLPMVVDLIGDRDIPII 170 (332)
Q Consensus 96 g~~~~~~i~~~~~~---g~~v~~~v~--s~~~a~~a~~~g~D~ivv~G~eaGGh~~~~~~~~~ll~~i~~~~~~~~iPvi 170 (332)
|..++++++.+++. ++++|..+. +... .....++|+++++. ..||. |....|.+++.. . ..|++
T Consensus 337 G~e~~~~~~~l~~~~~~~~~iikai~v~~~~~--~~~~~~~d~~LlDs-~~GGt--G~~~DW~~l~~~---~---~~p~i 405 (454)
T PRK09427 337 GDEDQAYIDALREALPKTCQIWKAISVGDTLP--ARDLQHVDRYLLDN-GQGGT--GQTFDWSLLPGQ---S---LDNVL 405 (454)
T ss_pred CCCCHHHHHHHHhhcCCCCeEEEEeecCchhh--hhhhcCCCEEEEcC-CCCCC--CCccChHHhhhc---c---cCCEE
Confidence 66678888888763 466775433 2222 12234689999985 33443 344557766532 2 46999
Q ss_pred eecCcCCHHHHHHHHHcCcceeeecccc
Q 020013 171 AAGGIVDARGYVAALSLGAQGICLGTRF 198 (332)
Q Consensus 171 aaGGI~~~~~v~~al~~GA~gV~~GT~f 198 (332)
.|||| +++|+.+++..+..||-+-|.+
T Consensus 406 LAGGL-~peNV~~ai~~~P~gVDVsSGV 432 (454)
T PRK09427 406 LAGGL-NPDNCQQAAQLGCAGLDFNSGV 432 (454)
T ss_pred EECCC-CHHHHHHHHhcCCCEEEeCCcc
Confidence 99999 8999999999999999998876
|
|
| >cd04738 DHOD_2_like Dihydroorotate dehydrogenase (DHOD) class 2 | Back alignment and domain information |
|---|
Probab=99.22 E-value=3.2e-10 Score=106.84 Aligned_cols=188 Identities=23% Similarity=0.279 Sum_probs=120.5
Q ss_pred CccceecCCCCCCCCcHHHHHHHHhCCCceeecCCCC--------C------CH-------------HHHHHHHHHHHhh
Q 020013 9 FEYGIVQAPLGPDISGPELVAAVANAGGLGLLRAPDW--------E------AP-------------DYLRDLIRKTRSL 61 (332)
Q Consensus 9 ~~~Pii~apM~~g~s~~~la~avs~aGglG~i~~~~~--------~------~~-------------e~~~~~i~~~r~~ 61 (332)
++.||+.+.= ...+.+......++| +|++..++. . .+ ..++..++++++.
T Consensus 48 l~nPi~~AsG--~~~~~~~~~~~~~~G-~Gavv~ktit~~~~~gn~~pr~~~~~~~~~~~n~~g~~n~g~~~~~~~l~~~ 124 (327)
T cd04738 48 FPNPVGLAAG--FDKNAEAIDALLALG-FGFVEVGTVTPRPQPGNPKPRLFRLPEDEALINRMGFNNDGADAVAKRLKKR 124 (327)
T ss_pred CCCCCEeCcC--CCCCHHHHHHHHHCC-CcEEEEeccCCCCCCCCCCCCEEEccCccceeecCCCCCccHHHHHHHHHHh
Confidence 6679987652 234667777776654 455432110 0 00 0123344444432
Q ss_pred --cCCcEEEEeecCCC------CHHHHHHHHhc--CCcEEEEccCCCcH-------------HHHHHHHhC-C-----CE
Q 020013 62 --TERPFGVGVVLAFP------HNENIKAILSE--KVAVLQVSWGEYSE-------------ELVLEAHSA-G-----VK 112 (332)
Q Consensus 62 --~~~p~gvnl~~~~~------~~~~~~~~~~~--~~~~I~~~~g~~~~-------------~~i~~~~~~-g-----~~ 112 (332)
.+.|+++|+..+.. .+++.+.+.+. .+|++.+++++|.. ++++.+++. . ++
T Consensus 125 ~~~~~plivsi~g~~~~~~~~~~~d~~~~~~~~~~~ad~ielN~scP~~~g~~~~~~~~~~~~iv~av~~~~~~~~~~~P 204 (327)
T cd04738 125 RPRGGPLGVNIGKNKDTPLEDAVEDYVIGVRKLGPYADYLVVNVSSPNTPGLRDLQGKEALRELLTAVKEERNKLGKKVP 204 (327)
T ss_pred ccCCCeEEEEEeCCCCCcccccHHHHHHHHHHHHhhCCEEEEECCCCCCCccccccCHHHHHHHHHHHHHHHhhcccCCC
Confidence 36899999987642 13444444333 48999998876521 445555542 2 78
Q ss_pred EEEecC---C----HHHHHHHHHcCCCEEEEecCC--------------CCcccCCCC---chhhhHHHHHHHhCCCCCc
Q 020013 113 VVPQVG---S----FDEARKAVNAGVDAIIVQGRE--------------AGGHVIGQD---GLISLLPMVVDLIGDRDIP 168 (332)
Q Consensus 113 v~~~v~---s----~~~a~~a~~~g~D~ivv~G~e--------------aGGh~~~~~---~~~~ll~~i~~~~~~~~iP 168 (332)
++.+++ + .+.++.+.++|+|+|++.+.- .||.. ++. ..+..+.++++.+.. ++|
T Consensus 205 v~vKl~~~~~~~~~~~ia~~l~~aGad~I~~~n~~~~~~~~~~~~~~~~~gG~s-G~~~~~~~l~~v~~l~~~~~~-~ip 282 (327)
T cd04738 205 LLVKIAPDLSDEELEDIADVALEHGVDGIIATNTTISRPGLLRSPLANETGGLS-GAPLKERSTEVLRELYKLTGG-KIP 282 (327)
T ss_pred eEEEeCCCCCHHHHHHHHHHHHHcCCcEEEEECCcccccccccccccCCCCccC-ChhhhHHHHHHHHHHHHHhCC-CCc
Confidence 887775 2 233456778999999987741 23443 221 236777888877642 599
Q ss_pred EEeecCcCCHHHHHHHHHcCcceeeeccccccC
Q 020013 169 IIAAGGIVDARGYVAALSLGAQGICLGTRFVAS 201 (332)
Q Consensus 169 viaaGGI~~~~~v~~al~~GA~gV~~GT~fl~t 201 (332)
|++.|||.|++++.+++.+|||+|++||+++..
T Consensus 283 Ii~~GGI~t~~da~e~l~aGAd~V~vg~~~~~~ 315 (327)
T cd04738 283 IIGVGGISSGEDAYEKIRAGASLVQLYTGLVYE 315 (327)
T ss_pred EEEECCCCCHHHHHHHHHcCCCHHhccHHHHhh
Confidence 999999999999999999999999999999854
|
DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences, their cellular location and their natural electron acceptor used to reoxidize the flavin group. Members of class 1 are cytosolic enzymes and multimers, while class 2 enzymes are membrane associated, monomeric and use respiratory quinones as their physiological electron acceptors. |
| >PF00697 PRAI: N-(5'phosphoribosyl)anthranilate (PRA) isomerase; InterPro: IPR001240 Indole-3-glycerol phosphate synthase (IGPS) (see IPR001468 from INTERPRO) catalyzes the fourth step in the biosynthesis of tryptophan, the ring closure of 1-(2-carboxy-phenylamino)-1-deoxyribulose into indol-3-glycerol-phosphate | Back alignment and domain information |
|---|
Probab=99.22 E-value=5.4e-11 Score=104.10 Aligned_cols=166 Identities=25% Similarity=0.382 Sum_probs=104.4
Q ss_pred CCCcHHHHHHHHhCCC--ceeecCC---CCCCHHHHHHHHHHHHhhcCCcEEEEeecCCCCHHHHHHHHhcCCcEEEEcc
Q 020013 21 DISGPELVAAVANAGG--LGLLRAP---DWEAPDYLRDLIRKTRSLTERPFGVGVVLAFPHNENIKAILSEKVAVLQVSW 95 (332)
Q Consensus 21 g~s~~~la~avs~aGg--lG~i~~~---~~~~~e~~~~~i~~~r~~~~~p~gvnl~~~~~~~~~~~~~~~~~~~~I~~~~ 95 (332)
|+++++.+..++++|. +||+..+ ++.+++.++++.+.+ . |.-|+++.+.+.++.++.+.+.++|+|++|
T Consensus 5 Gi~~~~da~~~~~~g~d~~Gfi~~~~S~R~v~~~~a~~l~~~~----~-~~~VgVf~~~~~~~I~~~~~~~~ld~vQLH- 78 (197)
T PF00697_consen 5 GITRPEDARLAAELGADYLGFIFYPKSPRYVSPDQARELVSAV----P-PKIVGVFVNQSPEEILEIVEELGLDVVQLH- 78 (197)
T ss_dssp ---SHHHHHHHHHHTSSEEEEE--TTCTTB--HHHHHHHHCCS----S-SSEEEEESSS-HHHHHHHHHHCTESEEEE--
T ss_pred CCCcHHHHHHHHHcCCCEEeeecCCCCCCccCHHHHHHHHHhc----C-CCEEEEEcCCCHHHHHHHHHHcCCCEEEEC-
Confidence 5789999999999986 9999754 334555544443332 2 347888998876777888888999999999
Q ss_pred CCCcHHHHHHHHhCCCEEEEec--C-CHHHHHHHHHc-CCCEEEEecCCCCcccCCCCchhhhHHHHHHHhCCCCCcEEe
Q 020013 96 GEYSEELVLEAHSAGVKVVPQV--G-SFDEARKAVNA-GVDAIIVQGREAGGHVIGQDGLISLLPMVVDLIGDRDIPIIA 171 (332)
Q Consensus 96 g~~~~~~i~~~~~~g~~v~~~v--~-s~~~a~~a~~~-g~D~ivv~G~eaGGh~~~~~~~~~ll~~i~~~~~~~~iPvia 171 (332)
|..+.++++.++ .+.+++..+ . +.+....+... .+|++++++ ..||. |....|.+++.+.+... +.|++.
T Consensus 79 G~e~~e~~~~l~-~~~~vi~~~~v~~~~~~~~~~~~~~~~d~~LlD~-~~Ggt--G~~~dw~~~~~~~~~~~--~~p~iL 152 (197)
T PF00697_consen 79 GDESPEYIKLLR-AGLPVIKAIHVDKDIDLLDYLERYESVDYFLLDS-GSGGT--GKTFDWSLLKKIVESYS--PKPVIL 152 (197)
T ss_dssp SGG-HHHHHHHH-TTSEEEEEEEESSCHSCCHHCHCSTT-SEEEEES-SSTSS--SS---GGGGCCCHHT-G--TSTEEE
T ss_pred CCCCHHHHHHhh-cCceEEEEEEeCCccchHHHHHhcccccEEeEcc-CCCcC--CcccCHHHhhhhhhhcc--cCcEEE
Confidence 666778888877 466666432 2 22222222222 239999993 33443 34456888877766322 589999
Q ss_pred ecCcCCHHHHHHHHH-cCcceeeeccccc
Q 020013 172 AGGIVDARGYVAALS-LGAQGICLGTRFV 199 (332)
Q Consensus 172 aGGI~~~~~v~~al~-~GA~gV~~GT~fl 199 (332)
|||| +++|+.+++. .+..||-+-|.+=
T Consensus 153 AGGl-~p~NV~~ai~~~~p~gvDvsSGvE 180 (197)
T PF00697_consen 153 AGGL-NPENVREAIRQVRPYGVDVSSGVE 180 (197)
T ss_dssp ESS---TTTHHHHHHHC--SEEEESGGGE
T ss_pred EcCC-ChHHHHHHHHhcCceEEEeCCccc
Confidence 9999 8999999999 8999999988753
|
In some bacteria, IGPS is a single chain enzyme. In others, such as Escherichia coli, it is the N-terminal domain of a bifunctional enzyme that also catalyzes N-(5-phosphoribosyl)anthranilate isomerase (PRAI) activity, the third step of tryptophan biosynthesis. In fungi, IGPS is the central domain of a trifunctional enzyme that contains a PRAI C-terminal domain and a glutamine amidotransferase (GATase) N-terminal domain (see IPR000991 from INTERPRO). Phosphoribosylanthranilate isomerase (PRAI) is monomeric and labile in most mesophilic microorganisms, but dimeric and stable in the hyperthermophile Thermotoga maritima (tPRAI) []. The comparison to the known 2.0 A structure of PRAI from Escherichia coli (ePRAI) shows that tPRAI has the complete TIM- or (beta alp ha)8-barrel fold, whereas helix alpha5 in ePRAI is replaced by a loop. The subunits of tPRAI associate via the N-terminal faces of their central beta-barrels. Two long, symmetry-related loops that protrude reciprocally into cavities of the other subunit provide for multiple hydrophobic interactions. Moreover, the side chains of the N-terminal methionines and the C-terminal leucines of both subunits are immobilized in a hydrophobic cluster, and the number of salt bridges is increased in tPRAI. These features appear to be mainly responsible for the high thermostability of tPRAI []. ; GO: 0004640 phosphoribosylanthranilate isomerase activity, 0006568 tryptophan metabolic process; PDB: 1V5X_A 1PII_A 1JCM_P 2KZH_A 1LBM_A 1DL3_A 1NSJ_A. |
| >cd00429 RPE Ribulose-5-phosphate 3-epimerase (RPE) | Back alignment and domain information |
|---|
Probab=99.21 E-value=6.7e-10 Score=97.84 Aligned_cols=148 Identities=16% Similarity=0.192 Sum_probs=101.8
Q ss_pred HHHHHHHhhcCCcEEEEeecCCCCHHHHHHHHhcCCcEEEEccCC--CcHHHHHHHHhCCCEEEEecC--CHHHHHHHHH
Q 020013 53 DLIRKTRSLTERPFGVGVVLAFPHNENIKAILSEKVAVLQVSWGE--YSEELVLEAHSAGVKVVPQVG--SFDEARKAVN 128 (332)
Q Consensus 53 ~~i~~~r~~~~~p~gvnl~~~~~~~~~~~~~~~~~~~~I~~~~g~--~~~~~i~~~~~~g~~v~~~v~--s~~~a~~a~~ 128 (332)
+.++++++.++.|+.+.++++++ .+.++.+.+.|+|.|++|.+. .+.+.++.+++.++.++..++ +..+..+...
T Consensus 47 ~~~~~i~~~~~~~~~v~l~~~d~-~~~~~~~~~~g~dgv~vh~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~ 125 (211)
T cd00429 47 PVVKALRKHTDLPLDVHLMVENP-ERYIEAFAKAGADIITFHAEATDHLHRTIQLIKELGMKAGVALNPGTPVEVLEPYL 125 (211)
T ss_pred HHHHHHHhhCCCcEEEEeeeCCH-HHHHHHHHHcCCCEEEECccchhhHHHHHHHHHHCCCeEEEEecCCCCHHHHHHHH
Confidence 45566665556788899998755 567888899999999998543 223566777788988887764 2333334444
Q ss_pred cCCCEEEEecCCCCcccC-CCCchhhhHHHHHHHhC--CCCCcEEeecCcCCHHHHHHHHHcCcceeeeccccccCc
Q 020013 129 AGVDAIIVQGREAGGHVI-GQDGLISLLPMVVDLIG--DRDIPIIAAGGIVDARGYVAALSLGAQGICLGTRFVASE 202 (332)
Q Consensus 129 ~g~D~ivv~G~eaGGh~~-~~~~~~~ll~~i~~~~~--~~~iPviaaGGI~~~~~v~~al~~GA~gV~~GT~fl~t~ 202 (332)
.++|++.+.+...|+... .....+..+.++++... ..++||+++||| +.+++.+++..|||+|++||+++..+
T Consensus 126 ~~~d~i~~~~~~~g~tg~~~~~~~~~~i~~~~~~~~~~~~~~pi~v~GGI-~~env~~~~~~gad~iivgsai~~~~ 201 (211)
T cd00429 126 DEVDLVLVMSVNPGFGGQKFIPEVLEKIRKLRELIPENNLNLLIEVDGGI-NLETIPLLAEAGADVLVAGSALFGSD 201 (211)
T ss_pred hhCCEEEEEEECCCCCCcccCHHHHHHHHHHHHHHHhcCCCeEEEEECCC-CHHHHHHHHHcCCCEEEECHHHhCCC
Confidence 559999886654333210 11123445555555441 013899999999 67999999999999999999998653
|
This enzyme catalyses the interconversion of D-ribulose 5-phosphate (Ru5P) into D-xylulose 5-phosphate, as part of the Calvin cycle (reductive pentose phosphate pathway) in chloroplasts and in the oxidative pentose phosphate pathway. In the Calvin cycle Ru5P is phosphorylated by phosphoribulose kinase to ribulose-1,5-bisphosphate, which in turn is used by RubisCO (ribulose-1,5-bisphosphate carboxylase/oxygenase) to incorporate CO2 as the central step in carbohydrate synthesis. |
| >PLN02591 tryptophan synthase | Back alignment and domain information |
|---|
Probab=99.20 E-value=9.5e-10 Score=99.22 Aligned_cols=153 Identities=18% Similarity=0.199 Sum_probs=103.1
Q ss_pred CHHHHHHHHHHHHhhcCCcEEE----EeecCCCCHHHHHHHHhcCCcEEEEccCCCcH---HHHHHHHhCCCEEEEecC-
Q 020013 47 APDYLRDLIRKTRSLTERPFGV----GVVLAFPHNENIKAILSEKVAVLQVSWGEYSE---ELVLEAHSAGVKVVPQVG- 118 (332)
Q Consensus 47 ~~e~~~~~i~~~r~~~~~p~gv----nl~~~~~~~~~~~~~~~~~~~~I~~~~g~~~~---~~i~~~~~~g~~v~~~v~- 118 (332)
+.+.+-++++++|+..+.|+.+ |.+.....+++++.+.+.|++.+.+. +.+++ ++.+.+++.|+..+..++
T Consensus 62 ~~~~~~~~~~~~r~~~~~p~ilm~Y~N~i~~~G~~~F~~~~~~aGv~Gviip-DLP~ee~~~~~~~~~~~gl~~I~lv~P 140 (250)
T PLN02591 62 TLDSVISMLKEVAPQLSCPIVLFTYYNPILKRGIDKFMATIKEAGVHGLVVP-DLPLEETEALRAEAAKNGIELVLLTTP 140 (250)
T ss_pred CHHHHHHHHHHHhcCCCCCEEEEecccHHHHhHHHHHHHHHHHcCCCEEEeC-CCCHHHHHHHHHHHHHcCCeEEEEeCC
Confidence 4455667777777655667542 33222234678899999999999987 44433 466777889998776652
Q ss_pred --CHHHHHHHHHcCCCEEEEecC-CCCcccCC-CCchhhhHHHHHHHhCCCCCcEEeecCcCCHHHHHHHHHcCcceeee
Q 020013 119 --SFDEARKAVNAGVDAIIVQGR-EAGGHVIG-QDGLISLLPMVVDLIGDRDIPIIAAGGIVDARGYVAALSLGAQGICL 194 (332)
Q Consensus 119 --s~~~a~~a~~~g~D~ivv~G~-eaGGh~~~-~~~~~~ll~~i~~~~~~~~iPviaaGGI~~~~~v~~al~~GA~gV~~ 194 (332)
+.+..+...+..-++|-+.+. ...|.... +.....++..+++.. ++||+...||++++++.+++..|||||++
T Consensus 141 tt~~~ri~~ia~~~~gFIY~Vs~~GvTG~~~~~~~~~~~~i~~vk~~~---~~Pv~vGFGI~~~e~v~~~~~~GADGvIV 217 (250)
T PLN02591 141 TTPTERMKAIAEASEGFVYLVSSTGVTGARASVSGRVESLLQELKEVT---DKPVAVGFGISKPEHAKQIAGWGADGVIV 217 (250)
T ss_pred CCCHHHHHHHHHhCCCcEEEeeCCCCcCCCcCCchhHHHHHHHHHhcC---CCceEEeCCCCCHHHHHHHHhcCCCEEEE
Confidence 234455555555566655442 12232212 223455566777654 89999999999999999999999999999
Q ss_pred ccccccCcc
Q 020013 195 GTRFVASEE 203 (332)
Q Consensus 195 GT~fl~t~E 203 (332)
||+|+..-+
T Consensus 218 GSalVk~i~ 226 (250)
T PLN02591 218 GSAMVKALG 226 (250)
T ss_pred CHHHHHhhh
Confidence 999986443
|
|
| >TIGR00259 thylakoid_BtpA membrane complex biogenesis protein, BtpA family | Back alignment and domain information |
|---|
Probab=99.20 E-value=1.3e-09 Score=98.10 Aligned_cols=139 Identities=21% Similarity=0.373 Sum_probs=100.3
Q ss_pred HHHHHHHHHhhcCCcEEEEeecCCCCHHHHHHHHhcCCcEEEEc---------cCC---CcHHHHHHHHh--CCCEEEEe
Q 020013 51 LRDLIRKTRSLTERPFGVGVVLAFPHNENIKAILSEKVAVLQVS---------WGE---YSEELVLEAHS--AGVKVVPQ 116 (332)
Q Consensus 51 ~~~~i~~~r~~~~~p~gvnl~~~~~~~~~~~~~~~~~~~~I~~~---------~g~---~~~~~i~~~~~--~g~~v~~~ 116 (332)
+...+.+++.....|+|||++-+.+ ...+.++...++++|-.. .|. ...++.+.-+. ..++++..
T Consensus 67 m~~i~~~v~~~~~~p~GvnvL~nd~-~aal~iA~a~ga~FIRv~~~~g~~~~d~G~~~~~a~e~~r~r~~l~~~v~i~ad 145 (257)
T TIGR00259 67 MAVIAGQLKSDVSIPLGINVLRNDA-VAALAIAMAVGAKFIRVNVLTGVYASDQGIIEGNAGELIRYKKLLGSEVKILAD 145 (257)
T ss_pred HHHHHHHHHHhcCCCeeeeeecCCC-HHHHHHHHHhCCCEEEEccEeeeEecccccccccHHHHHHHHHHcCCCcEEEec
Confidence 4455566777777899999998766 567888999999998652 121 12233333322 46788765
Q ss_pred cC----------CHHH-HHHHHHcC-CCEEEEecCCCCcccCCCCchhhhHHHHHHHhCCCCCcEEeecCcCCHHHHHHH
Q 020013 117 VG----------SFDE-ARKAVNAG-VDAIIVQGREAGGHVIGQDGLISLLPMVVDLIGDRDIPIIAAGGIVDARGYVAA 184 (332)
Q Consensus 117 v~----------s~~~-a~~a~~~g-~D~ivv~G~eaGGh~~~~~~~~~ll~~i~~~~~~~~iPviaaGGI~~~~~v~~a 184 (332)
+. ++++ ++.+...+ +|+|++.|... |....+..+.++++... ++||+.+||| +++|+.++
T Consensus 146 V~~kh~~~l~~~~~~e~a~~~~~~~~aDavivtG~~T-----G~~~d~~~l~~vr~~~~--~~PvllggGv-t~eNv~e~ 217 (257)
T TIGR00259 146 IVVKHAVHLGNRDLESIALDTVERGLADAVILSGKTT-----GTEVDLELLKLAKETVK--DTPVLAGSGV-NLENVEEL 217 (257)
T ss_pred eeecccCcCCCCCHHHHHHHHHHhcCCCEEEECcCCC-----CCCCCHHHHHHHHhccC--CCeEEEECCC-CHHHHHHH
Confidence 42 4444 55556555 99999987633 33456888888877553 6899999999 89999999
Q ss_pred HHcCcceeeeccccc
Q 020013 185 LSLGAQGICLGTRFV 199 (332)
Q Consensus 185 l~~GA~gV~~GT~fl 199 (332)
+.. |||+.+||.|=
T Consensus 218 l~~-adGviVgS~~K 231 (257)
T TIGR00259 218 LSI-ADGVIVATTIK 231 (257)
T ss_pred Hhh-CCEEEECCCcc
Confidence 998 99999999976
|
Members of this family are found in C. elegans, Synechocystis sp., E. coli, and several of the Archaea. Members in Cyanobacteria have been shown to play a role in protein complex biogenesis, and designated BtpA (biogenesis of thylakoid protein). Homologs in non-photosynthetic species, where thylakoid intracytoplasmic membranes are lacking, are likely to act elsewhere in membrane protein biogenesis. |
| >PRK03512 thiamine-phosphate pyrophosphorylase; Provisional | Back alignment and domain information |
|---|
Probab=99.20 E-value=1e-09 Score=96.96 Aligned_cols=168 Identities=13% Similarity=0.143 Sum_probs=112.1
Q ss_pred HHHHHHHhCCCceeecCCC-CCCHHHHHHHHHHHHhhcCCcEEEEeecCCCCHHHHHHHHhcCCcEEEEccCCCcHHHHH
Q 020013 26 ELVAAVANAGGLGLLRAPD-WEAPDYLRDLIRKTRSLTERPFGVGVVLAFPHNENIKAILSEKVAVLQVSWGEYSEELVL 104 (332)
Q Consensus 26 ~la~avs~aGglG~i~~~~-~~~~e~~~~~i~~~r~~~~~p~gvnl~~~~~~~~~~~~~~~~~~~~I~~~~g~~~~~~i~ 104 (332)
+.+..+.++| +..+.... ..+.+.+.+...+++.... .+++.++++ +.++.+.+.+++.|+++..+.+....+
T Consensus 23 ~~l~~~l~~G-~~~vqLR~k~~~~~~~~~la~~l~~~~~-~~~~~liIn----d~~~lA~~~~adGVHlg~~d~~~~~~r 96 (211)
T PRK03512 23 QWIERLLDAG-VRTLQLRIKDRRDEEVEADVVAAIALGR-RYQARLFIN----DYWRLAIKHQAYGVHLGQEDLETADLN 96 (211)
T ss_pred HHHHHHHhCC-CCEEEEcCCCCCHHHHHHHHHHHHHHHH-HhCCeEEEe----CHHHHHHHcCCCEEEcChHhCCHHHHH
Confidence 4555555555 56665421 1345556666666554432 245666664 457888889999999975444433444
Q ss_pred HHHhCCCEEEEecCCHHHHHHHHHcCCCEEEEecC-CCCcccC-CCCchhhhHHHHHHHhCCCCCcEEeecCcCCHHHHH
Q 020013 105 EAHSAGVKVVPQVGSFDEARKAVNAGVDAIIVQGR-EAGGHVI-GQDGLISLLPMVVDLIGDRDIPIIAAGGIVDARGYV 182 (332)
Q Consensus 105 ~~~~~g~~v~~~v~s~~~a~~a~~~g~D~ivv~G~-eaGGh~~-~~~~~~~ll~~i~~~~~~~~iPviaaGGI~~~~~v~ 182 (332)
.+...+..+...+++.+++..+.+.|+||+.+... ..-.|.+ .+...+..+.++.+... ++||++-||| +.+|+.
T Consensus 97 ~~~~~~~~iG~S~H~~~e~~~A~~~gaDYi~lgpvf~T~tK~~~~~~~G~~~l~~~~~~~~--~~PV~AiGGI-~~~ni~ 173 (211)
T PRK03512 97 AIRAAGLRLGVSTHDDMEIDVALAARPSYIALGHVFPTQTKQMPSAPQGLAQLARHVERLA--DYPTVAIGGI-SLERAP 173 (211)
T ss_pred HhcCCCCEEEEeCCCHHHHHHHhhcCCCEEEECCccCCCCCCCCCCCCCHHHHHHHHHhcC--CCCEEEECCC-CHHHHH
Confidence 44344667788999999999999999999998332 1112221 11122445566555421 6999999999 899999
Q ss_pred HHHHcCcceeeeccccccCc
Q 020013 183 AALSLGAQGICLGTRFVASE 202 (332)
Q Consensus 183 ~al~~GA~gV~~GT~fl~t~ 202 (332)
+++..||+||.+-+.++.++
T Consensus 174 ~l~~~Ga~GiAvisai~~~~ 193 (211)
T PRK03512 174 AVLATGVGSIAVVSAITQAA 193 (211)
T ss_pred HHHHcCCCEEEEhhHhhCCC
Confidence 99999999999999999654
|
|
| >KOG0538 consensus Glycolate oxidase [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=99.20 E-value=1.7e-10 Score=103.85 Aligned_cols=111 Identities=32% Similarity=0.383 Sum_probs=92.3
Q ss_pred HHHHHhC--CCEEEEecCCHHHHHHHHHcCCCEEEEecCCCCccc-CCCCchhhhHHHHHHHhCCCCCcEEeecCcCCHH
Q 020013 103 VLEAHSA--GVKVVPQVGSFDEARKAVNAGVDAIIVQGREAGGHV-IGQDGLISLLPMVVDLIGDRDIPIIAAGGIVDAR 179 (332)
Q Consensus 103 i~~~~~~--g~~v~~~v~s~~~a~~a~~~g~D~ivv~G~eaGGh~-~~~~~~~~ll~~i~~~~~~~~iPviaaGGI~~~~ 179 (332)
++.++.. ...|+..+-+.++|+.|.+.|+++|+|.+. ||.. +....++..+|++++++.+ ++||+..|||.++.
T Consensus 215 i~wLr~~T~LPIvvKGilt~eDA~~Ave~G~~GIIVSNH--GgRQlD~vpAtI~~L~Evv~aV~~-ri~V~lDGGVR~G~ 291 (363)
T KOG0538|consen 215 IKWLRSITKLPIVVKGVLTGEDARKAVEAGVAGIIVSNH--GGRQLDYVPATIEALPEVVKAVEG-RIPVFLDGGVRRGT 291 (363)
T ss_pred hHHHHhcCcCCeEEEeecccHHHHHHHHhCCceEEEeCC--CccccCcccchHHHHHHHHHHhcC-ceEEEEecCcccch
Confidence 3444442 345567788999999999999999999887 4533 3345779999999999975 79999999999999
Q ss_pred HHHHHHHcCcceeeeccccccCccCCCCHHHHHHHhc
Q 020013 180 GYVAALSLGAQGICLGTRFVASEESYAHPEYKRKLVE 216 (332)
Q Consensus 180 ~v~~al~~GA~gV~~GT~fl~t~Es~~~~~~k~~~~~ 216 (332)
|+.+||++||.+|.+|..++..--|......++.|.=
T Consensus 292 DVlKALALGAk~VfiGRP~v~gLA~~Ge~GV~~vl~i 328 (363)
T KOG0538|consen 292 DVLKALALGAKGVFIGRPIVWGLAAKGEAGVKKVLDI 328 (363)
T ss_pred HHHHHHhcccceEEecCchheeeccccchhHHHHHHH
Confidence 9999999999999999999999888888888777653
|
|
| >PLN02363 phosphoribosylanthranilate isomerase | Back alignment and domain information |
|---|
Probab=99.19 E-value=1.1e-09 Score=99.09 Aligned_cols=167 Identities=18% Similarity=0.167 Sum_probs=113.5
Q ss_pred CCCcHHHHHHHHhCC--CceeecC---CCCCCHHHHHHHHHHHHhhcCCcEEEEeecCCCCHHHHHHHHhcCCcEEEEcc
Q 020013 21 DISGPELVAAVANAG--GLGLLRA---PDWEAPDYLRDLIRKTRSLTERPFGVGVVLAFPHNENIKAILSEKVAVLQVSW 95 (332)
Q Consensus 21 g~s~~~la~avs~aG--glG~i~~---~~~~~~e~~~~~i~~~r~~~~~p~gvnl~~~~~~~~~~~~~~~~~~~~I~~~~ 95 (332)
|+++++.+..++++| .+||+.. +++.+++..+++.+.++.. ...-|.++++.+.++..+.+.+.++|+|++|
T Consensus 53 Git~~eda~~a~~~GaD~iGfIf~~~SpR~Vs~e~a~~I~~~l~~~--~~~~VgVfv~~~~~~I~~~~~~~~ld~VQLH- 129 (256)
T PLN02363 53 GITSARDAAMAVEAGADFIGMILWPKSKRSISLSVAKEISQVAREG--GAKPVGVFVDDDANTILRAADSSDLELVQLH- 129 (256)
T ss_pred CCCcHHHHHHHHHcCCCEEEEecCCCCCCcCCHHHHHHHHHhcccc--CccEEEEEeCCCHHHHHHHHHhcCCCEEEEC-
Confidence 688999999999998 5999953 4567888887777765421 1124777887775666777778899999999
Q ss_pred CCCcHHHHHHHHhCCCEEEEec--CCHHH-HHHHH---HcCCCEEEEecCCCCcccCCCCchhhhHHHHHHHhCCCCCcE
Q 020013 96 GEYSEELVLEAHSAGVKVVPQV--GSFDE-ARKAV---NAGVDAIIVQGREAGGHVIGQDGLISLLPMVVDLIGDRDIPI 169 (332)
Q Consensus 96 g~~~~~~i~~~~~~g~~v~~~v--~s~~~-a~~a~---~~g~D~ivv~G~eaGGh~~~~~~~~~ll~~i~~~~~~~~iPv 169 (332)
|....++++.++. .+++|..+ .+..+ ..... ...+|+++++... ||. |....|..++.. . +. ...|+
T Consensus 130 G~e~~~~~~~l~~-~~~iikai~v~~~~~~~~~~~~~~~~~~D~~LlDs~~-GGt--G~t~DW~~l~~~-~-~~-~~~p~ 202 (256)
T PLN02363 130 GNGSRAAFSRLVR-ERKVIYVLNANEDGKLLNVVPEEDCHLADWILVDSAT-GGS--GKGFNWQNFKLP-S-VR-SRNGW 202 (256)
T ss_pred CCCCHHHHHHhhc-CCcEEEEEEECchHHHHHHHHhhccccCCEEEEeCCC-CCC--CCccCHHHhccc-c-cc-cCCCE
Confidence 5566777777764 35565433 22222 11121 2358999998643 443 333446555310 1 11 14699
Q ss_pred EeecCcCCHHHHHHHHH-cCcceeeecccc
Q 020013 170 IAAGGIVDARGYVAALS-LGAQGICLGTRF 198 (332)
Q Consensus 170 iaaGGI~~~~~v~~al~-~GA~gV~~GT~f 198 (332)
|.|||| +++|+.+++. .+..||-+-|.+
T Consensus 203 iLAGGL-~peNV~~ai~~~~P~GVDVsSGV 231 (256)
T PLN02363 203 LLAGGL-TPENVHEAVSLLKPTGVDVSSGI 231 (256)
T ss_pred EEECCC-CHHHHHHHHHhcCCcEEEeCCcc
Confidence 999999 8999999987 689999997776
|
|
| >PRK08005 epimerase; Validated | Back alignment and domain information |
|---|
Probab=99.19 E-value=1.1e-09 Score=96.10 Aligned_cols=141 Identities=14% Similarity=0.184 Sum_probs=106.8
Q ss_pred HHHHHHhhcCCcEEEEeecCCCCHHHHHHHHhcCCcEEEEccCC--CcHHHHHHHHhCCCEEEEecC---CHHHHHHHHH
Q 020013 54 LIRKTRSLTERPFGVGVVLAFPHNENIKAILSEKVAVLQVSWGE--YSEELVLEAHSAGVKVVPQVG---SFDEARKAVN 128 (332)
Q Consensus 54 ~i~~~r~~~~~p~gvnl~~~~~~~~~~~~~~~~~~~~I~~~~g~--~~~~~i~~~~~~g~~v~~~v~---s~~~a~~a~~ 128 (332)
.++.+|+.++.|+-|++++..| +.+++.+.+.|++.|.+|+.. .+.+.++.+|+.|++....+. +++.....+.
T Consensus 49 ~i~~l~~~t~~~~DvHLMv~~P-~~~i~~~~~~gad~It~H~Ea~~~~~~~l~~Ik~~G~k~GlAlnP~Tp~~~i~~~l~ 127 (210)
T PRK08005 49 TIQAVAQQTRHPLSFHLMVSSP-QRWLPWLAAIRPGWIFIHAESVQNPSEILADIRAIGAKAGLALNPATPLLPYRYLAL 127 (210)
T ss_pred HHHHHHhcCCCCeEEEeccCCH-HHHHHHHHHhCCCEEEEcccCccCHHHHHHHHHHcCCcEEEEECCCCCHHHHHHHHH
Confidence 4667777788999999999887 678999999999999999752 345788999999999775543 4455544433
Q ss_pred cCCCEEEEec--CCCCcccCCCCchhhhHHHHHHHhCCCCCcEEeecCcCCHHHHHHHHHcCcceeeecccccc
Q 020013 129 AGVDAIIVQG--REAGGHVIGQDGLISLLPMVVDLIGDRDIPIIAAGGIVDARGYVAALSLGAQGICLGTRFVA 200 (332)
Q Consensus 129 ~g~D~ivv~G--~eaGGh~~~~~~~~~ll~~i~~~~~~~~iPviaaGGI~~~~~v~~al~~GA~gV~~GT~fl~ 200 (332)
-+|.|.+-. +..||+. -....+..+.++++..+ +..+.+.||| +.+++..+.++|||.+++||+++.
T Consensus 128 -~vD~VlvMsV~PGf~GQ~-f~~~~~~KI~~l~~~~~--~~~I~VDGGI-~~~~i~~l~~aGad~~V~GsaiF~ 196 (210)
T PRK08005 128 -QLDALMIMTSEPDGRGQQ-FIAAMCEKVSQSREHFP--AAECWADGGI-TLRAARLLAAAGAQHLVIGRALFT 196 (210)
T ss_pred -hcCEEEEEEecCCCccce-ecHHHHHHHHHHHHhcc--cCCEEEECCC-CHHHHHHHHHCCCCEEEEChHhhC
Confidence 689998843 4445554 22345666666666553 3469999999 899999999999999999999774
|
|
| >PRK08745 ribulose-phosphate 3-epimerase; Provisional | Back alignment and domain information |
|---|
Probab=99.18 E-value=1.2e-09 Score=96.87 Aligned_cols=144 Identities=14% Similarity=0.165 Sum_probs=107.1
Q ss_pred HHHHHHhh-cCCcEEEEeecCCCCHHHHHHHHhcCCcEEEEccCC--CcHHHHHHHHhCCCEEEEecC---CHHHHHHHH
Q 020013 54 LIRKTRSL-TERPFGVGVVLAFPHNENIKAILSEKVAVLQVSWGE--YSEELVLEAHSAGVKVVPQVG---SFDEARKAV 127 (332)
Q Consensus 54 ~i~~~r~~-~~~p~gvnl~~~~~~~~~~~~~~~~~~~~I~~~~g~--~~~~~i~~~~~~g~~v~~~v~---s~~~a~~a~ 127 (332)
.++.+|+. ++.|+-|++++..| +.+++.+.+.|++.|.+|+.. .+.+.++.+|+.|++....+. +++.....+
T Consensus 52 ~i~~lr~~~~~~~~dvHLMv~~P-~~~i~~~~~~gad~I~~H~Ea~~~~~~~l~~Ir~~g~k~GlalnP~T~~~~i~~~l 130 (223)
T PRK08745 52 VCQALRKHGITAPIDVHLMVEPV-DRIVPDFADAGATTISFHPEASRHVHRTIQLIKSHGCQAGLVLNPATPVDILDWVL 130 (223)
T ss_pred HHHHHHhhCCCCCEEEEeccCCH-HHHHHHHHHhCCCEEEEcccCcccHHHHHHHHHHCCCceeEEeCCCCCHHHHHHHH
Confidence 46777777 68999999999877 678999999999999999752 245788999999998765442 344444443
Q ss_pred HcCCCEEEEe--cCCCCcccCCCCchhhhHHHHHHHhCC--CCCcEEeecCcCCHHHHHHHHHcCcceeeeccccccC
Q 020013 128 NAGVDAIIVQ--GREAGGHVIGQDGLISLLPMVVDLIGD--RDIPIIAAGGIVDARGYVAALSLGAQGICLGTRFVAS 201 (332)
Q Consensus 128 ~~g~D~ivv~--G~eaGGh~~~~~~~~~ll~~i~~~~~~--~~iPviaaGGI~~~~~v~~al~~GA~gV~~GT~fl~t 201 (332)
.-+|.|++- .+..||+. -....+..+.++++..++ .++.|-++||| +.+++..+.++|||.+++||++...
T Consensus 131 -~~vD~VlvMtV~PGf~GQ~-fi~~~l~KI~~l~~~~~~~~~~~~IeVDGGI-~~eti~~l~~aGaDi~V~GSaiF~~ 205 (223)
T PRK08745 131 -PELDLVLVMSVNPGFGGQA-FIPSALDKLRAIRKKIDALGKPIRLEIDGGV-KADNIGAIAAAGADTFVAGSAIFNA 205 (223)
T ss_pred -hhcCEEEEEEECCCCCCcc-ccHHHHHHHHHHHHHHHhcCCCeeEEEECCC-CHHHHHHHHHcCCCEEEEChhhhCC
Confidence 368999884 44445554 223456666666655432 24669999999 8999999999999999999997653
|
|
| >CHL00200 trpA tryptophan synthase alpha subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.16 E-value=1.9e-09 Score=98.04 Aligned_cols=152 Identities=18% Similarity=0.190 Sum_probs=98.8
Q ss_pred HHHHHHHHHHHHhhcCCcEEE----EeecCCCCHHHHHHHHhcCCcEEEEccCCCcH---HHHHHHHhCCCEEEEecC--
Q 020013 48 PDYLRDLIRKTRSLTERPFGV----GVVLAFPHNENIKAILSEKVAVLQVSWGEYSE---ELVLEAHSAGVKVVPQVG-- 118 (332)
Q Consensus 48 ~e~~~~~i~~~r~~~~~p~gv----nl~~~~~~~~~~~~~~~~~~~~I~~~~g~~~~---~~i~~~~~~g~~v~~~v~-- 118 (332)
.+.+-+.++++|+..+.|+.+ |.+.....+++++.+.+.|+|.+.++ ..+++ ++.+.+++.|+..+..++
T Consensus 76 ~~~~~~~~~~~r~~~~~p~vlm~Y~N~i~~~G~e~F~~~~~~aGvdgviip-DLP~ee~~~~~~~~~~~gi~~I~lv~Pt 154 (263)
T CHL00200 76 LNKILSILSEVNGEIKAPIVIFTYYNPVLHYGINKFIKKISQAGVKGLIIP-DLPYEESDYLISVCNLYNIELILLIAPT 154 (263)
T ss_pred HHHHHHHHHHHhcCCCCCEEEEecccHHHHhCHHHHHHHHHHcCCeEEEec-CCCHHHHHHHHHHHHHcCCCEEEEECCC
Confidence 344556667777555667532 33222234678999999999999998 44333 456778888987765443
Q ss_pred C-HHHHHHHHHcCCCEEEEe-cCCCCcccCC-CCchhhhHHHHHHHhCCCCCcEEeecCcCCHHHHHHHHHcCcceeeec
Q 020013 119 S-FDEARKAVNAGVDAIIVQ-GREAGGHVIG-QDGLISLLPMVVDLIGDRDIPIIAAGGIVDARGYVAALSLGAQGICLG 195 (332)
Q Consensus 119 s-~~~a~~a~~~g~D~ivv~-G~eaGGh~~~-~~~~~~ll~~i~~~~~~~~iPviaaGGI~~~~~v~~al~~GA~gV~~G 195 (332)
| .+..+...+..-.+|.+. -...+|.... ......++..+++.. +.|+...+||++++++.++...|||||++|
T Consensus 155 T~~eri~~i~~~a~gFIY~vS~~GvTG~~~~~~~~~~~~i~~ir~~t---~~Pi~vGFGI~~~e~~~~~~~~GADGvVVG 231 (263)
T CHL00200 155 SSKSRIQKIARAAPGCIYLVSTTGVTGLKTELDKKLKKLIETIKKMT---NKPIILGFGISTSEQIKQIKGWNINGIVIG 231 (263)
T ss_pred CCHHHHHHHHHhCCCcEEEEcCCCCCCCCccccHHHHHHHHHHHHhc---CCCEEEECCcCCHHHHHHHHhcCCCEEEEC
Confidence 4 444444444433355442 2333443211 122355566666644 799999999999999999999999999999
Q ss_pred cccccCcc
Q 020013 196 TRFVASEE 203 (332)
Q Consensus 196 T~fl~t~E 203 (332)
|+|+..-+
T Consensus 232 Salv~~i~ 239 (263)
T CHL00200 232 SACVQILL 239 (263)
T ss_pred HHHHHHHH
Confidence 99975433
|
|
| >PRK04180 pyridoxal biosynthesis lyase PdxS; Provisional | Back alignment and domain information |
|---|
Probab=99.16 E-value=1e-09 Score=99.08 Aligned_cols=173 Identities=20% Similarity=0.263 Sum_probs=122.2
Q ss_pred CCCcHHHHHHHHhCCCceeecCC-------------CCCCHHHHHHHHHHHHhhcCCcEEEEeecCCCCHHHHHHHHhcC
Q 020013 21 DISGPELVAAVANAGGLGLLRAP-------------DWEAPDYLRDLIRKTRSLTERPFGVGVVLAFPHNENIKAILSEK 87 (332)
Q Consensus 21 g~s~~~la~avs~aGglG~i~~~-------------~~~~~e~~~~~i~~~r~~~~~p~gvnl~~~~~~~~~~~~~~~~~ 87 (332)
-+++++-+.-...+|...+.... +..+|+. |+++++.++.|+-.-.-. .+....+.+.+.|
T Consensus 23 dv~~~~~a~iae~~g~~~v~~~~~~psd~~~~gg~~Rm~~p~~----I~aIk~~V~iPVigk~Ri--gh~~Ea~~L~~~G 96 (293)
T PRK04180 23 DVVNAEQAKIAEEAGAVAVMALERVPADIRAAGGVARMADPKM----IEEIMDAVSIPVMAKARI--GHFVEAQILEALG 96 (293)
T ss_pred EeCCHHHHHHHHHhChHHHHHccCCCchHhhcCCeeecCCHHH----HHHHHHhCCCCeEEeehh--hHHHHHHHHHHcC
Confidence 37889888877778865544321 1234554 446666667886542211 1234567788899
Q ss_pred CcEEEEccC-CCcHHHHHHHHh-CCCEEEEecCCHHHHHHHHHcCCCEEEEecCCCCccc-----------------CC-
Q 020013 88 VAVLQVSWG-EYSEELVLEAHS-AGVKVVPQVGSFDEARKAVNAGVDAIIVQGREAGGHV-----------------IG- 147 (332)
Q Consensus 88 ~~~I~~~~g-~~~~~~i~~~~~-~g~~v~~~v~s~~~a~~a~~~g~D~ivv~G~eaGGh~-----------------~~- 147 (332)
+|+|.-+-= .|..+++...|. .++++++.+.+.+|+.++.+.|+|.|--.|--+.|.. .+
T Consensus 97 vDiID~Te~lrpad~~~~~~K~~f~~~fmad~~~l~EAlrai~~GadmI~Ttge~gtg~v~~av~h~r~~~~~i~~L~gy 176 (293)
T PRK04180 97 VDYIDESEVLTPADEEYHIDKWDFTVPFVCGARNLGEALRRIAEGAAMIRTKGEAGTGNVVEAVRHMRQINGEIRRLTSM 176 (293)
T ss_pred CCEEeccCCCCchHHHHHHHHHHcCCCEEccCCCHHHHHHHHHCCCCeeeccCCCCCccHHHHHHHHHHHHHHHHHHhCC
Confidence 999964311 123356666665 4899999999999999999999999977654222210 00
Q ss_pred -----------CCchhhhHHHHHHHhCCCCCcEE--eecCcCCHHHHHHHHHcCcceeeeccccccCc
Q 020013 148 -----------QDGLISLLPMVVDLIGDRDIPII--AAGGIVDARGYVAALSLGAQGICLGTRFVASE 202 (332)
Q Consensus 148 -----------~~~~~~ll~~i~~~~~~~~iPvi--aaGGI~~~~~v~~al~~GA~gV~~GT~fl~t~ 202 (332)
....+.+|.++++.. ++||+ +.|||.+++++..++.+||++|.+||+++.+.
T Consensus 177 t~~~~~~~a~~~~~~~elL~ei~~~~---~iPVV~~AeGGI~TPedaa~vme~GAdgVaVGSaI~ks~ 241 (293)
T PRK04180 177 SEDELYTAAKELQAPYELVKEVAELG---RLPVVNFAAGGIATPADAALMMQLGADGVFVGSGIFKSG 241 (293)
T ss_pred CHHHHHhhccccCCCHHHHHHHHHhC---CCCEEEEEeCCCCCHHHHHHHHHhCCCEEEEcHHhhcCC
Confidence 113577888888866 79998 99999999999999999999999999999654
|
|
| >PRK12290 thiE thiamine-phosphate pyrophosphorylase; Reviewed | Back alignment and domain information |
|---|
Probab=99.15 E-value=1.5e-09 Score=103.93 Aligned_cols=170 Identities=14% Similarity=0.178 Sum_probs=117.9
Q ss_pred HHHHHHHhCCCceeecCCC-CCCHHHHHHHHHHHHhhcCCcEEEEeecCCCCHHHHHHHHhcCCcEEEEccCCCcHHHHH
Q 020013 26 ELVAAVANAGGLGLLRAPD-WEAPDYLRDLIRKTRSLTERPFGVGVVLAFPHNENIKAILSEKVAVLQVSWGEYSEELVL 104 (332)
Q Consensus 26 ~la~avs~aGglG~i~~~~-~~~~e~~~~~i~~~r~~~~~p~gvnl~~~~~~~~~~~~~~~~~~~~I~~~~g~~~~~~i~ 104 (332)
+.+..+.++ |+..+.... ..+.+++.+.+++++++++ .+++.+++| +.++.+++.+++.|+++..+.+....+
T Consensus 221 ~~ve~aL~a-Gv~~VQLReK~ls~~el~~la~~l~~l~~-~~gv~LiIN----D~~dlAl~~gAdGVHLGQeDL~~~~aR 294 (437)
T PRK12290 221 EWIERLLPL-GINTVQLRIKDPQQADLEQQIIRAIALGR-EYNAQVFIN----DYWQLAIKHQAYGVHLGQEDLEEANLA 294 (437)
T ss_pred HHHHHHHhC-CCCEEEEeCCCCCHHHHHHHHHHHHHHHH-HhCCEEEEE----CHHHHHHHcCCCEEEcChHHcchhhhh
Confidence 455555554 456665421 1345567777777776654 356777774 468899999999999986544444455
Q ss_pred HHHhCCCEEEEecCCHHHHHHHHHcCCCEEEEecC-CCCcccC-CCCchhhhHHHHHHHhC------CCCCcEEeecCcC
Q 020013 105 EAHSAGVKVVPQVGSFDEARKAVNAGVDAIIVQGR-EAGGHVI-GQDGLISLLPMVVDLIG------DRDIPIIAAGGIV 176 (332)
Q Consensus 105 ~~~~~g~~v~~~v~s~~~a~~a~~~g~D~ivv~G~-eaGGh~~-~~~~~~~ll~~i~~~~~------~~~iPviaaGGI~ 176 (332)
.+...+..+...+++.+|+.++.+.|+|||.+-.. ....|.. .+.-.+..+.++++.+. ..++||++.|||
T Consensus 295 ~ilg~~~iIGvStHs~eEl~~A~~~gaDYI~lGPIFpT~TK~~~~~p~Gl~~L~~~~~l~~~~~~~~~~~iPVVAIGGI- 373 (437)
T PRK12290 295 QLTDAGIRLGLSTHGYYELLRIVQIQPSYIALGHIFPTTTKQMPSKPQGLVRLALYQKLIDTIPYQGQTGFPTVAIGGI- 373 (437)
T ss_pred hhcCCCCEEEEecCCHHHHHHHhhcCCCEEEECCccCCCCCCCCCCCCCHHHHHHHHHHhhhccccccCCCCEEEECCc-
Confidence 55556788889999999999999999999998221 1111210 11122555655555432 126999999999
Q ss_pred CHHHHHHHHHcCcceeeeccccccCc
Q 020013 177 DARGYVAALSLGAQGICLGTRFVASE 202 (332)
Q Consensus 177 ~~~~v~~al~~GA~gV~~GT~fl~t~ 202 (332)
+.+|+.++++.||+||.+-|+++.++
T Consensus 374 ~~~Ni~~vl~aGa~GVAVVSAI~~A~ 399 (437)
T PRK12290 374 DQSNAEQVWQCGVSSLAVVRAITLAE 399 (437)
T ss_pred CHHHHHHHHHcCCCEEEEehHhhcCC
Confidence 89999999999999999999998654
|
|
| >PRK09722 allulose-6-phosphate 3-epimerase; Provisional | Back alignment and domain information |
|---|
Probab=99.14 E-value=2.1e-09 Score=95.65 Aligned_cols=144 Identities=16% Similarity=0.222 Sum_probs=106.2
Q ss_pred HHHHHHhhcCCcEEEEeecCCCCHHHHHHHHhcCCcEEEEccCC---CcHHHHHHHHhCCCEEEEecC---CHHHHHHHH
Q 020013 54 LIRKTRSLTERPFGVGVVLAFPHNENIKAILSEKVAVLQVSWGE---YSEELVLEAHSAGVKVVPQVG---SFDEARKAV 127 (332)
Q Consensus 54 ~i~~~r~~~~~p~gvnl~~~~~~~~~~~~~~~~~~~~I~~~~g~---~~~~~i~~~~~~g~~v~~~v~---s~~~a~~a~ 127 (332)
.++.+|+.++.|+-|++++..| +.+++.+.++|++.|.+|+.. .+.+.++.+|+.|++....+. +++.....+
T Consensus 50 ~i~~ir~~t~~~~DvHLMv~~P-~~~i~~~~~aGad~it~H~Ea~~~~~~~~i~~Ik~~G~kaGlalnP~T~~~~l~~~l 128 (229)
T PRK09722 50 FVSQVKKLASKPLDVHLMVTDP-QDYIDQLADAGADFITLHPETINGQAFRLIDEIRRAGMKVGLVLNPETPVESIKYYI 128 (229)
T ss_pred HHHHHHhcCCCCeEEEEEecCH-HHHHHHHHHcCCCEEEECccCCcchHHHHHHHHHHcCCCEEEEeCCCCCHHHHHHHH
Confidence 4667777788999999999887 678999999999999999762 355788999999998765442 444444444
Q ss_pred HcCCCEEEEec--CCCCcccCCCCchhhhHHHHHHHhCC--CCCcEEeecCcCCHHHHHHHHHcCcceeeeccccccC
Q 020013 128 NAGVDAIIVQG--REAGGHVIGQDGLISLLPMVVDLIGD--RDIPIIAAGGIVDARGYVAALSLGAQGICLGTRFVAS 201 (332)
Q Consensus 128 ~~g~D~ivv~G--~eaGGh~~~~~~~~~ll~~i~~~~~~--~~iPviaaGGI~~~~~v~~al~~GA~gV~~GT~fl~t 201 (332)
. -+|.|.+-. +..||+. -....+..+.++++..++ .++-+.+.||| +.+++..+.++|||.+++||..++.
T Consensus 129 ~-~vD~VLvMsV~PGf~GQ~-fi~~~l~KI~~lr~~~~~~~~~~~IeVDGGI-~~~~i~~~~~aGad~~V~Gss~iF~ 203 (229)
T PRK09722 129 H-LLDKITVMTVDPGFAGQP-FIPEMLDKIAELKALRERNGLEYLIEVDGSC-NQKTYEKLMEAGADVFIVGTSGLFN 203 (229)
T ss_pred H-hcCEEEEEEEcCCCcchh-ccHHHHHHHHHHHHHHHhcCCCeEEEEECCC-CHHHHHHHHHcCCCEEEEChHHHcC
Confidence 4 589998843 4445544 223456666666655432 24669999999 7899999999999999999764443
|
|
| >PRK13111 trpA tryptophan synthase subunit alpha; Provisional | Back alignment and domain information |
|---|
Probab=99.14 E-value=2.8e-09 Score=96.78 Aligned_cols=152 Identities=18% Similarity=0.212 Sum_probs=102.8
Q ss_pred HHHHHHHHHHHH-hhcCCcEEE----EeecCCCCHHHHHHHHhcCCcEEEEccCCCcH---HHHHHHHhCCCEEEEecC-
Q 020013 48 PDYLRDLIRKTR-SLTERPFGV----GVVLAFPHNENIKAILSEKVAVLQVSWGEYSE---ELVLEAHSAGVKVVPQVG- 118 (332)
Q Consensus 48 ~e~~~~~i~~~r-~~~~~p~gv----nl~~~~~~~~~~~~~~~~~~~~I~~~~g~~~~---~~i~~~~~~g~~v~~~v~- 118 (332)
.+.+-+.++++| ...+.|+.+ |.+.....+++++.+.+.|++.+.+. +.+++ ++.+.+++.|+..+.-|+
T Consensus 73 ~~~~~~~~~~~r~~~~~~p~vlm~Y~N~i~~~G~e~f~~~~~~aGvdGviip-DLp~ee~~~~~~~~~~~gl~~I~lvap 151 (258)
T PRK13111 73 LADVFELVREIREKDPTIPIVLMTYYNPIFQYGVERFAADAAEAGVDGLIIP-DLPPEEAEELRAAAKKHGLDLIFLVAP 151 (258)
T ss_pred HHHHHHHHHHHHhcCCCCCEEEEecccHHhhcCHHHHHHHHHHcCCcEEEEC-CCCHHHHHHHHHHHHHcCCcEEEEeCC
Confidence 344556677777 334567643 33332234678999999999999997 44443 456667788987765432
Q ss_pred -C-HHHHHHHHHcCCCEEEEecC-CCCcccCC-CCchhhhHHHHHHHhCCCCCcEEeecCcCCHHHHHHHHHcCcceeee
Q 020013 119 -S-FDEARKAVNAGVDAIIVQGR-EAGGHVIG-QDGLISLLPMVVDLIGDRDIPIIAAGGIVDARGYVAALSLGAQGICL 194 (332)
Q Consensus 119 -s-~~~a~~a~~~g~D~ivv~G~-eaGGh~~~-~~~~~~ll~~i~~~~~~~~iPviaaGGI~~~~~v~~al~~GA~gV~~ 194 (332)
+ .+.++...+...++|-+.+. ...|.... +.....++..+++.. ++||++.+||++++++.+++.. ||||++
T Consensus 152 ~t~~eri~~i~~~s~gfIY~vs~~GvTG~~~~~~~~~~~~i~~vk~~~---~~pv~vGfGI~~~e~v~~~~~~-ADGviV 227 (258)
T PRK13111 152 TTTDERLKKIASHASGFVYYVSRAGVTGARSADAADLAELVARLKAHT---DLPVAVGFGISTPEQAAAIAAV-ADGVIV 227 (258)
T ss_pred CCCHHHHHHHHHhCCCcEEEEeCCCCCCcccCCCccHHHHHHHHHhcC---CCcEEEEcccCCHHHHHHHHHh-CCEEEE
Confidence 3 45666666666676655333 11232211 223456778887765 7999999999999999999986 999999
Q ss_pred ccccccCccC
Q 020013 195 GTRFVASEES 204 (332)
Q Consensus 195 GT~fl~t~Es 204 (332)
||+|+...|.
T Consensus 228 GSaiv~~~~~ 237 (258)
T PRK13111 228 GSALVKIIEE 237 (258)
T ss_pred cHHHHHHHHh
Confidence 9999877653
|
|
| >PRK05581 ribulose-phosphate 3-epimerase; Validated | Back alignment and domain information |
|---|
Probab=99.12 E-value=3.2e-09 Score=94.31 Aligned_cols=150 Identities=17% Similarity=0.212 Sum_probs=100.3
Q ss_pred HHHHHHHHhhcCCcEEEEeecCCCCHHHHHHHHhcCCcEEEEccCCC--cHHHHHHHHhCCCEEEEecC--CHHHHHHHH
Q 020013 52 RDLIRKTRSLTERPFGVGVVLAFPHNENIKAILSEKVAVLQVSWGEY--SEELVLEAHSAGVKVVPQVG--SFDEARKAV 127 (332)
Q Consensus 52 ~~~i~~~r~~~~~p~gvnl~~~~~~~~~~~~~~~~~~~~I~~~~g~~--~~~~i~~~~~~g~~v~~~v~--s~~~a~~a~ 127 (332)
.+.++++++.++.++.+.++++.+ .++++.+.+.+++.|++|.+.+ +.+.++.+++.|+.++..++ +..+..+.+
T Consensus 50 ~~~~~~i~~~~~~~~~v~l~v~d~-~~~i~~~~~~g~d~v~vh~~~~~~~~~~~~~~~~~~~~~g~~~~~~t~~e~~~~~ 128 (220)
T PRK05581 50 PPVVEAIRKVTKLPLDVHLMVENP-DRYVPDFAKAGADIITFHVEASEHIHRLLQLIKSAGIKAGLVLNPATPLEPLEDV 128 (220)
T ss_pred HHHHHHHHhcCCCcEEEEeeeCCH-HHHHHHHHHcCCCEEEEeeccchhHHHHHHHHHHcCCEEEEEECCCCCHHHHHHH
Confidence 345666666544678899998765 5577888899999999996532 23456677788998887773 444444555
Q ss_pred HcCCCEEEEecCCCCcccC-CCCchhhhHHHHHHHhCCCC--CcEEeecCcCCHHHHHHHHHcCcceeeeccccccCcc
Q 020013 128 NAGVDAIIVQGREAGGHVI-GQDGLISLLPMVVDLIGDRD--IPIIAAGGIVDARGYVAALSLGAQGICLGTRFVASEE 203 (332)
Q Consensus 128 ~~g~D~ivv~G~eaGGh~~-~~~~~~~ll~~i~~~~~~~~--iPviaaGGI~~~~~v~~al~~GA~gV~~GT~fl~t~E 203 (332)
...+|+|.+.+...|+... .....+..+.++++.....+ .+|+++||| +.+++.+++..|+|+|++||+++..++
T Consensus 129 ~~~~d~i~~~~~~~g~tg~~~~~~~~~~i~~~~~~~~~~~~~~~i~v~GGI-~~~nv~~l~~~GaD~vvvgSai~~~~d 206 (220)
T PRK05581 129 LDLLDLVLLMSVNPGFGGQKFIPEVLEKIRELRKLIDERGLDILIEVDGGI-NADNIKECAEAGADVFVAGSAVFGAPD 206 (220)
T ss_pred HhhCCEEEEEEECCCCCcccccHHHHHHHHHHHHHHHhcCCCceEEEECCC-CHHHHHHHHHcCCCEEEEChhhhCCCC
Confidence 5679988875543333210 11122444555554432111 346789999 779999999999999999999996543
|
|
| >PF00218 IGPS: Indole-3-glycerol phosphate synthase; InterPro: IPR013798 Indole-3-glycerol phosphate synthase (4 | Back alignment and domain information |
|---|
Probab=99.12 E-value=2.6e-09 Score=96.34 Aligned_cols=170 Identities=21% Similarity=0.252 Sum_probs=113.2
Q ss_pred HHHHHHHHhCCC--ceeecCCCCCCHHHHHHHHHHHHhhcCCcEEEEeecCCCCHHHHHHHHhcCCcEEEEccCCCcH--
Q 020013 25 PELVAAVANAGG--LGLLRAPDWEAPDYLRDLIRKTRSLTERPFGVGVVLAFPHNENIKAILSEKVAVLQVSWGEYSE-- 100 (332)
Q Consensus 25 ~~la~avs~aGg--lG~i~~~~~~~~e~~~~~i~~~r~~~~~p~gvnl~~~~~~~~~~~~~~~~~~~~I~~~~g~~~~-- 100 (332)
.+++....++|. +.++.-+.|. ..--+.+..+++.++.|+--+=|+. ++.++..+...|+|+|.+.....+.
T Consensus 71 ~~~a~~y~~~GA~aiSVlTe~~~F--~Gs~~dL~~v~~~~~~PvL~KDFIi--d~~QI~eA~~~GADaVLLI~~~L~~~~ 146 (254)
T PF00218_consen 71 AEIAKAYEEAGAAAISVLTEPKFF--GGSLEDLRAVRKAVDLPVLRKDFII--DPYQIYEARAAGADAVLLIAAILSDDQ 146 (254)
T ss_dssp HHHHHHHHHTT-SEEEEE--SCCC--HHHHHHHHHHHHHSSS-EEEES-----SHHHHHHHHHTT-SEEEEEGGGSGHHH
T ss_pred HHHHHHHHhcCCCEEEEECCCCCC--CCCHHHHHHHHHHhCCCcccccCCC--CHHHHHHHHHcCCCEeehhHHhCCHHH
Confidence 456666666663 4444433222 1123446667777778876654443 3567888899999999886544333
Q ss_pred --HHHHHHHhCCCEEEEecCCHHHHHHHHHcCCCEEEEecCCCCcccCCCCchhhhHHHHHHHhCCCCCcEEeecCcCCH
Q 020013 101 --ELVLEAHSAGVKVVPQVGSFDEARKAVNAGVDAIIVQGREAGGHVIGQDGLISLLPMVVDLIGDRDIPIIAAGGIVDA 178 (332)
Q Consensus 101 --~~i~~~~~~g~~v~~~v~s~~~a~~a~~~g~D~ivv~G~eaGGh~~~~~~~~~ll~~i~~~~~~~~iPviaaGGI~~~ 178 (332)
++++..+..|+.++..|++.+|+..+.+.|++.|.+.++.-.... ..+....++...++. ++.+|+.+||.++
T Consensus 147 l~~l~~~a~~lGle~lVEVh~~~El~~al~~~a~iiGINnRdL~tf~----vd~~~~~~l~~~ip~-~~~~iseSGI~~~ 221 (254)
T PF00218_consen 147 LEELLELAHSLGLEALVEVHNEEELERALEAGADIIGINNRDLKTFE----VDLNRTEELAPLIPK-DVIVISESGIKTP 221 (254)
T ss_dssp HHHHHHHHHHTT-EEEEEESSHHHHHHHHHTT-SEEEEESBCTTTCC----BHTHHHHHHHCHSHT-TSEEEEESS-SSH
T ss_pred HHHHHHHHHHcCCCeEEEECCHHHHHHHHHcCCCEEEEeCccccCcc----cChHHHHHHHhhCcc-ceeEEeecCCCCH
Confidence 456667788999999999999999999999999999877543221 222333344443332 5889999999999
Q ss_pred HHHHHHHHcCcceeeeccccccCcc
Q 020013 179 RGYVAALSLGAQGICLGTRFVASEE 203 (332)
Q Consensus 179 ~~v~~al~~GA~gV~~GT~fl~t~E 203 (332)
+++..+..+|+|||.+|++||.++.
T Consensus 222 ~d~~~l~~~G~davLVGe~lm~~~d 246 (254)
T PF00218_consen 222 EDARRLARAGADAVLVGEALMRSPD 246 (254)
T ss_dssp HHHHHHCTTT-SEEEESHHHHTSSS
T ss_pred HHHHHHHHCCCCEEEECHHHhCCCC
Confidence 9999999999999999999998864
|
1.1.48 from EC) (IGPS) catalyses the fourth step in the biosynthesis of tryptophan, the ring closure of 1-(2-carboxy-phenylamino)-1-deoxyribulose into indol-3-glycerol-phosphate. In some bacteria, IGPS is a single chain enzyme. In others, such as Escherichia coli, it is the N-terminal domain of a bifunctional enzyme that also catalyses N-(5'-phosphoribosyl)anthranilate isomerase (5.3.1.24 from EC) (PRAI) activity (see IPR001240 from INTERPRO), the third step of tryptophan biosynthesis. In fungi, IGPS is the central domain of a trifunctional enzyme that contains a PRAI C-terminal domain and a glutamine amidotransferase (2.4.2 from EC) (GATase) N-terminal domain (see IPR000991 from INTERPRO). A structure of the IGPS domain of the bifunctional enzyme from the mesophilic bacterium E. coli (eIGPS) has been compared with the monomeric indole-3-glycerol phosphate synthase from the hyperthermophilic archaeon Sulfolobus solfataricus (sIGPS). Both are single-domain (beta/alpha)8 barrel proteins, with one (eIGPS) or two (sIGPS) additional helices inserted before the first beta strand []. ; GO: 0004425 indole-3-glycerol-phosphate synthase activity; PDB: 1VC4_A 1PII_A 1JCM_P 1I4N_B 1J5T_A 3TSM_B 4FB7_A 3QJA_A 1JUL_A 2C3Z_A .... |
| >PLN02495 oxidoreductase, acting on the CH-CH group of donors | Back alignment and domain information |
|---|
Probab=99.11 E-value=8.9e-09 Score=98.30 Aligned_cols=154 Identities=13% Similarity=0.159 Sum_probs=97.7
Q ss_pred HHHHHHHHHHHHhhc-CCcEEEEeecCCCC---HHHHHHHHhcCCcEEEEccCCCc--------------HHH----HHH
Q 020013 48 PDYLRDLIRKTRSLT-ERPFGVGVVLAFPH---NENIKAILSEKVAVLQVSWGEYS--------------EEL----VLE 105 (332)
Q Consensus 48 ~e~~~~~i~~~r~~~-~~p~gvnl~~~~~~---~~~~~~~~~~~~~~I~~~~g~~~--------------~~~----i~~ 105 (332)
.+...+++.++++.. +.|+-++++..... .+.++.+.+.++|++.+++++|. ++. ++.
T Consensus 97 ~~~~l~~i~~~k~~~~~~pvIaSi~~~~s~~~~~~~a~~~e~~GaD~iELNiSCPn~~~~r~~g~~~gq~~e~~~~i~~~ 176 (385)
T PLN02495 97 FETMLAEFKQLKEEYPDRILIASIMEEYNKDAWEEIIERVEETGVDALEINFSCPHGMPERKMGAAVGQDCDLLEEVCGW 176 (385)
T ss_pred HHHHHHHHHHHHhhCCCCcEEEEccCCCCHHHHHHHHHHHHhcCCCEEEEECCCCCCCCcCccchhhccCHHHHHHHHHH
Confidence 344444455555433 67999998662221 23455566678999998765421 122 344
Q ss_pred HHh-CCCEEEEecC----CH-HHHHHHHHcCCCEEEEecCCC-------------------CcccC--CC-Cc--hhhhH
Q 020013 106 AHS-AGVKVVPQVG----SF-DEARKAVNAGVDAIIVQGREA-------------------GGHVI--GQ-DG--LISLL 155 (332)
Q Consensus 106 ~~~-~g~~v~~~v~----s~-~~a~~a~~~g~D~ivv~G~ea-------------------GGh~~--~~-~~--~~~ll 155 (332)
+++ ..++++.+.+ ++ +-++.+.+.|+|+|++.++-. +++.+ |+ .. .+..+
T Consensus 177 Vk~~~~iPv~vKLsPn~t~i~~ia~aa~~~Gadgi~liNT~~~~~~ID~~t~~p~~~~~~~~~~GGlSG~alkpiAl~~v 256 (385)
T PLN02495 177 INAKATVPVWAKMTPNITDITQPARVALKSGCEGVAAINTIMSVMGINLDTLRPEPCVEGYSTPGGYSSKAVRPIALAKV 256 (385)
T ss_pred HHHhhcCceEEEeCCChhhHHHHHHHHHHhCCCEEEEecccCcccccccccCccccccCCCCCCCCccchhhhHHHHHHH
Confidence 454 3688887765 33 345567889999999855321 11110 11 11 12334
Q ss_pred HHHHHHhCC---CCCcEEeecCcCCHHHHHHHHHcCcceeeeccccccC
Q 020013 156 PMVVDLIGD---RDIPIIAAGGIVDARGYVAALSLGAQGICLGTRFVAS 201 (332)
Q Consensus 156 ~~i~~~~~~---~~iPviaaGGI~~~~~v~~al~~GA~gV~~GT~fl~t 201 (332)
.++++.+.. .++||++.|||.+++|+.+++.+||+.||++|+++..
T Consensus 257 ~~i~~~~~~~~~~~ipIiGvGGI~s~~Da~e~i~aGAs~VQv~Ta~~~~ 305 (385)
T PLN02495 257 MAIAKMMKSEFPEDRSLSGIGGVETGGDAAEFILLGADTVQVCTGVMMH 305 (385)
T ss_pred HHHHHHHhhhccCCCcEEEECCCCCHHHHHHHHHhCCCceeEeeeeeec
Confidence 445555421 1589999999999999999999999999999999964
|
|
| >PF03437 BtpA: BtpA family; InterPro: IPR005137 Photosystem I (PSI) is a large protein complex embedded within the photosynthetic thylakoid membrane | Back alignment and domain information |
|---|
Probab=99.10 E-value=1.2e-08 Score=91.86 Aligned_cols=154 Identities=25% Similarity=0.414 Sum_probs=106.5
Q ss_pred HHHHHHHHHhhcCCcEEEEeecCCCCHHHHHHHHhcCCcEEEEc---------cCC---CcHHHHHHHHh--CCCEEEEe
Q 020013 51 LRDLIRKTRSLTERPFGVGVVLAFPHNENIKAILSEKVAVLQVS---------WGE---YSEELVLEAHS--AGVKVVPQ 116 (332)
Q Consensus 51 ~~~~i~~~r~~~~~p~gvnl~~~~~~~~~~~~~~~~~~~~I~~~---------~g~---~~~~~i~~~~~--~g~~v~~~ 116 (332)
+.....++++..+.|+|||++.+.+ .+.+.++...++++|-.. .|. ...++.+.-+. +.++++..
T Consensus 68 M~~i~~~v~~~~~~p~GVnvL~nd~-~aalaiA~A~ga~FIRv~~~~g~~~~d~G~~~~~a~e~~r~R~~l~a~v~ilaD 146 (254)
T PF03437_consen 68 MARIAREVRREVSVPVGVNVLRNDP-KAALAIAAATGADFIRVNVFVGAYVTDEGIIEGCAGELLRYRKRLGADVKILAD 146 (254)
T ss_pred HHHHHHHHHHhCCCCEEeeeecCCC-HHHHHHHHHhCCCEEEecCEEceecccCccccccHHHHHHHHHHcCCCeEEEee
Confidence 4455666777678899999998766 567888999999998632 121 01233333222 34788866
Q ss_pred cC----------CHHHH-HHH-HHcCCCEEEEecCCCCcccCCCCchhhhHHHHHHHhCCCCCcEEeecCcCCHHHHHHH
Q 020013 117 VG----------SFDEA-RKA-VNAGVDAIIVQGREAGGHVIGQDGLISLLPMVVDLIGDRDIPIIAAGGIVDARGYVAA 184 (332)
Q Consensus 117 v~----------s~~~a-~~a-~~~g~D~ivv~G~eaGGh~~~~~~~~~ll~~i~~~~~~~~iPviaaGGI~~~~~v~~a 184 (332)
|. +.+++ +.+ ...++|+|++.|... |....+..+.++++.+ ++||++.+|+ |++|+.++
T Consensus 147 V~~kh~~~l~~~~~~~~~~~a~~~~~aDaviVtG~~T-----G~~~~~~~l~~vr~~~---~~PVlvGSGv-t~~Ni~~~ 217 (254)
T PF03437_consen 147 VHVKHSSPLATRDLEEAAKDAVERGGADAVIVTGKAT-----GEPPDPEKLKRVREAV---PVPVLVGSGV-TPENIAEY 217 (254)
T ss_pred echhhcccCCCCCHHHHHHHHHHhcCCCEEEECCccc-----CCCCCHHHHHHHHhcC---CCCEEEecCC-CHHHHHHH
Confidence 53 34443 344 567999999976643 3345678888888887 5999999999 99999999
Q ss_pred HHcCcceeeeccccccCc--cCCCCHHHHHHHh
Q 020013 185 LSLGAQGICLGTRFVASE--ESYAHPEYKRKLV 215 (332)
Q Consensus 185 l~~GA~gV~~GT~fl~t~--Es~~~~~~k~~~~ 215 (332)
|.. |||+.+||.|-..- +.+.++.--++++
T Consensus 218 l~~-ADG~IVGS~~K~~G~~~n~VD~~Rv~~fm 249 (254)
T PF03437_consen 218 LSY-ADGAIVGSYFKKDGKWENPVDPERVRRFM 249 (254)
T ss_pred HHh-CCEEEEeeeeeeCCEeCCcCCHHHHHHHH
Confidence 987 99999999987433 3344444433333
|
It consists of 11 subunits, ~100 chlorophyll a molecules, 2 phylloquinones, and 3 Fe4S4-clusters. The three dimensional structure of the PSI complex has been resolved at 2.5 A [], which allows the precise localisation of each cofactor. PSI together with photosystem II (PSII) catalyses the light-induced steps in oxygenic photosynthesis - a process found in cyanobacteria, eukaryotic algae (e.g. red algae, green algae) and higher plants. To date, three thylakoid proteins involved in the stable accumulation of PSI have been identified: BtpA [], Ycf3 [, ], and Ycf4 (IPR003359 from INTERPRO) []. Because translation of the psaA and psaB mRNAs encoding the two reaction centre polypeptides, of PSI and PSII respectively, is not affected in mutant strains lacking functional ycf3 and ycf4, the products of these two genes appear to act at a post-translational step of PSI biosynthesis. These gene products are therefore involved either in the stabilisation or in the assembly of the PSI complex. However, their exact roles remain unknown. The BtpA protein appears to act at the level of PSI stabilisation []. It is an extrinsic membrane protein located on the cytoplasmic side of the thylakoid membrane [, ]. Homologs of BtpA are found in the crenarchaeota and euryarchaeota, where their function remains unknown. The Ycf4 protein is firmly associated with the thylakoid membrane, presumably through a transmembrane domain []. Ycf4 co-fractionates with a protein complex larger than PSI upon sucrose density gradient centrifugation of solubilised thylakoids []. The Ycf3 protein is loosely associated with the thylakoid membrane and can be released from the membrane with sodium carbonate. This suggests that Ycf3 is not part of a stable complex and that it probably interacts transiently with its partners []. Ycf3 contains a number of tetratrico peptide repeats (TPR, IPR001440 from INTERPRO); TPR is a structural motif present in a wide range of proteins, which mediates protein-protein interactions. |
| >PRK08999 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.09 E-value=2.8e-09 Score=99.86 Aligned_cols=161 Identities=17% Similarity=0.163 Sum_probs=109.3
Q ss_pred HHHHHhCCCceeecCCC-CCCHHHHHHHHHHHHhhcCCcEEEEeecCCCCHHHHHHHHhcCCcEEEEccCCCcHHHHHHH
Q 020013 28 VAAVANAGGLGLLRAPD-WEAPDYLRDLIRKTRSLTERPFGVGVVLAFPHNENIKAILSEKVAVLQVSWGEYSEELVLEA 106 (332)
Q Consensus 28 a~avs~aGglG~i~~~~-~~~~e~~~~~i~~~r~~~~~p~gvnl~~~~~~~~~~~~~~~~~~~~I~~~~g~~~~~~i~~~ 106 (332)
+.+..+ +|+..+.... ..+.+.+.+.++++++.+. .+++.++++ +.++.+.+.++|.|++...+.+....+.
T Consensus 150 ~~~~l~-~g~~~vqlR~k~~~~~~~~~~~~~l~~~~~-~~~~~liin----d~~~la~~~~~~GvHl~~~d~~~~~~r~- 222 (312)
T PRK08999 150 LERALA-AGIRLIQLRAPQLPPAAYRALARAALGLCR-RAGAQLLLN----GDPELAEDLGADGVHLTSAQLAALAARP- 222 (312)
T ss_pred HHHHHH-CCCcEEEEeCCCCCHHHHHHHHHHHHHHHH-HhCCEEEEE----CcHHHHHhcCCCEEEcChhhcChHhhcc-
Confidence 334444 4566665421 1345566777777776543 245666664 4578889999999999854444322322
Q ss_pred HhCCCEEEEecCCHHHHHHHHHcCCCEEEEecC-CCCcccCCCCchhhhHHHHHHHhCCCCCcEEeecCcCCHHHHHHHH
Q 020013 107 HSAGVKVVPQVGSFDEARKAVNAGVDAIIVQGR-EAGGHVIGQDGLISLLPMVVDLIGDRDIPIIAAGGIVDARGYVAAL 185 (332)
Q Consensus 107 ~~~g~~v~~~v~s~~~a~~a~~~g~D~ivv~G~-eaGGh~~~~~~~~~ll~~i~~~~~~~~iPviaaGGI~~~~~v~~al 185 (332)
...+..+...+++.+++..+.+.|+|||.+... ....|...+...+..+.++++.. ++||+|-||| +.+++.+++
T Consensus 223 ~~~~~~ig~S~h~~~~~~~a~~~~~dyi~~gpvf~t~tk~~~~~~g~~~~~~~~~~~---~~Pv~AiGGI-~~~~~~~~~ 298 (312)
T PRK08999 223 LPAGRWVAASCHDAEELARAQRLGVDFAVLSPVQPTASHPGAAPLGWEGFAALIAGV---PLPVYALGGL-GPGDLEEAR 298 (312)
T ss_pred CCCCCEEEEecCCHHHHHHHHhcCCCEEEECCCcCCCCCCCCCCCCHHHHHHHHHhC---CCCEEEECCC-CHHHHHHHH
Confidence 223567778999999999999999999998332 11223211222356677777665 7999999999 999999999
Q ss_pred HcCcceeeeccccc
Q 020013 186 SLGAQGICLGTRFV 199 (332)
Q Consensus 186 ~~GA~gV~~GT~fl 199 (332)
.+||+||.+-+.|+
T Consensus 299 ~~g~~gva~i~~~~ 312 (312)
T PRK08999 299 EHGAQGIAGIRGLW 312 (312)
T ss_pred HhCCCEEEEEEEeC
Confidence 99999999988763
|
|
| >PRK08318 dihydropyrimidine dehydrogenase subunit B; Validated | Back alignment and domain information |
|---|
Probab=99.08 E-value=4.2e-09 Score=102.69 Aligned_cols=137 Identities=18% Similarity=0.248 Sum_probs=94.8
Q ss_pred CCcEEEEeecC-CCC--HHHHHHHHhcCCcEEEEccCCCc---------------H---HHHHHHHh-CCCEEEEecC--
Q 020013 63 ERPFGVGVVLA-FPH--NENIKAILSEKVAVLQVSWGEYS---------------E---ELVLEAHS-AGVKVVPQVG-- 118 (332)
Q Consensus 63 ~~p~gvnl~~~-~~~--~~~~~~~~~~~~~~I~~~~g~~~---------------~---~~i~~~~~-~g~~v~~~v~-- 118 (332)
+.|+.++++.. .+. .+..+.+.+.++|+|.+++++|. . ++++.+++ ..++|+.+++
T Consensus 99 ~~p~i~si~g~~~~~~~~~~a~~~~~~g~d~ielN~scP~~~~~~~~g~~~~~~~~~~~~i~~~v~~~~~~Pv~vKl~p~ 178 (420)
T PRK08318 99 DRALIASIMVECNEEEWKEIAPLVEETGADGIELNFGCPHGMSERGMGSAVGQVPELVEMYTRWVKRGSRLPVIVKLTPN 178 (420)
T ss_pred CceEEEEeccCCCHHHHHHHHHHHHhcCCCEEEEeCCCCCCccccCCcccccCCHHHHHHHHHHHHhccCCcEEEEcCCC
Confidence 57888888776 321 33445556678999999877643 1 23444444 3678887765
Q ss_pred --CH-HHHHHHHHcCCCEEEEecC----------------------CCCcccCCCC---chhhhHHHHHHHhCCCCCcEE
Q 020013 119 --SF-DEARKAVNAGVDAIIVQGR----------------------EAGGHVIGQD---GLISLLPMVVDLIGDRDIPII 170 (332)
Q Consensus 119 --s~-~~a~~a~~~g~D~ivv~G~----------------------eaGGh~~~~~---~~~~ll~~i~~~~~~~~iPvi 170 (332)
+. +.++.+++.|+|+|++.++ ..||.. |+. -.+..+.++++.+...++|||
T Consensus 179 ~~~~~~~a~~~~~~Gadgi~~~Nt~~~~~~id~~~~~~~p~~~~~~~~gg~S-G~a~~p~~l~~v~~~~~~~~~~~ipIi 257 (420)
T PRK08318 179 ITDIREPARAAKRGGADAVSLINTINSITGVDLDRMIPMPIVNGKSSHGGYC-GPAVKPIALNMVAEIARDPETRGLPIS 257 (420)
T ss_pred cccHHHHHHHHHHCCCCEEEEecccCccccccccccCCCceecCCCCccccc-chhhhHHHHHHHHHHHhccccCCCCEE
Confidence 22 4456688899999996332 122332 221 136777777776521269999
Q ss_pred eecCcCCHHHHHHHHHcCcceeeecccccc
Q 020013 171 AAGGIVDARGYVAALSLGAQGICLGTRFVA 200 (332)
Q Consensus 171 aaGGI~~~~~v~~al~~GA~gV~~GT~fl~ 200 (332)
+.|||.+++|+.+++.+|||+||+||+++.
T Consensus 258 g~GGI~s~~da~e~i~aGA~~Vqi~ta~~~ 287 (420)
T PRK08318 258 GIGGIETWRDAAEFILLGAGTVQVCTAAMQ 287 (420)
T ss_pred eecCcCCHHHHHHHHHhCCChheeeeeecc
Confidence 999999999999999999999999999997
|
|
| >TIGR00007 phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase | Back alignment and domain information |
|---|
Probab=99.05 E-value=8.3e-09 Score=92.41 Aligned_cols=143 Identities=22% Similarity=0.320 Sum_probs=100.6
Q ss_pred HHHHHHHhhcCCcEEEEeecCCCCHHHHHHHHhcCCcEEEEccC--CCcHHHHHHHHhCC-CEEEEe-------------
Q 020013 53 DLIRKTRSLTERPFGVGVVLAFPHNENIKAILSEKVAVLQVSWG--EYSEELVLEAHSAG-VKVVPQ------------- 116 (332)
Q Consensus 53 ~~i~~~r~~~~~p~gvnl~~~~~~~~~~~~~~~~~~~~I~~~~g--~~~~~~i~~~~~~g-~~v~~~------------- 116 (332)
+.++++++.++.|+-++-.+.. .+.++.+.+.|++.|.+... ..+..+.+..+..| -++++.
T Consensus 62 ~~i~~i~~~~~~pi~~ggGI~~--~ed~~~~~~~Ga~~vvlgs~~l~d~~~~~~~~~~~g~~~i~~sid~~~~~v~~~g~ 139 (230)
T TIGR00007 62 PVIKKIVRETGVPVQVGGGIRS--LEDVEKLLDLGVDRVIIGTAAVENPDLVKELLKEYGPERIVVSLDARGGEVAVKGW 139 (230)
T ss_pred HHHHHHHHhcCCCEEEeCCcCC--HHHHHHHHHcCCCEEEEChHHhhCHHHHHHHHHHhCCCcEEEEEEEECCEEEEcCC
Confidence 4566666667788887654432 56788889999998877521 12333444455554 223321
Q ss_pred -----cCCHHHHHHHHHcCCCEEEEecCCCCcccCCCCchhhhHHHHHHHhCCCCCcEEeecCcCCHHHHHHHHHcCcce
Q 020013 117 -----VGSFDEARKAVNAGVDAIIVQGREAGGHVIGQDGLISLLPMVVDLIGDRDIPIIAAGGIVDARGYVAALSLGAQG 191 (332)
Q Consensus 117 -----v~s~~~a~~a~~~g~D~ivv~G~eaGGh~~~~~~~~~ll~~i~~~~~~~~iPviaaGGI~~~~~v~~al~~GA~g 191 (332)
....+.++.+.+.|+|.+++.....-|...+ ..+.++.++.+.. ++||+++|||.+.+++.+++..||+|
T Consensus 140 ~~~~~~~~~~~~~~~~~~g~~~ii~~~~~~~g~~~g--~~~~~i~~i~~~~---~ipvia~GGi~~~~di~~~~~~Gadg 214 (230)
T TIGR00007 140 LEKSEVSLEELAKRLEELGLEGIIYTDISRDGTLSG--PNFELTKELVKAV---NVPVIASGGVSSIDDLIALKKLGVYG 214 (230)
T ss_pred cccCCCCHHHHHHHHHhCCCCEEEEEeecCCCCcCC--CCHHHHHHHHHhC---CCCEEEeCCCCCHHHHHHHHHCCCCE
Confidence 1124456678889999999866544443322 3488888888876 79999999999999999999999999
Q ss_pred eeeccccccCc
Q 020013 192 ICLGTRFVASE 202 (332)
Q Consensus 192 V~~GT~fl~t~ 202 (332)
|++||+|+...
T Consensus 215 v~ig~a~~~~~ 225 (230)
T TIGR00007 215 VIVGKALYEGK 225 (230)
T ss_pred EEEeHHHHcCC
Confidence 99999998653
|
Examples of this enzyme in Actinobacteria have been found to be bifunctional, also possessing phosphoribosylanthranilate isomerase activity ; the trusted cutoff here has now been raised to 275.0 to exclude the bifunctional group, now represented by model TIGR01919. HisA from Lactococcus lactis was reported to be inactive (MEDLINE:93322317). |
| >PRK13125 trpA tryptophan synthase subunit alpha; Provisional | Back alignment and domain information |
|---|
Probab=99.05 E-value=5.1e-09 Score=94.70 Aligned_cols=144 Identities=17% Similarity=0.125 Sum_probs=98.5
Q ss_pred HHHHHHHhhcCCcEEE----EeecCCCCHHHHHHHHhcCCcEEEEcc---C--CCcHHHHHHHHhCCCEEEEecC---CH
Q 020013 53 DLIRKTRSLTERPFGV----GVVLAFPHNENIKAILSEKVAVLQVSW---G--EYSEELVLEAHSAGVKVVPQVG---SF 120 (332)
Q Consensus 53 ~~i~~~r~~~~~p~gv----nl~~~~~~~~~~~~~~~~~~~~I~~~~---g--~~~~~~i~~~~~~g~~v~~~v~---s~ 120 (332)
+.++++|+.++.|+.+ |.+.. ...++++.+.+.|++.|.+|. . ....++++.+++.|++.+..++ +.
T Consensus 64 ~~v~~vr~~~~~Pl~lM~y~n~~~~-~~~~~i~~~~~~Gadgvii~dlp~e~~~~~~~~~~~~~~~Gl~~~~~v~p~T~~ 142 (244)
T PRK13125 64 PLLEEVRKDVSVPIILMTYLEDYVD-SLDNFLNMARDVGADGVLFPDLLIDYPDDLEKYVEIIKNKGLKPVFFTSPKFPD 142 (244)
T ss_pred HHHHHHhccCCCCEEEEEecchhhh-CHHHHHHHHHHcCCCEEEECCCCCCcHHHHHHHHHHHHHcCCCEEEEECCCCCH
Confidence 4677787767788732 22222 225668889999999999982 1 1234677888999999887665 35
Q ss_pred HHHHHHHHcCCCEEEEecCCCC-cccCCCCchhhhHHHHHHHhCCCCCcEEeecCcCCHHHHHHHHHcCcceeeeccccc
Q 020013 121 DEARKAVNAGVDAIIVQGREAG-GHVIGQDGLISLLPMVVDLIGDRDIPIIAAGGIVDARGYVAALSLGAQGICLGTRFV 199 (332)
Q Consensus 121 ~~a~~a~~~g~D~ivv~G~eaG-Gh~~~~~~~~~ll~~i~~~~~~~~iPviaaGGI~~~~~v~~al~~GA~gV~~GT~fl 199 (332)
+..+...+....+++. +...| |.. -.......+.++++... +.||++.|||++++++.+++..|||++++||+++
T Consensus 143 e~l~~~~~~~~~~l~m-sv~~~~g~~-~~~~~~~~i~~lr~~~~--~~~i~v~gGI~~~e~i~~~~~~gaD~vvvGSai~ 218 (244)
T PRK13125 143 LLIHRLSKLSPLFIYY-GLRPATGVP-LPVSVERNIKRVRNLVG--NKYLVVGFGLDSPEDARDALSAGADGVVVGTAFI 218 (244)
T ss_pred HHHHHHHHhCCCEEEE-EeCCCCCCC-chHHHHHHHHHHHHhcC--CCCEEEeCCcCCHHHHHHHHHcCCCEEEECHHHH
Confidence 6666666665555544 43222 111 12233456666666553 4799999999999999999999999999999998
Q ss_pred cC
Q 020013 200 AS 201 (332)
Q Consensus 200 ~t 201 (332)
..
T Consensus 219 ~~ 220 (244)
T PRK13125 219 EE 220 (244)
T ss_pred HH
Confidence 63
|
|
| >PRK13957 indole-3-glycerol-phosphate synthase; Provisional | Back alignment and domain information |
|---|
Probab=99.05 E-value=1.1e-08 Score=91.69 Aligned_cols=167 Identities=16% Similarity=0.201 Sum_probs=115.6
Q ss_pred HHHHHHHHhCCC--ceeecCCCCC--CHHHHHHHHHHHHhhcCCcEEEEeecCCCCHHHHHHHHhcCCcEEEEccCCCcH
Q 020013 25 PELVAAVANAGG--LGLLRAPDWE--APDYLRDLIRKTRSLTERPFGVGVVLAFPHNENIKAILSEKVAVLQVSWGEYSE 100 (332)
Q Consensus 25 ~~la~avs~aGg--lG~i~~~~~~--~~e~~~~~i~~~r~~~~~p~gvnl~~~~~~~~~~~~~~~~~~~~I~~~~g~~~~ 100 (332)
.+++....++|. +.++.-+.|. +.+. ++.+++.++.|+-..=|+. ++.++..+...|+|+|.+.+...+.
T Consensus 64 ~~~A~~y~~~GA~aISVlTe~~~F~Gs~~~----l~~v~~~v~~PvL~KDFIi--d~~QI~ea~~~GADavLLI~~~L~~ 137 (247)
T PRK13957 64 VQIAKTYETLGASAISVLTDQSYFGGSLED----LKSVSSELKIPVLRKDFIL--DEIQIREARAFGASAILLIVRILTP 137 (247)
T ss_pred HHHHHHHHHCCCcEEEEEcCCCcCCCCHHH----HHHHHHhcCCCEEeccccC--CHHHHHHHHHcCCCEEEeEHhhCCH
Confidence 356665655553 4444332221 3443 5566666677766543433 2567778888999999887554433
Q ss_pred ----HHHHHHHhCCCEEEEecCCHHHHHHHHHcCCCEEEEecCCCCcccCCCCchhhhHHHHHHHhCCCCCcEEeecCcC
Q 020013 101 ----ELVLEAHSAGVKVVPQVGSFDEARKAVNAGVDAIIVQGREAGGHVIGQDGLISLLPMVVDLIGDRDIPIIAAGGIV 176 (332)
Q Consensus 101 ----~~i~~~~~~g~~v~~~v~s~~~a~~a~~~g~D~ivv~G~eaGGh~~~~~~~~~ll~~i~~~~~~~~iPviaaGGI~ 176 (332)
++++..+..|+.++..|++.+|+..+.+.|++.|-+.++.-.... .......++...++. ++.+|+.+||.
T Consensus 138 ~~l~~l~~~a~~lGle~LVEVh~~~El~~a~~~ga~iiGINnRdL~t~~----vd~~~~~~L~~~ip~-~~~~IsESGI~ 212 (247)
T PRK13957 138 SQIKSFLKHASSLGMDVLVEVHTEDEAKLALDCGAEIIGINTRDLDTFQ----IHQNLVEEVAAFLPP-NIVKVGESGIE 212 (247)
T ss_pred HHHHHHHHHHHHcCCceEEEECCHHHHHHHHhCCCCEEEEeCCCCccce----ECHHHHHHHHhhCCC-CcEEEEcCCCC
Confidence 455667778999999999999999999999999999877543221 112223344444432 67899999999
Q ss_pred CHHHHHHHHHcCcceeeeccccccCcc
Q 020013 177 DARGYVAALSLGAQGICLGTRFVASEE 203 (332)
Q Consensus 177 ~~~~v~~al~~GA~gV~~GT~fl~t~E 203 (332)
+++++..+... +|||.+|+++|.++.
T Consensus 213 t~~d~~~l~~~-~davLvG~~lm~~~d 238 (247)
T PRK13957 213 SRSDLDKFRKL-VDAALIGTYFMEKKD 238 (247)
T ss_pred CHHHHHHHHHh-CCEEEECHHHhCCCC
Confidence 99999998776 999999999998754
|
|
| >cd04724 Tryptophan_synthase_alpha Ttryptophan synthase (TRPS) alpha subunit (TSA) | Back alignment and domain information |
|---|
Probab=99.03 E-value=6e-09 Score=94.08 Aligned_cols=149 Identities=19% Similarity=0.205 Sum_probs=102.7
Q ss_pred HHHHHHHHHHhhcCCcEEEEeecC-CC-----CHHHHHHHHhcCCcEEEEccCCC---cHHHHHHHHhCCCEEEEec---
Q 020013 50 YLRDLIRKTRSLTERPFGVGVVLA-FP-----HNENIKAILSEKVAVLQVSWGEY---SEELVLEAHSAGVKVVPQV--- 117 (332)
Q Consensus 50 ~~~~~i~~~r~~~~~p~gvnl~~~-~~-----~~~~~~~~~~~~~~~I~~~~g~~---~~~~i~~~~~~g~~v~~~v--- 117 (332)
..-+.++++|+.++.|+ .++.. .+ .+.+++.+.+.|++.+.++ ..+ ..++++.+++.|++.+..+
T Consensus 63 ~~~~~~~~vr~~~~~pv--~lm~y~n~~~~~G~~~fi~~~~~aG~~giiip-Dl~~ee~~~~~~~~~~~g~~~i~~i~P~ 139 (242)
T cd04724 63 DVLELVKEIRKKNTIPI--VLMGYYNPILQYGLERFLRDAKEAGVDGLIIP-DLPPEEAEEFREAAKEYGLDLIFLVAPT 139 (242)
T ss_pred HHHHHHHHHhhcCCCCE--EEEEecCHHHHhCHHHHHHHHHHCCCcEEEEC-CCCHHHHHHHHHHHHHcCCcEEEEeCCC
Confidence 44556777776556774 34433 21 2677899999999999995 222 2356777888998766543
Q ss_pred CCHHHHHHHHHcCCCEEEEecC--CCCcccCCCCchhhhHHHHHHHhCCCCCcEEeecCcCCHHHHHHHHHcCcceeeec
Q 020013 118 GSFDEARKAVNAGVDAIIVQGR--EAGGHVIGQDGLISLLPMVVDLIGDRDIPIIAAGGIVDARGYVAALSLGAQGICLG 195 (332)
Q Consensus 118 ~s~~~a~~a~~~g~D~ivv~G~--eaGGh~~~~~~~~~ll~~i~~~~~~~~iPviaaGGI~~~~~v~~al~~GA~gV~~G 195 (332)
++.+..+...+...|.|.+.+. ..|+...........+.++++.. ++||++.|||.+++++.++..+ |||+++|
T Consensus 140 T~~~~i~~i~~~~~~~vy~~s~~g~tG~~~~~~~~~~~~i~~lr~~~---~~pI~vggGI~~~e~~~~~~~~-ADgvVvG 215 (242)
T cd04724 140 TPDERIKKIAELASGFIYYVSRTGVTGARTELPDDLKELIKRIRKYT---DLPIAVGFGISTPEQAAEVAKY-ADGVIVG 215 (242)
T ss_pred CCHHHHHHHHhhCCCCEEEEeCCCCCCCccCCChhHHHHHHHHHhcC---CCcEEEEccCCCHHHHHHHHcc-CCEEEEC
Confidence 2455666666656777666443 22333211234567777777754 7999999999999999999999 9999999
Q ss_pred cccccCccCC
Q 020013 196 TRFVASEESY 205 (332)
Q Consensus 196 T~fl~t~Es~ 205 (332)
|+|+..-|..
T Consensus 216 Saiv~~~~~~ 225 (242)
T cd04724 216 SALVKIIEEG 225 (242)
T ss_pred HHHHHHHHhc
Confidence 9998776543
|
TPRS is a bifunctional tetrameric enzyme (2 alpha and 2 beta subunits) that catalyzes the last two steps of L-tryptophan biosynthesis. Alpha and beta subunit catalyze two distinct reactions which are both strongly stimulated by the formation of the complex. The alpha subunit catalyzes the cleavage of indole 3-glycerol phosphate (IGP) to indole and d-glyceraldehyde 3-phosphate (G3P). Indole is then channeled to the active site of the beta subunit, a PLP-dependent enzyme that catalyzes a replacement reaction to convert L-serine into L-tryptophan. |
| >COG1304 idi Isopentenyl diphosphate isomerase (BS_ypgA, MTH48 and related proteins) [Coenzyme transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.03 E-value=3.6e-09 Score=100.04 Aligned_cols=98 Identities=29% Similarity=0.388 Sum_probs=79.1
Q ss_pred EEecCCHHHHHHHHHcCCCEEEEecCCCCccc-CCCCchhhhHHHHHHHhCCCCCcEEeecCcCCHHHHHHHHHcCccee
Q 020013 114 VPQVGSFDEARKAVNAGVDAIIVQGREAGGHV-IGQDGLISLLPMVVDLIGDRDIPIIAAGGIVDARGYVAALSLGAQGI 192 (332)
Q Consensus 114 ~~~v~s~~~a~~a~~~g~D~ivv~G~eaGGh~-~~~~~~~~ll~~i~~~~~~~~iPviaaGGI~~~~~v~~al~~GA~gV 192 (332)
...+.+++++..+...|+|+|++.+. ||.. ++..+++..|+++++.++. ++||+++|||.++.|+.+++++||++|
T Consensus 223 ~kGV~~~~D~~~a~~tg~~~I~vsnh--ggrqlD~g~st~~~L~ei~~av~~-~~~vi~dGGiR~G~Dv~KAlALGA~~v 299 (360)
T COG1304 223 LKGILAPEDAAGAGGTGADGIEVSNH--GGRQLDWGISTADSLPEIVEAVGD-RIEVIADGGIRSGLDVAKALALGADAV 299 (360)
T ss_pred HhCCCCHHHHHhhccCCceEEEEEcC--CCccccCCCChHHHHHHHHHHhCC-CeEEEecCCCCCHHHHHHHHHhCCchh
Confidence 34577889999999999999999876 4432 2335789999999999853 499999999999999999999999999
Q ss_pred eeccccccCccCCCCHHHHHHH
Q 020013 193 CLGTRFVASEESYAHPEYKRKL 214 (332)
Q Consensus 193 ~~GT~fl~t~Es~~~~~~k~~~ 214 (332)
.+|..|+..-.....+...+.|
T Consensus 300 ~igrp~L~~l~~~g~~GV~~~l 321 (360)
T COG1304 300 GIGRPFLYGLAAGGEAGVERVL 321 (360)
T ss_pred hhhHHHHHHHHhccHHHHHHHH
Confidence 9999998776665544344333
|
|
| >PLN02898 HMP-P kinase/thiamin-monophosphate pyrophosphorylase | Back alignment and domain information |
|---|
Probab=99.02 E-value=1.1e-08 Score=102.01 Aligned_cols=167 Identities=16% Similarity=0.235 Sum_probs=115.1
Q ss_pred HHHHHHHhCCCceeecCCC-CCCHHHHHHHHHHHHhhcCCcEEEEeecCCCCHHHHHHHHhcCCcEEEEccCCCcHHHHH
Q 020013 26 ELVAAVANAGGLGLLRAPD-WEAPDYLRDLIRKTRSLTERPFGVGVVLAFPHNENIKAILSEKVAVLQVSWGEYSEELVL 104 (332)
Q Consensus 26 ~la~avs~aGglG~i~~~~-~~~~e~~~~~i~~~r~~~~~p~gvnl~~~~~~~~~~~~~~~~~~~~I~~~~g~~~~~~i~ 104 (332)
+.+....++| +..+.... ..+.+.+.+.++++++.... +++.++++ +.++.+.+.+++.|++...+.+....+
T Consensus 311 ~~l~~~l~~G-v~~vqlR~k~~~~~~~~~~a~~l~~~~~~-~~~~liin----d~~~lA~~~~adGvHl~~~d~~~~~~r 384 (502)
T PLN02898 311 DAVRAAIEGG-ATIVQLREKEAETREFIEEAKACLAICRS-YGVPLLIN----DRVDVALACDADGVHLGQSDMPVRLAR 384 (502)
T ss_pred HHHHHHHHcC-CCEEEEccCCCCHHHHHHHHHHHHHHHHH-hCCEEEEc----ChHHHHHhcCCCEEEeChHhcCHHHHH
Confidence 3445554544 67665421 13455666777777665432 56777774 457888899999999975544444444
Q ss_pred HHHhCCCEEEEecCCHHHHHHHHHcCCCEEEEecC-CCCcccCCCCchhhhHHHHHHHhCCCCCcEEeecCcCCHHHHHH
Q 020013 105 EAHSAGVKVVPQVGSFDEARKAVNAGVDAIIVQGR-EAGGHVIGQDGLISLLPMVVDLIGDRDIPIIAAGGIVDARGYVA 183 (332)
Q Consensus 105 ~~~~~g~~v~~~v~s~~~a~~a~~~g~D~ivv~G~-eaGGh~~~~~~~~~ll~~i~~~~~~~~iPviaaGGI~~~~~v~~ 183 (332)
.....+..+...+++.+++..+.+.|+|||.+-.. ....|...+...+..++++.+.. ++||++.||| +++++.+
T Consensus 385 ~~~~~~~~iG~S~h~~~e~~~a~~~gadyi~~gpif~t~tk~~~~~~g~~~~~~~~~~~---~~Pv~aiGGI-~~~~~~~ 460 (502)
T PLN02898 385 SLLGPGKIIGVSCKTPEQAEQAWKDGADYIGCGGVFPTNTKANNKTIGLDGLREVCEAS---KLPVVAIGGI-SASNAAS 460 (502)
T ss_pred HhcCCCCEEEEeCCCHHHHHHHhhcCCCEEEECCeecCCCCCCCCCCCHHHHHHHHHcC---CCCEEEECCC-CHHHHHH
Confidence 43334567778899999999999999999986211 12222211122366777776654 7999999999 8999999
Q ss_pred HHHcCcc---eeeeccccccCc
Q 020013 184 ALSLGAQ---GICLGTRFVASE 202 (332)
Q Consensus 184 al~~GA~---gV~~GT~fl~t~ 202 (332)
++.+|++ ||.+++.++.++
T Consensus 461 ~~~~G~~~~~gvav~~~i~~~~ 482 (502)
T PLN02898 461 VMESGAPNLKGVAVVSALFDQE 482 (502)
T ss_pred HHHcCCCcCceEEEEeHHhcCC
Confidence 9999999 999999998653
|
|
| >COG0134 TrpC Indole-3-glycerol phosphate synthase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.01 E-value=4.8e-09 Score=93.74 Aligned_cols=168 Identities=19% Similarity=0.258 Sum_probs=118.3
Q ss_pred HHHHHHHHhCCC--ceeecCCCCC--CHHHHHHHHHHHHhhcCCcEEEEeecCCCCHHHHHHHHhcCCcEEEEccCCC--
Q 020013 25 PELVAAVANAGG--LGLLRAPDWE--APDYLRDLIRKTRSLTERPFGVGVVLAFPHNENIKAILSEKVAVLQVSWGEY-- 98 (332)
Q Consensus 25 ~~la~avs~aGg--lG~i~~~~~~--~~e~~~~~i~~~r~~~~~p~gvnl~~~~~~~~~~~~~~~~~~~~I~~~~g~~-- 98 (332)
.+++.+..++|. +.++.-+.|. +++. ++.+++.+..|+-..=|+. ++.++..+...|+|+|.+-....
T Consensus 69 ~~ia~~Ye~~GAa~iSVLTd~~~F~Gs~e~----L~~v~~~v~~PvL~KDFii--D~yQI~~Ar~~GADavLLI~~~L~~ 142 (254)
T COG0134 69 VEIAKAYEEGGAAAISVLTDPKYFQGSFED----LRAVRAAVDLPVLRKDFII--DPYQIYEARAAGADAVLLIVAALDD 142 (254)
T ss_pred HHHHHHHHHhCCeEEEEecCccccCCCHHH----HHHHHHhcCCCeeeccCCC--CHHHHHHHHHcCcccHHHHHHhcCH
Confidence 345666666553 4444433222 3444 4666666778866544443 35678888999999987643222
Q ss_pred --cHHHHHHHHhCCCEEEEecCCHHHHHHHHHcCCCEEEEecCCCCcccCCCCchhhhHHHHHHHhCCCCCcEEeecCcC
Q 020013 99 --SEELVLEAHSAGVKVVPQVGSFDEARKAVNAGVDAIIVQGREAGGHVIGQDGLISLLPMVVDLIGDRDIPIIAAGGIV 176 (332)
Q Consensus 99 --~~~~i~~~~~~g~~v~~~v~s~~~a~~a~~~g~D~ivv~G~eaGGh~~~~~~~~~ll~~i~~~~~~~~iPviaaGGI~ 176 (332)
..++.+..++.|+.++..|++.+|+.++.+.|++.|-+.++.--... ..+....++....+. +.-+|.-+||.
T Consensus 143 ~~l~el~~~A~~LGm~~LVEVh~~eEl~rAl~~ga~iIGINnRdL~tf~----vdl~~t~~la~~~p~-~~~~IsESGI~ 217 (254)
T COG0134 143 EQLEELVDRAHELGMEVLVEVHNEEELERALKLGAKIIGINNRDLTTLE----VDLETTEKLAPLIPK-DVILISESGIS 217 (254)
T ss_pred HHHHHHHHHHHHcCCeeEEEECCHHHHHHHHhCCCCEEEEeCCCcchhe----ecHHHHHHHHhhCCC-CcEEEecCCCC
Confidence 23566777889999999999999999999999999998777443321 112222333333332 57899999999
Q ss_pred CHHHHHHHHHcCcceeeeccccccCcc
Q 020013 177 DARGYVAALSLGAQGICLGTRFVASEE 203 (332)
Q Consensus 177 ~~~~v~~al~~GA~gV~~GT~fl~t~E 203 (332)
+++++..+...||+|+.+||++|.++.
T Consensus 218 ~~~dv~~l~~~ga~a~LVG~slM~~~~ 244 (254)
T COG0134 218 TPEDVRRLAKAGADAFLVGEALMRADD 244 (254)
T ss_pred CHHHHHHHHHcCCCEEEecHHHhcCCC
Confidence 999999999999999999999998865
|
|
| >PRK02506 dihydroorotate dehydrogenase 1A; Reviewed | Back alignment and domain information |
|---|
Probab=99.01 E-value=3e-08 Score=92.76 Aligned_cols=189 Identities=16% Similarity=0.160 Sum_probs=114.3
Q ss_pred CCccceecCCCCCCCCcHHHHHHHHhCCCceeecCCCC----------------------------CCHHHHHHHHHHHH
Q 020013 8 GFEYGIVQAPLGPDISGPELVAAVANAGGLGLLRAPDW----------------------------EAPDYLRDLIRKTR 59 (332)
Q Consensus 8 ~~~~Pii~apM~~g~s~~~la~avs~aGglG~i~~~~~----------------------------~~~e~~~~~i~~~r 59 (332)
.++.||+.|.=. ...+.+....+..+| +|++..++. ...+.+.+.+++++
T Consensus 10 ~l~NPv~~AsG~-~~~~~e~~~~~~~~g-~Gavv~ktit~~p~~gn~~pr~~~~~~~~~N~~Gl~n~g~~~~~~~i~~~~ 87 (310)
T PRK02506 10 KFDNCLMNAAGV-YCMTKEELEEVEASA-AGAFVTKSATLEPRPGNPEPRYADTPLGSINSMGLPNLGFDYYLDYVLELQ 87 (310)
T ss_pred ECCCCCEeCCCC-CCCCHHHHHHHHHcC-CcEEEeCccCCCCCCCCCCCeEEECcchhhccCCCCCcCHHHHHHHHHHHH
Confidence 367899977743 224677777776665 666633210 11344444555554
Q ss_pred hh-cCCcEEEEeecCCCC--HHHHHHHHhcC-CcEEEEccCCC-----------cH---HHHHHHHh-CCCEEEEecC--
Q 020013 60 SL-TERPFGVGVVLAFPH--NENIKAILSEK-VAVLQVSWGEY-----------SE---ELVLEAHS-AGVKVVPQVG-- 118 (332)
Q Consensus 60 ~~-~~~p~gvnl~~~~~~--~~~~~~~~~~~-~~~I~~~~g~~-----------~~---~~i~~~~~-~g~~v~~~v~-- 118 (332)
+. .+.|+.+++...... .+..+.+.+.+ +|+|.++..+| +. ++++.+++ ..++++.+++
T Consensus 88 ~~~~~~pvI~Si~G~~~~~~~~~a~~~~~~g~ad~iElN~ScPn~~~~~~~g~d~~~~~~i~~~v~~~~~~Pv~vKlsp~ 167 (310)
T PRK02506 88 KKGPNKPHFLSVVGLSPEETHTILKKIQASDFNGLVELNLSCPNVPGKPQIAYDFETTEQILEEVFTYFTKPLGVKLPPY 167 (310)
T ss_pred hhcCCCCEEEEEEeCcHHHHHHHHHHHhhcCCCCEEEEECCCCCCCCccccccCHHHHHHHHHHHHHhcCCccEEecCCC
Confidence 43 257888888765431 22334444556 89999876654 22 23444544 3567776655
Q ss_pred -CH-HHHHHHH---HcCCCEEEEecC--------------------CCCcccCCC-C--chhhhHHHHHHHhCCCCCcEE
Q 020013 119 -SF-DEARKAV---NAGVDAIIVQGR--------------------EAGGHVIGQ-D--GLISLLPMVVDLIGDRDIPII 170 (332)
Q Consensus 119 -s~-~~a~~a~---~~g~D~ivv~G~--------------------eaGGh~~~~-~--~~~~ll~~i~~~~~~~~iPvi 170 (332)
+. +.++.+. +.|+|+|...+. ..||-. |+ . ..+..+.++++.+.. ++|||
T Consensus 168 ~~~~~~a~~~~~~~~~g~~~i~~~nt~~~~~~iD~~~~~~~~~~~~~~GGlS-G~~i~p~al~~v~~~~~~~~~-~ipIi 245 (310)
T PRK02506 168 FDIVHFDQAAAIFNKFPLAFVNCINSIGNGLVIDPEDETVVIKPKNGFGGIG-GDYIKPTALANVRAFYQRLNP-SIQII 245 (310)
T ss_pred CCHHHHHHHHHHhCcCceEEEEEeccCCCceEEecCCCCccccCCCCCCcCC-chhccHHHHHHHHHHHHhcCC-CCCEE
Confidence 22 2233333 446676554321 112222 22 1 235556666666532 69999
Q ss_pred eecCcCCHHHHHHHHHcCcceeeecccccc
Q 020013 171 AAGGIVDARGYVAALSLGAQGICLGTRFVA 200 (332)
Q Consensus 171 aaGGI~~~~~v~~al~~GA~gV~~GT~fl~ 200 (332)
+.|||.+++|+.+++.+||+.||++|+++.
T Consensus 246 g~GGI~s~~da~e~i~aGA~~Vqv~ta~~~ 275 (310)
T PRK02506 246 GTGGVKTGRDAFEHILCGASMVQVGTALHK 275 (310)
T ss_pred EECCCCCHHHHHHHHHcCCCHHhhhHHHHH
Confidence 999999999999999999999999999986
|
|
| >COG0159 TrpA Tryptophan synthase alpha chain [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.00 E-value=2.7e-08 Score=89.55 Aligned_cols=157 Identities=18% Similarity=0.205 Sum_probs=104.7
Q ss_pred CCHHHHHHHHHHHHhh-cCCcEEE----EeecCCCCHHHHHHHHhcCCcEEEEccCCCcH---HHHHHHHhCCCEEEEec
Q 020013 46 EAPDYLRDLIRKTRSL-TERPFGV----GVVLAFPHNENIKAILSEKVAVLQVSWGEYSE---ELVLEAHSAGVKVVPQV 117 (332)
Q Consensus 46 ~~~e~~~~~i~~~r~~-~~~p~gv----nl~~~~~~~~~~~~~~~~~~~~I~~~~g~~~~---~~i~~~~~~g~~v~~~v 117 (332)
.+.+..-++++++|+. .+.|+.+ |.+.....+.+++.+.+.|+|.+.+. ..|++ ++.+.+++.|+..+.-|
T Consensus 76 ~t~~~~lel~~~~r~~~~~~Pivlm~Y~Npi~~~Gie~F~~~~~~~GvdGlivp-DLP~ee~~~~~~~~~~~gi~~I~lv 154 (265)
T COG0159 76 VTLEDTLELVEEIRAKGVKVPIVLMTYYNPIFNYGIEKFLRRAKEAGVDGLLVP-DLPPEESDELLKAAEKHGIDPIFLV 154 (265)
T ss_pred CCHHHHHHHHHHHHhcCCCCCEEEEEeccHHHHhhHHHHHHHHHHcCCCEEEeC-CCChHHHHHHHHHHHHcCCcEEEEe
Confidence 3556667788888854 5678765 44444444677889999999999887 43332 35566677888766544
Q ss_pred --CCH-HHHHHHHHcCCCEEEEecC-CCCcccCC-CCchhhhHHHHHHHhCCCCCcEEeecCcCCHHHHHHHHHcCccee
Q 020013 118 --GSF-DEARKAVNAGVDAIIVQGR-EAGGHVIG-QDGLISLLPMVVDLIGDRDIPIIAAGGIVDARGYVAALSLGAQGI 192 (332)
Q Consensus 118 --~s~-~~a~~a~~~g~D~ivv~G~-eaGGh~~~-~~~~~~ll~~i~~~~~~~~iPviaaGGI~~~~~v~~al~~GA~gV 192 (332)
++. +..++..+..-.+|.+... ...|-... ......++..+++.. ++||+..-||+++++++++.+. ||||
T Consensus 155 aPtt~~~rl~~i~~~a~GFiY~vs~~GvTG~~~~~~~~~~~~v~~vr~~~---~~Pv~vGFGIs~~e~~~~v~~~-ADGV 230 (265)
T COG0159 155 APTTPDERLKKIAEAASGFIYYVSRMGVTGARNPVSADVKELVKRVRKYT---DVPVLVGFGISSPEQAAQVAEA-ADGV 230 (265)
T ss_pred CCCCCHHHHHHHHHhCCCcEEEEecccccCCCcccchhHHHHHHHHHHhc---CCCeEEecCcCCHHHHHHHHHh-CCeE
Confidence 344 4444444443334444333 22232211 112456677777665 8999999999999999999999 9999
Q ss_pred eeccccccCccCCCC
Q 020013 193 CLGTRFVASEESYAH 207 (332)
Q Consensus 193 ~~GT~fl~t~Es~~~ 207 (332)
++||+|+..-|....
T Consensus 231 IVGSAiV~~i~~~~~ 245 (265)
T COG0159 231 IVGSAIVKIIEEGLD 245 (265)
T ss_pred EEcHHHHHHHHhccc
Confidence 999999988776543
|
|
| >PRK14057 epimerase; Provisional | Back alignment and domain information |
|---|
Probab=99.00 E-value=1.7e-08 Score=90.60 Aligned_cols=140 Identities=11% Similarity=0.085 Sum_probs=101.4
Q ss_pred HHHHHhhcCCcEEEEeecCCCCHHHHHHHHhcCCcEEEEccCC--CcHHHHHHHHhCCCE---------EEE--ec-CCH
Q 020013 55 IRKTRSLTERPFGVGVVLAFPHNENIKAILSEKVAVLQVSWGE--YSEELVLEAHSAGVK---------VVP--QV-GSF 120 (332)
Q Consensus 55 i~~~r~~~~~p~gvnl~~~~~~~~~~~~~~~~~~~~I~~~~g~--~~~~~i~~~~~~g~~---------v~~--~v-~s~ 120 (332)
++.+++ +.|+-|++++..| +.+++.+.++|+|.|.+|+.. .+.+.++.+|+.|++ ... .. +++
T Consensus 69 i~~i~~--~~p~DvHLMV~~P-~~~i~~~~~aGad~It~H~Ea~~~~~~~l~~Ir~~G~k~~~~~~~~kaGlAlnP~Tp~ 145 (254)
T PRK14057 69 VGQLPQ--TFIKDVHLMVADQ-WTAAQACVKAGAHCITLQAEGDIHLHHTLSWLGQQTVPVIGGEMPVIRGISLCPATPL 145 (254)
T ss_pred HHHhcc--CCCeeEEeeeCCH-HHHHHHHHHhCCCEEEEeeccccCHHHHHHHHHHcCCCcccccccceeEEEECCCCCH
Confidence 334444 5799999999887 678999999999999999652 245788899998873 332 22 345
Q ss_pred HHHHHHHHcCCCEEEEe--cCCCCcccCCCCchhhhHHHHHHHhCC--CCCcEEeecCcCCHHHHHHHHHcCcceeeecc
Q 020013 121 DEARKAVNAGVDAIIVQ--GREAGGHVIGQDGLISLLPMVVDLIGD--RDIPIIAAGGIVDARGYVAALSLGAQGICLGT 196 (332)
Q Consensus 121 ~~a~~a~~~g~D~ivv~--G~eaGGh~~~~~~~~~ll~~i~~~~~~--~~iPviaaGGI~~~~~v~~al~~GA~gV~~GT 196 (332)
+.....+. -+|.|.+- .+..||+. -....+..+.++++..++ .++.|.+.||| +.+++..+.++|||.+++||
T Consensus 146 e~i~~~l~-~vD~VLvMtV~PGfgGQ~-Fi~~~l~KI~~lr~~~~~~~~~~~IeVDGGI-~~~ti~~l~~aGad~~V~GS 222 (254)
T PRK14057 146 DVIIPILS-DVEVIQLLAVNPGYGSKM-RSSDLHERVAQLLCLLGDKREGKIIVIDGSL-TQDQLPSLIAQGIDRVVSGS 222 (254)
T ss_pred HHHHHHHH-hCCEEEEEEECCCCCchh-ccHHHHHHHHHHHHHHHhcCCCceEEEECCC-CHHHHHHHHHCCCCEEEECh
Confidence 55554554 59999873 45555654 223456666666655432 24679999999 89999999999999999999
Q ss_pred cccc
Q 020013 197 RFVA 200 (332)
Q Consensus 197 ~fl~ 200 (332)
++..
T Consensus 223 alF~ 226 (254)
T PRK14057 223 ALFR 226 (254)
T ss_pred HhhC
Confidence 9775
|
|
| >COG0434 SgcQ Predicted TIM-barrel enzyme [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.99 E-value=2.2e-08 Score=87.47 Aligned_cols=161 Identities=22% Similarity=0.337 Sum_probs=109.3
Q ss_pred HHHHHHhCCCceeecCCCC--------CCHH---HHHHHHHHHHhhcCCcEEEEeecCCCCHHHHHHHHhcCCcEEEEc-
Q 020013 27 LVAAVANAGGLGLLRAPDW--------EAPD---YLRDLIRKTRSLTERPFGVGVVLAFPHNENIKAILSEKVAVLQVS- 94 (332)
Q Consensus 27 la~avs~aGglG~i~~~~~--------~~~e---~~~~~i~~~r~~~~~p~gvnl~~~~~~~~~~~~~~~~~~~~I~~~- 94 (332)
.+.+..++|.=++|.. +| ..|+ .+...+++++.....|+|||++-|.+ ...+.++...++++|-.+
T Consensus 39 dA~~leegG~DavivE-N~gD~Pf~k~v~~~tvaaMa~iv~~v~r~v~iPvGvNVLrNd~-vaA~~IA~a~gA~FIRVN~ 116 (263)
T COG0434 39 DAAALEEGGVDAVIVE-NYGDAPFLKDVGPETVAAMAVIVREVVREVSIPVGVNVLRNDA-VAALAIAYAVGADFIRVNV 116 (263)
T ss_pred HHHHHHhCCCcEEEEe-ccCCCCCCCCCChHHHHHHHHHHHHHHHhccccceeeeecccc-HHHHHHHHhcCCCEEEEEe
Confidence 3445555555566643 22 1233 34455666666678999999998776 566778888899998643
Q ss_pred --------cCCC---cHHHHHHHH--hCCCEEEEecC----------CHHHHH-H-HHHcCCCEEEEecCCCCcccCCCC
Q 020013 95 --------WGEY---SEELVLEAH--SAGVKVVPQVG----------SFDEAR-K-AVNAGVDAIIVQGREAGGHVIGQD 149 (332)
Q Consensus 95 --------~g~~---~~~~i~~~~--~~g~~v~~~v~----------s~~~a~-~-a~~~g~D~ivv~G~eaGGh~~~~~ 149 (332)
.|.. ..++.+..+ ..+++++..++ +.+++. . .+..++|+||+.|...|+ .
T Consensus 117 ~tg~~~tdqGiieg~A~e~~r~r~~L~~~v~vlADv~VKHa~~l~~~~~~~~v~dtver~~aDaVI~tG~~TG~-----~ 191 (263)
T COG0434 117 LTGAYATDQGIIEGNAAELARYRARLGSRVKVLADVHVKHAVHLGNRSLEEAVKDTVERGLADAVIVTGSRTGS-----P 191 (263)
T ss_pred eeceEecccceecchHHHHHHHHHhccCCcEEEeecchhcccccCCcCHHHHHHHHHHccCCCEEEEecccCCC-----C
Confidence 2221 123333222 25788887653 555543 3 456689999998775443 3
Q ss_pred chhhhHHHHHHHhCCCCCcEEeecCcCCHHHHHHHHHcCcceeeeccccc
Q 020013 150 GLISLLPMVVDLIGDRDIPIIAAGGIVDARGYVAALSLGAQGICLGTRFV 199 (332)
Q Consensus 150 ~~~~ll~~i~~~~~~~~iPviaaGGI~~~~~v~~al~~GA~gV~~GT~fl 199 (332)
+....|..+++.. +.||++..|+ +++|+...+.. |||+++||.|=
T Consensus 192 ~d~~el~~a~~~~---~~pvlvGSGv-~~eN~~~~l~~-adG~IvgT~lK 236 (263)
T COG0434 192 PDLEELKLAKEAV---DTPVLVGSGV-NPENIEELLKI-ADGVIVGTSLK 236 (263)
T ss_pred CCHHHHHHHHhcc---CCCEEEecCC-CHHHHHHHHHH-cCceEEEEEEc
Confidence 4567777777776 7999999999 89999999999 99999999864
|
|
| >PRK04302 triosephosphate isomerase; Provisional | Back alignment and domain information |
|---|
Probab=98.98 E-value=1.8e-08 Score=89.92 Aligned_cols=123 Identities=22% Similarity=0.233 Sum_probs=89.6
Q ss_pred HHHHHHHHhcCCcEEEEccC---CC---cHHHHHHHHhCCCEEEEecCCHHHHHHHHHcCCCEEEEecCCCCcccCC---
Q 020013 77 NENIKAILSEKVAVLQVSWG---EY---SEELVLEAHSAGVKVVPQVGSFDEARKAVNAGVDAIIVQGREAGGHVIG--- 147 (332)
Q Consensus 77 ~~~~~~~~~~~~~~I~~~~g---~~---~~~~i~~~~~~g~~v~~~v~s~~~a~~a~~~g~D~ivv~G~eaGGh~~~--- 147 (332)
+..++.+.+.|++.|.+... .+ ..+.++.+++.|+.++..+++.++++.+.+.++|+|-+....+-|+..+
T Consensus 75 ~~~~~~l~~~G~~~vii~~ser~~~~~e~~~~v~~a~~~Gl~~I~~v~~~~~~~~~~~~~~~~I~~~p~~~igt~~~~~~ 154 (223)
T PRK04302 75 HILPEAVKDAGAVGTLINHSERRLTLADIEAVVERAKKLGLESVVCVNNPETSAAAAALGPDYVAVEPPELIGTGIPVSK 154 (223)
T ss_pred hhHHHHHHHcCCCEEEEeccccccCHHHHHHHHHHHHHCCCeEEEEcCCHHHHHHHhcCCCCEEEEeCccccccCCCCCc
Confidence 44578888899999988632 11 1245667778899999899999999988889999988876544343211
Q ss_pred C--CchhhhHHHHHHHhCCCCCcEEeecCcCCHHHHHHHHHcCcceeeeccccccC
Q 020013 148 Q--DGLISLLPMVVDLIGDRDIPIIAAGGIVDARGYVAALSLGAQGICLGTRFVAS 201 (332)
Q Consensus 148 ~--~~~~~ll~~i~~~~~~~~iPviaaGGI~~~~~v~~al~~GA~gV~~GT~fl~t 201 (332)
. ......+..+++.. .++||++.|||.+++++..++..|+|||.+||+++.+
T Consensus 155 ~~~~~i~~~~~~ir~~~--~~~pvi~GggI~~~e~~~~~~~~gadGvlVGsa~l~~ 208 (223)
T PRK04302 155 AKPEVVEDAVEAVKKVN--PDVKVLCGAGISTGEDVKAALELGADGVLLASGVVKA 208 (223)
T ss_pred CCHHHHHHHHHHHHhcc--CCCEEEEECCCCCHHHHHHHHcCCCCEEEEehHHhCC
Confidence 1 11122233333322 2689999999999999999999999999999999965
|
|
| >PF01645 Glu_synthase: Conserved region in glutamate synthase; InterPro: IPR002932 Ferredoxin-dependent glutamate synthases have been implicated in a number of functions including photorespiration in Arabidopsis where they may also play a role in primary nitrogen assimilation in roots [] | Back alignment and domain information |
|---|
Probab=98.97 E-value=7.3e-10 Score=104.67 Aligned_cols=197 Identities=21% Similarity=0.254 Sum_probs=99.5
Q ss_pred cCCccceecCCCCCCCCcHH----HHHHHHhCCCceeecCCCCCCHHHHHHHHHH-HHhhcCCcEEEEe-----------
Q 020013 7 LGFEYGIVQAPLGPDISGPE----LVAAVANAGGLGLLRAPDWEAPDYLRDLIRK-TRSLTERPFGVGV----------- 70 (332)
Q Consensus 7 l~~~~Pii~apM~~g~s~~~----la~avs~aGglG~i~~~~~~~~e~~~~~i~~-~r~~~~~p~gvnl----------- 70 (332)
+.++.|++.++|+.|.-+.+ |+.++..+|..-.-+.+ -.+|+.+...-+. +.+.....||++-
T Consensus 62 ~~l~~p~~is~MS~GaLS~~a~~Ala~ga~~~G~~~ntGEG-g~~~~~~~~~~~~~I~Q~~sg~fGv~~~~l~~a~~iEI 140 (368)
T PF01645_consen 62 LELSIPFMISAMSYGALSEEAKEALAKGANMAGTASNTGEG-GELPEERKAAKDLRIKQIASGRFGVRPEYLKQADMIEI 140 (368)
T ss_dssp HHHHTTEEEEEB-CTTC-HHHHHHHHHHHHHCT-EEEETTT----GGGCSB-TTSSEEEE-TT-TT--HHHHCC-SEEEE
T ss_pred hhheeeeecccCChhhcCHHHHHHHHHHHHHhCceEecCCC-CCCHHHhcccCCceEEEcCCCCCCCCHHHhcCCCeEEE
Confidence 55789999999998854544 45555555644333443 3455443222111 2222233344331
Q ss_pred ecCC---C----------CHHHHHHHH--hcCCcEEEEc--cCCC-cH---HHHHHHHhC--CCEEEEecC---CHHHHH
Q 020013 71 VLAF---P----------HNENIKAIL--SEKVAVLQVS--WGEY-SE---ELVLEAHSA--GVKVVPQVG---SFDEAR 124 (332)
Q Consensus 71 ~~~~---~----------~~~~~~~~~--~~~~~~I~~~--~g~~-~~---~~i~~~~~~--g~~v~~~v~---s~~~a~ 124 (332)
-+.+ | ..+.+..+. ..+.+.++-+ .+.. ++ ++++.+|+. +.+|..++. ..+...
T Consensus 141 KigQGAKpG~GG~Lp~~KV~~~ia~~R~~~~g~~~iSP~~h~di~s~edl~~~I~~Lr~~~~~~pVgvKl~~~~~~~~~~ 220 (368)
T PF01645_consen 141 KIGQGAKPGEGGHLPGEKVTEEIARIRGVPPGVDLISPPPHHDIYSIEDLAQLIEELRELNPGKPVGVKLVAGRGVEDIA 220 (368)
T ss_dssp E---TTSTTT--EE-GGG--HHHHHHHTS-TT--EE--SS-TT-SSHHHHHHHHHHHHHH-TTSEEEEEEE-STTHHHHH
T ss_pred EEecCccccCcceechhhchHHHHHHhCCCCCCccccCCCCCCcCCHHHHHHHHHHHHhhCCCCcEEEEECCCCcHHHHH
Confidence 1111 0 122233332 2356666542 1111 22 456666663 577765542 334333
Q ss_pred H-HHHcCCCEEEEecCCCCcccCCC--------CchhhhHHHHHHHhCC----CCCcEEeecCcCCHHHHHHHHHcCcce
Q 020013 125 K-AVNAGVDAIIVQGREAGGHVIGQ--------DGLISLLPMVVDLIGD----RDIPIIAAGGIVDARGYVAALSLGAQG 191 (332)
Q Consensus 125 ~-a~~~g~D~ivv~G~eaGGh~~~~--------~~~~~ll~~i~~~~~~----~~iPviaaGGI~~~~~v~~al~~GA~g 191 (332)
. +.++|+|+|+++|.++|... .+ .++...+.++.+.+.. .++.++++|||.++.|+.+++++|||+
T Consensus 221 ~~~~~ag~D~ItIDG~~GGTGA-ap~~~~d~~GlP~~~~l~~a~~~L~~~glr~~V~Li~sGgl~t~~dv~kalaLGAD~ 299 (368)
T PF01645_consen 221 AGAAKAGADFITIDGAEGGTGA-APLTSMDHVGLPTEYALARAHQALVKNGLRDRVSLIASGGLRTGDDVAKALALGADA 299 (368)
T ss_dssp HHHHHTT-SEEEEE-TT---SS-EECCHHHHC---HHHHHHHHHHHHHCTT-CCCSEEEEESS--SHHHHHHHHHCT-SE
T ss_pred HhhhhccCCEEEEeCCCCCCCC-CchhHHhhCCCcHHHHHHHHHHHHHHcCCCCceEEEEeCCccCHHHHHHHHhcCCCe
Confidence 3 77899999999999866432 11 2344456666655421 368999999999999999999999999
Q ss_pred eeeccccccCccCC
Q 020013 192 ICLGTRFVASEESY 205 (332)
Q Consensus 192 V~~GT~fl~t~Es~ 205 (332)
|.+||.+|.+-.|.
T Consensus 300 v~igt~~liAlGC~ 313 (368)
T PF01645_consen 300 VYIGTAALIALGCI 313 (368)
T ss_dssp EE-SHHHHHHCT--
T ss_pred eEecchhhhhcchH
Confidence 99999999998875
|
This region is expressed as a seperate subunit in the glutamate synthase alpha subunit from archaebacteria, or part of a large multidomain enzyme in other organisms. The aligned region of these proteins contains a putative FMN binding site and Fe-S cluster.; GO: 0015930 glutamate synthase activity, 0016638 oxidoreductase activity, acting on the CH-NH2 group of donors, 0006537 glutamate biosynthetic process, 0055114 oxidation-reduction process; PDB: 1EA0_A 2VDC_E 1OFE_A 1LLW_A 1OFD_A 1LLZ_A 1LM1_A. |
| >PF00834 Ribul_P_3_epim: Ribulose-phosphate 3 epimerase family; InterPro: IPR000056 Ribulose-phosphate 3-epimerase (5 | Back alignment and domain information |
|---|
Probab=98.96 E-value=4.2e-09 Score=92.14 Aligned_cols=145 Identities=20% Similarity=0.279 Sum_probs=102.4
Q ss_pred HHHHHHHhhcCCcEEEEeecCCCCHHHHHHHHhcCCcEEEEccCC--CcHHHHHHHHhCCCEEEEecC--CH-HHHHHHH
Q 020013 53 DLIRKTRSLTERPFGVGVVLAFPHNENIKAILSEKVAVLQVSWGE--YSEELVLEAHSAGVKVVPQVG--SF-DEARKAV 127 (332)
Q Consensus 53 ~~i~~~r~~~~~p~gvnl~~~~~~~~~~~~~~~~~~~~I~~~~g~--~~~~~i~~~~~~g~~v~~~v~--s~-~~a~~a~ 127 (332)
+.++.+|+.++.|+-|++++..| ..+++.+.+.|++.|.+|... .+.++++.+|+.|+++...+. ++ +.....
T Consensus 47 ~~i~~i~~~~~~~~DvHLMv~~P-~~~i~~~~~~g~~~i~~H~E~~~~~~~~i~~ik~~g~k~GialnP~T~~~~~~~~- 124 (201)
T PF00834_consen 47 DIIKAIRKITDLPLDVHLMVENP-ERYIEEFAEAGADYITFHAEATEDPKETIKYIKEAGIKAGIALNPETPVEELEPY- 124 (201)
T ss_dssp HHHHHHHTTSSSEEEEEEESSSG-GGHHHHHHHHT-SEEEEEGGGTTTHHHHHHHHHHTTSEEEEEE-TTS-GGGGTTT-
T ss_pred HHHHHHhhcCCCcEEEEeeeccH-HHHHHHHHhcCCCEEEEcccchhCHHHHHHHHHHhCCCEEEEEECCCCchHHHHH-
Confidence 34677788889999999999887 678999999999999999643 346788999999999775543 33 333333
Q ss_pred HcCCCEEEEecCCC--CcccCCCCchhhhHHHHHHHhC--CCCCcEEeecCcCCHHHHHHHHHcCcceeeeccccccC
Q 020013 128 NAGVDAIIVQGREA--GGHVIGQDGLISLLPMVVDLIG--DRDIPIIAAGGIVDARGYVAALSLGAQGICLGTRFVAS 201 (332)
Q Consensus 128 ~~g~D~ivv~G~ea--GGh~~~~~~~~~ll~~i~~~~~--~~~iPviaaGGI~~~~~v~~al~~GA~gV~~GT~fl~t 201 (332)
-.-+|.|.+-..+- ||+. -....+.-+.++++... +.++.+.+.||| +.+++..+.++|||.+++||.++.+
T Consensus 125 l~~vD~VlvMsV~PG~~Gq~-f~~~~~~KI~~l~~~~~~~~~~~~I~vDGGI-~~~~~~~~~~aGad~~V~Gs~iF~~ 200 (201)
T PF00834_consen 125 LDQVDMVLVMSVEPGFGGQK-FIPEVLEKIRELRKLIPENGLDFEIEVDGGI-NEENIKQLVEAGADIFVAGSAIFKA 200 (201)
T ss_dssp GCCSSEEEEESS-TTTSSB---HGGHHHHHHHHHHHHHHHTCGSEEEEESSE-STTTHHHHHHHT--EEEESHHHHTS
T ss_pred hhhcCEEEEEEecCCCCccc-ccHHHHHHHHHHHHHHHhcCCceEEEEECCC-CHHHHHHHHHcCCCEEEECHHHhCC
Confidence 33699999865544 4443 11244555555555442 135889999999 7899999999999999999987643
|
1.3.1 from EC) (also known as pentose-5-phosphate 3-epimerase or PPE) is the enzyme that converts D-ribulose 5-phosphate into D-xylulose 5-phosphate in Calvin's reductive pentose phosphate cycle. In Ralstonia eutropha (Alcaligenes eutrophus) two copies of the gene coding for PPE are known [], one is chromosomally encoded P40117 from SWISSPROT, the other one is on a plasmid Q04539 from SWISSPROT. PPE has been found in a wide range of bacteria, archaebacteria, fungi and plants. All the proteins have from 209 to 241 amino acid residues. The enzyme has a TIM barrel structure.; GO: 0004750 ribulose-phosphate 3-epimerase activity, 0005975 carbohydrate metabolic process; PDB: 3CTL_A 3CT7_D 3CU2_A 1RPX_A 3OVR_A 3OVP_A 3OVQ_B 3QC3_B 3INP_A 1TQJ_D .... |
| >PRK08091 ribulose-phosphate 3-epimerase; Validated | Back alignment and domain information |
|---|
Probab=98.96 E-value=3.5e-08 Score=87.60 Aligned_cols=140 Identities=10% Similarity=0.034 Sum_probs=102.9
Q ss_pred HHHHHhhcCCcEEEEeecCCCCHHHHHHHHhcCCcEEEEccCC--CcHHHHHHHHhCCC--EEEEec---CCHHHHHHHH
Q 020013 55 IRKTRSLTERPFGVGVVLAFPHNENIKAILSEKVAVLQVSWGE--YSEELVLEAHSAGV--KVVPQV---GSFDEARKAV 127 (332)
Q Consensus 55 i~~~r~~~~~p~gvnl~~~~~~~~~~~~~~~~~~~~I~~~~g~--~~~~~i~~~~~~g~--~v~~~v---~s~~~a~~a~ 127 (332)
++.+++ +.|+-|++++..| +++++.+.++|++.|.+|+.. .+.+.++.+|+.|+ +....+ ++++.....+
T Consensus 62 i~~i~~--~~~~DvHLMv~~P-~~~i~~~~~aGad~It~H~Ea~~~~~~~l~~Ik~~g~~~kaGlalnP~Tp~~~i~~~l 138 (228)
T PRK08091 62 IKQFPT--HCFKDVHLMVRDQ-FEVAKACVAAGADIVTLQVEQTHDLALTIEWLAKQKTTVLIGLCLCPETPISLLEPYL 138 (228)
T ss_pred HHHhCC--CCCEEEEeccCCH-HHHHHHHHHhCCCEEEEcccCcccHHHHHHHHHHCCCCceEEEEECCCCCHHHHHHHH
Confidence 444443 6799999999887 678999999999999999752 24578889999998 765443 3455555444
Q ss_pred HcCCCEEEEe--cCCCCcccCCCCchhhhHHHHHHHhCC--CCCcEEeecCcCCHHHHHHHHHcCcceeeecccccc
Q 020013 128 NAGVDAIIVQ--GREAGGHVIGQDGLISLLPMVVDLIGD--RDIPIIAAGGIVDARGYVAALSLGAQGICLGTRFVA 200 (332)
Q Consensus 128 ~~g~D~ivv~--G~eaGGh~~~~~~~~~ll~~i~~~~~~--~~iPviaaGGI~~~~~v~~al~~GA~gV~~GT~fl~ 200 (332)
. -+|.|.+- .+..||.. .....+..+.++++..++ .++.|-+.||| +.+++..+.++|||.+++||++..
T Consensus 139 ~-~vD~VLiMtV~PGfgGQ~-f~~~~l~KI~~lr~~~~~~~~~~~IeVDGGI-~~~ti~~l~~aGaD~~V~GSalF~ 212 (228)
T PRK08091 139 D-QIDLIQILTLDPRTGTKA-PSDLILDRVIQVENRLGNRRVEKLISIDGSM-TLELASYLKQHQIDWVVSGSALFS 212 (228)
T ss_pred h-hcCEEEEEEECCCCCCcc-ccHHHHHHHHHHHHHHHhcCCCceEEEECCC-CHHHHHHHHHCCCCEEEEChhhhC
Confidence 4 58999874 44445554 223456666666665432 24669999999 899999999999999999999764
|
|
| >PF01180 DHO_dh: Dihydroorotate dehydrogenase; InterPro: IPR012135 Dihydroorotate dehydrogenase (DHOD), also known as dihydroorotate oxidase, catalyses the fourth step in de novo pyrimidine biosynthesis, the stereospecific oxidation of (S)-dihydroorotate to orotate, which is the only redox reaction in this pathway | Back alignment and domain information |
|---|
Probab=98.95 E-value=6.4e-09 Score=96.73 Aligned_cols=188 Identities=19% Similarity=0.245 Sum_probs=107.5
Q ss_pred CccceecCCCCCCCCcHHHHHHHHhCCCceeecCCC----------------------------CCC--HHHHHHHHHHH
Q 020013 9 FEYGIVQAPLGPDISGPELVAAVANAGGLGLLRAPD----------------------------WEA--PDYLRDLIRKT 58 (332)
Q Consensus 9 ~~~Pii~apM~~g~s~~~la~avs~aGglG~i~~~~----------------------------~~~--~e~~~~~i~~~ 58 (332)
++.||+.+. + -..+.+......++| +|++..++ +.+ .+.+.+.+...
T Consensus 11 l~nPi~~as-G-~~~~~~~~~~~~~~G-~Gavv~ksvt~~~~~gn~~pr~~~~~~~~~~~n~~G~~n~g~~~~~~~~~~~ 87 (295)
T PF01180_consen 11 LKNPIGLAS-G-LDKNGEEIKRLFDAG-FGAVVTKSVTPEPREGNPEPRIFRLPEGESILNSMGLPNPGLEYYLERLRPI 87 (295)
T ss_dssp ESSSEEE-T-T-SSTSSHHHHHHHHHS-SSEEEEEEE-SSGB--SSSS-EEEETTETEEEE---S-BSHHHHHHHHHHHT
T ss_pred cCCCcEECC-c-CCCCchhhhhhhcCC-ccEEEeccccccccccccCCcEEeeccccccccccCCChHHHHHHHHHHHHH
Confidence 678999875 2 244556666677777 77763211 001 12233333332
Q ss_pred Hhh----cCCcEEEEeecCCC--CHHHHHHH--HhcCCcEEEEccCCCc----------HH----HHHHHHh-CCCEEEE
Q 020013 59 RSL----TERPFGVGVVLAFP--HNENIKAI--LSEKVAVLQVSWGEYS----------EE----LVLEAHS-AGVKVVP 115 (332)
Q Consensus 59 r~~----~~~p~gvnl~~~~~--~~~~~~~~--~~~~~~~I~~~~g~~~----------~~----~i~~~~~-~g~~v~~ 115 (332)
+.. .+.|+.+++..... .+++.+.+ ++.++|++.+++.+|. ++ +++.+++ ..++++.
T Consensus 88 ~~~~~~~~~~pvi~Si~~~~~~~~~d~~~~a~~~~~~ad~lElN~ScPn~~~~~~~~~~~~~~~~i~~~v~~~~~~Pv~v 167 (295)
T PF01180_consen 88 LKEAKKDVDIPVIASINGDSEEEIEDWAELAKRLEAGADALELNLSCPNVPGGRPFGQDPELVAEIVRAVREAVDIPVFV 167 (295)
T ss_dssp HHHTTCH-CEEEEEEE-TSSSGHHHHHHHHHHHHHHHCSEEEEESTSTTSTTSGGGGGHHHHHHHHHHHHHHHHSSEEEE
T ss_pred hhhcccccceeEEEEeecCCchhHHHHHHHHHHhcCcCCceEEEeeccCCCCccccccCHHHHHHHHHHHHhccCCCEEE
Confidence 222 13455666555431 13444333 2378999999876531 12 2233333 3788887
Q ss_pred ecC----CHH---HHHHHHHcCCCEEEEecC---------C---------CCcccCCC-C--chhhhHHHHHHHhCCCCC
Q 020013 116 QVG----SFD---EARKAVNAGVDAIIVQGR---------E---------AGGHVIGQ-D--GLISLLPMVVDLIGDRDI 167 (332)
Q Consensus 116 ~v~----s~~---~a~~a~~~g~D~ivv~G~---------e---------aGGh~~~~-~--~~~~ll~~i~~~~~~~~i 167 (332)
+++ +.. .+..+.+.|+|+|++.++ + .||.. |+ . ..+..+.++++.++. ++
T Consensus 168 KL~p~~~~~~~~~~~~~~~~~g~~gi~~~Nt~~~~~~id~~~~~~~~~~~~gGlS-G~~i~p~aL~~V~~~~~~~~~-~i 245 (295)
T PF01180_consen 168 KLSPNFTDIEPFAIAAELAADGADGIVAINTFGQGDAIDLETRRPVLGNGFGGLS-GPAIRPIALRWVRELRKALGQ-DI 245 (295)
T ss_dssp EE-STSSCHHHHHHHHHHHTHTECEEEE---EEEEE-EETTTTEESSSGGEEEEE-EGGGHHHHHHHHHHHHHHTTT-SS
T ss_pred EecCCCCchHHHHHHHHhhccceeEEEEecCccCcccccchhcceeeccccCCcC-chhhhhHHHHHHHHHHhcccc-ce
Confidence 765 332 233445789999995332 1 12222 22 1 236667778877732 59
Q ss_pred cEEeecCcCCHHHHHHHHHcCcceeeeccccccC
Q 020013 168 PIIAAGGIVDARGYVAALSLGAQGICLGTRFVAS 201 (332)
Q Consensus 168 PviaaGGI~~~~~v~~al~~GA~gV~~GT~fl~t 201 (332)
|||+.|||.|++|+.+++.+||+.||++|+++..
T Consensus 246 ~Iig~GGI~s~~da~e~l~aGA~~Vqv~Sal~~~ 279 (295)
T PF01180_consen 246 PIIGVGGIHSGEDAIEFLMAGASAVQVCSALIYR 279 (295)
T ss_dssp EEEEESS--SHHHHHHHHHHTESEEEESHHHHHH
T ss_pred EEEEeCCcCCHHHHHHHHHhCCCHheechhhhhc
Confidence 9999999999999999999999999999999654
|
DHODs can be divided into two mains classes: class 1 cytosolic enzymes found primarily in Gram-positive bacteria, and class 2 membrane-associated enzymes found primarily in eukaryotic mitochondria and Gram-negative bacteria []. The class 1 DHODs can be further divided into subclasses 1A and 1B, which differ in their structural organisation and use of electron acceptors. The 1A enzyme is a homodimer of two PyrD subunits where each subunit forms a TIM barrel fold with a bound FMN cofactor located near the top of the barrel []. Fumarate is the natural electron acceptor for this enzyme. The 1B enzyme, in contrast is a heterotetramer composed of a central, FMN-containing, PyrD homodimer resembling the 1A homodimer, and two additional PyrK subunits which contain FAD and a 2Fe-2S cluster []. These additional groups allow the enzyme to use NAD(+) as its natural electron acceptor. The class 2 membrane-associated enzymes are monomers which have the FMN-containing TIM barrel domain found in the class 1 PyrD subunit, and an additional N-terminal alpha helical domain [, ]. These enzymes use respiratory quinones as the physiological electron acceptor. This entry represents the FMN-binding subunit common to all classes of dihydroorotate dehydrogenase.; GO: 0004152 dihydroorotate dehydrogenase activity, 0006222 UMP biosynthetic process, 0055114 oxidation-reduction process; PDB: 3GYE_A 3GZ3_A 3MHU_B 3MJY_A 3TQ0_A 2B4G_C 1EP3_A 1EP2_A 1EP1_A 3I6R_A .... |
| >cd04732 HisA HisA | Back alignment and domain information |
|---|
Probab=98.95 E-value=4.3e-08 Score=87.92 Aligned_cols=171 Identities=23% Similarity=0.288 Sum_probs=109.8
Q ss_pred HHHHHHHHhCCC--ceeecCCC-CCCHHHHHHHHHHHHhhcCCcEEEEeecCCCCHHHHHHHHhcCCcEEEEccCC-CcH
Q 020013 25 PELVAAVANAGG--LGLLRAPD-WEAPDYLRDLIRKTRSLTERPFGVGVVLAFPHNENIKAILSEKVAVLQVSWGE-YSE 100 (332)
Q Consensus 25 ~~la~avs~aGg--lG~i~~~~-~~~~e~~~~~i~~~r~~~~~p~gvnl~~~~~~~~~~~~~~~~~~~~I~~~~g~-~~~ 100 (332)
.+++....+.|. +-++.... +.....-...++++++..+.|+-++=-+.. .+.++.+++.|+|.|.+.... ..+
T Consensus 32 ~~~a~~~~~~g~d~l~v~dl~~~~~~~~~~~~~i~~i~~~~~~pv~~~GgI~~--~e~~~~~~~~Gad~vvigs~~l~dp 109 (234)
T cd04732 32 VEVAKKWEEAGAKWLHVVDLDGAKGGEPVNLELIEEIVKAVGIPVQVGGGIRS--LEDIERLLDLGVSRVIIGTAAVKNP 109 (234)
T ss_pred HHHHHHHHHcCCCEEEEECCCccccCCCCCHHHHHHHHHhcCCCEEEeCCcCC--HHHHHHHHHcCCCEEEECchHHhCh
Confidence 356666666553 33332211 111111234566666666677766543332 466778888999998875321 112
Q ss_pred HHHHHH-HhCCC-EEEEec-----------------CCH-HHHHHHHHcCCCEEEEecCCCCcccCCCCchhhhHHHHHH
Q 020013 101 ELVLEA-HSAGV-KVVPQV-----------------GSF-DEARKAVNAGVDAIIVQGREAGGHVIGQDGLISLLPMVVD 160 (332)
Q Consensus 101 ~~i~~~-~~~g~-~v~~~v-----------------~s~-~~a~~a~~~g~D~ivv~G~eaGGh~~~~~~~~~ll~~i~~ 160 (332)
++++.+ +..+. +++..+ .+. +-++...+.|+|.+++.+....|...+ ..+.+++++++
T Consensus 110 ~~~~~i~~~~g~~~i~~sid~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ga~~iii~~~~~~g~~~g--~~~~~i~~i~~ 187 (234)
T cd04732 110 ELVKELLKEYGGERIVVGLDAKDGKVATKGWLETSEVSLEELAKRFEELGVKAIIYTDISRDGTLSG--PNFELYKELAA 187 (234)
T ss_pred HHHHHHHHHcCCceEEEEEEeeCCEEEECCCeeecCCCHHHHHHHHHHcCCCEEEEEeecCCCccCC--CCHHHHHHHHH
Confidence 334433 33333 333221 122 445667788999999987655554322 45888999988
Q ss_pred HhCCCCCcEEeecCcCCHHHHHHHHHcCcceeeeccccccCc
Q 020013 161 LIGDRDIPIIAAGGIVDARGYVAALSLGAQGICLGTRFVASE 202 (332)
Q Consensus 161 ~~~~~~iPviaaGGI~~~~~v~~al~~GA~gV~~GT~fl~t~ 202 (332)
.. ++||++.|||.+.+++.+++..||+||++||+|+..+
T Consensus 188 ~~---~ipvi~~GGi~~~~di~~~~~~Ga~gv~vg~~~~~~~ 226 (234)
T cd04732 188 AT---GIPVIASGGVSSLDDIKALKELGVAGVIVGKALYEGK 226 (234)
T ss_pred hc---CCCEEEecCCCCHHHHHHHHHCCCCEEEEeHHHHcCC
Confidence 76 7999999999999999999999999999999998664
|
Phosphoribosylformimino-5-aminoimidazole carboxamide ribonucleotide (ProFAR) isomerase catalyzes the fourth step in histidine biosynthesis, an isomerisation of the aminoaldose moiety of ProFAR to the aminoketose of PRFAR (N-(5'-phospho-D-1'-ribulosylformimino)-5-amino-1-(5''-phospho-ribosyl)-4-imidazolecarboxamide). In bacteria and archaea, ProFAR isomerase is encoded by the HisA gene. |
| >cd04728 ThiG Thiazole synthase (ThiG) is the tetrameric enzyme that is involved in the formation of the thiazole moiety of thiamin pyrophosphate, an essential ubiquitous cofactor that plays an important role in carbohydrate and amino acid metabolism | Back alignment and domain information |
|---|
Probab=98.94 E-value=7.9e-09 Score=91.45 Aligned_cols=112 Identities=22% Similarity=0.301 Sum_probs=82.1
Q ss_pred HHHHHHHHhC---CCEEEEe-cCCHHHHHHHHHcCCCEEEEecCCCCcccCCCCchhhhHHHHHHHhCCCCCcEEeecCc
Q 020013 100 EELVLEAHSA---GVKVVPQ-VGSFDEARKAVNAGVDAIIVQGREAGGHVIGQDGLISLLPMVVDLIGDRDIPIIAAGGI 175 (332)
Q Consensus 100 ~~~i~~~~~~---g~~v~~~-v~s~~~a~~a~~~g~D~ivv~G~eaGGh~~~~~~~~~ll~~i~~~~~~~~iPviaaGGI 175 (332)
.+.++..+.. |..+++. ..++..++++.+.|||+|-.-|..-|... + .....++..+++.. ++|||+.|||
T Consensus 110 ~~tv~aa~~L~~~Gf~vlpyc~dd~~~ar~l~~~G~~~vmPlg~pIGsg~-G-i~~~~~I~~I~e~~---~vpVI~egGI 184 (248)
T cd04728 110 IETLKAAEILVKEGFTVLPYCTDDPVLAKRLEDAGCAAVMPLGSPIGSGQ-G-LLNPYNLRIIIERA---DVPVIVDAGI 184 (248)
T ss_pred HHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHcCCCEeCCCCcCCCCCC-C-CCCHHHHHHHHHhC---CCcEEEeCCC
Confidence 4566666554 9999954 56899999999999999955333333222 2 23477788887764 7999999999
Q ss_pred CCHHHHHHHHHcCcceeeeccccccCccCC-CCHHHHHHHhc
Q 020013 176 VDARGYVAALSLGAQGICLGTRFVASEESY-AHPEYKRKLVE 216 (332)
Q Consensus 176 ~~~~~v~~al~~GA~gV~~GT~fl~t~Es~-~~~~~k~~~~~ 216 (332)
++++++.+++.+|||||.+||++..+++-. ....|+.++..
T Consensus 185 ~tpeda~~AmelGAdgVlV~SAIt~a~dP~~ma~af~~Av~a 226 (248)
T cd04728 185 GTPSDAAQAMELGADAVLLNTAIAKAKDPVAMARAFKLAVEA 226 (248)
T ss_pred CCHHHHHHHHHcCCCEEEEChHhcCCCCHHHHHHHHHHHHHH
Confidence 999999999999999999999998544322 23455555543
|
ThiG catalyzes the formation of thiazole from 1-deoxy-D-xylulose 5-phosphate (DXP) and dehydroglycine, with the help of the sulfur carrier protein ThiS that carries the sulfur needed for thiazole assembly on its carboxy terminus (ThiS-COSH). |
| >PF00290 Trp_syntA: Tryptophan synthase alpha chain; InterPro: IPR002028 Tryptophan synthase (4 | Back alignment and domain information |
|---|
Probab=98.93 E-value=1.6e-08 Score=91.47 Aligned_cols=153 Identities=20% Similarity=0.278 Sum_probs=98.3
Q ss_pred CHHHHHHHHHHHH-hhcCCcEEE----EeecCCCCHHHHHHHHhcCCcEEEEccCCCc---HHHHHHHHhCCCEEEEecC
Q 020013 47 APDYLRDLIRKTR-SLTERPFGV----GVVLAFPHNENIKAILSEKVAVLQVSWGEYS---EELVLEAHSAGVKVVPQVG 118 (332)
Q Consensus 47 ~~e~~~~~i~~~r-~~~~~p~gv----nl~~~~~~~~~~~~~~~~~~~~I~~~~g~~~---~~~i~~~~~~g~~v~~~v~ 118 (332)
+.+.+-++++++| +..+.|+-+ |.+.....+.+++.+.+.|++.+.+. +.|+ .++.+.+++.|+..+.-++
T Consensus 70 ~~~~~~~~~~~ir~~~~~~pivlm~Y~N~i~~~G~e~F~~~~~~aGvdGlIip-DLP~ee~~~~~~~~~~~gl~~I~lv~ 148 (259)
T PF00290_consen 70 TLEKIFELVKEIRKKEPDIPIVLMTYYNPIFQYGIERFFKEAKEAGVDGLIIP-DLPPEESEELREAAKKHGLDLIPLVA 148 (259)
T ss_dssp -HHHHHHHHHHHHHHCTSSEEEEEE-HHHHHHH-HHHHHHHHHHHTEEEEEET-TSBGGGHHHHHHHHHHTT-EEEEEEE
T ss_pred CHHHHHHHHHHHhccCCCCCEEEEeeccHHhccchHHHHHHHHHcCCCEEEEc-CCChHHHHHHHHHHHHcCCeEEEEEC
Confidence 4455667778888 556777654 22222223567888999999999987 4433 3556667788988775543
Q ss_pred ---CHHHHHHHHHcCCCEEEEecCCC-CcccCC-CCchhhhHHHHHHHhCCCCCcEEeecCcCCHHHHHHHHHcCcceee
Q 020013 119 ---SFDEARKAVNAGVDAIIVQGREA-GGHVIG-QDGLISLLPMVVDLIGDRDIPIIAAGGIVDARGYVAALSLGAQGIC 193 (332)
Q Consensus 119 ---s~~~a~~a~~~g~D~ivv~G~ea-GGh~~~-~~~~~~ll~~i~~~~~~~~iPviaaGGI~~~~~v~~al~~GA~gV~ 193 (332)
+.+..+...+..-.+|-+....+ .|.... ......++..+++.. ++||++.-||++++++.++. .|||||+
T Consensus 149 p~t~~~Ri~~i~~~a~gFiY~vs~~GvTG~~~~~~~~l~~~i~~ik~~~---~~Pv~vGFGI~~~e~~~~~~-~~aDGvI 224 (259)
T PF00290_consen 149 PTTPEERIKKIAKQASGFIYLVSRMGVTGSRTELPDELKEFIKRIKKHT---DLPVAVGFGISTPEQAKKLA-AGADGVI 224 (259)
T ss_dssp TTS-HHHHHHHHHH-SSEEEEESSSSSSSTTSSCHHHHHHHHHHHHHTT---SS-EEEESSS-SHHHHHHHH-TTSSEEE
T ss_pred CCCCHHHHHHHHHhCCcEEEeeccCCCCCCcccchHHHHHHHHHHHhhc---CcceEEecCCCCHHHHHHHH-ccCCEEE
Confidence 34555555555556666544321 222111 123456677777665 79999999999999999888 9999999
Q ss_pred eccccccCccC
Q 020013 194 LGTRFVASEES 204 (332)
Q Consensus 194 ~GT~fl~t~Es 204 (332)
+||+|+..-+.
T Consensus 225 VGSa~v~~i~~ 235 (259)
T PF00290_consen 225 VGSAFVKIIEE 235 (259)
T ss_dssp ESHHHHHHHHH
T ss_pred ECHHHHHHHHH
Confidence 99999977553
|
2.1.20 from EC) catalyzes the last step in the biosynthesis of tryptophan [, ]: |
| >PRK13585 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional | Back alignment and domain information |
|---|
Probab=98.93 E-value=4.1e-08 Score=88.58 Aligned_cols=171 Identities=21% Similarity=0.291 Sum_probs=110.1
Q ss_pred HHHHHHHHhCCCceeecCCCCC----CHHHHHHHHHHHHhhcCCcEEEEeecCCCCHHHHHHHHhcCCcEEEEccCCC-c
Q 020013 25 PELVAAVANAGGLGLLRAPDWE----APDYLRDLIRKTRSLTERPFGVGVVLAFPHNENIKAILSEKVAVLQVSWGEY-S 99 (332)
Q Consensus 25 ~~la~avs~aGglG~i~~~~~~----~~e~~~~~i~~~r~~~~~p~gvnl~~~~~~~~~~~~~~~~~~~~I~~~~g~~-~ 99 (332)
.+++...++.| +-.+...... ........++++.+..+.|+-+|=-+. ..+.++.+++.|++.|.++.... .
T Consensus 35 ~e~a~~~~~~G-~~~l~i~dl~~~~~~~~~~~~~i~~i~~~~~~~l~v~GGi~--~~~~~~~~~~~Ga~~v~iGs~~~~~ 111 (241)
T PRK13585 35 VEVAKRWVDAG-AETLHLVDLDGAFEGERKNAEAIEKIIEAVGVPVQLGGGIR--SAEDAASLLDLGVDRVILGTAAVEN 111 (241)
T ss_pred HHHHHHHHHcC-CCEEEEEechhhhcCCcccHHHHHHHHHHcCCcEEEcCCcC--CHHHHHHHHHcCCCEEEEChHHhhC
Confidence 35666666655 3333221111 111223345555554556666642222 24667888899999998863221 2
Q ss_pred HHHHHHHHh-CCC-EEEEec------------------CCHHHHHHHHHcCCCEEEEecCCCCcccCCCCchhhhHHHHH
Q 020013 100 EELVLEAHS-AGV-KVVPQV------------------GSFDEARKAVNAGVDAIIVQGREAGGHVIGQDGLISLLPMVV 159 (332)
Q Consensus 100 ~~~i~~~~~-~g~-~v~~~v------------------~s~~~a~~a~~~g~D~ivv~G~eaGGh~~~~~~~~~ll~~i~ 159 (332)
++.++.+.+ .+- ++++.+ ...+.++.+.+.|+|.|++.+.+..|+..+ ..+.++.++.
T Consensus 112 ~~~~~~i~~~~g~~~i~~sid~~~~~v~~~g~~~~~~~~~~~~~~~~~~~G~~~i~~~~~~~~g~~~g--~~~~~i~~i~ 189 (241)
T PRK13585 112 PEIVRELSEEFGSERVMVSLDAKDGEVVIKGWTEKTGYTPVEAAKRFEELGAGSILFTNVDVEGLLEG--VNTEPVKELV 189 (241)
T ss_pred hHHHHHHHHHhCCCcEEEEEEeeCCEEEECCCcccCCCCHHHHHHHHHHcCCCEEEEEeecCCCCcCC--CCHHHHHHHH
Confidence 234444433 221 232221 224667788889999999988765555322 3577888888
Q ss_pred HHhCCCCCcEEeecCcCCHHHHHHHHHcCcceeeeccccccCcc
Q 020013 160 DLIGDRDIPIIAAGGIVDARGYVAALSLGAQGICLGTRFVASEE 203 (332)
Q Consensus 160 ~~~~~~~iPviaaGGI~~~~~v~~al~~GA~gV~~GT~fl~t~E 203 (332)
+.+ ++||++.|||.+.+++.+++.+||+||++||+++....
T Consensus 190 ~~~---~iPvia~GGI~~~~di~~~~~~Ga~gv~vgsa~~~~~~ 230 (241)
T PRK13585 190 DSV---DIPVIASGGVTTLDDLRALKEAGAAGVVVGSALYKGKF 230 (241)
T ss_pred HhC---CCCEEEeCCCCCHHHHHHHHHcCCCEEEEEHHHhcCCc
Confidence 877 79999999999999999999999999999999988766
|
|
| >PRK00208 thiG thiazole synthase; Reviewed | Back alignment and domain information |
|---|
Probab=98.91 E-value=1.2e-08 Score=90.38 Aligned_cols=112 Identities=22% Similarity=0.296 Sum_probs=82.0
Q ss_pred HHHHHHHHhC---CCEEEE-ecCCHHHHHHHHHcCCCEEEEecCCCCcccCCCCchhhhHHHHHHHhCCCCCcEEeecCc
Q 020013 100 EELVLEAHSA---GVKVVP-QVGSFDEARKAVNAGVDAIIVQGREAGGHVIGQDGLISLLPMVVDLIGDRDIPIIAAGGI 175 (332)
Q Consensus 100 ~~~i~~~~~~---g~~v~~-~v~s~~~a~~a~~~g~D~ivv~G~eaGGh~~~~~~~~~ll~~i~~~~~~~~iPviaaGGI 175 (332)
.+.++..+.. |..+++ ...++..++++.+.|||+|-.-|..-|+.. + .....++..+++.. ++|||+.|||
T Consensus 110 ~~tv~aa~~L~~~Gf~vlpyc~~d~~~ak~l~~~G~~~vmPlg~pIGsg~-g-i~~~~~i~~i~e~~---~vpVIveaGI 184 (250)
T PRK00208 110 IETLKAAEILVKEGFVVLPYCTDDPVLAKRLEEAGCAAVMPLGAPIGSGL-G-LLNPYNLRIIIEQA---DVPVIVDAGI 184 (250)
T ss_pred HHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHcCCCEeCCCCcCCCCCC-C-CCCHHHHHHHHHhc---CCeEEEeCCC
Confidence 3566666554 999995 456899999999999999954333323222 2 22366677777764 7999999999
Q ss_pred CCHHHHHHHHHcCcceeeeccccccCccCC-CCHHHHHHHhc
Q 020013 176 VDARGYVAALSLGAQGICLGTRFVASEESY-AHPEYKRKLVE 216 (332)
Q Consensus 176 ~~~~~v~~al~~GA~gV~~GT~fl~t~Es~-~~~~~k~~~~~ 216 (332)
++++++.+++.+|||||.+||++..++.-. ....|++++..
T Consensus 185 ~tpeda~~AmelGAdgVlV~SAItka~dP~~ma~af~~Av~a 226 (250)
T PRK00208 185 GTPSDAAQAMELGADAVLLNTAIAVAGDPVAMARAFKLAVEA 226 (250)
T ss_pred CCHHHHHHHHHcCCCEEEEChHhhCCCCHHHHHHHHHHHHHH
Confidence 999999999999999999999998543322 24555655554
|
|
| >PLN02460 indole-3-glycerol-phosphate synthase | Back alignment and domain information |
|---|
Probab=98.90 E-value=7.3e-08 Score=89.74 Aligned_cols=172 Identities=15% Similarity=0.200 Sum_probs=116.0
Q ss_pred HHHHHHHhCCC--ceeecCCCCC--CHHHHHHHHHHHHhh-cCCcEEEEeecCCCCHHHHHHHHhcCCcEEEEccCCCc-
Q 020013 26 ELVAAVANAGG--LGLLRAPDWE--APDYLRDLIRKTRSL-TERPFGVGVVLAFPHNENIKAILSEKVAVLQVSWGEYS- 99 (332)
Q Consensus 26 ~la~avs~aGg--lG~i~~~~~~--~~e~~~~~i~~~r~~-~~~p~gvnl~~~~~~~~~~~~~~~~~~~~I~~~~g~~~- 99 (332)
++|.+..++|. +.++.-..|. +.+. ++++|+. ++.|+-..=|+.+ .-++..+...|+|+|.+-....+
T Consensus 143 ~iA~~Ye~~GA~aISVLTd~~~F~Gs~e~----L~~vr~~~v~lPvLrKDFIID--~yQI~eAr~~GADAVLLIaaiL~~ 216 (338)
T PLN02460 143 EIAQAYEKGGAACLSVLTDEKYFQGSFEN----LEAIRNAGVKCPLLCKEFIVD--AWQIYYARSKGADAILLIAAVLPD 216 (338)
T ss_pred HHHHHHHhCCCcEEEEecCcCcCCCCHHH----HHHHHHcCCCCCEeeccccCC--HHHHHHHHHcCCCcHHHHHHhCCH
Confidence 45555555453 4554332221 3444 4566665 6777665444432 45778888899999977544333
Q ss_pred ---HHHHHHHHhCCCEEEEecCCHHHHHHHHHc-CCCEEEEecCCCCcccCCCCchhhhHHHHH-HHhCCCCCcEEeecC
Q 020013 100 ---EELVLEAHSAGVKVVPQVGSFDEARKAVNA-GVDAIIVQGREAGGHVIGQDGLISLLPMVV-DLIGDRDIPIIAAGG 174 (332)
Q Consensus 100 ---~~~i~~~~~~g~~v~~~v~s~~~a~~a~~~-g~D~ivv~G~eaGGh~~~~~~~~~ll~~i~-~~~~~~~iPviaaGG 174 (332)
.++++..+..|+.++..|++.+|+..+.+. |++.|-+.++.-.........+..|++... +.++..++-+|+.+|
T Consensus 217 ~~L~~l~~~A~~LGme~LVEVH~~~ElerAl~~~ga~iIGINNRdL~Tf~vDl~~t~~L~~~~~~~~i~~~~~~~VsESG 296 (338)
T PLN02460 217 LDIKYMLKICKSLGMAALIEVHDEREMDRVLGIEGVELIGINNRSLETFEVDISNTKKLLEGERGEQIREKGIIVVGESG 296 (338)
T ss_pred HHHHHHHHHHHHcCCeEEEEeCCHHHHHHHHhcCCCCEEEEeCCCCCcceECHHHHHHHhhhccccccCCCCeEEEECCC
Confidence 356667778899999999999999999998 999999988754332211112333443110 012112566899999
Q ss_pred cCCHHHHHHHHHcCcceeeeccccccCcc
Q 020013 175 IVDARGYVAALSLGAQGICLGTRFVASEE 203 (332)
Q Consensus 175 I~~~~~v~~al~~GA~gV~~GT~fl~t~E 203 (332)
|.+++|+..+..+|+|+|.+|+.||.++.
T Consensus 297 I~t~~Dv~~l~~~GadAvLVGEsLMr~~d 325 (338)
T PLN02460 297 LFTPDDVAYVQNAGVKAVLVGESLVKQDD 325 (338)
T ss_pred CCCHHHHHHHHHCCCCEEEECHHHhCCCC
Confidence 99999999999999999999999998754
|
|
| >PRK07028 bifunctional hexulose-6-phosphate synthase/ribonuclease regulator; Validated | Back alignment and domain information |
|---|
Probab=98.90 E-value=1.3e-07 Score=92.54 Aligned_cols=178 Identities=22% Similarity=0.228 Sum_probs=114.4
Q ss_pred ceecCCCCCCCCcHHHHHHHHhC---CCceeecCCCCCCHH---HHHHHHHHHHhhcCCcEEEEe---ecCCCCHHHHHH
Q 020013 12 GIVQAPLGPDISGPELVAAVANA---GGLGLLRAPDWEAPD---YLRDLIRKTRSLTERPFGVGV---VLAFPHNENIKA 82 (332)
Q Consensus 12 Pii~apM~~g~s~~~la~avs~a---GglG~i~~~~~~~~e---~~~~~i~~~r~~~~~p~gvnl---~~~~~~~~~~~~ 82 (332)
|-+|-.+- ..+++-...+.+. +|+-.+..+ + +. ...+.++++++....++-+|- +.. + ...++.
T Consensus 4 ~~l~~alD--~~~~~~~~~~~~~~~~~Gv~~ie~g-~--p~~~~~~~~~i~~l~~~~~~~~ii~D~kl~d~-g-~~~v~~ 76 (430)
T PRK07028 4 PILQVALD--LLELDRAVEIAKEAVAGGADWIEAG-T--PLIKSEGMNAIRTLRKNFPDHTIVADMKTMDT-G-AIEVEM 76 (430)
T ss_pred ceEEEEec--cCCHHHHHHHHHHHHhcCCcEEEeC-C--HHHHHhhHHHHHHHHHHCCCCEEEEEeeeccc-h-HHHHHH
Confidence 44555554 3444444445554 778788652 2 22 123344555443333444432 111 2 347889
Q ss_pred HHhcCCcEEEEccCCC---cHHHHHHHHhCCCEEEEe---cCC-HHHHHHHHHcCCCEEEEecCCCCcccCCCCchhhhH
Q 020013 83 ILSEKVAVLQVSWGEY---SEELVLEAHSAGVKVVPQ---VGS-FDEARKAVNAGVDAIIVQGREAGGHVIGQDGLISLL 155 (332)
Q Consensus 83 ~~~~~~~~I~~~~g~~---~~~~i~~~~~~g~~v~~~---v~s-~~~a~~a~~~g~D~ivv~G~eaGGh~~~~~~~~~ll 155 (332)
+.+.+++.|+++...+ ..+.++.+++.|++++.. +.+ .+.++.+.+.|+|+|.+. +...+.. .....+..+
T Consensus 77 a~~aGAdgV~v~g~~~~~~~~~~i~~a~~~G~~~~~g~~s~~t~~e~~~~a~~~GaD~I~~~-pg~~~~~-~~~~~~~~l 154 (430)
T PRK07028 77 AAKAGADIVCILGLADDSTIEDAVRAARKYGVRLMADLINVPDPVKRAVELEELGVDYINVH-VGIDQQM-LGKDPLELL 154 (430)
T ss_pred HHHcCCCEEEEecCCChHHHHHHHHHHHHcCCEEEEEecCCCCHHHHHHHHHhcCCCEEEEE-eccchhh-cCCChHHHH
Confidence 9999999999863211 235667788899988763 333 566788889999999764 2111111 112335677
Q ss_pred HHHHHHhCCCCCcEEeecCcCCHHHHHHHHHcCcceeeeccccccCc
Q 020013 156 PMVVDLIGDRDIPIIAAGGIVDARGYVAALSLGAQGICLGTRFVASE 202 (332)
Q Consensus 156 ~~i~~~~~~~~iPviaaGGI~~~~~v~~al~~GA~gV~~GT~fl~t~ 202 (332)
+++++.. ++||++.||| +.+++.+++..||+++.+||.++..+
T Consensus 155 ~~l~~~~---~iPI~a~GGI-~~~n~~~~l~aGAdgv~vGsaI~~~~ 197 (430)
T PRK07028 155 KEVSEEV---SIPIAVAGGL-DAETAAKAVAAGADIVIVGGNIIKSA 197 (430)
T ss_pred HHHHhhC---CCcEEEECCC-CHHHHHHHHHcCCCEEEEChHHcCCC
Confidence 7777765 6999999999 79999999999999999999998753
|
|
| >PTZ00170 D-ribulose-5-phosphate 3-epimerase; Provisional | Back alignment and domain information |
|---|
Probab=98.87 E-value=5.7e-08 Score=86.89 Aligned_cols=144 Identities=15% Similarity=0.212 Sum_probs=102.9
Q ss_pred HHHHHHHhhc-CCcEEEEeecCCCCHHHHHHHHhcCCcEEEEccCCC---cHHHHHHHHhCCCEEEEecC---CHHHHHH
Q 020013 53 DLIRKTRSLT-ERPFGVGVVLAFPHNENIKAILSEKVAVLQVSWGEY---SEELVLEAHSAGVKVVPQVG---SFDEARK 125 (332)
Q Consensus 53 ~~i~~~r~~~-~~p~gvnl~~~~~~~~~~~~~~~~~~~~I~~~~g~~---~~~~i~~~~~~g~~v~~~v~---s~~~a~~ 125 (332)
+.++.+|+.+ +.|+-+.+++..+ ...++.+.+.|+|.|.+|+... +.+.++.+++.|.++...+. +.++...
T Consensus 54 ~~v~~lr~~~~~~~lDvHLm~~~p-~~~i~~~~~~Gad~itvH~ea~~~~~~~~l~~ik~~G~~~gval~p~t~~e~l~~ 132 (228)
T PTZ00170 54 PVVKSLRKHLPNTFLDCHLMVSNP-EKWVDDFAKAGASQFTFHIEATEDDPKAVARKIREAGMKVGVAIKPKTPVEVLFP 132 (228)
T ss_pred HHHHHHHhcCCCCCEEEEECCCCH-HHHHHHHHHcCCCEEEEeccCCchHHHHHHHHHHHCCCeEEEEECCCCCHHHHHH
Confidence 3466777766 7889999997766 5678899999999999996432 34667778888988775543 5566655
Q ss_pred HHH-cCCCEEEEecCCCC--cccCCCCchhhhHHHHHHHhCCCCCcEEeecCcCCHHHHHHHHHcCcceeeeccccccC
Q 020013 126 AVN-AGVDAIIVQGREAG--GHVIGQDGLISLLPMVVDLIGDRDIPIIAAGGIVDARGYVAALSLGAQGICLGTRFVAS 201 (332)
Q Consensus 126 a~~-~g~D~ivv~G~eaG--Gh~~~~~~~~~ll~~i~~~~~~~~iPviaaGGI~~~~~v~~al~~GA~gV~~GT~fl~t 201 (332)
..+ ..+|.|++-..+.| |... ....+..++++++..+ +..+.++||| +.+++..+..+|||.+++||++..+
T Consensus 133 ~l~~~~vD~Vl~m~v~pG~~gq~~-~~~~~~ki~~~~~~~~--~~~I~VdGGI-~~~ti~~~~~aGad~iVvGsaI~~a 207 (228)
T PTZ00170 133 LIDTDLVDMVLVMTVEPGFGGQSF-MHDMMPKVRELRKRYP--HLNIQVDGGI-NLETIDIAADAGANVIVAGSSIFKA 207 (228)
T ss_pred HHccchhhhHHhhhcccCCCCcEe-cHHHHHHHHHHHHhcc--cCeEEECCCC-CHHHHHHHHHcCCCEEEEchHHhCC
Confidence 543 34888865333322 3321 1234566677766543 4779999999 8999999999999999999997653
|
|
| >PRK13802 bifunctional indole-3-glycerol phosphate synthase/tryptophan synthase subunit beta; Provisional | Back alignment and domain information |
|---|
Probab=98.87 E-value=6.6e-08 Score=98.55 Aligned_cols=167 Identities=16% Similarity=0.198 Sum_probs=116.6
Q ss_pred HHHHHHHhCCC--ceeecCCCC--CCHHHHHHHHHHHHhhcCCcEEEEeecCCCCHHHHHHHHhcCCcEEEEccCCCc--
Q 020013 26 ELVAAVANAGG--LGLLRAPDW--EAPDYLRDLIRKTRSLTERPFGVGVVLAFPHNENIKAILSEKVAVLQVSWGEYS-- 99 (332)
Q Consensus 26 ~la~avs~aGg--lG~i~~~~~--~~~e~~~~~i~~~r~~~~~p~gvnl~~~~~~~~~~~~~~~~~~~~I~~~~g~~~-- 99 (332)
+++....++|. +.++.-+.+ -+.+. +..+|+.++.|+-..=|+. ++.++..+...|+|+|.+.....+
T Consensus 74 ~~a~~y~~~GA~aiSVlTe~~~F~Gs~~~----l~~vr~~v~~PvLrKDFIi--d~~QI~ea~~~GADavLLI~~~L~~~ 147 (695)
T PRK13802 74 ALAREYEQGGASAISVLTEGRRFLGSLDD----FDKVRAAVHIPVLRKDFIV--TDYQIWEARAHGADLVLLIVAALDDA 147 (695)
T ss_pred HHHHHHHHcCCcEEEEecCcCcCCCCHHH----HHHHHHhCCCCEEeccccC--CHHHHHHHHHcCCCEeehhHhhcCHH
Confidence 45555555553 555533222 23444 4556666677865543332 356788888999999988654333
Q ss_pred --HHHHHHHHhCCCEEEEecCCHHHHHHHHHcCCCEEEEecCCCCcccCCCCchhhhHHHHHHHhCCCCCcEEeecCcCC
Q 020013 100 --EELVLEAHSAGVKVVPQVGSFDEARKAVNAGVDAIIVQGREAGGHVIGQDGLISLLPMVVDLIGDRDIPIIAAGGIVD 177 (332)
Q Consensus 100 --~~~i~~~~~~g~~v~~~v~s~~~a~~a~~~g~D~ivv~G~eaGGh~~~~~~~~~ll~~i~~~~~~~~iPviaaGGI~~ 177 (332)
.++++..++.|+.++..|++.+|+.++.+.|++.|-+.++.--... ..+....++...++. ++.+|+.+||.+
T Consensus 148 ~l~~l~~~a~~lGme~LvEvh~~~el~~a~~~ga~iiGINnRdL~tf~----vd~~~t~~L~~~ip~-~~~~VsESGI~~ 222 (695)
T PRK13802 148 QLKHLLDLAHELGMTVLVETHTREEIERAIAAGAKVIGINARNLKDLK----VDVNKYNELAADLPD-DVIKVAESGVFG 222 (695)
T ss_pred HHHHHHHHHHHcCCeEEEEeCCHHHHHHHHhCCCCEEEEeCCCCccce----eCHHHHHHHHhhCCC-CcEEEEcCCCCC
Confidence 3556667788999999999999999999999999999776432211 112222233333332 678999999999
Q ss_pred HHHHHHHHHcCcceeeeccccccCcc
Q 020013 178 ARGYVAALSLGAQGICLGTRFVASEE 203 (332)
Q Consensus 178 ~~~v~~al~~GA~gV~~GT~fl~t~E 203 (332)
++|+..+..+|+|+|.+|++||.++.
T Consensus 223 ~~d~~~l~~~G~davLIGeslm~~~d 248 (695)
T PRK13802 223 AVEVEDYARAGADAVLVGEGVATADD 248 (695)
T ss_pred HHHHHHHHHCCCCEEEECHHhhCCCC
Confidence 99999999999999999999999854
|
|
| >TIGR03572 WbuZ glycosyl amidation-associated protein WbuZ | Back alignment and domain information |
|---|
Probab=98.85 E-value=1.4e-07 Score=84.68 Aligned_cols=139 Identities=27% Similarity=0.364 Sum_probs=93.5
Q ss_pred HHHHHHHhhcCCcEEEEeecCCCCHHHHHHHHhcCCcEEEEccCC-CcHHHHHHHHh-CCCE-EEE--ec----------
Q 020013 53 DLIRKTRSLTERPFGVGVVLAFPHNENIKAILSEKVAVLQVSWGE-YSEELVLEAHS-AGVK-VVP--QV---------- 117 (332)
Q Consensus 53 ~~i~~~r~~~~~p~gvnl~~~~~~~~~~~~~~~~~~~~I~~~~g~-~~~~~i~~~~~-~g~~-v~~--~v---------- 117 (332)
+.++++++.++.|+-++=-+. ..+.++.+.+.+++.|.++... ..+++++.+.+ .+.. ++. .+
T Consensus 64 ~~~~~i~~~~~~pv~~~ggi~--~~~d~~~~~~~G~~~vilg~~~l~~~~~~~~~~~~~~~~~i~vsld~~~~~~~~~~~ 141 (232)
T TIGR03572 64 ELISNLAEECFMPLTVGGGIR--SLEDAKKLLSLGADKVSINTAALENPDLIEEAARRFGSQCVVVSIDVKKELDGSDYK 141 (232)
T ss_pred HHHHHHHHhCCCCEEEECCCC--CHHHHHHHHHcCCCEEEEChhHhcCHHHHHHHHHHcCCceEEEEEEeccCCCCCcEE
Confidence 445666665666765532221 2445666777899998876321 12344444433 2221 221 11
Q ss_pred ------------CCHHHHHHHHHcCCCEEEEecCCCCcccCCCCchhhhHHHHHHHhCCCCCcEEeecCcCCHHHHHH-H
Q 020013 118 ------------GSFDEARKAVNAGVDAIIVQGREAGGHVIGQDGLISLLPMVVDLIGDRDIPIIAAGGIVDARGYVA-A 184 (332)
Q Consensus 118 ------------~s~~~a~~a~~~g~D~ivv~G~eaGGh~~~~~~~~~ll~~i~~~~~~~~iPviaaGGI~~~~~v~~-a 184 (332)
...+.++.+.+.|+|.|++.+.+..|+..+ ..+.++.++++.+ ++||+++|||.+.+++.+ +
T Consensus 142 v~~~~~~~~~~~~~~~~~~~~~~~G~d~i~i~~i~~~g~~~g--~~~~~~~~i~~~~---~ipvia~GGi~s~~di~~~l 216 (232)
T TIGR03572 142 VYSDNGRRATGRDPVEWAREAEQLGAGEILLNSIDRDGTMKG--YDLELIKTVSDAV---SIPVIALGGAGSLDDLVEVA 216 (232)
T ss_pred EEECCCcccCCCCHHHHHHHHHHcCCCEEEEeCCCccCCcCC--CCHHHHHHHHhhC---CCCEEEECCCCCHHHHHHHH
Confidence 124666788899999999998766555322 3478888888876 799999999999999999 6
Q ss_pred HHcCcceeeecccc
Q 020013 185 LSLGAQGICLGTRF 198 (332)
Q Consensus 185 l~~GA~gV~~GT~f 198 (332)
...||++|++||+|
T Consensus 217 ~~~gadgV~vg~a~ 230 (232)
T TIGR03572 217 LEAGASAVAAASLF 230 (232)
T ss_pred HHcCCCEEEEehhh
Confidence 67999999999997
|
This clade of sequences is highly similar to the HisF protein, but generally represents the second HisF homolog in the genome where the other is an authentic HisF observed in the context of a complete histidine biosynthesis operon. The similarity between these WbuZ sequences and true HisFs is such that often the closest match by BLAST of a WbuZ is a HisF. Only by making a multiple sequence alignment is the homology relationship among the WbuZ sequences made apparent. WbuZ genes are invariably observed in the presence of a homolog of the HisH protein (designated WbuY) and a proposed N-acetyl sugar amidotransferase designated in WbuX in E. coli, IfnA in P. aeriginosa and PseA in C. jejuni. Similarly, this trio of genes is invariably found in the context of saccharide biosynthesis loci. It has been shown that the WbuYZ homologs are not essential components of the activity expressed by WbuX, leading to the proposal that these to pr |
| >PRK13307 bifunctional formaldehyde-activating enzyme/3-hexulose-6-phosphate synthase; Provisional | Back alignment and domain information |
|---|
Probab=98.85 E-value=1.7e-07 Score=89.59 Aligned_cols=183 Identities=16% Similarity=0.141 Sum_probs=124.7
Q ss_pred ccceecCCCCCCCCcHHHHHHHHhC-CC--ceeecCCCCCCHHHH-HHHHHHHHhh-cCCcEEEEeecCCCCHHHHHHHH
Q 020013 10 EYGIVQAPLGPDISGPELVAAVANA-GG--LGLLRAPDWEAPDYL-RDLIRKTRSL-TERPFGVGVVLAFPHNENIKAIL 84 (332)
Q Consensus 10 ~~Pii~apM~~g~s~~~la~avs~a-Gg--lG~i~~~~~~~~e~~-~~~i~~~r~~-~~~p~gvnl~~~~~~~~~~~~~~ 84 (332)
+.|.+|-.+. ..+.+-+..+.+. +. .+++..+ +.-.-.. -+.++.+++. ++.++-+.+.+.++..-.++.+.
T Consensus 171 ~~p~L~vALD--~~~~~~A~~i~~~l~~~~~~~iKvG-~~L~~~~G~~iVk~Lr~~~~~~~I~~DLK~~Di~~~vv~~~a 247 (391)
T PRK13307 171 DPPYLQVALD--LPDLEEVERVLSQLPKSDHIIIEAG-TPLIKKFGLEVISKIREVRPDAFIVADLKTLDTGNLEARMAA 247 (391)
T ss_pred ccceEEEecC--CCCHHHHHHHHHhcccccceEEEEC-HHHHHHhCHHHHHHHHHhCCCCeEEEEecccChhhHHHHHHH
Confidence 3588888885 5666666666543 32 4555443 1000000 2346667665 56789999998876443477888
Q ss_pred hcCCcEEEEccCCC---cHHHHHHHHhCCCEEEEe---cCCHHHHHHHHHcCCCEEEEe-cCCCCcccCCCCchhhhHHH
Q 020013 85 SEKVAVLQVSWGEY---SEELVLEAHSAGVKVVPQ---VGSFDEARKAVNAGVDAIIVQ-GREAGGHVIGQDGLISLLPM 157 (332)
Q Consensus 85 ~~~~~~I~~~~g~~---~~~~i~~~~~~g~~v~~~---v~s~~~a~~a~~~g~D~ivv~-G~eaGGh~~~~~~~~~ll~~ 157 (332)
+.|++.+.+|.... ....++.+++.|++++.. +.++.+....+..++|+|.+. +.+.++. ...+..+.+
T Consensus 248 ~aGAD~vTVH~ea~~~ti~~ai~~akk~GikvgVD~lnp~tp~e~i~~l~~~vD~Vllht~vdp~~~----~~~~~kI~~ 323 (391)
T PRK13307 248 DATADAVVISGLAPISTIEKAIHEAQKTGIYSILDMLNVEDPVKLLESLKVKPDVVELHRGIDEEGT----EHAWGNIKE 323 (391)
T ss_pred hcCCCEEEEeccCCHHHHHHHHHHHHHcCCEEEEEEcCCCCHHHHHHHhhCCCCEEEEccccCCCcc----cchHHHHHH
Confidence 99999999995322 234667788899998873 335555555557899999884 4554432 234566777
Q ss_pred HHHHhCCCCCcEEeecCcCCHHHHHHHHHcCcceeeeccccccCc
Q 020013 158 VVDLIGDRDIPIIAAGGIVDARGYVAALSLGAQGICLGTRFVASE 202 (332)
Q Consensus 158 i~~~~~~~~iPviaaGGI~~~~~v~~al~~GA~gV~~GT~fl~t~ 202 (332)
+++.. .+++|.++||| +.+++.+++.+|||.+++||++..++
T Consensus 324 ikk~~--~~~~I~VdGGI-~~eti~~l~~aGADivVVGsaIf~a~ 365 (391)
T PRK13307 324 IKKAG--GKILVAVAGGV-RVENVEEALKAGADILVVGRAITKSK 365 (391)
T ss_pred HHHhC--CCCcEEEECCc-CHHHHHHHHHcCCCEEEEeHHHhCCC
Confidence 76642 26899999999 79999999999999999999977543
|
|
| >PRK13803 bifunctional phosphoribosylanthranilate isomerase/tryptophan synthase subunit beta; Provisional | Back alignment and domain information |
|---|
Probab=98.84 E-value=2.4e-07 Score=94.23 Aligned_cols=185 Identities=15% Similarity=0.185 Sum_probs=124.1
Q ss_pred CCCcHHHHHHHHhCC--Cceeec---CCCCCCHHH-HHHHHHHHHhhcCCcEEEEeecCCCCHHHHHHHHhcCCcEEEEc
Q 020013 21 DISGPELVAAVANAG--GLGLLR---APDWEAPDY-LRDLIRKTRSLTERPFGVGVVLAFPHNENIKAILSEKVAVLQVS 94 (332)
Q Consensus 21 g~s~~~la~avs~aG--glG~i~---~~~~~~~e~-~~~~i~~~r~~~~~p~gvnl~~~~~~~~~~~~~~~~~~~~I~~~ 94 (332)
|+++++.+..++++| .+||+. ++++.+++. .+++.+.++. ..+..|.++++.+.++..+.+.+.+.|+|++|
T Consensus 9 Git~~eda~~a~~~gaD~iGfIf~~~SpR~V~~~~~a~~i~~~l~~--~~v~~VgVfv~~~~~~i~~~~~~~~ld~vQLH 86 (610)
T PRK13803 9 GIKDSALISKAVDMLPDFIGFIFYEKSPRFVGNKFLAPNLEKAIRK--AGGRPVGVFVNESAKAMLKFSKKNGIDFVQLH 86 (610)
T ss_pred CCCcHHHHHHHHHcCCCEEEEEecCCCCCCCCHHHHHHHHHHhCCC--CCCCEEEEEeCCCHHHHHHHHHhcCCCEEEEC
Confidence 588999999999998 599995 345677887 6666665542 12345788888775666777778899999999
Q ss_pred cCCCc---HHHHHHHHhCCCEEEEec--CCHHHHHHH--HHcCCCEEEEecC--CCCcccCCCCchhhhHHHHHHHhCCC
Q 020013 95 WGEYS---EELVLEAHSAGVKVVPQV--GSFDEARKA--VNAGVDAIIVQGR--EAGGHVIGQDGLISLLPMVVDLIGDR 165 (332)
Q Consensus 95 ~g~~~---~~~i~~~~~~g~~v~~~v--~s~~~a~~a--~~~g~D~ivv~G~--eaGGh~~~~~~~~~ll~~i~~~~~~~ 165 (332)
|..+ .+.++.+++.+++++..+ .+..+...+ ...-+|+++++.. ..||. |....|.+++.+. .
T Consensus 87 -G~e~~~~~~~~~~l~~~~~~iika~~v~~~~~~~~~~~~~~~~d~~LlDs~~~~~GGt--G~~fdw~~~~~~~--~--- 158 (610)
T PRK13803 87 -GAESKAEPAYCQRIYKKSIKKIGSFLIDDAFGFEVLDEYRDHVKYFLFDNKTKIYGGS--GKSFDWEKFYNYN--F--- 158 (610)
T ss_pred -CCCCcccHHHHHHhhhcCCcEEEEEEeCChhhHHHHHhhhccCCEEEEcCCCCCCCCC--CCccChHHhhhcc--c---
Confidence 6666 778888887777777533 232222222 2234899999753 23443 4445677765431 1
Q ss_pred CCcEEeecCcCCHHHHHHHHHc-Ccc--eeeeccccccCccCCCCHHHHHHHhc
Q 020013 166 DIPIIAAGGIVDARGYVAALSL-GAQ--GICLGTRFVASEESYAHPEYKRKLVE 216 (332)
Q Consensus 166 ~iPviaaGGI~~~~~v~~al~~-GA~--gV~~GT~fl~t~Es~~~~~~k~~~~~ 216 (332)
+.|++.+||| +++|+.+++.. ... ||-+-|.+=.++.-.-.+..|+-+..
T Consensus 159 ~~p~iLAGGL-~peNV~~ai~~~~p~~~gVDvsSGvE~~pG~KD~~ki~~fi~~ 211 (610)
T PRK13803 159 KFPFFLSGGL-SPTNFDRIINLTHPQILGIDVSSGFEDSPGNKKLTLLKSFITN 211 (610)
T ss_pred CCcEEEEeCC-CHHHHHHHHhhhCCCceEEEccCcccCCCCCcCHHHHHHHHHH
Confidence 5799999999 89999999984 556 89998887543333333444444433
|
|
| >PRK00748 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Validated | Back alignment and domain information |
|---|
Probab=98.82 E-value=1.6e-07 Score=84.16 Aligned_cols=144 Identities=25% Similarity=0.322 Sum_probs=96.2
Q ss_pred HHHHHHHHhhcCCcEEEEeecCCCCHHHHHHHHhcCCcEEEEccCC-CcHHHHHHHHh-C--CCEEEEec----------
Q 020013 52 RDLIRKTRSLTERPFGVGVVLAFPHNENIKAILSEKVAVLQVSWGE-YSEELVLEAHS-A--GVKVVPQV---------- 117 (332)
Q Consensus 52 ~~~i~~~r~~~~~p~gvnl~~~~~~~~~~~~~~~~~~~~I~~~~g~-~~~~~i~~~~~-~--g~~v~~~v---------- 117 (332)
.+.++++++.++.|+-++=.+. ..+.++.+.+.|++.|.+.... ..++.++.+.+ . .+.+-..+
T Consensus 63 ~~~i~~i~~~~~~pv~~~GGI~--~~ed~~~~~~~Ga~~vilg~~~l~~~~~l~ei~~~~~~~i~vsid~k~~~v~~~g~ 140 (233)
T PRK00748 63 LELIEAIVKAVDIPVQVGGGIR--SLETVEALLDAGVSRVIIGTAAVKNPELVKEACKKFPGKIVVGLDARDGKVATDGW 140 (233)
T ss_pred HHHHHHHHHHCCCCEEEcCCcC--CHHHHHHHHHcCCCEEEECchHHhCHHHHHHHHHHhCCCceeeeeccCCEEEEccC
Confidence 3456666666667776543332 2566778888899998876321 11223333322 1 12221111
Q ss_pred -----CC-HHHHHHHHHcCCCEEEEecCCCCcccCCCCchhhhHHHHHHHhCCCCCcEEeecCcCCHHHHHHHHHcC-cc
Q 020013 118 -----GS-FDEARKAVNAGVDAIIVQGREAGGHVIGQDGLISLLPMVVDLIGDRDIPIIAAGGIVDARGYVAALSLG-AQ 190 (332)
Q Consensus 118 -----~s-~~~a~~a~~~g~D~ivv~G~eaGGh~~~~~~~~~ll~~i~~~~~~~~iPviaaGGI~~~~~v~~al~~G-A~ 190 (332)
.+ .+.++.+.+.|+|.|++.+....|...+ ..+.++.++.+.. ++|||++|||.+.+++.+++..| |+
T Consensus 141 ~~~~~~~~~e~~~~~~~~g~~~ii~~~~~~~g~~~G--~d~~~i~~l~~~~---~ipvia~GGi~~~~di~~~~~~g~~~ 215 (233)
T PRK00748 141 LETSGVTAEDLAKRFEDAGVKAIIYTDISRDGTLSG--PNVEATRELAAAV---PIPVIASGGVSSLDDIKALKGLGAVE 215 (233)
T ss_pred eecCCCCHHHHHHHHHhcCCCEEEEeeecCcCCcCC--CCHHHHHHHHHhC---CCCEEEeCCCCCHHHHHHHHHcCCcc
Confidence 12 3445667778999998877655554323 4588889988876 79999999999999999999998 99
Q ss_pred eeeeccccccCc
Q 020013 191 GICLGTRFVASE 202 (332)
Q Consensus 191 gV~~GT~fl~t~ 202 (332)
||++|++|+.-.
T Consensus 216 gv~vg~a~~~~~ 227 (233)
T PRK00748 216 GVIVGRALYEGK 227 (233)
T ss_pred EEEEEHHHHcCC
Confidence 999999988653
|
|
| >KOG3111 consensus D-ribulose-5-phosphate 3-epimerase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.82 E-value=1.7e-07 Score=79.36 Aligned_cols=143 Identities=17% Similarity=0.274 Sum_probs=104.7
Q ss_pred HHHHHHhhcCCc--EEEEeecCCCCHHHHHHHHhcCCcEEEEccCC--CcHHHHHHHHhCCCEEEEec--C-CHHHHHHH
Q 020013 54 LIRKTRSLTERP--FGVGVVLAFPHNENIKAILSEKVAVLQVSWGE--YSEELVLEAHSAGVKVVPQV--G-SFDEARKA 126 (332)
Q Consensus 54 ~i~~~r~~~~~p--~gvnl~~~~~~~~~~~~~~~~~~~~I~~~~g~--~~~~~i~~~~~~g~~v~~~v--~-s~~~a~~a 126 (332)
.++.+|+.++++ |-+++++..| +++++.+..++++.+.+|... .+.++++++|+.|+++...+ . +++.+..
T Consensus 53 vV~slR~~~~~~~ffD~HmMV~~P-eq~V~~~a~agas~~tfH~E~~q~~~~lv~~ir~~Gmk~G~alkPgT~Ve~~~~- 130 (224)
T KOG3111|consen 53 VVESLRKHTGADPFFDVHMMVENP-EQWVDQMAKAGASLFTFHYEATQKPAELVEKIREKGMKVGLALKPGTPVEDLEP- 130 (224)
T ss_pred HHHHHHhccCCCcceeEEEeecCH-HHHHHHHHhcCcceEEEEEeeccCHHHHHHHHHHcCCeeeEEeCCCCcHHHHHH-
Confidence 366777776665 8899999877 788999999999999998532 25689999999999987654 3 4444433
Q ss_pred HHcCCCEEEEe--cCCCCcccCCCCchhhhHHHHHHHhCCCCCcEE-eecCcCCHHHHHHHHHcCcceeeeccccccCcc
Q 020013 127 VNAGVDAIIVQ--GREAGGHVIGQDGLISLLPMVVDLIGDRDIPII-AAGGIVDARGYVAALSLGAQGICLGTRFVASEE 203 (332)
Q Consensus 127 ~~~g~D~ivv~--G~eaGGh~~~~~~~~~ll~~i~~~~~~~~iPvi-aaGGI~~~~~v~~al~~GA~gV~~GT~fl~t~E 203 (332)
...-+|.+++- .+..||+. .....+..+..+++.. .-+.| ..||+ .++++.++..+||+.++.||+.+.+..
T Consensus 131 ~~~~~D~vLvMtVePGFGGQk-Fme~mm~KV~~lR~ky---p~l~ievDGGv-~~~ti~~~a~AGAN~iVaGsavf~a~d 205 (224)
T KOG3111|consen 131 LAEHVDMVLVMTVEPGFGGQK-FMEDMMPKVEWLREKY---PNLDIEVDGGV-GPSTIDKAAEAGANMIVAGSAVFGAAD 205 (224)
T ss_pred hhccccEEEEEEecCCCchhh-hHHHHHHHHHHHHHhC---CCceEEecCCc-CcchHHHHHHcCCCEEEecceeecCCC
Confidence 33468988874 34446654 2223455555666544 23444 89999 799999999999999999999987754
|
|
| >KOG2335 consensus tRNA-dihydrouridine synthase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=98.82 E-value=1.2e-07 Score=87.78 Aligned_cols=180 Identities=24% Similarity=0.299 Sum_probs=118.1
Q ss_pred ecCCCCCCCCcHHHHHHHHhCCCceeecCCCCCCHHHHHHHHHHHHh--h----cCCcEEEEeecCCCCHHHHHH--HHh
Q 020013 14 VQAPLGPDISGPELVAAVANAGGLGLLRAPDWEAPDYLRDLIRKTRS--L----TERPFGVGVVLAFPHNENIKA--ILS 85 (332)
Q Consensus 14 i~apM~~g~s~~~la~avs~aGglG~i~~~~~~~~e~~~~~i~~~r~--~----~~~p~gvnl~~~~~~~~~~~~--~~~ 85 (332)
+.|||- ..|...+..=+-.. +.-...++ +.-.+.+... .+.|. + .+.|+-|.+-.+++ +..++. +++
T Consensus 22 i~APMv-d~S~l~fR~L~R~y-~~~l~yTp-Mi~a~~fv~~-ek~r~~~~st~~~D~PLIvQf~~ndp-~~ll~Aa~lv~ 96 (358)
T KOG2335|consen 22 IVAPMV-DYSELAFRRLVRLY-GADLLYTP-MIHAKTFVHS-EKYRDSELSTSPEDRPLIVQFGGNDP-ENLLKAARLVQ 96 (358)
T ss_pred ccCCcc-cccHHHHHHHHHHh-CCceEech-HHHHHHHhcC-ccchhhhcccCCCCCceEEEEcCCCH-HHHHHHHHHhh
Confidence 689996 68887776655554 34444332 1111111110 11111 1 26899999888765 222222 223
Q ss_pred cCCcEEEEccCCCcH-------------------HHHHHHHh-CCCEEEEecC-------CHHHHHHHHHcCCCEEEEec
Q 020013 86 EKVAVLQVSWGEYSE-------------------ELVLEAHS-AGVKVVPQVG-------SFDEARKAVNAGVDAIIVQG 138 (332)
Q Consensus 86 ~~~~~I~~~~g~~~~-------------------~~i~~~~~-~g~~v~~~v~-------s~~~a~~a~~~g~D~ivv~G 138 (332)
--.|.|.++.|+|.. ++++.+++ .+.+|-.++- |++.++..+++|++.+.|.|
T Consensus 97 ~y~D~idlNcGCPq~~a~~g~yGa~L~~~~eLv~e~V~~v~~~l~~pVs~KIRI~~d~~kTvd~ak~~e~aG~~~ltVHG 176 (358)
T KOG2335|consen 97 PYCDGIDLNCGCPQKVAKRGGYGAFLMDNPELVGEMVSAVRANLNVPVSVKIRIFVDLEKTVDYAKMLEDAGVSLLTVHG 176 (358)
T ss_pred hhcCcccccCCCCHHHHhcCCccceeccCHHHHHHHHHHHHhhcCCCeEEEEEecCcHHHHHHHHHHHHhCCCcEEEEec
Confidence 335999999888531 12233332 3566655542 67889999999999999999
Q ss_pred CCC--CcccCCCCchhhhHHHHHHHhCCCCCcEEeecCcCCHHHHHHHHH-cCcceeeeccccccC
Q 020013 139 REA--GGHVIGQDGLISLLPMVVDLIGDRDIPIIAAGGIVDARGYVAALS-LGAQGICLGTRFVAS 201 (332)
Q Consensus 139 ~ea--GGh~~~~~~~~~ll~~i~~~~~~~~iPviaaGGI~~~~~v~~al~-~GA~gV~~GT~fl~t 201 (332)
+.. .|+. .....|+.+..+++.++ ++||++.|+|.+.+++..++. .|||||+.|...+..
T Consensus 177 Rtr~~kg~~-~~pad~~~i~~v~~~~~--~ipviaNGnI~~~~d~~~~~~~tG~dGVM~arglL~N 239 (358)
T KOG2335|consen 177 RTREQKGLK-TGPADWEAIKAVRENVP--DIPVIANGNILSLEDVERCLKYTGADGVMSARGLLYN 239 (358)
T ss_pred ccHHhcCCC-CCCcCHHHHHHHHHhCc--CCcEEeeCCcCcHHHHHHHHHHhCCceEEecchhhcC
Confidence 732 3432 23456899999999884 499999999999999999998 999999999886644
|
|
| >cd04731 HisF The cyclase subunit of imidazoleglycerol phosphate synthase (HisF) | Back alignment and domain information |
|---|
Probab=98.81 E-value=2e-07 Score=84.19 Aligned_cols=171 Identities=20% Similarity=0.273 Sum_probs=109.2
Q ss_pred cHHHHHHHHhCCCceee--cCC--CCCCHHHHHHHHHHHHhhcCCcEEEEeecCCCCHHHHHHHHhcCCcEEEEccCCC-
Q 020013 24 GPELVAAVANAGGLGLL--RAP--DWEAPDYLRDLIRKTRSLTERPFGVGVVLAFPHNENIKAILSEKVAVLQVSWGEY- 98 (332)
Q Consensus 24 ~~~la~avs~aGglG~i--~~~--~~~~~e~~~~~i~~~r~~~~~p~gvnl~~~~~~~~~~~~~~~~~~~~I~~~~g~~- 98 (332)
..+++....++|.=.++ ... ....+ .-.+.++++++..+.|+-++=-+. ..+.++.+++.+++.|.++.+..
T Consensus 29 ~~~~a~~~~~~G~~~i~i~d~~~~~~~~~-~~~~~i~~i~~~~~~pv~~~GGI~--s~~d~~~~l~~G~~~v~ig~~~~~ 105 (243)
T cd04731 29 PVELAKRYNEQGADELVFLDITASSEGRE-TMLDVVERVAEEVFIPLTVGGGIR--SLEDARRLLRAGADKVSINSAAVE 105 (243)
T ss_pred HHHHHHHHHHCCCCEEEEEcCCcccccCc-ccHHHHHHHHHhCCCCEEEeCCCC--CHHHHHHHHHcCCceEEECchhhh
Confidence 34777777777632222 111 11111 123566777766667766543332 24566677778999988763321
Q ss_pred cHHHHHHH-HhCC---CEEEE---------------------ecCCHHHHHHHHHcCCCEEEEecCCCCcccCCCCchhh
Q 020013 99 SEELVLEA-HSAG---VKVVP---------------------QVGSFDEARKAVNAGVDAIIVQGREAGGHVIGQDGLIS 153 (332)
Q Consensus 99 ~~~~i~~~-~~~g---~~v~~---------------------~v~s~~~a~~a~~~g~D~ivv~G~eaGGh~~~~~~~~~ 153 (332)
.+++++.+ ++.+ +.+-. ...+.+.++.+.+.|+|.|++.+....|+..+ ..+.
T Consensus 106 ~p~~~~~i~~~~~~~~i~~~ld~k~~~~~~~~v~~~~~~~~~~~~~~~~~~~l~~~G~d~i~v~~i~~~g~~~g--~~~~ 183 (243)
T cd04731 106 NPELIREIAKRFGSQCVVVSIDAKRRGDGGYEVYTHGGRKPTGLDAVEWAKEVEELGAGEILLTSMDRDGTKKG--YDLE 183 (243)
T ss_pred ChHHHHHHHHHcCCCCEEEEEEeeecCCCceEEEEcCCceecCCCHHHHHHHHHHCCCCEEEEeccCCCCCCCC--CCHH
Confidence 12344333 3222 22111 11234566778899999999988766665322 3578
Q ss_pred hHHHHHHHhCCCCCcEEeecCcCCHHHHHHHHHc-CcceeeeccccccCc
Q 020013 154 LLPMVVDLIGDRDIPIIAAGGIVDARGYVAALSL-GAQGICLGTRFVASE 202 (332)
Q Consensus 154 ll~~i~~~~~~~~iPviaaGGI~~~~~v~~al~~-GA~gV~~GT~fl~t~ 202 (332)
++.++.+.. ++||+++|||.+++++.+++.. |+|+|++|++|..-.
T Consensus 184 ~i~~i~~~~---~~pvia~GGi~~~~di~~~l~~~g~dgv~vg~al~~~~ 230 (243)
T cd04731 184 LIRAVSSAV---NIPVIASGGAGKPEHFVEAFEEGGADAALAASIFHFGE 230 (243)
T ss_pred HHHHHHhhC---CCCEEEeCCCCCHHHHHHHHHhCCCCEEEEeHHHHcCC
Confidence 888888776 7999999999999999999997 999999999987653
|
Imidazole glycerol phosphate synthase (IGPS) catalyzes the fifth step of histidine biosynthesis, the formation of the imidazole ring. IGPS converts N1-(5'-phosphoribulosyl)-formimino-5-aminoimidazole-4-carboxamide ribonucleotide (PRFAR) to imidazole glycerol phosphate (ImGP) and 5'-(5-aminoimidazole-4-carboxamide) ribonucleotide (AICAR). This conversion involves two tightly coupled reactions in distinct active sites of IGPS. The two catalytic domains can be fused, like in fungi and plants, or peformed by a heterodimer (HisH-glutaminase and HisF-cyclase), like in bacteria. |
| >PRK09517 multifunctional thiamine-phosphate pyrophosphorylase/synthase/phosphomethylpyrimidine kinase; Provisional | Back alignment and domain information |
|---|
Probab=98.79 E-value=2e-07 Score=97.04 Aligned_cols=169 Identities=14% Similarity=0.236 Sum_probs=113.2
Q ss_pred HHHHHHHhCCCceeecCCC-CCCHHHHHHHHHHHHhhcCCcEEEEeecCCCCHHHHHHHHhcCCcEEEEccCCCcHHHHH
Q 020013 26 ELVAAVANAGGLGLLRAPD-WEAPDYLRDLIRKTRSLTERPFGVGVVLAFPHNENIKAILSEKVAVLQVSWGEYSEELVL 104 (332)
Q Consensus 26 ~la~avs~aGglG~i~~~~-~~~~e~~~~~i~~~r~~~~~p~gvnl~~~~~~~~~~~~~~~~~~~~I~~~~g~~~~~~i~ 104 (332)
+.+.+..++ |+..|.... -.+.+.+.+..+++++++.. +++-++++ +.++++.+.++| |+++..+.+....+
T Consensus 23 ~~l~~~l~~-g~~~iqlR~K~~~~~~~~~~a~~l~~l~~~-~~~~liin----d~~~la~~~~~d-VHlg~~dl~~~~~r 95 (755)
T PRK09517 23 GIVDSAISG-GVSVVQLRDKNAGVEDVRAAAKELKELCDA-RGVALVVN----DRLDVAVELGLH-VHIGQGDTPYTQAR 95 (755)
T ss_pred HHHHHHHhc-CCCEEEEeCCCCCHHHHHHHHHHHHHHHHH-hCCeEEEe----ChHHHHHHcCCC-eecCCCcCCHHHHH
Confidence 344445454 466665411 13556677777777766532 45666664 457888899999 88876555555666
Q ss_pred HHHhCCCEEEEecCCHHHHHHHH----Hc---CCCEEEEecC-CCCcccCCC-CchhhhHHHHHHHhCCCCCcEEeecCc
Q 020013 105 EAHSAGVKVVPQVGSFDEARKAV----NA---GVDAIIVQGR-EAGGHVIGQ-DGLISLLPMVVDLIGDRDIPIIAAGGI 175 (332)
Q Consensus 105 ~~~~~g~~v~~~v~s~~~a~~a~----~~---g~D~ivv~G~-eaGGh~~~~-~~~~~ll~~i~~~~~~~~iPviaaGGI 175 (332)
++...+..+...+++.+++..+. .. |+||+.+-.. ....|.+.. .-.+..+.++++.....++||++.|||
T Consensus 96 ~~~~~~~~iG~S~h~~~e~~~~~~~~~~~g~~gaDYi~~Gpvf~T~tK~~~~~~lG~~~l~~~~~~~~~~~iPv~AiGGI 175 (755)
T PRK09517 96 RLLPAHLELGLTIETLDQLEAVIAQCAETGVALPDVIGIGPVASTATKPDAPPALGVDGIAEIAAVAQDHGIASVAIGGV 175 (755)
T ss_pred HhcCCCCEEEEeCCCHHHHHHHHhhhccCCCCCCCEEEECCccccCCCCCCCCCCCHHHHHHHHHhcCcCCCCEEEECCC
Confidence 65555677788999999886643 22 4999998322 122232111 123667788777662113999999999
Q ss_pred CCHHHHHHHHHcCcceeeeccccccCc
Q 020013 176 VDARGYVAALSLGAQGICLGTRFVASE 202 (332)
Q Consensus 176 ~~~~~v~~al~~GA~gV~~GT~fl~t~ 202 (332)
+.+++.++++.||+||.+.++++.++
T Consensus 176 -~~~~~~~~~~~Ga~giAvisai~~a~ 201 (755)
T PRK09517 176 -GLRNAAELAATGIDGLCVVSAIMAAA 201 (755)
T ss_pred -CHHHHHHHHHcCCCEEEEehHhhCCC
Confidence 89999999999999999999999654
|
|
| >PRK01033 imidazole glycerol phosphate synthase subunit HisF; Provisional | Back alignment and domain information |
|---|
Probab=98.76 E-value=3.8e-07 Score=83.19 Aligned_cols=142 Identities=26% Similarity=0.328 Sum_probs=95.0
Q ss_pred HHHHHHHhhcCCcEEEEeecCCCCHHHHHHHHhcCCcEEEEccCC-CcHHHHHHHHh-CC---CEEEEe-----------
Q 020013 53 DLIRKTRSLTERPFGVGVVLAFPHNENIKAILSEKVAVLQVSWGE-YSEELVLEAHS-AG---VKVVPQ----------- 116 (332)
Q Consensus 53 ~~i~~~r~~~~~p~gvnl~~~~~~~~~~~~~~~~~~~~I~~~~g~-~~~~~i~~~~~-~g---~~v~~~----------- 116 (332)
+.++++.+.++.|+-++=-+. ..+.++.+.+.|++.|.++... ..+++++.+.+ .+ +.+-..
T Consensus 64 ~~i~~i~~~~~~pv~~gGGi~--s~~d~~~l~~~G~~~vvigs~~~~~~~~~~~~~~~~~~~~i~vsiD~k~g~~~~~~v 141 (258)
T PRK01033 64 ELIENLASECFMPLCYGGGIK--TLEQAKKIFSLGVEKVSINTAALEDPDLITEAAERFGSQSVVVSIDVKKNLGGKFDV 141 (258)
T ss_pred HHHHHHHHhCCCCEEECCCCC--CHHHHHHHHHCCCCEEEEChHHhcCHHHHHHHHHHhCCCcEEEEEEEecCCCCcEEE
Confidence 455666555566654432121 2455666677899998876321 12334444322 21 111111
Q ss_pred ----------cCCHHHHHHHHHcCCCEEEEecCCCCcccCCCCchhhhHHHHHHHhCCCCCcEEeecCcCCHHHHHHHH-
Q 020013 117 ----------VGSFDEARKAVNAGVDAIIVQGREAGGHVIGQDGLISLLPMVVDLIGDRDIPIIAAGGIVDARGYVAAL- 185 (332)
Q Consensus 117 ----------v~s~~~a~~a~~~g~D~ivv~G~eaGGh~~~~~~~~~ll~~i~~~~~~~~iPviaaGGI~~~~~v~~al- 185 (332)
....+.++.+.+.|++.+++.+....|...| ..+.++.++.+.. ++|||++|||++.+++.+++
T Consensus 142 ~~~gw~~~~~~~~~e~~~~~~~~g~~~ii~~~i~~~G~~~G--~d~~~i~~~~~~~---~ipvIasGGv~s~eD~~~l~~ 216 (258)
T PRK01033 142 YTHNGTKKLKKDPLELAKEYEALGAGEILLNSIDRDGTMKG--YDLELLKSFRNAL---KIPLIALGGAGSLDDIVEAIL 216 (258)
T ss_pred EEcCCeecCCCCHHHHHHHHHHcCCCEEEEEccCCCCCcCC--CCHHHHHHHHhhC---CCCEEEeCCCCCHHHHHHHHH
Confidence 1123455677899999999988766554323 3688899988876 79999999999999999999
Q ss_pred HcCcceeeeccccccC
Q 020013 186 SLGAQGICLGTRFVAS 201 (332)
Q Consensus 186 ~~GA~gV~~GT~fl~t 201 (332)
..|++||.+|++|.+.
T Consensus 217 ~~GvdgVivg~a~~~~ 232 (258)
T PRK01033 217 NLGADAAAAGSLFVFK 232 (258)
T ss_pred HCCCCEEEEcceeeeC
Confidence 7999999999999997
|
|
| >TIGR00735 hisF imidazoleglycerol phosphate synthase, cyclase subunit | Back alignment and domain information |
|---|
Probab=98.75 E-value=3.7e-07 Score=83.11 Aligned_cols=172 Identities=21% Similarity=0.307 Sum_probs=110.2
Q ss_pred CcH-HHHHHHHhCCCceeecCCCCC----CHHHHHHHHHHHHhhcCCcEEEEeecCCCCHHHHHHHHhcCCcEEEEccCC
Q 020013 23 SGP-ELVAAVANAGGLGLLRAPDWE----APDYLRDLIRKTRSLTERPFGVGVVLAFPHNENIKAILSEKVAVLQVSWGE 97 (332)
Q Consensus 23 s~~-~la~avs~aGglG~i~~~~~~----~~e~~~~~i~~~r~~~~~p~gvnl~~~~~~~~~~~~~~~~~~~~I~~~~g~ 97 (332)
.+| +++....+.|.=.+... ... .-..-.+.++++++.++.|+-++=-+. ..+.++.++..|++.|.++-..
T Consensus 30 ~dp~~~a~~~~~~G~~~l~v~-Dl~~~~~~~~~n~~~i~~i~~~~~~pv~~~GGi~--s~~d~~~~~~~Ga~~vivgt~~ 106 (254)
T TIGR00735 30 GDPVELAQRYDEEGADELVFL-DITASSEGRTTMIDVVERTAETVFIPLTVGGGIK--SIEDVDKLLRAGADKVSINTAA 106 (254)
T ss_pred CCHHHHHHHHHHcCCCEEEEE-cCCcccccChhhHHHHHHHHHhcCCCEEEECCCC--CHHHHHHHHHcCCCEEEEChhH
Confidence 355 67777766665333322 111 111223456666666666765532222 2456777788899998875211
Q ss_pred -CcHHHHHHHHh-CC-CEEEEec--------------------------CCHHHHHHHHHcCCCEEEEecCCCCcccCCC
Q 020013 98 -YSEELVLEAHS-AG-VKVVPQV--------------------------GSFDEARKAVNAGVDAIIVQGREAGGHVIGQ 148 (332)
Q Consensus 98 -~~~~~i~~~~~-~g-~~v~~~v--------------------------~s~~~a~~a~~~g~D~ivv~G~eaGGh~~~~ 148 (332)
..+++++.+.+ .| -+++..+ ...+.++.+.+.|+|.|++.+.+..|+..+
T Consensus 107 ~~~p~~~~~~~~~~~~~~iv~slD~~~g~~~~~~~~~v~i~gw~~~~~~~~~~~~~~l~~~G~~~iivt~i~~~g~~~g- 185 (254)
T TIGR00735 107 VKNPELIYELADRFGSQCIVVAIDAKRVYVNSYCWYEVYIYGGRESTGLDAVEWAKEVEKLGAGEILLTSMDKDGTKSG- 185 (254)
T ss_pred hhChHHHHHHHHHcCCCCEEEEEEeccCCCCCCccEEEEEeCCcccCCCCHHHHHHHHHHcCCCEEEEeCcCcccCCCC-
Confidence 12344444432 23 1222111 123455677889999999988777666422
Q ss_pred CchhhhHHHHHHHhCCCCCcEEeecCcCCHHHHHHHHHcC-cceeeeccccccCc
Q 020013 149 DGLISLLPMVVDLIGDRDIPIIAAGGIVDARGYVAALSLG-AQGICLGTRFVASE 202 (332)
Q Consensus 149 ~~~~~ll~~i~~~~~~~~iPviaaGGI~~~~~v~~al~~G-A~gV~~GT~fl~t~ 202 (332)
..+.++.++++.. ++||+++|||.+.+++.+++..| ++||++|++|....
T Consensus 186 -~~~~~~~~i~~~~---~ipvia~GGi~s~~di~~~~~~g~~dgv~~g~a~~~~~ 236 (254)
T TIGR00735 186 -YDLELTKAVSEAV---KIPVIASGGAGKPEHFYEAFTKGKADAALAASVFHYRE 236 (254)
T ss_pred -CCHHHHHHHHHhC---CCCEEEeCCCCCHHHHHHHHHcCCcceeeEhHHHhCCC
Confidence 4578888888876 79999999999999999999988 99999999986553
|
|
| >PRK14024 phosphoribosyl isomerase A; Provisional | Back alignment and domain information |
|---|
Probab=98.75 E-value=7.3e-07 Score=80.51 Aligned_cols=170 Identities=19% Similarity=0.276 Sum_probs=105.8
Q ss_pred HHHHHHHhCCC--ceeecCCCCCCHHHHHHHHHHHHhhcCCcEEEEeecCCCCHHHHHHHHhcCCcEEEEccCC-CcHHH
Q 020013 26 ELVAAVANAGG--LGLLRAPDWEAPDYLRDLIRKTRSLTERPFGVGVVLAFPHNENIKAILSEKVAVLQVSWGE-YSEEL 102 (332)
Q Consensus 26 ~la~avs~aGg--lG~i~~~~~~~~e~~~~~i~~~r~~~~~p~gvnl~~~~~~~~~~~~~~~~~~~~I~~~~g~-~~~~~ 102 (332)
++|......|. +=++-.-.....+.-...++++.+....|+-++=-+. ..+.++.+++.|++-+.++... ..+++
T Consensus 36 ~~a~~~~~~g~~~l~ivDLd~~~g~~~n~~~i~~i~~~~~~pv~vgGGir--s~edv~~~l~~Ga~kvviGs~~l~~p~l 113 (241)
T PRK14024 36 DAALAWQRDGAEWIHLVDLDAAFGRGSNRELLAEVVGKLDVKVELSGGIR--DDESLEAALATGCARVNIGTAALENPEW 113 (241)
T ss_pred HHHHHHHHCCCCEEEEEeccccCCCCccHHHHHHHHHHcCCCEEEcCCCC--CHHHHHHHHHCCCCEEEECchHhCCHHH
Confidence 56666666664 2222110001111123566666665566765532222 2577888899999988765221 12233
Q ss_pred HHHH-HhCCCEEEE--ec--------------CC-HHHHHHHHHcCCCEEEEecCCCCcccCCCCchhhhHHHHHHHhCC
Q 020013 103 VLEA-HSAGVKVVP--QV--------------GS-FDEARKAVNAGVDAIIVQGREAGGHVIGQDGLISLLPMVVDLIGD 164 (332)
Q Consensus 103 i~~~-~~~g~~v~~--~v--------------~s-~~~a~~a~~~g~D~ivv~G~eaGGh~~~~~~~~~ll~~i~~~~~~ 164 (332)
++.+ +..+-.++. .+ .+ .+.++...+.|++.|++.+...-|...+ ..+.++.++.+..
T Consensus 114 ~~~i~~~~~~~i~vsld~~~~~v~~~Gw~~~~~~~~~~~~~l~~~G~~~iiv~~~~~~g~~~G--~d~~~i~~i~~~~-- 189 (241)
T PRK14024 114 CARVIAEHGDRVAVGLDVRGHTLAARGWTRDGGDLWEVLERLDSAGCSRYVVTDVTKDGTLTG--PNLELLREVCART-- 189 (241)
T ss_pred HHHHHHHhhhhEEEEEEEeccEeccCCeeecCccHHHHHHHHHhcCCCEEEEEeecCCCCccC--CCHHHHHHHHhhC--
Confidence 3332 222211211 11 11 3456777889999999988765443223 3588999998876
Q ss_pred CCCcEEeecCcCCHHHHHHHHH---cCcceeeeccccccCc
Q 020013 165 RDIPIIAAGGIVDARGYVAALS---LGAQGICLGTRFVASE 202 (332)
Q Consensus 165 ~~iPviaaGGI~~~~~v~~al~---~GA~gV~~GT~fl~t~ 202 (332)
++|||++|||.+.+++.++++ .|++||++|++++...
T Consensus 190 -~ipviasGGi~s~~D~~~l~~~~~~GvdgV~igra~~~g~ 229 (241)
T PRK14024 190 -DAPVVASGGVSSLDDLRALAELVPLGVEGAIVGKALYAGA 229 (241)
T ss_pred -CCCEEEeCCCCCHHHHHHHhhhccCCccEEEEeHHHHcCC
Confidence 799999999999999999875 4999999999988664
|
|
| >PRK02083 imidazole glycerol phosphate synthase subunit HisF; Provisional | Back alignment and domain information |
|---|
Probab=98.72 E-value=5.9e-07 Score=81.69 Aligned_cols=171 Identities=22% Similarity=0.311 Sum_probs=106.7
Q ss_pred CcH-HHHHHHHhCCCcee--ecCCC--CCCHHHHHHHHHHHHhhcCCcEEEEeecCCCCHHHHHHHHhcCCcEEEEccCC
Q 020013 23 SGP-ELVAAVANAGGLGL--LRAPD--WEAPDYLRDLIRKTRSLTERPFGVGVVLAFPHNENIKAILSEKVAVLQVSWGE 97 (332)
Q Consensus 23 s~~-~la~avs~aGglG~--i~~~~--~~~~e~~~~~i~~~r~~~~~p~gvnl~~~~~~~~~~~~~~~~~~~~I~~~~g~ 97 (332)
++| +++....+.|.--+ ..... ... ..-.+.++++++.++.|+-++=-+. ..+.++.+++.+++.|.++...
T Consensus 30 ~d~~~~a~~~~~~G~~~i~i~dl~~~~~~~-~~~~~~i~~i~~~~~ipv~~~GGi~--s~~~~~~~l~~Ga~~Viigt~~ 106 (253)
T PRK02083 30 GDPVELAKRYNEEGADELVFLDITASSEGR-DTMLDVVERVAEQVFIPLTVGGGIR--SVEDARRLLRAGADKVSINSAA 106 (253)
T ss_pred CCHHHHHHHHHHcCCCEEEEEeCCcccccC-cchHHHHHHHHHhCCCCEEeeCCCC--CHHHHHHHHHcCCCEEEEChhH
Confidence 344 67777777664222 21110 011 1223456666666666765542222 2466777777899999886321
Q ss_pred -CcHHHHHHHHh-CC---CEEEEec----------------------CCHHHHHHHHHcCCCEEEEecCCCCcccCCCCc
Q 020013 98 -YSEELVLEAHS-AG---VKVVPQV----------------------GSFDEARKAVNAGVDAIIVQGREAGGHVIGQDG 150 (332)
Q Consensus 98 -~~~~~i~~~~~-~g---~~v~~~v----------------------~s~~~a~~a~~~g~D~ivv~G~eaGGh~~~~~~ 150 (332)
..+++++.+.+ .| +.+...+ ...+.++.+.+.|+|.+++.+....|...+ .
T Consensus 107 l~~p~~~~ei~~~~g~~~iv~slD~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~g~~~ii~~~i~~~g~~~g--~ 184 (253)
T PRK02083 107 VANPELISEAADRFGSQCIVVAIDAKRDPEPGRWEVYTHGGRKPTGLDAVEWAKEVEELGAGEILLTSMDRDGTKNG--Y 184 (253)
T ss_pred hhCcHHHHHHHHHcCCCCEEEEEEeccCCCCCCEEEEEcCCceecCCCHHHHHHHHHHcCCCEEEEcCCcCCCCCCC--c
Confidence 12244444433 22 1221111 113455778889999999976544343212 3
Q ss_pred hhhhHHHHHHHhCCCCCcEEeecCcCCHHHHHHHHHc-CcceeeeccccccC
Q 020013 151 LISLLPMVVDLIGDRDIPIIAAGGIVDARGYVAALSL-GAQGICLGTRFVAS 201 (332)
Q Consensus 151 ~~~ll~~i~~~~~~~~iPviaaGGI~~~~~v~~al~~-GA~gV~~GT~fl~t 201 (332)
.+.++.++.+.. ++|||++|||.+.+++.+++.. |++||++||+|...
T Consensus 185 d~~~i~~~~~~~---~ipvia~GGv~s~~d~~~~~~~~G~~gvivg~al~~~ 233 (253)
T PRK02083 185 DLELTRAVSDAV---NVPVIASGGAGNLEHFVEAFTEGGADAALAASIFHFG 233 (253)
T ss_pred CHHHHHHHHhhC---CCCEEEECCCCCHHHHHHHHHhCCccEEeEhHHHHcC
Confidence 588889988876 7999999999999999999975 99999999998765
|
|
| >TIGR01859 fruc_bis_ald_ fructose-1,6-bisphosphate aldolase, class II, various bacterial and amitochondriate protist | Back alignment and domain information |
|---|
Probab=98.66 E-value=2.5e-06 Score=78.63 Aligned_cols=176 Identities=19% Similarity=0.209 Sum_probs=117.1
Q ss_pred CCCcHHHHHHHHhCC---CceeecC--C---CCCC-HHHHHHHHHHHHhhcC-CcEEEEeecCCCCHHHHHHHHhcCCcE
Q 020013 21 DISGPELVAAVANAG---GLGLLRA--P---DWEA-PDYLRDLIRKTRSLTE-RPFGVGVVLAFPHNENIKAILSEKVAV 90 (332)
Q Consensus 21 g~s~~~la~avs~aG---glG~i~~--~---~~~~-~e~~~~~i~~~r~~~~-~p~gvnl~~~~~~~~~~~~~~~~~~~~ 90 (332)
.+.+.+.+.++-++- ..++|-. . .+.. .+.+...+..+.+..+ .|+.+++= .-...+.++.+++.|.+.
T Consensus 22 n~~n~e~~~avi~aAe~~~~PvIl~~~~~~~~~~~~~~~~~~~~~~~a~~~~~vpv~lhlD-H~~~~e~i~~ai~~Gf~s 100 (282)
T TIGR01859 22 NFNNLEWTQAILEAAEEENSPVIIQVSEGAIKYMGGYKMAVAMVKTLIERMSIVPVALHLD-HGSSYESCIKAIKAGFSS 100 (282)
T ss_pred EECCHHHHHHHHHHHHHhCCCEEEEcCcchhhccCcHHHHHHHHHHHHHHCCCCeEEEECC-CCCCHHHHHHHHHcCCCE
Confidence 456777777776552 2344421 1 1222 4556666666555556 78888762 122357788889999999
Q ss_pred EEEccCCCcH-HH-------HHHHHhCCCEEE-----------------EecCCHHHHHHHHH-cCCCEEEEe-cCCCCc
Q 020013 91 LQVSWGEYSE-EL-------VLEAHSAGVKVV-----------------PQVGSFDEARKAVN-AGVDAIIVQ-GREAGG 143 (332)
Q Consensus 91 I~~~~g~~~~-~~-------i~~~~~~g~~v~-----------------~~v~s~~~a~~a~~-~g~D~ivv~-G~eaGG 143 (332)
|.+.....+. +. ++.++..|+.|- ...+++++++.+.+ .|+|++.+. |+--|-
T Consensus 101 Vmid~s~l~~~eni~~t~~v~~~a~~~gv~Ve~ElG~~gg~ed~~~g~~~~~t~~eea~~f~~~tgvD~Lavs~Gt~hg~ 180 (282)
T TIGR01859 101 VMIDGSHLPFEENLALTKKVVEIAHAKGVSVEAELGTLGGIEDGVDEKEAELADPDEAEQFVKETGVDYLAAAIGTSHGK 180 (282)
T ss_pred EEECCCCCCHHHHHHHHHHHHHHHHHcCCEEEEeeCCCcCccccccccccccCCHHHHHHHHHHHCcCEEeeccCccccc
Confidence 9986333232 22 333455566553 23568999999986 899999873 442221
Q ss_pred ccCCCCchhhhHHHHHHHhCCCCCcEEeec--CcCCHHHHHHHHHcCcceeeeccccccC
Q 020013 144 HVIGQDGLISLLPMVVDLIGDRDIPIIAAG--GIVDARGYVAALSLGAQGICLGTRFVAS 201 (332)
Q Consensus 144 h~~~~~~~~~ll~~i~~~~~~~~iPviaaG--GI~~~~~v~~al~~GA~gV~~GT~fl~t 201 (332)
....+.-.+.++.++++.+ ++|+++-| || +.+++.+++..|+++|-++|.+..+
T Consensus 181 ~~~~~~l~~e~L~~i~~~~---~iPlv~hGgSGi-~~e~i~~~i~~Gi~kiNv~T~l~~a 236 (282)
T TIGR01859 181 YKGEPGLDFERLKEIKELT---NIPLVLHGASGI-PEEQIKKAIKLGIAKINIDTDCRIA 236 (282)
T ss_pred cCCCCccCHHHHHHHHHHh---CCCEEEECCCCC-CHHHHHHHHHcCCCEEEECcHHHHH
Confidence 1111223488899998887 79999999 99 7899999999999999999997644
|
This model represents of one of several subtypes of the class II fructose-1,6-bisphosphate aldolase, an enzyme of glycolysis. The subtypes are split into several models to allow separation of a family of tagatose bisphosphate aldolases. This form is found in Gram-positive bacteria, a variety of Gram-negative, and in amitochondriate protists. The class II enzymes share homology with tagatose bisphosphate aldolase but not with class I aldolase. |
| >PRK09427 bifunctional indole-3-glycerol phosphate synthase/phosphoribosylanthranilate isomerase; Provisional | Back alignment and domain information |
|---|
Probab=98.66 E-value=2.6e-07 Score=90.20 Aligned_cols=141 Identities=17% Similarity=0.199 Sum_probs=102.5
Q ss_pred HHHHHhhcCCcEEEEeecCCCCHHHHHHHHhcCCcEEEEccCCCcH----HHHHHHHhCCCEEEEecCCHHHHHHHHHcC
Q 020013 55 IRKTRSLTERPFGVGVVLAFPHNENIKAILSEKVAVLQVSWGEYSE----ELVLEAHSAGVKVVPQVGSFDEARKAVNAG 130 (332)
Q Consensus 55 i~~~r~~~~~p~gvnl~~~~~~~~~~~~~~~~~~~~I~~~~g~~~~----~~i~~~~~~g~~v~~~v~s~~~a~~a~~~g 130 (332)
++.+|+.++.|+-..=|+. ++.++..+...|+|+|.+-....++ ++++..++.|+.++..|++.+|+..+.+.|
T Consensus 102 l~~vr~~v~~PvLrKDFii--d~~QI~ea~~~GADavLLI~~~L~~~~l~~l~~~a~~lGl~~lvEvh~~~El~~al~~~ 179 (454)
T PRK09427 102 LPIVRAIVTQPILCKDFII--DPYQIYLARYYGADAILLMLSVLDDEQYRQLAAVAHSLNMGVLTEVSNEEELERAIALG 179 (454)
T ss_pred HHHHHHhCCCCEEeccccC--CHHHHHHHHHcCCCchhHHHHhCCHHHHHHHHHHHHHcCCcEEEEECCHHHHHHHHhCC
Confidence 4556666667765543332 3567888888999999875443332 466777888999999999999999999999
Q ss_pred CCEEEEecCCCCcccCCCCchhhhHHHHHHHhCCCCCcEEeecCcCCHHHHHHHHHcCcceeeeccccccCcc
Q 020013 131 VDAIIVQGREAGGHVIGQDGLISLLPMVVDLIGDRDIPIIAAGGIVDARGYVAALSLGAQGICLGTRFVASEE 203 (332)
Q Consensus 131 ~D~ivv~G~eaGGh~~~~~~~~~ll~~i~~~~~~~~iPviaaGGI~~~~~v~~al~~GA~gV~~GT~fl~t~E 203 (332)
++.|-+.++.--... ..+..-.++...++. ++.+|+.+||.+++++..+. .|+|||.+|+++|.++.
T Consensus 180 a~iiGiNnRdL~t~~----vd~~~~~~l~~~ip~-~~~~vseSGI~t~~d~~~~~-~~~davLiG~~lm~~~d 246 (454)
T PRK09427 180 AKVIGINNRNLRDLS----IDLNRTRELAPLIPA-DVIVISESGIYTHAQVRELS-PFANGFLIGSSLMAEDD 246 (454)
T ss_pred CCEEEEeCCCCccce----ECHHHHHHHHhhCCC-CcEEEEeCCCCCHHHHHHHH-hcCCEEEECHHHcCCCC
Confidence 999988777543221 112222233333332 67899999999999998865 58999999999999865
|
|
| >PF05690 ThiG: Thiazole biosynthesis protein ThiG; InterPro: IPR008867 This family consists of several bacterial thiazole biosynthesis protein G sequences | Back alignment and domain information |
|---|
Probab=98.61 E-value=3.6e-07 Score=80.17 Aligned_cols=108 Identities=20% Similarity=0.288 Sum_probs=75.8
Q ss_pred HHHHhCCCEEEEecC-CHHHHHHHHHcCCCEEEEecCCCCcccCCCCchhhhHHHHHHHhCCCCCcEEeecCcCCHHHHH
Q 020013 104 LEAHSAGVKVVPQVG-SFDEARKAVNAGVDAIIVQGREAGGHVIGQDGLISLLPMVVDLIGDRDIPIIAAGGIVDARGYV 182 (332)
Q Consensus 104 ~~~~~~g~~v~~~v~-s~~~a~~a~~~g~D~ivv~G~eaGGh~~~~~~~~~ll~~i~~~~~~~~iPviaaGGI~~~~~v~ 182 (332)
+.+.+.|..|++-++ ++-.+++.++.||.+|---|.--|... |- .....++.+++.. ++|||..+||+++.++.
T Consensus 117 e~Lv~eGF~VlPY~~~D~v~akrL~d~GcaavMPlgsPIGSg~-Gi-~n~~~l~~i~~~~---~vPvIvDAGiG~pSdaa 191 (247)
T PF05690_consen 117 EILVKEGFVVLPYCTDDPVLAKRLEDAGCAAVMPLGSPIGSGR-GI-QNPYNLRIIIERA---DVPVIVDAGIGTPSDAA 191 (247)
T ss_dssp HHHHHTT-EEEEEE-S-HHHHHHHHHTT-SEBEEBSSSTTT----S-STHHHHHHHHHHG---SSSBEEES---SHHHHH
T ss_pred HHHHHCCCEEeecCCCCHHHHHHHHHCCCCEEEecccccccCc-CC-CCHHHHHHHHHhc---CCcEEEeCCCCCHHHHH
Confidence 345568999999886 678899999999999988766544332 22 2346677888877 89999999999999999
Q ss_pred HHHHcCcceeeeccccccCccCC-CCHHHHHHHhc
Q 020013 183 AALSLGAQGICLGTRFVASEESY-AHPEYKRKLVE 216 (332)
Q Consensus 183 ~al~~GA~gV~~GT~fl~t~Es~-~~~~~k~~~~~ 216 (332)
.++++|||+|.+.|++..+++.. .-..+|.++..
T Consensus 192 ~AMElG~daVLvNTAiA~A~dPv~MA~Af~~AV~A 226 (247)
T PF05690_consen 192 QAMELGADAVLVNTAIAKAKDPVAMARAFKLAVEA 226 (247)
T ss_dssp HHHHTT-SEEEESHHHHTSSSHHHHHHHHHHHHHH
T ss_pred HHHHcCCceeehhhHHhccCCHHHHHHHHHHHHHH
Confidence 99999999999999997765532 23455655553
|
ThiG, together with ThiF and ThiH, is proposed to be involved in the synthesis of 4-methyl-5-(b-hydroxyethyl)thiazole (THZ) which is an intermediate in the thiazole production pathway [].; GO: 0009228 thiamine biosynthetic process; PDB: 1WV2_B 1TYG_C 1XM3_B 2HTM_C 2YZR_C. |
| >COG0214 SNZ1 Pyridoxine biosynthesis enzyme [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=98.60 E-value=7.8e-07 Score=77.50 Aligned_cols=185 Identities=18% Similarity=0.270 Sum_probs=119.5
Q ss_pred CCCcHHHHHHHHhCCCceeecCCC-------------CCCHHHHHHHHHHHHhhcCCcEEEEeecCCCCHHHHHHHHhcC
Q 020013 21 DISGPELVAAVANAGGLGLLRAPD-------------WEAPDYLRDLIRKTRSLTERPFGVGVVLAFPHNENIKAILSEK 87 (332)
Q Consensus 21 g~s~~~la~avs~aGglG~i~~~~-------------~~~~e~~~~~i~~~r~~~~~p~gvnl~~~~~~~~~~~~~~~~~ 87 (332)
.+.++|.+.-...+|...++.... +-+|..++ ++.+....|.-..+-+-. ....+++...|
T Consensus 26 DV~n~EQA~IAE~aGAvAVMaLervPaDiR~aGGVaRMaDp~~i~----eim~aVsIPVMAKvRIGH--~~EA~iLealg 99 (296)
T COG0214 26 DVVNAEQARIAEEAGAVAVMALERVPADIRAAGGVARMADPKMIE----EIMDAVSIPVMAKVRIGH--FVEAQILEALG 99 (296)
T ss_pred EecCHHHHHHHHhcCceeEeehhhCcHHHHhccCccccCCHHHHH----HHHHhcccceeeeeecch--hHHHHHHHHhC
Confidence 478999999888899988886532 22344433 333333455433322211 12344566779
Q ss_pred CcEEEEccCCCcHHHHHHHH--hCCCEEEEecCCHHHHHHHHHcCCCEEEEecCCCCcccC-----------------C-
Q 020013 88 VAVLQVSWGEYSEELVLEAH--SAGVKVVPQVGSFDEARKAVNAGVDAIIVQGREAGGHVI-----------------G- 147 (332)
Q Consensus 88 ~~~I~~~~g~~~~~~i~~~~--~~g~~v~~~v~s~~~a~~a~~~g~D~ivv~G~eaGGh~~-----------------~- 147 (332)
+|+|.-+-=..|.+..-.+. +..++.++.+.+.-||.+-...|+..|-..|--+.|... .
T Consensus 100 VD~IDESEVLTPAD~~~Hi~K~~FtVPFVcGarnLgEAlRRI~EGAaMIRTKGEaGTGnv~eAVrHmr~i~~eI~~l~~~ 179 (296)
T COG0214 100 VDMIDESEVLTPADEEFHINKWKFTVPFVCGARNLGEALRRISEGAAMIRTKGEAGTGNVVEAVRHMRKINGEIRRLQSM 179 (296)
T ss_pred CCccccccccCCCchhhhcchhhcccceecCcCcHHHHHHHHhhhHHHHhcCCCCCCCcHHHHHHHHHHHHHHHHHHHcc
Confidence 99985431112333333332 235677788889999998888899888776643333210 0
Q ss_pred -----------CCchhhhHHHHHHHhCCCCCcE--EeecCcCCHHHHHHHHHcCcceeeeccccccCccCCCCHHHHHHH
Q 020013 148 -----------QDGLISLLPMVVDLIGDRDIPI--IAAGGIVDARGYVAALSLGAQGICLGTRFVASEESYAHPEYKRKL 214 (332)
Q Consensus 148 -----------~~~~~~ll~~i~~~~~~~~iPv--iaaGGI~~~~~v~~al~~GA~gV~~GT~fl~t~Es~~~~~~k~~~ 214 (332)
-...+.|+.++.+.- ++|| +++|||.||.|.+-++.+|||||.+||.++.+. .++.+.++|
T Consensus 180 ~edel~~~Ak~~~~p~elv~~~~~~g---rLPVvnFAAGGvATPADAALMM~LGadGVFVGSGIFKS~---~P~~~A~AI 253 (296)
T COG0214 180 TEDELYVVAKELQAPYELVKEVAKLG---RLPVVNFAAGGVATPADAALMMQLGADGVFVGSGIFKSS---NPEKRAKAI 253 (296)
T ss_pred CHHHHHHHHHHhCChHHHHHHHHHhC---CCCeEeecccCcCChhHHHHHHHhCCCeEEecccccCCC---CHHHHHHHH
Confidence 012355666665543 5665 599999999999999999999999999999774 477888888
Q ss_pred hcC
Q 020013 215 VEM 217 (332)
Q Consensus 215 ~~~ 217 (332)
+++
T Consensus 254 V~A 256 (296)
T COG0214 254 VEA 256 (296)
T ss_pred HHH
Confidence 876
|
|
| >cd00958 DhnA Class I fructose-1,6-bisphosphate (FBP) aldolases of the archaeal type (DhnA homologs) found in bacteria and archaea | Back alignment and domain information |
|---|
Probab=98.59 E-value=2.5e-06 Score=76.63 Aligned_cols=175 Identities=20% Similarity=0.262 Sum_probs=104.3
Q ss_pred CCccceec--CCCCCCCCcHH-HHHHHHhCCCceeecCCCCCCHHHHHHHHHHHHhhcCCcEE--E----Eeec-CCCC-
Q 020013 8 GFEYGIVQ--APLGPDISGPE-LVAAVANAGGLGLLRAPDWEAPDYLRDLIRKTRSLTERPFG--V----GVVL-AFPH- 76 (332)
Q Consensus 8 ~~~~Pii~--apM~~g~s~~~-la~avs~aGglG~i~~~~~~~~e~~~~~i~~~r~~~~~p~g--v----nl~~-~~~~- 76 (332)
-+++-+.. +|+. +..+++ ++..+.+.|.-++... |..++...+... .+.++- + ++.. ..+.
T Consensus 5 ~~Dh~~~~~~~p~~-~~~d~~~~~~~~~~~g~~av~v~-----~~~~~~~~~~~~--~~~~~i~~~~~~~~i~~p~~~~~ 76 (235)
T cd00958 5 AVDHGIEHGFGPNP-GLEDPEETVKLAAEGGADAVALT-----KGIARAYGREYA--GDIPLIVKLNGSTSLSPKDDNDK 76 (235)
T ss_pred ecCCcccccCCCCc-cccCHHHHHHHHHhcCCCEEEeC-----hHHHHhcccccC--CCCcEEEEECCCCCCCCCCCCch
Confidence 35677777 8987 677776 5555555554444332 222222111121 111221 1 1111 1111
Q ss_pred --HHHHHHHHhcCCcEE--EEccCCCcH--------HHHHHHHhCCCEEEEecCC----------HHH----HHHHHHcC
Q 020013 77 --NENIKAILSEKVAVL--QVSWGEYSE--------ELVLEAHSAGVKVVPQVGS----------FDE----ARKAVNAG 130 (332)
Q Consensus 77 --~~~~~~~~~~~~~~I--~~~~g~~~~--------~~i~~~~~~g~~v~~~v~s----------~~~----a~~a~~~g 130 (332)
...++.+.+.|++.| ++..+.... ++.+.+++.|++++..+.. .++ ++.+.+.|
T Consensus 77 ~~~~~v~~a~~~Ga~~v~~~~~~~~~~~~~~~~~i~~v~~~~~~~g~~~iie~~~~g~~~~~~~~~~~i~~~~~~a~~~G 156 (235)
T cd00958 77 VLVASVEDAVRLGADAVGVTVYVGSEEEREMLEELARVAAEAHKYGLPLIAWMYPRGPAVKNEKDPDLIAYAARIGAELG 156 (235)
T ss_pred hhhcCHHHHHHCCCCEEEEEEecCCchHHHHHHHHHHHHHHHHHcCCCEEEEEeccCCcccCccCHHHHHHHHHHHHHHC
Confidence 234778888999987 555554221 2223345679998875522 333 44577899
Q ss_pred CCEEEEecCCCCcccCCCCchhhhHHHHHHHhCCCCCcEEeecCc--CCH----HHHHHHHHcCcceeeeccccccCcc
Q 020013 131 VDAIIVQGREAGGHVIGQDGLISLLPMVVDLIGDRDIPIIAAGGI--VDA----RGYVAALSLGAQGICLGTRFVASEE 203 (332)
Q Consensus 131 ~D~ivv~G~eaGGh~~~~~~~~~ll~~i~~~~~~~~iPviaaGGI--~~~----~~v~~al~~GA~gV~~GT~fl~t~E 203 (332)
+|+|.+... ..+..+.++.+.. ++||+++||| .|. +++..++.+||+||.+|+.++..++
T Consensus 157 aD~Ik~~~~----------~~~~~~~~i~~~~---~~pvv~~GG~~~~~~~~~l~~~~~~~~~Ga~gv~vg~~i~~~~d 222 (235)
T cd00958 157 ADIVKTKYT----------GDAESFKEVVEGC---PVPVVIAGGPKKDSEEEFLKMVYDAMEAGAAGVAVGRNIFQRPD 222 (235)
T ss_pred CCEEEecCC----------CCHHHHHHHHhcC---CCCEEEeCCCCCCCHHHHHHHHHHHHHcCCcEEEechhhhcCCC
Confidence 999988321 1245667777665 6999999998 344 4488999999999999999997654
|
Catalysis of the enzymes proceeds via a Schiff-base mechanism like other class I aldolases, although this subfamily is clearly divergent based on sequence similarity to other class I and class II (metal dependent) aldolase subfamilies. |
| >PRK06806 fructose-bisphosphate aldolase; Provisional | Back alignment and domain information |
|---|
Probab=98.58 E-value=5.9e-06 Score=76.03 Aligned_cols=174 Identities=20% Similarity=0.235 Sum_probs=114.2
Q ss_pred CCcHHHHHHHHhCC---Cceeec-C-C---CCCCHHHHHHHHHHHHhhcCCcEEEEeecCCCCHHHHHHHHhcCCcEEEE
Q 020013 22 ISGPELVAAVANAG---GLGLLR-A-P---DWEAPDYLRDLIRKTRSLTERPFGVGVVLAFPHNENIKAILSEKVAVLQV 93 (332)
Q Consensus 22 ~s~~~la~avs~aG---glG~i~-~-~---~~~~~e~~~~~i~~~r~~~~~p~gvnl~~~~~~~~~~~~~~~~~~~~I~~ 93 (332)
+.+.+++.++-++. .-++|- . . .+...+.+...+....+....|+.+++=-- .+.+.++.+++.|++.|++
T Consensus 25 ~~n~e~~~avi~aAe~~~~Pvii~~~~~~~~~~~~~~~~~~~~~~a~~~~vpv~lHlDH~-~~~e~i~~Al~~G~tsVm~ 103 (281)
T PRK06806 25 VANMEMVMGAIKAAEELNSPIILQIAEVRLNHSPLHLIGPLMVAAAKQAKVPVAVHFDHG-MTFEKIKEALEIGFTSVMF 103 (281)
T ss_pred eCCHHHHHHHHHHHHHhCCCEEEEcCcchhccCChHHHHHHHHHHHHHCCCCEEEECCCC-CCHHHHHHHHHcCCCEEEE
Confidence 55666666665542 233331 1 0 123344455555554444567877775322 2367788899999999998
Q ss_pred ccCCCc-HH-------HHHHHHhCCCEEE-----------------EecCCHHHHHHHHH-cCCCEEEE-ecCCCCcccC
Q 020013 94 SWGEYS-EE-------LVLEAHSAGVKVV-----------------PQVGSFDEARKAVN-AGVDAIIV-QGREAGGHVI 146 (332)
Q Consensus 94 ~~g~~~-~~-------~i~~~~~~g~~v~-----------------~~v~s~~~a~~a~~-~g~D~ivv-~G~eaGGh~~ 146 (332)
-....+ .+ +.+.+++.|+.+- ..++++++++.+.+ .|+|++-+ .|+--|....
T Consensus 104 d~s~~~~~eni~~t~~v~~~a~~~gv~veaE~ghlG~~d~~~~~~g~s~t~~eea~~f~~~tg~DyLAvaiG~~hg~~~~ 183 (281)
T PRK06806 104 DGSHLPLEENIQKTKEIVELAKQYGATVEAEIGRVGGSEDGSEDIEMLLTSTTEAKRFAEETDVDALAVAIGNAHGMYNG 183 (281)
T ss_pred cCCCCCHHHHHHHHHHHHHHHHHcCCeEEEEeeeECCccCCcccccceeCCHHHHHHHHHhhCCCEEEEccCCCCCCCCC
Confidence 632222 22 3344455555432 22578999999874 59999987 3443332221
Q ss_pred CCCchhhhHHHHHHHhCCCCCcEEeec--CcCCHHHHHHHHHcCcceeeecccccc
Q 020013 147 GQDGLISLLPMVVDLIGDRDIPIIAAG--GIVDARGYVAALSLGAQGICLGTRFVA 200 (332)
Q Consensus 147 ~~~~~~~ll~~i~~~~~~~~iPviaaG--GI~~~~~v~~al~~GA~gV~~GT~fl~ 200 (332)
.+.-.+..++++.+.+ ++|+++-| || +.+++.+++..|+++|-+.|.+..
T Consensus 184 ~~~l~~~~L~~i~~~~---~iPlV~hG~SGI-~~e~~~~~i~~G~~kinv~T~i~~ 235 (281)
T PRK06806 184 DPNLRFDRLQEINDVV---HIPLVLHGGSGI-SPEDFKKCIQHGIRKINVATATFN 235 (281)
T ss_pred CCccCHHHHHHHHHhc---CCCEEEECCCCC-CHHHHHHHHHcCCcEEEEhHHHHH
Confidence 2234588899999887 79999999 99 899999999999999999999886
|
|
| >PRK13587 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional | Back alignment and domain information |
|---|
Probab=98.57 E-value=3.2e-06 Score=75.94 Aligned_cols=170 Identities=19% Similarity=0.197 Sum_probs=105.8
Q ss_pred cH-HHHHHHHhCCCceeecCCC---C-CCHHHHHHHHHHHHhhcCCcEEEEeecCCCCHHHHHHHHhcCCcEEEEccCC-
Q 020013 24 GP-ELVAAVANAGGLGLLRAPD---W-EAPDYLRDLIRKTRSLTERPFGVGVVLAFPHNENIKAILSEKVAVLQVSWGE- 97 (332)
Q Consensus 24 ~~-~la~avs~aGglG~i~~~~---~-~~~e~~~~~i~~~r~~~~~p~gvnl~~~~~~~~~~~~~~~~~~~~I~~~~g~- 97 (332)
+| ++|..-.+..|.--+.... . ..-+.-.+.++++.+.++.|+-++=-+. ..+.++.+++.|++-|.++...
T Consensus 32 dp~~~a~~~~~~~Ga~~l~ivDLd~a~~~~~~n~~~I~~i~~~~~~pi~vGGGIr--s~e~v~~~l~~Ga~kvvigt~a~ 109 (234)
T PRK13587 32 SAEESIAYYSQFECVNRIHIVDLIGAKAQHAREFDYIKSLRRLTTKDIEVGGGIR--TKSQIMDYFAAGINYCIVGTKGI 109 (234)
T ss_pred CHHHHHHHHHhccCCCEEEEEECcccccCCcchHHHHHHHHhhcCCeEEEcCCcC--CHHHHHHHHHCCCCEEEECchHh
Confidence 55 6777666634433332111 0 0111223456666555566665532222 2567888899999998875211
Q ss_pred CcHHHHHHHHh-CCCEEEEecC-----------------C-HHHHHHHHHcCCCEEEEecCCCCcccCCCCchhhhHHHH
Q 020013 98 YSEELVLEAHS-AGVKVVPQVG-----------------S-FDEARKAVNAGVDAIIVQGREAGGHVIGQDGLISLLPMV 158 (332)
Q Consensus 98 ~~~~~i~~~~~-~g~~v~~~v~-----------------s-~~~a~~a~~~g~D~ivv~G~eaGGh~~~~~~~~~ll~~i 158 (332)
..+++++.+.+ .+-+++..+. + .+-++...+.|+..+++.....-|...| ..+.++.++
T Consensus 110 ~~~~~l~~~~~~fg~~ivvslD~~~g~v~~~gw~~~~~~~~~~~~~~~~~~g~~~ii~tdi~~dGt~~G--~~~~li~~l 187 (234)
T PRK13587 110 QDTDWLKEMAHTFPGRIYLSVDAYGEDIKVNGWEEDTELNLFSFVRQLSDIPLGGIIYTDIAKDGKMSG--PNFELTGQL 187 (234)
T ss_pred cCHHHHHHHHHHcCCCEEEEEEeeCCEEEecCCcccCCCCHHHHHHHHHHcCCCEEEEecccCcCCCCc--cCHHHHHHH
Confidence 23345555433 2323322111 1 3445667788999999866554454322 347788888
Q ss_pred HHHhCCCCCcEEeecCcCCHHHHHHHHHcCcceeeecccccc
Q 020013 159 VDLIGDRDIPIIAAGGIVDARGYVAALSLGAQGICLGTRFVA 200 (332)
Q Consensus 159 ~~~~~~~~iPviaaGGI~~~~~v~~al~~GA~gV~~GT~fl~ 200 (332)
.+.. ++||+++|||++.+++.+++.+|+++|.+||++.-
T Consensus 188 ~~~~---~ipvi~~GGi~s~edi~~l~~~G~~~vivG~a~~~ 226 (234)
T PRK13587 188 VKAT---TIPVIASGGIRHQQDIQRLASLNVHAAIIGKAAHQ 226 (234)
T ss_pred HHhC---CCCEEEeCCCCCHHHHHHHHHcCCCEEEEhHHHHh
Confidence 7765 79999999999999999999999999999999763
|
|
| >PF04481 DUF561: Protein of unknown function (DUF561); InterPro: IPR007570 Protein in this entry are of unknown function and are found in cyanobacteria and the chloroplasts of algae | Back alignment and domain information |
|---|
Probab=98.56 E-value=3e-06 Score=73.31 Aligned_cols=171 Identities=23% Similarity=0.369 Sum_probs=105.6
Q ss_pred ceecCCCCCCCCcHHHHHHHHhC---CCceeecCCCCCCHHHHHHHHHHHHhhcCCcEEEEeecCCCCHHHHHHHHhcCC
Q 020013 12 GIVQAPLGPDISGPELVAAVANA---GGLGLLRAPDWEAPDYLRDLIRKTRSLTERPFGVGVVLAFPHNENIKAILSEKV 88 (332)
Q Consensus 12 Pii~apM~~g~s~~~la~avs~a---GglG~i~~~~~~~~e~~~~~i~~~r~~~~~p~gvnl~~~~~~~~~~~~~~~~~~ 88 (332)
-||.|=+. -+.+.+.++.+| ||.-++-.. .+|+ +++.+++.++.|+.|.-+- .+.+-.+.++|+
T Consensus 16 KVIsGLnN---Fd~~~V~~i~~AA~~ggAt~vDIA--adp~----LV~~~~~~s~lPICVSaVe----p~~f~~aV~AGA 82 (242)
T PF04481_consen 16 KVISGLNN---FDAESVAAIVKAAEIGGATFVDIA--ADPE----LVKLAKSLSNLPICVSAVE----PELFVAAVKAGA 82 (242)
T ss_pred hheeCccc---cCHHHHHHHHHHHHccCCceEEec--CCHH----HHHHHHHhCCCCeEeecCC----HHHHHHHHHhCC
Confidence 45544332 245555555554 676666542 3554 4677788889999997553 455667888999
Q ss_pred cEEEEc-cCCC--------cHHHH---HHHHh--CCCEEEEecC---C----HHHHHHHHHcCCCEEEEecCCCCc--cc
Q 020013 89 AVLQVS-WGEY--------SEELV---LEAHS--AGVKVVPQVG---S----FDEARKAVNAGVDAIIVQGREAGG--HV 145 (332)
Q Consensus 89 ~~I~~~-~g~~--------~~~~i---~~~~~--~g~~v~~~v~---s----~~~a~~a~~~g~D~ivv~G~eaGG--h~ 145 (332)
|.|.++ |..+ .+++. ++.|+ ..+.+-.++. . ++-|...++.|+|.|--+|...-- |.
T Consensus 83 dliEIGNfDsFY~qGr~f~a~eVL~Lt~~tR~LLP~~~LsVTVPHiL~ld~Qv~LA~~L~~~GaDiIQTEGgtss~p~~~ 162 (242)
T PF04481_consen 83 DLIEIGNFDSFYAQGRRFSAEEVLALTRETRSLLPDITLSVTVPHILPLDQQVQLAEDLVKAGADIIQTEGGTSSKPTSP 162 (242)
T ss_pred CEEEecchHHHHhcCCeecHHHHHHHHHHHHHhCCCCceEEecCccccHHHHHHHHHHHHHhCCcEEEcCCCCCCCCCCc
Confidence 999985 2111 12333 33343 2444444443 2 334666788999999765421100 10
Q ss_pred C--C----CCchhhhHHHHHHHhCCCCCcEEeecCcCCHHHHHHHHHcCcceeeeccccc
Q 020013 146 I--G----QDGLISLLPMVVDLIGDRDIPIIAAGGIVDARGYVAALSLGAQGICLGTRFV 199 (332)
Q Consensus 146 ~--~----~~~~~~ll~~i~~~~~~~~iPviaaGGI~~~~~v~~al~~GA~gV~~GT~fl 199 (332)
+ | ..+++.....+.+.+ ++||+.+.|| +.-.+.-++++||+||-+||+.=
T Consensus 163 g~lglIekaapTLAaay~ISr~v---~iPVlcASGl-S~vT~PmAiaaGAsGVGVGSavn 218 (242)
T PF04481_consen 163 GILGLIEKAAPTLAAAYAISRAV---SIPVLCASGL-SAVTAPMAIAAGASGVGVGSAVN 218 (242)
T ss_pred chHHHHHHHhHHHHHHHHHHhcc---CCceEeccCc-chhhHHHHHHcCCcccchhHHhh
Confidence 0 0 012344444555555 8999999999 67999999999999999999864
|
As the family is exclusively found in phototrophic organisms it may play a role in photosynthesis. |
| >CHL00162 thiG thiamin biosynthesis protein G; Validated | Back alignment and domain information |
|---|
Probab=98.54 E-value=9.4e-07 Score=78.41 Aligned_cols=95 Identities=22% Similarity=0.326 Sum_probs=75.5
Q ss_pred HHHHhCCCEEEEecC-CHHHHHHHHHcCCCEEEEecCCCCcccCCCCchhhhHHHHHHHhCCCCCcEEeecCcCCHHHHH
Q 020013 104 LEAHSAGVKVVPQVG-SFDEARKAVNAGVDAIIVQGREAGGHVIGQDGLISLLPMVVDLIGDRDIPIIAAGGIVDARGYV 182 (332)
Q Consensus 104 ~~~~~~g~~v~~~v~-s~~~a~~a~~~g~D~ivv~G~eaGGh~~~~~~~~~ll~~i~~~~~~~~iPviaaGGI~~~~~v~ 182 (332)
+.+-+.|..|++.++ ++--+++.++.||.+|---|.--|... |- .....++.+++.. ++||+..+||++++|+.
T Consensus 131 e~Lv~eGF~VlPY~~~D~v~a~rLed~Gc~aVMPlgsPIGSg~-Gl-~n~~~l~~i~e~~---~vpVivdAGIgt~sDa~ 205 (267)
T CHL00162 131 EFLVKKGFTVLPYINADPMLAKHLEDIGCATVMPLGSPIGSGQ-GL-QNLLNLQIIIENA---KIPVIIDAGIGTPSEAS 205 (267)
T ss_pred HHHHHCCCEEeecCCCCHHHHHHHHHcCCeEEeeccCcccCCC-CC-CCHHHHHHHHHcC---CCcEEEeCCcCCHHHHH
Confidence 344567999999876 788999999999999987665444332 21 2345566677655 79999999999999999
Q ss_pred HHHHcCcceeeeccccccCcc
Q 020013 183 AALSLGAQGICLGTRFVASEE 203 (332)
Q Consensus 183 ~al~~GA~gV~~GT~fl~t~E 203 (332)
.++.+|||||.+.|++..++.
T Consensus 206 ~AmElGaDgVL~nSaIakA~d 226 (267)
T CHL00162 206 QAMELGASGVLLNTAVAQAKN 226 (267)
T ss_pred HHHHcCCCEEeecceeecCCC
Confidence 999999999999999995544
|
|
| >COG0106 HisA Phosphoribosylformimino-5-aminoimidazole carboxamide ribonucleotide (ProFAR) isomerase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.51 E-value=7.9e-06 Score=72.49 Aligned_cols=142 Identities=21% Similarity=0.345 Sum_probs=98.3
Q ss_pred HHHHHHHhhcCCcEEEEeecCCCCHHHHHHHHhcCCcEEEEc-cCC-CcHHHHHHHHhCCCEEEEec-------------
Q 020013 53 DLIRKTRSLTERPFGVGVVLAFPHNENIKAILSEKVAVLQVS-WGE-YSEELVLEAHSAGVKVVPQV------------- 117 (332)
Q Consensus 53 ~~i~~~r~~~~~p~gvnl~~~~~~~~~~~~~~~~~~~~I~~~-~g~-~~~~~i~~~~~~g~~v~~~v------------- 117 (332)
+.++++.+.++.|+-|+=-+. +.+.++.+++.|++.|.+. +.. .|..+.+.+++.|-+++..+
T Consensus 65 ~~i~~i~~~~~~~vQvGGGIR--s~~~v~~ll~~G~~rViiGt~av~~p~~v~~~~~~~g~rivv~lD~r~g~vav~GW~ 142 (241)
T COG0106 65 EAIKEILEATDVPVQVGGGIR--SLEDVEALLDAGVARVIIGTAAVKNPDLVKELCEEYGDRIVVALDARDGKVAVSGWQ 142 (241)
T ss_pred HHHHHHHHhCCCCEEeeCCcC--CHHHHHHHHHCCCCEEEEecceecCHHHHHHHHHHcCCcEEEEEEccCCcccccccc
Confidence 445565555566665542222 3677888999999988774 222 24444445566665554322
Q ss_pred --C--C-HHHHHHHHHcCCCEEEEecCCCCcccCCCCchhhhHHHHHHHhCCCCCcEEeecCcCCHHHHHHHHHc-Ccce
Q 020013 118 --G--S-FDEARKAVNAGVDAIIVQGREAGGHVIGQDGLISLLPMVVDLIGDRDIPIIAAGGIVDARGYVAALSL-GAQG 191 (332)
Q Consensus 118 --~--s-~~~a~~a~~~g~D~ivv~G~eaGGh~~~~~~~~~ll~~i~~~~~~~~iPviaaGGI~~~~~v~~al~~-GA~g 191 (332)
+ + .+.+++..+.|+..|++...+--|...| +.+.++.++.+.+ ++||+++|||++-+|+..+-.+ |..|
T Consensus 143 e~s~~~~~~l~~~~~~~g~~~ii~TdI~~DGtl~G--~n~~l~~~l~~~~---~ipviaSGGv~s~~Di~~l~~~~G~~G 217 (241)
T COG0106 143 EDSGVELEELAKRLEEVGLAHILYTDISRDGTLSG--PNVDLVKELAEAV---DIPVIASGGVSSLDDIKALKELSGVEG 217 (241)
T ss_pred ccccCCHHHHHHHHHhcCCCeEEEEecccccccCC--CCHHHHHHHHHHh---CcCEEEecCcCCHHHHHHHHhcCCCcE
Confidence 1 2 3456677889999999866543343322 3477888998888 8999999999999999999999 9999
Q ss_pred eeeccccccC
Q 020013 192 ICLGTRFVAS 201 (332)
Q Consensus 192 V~~GT~fl~t 201 (332)
|.+|+++..-
T Consensus 218 vIvG~ALy~g 227 (241)
T COG0106 218 VIVGRALYEG 227 (241)
T ss_pred EEEehHHhcC
Confidence 9999998744
|
|
| >cd02803 OYE_like_FMN_family Old yellow enzyme (OYE)-like FMN binding domain | Back alignment and domain information |
|---|
Probab=98.51 E-value=4.9e-06 Score=78.41 Aligned_cols=121 Identities=22% Similarity=0.274 Sum_probs=83.2
Q ss_pred HHHHHhcCCcEEEEccCC---------C-------------------cHHHHHHHHhC---CCEEEEecC---------C
Q 020013 80 IKAILSEKVAVLQVSWGE---------Y-------------------SEELVLEAHSA---GVKVVPQVG---------S 119 (332)
Q Consensus 80 ~~~~~~~~~~~I~~~~g~---------~-------------------~~~~i~~~~~~---g~~v~~~v~---------s 119 (332)
.+.+.++|.|.|.+|.+. + ..++++.+++. ++++...++ +
T Consensus 147 A~~a~~aGfDgveih~~~gyL~~qFlsp~~n~R~d~yGgs~enr~r~~~eii~avr~~~g~d~~i~vris~~~~~~~g~~ 226 (327)
T cd02803 147 ARRAKEAGFDGVEIHGAHGYLLSQFLSPYTNKRTDEYGGSLENRARFLLEIVAAVREAVGPDFPVGVRLSADDFVPGGLT 226 (327)
T ss_pred HHHHHHcCCCEEEEcchhhhHHHHhcCccccCCCcccCCCHHHHHHHHHHHHHHHHHHcCCCceEEEEechhccCCCCCC
Confidence 345667899999998642 1 12455666653 556766554 3
Q ss_pred HHH----HHHHHHcCCCEEEEecCCCCcccC-------CCCchhhhHHHHHHHhCCCCCcEEeecCcCCHHHHHHHHHc-
Q 020013 120 FDE----ARKAVNAGVDAIIVQGREAGGHVI-------GQDGLISLLPMVVDLIGDRDIPIIAAGGIVDARGYVAALSL- 187 (332)
Q Consensus 120 ~~~----a~~a~~~g~D~ivv~G~eaGGh~~-------~~~~~~~ll~~i~~~~~~~~iPviaaGGI~~~~~v~~al~~- 187 (332)
.++ ++.+.+.|+|+|.+.+........ .....+.++..+++.+ ++||++.|||.+++++.++++.
T Consensus 227 ~~e~~~la~~l~~~G~d~i~vs~g~~~~~~~~~~~~~~~~~~~~~~~~~ir~~~---~iPVi~~Ggi~t~~~a~~~l~~g 303 (327)
T cd02803 227 LEEAIEIAKALEEAGVDALHVSGGSYESPPPIIPPPYVPEGYFLELAEKIKKAV---KIPVIAVGGIRDPEVAEEILAEG 303 (327)
T ss_pred HHHHHHHHHHHHHcCCCEEEeCCCCCcccccccCCCCCCcchhHHHHHHHHHHC---CCCEEEeCCCCCHHHHHHHHHCC
Confidence 344 455678899999985532111000 0122356677777776 7999999999999999999998
Q ss_pred CcceeeeccccccCcc
Q 020013 188 GAQGICLGTRFVASEE 203 (332)
Q Consensus 188 GA~gV~~GT~fl~t~E 203 (332)
|||.|.+|+.|+..++
T Consensus 304 ~aD~V~igR~~ladP~ 319 (327)
T cd02803 304 KADLVALGRALLADPD 319 (327)
T ss_pred CCCeeeecHHHHhCcc
Confidence 7999999999998654
|
OYE was the first flavin-dependent enzyme identified, however its true physiological role remains elusive to this day. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase. |
| >COG0069 GltB Glutamate synthase domain 2 [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.46 E-value=4.4e-07 Score=87.94 Aligned_cols=198 Identities=18% Similarity=0.206 Sum_probs=117.6
Q ss_pred hcCCccceecCCCCCCCCcH----HHHHHHHhCCCceeecCCCCCCHHHHHHHHHHHHhhcCCcEEEEeecC--------
Q 020013 6 MLGFEYGIVQAPLGPDISGP----ELVAAVANAGGLGLLRAPDWEAPDYLRDLIRKTRSLTERPFGVGVVLA-------- 73 (332)
Q Consensus 6 ~l~~~~Pii~apM~~g~s~~----~la~avs~aGglG~i~~~~~~~~e~~~~~i~~~r~~~~~p~gvnl~~~-------- 73 (332)
.+.+..|+..+.|+.|.-+. .++.++...|+.---+.++ .+++.....-..+++.....|||+--..
T Consensus 162 ~~~i~~~~~~~aMS~GAlS~eA~~alA~a~~~~G~~sntGEGG-e~~~~~~~~~s~I~QvaSGRFGV~~~yL~~a~~ieI 240 (485)
T COG0069 162 VLELKKRFVTGAMSFGALSKEAHEALARAMNRIGTKSNTGEGG-EDPERYEDGRSAIKQVASGRFGVTPEYLANADAIEI 240 (485)
T ss_pred cceeeecccccccCCccccHHHHHHHHHHHHHhcCcccCCCCC-CCHHHhccccceEEEeccccCccCHHHhCccceEEE
Confidence 36677899999999876543 4666666667544444443 5776653333334444455677642211
Q ss_pred ---C---C----------CHHHHHHHH--hcCCcEEEEc--cCCC----cHHHHHHHHhC--CCEEEEecC---CHHHHH
Q 020013 74 ---F---P----------HNENIKAIL--SEKVAVLQVS--WGEY----SEELVLEAHSA--GVKVVPQVG---SFDEAR 124 (332)
Q Consensus 74 ---~---~----------~~~~~~~~~--~~~~~~I~~~--~g~~----~~~~i~~~~~~--g~~v~~~v~---s~~~a~ 124 (332)
+ | ..+.+.... .-|.+.|+-. .... ...++..+|+. ..+|..++. .++...
T Consensus 241 KiaQGAKPGeGG~Lpg~KV~~~IA~~R~~~pG~~~ISP~pHHDiysieDLaqlI~dLk~~~~~~~I~VKlva~~~v~~ia 320 (485)
T COG0069 241 KIAQGAKPGEGGQLPGEKVTPEIAKTRGSPPGVGLISPPPHHDIYSIEDLAQLIKDLKEANPWAKISVKLVAEHGVGTIA 320 (485)
T ss_pred EeccCCCCCCCCCCCCccCCHHHHHhcCCCCCCCCcCCCCcccccCHHHHHHHHHHHHhcCCCCeEEEEEecccchHHHH
Confidence 1 0 012222221 1244555321 1111 12456666664 244554432 233333
Q ss_pred H-HHHcCCCEEEEecCCCCcccCCC--------CchhhhHHHHHHHhCC----CCCcEEeecCcCCHHHHHHHHHcCcce
Q 020013 125 K-AVNAGVDAIIVQGREAGGHVIGQ--------DGLISLLPMVVDLIGD----RDIPIIAAGGIVDARGYVAALSLGAQG 191 (332)
Q Consensus 125 ~-a~~~g~D~ivv~G~eaGGh~~~~--------~~~~~ll~~i~~~~~~----~~iPviaaGGI~~~~~v~~al~~GA~g 191 (332)
. +.++++|.|++.|.++|.-- .+ .+....++++.+.+.. .++-++++||+.|+.||+.+++||||.
T Consensus 321 agvakA~AD~I~IdG~~GGTGA-sP~~~~~~~GiP~e~glae~~q~L~~~glRd~v~l~~~Ggl~Tg~DVaka~aLGAd~ 399 (485)
T COG0069 321 AGVAKAGADVITIDGADGGTGA-SPLTSIDHAGIPWELGLAETHQTLVLNGLRDKVKLIADGGLRTGADVAKAAALGADA 399 (485)
T ss_pred hhhhhccCCEEEEcCCCCcCCC-CcHhHhhcCCchHHHHHHHHHHHHHHcCCcceeEEEecCCccCHHHHHHHHHhCcch
Confidence 3 67899999999999865421 11 1334445555554421 357899999999999999999999999
Q ss_pred eeeccccccCccCC
Q 020013 192 ICLGTRFVASEESY 205 (332)
Q Consensus 192 V~~GT~fl~t~Es~ 205 (332)
|-+||+.|.+--|-
T Consensus 400 v~~gTa~lia~GCi 413 (485)
T COG0069 400 VGFGTAALVALGCI 413 (485)
T ss_pred hhhchHHHHHhhhH
Confidence 99999999887763
|
|
| >COG0269 SgbH 3-hexulose-6-phosphate synthase and related proteins [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.45 E-value=2.8e-05 Score=67.73 Aligned_cols=197 Identities=17% Similarity=0.205 Sum_probs=122.0
Q ss_pred cceecCCCCCCCCcHHHHHHHH-hCC-CceeecCCC-CCCHHHHHHHHHHHHhh-cCCcEEEEeecCCCCHHHHHHHHhc
Q 020013 11 YGIVQAPLGPDISGPELVAAVA-NAG-GLGLLRAPD-WEAPDYLRDLIRKTRSL-TERPFGVGVVLAFPHNENIKAILSE 86 (332)
Q Consensus 11 ~Pii~apM~~g~s~~~la~avs-~aG-glG~i~~~~-~~~~e~~~~~i~~~r~~-~~~p~gvnl~~~~~~~~~~~~~~~~ 86 (332)
.|++|=.+. ..+-+-|..+. +.+ ..-+|..+. +...+-+ +.++.+|+. .++++-..+-..+.-.-..+.+.++
T Consensus 3 ~p~LQvALD--~~~l~~Ai~~a~~v~~~~diiEvGTpLik~eG~-~aV~~lr~~~pd~~IvAD~Kt~D~G~~e~~ma~~a 79 (217)
T COG0269 3 PPLLQVALD--LLDLEEAIEIAEEVADYVDIIEVGTPLIKAEGM-RAVRALRELFPDKIIVADLKTADAGAIEARMAFEA 79 (217)
T ss_pred CcceEeeec--ccCHHHHHHHHHHhhhcceEEEeCcHHHHHhhH-HHHHHHHHHCCCCeEEeeeeecchhHHHHHHHHHc
Confidence 477777775 33433333333 332 355555431 0011222 445666665 4555555554433323456788899
Q ss_pred CCcEEEEccCCCcHHH----HHHHHhCCCEEEEe---cCCHHHHHHHHH-cCCCEEEEe-cCCCCcccCCCCchhhhHHH
Q 020013 87 KVAVLQVSWGEYSEEL----VLEAHSAGVKVVPQ---VGSFDEARKAVN-AGVDAIIVQ-GREAGGHVIGQDGLISLLPM 157 (332)
Q Consensus 87 ~~~~I~~~~g~~~~~~----i~~~~~~g~~v~~~---v~s~~~a~~a~~-~g~D~ivv~-G~eaGGh~~~~~~~~~ll~~ 157 (332)
|+|++.+. |.-+.+. ++..++.|..+... +.++++..+-++ .|+|+++++ |.++-- .|....+..+..
T Consensus 80 GAd~~tV~-g~A~~~TI~~~i~~A~~~~~~v~iDl~~~~~~~~~~~~l~~~gvd~~~~H~g~D~q~--~G~~~~~~~l~~ 156 (217)
T COG0269 80 GADWVTVL-GAADDATIKKAIKVAKEYGKEVQIDLIGVWDPEQRAKWLKELGVDQVILHRGRDAQA--AGKSWGEDDLEK 156 (217)
T ss_pred CCCEEEEE-ecCCHHHHHHHHHHHHHcCCeEEEEeecCCCHHHHHHHHHHhCCCEEEEEecccHhh--cCCCccHHHHHH
Confidence 99999886 3334433 44556788887754 446777666665 999999993 443321 012233566777
Q ss_pred HHHHhCCCCCcEEeecCcCCHHHHHHHHHcCcceeeeccccccCcc-CCCCHHHHHHHh
Q 020013 158 VVDLIGDRDIPIIAAGGIVDARGYVAALSLGAQGICLGTRFVASEE-SYAHPEYKRKLV 215 (332)
Q Consensus 158 i~~~~~~~~iPviaaGGI~~~~~v~~al~~GA~gV~~GT~fl~t~E-s~~~~~~k~~~~ 215 (332)
+++..+. ..+|=.+||| +++++..+...|++-|++|+++..++. ......+++.+.
T Consensus 157 ik~~~~~-g~~vAVaGGI-~~~~i~~~~~~~~~ivIvGraIt~a~dp~~~a~~~~~~i~ 213 (217)
T COG0269 157 IKKLSDL-GAKVAVAGGI-TPEDIPLFKGIGADIVIVGRAITGAKDPAEAARKFKEEID 213 (217)
T ss_pred HHHhhcc-CceEEEecCC-CHHHHHHHhcCCCCEEEECchhcCCCCHHHHHHHHHHHHh
Confidence 7665521 3789999999 899999999999999999999988876 334455565553
|
|
| >PRK04169 geranylgeranylglyceryl phosphate synthase-like protein; Reviewed | Back alignment and domain information |
|---|
Probab=98.41 E-value=2e-05 Score=70.33 Aligned_cols=175 Identities=16% Similarity=0.189 Sum_probs=103.0
Q ss_pred cceecCCCCCCCCcHHHHHHHHhCCCceeecCCCC-CCHHHHHHHHHHHHhhcCCcEEEEeecCCCCHHHHHHHHhcCCc
Q 020013 11 YGIVQAPLGPDISGPELVAAVANAGGLGLLRAPDW-EAPDYLRDLIRKTRSLTERPFGVGVVLAFPHNENIKAILSEKVA 89 (332)
Q Consensus 11 ~Pii~apM~~g~s~~~la~avs~aGglG~i~~~~~-~~~e~~~~~i~~~r~~~~~p~gvnl~~~~~~~~~~~~~~~~~~~ 89 (332)
+=...+|=- ....+...++++.|.=.++..++. .+.+.+.+.++.+|+ ++.|+-. +.... + .+..++|
T Consensus 10 h~~liDP~k--~~~~~~~~~~~~~gtdai~vGGS~~vt~~~~~~~v~~ik~-~~lPvil--fp~~~--~----~i~~~aD 78 (232)
T PRK04169 10 HVTLLDPDK--PLPDEALEAICESGTDAIIVGGSDGVTEENVDELVKAIKE-YDLPVIL--FPGNI--E----GISPGAD 78 (232)
T ss_pred EEEEECCCC--CCCHHHHHHHHhcCCCEEEEcCCCccchHHHHHHHHHHhc-CCCCEEE--eCCCc--c----ccCcCCC
Confidence 444556753 334445577888886566654433 567888899999998 7777654 22111 1 1123477
Q ss_pred EEEEc---cCCCcHHH-------HHHHHhCCCEEEE-------------e------c-CCHHHHHH-----HHHcCCCEE
Q 020013 90 VLQVS---WGEYSEEL-------VLEAHSAGVKVVP-------------Q------V-GSFDEARK-----AVNAGVDAI 134 (332)
Q Consensus 90 ~I~~~---~g~~~~~~-------i~~~~~~g~~v~~-------------~------v-~s~~~a~~-----a~~~g~D~i 134 (332)
.+.+. -+..+..+ +..++..+..+++ . + .+.++... ..-.|-..+
T Consensus 79 a~l~~svlNs~~~~~iig~~~~~~~~~~~~~le~ip~gYiv~~~~~~va~~~~~~~~~~~~~~~~~~~~lA~~~~g~~~v 158 (232)
T PRK04169 79 AYLFPSVLNSRNPYWIIGAHVEAAPIIKKGGLEVIPEGYIVLNPGSKVAVVGTAAPIPLDKPDIAAYAALAAEYLGMPIV 158 (232)
T ss_pred EEEEEEEecCCCcchHhhHHHHHHHHHhhcCcEECceEEEEECCCCeeeeeeccccCCCChHHHHHHHHHHHHHcCCCeE
Confidence 76542 12223221 2223333332221 0 0 12333222 123465555
Q ss_pred EEecCCCCcccCCCCchhhhHHHHHHHhCCCCC-cEEeecCcCCHHHHHHHHHcCcceeeeccccccCcc
Q 020013 135 IVQGREAGGHVIGQDGLISLLPMVVDLIGDRDI-PIIAAGGIVDARGYVAALSLGAQGICLGTRFVASEE 203 (332)
Q Consensus 135 vv~G~eaGGh~~~~~~~~~ll~~i~~~~~~~~i-PviaaGGI~~~~~v~~al~~GA~gV~~GT~fl~t~E 203 (332)
.++. |+.. +......++.++++.. +. |++..|||.+.+++.+++..|||+|++||.|....+
T Consensus 159 Yle~---gs~~-g~~~~~e~I~~v~~~~---~~~pvivGGGIrs~e~a~~~l~~GAD~VVVGSai~~d~~ 221 (232)
T PRK04169 159 YLEY---GGGA-GDPVPPEMVKAVKKAL---DITPLIYGGGIRSPEQARELMAAGADTIVVGNIIEEDPK 221 (232)
T ss_pred EEEC---CCCC-CCCCCHHHHHHHHHhc---CCCcEEEECCCCCHHHHHHHHHhCCCEEEEChHHhhCHH
Confidence 5542 2222 2224467788888876 66 999999999999999999999999999999985544
|
|
| >PRK14114 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional | Back alignment and domain information |
|---|
Probab=98.41 E-value=1.4e-05 Score=72.00 Aligned_cols=142 Identities=15% Similarity=0.171 Sum_probs=93.4
Q ss_pred HHHHHHHHhhcCCcEEEEeecCCCCHHHHHHHHhcCCcEEEEcc-CCCcHHHHHHHHhCCCEEEEec-------------
Q 020013 52 RDLIRKTRSLTERPFGVGVVLAFPHNENIKAILSEKVAVLQVSW-GEYSEELVLEAHSAGVKVVPQV------------- 117 (332)
Q Consensus 52 ~~~i~~~r~~~~~p~gvnl~~~~~~~~~~~~~~~~~~~~I~~~~-g~~~~~~i~~~~~~g~~v~~~v------------- 117 (332)
.+.++++.+.+ .|+-++=-+. ..+.++.+++.|++-|.++- ....+++++.+.+.+-+++..+
T Consensus 63 ~~~i~~i~~~~-~~v~vGGGIr--s~e~~~~~l~~Ga~rvvigT~a~~~p~~l~~~~~~~~~ivvslD~k~g~v~~~gw~ 139 (241)
T PRK14114 63 LPVLEKLSEFA-EHIQIGGGIR--SLDYAEKLRKLGYRRQIVSSKVLEDPSFLKFLKEIDVEPVFSLDTRGGKVAFKGWL 139 (241)
T ss_pred HHHHHHHHhhc-CcEEEecCCC--CHHHHHHHHHCCCCEEEECchhhCCHHHHHHHHHhCCCEEEEEEccCCEEeeCCCe
Confidence 34455555443 3554432221 25678888899999887652 1123456666654432332211
Q ss_pred --C--C-HHHHHHHHHcCCCEEEEecCCCCcccCCCCchhhhHHHHHHHhCCCCCcEEeecCcCCHHHHHHHHHc-----
Q 020013 118 --G--S-FDEARKAVNAGVDAIIVQGREAGGHVIGQDGLISLLPMVVDLIGDRDIPIIAAGGIVDARGYVAALSL----- 187 (332)
Q Consensus 118 --~--s-~~~a~~a~~~g~D~ivv~G~eaGGh~~~~~~~~~ll~~i~~~~~~~~iPviaaGGI~~~~~v~~al~~----- 187 (332)
+ + .+-+..+.+.|+..|++..-+.-|...| ..+.++.++.+.. ++|||++|||++.+|+.++..+
T Consensus 140 ~~~~~~~~e~~~~~~~~g~~~ii~tdI~rdGt~~G--~d~el~~~l~~~~---~~pviasGGv~s~~Dl~~l~~~~~~~~ 214 (241)
T PRK14114 140 AEEEIDPVSLLKRLKEYGLEEIVHTEIEKDGTLQE--HDFSLTRKIAIEA---EVKVFAAGGISSENSLKTAQRVHRETN 214 (241)
T ss_pred ecCCCCHHHHHHHHHhcCCCEEEEEeechhhcCCC--cCHHHHHHHHHHC---CCCEEEECCCCCHHHHHHHHhcccccC
Confidence 1 2 3446778889999999865543333212 4478888888776 7999999999999999999987
Q ss_pred C-cceeeeccccccC
Q 020013 188 G-AQGICLGTRFVAS 201 (332)
Q Consensus 188 G-A~gV~~GT~fl~t 201 (332)
| ++||.+|++|..-
T Consensus 215 g~v~gvivg~Al~~g 229 (241)
T PRK14114 215 GLLKGVIVGRAFLEG 229 (241)
T ss_pred CcEEEEEEehHHHCC
Confidence 6 9999999997543
|
|
| >PRK11840 bifunctional sulfur carrier protein/thiazole synthase protein; Provisional | Back alignment and domain information |
|---|
Probab=98.37 E-value=4.1e-06 Score=77.41 Aligned_cols=111 Identities=18% Similarity=0.266 Sum_probs=77.3
Q ss_pred HHHHHHHHhC---CCEEEEec-CCHHHHHHHHHcCCCEEEEecCCCCcccCCCCchhhhHHHHHHHhCCCCCcEEeecCc
Q 020013 100 EELVLEAHSA---GVKVVPQV-GSFDEARKAVNAGVDAIIVQGREAGGHVIGQDGLISLLPMVVDLIGDRDIPIIAAGGI 175 (332)
Q Consensus 100 ~~~i~~~~~~---g~~v~~~v-~s~~~a~~a~~~g~D~ivv~G~eaGGh~~~~~~~~~ll~~i~~~~~~~~iPviaaGGI 175 (332)
.+.++..+.. |..+++.| .++..++++.+.||-+|---+.--|+.. + ......+..+.+.. ++||+..+||
T Consensus 184 ~~~v~aa~~L~~~Gf~v~~yc~~d~~~a~~l~~~g~~avmPl~~pIGsg~-g-v~~p~~i~~~~e~~---~vpVivdAGI 258 (326)
T PRK11840 184 VETLKATEILVKEGFQVMVYCSDDPIAAKRLEDAGAVAVMPLGAPIGSGL-G-IQNPYTIRLIVEGA---TVPVLVDAGV 258 (326)
T ss_pred HHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHhcCCEEEeeccccccCCC-C-CCCHHHHHHHHHcC---CCcEEEeCCC
Confidence 4566666654 99996555 5899999999999933322122223222 2 23456677777764 7999999999
Q ss_pred CCHHHHHHHHHcCcceeeeccccccCccCC-CCHHHHHHHh
Q 020013 176 VDARGYVAALSLGAQGICLGTRFVASEESY-AHPEYKRKLV 215 (332)
Q Consensus 176 ~~~~~v~~al~~GA~gV~~GT~fl~t~Es~-~~~~~k~~~~ 215 (332)
++++|++.++.+|||||.+.|++..++.-. ....+|.++.
T Consensus 259 g~~sda~~AmelGadgVL~nSaIa~a~dPv~Ma~A~~~av~ 299 (326)
T PRK11840 259 GTASDAAVAMELGCDGVLMNTAIAEAKNPVLMARAMKLAVE 299 (326)
T ss_pred CCHHHHHHHHHcCCCEEEEcceeccCCCHHHHHHHHHHHHH
Confidence 999999999999999999999998554421 1234454444
|
|
| >cd04723 HisA_HisF Phosphoribosylformimino-5-aminoimidazole carboxamide ribonucleotide (ProFAR) isomerase (HisA) and the cyclase subunit of imidazoleglycerol phosphate synthase (HisF) | Back alignment and domain information |
|---|
Probab=98.37 E-value=3.8e-05 Score=69.00 Aligned_cols=171 Identities=20% Similarity=0.177 Sum_probs=101.5
Q ss_pred CcH-HHHHHHHhCCCceeecCCCC---CCHHHHHHHHHHHHhhcCCcEEEEeecCCCCHHHHHHHHhcCCcEEEEccCCC
Q 020013 23 SGP-ELVAAVANAGGLGLLRAPDW---EAPDYLRDLIRKTRSLTERPFGVGVVLAFPHNENIKAILSEKVAVLQVSWGEY 98 (332)
Q Consensus 23 s~~-~la~avs~aGglG~i~~~~~---~~~e~~~~~i~~~r~~~~~p~gvnl~~~~~~~~~~~~~~~~~~~~I~~~~g~~ 98 (332)
.+| ++|..-.+.|. -.+....+ ...+.-...++++.+.+..|+-++--+. ..+.++.+++.|++-|.++....
T Consensus 35 ~dp~~~a~~~~~~g~-~~l~i~DLd~~~~~~~n~~~i~~i~~~~~~~v~vgGGir--~~edv~~~l~~Ga~~viigt~~~ 111 (233)
T cd04723 35 SDPLDVARAYKELGF-RGLYIADLDAIMGRGDNDEAIRELAAAWPLGLWVDGGIR--SLENAQEWLKRGASRVIVGTETL 111 (233)
T ss_pred CCHHHHHHHHHHCCC-CEEEEEeCccccCCCccHHHHHHHHHhCCCCEEEecCcC--CHHHHHHHHHcCCCeEEEcceec
Confidence 355 56676666653 22211111 1111223455666555555655443332 25678888889988777642211
Q ss_pred cHHHHHH-HHhCCC-EEEEec-------------CCHHH-HHHHHHcCCCEEEEecCCCCcccCCCCchhhhHHHHHHHh
Q 020013 99 SEELVLE-AHSAGV-KVVPQV-------------GSFDE-ARKAVNAGVDAIIVQGREAGGHVIGQDGLISLLPMVVDLI 162 (332)
Q Consensus 99 ~~~~i~~-~~~~g~-~v~~~v-------------~s~~~-a~~a~~~g~D~ivv~G~eaGGh~~~~~~~~~ll~~i~~~~ 162 (332)
..++++. +++.+- +++..+ .++.+ ++...+. ++.+++..-..-|.. ....+.++.++.+..
T Consensus 112 ~~~~~~~~~~~~~~~~iivslD~~~~~~~~~~~~~~~~~~~~~~~~~-~~~li~~di~~~G~~--~g~~~~~~~~i~~~~ 188 (233)
T cd04723 112 PSDDDEDRLAALGEQRLVLSLDFRGGQLLKPTDFIGPEELLRRLAKW-PEELIVLDIDRVGSG--QGPDLELLERLAARA 188 (233)
T ss_pred cchHHHHHHHhcCCCCeEEEEeccCCeeccccCcCCHHHHHHHHHHh-CCeEEEEEcCccccC--CCcCHHHHHHHHHhc
Confidence 1133333 333332 333222 13444 4455666 998888655433322 123467788888766
Q ss_pred CCCCCcEEeecCcCCHHHHHHHHHcCcceeeeccccccCc
Q 020013 163 GDRDIPIIAAGGIVDARGYVAALSLGAQGICLGTRFVASE 202 (332)
Q Consensus 163 ~~~~iPviaaGGI~~~~~v~~al~~GA~gV~~GT~fl~t~ 202 (332)
++||+++|||++.+++.+++.+|+++|.+||++....
T Consensus 189 ---~ipvi~~GGi~s~edi~~l~~~G~~~vivGsal~~g~ 225 (233)
T cd04723 189 ---DIPVIAAGGVRSVEDLELLKKLGASGALVASALHDGG 225 (233)
T ss_pred ---CCCEEEeCCCCCHHHHHHHHHcCCCEEEEehHHHcCC
Confidence 7999999999999999999999999999999987553
|
The ProFAR isomerase catalyzes the fourth step in histidine biosynthesis, an isomerisation of the aminoaldose moiety of ProFAR to the aminoketose of PRFAR (N-(5'-phospho-D-1'-ribulosylformimino)-5-amino-1-(5''-phospho-ribosyl)-4-imidazolecarboxamide). In bacteria and archaea, ProFAR isomerase is encoded by the HisA gene. The Imidazole glycerol phosphate synthase (IGPS) catalyzes the fifth step of histidine biosynthesis, the formation of the imidazole ring. IGPS converts N1-(5'-phosphoribulosyl)-formimino-5-aminoimidazole-4-carboxamide ribonucleotide (PRFAR) to imidazole glycerol phosphate (ImGP) and 5'-(5-aminoimidazole-4-carboxamide) ribonucleotide (AICAR). This conversion involves two tightly coupled reactions in distinct active sites of IGPS. The two catalytic domains can be fused, like in fungi and pl |
| >KOG1606 consensus Stationary phase-induced protein, SOR/SNZ family [Coenzyme transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.35 E-value=7.2e-06 Score=70.48 Aligned_cols=185 Identities=18% Similarity=0.268 Sum_probs=114.8
Q ss_pred CCCcHHHHHHHHhCCCceeecCCC-------------CCCHHHHHHHHHHHHhhcCCcEEEEeecCCCCHHHHHHHHhcC
Q 020013 21 DISGPELVAAVANAGGLGLLRAPD-------------WEAPDYLRDLIRKTRSLTERPFGVGVVLAFPHNENIKAILSEK 87 (332)
Q Consensus 21 g~s~~~la~avs~aGglG~i~~~~-------------~~~~e~~~~~i~~~r~~~~~p~gvnl~~~~~~~~~~~~~~~~~ 87 (332)
-+.+++.+.-..++|.-.++...+ +.+|. .|+++++....|.-...-+-. --..+++...+
T Consensus 27 dVv~~eQA~iAE~aGACaVmalervPadiR~~GgV~RMsDP~----mIKei~~aVsiPVMAk~RiGH--FVEAQIlE~l~ 100 (296)
T KOG1606|consen 27 DVVNAEQARIAEEAGACAVMALERVPADIRAQGGVARMSDPR----MIKEIKNAVSIPVMAKVRIGH--FVEAQILEALG 100 (296)
T ss_pred EecCHHHHHHHHhcCcceEeeeccCCHhHHhcCCeeecCCHH----HHHHHHHhccchhhhhhhhhh--hhHHHHHHHhc
Confidence 367999998888899877776532 11232 345555444444322111100 01234455678
Q ss_pred CcEEEEccCCCcHHHHHHHHhC--CCEEEEecCCHHHHHHHHHcCCCEEEEecCCCCcccC----------C--------
Q 020013 88 VAVLQVSWGEYSEELVLEAHSA--GVKVVPQVGSFDEARKAVNAGVDAIIVQGREAGGHVI----------G-------- 147 (332)
Q Consensus 88 ~~~I~~~~g~~~~~~i~~~~~~--g~~v~~~v~s~~~a~~a~~~g~D~ivv~G~eaGGh~~----------~-------- 147 (332)
+|+|.-+-=..|.++...+.+. .++.++.+.+.-||.+-...|+-.|-.+|--+.|... +
T Consensus 101 vDYiDESEvlt~AD~~hhI~KhnFkvPFvCG~rdlGEALRRI~EGAAMIRtkGeagTG~v~EaVkhvr~i~geir~~~~m 180 (296)
T KOG1606|consen 101 VDYIDESEVLTPADWDHHIEKHNFKVPFVCGCRDLGEALRRIREGAAMIRTKGEAGTGDVSEAVKHVRSINGEIRVLKNM 180 (296)
T ss_pred cCccchhhhcccccccchhhhhcCcCceeeccccHHHHHHHHhhchhhheeccccCCCcHHHHHHHHHHHHHHHHHHHcC
Confidence 8988543111234455555554 4567788889999999999999999888764444210 0
Q ss_pred -C----------CchhhhHHHHHHHhCCCCCcE--EeecCcCCHHHHHHHHHcCcceeeeccccccCccCCCCHHHHHHH
Q 020013 148 -Q----------DGLISLLPMVVDLIGDRDIPI--IAAGGIVDARGYVAALSLGAQGICLGTRFVASEESYAHPEYKRKL 214 (332)
Q Consensus 148 -~----------~~~~~ll~~i~~~~~~~~iPv--iaaGGI~~~~~v~~al~~GA~gV~~GT~fl~t~Es~~~~~~k~~~ 214 (332)
. ...+.|+.+..+.- ++|| +++|||.+|.|++-++.+|+|||.+||.++.+.. +.....+|
T Consensus 181 ~~dev~t~Ak~i~aP~dLv~~t~q~G---rlPVV~FAaGGvaTPADAALmMQLGCdGVFVGSgiFks~d---P~k~a~ai 254 (296)
T KOG1606|consen 181 DDDEVFTFAKEIAAPYDLVKQTKQLG---RLPVVNFAAGGVATPADAALMMQLGCDGVFVGSGIFKSGD---PVKRARAI 254 (296)
T ss_pred CHHHHHHHHHHhcCcHHHHHHHHHcC---CCceEEecccCcCChhHHHHHHHcCCCeEEeccccccCCC---HHHHHHHH
Confidence 0 01244444444322 5776 5999999999999999999999999999887643 44444556
Q ss_pred hcC
Q 020013 215 VEM 217 (332)
Q Consensus 215 ~~~ 217 (332)
+++
T Consensus 255 VqA 257 (296)
T KOG1606|consen 255 VQA 257 (296)
T ss_pred HHH
Confidence 654
|
|
| >TIGR01949 AroFGH_arch predicted phospho-2-dehydro-3-deoxyheptonate aldolase | Back alignment and domain information |
|---|
Probab=98.34 E-value=3e-05 Score=70.76 Aligned_cols=173 Identities=17% Similarity=0.230 Sum_probs=103.2
Q ss_pred CccceecCCCCCCCCcHH-HHHHHHhCCCceeecCCCCCCHHHHHHHHHHHHhhcCCcEEEEe--ecCC---C----CHH
Q 020013 9 FEYGIVQAPLGPDISGPE-LVAAVANAGGLGLLRAPDWEAPDYLRDLIRKTRSLTERPFGVGV--VLAF---P----HNE 78 (332)
Q Consensus 9 ~~~Pii~apM~~g~s~~~-la~avs~aGglG~i~~~~~~~~e~~~~~i~~~r~~~~~p~gvnl--~~~~---~----~~~ 78 (332)
+++-+..+|+. +..+++ ++..+.+.|.-+++..+++ ++... ... .++.++.+.+ -.+. + ...
T Consensus 23 iDh~~l~gp~~-~~~~~~~~~~~a~~~~~~~v~~~p~~-----~~~~~-~~~-~~~~~~~~~~~~~~~~g~~~~~~~~~~ 94 (258)
T TIGR01949 23 MDHGVSNGPIK-GLVDIRKTVNEVAEGGADAVLLHKGI-----VRRGH-RGY-GKDVGLIIHLSASTSLSPDPNDKRIVT 94 (258)
T ss_pred CCCccccCCCC-CcCCHHHHHHHHHhcCCCEEEeCcch-----hhhcc-ccc-CCCCcEEEEEcCCCCCCCCCCcceeee
Confidence 77888888987 677766 5555555565555544322 22111 111 1233333322 1111 1 113
Q ss_pred HHHHHHhcCCcEEEEc--cCCCc-HHHHH-------HHHhCCCEEEEecC---------C---HHH-HHHHHHcCCCEEE
Q 020013 79 NIKAILSEKVAVLQVS--WGEYS-EELVL-------EAHSAGVKVVPQVG---------S---FDE-ARKAVNAGVDAII 135 (332)
Q Consensus 79 ~~~~~~~~~~~~I~~~--~g~~~-~~~i~-------~~~~~g~~v~~~v~---------s---~~~-a~~a~~~g~D~iv 135 (332)
.++.+++.|++.|++- .+... .++++ .+++.|++++..+. + ..+ ++.+.+.|+|+|.
T Consensus 95 ~v~~al~~Ga~~v~~~~~~g~~~~~~~~~~~~~i~~~~~~~g~~liv~~~~~Gvh~~~~~~~~~~~~~~~a~~~GADyik 174 (258)
T TIGR01949 95 TVEDAIRMGADAVSIHVNVGSDTEWEQIRDLGMIAEICDDWGVPLLAMMYPRGPHIDDRDPELVAHAARLGAELGADIVK 174 (258)
T ss_pred eHHHHHHCCCCEEEEEEecCCchHHHHHHHHHHHHHHHHHcCCCEEEEEeccCcccccccHHHHHHHHHHHHHHCCCEEe
Confidence 4778889999988763 22211 22222 23456877665221 2 233 4566789999998
Q ss_pred EecCCCCcccCCCCchhhhHHHHHHHhCCCCCcEEeecCcC--C----HHHHHHHHHcCcceeeeccccccCc
Q 020013 136 VQGREAGGHVIGQDGLISLLPMVVDLIGDRDIPIIAAGGIV--D----ARGYVAALSLGAQGICLGTRFVASE 202 (332)
Q Consensus 136 v~G~eaGGh~~~~~~~~~ll~~i~~~~~~~~iPviaaGGI~--~----~~~v~~al~~GA~gV~~GT~fl~t~ 202 (332)
+.. . .....+.++.+.. ++||+++|||. + .+++.+++.+||+|+.+|+.++..+
T Consensus 175 t~~---~-------~~~~~l~~~~~~~---~iPVva~GGi~~~~~~~~~~~i~~~~~aGa~Gia~g~~i~~~~ 234 (258)
T TIGR01949 175 TPY---T-------GDIDSFRDVVKGC---PAPVVVAGGPKTNSDREFLQMIKDAMEAGAAGVAVGRNIFQHD 234 (258)
T ss_pred ccC---C-------CCHHHHHHHHHhC---CCcEEEecCCCCCCHHHHHHHHHHHHHcCCcEEehhhHhhcCC
Confidence 731 1 1255667776655 79999999996 3 6677888899999999999999664
|
Together these two genes appear to perform the synthesis of 3-dehydroquinate. It is presumed that the substrates and the chemical transformations involved are identical, but this has not yet been proven experimentally. |
| >PF00977 His_biosynth: Histidine biosynthesis protein; InterPro: IPR006062 Histidine is formed by several complex and distinct biochemical reactions catalysed by eight enzymes | Back alignment and domain information |
|---|
Probab=98.31 E-value=6.5e-06 Score=73.74 Aligned_cols=142 Identities=22% Similarity=0.320 Sum_probs=91.3
Q ss_pred HHHHHHHHHhhcCCcEEEEeecCCCCHHHHHHHHhcCCcEEEEccCC-CcHHHHHHHHh-CCC-------------EEEE
Q 020013 51 LRDLIRKTRSLTERPFGVGVVLAFPHNENIKAILSEKVAVLQVSWGE-YSEELVLEAHS-AGV-------------KVVP 115 (332)
Q Consensus 51 ~~~~i~~~r~~~~~p~gvnl~~~~~~~~~~~~~~~~~~~~I~~~~g~-~~~~~i~~~~~-~g~-------------~v~~ 115 (332)
-.+.++++.+.+..|+-++=-+. ..+.++.+++.|++-|.++--. ..+++++++.+ .|- ++..
T Consensus 61 n~~~i~~i~~~~~~~i~vgGGIr--s~ed~~~ll~~Ga~~Vvigt~~~~~~~~l~~~~~~~g~~~ivvslD~~~g~~v~~ 138 (229)
T PF00977_consen 61 NLELIKEIAKETGIPIQVGGGIR--SIEDAERLLDAGADRVVIGTEALEDPELLEELAERYGSQRIVVSLDARDGYKVAT 138 (229)
T ss_dssp HHHHHHHHHHHSSSEEEEESSE---SHHHHHHHHHTT-SEEEESHHHHHCCHHHHHHHHHHGGGGEEEEEEEEETEEEEE
T ss_pred HHHHHHHHHhcCCccEEEeCccC--cHHHHHHHHHhCCCEEEeChHHhhchhHHHHHHHHcCcccEEEEEEeeeceEEEe
Confidence 34667777766666665543332 2567888999999988775110 11234444322 121 1211
Q ss_pred -------ecCCHHHHHHHHHcCCCEEEEecCCCCcccCCCCchhhhHHHHHHHhCCCCCcEEeecCcCCHHHHHHHHHcC
Q 020013 116 -------QVGSFDEARKAVNAGVDAIIVQGREAGGHVIGQDGLISLLPMVVDLIGDRDIPIIAAGGIVDARGYVAALSLG 188 (332)
Q Consensus 116 -------~v~s~~~a~~a~~~g~D~ivv~G~eaGGh~~~~~~~~~ll~~i~~~~~~~~iPviaaGGI~~~~~v~~al~~G 188 (332)
...-.+.++++.+.|+..+++..-+.-|...| ..+.++.++++.. ++|||++|||++.+|+.++...|
T Consensus 139 ~gw~~~~~~~~~~~~~~~~~~g~~~ii~tdi~~dGt~~G--~d~~~~~~l~~~~---~~~viasGGv~~~~Dl~~l~~~G 213 (229)
T PF00977_consen 139 NGWQESSGIDLEEFAKRLEELGAGEIILTDIDRDGTMQG--PDLELLKQLAEAV---NIPVIASGGVRSLEDLRELKKAG 213 (229)
T ss_dssp TTTTEEEEEEHHHHHHHHHHTT-SEEEEEETTTTTTSSS----HHHHHHHHHHH---SSEEEEESS--SHHHHHHHHHTT
T ss_pred cCccccCCcCHHHHHHHHHhcCCcEEEEeeccccCCcCC--CCHHHHHHHHHHc---CCCEEEecCCCCHHHHHHHHHCC
Confidence 11223456678889999999977655554323 3478888988888 79999999999999999999999
Q ss_pred cceeeeccccc
Q 020013 189 AQGICLGTRFV 199 (332)
Q Consensus 189 A~gV~~GT~fl 199 (332)
++||.+|++|.
T Consensus 214 ~~gvivg~al~ 224 (229)
T PF00977_consen 214 IDGVIVGSALH 224 (229)
T ss_dssp ECEEEESHHHH
T ss_pred CcEEEEehHhh
Confidence 99999999985
|
Proteins involved in steps 4 and 6 of the histidine biosynthesis pathway are contained in one family. These enzymes are called His6 and His7 in eukaryotes and HisA and HisF in prokaryotes. HisA is a phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase (5.3.1.16 from EC), involved in the fourth step of histidine biosynthesis. The bacterial HisF protein is a cyclase which catalyzes the cyclization reaction that produces D-erythro-imidazole glycerol phosphate during the sixth step of histidine biosynthesis. The yeast His7 protein is a bifunctional protein which catalyzes an amido-transferase reaction that generates imidazole-glycerol phosphate and 5-aminoimidazol-4-carboxamide. The latter is the ribonucleotide used for purine biosynthesis. The enzyme also catalyzes the cyclization reaction that produces D-erythro-imidazole glycerol phosphate, and is involved in the fifth and sixth steps in histidine biosynthesis.; GO: 0000105 histidine biosynthetic process; PDB: 2VEP_A 2X30_A 1VZW_A 2WJZ_A 2LLE_A 2A0N_A 1THF_D 1GPW_E 1VH7_A 1KA9_F .... |
| >TIGR01769 GGGP geranylgeranylglyceryl phosphate synthase | Back alignment and domain information |
|---|
Probab=98.31 E-value=7.2e-05 Score=65.57 Aligned_cols=154 Identities=18% Similarity=0.177 Sum_probs=95.6
Q ss_pred HHHHHHhCCCceeecCCCC-CCHHHHHHHHHHHHhhcCCcEEEEeecCCCCHHHHHHHHhcCCcEEEEcc---CCCcHHH
Q 020013 27 LVAAVANAGGLGLLRAPDW-EAPDYLRDLIRKTRSLTERPFGVGVVLAFPHNENIKAILSEKVAVLQVSW---GEYSEEL 102 (332)
Q Consensus 27 la~avs~aGglG~i~~~~~-~~~e~~~~~i~~~r~~~~~p~gvnl~~~~~~~~~~~~~~~~~~~~I~~~~---g~~~~~~ 102 (332)
++..+.++|.=.++-.++. .+.+.+.+.++.+|+.++.|+-+ +.... . .+..++|.+.+.. +..+..+
T Consensus 16 ia~~v~~~gtDaI~VGGS~gvt~~~~~~~v~~ik~~~~lPvil--fp~~~--~----~i~~~aD~~~~~sllns~~~~~i 87 (205)
T TIGR01769 16 IAKNAKDAGTDAIMVGGSLGIVESNLDQTVKKIKKITNLPVIL--FPGNV--N----GLSRYADAVFFMSLLNSADTYFI 87 (205)
T ss_pred HHHHHHhcCCCEEEEcCcCCCCHHHHHHHHHHHHhhcCCCEEE--ECCCc--c----ccCcCCCEEEEEEeecCCCcchh
Confidence 4557778876566644332 47888999999999988888765 22111 1 1223577765431 2223221
Q ss_pred H----HH---HHhCCCEEEE-------------ec--------CCHHHHH----HHHHcCCCEEEEecCCCCcccCCCCc
Q 020013 103 V----LE---AHSAGVKVVP-------------QV--------GSFDEAR----KAVNAGVDAIIVQGREAGGHVIGQDG 150 (332)
Q Consensus 103 i----~~---~~~~g~~v~~-------------~v--------~s~~~a~----~a~~~g~D~ivv~G~eaGGh~~~~~~ 150 (332)
+ +. +++.|..+++ .+ .+++++. .+...|.+.|-++...+-+. ..
T Consensus 88 ~g~~~~~~~~~~~~~~e~ip~gYiv~~~~~~v~~v~~a~~ip~~~~e~~~~~a~aa~~~G~~~i~Le~~sGa~~----~v 163 (205)
T TIGR01769 88 VGAQILGAITILKLNLEVIPMAYLIVGPGGAVGYVGKAREIPYNKPEIAAAYCLAAKYFGMKWVYLEAGSGASY----PV 163 (205)
T ss_pred hhHHHHHHHHHHHcCCcccceEEEEECCCCceeeecCcccCCCCCHHHHHHHHHHHHHcCCCEEEEEcCCCCCC----CC
Confidence 1 11 2443433221 11 1344443 35567999888854211111 23
Q ss_pred hhhhHHHHHHHhCCCCCcEEeecCcCCHHHHHHHHHcCcceeeec
Q 020013 151 LISLLPMVVDLIGDRDIPIIAAGGIVDARGYVAALSLGAQGICLG 195 (332)
Q Consensus 151 ~~~ll~~i~~~~~~~~iPviaaGGI~~~~~v~~al~~GA~gV~~G 195 (332)
...++.++++.. ++|++..|||++++++.+++..|||+|++|
T Consensus 164 ~~e~i~~Vk~~~---~~Pv~vGGGIrs~e~a~~l~~~GAD~VVVG 205 (205)
T TIGR01769 164 NPETISLVKKAS---GIPLIVGGGIRSPEIAYEIVLAGADAIVTG 205 (205)
T ss_pred CHHHHHHHHHhh---CCCEEEeCCCCCHHHHHHHHHcCCCEEEeC
Confidence 367788888877 799999999999999999999999999987
|
This model represents geranylgeranylglyceryl phosphate synthase which catalyzes the first committed step in the synthesis of ether-linked membrane lipids in archaea. The active enzyme is reported to be a homopentamer in Methanobacterium thermoautotrophicum but is reported to be a homodimer in Thermoplasma acidophilum. |
| >cd01572 QPRTase Quinolinate phosphoribosyl transferase (QAPRTase or QPRTase), also called nicotinate-nucleotide pyrophosphorylase, is involved in the de novo synthesis of NAD in both prokaryotes and eukaryotes | Back alignment and domain information |
|---|
Probab=98.26 E-value=1e-05 Score=74.09 Aligned_cols=87 Identities=24% Similarity=0.327 Sum_probs=68.1
Q ss_pred HHHHHHhC---CCEEEEecCCHHHHHHHHHcCCCEEEEecCCCCcccCCCCchhhhHHHHHHHhCCCCCcEEeecCcCCH
Q 020013 102 LVLEAHSA---GVKVVPQVGSFDEARKAVNAGVDAIIVQGREAGGHVIGQDGLISLLPMVVDLIGDRDIPIIAAGGIVDA 178 (332)
Q Consensus 102 ~i~~~~~~---g~~v~~~v~s~~~a~~a~~~g~D~ivv~G~eaGGh~~~~~~~~~ll~~i~~~~~~~~iPviaaGGI~~~ 178 (332)
-++.+++. +.++...|.|.++++++.+.|+|+|.+.+. . ...+.++++..+. ++|+.++||| +.
T Consensus 171 ~v~~~r~~~~~~~~Igvev~s~eea~~A~~~gaDyI~ld~~----------~-~e~l~~~~~~~~~-~ipi~AiGGI-~~ 237 (268)
T cd01572 171 AVRRARAAAPFTLKIEVEVETLEQLKEALEAGADIIMLDNM----------S-PEELREAVALLKG-RVLLEASGGI-TL 237 (268)
T ss_pred HHHHHHHhCCCCCeEEEEECCHHHHHHHHHcCCCEEEECCc----------C-HHHHHHHHHHcCC-CCcEEEECCC-CH
Confidence 34455543 567889999999999999999999998432 1 3456666655432 5899999999 89
Q ss_pred HHHHHHHHcCcceeeeccccccC
Q 020013 179 RGYVAALSLGAQGICLGTRFVAS 201 (332)
Q Consensus 179 ~~v~~al~~GA~gV~~GT~fl~t 201 (332)
+++.++.+.|+|++.+|+.....
T Consensus 238 ~ni~~~a~~Gvd~Iav~sl~~~a 260 (268)
T cd01572 238 ENIRAYAETGVDYISVGALTHSA 260 (268)
T ss_pred HHHHHHHHcCCCEEEEEeeecCC
Confidence 99999999999999999976533
|
It catalyses the reaction of quinolinic acid (QA) with 5-phosphoribosyl-1-pyrophosphate (PRPP) in the presence of Mg2+ to produce nicotinic acid mononucleotide (NAMN), pyrophosphate and carbon dioxide. QPRTase functions as a homodimer with two active sites, each formed by the C-terminal region of one subunit and the N-terminal region of the other. |
| >PRK07226 fructose-bisphosphate aldolase; Provisional | Back alignment and domain information |
|---|
Probab=98.23 E-value=8.2e-05 Score=68.22 Aligned_cols=174 Identities=21% Similarity=0.293 Sum_probs=100.9
Q ss_pred CccceecCCCCCCCCcHH-HHHHHHhCCCceeecCCCCCCHHHHHHHHHHHHhhcCCcEEEEee----c-CCCC----HH
Q 020013 9 FEYGIVQAPLGPDISGPE-LVAAVANAGGLGLLRAPDWEAPDYLRDLIRKTRSLTERPFGVGVV----L-AFPH----NE 78 (332)
Q Consensus 9 ~~~Pii~apM~~g~s~~~-la~avs~aGglG~i~~~~~~~~e~~~~~i~~~r~~~~~p~gvnl~----~-~~~~----~~ 78 (332)
+++-+..+|+. +..+++ ++..+...|.-+++.. |..++...+.+ ..+.++.+.+- + +.+. ..
T Consensus 26 ~Dh~~l~gp~~-~~~d~~~~~~~a~~~~~~av~v~-----~~~~~~~~~~~--~~~~~l~~~i~~~~~~~~~~~~~~~~~ 97 (267)
T PRK07226 26 MDHGVSHGPID-GLVDIRDTVNKVAEGGADAVLMH-----KGLARHGHRGY--GRDVGLIVHLSASTSLSPDPNDKVLVG 97 (267)
T ss_pred CCCccccCCCc-CcCCHHHHHHHHHhcCCCEEEeC-----HhHHhhhcccc--CCCCcEEEEEcCCCCCCCCCCcceeee
Confidence 67788888887 577765 4444444454444433 32222211112 11233333211 1 1111 23
Q ss_pred HHHHHHhcCCcEEEEc--cCCCc-H-------HHHHHHHhCCCEEEEe-------c---CCHHH----HHHHHHcCCCEE
Q 020013 79 NIKAILSEKVAVLQVS--WGEYS-E-------ELVLEAHSAGVKVVPQ-------V---GSFDE----ARKAVNAGVDAI 134 (332)
Q Consensus 79 ~~~~~~~~~~~~I~~~--~g~~~-~-------~~i~~~~~~g~~v~~~-------v---~s~~~----a~~a~~~g~D~i 134 (332)
.++.+++.|++.|.+- .|... . ++.+.+++.|++++.. + .+.++ ++.+.+.|+|+|
T Consensus 98 ~ve~A~~~Gad~v~~~~~~g~~~~~~~~~~~~~v~~~~~~~g~pl~vi~~~~g~~~e~~~~~~~i~~a~~~a~e~GAD~v 177 (267)
T PRK07226 98 TVEEAIKLGADAVSVHVNVGSETEAEMLEDLGEVAEECEEWGMPLLAMMYPRGPGIKNEYDPEVVAHAARVAAELGADIV 177 (267)
T ss_pred cHHHHHHcCCCEEEEEEecCChhHHHHHHHHHHHHHHHHHcCCcEEEEEecCCCccCCCccHHHHHHHHHHHHHHCCCEE
Confidence 4677889999988764 34321 1 2223345578877654 1 13333 456778999999
Q ss_pred EEecCCCCcccCCCCchhhhHHHHHHHhCCCCCcEEeecCcC--CHHHHH----HHHHcCcceeeeccccccCcc
Q 020013 135 IVQGREAGGHVIGQDGLISLLPMVVDLIGDRDIPIIAAGGIV--DARGYV----AALSLGAQGICLGTRFVASEE 203 (332)
Q Consensus 135 vv~G~eaGGh~~~~~~~~~ll~~i~~~~~~~~iPviaaGGI~--~~~~v~----~al~~GA~gV~~GT~fl~t~E 203 (332)
... + .| ...++.++.+.. ++||+++|||. |.+++. +++.+||+|+.+|+.++..+.
T Consensus 178 Kt~-~--~~-------~~~~l~~~~~~~---~ipV~a~GGi~~~~~~~~l~~v~~~~~aGA~Gis~gr~i~~~~~ 239 (267)
T PRK07226 178 KTN-Y--TG-------DPESFREVVEGC---PVPVVIAGGPKTDTDREFLEMVRDAMEAGAAGVAVGRNVFQHED 239 (267)
T ss_pred eeC-C--CC-------CHHHHHHHHHhC---CCCEEEEeCCCCCCHHHHHHHHHHHHHcCCcEEehhhhhhcCCC
Confidence 774 1 11 245667776654 69999999997 555544 446999999999999986543
|
|
| >KOG4202 consensus Phosphoribosylanthranilate isomerase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.23 E-value=6.5e-06 Score=68.93 Aligned_cols=124 Identities=22% Similarity=0.254 Sum_probs=82.0
Q ss_pred CcEEEEeecCCCCHHHHHHHHhcCCcEEEEccCCCcHHHHHHHHhCCCEEEEecCCHHHHHHHHHc--CCCEEEEecCCC
Q 020013 64 RPFGVGVVLAFPHNENIKAILSEKVAVLQVSWGEYSEELVLEAHSAGVKVVPQVGSFDEARKAVNA--GVDAIIVQGREA 141 (332)
Q Consensus 64 ~p~gvnl~~~~~~~~~~~~~~~~~~~~I~~~~g~~~~~~i~~~~~~g~~v~~~v~s~~~a~~a~~~--g~D~ivv~G~ea 141 (332)
.+.-|++|.++|.+..+..+.+.+.|+|++| |..+.+.+.++-..-++|++.-.+ +..+ ++.. --|.+ +.+.|+
T Consensus 92 ~~~lVGVF~nqp~e~il~~~~~~~ldiVQLH-G~es~~~~~~L~rpvikvfpln~n-~~~~-~~~~vP~~d~~-lvdset 167 (227)
T KOG4202|consen 92 AKKLVGVFVNQPEETILRAADSSDLDIVQLH-GNESRAAFSRLVRPVIKVFPLNAN-EDGK-LLNEVPEEDWI-LVDSET 167 (227)
T ss_pred chheEEEeecCCHHHHHHHHhhcCCceEEec-CcccHHHHHHhCCceEEEEecCch-hhhH-hhccCCchhhe-eecccc
Confidence 4556889999998778888888999999999 667777777765545555543222 2222 3322 23444 446677
Q ss_pred CcccCCCCchhhhHH--HHHHHhCCCCCcEEeecCcCCHHHHHHHHH-cCcceeeeccccc
Q 020013 142 GGHVIGQDGLISLLP--MVVDLIGDRDIPIIAAGGIVDARGYVAALS-LGAQGICLGTRFV 199 (332)
Q Consensus 142 GGh~~~~~~~~~ll~--~i~~~~~~~~iPviaaGGI~~~~~v~~al~-~GA~gV~~GT~fl 199 (332)
||.. ....|..+. .++. .-|++.|||+ +|+|+.+||. ++.+||-+.+..-
T Consensus 168 GG~G--~~~dW~~~s~~~vr~-----~~~~~LAGGl-tP~NV~dAlsi~~p~gvDVSsGve 220 (227)
T KOG4202|consen 168 GGSG--KGFDWAQFSLPSVRS-----RNGWLLAGGL-TPTNVSDALSILQPDGVDVSSGVE 220 (227)
T ss_pred CcCc--CccCHHHhcCccccc-----cCceEEecCC-CccchHHhhhhcCCceeeccCcee
Confidence 7752 222333221 1221 4579999999 9999999998 6889998877643
|
|
| >PRK07428 nicotinate-nucleotide pyrophosphorylase; Provisional | Back alignment and domain information |
|---|
Probab=98.20 E-value=1.1e-05 Score=74.43 Aligned_cols=91 Identities=19% Similarity=0.286 Sum_probs=68.5
Q ss_pred HHHHHHHHhC---CCEEEEecCCHHHHHHHHHcCCCEEEEecCCCCcccCCCCchhhhHHHHHHHhC--CCCCcEEeecC
Q 020013 100 EELVLEAHSA---GVKVVPQVGSFDEARKAVNAGVDAIIVQGREAGGHVIGQDGLISLLPMVVDLIG--DRDIPIIAAGG 174 (332)
Q Consensus 100 ~~~i~~~~~~---g~~v~~~v~s~~~a~~a~~~g~D~ivv~G~eaGGh~~~~~~~~~ll~~i~~~~~--~~~iPviaaGG 174 (332)
.+.++.+++. ..+|...+.|.+++.++.+.|+|+|.+.+. + ...+.++.+.++ ..++|+.++||
T Consensus 183 ~~av~~~r~~~~~~~~I~VEv~tleea~eA~~~GaD~I~LDn~-------~----~e~l~~av~~~~~~~~~i~leAsGG 251 (288)
T PRK07428 183 GEAITRIRQRIPYPLTIEVETETLEQVQEALEYGADIIMLDNM-------P----VDLMQQAVQLIRQQNPRVKIEASGN 251 (288)
T ss_pred HHHHHHHHHhCCCCCEEEEECCCHHHHHHHHHcCCCEEEECCC-------C----HHHHHHHHHHHHhcCCCeEEEEECC
Confidence 3455556653 467889999999999999999999999533 2 223334333221 12689999999
Q ss_pred cCCHHHHHHHHHcCcceeeeccccccCc
Q 020013 175 IVDARGYVAALSLGAQGICLGTRFVASE 202 (332)
Q Consensus 175 I~~~~~v~~al~~GA~gV~~GT~fl~t~ 202 (332)
| |.+++.++.+.|+|++.+|+.+..++
T Consensus 252 I-t~~ni~~ya~tGvD~Isvgsl~~sa~ 278 (288)
T PRK07428 252 I-TLETIRAVAETGVDYISSSAPITRSP 278 (288)
T ss_pred C-CHHHHHHHHHcCCCEEEEchhhhCCC
Confidence 9 89999999999999999999766443
|
|
| >TIGR01919 hisA-trpF 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase/N-(5'phosphoribosyl)anthranilate isomerase | Back alignment and domain information |
|---|
Probab=98.20 E-value=7.7e-05 Score=67.39 Aligned_cols=142 Identities=17% Similarity=0.070 Sum_probs=89.3
Q ss_pred HHHHHHHhhcCCcEEEEeecCCCCHHHHHHHHhcCCcEEEEccC-CCcHHHHHHH-HhCCCEEEE--ec-----------
Q 020013 53 DLIRKTRSLTERPFGVGVVLAFPHNENIKAILSEKVAVLQVSWG-EYSEELVLEA-HSAGVKVVP--QV----------- 117 (332)
Q Consensus 53 ~~i~~~r~~~~~p~gvnl~~~~~~~~~~~~~~~~~~~~I~~~~g-~~~~~~i~~~-~~~g~~v~~--~v----------- 117 (332)
+.++++.+.+..|+-++=-+. ..+.++.+++.|++-|.++-- ...+++++.+ +..+-+++. .+
T Consensus 64 ~~i~~i~~~~~~~v~vgGGIr--s~e~~~~~l~~Ga~~vvigT~a~~~p~~~~~~~~~~g~~ivvslD~k~~g~~~~v~~ 141 (243)
T TIGR01919 64 MMLEEVVKLLVVVEELSGGRR--DDSSLRAALTGGRARVNGGTAALENPWWAAAVIRYGGDIVAVGLDVLEDGEWHTLGN 141 (243)
T ss_pred HHHHHHHHHCCCCEEEcCCCC--CHHHHHHHHHcCCCEEEECchhhCCHHHHHHHHHHccccEEEEEEEecCCceEEEEC
Confidence 355665555455654432221 256777888889998876411 1223444443 222211111 00
Q ss_pred -----C--CH-HHHHHHHHcCCCEEEEecCCCCcccCCCCchhhhHHHHHHHhCCCCCcEEeecCcCCHHHHHHHH---H
Q 020013 118 -----G--SF-DEARKAVNAGVDAIIVQGREAGGHVIGQDGLISLLPMVVDLIGDRDIPIIAAGGIVDARGYVAAL---S 186 (332)
Q Consensus 118 -----~--s~-~~a~~a~~~g~D~ivv~G~eaGGh~~~~~~~~~ll~~i~~~~~~~~iPviaaGGI~~~~~v~~al---~ 186 (332)
+ ++ +.+++..+.|+..|++...+.-|...| ..+.++.++.+.. ++|||++|||++.+|+.++- .
T Consensus 142 ~Gw~~~~~~~~~~~~~~~~~g~~~ii~tdI~~dGt~~G--~d~~l~~~l~~~~---~~pviasGGv~s~eDl~~l~~l~~ 216 (243)
T TIGR01919 142 RGWSDGGGDLEVLERLLDSGGCSRVVVTDSKKDGLSGG--PNELLLEVVAART---DAIVAASGGSSLLDDLRAIKYLDE 216 (243)
T ss_pred CCeecCCCcHHHHHHHHHhCCCCEEEEEecCCcccCCC--cCHHHHHHHHhhC---CCCEEEECCcCCHHHHHHHHhhcc
Confidence 1 22 445667788999999976554443322 3477888888775 79999999999999998864 4
Q ss_pred cCcceeeeccccccC
Q 020013 187 LGAQGICLGTRFVAS 201 (332)
Q Consensus 187 ~GA~gV~~GT~fl~t 201 (332)
.|++||.+|++|.--
T Consensus 217 ~Gv~gvivg~Al~~g 231 (243)
T TIGR01919 217 GGVSVAIGGKLLYAR 231 (243)
T ss_pred CCeeEEEEhHHHHcC
Confidence 599999999997543
|
This model represents a bifunctional protein posessing both hisA (1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase) and trpF (N-(5'phosphoribosyl)anthranilate isomerase) activities. Thus, it is involved in both the histidine and tryptophan biosynthetic pathways. Enzymes with this property have been described only in the Actinobacteria (High-GC gram-positive). The enzyme is closely related to the monofunctional HisA proteins (TIGR00007) and in Actinobacteria, the classical monofunctional TrpF is generally absent. |
| >TIGR00078 nadC nicotinate-nucleotide pyrophosphorylase | Back alignment and domain information |
|---|
Probab=98.18 E-value=1.7e-05 Score=72.53 Aligned_cols=85 Identities=26% Similarity=0.315 Sum_probs=65.1
Q ss_pred HHHHHHhC---CCEEEEecCCHHHHHHHHHcCCCEEEEecCCCCcccCCCCchhhhHHHHHHHhCCCCCcEEeecCcCCH
Q 020013 102 LVLEAHSA---GVKVVPQVGSFDEARKAVNAGVDAIIVQGREAGGHVIGQDGLISLLPMVVDLIGDRDIPIIAAGGIVDA 178 (332)
Q Consensus 102 ~i~~~~~~---g~~v~~~v~s~~~a~~a~~~g~D~ivv~G~eaGGh~~~~~~~~~ll~~i~~~~~~~~iPviaaGGI~~~ 178 (332)
-++.+++. +.++...+.|.++++++.+.|+|+|.+.+. + ...++++.+.++. .+|++++||| +.
T Consensus 167 av~~~r~~~~~~~~Igvev~t~eea~~A~~~gaDyI~ld~~-------~----~e~lk~~v~~~~~-~ipi~AsGGI-~~ 233 (265)
T TIGR00078 167 AVKRARAAAPFALKIEVEVESLEEAEEAAEAGADIIMLDNM-------K----PEEIKEAVQLLKG-RVLLEASGGI-TL 233 (265)
T ss_pred HHHHHHHhCCCCCeEEEEeCCHHHHHHHHHcCCCEEEECCC-------C----HHHHHHHHHHhcC-CCcEEEECCC-CH
Confidence 34455542 577889999999999999999999988332 1 2345555554422 4899999999 89
Q ss_pred HHHHHHHHcCcceeeeccccc
Q 020013 179 RGYVAALSLGAQGICLGTRFV 199 (332)
Q Consensus 179 ~~v~~al~~GA~gV~~GT~fl 199 (332)
+|+.++.+.|+|++.+|.-+-
T Consensus 234 ~ni~~~a~~Gvd~Isvgait~ 254 (265)
T TIGR00078 234 DNLEEYAETGVDVISSGALTH 254 (265)
T ss_pred HHHHHHHHcCCCEEEeCHHHc
Confidence 999999999999999965443
|
Synonym: quinolinate phosphoribosyltransferase (decarboxylating) |
| >TIGR00735 hisF imidazoleglycerol phosphate synthase, cyclase subunit | Back alignment and domain information |
|---|
Probab=98.18 E-value=7.4e-06 Score=74.56 Aligned_cols=78 Identities=21% Similarity=0.318 Sum_probs=63.9
Q ss_pred HHHHHHHHcCCCEEEEecCCCCcccCCCCchhhhHHHHHHHhCCCCCcEEeecCcCCHHHHHHHHHcCcceeeecccccc
Q 020013 121 DEARKAVNAGVDAIIVQGREAGGHVIGQDGLISLLPMVVDLIGDRDIPIIAAGGIVDARGYVAALSLGAQGICLGTRFVA 200 (332)
Q Consensus 121 ~~a~~a~~~g~D~ivv~G~eaGGh~~~~~~~~~ll~~i~~~~~~~~iPviaaGGI~~~~~v~~al~~GA~gV~~GT~fl~ 200 (332)
+.++...+.|+|.+.+....+.+.. ....+.++.++++.+ ++||++.|||.+.+++.+++.+||++|++||.++.
T Consensus 34 ~~a~~~~~~G~~~l~v~Dl~~~~~~--~~~n~~~i~~i~~~~---~~pv~~~GGi~s~~d~~~~~~~Ga~~vivgt~~~~ 108 (254)
T TIGR00735 34 ELAQRYDEEGADELVFLDITASSEG--RTTMIDVVERTAETV---FIPLTVGGGIKSIEDVDKLLRAGADKVSINTAAVK 108 (254)
T ss_pred HHHHHHHHcCCCEEEEEcCCccccc--ChhhHHHHHHHHHhc---CCCEEEECCCCCHHHHHHHHHcCCCEEEEChhHhh
Confidence 5566777889999999776655432 224578888888877 79999999999999999999999999999999997
Q ss_pred Ccc
Q 020013 201 SEE 203 (332)
Q Consensus 201 t~E 203 (332)
.++
T Consensus 109 ~p~ 111 (254)
T TIGR00735 109 NPE 111 (254)
T ss_pred ChH
Confidence 643
|
|
| >cd01568 QPRTase_NadC Quinolinate phosphoribosyl transferase (QAPRTase or QPRTase), also called nicotinate-nucleotide pyrophosphorylase, is involved in the de novo synthesis of NAD in both prokaryotes and eukaryotes | Back alignment and domain information |
|---|
Probab=98.18 E-value=9.4e-06 Score=74.40 Aligned_cols=89 Identities=27% Similarity=0.334 Sum_probs=66.4
Q ss_pred HHHHHHHhC---CCEEEEecCCHHHHHHHHHcCCCEEEEecCCCCcccCCCCchhhhHHHHHHHhCC-CCCcEEeecCcC
Q 020013 101 ELVLEAHSA---GVKVVPQVGSFDEARKAVNAGVDAIIVQGREAGGHVIGQDGLISLLPMVVDLIGD-RDIPIIAAGGIV 176 (332)
Q Consensus 101 ~~i~~~~~~---g~~v~~~v~s~~~a~~a~~~g~D~ivv~G~eaGGh~~~~~~~~~ll~~i~~~~~~-~~iPviaaGGI~ 176 (332)
.-++.+++. +.++...+.|.+++..+.+.|+|+|.+.+. .+ ..++++.+.++. .++|+.++|||
T Consensus 169 ~~v~~~r~~~~~~~~I~vev~t~eea~~A~~~gaD~I~ld~~-------~~----e~l~~~v~~i~~~~~i~i~asGGI- 236 (269)
T cd01568 169 EAVKRARAAAPFEKKIEVEVETLEEAEEALEAGADIIMLDNM-------SP----EELKEAVKLLKGLPRVLLEASGGI- 236 (269)
T ss_pred HHHHHHHHhCCCCCeEEEecCCHHHHHHHHHcCCCEEEECCC-------CH----HHHHHHHHHhccCCCeEEEEECCC-
Confidence 345666653 467889999999999999999999999433 11 223333333211 26899999999
Q ss_pred CHHHHHHHHHcCcceeeeccccccC
Q 020013 177 DARGYVAALSLGAQGICLGTRFVAS 201 (332)
Q Consensus 177 ~~~~v~~al~~GA~gV~~GT~fl~t 201 (332)
+.+++.++.+.|+|++.+|+.+-..
T Consensus 237 t~~ni~~~a~~Gad~Isvgal~~s~ 261 (269)
T cd01568 237 TLENIRAYAETGVDVISTGALTHSA 261 (269)
T ss_pred CHHHHHHHHHcCCCEEEEcHHHcCC
Confidence 9999999999999999998765544
|
It catalyses the reaction of quinolinic acid (QA) with 5-phosphoribosyl-1-pyrophosphate (PRPP) in the presence of Mg2+ to produce nicotinic acid mononucleotide (NAMN), pyrophosphate and carbon dioxide. QPRTase functions as a homodimer with two active sites, each formed by the C-terminal region of one subunit and the N-terminal region of the other. |
| >TIGR01768 GGGP-family geranylgeranylglyceryl phosphate synthase family protein | Back alignment and domain information |
|---|
Probab=98.18 E-value=0.00017 Score=63.89 Aligned_cols=163 Identities=18% Similarity=0.194 Sum_probs=98.0
Q ss_pred cHHHHHHHHhCCCceeecCCCC-CCHHHHHHHHHHHHhhcCCcEEEEeecCCCCHHHHHHHHhcCCcEEEEcc---CCCc
Q 020013 24 GPELVAAVANAGGLGLLRAPDW-EAPDYLRDLIRKTRSLTERPFGVGVVLAFPHNENIKAILSEKVAVLQVSW---GEYS 99 (332)
Q Consensus 24 ~~~la~avs~aGglG~i~~~~~-~~~e~~~~~i~~~r~~~~~p~gvnl~~~~~~~~~~~~~~~~~~~~I~~~~---g~~~ 99 (332)
..+.+.++++.|.=.++..++. .+.+.+.+.++.+|+.+ .|+-+ +...+ . .+..++|++.+.. +..|
T Consensus 16 ~~~~~~~~~~~gtdai~vGGS~~vt~~~~~~~v~~ik~~~-lPvil--fp~~~--~----~i~~~aDa~l~~svlNs~~~ 86 (223)
T TIGR01768 16 ADEIAKAAAESGTDAILIGGSQGVTYEKTDTLIEALRRYG-LPIIL--FPSNP--T----NVSRDADALFFPSVLNSDDP 86 (223)
T ss_pred cHHHHHHHHhcCCCEEEEcCCCcccHHHHHHHHHHHhccC-CCEEE--eCCCc--c----ccCcCCCEEEEEEeecCCCc
Confidence 5578888989887666654433 57788888999998754 77554 22211 1 1223577765431 2223
Q ss_pred HHH-------HHHHHhCCCEEEE-------------ec-------CCHHHHHH----HHH-cCCCEEEEecCCCCcccCC
Q 020013 100 EEL-------VLEAHSAGVKVVP-------------QV-------GSFDEARK----AVN-AGVDAIIVQGREAGGHVIG 147 (332)
Q Consensus 100 ~~~-------i~~~~~~g~~v~~-------------~v-------~s~~~a~~----a~~-~g~D~ivv~G~eaGGh~~~ 147 (332)
..+ +..+++.+..+++ .+ .+.++... |.+ .|-..|-++ +||.. +
T Consensus 87 ~~iig~~~~~~~~~~~~~~e~ip~gYiv~~~~~~v~~v~~a~~~p~~~~~~aa~~~lA~~~~g~~~vYlE---~gs~~-g 162 (223)
T TIGR01768 87 YWIIGAQIEAAPKFKKIGEEIIPEGYIIVNPGGAAARVTKAKPIPYDKEDLAAYAAMAEEMLGMPIIYLE---AGSGA-P 162 (223)
T ss_pred hHHHhHHHHHHHHHhhhcceecceEEEEECCCcceeecccccccCCCcHHHHHHHHHHHHHcCCcEEEEE---ecCCC-C
Confidence 221 2222322222221 01 12222221 122 477777775 23322 2
Q ss_pred CCchhhhHHHHHHHhCCCCCcEEeecCcCCHHHHHHHHHcCcceeeeccccccC
Q 020013 148 QDGLISLLPMVVDLIGDRDIPIIAAGGIVDARGYVAALSLGAQGICLGTRFVAS 201 (332)
Q Consensus 148 ~~~~~~ll~~i~~~~~~~~iPviaaGGI~~~~~v~~al~~GA~gV~~GT~fl~t 201 (332)
.......+..+++.+. ++|++..|||.+.+++.+++.+|||+|++||.+...
T Consensus 163 ~~v~~e~i~~v~~~~~--~~pl~vGGGIrs~e~a~~l~~aGAD~VVVGs~~~~d 214 (223)
T TIGR01768 163 EPVPPELVAEVKKVLD--KARLFVGGGIRSVEKAREMAEAGADTIVTGNVIEED 214 (223)
T ss_pred CCcCHHHHHHHHHHcC--CCCEEEecCCCCHHHHHHHHHcCCCEEEECcHHhhC
Confidence 2233567777777653 699999999999999999999999999999998754
|
This model represents a family of sequences including geranylgeranylglyceryl phosphate synthase which catalyzes the first committed step in the synthesis of ether-linked membrane lipids in archaea. The clade of bacterial sequences may have the same function or a closely related function. This model supercedes TIGR00265, which has been retired. |
| >COG2022 ThiG Uncharacterized enzyme of thiazole biosynthesis [Nucleotide transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.18 E-value=1.4e-05 Score=69.84 Aligned_cols=96 Identities=24% Similarity=0.353 Sum_probs=75.0
Q ss_pred HHHHhCCCEEEEecC-CHHHHHHHHHcCCCEEEEecCCCCcccCCCCchhhhHHHHHHHhCCCCCcEEeecCcCCHHHHH
Q 020013 104 LEAHSAGVKVVPQVG-SFDEARKAVNAGVDAIIVQGREAGGHVIGQDGLISLLPMVVDLIGDRDIPIIAAGGIVDARGYV 182 (332)
Q Consensus 104 ~~~~~~g~~v~~~v~-s~~~a~~a~~~g~D~ivv~G~eaGGh~~~~~~~~~ll~~i~~~~~~~~iPviaaGGI~~~~~v~ 182 (332)
+.+-+.|..|++.++ ++-.+++.++.||-+|.--|.--|... |. .....+.-+.+.. ++|||..-||+++.++.
T Consensus 124 e~Lv~eGF~VlPY~~dD~v~arrLee~GcaavMPl~aPIGSg~-G~-~n~~~l~iiie~a---~VPviVDAGiG~pSdAa 198 (262)
T COG2022 124 EQLVKEGFVVLPYTTDDPVLARRLEEAGCAAVMPLGAPIGSGL-GL-QNPYNLEIIIEEA---DVPVIVDAGIGTPSDAA 198 (262)
T ss_pred HHHHhCCCEEeeccCCCHHHHHHHHhcCceEeccccccccCCc-Cc-CCHHHHHHHHHhC---CCCEEEeCCCCChhHHH
Confidence 345567999999887 678899999999998876544333322 22 2244566677766 89999999999999999
Q ss_pred HHHHcCcceeeeccccccCccC
Q 020013 183 AALSLGAQGICLGTRFVASEES 204 (332)
Q Consensus 183 ~al~~GA~gV~~GT~fl~t~Es 204 (332)
.++.+|+|+|.+-|++..++.-
T Consensus 199 ~aMElG~DaVL~NTAiA~A~DP 220 (262)
T COG2022 199 QAMELGADAVLLNTAIARAKDP 220 (262)
T ss_pred HHHhcccceeehhhHhhccCCh
Confidence 9999999999999998877653
|
|
| >cd04731 HisF The cyclase subunit of imidazoleglycerol phosphate synthase (HisF) | Back alignment and domain information |
|---|
Probab=98.16 E-value=8.7e-06 Score=73.52 Aligned_cols=78 Identities=18% Similarity=0.318 Sum_probs=63.9
Q ss_pred HHHHHHHHHcCCCEEEEecCCCCcccCCCCchhhhHHHHHHHhCCCCCcEEeecCcCCHHHHHHHHHcCcceeeeccccc
Q 020013 120 FDEARKAVNAGVDAIIVQGREAGGHVIGQDGLISLLPMVVDLIGDRDIPIIAAGGIVDARGYVAALSLGAQGICLGTRFV 199 (332)
Q Consensus 120 ~~~a~~a~~~g~D~ivv~G~eaGGh~~~~~~~~~ll~~i~~~~~~~~iPviaaGGI~~~~~v~~al~~GA~gV~~GT~fl 199 (332)
.+.++.+.+.|+|.|++......|.. ....+.++.++++.+ ++||++.|||.+.+++.+++..||++|++||.++
T Consensus 30 ~~~a~~~~~~G~~~i~i~d~~~~~~~--~~~~~~~i~~i~~~~---~~pv~~~GGI~s~~d~~~~l~~G~~~v~ig~~~~ 104 (243)
T cd04731 30 VELAKRYNEQGADELVFLDITASSEG--RETMLDVVERVAEEV---FIPLTVGGGIRSLEDARRLLRAGADKVSINSAAV 104 (243)
T ss_pred HHHHHHHHHCCCCEEEEEcCCccccc--CcccHHHHHHHHHhC---CCCEEEeCCCCCHHHHHHHHHcCCceEEECchhh
Confidence 45567777889999998777655432 224578888888877 7999999999999999999999999999999998
Q ss_pred cCc
Q 020013 200 ASE 202 (332)
Q Consensus 200 ~t~ 202 (332)
..+
T Consensus 105 ~~p 107 (243)
T cd04731 105 ENP 107 (243)
T ss_pred hCh
Confidence 653
|
Imidazole glycerol phosphate synthase (IGPS) catalyzes the fifth step of histidine biosynthesis, the formation of the imidazole ring. IGPS converts N1-(5'-phosphoribulosyl)-formimino-5-aminoimidazole-4-carboxamide ribonucleotide (PRFAR) to imidazole glycerol phosphate (ImGP) and 5'-(5-aminoimidazole-4-carboxamide) ribonucleotide (AICAR). This conversion involves two tightly coupled reactions in distinct active sites of IGPS. The two catalytic domains can be fused, like in fungi and plants, or peformed by a heterodimer (HisH-glutaminase and HisF-cyclase), like in bacteria. |
| >PRK06801 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=98.16 E-value=0.00021 Score=65.93 Aligned_cols=175 Identities=19% Similarity=0.250 Sum_probs=114.6
Q ss_pred CCCcHHHHHHHHhCC---CceeecC-----CCCCCHHHHHHHHHHHHhhcCCcEEEEeecCCCCHHHHHHHHhcCCcEEE
Q 020013 21 DISGPELVAAVANAG---GLGLLRA-----PDWEAPDYLRDLIRKTRSLTERPFGVGVVLAFPHNENIKAILSEKVAVLQ 92 (332)
Q Consensus 21 g~s~~~la~avs~aG---glG~i~~-----~~~~~~e~~~~~i~~~r~~~~~p~gvnl~~~~~~~~~~~~~~~~~~~~I~ 92 (332)
.+.+.+.+.++-+|- ..++|-. ..|...+.+...+..+.+....|+.+++=-- .+.+.++.+++.|.+.|.
T Consensus 24 n~~n~e~~~avi~AAe~~~~PvIl~~~~~~~~~~~~~~~~~~~~~~a~~~~vpV~lHlDH~-~~~e~i~~Ai~~GftSVm 102 (286)
T PRK06801 24 NVLDSHFLRALFAAAKQERSPFIINIAEVHFKYISLESLVEAVKFEAARHDIPVVLNLDHG-LHFEAVVRALRLGFSSVM 102 (286)
T ss_pred eeCCHHHHHHHHHHHHHHCCCEEEEeCcchhhcCCHHHHHHHHHHHHHHCCCCEEEECCCC-CCHHHHHHHHHhCCcEEE
Confidence 356677776666552 2333311 1234556666666666666677888775322 235778889999999999
Q ss_pred EccCCCc-HH-------HHHHHHhCCCEEEE--------------------ecCCHHHHHHHH-HcCCCEEEEecC-CCC
Q 020013 93 VSWGEYS-EE-------LVLEAHSAGVKVVP--------------------QVGSFDEARKAV-NAGVDAIIVQGR-EAG 142 (332)
Q Consensus 93 ~~~g~~~-~~-------~i~~~~~~g~~v~~--------------------~v~s~~~a~~a~-~~g~D~ivv~G~-eaG 142 (332)
+.....| ++ +++.++..|+.|-. .-++++++++.. +.|+|++-+ .. ..-
T Consensus 103 ~D~S~l~~eeNi~~t~~v~~~a~~~gv~VE~ElG~vgg~e~~v~~~~~~~~~~T~pe~a~~f~~~tgvD~LAv-aiGt~H 181 (286)
T PRK06801 103 FDGSTLEYEENVRQTREVVKMCHAVGVSVEAELGAVGGDEGGALYGEADSAKFTDPQLARDFVDRTGIDALAV-AIGNAH 181 (286)
T ss_pred EcCCCCCHHHHHHHHHHHHHHHHHcCCeEEeecCcccCCCCCcccCCcccccCCCHHHHHHHHHHHCcCEEEe-ccCCCC
Confidence 8633333 22 33445556655411 123568888877 789999988 22 111
Q ss_pred cccCC-CCchhhhHHHHHHHhCCCCCcEEeecC--cCCHHHHHHHHHcCcceeeeccccccC
Q 020013 143 GHVIG-QDGLISLLPMVVDLIGDRDIPIIAAGG--IVDARGYVAALSLGAQGICLGTRFVAS 201 (332)
Q Consensus 143 Gh~~~-~~~~~~ll~~i~~~~~~~~iPviaaGG--I~~~~~v~~al~~GA~gV~~GT~fl~t 201 (332)
|...+ +...+.++.++.+.+ ++|+++.|| | +.+++.+++.+|++.|-++|.+...
T Consensus 182 g~y~~~~~l~~e~l~~i~~~~---~~PLVlHGGSgi-~~e~~~~~i~~Gi~KINv~T~~~~a 239 (286)
T PRK06801 182 GKYKGEPKLDFARLAAIHQQT---GLPLVLHGGSGI-SDADFRRAIELGIHKINFYTGMSQA 239 (286)
T ss_pred CCCCCCCCCCHHHHHHHHHhc---CCCEEEECCCCC-CHHHHHHHHHcCCcEEEehhHHHHH
Confidence 11111 224588899998877 799999999 9 6799999999999999999997654
|
|
| >PRK05848 nicotinate-nucleotide pyrophosphorylase; Provisional | Back alignment and domain information |
|---|
Probab=98.15 E-value=1.4e-05 Score=73.10 Aligned_cols=91 Identities=22% Similarity=0.305 Sum_probs=70.2
Q ss_pred HHHHHHHHhC---CCEEEEecCCHHHHHHHHHcCCCEEEEecCCCCcccCCCCchhhhHHHHHHHhCC--CCCcEEeecC
Q 020013 100 EELVLEAHSA---GVKVVPQVGSFDEARKAVNAGVDAIIVQGREAGGHVIGQDGLISLLPMVVDLIGD--RDIPIIAAGG 174 (332)
Q Consensus 100 ~~~i~~~~~~---g~~v~~~v~s~~~a~~a~~~g~D~ivv~G~eaGGh~~~~~~~~~ll~~i~~~~~~--~~iPviaaGG 174 (332)
.+.++.+++. ..++...+.|.++++.+.++|+|+|.++++ .+..+.++++..+. .++.+.++||
T Consensus 169 ~~~v~~~k~~~p~~~~I~VEv~tleea~~A~~~GaDiI~LDn~-----------~~e~l~~~v~~~~~~~~~~~ieAsGg 237 (273)
T PRK05848 169 KEFIQHARKNIPFTAKIEIECESLEEAKNAMNAGADIVMCDNM-----------SVEEIKEVVAYRNANYPHVLLEASGN 237 (273)
T ss_pred HHHHHHHHHhCCCCceEEEEeCCHHHHHHHHHcCCCEEEECCC-----------CHHHHHHHHHHhhccCCCeEEEEECC
Confidence 4556666663 367889999999999999999999988654 23445555544321 2567999999
Q ss_pred cCCHHHHHHHHHcCcceeeeccccccCc
Q 020013 175 IVDARGYVAALSLGAQGICLGTRFVASE 202 (332)
Q Consensus 175 I~~~~~v~~al~~GA~gV~~GT~fl~t~ 202 (332)
| |++++.++..+|+|.+.+|+.+-..+
T Consensus 238 I-t~~ni~~ya~~GvD~IsvG~l~~sa~ 264 (273)
T PRK05848 238 I-TLENINAYAKSGVDAISSGSLIHQAT 264 (273)
T ss_pred C-CHHHHHHHHHcCCCEEEeChhhcCCC
Confidence 9 99999999999999999999765443
|
|
| >PRK08072 nicotinate-nucleotide pyrophosphorylase; Provisional | Back alignment and domain information |
|---|
Probab=98.11 E-value=2.6e-05 Score=71.61 Aligned_cols=86 Identities=26% Similarity=0.251 Sum_probs=66.0
Q ss_pred HHHHHHHhC---CCEEEEecCCHHHHHHHHHcCCCEEEEecCCCCcccCCCCchhhhHHHHHHHhCCCCCcEEeecCcCC
Q 020013 101 ELVLEAHSA---GVKVVPQVGSFDEARKAVNAGVDAIIVQGREAGGHVIGQDGLISLLPMVVDLIGDRDIPIIAAGGIVD 177 (332)
Q Consensus 101 ~~i~~~~~~---g~~v~~~v~s~~~a~~a~~~g~D~ivv~G~eaGGh~~~~~~~~~ll~~i~~~~~~~~iPviaaGGI~~ 177 (332)
+-++.+|+. ..++...++|.++++++.+.|+|+|.++. .....+.++++... .++|+.+.||| +
T Consensus 176 ~~v~~aR~~~~~~~~Igvsv~tleea~~A~~~gaDyI~lD~-----------~~~e~l~~~~~~~~-~~i~i~AiGGI-t 242 (277)
T PRK08072 176 KAVTSVREKLGHMVKIEVETETEEQVREAVAAGADIIMFDN-----------RTPDEIREFVKLVP-SAIVTEASGGI-T 242 (277)
T ss_pred HHHHHHHHhCCCCCEEEEEeCCHHHHHHHHHcCCCEEEECC-----------CCHHHHHHHHHhcC-CCceEEEECCC-C
Confidence 334444443 46788999999999999999999998832 11345666666542 14788899999 9
Q ss_pred HHHHHHHHHcCcceeeeccccc
Q 020013 178 ARGYVAALSLGAQGICLGTRFV 199 (332)
Q Consensus 178 ~~~v~~al~~GA~gV~~GT~fl 199 (332)
.+|+.++.+.|+|++.+|.-.-
T Consensus 243 ~~ni~~~a~~Gvd~IAvg~l~~ 264 (277)
T PRK08072 243 LENLPAYGGTGVDYISLGFLTH 264 (277)
T ss_pred HHHHHHHHHcCCCEEEEChhhc
Confidence 9999999999999999998644
|
|
| >PRK07315 fructose-bisphosphate aldolase; Provisional | Back alignment and domain information |
|---|
Probab=98.10 E-value=0.00036 Score=64.71 Aligned_cols=175 Identities=18% Similarity=0.237 Sum_probs=112.7
Q ss_pred CCCcHHHHHHHHhCC---Cceeec-C-C---CCCC-HHHHHHHHHHHHhhc--CCcEEEEeecCCCCHHHHHHHHhcCCc
Q 020013 21 DISGPELVAAVANAG---GLGLLR-A-P---DWEA-PDYLRDLIRKTRSLT--ERPFGVGVVLAFPHNENIKAILSEKVA 89 (332)
Q Consensus 21 g~s~~~la~avs~aG---glG~i~-~-~---~~~~-~e~~~~~i~~~r~~~--~~p~gvnl~~~~~~~~~~~~~~~~~~~ 89 (332)
.+.+.+.+.++-++- ..++|- . . .|.. .+.+...+..+.+.. ..|+.+++=- .+.+.+..+++.|.+
T Consensus 24 N~~n~e~~~avi~aAe~~~sPvIlq~s~~~~~~~~~~~~~~~~~~~~a~~~~~~vPV~lHLDH--~~~~~i~~ai~~Gft 101 (293)
T PRK07315 24 NTNNLEWTQAILRAAEAKKAPVLIQTSMGAAKYMGGYKVCKNLIENLVESMGITVPVAIHLDH--GHYEDALECIEVGYT 101 (293)
T ss_pred EECCHHHHHHHHHHHHHHCCCEEEEcCccHHhhcCcHHHHHHHHHHHHHHcCCCCcEEEECCC--CCHHHHHHHHHcCCC
Confidence 356777777666552 233331 1 1 1222 344555555554444 4587777532 235678888999999
Q ss_pred EEEEccCCCc-HH-------HHHHHHhCCCEEE---------------Eec-CCHHHHHHHHHcCCCEEEEe-cCCCCcc
Q 020013 90 VLQVSWGEYS-EE-------LVLEAHSAGVKVV---------------PQV-GSFDEARKAVNAGVDAIIVQ-GREAGGH 144 (332)
Q Consensus 90 ~I~~~~g~~~-~~-------~i~~~~~~g~~v~---------------~~v-~s~~~a~~a~~~g~D~ivv~-G~eaGGh 144 (332)
.|.+.....| ++ +++.++..|+.+- ... +++++|+.+.+.|+|++-+- |+-=|-.
T Consensus 102 SVm~d~S~l~~eEni~~t~~v~~~a~~~gv~vE~ElG~i~g~ed~~~g~s~~t~peea~~f~~tgvD~LAv~iG~vHG~y 181 (293)
T PRK07315 102 SIMFDGSHLPVEENLKLAKEVVEKAHAKGISVEAEVGTIGGEEDGIIGKGELAPIEDAKAMVETGIDFLAAGIGNIHGPY 181 (293)
T ss_pred EEEEcCCCCCHHHHHHHHHHHHHHHHHcCCEEEEecCcccCcCccccCccCCCCHHHHHHHHHcCCCEEeeccccccccC
Confidence 9998633322 22 2333444454431 123 78999999999999999772 2211111
Q ss_pred cC-CCCchhhhHHHHHHHhCCCCCcEEeecC--cCCHHHHHHHHHcCcceeeecccccc
Q 020013 145 VI-GQDGLISLLPMVVDLIGDRDIPIIAAGG--IVDARGYVAALSLGAQGICLGTRFVA 200 (332)
Q Consensus 145 ~~-~~~~~~~ll~~i~~~~~~~~iPviaaGG--I~~~~~v~~al~~GA~gV~~GT~fl~ 200 (332)
.. .+.-.+.+++++.+.+. ++|+++-|| | +.+++.+++..|+++|-++|.+..
T Consensus 182 ~t~~k~l~~e~L~~i~~~~~--~iPlVlhGGSGi-~~e~~~~~i~~Gi~KiNv~T~i~~ 237 (293)
T PRK07315 182 PENWEGLDLDHLEKLTEAVP--GFPIVLHGGSGI-PDDQIQEAIKLGVAKVNVNTECQI 237 (293)
T ss_pred CCCCCcCCHHHHHHHHHhcc--CCCEEEECCCCC-CHHHHHHHHHcCCCEEEEccHHHH
Confidence 11 12234888999988872 499999999 9 789999999999999999999885
|
|
| >PRK05742 nicotinate-nucleotide pyrophosphorylase; Provisional | Back alignment and domain information |
|---|
Probab=98.10 E-value=3e-05 Score=71.14 Aligned_cols=85 Identities=27% Similarity=0.349 Sum_probs=65.6
Q ss_pred HHHHHhC--CCEEEEecCCHHHHHHHHHcCCCEEEEecCCCCcccCCCCchhhhHHHHHHHhCCCCCcEEeecCcCCHHH
Q 020013 103 VLEAHSA--GVKVVPQVGSFDEARKAVNAGVDAIIVQGREAGGHVIGQDGLISLLPMVVDLIGDRDIPIIAAGGIVDARG 180 (332)
Q Consensus 103 i~~~~~~--g~~v~~~v~s~~~a~~a~~~g~D~ivv~G~eaGGh~~~~~~~~~ll~~i~~~~~~~~iPviaaGGI~~~~~ 180 (332)
++.+++. +.++...+.|.+++.++.+.|+|+|.+.+. ....++++++..+. ++|+.++||| +.++
T Consensus 180 v~~~r~~~~~~~I~VEv~tleea~eA~~~gaD~I~LD~~-----------~~e~l~~~v~~~~~-~i~leAsGGI-t~~n 246 (277)
T PRK05742 180 VAAAHRIAPGKPVEVEVESLDELRQALAAGADIVMLDEL-----------SLDDMREAVRLTAG-RAKLEASGGI-NEST 246 (277)
T ss_pred HHHHHHhCCCCeEEEEeCCHHHHHHHHHcCCCEEEECCC-----------CHHHHHHHHHHhCC-CCcEEEECCC-CHHH
Confidence 4444443 467889999999999999999999987322 13345555554422 6899999999 8999
Q ss_pred HHHHHHcCcceeeecccccc
Q 020013 181 YVAALSLGAQGICLGTRFVA 200 (332)
Q Consensus 181 v~~al~~GA~gV~~GT~fl~ 200 (332)
+.++.+.|+|++.+|+....
T Consensus 247 i~~~a~tGvD~Isvg~lt~s 266 (277)
T PRK05742 247 LRVIAETGVDYISIGAMTKD 266 (277)
T ss_pred HHHHHHcCCCEEEEChhhcC
Confidence 99999999999999986443
|
|
| >PRK11750 gltB glutamate synthase subunit alpha; Provisional | Back alignment and domain information |
|---|
Probab=98.08 E-value=5.6e-06 Score=89.43 Aligned_cols=104 Identities=18% Similarity=0.196 Sum_probs=71.4
Q ss_pred HHHHHHHhC--CCEEEEecCC---HHH-HHHHHHcCCCEEEEecCCCCcccCCC--------CchhhhHHHHHHHhCC--
Q 020013 101 ELVLEAHSA--GVKVVPQVGS---FDE-ARKAVNAGVDAIIVQGREAGGHVIGQ--------DGLISLLPMVVDLIGD-- 164 (332)
Q Consensus 101 ~~i~~~~~~--g~~v~~~v~s---~~~-a~~a~~~g~D~ivv~G~eaGGh~~~~--------~~~~~ll~~i~~~~~~-- 164 (332)
+++..+|+. +.+|..++.+ +.. +.-+.++|+|+|++.|.++|... .+ .+...-|+++.+.+..
T Consensus 985 qlI~~Lk~~~~~~~I~VKl~a~~~vg~ia~gvaka~aD~I~IdG~~GGTGA-ap~~~~~~~GlP~e~gL~~~~~~L~~~g 1063 (1485)
T PRK11750 985 QLIFDLKQVNPKALVSVKLVSEPGVGTIATGVAKAYADLITISGYDGGTGA-SPLTSVKYAGSPWELGLAETHQALVANG 1063 (1485)
T ss_pred HHHHHHHHhCCCCcEEEEEccCCCccHHHhChhhcCCCEEEEeCCCCCccc-ccHHHHhhCCccHHHHHHHHHHHHHhcC
Confidence 345566654 4566554331 222 22356789999999999866432 22 1112225455444321
Q ss_pred --CCCcEEeecCcCCHHHHHHHHHcCcceeeeccccccCccCC
Q 020013 165 --RDIPIIAAGGIVDARGYVAALSLGAQGICLGTRFVASEESY 205 (332)
Q Consensus 165 --~~iPviaaGGI~~~~~v~~al~~GA~gV~~GT~fl~t~Es~ 205 (332)
.++.++++||+.++.|++.++++|||.|.+||++|.+-.|.
T Consensus 1064 lR~rv~l~a~Ggl~t~~Dv~kA~aLGAd~~~~gt~~lialGCi 1106 (1485)
T PRK11750 1064 LRHKIRLQVDGGLKTGLDVIKAAILGAESFGFGTGPMVALGCK 1106 (1485)
T ss_pred CCcceEEEEcCCcCCHHHHHHHHHcCCcccccchHHHHHcCCH
Confidence 36999999999999999999999999999999999998884
|
|
| >KOG4175 consensus Tryptophan synthase alpha chain [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.06 E-value=0.00027 Score=60.58 Aligned_cols=184 Identities=20% Similarity=0.290 Sum_probs=110.6
Q ss_pred cceecCCCCCCCCcHHHHHHHHhCCCceeecCCC-CC---------------------CHHHHHHHHHHHHhh-cCCcEE
Q 020013 11 YGIVQAPLGPDISGPELVAAVANAGGLGLLRAPD-WE---------------------APDYLRDLIRKTRSL-TERPFG 67 (332)
Q Consensus 11 ~Pii~apM~~g~s~~~la~avs~aGglG~i~~~~-~~---------------------~~e~~~~~i~~~r~~-~~~p~g 67 (332)
.|.|.++.. .+++-.-+...-..||.++|..+- |. +.+.+.+.++++|.. ...|+.
T Consensus 21 vtfiTaG~P-~v~~T~kilkglq~gG~dIIELGvPfSDp~ADGPtIq~~n~~aL~ng~tl~~i~emvk~ar~~gvt~PIi 99 (268)
T KOG4175|consen 21 VTFITAGDP-DVSTTAKILKGLQSGGSDIIELGVPFSDPLADGPTIQAANRRALLNGTTLNSIIEMVKEARPQGVTCPII 99 (268)
T ss_pred EEEEecCCC-cHHHHHHHHHHHhcCCcCeEEecCccCccccCCchhhhhHHHHHHcCCcHHHHHHHHHHhcccCccccee
Confidence 466766663 455544444555678888875421 11 122233344444432 234443
Q ss_pred E----EeecCCCCHHHHHHHHhcCCcEEEEccCCCcHH---HHHHHHhCCCEEEEecC--CHHHHHHHHHcCCCEEEE--
Q 020013 68 V----GVVLAFPHNENIKAILSEKVAVLQVSWGEYSEE---LVLEAHSAGVKVVPQVG--SFDEARKAVNAGVDAIIV-- 136 (332)
Q Consensus 68 v----nl~~~~~~~~~~~~~~~~~~~~I~~~~g~~~~~---~i~~~~~~g~~v~~~v~--s~~~a~~a~~~g~D~ivv-- 136 (332)
. |-++....+.++..+.++|+..+.+. ..||++ +-+.+++.|+.+++-+. +.++-..++..-+|.++.
T Consensus 100 LmgYYNPIl~yG~e~~iq~ak~aGanGfiiv-DlPpEEa~~~Rne~~k~gislvpLvaPsTtdeRmell~~~adsFiYvV 178 (268)
T KOG4175|consen 100 LMGYYNPILRYGVENYIQVAKNAGANGFIIV-DLPPEEAETLRNEARKHGISLVPLVAPSTTDERMELLVEAADSFIYVV 178 (268)
T ss_pred eeecccHHHhhhHHHHHHHHHhcCCCceEec-cCChHHHHHHHHHHHhcCceEEEeeCCCChHHHHHHHHHhhcceEEEE
Confidence 2 22222234678899999999987765 445543 33556788998876553 555555555555665543
Q ss_pred ecCCCCcccCC-CCchhhhHHHHHHHhCCCCCcEEeecCcCCHHHHHHHHHcCcceeeeccccc
Q 020013 137 QGREAGGHVIG-QDGLISLLPMVVDLIGDRDIPIIAAGGIVDARGYVAALSLGAQGICLGTRFV 199 (332)
Q Consensus 137 ~G~eaGGh~~~-~~~~~~ll~~i~~~~~~~~iPviaaGGI~~~~~v~~al~~GA~gV~~GT~fl 199 (332)
.-....|.... ....-+|+++++++.+ +.|+-..-||++++++...-.. ||||++||.++
T Consensus 179 SrmG~TG~~~svn~~l~~L~qrvrk~t~--dtPlAVGFGvst~EHf~qVgsv-aDGVvvGSkiv 239 (268)
T KOG4175|consen 179 SRMGVTGTRESVNEKLQSLLQRVRKATG--DTPLAVGFGVSTPEHFKQVGSV-ADGVVVGSKIV 239 (268)
T ss_pred EeccccccHHHHHHHHHHHHHHHHHhcC--CCceeEeeccCCHHHHHhhhhh-ccceEecHHHH
Confidence 22222222100 1234567778887764 7899999999999999988777 99999999854
|
|
| >PRK04128 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional | Back alignment and domain information |
|---|
Probab=98.05 E-value=0.00018 Score=64.41 Aligned_cols=136 Identities=21% Similarity=0.253 Sum_probs=80.7
Q ss_pred HHHHHHHhhcCCcEEEEeecCCCCHHHHHHHHhcCCcEEEEccCCCcHHHHHHHHh-CCCEEEEec--------------
Q 020013 53 DLIRKTRSLTERPFGVGVVLAFPHNENIKAILSEKVAVLQVSWGEYSEELVLEAHS-AGVKVVPQV-------------- 117 (332)
Q Consensus 53 ~~i~~~r~~~~~p~gvnl~~~~~~~~~~~~~~~~~~~~I~~~~g~~~~~~i~~~~~-~g~~v~~~v-------------- 117 (332)
+.++++.+.++.|+-++=-+. ..+.++.+.+.|++.+.++--...+++++.+.+ .|- ++..+
T Consensus 63 ~~i~~i~~~~~~pv~~gGGIr--s~edv~~l~~~G~~~vivGtaa~~~~~l~~~~~~~g~-ivvslD~~~g~v~~~gw~~ 139 (228)
T PRK04128 63 DVVKNIIRETGLKVQVGGGLR--TYESIKDAYEIGVENVIIGTKAFDLEFLEKVTSEFEG-ITVSLDVKGGRIAVKGWLE 139 (228)
T ss_pred HHHHHHHhhCCCCEEEcCCCC--CHHHHHHHHHCCCCEEEECchhcCHHHHHHHHHHcCC-EEEEEEccCCeEecCCCeE
Confidence 345555554556655432222 246677778889987776421123445555432 222 22111
Q ss_pred ---CCHHHH-HHHHHcCCCEEEEecCCCCcccCCCCchhhhHHHHHHHhCCCCCcEEeecCcCCHHHHHHHHHcCcceee
Q 020013 118 ---GSFDEA-RKAVNAGVDAIIVQGREAGGHVIGQDGLISLLPMVVDLIGDRDIPIIAAGGIVDARGYVAALSLGAQGIC 193 (332)
Q Consensus 118 ---~s~~~a-~~a~~~g~D~ivv~G~eaGGh~~~~~~~~~ll~~i~~~~~~~~iPviaaGGI~~~~~v~~al~~GA~gV~ 193 (332)
.++.+. +.+.+. +..+++..-+.-|...|.. .+.+... ++|||++|||++.+|+.++..+|++||.
T Consensus 140 ~~~~~~~~~~~~~~~~-~~~ii~t~i~~dGt~~G~d-------~l~~~~~--~~pviasGGv~~~~Dl~~l~~~g~~gvi 209 (228)
T PRK04128 140 ESSIKVEDAYEMLKNY-VNRFIYTSIERDGTLTGIE-------EIERFWG--DEEFIYAGGVSSAEDVKKLAEIGFSGVI 209 (228)
T ss_pred cCCCCHHHHHHHHHHH-hCEEEEEeccchhcccCHH-------HHHHhcC--CCCEEEECCCCCHHHHHHHHHCCCCEEE
Confidence 133343 344444 7888886654333321221 3333322 6999999999999999999999999999
Q ss_pred eccccccC
Q 020013 194 LGTRFVAS 201 (332)
Q Consensus 194 ~GT~fl~t 201 (332)
+|++|..-
T Consensus 210 vg~al~~g 217 (228)
T PRK04128 210 IGKALYEG 217 (228)
T ss_pred EEhhhhcC
Confidence 99998654
|
|
| >cd01573 modD_like ModD; Quinolinate phosphoribosyl transferase (QAPRTase or QPRTase) present in some modABC operons in bacteria, which are involved in molybdate transport | Back alignment and domain information |
|---|
Probab=98.04 E-value=3.3e-05 Score=70.90 Aligned_cols=88 Identities=25% Similarity=0.357 Sum_probs=61.9
Q ss_pred HHHHHHHhC--CCEEEEecCCHHHHHHHHHcCCCEEEEecCCCCcccCCCCchhhhHHHHHHHhCCCCCcEEeecCcCCH
Q 020013 101 ELVLEAHSA--GVKVVPQVGSFDEARKAVNAGVDAIIVQGREAGGHVIGQDGLISLLPMVVDLIGDRDIPIIAAGGIVDA 178 (332)
Q Consensus 101 ~~i~~~~~~--g~~v~~~v~s~~~a~~a~~~g~D~ivv~G~eaGGh~~~~~~~~~ll~~i~~~~~~~~iPviaaGGI~~~ 178 (332)
+-++.+++. +.++...+.|.+++..+.+.|+|+|.+.+. .+...-.+++.+.... .++|++++||| +.
T Consensus 172 ~av~~~R~~~~~~~IgVev~t~eea~~A~~~gaD~I~ld~~-------~p~~l~~~~~~~~~~~--~~i~i~AsGGI-~~ 241 (272)
T cd01573 172 KALARLRATAPEKKIVVEVDSLEEALAAAEAGADILQLDKF-------SPEELAELVPKLRSLA--PPVLLAAAGGI-NI 241 (272)
T ss_pred HHHHHHHHhCCCCeEEEEcCCHHHHHHHHHcCCCEEEECCC-------CHHHHHHHHHHHhccC--CCceEEEECCC-CH
Confidence 344555542 357788999999999999999999998433 1111112222222211 16899999999 99
Q ss_pred HHHHHHHHcCcceeeecccc
Q 020013 179 RGYVAALSLGAQGICLGTRF 198 (332)
Q Consensus 179 ~~v~~al~~GA~gV~~GT~f 198 (332)
+++.++.+.|+|++.+|+-+
T Consensus 242 ~ni~~~~~~Gvd~I~vsai~ 261 (272)
T cd01573 242 ENAAAYAAAGADILVTSAPY 261 (272)
T ss_pred HHHHHHHHcCCcEEEEChhh
Confidence 99999999999999666543
|
In general, QPRTases are part of the de novo synthesis pathway of NAD in both prokaryotes and eukaryotes. They catalyse the reaction of quinolinic acid (QA) with 5-phosphoribosyl-1-pyrophosphate (PRPP) in the presence of Mg2+ to produce nicotinic acid mononucleotide (NAMN), pyrophosphate and carbon dioxide. |
| >PRK13306 ulaD 3-keto-L-gulonate-6-phosphate decarboxylase; Provisional | Back alignment and domain information |
|---|
Probab=98.03 E-value=0.00023 Score=63.16 Aligned_cols=182 Identities=13% Similarity=0.076 Sum_probs=106.1
Q ss_pred ecCCCCCCCCcHHHHHHHHhC--CCceeecCCCCCCHHHH-HHHHHHHHhh-cCCcEEEEeecCCCCHHHHHHHHhcCCc
Q 020013 14 VQAPLGPDISGPELVAAVANA--GGLGLLRAPDWEAPDYL-RDLIRKTRSL-TERPFGVGVVLAFPHNENIKAILSEKVA 89 (332)
Q Consensus 14 i~apM~~g~s~~~la~avs~a--GglG~i~~~~~~~~e~~-~~~i~~~r~~-~~~p~gvnl~~~~~~~~~~~~~~~~~~~ 89 (332)
+|-.+. ..+.+-+..+.+. +.+.++..+ +.-.-.. ...++.+++. ++.++-+.+.+.+......+.+.+.|+|
T Consensus 6 l~vALD--~~~~~~a~~l~~~l~~~v~~~kvG-~~l~~~~G~~~i~~lk~~~~~~~v~~DLK~~Di~~~v~~~~~~~Gad 82 (216)
T PRK13306 6 LQIALD--NQDLESAIEDAKKVAEEVDIIEVG-TILLLAEGMKAVRVLRALYPDKIIVADTKIADAGKILAKMAFEAGAD 82 (216)
T ss_pred EEEEec--CCCHHHHHHHHHHccccCCEEEEC-hHHHHHhCHHHHHHHHHHCCCCEEEEEEeecCCcHHHHHHHHHCCCC
Confidence 344553 4555555555432 344555443 2100000 2346667765 5778888988877644444467889999
Q ss_pred EEEEccCCCcHH----HHHHHHhCCCEEEEecC---CHHHHHHHHHcCCCEEEE-ecCCCCcccCCCCchhhhHHHHHHH
Q 020013 90 VLQVSWGEYSEE----LVLEAHSAGVKVVPQVG---SFDEARKAVNAGVDAIIV-QGREAGGHVIGQDGLISLLPMVVDL 161 (332)
Q Consensus 90 ~I~~~~g~~~~~----~i~~~~~~g~~v~~~v~---s~~~a~~a~~~g~D~ivv-~G~eaGGh~~~~~~~~~ll~~i~~~ 161 (332)
.+.+|.. -..+ .++.+++.|.++...+. +.+.++...+.+++.+++ -+..++ ..|.......+..+++.
T Consensus 83 ~vTvH~~-a~~~~i~~~~~~~~~~g~~~~V~llts~~~~~l~~~~~~~~~~~vl~~a~~~~--~~G~v~s~~~~~~ir~~ 159 (216)
T PRK13306 83 WVTVICA-AHIPTIKAALKVAKEFNGEIQIELYGNWTWEQAQQWRDAGISQVIYHRSRDAQ--LAGVAWGEKDLNKVKKL 159 (216)
T ss_pred EEEEeCC-CCHHHHHHHHHHHHHcCCEEEEEECCCCCHHHHHHHHcCChhhhhhhhhhhhh--hcCCCCCHHHHHHHHHH
Confidence 9999943 2344 33444556777765543 456665556666655544 333332 11222222333444444
Q ss_pred hCCCCCcEEeecCcCCHHHHHHHHHcCcceeeeccccccCcc
Q 020013 162 IGDRDIPIIAAGGIVDARGYVAALSLGAQGICLGTRFVASEE 203 (332)
Q Consensus 162 ~~~~~iPviaaGGI~~~~~v~~al~~GA~gV~~GT~fl~t~E 203 (332)
... +..+..+||| +++++......|||.+++|+++..+++
T Consensus 160 ~~~-~~~i~V~gGI-~~~~~~~~~~~~ad~~VvGr~I~~a~d 199 (216)
T PRK13306 160 SDM-GFKVSVTGGL-VVEDLKLFKGIPVKTFIAGRAIRGAAD 199 (216)
T ss_pred hcC-CCeEEEcCCC-CHhhHHHHhcCCCCEEEECCcccCCCC
Confidence 321 3448999999 788888877889999999999776654
|
|
| >PRK13523 NADPH dehydrogenase NamA; Provisional | Back alignment and domain information |
|---|
Probab=98.02 E-value=0.00015 Score=68.59 Aligned_cols=120 Identities=13% Similarity=0.080 Sum_probs=80.0
Q ss_pred HHHHhcCCcEEEEccCC---------C-------------------cHHHHHHHHhC-CCEEEEecC---------CHHH
Q 020013 81 KAILSEKVAVLQVSWGE---------Y-------------------SEELVLEAHSA-GVKVVPQVG---------SFDE 122 (332)
Q Consensus 81 ~~~~~~~~~~I~~~~g~---------~-------------------~~~~i~~~~~~-g~~v~~~v~---------s~~~ 122 (332)
..+.++|.|.|++|.+. + ..++++.+++. +.+|...++ +.++
T Consensus 149 ~~a~~aGfDgVeih~ahGyLl~qFlSp~~N~RtD~yGGslenR~Rf~~eii~~ir~~~~~~v~vRis~~d~~~~G~~~~e 228 (337)
T PRK13523 149 VRAKEAGFDVIEIHGAHGYLINEFLSPLSNKRTDEYGGSPENRYRFLREIIDAVKEVWDGPLFVRISASDYHPGGLTVQD 228 (337)
T ss_pred HHHHHcCCCEEEEccccchHHHHhcCCccCCcCCCCCCCHHHHHHHHHHHHHHHHHhcCCCeEEEecccccCCCCCCHHH
Confidence 34566899999988541 1 11355556653 344544332 4444
Q ss_pred H----HHHHHcCCCEEEEecCCCC--cccCCCCchhhhHHHHHHHhCCCCCcEEeecCcCCHHHHHHHHHcC-cceeeec
Q 020013 123 A----RKAVNAGVDAIIVQGREAG--GHVIGQDGLISLLPMVVDLIGDRDIPIIAAGGIVDARGYVAALSLG-AQGICLG 195 (332)
Q Consensus 123 a----~~a~~~g~D~ivv~G~eaG--Gh~~~~~~~~~ll~~i~~~~~~~~iPviaaGGI~~~~~v~~al~~G-A~gV~~G 195 (332)
. +.+.+.|+|+|-+.+.... -+...+...+.+..++++.+ ++||++.|+|.+++++.++++-| ||.|.+|
T Consensus 229 ~~~i~~~l~~~gvD~i~vs~g~~~~~~~~~~~~~~~~~~~~ik~~~---~ipVi~~G~i~~~~~a~~~l~~g~~D~V~~g 305 (337)
T PRK13523 229 YVQYAKWMKEQGVDLIDVSSGAVVPARIDVYPGYQVPFAEHIREHA---NIATGAVGLITSGAQAEEILQNNRADLIFIG 305 (337)
T ss_pred HHHHHHHHHHcCCCEEEeCCCCCCCCCCCCCccccHHHHHHHHhhc---CCcEEEeCCCCCHHHHHHHHHcCCCChHHhh
Confidence 4 4456789999998543100 00000111356667777776 79999999999999999999987 9999999
Q ss_pred cccccCcc
Q 020013 196 TRFVASEE 203 (332)
Q Consensus 196 T~fl~t~E 203 (332)
..+++.++
T Consensus 306 R~~iadP~ 313 (337)
T PRK13523 306 RELLRNPY 313 (337)
T ss_pred HHHHhCcc
Confidence 99998765
|
|
| >PRK02083 imidazole glycerol phosphate synthase subunit HisF; Provisional | Back alignment and domain information |
|---|
Probab=98.01 E-value=2.5e-05 Score=71.03 Aligned_cols=79 Identities=23% Similarity=0.400 Sum_probs=64.1
Q ss_pred HHHHHHHHHcCCCEEEEecCCCCcccCCCCchhhhHHHHHHHhCCCCCcEEeecCcCCHHHHHHHHHcCcceeeeccccc
Q 020013 120 FDEARKAVNAGVDAIIVQGREAGGHVIGQDGLISLLPMVVDLIGDRDIPIIAAGGIVDARGYVAALSLGAQGICLGTRFV 199 (332)
Q Consensus 120 ~~~a~~a~~~g~D~ivv~G~eaGGh~~~~~~~~~ll~~i~~~~~~~~iPviaaGGI~~~~~v~~al~~GA~gV~~GT~fl 199 (332)
.+.++.+.+.|+|.+.+....+-+. +....+.++.++.+.+ ++||++.|||.+.+++.+++..||++|++||.++
T Consensus 33 ~~~a~~~~~~G~~~i~i~dl~~~~~--~~~~~~~~i~~i~~~~---~ipv~~~GGi~s~~~~~~~l~~Ga~~Viigt~~l 107 (253)
T PRK02083 33 VELAKRYNEEGADELVFLDITASSE--GRDTMLDVVERVAEQV---FIPLTVGGGIRSVEDARRLLRAGADKVSINSAAV 107 (253)
T ss_pred HHHHHHHHHcCCCEEEEEeCCcccc--cCcchHHHHHHHHHhC---CCCEEeeCCCCCHHHHHHHHHcCCCEEEEChhHh
Confidence 3556667788999999987764221 1124588889988877 7999999999999999999999999999999998
Q ss_pred cCcc
Q 020013 200 ASEE 203 (332)
Q Consensus 200 ~t~E 203 (332)
..++
T Consensus 108 ~~p~ 111 (253)
T PRK02083 108 ANPE 111 (253)
T ss_pred hCcH
Confidence 8653
|
|
| >cd02932 OYE_YqiM_FMN Old yellow enzyme (OYE) YqjM-like FMN binding domain | Back alignment and domain information |
|---|
Probab=97.96 E-value=0.00014 Score=68.85 Aligned_cols=117 Identities=20% Similarity=0.262 Sum_probs=81.0
Q ss_pred HHHHhcCCcEEEEccCC---------C-------------------cHHHHHHHHhC---CCEEEEecC---------CH
Q 020013 81 KAILSEKVAVLQVSWGE---------Y-------------------SEELVLEAHSA---GVKVVPQVG---------SF 120 (332)
Q Consensus 81 ~~~~~~~~~~I~~~~g~---------~-------------------~~~~i~~~~~~---g~~v~~~v~---------s~ 120 (332)
+.+.+.|.|.|.+|.+. + ..++++.+++. +.+|...++ +.
T Consensus 161 ~~a~~aGfDgVei~~~~gyLl~qFlsp~~N~R~D~yGgsl~nr~rf~~eiv~aIR~~vG~d~~v~vri~~~~~~~~g~~~ 240 (336)
T cd02932 161 RRAVEAGFDVIEIHAAHGYLLHQFLSPLSNKRTDEYGGSLENRMRFLLEVVDAVRAVWPEDKPLFVRISATDWVEGGWDL 240 (336)
T ss_pred HHHHHcCCCEEEEccccccHHHHhcCCccCCCCcccCCCHHHHhHHHHHHHHHHHHHcCCCceEEEEEcccccCCCCCCH
Confidence 34566899999998542 1 02566666653 456665543 35
Q ss_pred HHHH----HHHHcCCCEEEEecCCCCcccCC------CCchhhhHHHHHHHhCCCCCcEEeecCcCCHHHHHHHHHcC-c
Q 020013 121 DEAR----KAVNAGVDAIIVQGREAGGHVIG------QDGLISLLPMVVDLIGDRDIPIIAAGGIVDARGYVAALSLG-A 189 (332)
Q Consensus 121 ~~a~----~a~~~g~D~ivv~G~eaGGh~~~------~~~~~~ll~~i~~~~~~~~iPviaaGGI~~~~~v~~al~~G-A 189 (332)
+++. .+.+.|+|+|-+.. |+.... ......+..++++.+ ++||++.|||.+++++.++++.| +
T Consensus 241 ~e~~~ia~~Le~~gvd~iev~~---g~~~~~~~~~~~~~~~~~~~~~ir~~~---~iPVi~~G~i~t~~~a~~~l~~g~a 314 (336)
T cd02932 241 EDSVELAKALKELGVDLIDVSS---GGNSPAQKIPVGPGYQVPFAERIRQEA---GIPVIAVGLITDPEQAEAILESGRA 314 (336)
T ss_pred HHHHHHHHHHHHcCCCEEEECC---CCCCcccccCCCccccHHHHHHHHhhC---CCCEEEeCCCCCHHHHHHHHHcCCC
Confidence 5443 44567999998742 221100 111245666777776 79999999999999999999998 9
Q ss_pred ceeeeccccccCcc
Q 020013 190 QGICLGTRFVASEE 203 (332)
Q Consensus 190 ~gV~~GT~fl~t~E 203 (332)
|.|.+|+.++..++
T Consensus 315 D~V~~gR~~i~dP~ 328 (336)
T cd02932 315 DLVALGRELLRNPY 328 (336)
T ss_pred CeehhhHHHHhCcc
Confidence 99999999998765
|
YqjM is involved in the oxidative stress response of Bacillus subtilis. Like the other OYE members, each monomer of YqjM contains FMN as a non-covalently bound cofactor and uses NADPH as a reducing agent. The YqjM enzyme exists as a homotetramer that is assembled as a dimer of catalytically dependent dimers, while other OYE members exist only as monomers or dimers. Moreover, the protein displays a shared active site architecture where an arginine finger at the COOH terminus of one monomer extends into the active site of the adjacent monomer and is directly involved in substrate recognition. Another remarkable difference in the binding of the ligand in YqjM is represented by the contribution of the NH2-terminal tyrosine instead of a COOH-terminal tyrosine in OYE and its homologs. |
| >COG0107 HisF Imidazoleglycerol-phosphate synthase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.95 E-value=0.00024 Score=62.34 Aligned_cols=183 Identities=22% Similarity=0.305 Sum_probs=119.5
Q ss_pred HHHHHHHHhCCC--ceeecC-CCCCCHHHHHHHHHHHHhhcCCcEEEEeecCCCCHHHHHHHHhcCCcEEEEcc-CCCcH
Q 020013 25 PELVAAVANAGG--LGLLRA-PDWEAPDYLRDLIRKTRSLTERPFGVGVVLAFPHNENIKAILSEKVAVLQVSW-GEYSE 100 (332)
Q Consensus 25 ~~la~avs~aGg--lG~i~~-~~~~~~e~~~~~i~~~r~~~~~p~gvnl~~~~~~~~~~~~~~~~~~~~I~~~~-g~~~~ 100 (332)
.+++..=.+.|. +=|+-. .+...-+...+.++++.+....|+.|+=-+.. .+.++.++..|+|=|+++- ....+
T Consensus 33 VelA~~Y~e~GADElvFlDItAs~~gr~~~~~vv~r~A~~vfiPltVGGGI~s--~eD~~~ll~aGADKVSINsaAv~~p 110 (256)
T COG0107 33 VELAKRYNEEGADELVFLDITASSEGRETMLDVVERVAEQVFIPLTVGGGIRS--VEDARKLLRAGADKVSINSAAVKDP 110 (256)
T ss_pred HHHHHHHHHcCCCeEEEEecccccccchhHHHHHHHHHhhceeeeEecCCcCC--HHHHHHHHHcCCCeeeeChhHhcCh
Confidence 367777767774 444321 11122244566777777666778877533322 4567788899999998862 12234
Q ss_pred HHHHHHHh-CCCE--E------------------EEe-------cCCHHHHHHHHHcCCCEEEEecCCCCcccCCCCchh
Q 020013 101 ELVLEAHS-AGVK--V------------------VPQ-------VGSFDEARKAVNAGVDAIIVQGREAGGHVIGQDGLI 152 (332)
Q Consensus 101 ~~i~~~~~-~g~~--v------------------~~~-------v~s~~~a~~a~~~g~D~ivv~G~eaGGh~~~~~~~~ 152 (332)
+++.++.+ .|.. | +.. ...++-+++.++.|+-=|++...+.-|...| ..+
T Consensus 111 ~lI~~~a~~FGsQciVvaIDakr~~~g~~~~~~v~~~gGr~~t~~d~~~Wa~~~e~~GAGEIlLtsmD~DGtk~G--yDl 188 (256)
T COG0107 111 ELITEAADRFGSQCIVVAIDAKRVPDGENGWYEVFTHGGREDTGLDAVEWAKEVEELGAGEILLTSMDRDGTKAG--YDL 188 (256)
T ss_pred HHHHHHHHHhCCceEEEEEEeeeccCCCCCcEEEEecCCCcCCCcCHHHHHHHHHHcCCceEEEeeecccccccC--cCH
Confidence 66666543 2221 1 100 1135667888999999999876655554322 358
Q ss_pred hhHHHHHHHhCCCCCcEEeecCcCCHHHHHHHHHcC-cceeeeccccccCccCCCCHHHHHHHhc
Q 020013 153 SLLPMVVDLIGDRDIPIIAAGGIVDARGYVAALSLG-AQGICLGTRFVASEESYAHPEYKRKLVE 216 (332)
Q Consensus 153 ~ll~~i~~~~~~~~iPviaaGGI~~~~~v~~al~~G-A~gV~~GT~fl~t~Es~~~~~~k~~~~~ 216 (332)
.+++.+++.+ ++|||++||.+++++..+++..| ||++...|-|=... . .-...|+.+.+
T Consensus 189 ~l~~~v~~~v---~iPvIASGGaG~~ehf~eaf~~~~adAaLAAsiFH~~~-~-~i~evK~yL~~ 248 (256)
T COG0107 189 ELTRAVREAV---NIPVIASGGAGKPEHFVEAFTEGKADAALAASIFHFGE-I-TIGEVKEYLAE 248 (256)
T ss_pred HHHHHHHHhC---CCCEEecCCCCcHHHHHHHHHhcCccHHHhhhhhhcCc-c-cHHHHHHHHHH
Confidence 8899999988 89999999999999999999888 99998888775543 2 23456666654
|
|
| >PLN02446 (5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase | Back alignment and domain information |
|---|
Probab=97.95 E-value=0.00055 Score=62.07 Aligned_cols=163 Identities=18% Similarity=0.196 Sum_probs=102.5
Q ss_pred HHHHHHHHhCCC--ceeecCCCCCCHHHHHHHHHHHHhhcCCcEEEEeecCCCCHHHHHHHHhcCCcEEEEcc-C-CC--
Q 020013 25 PELVAAVANAGG--LGLLRAPDWEAPDYLRDLIRKTRSLTERPFGVGVVLAFPHNENIKAILSEKVAVLQVSW-G-EY-- 98 (332)
Q Consensus 25 ~~la~avs~aGg--lG~i~~~~~~~~e~~~~~i~~~r~~~~~p~gvnl~~~~~~~~~~~~~~~~~~~~I~~~~-g-~~-- 98 (332)
.++|..-.+.|. +=++-..+ ..+.. .+.++++.+ ++.|+-++=-+. .+.++.+++.|++-|.++- . ..
T Consensus 46 ~~~A~~~~~~Ga~~lHvVDLdg-g~~~n-~~~i~~i~~-~~~~vqvGGGIR---~e~i~~~l~~Ga~rViigT~Av~~~~ 119 (262)
T PLN02446 46 AEFAEMYKRDGLTGGHVIMLGA-DDASL-AAALEALRA-YPGGLQVGGGVN---SENAMSYLDAGASHVIVTSYVFRDGQ 119 (262)
T ss_pred HHHHHHHHHCCCCEEEEEECCC-CCccc-HHHHHHHHh-CCCCEEEeCCcc---HHHHHHHHHcCCCEEEEchHHHhCCC
Confidence 367777777775 33332211 11211 345566655 456655542232 3778889999999988751 1 11
Q ss_pred -cHHHHHHH-HhCC--C--------------EEEE----ec--CCHHH-HHHHHHcCCCEEEEecCCCCcccCCCCchhh
Q 020013 99 -SEELVLEA-HSAG--V--------------KVVP----QV--GSFDE-ARKAVNAGVDAIIVQGREAGGHVIGQDGLIS 153 (332)
Q Consensus 99 -~~~~i~~~-~~~g--~--------------~v~~----~v--~s~~~-a~~a~~~g~D~ivv~G~eaGGh~~~~~~~~~ 153 (332)
.+++++.+ +..| . +|.. .. .++.+ +.+..+.|++.|++...+--|...| ..+.
T Consensus 120 ~~p~~v~~~~~~~G~~~IvvsiD~k~~~g~~~Va~~GW~~~t~~~~~e~~~~~~~~g~~eii~TdI~rDGtl~G--~d~e 197 (262)
T PLN02446 120 IDLERLKDLVRLVGKQRLVLDLSCRKKDGRYYVVTDRWQKFSDLAVDEETLEFLAAYCDEFLVHGVDVEGKRLG--IDEE 197 (262)
T ss_pred CCHHHHHHHHHHhCCCCEEEEEEEEecCCCEEEEECCCcccCCCCHHHHHHHHHHhCCCEEEEEEEcCCCcccC--CCHH
Confidence 14455444 3322 1 1110 00 13444 5778888999999976544443222 3478
Q ss_pred hHHHHHHHhCCCCCcEEeecCcCCHHHHHHHHHc--Ccceeeecccc
Q 020013 154 LLPMVVDLIGDRDIPIIAAGGIVDARGYVAALSL--GAQGICLGTRF 198 (332)
Q Consensus 154 ll~~i~~~~~~~~iPviaaGGI~~~~~v~~al~~--GA~gV~~GT~f 198 (332)
++.++.+.. ++|||++|||++.+|+.+...+ |..+|++|.++
T Consensus 198 l~~~l~~~~---~ipVIASGGv~sleDi~~L~~~g~g~~gvIvGkAl 241 (262)
T PLN02446 198 LVALLGEHS---PIPVTYAGGVRSLDDLERVKVAGGGRVDVTVGSAL 241 (262)
T ss_pred HHHHHHhhC---CCCEEEECCCCCHHHHHHHHHcCCCCEEEEEEeeH
Confidence 888888876 7999999999999999999988 57999999998
|
|
| >PRK13586 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional | Back alignment and domain information |
|---|
Probab=97.93 E-value=0.00054 Score=61.43 Aligned_cols=139 Identities=19% Similarity=0.084 Sum_probs=87.0
Q ss_pred HHHHHHHhhcCCcEEEEeecCCCCHHHHHHHHhcCCcEEEEccC-CCcHHHHHHH-HhCC-CEEE--Eec----------
Q 020013 53 DLIRKTRSLTERPFGVGVVLAFPHNENIKAILSEKVAVLQVSWG-EYSEELVLEA-HSAG-VKVV--PQV---------- 117 (332)
Q Consensus 53 ~~i~~~r~~~~~p~gvnl~~~~~~~~~~~~~~~~~~~~I~~~~g-~~~~~~i~~~-~~~g-~~v~--~~v---------- 117 (332)
+.++++.+....|+-++=-+. ..+.++.+++.|++-|.++.. ...+++++.+ +..| -.++ ..+
T Consensus 63 ~~i~~i~~~~~~~v~vGGGIr--s~e~~~~~l~~Ga~kvvigt~a~~~p~~~~~~~~~~g~~~ivvslD~~~~~~v~~~g 140 (232)
T PRK13586 63 MYIKEISKIGFDWIQVGGGIR--DIEKAKRLLSLDVNALVFSTIVFTNFNLFHDIVREIGSNRVLVSIDYDNTKRVLIRG 140 (232)
T ss_pred HHHHHHHhhCCCCEEEeCCcC--CHHHHHHHHHCCCCEEEECchhhCCHHHHHHHHHHhCCCCEEEEEEcCCCCEEEccC
Confidence 556666542223654432222 256778888899998877521 1233455543 2222 1111 111
Q ss_pred -----CCH-HHHHHHHHcCCCEEEEecCCCCcccCCCCchhhhHHHHHHHhCCCCCcEEeecCcCCHHHHHHHHHcCcce
Q 020013 118 -----GSF-DEARKAVNAGVDAIIVQGREAGGHVIGQDGLISLLPMVVDLIGDRDIPIIAAGGIVDARGYVAALSLGAQG 191 (332)
Q Consensus 118 -----~s~-~~a~~a~~~g~D~ivv~G~eaGGh~~~~~~~~~ll~~i~~~~~~~~iPviaaGGI~~~~~v~~al~~GA~g 191 (332)
.++ +.++++.+.|+..+++..-+.-|...| ..++++.++.+. ..|++++|||++.+|+.++..+|++|
T Consensus 141 w~~~~~~~~e~~~~l~~~g~~~ii~tdI~~dGt~~G--~d~el~~~~~~~----~~~viasGGv~s~~Dl~~l~~~G~~g 214 (232)
T PRK13586 141 WKEKSMEVIDGIKKVNELELLGIIFTYISNEGTTKG--IDYNVKDYARLI----RGLKEYAGGVSSDADLEYLKNVGFDY 214 (232)
T ss_pred CeeCCCCHHHHHHHHHhcCCCEEEEecccccccCcC--cCHHHHHHHHhC----CCCEEEECCCCCHHHHHHHHHCCCCE
Confidence 123 445667788999999876554443222 346677777653 34699999999999999999999999
Q ss_pred eeeccccc
Q 020013 192 ICLGTRFV 199 (332)
Q Consensus 192 V~~GT~fl 199 (332)
|.+|+++.
T Consensus 215 vivg~Aly 222 (232)
T PRK13586 215 IIVGMAFY 222 (232)
T ss_pred EEEehhhh
Confidence 99999975
|
|
| >cd02931 ER_like_FMN Enoate reductase (ER)-like FMN-binding domain | Back alignment and domain information |
|---|
Probab=97.90 E-value=0.0006 Score=65.75 Aligned_cols=77 Identities=25% Similarity=0.374 Sum_probs=55.5
Q ss_pred HHHHHcCCCEEEEecCCCCc-c---c--CCCCc-hhhhHHHHHHHhCCCCCcEEeecCcCCHHHHHHHHHcC-cceeeec
Q 020013 124 RKAVNAGVDAIIVQGREAGG-H---V--IGQDG-LISLLPMVVDLIGDRDIPIIAAGGIVDARGYVAALSLG-AQGICLG 195 (332)
Q Consensus 124 ~~a~~~g~D~ivv~G~eaGG-h---~--~~~~~-~~~ll~~i~~~~~~~~iPviaaGGI~~~~~v~~al~~G-A~gV~~G 195 (332)
+.+.+.|+|+|-+.+..... + . ..... .+.+...+++.+ ++||++.|||.+++++.++++-| ||.|.+|
T Consensus 259 ~~l~~~gvD~l~vs~g~~~~~~~~~~~~~~~~~~~~~~~~~ik~~~---~~pvi~~G~i~~~~~~~~~l~~g~~D~V~~g 335 (382)
T cd02931 259 KILEEAGYDALDVDAGSYDAWYWNHPPMYQKKGMYLPYCKALKEVV---DVPVIMAGRMEDPELASEAINEGIADMISLG 335 (382)
T ss_pred HHHHHhCCCEEEeCCCCCcccccccCCccCCcchhHHHHHHHHHHC---CCCEEEeCCCCCHHHHHHHHHcCCCCeeeec
Confidence 45567899999986432110 0 0 00011 134566777776 79999999999999999999976 9999999
Q ss_pred cccccCcc
Q 020013 196 TRFVASEE 203 (332)
Q Consensus 196 T~fl~t~E 203 (332)
..++..++
T Consensus 336 R~~ladP~ 343 (382)
T cd02931 336 RPLLADPD 343 (382)
T ss_pred hHhHhCcc
Confidence 99997754
|
Enoate reductase catalyzes the NADH-dependent reduction of carbon-carbon double bonds of several molecules, including nonactivated 2-enoates, alpha,beta-unsaturated aldehydes, cyclic ketones, and methylketones. ERs are similar to 2,4-dienoyl-CoA reductase from E. coli and to the old yellow enzyme from Saccharomyces cerevisiae. |
| >PF09370 TIM-br_sig_trns: TIM-barrel signal transduction protein; InterPro: IPR009215 Members of this family are predicted to have a TIM barrel fold, based on PSI-BLAST analysis (iteration 4) and on SCOP prediction (using SMART) | Back alignment and domain information |
|---|
Probab=97.89 E-value=0.00016 Score=64.96 Aligned_cols=189 Identities=21% Similarity=0.283 Sum_probs=105.3
Q ss_pred hhcCCccceecCCCCCCCCcHHHHHHHHhCCCceeecCCC-----------------CCCH-HHHHHHHHHHHhh-cCCc
Q 020013 5 GMLGFEYGIVQAPLGPDISGPELVAAVANAGGLGLLRAPD-----------------WEAP-DYLRDLIRKTRSL-TERP 65 (332)
Q Consensus 5 ~~l~~~~Pii~apM~~g~s~~~la~avs~aGglG~i~~~~-----------------~~~~-e~~~~~i~~~r~~-~~~p 65 (332)
+...-..|||.++-+ + -+.+..++.||..+|-..+ |.+. +...+.-+++-.. .+.|
T Consensus 9 ~~i~~~~pIig~gaG----t-GlsAk~ae~gGaDlI~~ynsGrfR~~G~~SlagllpygnaN~iv~em~~eiLp~v~~tP 83 (268)
T PF09370_consen 9 AQIKAGKPIIGAGAG----T-GLSAKCAEKGGADLILIYNSGRFRMAGRGSLAGLLPYGNANEIVMEMAREILPVVKDTP 83 (268)
T ss_dssp HHHHTT--EEEEEES----S-HHHHHHHHHTT-SEEEE-HHHHHHHTT--GGGGGBTEEEHHHHHHHHHHHHGGG-SSS-
T ss_pred HHHhCCCceEEEeec----c-chhhHHHHhcCCCEEEEecchhHhhCCCcchhhhhcccCHhHHHHHHHHhhhhhccCCC
Confidence 344456799955432 2 4566677788888874311 1111 2222333333222 3578
Q ss_pred EEEEeecCCCC---HHHHHHHHhcCCcEEEEc--c--------------CC-Cc--HHHHHHHHhCCCEEEEecCCHHHH
Q 020013 66 FGVGVVLAFPH---NENIKAILSEKVAVLQVS--W--------------GE-YS--EELVLEAHSAGVKVVPQVGSFDEA 123 (332)
Q Consensus 66 ~gvnl~~~~~~---~~~~~~~~~~~~~~I~~~--~--------------g~-~~--~~~i~~~~~~g~~v~~~v~s~~~a 123 (332)
+-.++...+|. ..+++.+.+.|...|+-. . |. +. -++++..++.|+..++-|-++++|
T Consensus 84 ViaGv~atDP~~~~~~fl~~lk~~Gf~GV~NfPTvgliDG~fR~~LEe~Gmgy~~EVemi~~A~~~gl~T~~yvf~~e~A 163 (268)
T PF09370_consen 84 VIAGVCATDPFRDMDRFLDELKELGFSGVQNFPTVGLIDGQFRQNLEETGMGYDREVEMIRKAHEKGLFTTAYVFNEEQA 163 (268)
T ss_dssp EEEEE-TT-TT--HHHHHHHHHHHT-SEEEE-S-GGG--HHHHHHHHHTT--HHHHHHHHHHHHHTT-EE--EE-SHHHH
T ss_pred EEEEecCcCCCCcHHHHHHHHHHhCCceEEECCcceeeccHHHHHHHhcCCCHHHHHHHHHHHHHCCCeeeeeecCHHHH
Confidence 77777777664 567888888898888621 0 10 00 145667788899999999999999
Q ss_pred HHHHHcCCCEEEEe-cCCCCcccCCC-C----chhhhHHHHHHHhCC--CC-CcEEeecCcCCHHHHHHHHH--cCccee
Q 020013 124 RKAVNAGVDAIIVQ-GREAGGHVIGQ-D----GLISLLPMVVDLIGD--RD-IPIIAAGGIVDARGYVAALS--LGAQGI 192 (332)
Q Consensus 124 ~~a~~~g~D~ivv~-G~eaGGh~~~~-~----~~~~ll~~i~~~~~~--~~-iPviaaGGI~~~~~v~~al~--~GA~gV 192 (332)
+...++|+|.|+++ |...||..+.. . ....++.++.++... .+ +-++-.|-|.+|+|+...+. -|++|.
T Consensus 164 ~~M~~AGaDiiv~H~GlT~gG~~Ga~~~~sl~~a~~~~~~i~~aa~~v~~dii~l~hGGPI~~p~D~~~~l~~t~~~~Gf 243 (268)
T PF09370_consen 164 RAMAEAGADIIVAHMGLTTGGSIGAKTALSLEEAAERIQEIFDAARAVNPDIIVLCHGGPIATPEDAQYVLRNTKGIHGF 243 (268)
T ss_dssp HHHHHHT-SEEEEE-SS----------S--HHHHHHHHHHHHHHHHCC-TT-EEEEECTTB-SHHHHHHHHHH-TTEEEE
T ss_pred HHHHHcCCCEEEecCCccCCCCcCccccCCHHHHHHHHHHHHHHHHHhCCCeEEEEeCCCCCCHHHHHHHHhcCCCCCEE
Confidence 99999999999995 67777765221 1 124455666665432 13 34555666999999999987 468999
Q ss_pred eecccc
Q 020013 193 CLGTRF 198 (332)
Q Consensus 193 ~~GT~f 198 (332)
+-||.+
T Consensus 244 ~G~Ss~ 249 (268)
T PF09370_consen 244 IGASSM 249 (268)
T ss_dssp EESTTT
T ss_pred ecccch
Confidence 988875
|
Interestingly, this novel domain also exists as an N-terminal domain of sigma54-dependent transcriptional activators (enhancer-binding proteins). Because sigma54 dependent activators typically have a three-domain structure: the variable N-terminal regulatory (activation) domain involved in signal recognition/receiving, the central AAA-type ATPase domain, and the DNA-binding domain (see PIRSF003187 from PIRSF, PIRSF005263 from PIRSF, PIRSF003184 from PIRSF, PIRSF005263 from PIRSF, IPR014443 from INTERPRO for details), the proteins of the current entry may be predicted to play a role in signal recognition/receiving and signal transduction.; PDB: 2P10_C. |
| >TIGR00734 hisAF_rel hisA/hisF family protein | Back alignment and domain information |
|---|
Probab=97.88 E-value=6.1e-05 Score=67.06 Aligned_cols=69 Identities=17% Similarity=0.281 Sum_probs=53.3
Q ss_pred HHHcCCCEEEEecCCCCcccCCCCchhhhHHHHHHHhCCCCCcEEeecCcCCHHHHHHHHHcCcceeeecccccc
Q 020013 126 AVNAGVDAIIVQGREAGGHVIGQDGLISLLPMVVDLIGDRDIPIIAAGGIVDARGYVAALSLGAQGICLGTRFVA 200 (332)
Q Consensus 126 a~~~g~D~ivv~G~eaGGh~~~~~~~~~ll~~i~~~~~~~~iPviaaGGI~~~~~v~~al~~GA~gV~~GT~fl~ 200 (332)
....|+ .+++.--..-|.. .-..++++.++.+.. ++||+++|||++.+++.++..+||++|.+||+|..
T Consensus 150 ~~~~g~-~ii~tdI~~dGt~--~G~d~eli~~i~~~~---~~pvia~GGi~s~ed~~~l~~~Ga~~vivgsal~~ 218 (221)
T TIGR00734 150 LNSFDY-GLIVLDIHSVGTM--KGPNLELLTKTLELS---EHPVMLGGGISGVEDLELLKEMGVSAVLVATAVHK 218 (221)
T ss_pred HHhcCC-EEEEEECCccccC--CCCCHHHHHHHHhhC---CCCEEEeCCCCCHHHHHHHHHCCCCEEEEhHHhhC
Confidence 345677 6666544333332 124588889988876 79999999999999999999999999999999853
|
This alignment models a family of proteins found so far in three archaeal species: Methanobacterium thermoautotrophicum, Methanococcus jannaschii, and Archaeoglobus fulgidus. This protein is homologous to phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase (HisA) and, with lower similarity, to the cyclase HisF, both of which are enzymes of histidine biosynthesis. Each species with this protein also encodes HisA. The function of this protein is unknown. |
| >TIGR01304 IMP_DH_rel_2 IMP dehydrogenase family protein | Back alignment and domain information |
|---|
Probab=97.86 E-value=0.00014 Score=69.37 Aligned_cols=93 Identities=29% Similarity=0.422 Sum_probs=64.7
Q ss_pred HHHHHHHhCCCEEEEecC---CHHHHHHHHHcCCCEEEEecCC-CCcccCCCCchhhhHHHHHHHhCCCCCcEEeecCcC
Q 020013 101 ELVLEAHSAGVKVVPQVG---SFDEARKAVNAGVDAIIVQGRE-AGGHVIGQDGLISLLPMVVDLIGDRDIPIIAAGGIV 176 (332)
Q Consensus 101 ~~i~~~~~~g~~v~~~v~---s~~~a~~a~~~g~D~ivv~G~e-aGGh~~~~~~~~~ll~~i~~~~~~~~iPviaaGGI~ 176 (332)
+.++.+++.++.+-..++ ..+.++.++++|+|.|+++|+. .-.|..+. ..+..+.++.+.+ ++|||+ |+|.
T Consensus 123 ~ii~~vr~a~VtvkiRl~~~~~~e~a~~l~eAGad~I~ihgrt~~q~~~sg~-~~p~~l~~~i~~~---~IPVI~-G~V~ 197 (369)
T TIGR01304 123 ERIAEVRDSGVITAVRVSPQNAREIAPIVVKAGADLLVIQGTLVSAEHVSTS-GEPLNLKEFIGEL---DVPVIA-GGVN 197 (369)
T ss_pred HHHHHHHhcceEEEEecCCcCHHHHHHHHHHCCCCEEEEeccchhhhccCCC-CCHHHHHHHHHHC---CCCEEE-eCCC
Confidence 456777777644433332 3456678889999999998863 11221111 2244566666665 799997 9999
Q ss_pred CHHHHHHHHHcCcceeeecccc
Q 020013 177 DARGYVAALSLGAQGICLGTRF 198 (332)
Q Consensus 177 ~~~~v~~al~~GA~gV~~GT~f 198 (332)
+.+++.+++.+|||+|++|+.-
T Consensus 198 t~e~A~~~~~aGaDgV~~G~gg 219 (369)
T TIGR01304 198 DYTTALHLMRTGAAGVIVGPGG 219 (369)
T ss_pred CHHHHHHHHHcCCCEEEECCCC
Confidence 9999999999999999987543
|
This model represents a family of proteins, often annotated as a putative IMP dehydrogenase, related to IMP dehydrogenase and GMP reductase. Most species with a member of this family belong to the high GC Gram-positive bacteria, and these also have the IMP dehydrogenase described by TIGRFAMs equivalog model TIGR01302. |
| >cd04733 OYE_like_2_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 2 | Back alignment and domain information |
|---|
Probab=97.83 E-value=0.00042 Score=65.77 Aligned_cols=120 Identities=18% Similarity=0.230 Sum_probs=81.0
Q ss_pred HHHHhcCCcEEEEccCC---------C-------------------cHHHHHHHHhC---CCEEEEecC---------CH
Q 020013 81 KAILSEKVAVLQVSWGE---------Y-------------------SEELVLEAHSA---GVKVVPQVG---------SF 120 (332)
Q Consensus 81 ~~~~~~~~~~I~~~~g~---------~-------------------~~~~i~~~~~~---g~~v~~~v~---------s~ 120 (332)
+.+.++|.|.|.+|.+. + +.++++.+++. +++|...++ +.
T Consensus 156 ~ra~~aGfDgVeih~a~gyLl~qFlsp~~N~R~D~yGGslenR~rf~~EiI~aIR~avG~d~~v~vris~~~~~~~g~~~ 235 (338)
T cd04733 156 RLAQEAGFDGVQIHAAHGYLLSQFLSPLTNKRTDEYGGSLENRARLLLEIYDAIRAAVGPGFPVGIKLNSADFQRGGFTE 235 (338)
T ss_pred HHHHHcCCCEEEEchhhhhHHHHhcCCcCCCCCccCCCCHHHHHHHHHHHHHHHHHHcCCCCeEEEEEcHHHcCCCCCCH
Confidence 34566899999998542 1 12455666653 466776553 44
Q ss_pred HHH----HHHHHcCCCEEEEecCCCC-----cccCCC-----CchhhhHHHHHHHhCCCCCcEEeecCcCCHHHHHHHHH
Q 020013 121 DEA----RKAVNAGVDAIIVQGREAG-----GHVIGQ-----DGLISLLPMVVDLIGDRDIPIIAAGGIVDARGYVAALS 186 (332)
Q Consensus 121 ~~a----~~a~~~g~D~ivv~G~eaG-----Gh~~~~-----~~~~~ll~~i~~~~~~~~iPviaaGGI~~~~~v~~al~ 186 (332)
+++ +.+.+.|+|+|-+.+.... ++.... ...+.+..++++.+ ++||++.|+|.+++++.++++
T Consensus 236 eea~~ia~~Le~~Gvd~iev~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ik~~v---~iPVi~~G~i~t~~~a~~~l~ 312 (338)
T cd04733 236 EDALEVVEALEEAGVDLVELSGGTYESPAMAGAKKESTIAREAYFLEFAEKIRKVT---KTPLMVTGGFRTRAAMEQALA 312 (338)
T ss_pred HHHHHHHHHHHHcCCCEEEecCCCCCCccccccccCCccccchhhHHHHHHHHHHc---CCCEEEeCCCCCHHHHHHHHH
Confidence 444 4456789999988542110 000000 01135566777777 799999999999999999999
Q ss_pred cC-cceeeeccccccCcc
Q 020013 187 LG-AQGICLGTRFVASEE 203 (332)
Q Consensus 187 ~G-A~gV~~GT~fl~t~E 203 (332)
.| ||.|.+|..+++.++
T Consensus 313 ~g~aD~V~lgR~~iadP~ 330 (338)
T cd04733 313 SGAVDGIGLARPLALEPD 330 (338)
T ss_pred cCCCCeeeeChHhhhCcc
Confidence 87 899999999998765
|
Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase. |
| >PRK08649 inosine 5-monophosphate dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=97.83 E-value=0.00013 Score=69.67 Aligned_cols=92 Identities=30% Similarity=0.459 Sum_probs=62.6
Q ss_pred HHHHHHHhCCCEEEEecC---CHHHHHHHHHcCCCEEEEecCC-CCcccCCCCchhhhHHHHHHHhCCCCCcEEeecCcC
Q 020013 101 ELVLEAHSAGVKVVPQVG---SFDEARKAVNAGVDAIIVQGRE-AGGHVIGQDGLISLLPMVVDLIGDRDIPIIAAGGIV 176 (332)
Q Consensus 101 ~~i~~~~~~g~~v~~~v~---s~~~a~~a~~~g~D~ivv~G~e-aGGh~~~~~~~~~ll~~i~~~~~~~~iPviaaGGI~ 176 (332)
++++.+++.++.+...++ ..+.++.++++|+|+|+++|+. .-.|. +....+..+.++.+.. ++|||+ |+|.
T Consensus 122 ~iv~~~~~~~V~v~vr~~~~~~~e~a~~l~eaGvd~I~vhgrt~~~~h~-~~~~~~~~i~~~ik~~---~ipVIa-G~V~ 196 (368)
T PRK08649 122 ERIAEIRDAGVIVAVSLSPQRAQELAPTVVEAGVDLFVIQGTVVSAEHV-SKEGEPLNLKEFIYEL---DVPVIV-GGCV 196 (368)
T ss_pred HHHHHHHhCeEEEEEecCCcCHHHHHHHHHHCCCCEEEEeccchhhhcc-CCcCCHHHHHHHHHHC---CCCEEE-eCCC
Confidence 345556666655544332 3466778889999999998853 22343 1111233344444444 799998 9999
Q ss_pred CHHHHHHHHHcCcceeeeccc
Q 020013 177 DARGYVAALSLGAQGICLGTR 197 (332)
Q Consensus 177 ~~~~v~~al~~GA~gV~~GT~ 197 (332)
+.+++.+++.+|||+|.+|..
T Consensus 197 t~e~A~~l~~aGAD~V~VG~G 217 (368)
T PRK08649 197 TYTTALHLMRTGAAGVLVGIG 217 (368)
T ss_pred CHHHHHHHHHcCCCEEEECCC
Confidence 999999999999999999843
|
|
| >PLN02617 imidazole glycerol phosphate synthase hisHF | Back alignment and domain information |
|---|
Probab=97.82 E-value=0.00089 Score=67.08 Aligned_cols=188 Identities=19% Similarity=0.254 Sum_probs=117.1
Q ss_pred CCcH-HHHHHHHhCCC--ceeecCCCC-CC---HHHHHHHHHHHHhhcCCcEEEEeecCCC---------CHHHHHHHHh
Q 020013 22 ISGP-ELVAAVANAGG--LGLLRAPDW-EA---PDYLRDLIRKTRSLTERPFGVGVVLAFP---------HNENIKAILS 85 (332)
Q Consensus 22 ~s~~-~la~avs~aGg--lG~i~~~~~-~~---~e~~~~~i~~~r~~~~~p~gvnl~~~~~---------~~~~~~~~~~ 85 (332)
+.+| ++|..-.+.|. +=++-.-.. .+ -+...+.++++.+....|+-|+=-+... .-+.++.+++
T Consensus 266 ~gdPve~a~~y~~~Gadel~~~Di~~~~~~~~~~~~~~~~i~~i~~~~~ip~~vGGGIr~~~d~~~~~~~~~e~~~~~l~ 345 (538)
T PLN02617 266 LGKPVELAGQYYKDGADEVAFLNITGFRDFPLGDLPMLEVLRRASENVFVPLTVGGGIRDFTDANGRYYSSLEVASEYFR 345 (538)
T ss_pred CCCHHHHHHHHHHcCCCEEEEEECCCCcCCcccchhHHHHHHHHHhhCCCCEEEcCCccccccccccccchHHHHHHHHH
Confidence 3455 56666656664 444432111 11 1224566777766666787664322221 1266888999
Q ss_pred cCCcEEEEccC--CCc-----------HHHHHHHH-hCCCE-EEEec---------------------------------
Q 020013 86 EKVAVLQVSWG--EYS-----------EELVLEAH-SAGVK-VVPQV--------------------------------- 117 (332)
Q Consensus 86 ~~~~~I~~~~g--~~~-----------~~~i~~~~-~~g~~-v~~~v--------------------------------- 117 (332)
.|+|-|.++-. ..| +++++.+- ..|-. |+..+
T Consensus 346 ~GadkV~i~s~Av~~~~~~~~~~~~~~p~~i~~~~~~fg~q~ivvsiD~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 425 (538)
T PLN02617 346 SGADKISIGSDAVYAAEEYIASGVKTGKTSIEQISRVYGNQAVVVSIDPRRVYVKDPSDVPFKTVKVTNPGPNGEEYAWY 425 (538)
T ss_pred cCCCEEEEChHHHhChhhhhccccccCHHHHHHHHHHcCCceEEEEEecCcCcccCccccccccccccccCcCcccceEE
Confidence 99999988621 011 34555443 23322 22111
Q ss_pred -------------CCHHHHHHHHHcCCCEEEEecCCCCcccCCCCchhhhHHHHHHHhCCCCCcEEeecCcCCHHHHHHH
Q 020013 118 -------------GSFDEARKAVNAGVDAIIVQGREAGGHVIGQDGLISLLPMVVDLIGDRDIPIIAAGGIVDARGYVAA 184 (332)
Q Consensus 118 -------------~s~~~a~~a~~~g~D~ivv~G~eaGGh~~~~~~~~~ll~~i~~~~~~~~iPviaaGGI~~~~~v~~a 184 (332)
...+-++++++.|+.-|++...+.-|...| ..+.++..+.+.+ ++|||++||+++.+++.++
T Consensus 426 ~v~~~gg~~~~~~~~~~~~~~~~~~Gageil~t~id~DGt~~G--~d~~l~~~v~~~~---~ipviasGG~g~~~d~~~~ 500 (538)
T PLN02617 426 QCTVKGGREGRPIGAYELAKAVEELGAGEILLNCIDCDGQGKG--FDIELVKLVSDAV---TIPVIASSGAGTPEHFSDV 500 (538)
T ss_pred EEEEecCcccCCCCHHHHHHHHHhcCCCEEEEeeccccccccC--cCHHHHHHHHhhC---CCCEEEECCCCCHHHHHHH
Confidence 113456778889999999866544443212 3478888888887 8999999999999999999
Q ss_pred HH-cCcceeeeccccccCccCCCCHHHHHHHhc
Q 020013 185 LS-LGAQGICLGTRFVASEESYAHPEYKRKLVE 216 (332)
Q Consensus 185 l~-~GA~gV~~GT~fl~t~Es~~~~~~k~~~~~ 216 (332)
+. .||+++..++-|-...- .-...|+.+.+
T Consensus 501 ~~~~~~~a~~aa~~fh~~~~--~~~~~k~~l~~ 531 (538)
T PLN02617 501 FSKTNASAALAAGIFHRKEV--PISSVKEHLLE 531 (538)
T ss_pred HhcCCccEEEEEeeeccCCC--CHHHHHHHHHH
Confidence 97 67999999988776633 23556777665
|
|
| >PF01729 QRPTase_C: Quinolinate phosphoribosyl transferase, C-terminal domain; InterPro: IPR002638 Quinolinate phosphoribosyl transferase (QPRTase) or nicotinate-nucleotide pyrophosphorylase 2 | Back alignment and domain information |
|---|
Probab=97.81 E-value=0.00014 Score=61.94 Aligned_cols=90 Identities=27% Similarity=0.328 Sum_probs=65.8
Q ss_pred cHHHHHHHHhC---CCEEEEecCCHHHHHHHHHcCCCEEEEecCCCCcccCCCCchhhhHHHHHH---HhCCCCCcEEee
Q 020013 99 SEELVLEAHSA---GVKVVPQVGSFDEARKAVNAGVDAIIVQGREAGGHVIGQDGLISLLPMVVD---LIGDRDIPIIAA 172 (332)
Q Consensus 99 ~~~~i~~~~~~---g~~v~~~v~s~~~a~~a~~~g~D~ivv~G~eaGGh~~~~~~~~~ll~~i~~---~~~~~~iPviaa 172 (332)
..+.++.+++. ..++...+.+.++++.+.++|+|.|.++++ . ...++++++ ... .++-+.++
T Consensus 66 i~~av~~~~~~~~~~~~I~VEv~~~ee~~ea~~~g~d~I~lD~~-------~----~~~~~~~v~~l~~~~-~~v~ie~S 133 (169)
T PF01729_consen 66 IEEAVKAARQAAPEKKKIEVEVENLEEAEEALEAGADIIMLDNM-------S----PEDLKEAVEELRELN-PRVKIEAS 133 (169)
T ss_dssp HHHHHHHHHHHSTTTSEEEEEESSHHHHHHHHHTT-SEEEEES--------C----HHHHHHHHHHHHHHT-TTSEEEEE
T ss_pred HHHHHHHHHHhCCCCceEEEEcCCHHHHHHHHHhCCCEEEecCc-------C----HHHHHHHHHHHhhcC-CcEEEEEE
Confidence 45566666652 345889999999999999999999999765 1 233344433 222 25889999
Q ss_pred cCcCCHHHHHHHHHcCcceeeeccccccC
Q 020013 173 GGIVDARGYVAALSLGAQGICLGTRFVAS 201 (332)
Q Consensus 173 GGI~~~~~v~~al~~GA~gV~~GT~fl~t 201 (332)
||| |.+++.++...|+|.+.+|+....+
T Consensus 134 GGI-~~~ni~~ya~~gvD~isvg~~~~~a 161 (169)
T PF01729_consen 134 GGI-TLENIAEYAKTGVDVISVGSLTHSA 161 (169)
T ss_dssp SSS-STTTHHHHHHTT-SEEEECHHHHSB
T ss_pred CCC-CHHHHHHHHhcCCCEEEcChhhcCC
Confidence 999 9999999999999999999875443
|
4.2.19 from EC is involved in the de novo synthesis of NAD in both prokaryotes and eukaryotes. It catalyses the reaction of quinolinic acid with 5-phosphoribosyl-1-pyrophosphate (PRPP) in the presence of Mg2+ to give rise to nicotinic acid mononucleotide (NaMN), pyrophosphate and carbon dioxide [, ]. Unlike IPR004393 from INTERPRO, this domain also includes the molybdenum transport system protein ModD.; GO: 0004514 nicotinate-nucleotide diphosphorylase (carboxylating) activity, 0009435 NAD biosynthetic process; PDB: 3C2O_A 3C2F_A 3C2E_A 3C2R_A 3C2V_A 1QPN_E 1QPO_A 1QPQ_F 1QPR_E 2I14_D .... |
| >cd04735 OYE_like_4_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 4 | Back alignment and domain information |
|---|
Probab=97.81 E-value=0.00032 Score=66.94 Aligned_cols=79 Identities=22% Similarity=0.378 Sum_probs=55.6
Q ss_pred HHHHHcCCCEEEEecCCCCcccC-CCCchhhhHHHHHHHhCCCCCcEEeecCcCCHHHHHHHHHcCcceeeeccccccCc
Q 020013 124 RKAVNAGVDAIIVQGREAGGHVI-GQDGLISLLPMVVDLIGDRDIPIIAAGGIVDARGYVAALSLGAQGICLGTRFVASE 202 (332)
Q Consensus 124 ~~a~~~g~D~ivv~G~eaGGh~~-~~~~~~~ll~~i~~~~~~~~iPviaaGGI~~~~~v~~al~~GA~gV~~GT~fl~t~ 202 (332)
+.+.+.|+|+|-+.+........ ........+..+++.+. .++||++.|||.+++++.++++.|||.|.+|+.++..+
T Consensus 242 ~~L~~~GvD~I~Vs~g~~~~~~~~~~~~~~~~~~~ik~~~~-~~iPVi~~Ggi~t~e~ae~~l~~gaD~V~~gR~liadP 320 (353)
T cd04735 242 DKLADKGLDYLHISLWDFDRKSRRGRDDNQTIMELVKERIA-GRLPLIAVGSINTPDDALEALETGADLVAIGRGLLVDP 320 (353)
T ss_pred HHHHHcCCCEEEeccCccccccccCCcchHHHHHHHHHHhC-CCCCEEEECCCCCHHHHHHHHHcCCChHHHhHHHHhCc
Confidence 45667899999986431111100 11112445555666543 26899999999999999999999999999999999774
Q ss_pred c
Q 020013 203 E 203 (332)
Q Consensus 203 E 203 (332)
+
T Consensus 321 d 321 (353)
T cd04735 321 D 321 (353)
T ss_pred c
Confidence 3
|
Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase. |
| >cd02933 OYE_like_FMN Old yellow enzyme (OYE)-like FMN binding domain | Back alignment and domain information |
|---|
Probab=97.80 E-value=0.00043 Score=65.65 Aligned_cols=117 Identities=21% Similarity=0.272 Sum_probs=78.4
Q ss_pred HHHHhcCCcEEEEccCC---------C-------------------cHHHHHHHHhC-CC-EEEEecC------------
Q 020013 81 KAILSEKVAVLQVSWGE---------Y-------------------SEELVLEAHSA-GV-KVVPQVG------------ 118 (332)
Q Consensus 81 ~~~~~~~~~~I~~~~g~---------~-------------------~~~~i~~~~~~-g~-~v~~~v~------------ 118 (332)
..+.++|.|.|++|++. + ..++++.+++. |. .|...++
T Consensus 159 ~~a~~aGfDgVeih~ahGyLl~qFlSp~~N~R~D~yGGslenR~rf~~eii~air~~vg~d~v~vRis~~~~~~~~~~~~ 238 (338)
T cd02933 159 RNAIEAGFDGVEIHGANGYLIDQFLRDGSNKRTDEYGGSIENRARFLLEVVDAVAEAIGADRVGIRLSPFGTFNDMGDSD 238 (338)
T ss_pred HHHHHcCCCEEEEccccchhHHHhcCCccCCCCCcCCCcHHHhhhHHHHHHHHHHHHhCCCceEEEECccccCCCCCCCC
Confidence 45666899999998543 1 12455666653 33 3444332
Q ss_pred CHHH----HHHHHHcCCCEEEEecCCCCcccCCCCchhhhHHHHHHHhCCCCCcEEeecCcCCHHHHHHHHHcC-cceee
Q 020013 119 SFDE----ARKAVNAGVDAIIVQGREAGGHVIGQDGLISLLPMVVDLIGDRDIPIIAAGGIVDARGYVAALSLG-AQGIC 193 (332)
Q Consensus 119 s~~~----a~~a~~~g~D~ivv~G~eaGGh~~~~~~~~~ll~~i~~~~~~~~iPviaaGGI~~~~~v~~al~~G-A~gV~ 193 (332)
+.++ ++.+.+.|+|+|-+........ .....+.+..++++.+ ++||++.|||. ++++.++++.| ||.|.
T Consensus 239 ~~ee~~~~~~~l~~~g~d~i~vs~g~~~~~--~~~~~~~~~~~ik~~~---~ipvi~~G~i~-~~~a~~~l~~g~~D~V~ 312 (338)
T cd02933 239 PEATFSYLAKELNKRGLAYLHLVEPRVAGN--PEDQPPDFLDFLRKAF---KGPLIAAGGYD-AESAEAALADGKADLVA 312 (338)
T ss_pred CHHHHHHHHHHHHHcCCcEEEEecCCCCCc--ccccchHHHHHHHHHc---CCCEEEECCCC-HHHHHHHHHcCCCCEEE
Confidence 3333 3455678999998843111110 1123466777888877 79999999995 99999999976 99999
Q ss_pred eccccccCcc
Q 020013 194 LGTRFVASEE 203 (332)
Q Consensus 194 ~GT~fl~t~E 203 (332)
+|..+++.++
T Consensus 313 ~gR~~ladP~ 322 (338)
T cd02933 313 FGRPFIANPD 322 (338)
T ss_pred eCHhhhhCcC
Confidence 9999998754
|
OYE was the first flavin-dependent enzyme identified, however its true physiological role remains elusive to this day. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Members of OYE family include 12-oxophytodienoate reductase, pentaerythritol tetranitrate reductase, morphinone reductase, and related enzymes. |
| >PRK00748 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Validated | Back alignment and domain information |
|---|
Probab=97.79 E-value=9.9e-05 Score=66.09 Aligned_cols=76 Identities=24% Similarity=0.368 Sum_probs=59.7
Q ss_pred HHHHHHHHcCCCEEEEecCCC--CcccCCCCchhhhHHHHHHHhCCCCCcEEeecCcCCHHHHHHHHHcCcceeeecccc
Q 020013 121 DEARKAVNAGVDAIIVQGREA--GGHVIGQDGLISLLPMVVDLIGDRDIPIIAAGGIVDARGYVAALSLGAQGICLGTRF 198 (332)
Q Consensus 121 ~~a~~a~~~g~D~ivv~G~ea--GGh~~~~~~~~~ll~~i~~~~~~~~iPviaaGGI~~~~~v~~al~~GA~gV~~GT~f 198 (332)
+.++...+.|+|.+.+..-++ .|+ ...+.++.++.+.+ ++||++.|||.+.+++.+++.+||++|++||.+
T Consensus 34 ~~a~~~~~~g~~~i~v~dld~~~~g~----~~~~~~i~~i~~~~---~~pv~~~GGI~~~ed~~~~~~~Ga~~vilg~~~ 106 (233)
T PRK00748 34 AQAKAWEDQGAKWLHLVDLDGAKAGK----PVNLELIEAIVKAV---DIPVQVGGGIRSLETVEALLDAGVSRVIIGTAA 106 (233)
T ss_pred HHHHHHHHcCCCEEEEEeCCccccCC----cccHHHHHHHHHHC---CCCEEEcCCcCCHHHHHHHHHcCCCEEEECchH
Confidence 446666678999988854321 122 23477888888776 799999999999999999999999999999999
Q ss_pred ccCcc
Q 020013 199 VASEE 203 (332)
Q Consensus 199 l~t~E 203 (332)
+..++
T Consensus 107 l~~~~ 111 (233)
T PRK00748 107 VKNPE 111 (233)
T ss_pred HhCHH
Confidence 97643
|
|
| >cd04734 OYE_like_3_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 3 | Back alignment and domain information |
|---|
Probab=97.79 E-value=0.00097 Score=63.38 Aligned_cols=77 Identities=22% Similarity=0.347 Sum_probs=55.7
Q ss_pred HHHHHcC-CCEEEEec-CCCC----cccC-----CCCchhhhHHHHHHHhCCCCCcEEeecCcCCHHHHHHHHHcC-cce
Q 020013 124 RKAVNAG-VDAIIVQG-REAG----GHVI-----GQDGLISLLPMVVDLIGDRDIPIIAAGGIVDARGYVAALSLG-AQG 191 (332)
Q Consensus 124 ~~a~~~g-~D~ivv~G-~eaG----Gh~~-----~~~~~~~ll~~i~~~~~~~~iPviaaGGI~~~~~v~~al~~G-A~g 191 (332)
+.+.+.| +|+|-+.+ .... .+.. .....+.++.++++.+ ++||++.|||.+++++.++++-| +|+
T Consensus 235 ~~l~~~G~vd~i~vs~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ik~~~---~ipvi~~G~i~~~~~~~~~l~~~~~D~ 311 (343)
T cd04734 235 ARLAAEGLIDYVNVSAGSYYTLLGLAHVVPSMGMPPGPFLPLAARIKQAV---DLPVFHAGRIRDPAEAEQALAAGHADM 311 (343)
T ss_pred HHHHhcCCCCEEEeCCCCCCcccccccccCCCCCCcchhHHHHHHHHHHc---CCCEEeeCCCCCHHHHHHHHHcCCCCe
Confidence 4556788 89999843 2111 0100 0112356677777776 79999999999999999999975 999
Q ss_pred eeeccccccCcc
Q 020013 192 ICLGTRFVASEE 203 (332)
Q Consensus 192 V~~GT~fl~t~E 203 (332)
|.+|..++..++
T Consensus 312 V~~gR~~ladP~ 323 (343)
T cd04734 312 VGMTRAHIADPH 323 (343)
T ss_pred eeecHHhHhCcc
Confidence 999999998764
|
Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase. One member of this subgroup, the Sinorhizobium meliloti stachydrine utilization protein stcD, has been idenified as a putative N-methylproline demethylase. |
| >cd04732 HisA HisA | Back alignment and domain information |
|---|
Probab=97.79 E-value=0.0001 Score=65.94 Aligned_cols=89 Identities=25% Similarity=0.312 Sum_probs=66.0
Q ss_pred HHHHHHHHHcCCCEEEEecCCCCcccCCCCchhhhHHHHHHHhCCCCCcEEeecCcCCHHHHHHHHHcCcceeeeccccc
Q 020013 120 FDEARKAVNAGVDAIIVQGREAGGHVIGQDGLISLLPMVVDLIGDRDIPIIAAGGIVDARGYVAALSLGAQGICLGTRFV 199 (332)
Q Consensus 120 ~~~a~~a~~~g~D~ivv~G~eaGGh~~~~~~~~~ll~~i~~~~~~~~iPviaaGGI~~~~~v~~al~~GA~gV~~GT~fl 199 (332)
.+.++...+.|+|.+.+..-.+.. . +....+.++.++.+.+ ++|+++.|||.+.+++.+++..|||.|++||..+
T Consensus 32 ~~~a~~~~~~g~d~l~v~dl~~~~-~-~~~~~~~~i~~i~~~~---~~pv~~~GgI~~~e~~~~~~~~Gad~vvigs~~l 106 (234)
T cd04732 32 VEVAKKWEEAGAKWLHVVDLDGAK-G-GEPVNLELIEEIVKAV---GIPVQVGGGIRSLEDIERLLDLGVSRVIIGTAAV 106 (234)
T ss_pred HHHHHHHHHcCCCEEEEECCCccc-c-CCCCCHHHHHHHHHhc---CCCEEEeCCcCCHHHHHHHHHcCCCEEEECchHH
Confidence 355666677899999886543321 1 1123477888888876 7999999999999999999999999999999988
Q ss_pred cCccCCCCHHHHHHHhcCC
Q 020013 200 ASEESYAHPEYKRKLVEMD 218 (332)
Q Consensus 200 ~t~Es~~~~~~k~~~~~~~ 218 (332)
.. ++.+++......
T Consensus 107 ~d-----p~~~~~i~~~~g 120 (234)
T cd04732 107 KN-----PELVKELLKEYG 120 (234)
T ss_pred hC-----hHHHHHHHHHcC
Confidence 54 334555555543
|
Phosphoribosylformimino-5-aminoimidazole carboxamide ribonucleotide (ProFAR) isomerase catalyzes the fourth step in histidine biosynthesis, an isomerisation of the aminoaldose moiety of ProFAR to the aminoketose of PRFAR (N-(5'-phospho-D-1'-ribulosylformimino)-5-amino-1-(5''-phospho-ribosyl)-4-imidazolecarboxamide). In bacteria and archaea, ProFAR isomerase is encoded by the HisA gene. |
| >PRK13813 orotidine 5'-phosphate decarboxylase; Provisional | Back alignment and domain information |
|---|
Probab=97.77 E-value=0.00062 Score=60.22 Aligned_cols=136 Identities=18% Similarity=0.154 Sum_probs=83.0
Q ss_pred HHHHHHHhhcCCcEEEEee-cCCCCHHHHHHHHhcCCcEEEEccCCC---cHHHHHHHHhCCCEEEEec--CCH------
Q 020013 53 DLIRKTRSLTERPFGVGVV-LAFPHNENIKAILSEKVAVLQVSWGEY---SEELVLEAHSAGVKVVPQV--GSF------ 120 (332)
Q Consensus 53 ~~i~~~r~~~~~p~gvnl~-~~~~~~~~~~~~~~~~~~~I~~~~g~~---~~~~i~~~~~~g~~v~~~v--~s~------ 120 (332)
+.++.+|+.++.++-+.++ +..+....++.+.+.|+|.|.+|.-.. ....++.+++.|++++..+ .++
T Consensus 45 ~~v~~ir~~~~i~~D~k~~di~~~~~~~~~~~~~~gad~vtvh~e~g~~~l~~~i~~~~~~g~~~~v~~~~~~~~~~~~~ 124 (215)
T PRK13813 45 GIIEELKRYAPVIADLKVADIPNTNRLICEAVFEAGAWGIIVHGFTGRDSLKAVVEAAAESGGKVFVVVEMSHPGALEFI 124 (215)
T ss_pred HHHHHHHhcCCEEEEeeccccHHHHHHHHHHHHhCCCCEEEEcCcCCHHHHHHHHHHHHhcCCeEEEEEeCCCCCCCCCH
Confidence 3466666655555556654 222223345778889999999995321 2345677788898876522 221
Q ss_pred -HHH----HHHHHcCCCEEEEecCCCCcccCCCCchhhhHHHHHHHhCCCCCcEEeecCcCCHH--HHHHHHHcCcceee
Q 020013 121 -DEA----RKAVNAGVDAIIVQGREAGGHVIGQDGLISLLPMVVDLIGDRDIPIIAAGGIVDAR--GYVAALSLGAQGIC 193 (332)
Q Consensus 121 -~~a----~~a~~~g~D~ivv~G~eaGGh~~~~~~~~~ll~~i~~~~~~~~iPviaaGGI~~~~--~v~~al~~GA~gV~ 193 (332)
+.. +.+.+.|.|+..+.. .....+.++++.... ++ .+..|||. .+ ++..++..|||.++
T Consensus 125 ~~~~~~v~~m~~e~G~~g~~~~~-----------~~~~~i~~l~~~~~~-~~-~ivdgGI~-~~g~~~~~~~~aGad~iV 190 (215)
T PRK13813 125 QPHADKLAKLAQEAGAFGVVAPA-----------TRPERVRYIRSRLGD-EL-KIISPGIG-AQGGKAADAIKAGADYVI 190 (215)
T ss_pred HHHHHHHHHHHHHhCCCeEEECC-----------CcchhHHHHHHhcCC-Cc-EEEeCCcC-CCCCCHHHHHHcCCCEEE
Confidence 122 224457777665421 113445566655421 22 33889995 44 48999999999999
Q ss_pred eccccccCc
Q 020013 194 LGTRFVASE 202 (332)
Q Consensus 194 ~GT~fl~t~ 202 (332)
+|+.++.++
T Consensus 191 ~Gr~I~~~~ 199 (215)
T PRK13813 191 VGRSIYNAA 199 (215)
T ss_pred ECcccCCCC
Confidence 999977654
|
|
| >PRK08385 nicotinate-nucleotide pyrophosphorylase; Provisional | Back alignment and domain information |
|---|
Probab=97.75 E-value=0.00021 Score=65.51 Aligned_cols=89 Identities=24% Similarity=0.266 Sum_probs=67.0
Q ss_pred HHHHHHHhC--CCEEEEecCCHHHHHHHHHcCCCEEEEecCCCCcccCCCCchhhhHHHHHHHhC----CCCCcEEeecC
Q 020013 101 ELVLEAHSA--GVKVVPQVGSFDEARKAVNAGVDAIIVQGREAGGHVIGQDGLISLLPMVVDLIG----DRDIPIIAAGG 174 (332)
Q Consensus 101 ~~i~~~~~~--g~~v~~~v~s~~~a~~a~~~g~D~ivv~G~eaGGh~~~~~~~~~ll~~i~~~~~----~~~iPviaaGG 174 (332)
+.++.++.. ..+|...|.+.+++..+.++|+|.|.++++. ...+.++++.+. ..++.+.++||
T Consensus 171 ~av~~~r~~~~~~kIeVEv~~leea~~a~~agaDiI~LDn~~-----------~e~l~~~v~~l~~~~~~~~~~leaSGG 239 (278)
T PRK08385 171 EAIRRAKEFSVYKVVEVEVESLEDALKAAKAGADIIMLDNMT-----------PEEIREVIEALKREGLRERVKIEVSGG 239 (278)
T ss_pred HHHHHHHHhCCCCcEEEEeCCHHHHHHHHHcCcCEEEECCCC-----------HHHHHHHHHHHHhcCcCCCEEEEEECC
Confidence 344555553 3678899999999999999999999997651 223344444331 12578999999
Q ss_pred cCCHHHHHHHHHcCcceeeeccccccC
Q 020013 175 IVDARGYVAALSLGAQGICLGTRFVAS 201 (332)
Q Consensus 175 I~~~~~v~~al~~GA~gV~~GT~fl~t 201 (332)
| +.+++.++.+.|+|.+.+|+.....
T Consensus 240 I-~~~ni~~yA~tGvD~Is~galt~sa 265 (278)
T PRK08385 240 I-TPENIEEYAKLDVDVISLGALTHSV 265 (278)
T ss_pred C-CHHHHHHHHHcCCCEEEeChhhcCC
Confidence 9 9999999999999999999875533
|
|
| >PRK14024 phosphoribosyl isomerase A; Provisional | Back alignment and domain information |
|---|
Probab=97.73 E-value=0.00013 Score=65.79 Aligned_cols=77 Identities=29% Similarity=0.334 Sum_probs=59.8
Q ss_pred HHHHHHHHHcCCCEEEEecCCC-CcccCCCCchhhhHHHHHHHhCCCCCcEEeecCcCCHHHHHHHHHcCcceeeecccc
Q 020013 120 FDEARKAVNAGVDAIIVQGREA-GGHVIGQDGLISLLPMVVDLIGDRDIPIIAAGGIVDARGYVAALSLGAQGICLGTRF 198 (332)
Q Consensus 120 ~~~a~~a~~~g~D~ivv~G~ea-GGh~~~~~~~~~ll~~i~~~~~~~~iPviaaGGI~~~~~v~~al~~GA~gV~~GT~f 198 (332)
.+.|+...+.|+|.+.+---++ .|+. ..+.+++++.+.+ .+||.+.|||.+.+++..++.+||+.|.+||..
T Consensus 35 ~~~a~~~~~~g~~~l~ivDLd~~~g~~----~n~~~i~~i~~~~---~~pv~vgGGirs~edv~~~l~~Ga~kvviGs~~ 107 (241)
T PRK14024 35 LDAALAWQRDGAEWIHLVDLDAAFGRG----SNRELLAEVVGKL---DVKVELSGGIRDDESLEAALATGCARVNIGTAA 107 (241)
T ss_pred HHHHHHHHHCCCCEEEEEeccccCCCC----ccHHHHHHHHHHc---CCCEEEcCCCCCHHHHHHHHHCCCCEEEECchH
Confidence 3556666677888777633221 1332 3468888998877 799999999999999999999999999999999
Q ss_pred ccCcc
Q 020013 199 VASEE 203 (332)
Q Consensus 199 l~t~E 203 (332)
+..+|
T Consensus 108 l~~p~ 112 (241)
T PRK14024 108 LENPE 112 (241)
T ss_pred hCCHH
Confidence 97655
|
|
| >cd00945 Aldolase_Class_I Class I aldolases | Back alignment and domain information |
|---|
Probab=97.71 E-value=0.0011 Score=57.36 Aligned_cols=158 Identities=23% Similarity=0.286 Sum_probs=91.3
Q ss_pred HHHHHHHhCCCceeecCCCCCCHHHHHHHHHHHHhhcCCcEEEEeecCC----C--CHHHHHHHHhcCCcEEEEc--cCC
Q 020013 26 ELVAAVANAGGLGLLRAPDWEAPDYLRDLIRKTRSLTERPFGVGVVLAF----P--HNENIKAILSEKVAVLQVS--WGE 97 (332)
Q Consensus 26 ~la~avs~aGglG~i~~~~~~~~e~~~~~i~~~r~~~~~p~gvnl~~~~----~--~~~~~~~~~~~~~~~I~~~--~g~ 97 (332)
.++....+.|.-|++..+ +.++...+.... .+.|+-+++-.+. . ..+..+.+.+.|+|.+.+. ++.
T Consensus 17 ~~~~~~~~~gv~gi~~~g-----~~i~~~~~~~~~-~~~~v~~~v~~~~~~~~~~~~~~~a~~a~~~Gad~i~v~~~~~~ 90 (201)
T cd00945 17 KLCDEAIEYGFAAVCVNP-----GYVRLAADALAG-SDVPVIVVVGFPTGLTTTEVKVAEVEEAIDLGADEIDVVINIGS 90 (201)
T ss_pred HHHHHHHHhCCcEEEECH-----HHHHHHHHHhCC-CCCeEEEEecCCCCCCcHHHHHHHHHHHHHcCCCEEEEeccHHH
Confidence 444555555655554432 333322222221 0356556554433 1 1345667788899999874 211
Q ss_pred -Cc---H---HHHHHHHhC---CCEEEEecC-----CHHHHHH----HHHcCCCEEEEecCCCCcccCCCCchhhhHHHH
Q 020013 98 -YS---E---ELVLEAHSA---GVKVVPQVG-----SFDEARK----AVNAGVDAIIVQGREAGGHVIGQDGLISLLPMV 158 (332)
Q Consensus 98 -~~---~---~~i~~~~~~---g~~v~~~v~-----s~~~a~~----a~~~g~D~ivv~G~eaGGh~~~~~~~~~ll~~i 158 (332)
++ . ++++.+.+. +++++.... +.++..+ +.+.|+|+|........++ ..+..+.++
T Consensus 91 ~~~~~~~~~~~~~~~i~~~~~~~~pv~iy~~p~~~~~~~~~~~~~~~~~~~g~~~iK~~~~~~~~~-----~~~~~~~~i 165 (201)
T cd00945 91 LKEGDWEEVLEEIAAVVEAADGGLPLKVILETRGLKTADEIAKAARIAAEAGADFIKTSTGFGGGG-----ATVEDVKLM 165 (201)
T ss_pred HhCCCHHHHHHHHHHHHHHhcCCceEEEEEECCCCCCHHHHHHHHHHHHHhCCCEEEeCCCCCCCC-----CCHHHHHHH
Confidence 11 2 344445443 788775432 4444333 4578999998743211111 234556666
Q ss_pred HHHhCCCCCcEEeecCcCCHHHHHHHHHcCcceeeec
Q 020013 159 VDLIGDRDIPIIAAGGIVDARGYVAALSLGAQGICLG 195 (332)
Q Consensus 159 ~~~~~~~~iPviaaGGI~~~~~v~~al~~GA~gV~~G 195 (332)
++..+. ++|+++.||+.+.+.+..++.+||+|+.+|
T Consensus 166 ~~~~~~-~~~v~~~gg~~~~~~~~~~~~~Ga~g~~~g 201 (201)
T cd00945 166 KEAVGG-RVGVKAAGGIKTLEDALAAIEAGADGIGTS 201 (201)
T ss_pred HHhccc-CCcEEEECCCCCHHHHHHHHHhccceeecC
Confidence 665531 479999999988999999999999999876
|
The class I aldolases use an active-site lysine which stablilzes a reaction intermediates via Schiff base formation, and have TIM beta/alpha barrel fold. The members of this family include 2-keto-3-deoxy-6-phosphogluconate (KDPG) and 2-keto-4-hydroxyglutarate (KHG) aldolases, transaldolase, dihydrodipicolinate synthase sub-family, Type I 3-dehydroquinate dehydratase, DeoC and DhnA proteins, and metal-independent fructose-1,6-bisphosphate aldolase. Although structurally similar, the class II aldolases use a different mechanism and are believed to have an independent evolutionary origin. |
| >TIGR01334 modD putative molybdenum utilization protein ModD | Back alignment and domain information |
|---|
Probab=97.70 E-value=0.00027 Score=64.74 Aligned_cols=87 Identities=14% Similarity=0.179 Sum_probs=65.9
Q ss_pred HHHHHHHHhC--CCEEEEecCCHHHHHHHHHcCCCEEEEecCCCCcccCCCCchhhhHHHHHHHhC--CCCCcEEeecCc
Q 020013 100 EELVLEAHSA--GVKVVPQVGSFDEARKAVNAGVDAIIVQGREAGGHVIGQDGLISLLPMVVDLIG--DRDIPIIAAGGI 175 (332)
Q Consensus 100 ~~~i~~~~~~--g~~v~~~v~s~~~a~~a~~~g~D~ivv~G~eaGGh~~~~~~~~~ll~~i~~~~~--~~~iPviaaGGI 175 (332)
.+.++.+++. ..+|...+.+.++++.+.++|+|.|.+++. .+ .-+.+..+.++ ..++.+-++|||
T Consensus 176 ~~av~~~r~~~~~~kIeVEv~tleea~ea~~~GaDiI~lDn~-------~~----e~l~~~v~~l~~~~~~~~leasGGI 244 (277)
T TIGR01334 176 GGAIGRLKQTAPERKITVEADTIEQALTVLQASPDILQLDKF-------TP----QQLHHLHERLKFFDHIPTLAAAGGI 244 (277)
T ss_pred HHHHHHHHHhCCCCCEEEECCCHHHHHHHHHcCcCEEEECCC-------CH----HHHHHHHHHHhccCCCEEEEEECCC
Confidence 3456666654 577889999999999999999999999643 11 22233333331 126789999999
Q ss_pred CCHHHHHHHHHcCcceeeecccc
Q 020013 176 VDARGYVAALSLGAQGICLGTRF 198 (332)
Q Consensus 176 ~~~~~v~~al~~GA~gV~~GT~f 198 (332)
+.+++.++...|+|.+.+|+-+
T Consensus 245 -~~~ni~~ya~~GvD~is~gal~ 266 (277)
T TIGR01334 245 -NPENIADYIEAGIDLFITSAPY 266 (277)
T ss_pred -CHHHHHHHHhcCCCEEEeCcce
Confidence 9999999999999999999864
|
The gene modD for a member of this family is found with molybdenum transport genes modABC in Rhodobacter capsulatus. However, disruption of modD causes only a 4-fold (rather than 500-fold for modA, modB, modC) change in the external molybdenum concentration required to suppress an alternative nitrogenase. ModD proteins are highly similar to nicotinate-nucleotide pyrophosphorylase (also called quinolinate phosphoribosyltransferase). The function unknown. |
| >PRK06559 nicotinate-nucleotide pyrophosphorylase; Provisional | Back alignment and domain information |
|---|
Probab=97.68 E-value=0.00056 Score=62.88 Aligned_cols=90 Identities=20% Similarity=0.241 Sum_probs=69.3
Q ss_pred HHHHHHHHhC---CCEEEEecCCHHHHHHHHHcCCCEEEEecCCCCcccCCCCchhhhHHHHHHHhCCCCCcEEeecCcC
Q 020013 100 EELVLEAHSA---GVKVVPQVGSFDEARKAVNAGVDAIIVQGREAGGHVIGQDGLISLLPMVVDLIGDRDIPIIAAGGIV 176 (332)
Q Consensus 100 ~~~i~~~~~~---g~~v~~~v~s~~~a~~a~~~g~D~ivv~G~eaGGh~~~~~~~~~ll~~i~~~~~~~~iPviaaGGI~ 176 (332)
.+-++++++. ..+|...|.|.++++.+.++|+|.|.+++. . .+-+.++++.++. ++.+-++|||
T Consensus 184 ~~av~~~r~~~~~~~kIeVEv~tleea~~a~~agaDiImLDnm-------s----pe~l~~av~~~~~-~~~leaSGGI- 250 (290)
T PRK06559 184 QKAIAQARAYAPFVKMVEVEVESLAAAEEAAAAGADIIMLDNM-------S----LEQIEQAITLIAG-RSRIECSGNI- 250 (290)
T ss_pred HHHHHHHHHhCCCCCeEEEECCCHHHHHHHHHcCCCEEEECCC-------C----HHHHHHHHHHhcC-ceEEEEECCC-
Confidence 3455666653 367889999999999999999999999765 1 2334455544433 6789999999
Q ss_pred CHHHHHHHHHcCcceeeeccccccCc
Q 020013 177 DARGYVAALSLGAQGICLGTRFVASE 202 (332)
Q Consensus 177 ~~~~v~~al~~GA~gV~~GT~fl~t~ 202 (332)
+.+++.++...|+|.+.+|.-.-..+
T Consensus 251 ~~~ni~~yA~tGVD~Is~galthsa~ 276 (290)
T PRK06559 251 DMTTISRFRGLAIDYVSSGSLTHSAK 276 (290)
T ss_pred CHHHHHHHHhcCCCEEEeCccccCCc
Confidence 99999999999999999998654333
|
|
| >PRK04128 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional | Back alignment and domain information |
|---|
Probab=97.67 E-value=0.00016 Score=64.67 Aligned_cols=75 Identities=17% Similarity=0.262 Sum_probs=54.9
Q ss_pred CHHH-HHHHHHcCCCEEEEecCCCCcccCCCCchhhhHHHHHHHhCCCCCcEEeecCcCCHHHHHHHHHcCcceeeeccc
Q 020013 119 SFDE-ARKAVNAGVDAIIVQGREAGGHVIGQDGLISLLPMVVDLIGDRDIPIIAAGGIVDARGYVAALSLGAQGICLGTR 197 (332)
Q Consensus 119 s~~~-a~~a~~~g~D~ivv~G~eaGGh~~~~~~~~~ll~~i~~~~~~~~iPviaaGGI~~~~~v~~al~~GA~gV~~GT~ 197 (332)
++.+ ++...+. +|.+++-..++- ..+....+.++.++.+.. ++||+++|||++.+++.+++.+|+++|++||.
T Consensus 31 dp~~~a~~~~~~-~~~l~ivDldga--~~g~~~n~~~i~~i~~~~---~~pv~~gGGIrs~edv~~l~~~G~~~vivGta 104 (228)
T PRK04128 31 DPVEIALRFSEY-VDKIHVVDLDGA--FEGKPKNLDVVKNIIRET---GLKVQVGGGLRTYESIKDAYEIGVENVIIGTK 104 (228)
T ss_pred CHHHHHHHHHHh-CCEEEEEECcch--hcCCcchHHHHHHHHhhC---CCCEEEcCCCCCHHHHHHHHHCCCCEEEECch
Confidence 4444 4444455 887777443311 012223477888888765 79999999999999999999999999999999
Q ss_pred cc
Q 020013 198 FV 199 (332)
Q Consensus 198 fl 199 (332)
.+
T Consensus 105 a~ 106 (228)
T PRK04128 105 AF 106 (228)
T ss_pred hc
Confidence 77
|
|
| >TIGR03572 WbuZ glycosyl amidation-associated protein WbuZ | Back alignment and domain information |
|---|
Probab=97.66 E-value=0.00023 Score=63.78 Aligned_cols=78 Identities=24% Similarity=0.355 Sum_probs=60.2
Q ss_pred HHHHHHHHcCCCEEEEecCCCCcccCCCCchhhhHHHHHHHhCCCCCcEEeecCcCCHHHHHHHHHcCcceeeecccccc
Q 020013 121 DEARKAVNAGVDAIIVQGREAGGHVIGQDGLISLLPMVVDLIGDRDIPIIAAGGIVDARGYVAALSLGAQGICLGTRFVA 200 (332)
Q Consensus 121 ~~a~~a~~~g~D~ivv~G~eaGGh~~~~~~~~~ll~~i~~~~~~~~iPviaaGGI~~~~~v~~al~~GA~gV~~GT~fl~ 200 (332)
+-++...+.|+|.+++...+..|.. ....+.++.++.+.. ++||+++|||.+.+++.+++..|+++|++||..+.
T Consensus 34 ~~a~~~~~~g~~~i~i~dl~~~~~~--~~~n~~~~~~i~~~~---~~pv~~~ggi~~~~d~~~~~~~G~~~vilg~~~l~ 108 (232)
T TIGR03572 34 NAARIYNAKGADELIVLDIDASKRG--REPLFELISNLAEEC---FMPLTVGGGIRSLEDAKKLLSLGADKVSINTAALE 108 (232)
T ss_pred HHHHHHHHcCCCEEEEEeCCCcccC--CCCCHHHHHHHHHhC---CCCEEEECCCCCHHHHHHHHHcCCCEEEEChhHhc
Confidence 4455566789998888655443321 123467788888776 79999999999999999999999999999999886
Q ss_pred Ccc
Q 020013 201 SEE 203 (332)
Q Consensus 201 t~E 203 (332)
.+|
T Consensus 109 ~~~ 111 (232)
T TIGR03572 109 NPD 111 (232)
T ss_pred CHH
Confidence 643
|
This clade of sequences is highly similar to the HisF protein, but generally represents the second HisF homolog in the genome where the other is an authentic HisF observed in the context of a complete histidine biosynthesis operon. The similarity between these WbuZ sequences and true HisFs is such that often the closest match by BLAST of a WbuZ is a HisF. Only by making a multiple sequence alignment is the homology relationship among the WbuZ sequences made apparent. WbuZ genes are invariably observed in the presence of a homolog of the HisH protein (designated WbuY) and a proposed N-acetyl sugar amidotransferase designated in WbuX in E. coli, IfnA in P. aeriginosa and PseA in C. jejuni. Similarly, this trio of genes is invariably found in the context of saccharide biosynthesis loci. It has been shown that the WbuYZ homologs are not essential components of the activity expressed by WbuX, leading to the proposal that these to pr |
| >PRK07896 nicotinate-nucleotide pyrophosphorylase; Provisional | Back alignment and domain information |
|---|
Probab=97.66 E-value=0.00039 Score=64.03 Aligned_cols=90 Identities=11% Similarity=0.158 Sum_probs=67.4
Q ss_pred HHHHHHHHhC--CCEEEEecCCHHHHHHHHHcCCCEEEEecCCCCcccCCCCchhhhHHHHHHHhC--CCCCcEEeecCc
Q 020013 100 EELVLEAHSA--GVKVVPQVGSFDEARKAVNAGVDAIIVQGREAGGHVIGQDGLISLLPMVVDLIG--DRDIPIIAAGGI 175 (332)
Q Consensus 100 ~~~i~~~~~~--g~~v~~~v~s~~~a~~a~~~g~D~ivv~G~eaGGh~~~~~~~~~ll~~i~~~~~--~~~iPviaaGGI 175 (332)
.+.++++++. ..++...|.|.+++..+.+.|+|+|.++++. ..-+++.++.++ ..++.+.++|||
T Consensus 187 ~~ai~~~r~~~~~~kIeVEv~tl~ea~eal~~gaDiI~LDnm~-----------~e~vk~av~~~~~~~~~v~ieaSGGI 255 (289)
T PRK07896 187 VAALRAVRAAAPDLPCEVEVDSLEQLDEVLAEGAELVLLDNFP-----------VWQTQEAVQRRDARAPTVLLESSGGL 255 (289)
T ss_pred HHHHHHHHHhCCCCCEEEEcCCHHHHHHHHHcCCCEEEeCCCC-----------HHHHHHHHHHHhccCCCEEEEEECCC
Confidence 4455666542 4678899999999999999999999997652 222333333221 126789999999
Q ss_pred CCHHHHHHHHHcCcceeeeccccccC
Q 020013 176 VDARGYVAALSLGAQGICLGTRFVAS 201 (332)
Q Consensus 176 ~~~~~v~~al~~GA~gV~~GT~fl~t 201 (332)
|.+++.++...|+|.+.+|+-....
T Consensus 256 -~~~ni~~yA~tGvD~Is~galt~sa 280 (289)
T PRK07896 256 -TLDTAAAYAETGVDYLAVGALTHSV 280 (289)
T ss_pred -CHHHHHHHHhcCCCEEEeChhhcCC
Confidence 9999999999999999999865533
|
|
| >KOG1436 consensus Dihydroorotate dehydrogenase [Nucleotide transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.63 E-value=8.9e-05 Score=67.67 Aligned_cols=89 Identities=24% Similarity=0.281 Sum_probs=64.0
Q ss_pred HHHcCCCEEEEecC---------------CCCcccCCCC--chhhhHHHHHHHhCCCCCcEEeecCcCCHHHHHHHHHcC
Q 020013 126 AVNAGVDAIIVQGR---------------EAGGHVIGQD--GLISLLPMVVDLIGDRDIPIIAAGGIVDARGYVAALSLG 188 (332)
Q Consensus 126 a~~~g~D~ivv~G~---------------eaGGh~~~~~--~~~~ll~~i~~~~~~~~iPviaaGGI~~~~~v~~al~~G 188 (332)
..+...|.+|+.|. |.||-.+.+. .....++++...... +||||..|||+++.|+.+-+.+|
T Consensus 275 ~kk~~idg~IvsnttVsrp~~~~~~~~~~etGGLsG~plk~~st~~vR~mY~lt~g-~IpiIG~GGV~SG~DA~EkiraG 353 (398)
T KOG1436|consen 275 VKKLNIDGLIVSNTTVSRPKASLVNKLKEETGGLSGPPLKPISTNTVRAMYTLTRG-KIPIIGCGGVSSGKDAYEKIRAG 353 (398)
T ss_pred HHHhCccceeecCceeecCccccccccccccCCCCCCccchhHHHHHHHHHHhccC-CCceEeecCccccHhHHHHHhcC
Confidence 45678999998653 4566542222 235667777776643 79999999999999999999999
Q ss_pred cceeeeccccccCccCCCCHHHHHHHhc
Q 020013 189 AQGICLGTRFVASEESYAHPEYKRKLVE 216 (332)
Q Consensus 189 A~gV~~GT~fl~t~Es~~~~~~k~~~~~ 216 (332)
|+-||++|+|..---. +-+..|+.+.+
T Consensus 354 ASlvQlyTal~yeGp~-i~~kIk~El~~ 380 (398)
T KOG1436|consen 354 ASLVQLYTALVYEGPA-IIEKIKRELSA 380 (398)
T ss_pred chHHHHHHHHhhcCch-hHHHHHHHHHH
Confidence 9999999998754322 33445555543
|
|
| >cd02812 PcrB_like PcrB_like proteins | Back alignment and domain information |
|---|
Probab=97.63 E-value=0.00018 Score=63.58 Aligned_cols=69 Identities=23% Similarity=0.347 Sum_probs=53.8
Q ss_pred HHHHHcCCCEEEEecCCCCcccCCCCchhhhHHHHHHHhCCCCCcEEeecCcCCHHHHHHHHHcCcceeeeccccccC
Q 020013 124 RKAVNAGVDAIIVQGREAGGHVIGQDGLISLLPMVVDLIGDRDIPIIAAGGIVDARGYVAALSLGAQGICLGTRFVAS 201 (332)
Q Consensus 124 ~~a~~~g~D~ivv~G~eaGGh~~~~~~~~~ll~~i~~~~~~~~iPviaaGGI~~~~~v~~al~~GA~gV~~GT~fl~t 201 (332)
+.++..|...|-+++. |.. ....++.++++... ++|++..|||.+++++.+++.+|||+|++||.+...
T Consensus 142 ~aae~~g~~ivyLe~S---G~~----~~~e~I~~v~~~~~--~~pl~vGGGIrs~e~a~~l~~aGAD~VVVGsai~~~ 210 (219)
T cd02812 142 LAAEYLGMPIVYLEYS---GAY----GPPEVVRAVKKVLG--DTPLIVGGGIRSGEQAKEMAEAGADTIVVGNIVEED 210 (219)
T ss_pred HHHHHcCCeEEEeCCC---CCc----CCHHHHHHHHHhcC--CCCEEEeCCCCCHHHHHHHHHcCCCEEEECchhhCC
Confidence 3456678777777622 221 33667778777652 589999999999999999999999999999999865
|
One member of this family, a protein from Archaeoglobus fulgidus, has been characterized as a (S)-3-O-geranylgeranylglyceryl phosphate synthase (AfGGGPS). AfGGGPS catalyzes the formation of an ether linkage between sn-glycerol-1-phosphate (G1P) and geranylgeranyl diphosphate (GGPP), the committed step in archaeal lipid biosynthesis. Therefore, it has been proposed that PcrB-like proteins are either prenyltransferases or are involved in lipoteichoic acid biosynthesis although the exact function is still unknown. |
| >PRK06106 nicotinate-nucleotide pyrophosphorylase; Provisional | Back alignment and domain information |
|---|
Probab=97.61 E-value=0.00079 Score=61.79 Aligned_cols=87 Identities=23% Similarity=0.263 Sum_probs=67.8
Q ss_pred HHHHHHHHhC---CCEEEEecCCHHHHHHHHHcCCCEEEEecCCCCcccCCCCchhhhHHHHHHHhCCCCCcEEeecCcC
Q 020013 100 EELVLEAHSA---GVKVVPQVGSFDEARKAVNAGVDAIIVQGREAGGHVIGQDGLISLLPMVVDLIGDRDIPIIAAGGIV 176 (332)
Q Consensus 100 ~~~i~~~~~~---g~~v~~~v~s~~~a~~a~~~g~D~ivv~G~eaGGh~~~~~~~~~ll~~i~~~~~~~~iPviaaGGI~ 176 (332)
.+-++++++. ..++...|.|.+++..+.++|+|.|.++++. ..-+.+.++.++. ..|+-++|||
T Consensus 181 ~~ai~~~r~~~~~~~kIeVEv~tleea~ea~~~gaDiI~LDn~s-----------~e~l~~av~~~~~-~~~leaSGGI- 247 (281)
T PRK06106 181 REAIRRARAGVGHLVKIEVEVDTLDQLEEALELGVDAVLLDNMT-----------PDTLREAVAIVAG-RAITEASGRI- 247 (281)
T ss_pred HHHHHHHHHhCCCCCcEEEEeCCHHHHHHHHHcCCCEEEeCCCC-----------HHHHHHHHHHhCC-CceEEEECCC-
Confidence 3455566654 3678899999999999999999999997651 2334454444432 5789999999
Q ss_pred CHHHHHHHHHcCcceeeeccccc
Q 020013 177 DARGYVAALSLGAQGICLGTRFV 199 (332)
Q Consensus 177 ~~~~v~~al~~GA~gV~~GT~fl 199 (332)
|.+++.++...|+|.+.+|+..-
T Consensus 248 ~~~ni~~yA~tGVD~Is~Galth 270 (281)
T PRK06106 248 TPETAPAIAASGVDLISVGWLTH 270 (281)
T ss_pred CHHHHHHHHhcCCCEEEeChhhc
Confidence 99999999999999999998644
|
|
| >PRK08185 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=97.60 E-value=0.0088 Score=55.12 Aligned_cols=173 Identities=20% Similarity=0.285 Sum_probs=110.3
Q ss_pred CCcHHHHHHHHhCC---CceeecC--C---CCCCHHHHHHHHHHHHhhcCCcEEEEeecCCCCHHHHHHHHhcCCcEEEE
Q 020013 22 ISGPELVAAVANAG---GLGLLRA--P---DWEAPDYLRDLIRKTRSLTERPFGVGVVLAFPHNENIKAILSEKVAVLQV 93 (332)
Q Consensus 22 ~s~~~la~avs~aG---glG~i~~--~---~~~~~e~~~~~i~~~r~~~~~p~gvnl~~~~~~~~~~~~~~~~~~~~I~~ 93 (332)
+.+.+.+.++-+|- ..++|-. . .+... .+...+..+.+....|+.+++=-- .+.+.+..+++.|.+.|.+
T Consensus 20 ~~n~e~~~avi~AAee~~sPvIl~~~~~~~~~~~~-~~~~~~~~~a~~~~vPV~lHLDHg-~~~e~i~~ai~~Gf~SVM~ 97 (283)
T PRK08185 20 VADSCFLRAVVEEAEANNAPAIIAIHPNELDFLGD-NFFAYVRERAKRSPVPFVIHLDHG-ATIEDVMRAIRCGFTSVMI 97 (283)
T ss_pred eCCHHHHHHHHHHHHHhCCCEEEEeCcchhhhccH-HHHHHHHHHHHHCCCCEEEECCCC-CCHHHHHHHHHcCCCEEEE
Confidence 45666666665542 3333311 1 12222 355556655555677887775322 2357788899999999988
Q ss_pred ccCCCc-HH-------HHHHHHhCCCEEEE----------------e---cCCHHHHHHHHHc-CCCEEEE-----ecCC
Q 020013 94 SWGEYS-EE-------LVLEAHSAGVKVVP----------------Q---VGSFDEARKAVNA-GVDAIIV-----QGRE 140 (332)
Q Consensus 94 ~~g~~~-~~-------~i~~~~~~g~~v~~----------------~---v~s~~~a~~a~~~-g~D~ivv-----~G~e 140 (332)
.....| ++ +++.++..|+.+=. . .++++++....+. |+|++.+ .|..
T Consensus 98 D~S~l~~eeNi~~t~~vv~~a~~~gv~vE~ElG~vg~~e~~~~~~~~~~~~t~peea~~f~~~TgvD~LAvaiGt~HG~y 177 (283)
T PRK08185 98 DGSLLPYEENVALTKEVVELAHKVGVSVEGELGTIGNTGTSIEGGVSEIIYTDPEQAEDFVSRTGVDTLAVAIGTAHGIY 177 (283)
T ss_pred eCCCCCHHHHHHHHHHHHHHHHHcCCeEEEEEeeccCcccccccccccccCCCHHHHHHHHHhhCCCEEEeccCcccCCc
Confidence 633333 22 33444555554310 1 4588999998876 9999988 3332
Q ss_pred CCcccCCCCchhhhHHHHHHHhCCCCCcEEeecCcCCH-HHHHHHHHcCcceeeeccccccC
Q 020013 141 AGGHVIGQDGLISLLPMVVDLIGDRDIPIIAAGGIVDA-RGYVAALSLGAQGICLGTRFVAS 201 (332)
Q Consensus 141 aGGh~~~~~~~~~ll~~i~~~~~~~~iPviaaGGI~~~-~~v~~al~~GA~gV~~GT~fl~t 201 (332)
.++. .+.-.+.++.++++.+ ++|+++-||++.+ +++.+++.+|..-|=++|.+..+
T Consensus 178 ~~~~--kp~L~~e~l~~I~~~~---~iPLVlHGgsg~~~e~~~~ai~~GI~KiNi~T~l~~a 234 (283)
T PRK08185 178 PKDK--KPELQMDLLKEINERV---DIPLVLHGGSANPDAEIAESVQLGVGKINISSDMKYA 234 (283)
T ss_pred CCCC--CCCcCHHHHHHHHHhh---CCCEEEECCCCCCHHHHHHHHHCCCeEEEeChHHHHH
Confidence 2221 1223488999998887 7999999998665 55788999999999999986543
|
|
| >PRK13585 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional | Back alignment and domain information |
|---|
Probab=97.60 E-value=0.00025 Score=63.84 Aligned_cols=78 Identities=22% Similarity=0.400 Sum_probs=59.0
Q ss_pred HHHHHHHHHcCCCEEEEecCCCCcccCCCCchhhhHHHHHHHhCCCCCcEEeecCcCCHHHHHHHHHcCcceeeeccccc
Q 020013 120 FDEARKAVNAGVDAIIVQGREAGGHVIGQDGLISLLPMVVDLIGDRDIPIIAAGGIVDARGYVAALSLGAQGICLGTRFV 199 (332)
Q Consensus 120 ~~~a~~a~~~g~D~ivv~G~eaGGh~~~~~~~~~ll~~i~~~~~~~~iPviaaGGI~~~~~v~~al~~GA~gV~~GT~fl 199 (332)
.+.++.+.+.|+|.+.+.--+..-. +....+..+.++.+.. ++|+++.|||.+.+++..++.+||++|.+||..+
T Consensus 35 ~e~a~~~~~~G~~~l~i~dl~~~~~--~~~~~~~~i~~i~~~~---~~~l~v~GGi~~~~~~~~~~~~Ga~~v~iGs~~~ 109 (241)
T PRK13585 35 VEVAKRWVDAGAETLHLVDLDGAFE--GERKNAEAIEKIIEAV---GVPVQLGGGIRSAEDAASLLDLGVDRVILGTAAV 109 (241)
T ss_pred HHHHHHHHHcCCCEEEEEechhhhc--CCcccHHHHHHHHHHc---CCcEEEcCCcCCHHHHHHHHHcCCCEEEEChHHh
Confidence 3556667788999988754321110 1223466777777766 7999999999999999999999999999999987
Q ss_pred cCc
Q 020013 200 ASE 202 (332)
Q Consensus 200 ~t~ 202 (332)
..+
T Consensus 110 ~~~ 112 (241)
T PRK13585 110 ENP 112 (241)
T ss_pred hCh
Confidence 543
|
|
| >PLN02716 nicotinate-nucleotide diphosphorylase (carboxylating) | Back alignment and domain information |
|---|
Probab=97.59 E-value=0.0009 Score=61.96 Aligned_cols=96 Identities=17% Similarity=0.198 Sum_probs=69.9
Q ss_pred HHHHHHHHh------CCCEEEEecCCHHHHHHHHH------cCCCEEEEecCCCCcccCCCCchhhhHHHHHHHhCCCCC
Q 020013 100 EELVLEAHS------AGVKVVPQVGSFDEARKAVN------AGVDAIIVQGREAGGHVIGQDGLISLLPMVVDLIGDRDI 167 (332)
Q Consensus 100 ~~~i~~~~~------~g~~v~~~v~s~~~a~~a~~------~g~D~ivv~G~eaGGh~~~~~~~~~ll~~i~~~~~~~~i 167 (332)
.+.++++++ ...+|...|.|.++++.+.+ +|+|.|.++++-..... . ..+...+.+.++.++. ..
T Consensus 187 ~~av~~~r~~~~~~~~~~kIeVEv~tleea~ea~~~~~~~~agaDiImLDnm~~~~~~-~-~~~~e~l~~av~~~~~-~~ 263 (308)
T PLN02716 187 TNAVQSADKYLEEKGLSMKIEVETRTLEEVKEVLEYLSDTKTSLTRVMLDNMVVPLEN-G-DVDVSMLKEAVELING-RF 263 (308)
T ss_pred HHHHHHHHHhhhhcCCCeeEEEEECCHHHHHHHHHhcccccCCCCEEEeCCCcccccc-c-CCCHHHHHHHHHhhCC-Cc
Confidence 455666655 13578899999999999999 99999999887211110 0 1123445555554432 57
Q ss_pred cEEeecCcCCHHHHHHHHHcCcceeeeccccc
Q 020013 168 PIIAAGGIVDARGYVAALSLGAQGICLGTRFV 199 (332)
Q Consensus 168 PviaaGGI~~~~~v~~al~~GA~gV~~GT~fl 199 (332)
|+-++||| +.+++.++...|+|.+.+|.-.-
T Consensus 264 ~lEaSGGI-t~~ni~~yA~tGVD~Is~Galth 294 (308)
T PLN02716 264 ETEASGNV-TLDTVHKIGQTGVTYISSGALTH 294 (308)
T ss_pred eEEEECCC-CHHHHHHHHHcCCCEEEeCcccc
Confidence 89999999 99999999999999999998543
|
|
| >PRK06978 nicotinate-nucleotide pyrophosphorylase; Provisional | Back alignment and domain information |
|---|
Probab=97.55 E-value=0.0008 Score=61.95 Aligned_cols=87 Identities=16% Similarity=0.252 Sum_probs=67.3
Q ss_pred HHHHHHHHhC--CCEEEEecCCHHHHHHHHHcCCCEEEEecCCCCcccCCCCchhhhHHHHHHHhCCCCCcEEeecCcCC
Q 020013 100 EELVLEAHSA--GVKVVPQVGSFDEARKAVNAGVDAIIVQGREAGGHVIGQDGLISLLPMVVDLIGDRDIPIIAAGGIVD 177 (332)
Q Consensus 100 ~~~i~~~~~~--g~~v~~~v~s~~~a~~a~~~g~D~ivv~G~eaGGh~~~~~~~~~ll~~i~~~~~~~~iPviaaGGI~~ 177 (332)
.+.++++++. ..+|...|.|.++++.+.++|+|.|.++++ . .+.+.+.++.++. ++.+-++||| |
T Consensus 193 ~~av~~~r~~~~~~kIeVEvetleea~eA~~aGaDiImLDnm-------s----pe~l~~av~~~~~-~~~lEaSGGI-t 259 (294)
T PRK06978 193 GAALDAAFALNAGVPVQIEVETLAQLETALAHGAQSVLLDNF-------T----LDMMREAVRVTAG-RAVLEVSGGV-N 259 (294)
T ss_pred HHHHHHHHHhCCCCcEEEEcCCHHHHHHHHHcCCCEEEECCC-------C----HHHHHHHHHhhcC-CeEEEEECCC-C
Confidence 4556666653 357888999999999999999999999765 1 2334444444432 5789999999 9
Q ss_pred HHHHHHHHHcCcceeeeccccc
Q 020013 178 ARGYVAALSLGAQGICLGTRFV 199 (332)
Q Consensus 178 ~~~v~~al~~GA~gV~~GT~fl 199 (332)
.+++.++...|+|.+.+|.-.-
T Consensus 260 ~~ni~~yA~tGVD~IS~galth 281 (294)
T PRK06978 260 FDTVRAFAETGVDRISIGALTK 281 (294)
T ss_pred HHHHHHHHhcCCCEEEeCcccc
Confidence 9999999999999999998643
|
|
| >KOG4201 consensus Anthranilate synthase component II [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.52 E-value=0.00056 Score=59.24 Aligned_cols=116 Identities=16% Similarity=0.241 Sum_probs=84.4
Q ss_pred HHHHhcCCcEEEEccCCCcH----HHHHHHHhCCCEEEEecCCHHHHHHHHHcCCCEEEEecCCCCcccCC--CCchhhh
Q 020013 81 KAILSEKVAVLQVSWGEYSE----ELVLEAHSAGVKVVPQVGSFDEARKAVNAGVDAIIVQGREAGGHVIG--QDGLISL 154 (332)
Q Consensus 81 ~~~~~~~~~~I~~~~g~~~~----~~i~~~~~~g~~v~~~v~s~~~a~~a~~~g~D~ivv~G~eaGGh~~~--~~~~~~l 154 (332)
-.+.-.|+|.|.+-....+. .+.+..++.|+.-+..|++.+|..++++.|+..|-+.++.- |.+. -..+-.|
T Consensus 153 ~~aR~~GADaVLLIvamLs~~~lk~l~k~~K~L~me~LVEVn~~eEm~raleiGakvvGvNNRnL--~sFeVDlstTskL 230 (289)
T KOG4201|consen 153 YEARLKGADAVLLIVAMLSDLLLKELYKISKDLGMEPLVEVNDEEEMQRALEIGAKVVGVNNRNL--HSFEVDLSTTSKL 230 (289)
T ss_pred HHHHhcCCceeehHHHHcChHHHHHHHHHHHHcCCcceeeeccHHHHHHHHHhCcEEEeecCCcc--ceeeechhhHHHH
Confidence 34455689998764332232 44556677899999999999999999999999998876532 2211 0122334
Q ss_pred HHHHHHHhCCCCCcEEeecCcCCHHHHHHHHHcCcceeeeccccccCcc
Q 020013 155 LPMVVDLIGDRDIPIIAAGGIVDARGYVAALSLGAQGICLGTRFVASEE 203 (332)
Q Consensus 155 l~~i~~~~~~~~iPviaaGGI~~~~~v~~al~~GA~gV~~GT~fl~t~E 203 (332)
+..+.+ ++-+++-.||.+++|++.+-..|..+|.+|-.+|....
T Consensus 231 ~E~i~k-----Dvilva~SGi~tpdDia~~q~~GV~avLVGEslmk~sD 274 (289)
T KOG4201|consen 231 LEGIPK-----DVILVALSGIFTPDDIAKYQKAGVKAVLVGESLMKQSD 274 (289)
T ss_pred HhhCcc-----ceEEEeccCCCCHHHHHHHHHcCceEEEecHHHHhccC
Confidence 433332 67799999999999999999999999999999887643
|
|
| >PRK06096 molybdenum transport protein ModD; Provisional | Back alignment and domain information |
|---|
Probab=97.52 E-value=0.00061 Score=62.67 Aligned_cols=85 Identities=14% Similarity=0.104 Sum_probs=65.0
Q ss_pred HHHHHHHhC--CCEEEEecCCHHHHHHHHHcCCCEEEEecCCCCcccCCCCchhhhHHHHHHHhC--CCCCcEEeecCcC
Q 020013 101 ELVLEAHSA--GVKVVPQVGSFDEARKAVNAGVDAIIVQGREAGGHVIGQDGLISLLPMVVDLIG--DRDIPIIAAGGIV 176 (332)
Q Consensus 101 ~~i~~~~~~--g~~v~~~v~s~~~a~~a~~~g~D~ivv~G~eaGGh~~~~~~~~~ll~~i~~~~~--~~~iPviaaGGI~ 176 (332)
+.++.+++. ..+|...+.|.++++++.++|+|.|.++++ . ...+.++++.++ ..++.+-++|||
T Consensus 178 ~av~~~r~~~~~~kIeVEv~tleqa~ea~~agaDiI~LDn~-------~----~e~l~~av~~~~~~~~~~~leaSGGI- 245 (284)
T PRK06096 178 GAINQLRRHAPEKKIVVEADTPKEAIAALRAQPDVLQLDKF-------S----PQQATEIAQIAPSLAPHCTLSLAGGI- 245 (284)
T ss_pred HHHHHHHHhCCCCCEEEECCCHHHHHHHHHcCCCEEEECCC-------C----HHHHHHHHHHhhccCCCeEEEEECCC-
Confidence 445555553 467889999999999999999999999654 1 233444444332 126789999999
Q ss_pred CHHHHHHHHHcCcceeeeccc
Q 020013 177 DARGYVAALSLGAQGICLGTR 197 (332)
Q Consensus 177 ~~~~v~~al~~GA~gV~~GT~ 197 (332)
|.+++.++...|+|.+.+|.-
T Consensus 246 ~~~ni~~yA~tGvD~Is~gal 266 (284)
T PRK06096 246 NLNTLKNYADCGIRLFITSAP 266 (284)
T ss_pred CHHHHHHHHhcCCCEEEECcc
Confidence 999999999999999988875
|
|
| >PRK01033 imidazole glycerol phosphate synthase subunit HisF; Provisional | Back alignment and domain information |
|---|
Probab=97.50 E-value=0.00047 Score=62.86 Aligned_cols=88 Identities=18% Similarity=0.228 Sum_probs=65.1
Q ss_pred HHHHHHHHHcCCCEEEEecCCCCcccCCCCchhhhHHHHHHHhCCCCCcEEeecCcCCHHHHHHHHHcCcceeeeccccc
Q 020013 120 FDEARKAVNAGVDAIIVQGREAGGHVIGQDGLISLLPMVVDLIGDRDIPIIAAGGIVDARGYVAALSLGAQGICLGTRFV 199 (332)
Q Consensus 120 ~~~a~~a~~~g~D~ivv~G~eaGGh~~~~~~~~~ll~~i~~~~~~~~iPviaaGGI~~~~~v~~al~~GA~gV~~GT~fl 199 (332)
.+.++...+.|+|.+.+.--++-|. +....+.++.++.+.. ++||++.|||.+.+++.+++.+|+++|.+||..+
T Consensus 33 ~~~a~~~~~~g~~~l~i~Dl~~~~~--~~~~n~~~i~~i~~~~---~~pv~~gGGi~s~~d~~~l~~~G~~~vvigs~~~ 107 (258)
T PRK01033 33 INAVRIFNEKEVDELIVLDIDASKR--GSEPNYELIENLASEC---FMPLCYGGGIKTLEQAKKIFSLGVEKVSINTAAL 107 (258)
T ss_pred HHHHHHHHHcCCCEEEEEECCCCcC--CCcccHHHHHHHHHhC---CCCEEECCCCCCHHHHHHHHHCCCCEEEEChHHh
Confidence 3456667788999998865543332 1123477888888876 7999999999999999999999999999999877
Q ss_pred cCccCCCCHHHHHHHhcC
Q 020013 200 ASEESYAHPEYKRKLVEM 217 (332)
Q Consensus 200 ~t~Es~~~~~~k~~~~~~ 217 (332)
..+ ...++.+...
T Consensus 108 ~~~-----~~~~~~~~~~ 120 (258)
T PRK01033 108 EDP-----DLITEAAERF 120 (258)
T ss_pred cCH-----HHHHHHHHHh
Confidence 553 3445544443
|
|
| >PRK13587 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional | Back alignment and domain information |
|---|
Probab=97.48 E-value=0.00045 Score=62.04 Aligned_cols=89 Identities=15% Similarity=0.107 Sum_probs=65.0
Q ss_pred CCH-HHHHHHHH-cCCCEEEEecCCC--CcccCCCCchhhhHHHHHHHhCCCCCcEEeecCcCCHHHHHHHHHcCcceee
Q 020013 118 GSF-DEARKAVN-AGVDAIIVQGREA--GGHVIGQDGLISLLPMVVDLIGDRDIPIIAAGGIVDARGYVAALSLGAQGIC 193 (332)
Q Consensus 118 ~s~-~~a~~a~~-~g~D~ivv~G~ea--GGh~~~~~~~~~ll~~i~~~~~~~~iPviaaGGI~~~~~v~~al~~GA~gV~ 193 (332)
.++ +.|+...+ .|+|.+.+---++ .||. ..+.++.++.+.+ ++||.+.|||.+.+++.+++.+||+-|+
T Consensus 31 ~dp~~~a~~~~~~~Ga~~l~ivDLd~a~~~~~----~n~~~I~~i~~~~---~~pi~vGGGIrs~e~v~~~l~~Ga~kvv 103 (234)
T PRK13587 31 RSAEESIAYYSQFECVNRIHIVDLIGAKAQHA----REFDYIKSLRRLT---TKDIEVGGGIRTKSQIMDYFAAGINYCI 103 (234)
T ss_pred CCHHHHHHHHHhccCCCEEEEEECcccccCCc----chHHHHHHHHhhc---CCeEEEcCCcCCHHHHHHHHHCCCCEEE
Confidence 354 55566666 5899888743322 1332 3477888888766 7999999999999999999999999999
Q ss_pred eccccccCccCCCCHHHHHHHhcCC
Q 020013 194 LGTRFVASEESYAHPEYKRKLVEMD 218 (332)
Q Consensus 194 ~GT~fl~t~Es~~~~~~k~~~~~~~ 218 (332)
+||..+..+| ..++...+-.
T Consensus 104 igt~a~~~~~-----~l~~~~~~fg 123 (234)
T PRK13587 104 VGTKGIQDTD-----WLKEMAHTFP 123 (234)
T ss_pred ECchHhcCHH-----HHHHHHHHcC
Confidence 9999886643 4555544443
|
|
| >PRK06543 nicotinate-nucleotide pyrophosphorylase; Provisional | Back alignment and domain information |
|---|
Probab=97.47 E-value=0.00077 Score=61.81 Aligned_cols=87 Identities=22% Similarity=0.272 Sum_probs=66.7
Q ss_pred HHHHHHHHhC---CCEEEEecCCHHHHHHHHHcCCCEEEEecCCCCcccCCCCchhhhHHHHHHHhCCCCCcEEeecCcC
Q 020013 100 EELVLEAHSA---GVKVVPQVGSFDEARKAVNAGVDAIIVQGREAGGHVIGQDGLISLLPMVVDLIGDRDIPIIAAGGIV 176 (332)
Q Consensus 100 ~~~i~~~~~~---g~~v~~~v~s~~~a~~a~~~g~D~ivv~G~eaGGh~~~~~~~~~ll~~i~~~~~~~~iPviaaGGI~ 176 (332)
.+.++++++. ..+|...|.|.+++..+.++|+|.|.++++ . ..-+.+.++.++. ...+.++|||
T Consensus 180 ~~av~~~r~~~~~~~kIeVEv~slee~~ea~~~gaDiImLDn~-------s----~e~l~~av~~~~~-~~~leaSGgI- 246 (281)
T PRK06543 180 TEALRHVRAQLGHTTHVEVEVDRLDQIEPVLAAGVDTIMLDNF-------S----LDDLREGVELVDG-RAIVEASGNV- 246 (281)
T ss_pred HHHHHHHHHhCCCCCcEEEEeCCHHHHHHHHhcCCCEEEECCC-------C----HHHHHHHHHHhCC-CeEEEEECCC-
Confidence 3455555553 367889999999999999999999999765 1 2233444444432 4689999999
Q ss_pred CHHHHHHHHHcCcceeeeccccc
Q 020013 177 DARGYVAALSLGAQGICLGTRFV 199 (332)
Q Consensus 177 ~~~~v~~al~~GA~gV~~GT~fl 199 (332)
|.+++.++...|+|.+.+|+-.-
T Consensus 247 ~~~ni~~yA~tGVD~Is~galth 269 (281)
T PRK06543 247 NLNTVGAIASTGVDVISVGALTH 269 (281)
T ss_pred CHHHHHHHHhcCCCEEEeCcccc
Confidence 99999999999999999998543
|
|
| >COG1830 FbaB DhnA-type fructose-1,6-bisphosphate aldolase and related enzymes [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.47 E-value=0.0074 Score=54.43 Aligned_cols=175 Identities=23% Similarity=0.350 Sum_probs=102.6
Q ss_pred CccceecC-CCCCCCCcHHHHHHHHhCCCceeecCCCCCCHHHHHHHHHHHHhhcCCcEEEEeecCC-----CC----HH
Q 020013 9 FEYGIVQA-PLGPDISGPELVAAVANAGGLGLLRAPDWEAPDYLRDLIRKTRSLTERPFGVGVVLAF-----PH----NE 78 (332)
Q Consensus 9 ~~~Pii~a-pM~~g~s~~~la~avs~aGglG~i~~~~~~~~e~~~~~i~~~r~~~~~p~gvnl~~~~-----~~----~~ 78 (332)
.++-|-.+ |.. +..+|+-..+..-.|+...+.. ++-.++..-.... .+.|+-+.+.... +. ..
T Consensus 29 ~DhGv~~g~p~~-gl~d~e~~v~~v~~~g~dav~~----~~G~~~~~~~~y~--~dvplivkl~~~t~l~~~~~~~~~~~ 101 (265)
T COG1830 29 MDHGVEHGNPIE-GLEDPENIVAKVAEAGADAVAM----TPGIARSVHRGYA--HDVPLIVKLNGSTSLSPDPNDQVLVA 101 (265)
T ss_pred cccccccCCCcc-cccCHHHHHHHHHhcCCCEEEe----cHhHHhhcCcccc--CCcCEEEEeccccccCCCcccceeee
Confidence 34555555 664 5777776655555555555543 2222211111111 1566666544321 11 12
Q ss_pred HHHHHHhcCCcEEEEc--cCCCcH--------HHHHHHHhCCCEEEEec------------CCHH----HHHHHHHcCCC
Q 020013 79 NIKAILSEKVAVLQVS--WGEYSE--------ELVLEAHSAGVKVVPQV------------GSFD----EARKAVNAGVD 132 (332)
Q Consensus 79 ~~~~~~~~~~~~I~~~--~g~~~~--------~~i~~~~~~g~~v~~~v------------~s~~----~a~~a~~~g~D 132 (332)
.++.+...++|+|..+ +|.+.+ ++++.+++.|++++..+ .+.+ .++.+.+.|+|
T Consensus 102 ~ve~ai~lgadAV~~~Vy~Gse~e~~~i~~~~~v~~~a~~~Gmp~v~~~YpRg~~~~~~~~~d~~~v~~aaRlaaelGAD 181 (265)
T COG1830 102 TVEDAIRLGADAVGATVYVGSETEREMIENISQVVEDAHELGMPLVAWAYPRGPAIKDEYHRDADLVGYAARLAAELGAD 181 (265)
T ss_pred eHHHHHhCCCcEEEEEEecCCcchHHHHHHHHHHHHHHHHcCCceEEEEeccCCcccccccccHHHHHHHHHHHHHhcCC
Confidence 3677788899988654 565433 23345567899877532 1222 23457789999
Q ss_pred EEEEecCCCCcccCCCCchhhhHHHHHHHhCCCCCcEEeecCcCC-H-----HHHHHHHHcCcceeeeccccccCcc
Q 020013 133 AIIVQGREAGGHVIGQDGLISLLPMVVDLIGDRDIPIIAAGGIVD-A-----RGYVAALSLGAQGICLGTRFVASEE 203 (332)
Q Consensus 133 ~ivv~G~eaGGh~~~~~~~~~ll~~i~~~~~~~~iPviaaGGI~~-~-----~~v~~al~~GA~gV~~GT~fl~t~E 203 (332)
+|.+.=+ + ...-++++.+.. .+||+.+||=.+ . +-+.+++..||.|+.+|.-++..+.
T Consensus 182 IiK~~yt-------g---~~e~F~~vv~~~---~vpVviaGG~k~~~~~~~l~~~~~ai~aGa~G~~~GRNifQ~~~ 245 (265)
T COG1830 182 IIKTKYT-------G---DPESFRRVVAAC---GVPVVIAGGPKTETEREFLEMVTAAIEAGAMGVAVGRNIFQHED 245 (265)
T ss_pred eEeecCC-------C---ChHHHHHHHHhC---CCCEEEeCCCCCCChHHHHHHHHHHHHccCcchhhhhhhhccCC
Confidence 9987321 1 124456677666 699999999876 1 2345677899999999988776644
|
|
| >PRK09016 quinolinate phosphoribosyltransferase; Validated | Back alignment and domain information |
|---|
Probab=97.47 E-value=0.00071 Score=62.39 Aligned_cols=86 Identities=20% Similarity=0.208 Sum_probs=66.2
Q ss_pred HHHHHHHHhC--CCEEEEecCCHHHHHHHHHcCCCEEEEecCCCCcccCCCCchhhhHHHHHHHhCCCCCcEEeecCcCC
Q 020013 100 EELVLEAHSA--GVKVVPQVGSFDEARKAVNAGVDAIIVQGREAGGHVIGQDGLISLLPMVVDLIGDRDIPIIAAGGIVD 177 (332)
Q Consensus 100 ~~~i~~~~~~--g~~v~~~v~s~~~a~~a~~~g~D~ivv~G~eaGGh~~~~~~~~~ll~~i~~~~~~~~iPviaaGGI~~ 177 (332)
.+.++++++. ..++...|.|.+++..+.++|+|+|.++++. ..-++++++..+. ++.+-++||| |
T Consensus 196 ~~av~~~r~~~~~~kIeVEv~sleea~ea~~~gaDiI~LDn~s-----------~e~~~~av~~~~~-~~~ieaSGGI-~ 262 (296)
T PRK09016 196 RQAVEKAFWLHPDVPVEVEVENLDELDQALKAGADIIMLDNFT-----------TEQMREAVKRTNG-RALLEVSGNV-T 262 (296)
T ss_pred HHHHHHHHHhCCCCCEEEEeCCHHHHHHHHHcCCCEEEeCCCC-----------hHHHHHHHHhhcC-CeEEEEECCC-C
Confidence 3445555543 4678899999999999999999999997651 1333444444432 6889999999 9
Q ss_pred HHHHHHHHHcCcceeeecccc
Q 020013 178 ARGYVAALSLGAQGICLGTRF 198 (332)
Q Consensus 178 ~~~v~~al~~GA~gV~~GT~f 198 (332)
.+++.++...|+|.+.+|+-.
T Consensus 263 ~~ni~~yA~tGVD~Is~galt 283 (296)
T PRK09016 263 LETLREFAETGVDFISVGALT 283 (296)
T ss_pred HHHHHHHHhcCCCEEEeCccc
Confidence 999999999999999999854
|
|
| >PRK08255 salicylyl-CoA 5-hydroxylase; Reviewed | Back alignment and domain information |
|---|
Probab=97.46 E-value=0.0023 Score=67.26 Aligned_cols=120 Identities=18% Similarity=0.164 Sum_probs=79.0
Q ss_pred HHHHhcCCcEEEEccC---------CC-------------------cHHHHHHHHhC---CCEEEEecC---------CH
Q 020013 81 KAILSEKVAVLQVSWG---------EY-------------------SEELVLEAHSA---GVKVVPQVG---------SF 120 (332)
Q Consensus 81 ~~~~~~~~~~I~~~~g---------~~-------------------~~~~i~~~~~~---g~~v~~~v~---------s~ 120 (332)
+.+.++|.|.|.+|.+ ++ +.++++.+++. +.+|...++ +.
T Consensus 558 ~~a~~aGfDgveih~ahGyLl~qFlsp~~N~RtD~yGGslenR~r~~~eiv~~ir~~~~~~~~v~~ri~~~~~~~~g~~~ 637 (765)
T PRK08255 558 RRAAEAGFDWLELHCAHGYLLSSFISPLTNQRTDEYGGSLENRLRYPLEVFRAVRAVWPAEKPMSVRISAHDWVEGGNTP 637 (765)
T ss_pred HHHHHcCCCEEEEecccchHHHHhcCCCCCCCCCCCCCCHHHHhHHHHHHHHHHHHhcCCCCeeEEEEccccccCCCCCH
Confidence 3456789999999855 21 12455566653 455665443 23
Q ss_pred HH----HHHHHHcCCCEEEEec-CCCC-ccc-CCCCchhhhHHHHHHHhCCCCCcEEeecCcCCHHHHHHHHHcC-ccee
Q 020013 121 DE----ARKAVNAGVDAIIVQG-REAG-GHV-IGQDGLISLLPMVVDLIGDRDIPIIAAGGIVDARGYVAALSLG-AQGI 192 (332)
Q Consensus 121 ~~----a~~a~~~g~D~ivv~G-~eaG-Gh~-~~~~~~~~ll~~i~~~~~~~~iPviaaGGI~~~~~v~~al~~G-A~gV 192 (332)
++ ++.+.+.|+|+|-+.+ .... -+. .+......+..++++.+ ++||++.|+|.+++++.++++.| ||.|
T Consensus 638 ~~~~~~~~~l~~~g~d~i~vs~g~~~~~~~~~~~~~~~~~~~~~ik~~~---~~pv~~~G~i~~~~~a~~~l~~g~~D~v 714 (765)
T PRK08255 638 DDAVEIARAFKAAGADLIDVSSGQVSKDEKPVYGRMYQTPFADRIRNEA---GIATIAVGAISEADHVNSIIAAGRADLC 714 (765)
T ss_pred HHHHHHHHHHHhcCCcEEEeCCCCCCcCCCCCcCccccHHHHHHHHHHc---CCEEEEeCCCCCHHHHHHHHHcCCccee
Confidence 33 3456678999999853 1100 000 00011123445677766 79999999999999999999866 9999
Q ss_pred eeccccccCcc
Q 020013 193 CLGTRFVASEE 203 (332)
Q Consensus 193 ~~GT~fl~t~E 203 (332)
.+|..|+..++
T Consensus 715 ~~gR~~l~dP~ 725 (765)
T PRK08255 715 ALARPHLADPA 725 (765)
T ss_pred eEcHHHHhCcc
Confidence 99999998875
|
|
| >TIGR02129 hisA_euk phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase, eukaryotic type | Back alignment and domain information |
|---|
Probab=97.42 E-value=0.0097 Score=53.79 Aligned_cols=162 Identities=15% Similarity=0.152 Sum_probs=98.1
Q ss_pred HHHHHHHHhCCC--ceeecCCCCCCHHHHHHHHHHHHhhcCCcEEEEeecCCCCHHHHHHHHhcCCcEEEEcc---CCC-
Q 020013 25 PELVAAVANAGG--LGLLRAPDWEAPDYLRDLIRKTRSLTERPFGVGVVLAFPHNENIKAILSEKVAVLQVSW---GEY- 98 (332)
Q Consensus 25 ~~la~avs~aGg--lG~i~~~~~~~~e~~~~~i~~~r~~~~~p~gvnl~~~~~~~~~~~~~~~~~~~~I~~~~---g~~- 98 (332)
.++|..-.++|. +=++-.+. .+. +.++++.+.++.|+-+.=-+. .+.++.+++.|++.|.++- ..+
T Consensus 41 ~~~A~~~~~~Ga~~lHvVDLg~-~n~----~~i~~i~~~~~~~v~vGGGIr---~e~v~~~l~aGa~rVvIGS~av~~~~ 112 (253)
T TIGR02129 41 SYYAKLYKDDGVKGCHVIMLGP-NND----DAAKEALHAYPGGLQVGGGIN---DTNAQEWLDEGASHVIVTSWLFTKGK 112 (253)
T ss_pred HHHHHHHHHcCCCEEEEEECCC-CcH----HHHHHHHHhCCCCEEEeCCcC---HHHHHHHHHcCCCEEEECcHHHhCCC
Confidence 367888878775 44443321 233 344555444555665432222 3778889999999998862 111
Q ss_pred -cHHHHHHHH-hCC---C--------------EEEE----ecC--CHH-H-HHHHHHcCCCEEEEecCCCCcccCCCCch
Q 020013 99 -SEELVLEAH-SAG---V--------------KVVP----QVG--SFD-E-ARKAVNAGVDAIIVQGREAGGHVIGQDGL 151 (332)
Q Consensus 99 -~~~~i~~~~-~~g---~--------------~v~~----~v~--s~~-~-a~~a~~~g~D~ivv~G~eaGGh~~~~~~~ 151 (332)
.+++++.+. ..| + +|.. ..+ ++. + ++...+. +..|++...+--|...| ..
T Consensus 113 i~~~~~~~i~~~fG~~~IvvsiD~k~~~~g~~~V~~~GW~~~t~~~~~~e~~~~~~~~-~~~il~TdI~rDGtl~G--~d 189 (253)
T TIGR02129 113 FDLKRLKEIVSLVGKDRLIVDLSCRKTQDGRWIVAMNKWQTITDLELNAETLEELSKY-CDEFLIHAADVEGLCKG--ID 189 (253)
T ss_pred CCHHHHHHHHHHhCCCCEEEEEEEEEcCCCcEEEEECCCcccCCCChHHHHHHHHHhh-CCEEEEeeecccCcccc--CC
Confidence 134444432 222 1 1111 001 232 3 3444555 99999876544443212 44
Q ss_pred hhhHHHHHHHhCCCCCcEEeecCcCCHHHHHHHHHc--Ccceeeecccccc
Q 020013 152 ISLLPMVVDLIGDRDIPIIAAGGIVDARGYVAALSL--GAQGICLGTRFVA 200 (332)
Q Consensus 152 ~~ll~~i~~~~~~~~iPviaaGGI~~~~~v~~al~~--GA~gV~~GT~fl~ 200 (332)
++++.++.+.. ++|||++|||++.+|+.++-.+ |..++++|.++..
T Consensus 190 lel~~~l~~~~---~ipVIASGGv~s~eDi~~l~~~~~g~~~aIvG~Alf~ 237 (253)
T TIGR02129 190 EELVSKLGEWS---PIPITYAGGAKSIDDLDLVDELSKGKVDLTIGSALDI 237 (253)
T ss_pred HHHHHHHHhhC---CCCEEEECCCCCHHHHHHHHHhcCCCCcEEeeehHHH
Confidence 78888888876 8999999999999999988554 6778999988654
|
This enzyme acts in the biosynthesis of histidine and has been characterized in S. cerevisiae and Arabidopsis where it complements the E. coli HisA gene. In eukaryotes the gene is known as HIS6. In bacteria, this gene is found in Fibrobacter succinogenes, presumably due to lateral gene transfer from plants in the rumen gut. |
| >COG0107 HisF Imidazoleglycerol-phosphate synthase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.40 E-value=0.00066 Score=59.61 Aligned_cols=79 Identities=20% Similarity=0.379 Sum_probs=64.6
Q ss_pred HHHHHHHHHcCCCEEEEecCCCCcccCCCCchhhhHHHHHHHhCCCCCcEEeecCcCCHHHHHHHHHcCcceeeeccccc
Q 020013 120 FDEARKAVNAGVDAIIVQGREAGGHVIGQDGLISLLPMVVDLIGDRDIPIIAAGGIVDARGYVAALSLGAQGICLGTRFV 199 (332)
Q Consensus 120 ~~~a~~a~~~g~D~ivv~G~eaGGh~~~~~~~~~ll~~i~~~~~~~~iPviaaGGI~~~~~v~~al~~GA~gV~~GT~fl 199 (332)
++.|+...+.|+|=+++-...+--. +....+..+.++.+.+ .+|+-..|||.+.+|+.+.|.+|||-|-+.|+-+
T Consensus 33 VelA~~Y~e~GADElvFlDItAs~~--gr~~~~~vv~r~A~~v---fiPltVGGGI~s~eD~~~ll~aGADKVSINsaAv 107 (256)
T COG0107 33 VELAKRYNEEGADELVFLDITASSE--GRETMLDVVERVAEQV---FIPLTVGGGIRSVEDARKLLRAGADKVSINSAAV 107 (256)
T ss_pred HHHHHHHHHcCCCeEEEEecccccc--cchhHHHHHHHHHhhc---eeeeEecCCcCCHHHHHHHHHcCCCeeeeChhHh
Confidence 4667777889999998755433221 3446688888888877 7999999999999999999999999999999988
Q ss_pred cCcc
Q 020013 200 ASEE 203 (332)
Q Consensus 200 ~t~E 203 (332)
..+|
T Consensus 108 ~~p~ 111 (256)
T COG0107 108 KDPE 111 (256)
T ss_pred cChH
Confidence 7766
|
|
| >TIGR01182 eda Entner-Doudoroff aldolase | Back alignment and domain information |
|---|
Probab=97.39 E-value=0.0034 Score=55.06 Aligned_cols=100 Identities=25% Similarity=0.299 Sum_probs=71.7
Q ss_pred HHHHHHHhcCCcEEEEccCCC-cHHHHHHHHhC--CCEEE-EecCCHHHHHHHHHcCCCEEEEecCCCCcccCCCCchhh
Q 020013 78 ENIKAILSEKVAVLQVSWGEY-SEELVLEAHSA--GVKVV-PQVGSFDEARKAVNAGVDAIIVQGREAGGHVIGQDGLIS 153 (332)
Q Consensus 78 ~~~~~~~~~~~~~I~~~~g~~-~~~~i~~~~~~--g~~v~-~~v~s~~~a~~a~~~g~D~ivv~G~eaGGh~~~~~~~~~ 153 (332)
+..+.+.+.|++++.+.+..+ ..+.++.+++. ++.+. .+|.+.++++.+.++|+++++--+ ....
T Consensus 24 ~~~~al~~~Gi~~iEit~~t~~a~~~i~~l~~~~~~~~vGAGTVl~~~~a~~a~~aGA~FivsP~-----------~~~~ 92 (204)
T TIGR01182 24 PLAKALIEGGLRVLEVTLRTPVALDAIRLLRKEVPDALIGAGTVLNPEQLRQAVDAGAQFIVSPG-----------LTPE 92 (204)
T ss_pred HHHHHHHHcCCCEEEEeCCCccHHHHHHHHHHHCCCCEEEEEeCCCHHHHHHHHHcCCCEEECCC-----------CCHH
Confidence 446677888999999876442 23567777653 34444 568899999999999999996421 1123
Q ss_pred hHHHHHHHhCCCCCcEEeecCcCCHHHHHHHHHcCcceeee
Q 020013 154 LLPMVVDLIGDRDIPIIAAGGIVDARGYVAALSLGAQGICL 194 (332)
Q Consensus 154 ll~~i~~~~~~~~iPviaaGGI~~~~~v~~al~~GA~gV~~ 194 (332)
++....+ .++|++. |+.|+.++..++.+||+.|-+
T Consensus 93 v~~~~~~----~~i~~iP--G~~TptEi~~A~~~Ga~~vKl 127 (204)
T TIGR01182 93 LAKHAQD----HGIPIIP--GVATPSEIMLALELGITALKL 127 (204)
T ss_pred HHHHHHH----cCCcEEC--CCCCHHHHHHHHHCCCCEEEE
Confidence 3333332 2788888 888999999999999998764
|
2-deydro-3-deoxyphosphogluconate aldolase (EC 4.1.2.14) is an enzyme of the Entner-Doudoroff pathway. This aldolase has another function, 4-hydroxy-2-oxoglutarate aldolase (EC 4.1.3.16) shown experimentally in Escherichia coli and Pseudomonas putida |
| >TIGR00007 phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase | Back alignment and domain information |
|---|
Probab=97.39 E-value=0.0007 Score=60.49 Aligned_cols=87 Identities=23% Similarity=0.315 Sum_probs=64.0
Q ss_pred HHHHHHHHHcCCCEEEEecCCC--CcccCCCCchhhhHHHHHHHhCCCCCcEEeecCcCCHHHHHHHHHcCcceeeeccc
Q 020013 120 FDEARKAVNAGVDAIIVQGREA--GGHVIGQDGLISLLPMVVDLIGDRDIPIIAAGGIVDARGYVAALSLGAQGICLGTR 197 (332)
Q Consensus 120 ~~~a~~a~~~g~D~ivv~G~ea--GGh~~~~~~~~~ll~~i~~~~~~~~iPviaaGGI~~~~~v~~al~~GA~gV~~GT~ 197 (332)
.+.++...+.|+|.+.+---++ .|+ ...+.++.++.+.. ++|++..|||.+.+++..++.+||+.|++||.
T Consensus 31 ~~~a~~~~~~g~~~l~v~dl~~~~~g~----~~~~~~i~~i~~~~---~~pi~~ggGI~~~ed~~~~~~~Ga~~vvlgs~ 103 (230)
T TIGR00007 31 VEAAKKWEEEGAERIHVVDLDGAKEGG----PVNLPVIKKIVRET---GVPVQVGGGIRSLEDVEKLLDLGVDRVIIGTA 103 (230)
T ss_pred HHHHHHHHHcCCCEEEEEeCCccccCC----CCcHHHHHHHHHhc---CCCEEEeCCcCCHHHHHHHHHcCCCEEEEChH
Confidence 3455666678999888732221 122 13367788888776 79999999999999999999999999999999
Q ss_pred cccCccCCCCHHHHHHHhcCC
Q 020013 198 FVASEESYAHPEYKRKLVEMD 218 (332)
Q Consensus 198 fl~t~Es~~~~~~k~~~~~~~ 218 (332)
.+..+ +.+++...+..
T Consensus 104 ~l~d~-----~~~~~~~~~~g 119 (230)
T TIGR00007 104 AVENP-----DLVKELLKEYG 119 (230)
T ss_pred HhhCH-----HHHHHHHHHhC
Confidence 88542 45666655543
|
Examples of this enzyme in Actinobacteria have been found to be bifunctional, also possessing phosphoribosylanthranilate isomerase activity ; the trusted cutoff here has now been raised to 275.0 to exclude the bifunctional group, now represented by model TIGR01919. HisA from Lactococcus lactis was reported to be inactive (MEDLINE:93322317). |
| >cd02930 DCR_FMN 2,4-dienoyl-CoA reductase (DCR) FMN-binding domain | Back alignment and domain information |
|---|
Probab=97.38 E-value=0.0018 Score=61.88 Aligned_cols=77 Identities=18% Similarity=0.205 Sum_probs=54.3
Q ss_pred HHHHHcCCCEEEEec-CCCCccc-----CCCCchhhhHHHHHHHhCCCCCcEEeecCcCCHHHHHHHHHcC-cceeeecc
Q 020013 124 RKAVNAGVDAIIVQG-REAGGHV-----IGQDGLISLLPMVVDLIGDRDIPIIAAGGIVDARGYVAALSLG-AQGICLGT 196 (332)
Q Consensus 124 ~~a~~~g~D~ivv~G-~eaGGh~-----~~~~~~~~ll~~i~~~~~~~~iPviaaGGI~~~~~v~~al~~G-A~gV~~GT 196 (332)
+.+++.|+|+|-+.. ....-.. .+......+..++++.+ ++||++.|+|.+++++.++++.| +|.|++|.
T Consensus 231 ~~Le~~G~d~i~vs~g~~e~~~~~~~~~~~~~~~~~~~~~ik~~v---~iPVi~~G~i~~~~~a~~~i~~g~~D~V~~gR 307 (353)
T cd02930 231 KALEAAGADILNTGIGWHEARVPTIATSVPRGAFAWATAKLKRAV---DIPVIASNRINTPEVAERLLADGDADMVSMAR 307 (353)
T ss_pred HHHHHcCCCEEEeCCCcCCCCCccccccCCchhhHHHHHHHHHhC---CCCEEEcCCCCCHHHHHHHHHCCCCChhHhhH
Confidence 445678999998842 1100000 00001233456777766 79999999999999999999976 99999999
Q ss_pred ccccCcc
Q 020013 197 RFVASEE 203 (332)
Q Consensus 197 ~fl~t~E 203 (332)
.++..++
T Consensus 308 ~~l~dP~ 314 (353)
T cd02930 308 PFLADPD 314 (353)
T ss_pred HHHHCcc
Confidence 9998764
|
DCR in E. coli is an iron-sulfur flavoenzyme which contains FMN, FAD, and a 4Fe-4S cluster. It is also a monomer, unlike that of its eukaryotic counterparts which form homotetramers and lack the flavin and iron-sulfur cofactors. Metabolism of unsaturated fatty acids requires auxiliary enzymes in addition to those used in b-oxidation. After a given number of cycles through the b-oxidation pathway, those unsaturated fatty acyl-CoAs with double bonds at even-numbered carbon positions contain 2-trans, 4-cis double bonds that can not be modified by enoyl-CoA hydratase. DCR utilizes NADPH to remove the C4-C5 double bond. DCR can catalyze the reduction of both natural fatty acids with cis double bonds, as well as substrates containing trans double bonds. The reaction is initiated by hybrid transfer from NADPH to FAD, which in turn transfers electrons, one at a time, to FMN via the 4Fe-4S cluster. The fully reduced FMN provi |
| >PRK07998 gatY putative fructose-1,6-bisphosphate aldolase; Reviewed | Back alignment and domain information |
|---|
Probab=97.35 E-value=0.018 Score=53.09 Aligned_cols=150 Identities=16% Similarity=0.191 Sum_probs=99.2
Q ss_pred CHHHHHHHHHHHHhhcCCcEEEEeecCCCCHHHHHHHHhcCCcEEEEccCCCcH--------HHHHHHHhCCCEEE---E
Q 020013 47 APDYLRDLIRKTRSLTERPFGVGVVLAFPHNENIKAILSEKVAVLQVSWGEYSE--------ELVLEAHSAGVKVV---P 115 (332)
Q Consensus 47 ~~e~~~~~i~~~r~~~~~p~gvnl~~~~~~~~~~~~~~~~~~~~I~~~~g~~~~--------~~i~~~~~~g~~v~---~ 115 (332)
..+.+...+..+.+..+.|+.+++=-- .+.+.+..+++.|.+.|-+.....|. ++++.++..|+.|= .
T Consensus 58 g~~~~~~~~~~~A~~~~vPV~lHLDH~-~~~e~i~~Ai~~GftSVM~DgS~l~~eeNi~~T~~vve~Ah~~gv~VEaElG 136 (283)
T PRK07998 58 GYDYIYEIVKRHADKMDVPVSLHLDHG-KTFEDVKQAVRAGFTSVMIDGAALPFEENIAFTKEAVDFAKSYGVPVEAELG 136 (283)
T ss_pred CHHHHHHHHHHHHHHCCCCEEEECcCC-CCHHHHHHHHHcCCCEEEEeCCCCCHHHHHHHHHHHHHHHHHcCCEEEEEec
Confidence 344555555555555567877775322 23567778888999988775333232 34556667787651 1
Q ss_pred e--------------cCCHHHHHHHH-HcCCCEEEE-ecCCCCcccCCCCchhhhHHHHHHHhCCCCCcEEeecCcCCH-
Q 020013 116 Q--------------VGSFDEARKAV-NAGVDAIIV-QGREAGGHVIGQDGLISLLPMVVDLIGDRDIPIIAAGGIVDA- 178 (332)
Q Consensus 116 ~--------------v~s~~~a~~a~-~~g~D~ivv-~G~eaGGh~~~~~~~~~ll~~i~~~~~~~~iPviaaGGI~~~- 178 (332)
. .++++++.+.. +.|+|.+-+ .|.-=|-.. ++.-.+.++.++.+.+ ++|++.-||=+.+
T Consensus 137 ~vgg~ed~~~~~~~~~T~pe~a~~Fv~~TgvD~LAvaiGt~HG~Y~-~p~l~~~~l~~I~~~~---~vPLVlHGgSG~~~ 212 (283)
T PRK07998 137 AILGKEDDHVSEADCKTEPEKVKDFVERTGCDMLAVSIGNVHGLED-IPRIDIPLLKRIAEVS---PVPLVIHGGSGIPP 212 (283)
T ss_pred cCCCccccccccccccCCHHHHHHHHHHhCcCeeehhccccccCCC-CCCcCHHHHHHHHhhC---CCCEEEeCCCCCCH
Confidence 1 35788887765 579998876 233111111 2223478899998887 7999998876665
Q ss_pred HHHHHHHHcCcceeeeccccccC
Q 020013 179 RGYVAALSLGAQGICLGTRFVAS 201 (332)
Q Consensus 179 ~~v~~al~~GA~gV~~GT~fl~t 201 (332)
+++.+++.+|...|-++|.+..+
T Consensus 213 e~~~~ai~~Gi~KiNi~Tel~~a 235 (283)
T PRK07998 213 EILRSFVNYKVAKVNIASDLRKA 235 (283)
T ss_pred HHHHHHHHcCCcEEEECHHHHHH
Confidence 77899999999999999986543
|
|
| >PRK08227 autoinducer 2 aldolase; Validated | Back alignment and domain information |
|---|
Probab=97.34 E-value=0.0021 Score=58.52 Aligned_cols=169 Identities=20% Similarity=0.204 Sum_probs=98.8
Q ss_pred CccceecCCCCCCCCcH-HHHHHHHhCCCceeecCCCCCCHHHHHHHHHHHHhhcCCcEEEEeecC-----CCC----HH
Q 020013 9 FEYGIVQAPLGPDISGP-ELVAAVANAGGLGLLRAPDWEAPDYLRDLIRKTRSLTERPFGVGVVLA-----FPH----NE 78 (332)
Q Consensus 9 ~~~Pii~apM~~g~s~~-~la~avs~aGglG~i~~~~~~~~e~~~~~i~~~r~~~~~p~gvnl~~~-----~~~----~~ 78 (332)
+++-+..+|+. |+.++ +....+.. | ...+.. +...++.. .....+.|+-+.+-.. .+. ..
T Consensus 29 ~DHG~~~Gp~~-gl~~~~~~~~~i~~-~-~da~~~----~~G~~~~~---~~~~~~~~lil~ls~~t~~~~~~~~~~l~~ 98 (264)
T PRK08227 29 FDHGYFQGPTT-GLERIDINIAPLFP-Y-ADVLMC----TRGILRSV---VPPATNKPVVLRASGGNSILKELSNEAVAV 98 (264)
T ss_pred CCCccccCCCc-cccChHHHHHHHhh-c-CCEEEe----ChhHHHhc---ccccCCCcEEEEEcCCCCCCCCCCccccee
Confidence 56777788886 56543 34444544 4 333322 22222221 1112344555443321 111 12
Q ss_pred HHHHHHhcCCcEEEEc--cCCCcH--------HHHHHHHhCCCEEEEecC------CHH-----HHHHHHHcCCCEEEEe
Q 020013 79 NIKAILSEKVAVLQVS--WGEYSE--------ELVLEAHSAGVKVVPQVG------SFD-----EARKAVNAGVDAIIVQ 137 (332)
Q Consensus 79 ~~~~~~~~~~~~I~~~--~g~~~~--------~~i~~~~~~g~~v~~~v~------s~~-----~a~~a~~~g~D~ivv~ 137 (332)
.++.++..|+|.|.++ .|.+.+ ++++.+++.|++++.... +.. .++.+.+.|+|+|.+.
T Consensus 99 sVeeAvrlGAdAV~~~v~~Gs~~E~~~l~~l~~v~~ea~~~G~Plla~~prG~~~~~~~~~ia~aaRiaaELGADiVK~~ 178 (264)
T PRK08227 99 DMEDAVRLNACAVAAQVFIGSEYEHQSIKNIIQLVDAGLRYGMPVMAVTAVGKDMVRDARYFSLATRIAAEMGAQIIKTY 178 (264)
T ss_pred cHHHHHHCCCCEEEEEEecCCHHHHHHHHHHHHHHHHHHHhCCcEEEEecCCCCcCchHHHHHHHHHHHHHHcCCEEecC
Confidence 3677889999998765 454221 234556778999876321 211 2456788999999873
Q ss_pred cCCCCcccCCCCchhhhHHHHHHHhCCCCCcEEeecCcCCH-H----HHHHHHHcCcceeeeccccccCc
Q 020013 138 GREAGGHVIGQDGLISLLPMVVDLIGDRDIPIIAAGGIVDA-R----GYVAALSLGAQGICLGTRFVASE 202 (332)
Q Consensus 138 G~eaGGh~~~~~~~~~ll~~i~~~~~~~~iPviaaGGI~~~-~----~v~~al~~GA~gV~~GT~fl~t~ 202 (332)
-+ . ..+.++.+.. .+||+.+||=... + .+..++..||.||.+|.-.+-.+
T Consensus 179 y~----------~--~~f~~vv~a~---~vPVviaGG~k~~~~~~L~~v~~ai~aGa~Gv~~GRNIfQ~~ 233 (264)
T PRK08227 179 YV----------E--EGFERITAGC---PVPIVIAGGKKLPERDALEMCYQAIDEGASGVDMGRNIFQSE 233 (264)
T ss_pred CC----------H--HHHHHHHHcC---CCcEEEeCCCCCCHHHHHHHHHHHHHcCCceeeechhhhccC
Confidence 21 1 3455666655 7999999998642 2 24567789999999998877763
|
|
| >COG1902 NemA NADH:flavin oxidoreductases, Old Yellow Enzyme family [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=97.34 E-value=0.016 Score=55.41 Aligned_cols=78 Identities=29% Similarity=0.433 Sum_probs=53.6
Q ss_pred HHHHHHcC-CCEEEEecCCC--CcccCCCC--chhhhHHHHHHHhCCCCCcEEeecCcCCHHHHHHHHHcC-cceeeecc
Q 020013 123 ARKAVNAG-VDAIIVQGREA--GGHVIGQD--GLISLLPMVVDLIGDRDIPIIAAGGIVDARGYVAALSLG-AQGICLGT 196 (332)
Q Consensus 123 a~~a~~~g-~D~ivv~G~ea--GGh~~~~~--~~~~ll~~i~~~~~~~~iPviaaGGI~~~~~v~~al~~G-A~gV~~GT 196 (332)
++...+.| +|+|-+.+... .+...... ....+...++... .+|+|++|+|.+++.+.++++-| ||-|.||+
T Consensus 243 a~~L~~~G~~d~i~vs~~~~~~~~~~~~~~~~~~~~~a~~i~~~~---~~pvi~~G~i~~~~~Ae~~l~~g~aDlVa~gR 319 (363)
T COG1902 243 AKALEEAGLVDYIHVSEGGYERGGTITVSGPGYQVEFAARIKKAV---RIPVIAVGGINDPEQAEEILASGRADLVAMGR 319 (363)
T ss_pred HHHHHhcCCccEEEeecccccCCCCccccccchhHHHHHHHHHhc---CCCEEEeCCCCCHHHHHHHHHcCCCCEEEech
Confidence 34456789 79998855321 22110010 1122333455555 69999999999999999999998 99999999
Q ss_pred ccccCcc
Q 020013 197 RFVASEE 203 (332)
Q Consensus 197 ~fl~t~E 203 (332)
.|+..++
T Consensus 320 ~~ladP~ 326 (363)
T COG1902 320 PFLADPD 326 (363)
T ss_pred hhhcCcc
Confidence 9997644
|
|
| >cd00959 DeoC 2-deoxyribose-5-phosphate aldolase (DERA) of the DeoC family | Back alignment and domain information |
|---|
Probab=97.33 E-value=0.026 Score=49.48 Aligned_cols=107 Identities=21% Similarity=0.362 Sum_probs=63.9
Q ss_pred HHHHHHhcCCcEEEEc--cCC----CcHHHH---HHHHh--CCCEE--EEecC--CHHH----HHHHHHcCCCEEEE-ec
Q 020013 79 NIKAILSEKVAVLQVS--WGE----YSEELV---LEAHS--AGVKV--VPQVG--SFDE----ARKAVNAGVDAIIV-QG 138 (332)
Q Consensus 79 ~~~~~~~~~~~~I~~~--~g~----~~~~~i---~~~~~--~g~~v--~~~v~--s~~~----a~~a~~~g~D~ivv-~G 138 (332)
.++.+++.|+|.|.+. +|. ....+. ..+.+ .|+++ +.... +.++ ++.+.++|+|+|.. .|
T Consensus 74 eve~A~~~GAdevdvv~~~g~~~~~~~~~~~~ei~~v~~~~~g~~lkvI~e~~~l~~~~i~~a~ria~e~GaD~IKTsTG 153 (203)
T cd00959 74 EAREAIADGADEIDMVINIGALKSGDYEAVYEEIAAVVEACGGAPLKVILETGLLTDEEIIKACEIAIEAGADFIKTSTG 153 (203)
T ss_pred HHHHHHHcCCCEEEEeecHHHHhCCCHHHHHHHHHHHHHhcCCCeEEEEEecCCCCHHHHHHHHHHHHHhCCCEEEcCCC
Confidence 3667788899998764 231 112222 22222 24443 33322 3333 34567899999988 34
Q ss_pred CCCCcccCCCCchhhhHHHHHHHhCCCCCcEEeecCcCCHHHHHHHHHcCccee
Q 020013 139 REAGGHVIGQDGLISLLPMVVDLIGDRDIPIIAAGGIVDARGYVAALSLGAQGI 192 (332)
Q Consensus 139 ~eaGGh~~~~~~~~~ll~~i~~~~~~~~iPviaaGGI~~~~~v~~al~~GA~gV 192 (332)
+..+| .+..-+..+.+.++ .++||.++|||.|.+++.+++.+||+-+
T Consensus 154 ~~~~~------at~~~v~~~~~~~~-~~v~ik~aGGikt~~~~l~~~~~g~~ri 200 (203)
T cd00959 154 FGPGG------ATVEDVKLMKEAVG-GRVGVKAAGGIRTLEDALAMIEAGATRI 200 (203)
T ss_pred CCCCC------CCHHHHHHHHHHhC-CCceEEEeCCCCCHHHHHHHHHhChhhc
Confidence 43222 22333333333332 2699999999999999999999998754
|
DERA belongs to the class I aldolases and catalyzes a reversible aldol reaction between acetaldehyde and glyceraldehyde 3-phosphate to generate 2-deoxyribose 5-phosphate. DERA is unique in catalyzing the aldol reaction between two aldehydes, and its broad substrate specificity confers considerable utility as a biocatalyst, offering an environmentally benign alternative to chiral transition metal catalysis of the asymmetric aldol reaction. |
| >PRK13397 3-deoxy-7-phosphoheptulonate synthase; Provisional | Back alignment and domain information |
|---|
Probab=97.30 E-value=0.078 Score=47.90 Aligned_cols=173 Identities=17% Similarity=0.222 Sum_probs=103.8
Q ss_pred ceecCCCCCCCCcHHHHHHHHhC---CCceeecCCCCC-----------CHHHHHHHHHHHHhhcCCcEEEEeecCCCCH
Q 020013 12 GIVQAPLGPDISGPELVAAVANA---GGLGLLRAPDWE-----------APDYLRDLIRKTRSLTERPFGVGVVLAFPHN 77 (332)
Q Consensus 12 Pii~apM~~g~s~~~la~avs~a---GglG~i~~~~~~-----------~~e~~~~~i~~~r~~~~~p~gvnl~~~~~~~ 77 (332)
-+|.||-. +-+.+.+..+++. -|+.++..+.|. ..+. .+++.+.++.++.|+-.-++ +.
T Consensus 17 ~~iaGPC~--vEs~e~~~~~a~~~~~~g~~~~r~g~~kpRts~~sf~G~G~~g-l~~L~~~~~~~Gl~~~Tev~----d~ 89 (250)
T PRK13397 17 NFIVGPCS--IESYDHIRLAASSAKKLGYNYFRGGAYKPRTSAASFQGLGLQG-IRYLHEVCQEFGLLSVSEIM----SE 89 (250)
T ss_pred cEEeccCc--cCCHHHHHHHHHHHHHcCCCEEEecccCCCCCCcccCCCCHHH-HHHHHHHHHHcCCCEEEeeC----CH
Confidence 35556664 6676666555532 245666443221 1232 34455555555666655444 35
Q ss_pred HHHHHHHhcCCcEEEEccCC-CcHHHHHHHHhCCCEEEEecC---CHHHHHHHH----HcCC-CEEEEe-cCCCCcccCC
Q 020013 78 ENIKAILSEKVAVLQVSWGE-YSEELVLEAHSAGVKVVPQVG---SFDEARKAV----NAGV-DAIIVQ-GREAGGHVIG 147 (332)
Q Consensus 78 ~~~~~~~~~~~~~I~~~~g~-~~~~~i~~~~~~g~~v~~~v~---s~~~a~~a~----~~g~-D~ivv~-G~eaGGh~~~ 147 (332)
..++.+.+ .+|++++.... ...++++.+-+.|.+|+.+-+ +++|...+. +.|. +.++++ |.. +....
T Consensus 90 ~~v~~~~e-~vdilqIgs~~~~n~~LL~~va~tgkPVilk~G~~~t~~e~~~A~e~i~~~Gn~~i~L~eRg~~--~Y~~~ 166 (250)
T PRK13397 90 RQLEEAYD-YLDVIQVGARNMQNFEFLKTLSHIDKPILFKRGLMATIEEYLGALSYLQDTGKSNIILCERGVR--GYDVE 166 (250)
T ss_pred HHHHHHHh-cCCEEEECcccccCHHHHHHHHccCCeEEEeCCCCCCHHHHHHHHHHHHHcCCCeEEEEccccC--CCCCc
Confidence 67888777 59999997443 234678888788999987654 677665543 4566 566666 541 11101
Q ss_pred -C-CchhhhHHHHHHHhCCCCCcEEee----cCcCC--HHHHHHHHHcCcceeeeccc
Q 020013 148 -Q-DGLISLLPMVVDLIGDRDIPIIAA----GGIVD--ARGYVAALSLGAQGICLGTR 197 (332)
Q Consensus 148 -~-~~~~~ll~~i~~~~~~~~iPviaa----GGI~~--~~~v~~al~~GA~gV~~GT~ 197 (332)
. ...+..++.+++.. ++||+.. +|..+ ..-..+++++||||+++=+.
T Consensus 167 ~~n~~dl~ai~~lk~~~---~lPVivd~SHs~G~r~~v~~~a~AAvA~GAdGl~IE~H 221 (250)
T PRK13397 167 TRNMLDIMAVPIIQQKT---DLPIIVDVSHSTGRRDLLLPAAKIAKAVGANGIMMEVH 221 (250)
T ss_pred cccccCHHHHHHHHHHh---CCCeEECCCCCCcccchHHHHHHHHHHhCCCEEEEEec
Confidence 1 23456677777665 7999885 44322 13356788999999998544
|
|
| >cd04747 OYE_like_5_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 5 | Back alignment and domain information |
|---|
Probab=97.29 E-value=0.0049 Score=58.92 Aligned_cols=116 Identities=17% Similarity=0.235 Sum_probs=75.4
Q ss_pred HHHhcCCcEEEEccCC---------C-------------------cHHHHHHHHhC-C--CEEEEecC------------
Q 020013 82 AILSEKVAVLQVSWGE---------Y-------------------SEELVLEAHSA-G--VKVVPQVG------------ 118 (332)
Q Consensus 82 ~~~~~~~~~I~~~~g~---------~-------------------~~~~i~~~~~~-g--~~v~~~v~------------ 118 (332)
.+.++|.|.|.+|.+. + ..++++.+++. | .+|...++
T Consensus 152 ~a~~aGfDgVeih~ahGyLl~qFLSp~~N~RtDeYGGslenR~Rf~~eii~air~~vG~d~~v~vRis~~~~~~~~~~~g 231 (361)
T cd04747 152 DARRLGFDGIELHGAHGYLIDQFFWAGTNRRADGYGGSLAARSRFAAEVVKAIRAAVGPDFPIILRFSQWKQQDYTARLA 231 (361)
T ss_pred HHHHcCCCEEEEecccchHHHHhcCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHcCCCCeEEEEECcccccccccCCC
Confidence 4566899999988433 1 12456666663 3 45554332
Q ss_pred -CHHHHH----HHHHcCCCEEEEecCCCCcccCC--CCchhhhHHHHHHHhCCCCCcEEeecCc----------------
Q 020013 119 -SFDEAR----KAVNAGVDAIIVQGREAGGHVIG--QDGLISLLPMVVDLIGDRDIPIIAAGGI---------------- 175 (332)
Q Consensus 119 -s~~~a~----~a~~~g~D~ivv~G~eaGGh~~~--~~~~~~ll~~i~~~~~~~~iPviaaGGI---------------- 175 (332)
+.++.. .+.+.|+|+|=+... ++... ....+.+...+++.+ ++||++.|||
T Consensus 232 ~~~~e~~~~~~~l~~~gvd~i~vs~g---~~~~~~~~~~~~~~~~~~k~~~---~~pv~~~G~i~~~~~~~~~~~~~~~~ 305 (361)
T cd04747 232 DTPDELEALLAPLVDAGVDIFHCSTR---RFWEPEFEGSELNLAGWTKKLT---GLPTITVGSVGLDGDFIGAFAGDEGA 305 (361)
T ss_pred CCHHHHHHHHHHHHHcCCCEEEecCC---CccCCCcCccchhHHHHHHHHc---CCCEEEECCccccccccccccccccc
Confidence 333433 346789999866431 11100 111244556677766 7999999999
Q ss_pred --CCHHHHHHHHHcC-cceeeeccccccCcc
Q 020013 176 --VDARGYVAALSLG-AQGICLGTRFVASEE 203 (332)
Q Consensus 176 --~~~~~v~~al~~G-A~gV~~GT~fl~t~E 203 (332)
.+++++.++++-| ||.|.+|+.++..++
T Consensus 306 ~~~~~~~a~~~l~~g~~D~V~~gR~~iadP~ 336 (361)
T cd04747 306 SPASLDRLLERLERGEFDLVAVGRALLSDPA 336 (361)
T ss_pred ccCCHHHHHHHHHCCCCCeehhhHHHHhCcH
Confidence 5889999999976 999999999997653
|
Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase. |
| >COG1646 Predicted phosphate-binding enzymes, TIM-barrel fold [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.26 E-value=0.0045 Score=54.60 Aligned_cols=174 Identities=18% Similarity=0.224 Sum_probs=93.0
Q ss_pred cceecCCCCCCCCcHHHHHHHHhCCCceeecCCCC-CCHHHHHHHHHHHHhhcCCcEEEEeecCCCCHHHHHHHHhcCCc
Q 020013 11 YGIVQAPLGPDISGPELVAAVANAGGLGLLRAPDW-EAPDYLRDLIRKTRSLTERPFGVGVVLAFPHNENIKAILSEKVA 89 (332)
Q Consensus 11 ~Pii~apM~~g~s~~~la~avs~aGglG~i~~~~~-~~~e~~~~~i~~~r~~~~~p~gvnl~~~~~~~~~~~~~~~~~~~ 89 (332)
|=...+|-- .--..+.+.+++++|-=+++..++. .+.+.+.+.++++|+.++.|+-. +...+ .. +...+|
T Consensus 18 H~tliDP~k-~~~~~ei~~~~~~~GTDaImIGGS~gvt~~~~~~~v~~ik~~~~lPvil--fP~~~--~~----is~~aD 88 (240)
T COG1646 18 HLTLIDPDK-TEEADEIAEAAAEAGTDAIMIGGSDGVTEENVDNVVEAIKERTDLPVIL--FPGSP--SG----ISPYAD 88 (240)
T ss_pred EEEEeCccc-ccccHHHHHHHHHcCCCEEEECCcccccHHHHHHHHHHHHhhcCCCEEE--ecCCh--hc----cCccCC
Confidence 334445543 1335678888989987666654322 45677889999999777777543 22111 11 112456
Q ss_pred EEEEcc---CCCcH-------HHHHHHHhCCCEEE-------------EecC-------CHHHHHHH-----HHcCCCEE
Q 020013 90 VLQVSW---GEYSE-------ELVLEAHSAGVKVV-------------PQVG-------SFDEARKA-----VNAGVDAI 134 (332)
Q Consensus 90 ~I~~~~---g~~~~-------~~i~~~~~~g~~v~-------------~~v~-------s~~~a~~a-----~~~g~D~i 134 (332)
.+.+.- ...+. +-...+.+.+..++ ..++ +.++...+ .-.|-..+
T Consensus 89 avff~svLNS~n~~~i~gaq~~~a~~~~~~~~e~i~~gYiV~~p~~~va~v~~A~~ip~~~~~iaa~y~la~~~~g~~~~ 168 (240)
T COG1646 89 AVFFPSVLNSDNPYWIVGAQVEGAKLVGKLGLEVIPEGYIVVNPDGTVAWVGKAKPIPLDKEDIAAYYALAEKYLGMPVV 168 (240)
T ss_pred eEEEEEEecCCCcccccchhhhhhHHHHhhhheecceEEEEECCCCceeeecccccCCCCcHHHHHHHHHHHHHhCCeEE
Confidence 554320 11111 11111111121111 0111 12222211 12466666
Q ss_pred EEecCCCCcccCCCCchhhhHHHHHHHhCCCCCcEEeecCcCCHHHHHHHHHcCcceeeeccccccCc
Q 020013 135 IVQGREAGGHVIGQDGLISLLPMVVDLIGDRDIPIIAAGGIVDARGYVAALSLGAQGICLGTRFVASE 202 (332)
Q Consensus 135 vv~G~eaGGh~~~~~~~~~ll~~i~~~~~~~~iPviaaGGI~~~~~v~~al~~GA~gV~~GT~fl~t~ 202 (332)
-+ |+||.- +.......+.++.+ ..|+|..|||.+++.+.+...+|||.+++||.+--+.
T Consensus 169 Yl---Eagsga-~~Pv~~e~v~~v~~-----~~~LivGGGIrs~E~A~~~a~agAD~IVtG~iiee~~ 227 (240)
T COG1646 169 YL---EAGSGA-GDPVPVEMVSRVLS-----DTPLIVGGGIRSPEQAREMAEAGADTIVTGTIIEEDP 227 (240)
T ss_pred EE---EecCCC-CCCcCHHHHHHhhc-----cceEEEcCCcCCHHHHHHHHHcCCCEEEECceeecCH
Confidence 66 444433 22222333333322 4699999999999999999999999999999865443
|
|
| >TIGR01306 GMP_reduct_2 guanosine monophosphate reductase, bacterial | Back alignment and domain information |
|---|
Probab=97.22 E-value=0.005 Score=57.65 Aligned_cols=123 Identities=11% Similarity=0.118 Sum_probs=80.5
Q ss_pred CCcEEEEeecCCCCHHHHHHHHhcCCcEEEEccCCCcHHHHHHHHh---CCCEEEEecC-CHH---HHHHHHHcC--CCE
Q 020013 63 ERPFGVGVVLAFPHNENIKAILSEKVAVLQVSWGEYSEELVLEAHS---AGVKVVPQVG-SFD---EARKAVNAG--VDA 133 (332)
Q Consensus 63 ~~p~gvnl~~~~~~~~~~~~~~~~~~~~I~~~~g~~~~~~i~~~~~---~g~~v~~~v~-s~~---~a~~a~~~g--~D~ 133 (332)
..||-+|=|...-+.+....+.+.|.-.+..-+ +++++.+.+++ .+..+...++ +.+ .+....++| +|+
T Consensus 34 ~~P~~inAM~t~in~~LA~~a~~~G~~~i~hK~--~~E~~~sfvrk~k~~~L~v~~SvG~t~e~~~r~~~lv~a~~~~d~ 111 (321)
T TIGR01306 34 KLPVVPANMQTIIDEKLAEQLAENGYFYIMHRF--DEESRIPFIKDMQERGLFASISVGVKACEYEFVTQLAEEALTPEY 111 (321)
T ss_pred cCcEEeeccchhhhHHHHHHHHHcCCEEEEecC--CHHHHHHHHHhccccccEEEEEcCCCHHHHHHHHHHHhcCCCCCE
Confidence 457777766432234445555566655444332 35555554444 3555555554 333 344556778 799
Q ss_pred EEEecCCCCcccCCCCchhhhHHHHHHHhCCCCCcEEeecCcCCHHHHHHHHHcCcceeeec
Q 020013 134 IIVQGREAGGHVIGQDGLISLLPMVVDLIGDRDIPIIAAGGIVDARGYVAALSLGAQGICLG 195 (332)
Q Consensus 134 ivv~G~eaGGh~~~~~~~~~ll~~i~~~~~~~~iPviaaGGI~~~~~v~~al~~GA~gV~~G 195 (332)
|+++-. =||. ...+..++.+++.. +.|.+..|.|.+++++..++.+|||+|.+|
T Consensus 112 i~~D~a--hg~s---~~~~~~i~~i~~~~---p~~~vi~GnV~t~e~a~~l~~aGad~I~V~ 165 (321)
T TIGR01306 112 ITIDIA--HGHS---NSVINMIKHIKTHL---PDSFVIAGNVGTPEAVRELENAGADATKVG 165 (321)
T ss_pred EEEeCc--cCch---HHHHHHHHHHHHhC---CCCEEEEecCCCHHHHHHHHHcCcCEEEEC
Confidence 999643 2453 34567788888766 578899999999999999999999999988
|
A deep split separates two families of GMP reductase. The other (TIGR01305) is found in eukaryotic and some proteobacterial lineages, including E. coli, while this family is found in a variety of bacterial lineages. |
| >TIGR00126 deoC deoxyribose-phosphate aldolase | Back alignment and domain information |
|---|
Probab=97.20 E-value=0.04 Score=48.63 Aligned_cols=108 Identities=26% Similarity=0.403 Sum_probs=64.5
Q ss_pred HHHHHHhcCCcEEEEc--cCC----CcHHH---HHHHHh--CCC--EEEEecC--CHHHH----HHHHHcCCCEEEE-ec
Q 020013 79 NIKAILSEKVAVLQVS--WGE----YSEEL---VLEAHS--AGV--KVVPQVG--SFDEA----RKAVNAGVDAIIV-QG 138 (332)
Q Consensus 79 ~~~~~~~~~~~~I~~~--~g~----~~~~~---i~~~~~--~g~--~v~~~v~--s~~~a----~~a~~~g~D~ivv-~G 138 (332)
..+.+++.|+|-|.+. +|. ....+ +..+.+ .|+ +++.... +.++. +.+.++|+|+|.. .|
T Consensus 75 E~~~Av~~GAdEiDvv~n~g~l~~g~~~~v~~ei~~i~~~~~g~~lKvIlE~~~L~~~ei~~a~~ia~eaGADfvKTsTG 154 (211)
T TIGR00126 75 ETKEAIKYGADEVDMVINIGALKDGNEEVVYDDIRAVVEACAGVLLKVIIETGLLTDEEIRKACEICIDAGADFVKTSTG 154 (211)
T ss_pred HHHHHHHcCCCEEEeecchHhhhCCcHHHHHHHHHHHHHHcCCCeEEEEEecCCCCHHHHHHHHHHHHHhCCCEEEeCCC
Confidence 3556778899887653 221 11222 233333 144 4444332 33332 3467899999987 35
Q ss_pred CCCCcccCCCCchhhhHHHHHHHhCCCCCcEEeecCcCCHHHHHHHHHcCcceee
Q 020013 139 REAGGHVIGQDGLISLLPMVVDLIGDRDIPIIAAGGIVDARGYVAALSLGAQGIC 193 (332)
Q Consensus 139 ~eaGGh~~~~~~~~~ll~~i~~~~~~~~iPviaaGGI~~~~~v~~al~~GA~gV~ 193 (332)
+..+| .+..-+..+++.++. ++||-++|||.|.+++.+++.+||+-+-
T Consensus 155 f~~~g------at~~dv~~m~~~v~~-~v~IKaaGGirt~~~a~~~i~aGa~riG 202 (211)
T TIGR00126 155 FGAGG------ATVEDVRLMRNTVGD-TIGVKASGGVRTAEDAIAMIEAGASRIG 202 (211)
T ss_pred CCCCC------CCHHHHHHHHHHhcc-CCeEEEeCCCCCHHHHHHHHHHhhHHhC
Confidence 53333 223333344444432 6999999999999999999999988553
|
Deoxyribose-phosphate aldolase is involved in the catabolism of nucleotides and deoxyriibonucleotides. The catalytic process is as follows: 2-deoxy-D-ribose 5-phosphate = D-glyceraldehyde 3-phosphate + acetaldehyde. It is found in both gram-postive and gram-negative bacteria. |
| >PRK06852 aldolase; Validated | Back alignment and domain information |
|---|
Probab=97.18 E-value=0.021 Score=53.05 Aligned_cols=178 Identities=19% Similarity=0.208 Sum_probs=101.1
Q ss_pred CccceecCC--------CCCCCCcHH-HHHHHHhCCCceeecCCCCCCHHHHHHHHHHHHhhcCCcEEEEeecC------
Q 020013 9 FEYGIVQAP--------LGPDISGPE-LVAAVANAGGLGLLRAPDWEAPDYLRDLIRKTRSLTERPFGVGVVLA------ 73 (332)
Q Consensus 9 ~~~Pii~ap--------M~~g~s~~~-la~avs~aGglG~i~~~~~~~~e~~~~~i~~~r~~~~~p~gvnl~~~------ 73 (332)
+++-+..+| +. |..+|+ +...+.++| .+.+.. +...++... ....+.|+-+.+-..
T Consensus 38 ~DHG~~~Gp~~~~~~~~~~-gl~dp~~~i~~~~~~g-~dav~~----~~G~l~~~~---~~~~~~~lIlkl~~~t~l~~~ 108 (304)
T PRK06852 38 GDQKIEHLNDDFYGEGIAK-DDADPEHLFRIASKAK-IGVFAT----QLGLIARYG---MDYPDVPYLVKLNSKTNLVKT 108 (304)
T ss_pred ccCCcccCCcccccccCCc-ccCCHHHHHHHHHhcC-CCEEEe----CHHHHHhhc---cccCCCcEEEEECCCCCcCCc
Confidence 566677777 76 688887 555555554 555433 122222211 112245555443221
Q ss_pred ---CCCH---HHHHHHHhcC------CcEEEEc--cCCCcH--------HHHHHHHhCCCEEEEec-------C---CHH
Q 020013 74 ---FPHN---ENIKAILSEK------VAVLQVS--WGEYSE--------ELVLEAHSAGVKVVPQV-------G---SFD 121 (332)
Q Consensus 74 ---~~~~---~~~~~~~~~~------~~~I~~~--~g~~~~--------~~i~~~~~~g~~v~~~v-------~---s~~ 121 (332)
++.. ..++.++..| +|.|.++ .|...+ ++++.+++.|++++..+ . +++
T Consensus 109 ~~~~p~~~l~~sVeeAvrlG~~~~~~AdAV~v~v~~Gs~~E~~ml~~l~~v~~ea~~~GlPll~~~yprG~~i~~~~~~~ 188 (304)
T PRK06852 109 SQRDPLSRQLLDVEQVVEFKENSGLNILGVGYTIYLGSEYESEMLSEAAQIIYEAHKHGLIAVLWIYPRGKAVKDEKDPH 188 (304)
T ss_pred ccCCccccceecHHHHHhcCCccCCCceEEEEEEecCCHHHHHHHHHHHHHHHHHHHhCCcEEEEeeccCcccCCCccHH
Confidence 1111 1256777777 7787654 454222 23455677899987532 1 112
Q ss_pred ----HHHHHHHcCCCEEEEecCCCCcccCCCCchhhhHHHHHHHhCCCCCcEEeecCcCCH-H----HHHHHHH-cCcce
Q 020013 122 ----EARKAVNAGVDAIIVQGREAGGHVIGQDGLISLLPMVVDLIGDRDIPIIAAGGIVDA-R----GYVAALS-LGAQG 191 (332)
Q Consensus 122 ----~a~~a~~~g~D~ivv~G~eaGGh~~~~~~~~~ll~~i~~~~~~~~iPviaaGGI~~~-~----~v~~al~-~GA~g 191 (332)
.++.+.+.|+|+|.+.-+.. |.. .....+.++.+... .+||+.+||=... + .+.+++. .||.|
T Consensus 189 ~ia~aaRiaaELGADIVKv~y~~~--~~~---g~~e~f~~vv~~~g--~vpVviaGG~k~~~~e~L~~v~~ai~~aGa~G 261 (304)
T PRK06852 189 LIAGAAGVAACLGADFVKVNYPKK--EGA---NPAELFKEAVLAAG--RTKVVCAGGSSTDPEEFLKQLYEQIHISGASG 261 (304)
T ss_pred HHHHHHHHHHHHcCCEEEecCCCc--CCC---CCHHHHHHHHHhCC--CCcEEEeCCCCCCHHHHHHHHHHHHHHcCCce
Confidence 24567889999999854311 110 11344556666542 5899999998742 2 2456677 89999
Q ss_pred eeeccccccCc
Q 020013 192 ICLGTRFVASE 202 (332)
Q Consensus 192 V~~GT~fl~t~ 202 (332)
+.+|.-.+-.+
T Consensus 262 v~~GRNIfQ~~ 272 (304)
T PRK06852 262 NATGRNIHQKP 272 (304)
T ss_pred eeechhhhcCC
Confidence 99998776653
|
|
| >TIGR02129 hisA_euk phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase, eukaryotic type | Back alignment and domain information |
|---|
Probab=97.16 E-value=0.0042 Score=56.12 Aligned_cols=85 Identities=15% Similarity=0.078 Sum_probs=62.3
Q ss_pred HHHHHHHHHcCCCEEEEecCCCCcccCCCCchhhhHHHHHHHhCCCCCcEEeecCcCCHHHHHHHHHcCcceeeeccccc
Q 020013 120 FDEARKAVNAGVDAIIVQGREAGGHVIGQDGLISLLPMVVDLIGDRDIPIIAAGGIVDARGYVAALSLGAQGICLGTRFV 199 (332)
Q Consensus 120 ~~~a~~a~~~g~D~ivv~G~eaGGh~~~~~~~~~ll~~i~~~~~~~~iPviaaGGI~~~~~v~~al~~GA~gV~~GT~fl 199 (332)
.+.|+...+.|++.+=+.-- | .. ...++.++.+.+ ++||...|||.+ +++.+++.+||+.|.+||..+
T Consensus 41 ~~~A~~~~~~Ga~~lHvVDL---g----~~-n~~~i~~i~~~~---~~~v~vGGGIr~-e~v~~~l~aGa~rVvIGS~av 108 (253)
T TIGR02129 41 SYYAKLYKDDGVKGCHVIML---G----PN-NDDAAKEALHAY---PGGLQVGGGIND-TNAQEWLDEGASHVIVTSWLF 108 (253)
T ss_pred HHHHHHHHHcCCCEEEEEEC---C----CC-cHHHHHHHHHhC---CCCEEEeCCcCH-HHHHHHHHcCCCEEEECcHHH
Confidence 56777778888887755332 1 12 467788888876 799999999976 999999999999999999987
Q ss_pred cCccCCCCHHHHHHHhcC
Q 020013 200 ASEESYAHPEYKRKLVEM 217 (332)
Q Consensus 200 ~t~Es~~~~~~k~~~~~~ 217 (332)
..+ .-.++.+++...+-
T Consensus 109 ~~~-~i~~~~~~~i~~~f 125 (253)
T TIGR02129 109 TKG-KFDLKRLKEIVSLV 125 (253)
T ss_pred hCC-CCCHHHHHHHHHHh
Confidence 643 22244555555543
|
This enzyme acts in the biosynthesis of histidine and has been characterized in S. cerevisiae and Arabidopsis where it complements the E. coli HisA gene. In eukaryotes the gene is known as HIS6. In bacteria, this gene is found in Fibrobacter succinogenes, presumably due to lateral gene transfer from plants in the rumen gut. |
| >cd04723 HisA_HisF Phosphoribosylformimino-5-aminoimidazole carboxamide ribonucleotide (ProFAR) isomerase (HisA) and the cyclase subunit of imidazoleglycerol phosphate synthase (HisF) | Back alignment and domain information |
|---|
Probab=97.15 E-value=0.0024 Score=57.33 Aligned_cols=87 Identities=18% Similarity=0.242 Sum_probs=63.5
Q ss_pred HHHHHHHHHcCCCEEEEecCCC-CcccCCCCchhhhHHHHHHHhCCCCCcEEeecCcCCHHHHHHHHHcCcceeeecccc
Q 020013 120 FDEARKAVNAGVDAIIVQGREA-GGHVIGQDGLISLLPMVVDLIGDRDIPIIAAGGIVDARGYVAALSLGAQGICLGTRF 198 (332)
Q Consensus 120 ~~~a~~a~~~g~D~ivv~G~ea-GGh~~~~~~~~~ll~~i~~~~~~~~iPviaaGGI~~~~~v~~al~~GA~gV~~GT~f 198 (332)
.+.|+...+.|+|.+.+---++ -||. ..+.++.++.+.+ .+|+.+.|||.+.+++.+++.+||+-|++||..
T Consensus 38 ~~~a~~~~~~g~~~l~i~DLd~~~~~~----~n~~~i~~i~~~~---~~~v~vgGGir~~edv~~~l~~Ga~~viigt~~ 110 (233)
T cd04723 38 LDVARAYKELGFRGLYIADLDAIMGRG----DNDEAIRELAAAW---PLGLWVDGGIRSLENAQEWLKRGASRVIVGTET 110 (233)
T ss_pred HHHHHHHHHCCCCEEEEEeCccccCCC----ccHHHHHHHHHhC---CCCEEEecCcCCHHHHHHHHHcCCCeEEEccee
Confidence 4556667778999888743321 1332 3467788888766 689999999999999999999999999999997
Q ss_pred ccCccCCCCHHHHHHHhcCCC
Q 020013 199 VASEESYAHPEYKRKLVEMDK 219 (332)
Q Consensus 199 l~t~Es~~~~~~k~~~~~~~~ 219 (332)
+.. | ..++.+.+-.+
T Consensus 111 ~~~-~-----~~~~~~~~~~~ 125 (233)
T cd04723 111 LPS-D-----DDEDRLAALGE 125 (233)
T ss_pred ccc-h-----HHHHHHHhcCC
Confidence 754 3 34444444433
|
The ProFAR isomerase catalyzes the fourth step in histidine biosynthesis, an isomerisation of the aminoaldose moiety of ProFAR to the aminoketose of PRFAR (N-(5'-phospho-D-1'-ribulosylformimino)-5-amino-1-(5''-phospho-ribosyl)-4-imidazolecarboxamide). In bacteria and archaea, ProFAR isomerase is encoded by the HisA gene. The Imidazole glycerol phosphate synthase (IGPS) catalyzes the fifth step of histidine biosynthesis, the formation of the imidazole ring. IGPS converts N1-(5'-phosphoribulosyl)-formimino-5-aminoimidazole-4-carboxamide ribonucleotide (PRFAR) to imidazole glycerol phosphate (ImGP) and 5'-(5-aminoimidazole-4-carboxamide) ribonucleotide (AICAR). This conversion involves two tightly coupled reactions in distinct active sites of IGPS. The two catalytic domains can be fused, like in fungi and pl |
| >PF01884 PcrB: PcrB family; InterPro: IPR008205 This entry represents geranylgeranylglyceryl phosphate (GGGP) synthase, which is a prenyltransferase that catalyses the transfer of the geranylgeranyl moiety of geranylgeranyl diphosphate (GGPP) to the C3 hydroxyl of sn-glycerol-1-phosphate (G1P) | Back alignment and domain information |
|---|
Probab=97.15 E-value=0.0016 Score=57.86 Aligned_cols=181 Identities=18% Similarity=0.182 Sum_probs=91.9
Q ss_pred CcchhhcCCccceecCCCCCCCCcHHHHHHHHhCCCceeecCCCCCCHHHHHHHHHHHHhhcCCcEEEEeecCCCCHHHH
Q 020013 1 MGWRGMLGFEYGIVQAPLGPDISGPELVAAVANAGGLGLLRAPDWEAPDYLRDLIRKTRSLTERPFGVGVVLAFPHNENI 80 (332)
Q Consensus 1 ~~~~~~l~~~~Pii~apM~~g~s~~~la~avs~aGglG~i~~~~~~~~e~~~~~i~~~r~~~~~p~gvnl~~~~~~~~~~ 80 (332)
|+|.++=+ -+=+..+|=- ....+....+.+.|.=.++..++ ..-..+.+.+..+++.++.|+-. +.... ..+
T Consensus 1 ~~~~~~~~-~h~~liDPdK--~~~~~~~~~~~~~gtDai~VGGS-~~~~~~d~vv~~ik~~~~lPvil--fPg~~--~~v 72 (230)
T PF01884_consen 1 YDIREWRK-LHATLIDPDK--PNPEEALEAACESGTDAIIVGGS-DTGVTLDNVVALIKRVTDLPVIL--FPGSP--SQV 72 (230)
T ss_dssp SGGGG-----EEEEE-TTS--S-HHHHHHHHHCTT-SEEEEE-S-THCHHHHHHHHHHHHHSSS-EEE--ETSTC--CG-
T ss_pred Cccccccc-ceEEEECCCC--CCcHHHHHHHHhcCCCEEEECCC-CCccchHHHHHHHHhcCCCCEEE--eCCCh--hhc
Confidence 45555544 3555667853 44455555666777655554433 21234566677777777888543 32221 122
Q ss_pred HHHHhcCCcEEEEc---cCCCcHH-------HHHHHHhCCCEEEEe-------------c-------CCHHHHHH-----
Q 020013 81 KAILSEKVAVLQVS---WGEYSEE-------LVLEAHSAGVKVVPQ-------------V-------GSFDEARK----- 125 (332)
Q Consensus 81 ~~~~~~~~~~I~~~---~g~~~~~-------~i~~~~~~g~~v~~~-------------v-------~s~~~a~~----- 125 (332)
..++|.+.+. -+..|.- .+..+++.+..+++. + .+..+...
T Consensus 73 ----s~~aDail~~svlNs~n~~~iig~~~~aa~~~~~~~~e~ip~gYivi~~g~~v~~v~~a~pi~~~~~~iaa~~alA 148 (230)
T PF01884_consen 73 ----SPGADAILFPSVLNSRNPYWIIGAQVEAAPLIKKLGLEVIPTGYIVINPGSKVARVTGARPIPLDKPEIAAAAALA 148 (230)
T ss_dssp -----TTSSEEEEEEETTBSSTTTTTHHHHHHHHHCHHHHCCEEEEEEEEESTTSHHHHHTTB-----SHHHHHHHHHHH
T ss_pred ----CcCCCEEEEEEEecCCCcchHhhHHHHHHHHHHhhcceecceEEEEECCCCceEEeecceecCCCcHHHHHHHHHH
Confidence 2467777653 1222221 112223333333321 0 12222211
Q ss_pred HHHcCCCEEEEec-CCCCcccCCCCchhhhHHHHHHHhCCCCCcEEeecCcCCHHHHHHHHHcCcceeeeccccccC
Q 020013 126 AVNAGVDAIIVQG-REAGGHVIGQDGLISLLPMVVDLIGDRDIPIIAAGGIVDARGYVAALSLGAQGICLGTRFVAS 201 (332)
Q Consensus 126 a~~~g~D~ivv~G-~eaGGh~~~~~~~~~ll~~i~~~~~~~~iPviaaGGI~~~~~v~~al~~GA~gV~~GT~fl~t 201 (332)
..-.|-.+|-++. +.+- ++. -..+.++++.+. ++|+|..|||.+.+.+.+++.+|||.|++||.|--.
T Consensus 149 ~~~~g~~~iYLEaGSGa~----~~v--~~~v~~~~~~~~--~~~LivGGGIrs~e~A~~~~~aGAD~IVvGn~iee~ 217 (230)
T PF01884_consen 149 AEYLGMPIIYLEAGSGAY----GPV--PEEVIAAVKKLS--DIPLIVGGGIRSPEQAREMAEAGADTIVVGNAIEED 217 (230)
T ss_dssp HHHTT-SEEEEE--TTSS----S-H--HHHHHHHHHHSS--SSEEEEESS--SHHHHHHHHCTTSSEEEESCHHHHH
T ss_pred HHHhCCCEEEEEeCCCCC----CCc--cHHHHHHHHhcC--CccEEEeCCcCCHHHHHHHHHCCCCEEEECCEEEEc
Confidence 2235888888853 3111 221 144445555553 799999999999999999999999999999997543
|
This reaction is the first ether-bond-formation step in the biosynthesis of archaeal membrane lipids. This entry also matches putative glycerol-1-phosphate prenyltransferases that may catalyse the transfer of a prenyl moiety to sn-glycerol-1-phosphate (G1P) []. Some of the prokaryotic proteins in this family are related to pcrB. The Staphylococcus aureus chromosomal gene pcrA encodes a protein with significant similarity (40% identity) to two Escherichia coli helicases: the helicase II encoded by the uvrD gene and the Rep helicase. PcrB gene seems to belong to an operon containing at least one other gene, pcrBA, downstream from pcrB []. The PcrB proteins often contain an FMN binding site although the function of these proteins is still unknown.; GO: 0016765 transferase activity, transferring alkyl or aryl (other than methyl) groups; PDB: 1VIZ_A 2F6X_B 2F6U_B 3VKD_A 3VKA_A 3VK5_B 3VKC_B 3VKB_B. |
| >PRK00230 orotidine 5'-phosphate decarboxylase; Reviewed | Back alignment and domain information |
|---|
Probab=97.11 E-value=0.011 Score=52.91 Aligned_cols=131 Identities=14% Similarity=0.212 Sum_probs=78.5
Q ss_pred HHHHHHhh-cCCcEEEEe--ecCCCCHHHHHHHHhcCCcEEEEccCCCcHHHHHHHHhC------CCEEEEe-cCC--HH
Q 020013 54 LIRKTRSL-TERPFGVGV--VLAFPHNENIKAILSEKVAVLQVSWGEYSEELVLEAHSA------GVKVVPQ-VGS--FD 121 (332)
Q Consensus 54 ~i~~~r~~-~~~p~gvnl--~~~~~~~~~~~~~~~~~~~~I~~~~g~~~~~~i~~~~~~------g~~v~~~-v~s--~~ 121 (332)
.++.+++. ...++-+.+ +.+.+ ...++.+.+.|++.+.+|.. ...+.++.+.+. +..+... .++ .+
T Consensus 45 ~i~~l~~~~~~i~~D~Kl~Di~~t~-~~~i~~~~~~gad~itvH~~-ag~~~i~~~~~~~~~~~~~~~~~V~~lts~~~~ 122 (230)
T PRK00230 45 FVRELKQRGFKVFLDLKLHDIPNTV-AKAVRALAKLGVDMVNVHAS-GGPRMMKAAREALEPKSRPLLIAVTVLTSMDEE 122 (230)
T ss_pred HHHHHHhcCCCEEEEeehhhccccH-HHHHHHHHHcCCCEEEEccc-CCHHHHHHHHHHhhccCCCeEEEEEECCCCCHH
Confidence 45566654 233444454 44333 45677788899999999953 345556555432 2233322 222 12
Q ss_pred HH-----------------HHHHHcCCCEEEEecCCCCcccCCCCchhhhHHHHHHHhCCCCCcEEeecCcCCHH-----
Q 020013 122 EA-----------------RKAVNAGVDAIIVQGREAGGHVIGQDGLISLLPMVVDLIGDRDIPIIAAGGIVDAR----- 179 (332)
Q Consensus 122 ~a-----------------~~a~~~g~D~ivv~G~eaGGh~~~~~~~~~ll~~i~~~~~~~~iPviaaGGI~~~~----- 179 (332)
++ +.+.+.|+|++++... .++.+++... +-.+..++||. ++
T Consensus 123 ~l~~~~~~~~~~~~v~~~a~~a~~~g~dgvv~~~~--------------~~~~ir~~~~--~~~~~v~pGI~-~~g~~~~ 185 (230)
T PRK00230 123 DLAELGINLSLEEQVLRLAKLAQEAGLDGVVCSAQ--------------EAAAIREATG--PDFLLVTPGIR-PAGSDAG 185 (230)
T ss_pred HHHhCcCCCCHHHHHHHHHHHHHHcCCeEEEeChH--------------HHHHHHhhcC--CceEEEcCCcC-CCCCCcc
Confidence 22 2345678888887322 1234444432 33557789994 44
Q ss_pred ------HHHHHHHcCcceeeeccccccCcc
Q 020013 180 ------GYVAALSLGAQGICLGTRFVASEE 203 (332)
Q Consensus 180 ------~v~~al~~GA~gV~~GT~fl~t~E 203 (332)
...+++..|||++++|+.+..++.
T Consensus 186 dq~~~~~~~~ai~~Gad~iVvGR~I~~a~d 215 (230)
T PRK00230 186 DQKRVMTPAQAIAAGSDYIVVGRPITQAAD 215 (230)
T ss_pred hHHHHhCHHHHHHcCCCEEEECCcccCCCC
Confidence 588899999999999999987755
|
|
| >cd02929 TMADH_HD_FMN Trimethylamine dehydrogenase (TMADH) and histamine dehydrogenase (HD) FMN-binding domain | Back alignment and domain information |
|---|
Probab=97.03 E-value=0.014 Score=56.12 Aligned_cols=49 Identities=14% Similarity=0.193 Sum_probs=42.5
Q ss_pred hhhHHHHHHHhCCCCCcEEeecCcCCHHHHHHHHHcC-cceeeeccccccCcc
Q 020013 152 ISLLPMVVDLIGDRDIPIIAAGGIVDARGYVAALSLG-AQGICLGTRFVASEE 203 (332)
Q Consensus 152 ~~ll~~i~~~~~~~~iPviaaGGI~~~~~v~~al~~G-A~gV~~GT~fl~t~E 203 (332)
+.+..++++.+ ++||++.|||.+++++.++++.| ||.|.+|..|+..++
T Consensus 278 ~~~~~~ik~~~---~~pvi~~G~i~~~~~~~~~l~~g~~D~V~~gR~~ladP~ 327 (370)
T cd02929 278 EPYIKFVKQVT---SKPVVGVGRFTSPDKMVEVVKSGILDLIGAARPSIADPF 327 (370)
T ss_pred HHHHHHHHHHC---CCCEEEeCCCCCHHHHHHHHHcCCCCeeeechHhhhCch
Confidence 45566777766 79999999999999999999987 999999999997754
|
TMADH is an iron-sulfur flavoprotein that catalyzes the oxidative demethylation of trimethylamine to form dimethylamine and formaldehyde. The protein forms a symetrical dimer with each subunit containing one 4Fe-4S cluster and one FMN cofactor. It contains a unique flavin, in the form of a 6-S-cysteinyl FMN which is bent by ~25 degrees along the N5-N10 axis of the flavin isoalloxazine ring. This modification of the conformation of the flavin is thought to facilitate catalysis.The closely related histamine dehydrogenase catalyzes oxidative deamination of histamine. |
| >PRK07709 fructose-bisphosphate aldolase; Provisional | Back alignment and domain information |
|---|
Probab=97.03 E-value=0.099 Score=48.27 Aligned_cols=176 Identities=16% Similarity=0.172 Sum_probs=110.7
Q ss_pred CCCcHHHHHHHHhCC---Cceeec-C----CCC-CCHHHHHHHHHHHHhhcC--CcEEEEeecCCCCHHHHHHHHhcCCc
Q 020013 21 DISGPELVAAVANAG---GLGLLR-A----PDW-EAPDYLRDLIRKTRSLTE--RPFGVGVVLAFPHNENIKAILSEKVA 89 (332)
Q Consensus 21 g~s~~~la~avs~aG---glG~i~-~----~~~-~~~e~~~~~i~~~r~~~~--~p~gvnl~~~~~~~~~~~~~~~~~~~ 89 (332)
.+.+.+.+.++-++- ..++|- . ..+ ...+.+...++.+.+... .|+.+++=-- .+.+.+..+++.|..
T Consensus 24 N~~n~e~~~avi~AAe~~~sPvIiq~~~~~~~~~~~~~~~~~~~~~~a~~~~~~VPV~lHLDHg-~~~e~i~~ai~~Gft 102 (285)
T PRK07709 24 NMNNLEWTQAILAAAEEEKSPVILGVSEGAARHMTGFKTVVAMVKALIEEMNITVPVAIHLDHG-SSFEKCKEAIDAGFT 102 (285)
T ss_pred EECCHHHHHHHHHHHHHHCCCEEEEcCcchhhhcCCHHHHHHHHHHHHHHcCCCCcEEEECCCC-CCHHHHHHHHHcCCC
Confidence 456777776666542 233331 1 012 344555555665544333 5777765322 235677788888988
Q ss_pred EEEEccCCCc--------HHHHHHHHhCCCEEEE-----------------ecCCHHHHHHHHH-cCCCEEEE-ecCCCC
Q 020013 90 VLQVSWGEYS--------EELVLEAHSAGVKVVP-----------------QVGSFDEARKAVN-AGVDAIIV-QGREAG 142 (332)
Q Consensus 90 ~I~~~~g~~~--------~~~i~~~~~~g~~v~~-----------------~v~s~~~a~~a~~-~g~D~ivv-~G~eaG 142 (332)
.|-+.....| .++++.++..|+.|=. ..+++++|+...+ .|+|.+-+ .|.-=|
T Consensus 103 SVM~DgS~lp~eeNi~~Trevv~~Ah~~gv~VEaElG~igg~ed~~~~~~~~yT~peeA~~Fv~~TgvD~LAvaiGt~HG 182 (285)
T PRK07709 103 SVMIDASHHPFEENVETTKKVVEYAHARNVSVEAELGTVGGQEDDVIAEGVIYADPAECKHLVEATGIDCLAPALGSVHG 182 (285)
T ss_pred EEEEeCCCCCHHHHHHHHHHHHHHHHHcCCEEEEEEeccCCccCCcccccccCCCHHHHHHHHHHhCCCEEEEeeccccc
Confidence 8877633323 2445566666765521 0368899988765 69999876 333212
Q ss_pred cccCCCCchhhhHHHHHHHhCCCCCcEEeecCcCCH-HHHHHHHHcCcceeeecccccc
Q 020013 143 GHVIGQDGLISLLPMVVDLIGDRDIPIIAAGGIVDA-RGYVAALSLGAQGICLGTRFVA 200 (332)
Q Consensus 143 Gh~~~~~~~~~ll~~i~~~~~~~~iPviaaGGI~~~-~~v~~al~~GA~gV~~GT~fl~ 200 (332)
-..+.+.-.+.+|.++.+.+ ++|++.-||=+.+ +++.+++.+|..-|=++|.+..
T Consensus 183 ~Y~~~p~L~~~~L~~I~~~~---~iPLVLHGgSG~~~e~~~~ai~~Gi~KiNi~T~l~~ 238 (285)
T PRK07709 183 PYKGEPNLGFAEMEQVRDFT---GVPLVLHGGTGIPTADIEKAISLGTSKINVNTENQI 238 (285)
T ss_pred CcCCCCccCHHHHHHHHHHH---CCCEEEeCCCCCCHHHHHHHHHcCCeEEEeChHHHH
Confidence 11112334588899999887 7999988876665 7889999999999999998643
|
|
| >cd00947 TBP_aldolase_IIB Tagatose-1,6-bisphosphate (TBP) aldolase and related Type B Class II aldolases | Back alignment and domain information |
|---|
Probab=97.02 E-value=0.095 Score=48.18 Aligned_cols=176 Identities=20% Similarity=0.236 Sum_probs=114.8
Q ss_pred CCCcHHHHHHHHhCC---Cceeec-CC----CCCCHHHHHHHHHHHHhhcCCcEEEEeecCCCCHHHHHHHHhcCCcEEE
Q 020013 21 DISGPELVAAVANAG---GLGLLR-AP----DWEAPDYLRDLIRKTRSLTERPFGVGVVLAFPHNENIKAILSEKVAVLQ 92 (332)
Q Consensus 21 g~s~~~la~avs~aG---glG~i~-~~----~~~~~e~~~~~i~~~r~~~~~p~gvnl~~~~~~~~~~~~~~~~~~~~I~ 92 (332)
.+.+.+.+.++-++. ..++|- .. .+...+.+...+..+.+....|+.+++=--. +.+.+..+++.|...|-
T Consensus 19 N~~n~e~~~avi~AAe~~~sPvIi~~~~~~~~~~~~~~~~~~~~~~a~~~~VPV~lHLDH~~-~~~~i~~ai~~GftSVM 97 (276)
T cd00947 19 NINNLETLKAILEAAEETRSPVILQISEGAIKYAGLELLVAMVKAAAERASVPVALHLDHGS-SFELIKRAIRAGFSSVM 97 (276)
T ss_pred eeCCHHHHHHHHHHHHHhCCCEEEEcCcchhhhCCHHHHHHHHHHHHHHCCCCEEEECCCCC-CHHHHHHHHHhCCCEEE
Confidence 355667776666542 234442 10 1334566666676666556778888753222 35677788899999888
Q ss_pred EccCCCcH--------HHHHHHHhCCCEEEE-----------------ecCCHHHHHHHHH-cCCCEEEE-ecCCCCccc
Q 020013 93 VSWGEYSE--------ELVLEAHSAGVKVVP-----------------QVGSFDEARKAVN-AGVDAIIV-QGREAGGHV 145 (332)
Q Consensus 93 ~~~g~~~~--------~~i~~~~~~g~~v~~-----------------~v~s~~~a~~a~~-~g~D~ivv-~G~eaGGh~ 145 (332)
+.....|. ++++.++..|+.|=. ..++++++....+ .|+|.+-+ .|.-=|...
T Consensus 98 iD~S~l~~eeNi~~t~~vv~~ah~~gv~VEaElG~i~g~e~~~~~~~~~~T~pe~a~~Fv~~TgvD~LAvsiGt~HG~Y~ 177 (276)
T cd00947 98 IDGSHLPFEENVAKTKEVVELAHAYGVSVEAELGRIGGEEDGVVGDEGLLTDPEEAEEFVEETGVDALAVAIGTSHGAYK 177 (276)
T ss_pred eCCCCCCHHHHHHHHHHHHHHHHHcCCeEEEEEeeecCccCCcccccccCCCHHHHHHHHHHHCCCEEEeccCccccccC
Confidence 76433332 345566777766521 1346888888765 59999986 233212221
Q ss_pred C-CCCchhhhHHHHHHHhCCCCCcEEeecCcCCH-HHHHHHHHcCcceeeecccccc
Q 020013 146 I-GQDGLISLLPMVVDLIGDRDIPIIAAGGIVDA-RGYVAALSLGAQGICLGTRFVA 200 (332)
Q Consensus 146 ~-~~~~~~~ll~~i~~~~~~~~iPviaaGGI~~~-~~v~~al~~GA~gV~~GT~fl~ 200 (332)
. .+.-.+.++.++.+.+ ++|++.-||=+.+ +++.+++..|..-|=++|.+..
T Consensus 178 ~~~p~L~~~~L~~i~~~~---~vPLVlHGgSG~~~e~~~~ai~~Gi~KiNi~T~l~~ 231 (276)
T cd00947 178 GGEPKLDFDRLKEIAERV---NVPLVLHGGSGIPDEQIRKAIKLGVCKININTDLRL 231 (276)
T ss_pred CCCCccCHHHHHHHHHHh---CCCEEEeCCCCCCHHHHHHHHHcCCeEEEeChHHHH
Confidence 1 2334588999999988 7999988876666 6699999999999999998753
|
TBP aldolase is a tetrameric class II aldolase that catalyzes the reversible condensation of dihydroxyacetone phosphate with glyceraldehyde 3-phsophate to produce tagatose 1,6-bisphosphate. There is an absolute requirement for a divalent metal ion, usually zinc, and in addition the enzymes are activated by monovalent cations such as Na+. The type A and type B Class II FBPA's differ in the presence and absence of distinct indels in the sequence that result in differing loop lengths in the structures. |
| >TIGR01858 tag_bisphos_ald class II aldolase, tagatose bisphosphate family | Back alignment and domain information |
|---|
Probab=97.01 E-value=0.088 Score=48.55 Aligned_cols=177 Identities=18% Similarity=0.227 Sum_probs=113.9
Q ss_pred CCCcHHHHHHHHhCC---CceeecC--C---CCCCHHHHHHHHHHHHhhcCCcEEEEeecCCCCHHHHHHHHhcCCcEEE
Q 020013 21 DISGPELVAAVANAG---GLGLLRA--P---DWEAPDYLRDLIRKTRSLTERPFGVGVVLAFPHNENIKAILSEKVAVLQ 92 (332)
Q Consensus 21 g~s~~~la~avs~aG---glG~i~~--~---~~~~~e~~~~~i~~~r~~~~~p~gvnl~~~~~~~~~~~~~~~~~~~~I~ 92 (332)
.+.+.+.+.++-+|- ..++|-. . .+...+.+...+..+.+..+.|+.+++=-. .+.+.+..+++.|...|-
T Consensus 22 N~~n~e~~~avi~AAee~~sPvIlq~s~~~~~~~~~~~~~~~~~~~a~~~~VPValHLDHg-~~~e~i~~ai~~GFtSVM 100 (282)
T TIGR01858 22 NIHNLETIQAVVETAAEMRSPVILAGTPGTFKHAGTEYIVALCSAASTTYNMPLALHLDHH-ESLDDIRQKVHAGVRSAM 100 (282)
T ss_pred EeCCHHHHHHHHHHHHHhCCCEEEEeCccHHhhCCHHHHHHHHHHHHHHCCCCEEEECCCC-CCHHHHHHHHHcCCCEEe
Confidence 356777777766552 2344421 0 133455566666666655677888775322 235778888999999887
Q ss_pred EccCCCcH--------HHHHHHHhCCCEEEE-------------------ecCCHHHHHHHH-HcCCCEEEE-ecCCCCc
Q 020013 93 VSWGEYSE--------ELVLEAHSAGVKVVP-------------------QVGSFDEARKAV-NAGVDAIIV-QGREAGG 143 (332)
Q Consensus 93 ~~~g~~~~--------~~i~~~~~~g~~v~~-------------------~v~s~~~a~~a~-~~g~D~ivv-~G~eaGG 143 (332)
+.....|. ++++.++..|+.|=. ..+++++|+... +.|+|.+-+ .|.-=|-
T Consensus 101 ~DgS~lp~eeNi~~T~~vv~~Ah~~gv~VEaElG~vgg~e~~~~~~~~~~~~T~peea~~Fv~~TgvD~LAvaiGt~HG~ 180 (282)
T TIGR01858 101 IDGSHFPFAQNVKLVKEVVDFCHRQDCSVEAELGRLGGVEDDLSVDEEDALYTDPQEAKEFVEATGVDSLAVAIGTAHGL 180 (282)
T ss_pred ecCCCCCHHHHHHHHHHHHHHHHHcCCeEEEEEEecCCccCCCccccchhccCCHHHHHHHHHHHCcCEEecccCccccC
Confidence 76333332 345556666665421 135778888766 579999876 3432222
Q ss_pred ccCCCCchhhhHHHHHHHhCCCCCcEEeecCcCC-HHHHHHHHHcCcceeeeccccccC
Q 020013 144 HVIGQDGLISLLPMVVDLIGDRDIPIIAAGGIVD-ARGYVAALSLGAQGICLGTRFVAS 201 (332)
Q Consensus 144 h~~~~~~~~~ll~~i~~~~~~~~iPviaaGGI~~-~~~v~~al~~GA~gV~~GT~fl~t 201 (332)
....+.-.+.+|.++.+.+ ++|++.-||=+. .+++.+++.+|..-|=++|.+..+
T Consensus 181 yk~~p~Ldf~~L~~I~~~~---~iPLVlHGgSG~~~e~~~~ai~~Gi~KiNi~T~l~~a 236 (282)
T TIGR01858 181 YKKTPKLDFDRLAEIREVV---DVPLVLHGASDVPDEDVRRTIELGICKVNVATELKIA 236 (282)
T ss_pred cCCCCccCHHHHHHHHHHh---CCCeEEecCCCCCHHHHHHHHHcCCeEEEeCcHHHHH
Confidence 2212334589999999988 799998776444 467889999999999999987644
|
This model describes tagatose-1,6-bisphosphate aldolases, and perhaps other closely related class II aldolases. This tetrameric, Zn2+-dependent enzyme is related to the class II fructose bisphosphate aldolase; fructose 1,6-bisphosphate and tagatose 1,6 bisphosphate differ only in chirality at C4. |
| >PRK12737 gatY tagatose-bisphosphate aldolase; Reviewed | Back alignment and domain information |
|---|
Probab=97.01 E-value=0.091 Score=48.50 Aligned_cols=176 Identities=18% Similarity=0.207 Sum_probs=110.0
Q ss_pred CCCcHHHHHHHHhCC---CceeecC--C---CCCCHHHHHHHHHHHHhhcCCcEEEEeecCCCCHHHHHHHHhcCCcEEE
Q 020013 21 DISGPELVAAVANAG---GLGLLRA--P---DWEAPDYLRDLIRKTRSLTERPFGVGVVLAFPHNENIKAILSEKVAVLQ 92 (332)
Q Consensus 21 g~s~~~la~avs~aG---glG~i~~--~---~~~~~e~~~~~i~~~r~~~~~p~gvnl~~~~~~~~~~~~~~~~~~~~I~ 92 (332)
.+.+.+++.++-+|. ..++|-. . .|...+.+...+..+.+..+.|+.+++=-. .+.+.+..+++.|...|-
T Consensus 24 N~~n~e~~~avi~AAee~~sPvIiq~~~~~~~~~g~~~~~~~~~~~a~~~~VPValHLDH~-~~~e~i~~ai~~GftSVM 102 (284)
T PRK12737 24 NIHNLETLQVVVETAAELRSPVILAGTPGTFSYAGTDYIVAIAEVAARKYNIPLALHLDHH-EDLDDIKKKVRAGIRSVM 102 (284)
T ss_pred EeCCHHHHHHHHHHHHHhCCCEEEEcCccHHhhCCHHHHHHHHHHHHHHCCCCEEEECCCC-CCHHHHHHHHHcCCCeEE
Confidence 355666666665542 2333311 0 123445555555555555567877775322 235678888888988887
Q ss_pred EccCCCcH--------HHHHHHHhCCCEEEE-------------------ecCCHHHHHHHH-HcCCCEEEE-ecCCCCc
Q 020013 93 VSWGEYSE--------ELVLEAHSAGVKVVP-------------------QVGSFDEARKAV-NAGVDAIIV-QGREAGG 143 (332)
Q Consensus 93 ~~~g~~~~--------~~i~~~~~~g~~v~~-------------------~v~s~~~a~~a~-~~g~D~ivv-~G~eaGG 143 (332)
+.....|. ++++.++..|+.|=. ..+++++|+... +.|+|.+-+ .|.-=|-
T Consensus 103 iDgS~lp~eeNi~~T~~vv~~Ah~~gvsVEaElG~igg~e~~~~~~~~~~~~T~peeA~~Fv~~TgvD~LAvaiGt~HG~ 182 (284)
T PRK12737 103 IDGSHLSFEENIAIVKEVVEFCHRYDASVEAELGRLGGQEDDLVVDEKDAMYTNPDAAAEFVERTGIDSLAVAIGTAHGL 182 (284)
T ss_pred ecCCCCCHHHHHHHHHHHHHHHHHcCCEEEEEEeeccCccCCcccccccccCCCHHHHHHHHHHhCCCEEeeccCccccc
Confidence 75333222 445566666665521 135788888866 479999876 3432222
Q ss_pred ccCCCCchhhhHHHHHHHhCCCCCcEEeecCcCC-HHHHHHHHHcCcceeeecccccc
Q 020013 144 HVIGQDGLISLLPMVVDLIGDRDIPIIAAGGIVD-ARGYVAALSLGAQGICLGTRFVA 200 (332)
Q Consensus 144 h~~~~~~~~~ll~~i~~~~~~~~iPviaaGGI~~-~~~v~~al~~GA~gV~~GT~fl~ 200 (332)
....+.-.+.++.++.+.+ ++|++.-||=+. .+++.+++.+|..-|=++|.+..
T Consensus 183 y~~~p~Ld~~~L~~I~~~~---~iPLVlHGgSG~~~e~~~kai~~Gi~KiNi~T~l~~ 237 (284)
T PRK12737 183 YKGEPKLDFERLAEIREKV---SIPLVLHGASGVPDEDVKKAISLGICKVNVATELKI 237 (284)
T ss_pred cCCCCcCCHHHHHHHHHHh---CCCEEEeCCCCCCHHHHHHHHHCCCeEEEeCcHHHH
Confidence 2212334588899999988 799998775443 46688999999999999998653
|
|
| >TIGR00167 cbbA ketose-bisphosphate aldolases | Back alignment and domain information |
|---|
Probab=97.00 E-value=0.098 Score=48.42 Aligned_cols=176 Identities=17% Similarity=0.224 Sum_probs=111.7
Q ss_pred CCcHHHHHHHHhCC---CceeecC--C---CC-CCHHHHHHHHHHHHhhc--CCcEEEEeecCCCCHHHHHHHHhcCCcE
Q 020013 22 ISGPELVAAVANAG---GLGLLRA--P---DW-EAPDYLRDLIRKTRSLT--ERPFGVGVVLAFPHNENIKAILSEKVAV 90 (332)
Q Consensus 22 ~s~~~la~avs~aG---glG~i~~--~---~~-~~~e~~~~~i~~~r~~~--~~p~gvnl~~~~~~~~~~~~~~~~~~~~ 90 (332)
+.+.+.+.++-+|. ..++|-. . .+ ..++.+...+....+.. +.|+.+++=-- .+.+.+..+++.|...
T Consensus 25 ~~n~e~~~avi~AAee~~sPvIlq~~~~~~~~~~g~~~~~~~~~~~a~~~~~~VPV~lHLDHg-~~~e~i~~ai~~GftS 103 (288)
T TIGR00167 25 INNLETINAVLEAAAEEKSPVIIQFSNGAAKYIAGLGAISAMVKAMSEAYPYGVPVALHLDHG-ASEEDCAQAVKAGFSS 103 (288)
T ss_pred ECCHHHHHHHHHHHHHHCCCEEEECCcchhhccCCHHHHHHHHHHHHHhccCCCcEEEECCCC-CCHHHHHHHHHcCCCE
Confidence 45666666665542 2333311 0 12 34555666666555544 56777664322 2357778888888888
Q ss_pred EEEccCCCc--------HHHHHHHHhCCCEEEEe-------------------cCCHHHHHHHHH-cCCCEEEE-ecCCC
Q 020013 91 LQVSWGEYS--------EELVLEAHSAGVKVVPQ-------------------VGSFDEARKAVN-AGVDAIIV-QGREA 141 (332)
Q Consensus 91 I~~~~g~~~--------~~~i~~~~~~g~~v~~~-------------------v~s~~~a~~a~~-~g~D~ivv-~G~ea 141 (332)
|-+.....| .++++..+..|+.|=.. .+++++++...+ .|+|.+-+ .|.-=
T Consensus 104 VMiDgS~lp~eeNi~~T~~vv~~Ah~~gv~VEaElG~vgg~e~~~~~~~~~~~~T~peea~~Fv~~TgvD~LAvaiGt~H 183 (288)
T TIGR00167 104 VMIDGSHEPFEENIELTKKVVERAHKMGVSVEAELGTLGGEEDGVSVADESALYTDPEEAKEFVKLTGVDSLAAAIGNVH 183 (288)
T ss_pred EEecCCCCCHHHHHHHHHHHHHHHHHcCCEEEEEEeeccCccCCcccccccccCCCHHHHHHHHhccCCcEEeeccCccc
Confidence 877533322 23455566666655211 346788888765 69999987 34322
Q ss_pred CcccCCCC-chhhhHHHHHHHhCCCCCcEEeecCcCCH-HHHHHHHHcCcceeeeccccccC
Q 020013 142 GGHVIGQD-GLISLLPMVVDLIGDRDIPIIAAGGIVDA-RGYVAALSLGAQGICLGTRFVAS 201 (332)
Q Consensus 142 GGh~~~~~-~~~~ll~~i~~~~~~~~iPviaaGGI~~~-~~v~~al~~GA~gV~~GT~fl~t 201 (332)
|.....+. -.+.++.++.+.+ ++|++.-||=+.+ +++.+++..|..-|=++|.+...
T Consensus 184 G~y~~~p~~Ld~~~L~~I~~~v---~vPLVlHGgSG~~~e~~~~ai~~Gi~KiNi~T~l~~a 242 (288)
T TIGR00167 184 GVYKGEPKGLDFERLEEIQKYV---NLPLVLHGGSGIPDEEIKKAISLGVVKVNIDTELQIA 242 (288)
T ss_pred cccCCCCCccCHHHHHHHHHHh---CCCEEEeCCCCCCHHHHHHHHHcCCeEEEcChHHHHH
Confidence 32222233 4688999999988 7999998877666 68999999999999999986543
|
fructose-bisphosphate and tagatose-bisphosphate aldolase. |
| >PRK06552 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional | Back alignment and domain information |
|---|
Probab=96.98 E-value=0.02 Score=50.68 Aligned_cols=100 Identities=20% Similarity=0.187 Sum_probs=71.1
Q ss_pred HHHHHHHhcCCcEEEEccCCC-cHHHHHHHHhC-----CCEEE-EecCCHHHHHHHHHcCCCEEEEecCCCCcccCCCCc
Q 020013 78 ENIKAILSEKVAVLQVSWGEY-SEELVLEAHSA-----GVKVV-PQVGSFDEARKAVNAGVDAIIVQGREAGGHVIGQDG 150 (332)
Q Consensus 78 ~~~~~~~~~~~~~I~~~~g~~-~~~~i~~~~~~-----g~~v~-~~v~s~~~a~~a~~~g~D~ivv~G~eaGGh~~~~~~ 150 (332)
...+.+.+.|+.++.+.+..+ ..+.++.+++. ++.+. .+|.+.++++.+.++|+++++--+ .
T Consensus 29 ~~~~al~~~Gi~~iEit~~~~~a~~~i~~l~~~~~~~p~~~vGaGTV~~~~~~~~a~~aGA~FivsP~-----------~ 97 (213)
T PRK06552 29 KISLAVIKGGIKAIEVTYTNPFASEVIKELVELYKDDPEVLIGAGTVLDAVTARLAILAGAQFIVSPS-----------F 97 (213)
T ss_pred HHHHHHHHCCCCEEEEECCCccHHHHHHHHHHHcCCCCCeEEeeeeCCCHHHHHHHHHcCCCEEECCC-----------C
Confidence 345677888999999886542 23567777642 23343 568899999999999999998521 1
Q ss_pred hhhhHHHHHHHhCCCCCcEEeecCcCCHHHHHHHHHcCcceeee
Q 020013 151 LISLLPMVVDLIGDRDIPIIAAGGIVDARGYVAALSLGAQGICL 194 (332)
Q Consensus 151 ~~~ll~~i~~~~~~~~iPviaaGGI~~~~~v~~al~~GA~gV~~ 194 (332)
...++....+ .++|++. |+.|+.++.+++.+|+|-|.+
T Consensus 98 ~~~v~~~~~~----~~i~~iP--G~~T~~E~~~A~~~Gad~vkl 135 (213)
T PRK06552 98 NRETAKICNL----YQIPYLP--GCMTVTEIVTALEAGSEIVKL 135 (213)
T ss_pred CHHHHHHHHH----cCCCEEC--CcCCHHHHHHHHHcCCCEEEE
Confidence 1233333222 2788876 888999999999999999996
|
|
| >PF00977 His_biosynth: Histidine biosynthesis protein; InterPro: IPR006062 Histidine is formed by several complex and distinct biochemical reactions catalysed by eight enzymes | Back alignment and domain information |
|---|
Probab=96.96 E-value=0.0012 Score=59.06 Aligned_cols=81 Identities=23% Similarity=0.362 Sum_probs=57.0
Q ss_pred CCH-HHHHHHHHcCCCEEEEecCCCCcccCCCCchhhhHHHHHHHhCCCCCcEEeecCcCCHHHHHHHHHcCcceeeecc
Q 020013 118 GSF-DEARKAVNAGVDAIIVQGREAGGHVIGQDGLISLLPMVVDLIGDRDIPIIAAGGIVDARGYVAALSLGAQGICLGT 196 (332)
Q Consensus 118 ~s~-~~a~~a~~~g~D~ivv~G~eaGGh~~~~~~~~~ll~~i~~~~~~~~iPviaaGGI~~~~~v~~al~~GA~gV~~GT 196 (332)
.++ +.|+...+.|+|.+.+---++- . .+....+.++.++.+.. .+|+.+.|||.+.+++.+++.+||+.|++||
T Consensus 29 ~dP~~~a~~~~~~g~~~l~ivDLdaa-~-~g~~~n~~~i~~i~~~~---~~~i~vgGGIrs~ed~~~ll~~Ga~~Vvigt 103 (229)
T PF00977_consen 29 GDPVEVAKAFNEQGADELHIVDLDAA-K-EGRGSNLELIKEIAKET---GIPIQVGGGIRSIEDAERLLDAGADRVVIGT 103 (229)
T ss_dssp CCHHHHHHHHHHTT-SEEEEEEHHHH-C-CTHHHHHHHHHHHHHHS---SSEEEEESSE-SHHHHHHHHHTT-SEEEESH
T ss_pred cCHHHHHHHHHHcCCCEEEEEEccCc-c-cCchhHHHHHHHHHhcC---CccEEEeCccCcHHHHHHHHHhCCCEEEeCh
Confidence 344 4455566788998876322110 0 02224577888888876 6999999999999999999999999999999
Q ss_pred ccccCcc
Q 020013 197 RFVASEE 203 (332)
Q Consensus 197 ~fl~t~E 203 (332)
..+..+|
T Consensus 104 ~~~~~~~ 110 (229)
T PF00977_consen 104 EALEDPE 110 (229)
T ss_dssp HHHHCCH
T ss_pred HHhhchh
Confidence 9887654
|
Proteins involved in steps 4 and 6 of the histidine biosynthesis pathway are contained in one family. These enzymes are called His6 and His7 in eukaryotes and HisA and HisF in prokaryotes. HisA is a phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase (5.3.1.16 from EC), involved in the fourth step of histidine biosynthesis. The bacterial HisF protein is a cyclase which catalyzes the cyclization reaction that produces D-erythro-imidazole glycerol phosphate during the sixth step of histidine biosynthesis. The yeast His7 protein is a bifunctional protein which catalyzes an amido-transferase reaction that generates imidazole-glycerol phosphate and 5-aminoimidazol-4-carboxamide. The latter is the ribonucleotide used for purine biosynthesis. The enzyme also catalyzes the cyclization reaction that produces D-erythro-imidazole glycerol phosphate, and is involved in the fifth and sixth steps in histidine biosynthesis.; GO: 0000105 histidine biosynthetic process; PDB: 2VEP_A 2X30_A 1VZW_A 2WJZ_A 2LLE_A 2A0N_A 1THF_D 1GPW_E 1VH7_A 1KA9_F .... |
| >PRK09195 gatY tagatose-bisphosphate aldolase; Reviewed | Back alignment and domain information |
|---|
Probab=96.96 E-value=0.11 Score=47.90 Aligned_cols=177 Identities=17% Similarity=0.222 Sum_probs=110.8
Q ss_pred CCCcHHHHHHHHhCC---CceeecC--C---CCCCHHHHHHHHHHHHhhcCCcEEEEeecCCCCHHHHHHHHhcCCcEEE
Q 020013 21 DISGPELVAAVANAG---GLGLLRA--P---DWEAPDYLRDLIRKTRSLTERPFGVGVVLAFPHNENIKAILSEKVAVLQ 92 (332)
Q Consensus 21 g~s~~~la~avs~aG---glG~i~~--~---~~~~~e~~~~~i~~~r~~~~~p~gvnl~~~~~~~~~~~~~~~~~~~~I~ 92 (332)
.+.+.+.+.++-++. ..++|-. . .|...+.+...+..+.+..+.|+.+++=--. +.+.+..+++.|...|-
T Consensus 24 N~~n~e~~~avi~AAee~~sPvIiq~~~~~~~~~g~~~~~~~~~~~A~~~~VPV~lHLDHg~-~~e~i~~Ai~~GftSVM 102 (284)
T PRK09195 24 NIHNLETMQVVVETAAELHSPVIIAGTPGTFSYAGTEYLLAIVSAAAKQYHHPLALHLDHHE-KFDDIAQKVRSGVRSVM 102 (284)
T ss_pred EeCCHHHHHHHHHHHHHhCCCEEEEcChhHHhhCCHHHHHHHHHHHHHHCCCCEEEECCCCC-CHHHHHHHHHcCCCEEE
Confidence 355666666665542 2333311 0 1234455555566555555678777653222 35678888888988887
Q ss_pred EccCCCc--------HHHHHHHHhCCCEEEE-------------------ecCCHHHHHHHHH-cCCCEEEE-ecCCCCc
Q 020013 93 VSWGEYS--------EELVLEAHSAGVKVVP-------------------QVGSFDEARKAVN-AGVDAIIV-QGREAGG 143 (332)
Q Consensus 93 ~~~g~~~--------~~~i~~~~~~g~~v~~-------------------~v~s~~~a~~a~~-~g~D~ivv-~G~eaGG 143 (332)
+.....| .++++.++..|+.|=. ..+++++++...+ .|+|.+-+ .|.-=|-
T Consensus 103 ~DgS~l~~eeNi~~T~~vv~~Ah~~gv~VEaElG~vgg~e~~~~~~~~~~~~T~peea~~Fv~~TgvD~LAvaiGt~HG~ 182 (284)
T PRK09195 103 IDGSHLPFAQNISLVKEVVDFCHRFDVSVEAELGRLGGQEDDLQVDEADALYTDPAQAREFVEATGIDSLAVAIGTAHGM 182 (284)
T ss_pred eCCCCCCHHHHHHHHHHHHHHHHHcCCEEEEEEecccCcccCcccccccccCCCHHHHHHHHHHHCcCEEeeccCccccc
Confidence 7633322 2345556666665421 1357888888765 69999876 3432222
Q ss_pred ccCCCCchhhhHHHHHHHhCCCCCcEEeecCcCC-HHHHHHHHHcCcceeeeccccccC
Q 020013 144 HVIGQDGLISLLPMVVDLIGDRDIPIIAAGGIVD-ARGYVAALSLGAQGICLGTRFVAS 201 (332)
Q Consensus 144 h~~~~~~~~~ll~~i~~~~~~~~iPviaaGGI~~-~~~v~~al~~GA~gV~~GT~fl~t 201 (332)
....+.-.+.++.++.+.+ ++|++.-||=+. .+++.+++..|..-|=++|.+...
T Consensus 183 y~~~p~Ld~~~L~~I~~~~---~vPLVLHGgSG~~~e~~~~ai~~Gi~KiNi~T~l~~a 238 (284)
T PRK09195 183 YKGEPKLDFDRLENIRQWV---NIPLVLHGASGLPTKDIQQTIKLGICKVNVATELKIA 238 (284)
T ss_pred cCCCCcCCHHHHHHHHHHh---CCCeEEecCCCCCHHHHHHHHHcCCeEEEeCcHHHHH
Confidence 2212334588999999988 799997775433 477889999999999999987643
|
|
| >COG5564 Predicted TIM-barrel enzyme, possibly a dioxygenase [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.95 E-value=0.015 Score=50.78 Aligned_cols=189 Identities=23% Similarity=0.315 Sum_probs=108.1
Q ss_pred cchhhcCCccceecCCCCCCCCcHHHHHHHHhCCCceeecC---CCCC-----CH----------HHHHHHHHHH---Hh
Q 020013 2 GWRGMLGFEYGIVQAPLGPDISGPELVAAVANAGGLGLLRA---PDWE-----AP----------DYLRDLIRKT---RS 60 (332)
Q Consensus 2 ~~~~~l~~~~Pii~apM~~g~s~~~la~avs~aGglG~i~~---~~~~-----~~----------e~~~~~i~~~---r~ 60 (332)
+|...++-..||+.+..+ -.+++...++|++.+|.. ++|. +. +.+.+..++. ..
T Consensus 12 ~~r~ti~~~s~iig~~~g-----TglsAkaeeagg~d~i~~~nsgr~r~ag~~Sl~gLLa~~naN~~vld~a~e~lp~~r 86 (276)
T COG5564 12 SFRYTIHKGSPIIGGGAG-----TGLSAKAEEAGGIDLIYIYNSGRYRMAGRGSLAGLLAYGNANDIVLDMAREVLPVVR 86 (276)
T ss_pred HHHHhhcCCCcccccccc-----cchhhhhhhcCCceEEEEecCccccccccchhhhhhhccCccHHHHHHHHhhCCccc
Confidence 455666667899954432 245666778899888843 2221 11 1111221111 01
Q ss_pred hcCCcEEEEeecCCCC---HHHHHHHHhcCCcEEE------EccCCC-------------cHHHHHHHHhCCCEEEEecC
Q 020013 61 LTERPFGVGVVLAFPH---NENIKAILSEKVAVLQ------VSWGEY-------------SEELVLEAHSAGVKVVPQVG 118 (332)
Q Consensus 61 ~~~~p~gvnl~~~~~~---~~~~~~~~~~~~~~I~------~~~g~~-------------~~~~i~~~~~~g~~v~~~v~ 118 (332)
.+..-+|||- .+|. .+.++.+.+.+...|+ +--|.. .-++++..++.+....+.|.
T Consensus 87 ~tpv~aGv~~--~DPf~~~~~~L~~L~~~gf~gV~NFPTv~~iDG~~R~~lEetGmG~~~Evemlr~A~~k~l~t~~yV~ 164 (276)
T COG5564 87 QTPVLAGVNG--TDPFCRMVDFLKELKTAGFSGVQNFPTVGLIDGRMRASLEETGMGYGLEVEMLREAHAKDLLTTPYVF 164 (276)
T ss_pred cCcceecccC--CCcchhHHHHHHHHHhcCCcccccCCeeEEecchhhhhHHHhCcchHHHHHHHHHHHhccccccceec
Confidence 1222345552 2332 4566777777765543 111211 11345555666777778899
Q ss_pred CHHHHHHHHHcCCCEEEEe-cCCCCcccCCCC--c---hhhhHHHHHHHhCC---CCCcEEeecCcCCHHHHHHHHH--c
Q 020013 119 SFDEARKAVNAGVDAIIVQ-GREAGGHVIGQD--G---LISLLPMVVDLIGD---RDIPIIAAGGIVDARGYVAALS--L 187 (332)
Q Consensus 119 s~~~a~~a~~~g~D~ivv~-G~eaGGh~~~~~--~---~~~ll~~i~~~~~~---~~iPviaaGGI~~~~~v~~al~--~ 187 (332)
|+++|+.+.++|+|+|+.. |..-||..+... + ..+++..+.++... .-+|+.-.|=|++|+|..--+. -
T Consensus 165 s~~eAqa~~~aGadiiv~hmg~ttgG~Igar~~~Sl~~~vel~~~~~~aar~v~kd~i~l~~GGPi~~p~da~yi~d~c~ 244 (276)
T COG5564 165 SFEEAQAMTKAGADIIVAHMGLTTGGLIGARSALSLADCVELIELAAEAARGVRKDVIPLCHGGPISMPEDARYILDRCP 244 (276)
T ss_pred CHHHHHHHHHcCcceeeecccccccceeccccccCHHHHHHHHHHHHHHHhhhhhceeeeccCCCcCCchhhHHHHhhCC
Confidence 9999999999999999983 666666553221 1 12333333333221 1277778888999999776664 5
Q ss_pred Ccceeeeccc
Q 020013 188 GAQGICLGTR 197 (332)
Q Consensus 188 GA~gV~~GT~ 197 (332)
|+||..=+|.
T Consensus 245 ~~~gfygass 254 (276)
T COG5564 245 GCDGFYGASS 254 (276)
T ss_pred CCCcccccch
Confidence 8888876664
|
|
| >PRK00507 deoxyribose-phosphate aldolase; Provisional | Back alignment and domain information |
|---|
Probab=96.95 E-value=0.0031 Score=56.09 Aligned_cols=112 Identities=20% Similarity=0.300 Sum_probs=68.4
Q ss_pred HHHHHHhcCCcEEEEc--cCC----CcHHH---HHHHHhC--C--CEEEEecC--CHHHHH----HHHHcCCCEEEE-ec
Q 020013 79 NIKAILSEKVAVLQVS--WGE----YSEEL---VLEAHSA--G--VKVVPQVG--SFDEAR----KAVNAGVDAIIV-QG 138 (332)
Q Consensus 79 ~~~~~~~~~~~~I~~~--~g~----~~~~~---i~~~~~~--g--~~v~~~v~--s~~~a~----~a~~~g~D~ivv-~G 138 (332)
..+.+++.|++-|.+- .+. ....+ ++.+++. + +|++.... +.++.. .+.++|+|+|.. .|
T Consensus 79 e~~~Ai~~GA~EiD~Vin~~~~~~g~~~~v~~ei~~v~~~~~~~~lKvIlEt~~L~~e~i~~a~~~~~~agadfIKTsTG 158 (221)
T PRK00507 79 EAKDAIANGADEIDMVINIGALKSGDWDAVEADIRAVVEAAGGAVLKVIIETCLLTDEEKVKACEIAKEAGADFVKTSTG 158 (221)
T ss_pred HHHHHHHcCCceEeeeccHHHhcCCCHHHHHHHHHHHHHhcCCceEEEEeecCcCCHHHHHHHHHHHHHhCCCEEEcCCC
Confidence 3456677888877643 221 12222 3333332 3 45554433 334333 356889997765 44
Q ss_pred CCCCcccCCCCchhhhHHHHHHHhCCCCCcEEeecCcCCHHHHHHHHHcCcceeeeccc
Q 020013 139 REAGGHVIGQDGLISLLPMVVDLIGDRDIPIIAAGGIVDARGYVAALSLGAQGICLGTR 197 (332)
Q Consensus 139 ~eaGGh~~~~~~~~~ll~~i~~~~~~~~iPviaaGGI~~~~~v~~al~~GA~gV~~GT~ 197 (332)
+..||. +...+..+++..+. +++|.++|||.|.+++.+++.+||+-+-..+.
T Consensus 159 ~~~~ga------t~~~v~~m~~~~~~-~~~IKasGGIrt~~~a~~~i~aGA~riGtS~~ 210 (221)
T PRK00507 159 FSTGGA------TVEDVKLMRETVGP-RVGVKASGGIRTLEDALAMIEAGATRLGTSAG 210 (221)
T ss_pred CCCCCC------CHHHHHHHHHHhCC-CceEEeeCCcCCHHHHHHHHHcCcceEccCcH
Confidence 444442 24555555555542 69999999999999999999999997765444
|
|
| >PRK06015 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional | Back alignment and domain information |
|---|
Probab=96.95 E-value=0.02 Score=50.14 Aligned_cols=100 Identities=15% Similarity=0.190 Sum_probs=70.6
Q ss_pred HHHHHHHhcCCcEEEEccCCC-cHHHHHHHHhC--CCEEE-EecCCHHHHHHHHHcCCCEEEEecCCCCcccCCCCchhh
Q 020013 78 ENIKAILSEKVAVLQVSWGEY-SEELVLEAHSA--GVKVV-PQVGSFDEARKAVNAGVDAIIVQGREAGGHVIGQDGLIS 153 (332)
Q Consensus 78 ~~~~~~~~~~~~~I~~~~g~~-~~~~i~~~~~~--g~~v~-~~v~s~~~a~~a~~~g~D~ivv~G~eaGGh~~~~~~~~~ 153 (332)
+..+.+.+.|+..|.+.+..+ ..+.++.+++. ++.|. .+|.+.++++.+.++|+++++--+ ....
T Consensus 20 ~ia~al~~gGi~~iEit~~tp~a~~~I~~l~~~~~~~~vGAGTVl~~e~a~~ai~aGA~FivSP~-----------~~~~ 88 (201)
T PRK06015 20 PLARALAAGGLPAIEITLRTPAALDAIRAVAAEVEEAIVGAGTILNAKQFEDAAKAGSRFIVSPG-----------TTQE 88 (201)
T ss_pred HHHHHHHHCCCCEEEEeCCCccHHHHHHHHHHHCCCCEEeeEeCcCHHHHHHHHHcCCCEEECCC-----------CCHH
Confidence 456777888999999886543 23567777653 34443 567899999999999999997521 1223
Q ss_pred hHHHHHHHhCCCCCcEEeecCcCCHHHHHHHHHcCcceeee
Q 020013 154 LLPMVVDLIGDRDIPIIAAGGIVDARGYVAALSLGAQGICL 194 (332)
Q Consensus 154 ll~~i~~~~~~~~iPviaaGGI~~~~~v~~al~~GA~gV~~ 194 (332)
++....+ .++|++. |+.|+..+..++.+||+.|-+
T Consensus 89 vi~~a~~----~~i~~iP--G~~TptEi~~A~~~Ga~~vK~ 123 (201)
T PRK06015 89 LLAAAND----SDVPLLP--GAATPSEVMALREEGYTVLKF 123 (201)
T ss_pred HHHHHHH----cCCCEeC--CCCCHHHHHHHHHCCCCEEEE
Confidence 3433332 2677754 777999999999999998764
|
|
| >PF01791 DeoC: DeoC/LacD family aldolase; InterPro: IPR002915 This family includes the enzyme deoxyribose-phosphate aldolase, which is involved in nucleotide metabolism | Back alignment and domain information |
|---|
Probab=96.94 E-value=0.0035 Score=56.31 Aligned_cols=116 Identities=22% Similarity=0.281 Sum_probs=73.4
Q ss_pred HHHHHHHhcCCcEEEEc--c---CCCc-H-------HHHHHHHhCCCEEEEecC-CHHH-------------HHHHHHcC
Q 020013 78 ENIKAILSEKVAVLQVS--W---GEYS-E-------ELVLEAHSAGVKVVPQVG-SFDE-------------ARKAVNAG 130 (332)
Q Consensus 78 ~~~~~~~~~~~~~I~~~--~---g~~~-~-------~~i~~~~~~g~~v~~~v~-s~~~-------------a~~a~~~g 130 (332)
..++.+++.|+|.|.+. + +... . .+++.+++.+++++.... +.++ ++.+.+.|
T Consensus 80 ~~ve~A~~~GAd~vd~vi~~~~~~~~~~~~~~~~i~~v~~~~~~~gl~vIlE~~l~~~~~~~~~~~~~I~~a~ria~e~G 159 (236)
T PF01791_consen 80 AEVEEAIRLGADEVDVVINYGALGSGNEDEVIEEIAAVVEECHKYGLKVILEPYLRGEEVADEKKPDLIARAARIAAELG 159 (236)
T ss_dssp HHHHHHHHTT-SEEEEEEEHHHHHTTHHHHHHHHHHHHHHHHHTSEEEEEEEECECHHHBSSTTHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHcCCceeeeeccccccccccHHHHHHHHHHHHHHHhcCCcEEEEEEecCchhhcccccHHHHHHHHHHHHHhC
Confidence 34677888899987653 2 1111 1 234455667899886632 2222 34567899
Q ss_pred CCEEEEecCCCCcccCCCCchhhhHHHHHHHhCCCCCc----EEeecCc------CCHHHHHHHHHcCc--ceeeecccc
Q 020013 131 VDAIIVQGREAGGHVIGQDGLISLLPMVVDLIGDRDIP----IIAAGGI------VDARGYVAALSLGA--QGICLGTRF 198 (332)
Q Consensus 131 ~D~ivv~G~eaGGh~~~~~~~~~ll~~i~~~~~~~~iP----viaaGGI------~~~~~v~~al~~GA--~gV~~GT~f 198 (332)
+|+|...-. +.+ +.......++.++.+.. .+| |.++||| .+.+++.+++.+|| .|+..|..+
T Consensus 160 aD~vKt~tg--~~~-~~t~~~~~~~~~~~~~~---~~p~~~~Vk~sGGi~~~~~~~~l~~a~~~i~aGa~~~G~~~Gr~i 233 (236)
T PF01791_consen 160 ADFVKTSTG--KPV-GATPEDVELMRKAVEAA---PVPGKVGVKASGGIDAEDFLRTLEDALEFIEAGADRIGTSSGRNI 233 (236)
T ss_dssp -SEEEEE-S--SSS-CSHHHHHHHHHHHHHTH---SSTTTSEEEEESSSSHHHHHHSHHHHHHHHHTTHSEEEEEEHHHH
T ss_pred CCEEEecCC--ccc-cccHHHHHHHHHHHHhc---CCCcceEEEEeCCCChHHHHHHHHHHHHHHHcCChhHHHHHHHHH
Confidence 999998433 111 12223455566666555 688 9999999 88888899999999 899888765
Q ss_pred c
Q 020013 199 V 199 (332)
Q Consensus 199 l 199 (332)
+
T Consensus 234 ~ 234 (236)
T PF01791_consen 234 W 234 (236)
T ss_dssp H
T ss_pred H
Confidence 4
|
|
| >PRK05835 fructose-bisphosphate aldolase; Provisional | Back alignment and domain information |
|---|
Probab=96.91 E-value=0.13 Score=47.94 Aligned_cols=177 Identities=17% Similarity=0.153 Sum_probs=109.6
Q ss_pred CCCcHHHHHHHHhCC---CceeecC--C---CCCCHHHHHHHHHHHHhhcC-CcEEEEeecCCCCHHHHHHHHhcCCcEE
Q 020013 21 DISGPELVAAVANAG---GLGLLRA--P---DWEAPDYLRDLIRKTRSLTE-RPFGVGVVLAFPHNENIKAILSEKVAVL 91 (332)
Q Consensus 21 g~s~~~la~avs~aG---glG~i~~--~---~~~~~e~~~~~i~~~r~~~~-~p~gvnl~~~~~~~~~~~~~~~~~~~~I 91 (332)
.+.+.+.+.++-+|. ..++|-. . .+...+.+...+..+.+... .|+.+++=--. +.+.+..+++.|.+.|
T Consensus 23 N~~n~e~~~avi~AAe~~~sPvIlq~s~~~~~~~g~~~~~~~~~~~a~~~~~VPValHLDHg~-~~e~i~~ai~~GftSV 101 (307)
T PRK05835 23 NFVNFEMLNAIFEAGNEENSPLFIQASEGAIKYMGIDMAVGMVKIMCERYPHIPVALHLDHGT-TFESCEKAVKAGFTSV 101 (307)
T ss_pred EECCHHHHHHHHHHHHHHCCCEEEEcCccHHhhCChHHHHHHHHHHHHhcCCCeEEEECCCCC-CHHHHHHHHHcCCCEE
Confidence 355677777766553 2333311 0 12344555556665555443 68877753222 3667888889999888
Q ss_pred EEccCCCc--------HHHHHHHHhCCCEEEE-------------------ecCCHHHHHHHHH-cCCCEEEE-ecCCCC
Q 020013 92 QVSWGEYS--------EELVLEAHSAGVKVVP-------------------QVGSFDEARKAVN-AGVDAIIV-QGREAG 142 (332)
Q Consensus 92 ~~~~g~~~--------~~~i~~~~~~g~~v~~-------------------~v~s~~~a~~a~~-~g~D~ivv-~G~eaG 142 (332)
-+.....| .++++.++..|+.|=. ..+++++|....+ .|+|++-+ -|.-=|
T Consensus 102 M~DgS~l~~eeNi~~T~~vve~Ah~~gv~VEaElG~vgg~ed~~~~~~~~~~~TdPeeA~~Fv~~TgvD~LAvaiGt~HG 181 (307)
T PRK05835 102 MIDASHHAFEENLELTSKVVKMAHNAGVSVEAELGRLMGIEDNISVDEKDAVLVNPKEAEQFVKESQVDYLAPAIGTSHG 181 (307)
T ss_pred EEeCCCCCHHHHHHHHHHHHHHHHHcCCEEEEEecccCCccCCcccccccccCCCHHHHHHHHHhhCCCEEEEccCcccc
Confidence 77633322 2345556666655411 1346888888764 69999876 333212
Q ss_pred ccc--CCCCchhhhHHHHHHHhCCCCCcEEeecCcCCHH----------------------HHHHHHHcCcceeeecccc
Q 020013 143 GHV--IGQDGLISLLPMVVDLIGDRDIPIIAAGGIVDAR----------------------GYVAALSLGAQGICLGTRF 198 (332)
Q Consensus 143 Gh~--~~~~~~~~ll~~i~~~~~~~~iPviaaGGI~~~~----------------------~v~~al~~GA~gV~~GT~f 198 (332)
-.. +.+.-.+.+|.++.+.+ ++|++.-||=+.++ ++.+++.+|..-|=++|-+
T Consensus 182 ~Yk~~~~p~L~f~~L~~I~~~~---~iPLVLHGgSGip~e~~~~~~~~g~~~~~~~g~~~e~~~kai~~GI~KiNi~T~l 258 (307)
T PRK05835 182 AFKFKGEPKLDFERLQEVKRLT---NIPLVLHGASAIPDDVRKSYLDAGGDLKGSKGVPFEFLQESVKGGINKVNTDTDL 258 (307)
T ss_pred ccCCCCCCccCHHHHHHHHHHh---CCCEEEeCCCCCchHHhhhhhhhccccccccCCCHHHHHHHHHcCceEEEeChHH
Confidence 221 12234588999999887 79999999887777 6788888888888887775
Q ss_pred ccC
Q 020013 199 VAS 201 (332)
Q Consensus 199 l~t 201 (332)
..+
T Consensus 259 ~~a 261 (307)
T PRK05835 259 RIA 261 (307)
T ss_pred HHH
Confidence 443
|
|
| >PRK12738 kbaY tagatose-bisphosphate aldolase; Reviewed | Back alignment and domain information |
|---|
Probab=96.90 E-value=0.14 Score=47.31 Aligned_cols=177 Identities=16% Similarity=0.195 Sum_probs=111.1
Q ss_pred CCCcHHHHHHHHhCC---Cceeec-C-C---CCCCHHHHHHHHHHHHhhcCCcEEEEeecCCCCHHHHHHHHhcCCcEEE
Q 020013 21 DISGPELVAAVANAG---GLGLLR-A-P---DWEAPDYLRDLIRKTRSLTERPFGVGVVLAFPHNENIKAILSEKVAVLQ 92 (332)
Q Consensus 21 g~s~~~la~avs~aG---glG~i~-~-~---~~~~~e~~~~~i~~~r~~~~~p~gvnl~~~~~~~~~~~~~~~~~~~~I~ 92 (332)
.+.+.+.+.+|-++- ..++|- . . .+...+.+...+..+.+....|+.+++=--. +.+.+..+++.|...|-
T Consensus 24 N~~n~e~~~avi~AAee~~sPvIlq~s~~~~~~~~~~~~~~~~~~~a~~~~VPValHLDHg~-~~e~i~~ai~~GFtSVM 102 (286)
T PRK12738 24 NIHNAETIQAILEVCSEMRSPVILAGTPGTFKHIALEEIYALCSAYSTTYNMPLALHLDHHE-SLDDIRRKVHAGVRSAM 102 (286)
T ss_pred EeCCHHHHHHHHHHHHHHCCCEEEEcCcchhhhCCHHHHHHHHHHHHHHCCCCEEEECCCCC-CHHHHHHHHHcCCCeEe
Confidence 355667766666542 233332 1 0 1234455556666655555678777753222 35677788888988887
Q ss_pred EccCCCc--------HHHHHHHHhCCCEEEE-------------------ecCCHHHHHHHHH-cCCCEEEE-ecCCCCc
Q 020013 93 VSWGEYS--------EELVLEAHSAGVKVVP-------------------QVGSFDEARKAVN-AGVDAIIV-QGREAGG 143 (332)
Q Consensus 93 ~~~g~~~--------~~~i~~~~~~g~~v~~-------------------~v~s~~~a~~a~~-~g~D~ivv-~G~eaGG 143 (332)
+.....| .++++.++..|+.|=. ..+++++|+...+ .|+|.+-+ .|.-=|-
T Consensus 103 ~DgS~lp~eeNi~~T~evv~~Ah~~gv~VEaElG~igg~ed~~~~~~~~~~~T~peea~~Fv~~TgvD~LAvaiGt~HG~ 182 (286)
T PRK12738 103 IDGSHFPFAENVKLVKSVVDFCHSQDCSVEAELGRLGGVEDDMSVDAESAFLTDPQEAKRFVELTGVDSLAVAIGTAHGL 182 (286)
T ss_pred ecCCCCCHHHHHHHHHHHHHHHHHcCCeEEEEEEeeCCccCCcccccchhcCCCHHHHHHHHHHhCCCEEEeccCcccCC
Confidence 7633323 2445566666665411 1357888888764 69999876 3432122
Q ss_pred ccCCCCchhhhHHHHHHHhCCCCCcEEeecCcCC-HHHHHHHHHcCcceeeeccccccC
Q 020013 144 HVIGQDGLISLLPMVVDLIGDRDIPIIAAGGIVD-ARGYVAALSLGAQGICLGTRFVAS 201 (332)
Q Consensus 144 h~~~~~~~~~ll~~i~~~~~~~~iPviaaGGI~~-~~~v~~al~~GA~gV~~GT~fl~t 201 (332)
....+.-.+.++.++.+.+ ++|++.-||=+. .+++.+++.+|..-|=++|.+..+
T Consensus 183 Y~~~p~Ldfd~l~~I~~~~---~vPLVLHGgSG~~~e~~~kai~~GI~KiNi~T~l~~a 238 (286)
T PRK12738 183 YSKTPKIDFQRLAEIREVV---DVPLVLHGASDVPDEFVRRTIELGVTKVNVATELKIA 238 (286)
T ss_pred CCCCCcCCHHHHHHHHHHh---CCCEEEeCCCCCCHHHHHHHHHcCCeEEEeCcHHHHH
Confidence 2212334588999999988 799998775433 577889999999999999986544
|
|
| >PRK13586 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional | Back alignment and domain information |
|---|
Probab=96.90 E-value=0.0044 Score=55.61 Aligned_cols=86 Identities=21% Similarity=0.169 Sum_probs=61.2
Q ss_pred HHHHHHHHHcCCCEEEEecCCCC-cccCCCCchhhhHHHHHHHhCCCCCcEEeecCcCCHHHHHHHHHcCcceeeecccc
Q 020013 120 FDEARKAVNAGVDAIIVQGREAG-GHVIGQDGLISLLPMVVDLIGDRDIPIIAAGGIVDARGYVAALSLGAQGICLGTRF 198 (332)
Q Consensus 120 ~~~a~~a~~~g~D~ivv~G~eaG-Gh~~~~~~~~~ll~~i~~~~~~~~iPviaaGGI~~~~~v~~al~~GA~gV~~GT~f 198 (332)
.+.|+...+.|+|.+.+---++- |+ .....++.++.+.. -.|+...|||.+.+++.+++.+||+-|++||..
T Consensus 33 ~~~a~~~~~~ga~~lhivDLd~a~~~----~~n~~~i~~i~~~~---~~~v~vGGGIrs~e~~~~~l~~Ga~kvvigt~a 105 (232)
T PRK13586 33 IEIASKLYNEGYTRIHVVDLDAAEGV----GNNEMYIKEISKIG---FDWIQVGGGIRDIEKAKRLLSLDVNALVFSTIV 105 (232)
T ss_pred HHHHHHHHHCCCCEEEEEECCCcCCC----cchHHHHHHHHhhC---CCCEEEeCCcCCHHHHHHHHHCCCCEEEECchh
Confidence 35566666789998876433211 22 12356777777632 249999999999999999999999999999998
Q ss_pred ccCccCCCCHHHHHHHhcC
Q 020013 199 VASEESYAHPEYKRKLVEM 217 (332)
Q Consensus 199 l~t~Es~~~~~~k~~~~~~ 217 (332)
+..+| .+++...+-
T Consensus 106 ~~~p~-----~~~~~~~~~ 119 (232)
T PRK13586 106 FTNFN-----LFHDIVREI 119 (232)
T ss_pred hCCHH-----HHHHHHHHh
Confidence 87654 455555443
|
|
| >PRK08610 fructose-bisphosphate aldolase; Reviewed | Back alignment and domain information |
|---|
Probab=96.87 E-value=0.15 Score=47.10 Aligned_cols=176 Identities=15% Similarity=0.150 Sum_probs=109.7
Q ss_pred CCCcHHHHHHHHhCC---Cceeec-CC----CCCC-HHHHHHHHHHHHhhcC--CcEEEEeecCCCCHHHHHHHHhcCCc
Q 020013 21 DISGPELVAAVANAG---GLGLLR-AP----DWEA-PDYLRDLIRKTRSLTE--RPFGVGVVLAFPHNENIKAILSEKVA 89 (332)
Q Consensus 21 g~s~~~la~avs~aG---glG~i~-~~----~~~~-~e~~~~~i~~~r~~~~--~p~gvnl~~~~~~~~~~~~~~~~~~~ 89 (332)
.+.+.+.+.+|-+|- ..++|- .. .+.. .+.+...++.+.+..+ .|+.+++=--. +.+.+..+++.|..
T Consensus 24 N~~n~e~~~avi~AAee~~sPvIl~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~vPV~lHLDHg~-~~e~i~~ai~~Gft 102 (286)
T PRK08610 24 NLNNLEFTQAILEASQEENAPVILGVSEGAARYMSGFYTVVKMVEGLMHDLNITIPVAIHLDHGS-SFEKCKEAIDAGFT 102 (286)
T ss_pred EECCHHHHHHHHHHHHHHCCCEEEEcCccHHhhcCcHHHHHHHHHHHHHHcCCCCCEEEECCCCC-CHHHHHHHHHcCCC
Confidence 356777776665542 233331 10 1222 3445555555544433 58877753222 35677788888988
Q ss_pred EEEEccCCCc--------HHHHHHHHhCCCEEEE-----------------ecCCHHHHHHHHH-cCCCEEEE-ecCCCC
Q 020013 90 VLQVSWGEYS--------EELVLEAHSAGVKVVP-----------------QVGSFDEARKAVN-AGVDAIIV-QGREAG 142 (332)
Q Consensus 90 ~I~~~~g~~~--------~~~i~~~~~~g~~v~~-----------------~v~s~~~a~~a~~-~g~D~ivv-~G~eaG 142 (332)
.|-+.....| .++++.++..|+.|=. ..+++++|+...+ .|+|.+-+ .|.-=|
T Consensus 103 SVM~DgS~l~~eeNi~~T~~vve~Ah~~gv~VEaElG~vgg~ed~~~~~~~~yT~peea~~Fv~~TgvD~LAvaiGt~HG 182 (286)
T PRK08610 103 SVMIDASHSPFEENVATTKKVVEYAHEKGVSVEAELGTVGGQEDDVVADGIIYADPKECQELVEKTGIDALAPALGSVHG 182 (286)
T ss_pred EEEEeCCCCCHHHHHHHHHHHHHHHHHcCCEEEEEEeccCCccCCCCCcccccCCHHHHHHHHHHHCCCEEEeecccccc
Confidence 8877633322 2445566666665421 1358889988765 69998876 233212
Q ss_pred cccCCCCchhhhHHHHHHHhCCCCCcEEeecCcCCH-HHHHHHHHcCcceeeecccccc
Q 020013 143 GHVIGQDGLISLLPMVVDLIGDRDIPIIAAGGIVDA-RGYVAALSLGAQGICLGTRFVA 200 (332)
Q Consensus 143 Gh~~~~~~~~~ll~~i~~~~~~~~iPviaaGGI~~~-~~v~~al~~GA~gV~~GT~fl~ 200 (332)
-..+.+.-.+.++.++.+.+ ++|++.-||=+.+ +++.+++..|..-|=++|.+-.
T Consensus 183 ~Y~~~p~Ld~~~L~~I~~~~---~vPLVLHGgSG~~~e~~~~ai~~GI~KiNi~T~l~~ 238 (286)
T PRK08610 183 PYKGEPKLGFKEMEEIGLST---GLPLVLHGGTGIPTKDIQKAIPFGTAKINVNTENQI 238 (286)
T ss_pred ccCCCCCCCHHHHHHHHHHH---CCCEEEeCCCCCCHHHHHHHHHCCCeEEEeccHHHH
Confidence 12112234588999999887 7999998876666 7789999999999999998643
|
|
| >PRK14114 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional | Back alignment and domain information |
|---|
Probab=96.87 E-value=0.0056 Score=55.24 Aligned_cols=78 Identities=14% Similarity=0.123 Sum_probs=58.5
Q ss_pred CCH-HHHHHHHHcCCCEEEEecCCC--CcccCCCCchhhhHHHHHHHhCCCCCcEEeecCcCCHHHHHHHHHcCcceeee
Q 020013 118 GSF-DEARKAVNAGVDAIIVQGREA--GGHVIGQDGLISLLPMVVDLIGDRDIPIIAAGGIVDARGYVAALSLGAQGICL 194 (332)
Q Consensus 118 ~s~-~~a~~a~~~g~D~ivv~G~ea--GGh~~~~~~~~~ll~~i~~~~~~~~iPviaaGGI~~~~~v~~al~~GA~gV~~ 194 (332)
.++ +.|+...+.|+|.+.+---++ .|+ ...+.++.++.+.+ .|+...|||.+.+++..++.+||+-|++
T Consensus 30 ~dP~~~A~~~~~~ga~~lhivDLd~a~~g~----~~n~~~i~~i~~~~----~~v~vGGGIrs~e~~~~~l~~Ga~rvvi 101 (241)
T PRK14114 30 KDPAELVEKLIEEGFTLIHVVDLSKAIENS----VENLPVLEKLSEFA----EHIQIGGGIRSLDYAEKLRKLGYRRQIV 101 (241)
T ss_pred CCHHHHHHHHHHCCCCEEEEEECCCcccCC----cchHHHHHHHHhhc----CcEEEecCCCCHHHHHHHHHCCCCEEEE
Confidence 344 446666778999887743321 122 23467788887754 6999999999999999999999999999
Q ss_pred ccccccCcc
Q 020013 195 GTRFVASEE 203 (332)
Q Consensus 195 GT~fl~t~E 203 (332)
||..+..+|
T Consensus 102 gT~a~~~p~ 110 (241)
T PRK14114 102 SSKVLEDPS 110 (241)
T ss_pred CchhhCCHH
Confidence 999876644
|
|
| >TIGR01919 hisA-trpF 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase/N-(5'phosphoribosyl)anthranilate isomerase | Back alignment and domain information |
|---|
Probab=96.87 E-value=0.0045 Score=55.95 Aligned_cols=71 Identities=24% Similarity=0.194 Sum_probs=53.3
Q ss_pred HHHHHHcCCCEEEE---ecCCCCcccCCCCchhhhHHHHHHHhCCCCCcEEeecCcCCHHHHHHHHHcCcceeeeccccc
Q 020013 123 ARKAVNAGVDAIIV---QGREAGGHVIGQDGLISLLPMVVDLIGDRDIPIIAAGGIVDARGYVAALSLGAQGICLGTRFV 199 (332)
Q Consensus 123 a~~a~~~g~D~ivv---~G~eaGGh~~~~~~~~~ll~~i~~~~~~~~iPviaaGGI~~~~~v~~al~~GA~gV~~GT~fl 199 (332)
++...+.|++.+-+ .+.+ |. .....++.++.+.+ .+|+...|||.+.+++..++.+||+-|++||..+
T Consensus 37 a~~~~~~g~~~lhivDLd~a~--g~----~~n~~~i~~i~~~~---~~~v~vgGGIrs~e~~~~~l~~Ga~~vvigT~a~ 107 (243)
T TIGR01919 37 AKWWEQGGAEWIHLVDLDAAF--GG----GNNEMMLEEVVKLL---VVVEELSGGRRDDSSLRAALTGGRARVNGGTAAL 107 (243)
T ss_pred HHHHHhCCCeEEEEEECCCCC--CC----cchHHHHHHHHHHC---CCCEEEcCCCCCHHHHHHHHHcCCCEEEECchhh
Confidence 34455566665554 3443 21 12366888888776 6899999999999999999999999999999988
Q ss_pred cCc
Q 020013 200 ASE 202 (332)
Q Consensus 200 ~t~ 202 (332)
..+
T Consensus 108 ~~p 110 (243)
T TIGR01919 108 ENP 110 (243)
T ss_pred CCH
Confidence 643
|
This model represents a bifunctional protein posessing both hisA (1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase) and trpF (N-(5'phosphoribosyl)anthranilate isomerase) activities. Thus, it is involved in both the histidine and tryptophan biosynthetic pathways. Enzymes with this property have been described only in the Actinobacteria (High-GC gram-positive). The enzyme is closely related to the monofunctional HisA proteins (TIGR00007) and in Actinobacteria, the classical monofunctional TrpF is generally absent. |
| >PF01081 Aldolase: KDPG and KHG aldolase; InterPro: IPR000887 4-Hydroxy-2-oxoglutarate aldolase (4 | Back alignment and domain information |
|---|
Probab=96.86 E-value=0.032 Score=48.62 Aligned_cols=117 Identities=19% Similarity=0.255 Sum_probs=74.4
Q ss_pred HHHHHHHhcCCcEEEEccCCC-cHHHHHHHHh--CCCEEE-EecCCHHHHHHHHHcCCCEEEEecCCCCcccCCCCchhh
Q 020013 78 ENIKAILSEKVAVLQVSWGEY-SEELVLEAHS--AGVKVV-PQVGSFDEARKAVNAGVDAIIVQGREAGGHVIGQDGLIS 153 (332)
Q Consensus 78 ~~~~~~~~~~~~~I~~~~g~~-~~~~i~~~~~--~g~~v~-~~v~s~~~a~~a~~~g~D~ivv~G~eaGGh~~~~~~~~~ 153 (332)
+..+.+.+.|++++.+.+..+ ..+.++.+++ .++.+. .+|.+.++++.+.++|+++++--+ ....
T Consensus 24 ~~~~al~~gGi~~iEiT~~t~~a~~~I~~l~~~~p~~~vGAGTV~~~e~a~~a~~aGA~FivSP~-----------~~~~ 92 (196)
T PF01081_consen 24 PIAEALIEGGIRAIEITLRTPNALEAIEALRKEFPDLLVGAGTVLTAEQAEAAIAAGAQFIVSPG-----------FDPE 92 (196)
T ss_dssp HHHHHHHHTT--EEEEETTSTTHHHHHHHHHHHHTTSEEEEES--SHHHHHHHHHHT-SEEEESS-------------HH
T ss_pred HHHHHHHHCCCCEEEEecCCccHHHHHHHHHHHCCCCeeEEEeccCHHHHHHHHHcCCCEEECCC-----------CCHH
Confidence 456777889999999886543 2356665554 356655 468899999999999999998622 1233
Q ss_pred hHHHHHHHhCCCCCcEEeecCcCCHHHHHHHHHcCcceeeeccccccCccCCCCHHHHHHHhc
Q 020013 154 LLPMVVDLIGDRDIPIIAAGGIVDARGYVAALSLGAQGICLGTRFVASEESYAHPEYKRKLVE 216 (332)
Q Consensus 154 ll~~i~~~~~~~~iPviaaGGI~~~~~v~~al~~GA~gV~~GT~fl~t~Es~~~~~~k~~~~~ 216 (332)
++....+. ++|++. |+.|+.++..++.+|++-|-+ +.-+.-.-..|-+.|..
T Consensus 93 v~~~~~~~----~i~~iP--G~~TptEi~~A~~~G~~~vK~-----FPA~~~GG~~~ik~l~~ 144 (196)
T PF01081_consen 93 VIEYAREY----GIPYIP--GVMTPTEIMQALEAGADIVKL-----FPAGALGGPSYIKALRG 144 (196)
T ss_dssp HHHHHHHH----TSEEEE--EESSHHHHHHHHHTT-SEEEE-----TTTTTTTHHHHHHHHHT
T ss_pred HHHHHHHc----CCcccC--CcCCHHHHHHHHHCCCCEEEE-----ecchhcCcHHHHHHHhc
Confidence 44444432 688765 677999999999999998874 22222222566666665
|
1.3.16 from EC) (KHG-aldolase) catalyzes the interconversion of 4-hydroxy-2-oxoglutarate into pyruvate and glyoxylate. Phospho-2-dehydro-3-deoxygluconate aldolase (4.1.2.14 from EC) (KDPG-aldolase) catalyzes the interconversion of 6-phospho-2-dehydro-3-deoxy-D-gluconate into pyruvate and glyceraldehyde 3-phosphate. These two enzymes are structurally and functionally related []. They are both homotrimeric proteins of approximately 220 amino-acid residues. They are class I aldolases whose catalytic mechanism involves the formation of a Schiff-base intermediate between the substrate and the epsilon-amino group of a lysine residue. In both enzymes, an arginine is required for catalytic activity.; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 3VCR_A 1FQ0_A 1EUN_A 1EUA_B 1FWR_A 2C0A_B 1WBH_A 1WAU_A 2YW3_B 2YW4_A .... |
| >PLN02617 imidazole glycerol phosphate synthase hisHF | Back alignment and domain information |
|---|
Probab=96.83 E-value=0.0043 Score=62.25 Aligned_cols=78 Identities=19% Similarity=0.238 Sum_probs=60.6
Q ss_pred HHHHHHHHcCCCEEEEecCCCC--cccCCCCchhhhHHHHHHHhCCCCCcEEeecCcCCH-----------HHHHHHHHc
Q 020013 121 DEARKAVNAGVDAIIVQGREAG--GHVIGQDGLISLLPMVVDLIGDRDIPIIAAGGIVDA-----------RGYVAALSL 187 (332)
Q Consensus 121 ~~a~~a~~~g~D~ivv~G~eaG--Gh~~~~~~~~~ll~~i~~~~~~~~iPviaaGGI~~~-----------~~v~~al~~ 187 (332)
+.|+...+.|+|-|.+-.-++- |+. .....+.++.++.+.+ .+|+-+.|||.+- +++.++|.+
T Consensus 271 e~a~~y~~~Gadel~~~Di~~~~~~~~-~~~~~~~~i~~i~~~~---~ip~~vGGGIr~~~d~~~~~~~~~e~~~~~l~~ 346 (538)
T PLN02617 271 ELAGQYYKDGADEVAFLNITGFRDFPL-GDLPMLEVLRRASENV---FVPLTVGGGIRDFTDANGRYYSSLEVASEYFRS 346 (538)
T ss_pred HHHHHHHHcCCCEEEEEECCCCcCCcc-cchhHHHHHHHHHhhC---CCCEEEcCCccccccccccccchHHHHHHHHHc
Confidence 4566777899999988655431 221 2234577888888877 7999999999997 668999999
Q ss_pred CcceeeeccccccCc
Q 020013 188 GAQGICLGTRFVASE 202 (332)
Q Consensus 188 GA~gV~~GT~fl~t~ 202 (332)
|||-|.+||..+..+
T Consensus 347 GadkV~i~s~Av~~~ 361 (538)
T PLN02617 347 GADKISIGSDAVYAA 361 (538)
T ss_pred CCCEEEEChHHHhCh
Confidence 999999999877754
|
|
| >PRK12457 2-dehydro-3-deoxyphosphooctonate aldolase; Provisional | Back alignment and domain information |
|---|
Probab=96.80 E-value=0.27 Score=44.86 Aligned_cols=172 Identities=18% Similarity=0.167 Sum_probs=103.7
Q ss_pred ceecCCCCCCCCcHHHHHHHHhC-------CCceeecCCCCC-------------CHHHHHHHHHHHHhhcCCcEEEEee
Q 020013 12 GIVQAPLGPDISGPELVAAVANA-------GGLGLLRAPDWE-------------APDYLRDLIRKTRSLTERPFGVGVV 71 (332)
Q Consensus 12 Pii~apM~~g~s~~~la~avs~a-------GglG~i~~~~~~-------------~~e~~~~~i~~~r~~~~~p~gvnl~ 71 (332)
-||.+|-. +-+.+.+..+++. -|+.++.-+.|. ..++=.++++++++.++.|+-..+.
T Consensus 18 ~~iaGPCs--vEs~e~~~~iA~~lk~i~~~~g~~~~fK~sf~KapRTSp~sFqG~G~eeGL~iL~~vk~~~GlpvvTeV~ 95 (281)
T PRK12457 18 VLFGGINV--LESLDFTLDVCGEYVEVTRKLGIPFVFKASFDKANRSSIHSYRGVGLDEGLRIFEEVKARFGVPVITDVH 95 (281)
T ss_pred EEEecCCc--ccCHHHHHHHHHHHHHHHHHCCCcEEeeeccCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCceEEEeC
Confidence 36667875 6666665555542 345455331121 1134456778888877777766655
Q ss_pred cCCCCHHHHHHHHhcCCcEEEEcc-CCCcHHHHHHHHhCCCEEEEec---CCHHHHHH----HHHcCCCEEEE--ecCCC
Q 020013 72 LAFPHNENIKAILSEKVAVLQVSW-GEYSEELVLEAHSAGVKVVPQV---GSFDEARK----AVNAGVDAIIV--QGREA 141 (332)
Q Consensus 72 ~~~~~~~~~~~~~~~~~~~I~~~~-g~~~~~~i~~~~~~g~~v~~~v---~s~~~a~~----a~~~g~D~ivv--~G~ea 141 (332)
- .++++.+.+. +|++++.. ..-.-++++.+.+.|.+|..+= .++++-.. ....|-.-|++ .|...
T Consensus 96 ~----~~~~~~~ae~-vDilQIgAr~~rntdLL~a~~~t~kpV~lKrGqf~s~~e~~~aae~i~~~Gn~~vilcERG~~f 170 (281)
T PRK12457 96 E----VEQAAPVAEV-ADVLQVPAFLARQTDLVVAIAKTGKPVNIKKPQFMSPTQMKHVVSKCREAGNDRVILCERGSSF 170 (281)
T ss_pred C----HHHHHHHhhh-CeEEeeCchhhchHHHHHHHhccCCeEEecCCCcCCHHHHHHHHHHHHHcCCCeEEEEeCCCCC
Confidence 3 6778888887 99999963 2223367777777788887543 46776544 34557665555 34432
Q ss_pred CcccCCCCchhhhHHHHHHHhCCCCCcEEee---------------cCcCC--HHHHHHHHHcCcceeee
Q 020013 142 GGHVIGQDGLISLLPMVVDLIGDRDIPIIAA---------------GGIVD--ARGYVAALSLGAQGICL 194 (332)
Q Consensus 142 GGh~~~~~~~~~ll~~i~~~~~~~~iPviaa---------------GGI~~--~~~v~~al~~GA~gV~~ 194 (332)
|.. ....++..+|.+++... ..|||.. ||..+ +.-+.++++.||||+.+
T Consensus 171 -gy~-~~~~D~~~ip~mk~~~t--~lPVi~DpSHsvq~p~~~g~~s~G~re~v~~larAAvA~GaDGl~i 236 (281)
T PRK12457 171 -GYD-NLVVDMLGFRQMKRTTG--DLPVIFDVTHSLQCRDPLGAASGGRRRQVLDLARAGMAVGLAGLFL 236 (281)
T ss_pred -CCC-CcccchHHHHHHHhhCC--CCCEEEeCCccccCCCCCCCCCCCCHHHHHHHHHHHHHhCCCEEEE
Confidence 222 12345667777776421 6899874 33311 11245778899999998
|
|
| >PF00478 IMPDH: IMP dehydrogenase / GMP reductase domain; InterPro: IPR001093 Synonym(s): Inosine-5'-monophosphate dehydrogenase, Inosinic acid dehydrogenase; Synonym(s): Guanosine 5'-monophosphate oxidoreductase This entry contains two related enzymes IMP dehydrogenase and GMP reducatase | Back alignment and domain information |
|---|
Probab=96.79 E-value=0.0047 Score=58.48 Aligned_cols=78 Identities=31% Similarity=0.590 Sum_probs=55.7
Q ss_pred CCEEEEecC----CHHHHHHHHHcCCCEEEEecCCCCcccCCCCchhhhHHHHHHHhCCCCCcEEeecCcCCHHHHHHHH
Q 020013 110 GVKVVPQVG----SFDEARKAVNAGVDAIIVQGREAGGHVIGQDGLISLLPMVVDLIGDRDIPIIAAGGIVDARGYVAAL 185 (332)
Q Consensus 110 g~~v~~~v~----s~~~a~~a~~~g~D~ivv~G~eaGGh~~~~~~~~~ll~~i~~~~~~~~iPviaaGGI~~~~~v~~al 185 (332)
...|...++ +.+.+..+.++|+|+|+++... ||. ......++.+++..+ ++||| +|.|.|++.+..++
T Consensus 96 ~l~V~aavg~~~~~~er~~~L~~agvD~ivID~a~--g~s---~~~~~~ik~ik~~~~--~~~vi-aGNV~T~e~a~~L~ 167 (352)
T PF00478_consen 96 RLLVAAAVGTRDDDFERAEALVEAGVDVIVIDSAH--GHS---EHVIDMIKKIKKKFP--DVPVI-AGNVVTYEGAKDLI 167 (352)
T ss_dssp CBCEEEEEESSTCHHHHHHHHHHTT-SEEEEE-SS--TTS---HHHHHHHHHHHHHST--TSEEE-EEEE-SHHHHHHHH
T ss_pred cceEEEEecCCHHHHHHHHHHHHcCCCEEEccccC--ccH---HHHHHHHHHHHHhCC--CceEE-ecccCCHHHHHHHH
Confidence 344555443 2456677788999999998652 443 344677888888774 68887 68899999999999
Q ss_pred HcCcceeeec
Q 020013 186 SLGAQGICLG 195 (332)
Q Consensus 186 ~~GA~gV~~G 195 (332)
.+|||+|-+|
T Consensus 168 ~aGad~vkVG 177 (352)
T PF00478_consen 168 DAGADAVKVG 177 (352)
T ss_dssp HTT-SEEEES
T ss_pred HcCCCEEEEe
Confidence 9999999987
|
These enzymes adopt a TIM barrel structure. IMP dehydrogenase (1.1.1.205 from EC) (IMPDH) catalyzes the rate-limiting reaction of de novo GTP biosynthesis, the NAD-dependent reduction of IMP into XMP []. |
| >PRK05458 guanosine 5'-monophosphate oxidoreductase; Provisional | Back alignment and domain information |
|---|
Probab=96.79 E-value=0.035 Score=52.20 Aligned_cols=123 Identities=14% Similarity=0.191 Sum_probs=76.2
Q ss_pred CCcEEEEeecCCCCHHHHHHHHhcCCcEEEEccCCCcHHHHHHHHh---CCCEEEEecC-C---HHHHHHHHHcCC--CE
Q 020013 63 ERPFGVGVVLAFPHNENIKAILSEKVAVLQVSWGEYSEELVLEAHS---AGVKVVPQVG-S---FDEARKAVNAGV--DA 133 (332)
Q Consensus 63 ~~p~gvnl~~~~~~~~~~~~~~~~~~~~I~~~~g~~~~~~i~~~~~---~g~~v~~~v~-s---~~~a~~a~~~g~--D~ 133 (332)
..||-+|=|...-+.+....+.+.|--.+..-+ .+++.....++ .+..+...++ + .+++....++|+ |+
T Consensus 37 ~~P~~inAM~t~iN~~LA~~a~~~G~~~~~~k~--~~e~~~~~~r~~~~~~l~v~~~vg~~~~~~~~~~~Lv~ag~~~d~ 114 (326)
T PRK05458 37 KLPVVPANMQTIIDEKIAEWLAENGYFYIMHRF--DPEARIPFIKDMHEQGLIASISVGVKDDEYDFVDQLAAEGLTPEY 114 (326)
T ss_pred cCcEEEecccchhHHHHHHHHHHcCCEEEEecC--CHHHHHHHHHhccccccEEEEEecCCHHHHHHHHHHHhcCCCCCE
Confidence 357777766432223444555555544443322 34443433333 3454444443 2 355667778855 99
Q ss_pred EEEecCCCCcccCCCCchhhhHHHHHHHhCCCCCcEEeecCcCCHHHHHHHHHcCcceeeec
Q 020013 134 IIVQGREAGGHVIGQDGLISLLPMVVDLIGDRDIPIIAAGGIVDARGYVAALSLGAQGICLG 195 (332)
Q Consensus 134 ivv~G~eaGGh~~~~~~~~~ll~~i~~~~~~~~iPviaaGGI~~~~~v~~al~~GA~gV~~G 195 (332)
|.++... ||. ....++++++++..+ ++| +.+|.|.|.+++..+..+|+|++.+|
T Consensus 115 i~iD~a~--gh~---~~~~e~I~~ir~~~p--~~~-vi~g~V~t~e~a~~l~~aGad~i~vg 168 (326)
T PRK05458 115 ITIDIAH--GHS---DSVINMIQHIKKHLP--ETF-VIAGNVGTPEAVRELENAGADATKVG 168 (326)
T ss_pred EEEECCC--Cch---HHHHHHHHHHHhhCC--CCe-EEEEecCCHHHHHHHHHcCcCEEEEC
Confidence 9998764 553 345677888887663 345 45677999999999999999999877
|
|
| >cd00956 Transaldolase_FSA Transaldolase-like fructose-6-phosphate aldolases (FSA) found in bacteria and archaea, which are member of the MipB/TalC subfamily of class I aldolases | Back alignment and domain information |
|---|
Probab=96.79 E-value=0.076 Score=46.92 Aligned_cols=139 Identities=18% Similarity=0.201 Sum_probs=85.8
Q ss_pred HHHHHHHhhcCCcEEEEeecCCCCHHHHHH---HHhc-CCcEEEEccCCCcHHHHHHHHhCCCEEEE-ecCCHHHHHHHH
Q 020013 53 DLIRKTRSLTERPFGVGVVLAFPHNENIKA---ILSE-KVAVLQVSWGEYSEELVLEAHSAGVKVVP-QVGSFDEARKAV 127 (332)
Q Consensus 53 ~~i~~~r~~~~~p~gvnl~~~~~~~~~~~~---~~~~-~~~~I~~~~g~~~~~~i~~~~~~g~~v~~-~v~s~~~a~~a~ 127 (332)
+.++++++..+.|+-+-+...+ .++.++. +.+. +--+|-+..-....+.++.+++.|+++-. .|-|.+++..+.
T Consensus 41 ~~~~~i~~~~~~~v~~qv~~~~-~e~~i~~a~~l~~~~~~~~iKIP~T~~gl~ai~~L~~~gi~v~~T~V~s~~Qa~~Aa 119 (211)
T cd00956 41 AVLKEICEIIDGPVSAQVVSTD-AEGMVAEARKLASLGGNVVVKIPVTEDGLKAIKKLSEEGIKTNVTAIFSAAQALLAA 119 (211)
T ss_pred HHHHHHHHhcCCCEEEEEEeCC-HHHHHHHHHHHHHhCCCEEEEEcCcHhHHHHHHHHHHcCCceeeEEecCHHHHHHHH
Confidence 3445555554566666655332 2333333 3333 33344454322234678888888998764 477999999999
Q ss_pred HcCCCEEEE-ecC-CCCcccCCCCchhhhHHHHHHHhCCCCC-cEEeecCcCCHHHHHHHHHcCcceeeeccc
Q 020013 128 NAGVDAIIV-QGR-EAGGHVIGQDGLISLLPMVVDLIGDRDI-PIIAAGGIVDARGYVAALSLGAQGICLGTR 197 (332)
Q Consensus 128 ~~g~D~ivv-~G~-eaGGh~~~~~~~~~ll~~i~~~~~~~~i-PviaaGGI~~~~~v~~al~~GA~gV~~GT~ 197 (332)
++|+++|-. -|+ +.-|+ ..+.++.++.+.+...+. .-|.+.|+.++.++.+++.+|||.|-+.-.
T Consensus 120 ~AGA~yvsP~vgR~~~~g~-----dg~~~i~~i~~~~~~~~~~tkil~As~r~~~ei~~a~~~Gad~vTv~~~ 187 (211)
T cd00956 120 KAGATYVSPFVGRIDDLGG-----DGMELIREIRTIFDNYGFDTKILAASIRNPQHVIEAALAGADAITLPPD 187 (211)
T ss_pred HcCCCEEEEecChHhhcCC-----CHHHHHHHHHHHHHHcCCCceEEecccCCHHHHHHHHHcCCCEEEeCHH
Confidence 999999653 232 11111 235666666665533232 355667788999999999999999987433
|
FSA catalyze an aldol cleavage of fructose 6-phosphate and do not utilize fructose, fructose 1-phosphate, fructose 1,6-phosphate, or dihydroxyacetone phosphate. The enzymes belong to the transaldolase family that serves in transfer reactions in the pentose phosphate cycle, and are more distantly related to fructose 1,6-bisphosphate aldolase. |
| >PRK06843 inosine 5-monophosphate dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=96.75 E-value=0.0055 Score=59.11 Aligned_cols=68 Identities=24% Similarity=0.444 Sum_probs=53.0
Q ss_pred HHHHHHHHHcCCCEEEEecCCCCcccCCCCchhhhHHHHHHHhCCCCCcEEeecCcCCHHHHHHHHHcCcceeeec
Q 020013 120 FDEARKAVNAGVDAIIVQGREAGGHVIGQDGLISLLPMVVDLIGDRDIPIIAAGGIVDARGYVAALSLGAQGICLG 195 (332)
Q Consensus 120 ~~~a~~a~~~g~D~ivv~G~eaGGh~~~~~~~~~ll~~i~~~~~~~~iPviaaGGI~~~~~v~~al~~GA~gV~~G 195 (332)
.+++..+.++|+|+|+++... ||. .....+++++++.++ +++ +.+|+|.|.+++..++.+|||+|.+|
T Consensus 155 ~~~v~~lv~aGvDvI~iD~a~--g~~---~~~~~~v~~ik~~~p--~~~-vi~g~V~T~e~a~~l~~aGaD~I~vG 222 (404)
T PRK06843 155 IERVEELVKAHVDILVIDSAH--GHS---TRIIELVKKIKTKYP--NLD-LIAGNIVTKEAALDLISVGADCLKVG 222 (404)
T ss_pred HHHHHHHHhcCCCEEEEECCC--CCC---hhHHHHHHHHHhhCC--CCc-EEEEecCCHHHHHHHHHcCCCEEEEC
Confidence 367788889999999997653 442 345677888887653 455 45688889999999999999999877
|
|
| >PF04309 G3P_antiterm: Glycerol-3-phosphate responsive antiterminator; InterPro: IPR006699 Glycerol enters bacterial cells via facilitated diffusion, an energy-independent transport process catalysed by the glycerol transport facilitator GlpF, an integral membrane protein of the aquaporin family | Back alignment and domain information |
|---|
Probab=96.73 E-value=0.012 Score=50.22 Aligned_cols=129 Identities=20% Similarity=0.328 Sum_probs=80.0
Q ss_pred HHHHHHHHHHhhcCCcEEEEeecC---CCCHHHHHHHHhcC-CcEEEEccCCCcHHHHHHHHhCCCEEEEec---C--CH
Q 020013 50 YLRDLIRKTRSLTERPFGVGVVLA---FPHNENIKAILSEK-VAVLQVSWGEYSEELVLEAHSAGVKVVPQV---G--SF 120 (332)
Q Consensus 50 ~~~~~i~~~r~~~~~p~gvnl~~~---~~~~~~~~~~~~~~-~~~I~~~~g~~~~~~i~~~~~~g~~v~~~v---~--s~ 120 (332)
.+.+.++++++. ++..-||+=.- ..++.-++.+.+.. +|.|... -...++..++.|...+--+ . +.
T Consensus 32 ~l~~~v~~~~~~-gK~vfVHiDli~Gl~~D~~~i~~L~~~~~~dGIIST----k~~~i~~Ak~~gl~tIqRiFliDS~al 106 (175)
T PF04309_consen 32 NLKDIVKRLKAA-GKKVFVHIDLIEGLSRDEAGIEYLKEYGKPDGIIST----KSNLIKRAKKLGLLTIQRIFLIDSSAL 106 (175)
T ss_dssp CHHHHHHHHHHT-T-EEEEECCGEETB-SSHHHHHHHHHTT--SEEEES----SHHHHHHHHHTT-EEEEEEE-SSHHHH
T ss_pred HHHHHHHHHHHc-CCEEEEEehhcCCCCCCHHHHHHHHHcCCCcEEEeC----CHHHHHHHHHcCCEEEEEeeeecHHHH
Confidence 356677777764 44455554221 23466777777765 9998775 3568999999998766332 2 34
Q ss_pred HHHHH-HHHcCCCEEEEecCCCCcccCCCCchhhhHHHHHHHhC-CCCCcEEeecCcCCHHHHHHHHHcCcceeeeccc
Q 020013 121 DEARK-AVNAGVDAIIVQGREAGGHVIGQDGLISLLPMVVDLIG-DRDIPIIAAGGIVDARGYVAALSLGAQGICLGTR 197 (332)
Q Consensus 121 ~~a~~-a~~~g~D~ivv~G~eaGGh~~~~~~~~~ll~~i~~~~~-~~~iPviaaGGI~~~~~v~~al~~GA~gV~~GT~ 197 (332)
+.+.+ ..+..+|+|=+-. + .+|.+.+.+. ..++|+|++|=|.+.+++.++|+.||++|-....
T Consensus 107 ~~~~~~i~~~~PD~vEilP--------g------~~p~vi~~i~~~~~~PiIAGGLI~~~e~v~~al~aGa~aVSTS~~ 171 (175)
T PF04309_consen 107 ETGIKQIEQSKPDAVEILP--------G------VMPKVIKKIREETNIPIIAGGLIRTKEDVEEALKAGADAVSTSNK 171 (175)
T ss_dssp HHHHHHHHHHT-SEEEEES--------C------CHHHHHCCCCCCCSS-EEEESS--SHHHHHHHCCTTCEEEEE--H
T ss_pred HHHHHHHhhcCCCEEEEch--------H------HHHHHHHHHHHhcCCCEEeecccCCHHHHHHHHHcCCEEEEcCCh
Confidence 44333 4567999996621 1 2345544432 2379999999999999999999999999987654
|
Intracellular glycerol is usually converted to glycerol-3-P in an ATP-requiring phosphorylation reaction catalysed by glycerol kinase (GlpK). Glycerol-3-P, the inducer of the glpFK operon, is not a substrate for GlpF and hence remains entrapped in the cell where it is metabolized further. In some bacterial species, for example Bacillus firmus, glycerol-3-P activates the antiterminator GlpP []. In B. subtilis, glpF and glpK are organised in an operon followed by the glycerol-3-P dehydrogenase-encoding glpD gene and preceded by glpP coding for an antiterminator regulating the expression of glpFK, glpD and glpTQ. Their induction requires the inducer glycerol-3-P, which activates the antiterminator GlpP by allowing it to bind to the leader region of glpD and presumably also of glpFK and glpTQ mRNAs.; GO: 0006355 regulation of transcription, DNA-dependent, 0009607 response to biotic stimulus; PDB: 1VKF_A 3KTS_G. |
| >PF04131 NanE: Putative N-acetylmannosamine-6-phosphate epimerase; InterPro: IPR007260 This family represents a putative ManNAc-6-P-to-GlcNAc-6P epimerase in the N-acetylmannosamine (ManNAc) utilization pathway found mainly in pathogenic bacteria for the reaction: |
Back alignment and domain information |
|---|
Probab=96.65 E-value=0.063 Score=46.18 Aligned_cols=107 Identities=24% Similarity=0.314 Sum_probs=69.4
Q ss_pred cHHHHHHHHhCCC--ceeecCCCCCCHHHHHHHHHHHHhhcCCcEEEEeecCCCCHHHHHHHHhcCCcEEEEcc------
Q 020013 24 GPELVAAVANAGG--LGLLRAPDWEAPDYLRDLIRKTRSLTERPFGVGVVLAFPHNENIKAILSEKVAVLQVSW------ 95 (332)
Q Consensus 24 ~~~la~avs~aGg--lG~i~~~~~~~~e~~~~~i~~~r~~~~~p~gvnl~~~~~~~~~~~~~~~~~~~~I~~~~------ 95 (332)
+-+-+.++.++|. +.+=...+ ..|+.+.++++++|+.. .++ |-.-...+....+.+.|+|+|.+..
T Consensus 53 T~~ev~~l~~aGadIIAlDaT~R-~Rp~~l~~li~~i~~~~-~l~----MADist~ee~~~A~~~G~D~I~TTLsGYT~~ 126 (192)
T PF04131_consen 53 TLKEVDALAEAGADIIALDATDR-PRPETLEELIREIKEKY-QLV----MADISTLEEAINAAELGFDIIGTTLSGYTPY 126 (192)
T ss_dssp SHHHHHHHHHCT-SEEEEE-SSS-S-SS-HHHHHHHHHHCT-SEE----EEE-SSHHHHHHHHHTT-SEEE-TTTTSSTT
T ss_pred CHHHHHHHHHcCCCEEEEecCCC-CCCcCHHHHHHHHHHhC-cEE----eeecCCHHHHHHHHHcCCCEEEcccccCCCC
Confidence 5678889999884 22223322 33488899999998754 222 2222224556677889999998642
Q ss_pred --CC-CcHHHHHHHHhCCCEEEE--ecCCHHHHHHHHHcCCCEEEE
Q 020013 96 --GE-YSEELVLEAHSAGVKVVP--QVGSFDEARKAVNAGVDAIIV 136 (332)
Q Consensus 96 --g~-~~~~~i~~~~~~g~~v~~--~v~s~~~a~~a~~~g~D~ivv 136 (332)
+. |.-++++++.+.+++|+. .+++++++.++++.|++.|+|
T Consensus 127 t~~~~pD~~lv~~l~~~~~pvIaEGri~tpe~a~~al~~GA~aVVV 172 (192)
T PF04131_consen 127 TKGDGPDFELVRELVQADVPVIAEGRIHTPEQAAKALELGAHAVVV 172 (192)
T ss_dssp STTSSHHHHHHHHHHHTTSEEEEESS--SHHHHHHHHHTT-SEEEE
T ss_pred CCCCCCCHHHHHHHHhCCCcEeecCCCCCHHHHHHHHhcCCeEEEE
Confidence 11 223678888888999985 488999999999999999999
|
; GO: 0047465 N-acylglucosamine-6-phosphate 2-epimerase activity, 0006051 N-acetylmannosamine metabolic process; PDB: 1Y0E_B 3IGS_A 1YXY_A 3Q58_B. |
| >TIGR01362 KDO8P_synth 3-deoxy-8-phosphooctulonate synthase | Back alignment and domain information |
|---|
Probab=96.63 E-value=0.46 Score=42.91 Aligned_cols=171 Identities=18% Similarity=0.240 Sum_probs=103.1
Q ss_pred ceecCCCCCCCCcHHHHHHHHh----CC---CceeecCCCCC-------------CHHHHHHHHHHHHhhcCCcEEEEee
Q 020013 12 GIVQAPLGPDISGPELVAAVAN----AG---GLGLLRAPDWE-------------APDYLRDLIRKTRSLTERPFGVGVV 71 (332)
Q Consensus 12 Pii~apM~~g~s~~~la~avs~----aG---glG~i~~~~~~-------------~~e~~~~~i~~~r~~~~~p~gvnl~ 71 (332)
-+|.||-. +-+.+.+..+++ +| ++|.+.-++|. ..++=.++++++++.++.|+-..++
T Consensus 4 ~viAGPCs--vEs~e~~~~~A~~lk~~~~~~~~~~~fk~sf~KapRTsp~sFqG~G~eeGL~iL~~vk~~~glpvvTeV~ 81 (258)
T TIGR01362 4 FLIAGPCV--IESEDHALRVAEKLKELTSKLGVPFIFKSSFDKANRSSIHSFRGPGLEEGLKILQKVKEEFGVPILTDVH 81 (258)
T ss_pred eEEecCCc--ccCHHHHHHHHHHHHHHHHhcCCCeEEecccCCCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCceEEEeC
Confidence 47778875 666666555543 22 45444331221 1133456778888877777776655
Q ss_pred cCCCCHHHHHHHHhcCCcEEEEcc-CCCcHHHHHHHHhCCCEEEEe---cCCHHHHHH----HHHcCCCEEEE--ecCCC
Q 020013 72 LAFPHNENIKAILSEKVAVLQVSW-GEYSEELVLEAHSAGVKVVPQ---VGSFDEARK----AVNAGVDAIIV--QGREA 141 (332)
Q Consensus 72 ~~~~~~~~~~~~~~~~~~~I~~~~-g~~~~~~i~~~~~~g~~v~~~---v~s~~~a~~----a~~~g~D~ivv--~G~ea 141 (332)
- .++++.+.+. +|++++.. ..-.-++++.+-+.|.+|..+ ..++++-.. ....|-+-|++ .|...
T Consensus 82 ~----~~~~~~vae~-vDilQIgArn~rn~~LL~a~g~t~kpV~lKrG~~~t~~e~l~aaeyi~~~Gn~~viLcERG~tf 156 (258)
T TIGR01362 82 E----SSQCEPVAEV-VDIIQIPAFLCRQTDLLVAAAKTGRIVNVKKGQFLSPWDMKNVVEKVLSTGNKNILLCERGTSF 156 (258)
T ss_pred C----HHHHHHHHhh-CcEEEeCchhcchHHHHHHHhccCCeEEecCCCcCCHHHHHHHHHHHHHcCCCcEEEEeCCCCc
Confidence 3 5778888777 99999963 222336777777778888754 347776443 44567665555 45432
Q ss_pred CcccCCCCchhhhHHHHHHHhCCCCCcEEee---------------cCcCC--HHHHHHHHHcCcceeeec
Q 020013 142 GGHVIGQDGLISLLPMVVDLIGDRDIPIIAA---------------GGIVD--ARGYVAALSLGAQGICLG 195 (332)
Q Consensus 142 GGh~~~~~~~~~ll~~i~~~~~~~~iPviaa---------------GGI~~--~~~v~~al~~GA~gV~~G 195 (332)
|.. ....++..+|.+++. +.|||.. ||..+ +.-..+++++||||+.+=
T Consensus 157 -~y~-r~~~D~~~ip~~k~~----~~PVi~DpSHsvq~pg~~g~~s~G~r~~v~~la~AAvA~GaDGl~iE 221 (258)
T TIGR01362 157 -GYN-NLVVDMRSLPIMREL----GCPVIFDATHSVQQPGGLGGASGGLREFVPTLARAAVAVGIDGLFME 221 (258)
T ss_pred -CCC-CcccchhhhHHHHhc----CCCEEEeCCccccCCCCCCCCCCCcHHHHHHHHHHHHHhCCCEEEEE
Confidence 221 123456667776653 5899874 34321 112356788999999983
|
In Gram-negative bacteria, this is the first step in the biosynthesis of 3-deoxy-D-manno-octulosonate, part of the oligosaccharide core of lipopolysaccharide. |
| >cd00452 KDPG_aldolase KDPG and KHG aldolase | Back alignment and domain information |
|---|
Probab=96.60 E-value=0.05 Score=47.16 Aligned_cols=100 Identities=18% Similarity=0.236 Sum_probs=70.1
Q ss_pred HHHHHHHhcCCcEEEEccCCC-cHHHHHHHHhCC--CEEE-EecCCHHHHHHHHHcCCCEEEEecCCCCcccCCCCchhh
Q 020013 78 ENIKAILSEKVAVLQVSWGEY-SEELVLEAHSAG--VKVV-PQVGSFDEARKAVNAGVDAIIVQGREAGGHVIGQDGLIS 153 (332)
Q Consensus 78 ~~~~~~~~~~~~~I~~~~g~~-~~~~i~~~~~~g--~~v~-~~v~s~~~a~~a~~~g~D~ivv~G~eaGGh~~~~~~~~~ 153 (332)
+.++.+.+.|++.|++..-.+ ..+.++.+++.. +.+. ..+.+.+++..+.+.|+|+|.. ++. ...
T Consensus 20 ~~~~~l~~~G~~~vev~~~~~~~~~~i~~l~~~~~~~~iGag~v~~~~~~~~a~~~Ga~~i~~-----p~~------~~~ 88 (190)
T cd00452 20 ALAEALIEGGIRAIEITLRTPGALEAIRALRKEFPEALIGAGTVLTPEQADAAIAAGAQFIVS-----PGL------DPE 88 (190)
T ss_pred HHHHHHHHCCCCEEEEeCCChhHHHHHHHHHHHCCCCEEEEEeCCCHHHHHHHHHcCCCEEEc-----CCC------CHH
Confidence 456778888999999975332 234566666542 4444 3677899999999999999964 111 122
Q ss_pred hHHHHHHHhCCCCCcEEeecCcCCHHHHHHHHHcCcceeee
Q 020013 154 LLPMVVDLIGDRDIPIIAAGGIVDARGYVAALSLGAQGICL 194 (332)
Q Consensus 154 ll~~i~~~~~~~~iPviaaGGI~~~~~v~~al~~GA~gV~~ 194 (332)
++.. ++.. ++|++. |+.|.+++.+++.+|||-+.+
T Consensus 89 ~~~~-~~~~---~~~~i~--gv~t~~e~~~A~~~Gad~i~~ 123 (190)
T cd00452 89 VVKA-ANRA---GIPLLP--GVATPTEIMQALELGADIVKL 123 (190)
T ss_pred HHHH-HHHc---CCcEEC--CcCCHHHHHHHHHCCCCEEEE
Confidence 3332 2223 577776 888999999999999999997
|
This family belongs to the class I adolases whose reaction mechanism involves Schiff base formation between a substrate carbonyl and lysine residue in the active site. 2-keto-3-deoxy-6-phosphogluconate (KDPG) aldolase, is best known for its role in the Entner-Doudoroff pathway of bacteria, where it catalyzes the reversible cleavage of KDPG to pyruvate and glyceraldehyde-3-phosphate. 2-keto-4-hydroxyglutarate (KHG) aldolase, which has enzymatic specificity toward glyoxylate, forming KHG in the presence of pyruvate, and is capable of regulating glyoxylate levels in the glyoxylate bypass, an alternate pathway when bacteria are grown on acetate carbon sources. |
| >TIGR01305 GMP_reduct_1 guanosine monophosphate reductase, eukaryotic | Back alignment and domain information |
|---|
Probab=96.52 E-value=0.059 Score=50.51 Aligned_cols=108 Identities=16% Similarity=0.192 Sum_probs=69.0
Q ss_pred HHHHHHHhc-CCcEEEEccCCCcHHHHHHHHh----CCCEEEEecC----CHHHHHHHHHc--CCCEEEEecCCCCcccC
Q 020013 78 ENIKAILSE-KVAVLQVSWGEYSEELVLEAHS----AGVKVVPQVG----SFDEARKAVNA--GVDAIIVQGREAGGHVI 146 (332)
Q Consensus 78 ~~~~~~~~~-~~~~I~~~~g~~~~~~i~~~~~----~g~~v~~~v~----s~~~a~~a~~~--g~D~ivv~G~eaGGh~~ 146 (332)
+....+.+. +.-+++=++ .++++.+.+++ .+..+...++ +.+.+....++ ++|+|+++-. =||.
T Consensus 60 ~mA~~la~~g~~~~iHk~~--~~e~~~~~v~~~~~~~~~~~~vsvG~~~~d~er~~~L~~a~~~~d~iviD~A--hGhs- 134 (343)
T TIGR01305 60 EMAAALSQHSIFTAIHKHY--SVDEWKAFATNSSPDCLQNVAVSSGSSDNDLEKMTSILEAVPQLKFICLDVA--NGYS- 134 (343)
T ss_pred HHHHHHHHCCCeEEEeeCC--CHHHHHHHHHhhcccccceEEEEeccCHHHHHHHHHHHhcCCCCCEEEEECC--CCcH-
Confidence 334444443 345555554 34555655543 2333333443 23445556666 5999999744 2453
Q ss_pred CCCchhhhHHHHHHHhCCCCCcEEeecCcCCHHHHHHHHHcCcceeeec
Q 020013 147 GQDGLISLLPMVVDLIGDRDIPIIAAGGIVDARGYVAALSLGAQGICLG 195 (332)
Q Consensus 147 ~~~~~~~ll~~i~~~~~~~~iPviaaGGI~~~~~v~~al~~GA~gV~~G 195 (332)
......++.+++.. .-+.|.+|.|.|++++..++.+|||+|.+|
T Consensus 135 --~~~i~~ik~ir~~~---p~~~viaGNV~T~e~a~~Li~aGAD~ikVg 178 (343)
T TIGR01305 135 --EHFVEFVKLVREAF---PEHTIMAGNVVTGEMVEELILSGADIVKVG 178 (343)
T ss_pred --HHHHHHHHHHHhhC---CCCeEEEecccCHHHHHHHHHcCCCEEEEc
Confidence 34577788888876 346777899999999999999999999876
|
A deep split separates two families of GMP reductase. This family includes both eukaryotic and some proteobacterial sequences, while the other family contains other bacterial sequences. |
| >PLN03033 2-dehydro-3-deoxyphosphooctonate aldolase; Provisional | Back alignment and domain information |
|---|
Probab=96.50 E-value=0.31 Score=44.57 Aligned_cols=169 Identities=17% Similarity=0.174 Sum_probs=99.9
Q ss_pred eecCCCCCCCCcHHHHHHHHh----C---CCceeecCCCCC-------------CHHHHHHHHHHHHhhcCCcEEEEeec
Q 020013 13 IVQAPLGPDISGPELVAAVAN----A---GGLGLLRAPDWE-------------APDYLRDLIRKTRSLTERPFGVGVVL 72 (332)
Q Consensus 13 ii~apM~~g~s~~~la~avs~----a---GglG~i~~~~~~-------------~~e~~~~~i~~~r~~~~~p~gvnl~~ 72 (332)
+|.||-. +-+.+.+..+++ + -|+.++.-+.|. ..++=.++++++++.++.|+-..+.-
T Consensus 19 lIAGPC~--iEs~e~~~~~A~~lk~~~~~~g~~~i~kgsfkKApRTSp~sFrG~G~eeGL~iL~~vk~~~glpvvTeV~~ 96 (290)
T PLN03033 19 LLAGPNV--IESEEHILRMAKHIKDISTKLGLPLVFKSSFDKANRTSSKSFRGPGMAEGLKILEKVKVAYDLPIVTDVHE 96 (290)
T ss_pred EEecCCh--hcCHHHHHHHHHHHHHHHHhCCCcEEEEeeccCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCceEEeeCC
Confidence 6778875 666655554443 2 256555432222 12344567888888777777666553
Q ss_pred CCCCHHHHHHHHhcCCcEEEEcc-CCCcHHHHHHHHhCCCEEEEe---cCCHHHHHH----HHHcCCCEEEE--ecCCCC
Q 020013 73 AFPHNENIKAILSEKVAVLQVSW-GEYSEELVLEAHSAGVKVVPQ---VGSFDEARK----AVNAGVDAIIV--QGREAG 142 (332)
Q Consensus 73 ~~~~~~~~~~~~~~~~~~I~~~~-g~~~~~~i~~~~~~g~~v~~~---v~s~~~a~~----a~~~g~D~ivv--~G~eaG 142 (332)
.++++.+.+. +|++++.. -+-.-++++.+.+.|.+|..+ ..++++-.. ....|-+-|++ .|...
T Consensus 97 ----~~q~~~vae~-~DilQIgAr~~rqtdLL~a~~~tgkpV~lKkGq~~t~~e~~~aaeki~~~GN~~viLcERG~tF- 170 (290)
T PLN03033 97 ----SSQCEAVGKV-ADIIQIPAFLCRQTDLLVAAAKTGKIINIKKGQFCAPSVMRNSAEKVRLAGNPNVMVCERGTMF- 170 (290)
T ss_pred ----HHHHHHHHhh-CcEEeeCcHHHHHHHHHHHHHccCCeEEeCCCCCCCHHHHHHHHHHHHHcCCCcEEEEeCCCCc-
Confidence 6778888877 79999963 221224555666678887754 347776544 44567665555 35432
Q ss_pred cccCCCCchhhhHHHHHHHhCCCCCcEEee----------------cCcCCH--HH----HHHHHHcCcceeee
Q 020013 143 GHVIGQDGLISLLPMVVDLIGDRDIPIIAA----------------GGIVDA--RG----YVAALSLGAQGICL 194 (332)
Q Consensus 143 Gh~~~~~~~~~ll~~i~~~~~~~~iPviaa----------------GGI~~~--~~----v~~al~~GA~gV~~ 194 (332)
|.. ....++..+|.++. . ..|||.. ||.+.+ +- ..+++++||||+.+
T Consensus 171 gy~-~lv~D~r~ip~mk~-~---~lPVI~DpSHsvQ~pg~~~~~~~g~~s~G~Re~V~~larAAvA~GaDGlfi 239 (290)
T PLN03033 171 GYN-DLIVDPRNLEWMRE-A---NCPVVADITHSLQQPAGKKLDGGGVASGGLRELIPCIARTAVAVGVDGIFM 239 (290)
T ss_pred CCC-CcccchhhhHHHHh-c---CCCEEEeCCccccCCCcccccccCCCCCCCHHHHHHHHHHHHHhCCCEEEE
Confidence 221 12345667777764 3 6898864 111111 22 35777899999998
|
|
| >PRK12857 fructose-1,6-bisphosphate aldolase; Reviewed | Back alignment and domain information |
|---|
Probab=96.49 E-value=0.4 Score=44.29 Aligned_cols=176 Identities=20% Similarity=0.288 Sum_probs=106.7
Q ss_pred CCcHHHHHHHHhCC---CceeecC--C---CCCCHHHHHHHHHHHHhhcCCcEEEEeecCCCCHHHHHHHHhcCCcEEEE
Q 020013 22 ISGPELVAAVANAG---GLGLLRA--P---DWEAPDYLRDLIRKTRSLTERPFGVGVVLAFPHNENIKAILSEKVAVLQV 93 (332)
Q Consensus 22 ~s~~~la~avs~aG---glG~i~~--~---~~~~~e~~~~~i~~~r~~~~~p~gvnl~~~~~~~~~~~~~~~~~~~~I~~ 93 (332)
+.+.+.+.++-++. ..++|-. . .+...+.+...+..+.+....|+.+++=--. +.+.+..+++.|...|-+
T Consensus 25 v~n~e~~~avi~AAee~~sPvIlq~~~~~~~~~g~~~~~~~~~~~A~~~~VPValHLDH~~-~~e~i~~ai~~GftSVM~ 103 (284)
T PRK12857 25 CNNMEIVQAIVAAAEAEKSPVIIQASQGAIKYAGIEYISAMVRTAAEKASVPVALHLDHGT-DFEQVMKCIRNGFTSVMI 103 (284)
T ss_pred eCCHHHHHHHHHHHHHhCCCEEEEechhHhhhCCHHHHHHHHHHHHHHCCCCEEEECCCCC-CHHHHHHHHHcCCCeEEE
Confidence 45666665555442 2333311 0 1233444555555554445667777653222 356777888889888877
Q ss_pred ccCCCcH--------HHHHHHHhCCCEEEE-------------------ecCCHHHHHHHH-HcCCCEEEE-ecCCCCcc
Q 020013 94 SWGEYSE--------ELVLEAHSAGVKVVP-------------------QVGSFDEARKAV-NAGVDAIIV-QGREAGGH 144 (332)
Q Consensus 94 ~~g~~~~--------~~i~~~~~~g~~v~~-------------------~v~s~~~a~~a~-~~g~D~ivv-~G~eaGGh 144 (332)
.....|. ++++.++..|+.|=. ..++++++++.. +.|+|.+-+ .|.-=|-.
T Consensus 104 DgS~lp~eeNi~~T~~vv~~Ah~~gvsVEaElG~vgg~e~~~~~~~~~~~~T~pe~a~~Fv~~TgvD~LAvaiGt~HG~y 183 (284)
T PRK12857 104 DGSKLPLEENIALTKKVVEIAHAVGVSVEAELGKIGGTEDDITVDEREAAMTDPEEARRFVEETGVDALAIAIGTAHGPY 183 (284)
T ss_pred eCCCCCHHHHHHHHHHHHHHHHHcCCEEEEEeeecCCccCCCCcccchhhcCCHHHHHHHHHHHCCCEEeeccCcccccc
Confidence 6333222 345556666655411 034788888876 569999876 33322222
Q ss_pred cCCCCchhhhHHHHHHHhCCCCCcEEeecCcC-CHHHHHHHHHcCcceeeeccccccC
Q 020013 145 VIGQDGLISLLPMVVDLIGDRDIPIIAAGGIV-DARGYVAALSLGAQGICLGTRFVAS 201 (332)
Q Consensus 145 ~~~~~~~~~ll~~i~~~~~~~~iPviaaGGI~-~~~~v~~al~~GA~gV~~GT~fl~t 201 (332)
.+.+.-.+.++.++.+.+ ++|++.-||=+ ..+++.+++.+|..-|=++|.+...
T Consensus 184 ~~~p~Ld~~~L~~i~~~~---~vPLVlHGgSG~~~e~~~~ai~~Gi~KiNi~T~~~~a 238 (284)
T PRK12857 184 KGEPKLDFDRLAKIKELV---NIPIVLHGSSGVPDEAIRKAISLGVRKVNIDTNIREA 238 (284)
T ss_pred CCCCcCCHHHHHHHHHHh---CCCEEEeCCCCCCHHHHHHHHHcCCeEEEeCcHHHHH
Confidence 212334588999999887 79999777543 3477889999999999999986543
|
|
| >TIGR01361 DAHP_synth_Bsub phospho-2-dehydro-3-deoxyheptonate aldolase | Back alignment and domain information |
|---|
Probab=96.48 E-value=0.26 Score=44.95 Aligned_cols=138 Identities=20% Similarity=0.254 Sum_probs=85.8
Q ss_pred HHHHHHhhcCCcEEEEeecCCCCHHHHHHHHhcCCcEEEEccCC-CcHHHHHHHHhCCCEEEEecC---CHHHHHHHH--
Q 020013 54 LIRKTRSLTERPFGVGVVLAFPHNENIKAILSEKVAVLQVSWGE-YSEELVLEAHSAGVKVVPQVG---SFDEARKAV-- 127 (332)
Q Consensus 54 ~i~~~r~~~~~p~gvnl~~~~~~~~~~~~~~~~~~~~I~~~~g~-~~~~~i~~~~~~g~~v~~~v~---s~~~a~~a~-- 127 (332)
++++.++..+.||..-++ +...++.+.+. +|++.++... ...++++.+.+.|.+|+.+-+ ++++...+.
T Consensus 80 ~l~~~~~~~Gl~~~t~~~----d~~~~~~l~~~-~d~lkI~s~~~~n~~LL~~~a~~gkPVilk~G~~~t~~e~~~Ave~ 154 (260)
T TIGR01361 80 LLRRAADEHGLPVVTEVM----DPRDVEIVAEY-ADILQIGARNMQNFELLKEVGKQGKPVLLKRGMGNTIEEWLYAAEY 154 (260)
T ss_pred HHHHHHHHhCCCEEEeeC----ChhhHHHHHhh-CCEEEECcccccCHHHHHHHhcCCCcEEEeCCCCCCHHHHHHHHHH
Confidence 344444444555555443 35677777777 9999987443 334678888888999987654 677766554
Q ss_pred --HcCC-CEEEEe-cC-CC-CcccCCCCchhhhHHHHHHHhCCCCCcEEe-ecCcCC-----HHHHHHHHHcCcceeeec
Q 020013 128 --NAGV-DAIIVQ-GR-EA-GGHVIGQDGLISLLPMVVDLIGDRDIPIIA-AGGIVD-----ARGYVAALSLGAQGICLG 195 (332)
Q Consensus 128 --~~g~-D~ivv~-G~-ea-GGh~~~~~~~~~ll~~i~~~~~~~~iPvia-aGGI~~-----~~~v~~al~~GA~gV~~G 195 (332)
+.|. +.++++ |. .. +-+ .....+..++.+++.. ++||+. ++-... ..-..++.++||+|+++=
T Consensus 155 i~~~Gn~~i~l~~rG~s~y~~~~--~~~~dl~~i~~lk~~~---~~pV~~ds~Hs~G~r~~~~~~~~aAva~Ga~gl~iE 229 (260)
T TIGR01361 155 ILSSGNGNVILCERGIRTFEKAT--RNTLDLSAVPVLKKET---HLPIIVDPSHAAGRRDLVIPLAKAAIAAGADGLMIE 229 (260)
T ss_pred HHHcCCCcEEEEECCCCCCCCCC--cCCcCHHHHHHHHHhh---CCCEEEcCCCCCCccchHHHHHHHHHHcCCCEEEEE
Confidence 4576 555555 33 11 111 1234577788887765 799999 333222 334457889999999886
Q ss_pred cccccC
Q 020013 196 TRFVAS 201 (332)
Q Consensus 196 T~fl~t 201 (332)
+-|-..
T Consensus 230 ~H~t~d 235 (260)
T TIGR01361 230 VHPDPE 235 (260)
T ss_pred eCCCcc
Confidence 555433
|
The member of this family from Synechocystis PCC 6803, CcmA, was shown to be essential for carboxysome formation. However, no other candidate for this enzyme is present in that species, chorismate biosynthesis does occur, other species having this protein lack carboxysomes but appear to make chorismate, and a requirement of CcmA for carboxysome formation does not prohibit a role in chorismate biosynthesis. |
| >PRK09250 fructose-bisphosphate aldolase; Provisional | Back alignment and domain information |
|---|
Probab=96.48 E-value=0.021 Score=53.70 Aligned_cols=123 Identities=21% Similarity=0.219 Sum_probs=75.9
Q ss_pred HHHHHhcCCcEEEEc--cCCCcH--------HHHHHHHhCCCEEEEec-------CC-------HH----HHHHHHHcCC
Q 020013 80 IKAILSEKVAVLQVS--WGEYSE--------ELVLEAHSAGVKVVPQV-------GS-------FD----EARKAVNAGV 131 (332)
Q Consensus 80 ~~~~~~~~~~~I~~~--~g~~~~--------~~i~~~~~~g~~v~~~v-------~s-------~~----~a~~a~~~g~ 131 (332)
++.++..|+++|.++ +|.+.+ ++++.+++.|++++..+ .+ ++ .++.+.+.|+
T Consensus 152 VedAlrLGAdAV~~tvy~Gs~~E~~ml~~l~~i~~ea~~~GlPlv~~~YpRG~~i~~~~d~~~~~d~Ia~AaRiaaELGA 231 (348)
T PRK09250 152 VEDALRLGAVAVGATIYFGSEESRRQIEEISEAFEEAHELGLATVLWSYLRNSAFKKDGDYHTAADLTGQANHLAATIGA 231 (348)
T ss_pred HHHHHHCCCCEEEEEEecCCHHHHHHHHHHHHHHHHHHHhCCCEEEEecccCcccCCcccccccHHHHHHHHHHHHHHcC
Confidence 678889999998764 454221 23455677899987532 11 11 2455778999
Q ss_pred CEEEEecCC-CCcc-------cC-------CCCchhhhHHHHHHHhCCCCCcEEeecCcCCH-----HHHHHH---HHcC
Q 020013 132 DAIIVQGRE-AGGH-------VI-------GQDGLISLLPMVVDLIGDRDIPIIAAGGIVDA-----RGYVAA---LSLG 188 (332)
Q Consensus 132 D~ivv~G~e-aGGh-------~~-------~~~~~~~ll~~i~~~~~~~~iPviaaGGI~~~-----~~v~~a---l~~G 188 (332)
|+|.+.-++ .++. .. .......+++.+++..-...+||+.+||=... +.+.++ +..|
T Consensus 232 DIVKv~yp~~~~~f~~v~~~~~~~~~~~~~~~~~~~~~~~~~V~ac~ag~vpVviAGG~k~~~~e~L~~v~~a~~~i~aG 311 (348)
T PRK09250 232 DIIKQKLPTNNGGYKAINFGKTDDRVYSKLTSDHPIDLVRYQVANCYMGRRGLINSGGASKGEDDLLDAVRTAVINKRAG 311 (348)
T ss_pred CEEEecCCCChhhHHHhhcccccccccccccccchHHHHHHHHHhhccCCceEEEeCCCCCCHHHHHHHHHHHHHhhhcC
Confidence 999985431 1110 00 00133445555555431115899999998742 235677 8899
Q ss_pred cceeeeccccccCc
Q 020013 189 AQGICLGTRFVASE 202 (332)
Q Consensus 189 A~gV~~GT~fl~t~ 202 (332)
|.|+.+|.-.+-.+
T Consensus 312 a~Gv~iGRNIfQ~~ 325 (348)
T PRK09250 312 GMGLIIGRKAFQRP 325 (348)
T ss_pred CcchhhchhhhcCC
Confidence 99999998766553
|
|
| >PRK07114 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional | Back alignment and domain information |
|---|
Probab=96.47 E-value=0.073 Score=47.34 Aligned_cols=100 Identities=17% Similarity=0.118 Sum_probs=69.4
Q ss_pred HHHHHHHhcCCcEEEEccCCC-cHHHHHHHH----hC--CCEEE-EecCCHHHHHHHHHcCCCEEEEecCCCCcccCCCC
Q 020013 78 ENIKAILSEKVAVLQVSWGEY-SEELVLEAH----SA--GVKVV-PQVGSFDEARKAVNAGVDAIIVQGREAGGHVIGQD 149 (332)
Q Consensus 78 ~~~~~~~~~~~~~I~~~~g~~-~~~~i~~~~----~~--g~~v~-~~v~s~~~a~~a~~~g~D~ivv~G~eaGGh~~~~~ 149 (332)
+..+.+.+.|+.++.+.+-.+ ..+.++.++ +. ++.+. .+|.|.++++.+.++|+++++--+.
T Consensus 31 ~~~~al~~gGi~~iEiT~~tp~a~~~i~~l~~~~~~~~p~~~vGaGTVl~~e~a~~a~~aGA~FiVsP~~---------- 100 (222)
T PRK07114 31 KVIKACYDGGARVFEFTNRGDFAHEVFAELVKYAAKELPGMILGVGSIVDAATAALYIQLGANFIVTPLF---------- 100 (222)
T ss_pred HHHHHHHHCCCCEEEEeCCCCcHHHHHHHHHHHHHhhCCCeEEeeEeCcCHHHHHHHHHcCCCEEECCCC----------
Confidence 346677889999999987442 235566653 21 23343 5678999999999999999986221
Q ss_pred chhhhHHHHHHHhCCCCCcEEeecCcCCHHHHHHHHHcCcceeee
Q 020013 150 GLISLLPMVVDLIGDRDIPIIAAGGIVDARGYVAALSLGAQGICL 194 (332)
Q Consensus 150 ~~~~ll~~i~~~~~~~~iPviaaGGI~~~~~v~~al~~GA~gV~~ 194 (332)
...++....+ .++|++. |+.|+.++..++.+|++.|-+
T Consensus 101 -~~~v~~~~~~----~~i~~iP--G~~TpsEi~~A~~~Ga~~vKl 138 (222)
T PRK07114 101 -NPDIAKVCNR----RKVPYSP--GCGSLSEIGYAEELGCEIVKL 138 (222)
T ss_pred -CHHHHHHHHH----cCCCEeC--CCCCHHHHHHHHHCCCCEEEE
Confidence 1233433332 2677754 777999999999999998764
|
|
| >PRK05718 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional | Back alignment and domain information |
|---|
Probab=96.46 E-value=0.065 Score=47.36 Aligned_cols=117 Identities=19% Similarity=0.219 Sum_probs=77.4
Q ss_pred HHHHHHHhcCCcEEEEccCCC-cHHHHHHHHhC--CCEEE-EecCCHHHHHHHHHcCCCEEEEecCCCCcccCCCCchhh
Q 020013 78 ENIKAILSEKVAVLQVSWGEY-SEELVLEAHSA--GVKVV-PQVGSFDEARKAVNAGVDAIIVQGREAGGHVIGQDGLIS 153 (332)
Q Consensus 78 ~~~~~~~~~~~~~I~~~~g~~-~~~~i~~~~~~--g~~v~-~~v~s~~~a~~a~~~g~D~ivv~G~eaGGh~~~~~~~~~ 153 (332)
+..+.+.+.|+++|.+.+-.+ ..+.++.+++. ++.|. .++.+.++++.+.++|+|+++.-+. . ..
T Consensus 31 ~i~~al~~~Gi~~iEitl~~~~~~~~I~~l~~~~p~~~IGAGTVl~~~~a~~a~~aGA~FivsP~~----------~-~~ 99 (212)
T PRK05718 31 PLAKALVAGGLPVLEVTLRTPAALEAIRLIAKEVPEALIGAGTVLNPEQLAQAIEAGAQFIVSPGL----------T-PP 99 (212)
T ss_pred HHHHHHHHcCCCEEEEecCCccHHHHHHHHHHHCCCCEEEEeeccCHHHHHHHHHcCCCEEECCCC----------C-HH
Confidence 345667778999999876432 23566777653 34444 4678899999999999999987322 1 23
Q ss_pred hHHHHHHHhCCCCCcEEeecCcCCHHHHHHHHHcCcceeeeccccccCccCCCCHHHHHHHhc
Q 020013 154 LLPMVVDLIGDRDIPIIAAGGIVDARGYVAALSLGAQGICLGTRFVASEESYAHPEYKRKLVE 216 (332)
Q Consensus 154 ll~~i~~~~~~~~iPviaaGGI~~~~~v~~al~~GA~gV~~GT~fl~t~Es~~~~~~k~~~~~ 216 (332)
++....+ . ++|++. |+.|+..+.+++.+||+-|-+ +..++.....|-+.+..
T Consensus 100 vi~~a~~-~---~i~~iP--G~~TptEi~~a~~~Ga~~vKl-----FPa~~~gg~~~lk~l~~ 151 (212)
T PRK05718 100 LLKAAQE-G---PIPLIP--GVSTPSELMLGMELGLRTFKF-----FPAEASGGVKMLKALAG 151 (212)
T ss_pred HHHHHHH-c---CCCEeC--CCCCHHHHHHHHHCCCCEEEE-----ccchhccCHHHHHHHhc
Confidence 4444333 2 577653 777999999999999999887 22232223555555544
|
|
| >cd06557 KPHMT-like Ketopantoate hydroxymethyltransferase (KPHMT) is the first enzyme in the pantothenate biosynthesis pathway | Back alignment and domain information |
|---|
Probab=96.46 E-value=0.15 Score=46.27 Aligned_cols=154 Identities=16% Similarity=0.129 Sum_probs=93.0
Q ss_pred chhhcCCccceecCCCCCCCCcHHHHHHHHhCCCceee-c---------CC--CCCCHHHHHHHHHHHHhhcCCc-EEEE
Q 020013 3 WRGMLGFEYGIVQAPLGPDISGPELVAAVANAGGLGLL-R---------AP--DWEAPDYLRDLIRKTRSLTERP-FGVG 69 (332)
Q Consensus 3 ~~~~l~~~~Pii~apM~~g~s~~~la~avs~aGglG~i-~---------~~--~~~~~e~~~~~i~~~r~~~~~p-~gvn 69 (332)
|.++..-..|++ |. +.-|...+..+.++|.=.++ + .+ ...+.+++....+.++..++.| +-+.
T Consensus 4 lr~l~~~~~~l~---~~-~ayD~~sA~l~e~aG~d~i~vGds~~~~~lG~pDt~~vtl~em~~~~~~V~r~~~~p~viaD 79 (254)
T cd06557 4 LQKMKKAGEKIV---ML-TAYDYPTAKLADEAGVDVILVGDSLGMVVLGYDSTLPVTLDEMIYHTRAVRRGAPRALVVAD 79 (254)
T ss_pred HHHHHhCCCcEE---EE-eCCCHHHHHHHHHcCCCEEEECHHHHHHHcCCCCCCCcCHHHHHHHHHHHHhcCCCCeEEEe
Confidence 445555456775 32 46788888888787731111 1 11 1245666666667766666777 4444
Q ss_pred ee-cCCCC--HH----HHHHHHhcCCcEEEEccCCCcHHHHHHHHhCCCEEEEec----------------C-CH-----
Q 020013 70 VV-LAFPH--NE----NIKAILSEKVAVLQVSWGEYSEELVLEAHSAGVKVVPQV----------------G-SF----- 120 (332)
Q Consensus 70 l~-~~~~~--~~----~~~~~~~~~~~~I~~~~g~~~~~~i~~~~~~g~~v~~~v----------------~-s~----- 120 (332)
+- ..... ++ ..+.+.+.|++.|.+--+....+.++.+.+.|++|+..+ . +.
T Consensus 80 ~~fg~y~~~~~~av~~a~r~~~~aGa~aVkiEd~~~~~~~I~al~~agipV~gHiGL~pq~~~~~gg~~~~grt~~~a~~ 159 (254)
T cd06557 80 MPFGSYQTSPEQALRNAARLMKEAGADAVKLEGGAEVAETIRALVDAGIPVMGHIGLTPQSVNQLGGYKVQGKTEEEAER 159 (254)
T ss_pred CCCCcccCCHHHHHHHHHHHHHHhCCeEEEEcCcHHHHHHHHHHHHcCCCeeccccccceeeeccCCceeccCCHHHHHH
Confidence 42 11111 11 234455589999999644334567788888998876211 1 22
Q ss_pred --HHHHHHHHcCCCEEEEecCCCCcccCCCCchhhhHHHHHHHhCCCCCcEEeecC
Q 020013 121 --DEARKAVNAGVDAIIVQGREAGGHVIGQDGLISLLPMVVDLIGDRDIPIIAAGG 174 (332)
Q Consensus 121 --~~a~~a~~~g~D~ivv~G~eaGGh~~~~~~~~~ll~~i~~~~~~~~iPviaaGG 174 (332)
+.++..+++|+|.|++++. + -.+.+++.+.+ ++|+|..|.
T Consensus 160 ~i~ra~a~~~AGA~~i~lE~v----------~-~~~~~~i~~~v---~iP~igiGa 201 (254)
T cd06557 160 LLEDALALEEAGAFALVLECV----------P-AELAKEITEAL---SIPTIGIGA 201 (254)
T ss_pred HHHHHHHHHHCCCCEEEEcCC----------C-HHHHHHHHHhC---CCCEEEecc
Confidence 3445567899999999653 2 24778888887 799997653
|
Ketopantoate hydroxymethyltransferase (KPHMT) catalyzes the first committed step in the biosynthesis of pantothenate (vitamin B5), which is a precursor to coenzyme A and is required for penicillin biosynthesis. |
| >PLN02274 inosine-5'-monophosphate dehydrogenase | Back alignment and domain information |
|---|
Probab=96.42 E-value=0.011 Score=58.94 Aligned_cols=190 Identities=16% Similarity=0.256 Sum_probs=117.5
Q ss_pred cchhhcCCccceecCCCCCCCCcHHHHHHHHhCCCceeecCCCCCCHHHHHHHHHHHHhhcC----CcEEE---------
Q 020013 2 GWRGMLGFEYGIVQAPLGPDISGPELVAAVANAGGLGLLRAPDWEAPDYLRDLIRKTRSLTE----RPFGV--------- 68 (332)
Q Consensus 2 ~~~~~l~~~~Pii~apM~~g~s~~~la~avs~aGglG~i~~~~~~~~e~~~~~i~~~r~~~~----~p~gv--------- 68 (332)
.+++.|++++|||++||. ++++++||.+++++||+|+|.. + .+++.....++++++... .|..+
T Consensus 46 ~lt~~~~~~~Pivsa~M~-~vt~~~lA~Ama~aGGiGfI~~-~-as~E~q~~~Irkvk~~~~gmi~dpvtV~pd~tV~dA 122 (505)
T PLN02274 46 RLSRNIPLSIPCVSSPMD-TVTESDMAIAMAALGGIGIVHY-N-NTAEEQAAIVRKAKSRRVGFVSDPVVKSPSSTISSL 122 (505)
T ss_pred ccccccCcCCCEeccCCc-ccchHHHHHHHHhCCCeEEEcC-C-CCHHHHHHHHHHhhcccccccCCCeeeCCCCcHHHH
Confidence 367899999999999997 7999999999999999999986 3 578888888888775311 01100
Q ss_pred -------------------------EeecC-------C----------------------CCHHHHHHHHhcCCcEEEEc
Q 020013 69 -------------------------GVVLA-------F----------------------PHNENIKAILSEKVAVLQVS 94 (332)
Q Consensus 69 -------------------------nl~~~-------~----------------------~~~~~~~~~~~~~~~~I~~~ 94 (332)
+++.. . +..+.++.+.+.+...+-+-
T Consensus 123 ~~lm~~~~~~~lpVvD~~~~~GklvGIVT~~DL~~v~~~~~~V~eIMt~~~~lvtv~~~~sL~eAl~~m~~~~~~~LPVV 202 (505)
T PLN02274 123 DELKASRGFSSVCVTETGTMGSKLLGYVTKRDWDFVNDRETKLSEVMTSDDDLVTAPAGIDLEEAEAVLKDSKKGKLPLV 202 (505)
T ss_pred HHHHHhcCCceEEEEeCCCcCCeEEEEEEHHHHhhccccCCcHHHHhccCCCcEEECCCCCHHHHHHHHHHcCCCEEEEE
Confidence 00000 0 00112222333333222110
Q ss_pred --c----CC-CcHHHHHHHHh---------C-C-CEEEEecC----CHHHHHHHHHcCCCEEEEecCCCCcccCCCCchh
Q 020013 95 --W----GE-YSEELVLEAHS---------A-G-VKVVPQVG----SFDEARKAVNAGVDAIIVQGREAGGHVIGQDGLI 152 (332)
Q Consensus 95 --~----g~-~~~~~i~~~~~---------~-g-~~v~~~v~----s~~~a~~a~~~g~D~ivv~G~eaGGh~~~~~~~~ 152 (332)
. |. ...++.+.... . | ..|...|+ ..+.+..+.++|+|+|+++.. -||. ...|
T Consensus 203 D~~g~LvGvITr~DIlk~~~~p~~~~~~~d~~~~l~vgaavg~~~~~~~r~~~l~~ag~d~i~iD~~--~g~~---~~~~ 277 (505)
T PLN02274 203 NEDGELVDLVTRTDVKRVKGYPKLGKPSVGKDGKLLVGAAIGTRESDKERLEHLVKAGVDVVVLDSS--QGDS---IYQL 277 (505)
T ss_pred cCCCeEEEEEEHHHHHHHhhCcCccccccCCCCCEEEEEEEcCCccHHHHHHHHHHcCCCEEEEeCC--CCCc---HHHH
Confidence 0 00 01122222211 1 1 22333443 246677788999999999764 3443 3457
Q ss_pred hhHHHHHHHhCCCCCcEEeecCcCCHHHHHHHHHcCcceeeec--cccccCc
Q 020013 153 SLLPMVVDLIGDRDIPIIAAGGIVDARGYVAALSLGAQGICLG--TRFVASE 202 (332)
Q Consensus 153 ~ll~~i~~~~~~~~iPviaaGGI~~~~~v~~al~~GA~gV~~G--T~fl~t~ 202 (332)
..++++++..+ ++ .+.+|+|.|.+++..++.+|||+|.+| +...++.
T Consensus 278 ~~i~~ik~~~p--~~-~vi~g~v~t~e~a~~a~~aGaD~i~vg~g~G~~~~t 326 (505)
T PLN02274 278 EMIKYIKKTYP--EL-DVIGGNVVTMYQAQNLIQAGVDGLRVGMGSGSICTT 326 (505)
T ss_pred HHHHHHHHhCC--CC-cEEEecCCCHHHHHHHHHcCcCEEEECCCCCccccC
Confidence 88899888652 34 445699999999999999999999775 4444433
|
|
| >PRK00042 tpiA triosephosphate isomerase; Provisional | Back alignment and domain information |
|---|
Probab=96.41 E-value=0.12 Score=46.94 Aligned_cols=120 Identities=21% Similarity=0.303 Sum_probs=70.5
Q ss_pred HHHHHHHhcCCcEEEEc-------cCCCcHHHHHH----HHhCCCEEEEecCCHHHHHH--------------HHHcC--
Q 020013 78 ENIKAILSEKVAVLQVS-------WGEYSEELVLE----AHSAGVKVVPQVGSFDEARK--------------AVNAG-- 130 (332)
Q Consensus 78 ~~~~~~~~~~~~~I~~~-------~g~~~~~~i~~----~~~~g~~v~~~v~s~~~a~~--------------a~~~g-- 130 (332)
-..+.+.+.|++++.++ |++ ..+.+.+ +.+.|+.++..++...+.+. .+ .+
T Consensus 77 vS~~mLkd~G~~~viiGHSERR~~f~E-td~~v~~K~~~a~~~gl~pIvCiGEt~~~r~~g~~~~v~~~Ql~~~l-~~~~ 154 (250)
T PRK00042 77 ISAEMLKDLGVKYVIIGHSERRQYFGE-TDELVNKKVKAALKAGLTPILCVGETLEEREAGKTEEVVARQLEAAL-AGLS 154 (250)
T ss_pred cCHHHHHHCCCCEEEeCcccccCccCc-CHHHHHHHHHHHHHCCCEEEEEcCCcHHHHHcCChHHHHHHHHHHHH-ccCC
Confidence 34677888999999885 343 3445544 67789998888875433222 11 11
Q ss_pred ----CCEEEE-ecCCCCc--ccCCCC---chhhhHHHHHHH-hC--CCCCcEEeecCcCCHHHHHHHHH-cCcceeeecc
Q 020013 131 ----VDAIIV-QGREAGG--HVIGQD---GLISLLPMVVDL-IG--DRDIPIIAAGGIVDARGYVAALS-LGAQGICLGT 196 (332)
Q Consensus 131 ----~D~ivv-~G~eaGG--h~~~~~---~~~~ll~~i~~~-~~--~~~iPviaaGGI~~~~~v~~al~-~GA~gV~~GT 196 (332)
...+++ +...+=| ....+. .....+++.... .. ..+++|+..|+| +++++.+.+. .+.||+.+|+
T Consensus 155 ~~~~~~~vIAYEPvWAIGtG~~as~~~~~~v~~~Ir~~l~~~~~~~~~~~~IlYGGSV-~~~N~~~l~~~~~vDG~LVG~ 233 (250)
T PRK00042 155 AEQFANLVIAYEPVWAIGTGKTATPEQAQEVHAFIRAVLAELYGEVAEKVRILYGGSV-KPDNAAELMAQPDIDGALVGG 233 (250)
T ss_pred HHHhCCEEEEECCHHHhCCCCCCCHHHHHHHHHHHHHHHHHhcccccCCceEEEcCCC-CHHHHHHHhcCCCCCEEEEee
Confidence 123443 3333333 221111 112333333221 00 125899999999 7888887765 6899999999
Q ss_pred cccc
Q 020013 197 RFVA 200 (332)
Q Consensus 197 ~fl~ 200 (332)
+-+-
T Consensus 234 Asl~ 237 (250)
T PRK00042 234 ASLK 237 (250)
T ss_pred eeec
Confidence 9873
|
|
| >PF01116 F_bP_aldolase: Fructose-bisphosphate aldolase class-II; InterPro: IPR000771 Fructose-bisphosphate aldolase [, ] is a glycolytic enzyme that catalyses the reversible aldol cleavage or condensation of fructose-1,6-bisphosphate into dihydroxyacetone-phosphate and glyceraldehyde 3-phosphate | Back alignment and domain information |
|---|
Probab=96.40 E-value=0.32 Score=45.04 Aligned_cols=150 Identities=23% Similarity=0.274 Sum_probs=97.8
Q ss_pred HHHHHHHHHHHhhcCCcEEEEeecCCCCHHHHHHHHhcCCcEEEEccCCCcH--------HHHHHHHhCCCEEEEe----
Q 020013 49 DYLRDLIRKTRSLTERPFGVGVVLAFPHNENIKAILSEKVAVLQVSWGEYSE--------ELVLEAHSAGVKVVPQ---- 116 (332)
Q Consensus 49 e~~~~~i~~~r~~~~~p~gvnl~~~~~~~~~~~~~~~~~~~~I~~~~g~~~~--------~~i~~~~~~g~~v~~~---- 116 (332)
+.+...++.+.+....|+.+++=--. +.+.+..+++.|.+.|-+.....|. ++++.++..|+.|=..
T Consensus 59 ~~~~~~~~~~a~~~~vPValHLDH~~-~~e~i~~ai~~GftSVM~DgS~l~~eeNi~~T~~vv~~ah~~gv~VEaElG~i 137 (287)
T PF01116_consen 59 EYLAAMVKAAAEEASVPVALHLDHGK-DFEDIKRAIDAGFTSVMIDGSALPFEENIAITREVVEYAHAYGVSVEAELGHI 137 (287)
T ss_dssp HHHHHHHHHHHHHSTSEEEEEEEEE--SHHHHHHHHHHTSSEEEEE-TTS-HHHHHHHHHHHHHHHHHTT-EEEEEESBS
T ss_pred HHHHHHHHHHHHHcCCCEEeecccCC-CHHHHHHHHHhCcccccccCCcCCHHHHHHHHHHHHHhhhhhCCEEEEEeeee
Confidence 44455555555556778887763222 2577888889999998886433332 4556667777766321
Q ss_pred ----------------cCCHHHHHHHH-HcCCCEEEE-ecCCCCcccC--CCCchhhhHHHHHHHhCCCCCcEEeecCcC
Q 020013 117 ----------------VGSFDEARKAV-NAGVDAIIV-QGREAGGHVI--GQDGLISLLPMVVDLIGDRDIPIIAAGGIV 176 (332)
Q Consensus 117 ----------------v~s~~~a~~a~-~~g~D~ivv-~G~eaGGh~~--~~~~~~~ll~~i~~~~~~~~iPviaaGGI~ 176 (332)
.+++++|+... +.|+|.+-+ .|.-=|.... .+.-.+.+|.++.+.+. ++|++.-||=+
T Consensus 138 ~g~ed~~~~~~~~~~~~TdP~~a~~Fv~~TgvD~LAvaiGt~HG~y~~~~~p~Ld~~~L~~I~~~~~--~iPLVlHGgSG 215 (287)
T PF01116_consen 138 GGKEDGIESEEETESLYTDPEEAKEFVEETGVDALAVAIGTAHGMYKGGKKPKLDFDRLKEIREAVP--DIPLVLHGGSG 215 (287)
T ss_dssp SSSCTTCSSSTT-TTCSSSHHHHHHHHHHHTTSEEEE-SSSBSSSBSSSSSTC--HHHHHHHHHHHH--TSEEEESSCTT
T ss_pred eccCCCccccccccccccCHHHHHHHHHHhCCCEEEEecCccccccCCCCCcccCHHHHHHHHHhcC--CCCEEEECCCC
Confidence 14678888765 679999877 3432232222 22345889999999873 59999888655
Q ss_pred CH-HHHHHHHHcCcceeeeccccccC
Q 020013 177 DA-RGYVAALSLGAQGICLGTRFVAS 201 (332)
Q Consensus 177 ~~-~~v~~al~~GA~gV~~GT~fl~t 201 (332)
.+ +++.+++.+|..-|=++|.+..+
T Consensus 216 ~~~e~~~~ai~~Gi~KiNi~T~~~~a 241 (287)
T PF01116_consen 216 LPDEQIRKAIKNGISKINIGTELRRA 241 (287)
T ss_dssp S-HHHHHHHHHTTEEEEEESHHHHHH
T ss_pred CCHHHHHHHHHcCceEEEEehHHHHH
Confidence 55 48999999999999999986543
|
There are two classes of fructose-bisphosphate aldolases with different catalytic mechanisms. Class-II aldolases [], mainly found in prokaryotes and fungi, are homodimeric enzymes, which require a divalent metal ion, generally zinc, for their activity. This family also includes the Escherichia coli galactitol operon protein, gatY, which catalyses the transformation of tagatose 1,6-bisphosphate into glycerone phosphate and D-glyceraldehyde 3-phosphate; and E. coli N-acetyl galactosamine operon protein, agaY, which catalyses the same reaction. There are two histidine residues in the first half of the sequence of these enzymes that have been shown to be involved in binding a zinc ion [].; GO: 0008270 zinc ion binding, 0016832 aldehyde-lyase activity, 0005975 carbohydrate metabolic process; PDB: 3Q94_A 1RVG_B 1RV8_C 3C4U_A 3C56_B 3C52_A 2FJK_A 3N9R_P 3N9S_A 1GVF_B .... |
| >PTZ00314 inosine-5'-monophosphate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=96.36 E-value=0.0098 Score=59.28 Aligned_cols=68 Identities=26% Similarity=0.426 Sum_probs=53.0
Q ss_pred HHHHHHHHHcCCCEEEEecCCCCcccCCCCchhhhHHHHHHHhCCCCCcEEeecCcCCHHHHHHHHHcCcceeeec
Q 020013 120 FDEARKAVNAGVDAIIVQGREAGGHVIGQDGLISLLPMVVDLIGDRDIPIIAAGGIVDARGYVAALSLGAQGICLG 195 (332)
Q Consensus 120 ~~~a~~a~~~g~D~ivv~G~eaGGh~~~~~~~~~ll~~i~~~~~~~~iPviaaGGI~~~~~v~~al~~GA~gV~~G 195 (332)
.+.+..+.++|+|.|.+... -||. ...+..++++++..+ ++||++ |.|.|.+++..++.+|||+|.+|
T Consensus 243 ~~~~~~l~~ag~d~i~id~a--~G~s---~~~~~~i~~ik~~~~--~~~v~a-G~V~t~~~a~~~~~aGad~I~vg 310 (495)
T PTZ00314 243 IERAAALIEAGVDVLVVDSS--QGNS---IYQIDMIKKLKSNYP--HVDIIA-GNVVTADQAKNLIDAGADGLRIG 310 (495)
T ss_pred HHHHHHHHHCCCCEEEEecC--CCCc---hHHHHHHHHHHhhCC--CceEEE-CCcCCHHHHHHHHHcCCCEEEEC
Confidence 45667788999999999754 3553 234678888888753 577766 88989999999999999999864
|
|
| >COG0157 NadC Nicotinate-nucleotide pyrophosphorylase [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=96.33 E-value=0.024 Score=51.49 Aligned_cols=86 Identities=29% Similarity=0.358 Sum_probs=63.4
Q ss_pred HHHHHHHHhC-C--CEEEEecCCHHHHHHHHHcCCCEEEEecCCCCcccCCCCchhhhHHHHHHHhC-CCCCcEEeecCc
Q 020013 100 EELVLEAHSA-G--VKVVPQVGSFDEARKAVNAGVDAIIVQGREAGGHVIGQDGLISLLPMVVDLIG-DRDIPIIAAGGI 175 (332)
Q Consensus 100 ~~~i~~~~~~-g--~~v~~~v~s~~~a~~a~~~g~D~ivv~G~eaGGh~~~~~~~~~ll~~i~~~~~-~~~iPviaaGGI 175 (332)
.+-++++|+. + .++=..|.|.+++.+|.++|+|.|.++++. ..-++++++.+. ..++-+=++|||
T Consensus 175 ~~Av~~aR~~~~~~~kIEVEvesle~~~eAl~agaDiImLDNm~-----------~e~~~~av~~l~~~~~~~lEaSGgI 243 (280)
T COG0157 175 TEAVRRARAAAPFTKKIEVEVESLEEAEEALEAGADIIMLDNMS-----------PEELKEAVKLLGLAGRALLEASGGI 243 (280)
T ss_pred HHHHHHHHHhCCCCceEEEEcCCHHHHHHHHHcCCCEEEecCCC-----------HHHHHHHHHHhccCCceEEEEeCCC
Confidence 3456666653 2 457788999999999999999999997651 123334444321 114567799999
Q ss_pred CCHHHHHHHHHcCcceeeeccc
Q 020013 176 VDARGYVAALSLGAQGICLGTR 197 (332)
Q Consensus 176 ~~~~~v~~al~~GA~gV~~GT~ 197 (332)
+.+++.++...|.|-+.+|.-
T Consensus 244 -t~~ni~~yA~tGVD~IS~gal 264 (280)
T COG0157 244 -TLENIREYAETGVDVISVGAL 264 (280)
T ss_pred -CHHHHHHHhhcCCCEEEeCcc
Confidence 999999999999999998865
|
|
| >PLN02446 (5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase | Back alignment and domain information |
|---|
Probab=96.31 E-value=0.013 Score=53.24 Aligned_cols=88 Identities=14% Similarity=0.073 Sum_probs=60.2
Q ss_pred CHHHHHHHHHcCCCEEEEecCCCCcccCCCCchhhhHHHHHHHhCCCCCcEEeecCcCCHHHHHHHHHcCcceeeecccc
Q 020013 119 SFDEARKAVNAGVDAIIVQGREAGGHVIGQDGLISLLPMVVDLIGDRDIPIIAAGGIVDARGYVAALSLGAQGICLGTRF 198 (332)
Q Consensus 119 s~~~a~~a~~~g~D~ivv~G~eaGGh~~~~~~~~~ll~~i~~~~~~~~iPviaaGGI~~~~~v~~al~~GA~gV~~GT~f 198 (332)
..+.|+...+.|++.+=+.--++ |.. ....++.++++ + ++||-..|||.+ +++..+|.+||+-|++||..
T Consensus 45 P~~~A~~~~~~Ga~~lHvVDLdg-g~~----~n~~~i~~i~~-~---~~~vqvGGGIR~-e~i~~~l~~Ga~rViigT~A 114 (262)
T PLN02446 45 AAEFAEMYKRDGLTGGHVIMLGA-DDA----SLAAALEALRA-Y---PGGLQVGGGVNS-ENAMSYLDAGASHVIVTSYV 114 (262)
T ss_pred HHHHHHHHHHCCCCEEEEEECCC-CCc----ccHHHHHHHHh-C---CCCEEEeCCccH-HHHHHHHHcCCCEEEEchHH
Confidence 34566667777777665433322 221 23677888877 5 699999999985 99999999999999999998
Q ss_pred ccCccCCCCHHHHHHHhcC
Q 020013 199 VASEESYAHPEYKRKLVEM 217 (332)
Q Consensus 199 l~t~Es~~~~~~k~~~~~~ 217 (332)
+...|- .++..++.+.+-
T Consensus 115 v~~~~~-~p~~v~~~~~~~ 132 (262)
T PLN02446 115 FRDGQI-DLERLKDLVRLV 132 (262)
T ss_pred HhCCCC-CHHHHHHHHHHh
Confidence 876321 123344444443
|
|
| >PRK13396 3-deoxy-7-phosphoheptulonate synthase; Provisional | Back alignment and domain information |
|---|
Probab=96.29 E-value=0.76 Score=43.70 Aligned_cols=178 Identities=20% Similarity=0.284 Sum_probs=106.5
Q ss_pred CCccc--eecCCCCCCCCcHHHHHHHHhC---CCceeecCCCC---CCH-------HHHHHHHHHHHhhcCCcEEEEeec
Q 020013 8 GFEYG--IVQAPLGPDISGPELVAAVANA---GGLGLLRAPDW---EAP-------DYLRDLIRKTRSLTERPFGVGVVL 72 (332)
Q Consensus 8 ~~~~P--ii~apM~~g~s~~~la~avs~a---GglG~i~~~~~---~~~-------e~~~~~i~~~r~~~~~p~gvnl~~ 72 (332)
|-+.| +|.+|-+ +-+++.+..+++. -|..++..+.| .+| ++-.++++++++.++.|+-.-++-
T Consensus 97 Gg~~~l~vIAGPCs--IEs~eq~l~~A~~lk~~g~~~~r~g~~kpRtsp~sf~G~g~~gl~~L~~~~~e~Gl~~~tev~d 174 (352)
T PRK13396 97 GENHPVVVVAGPCS--VENEEMIVETAKRVKAAGAKFLRGGAYKPRTSPYAFQGHGESALELLAAAREATGLGIITEVMD 174 (352)
T ss_pred cCCCeEEEEEeCCc--ccCHHHHHHHHHHHHHcCCCEEEeeeecCCCCCcccCCchHHHHHHHHHHHHHcCCcEEEeeCC
Confidence 43454 6777764 7777766555532 34555532111 111 334556677777667776655543
Q ss_pred CCCCHHHHHHHHhcCCcEEEEccCC-CcHHHHHHHHhCCCEEEEec---CCHHHHHHHH----HcCCC-EEEEe-cC---
Q 020013 73 AFPHNENIKAILSEKVAVLQVSWGE-YSEELVLEAHSAGVKVVPQV---GSFDEARKAV----NAGVD-AIIVQ-GR--- 139 (332)
Q Consensus 73 ~~~~~~~~~~~~~~~~~~I~~~~g~-~~~~~i~~~~~~g~~v~~~v---~s~~~a~~a~----~~g~D-~ivv~-G~--- 139 (332)
.+.++.+.+. +|+++++... ...++++.+-+.|.+|+.+- .+++|...+. ..|-+ .++++ |.
T Consensus 175 ----~~~v~~~~~~-~d~lqIga~~~~n~~LL~~va~t~kPVllk~G~~~t~ee~~~A~e~i~~~Gn~~viL~erG~rtf 249 (352)
T PRK13396 175 ----AADLEKIAEV-ADVIQVGARNMQNFSLLKKVGAQDKPVLLKRGMAATIDEWLMAAEYILAAGNPNVILCERGIRTF 249 (352)
T ss_pred ----HHHHHHHHhh-CCeEEECcccccCHHHHHHHHccCCeEEEeCCCCCCHHHHHHHHHHHHHcCCCeEEEEecCCccC
Confidence 5778888777 9999997443 23467777777899988653 3777766554 34664 55553 22
Q ss_pred CCCcccCCCCchhhhHHHHHHHhCCCCCcEEeec----CcCC--HHHHHHHHHcCcceeeeccc
Q 020013 140 EAGGHVIGQDGLISLLPMVVDLIGDRDIPIIAAG----GIVD--ARGYVAALSLGAQGICLGTR 197 (332)
Q Consensus 140 eaGGh~~~~~~~~~ll~~i~~~~~~~~iPviaaG----GI~~--~~~v~~al~~GA~gV~~GT~ 197 (332)
+. ++. .....+..++.+++.. ++|||+.- |-++ +.-..+++++||||+++=+-
T Consensus 250 ~s-~y~-~~~~dl~ai~~lk~~~---~lPVi~DpsH~~G~sd~~~~~a~AAva~GAdGliIE~H 308 (352)
T PRK13396 250 DR-QYT-RNTLDLSVIPVLRSLT---HLPIMIDPSHGTGKSEYVPSMAMAAIAAGTDSLMIEVH 308 (352)
T ss_pred cC-CCC-CCCcCHHHHHHHHHhh---CCCEEECCcccCCcHHHHHHHHHHHHhhCCCeEEEEec
Confidence 11 111 1234577788887765 68998763 3322 22345677899999998444
|
|
| >cd00311 TIM Triosephosphate isomerase (TIM) is a glycolytic enzyme that catalyzes the interconversion of dihydroxyacetone phosphate and D-glyceraldehyde-3-phosphate | Back alignment and domain information |
|---|
Probab=96.29 E-value=0.1 Score=47.07 Aligned_cols=119 Identities=19% Similarity=0.312 Sum_probs=70.3
Q ss_pred HHHHHHhcCCcEEEEc-------cCCCcHHH---HHHHHhCCCEEEEecCCHHHHH----------HHHHc---C----C
Q 020013 79 NIKAILSEKVAVLQVS-------WGEYSEEL---VLEAHSAGVKVVPQVGSFDEAR----------KAVNA---G----V 131 (332)
Q Consensus 79 ~~~~~~~~~~~~I~~~-------~g~~~~~~---i~~~~~~g~~v~~~v~s~~~a~----------~a~~~---g----~ 131 (332)
..+.+.+.|++.+.++ |+.....+ ++.+.+.|+..+..++...+.+ .-.+. + .
T Consensus 76 S~~mL~d~G~~~viiGHSERR~~f~Et~~~i~~Kv~~a~~~gl~pIvCiGE~~~~r~~~~~~~~~~~Ql~~~l~~~~~~~ 155 (242)
T cd00311 76 SAEMLKDAGAKYVIIGHSERRQYFGETDEDVAKKVKAALEAGLTPILCVGETLEEREAGKTEEVVAAQLAAVLAGVEDLA 155 (242)
T ss_pred CHHHHHHcCCCEEEeCcccccCcCCCCcHHHHHHHHHHHHCCCEEEEEeCCCHHHHHcCCHHHHHHHHHHHHHhcchhhc
Confidence 4677888999999885 33322222 2345678998888887433222 11111 1 1
Q ss_pred CEEEE-ecCCCCcccCCCCchhh----hHHHHHHHhCC------CCCcEEeecCcCCHHHHHHHHHcC-cceeeeccccc
Q 020013 132 DAIIV-QGREAGGHVIGQDGLIS----LLPMVVDLIGD------RDIPIIAAGGIVDARGYVAALSLG-AQGICLGTRFV 199 (332)
Q Consensus 132 D~ivv-~G~eaGGh~~~~~~~~~----ll~~i~~~~~~------~~iPviaaGGI~~~~~v~~al~~G-A~gV~~GT~fl 199 (332)
..+++ +...+-|. |...+.. ....+++.+.. .++||+..|+| +++|+.+++..+ .||+.+|++-+
T Consensus 156 ~~iIAYEPvWAIGt--G~~as~~~~~ev~~~ir~~l~~~~~~~~~~~~IlYGGSV-~~~N~~~l~~~~~vDG~LVG~Asl 232 (242)
T cd00311 156 PVVIAYEPVWAIGT--GKTASPEQAQEVHAFIRKLLAELYGEVAEKVRILYGGSV-NPENAAELLAQPDIDGVLVGGASL 232 (242)
T ss_pred CeEEEECCHHHhCC--CCCCCHHHHHHHHHHHHHHHHHhcccccCceeEEECCCC-CHHHHHHHhcCCCCCEEEeehHhh
Confidence 23443 33333332 1111222 22222322211 25899999999 779999999998 99999999977
Q ss_pred c
Q 020013 200 A 200 (332)
Q Consensus 200 ~ 200 (332)
-
T Consensus 233 ~ 233 (242)
T cd00311 233 K 233 (242)
T ss_pred C
Confidence 3
|
The reaction is very efficient and requires neither cofactors nor metal ions. TIM, usually homodimeric, but in some organisms tetrameric, is ubiqitous and conserved in function across eukaryotes, bacteria and archaea. |
| >PRK12595 bifunctional 3-deoxy-7-phosphoheptulonate synthase/chorismate mutase; Reviewed | Back alignment and domain information |
|---|
Probab=96.29 E-value=0.44 Score=45.57 Aligned_cols=142 Identities=17% Similarity=0.187 Sum_probs=87.9
Q ss_pred HHHHHHhhcCCcEEEEeecCCCCHHHHHHHHhcCCcEEEEccCC-CcHHHHHHHHhCCCEEEEec---CCHHHHHHHH--
Q 020013 54 LIRKTRSLTERPFGVGVVLAFPHNENIKAILSEKVAVLQVSWGE-YSEELVLEAHSAGVKVVPQV---GSFDEARKAV-- 127 (332)
Q Consensus 54 ~i~~~r~~~~~p~gvnl~~~~~~~~~~~~~~~~~~~~I~~~~g~-~~~~~i~~~~~~g~~v~~~v---~s~~~a~~a~-- 127 (332)
++.+.++..+.||-.-++ +...++.+.+. +|+++++... ...++++.+-+.|.+|+.+- .++++...+.
T Consensus 173 ~L~~~~~~~Gl~~~t~v~----d~~~~~~l~~~-vd~lkI~s~~~~n~~LL~~~a~~gkPVilk~G~~~t~~e~~~Ave~ 247 (360)
T PRK12595 173 ILKQVADEYGLAVISEIV----NPADVEVALDY-VDVIQIGARNMQNFELLKAAGRVNKPVLLKRGLSATIEEFIYAAEY 247 (360)
T ss_pred HHHHHHHHcCCCEEEeeC----CHHHHHHHHHh-CCeEEECcccccCHHHHHHHHccCCcEEEeCCCCCCHHHHHHHHHH
Confidence 444444445556555443 36778888888 9999997433 23467888878899988654 3777766554
Q ss_pred --HcCC-CEEEEe-cCCCCcccCCCCchhhhHHHHHHHhCCCCCcEEee-cCcC-C----HHHHHHHHHcCcceeeeccc
Q 020013 128 --NAGV-DAIIVQ-GREAGGHVIGQDGLISLLPMVVDLIGDRDIPIIAA-GGIV-D----ARGYVAALSLGAQGICLGTR 197 (332)
Q Consensus 128 --~~g~-D~ivv~-G~eaGGh~~~~~~~~~ll~~i~~~~~~~~iPviaa-GGI~-~----~~~v~~al~~GA~gV~~GT~ 197 (332)
..|. +.++++ |...=-..+-....+..++.+++.. ++||+.. .-.. + +.-..+++++||||+++=+-
T Consensus 248 i~~~Gn~~i~L~erg~s~yp~~~~~~ldl~~i~~lk~~~---~~PV~~d~~Hs~G~r~~~~~~a~aAva~GAdg~~iE~H 324 (360)
T PRK12595 248 IMSQGNGQIILCERGIRTYEKATRNTLDISAVPILKQET---HLPVMVDVTHSTGRRDLLLPTAKAALAIGADGVMAEVH 324 (360)
T ss_pred HHHCCCCCEEEECCccCCCCCCCCCCcCHHHHHHHHHHh---CCCEEEeCCCCCcchhhHHHHHHHHHHcCCCeEEEEec
Confidence 4566 566665 5421000001123567788887766 7999993 2221 1 12345678899999999888
Q ss_pred cccCccCC
Q 020013 198 FVASEESY 205 (332)
Q Consensus 198 fl~t~Es~ 205 (332)
| .++..
T Consensus 325 ~--dp~~a 330 (360)
T PRK12595 325 P--DPAVA 330 (360)
T ss_pred C--CCCCC
Confidence 7 44443
|
|
| >cd06556 ICL_KPHMT Members of the ICL/PEPM_KPHMT enzyme superfamily catalyze the formation and cleavage of either P-C or C-C bonds | Back alignment and domain information |
|---|
Probab=96.25 E-value=0.44 Score=42.92 Aligned_cols=145 Identities=17% Similarity=0.135 Sum_probs=89.2
Q ss_pred cceecCCCCCCCCcHHHHHHHHhCCCceeec----------CC--CCCCHHHHHHHHHHHHhhcC-CcEEEEeecCCC-C
Q 020013 11 YGIVQAPLGPDISGPELVAAVANAGGLGLLR----------AP--DWEAPDYLRDLIRKTRSLTE-RPFGVGVVLAFP-H 76 (332)
Q Consensus 11 ~Pii~apM~~g~s~~~la~avs~aGglG~i~----------~~--~~~~~e~~~~~i~~~r~~~~-~p~gvnl~~~~~-~ 76 (332)
-||+ |. ++-++-.|..+.++|.=.+.. .+ ...+.+++...++.++..+. .|+-+.+-.-.. .
T Consensus 12 ~~i~---~~-~ayD~~sA~i~e~aG~dai~v~~s~~a~~~G~pD~~~vtl~em~~~~~~I~r~~~~~pviaD~~~G~g~~ 87 (240)
T cd06556 12 ERFA---TL-TAYDYSMAKQFADAGLNVMLVGDSQGMTVAGYDDTLPYPVNDVPYHVRAVRRGAPLALIVADLPFGAYGA 87 (240)
T ss_pred CeEE---Ee-cCCCHHHHHHHHHcCCCEEEEChHHHHHhcCCCCCCCcCHHHHHHHHHHHHhhCCCCCEEEeCCCCCCcC
Confidence 4665 32 567888888887776211111 11 12355666666666666554 577666533211 1
Q ss_pred ----HHHHHHHHhcCCcEEEEccCCCcHHHHHHHHhCCCEEEEecCC------------------------HHHHHHHHH
Q 020013 77 ----NENIKAILSEKVAVLQVSWGEYSEELVLEAHSAGVKVVPQVGS------------------------FDEARKAVN 128 (332)
Q Consensus 77 ----~~~~~~~~~~~~~~I~~~~g~~~~~~i~~~~~~g~~v~~~v~s------------------------~~~a~~a~~ 128 (332)
.+.++.+.+.|++.|.+--+....+.++.+++.++.|+.-+.. .+.++..++
T Consensus 88 ~~~~~~~~~~l~~aGa~gv~iED~~~~~~~i~ai~~a~i~ViaRtd~~pq~~~~~gg~~~~~~~~~~~~~ai~Ra~ay~~ 167 (240)
T cd06556 88 PTAAFELAKTFMRAGAAGVKIEGGEWHIETLQMLTAAAVPVIAHTGLTPQSVNTSGGDEGQYRGDEAGEQLIADALAYAP 167 (240)
T ss_pred HHHHHHHHHHHHHcCCcEEEEcCcHHHHHHHHHHHHcCCeEEEEeCCchhhhhccCCceeeccCHHHHHHHHHHHHHHHH
Confidence 2335667789999999853322234567778888888865442 233455678
Q ss_pred cCCCEEEEecCCCCcccCCCCchhhhHHHHHHHhCCCCCcEEeec
Q 020013 129 AGVDAIIVQGREAGGHVIGQDGLISLLPMVVDLIGDRDIPIIAAG 173 (332)
Q Consensus 129 ~g~D~ivv~G~eaGGh~~~~~~~~~ll~~i~~~~~~~~iPviaaG 173 (332)
+|+|.|++++. +...+.++.+.+ ++|++..|
T Consensus 168 AGAd~i~~e~~-----------~~e~~~~i~~~~---~~P~~~~g 198 (240)
T cd06556 168 AGADLIVMECV-----------PVELAKQITEAL---AIPLAGIG 198 (240)
T ss_pred cCCCEEEEcCC-----------CHHHHHHHHHhC---CCCEEEEe
Confidence 99999999532 356677888877 79988744
|
Typical members are phosphoenolpyruvate mutase (PEPM), phosphonopyruvate hydrolase (PPH), carboxyPEP mutase (CPEP mutase), oxaloacetate hydrolase (OAH), isocitrate lyase (ICL), 2-methylisocitrate lyase (MICL), and ketopantoate hydroxymethyltransferase (KPHMT). |
| >PRK11572 copper homeostasis protein CutC; Provisional | Back alignment and domain information |
|---|
Probab=96.24 E-value=0.54 Score=42.41 Aligned_cols=108 Identities=15% Similarity=0.154 Sum_probs=67.9
Q ss_pred HHHHHHhcCCcEEEEcc----CCCcHHHHHHHHh--CCCEEE-Ee----cCCHHHHH-HHHHcCCCEEEEecCCCCcccC
Q 020013 79 NIKAILSEKVAVLQVSW----GEYSEELVLEAHS--AGVKVV-PQ----VGSFDEAR-KAVNAGVDAIIVQGREAGGHVI 146 (332)
Q Consensus 79 ~~~~~~~~~~~~I~~~~----g~~~~~~i~~~~~--~g~~v~-~~----v~s~~~a~-~a~~~g~D~ivv~G~eaGGh~~ 146 (332)
.++.+.+.|+|.|.+++ |.-..+..+++.+ .+.++. +. +.++.++. .+.+.|+|.|+-. ||..
T Consensus 78 di~~~~~~GadGvV~G~L~~dg~vD~~~~~~Li~~a~~~~vTFHRAfD~~~d~~~al~~l~~lG~~rILTS----Gg~~- 152 (248)
T PRK11572 78 DIATVRELGFPGLVTGVLDVDGHVDMPRMRKIMAAAGPLAVTFHRAFDMCANPLNALKQLADLGVARILTS----GQQQ- 152 (248)
T ss_pred HHHHHHHcCCCEEEEeeECCCCCcCHHHHHHHHHHhcCCceEEechhhccCCHHHHHHHHHHcCCCEEECC----CCCC-
Confidence 46677888999998863 2222344444433 245543 32 34555544 4678899999874 3432
Q ss_pred CCCchhhhHHHHHHHhCCCCCcEEeecCcCCHHHHHHHHHcCcceeee
Q 020013 147 GQDGLISLLPMVVDLIGDRDIPIIAAGGIVDARGYVAALSLGAQGICL 194 (332)
Q Consensus 147 ~~~~~~~ll~~i~~~~~~~~iPviaaGGI~~~~~v~~al~~GA~gV~~ 194 (332)
........|.++.+... +.-|++.||| +.+|+.+....|+..+=.
T Consensus 153 ~a~~g~~~L~~lv~~a~--~~~Im~GgGV-~~~Nv~~l~~tG~~~~H~ 197 (248)
T PRK11572 153 DAEQGLSLIMELIAASD--GPIIMAGAGV-RLSNLHKFLDAGVREVHS 197 (248)
T ss_pred CHHHHHHHHHHHHHhcC--CCEEEeCCCC-CHHHHHHHHHcCCCEEee
Confidence 22233566666666553 2339999999 899999988888876654
|
|
| >TIGR00222 panB 3-methyl-2-oxobutanoate hydroxymethyltransferase | Back alignment and domain information |
|---|
Probab=96.21 E-value=0.23 Score=45.18 Aligned_cols=144 Identities=15% Similarity=0.162 Sum_probs=85.7
Q ss_pred cceecCCCCCCCCcHHHHHHHHhCCCceeecCC--------CC-----CCHHHHHHHHHHHHhhcCCcEEE-EeecC--C
Q 020013 11 YGIVQAPLGPDISGPELVAAVANAGGLGLLRAP--------DW-----EAPDYLRDLIRKTRSLTERPFGV-GVVLA--F 74 (332)
Q Consensus 11 ~Pii~apM~~g~s~~~la~avs~aGglG~i~~~--------~~-----~~~e~~~~~i~~~r~~~~~p~gv-nl~~~--~ 74 (332)
-||+ |. ..-|...|..+.++|. ..|..+ ++ .+.|++....+.++.....|+-| ++.+. .
T Consensus 15 ~~i~---m~-tayD~~sA~i~~~aG~-d~ilvGdSlgm~~lG~~~t~~vtldem~~h~~aV~rg~~~~~vv~DmPf~sy~ 89 (263)
T TIGR00222 15 EKIV---AI-TAYDYSFAKLFADAGV-DVILVGDSLGMVVLGHDSTLPVTVADMIYHTAAVKRGAPNCLIVTDLPFMSYA 89 (263)
T ss_pred CcEE---EE-eccCHHHHHHHHHcCC-CEEEECccHhHHhcCCCCCCCcCHHHHHHHHHHHHhhCCCceEEeCCCcCCCC
Confidence 4665 32 4557777777777763 222111 12 45666666666666653444433 11111 0
Q ss_pred CCHH----HHHHHHhcCCcEEEEccCCCcHHHHHHHHhCCCEEEEec-------C----------CH-------HHHHHH
Q 020013 75 PHNE----NIKAILSEKVAVLQVSWGEYSEELVLEAHSAGVKVVPQV-------G----------SF-------DEARKA 126 (332)
Q Consensus 75 ~~~~----~~~~~~~~~~~~I~~~~g~~~~~~i~~~~~~g~~v~~~v-------~----------s~-------~~a~~a 126 (332)
..++ ..+.+.+.|++.|.+-.|....+.++.+.+.|++|+..+ . +. ++++..
T Consensus 90 ~~e~a~~na~rl~~eaGa~aVkiEgg~~~~~~i~~l~~~gIpV~gHiGltPq~a~~~ggy~~qgrt~~~a~~~i~~A~a~ 169 (263)
T TIGR00222 90 TPEQALKNAARVMQETGANAVKLEGGEWLVETVQMLTERGVPVVGHLGLTPQSVNILGGYKVQGKDEEAAKKLLEDALAL 169 (263)
T ss_pred CHHHHHHHHHHHHHHhCCeEEEEcCcHhHHHHHHHHHHCCCCEEEecCCCceeEeecCCeeecCCCHHHHHHHHHHHHHH
Confidence 1122 233444589999999755444567888889999998221 1 22 235566
Q ss_pred HHcCCCEEEEecCCCCcccCCCCchhhhHHHHHHHhCCCCCcEEeec
Q 020013 127 VNAGVDAIIVQGREAGGHVIGQDGLISLLPMVVDLIGDRDIPIIAAG 173 (332)
Q Consensus 127 ~~~g~D~ivv~G~eaGGh~~~~~~~~~ll~~i~~~~~~~~iPviaaG 173 (332)
+++|||.|++++. + ..+..++.+.+ ++|+|..|
T Consensus 170 e~AGA~~ivlE~v----------p-~~~a~~It~~l---~iP~iGIG 202 (263)
T TIGR00222 170 EEAGAQLLVLECV----------P-VELAAKITEAL---AIPVIGIG 202 (263)
T ss_pred HHcCCCEEEEcCC----------c-HHHHHHHHHhC---CCCEEeec
Confidence 7899999999653 2 35677888877 79998654
|
Members of this family are 3-methyl-2-oxobutanoate hydroxymethyltransferase, the first enzyme of the pantothenate biosynthesis pathway. An alternate name is ketopantoate hydroxymethyltransferase. |
| >TIGR01302 IMP_dehydrog inosine-5'-monophosphate dehydrogenase | Back alignment and domain information |
|---|
Probab=96.19 E-value=0.11 Score=51.19 Aligned_cols=120 Identities=23% Similarity=0.260 Sum_probs=78.8
Q ss_pred eecCCCCCCCCcHHHHHHHHhCCCceeecCCCCCCHHHHHHHHHHHHhh-cCCcEEE-EeecCCCCHHHHHHHHhcCCcE
Q 020013 13 IVQAPLGPDISGPELVAAVANAGGLGLLRAPDWEAPDYLRDLIRKTRSL-TERPFGV-GVVLAFPHNENIKAILSEKVAV 90 (332)
Q Consensus 13 ii~apM~~g~s~~~la~avs~aGglG~i~~~~~~~~e~~~~~i~~~r~~-~~~p~gv-nl~~~~~~~~~~~~~~~~~~~~ 90 (332)
++.+.+..+-.+.+.+.++.++|.-.+.........+...+.++++|+. .+.|+.+ |+.. .+....+.+.|+|+
T Consensus 214 ~V~aav~~~~~~~~r~~~L~~aG~d~I~vd~a~g~~~~~~~~i~~i~~~~~~~~vi~G~v~t----~~~a~~l~~aGad~ 289 (450)
T TIGR01302 214 IVGAAVGTREFDKERAEALVKAGVDVIVIDSSHGHSIYVIDSIKEIKKTYPDLDIIAGNVAT----AEQAKALIDAGADG 289 (450)
T ss_pred EEEEEecCchhHHHHHHHHHHhCCCEEEEECCCCcHhHHHHHHHHHHHhCCCCCEEEEeCCC----HHHHHHHHHhCCCE
Confidence 3445554222446777777777743332211111234566778888876 5788887 4433 56778888999999
Q ss_pred EEEcc--------------CCCc----HHHHHHHHhCCCEEEE--ecCCHHHHHHHHHcCCCEEEE
Q 020013 91 LQVSW--------------GEYS----EELVLEAHSAGVKVVP--QVGSFDEARKAVNAGVDAIIV 136 (332)
Q Consensus 91 I~~~~--------------g~~~----~~~i~~~~~~g~~v~~--~v~s~~~a~~a~~~g~D~ivv 136 (332)
|.++. |.+. .++.+.+++.+++|++ .+.+..++.+|+.+|+|+|.+
T Consensus 290 i~vg~g~G~~~~t~~~~~~g~p~~~~i~~~~~~~~~~~vpviadGGi~~~~di~kAla~GA~~V~~ 355 (450)
T TIGR01302 290 LRVGIGPGSICTTRIVAGVGVPQITAVYDVAEYAAQSGIPVIADGGIRYSGDIVKALAAGADAVML 355 (450)
T ss_pred EEECCCCCcCCccceecCCCccHHHHHHHHHHHHhhcCCeEEEeCCCCCHHHHHHHHHcCCCEEEE
Confidence 96542 2111 2234445667899998 688999999999999999998
|
This model describes a rather tightly conserved cluster of IMP dehydrogenase sequences, many of which are characterized. The model excludes two related families of proteins proposed also to be IMP dehydrogenases, but without characterized members. These are related families are the subject of separate models. |
| >PRK05198 2-dehydro-3-deoxyphosphooctonate aldolase; Provisional | Back alignment and domain information |
|---|
Probab=96.17 E-value=0.96 Score=41.02 Aligned_cols=170 Identities=19% Similarity=0.229 Sum_probs=101.7
Q ss_pred ceecCCCCCCCCcHHHHHHHH----hCC---CceeecCCCCC-----CH--------HHHHHHHHHHHhhcCCcEEEEee
Q 020013 12 GIVQAPLGPDISGPELVAAVA----NAG---GLGLLRAPDWE-----AP--------DYLRDLIRKTRSLTERPFGVGVV 71 (332)
Q Consensus 12 Pii~apM~~g~s~~~la~avs----~aG---glG~i~~~~~~-----~~--------e~~~~~i~~~r~~~~~p~gvnl~ 71 (332)
-+|.+|-. +-+.+.+..++ ++| +.|.+.-++|. +| ++=.++++++++.++.|+-.-++
T Consensus 12 ~~iAGPC~--vEs~e~~~~~A~~lk~~~~~~~~~~~fK~sf~KapRTSp~sFqG~G~eeGL~~L~~vk~~~GlpvvTeV~ 89 (264)
T PRK05198 12 FLIAGPCV--IESRDLALRIAEHLKEITDKLGIPYVFKASFDKANRSSIHSFRGPGLEEGLKILQEVKETFGVPVLTDVH 89 (264)
T ss_pred EEEecCCc--ccCHHHHHHHHHHHHHHHHhcCCCeEEeccccCCCCCCCCCCCCCChHHHHHHHHHHHHHHCCceEEEeC
Confidence 47778875 66666554444 333 35444331121 11 23356778888877777776655
Q ss_pred cCCCCHHHHHHHHhcCCcEEEEcc-CCCcHHHHHHHHhCCCEEEEe---cCCHHHHHH----HHHcCCCEEEE--ecCCC
Q 020013 72 LAFPHNENIKAILSEKVAVLQVSW-GEYSEELVLEAHSAGVKVVPQ---VGSFDEARK----AVNAGVDAIIV--QGREA 141 (332)
Q Consensus 72 ~~~~~~~~~~~~~~~~~~~I~~~~-g~~~~~~i~~~~~~g~~v~~~---v~s~~~a~~----a~~~g~D~ivv--~G~ea 141 (332)
- .++++.+.+. +|++++.. ..-.-++++.+-+.|.+|..+ ..++++-.. ....|-.-|++ .|...
T Consensus 90 ~----~~~~~~v~~~-~DilQIgArn~rn~~LL~a~g~t~kpV~lKrG~~~t~~e~~~aaeyi~~~Gn~~vilcERG~tf 164 (264)
T PRK05198 90 E----PEQAAPVAEV-VDVLQIPAFLCRQTDLLVAAAKTGKVVNIKKGQFLAPWDMKNVVDKVREAGNDKIILCERGTSF 164 (264)
T ss_pred C----HHHHHHHHhh-CcEEEECchhcchHHHHHHHhccCCeEEecCCCcCCHHHHHHHHHHHHHcCCCeEEEEeCCCCc
Confidence 4 6778888887 99999963 222336777777778888754 347776554 34567555555 35433
Q ss_pred CcccCCCCchhhhHHHHHHHhCCCCCcEEee---------------cCcCC--HHHHHHHHHcCcceeee
Q 020013 142 GGHVIGQDGLISLLPMVVDLIGDRDIPIIAA---------------GGIVD--ARGYVAALSLGAQGICL 194 (332)
Q Consensus 142 GGh~~~~~~~~~ll~~i~~~~~~~~iPviaa---------------GGI~~--~~~v~~al~~GA~gV~~ 194 (332)
|.. ....++..+|.+++ . ..|||.. ||-.+ +.-..+++++||||+.+
T Consensus 165 -~y~-r~~~D~~~vp~~k~-~---~lPVi~DpSHsvq~pg~~~~~s~G~r~~v~~la~AAvA~GadGl~i 228 (264)
T PRK05198 165 -GYN-NLVVDMRGLPIMRE-T---GAPVIFDATHSVQLPGGQGGSSGGQREFVPVLARAAVAVGVAGLFI 228 (264)
T ss_pred -CCC-CeeechhhhHHHhh-C---CCCEEEeCCccccCCCCCCCCCCCcHHHHHHHHHHHHHcCCCEEEE
Confidence 221 12245666776665 2 5899874 33311 11135778899999998
|
|
| >cd01571 NAPRTase_B Nicotinate phosphoribosyltransferase (NAPRTase), subgroup B | Back alignment and domain information |
|---|
Probab=96.15 E-value=0.034 Score=51.90 Aligned_cols=85 Identities=21% Similarity=0.332 Sum_probs=59.4
Q ss_pred CEEEEecCCHH----HHHHHHHc---CCCEEEEecCCCCcccCCCCchhhhHHHHHHHhCC---CCCcEEeecCcCCHHH
Q 020013 111 VKVVPQVGSFD----EARKAVNA---GVDAIIVQGREAGGHVIGQDGLISLLPMVVDLIGD---RDIPIIAAGGIVDARG 180 (332)
Q Consensus 111 ~~v~~~v~s~~----~a~~a~~~---g~D~ivv~G~eaGGh~~~~~~~~~ll~~i~~~~~~---~~iPviaaGGI~~~~~ 180 (332)
.++...+.+.+ ++..+.+. ++|+|.++.... +. |. ...++.+++++++. .++.++++||| |.++
T Consensus 185 ~~i~vevdt~~~~v~eal~~~~~~~~~~d~I~lDn~~~--~~-G~--~~~~~~~~~~~l~~~g~~~~~ieaSGgI-~~~~ 258 (302)
T cd01571 185 VPRIALIDTFNDEKEEALKAAKALGDKLDGVRLDTPSS--RR-GV--FRYLIREVRWALDIRGYKHVKIFVSGGL-DEED 258 (302)
T ss_pred CCeEEEEeecCcchHHHHHHHHHhCCCCcEEEECCCCC--CC-CC--HHHHHHHHHHHHHhCCCCCeEEEEeCCC-CHHH
Confidence 46666666554 66666655 489999987632 22 21 24445555555421 24679999999 9999
Q ss_pred HHHHHHcCcceeeeccccccC
Q 020013 181 YVAALSLGAQGICLGTRFVAS 201 (332)
Q Consensus 181 v~~al~~GA~gV~~GT~fl~t 201 (332)
+.++.+.|+|.+-+||.+...
T Consensus 259 i~~~a~~gvD~isvGs~~~~~ 279 (302)
T cd01571 259 IKELEDVGVDAFGVGTAISKA 279 (302)
T ss_pred HHHHHHcCCCEEECCcccCCC
Confidence 999999999999999987543
|
Nicotinate phosphoribosyltransferase catalyses the formation of NAMN and PPi from 5-phosphoribosy -1-pyrophosphate (PRPP) and nicotinic acid, this is the first, and also rate limiting, reaction in the NAD salvage synthesis. This salvage pathway serves to recycle NAD degradation products. |
| >TIGR01303 IMP_DH_rel_1 IMP dehydrogenase family protein | Back alignment and domain information |
|---|
Probab=96.15 E-value=0.021 Score=56.58 Aligned_cols=67 Identities=34% Similarity=0.522 Sum_probs=53.0
Q ss_pred HHHHHHHHcCCCEEEEecCCCCcccCCCCchhhhHHHHHHHhCCCCCcEEeecCcCCHHHHHHHHHcCcceeeec
Q 020013 121 DEARKAVNAGVDAIIVQGREAGGHVIGQDGLISLLPMVVDLIGDRDIPIIAAGGIVDARGYVAALSLGAQGICLG 195 (332)
Q Consensus 121 ~~a~~a~~~g~D~ivv~G~eaGGh~~~~~~~~~ll~~i~~~~~~~~iPviaaGGI~~~~~v~~al~~GA~gV~~G 195 (332)
+.+....+.|+|.|+++... ||. .....+++++++... ++|||+ |.+.|.+++..++.+|||+|-+|
T Consensus 228 ~ra~~Lv~aGVd~i~~D~a~--g~~---~~~~~~i~~i~~~~~--~~~vi~-g~~~t~~~~~~l~~~G~d~i~vg 294 (475)
T TIGR01303 228 GKAKALLDAGVDVLVIDTAH--GHQ---VKMISAIKAVRALDL--GVPIVA-GNVVSAEGVRDLLEAGANIIKVG 294 (475)
T ss_pred HHHHHHHHhCCCEEEEeCCC--CCc---HHHHHHHHHHHHHCC--CCeEEE-eccCCHHHHHHHHHhCCCEEEEC
Confidence 44556778999999998764 554 455778888887653 689998 66779999999999999998743
|
This model represents a family of proteins, often annotated as a putative IMP dehydrogenase, related to IMP dehydrogenase and GMP reductase and restricted to the high GC Gram-positive bacteria. All species in which a member is found so far (Corynebacterium glutamicum, Mycobacterium tuberculosis, Streptomyces coelicolor, etc.) also have IMP dehydrogenase as described by TIGRFAMs entry TIGR01302. |
| >COG0106 HisA Phosphoribosylformimino-5-aminoimidazole carboxamide ribonucleotide (ProFAR) isomerase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=96.15 E-value=0.036 Score=49.47 Aligned_cols=89 Identities=22% Similarity=0.354 Sum_probs=67.1
Q ss_pred CCHHHHHHHHHcCCCEEEE---ecCCCCcccCCCCchhhhHHHHHHHhCCCCCcEEeecCcCCHHHHHHHHHcCcceeee
Q 020013 118 GSFDEARKAVNAGVDAIIV---QGREAGGHVIGQDGLISLLPMVVDLIGDRDIPIIAAGGIVDARGYVAALSLGAQGICL 194 (332)
Q Consensus 118 ~s~~~a~~a~~~g~D~ivv---~G~eaGGh~~~~~~~~~ll~~i~~~~~~~~iPviaaGGI~~~~~v~~al~~GA~gV~~ 194 (332)
...+.|++..+.|+..+=+ +|...|+. ....++.++.+.. ++||=..|||.|.+++..++.+|++-|.+
T Consensus 32 ~P~~~a~~~~~~Ga~~lHlVDLdgA~~g~~-----~n~~~i~~i~~~~---~~~vQvGGGIRs~~~v~~ll~~G~~rVii 103 (241)
T COG0106 32 DPLEVAKKWSDQGAEWLHLVDLDGAKAGGP-----RNLEAIKEILEAT---DVPVQVGGGIRSLEDVEALLDAGVARVII 103 (241)
T ss_pred CHHHHHHHHHHcCCcEEEEeeccccccCCc-----ccHHHHHHHHHhC---CCCEEeeCCcCCHHHHHHHHHCCCCEEEE
Confidence 3456677777778877654 45544332 2356788888877 79999999999999999999999999999
Q ss_pred ccccccCccCCCCHHHHHHHhcCCC
Q 020013 195 GTRFVASEESYAHPEYKRKLVEMDK 219 (332)
Q Consensus 195 GT~fl~t~Es~~~~~~k~~~~~~~~ 219 (332)
||.-+.. ++..|+.+.+-.+
T Consensus 104 Gt~av~~-----p~~v~~~~~~~g~ 123 (241)
T COG0106 104 GTAAVKN-----PDLVKELCEEYGD 123 (241)
T ss_pred ecceecC-----HHHHHHHHHHcCC
Confidence 9997544 4466777776653
|
|
| >PRK13398 3-deoxy-7-phosphoheptulonate synthase; Provisional | Back alignment and domain information |
|---|
Probab=96.12 E-value=0.54 Score=43.08 Aligned_cols=176 Identities=18% Similarity=0.249 Sum_probs=100.4
Q ss_pred ccceecCCCCCCCCcHHHHHHHH----hCCCceeecCC---------CCCC-HHHHHHHHHHHHhhcCCcEEEEeecCCC
Q 020013 10 EYGIVQAPLGPDISGPELVAAVA----NAGGLGLLRAP---------DWEA-PDYLRDLIRKTRSLTERPFGVGVVLAFP 75 (332)
Q Consensus 10 ~~Pii~apM~~g~s~~~la~avs----~aGglG~i~~~---------~~~~-~e~~~~~i~~~r~~~~~p~gvnl~~~~~ 75 (332)
+.-+|.+|-. +.+.+.+...+ ++| +.++..+ ++.. .++--++++++++..+.|+..-++-
T Consensus 27 ~~~~iaGPCs--ie~~~~~~~~A~~lk~~g-~~~~r~~~~kpRTs~~s~~G~g~~gl~~l~~~~~~~Gl~~~te~~d--- 100 (266)
T PRK13398 27 EKIIIAGPCA--VESEEQMVKVAEKLKELG-VHMLRGGAFKPRTSPYSFQGLGEEGLKILKEVGDKYNLPVVTEVMD--- 100 (266)
T ss_pred CEEEEEeCCc--CCCHHHHHHHHHHHHHcC-CCEEEEeeecCCCCCCccCCcHHHHHHHHHHHHHHcCCCEEEeeCC---
Confidence 3457778875 66665544444 444 3344321 1111 1122233444444455666655443
Q ss_pred CHHHHHHHHhcCCcEEEEccCC-CcHHHHHHHHhCCCEEEEecC---CHHHHHHHH----HcCC-CEEEEecCCCCcccC
Q 020013 76 HNENIKAILSEKVAVLQVSWGE-YSEELVLEAHSAGVKVVPQVG---SFDEARKAV----NAGV-DAIIVQGREAGGHVI 146 (332)
Q Consensus 76 ~~~~~~~~~~~~~~~I~~~~g~-~~~~~i~~~~~~g~~v~~~v~---s~~~a~~a~----~~g~-D~ivv~G~eaGGh~~ 146 (332)
...++.+.+. ++++.++... ...++++.+-+.|.+|+.+-+ ++++...+. ..|- +.+++ +.|+.+.
T Consensus 101 -~~~~~~l~~~-vd~~kIga~~~~n~~LL~~~a~~gkPV~lk~G~~~s~~e~~~A~e~i~~~Gn~~i~L~---~rG~~t~ 175 (266)
T PRK13398 101 -TRDVEEVADY-ADMLQIGSRNMQNFELLKEVGKTKKPILLKRGMSATLEEWLYAAEYIMSEGNENVVLC---ERGIRTF 175 (266)
T ss_pred -hhhHHHHHHh-CCEEEECcccccCHHHHHHHhcCCCcEEEeCCCCCCHHHHHHHHHHHHhcCCCeEEEE---ECCCCCC
Confidence 4567777777 8999987443 334677888778999987644 777766554 3465 45554 2344221
Q ss_pred CC----CchhhhHHHHHHHhCCCCCcEEee-c-CcCC----HHHHHHHHHcCcceeeeccccc
Q 020013 147 GQ----DGLISLLPMVVDLIGDRDIPIIAA-G-GIVD----ARGYVAALSLGAQGICLGTRFV 199 (332)
Q Consensus 147 ~~----~~~~~ll~~i~~~~~~~~iPviaa-G-GI~~----~~~v~~al~~GA~gV~~GT~fl 199 (332)
.. ...+..++.+++.. +.||+.. . +++. .....+++++||+|+++=+-|-
T Consensus 176 ~~Y~~~~vdl~~i~~lk~~~---~~pV~~D~sHs~G~~~~v~~~~~aAva~Ga~Gl~iE~H~~ 235 (266)
T PRK13398 176 ETYTRNTLDLAAVAVIKELS---HLPIIVDPSHATGRRELVIPMAKAAIAAGADGLMIEVHPE 235 (266)
T ss_pred CCCCHHHHHHHHHHHHHhcc---CCCEEEeCCCcccchhhHHHHHHHHHHcCCCEEEEeccCC
Confidence 11 12355566666554 6899983 3 2321 4556788899999999855443
|
|
| >cd00331 IGPS Indole-3-glycerol phosphate synthase (IGPS); an enzyme in the tryptophan biosynthetic pathway, catalyzing the ring closure reaction of 1-(o-carboxyphenylamino)-1-deoxyribulose-5-phosphate (CdRP) to indole-3-glycerol phosphate (IGP), accompanied by the release of carbon dioxide and water | Back alignment and domain information |
|---|
Probab=96.11 E-value=0.029 Score=49.62 Aligned_cols=73 Identities=22% Similarity=0.249 Sum_probs=54.9
Q ss_pred HHHHHHHHHcCCCEEEEecCCCCcccCCCCchhhhHHHHHHHhCCCCCcEEeecCcCCHHHHHHHHHcCcceeeeccccc
Q 020013 120 FDEARKAVNAGVDAIIVQGREAGGHVIGQDGLISLLPMVVDLIGDRDIPIIAAGGIVDARGYVAALSLGAQGICLGTRFV 199 (332)
Q Consensus 120 ~~~a~~a~~~g~D~ivv~G~eaGGh~~~~~~~~~ll~~i~~~~~~~~iPviaaGGI~~~~~v~~al~~GA~gV~~GT~fl 199 (332)
.+.|+...+.|+|+|-+.--+. .. ...+..+..+++.+ ++||+.-|+|.+...+..++.+|||+|.+++..+
T Consensus 34 ~~~A~~~~~~GA~~l~v~~~~~--~~---~g~~~~~~~i~~~v---~iPi~~~~~i~~~~~v~~~~~~Gad~v~l~~~~~ 105 (217)
T cd00331 34 VEIAKAYEKAGAAAISVLTEPK--YF---QGSLEDLRAVREAV---SLPVLRKDFIIDPYQIYEARAAGADAVLLIVAAL 105 (217)
T ss_pred HHHHHHHHHcCCCEEEEEeCcc--cc---CCCHHHHHHHHHhc---CCCEEECCeecCHHHHHHHHHcCCCEEEEeeccC
Confidence 4567788899999997632211 00 12245667777766 7999999999898899999999999999998866
Q ss_pred c
Q 020013 200 A 200 (332)
Q Consensus 200 ~ 200 (332)
.
T Consensus 106 ~ 106 (217)
T cd00331 106 D 106 (217)
T ss_pred C
Confidence 4
|
IGPS is active as a separate monomer in most organisms, but is also found fused to other enzymes as part of a bifunctional or multifunctional enzyme involved in tryptophan biosynthesis. |
| >PRK05096 guanosine 5'-monophosphate oxidoreductase; Provisional | Back alignment and domain information |
|---|
Probab=96.10 E-value=0.13 Score=48.19 Aligned_cols=108 Identities=18% Similarity=0.256 Sum_probs=66.3
Q ss_pred HHHHHHHhcC-CcEEEEccCCCcHHHHHHHHhC----CCEEEEecCC----HHHHHHHHH--cCCCEEEEecCCCCcccC
Q 020013 78 ENIKAILSEK-VAVLQVSWGEYSEELVLEAHSA----GVKVVPQVGS----FDEARKAVN--AGVDAIIVQGREAGGHVI 146 (332)
Q Consensus 78 ~~~~~~~~~~-~~~I~~~~g~~~~~~i~~~~~~----g~~v~~~v~s----~~~a~~a~~--~g~D~ivv~G~eaGGh~~ 146 (332)
+....+.+.+ .-+++=++ .++++.+.+++. +-.+...+++ .+.+....+ .|+|+|+++-. =||.
T Consensus 61 ~mA~~la~~g~~~~iHk~~--~~e~~~~fv~~~~~~~~~~~~vavG~~~~d~er~~~L~~~~~g~D~iviD~A--hGhs- 135 (346)
T PRK05096 61 EMAKALASFDILTAVHKHY--SVEEWAAFVNNSSADVLKHVMVSTGTSDADFEKTKQILALSPALNFICIDVA--NGYS- 135 (346)
T ss_pred HHHHHHHHCCCeEEEecCC--CHHHHHHHHHhccccccceEEEEecCCHHHHHHHHHHHhcCCCCCEEEEECC--CCcH-
Confidence 3333344433 34444443 345555555432 2233334432 233444555 59999999644 2453
Q ss_pred CCCchhhhHHHHHHHhCCCCCcEEeecCcCCHHHHHHHHHcCcceeeec
Q 020013 147 GQDGLISLLPMVVDLIGDRDIPIIAAGGIVDARGYVAALSLGAQGICLG 195 (332)
Q Consensus 147 ~~~~~~~ll~~i~~~~~~~~iPviaaGGI~~~~~v~~al~~GA~gV~~G 195 (332)
......++.+++.++ +++ |.+|.|.|++.+.+++.+|||+|-+|
T Consensus 136 --~~~i~~ik~ik~~~P--~~~-vIaGNV~T~e~a~~Li~aGAD~vKVG 179 (346)
T PRK05096 136 --EHFVQFVAKAREAWP--DKT-ICAGNVVTGEMVEELILSGADIVKVG 179 (346)
T ss_pred --HHHHHHHHHHHHhCC--CCc-EEEecccCHHHHHHHHHcCCCEEEEc
Confidence 345777888888764 566 55799999999999999999998654
|
|
| >COG0800 Eda 2-keto-3-deoxy-6-phosphogluconate aldolase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=96.04 E-value=0.088 Score=46.08 Aligned_cols=117 Identities=21% Similarity=0.249 Sum_probs=80.7
Q ss_pred HHHHHHHhcCCcEEEEccCCC-cHHHHHHHHhCCCEEE---EecCCHHHHHHHHHcCCCEEEEecCCCCcccCCCCchhh
Q 020013 78 ENIKAILSEKVAVLQVSWGEY-SEELVLEAHSAGVKVV---PQVGSFDEARKAVNAGVDAIIVQGREAGGHVIGQDGLIS 153 (332)
Q Consensus 78 ~~~~~~~~~~~~~I~~~~g~~-~~~~i~~~~~~g~~v~---~~v~s~~~a~~a~~~g~D~ivv~G~eaGGh~~~~~~~~~ 153 (332)
...+.+++.|.+.|.+.+..+ +.+.++.+++.--.++ .+|-++++++.+.++|+++++--|. .-+
T Consensus 29 ~~a~Ali~gGi~~IEITl~sp~a~e~I~~l~~~~p~~lIGAGTVL~~~q~~~a~~aGa~fiVsP~~-----------~~e 97 (211)
T COG0800 29 PLAKALIEGGIPAIEITLRTPAALEAIRALAKEFPEALIGAGTVLNPEQARQAIAAGAQFIVSPGL-----------NPE 97 (211)
T ss_pred HHHHHHHHcCCCeEEEecCCCCHHHHHHHHHHhCcccEEccccccCHHHHHHHHHcCCCEEECCCC-----------CHH
Confidence 345677889999999986543 3467777765422333 3567899999999999999975221 123
Q ss_pred hHHHHHHHhCCCCCcEEeecCcCCHHHHHHHHHcCcceeeeccccccCccCCCCHHHHHHHhc
Q 020013 154 LLPMVVDLIGDRDIPIIAAGGIVDARGYVAALSLGAQGICLGTRFVASEESYAHPEYKRKLVE 216 (332)
Q Consensus 154 ll~~i~~~~~~~~iPviaaGGI~~~~~v~~al~~GA~gV~~GT~fl~t~Es~~~~~~k~~~~~ 216 (332)
+++...+ .++|++- |+.|+..+..++++|++.+= ++.-|......|.+.+.-
T Consensus 98 v~~~a~~----~~ip~~P--G~~TptEi~~Ale~G~~~lK-----~FPa~~~Gg~~~~ka~~g 149 (211)
T COG0800 98 VAKAANR----YGIPYIP--GVATPTEIMAALELGASALK-----FFPAEVVGGPAMLKALAG 149 (211)
T ss_pred HHHHHHh----CCCcccC--CCCCHHHHHHHHHcChhhee-----ecCccccCcHHHHHHHcC
Confidence 3333322 2688764 88899999999999999876 345555556677666654
|
|
| >cd00381 IMPDH IMPDH: The catalytic domain of the inosine monophosphate dehydrogenase | Back alignment and domain information |
|---|
Probab=96.02 E-value=0.35 Score=45.64 Aligned_cols=68 Identities=28% Similarity=0.488 Sum_probs=51.1
Q ss_pred HHHHHHHHHcCCCEEEEecCCCCcccCCCCchhhhHHHHHHHhCCCCCcEEeecCcCCHHHHHHHHHcCcceeeec
Q 020013 120 FDEARKAVNAGVDAIIVQGREAGGHVIGQDGLISLLPMVVDLIGDRDIPIIAAGGIVDARGYVAALSLGAQGICLG 195 (332)
Q Consensus 120 ~~~a~~a~~~g~D~ivv~G~eaGGh~~~~~~~~~ll~~i~~~~~~~~iPviaaGGI~~~~~v~~al~~GA~gV~~G 195 (332)
.+.+..+.++|+|+|++.-. .||. .....+++++++..+ ++||++ |.+.+.+++..++.+|||+|.+|
T Consensus 96 ~~~~~~l~eagv~~I~vd~~--~G~~---~~~~~~i~~ik~~~p--~v~Vi~-G~v~t~~~A~~l~~aGaD~I~vg 163 (325)
T cd00381 96 KERAEALVEAGVDVIVIDSA--HGHS---VYVIEMIKFIKKKYP--NVDVIA-GNVVTAEAARDLIDAGADGVKVG 163 (325)
T ss_pred HHHHHHHHhcCCCEEEEECC--CCCc---HHHHHHHHHHHHHCC--CceEEE-CCCCCHHHHHHHHhcCCCEEEEC
Confidence 35566778899999998542 2332 234667777777652 478877 88889999999999999999984
|
IMPDH catalyzes the NAD-dependent oxidation of inosine 5'-monophosphate (IMP) to xanthosine 5' monophosphate (XMP). It is a rate-limiting step in the de novo synthesis of the guanine nucleotides. There is often a CBS domain inserted in the middle of this domain, which is proposed to play a regulatory role. IMPDH is a key enzyme in the regulation of cell proliferation and differentiation. It has been identified as an attractive target for developing chemotherapeutic agents. |
| >PRK00311 panB 3-methyl-2-oxobutanoate hydroxymethyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=96.01 E-value=0.59 Score=42.70 Aligned_cols=150 Identities=14% Similarity=0.138 Sum_probs=89.0
Q ss_pred hhcCCccceecCCCCCCCCcHHHHHHHHhCCCceeecC---------C----CCCCHHHHHHHHHHHHhhcCCc-EEEEe
Q 020013 5 GMLGFEYGIVQAPLGPDISGPELVAAVANAGGLGLLRA---------P----DWEAPDYLRDLIRKTRSLTERP-FGVGV 70 (332)
Q Consensus 5 ~~l~~~~Pii~apM~~g~s~~~la~avs~aGglG~i~~---------~----~~~~~e~~~~~i~~~r~~~~~p-~gvnl 70 (332)
++..-..||+ |. +.-+...+..+.++|. ..+.. + ...+.+++....+.++..++.| +-+.+
T Consensus 9 ~~~~~g~~i~---~~-tayD~~sArl~e~aG~-d~i~vGds~~~~~lG~~Dt~~vtl~em~~h~~~V~r~~~~p~vvaD~ 83 (264)
T PRK00311 9 KMKQEGEKIV---ML-TAYDYPFAKLFDEAGV-DVILVGDSLGMVVLGYDSTLPVTLDDMIYHTKAVARGAPRALVVADM 83 (264)
T ss_pred HHHhCCCCEE---EE-eCCCHHHHHHHHHcCC-CEEEECHHHHHHHcCCCCCCCcCHHHHHHHHHHHHhcCCCCcEEEeC
Confidence 3443335665 32 4668888887777763 11111 1 1235566666666666555665 34444
Q ss_pred ec-CC-CC-HH----HHHHHHhcCCcEEEEccCCCcHHHHHHHHhCCCEEEEec-----------------CC-------
Q 020013 71 VL-AF-PH-NE----NIKAILSEKVAVLQVSWGEYSEELVLEAHSAGVKVVPQV-----------------GS------- 119 (332)
Q Consensus 71 ~~-~~-~~-~~----~~~~~~~~~~~~I~~~~g~~~~~~i~~~~~~g~~v~~~v-----------------~s------- 119 (332)
-+ .. .. ++ ..+.+.+.|++.|.+--|....+.++.+.+.|++|+..+ .+
T Consensus 84 pfg~y~~~~~~av~~a~r~~~~aGa~aVkiEdg~~~~~~I~al~~agIpV~gHiGL~pq~~~~~gg~~i~grt~~~a~~~ 163 (264)
T PRK00311 84 PFGSYQASPEQALRNAGRLMKEAGAHAVKLEGGEEVAETIKRLVERGIPVMGHLGLTPQSVNVLGGYKVQGRDEEAAEKL 163 (264)
T ss_pred CCCCccCCHHHHHHHHHHHHHHhCCeEEEEcCcHHHHHHHHHHHHCCCCEeeeecccceeecccCCeeeecCCHHHHHHH
Confidence 21 11 11 11 234445589999999644334567888888999986221 12
Q ss_pred HHHHHHHHHcCCCEEEEecCCCCcccCCCCchhhhHHHHHHHhCCCCCcEEeec
Q 020013 120 FDEARKAVNAGVDAIIVQGREAGGHVIGQDGLISLLPMVVDLIGDRDIPIIAAG 173 (332)
Q Consensus 120 ~~~a~~a~~~g~D~ivv~G~eaGGh~~~~~~~~~ll~~i~~~~~~~~iPviaaG 173 (332)
.+.++..+++|||.|++++. +. .+..++.+.+ ++|+|..|
T Consensus 164 i~ra~a~~eAGA~~i~lE~v----------~~-~~~~~i~~~l---~iP~igiG 203 (264)
T PRK00311 164 LEDAKALEEAGAFALVLECV----------PA-ELAKEITEAL---SIPTIGIG 203 (264)
T ss_pred HHHHHHHHHCCCCEEEEcCC----------CH-HHHHHHHHhC---CCCEEEec
Confidence 23445567899999999653 22 5677888877 79998754
|
|
| >cd02911 arch_FMN Archeal FMN-binding domain | Back alignment and domain information |
|---|
Probab=95.99 E-value=0.14 Score=45.96 Aligned_cols=89 Identities=16% Similarity=0.271 Sum_probs=65.4
Q ss_pred CCHHHHHHHHHHHHhhcCCcEEEEeecCC--CCHHHHHHHHhcCCcEEEEccCCC----cHHHHHHHHhCCCEEEE--ec
Q 020013 46 EAPDYLRDLIRKTRSLTERPFGVGVVLAF--PHNENIKAILSEKVAVLQVSWGEY----SEELVLEAHSAGVKVVP--QV 117 (332)
Q Consensus 46 ~~~e~~~~~i~~~r~~~~~p~gvnl~~~~--~~~~~~~~~~~~~~~~I~~~~g~~----~~~~i~~~~~~g~~v~~--~v 117 (332)
.+|+.+.+.++.+++ .+.|+.+.+-... ...+..+.+.+.|+|.|+.+.+.+ ..+.++.++ .+++|+. .+
T Consensus 123 ~~p~~l~eiv~avr~-~~~pVsvKir~g~~~~~~~la~~l~~aG~d~ihv~~~~~g~~ad~~~I~~i~-~~ipVIgnGgI 200 (233)
T cd02911 123 KDPERLSEFIKALKE-TGVPVSVKIRAGVDVDDEELARLIEKAGADIIHVDAMDPGNHADLKKIRDIS-TELFIIGNNSV 200 (233)
T ss_pred CCHHHHHHHHHHHHh-cCCCEEEEEcCCcCcCHHHHHHHHHHhCCCEEEECcCCCCCCCcHHHHHHhc-CCCEEEEECCc
Confidence 358889999999987 5888888765433 224555677789999998864332 124555554 5688875 47
Q ss_pred CCHHHHHHHHHcCCCEEEE
Q 020013 118 GSFDEARKAVNAGVDAIIV 136 (332)
Q Consensus 118 ~s~~~a~~a~~~g~D~ivv 136 (332)
.+.+++.+..+.|+|+|-+
T Consensus 201 ~s~eda~~~l~~GaD~Vmi 219 (233)
T cd02911 201 TTIESAKEMFSYGADMVSV 219 (233)
T ss_pred CCHHHHHHHHHcCCCEEEE
Confidence 8999999999999999988
|
This family of archaeal proteins are part of the NAD(P)H-dependent flavin oxidoreductase (oxidored) FMN-binding family that reduce a range of alternative electron acceptors. Most use FAD/FMN as a cofactor and NAD(P)H as electron donor. Some contain 4Fe-4S cluster to transfer electron from FAD to FMN. The specific function of this group is unknown. |
| >PRK07107 inosine 5-monophosphate dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=95.98 E-value=0.13 Score=51.48 Aligned_cols=67 Identities=22% Similarity=0.329 Sum_probs=49.6
Q ss_pred HHHHHHHHcCCCEEEEecCCCCcccCCCCchhhhHHHHHHHhCCCCCcEEeecCcCCHHHHHHHHHcCcceeee
Q 020013 121 DEARKAVNAGVDAIIVQGREAGGHVIGQDGLISLLPMVVDLIGDRDIPIIAAGGIVDARGYVAALSLGAQGICL 194 (332)
Q Consensus 121 ~~a~~a~~~g~D~ivv~G~eaGGh~~~~~~~~~ll~~i~~~~~~~~iPviaaGGI~~~~~v~~al~~GA~gV~~ 194 (332)
+.+..+.++|+|+|++. .+=||. ......++.+++..+ +--.|.+|-|.+++++..++.+|||++.+
T Consensus 245 ~ra~~Lv~aGvd~i~vd--~a~g~~---~~~~~~i~~ir~~~~--~~~~V~aGnV~t~e~a~~li~aGAd~I~v 311 (502)
T PRK07107 245 ERVPALVEAGADVLCID--SSEGYS---EWQKRTLDWIREKYG--DSVKVGAGNVVDREGFRYLAEAGADFVKV 311 (502)
T ss_pred HHHHHHHHhCCCeEeec--Cccccc---HHHHHHHHHHHHhCC--CCceEEeccccCHHHHHHHHHcCCCEEEE
Confidence 44566778999999996 333443 233667778877652 11357789999999999999999999988
|
|
| >PRK14565 triosephosphate isomerase; Provisional | Back alignment and domain information |
|---|
Probab=95.94 E-value=0.086 Score=47.32 Aligned_cols=118 Identities=16% Similarity=0.152 Sum_probs=72.2
Q ss_pred HHHHHHHhcCCcEEEEc-------cCCCcHHHH----HHHHhCCCEEEEecCCHHHHHHH--------------HHcCCC
Q 020013 78 ENIKAILSEKVAVLQVS-------WGEYSEELV----LEAHSAGVKVVPQVGSFDEARKA--------------VNAGVD 132 (332)
Q Consensus 78 ~~~~~~~~~~~~~I~~~-------~g~~~~~~i----~~~~~~g~~v~~~v~s~~~a~~a--------------~~~g~D 132 (332)
-..+.+.+.|++.+.++ |++ ..+.+ +.+.+.|+..+..++...+.+.+ +...-+
T Consensus 76 vS~~mLkd~G~~~viiGHSERR~~f~E-td~~V~~Kv~~al~~gl~pIvCiGE~~e~r~~~~~~~~~~~Ql~~~l~~~~~ 154 (237)
T PRK14565 76 ISAKMLKECGCSYVILGHSERRSTFHE-TDSDIRLKAESAIESGLIPIICVGETLEDRENGMTKDVLLEQCSNCLPKHGE 154 (237)
T ss_pred cCHHHHHHcCCCEEEECcccccCcCCc-CHHHHHHHHHHHHHCCCEEEEEcCCCHHHHHccChHHHHHHHHHHHhcCCCC
Confidence 34667888999999875 333 33444 55667899888888753332221 111123
Q ss_pred EEEE-ecCCCCcccCCCCchhhhHHHHHHHhCC--CCCcEEeecCcCCHHHHHHHHHc-Ccceeeeccccc
Q 020013 133 AIIV-QGREAGGHVIGQDGLISLLPMVVDLIGD--RDIPIIAAGGIVDARGYVAALSL-GAQGICLGTRFV 199 (332)
Q Consensus 133 ~ivv-~G~eaGGh~~~~~~~~~ll~~i~~~~~~--~~iPviaaGGI~~~~~v~~al~~-GA~gV~~GT~fl 199 (332)
.+++ +...+-|. |...+...+.++...++. .+++|+..|+| +++|+.+.++. +.||+.+|++-+
T Consensus 155 ivIAYEPvWAIGt--G~~a~~e~i~~~~~~Ir~~~~~~~IlYGGSV-~~~N~~~l~~~~~iDG~LvG~asl 222 (237)
T PRK14565 155 FIIAYEPVWAIGG--STIPSNDAIAEAFEIIRSYDSKSHIIYGGSV-NQENIRDLKSINQLSGVLVGSASL 222 (237)
T ss_pred EEEEECCHHHhCC--CCCCCHHHHHHHHHHHHHhCCCceEEEcCcc-CHhhHHHHhcCCCCCEEEEechhh
Confidence 4443 33334332 222333333333333221 26899999999 89999998874 999999999977
|
|
| >PRK10605 N-ethylmaleimide reductase; Provisional | Back alignment and domain information |
|---|
Probab=95.91 E-value=0.037 Score=52.99 Aligned_cols=72 Identities=18% Similarity=0.254 Sum_probs=53.0
Q ss_pred HHHHHcCCCEEEEecCC-CCcccCCCCchhhhHHHHHHHhCCCCCcEEeecCcCCHHHHHHHHHcC-cceeeeccccccC
Q 020013 124 RKAVNAGVDAIIVQGRE-AGGHVIGQDGLISLLPMVVDLIGDRDIPIIAAGGIVDARGYVAALSLG-AQGICLGTRFVAS 201 (332)
Q Consensus 124 ~~a~~~g~D~ivv~G~e-aGGh~~~~~~~~~ll~~i~~~~~~~~iPviaaGGI~~~~~v~~al~~G-A~gV~~GT~fl~t 201 (332)
+.+.+.|+|+|=+.... .+++ .....+..++++.+ ++||++.|++ +++.+.++++-| ||.|.||..+++.
T Consensus 256 ~~L~~~giD~i~vs~~~~~~~~----~~~~~~~~~ik~~~---~~pv~~~G~~-~~~~ae~~i~~G~~D~V~~gR~~iad 327 (362)
T PRK10605 256 EQLGKRGIAYLHMSEPDWAGGE----PYSDAFREKVRARF---HGVIIGAGAY-TAEKAETLIGKGLIDAVAFGRDYIAN 327 (362)
T ss_pred HHHHHcCCCEEEeccccccCCc----cccHHHHHHHHHHC---CCCEEEeCCC-CHHHHHHHHHcCCCCEEEECHHhhhC
Confidence 44566799999875421 1111 11233445667666 7899999998 899999999988 9999999999987
Q ss_pred cc
Q 020013 202 EE 203 (332)
Q Consensus 202 ~E 203 (332)
++
T Consensus 328 Pd 329 (362)
T PRK10605 328 PD 329 (362)
T ss_pred cc
Confidence 64
|
|
| >COG2185 Sbm Methylmalonyl-CoA mutase, C-terminal domain/subunit (cobalamin-binding) [Lipid metabolism] | Back alignment and domain information |
|---|
Probab=95.91 E-value=0.065 Score=44.03 Aligned_cols=81 Identities=30% Similarity=0.496 Sum_probs=56.3
Q ss_pred HHHHhCCCEEEE--ecCCHHHHH-HHHHcCCCEEEEecCCCCcccCCCCchhhhHHHHHHHhCC---CCCcEEeecCcCC
Q 020013 104 LEAHSAGVKVVP--QVGSFDEAR-KAVNAGVDAIIVQGREAGGHVIGQDGLISLLPMVVDLIGD---RDIPIIAAGGIVD 177 (332)
Q Consensus 104 ~~~~~~g~~v~~--~v~s~~~a~-~a~~~g~D~ivv~G~eaGGh~~~~~~~~~ll~~i~~~~~~---~~iPviaaGGI~~ 177 (332)
+.+++.|+.|+. ...|++|+. .|.+..+|.|.+.+.. |+|. .+++.+.+.+.+ .++.| ..||+-.
T Consensus 34 ~~l~d~GfeVi~~g~~~tp~e~v~aA~~~dv~vIgvSsl~-g~h~-------~l~~~lve~lre~G~~~i~v-~~GGvip 104 (143)
T COG2185 34 RALADAGFEVINLGLFQTPEEAVRAAVEEDVDVIGVSSLD-GGHL-------TLVPGLVEALREAGVEDILV-VVGGVIP 104 (143)
T ss_pred HHHHhCCceEEecCCcCCHHHHHHHHHhcCCCEEEEEecc-chHH-------HHHHHHHHHHHHhCCcceEE-eecCccC
Confidence 456778888874 355777665 4568899999997653 4553 456666665532 24554 5566668
Q ss_pred HHHHHHHHHcCcceee
Q 020013 178 ARGYVAALSLGAQGIC 193 (332)
Q Consensus 178 ~~~v~~al~~GA~gV~ 193 (332)
+++..+..++|.+++.
T Consensus 105 ~~d~~~l~~~G~~~if 120 (143)
T COG2185 105 PGDYQELKEMGVDRIF 120 (143)
T ss_pred chhHHHHHHhCcceee
Confidence 8998888889999876
|
|
| >PRK01362 putative translaldolase; Provisional | Back alignment and domain information |
|---|
Probab=95.85 E-value=0.45 Score=42.12 Aligned_cols=137 Identities=18% Similarity=0.165 Sum_probs=85.2
Q ss_pred HHHHHHHhhcCCcEEEEeecCCCCHHHHHH---HHhcCCcEEE-EccCCCcHHHHHHHHhCCCEEEEe-cCCHHHHHHHH
Q 020013 53 DLIRKTRSLTERPFGVGVVLAFPHNENIKA---ILSEKVAVLQ-VSWGEYSEELVLEAHSAGVKVVPQ-VGSFDEARKAV 127 (332)
Q Consensus 53 ~~i~~~r~~~~~p~gvnl~~~~~~~~~~~~---~~~~~~~~I~-~~~g~~~~~~i~~~~~~g~~v~~~-v~s~~~a~~a~ 127 (332)
+.++++++..+.++-+.+...+ .++.++. +.+....++. +..-..--+.++.+++.|+++-.+ +-|.+++..+.
T Consensus 41 ~~~~~i~~~i~g~vs~qv~~~d-~~~m~~~a~~l~~~~~~i~iKIP~T~~G~~a~~~L~~~Gi~v~~T~vfs~~Qa~~Aa 119 (214)
T PRK01362 41 EVIKEICSIVDGPVSAEVIALD-AEGMIKEGRELAKIAPNVVVKIPMTPEGLKAVKALSKEGIKTNVTLIFSANQALLAA 119 (214)
T ss_pred HHHHHHHHhcCCCEEEEEeeCC-HHHHHHHHHHHHHhCCCEEEEeCCCHHHHHHHHHHHHCCCceEEeeecCHHHHHHHH
Confidence 3455555555677777766432 2333332 3333444433 332111125677888889998755 67999999999
Q ss_pred HcCCCEEEE-ecC-CCCcccCCCCchhhhHHHHHHHhCCCC-CcEEeecCcCCHHHHHHHHHcCcceeeec
Q 020013 128 NAGVDAIIV-QGR-EAGGHVIGQDGLISLLPMVVDLIGDRD-IPIIAAGGIVDARGYVAALSLGAQGICLG 195 (332)
Q Consensus 128 ~~g~D~ivv-~G~-eaGGh~~~~~~~~~ll~~i~~~~~~~~-iPviaaGGI~~~~~v~~al~~GA~gV~~G 195 (332)
++|+|+|-. -|+ +--|+ ..+.++.++.+.+...+ -+-|.+..+.+.+++.++..+|||.+-++
T Consensus 120 ~aGa~yispyvgRi~d~g~-----dg~~~i~~~~~~~~~~~~~tkilaAS~r~~~~v~~~~~~G~d~iTi~ 185 (214)
T PRK01362 120 KAGATYVSPFVGRLDDIGT-----DGMELIEDIREIYDNYGFDTEIIAASVRHPMHVLEAALAGADIATIP 185 (214)
T ss_pred hcCCcEEEeecchHhhcCC-----CHHHHHHHHHHHHHHcCCCcEEEEeecCCHHHHHHHHHcCCCEEecC
Confidence 999999875 233 11111 23566666666553212 35666778889999999999999988764
|
|
| >PRK07084 fructose-bisphosphate aldolase; Provisional | Back alignment and domain information |
|---|
Probab=95.83 E-value=0.98 Score=42.35 Aligned_cols=135 Identities=16% Similarity=0.130 Sum_probs=84.9
Q ss_pred CCcEEEEeecCCCCHHHHHHHHhcCCcEEEEccCCCc--------HHHHHHHHhCCCEEEE-----------------ec
Q 020013 63 ERPFGVGVVLAFPHNENIKAILSEKVAVLQVSWGEYS--------EELVLEAHSAGVKVVP-----------------QV 117 (332)
Q Consensus 63 ~~p~gvnl~~~~~~~~~~~~~~~~~~~~I~~~~g~~~--------~~~i~~~~~~g~~v~~-----------------~v 117 (332)
..|+.+++=-- .+.+.+..+++.|...|-+.....| .++++.++..|+.|=. ..
T Consensus 85 ~VPV~lHLDHg-~~~e~i~~ai~~GftSVMiD~S~lp~eeNI~~T~evv~~Ah~~GvsVEaElG~igg~ed~~~~~~~~~ 163 (321)
T PRK07084 85 PIPIVLHLDHG-DSFELCKDCIDSGFSSVMIDGSHLPYEENVALTKKVVEYAHQFDVTVEGELGVLAGVEDEVSAEHHTY 163 (321)
T ss_pred CCcEEEECCCC-CCHHHHHHHHHcCCCEEEeeCCCCCHHHHHHHHHHHHHHHHHcCCeEEEEEeeecCccCCccCccccc
Confidence 35666654221 2356677778888887776533222 2345566666665421 13
Q ss_pred CCHHHHHHHHH-cCCCEEEE-ecCCCCcccC-----CCCchhhhHHHHHHHhCCCCCcEEeecCcCCH------------
Q 020013 118 GSFDEARKAVN-AGVDAIIV-QGREAGGHVI-----GQDGLISLLPMVVDLIGDRDIPIIAAGGIVDA------------ 178 (332)
Q Consensus 118 ~s~~~a~~a~~-~g~D~ivv-~G~eaGGh~~-----~~~~~~~ll~~i~~~~~~~~iPviaaGGI~~~------------ 178 (332)
+++++|+...+ .|+|.+-+ .|.-=|-... .+.-.+.++.++.+.+. ++|++.-||=+.+
T Consensus 164 T~peeA~~Fv~~TgvD~LAvaiGt~HG~Y~~~~~~~~p~Ld~d~L~~I~~~~~--~vPLVLHGgSg~~~~~~~~~~~~g~ 241 (321)
T PRK07084 164 TQPEEVEDFVKKTGVDSLAISIGTSHGAYKFKPGQCPPPLRFDILEEIEKRIP--GFPIVLHGSSSVPQEYVKTINEYGG 241 (321)
T ss_pred CCHHHHHHHHHHhCCCEEeeccccccccccCCCCCCCCccCHHHHHHHHHhcC--CCCEEEeCCCCCcHHHHHHHHHhcC
Confidence 57888888765 69999876 2332122111 12245889999998873 5999988865443
Q ss_pred ----------HHHHHHHHcCcceeeecccccc
Q 020013 179 ----------RGYVAALSLGAQGICLGTRFVA 200 (332)
Q Consensus 179 ----------~~v~~al~~GA~gV~~GT~fl~ 200 (332)
+++.+++.+|..-|=++|.+..
T Consensus 242 ~~~~~~Gi~~e~~~kai~~GI~KINi~Tdl~~ 273 (321)
T PRK07084 242 KLKDAIGIPEEQLRKAAKSAVCKINIDSDGRL 273 (321)
T ss_pred ccccCCCCCHHHHHHHHHcCCceeccchHHHH
Confidence 7788888888888888777543
|
|
| >PTZ00333 triosephosphate isomerase; Provisional | Back alignment and domain information |
|---|
Probab=95.82 E-value=0.29 Score=44.54 Aligned_cols=118 Identities=18% Similarity=0.234 Sum_probs=68.8
Q ss_pred HHHHHHHhcCCcEEEEc-------cCCCcHHH---HHHHHhCCCEEEEecCCHH--------------HHHHHHHcCCC-
Q 020013 78 ENIKAILSEKVAVLQVS-------WGEYSEEL---VLEAHSAGVKVVPQVGSFD--------------EARKAVNAGVD- 132 (332)
Q Consensus 78 ~~~~~~~~~~~~~I~~~-------~g~~~~~~---i~~~~~~g~~v~~~v~s~~--------------~a~~a~~~g~D- 132 (332)
-..+.+.+.|++++.++ |+.....+ ++.+.+.|+..+..++... +.....+ +.+
T Consensus 80 vS~~mL~d~G~~~viiGHSERR~~f~Etd~~I~~Kv~~al~~gl~pIlCvGE~~~~~~~~~~~~~v~~Ql~~~l~-~v~~ 158 (255)
T PTZ00333 80 ISAEMLKDLGINWTILGHSERRQYFGETNEIVAQKVKNALENGLKVILCIGETLEEREAGQTSDVLSKQLEAIVK-KVSD 158 (255)
T ss_pred CCHHHHHHcCCCEEEECcccccCcCCCCcHHHHHHHHHHHHCCCEEEEEcCCCHHHHhCCCHHHHHHHHHHHHHh-cCCH
Confidence 34667888999999885 34333333 2345668998887777432 2222222 222
Q ss_pred -----EEEE-ecCCCCcccCCCCch-------hhhHHHHHH-HhC---CCCCcEEeecCcCCHHHHHHHHH-cCcceeee
Q 020013 133 -----AIIV-QGREAGGHVIGQDGL-------ISLLPMVVD-LIG---DRDIPIIAAGGIVDARGYVAALS-LGAQGICL 194 (332)
Q Consensus 133 -----~ivv-~G~eaGGh~~~~~~~-------~~ll~~i~~-~~~---~~~iPviaaGGI~~~~~v~~al~-~GA~gV~~ 194 (332)
.+++ +...+-|. +...+ ...+++... ... ..++||+..|+| +++++.+.+. .+.||+.+
T Consensus 159 ~~~~~iiIAYEPvWAIGt--g~~a~~e~i~~~~~~IR~~l~~~~~~~~~~~~~ILYGGSV-~~~N~~~l~~~~~vDG~Lv 235 (255)
T PTZ00333 159 EAWDNIVIAYEPVWAIGT--GKVATPEQAQEVHAFIRKWLAEKVGADVAEATRIIYGGSV-NEKNCKELIKQPDIDGFLV 235 (255)
T ss_pred HHcceEEEEECCHHHhCC--CCCCCHHHHHHHHHHHHHHHHHhhcccccccceEEEcCCC-CHHHHHHHhcCCCCCEEEE
Confidence 3444 33344332 11112 222332111 111 125899999999 8899988765 68999999
Q ss_pred ccccc
Q 020013 195 GTRFV 199 (332)
Q Consensus 195 GT~fl 199 (332)
|++-+
T Consensus 236 G~asl 240 (255)
T PTZ00333 236 GGASL 240 (255)
T ss_pred ehHhh
Confidence 99876
|
|
| >PF03932 CutC: CutC family; InterPro: IPR005627 Copper transport in Escherichia coli is mediated by the products of at least six genes, cutA, cutB, cutC, cutD, cutE, and cutF | Back alignment and domain information |
|---|
Probab=95.81 E-value=0.47 Score=41.50 Aligned_cols=159 Identities=25% Similarity=0.301 Sum_probs=83.7
Q ss_pred CcHHHHHHHHhCCCce--e---ecCCCCCCHHHHHHHHHHHHhhcCCcEEEEeecCCC-----C--------HHHHHHHH
Q 020013 23 SGPELVAAVANAGGLG--L---LRAPDWEAPDYLRDLIRKTRSLTERPFGVGVVLAFP-----H--------NENIKAIL 84 (332)
Q Consensus 23 s~~~la~avs~aGglG--~---i~~~~~~~~e~~~~~i~~~r~~~~~p~gvnl~~~~~-----~--------~~~~~~~~ 84 (332)
.+++-+.++.+.|.=- + +..++ .||.. ..++.+++..+.| +++++.+- + .+.++.+.
T Consensus 8 ~s~~~a~~A~~~GAdRiELc~~l~~GG-lTPS~--g~i~~~~~~~~ip--v~vMIRpr~gdF~Ys~~E~~~M~~dI~~~~ 82 (201)
T PF03932_consen 8 ESLEDALAAEAGGADRIELCSNLEVGG-LTPSL--GLIRQAREAVDIP--VHVMIRPRGGDFVYSDEEIEIMKEDIRMLR 82 (201)
T ss_dssp SSHHHHHHHHHTT-SEEEEEBTGGGT--B---H--HHHHHHHHHTTSE--EEEE--SSSS-S---HHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHcCCCEEEECCCccCCC-cCcCH--HHHHHHHhhcCCc--eEEEECCCCCCccCCHHHHHHHHHHHHHHH
Confidence 4566666666666411 1 12222 35532 4455565554555 55555321 0 23456778
Q ss_pred hcCCcEEEEcc----CCCcHHHHHHHHh--CCCEEE-Ee----cCCHHHHH-HHHHcCCCEEEEecCCCCcccCCCCchh
Q 020013 85 SEKVAVLQVSW----GEYSEELVLEAHS--AGVKVV-PQ----VGSFDEAR-KAVNAGVDAIIVQGREAGGHVIGQDGLI 152 (332)
Q Consensus 85 ~~~~~~I~~~~----g~~~~~~i~~~~~--~g~~v~-~~----v~s~~~a~-~a~~~g~D~ivv~G~eaGGh~~~~~~~~ 152 (332)
+.|+|.+.+++ |.-..+..+.+.+ .+.++. +- +.++.++. .+.+.|+|.|+-.| |.. .....+
T Consensus 83 ~~GadG~VfG~L~~dg~iD~~~~~~Li~~a~~~~~tFHRAfD~~~d~~~al~~L~~lG~~rVLTSG----g~~-~a~~g~ 157 (201)
T PF03932_consen 83 ELGADGFVFGALTEDGEIDEEALEELIEAAGGMPVTFHRAFDEVPDPEEALEQLIELGFDRVLTSG----GAP-TALEGI 157 (201)
T ss_dssp HTT-SEEEE--BETTSSB-HHHHHHHHHHHTTSEEEE-GGGGGSSTHHHHHHHHHHHT-SEEEEST----TSS-STTTCH
T ss_pred HcCCCeeEEEeECCCCCcCHHHHHHHHHhcCCCeEEEeCcHHHhCCHHHHHHHHHhcCCCEEECCC----CCC-CHHHHH
Confidence 89999998864 2223344444433 366654 32 34555554 45578999998854 332 222235
Q ss_pred hhHHHHHHHhCCCCCcEEeecCcCCHHHHHHHHH-cCcceee
Q 020013 153 SLLPMVVDLIGDRDIPIIAAGGIVDARGYVAALS-LGAQGIC 193 (332)
Q Consensus 153 ~ll~~i~~~~~~~~iPviaaGGI~~~~~v~~al~-~GA~gV~ 193 (332)
..|.++.+..+. ++-|++.||| +.+|+.+.++ .|+..+=
T Consensus 158 ~~L~~lv~~a~~-~i~Im~GgGv-~~~nv~~l~~~tg~~~~H 197 (201)
T PF03932_consen 158 ENLKELVEQAKG-RIEIMPGGGV-RAENVPELVEETGVREIH 197 (201)
T ss_dssp HHHHHHHHHHTT-SSEEEEESS---TTTHHHHHHHHT-SEEE
T ss_pred HHHHHHHHHcCC-CcEEEecCCC-CHHHHHHHHHhhCCeEEe
Confidence 566666665543 6889999999 8899999988 8877654
|
A mutation in one or more of these genes results in an increased copper sensitivity. Members of this family are between 200 and 300 amino acids in length and are found in both eukaryotes and bacteria.; GO: 0005507 copper ion binding, 0055070 copper ion homeostasis; PDB: 2BDQ_A 3IWP_I 1X8C_B 1X7I_A 1TWD_B. |
| >COG2876 AroA 3-deoxy-D-arabino-heptulosonate 7-phosphate (DAHP) synthase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=95.79 E-value=0.48 Score=42.80 Aligned_cols=170 Identities=22% Similarity=0.300 Sum_probs=97.0
Q ss_pred ceecCCCCCCCCcHHHHHHHHh---CCCceeecCCCC---CCH-------HHHHHHHHHHHhhcCCcEEEEeecCCCCHH
Q 020013 12 GIVQAPLGPDISGPELVAAVAN---AGGLGLLRAPDW---EAP-------DYLRDLIRKTRSLTERPFGVGVVLAFPHNE 78 (332)
Q Consensus 12 Pii~apM~~g~s~~~la~avs~---aGglG~i~~~~~---~~~-------e~~~~~i~~~r~~~~~p~gvnl~~~~~~~~ 78 (332)
-+|.+|-+ +-+-|.+..+++ ..|.-++..+-| .+| ++-.++++++++.++.|+-.-++- .+
T Consensus 47 ~viAGPCs--vEs~E~i~~~A~~vk~~Ga~~lRGgafKPRTSPYsFQGlge~gL~~l~~a~~~~Gl~vvtEvm~----~~ 120 (286)
T COG2876 47 RVIAGPCS--VESEEQVRETAESVKAAGAKALRGGAFKPRTSPYSFQGLGEEGLKLLKRAADETGLPVVTEVMD----VR 120 (286)
T ss_pred EEEecCcc--cCCHHHHHHHHHHHHHcchhhccCCcCCCCCCcccccccCHHHHHHHHHHHHHcCCeeEEEecC----HH
Confidence 46677775 566666655553 234444432111 122 233456677777777877766654 57
Q ss_pred HHHHHHhcCCcEEEEccCCC-cHHHHHHHHhCCCEEEEe---cCCHHHHHHH----HHcCCCEEEE--ec---CCCCccc
Q 020013 79 NIKAILSEKVAVLQVSWGEY-SEELVLEAHSAGVKVVPQ---VGSFDEARKA----VNAGVDAIIV--QG---REAGGHV 145 (332)
Q Consensus 79 ~~~~~~~~~~~~I~~~~g~~-~~~~i~~~~~~g~~v~~~---v~s~~~a~~a----~~~g~D~ivv--~G---~eaGGh~ 145 (332)
.++.+.+. +|+++++.... .-++.+.+-+.+.+|+.+ -.|.+|-..| ...|..-||+ .| +|- +++
T Consensus 121 ~~e~~~~y-~DilqvGARNMQNF~LLke~G~~~kPvLLKRg~~aTieEwL~AAEYI~s~GN~~vILCERGIRtfe~-~TR 198 (286)
T COG2876 121 DVEAAAEY-ADILQVGARNMQNFALLKEVGRQNKPVLLKRGLSATIEEWLNAAEYILSHGNGNVILCERGIRTFEK-ATR 198 (286)
T ss_pred HHHHHHhh-hhHHHhcccchhhhHHHHHhcccCCCeEEecCccccHHHHHHHHHHHHhCCCCcEEEEecccccccc-ccc
Confidence 78888887 99999875431 113444444456777754 3477765544 3456554544 22 222 121
Q ss_pred CCCCchhhhHHHHHHHhCCCCCcEEeecCcCCH-HH-----HHHHHHcCcceeee
Q 020013 146 IGQDGLISLLPMVVDLIGDRDIPIIAAGGIVDA-RG-----YVAALSLGAQGICL 194 (332)
Q Consensus 146 ~~~~~~~~ll~~i~~~~~~~~iPviaaGGI~~~-~~-----v~~al~~GA~gV~~ 194 (332)
..-+++.++.+++.. +.|||+.=-=.++ ++ ..+++++||||+++
T Consensus 199 --ntLDi~aV~~~kq~T---HLPVivDpSH~~Grr~lv~pla~AA~AaGAdglmi 248 (286)
T COG2876 199 --NTLDISAVPILKQET---HLPVIVDPSHATGRRDLVEPLAKAAIAAGADGLMI 248 (286)
T ss_pred --ceechHHHHHHHhhc---CCCEEECCCCcccchhhHHHHHHHHHhccCCeeEE
Confidence 123366677777655 7999975322222 22 35677899999987
|
|
| >KOG2333 consensus Uncharacterized conserved protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=95.75 E-value=0.23 Score=48.42 Aligned_cols=193 Identities=15% Similarity=0.215 Sum_probs=115.5
Q ss_pred hhcCCccceecCCCCCCCCcHHHHHHHHhCCCceeecCCC-CCCH--HHHHHHHHHHHhh-cCCcEEEEeecCCCCH--H
Q 020013 5 GMLGFEYGIVQAPLGPDISGPELVAAVANAGGLGLLRAPD-WEAP--DYLRDLIRKTRSL-TERPFGVGVVLAFPHN--E 78 (332)
Q Consensus 5 ~~l~~~~Pii~apM~~g~s~~~la~avs~aGglG~i~~~~-~~~~--e~~~~~i~~~r~~-~~~p~gvnl~~~~~~~--~ 78 (332)
+.+.++.-.+.+|+. .+.++.+..-+-..|+ .+....- +.++ .....+..-+|.+ ....|||.|-...++. .
T Consensus 259 k~lD~r~K~~LaPLT-TvGNLPFRRlCk~lGA-DvTcgEMA~~tpLlqG~~sEWALlkRH~sEdiFGVQlag~~pdt~~k 336 (614)
T KOG2333|consen 259 KLLDFRDKKYLAPLT-TVGNLPFRRLCKKLGA-DVTCGEMAMATPLLQGTASEWALLKRHQSEDIFGVQLAGSKPDTAAK 336 (614)
T ss_pred cccccccceeecccc-ccCCccHHHHHHHhCC-ccchhHHHHHHHHhcccchhhhhhhhcCcccceeeEeccCChHHHHH
Confidence 345666778899998 7889998776655553 2211100 0000 0000111222332 3457999998877641 1
Q ss_pred HHHHHH-hcCCcEEEEccCCCc----------------HHHHHHHHh-----CCCEEEEecCC-------H-HH-HHHHH
Q 020013 79 NIKAIL-SEKVAVLQVSWGEYS----------------EELVLEAHS-----AGVKVVPQVGS-------F-DE-ARKAV 127 (332)
Q Consensus 79 ~~~~~~-~~~~~~I~~~~g~~~----------------~~~i~~~~~-----~g~~v~~~v~s-------~-~~-a~~a~ 127 (332)
..+++. ...+|+|.++.|+|- ..+.+.++. .++++-+++.+ + .+ .....
T Consensus 337 aaq~i~e~~~VDFIDlN~GCPIDlvy~qG~GsALl~rp~rl~~~l~~m~~vs~~iPiTVKiRTG~keg~~~a~~Li~~i~ 416 (614)
T KOG2333|consen 337 AAQVIAETCDVDFIDLNMGCPIDLVYRQGGGSALLNRPARLIRILRAMNAVSGDIPITVKIRTGTKEGHPVAHELIPRIV 416 (614)
T ss_pred HHHHHHhhcceeeeeccCCCChheeeccCCcchhhcCcHHHHHHHHHHHHhccCCCeEEEEecccccCchhHHHHHHHHh
Confidence 223222 346889988877742 122232322 24465555421 1 11 22333
Q ss_pred -HcCCCEEEEecCCCCcccCCCCchhhhHHHHHHHhCCCCCcEEeecCcCCHHHHHHHHHcC--cceeeeccccccC
Q 020013 128 -NAGVDAIIVQGREAGGHVIGQDGLISLLPMVVDLIGDRDIPIIAAGGIVDARGYVAALSLG--AQGICLGTRFVAS 201 (332)
Q Consensus 128 -~~g~D~ivv~G~eaGGh~~~~~~~~~ll~~i~~~~~~~~iPviaaGGI~~~~~v~~al~~G--A~gV~~GT~fl~t 201 (332)
+.|+++|.+.|+.-- .+......|..+.++.+..+. .+|+|..|-|-+.+|..+.+..+ .++|+++..-|.-
T Consensus 417 newg~savTlHGRSRq-QRYTK~AnWdYi~e~a~~ak~-~l~liGNGDi~S~eDw~~~~~~~p~v~svMIaRGALIK 491 (614)
T KOG2333|consen 417 NEWGASAVTLHGRSRQ-QRYTKSANWDYIEECADKAKS-ALPLIGNGDILSWEDWYERLNQNPNVDSVMIARGALIK 491 (614)
T ss_pred hccCcceEEecCchhh-hhhhcccChHHHHHHHHhccc-CceeEecCccccHHHHHHHhhcCCCcceEEeecccccc
Confidence 789999999876211 112334679999999988752 48999999999999998888876 8999999876544
|
|
| >TIGR00640 acid_CoA_mut_C methylmalonyl-CoA mutase C-terminal domain | Back alignment and domain information |
|---|
Probab=95.75 E-value=0.098 Score=42.64 Aligned_cols=80 Identities=25% Similarity=0.365 Sum_probs=51.6
Q ss_pred HHHhCCCEEEEe--cCCHHH-HHHHHHcCCCEEEEecCCCCcccCCCCchhhhHHHHHHHhCC---CCCcEEeecCcCCH
Q 020013 105 EAHSAGVKVVPQ--VGSFDE-ARKAVNAGVDAIIVQGREAGGHVIGQDGLISLLPMVVDLIGD---RDIPIIAAGGIVDA 178 (332)
Q Consensus 105 ~~~~~g~~v~~~--v~s~~~-a~~a~~~g~D~ivv~G~eaGGh~~~~~~~~~ll~~i~~~~~~---~~iPviaaGGI~~~ 178 (332)
.++..|..|+.. -.++++ +..+.+.++|+|++.+.. + ..+..++++.+.++. .+++|++.|.+ ..
T Consensus 25 ~l~~~GfeVi~lg~~~s~e~~v~aa~e~~adii~iSsl~-~-------~~~~~~~~~~~~L~~~g~~~i~vivGG~~-~~ 95 (132)
T TIGR00640 25 AYADLGFDVDVGPLFQTPEEIARQAVEADVHVVGVSSLA-G-------GHLTLVPALRKELDKLGRPDILVVVGGVI-PP 95 (132)
T ss_pred HHHhCCcEEEECCCCCCHHHHHHHHHHcCCCEEEEcCch-h-------hhHHHHHHHHHHHHhcCCCCCEEEEeCCC-Ch
Confidence 456778887743 234544 466778899999985432 1 224455666555432 14666665556 56
Q ss_pred HHHHHHHHcCcceee
Q 020013 179 RGYVAALSLGAQGIC 193 (332)
Q Consensus 179 ~~v~~al~~GA~gV~ 193 (332)
++..++.++|.|++.
T Consensus 96 ~~~~~l~~~Gvd~~~ 110 (132)
T TIGR00640 96 QDFDELKEMGVAEIF 110 (132)
T ss_pred HhHHHHHHCCCCEEE
Confidence 788999999998765
|
Methylmalonyl-CoA mutase (EC 5.4.99.2) catalyzes a reversible isomerization between L-methylmalonyl-CoA and succinyl-CoA. The enzyme uses an adenosylcobalamin cofactor. It may be a homodimer, as in mitochondrion, or a heterodimer with partially homologous beta chain that does not bind the adenosylcobalamin cofactor, as in Propionibacterium freudenreichii. The most similar archaeal sequences are separate chains, such as AF2215 and AF2219 of Archaeoglobus fulgidus, that correspond roughly to the first 500 and last 130 residues, respectively of known methylmalonyl-CoA mutases. This model describes the C-terminal domain subfamily. In a neighbor-joining tree (methylaspartate mutase S chain as the outgroup), AF2219 branches with a coenzyme B12-dependent enzyme known not to be 5.4.99.2. |
| >PRK13399 fructose-1,6-bisphosphate aldolase; Provisional | Back alignment and domain information |
|---|
Probab=95.66 E-value=1.1 Score=42.46 Aligned_cols=177 Identities=15% Similarity=0.202 Sum_probs=108.4
Q ss_pred CCCcHHHHHHHHhCC---Cceeec-C----CCCCCHHHHHHHHHHHHhhc-CCcEEEEeecCCCCHHHHHHHHhcCCcEE
Q 020013 21 DISGPELVAAVANAG---GLGLLR-A----PDWEAPDYLRDLIRKTRSLT-ERPFGVGVVLAFPHNENIKAILSEKVAVL 91 (332)
Q Consensus 21 g~s~~~la~avs~aG---glG~i~-~----~~~~~~e~~~~~i~~~r~~~-~~p~gvnl~~~~~~~~~~~~~~~~~~~~I 91 (332)
.+.+.+.+.++-+|. ..++|- . ..|...+.+...+..+.+.. +.|+.+++=-- .+.+.+..+++.|...|
T Consensus 24 N~~n~e~~~avi~AAEe~~sPvIlq~s~~~~~~~g~~~~~~~v~~~ae~~~~VPVaLHLDHg-~~~e~i~~Ai~~GFtSV 102 (347)
T PRK13399 24 NVNNMEQILAIMEAAEATDSPVILQASRGARKYAGDAMLRHMVLAAAEMYPDIPICLHQDHG-NSPATCQSAIRSGFTSV 102 (347)
T ss_pred EeCCHHHHHHHHHHHHHhCCCEEEECCcchhhhCCHHHHHHHHHHHHHhcCCCcEEEECCCC-CCHHHHHHHHhcCCCEE
Confidence 355667766666552 233331 1 12334555666666665555 36887775322 23567888889999888
Q ss_pred EEccCCCc--------H-------HHHHHHHhCCCEEEE-----------------------------ecCCHHHHHHHH
Q 020013 92 QVSWGEYS--------E-------ELVLEAHSAGVKVVP-----------------------------QVGSFDEARKAV 127 (332)
Q Consensus 92 ~~~~g~~~--------~-------~~i~~~~~~g~~v~~-----------------------------~v~s~~~a~~a~ 127 (332)
-+.....| + ++++..+..|+.|=. ..+++++|....
T Consensus 103 MiDgS~l~~~~~~~~~eeNI~~Trevve~Ah~~GvsVEaELG~igg~e~~~~g~ed~~~~~~~~~~~~~~T~PeeA~~Fv 182 (347)
T PRK13399 103 MMDGSLLADGKTPASYDYNVDVTRRVTEMAHAVGVSVEGELGCLGSLETGEAGEEDGVGAEGKLSHDQMLTDPDQAVDFV 182 (347)
T ss_pred EEeCCCCCCCCCccCHHHHHHHHHHHHHHHHHcCCeEEEEeeeccCcccccccccCCccccccccccccCCCHHHHHHHH
Confidence 77633222 2 345556655654411 134688888876
Q ss_pred H-cCCCEEEE-ecCCCCcccC--CCC---chhhhHHHHHHHhCCCCCcEEeecCcCCH----------------------
Q 020013 128 N-AGVDAIIV-QGREAGGHVI--GQD---GLISLLPMVVDLIGDRDIPIIAAGGIVDA---------------------- 178 (332)
Q Consensus 128 ~-~g~D~ivv-~G~eaGGh~~--~~~---~~~~ll~~i~~~~~~~~iPviaaGGI~~~---------------------- 178 (332)
+ .|+|.+-+ .|.-=|-..+ .+. -.+.++.+|.+.++ ++|++.-||=+.+
T Consensus 183 ~~TgvD~LAvaiGt~HG~Yk~~~~p~~~~L~~drl~eI~~~v~--~vPLVLHGgSGvp~~~~~~~~~~g~~~~~~~g~~~ 260 (347)
T PRK13399 183 QRTGVDALAIAIGTSHGAYKFTRKPDGDILAIDRIEEIHARLP--NTHLVMHGSSSVPQELQEIINAYGGKMKETYGVPV 260 (347)
T ss_pred HHHCcCEEhhhhccccCCcCCCCCCChhhccHHHHHHHHhhcC--CCCEEEeCCCCCCHHHHHHHHHhcCCccccCCCCH
Confidence 4 69998875 2331111111 111 34778899988773 5999999987766
Q ss_pred HHHHHHHHcCcceeeecccccc
Q 020013 179 RGYVAALSLGAQGICLGTRFVA 200 (332)
Q Consensus 179 ~~v~~al~~GA~gV~~GT~fl~ 200 (332)
+++.+++.+|..-|=++|.+..
T Consensus 261 e~~~kai~~GI~KINi~Tdl~~ 282 (347)
T PRK13399 261 EEIQRGIKHGVRKVNIDTDIRL 282 (347)
T ss_pred HHHHHHHHCCCeEEEeChHHHH
Confidence 7788888888888888887543
|
|
| >COG0149 TpiA Triosephosphate isomerase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=95.62 E-value=0.18 Score=45.54 Aligned_cols=120 Identities=15% Similarity=0.154 Sum_probs=71.9
Q ss_pred HHHHHHhcCCcEEEEc-------cCCCcH----HHHHHHHhCCCEEEEecCCHHHHH---------------HHHHcCC-
Q 020013 79 NIKAILSEKVAVLQVS-------WGEYSE----ELVLEAHSAGVKVVPQVGSFDEAR---------------KAVNAGV- 131 (332)
Q Consensus 79 ~~~~~~~~~~~~I~~~-------~g~~~~----~~i~~~~~~g~~v~~~v~s~~~a~---------------~a~~~g~- 131 (332)
..+.+.+.|++.+.++ ++. .. .-++.+++.|...+..++...+.+ .+...++
T Consensus 80 S~~mL~d~G~~~viiGHSERR~~~~E-~d~~i~~K~~aa~~~Gl~pIlCvGEtl~~reag~t~~v~~~Ql~~~l~~l~~~ 158 (251)
T COG0149 80 SAEMLKDLGAKYVLIGHSERRLYFGE-TDELIAKKVKAAKEAGLTPILCVGETLEEREAGKTLEVLKRQLAAALAALSPE 158 (251)
T ss_pred CHHHHHHcCCCEEEECcccccccccc-chHHHHHHHHHHHHCCCeEEEEcCCCHHHHhccChHHHHHHHHHHHHhhcCcc
Confidence 4567888999999885 232 23 234556778998888777443211 1223344
Q ss_pred --CEEEEecCCCCcccCCCC------chhhhHHHHHHHhCC--CCCcEEeecCcCCHHHHHHHH-HcCcceeeecccccc
Q 020013 132 --DAIIVQGREAGGHVIGQD------GLISLLPMVVDLIGD--RDIPIIAAGGIVDARGYVAAL-SLGAQGICLGTRFVA 200 (332)
Q Consensus 132 --D~ivv~G~eaGGh~~~~~------~~~~ll~~i~~~~~~--~~iPviaaGGI~~~~~v~~al-~~GA~gV~~GT~fl~ 200 (332)
++|-.+...+=|.. .+. .....++.+....-. .++||+..|+| ++.++.+.+ ..++||+.+|++-+.
T Consensus 159 ~~~vIAYEPvWAIGTG-~~at~~~a~~v~~~Ir~~~~~~~~~~~~v~IlYGGSV-~~~N~~e~~~~~~idG~LVGgAslk 236 (251)
T COG0149 159 ANIVIAYEPVWAIGTG-KSASPADAEEVHAFIRAVLAELFGAEEKVRILYGGSV-KPGNAAELAAQPDIDGALVGGASLK 236 (251)
T ss_pred cCeEEEECCHHHhcCC-CCCCHHHHHHHHHHHHHHHHHhcCCCCCeEEEEeCCc-ChhHHHHHhcCCCCCeEEEcceeec
Confidence 34444555554421 111 122333333332200 37999999999 677777766 489999999999775
Q ss_pred C
Q 020013 201 S 201 (332)
Q Consensus 201 t 201 (332)
.
T Consensus 237 a 237 (251)
T COG0149 237 A 237 (251)
T ss_pred c
Confidence 5
|
|
| >PRK07455 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional | Back alignment and domain information |
|---|
Probab=95.61 E-value=0.59 Score=40.43 Aligned_cols=100 Identities=20% Similarity=0.347 Sum_probs=68.3
Q ss_pred HHHHHHHhcCCcEEEEccCCC-cHHHHHHHHhCC--CEE-EEecCCHHHHHHHHHcCCCEEEEecCCCCcccCCCCchhh
Q 020013 78 ENIKAILSEKVAVLQVSWGEY-SEELVLEAHSAG--VKV-VPQVGSFDEARKAVNAGVDAIIVQGREAGGHVIGQDGLIS 153 (332)
Q Consensus 78 ~~~~~~~~~~~~~I~~~~g~~-~~~~i~~~~~~g--~~v-~~~v~s~~~a~~a~~~g~D~ivv~G~eaGGh~~~~~~~~~ 153 (332)
+.++.+++.|+++|++..-.+ ..++++.+++.. +.+ ...+.+.+++..+.+.|+|+|+. ||. + .+
T Consensus 28 ~~~~~~~~~Gv~~vqlr~k~~~~~e~~~~~~~~~~~~~~g~gtvl~~d~~~~A~~~gAdgv~~------p~~-~----~~ 96 (187)
T PRK07455 28 QMAEAVAAGGMRLIEITWNSDQPAELISQLREKLPECIIGTGTILTLEDLEEAIAAGAQFCFT------PHV-D----PE 96 (187)
T ss_pred HHHHHHHHCCCCEEEEeCCCCCHHHHHHHHHHhCCCcEEeEEEEEcHHHHHHHHHcCCCEEEC------CCC-C----HH
Confidence 456778889999999964332 346666665532 222 23455679999999999999987 453 2 12
Q ss_pred hHHHHHHHhCCCCCcEEeecCcCCHHHHHHHHHcCcceeee
Q 020013 154 LLPMVVDLIGDRDIPIIAAGGIVDARGYVAALSLGAQGICL 194 (332)
Q Consensus 154 ll~~i~~~~~~~~iPviaaGGI~~~~~v~~al~~GA~gV~~ 194 (332)
.++ ++... +++.+. | +.|+.++.++...|||-|-+
T Consensus 97 ~~~-~~~~~---~~~~i~-G-~~t~~e~~~A~~~Gadyv~~ 131 (187)
T PRK07455 97 LIE-AAVAQ---DIPIIP-G-ALTPTEIVTAWQAGASCVKV 131 (187)
T ss_pred HHH-HHHHc---CCCEEc-C-cCCHHHHHHHHHCCCCEEEE
Confidence 222 23333 566554 4 89999999999999999886
|
|
| >TIGR00875 fsa_talC_mipB fructose-6-phosphate aldolase, TalC/MipB family | Back alignment and domain information |
|---|
Probab=95.61 E-value=0.6 Score=41.29 Aligned_cols=137 Identities=16% Similarity=0.174 Sum_probs=84.5
Q ss_pred HHHHHHHhhcCCcEEEEeecCCCCHHHHH---HHHhcCCcEEE-EccCCCcHHHHHHHHhCCCEEEEe-cCCHHHHHHHH
Q 020013 53 DLIRKTRSLTERPFGVGVVLAFPHNENIK---AILSEKVAVLQ-VSWGEYSEELVLEAHSAGVKVVPQ-VGSFDEARKAV 127 (332)
Q Consensus 53 ~~i~~~r~~~~~p~gvnl~~~~~~~~~~~---~~~~~~~~~I~-~~~g~~~~~~i~~~~~~g~~v~~~-v~s~~~a~~a~ 127 (332)
+.++++++..+.++-+.++..+ .++.++ .+.+....++. +..-..--+.++.+++.|+++-.+ +-|.+++..+.
T Consensus 41 ~~~~~i~~~~~g~vs~qv~~~~-~~~mi~~a~~l~~~~~~i~iKIP~T~~Gl~A~~~L~~~Gi~v~~T~vfs~~Qa~~Aa 119 (213)
T TIGR00875 41 EVLKEIQEAVEGPVSAETISLD-AEGMVEEAKELAKLAPNIVVKIPMTSEGLKAVKILKKEGIKTNVTLVFSAAQALLAA 119 (213)
T ss_pred HHHHHHHHhcCCcEEEEEeeCC-HHHHHHHHHHHHHhCCCeEEEeCCCHHHHHHHHHHHHCCCceeEEEecCHHHHHHHH
Confidence 3445555555667777765432 233333 23333444433 332111135677888899998755 67999999999
Q ss_pred HcCCCEEEE-ecC-CCCcccCCCCchhhhHHHHHHHhCC--CCCcEEeecCcCCHHHHHHHHHcCcceeeecc
Q 020013 128 NAGVDAIIV-QGR-EAGGHVIGQDGLISLLPMVVDLIGD--RDIPIIAAGGIVDARGYVAALSLGAQGICLGT 196 (332)
Q Consensus 128 ~~g~D~ivv-~G~-eaGGh~~~~~~~~~ll~~i~~~~~~--~~iPviaaGGI~~~~~v~~al~~GA~gV~~GT 196 (332)
++|+|+|-. -|+ +.-|+ ..+.++.++.+.++. .+.. |.+..+.+.+++.++..+|+|.|-+.-
T Consensus 120 ~aGa~yispyvgRi~d~g~-----dg~~~v~~~~~~~~~~~~~tk-IlaAS~r~~~~v~~~~~~G~d~vTip~ 186 (213)
T TIGR00875 120 KAGATYVSPFVGRLDDIGG-----DGMKLIEEVKTIFENHAPDTE-VIAASVRHPRHVLEAALIGADIATMPL 186 (213)
T ss_pred HcCCCEEEeecchHHHcCC-----CHHHHHHHHHHHHHHcCCCCE-EEEeccCCHHHHHHHHHcCCCEEEcCH
Confidence 999999875 333 11122 235666666665432 2455 555667799999999999999998643
|
This model represents a family that includes the E. coli transaldolase homologs TalC and MipB, both shown to be fructose-6-phosphate aldolases rather than transaldolases as previously thought. It is related to but distinct from the transaldolase family of E. coli TalA and TalB. The member from Bacillus subtilis becomes phosphorylated during early stationary phase but not during exponential growth. |
| >PRK09140 2-dehydro-3-deoxy-6-phosphogalactonate aldolase; Reviewed | Back alignment and domain information |
|---|
Probab=95.58 E-value=0.31 Score=42.86 Aligned_cols=100 Identities=15% Similarity=0.193 Sum_probs=67.5
Q ss_pred HHHHHHHhcCCcEEEEccCCC-cHHHHHHHHh-CCC--EEE-EecCCHHHHHHHHHcCCCEEEEecCCCCcccCCCCchh
Q 020013 78 ENIKAILSEKVAVLQVSWGEY-SEELVLEAHS-AGV--KVV-PQVGSFDEARKAVNAGVDAIIVQGREAGGHVIGQDGLI 152 (332)
Q Consensus 78 ~~~~~~~~~~~~~I~~~~g~~-~~~~i~~~~~-~g~--~v~-~~v~s~~~a~~a~~~g~D~ivv~G~eaGGh~~~~~~~~ 152 (332)
+.++.+.+.|+..+++.+-.+ ..+.++.+++ .+. .+. .++.+.+++..+.++|+|+++. +|. ..
T Consensus 26 ~~~~a~~~gGi~~iEvt~~~~~~~~~i~~l~~~~~~~~~iGaGTV~~~~~~~~a~~aGA~fivs------p~~-----~~ 94 (206)
T PRK09140 26 AHVGALIEAGFRAIEIPLNSPDPFDSIAALVKALGDRALIGAGTVLSPEQVDRLADAGGRLIVT------PNT-----DP 94 (206)
T ss_pred HHHHHHHHCCCCEEEEeCCCccHHHHHHHHHHHcCCCcEEeEEecCCHHHHHHHHHcCCCEEEC------CCC-----CH
Confidence 446677888999999875432 2345666654 342 332 4577899999999999999987 221 12
Q ss_pred hhHHHHHHHhCCCCCcEEeecCcCCHHHHHHHHHcCcceeee
Q 020013 153 SLLPMVVDLIGDRDIPIIAAGGIVDARGYVAALSLGAQGICL 194 (332)
Q Consensus 153 ~ll~~i~~~~~~~~iPviaaGGI~~~~~v~~al~~GA~gV~~ 194 (332)
.++.... .. ++|++.. +.|++++.++..+|||-+.+
T Consensus 95 ~v~~~~~-~~---~~~~~~G--~~t~~E~~~A~~~Gad~vk~ 130 (206)
T PRK09140 95 EVIRRAV-AL---GMVVMPG--VATPTEAFAALRAGAQALKL 130 (206)
T ss_pred HHHHHHH-HC---CCcEEcc--cCCHHHHHHHHHcCCCEEEE
Confidence 2333222 22 5555553 78999999999999999985
|
|
| >PRK00278 trpC indole-3-glycerol-phosphate synthase; Reviewed | Back alignment and domain information |
|---|
Probab=95.55 E-value=0.44 Score=43.46 Aligned_cols=120 Identities=18% Similarity=0.233 Sum_probs=79.5
Q ss_pred CccceecCCCCCCCCcHHHHHHHHhCCCceeecCCCCCCHHHHHHHHHHHHhhcCCcEEEEeecCCCCHHHHHHHHhcCC
Q 020013 9 FEYGIVQAPLGPDISGPELVAAVANAGGLGLLRAPDWEAPDYLRDLIRKTRSLTERPFGVGVVLAFPHNENIKAILSEKV 88 (332)
Q Consensus 9 ~~~Pii~apM~~g~s~~~la~avs~aGglG~i~~~~~~~~e~~~~~i~~~r~~~~~p~gvnl~~~~~~~~~~~~~~~~~~ 88 (332)
++.||+. .. .+.++-.+.....+|+=+++-.....+++.+++.++.++++ |...++.-.+.+.++.+.+.|+
T Consensus 110 v~iPvl~--kd-fi~~~~qi~~a~~~GAD~VlLi~~~l~~~~l~~li~~a~~l-----Gl~~lvevh~~~E~~~A~~~ga 181 (260)
T PRK00278 110 VSLPVLR--KD-FIIDPYQIYEARAAGADAILLIVAALDDEQLKELLDYAHSL-----GLDVLVEVHDEEELERALKLGA 181 (260)
T ss_pred cCCCEEe--ee-ecCCHHHHHHHHHcCCCEEEEEeccCCHHHHHHHHHHHHHc-----CCeEEEEeCCHHHHHHHHHcCC
Confidence 4679995 33 47788888888888864444332334677888888888763 4554443333555677888999
Q ss_pred cEEEEccC-----CCcHHHHHHHHhC---CCEEE--EecCCHHHHHHHHHcCCCEEEE
Q 020013 89 AVLQVSWG-----EYSEELVLEAHSA---GVKVV--PQVGSFDEARKAVNAGVDAIIV 136 (332)
Q Consensus 89 ~~I~~~~g-----~~~~~~i~~~~~~---g~~v~--~~v~s~~~a~~a~~~g~D~ivv 136 (332)
++|-++-- .+..+....+... ..+++ ..+.+++++..+.+.|+|+|++
T Consensus 182 diIgin~rdl~~~~~d~~~~~~l~~~~p~~~~vIaegGI~t~ed~~~~~~~Gad~vlV 239 (260)
T PRK00278 182 PLIGINNRNLKTFEVDLETTERLAPLIPSDRLVVSESGIFTPEDLKRLAKAGADAVLV 239 (260)
T ss_pred CEEEECCCCcccccCCHHHHHHHHHhCCCCCEEEEEeCCCCHHHHHHHHHcCCCEEEE
Confidence 99987620 1122333444332 23554 3567999999999999999998
|
|
| >PRK07807 inosine 5-monophosphate dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=95.52 E-value=0.055 Score=53.73 Aligned_cols=72 Identities=31% Similarity=0.484 Sum_probs=52.6
Q ss_pred HHHHHHHHcCCCEEEEecCCCCcccCCCCchhhhHHHHHHHhCCCCCcEEeecCcCCHHHHHHHHHcCcceee--ecccc
Q 020013 121 DEARKAVNAGVDAIIVQGREAGGHVIGQDGLISLLPMVVDLIGDRDIPIIAAGGIVDARGYVAALSLGAQGIC--LGTRF 198 (332)
Q Consensus 121 ~~a~~a~~~g~D~ivv~G~eaGGh~~~~~~~~~ll~~i~~~~~~~~iPviaaGGI~~~~~v~~al~~GA~gV~--~GT~f 198 (332)
+.+....+.|+|.|+++-. -||. ...+.+++++++.++ +++|| +|.|.|.+.+..++.+|||+|- ||+.=
T Consensus 230 ~~a~~Lv~aGvd~i~~D~a--~~~~---~~~~~~i~~ik~~~p--~~~v~-agnv~t~~~a~~l~~aGad~v~vgig~gs 301 (479)
T PRK07807 230 AKARALLEAGVDVLVVDTA--HGHQ---EKMLEALRAVRALDP--GVPIV-AGNVVTAEGTRDLVEAGADIVKVGVGPGA 301 (479)
T ss_pred HHHHHHHHhCCCEEEEecc--CCcc---HHHHHHHHHHHHHCC--CCeEE-eeccCCHHHHHHHHHcCCCEEEECccCCc
Confidence 3445567889999999754 3442 356788888888764 45554 6999999999999999999876 44533
Q ss_pred cc
Q 020013 199 VA 200 (332)
Q Consensus 199 l~ 200 (332)
++
T Consensus 302 ic 303 (479)
T PRK07807 302 MC 303 (479)
T ss_pred cc
Confidence 33
|
|
| >PF01645 Glu_synthase: Conserved region in glutamate synthase; InterPro: IPR002932 Ferredoxin-dependent glutamate synthases have been implicated in a number of functions including photorespiration in Arabidopsis where they may also play a role in primary nitrogen assimilation in roots [] | Back alignment and domain information |
|---|
Probab=95.49 E-value=0.22 Score=47.67 Aligned_cols=101 Identities=23% Similarity=0.334 Sum_probs=60.2
Q ss_pred CceeecCC---CCCCHHHHHHHHHHHHhhc-CCcEEEEeecCCCCHHHHHHHHhcCCcEEEEcc----------------
Q 020013 36 GLGLLRAP---DWEAPDYLRDLIRKTRSLT-ERPFGVGVVLAFPHNENIKAILSEKVAVLQVSW---------------- 95 (332)
Q Consensus 36 glG~i~~~---~~~~~e~~~~~i~~~r~~~-~~p~gvnl~~~~~~~~~~~~~~~~~~~~I~~~~---------------- 95 (332)
|...+... ...++|++.+.|.++|+.+ .+|+++.+......+.....+.+.++|+|.+..
T Consensus 172 g~~~iSP~~h~di~s~edl~~~I~~Lr~~~~~~pVgvKl~~~~~~~~~~~~~~~ag~D~ItIDG~~GGTGAap~~~~d~~ 251 (368)
T PF01645_consen 172 GVDLISPPPHHDIYSIEDLAQLIEELRELNPGKPVGVKLVAGRGVEDIAAGAAKAGADFITIDGAEGGTGAAPLTSMDHV 251 (368)
T ss_dssp T--EE--SS-TT-SSHHHHHHHHHHHHHH-TTSEEEEEEE-STTHHHHHHHHHHTT-SEEEEE-TT---SSEECCHHHHC
T ss_pred CCccccCCCCCCcCCHHHHHHHHHHHHhhCCCCcEEEEECCCCcHHHHHHhhhhccCCEEEEeCCCCCCCCCchhHHhhC
Confidence 55666432 2457899999999999998 899999998765533333347889999999862
Q ss_pred CCCcH----HHHHHHHhCC----CEEEE--ecCCHHHHHHHHHcCCCEEEE
Q 020013 96 GEYSE----ELVLEAHSAG----VKVVP--QVGSFDEARKAVNAGVDAIIV 136 (332)
Q Consensus 96 g~~~~----~~i~~~~~~g----~~v~~--~v~s~~~a~~a~~~g~D~ivv 136 (332)
|.|.. +..+.+.+.| +.++. .+.+..++.+++..|+|+|-+
T Consensus 252 GlP~~~~l~~a~~~L~~~glr~~V~Li~sGgl~t~~dv~kalaLGAD~v~i 302 (368)
T PF01645_consen 252 GLPTEYALARAHQALVKNGLRDRVSLIASGGLRTGDDVAKALALGADAVYI 302 (368)
T ss_dssp ---HHHHHHHHHHHHHCTT-CCCSEEEEESS--SHHHHHHHHHCT-SEEE-
T ss_pred CCcHHHHHHHHHHHHHHcCCCCceEEEEeCCccCHHHHHHHHhcCCCeeEe
Confidence 22111 1223344433 44553 466889999999999999876
|
This region is expressed as a seperate subunit in the glutamate synthase alpha subunit from archaebacteria, or part of a large multidomain enzyme in other organisms. The aligned region of these proteins contains a putative FMN binding site and Fe-S cluster.; GO: 0015930 glutamate synthase activity, 0016638 oxidoreductase activity, acting on the CH-NH2 group of donors, 0006537 glutamate biosynthetic process, 0055114 oxidation-reduction process; PDB: 1EA0_A 2VDC_E 1OFE_A 1LLW_A 1OFD_A 1LLZ_A 1LM1_A. |
| >TIGR00734 hisAF_rel hisA/hisF family protein | Back alignment and domain information |
|---|
Probab=95.49 E-value=0.067 Score=47.59 Aligned_cols=78 Identities=19% Similarity=0.161 Sum_probs=55.7
Q ss_pred cCCH-HHHHHHHHcCCCEEEEecCCC-CcccCCCCchhhhHHHHHHHhCCCCCcEEeecCcCCHHHHHHHHH--cCccee
Q 020013 117 VGSF-DEARKAVNAGVDAIIVQGREA-GGHVIGQDGLISLLPMVVDLIGDRDIPIIAAGGIVDARGYVAALS--LGAQGI 192 (332)
Q Consensus 117 v~s~-~~a~~a~~~g~D~ivv~G~ea-GGh~~~~~~~~~ll~~i~~~~~~~~iPviaaGGI~~~~~v~~al~--~GA~gV 192 (332)
..++ +.|+...+.|+|.+.+---++ -|+ ...+.++.++.+ .+|+...|||.+.+++..++. .||+-|
T Consensus 35 ~~dP~~~a~~~~~~g~~~l~ivDLd~~~~~----~~n~~~i~~i~~-----~~~v~vgGGirs~e~~~~~~~~l~~a~rv 105 (221)
T TIGR00734 35 SSSPDDAAKVIEEIGARFIYIADLDRIVGL----GDNFSLLSKLSK-----RVELIADCGVRSPEDLETLPFTLEFASRV 105 (221)
T ss_pred CCCHHHHHHHHHHcCCCEEEEEEcccccCC----cchHHHHHHHHh-----hCcEEEcCccCCHHHHHHHHhhhccceEE
Confidence 3444 556666778999888733221 122 234677888776 369999999999999999865 269999
Q ss_pred eeccccccCcc
Q 020013 193 CLGTRFVASEE 203 (332)
Q Consensus 193 ~~GT~fl~t~E 203 (332)
++||..+..+|
T Consensus 106 vigT~a~~~p~ 116 (221)
T TIGR00734 106 VVATETLDITE 116 (221)
T ss_pred eecChhhCCHH
Confidence 99999886543
|
This alignment models a family of proteins found so far in three archaeal species: Methanobacterium thermoautotrophicum, Methanococcus jannaschii, and Archaeoglobus fulgidus. This protein is homologous to phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase (HisA) and, with lower similarity, to the cyclase HisF, both of which are enzymes of histidine biosynthesis. Each species with this protein also encodes HisA. The function of this protein is unknown. |
| >cd03174 DRE_TIM_metallolyase DRE-TIM metallolyase superfamily | Back alignment and domain information |
|---|
Probab=95.45 E-value=1.1 Score=40.36 Aligned_cols=158 Identities=20% Similarity=0.294 Sum_probs=94.6
Q ss_pred HHHHHHHhCCCceeecCCCCCCH------HHHHHHHHHHHhhc-CCcEEEEeecCCCCHHHHHHHHhcCCcEEEEccCCC
Q 020013 26 ELVAAVANAGGLGLLRAPDWEAP------DYLRDLIRKTRSLT-ERPFGVGVVLAFPHNENIKAILSEKVAVLQVSWGEY 98 (332)
Q Consensus 26 ~la~avs~aGglG~i~~~~~~~~------e~~~~~i~~~r~~~-~~p~gvnl~~~~~~~~~~~~~~~~~~~~I~~~~g~~ 98 (332)
+++....++| +..|..++..++ +...+.++++++.. +.++. .+... ..+.++.+.+.+++.|.+.....
T Consensus 23 ~i~~~L~~~G-V~~IEvg~~~~~~~~p~~~~~~~~i~~l~~~~~~~~~~--~l~~~-~~~~i~~a~~~g~~~i~i~~~~s 98 (265)
T cd03174 23 EIAEALDEAG-VDSIEVGSGASPKAVPQMEDDWEVLRAIRKLVPNVKLQ--ALVRN-REKGIERALEAGVDEVRIFDSAS 98 (265)
T ss_pred HHHHHHHHcC-CCEEEeccCcCccccccCCCHHHHHHHHHhccCCcEEE--EEccC-chhhHHHHHhCCcCEEEEEEecC
Confidence 3444454555 444443322222 33455666666543 22232 22222 25678889999999998764332
Q ss_pred c------------------HHHHHHHHhCCCEEEEec---CC--------HHHHHHHHHcCCCEEEEecCCCCcccCCCC
Q 020013 99 S------------------EELVLEAHSAGVKVVPQV---GS--------FDEARKAVNAGVDAIIVQGREAGGHVIGQD 149 (332)
Q Consensus 99 ~------------------~~~i~~~~~~g~~v~~~v---~s--------~~~a~~a~~~g~D~ivv~G~eaGGh~~~~~ 149 (332)
+ .+.++.+++.|+.+...+ +. .+.++.+.+.|+|.|.+.-. -|.. .+.
T Consensus 99 ~~~~~~~~~~~~~~~~~~~~~~i~~a~~~G~~v~~~~~~~~~~~~~~~~l~~~~~~~~~~g~~~i~l~Dt--~G~~-~P~ 175 (265)
T cd03174 99 ETHSRKNLNKSREEDLENAEEAIEAAKEAGLEVEGSLEDAFGCKTDPEYVLEVAKALEEAGADEISLKDT--VGLA-TPE 175 (265)
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHHHHHHCCCeEEEEEEeecCCCCCHHHHHHHHHHHHHcCCCEEEechh--cCCc-CHH
Confidence 0 133455677888876443 33 34556678899999988544 2332 333
Q ss_pred chhhhHHHHHHHhCCCCCcEEeec----CcCCHHHHHHHHHcCcceee
Q 020013 150 GLISLLPMVVDLIGDRDIPIIAAG----GIVDARGYVAALSLGAQGIC 193 (332)
Q Consensus 150 ~~~~ll~~i~~~~~~~~iPviaaG----GI~~~~~v~~al~~GA~gV~ 193 (332)
....++..+++..+ ++|+-.-+ |.+ ..+..+|+.+||+.|-
T Consensus 176 ~v~~li~~l~~~~~--~~~~~~H~Hn~~gla-~an~laA~~aG~~~id 220 (265)
T cd03174 176 EVAELVKALREALP--DVPLGLHTHNTLGLA-VANSLAALEAGADRVD 220 (265)
T ss_pred HHHHHHHHHHHhCC--CCeEEEEeCCCCChH-HHHHHHHHHcCCCEEE
Confidence 45667777777663 38888888 884 5777888899987654
|
The DRE-TIM metallolyase superfamily includes 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues that cap the core of the barrel. In addition, the catalytic site includes three invariant residues - an aspartate (D), an arginine (R), and a glutamate (E) - which is the basis for the domain name "DRE-TIM". |
| >PRK09196 fructose-1,6-bisphosphate aldolase; Reviewed | Back alignment and domain information |
|---|
Probab=95.34 E-value=1.6 Score=41.42 Aligned_cols=178 Identities=17% Similarity=0.172 Sum_probs=107.8
Q ss_pred CCCcHHHHHHHHhCC---Cceeec-C----CCCCCHHHHHHHHHHHHhhcC-CcEEEEeecCCCCHHHHHHHHhcCCcEE
Q 020013 21 DISGPELVAAVANAG---GLGLLR-A----PDWEAPDYLRDLIRKTRSLTE-RPFGVGVVLAFPHNENIKAILSEKVAVL 91 (332)
Q Consensus 21 g~s~~~la~avs~aG---glG~i~-~----~~~~~~e~~~~~i~~~r~~~~-~p~gvnl~~~~~~~~~~~~~~~~~~~~I 91 (332)
.+.+.+.+.++-+|- ..++|- . ..+...+.+...+..+.+... .|+.+++=-- .+.+.+..+++.|...|
T Consensus 24 N~~n~e~~~avi~AAee~~sPvIiq~s~~~~~~~g~~~~~~~~~~~a~~~~~VPValHLDHg-~~~e~i~~ai~~GftSV 102 (347)
T PRK09196 24 NVNNLEQVQAIMEAADETDSPVILQASAGARKYAGEPFLRHLILAAVEEYPHIPVVMHQDHG-NSPATCQRAIQLGFTSV 102 (347)
T ss_pred eeCCHHHHHHHHHHHHHhCCCEEEECCccHhhhCCHHHHHHHHHHHHHhCCCCcEEEECCCC-CCHHHHHHHHHcCCCEE
Confidence 456777777776553 233331 1 013344556666666655443 6888775322 23567788888999888
Q ss_pred EEccCCC-------c-H-------HHHHHHHhCCCEEEE-----------------------------ecCCHHHHHHHH
Q 020013 92 QVSWGEY-------S-E-------ELVLEAHSAGVKVVP-----------------------------QVGSFDEARKAV 127 (332)
Q Consensus 92 ~~~~g~~-------~-~-------~~i~~~~~~g~~v~~-----------------------------~v~s~~~a~~a~ 127 (332)
-+..... | + ++++.++..|+.|=. ..+++++|+...
T Consensus 103 MiDgS~l~~~~~~~p~eENI~~Tkevve~Ah~~Gv~VEaELG~vgg~e~~~~g~~~~~~~~~~~~~~~~~T~PeeA~~Fv 182 (347)
T PRK09196 103 MMDGSLKADGKTPASYEYNVDVTRKVVEMAHACGVSVEGELGCLGSLETGMGGEEDGHGAEGKLSHDQLLTDPEEAADFV 182 (347)
T ss_pred EecCCCCcccCCCCCHHHHHHHHHHHHHHHHHcCCeEEEEEeeccCccccccccccCcccccccchhhcCCCHHHHHHHH
Confidence 7763322 2 2 345556666654411 135688888876
Q ss_pred -HcCCCEEEE-ecCCCCcccC--CC---CchhhhHHHHHHHhCCCCCcEEeecCcCCH----------------------
Q 020013 128 -NAGVDAIIV-QGREAGGHVI--GQ---DGLISLLPMVVDLIGDRDIPIIAAGGIVDA---------------------- 178 (332)
Q Consensus 128 -~~g~D~ivv-~G~eaGGh~~--~~---~~~~~ll~~i~~~~~~~~iPviaaGGI~~~---------------------- 178 (332)
+.|+|.+-+ .|.-=|-... .+ .-.+.++.+|.+.++ ++|++.-||=+.+
T Consensus 183 ~~TgvD~LAvaiGT~HG~Yk~~~~p~~~~LdfdrL~eI~~~v~--~vPLVLHGgSG~~~~~~~~~~~~g~~~~~~~G~~~ 260 (347)
T PRK09196 183 KKTQVDALAIAIGTSHGAYKFTRKPTGDVLAIDRIKEIHARLP--NTHLVMHGSSSVPQELLDIINEYGGDMPETYGVPV 260 (347)
T ss_pred HHhCcCeEhhhhccccCCCCCCCCCChhhccHHHHHHHHhcCC--CCCEEEeCCCCCCHHHHHHHHHhcCCccccCCCCH
Confidence 469998876 2321111111 11 135788999988773 5999999887654
Q ss_pred HHHHHHHHcCcceeeeccccccC
Q 020013 179 RGYVAALSLGAQGICLGTRFVAS 201 (332)
Q Consensus 179 ~~v~~al~~GA~gV~~GT~fl~t 201 (332)
+++.+++.+|..-|=++|.+..+
T Consensus 261 e~i~~ai~~GI~KINi~Tdl~~a 283 (347)
T PRK09196 261 EEIQEGIKHGVRKVNIDTDLRLA 283 (347)
T ss_pred HHHHHHHHCCCceEEeChHHHHH
Confidence 56778888888888887775433
|
|
| >PRK14567 triosephosphate isomerase; Provisional | Back alignment and domain information |
|---|
Probab=95.34 E-value=0.21 Score=45.23 Aligned_cols=119 Identities=16% Similarity=0.206 Sum_probs=69.2
Q ss_pred HHHHHHHhcCCcEEEEc-------cCCCcHH---HHHHHHhCCCEEEEecCCHHHHHH--------------HHH-----
Q 020013 78 ENIKAILSEKVAVLQVS-------WGEYSEE---LVLEAHSAGVKVVPQVGSFDEARK--------------AVN----- 128 (332)
Q Consensus 78 ~~~~~~~~~~~~~I~~~-------~g~~~~~---~i~~~~~~g~~v~~~v~s~~~a~~--------------a~~----- 128 (332)
-..+.+.+.|++++.++ |+..... -++.+.+.|+.++..++...+.+. .++
T Consensus 76 vS~~mLkd~G~~yviiGHSERR~~f~Etd~~v~~Kv~~al~~gl~pI~CiGEt~eere~g~~~~vv~~Ql~~~l~~i~~~ 155 (253)
T PRK14567 76 ISARMLEDIGCDYLLIGHSERRSLFAESDEDVFKKLNKIIDTTITPVVCIGESLDDRQSGKLKQVLATQLSLILENLSVE 155 (253)
T ss_pred CCHHHHHHcCCCEEEECcccccCccCCCHHHHHHHHHHHHHCCCEEEEEcCCcHHHHHcCCHHHHHHHHHHHHHccCCHH
Confidence 34667888999999885 3432221 233455689988887874332221 111
Q ss_pred cCCCEEEE-ecCCCCcccCCCCchh-------hhHHHHHHHhC---CCCCcEEeecCcCCHHHHHHHHHcC-cceeeecc
Q 020013 129 AGVDAIIV-QGREAGGHVIGQDGLI-------SLLPMVVDLIG---DRDIPIIAAGGIVDARGYVAALSLG-AQGICLGT 196 (332)
Q Consensus 129 ~g~D~ivv-~G~eaGGh~~~~~~~~-------~ll~~i~~~~~---~~~iPviaaGGI~~~~~v~~al~~G-A~gV~~GT 196 (332)
.....+++ +..-+=|. |...+. ..+++....+. ..+++|+..|+| +++|+.+.++.+ .||+.+|+
T Consensus 156 ~~~~ivIAYEPvWAIGT--G~~as~e~i~~~~~~IR~~l~~~~~~~a~~v~IlYGGSV-~~~N~~~l~~~~diDG~LVGg 232 (253)
T PRK14567 156 QLAKVVIAYEPVWAIGT--GVVASLEQIQETHQFIRSLLAKVDERLAKNIKIVYGGSL-KAENAKDILSLPDVDGGLIGG 232 (253)
T ss_pred HhCCEEEEECCHHHhCC--CCCCCHHHHHHHHHHHHHHHHhhcccccccceEEEcCcC-CHHHHHHHHcCCCCCEEEeeh
Confidence 01223444 33333332 111222 22332221111 126899999999 999999999988 99999999
Q ss_pred ccc
Q 020013 197 RFV 199 (332)
Q Consensus 197 ~fl 199 (332)
+-+
T Consensus 233 asL 235 (253)
T PRK14567 233 ASL 235 (253)
T ss_pred hhh
Confidence 976
|
|
| >TIGR00419 tim triosephosphate isomerase | Back alignment and domain information |
|---|
Probab=95.34 E-value=0.32 Score=42.74 Aligned_cols=120 Identities=14% Similarity=0.125 Sum_probs=68.7
Q ss_pred HHHHHHHhcCCcEEEEcc-----CCC-cHHHHHHHHhCCCEEEEecCCHHHHHHHHHcCCCEEEEecCCCCcccCCCCch
Q 020013 78 ENIKAILSEKVAVLQVSW-----GEY-SEELVLEAHSAGVKVVPQVGSFDEARKAVNAGVDAIIVQGREAGGHVIGQDGL 151 (332)
Q Consensus 78 ~~~~~~~~~~~~~I~~~~-----g~~-~~~~i~~~~~~g~~v~~~v~s~~~a~~a~~~g~D~ivv~G~eaGGh~~~~~~~ 151 (332)
-..+.+.+.|++.+.++. +.. ...-++.+.+.|+..+..+..+.+.+.......++|-.+...+=|. |...+
T Consensus 72 vS~~mLkd~G~~~viiGHSERRf~Etdi~~Kv~~a~~~gl~~IvCi~~v~~q~~~~~~~~~vIAYEPvWAIGt--G~~as 149 (205)
T TIGR00419 72 ISAEMLKDIGAKGTLINHSERRMKLADIEKKIARLKELGLTSVVCTNNVLTTAAAAALEPDVVAVEPPELIGT--GIPVS 149 (205)
T ss_pred CCHHHHHHcCCCEEEECcccCCCCccHHHHHHHHHHHCCCEEEEEEHHHHHHHHhhhhcCeEEEECCHHHhCC--CCCCC
Confidence 346678889999998852 211 1122345567899888777555443333223333443444444332 11111
Q ss_pred hhhHHHHHHHh---C--CCCCcEEeecCcCCHHHHHHHHH-cCcceeeecccccc
Q 020013 152 ISLLPMVVDLI---G--DRDIPIIAAGGIVDARGYVAALS-LGAQGICLGTRFVA 200 (332)
Q Consensus 152 ~~ll~~i~~~~---~--~~~iPviaaGGI~~~~~v~~al~-~GA~gV~~GT~fl~ 200 (332)
..-..++.+.+ + ..+++|+..|+| +++++.+.+. .+.||+.+|++-+.
T Consensus 150 ~~~~~~v~~~ir~~~~~~~~~~IlYGGSV-~~~N~~~l~~~~~iDG~LvG~Asl~ 203 (205)
T TIGR00419 150 PAQPEVVHGSVRAVKEVNESVRVLCGAGI-STGEDAELAAQLGAEGVLLASGSLK 203 (205)
T ss_pred HHHHHHHHHHHHhhhhhcCCceEEEeCCC-CHHHHHHHhcCCCCCEEEEeeeeec
Confidence 11111111111 1 126899999999 7788887765 78999999999773
|
Triosephosphate isomerase (tim/TPIA) is the glycolytic enzyme that catalyzes the reversible interconversion of glyceraldehyde 3-phosphate and dihydroxyacetone phosphate. The active site of the enzyme is located between residues 240-258 of the model ([AV]-Y-E-P-[LIVM]-W-[SA]-I-G-T-[GK]) with E being the active site residue. There is a slight deviation from this sequence within the archeal members of this family. |
| >PRK15452 putative protease; Provisional | Back alignment and domain information |
|---|
Probab=95.34 E-value=0.43 Score=46.98 Aligned_cols=111 Identities=16% Similarity=0.144 Sum_probs=73.3
Q ss_pred eecCCCCHHHHHHHHhcCCcEEEEccCC---------C----cHHHHHHHHhCCCEEEEecCC---HHH-------HHHH
Q 020013 70 VVLAFPHNENIKAILSEKVAVLQVSWGE---------Y----SEELVLEAHSAGVKVVPQVGS---FDE-------ARKA 126 (332)
Q Consensus 70 l~~~~~~~~~~~~~~~~~~~~I~~~~g~---------~----~~~~i~~~~~~g~~v~~~v~s---~~~-------a~~a 126 (332)
|..+....+.++.+++.|+|.|.++... + ..+.++.+++.|+++...+++ .++ ...+
T Consensus 6 Llapag~~e~l~aAi~~GADaVY~G~~~~~~R~~~~~f~~edl~eav~~ah~~g~kvyvt~n~i~~e~el~~~~~~l~~l 85 (443)
T PRK15452 6 LLSPAGTLKNMRYAFAYGADAVYAGQPRYSLRVRNNEFNHENLALGINEAHALGKKFYVVVNIAPHNAKLKTFIRDLEPV 85 (443)
T ss_pred EEEECCCHHHHHHHHHCCCCEEEECCCccchhhhccCCCHHHHHHHHHHHHHcCCEEEEEecCcCCHHHHHHHHHHHHHH
Confidence 4444445788999999999999985321 1 123456678899999876542 222 2345
Q ss_pred HHcCCCEEEEecCCCCcccCCCCchhhhHHHHHHHhCCCCCcEEeec--CcCCHHHHHHHHHcCcceeeec
Q 020013 127 VNAGVDAIIVQGREAGGHVIGQDGLISLLPMVVDLIGDRDIPIIAAG--GIVDARGYVAALSLGAQGICLG 195 (332)
Q Consensus 127 ~~~g~D~ivv~G~eaGGh~~~~~~~~~ll~~i~~~~~~~~iPviaaG--GI~~~~~v~~al~~GA~gV~~G 195 (332)
.+.|+|+|+++.. .++..+++..+ ++|+.++- .|.|...+..+..+|++.|++.
T Consensus 86 ~~~gvDgvIV~d~-------------G~l~~~ke~~p--~l~ih~stqlni~N~~a~~f~~~lG~~rvvLS 141 (443)
T PRK15452 86 IAMKPDALIMSDP-------------GLIMMVREHFP--EMPIHLSVQANAVNWATVKFWQQMGLTRVILS 141 (443)
T ss_pred HhCCCCEEEEcCH-------------HHHHHHHHhCC--CCeEEEEecccCCCHHHHHHHHHCCCcEEEEC
Confidence 5789999999432 23333444332 57888766 4677788888888999877763
|
|
| >PRK08673 3-deoxy-7-phosphoheptulonate synthase; Reviewed | Back alignment and domain information |
|---|
Probab=95.32 E-value=1.1 Score=42.31 Aligned_cols=137 Identities=20% Similarity=0.258 Sum_probs=85.0
Q ss_pred HHHHHHHhhcCCcEEEEeecCCCCHHHHHHHHhcCCcEEEEccCC-CcHHHHHHHHhCCCEEEEecC---CHHHHHHHH-
Q 020013 53 DLIRKTRSLTERPFGVGVVLAFPHNENIKAILSEKVAVLQVSWGE-YSEELVLEAHSAGVKVVPQVG---SFDEARKAV- 127 (332)
Q Consensus 53 ~~i~~~r~~~~~p~gvnl~~~~~~~~~~~~~~~~~~~~I~~~~g~-~~~~~i~~~~~~g~~v~~~v~---s~~~a~~a~- 127 (332)
+++.+.++.++.|+..-++- .+.++.+.+. +|+++++... ....+++.+-+.|.+|+.+-+ ++++...+.
T Consensus 147 ~~L~~~~~~~Gl~v~tev~d----~~~~~~l~~~-vd~lqIgAr~~~N~~LL~~va~~~kPViLk~G~~~ti~E~l~A~e 221 (335)
T PRK08673 147 KLLAEAREETGLPIVTEVMD----PRDVELVAEY-VDILQIGARNMQNFDLLKEVGKTNKPVLLKRGMSATIEEWLMAAE 221 (335)
T ss_pred HHHHHHHHHcCCcEEEeeCC----HHHHHHHHHh-CCeEEECcccccCHHHHHHHHcCCCcEEEeCCCCCCHHHHHHHHH
Confidence 35566666667777665543 5677878777 9999997432 334677777778999987643 677766543
Q ss_pred ---HcCC-CEEEEe-cC-CCCcccCCCCchhhhHHHHHHHhCCCCCcEEeecCcCCH------HHHHHHHHcCcceeeec
Q 020013 128 ---NAGV-DAIIVQ-GR-EAGGHVIGQDGLISLLPMVVDLIGDRDIPIIAAGGIVDA------RGYVAALSLGAQGICLG 195 (332)
Q Consensus 128 ---~~g~-D~ivv~-G~-eaGGh~~~~~~~~~ll~~i~~~~~~~~iPviaaGGI~~~------~~v~~al~~GA~gV~~G 195 (332)
..|- +.++++ |. ..-+.. .....+..++.+++.. +.|||..-.=+++ .-..+++++||||+++=
T Consensus 222 ~i~~~GN~~viL~erG~~tf~~~~-~~~ldl~ai~~lk~~~---~lPVi~d~sH~~G~~~~v~~~a~AAvA~GAdGliIE 297 (335)
T PRK08673 222 YILAEGNPNVILCERGIRTFETAT-RNTLDLSAVPVIKKLT---HLPVIVDPSHATGKRDLVEPLALAAVAAGADGLIVE 297 (335)
T ss_pred HHHHcCCCeEEEEECCCCCCCCcC-hhhhhHHHHHHHHHhc---CCCEEEeCCCCCccccchHHHHHHHHHhCCCEEEEE
Confidence 3565 455554 22 110110 1123466677777655 7899774322222 34567889999999985
Q ss_pred ccc
Q 020013 196 TRF 198 (332)
Q Consensus 196 T~f 198 (332)
..|
T Consensus 298 ~H~ 300 (335)
T PRK08673 298 VHP 300 (335)
T ss_pred ecC
Confidence 544
|
|
| >PRK13957 indole-3-glycerol-phosphate synthase; Provisional | Back alignment and domain information |
|---|
Probab=95.27 E-value=0.096 Score=47.27 Aligned_cols=71 Identities=27% Similarity=0.286 Sum_probs=56.3
Q ss_pred HHHHHHHHHcCCCEEEEe--cCCCCcccCCCCchhhhHHHHHHHhCCCCCcEEeecCcCCHHHHHHHHHcCcceeeeccc
Q 020013 120 FDEARKAVNAGVDAIIVQ--GREAGGHVIGQDGLISLLPMVVDLIGDRDIPIIAAGGIVDARGYVAALSLGAQGICLGTR 197 (332)
Q Consensus 120 ~~~a~~a~~~g~D~ivv~--G~eaGGh~~~~~~~~~ll~~i~~~~~~~~iPviaaGGI~~~~~v~~al~~GA~gV~~GT~ 197 (332)
.+.|+...+.|+++|-|- +.-.|| .+..+..+++.+ ++||+.-..|.++.++.++..+|||+|.+=.+
T Consensus 64 ~~~A~~y~~~GA~aISVlTe~~~F~G-------s~~~l~~v~~~v---~~PvL~KDFIid~~QI~ea~~~GADavLLI~~ 133 (247)
T PRK13957 64 VQIAKTYETLGASAISVLTDQSYFGG-------SLEDLKSVSSEL---KIPVLRKDFILDEIQIREARAFGASAILLIVR 133 (247)
T ss_pred HHHHHHHHHCCCcEEEEEcCCCcCCC-------CHHHHHHHHHhc---CCCEEeccccCCHHHHHHHHHcCCCEEEeEHh
Confidence 355677788999999762 222233 367788888877 79999999999999999999999999988777
Q ss_pred ccc
Q 020013 198 FVA 200 (332)
Q Consensus 198 fl~ 200 (332)
++.
T Consensus 134 ~L~ 136 (247)
T PRK13957 134 ILT 136 (247)
T ss_pred hCC
Confidence 664
|
|
| >COG0329 DapA Dihydrodipicolinate synthase/N-acetylneuraminate lyase [Amino acid transport and metabolism / Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Probab=95.24 E-value=0.22 Score=46.49 Aligned_cols=121 Identities=20% Similarity=0.253 Sum_probs=68.4
Q ss_pred HHHHHHHcCCCEEEEecCCCCcccCCCCchhhhHHHHHHHhCCCCCcEEe-ecCcCCHHHH---HHHHHcCcceeeeccc
Q 020013 122 EARKAVNAGVDAIIVQGREAGGHVIGQDGLISLLPMVVDLIGDRDIPIIA-AGGIVDARGY---VAALSLGAQGICLGTR 197 (332)
Q Consensus 122 ~a~~a~~~g~D~ivv~G~eaGGh~~~~~~~~~ll~~i~~~~~~~~iPvia-aGGI~~~~~v---~~al~~GA~gV~~GT~ 197 (332)
.++...+.|+|+|++-|+.+-+...+...-..++..+++...+ ++|||+ .|+.++.+.+ +.+-.+||||+++-+.
T Consensus 30 lv~~li~~Gv~gi~~~GttGE~~~Ls~eEr~~v~~~~v~~~~g-rvpviaG~g~~~t~eai~lak~a~~~Gad~il~v~P 108 (299)
T COG0329 30 LVEFLIAAGVDGLVVLGTTGESPTLTLEERKEVLEAVVEAVGG-RVPVIAGVGSNSTAEAIELAKHAEKLGADGILVVPP 108 (299)
T ss_pred HHHHHHHcCCCEEEECCCCccchhcCHHHHHHHHHHHHHHHCC-CCcEEEecCCCcHHHHHHHHHHHHhcCCCEEEEeCC
Confidence 3455678999999997764433321222235556667776643 689887 5555443333 2334589999999988
Q ss_pred cccCccCCCCHHHHHHHhcCCCceEEEEecccCCCCCCceeecChHHHhh
Q 020013 198 FVASEESYAHPEYKRKLVEMDKTEYTDVFGRARWPGAPHRVLQTPFFSNW 247 (332)
Q Consensus 198 fl~t~Es~~~~~~k~~~~~~~~t~~t~~~~~~~~~g~~~R~l~n~~~~~~ 247 (332)
+....--..-..|=+++.++.+.. ..+++. |++...-+.-.++.++
T Consensus 109 yY~k~~~~gl~~hf~~ia~a~~lP-vilYN~---P~~tg~~l~~e~i~~l 154 (299)
T COG0329 109 YYNKPSQEGLYAHFKAIAEAVDLP-VILYNI---PSRTGVDLSPETIARL 154 (299)
T ss_pred CCcCCChHHHHHHHHHHHHhcCCC-EEEEeC---ccccCCCCCHHHHHHH
Confidence 776654322233334444444554 234542 3444444444444443
|
|
| >PLN02429 triosephosphate isomerase | Back alignment and domain information |
|---|
Probab=95.24 E-value=0.28 Score=45.82 Aligned_cols=119 Identities=14% Similarity=0.170 Sum_probs=68.2
Q ss_pred HHHHHHhcCCcEEEEc-------cCCCcHHHHHH----HHhCCCEEEEecCCHH--------------HHHHHHHcCCC-
Q 020013 79 NIKAILSEKVAVLQVS-------WGEYSEELVLE----AHSAGVKVVPQVGSFD--------------EARKAVNAGVD- 132 (332)
Q Consensus 79 ~~~~~~~~~~~~I~~~-------~g~~~~~~i~~----~~~~g~~v~~~v~s~~--------------~a~~a~~~g~D- 132 (332)
..+.+.+.|++++.++ |++ ..+.+.+ +.+.|+.++..++... +++...+.-.|
T Consensus 139 Sa~mLkd~Gv~~ViiGHSERR~~f~E-td~~V~~Kv~~al~~GL~pIvCIGE~l~ere~g~t~~vi~~Ql~~~l~~v~~~ 217 (315)
T PLN02429 139 SVEQLKDLGCKWVILGHSERRHVIGE-KDEFIGKKAAYALSEGLGVIACIGEKLEEREAGKTFDVCFAQLKAFADAVPSW 217 (315)
T ss_pred CHHHHHHcCCCEEEeCccccCCCCCc-CHHHHHHHHHHHHHCcCEEEEEcCCCHHHHhCCCHHHHHHHHHHHHHccCCcc
Confidence 3566778889988875 343 3455544 6778998888887432 22222322112
Q ss_pred --EEEE-ecCCCCc--ccCCCC---chhhhHHHHHH-HhC---CCCCcEEeecCcCCHHHHHHHHH-cCcceeeeccccc
Q 020013 133 --AIIV-QGREAGG--HVIGQD---GLISLLPMVVD-LIG---DRDIPIIAAGGIVDARGYVAALS-LGAQGICLGTRFV 199 (332)
Q Consensus 133 --~ivv-~G~eaGG--h~~~~~---~~~~ll~~i~~-~~~---~~~iPviaaGGI~~~~~v~~al~-~GA~gV~~GT~fl 199 (332)
.+|+ +...+=| ....+. .....+++... .+. ..+++|+..|+| +++++.+.+. .+.||+.+|++-+
T Consensus 218 ~~ivIAYEPvWAIGTGk~as~e~~~~v~~~IR~~l~~~~~~~va~~irILYGGSV-~~~N~~el~~~~diDG~LVGgASL 296 (315)
T PLN02429 218 DNIVVAYEPVWAIGTGKVASPQQAQEVHVAVRGWLKKNVSEEVASKTRIIYGGSV-NGGNSAELAKEEDIDGFLVGGASL 296 (315)
T ss_pred cceEEEECCHHHhCCCCCCCHHHHHHHHHHHHHHHHHHhhhhhccCceEEEcCcc-CHHHHHHHhcCCCCCEEEeeccee
Confidence 3443 3322322 211111 11222332111 110 126899999999 7899888774 7999999999987
|
|
| >TIGR03569 NeuB_NnaB N-acetylneuraminate synthase | Back alignment and domain information |
|---|
Probab=95.21 E-value=1.4 Score=41.54 Aligned_cols=120 Identities=18% Similarity=0.227 Sum_probs=76.3
Q ss_pred EEEEeecCCCCHHHHHHHHhcCCcEEEEccCC-CcHHHHHHHHhCCCEEEEecC--CHHHHHHHH----HcCCC---EEE
Q 020013 66 FGVGVVLAFPHNENIKAILSEKVAVLQVSWGE-YSEELVLEAHSAGVKVVPQVG--SFDEARKAV----NAGVD---AII 135 (332)
Q Consensus 66 ~gvnl~~~~~~~~~~~~~~~~~~~~I~~~~g~-~~~~~i~~~~~~g~~v~~~v~--s~~~a~~a~----~~g~D---~iv 135 (332)
+|+-++...-+.+.++.+.+.+++++.++.++ ....+++.+.+.|.+|+...+ +.+|...+. +.|.+ .++
T Consensus 88 ~Gi~~~stpfd~~svd~l~~~~v~~~KIaS~~~~n~pLL~~~A~~gkPvilStGmatl~Ei~~Av~~i~~~G~~~~~i~l 167 (329)
T TIGR03569 88 KGIEFLSTPFDLESADFLEDLGVPRFKIPSGEITNAPLLKKIARFGKPVILSTGMATLEEIEAAVGVLRDAGTPDSNITL 167 (329)
T ss_pred hCCcEEEEeCCHHHHHHHHhcCCCEEEECcccccCHHHHHHHHhcCCcEEEECCCCCHHHHHHHHHHHHHcCCCcCcEEE
Confidence 45555544445778888889999999986443 234688888888999987654 777666543 45764 777
Q ss_pred EecCCCCcccC-CCCchhhhHHHHHHHhCCCCCcEEeecCcCCHHHHHHHHHcCcc
Q 020013 136 VQGREAGGHVI-GQDGLISLLPMVVDLIGDRDIPIIAAGGIVDARGYVAALSLGAQ 190 (332)
Q Consensus 136 v~G~eaGGh~~-~~~~~~~ll~~i~~~~~~~~iPviaaGGI~~~~~v~~al~~GA~ 190 (332)
++... +... .....+..++.+++.. ++||..++=-..-.-..++.++||+
T Consensus 168 lhC~s--~YP~~~~~~nL~~I~~Lk~~f---~~pVG~SdHt~G~~~~~aAvalGA~ 218 (329)
T TIGR03569 168 LHCTT--EYPAPFEDVNLNAMDTLKEAF---DLPVGYSDHTLGIEAPIAAVALGAT 218 (329)
T ss_pred EEECC--CCCCCcccCCHHHHHHHHHHh---CCCEEECCCCccHHHHHHHHHcCCC
Confidence 65431 1110 0123366677777776 6899876543222333567789999
|
This family is a subset of the Pfam model pfam03102 and is believed to include only authentic NeuB N-acetylneuraminate (sialic acid) synthase enzymes. The majority of the genes identified by this model are observed adjacent to both the NeuA and NeuC genes which together effect the biosynthesis of CMP-N-acetylneuraminate from UDP-N-acetylglucosamine. |
| >PLN02424 ketopantoate hydroxymethyltransferase | Back alignment and domain information |
|---|
Probab=95.19 E-value=0.6 Score=43.80 Aligned_cols=144 Identities=16% Similarity=0.186 Sum_probs=88.5
Q ss_pred cceecCCCCCCCCcHHHHHHHHhCCCceeecCC--------CC-----CCHHHHHHHHHHHHhhcCCcEEE-EeecC-C-
Q 020013 11 YGIVQAPLGPDISGPELVAAVANAGGLGLLRAP--------DW-----EAPDYLRDLIRKTRSLTERPFGV-GVVLA-F- 74 (332)
Q Consensus 11 ~Pii~apM~~g~s~~~la~avs~aGglG~i~~~--------~~-----~~~e~~~~~i~~~r~~~~~p~gv-nl~~~-~- 74 (332)
-||+ |. ..-+...+..+.++|. .+|..+ +| .+.|++....+.++.-.+.|+-| .+-.. .
T Consensus 35 ~kiv---ml-TAyD~~sA~i~d~aGv-D~ILVGDSlgmv~lG~~~T~~Vtld~mi~H~~aV~Rga~~a~vVaDmPfgSY~ 109 (332)
T PLN02424 35 EPIT---MV-TAYDYPSAVHVDSAGI-DVCLVGDSAAMVVHGHDTTLPITLDEMLVHCRAVARGANRPLLVGDLPFGSYE 109 (332)
T ss_pred CcEE---EE-ecCCHHHHHHHHHcCC-CEEEECCcHHHHhcCCCCCCCcCHHHHHHHHHHHhccCCCCEEEeCCCCCCCC
Confidence 4665 32 3557778888877763 222111 12 34566666666666656677766 43221 1
Q ss_pred -CCHH----HHHHHHhcCCcEEEEccC-CCcHHHHHHHHhCCCEEEEecC-----------------CH-------HHHH
Q 020013 75 -PHNE----NIKAILSEKVAVLQVSWG-EYSEELVLEAHSAGVKVVPQVG-----------------SF-------DEAR 124 (332)
Q Consensus 75 -~~~~----~~~~~~~~~~~~I~~~~g-~~~~~~i~~~~~~g~~v~~~v~-----------------s~-------~~a~ 124 (332)
..++ ..+.+.+.|++.|-+-.| ....+.++.+.+.||+|+..++ +. ++|+
T Consensus 110 ~s~e~av~nA~rl~~eaGa~aVKlEGg~~~~~~~I~~l~~~GIPV~gHiGLtPQs~~~lGGykvqGr~~~~a~~li~dA~ 189 (332)
T PLN02424 110 SSTDQAVESAVRMLKEGGMDAVKLEGGSPSRVTAAKAIVEAGIAVMGHVGLTPQAISVLGGFRPQGRTAESAVKVVETAL 189 (332)
T ss_pred CCHHHHHHHHHHHHHHhCCcEEEECCCcHHHHHHHHHHHHcCCCEEEeecccceeehhhcCccccCCCHHHHHHHHHHHH
Confidence 1122 223445789999999745 2344678888899999983321 22 3556
Q ss_pred HHHHcCCCEEEEecCCCCcccCCCCchhhhHHHHHHHhCCCCCcEEeec
Q 020013 125 KAVNAGVDAIIVQGREAGGHVIGQDGLISLLPMVVDLIGDRDIPIIAAG 173 (332)
Q Consensus 125 ~a~~~g~D~ivv~G~eaGGh~~~~~~~~~ll~~i~~~~~~~~iPviaaG 173 (332)
..+++||+.|++++. + -.+..+|.+.+ ++|+|..|
T Consensus 190 ale~AGAf~ivLE~V----------p-~~la~~It~~l---~IPtIGIG 224 (332)
T PLN02424 190 ALQEAGCFAVVLECV----------P-APVAAAITSAL---QIPTIGIG 224 (332)
T ss_pred HHHHcCCcEEEEcCC----------c-HHHHHHHHHhC---CCCEEeec
Confidence 677899999999653 1 23677888877 79998654
|
|
| >PRK12331 oxaloacetate decarboxylase; Provisional | Back alignment and domain information |
|---|
Probab=95.15 E-value=1.7 Score=42.88 Aligned_cols=112 Identities=16% Similarity=0.242 Sum_probs=75.5
Q ss_pred HHHHHHHHhcCCcEEEEccCCC----cHHHHHHHHhCCCEEEEec----C---C----HHHHHHHHHcCCCEEEEecCCC
Q 020013 77 NENIKAILSEKVAVLQVSWGEY----SEELVLEAHSAGVKVVPQV----G---S----FDEARKAVNAGVDAIIVQGREA 141 (332)
Q Consensus 77 ~~~~~~~~~~~~~~I~~~~g~~----~~~~i~~~~~~g~~v~~~v----~---s----~~~a~~a~~~g~D~ivv~G~ea 141 (332)
...++.+.+.|++.|.+..... ..+.++.+++.|..+-..+ + + .+.++.+.+.|+|.|.+.-.
T Consensus 99 ~~~v~~A~~~Gvd~irif~~lnd~~n~~~~v~~ak~~G~~v~~~i~~t~~p~~~~~~~~~~a~~l~~~Gad~I~i~Dt-- 176 (448)
T PRK12331 99 ESFVQKSVENGIDIIRIFDALNDVRNLETAVKATKKAGGHAQVAISYTTSPVHTIDYFVKLAKEMQEMGADSICIKDM-- 176 (448)
T ss_pred HHHHHHHHHCCCCEEEEEEecCcHHHHHHHHHHHHHcCCeEEEEEEeecCCCCCHHHHHHHHHHHHHcCCCEEEEcCC--
Confidence 3557888999999987653221 2245677788887654221 1 2 34567788999999988433
Q ss_pred CcccCCCCchhhhHHHHHHHhCCCCCcEEe----ecCcCCHHHHHHHHHcCcceeeec
Q 020013 142 GGHVIGQDGLISLLPMVVDLIGDRDIPIIA----AGGIVDARGYVAALSLGAQGICLG 195 (332)
Q Consensus 142 GGh~~~~~~~~~ll~~i~~~~~~~~iPvia----aGGI~~~~~v~~al~~GA~gV~~G 195 (332)
.|.. .+.....++..+++.+ ++||-. .-|.+ ..+..+|+.+||+.|-..
T Consensus 177 ~G~l-~P~~v~~lv~alk~~~---~~pi~~H~Hnt~GlA-~AN~laAieaGad~vD~s 229 (448)
T PRK12331 177 AGIL-TPYVAYELVKRIKEAV---TVPLEVHTHATSGIA-EMTYLKAIEAGADIIDTA 229 (448)
T ss_pred CCCC-CHHHHHHHHHHHHHhc---CCeEEEEecCCCCcH-HHHHHHHHHcCCCEEEee
Confidence 4443 3445577888888776 578766 45773 577788889999987653
|
|
| >PRK11572 copper homeostasis protein CutC; Provisional | Back alignment and domain information |
|---|
Probab=95.10 E-value=0.12 Score=46.47 Aligned_cols=96 Identities=21% Similarity=0.254 Sum_probs=66.3
Q ss_pred EecCCHHHHHHHHHcCCCEEE-EecCCCCcccCCCCchhhhHHHHHHHhCCCCCcEEee-----cCc-CCH-------HH
Q 020013 115 PQVGSFDEARKAVNAGVDAII-VQGREAGGHVIGQDGLISLLPMVVDLIGDRDIPIIAA-----GGI-VDA-------RG 180 (332)
Q Consensus 115 ~~v~s~~~a~~a~~~g~D~iv-v~G~eaGGh~~~~~~~~~ll~~i~~~~~~~~iPviaa-----GGI-~~~-------~~ 180 (332)
..+.|++++..|.+.|+|-|= +.+...||.+ ++..++..+++.+ ++||.+- |+. .+. ++
T Consensus 6 vcv~s~~~a~~A~~~GAdRiELc~~L~~GGlT----PS~g~i~~~~~~~---~ipv~vMIRPR~gdF~Ys~~E~~~M~~d 78 (248)
T PRK11572 6 ICCYSMECALTAQQAGADRIELCAAPKEGGLT----PSLGVLKSVRERV---TIPVHPIIRPRGGDFCYSDGEFAAMLED 78 (248)
T ss_pred EEECCHHHHHHHHHcCCCEEEEccCcCCCCcC----CCHHHHHHHHHhc---CCCeEEEEecCCCCCCCCHHHHHHHHHH
Confidence 457799999999999999995 4666667765 5577788888776 6887642 332 222 34
Q ss_pred HHHHHHcCcceeeeccccccCccCCCCHHHHHHHhc-CCCc
Q 020013 181 YVAALSLGAQGICLGTRFVASEESYAHPEYKRKLVE-MDKT 220 (332)
Q Consensus 181 v~~al~~GA~gV~~GT~fl~t~Es~~~~~~k~~~~~-~~~t 220 (332)
+..+..+|+|||++|-- +++-.+....-+.+++ +.+.
T Consensus 79 i~~~~~~GadGvV~G~L---~~dg~vD~~~~~~Li~~a~~~ 116 (248)
T PRK11572 79 IATVRELGFPGLVTGVL---DVDGHVDMPRMRKIMAAAGPL 116 (248)
T ss_pred HHHHHHcCCCEEEEeeE---CCCCCcCHHHHHHHHHHhcCC
Confidence 66667799999999943 5666676666555555 4443
|
|
| >TIGR00736 nifR3_rel_arch TIM-barrel protein, putative | Back alignment and domain information |
|---|
Probab=95.05 E-value=0.54 Score=42.11 Aligned_cols=90 Identities=12% Similarity=0.180 Sum_probs=67.2
Q ss_pred CCHHHHHHHHHHHHhhcCCcEEEEeecCCCC---HHHHHHHHhcCCcEEEEccCCC-----cHHHHHHHHhC--CCEEEE
Q 020013 46 EAPDYLRDLIRKTRSLTERPFGVGVVLAFPH---NENIKAILSEKVAVLQVSWGEY-----SEELVLEAHSA--GVKVVP 115 (332)
Q Consensus 46 ~~~e~~~~~i~~~r~~~~~p~gvnl~~~~~~---~~~~~~~~~~~~~~I~~~~g~~-----~~~~i~~~~~~--g~~v~~ 115 (332)
.+|+.+.+.++.+++ .+.|+.|.+-...+. .+..+.+.+.|++.|+++...+ .-+.++.+++. .++|+.
T Consensus 118 ~dp~~l~~iv~av~~-~~~PVsvKiR~~~~~~~~~~~a~~l~~aGad~i~Vd~~~~g~~~a~~~~I~~i~~~~~~ipIIg 196 (231)
T TIGR00736 118 KNKELLKEFLTKMKE-LNKPIFVKIRGNCIPLDELIDALNLVDDGFDGIHVDAMYPGKPYADMDLLKILSEEFNDKIIIG 196 (231)
T ss_pred CCHHHHHHHHHHHHc-CCCcEEEEeCCCCCcchHHHHHHHHHHcCCCEEEEeeCCCCCchhhHHHHHHHHHhcCCCcEEE
Confidence 478889999999985 378888877654322 2456677889999999874321 13567777765 488885
Q ss_pred --ecCCHHHHHHHHHcCCCEEEE
Q 020013 116 --QVGSFDEARKAVNAGVDAIIV 136 (332)
Q Consensus 116 --~v~s~~~a~~a~~~g~D~ivv 136 (332)
.+.|.+++++.++.|||+|-+
T Consensus 197 NGgI~s~eda~e~l~~GAd~Vmv 219 (231)
T TIGR00736 197 NNSIDDIESAKEMLKAGADFVSV 219 (231)
T ss_pred ECCcCCHHHHHHHHHhCCCeEEE
Confidence 488999999999999999987
|
Members of this family show a distant relationship by PSI-BLAST to alpha/beta (TIM) barrel enzymes such as dihydroorotate dehydrogenase and glycolate oxidase. At least two closely related but well-separable families among the bacteria, the nifR3/yhdG family and the yjbN family, share a more distant relationship to this family of shorter, exclusively archaeal proteins. |
| >COG1954 GlpP Glycerol-3-phosphate responsive antiterminator (mRNA-binding) [Transcription] | Back alignment and domain information |
|---|
Probab=95.02 E-value=0.4 Score=40.44 Aligned_cols=129 Identities=18% Similarity=0.236 Sum_probs=79.6
Q ss_pred CHHHHHHHHHHHHhhcCCcEEEEe--ecC-CCCHHHHHHHHh-cCCcEEEEccCCCcHHHHHHHHhCCCEEEEec---C-
Q 020013 47 APDYLRDLIRKTRSLTERPFGVGV--VLA-FPHNENIKAILS-EKVAVLQVSWGEYSEELVLEAHSAGVKVVPQV---G- 118 (332)
Q Consensus 47 ~~e~~~~~i~~~r~~~~~p~gvnl--~~~-~~~~~~~~~~~~-~~~~~I~~~~g~~~~~~i~~~~~~g~~v~~~v---~- 118 (332)
+.-.+++.++.+++... -.-+++ +-- ..++..++-+.+ .++|.|... -...+...++.|+..+--+ .
T Consensus 33 ~i~~ik~ivk~lK~~gK-~vfiHvDLv~Gl~~~e~~i~fi~~~~~pdGIIST----k~~~i~~Akk~~~~aIqR~FilDS 107 (181)
T COG1954 33 HILNIKEIVKKLKNRGK-TVFIHVDLVEGLSNDEVAIEFIKEVIKPDGIIST----KSNVIKKAKKLGILAIQRLFILDS 107 (181)
T ss_pred hhhhHHHHHHHHHhCCc-EEEEEeHHhcccCCchHHHHHHHHhccCCeeEEc----cHHHHHHHHHcCCceeeeeeeecH
Confidence 34456677777765422 122221 110 122344444443 569988765 2457888888888766322 2
Q ss_pred -CHHHH-HHHHHcCCCEEEEecCCCCcccCCCCchhhhHHHHHHHhCCCCCcEEeecCcCCHHHHHHHHHcCcceee
Q 020013 119 -SFDEA-RKAVNAGVDAIIVQGREAGGHVIGQDGLISLLPMVVDLIGDRDIPIIAAGGIVDARGYVAALSLGAQGIC 193 (332)
Q Consensus 119 -s~~~a-~~a~~~g~D~ivv~G~eaGGh~~~~~~~~~ll~~i~~~~~~~~iPviaaGGI~~~~~v~~al~~GA~gV~ 193 (332)
+.+-+ ....+..+|+|=+- .| -....++++.+.. ++|||+.|=|.+-+++.+++.+||-+|-
T Consensus 108 ~Al~~~~~~i~~~~pD~iEvL--------PG--v~Pkvi~~i~~~t---~~piIAGGLi~t~Eev~~Al~aGA~avS 171 (181)
T COG1954 108 IALEKGIKQIEKSEPDFIEVL--------PG--VMPKVIKEITEKT---HIPIIAGGLIETEEEVREALKAGAVAVS 171 (181)
T ss_pred HHHHHHHHHHHHcCCCEEEEc--------Cc--ccHHHHHHHHHhc---CCCEEeccccccHHHHHHHHHhCcEEEe
Confidence 33333 33556899999661 11 1234556666655 7999999999999999999999998776
|
|
| >PRK12656 fructose-6-phosphate aldolase; Reviewed | Back alignment and domain information |
|---|
Probab=95.02 E-value=1.2 Score=39.62 Aligned_cols=137 Identities=19% Similarity=0.162 Sum_probs=82.5
Q ss_pred HHHHHHHhhc--CCcEEEEeecCCCCHHHHHHHH----hcCCcEEE-EccCCCcHHHHHHHHhCCCEEEEe-cCCHHHHH
Q 020013 53 DLIRKTRSLT--ERPFGVGVVLAFPHNENIKAIL----SEKVAVLQ-VSWGEYSEELVLEAHSAGVKVVPQ-VGSFDEAR 124 (332)
Q Consensus 53 ~~i~~~r~~~--~~p~gvnl~~~~~~~~~~~~~~----~~~~~~I~-~~~g~~~~~~i~~~~~~g~~v~~~-v~s~~~a~ 124 (332)
+.++++++.. +.|+-+.++.... ++.++.+. ..+..++. +..-..--+.++.+++.|+++-.+ +-|++++.
T Consensus 42 ~~~~~i~~~i~~~~~vs~ev~~~~~-~~mi~eA~~l~~~~~~nv~VKIP~T~~Gl~Ai~~L~~~Gi~vn~T~ifs~~Qa~ 120 (222)
T PRK12656 42 ERIREVREIIGDEASIHVQVVAQDY-EGILKDAHEIRRQCGDDVYIKVPVTPAGLAAIKTLKAEGYHITATAIYTVFQGL 120 (222)
T ss_pred HHHHHHHHHhCCCCcEEEEEEECCH-HHHHHHHHHHHHHhCCCEEEEeCCCHHHHHHHHHHHHCCCceEEeeeCCHHHHH
Confidence 3445555543 3577777765432 33333322 23444433 442111235678888899998755 67999999
Q ss_pred HHHHcCCCEEEE-ecC-CCCcccCCCCchhhhHHHHHHHhCCC-CCcEEeecCcCCHHHHHHHHHcCcceeeec
Q 020013 125 KAVNAGVDAIIV-QGR-EAGGHVIGQDGLISLLPMVVDLIGDR-DIPIIAAGGIVDARGYVAALSLGAQGICLG 195 (332)
Q Consensus 125 ~a~~~g~D~ivv-~G~-eaGGh~~~~~~~~~ll~~i~~~~~~~-~iPviaaGGI~~~~~v~~al~~GA~gV~~G 195 (332)
.+.++|+++|-. -|+ +.-|+ ....++.++.+.+... .-.-|.+--+.+.+++.+++.+||+.+-+.
T Consensus 121 ~Aa~aGa~yvsPyvgRi~d~g~-----D~~~~i~~i~~~~~~~~~~tkILaAS~r~~~~v~~a~~~G~d~vTvp 189 (222)
T PRK12656 121 LAIEAGADYLAPYYNRMENLNI-----DSNAVIGQLAEAIDRENSDSKILAASFKNVAQVNKAFALGAQAVTAG 189 (222)
T ss_pred HHHHCCCCEEecccchhhhcCC-----CHHHHHHHHHHHHHhcCCCCEEEEEecCCHHHHHHHHHcCCCEEecC
Confidence 999999999864 233 11111 1234555555544211 124555666889999999999999998863
|
|
| >cd00408 DHDPS-like Dihydrodipicolinate synthase family | Back alignment and domain information |
|---|
Probab=95.01 E-value=0.29 Score=44.92 Aligned_cols=123 Identities=16% Similarity=0.254 Sum_probs=69.8
Q ss_pred HHHHHHHcCCCEEEEecCCCCcccCCCCchhhhHHHHHHHhCCCCCcEEeecCcCCHHHHH----HHHHcCcceeeeccc
Q 020013 122 EARKAVNAGVDAIIVQGREAGGHVIGQDGLISLLPMVVDLIGDRDIPIIAAGGIVDARGYV----AALSLGAQGICLGTR 197 (332)
Q Consensus 122 ~a~~a~~~g~D~ivv~G~eaGGh~~~~~~~~~ll~~i~~~~~~~~iPviaaGGI~~~~~v~----~al~~GA~gV~~GT~ 197 (332)
.++...+.|+|+|++-|..+.++......-..++..+++.... ++||++.-|=.+.++.. .+-.+|||++++...
T Consensus 23 ~i~~l~~~Gv~gi~~~GstGE~~~ls~~Er~~l~~~~~~~~~~-~~~vi~gv~~~~~~~~i~~a~~a~~~Gad~v~v~pP 101 (281)
T cd00408 23 LVEFLIEAGVDGLVVLGTTGEAPTLTDEERKEVIEAVVEAVAG-RVPVIAGVGANSTREAIELARHAEEAGADGVLVVPP 101 (281)
T ss_pred HHHHHHHcCCCEEEECCCCcccccCCHHHHHHHHHHHHHHhCC-CCeEEEecCCccHHHHHHHHHHHHHcCCCEEEECCC
Confidence 4455677899999997765555542222235566677776643 68987655544444433 334589999999988
Q ss_pred cccCccCCCCHHHHHHHhcCCCceEEEEecccCCCCCCceeecChHHHhhhc
Q 020013 198 FVASEESYAHPEYKRKLVEMDKTEYTDVFGRARWPGAPHRVLQTPFFSNWKN 249 (332)
Q Consensus 198 fl~t~Es~~~~~~k~~~~~~~~t~~t~~~~~~~~~g~~~R~l~n~~~~~~~~ 249 (332)
+........--.|=+.+.++.+..+ .++. .|...+..+....+.++.+
T Consensus 102 ~y~~~~~~~~~~~~~~ia~~~~~pi-~iYn---~P~~tg~~l~~~~~~~L~~ 149 (281)
T cd00408 102 YYNKPSQEGIVAHFKAVADASDLPV-ILYN---IPGRTGVDLSPETIARLAE 149 (281)
T ss_pred cCCCCCHHHHHHHHHHHHhcCCCCE-EEEE---CccccCCCCCHHHHHHHhc
Confidence 7766211111222233333433332 2443 2444455666666666543
|
A member of the class I aldolases, which use an active-site lysine which stablilzes a reaction intermediate via Schiff base formation, and have TIM beta/alpha barrel fold. The dihydrodipicolinate synthase family comprises several pyruvate-dependent class I aldolases that use the same catalytic step to catalyze different reactions in different pathways and includes such proteins as N-acetylneuraminate lyase, MosA protein, 5-keto-4-deoxy-glucarate dehydratase, trans-o-hydroxybenzylidenepyruvate hydratase-aldolase, trans-2'-carboxybenzalpyruvate hydratase-aldolase, and 2-keto-3-deoxy- gluconate aldolase. The family is also referred to as the N-acetylneuraminate lyase (NAL) family. |
| >PRK05567 inosine 5'-monophosphate dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=94.96 E-value=0.66 Score=46.32 Aligned_cols=120 Identities=20% Similarity=0.259 Sum_probs=77.7
Q ss_pred ecCCCCCCCCcHHHHHHHHhCCCceeecCC-CCCCHHHHHHHHHHHHhhc-CCcEEEEeecCCCCHHHHHHHHhcCCcEE
Q 020013 14 VQAPLGPDISGPELVAAVANAGGLGLLRAP-DWEAPDYLRDLIRKTRSLT-ERPFGVGVVLAFPHNENIKAILSEKVAVL 91 (332)
Q Consensus 14 i~apM~~g~s~~~la~avs~aGglG~i~~~-~~~~~e~~~~~i~~~r~~~-~~p~gvnl~~~~~~~~~~~~~~~~~~~~I 91 (332)
+.+.|+....+.+.+.++.++|. .++..- .....+.+.+.++.+++.. +.|+.++-.. ..+....+.+.|+|+|
T Consensus 219 V~aai~~~~~~~e~a~~L~~agv-dvivvD~a~g~~~~vl~~i~~i~~~~p~~~vi~g~v~---t~e~a~~l~~aGad~i 294 (486)
T PRK05567 219 VGAAVGVGADNEERAEALVEAGV-DVLVVDTAHGHSEGVLDRVREIKAKYPDVQIIAGNVA---TAEAARALIEAGADAV 294 (486)
T ss_pred EEeecccCcchHHHHHHHHHhCC-CEEEEECCCCcchhHHHHHHHHHhhCCCCCEEEeccC---CHHHHHHHHHcCCCEE
Confidence 45666532345678888888774 333221 0122345667788887764 6777664333 2566778889999999
Q ss_pred EEccC--------------CCcHHHH----HHHHhCCCEEEE--ecCCHHHHHHHHHcCCCEEEEe
Q 020013 92 QVSWG--------------EYSEELV----LEAHSAGVKVVP--QVGSFDEARKAVNAGVDAIIVQ 137 (332)
Q Consensus 92 ~~~~g--------------~~~~~~i----~~~~~~g~~v~~--~v~s~~~a~~a~~~g~D~ivv~ 137 (332)
.++.| .+....+ +.+++.++++++ .+.+..++.+|+..|+|++.+-
T Consensus 295 ~vg~g~gs~~~~r~~~~~g~p~~~~~~~~~~~~~~~~~~viadGGi~~~~di~kAla~GA~~v~~G 360 (486)
T PRK05567 295 KVGIGPGSICTTRIVAGVGVPQITAIADAAEAAKKYGIPVIADGGIRYSGDIAKALAAGASAVMLG 360 (486)
T ss_pred EECCCCCccccceeecCCCcCHHHHHHHHHHHhccCCCeEEEcCCCCCHHHHHHHHHhCCCEEEEC
Confidence 76422 2212222 233346899998 6889999999999999999983
|
|
| >TIGR02313 HpaI-NOT-DapA 2,4-dihydroxyhept-2-ene-1,7-dioic acid aldolase | Back alignment and domain information |
|---|
Probab=94.78 E-value=0.24 Score=46.03 Aligned_cols=122 Identities=13% Similarity=0.148 Sum_probs=69.1
Q ss_pred HHHHHHHcCCCEEEEecCCCCcccCCCCchhhhHHHHHHHhCCCCCcEEeecCcCCHHHH----HHHHHcCcceeeeccc
Q 020013 122 EARKAVNAGVDAIIVQGREAGGHVIGQDGLISLLPMVVDLIGDRDIPIIAAGGIVDARGY----VAALSLGAQGICLGTR 197 (332)
Q Consensus 122 ~a~~a~~~g~D~ivv~G~eaGGh~~~~~~~~~ll~~i~~~~~~~~iPviaaGGI~~~~~v----~~al~~GA~gV~~GT~ 197 (332)
.++...+.|+|+|++-|..+-++......-..++..+++...+ ++||++.=|-.+-++. ..+-++|||++++...
T Consensus 26 lv~~~~~~Gv~gi~v~GstGE~~~Ls~~Er~~l~~~~~~~~~g-~~pvi~gv~~~~t~~ai~~a~~A~~~Gad~v~v~pP 104 (294)
T TIGR02313 26 LIEFQIEGGSHAISVGGTSGEPGSLTLEERKQAIENAIDQIAG-RIPFAPGTGALNHDETLELTKFAEEAGADAAMVIVP 104 (294)
T ss_pred HHHHHHHcCCCEEEECccCcccccCCHHHHHHHHHHHHHHhCC-CCcEEEECCcchHHHHHHHHHHHHHcCCCEEEEcCc
Confidence 3455678899999997765444432222235566666666643 6999866554455554 3445689999999999
Q ss_pred cccCccCCCCHHHHHHHhcCC-CceEEEEecccCCCCCCceeecChHHHhhh
Q 020013 198 FVASEESYAHPEYKRKLVEMD-KTEYTDVFGRARWPGAPHRVLQTPFFSNWK 248 (332)
Q Consensus 198 fl~t~Es~~~~~~k~~~~~~~-~t~~t~~~~~~~~~g~~~R~l~n~~~~~~~ 248 (332)
+........--.|=+.|.++. +.. ..+++ .|+..+.-+.-..+.++.
T Consensus 105 ~y~~~~~~~l~~~f~~ia~a~~~lp-v~iYn---~P~~tg~~l~~~~l~~L~ 152 (294)
T TIGR02313 105 YYNKPNQEALYDHFAEVADAVPDFP-IIIYN---IPGRAAQEIAPKTMARLR 152 (294)
T ss_pred cCCCCCHHHHHHHHHHHHHhccCCC-EEEEe---CchhcCcCCCHHHHHHHH
Confidence 876642222223333344443 333 23443 234334445555555543
|
This model represents a subset of the DapA (dihydrodipicolinate synthase) family which has apparently evolved a separate function. The product of DapA, dihydrodipicolinate, results from the non-enzymatic cyclization and dehydration of 6-amino-2,4-dihydroxyhept-2-ene-1,7-dioic acid, which is different from the substrate of this reaction only in the presence of the amino group. In the absence of this amino group, and running the reaction in the opposite direction, the reaction corresponds to the HpaI aldolase component of the 4-hydroxyphenylacetic acid catabolism pathway (see TIGR02311). At present, this variant of DapA is found only in Oceanobacillus iheyensis HTE831 and Thermus thermophilus HB27. In both of these cases, one or more other DapA genes can be found and the one identified by this model is part of an operon for 4-hydroxyphenylacetic acid catabolism. |
| >cd02922 FCB2_FMN Flavocytochrome b2 (FCB2) FMN-binding domain | Back alignment and domain information |
|---|
Probab=94.77 E-value=0.66 Score=44.12 Aligned_cols=43 Identities=21% Similarity=0.294 Sum_probs=35.8
Q ss_pred chhhhHHHHHHHhCCCCCcEEeecCcCCHHHHHHHHHcCcceeeecc
Q 020013 150 GLISLLPMVVDLIGDRDIPIIAAGGIVDARGYVAALSLGAQGICLGT 196 (332)
Q Consensus 150 ~~~~ll~~i~~~~~~~~iPviaaGGI~~~~~v~~al~~GA~gV~~GT 196 (332)
.+|..+..+++.. ++|||+- ||.+.+++..+..+|+|+|++.-
T Consensus 200 ~~~~~i~~l~~~~---~~PvivK-gv~~~~dA~~a~~~G~d~I~vsn 242 (344)
T cd02922 200 LTWDDIKWLRKHT---KLPIVLK-GVQTVEDAVLAAEYGVDGIVLSN 242 (344)
T ss_pred CCHHHHHHHHHhc---CCcEEEE-cCCCHHHHHHHHHcCCCEEEEEC
Confidence 4577788887766 7899987 77899999999999999999853
|
FCB2 (AKA L-lactate:cytochrome c oxidoreductase) is a respiratory enzyme located in the intermembrane space of fungal mitochondria which catalyzes the oxidation of L-lactate to pyruvate. FCB2 also participates in a short electron-transport chain involving cytochrome c and cytochrome oxidase which ultimately directs the reducing equivalents gained from L-lactate oxidation to oxygen, yielding one molecule of ATP for every L-lactate molecule consumed. FCB2 is composed of 2 domains: a C-terminal flavin-binding domain, which includes the active site for lacate oxidation, and an N-terminal b2-cytochrome domain, required for efficient cytochrome c reduction. FCB2 is a homotetramer and contains two noncovalently bound cofactors, FMN and heme per subunit. |
| >TIGR00262 trpA tryptophan synthase, alpha subunit | Back alignment and domain information |
|---|
Probab=94.77 E-value=1.1 Score=40.82 Aligned_cols=120 Identities=21% Similarity=0.198 Sum_probs=75.8
Q ss_pred CccceecCCCCCCCCcH-------HHHHHHHhCCCceeecCCCCCCHHHHHHHHHHHHhhcCCcEEEEeecCCCCHHHHH
Q 020013 9 FEYGIVQAPLGPDISGP-------ELVAAVANAGGLGLLRAPDWEAPDYLRDLIRKTRSLTERPFGVGVVLAFPHNENIK 81 (332)
Q Consensus 9 ~~~Pii~apM~~g~s~~-------~la~avs~aGglG~i~~~~~~~~e~~~~~i~~~r~~~~~p~gvnl~~~~~~~~~~~ 81 (332)
.+.|++ -|. ..+| .++...+++|.-|++.. ..+.++..+.++.+++.. ... +-++.+....+.++
T Consensus 86 ~~~plv--~m~--Y~Npi~~~G~e~f~~~~~~aGvdgviip--Dlp~ee~~~~~~~~~~~g-l~~-i~lv~P~T~~eri~ 157 (256)
T TIGR00262 86 PNIPIG--LLT--YYNLIFRKGVEEFYAKCKEVGVDGVLVA--DLPLEESGDLVEAAKKHG-VKP-IFLVAPNADDERLK 157 (256)
T ss_pred CCCCEE--EEE--eccHHhhhhHHHHHHHHHHcCCCEEEEC--CCChHHHHHHHHHHHHCC-CcE-EEEECCCCCHHHHH
Confidence 356887 775 4555 78899999999998865 246677788888887642 111 22233333345665
Q ss_pred HHHhcCCcEEEE---c--cCC------CcHHHHHHHHhC-CCEEEE--ecCCHHHHHHHHHcCCCEEEE
Q 020013 82 AILSEKVAVLQV---S--WGE------YSEELVLEAHSA-GVKVVP--QVGSFDEARKAVNAGVDAIIV 136 (332)
Q Consensus 82 ~~~~~~~~~I~~---~--~g~------~~~~~i~~~~~~-g~~v~~--~v~s~~~a~~a~~~g~D~ivv 136 (332)
.+.+..-.+|.+ . -|. ...+.++++++. +.+++. .+++.++++.+.+.|+|++++
T Consensus 158 ~i~~~~~gfiy~vs~~G~TG~~~~~~~~~~~~i~~lr~~~~~pi~vgfGI~~~e~~~~~~~~GADgvVv 226 (256)
T TIGR00262 158 QIAEKSQGFVYLVSRAGVTGARNRAASALNELVKRLKAYSAKPVLVGFGISKPEQVKQAIDAGADGVIV 226 (256)
T ss_pred HHHHhCCCCEEEEECCCCCCCcccCChhHHHHHHHHHhhcCCCEEEeCCCCCHHHHHHHHHcCCCEEEE
Confidence 555543324432 1 121 123566677763 455554 467899999999999999998
|
Tryptophan synthase catalyzes the last step in the biosynthesis of tryptophan. The alpha chain is responsible for the aldol cleavage of indoleglycerol phosphate to indole and glyceraldehyde 3-phosphate. In bacteria and plants each domain is found on a separate subunit (alpha and beta chains), while in fungi the two domains are fused together on a single multifunctional protein. The signature pattern for trpA contains three conserved acidic residues. [LIVM]-E-[LIVM]-G-x(2)-[FYC]-[ST]-[DE]-[PA]-[LIVMY]-[AGLI]-[DE]-G and this is located between residues 43-58 of the model. The Sulfolobus solfataricus trpA is known to be quite divergent from other known trpA sequences. |
| >PLN02623 pyruvate kinase | Back alignment and domain information |
|---|
Probab=94.74 E-value=0.54 Score=47.49 Aligned_cols=116 Identities=21% Similarity=0.259 Sum_probs=71.8
Q ss_pred HHHHHHHhcCCcEEEEccCCCcHHHHHH----HHhC--CCEEEEecCCHHHHH---HHHHcCCCEEEEecCCCCcccCCC
Q 020013 78 ENIKAILSEKVAVLQVSWGEYSEELVLE----AHSA--GVKVVPQVGSFDEAR---KAVNAGVDAIIVQGREAGGHVIGQ 148 (332)
Q Consensus 78 ~~~~~~~~~~~~~I~~~~g~~~~~~i~~----~~~~--g~~v~~~v~s~~~a~---~a~~~g~D~ivv~G~eaGGh~~~~ 148 (332)
+.++..++.++|+|.++|=... +-++. ++.. .+.+++++-+.+-.. ...+ |+|+|.+--.+-|-+. +.
T Consensus 282 ~di~f~~~~~vD~ialSFVr~a-~DV~~~r~~l~~~~~~~~iiakIEt~eaVeNldeIl~-g~DgImIgrgDLgvel-g~ 358 (581)
T PLN02623 282 EDIKFGVENKVDFYAVSFVKDA-QVVHELKDYLKSCNADIHVIVKIESADSIPNLHSIIT-ASDGAMVARGDLGAEL-PI 358 (581)
T ss_pred HHHHHHHHcCCCEEEECCCCCH-HHHHHHHHHHHHcCCcceEEEEECCHHHHHhHHHHHH-hCCEEEECcchhhhhc-Cc
Confidence 4466778899999999975433 23333 3333 467889888765433 2333 9999998333333333 22
Q ss_pred CchhhhHHHHHHHhCCCCCcEEeec---------CcCC---HHHHHHHHHcCcceeeecc
Q 020013 149 DGLISLLPMVVDLIGDRDIPIIAAG---------GIVD---ARGYVAALSLGAQGICLGT 196 (332)
Q Consensus 149 ~~~~~ll~~i~~~~~~~~iPviaaG---------GI~~---~~~v~~al~~GA~gV~~GT 196 (332)
.....+..++.+.....++|++.+. ..-+ ..+++.++..|+|+|+++.
T Consensus 359 ~~v~~~qk~Ii~~~~~~gKpvivaTQMLESMi~~~~PTRAEv~Dva~av~dG~d~vmLs~ 418 (581)
T PLN02623 359 EEVPLLQEEIIRRCRSMGKPVIVATNMLESMIVHPTPTRAEVSDIAIAVREGADAVMLSG 418 (581)
T ss_pred HHHHHHHHHHHHHHHHhCCCEEEECchhhhcccCCCCCchhHHHHHHHHHcCCCEEEecc
Confidence 2223344444444333378998766 4421 2589999999999999984
|
|
| >PF13714 PEP_mutase: Phosphoenolpyruvate phosphomutase; PDB: 1ZLP_A 3EOO_C 1UJQ_D 1O5Q_A 2DUA_A 2HJP_A 2HRW_A 2QIW_A 3KZ2_B 3IH1_B | Back alignment and domain information |
|---|
Probab=94.67 E-value=2.1 Score=38.50 Aligned_cols=167 Identities=14% Similarity=0.186 Sum_probs=99.6
Q ss_pred CCCcHHHHHHHHhCCCceeec----------C--CCCCCHHHHHHHHHHHHhhcCCcEEEEeecCCCC-----HHHHHHH
Q 020013 21 DISGPELVAAVANAGGLGLLR----------A--PDWEAPDYLRDLIRKTRSLTERPFGVGVVLAFPH-----NENIKAI 83 (332)
Q Consensus 21 g~s~~~la~avs~aGglG~i~----------~--~~~~~~e~~~~~i~~~r~~~~~p~gvnl~~~~~~-----~~~~~~~ 83 (332)
++-++--+..+.++|.=.+.. . .+..+.+++.+.++++...++.|+-+.+=.-..+ .+.++.+
T Consensus 15 ~~~D~~SAr~~e~~Gf~ai~~sg~~~a~s~G~pD~~~lt~~e~~~~~~~I~~~~~iPv~vD~d~GyG~~~~~v~~tv~~~ 94 (238)
T PF13714_consen 15 NVWDALSARLAERAGFDAIATSGAGVAASLGYPDGGLLTLTEMLAAVRRIARAVSIPVIVDADTGYGNDPENVARTVREL 94 (238)
T ss_dssp EESSHHHHHHHHHTT-SEEEEHHHHHHHHTTS-SSS-S-HHHHHHHHHHHHHHSSSEEEEE-TTTSSSSHHHHHHHHHHH
T ss_pred CCcCHHHHHHHHHcCCCEEEechHHHHHHcCCCCCCCCCHHHHHHHHHHHHhhhcCcEEEEcccccCchhHHHHHHHHHH
Confidence 455666667666666211110 0 1245667777788888777888988865322222 4557778
Q ss_pred HhcCCcEEEEccC---------CCcHHHHHHHHh-------CCCEEEEecCC-------HHH----HHHHHHcCCCEEEE
Q 020013 84 LSEKVAVLQVSWG---------EYSEELVLEAHS-------AGVKVVPQVGS-------FDE----ARKAVNAGVDAIIV 136 (332)
Q Consensus 84 ~~~~~~~I~~~~g---------~~~~~~i~~~~~-------~g~~v~~~v~s-------~~~----a~~a~~~g~D~ivv 136 (332)
.+.|+..|++--. .++++.+++++. .+..|+.-..+ .++ ++...++|+|.|.+
T Consensus 95 ~~aG~agi~IEDq~~~~~~~~l~~~ee~~~kI~Aa~~a~~~~~~~I~ARTDa~~~~~~~~deaI~R~~aY~eAGAD~ifi 174 (238)
T PF13714_consen 95 ERAGAAGINIEDQRCGHGGKQLVSPEEMVAKIRAAVDARRDPDFVIIARTDAFLRAEEGLDEAIERAKAYAEAGADMIFI 174 (238)
T ss_dssp HHCT-SEEEEESBSTTTSTT-B--HHHHHHHHHHHHHHHSSTTSEEEEEECHHCHHHHHHHHHHHHHHHHHHTT-SEEEE
T ss_pred HHcCCcEEEeeccccCCCCCceeCHHHHHHHHHHHHHhccCCeEEEEEeccccccCCCCHHHHHHHHHHHHHcCCCEEEe
Confidence 8899999987411 034456665542 36666644332 233 33456899999999
Q ss_pred ecCCCCcccCCCCchhhhHHHHHHHhCCCCCcEEeecCcCCHHHHHHHHHcCcceeeeccccccC
Q 020013 137 QGREAGGHVIGQDGLISLLPMVVDLIGDRDIPIIAAGGIVDARGYVAALSLGAQGICLGTRFVAS 201 (332)
Q Consensus 137 ~G~eaGGh~~~~~~~~~ll~~i~~~~~~~~iPviaaGGI~~~~~v~~al~~GA~gV~~GT~fl~t 201 (332)
.|. .+..-+.++.+.+ +.|+...-+ ...-++.++-.+|..-|..|..++.+
T Consensus 175 ~~~----------~~~~~i~~~~~~~---~~Pl~v~~~-~~~~~~~eL~~lGv~~v~~~~~~~~a 225 (238)
T PF13714_consen 175 PGL----------QSEEEIERIVKAV---DGPLNVNPG-PGTLSAEELAELGVKRVSYGNSLLRA 225 (238)
T ss_dssp TTS----------SSHHHHHHHHHHH---SSEEEEETT-SSSS-HHHHHHTTESEEEETSHHHHH
T ss_pred CCC----------CCHHHHHHHHHhc---CCCEEEEcC-CCCCCHHHHHHCCCcEEEEcHHHHHH
Confidence 554 1123367777777 688766554 22366777888999999999877654
|
... |
| >PRK04147 N-acetylneuraminate lyase; Provisional | Back alignment and domain information |
|---|
Probab=94.66 E-value=0.31 Score=45.24 Aligned_cols=123 Identities=19% Similarity=0.233 Sum_probs=70.1
Q ss_pred HHHHHHH-cCCCEEEEecCCCCcccCCCCchhhhHHHHHHHhCCCCCcEEeecCcCCHHHHH----HHHHcCcceeeecc
Q 020013 122 EARKAVN-AGVDAIIVQGREAGGHVIGQDGLISLLPMVVDLIGDRDIPIIAAGGIVDARGYV----AALSLGAQGICLGT 196 (332)
Q Consensus 122 ~a~~a~~-~g~D~ivv~G~eaGGh~~~~~~~~~ll~~i~~~~~~~~iPviaaGGI~~~~~v~----~al~~GA~gV~~GT 196 (332)
..+...+ .|+|+|++-|..+-++......-..++..+++...+ ++|||+.=|-.+.+++. .+-++|||+|++-+
T Consensus 29 li~~l~~~~Gv~gi~v~GstGE~~~Ls~eEr~~~~~~~~~~~~~-~~~viagvg~~~t~~ai~~a~~a~~~Gad~v~v~~ 107 (293)
T PRK04147 29 LVRFNIEKQGIDGLYVGGSTGEAFLLSTEEKKQVLEIVAEEAKG-KVKLIAQVGSVNTAEAQELAKYATELGYDAISAVT 107 (293)
T ss_pred HHHHHHhcCCCCEEEECCCccccccCCHHHHHHHHHHHHHHhCC-CCCEEecCCCCCHHHHHHHHHHHHHcCCCEEEEeC
Confidence 3455677 899999997664444432222235566666766643 68988755543455543 44568999999999
Q ss_pred ccccCccCCCCHHHHHHHhcCCCceEEEEecccCCCCCCceeecChHHHhhhc
Q 020013 197 RFVASEESYAHPEYKRKLVEMDKTEYTDVFGRARWPGAPHRVLQTPFFSNWKN 249 (332)
Q Consensus 197 ~fl~t~Es~~~~~~k~~~~~~~~t~~t~~~~~~~~~g~~~R~l~n~~~~~~~~ 249 (332)
.+........--.|=+.+.++.+.. ..+++ .|...+..+...++.++.+
T Consensus 108 P~y~~~~~~~l~~~f~~va~a~~lP-v~iYn---~P~~tg~~l~~~~l~~L~~ 156 (293)
T PRK04147 108 PFYYPFSFEEICDYYREIIDSADNP-MIVYN---IPALTGVNLSLDQFNELFT 156 (293)
T ss_pred CcCCCCCHHHHHHHHHHHHHhCCCC-EEEEe---CchhhccCCCHHHHHHHhc
Confidence 8875532111122333344443333 23443 2444455666666666543
|
|
| >TIGR03586 PseI pseudaminic acid synthase | Back alignment and domain information |
|---|
Probab=94.61 E-value=2.4 Score=40.05 Aligned_cols=120 Identities=18% Similarity=0.268 Sum_probs=75.1
Q ss_pred EEEEeecCCCCHHHHHHHHhcCCcEEEEccCC-CcHHHHHHHHhCCCEEEEecC--CHHHHHHHH----HcCC-CEEEEe
Q 020013 66 FGVGVVLAFPHNENIKAILSEKVAVLQVSWGE-YSEELVLEAHSAGVKVVPQVG--SFDEARKAV----NAGV-DAIIVQ 137 (332)
Q Consensus 66 ~gvnl~~~~~~~~~~~~~~~~~~~~I~~~~g~-~~~~~i~~~~~~g~~v~~~v~--s~~~a~~a~----~~g~-D~ivv~ 137 (332)
.|+.++...-+.+.++.+.+.+++++.++.++ ....+++.+-+.|.+|+.+.+ +.+|...+. +.|. +.++.+
T Consensus 89 ~Gi~~~stpfd~~svd~l~~~~v~~~KI~S~~~~n~~LL~~va~~gkPvilstG~~t~~Ei~~Av~~i~~~g~~~i~Llh 168 (327)
T TIGR03586 89 LGLTIFSSPFDETAVDFLESLDVPAYKIASFEITDLPLIRYVAKTGKPIIMSTGIATLEEIQEAVEACREAGCKDLVLLK 168 (327)
T ss_pred hCCcEEEccCCHHHHHHHHHcCCCEEEECCccccCHHHHHHHHhcCCcEEEECCCCCHHHHHHHHHHHHHCCCCcEEEEe
Confidence 45555544445778888888999999987443 234678888888999987654 777666543 4677 677776
Q ss_pred cCCCCcccC-CCCchhhhHHHHHHHhCCCCCcEEeecCcCCHHHHHHHHHcCcc
Q 020013 138 GREAGGHVI-GQDGLISLLPMVVDLIGDRDIPIIAAGGIVDARGYVAALSLGAQ 190 (332)
Q Consensus 138 G~eaGGh~~-~~~~~~~ll~~i~~~~~~~~iPviaaGGI~~~~~v~~al~~GA~ 190 (332)
+.. +... .....+..++.+++.. ++||-.+.=-..-.-..++.++||+
T Consensus 169 C~s--~YP~~~~~~nL~~i~~lk~~f---~~pVG~SDHt~G~~~~~aAva~GA~ 217 (327)
T TIGR03586 169 CTS--SYPAPLEDANLRTIPDLAERF---NVPVGLSDHTLGILAPVAAVALGAC 217 (327)
T ss_pred cCC--CCCCCcccCCHHHHHHHHHHh---CCCEEeeCCCCchHHHHHHHHcCCC
Confidence 531 1210 1123366677777766 6899554422112333566789998
|
|
| >TIGR02319 CPEP_Pphonmut carboxyvinyl-carboxyphosphonate phosphorylmutase | Back alignment and domain information |
|---|
Probab=94.60 E-value=3.8 Score=38.05 Aligned_cols=182 Identities=15% Similarity=0.127 Sum_probs=106.4
Q ss_pred chhhcCCccceecCCCCCCCCcHHHHHHHHhCCCceee-----------cCC--CCCCHHHHHHHHHHHHhhcCCcEEEE
Q 020013 3 WRGMLGFEYGIVQAPLGPDISGPELVAAVANAGGLGLL-----------RAP--DWEAPDYLRDLIRKTRSLTERPFGVG 69 (332)
Q Consensus 3 ~~~~l~~~~Pii~apM~~g~s~~~la~avs~aGglG~i-----------~~~--~~~~~e~~~~~i~~~r~~~~~p~gvn 69 (332)
|.+++.-.-|++ + +++-++--|..+..+|.=.+. +.+ +..+.+++...++++...++.|+-+.
T Consensus 8 ~r~l~~~~~~l~---~-p~v~Da~SArl~e~aGf~ai~~sg~~~~as~lG~pD~g~l~~~e~~~~~~~I~~~~~lPv~aD 83 (294)
T TIGR02319 8 FRELMNAPEILV---V-PSAYDALSAKVIQQAGFPAVHMTGSGTSASMLGLPDLGFTSVSEQAINAKNIVLAVDVPVIMD 83 (294)
T ss_pred HHHHhcCCCcEE---e-ecCcCHHHHHHHHHcCCCEEEecHHHHHHHHcCCCCcCCCCHHHHHHHHHHHHhccCCCEEEE
Confidence 455665455665 2 256677777777777631111 111 13455666667777777778888775
Q ss_pred eecCCC----CHHHHHHHHhcCCcEEEEcc-------C-------CCcHHHHHHHHh-------CCCEEEEec-----CC
Q 020013 70 VVLAFP----HNENIKAILSEKVAVLQVSW-------G-------EYSEELVLEAHS-------AGVKVVPQV-----GS 119 (332)
Q Consensus 70 l~~~~~----~~~~~~~~~~~~~~~I~~~~-------g-------~~~~~~i~~~~~-------~g~~v~~~v-----~s 119 (332)
+=.-.. ....++.+.+.|+..|++-- | .+..+.+++++. .++.|+.-. ..
T Consensus 84 ~dtGyG~~~~v~r~V~~~~~aGaagi~IEDq~~pK~cg~~~~k~lv~~ee~~~kI~Aa~~A~~~~d~~I~ARTDa~~~~g 163 (294)
T TIGR02319 84 ADAGYGNAMSVWRATREFERVGIVGYHLEDQVNPKRCGHLEGKRLISTEEMTGKIEAAVEAREDEDFTIIARTDARESFG 163 (294)
T ss_pred CCCCCCCcHHHHHHHHHHHHcCCeEEEEECCCCccccCCCCCccccCHHHHHHHHHHHHHhccCCCeEEEEEecccccCC
Confidence 422111 12346778889999987721 1 122344555432 123333322 23
Q ss_pred HHHH----HHHHHcCCCEEEEecCCCCcccCCCCchhhhHHHHHHHhCCCCCcE---EeecCcCCHHHHHHHHHcCccee
Q 020013 120 FDEA----RKAVNAGVDAIIVQGREAGGHVIGQDGLISLLPMVVDLIGDRDIPI---IAAGGIVDARGYVAALSLGAQGI 192 (332)
Q Consensus 120 ~~~a----~~a~~~g~D~ivv~G~eaGGh~~~~~~~~~ll~~i~~~~~~~~iPv---iaaGGI~~~~~v~~al~~GA~gV 192 (332)
.+++ +...++|+|.|.+.|. .+..-+.++.+.+ +.|+ +..||-...-++.++-++|..-|
T Consensus 164 ~deaI~Ra~aY~eAGAD~ifi~~~----------~~~~ei~~~~~~~---~~P~~~nv~~~~~~p~~s~~eL~~lG~~~v 230 (294)
T TIGR02319 164 LDEAIRRSREYVAAGADCIFLEAM----------LDVEEMKRVRDEI---DAPLLANMVEGGKTPWLTTKELESIGYNLA 230 (294)
T ss_pred HHHHHHHHHHHHHhCCCEEEecCC----------CCHHHHHHHHHhc---CCCeeEEEEecCCCCCCCHHHHHHcCCcEE
Confidence 4443 4456899999999543 2244566777766 4565 55565423356778888999999
Q ss_pred eeccccccC
Q 020013 193 CLGTRFVAS 201 (332)
Q Consensus 193 ~~GT~fl~t 201 (332)
..|...+.+
T Consensus 231 ~~~~~~~~a 239 (294)
T TIGR02319 231 IYPLSGWMA 239 (294)
T ss_pred EEcHHHHHH
Confidence 999887665
|
This family consists of carboxyvinyl-carboxyphosphonate phosphorylmutase (CPEP phosphonomutase), an unusual enzyme involved in the biosynthesis of the antibiotic bialaphos. So far, it is known only in that pathway and only in Streptomyces hygroscopicus. Some related proteins annotated as being functionally equivalent are likely misannotated examples of methylisocitrate lyase, an enzyme of priopionate utilization. |
| >PRK07259 dihydroorotate dehydrogenase 1B; Reviewed | Back alignment and domain information |
|---|
Probab=94.58 E-value=1 Score=41.89 Aligned_cols=90 Identities=18% Similarity=0.244 Sum_probs=63.7
Q ss_pred CHHHHHHHHHHHHhhcCCcEEEEeecCCCC-HHHHHHHHhcCCcEEEEc---cCC-----------------C-------
Q 020013 47 APDYLRDLIRKTRSLTERPFGVGVVLAFPH-NENIKAILSEKVAVLQVS---WGE-----------------Y------- 98 (332)
Q Consensus 47 ~~e~~~~~i~~~r~~~~~p~gvnl~~~~~~-~~~~~~~~~~~~~~I~~~---~g~-----------------~------- 98 (332)
+++.+.+.++.+|+.++.|+.+.+-....+ .+.++.+.+.|+|.|.++ .+. .
T Consensus 141 ~~~~~~eiv~~vr~~~~~pv~vKl~~~~~~~~~~a~~l~~~G~d~i~~~nt~~g~~~~~~~~~~~~~~~~gg~sg~~~~p 220 (301)
T PRK07259 141 DPELAYEVVKAVKEVVKVPVIVKLTPNVTDIVEIAKAAEEAGADGLSLINTLKGMAIDIKTRKPILANVTGGLSGPAIKP 220 (301)
T ss_pred CHHHHHHHHHHHHHhcCCCEEEEcCCCchhHHHHHHHHHHcCCCEEEEEccccccccccccCceeecCCcCccCCcCccc
Confidence 578889999999988888998887543222 234566778899988652 010 0
Q ss_pred -cHHHHHHHHhC-CCEEEE--ecCCHHHHHHHHHcCCCEEEE
Q 020013 99 -SEELVLEAHSA-GVKVVP--QVGSFDEARKAVNAGVDAIIV 136 (332)
Q Consensus 99 -~~~~i~~~~~~-g~~v~~--~v~s~~~a~~a~~~g~D~ivv 136 (332)
..++++.+++. +++|+. .+.+.+++.+...+|+|.|-+
T Consensus 221 ~~l~~v~~i~~~~~ipvi~~GGI~~~~da~~~l~aGAd~V~i 262 (301)
T PRK07259 221 IALRMVYQVYQAVDIPIIGMGGISSAEDAIEFIMAGASAVQV 262 (301)
T ss_pred ccHHHHHHHHHhCCCCEEEECCCCCHHHHHHHHHcCCCceeE
Confidence 12456666553 677774 478999999999999999977
|
|
| >PLN02591 tryptophan synthase | Back alignment and domain information |
|---|
Probab=94.52 E-value=1.8 Score=39.26 Aligned_cols=122 Identities=21% Similarity=0.171 Sum_probs=79.5
Q ss_pred CccceecCCCCCCC-----CcHHHHHHHHhCCCceeecCCCCCCHHHHHHHHHHHHhhcCCcEEEEeecCCCCHHHHHHH
Q 020013 9 FEYGIVQAPLGPDI-----SGPELVAAVANAGGLGLLRAPDWEAPDYLRDLIRKTRSLTERPFGVGVVLAFPHNENIKAI 83 (332)
Q Consensus 9 ~~~Pii~apM~~g~-----s~~~la~avs~aGglG~i~~~~~~~~e~~~~~i~~~r~~~~~p~gvnl~~~~~~~~~~~~~ 83 (332)
.+.|++ =|+..- .-..+...++++|.-|+|-. . .++|+..+....+++. +. --+-++.+...++.++.+
T Consensus 77 ~~~p~i--lm~Y~N~i~~~G~~~F~~~~~~aGv~Gviip-D-LP~ee~~~~~~~~~~~-gl-~~I~lv~Ptt~~~ri~~i 150 (250)
T PLN02591 77 LSCPIV--LFTYYNPILKRGIDKFMATIKEAGVHGLVVP-D-LPLEETEALRAEAAKN-GI-ELVLLTTPTTPTERMKAI 150 (250)
T ss_pred CCCCEE--EEecccHHHHhHHHHHHHHHHHcCCCEEEeC-C-CCHHHHHHHHHHHHHc-CC-eEEEEeCCCCCHHHHHHH
Confidence 345766 465211 23568888999999999976 3 5778877777777653 11 123333344446677777
Q ss_pred HhcCCcEEEE-c-c---CC---Cc---HHHHHHHHhC-CCEEEE--ecCCHHHHHHHHHcCCCEEEE
Q 020013 84 LSEKVAVLQV-S-W---GE---YS---EELVLEAHSA-GVKVVP--QVGSFDEARKAVNAGVDAIIV 136 (332)
Q Consensus 84 ~~~~~~~I~~-~-~---g~---~~---~~~i~~~~~~-g~~v~~--~v~s~~~a~~a~~~g~D~ivv 136 (332)
.+....+|.+ + . |. .+ .+.++++++. +++++. .+++.++++.+.+.|+|++++
T Consensus 151 a~~~~gFIY~Vs~~GvTG~~~~~~~~~~~~i~~vk~~~~~Pv~vGFGI~~~e~v~~~~~~GADGvIV 217 (250)
T PLN02591 151 AEASEGFVYLVSSTGVTGARASVSGRVESLLQELKEVTDKPVAVGFGISKPEHAKQIAGWGADGVIV 217 (250)
T ss_pred HHhCCCcEEEeeCCCCcCCCcCCchhHHHHHHHHHhcCCCceEEeCCCCCHHHHHHHHhcCCCEEEE
Confidence 7776666654 1 1 11 12 3456777763 666664 467899999999999999998
|
|
| >TIGR02317 prpB methylisocitrate lyase | Back alignment and domain information |
|---|
Probab=94.51 E-value=3.9 Score=37.80 Aligned_cols=182 Identities=16% Similarity=0.181 Sum_probs=106.0
Q ss_pred chhhcCCccceecCCCCCCCCcHHHHHHHHhCCCcee----------ecCC--CCCCHHHHHHHHHHHHhhcCCcEEEEe
Q 020013 3 WRGMLGFEYGIVQAPLGPDISGPELVAAVANAGGLGL----------LRAP--DWEAPDYLRDLIRKTRSLTERPFGVGV 70 (332)
Q Consensus 3 ~~~~l~~~~Pii~apM~~g~s~~~la~avs~aGglG~----------i~~~--~~~~~e~~~~~i~~~r~~~~~p~gvnl 70 (332)
|.+++.-.-|++ .| ++-++--+..+..+|.=.+ ++.+ +..+.+++.+.++++...++.|+.+.+
T Consensus 5 lr~l~~~~~~l~-~p---~~~Da~SAri~e~aGf~Ai~~sg~~~a~~lG~pD~g~lt~~e~~~~~~~I~~~~~iPviaD~ 80 (285)
T TIGR02317 5 FRAALAKEDILQ-IP---GAINAMAALLAERAGFEAIYLSGAAVAASLGLPDLGITTLDEVAEDARRITRVTDLPLLVDA 80 (285)
T ss_pred HHHHHhCCCcEE-eC---CCCCHHHHHHHHHcCCCEEEEcHHHHHHhCCCCCCCCCCHHHHHHHHHHHHhccCCCEEEEC
Confidence 556666445555 33 4667777776767762111 1111 234666677777777777788887754
Q ss_pred ecCCCC----HHHHHHHHhcCCcEEEEcc-------C-------CCcHHHHHHHHh-----CCC--EEEEecC-----CH
Q 020013 71 VLAFPH----NENIKAILSEKVAVLQVSW-------G-------EYSEELVLEAHS-----AGV--KVVPQVG-----SF 120 (332)
Q Consensus 71 ~~~~~~----~~~~~~~~~~~~~~I~~~~-------g-------~~~~~~i~~~~~-----~g~--~v~~~v~-----s~ 120 (332)
=.-... ...++.+.+.|+..|++-- | .+..+.+++++. .+. .|+.-.. ..
T Consensus 81 d~GyG~~~~v~~tv~~~~~aG~agi~IEDq~~pK~cgh~~g~~lv~~ee~~~kI~Aa~~a~~~~d~~IiARTDa~~~~g~ 160 (285)
T TIGR02317 81 DTGFGEAFNVARTVREMEDAGAAAVHIEDQVLPKRCGHLPGKELVSREEMVDKIAAAVDAKRDEDFVIIARTDARAVEGL 160 (285)
T ss_pred CCCCCCHHHHHHHHHHHHHcCCeEEEEecCCCccccCCCCCccccCHHHHHHHHHHHHHhccCCCEEEEEEcCcccccCH
Confidence 221111 2346778889999987621 1 123345555542 132 3332221 24
Q ss_pred HHH----HHHHHcCCCEEEEecCCCCcccCCCCchhhhHHHHHHHhCCCCCcE---EeecCcCCHHHHHHHHHcCcceee
Q 020013 121 DEA----RKAVNAGVDAIIVQGREAGGHVIGQDGLISLLPMVVDLIGDRDIPI---IAAGGIVDARGYVAALSLGAQGIC 193 (332)
Q Consensus 121 ~~a----~~a~~~g~D~ivv~G~eaGGh~~~~~~~~~ll~~i~~~~~~~~iPv---iaaGGI~~~~~v~~al~~GA~gV~ 193 (332)
+++ +...++|+|.|.+.|. .+...+.++.+.+ +.|+ +..+|-...-++.++-++|..-|.
T Consensus 161 deAI~Ra~ay~~AGAD~vfi~g~----------~~~e~i~~~~~~i---~~Pl~~n~~~~~~~p~~s~~eL~~lGv~~v~ 227 (285)
T TIGR02317 161 DAAIERAKAYVEAGADMIFPEAL----------TSLEEFRQFAKAV---KVPLLANMTEFGKTPLFTADELREAGYKMVI 227 (285)
T ss_pred HHHHHHHHHHHHcCCCEEEeCCC----------CCHHHHHHHHHhc---CCCEEEEeccCCCCCCCCHHHHHHcCCcEEE
Confidence 444 4466889999999653 1244566777766 5787 344554222367778889999999
Q ss_pred eccccccC
Q 020013 194 LGTRFVAS 201 (332)
Q Consensus 194 ~GT~fl~t 201 (332)
.|...+.+
T Consensus 228 ~~~~~~~a 235 (285)
T TIGR02317 228 YPVTAFRA 235 (285)
T ss_pred EchHHHHH
Confidence 99876655
|
Members of this family are methylisocitrate lyase, also called (2S,3R)-3-hydroxybutane-1,2,3-tricarboxylate pyruvate-lyase. This enzyme acts in propionate metabolism. It cleaves a carbon-carbon bond to convert 2-methylisocitrate to pyruvate plus succinate. Some members of this family have been annotated, incorrectly it seems, as the related protein carboxyphosphoenolpyruvate phosphomutase, which is involved in synthesizing the antibiotic bialaphos in Streptomyces hygroscopicus. |
| >PF02548 Pantoate_transf: Ketopantoate hydroxymethyltransferase; InterPro: IPR003700 The panB gene from Escherichia coli encodes the first enzyme of the pantothenate biosynthesis pathway, ketopantoate hydroxymethyltransferase (KPHMT) 2 | Back alignment and domain information |
|---|
Probab=94.45 E-value=1.4 Score=39.98 Aligned_cols=138 Identities=17% Similarity=0.194 Sum_probs=77.6
Q ss_pred CCcHHHHHHHHhCCC--------ceeecCC--C--CCCHHHHHHHHHHHHhhcCCcEEE-EeecCCC--C-HH----HHH
Q 020013 22 ISGPELVAAVANAGG--------LGLLRAP--D--WEAPDYLRDLIRKTRSLTERPFGV-GVVLAFP--H-NE----NIK 81 (332)
Q Consensus 22 ~s~~~la~avs~aGg--------lG~i~~~--~--~~~~e~~~~~i~~~r~~~~~p~gv-nl~~~~~--~-~~----~~~ 81 (332)
.-+-.+|..+.++|. +|....+ + -.+.|++....+.++.-.+.+|-+ ++.+..- . ++ ..+
T Consensus 23 aYD~~~A~~~d~agvD~iLVGDSlgmv~~G~~sT~~vtld~mi~h~~aV~Rga~~~~vv~DmPf~sy~~s~e~av~nA~r 102 (261)
T PF02548_consen 23 AYDYPSARIADEAGVDIILVGDSLGMVVLGYDSTLPVTLDEMIYHTKAVRRGAPNAFVVADMPFGSYQASPEQAVRNAGR 102 (261)
T ss_dssp --SHHHHHHHHHTT-SEEEE-TTHHHHTT--SSSTT--HHHHHHHHHHHHHH-TSSEEEEE--TTSSTSSHHHHHHHHHH
T ss_pred cccHHHHHHHHHcCCCEEEeCCcHHHheeCCCCCcCcCHHHHHHHHHHHHhcCCCceEEecCCcccccCCHHHHHHHHHH
Confidence 346677777777752 2222221 0 124455555556666655555554 3322111 1 12 234
Q ss_pred HHHhcCCcEEEEccCCCcHHHHHHHHhCCCEEEEecC-----------------CHH-------HHHHHHHcCCCEEEEe
Q 020013 82 AILSEKVAVLQVSWGEYSEELVLEAHSAGVKVVPQVG-----------------SFD-------EARKAVNAGVDAIIVQ 137 (332)
Q Consensus 82 ~~~~~~~~~I~~~~g~~~~~~i~~~~~~g~~v~~~v~-----------------s~~-------~a~~a~~~g~D~ivv~ 137 (332)
.+.+.|+|.|-+-.|....+.++.+.+.||+|+..++ +.+ +|+..+++|+=.|+++
T Consensus 103 l~ke~GadaVKlEGg~~~~~~i~~l~~~GIPV~gHiGLtPQ~~~~~GGyr~qGk~~~~a~~l~~~A~ale~AGaf~ivlE 182 (261)
T PF02548_consen 103 LMKEAGADAVKLEGGAEIAETIKALVDAGIPVMGHIGLTPQSVHQLGGYRVQGKTAEEAEKLLEDAKALEEAGAFAIVLE 182 (261)
T ss_dssp HHHTTT-SEEEEEBSGGGHHHHHHHHHTT--EEEEEES-GGGHHHHTSS--CSTSHHHHHHHHHHHHHHHHHT-SEEEEE
T ss_pred HHHhcCCCEEEeccchhHHHHHHHHHHCCCcEEEEecCchhheeccCCceEEecCHHHHHHHHHHHHHHHHcCccEEeee
Confidence 5556899999997665667899999999999997652 333 3445678999999996
Q ss_pred cCCCCcccCCCCchhhhHHHHHHHhCCCCCcEEeec
Q 020013 138 GREAGGHVIGQDGLISLLPMVVDLIGDRDIPIIAAG 173 (332)
Q Consensus 138 G~eaGGh~~~~~~~~~ll~~i~~~~~~~~iPviaaG 173 (332)
.. ...+-..|.+.+ +||+|..|
T Consensus 183 ~v-----------p~~la~~It~~l---~IPtIGIG 204 (261)
T PF02548_consen 183 CV-----------PAELAKAITEAL---SIPTIGIG 204 (261)
T ss_dssp SB-----------BHHHHHHHHHHS---SS-EEEES
T ss_pred cC-----------HHHHHHHHHHhC---CCCEEecC
Confidence 43 134566777777 89999544
|
1.2.11 from EC. Fungal ketopantoate hydroxymethyltransferase is essential for the biosynthesis of coenzyme A, while the pathway intermediate 4'-phosphopantetheine is required for penicillin production [].; GO: 0003864 3-methyl-2-oxobutanoate hydroxymethyltransferase activity, 0015940 pantothenate biosynthetic process; PDB: 3VAV_G 1M3U_A 3EZ4_J 1O68_C 1O66_A 1OY0_D. |
| >cd02810 DHOD_DHPD_FMN Dihydroorotate dehydrogenase (DHOD) and Dihydropyrimidine dehydrogenase (DHPD) FMN-binding domain | Back alignment and domain information |
|---|
Probab=94.42 E-value=0.45 Score=43.85 Aligned_cols=90 Identities=17% Similarity=0.168 Sum_probs=64.1
Q ss_pred CHHHHHHHHHHHHhhcCCcEEEEeecCCCC---HHHHHHHHhcCCcEEEEccCCC-------------------------
Q 020013 47 APDYLRDLIRKTRSLTERPFGVGVVLAFPH---NENIKAILSEKVAVLQVSWGEY------------------------- 98 (332)
Q Consensus 47 ~~e~~~~~i~~~r~~~~~p~gvnl~~~~~~---~~~~~~~~~~~~~~I~~~~g~~------------------------- 98 (332)
+++.+.+.++++|+.++.|+.+.+-..... .+.++.+.+.|+|+|.++.+..
T Consensus 146 ~~~~~~eiv~~vr~~~~~pv~vKl~~~~~~~~~~~~a~~l~~~Gad~i~~~~~~~~~~~~~~~~~~~~~~~~~g~sg~~~ 225 (289)
T cd02810 146 DPEAVANLLKAVKAAVDIPLLVKLSPYFDLEDIVELAKAAERAGADGLTAINTISGRVVDLKTVGPGPKRGTGGLSGAPI 225 (289)
T ss_pred CHHHHHHHHHHHHHccCCCEEEEeCCCCCHHHHHHHHHHHHHcCCCEEEEEcccCccceecccCccccCCCCCccCcHHH
Confidence 567888899999987788998887654332 3445667788999998752100
Q ss_pred ---cHHHHHHHHhC---CCEEEE--ecCCHHHHHHHHHcCCCEEEE
Q 020013 99 ---SEELVLEAHSA---GVKVVP--QVGSFDEARKAVNAGVDAIIV 136 (332)
Q Consensus 99 ---~~~~i~~~~~~---g~~v~~--~v~s~~~a~~a~~~g~D~ivv 136 (332)
..++++.+++. +++++. .+.+.+++.+....|+|.|-+
T Consensus 226 ~~~~~~~v~~i~~~~~~~ipiia~GGI~~~~da~~~l~~GAd~V~v 271 (289)
T cd02810 226 RPLALRWVARLAARLQLDIPIIGVGGIDSGEDVLEMLMAGASAVQV 271 (289)
T ss_pred HHHHHHHHHHHHHhcCCCCCEEEECCCCCHHHHHHHHHcCccHheE
Confidence 02345555543 577774 578999999999999999977
|
DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively. DHPD catalyzes the first step in pyrimidine degradation: the NADPH-dependent reduction of uracil and thymine to the corresponding 5,6-dihydropyrimidines. DHPD contains two FAD, two FMN and eight [4Fe-4S] clusters, arranged in two electron transfer chains that pass its homodimeric interface twice. Two of |
| >TIGR00683 nanA N-acetylneuraminate lyase | Back alignment and domain information |
|---|
Probab=94.41 E-value=0.43 Score=44.22 Aligned_cols=122 Identities=18% Similarity=0.178 Sum_probs=66.9
Q ss_pred HHHHHHHcC-CCEEEEecCCCCcccCCCCchhhhHHHHHHHhCCCCCcEEee-cCcCCHHHHH----HHHHcCcceeeec
Q 020013 122 EARKAVNAG-VDAIIVQGREAGGHVIGQDGLISLLPMVVDLIGDRDIPIIAA-GGIVDARGYV----AALSLGAQGICLG 195 (332)
Q Consensus 122 ~a~~a~~~g-~D~ivv~G~eaGGh~~~~~~~~~ll~~i~~~~~~~~iPviaa-GGI~~~~~v~----~al~~GA~gV~~G 195 (332)
..+...+.| +|+|++-|..+-++......-..++..+++...+ ++||++. |+.++ +++. .+-++|||+|++.
T Consensus 26 ~i~~~i~~G~v~gi~~~GstGE~~~Lt~eEr~~~~~~~~~~~~~-~~pvi~gv~~~~t-~~~i~la~~a~~~Gad~v~v~ 103 (290)
T TIGR00683 26 IIRHNIDKMKVDGLYVGGSTGENFMLSTEEKKEIFRIAKDEAKD-QIALIAQVGSVNL-KEAVELGKYATELGYDCLSAV 103 (290)
T ss_pred HHHHHHhCCCcCEEEECCcccccccCCHHHHHHHHHHHHHHhCC-CCcEEEecCCCCH-HHHHHHHHHHHHhCCCEEEEe
Confidence 345567889 9999997664444331212234556666666543 6898866 55644 4443 3345899999998
Q ss_pred cccccCc-cCCCCHHHHHHHhcCCCceEEEEecccCCCCCCceeecChHHHhhhc
Q 020013 196 TRFVASE-ESYAHPEYKRKLVEMDKTEYTDVFGRARWPGAPHRVLQTPFFSNWKN 249 (332)
Q Consensus 196 T~fl~t~-Es~~~~~~k~~~~~~~~t~~t~~~~~~~~~g~~~R~l~n~~~~~~~~ 249 (332)
..+.... +...-+-|++......+.. ..+++. |+..+..+....+.++.+
T Consensus 104 ~P~y~~~~~~~i~~yf~~v~~~~~~lp-v~lYn~---P~~tg~~l~~~~i~~L~~ 154 (290)
T TIGR00683 104 TPFYYKFSFPEIKHYYDTIIAETGGLN-MIVYSI---PFLTGVNMGIEQFGELYK 154 (290)
T ss_pred CCcCCCCCHHHHHHHHHHHHhhCCCCC-EEEEeC---ccccccCcCHHHHHHHhc
Confidence 8766543 2222222333222222333 234542 444455566566655543
|
N-acetylneuraminate lyase is also known as N-acetylneuraminic acid aldolase, sialic acid aldolase, or sialate lyase. It is an intracellular enzyme. The structure of this homotetrameric enzyme related to dihydrodipicolinate synthase is known. In Clostridium tertium, the enzyme appears to be in an operon with a secreted sialidase that releases sialic acid from host sialoglycoconjugates. In several E. coli strains, however, this enzyme is responsible for N-acetyl-D-neuraminic acid synthesis for capsule production by condensing N-acetyl-D-mannosamine and pyruvate. |
| >cd00951 KDGDH 5-dehydro-4-deoxyglucarate dehydratase, also called 5-keto-4-deoxy-glucarate dehydratase (KDGDH), which is member of dihydrodipicolinate synthase (DHDPS) family that comprises several pyruvate-dependent class I aldolases | Back alignment and domain information |
|---|
Probab=94.40 E-value=0.43 Score=44.19 Aligned_cols=78 Identities=19% Similarity=0.302 Sum_probs=51.6
Q ss_pred HHHHHHHcCCCEEEEecCCCCcccCCCCchhhhHHHHHHHhCCCCCcEEeecCcCCHHHHHH----HHHcCcceeeeccc
Q 020013 122 EARKAVNAGVDAIIVQGREAGGHVIGQDGLISLLPMVVDLIGDRDIPIIAAGGIVDARGYVA----ALSLGAQGICLGTR 197 (332)
Q Consensus 122 ~a~~a~~~g~D~ivv~G~eaGGh~~~~~~~~~ll~~i~~~~~~~~iPviaaGGI~~~~~v~~----al~~GA~gV~~GT~ 197 (332)
.+....+.|+|+|++-|..+.++......-..++..+++...+ ++|||+.-|- +-++..+ +-++|||++++-..
T Consensus 26 l~~~l~~~Gv~gi~v~GstGE~~~Ls~eEr~~l~~~~~~~~~~-~~pvi~gv~~-~t~~~i~~a~~a~~~Gad~v~~~pP 103 (289)
T cd00951 26 HVEWLLSYGAAALFAAGGTGEFFSLTPDEYAQVVRAAVEETAG-RVPVLAGAGY-GTATAIAYAQAAEKAGADGILLLPP 103 (289)
T ss_pred HHHHHHHcCCCEEEECcCCcCcccCCHHHHHHHHHHHHHHhCC-CCCEEEecCC-CHHHHHHHHHHHHHhCCCEEEECCC
Confidence 3455678899999997765444432222235566666776643 6999987775 4455433 34589999999888
Q ss_pred cccC
Q 020013 198 FVAS 201 (332)
Q Consensus 198 fl~t 201 (332)
+...
T Consensus 104 ~y~~ 107 (289)
T cd00951 104 YLTE 107 (289)
T ss_pred CCCC
Confidence 7653
|
The enzyme is involved in glucarate metabolism, and its mechanism presumbly involves a Schiff-base intermediate similar to members of DHDPS family. While in the case of Pseudomonas sp. 5-dehydro-4-deoxy-D-glucarate is degraded by KDGDH to 2,5-dioxopentanoate, in certain species of Enterobacteriaceae it is degraded instead to pyruvate and glycerate. |
| >TIGR02708 L_lactate_ox L-lactate oxidase | Back alignment and domain information |
|---|
Probab=94.38 E-value=0.94 Score=43.39 Aligned_cols=43 Identities=19% Similarity=0.163 Sum_probs=36.3
Q ss_pred chhhhHHHHHHHhCCCCCcEEeecCcCCHHHHHHHHHcCcceeeecc
Q 020013 150 GLISLLPMVVDLIGDRDIPIIAAGGIVDARGYVAALSLGAQGICLGT 196 (332)
Q Consensus 150 ~~~~ll~~i~~~~~~~~iPviaaGGI~~~~~v~~al~~GA~gV~~GT 196 (332)
.+|..+..+++.. ++||++= ||.+.+++..+..+|+|+|+++.
T Consensus 215 ~~w~~i~~l~~~~---~~PvivK-Gv~~~eda~~a~~~Gvd~I~VS~ 257 (367)
T TIGR02708 215 LSPRDIEEIAGYS---GLPVYVK-GPQCPEDADRALKAGASGIWVTN 257 (367)
T ss_pred CCHHHHHHHHHhc---CCCEEEe-CCCCHHHHHHHHHcCcCEEEECC
Confidence 4577888888876 7999965 79999999999999999998843
|
Members of this protein oxidize L-lactate to pyruvate, reducing molecular oxygen to hydrogen peroxide. The enzyme is known in Aerococcus viridans, Streptococcus iniae, and some strains of Streptococcus pyogenes where it appears to contribute to virulence. |
| >PF03932 CutC: CutC family; InterPro: IPR005627 Copper transport in Escherichia coli is mediated by the products of at least six genes, cutA, cutB, cutC, cutD, cutE, and cutF | Back alignment and domain information |
|---|
Probab=94.37 E-value=0.34 Score=42.40 Aligned_cols=99 Identities=26% Similarity=0.375 Sum_probs=61.6
Q ss_pred EecCCHHHHHHHHHcCCCEEEE-ecCCCCcccCCCCchhhhHHHHHHHhCCCCCcEEee----cC-c-CCH-------HH
Q 020013 115 PQVGSFDEARKAVNAGVDAIIV-QGREAGGHVIGQDGLISLLPMVVDLIGDRDIPIIAA----GG-I-VDA-------RG 180 (332)
Q Consensus 115 ~~v~s~~~a~~a~~~g~D~ivv-~G~eaGGh~~~~~~~~~ll~~i~~~~~~~~iPviaa----GG-I-~~~-------~~ 180 (332)
..+.|++++..|.+.|+|-|=+ .+.+.||-+ +++.++..+++.. ++||.+- || . .|. ++
T Consensus 5 vcv~s~~~a~~A~~~GAdRiELc~~l~~GGlT----PS~g~i~~~~~~~---~ipv~vMIRpr~gdF~Ys~~E~~~M~~d 77 (201)
T PF03932_consen 5 VCVESLEDALAAEAGGADRIELCSNLEVGGLT----PSLGLIRQAREAV---DIPVHVMIRPRGGDFVYSDEEIEIMKED 77 (201)
T ss_dssp EEESSHHHHHHHHHTT-SEEEEEBTGGGT-B-------HHHHHHHHHHT---TSEEEEE--SSSS-S---HHHHHHHHHH
T ss_pred EEeCCHHHHHHHHHcCCCEEEECCCccCCCcC----cCHHHHHHHHhhc---CCceEEEECCCCCCccCCHHHHHHHHHH
Confidence 4578999999999999999976 445667664 5678888888766 7887652 44 2 233 34
Q ss_pred HHHHHHcCcceeeeccccccCccCCCCHHHHHHHhc-CCCceEE
Q 020013 181 YVAALSLGAQGICLGTRFVASEESYAHPEYKRKLVE-MDKTEYT 223 (332)
Q Consensus 181 v~~al~~GA~gV~~GT~fl~t~Es~~~~~~k~~~~~-~~~t~~t 223 (332)
+..+..+||||+++|- .+++.......-+.+++ ++....|
T Consensus 78 I~~~~~~GadG~VfG~---L~~dg~iD~~~~~~Li~~a~~~~~t 118 (201)
T PF03932_consen 78 IRMLRELGADGFVFGA---LTEDGEIDEEALEELIEAAGGMPVT 118 (201)
T ss_dssp HHHHHHTT-SEEEE-----BETTSSB-HHHHHHHHHHHTTSEEE
T ss_pred HHHHHHcCCCeeEEEe---ECCCCCcCHHHHHHHHHhcCCCeEE
Confidence 5566679999999983 35555677666555555 5655444
|
A mutation in one or more of these genes results in an increased copper sensitivity. Members of this family are between 200 and 300 amino acids in length and are found in both eukaryotes and bacteria.; GO: 0005507 copper ion binding, 0055070 copper ion homeostasis; PDB: 2BDQ_A 3IWP_I 1X8C_B 1X7I_A 1TWD_B. |
| >PRK11320 prpB 2-methylisocitrate lyase; Provisional | Back alignment and domain information |
|---|
Probab=94.29 E-value=4.5 Score=37.56 Aligned_cols=182 Identities=16% Similarity=0.184 Sum_probs=104.6
Q ss_pred chhhcCCccceecCCCCCCCCcHHHHHHHHhCCCceee-----------cCC--CCCCHHHHHHHHHHHHhhcCCcEEEE
Q 020013 3 WRGMLGFEYGIVQAPLGPDISGPELVAAVANAGGLGLL-----------RAP--DWEAPDYLRDLIRKTRSLTERPFGVG 69 (332)
Q Consensus 3 ~~~~l~~~~Pii~apM~~g~s~~~la~avs~aGglG~i-----------~~~--~~~~~e~~~~~i~~~r~~~~~p~gvn 69 (332)
|.+++.-.-|++ .| ++-++--|..+.++|.=.+. +.+ +..+.+++.+.++++...++.|+-+.
T Consensus 9 lr~ll~~~~~l~-~p---~~~Da~SAri~e~~Gf~ai~~Sg~~~a~~~lG~PD~g~l~~~e~~~~~~~I~~~~~iPviaD 84 (292)
T PRK11320 9 FRAALAAEKPLQ-IV---GTINAYHALLAERAGFKAIYLSGGGVAAASLGLPDLGITTLDDVLIDVRRITDACDLPLLVD 84 (292)
T ss_pred HHHHHcCCCcEE-ec---CCCCHHHHHHHHHcCCCEEEeCHHHHHhHhcCCCCCCCCCHHHHHHHHHHHHhccCCCEEEE
Confidence 455665445665 22 56677777777777621111 111 13455666677777777777887665
Q ss_pred eecCCCC----HHHHHHHHhcCCcEEEEcc-------C-------CCcHHHHHHHHh-----CCC--EEEEecC-----C
Q 020013 70 VVLAFPH----NENIKAILSEKVAVLQVSW-------G-------EYSEELVLEAHS-----AGV--KVVPQVG-----S 119 (332)
Q Consensus 70 l~~~~~~----~~~~~~~~~~~~~~I~~~~-------g-------~~~~~~i~~~~~-----~g~--~v~~~v~-----s 119 (332)
+=.-... ...++.+.+.|+..|++-- | .+.++.+++++. .+. .|+.-.. .
T Consensus 85 ~d~GyG~~~~v~r~V~~~~~aGaagi~IEDq~~pK~cg~~~~~~lv~~ee~~~kI~Aa~~a~~~~d~~IiARTDa~~~~g 164 (292)
T PRK11320 85 IDTGFGGAFNIARTVKSMIKAGAAAVHIEDQVGAKRCGHRPNKEIVSQEEMVDRIKAAVDARTDPDFVIMARTDALAVEG 164 (292)
T ss_pred CCCCCCCHHHHHHHHHHHHHcCCeEEEEecCCCccccCCCCCCcccCHHHHHHHHHHHHHhccCCCeEEEEecCcccccC
Confidence 3211111 3447778889999987721 1 123455555542 133 3332221 2
Q ss_pred HHHH----HHHHHcCCCEEEEecCCCCcccCCCCchhhhHHHHHHHhCCCCCcEE---eecCcCCHHHHHHHHHcCccee
Q 020013 120 FDEA----RKAVNAGVDAIIVQGREAGGHVIGQDGLISLLPMVVDLIGDRDIPII---AAGGIVDARGYVAALSLGAQGI 192 (332)
Q Consensus 120 ~~~a----~~a~~~g~D~ivv~G~eaGGh~~~~~~~~~ll~~i~~~~~~~~iPvi---aaGGI~~~~~v~~al~~GA~gV 192 (332)
.+++ +...++|+|.|.+.|. .+..-+.++.+.+ +.|++ ..+|-...-++.+.-++|..-|
T Consensus 165 ~deAI~Ra~aY~eAGAD~ifi~~~----------~~~~~i~~~~~~~---~~Pl~~n~~~~~~~p~~s~~~L~~lGv~~v 231 (292)
T PRK11320 165 LDAAIERAQAYVEAGADMIFPEAM----------TELEMYRRFADAV---KVPILANITEFGATPLFTTEELASAGVAMV 231 (292)
T ss_pred HHHHHHHHHHHHHcCCCEEEecCC----------CCHHHHHHHHHhc---CCCEEEEeccCCCCCCCCHHHHHHcCCcEE
Confidence 4444 4467899999999653 1245566777666 57873 3455321135667778999999
Q ss_pred eeccccccC
Q 020013 193 CLGTRFVAS 201 (332)
Q Consensus 193 ~~GT~fl~t 201 (332)
..|+..+.+
T Consensus 232 ~~~~~~~~a 240 (292)
T PRK11320 232 LYPLSAFRA 240 (292)
T ss_pred EEChHHHHH
Confidence 999876543
|
|
| >PRK12581 oxaloacetate decarboxylase; Provisional | Back alignment and domain information |
|---|
Probab=94.24 E-value=1.1 Score=44.17 Aligned_cols=122 Identities=16% Similarity=0.237 Sum_probs=77.1
Q ss_pred EEEeecCCCC-----HHHHHHHHhcCCcEEEEccCCC-c---HHHHHHHHhCCCEEEEec-------CC----HHHHHHH
Q 020013 67 GVGVVLAFPH-----NENIKAILSEKVAVLQVSWGEY-S---EELVLEAHSAGVKVVPQV-------GS----FDEARKA 126 (332)
Q Consensus 67 gvnl~~~~~~-----~~~~~~~~~~~~~~I~~~~g~~-~---~~~i~~~~~~g~~v~~~v-------~s----~~~a~~a 126 (332)
|.|++...++ ..+++.+.+.|+|++-+.-... . ...++.+++.|..+...+ ++ .+.++.+
T Consensus 93 G~n~vgy~~ypddvv~~fv~~a~~~Gidi~Rifd~lnd~~n~~~ai~~ak~~G~~~~~~i~yt~sp~~t~~y~~~~a~~l 172 (468)
T PRK12581 93 GQNLLGYRHYADDIVDKFISLSAQNGIDVFRIFDALNDPRNIQQALRAVKKTGKEAQLCIAYTTSPVHTLNYYLSLVKEL 172 (468)
T ss_pred cccccCccCCcchHHHHHHHHHHHCCCCEEEEcccCCCHHHHHHHHHHHHHcCCEEEEEEEEEeCCcCcHHHHHHHHHHH
Confidence 5576655443 2347888899999987642221 1 245667788888754322 12 2456778
Q ss_pred HHcCCCEEEEecCCCCcccCCCCchhhhHHHHHHHhCCCCCcEEeec----CcCCHHHHHHHHHcCcceeeec
Q 020013 127 VNAGVDAIIVQGREAGGHVIGQDGLISLLPMVVDLIGDRDIPIIAAG----GIVDARGYVAALSLGAQGICLG 195 (332)
Q Consensus 127 ~~~g~D~ivv~G~eaGGh~~~~~~~~~ll~~i~~~~~~~~iPviaaG----GI~~~~~v~~al~~GA~gV~~G 195 (332)
.+.|+|.|.+.-. .|.. .+.....++..+++.. ++||-.-+ |.+ ..+..+|+.+||+.|-..
T Consensus 173 ~~~Gad~I~IkDt--aG~l-~P~~v~~Lv~alk~~~---~~pi~~H~Hnt~GlA-~An~laAieAGad~vD~a 238 (468)
T PRK12581 173 VEMGADSICIKDM--AGIL-TPKAAKELVSGIKAMT---NLPLIVHTHATSGIS-QMTYLAAVEAGADRIDTA 238 (468)
T ss_pred HHcCCCEEEECCC--CCCc-CHHHHHHHHHHHHhcc---CCeEEEEeCCCCccH-HHHHHHHHHcCCCEEEee
Confidence 8999999988433 3433 3344567777777644 67876543 553 466677888999977654
|
|
| >cd02072 Glm_B12_BD B12 binding domain of glutamate mutase (Glm) | Back alignment and domain information |
|---|
Probab=94.22 E-value=0.65 Score=37.60 Aligned_cols=81 Identities=19% Similarity=0.172 Sum_probs=47.9
Q ss_pred HHHhCCCEEEE---ecCCHHHHHHHHHcCCCEEEEecCCCCcccCCCCchhhhHHHHHHHhCC---CCCcEEeecCcC-C
Q 020013 105 EAHSAGVKVVP---QVGSFDEARKAVNAGVDAIIVQGREAGGHVIGQDGLISLLPMVVDLIGD---RDIPIIAAGGIV-D 177 (332)
Q Consensus 105 ~~~~~g~~v~~---~v~s~~~a~~a~~~g~D~ivv~G~eaGGh~~~~~~~~~ll~~i~~~~~~---~~iPviaaGGI~-~ 177 (332)
.+++.|..|+- .++..+-++.+.+.++|+|.+..-- +.| +..++++.+.+++ .++||+..|++. .
T Consensus 22 ~L~~~GfeVidLG~~v~~e~~v~aa~~~~adiVglS~L~-t~~-------~~~~~~~~~~l~~~gl~~v~vivGG~~~i~ 93 (128)
T cd02072 22 AFTEAGFNVVNLGVLSPQEEFIDAAIETDADAILVSSLY-GHG-------EIDCKGLREKCDEAGLKDILLYVGGNLVVG 93 (128)
T ss_pred HHHHCCCEEEECCCCCCHHHHHHHHHHcCCCEEEEeccc-cCC-------HHHHHHHHHHHHHCCCCCCeEEEECCCCCC
Confidence 45667777762 3344445566778899999885431 112 3334444443321 268888888863 2
Q ss_pred HHH----HHHHHHcCcceee
Q 020013 178 ARG----YVAALSLGAQGIC 193 (332)
Q Consensus 178 ~~~----v~~al~~GA~gV~ 193 (332)
+++ ..++.++|.++|.
T Consensus 94 ~~d~~~~~~~L~~~Gv~~vf 113 (128)
T cd02072 94 KQDFEDVEKRFKEMGFDRVF 113 (128)
T ss_pred hhhhHHHHHHHHHcCCCEEE
Confidence 333 3557789988776
|
Glutamate mutase catalysis the conversion of (S)-glutamate with (2S,3S)-3-methylaspartate. The rearrangement reaction is initiated by the extraction of a hydrogen from the protein-bound substrate by a 5'-desoxyadenosyl radical, which is generated by the homolytic cleavage of the organometallic bond of the cofactor B12. Glm is a heterotetrameric molecule consisting of two alpha and two epsilon polypeptide chains. |
| >TIGR01037 pyrD_sub1_fam dihydroorotate dehydrogenase (subfamily 1) family protein | Back alignment and domain information |
|---|
Probab=94.21 E-value=0.63 Score=43.23 Aligned_cols=91 Identities=19% Similarity=0.269 Sum_probs=64.1
Q ss_pred CCHHHHHHHHHHHHhhcCCcEEEEeecCCCC-HHHHHHHHhcCCcEEEEcc---C-----------------CC--c---
Q 020013 46 EAPDYLRDLIRKTRSLTERPFGVGVVLAFPH-NENIKAILSEKVAVLQVSW---G-----------------EY--S--- 99 (332)
Q Consensus 46 ~~~e~~~~~i~~~r~~~~~p~gvnl~~~~~~-~~~~~~~~~~~~~~I~~~~---g-----------------~~--~--- 99 (332)
.+++.+.+.++++|+.++.|+.+.+-....+ .+..+.+.+.|+|.|.++. + .. +
T Consensus 140 ~~~~~~~eiv~~vr~~~~~pv~vKi~~~~~~~~~~a~~l~~~G~d~i~v~nt~~~~~~~~~~~~~~~~~~~gg~sg~~~~ 219 (300)
T TIGR01037 140 QDPELSADVVKAVKDKTDVPVFAKLSPNVTDITEIAKAAEEAGADGLTLINTLRGMKIDIKTGKPILANKTGGLSGPAIK 219 (300)
T ss_pred cCHHHHHHHHHHHHHhcCCCEEEECCCChhhHHHHHHHHHHcCCCEEEEEccCCccccccccCceeeCCCCccccchhhh
Confidence 3678889999999988788988886532211 3445567788999998751 1 00 0
Q ss_pred ---HHHHHHHHh-CCCEEEE--ecCCHHHHHHHHHcCCCEEEE
Q 020013 100 ---EELVLEAHS-AGVKVVP--QVGSFDEARKAVNAGVDAIIV 136 (332)
Q Consensus 100 ---~~~i~~~~~-~g~~v~~--~v~s~~~a~~a~~~g~D~ivv 136 (332)
.+.+.++++ .+++|+. .+.+.+++.+++..|+|.|.+
T Consensus 220 ~~~l~~v~~i~~~~~ipvi~~GGI~s~~da~~~l~~GAd~V~i 262 (300)
T TIGR01037 220 PIALRMVYDVYKMVDIPIIGVGGITSFEDALEFLMAGASAVQV 262 (300)
T ss_pred HHHHHHHHHHHhcCCCCEEEECCCCCHHHHHHHHHcCCCceee
Confidence 134555555 3677774 578999999999999999987
|
This family includes subfamily 1 dihydroorotate dehydrogenases while excluding the closely related subfamily 2 (TIGR01036). This family also includes a number of uncharacterized proteins and a domain of dihydropyrimidine dehydrogenase. The uncharacterized proteins might all be dihydroorotate dehydrogenase. |
| >cd00952 CHBPH_aldolase Trans-o-hydroxybenzylidenepyruvate hydratase-aldolase (HBPHA) and trans-2'-carboxybenzalpyruvate hydratase-aldolase (CBPHA) | Back alignment and domain information |
|---|
Probab=94.19 E-value=0.46 Score=44.49 Aligned_cols=79 Identities=23% Similarity=0.402 Sum_probs=50.3
Q ss_pred HHHHHHHcCCCEEEEecCCCCcccCCCCchhhhHHHHHHHhCCCCCcEEeecCcCCHHHHHH----HHHcCcceeeeccc
Q 020013 122 EARKAVNAGVDAIIVQGREAGGHVIGQDGLISLLPMVVDLIGDRDIPIIAAGGIVDARGYVA----ALSLGAQGICLGTR 197 (332)
Q Consensus 122 ~a~~a~~~g~D~ivv~G~eaGGh~~~~~~~~~ll~~i~~~~~~~~iPviaaGGI~~~~~v~~----al~~GA~gV~~GT~ 197 (332)
.+....+.|+|+|++-|..+.++......-..++..+++.+++ ++|||+.=|=.+.+++.+ +-++|||++++-+.
T Consensus 34 lv~~li~~Gv~Gi~v~GstGE~~~Lt~eEr~~v~~~~~~~~~g-rvpvi~Gv~~~~t~~ai~~a~~A~~~Gad~vlv~~P 112 (309)
T cd00952 34 LVERLIAAGVDGILTMGTFGECATLTWEEKQAFVATVVETVAG-RVPVFVGATTLNTRDTIARTRALLDLGADGTMLGRP 112 (309)
T ss_pred HHHHHHHcCCCEEEECcccccchhCCHHHHHHHHHHHHHHhCC-CCCEEEEeccCCHHHHHHHHHHHHHhCCCEEEECCC
Confidence 3455678999999997664444331222235556666766643 699886555334455433 34589999999988
Q ss_pred cccC
Q 020013 198 FVAS 201 (332)
Q Consensus 198 fl~t 201 (332)
+...
T Consensus 113 ~y~~ 116 (309)
T cd00952 113 MWLP 116 (309)
T ss_pred cCCC
Confidence 7654
|
HBPHA catalyzes HBP to salicyaldehyde and pyruvate. This reaction is part of the degradative pathways for naphthalene and naphthalenesulfonates by bacteria. CBPHA is homologous to HBPHA and catalyzes the cleavage of CBP to 2-carboxylbenzaldehyde and pyruvate during the degradation of phenanthrene. They are member of the DHDPS family of Schiff-base-dependent class I aldolases. |
| >PRK14041 oxaloacetate decarboxylase; Provisional | Back alignment and domain information |
|---|
Probab=94.19 E-value=2.2 Score=42.27 Aligned_cols=111 Identities=19% Similarity=0.271 Sum_probs=72.1
Q ss_pred HHHHHHHhcCCcEEEEccCCC-c---HHHHHHHHhCCCEEEEec-------CCH----HHHHHHHHcCCCEEEEecCCCC
Q 020013 78 ENIKAILSEKVAVLQVSWGEY-S---EELVLEAHSAGVKVVPQV-------GSF----DEARKAVNAGVDAIIVQGREAG 142 (332)
Q Consensus 78 ~~~~~~~~~~~~~I~~~~g~~-~---~~~i~~~~~~g~~v~~~v-------~s~----~~a~~a~~~g~D~ivv~G~eaG 142 (332)
..++.+.++|++.|.+..... . ...++.+++.|..+...+ .+. +.++.+.+.|+|.|.+.-. .
T Consensus 99 ~fv~~A~~~Gvd~irif~~lnd~~n~~~~i~~ak~~G~~v~~~i~~t~~p~~t~e~~~~~a~~l~~~Gad~I~i~Dt--~ 176 (467)
T PRK14041 99 LFVKKVAEYGLDIIRIFDALNDIRNLEKSIEVAKKHGAHVQGAISYTVSPVHTLEYYLEFARELVDMGVDSICIKDM--A 176 (467)
T ss_pred HHHHHHHHCCcCEEEEEEeCCHHHHHHHHHHHHHHCCCEEEEEEEeccCCCCCHHHHHHHHHHHHHcCCCEEEECCc--c
Confidence 347888899999987753221 1 134566677888765322 122 3466778899999988433 3
Q ss_pred cccCCCCchhhhHHHHHHHhCCCCCcEEee----cCcCCHHHHHHHHHcCcceeeec
Q 020013 143 GHVIGQDGLISLLPMVVDLIGDRDIPIIAA----GGIVDARGYVAALSLGAQGICLG 195 (332)
Q Consensus 143 Gh~~~~~~~~~ll~~i~~~~~~~~iPviaa----GGI~~~~~v~~al~~GA~gV~~G 195 (332)
|.. .+.....++..+++.+ ++||-.- -|.+ ..+..+|+.+||+.|-..
T Consensus 177 G~l-~P~~v~~Lv~~lk~~~---~vpI~~H~Hnt~GlA-~AN~laAieaGad~vD~s 228 (467)
T PRK14041 177 GLL-TPKRAYELVKALKKKF---GVPVEVHSHCTTGLA-SLAYLAAVEAGADMFDTA 228 (467)
T ss_pred CCc-CHHHHHHHHHHHHHhc---CCceEEEecCCCCcH-HHHHHHHHHhCCCEEEee
Confidence 443 3445577888888776 5777554 3553 466777888999987653
|
|
| >TIGR01521 FruBisAldo_II_B fructose-bisphosphate aldolase, class II, Calvin cycle subtype | Back alignment and domain information |
|---|
Probab=94.16 E-value=5 Score=38.11 Aligned_cols=178 Identities=17% Similarity=0.176 Sum_probs=109.8
Q ss_pred CCCcHHHHHHHHhCC---Cceeec-C-C---CCCCHHHHHHHHHHHHhhcC-CcEEEEeecCCCCHHHHHHHHhcCCcEE
Q 020013 21 DISGPELVAAVANAG---GLGLLR-A-P---DWEAPDYLRDLIRKTRSLTE-RPFGVGVVLAFPHNENIKAILSEKVAVL 91 (332)
Q Consensus 21 g~s~~~la~avs~aG---glG~i~-~-~---~~~~~e~~~~~i~~~r~~~~-~p~gvnl~~~~~~~~~~~~~~~~~~~~I 91 (332)
.+.+.+++.++-+|. ..++|- . . .+...+.+...++.+.+... .|+.+++=--. +.+.+..+++.|...|
T Consensus 22 N~~n~e~~~aii~AAEe~~sPvIlq~s~~~~~~~g~~~~~~~~~~~ae~~~~VPValHLDHg~-~~e~i~~Ai~~GFtSV 100 (347)
T TIGR01521 22 NVNNMEQMRAIMEAADKTDSPVILQASRGARSYAGAPFLRHLILAAIEEYPHIPVVMHQDHGN-SPATCQRAIQLGFTSV 100 (347)
T ss_pred eeCCHHHHHHHHHHHHHhCCCEEEECCcchhhhCCHHHHHHHHHHHHHhCCCCcEEEECCCCC-CHHHHHHHHHcCCCEE
Confidence 356777777776653 233331 1 1 13345566666666665553 78888763222 3567888899999988
Q ss_pred EEccCC--------CcH-------HHHHHHHhCCCEEE-----------------------------EecCCHHHHHHHH
Q 020013 92 QVSWGE--------YSE-------ELVLEAHSAGVKVV-----------------------------PQVGSFDEARKAV 127 (332)
Q Consensus 92 ~~~~g~--------~~~-------~~i~~~~~~g~~v~-----------------------------~~v~s~~~a~~a~ 127 (332)
-+.... +.+ ++++.++..|+.|= ...+++++|+...
T Consensus 101 MiDgS~l~~~~~~~p~eENI~~Tkevve~Ah~~GvsVEaELG~igg~e~~~~g~~d~~~~~~~~~~~~~~T~PeeA~~Fv 180 (347)
T TIGR01521 101 MMDGSLREDAKTPADYDYNVRVTAEVVAFAHAVGASVEGELGCLGSLETGMGEAEDGHGFEGVLDHSQLLTDPEEAADFV 180 (347)
T ss_pred eecCcCCcccCCCCCHHHHHHHHHHHHHHHHHcCCeEEEEeeecccccccccccccCcccccccchhhcCCCHHHHHHHH
Confidence 776332 222 34455555554331 0145778888866
Q ss_pred H-cCCCEEEE-ecCCCCcccC--CCC---chhhhHHHHHHHhCCCCCcEEeecCcCCH----------------------
Q 020013 128 N-AGVDAIIV-QGREAGGHVI--GQD---GLISLLPMVVDLIGDRDIPIIAAGGIVDA---------------------- 178 (332)
Q Consensus 128 ~-~g~D~ivv-~G~eaGGh~~--~~~---~~~~ll~~i~~~~~~~~iPviaaGGI~~~---------------------- 178 (332)
+ .|+|.+-+ .|.-=|-... .+. -.+.++.+|.+.++ ++|++.-||=+.+
T Consensus 181 ~~TgvD~LAvaiGt~HG~Yk~~~~p~~~~Ld~~rL~eI~~~v~--~vPLVLHGgSG~p~~~~~~~~~~~~~~~~~~g~p~ 258 (347)
T TIGR01521 181 KKTKVDALAVAIGTSHGAYKFTRKPTGEVLAIQRIEEIHARLP--DTHLVMHGSSSVPQEWLDIINEYGGEIKETYGVPV 258 (347)
T ss_pred HHHCcCEEehhcccccCCcCCCCCCChhhcCHHHHHHHHccCC--CCCEEEeCCCCCchHhhHHHHhhcccccccCCCCH
Confidence 4 69998876 2321111111 011 34788888888762 5999999988766
Q ss_pred HHHHHHHHcCcceeeeccccccC
Q 020013 179 RGYVAALSLGAQGICLGTRFVAS 201 (332)
Q Consensus 179 ~~v~~al~~GA~gV~~GT~fl~t 201 (332)
+++.+++.+|..-|=++|.+..+
T Consensus 259 e~i~~ai~~GI~KVNi~Tdl~~a 281 (347)
T TIGR01521 259 EEIVEGIKYGVRKVNIDTDLRLA 281 (347)
T ss_pred HHHHHHHHCCCeeEEeChHHHHH
Confidence 78888999999988888876543
|
Members of this family are class II examples of the enzyme fructose-bisphosphate aldolase, an enzyme both of glycolysis and (in the opposite direction) of the Calvin cycle of CO2 fixation. A deep split separates the tightly conserved yeast/E. coli/Mycobacterium subtype (all species lacking the Calvin cycle) represented by model TIGR01520 from a broader group of aldolases that includes both tagatose- and fructose-bisphosphate aldolases. This model represents a distinct, elongated, very well conserved subtype within the latter group. Most species with this aldolase subtype have the Calvin cycle. |
| >cd00954 NAL N-Acetylneuraminic acid aldolase, also called N-acetylneuraminate lyase (NAL), which catalyses the reversible aldol reaction of N-acetyl-D-mannosamine and pyruvate to give N-acetyl-D-neuraminic acid (D-sialic acid) | Back alignment and domain information |
|---|
Probab=94.14 E-value=0.57 Score=43.35 Aligned_cols=122 Identities=17% Similarity=0.206 Sum_probs=66.8
Q ss_pred HHHHHHHc-CCCEEEEecCCCCcccCCCCchhhhHHHHHHHhCCCCCcEEeecCcCCHHHHH----HHHHcCcceeeecc
Q 020013 122 EARKAVNA-GVDAIIVQGREAGGHVIGQDGLISLLPMVVDLIGDRDIPIIAAGGIVDARGYV----AALSLGAQGICLGT 196 (332)
Q Consensus 122 ~a~~a~~~-g~D~ivv~G~eaGGh~~~~~~~~~ll~~i~~~~~~~~iPviaaGGI~~~~~v~----~al~~GA~gV~~GT 196 (332)
.++...+. |+|+|++-|..+.++......-..++..+++...+ ++|||+.=|-.+.+++. .+..+|||++++-.
T Consensus 26 ~i~~l~~~~Gv~gi~~~GstGE~~~Lt~~Er~~~~~~~~~~~~~-~~~viagv~~~~~~~ai~~a~~a~~~Gad~v~~~~ 104 (288)
T cd00954 26 IVDYLIEKQGVDGLYVNGSTGEGFLLSVEERKQIAEIVAEAAKG-KVTLIAHVGSLNLKESQELAKHAEELGYDAISAIT 104 (288)
T ss_pred HHHHHHhcCCCCEEEECcCCcCcccCCHHHHHHHHHHHHHHhCC-CCeEEeccCCCCHHHHHHHHHHHHHcCCCEEEEeC
Confidence 34556778 99999997664444432211234556666666543 68988733322344433 44568999999988
Q ss_pred ccccCc-cCCCCHHHHHHHhcCC-CceEEEEecccCCCCCCceeecChHHHhhhc
Q 020013 197 RFVASE-ESYAHPEYKRKLVEMD-KTEYTDVFGRARWPGAPHRVLQTPFFSNWKN 249 (332)
Q Consensus 197 ~fl~t~-Es~~~~~~k~~~~~~~-~t~~t~~~~~~~~~g~~~R~l~n~~~~~~~~ 249 (332)
.+.... +...-+ |=+.+.++. +..+ .+++. |...+..+...++.++.+
T Consensus 105 P~y~~~~~~~i~~-~~~~v~~a~~~lpi-~iYn~---P~~tg~~l~~~~~~~L~~ 154 (288)
T cd00954 105 PFYYKFSFEEIKD-YYREIIAAAASLPM-IIYHI---PALTGVNLTLEQFLELFE 154 (288)
T ss_pred CCCCCCCHHHHHH-HHHHHHHhcCCCCE-EEEeC---ccccCCCCCHHHHHHHhc
Confidence 876542 212222 223334443 4332 33432 444445566666665544
|
It has a widespread application as biocatalyst for the synthesis of sialic acid and its derivatives. This enzyme has been shown to be quite specific for pyruvate as the donor, but flexible to a variety of D- and, to some extent, L-hexoses and pentoses as acceptor substrates. NAL is member of dihydrodipicolinate synthase family that comprises several pyruvate-dependent class I aldolases. |
| >TIGR01520 FruBisAldo_II_A fructose-bisphosphate aldolase, class II, yeast/E | Back alignment and domain information |
|---|
Probab=94.14 E-value=5.5 Score=37.93 Aligned_cols=151 Identities=11% Similarity=0.003 Sum_probs=90.4
Q ss_pred HHHHHHHHHhhcCCcEEEEeecCCCC-HHHHHHHHhcC-----------CcEEEEccCCCc--------HHHHHHHHhCC
Q 020013 51 LRDLIRKTRSLTERPFGVGVVLAFPH-NENIKAILSEK-----------VAVLQVSWGEYS--------EELVLEAHSAG 110 (332)
Q Consensus 51 ~~~~i~~~r~~~~~p~gvnl~~~~~~-~~~~~~~~~~~-----------~~~I~~~~g~~~--------~~~i~~~~~~g 110 (332)
+...+..+.+....|+.+++=--... .+.++.+++.+ ...|=+.....| .++++.++..|
T Consensus 87 ~~~~v~~~Ae~a~VPValHLDHg~~~~~~~i~~ai~ag~~~~~~~g~~gftSVMiDgS~lpfeENI~~TrevVe~Ah~~G 166 (357)
T TIGR01520 87 GAHHVHSIAEHYGVPVVLHTDHCAKKLLPWVDGLLEAGEKYFSAHGKPLFSSHMIDLSEEPIEENIEICVKYLKRMAKIK 166 (357)
T ss_pred HHHHHHHHHHHCCCCEEEECCCCCCcchHHHHHHHHhhhhhhhhcCCCCCceEEeeCCCCCHHHHHHHHHHHHHHHHHcC
Confidence 44455555555577888875322221 14567777765 555555422222 24455566666
Q ss_pred CEEE---------------------EecCCHHHHHHHHH-c----CCCEEEE-ecCCCCccc-CCCCchhhhHHHHHHHh
Q 020013 111 VKVV---------------------PQVGSFDEARKAVN-A----GVDAIIV-QGREAGGHV-IGQDGLISLLPMVVDLI 162 (332)
Q Consensus 111 ~~v~---------------------~~v~s~~~a~~a~~-~----g~D~ivv-~G~eaGGh~-~~~~~~~~ll~~i~~~~ 162 (332)
+.|= ...+++++|+...+ . |+|.+-+ .|.-=|-.. ..+.-.+.+|.++.+.+
T Consensus 167 vsVEaELG~vgG~Ed~~~~~~~~~~~~yTdPeeA~~Fv~~t~~~TgvD~LAvAiGT~HG~Yk~~~p~Ld~d~L~~I~~~~ 246 (357)
T TIGR01520 167 MWLEIEIGITGGEEDGVDNSHMDAEALYTQPEDVYYAYEELSKISPNFSIAAAFGNVHGVYKPGNVKLTPDILADGQEYV 246 (357)
T ss_pred CEEEEEecccCCccCCcccccccccccCCCHHHHHHHHHHhccCCCcceeeeeeccccCCcCCCCCccCHHHHHHHHHHH
Confidence 5441 11357888888764 2 8899876 343222221 12234588888885332
Q ss_pred -CCCCCc------EEeecCcCCH-HHHHHHHHcCcceeeeccccccC
Q 020013 163 -GDRDIP------IIAAGGIVDA-RGYVAALSLGAQGICLGTRFVAS 201 (332)
Q Consensus 163 -~~~~iP------viaaGGI~~~-~~v~~al~~GA~gV~~GT~fl~t 201 (332)
...++| ++.-||=+.+ +++.+++.+|..-|=++|.+..+
T Consensus 247 ~~~~~vP~~~~~pLVLHGgSGi~~e~i~kai~~GI~KINi~Tdl~~A 293 (357)
T TIGR01520 247 SEKLGLPAAKPLFFVFHGGSGSTKQEIKEALSYGVVKMNIDTDTQWA 293 (357)
T ss_pred HHhcCCCcCCCCcEEEeCCCCCCHHHHHHHHHCCCeEEEeCcHHHHH
Confidence 112566 8887765555 88999999999999999987544
|
coli subtype. This model represents one of two deeply split, architecturally distinct clades of the family that includes class II fructose-bisphosphate aldolases, tagatose-bisphosphate aldolases, and related uncharacterized proteins. This family is well-conserved and includes characterized FBA from Saccharomyces cerevisiae, Escherichia coli, and Corynebacterium glutamicum. Proteins outside the scope of this model may also be designated as class II fructose-bisphosphate aldolases, but are well separated in an alignment-based phylogenetic tree. |
| >PRK12653 fructose-6-phosphate aldolase; Reviewed | Back alignment and domain information |
|---|
Probab=94.13 E-value=2.4 Score=37.66 Aligned_cols=135 Identities=13% Similarity=0.102 Sum_probs=80.6
Q ss_pred HHHHHhhc--CCcEEEEeecCCCCHHHHHH---HHhcCCcEEE-EccCCCcHHHHHHHHhCCCEEEEe-cCCHHHHHHHH
Q 020013 55 IRKTRSLT--ERPFGVGVVLAFPHNENIKA---ILSEKVAVLQ-VSWGEYSEELVLEAHSAGVKVVPQ-VGSFDEARKAV 127 (332)
Q Consensus 55 i~~~r~~~--~~p~gvnl~~~~~~~~~~~~---~~~~~~~~I~-~~~g~~~~~~i~~~~~~g~~v~~~-v~s~~~a~~a~ 127 (332)
++++++.. +.|+-+.++..+ .++.++. +.+....++. +..-..--+.++.+++.|+++-.+ |-|++++..+.
T Consensus 43 ~~~i~~~~~~~~~v~~Qv~~~d-~e~mi~ea~~l~~~~~ni~IKIP~T~~Gl~A~~~L~~~GI~vn~T~vfs~~Qa~~Aa 121 (220)
T PRK12653 43 LPQLHEAMGGQGRLFAQVMATT-AEGMVNDARKLRSIIADIVVKVPVTAEGLAAIKMLKAEGIPTLGTAVYGAAQGLLSA 121 (220)
T ss_pred HHHHHHHhCCCCcEEEEEecCC-HHHHHHHHHHHHHhCCCEEEEeCCCHHHHHHHHHHHHcCCCeeEEEecCHHHHHHHH
Confidence 44454443 246666665432 2333333 3334445433 332111135677888899998755 67999999999
Q ss_pred HcCCCEEEE-ecC-CCCcccCCCCchhhhHHHHHHHhCC-CCCcEEeecCcCCHHHHHHHHHcCcceeeec
Q 020013 128 NAGVDAIIV-QGR-EAGGHVIGQDGLISLLPMVVDLIGD-RDIPIIAAGGIVDARGYVAALSLGAQGICLG 195 (332)
Q Consensus 128 ~~g~D~ivv-~G~-eaGGh~~~~~~~~~ll~~i~~~~~~-~~iPviaaGGI~~~~~v~~al~~GA~gV~~G 195 (332)
.+|+++|-. -|+ +.-|+ ..+.++.++.+.++. ..-+-|.+..+.+.+++.+++.+|+|.+-+.
T Consensus 122 ~aGa~yIspyvgR~~~~g~-----dg~~~i~~i~~~~~~~~~~tkILaAS~r~~~~v~~~~~~G~d~vTip 187 (220)
T PRK12653 122 LAGAEYVAPYVNRIDAQGG-----SGIQTVTDLQQLLKMHAPQAKVLAASFKTPRQALDCLLAGCESITLP 187 (220)
T ss_pred hcCCcEEEeecChHhhcCC-----ChHHHHHHHHHHHHhcCCCcEEEEEecCCHHHHHHHHHcCCCEEECC
Confidence 999999865 232 11111 124455555554421 1234566667889999999999999988763
|
|
| >PRK14040 oxaloacetate decarboxylase; Provisional | Back alignment and domain information |
|---|
Probab=94.13 E-value=1.7 Score=44.44 Aligned_cols=135 Identities=15% Similarity=0.230 Sum_probs=82.3
Q ss_pred HHHHHHHhh-cCCcE-----EEEeecCCCC-----HHHHHHHHhcCCcEEEEccCCC-cH---HHHHHHHhCCCEEEEec
Q 020013 53 DLIRKTRSL-TERPF-----GVGVVLAFPH-----NENIKAILSEKVAVLQVSWGEY-SE---ELVLEAHSAGVKVVPQV 117 (332)
Q Consensus 53 ~~i~~~r~~-~~~p~-----gvnl~~~~~~-----~~~~~~~~~~~~~~I~~~~g~~-~~---~~i~~~~~~g~~v~~~v 117 (332)
+.++.+++. .+.++ |.|++.+..+ ...++.+.++|+++|.+..... .. ..++.+++.|..+-..+
T Consensus 65 e~lr~l~~~~~~~~lqml~Rg~n~vg~~~ypddvv~~~v~~a~~~Gid~~rifd~lnd~~~~~~ai~~ak~~G~~~~~~i 144 (593)
T PRK14040 65 ERLRELKKAMPNTPQQMLLRGQNLLGYRHYADDVVERFVERAVKNGMDVFRVFDAMNDPRNLETALKAVRKVGAHAQGTL 144 (593)
T ss_pred HHHHHHHHhCCCCeEEEEecCcceeccccCcHHHHHHHHHHHHhcCCCEEEEeeeCCcHHHHHHHHHHHHHcCCeEEEEE
Confidence 334555443 34454 4566655443 2347788899999987753221 12 35667788888642211
Q ss_pred ---CCH--------HHHHHHHHcCCCEEEEecCCCCcccCCCCchhhhHHHHHHHhCCCCCcEEee----cCcCCHHHHH
Q 020013 118 ---GSF--------DEARKAVNAGVDAIIVQGREAGGHVIGQDGLISLLPMVVDLIGDRDIPIIAA----GGIVDARGYV 182 (332)
Q Consensus 118 ---~s~--------~~a~~a~~~g~D~ivv~G~eaGGh~~~~~~~~~ll~~i~~~~~~~~iPviaa----GGI~~~~~v~ 182 (332)
.++ +-++.+.+.|+|.|.+.-. .|.. .+.....+++.+++.+ ++||-.- -|.+ ..+..
T Consensus 145 ~yt~~p~~~~~~~~~~a~~l~~~Gad~i~i~Dt--~G~l-~P~~~~~lv~~lk~~~---~~pi~~H~Hnt~GlA-~An~l 217 (593)
T PRK14040 145 SYTTSPVHTLQTWVDLAKQLEDMGVDSLCIKDM--AGLL-KPYAAYELVSRIKKRV---DVPLHLHCHATTGLS-TATLL 217 (593)
T ss_pred EEeeCCccCHHHHHHHHHHHHHcCCCEEEECCC--CCCc-CHHHHHHHHHHHHHhc---CCeEEEEECCCCchH-HHHHH
Confidence 122 3456778899999988433 3332 3445577888888776 5777554 3453 35566
Q ss_pred HHHHcCcceeee
Q 020013 183 AALSLGAQGICL 194 (332)
Q Consensus 183 ~al~~GA~gV~~ 194 (332)
+++.+||+.|..
T Consensus 218 aAieAGa~~vD~ 229 (593)
T PRK14040 218 KAIEAGIDGVDT 229 (593)
T ss_pred HHHHcCCCEEEe
Confidence 778899997764
|
|
| >COG0274 DeoC Deoxyribose-phosphate aldolase [Nucleotide transport and metabolism] | Back alignment and domain information |
|---|
Probab=94.11 E-value=0.15 Score=44.96 Aligned_cols=63 Identities=29% Similarity=0.427 Sum_probs=43.8
Q ss_pred HHHHcCCCEEEE-ecCCCCcccCCCCchhhhHHHHHHHhCCCCCcEEeecCcCCHHHHHHHHHcCcceeee
Q 020013 125 KAVNAGVDAIIV-QGREAGGHVIGQDGLISLLPMVVDLIGDRDIPIIAAGGIVDARGYVAALSLGAQGICL 194 (332)
Q Consensus 125 ~a~~~g~D~ivv-~G~eaGGh~~~~~~~~~ll~~i~~~~~~~~iPviaaGGI~~~~~v~~al~~GA~gV~~ 194 (332)
.+.++|+|+|.- .|+..+|- +..-+.-+++.++. .+.|=++|||.|.+++.+++.+||.-+-.
T Consensus 148 i~~~aGAdFVKTSTGf~~~gA------T~edv~lM~~~vg~-~vgvKaSGGIrt~eda~~~i~aga~RiGt 211 (228)
T COG0274 148 IAIEAGADFVKTSTGFSAGGA------TVEDVKLMKETVGG-RVGVKASGGIRTAEDAKAMIEAGATRIGT 211 (228)
T ss_pred HHHHhCCCEEEcCCCCCCCCC------CHHHHHHHHHHhcc-CceeeccCCcCCHHHHHHHHHHhHHHhcc
Confidence 356899999986 34543332 23344444444432 68899999999999999999999665443
|
|
| >COG5016 Pyruvate/oxaloacetate carboxyltransferase [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=94.11 E-value=0.46 Score=45.50 Aligned_cols=123 Identities=18% Similarity=0.262 Sum_probs=82.4
Q ss_pred EEEEeecCCCC-----HHHHHHHHhcCCcEEEEccC-CCcHH---HHHHHHhCCCEEEEe-------cCCH----HHHHH
Q 020013 66 FGVGVVLAFPH-----NENIKAILSEKVAVLQVSWG-EYSEE---LVLEAHSAGVKVVPQ-------VGSF----DEARK 125 (332)
Q Consensus 66 ~gvnl~~~~~~-----~~~~~~~~~~~~~~I~~~~g-~~~~~---~i~~~~~~g~~v~~~-------v~s~----~~a~~ 125 (332)
-|.|++....+ +.+++.+.++|.|++-+.-. ..+.+ -++..++.|..+-.. ++++ +-+++
T Consensus 85 RGQNlvGYrhyaDDvVe~Fv~ka~~nGidvfRiFDAlND~RNl~~ai~a~kk~G~h~q~~i~YT~sPvHt~e~yv~~ake 164 (472)
T COG5016 85 RGQNLVGYRHYADDVVEKFVEKAAENGIDVFRIFDALNDVRNLKTAIKAAKKHGAHVQGTISYTTSPVHTLEYYVELAKE 164 (472)
T ss_pred ccCccccccCCchHHHHHHHHHHHhcCCcEEEechhccchhHHHHHHHHHHhcCceeEEEEEeccCCcccHHHHHHHHHH
Confidence 37888875543 45677788899999876411 12333 345566677654322 3343 45778
Q ss_pred HHHcCCCEEEEecCCCCcccCCCCchhhhHHHHHHHhCCCCCcEE----eecCcCCHHHHHHHHHcCcceeeec
Q 020013 126 AVNAGVDAIIVQGREAGGHVIGQDGLISLLPMVVDLIGDRDIPII----AAGGIVDARGYVAALSLGAQGICLG 195 (332)
Q Consensus 126 a~~~g~D~ivv~G~eaGGh~~~~~~~~~ll~~i~~~~~~~~iPvi----aaGGI~~~~~v~~al~~GA~gV~~G 195 (332)
.++.|+|.|++.-. .|-. .+.....++..+++.+ ++||- +..|+ ..-...+++.+|+|++-..
T Consensus 165 l~~~g~DSIciKDm--aGll-tP~~ayelVk~iK~~~---~~pv~lHtH~TsG~-a~m~ylkAvEAGvD~iDTA 231 (472)
T COG5016 165 LLEMGVDSICIKDM--AGLL-TPYEAYELVKAIKKEL---PVPVELHTHATSGM-AEMTYLKAVEAGVDGIDTA 231 (472)
T ss_pred HHHcCCCEEEeecc--cccC-ChHHHHHHHHHHHHhc---CCeeEEecccccch-HHHHHHHHHHhCcchhhhh
Confidence 88999999999644 3443 4456688999998887 68876 46788 4566677888999988643
|
|
| >TIGR02320 PEP_mutase phosphoenolpyruvate phosphomutase | Back alignment and domain information |
|---|
Probab=94.08 E-value=4.9 Score=37.19 Aligned_cols=147 Identities=10% Similarity=0.118 Sum_probs=82.4
Q ss_pred CCHHHHHHHHHHHHhhcCCcEEEEeecCCC---CHHHHHHHHhcCCcEEEEc----------cC-------CCcHHHHHH
Q 020013 46 EAPDYLRDLIRKTRSLTERPFGVGVVLAFP---HNENIKAILSEKVAVLQVS----------WG-------EYSEELVLE 105 (332)
Q Consensus 46 ~~~e~~~~~i~~~r~~~~~p~gvnl~~~~~---~~~~~~~~~~~~~~~I~~~----------~g-------~~~~~~i~~ 105 (332)
.+.+++...++.+...++.|+.+..=.-.. ..+.++.+.+.|+..|.+- .| .+..+.+++
T Consensus 61 ~~~~e~~~~~~~I~~a~~~Pv~~D~d~Gg~~~~v~r~V~~l~~aGvaGi~iEDq~~pk~cg~~~~~~~~~l~s~ee~~~k 140 (285)
T TIGR02320 61 ASWTQRLDVVEFMFDVTTKPIILDGDTGGNFEHFRRLVRKLERRGVSAVCIEDKLGLKKNSLFGNDVAQPQASVEEFCGK 140 (285)
T ss_pred CCHHHHHHHHHHHHhhcCCCEEEecCCCCCHHHHHHHHHHHHHcCCeEEEEeccCCCccccccCCCCcccccCHHHHHHH
Confidence 455666666666666677886554322111 1344677788999999871 11 123344444
Q ss_pred HH---hC----CCEEEEe----c--CCHHH----HHHHHHcCCCEEEEecCCCCcccCCCCchhhhHHHHHHHhCC--CC
Q 020013 106 AH---SA----GVKVVPQ----V--GSFDE----ARKAVNAGVDAIIVQGREAGGHVIGQDGLISLLPMVVDLIGD--RD 166 (332)
Q Consensus 106 ~~---~~----g~~v~~~----v--~s~~~----a~~a~~~g~D~ivv~G~eaGGh~~~~~~~~~ll~~i~~~~~~--~~ 166 (332)
++ +. .+.|+.- + ...++ ++.+.++|+|+|.+.+ +.. +..-+.++.+.++. .+
T Consensus 141 I~Aa~~a~~~~~~~IiARTDa~~~~~~~~eAi~Ra~ay~eAGAD~ifv~~----~~~-----~~~ei~~~~~~~~~~~p~ 211 (285)
T TIGR02320 141 IRAGKDAQTTEDFMIIARVESLILGKGMEDALKRAEAYAEAGADGIMIHS----RKK-----DPDEILEFARRFRNHYPR 211 (285)
T ss_pred HHHHHHhccCCCeEEEEecccccccCCHHHHHHHHHHHHHcCCCEEEecC----CCC-----CHHHHHHHHHHhhhhCCC
Confidence 43 22 2445443 1 12333 4557789999999962 111 12333444444321 14
Q ss_pred CcEEeecCcCCHHHHHHHHHcCcceeeeccccccC
Q 020013 167 IPIIAAGGIVDARGYVAALSLGAQGICLGTRFVAS 201 (332)
Q Consensus 167 iPviaaGGI~~~~~v~~al~~GA~gV~~GT~fl~t 201 (332)
+|++...+-...-++.++-++|+.-|..|...+..
T Consensus 212 ~pl~~~~~~~~~~~~~eL~~lG~~~v~~~~~~~~a 246 (285)
T TIGR02320 212 TPLVIVPTSYYTTPTDEFRDAGISVVIYANHLLRA 246 (285)
T ss_pred CCEEEecCCCCCCCHHHHHHcCCCEEEEhHHHHHH
Confidence 68876554212235777788999999998876644
|
A closely related enzyme, phosphonopyruvate hydrolase from Variovorax sp. Pal2, is excluded from this model. |
| >PRK05265 pyridoxine 5'-phosphate synthase; Provisional | Back alignment and domain information |
|---|
Probab=94.01 E-value=4.3 Score=36.31 Aligned_cols=173 Identities=16% Similarity=0.194 Sum_probs=98.2
Q ss_pred CcHHHHHHHH-hCCCceeecCCCCCCHHHHHHHHHHHHhhcCCcEEEEeecCCCCHHHHHHHHhcCCcEEEEc-------
Q 020013 23 SGPELVAAVA-NAGGLGLLRAPDWEAPDYLRDLIRKTRSLTERPFGVGVVLAFPHNENIKAILSEKVAVLQVS------- 94 (332)
Q Consensus 23 s~~~la~avs-~aGglG~i~~~~~~~~e~~~~~i~~~r~~~~~p~gvnl~~~~~~~~~~~~~~~~~~~~I~~~------- 94 (332)
.+|--++..+ ++|+-|+..-.+-..-.--.+.+..+++....+++ +=+.. .++.++.+++.+|+-|.+-
T Consensus 24 Pd~v~aA~~a~~aGAdgITvHlReDrRHI~d~Dv~~L~~~~~~~lN--lE~a~-~~em~~ia~~~kP~~vtLVPE~r~E~ 100 (239)
T PRK05265 24 PDPVRAALIAEQAGADGITVHLREDRRHIRDRDVRLLRETLKTELN--LEMAA-TEEMLDIALEVKPHQVTLVPEKREEL 100 (239)
T ss_pred CCHHHHHHHHHHcCCCEEEecCCCCcccCCHHHHHHHHHhcCCCEE--eccCC-CHHHHHHHHHCCCCEEEECCCCCCCc
Confidence 4554444444 45666655332110000012234455554444544 43332 3789999999999998753
Q ss_pred ---cCCC-------cHHHHHHHHhCCCEEEEec-CCHHHHHHHHHcCCCEEEE-ecCCCCcccCCCCchhhhHHHHHHHh
Q 020013 95 ---WGEY-------SEELVLEAHSAGVKVVPQV-GSFDEARKAVNAGVDAIIV-QGREAGGHVIGQDGLISLLPMVVDLI 162 (332)
Q Consensus 95 ---~g~~-------~~~~i~~~~~~g~~v~~~v-~s~~~a~~a~~~g~D~ivv-~G~eaGGh~~~~~~~~~ll~~i~~~~ 162 (332)
.|.. ..++++++++.|+.|-.-+ +++++...+.+.|+|.|=+ .|..+-........-+..+....+..
T Consensus 101 TTegGldv~~~~~~l~~~i~~L~~~gIrVSLFidP~~~qi~~A~~~GAd~VELhTG~yA~a~~~~~~~el~~~~~aa~~a 180 (239)
T PRK05265 101 TTEGGLDVAGQFDKLKPAIARLKDAGIRVSLFIDPDPEQIEAAAEVGADRIELHTGPYADAKTEAEAAELERIAKAAKLA 180 (239)
T ss_pred cCCccchhhcCHHHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHhCcCEEEEechhhhcCCCcchHHHHHHHHHHHHHH
Confidence 1211 2357888999999876555 4778888999999999977 34322211101111123333322222
Q ss_pred CCCCCcEEeecCcCCHHHHHHHHHc-Ccceeeeccccc
Q 020013 163 GDRDIPIIAAGGIVDARGYVAALSL-GAQGICLGTRFV 199 (332)
Q Consensus 163 ~~~~iPviaaGGI~~~~~v~~al~~-GA~gV~~GT~fl 199 (332)
...++-|=+.-|+ |.+|+...... +-.-|-+|-+++
T Consensus 181 ~~lGL~VnAGHgL-ny~Nv~~i~~ip~i~EvnIGHsii 217 (239)
T PRK05265 181 ASLGLGVNAGHGL-NYHNVKPIAAIPGIEELNIGHAII 217 (239)
T ss_pred HHcCCEEecCCCC-CHHhHHHHhhCCCCeEEccCHHHH
Confidence 2236889999999 89999885442 456666665544
|
|
| >cd06557 KPHMT-like Ketopantoate hydroxymethyltransferase (KPHMT) is the first enzyme in the pantothenate biosynthesis pathway | Back alignment and domain information |
|---|
Probab=93.98 E-value=0.63 Score=42.28 Aligned_cols=88 Identities=24% Similarity=0.192 Sum_probs=55.7
Q ss_pred HHHHHhC-CCEEEEecCCHHHHHHHHHcCCCEEEEecCCCC----cccCCC-Cch---hhhHHHHHHHhCCCCCc-EEee
Q 020013 103 VLEAHSA-GVKVVPQVGSFDEARKAVNAGVDAIIVQGREAG----GHVIGQ-DGL---ISLLPMVVDLIGDRDIP-IIAA 172 (332)
Q Consensus 103 i~~~~~~-g~~v~~~v~s~~~a~~a~~~g~D~ivv~G~eaG----Gh~~~~-~~~---~~ll~~i~~~~~~~~iP-viaa 172 (332)
++.+++. ...+++.+.+.-.|+.+.++|+|+|.+ |...+ |+.+.. .+. ...++.+.+.. +.| |++.
T Consensus 4 lr~l~~~~~~l~~~~ayD~~sA~l~e~aG~d~i~v-Gds~~~~~lG~pDt~~vtl~em~~~~~~V~r~~---~~p~viaD 79 (254)
T cd06557 4 LQKMKKAGEKIVMLTAYDYPTAKLADEAGVDVILV-GDSLGMVVLGYDSTLPVTLDEMIYHTRAVRRGA---PRALVVAD 79 (254)
T ss_pred HHHHHhCCCcEEEEeCCCHHHHHHHHHcCCCEEEE-CHHHHHHHcCCCCCCCcCHHHHHHHHHHHHhcC---CCCeEEEe
Confidence 3445554 456778999999999999999999984 53222 443221 222 22333444433 678 6664
Q ss_pred cC---cCC-----HHHHHHHHH-cCcceeee
Q 020013 173 GG---IVD-----ARGYVAALS-LGAQGICL 194 (332)
Q Consensus 173 GG---I~~-----~~~v~~al~-~GA~gV~~ 194 (332)
-+ ..+ .+++.+.+. +||++|.+
T Consensus 80 ~~fg~y~~~~~~av~~a~r~~~~aGa~aVki 110 (254)
T cd06557 80 MPFGSYQTSPEQALRNAARLMKEAGADAVKL 110 (254)
T ss_pred CCCCcccCCHHHHHHHHHHHHHHhCCeEEEE
Confidence 44 545 444566777 99999998
|
Ketopantoate hydroxymethyltransferase (KPHMT) catalyzes the first committed step in the biosynthesis of pantothenate (vitamin B5), which is a precursor to coenzyme A and is required for penicillin biosynthesis. |
| >PRK03170 dihydrodipicolinate synthase; Provisional | Back alignment and domain information |
|---|
Probab=93.92 E-value=0.63 Score=43.05 Aligned_cols=121 Identities=16% Similarity=0.244 Sum_probs=66.4
Q ss_pred HHHHHHHcCCCEEEEecCCCCcccCCCCchhhhHHHHHHHhCCCCCcEEeecCcCCHHHHH----HHHHcCcceeeeccc
Q 020013 122 EARKAVNAGVDAIIVQGREAGGHVIGQDGLISLLPMVVDLIGDRDIPIIAAGGIVDARGYV----AALSLGAQGICLGTR 197 (332)
Q Consensus 122 ~a~~a~~~g~D~ivv~G~eaGGh~~~~~~~~~ll~~i~~~~~~~~iPviaaGGI~~~~~v~----~al~~GA~gV~~GT~ 197 (332)
.++...+.|+|+|++-|..+.++......-..++..+++.+++ ++||++.=|=.+-++.. .+-.+|||+|++...
T Consensus 27 ~i~~l~~~Gv~gi~~~Gs~GE~~~ls~~Er~~~~~~~~~~~~~-~~~vi~gv~~~~~~~~i~~a~~a~~~G~d~v~~~pP 105 (292)
T PRK03170 27 LVDYLIANGTDGLVVVGTTGESPTLTHEEHEELIRAVVEAVNG-RVPVIAGTGSNSTAEAIELTKFAEKAGADGALVVTP 105 (292)
T ss_pred HHHHHHHcCCCEEEECCcCCccccCCHHHHHHHHHHHHHHhCC-CCcEEeecCCchHHHHHHHHHHHHHcCCCEEEECCC
Confidence 4556778899999997765444432222235566666776643 58887443322334433 334589999999888
Q ss_pred cccCc-cCCCCHHHHHHHhcCCCceEEEEecccCCCCCCceeecChHHHhhh
Q 020013 198 FVASE-ESYAHPEYKRKLVEMDKTEYTDVFGRARWPGAPHRVLQTPFFSNWK 248 (332)
Q Consensus 198 fl~t~-Es~~~~~~k~~~~~~~~t~~t~~~~~~~~~g~~~R~l~n~~~~~~~ 248 (332)
+.... +...-+-| +.|.++.+..+ .++. .|+..++.+...+..++.
T Consensus 106 ~~~~~~~~~i~~~~-~~ia~~~~~pv-~lYn---~P~~~g~~l~~~~~~~L~ 152 (292)
T PRK03170 106 YYNKPTQEGLYQHF-KAIAEATDLPI-ILYN---VPGRTGVDILPETVARLA 152 (292)
T ss_pred cCCCCCHHHHHHHH-HHHHhcCCCCE-EEEE---CccccCCCCCHHHHHHHH
Confidence 76543 21122222 33333333332 2443 244445556666666554
|
|
| >cd00003 PNPsynthase Pyridoxine 5'-phosphate (PNP) synthase domain; pyridoxal 5'-phosphate is the active form of vitamin B6 that acts as an essential, ubiquitous coenzyme in amino acid metabolism | Back alignment and domain information |
|---|
Probab=93.91 E-value=3 Score=37.22 Aligned_cols=173 Identities=16% Similarity=0.198 Sum_probs=98.9
Q ss_pred CcHHHHHHHH-hCCCceeecCCCCCCHHHHHHHHHHHHhhcCCcEEEEeecCCCCHHHHHHHHhcCCcEEEEc-------
Q 020013 23 SGPELVAAVA-NAGGLGLLRAPDWEAPDYLRDLIRKTRSLTERPFGVGVVLAFPHNENIKAILSEKVAVLQVS------- 94 (332)
Q Consensus 23 s~~~la~avs-~aGglG~i~~~~~~~~e~~~~~i~~~r~~~~~p~gvnl~~~~~~~~~~~~~~~~~~~~I~~~------- 94 (332)
.+|--++..+ ++|+-|+..-.+-..-.--.+.+..+++....+++ +=+.. .++.++.+++.+|+.+.+-
T Consensus 21 Pdpv~aA~~a~~aGAdgITvHlReDrRHI~d~Dv~~L~~~~~~~lN--lE~a~-t~em~~ia~~~kP~~vtLVPEkr~E~ 97 (234)
T cd00003 21 PDPVEAALLAEKAGADGITVHLREDRRHIQDRDVRLLRELVRTELN--LEMAP-TEEMLEIALEVKPHQVTLVPEKREEL 97 (234)
T ss_pred CCHHHHHHHHHHcCCCEEEecCCCCcCcCCHHHHHHHHHHcCCCEE--eccCC-CHHHHHHHHHCCCCEEEECCCCCCCc
Confidence 4554444444 45656655322110000012234555555444544 43322 4789999999999998753
Q ss_pred ---cCCC-------cHHHHHHHHhCCCEEEEecC-CHHHHHHHHHcCCCEEEEe-cCCCCcccCCC-CchhhhHHHHHHH
Q 020013 95 ---WGEY-------SEELVLEAHSAGVKVVPQVG-SFDEARKAVNAGVDAIIVQ-GREAGGHVIGQ-DGLISLLPMVVDL 161 (332)
Q Consensus 95 ---~g~~-------~~~~i~~~~~~g~~v~~~v~-s~~~a~~a~~~g~D~ivv~-G~eaGGh~~~~-~~~~~ll~~i~~~ 161 (332)
.|.. ..++++++++.|+.|-.-+. ++++.+.+.+.|+|.|=+. |..+-.+.... ..-+..+....+.
T Consensus 98 TTegGldv~~~~~~l~~~i~~l~~~gI~VSLFiDPd~~qi~~A~~~GAd~VELhTG~Ya~a~~~~~~~~el~~i~~aa~~ 177 (234)
T cd00003 98 TTEGGLDVAGQAEKLKPIIERLKDAGIRVSLFIDPDPEQIEAAKEVGADRVELHTGPYANAYDKAEREAELERIAKAAKL 177 (234)
T ss_pred cCCccchhhcCHHHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHhCcCEEEEechhhhcCCCchhHHHHHHHHHHHHHH
Confidence 1211 23568889999999876654 6788889999999999773 43222211000 0112222222222
Q ss_pred hCCCCCcEEeecCcCCHHHHHHHHHc-Ccceeeeccccc
Q 020013 162 IGDRDIPIIAAGGIVDARGYVAALSL-GAQGICLGTRFV 199 (332)
Q Consensus 162 ~~~~~iPviaaGGI~~~~~v~~al~~-GA~gV~~GT~fl 199 (332)
....++-|=+.-|+ |.+|+....+. +-.-+-+|-+++
T Consensus 178 a~~~GL~VnAGHgL-ny~Nv~~i~~ip~i~ElnIGHsii 215 (234)
T cd00003 178 ARELGLGVNAGHGL-NYENVKPIAKIPGIAELNIGHAII 215 (234)
T ss_pred HHHcCCEEecCCCC-CHHHHHHHHhCCCCeEEccCHHHH
Confidence 22236888899999 89999876653 455666665544
|
In bacteria, formation of pyridoxine 5'-phosphate is a step in the biosynthesis of vitamin B6. PNP synthase, a homooctameric enzyme, catalyzes the final step in PNP biosynthesis, the condensation of 1-amino-acetone 3-phosphate and 1-deoxy-D-xylulose 5-phosphate. PNP synthase adopts a TIM barrel topology, intersubunit contacts are mediated by three ''extra'' helices, generating a tetramer of symmetric dimers with shared active sites; the open state has been proposed to accept substrates and to release products, while most of the catalytic events are likely to occur in the closed state; a hydrophilic channel running through the center of the barrel was identified as the essential structural feature that enables PNP synthase to release water molecules produced during the reaction from the closed, |
| >PF13714 PEP_mutase: Phosphoenolpyruvate phosphomutase; PDB: 1ZLP_A 3EOO_C 1UJQ_D 1O5Q_A 2DUA_A 2HJP_A 2HRW_A 2QIW_A 3KZ2_B 3IH1_B | Back alignment and domain information |
|---|
Probab=93.89 E-value=0.56 Score=42.21 Aligned_cols=91 Identities=27% Similarity=0.311 Sum_probs=61.6
Q ss_pred HHHHhC-CCEEEEecCCHHHHHHHHHcCCCEEEEecCC---CCcccCCC-Cc---hhhhHHHHHHHhCCCCCcEEee--c
Q 020013 104 LEAHSA-GVKVVPQVGSFDEARKAVNAGVDAIIVQGRE---AGGHVIGQ-DG---LISLLPMVVDLIGDRDIPIIAA--G 173 (332)
Q Consensus 104 ~~~~~~-g~~v~~~v~s~~~a~~a~~~g~D~ivv~G~e---aGGh~~~~-~~---~~~ll~~i~~~~~~~~iPviaa--G 173 (332)
+++++. +..+++.+.+.-.|+.+++.|.+++...|.. +-|..+.. .+ ....+..|.+.+ ++||++. .
T Consensus 2 r~L~~~~~~l~~p~~~D~~SAr~~e~~Gf~ai~~sg~~~a~s~G~pD~~~lt~~e~~~~~~~I~~~~---~iPv~vD~d~ 78 (238)
T PF13714_consen 2 RQLHEPGKPLVLPNVWDALSARLAERAGFDAIATSGAGVAASLGYPDGGLLTLTEMLAAVRRIARAV---SIPVIVDADT 78 (238)
T ss_dssp HHHHHSSSSEEEEEESSHHHHHHHHHTT-SEEEEHHHHHHHHTTS-SSS-S-HHHHHHHHHHHHHHS---SSEEEEE-TT
T ss_pred hhhhcCCCcEEeCCCcCHHHHHHHHHcCCCEEEechHHHHHHcCCCCCCCCCHHHHHHHHHHHHhhh---cCcEEEEccc
Confidence 346766 7788899999999999999999999886641 11333221 12 244455666665 8999976 4
Q ss_pred CcCC-----HHHHHHHHHcCcceeeeccc
Q 020013 174 GIVD-----ARGYVAALSLGAQGICLGTR 197 (332)
Q Consensus 174 GI~~-----~~~v~~al~~GA~gV~~GT~ 197 (332)
|-++ .+.+.++.++|+.|+.+=-.
T Consensus 79 GyG~~~~~v~~tv~~~~~aG~agi~IEDq 107 (238)
T PF13714_consen 79 GYGNDPENVARTVRELERAGAAGINIEDQ 107 (238)
T ss_dssp TSSSSHHHHHHHHHHHHHCT-SEEEEESB
T ss_pred ccCchhHHHHHHHHHHHHcCCcEEEeecc
Confidence 6666 45566777899999998655
|
... |
| >PRK09197 fructose-bisphosphate aldolase; Provisional | Back alignment and domain information |
|---|
Probab=93.88 E-value=3.9 Score=38.79 Aligned_cols=151 Identities=12% Similarity=0.034 Sum_probs=91.6
Q ss_pred HHHHHHHHHhhcCCcEEEEeecCCC-CHHHHHHHHhcC-----------CcEEEEccCCCc--------HHHHHHHHhCC
Q 020013 51 LRDLIRKTRSLTERPFGVGVVLAFP-HNENIKAILSEK-----------VAVLQVSWGEYS--------EELVLEAHSAG 110 (332)
Q Consensus 51 ~~~~i~~~r~~~~~p~gvnl~~~~~-~~~~~~~~~~~~-----------~~~I~~~~g~~~--------~~~i~~~~~~g 110 (332)
+...+..+.+..+.|+.+++=--.. ..+.+..+++.+ ...|-+.....| .++++..+..|
T Consensus 80 ~~~~v~~~A~~~~VPValHLDHg~~~~~~~i~~ai~~g~~~v~~a~~~gftSVMiDgS~lpfEeNI~~TkevVe~Ah~~G 159 (350)
T PRK09197 80 GAKHVHEVAEHYGVPVILHTDHCAKKLLPWIDGLLDAGEKHFAAGGKPLFSSHMIDLSEEPLEENIEICSKYLERMAKAG 159 (350)
T ss_pred HHHHHHHHHHHCCCCEEEECCCCCCcchHHHHHHHHhhHHHHHhcCCCCceeEEeeCCCCCHHHHHHHHHHHHHHHHHcC
Confidence 3344455545557888887632222 134555566655 666655433222 23455566666
Q ss_pred CEEE---------------------EecCCHHHHHHHHH-cCC----CEEEE-ecCCCCccc-CCCCchhhhHHHHHHHh
Q 020013 111 VKVV---------------------PQVGSFDEARKAVN-AGV----DAIIV-QGREAGGHV-IGQDGLISLLPMVVDLI 162 (332)
Q Consensus 111 ~~v~---------------------~~v~s~~~a~~a~~-~g~----D~ivv-~G~eaGGh~-~~~~~~~~ll~~i~~~~ 162 (332)
+.|= ...+++++|+...+ .|+ |.+-+ .|.-=|-.. ..+.-.+.++.++.+.+
T Consensus 160 vsVEaELG~Igg~Ed~~~~~~~~~~~~~TdPeeA~~Fv~~Tgv~~~~D~LAvaiGt~HG~Yk~~~p~Ld~e~L~~I~~~v 239 (350)
T PRK09197 160 MTLEIELGVTGGEEDGVDNSHEDNSKLYTQPEDVLYAYEALGKISGRFTIAASFGNVHGVYKPGNVKLRPEILKDSQEYV 239 (350)
T ss_pred CEEEEEEeccCCCcCCccccccccccccCCHHHHHHHHHHhCCCCcceEEeeecccccCCcCCCCCccCHHHHHHHHHHH
Confidence 5441 01357888888764 577 87766 343222221 12234588899988876
Q ss_pred CC------CCCcEEeecCcCCH-HHHHHHHHcCcceeeeccccccC
Q 020013 163 GD------RDIPIIAAGGIVDA-RGYVAALSLGAQGICLGTRFVAS 201 (332)
Q Consensus 163 ~~------~~iPviaaGGI~~~-~~v~~al~~GA~gV~~GT~fl~t 201 (332)
.+ .++|++.-||=+.+ +++.+++.+|..-|=++|.+..+
T Consensus 240 ~~~~~~~~~~vPLVLHGgSGipde~i~~ai~~GI~KINi~T~l~~a 285 (350)
T PRK09197 240 SKKFGLPAKPFDFVFHGGSGSTLEEIREAVSYGVVKMNIDTDTQWA 285 (350)
T ss_pred HHhhCCCCCCCCEEEeCCCCCCHHHHHHHHHCCCeeEEeCcHHHHH
Confidence 21 15999988876655 78899999999999999986544
|
|
| >PF02679 ComA: (2R)-phospho-3-sulfolactate synthase (ComA); InterPro: IPR003830 Methanogenic archaea produce methane via the anaerobic reduction of acetate or single carbon compounds [] | Back alignment and domain information |
|---|
Probab=93.84 E-value=0.23 Score=44.65 Aligned_cols=98 Identities=23% Similarity=0.368 Sum_probs=59.9
Q ss_pred CCHHHHHHHHHHHHhhcCCcEEEE-ee----c-CCCCHHHHHHHHhcCCcEEEEccCCC--c-H---HHHHHHHhCCCEE
Q 020013 46 EAPDYLRDLIRKTRSLTERPFGVG-VV----L-AFPHNENIKAILSEKVAVLQVSWGEY--S-E---ELVLEAHSAGVKV 113 (332)
Q Consensus 46 ~~~e~~~~~i~~~r~~~~~p~gvn-l~----~-~~~~~~~~~~~~~~~~~~I~~~~g~~--~-~---~~i~~~~~~g~~v 113 (332)
.+.+.+++.++..++. +.++..+ .+ . ....+++++.+.+.|.+.|.++-|.. + . ++++.+++.|.+|
T Consensus 51 ~~~~~l~eki~l~~~~-gV~v~~GGtl~E~a~~q~~~~~yl~~~k~lGf~~IEiSdGti~l~~~~r~~~I~~~~~~Gf~v 129 (244)
T PF02679_consen 51 YPEEILKEKIDLAHSH-GVYVYPGGTLFEVAYQQGKFDEYLEECKELGFDAIEISDGTIDLPEEERLRLIRKAKEEGFKV 129 (244)
T ss_dssp STCHHHHHHHHHHHCT-T-EEEE-HHHHHHHHHTT-HHHHHHHHHHCT-SEEEE--SSS---HHHHHHHHHHHCCTTSEE
T ss_pred cCHHHHHHHHHHHHHc-CCeEeCCcHHHHHHHhcChHHHHHHHHHHcCCCEEEecCCceeCCHHHHHHHHHHHHHCCCEE
Confidence 4556778788877764 2211111 00 1 11236788999999999999986642 1 1 4667777889999
Q ss_pred EEecCC--------------HHHHHHHHHcCCCEEEEecCCCCcc
Q 020013 114 VPQVGS--------------FDEARKAVNAGVDAIIVQGREAGGH 144 (332)
Q Consensus 114 ~~~v~s--------------~~~a~~a~~~g~D~ivv~G~eaGGh 144 (332)
+..++. ++.++..+++|+|.|++++.|+|-.
T Consensus 130 ~~EvG~K~~~~~~~~~~~~~i~~~~~dLeAGA~~ViiEarEsG~~ 174 (244)
T PF02679_consen 130 LSEVGKKDPESDFSLDPEELIEQAKRDLEAGADKVIIEARESGKG 174 (244)
T ss_dssp EEEES-SSHHHHTT--CCHHHHHHHHHHHHTECEEEE--TTT--S
T ss_pred eecccCCCchhcccCCHHHHHHHHHHHHHCCCCEEEEeeeccCCC
Confidence 987751 3456667899999999999988743
|
Coenzyme M (CoM; 2-mercaptoethanesulphonic acid) serves as the terminal methyl carrier for this process. Previously thought to be unique to methanogenic archaea, CoM has also been found in methylotrophic bacteria. Biosynthesis of CoM begins with the Michael addition of sulphite to phosphoenolpyruvate, forming 2-phospho-3-sulpholactate (PSL). This reaction is catalyzed by members of this family, PSL synthase (ComA) []. Subsequently, PSL is dephosphorylated by phosphosulpholactate phosphatase (ComB) to form 3-sulpholactate [], which is then converted to 3-sulphopyruvate by L-sulpholactate dehydrogenase (ComC; 1.1.1.272 from EC) []. Sulphopyruvate decarboxylase (ComDE; 4.1.1.79 from EC) converts 3-sulphopyruvate to sulphoacetaldehyde []. Reductive thiolation of sulphoacetaldehyde is the final step.; GO: 0019295 coenzyme M biosynthetic process; PDB: 1U83_A 1QWG_A. |
| >PRK03620 5-dehydro-4-deoxyglucarate dehydratase; Provisional | Back alignment and domain information |
|---|
Probab=93.77 E-value=0.34 Score=45.19 Aligned_cols=78 Identities=19% Similarity=0.261 Sum_probs=49.8
Q ss_pred HHHHHHHcCCCEEEEecCCCCcccCCCCchhhhHHHHHHHhCCCCCcEEeecCcCCHHHHHH----HHHcCcceeeeccc
Q 020013 122 EARKAVNAGVDAIIVQGREAGGHVIGQDGLISLLPMVVDLIGDRDIPIIAAGGIVDARGYVA----ALSLGAQGICLGTR 197 (332)
Q Consensus 122 ~a~~a~~~g~D~ivv~G~eaGGh~~~~~~~~~ll~~i~~~~~~~~iPviaaGGI~~~~~v~~----al~~GA~gV~~GT~ 197 (332)
.++...+.|+|+|++-|..+-++......-..++..+++.+.+ ++|||+.-|- +-++..+ +-++|||+|++-..
T Consensus 33 li~~l~~~Gv~Gi~~~GstGE~~~Lt~eEr~~~~~~~~~~~~~-~~pvi~gv~~-~t~~~i~~~~~a~~~Gadav~~~pP 110 (303)
T PRK03620 33 HLEWLAPYGAAALFAAGGTGEFFSLTPDEYSQVVRAAVETTAG-RVPVIAGAGG-GTAQAIEYAQAAERAGADGILLLPP 110 (303)
T ss_pred HHHHHHHcCCCEEEECcCCcCcccCCHHHHHHHHHHHHHHhCC-CCcEEEecCC-CHHHHHHHHHHHHHhCCCEEEECCC
Confidence 3455678899999997764444332222235556666666543 6999976664 4444433 34589999999888
Q ss_pred cccC
Q 020013 198 FVAS 201 (332)
Q Consensus 198 fl~t 201 (332)
+...
T Consensus 111 ~y~~ 114 (303)
T PRK03620 111 YLTE 114 (303)
T ss_pred CCCC
Confidence 7653
|
|
| >cd00377 ICL_PEPM Members of the ICL/PEPM enzyme family catalyze either P-C or C-C bond formation/cleavage | Back alignment and domain information |
|---|
Probab=93.72 E-value=5.1 Score=36.13 Aligned_cols=179 Identities=16% Similarity=0.210 Sum_probs=103.9
Q ss_pred hhhcCCccceecCCCCCCCCcHHHHHHHHhCCCceeecC--------C----CCCCHHHHHHHHHHHHhhcCCcEEEEee
Q 020013 4 RGMLGFEYGIVQAPLGPDISGPELVAAVANAGGLGLLRA--------P----DWEAPDYLRDLIRKTRSLTERPFGVGVV 71 (332)
Q Consensus 4 ~~~l~~~~Pii~apM~~g~s~~~la~avs~aGglG~i~~--------~----~~~~~e~~~~~i~~~r~~~~~p~gvnl~ 71 (332)
.+++.-.-|++ | .++-++-.+..+.++|.=.+... + ...+.+++...++.+...+..|+.+.+-
T Consensus 2 r~l~~~~~~i~---~-~~~~D~~sA~~~e~~G~~ai~~s~~~~~~s~G~pD~~~~~~~e~~~~~~~I~~~~~~Pv~~D~~ 77 (243)
T cd00377 2 RALLESGGPLV---L-PGAWDALSARLAERAGFKAIYTSGAGVAASLGLPDGGLLTLDEVLAAVRRIARAVDLPVIADAD 77 (243)
T ss_pred hhHHhCCCcEE---e-cCCCCHHHHHHHHHcCCCEEEeccHHHHHhcCCCCCCcCCHHHHHHHHHHHHhhccCCEEEEcC
Confidence 34554445665 3 25677777787777763111111 0 1235566667777776667788777643
Q ss_pred cCCCC----HHHHHHHHhcCCcEEEEc-------cC-------CCcHHHHHHHHh------C--CCEEEEe-----c--C
Q 020013 72 LAFPH----NENIKAILSEKVAVLQVS-------WG-------EYSEELVLEAHS------A--GVKVVPQ-----V--G 118 (332)
Q Consensus 72 ~~~~~----~~~~~~~~~~~~~~I~~~-------~g-------~~~~~~i~~~~~------~--g~~v~~~-----v--~ 118 (332)
.-..+ .+.++.+.+.|++.|.+- .| .++++.+++++. . .+.|+.- + .
T Consensus 78 ~G~g~~~~~~~~v~~~~~~G~~gv~iED~~~~k~~g~~~~~~~~~~ee~~~ki~aa~~a~~~~~~~~IiARTDa~~~~~~ 157 (243)
T cd00377 78 TGYGNALNVARTVRELEEAGAAGIHIEDQVGPKKCGHHGGKVLVPIEEFVAKIKAARDARDDLPDFVIIARTDALLAGEE 157 (243)
T ss_pred CCCCCHHHHHHHHHHHHHcCCEEEEEecCCCCccccCCCCCeecCHHHHHHHHHHHHHHHhccCCeEEEEEcCchhccCC
Confidence 32111 234666777899999871 01 123445554431 2 4556554 3 2
Q ss_pred CHHH----HHHHHHcCCCEEEEecCCCCcccCCCCchhhhHHHHHHHhCCCCCcEEeecCcCCH--HHHHHHHHcCccee
Q 020013 119 SFDE----ARKAVNAGVDAIIVQGREAGGHVIGQDGLISLLPMVVDLIGDRDIPIIAAGGIVDA--RGYVAALSLGAQGI 192 (332)
Q Consensus 119 s~~~----a~~a~~~g~D~ivv~G~eaGGh~~~~~~~~~ll~~i~~~~~~~~iPviaaGGI~~~--~~v~~al~~GA~gV 192 (332)
+.++ ++.+.++|+|.|.+.+.. +...+.++.+.. +.|+++--.= .+ -+..+.-++|..-|
T Consensus 158 ~~~eai~Ra~ay~~AGAD~v~v~~~~----------~~~~~~~~~~~~---~~Pl~~~~~~-~~~~~~~~~l~~lG~~~v 223 (243)
T cd00377 158 GLDEAIERAKAYAEAGADGIFVEGLK----------DPEEIRAFAEAP---DVPLNVNMTP-GGNLLTVAELAELGVRRV 223 (243)
T ss_pred CHHHHHHHHHHHHHcCCCEEEeCCCC----------CHHHHHHHHhcC---CCCEEEEecC-CCCCCCHHHHHHCCCeEE
Confidence 4444 445778999999996542 345566777665 6787664211 11 34556667899999
Q ss_pred eecccccc
Q 020013 193 CLGTRFVA 200 (332)
Q Consensus 193 ~~GT~fl~ 200 (332)
.+|...+.
T Consensus 224 ~~~~~~~~ 231 (243)
T cd00377 224 SYGLALLR 231 (243)
T ss_pred EEChHHHH
Confidence 99886543
|
Known members are phosphoenolpyruvate mutase (PEPM), phosphonopyruvate hydrolase (PPH), carboxyPEP mutase (CPEP mutase), oxaloacetate hydrolase (OAH), isocitrate lyase (ICL), and 2-methylisocitrate lyase (MICL). Isocitrate lyase (ICL) catalyzes the conversion of isocitrate to succinate and glyoxylate, the first committed step in the glyoxylate pathway. This carbon-conserving pathway is present in most prokaryotes, lower eukaryotes and plants, but has not been observed in vertebrates. PEP mutase (PEPM) turns phosphoenolpyruvate (PEP) into phosphonopyruvate (P-pyr), an important intermediate in the formation of organophosphonates, which function as antibiotics or play a role in pathogenesis or signaling. P-pyr can be hydrolyzed by phosphonopyruvate hydrolase (PPH) to from pyruvate and phosphate. Oxaloacetate acetylhydrolase (OAH) catalyzes the hydrolytic cleavage of oxaloacetate to |
| >cd03332 LMO_FMN L-Lactate 2-monooxygenase (LMO) FMN-binding domain | Back alignment and domain information |
|---|
Probab=93.70 E-value=1.6 Score=42.04 Aligned_cols=41 Identities=22% Similarity=0.421 Sum_probs=34.3
Q ss_pred hhhhHHHHHHHhCCCCCcEEeecCcCCHHHHHHHHHcCcceeeec
Q 020013 151 LISLLPMVVDLIGDRDIPIIAAGGIVDARGYVAALSLGAQGICLG 195 (332)
Q Consensus 151 ~~~ll~~i~~~~~~~~iPviaaGGI~~~~~v~~al~~GA~gV~~G 195 (332)
+|..+..+++.. ++|||+- ||.+.+++..++.+|+|+|++.
T Consensus 241 tW~~i~~lr~~~---~~pvivK-gV~~~~dA~~a~~~G~d~I~vs 281 (383)
T cd03332 241 TWEDLAFLREWT---DLPIVLK-GILHPDDARRAVEAGVDGVVVS 281 (383)
T ss_pred CHHHHHHHHHhc---CCCEEEe-cCCCHHHHHHHHHCCCCEEEEc
Confidence 467777777765 7898886 6679999999999999999984
|
LMO is a FMN-containing enzyme that catalyzes the conversion of L-lactate and oxygen to acetate, carbon dioxide, and water. LMO is a member of the family of alpha-hydroxy acid oxidases. It is thought to be a homooctamer with two- and four- fold axes in the center of the octamer. |
| >COG3010 NanE Putative N-acetylmannosamine-6-phosphate epimerase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=93.67 E-value=2.3 Score=37.12 Aligned_cols=106 Identities=24% Similarity=0.319 Sum_probs=65.4
Q ss_pred cHHHHHHHHhCCCceeec---CCCCCCHH-HHHHHHHHHHhhcCCcEEEEeecCCCCHHHHHHHHhcCCcEEEEcc-C--
Q 020013 24 GPELVAAVANAGGLGLLR---APDWEAPD-YLRDLIRKTRSLTERPFGVGVVLAFPHNENIKAILSEKVAVLQVSW-G-- 96 (332)
Q Consensus 24 ~~~la~avs~aGglG~i~---~~~~~~~e-~~~~~i~~~r~~~~~p~gvnl~~~~~~~~~~~~~~~~~~~~I~~~~-g-- 96 (332)
+-+-+.+++++|. -+|. .- ...|+ .+.+++++.+. ++ .=+|..-..-+..-.+.+.|+|+|-+.. |
T Consensus 87 tlkeVd~L~~~Ga-~IIA~DaT~-R~RP~~~~~~~i~~~k~-~~----~l~MAD~St~ee~l~a~~~G~D~IGTTLsGYT 159 (229)
T COG3010 87 TLKEVDALAEAGA-DIIAFDATD-RPRPDGDLEELIARIKY-PG----QLAMADCSTFEEGLNAHKLGFDIIGTTLSGYT 159 (229)
T ss_pred cHHHHHHHHHCCC-cEEEeeccc-CCCCcchHHHHHHHhhc-CC----cEEEeccCCHHHHHHHHHcCCcEEeccccccc
Confidence 4456677777763 2221 21 12244 56666666432 11 1112211112333456678999996532 1
Q ss_pred -------CCcHHHHHHHHhCCCEEEE--ecCCHHHHHHHHHcCCCEEEE
Q 020013 97 -------EYSEELVLEAHSAGVKVVP--QVGSFDEARKAVNAGVDAIIV 136 (332)
Q Consensus 97 -------~~~~~~i~~~~~~g~~v~~--~v~s~~~a~~a~~~g~D~ivv 136 (332)
.|...+++.+.+.|+.|+. ..+|++.|+++.+.|+++|+|
T Consensus 160 ~~~~~~~~pDf~lvk~l~~~~~~vIAEGr~~tP~~Ak~a~~~Ga~aVvV 208 (229)
T COG3010 160 GYTEKPTEPDFQLVKQLSDAGCRVIAEGRYNTPEQAKKAIEIGADAVVV 208 (229)
T ss_pred CCCCCCCCCcHHHHHHHHhCCCeEEeeCCCCCHHHHHHHHHhCCeEEEE
Confidence 1234688888889999996 588999999999999999999
|
|
| >PRK10415 tRNA-dihydrouridine synthase B; Provisional | Back alignment and domain information |
|---|
Probab=93.65 E-value=1.2 Score=42.07 Aligned_cols=91 Identities=13% Similarity=0.247 Sum_probs=64.9
Q ss_pred CCHHHHHHHHHHHHhhcCCcEEEEeecC-CC----CHHHHHHHHhcCCcEEEEccCC--------CcHHHHHHHHh-CCC
Q 020013 46 EAPDYLRDLIRKTRSLTERPFGVGVVLA-FP----HNENIKAILSEKVAVLQVSWGE--------YSEELVLEAHS-AGV 111 (332)
Q Consensus 46 ~~~e~~~~~i~~~r~~~~~p~gvnl~~~-~~----~~~~~~~~~~~~~~~I~~~~g~--------~~~~~i~~~~~-~g~ 111 (332)
.+|+.+.+.++.+++.++.|+.+-+-.. .+ ..+.++.+.+.|++.|.+|... ..-++++.+++ .++
T Consensus 116 ~~p~~~~eiv~av~~a~d~pv~vKiR~G~~~~~~~~~~~a~~le~~G~d~i~vh~rt~~~~~~G~a~~~~i~~ik~~~~i 195 (321)
T PRK10415 116 QYPDLVKSILTEVVNAVDVPVTLKIRTGWAPEHRNCVEIAQLAEDCGIQALTIHGRTRACLFNGEAEYDSIRAVKQKVSI 195 (321)
T ss_pred cCHHHHHHHHHHHHHhcCCceEEEEEccccCCcchHHHHHHHHHHhCCCEEEEecCccccccCCCcChHHHHHHHHhcCC
Confidence 3588899999999888888888765321 11 1244556677899999887321 22356666665 478
Q ss_pred EEEE--ecCCHHHHHHHHH-cCCCEEEE
Q 020013 112 KVVP--QVGSFDEARKAVN-AGVDAIIV 136 (332)
Q Consensus 112 ~v~~--~v~s~~~a~~a~~-~g~D~ivv 136 (332)
+|+. .+.|.++++++.+ .|+|+|.+
T Consensus 196 PVI~nGgI~s~~da~~~l~~~gadgVmi 223 (321)
T PRK10415 196 PVIANGDITDPLKARAVLDYTGADALMI 223 (321)
T ss_pred cEEEeCCCCCHHHHHHHHhccCCCEEEE
Confidence 8875 5789999999886 69999988
|
|
| >PRK14042 pyruvate carboxylase subunit B; Provisional | Back alignment and domain information |
|---|
Probab=93.63 E-value=2.6 Score=43.05 Aligned_cols=121 Identities=16% Similarity=0.135 Sum_probs=77.4
Q ss_pred EEEeecCCCC-----HHHHHHHHhcCCcEEEEccCCC----cHHHHHHHHhCCCEEEEe-------cCCHH----HHHHH
Q 020013 67 GVGVVLAFPH-----NENIKAILSEKVAVLQVSWGEY----SEELVLEAHSAGVKVVPQ-------VGSFD----EARKA 126 (332)
Q Consensus 67 gvnl~~~~~~-----~~~~~~~~~~~~~~I~~~~g~~----~~~~i~~~~~~g~~v~~~-------v~s~~----~a~~a 126 (332)
|.|++...+. ...++.+.+.|+|++-+.-... ....++.+++.|..+... +++++ .++.+
T Consensus 84 g~N~vGy~~~~d~vv~~~v~~a~~~Gidv~Rifd~lnd~~n~~~~i~~~k~~G~~~~~~i~yt~sp~~t~e~~~~~ak~l 163 (596)
T PRK14042 84 GQNLLGYRNYADDVVRAFVKLAVNNGVDVFRVFDALNDARNLKVAIDAIKSHKKHAQGAICYTTSPVHTLDNFLELGKKL 163 (596)
T ss_pred cccccccccCChHHHHHHHHHHHHcCCCEEEEcccCcchHHHHHHHHHHHHcCCEEEEEEEecCCCCCCHHHHHHHHHHH
Confidence 3466554432 2367788899999987642221 123466778888876543 23444 45667
Q ss_pred HHcCCCEEEEecCCCCcccCCCCchhhhHHHHHHHhCCCCCcEEeec----CcCCHHHHHHHHHcCcceeee
Q 020013 127 VNAGVDAIIVQGREAGGHVIGQDGLISLLPMVVDLIGDRDIPIIAAG----GIVDARGYVAALSLGAQGICL 194 (332)
Q Consensus 127 ~~~g~D~ivv~G~eaGGh~~~~~~~~~ll~~i~~~~~~~~iPviaaG----GI~~~~~v~~al~~GA~gV~~ 194 (332)
.+.|+|.|.+.-. .|.. .+.....++..+++.+ ++||-.-+ |.+ ..+..+|+.+|||.|-.
T Consensus 164 ~~~Gad~I~IkDt--aG~l-~P~~v~~lv~alk~~~---~ipi~~H~Hnt~Gla-~an~laAieaGad~iD~ 228 (596)
T PRK14042 164 AEMGCDSIAIKDM--AGLL-TPTVTVELYAGLKQAT---GLPVHLHSHSTSGLA-SICHYEAVLAGCNHIDT 228 (596)
T ss_pred HHcCCCEEEeCCc--ccCC-CHHHHHHHHHHHHhhc---CCEEEEEeCCCCCcH-HHHHHHHHHhCCCEEEe
Confidence 8899999988433 3443 3445677888888776 68876543 453 36667788899997654
|
|
| >cd04740 DHOD_1B_like Dihydroorotate dehydrogenase (DHOD) class 1B FMN-binding domain | Back alignment and domain information |
|---|
Probab=93.59 E-value=1.1 Score=41.37 Aligned_cols=91 Identities=16% Similarity=0.230 Sum_probs=63.6
Q ss_pred CCHHHHHHHHHHHHhhcCCcEEEEeecCCCC-HHHHHHHHhcCCcEEEEcc---C-----------------CC------
Q 020013 46 EAPDYLRDLIRKTRSLTERPFGVGVVLAFPH-NENIKAILSEKVAVLQVSW---G-----------------EY------ 98 (332)
Q Consensus 46 ~~~e~~~~~i~~~r~~~~~p~gvnl~~~~~~-~~~~~~~~~~~~~~I~~~~---g-----------------~~------ 98 (332)
.+++.+.+.++.+|+.++.|+.+.+-....+ .+.++.+.+.|+|.|.++. | ..
T Consensus 137 ~~~~~~~eiv~~vr~~~~~Pv~vKl~~~~~~~~~~a~~~~~~G~d~i~~~nt~~g~~~~~~~~~~~~~~~~gg~sg~~~~ 216 (296)
T cd04740 137 TDPEAVAEIVKAVKKATDVPVIVKLTPNVTDIVEIARAAEEAGADGLTLINTLKGMAIDIETRKPILGNVTGGLSGPAIK 216 (296)
T ss_pred CCHHHHHHHHHHHHhccCCCEEEEeCCCchhHHHHHHHHHHcCCCEEEEECCCcccccccccCceeecCCcceecCcccc
Confidence 4678888999999988888999886433221 2445667788999876520 0 00
Q ss_pred --cHHHHHHHHh-CCCEEEE--ecCCHHHHHHHHHcCCCEEEE
Q 020013 99 --SEELVLEAHS-AGVKVVP--QVGSFDEARKAVNAGVDAIIV 136 (332)
Q Consensus 99 --~~~~i~~~~~-~g~~v~~--~v~s~~~a~~a~~~g~D~ivv 136 (332)
..++++.+++ .+++|+. .+.+.+++.++++.|+|.|-+
T Consensus 217 ~~~~~~i~~i~~~~~ipii~~GGI~~~~da~~~l~~GAd~V~i 259 (296)
T cd04740 217 PIALRMVYQVYKAVEIPIIGVGGIASGEDALEFLMAGASAVQV 259 (296)
T ss_pred hHHHHHHHHHHHhcCCCEEEECCCCCHHHHHHHHHcCCCEEEE
Confidence 0145566655 3677774 477999999999999999987
|
DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively. |
| >PRK01130 N-acetylmannosamine-6-phosphate 2-epimerase; Provisional | Back alignment and domain information |
|---|
Probab=93.59 E-value=2.3 Score=37.53 Aligned_cols=108 Identities=21% Similarity=0.287 Sum_probs=68.6
Q ss_pred cHHHHHHHHhCCCceeecC-CCC-CCH--HHHHHHHHHHHhhcCCcEEEEeecCCCCHHHHHHHHhcCCcEEEEcc-C--
Q 020013 24 GPELVAAVANAGGLGLLRA-PDW-EAP--DYLRDLIRKTRSLTERPFGVGVVLAFPHNENIKAILSEKVAVLQVSW-G-- 96 (332)
Q Consensus 24 ~~~la~avs~aGglG~i~~-~~~-~~~--e~~~~~i~~~r~~~~~p~gvnl~~~~~~~~~~~~~~~~~~~~I~~~~-g-- 96 (332)
+.+.+..+.++|.= ++.. ... .+| +.+.+.++.+++..+.|+.+.+. ..+.+..+.+.|+|++.++. |
T Consensus 77 ~~~~v~~a~~aGad-~I~~d~~~~~~p~~~~~~~~i~~~~~~~~i~vi~~v~----t~ee~~~a~~~G~d~i~~~~~g~t 151 (221)
T PRK01130 77 TLKEVDALAAAGAD-IIALDATLRPRPDGETLAELVKRIKEYPGQLLMADCS----TLEEGLAAQKLGFDFIGTTLSGYT 151 (221)
T ss_pred CHHHHHHHHHcCCC-EEEEeCCCCCCCCCCCHHHHHHHHHhCCCCeEEEeCC----CHHHHHHHHHcCCCEEEcCCceee
Confidence 44667777788864 3321 111 123 56677778877633445554432 24556778889999986531 1
Q ss_pred -------CCcHHHHHHHHhC-CCEEEE--ecCCHHHHHHHHHcCCCEEEE
Q 020013 97 -------EYSEELVLEAHSA-GVKVVP--QVGSFDEARKAVNAGVDAIIV 136 (332)
Q Consensus 97 -------~~~~~~i~~~~~~-g~~v~~--~v~s~~~a~~a~~~g~D~ivv 136 (332)
....++++++++. +++++. .+.+.+++..+.+.|+|+|++
T Consensus 152 ~~~~~~~~~~~~~i~~i~~~~~iPvia~GGI~t~~~~~~~l~~GadgV~i 201 (221)
T PRK01130 152 EETKKPEEPDFALLKELLKAVGCPVIAEGRINTPEQAKKALELGAHAVVV 201 (221)
T ss_pred cCCCCCCCcCHHHHHHHHHhCCCCEEEECCCCCHHHHHHHHHCCCCEEEE
Confidence 1123566777654 677764 467899999999999999988
|
|
| >cd00950 DHDPS Dihydrodipicolinate synthase (DHDPS) is a key enzyme in lysine biosynthesis | Back alignment and domain information |
|---|
Probab=93.52 E-value=0.63 Score=42.84 Aligned_cols=122 Identities=15% Similarity=0.244 Sum_probs=66.6
Q ss_pred HHHHHHHcCCCEEEEecCCCCcccCCCCchhhhHHHHHHHhCCCCCcEEeecCcCCHHHHH----HHHHcCcceeeeccc
Q 020013 122 EARKAVNAGVDAIIVQGREAGGHVIGQDGLISLLPMVVDLIGDRDIPIIAAGGIVDARGYV----AALSLGAQGICLGTR 197 (332)
Q Consensus 122 ~a~~a~~~g~D~ivv~G~eaGGh~~~~~~~~~ll~~i~~~~~~~~iPviaaGGI~~~~~v~----~al~~GA~gV~~GT~ 197 (332)
.++...+.|+|+|++-|..+.++......-..++..+++.... ++||++.=|=.+.++.. .+-.+|+|+|++...
T Consensus 26 ~i~~l~~~Gv~gl~v~GstGE~~~lt~~Er~~l~~~~~~~~~~-~~~vi~gv~~~~~~~~~~~a~~a~~~G~d~v~~~~P 104 (284)
T cd00950 26 LIEFQIENGTDGLVVCGTTGESPTLSDEEHEAVIEAVVEAVNG-RVPVIAGTGSNNTAEAIELTKRAEKAGADAALVVTP 104 (284)
T ss_pred HHHHHHHcCCCEEEECCCCcchhhCCHHHHHHHHHHHHHHhCC-CCcEEeccCCccHHHHHHHHHHHHHcCCCEEEEccc
Confidence 4456678999999997765444432222235556666666643 58876433322444443 334589999999988
Q ss_pred cccCc-cCCCCHHHHHHHhcCCCceEEEEecccCCCCCCceeecChHHHhhhc
Q 020013 198 FVASE-ESYAHPEYKRKLVEMDKTEYTDVFGRARWPGAPHRVLQTPFFSNWKN 249 (332)
Q Consensus 198 fl~t~-Es~~~~~~k~~~~~~~~t~~t~~~~~~~~~g~~~R~l~n~~~~~~~~ 249 (332)
+.... +...-+-|+ .|.++.+..+ .++.. |+.....+...+.+++.+
T Consensus 105 ~~~~~~~~~l~~~~~-~ia~~~~~pi-~lYn~---P~~~g~~ls~~~~~~L~~ 152 (284)
T cd00950 105 YYNKPSQEGLYAHFK-AIAEATDLPV-ILYNV---PGRTGVNIEPETVLRLAE 152 (284)
T ss_pred ccCCCCHHHHHHHHH-HHHhcCCCCE-EEEEC---hhHhCCCCCHHHHHHHhc
Confidence 66542 212223333 3333333332 24432 444445566566665543
|
It catalyzes the aldol condensation of L-aspartate-beta- semialdehyde and pyruvate to dihydropicolinic acid via a Schiff base formation between pyruvate and a lysine residue. The functional enzyme is a homotetramer consisting of a dimer of dimers. DHDPS is member of dihydrodipicolinate synthase family that comprises several pyruvate-dependent class I aldolases that use the same catalytic step to catalyze different reactions in different pathways. |
| >TIGR03849 arch_ComA phosphosulfolactate synthase | Back alignment and domain information |
|---|
Probab=93.51 E-value=0.34 Score=43.37 Aligned_cols=96 Identities=23% Similarity=0.325 Sum_probs=62.8
Q ss_pred CHHHHHHHHHHHHhhcCCcEEE-Eeec-----CCCCHHHHHHHHhcCCcEEEEccCC---CcH---HHHHHHHhCCCEEE
Q 020013 47 APDYLRDLIRKTRSLTERPFGV-GVVL-----AFPHNENIKAILSEKVAVLQVSWGE---YSE---ELVLEAHSAGVKVV 114 (332)
Q Consensus 47 ~~e~~~~~i~~~r~~~~~p~gv-nl~~-----~~~~~~~~~~~~~~~~~~I~~~~g~---~~~---~~i~~~~~~g~~v~ 114 (332)
+.+.+++.++..++. +.++.. +.+. ....+++++.+.+.|.+.|.++-|. +.. ++++.+++.|.++.
T Consensus 39 ~~~~l~eki~la~~~-~V~v~~GGtl~E~~~~q~~~~~Yl~~~k~lGf~~IEiS~G~~~i~~~~~~rlI~~~~~~g~~v~ 117 (237)
T TIGR03849 39 DRDIVKEKIEMYKDY-GIKVYPGGTLFEIAHSKGKFDEYLNECDELGFEAVEISDGSMEISLEERCNLIERAKDNGFMVL 117 (237)
T ss_pred cHHHHHHHHHHHHHc-CCeEeCCccHHHHHHHhhhHHHHHHHHHHcCCCEEEEcCCccCCCHHHHHHHHHHHHhCCCeEe
Confidence 446677777777653 222211 1111 0112567789999999999998663 222 46777888899888
Q ss_pred EecC----------CH----HHHHHHHHcCCCEEEEecCCCCc
Q 020013 115 PQVG----------SF----DEARKAVNAGVDAIIVQGREAGG 143 (332)
Q Consensus 115 ~~v~----------s~----~~a~~a~~~g~D~ivv~G~eaGG 143 (332)
+.++ ++ +.+++.+++|+|.|++++.|+|.
T Consensus 118 ~EvG~K~~~~~~~~~~~~~i~~~~~~LeAGA~~ViiEarEsg~ 160 (237)
T TIGR03849 118 SEVGKKSPEKDSELTPDDRIKLINKDLEAGADYVIIEGRESGK 160 (237)
T ss_pred ccccccCCcccccCCHHHHHHHHHHHHHCCCcEEEEeehhcCC
Confidence 6653 22 23445589999999999999875
|
This model finds the ComA (Coenzyme M biosynthesis A) protein, phosphosulfolactate synthase, in methanogenic archaea. The ComABC pathway is one of at least two pathways to the intermediate sulfopyruvate. Coenzyme M occurs rarely and sporadically outside of the archaea, as for expoxide metabolism in Xanthobacter autotrophicus Py2, but candidate phosphosulfolactate synthases from that and other species occur fall below the cutoff and outside the scope of this model. This model deliberately is narrower in scope than pfam02679. |
| >PRK08662 nicotinate phosphoribosyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=93.51 E-value=0.5 Score=44.90 Aligned_cols=94 Identities=19% Similarity=0.260 Sum_probs=60.6
Q ss_pred HHHHHHHhC---CCEEEEecCCH----HHHHHHHHc---CCCEEEEecCCCCcccCCCCchhhhHHHHHHH---hCCCCC
Q 020013 101 ELVLEAHSA---GVKVVPQVGSF----DEARKAVNA---GVDAIIVQGREAGGHVIGQDGLISLLPMVVDL---IGDRDI 167 (332)
Q Consensus 101 ~~i~~~~~~---g~~v~~~v~s~----~~a~~a~~~---g~D~ivv~G~eaGGh~~~~~~~~~ll~~i~~~---~~~~~i 167 (332)
+.++.+++. ..++...+.+. ++|..+.+. ++|+|-++++.. . +.....++..++.. ....++
T Consensus 188 ~A~~~~~~~~p~~~~i~vevdt~~~~~~~Al~~~~~~~~~~d~I~LDn~~~---~--~g~l~~~v~~vr~~ld~~g~~~v 262 (343)
T PRK08662 188 EAWKAFDEVVPPDVPRIALVDTFKDEREEALRAAEALGDRLDGVRLDTPSS---R--RGNFRKIVREVRWTLDIRGYEHV 262 (343)
T ss_pred HHHHHHHHHCCCCCCEEEEEEeCCccHHHHHHHHHHhCCcCCEEEcCCCCC---C--CccHHHHHHHHHHHHHhcCCCCe
Confidence 345555542 34566555554 677776666 899999977531 0 11223343344332 211246
Q ss_pred cEEeecCcCCHHHHHHHHHcCcceeeeccccccC
Q 020013 168 PIIAAGGIVDARGYVAALSLGAQGICLGTRFVAS 201 (332)
Q Consensus 168 PviaaGGI~~~~~v~~al~~GA~gV~~GT~fl~t 201 (332)
.+.++||| |.+++.++... .|.+-+||.+...
T Consensus 263 ~IeaSGgI-~~~ni~~ya~~-vD~isvGs~~~~a 294 (343)
T PRK08662 263 KIFVSGGL-DPERIRELRDV-VDGFGVGTYISFA 294 (343)
T ss_pred EEEEeCCC-CHHHHHHHHHh-CCEEEcCccccCC
Confidence 79999999 99999999999 9999999987643
|
|
| >PLN02561 triosephosphate isomerase | Back alignment and domain information |
|---|
Probab=93.48 E-value=1.2 Score=40.40 Aligned_cols=120 Identities=18% Similarity=0.198 Sum_probs=67.6
Q ss_pred HHHHHHHhcCCcEEEEc-------cCCCcHH---HHHHHHhCCCEEEEecCCH--------------HHHHHHHHcCC--
Q 020013 78 ENIKAILSEKVAVLQVS-------WGEYSEE---LVLEAHSAGVKVVPQVGSF--------------DEARKAVNAGV-- 131 (332)
Q Consensus 78 ~~~~~~~~~~~~~I~~~-------~g~~~~~---~i~~~~~~g~~v~~~v~s~--------------~~a~~a~~~g~-- 131 (332)
-..+.+.+.|++++.++ |++.... -++.+.+.|+..+..++.. ++.+...+ +.
T Consensus 79 vS~~mL~d~G~~~viiGHSERR~~f~Etd~~v~~Kv~~al~~gl~pIvCvGE~~~er~~~~~~~~v~~Ql~~~l~-~v~~ 157 (253)
T PLN02561 79 ISAEMLVNLGIPWVILGHSERRALLGESNEFVGDKVAYALSQGLKVIACVGETLEQRESGSTMDVVAAQTKAIAD-KVSD 157 (253)
T ss_pred CCHHHHHHcCCCEEEECcccccCccCCChHHHHHHHHHHHHCcCEEEEEcCCCHHHHhcCCHHHHHHHHHHHHHh-cccc
Confidence 34677888999999875 3432222 2334567899888877743 22323332 22
Q ss_pred --CEEEE-ecCCCCc--ccCCCC---chhhhHHHHH-HHhC---CCCCcEEeecCcCCHHHHHHHHH-cCcceeeecccc
Q 020013 132 --DAIIV-QGREAGG--HVIGQD---GLISLLPMVV-DLIG---DRDIPIIAAGGIVDARGYVAALS-LGAQGICLGTRF 198 (332)
Q Consensus 132 --D~ivv-~G~eaGG--h~~~~~---~~~~ll~~i~-~~~~---~~~iPviaaGGI~~~~~v~~al~-~GA~gV~~GT~f 198 (332)
..+++ +...+=| ....+. .....+++.. +... ..++||+-.|+| +++++.+.+. .+.||+.+|++=
T Consensus 158 ~~~iiIAYEPvWAIGtG~~as~~~~~~v~~~Ir~~l~~~~~~~~a~~i~ILYGGSV-~~~N~~~l~~~~~iDG~LVG~AS 236 (253)
T PLN02561 158 WANVVLAYEPVWAIGTGKVATPAQAQEVHDELRKWLHKNVSPEVAATTRIIYGGSV-TGANCKELAAQPDVDGFLVGGAS 236 (253)
T ss_pred ccceEEEECCHHHhCCCCCCCHHHHHHHHHHHHHHHHHhhcccccccceEEEeCCc-CHHHHHHHhcCCCCCeEEEehHh
Confidence 23343 3333322 211111 1122233311 1111 126899999999 8899888765 689999999985
Q ss_pred c
Q 020013 199 V 199 (332)
Q Consensus 199 l 199 (332)
+
T Consensus 237 L 237 (253)
T PLN02561 237 L 237 (253)
T ss_pred h
Confidence 4
|
|
| >cd04726 KGPDC_HPS 3-Keto-L-gulonate 6-phosphate decarboxylase (KGPDC) and D-arabino-3-hexulose-6-phosphate synthase (HPS) | Back alignment and domain information |
|---|
Probab=93.46 E-value=3.6 Score=35.48 Aligned_cols=123 Identities=18% Similarity=0.164 Sum_probs=73.5
Q ss_pred ccceecCCCCCCCCcHHHHHHHHhCCCceeecCCCCCCHHHHHHHHHHHHhhcCCcEEEEeecCCCCHHHHHHHHhcCCc
Q 020013 10 EYGIVQAPLGPDISGPELVAAVANAGGLGLLRAPDWEAPDYLRDLIRKTRSLTERPFGVGVVLAFPHNENIKAILSEKVA 89 (332)
Q Consensus 10 ~~Pii~apM~~g~s~~~la~avs~aGglG~i~~~~~~~~e~~~~~i~~~r~~~~~p~gvnl~~~~~~~~~~~~~~~~~~~ 89 (332)
+.|++..-|-. -....++....++|.=.++... ..+++.+.+.++.+++. +.++++-+.......+..+ +...++|
T Consensus 53 ~~~i~~~~~v~-~~~~~~~~~~~~aGad~i~~h~-~~~~~~~~~~i~~~~~~-g~~~~v~~~~~~t~~e~~~-~~~~~~d 128 (202)
T cd04726 53 DKIIVADLKTA-DAGALEAEMAFKAGADIVTVLG-AAPLSTIKKAVKAAKKY-GKEVQVDLIGVEDPEKRAK-LLKLGVD 128 (202)
T ss_pred CCEEEEEEEec-cccHHHHHHHHhcCCCEEEEEe-eCCHHHHHHHHHHHHHc-CCeEEEEEeCCCCHHHHHH-HHHCCCC
Confidence 56888777742 1222356777788865555321 22345566777777753 4556654333332234343 7777999
Q ss_pred EEEEccC--------CCcHHHHHHHHh-CCCEEEEecC-CHHHHHHHHHcCCCEEEE
Q 020013 90 VLQVSWG--------EYSEELVLEAHS-AGVKVVPQVG-SFDEARKAVNAGVDAIIV 136 (332)
Q Consensus 90 ~I~~~~g--------~~~~~~i~~~~~-~g~~v~~~v~-s~~~a~~a~~~g~D~ivv 136 (332)
.+.++.+ ....+.++.+++ ..+++.+.-+ +.+.+..+.+.|+|++++
T Consensus 129 ~v~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~i~~~GGI~~~~i~~~~~~Gad~vvv 185 (202)
T cd04726 129 IVILHRGIDAQAAGGWWPEDDLKKVKKLLGVKVAVAGGITPDTLPEFKKAGADIVIV 185 (202)
T ss_pred EEEEcCcccccccCCCCCHHHHHHHHhhcCCCEEEECCcCHHHHHHHHhcCCCEEEE
Confidence 9876421 122355566654 4556554322 588899999999999998
|
KGPDC catalyzes the formation of L-xylulose 5-phosphate and carbon dioxide from 3-keto-L-gulonate 6-phosphate as part of the anaerobic pathway for L-ascorbate utilization in some eubacteria. HPS catalyzes the formation of D-arabino-3-hexulose-6-phosphate from D-ribulose 5-phosphate and formaldehyde in microorganisms that can use formaldehyde as a carbon source. Both catalyze reactions that involve the Mg2+-assisted formation and stabilization of 1,2-enediolate reaction intermediates. |
| >PLN02417 dihydrodipicolinate synthase | Back alignment and domain information |
|---|
Probab=93.44 E-value=0.66 Score=42.77 Aligned_cols=119 Identities=16% Similarity=0.302 Sum_probs=65.0
Q ss_pred HHHHHHHcCCCEEEEecCCCCcccCCCCchhhhHHHHHHHhCCCCCcEEeecCcCCHHHHHH----HHHcCcceeeeccc
Q 020013 122 EARKAVNAGVDAIIVQGREAGGHVIGQDGLISLLPMVVDLIGDRDIPIIAAGGIVDARGYVA----ALSLGAQGICLGTR 197 (332)
Q Consensus 122 ~a~~a~~~g~D~ivv~G~eaGGh~~~~~~~~~ll~~i~~~~~~~~iPviaaGGI~~~~~v~~----al~~GA~gV~~GT~ 197 (332)
.++...+.|+|+|++-|+.+-++......-..++..+++...+ ++||++.=|=.+.+++.+ +-++|||+|++-..
T Consensus 27 ~i~~l~~~Gv~Gi~~~GstGE~~~ls~~Er~~~~~~~~~~~~~-~~pvi~gv~~~~t~~~i~~a~~a~~~Gadav~~~~P 105 (280)
T PLN02417 27 LVNMQIENGAEGLIVGGTTGEGQLMSWDEHIMLIGHTVNCFGG-KIKVIGNTGSNSTREAIHATEQGFAVGMHAALHINP 105 (280)
T ss_pred HHHHHHHcCCCEEEECccCcchhhCCHHHHHHHHHHHHHHhCC-CCcEEEECCCccHHHHHHHHHHHHHcCCCEEEEcCC
Confidence 3455678899999996664444331112224456666666543 689886544334455433 45689999999988
Q ss_pred cccCc-cCCCCHHHHHHHhcCCCceEEEEecccCCCCCCceeecChHHHhhh
Q 020013 198 FVASE-ESYAHPEYKRKLVEMDKTEYTDVFGRARWPGAPHRVLQTPFFSNWK 248 (332)
Q Consensus 198 fl~t~-Es~~~~~~k~~~~~~~~t~~t~~~~~~~~~g~~~R~l~n~~~~~~~ 248 (332)
+.... +...-+-|+ .+.++. . ..+++. |+..+.-+.-...+++.
T Consensus 106 ~y~~~~~~~i~~~f~-~va~~~--p-i~lYn~---P~~tg~~l~~~~l~~l~ 150 (280)
T PLN02417 106 YYGKTSQEGLIKHFE-TVLDMG--P-TIIYNV---PGRTGQDIPPEVIFKIA 150 (280)
T ss_pred ccCCCCHHHHHHHHH-HHHhhC--C-EEEEEC---hhHhCcCCCHHHHHHHh
Confidence 76542 212222333 333333 2 335542 44334445555555544
|
|
| >cd04729 NanE N-acetylmannosamine-6-phosphate epimerase (NanE) converts N-acetylmannosamine-6-phosphate to N-acetylglucosamine-6-phosphate | Back alignment and domain information |
|---|
Probab=93.43 E-value=2.3 Score=37.56 Aligned_cols=108 Identities=25% Similarity=0.290 Sum_probs=68.9
Q ss_pred HHHHHHHHhCCCceeecCCC-CCCHH--HHHHHHHHHHhhcCCcEEEEeecCCCCHHHHHHHHhcCCcEEEEc-cC----
Q 020013 25 PELVAAVANAGGLGLLRAPD-WEAPD--YLRDLIRKTRSLTERPFGVGVVLAFPHNENIKAILSEKVAVLQVS-WG---- 96 (332)
Q Consensus 25 ~~la~avs~aGglG~i~~~~-~~~~e--~~~~~i~~~r~~~~~p~gvnl~~~~~~~~~~~~~~~~~~~~I~~~-~g---- 96 (332)
.+.+..+.++|.--++.... ...|+ .+.+.++++++..+.|+.+++.. .+....+.+.|++++.+. .|
T Consensus 82 ~~~~~~a~~aGad~I~~~~~~~~~p~~~~~~~~i~~~~~~g~~~iiv~v~t----~~ea~~a~~~G~d~i~~~~~g~t~~ 157 (219)
T cd04729 82 IEEVDALAAAGADIIALDATDRPRPDGETLAELIKRIHEEYNCLLMADIST----LEEALNAAKLGFDIIGTTLSGYTEE 157 (219)
T ss_pred HHHHHHHHHcCCCEEEEeCCCCCCCCCcCHHHHHHHHHHHhCCeEEEECCC----HHHHHHHHHcCCCEEEccCcccccc
Confidence 34667677788643332111 11232 66777888877655666665432 345667788899998652 12
Q ss_pred -----CCcHHHHHHHHhC-CCEEEE--ecCCHHHHHHHHHcCCCEEEE
Q 020013 97 -----EYSEELVLEAHSA-GVKVVP--QVGSFDEARKAVNAGVDAIIV 136 (332)
Q Consensus 97 -----~~~~~~i~~~~~~-g~~v~~--~v~s~~~a~~a~~~g~D~ivv 136 (332)
.+..++++.+++. +++++. .+.+.+++.++.+.|+|++++
T Consensus 158 ~~~~~~~~~~~l~~i~~~~~ipvia~GGI~~~~~~~~~l~~GadgV~v 205 (219)
T cd04729 158 TAKTEDPDFELLKELRKALGIPVIAEGRINSPEQAAKALELGADAVVV 205 (219)
T ss_pred ccCCCCCCHHHHHHHHHhcCCCEEEeCCCCCHHHHHHHHHCCCCEEEE
Confidence 1223567777653 677775 466899999999999999998
|
This reaction is part of the pathway that allows the usage of sialic acid as a carbohydrate source. Sialic acids are a family of related sugars that are found as a component of glycoproteins, gangliosides, and other sialoglycoconjugates. |
| >TIGR00559 pdxJ pyridoxine 5'-phosphate synthase | Back alignment and domain information |
|---|
Probab=93.43 E-value=4.5 Score=36.17 Aligned_cols=173 Identities=17% Similarity=0.158 Sum_probs=99.7
Q ss_pred CcHHHHHHHH-hCCCceeecCCCCCCHHHHHHHHHHHHhhcCCcEEEEeecCCCCHHHHHHHHhcCCcEEEEc-------
Q 020013 23 SGPELVAAVA-NAGGLGLLRAPDWEAPDYLRDLIRKTRSLTERPFGVGVVLAFPHNENIKAILSEKVAVLQVS------- 94 (332)
Q Consensus 23 s~~~la~avs-~aGglG~i~~~~~~~~e~~~~~i~~~r~~~~~p~gvnl~~~~~~~~~~~~~~~~~~~~I~~~------- 94 (332)
.+|--++..+ ++|.-|+..-.+-..-.--.+.+..+++....++++ =+.. .++.++.+++.+|+-|.+-
T Consensus 21 Pd~v~aA~~a~~aGAdgITvHlReDrRHI~d~Dv~~l~~~~~~~lNl--E~a~-~~emi~ia~~vkP~~vtLVPEkr~El 97 (237)
T TIGR00559 21 PDPLRAALIAEQAGADGITVHLREDRRHIQDRDVYDLKEALTTPFNI--EMAP-TEEMIRIAEEIKPEQVTLVPEARDEV 97 (237)
T ss_pred CCHHHHHHHHHHcCCCEEEecCCCCcCcCCHHHHHHHHHHcCCCEEe--ccCC-CHHHHHHHHHcCCCEEEECCCCCCCc
Confidence 4554445455 456556543221100000122345555554445544 3322 4789999999999998753
Q ss_pred ---cCCC-------cHHHHHHHHhCCCEEEEecC-CHHHHHHHHHcCCCEEEEe-cCCCCcccCCC-CchhhhHHHHHHH
Q 020013 95 ---WGEY-------SEELVLEAHSAGVKVVPQVG-SFDEARKAVNAGVDAIIVQ-GREAGGHVIGQ-DGLISLLPMVVDL 161 (332)
Q Consensus 95 ---~g~~-------~~~~i~~~~~~g~~v~~~v~-s~~~a~~a~~~g~D~ivv~-G~eaGGh~~~~-~~~~~ll~~i~~~ 161 (332)
.|.. ..++++++++.|+.|-.-+. ++++.+.+.+.|+|.|=+. |..+--+.... ..-+..+....+.
T Consensus 98 TTegGldv~~~~~~l~~~i~~l~~~gI~VSLFiDP~~~qi~~A~~~GAd~VELhTG~YA~a~~~~~~~~el~~i~~aa~~ 177 (237)
T TIGR00559 98 TTEGGLDVARLKDKLCELVKRFHAAGIEVSLFIDADKDQISAAAEVGADRIEIHTGPYANAYNKKEMAEELQRIVKASVH 177 (237)
T ss_pred cCCcCchhhhCHHHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHhCcCEEEEechhhhcCCCchhHHHHHHHHHHHHHH
Confidence 1211 23567889999999865554 6788888999999999773 43322211001 0012222222222
Q ss_pred hCCCCCcEEeecCcCCHHHHHHHHHc-C-cceeeeccccc
Q 020013 162 IGDRDIPIIAAGGIVDARGYVAALSL-G-AQGICLGTRFV 199 (332)
Q Consensus 162 ~~~~~iPviaaGGI~~~~~v~~al~~-G-A~gV~~GT~fl 199 (332)
....++-|=|.-|+ |.+|+...... + -+-|-+|-+++
T Consensus 178 A~~lGL~VnAGHgL-ny~Nv~~i~~~~~~i~EvnIGHsii 216 (237)
T TIGR00559 178 AHSLGLKVNAGHGL-NYHNVKYFAEILPYLDELNIGHAII 216 (237)
T ss_pred HHHcCCEEecCCCC-CHHhHHHHHhCCCCceEEecCHHHH
Confidence 22236889999999 89999877664 4 57777776554
|
PdxJ is required in the biosynthesis of pyridoxine (vitamin B6), a precursor to the enzyme cofactor pyridoxal phosphate. ECOCYC describes the predicted reaction equation as 1-amino-propan-2-one-3-phosphate + deoxyxylulose-5-phosphate = pyridoxine-5'-phosphate. The product of that reaction is oxidized by PdxH to pyridoxal 5'-phosphate. |
| >PRK04180 pyridoxal biosynthesis lyase PdxS; Provisional | Back alignment and domain information |
|---|
Probab=93.40 E-value=0.65 Score=42.68 Aligned_cols=80 Identities=20% Similarity=0.212 Sum_probs=55.7
Q ss_pred HHHHHHHh-CCCEEEEec--CCHHHHHHHHHcCCCEEEEecCCCCcccCCCCchhhhHHHHHHHhCCCCCcEEeecCcCC
Q 020013 101 ELVLEAHS-AGVKVVPQV--GSFDEARKAVNAGVDAIIVQGREAGGHVIGQDGLISLLPMVVDLIGDRDIPIIAAGGIVD 177 (332)
Q Consensus 101 ~~i~~~~~-~g~~v~~~v--~s~~~a~~a~~~g~D~ivv~G~eaGGh~~~~~~~~~ll~~i~~~~~~~~iPviaaGGI~~ 177 (332)
+.++.+++ ..++|+..+ ....|++..++.|+|+| ..+ .. ..+.-.++..++..+ ++|+++ |++|
T Consensus 64 ~~I~aIk~~V~iPVigk~Righ~~Ea~~L~~~GvDiI--D~T----e~--lrpad~~~~~~K~~f---~~~fma--d~~~ 130 (293)
T PRK04180 64 KMIEEIMDAVSIPVMAKARIGHFVEAQILEALGVDYI--DES----EV--LTPADEEYHIDKWDF---TVPFVC--GARN 130 (293)
T ss_pred HHHHHHHHhCCCCeEEeehhhHHHHHHHHHHcCCCEE--ecc----CC--CCchHHHHHHHHHHc---CCCEEc--cCCC
Confidence 45555554 478887654 45789999999999999 321 11 123446666776655 678765 7888
Q ss_pred HHHHHHHHHcCcceee
Q 020013 178 ARGYVAALSLGAQGIC 193 (332)
Q Consensus 178 ~~~v~~al~~GA~gV~ 193 (332)
-++...++.+|||-|-
T Consensus 131 l~EAlrai~~GadmI~ 146 (293)
T PRK04180 131 LGEALRRIAEGAAMIR 146 (293)
T ss_pred HHHHHHHHHCCCCeee
Confidence 8999999999998553
|
|
| >PRK12655 fructose-6-phosphate aldolase; Reviewed | Back alignment and domain information |
|---|
Probab=93.38 E-value=3.6 Score=36.55 Aligned_cols=136 Identities=14% Similarity=0.108 Sum_probs=81.1
Q ss_pred HHHHHhhc--CCcEEEEeecCCCCHHHHHHH---HhcCCcEEE-EccCCCcHHHHHHHHhCCCEEEEe-cCCHHHHHHHH
Q 020013 55 IRKTRSLT--ERPFGVGVVLAFPHNENIKAI---LSEKVAVLQ-VSWGEYSEELVLEAHSAGVKVVPQ-VGSFDEARKAV 127 (332)
Q Consensus 55 i~~~r~~~--~~p~gvnl~~~~~~~~~~~~~---~~~~~~~I~-~~~g~~~~~~i~~~~~~g~~v~~~-v~s~~~a~~a~ 127 (332)
++++++.. +.|+-+.++..+ .++.++.+ .+....++. +..-..--+.++.+++.|+++-.+ |-|+.++..+.
T Consensus 43 ~~~i~~~~~~~~~v~~qv~~~d-~e~mi~eA~~l~~~~~nv~IKIP~T~~Gl~Ai~~L~~~GI~vn~T~vfs~~Qa~~Aa 121 (220)
T PRK12655 43 LPRLQKAIGGEGILFAQTMSRD-AQGMVEEAKRLRNAIPGIVVKIPVTAEGLAAIKKLKKEGIPTLGTAVYSAAQGLLAA 121 (220)
T ss_pred HHHHHHHhCCCCCEEEEEeeCC-HHHHHHHHHHHHHhCCCEEEEeCCCHHHHHHHHHHHHCCCceeEeEecCHHHHHHHH
Confidence 34444442 346666665432 23333333 333444433 332111135677888899998765 67999999999
Q ss_pred HcCCCEEEE-ecC-CCCcccCCCCchhhhHHHHHHHhCCC-CCcEEeecCcCCHHHHHHHHHcCcceeeecc
Q 020013 128 NAGVDAIIV-QGR-EAGGHVIGQDGLISLLPMVVDLIGDR-DIPIIAAGGIVDARGYVAALSLGAQGICLGT 196 (332)
Q Consensus 128 ~~g~D~ivv-~G~-eaGGh~~~~~~~~~ll~~i~~~~~~~-~iPviaaGGI~~~~~v~~al~~GA~gV~~GT 196 (332)
.+|+++|-. -|+ +.-|+ ..+.++.++.+.+... .-+-|.+..+.+.+++.+++.+|+|.+-+.-
T Consensus 122 ~aGa~yIspyvgR~~~~g~-----dg~~~i~~~~~~~~~~~~~tkILaAS~r~~~~v~~~~~~G~d~vTip~ 188 (220)
T PRK12655 122 LAGAKYVAPYVNRVDAQGG-----DGIRMVQELQTLLEMHAPESMVLAASFKTPRQALDCLLAGCQSITLPL 188 (220)
T ss_pred HcCCeEEEeecchHhHcCC-----CHHHHHHHHHHHHHhcCCCcEEEEEecCCHHHHHHHHHcCCCEEECCH
Confidence 999998865 232 11121 1245566655544211 1245566678899999999999999888643
|
|
| >cd04725 OMP_decarboxylase_like Orotidine 5'-phosphate decarboxylase (ODCase) is a dimeric enzyme that decarboxylates orotidine 5'-monophosphate (OMP) to form uridine 5'-phosphate (UMP), an essential step in the pyrimidine biosynthetic pathway | Back alignment and domain information |
|---|
Probab=93.26 E-value=3 Score=36.88 Aligned_cols=133 Identities=21% Similarity=0.247 Sum_probs=76.6
Q ss_pred HHHHHHHHhhcCCcEEEEeecCCCC---HHHHHHHHhcCCcEEEEccCCCcHHHHHHH----HhCCCEEE--EecCCHH-
Q 020013 52 RDLIRKTRSLTERPFGVGVVLAFPH---NENIKAILSEKVAVLQVSWGEYSEELVLEA----HSAGVKVV--PQVGSFD- 121 (332)
Q Consensus 52 ~~~i~~~r~~~~~p~gvnl~~~~~~---~~~~~~~~~~~~~~I~~~~g~~~~~~i~~~----~~~g~~v~--~~v~s~~- 121 (332)
.+.++++++.. .++-..+-..+-. ...++.+.+.++|.+.+|. ....+.++.+ ++.+..++ ...+|..
T Consensus 39 ~~~i~~l~~~~-~~i~~DlK~~DIg~tv~~~~~~~~~~gad~~Tvh~-~~G~~~l~~~~~~~~~~~~~~~~v~~lss~~~ 116 (216)
T cd04725 39 PEIVKELRELG-FLVFLDLKLGDIPNTVAAAAEALLGLGADAVTVHP-YGGSDMLKAALEAAEEKGKGLFAVTVLSSPGA 116 (216)
T ss_pred HHHHHHHHHCC-CcEEEEeecCchHHHHHHHHHHHHhcCCCEEEECC-cCCHHHHHHHHHHHhccCCeEEEEEcCCCCCH
Confidence 34566666643 4555555443211 2334556778999999983 2234444443 33344444 3233321
Q ss_pred -H----------------HHHHHHcCCCEEEEecCCCCcccCCCCchhhhHHHHHHHhCCCCCcEEeecCcCCHH-----
Q 020013 122 -E----------------ARKAVNAGVDAIIVQGREAGGHVIGQDGLISLLPMVVDLIGDRDIPIIAAGGIVDAR----- 179 (332)
Q Consensus 122 -~----------------a~~a~~~g~D~ivv~G~eaGGh~~~~~~~~~ll~~i~~~~~~~~iPviaaGGI~~~~----- 179 (332)
+ ++.+.+.|++++++.+.+ ...+ ++... .+. .+...||+ ++
T Consensus 117 ~~~q~~~~~~~~~~~~~~~~~a~~~g~~G~V~~~~~-----------~~~i---~~~~~-~~~-~~ltPGI~-~~~~~~d 179 (216)
T cd04725 117 LDLQEGIPGSLEDLVERLAKLAREAGVDGVVCGATE-----------PEAL---RRALG-PDF-LILTPGIG-AQGSGDD 179 (216)
T ss_pred HHHHhhhcCCHHHHHHHHHHHHHHHCCCEEEECCcc-----------hHHH---HHhhC-CCC-eEEcCCcC-CCCCccc
Confidence 1 234667888888883221 1122 22221 134 48889995 45
Q ss_pred -----HHHHHHHcCcceeeeccccccCcc
Q 020013 180 -----GYVAALSLGAQGICLGTRFVASEE 203 (332)
Q Consensus 180 -----~v~~al~~GA~gV~~GT~fl~t~E 203 (332)
+..+++..|++.+.+|..++.++.
T Consensus 180 q~r~~~~~~a~~~g~~~ivvGR~I~~a~~ 208 (216)
T cd04725 180 QKRGGTPEDAIRAGADYIVVGRPITQAAD 208 (216)
T ss_pred cccccCHHHHHHcCCcEEEEChhhccCCC
Confidence 788899999999999999887754
|
In mammals, UMP synthase contains two domains: the orotate phosphoribosyltransferase (OPRTase) domain that catalyzes the transfer of phosphoribosyl 5'-pyrophosphate (PRPP) to orotate to form OMP, and the orotidine-5'-phosphate decarboxylase (ODCase) domain that decarboxylates OMP to form UMP. |
| >PRK12858 tagatose 1,6-diphosphate aldolase; Reviewed | Back alignment and domain information |
|---|
Probab=93.25 E-value=1.2 Score=42.33 Aligned_cols=117 Identities=16% Similarity=0.179 Sum_probs=67.8
Q ss_pred HHHHHhcCCcEEEEc--cCCC-cH-----------HHHHHHHhCCCEEEEec--C---------------CHH----HHH
Q 020013 80 IKAILSEKVAVLQVS--WGEY-SE-----------ELVLEAHSAGVKVVPQV--G---------------SFD----EAR 124 (332)
Q Consensus 80 ~~~~~~~~~~~I~~~--~g~~-~~-----------~~i~~~~~~g~~v~~~v--~---------------s~~----~a~ 124 (332)
++.+++.|+|+|.++ ++.. +. ++.+.+++.|++++..+ . .++ .++
T Consensus 112 ve~a~~~GAdAVk~lv~~~~d~~~~~~~~~~~~l~rv~~ec~~~giPlllE~l~y~~~~~~~~~~~~a~~~p~~V~~a~r 191 (340)
T PRK12858 112 VRRIKEAGADAVKLLLYYRPDEDDAINDRKHAFVERVGAECRANDIPFFLEPLTYDGKGSDKKAEEFAKVKPEKVIKTME 191 (340)
T ss_pred HHHHHHcCCCEEEEEEEeCCCcchHHHHHHHHHHHHHHHHHHHcCCceEEEEeccCCCccccccccccccCHHHHHHHHH
Confidence 567888999998663 3322 21 22345567899987642 1 111 233
Q ss_pred HHH--HcCCCEEEEecCCCC----cccCC-----CCchhhhHHHHHHHhCCCCCcEEe-ecCcCCHHHH----HHHHHcC
Q 020013 125 KAV--NAGVDAIIVQGREAG----GHVIG-----QDGLISLLPMVVDLIGDRDIPIIA-AGGIVDARGY----VAALSLG 188 (332)
Q Consensus 125 ~a~--~~g~D~ivv~G~eaG----Gh~~~-----~~~~~~ll~~i~~~~~~~~iPvia-aGGI~~~~~v----~~al~~G 188 (332)
.+. +.|+|.+.+.=+... |...+ .......+.++.+.. ++|+|. +||. +.+.. ..++..|
T Consensus 192 ~~~~~elGaDvlKve~p~~~~~veg~~~~~~~~~~~~~~~~f~~~~~a~---~~P~vvlsgG~-~~~~f~~~l~~A~~aG 267 (340)
T PRK12858 192 EFSKPRYGVDVLKVEVPVDMKFVEGFDGFEEAYTQEEAFKLFREQSDAT---DLPFIFLSAGV-SPELFRRTLEFACEAG 267 (340)
T ss_pred HHhhhccCCeEEEeeCCCCcccccccccccccccHHHHHHHHHHHHhhC---CCCEEEECCCC-CHHHHHHHHHHHHHcC
Confidence 445 389999998544211 11000 111124455555554 688655 7887 65654 4456689
Q ss_pred c--ceeeecccccc
Q 020013 189 A--QGICLGTRFVA 200 (332)
Q Consensus 189 A--~gV~~GT~fl~ 200 (332)
| .||.+|.....
T Consensus 268 a~f~Gvl~GRniwq 281 (340)
T PRK12858 268 ADFSGVLCGRATWQ 281 (340)
T ss_pred CCccchhhhHHHHh
Confidence 9 99999988553
|
|
| >PF00724 Oxidored_FMN: NADH:flavin oxidoreductase / NADH oxidase family; InterPro: IPR001155 The TIM-barrel fold is a closed barrel structure composed of an eight-fold repeat of beta-alpha units, where the eight parallel beta strands on the inside are covered by the eight alpha helices on the outside [] | Back alignment and domain information |
|---|
Probab=93.25 E-value=0.11 Score=49.41 Aligned_cols=48 Identities=27% Similarity=0.461 Sum_probs=40.5
Q ss_pred hhHHHHHHHhCCCCCcEEeecCcCCHHHHHHHHHcC-cceeeeccccccCcc
Q 020013 153 SLLPMVVDLIGDRDIPIIAAGGIVDARGYVAALSLG-AQGICLGTRFVASEE 203 (332)
Q Consensus 153 ~ll~~i~~~~~~~~iPviaaGGI~~~~~v~~al~~G-A~gV~~GT~fl~t~E 203 (332)
.+...+++.+ ++||++.|||.+++.+.++++-| ||.|.||..+++.++
T Consensus 281 ~~a~~ik~~~---~~pvi~~G~i~~~~~ae~~l~~g~~DlV~~gR~~ladPd 329 (341)
T PF00724_consen 281 DLAEAIKKAV---KIPVIGVGGIRTPEQAEKALEEGKADLVAMGRPLLADPD 329 (341)
T ss_dssp HHHHHHHHHH---SSEEEEESSTTHHHHHHHHHHTTSTSEEEESHHHHH-TT
T ss_pred hhhhhhhhhc---CceEEEEeeecchhhhHHHHhcCCceEeeccHHHHhCch
Confidence 4566777777 79999999999888899999877 999999999998765
|
It is a widely distributed fold which has been found in many enzyme families that catalyse completely unrelated reactions []. The active site is always found at the C-terminal end of this domain. Proteins in this entry are a variety of NADH:flavin oxidoreductase/NADH oxidase enzymes, found mostly in bacteria or fungi, that contain a TIM-barrel fold. They commonly use FMN/FAD as cofactor and include: dimethylamine dehydrogenase trimethylamine dehydrogenase 12-oxophytodienoate reductase NADPH dehydrogenase NADH oxidase ; GO: 0010181 FMN binding, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3GKA_B 3P67_A 3F03_K 2ABA_A 1VYR_A 1GVO_A 3KFT_B 3P8I_A 1GVQ_A 3P74_A .... |
| >cd02940 DHPD_FMN Dihydropyrimidine dehydrogenase (DHPD) FMN-binding domain | Back alignment and domain information |
|---|
Probab=93.25 E-value=1.1 Score=41.73 Aligned_cols=91 Identities=15% Similarity=0.196 Sum_probs=64.6
Q ss_pred CCHHHHHHHHHHHHhhcCCcEEEEeecCCCC-HHHHHHHHhcCCcEEEEcc-------------------------CC--
Q 020013 46 EAPDYLRDLIRKTRSLTERPFGVGVVLAFPH-NENIKAILSEKVAVLQVSW-------------------------GE-- 97 (332)
Q Consensus 46 ~~~e~~~~~i~~~r~~~~~p~gvnl~~~~~~-~~~~~~~~~~~~~~I~~~~-------------------------g~-- 97 (332)
.+++.+.++++.+++.++.|+.|.+-.+..+ .+.++.+.+.|++.|.++- |.
T Consensus 151 ~~~~~~~~iv~~v~~~~~~Pv~vKl~~~~~~~~~~a~~~~~~Gadgi~~~Nt~~~~~~id~~~~~~~~~~~~~~~~gg~s 230 (299)
T cd02940 151 QDPELVEEICRWVREAVKIPVIAKLTPNITDIREIARAAKEGGADGVSAINTVNSLMGVDLDGTPPAPGVEGKTTYGGYS 230 (299)
T ss_pred cCHHHHHHHHHHHHHhcCCCeEEECCCCchhHHHHHHHHHHcCCCEEEEecccccccccccccCCccccccCCCCcCccc
Confidence 4678899999999988889999987543221 3556778889999987320 00
Q ss_pred -C---c--HHHHHHHHhC---CCEEEE--ecCCHHHHHHHHHcCCCEEEE
Q 020013 98 -Y---S--EELVLEAHSA---GVKVVP--QVGSFDEARKAVNAGVDAIIV 136 (332)
Q Consensus 98 -~---~--~~~i~~~~~~---g~~v~~--~v~s~~~a~~a~~~g~D~ivv 136 (332)
+ | .+++.++++. .++|+. .+.+.+++.+.+.+|||+|-+
T Consensus 231 G~a~~p~~l~~v~~~~~~~~~~ipIig~GGI~~~~da~~~l~aGA~~V~i 280 (299)
T cd02940 231 GPAVKPIALRAVSQIARAPEPGLPISGIGGIESWEDAAEFLLLGASVVQV 280 (299)
T ss_pred CCCcchHHHHHHHHHHHhcCCCCcEEEECCCCCHHHHHHHHHcCCChheE
Confidence 0 0 2455566542 477774 478999999999999999977
|
DHPD catalyzes the first step in pyrimidine degradation: the NADPH-dependent reduction of uracil and thymine to the corresponding 5,6-dihydropyrimidines. DHPD contains two FAD, two FMN, and eight [4Fe-4S] clusters, arranged in two electron transfer chains that pass the dimer interface twice. Two of the Fe-S clusters show a hitherto unobserved coordination involving a glutamine residue. |
| >PRK00208 thiG thiazole synthase; Reviewed | Back alignment and domain information |
|---|
Probab=93.19 E-value=2.4 Score=38.12 Aligned_cols=123 Identities=16% Similarity=0.124 Sum_probs=77.9
Q ss_pred ccceecCCCCCCCCcHHHHHHHHhC----CCceee-----cCCCCCCHHHHHHHHHHHHhhcCCcEEEEeecCCCCHHHH
Q 020013 10 EYGIVQAPLGPDISGPELVAAVANA----GGLGLL-----RAPDWEAPDYLRDLIRKTRSLTERPFGVGVVLAFPHNENI 80 (332)
Q Consensus 10 ~~Pii~apM~~g~s~~~la~avs~a----GglG~i-----~~~~~~~~e~~~~~i~~~r~~~~~p~gvnl~~~~~~~~~~ 80 (332)
+|.++ |=.-|..+.+-|..+++. ++-.+| +...+.-| ++.+.+++.+.+.+.-|-+=- +-.++....
T Consensus 62 ~~~~l--pNTaG~~ta~eAv~~a~lare~~~~~~iKlEVi~d~~~llp-d~~~tv~aa~~L~~~Gf~vlp-yc~~d~~~a 137 (250)
T PRK00208 62 GVTLL--PNTAGCRTAEEAVRTARLAREALGTNWIKLEVIGDDKTLLP-DPIETLKAAEILVKEGFVVLP-YCTDDPVLA 137 (250)
T ss_pred CCEEC--CCCCCCCCHHHHHHHHHHHHHHhCCCeEEEEEecCCCCCCc-CHHHHHHHHHHHHHCCCEEEE-EeCCCHHHH
Confidence 34555 554567777777666653 443443 33222223 456778888777543343321 223345667
Q ss_pred HHHHhcCCcEEEEc-------cCCCcHHHHHHHHh-CCCEEEEe--cCCHHHHHHHHHcCCCEEEE
Q 020013 81 KAILSEKVAVLQVS-------WGEYSEELVLEAHS-AGVKVVPQ--VGSFDEARKAVNAGVDAIIV 136 (332)
Q Consensus 81 ~~~~~~~~~~I~~~-------~g~~~~~~i~~~~~-~g~~v~~~--v~s~~~a~~a~~~g~D~ivv 136 (332)
+.+.+.|+++|-.. .|...+++++.+++ .+++|+.. +++++++.++.+.|+|+|++
T Consensus 138 k~l~~~G~~~vmPlg~pIGsg~gi~~~~~i~~i~e~~~vpVIveaGI~tpeda~~AmelGAdgVlV 203 (250)
T PRK00208 138 KRLEEAGCAAVMPLGAPIGSGLGLLNPYNLRIIIEQADVPVIVDAGIGTPSDAAQAMELGADAVLL 203 (250)
T ss_pred HHHHHcCCCEeCCCCcCCCCCCCCCCHHHHHHHHHhcCCeEEEeCCCCCHHHHHHHHHcCCCEEEE
Confidence 77888899998331 12223567787776 47888854 67999999999999999998
|
|
| >PRK07188 nicotinate phosphoribosyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=93.19 E-value=0.51 Score=44.94 Aligned_cols=82 Identities=13% Similarity=0.180 Sum_probs=55.8
Q ss_pred CHHHHHHHHHc-CCCE--EEEecC-----------C--CCcccCCCCchhhhHHHHHHHhCC---CCCcEEeecCcCCHH
Q 020013 119 SFDEARKAVNA-GVDA--IIVQGR-----------E--AGGHVIGQDGLISLLPMVVDLIGD---RDIPIIAAGGIVDAR 179 (332)
Q Consensus 119 s~~~a~~a~~~-g~D~--ivv~G~-----------e--aGGh~~~~~~~~~ll~~i~~~~~~---~~iPviaaGGI~~~~ 179 (332)
+.+++..+.+. |.|. |=++-+ + .+.+. ..-....++.++++.+.. .++-|+++||| |.+
T Consensus 215 ~~~~al~~a~~~g~~l~gVRlDs~gdl~DK~~~~~~~~~~~~~-~~G~~~~l~~~vr~~Ld~~g~~~vkI~aSgGi-ne~ 292 (352)
T PRK07188 215 VITDSLKVAREFGDKLKGVRVDTSKNMIDKYFIRHPEVLGTFD-PRGVNPELIKALRKALDENGGKHVKIIVSSGF-DAK 292 (352)
T ss_pred cHHHHHHHHHHhCCCccEEEeCCcchHhhhhcccccccccccc-cccccHHHHHHHHHHHhhCCCCCcEEEEeCCC-CHH
Confidence 78888887776 8887 533211 0 00000 001235566677665532 25679999999 999
Q ss_pred HHHHHHHcC--cceeeeccccccCc
Q 020013 180 GYVAALSLG--AQGICLGTRFVASE 202 (332)
Q Consensus 180 ~v~~al~~G--A~gV~~GT~fl~t~ 202 (332)
++.++.+.| .|+.-+||.+..++
T Consensus 293 ~I~~~~~~g~piD~~GVGt~l~~~~ 317 (352)
T PRK07188 293 KIREFEAQNVPVDIYGVGSSLLKIN 317 (352)
T ss_pred HHHHHHHcCCCccEEecCcccccCc
Confidence 999999999 59999999999865
|
|
| >PRK12330 oxaloacetate decarboxylase; Provisional | Back alignment and domain information |
|---|
Probab=93.18 E-value=4.8 Score=40.21 Aligned_cols=113 Identities=12% Similarity=0.200 Sum_probs=73.2
Q ss_pred HHHHHHHHhcCCcEEEEccCCCc----HHHHHHHHhCCCEEEEe-------cCCHH----HHHHHHHcCCCEEEEecCCC
Q 020013 77 NENIKAILSEKVAVLQVSWGEYS----EELVLEAHSAGVKVVPQ-------VGSFD----EARKAVNAGVDAIIVQGREA 141 (332)
Q Consensus 77 ~~~~~~~~~~~~~~I~~~~g~~~----~~~i~~~~~~g~~v~~~-------v~s~~----~a~~a~~~g~D~ivv~G~ea 141 (332)
...++.+.++|+|++.+...... ...++.+++.|..+-.. .++++ -++.+.+.|+|.|.+.-.
T Consensus 100 ~~fv~~a~~~Gidi~RIfd~lndv~nl~~ai~~vk~ag~~~~~~i~yt~sp~~t~e~~~~~a~~l~~~Gad~I~IkDt-- 177 (499)
T PRK12330 100 DRFVEKSAENGMDVFRVFDALNDPRNLEHAMKAVKKVGKHAQGTICYTVSPIHTVEGFVEQAKRLLDMGADSICIKDM-- 177 (499)
T ss_pred HHHHHHHHHcCCCEEEEEecCChHHHHHHHHHHHHHhCCeEEEEEEEecCCCCCHHHHHHHHHHHHHcCCCEEEeCCC--
Confidence 34677888899999877532221 23456677777755222 23443 466788899999988433
Q ss_pred CcccCCCCchhhhHHHHHHHhCCCCCcEEeec----CcCCHHHHHHHHHcCcceeee
Q 020013 142 GGHVIGQDGLISLLPMVVDLIGDRDIPIIAAG----GIVDARGYVAALSLGAQGICL 194 (332)
Q Consensus 142 GGh~~~~~~~~~ll~~i~~~~~~~~iPviaaG----GI~~~~~v~~al~~GA~gV~~ 194 (332)
.|.. .+.....++..+++.++. ++||-.-. |.+ ..+..+++.+||+.|-.
T Consensus 178 aGll-~P~~~~~LV~~Lk~~~~~-~ipI~~H~Hnt~GlA-~An~laAieAGad~vDt 231 (499)
T PRK12330 178 AALL-KPQPAYDIVKGIKEACGE-DTRINLHCHSTTGVT-LVSLMKAIEAGVDVVDT 231 (499)
T ss_pred ccCC-CHHHHHHHHHHHHHhCCC-CCeEEEEeCCCCCcH-HHHHHHHHHcCCCEEEe
Confidence 3443 344557788888877631 47876654 663 46777888999997754
|
|
| >TIGR01163 rpe ribulose-phosphate 3-epimerase | Back alignment and domain information |
|---|
Probab=93.17 E-value=4.9 Score=34.80 Aligned_cols=112 Identities=14% Similarity=0.137 Sum_probs=63.9
Q ss_pred HHHHHHHhcCCcEEEEc-----c--C-CCcHHHHHHHHhC-CCEE-E-EecC-CHHHHHHHHHcCCCEEEEecCCCCccc
Q 020013 78 ENIKAILSEKVAVLQVS-----W--G-EYSEELVLEAHSA-GVKV-V-PQVG-SFDEARKAVNAGVDAIIVQGREAGGHV 145 (332)
Q Consensus 78 ~~~~~~~~~~~~~I~~~-----~--g-~~~~~~i~~~~~~-g~~v-~-~~v~-s~~~a~~a~~~g~D~ivv~G~eaGGh~ 145 (332)
+.++.+.+.|+|.|++. + + ....+.++.+++. ..++ + ..+. ..+.++.+.+.|+|+|++.+.
T Consensus 15 ~~~~~~~~~g~d~i~~~~~Dg~~~~~~~~~~~~v~~i~~~~~~~v~v~lm~~~~~~~~~~~~~~gadgv~vh~~------ 88 (210)
T TIGR01163 15 EEVKAVEEAGADWIHVDVMDGHFVPNLTFGPPVLEALRKYTDLPIDVHLMVENPDRYIEDFAEAGADIITVHPE------ 88 (210)
T ss_pred HHHHHHHHcCCCEEEEcCCCCCCCCCcccCHHHHHHHHhcCCCcEEEEeeeCCHHHHHHHHHHcCCCEEEEccC------
Confidence 45666677788888774 1 1 1233567777653 3443 2 3333 345667778999999999431
Q ss_pred CCCCchhhhHHHHHHHhCCCCCcEEeecCcCCHHHHHHHHHcCcceeeecccccc
Q 020013 146 IGQDGLISLLPMVVDLIGDRDIPIIAAGGIVDARGYVAALSLGAQGICLGTRFVA 200 (332)
Q Consensus 146 ~~~~~~~~ll~~i~~~~~~~~iPviaaGGI~~~~~v~~al~~GA~gV~~GT~fl~ 200 (332)
........++.+++. ++.++..-...+.....+.+..++|.+.+++.+..
T Consensus 89 -~~~~~~~~~~~~~~~----g~~~~~~~~~~t~~e~~~~~~~~~d~i~~~~~~~g 138 (210)
T TIGR01163 89 -ASEHIHRLLQLIKDL----GAKAGIVLNPATPLEFLEYVLPDVDLVLLMSVNPG 138 (210)
T ss_pred -CchhHHHHHHHHHHc----CCcEEEEECCCCCHHHHHHHHhhCCEEEEEEEcCC
Confidence 111223334443332 34444443444556655666678999998876543
|
This family consists of Ribulose-phosphate 3-epimerase, also known as pentose-5-phosphate 3-epimerase (PPE). PPE converts D-ribulose 5-phosphate into D-xylulose 5-phosphate in Calvin's reductive pentose phosphate cycle. It has been found in a wide range of bacteria, archebacteria, fungi and plants. |
| >PRK13305 sgbH 3-keto-L-gulonate-6-phosphate decarboxylase; Provisional | Back alignment and domain information |
|---|
Probab=93.13 E-value=0.7 Score=41.02 Aligned_cols=169 Identities=12% Similarity=0.102 Sum_probs=94.7
Q ss_pred CCcHHHHHHHHhC--CCceeecCCCCCCHHHH----HHHHHHHHhhc-CCcEEEEeecCCCCHHHHHHHHhcCCcEEEEc
Q 020013 22 ISGPELVAAVANA--GGLGLLRAPDWEAPDYL----RDLIRKTRSLT-ERPFGVGVVLAFPHNENIKAILSEKVAVLQVS 94 (332)
Q Consensus 22 ~s~~~la~avs~a--GglG~i~~~~~~~~e~~----~~~i~~~r~~~-~~p~gvnl~~~~~~~~~~~~~~~~~~~~I~~~ 94 (332)
..+.+-+..+.+. +.+.++..+ + +-+ .+.++++++.. +.++-..+-+.+-.+...+.+.+.|+|.+.++
T Consensus 12 ~~~~~~A~~l~~~l~~~v~~iKVG-~---~L~~~~G~~~i~~lk~~~~~~~IflDlKl~DIp~tv~~~~~~~Gad~~tv~ 87 (218)
T PRK13305 12 HTSLEAAQRDVTLLKDHVDIVEAG-T---ILCLNEGLGAVKALREQCPDKIIVADWKVADAGETLAQQAFGAGANWMTII 87 (218)
T ss_pred CCCHHHHHHHHHHccccCCEEEEC-H---HHHHHhCHHHHHHHHHhCCCCEEEEEeecccChHHHHHHHHHcCCCEEEEe
Confidence 4555555554432 344555443 1 111 13355665542 44555565554432334455668899877765
Q ss_pred cCCCcHHHHHHHHh----CCC----EEEEecCCHHHHHHHHHcCCCEEEEe-c---CCCCcccCCCCchhhhHHHHHHHh
Q 020013 95 WGEYSEELVLEAHS----AGV----KVVPQVGSFDEARKAVNAGVDAIIVQ-G---REAGGHVIGQDGLISLLPMVVDLI 162 (332)
Q Consensus 95 ~g~~~~~~i~~~~~----~g~----~v~~~v~s~~~a~~a~~~g~D~ivv~-G---~eaGGh~~~~~~~~~ll~~i~~~~ 162 (332)
... ..+.++.+.+ .|. .++. |.|..++....+.|++.++++ + .++|.- .+..-++.+++..
T Consensus 88 ~~~-g~~~i~~a~~~a~~~~~~~~~~llg-V~t~~~~~~l~~~g~~~~v~h~a~~a~~~G~v-----~s~~e~~~ir~~~ 160 (218)
T PRK13305 88 CAA-PLATVEKGHAVAQRCGGEIQIELFG-NWTLDDARDWHRIGVRQAIYHRGRDAQASGQQ-----WGEADLARMKALS 160 (218)
T ss_pred cCC-CHHHHHHHHHHHHhcCCcccceEEE-ecCcchHHHHHHcCCHHHHHHHHHHHHHhCCC-----CCHHHHHHHHHHh
Confidence 332 3455554433 232 3443 345556566667887755441 1 123321 1222345555554
Q ss_pred CCCCCcEEeecCcCCHHHHHHHHHcCcceeeeccccccCcc
Q 020013 163 GDRDIPIIAAGGIVDARGYVAALSLGAQGICLGTRFVASEE 203 (332)
Q Consensus 163 ~~~~iPviaaGGI~~~~~v~~al~~GA~gV~~GT~fl~t~E 203 (332)
.. +.++..+||| ++++....-..+.|-+++|+.+..++.
T Consensus 161 ~~-~~~i~VtpGI-r~~~~~~~dq~rvd~iVVGR~It~A~d 199 (218)
T PRK13305 161 DI-GLELSITGGI-TPADLPLFKDIRVKAFIAGRALAGAAN 199 (218)
T ss_pred CC-CCcEEEeCCc-CccccccccccCCCEEEECCcccCCCC
Confidence 32 5679999999 778877777789999999999987765
|
|
| >PRK05692 hydroxymethylglutaryl-CoA lyase; Provisional | Back alignment and domain information |
|---|
Probab=93.08 E-value=3.9 Score=37.85 Aligned_cols=158 Identities=16% Similarity=0.150 Sum_probs=86.9
Q ss_pred HHHHHHHHhCCCceeecCCCCCCHH------HHHHHHHHHHhhcCCcEEEEeecCCCCHHHHHHHHhcCCcEEEEccCCC
Q 020013 25 PELVAAVANAGGLGLLRAPDWEAPD------YLRDLIRKTRSLTERPFGVGVVLAFPHNENIKAILSEKVAVLQVSWGEY 98 (332)
Q Consensus 25 ~~la~avs~aGglG~i~~~~~~~~e------~~~~~i~~~r~~~~~p~gvnl~~~~~~~~~~~~~~~~~~~~I~~~~g~~ 98 (332)
.+++....++| +-.|..+++.+|. ...+.++.++...+..+. .+. +...-++.+.+.+++.|.+.....
T Consensus 29 ~~ia~~L~~~G-v~~IEvgsf~~p~~~p~~~d~~e~~~~l~~~~~~~~~--~l~--~~~~~ie~A~~~g~~~v~i~~~~s 103 (287)
T PRK05692 29 IALIDRLSAAG-LSYIEVASFVSPKWVPQMADAAEVMAGIQRRPGVTYA--ALT--PNLKGLEAALAAGADEVAVFASAS 103 (287)
T ss_pred HHHHHHHHHcC-CCEEEeCCCcCcccccccccHHHHHHhhhccCCCeEE--EEe--cCHHHHHHHHHcCCCEEEEEEecC
Confidence 45677777776 4444432222221 113444555432222222 122 235668889999999887653221
Q ss_pred -----------cH-------HHHHHHHhCCCEEEEec-----------CCHH----HHHHHHHcCCCEEEEecCCCCccc
Q 020013 99 -----------SE-------ELVLEAHSAGVKVVPQV-----------GSFD----EARKAVNAGVDAIIVQGREAGGHV 145 (332)
Q Consensus 99 -----------~~-------~~i~~~~~~g~~v~~~v-----------~s~~----~a~~a~~~g~D~ivv~G~eaGGh~ 145 (332)
.+ +.++..++.|..+...+ .+++ -++.+.+.|+|.|.+--+ .|..
T Consensus 104 ~~~~~~n~~~~~~e~l~~~~~~v~~ak~~g~~v~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~G~d~i~l~DT--~G~~ 181 (287)
T PRK05692 104 EAFSQKNINCSIAESLERFEPVAEAAKQAGVRVRGYVSCVLGCPYEGEVPPEAVADVAERLFALGCYEISLGDT--IGVG 181 (287)
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCEEEEEEEEEecCCCCCCCCHHHHHHHHHHHHHcCCcEEEeccc--cCcc
Confidence 11 24455667788774211 1333 345677899999887332 3432
Q ss_pred CCCCchhhhHHHHHHHhCCCCCcEEeec----CcCCHHHHHHHHHcCcceee
Q 020013 146 IGQDGLISLLPMVVDLIGDRDIPIIAAG----GIVDARGYVAALSLGAQGIC 193 (332)
Q Consensus 146 ~~~~~~~~ll~~i~~~~~~~~iPviaaG----GI~~~~~v~~al~~GA~gV~ 193 (332)
.+.....+++.+++.++ ++|+-.-+ |.+ -.|..+++.+|++-|-
T Consensus 182 -~P~~v~~lv~~l~~~~~--~~~i~~H~Hn~~Gla-~AN~laA~~aG~~~id 229 (287)
T PRK05692 182 -TPGQVRAVLEAVLAEFP--AERLAGHFHDTYGQA-LANIYASLEEGITVFD 229 (287)
T ss_pred -CHHHHHHHHHHHHHhCC--CCeEEEEecCCCCcH-HHHHHHHHHhCCCEEE
Confidence 33445677888877663 36765443 442 3566777888988543
|
|
| >COG0042 tRNA-dihydrouridine synthase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=93.06 E-value=1.4 Score=41.48 Aligned_cols=91 Identities=18% Similarity=0.369 Sum_probs=66.9
Q ss_pred CCHHHHHHHHHHHHhhc-CCcEEEEeecCCCC-----HHHHHHHHhcCCcEEEEcc--------CCCcHHHHHHHHhC-C
Q 020013 46 EAPDYLRDLIRKTRSLT-ERPFGVGVVLAFPH-----NENIKAILSEKVAVLQVSW--------GEYSEELVLEAHSA-G 110 (332)
Q Consensus 46 ~~~e~~~~~i~~~r~~~-~~p~gvnl~~~~~~-----~~~~~~~~~~~~~~I~~~~--------g~~~~~~i~~~~~~-g 110 (332)
.+|+.+.+.++++++.. +.|+-|.+=+...+ .+..+.+.+.|++.+++|. +...-+.+..+++. .
T Consensus 118 ~~p~lv~~iv~a~~~av~~iPVTVKiRlG~d~~~~~~~~ia~~~~~~g~~~ltVHgRtr~~~y~~~ad~~~I~~vk~~~~ 197 (323)
T COG0042 118 KNPELLAEIVKAMVEAVGDIPVTVKIRLGWDDDDILALEIARILEDAGADALTVHGRTRAQGYLGPADWDYIKELKEAVP 197 (323)
T ss_pred CCHHHHHHHHHHHHHhhCCCCeEEEEecccCcccccHHHHHHHHHhcCCCEEEEecccHHhcCCCccCHHHHHHHHHhCC
Confidence 57899999999999988 48988876443322 2456777788999999983 11123567777763 3
Q ss_pred -CEEEE--ecCCHHHHHHHHH-cCCCEEEE
Q 020013 111 -VKVVP--QVGSFDEARKAVN-AGVDAIIV 136 (332)
Q Consensus 111 -~~v~~--~v~s~~~a~~a~~-~g~D~ivv 136 (332)
++|+. .|.|.++++..++ .|+|+|.+
T Consensus 198 ~ipvi~NGdI~s~~~a~~~l~~tg~DgVMi 227 (323)
T COG0042 198 SIPVIANGDIKSLEDAKEMLEYTGADGVMI 227 (323)
T ss_pred CCeEEeCCCcCCHHHHHHHHHhhCCCEEEE
Confidence 77875 4779999998876 57999998
|
|
| >KOG2335 consensus tRNA-dihydrouridine synthase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=93.04 E-value=2.3 Score=40.22 Aligned_cols=102 Identities=18% Similarity=0.355 Sum_probs=71.8
Q ss_pred HhCCCceeecCCCCCCHHHHHHHHHHHHhhcCCcEEEEeecCCCC---HHHHHHHHhcCCcEEEEcc------C--CCcH
Q 020013 32 ANAGGLGLLRAPDWEAPDYLRDLIRKTRSLTERPFGVGVVLAFPH---NENIKAILSEKVAVLQVSW------G--EYSE 100 (332)
Q Consensus 32 s~aGglG~i~~~~~~~~e~~~~~i~~~r~~~~~p~gvnl~~~~~~---~~~~~~~~~~~~~~I~~~~------g--~~~~ 100 (332)
+..|++|..- ...++-+.+++.+++..++.|+-+.+=+.... .++.+.+.++|++.+.+|. | .+|.
T Consensus 113 a~~g~yGa~L---~~~~eLv~e~V~~v~~~l~~pVs~KIRI~~d~~kTvd~ak~~e~aG~~~ltVHGRtr~~kg~~~~pa 189 (358)
T KOG2335|consen 113 AKRGGYGAFL---MDNPELVGEMVSAVRANLNVPVSVKIRIFVDLEKTVDYAKMLEDAGVSLLTVHGRTREQKGLKTGPA 189 (358)
T ss_pred HhcCCcccee---ccCHHHHHHHHHHHHhhcCCCeEEEEEecCcHHHHHHHHHHHHhCCCcEEEEecccHHhcCCCCCCc
Confidence 3445555532 35789999999999998888877776554433 3456677889999999983 1 1222
Q ss_pred --HHHHHHHhC-C-CEEEE--ecCCHHHHHHHHH-cCCCEEEE
Q 020013 101 --ELVLEAHSA-G-VKVVP--QVGSFDEARKAVN-AGVDAIIV 136 (332)
Q Consensus 101 --~~i~~~~~~-g-~~v~~--~v~s~~~a~~a~~-~g~D~ivv 136 (332)
+.++.+++. . ++++. .+.+++++..+.+ .|+|+|.+
T Consensus 190 d~~~i~~v~~~~~~ipviaNGnI~~~~d~~~~~~~tG~dGVM~ 232 (358)
T KOG2335|consen 190 DWEAIKAVRENVPDIPVIANGNILSLEDVERCLKYTGADGVMS 232 (358)
T ss_pred CHHHHHHHHHhCcCCcEEeeCCcCcHHHHHHHHHHhCCceEEe
Confidence 445666653 3 77775 5789999998887 89999986
|
|
| >TIGR00674 dapA dihydrodipicolinate synthase | Back alignment and domain information |
|---|
Probab=93.00 E-value=0.92 Score=41.86 Aligned_cols=121 Identities=18% Similarity=0.225 Sum_probs=65.1
Q ss_pred HHHHHHHcCCCEEEEecCCCCcccCCCCchhhhHHHHHHHhCCCCCcEEeecCcCCHHHH----HHHHHcCcceeeeccc
Q 020013 122 EARKAVNAGVDAIIVQGREAGGHVIGQDGLISLLPMVVDLIGDRDIPIIAAGGIVDARGY----VAALSLGAQGICLGTR 197 (332)
Q Consensus 122 ~a~~a~~~g~D~ivv~G~eaGGh~~~~~~~~~ll~~i~~~~~~~~iPviaaGGI~~~~~v----~~al~~GA~gV~~GT~ 197 (332)
......+.|+|+|++-|..+-++......-..++..+++...+ ++||++.=|=.+.++. ..+-.+|||+|++...
T Consensus 24 ~i~~l~~~Gv~Gi~~~GstGE~~~Ls~~Er~~~~~~~~~~~~~-~~~vi~gv~~~s~~~~i~~a~~a~~~Gad~v~v~pP 102 (285)
T TIGR00674 24 LIDFQIENGTDAIVVVGTTGESPTLSHEEHKKVIEFVVDLVNG-RVPVIAGTGSNATEEAISLTKFAEDVGADGFLVVTP 102 (285)
T ss_pred HHHHHHHcCCCEEEECccCcccccCCHHHHHHHHHHHHHHhCC-CCeEEEeCCCccHHHHHHHHHHHHHcCCCEEEEcCC
Confidence 3455678899999996664444331212235556666666643 6898865443234443 2334589999999988
Q ss_pred cccCcc-CCCCHHHHHHHhcCCCceEEEEecccCCCCCCceeecChHHHhhh
Q 020013 198 FVASEE-SYAHPEYKRKLVEMDKTEYTDVFGRARWPGAPHRVLQTPFFSNWK 248 (332)
Q Consensus 198 fl~t~E-s~~~~~~k~~~~~~~~t~~t~~~~~~~~~g~~~R~l~n~~~~~~~ 248 (332)
+..... ...-+ |=+.|.++.+..+ .+++. |...+..+...+.+++.
T Consensus 103 ~y~~~~~~~i~~-~~~~i~~~~~~pi-~lYn~---P~~tg~~l~~~~l~~L~ 149 (285)
T TIGR00674 103 YYNKPTQEGLYQ-HFKAIAEEVDLPI-ILYNV---PSRTGVSLYPETVKRLA 149 (285)
T ss_pred cCCCCCHHHHHH-HHHHHHhcCCCCE-EEEEC---cHHhcCCCCHHHHHHHH
Confidence 776531 11222 2233333334332 34432 33334455555555544
|
Dihydrodipicolinate synthase is a homotetrameric enzyme of lysine biosynthesis. E. coli has several paralogs closely related to dihydrodipicoline synthase (DapA), as well as the more distant N-acetylneuraminate lyase. In Pyrococcus horikoshii, the bidirectional best hit with E. coli is to an uncharacterized paralog of DapA, not DapA itself, and it is omitted from the seed. The putative members from the Chlamydias (pathogens with a parasitic metabolism) are easily the most divergent members of the multiple alignment. |
| >PF03102 NeuB: NeuB family; InterPro: IPR013132 NeuB is the prokaryotic N-acetylneuraminic acid synthase (Neu5Ac) | Back alignment and domain information |
|---|
Probab=92.99 E-value=0.73 Score=41.53 Aligned_cols=74 Identities=18% Similarity=0.193 Sum_probs=51.5
Q ss_pred HHHHHHHhCCCEEEEecCCHHHHHHHHHcCCCEEEEecCCCCcccCCCCchhhhHHHHHHHhCCCCCcEEeecCcCCHHH
Q 020013 101 ELVLEAHSAGVKVVPQVGSFDEARKAVNAGVDAIIVQGREAGGHVIGQDGLISLLPMVVDLIGDRDIPIIAAGGIVDARG 180 (332)
Q Consensus 101 ~~i~~~~~~g~~v~~~v~s~~~a~~a~~~g~D~ivv~G~eaGGh~~~~~~~~~ll~~i~~~~~~~~iPviaaGGI~~~~~ 180 (332)
++.+.+++.|+..+.++-+.+.+..+.+.+++++.+-- +....+.||..+.+. +.|||.+-|.++-++
T Consensus 60 ~L~~~~~~~gi~f~stpfd~~s~d~l~~~~~~~~KIaS--------~dl~n~~lL~~~A~t----gkPvIlSTG~stl~E 127 (241)
T PF03102_consen 60 ELFEYCKELGIDFFSTPFDEESVDFLEELGVPAYKIAS--------GDLTNLPLLEYIAKT----GKPVILSTGMSTLEE 127 (241)
T ss_dssp HHHHHHHHTT-EEEEEE-SHHHHHHHHHHT-SEEEE-G--------GGTT-HHHHHHHHTT-----S-EEEE-TT--HHH
T ss_pred HHHHHHHHcCCEEEECCCCHHHHHHHHHcCCCEEEecc--------ccccCHHHHHHHHHh----CCcEEEECCCCCHHH
Confidence 44566778899999999999999999999999999832 223446777777662 799999999999999
Q ss_pred HHHHHH
Q 020013 181 YVAALS 186 (332)
Q Consensus 181 v~~al~ 186 (332)
+..++.
T Consensus 128 I~~Av~ 133 (241)
T PF03102_consen 128 IERAVE 133 (241)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 988876
|
It catalyses the direct formation of Neu5Ac (the most common sialic acid) by condensation of phosphoenolpyruvate (PEP) and N-acetylmannosamine (ManNAc). This reaction has only been observed in prokaryotes; eukaryotes synthesise the 9-phosphate form, Neu5Ac-9-P, and utilise ManNAc-6-P instead of ManNAc. Such eukaryotic enzymes are not present in this family []. This family also contains SpsE spore coat polysaccharide biosynthesis proteins.; GO: 0016051 carbohydrate biosynthetic process; PDB: 3G8R_B 1XUU_A 1XUZ_A 3CM4_A 2ZDR_A 1VLI_A 2WQP_A. |
| >PLN02493 probable peroxisomal (S)-2-hydroxy-acid oxidase | Back alignment and domain information |
|---|
Probab=92.99 E-value=2.2 Score=40.94 Aligned_cols=43 Identities=19% Similarity=0.314 Sum_probs=34.9
Q ss_pred chhhhHHHHHHHhCCCCCcEEeecCcCCHHHHHHHHHcCcceeeecc
Q 020013 150 GLISLLPMVVDLIGDRDIPIIAAGGIVDARGYVAALSLGAQGICLGT 196 (332)
Q Consensus 150 ~~~~ll~~i~~~~~~~~iPviaaGGI~~~~~v~~al~~GA~gV~~GT 196 (332)
.+|.-+..+++.- ++|||+ .||.+++++..+..+|+|+|++..
T Consensus 211 ~tW~di~wlr~~~---~~Piiv-KgV~~~~dA~~a~~~Gvd~I~Vsn 253 (367)
T PLN02493 211 LSWKDVQWLQTIT---KLPILV-KGVLTGEDARIAIQAGAAGIIVSN 253 (367)
T ss_pred CCHHHHHHHHhcc---CCCEEe-ecCCCHHHHHHHHHcCCCEEEECC
Confidence 4577778887765 799887 555699999999999999999853
|
|
| >cd04728 ThiG Thiazole synthase (ThiG) is the tetrameric enzyme that is involved in the formation of the thiazole moiety of thiamin pyrophosphate, an essential ubiquitous cofactor that plays an important role in carbohydrate and amino acid metabolism | Back alignment and domain information |
|---|
Probab=92.96 E-value=1.6 Score=39.23 Aligned_cols=118 Identities=18% Similarity=0.146 Sum_probs=74.8
Q ss_pred CCCCCCCcHHHHHHHHhC----CCceee-----cCCCCCCHHHHHHHHHHHHhhcCCcEEEEeecCCCCHHHHHHHHhcC
Q 020013 17 PLGPDISGPELVAAVANA----GGLGLL-----RAPDWEAPDYLRDLIRKTRSLTERPFGVGVVLAFPHNENIKAILSEK 87 (332)
Q Consensus 17 pM~~g~s~~~la~avs~a----GglG~i-----~~~~~~~~e~~~~~i~~~r~~~~~p~gvnl~~~~~~~~~~~~~~~~~ 87 (332)
|=.-|..+.+-|..+++. ++-.+| +...+.-|| ..+.++..+.+.+.-|-+=- +-.++....+.+.+.|
T Consensus 67 pNTaG~~ta~eAv~~a~lare~~~~~~iKlEVi~d~~~Llpd-~~~tv~aa~~L~~~Gf~vlp-yc~dd~~~ar~l~~~G 144 (248)
T cd04728 67 PNTAGCRTAEEAVRTARLAREALGTDWIKLEVIGDDKTLLPD-PIETLKAAEILVKEGFTVLP-YCTDDPVLAKRLEDAG 144 (248)
T ss_pred CCCCCCCCHHHHHHHHHHHHHHhCCCeEEEEEecCccccccC-HHHHHHHHHHHHHCCCEEEE-EeCCCHHHHHHHHHcC
Confidence 444466677666666543 443444 333333343 46677777776543343321 2233456677788889
Q ss_pred CcEEEEc-------cCCCcHHHHHHHHh-CCCEEEEe--cCCHHHHHHHHHcCCCEEEE
Q 020013 88 VAVLQVS-------WGEYSEELVLEAHS-AGVKVVPQ--VGSFDEARKAVNAGVDAIIV 136 (332)
Q Consensus 88 ~~~I~~~-------~g~~~~~~i~~~~~-~g~~v~~~--v~s~~~a~~a~~~g~D~ivv 136 (332)
+++|-.. .|...+++++.+++ .+++|+.. +++++++..+.+.|+|+|++
T Consensus 145 ~~~vmPlg~pIGsg~Gi~~~~~I~~I~e~~~vpVI~egGI~tpeda~~AmelGAdgVlV 203 (248)
T cd04728 145 CAAVMPLGSPIGSGQGLLNPYNLRIIIERADVPVIVDAGIGTPSDAAQAMELGADAVLL 203 (248)
T ss_pred CCEeCCCCcCCCCCCCCCCHHHHHHHHHhCCCcEEEeCCCCCHHHHHHHHHcCCCEEEE
Confidence 9998331 12224577888777 47888854 77999999999999999998
|
ThiG catalyzes the formation of thiazole from 1-deoxy-D-xylulose 5-phosphate (DXP) and dehydroglycine, with the help of the sulfur carrier protein ThiS that carries the sulfur needed for thiazole assembly on its carboxy terminus (ThiS-COSH). |
| >PLN02979 glycolate oxidase | Back alignment and domain information |
|---|
Probab=92.92 E-value=2.7 Score=40.17 Aligned_cols=44 Identities=18% Similarity=0.311 Sum_probs=35.5
Q ss_pred chhhhHHHHHHHhCCCCCcEEeecCcCCHHHHHHHHHcCcceeeeccc
Q 020013 150 GLISLLPMVVDLIGDRDIPIIAAGGIVDARGYVAALSLGAQGICLGTR 197 (332)
Q Consensus 150 ~~~~ll~~i~~~~~~~~iPviaaGGI~~~~~v~~al~~GA~gV~~GT~ 197 (332)
.+|.-++.+++.- ++|||+ .||.+++++..+..+|+|+|+++..
T Consensus 210 ltW~dl~wlr~~~---~~Pviv-KgV~~~~dA~~a~~~Gvd~I~Vsnh 253 (366)
T PLN02979 210 LSWKDVQWLQTIT---KLPILV-KGVLTGEDARIAIQAGAAGIIVSNH 253 (366)
T ss_pred CCHHHHHHHHhcc---CCCEEe-ecCCCHHHHHHHHhcCCCEEEECCC
Confidence 4577788887765 799887 5556999999999999999998543
|
|
| >COG3142 CutC Uncharacterized protein involved in copper resistance [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=92.91 E-value=2.8 Score=37.16 Aligned_cols=116 Identities=20% Similarity=0.224 Sum_probs=70.6
Q ss_pred EEEeecCCCC----HHHHHHHHhcCCcEEEEcc----CCCcHHHHHHHHh--CCCEE-EE----ecCCHHHHH-HHHHcC
Q 020013 67 GVGVVLAFPH----NENIKAILSEKVAVLQVSW----GEYSEELVLEAHS--AGVKV-VP----QVGSFDEAR-KAVNAG 130 (332)
Q Consensus 67 gvnl~~~~~~----~~~~~~~~~~~~~~I~~~~----g~~~~~~i~~~~~--~g~~v-~~----~v~s~~~a~-~a~~~g 130 (332)
+-|++++... .+.++.+.+.|++.|.++. |.-..+..+.+.+ .|..+ ++ .+.++.++. .+.+.|
T Consensus 62 gGdFvY~~~E~~iM~~DI~~~~~lG~~GVV~G~lt~dg~iD~~~le~Li~aA~gL~vTFHrAFD~~~d~~~ale~li~~G 141 (241)
T COG3142 62 GGDFVYSDDELEIMLEDIRLARELGVQGVVLGALTADGNIDMPRLEKLIEAAGGLGVTFHRAFDECPDPLEALEQLIELG 141 (241)
T ss_pred CCCcccChHHHHHHHHHHHHHHHcCCCcEEEeeecCCCccCHHHHHHHHHHccCCceeeehhhhhcCCHHHHHHHHHHCC
Confidence 4455554332 3446778889999988752 3333455555543 24443 22 244565554 567899
Q ss_pred CCEEEEecCCCCcccCCCCchhhhHHHHHHHhCCCCCcEEeecCcCCHHHHHHHH-HcCc
Q 020013 131 VDAIIVQGREAGGHVIGQDGLISLLPMVVDLIGDRDIPIIAAGGIVDARGYVAAL-SLGA 189 (332)
Q Consensus 131 ~D~ivv~G~eaGGh~~~~~~~~~ll~~i~~~~~~~~iPviaaGGI~~~~~v~~al-~~GA 189 (332)
+.-|+..| |.. .....+.++.++.+..++ .+-|++.||| +++|+.... ..|+
T Consensus 142 v~RILTsG----g~~-sa~eg~~~l~~li~~a~g-ri~Im~GaGV-~~~N~~~l~~~tg~ 194 (241)
T COG3142 142 VERILTSG----GKA-SALEGLDLLKRLIEQAKG-RIIIMAGAGV-RAENIAELVLLTGV 194 (241)
T ss_pred CcEEecCC----CcC-chhhhHHHHHHHHHHhcC-CEEEEeCCCC-CHHHHHHHHHhcCc
Confidence 99998743 332 222335666666666543 6778899999 899999874 4553
|
|
| >COG1411 Uncharacterized protein related to proFAR isomerase (HisA) [General function prediction only] | Back alignment and domain information |
|---|
Probab=92.87 E-value=0.34 Score=41.90 Aligned_cols=64 Identities=22% Similarity=0.378 Sum_probs=45.9
Q ss_pred CCCEEEEecCCCCcccCCCCchhhhHHHHHHHhCCCCCcEEeecCcCCHHHHHHHHHcCcceeeeccccc
Q 020013 130 GVDAIIVQGREAGGHVIGQDGLISLLPMVVDLIGDRDIPIIAAGGIVDARGYVAALSLGAQGICLGTRFV 199 (332)
Q Consensus 130 g~D~ivv~G~eaGGh~~~~~~~~~ll~~i~~~~~~~~iPviaaGGI~~~~~v~~al~~GA~gV~~GT~fl 199 (332)
-.+.|++.=..-|... | +..+++..+.+.. .-||+..|||.-.+++.-+..+|.+||.+||++-
T Consensus 151 ~~~lIvLDi~aVGt~~-G--~~~E~l~~~~~~s---~~pVllGGGV~g~Edlel~~~~Gv~gvLvaTalh 214 (229)
T COG1411 151 DPGLIVLDIGAVGTKS-G--PDYELLTKVLELS---EHPVLLGGGVGGMEDLELLLGMGVSGVLVATALH 214 (229)
T ss_pred CCCeEEEEcccccccc-C--CCHHHHHHHHHhc---cCceeecCCcCcHHHHHHHhcCCCceeeehhhhh
Confidence 4666666321112221 2 3466777776654 5799999999999999998899999999999853
|
|
| >COG2513 PrpB PEP phosphonomutase and related enzymes [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=92.82 E-value=0.72 Score=42.30 Aligned_cols=96 Identities=20% Similarity=0.190 Sum_probs=65.8
Q ss_pred HHHHHHHh-CCCEEEEecCCHHHHHHHHHcCCCEEEEecC---CCCcccCCCCch----hhhHHHHHHHhCCCCCcEEee
Q 020013 101 ELVLEAHS-AGVKVVPQVGSFDEARKAVNAGVDAIIVQGR---EAGGHVIGQDGL----ISLLPMVVDLIGDRDIPIIAA 172 (332)
Q Consensus 101 ~~i~~~~~-~g~~v~~~v~s~~~a~~a~~~g~D~ivv~G~---eaGGh~~~~~~~----~~ll~~i~~~~~~~~iPviaa 172 (332)
...+.+++ .++.+++.+.++-.|+.+++.|..++.+.|. .+-|+.++...+ +..+++|.+.+ ++||++.
T Consensus 8 ~~fR~l~~~~~~~~~pg~~d~~sA~la~~aGF~al~~sg~~vA~slG~pD~~~~t~~e~~~~vrrI~~a~---~lPv~vD 84 (289)
T COG2513 8 AAFRALHASGDPLVLPGAWDAGSALLAERAGFKALYLSGAGVAASLGLPDLGITTLDEVLADARRITDAV---DLPVLVD 84 (289)
T ss_pred HHHHHHHhCCCCEEecCCcCHHHHHHHHHcCCeEEEeccHHHHHhcCCCccccccHHHHHHHHHHHHhhc---CCceEEe
Confidence 34455554 4688889999999999999999999999775 233444333222 33455566655 8999965
Q ss_pred --cCcCCHHH----HHHHHHcCcceeeeccccc
Q 020013 173 --GGIVDARG----YVAALSLGAQGICLGTRFV 199 (332)
Q Consensus 173 --GGI~~~~~----v~~al~~GA~gV~~GT~fl 199 (332)
.|-+++.+ +.++..+|+.|+.+=-...
T Consensus 85 ~dtGfG~~~nvartV~~~~~aG~agi~iEDq~~ 117 (289)
T COG2513 85 IDTGFGEALNVARTVRELEQAGAAGIHIEDQVG 117 (289)
T ss_pred ccCCCCcHHHHHHHHHHHHHcCcceeeeeeccc
Confidence 57766555 4566779999998854433
|
|
| >PRK13111 trpA tryptophan synthase subunit alpha; Provisional | Back alignment and domain information |
|---|
Probab=92.80 E-value=4.4 Score=36.93 Aligned_cols=121 Identities=21% Similarity=0.168 Sum_probs=79.4
Q ss_pred CccceecCCCCCCC-----CcHHHHHHHHhCCCceeecCCCCCCHHHHHHHHHHHHhhcCCcEEEEeecCCCCHHHHHHH
Q 020013 9 FEYGIVQAPLGPDI-----SGPELVAAVANAGGLGLLRAPDWEAPDYLRDLIRKTRSLTERPFGVGVVLAFPHNENIKAI 83 (332)
Q Consensus 9 ~~~Pii~apM~~g~-----s~~~la~avs~aGglG~i~~~~~~~~e~~~~~i~~~r~~~~~p~gvnl~~~~~~~~~~~~~ 83 (332)
.+.|++ =|+..- .-..+...++++|.-|+|-. . .++|+.++.+..+++.. .--|-++.+....+.++.+
T Consensus 88 ~~~p~v--lm~Y~N~i~~~G~e~f~~~~~~aGvdGviip-D-Lp~ee~~~~~~~~~~~g--l~~I~lvap~t~~eri~~i 161 (258)
T PRK13111 88 PTIPIV--LMTYYNPIFQYGVERFAADAAEAGVDGLIIP-D-LPPEEAEELRAAAKKHG--LDLIFLVAPTTTDERLKKI 161 (258)
T ss_pred CCCCEE--EEecccHHhhcCHHHHHHHHHHcCCcEEEEC-C-CCHHHHHHHHHHHHHcC--CcEEEEeCCCCCHHHHHHH
Confidence 345866 454211 23468889999999999975 3 57888888888877642 1223333343346778877
Q ss_pred HhcCCcEEEE-c-cC---C------CcHHHHHHHHhC-CCEEEE--ecCCHHHHHHHHHcCCCEEEE
Q 020013 84 LSEKVAVLQV-S-WG---E------YSEELVLEAHSA-GVKVVP--QVGSFDEARKAVNAGVDAIIV 136 (332)
Q Consensus 84 ~~~~~~~I~~-~-~g---~------~~~~~i~~~~~~-g~~v~~--~v~s~~~a~~a~~~g~D~ivv 136 (332)
.+....+|.. + .| . ...+.++++++. +++++. .+.+.+++..+.+. +|++++
T Consensus 162 ~~~s~gfIY~vs~~GvTG~~~~~~~~~~~~i~~vk~~~~~pv~vGfGI~~~e~v~~~~~~-ADGviV 227 (258)
T PRK13111 162 ASHASGFVYYVSRAGVTGARSADAADLAELVARLKAHTDLPVAVGFGISTPEQAAAIAAV-ADGVIV 227 (258)
T ss_pred HHhCCCcEEEEeCCCCCCcccCCCccHHHHHHHHHhcCCCcEEEEcccCCHHHHHHHHHh-CCEEEE
Confidence 7777777643 1 11 1 123577888774 666664 46799999998875 999998
|
|
| >PRK09282 pyruvate carboxylase subunit B; Validated | Back alignment and domain information |
|---|
Probab=92.76 E-value=4.6 Score=41.34 Aligned_cols=112 Identities=15% Similarity=0.257 Sum_probs=73.1
Q ss_pred HHHHHHHHhcCCcEEEEccCCC-cH---HHHHHHHhCCCEEEEec-------CCH----HHHHHHHHcCCCEEEEecCCC
Q 020013 77 NENIKAILSEKVAVLQVSWGEY-SE---ELVLEAHSAGVKVVPQV-------GSF----DEARKAVNAGVDAIIVQGREA 141 (332)
Q Consensus 77 ~~~~~~~~~~~~~~I~~~~g~~-~~---~~i~~~~~~g~~v~~~v-------~s~----~~a~~a~~~g~D~ivv~G~ea 141 (332)
...++.+.++|++.|.+..... .. ..++.+++.|..+-..+ .++ +.++.+.+.|+|.|.+.-.
T Consensus 99 ~~~v~~A~~~Gvd~irif~~lnd~~n~~~~i~~ak~~G~~v~~~i~~t~~p~~t~~~~~~~a~~l~~~Gad~I~i~Dt-- 176 (592)
T PRK09282 99 EKFVEKAAENGIDIFRIFDALNDVRNMEVAIKAAKKAGAHVQGTISYTTSPVHTIEKYVELAKELEEMGCDSICIKDM-- 176 (592)
T ss_pred HHHHHHHHHCCCCEEEEEEecChHHHHHHHHHHHHHcCCEEEEEEEeccCCCCCHHHHHHHHHHHHHcCCCEEEECCc--
Confidence 3457788899999987753221 22 34566677887765332 122 3466778899999988433
Q ss_pred CcccCCCCchhhhHHHHHHHhCCCCCcEEe----ecCcCCHHHHHHHHHcCcceeeec
Q 020013 142 GGHVIGQDGLISLLPMVVDLIGDRDIPIIA----AGGIVDARGYVAALSLGAQGICLG 195 (332)
Q Consensus 142 GGh~~~~~~~~~ll~~i~~~~~~~~iPvia----aGGI~~~~~v~~al~~GA~gV~~G 195 (332)
-|.. .+.....++..+++.+ ++||-. ..|.+ ..+..+|+.+||+.|...
T Consensus 177 ~G~~-~P~~~~~lv~~lk~~~---~~pi~~H~Hnt~Gla-~An~laAv~aGad~vD~a 229 (592)
T PRK09282 177 AGLL-TPYAAYELVKALKEEV---DLPVQLHSHCTSGLA-PMTYLKAVEAGVDIIDTA 229 (592)
T ss_pred CCCc-CHHHHHHHHHHHHHhC---CCeEEEEEcCCCCcH-HHHHHHHHHhCCCEEEee
Confidence 2332 2334567788887766 577765 56673 567778889999987653
|
|
| >PRK12376 putative translaldolase; Provisional | Back alignment and domain information |
|---|
Probab=92.68 E-value=7.3 Score=35.00 Aligned_cols=136 Identities=15% Similarity=0.156 Sum_probs=80.4
Q ss_pred HHHHHHHhhc-CCcEEEEeecCCCCHHHHHH---HHhcCCcEEE-EccCC----CcHHHHHHHHhCCCEEEEe-cCCHHH
Q 020013 53 DLIRKTRSLT-ERPFGVGVVLAFPHNENIKA---ILSEKVAVLQ-VSWGE----YSEELVLEAHSAGVKVVPQ-VGSFDE 122 (332)
Q Consensus 53 ~~i~~~r~~~-~~p~gvnl~~~~~~~~~~~~---~~~~~~~~I~-~~~g~----~~~~~i~~~~~~g~~v~~~-v~s~~~ 122 (332)
+.++++++.. +.|+.+-++.... ++.++. +.+.+..++. +..-. .--+.++.+.+.|+++-.+ |-|+.+
T Consensus 47 ~~~~~i~~~~~~~~vs~EV~~~d~-~~mv~eA~~l~~~~~nv~VKIP~T~~~G~~gl~Ai~~L~~~GI~vn~T~vfs~~Q 125 (236)
T PRK12376 47 AFAKEVLAEIPDAPISFEVFADDL-ETMEKEAEKIASLGENVYVKIPITNTKGESTIPLIKKLSADGVKLNVTAIFTIEQ 125 (236)
T ss_pred HHHHHHHHhcCCCcEEEEEecCCH-HHHHHHHHHHHHhCCCeEEEECCcCccchhHHHHHHHHHHCCCeEEEeeecCHHH
Confidence 3445555554 4577777754332 334333 3334555543 34211 1135678888899998654 668888
Q ss_pred HHHHHHc----CCCEEEE-ecCC-CCcccCCCCchhhhHHHHHHHhCC-CCCcEEeecCcCCHHHHHHHHHcCcceeeec
Q 020013 123 ARKAVNA----GVDAIIV-QGRE-AGGHVIGQDGLISLLPMVVDLIGD-RDIPIIAAGGIVDARGYVAALSLGAQGICLG 195 (332)
Q Consensus 123 a~~a~~~----g~D~ivv-~G~e-aGGh~~~~~~~~~ll~~i~~~~~~-~~iPviaaGGI~~~~~v~~al~~GA~gV~~G 195 (332)
+..+.++ |+++|-. -|+- --|. ..+.++.++.+.+.. .++ =|.+.-|.+..++.+++.+|||.+-+.
T Consensus 126 a~~a~~A~ag~ga~yispfvgR~dd~g~-----D~~~~i~~i~~i~~~~~~t-kILaASiR~~~~v~~a~~~Gad~vTvp 199 (236)
T PRK12376 126 VKEVVDALTPGVPAIVSVFAGRIADTGV-----DPVPLMKEALAICHSKPGV-ELLWASPREVYNIIQADQLGCDIITVT 199 (236)
T ss_pred HHHHHHHhcCCCCeEEEEecchhhhcCC-----CcHHHHHHHHHHHHhCCCc-EEEEEecCCHHHHHHHHHcCCCEEEcC
Confidence 8754443 5888865 3431 1111 225556666555432 133 445567999999999999999998863
|
|
| >TIGR03128 RuMP_HxlA 3-hexulose-6-phosphate synthase | Back alignment and domain information |
|---|
Probab=92.68 E-value=3.1 Score=36.13 Aligned_cols=104 Identities=21% Similarity=0.201 Sum_probs=61.2
Q ss_pred hcCCcEEEEcc---CCCcHHHHHHHHhC--CCEEEEec--CCHH--HHHHHHHcCCCEEEEecCCCCcccCCCCchhhhH
Q 020013 85 SEKVAVLQVSW---GEYSEELVLEAHSA--GVKVVPQV--GSFD--EARKAVNAGVDAIIVQGREAGGHVIGQDGLISLL 155 (332)
Q Consensus 85 ~~~~~~I~~~~---g~~~~~~i~~~~~~--g~~v~~~v--~s~~--~a~~a~~~g~D~ivv~G~eaGGh~~~~~~~~~ll 155 (332)
+.++++|.+.. .....+.++.+++. +..++... .++. +++.+.++|+|+|++.+. ++. .....++
T Consensus 22 ~~~v~~iev~~~l~~~~g~~~i~~l~~~~~~~~i~~d~k~~d~~~~~~~~~~~~Gad~i~vh~~-~~~-----~~~~~~i 95 (206)
T TIGR03128 22 ADYVDIIEIGTPLIKNEGIEAVKEMKEAFPDRKVLADLKTMDAGEYEAEQAFAAGADIVTVLGV-ADD-----ATIKGAV 95 (206)
T ss_pred ccCeeEEEeCCHHHHHhCHHHHHHHHHHCCCCEEEEEEeeccchHHHHHHHHHcCCCEEEEecc-CCH-----HHHHHHH
Confidence 55677776631 11123567777664 44555443 2443 588889999999998643 111 1123344
Q ss_pred HHHHHHhCCCCCcEEee-cCcCCH-HHHHHHHHcCcceeeecccc
Q 020013 156 PMVVDLIGDRDIPIIAA-GGIVDA-RGYVAALSLGAQGICLGTRF 198 (332)
Q Consensus 156 ~~i~~~~~~~~iPviaa-GGI~~~-~~v~~al~~GA~gV~~GT~f 198 (332)
..+.+ . +++++++ -+..+. +.+..+..+|+|-|.+.+.|
T Consensus 96 ~~~~~-~---g~~~~~~~~~~~t~~~~~~~~~~~g~d~v~~~pg~ 136 (206)
T TIGR03128 96 KAAKK-H---GKEVQVDLINVKDKVKRAKELKELGADYIGVHTGL 136 (206)
T ss_pred HHHHH-c---CCEEEEEecCCCChHHHHHHHHHcCCCEEEEcCCc
Confidence 44433 2 6888775 344443 67777888899988775433
|
at the cost of also yielding formaldehyde. These latter species tend usually have a formaldehyde-activating enzyme to attach formaldehyde to the C1 carrier tetrahydromethanopterin. In these species, the enzyme is viewed as a lyase rather than a synthase and is called D-arabino 3-hexulose 6-phosphate formaldehyde lyase. Note that there is some overlap in specificity with the Escherichia coli enzyme 3-keto-L-gulonate 6-phosphate decarboxylase. |
| >PLN02411 12-oxophytodienoate reductase | Back alignment and domain information |
|---|
Probab=92.66 E-value=0.18 Score=48.79 Aligned_cols=46 Identities=17% Similarity=0.302 Sum_probs=39.6
Q ss_pred hHHHHHHHhCCCCCcEEeecCcCCHHHHHHHHHcC-cceeeeccccccCcc
Q 020013 154 LLPMVVDLIGDRDIPIIAAGGIVDARGYVAALSLG-AQGICLGTRFVASEE 203 (332)
Q Consensus 154 ll~~i~~~~~~~~iPviaaGGI~~~~~v~~al~~G-A~gV~~GT~fl~t~E 203 (332)
+..++++.+ ++||+++||| +++.+.++++.| ||.|.+|..|++.++
T Consensus 304 ~a~~ik~~v---~~pvi~~G~i-~~~~a~~~l~~g~aDlV~~gR~~iadPd 350 (391)
T PLN02411 304 LMRTLRRAY---QGTFMCSGGF-TRELGMQAVQQGDADLVSYGRLFISNPD 350 (391)
T ss_pred HHHHHHHHc---CCCEEEECCC-CHHHHHHHHHcCCCCEEEECHHHHhCcc
Confidence 446677776 7899999999 789999999988 899999999998765
|
|
| >cd02071 MM_CoA_mut_B12_BD methylmalonyl CoA mutase B12 binding domain | Back alignment and domain information |
|---|
Probab=92.63 E-value=1.4 Score=35.13 Aligned_cols=80 Identities=25% Similarity=0.415 Sum_probs=46.9
Q ss_pred HHHhCCCEEEEe--cCCHHH-HHHHHHcCCCEEEEecCCCCcccCCCCchhhhHHHHHHHhCC---CCCcEEeecCcCCH
Q 020013 105 EAHSAGVKVVPQ--VGSFDE-ARKAVNAGVDAIIVQGREAGGHVIGQDGLISLLPMVVDLIGD---RDIPIIAAGGIVDA 178 (332)
Q Consensus 105 ~~~~~g~~v~~~--v~s~~~-a~~a~~~g~D~ivv~G~eaGGh~~~~~~~~~ll~~i~~~~~~---~~iPviaaGGI~~~ 178 (332)
.++..|..++.. -.+.++ ...+.+.++|+|++.... ......++++.+.++. .++++++.|.+ ..
T Consensus 22 ~l~~~G~~vi~lG~~vp~e~~~~~a~~~~~d~V~iS~~~--------~~~~~~~~~~~~~L~~~~~~~i~i~~GG~~-~~ 92 (122)
T cd02071 22 ALRDAGFEVIYTGLRQTPEEIVEAAIQEDVDVIGLSSLS--------GGHMTLFPEVIELLRELGAGDILVVGGGII-PP 92 (122)
T ss_pred HHHHCCCEEEECCCCCCHHHHHHHHHHcCCCEEEEcccc--------hhhHHHHHHHHHHHHhcCCCCCEEEEECCC-CH
Confidence 356667776632 223344 455678899999985432 1122333444333321 14566665555 56
Q ss_pred HHHHHHHHcCcceee
Q 020013 179 RGYVAALSLGAQGIC 193 (332)
Q Consensus 179 ~~v~~al~~GA~gV~ 193 (332)
++..++.++|.|++.
T Consensus 93 ~~~~~~~~~G~d~~~ 107 (122)
T cd02071 93 EDYELLKEMGVAEIF 107 (122)
T ss_pred HHHHHHHHCCCCEEE
Confidence 778889999998775
|
This domain binds to B12 (adenosylcobamide), which initiates the conversion of succinyl CoA and methylmalonyl CoA by forming an adenosyl radical, which then undergoes a rearrangement exchanging a hydrogen atom with a group attached to a neighboring carbon atom. This family is present in both mammals and bacteria. Bacterial members are heterodimers and involved in the fermentation of pyruvate to propionate. Mammalian members are homodimers and responsible for the conversion of odd-chain fatty acids and branched-chain amino acids via propionyl CoA to succinyl CoA for further degradation. |
| >PRK05437 isopentenyl pyrophosphate isomerase; Provisional | Back alignment and domain information |
|---|
Probab=92.56 E-value=2.8 Score=39.97 Aligned_cols=89 Identities=22% Similarity=0.138 Sum_probs=58.4
Q ss_pred HHHHHHHHHHHHhhcCCcEEEEeecCCCCHHHHHHHHhcCCcEEEEcc-CC-------------------------CcHH
Q 020013 48 PDYLRDLIRKTRSLTERPFGVGVVLAFPHNENIKAILSEKVAVLQVSW-GE-------------------------YSEE 101 (332)
Q Consensus 48 ~e~~~~~i~~~r~~~~~p~gvnl~~~~~~~~~~~~~~~~~~~~I~~~~-g~-------------------------~~~~ 101 (332)
.+.+.+.++.+++..+.|+.+.........+.++.+.+.|+|+|.++. |. +...
T Consensus 171 f~~~le~i~~i~~~~~vPVivK~~g~g~s~~~a~~l~~~Gvd~I~Vsg~GGt~~~~ie~~R~~~~~~~~~~~~~g~pt~~ 250 (352)
T PRK05437 171 FRGWLDNIAEIVSALPVPVIVKEVGFGISKETAKRLADAGVKAIDVAGAGGTSWAAIENYRARDDRLASYFADWGIPTAQ 250 (352)
T ss_pred HHHHHHHHHHHHHhhCCCEEEEeCCCCCcHHHHHHHHHcCCCEEEECCCCCCCccchhhhhhhccccccccccccCCHHH
Confidence 333457778888777889998766432235667778889999998852 11 0011
Q ss_pred HHHHHHhC--CCEEEE--ecCCHHHHHHHHHcCCCEEEE
Q 020013 102 LVLEAHSA--GVKVVP--QVGSFDEARKAVNAGVDAIIV 136 (332)
Q Consensus 102 ~i~~~~~~--g~~v~~--~v~s~~~a~~a~~~g~D~ivv 136 (332)
.+..+++. +++|+. .+.+..++.+++..|+|++-+
T Consensus 251 ~l~~i~~~~~~ipvia~GGI~~~~dv~k~l~~GAd~v~i 289 (352)
T PRK05437 251 SLLEARSLLPDLPIIASGGIRNGLDIAKALALGADAVGM 289 (352)
T ss_pred HHHHHHHhcCCCeEEEECCCCCHHHHHHHHHcCCCEEEE
Confidence 22223332 567764 367888888888899998876
|
|
| >PRK15492 triosephosphate isomerase; Provisional | Back alignment and domain information |
|---|
Probab=92.55 E-value=1.1 Score=40.91 Aligned_cols=120 Identities=18% Similarity=0.247 Sum_probs=70.1
Q ss_pred HHHHHHHhcCCcEEEEc-------cCCCcHH----HHHHHHhCCCEEEEecCCHHHHHHH--------------H-HcCC
Q 020013 78 ENIKAILSEKVAVLQVS-------WGEYSEE----LVLEAHSAGVKVVPQVGSFDEARKA--------------V-NAGV 131 (332)
Q Consensus 78 ~~~~~~~~~~~~~I~~~-------~g~~~~~----~i~~~~~~g~~v~~~v~s~~~a~~a--------------~-~~g~ 131 (332)
-....+.+.|++.+.++ |++ ..+ -++.+.+.|+..+..++...+.+.+ + ...+
T Consensus 85 vSa~mLkd~G~~~viiGHSERR~~f~E-td~~v~~Kv~~a~~~gl~pIvCiGE~~e~r~~g~~~~v~~~Ql~~~l~~~~~ 163 (260)
T PRK15492 85 ISPLMLKEIGTQLVMIGHSERRHKFGE-TDQEENAKVLAALKHDFTTLLCVGETLEQKNYGISDEILRTQLKIGLHGINP 163 (260)
T ss_pred CCHHHHHHcCCCEEEECccccccccCc-chHHHHHHHHHHHHCCCEEEEEcCCcHHHHHcCCHHHHHHHHHHHHHhcCCH
Confidence 34667888999999875 343 233 2345567899888888754332221 1 1122
Q ss_pred ----CEEEE-ecCCC---CcccCCCC---chhhhHHHH-HHHhC--CCCCcEEeecCcCCHHHHHHHHHc-Ccceeeecc
Q 020013 132 ----DAIIV-QGREA---GGHVIGQD---GLISLLPMV-VDLIG--DRDIPIIAAGGIVDARGYVAALSL-GAQGICLGT 196 (332)
Q Consensus 132 ----D~ivv-~G~ea---GGh~~~~~---~~~~ll~~i-~~~~~--~~~iPviaaGGI~~~~~v~~al~~-GA~gV~~GT 196 (332)
+.|++ +...+ ||....+. .....+++. .+.+. ..+++|+-.|+| +++|+.+.+.. ..||+.+|.
T Consensus 164 ~~~~~iiIAYEPvWAIGtgg~~as~e~~~~~~~~Ir~~l~~~~~~~~~~irILYGGSV-~~~N~~~l~~~~diDG~LvG~ 242 (260)
T PRK15492 164 DQLAKLRIAYEPVWAIGEAGIPASADYADEKHAVIKQCLIELFGDAGDDIPVFYGGSV-NAENANELFGQPHIDGLFIGR 242 (260)
T ss_pred hhcCceEEEECChHHhCCCCCCCCHHHHHHHHHHHHHHHHHHhccccCceeEEEcCcc-CHHHHHHHhcCCCCCEEEeeh
Confidence 23443 33333 23321110 123334432 22221 126899999999 89999999875 589999998
Q ss_pred ccc
Q 020013 197 RFV 199 (332)
Q Consensus 197 ~fl 199 (332)
+-+
T Consensus 243 aSl 245 (260)
T PRK15492 243 SAW 245 (260)
T ss_pred hhc
Confidence 844
|
|
| >PF00072 Response_reg: Response regulator receiver domain; InterPro: IPR001789 Two-component signal transduction systems enable bacteria to sense, respond, and adapt to a wide range of environments, stressors, and growth conditions [] | Back alignment and domain information |
|---|
Probab=92.46 E-value=3.1 Score=31.52 Aligned_cols=83 Identities=24% Similarity=0.197 Sum_probs=62.0
Q ss_pred HHHHhCCCEEEEecCCHHHHHHHH-HcCCCEEEEecCCCCcccCCCCchhhhHHHHHHHhCCCCCcEEeecCcCCHHHHH
Q 020013 104 LEAHSAGVKVVPQVGSFDEARKAV-NAGVDAIIVQGREAGGHVIGQDGLISLLPMVVDLIGDRDIPIIAAGGIVDARGYV 182 (332)
Q Consensus 104 ~~~~~~g~~v~~~v~s~~~a~~a~-~~g~D~ivv~G~eaGGh~~~~~~~~~ll~~i~~~~~~~~iPviaaGGI~~~~~v~ 182 (332)
+.++..|...+..+.+.+++.... ...+|.+++.-.-.+ .....++.+++.... ++|+|+-+.=.+.....
T Consensus 16 ~~l~~~~~~~v~~~~~~~~~~~~~~~~~~d~iiid~~~~~------~~~~~~~~~i~~~~~--~~~ii~~t~~~~~~~~~ 87 (112)
T PF00072_consen 16 KLLERAGYEEVTTASSGEEALELLKKHPPDLIIIDLELPD------GDGLELLEQIRQINP--SIPIIVVTDEDDSDEVQ 87 (112)
T ss_dssp HHHHHTTEEEEEEESSHHHHHHHHHHSTESEEEEESSSSS------SBHHHHHHHHHHHTT--TSEEEEEESSTSHHHHH
T ss_pred HHHHhCCCCEEEEECCHHHHHHHhcccCceEEEEEeeecc------ccccccccccccccc--cccEEEecCCCCHHHHH
Confidence 445567886666788888877654 567999999643222 244677788776552 79999999888999999
Q ss_pred HHHHcCcceeee
Q 020013 183 AALSLGAQGICL 194 (332)
Q Consensus 183 ~al~~GA~gV~~ 194 (332)
+++.+|++++..
T Consensus 88 ~~~~~g~~~~l~ 99 (112)
T PF00072_consen 88 EALRAGADDYLS 99 (112)
T ss_dssp HHHHTTESEEEE
T ss_pred HHHHCCCCEEEE
Confidence 999999998875
|
Some bacteria can contain up to as many as 200 two-component systems that need tight regulation to prevent unwanted cross-talk []. These pathways have been adapted to response to a wide variety of stimuli, including nutrients, cellular redox state, changes in osmolarity, quorum signals, antibiotics, and more []. Two-component systems are comprised of a sensor histidine kinase (HK) and its cognate response regulator (RR) []. The HK catalyses its own auto-phosphorylation followed by the transfer of the phosphoryl group to the receiver domain on RR; phosphorylation of the RR usually activates an attached output domain, which can then effect changes in cellular physiology, often by regulating gene expression. Some HK are bifunctional, catalysing both the phosphorylation and dephosphorylation of their cognate RR. The input stimuli can regulate either the kinase or phosphatase activity of the bifunctional HK. A variant of the two-component system is the phospho-relay system. Here a hybrid HK auto-phosphorylates and then transfers the phosphoryl group to an internal receiver domain, rather than to a separate RR protein. The phosphoryl group is then shuttled to histidine phosphotransferase (HPT) and subsequently to a terminal RR, which can evoke the desired response [, ]. Bipartite response regulator proteins are involved in a two-component signal transduction system in bacteria, and certain eukaryotes like protozoa, that functions to detect and respond to environmental changes []. These systems have been detected during host invasion, drug resistance, motility, phosphate uptake, osmoregulation, and nitrogen fixation, amongst others []. The two-component system consists of a histidine protein kinase environmental sensor that phosphorylates the receiver domain of a response regulator protein; phosphorylation induces a conformational change in the response regulator, which activates the effector domain, triggering the cellular response []. The domains of the two-component proteins are highly modular, but the core structures and activities are maintained. The response regulators act as phosphorylation-activated switches to affect a cellular response, usually by transcriptional regulation. Most of these proteins consist of two domains, an N-terminal response regulator receiver domain, and a variable C-terminal effector domain with DNA-binding activity. This entry represents the response regulator receiver domain, which belongs to the CheY family, and receives the signal from the sensor partner in the two-component system.; GO: 0000156 two-component response regulator activity, 0000160 two-component signal transduction system (phosphorelay), 0006355 regulation of transcription, DNA-dependent; PDB: 2QR3_A 2QXY_A 1I3C_A 1JLK_A 2PKX_A 2PL1_A 3H1F_A 3H1E_A 3GWG_A 3H1G_A .... |
| >TIGR03239 GarL 2-dehydro-3-deoxyglucarate aldolase | Back alignment and domain information |
|---|
Probab=92.45 E-value=8.1 Score=34.98 Aligned_cols=185 Identities=15% Similarity=0.093 Sum_probs=102.0
Q ss_pred chhhcCCccceecCCCCCCCCcHHHHHHHHhCCCceeecC--C-CCCCHHHHHHHHHHHHhhcCCcEEEEeecCCCCHHH
Q 020013 3 WRGMLGFEYGIVQAPLGPDISGPELVAAVANAGGLGLLRA--P-DWEAPDYLRDLIRKTRSLTERPFGVGVVLAFPHNEN 79 (332)
Q Consensus 3 ~~~~l~~~~Pii~apM~~g~s~~~la~avs~aGglG~i~~--~-~~~~~e~~~~~i~~~r~~~~~p~gvnl~~~~~~~~~ 79 (332)
|.+.|.-.-|++..-+ ...+|..+..++.+| +.++.. . +..+.+.+...+..++.. ..+--|-+ +.++...
T Consensus 3 lk~~l~~g~~~~G~~~--~~~sp~~~e~~a~~G-~D~v~iD~EHg~~~~~~~~~~~~a~~~~-g~~~~VRv--p~~~~~~ 76 (249)
T TIGR03239 3 FRQDLLARETLIGCWS--ALGNPITTEVLGLAG-FDWLLLDGEHAPNDVLTFIPQLMALKGS-ASAPVVRP--PWNEPVI 76 (249)
T ss_pred HHHHHHcCCceEEEEE--cCCCcHHHHHHHhcC-CCEEEEecccCCCCHHHHHHHHHHHhhc-CCCcEEEC--CCCCHHH
Confidence 3444444556663322 367888888888777 555532 1 124667777777776542 22222322 2334566
Q ss_pred HHHHHhcCCcEEEEccCCCcH---------------------------------HHHHHHHhCCCEEEEecCCHHHHHHH
Q 020013 80 IKAILSEKVAVLQVSWGEYSE---------------------------------ELVLEAHSAGVKVVPQVGSFDEARKA 126 (332)
Q Consensus 80 ~~~~~~~~~~~I~~~~g~~~~---------------------------------~~i~~~~~~g~~v~~~v~s~~~a~~a 126 (332)
+..+++.|++.|.+..= ... ++.+... ..+.+++.+-|++-...+
T Consensus 77 i~r~LD~Ga~gIivP~v-~taeea~~~v~a~kypP~G~Rg~~~~~r~~~y~~~~~y~~~~n-~~~~vi~~IEt~~av~n~ 154 (249)
T TIGR03239 77 IKRLLDIGFYNFLIPFV-ESAEEAERAVAATRYPPEGIRGVSVSHRSNRYGTVPDYFATIN-DNITVLVQIESQKGVDNV 154 (249)
T ss_pred HHHHhcCCCCEEEecCc-CCHHHHHHHHHHcCCCCCCcCCCCcchhhhccCChHHHHHHhc-cccEEEEEECCHHHHHhH
Confidence 77788888888766421 111 1222221 245678888776654443
Q ss_pred HH----cCCCEEEEecCC---CCcccCC--CCchhhhHHHHHHHhCCCCCcEEeecCcCCHHHHHHHHHcCcceeeeccc
Q 020013 127 VN----AGVDAIIVQGRE---AGGHVIG--QDGLISLLPMVVDLIGDRDIPIIAAGGIVDARGYVAALSLGAQGICLGTR 197 (332)
Q Consensus 127 ~~----~g~D~ivv~G~e---aGGh~~~--~~~~~~ll~~i~~~~~~~~iPviaaGGI~~~~~v~~al~~GA~gV~~GT~ 197 (332)
.+ .|+|++.+-..+ .=|+.+. .......+.++.+..+..++|+-. -..+++++..++..|++.+.+|+-
T Consensus 155 ~eI~av~gvd~l~iG~~DLs~slG~~~~~~~~~v~~a~~~v~~aa~a~G~~~g~--~~~~~~~~~~~~~~G~~~~~~~~D 232 (249)
T TIGR03239 155 DEIAAVDGVDGIFVGPSDLAAALGHLGNPNHPDVQKAIRHIFDRAAAHGKPCGI--LAPVEADARRYLEWGATFVAVGSD 232 (249)
T ss_pred HHHhCCCCCCEEEEChHHHHHHcCCCCCCCCHHHHHHHHHHHHHHHHcCCCEEE--cCCCHHHHHHHHHcCCCEEEEhHH
Confidence 32 579988872211 1122211 112334444444443323566532 124789999999999999999864
|
In E. coli this enzyme (GarL, ) 2-dehydro-3-deoxyglucarate aldolase acts in the catabolism of several sugars including D-galactarate, D-glucarate and L-idarate. In fact, 5-dehydro-4-deoxy-D-glucarate aldolase is a synonym for this enzyme as it is unclear in the literature whether the enzyme acts on only one of these or, as seems likely, has no preference. (Despite the apparent large difference in substrate stucture indicated by their names, 2-DH-3DO- and 5-DH-4DO-glucarate differ only by the chirality of most central hydroxyl-bearing carbon and is alternately named 2-DH-3DO-galactarate.) The reported product of D-galactarate dehydratase (4.2.1.42) is the 5DH-4DO-glucarate isomer and this enzyme is found proximal to the aldolase in many genomes (GenProp0714) where no epimerase is known. Similarly, the product of D-glucarate dehydratase (4.2.1.40) is again the 5-DH-4DO isomer, so the provenance of the 2-DH-3DO-glucarate isomer for which |
| >PF01207 Dus: Dihydrouridine synthase (Dus); InterPro: IPR001269 Members of this family catalyse the reduction of the 5,6-double bond of a uridine residue on tRNA | Back alignment and domain information |
|---|
Probab=92.43 E-value=1 Score=42.12 Aligned_cols=91 Identities=20% Similarity=0.352 Sum_probs=60.4
Q ss_pred CCHHHHHHHHHHHHhhcCCcEEEEeecCCC--C---HHHHHHHHhcCCcEEEEcc--------CCCcHHHHHHHHh-CCC
Q 020013 46 EAPDYLRDLIRKTRSLTERPFGVGVVLAFP--H---NENIKAILSEKVAVLQVSW--------GEYSEELVLEAHS-AGV 111 (332)
Q Consensus 46 ~~~e~~~~~i~~~r~~~~~p~gvnl~~~~~--~---~~~~~~~~~~~~~~I~~~~--------g~~~~~~i~~~~~-~g~ 111 (332)
.+|+.+.+.++.+++.++.|+.+.+=+... . .+.++.+.+.|++.|.+|. |...-+.++.+++ ..+
T Consensus 105 ~~p~~~~~iv~~~~~~~~~pvsvKiR~g~~~~~~~~~~~~~~l~~~G~~~i~vH~Rt~~q~~~~~a~w~~i~~i~~~~~i 184 (309)
T PF01207_consen 105 KDPDLLAEIVKAVRKAVPIPVSVKIRLGWDDSPEETIEFARILEDAGVSAITVHGRTRKQRYKGPADWEAIAEIKEALPI 184 (309)
T ss_dssp C-HHHHHHHHHHHHHH-SSEEEEEEESECT--CHHHHHHHHHHHHTT--EEEEECS-TTCCCTS---HHHHHHCHHC-TS
T ss_pred cChHHhhHHHHhhhcccccceEEecccccccchhHHHHHHHHhhhcccceEEEecCchhhcCCcccchHHHHHHhhcccc
Confidence 578999999999998888898887644332 2 3567778889999999993 1112245565554 368
Q ss_pred EEEE--ecCCHHHHHHHHHc-CCCEEEE
Q 020013 112 KVVP--QVGSFDEARKAVNA-GVDAIIV 136 (332)
Q Consensus 112 ~v~~--~v~s~~~a~~a~~~-g~D~ivv 136 (332)
+|+. .+.|.+++.+..+. |+|+|.+
T Consensus 185 pvi~NGdI~s~~d~~~~~~~tg~dgvMi 212 (309)
T PF01207_consen 185 PVIANGDIFSPEDAERMLEQTGADGVMI 212 (309)
T ss_dssp EEEEESS--SHHHHHHHCCCH-SSEEEE
T ss_pred eeEEcCccCCHHHHHHHHHhcCCcEEEE
Confidence 8885 47899999988766 9999988
|
Dihydrouridine modification of tRNA is widely observed in prokaryotes and eukaryotes, and also in some archae. Most dihydrouridines are found in the D loop of t-RNAs. The role of dihydrouridine in tRNA is currently unknown, but may increase conformational flexibility of the tRNA. It is likely that different family members have different substrate specificities, which may overlap. Dus 1 (P53759 from SWISSPROT) from Saccharomyces cerevisiae (Baker's yeast) acts on pre-tRNA-Phe, while Dus 2 (P53720 from SWISSPROT) acts on pre-tRNA-Tyr and pre-tRNA-Leu. Dus 1 is active as a single subunit, requiring NADPH or NADH, and is stimulated by the presence of FAD []. Some family members may be targeted to the mitochondria and even have a role in mitochondria []. ; GO: 0017150 tRNA dihydrouridine synthase activity, 0050660 flavin adenine dinucleotide binding, 0008033 tRNA processing, 0055114 oxidation-reduction process; PDB: 1VHN_A 3B0P_A 3B0V_D 3B0U_Y. |
| >TIGR02151 IPP_isom_2 isopentenyl-diphosphate delta-isomerase, type 2 | Back alignment and domain information |
|---|
Probab=92.38 E-value=2.3 Score=40.23 Aligned_cols=90 Identities=20% Similarity=0.102 Sum_probs=60.0
Q ss_pred CHHHHHHHHHHHHhhcCCcEEEEeecCCCCHHHHHHHHhcCCcEEEEccCC-Cc-------------------------H
Q 020013 47 APDYLRDLIRKTRSLTERPFGVGVVLAFPHNENIKAILSEKVAVLQVSWGE-YS-------------------------E 100 (332)
Q Consensus 47 ~~e~~~~~i~~~r~~~~~p~gvnl~~~~~~~~~~~~~~~~~~~~I~~~~g~-~~-------------------------~ 100 (332)
+.+.+.+.++.+++..+.|+.+.........+.++.+.+.|+|+|.++... .. .
T Consensus 163 ~f~~~le~i~~i~~~~~vPVivK~~g~g~~~~~a~~L~~aGvd~I~Vsg~gGt~~~~ie~~r~~~~~~~~~~~~~g~~t~ 242 (333)
T TIGR02151 163 NFKGWLEKIAEICSQLSVPVIVKEVGFGISKEVAKLLADAGVSAIDVAGAGGTSWAQVENYRAKGSNLASFFNDWGIPTA 242 (333)
T ss_pred CHHHHHHHHHHHHHhcCCCEEEEecCCCCCHHHHHHHHHcCCCEEEECCCCCCcccchhhhcccccccchhhhcccHhHH
Confidence 344455778888877789999876543333567778889999999986311 00 0
Q ss_pred HHHHHHHh--CCCEEEE--ecCCHHHHHHHHHcCCCEEEE
Q 020013 101 ELVLEAHS--AGVKVVP--QVGSFDEARKAVNAGVDAIIV 136 (332)
Q Consensus 101 ~~i~~~~~--~g~~v~~--~v~s~~~a~~a~~~g~D~ivv 136 (332)
+.+..+++ ..++|+. .+.+..++.+++..|||+|-+
T Consensus 243 ~~l~~~~~~~~~ipVIasGGI~~~~di~kaLalGAd~V~i 282 (333)
T TIGR02151 243 ASLLEVRSDAPDAPIIASGGLRTGLDVAKAIALGADAVGM 282 (333)
T ss_pred HHHHHHHhcCCCCeEEEECCCCCHHHHHHHHHhCCCeehh
Confidence 11222232 3567764 467899999999999999876
|
Isopentenyl-diphosphate delta-isomerase (IPP isomerase) interconverts isopentenyl diphosphate and dimethylallyl diphosphate. This model represents the type 2 enzyme. FMN, NADPH, and Mg2+ are required by this form, which lacks homology to the type 1 enzyme (TIGR02150). IPP is precursor to many compounds, including enzyme cofactors, sterols, and isoprenoids. |
| >TIGR00737 nifR3_yhdG putative TIM-barrel protein, nifR3 family | Back alignment and domain information |
|---|
Probab=92.35 E-value=2.1 Score=40.24 Aligned_cols=90 Identities=11% Similarity=0.236 Sum_probs=63.0
Q ss_pred CHHHHHHHHHHHHhhcCCcEEEEeecC-CC----CHHHHHHHHhcCCcEEEEccCC--------CcHHHHHHHHh-CCCE
Q 020013 47 APDYLRDLIRKTRSLTERPFGVGVVLA-FP----HNENIKAILSEKVAVLQVSWGE--------YSEELVLEAHS-AGVK 112 (332)
Q Consensus 47 ~~e~~~~~i~~~r~~~~~p~gvnl~~~-~~----~~~~~~~~~~~~~~~I~~~~g~--------~~~~~i~~~~~-~g~~ 112 (332)
.++.+.+.++.+++.++.|+.+.+-.. .+ ..+.++.+.+.|++.|.+|... ...++++.+++ .+++
T Consensus 115 ~~~~~~ei~~~vr~~~~~pv~vKir~g~~~~~~~~~~~a~~l~~~G~d~i~vh~r~~~~~~~~~~~~~~i~~i~~~~~ip 194 (319)
T TIGR00737 115 DPDLIGKIVKAVVDAVDIPVTVKIRIGWDDAHINAVEAARIAEDAGAQAVTLHGRTRAQGYSGEANWDIIARVKQAVRIP 194 (319)
T ss_pred CHHHHHHHHHHHHhhcCCCEEEEEEcccCCCcchHHHHHHHHHHhCCCEEEEEcccccccCCCchhHHHHHHHHHcCCCc
Confidence 567788889999888888988876321 11 1345566777899999887311 12245566665 3677
Q ss_pred EEE--ecCCHHHHHHHH-HcCCCEEEE
Q 020013 113 VVP--QVGSFDEARKAV-NAGVDAIIV 136 (332)
Q Consensus 113 v~~--~v~s~~~a~~a~-~~g~D~ivv 136 (332)
|+. .+.+.+++.+++ ..|+|+|.+
T Consensus 195 vi~nGgI~~~~da~~~l~~~gad~Vmi 221 (319)
T TIGR00737 195 VIGNGDIFSPEDAKAMLETTGCDGVMI 221 (319)
T ss_pred EEEeCCCCCHHHHHHHHHhhCCCEEEE
Confidence 774 578999999998 578999988
|
Members of this family show a distant relationship to alpha/beta (TIM) barrel enzymes such as dihydroorotate dehydrogenase and glycolate oxidase. |
| >PF03102 NeuB: NeuB family; InterPro: IPR013132 NeuB is the prokaryotic N-acetylneuraminic acid synthase (Neu5Ac) | Back alignment and domain information |
|---|
Probab=92.19 E-value=5.7 Score=35.79 Aligned_cols=135 Identities=16% Similarity=0.251 Sum_probs=72.0
Q ss_pred CCHHHHHHHHHHHHhhcCCcEEEEeecCCCCHHHHHHHHhcCCcEEEEccCC-CcHHHHHHHHhCCCEEEEecC--CHHH
Q 020013 46 EAPDYLRDLIRKTRSLTERPFGVGVVLAFPHNENIKAILSEKVAVLQVSWGE-YSEELVLEAHSAGVKVVPQVG--SFDE 122 (332)
Q Consensus 46 ~~~e~~~~~i~~~r~~~~~p~gvnl~~~~~~~~~~~~~~~~~~~~I~~~~g~-~~~~~i~~~~~~g~~v~~~v~--s~~~ 122 (332)
.+.|+.+++.+..++. |+.++...-+.+.++.+.+.+++++-++-++ ....+++.+.+.|.+++...+ +.+|
T Consensus 53 l~~e~~~~L~~~~~~~-----gi~f~stpfd~~s~d~l~~~~~~~~KIaS~dl~n~~lL~~~A~tgkPvIlSTG~stl~E 127 (241)
T PF03102_consen 53 LSEEQHKELFEYCKEL-----GIDFFSTPFDEESVDFLEELGVPAYKIASGDLTNLPLLEYIAKTGKPVILSTGMSTLEE 127 (241)
T ss_dssp S-HHHHHHHHHHHHHT-----T-EEEEEE-SHHHHHHHHHHT-SEEEE-GGGTT-HHHHHHHHTT-S-EEEE-TT--HHH
T ss_pred CCHHHHHHHHHHHHHc-----CCEEEECCCCHHHHHHHHHcCCCEEEeccccccCHHHHHHHHHhCCcEEEECCCCCHHH
Confidence 3556666666666542 3443433334778888888899999886433 334688888889999998765 6666
Q ss_pred HHHH---H-Hc-CCCEEEEecCCCCcccCCC--CchhhhHHHHHHHhCCCCCcEEeecCcCCHHHHHHHHHcCcce
Q 020013 123 ARKA---V-NA-GVDAIIVQGREAGGHVIGQ--DGLISLLPMVVDLIGDRDIPIIAAGGIVDARGYVAALSLGAQG 191 (332)
Q Consensus 123 a~~a---~-~~-g~D~ivv~G~eaGGh~~~~--~~~~~ll~~i~~~~~~~~iPviaaGGI~~~~~v~~al~~GA~g 191 (332)
...+ . +. +.+.++.+... +.. .+ ..-+..++.+++.. ++||=.+.=-....-...|.++||.-
T Consensus 128 I~~Av~~~~~~~~~~l~llHC~s--~YP-~~~e~~NL~~i~~L~~~f---~~~vG~SDHt~g~~~~~~AvalGA~v 197 (241)
T PF03102_consen 128 IERAVEVLREAGNEDLVLLHCVS--SYP-TPPEDVNLRVIPTLKERF---GVPVGYSDHTDGIEAPIAAVALGARV 197 (241)
T ss_dssp HHHHHHHHHHHCT--EEEEEE-S--SSS---GGG--TTHHHHHHHHS---TSEEEEEE-SSSSHHHHHHHHTT-SE
T ss_pred HHHHHHHHHhcCCCCEEEEecCC--CCC-CChHHcChHHHHHHHHhc---CCCEEeCCCCCCcHHHHHHHHcCCeE
Confidence 5544 3 33 56666665541 111 11 12366788888877 68885555443223344666788653
|
It catalyses the direct formation of Neu5Ac (the most common sialic acid) by condensation of phosphoenolpyruvate (PEP) and N-acetylmannosamine (ManNAc). This reaction has only been observed in prokaryotes; eukaryotes synthesise the 9-phosphate form, Neu5Ac-9-P, and utilise ManNAc-6-P instead of ManNAc. Such eukaryotic enzymes are not present in this family []. This family also contains SpsE spore coat polysaccharide biosynthesis proteins.; GO: 0016051 carbohydrate biosynthetic process; PDB: 3G8R_B 1XUU_A 1XUZ_A 3CM4_A 2ZDR_A 1VLI_A 2WQP_A. |
| >cd04738 DHOD_2_like Dihydroorotate dehydrogenase (DHOD) class 2 | Back alignment and domain information |
|---|
Probab=92.18 E-value=1.1 Score=42.42 Aligned_cols=91 Identities=14% Similarity=0.228 Sum_probs=63.0
Q ss_pred CCHHHHHHHHHHHHhhcC-----CcEEEEeecCCCC---HHHHHHHHhcCCcEEEEccCC-----------------C--
Q 020013 46 EAPDYLRDLIRKTRSLTE-----RPFGVGVVLAFPH---NENIKAILSEKVAVLQVSWGE-----------------Y-- 98 (332)
Q Consensus 46 ~~~e~~~~~i~~~r~~~~-----~p~gvnl~~~~~~---~~~~~~~~~~~~~~I~~~~g~-----------------~-- 98 (332)
.+++.+.+.++.+++.++ .|+.+.+-..... .+..+.+.+.|+|.|.++... .
T Consensus 180 ~~~~~~~~iv~av~~~~~~~~~~~Pv~vKl~~~~~~~~~~~ia~~l~~aGad~I~~~n~~~~~~~~~~~~~~~~~gG~sG 259 (327)
T cd04738 180 QGKEALRELLTAVKEERNKLGKKVPLLVKIAPDLSDEELEDIADVALEHGVDGIIATNTTISRPGLLRSPLANETGGLSG 259 (327)
T ss_pred cCHHHHHHHHHHHHHHHhhcccCCCeEEEeCCCCCHHHHHHHHHHHHHcCCcEEEEECCcccccccccccccCCCCccCC
Confidence 356888899999988764 8999888643321 234556677899999865210 0
Q ss_pred -c-----HHHHHHHHhC---CCEEE--EecCCHHHHHHHHHcCCCEEEE
Q 020013 99 -S-----EELVLEAHSA---GVKVV--PQVGSFDEARKAVNAGVDAIIV 136 (332)
Q Consensus 99 -~-----~~~i~~~~~~---g~~v~--~~v~s~~~a~~a~~~g~D~ivv 136 (332)
+ .+.+..+++. .++|+ ..+.+.+++.+...+|+|.|-+
T Consensus 260 ~~~~~~~l~~v~~l~~~~~~~ipIi~~GGI~t~~da~e~l~aGAd~V~v 308 (327)
T cd04738 260 APLKERSTEVLRELYKLTGGKIPIIGVGGISSGEDAYEKIRAGASLVQL 308 (327)
T ss_pred hhhhHHHHHHHHHHHHHhCCCCcEEEECCCCCHHHHHHHHHcCCCHHhc
Confidence 0 2445555553 46666 3578999999999999999976
|
DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences, their cellular location and their natural electron acceptor used to reoxidize the flavin group. Members of class 1 are cytosolic enzymes and multimers, while class 2 enzymes are membrane associated, monomeric and use respiratory quinones as their physiological electron acceptors. |
| >TIGR02317 prpB methylisocitrate lyase | Back alignment and domain information |
|---|
Probab=92.17 E-value=1.5 Score=40.57 Aligned_cols=92 Identities=20% Similarity=0.221 Sum_probs=61.6
Q ss_pred HHHHHh-CCCEEEEecCCHHHHHHHHHcCCCEEEEecCCCC---cccC-CCCch---hhhHHHHHHHhCCCCCcEEee--
Q 020013 103 VLEAHS-AGVKVVPQVGSFDEARKAVNAGVDAIIVQGREAG---GHVI-GQDGL---ISLLPMVVDLIGDRDIPIIAA-- 172 (332)
Q Consensus 103 i~~~~~-~g~~v~~~v~s~~~a~~a~~~g~D~ivv~G~eaG---Gh~~-~~~~~---~~ll~~i~~~~~~~~iPviaa-- 172 (332)
.+++++ .+..+.+.+.+.-.|+.++++|.+++.+.|.... |..+ +..+. +..+..|.+.+ ++||++.
T Consensus 5 lr~l~~~~~~l~~p~~~Da~SAri~e~aGf~Ai~~sg~~~a~~lG~pD~g~lt~~e~~~~~~~I~~~~---~iPviaD~d 81 (285)
T TIGR02317 5 FRAALAKEDILQIPGAINAMAALLAERAGFEAIYLSGAAVAASLGLPDLGITTLDEVAEDARRITRVT---DLPLLVDAD 81 (285)
T ss_pred HHHHHhCCCcEEeCCCCCHHHHHHHHHcCCCEEEEcHHHHHHhCCCCCCCCCCHHHHHHHHHHHHhcc---CCCEEEECC
Confidence 444444 4577778899999999999999999999775322 1111 11122 33344444444 7999975
Q ss_pred cCcCCHHH----HHHHHHcCcceeeeccc
Q 020013 173 GGIVDARG----YVAALSLGAQGICLGTR 197 (332)
Q Consensus 173 GGI~~~~~----v~~al~~GA~gV~~GT~ 197 (332)
.|-+++.+ +.++..+|+.|+.+=-.
T Consensus 82 ~GyG~~~~v~~tv~~~~~aG~agi~IEDq 110 (285)
T TIGR02317 82 TGFGEAFNVARTVREMEDAGAAAVHIEDQ 110 (285)
T ss_pred CCCCCHHHHHHHHHHHHHcCCeEEEEecC
Confidence 57777777 45667799999999543
|
Members of this family are methylisocitrate lyase, also called (2S,3R)-3-hydroxybutane-1,2,3-tricarboxylate pyruvate-lyase. This enzyme acts in propionate metabolism. It cleaves a carbon-carbon bond to convert 2-methylisocitrate to pyruvate plus succinate. Some members of this family have been annotated, incorrectly it seems, as the related protein carboxyphosphoenolpyruvate phosphomutase, which is involved in synthesizing the antibiotic bialaphos in Streptomyces hygroscopicus. |
| >PRK11320 prpB 2-methylisocitrate lyase; Provisional | Back alignment and domain information |
|---|
Probab=92.16 E-value=1.1 Score=41.51 Aligned_cols=92 Identities=20% Similarity=0.180 Sum_probs=62.2
Q ss_pred HHHHHHhC-CCEEEEecCCHHHHHHHHHcCCCEEEEecCCCC----cccC-CCCc---hhhhHHHHHHHhCCCCCcEEee
Q 020013 102 LVLEAHSA-GVKVVPQVGSFDEARKAVNAGVDAIIVQGREAG----GHVI-GQDG---LISLLPMVVDLIGDRDIPIIAA 172 (332)
Q Consensus 102 ~i~~~~~~-g~~v~~~v~s~~~a~~a~~~g~D~ivv~G~eaG----Gh~~-~~~~---~~~ll~~i~~~~~~~~iPviaa 172 (332)
..+.+++. +..+.+.+.+.-.|+.+++.|.+++-+.|..-. |..+ +..+ ....+..|.+.+ ++||++.
T Consensus 8 ~lr~ll~~~~~l~~p~~~Da~SAri~e~~Gf~ai~~Sg~~~a~~~lG~PD~g~l~~~e~~~~~~~I~~~~---~iPviaD 84 (292)
T PRK11320 8 RFRAALAAEKPLQIVGTINAYHALLAERAGFKAIYLSGGGVAAASLGLPDLGITTLDDVLIDVRRITDAC---DLPLLVD 84 (292)
T ss_pred HHHHHHcCCCcEEecCCCCHHHHHHHHHcCCCEEEeCHHHHHhHhcCCCCCCCCCHHHHHHHHHHHHhcc---CCCEEEE
Confidence 34444444 567778899999999999999999998775321 2222 1112 233444555555 7999975
Q ss_pred --cCcCCHHHH----HHHHHcCcceeeecc
Q 020013 173 --GGIVDARGY----VAALSLGAQGICLGT 196 (332)
Q Consensus 173 --GGI~~~~~v----~~al~~GA~gV~~GT 196 (332)
.|-+++.++ .++..+|+.|+.+=-
T Consensus 85 ~d~GyG~~~~v~r~V~~~~~aGaagi~IED 114 (292)
T PRK11320 85 IDTGFGGAFNIARTVKSMIKAGAAAVHIED 114 (292)
T ss_pred CCCCCCCHHHHHHHHHHHHHcCCeEEEEec
Confidence 566688885 566679999999943
|
|
| >TIGR01501 MthylAspMutase methylaspartate mutase, S subunit | Back alignment and domain information |
|---|
Probab=92.06 E-value=1.6 Score=35.60 Aligned_cols=84 Identities=18% Similarity=0.171 Sum_probs=46.8
Q ss_pred HHHHhCCCEEEE---ecCCHHHHHHHHHcCCCEEEEecCCCCcccCCCCchhhhHHHHHHHhCC---CCCcEEeecCcC-
Q 020013 104 LEAHSAGVKVVP---QVGSFDEARKAVNAGVDAIIVQGREAGGHVIGQDGLISLLPMVVDLIGD---RDIPIIAAGGIV- 176 (332)
Q Consensus 104 ~~~~~~g~~v~~---~v~s~~~a~~a~~~g~D~ivv~G~eaGGh~~~~~~~~~ll~~i~~~~~~---~~iPviaaGGI~- 176 (332)
..+++.|..|+- .++..+-++.+.+.++|+|.+...- || ++..++++.+.+++ .+++|+..|++.
T Consensus 23 ~~l~~~GfeVi~LG~~v~~e~~v~aa~~~~adiVglS~l~--~~------~~~~~~~~~~~l~~~gl~~~~vivGG~~vi 94 (134)
T TIGR01501 23 HAFTNAGFNVVNLGVLSPQEEFIKAAIETKADAILVSSLY--GH------GEIDCKGLRQKCDEAGLEGILLYVGGNLVV 94 (134)
T ss_pred HHHHHCCCEEEECCCCCCHHHHHHHHHHcCCCEEEEeccc--cc------CHHHHHHHHHHHHHCCCCCCEEEecCCcCc
Confidence 345677877762 2333444566778899999885432 12 13344555444422 245555555422
Q ss_pred CHHHH----HHHHHcCcceeeec
Q 020013 177 DARGY----VAALSLGAQGICLG 195 (332)
Q Consensus 177 ~~~~v----~~al~~GA~gV~~G 195 (332)
..++. .++.++|.++|.-.
T Consensus 95 ~~~d~~~~~~~l~~~Gv~~vF~p 117 (134)
T TIGR01501 95 GKQDFPDVEKRFKEMGFDRVFAP 117 (134)
T ss_pred ChhhhHHHHHHHHHcCCCEEECc
Confidence 33443 34778898887643
|
This model represents the S (sigma) subunit of methylaspartate mutase (glutamate mutase), a cobalamin-dependent enzyme that catalyzes the first step in a pathway of glutamate fermentation. |
| >CHL00200 trpA tryptophan synthase alpha subunit; Provisional | Back alignment and domain information |
|---|
Probab=92.00 E-value=4.5 Score=36.95 Aligned_cols=122 Identities=12% Similarity=0.113 Sum_probs=75.7
Q ss_pred CccceecCCCCCCC-----CcHHHHHHHHhCCCceeecCCCCCCHHHHHHHHHHHHhhcCCcEEEEeecCCCCHHHHHHH
Q 020013 9 FEYGIVQAPLGPDI-----SGPELVAAVANAGGLGLLRAPDWEAPDYLRDLIRKTRSLTERPFGVGVVLAFPHNENIKAI 83 (332)
Q Consensus 9 ~~~Pii~apM~~g~-----s~~~la~avs~aGglG~i~~~~~~~~e~~~~~i~~~r~~~~~p~gvnl~~~~~~~~~~~~~ 83 (332)
.+.|++ =|+..- .-..+....+++|.-|++.. . .++|+..+.++.+++.. . --+-++.+....+.++.+
T Consensus 90 ~~~p~v--lm~Y~N~i~~~G~e~F~~~~~~aGvdgviip-D-LP~ee~~~~~~~~~~~g-i-~~I~lv~PtT~~eri~~i 163 (263)
T CHL00200 90 IKAPIV--IFTYYNPVLHYGINKFIKKISQAGVKGLIIP-D-LPYEESDYLISVCNLYN-I-ELILLIAPTSSKSRIQKI 163 (263)
T ss_pred CCCCEE--EEecccHHHHhCHHHHHHHHHHcCCeEEEec-C-CCHHHHHHHHHHHHHcC-C-CEEEEECCCCCHHHHHHH
Confidence 345766 565311 22568888999999999865 2 57787777777777642 1 112233333335677666
Q ss_pred HhcCCcEEEE-c-c---CC---C---cHHHHHHHHhC-CCEEE--EecCCHHHHHHHHHcCCCEEEE
Q 020013 84 LSEKVAVLQV-S-W---GE---Y---SEELVLEAHSA-GVKVV--PQVGSFDEARKAVNAGVDAIIV 136 (332)
Q Consensus 84 ~~~~~~~I~~-~-~---g~---~---~~~~i~~~~~~-g~~v~--~~v~s~~~a~~a~~~g~D~ivv 136 (332)
.+..-.+|.+ + . |. . ..++++++|+. +.++. ..+++.++++.+.+.|+|++|+
T Consensus 164 ~~~a~gFIY~vS~~GvTG~~~~~~~~~~~~i~~ir~~t~~Pi~vGFGI~~~e~~~~~~~~GADGvVV 230 (263)
T CHL00200 164 ARAAPGCIYLVSTTGVTGLKTELDKKLKKLIETIKKMTNKPIILGFGISTSEQIKQIKGWNINGIVI 230 (263)
T ss_pred HHhCCCcEEEEcCCCCCCCCccccHHHHHHHHHHHHhcCCCEEEECCcCCHHHHHHHHhcCCCEEEE
Confidence 6654335543 1 1 21 1 23456666653 45544 4577899999999999999998
|
|
| >TIGR03249 KdgD 5-dehydro-4-deoxyglucarate dehydratase | Back alignment and domain information |
|---|
Probab=91.94 E-value=0.9 Score=42.19 Aligned_cols=78 Identities=14% Similarity=0.219 Sum_probs=49.2
Q ss_pred HHHHHHHcCCCEEEEecCCCCcccCCCCchhhhHHHHHHHhCCCCCcEEeecCcCCHHHHH----HHHHcCcceeeeccc
Q 020013 122 EARKAVNAGVDAIIVQGREAGGHVIGQDGLISLLPMVVDLIGDRDIPIIAAGGIVDARGYV----AALSLGAQGICLGTR 197 (332)
Q Consensus 122 ~a~~a~~~g~D~ivv~G~eaGGh~~~~~~~~~ll~~i~~~~~~~~iPviaaGGI~~~~~v~----~al~~GA~gV~~GT~ 197 (332)
.+....+.|+|+|++-|..+.++......-..++..+++..++ ++||++.=|- +-++.. .+-.+|||++++-..
T Consensus 31 li~~l~~~Gv~gi~v~GstGE~~~Lt~eEr~~v~~~~~~~~~g-~~pvi~gv~~-~t~~ai~~a~~a~~~Gadav~~~pP 108 (296)
T TIGR03249 31 NIEWLLGYGLEALFAAGGTGEFFSLTPAEYEQVVEIAVSTAKG-KVPVYTGVGG-NTSDAIEIARLAEKAGADGYLLLPP 108 (296)
T ss_pred HHHHHHhcCCCEEEECCCCcCcccCCHHHHHHHHHHHHHHhCC-CCcEEEecCc-cHHHHHHHHHHHHHhCCCEEEECCC
Confidence 3455678999999997664444331222234556666666543 6898876553 334432 334589999999888
Q ss_pred cccC
Q 020013 198 FVAS 201 (332)
Q Consensus 198 fl~t 201 (332)
+...
T Consensus 109 ~y~~ 112 (296)
T TIGR03249 109 YLIN 112 (296)
T ss_pred CCCC
Confidence 7754
|
5-dehydro-4-deoxyglucarate dehydratase not only catalyzes the dehydration of the substrate (diol to ketone + water), but causes the decarboxylation of the intermediate product to yield 2-oxoglutarate semialdehyde (2,5-dioxopentanoate). The gene for the enzyme is usually observed in the vicinity of transporters and dehydratases handling D-galactarate and D-gluconate as well as aldehyde dehydrogenases which convert the product to alpha-ketoglutarate. |
| >PLN02858 fructose-bisphosphate aldolase | Back alignment and domain information |
|---|
Probab=91.91 E-value=11 Score=42.73 Aligned_cols=123 Identities=19% Similarity=0.250 Sum_probs=78.7
Q ss_pred HHHHHHHHhcCCcEEEEccCCCc--------HHHHHHHHhCCCEEEE-------------------ecCCHHHHHHHHH-
Q 020013 77 NENIKAILSEKVAVLQVSWGEYS--------EELVLEAHSAGVKVVP-------------------QVGSFDEARKAVN- 128 (332)
Q Consensus 77 ~~~~~~~~~~~~~~I~~~~g~~~--------~~~i~~~~~~g~~v~~-------------------~v~s~~~a~~a~~- 128 (332)
.+.+..+++.|.+.|-+.....| .++++.++..|+.|=. ..+++++|++..+
T Consensus 1182 ~~~i~~ai~~Gf~SVM~DgS~l~~eeNi~~t~~vv~~Ah~~gv~VEaElG~v~g~e~~~~~~~~~~~~T~p~~a~~Fv~~ 1261 (1378)
T PLN02858 1182 KHELLEALELGFDSVMVDGSHLSFTENISYTKSISSLAHSKGLMVEAELGRLSGTEDGLTVEEYEAKLTDVDQAKEFIDE 1261 (1378)
T ss_pred HHHHHHHHHhCCCEEEEeCCCCCHHHHHHHHHHHHHHHHHcCCEEEEEecccCCccCCccccccccCCCCHHHHHHHHHh
Confidence 45666677777777766522222 2345556666665421 1346788888764
Q ss_pred cCCCEEEE-ecCCCCcccC-CCCchhhhHHHHHHHhCCCCCcEEeecCcC-CHHHHHHHHHcCcceeeeccccc
Q 020013 129 AGVDAIIV-QGREAGGHVI-GQDGLISLLPMVVDLIGDRDIPIIAAGGIV-DARGYVAALSLGAQGICLGTRFV 199 (332)
Q Consensus 129 ~g~D~ivv-~G~eaGGh~~-~~~~~~~ll~~i~~~~~~~~iPviaaGGI~-~~~~v~~al~~GA~gV~~GT~fl 199 (332)
-|+|.+-+ .|.-=|-... .+.-.+.++.++.+.+...++|++.-||=+ ..+++.+++..|..-|=++|.+.
T Consensus 1262 TgvD~LAvaiGt~HG~Y~~~~p~l~~~~l~~i~~~~~~~~vpLVlHGgSG~~~~~~~~ai~~Gi~KiNi~T~~~ 1335 (1378)
T PLN02858 1262 TGIDALAVCIGNVHGKYPASGPNLRLDLLKELRALSSKKGVLLVLHGASGLPESLIKECIENGVRKFNVNTEVR 1335 (1378)
T ss_pred cCCcEEeeecccccccCCCCCCccCHHHHHHHHHHhcCCCCcEEEeCCCCCCHHHHHHHHHcCCeEEEeCHHHH
Confidence 59999876 3331111111 123458899999998743369999777533 35778999999999999998854
|
|
| >cd00516 PRTase_typeII Phosphoribosyltransferase (PRTase) type II; This family contains two enzymes that play an important role in NAD production by either allowing quinolinic acid (QA) , quinolinate phosphoribosyl transferase (QAPRTase), or nicotinic acid (NA), nicotinate phosphoribosyltransferase (NAPRTase), to be used in the synthesis of NAD | Back alignment and domain information |
|---|
Probab=91.85 E-value=1.2 Score=40.84 Aligned_cols=83 Identities=22% Similarity=0.277 Sum_probs=56.3
Q ss_pred EEEecCCHHHHHHHHHcC-CCEEEEecCCCCcccCCCCchhhhHHHHHHHhCC---CCCcEEeecCcCCHHHHHHHHHcC
Q 020013 113 VVPQVGSFDEARKAVNAG-VDAIIVQGREAGGHVIGQDGLISLLPMVVDLIGD---RDIPIIAAGGIVDARGYVAALSLG 188 (332)
Q Consensus 113 v~~~v~s~~~a~~a~~~g-~D~ivv~G~eaGGh~~~~~~~~~ll~~i~~~~~~---~~iPviaaGGI~~~~~v~~al~~G 188 (332)
+-..+.+.+++..+.+++ +|+|-++.... ........+.+..+.+.. .++-++++||| |.+++..+...|
T Consensus 187 idve~~~~~~~~~~~~~~~~d~irlDs~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~i~~Sggi-~~~~i~~~~~~g 260 (281)
T cd00516 187 IDVEVDTLEEALEAAKAGGADGIRLDSGSP-----EELDPAVLILKARAHLDGKGLPRVKIEASGGL-DEENIRAYAETG 260 (281)
T ss_pred EEEEeCCHHHHHHHHhcCCCCEEEeCCCCh-----HHHHHHHHHHHHHHhhhhcCCCceEEEEeCCC-CHHHHHHHHHcC
Confidence 335567899999999999 99999864311 000111111122221110 15679999999 799999999999
Q ss_pred cceeeeccccccC
Q 020013 189 AQGICLGTRFVAS 201 (332)
Q Consensus 189 A~gV~~GT~fl~t 201 (332)
.|.+.+||.+...
T Consensus 261 vd~~gvG~~~~~~ 273 (281)
T cd00516 261 VDVFGVGTLLHSA 273 (281)
T ss_pred CCEEEeCcccccC
Confidence 9999999988765
|
QAPRTase catalyses the reaction of quinolinic acid (QA) with 5-phosphoribosyl-1-pyrophosphate (PRPP) in the presence of Mg2+ to produce nicotinic acid mononucleotide (NAMN), pyrophosphate and carbon dioxide, an important step in the de novo synthesis of NAD. NAPRTase catalyses a similar reaction leading to NAMN and pyrophosphate, using nicotinic acid an PPRP as substrates, used in the NAD salvage pathway. |
| >cd08556 GDPD Glycerophosphodiester phosphodiesterase domain as found in prokaryota and eukaryota, and similar proteins | Back alignment and domain information |
|---|
Probab=91.83 E-value=2.1 Score=36.24 Aligned_cols=55 Identities=31% Similarity=0.398 Sum_probs=45.2
Q ss_pred HHHhcCCcEEEEccCCCcHHHHHHHHhCCCEEEE-ecCCHHHHHHHHHcCCCEEEE
Q 020013 82 AILSEKVAVLQVSWGEYSEELVLEAHSAGVKVVP-QVGSFDEARKAVNAGVDAIIV 136 (332)
Q Consensus 82 ~~~~~~~~~I~~~~g~~~~~~i~~~~~~g~~v~~-~v~s~~~a~~a~~~g~D~ivv 136 (332)
.....+++.+.+++.....+.++.+++.|++++. .+.+.++.+.+.+.|+|+|+.
T Consensus 132 ~~~~~~~~~v~~~~~~~~~~~i~~~~~~g~~v~~wtvn~~~~~~~~~~~GVdgI~T 187 (189)
T cd08556 132 LARALGADAVNPHYKLLTPELVRAAHAAGLKVYVWTVNDPEDARRLLALGVDGIIT 187 (189)
T ss_pred HHHhcCCeEEccChhhCCHHHHHHHHHcCCEEEEEcCCCHHHHHHHHHCCCCEEec
Confidence 4566788888887655567899999999999875 467899999999999999975
|
The typical glycerophosphodiester phosphodiesterase domain (GDPD) consists of a TIM barrel and a small insertion domain named the GDPD-insertion (GDPD-I) domain, which is specific for GDPD proteins. This family corresponds to both typical GDPD domain and GDPD-like domain which lacks the GDPD-I region. Members in this family mainly consist of a large family of prokaryotic and eukaryotic glycerophosphodiester phosphodiesterases (GP-GDEs, EC 3.1.4.46), and a number of uncharacterized homologs. Sphingomyelinases D (SMases D) (sphingomyelin phosphodiesterase D, EC 3.1.4.41) from spider venom, SMases D-like proteins, and phospholipase D (PLD) from several pathogenic bacteria are also included in this family. GDPD plays an essential role in glycerol metabolism and catalyzes the hydrolysis of glycerophosphodiesters to sn-glycerol-3-phosphate (G3P) and the corresponding alcoho |
| >cd08562 GDPD_EcUgpQ_like Glycerophosphodiester phosphodiesterase domain in Escherichia coli cytosolic glycerophosphodiester phosphodiesterase UgpQ and similar proteins | Back alignment and domain information |
|---|
Probab=91.81 E-value=1.7 Score=38.39 Aligned_cols=59 Identities=22% Similarity=0.295 Sum_probs=45.1
Q ss_pred HHHHHHhcCCcEEEEccCCCcHHHHHHHHhCCCEEEE-ecCCHHHHHHHHHcCCCEEEEe
Q 020013 79 NIKAILSEKVAVLQVSWGEYSEELVLEAHSAGVKVVP-QVGSFDEARKAVNAGVDAIIVQ 137 (332)
Q Consensus 79 ~~~~~~~~~~~~I~~~~g~~~~~~i~~~~~~g~~v~~-~v~s~~~a~~a~~~g~D~ivv~ 137 (332)
..+.+.+.+++.+........+++++.+++.|++|+. ++.+.++...+.+.|+|+|+..
T Consensus 168 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~g~~v~~wTvn~~~~~~~~~~~gVdgiiTD 227 (229)
T cd08562 168 WLELLAALGAVSIHLNYRGLTEEQVKALKDAGYKLLVYTVNDPARAAELLEWGVDAIFTD 227 (229)
T ss_pred HHHHHHHcCCeEEecChhhCCHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHCCCCEEEcC
Confidence 3344555667777665444467899999999999885 4778999999999999999864
|
This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in Escherichia coli cytosolic glycerophosphodiester phosphodiesterase (GP-GDE, EC 3.1.4.46), UgpQ, and similar proteins. GP-GDE plays an essential role in the metabolic pathway of E. coli. It catalyzes the degradation of glycerophosphodiesters to produce sn-glycerol-3-phosphate (G3P) and the corresponding alcohols, which are major sources of carbon and phosphate. E. coli possesses two major G3P uptake systems: Glp and Ugp, which contain genes coding for two distinct GP-GDEs. UgpQ gene from the E. coli ugp operon codes for a cytosolic phosphodiesterase GlpQ, which is the prototype of this family. Various glycerophosphodiesters, such as glycerophosphocholine (GPC), glycerophosphoethanolanmine (GPE), glycerophosphoglycerol (GPG) |
| >PRK00311 panB 3-methyl-2-oxobutanoate hydroxymethyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=91.72 E-value=1.9 Score=39.41 Aligned_cols=88 Identities=22% Similarity=0.163 Sum_probs=54.8
Q ss_pred HHHHHhCC-CEEEEecCCHHHHHHHHHcCCCEEEEecCCCC----cccCCC-Cch---hhhHHHHHHHhCCCCCc-EEee
Q 020013 103 VLEAHSAG-VKVVPQVGSFDEARKAVNAGVDAIIVQGREAG----GHVIGQ-DGL---ISLLPMVVDLIGDRDIP-IIAA 172 (332)
Q Consensus 103 i~~~~~~g-~~v~~~v~s~~~a~~a~~~g~D~ivv~G~eaG----Gh~~~~-~~~---~~ll~~i~~~~~~~~iP-viaa 172 (332)
++.+++.+ ..+++.+.+.-.|+.+.++|+|+|.+ |...+ |+.+.. .+. +..++.+++.. +.| |++.
T Consensus 7 lr~~~~~g~~i~~~tayD~~sArl~e~aG~d~i~v-Gds~~~~~lG~~Dt~~vtl~em~~h~~~V~r~~---~~p~vvaD 82 (264)
T PRK00311 7 LQKMKQEGEKIVMLTAYDYPFAKLFDEAGVDVILV-GDSLGMVVLGYDSTLPVTLDDMIYHTKAVARGA---PRALVVAD 82 (264)
T ss_pred HHHHHhCCCCEEEEeCCCHHHHHHHHHcCCCEEEE-CHHHHHHHcCCCCCCCcCHHHHHHHHHHHHhcC---CCCcEEEe
Confidence 44555554 56678899999999999999999985 53222 443221 222 22334444433 454 7775
Q ss_pred cCcC----CHHH----HHHHHH-cCcceeee
Q 020013 173 GGIV----DARG----YVAALS-LGAQGICL 194 (332)
Q Consensus 173 GGI~----~~~~----v~~al~-~GA~gV~~ 194 (332)
-+.+ ++++ +.+.+. .||++|-+
T Consensus 83 ~pfg~y~~~~~~av~~a~r~~~~aGa~aVki 113 (264)
T PRK00311 83 MPFGSYQASPEQALRNAGRLMKEAGAHAVKL 113 (264)
T ss_pred CCCCCccCCHHHHHHHHHHHHHHhCCeEEEE
Confidence 5433 3344 456666 99999998
|
|
| >cd02809 alpha_hydroxyacid_oxid_FMN Family of homologous FMN-dependent alpha-hydroxyacid oxidizing enzymes | Back alignment and domain information |
|---|
Probab=91.58 E-value=2.2 Score=39.68 Aligned_cols=81 Identities=20% Similarity=0.197 Sum_probs=55.9
Q ss_pred HHHHHHHhhcCCcEEEEeecCCCCHHHHHHHHhcCCcEEEEc--cC------CCcHHHHHHHHh-C--CCEEEE--ecCC
Q 020013 53 DLIRKTRSLTERPFGVGVVLAFPHNENIKAILSEKVAVLQVS--WG------EYSEELVLEAHS-A--GVKVVP--QVGS 119 (332)
Q Consensus 53 ~~i~~~r~~~~~p~gvnl~~~~~~~~~~~~~~~~~~~~I~~~--~g------~~~~~~i~~~~~-~--g~~v~~--~v~s 119 (332)
+.++++++.++.|+.+.... ..+....+.+.|+|+|.++ .| .+....+..+++ . .++|+. .+.+
T Consensus 162 ~~i~~l~~~~~~pvivK~v~---s~~~a~~a~~~G~d~I~v~~~gG~~~~~g~~~~~~l~~i~~~~~~~ipvia~GGI~~ 238 (299)
T cd02809 162 DDLAWLRSQWKGPLILKGIL---TPEDALRAVDAGADGIVVSNHGGRQLDGAPATIDALPEIVAAVGGRIEVLLDGGIRR 238 (299)
T ss_pred HHHHHHHHhcCCCEEEeecC---CHHHHHHHHHCCCCEEEEcCCCCCCCCCCcCHHHHHHHHHHHhcCCCeEEEeCCCCC
Confidence 45666666666787776432 2456778889999999884 22 122244444433 2 488875 4779
Q ss_pred HHHHHHHHHcCCCEEEE
Q 020013 120 FDEARKAVNAGVDAIIV 136 (332)
Q Consensus 120 ~~~a~~a~~~g~D~ivv 136 (332)
..++.+++..|+|+|.+
T Consensus 239 ~~d~~kal~lGAd~V~i 255 (299)
T cd02809 239 GTDVLKALALGADAVLI 255 (299)
T ss_pred HHHHHHHHHcCCCEEEE
Confidence 99999999999999988
|
This family occurs in both prokaryotes and eukaryotes. Members of this family include flavocytochrome b2 (FCB2), glycolate oxidase (GOX), lactate monooxygenase (LMO), mandelate dehydrogenase (MDH), and long chain hydroxyacid oxidase (LCHAO). In green plants, glycolate oxidase is one of the key enzymes in photorespiration where it oxidizes glycolate to glyoxylate. LMO catalyzes the oxidation of L-lactate to acetate and carbon dioxide. MDH oxidizes (S)-mandelate to phenylglyoxalate. It is an enzyme in the mandelate pathway that occurs in several strains of Pseudomonas which converts (R)-mandelate to benzoate. |
| >TIGR01859 fruc_bis_ald_ fructose-1,6-bisphosphate aldolase, class II, various bacterial and amitochondriate protist | Back alignment and domain information |
|---|
Probab=91.55 E-value=9.5 Score=35.22 Aligned_cols=109 Identities=17% Similarity=0.282 Sum_probs=64.3
Q ss_pred HHhCC-CEEEEecC---CHHHHHHHHHcCCCEEEEecCCCCcccCCCCchhhhHHHHHHHhCCCCCcEEe----e-----
Q 020013 106 AHSAG-VKVVPQVG---SFDEARKAVNAGVDAIIVQGREAGGHVIGQDGLISLLPMVVDLIGDRDIPIIA----A----- 172 (332)
Q Consensus 106 ~~~~g-~~v~~~v~---s~~~a~~a~~~g~D~ivv~G~eaGGh~~~~~~~~~ll~~i~~~~~~~~iPvia----a----- 172 (332)
.++.. ++|..... +.+..+.+.+.|++.|.+++.. . .....+.+..++++.....+++|-+ .
T Consensus 69 a~~~~~vpv~lhlDH~~~~e~i~~ai~~Gf~sVmid~s~----l-~~~eni~~t~~v~~~a~~~gv~Ve~ElG~~gg~ed 143 (282)
T TIGR01859 69 IERMSIVPVALHLDHGSSYESCIKAIKAGFSSVMIDGSH----L-PFEENLALTKKVVEIAHAKGVSVEAELGTLGGIED 143 (282)
T ss_pred HHHCCCCeEEEECCCCCCHHHHHHHHHcCCCEEEECCCC----C-CHHHHHHHHHHHHHHHHHcCCEEEEeeCCCcCccc
Confidence 34456 77765533 6788888899999999887652 1 1111233334444332211333321 1
Q ss_pred ------cCcCCHHHHHHHHH-cCcceee--ecccc-ccCccCCCCHHHHHHHhcCCC
Q 020013 173 ------GGIVDARGYVAALS-LGAQGIC--LGTRF-VASEESYAHPEYKRKLVEMDK 219 (332)
Q Consensus 173 ------GGI~~~~~v~~al~-~GA~gV~--~GT~f-l~t~Es~~~~~~k~~~~~~~~ 219 (332)
....+++++.++.. .|+|.+. +||.+ ..++.....-..-+.|.+.-+
T Consensus 144 ~~~g~~~~~t~~eea~~f~~~tgvD~Lavs~Gt~hg~~~~~~~l~~e~L~~i~~~~~ 200 (282)
T TIGR01859 144 GVDEKEAELADPDEAEQFVKETGVDYLAAAIGTSHGKYKGEPGLDFERLKEIKELTN 200 (282)
T ss_pred cccccccccCCHHHHHHHHHHHCcCEEeeccCccccccCCCCccCHHHHHHHHHHhC
Confidence 22568999999996 8999888 78876 555555566555555555433
|
This model represents of one of several subtypes of the class II fructose-1,6-bisphosphate aldolase, an enzyme of glycolysis. The subtypes are split into several models to allow separation of a family of tagatose bisphosphate aldolases. This form is found in Gram-positive bacteria, a variety of Gram-negative, and in amitochondriate protists. The class II enzymes share homology with tagatose bisphosphate aldolase but not with class I aldolase. |
| >cd02808 GltS_FMN Glutamate synthase (GltS) FMN-binding domain | Back alignment and domain information |
|---|
Probab=91.53 E-value=2.9 Score=40.56 Aligned_cols=91 Identities=20% Similarity=0.226 Sum_probs=60.7
Q ss_pred CCCHHHHHHHHHHHHhhcC-CcEEEEeecCCCCHHHHHHHHhc-CCcEEEEccC----------------CCcH----HH
Q 020013 45 WEAPDYLRDLIRKTRSLTE-RPFGVGVVLAFPHNENIKAILSE-KVAVLQVSWG----------------EYSE----EL 102 (332)
Q Consensus 45 ~~~~e~~~~~i~~~r~~~~-~p~gvnl~~~~~~~~~~~~~~~~-~~~~I~~~~g----------------~~~~----~~ 102 (332)
+.+++.+.+.++++|+.++ +|+++.+..... .+.+..+++. ++|+|.+... .+.. ++
T Consensus 195 ~~~~~~l~~~I~~lr~~~~~~pV~vK~~~~~~-~~~~a~~~~~~g~D~I~VsG~~Ggtg~~~~~~~~~~g~pt~~~L~~v 273 (392)
T cd02808 195 IYSIEDLAQLIEDLREATGGKPIGVKLVAGHG-EGDIAAGVAAAGADFITIDGAEGGTGAAPLTFIDHVGLPTELGLARA 273 (392)
T ss_pred CCCHHHHHHHHHHHHHhCCCceEEEEECCCCC-HHHHHHHHHHcCCCEEEEeCCCCCCCCCcccccccCCccHHHHHHHH
Confidence 3577889999999999887 899998876532 3344444444 5999987521 1111 12
Q ss_pred HHHHHhC----CCEEEE--ecCCHHHHHHHHHcCCCEEEE
Q 020013 103 VLEAHSA----GVKVVP--QVGSFDEARKAVNAGVDAIIV 136 (332)
Q Consensus 103 i~~~~~~----g~~v~~--~v~s~~~a~~a~~~g~D~ivv 136 (332)
.+.+++. .++|+. .+.+..++.+++..|||+|-+
T Consensus 274 ~~~~~~~~~~~~i~viasGGI~~g~Dv~kalaLGAd~V~i 313 (392)
T cd02808 274 HQALVKNGLRDRVSLIASGGLRTGADVAKALALGADAVGI 313 (392)
T ss_pred HHHHHHcCCCCCCeEEEECCCCCHHHHHHHHHcCCCeeee
Confidence 2223322 466664 467889999999999999976
|
GltS is a complex iron-sulfur flavoprotein that catalyzes the reductive synthesis of L-glutamate from 2-oxoglutarate and L-glutamine via intramolecular channelling of ammonia, a reaction in the plant, yeast and bacterial pathway for ammonia assimilation. It is a multifunctional enzyme that functions through three distinct active centers, carrying out L-glutamine hydrolysis, conversion of 2-oxoglutarate into L-glutamate, and electron uptake from an electron donor. |
| >TIGR00742 yjbN tRNA dihydrouridine synthase A | Back alignment and domain information |
|---|
Probab=91.50 E-value=3.2 Score=39.03 Aligned_cols=90 Identities=11% Similarity=0.167 Sum_probs=64.5
Q ss_pred CCHHHHHHHHHHHHhhcCCcEEEEeecCCC--C-----HHHHHHHHhcCCcEEEEccCCC--------------c--HHH
Q 020013 46 EAPDYLRDLIRKTRSLTERPFGVGVVLAFP--H-----NENIKAILSEKVAVLQVSWGEY--------------S--EEL 102 (332)
Q Consensus 46 ~~~e~~~~~i~~~r~~~~~p~gvnl~~~~~--~-----~~~~~~~~~~~~~~I~~~~g~~--------------~--~~~ 102 (332)
..|+.+.++++.+++..+.|+.|.+-.... . .+.++.+.+.|++.|.+|.... + -+.
T Consensus 106 ~~p~~~~~iv~av~~~~~~PVsvKiR~g~~~~~~~~~~~~~~~~l~~~G~~~itvHgRt~~~qg~sg~~~~~~~~~~~~~ 185 (318)
T TIGR00742 106 GNADLVADCVKAMQEAVNIPVTVKHRIGIDPLDSYEFLCDFVEIVSGKGCQNFIVHARKAWLSGLSPKENREIPPLRYER 185 (318)
T ss_pred cCHHHHHHHHHHHHHHhCCCeEEEEecCCCCcchHHHHHHHHHHHHHcCCCEEEEeCCchhhcCCCccccccCCchhHHH
Confidence 468889999999998888899888754221 1 1345667789999999984320 1 134
Q ss_pred HHHHHh-C-CCEEEE--ecCCHHHHHHHHHcCCCEEEE
Q 020013 103 VLEAHS-A-GVKVVP--QVGSFDEARKAVNAGVDAIIV 136 (332)
Q Consensus 103 i~~~~~-~-g~~v~~--~v~s~~~a~~a~~~g~D~ivv 136 (332)
+.++++ . .++|+. .+.|.+++.+... |+|+|.+
T Consensus 186 i~~vk~~~~~ipVi~NGdI~s~~da~~~l~-g~dgVMi 222 (318)
T TIGR00742 186 VYQLKKDFPHLTIEINGGIKNSEQIKQHLS-HVDGVMV 222 (318)
T ss_pred HHHHHHhCCCCcEEEECCcCCHHHHHHHHh-CCCEEEE
Confidence 556655 3 688874 5779999988875 8999987
|
Members of this family show a distant relationship to alpha/beta (TIM) barrel enzymes such as dihydroorotate dehydrogenase and glycolate oxidase. |
| >cd00956 Transaldolase_FSA Transaldolase-like fructose-6-phosphate aldolases (FSA) found in bacteria and archaea, which are member of the MipB/TalC subfamily of class I aldolases | Back alignment and domain information |
|---|
Probab=91.44 E-value=6.5 Score=34.66 Aligned_cols=60 Identities=15% Similarity=0.099 Sum_probs=44.8
Q ss_pred HHHHHHHHhcCCcEEEEccCC------CcHH----HHHHHHhCCCE---EEEecCCHHHHHHHHHcCCCEEEE
Q 020013 77 NENIKAILSEKVAVLQVSWGE------YSEE----LVLEAHSAGVK---VVPQVGSFDEARKAVNAGVDAIIV 136 (332)
Q Consensus 77 ~~~~~~~~~~~~~~I~~~~g~------~~~~----~i~~~~~~g~~---v~~~v~s~~~a~~a~~~g~D~ivv 136 (332)
.++...+.++|+++|....|- ++.+ +.+.++..+.+ +++.+.++.++..+...|+|++.+
T Consensus 112 ~~Qa~~Aa~AGA~yvsP~vgR~~~~g~dg~~~i~~i~~~~~~~~~~tkil~As~r~~~ei~~a~~~Gad~vTv 184 (211)
T cd00956 112 AAQALLAAKAGATYVSPFVGRIDDLGGDGMELIREIRTIFDNYGFDTKILAASIRNPQHVIEAALAGADAITL 184 (211)
T ss_pred HHHHHHHHHcCCCEEEEecChHhhcCCCHHHHHHHHHHHHHHcCCCceEEecccCCHHHHHHHHHcCCCEEEe
Confidence 566777888999998876442 2333 34445566765 667888999999999999999987
|
FSA catalyze an aldol cleavage of fructose 6-phosphate and do not utilize fructose, fructose 1-phosphate, fructose 1,6-phosphate, or dihydroxyacetone phosphate. The enzymes belong to the transaldolase family that serves in transfer reactions in the pentose phosphate cycle, and are more distantly related to fructose 1,6-bisphosphate aldolase. |
| >PRK09454 ugpQ cytoplasmic glycerophosphodiester phosphodiesterase; Provisional | Back alignment and domain information |
|---|
Probab=91.42 E-value=1.9 Score=38.88 Aligned_cols=57 Identities=21% Similarity=0.226 Sum_probs=43.8
Q ss_pred HHhcCCcEEEEccCCCcHHHHHHHHhCCCEEEE-ecCCHHHHHHHHHcCCCEEEEecC
Q 020013 83 ILSEKVAVLQVSWGEYSEELVLEAHSAGVKVVP-QVGSFDEARKAVNAGVDAIIVQGR 139 (332)
Q Consensus 83 ~~~~~~~~I~~~~g~~~~~~i~~~~~~g~~v~~-~v~s~~~a~~a~~~g~D~ivv~G~ 139 (332)
+.+.++..+........+++++.+++.|++|+. +|.+.++++.+.+.|+|+|+..-+
T Consensus 182 ~~~~~~~~~~~~~~~~~~~~v~~~~~~g~~v~~WTvn~~~~~~~l~~~GVdgIiTD~p 239 (249)
T PRK09454 182 TRRLGCVSLHLNHKLLDEARVAALKAAGLRILVYTVNDPARARELLRWGVDCICTDRI 239 (249)
T ss_pred HHhcCCeEEecccccCCHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHcCCCEEEeCCh
Confidence 344555556554444467899999999999874 578899999999999999987544
|
|
| >cd00945 Aldolase_Class_I Class I aldolases | Back alignment and domain information |
|---|
Probab=91.41 E-value=2 Score=36.63 Aligned_cols=113 Identities=25% Similarity=0.265 Sum_probs=65.7
Q ss_pred HHHHHHHhcCCcEEEEccCCCcHHHHHHHHh--C--CCEEEEecC----------CHHHHHHHHHcCCCEEEEecCCCCc
Q 020013 78 ENIKAILSEKVAVLQVSWGEYSEELVLEAHS--A--GVKVVPQVG----------SFDEARKAVNAGVDAIIVQGREAGG 143 (332)
Q Consensus 78 ~~~~~~~~~~~~~I~~~~g~~~~~~i~~~~~--~--g~~v~~~v~----------s~~~a~~a~~~g~D~ivv~G~eaGG 143 (332)
..++.+.+.|++.|.+. | ++++.+++ . .++++..++ +.++++.+.+.|+|++.+..+- +
T Consensus 17 ~~~~~~~~~gv~gi~~~-g----~~i~~~~~~~~~~~~~v~~~v~~~~~~~~~~~~~~~a~~a~~~Gad~i~v~~~~--~ 89 (201)
T cd00945 17 KLCDEAIEYGFAAVCVN-P----GYVRLAADALAGSDVPVIVVVGFPTGLTTTEVKVAEVEEAIDLGADEIDVVINI--G 89 (201)
T ss_pred HHHHHHHHhCCcEEEEC-H----HHHHHHHHHhCCCCCeEEEEecCCCCCCcHHHHHHHHHHHHHcCCCEEEEeccH--H
Confidence 44566677788888776 3 34444332 2 367665553 2356778899999999985432 1
Q ss_pred ccCC--CCchhhhHHHHHHHhCCCCCcEEe--e-cCcCCHHHHHHH----HHcCcceeeecccc
Q 020013 144 HVIG--QDGLISLLPMVVDLIGDRDIPIIA--A-GGIVDARGYVAA----LSLGAQGICLGTRF 198 (332)
Q Consensus 144 h~~~--~~~~~~ll~~i~~~~~~~~iPvia--a-GGI~~~~~v~~a----l~~GA~gV~~GT~f 198 (332)
+... .......+.++.+.. ..++|++. . +.-.+.+.+.++ ...|+++|-..+..
T Consensus 90 ~~~~~~~~~~~~~~~~i~~~~-~~~~pv~iy~~p~~~~~~~~~~~~~~~~~~~g~~~iK~~~~~ 152 (201)
T cd00945 90 SLKEGDWEEVLEEIAAVVEAA-DGGLPLKVILETRGLKTADEIAKAARIAAEAGADFIKTSTGF 152 (201)
T ss_pred HHhCCCHHHHHHHHHHHHHHh-cCCceEEEEEECCCCCCHHHHHHHHHHHHHhCCCEEEeCCCC
Confidence 1101 223456666777764 12678663 2 222256666654 34799998766643
|
The class I aldolases use an active-site lysine which stablilzes a reaction intermediates via Schiff base formation, and have TIM beta/alpha barrel fold. The members of this family include 2-keto-3-deoxy-6-phosphogluconate (KDPG) and 2-keto-4-hydroxyglutarate (KHG) aldolases, transaldolase, dihydrodipicolinate synthase sub-family, Type I 3-dehydroquinate dehydratase, DeoC and DhnA proteins, and metal-independent fructose-1,6-bisphosphate aldolase. Although structurally similar, the class II aldolases use a different mechanism and are believed to have an independent evolutionary origin. |
| >cd07938 DRE_TIM_HMGL 3-hydroxy-3-methylglutaryl-CoA lyase, catalytic TIM barrel domain | Back alignment and domain information |
|---|
Probab=91.29 E-value=7.3 Score=35.80 Aligned_cols=113 Identities=21% Similarity=0.194 Sum_probs=69.6
Q ss_pred CCHHHHHHHHhcCCcEEEEccCCCc------------------HHHHHHHHhCCCEEEEec-----------CCHH----
Q 020013 75 PHNENIKAILSEKVAVLQVSWGEYS------------------EELVLEAHSAGVKVVPQV-----------GSFD---- 121 (332)
Q Consensus 75 ~~~~~~~~~~~~~~~~I~~~~g~~~------------------~~~i~~~~~~g~~v~~~v-----------~s~~---- 121 (332)
+..+-++.+++.+++.|.+...... .+.++..++.|..+...+ .+++
T Consensus 74 ~~~~dv~~A~~~g~~~i~i~~~~Sd~~~~~~~~~s~~~~~~~~~~~v~~ak~~G~~v~~~i~~~f~~~~~~~~~~~~~~~ 153 (274)
T cd07938 74 PNLRGAERALAAGVDEVAVFVSASETFSQKNINCSIAESLERFEPVAELAKAAGLRVRGYVSTAFGCPYEGEVPPERVAE 153 (274)
T ss_pred CCHHHHHHHHHcCcCEEEEEEecCHHHHHHHcCCCHHHHHHHHHHHHHHHHHCCCeEEEEEEeEecCCCCCCCCHHHHHH
Confidence 3456688999999998876532211 123556677888774211 1333
Q ss_pred HHHHHHHcCCCEEEEecCCCCcccCCCCchhhhHHHHHHHhCCCCCcEEeec----CcCCHHHHHHHHHcCcceee
Q 020013 122 EARKAVNAGVDAIIVQGREAGGHVIGQDGLISLLPMVVDLIGDRDIPIIAAG----GIVDARGYVAALSLGAQGIC 193 (332)
Q Consensus 122 ~a~~a~~~g~D~ivv~G~eaGGh~~~~~~~~~ll~~i~~~~~~~~iPviaaG----GI~~~~~v~~al~~GA~gV~ 193 (332)
-++.+.+.|+|.|.+--+ .|.. .+.....++..+++.++ ++|+-.-+ |.+ ..+..+++.+||+.|.
T Consensus 154 ~~~~~~~~Ga~~i~l~DT--~G~~-~P~~v~~lv~~l~~~~~--~~~i~~H~Hnd~GlA-~AN~laA~~aGa~~id 223 (274)
T cd07938 154 VAERLLDLGCDEISLGDT--IGVA-TPAQVRRLLEAVLERFP--DEKLALHFHDTRGQA-LANILAALEAGVRRFD 223 (274)
T ss_pred HHHHHHHcCCCEEEECCC--CCcc-CHHHHHHHHHHHHHHCC--CCeEEEEECCCCChH-HHHHHHHHHhCCCEEE
Confidence 345567889999887432 3432 33445677777777653 46766544 553 4666778888988654
|
3-hydroxy-3-methylglutaryl-CoA lyase (HMGL) catalyzes the cleavage of HMG-CoA to acetyl-CoA and acetoacetate, one of the terminal steps in ketone body generation and leucine degradation, and is a key enzyme in the pathway that supplies metabolic fuel to extrahepatic tissues. Mutations in HMGL cause a human autosomal recessive disorder called primary metabolic aciduria that affects ketogenesis and leucine catabolism and can be fatal due to an inability to tolerate hypoglycemia. HMGL has a TIM barrel domain with a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues that cap the core of the barrel. The cleavage of HMG-CoA requires the presence of a divalent cation like Mg2+ or Mn2+, and the reaction is thought to involve general acid/base catalysis. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropy |
| >PF00218 IGPS: Indole-3-glycerol phosphate synthase; InterPro: IPR013798 Indole-3-glycerol phosphate synthase (4 | Back alignment and domain information |
|---|
Probab=91.25 E-value=1.6 Score=39.59 Aligned_cols=71 Identities=25% Similarity=0.315 Sum_probs=50.3
Q ss_pred HHHHHHHHcCCCEEEEec--CCCCcccCCCCchhhhHHHHHHHhCCCCCcEEeecCcCCHHHHHHHHHcCcceeeecccc
Q 020013 121 DEARKAVNAGVDAIIVQG--REAGGHVIGQDGLISLLPMVVDLIGDRDIPIIAAGGIVDARGYVAALSLGAQGICLGTRF 198 (332)
Q Consensus 121 ~~a~~a~~~g~D~ivv~G--~eaGGh~~~~~~~~~ll~~i~~~~~~~~iPviaaGGI~~~~~v~~al~~GA~gV~~GT~f 198 (332)
+.+....+.|+++|-|-- .-.| +.+..+..+++.+ ++|++.===|-++.++.++..+|||+|.+=.++
T Consensus 72 ~~a~~y~~~GA~aiSVlTe~~~F~-------Gs~~dL~~v~~~~---~~PvL~KDFIid~~QI~eA~~~GADaVLLI~~~ 141 (254)
T PF00218_consen 72 EIAKAYEEAGAAAISVLTEPKFFG-------GSLEDLRAVRKAV---DLPVLRKDFIIDPYQIYEARAAGADAVLLIAAI 141 (254)
T ss_dssp HHHHHHHHTT-SEEEEE--SCCCH-------HHHHHHHHHHHHS---SS-EEEES---SHHHHHHHHHTT-SEEEEEGGG
T ss_pred HHHHHHHhcCCCEEEEECCCCCCC-------CCHHHHHHHHHHh---CCCcccccCCCCHHHHHHHHHcCCCEeehhHHh
Confidence 445666788999998721 1122 3477888888887 799998887889999999999999999998888
Q ss_pred ccC
Q 020013 199 VAS 201 (332)
Q Consensus 199 l~t 201 (332)
+..
T Consensus 142 L~~ 144 (254)
T PF00218_consen 142 LSD 144 (254)
T ss_dssp SGH
T ss_pred CCH
Confidence 755
|
1.1.48 from EC) (IGPS) catalyses the fourth step in the biosynthesis of tryptophan, the ring closure of 1-(2-carboxy-phenylamino)-1-deoxyribulose into indol-3-glycerol-phosphate. In some bacteria, IGPS is a single chain enzyme. In others, such as Escherichia coli, it is the N-terminal domain of a bifunctional enzyme that also catalyses N-(5'-phosphoribosyl)anthranilate isomerase (5.3.1.24 from EC) (PRAI) activity (see IPR001240 from INTERPRO), the third step of tryptophan biosynthesis. In fungi, IGPS is the central domain of a trifunctional enzyme that contains a PRAI C-terminal domain and a glutamine amidotransferase (2.4.2 from EC) (GATase) N-terminal domain (see IPR000991 from INTERPRO). A structure of the IGPS domain of the bifunctional enzyme from the mesophilic bacterium E. coli (eIGPS) has been compared with the monomeric indole-3-glycerol phosphate synthase from the hyperthermophilic archaeon Sulfolobus solfataricus (sIGPS). Both are single-domain (beta/alpha)8 barrel proteins, with one (eIGPS) or two (sIGPS) additional helices inserted before the first beta strand []. ; GO: 0004425 indole-3-glycerol-phosphate synthase activity; PDB: 1VC4_A 1PII_A 1JCM_P 1I4N_B 1J5T_A 3TSM_B 4FB7_A 3QJA_A 1JUL_A 2C3Z_A .... |
| >cd00377 ICL_PEPM Members of the ICL/PEPM enzyme family catalyze either P-C or C-C bond formation/cleavage | Back alignment and domain information |
|---|
Probab=91.23 E-value=1.5 Score=39.55 Aligned_cols=83 Identities=27% Similarity=0.271 Sum_probs=55.6
Q ss_pred CCCEEEEecCCHHHHHHHHHcCCCEEEEecCC---CCcccCCCCch----hhhHHHHHHHhCCCCCcEEeecCc--CCHH
Q 020013 109 AGVKVVPQVGSFDEARKAVNAGVDAIIVQGRE---AGGHVIGQDGL----ISLLPMVVDLIGDRDIPIIAAGGI--VDAR 179 (332)
Q Consensus 109 ~g~~v~~~v~s~~~a~~a~~~g~D~ivv~G~e---aGGh~~~~~~~----~~ll~~i~~~~~~~~iPviaaGGI--~~~~ 179 (332)
.+..+++.+.+.-.|+.+.+.|.|++.+.|+. +-|+.+....+ ...+..|.... ++|+++.+-. ++.+
T Consensus 8 ~~~i~~~~~~D~~sA~~~e~~G~~ai~~s~~~~~~s~G~pD~~~~~~~e~~~~~~~I~~~~---~~Pv~~D~~~G~g~~~ 84 (243)
T cd00377 8 GGPLVLPGAWDALSARLAERAGFKAIYTSGAGVAASLGLPDGGLLTLDEVLAAVRRIARAV---DLPVIADADTGYGNAL 84 (243)
T ss_pred CCcEEecCCCCHHHHHHHHHcCCCEEEeccHHHHHhcCCCCCCcCCHHHHHHHHHHHHhhc---cCCEEEEcCCCCCCHH
Confidence 35667788999999999999999999997652 22444322222 23334444444 7999998655 3433
Q ss_pred H----HHHHHHcCcceeee
Q 020013 180 G----YVAALSLGAQGICL 194 (332)
Q Consensus 180 ~----v~~al~~GA~gV~~ 194 (332)
+ +..++..|++||.+
T Consensus 85 ~~~~~v~~~~~~G~~gv~i 103 (243)
T cd00377 85 NVARTVRELEEAGAAGIHI 103 (243)
T ss_pred HHHHHHHHHHHcCCEEEEE
Confidence 3 45666789999999
|
Known members are phosphoenolpyruvate mutase (PEPM), phosphonopyruvate hydrolase (PPH), carboxyPEP mutase (CPEP mutase), oxaloacetate hydrolase (OAH), isocitrate lyase (ICL), and 2-methylisocitrate lyase (MICL). Isocitrate lyase (ICL) catalyzes the conversion of isocitrate to succinate and glyoxylate, the first committed step in the glyoxylate pathway. This carbon-conserving pathway is present in most prokaryotes, lower eukaryotes and plants, but has not been observed in vertebrates. PEP mutase (PEPM) turns phosphoenolpyruvate (PEP) into phosphonopyruvate (P-pyr), an important intermediate in the formation of organophosphonates, which function as antibiotics or play a role in pathogenesis or signaling. P-pyr can be hydrolyzed by phosphonopyruvate hydrolase (PPH) to from pyruvate and phosphate. Oxaloacetate acetylhydrolase (OAH) catalyzes the hydrolytic cleavage of oxaloacetate to |
| >cd07944 DRE_TIM_HOA_like 4-hydroxy-2-oxovalerate aldolase-like, N-terminal catalytic TIM barrel domain | Back alignment and domain information |
|---|
Probab=91.18 E-value=12 Score=34.24 Aligned_cols=111 Identities=13% Similarity=0.145 Sum_probs=67.5
Q ss_pred HHHHHHHHhcCCcEEEEccCCCc----HHHHHHHHhCCCEEEEec-----CCHH----HHHHHHHcCCCEEEEecCCCCc
Q 020013 77 NENIKAILSEKVAVLQVSWGEYS----EELVLEAHSAGVKVVPQV-----GSFD----EARKAVNAGVDAIIVQGREAGG 143 (332)
Q Consensus 77 ~~~~~~~~~~~~~~I~~~~g~~~----~~~i~~~~~~g~~v~~~v-----~s~~----~a~~a~~~g~D~ivv~G~eaGG 143 (332)
.+.++.+.+.+++.|.+.+.... .+.++.+++.|..|.... .+.+ .++.+.+.|+|.|.+--+ .|
T Consensus 85 ~~~l~~a~~~gv~~iri~~~~~~~~~~~~~i~~ak~~G~~v~~~~~~a~~~~~~~~~~~~~~~~~~g~~~i~l~DT--~G 162 (266)
T cd07944 85 IDLLEPASGSVVDMIRVAFHKHEFDEALPLIKAIKEKGYEVFFNLMAISGYSDEELLELLELVNEIKPDVFYIVDS--FG 162 (266)
T ss_pred HHHHHHHhcCCcCEEEEecccccHHHHHHHHHHHHHCCCeEEEEEEeecCCCHHHHHHHHHHHHhCCCCEEEEecC--CC
Confidence 46677788889999877643221 245667788898876543 2333 344567889999988433 33
Q ss_pred ccCCCCchhhhHHHHHHHhCCCCCcEEeec----CcCCHHHHHHHHHcCccee
Q 020013 144 HVIGQDGLISLLPMVVDLIGDRDIPIIAAG----GIVDARGYVAALSLGAQGI 192 (332)
Q Consensus 144 h~~~~~~~~~ll~~i~~~~~~~~iPviaaG----GI~~~~~v~~al~~GA~gV 192 (332)
.. .+.....+++.+++.++. ++|+-.-+ |.+ ..+..+++.+||+-|
T Consensus 163 ~~-~P~~v~~lv~~l~~~~~~-~~~i~~H~Hn~~Gla-~AN~laA~~aGa~~v 212 (266)
T cd07944 163 SM-YPEDIKRIISLLRSNLDK-DIKLGFHAHNNLQLA-LANTLEAIELGVEII 212 (266)
T ss_pred CC-CHHHHHHHHHHHHHhcCC-CceEEEEeCCCccHH-HHHHHHHHHcCCCEE
Confidence 32 233456677777776621 27774433 332 345566777887644
|
This family of bacterial enzymes is sequence-similar to 4-hydroxy-2-oxovalerate aldolase (HOA) but its exact function is unknown. This family includes the Bacteroides vulgatus Bvu_2661 protein and belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues t |
| >COG0157 NadC Nicotinate-nucleotide pyrophosphorylase [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=91.18 E-value=2.1 Score=39.15 Aligned_cols=83 Identities=18% Similarity=0.316 Sum_probs=54.8
Q ss_pred HHHHHHHHHhhcCCcEEEEeecCCCCHHHHHHHHhcCCcEEEEccCCCcHHHHHHHHh--CCCEEEEecC---CHHHHHH
Q 020013 51 LRDLIRKTRSLTERPFGVGVVLAFPHNENIKAILSEKVAVLQVSWGEYSEELVLEAHS--AGVKVVPQVG---SFDEARK 125 (332)
Q Consensus 51 ~~~~i~~~r~~~~~p~gvnl~~~~~~~~~~~~~~~~~~~~I~~~~g~~~~~~i~~~~~--~g~~v~~~v~---s~~~a~~ 125 (332)
+++.++++|+. .|+-..+-+.....+.++.++++|+|+|.+. ...|+++.+.++. ..-.++..++ +.+.+..
T Consensus 174 i~~Av~~aR~~--~~~~~kIEVEvesle~~~eAl~agaDiImLD-Nm~~e~~~~av~~l~~~~~~~lEaSGgIt~~ni~~ 250 (280)
T COG0157 174 ITEAVRRARAA--APFTKKIEVEVESLEEAEEALEAGADIIMLD-NMSPEELKEAVKLLGLAGRALLEASGGITLENIRE 250 (280)
T ss_pred HHHHHHHHHHh--CCCCceEEEEcCCHHHHHHHHHcCCCEEEec-CCCHHHHHHHHHHhccCCceEEEEeCCCCHHHHHH
Confidence 66778888775 3444444444444678889999999999996 2234444333333 2224555554 6788888
Q ss_pred HHHcCCCEEEE
Q 020013 126 AVNAGVDAIIV 136 (332)
Q Consensus 126 a~~~g~D~ivv 136 (332)
....|+|+|.+
T Consensus 251 yA~tGVD~IS~ 261 (280)
T COG0157 251 YAETGVDVISV 261 (280)
T ss_pred HhhcCCCEEEe
Confidence 88999999987
|
|
| >PRK10550 tRNA-dihydrouridine synthase C; Provisional | Back alignment and domain information |
|---|
Probab=91.16 E-value=3.9 Score=38.36 Aligned_cols=91 Identities=18% Similarity=0.242 Sum_probs=64.3
Q ss_pred CCHHHHHHHHHHHHhhc--CCcEEEEeecCC-CC---HHHHHHHHhcCCcEEEEccCC-------Cc--HHHHHHHHhC-
Q 020013 46 EAPDYLRDLIRKTRSLT--ERPFGVGVVLAF-PH---NENIKAILSEKVAVLQVSWGE-------YS--EELVLEAHSA- 109 (332)
Q Consensus 46 ~~~e~~~~~i~~~r~~~--~~p~gvnl~~~~-~~---~~~~~~~~~~~~~~I~~~~g~-------~~--~~~i~~~~~~- 109 (332)
..++.+.++++.+++.+ +.|+.|.+-... .. .+.++.+.+.|++.|.+|... ++ .+.++++++.
T Consensus 114 ~~~~~~~eiv~avr~~~~~~~pVsvKiR~g~~~~~~~~~~a~~l~~~Gvd~i~Vh~Rt~~~~y~g~~~~~~~i~~ik~~~ 193 (312)
T PRK10550 114 KDPELIYQGAKAMREAVPAHLPVTVKVRLGWDSGERKFEIADAVQQAGATELVVHGRTKEDGYRAEHINWQAIGEIRQRL 193 (312)
T ss_pred cCHHHHHHHHHHHHHhcCCCcceEEEEECCCCCchHHHHHHHHHHhcCCCEEEECCCCCccCCCCCcccHHHHHHHHhhc
Confidence 46788889999998875 478888764322 11 244566778899999998421 11 2456777664
Q ss_pred CCEEEE--ecCCHHHHHHHH-HcCCCEEEE
Q 020013 110 GVKVVP--QVGSFDEARKAV-NAGVDAIIV 136 (332)
Q Consensus 110 g~~v~~--~v~s~~~a~~a~-~~g~D~ivv 136 (332)
+++|+. .+.|++++.... ..|+|+|.+
T Consensus 194 ~iPVi~nGdI~t~~da~~~l~~~g~DgVmi 223 (312)
T PRK10550 194 TIPVIANGEIWDWQSAQQCMAITGCDAVMI 223 (312)
T ss_pred CCcEEEeCCcCCHHHHHHHHhccCCCEEEE
Confidence 678874 478999999877 468999988
|
|
| >cd04739 DHOD_like Dihydroorotate dehydrogenase (DHOD) like proteins | Back alignment and domain information |
|---|
Probab=91.10 E-value=3.1 Score=39.18 Aligned_cols=88 Identities=15% Similarity=0.112 Sum_probs=61.6
Q ss_pred HHHHHHHHHHHhhcCCcEEEEeecCCC-CHHHHHHHHhcCCcEEEEccCC--C-----------------------cHHH
Q 020013 49 DYLRDLIRKTRSLTERPFGVGVVLAFP-HNENIKAILSEKVAVLQVSWGE--Y-----------------------SEEL 102 (332)
Q Consensus 49 e~~~~~i~~~r~~~~~p~gvnl~~~~~-~~~~~~~~~~~~~~~I~~~~g~--~-----------------------~~~~ 102 (332)
+.+.+.++.+++.++.|+.|.+-.+.. ..+..+.+.+.|+|.|.++... . ..++
T Consensus 149 ~~~~eiv~~v~~~~~iPv~vKl~p~~~~~~~~a~~l~~~Gadgi~~~nt~~~~~id~~~~~~~~~~glSG~~~~~~al~~ 228 (325)
T cd04739 149 QRYLDILRAVKSAVTIPVAVKLSPFFSALAHMAKQLDAAGADGLVLFNRFYQPDIDLETLEVVPNLLLSSPAEIRLPLRW 228 (325)
T ss_pred HHHHHHHHHHHhccCCCEEEEcCCCccCHHHHHHHHHHcCCCeEEEEcCcCCCCccccccceecCCCcCCccchhHHHHH
Confidence 456788888988888999998765432 2456677788999999875211 0 0123
Q ss_pred HHHHHh-CCCEEEE--ecCCHHHHHHHHHcCCCEEEE
Q 020013 103 VLEAHS-AGVKVVP--QVGSFDEARKAVNAGVDAIIV 136 (332)
Q Consensus 103 i~~~~~-~g~~v~~--~v~s~~~a~~a~~~g~D~ivv 136 (332)
+.++++ ..++++. .+.|.+++.+.+.+|||.|-+
T Consensus 229 v~~v~~~~~ipIig~GGI~s~~Da~e~l~aGA~~Vqv 265 (325)
T cd04739 229 IAILSGRVKASLAASGGVHDAEDVVKYLLAGADVVMT 265 (325)
T ss_pred HHHHHcccCCCEEEECCCCCHHHHHHHHHcCCCeeEE
Confidence 444443 2567764 478999999999999999987
|
DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively. This subgroup has the conserved FMN binding site, but lacks some catalytic residues and may therefore be inactive. |
| >cd06556 ICL_KPHMT Members of the ICL/PEPM_KPHMT enzyme superfamily catalyze the formation and cleavage of either P-C or C-C bonds | Back alignment and domain information |
|---|
Probab=91.09 E-value=1.8 Score=38.95 Aligned_cols=83 Identities=13% Similarity=0.044 Sum_probs=53.5
Q ss_pred CCEEEEecCCHHHHHHHHHcCCCEEEEecCC---CCcccCCC-Cch---hhhHHHHHHHhCCCCCcEEeecCcC---CHH
Q 020013 110 GVKVVPQVGSFDEARKAVNAGVDAIIVQGRE---AGGHVIGQ-DGL---ISLLPMVVDLIGDRDIPIIAAGGIV---DAR 179 (332)
Q Consensus 110 g~~v~~~v~s~~~a~~a~~~g~D~ivv~G~e---aGGh~~~~-~~~---~~ll~~i~~~~~~~~iPviaaGGI~---~~~ 179 (332)
...+++.+.+.-.|+.+.++|+|+|.+.+.. .-|+.+.. .+. ...++.+.+..+ .+||++..=-+ +++
T Consensus 12 ~~i~~~~ayD~~sA~i~e~aG~dai~v~~s~~a~~~G~pD~~~vtl~em~~~~~~I~r~~~--~~pviaD~~~G~g~~~~ 89 (240)
T cd06556 12 ERFATLTAYDYSMAKQFADAGLNVMLVGDSQGMTVAGYDDTLPYPVNDVPYHVRAVRRGAP--LALIVADLPFGAYGAPT 89 (240)
T ss_pred CeEEEecCCCHHHHHHHHHcCCCEEEEChHHHHHhcCCCCCCCcCHHHHHHHHHHHHhhCC--CCCEEEeCCCCCCcCHH
Confidence 3456678889999999999999999996642 12333221 122 333344444431 37999875333 324
Q ss_pred H----HHHHHHcCcceeee
Q 020013 180 G----YVAALSLGAQGICL 194 (332)
Q Consensus 180 ~----v~~al~~GA~gV~~ 194 (332)
+ +.+++++||+||-+
T Consensus 90 ~~~~~~~~l~~aGa~gv~i 108 (240)
T cd06556 90 AAFELAKTFMRAGAAGVKI 108 (240)
T ss_pred HHHHHHHHHHHcCCcEEEE
Confidence 4 56778899999998
|
Typical members are phosphoenolpyruvate mutase (PEPM), phosphonopyruvate hydrolase (PPH), carboxyPEP mutase (CPEP mutase), oxaloacetate hydrolase (OAH), isocitrate lyase (ICL), 2-methylisocitrate lyase (MICL), and ketopantoate hydroxymethyltransferase (KPHMT). |
| >PF04476 DUF556: Protein of unknown function (DUF556); InterPro: IPR007565 The proteins in this entry are functionally uncharacterised | Back alignment and domain information |
|---|
Probab=91.08 E-value=8.9 Score=34.25 Aligned_cols=124 Identities=23% Similarity=0.228 Sum_probs=0.0
Q ss_pred eecCCCCHHHHHHHHhcCCcEEEE------ccCCCcHHHHHHHHhC---CCEEEEecC--------CHHHHHHHHHcCCC
Q 020013 70 VVLAFPHNENIKAILSEKVAVLQV------SWGEYSEELVLEAHSA---GVKVVPQVG--------SFDEARKAVNAGVD 132 (332)
Q Consensus 70 l~~~~~~~~~~~~~~~~~~~~I~~------~~g~~~~~~i~~~~~~---g~~v~~~v~--------s~~~a~~a~~~g~D 132 (332)
+.+...+.+....+++.++|+|.+ +.|-.++.+++.+++. ..++-..++ -...+..+...|+|
T Consensus 3 lLvSv~~~~EA~~a~~~gaDiID~K~P~~GaLGA~~~~vi~~i~~~~~~~~pvSAtiGDlp~~p~~~~~aa~~~a~~Gvd 82 (235)
T PF04476_consen 3 LLVSVRNVEEAEEALAGGADIIDLKNPAEGALGALFPWVIREIVAAVPGRKPVSATIGDLPMKPGTASLAALGAAATGVD 82 (235)
T ss_pred eeecCCCHHHHHHHHhCCCCEEEccCCCCCCCCCCCHHHHHHHHHHcCCCCceEEEecCCCCCchHHHHHHHHHHhcCCC
Q ss_pred EEEEecCCCCcccCCCCchhhhHHHHHHHhCC-CCCcEEeecCcCCH---------HHHHHHHHcCcceeeeccc
Q 020013 133 AIIVQGREAGGHVIGQDGLISLLPMVVDLIGD-RDIPIIAAGGIVDA---------RGYVAALSLGAQGICLGTR 197 (332)
Q Consensus 133 ~ivv~G~eaGGh~~~~~~~~~ll~~i~~~~~~-~~iPviaaGGI~~~---------~~v~~al~~GA~gV~~GT~ 197 (332)
||.+ |.-..+.. ......+..+.+.++. ..-..+.+-+.+|. +-...+.++|++|+++-|+
T Consensus 83 yvKv-Gl~g~~~~---~~a~e~l~~v~~av~~~~~~~~vVAv~yAD~~r~~~~~p~~l~~~a~~aG~~gvMlDTa 153 (235)
T PF04476_consen 83 YVKV-GLFGCKDY---DEAIEALEAVVRAVKDFDPDKKVVAVGYADAQRVGSISPLDLPEIAAEAGFDGVMLDTA 153 (235)
T ss_pred EEEE-ecCCCCCH---HHHHHHHHHHHHHHhhhCCCcEEEEEEecchhhhcCCCHHHHHHHHHHcCCCEEEEecc
|
|
| >cd08563 GDPD_TtGDE_like Glycerophosphodiester phosphodiesterase domain of Thermoanaerobacter tengcongensis and similar proteins | Back alignment and domain information |
|---|
Probab=91.01 E-value=1.8 Score=38.36 Aligned_cols=57 Identities=23% Similarity=0.283 Sum_probs=42.3
Q ss_pred HHHHhcCCcEEEEccCCCcHHHHHHHHhCCCEEEE-ecCCHHHHHHHHHcCCCEEEEe
Q 020013 81 KAILSEKVAVLQVSWGEYSEELVLEAHSAGVKVVP-QVGSFDEARKAVNAGVDAIIVQ 137 (332)
Q Consensus 81 ~~~~~~~~~~I~~~~g~~~~~~i~~~~~~g~~v~~-~v~s~~~a~~a~~~g~D~ivv~ 137 (332)
+.+...++..+..+.....++.++.+++.|.+++. .+.+.+++..+.+.|+|+|+..
T Consensus 171 ~~~~~~~~~~v~~~~~~~~~~~i~~~~~~g~~v~~Wtvn~~~~~~~~~~~GVdgi~TD 228 (230)
T cd08563 171 DYAKKIGADSLHPDFKLLTEEVVEELKKRGIPVRLWTVNEEEDMKRLKDLGVDGIITN 228 (230)
T ss_pred HHHHHhCCEEEccCchhcCHHHHHHHHHCCCEEEEEecCCHHHHHHHHHCCCCEEeCC
Confidence 33444455566554433456889999999998874 5788999999999999999853
|
This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in Thermoanaerobacter tengcongensis glycerophosphodiester phosphodiesterase (TtGDE, EC 3.1.4.46) and its uncharacterized homologs. Members in this family show high sequence similarity to Escherichia coli GP-GDE, which catalyzes the degradation of glycerophosphodiesters to produce sn-glycerol-3-phosphate (G3P) and the corresponding alcohols. Despite the fact that most of GDPD family members exist as the monomer, TtGDE can function as a dimeric unit. Its catalytic mechanism is based on the general base-acid catalysis, which is similar to that of phosphoinositide-specific phospholipases C (PI-PLCs, EC 3.1.4.11). A divalent metal cation is required for the enzyme activity of TtGDE. |
| >cd02801 DUS_like_FMN Dihydrouridine synthase-like (DUS-like) FMN-binding domain | Back alignment and domain information |
|---|
Probab=90.96 E-value=4.7 Score=35.59 Aligned_cols=90 Identities=20% Similarity=0.362 Sum_probs=61.0
Q ss_pred CHHHHHHHHHHHHhhcCCcEEEEeecCCC----CHHHHHHHHhcCCcEEEEccCC--------CcHHHHHHHHh-CCCEE
Q 020013 47 APDYLRDLIRKTRSLTERPFGVGVVLAFP----HNENIKAILSEKVAVLQVSWGE--------YSEELVLEAHS-AGVKV 113 (332)
Q Consensus 47 ~~e~~~~~i~~~r~~~~~p~gvnl~~~~~----~~~~~~~~~~~~~~~I~~~~g~--------~~~~~i~~~~~-~g~~v 113 (332)
.++.+.+.++.+++....|+.+.+-.... ..+.++.+.+.|++.|.++... ...+.++.+++ .+++|
T Consensus 107 ~~~~~~eii~~v~~~~~~~v~vk~r~~~~~~~~~~~~~~~l~~~Gvd~i~v~~~~~~~~~~~~~~~~~~~~i~~~~~ipv 186 (231)
T cd02801 107 DPELVAEIVRAVREAVPIPVTVKIRLGWDDEEETLELAKALEDAGASALTVHGRTREQRYSGPADWDYIAEIKEAVSIPV 186 (231)
T ss_pred CHHHHHHHHHHHHHhcCCCEEEEEeeccCCchHHHHHHHHHHHhCCCEEEECCCCHHHcCCCCCCHHHHHHHHhCCCCeE
Confidence 56778888999988766677765433221 1234566677899999876321 11245566655 36777
Q ss_pred EE--ecCCHHHHHHHHHc-CCCEEEE
Q 020013 114 VP--QVGSFDEARKAVNA-GVDAIIV 136 (332)
Q Consensus 114 ~~--~v~s~~~a~~a~~~-g~D~ivv 136 (332)
+. .+.+.+++.++.+. |+|+|.+
T Consensus 187 i~~Ggi~~~~d~~~~l~~~gad~V~i 212 (231)
T cd02801 187 IANGDIFSLEDALRCLEQTGVDGVMI 212 (231)
T ss_pred EEeCCCCCHHHHHHHHHhcCCCEEEE
Confidence 64 47799999999887 8999988
|
Members of this family catalyze the reduction of the 5,6-double bond of a uridine residue on tRNA. Dihydrouridine modification of tRNA is widely observed in prokaryotes and eukaryotes, and also in some archaea. Most dihydrouridines are found in the D loop of t-RNAs. The role of dihydrouridine in tRNA is currently unknown, but may increase conformational flexibility of the tRNA. It is likely that different family members have different substrate specificities, which may overlap. 1VHN, a putative flavin oxidoreductase, has high sequence similarity to DUS. The enzymatic mechanism of 1VHN is not known at the present. |
| >cd03174 DRE_TIM_metallolyase DRE-TIM metallolyase superfamily | Back alignment and domain information |
|---|
Probab=90.95 E-value=8 Score=34.78 Aligned_cols=134 Identities=17% Similarity=0.135 Sum_probs=72.3
Q ss_pred HHHHHHhcCCcEEEEccCCCc---------HHHHHHHHhCC--CEEEEecCC-HHHHHHHHHcCCCEEEEecCCCCcccC
Q 020013 79 NIKAILSEKVAVLQVSWGEYS---------EELVLEAHSAG--VKVVPQVGS-FDEARKAVNAGVDAIIVQGREAGGHVI 146 (332)
Q Consensus 79 ~~~~~~~~~~~~I~~~~g~~~---------~~~i~~~~~~g--~~v~~~v~s-~~~a~~a~~~g~D~ivv~G~eaGGh~~ 146 (332)
.++.+.+.|++.|.+.++.++ .+.++.+++.+ .++...+.+ .+.++.+.+.|+|.|-+.-...--|..
T Consensus 24 i~~~L~~~GV~~IEvg~~~~~~~~p~~~~~~~~i~~l~~~~~~~~~~~l~~~~~~~i~~a~~~g~~~i~i~~~~s~~~~~ 103 (265)
T cd03174 24 IAEALDEAGVDSIEVGSGASPKAVPQMEDDWEVLRAIRKLVPNVKLQALVRNREKGIERALEAGVDEVRIFDSASETHSR 103 (265)
T ss_pred HHHHHHHcCCCEEEeccCcCccccccCCCHHHHHHHHHhccCCcEEEEEccCchhhHHHHHhCCcCEEEEEEecCHHHHH
Confidence 345566678888888755433 35667777665 676666665 788999999999998875432112210
Q ss_pred -----CCCchhhhHHHHHHHhCCCCCcEEe----ecC-cCCHHHHH----HHHHcCcceeeeccccccCccCCCCHHHHH
Q 020013 147 -----GQDGLISLLPMVVDLIGDRDIPIIA----AGG-IVDARGYV----AALSLGAQGICLGTRFVASEESYAHPEYKR 212 (332)
Q Consensus 147 -----~~~~~~~ll~~i~~~~~~~~iPvia----aGG-I~~~~~v~----~al~~GA~gV~~GT~fl~t~Es~~~~~~k~ 212 (332)
+....+..+....+..+..++++.. +.+ ..+.+.+. .+.++|++.+.+. -|.....++.+++
T Consensus 104 ~~~~~~~~~~~~~~~~~i~~a~~~G~~v~~~~~~~~~~~~~~~~l~~~~~~~~~~g~~~i~l~----Dt~G~~~P~~v~~ 179 (265)
T cd03174 104 KNLNKSREEDLENAEEAIEAAKEAGLEVEGSLEDAFGCKTDPEYVLEVAKALEEAGADEISLK----DTVGLATPEEVAE 179 (265)
T ss_pred HHhCCCHHHHHHHHHHHHHHHHHCCCeEEEEEEeecCCCCCHHHHHHHHHHHHHcCCCEEEec----hhcCCcCHHHHHH
Confidence 1111233333333222222344333 233 22444443 4456899988863 2233344455555
Q ss_pred HHhc
Q 020013 213 KLVE 216 (332)
Q Consensus 213 ~~~~ 216 (332)
.+-.
T Consensus 180 li~~ 183 (265)
T cd03174 180 LVKA 183 (265)
T ss_pred HHHH
Confidence 5444
|
The DRE-TIM metallolyase superfamily includes 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues that cap the core of the barrel. In addition, the catalytic site includes three invariant residues - an aspartate (D), an arginine (R), and a glutamate (E) - which is the basis for the domain name "DRE-TIM". |
| >COG0191 Fba Fructose/tagatose bisphosphate aldolase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=90.94 E-value=13 Score=34.28 Aligned_cols=147 Identities=20% Similarity=0.278 Sum_probs=87.1
Q ss_pred HHHHHHHHHHHhhcCCcEEEEeecCCCCHHHHHHHHhcCCcEEEEccCCCc--------HHHHHHHHhCCCEEEEe----
Q 020013 49 DYLRDLIRKTRSLTERPFGVGVVLAFPHNENIKAILSEKVAVLQVSWGEYS--------EELVLEAHSAGVKVVPQ---- 116 (332)
Q Consensus 49 e~~~~~i~~~r~~~~~p~gvnl~~~~~~~~~~~~~~~~~~~~I~~~~g~~~--------~~~i~~~~~~g~~v~~~---- 116 (332)
+.+...+..+-+..+.|+.+++=-- ...+.+..+++.|...+=+.....| .++++.++..|+.|=..
T Consensus 61 ~~~~~~v~~~a~~~~vPV~lHlDHg-~~~~~~~~ai~~GFsSvMiDgS~~~~eENi~~tkevv~~ah~~gvsVEaElG~~ 139 (286)
T COG0191 61 DSLAHMVKALAEKYGVPVALHLDHG-ASFEDCKQAIRAGFSSVMIDGSHLPFEENIAITKEVVEFAHAYGVSVEAELGTL 139 (286)
T ss_pred HHHHHHHHHHHHHCCCCEEEECCCC-CCHHHHHHHHhcCCceEEecCCcCCHHHHHHHHHHHHHHHHHcCCcEEEEeccc
Confidence 3444444444333344544443111 1245566667777766655422222 24566677767655221
Q ss_pred ---------------cCCHHHHHHHHHc-CCCEEEE-ecCCCCcccCC-CCchhhhHHHHHHHhCCCCCcEEeec--CcC
Q 020013 117 ---------------VGSFDEARKAVNA-GVDAIIV-QGREAGGHVIG-QDGLISLLPMVVDLIGDRDIPIIAAG--GIV 176 (332)
Q Consensus 117 ---------------v~s~~~a~~a~~~-g~D~ivv-~G~eaGGh~~~-~~~~~~ll~~i~~~~~~~~iPviaaG--GI~ 176 (332)
.+++++++...+. |+|.+-+ -|.-=|=...+ +...+..|.++.+.+ ++|++.-| ||
T Consensus 140 GG~Edg~~~~~~~~~~tdp~ea~~fv~~tgiD~LA~aiGn~HG~Yk~~~p~L~~~~L~~i~~~~---~~PlVlHGgSGi- 215 (286)
T COG0191 140 GGEEDGVVLYTDPADLTDPEEALEFVERTGIDALAAAIGNVHGVYKPGNPKLDFDRLKEIQEAV---SLPLVLHGGSGI- 215 (286)
T ss_pred cCccCCcccccchhhhCCHHHHHHHHhccCcceeeeeccccccCCCCCCCCCCHHHHHHHHHHh---CCCEEEeCCCCC-
Confidence 3467788777665 6999876 23211111111 224578889999888 69998766 56
Q ss_pred CHHHHHHHHHcCcceeeecccccc
Q 020013 177 DARGYVAALSLGAQGICLGTRFVA 200 (332)
Q Consensus 177 ~~~~v~~al~~GA~gV~~GT~fl~ 200 (332)
.-+++.+++.+|..-|=+.|-+-.
T Consensus 216 p~~eI~~aI~~GV~KvNi~Td~~~ 239 (286)
T COG0191 216 PDEEIREAIKLGVAKVNIDTDLQL 239 (286)
T ss_pred CHHHHHHHHHhCceEEeeCcHHHH
Confidence 568899999999999988876443
|
|
| >TIGR00343 pyridoxal 5'-phosphate synthase, synthase subunit Pdx1 | Back alignment and domain information |
|---|
Probab=90.86 E-value=1 Score=41.33 Aligned_cols=76 Identities=24% Similarity=0.263 Sum_probs=60.5
Q ss_pred EEEecCCHHHHHHHHHcCCCEEEEec------CCCCcccCCCCchhhhHHHHHHHhCCCCCcEEeecCcCCHHHHHHHHH
Q 020013 113 VVPQVGSFDEARKAVNAGVDAIIVQG------REAGGHVIGQDGLISLLPMVVDLIGDRDIPIIAAGGIVDARGYVAALS 186 (332)
Q Consensus 113 v~~~v~s~~~a~~a~~~g~D~ivv~G------~eaGGh~~~~~~~~~ll~~i~~~~~~~~iPviaaGGI~~~~~v~~al~ 186 (332)
|+-.|.++++|+.|+++|+-+|.+-- +..||- ........+.++.+.+ ++|||+-==|+.-..+....+
T Consensus 13 vimdv~~~eqa~iae~aga~avm~le~~p~d~r~~ggv--~R~~~p~~I~~I~~~V---~iPVig~~kigh~~Ea~~L~~ 87 (287)
T TIGR00343 13 VIMDVVNPEQAKIAEEAGAVAVMALERVPADIRASGGV--ARMSDPKMIKEIMDAV---SIPVMAKVRIGHFVEAQILEA 87 (287)
T ss_pred eEEEeCCHHHHHHHHHcCceEEEeeccCchhhHhcCCe--eecCCHHHHHHHHHhC---CCCEEEEeeccHHHHHHHHHH
Confidence 56789999999999999998887621 234554 2345677889999988 899999888877788888889
Q ss_pred cCcceee
Q 020013 187 LGAQGIC 193 (332)
Q Consensus 187 ~GA~gV~ 193 (332)
+|+|-+-
T Consensus 88 ~GvDiID 94 (287)
T TIGR00343 88 LGVDYID 94 (287)
T ss_pred cCCCEEE
Confidence 9999884
|
This protein had been believed to be a singlet oxygen resistance protein. Subsequent work showed that it is a protein of pyridoxine (vitamin B6) biosynthesis, and that pyridoxine quenches the highly toxic singlet form of oxygen produced by light in the presence of certain chemicals. |
| >PF00701 DHDPS: Dihydrodipicolinate synthetase family; InterPro: IPR002220 Dihydropicolinate synthase (DHDPS) is the key enzyme in lysine biosynthesis via the diaminopimelate pathway of prokaryotes, some phycomycetes and higher plants | Back alignment and domain information |
|---|
Probab=90.73 E-value=0.9 Score=41.94 Aligned_cols=79 Identities=22% Similarity=0.292 Sum_probs=48.2
Q ss_pred HHHHHHHcCCCEEEEecCCCCcccCCCCchhhhHHHHHHHhCCCCCcEEeecCcCCHHHHH----HHHHcCcceeeeccc
Q 020013 122 EARKAVNAGVDAIIVQGREAGGHVIGQDGLISLLPMVVDLIGDRDIPIIAAGGIVDARGYV----AALSLGAQGICLGTR 197 (332)
Q Consensus 122 ~a~~a~~~g~D~ivv~G~eaGGh~~~~~~~~~ll~~i~~~~~~~~iPviaaGGI~~~~~v~----~al~~GA~gV~~GT~ 197 (332)
.++...+.|+|+|++-|..+-++......-..++..+++..+. ++||++.=|=.+-+++. .+-.+|||++++...
T Consensus 27 ~i~~l~~~Gv~gl~~~GstGE~~~Lt~~Er~~l~~~~~~~~~~-~~~vi~gv~~~st~~~i~~a~~a~~~Gad~v~v~~P 105 (289)
T PF00701_consen 27 LIDFLIEAGVDGLVVLGSTGEFYSLTDEERKELLEIVVEAAAG-RVPVIAGVGANSTEEAIELARHAQDAGADAVLVIPP 105 (289)
T ss_dssp HHHHHHHTTSSEEEESSTTTTGGGS-HHHHHHHHHHHHHHHTT-SSEEEEEEESSSHHHHHHHHHHHHHTT-SEEEEEES
T ss_pred HHHHHHHcCCCEEEECCCCcccccCCHHHHHHHHHHHHHHccC-ceEEEecCcchhHHHHHHHHHHHhhcCceEEEEecc
Confidence 4455678899999997765444432222235566667776643 68877643332444443 334589999999877
Q ss_pred cccC
Q 020013 198 FVAS 201 (332)
Q Consensus 198 fl~t 201 (332)
+...
T Consensus 106 ~~~~ 109 (289)
T PF00701_consen 106 YYFK 109 (289)
T ss_dssp TSSS
T ss_pred cccc
Confidence 6653
|
The enzyme catalyses the condensation of L-aspartate-beta- semialdehyde and pyruvate to dihydropicolinic acid via a ping-pong mechanism in which pyruvate binds to the enzyme by forming a Schiff-base with a lysine residue []. Three other proteins are structurally related to DHDPS and probably also act via a similar catalytic mechanism. These are Escherichia coli N-acetylneuraminate lyase (4.1.3.3 from EC) (gene nanA), which catalyzes the condensation of N-acetyl-D-mannosamine and pyruvate to form N-acetylneuraminate; Rhizobium meliloti (Sinorhizobium meliloti) protein mosA [], which is involved in the biosynthesis of the rhizopine 3-o-methyl-scyllo-inosamine; and E. coli hypothetical protein yjhH. The sequences of DHDPS from different sources are well-conserved. The structure takes the form of a homotetramer, in which 2 monomers are related by an approximate 2-fold symmetry []. Each monomer comprises 2 domains: an 8-fold alpha-/beta-barrel, and a C-terminal alpha-helical domain. The fold resembles that of N-acetylneuraminate lyase. The active site lysine is located in the barrel domain, and has access via 2 channels on the C-terminal side of the barrel.; GO: 0016829 lyase activity, 0008152 metabolic process; PDB: 3B4U_B 3S8H_A 3QZE_B 1XXX_F 3L21_F 3IRD_A 3A5F_B 3G0S_B 3DAQ_C 3UQN_A .... |
| >PRK02227 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=90.72 E-value=1.4 Score=39.39 Aligned_cols=82 Identities=21% Similarity=0.267 Sum_probs=56.5
Q ss_pred EEEEecCCHHHHHHHHHcCCCEEEEecCCCCcccCCCCchhhhHHHHHHHhCCCCCcEEeecC-cC-CHHHH----HHHH
Q 020013 112 KVVPQVGSFDEARKAVNAGVDAIIVQGREAGGHVIGQDGLISLLPMVVDLIGDRDIPIIAAGG-IV-DARGY----VAAL 185 (332)
Q Consensus 112 ~v~~~v~s~~~a~~a~~~g~D~ivv~G~eaGGh~~~~~~~~~ll~~i~~~~~~~~iPviaaGG-I~-~~~~v----~~al 185 (332)
+++..+.|.+||+.+.+.|+|.|=+..+..|--. ..+ ...++++++.+.. ..||=++=| +- .+..+ ..+-
T Consensus 2 ~lLvSvr~~eEA~~Al~~GaDiIDvK~P~~GaLG--A~~-p~vir~Iv~~~~~-~~pvSAtiGD~p~~p~~~~~aa~~~a 77 (238)
T PRK02227 2 RLLVSVRNLEEALEALAGGADIIDVKNPKEGSLG--ANF-PWVIREIVAAVPG-RKPVSATIGDVPYKPGTISLAALGAA 77 (238)
T ss_pred ceeeccCCHHHHHHHHhcCCCEEEccCCCCCCCC--CCC-HHHHHHHHHHhCC-CCCceeeccCCCCCchHHHHHHHHHH
Confidence 4677899999999999999999999998766542 222 3456778877753 467776444 31 23222 3333
Q ss_pred HcCcceeeeccc
Q 020013 186 SLGAQGICLGTR 197 (332)
Q Consensus 186 ~~GA~gV~~GT~ 197 (332)
..|+|-|-+|-.
T Consensus 78 ~~GvDyVKvGl~ 89 (238)
T PRK02227 78 ATGADYVKVGLY 89 (238)
T ss_pred hhCCCEEEEcCC
Confidence 479999999865
|
|
| >COG0352 ThiE Thiamine monophosphate synthase [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=90.71 E-value=4.4 Score=35.77 Aligned_cols=107 Identities=26% Similarity=0.264 Sum_probs=69.7
Q ss_pred HHHHHHHHhcCCcEEEEc-cCCCcHH---H----HHHHHhCCCEEEEecCCHHHHHHHHHcCCCEEEEecCCCCcccCCC
Q 020013 77 NENIKAILSEKVAVLQVS-WGEYSEE---L----VLEAHSAGVKVVPQVGSFDEARKAVNAGVDAIIVQGREAGGHVIGQ 148 (332)
Q Consensus 77 ~~~~~~~~~~~~~~I~~~-~g~~~~~---~----i~~~~~~g~~v~~~v~s~~~a~~a~~~g~D~ivv~G~eaGGh~~~~ 148 (332)
.+.++.+++.|++.+++= -+....+ . ...+++.+++++.. +....|.+.++|+| |.+..
T Consensus 24 ~~~ve~al~~Gv~~vQlR~K~~~~~~~~~~a~~~~~lc~~~~v~liIN----d~~dlA~~~~AdGV---------HlGq~ 90 (211)
T COG0352 24 LEWVEAALKGGVTAVQLREKDLSDEEYLALAEKLRALCQKYGVPLIIN----DRVDLALAVGADGV---------HLGQD 90 (211)
T ss_pred HHHHHHHHhCCCeEEEEecCCCChHHHHHHHHHHHHHHHHhCCeEEec----CcHHHHHhCCCCEE---------EcCCc
Confidence 367888899999999983 2222222 2 22345678887754 34556778899998 44222
Q ss_pred CchhhhHHHHHHHhCCCCCcEEeecCcCCHHHHHHHHHcCcceeeeccccccCc
Q 020013 149 DGLISLLPMVVDLIGDRDIPIIAAGGIVDARGYVAALSLGAQGICLGTRFVASE 202 (332)
Q Consensus 149 ~~~~~ll~~i~~~~~~~~iPviaaGGI~~~~~v~~al~~GA~gV~~GT~fl~t~ 202 (332)
... +...++.+ .-..+..-.+++.+.+.++.++|+|-|.+|.-|=...
T Consensus 91 D~~---~~~ar~~~---~~~~iIG~S~h~~eea~~A~~~g~DYv~~GpifpT~t 138 (211)
T COG0352 91 DMP---LAEARELL---GPGLIIGLSTHDLEEALEAEELGADYVGLGPIFPTST 138 (211)
T ss_pred ccc---hHHHHHhc---CCCCEEEeecCCHHHHHHHHhcCCCEEEECCcCCCCC
Confidence 111 23333333 2345666777799999999999999999998775443
|
|
| >cd00946 FBP_aldolase_IIA Class II Type A, Fructose-1,6-bisphosphate (FBP) aldolases | Back alignment and domain information |
|---|
Probab=90.65 E-value=16 Score=34.79 Aligned_cols=151 Identities=13% Similarity=0.027 Sum_probs=87.5
Q ss_pred HHHHHHHHHhhcCCcEEEEeecCCC-----C-------HHHHHHHHhcCCcEEEEccCCCc--------HHHHHHHHhCC
Q 020013 51 LRDLIRKTRSLTERPFGVGVVLAFP-----H-------NENIKAILSEKVAVLQVSWGEYS--------EELVLEAHSAG 110 (332)
Q Consensus 51 ~~~~i~~~r~~~~~p~gvnl~~~~~-----~-------~~~~~~~~~~~~~~I~~~~g~~~--------~~~i~~~~~~g 110 (332)
+...+..+.+..+.|+.+++=--.. . .+.+..+.+.|...|-+.....| .++++..+..|
T Consensus 75 ~~~~v~~~A~~~~VPValHLDHg~~~~~~~~~~~~~a~~~~~~~a~~~GftSVMiDgS~lp~eENI~~TkevVe~Ah~~g 154 (345)
T cd00946 75 AAHHVRSMAEHYGVPVVLHTDHCAKKLLPWFDGLLEADEEYFKQHGEPLFSSHMLDLSEEPLEENIEICKKYLERMAKIN 154 (345)
T ss_pred HHHHHHHHHHHCCCCEEEECCCCCCccchhhHHHHHHHHHHHHHhccCCCceEEeeCCCCCHHHHHHHHHHHHHHHHHcC
Confidence 4445555555557888887632211 0 12223333556777766533222 23455566556
Q ss_pred CEEE---------------------EecCCHHHHHHHHHc-----CCCEEEE-ecCCCCcccC-CCCchhhhHHHHHHH-
Q 020013 111 VKVV---------------------PQVGSFDEARKAVNA-----GVDAIIV-QGREAGGHVI-GQDGLISLLPMVVDL- 161 (332)
Q Consensus 111 ~~v~---------------------~~v~s~~~a~~a~~~-----g~D~ivv-~G~eaGGh~~-~~~~~~~ll~~i~~~- 161 (332)
+.|= ...+++++|....+. |+|.+-+ .|.-=|-... .+.-.+.++.++.+.
T Consensus 155 vsVEaElG~igg~ed~~~~~~~~~~~~yTdPeeA~~Fv~~t~~~tgvD~LAvaiGt~HG~Y~~~~p~L~~~~L~~I~~~i 234 (345)
T cd00946 155 MWLEMEIGITGGEEDGVDNSGVDNAELYTQPEDVWYVYEALSKISPNFSIAAAFGNVHGVYKPGNVKLQPEILGEHQDYV 234 (345)
T ss_pred CEEEEEecccCCcccCcccccccccccCCCHHHHHHHHHHhccCCCceeeeeeccccccCCCCCCCccCHHHHHHHHHHH
Confidence 5441 013678899887764 8898866 3331111111 122358888888443
Q ss_pred ---hC---CCCCcEEeecCcCCH-HHHHHHHHcCcceeeeccccccC
Q 020013 162 ---IG---DRDIPIIAAGGIVDA-RGYVAALSLGAQGICLGTRFVAS 201 (332)
Q Consensus 162 ---~~---~~~iPviaaGGI~~~-~~v~~al~~GA~gV~~GT~fl~t 201 (332)
+. ..++|++.-||=+.+ +++.+++..|..-|=++|.+..+
T Consensus 235 ~~~~~~~~~~~ipLVLHGgSG~~~e~i~kai~~GI~KiNi~T~l~~a 281 (345)
T cd00946 235 REKLGLADDKPLYFVFHGGSGSTKEEIREAISYGVVKMNIDTDTQWA 281 (345)
T ss_pred HHhhccccCCCCCEEEeCCCCCCHHHHHHHHHcCCeeEEeCcHHHHH
Confidence 21 025898887765444 77899999999999999987544
|
The enzyme catalyses the zinc-dependent, reversible aldol condensation of dihydroxyacetone phosphate with glyceraldehyde-3-phosphate to form fructose-1,6-bisphosphate. FBP aldolase is homodimeric and used in gluconeogenesis and glycolysis. The type A and type B Class II FBPA's differ in the presence and absence of distinct indels in the sequence that result in differing loop lengths in the structures. |
| >KOG0623 consensus Glutamine amidotransferase/cyclase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=90.61 E-value=0.66 Score=43.34 Aligned_cols=90 Identities=22% Similarity=0.329 Sum_probs=65.4
Q ss_pred HHHHHHHHHcCCCEEEEecCCCCcccCCCCchhhhHHHHHHHhCCCCCcEEeecCcCCHHHHHHHHH-cCcceeeecccc
Q 020013 120 FDEARKAVNAGVDAIIVQGREAGGHVIGQDGLISLLPMVVDLIGDRDIPIIAAGGIVDARGYVAALS-LGAQGICLGTRF 198 (332)
Q Consensus 120 ~~~a~~a~~~g~D~ivv~G~eaGGh~~~~~~~~~ll~~i~~~~~~~~iPviaaGGI~~~~~v~~al~-~GA~gV~~GT~f 198 (332)
.+.++..++.|+--|++...+.-|.. .--.+.|++.+.+.+ +||||++.|-++++...+++. .-||+ .++..+
T Consensus 444 ~ELtrAcEalGAGEiLLNCiD~DGsn--~GyDieLv~lvkdsV---~IPVIASSGAG~P~HFeEvF~kT~adA-aLaAGi 517 (541)
T KOG0623|consen 444 FELTRACEALGAGEILLNCIDCDGSN--KGYDIELVKLVKDSV---GIPVIASSGAGTPDHFEEVFEKTNADA-ALAAGI 517 (541)
T ss_pred hhHHHHHHHhCcchheeeeeccCCCC--CCcchhHHHHhhccc---CCceEecCCCCCcHHHHHHHHhcCchh-hhhccc
Confidence 45566677788888887665554442 124578898888888 899999999999999998886 45554 456667
Q ss_pred ccCccCCCCHHHHHHHhc
Q 020013 199 VASEESYAHPEYKRKLVE 216 (332)
Q Consensus 199 l~t~Es~~~~~~k~~~~~ 216 (332)
+..+|+++. ..|+.+..
T Consensus 518 FHR~e~~i~-dVKEyL~e 534 (541)
T KOG0623|consen 518 FHRKEVPIQ-DVKEYLQE 534 (541)
T ss_pred eecCccchH-HHHHHHHh
Confidence 778888764 46777664
|
|
| >TIGR03569 NeuB_NnaB N-acetylneuraminate synthase | Back alignment and domain information |
|---|
Probab=90.58 E-value=2.3 Score=40.17 Aligned_cols=74 Identities=20% Similarity=0.257 Sum_probs=59.1
Q ss_pred HHHHHHHhCCCEEEEecCCHHHHHHHHHcCCCEEEEecCCCCcccCCCCchhhhHHHHHHHhCCCCCcEEeecCcCCHHH
Q 020013 101 ELVLEAHSAGVKVVPQVGSFDEARKAVNAGVDAIIVQGREAGGHVIGQDGLISLLPMVVDLIGDRDIPIIAAGGIVDARG 180 (332)
Q Consensus 101 ~~i~~~~~~g~~v~~~v~s~~~a~~a~~~g~D~ivv~G~eaGGh~~~~~~~~~ll~~i~~~~~~~~iPviaaGGI~~~~~ 180 (332)
.+.+.+++.|+.++.++-+.+.+..+.+.|+|++-+-. +....+.||..+.+. +.|||.+=|.++.++
T Consensus 80 ~L~~~~~~~Gi~~~stpfd~~svd~l~~~~v~~~KIaS--------~~~~n~pLL~~~A~~----gkPvilStGmatl~E 147 (329)
T TIGR03569 80 ELKEYCESKGIEFLSTPFDLESADFLEDLGVPRFKIPS--------GEITNAPLLKKIARF----GKPVILSTGMATLEE 147 (329)
T ss_pred HHHHHHHHhCCcEEEEeCCHHHHHHHHhcCCCEEEECc--------ccccCHHHHHHHHhc----CCcEEEECCCCCHHH
Confidence 34556677899999999999999999999999998811 223447788887763 789999999999999
Q ss_pred HHHHHH
Q 020013 181 YVAALS 186 (332)
Q Consensus 181 v~~al~ 186 (332)
+..++.
T Consensus 148 i~~Av~ 153 (329)
T TIGR03569 148 IEAAVG 153 (329)
T ss_pred HHHHHH
Confidence 987775
|
This family is a subset of the Pfam model pfam03102 and is believed to include only authentic NeuB N-acetylneuraminate (sialic acid) synthase enzymes. The majority of the genes identified by this model are observed adjacent to both the NeuA and NeuC genes which together effect the biosynthesis of CMP-N-acetylneuraminate from UDP-N-acetylglucosamine. |
| >PRK04302 triosephosphate isomerase; Provisional | Back alignment and domain information |
|---|
Probab=90.56 E-value=11 Score=33.41 Aligned_cols=111 Identities=20% Similarity=0.293 Sum_probs=67.6
Q ss_pred CCCcHH-HHHHHHhCCCceeecC--CCCCCHHHHHHHHHHHHhhcCCcEEEEeecCCCCHHHHHHHHhcCCcEEEEc---
Q 020013 21 DISGPE-LVAAVANAGGLGLLRA--PDWEAPDYLRDLIRKTRSLTERPFGVGVVLAFPHNENIKAILSEKVAVLQVS--- 94 (332)
Q Consensus 21 g~s~~~-la~avs~aGglG~i~~--~~~~~~e~~~~~i~~~r~~~~~p~gvnl~~~~~~~~~~~~~~~~~~~~I~~~--- 94 (332)
|..+.+ .+..+.++|.=+++.. .+....+++.+.++.++++ |+..++..+..+.++.+.+.++++|..-
T Consensus 70 G~~tg~~~~~~l~~~G~~~vii~~ser~~~~~e~~~~v~~a~~~-----Gl~~I~~v~~~~~~~~~~~~~~~~I~~~p~~ 144 (223)
T PRK04302 70 GSHTGHILPEAVKDAGAVGTLINHSERRLTLADIEAVVERAKKL-----GLESVVCVNNPETSAAAAALGPDYVAVEPPE 144 (223)
T ss_pred CCchhhhHHHHHHHcCCCEEEEeccccccCHHHHHHHHHHHHHC-----CCeEEEEcCCHHHHHHHhcCCCCEEEEeCcc
Confidence 334444 4666777887777743 2235566777777777653 2222222223556666777788887531
Q ss_pred -cC-------CCcH---HHHHHHHhC--CCEEE--EecCCHHHHHHHHHcCCCEEEE
Q 020013 95 -WG-------EYSE---ELVLEAHSA--GVKVV--PQVGSFDEARKAVNAGVDAIIV 136 (332)
Q Consensus 95 -~g-------~~~~---~~i~~~~~~--g~~v~--~~v~s~~~a~~a~~~g~D~ivv 136 (332)
.| ..+. ++++.+++. +++++ ..+.+.+++..+.+.|+|++++
T Consensus 145 ~igt~~~~~~~~~~~i~~~~~~ir~~~~~~pvi~GggI~~~e~~~~~~~~gadGvlV 201 (223)
T PRK04302 145 LIGTGIPVSKAKPEVVEDAVEAVKKVNPDVKVLCGAGISTGEDVKAALELGADGVLL 201 (223)
T ss_pred ccccCCCCCcCCHHHHHHHHHHHHhccCCCEEEEECCCCCHHHHHHHHcCCCCEEEE
Confidence 11 1122 334456652 56666 4577999999999999999998
|
|
| >PF03740 PdxJ: Pyridoxal phosphate biosynthesis protein PdxJ; InterPro: IPR004569 Pyridoxal phosphate is the active form of vitamin B6 (pyridoxine or pyridoxal) | Back alignment and domain information |
|---|
Probab=90.56 E-value=2.4 Score=37.97 Aligned_cols=173 Identities=17% Similarity=0.212 Sum_probs=88.8
Q ss_pred CcHHHHHHHH-hCCCceeecCCCCCCHHHHHHHHHHHHhhcCCcEEEEeecCCCCHHHHHHHHhcCCcEEEEc-------
Q 020013 23 SGPELVAAVA-NAGGLGLLRAPDWEAPDYLRDLIRKTRSLTERPFGVGVVLAFPHNENIKAILSEKVAVLQVS------- 94 (332)
Q Consensus 23 s~~~la~avs-~aGglG~i~~~~~~~~e~~~~~i~~~r~~~~~p~gvnl~~~~~~~~~~~~~~~~~~~~I~~~------- 94 (332)
.+|-.++..+ ++|+=|+..-.+-..-.--.+.+..+++....| .|+=++. .++.++.+++.+|+.+++-
T Consensus 22 Pdpv~aA~~a~~aGAdgITvHlReDrRHI~d~Dv~~L~~~~~~~--lNlE~a~-t~e~~~ia~~~kP~~vtLVPE~r~e~ 98 (239)
T PF03740_consen 22 PDPVEAARIAEEAGADGITVHLREDRRHIQDRDVRRLRELVKTP--LNLEMAP-TEEMVDIALKVKPDQVTLVPEKREEL 98 (239)
T ss_dssp S-HHHHHHHHHHTT-SEEEEEB-TT-SSS-HHHHHHHHHH-SSE--EEEEEES-SHHHHHHHHHH--SEEEEE--SGGGB
T ss_pred CCHHHHHHHHHHcCCCEEEeccCCCcCcCCHHHHHHHHHHcccC--EEeccCC-CHHHHHHHHhCCcCEEEECCCCCCCc
Confidence 4554444444 455556553221000000123455666665666 4444432 3789999999999998763
Q ss_pred ---cCCC-------cHHHHHHHHhCCCEEEEecC-CHHHHHHHHHcCCCEEEEe-cCCCCcccCCCCchhhhHHHHHHH-
Q 020013 95 ---WGEY-------SEELVLEAHSAGVKVVPQVG-SFDEARKAVNAGVDAIIVQ-GREAGGHVIGQDGLISLLPMVVDL- 161 (332)
Q Consensus 95 ---~g~~-------~~~~i~~~~~~g~~v~~~v~-s~~~a~~a~~~g~D~ivv~-G~eaGGh~~~~~~~~~ll~~i~~~- 161 (332)
.|.. ..++++++++.|++|-.-+. ++++.+.+.+.|+|.|=+. |..+--+.......-.++..+.+.
T Consensus 99 TTegGldv~~~~~~l~~~i~~L~~~gIrvSLFiDP~~~qi~~A~~~Gad~VELhTG~yA~a~~~~~~~~~ell~~l~~aa 178 (239)
T PF03740_consen 99 TTEGGLDVAGNRDRLKPVIKRLKDAGIRVSLFIDPDPEQIEAAKELGADRVELHTGPYANAFDDAEEAEEELLERLRDAA 178 (239)
T ss_dssp STTSSB-TCGGHHHHHHHHHHHHHTT-EEEEEE-S-HHHHHHHHHTT-SEEEEETHHHHHHSSHHHHHHHHHHHHHHHHH
T ss_pred CCCcCChhhcCHHHHHHHHHHHHhCCCEEEEEeCCCHHHHHHHHHcCCCEEEEehhHhhhhcCCHHHHHHHHHHHHHHHH
Confidence 1211 23678889999999876664 6788888999999999773 221110100000111122333332
Q ss_pred --hCCCCCcEEeecCcCCHHHHHHHHHc-Ccceeeeccccc
Q 020013 162 --IGDRDIPIIAAGGIVDARGYVAALSL-GAQGICLGTRFV 199 (332)
Q Consensus 162 --~~~~~iPviaaGGI~~~~~v~~al~~-GA~gV~~GT~fl 199 (332)
....++-|=+..|+ |.+|+....+. +-.-|-+|-+++
T Consensus 179 ~~a~~lGL~VnAGHgL-~y~N~~~i~~i~~i~EvnIGHaii 218 (239)
T PF03740_consen 179 RYAHELGLGVNAGHGL-NYDNVRPIAAIPPIEEVNIGHAII 218 (239)
T ss_dssp HHHHHTT-EEEEETT---TTTHHHHHTSTTEEEEEE-HHHH
T ss_pred HHHHHcCCEEecCCCC-CHHHHHHHHhCCCceEEecCHHHH
Confidence 21236889999999 88999887764 456666665543
|
Pyridoxal 5'-phosphate (PLP) is a versatile catalyst, acting as a coenzyme in a multitude of reactions, including decarboxylation, deamination and transamination [, , ]. PLP-dependent enzymes are primarily involved in the biosynthesis of amino acids and amino acid-derived metabolites, but they are also found in the biosynthetic pathways of amino sugars and in the synthesis or catabolism of neurotransmitters; pyridoxal phosphate can also inhibit DNA polymerases and several steroid receptors []. Inadequate levels of pyridoxal phosphate in the brain can cause neurological dysfunction, particularly epilepsy []. PLP enzymes exist in their resting state as a Schiff base, the aldehyde group of PLP forming a linkage with the epsilon-amino group of an active site lysine residue on the enzyme. The alpha-amino group of the substrate displaces the lysine epsilon-amino group, in the process forming a new aldimine with the substrate. This aldimine is the common central intermediate for all PLP-catalysed reactions, enzymatic and non-enzymatic []. In Escherichia coli, the pdx genes involved in vitamin B6 have been characterised [, , ]. This entry represents PdxJ, which catalyses the condensation of 1-amino-3-oxo-4-(phosphohydroxy)propan-2-one and 1-deoxy-D-xylulose-5-phosphate to form pyridoxine-5'-phosphate. The product of the PdxJ reaction is then oxidized by PdxH to pyridoxal 5'-phosphate.; GO: 0008615 pyridoxine biosynthetic process, 0005737 cytoplasm; PDB: 3F4N_B 3O6D_A 3O6C_A 1M5W_G 1IXQ_D 1IXP_B 1IXN_A 1HO4_C 1HO1_A 1IXO_D .... |
| >cd08564 GDPD_GsGDE_like Glycerophosphodiester phosphodiesterase domain of putative Galdieria sulphuraria glycerophosphodiester phosphodiesterase and similar proteins | Back alignment and domain information |
|---|
Probab=90.54 E-value=2.3 Score=38.70 Aligned_cols=59 Identities=22% Similarity=0.302 Sum_probs=44.7
Q ss_pred HHHHHHhcCCcEEEEccCCCcHHHHHHHHhCCCEEEEe-----cCCHHHHHHHHHcCCCEEEEe
Q 020013 79 NIKAILSEKVAVLQVSWGEYSEELVLEAHSAGVKVVPQ-----VGSFDEARKAVNAGVDAIIVQ 137 (332)
Q Consensus 79 ~~~~~~~~~~~~I~~~~g~~~~~~i~~~~~~g~~v~~~-----v~s~~~a~~a~~~g~D~ivv~ 137 (332)
.+..+...++..+.++.....+++++.+++.|++++.. +.+.++++.+.+.|+|+|+..
T Consensus 192 ~~~~~~~~~~~~v~~~~~~~~~~~v~~~~~~Gl~v~~wT~~~~~n~~~~~~~l~~~GvdgiiTD 255 (265)
T cd08564 192 FLEQAKYYNATWVNFSYDFWTEEFVKKAHENGLKVMTYFDEPVNDNEEDYKVYLELGVDCICPN 255 (265)
T ss_pred HHHHHHhcCCceeeechhhhhHHHHHHHHHcCCEEEEecCCCCCCCHHHHHHHHHcCCCEEEcC
Confidence 34555556777777654334567889999999998876 467889999999999999863
|
This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in putative Galdieria sulphuraria glycerophosphodiester phosphodiesterase (GsGDE, EC 3.1.4.46) and its uncharacterized eukaryotic homologs. Members in this family show high sequence similarity to Escherichia coli GP-GDE, which catalyzes the degradation of glycerophosphodiesters to produce sn-glycerol-3-phosphate (G3P) and the corresponding alcohols. |
| >TIGR03217 4OH_2_O_val_ald 4-hydroxy-2-oxovalerate aldolase | Back alignment and domain information |
|---|
Probab=90.53 E-value=16 Score=34.62 Aligned_cols=113 Identities=16% Similarity=0.182 Sum_probs=71.6
Q ss_pred CHHHHHHHHhcCCcEEEEccCCC----cHHHHHHHHhCCCEEEEec-----CCHH----HHHHHHHcCCCEEEEecCCCC
Q 020013 76 HNENIKAILSEKVAVLQVSWGEY----SEELVLEAHSAGVKVVPQV-----GSFD----EARKAVNAGVDAIIVQGREAG 142 (332)
Q Consensus 76 ~~~~~~~~~~~~~~~I~~~~g~~----~~~~i~~~~~~g~~v~~~v-----~s~~----~a~~a~~~g~D~ivv~G~eaG 142 (332)
..+.++.+.+.+++.|.+..... ..+.++.+++.|..+.... .+++ .++.+.+.|+|.|.+.- ..
T Consensus 89 ~~~dl~~a~~~gvd~iri~~~~~e~d~~~~~i~~ak~~G~~v~~~l~~s~~~~~e~l~~~a~~~~~~Ga~~i~i~D--T~ 166 (333)
T TIGR03217 89 TVHDLKAAYDAGARTVRVATHCTEADVSEQHIGMARELGMDTVGFLMMSHMTPPEKLAEQAKLMESYGADCVYIVD--SA 166 (333)
T ss_pred CHHHHHHHHHCCCCEEEEEeccchHHHHHHHHHHHHHcCCeEEEEEEcccCCCHHHHHHHHHHHHhcCCCEEEEcc--CC
Confidence 35678899999999987653322 2356777888898876443 2443 34566788999988743 34
Q ss_pred cccCCCCchhhhHHHHHHHhCCCCCcEEeec----CcCCHHHHHHHHHcCcceee
Q 020013 143 GHVIGQDGLISLLPMVVDLIGDRDIPIIAAG----GIVDARGYVAALSLGAQGIC 193 (332)
Q Consensus 143 Gh~~~~~~~~~ll~~i~~~~~~~~iPviaaG----GI~~~~~v~~al~~GA~gV~ 193 (332)
|.. .+.....++..+++.++. ++||-.-+ |.+ -.|..+++.+||+-|-
T Consensus 167 G~~-~P~~v~~~v~~l~~~l~~-~i~ig~H~HnnlGla-~ANslaAi~aGa~~iD 218 (333)
T TIGR03217 167 GAM-LPDDVRDRVRALKAVLKP-ETQVGFHAHHNLSLA-VANSIAAIEAGATRID 218 (333)
T ss_pred CCC-CHHHHHHHHHHHHHhCCC-CceEEEEeCCCCchH-HHHHHHHHHhCCCEEE
Confidence 443 333456677777776631 37775544 342 3456677889988654
|
Members of this protein family are 4-hydroxy-2-oxovalerate aldolase, also called 4-hydroxy-2-ketovalerate aldolase and 2-oxo-4-hydroxypentanoate aldolase. This enzyme, part of the pathway for the meta-cleavage of catechol, produces pyruvate and acetaldehyde. Acetaldehyde is then converted by acetaldehyde dehydrogenase (acylating) (DmpF; EC 1.2.1.10) to acetyl-CoA. The two enzymes are tightly associated. |
| >PRK05283 deoxyribose-phosphate aldolase; Provisional | Back alignment and domain information |
|---|
Probab=90.50 E-value=0.71 Score=41.93 Aligned_cols=108 Identities=21% Similarity=0.267 Sum_probs=60.3
Q ss_pred HHHHHhcCCcEEEEcc-------CCCc--HHHHHHHHh-----CCCEEEEecC--CHH-HH----HHHHHcCCCEEEE-e
Q 020013 80 IKAILSEKVAVLQVSW-------GEYS--EELVLEAHS-----AGVKVVPQVG--SFD-EA----RKAVNAGVDAIIV-Q 137 (332)
Q Consensus 80 ~~~~~~~~~~~I~~~~-------g~~~--~~~i~~~~~-----~g~~v~~~v~--s~~-~a----~~a~~~g~D~ivv-~ 137 (332)
.+.+++.|++=|.+-. |+.. .+.++.+.+ .-+|||.... +.+ +. +.+.++|+|+|.- .
T Consensus 89 a~~Ai~~GAdEiD~Vinig~lk~g~~~~v~~ei~~v~~~~~~~~~lKVIlEt~~L~~ee~i~~a~~~a~~aGADFVKTST 168 (257)
T PRK05283 89 TRAAIAYGADEVDVVFPYRALMAGNEQVGFELVKACKEACAANVLLKVIIETGELKDEALIRKASEIAIKAGADFIKTST 168 (257)
T ss_pred HHHHHHcCCCEEeeeccHHHHhCCcHHHHHHHHHHHHHHhCCCceEEEEEeccccCCHHHHHHHHHHHHHhCCCEEEcCC
Confidence 4567778887765421 2211 122233332 1257776543 323 23 3467899999986 4
Q ss_pred cCCCCcccCCCCchhhhHHHHHHHhC-CCCCcEEeecCcCCHHHHHHHHHcCcc
Q 020013 138 GREAGGHVIGQDGLISLLPMVVDLIG-DRDIPIIAAGGIVDARGYVAALSLGAQ 190 (332)
Q Consensus 138 G~eaGGh~~~~~~~~~ll~~i~~~~~-~~~iPviaaGGI~~~~~v~~al~~GA~ 190 (332)
|+..+|- ......++.+...... ..++-|=++|||.|.+++.+++.+|.+
T Consensus 169 Gf~~~gA---t~edv~lm~~~i~~~~~~~~vgIKAsGGIrt~~~A~~~i~ag~~ 219 (257)
T PRK05283 169 GKVPVNA---TLEAARIMLEVIRDMGVAKTVGFKPAGGVRTAEDAAQYLALADE 219 (257)
T ss_pred CCCCCCC---CHHHHHHHHHHHHhcccCCCeeEEccCCCCCHHHHHHHHHHHHH
Confidence 5432221 1223334433322110 125789999999999999999998754
|
|
| >PRK14905 triosephosphate isomerase/PTS system glucose/sucrose-specific transporter subunit IIB; Provisional | Back alignment and domain information |
|---|
Probab=90.50 E-value=2.8 Score=40.08 Aligned_cols=120 Identities=17% Similarity=0.248 Sum_probs=68.1
Q ss_pred HHHHHHHhcCCcEEEEc-------cCCCcH---HHHHHHHhCCCEEEEecCCHHH------HHH--------HHHcCC--
Q 020013 78 ENIKAILSEKVAVLQVS-------WGEYSE---ELVLEAHSAGVKVVPQVGSFDE------ARK--------AVNAGV-- 131 (332)
Q Consensus 78 ~~~~~~~~~~~~~I~~~-------~g~~~~---~~i~~~~~~g~~v~~~v~s~~~------a~~--------a~~~g~-- 131 (332)
-..+.+.+.|++++.++ |++... .-++.+.+.|+..+..++...+ ... .+ .++
T Consensus 86 VS~~mL~d~G~~~viiGHSERR~~f~Etd~~i~~Kv~~al~~gl~pIvCiGE~~eer~~g~~~~v~~~Ql~~~l-~~v~~ 164 (355)
T PRK14905 86 ISPLMLKELGIELVMIGHSERRHVLKETDQEENEKVLAALKHGFITLLCIGETLEQKNYNISDEVLRTQLKIGL-HGVSA 164 (355)
T ss_pred CCHHHHHHcCCCEEEECcccccCcccccHHHHHHHHHHHHHCCCEEEEEcCCcHHHHhccCHHHHHHHHHHHHH-ccCCH
Confidence 34667888999999875 343221 1233456789988887775332 111 11 111
Q ss_pred ----CEEEE-ecCCC-C--cccCCCC---chhhhHHHH-HHHhC--CCCCcEEeecCcCCHHHHHHHHH-cCcceeeecc
Q 020013 132 ----DAIIV-QGREA-G--GHVIGQD---GLISLLPMV-VDLIG--DRDIPIIAAGGIVDARGYVAALS-LGAQGICLGT 196 (332)
Q Consensus 132 ----D~ivv-~G~ea-G--Gh~~~~~---~~~~ll~~i-~~~~~--~~~iPviaaGGI~~~~~v~~al~-~GA~gV~~GT 196 (332)
..+++ +...+ | |....+. .....+++. .+.+. ..++||+..|+| +++++.+.+. .+.||+.+|+
T Consensus 165 ~~~~~~vIAYEPvWAIGTgg~~as~~~~~~~~~~Ir~~l~~~~~~~~~~v~ILYGGSV-~~~N~~~l~~~~~iDG~LVG~ 243 (355)
T PRK14905 165 EQLPHLFIAYEPVWAIGEGGIPASAEYADEKHAIIKQCLFELFAEESKKIPVLYGGSV-NLENANELIMKPHIDGLFIGR 243 (355)
T ss_pred hhcCceEEEECChHHhCCCCCCCCHHHHHHHHHHHHHHHHHHhccccCceeEEEeCcC-CHHHHHHHhcCCCCCEEEech
Confidence 13333 44333 2 2221110 123334432 22221 125899999999 7899888775 6899999999
Q ss_pred ccc
Q 020013 197 RFV 199 (332)
Q Consensus 197 ~fl 199 (332)
+-+
T Consensus 244 asl 246 (355)
T PRK14905 244 SAW 246 (355)
T ss_pred hhc
Confidence 977
|
|
| >COG0826 Collagenase and related proteases [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=90.50 E-value=10 Score=36.10 Aligned_cols=112 Identities=26% Similarity=0.256 Sum_probs=0.0
Q ss_pred eecCCCCHHHHHHHHhcCCcEEEEccC---------CCcH----HHHHHHHhCCCEEEEecCC----------HHHHHHH
Q 020013 70 VVLAFPHNENIKAILSEKVAVLQVSWG---------EYSE----ELVLEAHSAGVKVVPQVGS----------FDEARKA 126 (332)
Q Consensus 70 l~~~~~~~~~~~~~~~~~~~~I~~~~g---------~~~~----~~i~~~~~~g~~v~~~v~s----------~~~a~~a 126 (332)
+..+....+.+..+++.|+|.|.++.- .++. +.++.+++.|.++...+++ .+....+
T Consensus 9 ll~pag~l~~l~~ai~~GADaVY~G~~~~~~R~~a~nfs~~~l~e~i~~ah~~gkk~~V~~N~~~~~~~~~~~~~~l~~l 88 (347)
T COG0826 9 LLAPAGNLEDLKAAIAAGADAVYIGEKEFGLRRRALNFSVEDLAEAVELAHSAGKKVYVAVNTLLHNDELETLERYLDRL 88 (347)
T ss_pred eecCCCCHHHHHHHHHcCCCEEEeCCcccccccccccCCHHHHHHHHHHHHHcCCeEEEEeccccccchhhHHHHHHHHH
Q ss_pred HHcCCCEEEEecCCCCcccCCCCchhhhHHHHHHHhCCCCCcEEeecCcCCHHHHHHHHHcCcceeee
Q 020013 127 VNAGVDAIIVQGREAGGHVIGQDGLISLLPMVVDLIGDRDIPIIAAGGIVDARGYVAALSLGAQGICL 194 (332)
Q Consensus 127 ~~~g~D~ivv~G~eaGGh~~~~~~~~~ll~~i~~~~~~~~iPviaaGGI~~~~~v~~al~~GA~gV~~ 194 (332)
.+.|+|+|++ .+..++.-+++..+...+-+=..--+.|++.+.-+-.+|+.-+++
T Consensus 89 ~e~GvDaviv-------------~Dpg~i~l~~e~~p~l~ih~S~q~~v~N~~~~~f~~~~G~~rvVl 143 (347)
T COG0826 89 VELGVDAVIV-------------ADPGLIMLARERGPDLPIHVSTQANVTNAETAKFWKELGAKRVVL 143 (347)
T ss_pred HHcCCCEEEE-------------cCHHHHHHHHHhCCCCcEEEeeeEecCCHHHHHHHHHcCCEEEEe
|
|
| >PRK11815 tRNA-dihydrouridine synthase A; Provisional | Back alignment and domain information |
|---|
Probab=90.49 E-value=5.4 Score=37.76 Aligned_cols=90 Identities=11% Similarity=0.216 Sum_probs=62.8
Q ss_pred CCHHHHHHHHHHHHhhcCCcEEEEeec--CCCC-----HHHHHHHHhcCCcEEEEccCC------C----------cHHH
Q 020013 46 EAPDYLRDLIRKTRSLTERPFGVGVVL--AFPH-----NENIKAILSEKVAVLQVSWGE------Y----------SEEL 102 (332)
Q Consensus 46 ~~~e~~~~~i~~~r~~~~~p~gvnl~~--~~~~-----~~~~~~~~~~~~~~I~~~~g~------~----------~~~~ 102 (332)
..++.+.++++.+++..+.|+.+.+-+ .... .+.++.+.+.|++.+.+|... . ..++
T Consensus 116 ~~p~~~~eiv~avr~~v~~pVsvKiR~g~~~~~t~~~~~~~~~~l~~aG~d~i~vh~Rt~~~~g~~~~~~~~~~~~~~~~ 195 (333)
T PRK11815 116 AEPELVADCVKAMKDAVSIPVTVKHRIGIDDQDSYEFLCDFVDTVAEAGCDTFIVHARKAWLKGLSPKENREIPPLDYDR 195 (333)
T ss_pred cCHHHHHHHHHHHHHHcCCceEEEEEeeeCCCcCHHHHHHHHHHHHHhCCCEEEEcCCchhhcCCCccccccCCCcCHHH
Confidence 357788899999988778888875422 1111 234566778899999987321 0 1345
Q ss_pred HHHHHhC--CCEEEE--ecCCHHHHHHHHHcCCCEEEE
Q 020013 103 VLEAHSA--GVKVVP--QVGSFDEARKAVNAGVDAIIV 136 (332)
Q Consensus 103 i~~~~~~--g~~v~~--~v~s~~~a~~a~~~g~D~ivv 136 (332)
++++++. .++|+. .+.|++++.++.+ ++|+|.+
T Consensus 196 i~~v~~~~~~iPVI~nGgI~s~eda~~~l~-~aDgVmI 232 (333)
T PRK11815 196 VYRLKRDFPHLTIEINGGIKTLEEAKEHLQ-HVDGVMI 232 (333)
T ss_pred HHHHHHhCCCCeEEEECCcCCHHHHHHHHh-cCCEEEE
Confidence 6677663 678874 5789999998887 6999988
|
|
| >PRK00043 thiE thiamine-phosphate pyrophosphorylase; Reviewed | Back alignment and domain information |
|---|
Probab=90.41 E-value=5.9 Score=34.38 Aligned_cols=104 Identities=20% Similarity=0.182 Sum_probs=61.7
Q ss_pred HHHHHHHHhcCCcEEEEccCCCc-HHH---HHHH----HhCCCEEEEecCCHHHHHHHHHcCCCEEEEecCCCCcccCCC
Q 020013 77 NENIKAILSEKVAVLQVSWGEYS-EEL---VLEA----HSAGVKVVPQVGSFDEARKAVNAGVDAIIVQGREAGGHVIGQ 148 (332)
Q Consensus 77 ~~~~~~~~~~~~~~I~~~~g~~~-~~~---i~~~----~~~g~~v~~~v~s~~~a~~a~~~g~D~ivv~G~eaGGh~~~~ 148 (332)
.+.++.+.+.|++.|++...+.+ .++ ++.+ +..|++++.. +....+.+.|+|+|.+... .
T Consensus 24 ~~~~~~~~~~gv~~v~lr~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~----~~~~~a~~~gad~vh~~~~--------~ 91 (212)
T PRK00043 24 LEVVEAALEGGVTLVQLREKGLDTRERLELARALKELCRRYGVPLIVN----DRVDLALAVGADGVHLGQD--------D 91 (212)
T ss_pred HHHHHHHHhcCCCEEEEeCCCCCHHHHHHHHHHHHHHHHHhCCeEEEe----ChHHHHHHcCCCEEecCcc--------c
Confidence 34677788889999988533222 222 2222 3457777653 4567788899999876211 0
Q ss_pred CchhhhHHHHHHHhCCCCCcEEeecCcCCHHHHHHHHHcCcceeeeccccc
Q 020013 149 DGLISLLPMVVDLIGDRDIPIIAAGGIVDARGYVAALSLGAQGICLGTRFV 199 (332)
Q Consensus 149 ~~~~~ll~~i~~~~~~~~iPviaaGGI~~~~~v~~al~~GA~gV~~GT~fl 199 (332)
.. ...+.... +..++..--+.|.+++.++...|+|.|.+|.-|-
T Consensus 92 -~~---~~~~~~~~---~~~~~~g~~~~t~~e~~~a~~~gaD~v~~~~~~~ 135 (212)
T PRK00043 92 -LP---VADARALL---GPDAIIGLSTHTLEEAAAALAAGADYVGVGPIFP 135 (212)
T ss_pred -CC---HHHHHHHc---CCCCEEEEeCCCHHHHHHHhHcCCCEEEECCccC
Confidence 11 11222221 1222223335688899999999999999885443
|
|
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
| ID | Alignment Graph | Length |
Definition |
E-value | |
| Query | 332 | ||||
| 2z6j_A | 332 | Crystal Structure Of S. Pneumoniae Enoyl-acyl Carri | 3e-27 | ||
| 3bo9_A | 326 | Crystal Structure Of Putative Nitroalkan Dioxygenas | 3e-27 | ||
| 2gjl_A | 328 | Crystal Structure Of 2-Nitropropane Dioxygenase Len | 9e-23 | ||
| 2z6i_A | 332 | Crystal Structure Of S. Pneumoniae Enoyl-acyl Carri | 1e-22 | ||
| 3bw4_A | 369 | Crystal Structures And Site-Directed Mutagenesis St | 1e-16 | ||
| 3bw2_A | 369 | Crystal Structures And Site-Directed Mutagenesis St | 3e-16 | ||
| 3bw3_A | 369 | Crystal Structures And Site-Directed Mutagenesis St | 3e-15 |
| >pdb|2Z6J|A Chain A, Crystal Structure Of S. Pneumoniae Enoyl-acyl Carrier Protein Reductase (fabk) In Complex With An Inhibitor Length = 332 | Back alignment and structure |
|
| >pdb|3BO9|A Chain A, Crystal Structure Of Putative Nitroalkan Dioxygenase (Tm0800) From Thermotoga Maritima At 2.71 A Resolution Length = 326 | Back alignment and structure |
|
| >pdb|2GJL|A Chain A, Crystal Structure Of 2-Nitropropane Dioxygenase Length = 328 | Back alignment and structure |
|
| >pdb|2Z6I|A Chain A, Crystal Structure Of S. Pneumoniae Enoyl-acyl Carrier Protein Reductase (fabk) Length = 332 | Back alignment and structure |
|
| >pdb|3BW4|A Chain A, Crystal Structures And Site-Directed Mutagenesis Study Of Nitroalkane Oxidase From Streptomyces Ansochromogenes Length = 369 | Back alignment and structure |
|
| >pdb|3BW2|A Chain A, Crystal Structures And Site-Directed Mutagenesis Study Of Nitroalkane Oxidase From Streptomyces Ansochromogenes Length = 369 | Back alignment and structure |
|
| >pdb|3BW3|A Chain A, Crystal Structures And Site-Directed Mutagenesis Study Of Nitroalkane Oxidase From Streptomyces Ansochromogenes Length = 369 | Back alignment and structure |
|
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >2z6i_A Trans-2-enoyl-ACP reductase II; fatty acid synthesis, antibiotics, oxidoreductase, flavoprotein; HET: FMN; 1.70A {Streptococcus pneumoniae} PDB: 2z6j_A* Length = 332 | Back alignment and structure |
|---|
Score = 301 bits (772), Expect = e-101
Identities = 98/328 (29%), Positives = 161/328 (49%), Gaps = 19/328 (5%)
Query: 6 MLGFEYGIVQAPLGPDISGPELVAAVANAGGLGLLRAPDWEAPDYLRDLIRKTRSLTERP 65
+L +Y I Q + ++ +L AV+ AGGLG++ + + ++ I K +SLT++P
Sbjct: 8 LLKIDYPIFQGGMAW-VADGDLAGAVSKAGGLGIIGGGNAP-KEVVKANIDKIKSLTDKP 65
Query: 66 FGVGVVLAFPH-NENIKAILSEKVAVLQVSWGEYSEELVLEAHSAGVKVVPQVGSFDEAR 124
FGV ++L P + + ++ E V V+ G + + H AG+ V+P V S A+
Sbjct: 66 FGVNIMLLSPFVEDIVDLVIEEGVKVVTTGAGN-PSKYMERFHEAGIIVIPVVPSVALAK 124
Query: 125 KAVNAGVDAIIVQGREAGGHVIGQDGLISLLPMVVDLIGDRDIPIIAAGGIVDARGYVAA 184
+ G DA+I +G EAGGH IG+ ++L+ V I IP+IAAGGI D G A
Sbjct: 125 RMEKIGADAVIAEGMEAGGH-IGKLTTMTLVRQVATAI---SIPVIAAGGIADGEGAAAG 180
Query: 185 LSLGAQGICLGTRFVASEESYAHPEYKRKLVEMDKTEYTDVFGRARWPGAPHRVLQTPFF 244
LGA+ + +GTRFV ++ES AHP YK K+++ + T + G R ++
Sbjct: 181 FMLGAEAVQVGTRFVVAKESNAHPNYKEKILKARDIDTTISA---QHFGHAVRAIKNQLT 237
Query: 245 SNWKNIPAHENEVNQPIIGRSTIHGIEKKIHRLAGTVPNVTTTGDIDSMVMFAGEGVGLI 304
+++ + P +E AG + GD+D + AG+ GL+
Sbjct: 238 RDFELAEKDAFKQEDP--------DLEIFEQMGAGALAKAVVHGDVDGGSVMAGQIAGLV 289
Query: 305 REILPAGEVVKQLVEGAQLLVHTKFSGL 332
+ A E++K L GA + + S
Sbjct: 290 SKEETAEEILKDLYYGAAKKIQEEASRW 317
|
| >3bo9_A Putative nitroalkan dioxygenase; TM0800, structural genomics center for structural genomics, JCSG, protein structure INI PSI-2; HET: MSE 2PE; 2.71A {Thermotoga maritima MSB8} Length = 326 | Back alignment and structure |
|---|
Score = 294 bits (754), Expect = 6e-99
Identities = 107/318 (33%), Positives = 159/318 (50%), Gaps = 26/318 (8%)
Query: 6 MLGFEYGIVQAPLGPDISGPELVAAVANAGGLGLLRAPDWEAPDYLRDLIRKTRSLTERP 65
+L E+ I+ + P L AAV+ AGGLG++ + + PD LR I + R T++P
Sbjct: 22 LLEIEHPILMGGMAW-AGTPTLAAAVSEAGGLGIIGSGAMK-PDDLRKAISELRQKTDKP 79
Query: 66 FGVGVVLAFPH-NENIKAILSEKVAVLQVSWGEYSEELVLEAHSAGVKVVPQVGSFDEAR 124
FGV ++L P ++ +K + EKV V+ G + + E G KV+P V S AR
Sbjct: 80 FGVNIILVSPWADDLVKVCIEEKVPVVTFGAGN-PTKYIRELKENGTKVIPVVASDSLAR 138
Query: 125 KAVNAGVDAIIVQGREAGGHVIGQDGLISLLPMVVDLIGDRDIPIIAAGGIVDARGYVAA 184
AG DA+I +G E+GGH IG+ L+ V + +IP+IAAGGI D RG AA
Sbjct: 139 MVERAGADAVIAEGMESGGH-IGEVTTFVLVNKVSRSV---NIPVIAAGGIADGRGMAAA 194
Query: 185 LSLGAQGICLGTRFVASEESYAHPEYKRKLVEMDKTEYTDVFGRARWPGAPHRVLQTPFF 244
+LGA+ + +GTRFVAS ES HP YK K+V K D G P RVL+TPF
Sbjct: 195 FALGAEAVQMGTRFVASVESDVHPVYKEKIV---KASIRDTVVTGAKLGHPARVLRTPFA 251
Query: 245 SNWKNIPAHENEVNQPIIGRSTIHGIEKKIHRLAGTVPNVTTTGDIDSMVMFAGEGVGLI 304
+ + + L G++ GD++ G+ GLI
Sbjct: 252 RKIQEMEF---------------ENPMQAEEMLVGSLRRAVVEGDLERGSFMVGQSAGLI 296
Query: 305 REILPAGEVVKQLVEGAQ 322
EI P ++++ +++ +
Sbjct: 297 DEIKPVKQIIEDILKEFK 314
|
| >2gjl_A Hypothetical protein PA1024; 2-nitropropane dioxygenase, 2-nitropropane, FMN, oxidoreduct; HET: FMN; 2.00A {Pseudomonas aeruginosa PAO1} PDB: 2gjn_A* Length = 328 | Back alignment and structure |
|---|
Score = 286 bits (734), Expect = 6e-96
Identities = 105/334 (31%), Positives = 152/334 (45%), Gaps = 27/334 (8%)
Query: 6 MLGFEYGIVQAPLGPDISGPELVAAVANAGGLGLLRAPDWEAPDYLRDLIRKTRSLTERP 65
G E+ I+Q + + E+ AAVANAGGL L A +P+ L I + R LT+RP
Sbjct: 11 TFGVEHPIMQGGMQW-VGRAEMAAAVANAGGLATLSALTQPSPEALAAEIARCRELTDRP 69
Query: 66 FGVGVVLAFPHN-----ENIKAILSEKVAVLQVSWGEYSEELVLEAHSAGVKVVPQVGSF 120
FGV + L E AI+ + V++ + + E + E GVKV+ + +
Sbjct: 70 FGVNLTLLPTQKPVPYAEYRAAIIEAGIRVVETAGND-PGEHIAEFRRHGVKVIHKCTAV 128
Query: 121 DEARKAVNAGVDAIIVQGREAGGHVIGQD-GLISLLPMVVDLIGDRDIPIIAAGGIVDAR 179
A KA GVDA+ + G E GH D + LLP + + +PIIA+GG D R
Sbjct: 129 RHALKAERLGVDAVSIDGFECAGHPGEDDIPGLVLLPAAANRL---RVPIIASGGFADGR 185
Query: 180 GYVAALSLGAQGICLGTRFVASEESYAHPEYKRKLVEMDKTEYTDVFGRARWPGAPHRVL 239
G VAAL+LGA I +GTRF+A+ E HP K + D+ TD+ R+ RV
Sbjct: 186 GLVAALALGADAINMGTRFLATRECPIHPAVKAAIRAADERS-TDLIMRS--LRNTARVA 242
Query: 240 QTPFFSNWKNIPAHENEVNQPIIGRSTIHGIEKKIHRLAGTVP-NVTTTGDIDSMVMFAG 298
+ I A G ++G V GD D + AG
Sbjct: 243 RNAISQEVLAIEARGGA------------GYADIAALVSGQRGRQVYQQGDTDLGIWSAG 290
Query: 299 EGVGLIREILPAGEVVKQLVEGAQLLVHTKFSGL 332
GLI + E+++ +VE A+ LV + G+
Sbjct: 291 MVQGLIDDEPACAELLRDIVEQARQLVRQRLEGM 324
|
| >3bw2_A 2-nitropropane dioxygenase; TIM barrel, oxidoreductase; HET: FMN; 2.10A {Streptomyces ansochromogenes} PDB: 3bw4_A* 3bw3_A* Length = 369 | Back alignment and structure |
|---|
Score = 227 bits (580), Expect = 3e-72
Identities = 105/362 (29%), Positives = 150/362 (41%), Gaps = 73/362 (20%)
Query: 9 FEYGIVQAPLGPDISGPELVAAVANAGGLGLLRAPDWEAPDYLRDLIRKTRSLTERPFGV 68
F IVQAP+ +S P+L AAV AGGLG L A ++ D + I++ R LT RPFGV
Sbjct: 9 FPLPIVQAPMAGGVSVPQLAAAVCEAGGLGFL-AAGYKTADGMYQEIKRLRGLTGRPFGV 67
Query: 69 GVVLAFPH------------------------------------NENIKAILSEKVAVLQ 92
V + P + + +L + V V+
Sbjct: 68 NVFMPQPELAESGAVEVYAHQLAGEAAWYETELGDPDGGRDDGYDAKLAVLLDDPVPVVS 127
Query: 93 VSWGEYSEELVLEAHSAGVKVVPQVGSFDEARKAVNAGVDAIIVQGREAGGH-------- 144
+G E++ AG + + +EAR AG DA+I QG EAGGH
Sbjct: 128 FHFGVPDREVIARLRRAGTLTLVTATTPEEARAVEAAGADAVIAQGVEAGGHQGTHRDSS 187
Query: 145 --VIGQDGLISLLPMVVDLIGDRDIPIIAAGGIVDARGYVAALSLGAQGICLGTRFVASE 202
GL+SLL V + + DIP++AAGGI+ A L+ GA LGT F+A++
Sbjct: 188 EDDGAGIGLLSLLAQVREAV---DIPVVAAGGIMRGGQIAAVLAAGADAAQLGTAFLATD 244
Query: 203 ESYAHPEYKRKLVEM--DKTEYTDVFGRARWPGAPHRVLQTPFFSNWKNIPAHENEVNQP 260
ES A +KR L + +T T F G P R L F
Sbjct: 245 ESGAPGPHKRALTDPLFARTRLTRAFT-----GRPARSLVNRFLREHGPYAPAAYPD--- 296
Query: 261 IIGRSTIHGIEKKIHRLAGTVPNVTTTGDIDSMVMFAGEGVGLIREILPAGEVVKQLVEG 320
+H + + + A GD M ++AG+G + RE+ PAG +V+ L
Sbjct: 297 ------VHHLTSPLRKAA------AKAGDAQGMALWAGQGHRMAREL-PAGRLVEVLAAE 343
Query: 321 AQ 322
Sbjct: 344 LA 345
|
| >3igs_A N-acetylmannosamine-6-phosphate 2-epimerase 2; energy metabolism, sugars, csgid, carbohydrate metabolism, isomerase; HET: MSE 16G; 1.50A {Salmonella enterica subsp} Length = 232 | Back alignment and structure |
|---|
Score = 70.9 bits (173), Expect = 1e-14
Identities = 37/192 (19%), Positives = 62/192 (32%), Gaps = 13/192 (6%)
Query: 14 VQAPLGPDISGPELVAAVANAGGLGLLRAPDWEAPDYLRDLIRKTR----SLTERPFGVG 69
Q G + PE+VAA+A A A E D LR + +R
Sbjct: 24 CQPVPGSPLDKPEIVAAMALAAEQAGAVAVRIEGIDNLRMTRSLVSVPIIGIIKRDLDES 83
Query: 70 VVLAFPHNENIKAILSEKVAVLQVSWGEYS-----EELVLEAHSAGVKVVPQVGSFDEAR 124
V P +++ A+ A++ V E L+ H + + S D+
Sbjct: 84 PVRITPFLDDVDALAQAGAAIIAVDGTARQRPVAVEALLARIHHHHLLTMADCSSVDDGL 143
Query: 125 KAVNAGVDAIIVQGREAGGHVIGQDGLISLLPMVVDLIGDRDIPIIAAGGIVDARGYVAA 184
G D I ++ + L+ + D +IA G A
Sbjct: 144 ACQRLGADIIGTTMSGYTTPDTPEEPDLPLVKALHDA----GCRVIAEGRYNSPALAAEA 199
Query: 185 LSLGAQGICLGT 196
+ GA + +G+
Sbjct: 200 IRYGAWAVTVGS 211
|
| >3q58_A N-acetylmannosamine-6-phosphate 2-epimerase; TIM beta/alpha barrel, ribulose-phosphate binding barrel, carbohydrate metabolic process; HET: BTB; 1.80A {Salmonella enterica subsp} Length = 229 | Back alignment and structure |
|---|
Score = 64.3 bits (156), Expect = 3e-12
Identities = 30/192 (15%), Positives = 64/192 (33%), Gaps = 13/192 (6%)
Query: 14 VQAPLGPDISGPELVAAVANAGGLGLLRAPDWEAPDYLRDLIRKTR----SLTERPFGVG 69
Q G + PE+VAA+A A A E + LR + + +R
Sbjct: 24 CQPVPGSPMDKPEIVAAMAQAAASAGAVAVRIEGIENLRTVRPHLSVPIIGIIKRDLTGS 83
Query: 70 VVLAFPHNENIKAILSEKVAVLQVSW-----GEYSEELVLEAHSAGVKVVPQVGSFDEAR 124
V P+ +++ A+ ++ + L+ G+ + + +E
Sbjct: 84 PVRITPYLQDVDALAQAGADIIAFDASFRSRPVDIDSLLTRIRLHGLLAMADCSTVNEGI 143
Query: 125 KAVNAGVDAIIVQGREAGGHVIGQDGLISLLPMVVDLIGDRDIPIIAAGGIVDARGYVAA 184
G++ I G + + ++++ + +IA G A
Sbjct: 144 SCHQKGIEFIGTTLSGYTGPITPVEPDLAMVTQLSHA----GCRVIAEGRYNTPALAANA 199
Query: 185 LSLGAQGICLGT 196
+ GA + +G+
Sbjct: 200 IEHGAWAVTVGS 211
|
| >1y0e_A Putative N-acetylmannosamine-6-phosphate 2-epimer; mannac-6-P epimerase, NANE, structural genomics, protein STR initiative, PSI; 1.95A {Staphylococcus aureus subsp} SCOP: c.1.2.5 Length = 223 | Back alignment and structure |
|---|
Score = 57.3 bits (138), Expect = 7e-10
Identities = 34/198 (17%), Positives = 74/198 (37%), Gaps = 18/198 (9%)
Query: 14 VQAPLGPDISGPELVAAVANA---GGLGLLRAPDWEAPDYLRDLIRKTR----SLTERPF 66
QA + +++ +A A GG +RA + + + + +R +
Sbjct: 11 CQALPDEPLHSSFIMSKMALAAYEGGAVGIRA---NTKEDILAIKETVDLPVIGIVKRDY 67
Query: 67 GVGVVLAFPHNENIKAILSEKVAVLQVSW------GEYSEELV--LEAHSAGVKVVPQVG 118
V ++ + ++ + V+ + E +ELV + H+ V+++ +
Sbjct: 68 DHSDVFITATSKEVDELIESQCEVIALDATLQQRPKETLDELVSYIRTHAPNVEIMADIA 127
Query: 119 SFDEARKAVNAGVDAIIVQGREAGGHVIGQDGLISLLPMVVDLIGDRDIPIIAAGGIVDA 178
+ +EA+ A G D I + GQ + + D++ D +IA G ++
Sbjct: 128 TVEEAKNAARLGFDYIGTTLHGYTSYTQGQLLYQNDFQFLKDVLQSVDAKVIAEGNVITP 187
Query: 179 RGYVAALSLGAQGICLGT 196
Y + LG +G
Sbjct: 188 DMYKRVMDLGVHCSVVGG 205
|
| >2nzl_A Hydroxyacid oxidase 1; HAOX1, glycolate oxidase, GOX, GOX1, structural genomics, structural genom consortium, SGC, oxidoreductase; HET: FMN; 1.35A {Homo sapiens} PDB: 2rdu_A* 2rdt_A* 2rdw_A* 2w0u_A* Length = 392 | Back alignment and structure |
|---|
Score = 49.1 bits (118), Expect = 8e-07
Identities = 25/84 (29%), Positives = 45/84 (53%), Gaps = 20/84 (23%)
Query: 121 DEARKAVNAGVDAIIVQ---GREAGGHVIGQ-DGL---ISLLPMVVDLIGDRDIPIIAAG 173
D+AR+AV G++ I+V R Q DG+ I +LP +V+ + + + + G
Sbjct: 264 DDAREAVKHGLNGILVSNHGAR--------QLDGVPATIDVLPEIVEAVEGK-VEVFLDG 314
Query: 174 GIVDARGY--VAALSLGAQGICLG 195
G+ +G + AL+LGA+ + +G
Sbjct: 315 GV--RKGTDVLKALALGAKAVFVG 336
|
| >1gox_A (S)-2-hydroxy-acid oxidase, peroxisomal; oxidoreductase (oxygen(A)); HET: FMN; 2.00A {Spinacia oleracea} SCOP: c.1.4.1 PDB: 1gyl_A* 1al8_A* 1al7_A* 2cdh_0 Length = 370 | Back alignment and structure |
|---|
Score = 49.1 bits (118), Expect = 9e-07
Identities = 29/84 (34%), Positives = 37/84 (44%), Gaps = 20/84 (23%)
Query: 121 DEARKAVNAGVDAIIVQ---GREAGGHVIGQ-DGL---ISLLPMVVDLIGDRDIPIIAAG 173
++AR AV G IIV R Q D + I L VV R IP+ G
Sbjct: 237 EDARLAVQHGAAGIIVSNHGAR--------QLDYVPATIMALEEVVKAAQGR-IPVFLDG 287
Query: 174 GIVDARGY--VAALSLGAQGICLG 195
G+ RG AL+LGA G+ +G
Sbjct: 288 GV--RRGTDVFKALALGAAGVFIG 309
|
| >2nli_A Lactate oxidase; flavoenzyme, FMN, D-lactate, oxidoreducta; HET: FMN; 1.59A {Aerococcus viridans} PDB: 2zfa_A* 2du2_A* 2e77_A* 2j6x_A* Length = 368 | Back alignment and structure |
|---|
Score = 48.3 bits (116), Expect = 1e-06
Identities = 20/83 (24%), Positives = 32/83 (38%), Gaps = 18/83 (21%)
Query: 121 DEARKAVNAGVDAIIVQ---GREAGGHVIGQDGL---ISLLPMVVDLIGDRDIPIIAAGG 174
++A A+ G I V R+ LP + + + R +PI+ G
Sbjct: 241 EDADMAIKRGASGIWVSNHGARQL-------YEAPGSFDTLPAIAERVNKR-VPIVFDSG 292
Query: 175 IVDARGY--VAALSLGAQGICLG 195
+ RG AL+ GA + LG
Sbjct: 293 V--RRGEHVAKALASGADVVALG 313
|
| >3sgz_A Hydroxyacid oxidase 2; flavoprotein, homology, INH oxidoreductase-oxidoreductase inhibitor complex; HET: FMN HO6; 1.35A {Rattus norvegicus} PDB: 1tb3_A* Length = 352 | Back alignment and structure |
|---|
Score = 46.7 bits (112), Expect = 5e-06
Identities = 24/83 (28%), Positives = 37/83 (44%), Gaps = 18/83 (21%)
Query: 121 DEARKAVNAGVDAIIVQ---GREAGGHVIGQDGL---ISLLPMVVDLIGDRDIPIIAAGG 174
++A A+ V I+V GR+ D + I L VV + + I + GG
Sbjct: 229 EDAELAMKHNVQGIVVSNHGGRQL-------DEVSASIDALREVVAAVKGK-IEVYMDGG 280
Query: 175 IVDARGY--VAALSLGAQGICLG 195
+ G + AL+LGA+ I LG
Sbjct: 281 V--RTGTDVLKALALGARCIFLG 301
|
| >1p4c_A L(+)-mandelate dehydrogenase; TIM barrel, hydroxy acid oxidizing enzyme, oxidoreductase; HET: FMN MES; 1.35A {Pseudomonas putida} SCOP: c.1.4.1 PDB: 1huv_A* 1p5b_A* 3giy_A* 2a7p_A* 2a85_A* 2a7n_A* Length = 380 | Back alignment and structure |
|---|
Score = 45.3 bits (108), Expect = 1e-05
Identities = 23/84 (27%), Positives = 36/84 (42%), Gaps = 22/84 (26%)
Query: 121 DEARKAVNAGVDAIIVQ---GREAGGHVIGQ-DGL---ISLLPMVVDLIGDRDIPIIAAG 173
++A + + G D +I+ GR Q D + +L V G P++
Sbjct: 237 EDADRCIAEGADGVILSNHGGR--------QLDCAISPMEVLAQSVAKTGK---PVLIDS 285
Query: 174 GIVDARGY--VAALSLGAQGICLG 195
G RG V AL+LGA+ + LG
Sbjct: 286 GF--RRGSDIVKALALGAEAVLLG 307
|
| >1kbi_A Cytochrome B2, L-LCR; flavocytochrome B2, electron transfer, oxidoreductase; HET: HEM FMN; 2.30A {Saccharomyces cerevisiae} SCOP: c.1.4.1 d.120.1.1 PDB: 1fcb_A* 1lco_A* 1ldc_A* 1sze_A* 2oz0_A* 1szf_A* 1szg_A* 1ltd_A* 1kbj_A* 1qcw_A* 3ks0_A* Length = 511 | Back alignment and structure |
|---|
Score = 43.1 bits (102), Expect = 9e-05
Identities = 22/87 (25%), Positives = 38/87 (43%), Gaps = 21/87 (24%)
Query: 121 DEARKAVNAGVDAIIVQ---GREAGGHVIGQDGL---ISLLPMVVDLIGDR----DIPII 170
++ KA GV +++ GR+ D I +L + ++ R + +
Sbjct: 355 EDVIKAAEIGVSGVVLSNHGGRQL-------DFSRAPIEVLAETMPILEQRNLKDKLEVF 407
Query: 171 AAGGIVDARGY--VAALSLGAQGICLG 195
GG+ RG + AL LGA+G+ LG
Sbjct: 408 VDGGV--RRGTDVLKALCLGAKGVGLG 432
|
| >1yxy_A Putative N-acetylmannosamine-6-phosphate 2-epimer; structural genomics, epimerase, PSI, structure initiative; 1.60A {Streptococcus pyogenes} SCOP: c.1.2.5 Length = 234 | Back alignment and structure |
|---|
Score = 41.8 bits (98), Expect = 1e-04
Identities = 28/198 (14%), Positives = 61/198 (30%), Gaps = 18/198 (9%)
Query: 14 VQAPLG--PDISGPELVAAVANAGGLGLLRAPDWEAPDYLRDLIRKTRS----LTERPFG 67
QA G ++ +A A + ++++ T + ++ +
Sbjct: 22 CQALPGEPLYSETGGIMPLMAKAAQEAGAVGIRANSVRDIKEIQAITDLPIIGIIKKDYP 81
Query: 68 VGVVLAFPHNENIKAILSEKVAVLQV-------SWGEYSEELVLEAHSA--GVKVVPQVG 118
+ + + +AV+ + G + + ++ +
Sbjct: 82 PQEPFITATMTEVDQLAALNIAVIAMDCTKRDRHDGLDIASFIRQVKEKYPNQLLMADIS 141
Query: 119 SFDEARKAVNAGVDAIIVQGREAGGHVIGQDGLISLLPMVVDLIGDRDIPIIAAGGIVDA 178
+FDE A AG+D + G G+ +++ + I +IA G I
Sbjct: 142 TFDEGLVAHQAGIDFV---GTTLSGYTPYSRQEAGPDVALIEALCKAGIAVIAEGKIHSP 198
Query: 179 RGYVAALSLGAQGICLGT 196
LG GI +G
Sbjct: 199 EEAKKINDLGVAGIVVGG 216
|
| >1vcf_A Isopentenyl-diphosphate delta-isomerase; TIM barrel, structural genomics, riken structural genomics/P initiative, RSGI; HET: FMN; 2.60A {Thermus thermophilus} SCOP: c.1.4.1 PDB: 1vcg_A* 3dh7_A* Length = 332 | Back alignment and structure |
|---|
Score = 41.9 bits (98), Expect = 2e-04
Identities = 27/126 (21%), Positives = 46/126 (36%), Gaps = 25/126 (19%)
Query: 94 SWGEYSEELVLEAHSAGVKVVPQVGSFDEARKAVNAGVDAIIVQGREAGG---------- 143
E EL+ VK V S + A + + A+ V G AGG
Sbjct: 169 GLVERLAELLPLPFPVMVKEVGHGLSREAALALRDLPLAAVDVAG--AGGTSWARVEEWV 226
Query: 144 ----------HVIGQDGLISLLPMVVDLIGDRDIPIIAAGGIVDARGYVAALSLGAQGIC 193
IG ++L V +++ +P++A+GG+ AL+LGA +
Sbjct: 227 RFGEVRHPELCEIGIPTARAIL-EVREVLP--HLPLVASGGVYTGTDGAKALALGADLLA 283
Query: 194 LGTRFV 199
+ +
Sbjct: 284 VARPLL 289
|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 332 | |||
| 3bo9_A | 326 | Putative nitroalkan dioxygenase; TM0800, structura | 100.0 | |
| 2gjl_A | 328 | Hypothetical protein PA1024; 2-nitropropane dioxyg | 100.0 | |
| 2z6i_A | 332 | Trans-2-enoyl-ACP reductase II; fatty acid synthes | 100.0 | |
| 3bw2_A | 369 | 2-nitropropane dioxygenase; TIM barrel, oxidoreduc | 100.0 | |
| 2uva_G | 2060 | Fatty acid synthase beta subunits; fungal, dehydra | 100.0 | |
| 2uv8_G | 2051 | Fatty acid synthase subunit beta (FAS1); fatty aci | 100.0 | |
| 3zen_D | 3089 | Fatty acid synthase; transferase, mycolic acid bio | 100.0 | |
| 3ffs_A | 400 | Inosine-5-monophosphate dehydrogenase; beta-alpha | 99.98 | |
| 4fo4_A | 366 | Inosine 5'-monophosphate dehydrogenase; structural | 99.96 | |
| 3khj_A | 361 | Inosine-5-monophosphate dehydrogenase; enzyme-inhi | 99.95 | |
| 1eep_A | 404 | Inosine 5'-monophosphate dehydrogenase; alpha-beta | 99.94 | |
| 2c6q_A | 351 | GMP reductase 2; TIM barrel, metal-binding, NADP, | 99.92 | |
| 3r2g_A | 361 | Inosine 5'-monophosphate dehydrogenase; structural | 99.92 | |
| 1ypf_A | 336 | GMP reductase; GUAC, purines, pyrimidines, nucleos | 99.9 | |
| 4fxs_A | 496 | Inosine-5'-monophosphate dehydrogenase; structural | 99.84 | |
| 3usb_A | 511 | Inosine-5'-monophosphate dehydrogenase; structural | 99.84 | |
| 4avf_A | 490 | Inosine-5'-monophosphate dehydrogenase; oxidoreduc | 99.83 | |
| 2qr6_A | 393 | IMP dehydrogenase/GMP reductase; NP_599840.1, G re | 99.83 | |
| 1jcn_A | 514 | Inosine monophosphate dehydrogenase I; IMPD, IMPDH | 99.8 | |
| 1vrd_A | 494 | Inosine-5'-monophosphate dehydrogenase; TM1347, st | 99.78 | |
| 4af0_A | 556 | Inosine-5'-monophosphate dehydrogenase; oxidoreduc | 99.76 | |
| 3q58_A | 229 | N-acetylmannosamine-6-phosphate 2-epimerase; TIM b | 99.75 | |
| 3igs_A | 232 | N-acetylmannosamine-6-phosphate 2-epimerase 2; ene | 99.75 | |
| 2cu0_A | 486 | Inosine-5'-monophosphate dehydrogenase; structural | 99.73 | |
| 1zfj_A | 491 | Inosine monophosphate dehydrogenase; IMPDH, CBS do | 99.73 | |
| 3b0p_A | 350 | TRNA-dihydrouridine synthase; TIM barrel, oxidored | 99.72 | |
| 1ofd_A | 1520 | Ferredoxin-dependent glutamate synthase 2; oxidore | 99.7 | |
| 1ep3_A | 311 | Dihydroorotate dehydrogenase B (PYRD subunit); het | 99.69 | |
| 1me8_A | 503 | Inosine-5'-monophosphate dehydrogenase; alpha beta | 99.68 | |
| 2nli_A | 368 | Lactate oxidase; flavoenzyme, FMN, D-lactate, oxid | 99.68 | |
| 1p0k_A | 349 | Isopentenyl-diphosphate delta-isomerase; terpene b | 99.67 | |
| 1ea0_A | 1479 | Glutamate synthase [NADPH] large chain; oxidoreduc | 99.67 | |
| 3sr7_A | 365 | Isopentenyl-diphosphate delta-isomerase; isopenten | 99.66 | |
| 1y0e_A | 223 | Putative N-acetylmannosamine-6-phosphate 2-epimer; | 99.65 | |
| 2yw3_A | 207 | 4-hydroxy-2-oxoglutarate aldolase/2-deydro-3- deox | 99.63 | |
| 1yxy_A | 234 | Putative N-acetylmannosamine-6-phosphate 2-epimer; | 99.61 | |
| 1vhn_A | 318 | Putative flavin oxidoreducatase; structural genomi | 99.61 | |
| 3sgz_A | 352 | Hydroxyacid oxidase 2; flavoprotein, homology, INH | 99.6 | |
| 2nzl_A | 392 | Hydroxyacid oxidase 1; HAOX1, glycolate oxidase, G | 99.6 | |
| 3vkj_A | 368 | Isopentenyl-diphosphate delta-isomerase; type 2 is | 99.59 | |
| 1kbi_A | 511 | Cytochrome B2, L-LCR; flavocytochrome B2, electron | 99.58 | |
| 1xi3_A | 215 | Thiamine phosphate pyrophosphorylase; structural g | 99.57 | |
| 1vcf_A | 332 | Isopentenyl-diphosphate delta-isomerase; TIM barre | 99.56 | |
| 1gox_A | 370 | (S)-2-hydroxy-acid oxidase, peroxisomal; oxidoredu | 99.56 | |
| 1yad_A | 221 | Regulatory protein TENI; TIM barrel, transcription | 99.55 | |
| 1nsj_A | 205 | PRAI, phosphoribosyl anthranilate isomerase; therm | 99.53 | |
| 4e38_A | 232 | Keto-hydroxyglutarate-aldolase/keto-deoxy-phospho | 99.52 | |
| 1jub_A | 311 | Dihydroorotate dehydrogenase A; homodimer, alpha-b | 99.51 | |
| 1wa3_A | 205 | 2-keto-3-deoxy-6-phosphogluconate aldolase; KDPG, | 99.51 | |
| 3o63_A | 243 | Probable thiamine-phosphate pyrophosphorylase; thi | 99.5 | |
| 1v5x_A | 203 | PRA isomerase, phosphoribosylanthranilate isomeras | 99.5 | |
| 1f76_A | 336 | Dihydroorotate dehydrogenase; monomer, alpha-beta- | 99.5 | |
| 3lab_A | 217 | Putative KDPG (2-keto-3-deoxy-6-phosphogluconate) | 99.49 | |
| 1p4c_A | 380 | L(+)-mandelate dehydrogenase; TIM barrel, hydroxy | 99.48 | |
| 2e6f_A | 314 | Dihydroorotate dehydrogenase; chagas disease, pyri | 99.48 | |
| 4adt_A | 297 | Pyridoxine biosynthetic enzyme PDX1 homologue, PU; | 99.47 | |
| 3qja_A | 272 | IGPS, indole-3-glycerol phosphate synthase; struct | 99.47 | |
| 1vhc_A | 224 | Putative KHG/KDPG aldolase; structural genomics, u | 99.42 | |
| 1h1y_A | 228 | D-ribulose-5-phosphate 3-epimerase; oxidative pent | 99.42 | |
| 1wbh_A | 214 | KHG/KDPG aldolase; lyase; 1.55A {Escherichia coli} | 99.42 | |
| 1tqj_A | 230 | Ribulose-phosphate 3-epimerase; beta-alpha barrel | 99.42 | |
| 2nv1_A | 305 | Pyridoxal biosynthesis lyase PDXS; (beta/alpha)8-b | 99.42 | |
| 1gte_A | 1025 | Dihydropyrimidine dehydrogenase; electron transfer | 99.42 | |
| 3tsm_A | 272 | IGPS, indole-3-glycerol phosphate synthase; struct | 99.41 | |
| 2zbt_A | 297 | Pyridoxal biosynthesis lyase PDXS; pyridoxine bios | 99.41 | |
| 3f4w_A | 211 | Putative hexulose 6 phosphate synthase; humps, mal | 99.39 | |
| 2v82_A | 212 | 2-dehydro-3-deoxy-6-phosphogalactonate aldolase; l | 99.39 | |
| 1mxs_A | 225 | KDPG aldolase; 2-keto-3-deoxy-6-phosphogluconate a | 99.37 | |
| 3ceu_A | 210 | Thiamine phosphate pyrophosphorylase; TIM barrel-l | 99.35 | |
| 1rpx_A | 230 | Protein (ribulose-phosphate 3-epimerase); chloropl | 99.34 | |
| 2tps_A | 227 | Protein (thiamin phosphate synthase); thiamin bios | 99.34 | |
| 1wv2_A | 265 | Thiazole moeity, thiazole biosynthesis protein THI | 99.32 | |
| 1vzw_A | 244 | Phosphoribosyl isomerase A; histidine biosynthesis | 99.31 | |
| 4aaj_A | 228 | N-(5'-phosphoribosyl)anthranilate isomerase; alpha | 99.31 | |
| 2fli_A | 220 | Ribulose-phosphate 3-epimerase; (beta/alpha)8-barr | 99.27 | |
| 3o07_A | 291 | Pyridoxine biosynthesis protein SNZ1; (beta/alpha) | 99.27 | |
| 2y88_A | 244 | Phosphoribosyl isomerase A; aromatic amino acid bi | 99.26 | |
| 1rd5_A | 262 | Tryptophan synthase alpha chain, chloroplast; hydr | 99.26 | |
| 1tv5_A | 443 | Dhodehase, dihydroorotate dehydrogenase homolog, m | 99.25 | |
| 3vnd_A | 267 | TSA, tryptophan synthase alpha chain; psychrophili | 99.24 | |
| 3nav_A | 271 | Tryptophan synthase alpha chain; alpha subunit, st | 99.24 | |
| 3ctl_A | 231 | D-allulose-6-phosphate 3-epimerase; D-glucitol 6-p | 99.24 | |
| 3i65_A | 415 | Dihydroorotate dehydrogenase homolog, mitochondria | 99.23 | |
| 1xm3_A | 264 | Thiazole biosynthesis protein THIG; structural gen | 99.22 | |
| 1thf_D | 253 | HISF protein; thermophIle, TIM-barrel, histidine b | 99.22 | |
| 4ef8_A | 354 | Dihydroorotate dehydrogenase; phenyl isothiocyanat | 99.22 | |
| 3zwt_A | 367 | Dihydroorotate dehydrogenase (quinone), mitochond; | 99.22 | |
| 3ovp_A | 228 | Ribulose-phosphate 3-epimerase; iron binding, isom | 99.22 | |
| 1h5y_A | 253 | HISF; histidine biosynthesis, TIM-barrel; 2.0A {Py | 99.21 | |
| 1ka9_F | 252 | Imidazole glycerol phosphtate synthase; riken stru | 99.19 | |
| 1pii_A | 452 | N-(5'phosphoribosyl)anthranilate isomerase; bifunc | 99.19 | |
| 3oix_A | 345 | Putative dihydroorotate dehydrogenase; dihydrooro | 99.18 | |
| 3inp_A | 246 | D-ribulose-phosphate 3-epimerase; IDP02542, isomer | 99.18 | |
| 1i4n_A | 251 | Indole-3-glycerol phosphate synthase; thermostable | 99.17 | |
| 1vc4_A | 254 | Indole-3-glycerol phosphate synthase; lyase, trypt | 99.17 | |
| 1geq_A | 248 | Tryptophan synthase alpha-subunit; hyperthermophIl | 99.16 | |
| 1tqx_A | 227 | D-ribulose-5-phosphate 3-epimerase, putative; stru | 99.14 | |
| 2w6r_A | 266 | Imidazole glycerol phosphate synthase subunit HISF | 99.13 | |
| 3nl6_A | 540 | Thiamine biosynthetic bifunctional enzyme; thiamin | 99.12 | |
| 2htm_A | 268 | Thiazole biosynthesis protein THIG; thiamin biosyn | 99.12 | |
| 1qop_A | 268 | Tryptophan synthase alpha chain; lyase, carbon-oxy | 99.1 | |
| 4a29_A | 258 | Engineered retro-aldol enzyme RA95.0; de novo prot | 99.1 | |
| 1ujp_A | 271 | Tryptophan synthase alpha chain; riken structural | 99.1 | |
| 2qjg_A | 273 | Putative aldolase MJ0400; beta-alpha barrel, lyase | 99.09 | |
| 3cu2_A | 237 | Ribulose-5-phosphate 3-epimerase; YP_718263.1, rib | 99.05 | |
| 1qo2_A | 241 | Molecule: N-((5-phosphoribosyl)-formimino)-5-amino | 99.05 | |
| 3jr2_A | 218 | Hexulose-6-phosphate synthase SGBH; 3-keto-L-gulon | 99.04 | |
| 3ajx_A | 207 | 3-hexulose-6-phosphate synthase; HPS, OMPDC supraf | 99.03 | |
| 2ekc_A | 262 | AQ_1548, tryptophan synthase alpha chain; structur | 99.03 | |
| 1pii_A | 452 | N-(5'phosphoribosyl)anthranilate isomerase; bifunc | 99.02 | |
| 3tha_A | 252 | Tryptophan synthase alpha chain; structural genomi | 98.99 | |
| 1z41_A | 338 | YQJM, probable NADH-dependent flavin oxidoreductas | 98.92 | |
| 2yzr_A | 330 | Pyridoxal biosynthesis lyase PDXS; redox protein, | 98.9 | |
| 1jvn_A | 555 | Glutamine, bifunctional histidine biosynthesis pro | 98.89 | |
| 3tjx_A | 354 | Dihydroorotate dehydrogenase; PYRD, dhodh, lmdhodh | 98.88 | |
| 3tdn_A | 247 | FLR symmetric alpha-beta TIM barrel; symmetric sup | 98.86 | |
| 2h6r_A | 219 | Triosephosphate isomerase; beta-alpha barrel; 2.30 | 98.78 | |
| 2gou_A | 365 | Oxidoreductase, FMN-binding; OLD yeallow enzyme, f | 98.7 | |
| 1viz_A | 240 | PCRB protein homolog; structural genomics, unknown | 98.68 | |
| 2r14_A | 377 | Morphinone reductase; H-tunnelling, flavoprotein, | 98.67 | |
| 1vyr_A | 364 | Pentaerythritol tetranitrate reductase; oxidoreduc | 98.63 | |
| 2p10_A | 286 | MLL9387 protein; putative phosphonopyruvate hydrol | 98.59 | |
| 2f6u_A | 234 | GGGPS, (S)-3-O-geranylgeranylglyceryl phosphate sy | 98.54 | |
| 1icp_A | 376 | OPR1, 12-oxophytodienoate reductase 1; beta-alpha- | 98.51 | |
| 1mzh_A | 225 | Deoxyribose-phosphate aldolase; alpha-beta barrel, | 98.48 | |
| 3hgj_A | 349 | Chromate reductase; TIM barrel, oxidoreductase; HE | 98.48 | |
| 3gr7_A | 340 | NADPH dehydrogenase; flavin, FMN, beta-alpha-barre | 98.47 | |
| 3kts_A | 192 | Glycerol uptake operon antiterminator regulatory; | 98.44 | |
| 1q6o_A | 216 | Humps, 3-keto-L-gulonate 6-phosphate decarboxylase | 98.44 | |
| 1ps9_A | 671 | 2,4-dienoyl-COA reductase; iron-sulfur, TIM barrel | 98.4 | |
| 3tdn_A | 247 | FLR symmetric alpha-beta TIM barrel; symmetric sup | 98.37 | |
| 3vzx_A | 228 | Heptaprenylglyceryl phosphate synthase; biosynthes | 98.34 | |
| 3l5l_A | 363 | Xenobiotic reductase A; TIM barrel, oxidoreductase | 98.33 | |
| 2czd_A | 208 | Orotidine 5'-phosphate decarboxylase; pyrimidine b | 98.31 | |
| 2agk_A | 260 | 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino) me | 98.31 | |
| 1hg3_A | 225 | Triosephosphate isomerase; thermostability, tetram | 98.28 | |
| 1w8s_A | 263 | FBP aldolase, fructose-bisphosphate aldolase class | 98.27 | |
| 3w01_A | 235 | Heptaprenylglyceryl phosphate synthase; biosynthes | 98.25 | |
| 1w0m_A | 226 | TIM, triosephosphate isomerase; glycolysis, glucon | 98.23 | |
| 1o94_A | 729 | Tmadh, trimethylamine dehydrogenase; electron tran | 98.21 | |
| 3l5a_A | 419 | NADH/flavin oxidoreductase/NADH oxidase; OLD yello | 98.2 | |
| 3gka_A | 361 | N-ethylmaleimide reductase; decode biostructures, | 98.19 | |
| 3exr_A | 221 | RMPD (hexulose-6-phosphate synthase); beta barrel, | 98.16 | |
| 4ab4_A | 362 | Xenobiotic reductase B; oxidoreductase, OLD yellow | 98.15 | |
| 3kru_A | 343 | NADH:flavin oxidoreductase/NADH oxidase; homotetra | 98.12 | |
| 1ka9_F | 252 | Imidazole glycerol phosphtate synthase; riken stru | 98.1 | |
| 1x1o_A | 286 | Nicotinate-nucleotide pyrophosphorylase; transfera | 98.08 | |
| 3glc_A | 295 | Aldolase LSRF; TIM barrel, lyase, schiff base; HET | 98.07 | |
| 3ngj_A | 239 | Deoxyribose-phosphate aldolase; lyase, structural | 97.98 | |
| 2hsa_B | 402 | 12-oxophytodienoate reductase 3; alpha beta 8 barr | 97.97 | |
| 2w6r_A | 266 | Imidazole glycerol phosphate synthase subunit HISF | 97.95 | |
| 3oa3_A | 288 | Aldolase; structural genomics, seattle structural | 97.94 | |
| 1o4u_A | 285 | Type II quinolic acid phosphoribosyltransferase; s | 97.93 | |
| 1to3_A | 304 | Putative aldolase YIHT; beta-alpha barrel, structu | 97.93 | |
| 1qo2_A | 241 | Molecule: N-((5-phosphoribosyl)-formimino)-5-amino | 97.92 | |
| 4gj1_A | 243 | 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino) me | 97.89 | |
| 2b7n_A | 273 | Probable nicotinate-nucleotide pyrophosphorylase; | 97.88 | |
| 3vk5_A | 286 | MOEO5; TIM barrel, transferase; HET: FPQ; 1.39A {S | 97.88 | |
| 1ub3_A | 220 | Aldolase protein; schiff base, deoxyribose phospha | 97.87 | |
| 1thf_D | 253 | HISF protein; thermophIle, TIM-barrel, histidine b | 97.85 | |
| 1qpo_A | 284 | Quinolinate acid phosphoribosyl transferase; type | 97.85 | |
| 2qr6_A | 393 | IMP dehydrogenase/GMP reductase; NP_599840.1, G re | 97.84 | |
| 1vkf_A | 188 | Glycerol uptake operon antiterminator-related Pro; | 97.84 | |
| 3tqv_A | 287 | Nicotinate-nucleotide pyrophosphorylase; glycosylt | 97.79 | |
| 3paj_A | 320 | Nicotinate-nucleotide pyrophosphorylase, carboxyl; | 97.73 | |
| 1h5y_A | 253 | HISF; histidine biosynthesis, TIM-barrel; 2.0A {Py | 97.72 | |
| 3l0g_A | 300 | Nicotinate-nucleotide pyrophosphorylase; ssgcid, N | 97.67 | |
| 2jbm_A | 299 | Nicotinate-nucleotide pyrophosphorylase; NAD, enzy | 97.67 | |
| 1qap_A | 296 | Quinolinic acid phosphoribosyltransferase; glycosy | 97.66 | |
| 3cwo_X | 237 | Beta/alpha-barrel protein based on 1THF and 1TMY; | 97.66 | |
| 3aty_A | 379 | Tcoye, prostaglandin F2A synthase; alpha/beta barr | 97.63 | |
| 3gnn_A | 298 | Nicotinate-nucleotide pyrophosphorylase; decode bi | 97.6 | |
| 3r12_A | 260 | Deoxyribose-phosphate aldolase; TIM beta/alpha-bar | 97.59 | |
| 2y88_A | 244 | Phosphoribosyl isomerase A; aromatic amino acid bi | 97.58 | |
| 1wa3_A | 205 | 2-keto-3-deoxy-6-phosphogluconate aldolase; KDPG, | 97.55 | |
| 1vzw_A | 244 | Phosphoribosyl isomerase A; histidine biosynthesis | 97.53 | |
| 3c2e_A | 294 | Nicotinate-nucleotide pyrophosphorylase; qprtase, | 97.5 | |
| 1eix_A | 245 | Orotidine 5'-monophosphate decarboxylase; alpha-be | 97.41 | |
| 3ndo_A | 231 | Deoxyribose-phosphate aldolase; ssgcid, NIH, niaid | 97.4 | |
| 3k30_A | 690 | Histamine dehydrogenase; 6-S-cysteinyl-FMN, ADP bi | 97.4 | |
| 2yyu_A | 246 | Orotidine 5'-phosphate decarboxylase; TIM barrel, | 97.33 | |
| 4e38_A | 232 | Keto-hydroxyglutarate-aldolase/keto-deoxy-phospho | 97.25 | |
| 3iwp_A | 287 | Copper homeostasis protein CUTC homolog; conserved | 97.2 | |
| 4gj1_A | 243 | 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino) me | 97.13 | |
| 3r2g_A | 361 | Inosine 5'-monophosphate dehydrogenase; structural | 97.08 | |
| 3tjl_A | 407 | NADPH dehydrogenase; OLD yellow enzyme, flavin mon | 97.03 | |
| 3lab_A | 217 | Putative KDPG (2-keto-3-deoxy-6-phosphogluconate) | 97.02 | |
| 1gvf_A | 286 | Tagatose-bisphosphate aldolase AGAY; lyase, zinc.; | 96.93 | |
| 1vcv_A | 226 | Probable deoxyribose-phosphate aldolase; DERA, hyp | 96.89 | |
| 1dbt_A | 239 | Orotidine 5'-phosphate decarboxylase; UMP, TIM bar | 96.8 | |
| 3nvt_A | 385 | 3-deoxy-D-arabino-heptulosonate 7-phosphate synth; | 96.64 | |
| 1vc4_A | 254 | Indole-3-glycerol phosphate synthase; lyase, trypt | 96.61 | |
| 3m47_A | 228 | Orotidine 5'-phosphate decarboxylase; orotidine 5' | 96.5 | |
| 3vav_A | 275 | 3-methyl-2-oxobutanoate hydroxymethyltransferase; | 96.44 | |
| 1vhc_A | 224 | Putative KHG/KDPG aldolase; structural genomics, u | 96.42 | |
| 3q94_A | 288 | Fructose-bisphosphate aldolase, class II; structur | 96.4 | |
| 2isw_A | 323 | Putative fructose-1,6-bisphosphate aldolase; class | 96.36 | |
| 1ypf_A | 336 | GMP reductase; GUAC, purines, pyrimidines, nucleos | 96.33 | |
| 3qja_A | 272 | IGPS, indole-3-glycerol phosphate synthase; struct | 96.26 | |
| 4af0_A | 556 | Inosine-5'-monophosphate dehydrogenase; oxidoreduc | 96.23 | |
| 1o66_A | 275 | 3-methyl-2-oxobutanoate hydroxymethyltransferase; | 96.23 | |
| 1n7k_A | 234 | Deoxyribose-phosphate aldolase; A.pernix, tetramer | 96.21 | |
| 4fo4_A | 366 | Inosine 5'-monophosphate dehydrogenase; structural | 96.18 | |
| 1jvn_A | 555 | Glutamine, bifunctional histidine biosynthesis pro | 96.17 | |
| 1wbh_A | 214 | KHG/KDPG aldolase; lyase; 1.55A {Escherichia coli} | 96.14 | |
| 3ve9_A | 215 | Orotidine-5'-phosphate decarboxylase; TIM barrel f | 96.11 | |
| 3ih1_A | 305 | Methylisocitrate lyase; alpha-beta structure, TIM- | 96.07 | |
| 2yw3_A | 207 | 4-hydroxy-2-oxoglutarate aldolase/2-deydro-3- deox | 96.02 | |
| 1rvg_A | 305 | Fructose-1,6-bisphosphate aldolase; class II aldol | 95.98 | |
| 3fs2_A | 298 | 2-dehydro-3-deoxyphosphooctonate aldolase; ssgcid, | 95.97 | |
| 2agk_A | 260 | 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino) me | 95.95 | |
| 3iv3_A | 332 | Tagatose 1,6-diphosphate aldolase 2; TIM barrel, p | 95.93 | |
| 3n9r_A | 307 | Fructose-bisphosphate aldolase; FBP aldolase, clas | 95.86 | |
| 3ru6_A | 303 | Orotidine 5'-phosphate decarboxylase; structural g | 95.86 | |
| 3tsm_A | 272 | IGPS, indole-3-glycerol phosphate synthase; struct | 95.83 | |
| 4fxs_A | 496 | Inosine-5'-monophosphate dehydrogenase; structural | 95.8 | |
| 1twd_A | 256 | Copper homeostasis protein CUTC; TIM-like protein, | 95.76 | |
| 2ftp_A | 302 | Hydroxymethylglutaryl-COA lyase; structural genomi | 95.74 | |
| 1yya_A | 250 | Triosephosphate isomerase; riken structural genomi | 95.65 | |
| 3iwp_A | 287 | Copper homeostasis protein CUTC homolog; conserved | 95.65 | |
| 1aw2_A | 256 | Triosephosphate isomerase; psychrophilic, vibrio m | 95.64 | |
| 1xg4_A | 295 | Probable methylisocitrate lyase; 2-methylisocitrat | 95.63 | |
| 1mxs_A | 225 | KDPG aldolase; 2-keto-3-deoxy-6-phosphogluconate a | 95.63 | |
| 1m3u_A | 264 | 3-methyl-2-oxobutanoate hydroxymethyltransferase; | 95.59 | |
| 3usb_A | 511 | Inosine-5'-monophosphate dehydrogenase; structural | 95.59 | |
| 1vs1_A | 276 | 3-deoxy-7-phosphoheptulonate synthase; (beta/alpha | 95.57 | |
| 3ffs_A | 400 | Inosine-5-monophosphate dehydrogenase; beta-alpha | 95.56 | |
| 1eep_A | 404 | Inosine 5'-monophosphate dehydrogenase; alpha-beta | 95.54 | |
| 3khj_A | 361 | Inosine-5-monophosphate dehydrogenase; enzyme-inhi | 95.54 | |
| 2a4a_A | 281 | Deoxyribose-phosphate aldolase; lyase, TIM beta/al | 95.51 | |
| 1vr6_A | 350 | Phospho-2-dehydro-3-deoxyheptonate aldolase; TM034 | 95.46 | |
| 3b8i_A | 287 | PA4872 oxaloacetate decarboxylase; alpha/beta barr | 95.43 | |
| 4adt_A | 297 | Pyridoxine biosynthetic enzyme PDX1 homologue, PU; | 95.43 | |
| 1twd_A | 256 | Copper homeostasis protein CUTC; TIM-like protein, | 95.41 | |
| 4avf_A | 490 | Inosine-5'-monophosphate dehydrogenase; oxidoreduc | 95.41 | |
| 1oy0_A | 281 | Ketopantoate hydroxymethyltransferase; domain swap | 95.27 | |
| 1tre_A | 255 | Triosephosphate isomerase; intramolecular oxidored | 95.25 | |
| 4dbe_A | 222 | Orotidine 5'-phosphate decarboxylase; TIM barrel, | 95.2 | |
| 2yc6_A | 257 | Triosephosphate isomerase; glycolysis; HET: PGA; 1 | 95.19 | |
| 1p1x_A | 260 | Deoxyribose-phosphate aldolase; alpha-beta barrel, | 95.1 | |
| 3f4w_A | 211 | Putative hexulose 6 phosphate synthase; humps, mal | 94.88 | |
| 3q58_A | 229 | N-acetylmannosamine-6-phosphate 2-epimerase; TIM b | 94.88 | |
| 1yxy_A | 234 | Putative N-acetylmannosamine-6-phosphate 2-epimer; | 94.88 | |
| 2qiw_A | 255 | PEP phosphonomutase; structural genomics, joint ce | 94.88 | |
| 2i9e_A | 259 | Triosephosphate isomerase; 2.00A {Tenebrio molitor | 94.84 | |
| 3fok_A | 307 | Uncharacterized protein CGL0159; CGL0159 ,brevibac | 94.82 | |
| 2bdq_A | 224 | Copper homeostasis protein CUTC; alpha beta protei | 94.77 | |
| 1jub_A | 311 | Dihydroorotate dehydrogenase A; homodimer, alpha-b | 94.73 | |
| 2btm_A | 252 | TIM, protein (triosephosphate isomerase); thermoph | 94.73 | |
| 2wqp_A | 349 | Polysialic acid capsule biosynthesis protein SIAC; | 94.72 | |
| 2jgq_A | 233 | Triosephosphate isomerase; glycolysis, pentose shu | 94.7 | |
| 3to5_A | 134 | CHEY homolog; alpha(5)beta(5), chemotaxis, FLIM, p | 94.69 | |
| 3igs_A | 232 | N-acetylmannosamine-6-phosphate 2-epimerase 2; ene | 94.68 | |
| 3hzh_A | 157 | Chemotaxis response regulator (CHEY-3); phosphatas | 94.65 | |
| 2c6q_A | 351 | GMP reductase 2; TIM barrel, metal-binding, NADP, | 94.54 | |
| 1p0k_A | 349 | Isopentenyl-diphosphate delta-isomerase; terpene b | 94.46 | |
| 1vli_A | 385 | Spore coat polysaccharide biosynthesis protein SP; | 94.36 | |
| 3tfx_A | 259 | Orotidine 5'-phosphate decarboxylase; PSI-biology, | 94.33 | |
| 1o5x_A | 248 | TIM, triosephosphate isomerase; 2- phosphoglycerat | 94.32 | |
| 3l21_A | 304 | DHDPS, dihydrodipicolinate synthase; DAPA, dimer, | 94.3 | |
| 1vrd_A | 494 | Inosine-5'-monophosphate dehydrogenase; TM1347, st | 94.29 | |
| 2j27_A | 250 | Triosephosphate isomerase glycosomal; TIM, 2PG, LO | 94.28 | |
| 3eoo_A | 298 | Methylisocitrate lyase; seattle structural genomic | 94.27 | |
| 3sz8_A | 285 | 2-dehydro-3-deoxyphosphooctonate aldolase 2; ssgci | 94.25 | |
| 3sr7_A | 365 | Isopentenyl-diphosphate delta-isomerase; isopenten | 94.24 | |
| 1mo0_A | 275 | TIM, triosephosphate isomerase; structural genomic | 94.22 | |
| 1vqt_A | 213 | Orotidine 5'-phosphate decarboxylase; TM0332, stru | 94.15 | |
| 3flu_A | 297 | DHDPS, dihydrodipicolinate synthase; TIM barrel, b | 94.14 | |
| 1r2r_A | 248 | TIM, triosephosphate isomerase; closed loop confor | 94.14 | |
| 2e6f_A | 314 | Dihydroorotate dehydrogenase; chagas disease, pyri | 94.05 | |
| 3gl9_A | 122 | Response regulator; beta-sheet, surrounded by alph | 94.04 | |
| 1ydn_A | 295 | Hydroxymethylglutaryl-COA lyase; TIM-barrel protei | 94.04 | |
| 2ojp_A | 292 | DHDPS, dihydrodipicolinate synthase; dimer, lysine | 94.03 | |
| 3jte_A | 143 | Response regulator receiver protein; structural ge | 94.01 | |
| 1xky_A | 301 | Dihydrodipicolinate synthase; TIM barrel, , lysine | 93.98 | |
| 3s1x_A | 223 | Probable transaldolase; alpha-beta barrel, conform | 93.96 | |
| 4a3u_A | 358 | NCR, NADH\:flavin oxidoreductase/NADH oxidase; HET | 93.92 | |
| 1jcn_A | 514 | Inosine monophosphate dehydrogenase I; IMPD, IMPDH | 93.91 | |
| 1zlp_A | 318 | PSR132, petal death protein; TIM-barrel, helix swa | 93.85 | |
| 2ze3_A | 275 | DFA0005; organic waste LEFT-OVER decomposition, al | 93.75 | |
| 2v82_A | 212 | 2-dehydro-3-deoxy-6-phosphogalactonate aldolase; l | 93.72 | |
| 3g8r_A | 350 | Probable spore coat polysaccharide biosynthesis P; | 93.71 | |
| 2htm_A | 268 | Thiazole biosynthesis protein THIG; thiamin biosyn | 93.69 | |
| 3b0p_A | 350 | TRNA-dihydrouridine synthase; TIM barrel, oxidored | 93.69 | |
| 1f76_A | 336 | Dihydroorotate dehydrogenase; monomer, alpha-beta- | 93.68 | |
| 3m9y_A | 254 | Triosephosphate isomerase; TIM barrel, glycolysis, | 93.61 | |
| 1b9b_A | 255 | TIM, protein (triosephosphate isomerase); thermoph | 93.58 | |
| 1xm3_A | 264 | Thiazole biosynthesis protein THIG; structural gen | 93.56 | |
| 3qze_A | 314 | DHDPS, dihydrodipicolinate synthase; alpha beta ba | 93.56 | |
| 3pm6_A | 306 | Putative fructose-bisphosphate aldolase; structura | 93.54 | |
| 1qwg_A | 251 | PSL synthase;, (2R)-phospho-3-sulfolactate synthas | 93.47 | |
| 1ep3_A | 311 | Dihydroorotate dehydrogenase B (PYRD subunit); het | 93.4 | |
| 3eb2_A | 300 | Putative dihydrodipicolinate synthetase; lysine bi | 93.39 | |
| 1zco_A | 262 | 2-dehydro-3-deoxyphosphoheptonate aldolase; arabin | 93.34 | |
| 3na8_A | 315 | Putative dihydrodipicolinate synthetase; lyase; HE | 93.27 | |
| 1o5k_A | 306 | DHDPS, dihydrodipicolinate synthase; TM1521, struc | 93.27 | |
| 2vxn_A | 251 | Triosephosphate isomerase; fatty acid biosynthesis | 93.25 | |
| 3r8r_A | 212 | Transaldolase; pentose phosphate pathway, schiff b | 93.24 | |
| 2v5j_A | 287 | 2,4-dihydroxyhept-2-ENE-1,7-dioic acid aldolase; l | 93.23 | |
| 3eul_A | 152 | Possible nitrate/nitrite response transcriptional | 93.22 | |
| 2bdq_A | 224 | Copper homeostasis protein CUTC; alpha beta protei | 93.18 | |
| 1tmy_A | 120 | CHEY protein, TMY; chemotaxis, phosphoryl transfer | 93.16 | |
| 3cz5_A | 153 | Two-component response regulator, LUXR family; str | 93.14 | |
| 3zwt_A | 367 | Dihydroorotate dehydrogenase (quinone), mitochond; | 93.12 | |
| 3ble_A | 337 | Citramalate synthase from leptospira interrogans; | 93.1 | |
| 1m6j_A | 261 | TIM, TPI, triosephosphate isomerase; asymmetry, mo | 93.09 | |
| 3nav_A | 271 | Tryptophan synthase alpha chain; alpha subunit, st | 93.09 | |
| 3qvq_A | 252 | Phosphodiesterase OLEI02445; structural genomics, | 93.09 | |
| 1nvm_A | 345 | HOA, 4-hydroxy-2-oxovalerate aldolase; sequestered | 93.08 | |
| 3cnb_A | 143 | DNA-binding response regulator, MERR family; signa | 93.06 | |
| 3cpr_A | 304 | Dihydrodipicolinate synthetase; (beta/alpha)8-barr | 93.05 | |
| 3sgz_A | 352 | Hydroxyacid oxidase 2; flavoprotein, homology, INH | 93.02 | |
| 3daq_A | 292 | DHDPS, dihydrodipicolinate synthase; lysine biosyn | 92.99 | |
| 2nzl_A | 392 | Hydroxyacid oxidase 1; HAOX1, glycolate oxidase, G | 92.89 | |
| 3fkr_A | 309 | L-2-keto-3-deoxyarabonate dehydratase; DHDPS/NAL f | 92.85 | |
| 2ehh_A | 294 | DHDPS, dihydrodipicolinate synthase; structural ge | 92.85 | |
| 2rfg_A | 297 | Dihydrodipicolinate synthase; beta barrel, amino-a | 92.82 | |
| 1s2w_A | 295 | Phosphoenolpyruvate phosphomutase; phosphonopyruva | 92.8 | |
| 3b4u_A | 294 | Dihydrodipicolinate synthase; structural genomics, | 92.8 | |
| 3lua_A | 140 | Response regulator receiver protein; two-component | 92.76 | |
| 3tak_A | 291 | DHDPS, dihydrodipicolinate synthase; TIM barrel, l | 92.74 | |
| 3h1g_A | 129 | Chemotaxis protein CHEY homolog; sulfate-bound CHE | 92.72 | |
| 2yxg_A | 289 | DHDPS, dihydrodipicolinate synthase; MJ0244, TIM b | 92.7 | |
| 2nli_A | 368 | Lactate oxidase; flavoenzyme, FMN, D-lactate, oxid | 92.69 | |
| 3o07_A | 291 | Pyridoxine biosynthesis protein SNZ1; (beta/alpha) | 92.68 | |
| 3eod_A | 130 | Protein HNR; response regulator, phosphoprotein, t | 92.61 | |
| 2wkj_A | 303 | N-acetylneuraminate lyase; directed evolution, sia | 92.57 | |
| 2qkf_A | 280 | 3-deoxy-D-manno-octulosonic acid 8- phosphate SYN; | 92.54 | |
| 3tml_A | 288 | 2-dehydro-3-deoxyphosphooctonate aldolase; ssgcid, | 92.54 | |
| 3a5f_A | 291 | Dihydrodipicolinate synthase; TIM barrel, enzyme, | 92.53 | |
| 3vav_A | 275 | 3-methyl-2-oxobutanoate hydroxymethyltransferase; | 92.52 | |
| 3qst_A | 255 | Triosephosphate isomerase, putative; TIM barrel; 1 | 92.52 | |
| 2qxy_A | 142 | Response regulator; regulation of transcription, N | 92.49 | |
| 1f6k_A | 293 | N-acetylneuraminate lyase; beta barrel; 1.60A {Hae | 92.48 | |
| 3rqi_A | 184 | Response regulator protein; structural genomics, s | 92.47 | |
| 3h5d_A | 311 | DHDPS, dihydrodipicolinate synthase; lysine biosyn | 92.45 | |
| 2pgw_A | 384 | Muconate cycloisomerase; enolase superfamily, octa | 92.42 | |
| 2r8w_A | 332 | AGR_C_1641P; APC7498, dihydrodipicolinate synthase | 92.41 | |
| 3gr7_A | 340 | NADPH dehydrogenase; flavin, FMN, beta-alpha-barre | 92.39 | |
| 3cg0_A | 140 | Response regulator receiver modulated diguanylate | 92.37 | |
| 1m5w_A | 243 | Pyridoxal phosphate biosynthetic protein PDXJ; TIM | 92.35 | |
| 2zbt_A | 297 | Pyridoxal biosynthesis lyase PDXS; pyridoxine bios | 92.35 | |
| 3f6c_A | 134 | Positive transcription regulator EVGA; structural | 92.34 | |
| 1mzh_A | 225 | Deoxyribose-phosphate aldolase; alpha-beta barrel, | 92.32 | |
| 3oix_A | 345 | Putative dihydroorotate dehydrogenase; dihydrooro | 92.31 | |
| 1gox_A | 370 | (S)-2-hydroxy-acid oxidase, peroxisomal; oxidoredu | 92.31 | |
| 1dxe_A | 256 | 2-dehydro-3-deoxy-galactarate aldolase; class II a | 92.29 | |
| 2hjp_A | 290 | Phosphonopyruvate hydrolase; phosporus-Ca cleavage | 92.27 | |
| 3th6_A | 249 | Triosephosphate isomerase; alpha/beta barrel, embr | 92.26 | |
| 3si9_A | 315 | DHDPS, dihydrodipicolinate synthase; structural ge | 92.22 | |
| 1vhn_A | 318 | Putative flavin oxidoreducatase; structural genomi | 92.14 | |
| 1ney_A | 247 | TIM, triosephosphate isomerase; yeast, DHAP, dihyd | 92.14 | |
| 3krs_A | 271 | Triosephosphate isomerase; ssgcid, SBRI, emerald b | 92.08 | |
| 2nv1_A | 305 | Pyridoxal biosynthesis lyase PDXS; (beta/alpha)8-b | 92.03 | |
| 1o60_A | 292 | 2-dehydro-3-deoxyphosphooctonate aldolase; structu | 92.0 | |
| 3hdv_A | 136 | Response regulator; PSI-II, structural genomics, P | 91.99 | |
| 2v9d_A | 343 | YAGE; dihydrodipicolinic acid synthase, N-acetyl n | 91.93 | |
| 2p10_A | 286 | MLL9387 protein; putative phosphonopyruvate hydrol | 91.91 | |
| 3vnd_A | 267 | TSA, tryptophan synthase alpha chain; psychrophili | 91.89 | |
| 1xg4_A | 295 | Probable methylisocitrate lyase; 2-methylisocitrat | 91.87 | |
| 1qop_A | 268 | Tryptophan synthase alpha chain; lyase, carbon-oxy | 91.87 | |
| 3qfe_A | 318 | Putative dihydrodipicolinate synthase family PROT; | 91.79 | |
| 3f6p_A | 120 | Transcriptional regulatory protein YYCF; unphospho | 91.7 | |
| 3t6k_A | 136 | Response regulator receiver; flavodoxin-like, stru | 91.7 | |
| 2hjp_A | 290 | Phosphonopyruvate hydrolase; phosporus-Ca cleavage | 91.63 | |
| 3kht_A | 144 | Response regulator; PSI-II, 11023K, structural gen | 91.62 | |
| 1dbw_A | 126 | Transcriptional regulatory protein FIXJ; doubly wo | 91.62 | |
| 3crn_A | 132 | Response regulator receiver domain protein, CHEY-; | 91.62 | |
| 3m5v_A | 301 | DHDPS, dihydrodipicolinate synthase; TIM barrel, c | 91.61 | |
| 2r25_B | 133 | Osmosensing histidine protein kinase SLN1; alpha5- | 91.61 | |
| 1ydo_A | 307 | HMG-COA lyase; TIM-barrel protein, structural geno | 91.61 | |
| 2otd_A | 247 | Glycerophosphodiester phosphodiesterase; structura | 91.6 | |
| 1k68_A | 140 | Phytochrome response regulator RCPA; phosphorylate | 91.59 | |
| 3dz1_A | 313 | Dihydrodipicolinate synthase; lysine biosynthesis, | 91.58 | |
| 2cw6_A | 298 | Hydroxymethylglutaryl-COA lyase, mitochondrial; HM | 91.56 | |
| 4dpp_A | 360 | DHDPS 2, dihydrodipicolinate synthase 2, chloropla | 91.56 | |
| 2rjn_A | 154 | Response regulator receiver:metal-dependent phosph | 91.52 | |
| 1y0e_A | 223 | Putative N-acetylmannosamine-6-phosphate 2-epimer; | 91.45 | |
| 3heb_A | 152 | Response regulator receiver domain protein (CHEY); | 91.41 | |
| 3mm4_A | 206 | Histidine kinase homolog; receiver domain, CKI1, c | 91.41 | |
| 3s5o_A | 307 | 4-hydroxy-2-oxoglutarate aldolase, mitochondrial; | 91.4 | |
| 1jbe_A | 128 | Chemotaxis protein CHEY; signaling protein; 1.08A | 91.4 | |
| 3ngj_A | 239 | Deoxyribose-phosphate aldolase; lyase, structural | 91.39 | |
| 2i1o_A | 398 | Nicotinate phosphoribosyltransferase; ZIN ION, zin | 91.37 | |
| 3r0j_A | 250 | Possible two component system response transcript | 91.37 | |
| 2qsj_A | 154 | DNA-binding response regulator, LUXR family; struc | 91.36 | |
| 4dad_A | 146 | Putative pilus assembly-related protein; response | 91.36 | |
| 1qkk_A | 155 | DCTD, C4-dicarboxylate transport transcriptional r | 91.34 | |
| 1tv5_A | 443 | Dhodehase, dihydroorotate dehydrogenase homolog, m | 91.33 | |
| 3e96_A | 316 | Dihydrodipicolinate synthase; structural genomics, | 91.33 | |
| 4e7p_A | 150 | Response regulator; DNA binding, cytosol, transcri | 91.33 | |
| 3gt7_A | 154 | Sensor protein; structural genomics, signal receiv | 91.31 | |
| 2vc6_A | 292 | MOSA, dihydrodipicolinate synthase; DHDPS, TIM bar | 91.29 | |
| 1zfj_A | 491 | Inosine monophosphate dehydrogenase; IMPDH, CBS do | 91.24 | |
| 3luf_A | 259 | Two-component system response regulator/ggdef doma | 91.17 | |
| 4ef8_A | 354 | Dihydroorotate dehydrogenase; phenyl isothiocyanat | 91.13 | |
| 3hdg_A | 137 | Uncharacterized protein; two-component sensor acti | 91.08 | |
| 3hv2_A | 153 | Response regulator/HD domain protein; PSI-2, NYSGX | 91.03 | |
| 1mdl_A | 359 | Mandelate racemase; isomerase, mandelate pathway, | 90.94 | |
| 2nx9_A | 464 | Oxaloacetate decarboxylase 2, subunit alpha; carbo | 90.94 | |
| 2zay_A | 147 | Response regulator receiver protein; structural ge | 90.93 | |
| 1vcf_A | 332 | Isopentenyl-diphosphate delta-isomerase; TIM barre | 90.88 | |
| 3b8i_A | 287 | PA4872 oxaloacetate decarboxylase; alpha/beta barr | 90.82 | |
| 3d0c_A | 314 | Dihydrodipicolinate synthase; lysine biosynthesis, | 90.74 | |
| 3g8r_A | 350 | Probable spore coat polysaccharide biosynthesis P; | 90.74 | |
| 3i65_A | 415 | Dihydroorotate dehydrogenase homolog, mitochondria | 90.68 | |
| 1zlp_A | 318 | PSR132, petal death protein; TIM-barrel, helix swa | 90.64 | |
| 2qr3_A | 140 | Two-component system response regulator; structura | 90.61 | |
| 1k66_A | 149 | Phytochrome response regulator RCPB; CHEY homologu | 90.58 | |
| 2yxb_A | 161 | Coenzyme B12-dependent mutase; alpha/beta, structu | 90.49 | |
| 2pz0_A | 252 | Glycerophosphoryl diester phosphodiesterase; glyce | 90.46 | |
| 1kbi_A | 511 | Cytochrome B2, L-LCR; flavocytochrome B2, electron | 90.45 | |
| 2fiq_A | 420 | Putative tagatose 6-phosphate kinase 1; structural | 90.45 | |
| 3qz6_A | 261 | HPCH/HPAI aldolase; structural genomics, PSI-biolo | 90.44 | |
| 3eoo_A | 298 | Methylisocitrate lyase; seattle structural genomic | 90.33 | |
| 2ze3_A | 275 | DFA0005; organic waste LEFT-OVER decomposition, al | 90.13 | |
| 3ajx_A | 207 | 3-hexulose-6-phosphate synthase; HPS, OMPDC supraf | 90.12 | |
| 3o6c_A | 260 | PNP synthase, pyridoxine 5'-phosphate synthase; st | 90.1 | |
| 2qiw_A | 255 | PEP phosphonomutase; structural genomics, joint ce | 90.0 | |
| 1srr_A | 124 | SPO0F, sporulation response regulatory protein; as | 90.0 | |
| 3hgj_A | 349 | Chromate reductase; TIM barrel, oxidoreductase; HE | 89.95 | |
| 2v5b_A | 244 | Triosephosphate isomerase; TIM, unfolding, monotct | 89.88 | |
| 3kcn_A | 151 | Adenylate cyclase homolog; SGX, PSI 2, structural | 89.88 | |
| 1oy0_A | 281 | Ketopantoate hydroxymethyltransferase; domain swap | 89.83 | |
| 3o63_A | 243 | Probable thiamine-phosphate pyrophosphorylase; thi | 89.83 | |
| 1o66_A | 275 | 3-methyl-2-oxobutanoate hydroxymethyltransferase; | 89.79 | |
| 2pl1_A | 121 | Transcriptional regulatory protein PHOP; CHEY-like | 89.74 | |
| 1z41_A | 338 | YQJM, probable NADH-dependent flavin oxidoreductas | 89.73 | |
| 1s2w_A | 295 | Phosphoenolpyruvate phosphomutase; phosphonopyruva | 89.56 | |
| 3kto_A | 136 | Response regulator receiver protein; PSI-II,struct | 89.54 | |
| 1m3u_A | 264 | 3-methyl-2-oxobutanoate hydroxymethyltransferase; | 89.47 | |
| 2ovl_A | 371 | Putative racemase; structural genomics, PSI-2, pro | 89.47 | |
| 1dz3_A | 130 | Stage 0 sporulation protein A; response regulator, | 89.38 | |
| 3ih1_A | 305 | Methylisocitrate lyase; alpha-beta structure, TIM- | 89.36 | |
| 3oa3_A | 288 | Aldolase; structural genomics, seattle structural | 89.23 | |
| 1dos_A | 358 | Aldolase class II; lyase, classii fructose 1,6-bis | 89.22 | |
| 3m5v_A | 301 | DHDPS, dihydrodipicolinate synthase; TIM barrel, c | 89.1 | |
| 1zgz_A | 122 | Torcad operon transcriptional regulatory protein; | 89.09 | |
| 3vkj_A | 368 | Isopentenyl-diphosphate delta-isomerase; type 2 is | 89.07 | |
| 2rdx_A | 379 | Mandelate racemase/muconate lactonizing enzyme, P; | 88.93 | |
| 2nql_A | 388 | AGR_PAT_674P, isomerase/lactonizing enzyme; enolas | 88.92 | |
| 2fli_A | 220 | Ribulose-phosphate 3-epimerase; (beta/alpha)8-barr | 88.86 | |
| 1xhf_A | 123 | DYE resistance, aerobic respiration control protei | 88.84 | |
| 1p4c_A | 380 | L(+)-mandelate dehydrogenase; TIM barrel, hydroxy | 88.83 | |
| 3lte_A | 132 | Response regulator; structural genomics, PSI, prot | 88.82 | |
| 3ks6_A | 250 | Glycerophosphoryl diester phosphodiesterase; struc | 88.74 | |
| 3s5o_A | 307 | 4-hydroxy-2-oxoglutarate aldolase, mitochondrial; | 88.72 | |
| 3l21_A | 304 | DHDPS, dihydrodipicolinate synthase; DAPA, dimer, | 88.69 | |
| 3b2n_A | 133 | Uncharacterized protein Q99UF4; structural genomic | 88.69 | |
| 3flu_A | 297 | DHDPS, dihydrodipicolinate synthase; TIM barrel, b | 88.55 | |
| 3gk0_A | 278 | PNP synthase, pyridoxine 5'-phosphate synthase; de | 88.51 | |
| 1mb3_A | 124 | Cell division response regulator DIVK; signal tran | 88.5 | |
| 1ub3_A | 220 | Aldolase protein; schiff base, deoxyribose phospha | 88.46 | |
| 2a9o_A | 120 | Response regulator; essential protein, YYCF/YYCG h | 88.43 | |
| 2wqp_A | 349 | Polysialic acid capsule biosynthesis protein SIAC; | 88.38 | |
| 4eiv_A | 297 | Deoxyribose-phosphate aldolase; chemotherapy, brai | 88.34 | |
| 3daq_A | 292 | DHDPS, dihydrodipicolinate synthase; lysine biosyn | 88.3 | |
| 1u83_A | 276 | Phosphosulfolactate synthase; structural genomics, | 88.25 | |
| 1rvk_A | 382 | Isomerase/lactonizing enzyme; enolase superfamily, | 88.23 | |
| 3cfy_A | 137 | Putative LUXO repressor protein; structural genomi | 88.22 | |
| 1i3c_A | 149 | Response regulator RCP1; phytochrome, signaling pr | 88.2 | |
| 1yad_A | 221 | Regulatory protein TENI; TIM barrel, transcription | 88.13 | |
| 2tps_A | 227 | Protein (thiamin phosphate synthase); thiamin bios | 88.09 | |
| 3ilh_A | 146 | Two component response regulator; NYSGXRC, PSI-II, | 88.06 | |
| 3tak_A | 291 | DHDPS, dihydrodipicolinate synthase; TIM barrel, l | 88.03 | |
| 1ujp_A | 271 | Tryptophan synthase alpha chain; riken structural | 87.93 | |
| 1a04_A | 215 | Nitrate/nitrite response regulator protein NARL; s | 87.91 | |
| 2nwr_A | 267 | 2-dehydro-3-deoxyphosphooctonate aldolase; KDO, KD | 87.88 | |
| 3cpr_A | 304 | Dihydrodipicolinate synthetase; (beta/alpha)8-barr | 87.84 | |
| 1vli_A | 385 | Spore coat polysaccharide biosynthesis protein SP; | 87.79 | |
| 3fkr_A | 309 | L-2-keto-3-deoxyarabonate dehydratase; DHDPS/NAL f | 87.78 | |
| 3qze_A | 314 | DHDPS, dihydrodipicolinate synthase; alpha beta ba | 87.77 | |
| 3h5i_A | 140 | Response regulator/sensory box protein/ggdef domai | 87.76 | |
| 1f6k_A | 293 | N-acetylneuraminate lyase; beta barrel; 1.60A {Hae | 87.71 | |
| 2qvg_A | 143 | Two component response regulator; NYSGXRC, PSI-2, | 87.7 | |
| 2qzj_A | 136 | Two-component response regulator; 11017X, PSI-II, | 87.66 | |
| 3kyj_B | 145 | CHEY6 protein, putative histidine protein kinase; | 87.57 | |
| 3l12_A | 313 | Putative glycerophosphoryl diester phosphodiester; | 87.51 | |
| 1p6q_A | 129 | CHEY2; chemotaxis, signal transduction, response r | 87.48 | |
| 1zh2_A | 121 | KDP operon transcriptional regulatory protein KDPE | 87.47 | |
| 3m6m_D | 143 | Sensory/regulatory protein RPFC; RPFF, REC, enoyl- | 87.43 | |
| 2vws_A | 267 | YFAU, 2-keto-3-deoxy sugar aldolase; lyase, escher | 87.33 | |
| 2o55_A | 258 | Putative glycerophosphodiester phosphodiesterase; | 87.25 | |
| 2yxg_A | 289 | DHDPS, dihydrodipicolinate synthase; MJ0244, TIM b | 87.21 | |
| 1ea0_A | 1479 | Glutamate synthase [NADPH] large chain; oxidoreduc | 87.13 | |
| 2ehh_A | 294 | DHDPS, dihydrodipicolinate synthase; structural ge | 87.11 | |
| 2qgy_A | 391 | Enolase from the environmental genome shotgun sequ | 87.1 | |
| 3qfe_A | 318 | Putative dihydrodipicolinate synthase family PROT; | 87.07 | |
| 2gkg_A | 127 | Response regulator homolog; social motility, recei | 86.98 | |
| 3l5l_A | 363 | Xenobiotic reductase A; TIM barrel, oxidoreductase | 86.97 | |
| 1s8n_A | 205 | Putative antiterminator; RV1626, structural genomi | 86.97 | |
| 3snk_A | 135 | Response regulator CHEY-like protein; P-loop conta | 86.95 | |
| 3kxq_A | 275 | Triosephosphate isomerase; ssgcid, NIH, niaid, SBR | 86.92 | |
| 3na8_A | 315 | Putative dihydrodipicolinate synthetase; lyase; HE | 86.9 | |
| 2wkj_A | 303 | N-acetylneuraminate lyase; directed evolution, sia | 86.9 | |
| 3jr2_A | 218 | Hexulose-6-phosphate synthase SGBH; 3-keto-L-gulon | 86.89 | |
| 3ozy_A | 389 | Putative mandelate racemase; beta-alpha barrel, en | 86.84 | |
| 2og9_A | 393 | Mandelate racemase/muconate lactonizing enzyme; NY | 86.82 | |
| 3dz1_A | 313 | Dihydrodipicolinate synthase; lysine biosynthesis, | 86.73 | |
| 1o5k_A | 306 | DHDPS, dihydrodipicolinate synthase; TM1521, struc | 86.59 |
| >3bo9_A Putative nitroalkan dioxygenase; TM0800, structural genomics center for structural genomics, JCSG, protein structure INI PSI-2; HET: MSE 2PE; 2.71A {Thermotoga maritima MSB8} | Back alignment and structure |
|---|
Probab=100.00 E-value=5.8e-52 Score=388.69 Aligned_cols=300 Identities=35% Similarity=0.552 Sum_probs=259.9
Q ss_pred chhhcCCccceecCCCCCCCCcHHHHHHHHhCCCceeecCCCCCCHHHHHHHHHHHHhhcCCcEEEEeecCCC-CHHHHH
Q 020013 3 WRGMLGFEYGIVQAPLGPDISGPELVAAVANAGGLGLLRAPDWEAPDYLRDLIRKTRSLTERPFGVGVVLAFP-HNENIK 81 (332)
Q Consensus 3 ~~~~l~~~~Pii~apM~~g~s~~~la~avs~aGglG~i~~~~~~~~e~~~~~i~~~r~~~~~p~gvnl~~~~~-~~~~~~ 81 (332)
|+++|+++|||||+||+ |+++++++.+++++|++|++... +.+++.+++.++++++.++.||+||+++..+ ..+.++
T Consensus 19 ~~~~l~~~~Pii~apM~-gvs~~~la~av~~aGglG~i~~~-~~~~~~l~~~i~~i~~~~~~p~gVnl~~~~~~~~~~~~ 96 (326)
T 3bo9_A 19 VTDLLEIEHPILMGGMA-WAGTPTLAAAVSEAGGLGIIGSG-AMKPDDLRKAISELRQKTDKPFGVNIILVSPWADDLVK 96 (326)
T ss_dssp HHHHHTCSSSEEECCCT-TTSCHHHHHHHHHTTSBEEEECT-TCCHHHHHHHHHHHHTTCSSCEEEEEETTSTTHHHHHH
T ss_pred hHHhcCCCCCEEECCCC-CCCCHHHHHHHHhCCCcEEeCCC-CCCHHHHHHHHHHHHHhcCCCEEEEEeccCCCHHHHHH
Confidence 67899999999999998 79999999999999999999874 6799999999999999888999999998544 357788
Q ss_pred HHHhcCCcEEEEccCCCcHHHHHHHHhCCCEEEEecCCHHHHHHHHHcCCCEEEEecCCCCcccCCCCchhhhHHHHHHH
Q 020013 82 AILSEKVAVLQVSWGEYSEELVLEAHSAGVKVVPQVGSFDEARKAVNAGVDAIIVQGREAGGHVIGQDGLISLLPMVVDL 161 (332)
Q Consensus 82 ~~~~~~~~~I~~~~g~~~~~~i~~~~~~g~~v~~~v~s~~~a~~a~~~g~D~ivv~G~eaGGh~~~~~~~~~ll~~i~~~ 161 (332)
.+.+.++++|++++++ |.++++.+++.|+++++.+++.++++.+.+.|+|+|+++|.++|||. +...++.+++++++.
T Consensus 97 ~~~~~g~d~V~l~~g~-p~~~~~~l~~~g~~v~~~v~s~~~a~~a~~~GaD~i~v~g~~~GG~~-G~~~~~~ll~~i~~~ 174 (326)
T 3bo9_A 97 VCIEEKVPVVTFGAGN-PTKYIRELKENGTKVIPVVASDSLARMVERAGADAVIAEGMESGGHI-GEVTTFVLVNKVSRS 174 (326)
T ss_dssp HHHHTTCSEEEEESSC-CHHHHHHHHHTTCEEEEEESSHHHHHHHHHTTCSCEEEECTTSSEEC-CSSCHHHHHHHHHHH
T ss_pred HHHHCCCCEEEECCCC-cHHHHHHHHHcCCcEEEEcCCHHHHHHHHHcCCCEEEEECCCCCccC-CCccHHHHHHHHHHH
Confidence 8999999999999886 68899999999999999999999999999999999999999999997 556789999999988
Q ss_pred hCCCCCcEEeecCcCCHHHHHHHHHcCcceeeeccccccCccCCCCHHHHHHHhcCCCceEEEEecccCCCCCCceeecC
Q 020013 162 IGDRDIPIIAAGGIVDARGYVAALSLGAQGICLGTRFVASEESYAHPEYKRKLVEMDKTEYTDVFGRARWPGAPHRVLQT 241 (332)
Q Consensus 162 ~~~~~iPviaaGGI~~~~~v~~al~~GA~gV~~GT~fl~t~Es~~~~~~k~~~~~~~~t~~t~~~~~~~~~g~~~R~l~n 241 (332)
+ ++|||++|||.+++|+.+++++||+||++||+|+.++||..++.||++++++.++++....+ .+|+|.|+|+|
T Consensus 175 ~---~iPviaaGGI~~~~dv~~al~~GA~gV~vGs~~~~~~e~~~~~~~k~~~~~~~~~~~~~~~~---~~G~p~R~l~n 248 (326)
T 3bo9_A 175 V---NIPVIAAGGIADGRGMAAAFALGAEAVQMGTRFVASVESDVHPVYKEKIVKASIRDTVVTGA---KLGHPARVLRT 248 (326)
T ss_dssp C---SSCEEEESSCCSHHHHHHHHHHTCSEEEESHHHHTBSSCCSCHHHHHHHHHCCTTCEEEECT---TTTCCEEEECC
T ss_pred c---CCCEEEECCCCCHHHHHHHHHhCCCEEEechHHHcCccccccHHHHHHHHhcccccEEEecc---cCCCceEEEec
Confidence 7 79999999999999999999999999999999999999999999999999987776554444 35999999999
Q ss_pred hHHHhhhcCCCCCccCCCcccccccccchHHHHHHhhCCCCcccccCCccceeeeccccccccCCCCCHHHHHHHHHHHH
Q 020013 242 PFFSNWKNIPAHENEVNQPIIGRSTIHGIEKKIHRLAGTVPNVTTTGDIDSMVMFAGEGVGLIREILPAGEVVKQLVEGA 321 (332)
Q Consensus 242 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gd~~~~~~~aG~~~~~i~~i~~~~~iv~~l~~e~ 321 (332)
+|+++|.+... ..++. ++++. .+.++++..+||.|.+.+|+||++++++++.|++|||++|++|+
T Consensus 249 ~~~~~~~~~~~----~~~~~-----~~~~~------~~~~~~~~~~g~~~~~~~~aGq~~~~i~~i~~~~eiv~~l~~e~ 313 (326)
T 3bo9_A 249 PFARKIQEMEF----ENPMQ-----AEEML------VGSLRRAVVEGDLERGSFMVGQSAGLIDEIKPVKQIIEDILKEF 313 (326)
T ss_dssp HHHHHHHHHHH----HCHHH-----HHHHH------TTHHHHHHTTCCTTTCCCBCCGGGGGCCSCBCHHHHHHHHHHHH
T ss_pred HHHHHhhhccC----CCHHH-----HHHHc------cchHHHHHHcCCcccceEEcccChhhcCCCCcHHHHHHHHHHHH
Confidence 99999875311 01111 11111 01122355789999999999999999999999999999999999
Q ss_pred HHHHHh
Q 020013 322 QLLVHT 327 (332)
Q Consensus 322 ~~~~~~ 327 (332)
.+++.+
T Consensus 314 ~~~~~~ 319 (326)
T 3bo9_A 314 KETVEK 319 (326)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 998765
|
| >2gjl_A Hypothetical protein PA1024; 2-nitropropane dioxygenase, 2-nitropropane, FMN, oxidoreduct; HET: FMN; 2.00A {Pseudomonas aeruginosa PAO1} PDB: 2gjn_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=5.1e-51 Score=383.05 Aligned_cols=304 Identities=33% Similarity=0.428 Sum_probs=257.8
Q ss_pred chhhcCCccceecCCCCCCCCcHHHHHHHHhCCCceeecCCCCCCHHHHHHHHHHHHhhcCCcEEEEeecC----CC-CH
Q 020013 3 WRGMLGFEYGIVQAPLGPDISGPELVAAVANAGGLGLLRAPDWEAPDYLRDLIRKTRSLTERPFGVGVVLA----FP-HN 77 (332)
Q Consensus 3 ~~~~l~~~~Pii~apM~~g~s~~~la~avs~aGglG~i~~~~~~~~e~~~~~i~~~r~~~~~p~gvnl~~~----~~-~~ 77 (332)
|+++|+++|||||+||. |+++++++.+++++|++|++....+.+++.+++.++++++.++.||++|++++ .+ ..
T Consensus 8 ~~~~l~~~~Pii~apM~-gvs~~~la~av~~aGglG~i~~~~~~s~~~l~~~i~~i~~~~~~p~~v~l~v~~~~~~~~~~ 86 (328)
T 2gjl_A 8 FTETFGVEHPIMQGGMQ-WVGRAEMAAAVANAGGLATLSALTQPSPEALAAEIARCRELTDRPFGVNLTLLPTQKPVPYA 86 (328)
T ss_dssp HHHHHTCSSSEEECCCT-TTCSHHHHHHHHHTTSBCEEETTTSSSHHHHHHHHHHHHHHCSSCCEEEEEECCCSSCCCHH
T ss_pred HHHHhCCCCCEEECCCC-CCCcHHHHHHHHHCCCeEEeCCCCCCCHHHHHHHHHHHHHhcCCCeEEEEeccccccCccHH
Confidence 78899999999999998 79999999999999999999875555699999999999998889999999997 33 35
Q ss_pred HHHHHHHhcCCcEEEEccCCCcHHHHHHHHhCCCEEEEecCCHHHHHHHHHcCCCEEEEecCCCCcccCC-CCchhhhHH
Q 020013 78 ENIKAILSEKVAVLQVSWGEYSEELVLEAHSAGVKVVPQVGSFDEARKAVNAGVDAIIVQGREAGGHVIG-QDGLISLLP 156 (332)
Q Consensus 78 ~~~~~~~~~~~~~I~~~~g~~~~~~i~~~~~~g~~v~~~v~s~~~a~~a~~~g~D~ivv~G~eaGGh~~~-~~~~~~ll~ 156 (332)
+.++.+.+.++++|++++++ |.++++.+++.|++++..+++.++++.+++.|+|+|+++|.++|||.+. ....+.+++
T Consensus 87 ~~~~~~~~~g~d~V~~~~g~-p~~~~~~l~~~gi~vi~~v~t~~~a~~~~~~GaD~i~v~g~~~GG~~G~~~~~~~~~l~ 165 (328)
T 2gjl_A 87 EYRAAIIEAGIRVVETAGND-PGEHIAEFRRHGVKVIHKCTAVRHALKAERLGVDAVSIDGFECAGHPGEDDIPGLVLLP 165 (328)
T ss_dssp HHHHHHHHTTCCEEEEEESC-CHHHHHHHHHTTCEEEEEESSHHHHHHHHHTTCSEEEEECTTCSBCCCSSCCCHHHHHH
T ss_pred HHHHHHHhcCCCEEEEcCCC-cHHHHHHHHHcCCCEEeeCCCHHHHHHHHHcCCCEEEEECCCCCcCCCCccccHHHHHH
Confidence 78899999999999999886 6789999999999999999999999999999999999999999999622 236789999
Q ss_pred HHHHHhCCCCCcEEeecCcCCHHHHHHHHHcCcceeeeccccccCccCCCCHHHHHHHhcCCCceEEEEecccCCCCCCc
Q 020013 157 MVVDLIGDRDIPIIAAGGIVDARGYVAALSLGAQGICLGTRFVASEESYAHPEYKRKLVEMDKTEYTDVFGRARWPGAPH 236 (332)
Q Consensus 157 ~i~~~~~~~~iPviaaGGI~~~~~v~~al~~GA~gV~~GT~fl~t~Es~~~~~~k~~~~~~~~t~~t~~~~~~~~~g~~~ 236 (332)
++++.+ ++||+++|||.+++++.+++++|||+|++||+|+.+.||..++.||++++++.++++..... ..|.|.
T Consensus 166 ~v~~~~---~iPviaaGGI~~~~~v~~al~~GAdgV~vGs~~~~~~e~~~~~~~k~~~~~~~~~~~~~~~~---~~g~~~ 239 (328)
T 2gjl_A 166 AAANRL---RVPIIASGGFADGRGLVAALALGADAINMGTRFLATRECPIHPAVKAAIRAADERSTDLIMR---SLRNTA 239 (328)
T ss_dssp HHHTTC---CSCEEEESSCCSHHHHHHHHHHTCSEEEESHHHHTSSSSCSCHHHHHHHHHCCTTCEEEECG---GGTCCE
T ss_pred HHHHhc---CCCEEEECCCCCHHHHHHHHHcCCCEEEECHHHHcCccccccHHHHHHHHhcccccEEEeec---cCCCce
Confidence 998876 79999999999999999999999999999999999999999999999999986666443333 248999
Q ss_pred eeecChHHHhhhcCCCCCccCCCcccccccccch-HHHHHHhhCCCCcccccCCccceeeeccccccccCCCCCHHHHHH
Q 020013 237 RVLQTPFFSNWKNIPAHENEVNQPIIGRSTIHGI-EKKIHRLAGTVPNVTTTGDIDSMVMFAGEGVGLIREILPAGEVVK 315 (332)
Q Consensus 237 R~l~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~gd~~~~~~~aG~~~~~i~~i~~~~~iv~ 315 (332)
|+++|+|+++|.+.+..... .++.+ ++.. ...++ .+..+||.|.+.+|+||++++++++.|++|||+
T Consensus 240 r~~~n~~~~~~~~~~~~~~~-~~~~~----~~~~~~~~~~-------~a~~~g~~~~~~~~aG~~~~~~~~~~~~~ei~~ 307 (328)
T 2gjl_A 240 RVARNAISQEVLAIEARGGA-GYADI----AALVSGQRGR-------QVYQQGDTDLGIWSAGMVQGLIDDEPACAELLR 307 (328)
T ss_dssp EEECSHHHHHHHHHHHTSCC-CGGGT----HHHHCHHHHH-------HHHHHCCTTSSCCBCCGGGGGCCCCCCHHHHHH
T ss_pred EEEcCHHHHHHHhhhhccCC-ChHHH----HHHHhhHHHH-------HHHHcCCccceEEEcccchhhcCCCCCHHHHHH
Confidence 99999999999754322110 12211 1101 11222 245689999999999999999999999999999
Q ss_pred HHHHHHHHHHH
Q 020013 316 QLVEGAQLLVH 326 (332)
Q Consensus 316 ~l~~e~~~~~~ 326 (332)
+|++|+.+++.
T Consensus 308 ~l~~e~~~~~~ 318 (328)
T 2gjl_A 308 DIVEQARQLVR 318 (328)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 99999999887
|
| >2z6i_A Trans-2-enoyl-ACP reductase II; fatty acid synthesis, antibiotics, oxidoreductase, flavoprotein; HET: FMN; 1.70A {Streptococcus pneumoniae} PDB: 2z6j_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.5e-50 Score=380.39 Aligned_cols=305 Identities=31% Similarity=0.519 Sum_probs=260.3
Q ss_pred cchhhcCCccceecCCCCCCCCcHHHHHHHHhCCCceeecCCCCCCHHHHHHHHHHHHhhcCCcEEEEeecCCCC-HHHH
Q 020013 2 GWRGMLGFEYGIVQAPLGPDISGPELVAAVANAGGLGLLRAPDWEAPDYLRDLIRKTRSLTERPFGVGVVLAFPH-NENI 80 (332)
Q Consensus 2 ~~~~~l~~~~Pii~apM~~g~s~~~la~avs~aGglG~i~~~~~~~~e~~~~~i~~~r~~~~~p~gvnl~~~~~~-~~~~ 80 (332)
.|+++|+++||||++||. |+++++++.+++++|++|++..+ +.+++.+++.++++++.++.||+||+++..+. .+.+
T Consensus 4 ~~~~~l~~~~Pii~apM~-g~s~~~la~av~~aG~lG~i~~~-~~~~~~~~~~i~~i~~~~~~p~gvnl~~~~~~~~~~~ 81 (332)
T 2z6i_A 4 RITELLKIDYPIFQGGMA-WVADGDLAGAVSKAGGLGIIGGG-NAPKEVVKANIDKIKSLTDKPFGVNIMLLSPFVEDIV 81 (332)
T ss_dssp HHHHHHTCSSSEEECCCT-TTCCHHHHHHHHHHTSBEEEECT-TCCHHHHHHHHHHHHHHCCSCEEEEECTTSTTHHHHH
T ss_pred hhhHHhCCCCCEEeCCCC-CCCcHHHHHHHHhCCCcEEeCCC-CCCHHHHHHHHHHHHHhcCCCEEEEecCCCCCHHHHH
Confidence 378999999999999998 79999999999999999999875 67999999999999998889999999985443 5678
Q ss_pred HHHHhcCCcEEEEccCCCcHHHHHHHHhCCCEEEEecCCHHHHHHHHHcCCCEEEEecCCCCcccCCCCchhhhHHHHHH
Q 020013 81 KAILSEKVAVLQVSWGEYSEELVLEAHSAGVKVVPQVGSFDEARKAVNAGVDAIIVQGREAGGHVIGQDGLISLLPMVVD 160 (332)
Q Consensus 81 ~~~~~~~~~~I~~~~g~~~~~~i~~~~~~g~~v~~~v~s~~~a~~a~~~g~D~ivv~G~eaGGh~~~~~~~~~ll~~i~~ 160 (332)
+.+.+.++|+|++++|. |.++++.+++.|++++..+.++++++.+.+.|+|+|+++|.++|||. +...++.+++++++
T Consensus 82 ~~a~~~g~d~V~~~~g~-p~~~i~~l~~~g~~v~~~v~~~~~a~~~~~~GaD~i~v~g~~~GG~~-g~~~~~~ll~~i~~ 159 (332)
T 2z6i_A 82 DLVIEEGVKVVTTGAGN-PSKYMERFHEAGIIVIPVVPSVALAKRMEKIGADAVIAEGMEAGGHI-GKLTTMTLVRQVAT 159 (332)
T ss_dssp HHHHHTTCSEEEECSSC-GGGTHHHHHHTTCEEEEEESSHHHHHHHHHTTCSCEEEECTTSSEEC-CSSCHHHHHHHHHH
T ss_pred HHHHHCCCCEEEECCCC-hHHHHHHHHHcCCeEEEEeCCHHHHHHHHHcCCCEEEEECCCCCCCC-CCccHHHHHHHHHH
Confidence 88999999999999875 67889999999999999999999999999999999999999999997 45577899999998
Q ss_pred HhCCCCCcEEeecCcCCHHHHHHHHHcCcceeeeccccccCccCCCCHHHHHHHhcCCCceEEEEecccCCCCCCceeec
Q 020013 161 LIGDRDIPIIAAGGIVDARGYVAALSLGAQGICLGTRFVASEESYAHPEYKRKLVEMDKTEYTDVFGRARWPGAPHRVLQ 240 (332)
Q Consensus 161 ~~~~~~iPviaaGGI~~~~~v~~al~~GA~gV~~GT~fl~t~Es~~~~~~k~~~~~~~~t~~t~~~~~~~~~g~~~R~l~ 240 (332)
.+ ++|||++|||.+++++.+++++|||+|+|||+|+.++|+..++.||+++++++++++..... ..|+|.|+++
T Consensus 160 ~~---~iPViaaGGI~~~~~~~~al~~GAdgV~vGs~~l~~~e~~~~~~~k~~~~~~~~~d~~~~~~---~~g~~~r~l~ 233 (332)
T 2z6i_A 160 AI---SIPVIAAGGIADGEGAAAGFMLGAEAVQVGTRFVVAKESNAHPNYKEKILKARDIDTTISAQ---HFGHAVRAIK 233 (332)
T ss_dssp HC---SSCEEEESSCCSHHHHHHHHHTTCSEEEECHHHHTBTTCCSCHHHHHHHHHCCTTCEEEESG---GGTCCEEEEC
T ss_pred hc---CCCEEEECCCCCHHHHHHHHHcCCCEEEecHHHhcCccccccHHHHHHHHhCCCcCEEEECC---cCCCcEEEEe
Confidence 87 79999999999999999999999999999999999999999999999999987666443322 3589999999
Q ss_pred ChHHHhhhcCC-----CCCccCCCcccccccccchHHHHHHhhCCCCcccccCCccceeeeccccccccCCCCCHHHHHH
Q 020013 241 TPFFSNWKNIP-----AHENEVNQPIIGRSTIHGIEKKIHRLAGTVPNVTTTGDIDSMVMFAGEGVGLIREILPAGEVVK 315 (332)
Q Consensus 241 n~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gd~~~~~~~aG~~~~~i~~i~~~~~iv~ 315 (332)
|+|+++|.+.+ ... ..++. ++++. ...++.+..+||.|.+.+|+||++++++++.|++||++
T Consensus 234 n~~~~~~~~~~~~~~~~~~--~~~~~-----~~~~~------~~~~~~a~~~g~~~~~~~~aG~~~~~~~~~~~~~ei~~ 300 (332)
T 2z6i_A 234 NQLTRDFELAEKDAFKQED--PDLEI-----FEQMG------AGALAKAVVHGDVDGGSVMAGQIAGLVSKEETAEEILK 300 (332)
T ss_dssp SHHHHHHHHHHHHHHTC-----CCHH-----HHHHH------TTHHHHHHTTCCTTTSCCBCCGGGGGCCCCBCHHHHHH
T ss_pred CHHHHHHHhhccccccccC--CCHHH-----HHHHc------cchHHHHHHcCCcccceEecCcChhhcCCCCCHHHHHH
Confidence 99999987543 110 01111 11111 01112355789999999999999999999999999999
Q ss_pred HHHHHHHHHHHhhh
Q 020013 316 QLVEGAQLLVHTKF 329 (332)
Q Consensus 316 ~l~~e~~~~~~~~~ 329 (332)
+|++|+.+++.+++
T Consensus 301 ~l~~e~~~~~~~~~ 314 (332)
T 2z6i_A 301 DLYYGAAKKIQEEA 314 (332)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 99999999988754
|
| >3bw2_A 2-nitropropane dioxygenase; TIM barrel, oxidoreductase; HET: FMN; 2.10A {Streptomyces ansochromogenes} PDB: 3bw4_A* 3bw3_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=7.2e-49 Score=373.98 Aligned_cols=301 Identities=34% Similarity=0.518 Sum_probs=255.0
Q ss_pred chhhcCCccceecCCCCCCCCcHHHHHHHHhCCCceeecCCCCCCHHHHHHHHHHHHhhcCCcEEEEeecCCC-------
Q 020013 3 WRGMLGFEYGIVQAPLGPDISGPELVAAVANAGGLGLLRAPDWEAPDYLRDLIRKTRSLTERPFGVGVVLAFP------- 75 (332)
Q Consensus 3 ~~~~l~~~~Pii~apM~~g~s~~~la~avs~aGglG~i~~~~~~~~e~~~~~i~~~r~~~~~p~gvnl~~~~~------- 75 (332)
|+++| +|||||+||++|+++++|+++|+++||+|++.. ++.+++.+++.++++++.++.||+||++++.+
T Consensus 5 ~~~~~--~~Pii~apMaggvs~~~la~av~~aGglG~i~~-~~~s~~~l~~~i~~~~~~~~~p~gVnl~~~~~~~~~~~~ 81 (369)
T 3bw2_A 5 LTDLF--PLPIVQAPMAGGVSVPQLAAAVCEAGGLGFLAA-GYKTADGMYQEIKRLRGLTGRPFGVNVFMPQPELAESGA 81 (369)
T ss_dssp TTTSS--SSSEEECCCTTTTSCHHHHHHHHHTTSBEEEEC-TTSCHHHHHHHHHHHHHHCCSCEEEEEECCCCCC---CH
T ss_pred hhhhC--cCCEEeCCCCCCCCcHHHHHHHHHCCCEEEcCC-CCCCHHHHHHHHHHHHHhCCCCeEEEEecCCCCcccHHH
Confidence 56777 899999999856999999999999999999987 47899999999999999988999999998654
Q ss_pred -----------------------------CHHHHHHHHhcCCcEEEEccCCCcHHHHHHHHhCCCEEEEecCCHHHHHHH
Q 020013 76 -----------------------------HNENIKAILSEKVAVLQVSWGEYSEELVLEAHSAGVKVVPQVGSFDEARKA 126 (332)
Q Consensus 76 -----------------------------~~~~~~~~~~~~~~~I~~~~g~~~~~~i~~~~~~g~~v~~~v~s~~~a~~a 126 (332)
.++.++.+.+.++++|++++|.++.++++.+++.|++++..++++++++.+
T Consensus 82 ~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~~~V~~~~g~~~~~~i~~~~~~g~~v~~~v~t~~~a~~a 161 (369)
T 3bw2_A 82 VEVYAHQLAGEAAWYETELGDPDGGRDDGYDAKLAVLLDDPVPVVSFHFGVPDREVIARLRRAGTLTLVTATTPEEARAV 161 (369)
T ss_dssp HHHHHHHTHHHHHHTTCCCCCSCSCSSTTHHHHHHHHHHSCCSEEEEESSCCCHHHHHHHHHTTCEEEEEESSHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCCcCcccccccccHHHHHHHHHhcCCCEEEEeCCCCcHHHHHHHHHCCCeEEEECCCHHHHHHH
Confidence 145678888999999999998877889999999999999999999999999
Q ss_pred HHcCCCEEEEecCCCCcccCCC----------CchhhhHHHHHHHhCCCCCcEEeecCcCCHHHHHHHHHcCcceeeecc
Q 020013 127 VNAGVDAIIVQGREAGGHVIGQ----------DGLISLLPMVVDLIGDRDIPIIAAGGIVDARGYVAALSLGAQGICLGT 196 (332)
Q Consensus 127 ~~~g~D~ivv~G~eaGGh~~~~----------~~~~~ll~~i~~~~~~~~iPviaaGGI~~~~~v~~al~~GA~gV~~GT 196 (332)
++.|+|+|+++|+++|||.+.. ...+.+++++++.+ ++|||++|||.+++++.+++++|||+|+|||
T Consensus 162 ~~~GaD~i~v~g~~~GGh~g~~~~~~~~~~~~~~~~~~l~~i~~~~---~iPViaaGGI~~~~~~~~~l~~GAd~V~vGs 238 (369)
T 3bw2_A 162 EAAGADAVIAQGVEAGGHQGTHRDSSEDDGAGIGLLSLLAQVREAV---DIPVVAAGGIMRGGQIAAVLAAGADAAQLGT 238 (369)
T ss_dssp HHTTCSEEEEECTTCSEECCCSSCCGGGTTCCCCHHHHHHHHHHHC---SSCEEEESSCCSHHHHHHHHHTTCSEEEESH
T ss_pred HHcCCCEEEEeCCCcCCcCCCcccccccccccccHHHHHHHHHHhc---CceEEEECCCCCHHHHHHHHHcCCCEEEECh
Confidence 9999999999999999996321 23488899998876 7999999999999999999999999999999
Q ss_pred ccccCccCCCCHHHHHHHhcCCCceEEEEecccCCCCCCceeecChHHHhhhcCCCCCccCCCcccccccccchHHHHHH
Q 020013 197 RFVASEESYAHPEYKRKLVEMDKTEYTDVFGRARWPGAPHRVLQTPFFSNWKNIPAHENEVNQPIIGRSTIHGIEKKIHR 276 (332)
Q Consensus 197 ~fl~t~Es~~~~~~k~~~~~~~~t~~t~~~~~~~~~g~~~R~l~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 276 (332)
+|+.++|+..++.||+.++++..+++.... ...|+|.|+++|+|+++|...+. ..+|. ++.+...+++
T Consensus 239 ~~~~~~e~~~~~~~k~~i~~~~~~~~~~~~---~~~g~~~r~~~n~~~~~~~~~~~----~~~~~-----~~~~~~~~~~ 306 (369)
T 3bw2_A 239 AFLATDESGAPGPHKRALTDPLFARTRLTR---AFTGRPARSLVNRFLREHGPYAP----AAYPD-----VHHLTSPLRK 306 (369)
T ss_dssp HHHTSTTCCCCHHHHHHTTCGGGCCEEEES---TTTSSCEEEECCHHHHHHGGGCC----SCTTH-----HHHHHHHHHH
T ss_pred HHhCCcccCccHHHHHHHHhCcCCCEEEEe---ccCCCcEEEEeCHHHHHhhccCC----CChHH-----HHHHHHHHHH
Confidence 999999999999999999998644322211 23589999999999999875432 12332 2223334433
Q ss_pred hhCCCCcccccCCccceeeeccccccccCCCCCHHHHHHHHHHHHHHHHHhh
Q 020013 277 LAGTVPNVTTTGDIDSMVMFAGEGVGLIREILPAGEVVKQLVEGAQLLVHTK 328 (332)
Q Consensus 277 ~~~~~~~~~~~gd~~~~~~~aG~~~~~i~~i~~~~~iv~~l~~e~~~~~~~~ 328 (332)
. +...||.|++.+|+||+++++++ .|++|||++|++|+++++.+.
T Consensus 307 ~------~~~~g~~~~~~~~aGq~~~~~~~-~~~~eiv~~l~~e~~~~~~~~ 351 (369)
T 3bw2_A 307 A------AAKAGDAQGMALWAGQGHRMARE-LPAGRLVEVLAAELAEARTAL 351 (369)
T ss_dssp H------HHHHTCGGGSCCBCCTTGGGCCC-SCHHHHHHHHHHHHHHHHHHT
T ss_pred H------HHhcCChhhEeEEcccccCcCCC-CcHHHHHHHHHHHHHHHHHHH
Confidence 2 34679999999999999999998 899999999999999988664
|
| >2uva_G Fatty acid synthase beta subunits; fungal, dehydratase, enoyl reductase, ketoacyl synthase, ketoacyl reductase; HET: FMN; 3.10A {Thermomyces lanuginosus} PDB: 2uvc_G* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.3e-41 Score=375.03 Aligned_cols=303 Identities=19% Similarity=0.196 Sum_probs=239.3
Q ss_pred cchhhcCCccceecCCCCCCCCcHHHHHHHHhCCCceeecCCCCCCHHHHHHHHHHHHhhc--CCcEEEEeecCCCC---
Q 020013 2 GWRGMLGFEYGIVQAPLGPDISGPELVAAVANAGGLGLLRAPDWEAPDYLRDLIRKTRSLT--ERPFGVGVVLAFPH--- 76 (332)
Q Consensus 2 ~~~~~l~~~~Pii~apM~~g~s~~~la~avs~aGglG~i~~~~~~~~e~~~~~i~~~r~~~--~~p~gvnl~~~~~~--- 76 (332)
.|++++| ++|||||||++++++++||+||+++||+|+|...++.+++.+++.++++|+.+ ++||++|+++..+.
T Consensus 575 ~~t~~lg-~~PIi~a~M~~~vs~~~LaaAva~aGglG~i~g~g~~~~e~l~~~i~~vk~~~~~~~p~gvN~~~~~p~~~~ 653 (2060)
T 2uva_G 575 KMSRLLG-VPPVMVAGMTPTTVPWDFVAATMNAGYHIELAGGGYYNAQKMSDAISKIEKAIPPGRGITVNLIYVNPRAMG 653 (2060)
T ss_dssp HHHHHHT-SCSEEECCCTTTTCSHHHHHHHHHTTCEECEEGGGCCSHHHHHHHHHHHGGGSCTTCCEEEEEETTCTTHHH
T ss_pred hhhhccc-cceEEecCCCCccccHHHHHHHHHCCCEEEECcCCCCCHHHHHHHHHHHHhhcccCCCeEecccccCcccch
Confidence 3678999 99999999987799999999999999999993335789999999999999988 69999999987664
Q ss_pred --HHHHHHHHhcCCcE--EEEccCCCcH-HHHHHHHhCCCEEEEecCCHHHHHHH----HHcCCCEEE---EecCCCCcc
Q 020013 77 --NENIKAILSEKVAV--LQVSWGEYSE-ELVLEAHSAGVKVVPQVGSFDEARKA----VNAGVDAII---VQGREAGGH 144 (332)
Q Consensus 77 --~~~~~~~~~~~~~~--I~~~~g~~~~-~~i~~~~~~g~~v~~~v~s~~~a~~a----~~~g~D~iv---v~G~eaGGh 144 (332)
.+.++.+.+.++++ |.+++|.+.. +.++.+++.|+++++.+++.++++++ .++|+|+|| ++|.++|||
T Consensus 654 ~~~~~~~~~~~~gv~i~gv~~~~G~p~~e~~~~~l~~~gi~~i~~v~~~~~a~~~v~~l~~aG~D~iV~~q~~G~eaGGH 733 (2060)
T 2uva_G 654 WQIPLLGRLRADGVPIEGLTIGAGVPSIEVANEYIQTLGIRHISFKPGSVDAIQQVINIAKANPTFPIILQWTGGRGGGH 733 (2060)
T ss_dssp HHHHHHHHHHTTTCCEEEEEEESSCCCHHHHHHHHHHSCCSEEEECCCSHHHHHHHHHHHHHCTTSCEEEEECCTTSSSS
T ss_pred hHHHHHHHHHHcCCCcceEeecCCCCCHHHHHHHHHHcCCeEEEecCCHHHHHHHHHHHHHcCCCEEEEeeeEcccCCCC
Confidence 25678899999999 9999998654 58889999999999999999988877 899999999 999999999
Q ss_pred cCCC---CchhhhHHHHHHHhCCCCCcEEeecCcCCHHHHHHHH-----------HcCcceeeeccccccCccCCCCHHH
Q 020013 145 VIGQ---DGLISLLPMVVDLIGDRDIPIIAAGGIVDARGYVAAL-----------SLGAQGICLGTRFVASEESYAHPEY 210 (332)
Q Consensus 145 ~~~~---~~~~~ll~~i~~~~~~~~iPviaaGGI~~~~~v~~al-----------~~GA~gV~~GT~fl~t~Es~~~~~~ 210 (332)
.+.. .+++.+++++++.+ ++|||++|||+|+++++++| ++|||||+|||+|+.|+||++|+.|
T Consensus 734 ~g~~d~~~~~l~lv~~i~~~~---~ipviaaGGI~~g~~i~aaltg~ws~~~g~palGAdgV~~GT~f~~t~Ea~~s~~~ 810 (2060)
T 2uva_G 734 HSFEDFHQPILLMYSRIRKCS---NIVLVAGSGFGGSEDTYPYLTGSWSTKFGYPPMPFDGCMFGSRMMTAKEAHTSKQA 810 (2060)
T ss_dssp CCSCCSHHHHHHHHHHHHTST---TEEEEEESSCCSHHHHHHHHHTCGGGTTTSCCCCCSCEEESGGGGGBTTSCCCHHH
T ss_pred CCcccccchHHHHHHHHHHHc---CCCEEEeCCCCCHHHHHHHhcCcchhhcCCCCCCCCEEEEchhhhcCcCCCCCHHH
Confidence 7322 35688999999987 79999999999999999999 9999999999999999999999999
Q ss_pred HHHHhcCCCceE-------------EEEecccCCCCCCceeecChHHHhhhcCCCCCccCCCcccccccccchHHHHHHh
Q 020013 211 KRKLVEMDKTEY-------------TDVFGRARWPGAPHRVLQTPFFSNWKNIPAHENEVNQPIIGRSTIHGIEKKIHRL 277 (332)
Q Consensus 211 k~~~~~~~~t~~-------------t~~~~~~~~~g~~~R~l~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 277 (332)
|++|++++++++ ...+ +...|+|.|+|+|+|++.|.+++.... .+|. ....+++.. +++.
T Consensus 811 K~~lv~a~~~dt~~w~~~~~~~~ggv~t~--~s~~G~p~R~l~n~~~~~~~~~~~~~~--~~~~--~~~~~~l~~-~~~~ 883 (2060)
T 2uva_G 811 KQAIVDAPGVDDDQWENTYKRPTGGVITV--LSEMGEPIHKLATRGVLFWKELDDKIF--SLDR--SKRVAELKK-RRDY 883 (2060)
T ss_dssp HHHHHTSCCCCSTTSGGGGTSCCTTEEEE--ECSSSCEEEEECCHHHHHHHHHHHHTT--TSCH--HHHHHHHHH-SHHH
T ss_pred HHHHHhCCcccccchhccccCCCceEEEe--cccCCCCeEEEeCHHHHHHHhhhhccc--CCCh--HHHHHHHHH-HHHH
Confidence 999999876553 2221 123599999999999999975432111 1110 001111111 2211
Q ss_pred hCCCCcccccCCcccee---eeccccccccCCCCCHHHHHHHHHHHH
Q 020013 278 AGTVPNVTTTGDIDSMV---MFAGEGVGLIREILPAGEVVKQLVEGA 321 (332)
Q Consensus 278 ~~~~~~~~~~gd~~~~~---~~aG~~~~~i~~i~~~~~iv~~l~~e~ 321 (332)
. ....+||.+.+. +++|+++++ +++|++||+++|++++
T Consensus 884 ~----~~~~~~d~~~~~~G~~~~G~~~~~--~~~~~~eiv~~l~~~~ 924 (2060)
T 2uva_G 884 I----IKKLNDDFQKVWFGRNSAGEPVDL--EDMTYAEVVHRMVELM 924 (2060)
T ss_dssp H----HHHHHHHSSSEETTBCTTSCBCCG--GGCBHHHHHHHHHHHH
T ss_pred H----HHhcCCchhhhhhheeecccccCC--CCCcHHHHHHHHHHHh
Confidence 0 000133433332 345666676 6899999999999886
|
| >2uv8_G Fatty acid synthase subunit beta (FAS1); fatty acid biosynthesis, malonyl/palmitoyl transferase, phosphopantetheine, transferase; HET: GVL FMN; 3.10A {Saccharomyces cerevisiae} PDB: 2vkz_G* 3hmj_G* | Back alignment and structure |
|---|
Probab=100.00 E-value=7.5e-40 Score=358.83 Aligned_cols=245 Identities=19% Similarity=0.227 Sum_probs=203.5
Q ss_pred cchhhcCCccceecCCCCCCCCcHHHHHHHHhCCCceeecCCCCCCHHHHHHHHHHHHhhcC--CcEEEEeecCCCC---
Q 020013 2 GWRGMLGFEYGIVQAPLGPDISGPELVAAVANAGGLGLLRAPDWEAPDYLRDLIRKTRSLTE--RPFGVGVVLAFPH--- 76 (332)
Q Consensus 2 ~~~~~l~~~~Pii~apM~~g~s~~~la~avs~aGglG~i~~~~~~~~e~~~~~i~~~r~~~~--~p~gvnl~~~~~~--- 76 (332)
.|+++|| +||||||||++++++++||+|||||||+|+|..+++.++|.+++.|+++|++++ +|||||+++..+.
T Consensus 582 ~~t~llg-~~PIi~~gM~~~~~~~~lvaAvsnAGglg~l~~~~~~~~e~l~~~I~~~~~~t~~~~~~gvN~~~~~~~~~~ 660 (2051)
T 2uv8_G 582 KFSKLIG-RPPLLVPGMTPCTVSPDFVAATTNAGYTIELAGGGYFSAAGMTAAIDSVVSQIEKGSTFGINLIYVNPFMLQ 660 (2051)
T ss_dssp HHHHHHS-SCSEEECCCHHHHTCHHHHHHHHHTTCEEEEEGGGCCSHHHHHHHHHHHHHHSCTTCCEEEEEETTCTTHHH
T ss_pred HHHHhhC-ccceecCCCccccccHHHHHHHHcCCcEEEEccCCCCCHHHHHHHHHHHHHhcCCCCceEEEEeecChhhhh
Confidence 3789999 699999999866679999999999999999965567899999999999999875 7999999887553
Q ss_pred --HHHHHHHHhcCCcE--EEEccCCCc-HHHHHHHHhCCCEEEEecCC----HHHHHHHHHcCCCE---EEEecCCCCcc
Q 020013 77 --NENIKAILSEKVAV--LQVSWGEYS-EELVLEAHSAGVKVVPQVGS----FDEARKAVNAGVDA---IIVQGREAGGH 144 (332)
Q Consensus 77 --~~~~~~~~~~~~~~--I~~~~g~~~-~~~i~~~~~~g~~v~~~v~s----~~~a~~a~~~g~D~---ivv~G~eaGGh 144 (332)
.+.++.++++|+++ |.+++|.|. +..++.+...|+++++.+.+ .++++.+.++|+|+ ++++|.|+|||
T Consensus 661 ~~~~~~~~~~~~gv~i~~v~~~ag~p~~~~~~~~i~~lG~~vi~~~~~~~~a~~~~~~~~~~g~d~~ii~~~~G~eaGGH 740 (2051)
T 2uv8_G 661 WGIPLIKELRSKGYPIQFLTIGAGVPSLEVASEYIETLGLKYLGLKPGSIDAISQVINIAKAHPNFPIALQWTGGRGGGH 740 (2051)
T ss_dssp HHHHHHHHHHHTTCSEEEEEEESSCCCHHHHHHHHHHSCCSCEEECCCSHHHHHHHHHHHHHSTTSCEEEEECCSSCSEE
T ss_pred hhHHHHHHHHHcCCCcceEEecCCCCchhhHHHHHHHcCCEEEEecCchHHHHHHHHHHHHhCCCceeEEEEEccCcCCC
Confidence 25678889999999 999888765 34445566669999986653 34456777889999 36689999999
Q ss_pred cCCC---CchhhhHHHHHHHhCCCCCcEEeecCcCCHHHHHHHH-----------HcCcceeeeccccccCccCCCCHHH
Q 020013 145 VIGQ---DGLISLLPMVVDLIGDRDIPIIAAGGIVDARGYVAAL-----------SLGAQGICLGTRFVASEESYAHPEY 210 (332)
Q Consensus 145 ~~~~---~~~~~ll~~i~~~~~~~~iPviaaGGI~~~~~v~~al-----------~~GA~gV~~GT~fl~t~Es~~~~~~ 210 (332)
.+.. ..++.++|++++.+ +||||++|||+|+++++++| ++|||||+||||||+|+||++|++|
T Consensus 741 ~g~~d~~~~~l~l~~~v~~~~---~ipviaaGGi~dg~~~~aaL~g~w~~~~g~~~lgadGv~~GTrf~~t~Ea~~~~~~ 817 (2051)
T 2uv8_G 741 HSFEDAHTPMLQMYSKIRRHP---NIMLIFGSGFGSADDTYPYLTGEWSTKFDYPPMPFDGFLFGSRVMIAKEVKTSPDA 817 (2051)
T ss_dssp CCSCCSSHHHHHHHHHHTTCT---TBCCEEESSCCSHHHHTHHHHTCGGGTTTCCCCCCSCEECSGGGTTSTTSCCCHHH
T ss_pred CCcccccccHHHHHHHHHhcC---CceEEEeCCCCCHHHHHHHHccccccccCccCCCCceeeechHHHhCcccccCHHH
Confidence 7322 34577899999987 89999999999999999999 8999999999999999999999999
Q ss_pred HHHHhcCCCceE-------------EEEecccCCCCCCceeecChHHHhhhcCCC
Q 020013 211 KRKLVEMDKTEY-------------TDVFGRARWPGAPHRVLQTPFFSNWKNIPA 252 (332)
Q Consensus 211 k~~~~~~~~t~~-------------t~~~~~~~~~g~~~R~l~n~~~~~~~~~~~ 252 (332)
||+|+++++++. ..... +-.|.|.|.|+|++++.|.+++.
T Consensus 818 K~~iv~a~~~d~~~w~~~~~~~~gG~~~~~--s~~g~~~r~l~~~~~~~~~~~~~ 870 (2051)
T 2uv8_G 818 KKCIAACTGVPDDKWEQTYKKPTGGIVTVR--SEMGEPIHKIATRGVMLWKEFDE 870 (2051)
T ss_dssp HHHHHTCCCCCGGGGGGGGTSCCSSEEEEE--CTTSCEEEEECCHHHHHHHHHHH
T ss_pred HHHHHhCCCCcccchhhccccCcCcEEEEe--ccCCCcHHHhccHHHHHHHHhHh
Confidence 999999876553 21111 11388999999999999987754
|
| >3zen_D Fatty acid synthase; transferase, mycolic acid biosynthesis, multifunctional ENZY substrate channeling; HET: FMN; 7.50A {Mycobacterium smegmatis} PDB: 4b3y_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.1e-35 Score=335.69 Aligned_cols=239 Identities=23% Similarity=0.288 Sum_probs=202.2
Q ss_pred cchhhcCCccceecCCCCCCCCcHHHHHHHHhCCCceeecCCCCCCHHHHHHHHHHHHhhc--CCcEEEEeecCCCCH--
Q 020013 2 GWRGMLGFEYGIVQAPLGPDISGPELVAAVANAGGLGLLRAPDWEAPDYLRDLIRKTRSLT--ERPFGVGVVLAFPHN-- 77 (332)
Q Consensus 2 ~~~~~l~~~~Pii~apM~~g~s~~~la~avs~aGglG~i~~~~~~~~e~~~~~i~~~r~~~--~~p~gvnl~~~~~~~-- 77 (332)
.|+++|| +|||||+||++++++++||+||||+||+|+|..+++.+++.+++.|+++|+++ ++||+||+++..+..
T Consensus 420 ~~~~~lg-~~PIi~a~M~~~~s~~~LaaAVs~AGglG~l~~~g~~~~~~l~~~i~~~r~~~~~~~p~~vNl~~~~p~~~~ 498 (3089)
T 3zen_D 420 KFTRLTG-RSPILLAGMTPTTVDAKIVAAAANAGHWAELAGGGQVTEQIFNDRIAELETLLEPGRAIQFNTLFLDPYLWK 498 (3089)
T ss_dssp HHHHHHS-SCSEEECCCHHHHTSHHHHHHHHHTTCEEEECSTTCCSHHHHHHHHHHHHHHSCTTCCCEEEEECSCHHHHH
T ss_pred hhhhhcC-CCCEEeCCCcCCcCCHHHHHHHHhCCCceeecCCCCCCHHHHHHHHHHHHHhcCCCCceeechhhcChhhhh
Confidence 3789999 99999999986678999999999999999997666779999999999999987 689999999876533
Q ss_pred ------HHHHHHHhcC--CcEEEEccCCCc----HHHHHHHHhCCCEEEE-ecCCHHHHHHHHHcCCC------EEEEec
Q 020013 78 ------ENIKAILSEK--VAVLQVSWGEYS----EELVLEAHSAGVKVVP-QVGSFDEARKAVNAGVD------AIIVQG 138 (332)
Q Consensus 78 ------~~~~~~~~~~--~~~I~~~~g~~~----~~~i~~~~~~g~~v~~-~v~s~~~a~~a~~~g~D------~ivv~G 138 (332)
+.++.+.+++ +|.|.+++|.|+ .++++.+++.|++++. .++++++++++.+.++| +|+++|
T Consensus 499 ~~~g~~~~~~~~~~~g~~vdgv~~~aG~P~~ee~~~~i~~l~~~Gi~~i~~~~~t~~~a~~~~~i~~d~~~~~y~vv~~G 578 (3089)
T 3zen_D 499 LQVGGKRLVQRARQSGAPIDGLVVSAGIPDLEEAVDIIDELNEVGISHVVFKPGTVEQIRSVIRIAAEVPTKPVIVHIEG 578 (3089)
T ss_dssp HHHHHHHHHHHHHHTTCSCCEEEEESSCCCHHHHHHHHTSTTHHHHCSEEECCCSHHHHHHHHHHHTTSTTSCEEEEECC
T ss_pred hccCHHHHHHHHHHcCCCceEEEEeCCCCchhHhHHHHHHHHHcCCEEEEEeCCCHHHHHHHHHhhhhcCCCcEEEEEeC
Confidence 6788899999 666888888765 5778888888999888 89999999999999988 999999
Q ss_pred CCCCcccCCCCchhhhHHHHHHHhCC-CCCcEEeecCcCCHHHHHHHH-----------HcCcceeeeccccccCccCCC
Q 020013 139 REAGGHVIGQDGLISLLPMVVDLIGD-RDIPIIAAGGIVDARGYVAAL-----------SLGAQGICLGTRFVASEESYA 206 (332)
Q Consensus 139 ~eaGGh~~~~~~~~~ll~~i~~~~~~-~~iPviaaGGI~~~~~v~~al-----------~~GA~gV~~GT~fl~t~Es~~ 206 (332)
.++|||. +...+..+++.....+.. .++|||++|||+|++++++++ .+|||||+|||+|+.|+||.+
T Consensus 579 ~eaGGH~-g~~~~~~ll~~~~~~ir~~~~iPViaaGGI~d~~~vaaal~g~ws~~~~~p~lGAdGV~vGTrfl~t~Ea~~ 657 (3089)
T 3zen_D 579 GRAGGHH-SWEDLDDLLLATYSELRSRSNITICVGGGIGTPERSAEYLSGRWAEVHGYPLMPIDGILVGTAAMATLEATT 657 (3089)
T ss_dssp SSSSEEC-CSCCHHHHHHHHHHHHTTCTTEEEEEESSCCCTTTTHHHHHTGGGGTTTCCCCCCSEEECSSTTTTCTTSCB
T ss_pred CCcCCCC-CcccHHHHHHHHHHHHhhcCCCeEEEEeCCCCHHHHHHHhccccccccCccCCCCCEEEecHHHHhCcccCC
Confidence 9999998 555677788444443321 379999999999999999999 999999999999999999999
Q ss_pred CHHHHHHHhcCCCce-----------EEEEecccCCCCCCceeecChHHH
Q 020013 207 HPEYKRKLVEMDKTE-----------YTDVFGRARWPGAPHRVLQTPFFS 245 (332)
Q Consensus 207 ~~~~k~~~~~~~~t~-----------~t~~~~~~~~~g~~~R~l~n~~~~ 245 (332)
++.||++|+++++++ +....+. .|.|.|.++|++++
T Consensus 658 s~~~K~~l~~a~~~~~~~~~g~~a~g~~~~~s~---~g~~~~~~~n~~~~ 704 (3089)
T 3zen_D 658 SPQVKQLLVETKGTEAWVGAGKAANGMASGRSQ---LGADIHEIDNAASR 704 (3089)
T ss_dssp CHHHHHHHHHCCCCSSCCCSSSCBTTEEEEECT---TSCEEEEETTTCCH
T ss_pred CHHHHHHHHhCCCcccccccCCccCCEEEeeec---cCCchHhhhhhhHH
Confidence 999999999987732 2333332 47889999886544
|
| >3ffs_A Inosine-5-monophosphate dehydrogenase; beta-alpha barrel, TIM fold, oxidoreductase; 3.19A {Cryptosporidium parvum} | Back alignment and structure |
|---|
Probab=99.98 E-value=3.7e-31 Score=251.67 Aligned_cols=202 Identities=19% Similarity=0.275 Sum_probs=158.0
Q ss_pred chhhcCCccceecCCCCCCCCcHHHHHHHHhCCCceeecCCCCCCHHHHHHHHHHHHhhcC----CcEE--EEeecC---
Q 020013 3 WRGMLGFEYGIVQAPLGPDISGPELVAAVANAGGLGLLRAPDWEAPDYLRDLIRKTRSLTE----RPFG--VGVVLA--- 73 (332)
Q Consensus 3 ~~~~l~~~~Pii~apM~~g~s~~~la~avs~aGglG~i~~~~~~~~e~~~~~i~~~r~~~~----~p~g--vnl~~~--- 73 (332)
|++.+++++||||+||. ++++++||+|||++||+|+|+. +.++|+++++++++|+.++ .||+ +||+..
T Consensus 35 lt~~l~l~~PIi~a~M~-~Vs~~~lA~Ava~aGGlGvi~~--~~~~e~~~~~i~~vk~~~~g~~~~P~~~~~nL~~~~~~ 111 (400)
T 3ffs_A 35 LTKNVSLKIPLISSAMD-TVTEHLMAVGMARLGGIGIIHK--NMDMESQVNEVLKVKNWISNLEKNESTPDQNLDKESTD 111 (400)
T ss_dssp SSSSCEESSSEEECSCT-TTCSSHHHHHHHTTTCEEEECS--SSCHHHHHHHHHHHHCCC--------------------
T ss_pred hhcccCCCCCEEeCCCC-CcCcHHHHHHHHHCCCEEEeCC--CCCHHHHHHHHHHHHhhccCcccCCCCccccccCCCCC
Confidence 66889999999999998 8999999999999999999985 5799999999999998775 6888 787510
Q ss_pred -------------------------------CCCHHHHHHHHhcCCcEEEE--ccCCCc--HHHHHHHHhC-CCEEEE-e
Q 020013 74 -------------------------------FPHNENIKAILSEKVAVLQV--SWGEYS--EELVLEAHSA-GVKVVP-Q 116 (332)
Q Consensus 74 -------------------------------~~~~~~~~~~~~~~~~~I~~--~~g~~~--~~~i~~~~~~-g~~v~~-~ 116 (332)
..+.+.++.+++.|+|+|.+ ++|.+. .+.++.+++. +++|+. .
T Consensus 112 ~~~~~~~~~~~~~p~~~~d~~g~l~v~~~v~~~~~e~~~~lveaGvdvIvldta~G~~~~~~e~I~~ik~~~~i~Vi~g~ 191 (400)
T 3ffs_A 112 GKDTKSNNNIDAYSNENLDNKGRLRVGAAIGVNEIERAKLLVEAGVDVIVLDSAHGHSLNIIRTLKEIKSKMNIDVIVGN 191 (400)
T ss_dssp -----------CCTTCCBCTTSSBCCEEEECCC-CHHHHHHHHHTCSEEEECCSCCSBHHHHHHHHHHHTTCCCEEEEEE
T ss_pred HHHHHHHHHhhhCcchhhccccceeEEeecCCCHHHHHHHHHHcCCCEEEEeCCCCCcccHHHHHHHHHhcCCCeEEEee
Confidence 00146788999999999987 556532 3566777775 899884 8
Q ss_pred cCCHHHHHHHHHcCCCEEEEecCCCCcccC-C------CCchhhhHHHHHHHhCCCCCcEEeecCcCCHHHHHHHHHcCc
Q 020013 117 VGSFDEARKAVNAGVDAIIVQGREAGGHVI-G------QDGLISLLPMVVDLIGDRDIPIIAAGGIVDARGYVAALSLGA 189 (332)
Q Consensus 117 v~s~~~a~~a~~~g~D~ivv~G~eaGGh~~-~------~~~~~~ll~~i~~~~~~~~iPviaaGGI~~~~~v~~al~~GA 189 (332)
+.+.++++.++++|+|+|++ |.+.| |.. . ..+.+.+++++.+.++..++|||++|||.+++++.+++++||
T Consensus 192 V~t~e~A~~a~~aGAD~I~v-G~g~G-s~~~tr~~~g~g~p~~~al~~v~~~~~~~~IPVIA~GGI~~~~di~kalalGA 269 (400)
T 3ffs_A 192 VVTEEATKELIENGADGIKV-GIGPG-SICTTRIVAGVGVPQITAIEKCSSVASKFGIPIIADGGIRYSGDIGKALAVGA 269 (400)
T ss_dssp ECSHHHHHHHHHTTCSEEEE-CC----------CCSCBCCCHHHHHHHHHHHHTTTTCCEEEESCCCSHHHHHHHHTTTC
T ss_pred cCCHHHHHHHHHcCCCEEEE-eCCCC-cCcccccccccchhHHHHHHHHHHHHHhcCCCEEecCCCCCHHHHHHHHHcCC
Confidence 99999999999999999999 76544 421 1 135678888888876444799999999999999999999999
Q ss_pred ceeeeccccccCccCCCCHH
Q 020013 190 QGICLGTRFVASEESYAHPE 209 (332)
Q Consensus 190 ~gV~~GT~fl~t~Es~~~~~ 209 (332)
++|+|||+|+.|+||+.+..
T Consensus 270 d~V~vGt~f~~t~Es~~~~~ 289 (400)
T 3ffs_A 270 SSVMIGSILAGTEESPGEKE 289 (400)
T ss_dssp SEEEECGGGTTBTTSSCCEE
T ss_pred CEEEEChHHhcCCCCCchhh
Confidence 99999999999999998743
|
| >4fo4_A Inosine 5'-monophosphate dehydrogenase; structural genomics, IMPDH, IMP, mycophenolic acid, MOA; HET: IMP MOA; 2.03A {Vibrio cholerae o1 biovar el tor} PDB: 4ff0_A* 4hlv_A* 4fez_A | Back alignment and structure |
|---|
Probab=99.96 E-value=8.3e-29 Score=233.57 Aligned_cols=203 Identities=24% Similarity=0.359 Sum_probs=163.5
Q ss_pred chhhcCCccceecCCCCCCCCcHHHHHHHHhCCCceeecCCCCCCHHHHHHHHHHHHhhcCCcEEEEeecCCCCHHHHHH
Q 020013 3 WRGMLGFEYGIVQAPLGPDISGPELVAAVANAGGLGLLRAPDWEAPDYLRDLIRKTRSLTERPFGVGVVLAFPHNENIKA 82 (332)
Q Consensus 3 ~~~~l~~~~Pii~apM~~g~s~~~la~avs~aGglG~i~~~~~~~~e~~~~~i~~~r~~~~~p~gvnl~~~~~~~~~~~~ 82 (332)
|++.+++++|||++||. ++++++|+.+++++||+|+|.. + .+++++.+.++++|+....++++++.......+.++.
T Consensus 39 lt~~~~l~~Pii~apM~-~vs~~~lA~avA~aGGlg~i~~-~-~s~e~~~~~i~~vk~~~~l~vga~vg~~~~~~~~~~~ 115 (366)
T 4fo4_A 39 LTKNIALNIPMVSASMD-TVTEARLAIALAQEGGIGFIHK-N-MSIEQQAAQVHQVKISGGLRVGAAVGAAPGNEERVKA 115 (366)
T ss_dssp EETTEEESSSEEECCCT-TTCSHHHHHHHHHTTCEEEECS-S-SCHHHHHHHHHHHHTTTSCCCEEECCSCTTCHHHHHH
T ss_pred cccccccCCCEEeCCCC-CCChHHHHHHHHHcCCceEeec-C-CCHHHHHHHHHHHHhcCceeEEEEeccChhHHHHHHH
Confidence 56788999999999998 7999999999999999999986 3 6899999999999976434444444333345788999
Q ss_pred HHhcCCcEEEE--ccCCCcHHH---HHHHHhC--CCEEEE-ecCCHHHHHHHHHcCCCEEEEecCCCCcccCC------C
Q 020013 83 ILSEKVAVLQV--SWGEYSEEL---VLEAHSA--GVKVVP-QVGSFDEARKAVNAGVDAIIVQGREAGGHVIG------Q 148 (332)
Q Consensus 83 ~~~~~~~~I~~--~~g~~~~~~---i~~~~~~--g~~v~~-~v~s~~~a~~a~~~g~D~ivv~G~eaGGh~~~------~ 148 (332)
++++++|+|++ +.|. +..+ ++.+++. +++++. .+.+.++++.++++|+|+|++ |.+.|+|... .
T Consensus 116 lieaGvd~I~idta~G~-~~~~~~~I~~ik~~~p~v~Vi~G~v~t~e~A~~a~~aGAD~I~v-G~gpGs~~~tr~~~g~g 193 (366)
T 4fo4_A 116 LVEAGVDVLLIDSSHGH-SEGVLQRIRETRAAYPHLEIIGGNVATAEGARALIEAGVSAVKV-GIGPGSICTTRIVTGVG 193 (366)
T ss_dssp HHHTTCSEEEEECSCTT-SHHHHHHHHHHHHHCTTCEEEEEEECSHHHHHHHHHHTCSEEEE-CSSCSTTBCHHHHHCCC
T ss_pred HHhCCCCEEEEeCCCCC-CHHHHHHHHHHHHhcCCCceEeeeeCCHHHHHHHHHcCCCEEEE-ecCCCCCCCcccccCcc
Confidence 99999999987 3343 4433 5566654 788764 699999999999999999999 7777776421 1
Q ss_pred CchhhhHHHHHHHhCCCCCcEEeecCcCCHHHHHHHHHcCcceeeeccccccCccCCCCHHH
Q 020013 149 DGLISLLPMVVDLIGDRDIPIIAAGGIVDARGYVAALSLGAQGICLGTRFVASEESYAHPEY 210 (332)
Q Consensus 149 ~~~~~ll~~i~~~~~~~~iPviaaGGI~~~~~v~~al~~GA~gV~~GT~fl~t~Es~~~~~~ 210 (332)
.+.+.+++++.+..+..++|||++|||.+++++.+++++|||+|+|||+|+.++||+.+..+
T Consensus 194 ~p~~~~l~~v~~~~~~~~iPVIA~GGI~~~~di~kala~GAd~V~vGs~f~~t~Esp~~~~~ 255 (366)
T 4fo4_A 194 VPQITAIADAAGVANEYGIPVIADGGIRFSGDISKAIAAGASCVMVGSMFAGTEEAPGEVIL 255 (366)
T ss_dssp CCHHHHHHHHHHHHGGGTCCEEEESCCCSHHHHHHHHHTTCSEEEESTTTTTBTTSSSCCEE
T ss_pred cchHHHHHHHHHHHhhcCCeEEEeCCCCCHHHHHHHHHcCCCEEEEChHhhcCCCCCchhhh
Confidence 35577788777654323799999999999999999999999999999999999999987544
|
| >3khj_A Inosine-5-monophosphate dehydrogenase; enzyme-inhibitor complex, oxidoreductase; HET: IMP C64; 2.80A {Cryptosporidium parvum} | Back alignment and structure |
|---|
Probab=99.95 E-value=1.7e-27 Score=224.91 Aligned_cols=198 Identities=20% Similarity=0.290 Sum_probs=163.1
Q ss_pred chhhcCCccceecCCCCCCCCcHHHHHHHHhCCCceeecCCCCCCHHHHHHHHHHHHhhcCCcEEEEeecCCCCHHHHHH
Q 020013 3 WRGMLGFEYGIVQAPLGPDISGPELVAAVANAGGLGLLRAPDWEAPDYLRDLIRKTRSLTERPFGVGVVLAFPHNENIKA 82 (332)
Q Consensus 3 ~~~~l~~~~Pii~apM~~g~s~~~la~avs~aGglG~i~~~~~~~~e~~~~~i~~~r~~~~~p~gvnl~~~~~~~~~~~~ 82 (332)
|++.+++++||+++||. ++++++|+.+++++||+|++.. ..+++...+.++++++.++.|+++|+..+. .+.++.
T Consensus 38 l~~~~~l~~Pii~apM~-~vt~~~lA~avA~~GGlgii~~--~~s~e~~~~~I~~vk~~~~~pvga~ig~~~--~e~a~~ 112 (361)
T 3khj_A 38 LTKNVSLKIPLISSAMD-TVTEHLMAVGMARLGGIGIIHK--NMDMESQVNEVLKVKNSGGLRVGAAIGVNE--IERAKL 112 (361)
T ss_dssp SSSSCEESSSEEECSST-TTCSHHHHHHHHHTTCEEEECS--SSCHHHHHHHHHHHHHTTCCCCEEEECTTC--HHHHHH
T ss_pred cccccccCCCEEeecCC-CCCcHHHHHHHHHcCCCeEEec--CCCHHHHHHHHHHHHhccCceEEEEeCCCH--HHHHHH
Confidence 55778899999999998 7999999999999999999985 468898899999999888899999998754 678899
Q ss_pred HHhcCCcEEEEc--cCCCcH---HHHHHHHhC-CCEEEE-ecCCHHHHHHHHHcCCCEEEEecCCCCcccCC------CC
Q 020013 83 ILSEKVAVLQVS--WGEYSE---ELVLEAHSA-GVKVVP-QVGSFDEARKAVNAGVDAIIVQGREAGGHVIG------QD 149 (332)
Q Consensus 83 ~~~~~~~~I~~~--~g~~~~---~~i~~~~~~-g~~v~~-~v~s~~~a~~a~~~g~D~ivv~G~eaGGh~~~------~~ 149 (332)
+++.++|+|+++ .|. +. +.++.+++. +++++. .+.+.++++.+.++|+|+|++ |.+.|++... ..
T Consensus 113 l~eaGad~I~ld~a~G~-~~~~~~~i~~i~~~~~~~Vivg~v~t~e~A~~l~~aGaD~I~V-G~~~Gs~~~tr~~~g~g~ 190 (361)
T 3khj_A 113 LVEAGVDVIVLDSAHGH-SLNIIRTLKEIKSKMNIDVIVGNVVTEEATKELIENGADGIKV-GIGPGSICTTRIVAGVGV 190 (361)
T ss_dssp HHHTTCSEEEECCSCCS-BHHHHHHHHHHHHHCCCEEEEEEECSHHHHHHHHHTTCSEEEE-CSSCCTTCCHHHHTCBCC
T ss_pred HHHcCcCeEEEeCCCCC-cHHHHHHHHHHHHhcCCcEEEccCCCHHHHHHHHHcCcCEEEE-ecCCCcCCCcccccCCCC
Confidence 999999999874 343 44 345555554 889885 899999999999999999999 6555554311 13
Q ss_pred chhhhHHHHHHHhCCCCCcEEeecCcCCHHHHHHHHHcCcceeeeccccccCccCCCC
Q 020013 150 GLISLLPMVVDLIGDRDIPIIAAGGIVDARGYVAALSLGAQGICLGTRFVASEESYAH 207 (332)
Q Consensus 150 ~~~~ll~~i~~~~~~~~iPviaaGGI~~~~~v~~al~~GA~gV~~GT~fl~t~Es~~~ 207 (332)
+.+..++++.+..+..++|||++|||.+++++.+++++|||+|++||+|+.++||+.+
T Consensus 191 p~~~~i~~v~~~~~~~~iPVIA~GGI~~~~di~kala~GAd~V~vGs~~~~t~Esp~~ 248 (361)
T 3khj_A 191 PQITAIEKCSSVASKFGIPIIADGGIRYSGDIGKALAVGASSVMIGSILAGTEESPGE 248 (361)
T ss_dssp CHHHHHHHHHHHHHHHTCCEEEESCCCSHHHHHHHHHHTCSEEEESTTTTTBTTSSCE
T ss_pred CcHHHHHHHHHHHhhcCCeEEEECCCCCHHHHHHHHHcCCCEEEEChhhhcCCcCCcc
Confidence 4566677765443212799999999999999999999999999999999999999875
|
| >1eep_A Inosine 5'-monophosphate dehydrogenase; alpha-beta barrel, TIM barrel, IMPDH, IMP dehydrogenase, LOO purine biosynthesis, oxidoreductase; 2.40A {Borrelia burgdorferi} SCOP: c.1.5.1 | Back alignment and structure |
|---|
Probab=99.94 E-value=4.9e-26 Score=218.90 Aligned_cols=269 Identities=17% Similarity=0.259 Sum_probs=180.5
Q ss_pred hhcCCccceecCCCCCCCCcHHHHHHHHhCCCceeecCCCCCCHHHHHHHHHHHHhhc----------------------
Q 020013 5 GMLGFEYGIVQAPLGPDISGPELVAAVANAGGLGLLRAPDWEAPDYLRDLIRKTRSLT---------------------- 62 (332)
Q Consensus 5 ~~l~~~~Pii~apM~~g~s~~~la~avs~aGglG~i~~~~~~~~e~~~~~i~~~r~~~---------------------- 62 (332)
+.+++++||+++||+ +.++++++.+++++|++|++.. ..+++++...+.+++..+
T Consensus 37 ~g~~l~~Pii~Apm~-~~~~~ela~a~a~aGglg~i~~--~~s~e~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~l~~~~ 113 (404)
T 1eep_A 37 KNISLNIPFLSSAMD-TVTESQMAIAIAKEGGIGIIHK--NMSIEAQRKEIEKVKTYKFQKTINTNGDTNEQKPEIFTAK 113 (404)
T ss_dssp SSCEESSSEEECCCT-TTCSHHHHHHHHHHTSEEEECS--SSCHHHHHHHHHHHHTCC----------------------
T ss_pred CCcccCCCEEeCCCC-CCCCHHHHHHHHHCCCEEEECC--CCCHHHHHHHHHHHHhhccCCCceeccccccccccccccC
Confidence 345689999999998 7999999999999999999984 468888777776655422
Q ss_pred ----------------CCc-----------EEEEeecCCCCHHHHHHHHhcCCcEEEE--ccCCC--cHHHHHHHHhC--
Q 020013 63 ----------------ERP-----------FGVGVVLAFPHNENIKAILSEKVAVLQV--SWGEY--SEELVLEAHSA-- 109 (332)
Q Consensus 63 ----------------~~p-----------~gvnl~~~~~~~~~~~~~~~~~~~~I~~--~~g~~--~~~~i~~~~~~-- 109 (332)
+.| +++|+.......+.++.+.+.++++|.+ ..|.+ ..+.++.+++.
T Consensus 114 ~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~i~~~~~~~~~a~~~~~~G~d~i~i~~~~g~~~~~~e~i~~ir~~~~ 193 (404)
T 1eep_A 114 QHLEKSDAYKNAEHKEDFPNACKDLNNKLRVGAAVSIDIDTIERVEELVKAHVDILVIDSAHGHSTRIIELIKKIKTKYP 193 (404)
T ss_dssp ----------------CCTTCCBCTTSCBCCEEEECSCTTHHHHHHHHHHTTCSEEEECCSCCSSHHHHHHHHHHHHHCT
T ss_pred CCCCHHHHHHHHHHhhhcchhhhhcccCceEEEEeCCChhHHHHHHHHHHCCCCEEEEeCCCCChHHHHHHHHHHHHHCC
Confidence 223 5778765433456677788899999997 34543 12455666765
Q ss_pred CCEEE-EecCCHHHHHHHHHcCCCEEEEecCCCCccc-----CC-CCchhhhHHHHHHHhCCCCCcEEeecCcCCHHHHH
Q 020013 110 GVKVV-PQVGSFDEARKAVNAGVDAIIVQGREAGGHV-----IG-QDGLISLLPMVVDLIGDRDIPIIAAGGIVDARGYV 182 (332)
Q Consensus 110 g~~v~-~~v~s~~~a~~a~~~g~D~ivv~G~eaGGh~-----~~-~~~~~~ll~~i~~~~~~~~iPviaaGGI~~~~~v~ 182 (332)
+++|+ ..+.+.++++.+.+.|+|+|++ |.+.|+|. .+ ..+.+..++.+.+.++..++|||++|||.+++++.
T Consensus 194 ~~pviv~~v~~~~~a~~a~~~Gad~I~v-g~~~G~~~~~~~~~~~g~p~~~~l~~v~~~~~~~~ipVia~GGI~~~~d~~ 272 (404)
T 1eep_A 194 NLDLIAGNIVTKEAALDLISVGADCLKV-GIGPGSICTTRIVAGVGVPQITAICDVYEACNNTNICIIADGGIRFSGDVV 272 (404)
T ss_dssp TCEEEEEEECSHHHHHHHHTTTCSEEEE-CSSCSTTSHHHHHHCCCCCHHHHHHHHHHHHTTSSCEEEEESCCCSHHHHH
T ss_pred CCeEEEcCCCcHHHHHHHHhcCCCEEEE-CCCCCcCcCccccCCCCcchHHHHHHHHHHHhhcCceEEEECCCCCHHHHH
Confidence 78988 4889999999999999999999 66555431 01 12345667777665433379999999999999999
Q ss_pred HHHHcCcceeeeccccccCccCCCCHHHHHHHhcCCCceEEEEecccCCCCCCceeecChHHHhhhcCCCCCccCCCccc
Q 020013 183 AALSLGAQGICLGTRFVASEESYAHPEYKRKLVEMDKTEYTDVFGRARWPGAPHRVLQTPFFSNWKNIPAHENEVNQPII 262 (332)
Q Consensus 183 ~al~~GA~gV~~GT~fl~t~Es~~~~~~k~~~~~~~~t~~t~~~~~~~~~g~~~R~l~n~~~~~~~~~~~~~~~~~~~~~ 262 (332)
+++++|||+|++||+|+.++||+.+..||+- .. ...+ .|.......
T Consensus 273 ~ala~GAd~V~iG~~~l~~~e~~~~~~~~~g------~~-~k~~-----~g~~~~g~~---------------------- 318 (404)
T 1eep_A 273 KAIAAGADSVMIGNLFAGTKESPSEEIIYNG------KK-FKSY-----VGMGSISAM---------------------- 318 (404)
T ss_dssp HHHHHTCSEEEECHHHHTBTTSSSCEEEETT------EE-EEC-------------------------------------
T ss_pred HHHHcCCCHHhhCHHHhcCCCCCcchhhhCC------eE-Eeec-----CCCCCHHHH----------------------
Confidence 9999999999999999999999998887751 11 1111 011000000
Q ss_pred ccccccchHHHHHHhhCCCCcccccCCc-cceeeeccccccccCCCCCHHHHHHHHHHHHHHHHH
Q 020013 263 GRSTIHGIEKKIHRLAGTVPNVTTTGDI-DSMVMFAGEGVGLIREILPAGEVVKQLVEGAQLLVH 326 (332)
Q Consensus 263 ~~~~~~~~~~~~~~~~~~~~~~~~~gd~-~~~~~~aG~~~~~i~~i~~~~~iv~~l~~e~~~~~~ 326 (332)
++. .. ..+.+||. +...+..++..+++..+.|++++++.|.+|.+..+.
T Consensus 319 --------~~g--~~-----~~~~~g~~~~~~~l~~~g~~~~v~~~~~v~~~~~~l~~el~~~m~ 368 (404)
T 1eep_A 319 --------KRG--SK-----SRYFQLENNEPKKLVPEGIEGMVPYSGKLKDILTQLKGGLMSGMG 368 (404)
T ss_dssp -----------------------------------------CEECCBCHHHHHHHHHHHHHHHHH
T ss_pred --------hhc--cc-----cchhcccccccccccCceeEEeccCCccHHHHHHHHHHHHHHHHH
Confidence 000 00 01122332 334456788888999999999999999999988753
|
| >2c6q_A GMP reductase 2; TIM barrel, metal-binding, NADP, oxidoreductase, potassium; HET: IMP NDP; 1.70A {Homo sapiens} PDB: 2bzn_A* 2a7r_A* 2ble_A* 2bwg_A* | Back alignment and structure |
|---|
Probab=99.92 E-value=5.2e-24 Score=200.51 Aligned_cols=199 Identities=16% Similarity=0.103 Sum_probs=146.2
Q ss_pred hhcCCccceecCCCCCCCCcHHHHHHHHhCCCceeecCCCCCCHHHHHHHHHHHHhhcCCcEEEEeecCCCCHHHHHHHH
Q 020013 5 GMLGFEYGIVQAPLGPDISGPELVAAVANAGGLGLLRAPDWEAPDYLRDLIRKTRSLTERPFGVGVVLAFPHNENIKAIL 84 (332)
Q Consensus 5 ~~l~~~~Pii~apM~~g~s~~~la~avs~aGglG~i~~~~~~~~e~~~~~i~~~r~~~~~p~gvnl~~~~~~~~~~~~~~ 84 (332)
+.+++++||+++||+ +.++++++.+++++|++|++.. + .+++.....+++-+... .++++++-......+.++.++
T Consensus 52 ~~~~l~~PIi~ApM~-~~~~~~lA~Ava~~Gglg~i~~-~-~s~e~~~~~i~~~p~~l-~~v~~~~g~~~~~~~~~~~l~ 127 (351)
T 2c6q_A 52 KQTYSGVPIIAANMD-TVGTFEMAKVLCKFSLFTAVHK-H-YSLVQWQEFAGQNPDCL-EHLAASSGTGSSDFEQLEQIL 127 (351)
T ss_dssp CCEEEECCEEECSST-TTSCHHHHHHHHHTTCEEECCT-T-CCHHHHHHHHHHCGGGC-TTEEEEECSSHHHHHHHHHHH
T ss_pred cCccccCCEEECCCC-CCCcHHHHHHHHHCCCEEEEcC-C-CCHHHHHHHHhhCchhh-heeEeecCCChHHHHHHHHHH
Confidence 467899999999998 6899999999999999999986 3 47776665554422211 346666543222234566667
Q ss_pred hc--CCcEEEEc--cCCCcH---HHHHHHHhC--CCEEE-EecCCHHHHHHHHHcCCCEEEEecCCCCcccCC------C
Q 020013 85 SE--KVAVLQVS--WGEYSE---ELVLEAHSA--GVKVV-PQVGSFDEARKAVNAGVDAIIVQGREAGGHVIG------Q 148 (332)
Q Consensus 85 ~~--~~~~I~~~--~g~~~~---~~i~~~~~~--g~~v~-~~v~s~~~a~~a~~~g~D~ivv~G~eaGGh~~~------~ 148 (332)
+. ++++++++ +|. +. +.++.+++. +++++ ..+.+.++|+.+.++|+|+|++.+ ..|++..+ .
T Consensus 128 ~~~~g~~~i~i~~~~g~-~~~~~~~i~~lr~~~~~~~vi~g~v~t~e~A~~a~~aGaD~I~v~~-g~G~~~~~r~~~g~~ 205 (351)
T 2c6q_A 128 EAIPQVKYICLDVANGY-SEHFVEFVKDVRKRFPQHTIMAGNVVTGEMVEELILSGADIIKVGI-GPGSVCTTRKKTGVG 205 (351)
T ss_dssp HHCTTCCEEEEECSCTT-BHHHHHHHHHHHHHCTTSEEEEEEECSHHHHHHHHHTTCSEEEECS-SCSTTBCHHHHHCBC
T ss_pred hccCCCCEEEEEecCCC-cHHHHHHHHHHHHhcCCCeEEEEeCCCHHHHHHHHHhCCCEEEECC-CCCcCcCccccCCCC
Confidence 76 89998775 353 44 356666664 67776 578999999999999999998842 22221101 1
Q ss_pred CchhhhHHHHHHHhCCCCCcEEeecCcCCHHHHHHHHHcCcceeeeccccccCccCCCCHH
Q 020013 149 DGLISLLPMVVDLIGDRDIPIIAAGGIVDARGYVAALSLGAQGICLGTRFVASEESYAHPE 209 (332)
Q Consensus 149 ~~~~~ll~~i~~~~~~~~iPviaaGGI~~~~~v~~al~~GA~gV~~GT~fl~t~Es~~~~~ 209 (332)
.+++..++++.+..+..++|||++|||.++.++.++|++||++|+|||+|+.++||+.+..
T Consensus 206 ~p~~~~l~~v~~~~~~~~ipvIa~GGI~~g~di~kAlalGA~~V~vG~~fl~~~Es~~~~~ 266 (351)
T 2c6q_A 206 YPQLSAVMECADAAHGLKGHIISDGGCSCPGDVAKAFGAGADFVMLGGMLAGHSESGGELI 266 (351)
T ss_dssp CCHHHHHHHHHHHHHHTTCEEEEESCCCSHHHHHHHHHTTCSEEEESTTTTTBTTSCSCEE
T ss_pred ccHHHHHHHHHHHHhhcCCcEEEeCCCCCHHHHHHHHHcCCCceeccHHHhcCccCcchhh
Confidence 3456667777665432369999999999999999999999999999999999999988653
|
| >3r2g_A Inosine 5'-monophosphate dehydrogenase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 1.94A {Legionella pneumophila subsp} | Back alignment and structure |
|---|
Probab=99.92 E-value=5.5e-24 Score=199.63 Aligned_cols=188 Identities=16% Similarity=0.223 Sum_probs=145.7
Q ss_pred CCccceecCCCCCCCCcHHHHHHHHhCCCceeecCCCCCCHHHHHHHHHHHHhhcCCcEEEEeecCCCCHHHHHHHHhcC
Q 020013 8 GFEYGIVQAPLGPDISGPELVAAVANAGGLGLLRAPDWEAPDYLRDLIRKTRSLTERPFGVGVVLAFPHNENIKAILSEK 87 (332)
Q Consensus 8 ~~~~Pii~apM~~g~s~~~la~avs~aGglG~i~~~~~~~~e~~~~~i~~~r~~~~~p~gvnl~~~~~~~~~~~~~~~~~ 87 (332)
.+++||+++||. +++++++|.+++++|++|+|.. +.++|++.+.+++.+ .++++++-.+....+.++.+.++|
T Consensus 40 ~l~~Pii~ApM~-~vte~~lA~A~a~~Gg~gvi~~--~~s~ee~~~~i~~~~----~~~~~~~g~~~~~~e~~~~a~~aG 112 (361)
T 3r2g_A 40 TLNLPVISANMD-TITESNMANFMHSKGAMGALHR--FMTIEENIQEFKKCK----GPVFVSVGCTENELQRAEALRDAG 112 (361)
T ss_dssp EESSCEEECCST-TTCSHHHHHHHHHTTCEEBCCS--CSCHHHHHHHHHTCC----SCCBEEECSSHHHHHHHHHHHHTT
T ss_pred EcCCCEEECCCC-CchHHHHHHHHHHcCCCEEEeC--CCCHHHHHHHHhhcc----eEEEEEcCCCHHHHHHHHHHHHcC
Confidence 378999999997 7999999999999999999985 368887776665443 345555544333356788889999
Q ss_pred CcEEEEc--cCCCc--HHHHHHHHhC--CCEEEE-ecCCHHHHHHHHHcCCCEEEEecCCCCcccC-----C-CCchhhh
Q 020013 88 VAVLQVS--WGEYS--EELVLEAHSA--GVKVVP-QVGSFDEARKAVNAGVDAIIVQGREAGGHVI-----G-QDGLISL 154 (332)
Q Consensus 88 ~~~I~~~--~g~~~--~~~i~~~~~~--g~~v~~-~v~s~~~a~~a~~~g~D~ivv~G~eaGGh~~-----~-~~~~~~l 154 (332)
+|+|.++ .|... .+.++.+++. +++|+. .+.++++++.++++|+|+|++ |...|.+.. + ..+.+..
T Consensus 113 vdvI~id~a~G~~~~~~e~I~~ir~~~~~~~Vi~G~V~T~e~A~~a~~aGaD~I~V-g~g~G~~~~tr~~~g~g~p~l~a 191 (361)
T 3r2g_A 113 ADFFCVDVAHAHAKYVGKTLKSLRQLLGSRCIMAGNVATYAGADYLASCGADIIKA-GIGGGSVCSTRIKTGFGVPMLTC 191 (361)
T ss_dssp CCEEEEECSCCSSHHHHHHHHHHHHHHTTCEEEEEEECSHHHHHHHHHTTCSEEEE-CCSSSSCHHHHHHHCCCCCHHHH
T ss_pred CCEEEEeCCCCCcHhHHHHHHHHHHhcCCCeEEEcCcCCHHHHHHHHHcCCCEEEE-cCCCCcCccccccCCccHHHHHH
Confidence 9999884 34321 2567777775 889998 699999999999999999999 444444321 1 1234556
Q ss_pred HHHHHHHhCCCCCcEEeecCcCCHHHHHHHHHcCcceeeeccccccCccCCCC
Q 020013 155 LPMVVDLIGDRDIPIIAAGGIVDARGYVAALSLGAQGICLGTRFVASEESYAH 207 (332)
Q Consensus 155 l~~i~~~~~~~~iPviaaGGI~~~~~v~~al~~GA~gV~~GT~fl~t~Es~~~ 207 (332)
++++++.. + |||++|||.+++++.++|++|||+|+|||+|+.++||+.+
T Consensus 192 I~~~~~~~---~-PVIAdGGI~~~~di~kALa~GAd~V~iGr~f~~t~Espg~ 240 (361)
T 3r2g_A 192 IQDCSRAD---R-SIVADGGIKTSGDIVKALAFGADFVMIGGMLAGSAPTPGE 240 (361)
T ss_dssp HHHHTTSS---S-EEEEESCCCSHHHHHHHHHTTCSEEEESGGGTTBTTSSSC
T ss_pred HHHHHHhC---C-CEEEECCCCCHHHHHHHHHcCCCEEEEChHHhCCccCCce
Confidence 66655433 3 9999999999999999999999999999999999999875
|
| >1ypf_A GMP reductase; GUAC, purines, pyrimidines, nucleosides, nucleotides, nucleo nucleoside interconversions, spine, structural genomics; 1.80A {Bacillus anthracis} PDB: 2a1y_A* | Back alignment and structure |
|---|
Probab=99.90 E-value=5e-23 Score=193.20 Aligned_cols=194 Identities=22% Similarity=0.255 Sum_probs=149.0
Q ss_pred CCccceecCCCCCCCCcHHHHHHHHhCCCceeecCCCCCCHHHHHHHHHHHHhhcCCcEEEEeecCCCCHHHHHHHHhcC
Q 020013 8 GFEYGIVQAPLGPDISGPELVAAVANAGGLGLLRAPDWEAPDYLRDLIRKTRSLTERPFGVGVVLAFPHNENIKAILSEK 87 (332)
Q Consensus 8 ~~~~Pii~apM~~g~s~~~la~avs~aGglG~i~~~~~~~~e~~~~~i~~~r~~~~~p~gvnl~~~~~~~~~~~~~~~~~ 87 (332)
.+++||+++||+ ++++++++.+++++|++|++... .++..++.++++++. +.|+++|+.......+.++.+.+.+
T Consensus 44 ~l~~Pi~~a~ma-g~s~~~la~a~~~~gg~g~~~~~---~~~~~~~~i~~~~~~-g~~v~v~~g~~~~~~~~a~~~~~~g 118 (336)
T 1ypf_A 44 KFKLPVVPANMQ-TIIDERIATYLAENNYFYIMHRF---QPEKRISFIRDMQSR-GLIASISVGVKEDEYEFVQQLAAEH 118 (336)
T ss_dssp EESSSEEECSST-TTCCHHHHHHHHHTTCCCCCCCS---SGGGHHHHHHHHHHT-TCCCEEEECCSHHHHHHHHHHHHTT
T ss_pred EecCcEEECCCC-CCChHHHHHHHHhCCCEEEecCC---CCHHHHHHHHHHHhc-CCeEEEeCCCCHHHHHHHHHHHhcC
Confidence 478999999998 79999999999999999998753 345566777777653 4588998533211234456677888
Q ss_pred --CcEEEEcc--CCCc--HHHHHHHHhC--CCEEEEe-cCCHHHHHHHHHcCCCEEEEecCCCCccc-------CCCCc-
Q 020013 88 --VAVLQVSW--GEYS--EELVLEAHSA--GVKVVPQ-VGSFDEARKAVNAGVDAIIVQGREAGGHV-------IGQDG- 150 (332)
Q Consensus 88 --~~~I~~~~--g~~~--~~~i~~~~~~--g~~v~~~-v~s~~~a~~a~~~g~D~ivv~G~eaGGh~-------~~~~~- 150 (332)
+++|.++. |.+. .+.++.+++. +++++.. +.++++|+.++++|+|+|++.+. ||.. +...+
T Consensus 119 ~~~~~i~i~~~~G~~~~~~~~i~~lr~~~~~~~vi~G~v~s~e~A~~a~~aGad~Ivvs~h--gG~~~~~~~~~~~g~~g 196 (336)
T 1ypf_A 119 LTPEYITIDIAHGHSNAVINMIQHIKKHLPESFVIAGNVGTPEAVRELENAGADATKVGIG--PGKVCITKIKTGFGTGG 196 (336)
T ss_dssp CCCSEEEEECSSCCSHHHHHHHHHHHHHCTTSEEEEEEECSHHHHHHHHHHTCSEEEECSS--CSTTCHHHHHHSCSSTT
T ss_pred CCCCEEEEECCCCCcHHHHHHHHHHHHhCCCCEEEECCcCCHHHHHHHHHcCCCEEEEecC--CCceeecccccCcCCch
Confidence 89988753 4322 2566777665 6778766 88999999999999999999543 2221 00112
Q ss_pred -hhhhHHHHHHHhCCCCCcEEeecCcCCHHHHHHHHHcCcceeeeccccccCccCCCCHHHH
Q 020013 151 -LISLLPMVVDLIGDRDIPIIAAGGIVDARGYVAALSLGAQGICLGTRFVASEESYAHPEYK 211 (332)
Q Consensus 151 -~~~ll~~i~~~~~~~~iPviaaGGI~~~~~v~~al~~GA~gV~~GT~fl~t~Es~~~~~~k 211 (332)
++.+++++++.+ ++|||++|||.+++|+.+++++|||+|++||+|+.|+||+.+..++
T Consensus 197 ~~~~~l~~v~~~~---~ipVIa~GGI~~g~Dv~kalalGAdaV~iGr~~l~t~Es~~~~~~~ 255 (336)
T 1ypf_A 197 WQLAALRWCAKAA---SKPIIADGGIRTNGDVAKSIRFGATMVMIGSLFAGHEESPGETIEK 255 (336)
T ss_dssp CHHHHHHHHHHTC---SSCEEEESCCCSTHHHHHHHHTTCSEEEESGGGTTCTTSSSCCC--
T ss_pred hHHHHHHHHHHHc---CCcEEEeCCCCCHHHHHHHHHcCCCEEEeChhhhccccCCCceeee
Confidence 688899999877 7999999999999999999999999999999999999999987776
|
| >4fxs_A Inosine-5'-monophosphate dehydrogenase; structural genomics, IMPDH, IMP, mycophenolic acid, MOA; HET: IMP MOA; 2.24A {Vibrio cholerae o1 biovar el tor} | Back alignment and structure |
|---|
Probab=99.84 E-value=2.1e-19 Score=176.55 Aligned_cols=202 Identities=22% Similarity=0.357 Sum_probs=149.9
Q ss_pred chhhcCCccceecCCCCCCCCcHHHHHHHHhCCCceeecCCCCCCHHHHHHHHHHHHhhcC-------------------
Q 020013 3 WRGMLGFEYGIVQAPLGPDISGPELVAAVANAGGLGLLRAPDWEAPDYLRDLIRKTRSLTE------------------- 63 (332)
Q Consensus 3 ~~~~l~~~~Pii~apM~~g~s~~~la~avs~aGglG~i~~~~~~~~e~~~~~i~~~r~~~~------------------- 63 (332)
+++.+++++||+++||. .++..+++.++++.||+|+|.. + .+++...+.+++++...+
T Consensus 36 lt~~i~l~iPivsa~Md-tVTe~~ma~a~a~~GGiGvI~~-n-~s~e~qa~~V~~Vk~~~~~m~~d~v~v~~~~tv~ea~ 112 (496)
T 4fxs_A 36 LTKNIALNIPMVSASMD-TVTEARLAIALAQEGGIGFIHK-N-MSIEQQAAQVHQVKIFEAGVVTHPVTVRPEQTIADVM 112 (496)
T ss_dssp EETTEEESSSEEECCCT-TTCSHHHHHHHHHHTCEEEECS-S-SCHHHHHHHHHHHHHCCC--CBCCCCBCSSSBHHHHH
T ss_pred eccccccCCCceecCcc-hhhHHHHHHHHHHcCCcceecC-C-CCHHHHHHHHHhccccccccccCceEECCCCCHHHHH
Confidence 67788999999999998 7999999999999999999975 3 577766666666643110
Q ss_pred ------------------CcEEE---------------------------------------------------------
Q 020013 64 ------------------RPFGV--------------------------------------------------------- 68 (332)
Q Consensus 64 ------------------~p~gv--------------------------------------------------------- 68 (332)
+++|+
T Consensus 113 ~~m~~~~~s~~PVvd~~~~lvGiVt~rDL~~~~~~~~~v~diM~p~~~~vtv~~~~~l~ea~~~m~~~~i~~lpVVDe~G 192 (496)
T 4fxs_A 113 ELTHYHGFAGFPVVTENNELVGIITGRDVRFVTDLTKSVAAVMTPKERLATVKEGATGAEVQEKMHKARVEKILVVNDEF 192 (496)
T ss_dssp HHHTSSCCCEEEEECSSSBEEEEEEHHHHTTCCCTTSBGGGTSEEGGGCCEEECC----CGGGTCC---CCCEEEECTTS
T ss_pred HHHHHcCCcEEEEEccCCEEEEEEEHHHHhhcccCCCcHHHHhcCCCCCEEECCCCCHHHHHHHHHHcCCCEEEEEcCCC
Confidence 01111
Q ss_pred ---Eee-----------------------------cCCCCHHHHHHHHhcCCcEEEEccCCC-cH---HHHHHHHhC--C
Q 020013 69 ---GVV-----------------------------LAFPHNENIKAILSEKVAVLQVSWGEY-SE---ELVLEAHSA--G 110 (332)
Q Consensus 69 ---nl~-----------------------------~~~~~~~~~~~~~~~~~~~I~~~~g~~-~~---~~i~~~~~~--g 110 (332)
+++ ......+.++.+.+.|+|+|.++.... +. +.++.+++. +
T Consensus 193 ~l~GiIT~~DIl~~~~~p~a~~d~~grL~v~aavG~~~d~~~~a~~l~~aG~d~I~id~a~g~~~~~~~~i~~ir~~~p~ 272 (496)
T 4fxs_A 193 QLKGMITAKDFHKAESKPNACKDEQGRLRVGAAVGAAPGNEERVKALVEAGVDVLLIDSSHGHSEGVLQRIRETRAAYPH 272 (496)
T ss_dssp BCCEEECCC-----CCCTTCCBCTTSCBCCEEECCSSSCCHHHHHHHHHTTCSEEEEECSCTTSHHHHHHHHHHHHHCTT
T ss_pred CEEEeehHhHHHHhhcccchhhhcccceeeeeeeccccchHHHHHHHHhccCceEEeccccccchHHHHHHHHHHHHCCC
Confidence 000 000114567778889999999864331 22 566666664 6
Q ss_pred CEEEE-ecCCHHHHHHHHHcCCCEEEEecCCCCcccCC------CCchhhhHHHHHHHhCCCCCcEEeecCcCCHHHHHH
Q 020013 111 VKVVP-QVGSFDEARKAVNAGVDAIIVQGREAGGHVIG------QDGLISLLPMVVDLIGDRDIPIIAAGGIVDARGYVA 183 (332)
Q Consensus 111 ~~v~~-~v~s~~~a~~a~~~g~D~ivv~G~eaGGh~~~------~~~~~~ll~~i~~~~~~~~iPviaaGGI~~~~~v~~ 183 (332)
++++. .+.+.++++.+.++|+|+|++.+. .|++... ..+.+.+++++.+.++..++|||++|||.+++++.+
T Consensus 273 ~~Vi~g~v~t~e~a~~l~~aGaD~I~Vg~g-~Gs~~~tr~~~g~g~p~~~~i~~v~~~~~~~~iPVIa~GGI~~~~di~k 351 (496)
T 4fxs_A 273 LEIIGGNVATAEGARALIEAGVSAVKVGIG-PGSICTTRIVTGVGVPQITAIADAAGVANEYGIPVIADGGIRFSGDISK 351 (496)
T ss_dssp CCEEEEEECSHHHHHHHHHHTCSEEEECSS-CCTTBCHHHHHCCCCCHHHHHHHHHHHHGGGTCCEEEESCCCSHHHHHH
T ss_pred ceEEEcccCcHHHHHHHHHhCCCEEEECCC-CCcCcccccccCCCccHHHHHHHHHHHhccCCCeEEEeCCCCCHHHHHH
Confidence 67654 689999999999999999998543 3444211 135678888888766434699999999999999999
Q ss_pred HHHcCcceeeeccccccCccCCCCH
Q 020013 184 ALSLGAQGICLGTRFVASEESYAHP 208 (332)
Q Consensus 184 al~~GA~gV~~GT~fl~t~Es~~~~ 208 (332)
++++|||+|++||+|+.|.||+...
T Consensus 352 ala~GAd~V~iGs~f~~t~Espg~~ 376 (496)
T 4fxs_A 352 AIAAGASCVMVGSMFAGTEEAPGEV 376 (496)
T ss_dssp HHHTTCSEEEESTTTTTBTTSSSCC
T ss_pred HHHcCCCeEEecHHHhcCCCCCcce
Confidence 9999999999999999999998764
|
| >3usb_A Inosine-5'-monophosphate dehydrogenase; structural genomics, center for structural genomics of infec diseases, csgid, TIM barrel, CBS-domain; HET: MSE IMP; 2.38A {Bacillus anthracis} PDB: 3tsd_A* 3tsb_A* | Back alignment and structure |
|---|
Probab=99.84 E-value=1.9e-19 Score=177.41 Aligned_cols=129 Identities=22% Similarity=0.332 Sum_probs=100.5
Q ss_pred HHHHHHHhcCCcEEEEccCC-CcH---HHHHHHHhC--CCEEE-EecCCHHHHHHHHHcCCCEEEEecCCCCcccCC---
Q 020013 78 ENIKAILSEKVAVLQVSWGE-YSE---ELVLEAHSA--GVKVV-PQVGSFDEARKAVNAGVDAIIVQGREAGGHVIG--- 147 (332)
Q Consensus 78 ~~~~~~~~~~~~~I~~~~g~-~~~---~~i~~~~~~--g~~v~-~~v~s~~~a~~a~~~g~D~ivv~G~eaGGh~~~--- 147 (332)
+.++.+.+.++++|.+.... .+. +.++.+++. +++++ ..+.+.++++.+.++|+|+|++ |...|++...
T Consensus 259 era~aLveaGvd~I~Id~a~g~~~~v~~~i~~i~~~~~~~~vi~g~v~t~e~a~~~~~aGad~i~v-g~g~gsi~~~~~~ 337 (511)
T 3usb_A 259 TRIDALVKASVDAIVLDTAHGHSQGVIDKVKEVRAKYPSLNIIAGNVATAEATKALIEAGANVVKV-GIGPGSICTTRVV 337 (511)
T ss_dssp HHHHHHHHTTCSEEEEECSCTTSHHHHHHHHHHHHHCTTSEEEEEEECSHHHHHHHHHHTCSEEEE-CSSCSTTCCHHHH
T ss_pred HHHHHHHhhccceEEecccccchhhhhhHHHHHHHhCCCceEEeeeeccHHHHHHHHHhCCCEEEE-CCCCccccccccc
Confidence 45666788999999885322 122 456666654 56666 4899999999999999999998 6666665311
Q ss_pred ---CCchhhhHHHHHHHhCCCCCcEEeecCcCCHHHHHHHHHcCcceeeeccccccCccCCCC
Q 020013 148 ---QDGLISLLPMVVDLIGDRDIPIIAAGGIVDARGYVAALSLGAQGICLGTRFVASEESYAH 207 (332)
Q Consensus 148 ---~~~~~~ll~~i~~~~~~~~iPviaaGGI~~~~~v~~al~~GA~gV~~GT~fl~t~Es~~~ 207 (332)
..+.+..++++.+..+..++|||++|||.+++++.+++++||++|++||+|+.+.||+..
T Consensus 338 ~g~g~p~~~~l~~v~~~~~~~~iPVIa~GGI~~~~di~kala~GA~~V~vGs~~~~~~es~g~ 400 (511)
T 3usb_A 338 AGVGVPQLTAVYDCATEARKHGIPVIADGGIKYSGDMVKALAAGAHVVMLGSMFAGVAESPGE 400 (511)
T ss_dssp HCCCCCHHHHHHHHHHHHHTTTCCEEEESCCCSHHHHHHHHHTTCSEEEESTTTTTBTTSSSC
T ss_pred cCCCCCcHHHHHHHHHHHHhCCCcEEEeCCCCCHHHHHHHHHhCchhheecHHHhcCccCchh
Confidence 135677777776665433699999999999999999999999999999999999999876
|
| >4avf_A Inosine-5'-monophosphate dehydrogenase; oxidoreductase; 2.23A {Pseudomonas aeruginosa} | Back alignment and structure |
|---|
Probab=99.83 E-value=1.8e-19 Score=176.90 Aligned_cols=131 Identities=27% Similarity=0.368 Sum_probs=102.7
Q ss_pred HHHHHHHHhcCCcEEEEccCC-CcH---HHHHHHHhC--CCEEEE-ecCCHHHHHHHHHcCCCEEEEecCCCCcccC---
Q 020013 77 NENIKAILSEKVAVLQVSWGE-YSE---ELVLEAHSA--GVKVVP-QVGSFDEARKAVNAGVDAIIVQGREAGGHVI--- 146 (332)
Q Consensus 77 ~~~~~~~~~~~~~~I~~~~g~-~~~---~~i~~~~~~--g~~v~~-~v~s~~~a~~a~~~g~D~ivv~G~eaGGh~~--- 146 (332)
.+.++.+.+.++|+|.++... .+. +.++.+++. +++++. .+.+.++++.+.++|+|+|++ |...|++..
T Consensus 231 ~~~a~~l~~aG~d~I~id~a~g~~~~~~~~v~~i~~~~p~~~Vi~g~v~t~e~a~~l~~aGaD~I~v-g~g~Gs~~~t~~ 309 (490)
T 4avf_A 231 GERVAALVAAGVDVVVVDTAHGHSKGVIERVRWVKQTFPDVQVIGGNIATAEAAKALAEAGADAVKV-GIGPGSICTTRI 309 (490)
T ss_dssp HHHHHHHHHTTCSEEEEECSCCSBHHHHHHHHHHHHHCTTSEEEEEEECSHHHHHHHHHTTCSEEEE-CSSCSTTCHHHH
T ss_pred HHHHHHHhhcccceEEecccCCcchhHHHHHHHHHHHCCCceEEEeeeCcHHHHHHHHHcCCCEEEE-CCCCCcCCCccc
Confidence 355677888899999885322 233 566667664 677765 599999999999999999998 444444321
Q ss_pred --C-CCchhhhHHHHHHHhCCCCCcEEeecCcCCHHHHHHHHHcCcceeeeccccccCccCCCCH
Q 020013 147 --G-QDGLISLLPMVVDLIGDRDIPIIAAGGIVDARGYVAALSLGAQGICLGTRFVASEESYAHP 208 (332)
Q Consensus 147 --~-~~~~~~ll~~i~~~~~~~~iPviaaGGI~~~~~v~~al~~GA~gV~~GT~fl~t~Es~~~~ 208 (332)
+ ..+.+.+++++.+.++..++|||++|||.+++++.+++++||++|++||+|+.+.||+...
T Consensus 310 ~~g~g~p~~~~l~~v~~~~~~~~iPVIa~GGI~~~~di~kal~~GAd~V~vGs~~~~~~Esp~~~ 374 (490)
T 4avf_A 310 VAGVGVPQISAIANVAAALEGTGVPLIADGGIRFSGDLAKAMVAGAYCVMMGSMFAGTEEAPGEI 374 (490)
T ss_dssp HTCBCCCHHHHHHHHHHHHTTTTCCEEEESCCCSHHHHHHHHHHTCSEEEECTTTTTBTTSSSCE
T ss_pred cCCCCccHHHHHHHHHHHhccCCCcEEEeCCCCCHHHHHHHHHcCCCeeeecHHHhcCCCCCCce
Confidence 1 1356888889888775457999999999999999999999999999999999999998764
|
| >2qr6_A IMP dehydrogenase/GMP reductase; NP_599840.1, G reductase domain, structural genomics, joint center for STR genomics, JCSG; HET: MSE; 1.50A {Corynebacterium glutamicum atcc 13032} | Back alignment and structure |
|---|
Probab=99.83 E-value=5.1e-19 Score=169.40 Aligned_cols=195 Identities=23% Similarity=0.316 Sum_probs=137.6
Q ss_pred CCccceecCCCCCCCCcHHHHHHHHhCCCceeecCC----CCCCHHHHHHHHHH--------------------------
Q 020013 8 GFEYGIVQAPLGPDISGPELVAAVANAGGLGLLRAP----DWEAPDYLRDLIRK-------------------------- 57 (332)
Q Consensus 8 ~~~~Pii~apM~~g~s~~~la~avs~aGglG~i~~~----~~~~~e~~~~~i~~-------------------------- 57 (332)
.+++||+++||+ ++++++++.+++++|++|++... ++..++...+.+.+
T Consensus 65 ~l~~Pii~Apm~-g~~~~~~a~a~a~~G~~gvl~~~~~~~~~~~~~~~~eeia~~~~~~d~~~g~~~~~q~~~~~~d~~~ 143 (393)
T 2qr6_A 65 KFDLPFMNHPSD-ALASPEFVIEMGKQGGLGVINAEGLWGRHADLDEAIAKVIAAYEEGDQAAATRTLQELHAAPLDTEL 143 (393)
T ss_dssp EESSSEEECCCT-TTCCHHHHHHHHHTTSBCEEETTSSTTTCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCCCHHH
T ss_pred ccCCCeEeCCCC-CcccHHHHHHHHHcCCcEEEEecceecccCCchhHHHHHHHHHHhcCCCccchhhhhcccccCCHHH
Confidence 378999999998 79999999999999999999762 12233332222222
Q ss_pred -------HHhhcCCcEEEEeecCCCCHHHHHHHHhcCCcEEEEcc-------CC---CcHHHHHHHHhCCCEEEE-ecCC
Q 020013 58 -------TRSLTERPFGVGVVLAFPHNENIKAILSEKVAVLQVSW-------GE---YSEELVLEAHSAGVKVVP-QVGS 119 (332)
Q Consensus 58 -------~r~~~~~p~gvnl~~~~~~~~~~~~~~~~~~~~I~~~~-------g~---~~~~~i~~~~~~g~~v~~-~v~s 119 (332)
+++. ..++.+++... ...+..+.+.+.+++++.++. .. ...++.+..+..+++++. .+.+
T Consensus 144 ~~~~i~~~~~~-g~~v~~~v~~~-~~~e~a~~~~~agad~i~i~~~~~~~~~~~~~~~~~~i~~l~~~~~~pvi~ggi~t 221 (393)
T 2qr6_A 144 LSERIAQVRDS-GEIVAVRVSPQ-NVREIAPIVIKAGADLLVIQGTLISAEHVNTGGEALNLKEFIGSLDVPVIAGGVND 221 (393)
T ss_dssp HHHHHHHHHHT-TSCCEEEECTT-THHHHHHHHHHTTCSEEEEECSSCCSSCCCC-----CHHHHHHHCSSCEEEECCCS
T ss_pred HHHHHHHHhhc-CCeEEEEeCCc-cHHHHHHHHHHCCCCEEEEeCCccccccCCCcccHHHHHHHHHhcCCCEEECCcCC
Confidence 2221 34555555432 123445566678999998762 11 112222333446787775 6889
Q ss_pred HHHHHHHHHcCCCEEEEecCCCCcccC----C-CCchhhhHHHHHHH-------hCCCCCcEEeecCcCCHHHHHHHHHc
Q 020013 120 FDEARKAVNAGVDAIIVQGREAGGHVI----G-QDGLISLLPMVVDL-------IGDRDIPIIAAGGIVDARGYVAALSL 187 (332)
Q Consensus 120 ~~~a~~a~~~g~D~ivv~G~eaGGh~~----~-~~~~~~ll~~i~~~-------~~~~~iPviaaGGI~~~~~v~~al~~ 187 (332)
+++++.+.+.|+|+|++ |. |||.+ + ..+++..++++++. +...++|||++|||.+++|+.+++++
T Consensus 222 ~e~a~~~~~~Gad~i~v-g~--Gg~~~~~~~~~g~~~~~~l~~v~~~~~~~~~~~~~~~ipvia~GGI~~~~dv~kalal 298 (393)
T 2qr6_A 222 YTTALHMMRTGAVGIIV-GG--GENTNSLALGMEVSMATAIADVAAARRDYLDETGGRYVHIIADGSIENSGDVVKAIAC 298 (393)
T ss_dssp HHHHHHHHTTTCSEEEE-SC--CSCCHHHHTSCCCCHHHHHHHHHHHHHHHHHHHTSCCCEEEECSSCCSHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCEEEE-CC--CcccccccCCCCCChHHHHHHHHHHHHHhHhhcCCcceEEEEECCCCCHHHHHHHHHc
Confidence 99999999999999999 54 55641 1 14667888888776 42112999999999999999999999
Q ss_pred CcceeeeccccccCccCCCCH
Q 020013 188 GAQGICLGTRFVASEESYAHP 208 (332)
Q Consensus 188 GA~gV~~GT~fl~t~Es~~~~ 208 (332)
|||+|++||+|+.+.||+.+.
T Consensus 299 GA~~V~iG~~~l~~~es~~~~ 319 (393)
T 2qr6_A 299 GADAVVLGSPLARAEEAAGKG 319 (393)
T ss_dssp TCSEEEECGGGGGSTTCTTTT
T ss_pred CCCEEEECHHHHcCCCCCCce
Confidence 999999999999999998864
|
| >1jcn_A Inosine monophosphate dehydrogenase I; IMPD, IMPDH, guanine nucleotide synthesis, oxidoreductase; HET: CPR; 2.50A {Homo sapiens} SCOP: c.1.5.1 d.37.1.1 PDB: 1jr1_A* 1nf7_A* 1b3o_A* 1nfb_A* | Back alignment and structure |
|---|
Probab=99.80 E-value=5e-18 Score=167.90 Aligned_cols=131 Identities=25% Similarity=0.359 Sum_probs=103.7
Q ss_pred HHHHHHHhcCCcEEEEc--cCCCc--HHHHHHHHhC--CCEEEE-ecCCHHHHHHHHHcCCCEEEEecCCCCcccC----
Q 020013 78 ENIKAILSEKVAVLQVS--WGEYS--EELVLEAHSA--GVKVVP-QVGSFDEARKAVNAGVDAIIVQGREAGGHVI---- 146 (332)
Q Consensus 78 ~~~~~~~~~~~~~I~~~--~g~~~--~~~i~~~~~~--g~~v~~-~v~s~~~a~~a~~~g~D~ivv~G~eaGGh~~---- 146 (332)
+.++.+.+.|+|+|.++ .|.+. .+.++.+++. +++|+. .+.+.++++.+.++|+|+|++ |.+.|||..
T Consensus 258 ~~a~~~~~aG~d~v~i~~~~G~~~~~~~~i~~i~~~~~~~pvi~~~v~t~~~a~~l~~aGad~I~v-g~~~G~~~~t~~~ 336 (514)
T 1jcn_A 258 YRLDLLTQAGVDVIVLDSSQGNSVYQIAMVHYIKQKYPHLQVIGGNVVTAAQAKNLIDAGVDGLRV-GMGCGSICITQEV 336 (514)
T ss_dssp HHHHHHHHTTCSEEEECCSCCCSHHHHHHHHHHHHHCTTCEEEEEEECSHHHHHHHHHHTCSEEEE-CSSCSCCBTTBCC
T ss_pred HHHHHHHHcCCCEEEeeccCCcchhHHHHHHHHHHhCCCCceEecccchHHHHHHHHHcCCCEEEE-CCCCCcccccccc
Confidence 34567788999999984 44431 3667888776 889885 699999999999999999999 777777731
Q ss_pred ---C--CCchhhhHHHHHHHhCCCCCcEEeecCcCCHHHHHHHHHcCcceeeeccccccCccCCCCHHHHH
Q 020013 147 ---G--QDGLISLLPMVVDLIGDRDIPIIAAGGIVDARGYVAALSLGAQGICLGTRFVASEESYAHPEYKR 212 (332)
Q Consensus 147 ---~--~~~~~~ll~~i~~~~~~~~iPviaaGGI~~~~~v~~al~~GA~gV~~GT~fl~t~Es~~~~~~k~ 212 (332)
+ ....+.+++++++.+ ++|||++|||.+++++.+++++|||+|+||++|+.++|++.+..||+
T Consensus 337 ~~~g~~~~~~~~~~~~~~~~~---~ipVia~GGI~~~~di~kala~GAd~V~iG~~~l~~~e~~~~~~~~~ 404 (514)
T 1jcn_A 337 MACGRPQGTAVYKVAEYARRF---GVPIIADGGIQTVGHVVKALALGASTVMMGSLLAATTEAPGEYFFSD 404 (514)
T ss_dssp CSCCCCHHHHHHHHHHHHGGG---TCCEEEESCCCSHHHHHHHHHTTCSEEEESTTTTTSTTSSCC-----
T ss_pred cCCCccchhHHHHHHHHHhhC---CCCEEEECCCCCHHHHHHHHHcCCCeeeECHHHHcCCcCCcceEeEC
Confidence 1 123466777777766 79999999999999999999999999999999999999999999986
|
| >1vrd_A Inosine-5'-monophosphate dehydrogenase; TM1347, structural G joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.18A {Thermotoga maritima} SCOP: c.1.5.1 | Back alignment and structure |
|---|
Probab=99.78 E-value=1.7e-18 Score=170.49 Aligned_cols=137 Identities=23% Similarity=0.326 Sum_probs=106.8
Q ss_pred HHHHHHHhcCCcEEEEc--cCCC--cHHHHHHHHhC--CCEEE-EecCCHHHHHHHHHcCCCEEEEecCCCCcccCC---
Q 020013 78 ENIKAILSEKVAVLQVS--WGEY--SEELVLEAHSA--GVKVV-PQVGSFDEARKAVNAGVDAIIVQGREAGGHVIG--- 147 (332)
Q Consensus 78 ~~~~~~~~~~~~~I~~~--~g~~--~~~~i~~~~~~--g~~v~-~~v~s~~~a~~a~~~g~D~ivv~G~eaGGh~~~--- 147 (332)
+.++.+++.|+++|.++ .|.+ ..+.++.+++. +++++ ..+.+.++++.+.++|+|+|++ +.++|+|...
T Consensus 240 ~~a~~l~~aGvd~v~i~~~~G~~~~~~e~i~~i~~~~p~~pvi~g~~~t~e~a~~l~~~G~d~I~v-~~~~G~~~~~~~~ 318 (494)
T 1vrd_A 240 ERVEKLVKAGVDVIVIDTAHGHSRRVIETLEMIKADYPDLPVVAGNVATPEGTEALIKAGADAVKV-GVGPGSICTTRVV 318 (494)
T ss_dssp HHHHHHHHTTCSEEEECCSCCSSHHHHHHHHHHHHHCTTSCEEEEEECSHHHHHHHHHTTCSEEEE-CSSCSTTCHHHHH
T ss_pred HHHHHHHHhCCCEEEEEecCCchHHHHHHHHHHHHHCCCceEEeCCcCCHHHHHHHHHcCCCEEEE-cCCCCcccccccc
Confidence 45667788899999874 3443 23566777665 67765 6688999999999999999999 5555554311
Q ss_pred ---CCchhhhHHHHHHHhCCCCCcEEeecCcCCHHHHHHHHHcCcceeeeccccccCccCCCCHHHHHHHh
Q 020013 148 ---QDGLISLLPMVVDLIGDRDIPIIAAGGIVDARGYVAALSLGAQGICLGTRFVASEESYAHPEYKRKLV 215 (332)
Q Consensus 148 ---~~~~~~ll~~i~~~~~~~~iPviaaGGI~~~~~v~~al~~GA~gV~~GT~fl~t~Es~~~~~~k~~~~ 215 (332)
..+.+..++.+.+..+..++|||++|||.++.++.+++++|||+|++|++|+.++||+.+..||+.+.
T Consensus 319 ~~~g~p~~~~l~~v~~~~~~~~ipvia~GGI~~~~di~kala~GAd~V~iGr~~l~~~e~~~~~~~~~~~~ 389 (494)
T 1vrd_A 319 AGVGVPQLTAVMECSEVARKYDVPIIADGGIRYSGDIVKALAAGAESVMVGSIFAGTEEAPGETILYQGRK 389 (494)
T ss_dssp HCCCCCHHHHHHHHHHHHHTTTCCEEEESCCCSHHHHHHHHHTTCSEEEESHHHHTBTTSSSEEEEETTEE
T ss_pred CCCCccHHHHHHHHHHHHhhcCCCEEEECCcCCHHHHHHHHHcCCCEEEECHHHhcCCcCCcceEEECCEE
Confidence 13456777777776433379999999999999999999999999999999999999999988876553
|
| >4af0_A Inosine-5'-monophosphate dehydrogenase; oxidoreductase, GTP biosynthesis, drug resistance; HET: MOA IMP; 2.20A {Cryptococcus neoformans} PDB: 4af0_B* | Back alignment and structure |
|---|
Probab=99.76 E-value=6.5e-17 Score=156.33 Aligned_cols=128 Identities=23% Similarity=0.339 Sum_probs=96.2
Q ss_pred HHHHHHHhcCCcEEEEc--cCCCcH---HHHHHHHhC--CCEEE-EecCCHHHHHHHHHcCCCEEEEecCCCCcccCC--
Q 020013 78 ENIKAILSEKVAVLQVS--WGEYSE---ELVLEAHSA--GVKVV-PQVGSFDEARKAVNAGVDAIIVQGREAGGHVIG-- 147 (332)
Q Consensus 78 ~~~~~~~~~~~~~I~~~--~g~~~~---~~i~~~~~~--g~~v~-~~v~s~~~a~~a~~~g~D~ivv~G~eaGGh~~~-- 147 (332)
+.++.+.++|+|+|.+. .|. .. +.++.+++. .+.|+ ..|.+.+.++.+.++|+|+|.| |...|.-+..
T Consensus 284 eR~~aLv~AGvD~iviD~ahGh-s~~v~~~i~~ik~~~p~~~viaGNVaT~e~a~~Li~aGAD~vkV-GiGpGSiCtTr~ 361 (556)
T 4af0_A 284 DRLKLLAEAGLDVVVLDSSQGN-SVYQIEFIKWIKQTYPKIDVIAGNVVTREQAAQLIAAGADGLRI-GMGSGSICITQE 361 (556)
T ss_dssp HHHHHHHHTTCCEEEECCSCCC-SHHHHHHHHHHHHHCTTSEEEEEEECSHHHHHHHHHHTCSEEEE-CSSCSTTBCCTT
T ss_pred HHHHHHHhcCCcEEEEeccccc-cHHHHHHHHHHHhhCCcceEEeccccCHHHHHHHHHcCCCEEee-cCCCCccccccc
Confidence 45677889999998873 243 34 445555554 56666 5789999999999999999988 4333332211
Q ss_pred ----CCchhhhHHHHHHHhCCCCCcEEeecCcCCHHHHHHHHHcCcceeeeccccccCccCCCC
Q 020013 148 ----QDGLISLLPMVVDLIGDRDIPIIAAGGIVDARGYVAALSLGAQGICLGTRFVASEESYAH 207 (332)
Q Consensus 148 ----~~~~~~ll~~i~~~~~~~~iPviaaGGI~~~~~v~~al~~GA~gV~~GT~fl~t~Es~~~ 207 (332)
..+.+..+.++.++....++|||+.|||.+..|+.+||++|||.|+||+.|..|.|||..
T Consensus 362 v~GvG~PQ~tAi~~~a~~a~~~~vpvIADGGI~~sGDi~KAlaaGAd~VMlGsllAGt~EsPGe 425 (556)
T 4af0_A 362 VMAVGRPQGTAVYAVAEFASRFGIPCIADGGIGNIGHIAKALALGASAVMMGGLLAGTTESPGE 425 (556)
T ss_dssp TCCSCCCHHHHHHHHHHHHGGGTCCEEEESCCCSHHHHHHHHHTTCSEEEESTTTTTBTTSSSC
T ss_pred ccCCCCcHHHHHHHHHHHHHHcCCCEEecCCcCcchHHHHHhhcCCCEEEEchhhccccCCCCc
Confidence 124456666666655444799999999999999999999999999999999999999863
|
| >3q58_A N-acetylmannosamine-6-phosphate 2-epimerase; TIM beta/alpha barrel, ribulose-phosphate binding barrel, carbohydrate metabolic process; HET: BTB; 1.80A {Salmonella enterica subsp} | Back alignment and structure |
|---|
Probab=99.75 E-value=5.1e-17 Score=144.04 Aligned_cols=163 Identities=15% Similarity=0.193 Sum_probs=128.3
Q ss_pred HHHHHHHHhCCCceeecCCCCCCHHHHHHHHHHHHhhcCCc-EEEEe-------ecCCCCHHHHHHHHhcCCcEEEEccC
Q 020013 25 PELVAAVANAGGLGLLRAPDWEAPDYLRDLIRKTRSLTERP-FGVGV-------VLAFPHNENIKAILSEKVAVLQVSWG 96 (332)
Q Consensus 25 ~~la~avs~aGglG~i~~~~~~~~e~~~~~i~~~r~~~~~p-~gvnl-------~~~~~~~~~~~~~~~~~~~~I~~~~g 96 (332)
.++|.++.++|+.|+... +++ .++++|+.++.| +|++- ++..++.+.++.+.+.|+|+|.+...
T Consensus 39 ~~~A~a~~~~Ga~~i~~~----~~~----~i~~ir~~v~~Pvig~~k~~~~~~~~~I~~~~~~i~~~~~aGad~I~l~~~ 110 (229)
T 3q58_A 39 AAMAQAAASAGAVAVRIE----GIE----NLRTVRPHLSVPIIGIIKRDLTGSPVRITPYLQDVDALAQAGADIIAFDAS 110 (229)
T ss_dssp HHHHHHHHHTTCSEEEEE----SHH----HHHHHGGGCCSCEEEECBCCCSSCCCCBSCSHHHHHHHHHHTCSEEEEECC
T ss_pred HHHHHHHHHCCCcEEEEC----CHH----HHHHHHHhcCCCEEEEEeecCCCCceEeCccHHHHHHHHHcCCCEEEECcc
Confidence 578888888898887542 344 478888888999 56653 22234456788889999999987532
Q ss_pred C-----CcHHHHHHHHhCCCEEEEecCCHHHHHHHHHcCCCEEEE--ecCCCCcccCCCCchhhhHHHHHHHhCCCCCcE
Q 020013 97 E-----YSEELVLEAHSAGVKVVPQVGSFDEARKAVNAGVDAIIV--QGREAGGHVIGQDGLISLLPMVVDLIGDRDIPI 169 (332)
Q Consensus 97 ~-----~~~~~i~~~~~~g~~v~~~v~s~~~a~~a~~~g~D~ivv--~G~eaGGh~~~~~~~~~ll~~i~~~~~~~~iPv 169 (332)
. ...++++.+++.|+.++..+++.++++.+++.|+|+|.+ .|++.+++. ....+.+++++++. ++||
T Consensus 111 ~~~~p~~l~~~i~~~~~~g~~v~~~v~t~eea~~a~~~Gad~Ig~~~~g~t~~~~~--~~~~~~li~~l~~~----~ipv 184 (229)
T 3q58_A 111 FRSRPVDIDSLLTRIRLHGLLAMADCSTVNEGISCHQKGIEFIGTTLSGYTGPITP--VEPDLAMVTQLSHA----GCRV 184 (229)
T ss_dssp SSCCSSCHHHHHHHHHHTTCEEEEECSSHHHHHHHHHTTCSEEECTTTTSSSSCCC--SSCCHHHHHHHHTT----TCCE
T ss_pred ccCChHHHHHHHHHHHHCCCEEEEecCCHHHHHHHHhCCCCEEEecCccCCCCCcC--CCCCHHHHHHHHHc----CCCE
Confidence 1 235788999999999999999999999999999999975 455444443 23457888888763 6999
Q ss_pred EeecCcCCHHHHHHHHHcCcceeeeccccccC
Q 020013 170 IAAGGIVDARGYVAALSLGAQGICLGTRFVAS 201 (332)
Q Consensus 170 iaaGGI~~~~~v~~al~~GA~gV~~GT~fl~t 201 (332)
|+.|||++++++.+++++||+||++||+|+.+
T Consensus 185 IA~GGI~t~~d~~~~~~~GadgV~VGsai~~p 216 (229)
T 3q58_A 185 IAEGRYNTPALAANAIEHGAWAVTVGSAITRI 216 (229)
T ss_dssp EEESSCCSHHHHHHHHHTTCSEEEECHHHHCH
T ss_pred EEECCCCCHHHHHHHHHcCCCEEEEchHhcCh
Confidence 99999999999999999999999999999853
|
| >3igs_A N-acetylmannosamine-6-phosphate 2-epimerase 2; energy metabolism, sugars, csgid, carbohydrate metabolism, isomerase; HET: MSE 16G; 1.50A {Salmonella enterica subsp} SCOP: c.1.2.0 | Back alignment and structure |
|---|
Probab=99.75 E-value=4.3e-17 Score=144.84 Aligned_cols=162 Identities=21% Similarity=0.272 Sum_probs=127.2
Q ss_pred HHHHHHHHhCCCceeecCCCCCCHHHHHHHHHHHHhhcCCc-EEEEe-------ecCCCCHHHHHHHHhcCCcEEEEccC
Q 020013 25 PELVAAVANAGGLGLLRAPDWEAPDYLRDLIRKTRSLTERP-FGVGV-------VLAFPHNENIKAILSEKVAVLQVSWG 96 (332)
Q Consensus 25 ~~la~avs~aGglG~i~~~~~~~~e~~~~~i~~~r~~~~~p-~gvnl-------~~~~~~~~~~~~~~~~~~~~I~~~~g 96 (332)
.++|.++.++|+.++... +++ .++++|+.++.| +|++- ++..++.+.++.+.+.|+|+|.+...
T Consensus 39 ~~~A~a~~~~Ga~~i~~~----~~~----~i~~ir~~v~~Pvig~~k~d~~~~~~~I~~~~~~i~~~~~~Gad~V~l~~~ 110 (232)
T 3igs_A 39 AAMALAAEQAGAVAVRIE----GID----NLRMTRSLVSVPIIGIIKRDLDESPVRITPFLDDVDALAQAGAAIIAVDGT 110 (232)
T ss_dssp HHHHHHHHHTTCSEEEEE----SHH----HHHHHHTTCCSCEEEECBCCCSSCCCCBSCSHHHHHHHHHHTCSEEEEECC
T ss_pred HHHHHHHHHCCCeEEEEC----CHH----HHHHHHHhcCCCEEEEEeecCCCcceEeCccHHHHHHHHHcCCCEEEECcc
Confidence 578888888898886542 343 478888888999 45442 12223456788889999999987532
Q ss_pred C-----CcHHHHHHHHhCCCEEEEecCCHHHHHHHHHcCCCEEEE--ecCCCCcccCCCCchhhhHHHHHHHhCCCCCcE
Q 020013 97 E-----YSEELVLEAHSAGVKVVPQVGSFDEARKAVNAGVDAIIV--QGREAGGHVIGQDGLISLLPMVVDLIGDRDIPI 169 (332)
Q Consensus 97 ~-----~~~~~i~~~~~~g~~v~~~v~s~~~a~~a~~~g~D~ivv--~G~eaGGh~~~~~~~~~ll~~i~~~~~~~~iPv 169 (332)
. ...++++.+++.|+.++..+++.++++.+++.|+|+|.+ .|++.+++. ....+.+++++++. ++||
T Consensus 111 ~~~~p~~l~~~i~~~~~~g~~v~~~v~t~eea~~a~~~Gad~Ig~~~~g~t~~~~~--~~~~~~~i~~l~~~----~ipv 184 (232)
T 3igs_A 111 ARQRPVAVEALLARIHHHHLLTMADCSSVDDGLACQRLGADIIGTTMSGYTTPDTP--EEPDLPLVKALHDA----GCRV 184 (232)
T ss_dssp SSCCSSCHHHHHHHHHHTTCEEEEECCSHHHHHHHHHTTCSEEECTTTTSSSSSCC--SSCCHHHHHHHHHT----TCCE
T ss_pred ccCCHHHHHHHHHHHHHCCCEEEEeCCCHHHHHHHHhCCCCEEEEcCccCCCCCCC--CCCCHHHHHHHHhc----CCcE
Confidence 1 235788999999999999999999999999999999975 455444442 23468888888774 6999
Q ss_pred EeecCcCCHHHHHHHHHcCcceeeecccccc
Q 020013 170 IAAGGIVDARGYVAALSLGAQGICLGTRFVA 200 (332)
Q Consensus 170 iaaGGI~~~~~v~~al~~GA~gV~~GT~fl~ 200 (332)
|+.|||++++++.+++++||+||++||+|+.
T Consensus 185 IA~GGI~t~~d~~~~~~~GadgV~VGsal~~ 215 (232)
T 3igs_A 185 IAEGRYNSPALAAEAIRYGAWAVTVGSAITR 215 (232)
T ss_dssp EEESCCCSHHHHHHHHHTTCSEEEECHHHHC
T ss_pred EEECCCCCHHHHHHHHHcCCCEEEEehHhcC
Confidence 9999999999999999999999999999985
|
| >2cu0_A Inosine-5'-monophosphate dehydrogenase; structural genomics, pyrococcus horikoshii OT3, riken structural genomics/PROT initiative, RSGI; HET: XMP; 2.10A {Pyrococcus horikoshii} SCOP: c.1.5.1 | Back alignment and structure |
|---|
Probab=99.73 E-value=1.9e-17 Score=162.57 Aligned_cols=197 Identities=20% Similarity=0.264 Sum_probs=115.3
Q ss_pred chhhcCCccceecCCCCCCCCcHHHHHHHHhCCCceeecCCCCCCHHHHHHHHHHHHhhcCCcEEEEeecCCCC---HHH
Q 020013 3 WRGMLGFEYGIVQAPLGPDISGPELVAAVANAGGLGLLRAPDWEAPDYLRDLIRKTRSLTERPFGVGVVLAFPH---NEN 79 (332)
Q Consensus 3 ~~~~l~~~~Pii~apM~~g~s~~~la~avs~aGglG~i~~~~~~~~e~~~~~i~~~r~~~~~p~gvnl~~~~~~---~~~ 79 (332)
+++.+++++||+++||. ++++++++.+++++|++|++.. + .++++.++.+.++++..+ ++..|++...++ .+.
T Consensus 40 lt~~l~l~~PIi~a~m~-~vt~~ela~ava~~GglG~i~~-~-~~~e~~~~~I~~v~~~~~-~m~~~~~~v~~~~tv~ea 115 (486)
T 2cu0_A 40 ITPNVKLNIPILSAAMD-TVTEWEMAVAMAREGGLGVIHR-N-MGIEEQVEQVKRVKRAER-LIVEDVITIAPDETVDFA 115 (486)
T ss_dssp EETTEEESSSEEECCCT-TTCSHHHHHHHHHTTCEEEECS-S-SCHHHHHHHHHHHHTCC--------------------
T ss_pred ecCCcccccceEEccce-eecHHHHHHHHHhcCCceeecC-C-CCHHHHHHHHHhhcchhh-ccccCceEECCCCCHHHH
Confidence 57889999999999998 7999999999999999999975 3 678888888888876533 344444432221 111
Q ss_pred HHHHHhcCC----------------------------------cEEEEccCCCcHHHHHHHHhC----------------
Q 020013 80 IKAILSEKV----------------------------------AVLQVSWGEYSEELVLEAHSA---------------- 109 (332)
Q Consensus 80 ~~~~~~~~~----------------------------------~~I~~~~g~~~~~~i~~~~~~---------------- 109 (332)
++.+.+.+. +.+.+....+..+..+.+++.
T Consensus 116 ~~~~~~~~~~~~pVvd~~~lvGivt~~Dl~~~~~~~v~~im~~~~~~v~~~~~l~eal~~m~~~~~~~lpVVde~g~lvG 195 (486)
T 2cu0_A 116 LFLMEKHGIDGLPVVEDEKVVGIITKKDIAAREGKLVKELMTKEVITVPESIEVEEALKIMIENRIDRLPVVDERGKLVG 195 (486)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHcCCcEEEEEECCEEEEEEEHHHhccCCCCCHHHHccCCCeEECCcCcHHHHHHHHHHcCCCEEEEEecCCeEEE
Confidence 111111110 011111000011111111111
Q ss_pred ---------------------CCEEE-EecC--CHHHHHHHHHcCCCEEEEecCCCCcccCCC-----------------
Q 020013 110 ---------------------GVKVV-PQVG--SFDEARKAVNAGVDAIIVQGREAGGHVIGQ----------------- 148 (332)
Q Consensus 110 ---------------------g~~v~-~~v~--s~~~a~~a~~~g~D~ivv~G~eaGGh~~~~----------------- 148 (332)
+..++ ..++ +.+.+....+.|+|.+++++ ++||..+.
T Consensus 196 iiT~~Dil~~~~~~~~~~~~~g~~~v~~~~~~~~~~~a~~l~~~gvd~lvvdt--a~G~~~~~L~~I~~l~~~~~vpvi~ 273 (486)
T 2cu0_A 196 LITMSDLVARKKYKNAVRDENGELLVAAAVSPFDIKRAIELDKAGVDVIVVDT--AHAHNLKAIKSMKEMRQKVDADFIV 273 (486)
T ss_dssp -----------CCTTCCBCTTSCBCCEEEECTTCHHHHHHHHHTTCSEEEEEC--SCCCCHHHHHHHHHHHHTCCSEEEE
T ss_pred EEEHHHHHHhhhccccccccCCceeecceechhhHHHHHHHHHhcCCceEEEe--cCCcEeehhhHHHHHHHHhCCcccc
Confidence 11111 1111 13566677788999988886 46663100
Q ss_pred ----------------------------------------CchhhhHHHHHHHhCCCCCcEEeecCcCCHHHHHHHHHcC
Q 020013 149 ----------------------------------------DGLISLLPMVVDLIGDRDIPIIAAGGIVDARGYVAALSLG 188 (332)
Q Consensus 149 ----------------------------------------~~~~~ll~~i~~~~~~~~iPviaaGGI~~~~~v~~al~~G 188 (332)
...+..++++.+.. ++|||++|||.++.|+.++|++|
T Consensus 274 k~v~~~~~a~~l~G~d~v~vg~g~g~~~~~r~~~~~g~~~~~~l~~~~~~~~~~---~vpVia~GGi~~~~di~kalalG 350 (486)
T 2cu0_A 274 GNIANPKAVDDLTFADAVKVGIGPGSICTTRIVAGVGVPQITAVAMVADRAQEY---GLYVIADGGIRYSGDIVKAIAAG 350 (486)
T ss_dssp EEECCHHHHTTCTTSSEEEECSSCSTTBCHHHHTCCCCCHHHHHHHHHHHHHHH---TCEEEEESCCCSHHHHHHHHHTT
T ss_pred CCcCCHHHHHHhhCCCeEEEeeeeccceeeeEEeecCcchHHHHHHHHHHHHHc---CCcEEecCCCCCHHHHHHHHHcC
Confidence 01122234455444 69999999999999999999999
Q ss_pred cceeeeccccccCccCCCCH
Q 020013 189 AQGICLGTRFVASEESYAHP 208 (332)
Q Consensus 189 A~gV~~GT~fl~t~Es~~~~ 208 (332)
||+|++||+|+.++||+.+.
T Consensus 351 A~~v~~g~~~~~~~e~~~~~ 370 (486)
T 2cu0_A 351 ADAVMLGNLLAGTKEAPGKE 370 (486)
T ss_dssp CSEEEESTTTTTBTTCCSCE
T ss_pred CCceeeChhhhcCccCchhh
Confidence 99999999999999999886
|
| >1zfj_A Inosine monophosphate dehydrogenase; IMPDH, CBS domains, oxidoreductase; HET: IMP; 1.90A {Streptococcus pyogenes} SCOP: c.1.5.1 d.37.1.1 | Back alignment and structure |
|---|
Probab=99.73 E-value=1.9e-16 Score=155.74 Aligned_cols=199 Identities=23% Similarity=0.356 Sum_probs=125.9
Q ss_pred chhhcCCccceecCCCCCCCCcHHHHHHHHhCCCceeecCCCCCCHHHHHHHHHHHHhhcCCcEEEEeecCCCC---HHH
Q 020013 3 WRGMLGFEYGIVQAPLGPDISGPELVAAVANAGGLGLLRAPDWEAPDYLRDLIRKTRSLTERPFGVGVVLAFPH---NEN 79 (332)
Q Consensus 3 ~~~~l~~~~Pii~apM~~g~s~~~la~avs~aGglG~i~~~~~~~~e~~~~~i~~~r~~~~~p~gvnl~~~~~~---~~~ 79 (332)
|++.|++++||+++||. ++++++++.+++++|++|+|.. +.++++.++.+++++...+ ++..|++...++ .+.
T Consensus 37 lt~~l~~~~Piv~a~M~-~vt~~eLa~av~~~Gg~G~i~~--~~~~e~~~~~i~~v~~~~~-im~~~~~~v~~~~tv~ea 112 (491)
T 1zfj_A 37 LADNLTLNIPIITAAMD-TVTGSKMAIAIARAGGLGVIHK--NMSITEQAEEVRKVKRSEN-GVIIDPFFLTPEHKVSEA 112 (491)
T ss_dssp EETTEEESSSEEECCCT-TTCSHHHHHHHHHTTCEEEECC--SSCHHHHHHHHHHHHHHTT-TTSSSCCCBCSSSBHHHH
T ss_pred hhhcceecCceEecCch-hccHHHHHHHHHHcCCceEEeC--CCCHHHHHHHHHHHhhHHh-cCcCCCeEECCCCcHHHH
Confidence 57889999999999998 7999999999999999999975 3688888888888766432 222222221111 222
Q ss_pred HHHHHhcCCcEEEE----------------------------------------ccCCCcHHHHHHHHhCCCEEEE----
Q 020013 80 IKAILSEKVAVLQV----------------------------------------SWGEYSEELVLEAHSAGVKVVP---- 115 (332)
Q Consensus 80 ~~~~~~~~~~~I~~----------------------------------------~~g~~~~~~i~~~~~~g~~v~~---- 115 (332)
++.+.+.+...+-+ +...+..+..+.+++.++..++
T Consensus 113 ~~~m~~~~~~~~pVvd~~~~~~lvGivt~~Dl~~~~~~~~~v~~im~~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVVd~ 192 (491)
T 1zfj_A 113 EELMQRYRISGVPIVETLANRKLVGIITNRDMRFISDYNAPISEHMTSEHLVTAAVGTDLETAERILHEHRIEKLPLVDN 192 (491)
T ss_dssp HHHHHHTTCSEEEEESCTTTCBEEEEEEHHHHHHCSCSSSBTTTSCCCSCCCCEETTCCHHHHHHHHHHTTCSEEEEECT
T ss_pred HHHHHHcCCCEEEEEEeCCCCEEEEEEEHHHHhhhccCCCcHHHHcCCCCCEEECCCCCHHHHHHHHHHcCCCEEEEEcC
Confidence 33333322221111 1011122333333333322111
Q ss_pred ----------------------------------ecC----CHHHHHHHHHcCCCEEEEecCCCCcccCC----------
Q 020013 116 ----------------------------------QVG----SFDEARKAVNAGVDAIIVQGREAGGHVIG---------- 147 (332)
Q Consensus 116 ----------------------------------~v~----s~~~a~~a~~~g~D~ivv~G~eaGGh~~~---------- 147 (332)
.++ +.++++.+.+.|+|.|++++. +||...
T Consensus 193 ~g~lvGivt~~Dil~~~~~~~~~~d~~~~~~vg~~i~~~~~~~~~a~~l~~~G~d~ivi~~a--~g~~~~~~~~i~~l~~ 270 (491)
T 1zfj_A 193 SGRLSGLITIKDIEKVIEFPHAAKDEFGRLLVAAAVGVTSDTFERAEALFEAGADAIVIDTA--HGHSAGVLRKIAEIRA 270 (491)
T ss_dssp TSBEEEEEEHHHHHHHHHCTTCCBCTTSCBCCEEEECSSTTHHHHHHHHHHHTCSEEEECCS--CTTCHHHHHHHHHHHH
T ss_pred CCcEEEEEEHHHHHHHHhccccccCcCCcEEEEEeccCchhHHHHHHHHHHcCCCeEEEeee--cCcchhHHHHHHHHHH
Confidence 111 257777788889998888763 445310
Q ss_pred -----------------------------------------------CCchhhhHHHHHHHhCCCCCcEEeecCcCCHHH
Q 020013 148 -----------------------------------------------QDGLISLLPMVVDLIGDRDIPIIAAGGIVDARG 180 (332)
Q Consensus 148 -----------------------------------------------~~~~~~ll~~i~~~~~~~~iPviaaGGI~~~~~ 180 (332)
..+.+..++++.......++|||++|||.++.|
T Consensus 271 ~~p~~pvi~G~v~t~~~a~~~~~~Gad~I~vg~g~g~~~~tr~~~~~~~p~~~~l~~~~~~~~~~~ipvia~GGi~~~~d 350 (491)
T 1zfj_A 271 HFPNRTLIAGNIATAEGARALYDAGVDVVKVGIGPGSICTTRVVAGVGVPQVTAIYDAAAVAREYGKTIIADGGIKYSGD 350 (491)
T ss_dssp HCSSSCEEEEEECSHHHHHHHHHTTCSEEEECSSCCTTBCHHHHTCCCCCHHHHHHHHHHHHHHTTCEEEEESCCCSHHH
T ss_pred HCCCCcEeCCCccCHHHHHHHHHcCCCEEEECccCCcceEEeeecCCCCCcHHHHHHHHHHHhhcCCCEEeeCCCCCHHH
Confidence 001122233333322112699999999999999
Q ss_pred HHHHHHcCcceeeeccccccCccCCCC
Q 020013 181 YVAALSLGAQGICLGTRFVASEESYAH 207 (332)
Q Consensus 181 v~~al~~GA~gV~~GT~fl~t~Es~~~ 207 (332)
+.+++++||++|++|++|+.++|++.+
T Consensus 351 i~kal~~GA~~v~vG~~~~~~~e~~~~ 377 (491)
T 1zfj_A 351 IVKALAAGGNAVMLGSMFAGTDEAPGE 377 (491)
T ss_dssp HHHHHHTTCSEEEESTTTTTBSSCCCC
T ss_pred HHHHHHcCCcceeeCHHhhCCCcCcce
Confidence 999999999999999999999998775
|
| >3b0p_A TRNA-dihydrouridine synthase; TIM barrel, oxidoreductase; HET: FMN; 1.70A {Thermus thermophilus} PDB: 3b0u_X* 3b0v_C* | Back alignment and structure |
|---|
Probab=99.72 E-value=1.4e-16 Score=150.07 Aligned_cols=191 Identities=14% Similarity=0.096 Sum_probs=137.3
Q ss_pred CccceecCCCCCCCCcHHHHHHHHhCCCceeecCCCCCCHHHHHH-HHHHHH--hhcCCcEEEEeecCCCC--HHHHHHH
Q 020013 9 FEYGIVQAPLGPDISGPELVAAVANAGGLGLLRAPDWEAPDYLRD-LIRKTR--SLTERPFGVGVVLAFPH--NENIKAI 83 (332)
Q Consensus 9 ~~~Pii~apM~~g~s~~~la~avs~aGglG~i~~~~~~~~e~~~~-~i~~~r--~~~~~p~gvnl~~~~~~--~~~~~~~ 83 (332)
+++||+++||. |+++..+...+.+.|++|++.++ +.+.+.+.. ..+++. ...+.|++++|+...+. .+..+.+
T Consensus 2 l~nriv~APM~-g~td~~~r~~~r~~Gg~gli~te-~~~~~~~~~~~~~~~~~~~~~~~p~~vQL~g~~p~~~~~aA~~a 79 (350)
T 3b0p_A 2 LDPRLSVAPMV-DRTDRHFRFLVRQVSLGVRLYTE-MTVDQAVLRGNRERLLAFRPEEHPIALQLAGSDPKSLAEAARIG 79 (350)
T ss_dssp CCCSEEECCCT-TTSSHHHHHHHHHHCSSSBEECC-CEEHHHHHHSCHHHHHCCCGGGCSEEEEEECSCHHHHHHHHHHH
T ss_pred CCCCEEECCCC-CCCHHHHHHHHHHcCCCCEEEeC-CEEechhhcCCHHHHhccCCCCCeEEEEeCCCCHHHHHHHHHHH
Confidence 57899999998 79999999999899999999875 455544311 001221 12468999999976541 2334455
Q ss_pred HhcCCcEEEEccCCCcHH-------------------HHHHHHh-CCCEEEEecC-----------CHHHHHHHHHcCCC
Q 020013 84 LSEKVAVLQVSWGEYSEE-------------------LVLEAHS-AGVKVVPQVG-----------SFDEARKAVNAGVD 132 (332)
Q Consensus 84 ~~~~~~~I~~~~g~~~~~-------------------~i~~~~~-~g~~v~~~v~-----------s~~~a~~a~~~g~D 132 (332)
.+.|+|.|.+++|+|... +++.+++ .+++|..++. ..+.++.+.+.|+|
T Consensus 80 ~~~G~D~IeIn~gcP~~~~~~d~~G~~l~~~~~~~~eiv~av~~~v~~PV~vKiR~g~~~~~~~~~~~~~a~~l~~aG~d 159 (350)
T 3b0p_A 80 EAFGYDEINLNLGCPSEKAQEGGYGACLLLDLARVREILKAMGEAVRVPVTVKMRLGLEGKETYRGLAQSVEAMAEAGVK 159 (350)
T ss_dssp HHTTCSEEEEEECCCSHHHHHTTCGGGGGGCHHHHHHHHHHHHHHCSSCEEEEEESCBTTCCCHHHHHHHHHHHHHTTCC
T ss_pred HHcCCCEEEECCcCCCCcCcCCCcchhHHhCHHHHHHHHHHHHHHhCCceEEEEecCcCccccHHHHHHHHHHHHHcCCC
Confidence 677999999998875422 3344444 4778776431 24556788899999
Q ss_pred EEEEecCCCC-cccCC-----CCchhhhHHHHHHHhCCCCCcEEeecCcCCHHHHHHHHHcCcceeeeccccccCccC
Q 020013 133 AIIVQGREAG-GHVIG-----QDGLISLLPMVVDLIGDRDIPIIAAGGIVDARGYVAALSLGAQGICLGTRFVASEES 204 (332)
Q Consensus 133 ~ivv~G~eaG-Gh~~~-----~~~~~~ll~~i~~~~~~~~iPviaaGGI~~~~~v~~al~~GA~gV~~GT~fl~t~Es 204 (332)
+|++.+.... |+.+. +...+.++.++++.++ ++|||+.|||.|++++.++++ |||+|++|++++..++-
T Consensus 160 ~I~V~~r~~~~g~~g~~~~~~~~~~~~~i~~ik~~~~--~iPVianGgI~s~eda~~~l~-GaD~V~iGRa~l~~P~l 234 (350)
T 3b0p_A 160 VFVVHARSALLALSTKANREIPPLRHDWVHRLKGDFP--QLTFVTNGGIRSLEEALFHLK-RVDGVMLGRAVYEDPFV 234 (350)
T ss_dssp EEEEECSCBC----------CCCCCHHHHHHHHHHCT--TSEEEEESSCCSHHHHHHHHT-TSSEEEECHHHHHCGGG
T ss_pred EEEEecCchhcccCcccccCCCcccHHHHHHHHHhCC--CCeEEEECCcCCHHHHHHHHh-CCCEEEECHHHHhCcHH
Confidence 9999886543 33311 1235788889888763 699999999999999999998 99999999999987764
|
| >1ofd_A Ferredoxin-dependent glutamate synthase 2; oxidoreductase, complex enzyme, substrate channeling, amidotransferase, flavoprotein, iron-sulphur; HET: FMN AKG; 2.00A {Synechocystis SP} SCOP: b.80.4.1 c.1.4.1 d.153.1.1 PDB: 1llz_A* 1lm1_A* 1llw_A* 1ofe_A* | Back alignment and structure |
|---|
Probab=99.70 E-value=2.9e-18 Score=182.44 Aligned_cols=198 Identities=16% Similarity=0.145 Sum_probs=138.9
Q ss_pred hcCCccceecCCCCCCCCcH----HHHHHHHhCCCceeecCCCCCCHHHHHH------------------------HHHH
Q 020013 6 MLGFEYGIVQAPLGPDISGP----ELVAAVANAGGLGLLRAPDWEAPDYLRD------------------------LIRK 57 (332)
Q Consensus 6 ~l~~~~Pii~apM~~g~s~~----~la~avs~aGglG~i~~~~~~~~e~~~~------------------------~i~~ 57 (332)
.++|.+||+++||++|..++ .|+.+++++|+++.++.+ ..+++.++. .+..
T Consensus 863 ~~~I~~Pfii~aMS~GslS~ea~~aLA~Aas~aGg~~~tGeG-g~~pe~~~~eir~~~~~~~~~~p~~~~~~nG~~~~~~ 941 (1520)
T 1ofd_A 863 VESIVKRFCTGGMSLGALSREAHETLAIAMNRLGAKSNSGEG-GEDVVRYLTLDDVDSEGNSPTLPHLHGLQNGDTANSA 941 (1520)
T ss_dssp HHHHHTTEECCCBCTTTSCHHHHHHHHHHHHHHTCBCEECTT-CCCGGGGSCCCCCCTTSCCTTSTTCCSCCTTCCCCCS
T ss_pred cccccCceEecCcCcccccHHHHHHHHHHHHHcCCceEeCCC-CCCHHHHHhhhccccccccccccccccccCcchHHHH
Confidence 35789999999999775444 899999999999999885 567776531 1234
Q ss_pred HHhhcCCcEEEEeecCC--------------C----------CHHHHHHHH--hcCCcEEEEccC-C--Cc---HHHHHH
Q 020013 58 TRSLTERPFGVGVVLAF--------------P----------HNENIKAIL--SEKVAVLQVSWG-E--YS---EELVLE 105 (332)
Q Consensus 58 ~r~~~~~p~gvnl~~~~--------------~----------~~~~~~~~~--~~~~~~I~~~~g-~--~~---~~~i~~ 105 (332)
++++++.|||||+.... + ..+.+..+. ..+++.+..... + .+ .++++.
T Consensus 942 I~Ql~sg~FGVn~~~l~~ad~IeIKi~QGAKpG~GG~Lp~~kV~~~iA~~R~~~~Gv~lisP~~~~d~~s~edl~~~I~~ 1021 (1520)
T 1ofd_A 942 IKQIASGRFGVTPEYLMSGKQLEIKMAQGAKPGEGGQLPGKKVSEYIAMLRRSKPGVTLISPPPHHDIYSIEDLAQLIYD 1021 (1520)
T ss_dssp EEEECTTCTTCCHHHHHHCSEEEEECCCTTSTTSCCEECGGGCCHHHHHHHTSCTTCCEECCSSCTTCSSHHHHHHHHHH
T ss_pred HHHhcCCCCccChhhccchHHHHHHHhccCCCCCCCCCCHHHHHHHHHHHcCCCCCCCeeCCCCCcCcCCHHHHHHHHHH
Confidence 55667788999854311 0 011222222 234555543210 0 12 256677
Q ss_pred HHhC--CCEEEEec----CCHHHHHHHHHcCCCEEEEecCCCCcccCC--------CCchhhhHHHHHHHhCC----CCC
Q 020013 106 AHSA--GVKVVPQV----GSFDEARKAVNAGVDAIIVQGREAGGHVIG--------QDGLISLLPMVVDLIGD----RDI 167 (332)
Q Consensus 106 ~~~~--g~~v~~~v----~s~~~a~~a~~~g~D~ivv~G~eaGGh~~~--------~~~~~~ll~~i~~~~~~----~~i 167 (332)
+++. +++|+.++ +...+|+.+.++|+|+|+++|.++|++. . ..++..+|+++.+.+.. .++
T Consensus 1022 Lk~~~~~~PV~VKlv~~~gi~~~A~~a~kAGAD~IvVsG~eGGTga-sp~~~~~~~GlPt~~aL~ev~~al~~~glr~~I 1100 (1520)
T 1ofd_A 1022 LHQINPEAQVSVKLVAEIGIGTIAAGVAKANADIIQISGHDGGTGA-SPLSSIKHAGSPWELGVTEVHRVLMENQLRDRV 1100 (1520)
T ss_dssp HHHHCTTSEEEEEEECSTTHHHHHHHHHHTTCSEEEEECTTCCCSS-EEHHHHHHBCCCHHHHHHHHHHHHHHTTCGGGC
T ss_pred HHHhCCCCCEEEEecCCCChHHHHHHHHHcCCCEEEEeCCCCccCC-CcchhhcCCchhHHHHHHHHHHHHHhcCCCCCc
Confidence 7765 56665543 3467888999999999999999855331 1 13567788888776521 269
Q ss_pred cEEeecCcCCHHHHHHHHHcCcceeeeccccccCccCC
Q 020013 168 PIIAAGGIVDARGYVAALSLGAQGICLGTRFVASEESY 205 (332)
Q Consensus 168 PviaaGGI~~~~~v~~al~~GA~gV~~GT~fl~t~Es~ 205 (332)
|||++|||.+++|+.+++++||++|++||+||.+.+|.
T Consensus 1101 pVIAdGGIrtG~DVakALaLGAdaV~iGTafL~algc~ 1138 (1520)
T 1ofd_A 1101 LLRADGGLKTGWDVVMAALMGAEEYGFGSIAMIAEGCI 1138 (1520)
T ss_dssp EEEEESSCCSHHHHHHHHHTTCSEEECSHHHHHHTTCC
T ss_pred eEEEECCCCCHHHHHHHHHcCCCeeEEcHHHHHHHHHH
Confidence 99999999999999999999999999999999988764
|
| >1ep3_A Dihydroorotate dehydrogenase B (PYRD subunit); heterotetramer, alpha-beta barrel, beta sandwich, FAD domain alpha/beta NADP domain; HET: FMN FAD; 2.10A {Lactococcus lactis} SCOP: c.1.4.1 PDB: 1ep2_A* 1ep1_A* | Back alignment and structure |
|---|
Probab=99.69 E-value=5.8e-17 Score=150.15 Aligned_cols=154 Identities=19% Similarity=0.210 Sum_probs=109.0
Q ss_pred CCHHHHHH-HHHHHHh-hcCCcEEEEeecCCCC--HHHHHHHHh-cCCcEEEEccCCC------------c---HHHHHH
Q 020013 46 EAPDYLRD-LIRKTRS-LTERPFGVGVVLAFPH--NENIKAILS-EKVAVLQVSWGEY------------S---EELVLE 105 (332)
Q Consensus 46 ~~~e~~~~-~i~~~r~-~~~~p~gvnl~~~~~~--~~~~~~~~~-~~~~~I~~~~g~~------------~---~~~i~~ 105 (332)
.+++.+.+ .++.+++ .++.|+++|+...... .+..+.+.+ .++|.|.++++++ + .++++.
T Consensus 79 ~~~~~~~~~~~~~~~~~~~~~p~~v~l~~~~~~~~~~~a~~~~~~~g~d~iei~~~~p~~~~g~~~~g~~~~~~~eii~~ 158 (311)
T 1ep3_A 79 PGLEVIMTEKLPWLNENFPELPIIANVAGSEEADYVAVCAKIGDAANVKAIELNISCPNVKHGGQAFGTDPEVAAALVKA 158 (311)
T ss_dssp CCHHHHHHTHHHHHHHHCTTSCEEEEECCSSHHHHHHHHHHHTTSTTEEEEEEECCSEEGGGTTEEGGGCHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHhcCCCCcEEEEEcCCCHHHHHHHHHHHhccCCCCEEEEeCCCCCCCCchhhhcCCHHHHHHHHHH
Confidence 45565533 4566766 4588999999876431 122333444 7899999887642 2 356677
Q ss_pred HHhC-CCEEEEec----CC-HHHHHHHHHcCCCEEEEecCCCCc-----------------ccCCCC---chhhhHHHHH
Q 020013 106 AHSA-GVKVVPQV----GS-FDEARKAVNAGVDAIIVQGREAGG-----------------HVIGQD---GLISLLPMVV 159 (332)
Q Consensus 106 ~~~~-g~~v~~~v----~s-~~~a~~a~~~g~D~ivv~G~eaGG-----------------h~~~~~---~~~~ll~~i~ 159 (332)
+++. +++++..+ .+ .+.++.+.+.|+|+|++.|.+.|. +. +.. ..+.++++++
T Consensus 159 v~~~~~~pv~vk~~~~~~~~~~~a~~l~~~G~d~i~v~~~~~g~~i~~~~~~~~~~~~~~g~~-g~~~~~~~~~~i~~i~ 237 (311)
T 1ep3_A 159 CKAVSKVPLYVKLSPNVTDIVPIAKAVEAAGADGLTMINTLMGVRFDLKTRQPILANITGGLS-GPAIKPVALKLIHQVA 237 (311)
T ss_dssp HHHHCSSCEEEEECSCSSCSHHHHHHHHHTTCSEEEECCCEEECCBCTTTCSBSSTTSCEEEE-SGGGHHHHHHHHHHHH
T ss_pred HHHhcCCCEEEEECCChHHHHHHHHHHHHcCCCEEEEeCCCcccccCcccCCccccCCCCccc-CccchHHHHHHHHHHH
Confidence 7765 88887644 34 344888999999999997754333 21 111 1246677777
Q ss_pred HHhCCCCCcEEeecCcCCHHHHHHHHHcCcceeeeccccccCcc
Q 020013 160 DLIGDRDIPIIAAGGIVDARGYVAALSLGAQGICLGTRFVASEE 203 (332)
Q Consensus 160 ~~~~~~~iPviaaGGI~~~~~v~~al~~GA~gV~~GT~fl~t~E 203 (332)
+.+ ++|||++|||.+++++.+++++|||+|++||+|+..++
T Consensus 238 ~~~---~ipvia~GGI~~~~d~~~~l~~GAd~V~vg~~~l~~p~ 278 (311)
T 1ep3_A 238 QDV---DIPIIGMGGVANAQDVLEMYMAGASAVAVGTANFADPF 278 (311)
T ss_dssp TTC---SSCEEECSSCCSHHHHHHHHHHTCSEEEECTHHHHCTT
T ss_pred Hhc---CCCEEEECCcCCHHHHHHHHHcCCCEEEECHHHHcCcH
Confidence 765 79999999999999999999999999999999998655
|
| >1me8_A Inosine-5'-monophosphate dehydrogenase; alpha beta barrel, oxidoreductase; HET: RVP; 1.90A {Tritrichomonas foetus} SCOP: c.1.5.1 PDB: 1ak5_A* 1me7_A* 1me9_A* 1meh_A* 1mei_A* 1mew_A* 1pvn_A* 1lrt_A* | Back alignment and structure |
|---|
Probab=99.68 E-value=1.1e-15 Score=150.53 Aligned_cols=129 Identities=29% Similarity=0.278 Sum_probs=99.6
Q ss_pred HHHHHHhcCCcEEEEcc--CCCcH---HHHHHHHhC--C-CEEE-EecCCHHHHHHHHHcCCCEEEEecCCCCcccCCC-
Q 020013 79 NIKAILSEKVAVLQVSW--GEYSE---ELVLEAHSA--G-VKVV-PQVGSFDEARKAVNAGVDAIIVQGREAGGHVIGQ- 148 (332)
Q Consensus 79 ~~~~~~~~~~~~I~~~~--g~~~~---~~i~~~~~~--g-~~v~-~~v~s~~~a~~a~~~g~D~ivv~G~eaGGh~~~~- 148 (332)
.++.+.+.+++++.++. |. +. +.++.+++. + ++++ ..+.+.+.++.+.++|+|+|++ |.++|+|....
T Consensus 246 ~~~~l~e~gv~~l~Vd~~~g~-~~~~~~~i~~lk~~~~~~~~Vi~G~V~t~~~a~~l~~aGad~I~V-g~~~g~~~~~r~ 323 (503)
T 1me8_A 246 RVPALVEAGADVLCIDSSDGF-SEWQKITIGWIREKYGDKVKVGAGNIVDGEGFRYLADAGADFIKI-GIGGGSICITRE 323 (503)
T ss_dssp HHHHHHHHTCSEEEECCSCCC-SHHHHHHHHHHHHHHGGGSCEEEEEECSHHHHHHHHHHTCSEEEE-CSSCSTTCCSTT
T ss_pred HHHHHHhhhccceEEecccCc-ccchhhHHHHHHHhCCCCceEeeccccCHHHHHHHHHhCCCeEEe-cccCCcCccccc
Confidence 35666777899887742 32 32 345556654 4 6655 6789999999999999999999 98888764221
Q ss_pred -----CchhhhHHHHHHHhCCC------CCcEEeecCcCCHHHHHHHHHcCcceeeeccccccCccCCCCHH
Q 020013 149 -----DGLISLLPMVVDLIGDR------DIPIIAAGGIVDARGYVAALSLGAQGICLGTRFVASEESYAHPE 209 (332)
Q Consensus 149 -----~~~~~ll~~i~~~~~~~------~iPviaaGGI~~~~~v~~al~~GA~gV~~GT~fl~t~Es~~~~~ 209 (332)
.+++..++++.+.+... ++|||++|||.++.++.++|++||++|+|||+|+.+.||+.+..
T Consensus 324 ~~~~g~p~~~~l~~v~~~~~~~~~~~~~~ipvia~GGi~~~~di~kAlalGA~~V~iG~~~~~~~E~~~~~~ 395 (503)
T 1me8_A 324 QKGIGRGQATAVIDVVAERNKYFEETGIYIPVCSDGGIVYDYHMTLALAMGADFIMLGRYFARFEESPTRKV 395 (503)
T ss_dssp TTCCCCCHHHHHHHHHHHHHHHHHHHSEECCEEEESCCCSHHHHHHHHHTTCSEEEESHHHHTBTTSSSCEE
T ss_pred ccCCCCchHHHHHHHHHHHHHHhhhcCCCceEEEeCCCCCHHHHHHHHHcCCCEEEECchhhccccCCCceE
Confidence 35677777777654321 59999999999999999999999999999999999999987653
|
| >2nli_A Lactate oxidase; flavoenzyme, FMN, D-lactate, oxidoreducta; HET: FMN; 1.59A {Aerococcus viridans} PDB: 2zfa_A* 2du2_A* 2e77_A* 2j6x_A* | Back alignment and structure |
|---|
Probab=99.68 E-value=1.3e-15 Score=144.11 Aligned_cols=189 Identities=17% Similarity=0.249 Sum_probs=133.3
Q ss_pred hhcC--CccceecCCCCC-CCC----cHHHHHHHHhCCCceeecCCCCCCHHHHHHHHHHHHhhcCCcEEEEeecCCCC-
Q 020013 5 GMLG--FEYGIVQAPLGP-DIS----GPELVAAVANAGGLGLLRAPDWEAPDYLRDLIRKTRSLTERPFGVGVVLAFPH- 76 (332)
Q Consensus 5 ~~l~--~~~Pii~apM~~-g~s----~~~la~avs~aGglG~i~~~~~~~~e~~~~~i~~~r~~~~~p~gvnl~~~~~~- 76 (332)
+++| ++.||+.+||+. +++ +..++.++.++|..-++......+.+++ .... .+.|+.++++.+...
T Consensus 73 ~i~G~~l~~Pi~iAPma~~g~~~~~~e~~la~aa~~~G~~~~~s~~~s~~le~v----~~~~--~~~~~~~QLy~~~d~~ 146 (368)
T 2nli_A 73 EILGHKIKAPFIMAPIAAHGLAHTTKEAGTARAVSEFGTIMSISAYSGATFEEI----SEGL--NGGPRWFQIYMAKDDQ 146 (368)
T ss_dssp EETTEEESSSEEECCCSCGGGTCTTHHHHHHHHHHHHTCCEEECTTCSSCHHHH----HHHH--TTCCEEEEECCBSSHH
T ss_pred EECCEecCCceeecchhhccCCCcHHHHHHHHHHHHcCCCEEeechHhHHHHHH----HHhC--CCCCEEEEEeccCCHH
Confidence 4555 568999999961 234 3578888888886666654321234432 2211 357888888774432
Q ss_pred --HHHHHHHHhcCCcEEEEccCCCc----------------------------------------------HHHHHHHHh
Q 020013 77 --NENIKAILSEKVAVLQVSWGEYS----------------------------------------------EELVLEAHS 108 (332)
Q Consensus 77 --~~~~~~~~~~~~~~I~~~~g~~~----------------------------------------------~~~i~~~~~ 108 (332)
.+.++.+.+.|++++.++.+.+. .+.++.+++
T Consensus 147 ~~~~~~~ra~~aG~~ai~it~d~p~~g~r~~d~~~~~~~p~~~~~~~~~~~~~~~g~~l~~~~~~~d~~~~~~~i~~lr~ 226 (368)
T 2nli_A 147 QNRDILDEAKSDGATAIILTADSTVSGNRDRDVKNKFVYPFGMPIVQRYLRGTAEGMSLNNIYGASKQKISPRDIEEIAG 226 (368)
T ss_dssp HHHHHHHHHHHTTCSCEEEESBCC---CBC--------CCSCCHHHHHHHTTSGGGC-----CTTBCSBCCHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCCEEEEcCCCCcccchhHHHhhcccCcchhhhhhcccccCCCCchHHhhhhccCchhhHHHHHHHHH
Confidence 34456666778888776654321 123455555
Q ss_pred -CCCEEEE-ecCCHHHHHHHHHcCCCEEEEecCCCCccc-CCCCchhhhHHHHHHHhCCCCCcEEeecCcCCHHHHHHHH
Q 020013 109 -AGVKVVP-QVGSFDEARKAVNAGVDAIIVQGREAGGHV-IGQDGLISLLPMVVDLIGDRDIPIIAAGGIVDARGYVAAL 185 (332)
Q Consensus 109 -~g~~v~~-~v~s~~~a~~a~~~g~D~ivv~G~eaGGh~-~~~~~~~~ll~~i~~~~~~~~iPviaaGGI~~~~~v~~al 185 (332)
.+++++. .+.++++++.+.++|+|+|++.|. ||+. +...+++..++++++.+.. ++|||++|||.+++|+.++|
T Consensus 227 ~~~~PvivK~v~~~e~a~~a~~~Gad~I~vs~~--ggr~~~~g~~~~~~l~~v~~~v~~-~ipVia~GGI~~g~D~~kal 303 (368)
T 2nli_A 227 HSGLPVFVKGIQHPEDADMAIKRGASGIWVSNH--GARQLYEAPGSFDTLPAIAERVNK-RVPIVFDSGVRRGEHVAKAL 303 (368)
T ss_dssp HSSSCEEEEEECSHHHHHHHHHTTCSEEEECCG--GGTSCSSCCCHHHHHHHHHHHHTT-SSCEEECSSCCSHHHHHHHH
T ss_pred HcCCCEEEEcCCCHHHHHHHHHcCCCEEEEcCC--CcCCCCCCCChHHHHHHHHHHhCC-CCeEEEECCCCCHHHHHHHH
Confidence 4666664 578999999999999999999876 4543 2234678999999988743 59999999999999999999
Q ss_pred HcCcceeeeccccccCc
Q 020013 186 SLGAQGICLGTRFVASE 202 (332)
Q Consensus 186 ~~GA~gV~~GT~fl~t~ 202 (332)
++|||+|++|+.|+...
T Consensus 304 alGAd~V~iGr~~l~~~ 320 (368)
T 2nli_A 304 ASGADVVALGRPVLFGL 320 (368)
T ss_dssp HTTCSEEEECHHHHHHH
T ss_pred HcCCCEEEECHHHHHHH
Confidence 99999999999998763
|
| >1p0k_A Isopentenyl-diphosphate delta-isomerase; terpene biosynthesis, dimethylallyl diphosphate, flavoprotein; 1.90A {Bacillus subtilis} SCOP: c.1.4.1 PDB: 1p0n_A* | Back alignment and structure |
|---|
Probab=99.67 E-value=1.5e-15 Score=143.05 Aligned_cols=193 Identities=19% Similarity=0.136 Sum_probs=131.4
Q ss_pred hhcC--CccceecCCCCCCCC-------cHHHHHHHHhCCCcee-ecCCC--CCCHHHHHHHHHHHHh-hcCCcEEEEee
Q 020013 5 GMLG--FEYGIVQAPLGPDIS-------GPELVAAVANAGGLGL-LRAPD--WEAPDYLRDLIRKTRS-LTERPFGVGVV 71 (332)
Q Consensus 5 ~~l~--~~~Pii~apM~~g~s-------~~~la~avs~aGglG~-i~~~~--~~~~e~~~~~i~~~r~-~~~~p~gvnl~ 71 (332)
+++| ++.|++.+||+ |.+ +..++.++.++| +++ ++... ...++. ....+.++. ..+.|+.+|+.
T Consensus 48 ~i~g~~~~~P~~iApm~-g~~~~~~~~~~~~~a~aa~~~G-~~~~~~~~~~~l~~~~~-~~~~~~~~~~~~~~pv~~~i~ 124 (349)
T 1p0k_A 48 KIGELSSSSPIFINAMT-GGGGKLTYEINKSLARAASQAG-IPLAVGSQMSALKDPSE-RLSYEIVRKENPNGLIFANLG 124 (349)
T ss_dssp EETTEEESCSEEEECCC-CSCHHHHHHHHHHHHHHHHHHT-CCEECCCCTTTTTCHHH-HHHHHHHHHHCSSSCEEEEEE
T ss_pred EECCcccCCceEEcCcc-ccchhhhhHHHHHHHHHHHHcC-CcEEeccchhcccCccc-ccceehhhhhCCCceeEEeec
Confidence 3455 56899999997 577 667888877776 333 32211 112221 223333332 24789999987
Q ss_pred cCCCCHHHHHHHHhcCCcEEEEccCCC--------------cHHHHHHHHh-CCCEEEEec----CCHHHHHHHHHcCCC
Q 020013 72 LAFPHNENIKAILSEKVAVLQVSWGEY--------------SEELVLEAHS-AGVKVVPQV----GSFDEARKAVNAGVD 132 (332)
Q Consensus 72 ~~~~~~~~~~~~~~~~~~~I~~~~g~~--------------~~~~i~~~~~-~g~~v~~~v----~s~~~a~~a~~~g~D 132 (332)
.....+...+.+...++|+|.++.+++ ..+.++.+++ .+++|+.+. .+.++++.+.+.|+|
T Consensus 125 ~~~~~~~~~~~~~~~gad~i~i~~~~~~~~~~~~~~~~~~~~~~~i~~vr~~~~~Pv~vK~~~~~~~~~~a~~a~~~Gad 204 (349)
T 1p0k_A 125 SEATAAQAKEAVEMIGANALQIHLNVIQEIVMPEGDRSFSGALKRIEQICSRVSVPVIVKEVGFGMSKASAGKLYEAGAA 204 (349)
T ss_dssp TTCCHHHHHHHHHHTTCSEEEEEECTTTTC--------CTTHHHHHHHHHHHCSSCEEEEEESSCCCHHHHHHHHHHTCS
T ss_pred CCCCHHHHHHHHHhcCCCeEEecccchhhhcCCCCCcchHHHHHHHHHHHHHcCCCEEEEecCCCCCHHHHHHHHHcCCC
Confidence 433323344445567899998876532 1245666664 478877653 689999999999999
Q ss_pred EEEEecCCCCcc-----------------cCCCCchhhhHHHHHHHhCCCCCcEEeecCcCCHHHHHHHHHcCcceeeec
Q 020013 133 AIIVQGREAGGH-----------------VIGQDGLISLLPMVVDLIGDRDIPIIAAGGIVDARGYVAALSLGAQGICLG 195 (332)
Q Consensus 133 ~ivv~G~eaGGh-----------------~~~~~~~~~ll~~i~~~~~~~~iPviaaGGI~~~~~v~~al~~GA~gV~~G 195 (332)
+|++.|. ||+ .....+++..++++++.+. ++|||+.|||.+++|+.+++++|||+|++|
T Consensus 205 ~I~v~~~--ggt~~~~~e~~r~~~~~~~~~~~g~~~~~~l~~v~~~~~--~ipvia~GGI~~~~d~~k~l~~GAd~V~iG 280 (349)
T 1p0k_A 205 AVDIGGY--GGTNFSKIENLRRQRQISFFNSWGISTAASLAEIRSEFP--ASTMIASGGLQDALDVAKAIALGASCTGMA 280 (349)
T ss_dssp EEEEEC-----------------CCGGGGTTCSCCHHHHHHHHHHHCT--TSEEEEESSCCSHHHHHHHHHTTCSEEEEC
T ss_pred EEEEcCC--CCcchhhHHHhhcccchhhhhccCccHHHHHHHHHHhcC--CCeEEEECCCCCHHHHHHHHHcCCCEEEEc
Confidence 9999875 331 1122356777888887652 799999999999999999999999999999
Q ss_pred cccccCccC
Q 020013 196 TRFVASEES 204 (332)
Q Consensus 196 T~fl~t~Es 204 (332)
|+|+...++
T Consensus 281 ~~~l~~~~~ 289 (349)
T 1p0k_A 281 GHFLKALTD 289 (349)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHhh
Confidence 999988654
|
| >1ea0_A Glutamate synthase [NADPH] large chain; oxidoreductase, iron sulphur flavoprotein; HET: OMT FMN AKG; 3.0A {Azospirillum brasilense} SCOP: b.80.4.1 c.1.4.1 d.153.1.1 PDB: 2vdc_A* | Back alignment and structure |
|---|
Probab=99.67 E-value=2e-17 Score=175.69 Aligned_cols=198 Identities=18% Similarity=0.199 Sum_probs=140.8
Q ss_pred cCCccceecCCCCCCCCcH----HHHHHHHhCCCceeecCCCCCCHHHHH------HHHHHHHhhcCCcEEEEeecCC--
Q 020013 7 LGFEYGIVQAPLGPDISGP----ELVAAVANAGGLGLLRAPDWEAPDYLR------DLIRKTRSLTERPFGVGVVLAF-- 74 (332)
Q Consensus 7 l~~~~Pii~apM~~g~s~~----~la~avs~aGglG~i~~~~~~~~e~~~------~~i~~~r~~~~~p~gvnl~~~~-- 74 (332)
.+|.+|++++||++|..++ .|+.+++++|+++.++.+ ..+++.++ ..+..+++.++.+||||+....
T Consensus 847 ~~I~~Pf~isaMS~GalS~ea~~aLA~Aa~~aGg~~~tGeG-g~~pe~~~~~~~g~~~~~~IrQ~asg~FGVn~~~l~~a 925 (1479)
T 1ea0_A 847 TAIRKRFITPGMSMGALSPEAHGTLNVAMNRIGAKSDSGEG-GEDPARFRPDKNGDNWNSAIKQVASGRFGVTAEYLNQC 925 (1479)
T ss_dssp HHHHTTEEEEECCBTTBCHHHHHHHHHHHHHTTCEEECCTT-CCCGGGSSBCTTSCBCCCSEEEECSSCTTCCHHHHTSC
T ss_pred ccccCCeEecCccccccCHHHHHHHHHHHHHcCCeeEcCCC-ccCHHHhhhccccchhhhhhhhhcCCCCCcChHHcccc
Confidence 3678999999999775554 899999999999999875 46776643 1334567777789999865421
Q ss_pred ------------C----------CHHHHHHHHh--cCCcEEEEccC-CC--c---HHHHHHHHhC--CCEEEEec----C
Q 020013 75 ------------P----------HNENIKAILS--EKVAVLQVSWG-EY--S---EELVLEAHSA--GVKVVPQV----G 118 (332)
Q Consensus 75 ------------~----------~~~~~~~~~~--~~~~~I~~~~g-~~--~---~~~i~~~~~~--g~~v~~~v----~ 118 (332)
+ ..+.+..+.. .+++.+...-. +. + .++++.+++. +++|+.++ +
T Consensus 926 ~~ieIKigQGAKpG~GG~Lp~~kv~~~IA~~R~~~~Gv~lisP~~~~d~~s~edl~~~I~~Lk~~~~~~PV~VKlv~~~g 1005 (1479)
T 1ea0_A 926 RELEIKVAQGAKPGEGGQLPGFKVTEMIARLRHSTPGVMLISPPPHHDIYSIEDLAQLIYDLKQINPDAKVTVKLVSRSG 1005 (1479)
T ss_dssp SEEEEECCCTTSTTTCCEECGGGCCHHHHHHHTCCTTCCEECCSSCTTCSSHHHHHHHHHHHHHHCTTCEEEEEEECCTT
T ss_pred chHHHHHhccCCCCcCCCCCHHHHHHHHHHHcCCCCCCCccCCCCCcCcCCHHHHHHHHHHHHHhCCCCCEEEEEcCCCC
Confidence 0 0122333322 34555543210 10 1 2456777765 66766543 3
Q ss_pred CHHHHHHHHHcCCCEEEEecCCCCcccC-------CCCchhhhHHHHHHHhCC----CCCcEEeecCcCCHHHHHHHHHc
Q 020013 119 SFDEARKAVNAGVDAIIVQGREAGGHVI-------GQDGLISLLPMVVDLIGD----RDIPIIAAGGIVDARGYVAALSL 187 (332)
Q Consensus 119 s~~~a~~a~~~g~D~ivv~G~eaGGh~~-------~~~~~~~ll~~i~~~~~~----~~iPviaaGGI~~~~~v~~al~~ 187 (332)
...+|+.+.++|+|+|+++|.++|++.. ...++...|+++.+.+.. .++|||++|||.+++|+.+++++
T Consensus 1006 i~~~A~~a~~AGAD~IvVsG~eGGTgasp~~~~~~~G~Pt~~aL~ev~~al~~~glr~~VpVIAdGGIrtG~DVakALaL 1085 (1479)
T 1ea0_A 1006 IGTIAAGVAKANADIILISGNSGGTGASPQTSIKFAGLPWEMGLSEVHQVLTLNRLRHRVRLRTDGGLKTGRDIVIAAML 1085 (1479)
T ss_dssp HHHHHHHHHHTTCSEEEEECTTCCCSSEETTHHHHSCCCHHHHHHHHHHHHHTTTCTTTSEEEEESSCCSHHHHHHHHHT
T ss_pred hHHHHHHHHHcCCcEEEEcCCCCCCCCCchhhhcCCchhHHHHHHHHHHHHHHcCCCCCceEEEECCCCCHHHHHHHHHc
Confidence 4678899999999999999998665421 013567788888887531 26999999999999999999999
Q ss_pred CcceeeeccccccCccCC
Q 020013 188 GAQGICLGTRFVASEESY 205 (332)
Q Consensus 188 GA~gV~~GT~fl~t~Es~ 205 (332)
||++|++||+||.+.+|.
T Consensus 1086 GAdaV~iGTafL~a~gc~ 1103 (1479)
T 1ea0_A 1086 GAEEFGIGTASLIAMGCI 1103 (1479)
T ss_dssp TCSEEECCHHHHHHHTCC
T ss_pred CCCeeeEcHHHHHHHHHH
Confidence 999999999999988764
|
| >3sr7_A Isopentenyl-diphosphate delta-isomerase; isopentenyl pyrophosphate isomerase, TIM-barrel; 2.04A {Streptococcus mutans} | Back alignment and structure |
|---|
Probab=99.66 E-value=5.1e-16 Score=146.12 Aligned_cols=192 Identities=18% Similarity=0.237 Sum_probs=118.5
Q ss_pred CccceecCCCCCCCC-----cHHHHHHHHhCCCceeecCCC--CCCHHHHHHHHHHHHhhcCCcEEEEeecCCCCHHHHH
Q 020013 9 FEYGIVQAPLGPDIS-----GPELVAAVANAGGLGLLRAPD--WEAPDYLRDLIRKTRSLTERPFGVGVVLAFPHNENIK 81 (332)
Q Consensus 9 ~~~Pii~apM~~g~s-----~~~la~avs~aGglG~i~~~~--~~~~e~~~~~i~~~r~~~~~p~gvnl~~~~~~~~~~~ 81 (332)
+++||+.+||+++.. +..++.+..++|..-.++... ...|+. ....-.|...+.++..|+-...+.++..+
T Consensus 85 l~~Pi~iapMtgg~~~~~~in~~lA~~a~~~G~~~~vGs~~~~le~~~~--~~~~v~r~~P~~~~ianig~~~~~e~~~~ 162 (365)
T 3sr7_A 85 FDFPFYINAMTGGSQKGKEVNEKLAQVADTCGLLFVTGSYSTALKNPDD--TSYQVKKSRPHLLLATNIGLDKPYQAGLQ 162 (365)
T ss_dssp ESSSEEEECC----CCCHHHHHHHHHHHHHHTCCEEC-------------------------CCEEEEEETTSCHHHHHH
T ss_pred ccCceEeccccCCCcchhHHHHHHHHHHHHcCCCeecccccccccCccc--cceEehhhCCCCcEEEEeCCCCCHHHHHH
Confidence 578999999985433 134777777777544443321 112332 11111222346777778766544344455
Q ss_pred HHHhcCCcEEEEccC----------CC-cH---HHHHHHHh-CCCEEEEe-c---CCHHHHHHHHHcCCCEEEEecCCCC
Q 020013 82 AILSEKVAVLQVSWG----------EY-SE---ELVLEAHS-AGVKVVPQ-V---GSFDEARKAVNAGVDAIIVQGREAG 142 (332)
Q Consensus 82 ~~~~~~~~~I~~~~g----------~~-~~---~~i~~~~~-~g~~v~~~-v---~s~~~a~~a~~~g~D~ivv~G~eaG 142 (332)
.+...++|++.+|.. +. .. +.++.+++ .+++|+.+ + .++++|+.+.++|+|+|++.|. |
T Consensus 163 ~ve~~~adal~ihln~~qe~~~p~Gd~~~~~~~~~I~~l~~~~~~PVivK~vg~g~s~e~A~~l~~aGad~I~V~g~--G 240 (365)
T 3sr7_A 163 AVRDLQPLFLQVHINLMQELLMPEGEREFRSWKKHLSDYAKKLQLPFILKEVGFGMDVKTIQTAIDLGVKTVDISGR--G 240 (365)
T ss_dssp HHHHHCCSCEEEEECHHHHHTSSSSCCCCHHHHHHHHHHHHHCCSCEEEEECSSCCCHHHHHHHHHHTCCEEECCCB--C
T ss_pred HHHhcCCCEEEEeccccccccCCCCCCcHHHHHHHHHHHHHhhCCCEEEEECCCCCCHHHHHHHHHcCCCEEEEeCC--C
Confidence 555678998877632 21 11 34555554 47888876 6 5899999999999999999887 5
Q ss_pred cccC----------------CCCchhhhHHHHHHHhCCCCCcEEeecCcCCHHHHHHHHHcCcceeeeccccccCccCCC
Q 020013 143 GHVI----------------GQDGLISLLPMVVDLIGDRDIPIIAAGGIVDARGYVAALSLGAQGICLGTRFVASEESYA 206 (332)
Q Consensus 143 Gh~~----------------~~~~~~~ll~~i~~~~~~~~iPviaaGGI~~~~~v~~al~~GA~gV~~GT~fl~t~Es~~ 206 (332)
|+.. ...++...++.+.. +. .++|||++|||.++.|+.++|++|||+|++||.|+.+..+..
T Consensus 241 Gt~~a~ie~~r~~~~~~~~~~g~pt~~~L~~v~~-~~-~~ipvia~GGI~~g~Dv~KaLalGAdaV~ig~~~l~a~~~~G 318 (365)
T 3sr7_A 241 GTSFAYIENRRGGNRSYLNQWGQTTAQVLLNAQP-LM-DKVEILASGGIRHPLDIIKALVLGAKAVGLSRTMLELVEQHS 318 (365)
T ss_dssp --------------CGGGTTCSCBHHHHHHHHGG-GT-TTSEEEECSSCCSHHHHHHHHHHTCSEEEESHHHHHHHHHSC
T ss_pred CcccchhhccccccccccccccccHHHHHHHHHH-hc-CCCeEEEeCCCCCHHHHHHHHHcCCCEEEECHHHHHHHHhcC
Confidence 5431 11344566666543 32 269999999999999999999999999999999998755433
|
| >1y0e_A Putative N-acetylmannosamine-6-phosphate 2-epimer; mannac-6-P epimerase, NANE, structural genomics, protein STR initiative, PSI; 1.95A {Staphylococcus aureus subsp} SCOP: c.1.2.5 | Back alignment and structure |
|---|
Probab=99.65 E-value=2.3e-15 Score=132.83 Aligned_cols=173 Identities=17% Similarity=0.291 Sum_probs=130.0
Q ss_pred cCCCCCCCCcHHHHHHHHhCCCceeecCCCCCCHHHHHHHHHHHHhhcCCcEEEE----------eecCCCCHHHHHHHH
Q 020013 15 QAPLGPDISGPELVAAVANAGGLGLLRAPDWEAPDYLRDLIRKTRSLTERPFGVG----------VVLAFPHNENIKAIL 84 (332)
Q Consensus 15 ~apM~~g~s~~~la~avs~aGglG~i~~~~~~~~e~~~~~i~~~r~~~~~p~gvn----------l~~~~~~~~~~~~~~ 84 (332)
..||....+.++++.++.++|+.++.. .+++ .++++++.++.|+ ++ +++. +..+.++.+.
T Consensus 16 ~~p~~~~~~~~~~a~~~~~~Ga~~i~~----~~~~----~i~~i~~~~~~pv-~~~~~~~~~~~~~~i~-~~~~~i~~~~ 85 (223)
T 1y0e_A 16 DEPLHSSFIMSKMALAAYEGGAVGIRA----NTKE----DILAIKETVDLPV-IGIVKRDYDHSDVFIT-ATSKEVDELI 85 (223)
T ss_dssp TSTTCCHHHHHHHHHHHHHHTCSEEEE----ESHH----HHHHHHHHCCSCE-EEECBCCCTTCCCCBS-CSHHHHHHHH
T ss_pred CCCCCCCccHHHHHHHHHHCCCeeecc----CCHH----HHHHHHHhcCCCE-EeeeccCCCccccccC-CcHHHHHHHH
Confidence 347864356778999999999877643 2444 3667777778888 33 2222 2356788889
Q ss_pred hcCCcEEEEccCC------CcHHHHHHHHhC--CCEEEEecCCHHHHHHHHHcCCCEEEEecCCCCcc-cCC--CCchhh
Q 020013 85 SEKVAVLQVSWGE------YSEELVLEAHSA--GVKVVPQVGSFDEARKAVNAGVDAIIVQGREAGGH-VIG--QDGLIS 153 (332)
Q Consensus 85 ~~~~~~I~~~~g~------~~~~~i~~~~~~--g~~v~~~v~s~~~a~~a~~~g~D~ivv~G~eaGGh-~~~--~~~~~~ 153 (332)
+.|++.|.++... ...++++.+++. +.+++..+.++++++.+.+.|+|+|.+......+. ... ....+.
T Consensus 86 ~~Gad~v~l~~~~~~~p~~~~~~~i~~~~~~~~~~~v~~~~~t~~e~~~~~~~G~d~i~~~~~g~t~~~~~~~~~~~~~~ 165 (223)
T 1y0e_A 86 ESQCEVIALDATLQQRPKETLDELVSYIRTHAPNVEIMADIATVEEAKNAARLGFDYIGTTLHGYTSYTQGQLLYQNDFQ 165 (223)
T ss_dssp HHTCSEEEEECSCSCCSSSCHHHHHHHHHHHCTTSEEEEECSSHHHHHHHHHTTCSEEECTTTTSSTTSTTCCTTHHHHH
T ss_pred hCCCCEEEEeeecccCcccCHHHHHHHHHHhCCCceEEecCCCHHHHHHHHHcCCCEEEeCCCcCcCCCCCCCCCcccHH
Confidence 9999999987532 125788888887 99999999999999999999999997633211111 111 223467
Q ss_pred hHHHHHHHhCCCCCcEEeecCcCCHHHHHHHHHcCcceeeecccccc
Q 020013 154 LLPMVVDLIGDRDIPIIAAGGIVDARGYVAALSLGAQGICLGTRFVA 200 (332)
Q Consensus 154 ll~~i~~~~~~~~iPviaaGGI~~~~~v~~al~~GA~gV~~GT~fl~ 200 (332)
+++++++.+ ++||++.|||.+++++.+++++|||+|++||+|+.
T Consensus 166 ~~~~~~~~~---~ipvia~GGI~~~~~~~~~~~~Gad~v~vG~al~~ 209 (223)
T 1y0e_A 166 FLKDVLQSV---DAKVIAEGNVITPDMYKRVMDLGVHCSVVGGAITR 209 (223)
T ss_dssp HHHHHHHHC---CSEEEEESSCCSHHHHHHHHHTTCSEEEECHHHHC
T ss_pred HHHHHHhhC---CCCEEEecCCCCHHHHHHHHHcCCCEEEEChHHcC
Confidence 888888876 79999999999999999999999999999999875
|
| >2yw3_A 4-hydroxy-2-oxoglutarate aldolase/2-deydro-3- deoxyphosphogluconate aldolase; structural genomics, NPPSFA; 1.67A {Thermus thermophilus} PDB: 2yw4_A | Back alignment and structure |
|---|
Probab=99.63 E-value=7.8e-15 Score=128.09 Aligned_cols=178 Identities=20% Similarity=0.235 Sum_probs=131.5
Q ss_pred CcchhhcCCccceecCCCCCCC---CcHHHHHHHHhCCCceeecCCCCCCHHHHHHHHHHHHhhcCCcEEEEeecCCCCH
Q 020013 1 MGWRGMLGFEYGIVQAPLGPDI---SGPELVAAVANAGGLGLLRAPDWEAPDYLRDLIRKTRSLTERPFGVGVVLAFPHN 77 (332)
Q Consensus 1 ~~~~~~l~~~~Pii~apM~~g~---s~~~la~avs~aGglG~i~~~~~~~~e~~~~~i~~~r~~~~~p~gvnl~~~~~~~ 77 (332)
|++.+.|. ++||+ |.-.+. ...+++.++ ..||+.++.. ++.+++. .+.++.+++ .+..++.+.++ ..
T Consensus 4 ~~~~~~l~-~~~ii--~vi~~~~~~~~~~~~~~l-~~gGv~~iel-~~k~~~~-~~~i~~~~~-~~~~~gag~vl---~~ 73 (207)
T 2yw3_A 4 MDPLAVLA-ESRLL--PLLTVRGGEDLLGLARVL-EEEGVGALEI-TLRTEKG-LEALKALRK-SGLLLGAGTVR---SP 73 (207)
T ss_dssp ---CHHHH-HHCEE--EEECCCSCCCHHHHHHHH-HHTTCCEEEE-ECSSTHH-HHHHHHHTT-SSCEEEEESCC---SH
T ss_pred chHHHHHH-hCCEE--EEEeCCCHHHHHHHHHHH-HHcCCCEEEE-eCCChHH-HHHHHHHhC-CCCEEEeCeEe---eH
Confidence 44445444 45665 321111 223444444 4578999987 4556655 467788887 67778888755 26
Q ss_pred HHHHHHHhcCCcEEEEccCCCcHHHHHHHHhCCCEEEEecCCHHHHHHHHHcCCCEEEEecCCCCcccCCCCchhhhHHH
Q 020013 78 ENIKAILSEKVAVLQVSWGEYSEELVLEAHSAGVKVVPQVGSFDEARKAVNAGVDAIIVQGREAGGHVIGQDGLISLLPM 157 (332)
Q Consensus 78 ~~~~~~~~~~~~~I~~~~g~~~~~~i~~~~~~g~~v~~~v~s~~~a~~a~~~g~D~ivv~G~eaGGh~~~~~~~~~ll~~ 157 (332)
+.++.+++.|+++++.+ + ...++++..+..|+++++.++|++++..+.+.|+|+|.+...+. ......++.
T Consensus 74 d~~~~A~~~GAd~v~~~-~-~d~~v~~~~~~~g~~~i~G~~t~~e~~~A~~~Gad~v~~fpa~~-------~gG~~~lk~ 144 (207)
T 2yw3_A 74 KEAEAALEAGAAFLVSP-G-LLEEVAALAQARGVPYLPGVLTPTEVERALALGLSALKFFPAEP-------FQGVRVLRA 144 (207)
T ss_dssp HHHHHHHHHTCSEEEES-S-CCHHHHHHHHHHTCCEEEEECSHHHHHHHHHTTCCEEEETTTTT-------TTHHHHHHH
T ss_pred HHHHHHHHcCCCEEEcC-C-CCHHHHHHHHHhCCCEEecCCCHHHHHHHHHCCCCEEEEecCcc-------ccCHHHHHH
Confidence 88999999999999887 3 35678888888999999889999999999999999999943211 112456777
Q ss_pred HHHHhCCCCCcEEeecCcCCHHHHHHHHHcCcceeeecccccc
Q 020013 158 VVDLIGDRDIPIIAAGGIVDARGYVAALSLGAQGICLGTRFVA 200 (332)
Q Consensus 158 i~~~~~~~~iPviaaGGI~~~~~v~~al~~GA~gV~~GT~fl~ 200 (332)
++..++ ++|+++.||| +.+|+.+++++||++|.+||+++.
T Consensus 145 l~~~~~--~ipvvaiGGI-~~~n~~~~l~aGa~~vavgSai~~ 184 (207)
T 2yw3_A 145 YAEVFP--EVRFLPTGGI-KEEHLPHYAALPNLLAVGGSWLLQ 184 (207)
T ss_dssp HHHHCT--TCEEEEBSSC-CGGGHHHHHTCSSBSCEEESGGGS
T ss_pred HHhhCC--CCcEEEeCCC-CHHHHHHHHhCCCcEEEEehhhhC
Confidence 777664 6999999999 789999999999999999999887
|
| >1yxy_A Putative N-acetylmannosamine-6-phosphate 2-epimer; structural genomics, epimerase, PSI, structure initiative; 1.60A {Streptococcus pyogenes} SCOP: c.1.2.5 | Back alignment and structure |
|---|
Probab=99.61 E-value=1.6e-14 Score=128.31 Aligned_cols=163 Identities=18% Similarity=0.316 Sum_probs=124.3
Q ss_pred cHHHHHHHHhCCCceeecCCCCCCHHHHHHHHHHHHhhcCCcE-EEE--------eecCCCCHHHHHHHHhcCCcEEEEc
Q 020013 24 GPELVAAVANAGGLGLLRAPDWEAPDYLRDLIRKTRSLTERPF-GVG--------VVLAFPHNENIKAILSEKVAVLQVS 94 (332)
Q Consensus 24 ~~~la~avs~aGglG~i~~~~~~~~e~~~~~i~~~r~~~~~p~-gvn--------l~~~~~~~~~~~~~~~~~~~~I~~~ 94 (332)
..+++.++.++|+.++.. .+++ .++.+|+.++.|+ +++ +++. +..+.++.+.+.|+++|.++
T Consensus 38 ~~~~a~~~~~~G~~~i~~----~~~~----~i~~i~~~~~~p~i~~~~~~~~~~~~~i~-~~~~~i~~~~~~Gad~V~l~ 108 (234)
T 1yxy_A 38 MPLMAKAAQEAGAVGIRA----NSVR----DIKEIQAITDLPIIGIIKKDYPPQEPFIT-ATMTEVDQLAALNIAVIAMD 108 (234)
T ss_dssp HHHHHHHHHHHTCSEEEE----ESHH----HHHHHHTTCCSCEEEECBCCCTTSCCCBS-CSHHHHHHHHTTTCSEEEEE
T ss_pred HHHHHHHHHHCCCcEeec----CCHH----HHHHHHHhCCCCEEeeEcCCCCccccccC-ChHHHHHHHHHcCCCEEEEc
Confidence 467999999988877643 2454 3677888888898 321 2222 23578889999999999987
Q ss_pred cCC-------CcHHHHHHHHhC--CCEEEEecCCHHHHHHHHHcCCCEE--EEecCCCCcccCCCCchhhhHHHHHHHhC
Q 020013 95 WGE-------YSEELVLEAHSA--GVKVVPQVGSFDEARKAVNAGVDAI--IVQGREAGGHVIGQDGLISLLPMVVDLIG 163 (332)
Q Consensus 95 ~g~-------~~~~~i~~~~~~--g~~v~~~v~s~~~a~~a~~~g~D~i--vv~G~eaGGh~~~~~~~~~ll~~i~~~~~ 163 (332)
... ...++++.+++. +.+++..+.+.++++.+++.|+|+| .+.|...+.+. .....+.+++++++.
T Consensus 109 ~~~~~~~~~~~~~~~i~~i~~~~~~~~v~~~~~t~~ea~~a~~~Gad~i~~~v~g~~~~~~~-~~~~~~~~i~~~~~~-- 185 (234)
T 1yxy_A 109 CTKRDRHDGLDIASFIRQVKEKYPNQLLMADISTFDEGLVAHQAGIDFVGTTLSGYTPYSRQ-EAGPDVALIEALCKA-- 185 (234)
T ss_dssp CCSSCCTTCCCHHHHHHHHHHHCTTCEEEEECSSHHHHHHHHHTTCSEEECTTTTSSTTSCC-SSSCCHHHHHHHHHT--
T ss_pred ccccCCCCCccHHHHHHHHHHhCCCCeEEEeCCCHHHHHHHHHcCCCEEeeeccccCCCCcC-CCCCCHHHHHHHHhC--
Confidence 431 235788888876 8899999999999999999999999 56666443321 122346777777663
Q ss_pred CCCCcEEeecCcCCHHHHHHHHHcCcceeeecccccc
Q 020013 164 DRDIPIIAAGGIVDARGYVAALSLGAQGICLGTRFVA 200 (332)
Q Consensus 164 ~~~iPviaaGGI~~~~~v~~al~~GA~gV~~GT~fl~ 200 (332)
++||+++|||.+++++.+++.+|||+|++||+|+.
T Consensus 186 --~ipvia~GGI~s~~~~~~~~~~Gad~v~vGsal~~ 220 (234)
T 1yxy_A 186 --GIAVIAEGKIHSPEEAKKINDLGVAGIVVGGAITR 220 (234)
T ss_dssp --TCCEEEESCCCSHHHHHHHHTTCCSEEEECHHHHC
T ss_pred --CCCEEEECCCCCHHHHHHHHHCCCCEEEEchHHhC
Confidence 59999999998899999999999999999999886
|
| >1vhn_A Putative flavin oxidoreducatase; structural genomics, unknown function; HET: FMN; 1.59A {Thermotoga maritima} SCOP: c.1.4.1 | Back alignment and structure |
|---|
Probab=99.61 E-value=1.2e-14 Score=135.22 Aligned_cols=185 Identities=16% Similarity=0.174 Sum_probs=128.2
Q ss_pred CCccceecCCCCCCCCcHHHHHHHHhCCCceeecCCCCCCHHHHH----HHHHHHHhhcCCcEEEEeecCCCC--HHHHH
Q 020013 8 GFEYGIVQAPLGPDISGPELVAAVANAGGLGLLRAPDWEAPDYLR----DLIRKTRSLTERPFGVGVVLAFPH--NENIK 81 (332)
Q Consensus 8 ~~~~Pii~apM~~g~s~~~la~avs~aGglG~i~~~~~~~~e~~~----~~i~~~r~~~~~p~gvnl~~~~~~--~~~~~ 81 (332)
.++.||+.+||. ++++..+...+++.|+ |++.++ +.+++.+. ..++.+....+.|+.++|+...+. .+..+
T Consensus 2 ~l~nri~~APM~-~~t~~~~r~~~~~~G~-gli~te-~~~~~~~~~~~~~~~~~l~~~~~~~~~~QL~g~~~~~~~~aa~ 78 (318)
T 1vhn_A 2 SLEVKVGLAPMA-GYTDSAFRTLAFEWGA-DFAFSE-MVSAKGFLMNSQKTEELLPQPHERNVAVQIFGSEPNELSEAAR 78 (318)
T ss_dssp ---CEEEECCCT-TTCSHHHHHHHHTTTC-CCEECS-CEEHHHHHTTCHHHHHHSCCTTCTTEEEEEECSCHHHHHHHHH
T ss_pred ccCCCEEECCCC-CCCcHHHHHHHHHHCc-CEEEeC-CEEEcccccCCHhHHHhhhCcCCCeEEEEeCCCCHHHHHHHHH
Confidence 467899999998 7999999988887764 888765 34443221 122333233568999999965431 12234
Q ss_pred HHHhcCCcEEEEccCCCcH-------------------HHHHHHHh-CCCEEEEecC-------CHHHHHHHHHcCCCEE
Q 020013 82 AILSEKVAVLQVSWGEYSE-------------------ELVLEAHS-AGVKVVPQVG-------SFDEARKAVNAGVDAI 134 (332)
Q Consensus 82 ~~~~~~~~~I~~~~g~~~~-------------------~~i~~~~~-~g~~v~~~v~-------s~~~a~~a~~~g~D~i 134 (332)
.+.+. +|.|.+++|+|.. ++++.+++ .+++|..++. +.+.++.+.+.|+|+|
T Consensus 79 ~a~~~-~d~Iein~gcP~~~~r~~~~G~~l~~~~~~~~eiv~~v~~~~~~pv~vKir~G~~~~~~~~~a~~l~~~G~d~i 157 (318)
T 1vhn_A 79 ILSEK-YKWIDLNAGCPVRKVVKEGAGGALLKDLRHFRYIVRELRKSVSGKFSVKTRLGWEKNEVEEIYRILVEEGVDEV 157 (318)
T ss_dssp HHTTT-CSEEEEEECCCCHHHHHTTCGGGGGSCHHHHHHHHHHHHHHCSSEEEEEEESCSSSCCHHHHHHHHHHTTCCEE
T ss_pred HHHHh-CCEEEEECCCCcHhcCCCCcccchhhCHHHHHHHHHHHHHhhCCCEEEEecCCCChHHHHHHHHHHHHhCCCEE
Confidence 44556 9999999887543 22444544 4778876642 2367888899999999
Q ss_pred EEecCCC-CcccCCCCchhhhHHHHHHHhCCCCCcEEeecCcCCHHHHHHHHH-cCcceeeeccccccCcc
Q 020013 135 IVQGREA-GGHVIGQDGLISLLPMVVDLIGDRDIPIIAAGGIVDARGYVAALS-LGAQGICLGTRFVASEE 203 (332)
Q Consensus 135 vv~G~ea-GGh~~~~~~~~~ll~~i~~~~~~~~iPviaaGGI~~~~~v~~al~-~GA~gV~~GT~fl~t~E 203 (332)
++.|... ++.. + ...+.+++++++ ++|||+.|||.+++++.++++ .|||+|++|++++..++
T Consensus 158 ~v~g~~~~~~~~-~-~~~~~~i~~i~~-----~ipVi~~GgI~s~~da~~~l~~~gad~V~iGR~~l~~P~ 221 (318)
T 1vhn_A 158 FIHTRTVVQSFT-G-RAEWKALSVLEK-----RIPTFVSGDIFTPEDAKRALEESGCDGLLVARGAIGRPW 221 (318)
T ss_dssp EEESSCTTTTTS-S-CCCGGGGGGSCC-----SSCEEEESSCCSHHHHHHHHHHHCCSEEEESGGGTTCTT
T ss_pred EEcCCCccccCC-C-CcCHHHHHHHHc-----CCeEEEECCcCCHHHHHHHHHcCCCCEEEECHHHHhCcc
Confidence 9987533 2222 1 234566665544 699999999999999999999 79999999999998765
|
| >3sgz_A Hydroxyacid oxidase 2; flavoprotein, homology, INH oxidoreductase-oxidoreductase inhibitor complex; HET: FMN HO6; 1.35A {Rattus norvegicus} PDB: 1tb3_A* | Back alignment and structure |
|---|
Probab=99.60 E-value=3.3e-14 Score=132.73 Aligned_cols=188 Identities=16% Similarity=0.155 Sum_probs=126.9
Q ss_pred hhcC--CccceecCCCCC-C--CCc--HHHHHHHHhCCCceeecCCCCCCHHHHHHHHHHHHhhcCCcEEEEeecCCCC-
Q 020013 5 GMLG--FEYGIVQAPLGP-D--ISG--PELVAAVANAGGLGLLRAPDWEAPDYLRDLIRKTRSLTERPFGVGVVLAFPH- 76 (332)
Q Consensus 5 ~~l~--~~~Pii~apM~~-g--~s~--~~la~avs~aGglG~i~~~~~~~~e~~~~~i~~~r~~~~~p~gvnl~~~~~~- 76 (332)
++|| +..||+.+|++. + ..+ ..++.+.+++|-.-++......+.|++.+ . ..+.|+-..+.++.+.
T Consensus 62 ~llG~~~~~P~~iaP~g~~~l~~~~ge~~~araa~~~gi~~~lSt~ss~s~e~v~~----~--~~~~~~wfQlY~~~d~~ 135 (352)
T 3sgz_A 62 TIQGQEISAPICISPTAFHSIAWPDGEKSTARAAQEANICYVISSYASYSLEDIVA----A--APEGFRWFQLYMKSDWD 135 (352)
T ss_dssp EETTEEESSSEEECCCSCGGGTCTTHHHHHHHHHHHHTCEEEECTTCSSCHHHHHH----H--STTCEEEEECCCCSCHH
T ss_pred EECCcccCCcceechHHHHHhcCccHHHHHHHHHHHcCCCeEeCCCCCCCHHHHHH----h--ccCccceeccccCCCHH
Confidence 5677 567999999863 1 122 34556666667555555433345554332 1 1234555565554331
Q ss_pred --HHHHHHHHhcCCcEEEEccCC---------------------------------------------CcHHHHHHHHh-
Q 020013 77 --NENIKAILSEKVAVLQVSWGE---------------------------------------------YSEELVLEAHS- 108 (332)
Q Consensus 77 --~~~~~~~~~~~~~~I~~~~g~---------------------------------------------~~~~~i~~~~~- 108 (332)
.+.++.+.+.|.+.+.+.... ..-+.++.+++
T Consensus 136 ~~~~l~~ra~~aG~~alvlTvD~p~~g~R~~d~r~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~w~~i~~lr~~ 215 (352)
T 3sgz_A 136 FNKQMVQRAEALGFKALVITIDTPVLGNRRRDKRNQLNLEANILKAALRALKEEKPTQSVPVLFPKASFCWNDLSLLQSI 215 (352)
T ss_dssp HHHHHHHHHHHTTCCCEEEECSCSSCCCCHHHHHHHHHSCHHHHTTCC---------------CCCTTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCCEEEEEeCCCCCCcchhhhhcCCCCCcccchhhhcccccccccchhhhhccCCCCCHHHHHHHHHh
Confidence 234555666677665543211 11145666665
Q ss_pred CCCEEE-EecCCHHHHHHHHHcCCCEEEEecCCCCccc-CCCCchhhhHHHHHHHhCCCCCcEEeecCcCCHHHHHHHHH
Q 020013 109 AGVKVV-PQVGSFDEARKAVNAGVDAIIVQGREAGGHV-IGQDGLISLLPMVVDLIGDRDIPIIAAGGIVDARGYVAALS 186 (332)
Q Consensus 109 ~g~~v~-~~v~s~~~a~~a~~~g~D~ivv~G~eaGGh~-~~~~~~~~ll~~i~~~~~~~~iPviaaGGI~~~~~v~~al~ 186 (332)
.+++++ ..+.+.++|+.+.+.|+|+|++.|. ||+. ++..+++..++++++.+.. ++|||++|||.++.|+.++|+
T Consensus 216 ~~~PvivK~v~~~e~A~~a~~~GaD~I~vsn~--GG~~~d~~~~~~~~L~~i~~av~~-~ipVia~GGI~~g~Dv~kaLa 292 (352)
T 3sgz_A 216 TRLPIILKGILTKEDAELAMKHNVQGIVVSNH--GGRQLDEVSASIDALREVVAAVKG-KIEVYMDGGVRTGTDVLKALA 292 (352)
T ss_dssp CCSCEEEEEECSHHHHHHHHHTTCSEEEECCG--GGTSSCSSCCHHHHHHHHHHHHTT-SSEEEEESSCCSHHHHHHHHH
T ss_pred cCCCEEEEecCcHHHHHHHHHcCCCEEEEeCC--CCCccCCCccHHHHHHHHHHHhCC-CCeEEEECCCCCHHHHHHHHH
Confidence 366665 5578999999999999999999886 5542 2335678999999988753 699999999999999999999
Q ss_pred cCcceeeeccccccC
Q 020013 187 LGAQGICLGTRFVAS 201 (332)
Q Consensus 187 ~GA~gV~~GT~fl~t 201 (332)
+||++|++||.|+..
T Consensus 293 lGA~aV~iGr~~l~~ 307 (352)
T 3sgz_A 293 LGARCIFLGRPILWG 307 (352)
T ss_dssp TTCSEEEESHHHHHH
T ss_pred cCCCEEEECHHHHHH
Confidence 999999999999864
|
| >2nzl_A Hydroxyacid oxidase 1; HAOX1, glycolate oxidase, GOX, GOX1, structural genomics, structural genom consortium, SGC, oxidoreductase; HET: FMN; 1.35A {Homo sapiens} PDB: 2rdu_A* 2rdt_A* 2rdw_A* 2w0u_A* | Back alignment and structure |
|---|
Probab=99.60 E-value=1.6e-14 Score=137.67 Aligned_cols=188 Identities=19% Similarity=0.217 Sum_probs=129.0
Q ss_pred hhcC--CccceecCCCCCCCCc-------HHHHHHHHhCCCceeecCCCCCCHHHHHHHHHHHHhhcCCcEEEEeecCCC
Q 020013 5 GMLG--FEYGIVQAPLGPDISG-------PELVAAVANAGGLGLLRAPDWEAPDYLRDLIRKTRSLTERPFGVGVVLAFP 75 (332)
Q Consensus 5 ~~l~--~~~Pii~apM~~g~s~-------~~la~avs~aGglG~i~~~~~~~~e~~~~~i~~~r~~~~~p~gvnl~~~~~ 75 (332)
++|| ++.||+.+||+ .+. ..++.++.++|...++......+.+++ ... ..+.|+.++++.+..
T Consensus 87 ~i~G~~l~~Pi~iAPmg--~~~l~~~~~e~~laraA~~~G~~~~~s~~~s~~le~v----~~~--~~~~~~~~QLy~~~d 158 (392)
T 2nzl_A 87 SVLGQRVSMPICVGATA--MQRMAHVDGELATVRACQSLGTGMMLSSWATSSIEEV----AEA--GPEALRWLQLYIYKD 158 (392)
T ss_dssp EETTEEESSSEEECCCS--CGGGTSTTHHHHHHHHHHHHTCEEEECTTCSSCHHHH----HHH--CTTSEEEEEECCBSS
T ss_pred EECCEecCCceEecccc--ccccccchHHHHHHHHHHHcCCCeeccchHHHHHHHH----HHh--cCCCcEEEEEEecCC
Confidence 4566 56899999994 332 248888888887666554322344432 221 135788888876433
Q ss_pred C---HHHHHHHHhcCCcEEEEccCCC------------------------------------------------------
Q 020013 76 H---NENIKAILSEKVAVLQVSWGEY------------------------------------------------------ 98 (332)
Q Consensus 76 ~---~~~~~~~~~~~~~~I~~~~g~~------------------------------------------------------ 98 (332)
. .+.++.+.+.+++++.+..+.+
T Consensus 159 ~~~~~~~~~ra~~~G~~al~itvd~p~~g~R~~d~r~~~~lp~~~~~~n~~~~~~~~~p~~~~~~g~~~~~~~~~~~d~~ 238 (392)
T 2nzl_A 159 REVTKKLVRQAEKMGYKAIFVTVDTPYLGNRLDDVRNRFKLPPQLRMKNFETSTLSFSPEENFGDDSGLAAYVAKAIDPS 238 (392)
T ss_dssp HHHHHHHHHHHHHTTCCCEEEECSCSSCCCCHHHHHHTCCCCTTCCCTTC-----------------CHHHHHHHHBCTT
T ss_pred HHHHHHHHHHHHHCCCCEEEEeCCCCCccchhHhHhhccCCccccchhhhhhhhcccCccccccCcchHHHHHhhcCChH
Confidence 1 3445566667887766532111
Q ss_pred -cHHHHHHHHh-CCCEEEE-ecCCHHHHHHHHHcCCCEEEEecCCCCccc-CCCCchhhhHHHHHHHhCCCCCcEEeecC
Q 020013 99 -SEELVLEAHS-AGVKVVP-QVGSFDEARKAVNAGVDAIIVQGREAGGHV-IGQDGLISLLPMVVDLIGDRDIPIIAAGG 174 (332)
Q Consensus 99 -~~~~i~~~~~-~g~~v~~-~v~s~~~a~~a~~~g~D~ivv~G~eaGGh~-~~~~~~~~ll~~i~~~~~~~~iPviaaGG 174 (332)
..+.++.+++ .+++|+. .+.++++++.+.++|+|+|++.|. ||+. +...+++..++++++.+.. ++|||++||
T Consensus 239 ~~~~~i~~lr~~~~~PvivKgv~~~e~A~~a~~aGad~I~vs~~--ggr~~~~g~~~~~~l~~v~~av~~-~ipVia~GG 315 (392)
T 2nzl_A 239 ISWEDIKWLRRLTSLPIVAKGILRGDDAREAVKHGLNGILVSNH--GARQLDGVPATIDVLPEIVEAVEG-KVEVFLDGG 315 (392)
T ss_dssp CCHHHHHHHC--CCSCEEEEEECCHHHHHHHHHTTCCEEEECCG--GGTSSTTCCCHHHHHHHHHHHHTT-SSEEEECSS
T ss_pred HHHHHHHHHHHhhCCCEEEEecCCHHHHHHHHHcCCCEEEeCCC--CCCcCCCCcChHHHHHHHHHHcCC-CCEEEEECC
Confidence 1122344444 3566664 578999999999999999999765 3432 2234678899999988743 599999999
Q ss_pred cCCHHHHHHHHHcCcceeeeccccccCcc
Q 020013 175 IVDARGYVAALSLGAQGICLGTRFVASEE 203 (332)
Q Consensus 175 I~~~~~v~~al~~GA~gV~~GT~fl~t~E 203 (332)
|.++.|+.++|++|||+|++|+.|+....
T Consensus 316 I~~g~Dv~kalalGAd~V~iGr~~l~~~~ 344 (392)
T 2nzl_A 316 VRKGTDVLKALALGAKAVFVGRPIVWGLA 344 (392)
T ss_dssp CCSHHHHHHHHHTTCSEEEECHHHHHHHH
T ss_pred CCCHHHHHHHHHhCCCeeEECHHHHHHHH
Confidence 99999999999999999999999997643
|
| >3vkj_A Isopentenyl-diphosphate delta-isomerase; type 2 isopentenyl diphosphate isomerase; HET: FNR; 1.70A {Sulfolobus shibatae} PDB: 2zrv_A* 2zrw_A* 2zrx_A* 2zry_A* 2zrz_A* 3b03_A* 3b04_A* 3b05_A* 3b06_A* 2zru_A* | Back alignment and structure |
|---|
Probab=99.59 E-value=2.1e-14 Score=135.51 Aligned_cols=188 Identities=14% Similarity=0.109 Sum_probs=122.6
Q ss_pred CccceecCCCCCCCCcHH------HHHHHHhCCCceeecCCC--CCCHHHHHHHHHHHHh-hcCCcEEEEeecCC----C
Q 020013 9 FEYGIVQAPLGPDISGPE------LVAAVANAGGLGLLRAPD--WEAPDYLRDLIRKTRS-LTERPFGVGVVLAF----P 75 (332)
Q Consensus 9 ~~~Pii~apM~~g~s~~~------la~avs~aGglG~i~~~~--~~~~e~~~~~i~~~r~-~~~~p~gvnl~~~~----~ 75 (332)
+++|++.+||++ .+... |+.++.+.|..-.++... ..+|+. .+..+-+|+ ..+.|+-.|+-..+ .
T Consensus 58 l~~Pv~ia~MtG-gt~~~~~in~~la~~a~~~G~~~~vGs~~~~l~~~~~-~~s~~~vr~~ap~~~~~anlg~~ql~~~~ 135 (368)
T 3vkj_A 58 ISVPVMVTGMTG-GRNELGRINKIIAEVAEKFGIPMGVGSQRVAIEKAEA-RESFAIVRKVAPTIPIIANLGMPQLVKGY 135 (368)
T ss_dssp ESSSEEECCCCC-SSHHHHHHHHHHHHHHHHHTCCEECCCCHHHHHCGGG-SHHHHHHHHHCSSSCEEEEEEGGGGGTTC
T ss_pred ccCCeEEecCCC-CCchhhHHHHHHHHHHHHhCCCeeeecchhccCCHHH-HhhHHHHHHhCcCcceecCcCeeecCCCC
Confidence 577999999984 55433 677777777544444320 113332 222222343 24567766665521 1
Q ss_pred CHHHHHH-HHhcCCcEEEEcc----------CCC-----cHHHHHHHHh-CCCEEEEe-c---CCHHHHHHHHHcCCCEE
Q 020013 76 HNENIKA-ILSEKVAVLQVSW----------GEY-----SEELVLEAHS-AGVKVVPQ-V---GSFDEARKAVNAGVDAI 134 (332)
Q Consensus 76 ~~~~~~~-~~~~~~~~I~~~~----------g~~-----~~~~i~~~~~-~g~~v~~~-v---~s~~~a~~a~~~g~D~i 134 (332)
..+.+.. +...+++++.+|. |+. ..+.++.+++ .+++|+.+ + .++++|+.+.++|+|+|
T Consensus 136 ~~~~~~~av~~~~a~al~Ihln~~~~~~~p~g~~~~~~~~~~~i~~i~~~~~vPVivK~vG~g~s~~~A~~l~~aGad~I 215 (368)
T 3vkj_A 136 GLKEFQDAIQMIEADAIAVHLNPAQEVFQPEGEPEYQIYALEKLRDISKELSVPIIVKESGNGISMETAKLLYSYGIKNF 215 (368)
T ss_dssp CHHHHHHHHHHTTCSEEEEECCHHHHHHSSSCCCBCBTHHHHHHHHHHTTCSSCEEEECSSSCCCHHHHHHHHHTTCCEE
T ss_pred CHHHHHHHHHHhcCCCeEEEecchhhhhCCCCCchhhHHHHHHHHHHHHHcCCCEEEEeCCCCCCHHHHHHHHhCCCCEE
Confidence 1233433 3334666666653 221 1345556655 47888876 5 48999999999999999
Q ss_pred EEecCCCCcccC----------------------C--CCchhhhHHHHHHHhCCCCCcEEeecCcCCHHHHHHHHHcCcc
Q 020013 135 IVQGREAGGHVI----------------------G--QDGLISLLPMVVDLIGDRDIPIIAAGGIVDARGYVAALSLGAQ 190 (332)
Q Consensus 135 vv~G~eaGGh~~----------------------~--~~~~~~ll~~i~~~~~~~~iPviaaGGI~~~~~v~~al~~GA~ 190 (332)
++.|. ||..+ . ..++...++++++.++ ++|||++|||.++.|+.+++++|||
T Consensus 216 ~V~g~--GGt~~~~iE~~R~~~~~~~~~~~~~~~~~~g~pt~~~l~~v~~~~~--~ipvia~GGI~~~~d~~kal~lGA~ 291 (368)
T 3vkj_A 216 DTSGQ--GGTNWIAIEMIRDIRRGNWKAESAKNFLDWGVPTAASIMEVRYSVP--DSFLVGSGGIRSGLDAAKAIALGAD 291 (368)
T ss_dssp ECCCB--TSBCHHHHHHHHHHHTTCTHHHHHHHTTTCSCBHHHHHHHHHHHST--TCEEEEESSCCSHHHHHHHHHHTCS
T ss_pred EEeCC--CCCcccchhhhhcccccccchhhccccccccccHHHHHHHHHHHcC--CCcEEEECCCCCHHHHHHHHHcCCC
Confidence 99887 55210 0 1244566778888774 5999999999999999999999999
Q ss_pred eeeeccccccCc
Q 020013 191 GICLGTRFVASE 202 (332)
Q Consensus 191 gV~~GT~fl~t~ 202 (332)
+|++|+.|+.+.
T Consensus 292 ~v~ig~~~l~~~ 303 (368)
T 3vkj_A 292 IAGMALPVLKSA 303 (368)
T ss_dssp EEEECHHHHHHH
T ss_pred EEEEcHHHHHHH
Confidence 999999999743
|
| >1kbi_A Cytochrome B2, L-LCR; flavocytochrome B2, electron transfer, oxidoreductase; HET: HEM FMN; 2.30A {Saccharomyces cerevisiae} SCOP: c.1.4.1 d.120.1.1 PDB: 1fcb_A* 1lco_A* 1ldc_A* 1sze_A* 2oz0_A* 1szf_A* 1szg_A* 1ltd_A* 1kbj_A* 1qcw_A* 3ks0_A* | Back alignment and structure |
|---|
Probab=99.58 E-value=4.9e-14 Score=138.52 Aligned_cols=194 Identities=15% Similarity=0.219 Sum_probs=128.0
Q ss_pred hhcC--CccceecCCCCC---CC---CcHHHHHHHHh--CCCceeecCCCCCCHHHHHHHHHHHHhhcCCcEEEEeecCC
Q 020013 5 GMLG--FEYGIVQAPLGP---DI---SGPELVAAVAN--AGGLGLLRAPDWEAPDYLRDLIRKTRSLTERPFGVGVVLAF 74 (332)
Q Consensus 5 ~~l~--~~~Pii~apM~~---g~---s~~~la~avs~--aGglG~i~~~~~~~~e~~~~~i~~~r~~~~~p~gvnl~~~~ 74 (332)
++|| ++.||+.+||++ +. .+..++.+..+ +|..-++......+.+.+. +.......|+.+.+++..
T Consensus 182 ~i~G~~l~~Pi~iAPma~~~l~~~~~~e~alaraA~~~~~G~~~~~s~~a~~s~e~v~----~~~~~~~~~~~~QLy~~~ 257 (511)
T 1kbi_A 182 DMLGSHVDVPFYVSATALCKLGNPLEGEKDVARGCGQGVTKVPQMISTLASCSPEEII----EAAPSDKQIQWYQLYVNS 257 (511)
T ss_dssp EETTEEESSSEEECCCSCGGGTCTTTTHHHHHHHHHSSSSCCCEEECTTCSSCHHHHH----HTCCCSSCCEEEEECCCS
T ss_pred ccCCccCCCCeEeccchhccccChhhHHHHHHHHHHHhCCCeeEEeCCcccCCHHHHH----hhcCCCCCCeEEEEeecC
Confidence 4556 568999999983 21 24556666655 5543333321123444322 111012457777776433
Q ss_pred CC---HHHHHHHHhcCCcEEEEccCCC----------------------------------------------cHHHHHH
Q 020013 75 PH---NENIKAILSEKVAVLQVSWGEY----------------------------------------------SEELVLE 105 (332)
Q Consensus 75 ~~---~~~~~~~~~~~~~~I~~~~g~~----------------------------------------------~~~~i~~ 105 (332)
.. .+.++.+.+.|++.|.++.+.+ .-+.++.
T Consensus 258 d~~~~~~~~~rae~aG~~al~itvd~p~~g~R~~~~r~g~~~p~~~~~~~~g~~~~~~~g~~~~~~~~~d~~~~~~~i~~ 337 (511)
T 1kbi_A 258 DRKITDDLVKNVEKLGVKALFVTVDAPSLGQREKDMKLKFSNTKAGPKAMKKTNVEESQGASRALSKFIDPSLTWKDIEE 337 (511)
T ss_dssp SHHHHHHHHHHHHHHTCSCEEEECSCSSCCCCHHHHHHHHTTCC-------CCCCSSCCCGGGGCBTTBCTTCCHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCCEEEEeCCCCCccccHHHHhccCCCCcccccccccccccccccHHHHHhhccChHhHHHHHHH
Confidence 21 2345556667888765554311 0234566
Q ss_pred HHh-CCCEEEE-ecCCHHHHHHHHHcCCCEEEEecCCCCccc-CCCCchhhhHHHHHHHhCC----CCCcEEeecCcCCH
Q 020013 106 AHS-AGVKVVP-QVGSFDEARKAVNAGVDAIIVQGREAGGHV-IGQDGLISLLPMVVDLIGD----RDIPIIAAGGIVDA 178 (332)
Q Consensus 106 ~~~-~g~~v~~-~v~s~~~a~~a~~~g~D~ivv~G~eaGGh~-~~~~~~~~ll~~i~~~~~~----~~iPviaaGGI~~~ 178 (332)
+++ .+++|+. .+.++++|+.+.++|+|+|++.|. ||.. ....+.+..++++++.+.. .++|||++|||.++
T Consensus 338 lr~~~~~PvivKgv~~~e~A~~a~~aGad~I~vs~h--gG~~~d~~~~~~~~l~~v~~~v~~~~~~~~ipVia~GGI~~g 415 (511)
T 1kbi_A 338 LKKKTKLPIVIKGVQRTEDVIKAAEIGVSGVVLSNH--GGRQLDFSRAPIEVLAETMPILEQRNLKDKLEVFVDGGVRRG 415 (511)
T ss_dssp HHHHCSSCEEEEEECSHHHHHHHHHTTCSEEEECCT--TTTSSTTCCCHHHHHHHHHHHHHTTTCBTTBEEEEESSCCSH
T ss_pred HHHHhCCcEEEEeCCCHHHHHHHHHcCCCEEEEcCC--CCccCCCCCchHHHHHHHHHHHHhhccCCCcEEEEECCCCCH
Confidence 665 4777665 478899999999999999999664 4432 2224568889999888731 26999999999999
Q ss_pred HHHHHHHHcCcceeeeccccccCccC
Q 020013 179 RGYVAALSLGAQGICLGTRFVASEES 204 (332)
Q Consensus 179 ~~v~~al~~GA~gV~~GT~fl~t~Es 204 (332)
.|+.++|++|||+|+||+.|+....+
T Consensus 416 ~Dv~kaLalGAdaV~iGr~~l~~~~~ 441 (511)
T 1kbi_A 416 TDVLKALCLGAKGVGLGRPFLYANSC 441 (511)
T ss_dssp HHHHHHHHHTCSEEEECHHHHHHHHH
T ss_pred HHHHHHHHcCCCEEEECHHHHHHHHh
Confidence 99999999999999999999987644
|
| >1xi3_A Thiamine phosphate pyrophosphorylase; structural genomics, southeast collaboratory for structural genomics, hyperthermophIle; 1.70A {Pyrococcus furiosus} SCOP: c.1.3.1 | Back alignment and structure |
|---|
Probab=99.57 E-value=3e-14 Score=124.60 Aligned_cols=168 Identities=18% Similarity=0.206 Sum_probs=121.3
Q ss_pred HHHHHHHHhCCCceeecCC-CCCCHHHHHHHHHHHHhhcCCcEEEEeecCCCCHHHHHHHHhcCCcEEEEccCCCcHHHH
Q 020013 25 PELVAAVANAGGLGLLRAP-DWEAPDYLRDLIRKTRSLTERPFGVGVVLAFPHNENIKAILSEKVAVLQVSWGEYSEELV 103 (332)
Q Consensus 25 ~~la~avs~aGglG~i~~~-~~~~~e~~~~~i~~~r~~~~~p~gvnl~~~~~~~~~~~~~~~~~~~~I~~~~g~~~~~~i 103 (332)
.+.+.+..++| +..+... ...+++.+.+.++++++.+. +++++++++ +.++.+.+.|+++|+++.++.+.+.+
T Consensus 29 ~~~~~~~~~~G-~~~i~l~~~~~~~~~~~~~~~~l~~~~~-~~~v~v~v~----~~~~~a~~~gad~v~l~~~~~~~~~~ 102 (215)
T 1xi3_A 29 VESVREALEGG-ATAIQMRIKNAPTREMYEIGKTLRQLTR-EYDALFFVD----DRVDVALAVDADGVQLGPEDMPIEVA 102 (215)
T ss_dssp HHHHHHHHHTT-CSEEEECCCSCCHHHHHHHHHHHHHHHH-HTTCEEEEE----SCHHHHHHHTCSEEEECTTSCCHHHH
T ss_pred HHHHHHHHHCC-CCEEEECCCCCCHHHHHHHHHHHHHHHH-HcCCeEEEc----ChHHHHHHcCCCEEEECCccCCHHHH
Confidence 36666665555 4555331 12466666677777766543 356666764 35678888999999997655555666
Q ss_pred HHHHhCCCEEEEecCCHHHHHHHHHcCCCEEEEec-CCCCcccCCCCchhhhHHHHHHHhCCCCCcEEeecCcCCHHHHH
Q 020013 104 LEAHSAGVKVVPQVGSFDEARKAVNAGVDAIIVQG-REAGGHVIGQDGLISLLPMVVDLIGDRDIPIIAAGGIVDARGYV 182 (332)
Q Consensus 104 ~~~~~~g~~v~~~v~s~~~a~~a~~~g~D~ivv~G-~eaGGh~~~~~~~~~ll~~i~~~~~~~~iPviaaGGI~~~~~v~ 182 (332)
+.+. .++.+...+.+.+++..+.+.|+|+|++.+ +..+++.++....+..++++++.. ++||+++|||. ++++.
T Consensus 103 ~~~~-~~~~~~v~~~t~~e~~~~~~~g~d~i~~~~~~~~~~~~~~~~~~~~~l~~l~~~~---~~pvia~GGI~-~~nv~ 177 (215)
T 1xi3_A 103 KEIA-PNLIIGASVYSLEEALEAEKKGADYLGAGSVFPTKTKEDARVIGLEGLRKIVESV---KIPVVAIGGIN-KDNAR 177 (215)
T ss_dssp HHHC-TTSEEEEEESSHHHHHHHHHHTCSEEEEECSSCC----CCCCCHHHHHHHHHHHC---SSCEEEESSCC-TTTHH
T ss_pred HHhC-CCCEEEEecCCHHHHHHHHhcCCCEEEEcCCccCCCCCCCCCcCHHHHHHHHHhC---CCCEEEECCcC-HHHHH
Confidence 6665 677777888999999989999999999976 344444322345678888888766 79999999995 99999
Q ss_pred HHHHcCcceeeeccccccCcc
Q 020013 183 AALSLGAQGICLGTRFVASEE 203 (332)
Q Consensus 183 ~al~~GA~gV~~GT~fl~t~E 203 (332)
+++.+||++|.+||+++.+++
T Consensus 178 ~~~~~Ga~gv~vgs~i~~~~d 198 (215)
T 1xi3_A 178 EVLKTGVDGIAVISAVMGAED 198 (215)
T ss_dssp HHHTTTCSEEEESHHHHTSSS
T ss_pred HHHHcCCCEEEEhHHHhCCCC
Confidence 999999999999999998753
|
| >1vcf_A Isopentenyl-diphosphate delta-isomerase; TIM barrel, structural genomics, riken structural genomics/P initiative, RSGI; HET: FMN; 2.60A {Thermus thermophilus} SCOP: c.1.4.1 PDB: 1vcg_A* 3dh7_A* | Back alignment and structure |
|---|
Probab=99.56 E-value=4e-14 Score=132.40 Aligned_cols=192 Identities=16% Similarity=0.120 Sum_probs=124.9
Q ss_pred hhcC--CccceecCCCCCCCC-c-----HHHHHHHHhCCCceeecCCCCCC-HHH--HHHHHHHHHhh-cCCcEEEEeec
Q 020013 5 GMLG--FEYGIVQAPLGPDIS-G-----PELVAAVANAGGLGLLRAPDWEA-PDY--LRDLIRKTRSL-TERPFGVGVVL 72 (332)
Q Consensus 5 ~~l~--~~~Pii~apM~~g~s-~-----~~la~avs~aGglG~i~~~~~~~-~e~--~~~~i~~~r~~-~~~p~gvnl~~ 72 (332)
+++| ++.|++.+||++ .+ . ..++.++.++|..-.++. ..+ .+. .....+ ++.. .+.|+..|+-.
T Consensus 51 ~i~g~~l~~P~~iapm~g-~~~~~~~~~~~la~~a~~~G~~~~~~~--~~~~le~~~~~~~~q-l~~~~~d~pv~~~~~~ 126 (332)
T 1vcf_A 51 PFLGKTLKAPFLIGAMTG-GEENGERINLALAEAAEALGVGMMLGS--GRILLERPEALRSFR-VRKVAPKALLIANLGL 126 (332)
T ss_dssp EETTEEESSSEEECCCC----CCHHHHHHHHHHHHHHHTCEEEEEE--CHHHHHCTTTHHHHC-CTTTCSSSCEEEEEEG
T ss_pred EECCcccCCceEEecccc-CCcchhHHHHHHHHHHHHcCCCEEeCC--chhcccCCCccceEE-eeccCCCceeecccCh
Confidence 3455 678999999984 44 2 377888888874333322 111 110 011111 2322 46788777653
Q ss_pred CC---CC-HHHHHHHHhcCCcEEEEccC---------CCc----HHHHHHHHhCCCEEEEe-c---CCHHHHHHHHHcCC
Q 020013 73 AF---PH-NENIKAILSEKVAVLQVSWG---------EYS----EELVLEAHSAGVKVVPQ-V---GSFDEARKAVNAGV 131 (332)
Q Consensus 73 ~~---~~-~~~~~~~~~~~~~~I~~~~g---------~~~----~~~i~~~~~~g~~v~~~-v---~s~~~a~~a~~~g~ 131 (332)
.+ .. +...+.+...+++.+.++.. ... .+.++.+++.+++|+.+ + .++++++.+.+.|+
T Consensus 127 ~q~~~~~~~~~~~a~~~~~~~a~~i~~n~~~~~~~~~~~~~~~~~~~i~~vr~~~~Pv~vK~v~~g~~~e~a~~~~~~G~ 206 (332)
T 1vcf_A 127 AQLRRYGRDDLLRLVEMLEADALAFHVNPLQEAVQRGDTDFRGLVERLAELLPLPFPVMVKEVGHGLSREAALALRDLPL 206 (332)
T ss_dssp GGGGTCCHHHHHHHHHHHTCSEEEEECCHHHHHHTTSCCCCTTHHHHHHHHCSCSSCEEEECSSSCCCHHHHHHHTTSCC
T ss_pred hhhhccChHHHHHHHhhcCCCceeeccchHHHHhcCCCccHHHHHHHHHHHHcCCCCEEEEecCCCCCHHHHHHHHHcCC
Confidence 21 11 22233333346777655521 111 35667776667888888 7 78999999999999
Q ss_pred CEEEEecCCCCc-------c----------cCCCCchhhhHHHHHHHhCCCCCcEEeecCcCCHHHHHHHHHcCcceeee
Q 020013 132 DAIIVQGREAGG-------H----------VIGQDGLISLLPMVVDLIGDRDIPIIAAGGIVDARGYVAALSLGAQGICL 194 (332)
Q Consensus 132 D~ivv~G~eaGG-------h----------~~~~~~~~~ll~~i~~~~~~~~iPviaaGGI~~~~~v~~al~~GA~gV~~ 194 (332)
|+|++.|...+. + .....+++..++++++.++ ++|||++|||.+++++.++|++|||+|++
T Consensus 207 d~I~vs~~ggt~~~~~~~~r~~~~~~~~~~~~~g~~~~~~l~~v~~~~~--~ipvia~GGI~~~~d~~kal~~GAd~V~i 284 (332)
T 1vcf_A 207 AAVDVAGAGGTSWARVEEWVRFGEVRHPELCEIGIPTARAILEVREVLP--HLPLVASGGVYTGTDGAKALALGADLLAV 284 (332)
T ss_dssp SEEECCCBTSCCHHHHHHTC--------CCTTCSCBHHHHHHHHHHHCS--SSCEEEESSCCSHHHHHHHHHHTCSEEEE
T ss_pred CEEEeCCCCCCcchhHHHhhccccchhhhHhhccccHHHHHHHHHHhcC--CCeEEEECCCCCHHHHHHHHHhCCChHhh
Confidence 999998763211 1 1122366788899988774 69999999999999999999999999999
Q ss_pred ccccccCc
Q 020013 195 GTRFVASE 202 (332)
Q Consensus 195 GT~fl~t~ 202 (332)
|+.|+...
T Consensus 285 gr~~l~~~ 292 (332)
T 1vcf_A 285 ARPLLRPA 292 (332)
T ss_dssp CGGGHHHH
T ss_pred hHHHHHHH
Confidence 99999754
|
| >1gox_A (S)-2-hydroxy-acid oxidase, peroxisomal; oxidoreductase (oxygen(A)); HET: FMN; 2.00A {Spinacia oleracea} SCOP: c.1.4.1 PDB: 1gyl_A* 1al8_A* 1al7_A* 2cdh_0 | Back alignment and structure |
|---|
Probab=99.56 E-value=2.7e-13 Score=128.50 Aligned_cols=185 Identities=21% Similarity=0.211 Sum_probs=127.1
Q ss_pred hhcC--CccceecCCCCCCCCcH-------HHHHHHHhCCCceeecCCCCCCHHHHHHHHHHHHhhcCCcEEEEeecCCC
Q 020013 5 GMLG--FEYGIVQAPLGPDISGP-------ELVAAVANAGGLGLLRAPDWEAPDYLRDLIRKTRSLTERPFGVGVVLAFP 75 (332)
Q Consensus 5 ~~l~--~~~Pii~apM~~g~s~~-------~la~avs~aGglG~i~~~~~~~~e~~~~~i~~~r~~~~~p~gvnl~~~~~ 75 (332)
+++| ++.|++.+||+ .++. .++.++.++|...+++.....+. +++......|..+++++..+
T Consensus 64 ~i~G~~~~~Pi~iAPmg--~~~l~~~~~e~a~a~aa~~~G~~~~~s~~~~~~i-------eev~~~~~~~~~~QLy~~~d 134 (370)
T 1gox_A 64 TILGFKISMPIMIAPTA--MQKMAHPEGEYATARAASAAGTIMTLSSWATSSV-------EEVASTGPGIRFFQLYVYKD 134 (370)
T ss_dssp EETTEEESSSEEECCCS--CGGGTCTTHHHHHHHHHHHTTCCEEECTTCSSCH-------HHHHTTCCCCEEEEECCBSS
T ss_pred EECCcccCCceeEcccc--hhhhccchHHHHHHHHHHHcCCCeeccCCCCCCH-------HHHHhhcCCCceEEEecCCC
Confidence 3455 56899999995 3322 28888888887666654221222 22333323677777764432
Q ss_pred C---HHHHHHHHhcCCcEEEEccCCC----------------------------------------------------cH
Q 020013 76 H---NENIKAILSEKVAVLQVSWGEY----------------------------------------------------SE 100 (332)
Q Consensus 76 ~---~~~~~~~~~~~~~~I~~~~g~~----------------------------------------------------~~ 100 (332)
. .+.++.+.+.|++++.++.+.+ ..
T Consensus 135 ~~~~~~~~~~a~~~G~~ai~it~d~p~~g~r~~d~r~~~~~p~~~~~~~~~~~~~~~~~~~~g~~~~~~v~~~~~~~~~~ 214 (370)
T 1gox_A 135 RNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFVLPPFLTLKNFEGIDLGKMDKANDSGLSSYVAGQIDRSLSW 214 (370)
T ss_dssp HHHHHHHHHHHHHTTCCEEEEECSCSSCCCCHHHHHTTCCCCTTCCCGGGSSSCCC---------HHHHHHHTBCTTCCH
T ss_pred chHHHHHHHHHHHCCCCEEEEeCCCCcccccHHHHHhccCCCcccchhhhhhhhhhccccccCccHHHHHHhhcCccchH
Confidence 1 2345566667888876654321 11
Q ss_pred HHHHHHHh-CCCEEEE-ecCCHHHHHHHHHcCCCEEEEecCCCCcc-cCCCCchhhhHHHHHHHhCCCCCcEEeecCcCC
Q 020013 101 ELVLEAHS-AGVKVVP-QVGSFDEARKAVNAGVDAIIVQGREAGGH-VIGQDGLISLLPMVVDLIGDRDIPIIAAGGIVD 177 (332)
Q Consensus 101 ~~i~~~~~-~g~~v~~-~v~s~~~a~~a~~~g~D~ivv~G~eaGGh-~~~~~~~~~ll~~i~~~~~~~~iPviaaGGI~~ 177 (332)
+.++.+++ .+++++. .+.++++++.+.+.|+|+|++.+. ||. ..+..+++..++++++.++. ++|||++|||.+
T Consensus 215 ~~i~~l~~~~~~pv~vK~~~~~e~a~~a~~~Gad~I~vs~~--ggr~~~~~~~~~~~l~~v~~~~~~-~ipvia~GGI~~ 291 (370)
T 1gox_A 215 KDVAWLQTITSLPILVKGVITAEDARLAVQHGAAGIIVSNH--GARQLDYVPATIMALEEVVKAAQG-RIPVFLDGGVRR 291 (370)
T ss_dssp HHHHHHHHHCCSCEEEECCCSHHHHHHHHHTTCSEEEECCG--GGTSSTTCCCHHHHHHHHHHHTTT-SSCEEEESSCCS
T ss_pred HHHHHHHHHhCCCEEEEecCCHHHHHHHHHcCCCEEEECCC--CCccCCCcccHHHHHHHHHHHhCC-CCEEEEECCCCC
Confidence 23444444 5778776 678999999999999999999654 222 12234678889999887743 699999999999
Q ss_pred HHHHHHHHHcCcceeeeccccccC
Q 020013 178 ARGYVAALSLGAQGICLGTRFVAS 201 (332)
Q Consensus 178 ~~~v~~al~~GA~gV~~GT~fl~t 201 (332)
++|+.+++++|||+|++|+.|+..
T Consensus 292 ~~D~~k~l~~GAdaV~iGr~~l~~ 315 (370)
T 1gox_A 292 GTDVFKALALGAAGVFIGRPVVFS 315 (370)
T ss_dssp HHHHHHHHHHTCSEEEECHHHHHH
T ss_pred HHHHHHHHHcCCCEEeecHHHHHH
Confidence 999999999999999999999864
|
| >1yad_A Regulatory protein TENI; TIM barrel, transcription; 2.10A {Bacillus subtilis} PDB: 3qh2_A* | Back alignment and structure |
|---|
Probab=99.55 E-value=6.4e-14 Score=123.45 Aligned_cols=171 Identities=19% Similarity=0.203 Sum_probs=123.9
Q ss_pred CCCceeecCC-CCCCHHHHHHHHHHHHhhcCCcEEEEeecCCCCHHHHHHHHhcCCcEEEEccCCCcHHHHHHHHhCCCE
Q 020013 34 AGGLGLLRAP-DWEAPDYLRDLIRKTRSLTERPFGVGVVLAFPHNENIKAILSEKVAVLQVSWGEYSEELVLEAHSAGVK 112 (332)
Q Consensus 34 aGglG~i~~~-~~~~~e~~~~~i~~~r~~~~~p~gvnl~~~~~~~~~~~~~~~~~~~~I~~~~g~~~~~~i~~~~~~g~~ 112 (332)
.+|+.++... ...+++++.+.++++++.+. ++. +++++ +.++.+.+.++|.|+++....+.+.++.+.. ++.
T Consensus 40 ~~G~~~v~lr~~~~~~~~~~~~~~~l~~~~~-~~~-~l~v~----~~~~~a~~~gad~v~l~~~~~~~~~~~~~~~-~~~ 112 (221)
T 1yad_A 40 QNEVDFIHIRERSKSAADILKLLDLIFEGGI-DKR-KLVMN----GRVDIALFSTIHRVQLPSGSFSPKQIRARFP-HLH 112 (221)
T ss_dssp GGGCSEEEECCTTSCHHHHHHHHHHHHHTTC-CGG-GEEEE----SCHHHHHTTTCCEEEECTTSCCHHHHHHHCT-TCE
T ss_pred HCCCCEEEEccCCCCHHHHHHHHHHHHHhcC-cCC-eEEEe----ChHHHHHHcCCCEEEeCCCccCHHHHHHHCC-CCE
Confidence 3566677531 12467778888888887643 444 66664 3568889999999999976556666666654 888
Q ss_pred EEEecCCHHHHHHHHHcCCCEEEEecCCCC-cccCCCCchhhhHHHHHHHhCCCCCcEEeecCcCCHHHHHHHHHcCcce
Q 020013 113 VVPQVGSFDEARKAVNAGVDAIIVQGREAG-GHVIGQDGLISLLPMVVDLIGDRDIPIIAAGGIVDARGYVAALSLGAQG 191 (332)
Q Consensus 113 v~~~v~s~~~a~~a~~~g~D~ivv~G~eaG-Gh~~~~~~~~~ll~~i~~~~~~~~iPviaaGGI~~~~~v~~al~~GA~g 191 (332)
+...+++.++++.+.+.|+|+|++...-.+ .+.+.....+.+++++++.. ++||+++||| +++++.+++.+||++
T Consensus 113 ig~sv~t~~~~~~a~~~gaD~i~~~~~f~~~~~~g~~~~~~~~l~~~~~~~---~~pvia~GGI-~~~nv~~~~~~Ga~g 188 (221)
T 1yad_A 113 IGRSVHSLEEAVQAEKEDADYVLFGHVFETDCKKGLEGRGVSLLSDIKQRI---SIPVIAIGGM-TPDRLRDVKQAGADG 188 (221)
T ss_dssp EEEEECSHHHHHHHHHTTCSEEEEECCC----------CHHHHHHHHHHHC---CSCEEEESSC-CGGGHHHHHHTTCSE
T ss_pred EEEEcCCHHHHHHHHhCCCCEEEECCccccCCCCCCCCCCHHHHHHHHHhC---CCCEEEECCC-CHHHHHHHHHcCCCE
Confidence 888999999999999999999998442111 11111224577888887766 7999999999 999999999999999
Q ss_pred eeeccccccCcc-CCCCHHHHHHHh
Q 020013 192 ICLGTRFVASEE-SYAHPEYKRKLV 215 (332)
Q Consensus 192 V~~GT~fl~t~E-s~~~~~~k~~~~ 215 (332)
|.+||+++.+++ ......+++.+.
T Consensus 189 v~vgs~i~~~~d~~~~~~~~~~~~~ 213 (221)
T 1yad_A 189 IAVMSGIFSSAEPLEAARRYSRKLK 213 (221)
T ss_dssp EEESHHHHTSSSHHHHHHHHHHHHH
T ss_pred EEEhHHhhCCCCHHHHHHHHHHHHH
Confidence 999999998766 334455555554
|
| >1nsj_A PRAI, phosphoribosyl anthranilate isomerase; thermostability; 2.00A {Thermotoga maritima} SCOP: c.1.2.4 PDB: 1lbm_A 1dl3_A | Back alignment and structure |
|---|
Probab=99.53 E-value=3.3e-13 Score=117.32 Aligned_cols=169 Identities=17% Similarity=0.191 Sum_probs=125.4
Q ss_pred CCCcHHHHHHHHhCC--Cceeec---CCCCCCHHHHHHHHHHHHhhcCCcEEEEeecCCCCHHHHHHHHhcCCcEEEEcc
Q 020013 21 DISGPELVAAVANAG--GLGLLR---APDWEAPDYLRDLIRKTRSLTERPFGVGVVLAFPHNENIKAILSEKVAVLQVSW 95 (332)
Q Consensus 21 g~s~~~la~avs~aG--glG~i~---~~~~~~~e~~~~~i~~~r~~~~~p~gvnl~~~~~~~~~~~~~~~~~~~~I~~~~ 95 (332)
|+++++.+.++.++| .+||+. ++++.+++..+++.+.++ ..+..|+++++.+.++..+.+.+.+.|+|++|
T Consensus 8 Git~~eda~~a~~~GaD~iGfif~~~SpR~V~~~~a~~i~~~~~---~~~~~VgVfvn~~~~~i~~~~~~~~ld~vQLH- 83 (205)
T 1nsj_A 8 GITNLEDALFSVESGADAVGFVFYPKSKRYISPEDARRISVELP---PFVFRVGVFVNEEPEKILDVASYVQLNAVQLH- 83 (205)
T ss_dssp CCCSHHHHHHHHHHTCSEEEEECCTTCTTBCCHHHHHHHHHHSC---SSSEEEEEESSCCHHHHHHHHHHHTCSEEEEC-
T ss_pred CCCcHHHHHHHHHcCCCEEEEEecCCCCCcCCHHHHHHHHHhCC---CCCCEEEEEeCCCHHHHHHHHHhhCCCEEEEC-
Confidence 689999999999988 599995 345667887776655443 34567888998876666777788899999999
Q ss_pred CCCcHHHHHHHHhCCCEEEEe--cCCHHHHHHHHHcCCCEEEEecCC--CCcccCCCCchhhhHHHHHHHhCCCCCcEEe
Q 020013 96 GEYSEELVLEAHSAGVKVVPQ--VGSFDEARKAVNAGVDAIIVQGRE--AGGHVIGQDGLISLLPMVVDLIGDRDIPIIA 171 (332)
Q Consensus 96 g~~~~~~i~~~~~~g~~v~~~--v~s~~~a~~a~~~g~D~ivv~G~e--aGGh~~~~~~~~~ll~~i~~~~~~~~iPvia 171 (332)
|++++++++.++. ++++|.. +.+..+...+....+|+++++... .||. |....|.+++.+. .. +.|++.
T Consensus 84 G~e~~~~~~~l~~-~~~vika~~v~~~~~l~~~~~~~~d~~LlD~~~~~~GGt--G~~fdw~~l~~~~-~~---~~p~~L 156 (205)
T 1nsj_A 84 GEEPIELCRKIAE-RILVIKAVGVSNERDMERALNYREFPILLDTKTPEYGGS--GKTFDWSLILPYR-DR---FRYLVL 156 (205)
T ss_dssp SCCCHHHHHHHHT-TSEEEEEEEESSHHHHHHHGGGTTSCEEEEESCSSSSSC--CSCCCGGGTGGGG-GG---SSCEEE
T ss_pred CCCCHHHHHHHhc-CCCEEEEEEcCCHHHHHHHHHcCCCEEEECCCCCCCCCC--CCccCHHHHHhhh-cC---CCcEEE
Confidence 6667888888863 4777754 455555544444459999998653 2443 4445677776532 12 579999
Q ss_pred ecCcCCHHHHHHHHH-cCcceeeeccccccC
Q 020013 172 AGGIVDARGYVAALS-LGAQGICLGTRFVAS 201 (332)
Q Consensus 172 aGGI~~~~~v~~al~-~GA~gV~~GT~fl~t 201 (332)
+||| +++|+.+++. .++.||-+.|.+=.+
T Consensus 157 AGGL-~peNV~~ai~~~~p~gVDvsSGvE~~ 186 (205)
T 1nsj_A 157 SGGL-NPENVRSAIDVVRPFAVDVSSGVEAF 186 (205)
T ss_dssp ESSC-CTTTHHHHHHHHCCSEEEESGGGEEE
T ss_pred ECCC-CHHHHHHHHHhcCCCEEEECCceecC
Confidence 9999 8999999887 699999999987643
|
| >4e38_A Keto-hydroxyglutarate-aldolase/keto-deoxy-phospho aldolase; lyase; 1.64A {Vibrionales bacterium swat-3} | Back alignment and structure |
|---|
Probab=99.52 E-value=1.4e-13 Score=121.35 Aligned_cols=171 Identities=23% Similarity=0.351 Sum_probs=129.6
Q ss_pred cceecCCCCCCCCcHHHHHHHHhC---CCceeecCCCCCCHHHHHHHHHHHHhh-cCCcEEEEeecCCCCHHHHHHHHhc
Q 020013 11 YGIVQAPLGPDISGPELVAAVANA---GGLGLLRAPDWEAPDYLRDLIRKTRSL-TERPFGVGVVLAFPHNENIKAILSE 86 (332)
Q Consensus 11 ~Pii~apM~~g~s~~~la~avs~a---GglG~i~~~~~~~~e~~~~~i~~~r~~-~~~p~gvnl~~~~~~~~~~~~~~~~ 86 (332)
.||| |.- ...+++.+..++++ ||+..+.. .+.+++. .+.|+++++. .+.-+|.+.++ +.++++.++++
T Consensus 34 ~~vv--~Vi-r~~~~~~a~~~a~al~~gGi~~iEv-t~~t~~a-~e~I~~l~~~~~~~~iGaGTVl---t~~~a~~Ai~A 105 (232)
T 4e38_A 34 LKVI--PVI-AIDNAEDIIPLGKVLAENGLPAAEI-TFRSDAA-VEAIRLLRQAQPEMLIGAGTIL---NGEQALAAKEA 105 (232)
T ss_dssp HCEE--EEE-CCSSGGGHHHHHHHHHHTTCCEEEE-ETTSTTH-HHHHHHHHHHCTTCEEEEECCC---SHHHHHHHHHH
T ss_pred CCEE--EEE-EcCCHHHHHHHHHHHHHCCCCEEEE-eCCCCCH-HHHHHHHHHhCCCCEEeECCcC---CHHHHHHHHHc
Confidence 3555 543 35566555555543 88888876 3566654 4566666654 34456777554 37889999999
Q ss_pred CCcEEEEccCCCcHHHHHHHHhCCCEEEEecCCHHHHHHHHHcCCCEEEEecCCCCcccCCCCchhhhHHHHHHHhCCCC
Q 020013 87 KVAVLQVSWGEYSEELVLEAHSAGVKVVPQVGSFDEARKAVNAGVDAIIVQGREAGGHVIGQDGLISLLPMVVDLIGDRD 166 (332)
Q Consensus 87 ~~~~I~~~~g~~~~~~i~~~~~~g~~v~~~v~s~~~a~~a~~~g~D~ivv~G~eaGGh~~~~~~~~~ll~~i~~~~~~~~ 166 (332)
|+++|... + ..+++++.+++.|+++++.+.|+.|+..|.+.|+|+|.+...+. .....+++.++..++ +
T Consensus 106 GA~fIvsP-~-~~~~vi~~~~~~gi~~ipGv~TptEi~~A~~~Gad~vK~FPa~~-------~gG~~~lkal~~p~p--~ 174 (232)
T 4e38_A 106 GATFVVSP-G-FNPNTVRACQEIGIDIVPGVNNPSTVEAALEMGLTTLKFFPAEA-------SGGISMVKSLVGPYG--D 174 (232)
T ss_dssp TCSEEECS-S-CCHHHHHHHHHHTCEEECEECSHHHHHHHHHTTCCEEEECSTTT-------TTHHHHHHHHHTTCT--T
T ss_pred CCCEEEeC-C-CCHHHHHHHHHcCCCEEcCCCCHHHHHHHHHcCCCEEEECcCcc-------ccCHHHHHHHHHHhc--C
Confidence 99999887 3 46789999999999999999999999999999999999844321 112467788777653 7
Q ss_pred CcEEeecCcCCHHHHHHHHHcCcceeeeccccccC
Q 020013 167 IPIIAAGGIVDARGYVAALSLGAQGICLGTRFVAS 201 (332)
Q Consensus 167 iPviaaGGI~~~~~v~~al~~GA~gV~~GT~fl~t 201 (332)
+|+++.||| +++|+.+++++|+.++++||.+...
T Consensus 175 ip~~ptGGI-~~~n~~~~l~aGa~~~vgGs~l~~~ 208 (232)
T 4e38_A 175 IRLMPTGGI-TPSNIDNYLAIPQVLACGGTWMVDK 208 (232)
T ss_dssp CEEEEBSSC-CTTTHHHHHTSTTBCCEEECGGGCH
T ss_pred CCeeeEcCC-CHHHHHHHHHCCCeEEEECchhcCh
Confidence 999999999 7999999999999999999887643
|
| >1jub_A Dihydroorotate dehydrogenase A; homodimer, alpha-beta barrel, flavoprotein, mutant enzyme, oxidoreductase; HET: FMN; 1.40A {Lactococcus lactis} SCOP: c.1.4.1 PDB: 1ovd_A* 1jue_A* 1dor_A* 2bsl_A* 2bx7_A* 2dor_A* 1jqv_A* 1jrb_A* 1jrc_A* 1jqx_A* | Back alignment and structure |
|---|
Probab=99.51 E-value=3.5e-13 Score=124.81 Aligned_cols=188 Identities=16% Similarity=0.117 Sum_probs=125.6
Q ss_pred CccceecCCCCCCCCcHHHHHHHHhCCCceeecCCC--------CCC--------------------HHHHHHHHHHHHh
Q 020013 9 FEYGIVQAPLGPDISGPELVAAVANAGGLGLLRAPD--------WEA--------------------PDYLRDLIRKTRS 60 (332)
Q Consensus 9 ~~~Pii~apM~~g~s~~~la~avs~aGglG~i~~~~--------~~~--------------------~e~~~~~i~~~r~ 60 (332)
++.||+.++.. .-.+.++.....+.| +|++..+. ... .+.+.+.+...++
T Consensus 11 l~npv~~Aag~-~~~~~~~~~~~~~~G-~g~i~~~~v~~~~~~gn~~pr~~~~~~~~in~~g~~~~g~~~~~~~~~~~~~ 88 (311)
T 1jub_A 11 FANPFMNASGV-HCMTIEDLEELKASQ-AGAYITKSSTLEKREGNPLPRYVDLELGSINSMGLPNLGFDYYLDYVLKNQK 88 (311)
T ss_dssp ESSSEEECTTS-SCSSHHHHHHHHHSS-CSCCBCCCBCSSCBCCSCSCCEEEETTEEEECCCCCBSCHHHHHHHHHHHHH
T ss_pred cCCCcEECCCC-CCCCHHHHHHHHHCC-CCEEEeCccCCcccCCCCCCcEEecccceeecCCCCCccHHHHHHHHHHHHH
Confidence 67899999742 123788887776654 56664321 001 3444444544443
Q ss_pred hc--CCcEEEEeecCCC--CHHHHHHHHhcCCc-EEEEccCCC-----------c---HHHHHHHHhC-CCEEEEecC--
Q 020013 61 LT--ERPFGVGVVLAFP--HNENIKAILSEKVA-VLQVSWGEY-----------S---EELVLEAHSA-GVKVVPQVG-- 118 (332)
Q Consensus 61 ~~--~~p~gvnl~~~~~--~~~~~~~~~~~~~~-~I~~~~g~~-----------~---~~~i~~~~~~-g~~v~~~v~-- 118 (332)
.. +.|+++|+..... ..+.++.+.+.++| +|.+++++| + .++++.+++. +++++.++.
T Consensus 89 ~~~~~~p~~~~i~g~~~~~~~~~a~~~~~~g~d~~iein~~~P~~~g~~~~g~~~e~~~~iv~~vr~~~~~Pv~vKi~~~ 168 (311)
T 1jub_A 89 ENAQEGPIFFSIAGMSAAENIAMLKKIQESDFSGITELNLSCPNVPGEPQLAYDFEATEKLLKEVFTFFTKPLGVKLPPY 168 (311)
T ss_dssp HTCSSSCCEEEECCSSHHHHHHHHHHHHHSCCCSEEEEESCCCCSSSCCCGGGCHHHHHHHHHHHTTTCCSCEEEEECCC
T ss_pred hcCCCCCEEEEcCCCCHHHHHHHHHHHHhcCCCeEEEEeccCCCCCCcccccCCHHHHHHHHHHHHHhcCCCEEEEECCC
Confidence 34 7899999986432 12344556678899 999987642 2 2455666654 678876654
Q ss_pred -CHHH----HHHHHHcCCCEEEEecCC--------------------CCcccCCCC---chhhhHHHHHHHhCCCCCcEE
Q 020013 119 -SFDE----ARKAVNAGVDAIIVQGRE--------------------AGGHVIGQD---GLISLLPMVVDLIGDRDIPII 170 (332)
Q Consensus 119 -s~~~----a~~a~~~g~D~ivv~G~e--------------------aGGh~~~~~---~~~~ll~~i~~~~~~~~iPvi 170 (332)
+.++ ++.+.++|+|+|++.+.. .||+. +.. ..+..++++++.++. ++|||
T Consensus 169 ~~~~~~~~~a~~~~~~G~d~i~v~~~~~~g~~i~~~~~~~~~~~~~~~gG~s-g~~~~~~~~~~i~~v~~~~~~-~ipvi 246 (311)
T 1jub_A 169 FDLVHFDIMAEILNQFPLTYVNSVNSIGNGLFIDPEAESVVIKPKDGFGGIG-GAYIKPTALANVRAFYTRLKP-EIQII 246 (311)
T ss_dssp CSHHHHHHHHHHHTTSCCCEEEECCCEEEEECEETTTTEESCSGGGGEEEEE-SGGGHHHHHHHHHHHHTTSCT-TSEEE
T ss_pred CCHHHHHHHHHHHHHcCCcEEEecCCCCcCceeccCCCCcccccCCCCCccc-cccccHHHHHHHHHHHHhcCC-CCCEE
Confidence 3333 567778899999987642 23443 221 236677777776532 69999
Q ss_pred eecCcCCHHHHHHHHHcCcceeeecccccc
Q 020013 171 AAGGIVDARGYVAALSLGAQGICLGTRFVA 200 (332)
Q Consensus 171 aaGGI~~~~~v~~al~~GA~gV~~GT~fl~ 200 (332)
+.|||.+++++.+++.+|||+|++||+|+.
T Consensus 247 ~~GGI~~~~da~~~l~~GAd~V~vg~~~l~ 276 (311)
T 1jub_A 247 GTGGIETGQDAFEHLLCGATMLQIGTALHK 276 (311)
T ss_dssp EESSCCSHHHHHHHHHHTCSEEEECHHHHH
T ss_pred EECCCCCHHHHHHHHHcCCCEEEEchHHHh
Confidence 999999999999999999999999999997
|
| >1wa3_A 2-keto-3-deoxy-6-phosphogluconate aldolase; KDPG, pyruvate, lyase; 1.9A {Thermotoga maritima} SCOP: c.1.10.1 PDB: 1vlw_A | Back alignment and structure |
|---|
Probab=99.51 E-value=4.8e-14 Score=122.73 Aligned_cols=178 Identities=19% Similarity=0.240 Sum_probs=126.4
Q ss_pred CcchhhcCCccceecCCCCCCCCcHHHHHHHH---hCCCceeecCCCCCCHHHHHHHHHHHHhhc--CCcEEEEeecCCC
Q 020013 1 MGWRGMLGFEYGIVQAPLGPDISGPELVAAVA---NAGGLGLLRAPDWEAPDYLRDLIRKTRSLT--ERPFGVGVVLAFP 75 (332)
Q Consensus 1 ~~~~~~l~~~~Pii~apM~~g~s~~~la~avs---~aGglG~i~~~~~~~~e~~~~~i~~~r~~~--~~p~gvnl~~~~~ 75 (332)
|.+.+.|. +.|+| |.-. ..+++.+..+. ..+|+.++.. .+.++.. .+.++++|+.. +.+++++...
T Consensus 1 ~~~~~~~~-~~~~i--~~~~-~~~~~~~~~~~~~~~~~G~~~iev-~~~~~~~-~~~i~~ir~~~~~~~~ig~~~v~--- 71 (205)
T 1wa3_A 1 MKMEELFK-KHKIV--AVLR-ANSVEEAKEKALAVFEGGVHLIEI-TFTVPDA-DTVIKELSFLKEKGAIIGAGTVT--- 71 (205)
T ss_dssp -CHHHHHH-HHCEE--EEEC-CSSHHHHHHHHHHHHHTTCCEEEE-ETTSTTH-HHHHHHTHHHHHTTCEEEEESCC---
T ss_pred CcHHHHHh-hCCEE--EEEe-cCCHHHHHHHHHHHHHCCCCEEEE-eCCChhH-HHHHHHHHHHCCCCcEEEecccC---
Confidence 56666665 56777 5432 33444333222 3466777743 2233332 34567777653 4667776433
Q ss_pred CHHHHHHHHhcCCcEEEEccCCCcHHHHHHHHhCCCEEEEecCCHHHHHHHHHcCCCEEEEecCCCCcccCCCCchhhhH
Q 020013 76 HNENIKAILSEKVAVLQVSWGEYSEELVLEAHSAGVKVVPQVGSFDEARKAVNAGVDAIIVQGREAGGHVIGQDGLISLL 155 (332)
Q Consensus 76 ~~~~~~~~~~~~~~~I~~~~g~~~~~~i~~~~~~g~~v~~~v~s~~~a~~a~~~g~D~ivv~G~eaGGh~~~~~~~~~ll 155 (332)
+.+.++.+.+.|+|+| ++.+ .+.++++.+++.|+++++.+.|..++..+.+.|+|+|.+...+. .....+
T Consensus 72 ~~~~~~~a~~~Gad~i-v~~~-~~~~~~~~~~~~g~~vi~g~~t~~e~~~a~~~Gad~vk~~~~~~--------~g~~~~ 141 (205)
T 1wa3_A 72 SVEQCRKAVESGAEFI-VSPH-LDEEISQFCKEKGVFYMPGVMTPTELVKAMKLGHTILKLFPGEV--------VGPQFV 141 (205)
T ss_dssp SHHHHHHHHHHTCSEE-ECSS-CCHHHHHHHHHHTCEEECEECSHHHHHHHHHTTCCEEEETTHHH--------HHHHHH
T ss_pred CHHHHHHHHHcCCCEE-EcCC-CCHHHHHHHHHcCCcEECCcCCHHHHHHHHHcCCCEEEEcCccc--------cCHHHH
Confidence 2456788888999999 6644 46788999999999999999999999999999999998743211 124566
Q ss_pred HHHHHHhCCCCCcEEeecCcCCHHHHHHHHHcCcceeeecccccc
Q 020013 156 PMVVDLIGDRDIPIIAAGGIVDARGYVAALSLGAQGICLGTRFVA 200 (332)
Q Consensus 156 ~~i~~~~~~~~iPviaaGGI~~~~~v~~al~~GA~gV~~GT~fl~ 200 (332)
+++++.++ ++||++.||| +.+++.+++.+||++|++||.++.
T Consensus 142 ~~l~~~~~--~~pvia~GGI-~~~~~~~~~~~Ga~~v~vGs~i~~ 183 (205)
T 1wa3_A 142 KAMKGPFP--NVKFVPTGGV-NLDNVCEWFKAGVLAVGVGSALVK 183 (205)
T ss_dssp HHHHTTCT--TCEEEEBSSC-CTTTHHHHHHHTCSCEEECHHHHC
T ss_pred HHHHHhCC--CCcEEEcCCC-CHHHHHHHHHCCCCEEEECccccC
Confidence 77766543 6999999999 689999999999999999999987
|
| >3o63_A Probable thiamine-phosphate pyrophosphorylase; thiamin biosynthesis, TIM barrel, transferase; 2.35A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=99.50 E-value=2.4e-13 Score=121.27 Aligned_cols=171 Identities=15% Similarity=0.172 Sum_probs=117.4
Q ss_pred HHHHHHHHhCCCceeecCCCC----------CCHHHHHHHHHHHHhhcCCcEEEEeecCCCCHHHHHHHHhcCCcEEEEc
Q 020013 25 PELVAAVANAGGLGLLRAPDW----------EAPDYLRDLIRKTRSLTERPFGVGVVLAFPHNENIKAILSEKVAVLQVS 94 (332)
Q Consensus 25 ~~la~avs~aGglG~i~~~~~----------~~~e~~~~~i~~~r~~~~~p~gvnl~~~~~~~~~~~~~~~~~~~~I~~~ 94 (332)
.+.+.++.+ ||+.++..... .+.+++.+..+++++++. .+++-++++ +.++.+.+.++|.|++.
T Consensus 46 ~~~~~~al~-~Gv~~vqlR~K~~~~~~~~~~l~~~~~~~~a~~l~~l~~-~~~~~liIn----d~~~lA~~~gAdGVHLg 119 (243)
T 3o63_A 46 AQFAEAALA-GGVDIIQLRDKGSPGELRFGPLQARDELAACEILADAAH-RYGALFAVN----DRADIARAAGADVLHLG 119 (243)
T ss_dssp HHHHHHHHH-TTCSEEEECCTTCHHHHHHCSCCHHHHHHHHHHHHHHHH-HTTCEEEEE----SCHHHHHHHTCSEEEEC
T ss_pred HHHHHHHHH-CCCCEEEEccCCCCccccccCCCHHHHHHHHHHHHHHHH-hhCCEEEEe----CHHHHHHHhCCCEEEec
Confidence 444444444 56777765211 224556666666666542 134445553 34567888899999998
Q ss_pred cCCCcHHHHHHHHhCCCEEEEecCCHHHHHHHHHcCCCEEEEecC-CCCcccCCCCchhhhHHHHHHHhCCCCCcEEeec
Q 020013 95 WGEYSEELVLEAHSAGVKVVPQVGSFDEARKAVNAGVDAIIVQGR-EAGGHVIGQDGLISLLPMVVDLIGDRDIPIIAAG 173 (332)
Q Consensus 95 ~g~~~~~~i~~~~~~g~~v~~~v~s~~~a~~a~~~g~D~ivv~G~-eaGGh~~~~~~~~~ll~~i~~~~~~~~iPviaaG 173 (332)
..+.+...++.+...+..+...++|++|++.+.+.|+|+|.+... ....+.+.....+..+.++.+... .++||++.|
T Consensus 120 ~~dl~~~~~r~~~~~~~~iG~S~ht~~Ea~~A~~~GaDyI~vgpvf~T~tK~~~~~~gl~~l~~~~~~~~-~~iPvvAiG 198 (243)
T 3o63_A 120 QRDLPVNVARQILAPDTLIGRSTHDPDQVAAAAAGDADYFCVGPCWPTPTKPGRAAPGLGLVRVAAELGG-DDKPWFAIG 198 (243)
T ss_dssp TTSSCHHHHHHHSCTTCEEEEEECSHHHHHHHHHSSCSEEEECCSSCCCC-----CCCHHHHHHHHTC----CCCEEEES
T ss_pred CCcCCHHHHHHhhCCCCEEEEeCCCHHHHHHHhhCCCCEEEEcCccCCCCCCCcchhhHHHHHHHHHhcc-CCCCEEEec
Confidence 766666666766666788889999999999999999999998442 122222111234667777765411 179999999
Q ss_pred CcCCHHHHHHHHHcCcceeeeccccccCcc
Q 020013 174 GIVDARGYVAALSLGAQGICLGTRFVASEE 203 (332)
Q Consensus 174 GI~~~~~v~~al~~GA~gV~~GT~fl~t~E 203 (332)
|| +++++.+++.+||+||.+||+|+.++.
T Consensus 199 GI-~~~ni~~~~~aGa~gvav~sai~~a~d 227 (243)
T 3o63_A 199 GI-NAQRLPAVLDAGARRIVVVRAITSADD 227 (243)
T ss_dssp SC-CTTTHHHHHHTTCCCEEESHHHHTCSS
T ss_pred CC-CHHHHHHHHHcCCCEEEEeHHHhCCCC
Confidence 99 899999999999999999999997654
|
| >1v5x_A PRA isomerase, phosphoribosylanthranilate isomerase; alpha-beta barrel, TRPF, riken structural genomics/proteomics initiative, RSGI; 2.00A {Thermus thermophilus} SCOP: c.1.2.4 | Back alignment and structure |
|---|
Probab=99.50 E-value=3.1e-13 Score=117.24 Aligned_cols=167 Identities=19% Similarity=0.206 Sum_probs=122.9
Q ss_pred CCCcHHHHHHHHhCC--Cceeec---CCCCCCHHHHHHHHHHHHhhcCCcEEEEeecCCCCHHHHHHHHhcCCcEEEEcc
Q 020013 21 DISGPELVAAVANAG--GLGLLR---APDWEAPDYLRDLIRKTRSLTERPFGVGVVLAFPHNENIKAILSEKVAVLQVSW 95 (332)
Q Consensus 21 g~s~~~la~avs~aG--glG~i~---~~~~~~~e~~~~~i~~~r~~~~~p~gvnl~~~~~~~~~~~~~~~~~~~~I~~~~ 95 (332)
|+++++.+.++.++| .+||+. ++++.+++..+++.+.++ ..+..|+++++.+.++..+.+.+.+.|+|++|
T Consensus 7 Git~~eda~~a~~~GaD~iGfif~~~SpR~V~~~~a~~i~~~~~---~~~~~VgVfvn~~~~~i~~~~~~~~ld~vQLH- 82 (203)
T 1v5x_A 7 GITRLEDALLAEALGAFALGFVLAPGSRRRIAPEAARAIGEALG---PFVVRVGVFRDQPPEEVLRLMEEARLQVAQLH- 82 (203)
T ss_dssp CCCCHHHHHHHHHHTCSEEEEECCTTCTTBCCHHHHHHHHHHSC---SSSEEEEEESSCCHHHHHHHHHHTTCSEEEEC-
T ss_pred CCCcHHHHHHHHHcCCCEEEEEecCCCCCcCCHHHHHHHHHhCC---CCCCEEEEEeCCCHHHHHHHHHhhCCCEEEEC-
Confidence 689999999999988 599995 345667887776655443 34567888998876667777788899999999
Q ss_pred CCCcHHHHHHHHhCCCEEEEec--CCHHHHHHHHHcCCCEEEEecCCCCcccCCCCchhhhHHHHHHHhCCCCCcEEeec
Q 020013 96 GEYSEELVLEAHSAGVKVVPQV--GSFDEARKAVNAGVDAIIVQGREAGGHVIGQDGLISLLPMVVDLIGDRDIPIIAAG 173 (332)
Q Consensus 96 g~~~~~~i~~~~~~g~~v~~~v--~s~~~a~~a~~~g~D~ivv~G~eaGGh~~~~~~~~~ll~~i~~~~~~~~iPviaaG 173 (332)
|++++++++.++ .++++|..+ .+..+. .+....+|+++++... ||. |....|.+++.+.. . +.|++.+|
T Consensus 83 G~e~~~~~~~l~-~~~~vika~~v~~~~~l-~~~~~~~d~~LlD~~~-gGt--G~~fdW~~l~~~~~-~---~~p~~LAG 153 (203)
T 1v5x_A 83 GEEPPEWAEAVG-RFYPVIKAFPLEGPARP-EWADYPAQALLLDGKR-PGS--GEAYPRAWAKPLLA-T---GRRVILAG 153 (203)
T ss_dssp SCCCHHHHHHHT-TTSCEEEEEECSSSCCG-GGGGSSCSEEEEECSS-TTS--CCCCCGGGGHHHHH-T---TSCEEECS
T ss_pred CCCCHHHHHHhc-cCCCEEEEEEcCChHhh-hhhhcCCCEEEEcCCC-CCC--CCccCHHHHHhhhc-c---CCcEEEEC
Confidence 666788888884 367777543 332222 2333348999998654 443 44456888876322 2 58999999
Q ss_pred CcCCHHHHHHHHHcCcceeeeccccccC
Q 020013 174 GIVDARGYVAALSLGAQGICLGTRFVAS 201 (332)
Q Consensus 174 GI~~~~~v~~al~~GA~gV~~GT~fl~t 201 (332)
|| +++|+.+++..++.||-+.|.+=.+
T Consensus 154 GL-~peNV~~ai~~~p~gVDvsSGvE~~ 180 (203)
T 1v5x_A 154 GI-APENLEEVLALRPYALDLASGVEEA 180 (203)
T ss_dssp SC-CSTTHHHHHHHCCSEEEESGGGEEE
T ss_pred CC-CHHHHHHHHhcCCCEEEeCCceecC
Confidence 99 8999999887799999999987643
|
| >1f76_A Dihydroorotate dehydrogenase; monomer, alpha-beta-barrel, FMN binding domain, orotate complex, oxidoreductase; HET: MSE FMN ORO; 2.50A {Bacteria} SCOP: c.1.4.1 | Back alignment and structure |
|---|
Probab=99.50 E-value=1.2e-13 Score=129.23 Aligned_cols=187 Identities=14% Similarity=0.213 Sum_probs=123.3
Q ss_pred CccceecCCCCCCCCcHHHHHHHHhCCCceeecCCC--------CC-------------------CHHHHHHHHHHHHhh
Q 020013 9 FEYGIVQAPLGPDISGPELVAAVANAGGLGLLRAPD--------WE-------------------APDYLRDLIRKTRSL 61 (332)
Q Consensus 9 ~~~Pii~apM~~g~s~~~la~avs~aGglG~i~~~~--------~~-------------------~~e~~~~~i~~~r~~ 61 (332)
++.||+.+++. ..+.++..+.++.| +|++..+. .. +.+.++..++.+++.
T Consensus 54 l~npi~~aag~--~~~~~~~~~~a~~G-~g~i~~~~~~~~~~~g~~~pr~~~~~~d~~~in~~g~~~~g~~~~~~~~~~~ 130 (336)
T 1f76_A 54 FKNPLGLAAGL--DKDGECIDALGAMG-FGSIEIGTVTPRPQPGNDKPRLFRLVDAEGLINRMGFNNLGVDNLVENVKKA 130 (336)
T ss_dssp ESSSEEECTTS--STTCCCHHHHHHTT-CSEEEEEEECSSCBCCSCSCCEEEETTTTEEEECCCCCBCCHHHHHHHHHHC
T ss_pred cCCCcEeCccc--CCcHHHHHHHHHcC-ccEEEeCCCCCCCCCCCCCcceeeccccceeeecCCCCCcCHHHHHHHHHhc
Confidence 56899999652 34556777776654 66552110 00 001124444555443
Q ss_pred -cCCcEEEEeecCCC------CHHHHHHHH--hcCCcEEEEccCCCc-------------HHHHHHHHhC----------
Q 020013 62 -TERPFGVGVVLAFP------HNENIKAIL--SEKVAVLQVSWGEYS-------------EELVLEAHSA---------- 109 (332)
Q Consensus 62 -~~~p~gvnl~~~~~------~~~~~~~~~--~~~~~~I~~~~g~~~-------------~~~i~~~~~~---------- 109 (332)
.+.|+++|+..+.. .+++.+.+. ..++|+|.+++++|. .++++.+++.
T Consensus 131 ~~~~~~~v~i~~~~~~~i~~~~~~~~~aa~~~~~g~d~iein~~sP~~~g~~~~~~~~~~~~il~~vr~~~~~~~~~~g~ 210 (336)
T 1f76_A 131 HYDGVLGINIGKNKDTPVEQGKDDYLICMEKIYAYAGYIAINISSPNTPGLRTLQYGEALDDLLTAIKNKQNDLQAMHHK 210 (336)
T ss_dssp CCCSEEEEEECCCTTSCGGGTHHHHHHHHHHHGGGCSEEEEECCCSSSTTGGGGGSHHHHHHHHHHHHHHHHHHHHHHTS
T ss_pred ccCCcEEEEecCCCCCcccccHHHHHHHHHHHhccCCEEEEEccCCCCCCcccccCHHHHHHHHHHHHHHHHhhhhcccc
Confidence 24689999977541 133333332 247999999987643 2566666543
Q ss_pred CCEEEEecC---C----HHHHHHHHHcCCCEEEEecC--------------CCCcccCCC---CchhhhHHHHHHHhCCC
Q 020013 110 GVKVVPQVG---S----FDEARKAVNAGVDAIIVQGR--------------EAGGHVIGQ---DGLISLLPMVVDLIGDR 165 (332)
Q Consensus 110 g~~v~~~v~---s----~~~a~~a~~~g~D~ivv~G~--------------eaGGh~~~~---~~~~~ll~~i~~~~~~~ 165 (332)
+++|+.+++ + .+.++.+.+.|+|+|++.|. +.||+. +. ...+.+++++++.++.
T Consensus 211 ~~Pv~vKi~~~~~~~~~~~~a~~l~~~Gvd~i~vsn~~~~~~~~~~~~~~~~~gg~~-g~~~~~~~~~~i~~i~~~~~~- 288 (336)
T 1f76_A 211 YVPIAVKIAPDLSEEELIQVADSLVRHNIDGVIATNTTLDRSLVQGMKNCDQTGGLS-GRPLQLKSTEIIRRLSLELNG- 288 (336)
T ss_dssp CCCEEEECCSCCCHHHHHHHHHHHHHTTCSEEEECCCBCCCTTSTTSTTTTCSSEEE-EGGGHHHHHHHHHHHHHHHTT-
T ss_pred cCceEEEecCCCCHHHHHHHHHHHHHcCCcEEEEeCCcccccccccccccccCCCcC-CchhHHHHHHHHHHHHHHhCC-
Confidence 688887765 2 23367788999999999764 234443 21 1235678888887742
Q ss_pred CCcEEeecCcCCHHHHHHHHHcCcceeeecccccc
Q 020013 166 DIPIIAAGGIVDARGYVAALSLGAQGICLGTRFVA 200 (332)
Q Consensus 166 ~iPviaaGGI~~~~~v~~al~~GA~gV~~GT~fl~ 200 (332)
++|||+.|||.+++++.+++++|||+|+|||+|+.
T Consensus 289 ~ipVi~~GGI~~~~da~~~l~~GAd~V~igr~~l~ 323 (336)
T 1f76_A 289 RLPIIGVGGIDSVIAAREKIAAGASLVQIYSGFIF 323 (336)
T ss_dssp SSCEEEESSCCSHHHHHHHHHHTCSEEEESHHHHH
T ss_pred CCCEEEECCCCCHHHHHHHHHCCCCEEEeeHHHHh
Confidence 69999999999999999999999999999999987
|
| >1p4c_A L(+)-mandelate dehydrogenase; TIM barrel, hydroxy acid oxidizing enzyme, oxidoreductase; HET: FMN MES; 1.35A {Pseudomonas putida} SCOP: c.1.4.1 PDB: 1huv_A* 1p5b_A* 3giy_A* 2a7p_A* 2a85_A* 2a7n_A* | Back alignment and structure |
|---|
Probab=99.48 E-value=2.6e-12 Score=122.09 Aligned_cols=96 Identities=22% Similarity=0.303 Sum_probs=78.4
Q ss_pred HHHHHHHh-CCCEEE-EecCCHHHHHHHHHcCCCEEEEecCCCCccc-CCCCchhhhHHHHHHHhCCCCCcEEeecCcCC
Q 020013 101 ELVLEAHS-AGVKVV-PQVGSFDEARKAVNAGVDAIIVQGREAGGHV-IGQDGLISLLPMVVDLIGDRDIPIIAAGGIVD 177 (332)
Q Consensus 101 ~~i~~~~~-~g~~v~-~~v~s~~~a~~a~~~g~D~ivv~G~eaGGh~-~~~~~~~~ll~~i~~~~~~~~iPviaaGGI~~ 177 (332)
+.++.+++ .+++++ ..+.++++++.+.++|+|+|++.|. ||.. ++..+++..++++++.+ ++|||++|||.+
T Consensus 215 ~~i~~i~~~~~~Pv~vkgv~t~e~a~~a~~aGad~I~vs~~--gg~~~d~~~~~~~~l~~v~~~~---~~pVia~GGI~~ 289 (380)
T 1p4c_A 215 EALRWLRDLWPHKLLVKGLLSAEDADRCIAEGADGVILSNH--GGRQLDCAISPMEVLAQSVAKT---GKPVLIDSGFRR 289 (380)
T ss_dssp HHHHHHHHHCCSEEEEEEECCHHHHHHHHHTTCSEEEECCG--GGTSCTTCCCGGGTHHHHHHHH---CSCEEECSSCCS
T ss_pred HHHHHHHHhcCCCEEEEecCcHHHHHHHHHcCCCEEEEcCC--CCCcCCCCcCHHHHHHHHHHHc---CCeEEEECCCCC
Confidence 45666655 577877 4578999999999999999999543 3322 12245788999999988 679999999999
Q ss_pred HHHHHHHHHcCcceeeeccccccC
Q 020013 178 ARGYVAALSLGAQGICLGTRFVAS 201 (332)
Q Consensus 178 ~~~v~~al~~GA~gV~~GT~fl~t 201 (332)
++|+.+++++|||+|++|+.|+..
T Consensus 290 ~~dv~kal~~GAdaV~iGr~~l~~ 313 (380)
T 1p4c_A 290 GSDIVKALALGAEAVLLGRATLYG 313 (380)
T ss_dssp HHHHHHHHHTTCSCEEESHHHHHH
T ss_pred HHHHHHHHHhCCcHhhehHHHHHH
Confidence 999999999999999999999854
|
| >2e6f_A Dihydroorotate dehydrogenase; chagas disease, pyrimidine biosynthesis, fumarate reductase, energy metabolism, redox homeostasis, flavoprotein; HET: FMN OXC; 1.26A {Trypanosoma cruzi} PDB: 2e6a_A* 2e6d_A* 2e68_A* 2djl_A* 2djx_A* 3c3n_A* 2b4g_A* 3c61_A* 3mhu_A* 3mjy_A* | Back alignment and structure |
|---|
Probab=99.48 E-value=2.7e-13 Score=125.67 Aligned_cols=187 Identities=12% Similarity=0.116 Sum_probs=124.7
Q ss_pred CccceecCCCCCCCCcHHHHHHHHhCCCceeecCCC--------------------------CCC--HHHHHHHHHHHHh
Q 020013 9 FEYGIVQAPLGPDISGPELVAAVANAGGLGLLRAPD--------------------------WEA--PDYLRDLIRKTRS 60 (332)
Q Consensus 9 ~~~Pii~apM~~g~s~~~la~avs~aGglG~i~~~~--------------------------~~~--~e~~~~~i~~~r~ 60 (332)
++.||+.+++.. -.+.+......+. |+|++..+. +.+ .+.+.+.++..+.
T Consensus 13 l~nPi~~Aag~~-~~~~~~~~~~~~~-G~g~v~~~~v~~~~~~gn~~pr~~~~~~~~in~~g~~~~g~~~~~~~~~~~~~ 90 (314)
T 2e6f_A 13 FANPFMNAAGVL-CSTEEDLRCMTAS-SSGALVSKSCTSAPRDGNPEPRYMAFPLGSINSMGLPNLGFDFYLKYASDLHD 90 (314)
T ss_dssp ESSSEEECTTSS-CSSHHHHHHHHHS-SCSCEECCCBCSSCBCCSCSCCEEEETTEEEECCCCCBSCHHHHHHHHHHTCC
T ss_pred cCCCcEECCCCC-CCCHHHHHHHHHC-CCCEEEeCccCCcccCCCCCCcEEecccceeecCCCCCcCHHHHHHHHHHHhh
Confidence 678999998641 2367777776554 456543211 111 2333333333323
Q ss_pred hcCCcEEEEeecCCCC--HHHHHHHHhcCCc---EEEEccCCCc--------------HHHHHHHHhC-CCEEEEecC--
Q 020013 61 LTERPFGVGVVLAFPH--NENIKAILSEKVA---VLQVSWGEYS--------------EELVLEAHSA-GVKVVPQVG-- 118 (332)
Q Consensus 61 ~~~~p~gvnl~~~~~~--~~~~~~~~~~~~~---~I~~~~g~~~--------------~~~i~~~~~~-g~~v~~~v~-- 118 (332)
..+.|+.+|+...... .+.++.+.+.++| +|.+++++|. .++++.+++. +++++.++.
T Consensus 91 ~~~~p~~~~i~g~~~~~~~~~a~~~~~~g~d~~~~iein~~~P~~~g~~~~g~~~~~~~~ii~~vr~~~~~Pv~vK~~~~ 170 (314)
T 2e6f_A 91 YSKKPLFLSISGLSVEENVAMVRRLAPVAQEKGVLLELNLSCPNVPGKPQVAYDFEAMRTYLQQVSLAYGLPFGVKMPPY 170 (314)
T ss_dssp TTTCCEEEEECCSSHHHHHHHHHHHHHHHHHHCCEEEEECCCCCSTTCCCGGGSHHHHHHHHHHHHHHHCSCEEEEECCC
T ss_pred cCCCcEEEEeCCCCHHHHHHHHHHHHHhCCCcCceEEEEcCCCCCCCchhhcCCHHHHHHHHHHHHHhcCCCEEEEECCC
Confidence 3578999999864421 2334455667889 9999876431 2456666654 778876654
Q ss_pred -CHHH----HHHHHHcC-CCEEEEecCC--------------------CCcccCCC---CchhhhHHHHHHHhCCCCCcE
Q 020013 119 -SFDE----ARKAVNAG-VDAIIVQGRE--------------------AGGHVIGQ---DGLISLLPMVVDLIGDRDIPI 169 (332)
Q Consensus 119 -s~~~----a~~a~~~g-~D~ivv~G~e--------------------aGGh~~~~---~~~~~ll~~i~~~~~~~~iPv 169 (332)
+.++ ++.+.++| +|+|++.+.. .||+. +. ...+..++++++.++ ++||
T Consensus 171 ~~~~~~~~~a~~~~~aG~~d~i~v~~~~~~~~~i~~~~~~~~~~~~~~~gG~s-g~~~~p~~~~~i~~v~~~~~--~ipv 247 (314)
T 2e6f_A 171 FDIAHFDTAAAVLNEFPLVKFVTCVNSVGNGLVIDAESESVVIKPKQGFGGLG-GKYILPTALANVNAFYRRCP--DKLV 247 (314)
T ss_dssp CCHHHHHHHHHHHHTCTTEEEEEECCCEEEEECEETTTTEESCCGGGGEEEEE-SGGGHHHHHHHHHHHHHHCT--TSEE
T ss_pred CCHHHHHHHHHHHHhcCCceEEEEeCCCCccccccCCCCCcccccCcCCCccC-cccccHHHHHHHHHHHHhcC--CCCE
Confidence 4445 66778999 9999986632 23443 22 123677888887762 7999
Q ss_pred EeecCcCCHHHHHHHHHcCcceeeecccccc
Q 020013 170 IAAGGIVDARGYVAALSLGAQGICLGTRFVA 200 (332)
Q Consensus 170 iaaGGI~~~~~v~~al~~GA~gV~~GT~fl~ 200 (332)
|+.|||.+++++.+++.+|||+|++||+|+.
T Consensus 248 i~~GGI~~~~da~~~l~~GAd~V~ig~~~l~ 278 (314)
T 2e6f_A 248 FGCGGVYSGEDAFLHILAGASMVQVGTALQE 278 (314)
T ss_dssp EEESSCCSHHHHHHHHHHTCSSEEECHHHHH
T ss_pred EEECCCCCHHHHHHHHHcCCCEEEEchhhHh
Confidence 9999999999999999999999999999997
|
| >4adt_A Pyridoxine biosynthetic enzyme PDX1 homologue, PU; transferase, pyridoxal 5-phosphate biosynthesis; 2.42A {Plasmodium berghei} PDB: 4adu_A* 4ads_A | Back alignment and structure |
|---|
Probab=99.47 E-value=2.5e-13 Score=124.24 Aligned_cols=189 Identities=18% Similarity=0.217 Sum_probs=135.0
Q ss_pred CCcHHHHHHHHhCCC--ceeec--------CC---CCCCHHHHHHHHHHHHhhcCCcEEEEeecCCCCHHHHHHHHhcCC
Q 020013 22 ISGPELVAAVANAGG--LGLLR--------AP---DWEAPDYLRDLIRKTRSLTERPFGVGVVLAFPHNENIKAILSEKV 88 (332)
Q Consensus 22 ~s~~~la~avs~aGg--lG~i~--------~~---~~~~~e~~~~~i~~~r~~~~~p~gvnl~~~~~~~~~~~~~~~~~~ 88 (332)
+.++++|..-.++|. +-++. .+ +..+++ .++++++..+.|+-+...... .+.++.+.+.|+
T Consensus 28 ~~~~e~A~~ye~~GA~~lsvLe~~~~Di~~~~g~~R~~~~~----~i~~i~~~v~iPvl~k~~i~~--ide~qil~aaGA 101 (297)
T 4adt_A 28 VKNVEQAKIAEKAGAIGVMILENIPSELRNTDGVARSVDPL----KIEEIRKCISINVLAKVRIGH--FVEAQILEELKV 101 (297)
T ss_dssp ESSHHHHHHHHHHTCSEEEECCCCC-----CCCCCCCCCHH----HHHHHHTTCCSEEEEEEETTC--HHHHHHHHHTTC
T ss_pred CCcHHHHHHHHHcCCCEEEEecCCCCcchhcCCcccCCCHH----HHHHHHHhcCCCEEEeccCCc--HHHHHHHHHcCC
Confidence 578899888878886 44441 10 011343 467777777889876543322 456777888999
Q ss_pred cEEEEccCCCcHHHHHHHHh--CCCEEEEecCCHHHHHHHHHcCCCEEEEecCCCCcc-------c--------------
Q 020013 89 AVLQVSWGEYSEELVLEAHS--AGVKVVPQVGSFDEARKAVNAGVDAIIVQGREAGGH-------V-------------- 145 (332)
Q Consensus 89 ~~I~~~~g~~~~~~i~~~~~--~g~~v~~~v~s~~~a~~a~~~g~D~ivv~G~eaGGh-------~-------------- 145 (332)
|+|..+.+..+.++++.+++ .+..+++.+++.++++++.+.|+|+|.++|....|. .
T Consensus 102 D~Id~s~~~~~~~li~~i~~~~~g~~vvv~v~~~~Ea~~a~~~Gad~I~v~g~~gTG~~~~~v~h~~~~~~eir~l~~~~ 181 (297)
T 4adt_A 102 DMLDESEVLTMADEYNHINKHKFKTPFVCGCTNLGEALRRISEGASMIRTKGEAGTGNIIEAIKHIRTVNNEIKYLCSLD 181 (297)
T ss_dssp SEEEEETTSCCSCSSCCCCGGGCSSCEEEEESSHHHHHHHHHHTCSEEEECCCTTSCCCHHHHHHHHHHHHHHHHHHHSC
T ss_pred CEEEcCCCCCHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhCCCCEEEECCCcCCCchHHHHHHHHHhhhhhhhhcccc
Confidence 99955544445567777766 578899999999999999999999999998733231 0
Q ss_pred -CC-------CCchhhhHHHHHHHhCCCCCcEE--eecCcCCHHHHHHHHHcCcceeeeccccccCccC-CCCHHHHHHH
Q 020013 146 -IG-------QDGLISLLPMVVDLIGDRDIPII--AAGGIVDARGYVAALSLGAQGICLGTRFVASEES-YAHPEYKRKL 214 (332)
Q Consensus 146 -~~-------~~~~~~ll~~i~~~~~~~~iPvi--aaGGI~~~~~v~~al~~GA~gV~~GT~fl~t~Es-~~~~~~k~~~ 214 (332)
.+ ...++.+++++.+.+ ++||+ +.|||++++++.+++.+|||+|++||+|+.++.. .....+++.+
T Consensus 182 ~d~L~t~~~~~~~~~~ll~~i~~~~---~iPVivvA~GGI~t~~dv~~~~~~GAdgVlVGsai~~a~dp~~~~~~l~~ai 258 (297)
T 4adt_A 182 ESEVYNFAKKLRAPIDLILLTRKLK---RLPVVNFAAGGIATPADAAMCMQLGMDGVFVGSGIFESENPQKMASSIVMAV 258 (297)
T ss_dssp TTTHHHHHHHHTCCHHHHHHHHHHT---SCSSEEEEESCCCSHHHHHHHHHTTCSCEEESHHHHTSSCHHHHHHHHHHHH
T ss_pred ccccccccccCCCCHHHHHHHHHhc---CCCeEEEecCCCCCHHHHHHHHHcCCCEEEEhHHHHcCCCHHHHHHHHHHHH
Confidence 01 023477888888876 67876 9999999999999999999999999999987532 1234455555
Q ss_pred hcCCC
Q 020013 215 VEMDK 219 (332)
Q Consensus 215 ~~~~~ 219 (332)
.+..+
T Consensus 259 ~~~~~ 263 (297)
T 4adt_A 259 SNFNN 263 (297)
T ss_dssp HTTTC
T ss_pred HhhCC
Confidence 55443
|
| >3qja_A IGPS, indole-3-glycerol phosphate synthase; structural genomics, T structural genomics consortium, TBSGC, lyase; 1.29A {Mycobacterium tuberculosis} PDB: 3t40_A* 3t44_A* 3t55_A* 3t78_A* 4fb7_A* | Back alignment and structure |
|---|
Probab=99.47 E-value=3.8e-12 Score=115.37 Aligned_cols=144 Identities=18% Similarity=0.199 Sum_probs=108.6
Q ss_pred HHHHHHHhhcCCcEEEEeecCCCCHHHHHHHHhcCCcEEEEccCCCcH----HHHHHHHhCCCEEEEecCCHHHHHHHHH
Q 020013 53 DLIRKTRSLTERPFGVGVVLAFPHNENIKAILSEKVAVLQVSWGEYSE----ELVLEAHSAGVKVVPQVGSFDEARKAVN 128 (332)
Q Consensus 53 ~~i~~~r~~~~~p~gvnl~~~~~~~~~~~~~~~~~~~~I~~~~g~~~~----~~i~~~~~~g~~v~~~v~s~~~a~~a~~ 128 (332)
+.++.+|+.++.|+-..=++. +..+++.+.+.|+|.|.+.....+. ++++.+++.|+.++..+++.+++..+.+
T Consensus 103 ~~l~~ir~~v~lPvl~kdfii--d~~qv~~A~~~GAD~VlLi~a~l~~~~l~~l~~~a~~lGl~~lvev~t~ee~~~A~~ 180 (272)
T 3qja_A 103 DDLDAVRASVSIPVLRKDFVV--QPYQIHEARAHGADMLLLIVAALEQSVLVSMLDRTESLGMTALVEVHTEQEADRALK 180 (272)
T ss_dssp HHHHHHHHHCSSCEEEESCCC--SHHHHHHHHHTTCSEEEEEGGGSCHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHH
T ss_pred HHHHHHHHhCCCCEEECcccc--CHHHHHHHHHcCCCEEEEecccCCHHHHHHHHHHHHHCCCcEEEEcCCHHHHHHHHH
Confidence 356667776778876543332 2346888999999999984322222 4456677889999999999999999999
Q ss_pred cCCCEEEEecCCCCcccCCCCchhhhHHHHHHHhCCCCCcEEeecCcCCHHHHHHHHHcCcceeeeccccccCcc
Q 020013 129 AGVDAIIVQGREAGGHVIGQDGLISLLPMVVDLIGDRDIPIIAAGGIVDARGYVAALSLGAQGICLGTRFVASEE 203 (332)
Q Consensus 129 ~g~D~ivv~G~eaGGh~~~~~~~~~ll~~i~~~~~~~~iPviaaGGI~~~~~v~~al~~GA~gV~~GT~fl~t~E 203 (332)
.|+|+|.+.+...... ...+..+.++.+.++. ++||++.|||.+++++.+++.+||+||.+||+|+.++.
T Consensus 181 ~Gad~IGv~~r~l~~~----~~dl~~~~~l~~~v~~-~~pvVaegGI~t~edv~~l~~~GadgvlVGsal~~a~d 250 (272)
T 3qja_A 181 AGAKVIGVNARDLMTL----DVDRDCFARIAPGLPS-SVIRIAESGVRGTADLLAYAGAGADAVLVGEGLVTSGD 250 (272)
T ss_dssp HTCSEEEEESBCTTTC----CBCTTHHHHHGGGSCT-TSEEEEESCCCSHHHHHHHHHTTCSEEEECHHHHTCSC
T ss_pred CCCCEEEECCCccccc----ccCHHHHHHHHHhCcc-cCEEEEECCCCCHHHHHHHHHcCCCEEEEcHHHhCCCC
Confidence 9999999976532211 1234556666665532 68999999999999999999999999999999998763
|
| >1vhc_A Putative KHG/KDPG aldolase; structural genomics, unknown function; HET: MSE; 1.89A {Haemophilus influenzae} SCOP: c.1.10.1 | Back alignment and structure |
|---|
Probab=99.42 E-value=1.7e-12 Score=114.45 Aligned_cols=157 Identities=18% Similarity=0.286 Sum_probs=117.2
Q ss_pred HHHHHHhCCCceeecCCCCCCHHHHHHHHHHHHhh-cCCcEEEEeecCCCCHHHHHHHHhcCCcEEEEccCCCcHHHHHH
Q 020013 27 LVAAVANAGGLGLLRAPDWEAPDYLRDLIRKTRSL-TERPFGVGVVLAFPHNENIKAILSEKVAVLQVSWGEYSEELVLE 105 (332)
Q Consensus 27 la~avs~aGglG~i~~~~~~~~e~~~~~i~~~r~~-~~~p~gvnl~~~~~~~~~~~~~~~~~~~~I~~~~g~~~~~~i~~ 105 (332)
++.++ -.||+.++... +.+++. .+.++++++. .+..++.+.++ ..+.++.+++.|+|+|+++ + ...++++.
T Consensus 34 ~~~al-~~gGv~~iel~-~k~~~~-~~~i~~l~~~~~~l~vgaGtvl---~~d~~~~A~~aGAd~v~~p-~-~d~~v~~~ 105 (224)
T 1vhc_A 34 LADTL-AKNGLSVAEIT-FRSEAA-ADAIRLLRANRPDFLIAAGTVL---TAEQVVLAKSSGADFVVTP-G-LNPKIVKL 105 (224)
T ss_dssp HHHHH-HHTTCCEEEEE-TTSTTH-HHHHHHHHHHCTTCEEEEESCC---SHHHHHHHHHHTCSEEECS-S-CCHHHHHH
T ss_pred HHHHH-HHcCCCEEEEe-ccCchH-HHHHHHHHHhCcCcEEeeCcEe---eHHHHHHHHHCCCCEEEEC-C-CCHHHHHH
Confidence 34433 34778888763 455543 3455655543 34556666544 3688999999999999876 3 35677888
Q ss_pred HHhCCCEEEEecCCHHHHHHHHHcCCCEEEEecCCCCcccCCCCchhhhHHHHHHHhCCCCCcEEeecCcCCHHHHHHHH
Q 020013 106 AHSAGVKVVPQVGSFDEARKAVNAGVDAIIVQGREAGGHVIGQDGLISLLPMVVDLIGDRDIPIIAAGGIVDARGYVAAL 185 (332)
Q Consensus 106 ~~~~g~~v~~~v~s~~~a~~a~~~g~D~ivv~G~eaGGh~~~~~~~~~ll~~i~~~~~~~~iPviaaGGI~~~~~v~~al 185 (332)
+++.|.++++.+.|+.++..+.+.|+|+|.+...+ .......+++++..++ ++|+++.||| +.+|+.+++
T Consensus 106 ar~~g~~~i~Gv~t~~e~~~A~~~Gad~vk~Fpa~-------~~gG~~~lk~l~~~~~--~ipvvaiGGI-~~~N~~~~l 175 (224)
T 1vhc_A 106 CQDLNFPITPGVNNPMAIEIALEMGISAVKFFPAE-------ASGGVKMIKALLGPYA--QLQIMPTGGI-GLHNIRDYL 175 (224)
T ss_dssp HHHTTCCEECEECSHHHHHHHHHTTCCEEEETTTT-------TTTHHHHHHHHHTTTT--TCEEEEBSSC-CTTTHHHHH
T ss_pred HHHhCCCEEeccCCHHHHHHHHHCCCCEEEEeeCc-------cccCHHHHHHHHhhCC--CCeEEEECCc-CHHHHHHHH
Confidence 88899998888999999999999999999993311 1112567777777664 6999999999 899999999
Q ss_pred Hc-CcceeeeccccccCc
Q 020013 186 SL-GAQGICLGTRFVASE 202 (332)
Q Consensus 186 ~~-GA~gV~~GT~fl~t~ 202 (332)
++ |+++|. ||.++..+
T Consensus 176 ~agga~~v~-gS~i~~~~ 192 (224)
T 1vhc_A 176 AIPNIVACG-GSWFVEKK 192 (224)
T ss_dssp TSTTBCCEE-ECGGGCHH
T ss_pred hcCCCEEEE-EchhcCcc
Confidence 99 999999 99987654
|
| >1h1y_A D-ribulose-5-phosphate 3-epimerase; oxidative pentose phosphate pathway, isomerase; 1.87A {Oryza sativa} SCOP: c.1.2.2 PDB: 1h1z_A | Back alignment and structure |
|---|
Probab=99.42 E-value=2e-12 Score=114.48 Aligned_cols=145 Identities=16% Similarity=0.215 Sum_probs=108.7
Q ss_pred HHHHHHHhhcCCcEEEEeecCCCCHHHHHHHHhcCCcEEEEccCC--Cc-HHHHHHHHhCCCEEEEec--CCHHHHHHHH
Q 020013 53 DLIRKTRSLTERPFGVGVVLAFPHNENIKAILSEKVAVLQVSWGE--YS-EELVLEAHSAGVKVVPQV--GSFDEARKAV 127 (332)
Q Consensus 53 ~~i~~~r~~~~~p~gvnl~~~~~~~~~~~~~~~~~~~~I~~~~g~--~~-~~~i~~~~~~g~~v~~~v--~s~~~a~~a~ 127 (332)
+.++++|+.++.|+.+.++++++ .++++.+.+.|+|.|++|.+. .+ .+.++.+++.|++++..+ ++..+....+
T Consensus 54 ~~~~~lr~~~~~~~~v~lmv~d~-~~~i~~~~~agad~v~vH~~~~~~~~~~~~~~i~~~g~~igv~~~p~t~~e~~~~~ 132 (228)
T 1h1y_A 54 PVIQSLRKHTKAYLDCHLMVTNP-SDYVEPLAKAGASGFTFHIEVSRDNWQELIQSIKAKGMRPGVSLRPGTPVEEVFPL 132 (228)
T ss_dssp HHHHHHHTTCCSEEEEEEESSCG-GGGHHHHHHHTCSEEEEEGGGCTTTHHHHHHHHHHTTCEEEEEECTTSCGGGGHHH
T ss_pred HHHHHHHhhcCCcEEEEEEecCH-HHHHHHHHHcCCCEEEECCCCcccHHHHHHHHHHHcCCCEEEEEeCCCCHHHHHHH
Confidence 45677777777799999999776 567899999999999999643 34 567888899999988777 4444444444
Q ss_pred Hc---CCCEEEEecCCCC--cccCCCCchhhhHHHHHHHhCCCCCcEEeecCcCCHHHHHHHHHcCcceeeeccccccCc
Q 020013 128 NA---GVDAIIVQGREAG--GHVIGQDGLISLLPMVVDLIGDRDIPIIAAGGIVDARGYVAALSLGAQGICLGTRFVASE 202 (332)
Q Consensus 128 ~~---g~D~ivv~G~eaG--Gh~~~~~~~~~ll~~i~~~~~~~~iPviaaGGI~~~~~v~~al~~GA~gV~~GT~fl~t~ 202 (332)
.. ++|+|.+.....| |.. .....+..+.++++... ++||+++||| +.+++.+++..|||++++||+++..+
T Consensus 133 ~~~~~~~d~vl~~sv~pg~~g~~-~~~~~l~~i~~~~~~~~--~~pi~v~GGI-~~~ni~~~~~aGaD~vvvGsai~~~~ 208 (228)
T 1h1y_A 133 VEAENPVELVLVMTVEPGFGGQK-FMPEMMEKVRALRKKYP--SLDIEVDGGL-GPSTIDVAASAGANCIVAGSSIFGAA 208 (228)
T ss_dssp HHSSSCCSEEEEESSCTTCSSCC-CCGGGHHHHHHHHHHCT--TSEEEEESSC-STTTHHHHHHHTCCEEEESHHHHTSS
T ss_pred HhcCCCCCEEEEEeecCCCCccc-CCHHHHHHHHHHHHhcC--CCCEEEECCc-CHHHHHHHHHcCCCEEEECHHHHCCC
Confidence 44 9999999655433 221 12234556666666542 6899999999 67999999999999999999998764
|
| >1wbh_A KHG/KDPG aldolase; lyase; 1.55A {Escherichia coli} SCOP: c.1.10.1 PDB: 2c0a_A 1wau_A 1eua_A 1eun_A 1fq0_A* 1fwr_A* | Back alignment and structure |
|---|
Probab=99.42 E-value=2.7e-12 Score=112.39 Aligned_cols=157 Identities=20% Similarity=0.331 Sum_probs=117.1
Q ss_pred HHHHHHhCCCceeecCCCCCCHHHHHHHHHHHHhh-cCCcEEEEeecCCCCHHHHHHHHhcCCcEEEEccCCCcHHHHHH
Q 020013 27 LVAAVANAGGLGLLRAPDWEAPDYLRDLIRKTRSL-TERPFGVGVVLAFPHNENIKAILSEKVAVLQVSWGEYSEELVLE 105 (332)
Q Consensus 27 la~avs~aGglG~i~~~~~~~~e~~~~~i~~~r~~-~~~p~gvnl~~~~~~~~~~~~~~~~~~~~I~~~~g~~~~~~i~~ 105 (332)
++.++ -.||+.++... +.++.. .+.++++++. .+..++.+.++ ..+.++.+++.|+|+|+++ + ...++.+.
T Consensus 33 ~~~al-~~gGv~~iel~-~k~~~~-~~~i~~l~~~~~~~~vgagtvi---~~d~~~~A~~aGAd~v~~p-~-~d~~v~~~ 104 (214)
T 1wbh_A 33 MAKAL-VAGGVRVLNVT-LRTECA-VDAIRAIAKEVPEAIVGAGTVL---NPQQLAEVTEAGAQFAISP-G-LTEPLLKA 104 (214)
T ss_dssp HHHHH-HHTTCCEEEEE-SCSTTH-HHHHHHHHHHCTTSEEEEESCC---SHHHHHHHHHHTCSCEEES-S-CCHHHHHH
T ss_pred HHHHH-HHcCCCEEEEe-CCChhH-HHHHHHHHHHCcCCEEeeCEEE---EHHHHHHHHHcCCCEEEcC-C-CCHHHHHH
Confidence 44444 34778888763 455544 3455655443 34456666544 2688999999999999887 3 46778888
Q ss_pred HHhCCCEEEEecCCHHHHHHHHHcCCCEEEEecCCCCcccCCCCchhhhHHHHHHHhCCCCCcEEeecCcCCHHHHHHHH
Q 020013 106 AHSAGVKVVPQVGSFDEARKAVNAGVDAIIVQGREAGGHVIGQDGLISLLPMVVDLIGDRDIPIIAAGGIVDARGYVAAL 185 (332)
Q Consensus 106 ~~~~g~~v~~~v~s~~~a~~a~~~g~D~ivv~G~eaGGh~~~~~~~~~ll~~i~~~~~~~~iPviaaGGI~~~~~v~~al 185 (332)
.+..|+.+++.+.|++|+..+.+.|+|+|.+...+ .......+++++..++ ++|+++.||| +.+|+.+++
T Consensus 105 ~~~~g~~~i~G~~t~~e~~~A~~~Gad~v~~Fpa~-------~~gG~~~lk~i~~~~~--~ipvvaiGGI-~~~n~~~~l 174 (214)
T 1wbh_A 105 ATEGTIPLIPGISTVSELMLGMDYGLKEFKFFPAE-------ANGGVKALQAIAGPFS--QVRFCPTGGI-SPANYRDYL 174 (214)
T ss_dssp HHHSSSCEEEEESSHHHHHHHHHTTCCEEEETTTT-------TTTHHHHHHHHHTTCT--TCEEEEBSSC-CTTTHHHHH
T ss_pred HHHhCCCEEEecCCHHHHHHHHHCCCCEEEEecCc-------cccCHHHHHHHhhhCC--CCeEEEECCC-CHHHHHHHH
Confidence 88999999988999999999999999999983311 1112566777776654 6999999999 899999999
Q ss_pred Hc-CcceeeeccccccCc
Q 020013 186 SL-GAQGICLGTRFVASE 202 (332)
Q Consensus 186 ~~-GA~gV~~GT~fl~t~ 202 (332)
++ |+++|. ||.++..+
T Consensus 175 ~agg~~~v~-gS~i~~~~ 191 (214)
T 1wbh_A 175 ALKSVLCIG-GSWLVPAD 191 (214)
T ss_dssp TSTTBSCEE-EGGGSCHH
T ss_pred hcCCCeEEE-eccccChh
Confidence 99 999999 99987654
|
| >1tqj_A Ribulose-phosphate 3-epimerase; beta-alpha barrel epimerase, isomerase; 1.60A {Synechocystis SP} SCOP: c.1.2.2 | Back alignment and structure |
|---|
Probab=99.42 E-value=1e-12 Score=116.52 Aligned_cols=147 Identities=15% Similarity=0.196 Sum_probs=114.4
Q ss_pred HHHHHHHhhcCCcEEEEeecCCCCHHHHHHHHhcCCcEEEEccC----CCcHHHHHHHHhCCCEEEEec--CCHHHHHHH
Q 020013 53 DLIRKTRSLTERPFGVGVVLAFPHNENIKAILSEKVAVLQVSWG----EYSEELVLEAHSAGVKVVPQV--GSFDEARKA 126 (332)
Q Consensus 53 ~~i~~~r~~~~~p~gvnl~~~~~~~~~~~~~~~~~~~~I~~~~g----~~~~~~i~~~~~~g~~v~~~v--~s~~~a~~a 126 (332)
+.++++|+.++.|+.+.++++++ +++++.+.+.|+|.|++|.. +.+.+.++.+++.|+++...+ +|+.+....
T Consensus 52 ~~v~~lr~~~~~~~~vhlmv~dp-~~~i~~~~~aGadgv~vh~e~~~~~~~~~~~~~i~~~g~~~gv~~~p~t~~e~~~~ 130 (230)
T 1tqj_A 52 LIVDAIRPLTKKTLDVHLMIVEP-EKYVEDFAKAGADIISVHVEHNASPHLHRTLCQIRELGKKAGAVLNPSTPLDFLEY 130 (230)
T ss_dssp HHHHHHGGGCCSEEEEEEESSSG-GGTHHHHHHHTCSEEEEECSTTTCTTHHHHHHHHHHTTCEEEEEECTTCCGGGGTT
T ss_pred HHHHHHHhhcCCcEEEEEEccCH-HHHHHHHHHcCCCEEEECcccccchhHHHHHHHHHHcCCcEEEEEeCCCcHHHHHH
Confidence 56788888888899999999776 56889999999999999976 456688899999999998877 566666666
Q ss_pred HHcCCCEEEEecCCCC--cccCCCCchhhhHHHHHHHhC--CCCCcEEeecCcCCHHHHHHHHHcCcceeeeccccccCc
Q 020013 127 VNAGVDAIIVQGREAG--GHVIGQDGLISLLPMVVDLIG--DRDIPIIAAGGIVDARGYVAALSLGAQGICLGTRFVASE 202 (332)
Q Consensus 127 ~~~g~D~ivv~G~eaG--Gh~~~~~~~~~ll~~i~~~~~--~~~iPviaaGGI~~~~~v~~al~~GA~gV~~GT~fl~t~ 202 (332)
+..++|+|.+-....| |.. .....+..+.++++..+ +.++||.+.||| +.+++.++..+|||++++||+++.++
T Consensus 131 ~~~~~D~v~~msv~pg~ggq~-~~~~~~~~i~~lr~~~~~~~~~~~I~v~GGI-~~~~~~~~~~aGad~vvvGSai~~a~ 208 (230)
T 1tqj_A 131 VLPVCDLILIMSVNPGFGGQS-FIPEVLPKIRALRQMCDERGLDPWIEVDGGL-KPNNTWQVLEAGANAIVAGSAVFNAP 208 (230)
T ss_dssp TGGGCSEEEEESSCC----CC-CCGGGHHHHHHHHHHHHHHTCCCEEEEESSC-CTTTTHHHHHHTCCEEEESHHHHTSS
T ss_pred HHhcCCEEEEEEeccccCCcc-CcHHHHHHHHHHHHHHHhcCCCCcEEEECCc-CHHHHHHHHHcCCCEEEECHHHHCCC
Confidence 6679998877544333 322 22345667777776542 125899999999 56999999999999999999999754
|
| >2nv1_A Pyridoxal biosynthesis lyase PDXS; (beta/alpha)8-barrel, synthase; 2.08A {Bacillus subtilis} PDB: 2nv2_A* 1znn_A | Back alignment and structure |
|---|
Probab=99.42 E-value=1.8e-13 Score=126.51 Aligned_cols=210 Identities=15% Similarity=0.209 Sum_probs=133.6
Q ss_pred CCCcHHHHHHHHhCCCceeecC-----------C--CCCCHHHHHHHHHHHHhhcCCcEEEEeecCCCCHHHHHHHHhcC
Q 020013 21 DISGPELVAAVANAGGLGLLRA-----------P--DWEAPDYLRDLIRKTRSLTERPFGVGVVLAFPHNENIKAILSEK 87 (332)
Q Consensus 21 g~s~~~la~avs~aGglG~i~~-----------~--~~~~~e~~~~~i~~~r~~~~~p~gvnl~~~~~~~~~~~~~~~~~ 87 (332)
+.+..+++.++.++|.-.+... + ...+++. ++++++.++.|+-++..... .+.++.+.+.|
T Consensus 27 ~~~~~~~a~~~~~~Ga~~I~~l~p~~~~~~~~~G~~~~~~~~~----i~~I~~~~~iPv~~k~r~g~--~~~~~~~~a~G 100 (305)
T 2nv1_A 27 DVINAEQAKIAEEAGAVAVMALERVPADIRAAGGVARMADPTI----VEEVMNAVSIPVMAKARIGH--IVEARVLEAMG 100 (305)
T ss_dssp EESSHHHHHHHHHTTCSEEEECCC-------CCCCCCCCCHHH----HHHHHHHCSSCEEEEECTTC--HHHHHHHHHHT
T ss_pred cCCHHHHHHHHHHcCCCEEEEcCCCcchhhhccCcccCCCHHH----HHHHHHhCCCCEEecccccc--hHHHHHHHHCC
Confidence 3567788998888886555221 0 1123444 44455556788887765422 45677888899
Q ss_pred CcEEEEccCCCcHHHHHH--HHhCCCEEEEecCCHHHHHHHHHcCCCEEEEecCCCC--------ccc------------
Q 020013 88 VAVLQVSWGEYSEELVLE--AHSAGVKVVPQVGSFDEARKAVNAGVDAIIVQGREAG--------GHV------------ 145 (332)
Q Consensus 88 ~~~I~~~~g~~~~~~i~~--~~~~g~~v~~~v~s~~~a~~a~~~g~D~ivv~G~eaG--------Gh~------------ 145 (332)
+|.|......++.++.+. .++.|++++..+.+++++.++.+.|+|+|.++| ++| +|.
T Consensus 101 Ad~V~~~~~l~~~~~~~~i~~~~~g~~v~~~~~~~~e~~~a~~~Gad~V~~~G-~~g~g~~~~~~~h~rt~~~~i~~l~g 179 (305)
T 2nv1_A 101 VDYIDESEVLTPADEEFHLNKNEYTVPFVCGCRDLGEATRRIAEGASMLRTKG-EPGTGNIVEAVRHMRKVNAQVRKVVA 179 (305)
T ss_dssp CSEEEECTTSCCSCSSCCCCGGGCSSCEEEEESSHHHHHHHHHTTCSEEEECC-CTTSCCTHHHHHHHHHHHHHHHHHHH
T ss_pred CCEEEEeccCCHHHHHHHHHHhccCCcEEEEeCCHHHHHHHHHCCCCEEEecc-ccCccchHHHHhhhhhhhccchhhcc
Confidence 999973311122222111 235689999999999999999999999999988 444 131
Q ss_pred ---CC-------CCchhhhHHHHHHHhCCCCCcEE--eecCcCCHHHHHHHHHcCcceeeeccccccCccC-CCCHHHHH
Q 020013 146 ---IG-------QDGLISLLPMVVDLIGDRDIPII--AAGGIVDARGYVAALSLGAQGICLGTRFVASEES-YAHPEYKR 212 (332)
Q Consensus 146 ---~~-------~~~~~~ll~~i~~~~~~~~iPvi--aaGGI~~~~~v~~al~~GA~gV~~GT~fl~t~Es-~~~~~~k~ 212 (332)
.+ ....+.+++++.+.. ++||+ +.|||.+++++.+++.+|||+|++||+|+.+.+. .....+++
T Consensus 180 i~~~~~~~~~~~~~~~~~~i~~i~~~~---~iPvi~~a~GGI~~~~d~~~~~~~GadgV~vGsai~~~~~p~~~~~~l~~ 256 (305)
T 2nv1_A 180 MSEDELMTEAKNLGAPYELLLQIKKDG---KLPVVNFAAGGVATPADAALMMQLGADGVFVGSGIFKSDNPAKFAKAIVE 256 (305)
T ss_dssp SCGGGHHHHHHHHTCCHHHHHHHHHHT---SCSSCEEBCSCCCSHHHHHHHHHTTCSCEEECGGGGGSSCHHHHHHHHHH
T ss_pred ccchhhhcccccccccHHHHHHHHHhc---CCCEEEEeccCCCCHHHHHHHHHcCCCEEEEcHHHHcCCCHHHHHHHHHH
Confidence 00 112366788887765 79998 9999999999999999999999999999987653 24566777
Q ss_pred HHhcCCCceEEEEecccCCCCCCceeecCh
Q 020013 213 KLVEMDKTEYTDVFGRARWPGAPHRVLQTP 242 (332)
Q Consensus 213 ~~~~~~~t~~t~~~~~~~~~g~~~R~l~n~ 242 (332)
.+.+..+.+....++ ...|.+.|++...
T Consensus 257 ~~~~~~~~~~~~~~~--~~~g~~~~~~~~~ 284 (305)
T 2nv1_A 257 ATTHFTDYKLIAELS--KELGTAMKGIEIS 284 (305)
T ss_dssp HHHTTTCHHHHHHHT--SCC----------
T ss_pred HHHHhcChhhHHHHH--HHhhhhhcCCChh
Confidence 777655443111112 2247777887633
|
| >1gte_A Dihydropyrimidine dehydrogenase; electron transfer, flavin, iron-sulfur clusters, pyrimidine catabolism, 5-fluorouracil degradation, oxidoreductase; HET: FMN FAD; 1.65A {Sus scrofa} SCOP: a.1.2.2 c.1.4.1 c.3.1.1 c.4.1.1 d.58.1.5 PDB: 1gt8_A* 1gth_A* 1h7w_A* 1h7x_A* | Back alignment and structure |
|---|
Probab=99.42 E-value=3.8e-12 Score=135.32 Aligned_cols=191 Identities=15% Similarity=0.199 Sum_probs=130.3
Q ss_pred hhcC--CccceecCCCCCCCCcHHHHHHHHhCCCceeecCC----------C----------------------------
Q 020013 5 GMLG--FEYGIVQAPLGPDISGPELVAAVANAGGLGLLRAP----------D---------------------------- 44 (332)
Q Consensus 5 ~~l~--~~~Pii~apM~~g~s~~~la~avs~aGglG~i~~~----------~---------------------------- 44 (332)
+++| ++.||+.+||. +..+.+++.+..++| +|++..+ +
T Consensus 536 ~~~G~~~~nPv~lAa~~-~~~~~~~~~~~~~~g-~G~vv~~t~~~~~~~~gn~~pr~~~~~~~g~~~~~~~~~~~n~e~~ 613 (1025)
T 1gte_A 536 EMAGLKFINPFGLASAA-PTTSSSMIRRAFEAG-WGFALTKTFSLDKDIVTNVSPRIVRGTTSGPMYGPGQSSFLNIELI 613 (1025)
T ss_dssp EETTEEESSSEEECSSG-GGSSHHHHHHHHHHT-CSEEECCCBCCGGGCCCCCSSCEEECCTTCSCCSSCCSCEEECCCS
T ss_pred eeccccccCcccccCCC-CCCCHHHHHHHHHCC-cCeEEeceecccccccCCCCccEEeccccccccCCchhheeeeccc
Confidence 3455 45899999997 467788888777664 3444211 0
Q ss_pred -CCCHHHHHHHHHHHHhhc-CCcEEEEeecCCCC---HHHHHHHHhcCCcEEEEccCCCc------------------HH
Q 020013 45 -WEAPDYLRDLIRKTRSLT-ERPFGVGVVLAFPH---NENIKAILSEKVAVLQVSWGEYS------------------EE 101 (332)
Q Consensus 45 -~~~~e~~~~~i~~~r~~~-~~p~gvnl~~~~~~---~~~~~~~~~~~~~~I~~~~g~~~------------------~~ 101 (332)
....+.+.+.+.++++.. +.|+.+|++..... .+.++.+.+.++|+|.+++++|. .+
T Consensus 614 ~~~~~~~~~~~i~~~~~~~~~~~~i~~i~~g~~~~~~~~~a~~~~~~g~d~iein~~~P~~~~~~~~G~~~~~~~~~~~~ 693 (1025)
T 1gte_A 614 SEKTAAYWCQSVTELKADFPDNIVIASIMCSYNKNDWMELSRKAEASGADALELNLSCPHGMGERGMGLACGQDPELVRN 693 (1025)
T ss_dssp CSSCHHHHHHHHHHHHHHCTTSEEEEEECCCSCHHHHHHHHHHHHHTTCSEEEEECCCBCCCC-----SBGGGCHHHHHH
T ss_pred cchhHHHHHHHHHHHHhcCCCCCeEEEecCCCCHHHHHHHHHHHHhcCCCEEEEECCCCCCCCCCCcccccccCHHHHHH
Confidence 012334445566666544 68999999654322 23345556789999999876531 13
Q ss_pred HHHHHHhC-CCEEEEecC----C-HHHHHHHHHcCCCEEEEecC-----------------------CCCcccCCCCc--
Q 020013 102 LVLEAHSA-GVKVVPQVG----S-FDEARKAVNAGVDAIIVQGR-----------------------EAGGHVIGQDG-- 150 (332)
Q Consensus 102 ~i~~~~~~-g~~v~~~v~----s-~~~a~~a~~~g~D~ivv~G~-----------------------eaGGh~~~~~~-- 150 (332)
+++.+++. +++|+.++. + .+.++.+.+.|+|+|++.+. ..||+. +...
T Consensus 694 iv~~v~~~~~~Pv~vK~~~~~~~~~~~a~~~~~~G~d~i~v~Nt~~~~~~~~~~~~~~~~~~~~gr~~~gg~s-g~~~~~ 772 (1025)
T 1gte_A 694 ICRWVRQAVQIPFFAKLTPNVTDIVSIARAAKEGGADGVTATNTVSGLMGLKADGTPWPAVGAGKRTTYGGVS-GTAIRP 772 (1025)
T ss_dssp HHHHHHHHCSSCEEEEECSCSSCHHHHHHHHHHHTCSEEEECCCEEECCCBCTTSCBSSCBTTTTBBCCEEEE-SGGGHH
T ss_pred HHHHHHHhhCCceEEEeCCChHHHHHHHHHHHHcCCCEEEEeccccccccccccccccccccccccccCCCCC-cccchh
Confidence 55666654 788886553 2 34578888999999999431 233433 2211
Q ss_pred -hhhhHHHHHHHhCCCCCcEEeecCcCCHHHHHHHHHcCcceeeecccccc
Q 020013 151 -LISLLPMVVDLIGDRDIPIIAAGGIVDARGYVAALSLGAQGICLGTRFVA 200 (332)
Q Consensus 151 -~~~ll~~i~~~~~~~~iPviaaGGI~~~~~v~~al~~GA~gV~~GT~fl~ 200 (332)
.+.+++++++.++ ++|||+.|||.+++++.++|++|||+|++|++|+.
T Consensus 773 ~~~~~v~~v~~~~~--~ipvi~~GGI~s~~da~~~l~~Ga~~v~vg~~~l~ 821 (1025)
T 1gte_A 773 IALRAVTTIARALP--GFPILATGGIDSAESGLQFLHSGASVLQVCSAVQN 821 (1025)
T ss_dssp HHHHHHHHHHHHST--TCCEEEESSCCSHHHHHHHHHTTCSEEEESHHHHT
T ss_pred HHHHHHHHHHHHcC--CCCEEEecCcCCHHHHHHHHHcCCCEEEEeecccc
Confidence 1467888888763 69999999999999999999999999999999997
|
| >3tsm_A IGPS, indole-3-glycerol phosphate synthase; structural genomics, ssgcid, seattle structural GE center for infectious disease, lyase; 2.15A {Brucella melitensis} SCOP: c.1.2.0 | Back alignment and structure |
|---|
Probab=99.41 E-value=1.7e-11 Score=110.70 Aligned_cols=168 Identities=16% Similarity=0.200 Sum_probs=122.2
Q ss_pred HHHHHHHHhCCC--ceeecCCCC--CCHHHHHHHHHHHHhhcCCcEEEEeecCCCCHHHHHHHHhcCCcEEEEccCCCcH
Q 020013 25 PELVAAVANAGG--LGLLRAPDW--EAPDYLRDLIRKTRSLTERPFGVGVVLAFPHNENIKAILSEKVAVLQVSWGEYSE 100 (332)
Q Consensus 25 ~~la~avs~aGg--lG~i~~~~~--~~~e~~~~~i~~~r~~~~~p~gvnl~~~~~~~~~~~~~~~~~~~~I~~~~g~~~~ 100 (332)
.++|.+..++|. +-++....+ .+++. ++.+|+.++.|+-.+=|+.++ .++..+.+.|+|.|.+.....+.
T Consensus 82 ~~~A~~y~~~GA~~IsVltd~~~f~Gs~~~----L~~ir~~v~lPVl~Kdfi~d~--~qi~ea~~~GAD~VlLi~a~L~~ 155 (272)
T 3tsm_A 82 PALAKAYEEGGAACLSVLTDTPSFQGAPEF----LTAARQACSLPALRKDFLFDP--YQVYEARSWGADCILIIMASVDD 155 (272)
T ss_dssp HHHHHHHHHTTCSEEEEECCSTTTCCCHHH----HHHHHHTSSSCEEEESCCCST--HHHHHHHHTTCSEEEEETTTSCH
T ss_pred HHHHHHHHHCCCCEEEEeccccccCCCHHH----HHHHHHhcCCCEEECCccCCH--HHHHHHHHcCCCEEEEcccccCH
Confidence 467777766664 444433222 24443 466677778888666554433 46778889999999886433333
Q ss_pred ----HHHHHHHhCCCEEEEecCCHHHHHHHHHcCCCEEEEecCCCCcccCCCCchhhhHHHHHHHhCCCCCcEEeecCcC
Q 020013 101 ----ELVLEAHSAGVKVVPQVGSFDEARKAVNAGVDAIIVQGREAGGHVIGQDGLISLLPMVVDLIGDRDIPIIAAGGIV 176 (332)
Q Consensus 101 ----~~i~~~~~~g~~v~~~v~s~~~a~~a~~~g~D~ivv~G~eaGGh~~~~~~~~~ll~~i~~~~~~~~iPviaaGGI~ 176 (332)
++++.+++.|+.++..|++.+|+..+.+.|+|+|-+.++.. ++.. ..+....++.+.++. ++|+|+.|||.
T Consensus 156 ~~l~~l~~~a~~lGl~~lvevh~~eEl~~A~~~ga~iIGinnr~l--~t~~--~dl~~~~~L~~~ip~-~~~vIaesGI~ 230 (272)
T 3tsm_A 156 DLAKELEDTAFALGMDALIEVHDEAEMERALKLSSRLLGVNNRNL--RSFE--VNLAVSERLAKMAPS-DRLLVGESGIF 230 (272)
T ss_dssp HHHHHHHHHHHHTTCEEEEEECSHHHHHHHTTSCCSEEEEECBCT--TTCC--BCTHHHHHHHHHSCT-TSEEEEESSCC
T ss_pred HHHHHHHHHHHHcCCeEEEEeCCHHHHHHHHhcCCCEEEECCCCC--ccCC--CChHHHHHHHHhCCC-CCcEEEECCCC
Confidence 45566778899999999999999999999999998876632 2211 234455566665543 68999999999
Q ss_pred CHHHHHHHHHcCcceeeeccccccCcc
Q 020013 177 DARGYVAALSLGAQGICLGTRFVASEE 203 (332)
Q Consensus 177 ~~~~v~~al~~GA~gV~~GT~fl~t~E 203 (332)
+++++..+..+||+||.+|++|+.+++
T Consensus 231 t~edv~~l~~~Ga~gvLVG~almr~~d 257 (272)
T 3tsm_A 231 THEDCLRLEKSGIGTFLIGESLMRQHD 257 (272)
T ss_dssp SHHHHHHHHTTTCCEEEECHHHHTSSC
T ss_pred CHHHHHHHHHcCCCEEEEcHHHcCCcC
Confidence 999999999999999999999998865
|
| >2zbt_A Pyridoxal biosynthesis lyase PDXS; pyridoxine biosynthesis, structural genomics, NPPSFA; 1.65A {Thermus thermophilus} PDB: 2iss_A* | Back alignment and structure |
|---|
Probab=99.41 E-value=6.8e-13 Score=122.08 Aligned_cols=176 Identities=20% Similarity=0.250 Sum_probs=125.0
Q ss_pred CCCcHHHHHHHHhCCCceeecCCCCCCHHH----------HHHHHHHHHhhcCCcEEEEeecCCCCHHHHHHHHhcCCcE
Q 020013 21 DISGPELVAAVANAGGLGLLRAPDWEAPDY----------LRDLIRKTRSLTERPFGVGVVLAFPHNENIKAILSEKVAV 90 (332)
Q Consensus 21 g~s~~~la~avs~aGglG~i~~~~~~~~e~----------~~~~i~~~r~~~~~p~gvnl~~~~~~~~~~~~~~~~~~~~ 90 (332)
.++..+++.++.++|.-++.... ..+.+. ..+.++++++.++.|+-++.-.. +.+.++.+.+.|+|.
T Consensus 27 ~~~~~~~a~~~~~~Ga~~i~~~e-~v~~~~~~~~G~~~~~~~~~i~~i~~~~~~Pvi~~~~~~--~~~~~~~~~~aGad~ 103 (297)
T 2zbt_A 27 DVTTPEQAVIAEEAGAVAVMALE-RVPADIRAQGGVARMSDPKIIKEIMAAVSIPVMAKVRIG--HFVEAMILEAIGVDF 103 (297)
T ss_dssp EESSHHHHHHHHHHTCSEEEECS-SCHHHHHHTTCCCCCCCHHHHHHHHTTCSSCEEEEEETT--CHHHHHHHHHTTCSE
T ss_pred eechHHHHHHHHHCCCcEEEecc-ccchHHHhhcCCccCCCHHHHHHHHHhcCCCeEEEeccC--CHHHHHHHHHCCCCE
Confidence 35668999999998876653211 111110 12346677777788987765443 367889999999999
Q ss_pred EEEccCCCcHHHHHHHHhC--CCEEEEecCCHHHHHHHHHcCCCEEEEecCCCCc-------c--------------cCC
Q 020013 91 LQVSWGEYSEELVLEAHSA--GVKVVPQVGSFDEARKAVNAGVDAIIVQGREAGG-------H--------------VIG 147 (332)
Q Consensus 91 I~~~~g~~~~~~i~~~~~~--g~~v~~~v~s~~~a~~a~~~g~D~ivv~G~eaGG-------h--------------~~~ 147 (332)
|..++...+.++++.+++. ++.++..+++++++..+.+.|+|+|.++|.+..| | +..
T Consensus 104 v~~~~~~~~~~~~~~~~~~~~~i~l~~~v~~~~~~~~a~~~Gad~I~v~G~~~~g~~~e~~~~~~~~~~~i~~~~g~t~~ 183 (297)
T 2zbt_A 104 IDESEVLTPADEEHHIDKWKFKVPFVCGARNLGEALRRIAEGAAMIRTKGEAGTGNVVEAVRHARTMWKEIRYVQSLRED 183 (297)
T ss_dssp EEEETTSCCSCSSCCCCGGGCSSCEEEEESSHHHHHHHHHTTCSEEEECCCSSSCCTHHHHHHHHHHHHHHHHHHHSCGG
T ss_pred EeeeCCCChHHHHHHHHHhCCCceEEeecCCHHHHHHHHHcCCCEEEEcccccCcchHHHHhhHHHHHHHHHHcCCcCCC
Confidence 9666433333445555543 7788888999999999999999999998753222 1 000
Q ss_pred --------CCchhhhHHHHHHHhCCCCCcEE--eecCcCCHHHHHHHHHcCcceeeeccccccCc
Q 020013 148 --------QDGLISLLPMVVDLIGDRDIPII--AAGGIVDARGYVAALSLGAQGICLGTRFVASE 202 (332)
Q Consensus 148 --------~~~~~~ll~~i~~~~~~~~iPvi--aaGGI~~~~~v~~al~~GA~gV~~GT~fl~t~ 202 (332)
....+.+++++++.. ++|++ +.|||++++++.+++.+|||+|++||+++.+.
T Consensus 184 ~~~~~~~~~~~~~~~i~~l~~~~---~~pvi~~a~GGI~~~e~i~~~~~aGadgvvvGsai~~~~ 245 (297)
T 2zbt_A 184 ELMAYAKEIGAPFELVKWVHDHG---RLPVVNFAAGGIATPADAALMMHLGMDGVFVGSGIFKSG 245 (297)
T ss_dssp GHHHHHHHHTCCHHHHHHHHHHS---SCSSCEEBCSSCCSHHHHHHHHHTTCSEEEECGGGGGSS
T ss_pred CchhhhhcchhhHHHHHHHHHhc---CCCcEEEeeCCCCCHHHHHHHHHcCCCEEEEchHHhCCC
Confidence 012356677777765 68988 99999999999999999999999999999753
|
| >3f4w_A Putative hexulose 6 phosphate synthase; humps, malonate, lyase; 1.65A {Salmonella typhimurium} SCOP: c.1.2.0 | Back alignment and structure |
|---|
Probab=99.39 E-value=4.2e-12 Score=110.79 Aligned_cols=145 Identities=17% Similarity=0.179 Sum_probs=109.4
Q ss_pred HHHHHHHhh-cCCcEEEEeecCCCCHHHHHHHHhcCCcEEEEccCCC---cHHHHHHHHhCCCEEEEe---cCCH-HHHH
Q 020013 53 DLIRKTRSL-TERPFGVGVVLAFPHNENIKAILSEKVAVLQVSWGEY---SEELVLEAHSAGVKVVPQ---VGSF-DEAR 124 (332)
Q Consensus 53 ~~i~~~r~~-~~~p~gvnl~~~~~~~~~~~~~~~~~~~~I~~~~g~~---~~~~i~~~~~~g~~v~~~---v~s~-~~a~ 124 (332)
+.++++|+. ++.|+.+|+++..+.+..++.+.+.|+|.|.+|.... ..++++.+++.|++++.. +.++ +.++
T Consensus 42 ~~i~~ir~~~~~~~i~~~~~~~~~~~~~~~~~~~~Gad~v~v~~~~~~~~~~~~~~~~~~~g~~~~v~~~~~~t~~~~~~ 121 (211)
T 3f4w_A 42 NAIKAIKEKYPHKEVLADAKIMDGGHFESQLLFDAGADYVTVLGVTDVLTIQSCIRAAKEAGKQVVVDMICVDDLPARVR 121 (211)
T ss_dssp HHHHHHHHHCTTSEEEEEEEECSCHHHHHHHHHHTTCSEEEEETTSCHHHHHHHHHHHHHHTCEEEEECTTCSSHHHHHH
T ss_pred HHHHHHHHhCCCCEEEEEEEeccchHHHHHHHHhcCCCEEEEeCCCChhHHHHHHHHHHHcCCeEEEEecCCCCHHHHHH
Confidence 457777776 6889999998876544458999999999999984321 145677788889998865 3344 6688
Q ss_pred HHHHcCCCEEEEecCCCCcccCCCCchhhhHHHHHHHhCCCCCcEEeecCcCCHHHHHHHHHcCcceeeeccccccCc
Q 020013 125 KAVNAGVDAIIVQGREAGGHVIGQDGLISLLPMVVDLIGDRDIPIIAAGGIVDARGYVAALSLGAQGICLGTRFVASE 202 (332)
Q Consensus 125 ~a~~~g~D~ivv~G~eaGGh~~~~~~~~~ll~~i~~~~~~~~iPviaaGGI~~~~~v~~al~~GA~gV~~GT~fl~t~ 202 (332)
.+.+.|+|+|.+. +..+|...+ ...+..++++++... ++|+++.||| +++++.+++.+|||+|++||+++.++
T Consensus 122 ~~~~~g~d~i~v~-~g~~g~~~~-~~~~~~i~~l~~~~~--~~~i~~~gGI-~~~~~~~~~~~Gad~vvvGsai~~~~ 194 (211)
T 3f4w_A 122 LLEEAGADMLAVH-TGTDQQAAG-RKPIDDLITMLKVRR--KARIAVAGGI-SSQTVKDYALLGPDVVIVGSAITHAA 194 (211)
T ss_dssp HHHHHTCCEEEEE-CCHHHHHTT-CCSHHHHHHHHHHCS--SCEEEEESSC-CTTTHHHHHTTCCSEEEECHHHHTCS
T ss_pred HHHHcCCCEEEEc-CCCcccccC-CCCHHHHHHHHHHcC--CCcEEEECCC-CHHHHHHHHHcCCCEEEECHHHcCCC
Confidence 8999999998774 322233211 124677888887653 6999999999 59999999999999999999998764
|
| >2v82_A 2-dehydro-3-deoxy-6-phosphogalactonate aldolase; lyase, kdpgal; HET: KDP; 2.1A {Escherichia coli} PDB: 2v81_A* | Back alignment and structure |
|---|
Probab=99.39 E-value=8.8e-12 Score=108.92 Aligned_cols=154 Identities=17% Similarity=0.255 Sum_probs=111.3
Q ss_pred CCCceeecCCCCCCHHHHHHHHHHHHhhcCCcEEEEeecCCCCHHHHHHHHhcCCcEEEEccCCCcHHHHHHHHhCCCEE
Q 020013 34 AGGLGLLRAPDWEAPDYLRDLIRKTRSLTERPFGVGVVLAFPHNENIKAILSEKVAVLQVSWGEYSEELVLEAHSAGVKV 113 (332)
Q Consensus 34 aGglG~i~~~~~~~~e~~~~~i~~~r~~~~~p~gvnl~~~~~~~~~~~~~~~~~~~~I~~~~g~~~~~~i~~~~~~g~~v 113 (332)
.||+..+.. +..+++.+ +.++++++..+.++-++.-... +.+.++.+.+.|+|+|++. ....++++.+++.|.++
T Consensus 30 ~~G~~~i~l-~~~~~~~~-~~i~~i~~~~~~~l~vg~g~~~-~~~~i~~a~~~Gad~V~~~--~~~~~~~~~~~~~g~~~ 104 (212)
T 2v82_A 30 DAGFDAVEI-PLNSPQWE-QSIPAIVDAYGDKALIGAGTVL-KPEQVDALARMGCQLIVTP--NIHSEVIRRAVGYGMTV 104 (212)
T ss_dssp HHTCCEEEE-ETTSTTHH-HHHHHHHHHHTTTSEEEEECCC-SHHHHHHHHHTTCCEEECS--SCCHHHHHHHHHTTCEE
T ss_pred HCCCCEEEE-eCCChhHH-HHHHHHHHhCCCCeEEEecccc-CHHHHHHHHHcCCCEEEeC--CCCHHHHHHHHHcCCCE
Confidence 356777755 23444443 3455555444555555322111 3568999999999999754 45677888888899998
Q ss_pred EEecCCHHHHHHHHHcCCCEEEEecCCCCcccCCCCchhhhHHHHHHHhCCCCCcEEeecCcCCHHHHHHHHHcCcceee
Q 020013 114 VPQVGSFDEARKAVNAGVDAIIVQGREAGGHVIGQDGLISLLPMVVDLIGDRDIPIIAAGGIVDARGYVAALSLGAQGIC 193 (332)
Q Consensus 114 ~~~v~s~~~a~~a~~~g~D~ivv~G~eaGGh~~~~~~~~~ll~~i~~~~~~~~iPviaaGGI~~~~~v~~al~~GA~gV~ 193 (332)
+..++|+++++.+.+.|+|+|.+... . ...+..++++++.++. ++||++.||| +.+++.+++++||++|.
T Consensus 105 ~~g~~t~~e~~~a~~~G~d~v~v~~t---~-----~~g~~~~~~l~~~~~~-~ipvia~GGI-~~~~i~~~~~~Ga~gv~ 174 (212)
T 2v82_A 105 CPGCATATEAFTALEAGAQALKIFPS---S-----AFGPQYIKALKAVLPS-DIAVFAVGGV-TPENLAQWIDAGCAGAG 174 (212)
T ss_dssp ECEECSHHHHHHHHHTTCSEEEETTH---H-----HHCHHHHHHHHTTSCT-TCEEEEESSC-CTTTHHHHHHHTCSEEE
T ss_pred EeecCCHHHHHHHHHCCCCEEEEecC---C-----CCCHHHHHHHHHhccC-CCeEEEeCCC-CHHHHHHHHHcCCCEEE
Confidence 88899999999999999999987321 1 1125667777765521 4999999999 59999999999999999
Q ss_pred eccccccCc
Q 020013 194 LGTRFVASE 202 (332)
Q Consensus 194 ~GT~fl~t~ 202 (332)
+||+|+.+.
T Consensus 175 vGsai~~~~ 183 (212)
T 2v82_A 175 LGSDLYRAG 183 (212)
T ss_dssp ECTTTCCTT
T ss_pred EChHHhCCC
Confidence 999998763
|
| >1mxs_A KDPG aldolase; 2-keto-3-deoxy-6-phosphogluconate aldolase, sulfate, beta-BA lyase; 2.20A {Pseudomonas putida} SCOP: c.1.10.1 | Back alignment and structure |
|---|
Probab=99.37 E-value=2e-12 Score=113.98 Aligned_cols=158 Identities=18% Similarity=0.250 Sum_probs=117.6
Q ss_pred HHHHHHHhCCCceeecCCCCCCHHHHHHHHHHHHhh-cCCcEEEEeecCCCCHHHHHHHHhcCCcEEEEccCCCcHHHHH
Q 020013 26 ELVAAVANAGGLGLLRAPDWEAPDYLRDLIRKTRSL-TERPFGVGVVLAFPHNENIKAILSEKVAVLQVSWGEYSEELVL 104 (332)
Q Consensus 26 ~la~avs~aGglG~i~~~~~~~~e~~~~~i~~~r~~-~~~p~gvnl~~~~~~~~~~~~~~~~~~~~I~~~~g~~~~~~i~ 104 (332)
+++.++. .||+.++... +.++.. .+.++++++. .+..++.+.++ ..+.++.+++.|+|+|+++ + ...++.+
T Consensus 42 ~~~~al~-~gGv~~iel~-~k~~~~-~~~i~~l~~~~~~~~igagtvl---~~d~~~~A~~aGAd~v~~p-~-~d~~v~~ 113 (225)
T 1mxs_A 42 PLADALA-AGGIRTLEVT-LRSQHG-LKAIQVLREQRPELCVGAGTVL---DRSMFAAVEAAGAQFVVTP-G-ITEDILE 113 (225)
T ss_dssp HHHHHHH-HTTCCEEEEE-SSSTHH-HHHHHHHHHHCTTSEEEEECCC---SHHHHHHHHHHTCSSEECS-S-CCHHHHH
T ss_pred HHHHHHH-HCCCCEEEEe-cCCccH-HHHHHHHHHhCcccEEeeCeEe---eHHHHHHHHHCCCCEEEeC-C-CCHHHHH
Confidence 3444443 4778888763 555544 3456655443 35556777644 3688999999999999876 3 4667888
Q ss_pred HHHhCCCEEEEecCCHHHHHHHHHcCCCEEEEecCCCCcccCCCCchhhhHHHHHHHhCCCCCcEEeecCcCCHHHHHHH
Q 020013 105 EAHSAGVKVVPQVGSFDEARKAVNAGVDAIIVQGREAGGHVIGQDGLISLLPMVVDLIGDRDIPIIAAGGIVDARGYVAA 184 (332)
Q Consensus 105 ~~~~~g~~v~~~v~s~~~a~~a~~~g~D~ivv~G~eaGGh~~~~~~~~~ll~~i~~~~~~~~iPviaaGGI~~~~~v~~a 184 (332)
..+..|+.+++.+.|++|+..+.+.|+|+|.+...+ .......++.++..++ ++|+++.||| +.+|+.++
T Consensus 114 ~~~~~g~~~i~G~~t~~e~~~A~~~Gad~vk~FPa~-------~~~G~~~lk~i~~~~~--~ipvvaiGGI-~~~N~~~~ 183 (225)
T 1mxs_A 114 AGVDSEIPLLPGISTPSEIMMGYALGYRRFKLFPAE-------ISGGVAAIKAFGGPFG--DIRFCPTGGV-NPANVRNY 183 (225)
T ss_dssp HHHHCSSCEECEECSHHHHHHHHTTTCCEEEETTHH-------HHTHHHHHHHHHTTTT--TCEEEEBSSC-CTTTHHHH
T ss_pred HHHHhCCCEEEeeCCHHHHHHHHHCCCCEEEEccCc-------cccCHHHHHHHHhhCC--CCeEEEECCC-CHHHHHHH
Confidence 888899999988999999999999999999882210 0112466777776654 6999999999 89999999
Q ss_pred HH-cCcceeeeccccccCc
Q 020013 185 LS-LGAQGICLGTRFVASE 202 (332)
Q Consensus 185 l~-~GA~gV~~GT~fl~t~ 202 (332)
++ .|+++|. ||.++..+
T Consensus 184 l~~~Ga~~v~-gSai~~~~ 201 (225)
T 1mxs_A 184 MALPNVMCVG-TTWMLDSS 201 (225)
T ss_dssp HHSTTBCCEE-ECTTSCHH
T ss_pred HhccCCEEEE-EchhcCch
Confidence 99 6999999 99987654
|
| >3ceu_A Thiamine phosphate pyrophosphorylase; TIM barrel-like protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacteroides thetaiotaomicron vpi-5482} | Back alignment and structure |
|---|
Probab=99.35 E-value=3.3e-12 Score=111.64 Aligned_cols=174 Identities=14% Similarity=0.096 Sum_probs=113.6
Q ss_pred HHHHHHHHhCCCceeecCCC-CCCHHHHHHHHHHHHhhcCCcEEEEeecCCCCHHHHHHHHhcCCcEEEEccCCCcHHHH
Q 020013 25 PELVAAVANAGGLGLLRAPD-WEAPDYLRDLIRKTRSLTERPFGVGVVLAFPHNENIKAILSEKVAVLQVSWGEYSEELV 103 (332)
Q Consensus 25 ~~la~avs~aGglG~i~~~~-~~~~e~~~~~i~~~r~~~~~p~gvnl~~~~~~~~~~~~~~~~~~~~I~~~~g~~~~~~i 103 (332)
.+.+.++.. +|+..+.... ..+.+++.+.++++. . .+++.++++. .++.+.+.+++.|+++..+.+. .
T Consensus 16 ~~~~~~a~~-~Gv~~v~lr~k~~~~~~~~~~i~~l~---~-~~~~~livnd----~~~~A~~~gadgvhl~~~~~~~--~ 84 (210)
T 3ceu_A 16 DKIITALFE-EGLDILHLRKPETPAMYSERLLTLIP---E-KYHRRIVTHE----HFYLKEEFNLMGIHLNARNPSE--P 84 (210)
T ss_dssp HHHHHHHHH-TTCCEEEECCSSCCHHHHHHHHHHSC---G-GGGGGEEESS----CTTHHHHTTCSEEECCSSSCSC--C
T ss_pred HHHHHHHHH-CCCCEEEEccCCCCHHHHHHHHHHHH---H-HhCCeEEEeC----CHHHHHHcCCCEEEECcccccc--c
Confidence 344554444 5566665421 134555555554433 2 3567777753 3578889999999886443221 1
Q ss_pred HHHHhCCCEEEEecCCHHHHHHHHHcCCCEEEEec-CCCCcccCC-CCchhhhHHHHHHHhCCCCCcEEeecCcCCHHHH
Q 020013 104 LEAHSAGVKVVPQVGSFDEARKAVNAGVDAIIVQG-REAGGHVIG-QDGLISLLPMVVDLIGDRDIPIIAAGGIVDARGY 181 (332)
Q Consensus 104 ~~~~~~g~~v~~~v~s~~~a~~a~~~g~D~ivv~G-~eaGGh~~~-~~~~~~ll~~i~~~~~~~~iPviaaGGI~~~~~v 181 (332)
...+..+...++|++++..+. .|+|+|.+.. +...+|.+. ....+..++++.+.+. .++||++.||| +++|+
T Consensus 85 ---~~~~~~ig~s~~t~~e~~~A~-~GaDyv~~g~vf~t~sk~~~~~~~g~~~l~~~~~~~~-~~iPviaiGGI-~~~nv 158 (210)
T 3ceu_A 85 ---HDYAGHVSCSCHSVEEVKNRK-HFYDYVFMSPIYDSISKVNYYSTYTAEELREAQKAKI-IDSKVMALGGI-NEDNL 158 (210)
T ss_dssp ---TTCCSEEEEEECSHHHHHTTG-GGSSEEEECCCC---------CCCCHHHHHHHHHTTC-SSTTEEEESSC-CTTTH
T ss_pred ---cccCCEEEEecCCHHHHHHHh-hCCCEEEECCcCCCCCCCCCCCCCCHHHHHHHHHhcC-CCCCEEEECCC-CHHHH
Confidence 124778889999999999988 9999999844 233444311 1234677787776520 16999999999 79999
Q ss_pred HHHHHcCcceeeeccccccCccCCCCHHHHHHHh
Q 020013 182 VAALSLGAQGICLGTRFVASEESYAHPEYKRKLV 215 (332)
Q Consensus 182 ~~al~~GA~gV~~GT~fl~t~Es~~~~~~k~~~~ 215 (332)
.+++.+||+||.++|.++..++......|++.+.
T Consensus 159 ~~~~~~Ga~gVav~s~i~~~~d~~~~~~~~~~v~ 192 (210)
T 3ceu_A 159 LEIKDFGFGGAVVLGDLWNKFDACLDQNYLAVIE 192 (210)
T ss_dssp HHHHHTTCSEEEESHHHHTTCCTTTSSCCHHHHH
T ss_pred HHHHHhCCCEEEEhHHhHcCCCHHHHHHHHHHHH
Confidence 9999999999999999998766554455555443
|
| >1rpx_A Protein (ribulose-phosphate 3-epimerase); chloroplast, calvin cycle, oxidative pentose PH pathway; 2.30A {Solanum tuberosum} SCOP: c.1.2.2 | Back alignment and structure |
|---|
Probab=99.34 E-value=5.3e-12 Score=111.78 Aligned_cols=149 Identities=14% Similarity=0.210 Sum_probs=108.5
Q ss_pred HHHHHHHhhcCCcEEEEeecCCCCHHHHHHHHhcCCcEEEEccC--C--CcHHHHHHHHhCCCEEEEec--CCHHHHHHH
Q 020013 53 DLIRKTRSLTERPFGVGVVLAFPHNENIKAILSEKVAVLQVSWG--E--YSEELVLEAHSAGVKVVPQV--GSFDEARKA 126 (332)
Q Consensus 53 ~~i~~~r~~~~~p~gvnl~~~~~~~~~~~~~~~~~~~~I~~~~g--~--~~~~~i~~~~~~g~~v~~~v--~s~~~a~~a 126 (332)
+.++++++.++.|+.+.++++++ ++.++.+.+.|+|.|++|.. . .+.+.++.+++.|++++..+ ++..+....
T Consensus 58 ~~i~~l~~~~~~~~~v~l~vnd~-~~~v~~~~~~Gad~v~vh~~~~~~~~~~~~~~~~~~~g~~ig~~~~p~t~~e~~~~ 136 (230)
T 1rpx_A 58 LVVDSLRPITDLPLDVHLMIVEP-DQRVPDFIKAGADIVSVHCEQSSTIHLHRTINQIKSLGAKAGVVLNPGTPLTAIEY 136 (230)
T ss_dssp HHHHHHGGGCCSCEEEEEESSSH-HHHHHHHHHTTCSEEEEECSTTTCSCHHHHHHHHHHTTSEEEEEECTTCCGGGGTT
T ss_pred HHHHHHHhccCCcEEEEEEecCH-HHHHHHHHHcCCCEEEEEecCccchhHHHHHHHHHHcCCcEEEEeCCCCCHHHHHH
Confidence 45677777777799999999864 46788889999999999954 2 34467888888899888776 455555555
Q ss_pred HHcCCCEEEEecCCCCcccC-CCCchhhhHHHHHHHhC--CCCCcEEeecCcCCHHHHHHHHHcCcceeeeccccccCcc
Q 020013 127 VNAGVDAIIVQGREAGGHVI-GQDGLISLLPMVVDLIG--DRDIPIIAAGGIVDARGYVAALSLGAQGICLGTRFVASEE 203 (332)
Q Consensus 127 ~~~g~D~ivv~G~eaGGh~~-~~~~~~~ll~~i~~~~~--~~~iPviaaGGI~~~~~v~~al~~GA~gV~~GT~fl~t~E 203 (332)
+..++|+|.+.+...|+... .....+..+.++++... ..++|+++.||| +++++.+++++|||+|.+||+++.++.
T Consensus 137 ~~~~~d~vl~~~~~pg~~g~~~~~~~~~~i~~l~~~~~~~~~~~pi~v~GGI-~~~n~~~~~~aGad~vvvgSaI~~a~d 215 (230)
T 1rpx_A 137 VLDAVDLVLIMSVNPGFGGQSFIESQVKKISDLRKICAERGLNPWIEVDGGV-GPKNAYKVIEAGANALVAGSAVFGAPD 215 (230)
T ss_dssp TTTTCSEEEEESSCTTCSSCCCCTTHHHHHHHHHHHHHHHTCCCEEEEESSC-CTTTHHHHHHHTCCEEEESHHHHTSSC
T ss_pred HHhhCCEEEEEEEcCCCCCccccHHHHHHHHHHHHHHHhcCCCceEEEECCC-CHHHHHHHHHcCCCEEEEChhhhCCCC
Confidence 56789999887665443210 11223445555555431 115899999999 689999999999999999999987543
|
| >2tps_A Protein (thiamin phosphate synthase); thiamin biosynthesis, TIM barrel; HET: TPS; 1.25A {Bacillus subtilis} SCOP: c.1.3.1 PDB: 1g4t_A* 3o15_A* 1g6c_A* 1g4e_A* 1g69_A* 3o16_A 1g4s_A* 1g4p_A* 1g67_A* | Back alignment and structure |
|---|
Probab=99.34 E-value=5.9e-12 Score=111.00 Aligned_cols=165 Identities=16% Similarity=0.171 Sum_probs=106.5
Q ss_pred HHHHHHHhCCCceeecCCC-CCCHHHH---HHHHHHHHhhcCCcEEEEeecCCCCHHHHHHHHhcCCcEEEEccCCCcHH
Q 020013 26 ELVAAVANAGGLGLLRAPD-WEAPDYL---RDLIRKTRSLTERPFGVGVVLAFPHNENIKAILSEKVAVLQVSWGEYSEE 101 (332)
Q Consensus 26 ~la~avs~aGglG~i~~~~-~~~~e~~---~~~i~~~r~~~~~p~gvnl~~~~~~~~~~~~~~~~~~~~I~~~~g~~~~~ 101 (332)
+.+.++.++| +..+.... ..++..+ .+.++.+++.+. +++++++++ +.++.+.+.++++|++..... +
T Consensus 35 ~~~~~~~~~G-~~~i~l~~~~~~~~~~~~~~~~~~~l~~~~~-~~~v~v~v~----~~~~~a~~~gad~v~l~~~~~--~ 106 (227)
T 2tps_A 35 TVVQKALKGG-ATLYQFREKGGDALTGEARIKFAEKAQAACR-EAGVPFIVN----DDVELALNLKADGIHIGQEDA--N 106 (227)
T ss_dssp HHHHHHHHHT-CSEEEECCCSTTCCCHHHHHHHHHHHHHHHH-HHTCCEEEE----SCHHHHHHHTCSEEEECTTSS--C
T ss_pred HHHHHHHHCC-CCEEEEecCCCCHhHHHHHHHHHHHHHHHHH-HcCCeEEEc----CHHHHHHHcCCCEEEECCCcc--C
Confidence 4556665555 44443210 1233333 455555554432 345555553 346788889999999853322 2
Q ss_pred HHHHHHhCC-CEEEEecCCHHHHHHHHHcCCCEEEEec-CCCCcccC-CCCchhhhHHHHHHHhCCCC-CcEEeecCcCC
Q 020013 102 LVLEAHSAG-VKVVPQVGSFDEARKAVNAGVDAIIVQG-REAGGHVI-GQDGLISLLPMVVDLIGDRD-IPIIAAGGIVD 177 (332)
Q Consensus 102 ~i~~~~~~g-~~v~~~v~s~~~a~~a~~~g~D~ivv~G-~eaGGh~~-~~~~~~~ll~~i~~~~~~~~-iPviaaGGI~~ 177 (332)
+.+..+..| ..+...+++.+++..+.+.|+|+|++.. +..+.+.+ +....+.+++++++.. + +||+++||| +
T Consensus 107 ~~~~~~~~g~~~~~~s~~t~~e~~~a~~~g~d~v~~~~v~~t~~~~~~~~~~~~~~l~~~~~~~---~~~pvia~GGI-~ 182 (227)
T 2tps_A 107 AKEVRAAIGDMILGVSAHTMSEVKQAEEDGADYVGLGPIYPTETKKDTRAVQGVSLIEAVRRQG---ISIPIVGIGGI-T 182 (227)
T ss_dssp HHHHHHHHTTSEEEEEECSHHHHHHHHHHTCSEEEECCSSCCCSSSSCCCCCTTHHHHHHHHTT---CCCCEEEESSC-C
T ss_pred HHHHHHhcCCcEEEEecCCHHHHHHHHhCCCCEEEECCCcCCCCCCCCCCccCHHHHHHHHHhC---CCCCEEEEcCC-C
Confidence 222222234 4555567899999999999999999722 12222221 2234578888888766 5 999999999 5
Q ss_pred HHHHHHHHHcCcceeeeccccccCc
Q 020013 178 ARGYVAALSLGAQGICLGTRFVASE 202 (332)
Q Consensus 178 ~~~v~~al~~GA~gV~~GT~fl~t~ 202 (332)
++|+.+++.+||+||.+||+++.++
T Consensus 183 ~~nv~~~~~~Ga~gv~vgs~i~~~~ 207 (227)
T 2tps_A 183 IDNAAPVIQAGADGVSMISAISQAE 207 (227)
T ss_dssp TTTSHHHHHTTCSEEEESHHHHTSS
T ss_pred HHHHHHHHHcCCCEEEEhHHhhcCC
Confidence 9999999999999999999998763
|
| >1wv2_A Thiazole moeity, thiazole biosynthesis protein THIG; structural genomics, protein structure initiative, PSI; 2.90A {Pseudomonas aeruginosa} SCOP: c.1.31.1 | Back alignment and structure |
|---|
Probab=99.32 E-value=6.9e-12 Score=110.78 Aligned_cols=124 Identities=15% Similarity=0.202 Sum_probs=94.7
Q ss_pred CCcEEEEcc-CC------CcHHHH---HHHHhCCCEEEE-ecCCHHHHHHHHHcCCCEEEEecCCCCcccCCCCchhhhH
Q 020013 87 KVAVLQVSW-GE------YSEELV---LEAHSAGVKVVP-QVGSFDEARKAVNAGVDAIIVQGREAGGHVIGQDGLISLL 155 (332)
Q Consensus 87 ~~~~I~~~~-g~------~~~~~i---~~~~~~g~~v~~-~v~s~~~a~~a~~~g~D~ivv~G~eaGGh~~~~~~~~~ll 155 (332)
+-++|.+-. ++ .+.+.+ +.+.+.|+++++ .+.++..+++.++.|+|+|...|..-|+.. + ..++.+|
T Consensus 102 ~~~~iKlEv~~d~~~llpD~~~tv~aa~~L~~~Gf~Vlpy~~dd~~~akrl~~~G~~aVmPlg~pIGsG~-G-i~~~~lI 179 (265)
T 1wv2_A 102 GHNLVKLEVLADQKTLFPNVVETLKAAEQLVKDGFDVMVYTSDDPIIARQLAEIGCIAVMPLAGLIGSGL-G-ICNPYNL 179 (265)
T ss_dssp SCCEEEECCBSCTTTCCBCHHHHHHHHHHHHTTTCEEEEEECSCHHHHHHHHHSCCSEEEECSSSTTCCC-C-CSCHHHH
T ss_pred CCCeEEEEeecCccccCcCHHHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHhCCCEEEeCCccCCCCC-C-cCCHHHH
Confidence 678887632 22 123444 445566999996 667999999999999999988777655532 2 2458899
Q ss_pred HHHHHHhCCCCCcEEeecCcCCHHHHHHHHHcCcceeeeccccccCccCCC--CHHHHHHHhc
Q 020013 156 PMVVDLIGDRDIPIIAAGGIVDARGYVAALSLGAQGICLGTRFVASEESYA--HPEYKRKLVE 216 (332)
Q Consensus 156 ~~i~~~~~~~~iPviaaGGI~~~~~v~~al~~GA~gV~~GT~fl~t~Es~~--~~~~k~~~~~ 216 (332)
+.+++.. ++|||++|||+++++++.++.+|||||++||++..+ |.+. ...|++++..
T Consensus 180 ~~I~e~~---~vPVI~eGGI~TPsDAa~AmeLGAdgVlVgSAI~~a-~dP~~ma~af~~Av~a 238 (265)
T 1wv2_A 180 RIILEEA---KVPVLVDAGVGTASDAAIAMELGCEAVLMNTAIAHA-KDPVMMAEAMKHAIVA 238 (265)
T ss_dssp HHHHHHC---SSCBEEESCCCSHHHHHHHHHHTCSEEEESHHHHTS-SSHHHHHHHHHHHHHH
T ss_pred HHHHhcC---CCCEEEeCCCCCHHHHHHHHHcCCCEEEEChHHhCC-CCHHHHHHHHHHHHHH
Confidence 9999876 799999999999999999999999999999999843 4443 5667776643
|
| >1vzw_A Phosphoribosyl isomerase A; histidine biosynthesis, tryptophan biosynthesis; 1.8A {Streptomyces coelicolor} SCOP: c.1.2.1 PDB: 2vep_A 2x30_A | Back alignment and structure |
|---|
Probab=99.31 E-value=9e-12 Score=111.16 Aligned_cols=144 Identities=18% Similarity=0.242 Sum_probs=104.1
Q ss_pred HHHHHHHhhcCCcEEEEeecCCCCHHHHHHHHhcCCcEEEEccCC--CcHHHHHHHHhCCCEE--EEecC----------
Q 020013 53 DLIRKTRSLTERPFGVGVVLAFPHNENIKAILSEKVAVLQVSWGE--YSEELVLEAHSAGVKV--VPQVG---------- 118 (332)
Q Consensus 53 ~~i~~~r~~~~~p~gvnl~~~~~~~~~~~~~~~~~~~~I~~~~g~--~~~~~i~~~~~~g~~v--~~~v~---------- 118 (332)
+.++++++.++.|+-+|..+.. .+.++.+++.|+|.|.++... .|..+.+.++..|.++ ...+.
T Consensus 65 ~~i~~i~~~~~ipv~v~ggI~~--~~~~~~~l~~Gad~V~lg~~~l~~p~~~~~~~~~~g~~~~~~l~~~~g~v~~~g~~ 142 (244)
T 1vzw_A 65 ALIAEVAQAMDIKVELSGGIRD--DDTLAAALATGCTRVNLGTAALETPEWVAKVIAEHGDKIAVGLDVRGTTLRGRGWT 142 (244)
T ss_dssp HHHHHHHHHCSSEEEEESSCCS--HHHHHHHHHTTCSEEEECHHHHHCHHHHHHHHHHHGGGEEEEEEEETTEECCSSSC
T ss_pred HHHHHHHHhcCCcEEEECCcCC--HHHHHHHHHcCCCEEEECchHhhCHHHHHHHHHHcCCcEEEEEEccCCEEEEcCcc
Confidence 5677787777899999887764 456888899999999987421 2333444444444332 23332
Q ss_pred ----C-HHHHHHHHHcCCCEEEEecCCCCcccCCCCchhhhHHHHHHHhCCCCCcEEeecCcCCHHHHHHHHHc---Ccc
Q 020013 119 ----S-FDEARKAVNAGVDAIIVQGREAGGHVIGQDGLISLLPMVVDLIGDRDIPIIAAGGIVDARGYVAALSL---GAQ 190 (332)
Q Consensus 119 ----s-~~~a~~a~~~g~D~ivv~G~eaGGh~~~~~~~~~ll~~i~~~~~~~~iPviaaGGI~~~~~v~~al~~---GA~ 190 (332)
+ .+.++.+++.|+|.|++.+.+.+|+..+ ..+.+++++++.+ ++||++.|||.+++++.+++++ ||+
T Consensus 143 ~~~~~~~e~~~~~~~~G~~~i~~~~~~~~~~~~g--~~~~~~~~i~~~~---~ipvia~GGI~~~~d~~~~~~~~~~Gad 217 (244)
T 1vzw_A 143 RDGGDLYETLDRLNKEGCARYVVTDIAKDGTLQG--PNLELLKNVCAAT---DRPVVASGGVSSLDDLRAIAGLVPAGVE 217 (244)
T ss_dssp CCCCBHHHHHHHHHHTTCCCEEEEEC-------C--CCHHHHHHHHHTC---SSCEEEESCCCSHHHHHHHHTTGGGTEE
T ss_pred cCCCCHHHHHHHHHhCCCCEEEEeccCcccccCC--CCHHHHHHHHHhc---CCCEEEECCCCCHHHHHHHHhhccCCCc
Confidence 4 4557889999999999988766665322 3578888888776 7999999999999999999999 999
Q ss_pred eeeeccccccCcc
Q 020013 191 GICLGTRFVASEE 203 (332)
Q Consensus 191 gV~~GT~fl~t~E 203 (332)
+|++||+|+..+.
T Consensus 218 gv~vG~al~~~~~ 230 (244)
T 1vzw_A 218 GAIVGKALYAKAF 230 (244)
T ss_dssp EEEECHHHHTTSS
T ss_pred eeeeeHHHHcCCC
Confidence 9999999997653
|
| >4aaj_A N-(5'-phosphoribosyl)anthranilate isomerase; alpha/beta-barrel, hyperthermophilic, phosphoribo isomerase; 1.75A {Pyrococcus furiosus} | Back alignment and structure |
|---|
Probab=99.31 E-value=6.1e-11 Score=104.47 Aligned_cols=161 Identities=19% Similarity=0.263 Sum_probs=112.2
Q ss_pred CCCcHHHHHHHHhCC--CceeecC---CCCCCHHHHHHHHHHHHhhcCCcEEEEeecCCCCHHHHHHHHhcCCcEEEEcc
Q 020013 21 DISGPELVAAVANAG--GLGLLRA---PDWEAPDYLRDLIRKTRSLTERPFGVGVVLAFPHNENIKAILSEKVAVLQVSW 95 (332)
Q Consensus 21 g~s~~~la~avs~aG--glG~i~~---~~~~~~e~~~~~i~~~r~~~~~p~gvnl~~~~~~~~~~~~~~~~~~~~I~~~~ 95 (332)
|+++++.+.++ ++| .+||+.. +++.+++..+++++.. ...++.+.++++. ++..+.+.+.+.|+|++|
T Consensus 27 Git~~ed~~a~-~~gaD~iGfIf~~~SpR~V~~~~A~~i~~~~---~~~~~~v~v~v~~--~ei~~~i~~~~ld~vQLH- 99 (228)
T 4aaj_A 27 GIKSLEELEIV-EKHADATGVVVNSNSKRRIPLEKAREIIENS---AIPVFLVSTMVGF--SEWAMAIERTGAQYIQVH- 99 (228)
T ss_dssp CCCSHHHHHHH-HTTCSEEEEECSSSSTTBCCHHHHHHHHHHC---SSCEEEEECCCCH--HHHHHHHHHHTCSEEEEC-
T ss_pred CCCcHHHHHHH-HcCCCEEEEEecCCCCCCCCHHHHHHHHHhh---CCCCEEEeccCch--HHHHHHHHhccchheecc-
Confidence 57888887654 677 5999974 4567888776665532 2345666666642 455666677899999999
Q ss_pred CCCcHHHHHHHHh-CCCEEEEec--CC----H-HHH----HHHHHcCCCEEEEecCCCCcccCCCCchhhhHHHHHHHhC
Q 020013 96 GEYSEELVLEAHS-AGVKVVPQV--GS----F-DEA----RKAVNAGVDAIIVQGREAGGHVIGQDGLISLLPMVVDLIG 163 (332)
Q Consensus 96 g~~~~~~i~~~~~-~g~~v~~~v--~s----~-~~a----~~a~~~g~D~ivv~G~eaGGh~~~~~~~~~ll~~i~~~~~ 163 (332)
|+++++.++.+++ .+++++..+ .+ . +++ ..+....+|+++++.. ||. |....|.+++.+..
T Consensus 100 G~E~~~~~~~l~~~~~~~viKa~~v~~~~~~~~~~~~~~~~~~~~~~~d~~LlDs~--GGt--G~~fDW~~~~~~~~--- 172 (228)
T 4aaj_A 100 SNALPQTIDTLKKEFGVFVMKAFRVPTISKNPEEDANRLLSEISRYNADMVLLDTG--AGS--GKLHDLRVSSLVAR--- 172 (228)
T ss_dssp SCCCHHHHHHHHHHHCCEEEEEEECCSSCSCHHHHHHHHHHHHHHSCCSEEEEEC-----------CCCHHHHHHHH---
T ss_pred cccCHHHHHHHhhccCceEEEEEEecccccchhhhHHHHHHHHhccCCCEEccCCC--CCC--cCcCChHHHHHhhh---
Confidence 6678888888876 488887543 21 1 222 2334567999999864 332 34456888877654
Q ss_pred CCCCcEEeecCcCCHHHHHHHHH-cCcceeeecccc
Q 020013 164 DRDIPIIAAGGIVDARGYVAALS-LGAQGICLGTRF 198 (332)
Q Consensus 164 ~~~iPviaaGGI~~~~~v~~al~-~GA~gV~~GT~f 198 (332)
+.|++.|||| +++||.++++ .+..||-+-|.+
T Consensus 173 --~~p~iLAGGL-~peNV~~Ai~~~~P~gVDVsSGV 205 (228)
T 4aaj_A 173 --KIPVIVAGGL-NAENVEEVIKVVKPYGVDVSSGV 205 (228)
T ss_dssp --HSCEEEESSC-CTTTHHHHHHHHCCSEEEESGGG
T ss_pred --cCCeEEECCC-CHHHHHHHHHHhCCCEEEeCCCC
Confidence 5799999999 8999999997 799999999887
|
| >2fli_A Ribulose-phosphate 3-epimerase; (beta/alpha)8-barrel, D- xylitol 5-phosphate, isomerase; HET: DX5; 1.80A {Streptococcus pyogenes} SCOP: c.1.2.2 | Back alignment and structure |
|---|
Probab=99.27 E-value=2.2e-11 Score=106.86 Aligned_cols=147 Identities=15% Similarity=0.183 Sum_probs=105.6
Q ss_pred HHHHHHHhhcCCcEEEEeecCCCCHHHHHHHHhcCCcEEEEccC--CCcHHHHHHHHhCCCEEEEec--CCHHHHHHHHH
Q 020013 53 DLIRKTRSLTERPFGVGVVLAFPHNENIKAILSEKVAVLQVSWG--EYSEELVLEAHSAGVKVVPQV--GSFDEARKAVN 128 (332)
Q Consensus 53 ~~i~~~r~~~~~p~gvnl~~~~~~~~~~~~~~~~~~~~I~~~~g--~~~~~~i~~~~~~g~~v~~~v--~s~~~a~~a~~ 128 (332)
+.++++++.++.|+.+.++++++ .+.++.+.+.|+|.|++|.+ ..+.+.++.+++.|.+++..+ ++..+....+.
T Consensus 51 ~~i~~i~~~~~~~~~v~l~v~d~-~~~i~~~~~~gad~v~vh~~~~~~~~~~~~~~~~~g~~i~~~~~~~t~~e~~~~~~ 129 (220)
T 2fli_A 51 DVVASMRKHSKLVFDCHLMVVDP-ERYVEAFAQAGADIMTIHTESTRHIHGALQKIKAAGMKAGVVINPGTPATALEPLL 129 (220)
T ss_dssp HHHHHHHTTCCSEEEEEEESSSG-GGGHHHHHHHTCSEEEEEGGGCSCHHHHHHHHHHTTSEEEEEECTTSCGGGGGGGT
T ss_pred HHHHHHHHhCCCCEEEEEeecCH-HHHHHHHHHcCCCEEEEccCccccHHHHHHHHHHcCCcEEEEEcCCCCHHHHHHHH
Confidence 44666777777799999998765 34679999999999999853 334566788888898888777 45555555556
Q ss_pred cCCCEEEEecCCCCcccC-CCCchhhhHHHHHHHhC--CCCCcEEeecCcCCHHHHHHHHHcCcceeeeccccccC
Q 020013 129 AGVDAIIVQGREAGGHVI-GQDGLISLLPMVVDLIG--DRDIPIIAAGGIVDARGYVAALSLGAQGICLGTRFVAS 201 (332)
Q Consensus 129 ~g~D~ivv~G~eaGGh~~-~~~~~~~ll~~i~~~~~--~~~iPviaaGGI~~~~~v~~al~~GA~gV~~GT~fl~t 201 (332)
.++|+|++.+.+.|+... .....+..+.++++... ..++||+++||| +++++.+++.+|||+|.+||++..+
T Consensus 130 ~~~d~vl~~~~~~g~~g~~~~~~~~~~i~~~~~~~~~~~~~~~i~v~GGI-~~~~~~~~~~~Gad~vvvGsai~~~ 204 (220)
T 2fli_A 130 DLVDQVLIMTVNPGFGGQAFIPECLEKVATVAKWRDEKGLSFDIEVDGGV-DNKTIRACYEAGANVFVAGSYLFKA 204 (220)
T ss_dssp TTCSEEEEESSCTTCSSCCCCGGGHHHHHHHHHHHHHTTCCCEEEEESSC-CTTTHHHHHHHTCCEEEESHHHHTS
T ss_pred hhCCEEEEEEECCCCcccccCHHHHHHHHHHHHHHHhcCCCceEEEECcC-CHHHHHHHHHcCCCEEEEChHHhCC
Confidence 779999886655443210 11122344555554431 115899999999 5899999999999999999999876
|
| >3o07_A Pyridoxine biosynthesis protein SNZ1; (beta/alpha)8-barrel, pyridoxal 5-phosphate synthase, PLP G3 SNO1, biosynthetic protein; HET: 1GP; 1.80A {Saccharomyces cerevisiae} PDB: 3o06_A 3o05_A* 3fem_A | Back alignment and structure |
|---|
Probab=99.27 E-value=6.2e-11 Score=105.45 Aligned_cols=190 Identities=19% Similarity=0.269 Sum_probs=133.9
Q ss_pred CCCcHHHHHHHHhCCCceeecCC-------------CCCCHHHHHHHHHHHHhhcCCcEEEEeecCCCCHHHHHHHHhcC
Q 020013 21 DISGPELVAAVANAGGLGLLRAP-------------DWEAPDYLRDLIRKTRSLTERPFGVGVVLAFPHNENIKAILSEK 87 (332)
Q Consensus 21 g~s~~~la~avs~aGglG~i~~~-------------~~~~~e~~~~~i~~~r~~~~~p~gvnl~~~~~~~~~~~~~~~~~ 87 (332)
-+++++.|....++|...+.... ++.+|+. |+.+++..+.|+---.... +-...+.+.+.|
T Consensus 17 dv~~~eqa~iae~aGa~av~~l~~~p~d~r~~gGv~Rm~dp~~----I~~I~~aVsIPVm~k~rig--h~~EAqilea~G 90 (291)
T 3o07_A 17 DVVTPEQAKIAEKSGACAVMALESIPADMRKSGKVCRMSDPKM----IKDIMNSVSIPVMAKVRIG--HFVEAQIIEALE 90 (291)
T ss_dssp EESSHHHHHHHHHHTCSEEEECSSCHHHHHTTTCCCCCCCHHH----HHHHHTTCSSCEEEEEETT--CHHHHHHHHHTT
T ss_pred ecCCHHHHHHHHHhCchhhhhccCCCchhhhcCCccccCCHHH----HHHHHHhCCCCeEEEEecC--cHHHHHHHHHcC
Confidence 36899999988889987777542 1224544 5667777778865433332 234566777899
Q ss_pred CcEEEEccCCCcHHHHHHHH--hCCCEEEEecCCHHHHHHHHHcCCCEEEEecCCCCccc-------------------C
Q 020013 88 VAVLQVSWGEYSEELVLEAH--SAGVKVVPQVGSFDEARKAVNAGVDAIIVQGREAGGHV-------------------I 146 (332)
Q Consensus 88 ~~~I~~~~g~~~~~~i~~~~--~~g~~v~~~v~s~~~a~~a~~~g~D~ivv~G~eaGGh~-------------------~ 146 (332)
+|+|.-+-...|.+.+..++ +.++++++.+.+..||.++.+.|+|.|-..|.-+.|.. .
T Consensus 91 aD~IDesevltpad~~~~I~k~~f~vpfv~~~~~l~EAlrri~eGA~mIrTtge~gtg~v~~av~h~r~~~~~i~~l~g~ 170 (291)
T 3o07_A 91 VDYIDESEVLTPADWTHHIEKDKFKVPFVCGAKDLGEALRRINEGAAMIRTKGEAGTGDVSEAVKHIRRITEEIKACQQL 170 (291)
T ss_dssp CSEEEEETTSCCSCSSCCCCGGGCSSCEEEEESSHHHHHHHHHHTCSEEEECCCTTSCCTHHHHHHHHHHHHHHHHHHTC
T ss_pred CCEEecccCCCHHHHHHHhhhhcCCCcEEeeCCCHHHHHHHHHCCCCEEEecCcCCCccHHHHHHHHHHHHHHHHHHHcC
Confidence 99996653334444444433 35789999999999999999999999988765222211 0
Q ss_pred -C----------CCchhhhHHHHHHHhCCCCCcE--EeecCcCCHHHHHHHHHcCcceeeeccccccCccCC-CCHHHHH
Q 020013 147 -G----------QDGLISLLPMVVDLIGDRDIPI--IAAGGIVDARGYVAALSLGAQGICLGTRFVASEESY-AHPEYKR 212 (332)
Q Consensus 147 -~----------~~~~~~ll~~i~~~~~~~~iPv--iaaGGI~~~~~v~~al~~GA~gV~~GT~fl~t~Es~-~~~~~k~ 212 (332)
. ....|.++.++++.. ++|| |+.|||.+++++..++.+|||||++||+++.++... ....+++
T Consensus 171 ~t~~el~~~a~~~~ad~elI~~Ike~~---~IPVV~IAnGGI~TpedA~~~le~GaDGVmVGrAI~~s~DP~~~Akafv~ 247 (291)
T 3o07_A 171 KSEDDIAKVAEEMRVPVSLLKDVLEKG---KLPVVNFAAGGVATPADAALLMQLGCDGVFVGSGIFKSSNPVRLATAVVE 247 (291)
T ss_dssp CCHHHHHHHHHHHTSCHHHHHHHHHHT---SCSSCEEBCSSCCSHHHHHHHHHTTCSCEEECGGGGGSSCHHHHHHHHHH
T ss_pred CCHHHhhhcccccCCCHHHHHHHHHcc---CCCEEEecCCCCCCHHHHHHHHHhCCCEEEEchHHhCCCCHHHHHHHHHH
Confidence 0 024588888888876 7898 568999999999999999999999999999875421 2345555
Q ss_pred HHhcCCC
Q 020013 213 KLVEMDK 219 (332)
Q Consensus 213 ~~~~~~~ 219 (332)
++...++
T Consensus 248 Av~~~~~ 254 (291)
T 3o07_A 248 ATTHFDN 254 (291)
T ss_dssp HHHTTTC
T ss_pred HHHhccC
Confidence 5555544
|
| >2y88_A Phosphoribosyl isomerase A; aromatic amino acid biosynthesis, TIM-barrel, His biosynthesis, tryptophan biosynthesis; HET: 2ER; 1.33A {Mycobacterium tuberculosis} PDB: 2y89_A 2y85_A* | Back alignment and structure |
|---|
Probab=99.26 E-value=3.2e-11 Score=107.44 Aligned_cols=144 Identities=21% Similarity=0.246 Sum_probs=107.3
Q ss_pred HHHHHHHhhcCCcEEEEeecCCCCHHHHHHHHhcCCcEEEEccCC--CcHHHHHHHHhCCCEE--EEecC----------
Q 020013 53 DLIRKTRSLTERPFGVGVVLAFPHNENIKAILSEKVAVLQVSWGE--YSEELVLEAHSAGVKV--VPQVG---------- 118 (332)
Q Consensus 53 ~~i~~~r~~~~~p~gvnl~~~~~~~~~~~~~~~~~~~~I~~~~g~--~~~~~i~~~~~~g~~v--~~~v~---------- 118 (332)
+.++++++.++.|+-+|..+.. .+.++.+++.|+|.|.++... .|..+.+.++..|..+ ...+.
T Consensus 64 ~~i~~i~~~~~ipv~v~ggi~~--~~~~~~~l~~Gad~V~lg~~~l~~p~~~~~~~~~~g~~~~~~ld~~~~~~~~~v~~ 141 (244)
T 2y88_A 64 ELLAEVVGKLDVQVELSGGIRD--DESLAAALATGCARVNVGTAALENPQWCARVIGEHGDQVAVGLDVQIIDGEHRLRG 141 (244)
T ss_dssp HHHHHHHHHCSSEEEEESSCCS--HHHHHHHHHTTCSEEEECHHHHHCHHHHHHHHHHHGGGEEEEEEEEEETTEEEEEE
T ss_pred HHHHHHHHhcCCcEEEECCCCC--HHHHHHHHHcCCCEEEECchHhhChHHHHHHHHHcCCCEEEEEeccccCCCCEEEE
Confidence 6677787777899999887764 456888999999999987432 2323333344433222 22222
Q ss_pred ---------CHHHHHHHHHcCCCEEEEecCCCCcccCCCCchhhhHHHHHHHhCCCCCcEEeecCcCCHHHHHHHHHc--
Q 020013 119 ---------SFDEARKAVNAGVDAIIVQGREAGGHVIGQDGLISLLPMVVDLIGDRDIPIIAAGGIVDARGYVAALSL-- 187 (332)
Q Consensus 119 ---------s~~~a~~a~~~g~D~ivv~G~eaGGh~~~~~~~~~ll~~i~~~~~~~~iPviaaGGI~~~~~v~~al~~-- 187 (332)
..+.++.+.+.|+|.|++.+...+|+..+ ..+.++.++++.+ ++||++.|||.+++++.+++++
T Consensus 142 ~g~~~~~~~~~e~~~~~~~~G~~~i~~~~~~~~~~~~g--~~~~~~~~l~~~~---~ipvia~GGI~~~~d~~~~~~~~~ 216 (244)
T 2y88_A 142 RGWETDGGDLWDVLERLDSEGCSRFVVTDITKDGTLGG--PNLDLLAGVADRT---DAPVIASGGVSSLDDLRAIATLTH 216 (244)
T ss_dssp GGGTEEEEEHHHHHHHHHHTTCCCEEEEETTTTTTTSC--CCHHHHHHHHTTC---SSCEEEESCCCSHHHHHHHHTTGG
T ss_pred CCccCCCCCHHHHHHHHHhCCCCEEEEEecCCccccCC--CCHHHHHHHHHhC---CCCEEEECCCCCHHHHHHHHhhcc
Confidence 36778889999999999988776665312 3577888888765 7999999999999999999998
Q ss_pred -CcceeeeccccccCcc
Q 020013 188 -GAQGICLGTRFVASEE 203 (332)
Q Consensus 188 -GA~gV~~GT~fl~t~E 203 (332)
||++|++||+|+..+.
T Consensus 217 ~Gad~v~vG~al~~~~~ 233 (244)
T 2y88_A 217 RGVEGAIVGKALYARRF 233 (244)
T ss_dssp GTEEEEEECHHHHTTSS
T ss_pred CCCCEEEEcHHHHCCCc
Confidence 9999999999997654
|
| >1rd5_A Tryptophan synthase alpha chain, chloroplast; hydroxamic acid, diboa, dimboa, indole, indole-glycerol-PHOS lyase; 2.02A {Zea mays} SCOP: c.1.2.4 PDB: 1tjr_A | Back alignment and structure |
|---|
Probab=99.26 E-value=5.4e-11 Score=107.39 Aligned_cols=152 Identities=16% Similarity=0.116 Sum_probs=104.8
Q ss_pred CHHHHHHHHHHHHhhcCCcEEEEeecCCCCHHHHHHHHhcCCcEEEEccCC--CcHHHHHHHHhCCCEEEEec---CCHH
Q 020013 47 APDYLRDLIRKTRSLTERPFGVGVVLAFPHNENIKAILSEKVAVLQVSWGE--YSEELVLEAHSAGVKVVPQV---GSFD 121 (332)
Q Consensus 47 ~~e~~~~~i~~~r~~~~~p~gvnl~~~~~~~~~~~~~~~~~~~~I~~~~g~--~~~~~i~~~~~~g~~v~~~v---~s~~ 121 (332)
+++...+.++++|+.++.|+.++...+......++.+.+.|++.|+++... ...++++.+++.|++.+..+ ++.+
T Consensus 78 ~~~~~~~~i~~ir~~~~~Pv~~m~~~~~~~~~~~~~a~~aGadgv~v~d~~~~~~~~~~~~~~~~g~~~i~~~a~~t~~e 157 (262)
T 1rd5_A 78 TMDAVLEMLREVTPELSCPVVLLSYYKPIMFRSLAKMKEAGVHGLIVPDLPYVAAHSLWSEAKNNNLELVLLTTPAIPED 157 (262)
T ss_dssp CHHHHHHHHHHHGGGCSSCEEEECCSHHHHSCCTHHHHHTTCCEEECTTCBTTTHHHHHHHHHHTTCEECEEECTTSCHH
T ss_pred CHHHHHHHHHHHHhcCCCCEEEEecCcHHHHHHHHHHHHcCCCEEEEcCCChhhHHHHHHHHHHcCCceEEEECCCCCHH
Confidence 456667788889888888977653221100012344888999999886221 23467778888898755433 3455
Q ss_pred HHHHHHHcCCCEEEEecCCCCcccCC----CCchhhhHHHHHHHhCCCCCcEEeecCcCCHHHHHHHHHcCcceeeeccc
Q 020013 122 EARKAVNAGVDAIIVQGREAGGHVIG----QDGLISLLPMVVDLIGDRDIPIIAAGGIVDARGYVAALSLGAQGICLGTR 197 (332)
Q Consensus 122 ~a~~a~~~g~D~ivv~G~eaGGh~~~----~~~~~~ll~~i~~~~~~~~iPviaaGGI~~~~~v~~al~~GA~gV~~GT~ 197 (332)
.++.....+.+++.+... .|+++. ....+.+++++++.. ++||++.|||++++++.+++.+|||+|++||+
T Consensus 158 ~~~~~~~~~~g~v~~~s~--~G~tG~~~~~~~~~~~~i~~v~~~~---~~pI~vgGGI~~~e~~~~~~~~GAdgvvVGSa 232 (262)
T 1rd5_A 158 RMKEITKASEGFVYLVSV--NGVTGPRANVNPRVESLIQEVKKVT---NKPVAVGFGISKPEHVKQIAQWGADGVIIGSA 232 (262)
T ss_dssp HHHHHHHHCCSCEEEECS--SCCBCTTSCBCTHHHHHHHHHHHHC---SSCEEEESCCCSHHHHHHHHHTTCSEEEECHH
T ss_pred HHHHHHhcCCCeEEEecC--CCCCCCCcCCCchHHHHHHHHHhhc---CCeEEEECCcCCHHHHHHHHHcCCCEEEEChH
Confidence 556666666676765432 333211 123466888888876 79999999998899999999999999999999
Q ss_pred cccCcc
Q 020013 198 FVASEE 203 (332)
Q Consensus 198 fl~t~E 203 (332)
|+...|
T Consensus 233 i~~~~~ 238 (262)
T 1rd5_A 233 MVRQLG 238 (262)
T ss_dssp HHHHHH
T ss_pred HHhHHH
Confidence 998876
|
| >1tv5_A Dhodehase, dihydroorotate dehydrogenase homolog, mitochondri, dihydroorotate; alpha-beta barrel, TIM barrel, oxidoreductase; HET: A26 FMN ORO N8E; 2.40A {Plasmodium falciparum} SCOP: c.1.4.1 | Back alignment and structure |
|---|
Probab=99.25 E-value=8.4e-11 Score=113.20 Aligned_cols=89 Identities=22% Similarity=0.337 Sum_probs=68.9
Q ss_pred CCE-EEEecC---CHHH----HHHHHHcCCCEEEEecC------------CCCcccCCC---CchhhhHHHHHHHhCCCC
Q 020013 110 GVK-VVPQVG---SFDE----ARKAVNAGVDAIIVQGR------------EAGGHVIGQ---DGLISLLPMVVDLIGDRD 166 (332)
Q Consensus 110 g~~-v~~~v~---s~~~----a~~a~~~g~D~ivv~G~------------eaGGh~~~~---~~~~~ll~~i~~~~~~~~ 166 (332)
.++ |+.++. +.++ |+.+++.|+|+|++.|. +.||+. |. ...+.+++++++.+.. +
T Consensus 296 ~~P~V~vKispd~~~ed~~~iA~~~~~aGaDgI~v~ntt~~~~d~~~~~~~~GGlS-G~~~~~~sl~~i~~v~~~v~~-~ 373 (443)
T 1tv5_A 296 KKPLVFVKLAPDLNQEQKKEIADVLLETNIDGMIISNTTTQINDIKSFENKKGGVS-GAKLKDISTKFICEMYNYTNK-Q 373 (443)
T ss_dssp SCCEEEEEECSCCCHHHHHHHHHHHHHTTCSEEEECCCBSCCCCCGGGTTCCSEEE-EHHHHHHHHHHHHHHHHHTTT-C
T ss_pred CCCeEEEEeCCCCCHHHHHHHHHHHHHcCCCEEEEECCCcccccccccccccCCcC-CCcchHHHHHHHHHHHHHcCC-C
Confidence 456 676654 2233 67788999999999875 235554 22 1236778888887742 6
Q ss_pred CcEEeecCcCCHHHHHHHHHcCcceeeecccccc
Q 020013 167 IPIIAAGGIVDARGYVAALSLGAQGICLGTRFVA 200 (332)
Q Consensus 167 iPviaaGGI~~~~~v~~al~~GA~gV~~GT~fl~ 200 (332)
+|||+.|||.+++++.+++.+|||+|++||+|+.
T Consensus 374 iPVIg~GGI~s~~DA~e~l~aGAd~Vqigrall~ 407 (443)
T 1tv5_A 374 IPIIASGGIFSGLDALEKIEAGASVCQLYSCLVF 407 (443)
T ss_dssp SCEEEESSCCSHHHHHHHHHTTEEEEEESHHHHH
T ss_pred CcEEEECCCCCHHHHHHHHHcCCCEEEEcHHHHh
Confidence 9999999999999999999999999999999986
|
| >3vnd_A TSA, tryptophan synthase alpha chain; psychrophilic enzyme, cold adaptation; HET: PE8; 2.60A {Shewanella frigidimarina} | Back alignment and structure |
|---|
Probab=99.24 E-value=1.2e-10 Score=104.98 Aligned_cols=152 Identities=17% Similarity=0.190 Sum_probs=104.3
Q ss_pred HHHHHHHHHHHHhh-cCCcEEEEeecC----CCCHHHHHHHHhcCCcEEEEccCCCc---HHHHHHHHhCCCEEEEec--
Q 020013 48 PDYLRDLIRKTRSL-TERPFGVGVVLA----FPHNENIKAILSEKVAVLQVSWGEYS---EELVLEAHSAGVKVVPQV-- 117 (332)
Q Consensus 48 ~e~~~~~i~~~r~~-~~~p~gvnl~~~----~~~~~~~~~~~~~~~~~I~~~~g~~~---~~~i~~~~~~g~~v~~~v-- 117 (332)
.+.+-+.++++|+. ++.|+.+-...+ ...+.+++.+.+.|+|.+.++ ..++ .++.+.+++.|+..+..+
T Consensus 79 ~~~~~~~v~~ir~~~~~~Pivlm~Y~npv~~~g~e~f~~~~~~aGvdgvii~-Dlp~ee~~~~~~~~~~~gl~~i~liaP 157 (267)
T 3vnd_A 79 SSDCFDIITKVRAQHPDMPIGLLLYANLVFANGIDEFYTKAQAAGVDSVLIA-DVPVEESAPFSKAAKAHGIAPIFIAPP 157 (267)
T ss_dssp HHHHHHHHHHHHHHCTTCCEEEEECHHHHHHHCHHHHHHHHHHHTCCEEEET-TSCGGGCHHHHHHHHHTTCEEECEECT
T ss_pred HHHHHHHHHHHHhcCCCCCEEEEecCcHHHHhhHHHHHHHHHHcCCCEEEeC-CCCHhhHHHHHHHHHHcCCeEEEEECC
Confidence 34456777888876 678866532222 123667889999999999987 3333 367888899999866433
Q ss_pred -CCHHHHHHHHHcCCCEEEEecCC--CCcccCCCCchhhhHHHHHHHhCCCCCcEEeecCcCCHHHHHHHHHcCcceeee
Q 020013 118 -GSFDEARKAVNAGVDAIIVQGRE--AGGHVIGQDGLISLLPMVVDLIGDRDIPIIAAGGIVDARGYVAALSLGAQGICL 194 (332)
Q Consensus 118 -~s~~~a~~a~~~g~D~ivv~G~e--aGGh~~~~~~~~~ll~~i~~~~~~~~iPviaaGGI~~~~~v~~al~~GA~gV~~ 194 (332)
++.+.++...+.+.++|.+.... .|....-......++.++++.. ++||++.|||++++++.+++..|||||++
T Consensus 158 ~t~~eri~~i~~~~~gfvY~vS~~GvTG~~~~~~~~~~~~v~~vr~~~---~~pv~vGfGI~~~e~~~~~~~~gADgvVV 234 (267)
T 3vnd_A 158 NADADTLKMVSEQGEGYTYLLSRAGVTGTESKAGEPIENILTQLAEFN---APPPLLGFGIAEPEQVRAAIKAGAAGAIS 234 (267)
T ss_dssp TCCHHHHHHHHHHCCSCEEESCCCCCC--------CHHHHHHHHHTTT---CCCEEECSSCCSHHHHHHHHHTTCSEEEE
T ss_pred CCCHHHHHHHHHhCCCcEEEEecCCCCCCccCCcHHHHHHHHHHHHhc---CCCEEEECCcCCHHHHHHHHHcCCCEEEE
Confidence 35677777777766666652221 1221101223467788887765 79999999999999999899999999999
Q ss_pred ccccccCcc
Q 020013 195 GTRFVASEE 203 (332)
Q Consensus 195 GT~fl~t~E 203 (332)
||+|+..-|
T Consensus 235 GSaiv~~i~ 243 (267)
T 3vnd_A 235 GSAVVKIIE 243 (267)
T ss_dssp CHHHHHHHH
T ss_pred CHHHHHHHH
Confidence 999986544
|
| >3nav_A Tryptophan synthase alpha chain; alpha subunit, structural genomics, CSG center for structural genomics of infectious diseases; 2.10A {Vibrio cholerae o1 biovar el tor} SCOP: c.1.2.4 | Back alignment and structure |
|---|
Probab=99.24 E-value=9.2e-11 Score=105.98 Aligned_cols=151 Identities=20% Similarity=0.205 Sum_probs=104.6
Q ss_pred HHHHHHHHHHHhh-cCCcEEEE----eecCCCCHHHHHHHHhcCCcEEEEccCCCc---HHHHHHHHhCCCEEEEec---
Q 020013 49 DYLRDLIRKTRSL-TERPFGVG----VVLAFPHNENIKAILSEKVAVLQVSWGEYS---EELVLEAHSAGVKVVPQV--- 117 (332)
Q Consensus 49 e~~~~~i~~~r~~-~~~p~gvn----l~~~~~~~~~~~~~~~~~~~~I~~~~g~~~---~~~i~~~~~~g~~v~~~v--- 117 (332)
+.+-+.++++|+. .+.|+.+- .+.....+.+++.+.+.|+|.+.+. +.++ .++.+.+++.|+..+..+
T Consensus 82 ~~~~~~v~~~r~~~~~~Pivlm~Y~n~v~~~g~~~f~~~~~~aGvdGvIip-Dlp~ee~~~~~~~~~~~gl~~I~lvap~ 160 (271)
T 3nav_A 82 DICFELIAQIRARNPETPIGLLMYANLVYARGIDDFYQRCQKAGVDSVLIA-DVPTNESQPFVAAAEKFGIQPIFIAPPT 160 (271)
T ss_dssp HHHHHHHHHHHHHCTTSCEEEEECHHHHHHTCHHHHHHHHHHHTCCEEEET-TSCGGGCHHHHHHHHHTTCEEEEEECTT
T ss_pred HHHHHHHHHHHhcCCCCCEEEEecCcHHHHHhHHHHHHHHHHCCCCEEEEC-CCCHHHHHHHHHHHHHcCCeEEEEECCC
Confidence 3445677888875 67888763 2222334678899999999998886 3333 357778889998755433
Q ss_pred CCHHHHHHHHHcCCCEEEEecC-CCCcccCC-CCchhhhHHHHHHHhCCCCCcEEeecCcCCHHHHHHHHHcCcceeeec
Q 020013 118 GSFDEARKAVNAGVDAIIVQGR-EAGGHVIG-QDGLISLLPMVVDLIGDRDIPIIAAGGIVDARGYVAALSLGAQGICLG 195 (332)
Q Consensus 118 ~s~~~a~~a~~~g~D~ivv~G~-eaGGh~~~-~~~~~~ll~~i~~~~~~~~iPviaaGGI~~~~~v~~al~~GA~gV~~G 195 (332)
++.+.++...+.+.++|.+... .-.|.... +.....++.++++.. ++||++.+||++++++.+++..|||||++|
T Consensus 161 t~~eri~~i~~~~~gfiY~vs~~GvTG~~~~~~~~~~~~v~~vr~~~---~~Pv~vGfGIst~e~~~~~~~~gADgvIVG 237 (271)
T 3nav_A 161 ASDETLRAVAQLGKGYTYLLSRAGVTGAETKANMPVHALLERLQQFD---APPALLGFGISEPAQVKQAIEAGAAGAISG 237 (271)
T ss_dssp CCHHHHHHHHHHCCSCEEECCCC--------CCHHHHHHHHHHHHTT---CCCEEECSSCCSHHHHHHHHHTTCSEEEES
T ss_pred CCHHHHHHHHHHCCCeEEEEeccCCCCcccCCchhHHHHHHHHHHhc---CCCEEEECCCCCHHHHHHHHHcCCCEEEEC
Confidence 3567777777777777765322 11222111 122456788887765 799999999999999998999999999999
Q ss_pred cccccCcc
Q 020013 196 TRFVASEE 203 (332)
Q Consensus 196 T~fl~t~E 203 (332)
|+|+..-|
T Consensus 238 SAiv~~i~ 245 (271)
T 3nav_A 238 SAVVKIIE 245 (271)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 99986544
|
| >3ctl_A D-allulose-6-phosphate 3-epimerase; D-glucitol 6-phosphate, (beta/alpha)8 barrel, carbohydrate metabolism, isomerase; HET: S6P; 2.20A {Escherichia coli} PDB: 3ct7_A* | Back alignment and structure |
|---|
Probab=99.24 E-value=6.5e-11 Score=104.74 Aligned_cols=146 Identities=15% Similarity=0.171 Sum_probs=110.1
Q ss_pred HHHHHHHhhcCCcEEEEeecCCCCHHHHHHHHhcCCcEEEEccCC---CcHHHHHHHHhCCCEEEEecC--CHHHHHHHH
Q 020013 53 DLIRKTRSLTERPFGVGVVLAFPHNENIKAILSEKVAVLQVSWGE---YSEELVLEAHSAGVKVVPQVG--SFDEARKAV 127 (332)
Q Consensus 53 ~~i~~~r~~~~~p~gvnl~~~~~~~~~~~~~~~~~~~~I~~~~g~---~~~~~i~~~~~~g~~v~~~v~--s~~~a~~a~ 127 (332)
..++.+|+.++.|+-+.+++.+| ..+++.+.++|+|.|++|... .+.+.++.+++.|+++...+. ++.+....+
T Consensus 47 ~~v~~lr~~~~~~~dvhLmv~dp-~~~i~~~~~aGAd~itvh~Ea~~~~~~~~i~~i~~~G~k~gv~lnp~tp~~~~~~~ 125 (231)
T 3ctl_A 47 FFVSQVKKLATKPLDCHLMVTRP-QDYIAQLARAGADFITLHPETINGQAFRLIDEIRRHDMKVGLILNPETPVEAMKYY 125 (231)
T ss_dssp HHHHHHHTTCCSCEEEEEESSCG-GGTHHHHHHHTCSEEEECGGGCTTTHHHHHHHHHHTTCEEEEEECTTCCGGGGTTT
T ss_pred HHHHHHHhccCCcEEEEEEecCH-HHHHHHHHHcCCCEEEECcccCCccHHHHHHHHHHcCCeEEEEEECCCcHHHHHHH
Confidence 35778888888999999999876 567899999999999998543 356788899999999876553 444444444
Q ss_pred HcCCCEEEEecC--CCCcccCCCCchhhhHHHHHHHhC--CCCCcEEeecCcCCHHHHHHHHHcCcceeeec-cccccC
Q 020013 128 NAGVDAIIVQGR--EAGGHVIGQDGLISLLPMVVDLIG--DRDIPIIAAGGIVDARGYVAALSLGAQGICLG-TRFVAS 201 (332)
Q Consensus 128 ~~g~D~ivv~G~--eaGGh~~~~~~~~~ll~~i~~~~~--~~~iPviaaGGI~~~~~v~~al~~GA~gV~~G-T~fl~t 201 (332)
..++|.|++-.. ..||... ....+..+.++++... +.+++|.+.||| +.+++..+..+|||.+++| |+++.+
T Consensus 126 l~~~D~VlvmsV~pGfggQ~f-~~~~l~kI~~lr~~~~~~~~~~~I~VdGGI-~~~~~~~~~~aGAd~~V~G~saif~~ 202 (231)
T 3ctl_A 126 IHKADKITVMTVDPGFAGQPF-IPEMLDKLAELKAWREREGLEYEIEVDGSC-NQATYEKLMAAGADVFIVGTSGLFNH 202 (231)
T ss_dssp GGGCSEEEEESSCTTCSSCCC-CTTHHHHHHHHHHHHHHHTCCCEEEEESCC-STTTHHHHHHHTCCEEEECTTTTGGG
T ss_pred HhcCCEEEEeeeccCcCCccc-cHHHHHHHHHHHHHHhccCCCceEEEECCc-CHHHHHHHHHcCCCEEEEccHHHhCC
Confidence 458999987443 3445442 2345666777666542 125899999999 7899999999999999999 888764
|
| >3i65_A Dihydroorotate dehydrogenase homolog, mitochondrial; triazolopyrimidine,inhibitor, DSM1, FAD, flavoprotein, membrane, mitochondrion; HET: JZ8 FMN ORO LDA; 2.00A {Plasmodium falciparum 3D7} PDB: 3i68_A* 3i6r_A* 3o8a_A* 3sfk_A* | Back alignment and structure |
|---|
Probab=99.23 E-value=9.8e-11 Score=111.42 Aligned_cols=137 Identities=18% Similarity=0.248 Sum_probs=95.9
Q ss_pred CCcEEEEeecCCC----CHHHHHHH--HhcCCcEEEEccCCCc----------H---HHHHHHHhC--------------
Q 020013 63 ERPFGVGVVLAFP----HNENIKAI--LSEKVAVLQVSWGEYS----------E---ELVLEAHSA-------------- 109 (332)
Q Consensus 63 ~~p~gvnl~~~~~----~~~~~~~~--~~~~~~~I~~~~g~~~----------~---~~i~~~~~~-------------- 109 (332)
..|+++|+..+.. .+++++.+ +..-+|+|.++.++|. . ++++.+++.
T Consensus 181 ~~~vgvnIg~nk~t~~~~~Dy~~~a~~l~~~ad~ieiNiScPNt~Gl~~lq~~~~l~~ll~aV~~~~~~~~~~~~~~~~~ 260 (415)
T 3i65_A 181 KHIVGVSIGKNKDTVNIVDDLKYCINKIGRYADYIAINVSSPNTPGLRDNQEAGKLKNIILSVKEEIDNLEKNNIMNDEF 260 (415)
T ss_dssp TCEEEEEECCCTTCSCHHHHHHHHHHHHGGGCSEEEEECCCCC--------CCHHHHHHHHHHHHHHHHHHHHCCSCHHH
T ss_pred CceEEEEeccccCccccHHHHHHHHHHHHhhCCEEEEECCCCCCCCcccccCHHHHHHHHHHHHHHHHhhcccccccccc
Confidence 4679999977652 13343322 2234899999877642 1 334444432
Q ss_pred -------CCE-EEEecC---C----HHHHHHHHHcCCCEEEEecCC------------CCcccCCC---CchhhhHHHHH
Q 020013 110 -------GVK-VVPQVG---S----FDEARKAVNAGVDAIIVQGRE------------AGGHVIGQ---DGLISLLPMVV 159 (332)
Q Consensus 110 -------g~~-v~~~v~---s----~~~a~~a~~~g~D~ivv~G~e------------aGGh~~~~---~~~~~ll~~i~ 159 (332)
.++ |+.++. + .+.|+.+++.|+|+|++.|+. .||.. |. ...+..+++++
T Consensus 261 ~~~~~~~~~P~V~VKi~pd~~~~~i~~iA~~a~~aGaDgIiv~Ntt~~r~dl~~~~~~~GGlS-G~a~~p~al~~I~~v~ 339 (415)
T 3i65_A 261 LWFNTTKKKPLVFVKLAPDLNQEQKKEIADVLLETNIDGMIISNTTTQINDIKSFENKKGGVS-GAKLKDISTKFICEMY 339 (415)
T ss_dssp HCCSSSSSCCEEEEEECSCCCHHHHHHHHHHHHHHTCSEEEECCCBSCCCCCGGGTTCCSEEE-EGGGHHHHHHHHHHHH
T ss_pred cccccCCCCCeEEEEecCCCCHHHHHHHHHHHHHcCCcEEEEeCCCcccccccccccccCCcC-CccchHHHHHHHHHHH
Confidence 467 776654 2 234667889999999998753 35553 22 12467888888
Q ss_pred HHhCCCCCcEEeecCcCCHHHHHHHHHcCcceeeeccccccC
Q 020013 160 DLIGDRDIPIIAAGGIVDARGYVAALSLGAQGICLGTRFVAS 201 (332)
Q Consensus 160 ~~~~~~~iPviaaGGI~~~~~v~~al~~GA~gV~~GT~fl~t 201 (332)
+.+.. ++|||+.|||.+++|+.+++.+|||+|++||+|+..
T Consensus 340 ~~v~~-~iPIIg~GGI~s~eDa~e~l~aGAd~VqIgra~l~~ 380 (415)
T 3i65_A 340 NYTNK-QIPIIASGGIFSGLDALEKIEAGASVCQLYSCLVFN 380 (415)
T ss_dssp HHTTT-CSCEEECSSCCSHHHHHHHHHHTEEEEEESHHHHHH
T ss_pred HHhCC-CCCEEEECCCCCHHHHHHHHHcCCCEEEEcHHHHhc
Confidence 88743 699999999999999999999999999999999854
|
| >1xm3_A Thiazole biosynthesis protein THIG; structural genomics, protein structure initiative, PSI, NESG, northeast structural genomics consortium; 1.80A {Bacillus subtilis} SCOP: c.1.31.1 PDB: 1tyg_A | Back alignment and structure |
|---|
Probab=99.22 E-value=6.4e-11 Score=107.04 Aligned_cols=198 Identities=17% Similarity=0.125 Sum_probs=119.4
Q ss_pred CccceecCCCCCCCCcH-HHHHHHHhCCCce-eecCCCCCCH--HHHHHHHHHHHhhcCCcEEEEeecCCCCHH---HHH
Q 020013 9 FEYGIVQAPLGPDISGP-ELVAAVANAGGLG-LLRAPDWEAP--DYLRDLIRKTRSLTERPFGVGVVLAFPHNE---NIK 81 (332)
Q Consensus 9 ~~~Pii~apM~~g~s~~-~la~avs~aGglG-~i~~~~~~~~--e~~~~~i~~~r~~~~~p~gvnl~~~~~~~~---~~~ 81 (332)
++.|+|.|.-+ ..++ ++..++.++|.-- .++.++ .++ ..+...++.+++. +.++-.|.......++ ..+
T Consensus 11 ~~~~~~~~t~g--~p~~~~~~~~l~~~Gad~ielg~pr-~~~~g~~~~~~~~~l~~~-~~~~~pn~~~~~~~~~~~~f~~ 86 (264)
T 1xm3_A 11 FQSRLLLGTGK--YPSFDIQKEAVAVSESDILTFAVRR-MNIFEASQPNFLEQLDLS-KYTLLPNTAGASTAEEAVRIAR 86 (264)
T ss_dssp ESCCEEEECSC--SSCHHHHHHHHHHHTCSEEEEETTS-STTC-------CTTCCGG-GSEEEEECTTCSSHHHHHHHHH
T ss_pred ecCCCEEEecC--CCCHHHHHHHHHHcCCeEEEEcccc-cccCCCCHHHHHHHHHhc-CCeEcCCccccCCHHHHHHHHH
Confidence 57899987753 4444 5666676666311 222221 122 1223333333322 3344456543222232 345
Q ss_pred HHHhc-CCcEEEEc-cCCC------cHHHHHHHHhC---CCEEE-EecCCHHHHHHHHHcCCCEEEEecCCCCcccCCCC
Q 020013 82 AILSE-KVAVLQVS-WGEY------SEELVLEAHSA---GVKVV-PQVGSFDEARKAVNAGVDAIIVQGREAGGHVIGQD 149 (332)
Q Consensus 82 ~~~~~-~~~~I~~~-~g~~------~~~~i~~~~~~---g~~v~-~~v~s~~~a~~a~~~g~D~ivv~G~eaGGh~~~~~ 149 (332)
.+.+. +.++|.+. .++. ..++++.+++. |+.++ ..+.+.++++++.+.|+|+|+..+...|... + .
T Consensus 87 ~a~~agg~~~i~l~i~~d~~~~~~e~~~~~~~a~~~~~~g~~vi~~~~~~~~~a~~~~~~gad~v~~~~~~~Gt~~-~-~ 164 (264)
T 1xm3_A 87 LAKASGLCDMIKVEVIGCSRSLLPDPVETLKASEQLLEEGFIVLPYTSDDVVLARKLEELGVHAIMPGASPIGSGQ-G-I 164 (264)
T ss_dssp HHHHTTCCSSEEECCBCCTTTCCBCHHHHHHHHHHHHHTTCCEEEEECSCHHHHHHHHHHTCSCBEECSSSTTCCC-C-C
T ss_pred HHHHcCCCCeEEEeecCCCcccccchHHHHHHHHHHHCCCeEEEEEcCCCHHHHHHHHHhCCCEEEECCcccCCCC-C-C
Confidence 55554 45666553 2222 23677777776 88888 5567889999999999999965444333222 1 1
Q ss_pred chhhhHHHHHHHhCCCCCcEEeecCcCCHHHHHHHHHcCcceeeeccccccCccC-CCCHHHHHHHh
Q 020013 150 GLISLLPMVVDLIGDRDIPIIAAGGIVDARGYVAALSLGAQGICLGTRFVASEES-YAHPEYKRKLV 215 (332)
Q Consensus 150 ~~~~ll~~i~~~~~~~~iPviaaGGI~~~~~v~~al~~GA~gV~~GT~fl~t~Es-~~~~~~k~~~~ 215 (332)
....+++.+++.. ++||++.|||.+++++.+++++|||||++||+|+.+.+. .....+++.+.
T Consensus 165 ~~~~~l~~i~~~~---~iPviv~gGI~t~eda~~~~~~GAdgViVGSAi~~a~dp~~~~~~l~~~v~ 228 (264)
T 1xm3_A 165 LNPLNLSFIIEQA---KVPVIVDAGIGSPKDAAYAMELGADGVLLNTAVSGADDPVKMARAMKLAVE 228 (264)
T ss_dssp SCHHHHHHHHHHC---SSCBEEESCCCSHHHHHHHHHTTCSEEEESHHHHTSSSHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHhcC---CCCEEEEeCCCCHHHHHHHHHcCCCEEEEcHHHhCCCCHHHHHHHHHHHHH
Confidence 2366788887755 799999999999999999999999999999999976542 12334444443
|
| >1thf_D HISF protein; thermophIle, TIM-barrel, histidine biosynthesis, lyase, phosphate-binding sites; 1.45A {Thermotoga maritima} SCOP: c.1.2.1 PDB: 2wjz_A 2a0n_A* 1gpw_A 1vh7_A 2rkx_A 3iio_A 3iip_A* 3iiv_A | Back alignment and structure |
|---|
Probab=99.22 E-value=4.7e-10 Score=100.40 Aligned_cols=172 Identities=20% Similarity=0.205 Sum_probs=117.0
Q ss_pred cHHHHHHHHhCCC--ceeecCC-CCCCHHHHHHHHHHHHhhcCCcEEEEeecCCCCHHHHHHHHhcCCcEEEEccCC--C
Q 020013 24 GPELVAAVANAGG--LGLLRAP-DWEAPDYLRDLIRKTRSLTERPFGVGVVLAFPHNENIKAILSEKVAVLQVSWGE--Y 98 (332)
Q Consensus 24 ~~~la~avs~aGg--lG~i~~~-~~~~~e~~~~~i~~~r~~~~~p~gvnl~~~~~~~~~~~~~~~~~~~~I~~~~g~--~ 98 (332)
..+++.+..++|. +-+.... .........+.++++++.++.|+-++-.+.. .+.++.+++.|+|.|.++... .
T Consensus 32 ~~~~a~~~~~~Gad~i~v~d~~~~~~~~~~~~~~i~~i~~~~~ipvi~~ggI~~--~~~~~~~~~~Gad~V~lg~~~l~~ 109 (253)
T 1thf_D 32 PVELGKFYSEIGIDELVFLDITASVEKRKTMLELVEKVAEQIDIPFTVGGGIHD--FETASELILRGADKVSINTAAVEN 109 (253)
T ss_dssp HHHHHHHHHHTTCCEEEEEESSCSSSHHHHHHHHHHHHHTTCCSCEEEESSCCS--HHHHHHHHHTTCSEEEESHHHHHC
T ss_pred HHHHHHHHHHcCCCEEEEECCchhhcCCcccHHHHHHHHHhCCCCEEEeCCCCC--HHHHHHHHHcCCCEEEEChHHHhC
Confidence 3467777777664 2222211 1111223345667777777889988877654 466888889999999986321 2
Q ss_pred cHHHHHHHHhCCC---EEEEec--------------------CCHHHHHHHHHcCCCEEEEecCCCCcccCCCCchhhhH
Q 020013 99 SEELVLEAHSAGV---KVVPQV--------------------GSFDEARKAVNAGVDAIIVQGREAGGHVIGQDGLISLL 155 (332)
Q Consensus 99 ~~~~i~~~~~~g~---~v~~~v--------------------~s~~~a~~a~~~g~D~ivv~G~eaGGh~~~~~~~~~ll 155 (332)
|..+.+..+..|. .+...+ +..+.++.+.+.|+|.|++.+....|+..+ ..+.++
T Consensus 110 p~~~~~~~~~~g~~~i~~~~~~~~~~g~~~v~~~g~~~~~~~~~~e~~~~~~~~G~~~i~~~~~~~~g~~~g--~~~~~~ 187 (253)
T 1thf_D 110 PSLITQIAQTFGSQAVVVAIDAKRVDGEFMVFTYSGKKNTGILLRDWVVEVEKRGAGEILLTSIDRDGTKSG--YDTEMI 187 (253)
T ss_dssp THHHHHHHHHHCGGGEEEEEEEEEETTEEEEEETTTTEEEEEEHHHHHHHHHHTTCSEEEEEETTTTTSCSC--CCHHHH
T ss_pred hHHHHHHHHHcCCCcEEEEEEEEccCCcEEEEECCCccccCCCHHHHHHHHHHCCCCEEEEEeccCCCCCCC--CCHHHH
Confidence 3323333344342 233333 234667889999999999987655554322 247788
Q ss_pred HHHHHHhCCCCCcEEeecCcCCHHHHHHHHHcCcceeeeccccccCc
Q 020013 156 PMVVDLIGDRDIPIIAAGGIVDARGYVAALSLGAQGICLGTRFVASE 202 (332)
Q Consensus 156 ~~i~~~~~~~~iPviaaGGI~~~~~v~~al~~GA~gV~~GT~fl~t~ 202 (332)
.++++.+ ++||++.|||.+++++.+++.+||++|++||+|+..+
T Consensus 188 ~~l~~~~---~ipvia~GGI~~~~d~~~~~~~Gadgv~vGsal~~~~ 231 (253)
T 1thf_D 188 RFVRPLT---TLPIIASGGAGKMEHFLEAFLAGADAALAASVFHFRE 231 (253)
T ss_dssp HHHGGGC---CSCEEEESCCCSHHHHHHHHHTTCSEEEESHHHHTTC
T ss_pred HHHHHhc---CCCEEEECCCCCHHHHHHHHHcCChHHHHHHHHHcCC
Confidence 8888765 7999999999999999999999999999999999754
|
| >4ef8_A Dihydroorotate dehydrogenase; phenyl isothiocyanate, PYRD, oxidoreductase, oxidoreductase-oxidor inhibitor complex; HET: FMN; 1.56A {Leishmania major} PDB: 3gye_A* 3gz3_A* 4ef9_A* 3tro_A* 3tjx_A* | Back alignment and structure |
|---|
Probab=99.22 E-value=8.3e-11 Score=110.28 Aligned_cols=191 Identities=15% Similarity=0.143 Sum_probs=123.3
Q ss_pred hhcC--CccceecCCCCCCCCcHHHHHHHHhCCCceeecCC---------C-----------------C--CCHHHHHHH
Q 020013 5 GMLG--FEYGIVQAPLGPDISGPELVAAVANAGGLGLLRAP---------D-----------------W--EAPDYLRDL 54 (332)
Q Consensus 5 ~~l~--~~~Pii~apM~~g~s~~~la~avs~aGglG~i~~~---------~-----------------~--~~~e~~~~~ 54 (332)
+++| ++.||+.+.=. .-.+.+....+..+| +|++..+ + + ...+.+.+.
T Consensus 40 ~~~Gl~~~NPv~lAAG~-~~~~~e~~~~l~~~G-~G~v~~ktvt~~pq~GNp~PR~~~~~~~~iN~~G~~n~G~~~~~~~ 117 (354)
T 4ef8_A 40 NLLNNTFANPFMNAAGV-MCTTTEELVAMTESA-SGSLVSKSCTPALREGNPTPRYQALPLGSINSMGLPNNGFDFYLAY 117 (354)
T ss_dssp EETTEEESSSEEECTTS-SCSSHHHHHHHHHSS-CSCEEEEEECSSCBCCSCSCCEEEETTEEEECCCCCBCCHHHHHHH
T ss_pred EECCEECCCCCEeccCC-CCCCHHHHHHHHHcC-CCeEEeCcccCcccCCCCCCcEEecchhhhccCCCCCcCHHHHHHH
Confidence 3445 57899977643 225788888888775 5555211 0 0 123444444
Q ss_pred HHHHHhhcCCcEEEEeecCCCCHHHH---HHHH---hcCCcEEEEccCCC-----------cH---HHHHHHHh-CCCEE
Q 020013 55 IRKTRSLTERPFGVGVVLAFPHNENI---KAIL---SEKVAVLQVSWGEY-----------SE---ELVLEAHS-AGVKV 113 (332)
Q Consensus 55 i~~~r~~~~~p~gvnl~~~~~~~~~~---~~~~---~~~~~~I~~~~g~~-----------~~---~~i~~~~~-~g~~v 113 (332)
+++.++..+.|+++|++...+ +++. +.+. +.++|+|.+++++| ++ ++++.+++ ..++|
T Consensus 118 l~~~~~~~~~pvivsI~G~~~-~d~~~~a~~l~~~~~~g~d~ielNisCPn~~gg~~l~~~~e~~~~il~av~~~~~~PV 196 (354)
T 4ef8_A 118 AAEQHDYGKKPLFLSMSGLSM-RENVEMCKRLAAVATEKGVILELNLSCPNVPGKPQVAYDFDAMRQCLTAVSEVYPHSF 196 (354)
T ss_dssp HHHTCCTTTCCEEEEECCSSH-HHHHHHHHHHHHHHHHHCCEEEEECSSCCSTTSCCGGGSHHHHHHHHHHHHHHCCSCE
T ss_pred HHHHhhcCCCcEEEEeccCCH-HHHHHHHHHHhhhhhcCCCEEEEeCCCCCCCCchhhccCHHHHHHHHHHHHHhhCCCe
Confidence 444433346899999987554 3333 3333 35789999987753 12 34444554 46888
Q ss_pred EEecC---CHHHH----HHHHHcC-CCEEEEecC--------------------CCCcccCCC---CchhhhHHHHHHHh
Q 020013 114 VPQVG---SFDEA----RKAVNAG-VDAIIVQGR--------------------EAGGHVIGQ---DGLISLLPMVVDLI 162 (332)
Q Consensus 114 ~~~v~---s~~~a----~~a~~~g-~D~ivv~G~--------------------eaGGh~~~~---~~~~~ll~~i~~~~ 162 (332)
+.++. +.++. ..+.+.| +|+|++.++ +.||.. |+ ...+..+.++++..
T Consensus 197 ~vKi~p~~d~~~~~~~a~~~~~~Gg~d~I~~~NT~~~g~~idi~~~~~~~~~~~~~gGlS-G~~i~p~a~~~i~~v~~~~ 275 (354)
T 4ef8_A 197 GVKMPPYFDFAHFDAAAEILNEFPKVQFITCINSIGNGLVIDAETESVVIKPKQGFGGLG-GRYVLPTALANINAFYRRC 275 (354)
T ss_dssp EEEECCCCSHHHHHHHHHHHHTCTTEEEEEECCCEEEEECEETTTTEESCSGGGGEEEEE-GGGGHHHHHHHHHHHHHHC
T ss_pred EEEecCCCCHHHHHHHHHHHHhCCCccEEEEecccCcceeeeccCCccccccccccCCCC-CCCCchHHHHHHHHHHHhC
Confidence 87765 33332 2334677 999987432 123332 22 12477788888874
Q ss_pred CCCCCcEEeecCcCCHHHHHHHHHcCcceeeeccccccC
Q 020013 163 GDRDIPIIAAGGIVDARGYVAALSLGAQGICLGTRFVAS 201 (332)
Q Consensus 163 ~~~~iPviaaGGI~~~~~v~~al~~GA~gV~~GT~fl~t 201 (332)
. ++|||+.|||.+++|+.+++.+|||+|++||+++..
T Consensus 276 ~--~ipII~~GGI~s~~da~~~l~aGAd~V~vgra~l~~ 312 (354)
T 4ef8_A 276 P--GKLIFGCGGVYTGEDAFLHVLAGASMVQVGTALQEE 312 (354)
T ss_dssp T--TSEEEEESCCCSHHHHHHHHHHTEEEEEECHHHHHH
T ss_pred C--CCCEEEECCcCCHHHHHHHHHcCCCEEEEhHHHHHh
Confidence 2 699999999999999999999999999999999864
|
| >3zwt_A Dihydroorotate dehydrogenase (quinone), mitochond; oxidoreductase; HET: FMN ORO KFZ; 1.55A {Homo sapiens} PDB: 1d3h_A* 2bxv_A* 2prh_A* 2prl_A* 2prm_A* 3f1q_A* 3fj6_A* 3fjl_A* 3g0u_A* 3g0x_A* 3zws_A* 1d3g_A* 3u2o_A* 2fpv_A* 2fpt_A* 2fpy_A* 2fqi_A* 3kvl_A* 3kvk_A* 3kvj_A* ... | Back alignment and structure |
|---|
Probab=99.22 E-value=1.6e-10 Score=108.92 Aligned_cols=136 Identities=19% Similarity=0.244 Sum_probs=97.0
Q ss_pred CCcEEEEeecCCC----CHHHHHHHHh--cCCcEEEEccCCCc-------------HHHHHHHHh--------CCCEEEE
Q 020013 63 ERPFGVGVVLAFP----HNENIKAILS--EKVAVLQVSWGEYS-------------EELVLEAHS--------AGVKVVP 115 (332)
Q Consensus 63 ~~p~gvnl~~~~~----~~~~~~~~~~--~~~~~I~~~~g~~~-------------~~~i~~~~~--------~g~~v~~ 115 (332)
+.|+++|+..+.. .+++++.+.. ..+|+|.++.++|. .++++.+++ ..++|+.
T Consensus 146 ~~pv~vniggn~~t~~~~~dy~~~~~~~~~~ad~ielNisCPn~~G~~~l~~~~~l~~ll~av~~~~~~~~~~~~~Pv~v 225 (367)
T 3zwt_A 146 GLPLGVNLGKNKTSVDAAEDYAEGVRVLGPLADYLVVNVSSPNTAGLRSLQGKAELRRLLTKVLQERDGLRRVHRPAVLV 225 (367)
T ss_dssp TCCEEEEECCCTTCSCHHHHHHHHHHHHGGGCSEEEEECCCTTSTTGGGGGSHHHHHHHHHHHHHHHHTSCGGGCCEEEE
T ss_pred CceEEEEEecCCCCCcCHHHHHHHHHHHhhhCCEEEEECCCCCCCCccccCCHHHHHHHHHHHHHHHhhccccCCceEEE
Confidence 5799999977531 1344443332 35899999888752 134444443 4678887
Q ss_pred ecC---CH----HHHHHHHHcCCCEEEEecCC--------------CCcccCCC-C--chhhhHHHHHHHhCCCCCcEEe
Q 020013 116 QVG---SF----DEARKAVNAGVDAIIVQGRE--------------AGGHVIGQ-D--GLISLLPMVVDLIGDRDIPIIA 171 (332)
Q Consensus 116 ~v~---s~----~~a~~a~~~g~D~ivv~G~e--------------aGGh~~~~-~--~~~~ll~~i~~~~~~~~iPvia 171 (332)
++. +. +.++.++++|+|+|++.++. .||.. |. . ..+..+.++++.++. ++|||+
T Consensus 226 Ki~p~~~~~~~~~ia~~~~~aGadgi~v~ntt~~r~~~~~~~~~~~~gGlS-G~~i~p~a~~~v~~i~~~v~~-~ipvI~ 303 (367)
T 3zwt_A 226 KIAPDLTSQDKEDIASVVKELGIDGLIVTNTTVSRPAGLQGALRSETGGLS-GKPLRDLSTQTIREMYALTQG-RVPIIG 303 (367)
T ss_dssp EECSCCCHHHHHHHHHHHHHHTCCEEEECCCBSCCCTTCCCTTTTSSSEEE-EGGGHHHHHHHHHHHHHHTTT-CSCEEE
T ss_pred EeCCCCCHHHHHHHHHHHHHcCCCEEEEeCCCcccccccccccccccCCcC-CcccchhHHHHHHHHHHHcCC-CceEEE
Confidence 765 22 34567789999999997653 24443 22 1 235778888888743 699999
Q ss_pred ecCcCCHHHHHHHHHcCcceeeecccccc
Q 020013 172 AGGIVDARGYVAALSLGAQGICLGTRFVA 200 (332)
Q Consensus 172 aGGI~~~~~v~~al~~GA~gV~~GT~fl~ 200 (332)
.|||.+++++.+++.+|||+|++||+++.
T Consensus 304 ~GGI~s~~da~~~l~~GAd~V~vgra~l~ 332 (367)
T 3zwt_A 304 VGGVSSGQDALEKIRAGASLVQLYTALTF 332 (367)
T ss_dssp ESSCCSHHHHHHHHHHTCSEEEESHHHHH
T ss_pred ECCCCCHHHHHHHHHcCCCEEEECHHHHh
Confidence 99999999999999999999999999974
|
| >3ovp_A Ribulose-phosphate 3-epimerase; iron binding, isomerase; HET: XPE; 1.70A {Homo sapiens} SCOP: c.1.2.0 PDB: 3ovq_A* 3ovr_A* 3qc3_A | Back alignment and structure |
|---|
Probab=99.22 E-value=1e-10 Score=103.39 Aligned_cols=143 Identities=17% Similarity=0.243 Sum_probs=105.9
Q ss_pred HHHHHHhh--cCCcEEEEeecCCCCHHHHHHHHhcCCcEEEEccC--CCcHHHHHHHHhCCCEEEEecC---CHHHHHHH
Q 020013 54 LIRKTRSL--TERPFGVGVVLAFPHNENIKAILSEKVAVLQVSWG--EYSEELVLEAHSAGVKVVPQVG---SFDEARKA 126 (332)
Q Consensus 54 ~i~~~r~~--~~~p~gvnl~~~~~~~~~~~~~~~~~~~~I~~~~g--~~~~~~i~~~~~~g~~v~~~v~---s~~~a~~a 126 (332)
.++.+|+. ++.|+.++++++++ ..+++.+.+.|+|.|++|.. ....+.++.+++.|+++...+. +.+..+.
T Consensus 53 ~v~~ir~~~~~~~~~dvhLmv~~p-~~~i~~~~~aGad~itvH~Ea~~~~~~~i~~i~~~G~k~gval~p~t~~e~l~~- 130 (228)
T 3ovp_A 53 VVESLRKQLGQDPFFDMHMMVSKP-EQWVKPMAVAGANQYTFHLEATENPGALIKDIRENGMKVGLAIKPGTSVEYLAP- 130 (228)
T ss_dssp HHHHHHHHHCSSSCEEEEEECSCG-GGGHHHHHHHTCSEEEEEGGGCSCHHHHHHHHHHTTCEEEEEECTTSCGGGTGG-
T ss_pred HHHHHHHhhCCCCcEEEEEEeCCH-HHHHHHHHHcCCCEEEEccCCchhHHHHHHHHHHcCCCEEEEEcCCCCHHHHHH-
Confidence 35566665 57899999999877 56889999999999999953 2345788999999999877664 3333333
Q ss_pred HHcCCCEEEEecCC--CCcccCCCCchhhhHHHHHHHhCCCCCcEEeecCcCCHHHHHHHHHcCcceeeeccccccCc
Q 020013 127 VNAGVDAIIVQGRE--AGGHVIGQDGLISLLPMVVDLIGDRDIPIIAAGGIVDARGYVAALSLGAQGICLGTRFVASE 202 (332)
Q Consensus 127 ~~~g~D~ivv~G~e--aGGh~~~~~~~~~ll~~i~~~~~~~~iPviaaGGI~~~~~v~~al~~GA~gV~~GT~fl~t~ 202 (332)
+...+|+|.+-..+ .||... ....+..++++++... ++|+.++||| +++++.++..+|||.+++||+++.++
T Consensus 131 ~l~~~D~Vl~msv~pGf~Gq~f-~~~~l~ki~~lr~~~~--~~~I~VdGGI-~~~t~~~~~~aGAd~~VvGsaIf~a~ 204 (228)
T 3ovp_A 131 WANQIDMALVMTVEPGFGGQKF-MEDMMPKVHWLRTQFP--SLDIEVDGGV-GPDTVHKCAEAGANMIVSGSAIMRSE 204 (228)
T ss_dssp GGGGCSEEEEESSCTTTCSCCC-CGGGHHHHHHHHHHCT--TCEEEEESSC-STTTHHHHHHHTCCEEEESHHHHTCS
T ss_pred HhccCCeEEEeeecCCCCCccc-CHHHHHHHHHHHHhcC--CCCEEEeCCc-CHHHHHHHHHcCCCEEEEeHHHhCCC
Confidence 33358999875433 344432 1234566777776543 6899999999 79999999999999999999988654
|
| >1h5y_A HISF; histidine biosynthesis, TIM-barrel; 2.0A {Pyrobaculum aerophilum} SCOP: c.1.2.1 | Back alignment and structure |
|---|
Probab=99.21 E-value=8.5e-10 Score=98.18 Aligned_cols=183 Identities=19% Similarity=0.215 Sum_probs=120.4
Q ss_pred cHHHHHHHHhCCCceeec--CC-CCCCHHHHHHHHHHHHhhcCCcEEEEeecCCCCHHHHHHHHhcCCcEEEEccCC--C
Q 020013 24 GPELVAAVANAGGLGLLR--AP-DWEAPDYLRDLIRKTRSLTERPFGVGVVLAFPHNENIKAILSEKVAVLQVSWGE--Y 98 (332)
Q Consensus 24 ~~~la~avs~aGglG~i~--~~-~~~~~e~~~~~i~~~r~~~~~p~gvnl~~~~~~~~~~~~~~~~~~~~I~~~~g~--~ 98 (332)
..+++.++.++|.=.+.. .. .........+.++++++.++.|+-++-.+.. .+.++.+.+.|+|.|.++... .
T Consensus 35 ~~~~a~~~~~~G~d~i~v~~~~~~~~~~~~~~~~i~~i~~~~~ipvi~~g~i~~--~~~~~~~~~~Gad~V~i~~~~~~~ 112 (253)
T 1h5y_A 35 PVEMAVRYEEEGADEIAILDITAAPEGRATFIDSVKRVAEAVSIPVLVGGGVRS--LEDATTLFRAGADKVSVNTAAVRN 112 (253)
T ss_dssp HHHHHHHHHHTTCSCEEEEECCCCTTTHHHHHHHHHHHHHHCSSCEEEESSCCS--HHHHHHHHHHTCSEEEESHHHHHC
T ss_pred HHHHHHHHHHcCCCEEEEEeCCccccCCcccHHHHHHHHHhcCCCEEEECCCCC--HHHHHHHHHcCCCEEEEChHHhhC
Confidence 356777776666322221 11 1112223455677777777889888766643 456678888999999986321 1
Q ss_pred cHHHHHHHHhCCC---EEEEec--------------------CCHHHHHHHHHcCCCEEEEecCCCCcccCCCCchhhhH
Q 020013 99 SEELVLEAHSAGV---KVVPQV--------------------GSFDEARKAVNAGVDAIIVQGREAGGHVIGQDGLISLL 155 (332)
Q Consensus 99 ~~~~i~~~~~~g~---~v~~~v--------------------~s~~~a~~a~~~g~D~ivv~G~eaGGh~~~~~~~~~ll 155 (332)
|..+.+..+..|. .+...+ +..+.++.+.+.|+|+|++.+...+|+..+ ..+.++
T Consensus 113 ~~~~~~~~~~~g~~~i~~~~~~~~~~g~~~v~~~~~~~~~~~~~~e~~~~~~~~G~d~i~~~~~~~~g~~~~--~~~~~i 190 (253)
T 1h5y_A 113 PQLVALLAREFGSQSTVVAIDAKWNGEYYEVYVKGGREATGLDAVKWAKEVEELGAGEILLTSIDRDGTGLG--YDVELI 190 (253)
T ss_dssp THHHHHHHHHHCGGGEEEEEEEEECSSSEEEEETTTTEEEEEEHHHHHHHHHHHTCSEEEEEETTTTTTCSC--CCHHHH
T ss_pred cHHHHHHHHHcCCCcEEEEEEeecCCCcEEEEEeCCeecCCCCHHHHHHHHHhCCCCEEEEecccCCCCcCc--CCHHHH
Confidence 3323333444442 222221 235668888899999999988766665322 346778
Q ss_pred HHHHHHhCCCCCcEEeecCcCCHHHHHHHHHcCcceeeeccccccCccCCCCHHHHHHHh
Q 020013 156 PMVVDLIGDRDIPIIAAGGIVDARGYVAALSLGAQGICLGTRFVASEESYAHPEYKRKLV 215 (332)
Q Consensus 156 ~~i~~~~~~~~iPviaaGGI~~~~~v~~al~~GA~gV~~GT~fl~t~Es~~~~~~k~~~~ 215 (332)
.++++.. ++||++.|||.+++++.+++.+||++|++||+|+..... .+..++.+.
T Consensus 191 ~~l~~~~---~~pvia~GGi~~~~~~~~~~~~Ga~~v~vgsal~~~~~~--~~~~~~~l~ 245 (253)
T 1h5y_A 191 RRVADSV---RIPVIASGGAGRVEHFYEAAAAGADAVLAASLFHFRVLS--IAQVKRYLK 245 (253)
T ss_dssp HHHHHHC---SSCEEEESCCCSHHHHHHHHHTTCSEEEESHHHHTTSSC--HHHHHHHHH
T ss_pred HHHHHhc---CCCEEEeCCCCCHHHHHHHHHcCCcHHHHHHHHHcCCCC--HHHHHHHHH
Confidence 8888776 799999999988999999999999999999999876432 344455443
|
| >1ka9_F Imidazole glycerol phosphtate synthase; riken structural genomics/proteomics initiative, RSGI, structural genomics, transferase; 2.30A {Thermus thermophilus} SCOP: c.1.2.1 | Back alignment and structure |
|---|
Probab=99.19 E-value=8.9e-10 Score=98.53 Aligned_cols=172 Identities=23% Similarity=0.267 Sum_probs=116.2
Q ss_pred cHHHHHHHHhCCC--ceeecCC-CCCCHHHHHHHHHHHHhhcCCcEEEEeecCCCCHHHHHHHHhcCCcEEEEccCC--C
Q 020013 24 GPELVAAVANAGG--LGLLRAP-DWEAPDYLRDLIRKTRSLTERPFGVGVVLAFPHNENIKAILSEKVAVLQVSWGE--Y 98 (332)
Q Consensus 24 ~~~la~avs~aGg--lG~i~~~-~~~~~e~~~~~i~~~r~~~~~p~gvnl~~~~~~~~~~~~~~~~~~~~I~~~~g~--~ 98 (332)
..+++.+..++|. +-+.... .........+.++++++.++.|+-++-.+.. .+.++.+++.|+|.|.+.... .
T Consensus 33 ~~~~a~~~~~~Gad~i~v~d~~~~~~~~~~~~~~i~~i~~~~~iPvi~~Ggi~~--~~~~~~~~~~Gad~V~lg~~~l~~ 110 (252)
T 1ka9_F 33 PVEAARAYDEAGADELVFLDISATHEERAILLDVVARVAERVFIPLTVGGGVRS--LEDARKLLLSGADKVSVNSAAVRR 110 (252)
T ss_dssp HHHHHHHHHHHTCSCEEEEECCSSTTCHHHHHHHHHHHHTTCCSCEEEESSCCS--HHHHHHHHHHTCSEEEECHHHHHC
T ss_pred HHHHHHHHHHcCCCEEEEEcCCccccCccccHHHHHHHHHhCCCCEEEECCcCC--HHHHHHHHHcCCCEEEEChHHHhC
Confidence 3467777777663 2222111 1122233445677787777888887655443 567888888999999986321 1
Q ss_pred cHHHHHHHHhCC---CEEEEec--------------------CCHHHHHHHHHcCCCEEEEecCCCCcccCCCCchhhhH
Q 020013 99 SEELVLEAHSAG---VKVVPQV--------------------GSFDEARKAVNAGVDAIIVQGREAGGHVIGQDGLISLL 155 (332)
Q Consensus 99 ~~~~i~~~~~~g---~~v~~~v--------------------~s~~~a~~a~~~g~D~ivv~G~eaGGh~~~~~~~~~ll 155 (332)
|..+.+..+..+ +.+...+ ++.+.++.+.+.|++.|++.+....|+..+ ..+.++
T Consensus 111 p~~~~~~~~~~~~~~i~~~~~~~~~~g~~~v~~~g~~~~~~~~~~e~~~~~~~~G~~~i~~~~~~~~g~~~g--~~~~~i 188 (252)
T 1ka9_F 111 PELIRELADHFGAQAVVLAIDARWRGDFPEVHVAGGRVPTGLHAVEWAVKGVELGAGEILLTSMDRDGTKEG--YDLRLT 188 (252)
T ss_dssp THHHHHHHHHHCGGGEEEEEEEEEETTEEEEEETTTTEEEEEEHHHHHHHHHHHTCCEEEEEETTTTTTCSC--CCHHHH
T ss_pred cHHHHHHHHHcCCCcEEEEEEEecCCCCEEEEECCCccccCCcHHHHHHHHHHcCCCEEEEecccCCCCcCC--CCHHHH
Confidence 222222233333 2333333 236778889999999999976654454322 248889
Q ss_pred HHHHHHhCCCCCcEEeecCcCCHHHHHHHHHcCcceeeeccccccCc
Q 020013 156 PMVVDLIGDRDIPIIAAGGIVDARGYVAALSLGAQGICLGTRFVASE 202 (332)
Q Consensus 156 ~~i~~~~~~~~iPviaaGGI~~~~~v~~al~~GA~gV~~GT~fl~t~ 202 (332)
.++++.+ ++|||+.|||.+++++.+++.+|||||++||+|+..+
T Consensus 189 ~~l~~~~---~ipvia~GGI~~~~d~~~~~~~Gadgv~vgsal~~~~ 232 (252)
T 1ka9_F 189 RMVAEAV---GVPVIASGGAGRMEHFLEAFQAGAEAALAASVFHFGE 232 (252)
T ss_dssp HHHHHHC---SSCEEEESCCCSHHHHHHHHHTTCSEEEESHHHHTTS
T ss_pred HHHHHHc---CCCEEEeCCCCCHHHHHHHHHCCCHHHHHHHHHHcCC
Confidence 9998877 7999999999999999999999999999999999764
|
| >1pii_A N-(5'phosphoribosyl)anthranilate isomerase; bifunctional(isomerase and synthase); 2.00A {Escherichia coli} SCOP: c.1.2.4 c.1.2.4 PDB: 1jcm_P* 2kzh_A | Back alignment and structure |
|---|
Probab=99.19 E-value=7.1e-11 Score=113.72 Aligned_cols=162 Identities=19% Similarity=0.176 Sum_probs=119.3
Q ss_pred CCCcHHHHHHHHhCC--CceeecC---CCCCCHHHHHHHHHHHHhhcCCcEEEEeecCCCCHHHHHHHHhcCCcEEEEcc
Q 020013 21 DISGPELVAAVANAG--GLGLLRA---PDWEAPDYLRDLIRKTRSLTERPFGVGVVLAFPHNENIKAILSEKVAVLQVSW 95 (332)
Q Consensus 21 g~s~~~la~avs~aG--glG~i~~---~~~~~~e~~~~~i~~~r~~~~~p~gvnl~~~~~~~~~~~~~~~~~~~~I~~~~ 95 (332)
|+++++.+.+++++| .+||+.. +++.+++..+++++. ....-|++|++.+.++..+.+.+.+.++|++|
T Consensus 261 Git~~eda~~a~~~Gad~iGfIf~~~SpR~V~~~~a~~i~~~-----~~v~~VgVFvn~~~~~i~~~~~~~~ld~vQLH- 334 (452)
T 1pii_A 261 GLTRGQDAKAAYDAGAIYGGLIFVATSPRCVNVEQAQEVMAA-----APLQYVGVFRNHDIADVVDKAKVLSLAAVQLH- 334 (452)
T ss_dssp CCCSHHHHHHHHHHTCSEEEEECCTTCTTBCCHHHHHHHHHH-----CCCEEEEEESSCCHHHHHHHHHHHTCSEEEEC-
T ss_pred CCCcHHHHHHHHhcCCCEEEeecCCCCCCCCCHHHHHHHHhc-----CCCCEEEEEeCCCHHHHHHHHHhcCCCEEEEC-
Confidence 689999999999998 5999953 466788887776665 13456889998876666777778899999999
Q ss_pred CCCcHHHHHHHHhC---CCEEEEecCCHHHHHHHHHc-CCCEEEEecCCCCcccCCCCchhhhHHHHHHHhCCCCCcEEe
Q 020013 96 GEYSEELVLEAHSA---GVKVVPQVGSFDEARKAVNA-GVDAIIVQGREAGGHVIGQDGLISLLPMVVDLIGDRDIPIIA 171 (332)
Q Consensus 96 g~~~~~~i~~~~~~---g~~v~~~v~s~~~a~~a~~~-g~D~ivv~G~eaGGh~~~~~~~~~ll~~i~~~~~~~~iPvia 171 (332)
|++++++++.++.. ++++|..+.-.+.... ... .+|+++++.. .||. |....|.+++.. . +.|++.
T Consensus 335 G~E~~~~~~~l~~~~p~~~~iika~~v~~~~~~-~~~~~~d~~LlD~~-~GGt--G~~fdW~~l~~~---~---~~p~iL 404 (452)
T 1pii_A 335 GNEEQLYIDTLREALPAHVAIWKALSVGETLPA-REFQHVDKYVLDNG-QGGS--GQRFDWSLLNGQ---S---LGNVLL 404 (452)
T ss_dssp SCCCHHHHHHHHHHSCTTSEEEEEEECSSSCCC-CCCTTCCEEEEESC-SCCS--SCCCCGGGGTTS---C---CTTEEE
T ss_pred CCCCHHHHHHHHhhccCCCcEEEEEecCCccch-hhhhcccEEEecCC-CCCC--CCccCHHHhhcc---c---CCcEEE
Confidence 67788899988763 6788854321111101 111 5899999863 2443 444568777531 1 579999
Q ss_pred ecCcCCHHHHHHHHHcCcceeeeccccc
Q 020013 172 AGGIVDARGYVAALSLGAQGICLGTRFV 199 (332)
Q Consensus 172 aGGI~~~~~v~~al~~GA~gV~~GT~fl 199 (332)
+||| +++|+.+++..++.||-+-|.+=
T Consensus 405 AGGL-~p~NV~~ai~~~p~gvDvsSGVE 431 (452)
T 1pii_A 405 AGGL-GADNCVEAAQTGCAGLDFNSAVE 431 (452)
T ss_dssp ESSC-CTTTHHHHHTTCCSEEEECGGGE
T ss_pred EcCC-CHHHHHHHHhcCCCEEEeCCcee
Confidence 9999 89999999999999999988864
|
| >3oix_A Putative dihydroorotate dehydrogenase; dihydrooro oxidase; TIM barrel, oxidoreductase; HET: MLY FMN; 2.40A {Streptococcus mutans} | Back alignment and structure |
|---|
Probab=99.18 E-value=3.2e-10 Score=105.96 Aligned_cols=191 Identities=15% Similarity=0.156 Sum_probs=118.8
Q ss_pred hhcC--CccceecCCCCCCCCcHHHHHHHHhCCCceeecCCCC----------------------------CCHHHHHHH
Q 020013 5 GMLG--FEYGIVQAPLGPDISGPELVAAVANAGGLGLLRAPDW----------------------------EAPDYLRDL 54 (332)
Q Consensus 5 ~~l~--~~~Pii~apM~~g~s~~~la~avs~aGglG~i~~~~~----------------------------~~~e~~~~~ 54 (332)
+++| ++.||+.+.=. .-.+.+....+..+| +|++..++. ...|.+.+.
T Consensus 41 ~~~Gl~~~NPv~lAaG~-~~~~~e~~~~~~~~G-~G~v~~ktvt~~pq~gnp~PR~~~~~~~~iN~~G~~n~G~~~~~~~ 118 (345)
T 3oix_A 41 TIGSFDFDNCLMNAAGV-YCMTREELAAIDHSE-AGSFVTXTGTLEERAGNPQPRYADTKLGSINSMGLPNLGINYYLDY 118 (345)
T ss_dssp EETTEEESCSEEECTTS-SCSSHHHHHHHHTSS-CSBCBCCCBCSSCBCCSCSCCEEECSSEEEECCCCCBSCHHHHHHH
T ss_pred EECCEECCCCCEEcCCC-CCCCHHHHHHHHHcC-CCeEEeeeecCCCCCCCCCCcEEecccchhccCCCCChhHHHHHHH
Confidence 3445 57899977532 124678888887765 666643210 012334444
Q ss_pred HHHH-HhhcCCcEEEEeecCCCCHHHH---HHHHhcCCc-EEEEccCCC-----------cH---HHHHHHHhC-CCEEE
Q 020013 55 IRKT-RSLTERPFGVGVVLAFPHNENI---KAILSEKVA-VLQVSWGEY-----------SE---ELVLEAHSA-GVKVV 114 (332)
Q Consensus 55 i~~~-r~~~~~p~gvnl~~~~~~~~~~---~~~~~~~~~-~I~~~~g~~-----------~~---~~i~~~~~~-g~~v~ 114 (332)
+... +...+.|+++|+....+ +++. +.+.+.+.+ +|.+++++| ++ ++++.+++. .++|+
T Consensus 119 l~~~~~~~~~~pvivsI~g~~~-~d~~~~a~~l~~~g~~d~ielNisCPn~~G~~~l~~~~e~l~~il~av~~~~~~PV~ 197 (345)
T 3oix_A 119 VTELQKQPDSKNHFLSLVGMSP-EETHTILXMVEASKYQGLVELNLSCPNVPGXPQIAYDFETTDQILSEVFTYFTKPLG 197 (345)
T ss_dssp HHHHHHSTTCCCCEEEECCSSH-HHHHHHHHHHHHSSCCSEEEEECSCCCSTTCCCGGGCHHHHHHHHHHHTTTCCSCEE
T ss_pred HHHHhhccCCCCEEEEecCCCH-HHHHHHHHHHhccCCCcEEEEecCCCCcCCchhhcCCHHHHHHHHHHHHHHhCCCeE
Confidence 4432 23357899999987543 3443 334445766 999987753 12 334444443 67888
Q ss_pred EecC---CH-HHHHHHHHcCCCEEEE-------------ec--------CCCCcccCCCC---chhhhHHHHHHHhCCCC
Q 020013 115 PQVG---SF-DEARKAVNAGVDAIIV-------------QG--------REAGGHVIGQD---GLISLLPMVVDLIGDRD 166 (332)
Q Consensus 115 ~~v~---s~-~~a~~a~~~g~D~ivv-------------~G--------~eaGGh~~~~~---~~~~ll~~i~~~~~~~~ 166 (332)
.++. +. +-++.+..+|+|.|.+ .. .+.||.. |+. ..+..+.++++.++. +
T Consensus 198 vKi~p~~~~~~~a~~~~~aga~~i~~int~nt~g~~~~i~~~~~~~~~~~~~gGlS-G~ai~p~a~~~v~~i~~~~~~-~ 275 (345)
T 3oix_A 198 IKLPPYFDIVHFDQAAAIFNXYPLTFVNCINSIGNGLVIEDETVVIXPKNGFGGIG-GDYVKPTALANVHAFYKRLNP-S 275 (345)
T ss_dssp EEECCCCCHHHHHHHHHHHTTSCCSEEEECCCEEEEECEETTEESCSGGGGEEEEE-EGGGHHHHHHHHHHHHTTSCT-T
T ss_pred EEECCCCCHHHHHHHHHHhCCCceEEEEeecccccceeeccCccccccccccCCcC-CccccHHHHHHHHHHHHHcCC-C
Confidence 7765 33 3455566666665432 11 1234433 221 126678888877632 6
Q ss_pred CcEEeecCcCCHHHHHHHHHcCcceeeecccccc
Q 020013 167 IPIIAAGGIVDARGYVAALSLGAQGICLGTRFVA 200 (332)
Q Consensus 167 iPviaaGGI~~~~~v~~al~~GA~gV~~GT~fl~ 200 (332)
+|||+.|||.+++++.+++.+|||+|++||+|+.
T Consensus 276 ipIIg~GGI~s~~da~~~l~aGAd~V~igra~~~ 309 (345)
T 3oix_A 276 IQIIGTGGVXTGRDAFEHILCGASMVQIGTALHQ 309 (345)
T ss_dssp SEEEEESSCCSHHHHHHHHHHTCSEEEESHHHHH
T ss_pred CcEEEECCCCChHHHHHHHHhCCCEEEEChHHHh
Confidence 9999999999999999999999999999999654
|
| >3inp_A D-ribulose-phosphate 3-epimerase; IDP02542, isomerase, struc genomics, center for structural genomics of infectious DISE csgid; 2.05A {Francisella tularensis subsp} | Back alignment and structure |
|---|
Probab=99.18 E-value=1.6e-10 Score=102.87 Aligned_cols=145 Identities=14% Similarity=0.223 Sum_probs=107.3
Q ss_pred HHHHHHhhc-CCcEEEEeecCCCCHHHHHHHHhcCCcEEEEccC--CCcHHHHHHHHhCCCEEEEecC--C-HHHHHHHH
Q 020013 54 LIRKTRSLT-ERPFGVGVVLAFPHNENIKAILSEKVAVLQVSWG--EYSEELVLEAHSAGVKVVPQVG--S-FDEARKAV 127 (332)
Q Consensus 54 ~i~~~r~~~-~~p~gvnl~~~~~~~~~~~~~~~~~~~~I~~~~g--~~~~~~i~~~~~~g~~v~~~v~--s-~~~a~~a~ 127 (332)
.++.+|+.+ +.|+.+.+++.++ ..+++.+.++|+|.|++|.. ..+.+.++.+++.|+++...+. + .+.++..
T Consensus 76 ~v~~lr~~~p~~~ldvHLmv~~p-~~~i~~~~~aGAd~itvH~Ea~~~~~~~i~~ir~~G~k~Gvalnp~Tp~e~l~~~- 153 (246)
T 3inp_A 76 VLKALRDYGITAGMDVHLMVKPV-DALIESFAKAGATSIVFHPEASEHIDRSLQLIKSFGIQAGLALNPATGIDCLKYV- 153 (246)
T ss_dssp HHHHHHHHTCCSCEEEEEECSSC-HHHHHHHHHHTCSEEEECGGGCSCHHHHHHHHHTTTSEEEEEECTTCCSGGGTTT-
T ss_pred HHHHHHHhCCCCeEEEEEeeCCH-HHHHHHHHHcCCCEEEEccccchhHHHHHHHHHHcCCeEEEEecCCCCHHHHHHH-
Confidence 466677777 8999999999887 67899999999999999853 2455788999999999876653 3 3333333
Q ss_pred HcCCCEEEEec--CCCCcccCCCCchhhhHHHHHHHhC--CCCCcEEeecCcCCHHHHHHHHHcCcceeeeccccccCc
Q 020013 128 NAGVDAIIVQG--REAGGHVIGQDGLISLLPMVVDLIG--DRDIPIIAAGGIVDARGYVAALSLGAQGICLGTRFVASE 202 (332)
Q Consensus 128 ~~g~D~ivv~G--~eaGGh~~~~~~~~~ll~~i~~~~~--~~~iPviaaGGI~~~~~v~~al~~GA~gV~~GT~fl~t~ 202 (332)
...+|+|++-. +..||..+. ...+..++++++... +.++++.++||| +.+++.++.++|||.+++||++..++
T Consensus 154 l~~vD~VlvMsV~PGfgGQ~fi-~~~l~KI~~lr~~~~~~~~~~~I~VDGGI-~~~ti~~~~~aGAD~~V~GSaIf~a~ 230 (246)
T 3inp_A 154 ESNIDRVLIMSVNPGFGGQKFI-PAMLDKAKEISKWISSTDRDILLEIDGGV-NPYNIAEIAVCGVNAFVAGSAIFNSD 230 (246)
T ss_dssp GGGCSEEEEECSCTTC--CCCC-TTHHHHHHHHHHHHHHHTSCCEEEEESSC-CTTTHHHHHTTTCCEEEESHHHHTSS
T ss_pred HhcCCEEEEeeecCCCCCcccc-hHHHHHHHHHHHHHHhcCCCeeEEEECCc-CHHHHHHHHHcCCCEEEEehHHhCCC
Confidence 33799998754 334555422 345666777666542 125899999999 78999999999999999999988664
|
| >1i4n_A Indole-3-glycerol phosphate synthase; thermostable TIM-barrel protein, salt bridges, electrostatic interactions, lyase; 2.50A {Thermotoga maritima} SCOP: c.1.2.4 PDB: 1j5t_A | Back alignment and structure |
|---|
Probab=99.17 E-value=4.7e-10 Score=100.10 Aligned_cols=167 Identities=19% Similarity=0.239 Sum_probs=118.4
Q ss_pred HHHHHHHHh-CCCceeecCCCCC--CHHHHHHHHHHHHhhcCCcEEEEeecCCCCHHHHHHHHhcCCcEEEEccCCCc--
Q 020013 25 PELVAAVAN-AGGLGLLRAPDWE--APDYLRDLIRKTRSLTERPFGVGVVLAFPHNENIKAILSEKVAVLQVSWGEYS-- 99 (332)
Q Consensus 25 ~~la~avs~-aGglG~i~~~~~~--~~e~~~~~i~~~r~~~~~p~gvnl~~~~~~~~~~~~~~~~~~~~I~~~~g~~~-- 99 (332)
.++|.+..+ |-++.++.-..|. +.+. +..+|+.++.|+-..=|+.++ -++..+...|+|+|.+.....+
T Consensus 64 ~~iA~~y~~~A~~IsVlTd~~~F~gs~~d----L~~ir~~v~lPvLrKDfi~~~--~qi~ea~~~GAD~ilLi~a~l~~~ 137 (251)
T 1i4n_A 64 EDFIRMYDELADAISILTEKHYFKGDPAF----VRAARNLTCRPILAKDFYIDT--VQVKLASSVGADAILIIARILTAE 137 (251)
T ss_dssp HHHHHHHHHHCSEEEEECCCSSSCCCTHH----HHHHHTTCCSCEEEECCCCST--HHHHHHHHTTCSEEEEEGGGSCHH
T ss_pred HHHHHHHHHhCCceEEEecccccCCCHHH----HHHHHHhCCCCEEEeeCCCCH--HHHHHHHHcCCCEEEEecccCCHH
Confidence 455555544 3345554322221 3444 566677777887655455433 2466688999999988643322
Q ss_pred --HHHHHHHHhCCCEEEEecCCHHHHHHHHHc-CCCEEEEecCCCCcccCCCCchhhhHHHHHHHhCCCCCcEEeecCcC
Q 020013 100 --EELVLEAHSAGVKVVPQVGSFDEARKAVNA-GVDAIIVQGREAGGHVIGQDGLISLLPMVVDLIGDRDIPIIAAGGIV 176 (332)
Q Consensus 100 --~~~i~~~~~~g~~v~~~v~s~~~a~~a~~~-g~D~ivv~G~eaGGh~~~~~~~~~ll~~i~~~~~~~~iPviaaGGI~ 176 (332)
.++++.+++.|+.++..|++.+|+..+.+. |+|.|-+.+++..+.. ..+....++.+.++. ++++|+.|||.
T Consensus 138 ~l~~l~~~a~~lGl~~lvEv~~~eE~~~A~~l~g~~iIGinnr~l~t~~----~d~~~~~~l~~~ip~-~~~vIaEsGI~ 212 (251)
T 1i4n_A 138 QIKEIYEAAEELGMDSLVEVHSREDLEKVFSVIRPKIIGINTRDLDTFE----IKKNVLWELLPLVPD-DTVVVAESGIK 212 (251)
T ss_dssp HHHHHHHHHHTTTCEEEEEECSHHHHHHHHTTCCCSEEEEECBCTTTCC----BCTTHHHHHGGGSCT-TSEEEEESCCC
T ss_pred HHHHHHHHHHHcCCeEEEEeCCHHHHHHHHhcCCCCEEEEeCcccccCC----CCHHHHHHHHHhCCC-CCEEEEeCCCC
Confidence 345667778899999999999999999999 9999999887543321 224444555555532 58999999999
Q ss_pred CHHHHHHHHHcCcceeeeccccccCcc
Q 020013 177 DARGYVAALSLGAQGICLGTRFVASEE 203 (332)
Q Consensus 177 ~~~~v~~al~~GA~gV~~GT~fl~t~E 203 (332)
+++++..+..+ |++|.+|++++.+++
T Consensus 213 t~edv~~~~~~-a~avLVG~aimr~~d 238 (251)
T 1i4n_A 213 DPRELKDLRGK-VNAVLVGTSIMKAEN 238 (251)
T ss_dssp CGGGHHHHTTT-CSEEEECHHHHHCSS
T ss_pred CHHHHHHHHHh-CCEEEEcHHHcCCcC
Confidence 99999999999 999999999998755
|
| >1vc4_A Indole-3-glycerol phosphate synthase; lyase, tryptophan biosynthesis, riken structural genomics/PR initiative, RSGI, structural genomics; 1.80A {Thermus thermophilus} SCOP: c.1.2.4 | Back alignment and structure |
|---|
Probab=99.17 E-value=7.2e-10 Score=99.45 Aligned_cols=168 Identities=14% Similarity=0.122 Sum_probs=115.6
Q ss_pred HHHHHHHHhCCC--ceeecCCCCC--CHHHHHHHHHHHHhhcCCcEEEEeecCCCCHHHHHHHHhcCCcEEEEccCC---
Q 020013 25 PELVAAVANAGG--LGLLRAPDWE--APDYLRDLIRKTRSLTERPFGVGVVLAFPHNENIKAILSEKVAVLQVSWGE--- 97 (332)
Q Consensus 25 ~~la~avs~aGg--lG~i~~~~~~--~~e~~~~~i~~~r~~~~~p~gvnl~~~~~~~~~~~~~~~~~~~~I~~~~g~--- 97 (332)
.+++.+..++|. +-++....+. +++. ++.+++.++.|+-..-++.+ ..++..+.+.|+|.|.+....
T Consensus 68 ~~~A~~~~~~GA~~isvlt~~~~f~G~~~~----l~~i~~~v~lPvl~kdfI~d--~~qi~~a~~~GAD~VlL~~~~l~~ 141 (254)
T 1vc4_A 68 VEAALAYARGGARAVSVLTEPHRFGGSLLD----LKRVREAVDLPLLRKDFVVD--PFMLEEARAFGASAALLIVALLGE 141 (254)
T ss_dssp HHHHHHHHHTTCSEEEEECCCSSSCCCHHH----HHHHHHHCCSCEEEESCCCS--HHHHHHHHHTTCSEEEEEHHHHGG
T ss_pred HHHHHHHHHcCCCEEEEecchhhhccCHHH----HHHHHHhcCCCEEECCcCCC--HHHHHHHHHcCCCEEEECccchHH
Confidence 567777766664 3333222221 3443 45566667888776655433 446788899999999985321
Q ss_pred CcHHHHHHHHhCCCEEEEecCCHHHHHHHHHcCCCEEEEecCCCCcccCCCCchhhhHHHHHHHhCC--CCCcEEeecCc
Q 020013 98 YSEELVLEAHSAGVKVVPQVGSFDEARKAVNAGVDAIIVQGREAGGHVIGQDGLISLLPMVVDLIGD--RDIPIIAAGGI 175 (332)
Q Consensus 98 ~~~~~i~~~~~~g~~v~~~v~s~~~a~~a~~~g~D~ivv~G~eaGGh~~~~~~~~~ll~~i~~~~~~--~~iPviaaGGI 175 (332)
...++++..+..|+.++..+++.+|+..+.+.|+|+|-+.+...... ...+..+.++.+.++. .++|+|+.|||
T Consensus 142 ~l~~l~~~a~~lGl~~lvev~~~~E~~~a~~~gad~IGvn~~~l~~~----~~dl~~~~~L~~~i~~~~~~~~vIAegGI 217 (254)
T 1vc4_A 142 LTGAYLEEARRLGLEALVEVHTERELEIALEAGAEVLGINNRDLATL----HINLETAPRLGRLARKRGFGGVLVAESGY 217 (254)
T ss_dssp GHHHHHHHHHHHTCEEEEEECSHHHHHHHHHHTCSEEEEESBCTTTC----CBCTTHHHHHHHHHHHTTCCSEEEEESCC
T ss_pred HHHHHHHHHHHCCCeEEEEECCHHHHHHHHHcCCCEEEEccccCcCC----CCCHHHHHHHHHhCccccCCCeEEEEcCC
Confidence 22344555557799999999999999999999999998876543211 1223444444444321 14899999999
Q ss_pred CCHHHHHHHHHcCcceeeeccccccCcc
Q 020013 176 VDARGYVAALSLGAQGICLGTRFVASEE 203 (332)
Q Consensus 176 ~~~~~v~~al~~GA~gV~~GT~fl~t~E 203 (332)
.+++|+.++.. |++||.+|++++..+.
T Consensus 218 ~s~~dv~~l~~-Ga~gvlVGsAl~~~~d 244 (254)
T 1vc4_A 218 SRKEELKALEG-LFDAVLIGTSLMRAPD 244 (254)
T ss_dssp CSHHHHHTTTT-TCSEEEECHHHHTSSC
T ss_pred CCHHHHHHHHc-CCCEEEEeHHHcCCCC
Confidence 99999999999 9999999999997654
|
| >1geq_A Tryptophan synthase alpha-subunit; hyperthermophIle, pyrococ furiosus, X-RAY analysis, stability, calorimetry, lyase; 2.00A {Pyrococcus furiosus} SCOP: c.1.2.4 PDB: 1wdw_A* 2dzu_A 2dzp_A 2e09_A 2dzw_A 2dzs_A 2dzv_A 2dzt_A 2dzx_A | Back alignment and structure |
|---|
Probab=99.16 E-value=3.7e-10 Score=100.86 Aligned_cols=152 Identities=15% Similarity=0.083 Sum_probs=103.3
Q ss_pred HHHHHHHHHHHhhcCCcEEEEeecCC----CCHHHHHHHHhcCCcEEEEccC--CCcHHHHHHHHhCCCEEEEecC--CH
Q 020013 49 DYLRDLIRKTRSLTERPFGVGVVLAF----PHNENIKAILSEKVAVLQVSWG--EYSEELVLEAHSAGVKVVPQVG--SF 120 (332)
Q Consensus 49 e~~~~~i~~~r~~~~~p~gvnl~~~~----~~~~~~~~~~~~~~~~I~~~~g--~~~~~~i~~~~~~g~~v~~~v~--s~ 120 (332)
+...+.++++|+.++.|+.+-...+. ...+.++.+.+.|++.|.++.- ..+.++++.+++.|.+++..++ +.
T Consensus 66 ~~~~~~i~~i~~~~~~pv~~~~~~~~~~~~~~~~~~~~~~~~Gad~v~~~~~~~~~~~~~~~~~~~~g~~~~~~i~~~t~ 145 (248)
T 1geq_A 66 REAFWIVKEFRRHSSTPIVLMTYYNPIYRAGVRNFLAEAKASGVDGILVVDLPVFHAKEFTEIAREEGIKTVFLAAPNTP 145 (248)
T ss_dssp HHHHHHHHHHHTTCCCCEEEEECHHHHHHHCHHHHHHHHHHHTCCEEEETTCCGGGHHHHHHHHHHHTCEEEEEECTTCC
T ss_pred HHHHHHHHHHHhhCCCCEEEEeccchhhhcCHHHHHHHHHHCCCCEEEECCCChhhHHHHHHHHHHhCCCeEEEECCCCH
Confidence 44567888888877778554321121 1146788899999999999721 1234677778888988776554 55
Q ss_pred HHHHHHHHcCCC-EEEEecCC-CCcccCC-CCchhhhHHHHHHHhCCCCCcEEeecCcCCHHHHHHHHHcCcceeeeccc
Q 020013 121 DEARKAVNAGVD-AIIVQGRE-AGGHVIG-QDGLISLLPMVVDLIGDRDIPIIAAGGIVDARGYVAALSLGAQGICLGTR 197 (332)
Q Consensus 121 ~~a~~a~~~g~D-~ivv~G~e-aGGh~~~-~~~~~~ll~~i~~~~~~~~iPviaaGGI~~~~~v~~al~~GA~gV~~GT~ 197 (332)
.+.......++| +|.+-... .+|...+ ....+.+++++++.. ++||++.|||.+++++.+++.+|||+|++||+
T Consensus 146 ~e~~~~~~~~~d~~i~~~~~~G~~g~~~~~~~~~~~~i~~l~~~~---~~pi~~~GGI~~~e~i~~~~~~Gad~vivGsa 222 (248)
T 1geq_A 146 DERLKVIDDMTTGFVYLVSLYGTTGAREEIPKTAYDLLRRAKRIC---RNKVAVGFGVSKREHVVSLLKEGANGVVVGSA 222 (248)
T ss_dssp HHHHHHHHHHCSSEEEEECCC-------CCCHHHHHHHHHHHHHC---SSCEEEESCCCSHHHHHHHHHTTCSEEEECHH
T ss_pred HHHHHHHHhcCCCeEEEEECCccCCCCCCCChhHHHHHHHHHhhc---CCCEEEEeecCCHHHHHHHHHcCCCEEEEcHH
Confidence 666666666678 55442221 1121101 123467888888876 79999999998889999999999999999999
Q ss_pred cccCcc
Q 020013 198 FVASEE 203 (332)
Q Consensus 198 fl~t~E 203 (332)
++...|
T Consensus 223 i~~~~~ 228 (248)
T 1geq_A 223 LVKIIG 228 (248)
T ss_dssp HHHHHH
T ss_pred HHhhHh
Confidence 987643
|
| >1tqx_A D-ribulose-5-phosphate 3-epimerase, putative; structural genomics, protein structure initiative, PSI; 2.00A {Plasmodium falciparum} SCOP: c.1.2.2 | Back alignment and structure |
|---|
Probab=99.14 E-value=3.9e-10 Score=99.41 Aligned_cols=143 Identities=15% Similarity=0.271 Sum_probs=108.2
Q ss_pred HHHHHHHhhc-CCcEEEEeecCCCCHHHHHHHHhcCCcEEEEccCC---CcHHHHH---HHHhCCCEEEEec--CC-HHH
Q 020013 53 DLIRKTRSLT-ERPFGVGVVLAFPHNENIKAILSEKVAVLQVSWGE---YSEELVL---EAHSAGVKVVPQV--GS-FDE 122 (332)
Q Consensus 53 ~~i~~~r~~~-~~p~gvnl~~~~~~~~~~~~~~~~~~~~I~~~~g~---~~~~~i~---~~~~~g~~v~~~v--~s-~~~ 122 (332)
..++.+|+.+ +.|+.+.+++.+| ..+++.+.+ +|.+.+|... .+.+.++ .+++.|+++...+ .+ .+.
T Consensus 53 ~~v~~lr~~~p~~~~dvhLmv~dp-~~~i~~~~~--Ad~itvH~ea~~~~~~~~i~~~~~i~~~G~k~gvalnp~tp~~~ 129 (227)
T 1tqx_A 53 PVINNLKKYTKSIFFDVHLMVEYP-EKYVPLLKT--SNQLTFHFEALNEDTERCIQLAKEIRDNNLWCGISIKPKTDVQK 129 (227)
T ss_dssp HHHHHHGGGCSSCEEEEEEESSCG-GGGGGGCTT--SSEEEEEGGGGTTCHHHHHHHHHHHHTTTCEEEEEECTTSCGGG
T ss_pred HHHHHHHHhCCCCcEEEEEEEcCH-HHHHHHHHh--CCEEEEeecCCccCHHHHHHHHHHHHHcCCeEEEEeCCCCcHHH
Confidence 4578888888 8999999999886 355655555 9999998543 3457788 9999999988766 23 344
Q ss_pred HHHHHHcC-CCEEEEecCC--CCcccCCCCchhhhHHHHHHHhCCCCCcEEeecCcCCHHHHHHHHHcCcceeeeccccc
Q 020013 123 ARKAVNAG-VDAIIVQGRE--AGGHVIGQDGLISLLPMVVDLIGDRDIPIIAAGGIVDARGYVAALSLGAQGICLGTRFV 199 (332)
Q Consensus 123 a~~a~~~g-~D~ivv~G~e--aGGh~~~~~~~~~ll~~i~~~~~~~~iPviaaGGI~~~~~v~~al~~GA~gV~~GT~fl 199 (332)
.+...+.| +|+|.+-..+ .||... ....+..+.++++..+ +++|.++||| +.+++.++.++|||.+++||++.
T Consensus 130 ~~~~l~~g~~D~VlvmsV~pGf~gq~f-~~~~l~ki~~lr~~~~--~~~I~VdGGI-~~~ti~~~~~aGAd~~V~GsaIf 205 (227)
T 1tqx_A 130 LVPILDTNLINTVLVMTVEPGFGGQSF-MHDMMGKVSFLRKKYK--NLNIQVDGGL-NIETTEISASHGANIIVAGTSIF 205 (227)
T ss_dssp GHHHHTTTCCSEEEEESSCTTCSSCCC-CGGGHHHHHHHHHHCT--TCEEEEESSC-CHHHHHHHHHHTCCEEEESHHHH
T ss_pred HHHHhhcCCcCEEEEeeeccCCCCccc-chHHHHHHHHHHHhcc--CCeEEEECCC-CHHHHHHHHHcCCCEEEEeHHHh
Confidence 55555655 9999885543 345432 2345777888877664 6899999999 89999999999999999999988
Q ss_pred cCc
Q 020013 200 ASE 202 (332)
Q Consensus 200 ~t~ 202 (332)
.++
T Consensus 206 ~~~ 208 (227)
T 1tqx_A 206 NAE 208 (227)
T ss_dssp TCS
T ss_pred CCC
Confidence 753
|
| >2w6r_A Imidazole glycerol phosphate synthase subunit HISF; lyase, fusion protein, cobalamin, precorrin, novel fold, VIT; 2.10A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=99.13 E-value=9.8e-10 Score=99.08 Aligned_cols=171 Identities=20% Similarity=0.155 Sum_probs=109.1
Q ss_pred cHHHHHHHHhCCCceeecCCC-----CCCHHHHHHHHHHHHhhcCCcEEEEeecCCCCHHHHHHHHhcCCcEEEEccCC-
Q 020013 24 GPELVAAVANAGGLGLLRAPD-----WEAPDYLRDLIRKTRSLTERPFGVGVVLAFPHNENIKAILSEKVAVLQVSWGE- 97 (332)
Q Consensus 24 ~~~la~avs~aGglG~i~~~~-----~~~~e~~~~~i~~~r~~~~~p~gvnl~~~~~~~~~~~~~~~~~~~~I~~~~g~- 97 (332)
..+++.+..++|. ..|.... .... ...+.++++++.++.|+-++-.++. .+.++.+.+.|++.|.+....
T Consensus 32 ~~~~a~~~~~~Ga-~~i~v~d~~~~~~~~g-~~~~~i~~i~~~~~iPvi~~ggi~~--~~~i~~~~~~Gad~v~lg~~~~ 107 (266)
T 2w6r_A 32 LRDWVVEVEKRGA-GEILLTSIDRDGTKSG-YDTEMIRFVRPLTTLPIIASGGAGK--MEHFLEAFLAGADKALAASVFH 107 (266)
T ss_dssp HHHHHHHHHHHTC-SEEEEEETTTSSCSSC-CCHHHHHHHGGGCCSCEEEESCCCS--THHHHHHHHHTCSEEECCCCC-
T ss_pred HHHHHHHHHHCCC-CEEEEEecCcccCCCc-ccHHHHHHHHHhcCCCEEEECCCCC--HHHHHHHHHcCCcHhhhhHHHH
Confidence 4567777777663 3332100 0010 1135567777777889888655543 355777888899999886322
Q ss_pred ----CcHHHHHHHHhCC--C-EE--EEec-------------------CC-HHHHHHHHHcCCCEEEEecCCCCcccCCC
Q 020013 98 ----YSEELVLEAHSAG--V-KV--VPQV-------------------GS-FDEARKAVNAGVDAIIVQGREAGGHVIGQ 148 (332)
Q Consensus 98 ----~~~~~i~~~~~~g--~-~v--~~~v-------------------~s-~~~a~~a~~~g~D~ivv~G~eaGGh~~~~ 148 (332)
.+..+.+.++..+ . .+ ...+ .+ .+.++.+.+.|++.|++.+....|+..+
T Consensus 108 ~~~~~~~~~~~~~~~~g~~~~~i~~~~d~~~~~g~~~v~~~g~~~~~~~~~~e~~~~~~~~G~~~i~~t~~~~~g~~~g- 186 (266)
T 2w6r_A 108 FREIDMRELKEYLKKHGGSGQAVVVAIDAKRVDGEFMVFTHSGKKNTGILLRDWVVEVEKRGAGEILLTSIDRDGTKSG- 186 (266)
T ss_dssp -----CHHHHHHCC----CCCEEEEEEEEEEETTEEEEEETTTTEEEEEEHHHHHHHHHHTTCSEEEEEETTTTTTCSC-
T ss_pred hCCCCHHHHHHHHHHcCCCCCEEEEEEEEEecCCCEEEEECCCceecchhHHHHHHHHHHcCCCEEEEEeecCCCCcCC-
Confidence 2333333333334 1 22 2222 13 4556888999999999977654454322
Q ss_pred CchhhhHHHHHHHhCCCCCcEEeecCcCCHHHHHHHHHcCcceeeeccccccCcc
Q 020013 149 DGLISLLPMVVDLIGDRDIPIIAAGGIVDARGYVAALSLGAQGICLGTRFVASEE 203 (332)
Q Consensus 149 ~~~~~ll~~i~~~~~~~~iPviaaGGI~~~~~v~~al~~GA~gV~~GT~fl~t~E 203 (332)
..+.++.++++.+ ++|||+.|||.+++++.+++.+||+||++||+|+..+.
T Consensus 187 -~~~~~i~~l~~~~---~ipvia~GGI~~~ed~~~~~~~Gadgv~vgsal~~~~~ 237 (266)
T 2w6r_A 187 -YDTEMIRFVRPLT---TLPIIASGGAGKMEHFLEAFLAGADAALAASVFHFREI 237 (266)
T ss_dssp -CCHHHHHHHGGGC---CSCEEEESCCCSHHHHHHHHHHTCSEEEESTTTC----
T ss_pred -CCHHHHHHHHHHc---CCCEEEeCCCCCHHHHHHHHHcCCHHHHccHHHHcCCC
Confidence 2478888888776 79999999999999999999999999999999987653
|
| >3nl6_A Thiamine biosynthetic bifunctional enzyme; thiamin biosynthesis, eukaryoyes, transferase; HET: TPS ACP; 2.61A {Candida glabrata} PDB: 3nl2_A* 3nl5_A* 3nl3_A* 3nm3_A* 3nm1_A* | Back alignment and structure |
|---|
Probab=99.12 E-value=9.3e-10 Score=108.67 Aligned_cols=185 Identities=14% Similarity=0.129 Sum_probs=124.7
Q ss_pred HHHHHHHHhCCCceeecCCC-CCCHHHHHHHHHHHHhhcCCcEEEEeecCCCCHHHHHHHHhcCCcEEEEccCCCcHHHH
Q 020013 25 PELVAAVANAGGLGLLRAPD-WEAPDYLRDLIRKTRSLTERPFGVGVVLAFPHNENIKAILSEKVAVLQVSWGEYSEELV 103 (332)
Q Consensus 25 ~~la~avs~aGglG~i~~~~-~~~~e~~~~~i~~~r~~~~~p~gvnl~~~~~~~~~~~~~~~~~~~~I~~~~g~~~~~~i 103 (332)
.+.+.++.+ ||+.++.... -.+.+++.++.+++++++. .+++-++++ +.++.+.+.++|.|++...+.+...+
T Consensus 28 ~~~ve~al~-~Gv~~vQlR~K~~~~~~~~~~a~~l~~l~~-~~~v~liIN----D~~dlA~~~gAdGVHLgq~dl~~~~a 101 (540)
T 3nl6_A 28 YGQVEAGLQ-NGVTLVQIREKDADTKFFIEEALQIKELCH-AHNVPLIIN----DRIDVAMAIGADGIHVGQDDMPIPMI 101 (540)
T ss_dssp HHHHHHHHH-TTCSEEEECCSSSCTTHHHHHHHHHHHHHH-HTTCCEEEC----SCSHHHHHTTCSEEEECTTSSCHHHH
T ss_pred HHHHHHHHH-CCCCEEEEecCCCCHHHHHHHHHHHHHHHH-hcCCEEEEe----CcHHHHHHcCCCEEEEChhhcCHHHH
Confidence 344444444 5577776521 1244556666666666543 234555554 35678888999999998776676777
Q ss_pred HHHHhCCCEEEEecCCHHHHHHHHHcC---CCEEEEecC-CCCcccCC--CCchhhhHHHHHHHhC---CCCCcEEeecC
Q 020013 104 LEAHSAGVKVVPQVGSFDEARKAVNAG---VDAIIVQGR-EAGGHVIG--QDGLISLLPMVVDLIG---DRDIPIIAAGG 174 (332)
Q Consensus 104 ~~~~~~g~~v~~~v~s~~~a~~a~~~g---~D~ivv~G~-eaGGh~~~--~~~~~~ll~~i~~~~~---~~~iPviaaGG 174 (332)
+++...+..+...++++++++.+.+.| +|||.+-.. ....+... +...+..++++.+.+. ..++|+++.||
T Consensus 102 r~~lg~~~iiG~S~ht~eea~~A~~~G~~~aDYv~~Gpvf~T~tK~~~~~~~~G~~~l~~i~~~~~~~~~~~iPvvAIGG 181 (540)
T 3nl6_A 102 RKLVGPDMVIGWSVGFPEEVDELSKMGPDMVDYIGVGTLFPTLTKKNPKKAPMGTAGAIRVLDALERNNAHWCRTVGIGG 181 (540)
T ss_dssp HHHHCTTSEEEEEECSHHHHHHHHHTCC--CCEEEESCCSCCCCCC----CCCHHHHHHHHHHHHHHTTCTTCEEEEESS
T ss_pred HHHhCCCCEEEEECCCHHHHHHHHHcCCCCCCEEEEcCCCCCCCCCCcCCCCCCHHHHHHHHHHHHhhccCCCCEEEEcC
Confidence 777777889999999999999999999 999998221 11122211 1123666777766531 12799999999
Q ss_pred cCCHHHHHHHHH--------cCcceeeeccccccCccCC-CCHHHHHHHhc
Q 020013 175 IVDARGYVAALS--------LGAQGICLGTRFVASEESY-AHPEYKRKLVE 216 (332)
Q Consensus 175 I~~~~~v~~al~--------~GA~gV~~GT~fl~t~Es~-~~~~~k~~~~~ 216 (332)
| +++++.+++. .||+||.++|+++.++... ....+++.+.+
T Consensus 182 I-~~~ni~~v~~~~~~~g~~~GadgvAVvsaI~~a~dp~~a~~~l~~~~~~ 231 (540)
T 3nl6_A 182 L-HPDNIERVLYQCVSSNGKRSLDGICVVSDIIASLDAAKSTKILRGLIDK 231 (540)
T ss_dssp C-CTTTHHHHHHHCBCTTSSCBCSCEEESHHHHTCTTHHHHHHHHHHHHHC
T ss_pred C-CHHHHHHHHHhhcccccccCceEEEEeHHHhcCCCHHHHHHHHHHHHHh
Confidence 9 8999999998 8999999999999765421 22344444444
|
| >2htm_A Thiazole biosynthesis protein THIG; thiamin biosynthesis, THIG, thermus thermophilus HB8, structural genomics, NPPSFA; 2.30A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.12 E-value=1.9e-10 Score=101.91 Aligned_cols=111 Identities=14% Similarity=0.181 Sum_probs=85.2
Q ss_pred HHHHHHH---HhCCCEEEEe-cCCHHHHHHHHHcCCCEEEEecCCCCcccCCCCchhhhHHHHHH-HhCCCC-CcEEeec
Q 020013 100 EELVLEA---HSAGVKVVPQ-VGSFDEARKAVNAGVDAIIVQGREAGGHVIGQDGLISLLPMVVD-LIGDRD-IPIIAAG 173 (332)
Q Consensus 100 ~~~i~~~---~~~g~~v~~~-v~s~~~a~~a~~~g~D~ivv~G~eaGGh~~~~~~~~~ll~~i~~-~~~~~~-iPviaaG 173 (332)
.+.++.. .+.|.++++. ..++..++++.+.|+|+|.--|..-|+.. + .....+++.+++ .. + +|||++|
T Consensus 111 ~~tv~aa~~L~k~Gf~Vlpy~~~D~~~ak~l~~~G~~aVmPlg~pIGsG~-G-i~~~~~L~~i~~~~~---~~vPVI~~G 185 (268)
T 2htm_A 111 LETLKAAERLIEEDFLVLPYMGPDLVLAKRLAALGTATVMPLAAPIGSGW-G-VRTRALLELFAREKA---SLPPVVVDA 185 (268)
T ss_dssp HHHHHHHHHHHHTTCEECCEECSCHHHHHHHHHHTCSCBEEBSSSTTTCC-C-STTHHHHHHHHHTTT---TSSCBEEES
T ss_pred HHHHHHHHHHHHCCCEEeeccCCCHHHHHHHHhcCCCEEEecCccCcCCc-c-cCCHHHHHHHHHhcC---CCCeEEEeC
Confidence 3455544 4569999964 46899999999999999977676666532 2 234677888887 44 6 9999999
Q ss_pred CcCCHHHHHHHHHcCcceeeeccccccCccCCC--CHHHHHHHhc
Q 020013 174 GIVDARGYVAALSLGAQGICLGTRFVASEESYA--HPEYKRKLVE 216 (332)
Q Consensus 174 GI~~~~~v~~al~~GA~gV~~GT~fl~t~Es~~--~~~~k~~~~~ 216 (332)
||++++|++.++.+|||||++||++..+ +++. ...+++++..
T Consensus 186 GI~tpsDAa~AmeLGAdgVlVgSAI~~a-~dP~~ma~af~~Av~a 229 (268)
T 2htm_A 186 GLGLPSHAAEVMELGLDAVLVNTAIAEA-QDPPAMAEAFRLAVEA 229 (268)
T ss_dssp CCCSHHHHHHHHHTTCCEEEESHHHHTS-SSHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHcCCCEEEEChHHhCC-CCHHHHHHHHHHHHHH
Confidence 9999999999999999999999999844 3343 5666666654
|
| >1qop_A Tryptophan synthase alpha chain; lyase, carbon-oxygen lyase, tryptophan biosynthesis, pyridoxal phosphate; HET: IPL PLP; 1.4A {Salmonella typhimurium} SCOP: c.1.2.4 PDB: 1k8x_A* 1wbj_A* 2clk_A* 2j9z_A* 3cep_A* 1k8y_A* 1a5s_A* 1a50_A* 1c29_A* 1c8v_A* 1c9d_A* 1bks_A* 1cx9_A* 1fuy_A* 1cw2_A* 1k7e_A* 1k7f_A* 1k7x_A* 1k3u_A* 1k8z_A* ... | Back alignment and structure |
|---|
Probab=99.10 E-value=3.2e-09 Score=96.07 Aligned_cols=148 Identities=17% Similarity=0.105 Sum_probs=102.4
Q ss_pred HHHHHHHHhh-cCCcEEEEeecC----CCCHHHHHHHHhcCCcEEEEccCCC---cHHHHHHHHhCCCEEEEec---CCH
Q 020013 52 RDLIRKTRSL-TERPFGVGVVLA----FPHNENIKAILSEKVAVLQVSWGEY---SEELVLEAHSAGVKVVPQV---GSF 120 (332)
Q Consensus 52 ~~~i~~~r~~-~~~p~gvnl~~~----~~~~~~~~~~~~~~~~~I~~~~g~~---~~~~i~~~~~~g~~v~~~v---~s~ 120 (332)
-+.++++|+. ++.|+.+-...+ .+.+..++.+.+.|+|.+.++ ..+ ..++++.+++.|++++..+ ++.
T Consensus 82 ~~~v~~ir~~~~~~Pv~lm~y~n~v~~~g~~~~~~~~~~aGadgii~~-d~~~e~~~~~~~~~~~~g~~~i~l~~p~t~~ 160 (268)
T 1qop_A 82 FEMLAIIREKHPTIPIGLLMYANLVFNNGIDAFYARCEQVGVDSVLVA-DVPVEESAPFRQAALRHNIAPIFICPPNADD 160 (268)
T ss_dssp HHHHHHHHHHCSSSCEEEEECHHHHHTTCHHHHHHHHHHHTCCEEEET-TCCGGGCHHHHHHHHHTTCEEECEECTTCCH
T ss_pred HHHHHHHHhcCCCCCEEEEEcccHHHHhhHHHHHHHHHHcCCCEEEEc-CCCHHHHHHHHHHHHHcCCcEEEEECCCCCH
Confidence 3678888887 788866521111 123577888999999998887 332 3467888899998765433 345
Q ss_pred HHHHHHHHcCCCEEEEecCC-CCcccCC-CCchhhhHHHHHHHhCCCCCcEEeecCcCCHHHHHHHHHcCcceeeecccc
Q 020013 121 DEARKAVNAGVDAIIVQGRE-AGGHVIG-QDGLISLLPMVVDLIGDRDIPIIAAGGIVDARGYVAALSLGAQGICLGTRF 198 (332)
Q Consensus 121 ~~a~~a~~~g~D~ivv~G~e-aGGh~~~-~~~~~~ll~~i~~~~~~~~iPviaaGGI~~~~~v~~al~~GA~gV~~GT~f 198 (332)
+.++...+...+++.+.... .+|.... ......++.++++.. ++||++.|||++++++.+++..|||+|++||++
T Consensus 161 ~~i~~i~~~~~g~v~~~s~~G~tG~~~~~~~~~~~~i~~lr~~~---~~pi~vggGI~t~e~~~~~~~agAD~vVVGSai 237 (268)
T 1qop_A 161 DLLRQVASYGRGYTYLLSRSGVTGAENRGALPLHHLIEKLKEYH---AAPALQGFGISSPEQVSAAVRAGAAGAISGSAI 237 (268)
T ss_dssp HHHHHHHHHCCSCEEEESSSSCCCSSSCC--CCHHHHHHHHHTT---CCCEEEESSCCSHHHHHHHHHTTCSEEEECHHH
T ss_pred HHHHHHHhhCCCcEEEEecCCcCCCccCCCchHHHHHHHHHhcc---CCcEEEECCCCCHHHHHHHHHcCCCEEEEChHH
Confidence 66666666555555554332 2232211 123467888888765 799999999988999999999999999999999
Q ss_pred ccCcc
Q 020013 199 VASEE 203 (332)
Q Consensus 199 l~t~E 203 (332)
....|
T Consensus 238 ~~~~~ 242 (268)
T 1qop_A 238 VKIIE 242 (268)
T ss_dssp HHHHH
T ss_pred hhhHh
Confidence 87754
|
| >4a29_A Engineered retro-aldol enzyme RA95.0; de novo protein, engineered enzyme, retro-aldolase, directed evolution; HET: 3NK MLT; 1.10A {Synthetic construct} PDB: 4a2s_A* 4a2r_A* 3tc7_A 3tc6_A 3nl8_A* 3nxf_A* 3o6y_X 3ud6_A* 1igs_A 1juk_A 1jul_A* 3hoj_A 1a53_A* 1lbf_A* 1lbl_A* 3nyz_A 3nz1_A* 3uy7_A 3uxd_A* 3uxa_A* ... | Back alignment and structure |
|---|
Probab=99.10 E-value=5.1e-09 Score=92.60 Aligned_cols=169 Identities=14% Similarity=0.136 Sum_probs=118.6
Q ss_pred cHHHHHHHHhCCC--ceeecCCCCC--CHHHHHHHHHHHHhhcCCcEEEEeecCCCCHHHHHHHHhcCCcEEEEccCCCc
Q 020013 24 GPELVAAVANAGG--LGLLRAPDWE--APDYLRDLIRKTRSLTERPFGVGVVLAFPHNENIKAILSEKVAVLQVSWGEYS 99 (332)
Q Consensus 24 ~~~la~avs~aGg--lG~i~~~~~~--~~e~~~~~i~~~r~~~~~p~gvnl~~~~~~~~~~~~~~~~~~~~I~~~~g~~~ 99 (332)
+|.-.+...++|+ +.++.-..|. +.+. +..+|+.++.|+--.=|+. ++-++..+...|+|+|.+-....+
T Consensus 65 dp~~iA~~~~~GA~aiSVLTd~~~F~Gs~~~----L~~vr~~v~lPvLrKDFii--d~yQI~eAr~~GADaILLI~a~L~ 138 (258)
T 4a29_A 65 DPIEYAKFMERYAVGLSITTEEKYFNGSYET----LRKIASSVSIPILMSDFIV--KESQIDDAYNLGADTVLLIVKILT 138 (258)
T ss_dssp CHHHHHHHHTTTCSEEEEECCSTTTCCCHHH----HHHHHTTCSSCEEEESCCC--SHHHHHHHHHHTCSEEEEEGGGSC
T ss_pred CHHHHHHHHhCCCeEEEEeCCCCCCCCCHHH----HHHHHHhcCCCEeeccccc--cHHHHHHHHHcCCCeeehHHhhcC
Confidence 4544444445553 4444333222 3444 5667777788875543333 245677788899999987543333
Q ss_pred H----HHHHHHHhCCCEEEEecCCHHHHHHHHHcCCCEEEEecCCCCcccCCCCchhhhHHHHHHHhCCCCCcEEeecCc
Q 020013 100 E----ELVLEAHSAGVKVVPQVGSFDEARKAVNAGVDAIIVQGREAGGHVIGQDGLISLLPMVVDLIGDRDIPIIAAGGI 175 (332)
Q Consensus 100 ~----~~i~~~~~~g~~v~~~v~s~~~a~~a~~~g~D~ivv~G~eaGGh~~~~~~~~~ll~~i~~~~~~~~iPviaaGGI 175 (332)
. ++.+..++.|+.++..|++.+|...+.+.|++.|-+.++.-... . ..+....++.+.++. ++.+|+.+||
T Consensus 139 ~~~l~~l~~~A~~lGl~~LvEVh~~~El~rAl~~~a~iIGINNRnL~tf---~-vdl~~t~~L~~~ip~-~~~~VsESGI 213 (258)
T 4a29_A 139 ERELESLLEYARSYGMEPLILINDENDLDIALRIGARFIGIMSRDFETG---E-INKENQRKLISMIPS-NVVKVAKLGI 213 (258)
T ss_dssp HHHHHHHHHHHHHTTCCCEEEESSHHHHHHHHHTTCSEEEECSBCTTTC---C-BCHHHHHHHHTTSCT-TSEEEEEESS
T ss_pred HHHHHHHHHHHHHHhHHHHHhcchHHHHHHHhcCCCcEEEEeCCCcccc---c-cCHHHHHHHHhhCCC-CCEEEEcCCC
Confidence 2 45666778899999999999999999999999998877643221 1 223334455554443 6889999999
Q ss_pred CCHHHHHHHHHcCcceeeeccccccCcc
Q 020013 176 VDARGYVAALSLGAQGICLGTRFVASEE 203 (332)
Q Consensus 176 ~~~~~v~~al~~GA~gV~~GT~fl~t~E 203 (332)
.+++++..+...|+++|.+|++||.+++
T Consensus 214 ~t~~dv~~l~~~G~~a~LVGealmr~~d 241 (258)
T 4a29_A 214 SERNEIEELRKLGVNAFLISSSLMRNPE 241 (258)
T ss_dssp CCHHHHHHHHHTTCCEEEECHHHHHCTT
T ss_pred CCHHHHHHHHHCCCCEEEECHHHhCCCc
Confidence 9999999999999999999999998764
|
| >1ujp_A Tryptophan synthase alpha chain; riken structural genomics/P initiative, RSGI, structural genomics, lyase; HET: CIT; 1.34A {Thermus thermophilus} SCOP: c.1.2.4 PDB: 1wxj_A* | Back alignment and structure |
|---|
Probab=99.10 E-value=7e-10 Score=100.40 Aligned_cols=151 Identities=17% Similarity=0.184 Sum_probs=97.9
Q ss_pred CHHHHHHHHHHHHhhcCCcEEE----EeecCCCCHHHHHHHHhcCCcEEEEccCCC---cHHHHHHHHhCCCEEEEec--
Q 020013 47 APDYLRDLIRKTRSLTERPFGV----GVVLAFPHNENIKAILSEKVAVLQVSWGEY---SEELVLEAHSAGVKVVPQV-- 117 (332)
Q Consensus 47 ~~e~~~~~i~~~r~~~~~p~gv----nl~~~~~~~~~~~~~~~~~~~~I~~~~g~~---~~~~i~~~~~~g~~v~~~v-- 117 (332)
+.+.+.+.++++|+..+.|+.+ |.+.....+..++.+.+.|+|.+.+. +.+ ..++++.+++.|+..+..+
T Consensus 75 ~~~~~~~~v~~ir~~~~~Pii~m~y~n~v~~~g~~~f~~~~~~aG~dGviv~-Dl~~ee~~~~~~~~~~~gl~~i~liap 153 (271)
T 1ujp_A 75 SVQGALELVREVRALTEKPLFLMTYLNPVLAWGPERFFGLFKQAGATGVILP-DLPPDEDPGLVRLAQEIGLETVFLLAP 153 (271)
T ss_dssp CHHHHHHHHHHHHHHCCSCEEEECCHHHHHHHCHHHHHHHHHHHTCCEEECT-TCCGGGCHHHHHHHHHHTCEEECEECT
T ss_pred CHHHHHHHHHHHHhcCCCCEEEEecCcHHHHhhHHHHHHHHHHcCCCEEEec-CCCHHHHHHHHHHHHHcCCceEEEeCC
Confidence 4455667788888777889887 31111123567888999999977765 222 3467788888887655433
Q ss_pred -CCHHHHHHHHHcCCCEEEEecC-CCCcccCC-CCchhhhHHHHHHHhCCCCCcEEeecCcCCHHHHHHHHHcCcceeee
Q 020013 118 -GSFDEARKAVNAGVDAIIVQGR-EAGGHVIG-QDGLISLLPMVVDLIGDRDIPIIAAGGIVDARGYVAALSLGAQGICL 194 (332)
Q Consensus 118 -~s~~~a~~a~~~g~D~ivv~G~-eaGGh~~~-~~~~~~ll~~i~~~~~~~~iPviaaGGI~~~~~v~~al~~GA~gV~~ 194 (332)
++.+.++...+.+..++.+... ...|...+ ......++.++++.. ++||++.|||++++++.++ .|||||++
T Consensus 154 ~s~~eri~~ia~~~~gfiy~vs~~G~TG~~~~~~~~~~~~v~~vr~~~---~~Pv~vGfGI~t~e~a~~~--~~ADgVIV 228 (271)
T 1ujp_A 154 TSTDARIATVVRHATGFVYAVSVTGVTGMRERLPEEVKDLVRRIKART---ALPVAVGFGVSGKATAAQA--AVADGVVV 228 (271)
T ss_dssp TCCHHHHHHHHTTCCSCEEEECC------------CCHHHHHHHHTTC---CSCEEEESCCCSHHHHHHH--TTSSEEEE
T ss_pred CCCHHHHHHHHHhCCCCEEEEecCcccCCCCCCCccHHHHHHHHHhhc---CCCEEEEcCCCCHHHHHHh--cCCCEEEE
Confidence 3456555555444444433211 11121101 123357788887765 7999999999999999996 89999999
Q ss_pred ccccccCcc
Q 020013 195 GTRFVASEE 203 (332)
Q Consensus 195 GT~fl~t~E 203 (332)
||+|....|
T Consensus 229 GSAi~~~~~ 237 (271)
T 1ujp_A 229 GSALVRALE 237 (271)
T ss_dssp CHHHHHHHH
T ss_pred ChHHhcccc
Confidence 999987654
|
| >2qjg_A Putative aldolase MJ0400; beta-alpha barrel, lyase; HET: F2P; 2.60A {Methanocaldococcus jannaschii} PDB: 2qjh_A 2qji_A | Back alignment and structure |
|---|
Probab=99.09 E-value=3.8e-10 Score=102.30 Aligned_cols=172 Identities=17% Similarity=0.264 Sum_probs=115.8
Q ss_pred CccceecCCCCCCCCcHH-HHHHHHhCCCceeecCCCCCCHHHHHHHHHHHHh-h-cCCcEEEEeecCC-----C-C---
Q 020013 9 FEYGIVQAPLGPDISGPE-LVAAVANAGGLGLLRAPDWEAPDYLRDLIRKTRS-L-TERPFGVGVVLAF-----P-H--- 76 (332)
Q Consensus 9 ~~~Pii~apM~~g~s~~~-la~avs~aGglG~i~~~~~~~~e~~~~~i~~~r~-~-~~~p~gvnl~~~~-----~-~--- 76 (332)
+++|++.+||. +..++. ++.+..+.|.-+++. ++.. +..+++ . .+.|+.+++.... + .
T Consensus 32 id~~~~l~p~~-~~~~~~~~~~~~~~~g~~~i~~-----~~~~----~~~~~~~~~~~~~~~v~~~~~~~~~~d~~~~~~ 101 (273)
T 2qjg_A 32 MDHGVSNGPIK-GLIDIRKTVNDVAEGGANAVLL-----HKGI----VRHGHRGYGKDVGLIIHLSGGTAISPNPLKKVI 101 (273)
T ss_dssp CCHHHHHCSCT-TSSSHHHHHHHHHHHTCSEEEE-----CHHH----HHSCCCSSSCCCEEEEECEECCTTSSSTTCCEE
T ss_pred cccccccCCCc-chhhHHHHHHHHHhcCCCEEEe-----CHHH----HHHHHHhhcCCCCEEEEEcCCCcCCCCcccchH
Confidence 78899999997 677775 666666666555542 2221 222222 1 2457777664322 1 1
Q ss_pred HHHHHHHHhcCCcEE--EEccCCCcH--------HHHHHHHhCCCEEEEec----------CCH---HHH-HHHHHcCCC
Q 020013 77 NENIKAILSEKVAVL--QVSWGEYSE--------ELVLEAHSAGVKVVPQV----------GSF---DEA-RKAVNAGVD 132 (332)
Q Consensus 77 ~~~~~~~~~~~~~~I--~~~~g~~~~--------~~i~~~~~~g~~v~~~v----------~s~---~~a-~~a~~~g~D 132 (332)
.+.++.+++.|++.| ++..+..+. ++++.+++.|++++..+ .+. +++ +.+.+.|+|
T Consensus 102 ~~~v~~a~~~Ga~~v~~~l~~~~~~~~~~~~~~~~v~~~~~~~g~~viv~~~~~G~~l~~~~~~~~~~~~a~~a~~~Gad 181 (273)
T 2qjg_A 102 VTTVEEAIRMGADAVSIHVNVGSDEDWEAYRDLGMIAETCEYWGMPLIAMMYPRGKHIQNERDPELVAHAARLGAELGAD 181 (273)
T ss_dssp CSCHHHHHHTTCSEEEEEEEETSTTHHHHHHHHHHHHHHHHHHTCCEEEEEEECSTTCSCTTCHHHHHHHHHHHHHTTCS
T ss_pred HHHHHHHHHcCCCEEEEEEecCCCCHHHHHHHHHHHHHHHHHcCCCEEEEeCCCCcccCCCCCHhHHHHHHHHHHHcCCC
Confidence 356778889999999 655554432 23444556688887655 333 454 778899999
Q ss_pred EEEEecCCCCcccCCCCchhhhHHHHHHHhCCCCCcEEeecCcCC--HHH----HHHHHHcCcceeeeccccccCcc
Q 020013 133 AIIVQGREAGGHVIGQDGLISLLPMVVDLIGDRDIPIIAAGGIVD--ARG----YVAALSLGAQGICLGTRFVASEE 203 (332)
Q Consensus 133 ~ivv~G~eaGGh~~~~~~~~~ll~~i~~~~~~~~iPviaaGGI~~--~~~----v~~al~~GA~gV~~GT~fl~t~E 203 (332)
+|.+.. . ..+.++.++.+.+ ++||++.|||.+ .++ +.+++.+||+||.+||.++.++.
T Consensus 182 ~i~~~~------~----~~~~~l~~i~~~~---~ipvva~GGi~~~~~~~~~~~~~~~~~~Ga~gv~vg~~i~~~~~ 245 (273)
T 2qjg_A 182 IVKTSY------T----GDIDSFRDVVKGC---PAPVVVAGGPKTNTDEEFLQMIKDAMEAGAAGVAVGRNIFQHDD 245 (273)
T ss_dssp EEEECC------C----SSHHHHHHHHHHC---SSCEEEECCSCCSSHHHHHHHHHHHHHHTCSEEECCHHHHTSSS
T ss_pred EEEECC------C----CCHHHHHHHHHhC---CCCEEEEeCCCCCCHHHHHHHHHHHHHcCCcEEEeeHHhhCCCC
Confidence 998741 1 2367788888776 799999999974 666 77777899999999999987653
|
| >3cu2_A Ribulose-5-phosphate 3-epimerase; YP_718263.1, ribulose-PHOS epimerase family, structural genomics, joint center for STR genomics, JCSG; 1.91A {Haemophilus somnus} | Back alignment and structure |
|---|
Probab=99.05 E-value=2.7e-10 Score=101.01 Aligned_cols=144 Identities=10% Similarity=0.001 Sum_probs=107.4
Q ss_pred HHHHHHHhhcCCcEEEEeecCCCCHHHHHHHHhcCCcEEEEccCC--CcHHHHHHHHhC---------CCEEEEec--CC
Q 020013 53 DLIRKTRSLTERPFGVGVVLAFPHNENIKAILSEKVAVLQVSWGE--YSEELVLEAHSA---------GVKVVPQV--GS 119 (332)
Q Consensus 53 ~~i~~~r~~~~~p~gvnl~~~~~~~~~~~~~~~~~~~~I~~~~g~--~~~~~i~~~~~~---------g~~v~~~v--~s 119 (332)
..++.+|+.++. .+.+++..+ +.+++.+.+.|+|.|.+|.+. .+.+.++.+++. |+++...+ .|
T Consensus 61 ~~v~~lr~~~~~--DvhLMv~~p-~~~i~~~~~aGAd~itvH~ea~~~~~~~i~~i~~~~~~~~~~~~g~~~gv~l~p~T 137 (237)
T 3cu2_A 61 IGIKYFPTHCFK--DVHLMVRNQ-LEVAKAVVANGANLVTLQLEQYHDFALTIEWLAKQKTTYANQVYPVLIGACLCPET 137 (237)
T ss_dssp HHHHTSCTTSEE--EEEEECSCH-HHHHHHHHHTTCSEEEEETTCTTSHHHHHHHHTTCEEEETTEEEECEEEEEECTTS
T ss_pred HHHHHHhhhCCC--CeEEEEECH-HHHHHHHHHcCCCEEEEecCCcccHHHHHHHHHhcccccccccCCceEEEEEeCCC
Confidence 346667766543 899998766 678999999999999998543 345778888888 88888766 45
Q ss_pred HHHHHHHHHcCCCEEEEe--cCCCCcccCCCCchhhhHHHHHHHhCC--CCCcEEeecCcCCHHHHHHHHH--cCcceee
Q 020013 120 FDEARKAVNAGVDAIIVQ--GREAGGHVIGQDGLISLLPMVVDLIGD--RDIPIIAAGGIVDARGYVAALS--LGAQGIC 193 (332)
Q Consensus 120 ~~~a~~a~~~g~D~ivv~--G~eaGGh~~~~~~~~~ll~~i~~~~~~--~~iPviaaGGI~~~~~v~~al~--~GA~gV~ 193 (332)
+.+....+..++|+|.+- ++..||... ....+..+.++++.... .++||.+.||| +.+++..+.. +|||+++
T Consensus 138 p~~~l~~~l~~~D~vlvMsv~pgfggq~f-~~~~l~ki~~lr~~~~~~~~~~~I~vdGGI-~~~~~~~~~~~~aGad~~V 215 (237)
T 3cu2_A 138 PISELEPYLDQIDVIQLLTLDPRNGTKYP-SELILDRVIQVEKRLGNRRVEKLINIDGSM-TLELAKYFKQGTHQIDWLV 215 (237)
T ss_dssp CGGGGTTTTTTCSEEEEESEETTTTEECC-HHHHHHHHHHHHHHHGGGGGGCEEEEESSC-CHHHHHHHHHSSSCCCCEE
T ss_pred hHHHHHHHhhcCceeeeeeeccCcCCeec-ChhHHHHHHHHHHHHHhcCCCceEEEECCc-CHHHHHHHHHhCCCCcEEE
Confidence 555555555689999773 444455532 22346667777766531 15899999999 8999999999 9999999
Q ss_pred eccccccC
Q 020013 194 LGTRFVAS 201 (332)
Q Consensus 194 ~GT~fl~t 201 (332)
+||+++.+
T Consensus 216 vGSaIf~~ 223 (237)
T 3cu2_A 216 SGSALFSG 223 (237)
T ss_dssp ECGGGGSS
T ss_pred EeeHHhCC
Confidence 99999865
|
| >1qo2_A Molecule: N-((5-phosphoribosyl)-formimino)-5-aminoimidazol- 4-carboxamid ribonucleotid...; isomerase, histidine biosynthesis; 1.85A {Thermotoga maritima} SCOP: c.1.2.1 PDB: 2cff_A 2w79_A | Back alignment and structure |
|---|
Probab=99.05 E-value=1e-09 Score=97.62 Aligned_cols=170 Identities=16% Similarity=0.161 Sum_probs=111.9
Q ss_pred CcHHHHHHHHhCCCceeecCCCC-----CCHHHHHHHHHHHHhhcCCcEEEEeecCCCCHHHHHHHHhcCCcEEEEccCC
Q 020013 23 SGPELVAAVANAGGLGLLRAPDW-----EAPDYLRDLIRKTRSLTERPFGVGVVLAFPHNENIKAILSEKVAVLQVSWGE 97 (332)
Q Consensus 23 s~~~la~avs~aGglG~i~~~~~-----~~~e~~~~~i~~~r~~~~~p~gvnl~~~~~~~~~~~~~~~~~~~~I~~~~g~ 97 (332)
...+++.+..++|. ..|..... .... ..+.+++++ ..+.|+-++=.+. ..+.++.+++.|+|.|.+....
T Consensus 31 ~~~~~a~~~~~~Ga-d~i~v~d~~~~~~~~~~-~~~~i~~i~-~~~ipvi~~Ggi~--~~~~~~~~~~~Gad~V~lg~~~ 105 (241)
T 1qo2_A 31 DPVELVEKLIEEGF-TLIHVVDLSNAIENSGE-NLPVLEKLS-EFAEHIQIGGGIR--SLDYAEKLRKLGYRRQIVSSKV 105 (241)
T ss_dssp CHHHHHHHHHHTTC-CCEEEEEHHHHHHCCCT-THHHHHHGG-GGGGGEEEESSCC--SHHHHHHHHHTTCCEEEECHHH
T ss_pred CHHHHHHHHHHcCC-CEEEEecccccccCCch-hHHHHHHHH-hcCCcEEEECCCC--CHHHHHHHHHCCCCEEEECchH
Confidence 34577777777663 22321000 0000 123455555 4567877654443 2567778888999999885321
Q ss_pred -CcHHHHHHHHhCCCE--EEEec---------------CCH-HHHHHHHHcCCCEEEEecCCCCcccCCCCchhhhHHHH
Q 020013 98 -YSEELVLEAHSAGVK--VVPQV---------------GSF-DEARKAVNAGVDAIIVQGREAGGHVIGQDGLISLLPMV 158 (332)
Q Consensus 98 -~~~~~i~~~~~~g~~--v~~~v---------------~s~-~~a~~a~~~g~D~ivv~G~eaGGh~~~~~~~~~ll~~i 158 (332)
..+++++.++..|-. +...+ .+. +.++.+.+.|++.|++.+....|+..+ ..+.++.++
T Consensus 106 l~~p~~~~~~~~~g~~i~~~~d~~~~~v~~~g~~~~~~~~~~e~~~~~~~~G~~~i~~t~~~~~g~~~g--~~~~~i~~l 183 (241)
T 1qo2_A 106 LEDPSFLKSLREIDVEPVFSLDTRGGRVAFKGWLAEEEIDPVSLLKRLKEYGLEEIVHTEIEKDGTLQE--HDFSLTKKI 183 (241)
T ss_dssp HHCTTHHHHHHTTTCEEEEEEEEETTEECCTTCSSCSCCCHHHHHHHHHTTTCCEEEEEETTHHHHTCC--CCHHHHHHH
T ss_pred hhChHHHHHHHHcCCcEEEEEEecCCEEEECCceecCCCCHHHHHHHHHhCCCCEEEEEeecccccCCc--CCHHHHHHH
Confidence 011344445544433 22344 144 446788999999999987655454322 248899999
Q ss_pred HHHhCCCCCcEEeecCcCCHHHHHHHHHc-----C-cceeeeccccccCc
Q 020013 159 VDLIGDRDIPIIAAGGIVDARGYVAALSL-----G-AQGICLGTRFVASE 202 (332)
Q Consensus 159 ~~~~~~~~iPviaaGGI~~~~~v~~al~~-----G-A~gV~~GT~fl~t~ 202 (332)
++.+ ++|||+.|||++++++.+++.+ | ||||++||+|+..+
T Consensus 184 ~~~~---~iPvia~GGI~~~~d~~~~~~~~~~~~G~adgv~vgsal~~~~ 230 (241)
T 1qo2_A 184 AIEA---EVKVLAAGGISSENSLKTAQKVHTETNGLLKGVIVGRAFLEGI 230 (241)
T ss_dssp HHHH---TCEEEEESSCCSHHHHHHHHHHHHHTTTSEEEEEECHHHHTTS
T ss_pred HHhc---CCcEEEECCCCCHHHHHHHHhcccccCCeEeEEEeeHHHHcCC
Confidence 9887 7999999999999999999998 9 99999999998663
|
| >3jr2_A Hexulose-6-phosphate synthase SGBH; 3-keto-L-gulonate-6-phosphate decarboxylase, ULAD, niaid,CSG bound, biosynthetic protein; HET: MSE; 1.80A {Vibrio cholerae} SCOP: c.1.2.0 PDB: 3ieb_A* | Back alignment and structure |
|---|
Probab=99.04 E-value=8.6e-10 Score=96.76 Aligned_cols=143 Identities=11% Similarity=0.067 Sum_probs=95.9
Q ss_pred HHHHHHHhh-cCCcEEEEeecCCCCHHHHHHHHhcCCcEEEEccCCCc---HHHHHHHHhCCCEEEE---ecCCHHHHHH
Q 020013 53 DLIRKTRSL-TERPFGVGVVLAFPHNENIKAILSEKVAVLQVSWGEYS---EELVLEAHSAGVKVVP---QVGSFDEARK 125 (332)
Q Consensus 53 ~~i~~~r~~-~~~p~gvnl~~~~~~~~~~~~~~~~~~~~I~~~~g~~~---~~~i~~~~~~g~~v~~---~v~s~~~a~~ 125 (332)
+.++++|+. ++.|+...+-+......+++.+.+.|+|+|.+|..... .++++.+++.|++.+. .+.|.++++.
T Consensus 48 ~~i~~lr~~~~~~~i~ld~~l~d~p~~~~~~~~~aGad~i~vh~~~~~~~~~~~~~~~~~~g~~~~~d~l~~~T~~~~~~ 127 (218)
T 3jr2_A 48 KAVSTLRHNHPNHILVCDMKTTDGGAILSRMAFEAGADWITVSAAAHIATIAACKKVADELNGEIQIEIYGNWTMQDAKA 127 (218)
T ss_dssp HHHHHHHHHCTTSEEEEEEEECSCHHHHHHHHHHHTCSEEEEETTSCHHHHHHHHHHHHHHTCEEEEECCSSCCHHHHHH
T ss_pred HHHHHHHHhCCCCcEEEEEeecccHHHHHHHHHhcCCCEEEEecCCCHHHHHHHHHHHHHhCCccceeeeecCCHHHHHH
Confidence 456667765 45555443333222255678889999999999943221 2455667788988753 4457788888
Q ss_pred HHHcCCCEEEE-ecCCCC--cccCCCCchhhhHHHHHHHhCCCCCcEEeecCcCCHHHHHHHHHcCcceeeeccccccC
Q 020013 126 AVNAGVDAIIV-QGREAG--GHVIGQDGLISLLPMVVDLIGDRDIPIIAAGGIVDARGYVAALSLGAQGICLGTRFVAS 201 (332)
Q Consensus 126 a~~~g~D~ivv-~G~eaG--Gh~~~~~~~~~ll~~i~~~~~~~~iPviaaGGI~~~~~v~~al~~GA~gV~~GT~fl~t 201 (332)
+.+.|+|++++ .+...+ |... ....+..++++.. . ++|+++.||| +++++.+++.+|||++++||+++.+
T Consensus 128 ~~~~g~d~v~~~~~~~~~~~g~~~-~~~~l~~i~~~~~-~---~~pi~v~GGI-~~~~~~~~~~aGAd~vvvGsaI~~a 200 (218)
T 3jr2_A 128 WVDLGITQAIYHRSRDAELAGIGW-TTDDLDKMRQLSA-L---GIELSITGGI-VPEDIYLFEGIKTKTFIAGRALAGA 200 (218)
T ss_dssp HHHTTCCEEEEECCHHHHHHTCCS-CHHHHHHHHHHHH-T---TCEEEEESSC-CGGGGGGGTTSCEEEEEESGGGSHH
T ss_pred HHHcCccceeeeeccccccCCCcC-CHHHHHHHHHHhC-C---CCCEEEECCC-CHHHHHHHHHcCCCEEEEchhhcCC
Confidence 88889999876 332221 2210 1122334444432 2 6999999999 7999999999999999999998865
|
| >3ajx_A 3-hexulose-6-phosphate synthase; HPS, OMPDC suprafamily, LYA; 1.60A {Mycobacterium gastri} | Back alignment and structure |
|---|
Probab=99.03 E-value=5e-09 Score=90.82 Aligned_cols=142 Identities=14% Similarity=0.100 Sum_probs=97.6
Q ss_pred HHHHHHHhhc-CCcEEEEeecCCCCHHHHHHHHhcCCcEEEEccCCC---cHHHHHHHHhCCCEEEEecC---CHHH-HH
Q 020013 53 DLIRKTRSLT-ERPFGVGVVLAFPHNENIKAILSEKVAVLQVSWGEY---SEELVLEAHSAGVKVVPQVG---SFDE-AR 124 (332)
Q Consensus 53 ~~i~~~r~~~-~~p~gvnl~~~~~~~~~~~~~~~~~~~~I~~~~g~~---~~~~i~~~~~~g~~v~~~v~---s~~~-a~ 124 (332)
+.++++|+.+ +.|+-+.+++.+..+.+++.+.+.|+|+|.+|.... ..+..+.+++.|.++...+. ++.+ +.
T Consensus 42 ~~i~~l~~~~~~~~i~~~l~~~di~~~~~~~a~~~Gad~v~vh~~~~~~~~~~~~~~~~~~g~~~gv~~~s~~~p~~~~~ 121 (207)
T 3ajx_A 42 SVITAVKKAHPDKIVFADMKTMDAGELEADIAFKAGADLVTVLGSADDSTIAGAVKAAQAHNKGVVVDLIGIEDKATRAQ 121 (207)
T ss_dssp HHHHHHHHHSTTSEEEEEEEECSCHHHHHHHHHHTTCSEEEEETTSCHHHHHHHHHHHHHHTCEEEEECTTCSSHHHHHH
T ss_pred HHHHHHHHhCCCCeEEEEEEecCccHHHHHHHHhCCCCEEEEeccCChHHHHHHHHHHHHcCCceEEEEecCCChHHHHH
Confidence 3466676665 678888888764225568889999999999885432 12345666667888755553 5555 56
Q ss_pred HHHHcCCCEE-EEecCCC--CcccCCCCchhhhHHHHHHHhCCCCCcEEeecCcCCHHHHHHHHHcCcceeeeccccccC
Q 020013 125 KAVNAGVDAI-IVQGREA--GGHVIGQDGLISLLPMVVDLIGDRDIPIIAAGGIVDARGYVAALSLGAQGICLGTRFVAS 201 (332)
Q Consensus 125 ~a~~~g~D~i-vv~G~ea--GGh~~~~~~~~~ll~~i~~~~~~~~iPviaaGGI~~~~~v~~al~~GA~gV~~GT~fl~t 201 (332)
.+.+.|+|+| +.-+... .|. .... ..++++... ++|+++.||| +++++.++++.|||+|.+||+++.+
T Consensus 122 ~~~~~g~d~v~~~~~~~~~~~g~---~~~~-~~i~~~~~~----~~pi~v~GGI-~~~~~~~~~~aGad~vvvGsaI~~~ 192 (207)
T 3ajx_A 122 EVRALGAKFVEMHAGLDEQAKPG---FDLN-GLLAAGEKA----RVPFSVAGGV-KVATIPAVQKAGAEVAVAGGAIYGA 192 (207)
T ss_dssp HHHHTTCSEEEEECCHHHHTSTT---CCTH-HHHHHHHHH----TSCEEEESSC-CGGGHHHHHHTTCSEEEESHHHHTS
T ss_pred HHHHhCCCEEEEEecccccccCC---CchH-HHHHHhhCC----CCCEEEECCc-CHHHHHHHHHcCCCEEEEeeeccCC
Confidence 6667899999 5434321 121 1111 444444432 4899999999 6999999999999999999999876
Q ss_pred cc
Q 020013 202 EE 203 (332)
Q Consensus 202 ~E 203 (332)
+.
T Consensus 193 ~d 194 (207)
T 3ajx_A 193 AD 194 (207)
T ss_dssp SS
T ss_pred CC
Confidence 43
|
| >2ekc_A AQ_1548, tryptophan synthase alpha chain; structural genomics, lyase, NPPSFA, national project on PROT structural and functional analyses; 2.00A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=99.03 E-value=3.6e-09 Score=95.45 Aligned_cols=149 Identities=13% Similarity=0.094 Sum_probs=96.0
Q ss_pred HHHHHHHHHHhhc-CCcEEEEeecC----CCCHHHHHHHHhcCCcEEEEccCCCcH---HHHHHHHhCCCEEEEec---C
Q 020013 50 YLRDLIRKTRSLT-ERPFGVGVVLA----FPHNENIKAILSEKVAVLQVSWGEYSE---ELVLEAHSAGVKVVPQV---G 118 (332)
Q Consensus 50 ~~~~~i~~~r~~~-~~p~gvnl~~~----~~~~~~~~~~~~~~~~~I~~~~g~~~~---~~i~~~~~~g~~v~~~v---~ 118 (332)
.+.+.++++|+.. +.|+.+-...+ ...+..++.+.+.|++.+.++ +.++. ++++.+++.|+.++..+ +
T Consensus 80 ~~~~~v~~ir~~~~~~Pi~~m~y~n~v~~~g~~~f~~~~~~aG~dgvii~-dl~~ee~~~~~~~~~~~gl~~i~l~~p~t 158 (262)
T 2ekc_A 80 DVLELSETLRKEFPDIPFLLMTYYNPIFRIGLEKFCRLSREKGIDGFIVP-DLPPEEAEELKAVMKKYVLSFVPLGAPTS 158 (262)
T ss_dssp HHHHHHHHHHHHCTTSCEEEECCHHHHHHHCHHHHHHHHHHTTCCEEECT-TCCHHHHHHHHHHHHHTTCEECCEECTTC
T ss_pred HHHHHHHHHHhhcCCCCEEEEecCcHHHHhhHHHHHHHHHHcCCCEEEEC-CCCHHHHHHHHHHHHHcCCcEEEEeCCCC
Confidence 3446678888776 78887721111 112466788899999998886 43333 45566778887755432 3
Q ss_pred CHHHHHHHHHcCCCEEEEecCC-CCcccCCC--CchhhhHHHHHHHhCCCCCcEEeecCcCCHHHHHHHHHcCcceeeec
Q 020013 119 SFDEARKAVNAGVDAIIVQGRE-AGGHVIGQ--DGLISLLPMVVDLIGDRDIPIIAAGGIVDARGYVAALSLGAQGICLG 195 (332)
Q Consensus 119 s~~~a~~a~~~g~D~ivv~G~e-aGGh~~~~--~~~~~ll~~i~~~~~~~~iPviaaGGI~~~~~v~~al~~GA~gV~~G 195 (332)
+.+..+...+...+++.+.... ..|...+. .....++..+++.. ++||++.|||++++++.+ +..|||||++|
T Consensus 159 ~~~rl~~ia~~a~gfiy~vs~~g~TG~~~~~~~~~~~~~v~~vr~~~---~~pv~vG~GI~t~e~~~~-~~~gADgvIVG 234 (262)
T 2ekc_A 159 TRKRIKLICEAADEMTYFVSVTGTTGAREKLPYERIKKKVEEYRELC---DKPVVVGFGVSKKEHARE-IGSFADGVVVG 234 (262)
T ss_dssp CHHHHHHHHHHCSSCEEEESSCC---------CHHHHHHHHHHHHHC---CSCEEEESSCCSHHHHHH-HHTTSSEEEEC
T ss_pred CHHHHHHHHHhCCCCEEEEecCCccCCCCCcCcccHHHHHHHHHhhc---CCCEEEeCCCCCHHHHHH-HHcCCCEEEEC
Confidence 4555555555555555443321 11221111 12346788888765 799999999999999999 78899999999
Q ss_pred cccccCcc
Q 020013 196 TRFVASEE 203 (332)
Q Consensus 196 T~fl~t~E 203 (332)
|+|...-+
T Consensus 235 Sai~~~~~ 242 (262)
T 2ekc_A 235 SALVKLAG 242 (262)
T ss_dssp HHHHHHHH
T ss_pred HHHHhhhh
Confidence 99997743
|
| >1pii_A N-(5'phosphoribosyl)anthranilate isomerase; bifunctional(isomerase and synthase); 2.00A {Escherichia coli} SCOP: c.1.2.4 c.1.2.4 PDB: 1jcm_P* 2kzh_A | Back alignment and structure |
|---|
Probab=99.02 E-value=4.1e-09 Score=101.51 Aligned_cols=141 Identities=14% Similarity=0.188 Sum_probs=107.5
Q ss_pred HHHHHhhcCCcEEEEeecCCCCHHHHHHHHhcCCcEEEEccCCCc----HHHHHHHHhCCCEEEEecCCHHHHHHHHHcC
Q 020013 55 IRKTRSLTERPFGVGVVLAFPHNENIKAILSEKVAVLQVSWGEYS----EELVLEAHSAGVKVVPQVGSFDEARKAVNAG 130 (332)
Q Consensus 55 i~~~r~~~~~p~gvnl~~~~~~~~~~~~~~~~~~~~I~~~~g~~~----~~~i~~~~~~g~~v~~~v~s~~~a~~a~~~g 130 (332)
++.+|+.++.|+-..=|+.+ .-++..+...|+|+|.+.....+ .++++.+++.|+.++..|+|.+|+..+.+.|
T Consensus 100 L~~vr~~v~lPvLrKDFI~d--~~Qi~ea~~~GAD~ILLi~a~l~~~~l~~l~~~a~~lgm~~LvEvh~~eE~~~A~~lg 177 (452)
T 1pii_A 100 LPIVSQIAPQPILCKDFIID--PYQIYLARYYQADACLLMLSVLDDDQYRQLAAVAHSLEMGVLTEVSNEEEQERAIALG 177 (452)
T ss_dssp HHHHHHHCCSCEEEESCCCS--HHHHHHHHHTTCSEEEEETTTCCHHHHHHHHHHHHHTTCEEEEEECSHHHHHHHHHTT
T ss_pred HHHHHHhcCCCeEEEeccCC--HHHHHHHHHcCCCEEEEEcccCCHHHHHHHHHHHHHcCCeEEEEeCCHHHHHHHHHCC
Confidence 45566666778754434433 33566688899999988654433 2456677889999999999999999999999
Q ss_pred CCEEEEecCCCCcccCCCCchhhhHHHHHHHhCCCCCcEEeecCcCCHHHHHHHHHcCcceeeeccccccCcc
Q 020013 131 VDAIIVQGREAGGHVIGQDGLISLLPMVVDLIGDRDIPIIAAGGIVDARGYVAALSLGAQGICLGTRFVASEE 203 (332)
Q Consensus 131 ~D~ivv~G~eaGGh~~~~~~~~~ll~~i~~~~~~~~iPviaaGGI~~~~~v~~al~~GA~gV~~GT~fl~t~E 203 (332)
+|.|-+.+++..+. ...+....++.+.++. ++++|+.|||.+++++..+..+ |++|.+|+++|.+++
T Consensus 178 a~iIGinnr~L~t~----~~dl~~~~~L~~~ip~-~~~vIaEsGI~t~edv~~~~~~-a~avLVGealmr~~d 244 (452)
T 1pii_A 178 AKVVGINNRDLRDL----SIDLNRTRELAPKLGH-NVTVISESGINTYAQVRELSHF-ANGFLIGSALMAHDD 244 (452)
T ss_dssp CSEEEEESEETTTT----EECTHHHHHHHHHHCT-TSEEEEESCCCCHHHHHHHTTT-CSEEEECHHHHTCSC
T ss_pred CCEEEEeCCCCCCC----CCCHHHHHHHHHhCCC-CCeEEEECCCCCHHHHHHHHHh-CCEEEEcHHHcCCcC
Confidence 99999987754322 1235555555555543 6899999999999999999999 999999999998865
|
| >3tha_A Tryptophan synthase alpha chain; structural genomics, center for structural genomics of infec diseases, csgid, lyase; 2.37A {Campylobacter jejuni} | Back alignment and structure |
|---|
Probab=98.99 E-value=1e-09 Score=97.77 Aligned_cols=132 Identities=16% Similarity=0.151 Sum_probs=90.4
Q ss_pred CHHHHHHHHhcCCcEEEEccCCCc---HHHHHHHHhCCCEEEEec---CCHHHHHHHHHcCCCEEEEecCCCCcccCCCC
Q 020013 76 HNENIKAILSEKVAVLQVSWGEYS---EELVLEAHSAGVKVVPQV---GSFDEARKAVNAGVDAIIVQGREAGGHVIGQD 149 (332)
Q Consensus 76 ~~~~~~~~~~~~~~~I~~~~g~~~---~~~i~~~~~~g~~v~~~v---~s~~~a~~a~~~g~D~ivv~G~eaGGh~~~~~ 149 (332)
.+.+++.+.+.|+|.+.+. +.|+ .++.+.+++.|+..+..+ ++.+.++...+.+-++|-+... -|.++...
T Consensus 105 ~e~F~~~~~~aGvdG~Iip-DLP~eE~~~~~~~~~~~Gl~~I~lvaP~t~~eRi~~ia~~a~gFiY~Vs~--~GvTG~~~ 181 (252)
T 3tha_A 105 LEKFVKKAKSLGICALIVP-ELSFEESDDLIKECERYNIALITLVSVTTPKERVKKLVKHAKGFIYLLAS--IGITGTKS 181 (252)
T ss_dssp HHHHHHHHHHTTEEEEECT-TCCGGGCHHHHHHHHHTTCEECEEEETTSCHHHHHHHHTTCCSCEEEECC--SCSSSCSH
T ss_pred HHHHHHHHHHcCCCEEEeC-CCCHHHHHHHHHHHHHcCCeEEEEeCCCCcHHHHHHHHHhCCCeEEEEec--CCCCCccc
Confidence 3667889999999999887 3433 467777888998765433 3466777777776666554322 12221111
Q ss_pred ----chhhhHHHHHHHhCCCCCcEEeecCcCCHHHHHHHHHcCcceeeeccccccCccCCCCHHHHHHH
Q 020013 150 ----GLISLLPMVVDLIGDRDIPIIAAGGIVDARGYVAALSLGAQGICLGTRFVASEESYAHPEYKRKL 214 (332)
Q Consensus 150 ----~~~~ll~~i~~~~~~~~iPviaaGGI~~~~~v~~al~~GA~gV~~GT~fl~t~Es~~~~~~k~~~ 214 (332)
....++.++++.. ++||++.+||++++++.++.. +||||++||+|+..-|....+...+.+
T Consensus 182 ~~~~~~~~~v~~vr~~~---~~Pv~vGfGIst~e~a~~~~~-~ADGVIVGSAiVk~i~~~~~~~~~~~~ 246 (252)
T 3tha_A 182 VEEAILQDKVKEIRSFT---NLPIFVGFGIQNNQDVKRMRK-VADGVIVGTSIVKCFKQGNLDIIMKDI 246 (252)
T ss_dssp HHHHHHHHHHHHHHTTC---CSCEEEESSCCSHHHHHHHTT-TSSEEEECHHHHHHTTSSCHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHhc---CCcEEEEcCcCCHHHHHHHHh-cCCEEEECHHHHHHHHhcCHHHHHHHH
Confidence 1245666666654 799999999999999998766 699999999999877655444444443
|
| >1z41_A YQJM, probable NADH-dependent flavin oxidoreductase YQJ; FMN, beta-alpha-barrel; HET: FMN; 1.30A {Bacillus subtilis} SCOP: c.1.4.1 PDB: 1z42_A* 1z44_A* 1z48_A* | Back alignment and structure |
|---|
Probab=98.92 E-value=5.9e-08 Score=90.61 Aligned_cols=120 Identities=17% Similarity=0.104 Sum_probs=84.2
Q ss_pred HHHHhcCCcEEEEccCC---------C-------------------cHHHHHHHHhC-CCEEEEecC---------CHH-
Q 020013 81 KAILSEKVAVLQVSWGE---------Y-------------------SEELVLEAHSA-GVKVVPQVG---------SFD- 121 (332)
Q Consensus 81 ~~~~~~~~~~I~~~~g~---------~-------------------~~~~i~~~~~~-g~~v~~~v~---------s~~- 121 (332)
+.+.++|.|.|.+|.++ + ..++++.+++. +.+|...++ +.+
T Consensus 151 ~~a~~aGfDgVeih~~~gyLl~qFlsp~~n~R~d~yGGslenr~r~~~eiv~avr~~v~~pv~vris~~~~~~~g~~~~~ 230 (338)
T 1z41_A 151 ARAKEAGFDVIEIHAAHGYLIHEFLSPLSNHRTDEYGGSPENRYRFLREIIDEVKQVWDGPLFVRVSASDYTDKGLDIAD 230 (338)
T ss_dssp HHHHHTTCSEEEEEECTTSHHHHHHCTTTCCCCSTTSSSHHHHHHHHHHHHHHHHHHCCSCEEEEEECCCCSTTSCCHHH
T ss_pred HHHHHcCCCEEEeccccchHHHHccCCCcCCcCcccCcchhhhHHHHHHHHHHHHHHcCCcEEEEecCcccCCCCCCHHH
Confidence 44567899999998653 1 12455555543 566665542 233
Q ss_pred ---HHHHHHHcCCCEEEEecCCCCcc--cCCCCchhhhHHHHHHHhCCCCCcEEeecCcCCHHHHHHHHHcC-cceeeec
Q 020013 122 ---EARKAVNAGVDAIIVQGREAGGH--VIGQDGLISLLPMVVDLIGDRDIPIIAAGGIVDARGYVAALSLG-AQGICLG 195 (332)
Q Consensus 122 ---~a~~a~~~g~D~ivv~G~eaGGh--~~~~~~~~~ll~~i~~~~~~~~iPviaaGGI~~~~~v~~al~~G-A~gV~~G 195 (332)
-++.+.+.|+|+|.+.+...-.. ..++...+.++.++++.+ ++||++.|||.+++++.++++.| ||.|++|
T Consensus 231 ~~~~a~~l~~~Gvd~i~v~~~~~~~~~~~~~~~~~~~~~~~ir~~~---~iPVi~~Ggi~s~~~a~~~l~~G~aD~V~iG 307 (338)
T 1z41_A 231 HIGFAKWMKEQGVDLIDCSSGALVHADINVFPGYQVSFAEKIREQA---DMATGAVGMITDGSMAEEILQNGRADLIFIG 307 (338)
T ss_dssp HHHHHHHHHHTTCCEEEEECCCSSCCCCCCCTTTTHHHHHHHHHHH---CCEEEECSSCCSHHHHHHHHHTTSCSEEEEC
T ss_pred HHHHHHHHHHcCCCEEEEecCccccCCCCCCccchHHHHHHHHHHC---CCCEEEECCCCCHHHHHHHHHcCCceEEeec
Confidence 34566789999999965321111 111112366788888888 79999999999999999999999 9999999
Q ss_pred cccccCcc
Q 020013 196 TRFVASEE 203 (332)
Q Consensus 196 T~fl~t~E 203 (332)
+.|+..++
T Consensus 308 R~~i~nPd 315 (338)
T 1z41_A 308 RELLRDPF 315 (338)
T ss_dssp HHHHHCTT
T ss_pred HHHHhCch
Confidence 99998754
|
| >2yzr_A Pyridoxal biosynthesis lyase PDXS; redox protein, pyridoxal phosphate, structural genomi NPPSFA; 2.30A {Methanocaldococcus jannaschii} | Back alignment and structure |
|---|
Probab=98.90 E-value=8.1e-09 Score=94.45 Aligned_cols=188 Identities=20% Similarity=0.288 Sum_probs=124.6
Q ss_pred CCcHHHHHHHHhCCCceeecC-------------CCCCCHHHHHHHHHHHHhhcCCcEEEEeecCCCCHHHHHHHHhcCC
Q 020013 22 ISGPELVAAVANAGGLGLLRA-------------PDWEAPDYLRDLIRKTRSLTERPFGVGVVLAFPHNENIKAILSEKV 88 (332)
Q Consensus 22 ~s~~~la~avs~aGglG~i~~-------------~~~~~~e~~~~~i~~~r~~~~~p~gvnl~~~~~~~~~~~~~~~~~~ 88 (332)
+..++.|....++|..++... .++.+|+.+++ +++.++.|+-...+... .+..+++.+.|+
T Consensus 24 ~~~~e~A~~ae~aGA~aI~~l~~v~~d~~~~~G~arm~~p~~i~~----I~~av~iPV~~K~rig~--~~e~qilea~Ga 97 (330)
T 2yzr_A 24 VTNVEQAQIAEEAGAVAVMALERVPADIRAAGGVARMSDPALIEE----IMDAVSIPVMAKCRIGH--TTEALVLEAIGV 97 (330)
T ss_dssp ESSHHHHHHHHHHTCSEEEECSSCHHHHC--CCCCCCCCHHHHHH----HHHHCSSCEEEEEETTC--HHHHHHHHHTTC
T ss_pred CCHHHHHHHHHHcCCCEEEecCCccccccCCcchhhcCCHHHHHH----HHHhcCCCeEEEEeecc--hHHHHHHHHcCC
Confidence 567889988888887766332 13446776544 44556789887766532 344666677999
Q ss_pred cEEEEccCCCcHHHHHHH--HhCCCEEEEecCCHHHHHHHHHcCCCEEEEecCCCC-c-------c--------------
Q 020013 89 AVLQVSWGEYSEELVLEA--HSAGVKVVPQVGSFDEARKAVNAGVDAIIVQGREAG-G-------H-------------- 144 (332)
Q Consensus 89 ~~I~~~~g~~~~~~i~~~--~~~g~~v~~~v~s~~~a~~a~~~g~D~ivv~G~eaG-G-------h-------------- 144 (332)
|+|..+.-..|.+....+ ++.++++++.+.+..|+.+....|+|.|-..|- +| | |
T Consensus 98 D~Id~s~~l~p~d~~~~i~k~~~~~~~~~~a~~lgea~r~~~~Ga~~i~t~ge-~g~~~~ve~v~H~r~~~~~~~~~s~~ 176 (330)
T 2yzr_A 98 DMIDESEVLTQADPFFHIYKKKFNVPFVCGARNLGEAVRRIWEGAAMIRTKGE-AGTGNIVEAVRHMRLMNEAIAQLQRM 176 (330)
T ss_dssp SEEEEETTSCCSCSSCCCCGGGCSSCEEEECSSHHHHHHHHHHTCSEEEECCC-TTSCCTHHHHHHHHHHHHHHHHHTTS
T ss_pred CEEehhccCCHHHHHHHhhhhhcccchhhccccHHHHHHHHhcCcceeeccCC-CCcccchhHHHHHHHHHHHHHHhccC
Confidence 999653111121111111 134678899999999998888999999999871 11 0 1
Q ss_pred --------------------------------------cCCC-------CchhhhHHHHHHHhCCCCCcE--EeecCcCC
Q 020013 145 --------------------------------------VIGQ-------DGLISLLPMVVDLIGDRDIPI--IAAGGIVD 177 (332)
Q Consensus 145 --------------------------------------~~~~-------~~~~~ll~~i~~~~~~~~iPv--iaaGGI~~ 177 (332)
.+.+ ..++.+++++.+.. ++|| |+.|||.+
T Consensus 177 ~~~El~~~A~~~gadyv~~~~~vt~~~G~~~r~Lg~G~Vf~T~TK~~~~~~~lell~~i~~~~---~IPVV~VAeGGI~T 253 (330)
T 2yzr_A 177 TDEEVYGVAKFYANRYAELAKTVREGMGLPATVLENEPIYEGFTLAEIIDGLYEVLLEVKKLG---RLPVVNFAAGGVAT 253 (330)
T ss_dssp CHHHHHHHHHHHHGGGGHHHHHHHHHTTSCSCCCTTSEEETTEEHHHHHHHHHHHHHHHHHHT---SCSSEEEECSCCCS
T ss_pred CHHHHHHHHHHcCCCEeecccchhhhccccccccccccccCCCcccCCCcchHHHHHHHHHhC---CCCeEEEEECCCCC
Confidence 0000 01237777777765 6898 69999999
Q ss_pred HHHHHHHHHcCcceeeeccccccCccC-CCCHHHHHHHhcCCC
Q 020013 178 ARGYVAALSLGAQGICLGTRFVASEES-YAHPEYKRKLVEMDK 219 (332)
Q Consensus 178 ~~~v~~al~~GA~gV~~GT~fl~t~Es-~~~~~~k~~~~~~~~ 219 (332)
++|+..++.+|||||.+||+++.+... .....+++++...++
T Consensus 254 peda~~~l~~GaDgV~VGsaI~~a~dP~~aar~l~~ai~~~~~ 296 (330)
T 2yzr_A 254 PADAALMMQLGSDGVFVGSGIFKSENPLERARAIVEATYNYDK 296 (330)
T ss_dssp HHHHHHHHHTTCSCEEESHHHHTSSCHHHHHHHHHHHHHTTTC
T ss_pred HHHHHHHHHcCcCEEeeHHHHhcCCCHHHHHHHHHHHHHhcCC
Confidence 999999999999999999999976432 123455555544443
|
| >1jvn_A Glutamine, bifunctional histidine biosynthesis protein hishf; substrate channeling, amidotransferase, TIM-barrel AS A SUBS tunnel; HET: 143; 2.10A {Saccharomyces cerevisiae} SCOP: c.1.2.1 c.23.16.1 PDB: 1ox4_B* 1ox5_A* 1ox6_A 1ox4_A | Back alignment and structure |
|---|
Probab=98.89 E-value=1e-08 Score=101.99 Aligned_cols=183 Identities=15% Similarity=0.149 Sum_probs=119.8
Q ss_pred HHHHHHHhCCCceeecC--CCCCC--H--HHHHHHHHHHHhhcCCcEEEEeecCCC---------CHHHHHHHHhcCCcE
Q 020013 26 ELVAAVANAGGLGLLRA--PDWEA--P--DYLRDLIRKTRSLTERPFGVGVVLAFP---------HNENIKAILSEKVAV 90 (332)
Q Consensus 26 ~la~avs~aGglG~i~~--~~~~~--~--e~~~~~i~~~r~~~~~p~gvnl~~~~~---------~~~~~~~~~~~~~~~ 90 (332)
++|.+..++|.-++... .+..+ + ....+.++++++....|+-++=-+... ..+.++.+++.|++.
T Consensus 284 ~~A~~~~~~Ga~~l~~~dl~~~~~~~~~~~~~~~~i~~i~~~~~ipi~vgGGIr~~~d~~~~~~~~~~~a~~~l~aGad~ 363 (555)
T 1jvn_A 284 QLAQKYYQQGADEVTFLNITSFRDCPLKDTPMLEVLKQAAKTVFVPLTVGGGIKDIVDVDGTKIPALEVASLYFRSGADK 363 (555)
T ss_dssp HHHHHHHHTTCSEEEEEEEC---CCCGGGCHHHHHHHHHTTTCCSCEEEESSCSCEECTTCCEECHHHHHHHHHHHTCSE
T ss_pred HHHHHHHHcCCCEEEEEeCCccccccCCCchHHHHHHHHHhhCCCcEEEeCccccchhcccccchHHHHHHHHHHcCCCE
Confidence 57777777775444221 01111 1 123456777776667777654222221 125678888999999
Q ss_pred EEEccCCCc--------------HHHHHHHHh-CC---CEEEEec-----------------------------------
Q 020013 91 LQVSWGEYS--------------EELVLEAHS-AG---VKVVPQV----------------------------------- 117 (332)
Q Consensus 91 I~~~~g~~~--------------~~~i~~~~~-~g---~~v~~~v----------------------------------- 117 (332)
|.++..... +++++++.+ .| +.+...+
T Consensus 364 V~igt~~~~~~~~~~~~~~~~~~~~~i~~~~~~~g~~~ivv~iD~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~v~~ 443 (555)
T 1jvn_A 364 VSIGTDAVYAAEKYYELGNRGDGTSPIETISKAYGAQAVVISVDPKRVYVNSQADTKNKVFETEYPGPNGEKYCWYQCTI 443 (555)
T ss_dssp EEECHHHHHHHHHHHHTTSCCCSCSHHHHHHHHHCGGGEEEEECEEEEEESSGGGCSSCCEECSSCCTTCCCEEEEEEEE
T ss_pred EEECCHHhhCchhhccccccccCHHHHHHHHHHhCCCcEEEEEEccccccccccccccccccccccCCCCCcceeEEEEE
Confidence 988633211 245555433 23 2222221
Q ss_pred ---------CCHHHHHHHHHcCCCEEEEecCCCCcccCCCCchhhhHHHHHHHhCCCCCcEEeecCcCCHHHHHHHHH-c
Q 020013 118 ---------GSFDEARKAVNAGVDAIIVQGREAGGHVIGQDGLISLLPMVVDLIGDRDIPIIAAGGIVDARGYVAALS-L 187 (332)
Q Consensus 118 ---------~s~~~a~~a~~~g~D~ivv~G~eaGGh~~~~~~~~~ll~~i~~~~~~~~iPviaaGGI~~~~~v~~al~-~ 187 (332)
...+.++.+++.|+|.|++.+.+..|+..+ ..+.+++++.+.+ ++|||++|||++.+++.+++. .
T Consensus 444 ~Gw~~~~~~~~~e~a~~~~~~Ga~~il~t~~~~dG~~~G--~d~~li~~l~~~~---~iPVIasGGi~s~~d~~~~~~~~ 518 (555)
T 1jvn_A 444 KGGRESRDLGVWELTRACEALGAGEILLNCIDKDGSNSG--YDLELIEHVKDAV---KIPVIASSGAGVPEHFEEAFLKT 518 (555)
T ss_dssp TTTTEEEEEEHHHHHHHHHHTTCCEEEECCGGGTTTCSC--CCHHHHHHHHHHC---SSCEEECSCCCSHHHHHHHHHHS
T ss_pred ecCccCCCCCHHHHHHHHHHcCCCEEEEeCCCCCCCCCC--CCHHHHHHHHHhC---CccEEEECCCCCHHHHHHHHHhc
Confidence 135788999999999999998887777534 3589999999887 799999999999999999998 8
Q ss_pred CcceeeeccccccCccCCCCHHHHHHHh
Q 020013 188 GAQGICLGTRFVASEESYAHPEYKRKLV 215 (332)
Q Consensus 188 GA~gV~~GT~fl~t~Es~~~~~~k~~~~ 215 (332)
||+||++|++|...+- .-...|+.+.
T Consensus 519 G~~gvivg~a~~~~~~--~~~e~~~~l~ 544 (555)
T 1jvn_A 519 RADACLGAGMFHRGEF--TVNDVKEYLL 544 (555)
T ss_dssp CCSEEEESHHHHTTSC--CHHHHHHHHH
T ss_pred CChHHHHHHHHHcCCC--CHHHHHHHHH
Confidence 9999999999976532 2234455443
|
| >3tjx_A Dihydroorotate dehydrogenase; PYRD, dhodh, lmdhodh, oxidored mutation H174A; HET: FMN; 1.64A {Leishmania major} PDB: 3gz3_A* 3gye_A* 3tro_A* | Back alignment and structure |
|---|
Probab=98.88 E-value=1.3e-08 Score=95.65 Aligned_cols=191 Identities=14% Similarity=0.123 Sum_probs=106.5
Q ss_pred hhcC--CccceecCCCCCCCCcHHHHHHHHhCCCceeecCC---------C-----------------C--CCHHHHHHH
Q 020013 5 GMLG--FEYGIVQAPLGPDISGPELVAAVANAGGLGLLRAP---------D-----------------W--EAPDYLRDL 54 (332)
Q Consensus 5 ~~l~--~~~Pii~apM~~g~s~~~la~avs~aGglG~i~~~---------~-----------------~--~~~e~~~~~ 54 (332)
+++| ++.||+.|.-. .-.+.+.+.+....| +|++..+ + + ...|.+.+.
T Consensus 40 ~~~Gl~f~NPvglAaG~-~~~~~e~~~~l~~~G-~G~v~~~tvt~~pq~GNp~PR~~~l~~~~iN~~G~~n~G~~~~~~~ 117 (354)
T 3tjx_A 40 NLLNNTFANPFMNAAGV-MCTTTEELVAMTESA-SGSLVSKSCTPALREGNPTPRYQALPLGSINSMGLPNNGFDFYLAY 117 (354)
T ss_dssp EETTEEESSSEEECTTS-SCSSHHHHHHHHHSS-CSCEEEEEECSSCBCCSCSCCEEEETTEEEECCCCCBCCHHHHHHH
T ss_pred EECCEEcCCCcEEccCC-CCCCHHHHHHHHHcC-CCEEEeCCcCcccccCCCCCeEEEcccccccccccCCHHHHHHHHH
Confidence 4566 66799987531 135788888888775 4544211 0 0 112333333
Q ss_pred HHHHHhhcCCcEEEEeecCCCC--HHH---HHHHHhcCCcEEEEccCCCc-----------H---HHHHHHHh-CCCEEE
Q 020013 55 IRKTRSLTERPFGVGVVLAFPH--NEN---IKAILSEKVAVLQVSWGEYS-----------E---ELVLEAHS-AGVKVV 114 (332)
Q Consensus 55 i~~~r~~~~~p~gvnl~~~~~~--~~~---~~~~~~~~~~~I~~~~g~~~-----------~---~~i~~~~~-~g~~v~ 114 (332)
+...+...+.|+.+|+....+. .+. +......++|+|.++.++|. . ++++.+++ ...++.
T Consensus 118 ~~~~~~~~~~pvivsi~g~~~~~~~~~~~~~~~~~~~~ad~ielNiScPn~~g~~~l~~~~~~~~~i~~~v~~~~~~pv~ 197 (354)
T 3tjx_A 118 AAEQHDYGKKPLFLSMSGLSMRENVEMCKRLAAVATEKGVILELNLSCPNVPGKPQVAYDFDAMRQCLTAVSEVYPHSFG 197 (354)
T ss_dssp HHHTCCTTTCCEEEEECCSSHHHHHHHHHHHHHHHHHHCCEEEEECC---------CTTSHHHHHHHHHHHHHHCCSCEE
T ss_pred HHHhhccCCceEEEEEecCChHHHHHHHHHHHHhhhcCCCEEEeeeCCCCCcchhhhccCHHHHHHHHHHHHHHhhcccc
Confidence 3333344568999998875531 112 22233347899998876542 1 22233333 345565
Q ss_pred EecC---C-HH---HHHHHHHc-CCCEEEEecC--------------------CCCcccCCCC---chhhhHHHHHHHhC
Q 020013 115 PQVG---S-FD---EARKAVNA-GVDAIIVQGR--------------------EAGGHVIGQD---GLISLLPMVVDLIG 163 (332)
Q Consensus 115 ~~v~---s-~~---~a~~a~~~-g~D~ivv~G~--------------------eaGGh~~~~~---~~~~ll~~i~~~~~ 163 (332)
.+.. + .. .+....+. +++.+...+. +.||.. ++. .....+.++.+...
T Consensus 198 vK~~p~~~~~~~~~~~~~~~~~~~~~~i~~i~t~~~~~~id~~~~~~~~~~~~~~GGlS-G~~~~~~a~~~v~~~~~~~~ 276 (354)
T 3tjx_A 198 VKMPPYFDFAAFDAAAEILNEFPKVQFITCINSIGNGLVIDAETESVVIKPKQGFGGLG-GRYVLPTALANINAFYRRCP 276 (354)
T ss_dssp EEECCCCSHHHHHHHHHHHHTCTTEEEEEECCCEEEEECEETTTTEESCSGGGGEEEEE-GGGGHHHHHHHHHHHHHHCT
T ss_pred cccCCCCCchhHHHHHHHHHhhcccchhheecccccccccccccccccccCcccccccC-chhhHHHHHHHHHHHHHhcC
Confidence 5443 1 11 11222233 4444443211 123333 221 12334555555543
Q ss_pred CCCCcEEeecCcCCHHHHHHHHHcCcceeeecccccc
Q 020013 164 DRDIPIIAAGGIVDARGYVAALSLGAQGICLGTRFVA 200 (332)
Q Consensus 164 ~~~iPviaaGGI~~~~~v~~al~~GA~gV~~GT~fl~ 200 (332)
++|||+.|||.+++|+.+++.+|||.||+||+|+.
T Consensus 277 --~~pIIg~GGI~s~~Da~e~i~aGAs~Vqv~Ta~~y 311 (354)
T 3tjx_A 277 --GKLIFGCGGVYTGEDAFLHVLAGASMVQVGTALQE 311 (354)
T ss_dssp --TSEEEEESSCCSHHHHHHHHHHTEEEEEECHHHHH
T ss_pred --CCcEEEeCCcCCHHHHHHHHHcCCCEEEEChhhhh
Confidence 68999999999999999999999999999999874
|
| >2h6r_A Triosephosphate isomerase; beta-alpha barrel; 2.30A {Methanocaldococcus jannaschii} | Back alignment and structure |
|---|
Probab=98.78 E-value=4.2e-08 Score=86.03 Aligned_cols=146 Identities=18% Similarity=0.250 Sum_probs=94.9
Q ss_pred HHHHhhcCCcEEE-EeecCCC----CHHHHHHHHhcCCcEEEEccC--CCc----HHHHHHHHhCCCEEEEecCCHHHHH
Q 020013 56 RKTRSLTERPFGV-GVVLAFP----HNENIKAILSEKVAVLQVSWG--EYS----EELVLEAHSAGVKVVPQVGSFDEAR 124 (332)
Q Consensus 56 ~~~r~~~~~p~gv-nl~~~~~----~~~~~~~~~~~~~~~I~~~~g--~~~----~~~i~~~~~~g~~v~~~v~s~~~a~ 124 (332)
..+++.++.|++. |+-..++ -+-.++.+.+.|+|.|.+... ..+ .+.++.+++.|+.++..+++.++..
T Consensus 46 ~~v~~~~~~~v~aqd~~~~~~ga~tGei~~~~~~~~Gad~Vll~~ser~l~~~e~~~~~~~a~~~Gl~~iv~v~~~~e~~ 125 (219)
T 2h6r_A 46 RMIVENVNIPVYAQHIDNINPGSHTGHILAEAIKDCGCKGTLINHSEKRMLLADIEAVINKCKNLGLETIVCTNNINTSK 125 (219)
T ss_dssp HHHHHHCCSCBEESCCCSCCSBSCTTCCCHHHHHHHTCCEEEESBTTBCCBHHHHHHHHHHHHHHTCEEEEEESSSHHHH
T ss_pred HHHHHHcCCcEEEEECChhhcCCccCchHHHHHHHcCCCEEEECCccccCCHHHHHHHHHHHHHCCCeEEEEeCCchHHH
Confidence 3344444677766 5332221 012378889999999999533 122 2445556778999999999888888
Q ss_pred HHHHcCCCEEEEecCCC-C-c---ccCCCCchhhhHHHHHHHhCCCCCcEEeecCcCCHHHHHHHHHcCcceeeeccccc
Q 020013 125 KAVNAGVDAIIVQGREA-G-G---HVIGQDGLISLLPMVVDLIGDRDIPIIAAGGIVDARGYVAALSLGAQGICLGTRFV 199 (332)
Q Consensus 125 ~a~~~g~D~ivv~G~ea-G-G---h~~~~~~~~~ll~~i~~~~~~~~iPviaaGGI~~~~~v~~al~~GA~gV~~GT~fl 199 (332)
.+.+.+.++|-+....+ | | ++..+...-..+..+++ ... ++||++.|||.+++++..+...|+|||.+||+++
T Consensus 126 ~~~~~~~~~i~~~~~~~iGtG~~~~t~~~~~~~~~~~~ir~-~~~-~~~ii~ggGI~~~~~~~~~~~~gaDgvlVGsAi~ 203 (219)
T 2h6r_A 126 AVAALSPDCIAVEPPELIGTGIPVSKANPEVVEGTVRAVKE-INK-DVKVLCGAGISKGEDVKAALDLGAEGVLLASGVV 203 (219)
T ss_dssp HHTTTCCSEEEECCCC--------------CSHHHHHHHHH-HCT-TCEEEECSSCCSHHHHHHHHTTTCCCEEESHHHH
T ss_pred HHHhCCCCEEEEEeccccccCCCCccCCHHHHHHHHHHHHh-ccC-CCeEEEEeCcCcHHHHHHHhhCCCCEEEEcHHHh
Confidence 88888999887766554 2 2 11111101122222222 221 6899999999889999999999999999999999
Q ss_pred cCcc
Q 020013 200 ASEE 203 (332)
Q Consensus 200 ~t~E 203 (332)
..++
T Consensus 204 ~~~d 207 (219)
T 2h6r_A 204 KAKN 207 (219)
T ss_dssp TCSS
T ss_pred Cccc
Confidence 7644
|
| >2gou_A Oxidoreductase, FMN-binding; OLD yeallow enzyme, flavoenzyme; HET: BOG FMN PE4; 1.40A {Shewanella oneidensis} PDB: 2gq8_A* 2gq9_A* 2gqa_A* | Back alignment and structure |
|---|
Probab=98.70 E-value=1.6e-06 Score=81.66 Aligned_cols=115 Identities=17% Similarity=0.157 Sum_probs=80.8
Q ss_pred HHHhcCCcEEEEccCC---------C-------------------cHHHHHHHHhC-CC-EEEEecC------------C
Q 020013 82 AILSEKVAVLQVSWGE---------Y-------------------SEELVLEAHSA-GV-KVVPQVG------------S 119 (332)
Q Consensus 82 ~~~~~~~~~I~~~~g~---------~-------------------~~~~i~~~~~~-g~-~v~~~v~------------s 119 (332)
.+.+.|.|.|.+|.++ + ..++++.+++. |. +|...++ +
T Consensus 169 ~a~~aGfDgVeih~a~gYLl~qFlsp~~N~R~D~yGGslenr~r~~~eiv~avr~~vg~~pv~vris~~~~~~~~~~~~~ 248 (365)
T 2gou_A 169 NAMEAGFDGIELHAANGYLINQFIDSEANNRSDEYGGSLENRLRFLDEVVAALVDAIGAERVGVRLAPLTTLNGTVDADP 248 (365)
T ss_dssp HHHHTTCSEEEEECCTTSHHHHHHSGGGCCCCSTTSSSHHHHTHHHHHHHHHHHHHHCGGGEEEEECSSCCTTSCCCSSH
T ss_pred HHHHcCCCEEEEecccchhHhhccCCCccCcCcccCcchhhhHHHHHHHHHHHHHHcCCCcEEEEEccccccCCCCCCCC
Confidence 3567899999998643 1 12445666542 21 5655332 2
Q ss_pred HHH----HHHHHHcCCCEEEEecCCCCcccCCCCchhhhHHHHHHHhCCCCCcEEeecCcCCHHHHHHHHHcC-cceeee
Q 020013 120 FDE----ARKAVNAGVDAIIVQGREAGGHVIGQDGLISLLPMVVDLIGDRDIPIIAAGGIVDARGYVAALSLG-AQGICL 194 (332)
Q Consensus 120 ~~~----a~~a~~~g~D~ivv~G~eaGGh~~~~~~~~~ll~~i~~~~~~~~iPviaaGGI~~~~~v~~al~~G-A~gV~~ 194 (332)
.++ ++.+.+.|+|+|.+.+....+. +...+.++..+++.+ ++|||+.||| +++++.++++.| ||+|++
T Consensus 249 ~~~~~~~a~~l~~~G~d~i~v~~~~~~~~---~~~~~~~~~~i~~~~---~iPvi~~Ggi-~~~~a~~~l~~g~aD~V~i 321 (365)
T 2gou_A 249 ILTYTAAAALLNKHRIVYLHIAEVDWDDA---PDTPVSFKRALREAY---QGVLIYAGRY-NAEKAEQAINDGLADMIGF 321 (365)
T ss_dssp HHHHHHHHHHHHHTTCSEEEEECCBTTBC---CCCCHHHHHHHHHHC---CSEEEEESSC-CHHHHHHHHHTTSCSEEEC
T ss_pred HHHHHHHHHHHHHcCCCEEEEeCCCcCCC---CCccHHHHHHHHHHC---CCcEEEeCCC-CHHHHHHHHHCCCcceehh
Confidence 233 5667789999999976421111 112256778888877 7999999999 999999999998 999999
Q ss_pred ccccccCcc
Q 020013 195 GTRFVASEE 203 (332)
Q Consensus 195 GT~fl~t~E 203 (332)
|+.|+..++
T Consensus 322 gR~~i~~P~ 330 (365)
T 2gou_A 322 GRPFIANPD 330 (365)
T ss_dssp CHHHHHCTT
T ss_pred cHHHHhCch
Confidence 999998643
|
| >1viz_A PCRB protein homolog; structural genomics, unknown function; 1.85A {Bacillus subtilis} SCOP: c.1.4.1 | Back alignment and structure |
|---|
Probab=98.68 E-value=5.5e-07 Score=79.68 Aligned_cols=179 Identities=15% Similarity=0.118 Sum_probs=116.0
Q ss_pred CcchhhcCCccceecCCCCCCCCcHHHHHHHHhCCC----ceeecCCCCCCHHHHHHHHHHHHhhcCCcEEEEeecCCCC
Q 020013 1 MGWRGMLGFEYGIVQAPLGPDISGPELVAAVANAGG----LGLLRAPDWEAPDYLRDLIRKTRSLTERPFGVGVVLAFPH 76 (332)
Q Consensus 1 ~~~~~~l~~~~Pii~apM~~g~s~~~la~avs~aGg----lG~i~~~~~~~~e~~~~~i~~~r~~~~~p~gvnl~~~~~~ 76 (332)
|++.++-.-+|=...+|=- -.+.+.+.++.++|. +|. + .-.+.+.+.+.++++|+ ++.|+.+ +....
T Consensus 1 ~~~~~~~~~~~i~~gDP~~--~~t~~~~~~l~~~GaD~ielG~--S-~Gvt~~~~~~~v~~ir~-~~~Pivl--m~y~~- 71 (240)
T 1viz_A 1 MSLYDVTEWKHVFKLDPNK--DLPDEQLEILCESGTDAVIIGG--S-DGVTEDNVLRMMSKVRR-FLVPCVL--EVSAI- 71 (240)
T ss_dssp -CCSCGGGCCEEEEECTTS--CCCHHHHHHHHTSCCSEEEECC-------CHHHHHHHHHHHTT-SSSCEEE--ECSCG-
T ss_pred CCccccCcceEEEeeCCCc--cccHHHHHHHHHcCCCEEEECC--C-CCCCHHHHHHHHHHhhC-cCCCEEE--ecCcc-
Confidence 5554444445656666643 467788888888874 332 2 23578888899999998 7788765 22110
Q ss_pred HHHHHHHHhcCCcEEEEcc--CCCcHHH-----HHHHHhCC-----CEEEE----ec---------------CCHHHHHH
Q 020013 77 NENIKAILSEKVAVLQVSW--GEYSEEL-----VLEAHSAG-----VKVVP----QV---------------GSFDEARK 125 (332)
Q Consensus 77 ~~~~~~~~~~~~~~I~~~~--g~~~~~~-----i~~~~~~g-----~~v~~----~v---------------~s~~~a~~ 125 (332)
+.+ +.++|.+.+.- .....++ .+.+++.| +.++. .+ .+++.++.
T Consensus 72 -n~i----~~G~dg~iiPdLp~ee~~~~~~g~~~~a~~~~g~~~~~l~~i~~gy~l~~P~~~~~rl~~~d~~~~~~~~~~ 146 (240)
T 1viz_A 72 -EAI----VPGFDLYFIPSVLNSKNADWIVGMHQKAMKEYGELMSMEEIVAEGYCIANPDCKAAALTEADADLNMDDIVA 146 (240)
T ss_dssp -GGC----CSCCSEEEEEEETTBSSGGGTTHHHHHHHHHCHHHHHHSCEEEEEEEECCTTSHHHHHTTBCCCCCHHHHHH
T ss_pred -ccc----cCCCCEEEEcccCcccChhhhcchhHHHHHHcCCCCcceeeeecccEEECCCCceEEeeccCCCCCHHHHHH
Confidence 111 56888887641 1112234 46677777 65554 21 33566666
Q ss_pred HHHcCC----CEEEEecCCCCcccCCCCchhhhHHHHHHHhCCCCCcEEeecCcCCHHHHHHHHHcCcceeeeccccccC
Q 020013 126 AVNAGV----DAIIVQGREAGGHVIGQDGLISLLPMVVDLIGDRDIPIIAAGGIVDARGYVAALSLGAQGICLGTRFVAS 201 (332)
Q Consensus 126 a~~~g~----D~ivv~G~eaGGh~~~~~~~~~ll~~i~~~~~~~~iPviaaGGI~~~~~v~~al~~GA~gV~~GT~fl~t 201 (332)
..+.|. .+|-+.+ . |. .....++.++++... ++|+++.|||++++++.+++. |||+|++||++...
T Consensus 147 ~a~~g~~~~~~~VYl~s--~-G~----~~~~~~i~~i~~~~~--~~Pv~vGgGI~t~e~a~~~~~-gAd~VIVGSa~v~~ 216 (240)
T 1viz_A 147 YARVSELLQLPIFYLEY--S-GV----LGDIEAVKKTKAVLE--TSTLFYGGGIKDAETAKQYAE-HADVIVVGNAVYED 216 (240)
T ss_dssp HHHHHHHTTCSEEEEEC--T-TS----CCCHHHHHHHHHTCS--SSEEEEESSCCSHHHHHHHHT-TCSEEEECTHHHHC
T ss_pred HHHhCcccCCCEEEEeC--C-Cc----cChHHHHHHHHHhcC--CCCEEEEeccCCHHHHHHHHh-CCCEEEEChHHHhC
Confidence 665553 6776665 2 32 234778888887642 689999999999999999998 99999999999976
Q ss_pred cc
Q 020013 202 EE 203 (332)
Q Consensus 202 ~E 203 (332)
.|
T Consensus 217 ~~ 218 (240)
T 1viz_A 217 FD 218 (240)
T ss_dssp HH
T ss_pred HH
Confidence 44
|
| >2r14_A Morphinone reductase; H-tunnelling, flavoprotein, NADH, hydride transfer, oxidoreductase; HET: FMN TXD; 1.40A {Pseudomonas putida} PDB: 3gx9_A* 1gwj_A* | Back alignment and structure |
|---|
Probab=98.67 E-value=1.7e-06 Score=81.77 Aligned_cols=116 Identities=16% Similarity=0.091 Sum_probs=80.3
Q ss_pred HHHhcCCcEEEEccCC---------C-------------------cHHHHHHHHhC-CC-EEEEecC------------C
Q 020013 82 AILSEKVAVLQVSWGE---------Y-------------------SEELVLEAHSA-GV-KVVPQVG------------S 119 (332)
Q Consensus 82 ~~~~~~~~~I~~~~g~---------~-------------------~~~~i~~~~~~-g~-~v~~~v~------------s 119 (332)
.+.++|.|.|.+|.++ + ..++++.+++. |. +|...++ +
T Consensus 174 ~a~~aGfDgVEIh~a~GYLl~QFlsp~~N~R~D~yGGslenR~r~~~eiv~aVr~avg~~~v~vrls~~~~~~~~~~~~~ 253 (377)
T 2r14_A 174 RAKRAGFDMVEVHAANACLPNQFLATGTNRRTDQYGGSIENRARFPLEVVDAVAEVFGPERVGIRLTPFLELFGLTDDEP 253 (377)
T ss_dssp HHHHHTCSEEEEEECTTCHHHHHHSTTTCCCCSTTSSSHHHHHHHHHHHHHHHHHHHCGGGEEEEECTTCCCTTCCCSCH
T ss_pred HHHHcCCCEEEEcCcccchHHhccCCccccCCCccCcchhhchHHHHHHHHHHHHHcCCCcEEEEeccccccCCCCCCCC
Confidence 4467899999998653 1 13455666553 32 5665542 1
Q ss_pred HHH----HHHHHHcCCCEEEEecCCCCcccCCCCchhhhHHHHHHHhCCCCCcEEeecCcCCHHHHHHHHHcC-cceeee
Q 020013 120 FDE----ARKAVNAGVDAIIVQGREAGGHVIGQDGLISLLPMVVDLIGDRDIPIIAAGGIVDARGYVAALSLG-AQGICL 194 (332)
Q Consensus 120 ~~~----a~~a~~~g~D~ivv~G~eaGGh~~~~~~~~~ll~~i~~~~~~~~iPviaaGGI~~~~~v~~al~~G-A~gV~~ 194 (332)
.++ ++.+.+.|+|+|-+.+....+.. ....+.++.++++.+ ++|||+.||| +++++.++++.| ||+|.+
T Consensus 254 ~~~~~~la~~le~~Gvd~i~v~~~~~~~~~--~~~~~~~~~~ik~~~---~iPvi~~Ggi-~~~~a~~~l~~g~aD~V~i 327 (377)
T 2r14_A 254 EAMAFYLAGELDRRGLAYLHFNEPDWIGGD--ITYPEGFREQMRQRF---KGGLIYCGNY-DAGRAQARLDDNTADAVAF 327 (377)
T ss_dssp HHHHHHHHHHHHHTTCSEEEEECCC--------CCCTTHHHHHHHHC---CSEEEEESSC-CHHHHHHHHHTTSCSEEEE
T ss_pred HHHHHHHHHHHHHcCCCEEEEeCCcccCCC--CcchHHHHHHHHHHC---CCCEEEECCC-CHHHHHHHHHCCCceEEee
Confidence 233 56677899999999653211110 111366778888887 7999999999 799999999998 999999
Q ss_pred ccccccCcc
Q 020013 195 GTRFVASEE 203 (332)
Q Consensus 195 GT~fl~t~E 203 (332)
|+.|+..++
T Consensus 328 gR~~l~~P~ 336 (377)
T 2r14_A 328 GRPFIANPD 336 (377)
T ss_dssp SHHHHHCTT
T ss_pred cHHHHhCch
Confidence 999998754
|
| >1vyr_A Pentaerythritol tetranitrate reductase; oxidoreductase, flavoenzyme, explosive degradation, steroid binding; HET: FMN TNF; 0.9A {Enterobacter cloacae} SCOP: c.1.4.1 PDB: 1gvq_A* 1gvr_A* 1gvs_A* 1h50_A* 1h51_A* 1h60_A* 1h61_A* 1h62_A* 1h63_A* 1gvo_A* 2aba_A* 3f03_K* 3kft_A* 3p7y_A* 3p80_A* 3p81_A* 3p62_A* 3p8i_A* 2abb_A* 3p67_A* ... | Back alignment and structure |
|---|
Probab=98.63 E-value=2.9e-06 Score=79.92 Aligned_cols=74 Identities=16% Similarity=0.268 Sum_probs=58.1
Q ss_pred HHHHHHcCCCEEEEecCCCCcccCCCCchhhhHHHHHHHhCCCCCcEEeecCcCCHHHHHHHHHcC-cceeeeccccccC
Q 020013 123 ARKAVNAGVDAIIVQGREAGGHVIGQDGLISLLPMVVDLIGDRDIPIIAAGGIVDARGYVAALSLG-AQGICLGTRFVAS 201 (332)
Q Consensus 123 a~~a~~~g~D~ivv~G~eaGGh~~~~~~~~~ll~~i~~~~~~~~iPviaaGGI~~~~~v~~al~~G-A~gV~~GT~fl~t 201 (332)
++.+.+.|+|+|-+.+...-+ .....+.++.++++.+ ++||++.||| +++++.++++.| ||+|.+|+.++..
T Consensus 257 a~~l~~~G~d~i~v~~~~~~~---~~~~~~~~~~~v~~~~---~iPvi~~Ggi-t~~~a~~~l~~g~aD~V~~gR~~l~~ 329 (364)
T 1vyr_A 257 IEELAKRGIAYLHMSETDLAG---GKPYSEAFRQKVRERF---HGVIIGAGAY-TAEKAEDLIGKGLIDAVAFGRDYIAN 329 (364)
T ss_dssp HHHHHHTTCSEEEEECCBTTB---CCCCCHHHHHHHHHHC---CSEEEEESSC-CHHHHHHHHHTTSCSEEEESHHHHHC
T ss_pred HHHHHHhCCCEEEEecCcccC---CCcccHHHHHHHHHHC---CCCEEEECCc-CHHHHHHHHHCCCccEEEECHHHHhC
Confidence 566788999999997532111 1112356777888877 7999999999 999999999998 9999999999986
Q ss_pred cc
Q 020013 202 EE 203 (332)
Q Consensus 202 ~E 203 (332)
++
T Consensus 330 P~ 331 (364)
T 1vyr_A 330 PD 331 (364)
T ss_dssp TT
T ss_pred hh
Confidence 44
|
| >2p10_A MLL9387 protein; putative phosphonopyruvate hydrolase, structural genomics, J center for structural genomics, JCSG; HET: MSE; 2.15A {Mesorhizobium loti} SCOP: c.1.12.9 | Back alignment and structure |
|---|
Probab=98.59 E-value=1.1e-06 Score=78.47 Aligned_cols=190 Identities=20% Similarity=0.266 Sum_probs=121.2
Q ss_pred cCCccceecCCCCCCCCcHHHHHHHHhCCCceeecCCC-----------------CCCH-HHHHHHHHHHHhhc-CCcEE
Q 020013 7 LGFEYGIVQAPLGPDISGPELVAAVANAGGLGLLRAPD-----------------WEAP-DYLRDLIRKTRSLT-ERPFG 67 (332)
Q Consensus 7 l~~~~Pii~apM~~g~s~~~la~avs~aGglG~i~~~~-----------------~~~~-e~~~~~i~~~r~~~-~~p~g 67 (332)
..-..|||.++-+ + -+.+..++.||..+|-..+ |.+. +...+.-+++-... +.|+-
T Consensus 24 i~~~~~iig~gaG----t-GlsAk~~e~gGaDlii~ynsGrfR~~G~~slag~lpygnaN~iv~e~~~evlp~v~~iPV~ 98 (286)
T 2p10_A 24 IRAGEPIIGGGAG----T-GLSAKSEEAGDIDLIVIYNSGRYRMAGRGSLAGLLAYGNANQIVVDMAREVLPVVRHTPVL 98 (286)
T ss_dssp HHTTCCEEEEEES----S-HHHHHHHHHTTCSEEEECHHHHHHHTTCCGGGGGBTEEEHHHHHHHHHHHHGGGCSSSCEE
T ss_pred HhcCCceEEEecc----c-chhhHHHHhCCCCEEEEeccchhhhcCccchhhhccccCHHHHHHHHHHhhhccCCCCCEE
Confidence 3356799955542 2 4556677788888874311 1122 22233333333222 56766
Q ss_pred EEeecCCCC---HHHHHHHHhcCCcEEEEccC--------------C---C---cHHHHHHHHhCCCEEEEecCCHHHHH
Q 020013 68 VGVVLAFPH---NENIKAILSEKVAVLQVSWG--------------E---Y---SEELVLEAHSAGVKVVPQVGSFDEAR 124 (332)
Q Consensus 68 vnl~~~~~~---~~~~~~~~~~~~~~I~~~~g--------------~---~---~~~~i~~~~~~g~~v~~~v~s~~~a~ 124 (332)
.++-..+|. ...++.+.+.|+..| .++- . - -.+.++++++.|+..++.+.|+++++
T Consensus 99 Agv~~~DP~~~~g~~Le~lk~~Gf~Gv-~N~ptvglidG~fr~~LEE~gm~~~~eve~I~~A~~~gL~Ti~~v~~~eeA~ 177 (286)
T 2p10_A 99 AGVNGTDPFMVMSTFLRELKEIGFAGV-QNFPTVGLIDGLFRQNLEETGMSYAQEVEMIAEAHKLDLLTTPYVFSPEDAV 177 (286)
T ss_dssp EEECTTCTTCCHHHHHHHHHHHTCCEE-EECSCGGGCCHHHHHHHHHTTCCHHHHHHHHHHHHHTTCEECCEECSHHHHH
T ss_pred EEECCcCCCcCHHHHHHHHHHhCCceE-EECCCcccccchhhhhHhhcCCCHHHHHHHHHHHHHCCCeEEEecCCHHHHH
Confidence 664444442 456788888999999 4432 0 0 12466778889999999999999999
Q ss_pred HHHHcCCCEEEEecC-CCCcccCC--CCch---hhhHHHHHHHhCC--CCCcEEeec-CcCCHHHHHHHHHc--Ccceee
Q 020013 125 KAVNAGVDAIIVQGR-EAGGHVIG--QDGL---ISLLPMVVDLIGD--RDIPIIAAG-GIVDARGYVAALSL--GAQGIC 193 (332)
Q Consensus 125 ~a~~~g~D~ivv~G~-eaGGh~~~--~~~~---~~ll~~i~~~~~~--~~iPviaaG-GI~~~~~v~~al~~--GA~gV~ 193 (332)
...++|+|+|+++-. ..||-.+. ..+. ...+.++.++.+. .++.|++.| ||.+++|+..++.+ |++|+.
T Consensus 178 amA~agpDiI~~h~glT~gglIG~~~avs~~~~~e~i~~i~~a~~~vnpdvivLc~gGpIstpeDv~~~l~~t~G~~G~~ 257 (286)
T 2p10_A 178 AMAKAGADILVCHMGLTTGGAIGARSGKSMDDCVSLINECIEAARTIRDDIIILSHGGPIANPEDARFILDSCQGCHGFY 257 (286)
T ss_dssp HHHHHTCSEEEEECSCC---------CCCHHHHHHHHHHHHHHHHHHCSCCEEEEESTTCCSHHHHHHHHHHCTTCCEEE
T ss_pred HHHHcCCCEEEECCCCCCCCcccCCCcccHHHhHHHHHHHHHHHHHhCCCcEEEecCCCCCCHHHHHHHHhcCCCccEEE
Confidence 999999999999744 33443311 1121 3455555554421 266677666 99999999999999 999999
Q ss_pred eccccccCc
Q 020013 194 LGTRFVASE 202 (332)
Q Consensus 194 ~GT~fl~t~ 202 (332)
.+|.+...+
T Consensus 258 gASsier~p 266 (286)
T 2p10_A 258 GASSMERLP 266 (286)
T ss_dssp ESHHHHHHH
T ss_pred eehhhhcCC
Confidence 999987663
|
| >2f6u_A GGGPS, (S)-3-O-geranylgeranylglyceryl phosphate synthase; non-canonical TIM-barrel, prenyltransferase, archaeal lipid synthesis, dimer; HET: CIT; 1.55A {Archaeoglobus fulgidus} SCOP: c.1.4.1 PDB: 2f6x_A* | Back alignment and structure |
|---|
Probab=98.54 E-value=9.6e-07 Score=77.80 Aligned_cols=169 Identities=18% Similarity=0.120 Sum_probs=110.0
Q ss_pred cceecCCCCCCCCcHHHHHHHHhCCC----ceeecCCCCCCHHHHHHHHHHHHhhcCCcEEEEeecCCCCHHHHHHHHhc
Q 020013 11 YGIVQAPLGPDISGPELVAAVANAGG----LGLLRAPDWEAPDYLRDLIRKTRSLTERPFGVGVVLAFPHNENIKAILSE 86 (332)
Q Consensus 11 ~Pii~apM~~g~s~~~la~avs~aGg----lG~i~~~~~~~~e~~~~~i~~~r~~~~~p~gvnl~~~~~~~~~~~~~~~~ 86 (332)
|=...+|=- -.+.+.+.++.++|. +|. + ...+.+.+.+.++++|+ ++.|+.+ +...+ +.+ +.
T Consensus 11 ~it~gDP~~--~~t~~~~~~l~~~GaD~IelG~--S-~g~t~~~~~~~v~~ir~-~~~Pivl--~~y~~--n~i----~~ 76 (234)
T 2f6u_A 11 HITKLDPDR--TNTDEIIKAVADSGTDAVMISG--T-QNVTYEKARTLIEKVSQ-YGLPIVV--EPSDP--SNV----VY 76 (234)
T ss_dssp EEEEECTTS--CCCHHHHHHHHTTTCSEEEECC--C-TTCCHHHHHHHHHHHTT-SCCCEEE--CCSSC--CCC----CC
T ss_pred EEEeeCCCc--cccHHHHHHHHHcCCCEEEECC--C-CCCCHHHHHHHHHHhcC-CCCCEEE--ecCCc--chh----hc
Confidence 444455642 356777888888773 333 2 23678889999999998 7778665 22211 111 66
Q ss_pred CCcEEEEcc--CCCcHHHH-----HHH-------HhCC-----CEEEEe----c---------------CCHHHHHHHHH
Q 020013 87 KVAVLQVSW--GEYSEELV-----LEA-------HSAG-----VKVVPQ----V---------------GSFDEARKAVN 128 (332)
Q Consensus 87 ~~~~I~~~~--g~~~~~~i-----~~~-------~~~g-----~~v~~~----v---------------~s~~~a~~a~~ 128 (332)
++|.+.+.- .....+++ +.+ ++.| +.++.. + .+++.++...+
T Consensus 77 gvDg~iipdLp~ee~~~~~~g~~~~~~~~~~~~~~~~g~~~~~l~~I~~gYil~~P~~~~~rl~~g~~~~~~e~~~~~a~ 156 (234)
T 2f6u_A 77 DVDYLFVPTVLNSADGDWITGKHAQWVRMHYENLQKFTEIIESEFIQIEGYIVLNPDSAVARVTKALCNIDKELAASYAL 156 (234)
T ss_dssp CSSEEEEEEETTBSBGGGTTHHHHHHHHTTGGGHHHHHHHHHSTTEEEEEEEECCTTSHHHHHTTBCCCCCHHHHHHHHH
T ss_pred CCCEEEEcccCCCCCHHHHhhhHHHHHHhhhhhHHHcCCcccceeeeecceEEECCCCceEEeecCCCCCCHHHHHHHHH
Confidence 888887641 11122333 333 4455 554442 1 15555666666
Q ss_pred cCC-----CEEEEecCCCCcccCCCCchhhhHHHHHHHhCCCCCcEEeecCcCCHHHHHHHHHcCcceeeeccccccCcc
Q 020013 129 AGV-----DAIIVQGREAGGHVIGQDGLISLLPMVVDLIGDRDIPIIAAGGIVDARGYVAALSLGAQGICLGTRFVASEE 203 (332)
Q Consensus 129 ~g~-----D~ivv~G~eaGGh~~~~~~~~~ll~~i~~~~~~~~iPviaaGGI~~~~~v~~al~~GA~gV~~GT~fl~t~E 203 (332)
.|. .+|.+.+ . |. .....++.++++... ++|+++.|||++++++.+++. |||+|++||++....|
T Consensus 157 ~g~~~l~~~~Vyl~~--~-G~----~~~~~~i~~i~~~~~--~~Pv~vGgGI~s~e~a~~~~~-gAd~VIVGSa~v~~~~ 226 (234)
T 2f6u_A 157 VGEKLFNLPIIYIEY--S-GT----YGNPELVAEVKKVLD--KARLFYGGGIDSREKAREMLR-YADTIIVGNVIYEKGI 226 (234)
T ss_dssp HHHHTTCCSEEEEEC--T-TS----CCCHHHHHHHHHHCS--SSEEEEESCCCSHHHHHHHHH-HSSEEEECHHHHHHCH
T ss_pred hhhhhcCCCEEEEeC--C-CC----cchHHHHHHHHHhCC--CCCEEEEecCCCHHHHHHHHh-CCCEEEEChHHHhCHH
Confidence 655 7777766 2 22 234778888888752 689999999999999999999 9999999999986543
|
| >1icp_A OPR1, 12-oxophytodienoate reductase 1; beta-alpha-barrel, protein-FMN-PEG complex, oxidoreductase; HET: FMN 2PE; 1.90A {Solanum lycopersicum} SCOP: c.1.4.1 PDB: 1icq_A* 1ics_A* 3hgr_A* 1vji_A* 2q3r_A* | Back alignment and structure |
|---|
Probab=98.51 E-value=6.8e-06 Score=77.67 Aligned_cols=118 Identities=14% Similarity=0.080 Sum_probs=79.0
Q ss_pred HHHHhcCCcEEEEccCC---------C-------------------cHHHHHHHHhC-CC-EEEEecC------------
Q 020013 81 KAILSEKVAVLQVSWGE---------Y-------------------SEELVLEAHSA-GV-KVVPQVG------------ 118 (332)
Q Consensus 81 ~~~~~~~~~~I~~~~g~---------~-------------------~~~~i~~~~~~-g~-~v~~~v~------------ 118 (332)
+.+.++|.|.|.+|.++ + ..++++.+++. |. +|...++
T Consensus 174 ~~a~~aGfDgVEih~a~GyLl~qFlsp~~N~R~D~yGGslenR~r~~~eiv~aVr~avg~~~V~vrls~~~~~~g~~~~~ 253 (376)
T 1icp_A 174 RNAIEAGFDGVEIHGAHGYLIDQFMKDQVNDRSDKYGGSLENRCRFALEIVEAVANEIGSDRVGIRISPFAHYNEAGDTN 253 (376)
T ss_dssp HHHHHTTCSEEEEEECTTSHHHHHHCTTTCCCCSTTSSSHHHHHHHHHHHHHHHHHHHCGGGEEEEECTTCCTTTCCCSC
T ss_pred HHHHHcCCCEEEEcCccchhhhhccCCcccCCCCccCccHHHhHHHHHHHHHHHHHHhcCCceEEEeccccccCCCCCCC
Confidence 35567899999998643 1 12445555542 31 5665553
Q ss_pred C----HHHHHHHHHcCCCEEEEecCCCCcccCCCCchhhhHHHHHHHhCCCCCcEEeecCcCCHHHHHHHHHcC-cceee
Q 020013 119 S----FDEARKAVNAGVDAIIVQGREAGGHVIGQDGLISLLPMVVDLIGDRDIPIIAAGGIVDARGYVAALSLG-AQGIC 193 (332)
Q Consensus 119 s----~~~a~~a~~~g~D~ivv~G~eaGGh~~~~~~~~~ll~~i~~~~~~~~iPviaaGGI~~~~~v~~al~~G-A~gV~ 193 (332)
+ .+-++.+.+.|+|+|-+.+....... .....+.++..+++.+ ++||++.||| +++++.++|+.| ||.|.
T Consensus 254 ~~~~~~~la~~le~~Gvd~i~v~~~~~~~~~-~~~~~~~~~~~vr~~~---~iPvi~~G~i-~~~~a~~~l~~g~aD~V~ 328 (376)
T 1icp_A 254 PTALGLYMVESLNKYDLAYCHVVEPRMKTAW-EKIECTESLVPMRKAY---KGTFIVAGGY-DREDGNRALIEDRADLVA 328 (376)
T ss_dssp HHHHHHHHHHHHGGGCCSEEEEECCSCCC-------CCCCSHHHHHHC---CSCEEEESSC-CHHHHHHHHHTTSCSEEE
T ss_pred CHHHHHHHHHHHHHcCCCEEEEcCCcccCCC-CccccHHHHHHHHHHc---CCCEEEeCCC-CHHHHHHHHHCCCCcEEe
Confidence 1 23345667889999999653211000 0001245567788777 7999999999 999999999988 99999
Q ss_pred eccccccCcc
Q 020013 194 LGTRFVASEE 203 (332)
Q Consensus 194 ~GT~fl~t~E 203 (332)
+|+.|+..++
T Consensus 329 ~gR~~l~~P~ 338 (376)
T 1icp_A 329 YGRLFISNPD 338 (376)
T ss_dssp ESHHHHHCTT
T ss_pred ecHHHHhCcc
Confidence 9999998754
|
| >1mzh_A Deoxyribose-phosphate aldolase; alpha-beta barrel, structural genomics, PSI, protein structure initiative; 2.00A {Aquifex aeolicus} SCOP: c.1.10.1 | Back alignment and structure |
|---|
Probab=98.48 E-value=4.5e-07 Score=79.75 Aligned_cols=110 Identities=19% Similarity=0.235 Sum_probs=71.6
Q ss_pred HHHHHhcCCcEEEE--ccCC----CcH---HHHHHHHhCCCEEEEec------CCHHH----HHHHHHcCCCEEEEe-cC
Q 020013 80 IKAILSEKVAVLQV--SWGE----YSE---ELVLEAHSAGVKVVPQV------GSFDE----ARKAVNAGVDAIIVQ-GR 139 (332)
Q Consensus 80 ~~~~~~~~~~~I~~--~~g~----~~~---~~i~~~~~~g~~v~~~v------~s~~~----a~~a~~~g~D~ivv~-G~ 139 (332)
.+.+.+.++|.|.+ +.|+ ... +.++.+++..-+++.++ .+.++ ++.+.++|+|+|... |+
T Consensus 76 ~~~A~~~Gad~Id~viN~g~~~~~~~~~~~~~i~~v~~a~~pv~vKvi~e~~~l~~~~~~~~a~~a~eaGad~I~tstg~ 155 (225)
T 1mzh_A 76 AVEAVRDGAQELDIVWNLSAFKSEKYDFVVEELKEIFRETPSAVHKVIVETPYLNEEEIKKAVEICIEAGADFIKTSTGF 155 (225)
T ss_dssp HHHHHHTTCSEEEEECCHHHHHTTCHHHHHHHHHHHHHTCTTSEEEEECCGGGCCHHHHHHHHHHHHHHTCSEEECCCSC
T ss_pred HHHHHHcCCCEEEEEecHHHHhcCChHHHHHHHHHHHHHhcCceEEEEEeCCCCCHHHHHHHHHHHHHhCCCEEEECCCC
Confidence 45677889999985 3222 122 23445555321333333 24333 566788999999542 33
Q ss_pred CCCcccCCCCchhhhHHHHHHHhCCCCCcEEeecCcCCHHHHHHHHHcCcceeeecc
Q 020013 140 EAGGHVIGQDGLISLLPMVVDLIGDRDIPIIAAGGIVDARGYVAALSLGAQGICLGT 196 (332)
Q Consensus 140 eaGGh~~~~~~~~~ll~~i~~~~~~~~iPviaaGGI~~~~~v~~al~~GA~gV~~GT 196 (332)
..|| .++..++.+++.++. ++||+++|||.+++++.+++.+|||.|.+++
T Consensus 156 ~~gg------a~~~~i~~v~~~v~~-~ipVia~GGI~t~~da~~~l~aGA~~iG~s~ 205 (225)
T 1mzh_A 156 APRG------TTLEEVRLIKSSAKG-RIKVKASGGIRDLETAISMIEAGADRIGTSS 205 (225)
T ss_dssp SSSC------CCHHHHHHHHHHHTT-SSEEEEESSCCSHHHHHHHHHTTCSEEEESC
T ss_pred CCCC------CCHHHHHHHHHHhCC-CCcEEEECCCCCHHHHHHHHHhCchHHHHcc
Confidence 2222 346777788777632 6999999999999999999999999655443
|
| >3hgj_A Chromate reductase; TIM barrel, oxidoreductase; HET: FMN; 2.00A {Thermus scotoductus} SCOP: c.1.4.0 PDB: 3hf3_A* | Back alignment and structure |
|---|
Probab=98.48 E-value=1.7e-06 Score=81.02 Aligned_cols=120 Identities=15% Similarity=0.170 Sum_probs=83.6
Q ss_pred HHHHhcCCcEEEEccCC---------C-------------------cHHHHHHHHhC---CCEEEEecC---------CH
Q 020013 81 KAILSEKVAVLQVSWGE---------Y-------------------SEELVLEAHSA---GVKVVPQVG---------SF 120 (332)
Q Consensus 81 ~~~~~~~~~~I~~~~g~---------~-------------------~~~~i~~~~~~---g~~v~~~v~---------s~ 120 (332)
+.+.++|.|.|.+|.++ + ..++++.+++. +.+|...++ +.
T Consensus 159 ~~a~~aGfDgVEih~a~GyLl~qFlsp~~N~R~D~yGGslenR~r~~~eiv~aVR~avG~d~pV~vRls~~~~~~~g~~~ 238 (349)
T 3hgj_A 159 RRALRAGFQVIELHMAHGYLLSSFLSPLSNQRTDAYGGSLENRMRFPLQVAQAVREVVPRELPLFVRVSATDWGEGGWSL 238 (349)
T ss_dssp HHHHHTTCCEEEEEECTTSHHHHHHCTTTCCCCSTTSSSHHHHHHHHHHHHHHHHHHSCTTSCEEEEEESCCCSTTSCCH
T ss_pred HHHHHcCCCEEEECCccchHHHHhcCCcccccCCCCCcCHHHHHHHHHHHHHHHHHHhcCCceEEEEeccccccCCCCCH
Confidence 44567899999998653 1 12455556553 455665443 34
Q ss_pred HH----HHHHHHcCCCEEEEec-CCCCcc-c-CCCCchhhhHHHHHHHhCCCCCcEEeecCcCCHHHHHHHHHcC-ccee
Q 020013 121 DE----ARKAVNAGVDAIIVQG-REAGGH-V-IGQDGLISLLPMVVDLIGDRDIPIIAAGGIVDARGYVAALSLG-AQGI 192 (332)
Q Consensus 121 ~~----a~~a~~~g~D~ivv~G-~eaGGh-~-~~~~~~~~ll~~i~~~~~~~~iPviaaGGI~~~~~v~~al~~G-A~gV 192 (332)
++ ++.+.+.|+|+|-+.. ...... . .++...+.++.++++.+ ++||++.|||.+++++.++++.| ||.|
T Consensus 239 ~~~~~la~~L~~~Gvd~i~vs~g~~~~~~~~~~~~~~~~~~~~~ir~~~---~iPVi~~Ggi~t~e~a~~~l~~G~aD~V 315 (349)
T 3hgj_A 239 EDTLAFARRLKELGVDLLDCSSGGVVLRVRIPLAPGFQVPFADAVRKRV---GLRTGAVGLITTPEQAETLLQAGSADLV 315 (349)
T ss_dssp HHHHHHHHHHHHTTCCEEEEECCCSCSSSCCCCCTTTTHHHHHHHHHHH---CCEEEECSSCCCHHHHHHHHHTTSCSEE
T ss_pred HHHHHHHHHHHHcCCCEEEEecCCcCcccccCCCccccHHHHHHHHHHc---CceEEEECCCCCHHHHHHHHHCCCceEE
Confidence 44 5566788999999863 211100 0 01112466778888887 79999999999999999999999 9999
Q ss_pred eeccccccCcc
Q 020013 193 CLGTRFVASEE 203 (332)
Q Consensus 193 ~~GT~fl~t~E 203 (332)
.+|+.|+..++
T Consensus 316 ~iGR~~lanPd 326 (349)
T 3hgj_A 316 LLGRVLLRDPY 326 (349)
T ss_dssp EESTHHHHCTT
T ss_pred EecHHHHhCch
Confidence 99999997654
|
| >3gr7_A NADPH dehydrogenase; flavin, FMN, beta-alpha-barrel, oxidoreductase, flavoprotein; HET: FMN; 2.30A {Geobacillus kaustophilus} PDB: 3gr8_A* | Back alignment and structure |
|---|
Probab=98.47 E-value=1.7e-06 Score=80.66 Aligned_cols=120 Identities=15% Similarity=0.141 Sum_probs=83.5
Q ss_pred HHHHhcCCcEEEEccCC---------C-------------------cHHHHHHHHhC-CCEEEEecC-------------
Q 020013 81 KAILSEKVAVLQVSWGE---------Y-------------------SEELVLEAHSA-GVKVVPQVG------------- 118 (332)
Q Consensus 81 ~~~~~~~~~~I~~~~g~---------~-------------------~~~~i~~~~~~-g~~v~~~v~------------- 118 (332)
+.+.++|.|.|.+|.++ + ..++++.+++. +.+|...++
T Consensus 151 ~~a~~aGfDgVEih~a~GyLl~qFlsp~~N~R~D~yGGslenR~r~~~eiv~avr~~v~~pv~vRls~~~~~~~g~~~~~ 230 (340)
T 3gr7_A 151 RRAKEAGFDVIEIHAAHGYLINEFLSPLSNRRQDEYGGSPENRYRFLGEVIDAVREVWDGPLFVRISASDYHPDGLTAKD 230 (340)
T ss_dssp HHHHHHTCSEEEEEECTTCHHHHHHCTTTCCCCSTTSSSHHHHHHHHHHHHHHHHHHCCSCEEEEEESCCCSTTSCCGGG
T ss_pred HHHHHcCCCEEEEccccchHHHHcCCCccCcCCCcccCCHHHHHHHHHHHHHHHHHhcCCceEEEeccccccCCCCCHHH
Confidence 34567899999998652 1 12445555543 556654433
Q ss_pred CHHHHHHHHHcCCCEEEEec-CCCCcc-cCCCCchhhhHHHHHHHhCCCCCcEEeecCcCCHHHHHHHHHcC-cceeeec
Q 020013 119 SFDEARKAVNAGVDAIIVQG-REAGGH-VIGQDGLISLLPMVVDLIGDRDIPIIAAGGIVDARGYVAALSLG-AQGICLG 195 (332)
Q Consensus 119 s~~~a~~a~~~g~D~ivv~G-~eaGGh-~~~~~~~~~ll~~i~~~~~~~~iPviaaGGI~~~~~v~~al~~G-A~gV~~G 195 (332)
..+-++.+.+.|+|+|-+.. ....-. ..++...+.++.++++.+ ++||++.|||.+++++.+++..| ||.|++|
T Consensus 231 ~~~la~~L~~~Gvd~i~vs~g~~~~~~~~~~~~~~~~~~~~ik~~~---~iPVi~~GgI~s~e~a~~~L~~G~aD~V~iG 307 (340)
T 3gr7_A 231 YVPYAKRMKEQGVDLVDVSSGAIVPARMNVYPGYQVPFAELIRREA---DIPTGAVGLITSGWQAEEILQNGRADLVFLG 307 (340)
T ss_dssp HHHHHHHHHHTTCCEEEEECCCSSCCCCCCCTTTTHHHHHHHHHHT---TCCEEEESSCCCHHHHHHHHHTTSCSEEEEC
T ss_pred HHHHHHHHHHcCCCEEEEecCCccCCCCCCCccccHHHHHHHHHHc---CCcEEeeCCCCCHHHHHHHHHCCCeeEEEec
Confidence 13456677889999999863 211100 001122467788888887 79999999999999999999999 9999999
Q ss_pred cccccCcc
Q 020013 196 TRFVASEE 203 (332)
Q Consensus 196 T~fl~t~E 203 (332)
+.|+..++
T Consensus 308 R~~lanPd 315 (340)
T 3gr7_A 308 RELLRNPY 315 (340)
T ss_dssp HHHHHCTT
T ss_pred HHHHhCch
Confidence 99998754
|
| >3kts_A Glycerol uptake operon antiterminator regulatory; structural genomics, PSI-2, protein structur initiative; HET: UNL; 2.75A {Listeria monocytogenes str} | Back alignment and structure |
|---|
Probab=98.44 E-value=6.9e-06 Score=69.84 Aligned_cols=175 Identities=11% Similarity=0.126 Sum_probs=112.4
Q ss_pred CcchhhcCCccceecCCCCCCCCcHHHHHHHHhCC-CceeecCCCCCCHHHHHHHHHHHHhhcCCcEEEEeec---CCCC
Q 020013 1 MGWRGMLGFEYGIVQAPLGPDISGPELVAAVANAG-GLGLLRAPDWEAPDYLRDLIRKTRSLTERPFGVGVVL---AFPH 76 (332)
Q Consensus 1 ~~~~~~l~~~~Pii~apM~~g~s~~~la~avs~aG-glG~i~~~~~~~~e~~~~~i~~~r~~~~~p~gvnl~~---~~~~ 76 (332)
|++...|. ++||| |- +.+.+....+.+.- -.-|+..+ +...+.+.++++++..+. .-|++=. -..+
T Consensus 1 ~~~~~~~~-~~piI--~A---vr~~~~l~~al~s~~~~ifll~g---~i~~l~~~v~~lk~~~K~-v~Vh~Dli~Gls~d 70 (192)
T 3kts_A 1 MSLELPFS-NQSII--PA---AHNQKDMEKILELDLTYMVMLET---HVAQLKALVKYAQAGGKK-VLLHADLVNGLKND 70 (192)
T ss_dssp --CCCSCT-TCCEE--EE---ESSSHHHHHHTTSSCCEEEECSE---ETTTHHHHHHHHHHTTCE-EEEEGGGEETCCCS
T ss_pred Cchhhhhh-cCCEE--EE---ecCHHHHHHHHcCCCCEEEEecC---cHHHHHHHHHHHHHcCCe-EEEecCchhccCCc
Confidence 55444444 68999 32 34434333332332 34444332 334567778888876543 3344311 1234
Q ss_pred HHHHHHHHh-cCCcEEEEccCCCcHHHHHHHHhCCCEEEEec---CC--HHH-HHHHHHcCCCEEEEecCCCCcccCCCC
Q 020013 77 NENIKAILS-EKVAVLQVSWGEYSEELVLEAHSAGVKVVPQV---GS--FDE-ARKAVNAGVDAIIVQGREAGGHVIGQD 149 (332)
Q Consensus 77 ~~~~~~~~~-~~~~~I~~~~g~~~~~~i~~~~~~g~~v~~~v---~s--~~~-a~~a~~~g~D~ivv~G~eaGGh~~~~~ 149 (332)
+..++.+.+ .++|.|... -...++.+++.|+..+..+ .| .+. .+...+..+|++=+- .|..
T Consensus 71 ~~ai~fL~~~~~pdGIIsT----k~~~i~~Ak~~gL~tIqR~FliDS~al~~~~~~i~~~~PD~iEiL--------PGi~ 138 (192)
T 3kts_A 71 DYAIDFLCTEICPDGIIST----RGNAIMKAKQHKMLAIQRLFMIDSSAYNKGVALIQKVQPDCIELL--------PGII 138 (192)
T ss_dssp HHHHHHHHHTTCCSEEEES----CHHHHHHHHHTTCEEEEEEECCSHHHHHHHHHHHHHHCCSEEEEE--------CTTC
T ss_pred HHHHHHHHhCCCCCEEEeC----cHHHHHHHHHCCCeEEEEEEEEEcchHHHHHHHHhhcCCCEEEEC--------Cchh
Confidence 566666665 489998765 3568899999999877543 22 222 333456689988542 1222
Q ss_pred chhhhHHHHHHHhCCCCCcEEeecCcCCHHHHHHHHHcCcceeeeccccccCc
Q 020013 150 GLISLLPMVVDLIGDRDIPIIAAGGIVDARGYVAALSLGAQGICLGTRFVASE 202 (332)
Q Consensus 150 ~~~~ll~~i~~~~~~~~iPviaaGGI~~~~~v~~al~~GA~gV~~GT~fl~t~ 202 (332)
...++++++.+ ++|||+.|+|.+.+++.+++.+||++|..++..++.-
T Consensus 139 --p~iI~~i~~~~---~~PiIaGGlI~~~edv~~al~aGA~aVsTs~~~LW~~ 186 (192)
T 3kts_A 139 --PEQVQKMTQKL---HIPVIAGGLIETSEQVNQVIASGAIAVTTSNKHLWEG 186 (192)
T ss_dssp --HHHHHHHHHHH---CCCEEEESSCCSHHHHHHHHTTTEEEEEECCGGGGTT
T ss_pred --HHHHHHHHHhc---CCCEEEECCcCCHHHHHHHHHcCCeEEEeCCHHHhCc
Confidence 25778888877 7999999999999999999999999999999988753
|
| >1q6o_A Humps, 3-keto-L-gulonate 6-phosphate decarboxylase, D-; beta barrel, lyase; HET: LG6; 1.20A {Escherichia coli} SCOP: c.1.2.3 PDB: 1kw1_A* 1q6l_A* 1kv8_A* 1q6q_A* 1q6r_A* 1xbv_A* 1so5_A* 1so4_A* 1xby_A* 1so3_A* 1so6_A* 1xbz_A* 1xbx_A* | Back alignment and structure |
|---|
Probab=98.44 E-value=2e-06 Score=75.05 Aligned_cols=139 Identities=10% Similarity=0.047 Sum_probs=88.8
Q ss_pred HHHHHHhh---cCCcEEEEeecCCCCHHHHHHHHhcCCcEEEEccCCC---cHHHHHHHHhCCCEEEE----ecCCHHHH
Q 020013 54 LIRKTRSL---TERPFGVGVVLAFPHNENIKAILSEKVAVLQVSWGEY---SEELVLEAHSAGVKVVP----QVGSFDEA 123 (332)
Q Consensus 54 ~i~~~r~~---~~~p~gvnl~~~~~~~~~~~~~~~~~~~~I~~~~g~~---~~~~i~~~~~~g~~v~~----~v~s~~~a 123 (332)
.++.+|+. ++.++-+.++. .+ +...+.+.+.|+|+|.+|.... ....++.+++.|.+++. .++ ....
T Consensus 46 ~i~~l~~~~p~~~v~lD~kl~d-ip-~t~~~~~~~~Gad~itvh~~~g~~~l~~~~~~~~~~g~~~~~~ll~~~t-~~~~ 122 (216)
T 1q6o_A 46 AVRDLKALYPHKIVLADAKIAD-AG-KILSRMCFEANADWVTVICCADINTAKGALDVAKEFNGDVQIELTGYWT-WEQA 122 (216)
T ss_dssp HHHHHHHHCTTSEEEEEEEECS-CH-HHHHHHHHHTTCSEEEEETTSCHHHHHHHHHHHHHTTCEEEEEECSCCC-HHHH
T ss_pred HHHHHHHhCCCCeEEEEEEecc-cH-HHHHHHHHhCCCCEEEEeccCCHHHHHHHHHHHHHcCCCceeeeeeCCC-hhhH
Confidence 35555554 23445556553 22 4556778889999999985322 23455667778888754 333 4455
Q ss_pred HHHHHcCCCEEEEec----CCCCcccCCCCchhhhHHHHHHHhCCCCCcEEeecCcCCHHHHHHHHHcCcceeeeccccc
Q 020013 124 RKAVNAGVDAIIVQG----REAGGHVIGQDGLISLLPMVVDLIGDRDIPIIAAGGIVDARGYVAALSLGAQGICLGTRFV 199 (332)
Q Consensus 124 ~~a~~~g~D~ivv~G----~eaGGh~~~~~~~~~ll~~i~~~~~~~~iPviaaGGI~~~~~v~~al~~GA~gV~~GT~fl 199 (332)
..+.+.|.+.+++.- .+.| .. + ....+..+++..+. ++||++.||| +++++.+++.+|||++++||+++
T Consensus 123 ~~l~~~~~~~~vl~~a~~~~~~G-~~-g---~~~~i~~lr~~~~~-~~~i~v~GGI-~~~~~~~~~~aGad~ivvG~~I~ 195 (216)
T 1q6o_A 123 QQWRDAGIGQVVYHRSRDAQAAG-VA-W---GEADITAIKRLSDM-GFKVTVTGGL-ALEDLPLFKGIPIHVFIAGRSIR 195 (216)
T ss_dssp HHHHHTTCCEEEEECCHHHHHTT-CC-C---CHHHHHHHHHHHHT-TCEEEEESSC-CGGGGGGGTTSCCSEEEESHHHH
T ss_pred HHHHhcCcHHHHHHHHHHHHhcC-CC-C---CHHHHHHHHHhcCC-CCcEEEECCc-ChhhHHHHHHcCCCEEEEeehhc
Confidence 556666877777621 1122 11 1 13344555554421 5889999999 68999999999999999999988
Q ss_pred cCc
Q 020013 200 ASE 202 (332)
Q Consensus 200 ~t~ 202 (332)
.++
T Consensus 196 ~a~ 198 (216)
T 1q6o_A 196 DAA 198 (216)
T ss_dssp TSS
T ss_pred CCC
Confidence 754
|
| >1ps9_A 2,4-dienoyl-COA reductase; iron-sulfur, TIM barrel, flavodoxin, flavin, electron transfer, hydride transfer, oxidoreductase; HET: FAD FMN NAP MDE; 2.20A {Escherichia coli} SCOP: c.1.4.1 c.3.1.1 c.4.1.1 | Back alignment and structure |
|---|
Probab=98.40 E-value=3.4e-06 Score=85.66 Aligned_cols=120 Identities=16% Similarity=0.176 Sum_probs=79.0
Q ss_pred HHHHhcCCcEEEEccCC---------C-------------------cHHHHHHHHhC---CCEEEEecC---------CH
Q 020013 81 KAILSEKVAVLQVSWGE---------Y-------------------SEELVLEAHSA---GVKVVPQVG---------SF 120 (332)
Q Consensus 81 ~~~~~~~~~~I~~~~g~---------~-------------------~~~~i~~~~~~---g~~v~~~v~---------s~ 120 (332)
+.+.++|.|.|.+|.++ + ..++++.+++. +.+++..++ +.
T Consensus 148 ~~a~~aGfd~veih~~~gyl~~qFlsp~~n~r~d~yGgs~~~r~r~~~eiv~avr~~vG~~~~v~vrls~~~~~~~g~~~ 227 (671)
T 1ps9_A 148 QLAREAGYDGVEVMGSEGYLINEFLTLRTNQRSDQWGGDYRNRMRFAVEVVRAVRERVGNDFIIIYRLSMLDLVEDGGTF 227 (671)
T ss_dssp HHHHHTTCSEEEEEECBTSHHHHHHCTTTCCCCSTTSSSHHHHHHHHHHHHHHHHHHHCSSSEEEEEEEEECCSTTCCCH
T ss_pred HHHHHcCCCEEEEccccchHHHHhCCCccCCCcCcCCCcHHHHHHHHHHHHHHHHHHcCCCceEEEEECccccCCCCCCH
Confidence 34567899999998543 1 12445555542 556654221 33
Q ss_pred H----HHHHHHHcCCCEEEEecCCCCccc------CCCCchhhhHHHHHHHhCCCCCcEEeecCcCCHHHHHHHHHcC-c
Q 020013 121 D----EARKAVNAGVDAIIVQGREAGGHV------IGQDGLISLLPMVVDLIGDRDIPIIAAGGIVDARGYVAALSLG-A 189 (332)
Q Consensus 121 ~----~a~~a~~~g~D~ivv~G~eaGGh~------~~~~~~~~ll~~i~~~~~~~~iPviaaGGI~~~~~v~~al~~G-A 189 (332)
+ .++.+.+.|+|+|-+.+....... .+....+.++.++++.+ ++||++.|||.+++++.++++.| |
T Consensus 228 ~~~~~~a~~l~~~g~d~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~---~iPvi~~Ggi~~~~~a~~~l~~g~a 304 (671)
T 1ps9_A 228 AETVELAQAIEAAGATIINTGIGWHEARIPTIATPVPRGAFSWVTRKLKGHV---SLPLVTTNRINDPQVADDILSRGDA 304 (671)
T ss_dssp HHHHHHHHHHHHHTCSEEEEEECBTTCSSCSSSTTSCTTTTHHHHHHHTTSC---SSCEEECSSCCSHHHHHHHHHTTSC
T ss_pred HHHHHHHHHHHhcCCCEEEcCCCccccccccccccCCcchHHHHHHHHHHhc---CceEEEeCCCCCHHHHHHHHHcCCC
Confidence 3 355667889999988542110000 00111235566666655 79999999999999999999998 9
Q ss_pred ceeeeccccccCcc
Q 020013 190 QGICLGTRFVASEE 203 (332)
Q Consensus 190 ~gV~~GT~fl~t~E 203 (332)
|+|.+|+.|+..++
T Consensus 305 D~V~~gR~~l~~P~ 318 (671)
T 1ps9_A 305 DMVSMARPFLADAE 318 (671)
T ss_dssp SEEEESTHHHHCTT
T ss_pred CEEEeCHHHHhCcH
Confidence 99999999998753
|
| >3tdn_A FLR symmetric alpha-beta TIM barrel; symmetric superfold, de novo protein; 1.40A {Synthetic construct} PDB: 3og3_A 3tdm_A | Back alignment and structure |
|---|
Probab=98.37 E-value=7.2e-07 Score=79.39 Aligned_cols=80 Identities=21% Similarity=0.297 Sum_probs=65.0
Q ss_pred CHHHHHHHHHcCCCEEEEecCCCCcccCCCCchhhhHHHHHHHhCCCCCcEEeecCcCCHHHHHHHHHcCcceeeecccc
Q 020013 119 SFDEARKAVNAGVDAIIVQGREAGGHVIGQDGLISLLPMVVDLIGDRDIPIIAAGGIVDARGYVAALSLGAQGICLGTRF 198 (332)
Q Consensus 119 s~~~a~~a~~~g~D~ivv~G~eaGGh~~~~~~~~~ll~~i~~~~~~~~iPviaaGGI~~~~~v~~al~~GA~gV~~GT~f 198 (332)
..+.++.+.+.|+|.|.+...+..+.. ....+.++.++++.+ ++||++.|||.+++++.+++..|||+|.+||.+
T Consensus 37 ~~~~a~~~~~~G~~~i~v~d~~~~~~~--~~~~~~~i~~i~~~~---~ipvi~~Ggi~~~~~~~~~l~~Gad~V~ig~~~ 111 (247)
T 3tdn_A 37 LRDWVVEVEKRGAGEILLTSIDRDGTK--SGYDTEMIRFVRPLT---TLPIIASGGAGKMEHFLEAFLRGADKVSINTAA 111 (247)
T ss_dssp HHHHHHHHHHTTCSEEEEEETTTTTCS--SCCCHHHHHHHGGGC---CSCEEEESCCCSHHHHHHHHHTTCSEECCSHHH
T ss_pred HHHHHHHHHHcCCCEEEEEecCcccCC--CcccHHHHHHHHHhC---CCCEEEeCCCCCHHHHHHHHHcCCCeeehhhHH
Confidence 356778888999999998766544322 123467888888776 799999999999999999999999999999999
Q ss_pred ccCcc
Q 020013 199 VASEE 203 (332)
Q Consensus 199 l~t~E 203 (332)
+..++
T Consensus 112 l~dp~ 116 (247)
T 3tdn_A 112 VENPS 116 (247)
T ss_dssp HHCTH
T ss_pred hhChH
Confidence 96654
|
| >3vzx_A Heptaprenylglyceryl phosphate synthase; biosynthesis, prenyltransferases, enzyme catalysis, transfer; 1.54A {Bacillus subtilis} PDB: 3vzy_A* 3vzz_A* 3w00_A* 1viz_A | Back alignment and structure |
|---|
Probab=98.34 E-value=3.9e-06 Score=73.49 Aligned_cols=172 Identities=13% Similarity=0.117 Sum_probs=109.1
Q ss_pred ccceecCCCCCCCCcHHHHHHHHhCCCceeecCCCC-CCHHHHHHHHHHHHhhcCCcEEEEeecCCCCHHHHHHHHhcCC
Q 020013 10 EYGIVQAPLGPDISGPELVAAVANAGGLGLLRAPDW-EAPDYLRDLIRKTRSLTERPFGVGVVLAFPHNENIKAILSEKV 88 (332)
Q Consensus 10 ~~Pii~apM~~g~s~~~la~avs~aGglG~i~~~~~-~~~e~~~~~i~~~r~~~~~p~gvnl~~~~~~~~~~~~~~~~~~ 88 (332)
+|=...+|=- ..+.+.+.+++++|.=.++-.++. .+.+.+.+.++++|+ ++.|+-. +...+ +.+ ..++
T Consensus 8 ~h~~~iDPdk--~~~~~~~~~~~~~GtD~i~vGGs~gvt~~~~~~~v~~ik~-~~~Pvvl--fp~~~--~~v----~~ga 76 (228)
T 3vzx_A 8 KHVFKLDPNK--DLPDEQLEILCESGTDAVIIGGSDGVTEDNVLRMMSKVRR-FLVPCVL--EVSAI--EAI----VPGF 76 (228)
T ss_dssp CEEEEECTTS--CCCTTHHHHHHTSSCSEEEECCCSCCCHHHHHHHHHHHTT-SSSCEEE--ECSCG--GGC----CSCC
T ss_pred eEEEeECCCC--CCCHHHHHHHHHcCCCEEEECCcCCCCHHHHHHHHHHhhc-cCCCEEE--eCCCH--HHc----cccC
Confidence 3445556643 334456666777775444433222 578889999999998 7788654 33222 221 3588
Q ss_pred cEEEEc---cCCCcHHHH-----HHHHhCCC-----EEEEe----cC---------------CHHHHH----HHHHcCCC
Q 020013 89 AVLQVS---WGEYSEELV-----LEAHSAGV-----KVVPQ----VG---------------SFDEAR----KAVNAGVD 132 (332)
Q Consensus 89 ~~I~~~---~g~~~~~~i-----~~~~~~g~-----~v~~~----v~---------------s~~~a~----~a~~~g~D 132 (332)
|.+.+. .+. .++++ +.+++.|. .+++. +. +++++. .+.-.|.+
T Consensus 77 D~~l~pslln~~-~~~~i~g~~~~a~~~~g~~~~~~e~i~~gYivv~p~s~~~~~~~a~~~~~~e~~~~~a~~a~~~g~~ 155 (228)
T 3vzx_A 77 DLYFIPSVLNSK-NADWIVGMHQKAMKEYGELMSMEEIVAEGYCIANPDCKAAALTEADADLNMDDIVAYARVSELLQLP 155 (228)
T ss_dssp SEEEEEEETTBS-SGGGTTHHHHHHHHHHHHHHHHSCEEEEEEEECCSSSHHHHHTTBCCCCCHHHHHHHHHHHHHTTCS
T ss_pred CEEEEeeecCCC-CcchhhhHHHHHHHHcCCCCcccceeeeEEEEECCCCcceeeecccCCCCHHHHHHHHHHHHHcCCC
Confidence 888764 122 22333 55666664 44442 11 223332 23345789
Q ss_pred EEEEecCCCCcccCCCCchhhhHHHHHHHhCCCCCcEEeecCcCCHHHHHHHHHcCcceeeeccccccCcc
Q 020013 133 AIIVQGREAGGHVIGQDGLISLLPMVVDLIGDRDIPIIAAGGIVDARGYVAALSLGAQGICLGTRFVASEE 203 (332)
Q Consensus 133 ~ivv~G~eaGGh~~~~~~~~~ll~~i~~~~~~~~iPviaaGGI~~~~~v~~al~~GA~gV~~GT~fl~t~E 203 (332)
.|-+++ .| .. + ...++.++++... ++|+++.|||++++++.+++ .|||+|++||++...+|
T Consensus 156 ~VYld~--sG-~~-~---~~~~i~~i~~~~~--~~Pv~vGGGI~t~e~a~~~~-~gAD~VVVGSa~v~~p~ 216 (228)
T 3vzx_A 156 IFYLEY--SG-VL-G---DIEAVKKTKAVLE--TSTLFYGGGIKDAETAKQYA-EHADVIVVGNAVYEDFD 216 (228)
T ss_dssp EEEEEC--TT-SC-C---CHHHHHHHHHHCS--SSEEEEESSCCSHHHHHHHH-TTCSEEEECTHHHHCHH
T ss_pred EEEecC--CC-Cc-C---CHHHHHHHHHhcC--CCCEEEeCCCCCHHHHHHHH-hCCCEEEEChHHhcCHH
Confidence 998877 23 22 2 4778888888762 58999999999999999988 69999999999987543
|
| >3l5l_A Xenobiotic reductase A; TIM barrel, oxidoreductase; HET: BU3 FMN; 1.03A {Pseudomonas putida} SCOP: c.1.4.0 PDB: 3l5m_A* 3n19_B* 3n16_A* 3l68_A* 3l67_A* 3l65_A* 3l66_A* 3n14_A* 2h8z_A* 2h90_A* 2h8x_A* | Back alignment and structure |
|---|
Probab=98.33 E-value=4.6e-06 Score=78.48 Aligned_cols=120 Identities=15% Similarity=0.163 Sum_probs=82.3
Q ss_pred HHHHhcCCcEEEEccCC---------C-------------------cHHHHHHHHhC---CCEEEEecC----------C
Q 020013 81 KAILSEKVAVLQVSWGE---------Y-------------------SEELVLEAHSA---GVKVVPQVG----------S 119 (332)
Q Consensus 81 ~~~~~~~~~~I~~~~g~---------~-------------------~~~~i~~~~~~---g~~v~~~v~----------s 119 (332)
+.+.++|.|.|.+|.+. + ..++++.+++. +.+|...++ +
T Consensus 165 ~~a~~aGfDgVEih~a~GyLl~qFlsp~~N~R~D~yGGslenR~r~~~eiv~aVr~avg~d~pV~vRis~~~~~~~G~~~ 244 (363)
T 3l5l_A 165 RRARDAGFEWIELHFAHGYLGQSFFSEHSNKRTDAYGGSFDNRSRFLLETLAAVREVWPENLPLTARFGVLEYDGRDEQT 244 (363)
T ss_dssp HHHHHHTCSEEEEEECTTSHHHHHHCTTTCCCCSTTSSSHHHHHHHHHHHHHHHHTTSCTTSCEEEEEEEECSSSCHHHH
T ss_pred HHHHHcCCCEEEEccccchHHHHccCCCcCCCCcccCcCHHHHHHHHHHHHHHHHHHcCCCceEEEEecchhcCCCCCCC
Confidence 34567899999998532 1 12455566653 345655432 2
Q ss_pred HHH----HHHHHHcCCCEEEEecCCCCccc---CCCCchhhhHHHHHHHhCCCCCcEEeecCcCCHHHHHHHHHcC-cce
Q 020013 120 FDE----ARKAVNAGVDAIIVQGREAGGHV---IGQDGLISLLPMVVDLIGDRDIPIIAAGGIVDARGYVAALSLG-AQG 191 (332)
Q Consensus 120 ~~~----a~~a~~~g~D~ivv~G~eaGGh~---~~~~~~~~ll~~i~~~~~~~~iPviaaGGI~~~~~v~~al~~G-A~g 191 (332)
.++ ++.+.+.|+|+|-+.+....... .++...+.++..+++.+ ++||++.|||.+++++.+++..| ||.
T Consensus 245 ~~~~~~la~~L~~~Gvd~i~vs~g~~~~~~~~~~~~~~~~~~~~~ir~~~---~iPVi~~GgI~s~e~a~~~l~~G~aD~ 321 (363)
T 3l5l_A 245 LEESIELARRFKAGGLDLLSVSVGFTIPDTNIPWGPAFMGPIAERVRREA---KLPVTSAWGFGTPQLAEAALQANQLDL 321 (363)
T ss_dssp HHHHHHHHHHHHHTTCCEEEEEECCCSSCCCCCCCTTTTHHHHHHHHHHH---TCCEEECSSTTSHHHHHHHHHTTSCSE
T ss_pred HHHHHHHHHHHHHcCCCEEEEecCccccccccCCCcchhHHHHHHHHHHc---CCcEEEeCCCCCHHHHHHHHHCCCccE
Confidence 233 45667889999998652111110 01212356778888887 79999999999999999999999 999
Q ss_pred eeeccccccCcc
Q 020013 192 ICLGTRFVASEE 203 (332)
Q Consensus 192 V~~GT~fl~t~E 203 (332)
|.+|+.|+..++
T Consensus 322 V~iGR~~lanPd 333 (363)
T 3l5l_A 322 VSVGRAHLADPH 333 (363)
T ss_dssp EECCHHHHHCTT
T ss_pred EEecHHHHhCch
Confidence 999999998644
|
| >2czd_A Orotidine 5'-phosphate decarboxylase; pyrimidine biosynthesis, orotidine 5'-phosphate decarboxylas (ompdecase), structural genomics; 1.60A {Pyrococcus horikoshii} SCOP: c.1.2.3 PDB: 2cz5_A 2cze_A* 2czf_A* | Back alignment and structure |
|---|
Probab=98.31 E-value=2.2e-06 Score=74.33 Aligned_cols=132 Identities=15% Similarity=0.076 Sum_probs=88.7
Q ss_pred HHHHHhh--cCCcEEEEee--cCCCCHHHHHHHHhcCCcEEEEccCCCcHHHHHHHHhC-CCEEEEecCCHH--------
Q 020013 55 IRKTRSL--TERPFGVGVV--LAFPHNENIKAILSEKVAVLQVSWGEYSEELVLEAHSA-GVKVVPQVGSFD-------- 121 (332)
Q Consensus 55 i~~~r~~--~~~p~gvnl~--~~~~~~~~~~~~~~~~~~~I~~~~g~~~~~~i~~~~~~-g~~v~~~v~s~~-------- 121 (332)
++.+|+. +..++-+.++ .+.+ ..+++.+.+.|+|+|.+|... ..+.++.+++. |+.+.+..+...
T Consensus 43 i~~lr~~~~~~v~~D~kl~DI~~t~-~~~v~~~~~~Gad~vtvh~~~-g~~~i~~~~~~~gv~vl~~t~~~~~~~~~~~~ 120 (208)
T 2czd_A 43 IRRLKEETGVEIIADLKLADIPNTN-RLIARKVFGAGADYVIVHTFV-GRDSVMAVKELGEIIMVVEMSHPGALEFINPL 120 (208)
T ss_dssp HHHHHHHHCCEEEEEEEECSCHHHH-HHHHHHHHHTTCSEEEEESTT-CHHHHHHHHTTSEEEEECCCCSGGGGTTTGGG
T ss_pred HHHHHHcCCCEEEEEeeeCchHHHH-HHHHHHHHhcCCCEEEEeccC-CHHHHHHHHHhCCcEEEEecCCcchhhHHHHH
Confidence 3445554 3445566666 4443 566788889999999999533 45668888877 555555533211
Q ss_pred ---HHHHHHHcCCCEEEEecCCCCcccCCCCchhhhHHHHHHHhCCCCCcEEeecCcCCHH--HHHHHHHcCcceeeecc
Q 020013 122 ---EARKAVNAGVDAIIVQGREAGGHVIGQDGLISLLPMVVDLIGDRDIPIIAAGGIVDAR--GYVAALSLGAQGICLGT 196 (332)
Q Consensus 122 ---~a~~a~~~g~D~ivv~G~eaGGh~~~~~~~~~ll~~i~~~~~~~~iPviaaGGI~~~~--~v~~al~~GA~gV~~GT 196 (332)
-++.+.+.|+|++++.. +. ..-++++++..+ ..+++++|||. .+ ++.+++++||+.+++|+
T Consensus 121 v~~~~~~a~~~G~~G~~~~~-----~~------~~~i~~lr~~~~--~~~~iv~gGI~-~~g~~~~~~~~aGad~vvvGr 186 (208)
T 2czd_A 121 TDRFIEVANEIEPFGVIAPG-----TR------PERIGYIRDRLK--EGIKILAPGIG-AQGGKAKDAVKAGADYIIVGR 186 (208)
T ss_dssp HHHHHHHHHHHCCSEEECCC-----SS------THHHHHHHHHSC--TTCEEEECCCC-SSTTHHHHHHHHTCSEEEECH
T ss_pred HHHHHHHHHHhCCcEEEECC-----CC------hHHHHHHHHhCC--CCeEEEECCCC-CCCCCHHHHHHcCCCEEEECh
Confidence 14456788999987732 11 233456666552 23577999995 45 89999999999999999
Q ss_pred ccccCc
Q 020013 197 RFVASE 202 (332)
Q Consensus 197 ~fl~t~ 202 (332)
.++.++
T Consensus 187 ~I~~a~ 192 (208)
T 2czd_A 187 AIYNAP 192 (208)
T ss_dssp HHHTSS
T ss_pred HHhcCC
Confidence 988763
|
| >2agk_A 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino) methylideneamino] imidazole-4-carboxamide...; TIM alpha/beta barrel; HET: CIT; 1.30A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.31 E-value=4.6e-06 Score=74.88 Aligned_cols=164 Identities=14% Similarity=0.086 Sum_probs=96.8
Q ss_pred CcH-HHHHHHHhCCCceeec--CCCCCCHHHHHHHHHHHHhhcCCcEEEEeecCCCCHHHHHHHHhcCCcEEEEccC--C
Q 020013 23 SGP-ELVAAVANAGGLGLLR--APDWEAPDYLRDLIRKTRSLTERPFGVGVVLAFPHNENIKAILSEKVAVLQVSWG--E 97 (332)
Q Consensus 23 s~~-~la~avs~aGglG~i~--~~~~~~~e~~~~~i~~~r~~~~~p~gvnl~~~~~~~~~~~~~~~~~~~~I~~~~g--~ 97 (332)
.+| ++|.+..+.|.-++.. ... .+.+. ++++.+....|+-++=-+. .. .++.++ .|++-|.++.. .
T Consensus 38 ~dp~~~A~~~~~~Ga~~l~vvDL~~-~n~~~----i~~i~~~~~~pv~vgGGir--~~-~~~~~l-~Ga~~Viigs~a~~ 108 (260)
T 2agk_A 38 HPSSYYAKLYKDRDVQGCHVIKLGP-NNDDA----AREALQESPQFLQVGGGIN--DT-NCLEWL-KWASKVIVTSWLFT 108 (260)
T ss_dssp CCHHHHHHHHHHTTCTTCEEEEESS-SCHHH----HHHHHHHSTTTSEEESSCC--TT-THHHHT-TTCSCEEECGGGBC
T ss_pred CCHHHHHHHHHHcCCCEEEEEeCCC-CCHHH----HHHHHhcCCceEEEeCCCC--HH-HHHHHh-cCCCEEEECcHHHh
Confidence 355 5666666666433222 111 23333 4455444556665532222 23 566667 89998877521 1
Q ss_pred C----cHHHHHHH-HhCC---CEEEEec---------------------CCH-HHHHHHHHcCCCEEEEecCCCCcccCC
Q 020013 98 Y----SEELVLEA-HSAG---VKVVPQV---------------------GSF-DEARKAVNAGVDAIIVQGREAGGHVIG 147 (332)
Q Consensus 98 ~----~~~~i~~~-~~~g---~~v~~~v---------------------~s~-~~a~~a~~~g~D~ivv~G~eaGGh~~~ 147 (332)
. ++++++.+ +..+ +.+...+ .-. +-++.+.+. ++.|++.+...-|...|
T Consensus 109 ~~g~~~p~~~~~~~~~~g~~~ivv~iD~k~~~~~g~~V~~~gw~~~t~~~~~~e~a~~~~~~-a~~il~t~i~~dG~~~G 187 (260)
T 2agk_A 109 KEGHFQLKRLERLTELCGKDRIVVDLSCRKTQDGRWIVAMNKWQTLTDLELNADTFRELRKY-TNEFLIHAADVEGLCGG 187 (260)
T ss_dssp TTCCBCHHHHHHHHHHHCGGGEEEEEEEEEEETTEEEEEETTTTEEEEEEESHHHHHHHTTT-CSEEEEEC-------CC
T ss_pred hcCCCCHHHHHHHHHHhCcCcEEEEEEeeecCCCceEEEEcCCccccCccHHHHHHHHHHHh-cCEEEEEeeccccCcCC
Confidence 1 14444443 2222 1111111 114 667788888 99999988765443223
Q ss_pred CCchhhhHHHHHHHhC-CCCCcEEeecCcCCHHHHHHHHHc--Ccceeeecccc
Q 020013 148 QDGLISLLPMVVDLIG-DRDIPIIAAGGIVDARGYVAALSL--GAQGICLGTRF 198 (332)
Q Consensus 148 ~~~~~~ll~~i~~~~~-~~~iPviaaGGI~~~~~v~~al~~--GA~gV~~GT~f 198 (332)
..+.++.++.+.++ ..++|||++|||++.+++.+++.+ |+++|++|++|
T Consensus 188 --~d~eli~~l~~~~~~~~~iPVIasGGi~s~ed~~~l~~~~~G~~gvivg~al 239 (260)
T 2agk_A 188 --IDELLVSKLFEWTKDYDDLKIVYAGGAKSVDDLKLVDELSHGKVDLTFGSSL 239 (260)
T ss_dssp --CCHHHHHHHHHHHTTCSSCEEEEESCCCCTHHHHHHHHHHTTCEEEECCTTB
T ss_pred --CCHHHHHHHHHhhcccCCceEEEeCCCCCHHHHHHHHHhcCCCCEEEeeCCH
Confidence 35889999988761 004899999999999999999998 99999999998
|
| >1hg3_A Triosephosphate isomerase; thermostability, tetrameric; 2.7A {Pyrococcus woesei} SCOP: c.1.1.1 | Back alignment and structure |
|---|
Probab=98.28 E-value=1.8e-05 Score=69.30 Aligned_cols=123 Identities=15% Similarity=0.183 Sum_probs=87.5
Q ss_pred HHHHHhcCCcEEEEccCC--C----cHHHHHHHHhCCCEEEEecCCHHHHHHHHHcCCCEEEEecCCCCccc----CCCC
Q 020013 80 IKAILSEKVAVLQVSWGE--Y----SEELVLEAHSAGVKVVPQVGSFDEARKAVNAGVDAIIVQGREAGGHV----IGQD 149 (332)
Q Consensus 80 ~~~~~~~~~~~I~~~~g~--~----~~~~i~~~~~~g~~v~~~v~s~~~a~~a~~~g~D~ivv~G~eaGGh~----~~~~ 149 (332)
+..+.+.|+++|.+.... . ..+.++..++.|+.++..|++.++...+...+++.|-+++..+-|.. ....
T Consensus 81 ~~~l~~~Ga~~VllghseRR~~~~e~~~k~~~A~~~GL~~ivcVge~~e~~~~~~~~~~iIayep~waiGtG~~v~t~~~ 160 (225)
T 1hg3_A 81 PEAVKEAGAVGTLLNHSENRMILADLEAAIRRAEEVGLMTMVCSNNPAVSAAVAALNPDYVAVEPPELIGTGIPVSKAKP 160 (225)
T ss_dssp HHHHHHTTCCEEEESCGGGCCBHHHHHHHHHHHHHHTCEEEEEESSHHHHHHHHTTCCSEEEECCTTTTTTSCCTTTSCT
T ss_pred HHHHHHcCCCEEEECcchhcCCHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHhcCCCCEEEEeChhhhccCCCCCCCCh
Confidence 677889999999886332 1 22345566778999999999998888888888998888887765532 1111
Q ss_pred chhhhHHHHHHHhCCCCCcEEeecCcCCHHHHHHHHHcCcceeeeccccccCcc
Q 020013 150 GLISLLPMVVDLIGDRDIPIIAAGGIVDARGYVAALSLGAQGICLGTRFVASEE 203 (332)
Q Consensus 150 ~~~~ll~~i~~~~~~~~iPviaaGGI~~~~~v~~al~~GA~gV~~GT~fl~t~E 203 (332)
....-..+..+... .+++++..|||.+..++..+...|+||+.+|+++|.+++
T Consensus 161 d~~~~~~~~ir~~~-~~~~ilyggsV~~~n~~~~~~~~~vDG~LVG~a~l~a~~ 213 (225)
T 1hg3_A 161 EVITNTVELVKKVN-PEVKVLCGAGISTGEDVKKAIELGTVGVLLASGVTKAKD 213 (225)
T ss_dssp HHHHHHHHHHHHHC-TTSEEEEESSCCSHHHHHHHHHTTCSEEEESHHHHTCSS
T ss_pred hHHHHHHHHHHhcc-CCCEEEEeCCCCcHHHHHHHHhCCCCEEEeCHHHHCCcC
Confidence 11122222222222 268999999998888888888899999999999997643
|
| >1w8s_A FBP aldolase, fructose-bisphosphate aldolase class I; TIM barrel, glycolytic, archaeal, catalytic mechanism, reaction intermediate, lyase; HET: FBP; 1.85A {Thermoproteus tenax} SCOP: c.1.10.1 PDB: 1w8r_A* 2yce_A* 1ojx_A 1ok4_A 1ok6_A | Back alignment and structure |
|---|
Probab=98.27 E-value=9.6e-06 Score=72.90 Aligned_cols=113 Identities=19% Similarity=0.312 Sum_probs=77.7
Q ss_pred HHHHHHhcCCcEEEEcc--CCCcH--------HHHHHHHhCCCEEEEecC----------CHHH----HHHHHHcCCCEE
Q 020013 79 NIKAILSEKVAVLQVSW--GEYSE--------ELVLEAHSAGVKVVPQVG----------SFDE----ARKAVNAGVDAI 134 (332)
Q Consensus 79 ~~~~~~~~~~~~I~~~~--g~~~~--------~~i~~~~~~g~~v~~~v~----------s~~~----a~~a~~~g~D~i 134 (332)
.++.+++.|++.|++.. |.... ++.+.+++.+++++..+. +.++ ++.+.+.|+|+|
T Consensus 97 ~ve~Ai~~Ga~~v~~~~nig~~~~~~~~~~~~~v~~~~~~~~~~vIi~~~~~G~~~~~~~s~~~i~~a~~~a~~~GAD~v 176 (263)
T 1w8s_A 97 SVEEAVSLGASAVGYTIYPGSGFEWKMFEELARIKRDAVKFDLPLVVESFPRGGKVVNETAPEIVAYAARIALELGADAM 176 (263)
T ss_dssp CHHHHHHTTCSEEEEEECTTSTTHHHHHHHHHHHHHHHHHHTCCEEEEECCCSTTCCCTTCHHHHHHHHHHHHHHTCSEE
T ss_pred HHHHHHHCCCCEEEEEEecCCcCHHHHHHHHHHHHHHHHHcCCeEEEEeeCCCCccccCCCHHHHHHHHHHHHHcCCCEE
Confidence 46778899999998864 54322 122334456888776542 3333 345678999999
Q ss_pred EEecCCCCcccCCCCchhhhHHHHHHHhCCCCCcEEeecCcC--CHHHHHHHH----HcCcceeeeccccccCcc
Q 020013 135 IVQGREAGGHVIGQDGLISLLPMVVDLIGDRDIPIIAAGGIV--DARGYVAAL----SLGAQGICLGTRFVASEE 203 (332)
Q Consensus 135 vv~G~eaGGh~~~~~~~~~ll~~i~~~~~~~~iPviaaGGI~--~~~~v~~al----~~GA~gV~~GT~fl~t~E 203 (332)
.+. + . .....++.+++... .+||+++|||. +.+++.+.+ .+||+|+.+|+.++..+.
T Consensus 177 kt~-~-----~----~~~e~~~~~~~~~~--~~pV~asGGi~~~~~~~~l~~i~~~~~aGA~GvsvgraI~~~~d 239 (263)
T 1w8s_A 177 KIK-Y-----T----GDPKTFSWAVKVAG--KVPVLMSGGPKTKTEEDFLKQVEGVLEAGALGIAVGRNVWQRRD 239 (263)
T ss_dssp EEE-C-----C----SSHHHHHHHHHHTT--TSCEEEECCSCCSSHHHHHHHHHHHHHTTCCEEEESHHHHTSTT
T ss_pred EEc-C-----C----CCHHHHHHHHHhCC--CCeEEEEeCCCCCCHHHHHHHHHHHHHcCCeEEEEehhhcCCcC
Confidence 884 2 1 13566777777662 34999999998 666655444 899999999999987753
|
| >3w01_A Heptaprenylglyceryl phosphate synthase; biosynthesis, prenyltransferases, enzyme catalysis, transfer; HET: PGE; 1.54A {Staphylococcus aureus} PDB: 3w02_A | Back alignment and structure |
|---|
Probab=98.25 E-value=2.1e-05 Score=69.06 Aligned_cols=172 Identities=13% Similarity=0.119 Sum_probs=108.2
Q ss_pred CccceecCCCCCCCCcHHHHHHHHhCCCceeecCC-CCCCHHHHHHHHHHHHhhcCCcEEEEeecCCCCHHHHHHHHhcC
Q 020013 9 FEYGIVQAPLGPDISGPELVAAVANAGGLGLLRAP-DWEAPDYLRDLIRKTRSLTERPFGVGVVLAFPHNENIKAILSEK 87 (332)
Q Consensus 9 ~~~Pii~apM~~g~s~~~la~avs~aGglG~i~~~-~~~~~e~~~~~i~~~r~~~~~p~gvnl~~~~~~~~~~~~~~~~~ 87 (332)
.+|=...+|=- ..+.+.+.+++++|.=.++-.+ ...+.+.+.+.++++|+ ++.|+.+ +...+ +.+ ..+
T Consensus 12 w~h~~~~DPdk--~~~~~~l~~~~~~GtDaI~vGgs~gvt~~~~~~~v~~ik~-~~~Piil--~p~~~--~~~----~~g 80 (235)
T 3w01_A 12 WRHIFKLDPAK--HISDDDLDAICMSQTDAIMIGGTDDVTEDNVIHLMSKIRR-YPLPLVL--EISNI--ESV----MPG 80 (235)
T ss_dssp CCEEEEECTTS--CCCHHHHHHHHTSSCSEEEECCSSCCCHHHHHHHHHHHTT-SCSCEEE--ECCCS--TTC----CTT
T ss_pred ceEEEeECCCC--cCCHHHHHHHHHcCCCEEEECCcCCcCHHHHHHHHHHhcC-cCCCEEE--ecCCH--HHh----hcC
Confidence 35656667742 3456666677777743333222 22578899999999998 7888765 33222 111 348
Q ss_pred CcEEEEc---cCCCcH----HHHHHHHhCCC-----EEEEe----cC---------------CHHHHHHHH-----HcCC
Q 020013 88 VAVLQVS---WGEYSE----ELVLEAHSAGV-----KVVPQ----VG---------------SFDEARKAV-----NAGV 131 (332)
Q Consensus 88 ~~~I~~~---~g~~~~----~~i~~~~~~g~-----~v~~~----v~---------------s~~~a~~a~-----~~g~ 131 (332)
+|.+.+. .+..+. ...+.+++.|. .++.. +. +++++.... -.|-
T Consensus 81 aD~il~pslln~~~~~~i~g~~~~a~~~~gl~~~~~e~i~~gYivv~p~s~v~~v~~a~~~~~~e~iaa~A~~a~~~~g~ 160 (235)
T 3w01_A 81 FDFYFVPTVLNSTDVAFHNGTLLEALKTYGHSIDFEEVIFEGYVVCNADSKVAKHTKANTDLTTEDLEAYAQMVNHMYRL 160 (235)
T ss_dssp CSEEEEEEETTBSSGGGTTHHHHHHHHHHGGGCCGGGEEEEEEEECCSSSHHHHHTTBCCCCCHHHHHHHHHHHHHTTCC
T ss_pred CCEEEEccccCCCCcchhhhHHHHHHHHcCCCCcccceeeeeEEEECCCCChhhcccCCcCCCHHHHHHHHHHHHHHcCC
Confidence 8888764 122222 12455677776 55542 21 233322211 1377
Q ss_pred CEEEEecCCCCcccCCCCchhhhHHHHHHHhCCCCCcEEeecCcCCHHHHHHHHHcCcceeeeccccccC
Q 020013 132 DAIIVQGREAGGHVIGQDGLISLLPMVVDLIGDRDIPIIAAGGIVDARGYVAALSLGAQGICLGTRFVAS 201 (332)
Q Consensus 132 D~ivv~G~eaGGh~~~~~~~~~ll~~i~~~~~~~~iPviaaGGI~~~~~v~~al~~GA~gV~~GT~fl~t 201 (332)
.+|-++. .|- . + ...++.++++... ++|++..|||++++++.++.. |||+|++||+|...
T Consensus 161 ~~vY~e~--sG~-~-g---~~~~v~~ir~~~~--~~pv~vGfGI~~~e~a~~~~~-gAD~VVVGSai~~~ 220 (235)
T 3w01_A 161 PVMYIEY--SGI-Y-G---DVSKVQAVSEHLT--ETQLFYGGGISSEQQATEMAA-IADTIIVGDIIYKD 220 (235)
T ss_dssp SEEEEEC--TTS-C-C---CHHHHHHHHTTCS--SSEEEEESCCCSHHHHHHHHT-TSSEEEECTHHHHC
T ss_pred CEEEEec--CCC-c-C---CHHHHHHHHHhcC--CCCEEEECCcCCHHHHHHHHc-CCCEEEECCceecC
Confidence 7887765 232 2 2 3677888877542 689999999999999998887 99999999999974
|
| >1w0m_A TIM, triosephosphate isomerase; glycolysis, gluconeogenesis; 2.5A {Thermoproteus tenax} SCOP: c.1.1.1 | Back alignment and structure |
|---|
Probab=98.23 E-value=1.6e-05 Score=69.62 Aligned_cols=122 Identities=22% Similarity=0.219 Sum_probs=87.6
Q ss_pred HHHHHhcCCcEEEEccCC--C----cHHHHHHHHhCCCEEEEecCCHHHHHHHHHcCCCEEEEecCCCCcccCCC--Cch
Q 020013 80 IKAILSEKVAVLQVSWGE--Y----SEELVLEAHSAGVKVVPQVGSFDEARKAVNAGVDAIIVQGREAGGHVIGQ--DGL 151 (332)
Q Consensus 80 ~~~~~~~~~~~I~~~~g~--~----~~~~i~~~~~~g~~v~~~v~s~~~a~~a~~~g~D~ivv~G~eaGGh~~~~--~~~ 151 (332)
+..+.+.|+++|.+.... . ..+.++.+++.|+.++..|++..+...+...+++.|-+++..+-|.. .+ ..+
T Consensus 78 ~~~l~~~Ga~~VllghseRR~~~~e~~~k~~~A~~~GL~~ivcVge~~e~~~~~~~~~~iIayep~waiGtG-~~v~t~~ 156 (226)
T 1w0m_A 78 LENIKEAGGSGVILNHSEAPLKLNDLARLVAKAKSLGLDVVVCAPDPRTSLAAAALGPHAVAVEPPELIGTG-RAVSRYK 156 (226)
T ss_dssp HHHHHHHTCCEEEECCTTSCCBHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHTCCSEEEECCGGGTTTS-CCHHHHC
T ss_pred HHHHHHcCCCEEEEeeeeccCCHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHhcCCCCEEEEcChhhhccC-CCCCCCC
Confidence 677888999999886433 1 22445566788999999999998888888889998888877665532 11 111
Q ss_pred hhhHH---HHHHHhCCCCCcEEeecCcCCHHHHHHHHHcCcceeeeccccccCcc
Q 020013 152 ISLLP---MVVDLIGDRDIPIIAAGGIVDARGYVAALSLGAQGICLGTRFVASEE 203 (332)
Q Consensus 152 ~~ll~---~i~~~~~~~~iPviaaGGI~~~~~v~~al~~GA~gV~~GT~fl~t~E 203 (332)
...+. ++.+... .+++++..|||.+..++..+...|+||+.+|+++|.+++
T Consensus 157 ~d~~~~~~~~ir~~~-~~~~ilyggsV~~~n~~~~~~~~giDG~LVG~a~l~a~~ 210 (226)
T 1w0m_A 157 PEAIVETVGLVSRHF-PEVSVITGAGIESGDDVAAALRLGTRGVLLASAAVKAKD 210 (226)
T ss_dssp HHHHHHHHHHHHHHC-TTSEEEEESSCCSHHHHHHHHHTTCSEEEECHHHHTCSS
T ss_pred hhHHHHHHHHHHhcc-CCCEEEEeCCCCcHHHHHHHHhCCCCEEEECHHHHCCcC
Confidence 11122 2222222 268999999998888888888899999999999997743
|
| >1o94_A Tmadh, trimethylamine dehydrogenase; electron transport, protein complex; HET: FMN ADP AMP; 2.0A {Methylophilus methylotrophus} SCOP: c.1.4.1 c.3.1.1 c.4.1.1 PDB: 1djn_A* 1o95_A* 2tmd_A* 1djq_A* | Back alignment and structure |
|---|
Probab=98.21 E-value=4.7e-05 Score=78.06 Aligned_cols=120 Identities=14% Similarity=0.096 Sum_probs=78.1
Q ss_pred HHHHhcCCcEEEEccCC---------C-------------------cHHHHHHHHhC---CCEEEEecC----------C
Q 020013 81 KAILSEKVAVLQVSWGE---------Y-------------------SEELVLEAHSA---GVKVVPQVG----------S 119 (332)
Q Consensus 81 ~~~~~~~~~~I~~~~g~---------~-------------------~~~~i~~~~~~---g~~v~~~v~----------s 119 (332)
+.+.++|.|.|.+|.++ + +.++++.+++. +.+|+..++ +
T Consensus 156 ~~a~~aGfDgVEih~a~gyLl~qFlsp~~N~R~D~yGGs~enR~r~~~eiv~avr~~vg~~~pv~vrls~~~~~~~~G~~ 235 (729)
T 1o94_A 156 KRSRDAGFDIVYVYGAHSYLPLQFLNPYYNKRTDKYGGSLENRARFWLETLEKVKHAVGSDCAIATRFGVDTVYGPGQIE 235 (729)
T ss_dssp HHHHHTTCSEEEEEECTTCHHHHHHCTTTCCCCSTTSSSHHHHTHHHHHHHHHHHHHHTTTSEEEEEEEEECSSCTTSCC
T ss_pred HHHHHcCCCEEEEccccchHHHHhcCCccCCCcCcCCCCHHHHhHHHHHHHHHHHHHhCCCceEEEEEccccCcCCCCCC
Confidence 34567899999998544 1 22455666552 566664432 1
Q ss_pred -HHH---HHHHHHcCCCEEEEecCC---CCcccCCC-----CchhhhHHHHHHHhCCCCCcEEeecCcCCHHHHHHHHHc
Q 020013 120 -FDE---ARKAVNAGVDAIIVQGRE---AGGHVIGQ-----DGLISLLPMVVDLIGDRDIPIIAAGGIVDARGYVAALSL 187 (332)
Q Consensus 120 -~~~---a~~a~~~g~D~ivv~G~e---aGGh~~~~-----~~~~~ll~~i~~~~~~~~iPviaaGGI~~~~~v~~al~~ 187 (332)
.++ ..+.++.++|++-+.+.. ..+..... ...+.++.++++.+ ++|||+.|||.+++++.++++.
T Consensus 236 ~~~~~~~~~~~l~~~~d~~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~---~~pvi~~G~i~~~~~a~~~l~~ 312 (729)
T 1o94_A 236 AEVDGQKFVEMADSLVDMWDITIGDIAEWGEDAGPSRFYQQGHTIPWVKLVKQVS---KKPVLGVGRYTDPEKMIEIVTK 312 (729)
T ss_dssp TTTHHHHHHHHHGGGCSEEEEEECCSTTGGGTSCCTTTCCTTTTHHHHHHHHTTC---SSCEECCSCCCCHHHHHHHHHT
T ss_pred chHHHHHHHHHHHhhcCEEEEeeecccccccccCCccccCccccHHHHHHHHHHC---CCEEEEeCCCCCHHHHHHHHHC
Confidence 222 223344479998775421 11111011 11255667777766 7999999999999999999999
Q ss_pred C-cceeeeccccccCcc
Q 020013 188 G-AQGICLGTRFVASEE 203 (332)
Q Consensus 188 G-A~gV~~GT~fl~t~E 203 (332)
| ||+|.+|+.|+..++
T Consensus 313 g~aD~V~~gR~~l~~P~ 329 (729)
T 1o94_A 313 GYADIIGCARPSIADPF 329 (729)
T ss_dssp TSCSBEEESHHHHHCTT
T ss_pred CCCCEEEeCchhhcCch
Confidence 8 999999999998754
|
| >3l5a_A NADH/flavin oxidoreductase/NADH oxidase; OLD yellow enzyme family, OYE-like FMN-binding domain, TIM B oxidoreductase; HET: PGE; 1.65A {Staphylococcus aureus} | Back alignment and structure |
|---|
Probab=98.20 E-value=2.9e-05 Score=74.34 Aligned_cols=79 Identities=18% Similarity=0.262 Sum_probs=58.0
Q ss_pred HHHHHH-cCCCEEEEecCCCCc--cc---CCCCchhhhHHHHHHHhCCCCCcEEeecCcCCHHHHHHHHHcCcceeeecc
Q 020013 123 ARKAVN-AGVDAIIVQGREAGG--HV---IGQDGLISLLPMVVDLIGDRDIPIIAAGGIVDARGYVAALSLGAQGICLGT 196 (332)
Q Consensus 123 a~~a~~-~g~D~ivv~G~eaGG--h~---~~~~~~~~ll~~i~~~~~~~~iPviaaGGI~~~~~v~~al~~GA~gV~~GT 196 (332)
++.+.+ .|+|+|-+.+..... .. .+....+.++..+++.++. ++|||+.|||.+++++.++++. ||.|.+|+
T Consensus 270 a~~L~~~~Gvd~I~vs~g~~~~~~~~~~~~g~~~~~~~a~~Ik~~v~~-~iPVI~~GgI~t~e~Ae~~L~~-aDlVaiGR 347 (419)
T 3l5a_A 270 IDWVMDVSNIQYLAIASWGRHIYQNTSRTPGDHFGRPVNQIVYEHLAG-RIPLIASGGINSPESALDALQH-ADMVGMSS 347 (419)
T ss_dssp HHHHHHHSCCCCEEECCTTCCGGGCBCCCSSTTTTSBHHHHHHHHHTT-SSCEEECSSCCSHHHHHHHGGG-CSEEEEST
T ss_pred HHHHHhhcCCcEEEEeeCCccccccccCCCCccccHHHHHHHHHHcCC-CCeEEEECCCCCHHHHHHHHHh-CCcHHHHH
Confidence 455677 899999997643200 10 0111234567777777632 5999999999999999999999 99999999
Q ss_pred ccccCcc
Q 020013 197 RFVASEE 203 (332)
Q Consensus 197 ~fl~t~E 203 (332)
.|+..++
T Consensus 348 ~~IanPd 354 (419)
T 3l5a_A 348 PFVTEPD 354 (419)
T ss_dssp HHHHCTT
T ss_pred HHHHCcH
Confidence 9997654
|
| >3gka_A N-ethylmaleimide reductase; decode biostructures, ssgcid, niaid, targetdb bupsa00093A, structural genomics; HET: FMN; 2.30A {Burkholderia pseudomallei} SCOP: c.1.4.0 | Back alignment and structure |
|---|
Probab=98.19 E-value=1.5e-05 Score=74.84 Aligned_cols=110 Identities=16% Similarity=0.160 Sum_probs=79.1
Q ss_pred HHHHhcCCcEEEEccCC---------C-------------------cHHHHHHHHhC-CC-EEEEecCC-----------
Q 020013 81 KAILSEKVAVLQVSWGE---------Y-------------------SEELVLEAHSA-GV-KVVPQVGS----------- 119 (332)
Q Consensus 81 ~~~~~~~~~~I~~~~g~---------~-------------------~~~~i~~~~~~-g~-~v~~~v~s----------- 119 (332)
+.+.++|.|.|.+|.++ + ..++++.+++. |. +|...++.
T Consensus 168 ~~A~~aGfDgVEih~a~GYLl~QFLsp~~N~RtD~yGGslenR~rf~~evv~aVr~~vg~~~v~vRls~~~~~~g~~~~~ 247 (361)
T 3gka_A 168 ENARAAGFDGVEVHGANGYLLDQFLQDSANRRTDAYGGSIENRARLLLEVVDAAIDVWSAARVGVHLAPRGDAHTMGDSD 247 (361)
T ss_dssp HHHHHTTCSEEEEECCTTSHHHHHHSTTTCCCCSTTSSSHHHHSHHHHHHHHHHHHHHCGGGEEEEECTTCCSSSCCCSC
T ss_pred HHHHHcCCCEEEECCcCccHHHhccCcccccccCCCCCChhhcHHHHHHHHHHHHHHcCCCeEEEecccccccCCCCCCC
Confidence 34567899999998653 1 12455666543 22 55544331
Q ss_pred -HH----HHHHHHHcCCCEEEEecCCCCcccCCCCchhhhHHHHHHHhCCCCCcEEeecCcCCHHHHHHHHHcC-cceee
Q 020013 120 -FD----EARKAVNAGVDAIIVQGREAGGHVIGQDGLISLLPMVVDLIGDRDIPIIAAGGIVDARGYVAALSLG-AQGIC 193 (332)
Q Consensus 120 -~~----~a~~a~~~g~D~ivv~G~eaGGh~~~~~~~~~ll~~i~~~~~~~~iPviaaGGI~~~~~v~~al~~G-A~gV~ 193 (332)
.+ -++.+.+.|+|+|-+.+... +. .++.++++.+ ++|||+.||| +++++.++++.| ||.|.
T Consensus 248 ~~~~~~~la~~l~~~Gvd~i~v~~~~~-----~~----~~~~~ik~~~---~iPvi~~Ggi-t~e~a~~~l~~G~aD~V~ 314 (361)
T 3gka_A 248 PAATFGHVARELGRRRIAFLFARESFG-----GD----AIGQQLKAAF---GGPFIVNENF-TLDSAQAALDAGQADAVA 314 (361)
T ss_dssp HHHHHHHHHHHHHHTTCSEEEEECCCS-----TT----CCHHHHHHHH---CSCEEEESSC-CHHHHHHHHHTTSCSEEE
T ss_pred cHHHHHHHHHHHHHcCCCEEEECCCCC-----CH----HHHHHHHHHc---CCCEEEeCCC-CHHHHHHHHHcCCccEEE
Confidence 22 34556788999999865421 11 4567888887 7999999999 999999999998 99999
Q ss_pred eccccccCcc
Q 020013 194 LGTRFVASEE 203 (332)
Q Consensus 194 ~GT~fl~t~E 203 (332)
+|+.|+..++
T Consensus 315 iGR~~ladPd 324 (361)
T 3gka_A 315 WGKLFIANPD 324 (361)
T ss_dssp ESHHHHHCTT
T ss_pred ECHHhHhCcH
Confidence 9999998764
|
| >3exr_A RMPD (hexulose-6-phosphate synthase); beta barrel, lyase; 1.70A {Streptococcus mutans} SCOP: c.1.2.3 PDB: 3exs_A* 3ext_A | Back alignment and structure |
|---|
Probab=98.16 E-value=1.3e-05 Score=70.17 Aligned_cols=144 Identities=14% Similarity=0.092 Sum_probs=88.0
Q ss_pred HHHHHhhc-CCcEEEEeecCCCCHHHHHHHHhcCCcEEEEccCCCcH---HHHHHHHhCC---CEEEEecC---CHHHHH
Q 020013 55 IRKTRSLT-ERPFGVGVVLAFPHNENIKAILSEKVAVLQVSWGEYSE---ELVLEAHSAG---VKVVPQVG---SFDEAR 124 (332)
Q Consensus 55 i~~~r~~~-~~p~gvnl~~~~~~~~~~~~~~~~~~~~I~~~~g~~~~---~~i~~~~~~g---~~v~~~v~---s~~~a~ 124 (332)
++++++.. +.++-..+-+.+..+...+.+.+.|+|.+.+|...... ..++.+++.| ..+...+. +.+.+.
T Consensus 49 v~~l~~~~p~~~iflDlKl~Dip~t~~~~~~~~Gad~vtVH~~~g~~~l~~a~~~~~~~g~~~~~~~Vt~lts~~~~~~~ 128 (221)
T 3exr_A 49 VEVLRSLFPDKIIVADTKCADAGGTVAKNNAVRGADWMTCICSATIPTMKAARKAIEDINPDKGEIQVELYGDWTYDQAQ 128 (221)
T ss_dssp HHHHHHHCTTSEEEEEEEECSCHHHHHHHHHTTTCSEEEEETTSCHHHHHHHHHHHHHHCTTTCEEEEECCSSCCHHHHH
T ss_pred HHHHHHhCCCCcEEEEEEeeccHHHHHHHHHHcCCCEEEEeccCCHHHHHHHHHHHHhcCCCcceEEEEEcCCCCHHHHH
Confidence 55555542 33333333332222455666788999999998533222 3344455555 55555443 577777
Q ss_pred HHHHcCCCEEEEe-cCCCCcccCCCCchhhhHHHHHHHhCCCCCcEEeecCcCCHHHHHHHHHcCcceeeeccccccCc
Q 020013 125 KAVNAGVDAIIVQ-GREAGGHVIGQDGLISLLPMVVDLIGDRDIPIIAAGGIVDARGYVAALSLGAQGICLGTRFVASE 202 (332)
Q Consensus 125 ~a~~~g~D~ivv~-G~eaGGh~~~~~~~~~ll~~i~~~~~~~~iPviaaGGI~~~~~v~~al~~GA~gV~~GT~fl~t~ 202 (332)
...+.++|.+++. +..++ . .|......-++.+++... .+.++.+.||| +++++..+..+|||.+++||.+..++
T Consensus 129 ~~~~~~~~~~v~~~a~~~~-~-~Gvv~s~~e~~~ir~~~~-~~~~i~v~gGI-~~~~~~~~~~aGad~~VvG~~I~~a~ 203 (221)
T 3exr_A 129 QWLDAGISQAIYHQSRDAL-L-AGETWGEKDLNKVKKLIE-MGFRVSVTGGL-SVDTLKLFEGVDVFTFIAGRGITEAK 203 (221)
T ss_dssp HHHHTTCCEEEEECCHHHH-H-HTCCCCHHHHHHHHHHHH-HTCEEEEESSC-CGGGGGGGTTCCCSEEEECHHHHTSS
T ss_pred HHHcCCHHHHHHHHHHhcC-C-CccccCHHHHHHHHHhhc-CCceEEEECCC-CHHHHHHHHHCCCCEEEECchhhCCC
Confidence 7788899988873 22111 1 122222233444544432 15789999999 88999999999999999999877653
|
| >4ab4_A Xenobiotic reductase B; oxidoreductase, OLD yellow enzyme; HET: FMN TNL EDO; 1.50A {Pseudomonas putida KT2440} | Back alignment and structure |
|---|
Probab=98.15 E-value=1.7e-05 Score=74.53 Aligned_cols=110 Identities=21% Similarity=0.285 Sum_probs=78.8
Q ss_pred HHHHhcCCcEEEEccCC---------C-------------------cHHHHHHHHhC-CC-EEEEecCC-----------
Q 020013 81 KAILSEKVAVLQVSWGE---------Y-------------------SEELVLEAHSA-GV-KVVPQVGS----------- 119 (332)
Q Consensus 81 ~~~~~~~~~~I~~~~g~---------~-------------------~~~~i~~~~~~-g~-~v~~~v~s----------- 119 (332)
+.+.++|.|.|.+|.++ + ..++++.+++. |. +|...++.
T Consensus 160 ~~a~~aGfDgVEih~a~GYLl~QFLSp~~N~RtD~yGGslenR~rf~~eiv~aVr~~vg~~~v~vRls~~~~~~g~~~~~ 239 (362)
T 4ab4_A 160 ENAKAAGFDGVEIHGANGYLLDQFLQSSTNQRTDRYGGSLENRARLLLEVTDAAIEVWGAQRVGVHLAPRADAHDMGDAD 239 (362)
T ss_dssp HHHHHTTCSEEEEECCTTSHHHHHHSTTTCCCCSTTSSSHHHHHHHHHHHHHHHHHHHCGGGEEEEECTTCCSSSCCCTT
T ss_pred HHHHHcCCCEEEECCcCccHHHhhcCCccccccCCCCCchhhHHHHHHHHHHHHHHhcCCCceEEEeeccccccccCCCC
Confidence 34567899999998653 1 12455555542 21 55544331
Q ss_pred -HHH----HHHHHHcCCCEEEEecCCCCcccCCCCchhhhHHHHHHHhCCCCCcEEeecCcCCHHHHHHHHHcC-cceee
Q 020013 120 -FDE----ARKAVNAGVDAIIVQGREAGGHVIGQDGLISLLPMVVDLIGDRDIPIIAAGGIVDARGYVAALSLG-AQGIC 193 (332)
Q Consensus 120 -~~~----a~~a~~~g~D~ivv~G~eaGGh~~~~~~~~~ll~~i~~~~~~~~iPviaaGGI~~~~~v~~al~~G-A~gV~ 193 (332)
.++ ++.+.+.|+|+|-+.+.. . +. .++.++++.+ ++|||+.||| +++++.++++.| ||.|.
T Consensus 240 ~~~~~~~la~~l~~~Gvd~i~v~~~~----~-~~----~~~~~ik~~~---~iPvi~~Ggi-t~e~a~~~l~~g~aD~V~ 306 (362)
T 4ab4_A 240 RAETFTYVARELGKRGIAFICSRERE----A-DD----SIGPLIKEAF---GGPYIVNERF-DKASANAALASGKADAVA 306 (362)
T ss_dssp HHHHHHHHHHHHHHTTCSEEEEECCC----C-TT----CCHHHHHHHH---CSCEEEESSC-CHHHHHHHHHTTSCSEEE
T ss_pred cHHHHHHHHHHHHHhCCCEEEECCCC----C-CH----HHHHHHHHHC---CCCEEEeCCC-CHHHHHHHHHcCCccEEE
Confidence 222 455678899999986542 1 11 4567888887 7999999999 999999999998 99999
Q ss_pred eccccccCcc
Q 020013 194 LGTRFVASEE 203 (332)
Q Consensus 194 ~GT~fl~t~E 203 (332)
+|+.|+..++
T Consensus 307 iGR~~lanPd 316 (362)
T 4ab4_A 307 FGVPFIANPD 316 (362)
T ss_dssp ESHHHHHCTT
T ss_pred ECHHhHhCcH
Confidence 9999998764
|
| >3kru_A NADH:flavin oxidoreductase/NADH oxidase; homotetramer, dimer of dimers, TIM barrel, thermophilic, OLD enzyme; HET: FMN; 1.60A {Thermoanaerobacter pseudethanolicus AT} SCOP: c.1.4.0 PDB: 3krz_A* | Back alignment and structure |
|---|
Probab=98.12 E-value=3e-05 Score=72.31 Aligned_cols=119 Identities=17% Similarity=0.102 Sum_probs=81.2
Q ss_pred HHHHhcCCcEEEEc---------cCCC-------------------cHHHHHHHHhC---CCEEEEecC---------CH
Q 020013 81 KAILSEKVAVLQVS---------WGEY-------------------SEELVLEAHSA---GVKVVPQVG---------SF 120 (332)
Q Consensus 81 ~~~~~~~~~~I~~~---------~g~~-------------------~~~~i~~~~~~---g~~v~~~v~---------s~ 120 (332)
+.+.++|.|.|.+| |.++ ..++++.+++. +.+|...++ +.
T Consensus 150 ~~a~~aGfDgVEih~ahGYLl~qFlsp~~N~R~D~yGGslenR~rf~~eiv~aVr~avg~d~pv~vRls~~~~~~~g~~~ 229 (343)
T 3kru_A 150 KRANLAGYDVVEIHAAHGYLIHEFLSPLSNKRKDEYGNSIENRARFLIEVIDEVRKNWPENKPIFVRVSADDYMEGGINI 229 (343)
T ss_dssp HHHHHHTCSEEEEEECTTSHHHHHHCTTTCCCCSTTSSSHHHHTHHHHHHHHHHHHTSCTTSCEEEEEECCCSSTTSCCH
T ss_pred hhccccCCceEEEecccchhHHHhhcccccccchhhccchHhHHHHHHHHHHHHHhcCCccCCeEEEeechhhhccCccH
Confidence 34567899999998 2221 12556666664 456665443 23
Q ss_pred HH----HHHHHHcCCCEEEEe-cCCCCccc-CCCCchhhhHHHHHHHhCCCCCcEEeecCcCCHHHHHHHHHcC-cceee
Q 020013 121 DE----ARKAVNAGVDAIIVQ-GREAGGHV-IGQDGLISLLPMVVDLIGDRDIPIIAAGGIVDARGYVAALSLG-AQGIC 193 (332)
Q Consensus 121 ~~----a~~a~~~g~D~ivv~-G~eaGGh~-~~~~~~~~ll~~i~~~~~~~~iPviaaGGI~~~~~v~~al~~G-A~gV~ 193 (332)
++ ++.+.+. +|+|-+. |....... ..+...+.++.++++.+ ++||++.|||.+++++.++++.| ||.|.
T Consensus 230 ~~~~~~a~~l~~~-vd~i~vs~g~~~~~~~~~~~~~~~~~~~~ir~~~---~iPVi~~Ggi~t~e~Ae~~l~~G~aD~V~ 305 (343)
T 3kru_A 230 DMMVEYINMIKDK-VDLIDVSSGGLLNVDINLYPGYQVKYAETIKKRC---NIKTSAVGLITTQELAEEILSNERADLVA 305 (343)
T ss_dssp HHHHHHHHHHTTT-CSEEEEECCCSSCCCCCCCTTTTHHHHHHHHHHH---TCEEEEESSCCCHHHHHHHHHTTSCSEEE
T ss_pred HHHHHHHHHhhcc-ccEEeccCCceEeeeecccCceeehHHHHHHHhc---CcccceeeeeeHHHHHHHHHhchhhHHHH
Confidence 44 4445667 9999984 32111000 01112466778888888 79999999999999999999998 99999
Q ss_pred eccccccCcc
Q 020013 194 LGTRFVASEE 203 (332)
Q Consensus 194 ~GT~fl~t~E 203 (332)
+|+.|+..++
T Consensus 306 iGR~~lanPd 315 (343)
T 3kru_A 306 LGRELLRNPY 315 (343)
T ss_dssp ESHHHHHCTT
T ss_pred HHHHHhcCCe
Confidence 9999998754
|
| >1ka9_F Imidazole glycerol phosphtate synthase; riken structural genomics/proteomics initiative, RSGI, structural genomics, transferase; 2.30A {Thermus thermophilus} SCOP: c.1.2.1 | Back alignment and structure |
|---|
Probab=98.10 E-value=3.7e-06 Score=74.77 Aligned_cols=78 Identities=21% Similarity=0.288 Sum_probs=62.0
Q ss_pred HHHHHHHHHcCCCEEEEecCCCCcccCCCCchhhhHHHHHHHhCCCCCcEEeecCcCCHHHHHHHHHcCcceeeeccccc
Q 020013 120 FDEARKAVNAGVDAIIVQGREAGGHVIGQDGLISLLPMVVDLIGDRDIPIIAAGGIVDARGYVAALSLGAQGICLGTRFV 199 (332)
Q Consensus 120 ~~~a~~a~~~g~D~ivv~G~eaGGh~~~~~~~~~ll~~i~~~~~~~~iPviaaGGI~~~~~v~~al~~GA~gV~~GT~fl 199 (332)
.+.++.+.+.|+|.|.+....+.+. +....+.++.++++.+ ++||++.|||.+.+++.+++.+|||+|.+|+.++
T Consensus 34 ~~~a~~~~~~Gad~i~v~d~~~~~~--~~~~~~~~i~~i~~~~---~iPvi~~Ggi~~~~~~~~~~~~Gad~V~lg~~~l 108 (252)
T 1ka9_F 34 VEAARAYDEAGADELVFLDISATHE--ERAILLDVVARVAERV---FIPLTVGGGVRSLEDARKLLLSGADKVSVNSAAV 108 (252)
T ss_dssp HHHHHHHHHHTCSCEEEEECCSSTT--CHHHHHHHHHHHHTTC---CSCEEEESSCCSHHHHHHHHHHTCSEEEECHHHH
T ss_pred HHHHHHHHHcCCCEEEEEcCCcccc--CccccHHHHHHHHHhC---CCCEEEECCcCCHHHHHHHHHcCCCEEEEChHHH
Confidence 3556777889999998876654433 1223466777777765 7999999999999999999999999999999999
Q ss_pred cCc
Q 020013 200 ASE 202 (332)
Q Consensus 200 ~t~ 202 (332)
..+
T Consensus 109 ~~p 111 (252)
T 1ka9_F 109 RRP 111 (252)
T ss_dssp HCT
T ss_pred hCc
Confidence 654
|
| >1x1o_A Nicotinate-nucleotide pyrophosphorylase; transferase, structural genomics, NPPSFA, national project O structural and functional analyses; 1.90A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=98.08 E-value=1.6e-05 Score=72.03 Aligned_cols=87 Identities=26% Similarity=0.349 Sum_probs=66.4
Q ss_pred HHHHHHHhC---CCEEEEecCCHHHHHHHHHcCCCEEEEecCCCCcccCCCCchhhhHHHHHHHhCCCCCcEEeecCcCC
Q 020013 101 ELVLEAHSA---GVKVVPQVGSFDEARKAVNAGVDAIIVQGREAGGHVIGQDGLISLLPMVVDLIGDRDIPIIAAGGIVD 177 (332)
Q Consensus 101 ~~i~~~~~~---g~~v~~~v~s~~~a~~a~~~g~D~ivv~G~eaGGh~~~~~~~~~ll~~i~~~~~~~~iPviaaGGI~~ 177 (332)
.-++.+++. ..++...|.|.++++++.+.|+|+|.+.+. . ...++++++.++. ++|+.++||| +
T Consensus 184 ~av~~ar~~~~~~~~IgVev~t~eea~eA~~aGaD~I~ld~~-------~----~~~~k~av~~v~~-~ipi~AsGGI-t 250 (286)
T 1x1o_A 184 EAVRRAKARAPHYLKVEVEVRSLEELEEALEAGADLILLDNF-------P----LEALREAVRRVGG-RVPLEASGNM-T 250 (286)
T ss_dssp HHHHHHHHHSCTTSCEEEEESSHHHHHHHHHHTCSEEEEESC-------C----HHHHHHHHHHHTT-SSCEEEESSC-C
T ss_pred HHHHHHHHhCCCCCEEEEEeCCHHHHHHHHHcCCCEEEECCC-------C----HHHHHHHHHHhCC-CCeEEEEcCC-C
Confidence 344555543 367888999999999999999999998543 1 1234455555532 6999999999 8
Q ss_pred HHHHHHHHHcCcceeeecccccc
Q 020013 178 ARGYVAALSLGAQGICLGTRFVA 200 (332)
Q Consensus 178 ~~~v~~al~~GA~gV~~GT~fl~ 200 (332)
.+++.++.+.|+|++.+|+....
T Consensus 251 ~eni~~~a~tGvD~IsVgs~~~~ 273 (286)
T 1x1o_A 251 LERAKAAAEAGVDYVSVGALTHS 273 (286)
T ss_dssp HHHHHHHHHHTCSEEECTHHHHS
T ss_pred HHHHHHHHHcCCCEEEEcHHHcC
Confidence 99999999999999999886543
|
| >3glc_A Aldolase LSRF; TIM barrel, lyase, schiff base; HET: R5P; 2.50A {Escherichia coli} PDB: 3gnd_A* 3gkf_O | Back alignment and structure |
|---|
Probab=98.07 E-value=5.5e-05 Score=68.87 Aligned_cols=109 Identities=19% Similarity=0.223 Sum_probs=76.4
Q ss_pred HHHHHHhcCCcEEEEc--cCCCcH--------HHHHHHHhCCCEEEEec-------CCHH----HHHHHHHcCCCEEEEe
Q 020013 79 NIKAILSEKVAVLQVS--WGEYSE--------ELVLEAHSAGVKVVPQV-------GSFD----EARKAVNAGVDAIIVQ 137 (332)
Q Consensus 79 ~~~~~~~~~~~~I~~~--~g~~~~--------~~i~~~~~~g~~v~~~v-------~s~~----~a~~a~~~g~D~ivv~ 137 (332)
.++.+++.|++.|.++ .|.... ++++.+++.|++++... .+.+ .++.+.+.|+|+|.+.
T Consensus 130 ~ve~Av~~GAdaV~~~i~~Gs~~~~~~l~~i~~v~~~a~~~GlpvIie~~~G~~~~~d~e~i~~aariA~elGAD~VKt~ 209 (295)
T 3glc_A 130 SMDDAVRLNSCAVAAQVYIGSEYEHQSIKNIIQLVDAGMKVGMPTMAVTGVGKDMVRDQRYFSLATRIAAEMGAQIIKTY 209 (295)
T ss_dssp CHHHHHHTTCSEEEEEECTTSTTHHHHHHHHHHHHHHHHTTTCCEEEEECC----CCSHHHHHHHHHHHHHTTCSEEEEE
T ss_pred HHHHHHHCCCCEEEEEEECCCCcHHHHHHHHHHHHHHHHHcCCEEEEECCCCCccCCCHHHHHHHHHHHHHhCCCEEEeC
Confidence 4678889999998875 444222 23445566789887632 2322 4566789999999884
Q ss_pred cCCCCcccCCCCchhhhHHHHHHHhCCCCCcEEeecCcCCH-----HHHHHHHHcCcceeeeccccccCc
Q 020013 138 GREAGGHVIGQDGLISLLPMVVDLIGDRDIPIIAAGGIVDA-----RGYVAALSLGAQGICLGTRFVASE 202 (332)
Q Consensus 138 G~eaGGh~~~~~~~~~ll~~i~~~~~~~~iPviaaGGI~~~-----~~v~~al~~GA~gV~~GT~fl~t~ 202 (332)
-+ + ..+.++++.. .+||+++||+... +.+.+++.+||+|+.+|+.++..+
T Consensus 210 ~t---~---------e~~~~vv~~~---~vPVv~~GG~~~~~~~~l~~v~~ai~aGA~Gv~vGRnI~q~~ 264 (295)
T 3glc_A 210 YV---E---------KGFERIVAGC---PVPIVIAGGKKLPEREALEMCWQAIDQGASGVDMGRNIFQSD 264 (295)
T ss_dssp CC---T---------TTHHHHHHTC---SSCEEEECCSCCCHHHHHHHHHHHHHTTCSEEEESHHHHTSS
T ss_pred CC---H---------HHHHHHHHhC---CCcEEEEECCCCCHHHHHHHHHHHHHhCCeEEEeHHHHhcCc
Confidence 11 1 2346666655 6999999999743 357788899999999999988774
|
| >3ngj_A Deoxyribose-phosphate aldolase; lyase, structural genomics, structural genomics center for infectious disease, ssgcid; 1.70A {Entamoeba histolytica} | Back alignment and structure |
|---|
Probab=97.98 E-value=0.00016 Score=63.46 Aligned_cols=107 Identities=18% Similarity=0.227 Sum_probs=67.7
Q ss_pred HHHHHHhcCCcEEEEcc-------CCCcHHHH---HHHHh-C-C--CEEEEecC--CHHHHHHH----HHcCCCEEEEe-
Q 020013 79 NIKAILSEKVAVLQVSW-------GEYSEELV---LEAHS-A-G--VKVVPQVG--SFDEARKA----VNAGVDAIIVQ- 137 (332)
Q Consensus 79 ~~~~~~~~~~~~I~~~~-------g~~~~~~i---~~~~~-~-g--~~v~~~v~--s~~~a~~a----~~~g~D~ivv~- 137 (332)
..+.+++.|+|-|.+.. |+ ...+. +.+++ . + +|++.... +.++..++ .++|+|+|...
T Consensus 100 Ea~~Ai~~GAdEIDmViNig~lk~g~-~~~v~~eI~~v~~a~~~~~lKVIlEt~~Lt~eei~~a~~ia~~aGADfVKTST 178 (239)
T 3ngj_A 100 ETKVAVEQGAEEVDMVINIGMVKAKK-YDDVEKDVKAVVDASGKALTKVIIECCYLTNEEKVEVCKRCVAAGAEYVKTST 178 (239)
T ss_dssp HHHHHHHTTCSEEEEECCHHHHHTTC-HHHHHHHHHHHHHHHTTSEEEEECCGGGSCHHHHHHHHHHHHHHTCSEEECCC
T ss_pred HHHHHHHcCCCEEEEEeehHHhcccc-HHHHHHHHHHHHHHhcCCceEEEEecCCCCHHHHHHHHHHHHHHCcCEEECCC
Confidence 35567788999988753 22 12222 22222 1 2 45654332 55555544 78999999874
Q ss_pred cCCCCcccCCCCchhhhHHHHHHHhCCCCCcEEeecCcCCHHHHHHHHHcCcceee
Q 020013 138 GREAGGHVIGQDGLISLLPMVVDLIGDRDIPIIAAGGIVDARGYVAALSLGAQGIC 193 (332)
Q Consensus 138 G~eaGGh~~~~~~~~~ll~~i~~~~~~~~iPviaaGGI~~~~~v~~al~~GA~gV~ 193 (332)
|+..||-+ .....++++. +. .+++|-++|||.+.+++.+++.+||+.+-
T Consensus 179 Gf~~ggAt---~~dv~lmr~~---vg-~~v~VKasGGIrt~~da~~~i~aGA~riG 227 (239)
T 3ngj_A 179 GFGTHGAT---PEDVKLMKDT---VG-DKALVKAAGGIRTFDDAMKMINNGASRIG 227 (239)
T ss_dssp SSSSCCCC---HHHHHHHHHH---HG-GGSEEEEESSCCSHHHHHHHHHTTEEEEE
T ss_pred CCCCCCCC---HHHHHHHHHh---hC-CCceEEEeCCCCCHHHHHHHHHhccccee
Confidence 66544432 2334444443 32 26999999999999999999999999543
|
| >2hsa_B 12-oxophytodienoate reductase 3; alpha beta 8 barrel, flavoprotein, jasmonate biosynthesis, oxidoreductase; HET: FMN; 1.50A {Solanum lycopersicum} PDB: 2hs6_A* 3hgs_A* 2hs8_A* 3hgo_A* 1q45_A* 2g5w_A* 2q3o_A* | Back alignment and structure |
|---|
Probab=97.97 E-value=6.8e-05 Score=71.40 Aligned_cols=78 Identities=13% Similarity=0.123 Sum_probs=57.6
Q ss_pred HHHHHHHcC------CCEEEEecCCCCcccCCCC-------chhhhHHHHHHHhCCCCCcEEeecCcCCHHHHHHHHHcC
Q 020013 122 EARKAVNAG------VDAIIVQGREAGGHVIGQD-------GLISLLPMVVDLIGDRDIPIIAAGGIVDARGYVAALSLG 188 (332)
Q Consensus 122 ~a~~a~~~g------~D~ivv~G~eaGGh~~~~~-------~~~~ll~~i~~~~~~~~iPviaaGGI~~~~~v~~al~~G 188 (332)
-++.+.+.| +|+|-+.+...-.+...+. ..+.++..+++.+ ++|||+.||| +++++.++|+.|
T Consensus 265 la~~le~~G~~gg~~vd~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~vk~~~---~iPvi~~G~i-~~~~a~~~l~~g 340 (402)
T 2hsa_B 265 VVERLNKIQLHSGSKLAYLHVTQPRYVAYGQTEAGRLGSEEEEARLMRTLRNAY---QGTFICSGGY-TRELGIEAVAQG 340 (402)
T ss_dssp HHHHHHHHHHHHTSCCSEEEEECCCCCTTTTSSSTTTTHHHHHHHHHHHHHHHC---SSCEEEESSC-CHHHHHHHHHTT
T ss_pred HHHHHHhcCCccCCceEEEEEecCccccccCCccccccCCcchHHHHHHHHHHC---CCCEEEeCCC-CHHHHHHHHHCC
Confidence 345667789 9999997532111100110 1355677777777 7999999999 999999999988
Q ss_pred -cceeeeccccccCcc
Q 020013 189 -AQGICLGTRFVASEE 203 (332)
Q Consensus 189 -A~gV~~GT~fl~t~E 203 (332)
||+|.+|+.|+..++
T Consensus 341 ~aD~V~igR~~l~dP~ 356 (402)
T 2hsa_B 341 DADLVSYGRLFISNPD 356 (402)
T ss_dssp SCSEEEESHHHHHCTT
T ss_pred CCceeeecHHHHhCch
Confidence 999999999998754
|
| >2w6r_A Imidazole glycerol phosphate synthase subunit HISF; lyase, fusion protein, cobalamin, precorrin, novel fold, VIT; 2.10A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=97.95 E-value=2e-05 Score=70.55 Aligned_cols=92 Identities=22% Similarity=0.243 Sum_probs=65.1
Q ss_pred CHHHHHHHHHcCCCEEEEecCCCCcccCCCCchhhhHHHHHHHhCCCCCcEEeecCcCCHHHHHHHHHcCcceeeecccc
Q 020013 119 SFDEARKAVNAGVDAIIVQGREAGGHVIGQDGLISLLPMVVDLIGDRDIPIIAAGGIVDARGYVAALSLGAQGICLGTRF 198 (332)
Q Consensus 119 s~~~a~~a~~~g~D~ivv~G~eaGGh~~~~~~~~~ll~~i~~~~~~~~iPviaaGGI~~~~~v~~al~~GA~gV~~GT~f 198 (332)
..+.++.+.+.|+|.|.+....+.|.. ....+.++.++++.. ++||++.|||.+.+++.+++.+|||+|.+|+.+
T Consensus 32 ~~~~a~~~~~~Ga~~i~v~d~~~~~~~--~g~~~~~i~~i~~~~---~iPvi~~ggi~~~~~i~~~~~~Gad~v~lg~~~ 106 (266)
T 2w6r_A 32 LRDWVVEVEKRGAGEILLTSIDRDGTK--SGYDTEMIRFVRPLT---TLPIIASGGAGKMEHFLEAFLAGADKALAASVF 106 (266)
T ss_dssp HHHHHHHHHHHTCSEEEEEETTTSSCS--SCCCHHHHHHHGGGC---CSCEEEESCCCSTHHHHHHHHHTCSEEECCCCC
T ss_pred HHHHHHHHHHCCCCEEEEEecCcccCC--CcccHHHHHHHHHhc---CCCEEEECCCCCHHHHHHHHHcCCcHhhhhHHH
Confidence 356677788899999999765543322 113467788887765 799999999999999999999999999999998
Q ss_pred ccCccCCCCHHHHHHHhcC
Q 020013 199 VASEESYAHPEYKRKLVEM 217 (332)
Q Consensus 199 l~t~Es~~~~~~k~~~~~~ 217 (332)
+-... -++.+++.+...
T Consensus 107 ~~~~~--~~~~~~~~~~~~ 123 (266)
T 2w6r_A 107 HFREI--DMRELKEYLKKH 123 (266)
T ss_dssp --------CHHHHHHCC--
T ss_pred HhCCC--CHHHHHHHHHHc
Confidence 82110 134566654443
|
| >3oa3_A Aldolase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, pathogenic fungus; 1.60A {Coccidioides immitis} | Back alignment and structure |
|---|
Probab=97.94 E-value=0.00014 Score=65.57 Aligned_cols=109 Identities=21% Similarity=0.242 Sum_probs=70.2
Q ss_pred HHHHHHhcCCcEEEEcc-------CCCcHH---HHHHHHh-C---CCEEEEec--CCHHH----HHHHHHcCCCEEEEe-
Q 020013 79 NIKAILSEKVAVLQVSW-------GEYSEE---LVLEAHS-A---GVKVVPQV--GSFDE----ARKAVNAGVDAIIVQ- 137 (332)
Q Consensus 79 ~~~~~~~~~~~~I~~~~-------g~~~~~---~i~~~~~-~---g~~v~~~v--~s~~~----a~~a~~~g~D~ivv~- 137 (332)
..+.+++.|+|-|.+.. |+ ... .++.+++ . .++++... -+.++ ++.+.++|+|+|...
T Consensus 131 Ea~~Ai~~GAdEIDmVINig~lk~g~-~~~v~~eI~~V~~a~~~~~lKVIlEt~~Lt~eei~~A~~ia~eaGADfVKTST 209 (288)
T 3oa3_A 131 EAKRAMQNGASELDMVMNYPWLSEKR-YTDVFQDIRAVRLAAKDAILKVILETSQLTADEIIAGCVLSSLAGADYVKTST 209 (288)
T ss_dssp HHHHHHHTTCSEEEEECCHHHHHTTC-HHHHHHHHHHHHHHTTTSEEEEECCGGGCCHHHHHHHHHHHHHTTCSEEECCC
T ss_pred HHHHHHHcCCCEEEEEeehhhhcCCc-HHHHHHHHHHHHHHhcCCCceEEEECCCCCHHHHHHHHHHHHHcCCCEEEcCC
Confidence 35567888999988542 21 122 2333333 2 25666433 35555 445678999999873
Q ss_pred cCCCCcccCCCCchhhhHHHHHHHhCCCCCcEEeecCcCCHHHHHHHHHcCccee
Q 020013 138 GREAGGHVIGQDGLISLLPMVVDLIGDRDIPIIAAGGIVDARGYVAALSLGAQGI 192 (332)
Q Consensus 138 G~eaGGh~~~~~~~~~ll~~i~~~~~~~~iPviaaGGI~~~~~v~~al~~GA~gV 192 (332)
|+..+|- ......++.++++... .++||.++|||.+.+++.+++.+||+-+
T Consensus 210 Gf~~~GA---T~edv~lmr~~v~~~g-~~v~VKAAGGIrt~edAl~mi~aGA~Ri 260 (288)
T 3oa3_A 210 GFNGPGA---SIENVSLMSAVCDSLQ-SETRVKASGGIRTIEDCVKMVRAGAERL 260 (288)
T ss_dssp SSSSCCC---CHHHHHHHHHHHHHSS-SCCEEEEESSCCSHHHHHHHHHTTCSEE
T ss_pred CCCCCCC---CHHHHHHHHHHHHHhC-CCceEEEeCCCCCHHHHHHHHHcCCcee
Confidence 4433332 2344666666665322 2799999999999999999999999954
|
| >1o4u_A Type II quinolic acid phosphoribosyltransferase; structural genomics, joint center for structural genomics, J protein structure initiative; 2.50A {Thermotoga maritima} SCOP: c.1.17.1 d.41.2.1 | Back alignment and structure |
|---|
Probab=97.93 E-value=1.6e-05 Score=72.01 Aligned_cols=91 Identities=19% Similarity=0.182 Sum_probs=68.3
Q ss_pred HHHHHHHHhCC---CEEEEecCCHHHHHHHHHcCCCEEEEecCCCCcccCCCCchhhhHHHHHHHhCC--CCCcEEeecC
Q 020013 100 EELVLEAHSAG---VKVVPQVGSFDEARKAVNAGVDAIIVQGREAGGHVIGQDGLISLLPMVVDLIGD--RDIPIIAAGG 174 (332)
Q Consensus 100 ~~~i~~~~~~g---~~v~~~v~s~~~a~~a~~~g~D~ivv~G~eaGGh~~~~~~~~~ll~~i~~~~~~--~~iPviaaGG 174 (332)
..-++.+++.. .++...|.|.++++.+.++|+|+|.+.+. + ...+.++++.++. .++|+.++||
T Consensus 180 ~~av~~ar~~~~~~~~I~VEV~tleea~eA~~aGaD~I~LDn~-------~----~e~l~~av~~l~~~~~~v~ieASGG 248 (285)
T 1o4u_A 180 ERAVQEVRKIIPFTTKIEVEVENLEDALRAVEAGADIVMLDNL-------S----PEEVKDISRRIKDINPNVIVEVSGG 248 (285)
T ss_dssp HHHHHHHHTTSCTTSCEEEEESSHHHHHHHHHTTCSEEEEESC-------C----HHHHHHHHHHHHHHCTTSEEEEEEC
T ss_pred HHHHHHHHHhCCCCceEEEEeCCHHHHHHHHHcCCCEEEECCC-------C----HHHHHHHHHHhhccCCCceEEEECC
Confidence 44566666653 67888999999999999999999999653 1 1233333333211 1589999999
Q ss_pred cCCHHHHHHHHHcCcceeeeccccccCc
Q 020013 175 IVDARGYVAALSLGAQGICLGTRFVASE 202 (332)
Q Consensus 175 I~~~~~v~~al~~GA~gV~~GT~fl~t~ 202 (332)
| +.+++.++...|+|++.+|+.....+
T Consensus 249 I-t~eni~~~a~tGVD~IsvGslt~sa~ 275 (285)
T 1o4u_A 249 I-TEENVSLYDFETVDVISSSRLTLQEV 275 (285)
T ss_dssp C-CTTTGGGGCCTTCCEEEEGGGTSSCC
T ss_pred C-CHHHHHHHHHcCCCEEEEeHHHcCCC
Confidence 9 89999999999999999999655443
|
| >1to3_A Putative aldolase YIHT; beta-alpha barrel, structural genomics, PSI, protein structure initiative; 2.70A {Salmonella typhimurium} SCOP: c.1.10.1 | Back alignment and structure |
|---|
Probab=97.93 E-value=6.2e-05 Score=68.98 Aligned_cols=117 Identities=23% Similarity=0.314 Sum_probs=76.3
Q ss_pred HHHHHHHhcCCcEEEEc--cCCC--cH-------HHHHHHHhCCCEEEEecC----------C----HHH-HHHHHHcCC
Q 020013 78 ENIKAILSEKVAVLQVS--WGEY--SE-------ELVLEAHSAGVKVVPQVG----------S----FDE-ARKAVNAGV 131 (332)
Q Consensus 78 ~~~~~~~~~~~~~I~~~--~g~~--~~-------~~i~~~~~~g~~v~~~v~----------s----~~~-a~~a~~~g~ 131 (332)
..++.+++.|+++|.+. ++.. .. ++.+.+++.|++++..+. + +.+ ++.+.+.|+
T Consensus 112 ~~ve~a~~~GAdaV~vlv~~~~d~~~~~~~~~i~~v~~~~~~~G~p~lv~~~~~g~~v~~~~~~~~~v~~aa~~a~~lGa 191 (304)
T 1to3_A 112 INAQAVKRDGAKALKLLVLWRSDEDAQQRLNMVKEFNELCHSNGLLSIIEPVVRPPRCGDKFDREQAIIDAAKELGDSGA 191 (304)
T ss_dssp CCHHHHHHTTCCEEEEEEEECTTSCHHHHHHHHHHHHHHHHTTTCEEEEEEEECCCSSCSCCCHHHHHHHHHHHHTTSSC
T ss_pred hhHHHHHHcCCCEEEEEEEcCCCccHHHHHHHHHHHHHHHHHcCCcEEEEEECCCCccccCCChhHHHHHHHHHHHHcCC
Confidence 45778899999999842 3321 11 234455678998775431 1 233 666778899
Q ss_pred CEEEEecCCCCcccCCCCchhhhHHHHHHHhC-CCCCc-EEeecCcCCH----HHHHHHHHcCcceeeeccccccC
Q 020013 132 DAIIVQGREAGGHVIGQDGLISLLPMVVDLIG-DRDIP-IIAAGGIVDA----RGYVAALSLGAQGICLGTRFVAS 201 (332)
Q Consensus 132 D~ivv~G~eaGGh~~~~~~~~~ll~~i~~~~~-~~~iP-viaaGGI~~~----~~v~~al~~GA~gV~~GT~fl~t 201 (332)
|++.+.-+..+ . + .+..+.++.+... ...+| |+++||+ +. +++..++..||+||.+|+.++..
T Consensus 192 D~iKv~~~~~~--~-g---~~~~~~~vv~~~~~~~~~P~Vv~aGG~-~~~~~~~~~~~a~~aGa~Gv~vGRaI~q~ 260 (304)
T 1to3_A 192 DLYKVEMPLYG--K-G---ARSDLLTASQRLNGHINMPWVILSSGV-DEKLFPRAVRVAMEAGASGFLAGRAVWSS 260 (304)
T ss_dssp SEEEECCGGGG--C-S---CHHHHHHHHHHHHHTCCSCEEECCTTS-CTTTHHHHHHHHHHTTCCEEEESHHHHGG
T ss_pred CEEEeCCCcCC--C-C---CHHHHHHHHHhccccCCCCeEEEecCC-CHHHHHHHHHHHHHcCCeEEEEehHHhCc
Confidence 99988442111 0 1 2333444444410 02689 9999999 66 45888999999999999998866
|
| >1qo2_A Molecule: N-((5-phosphoribosyl)-formimino)-5-aminoimidazol- 4-carboxamid ribonucleotid...; isomerase, histidine biosynthesis; 1.85A {Thermotoga maritima} SCOP: c.1.2.1 PDB: 2cff_A 2w79_A | Back alignment and structure |
|---|
Probab=97.92 E-value=7.3e-06 Score=72.48 Aligned_cols=79 Identities=14% Similarity=0.109 Sum_probs=61.3
Q ss_pred CHHHHHHHHHcCCCEEEEecCCCCcccCCCCchhhhHHHHHHHhCCCCCcEEeecCcCCHHHHHHHHHcCcceeeecccc
Q 020013 119 SFDEARKAVNAGVDAIIVQGREAGGHVIGQDGLISLLPMVVDLIGDRDIPIIAAGGIVDARGYVAALSLGAQGICLGTRF 198 (332)
Q Consensus 119 s~~~a~~a~~~g~D~ivv~G~eaGGh~~~~~~~~~ll~~i~~~~~~~~iPviaaGGI~~~~~v~~al~~GA~gV~~GT~f 198 (332)
..+.++.+.+.|+|.|.+....+.+.. ....+.++++++ .. ++||++.|||.+.+++.+++..|||+|.+|+.+
T Consensus 32 ~~~~a~~~~~~Gad~i~v~d~~~~~~~--~~~~~~~i~~i~-~~---~ipvi~~Ggi~~~~~~~~~~~~Gad~V~lg~~~ 105 (241)
T 1qo2_A 32 PVELVEKLIEEGFTLIHVVDLSNAIEN--SGENLPVLEKLS-EF---AEHIQIGGGIRSLDYAEKLRKLGYRRQIVSSKV 105 (241)
T ss_dssp HHHHHHHHHHTTCCCEEEEEHHHHHHC--CCTTHHHHHHGG-GG---GGGEEEESSCCSHHHHHHHHHTTCCEEEECHHH
T ss_pred HHHHHHHHHHcCCCEEEEecccccccC--CchhHHHHHHHH-hc---CCcEEEECCCCCHHHHHHHHHCCCCEEEECchH
Confidence 345677788899999998765442221 123366777776 55 799999999999999999999999999999999
Q ss_pred ccCcc
Q 020013 199 VASEE 203 (332)
Q Consensus 199 l~t~E 203 (332)
+..+|
T Consensus 106 l~~p~ 110 (241)
T 1qo2_A 106 LEDPS 110 (241)
T ss_dssp HHCTT
T ss_pred hhChH
Confidence 87654
|
| >4gj1_A 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino) methylideneamino] imidazole-4-carboxamide...; HISA, csgid, niaid,; 2.15A {Campylobacter jejuni subsp} | Back alignment and structure |
|---|
Probab=97.89 E-value=0.00031 Score=62.23 Aligned_cols=141 Identities=20% Similarity=0.260 Sum_probs=90.5
Q ss_pred HHHHHHHhhcCCcEEEEeecCCCCHHHHHHHHhcCCcEEEEcc-CCCcHHHHHHH-HhCC--CEE-EEec----------
Q 020013 53 DLIRKTRSLTERPFGVGVVLAFPHNENIKAILSEKVAVLQVSW-GEYSEELVLEA-HSAG--VKV-VPQV---------- 117 (332)
Q Consensus 53 ~~i~~~r~~~~~p~gvnl~~~~~~~~~~~~~~~~~~~~I~~~~-g~~~~~~i~~~-~~~g--~~v-~~~v---------- 117 (332)
+.++++.+....|+-++=-+. ..+.++.+++.|++-|.++- -...+++++.+ +..| ..+ ...+
T Consensus 65 ~~i~~i~~~~~~pl~vGGGIr--s~e~~~~~l~~GadkVii~t~a~~~p~li~e~~~~~g~q~iv~~iD~~~~~~~~v~~ 142 (243)
T 4gj1_A 65 ALIEKLAKEVSVNLQVGGGIR--SKEEVKALLDCGVKRVVIGSMAIKDATLCLEILKEFGSEAIVLALDTILKEDYVVAV 142 (243)
T ss_dssp HHHHHHHHHCCSEEEEESSCC--CHHHHHHHHHTTCSEEEECTTTTTCHHHHHHHHHHHCTTTEEEEEEEEESSSEEEC-
T ss_pred HHHHHHHHhcCCCeEeccccc--cHHHHHHHHHcCCCEEEEccccccCCchHHHHHhcccCceEEEEEEEEeCCCCEEEe
Confidence 456666555667776653332 25778889999999888752 22234555443 3332 111 1111
Q ss_pred ------C--C-HHHHHHHHHcCCCEEEEecCCCCcccCCCCchhhhHHHHHHHhCCCCCcEEeecCcCCHHHHHHHHHcC
Q 020013 118 ------G--S-FDEARKAVNAGVDAIIVQGREAGGHVIGQDGLISLLPMVVDLIGDRDIPIIAAGGIVDARGYVAALSLG 188 (332)
Q Consensus 118 ------~--s-~~~a~~a~~~g~D~ivv~G~eaGGh~~~~~~~~~ll~~i~~~~~~~~iPviaaGGI~~~~~v~~al~~G 188 (332)
+ + .+.++...+.|+.-|++...+--|...| ..+.++..+.+... ++|||++||+++.+|+.+. ..+
T Consensus 143 ~gw~~~~~~~~~~~~~~~~~~g~~eil~t~Id~DGt~~G--~d~~l~~~l~~~~~--~ipviasGGv~~~~Dl~~l-~~~ 217 (243)
T 4gj1_A 143 NAWQEASDKKLMEVLDFYSNKGLKHILCTDISKDGTMQG--VNVRLYKLIHEIFP--NICIQASGGVASLKDLENL-KGI 217 (243)
T ss_dssp -------CCBHHHHHHHHHTTTCCEEEEEETTC-----C--CCHHHHHHHHHHCT--TSEEEEESCCCSHHHHHHT-TTT
T ss_pred cCceecccchHHHHHHHHhhcCCcEEEeeeecccccccC--CCHHHHHHHHHhcC--CCCEEEEcCCCCHHHHHHH-Hcc
Confidence 0 1 3456677889999999976544343222 34778888887653 6999999999999999875 667
Q ss_pred cceeeecccccc
Q 020013 189 AQGICLGTRFVA 200 (332)
Q Consensus 189 A~gV~~GT~fl~ 200 (332)
++||.+|++|..
T Consensus 218 ~~gvivg~Al~~ 229 (243)
T 4gj1_A 218 CSGVIVGKALLD 229 (243)
T ss_dssp CSEEEECHHHHT
T ss_pred CchhehHHHHHC
Confidence 999999999853
|
| >2b7n_A Probable nicotinate-nucleotide pyrophosphorylase; quinolinate phosphoribosyltransferase, quinolinic acid, HELI pylori, transferase; HET: NTM; 2.30A {Helicobacter pylori} PDB: 2b7p_A* 2b7q_A* | Back alignment and structure |
|---|
Probab=97.88 E-value=3.2e-05 Score=69.81 Aligned_cols=88 Identities=20% Similarity=0.265 Sum_probs=66.3
Q ss_pred HHHHHHHHhCC---CEEEEecCCHHHHHHHHHcCCCEEEEecCCCCcccCCCCchhhhHHHHHHHhCC--CCCcEEeecC
Q 020013 100 EELVLEAHSAG---VKVVPQVGSFDEARKAVNAGVDAIIVQGREAGGHVIGQDGLISLLPMVVDLIGD--RDIPIIAAGG 174 (332)
Q Consensus 100 ~~~i~~~~~~g---~~v~~~v~s~~~a~~a~~~g~D~ivv~G~eaGGh~~~~~~~~~ll~~i~~~~~~--~~iPviaaGG 174 (332)
.+-++.+++.. .++...+.+.++++.+.+.|+|+|.+... + ...+.++++.++. .++|+.++||
T Consensus 169 ~~ai~~~r~~~~~~~~i~vev~tlee~~~A~~aGaD~I~ld~~-------~----~~~l~~~v~~l~~~~~~~~i~AsGG 237 (273)
T 2b7n_A 169 KSFLTHARKNLPFTAKIEIECESFEEAKNAMNAGADIVMCDNL-------S----VLETKEIAAYRDAHYPFVLLEASGN 237 (273)
T ss_dssp HHHHHHHGGGSCTTCCEEEEESSHHHHHHHHHHTCSEEEEETC-------C----HHHHHHHHHHHHHHCTTCEEEEESS
T ss_pred HHHHHHHHHhCCCCceEEEEcCCHHHHHHHHHcCCCEEEECCC-------C----HHHHHHHHHHhhccCCCcEEEEECC
Confidence 34556666542 57888999999999999999999998542 1 2333433333311 1589999999
Q ss_pred cCCHHHHHHHHHcCcceeeeccccc
Q 020013 175 IVDARGYVAALSLGAQGICLGTRFV 199 (332)
Q Consensus 175 I~~~~~v~~al~~GA~gV~~GT~fl 199 (332)
| |.+++.+++..|+|++.+|+.+.
T Consensus 238 I-~~~ni~~~~~aGaD~i~vGs~i~ 261 (273)
T 2b7n_A 238 I-SLESINAYAKSGVDAISVGALIH 261 (273)
T ss_dssp C-CTTTHHHHHTTTCSEEECTHHHH
T ss_pred C-CHHHHHHHHHcCCcEEEEcHHhc
Confidence 9 99999999999999999999855
|
| >3vk5_A MOEO5; TIM barrel, transferase; HET: FPQ; 1.39A {Streptomyces ghanaensis} PDB: 3vka_A* 3vkb_A* 3vkc_A* 3vkd_A* | Back alignment and structure |
|---|
Probab=97.88 E-value=3.8e-05 Score=68.80 Aligned_cols=171 Identities=12% Similarity=0.059 Sum_probs=102.4
Q ss_pred eecCCCCCCCCcHH---HHHHHHhCCCceeecCCCCCC--HHHHHHHHHHHHhhcCCcEEEEee---cCCCCHHHHHHHH
Q 020013 13 IVQAPLGPDISGPE---LVAAVANAGGLGLLRAPDWEA--PDYLRDLIRKTRSLTERPFGVGVV---LAFPHNENIKAIL 84 (332)
Q Consensus 13 ii~apM~~g~s~~~---la~avs~aGglG~i~~~~~~~--~e~~~~~i~~~r~~~~~p~gvnl~---~~~~~~~~~~~~~ 84 (332)
++.+|-- ....+ ++..+++.|.=.++......+ .+.+.+.++.+|+.++.|+-..+. .+. .. +
T Consensus 43 ~liDPdK--~~~~~~~~~~~~~~~sGtDai~VGS~~vt~~~~~~~~~v~~ik~~~~lPvil~fPP~~g~~---~~----i 113 (286)
T 3vk5_A 43 HIIDPFK--VPVTEAVEKAAELTRLGFAAVLLASTDYESFESHMEPYVAAVKAATPLPVVLHFPPRPGAG---FP----V 113 (286)
T ss_dssp EEECTTT--SCHHHHHHHHHHHHHTTCSCEEEECSCCSSHHHHHHHHHHHHHHHCSSCEEEECCCBTTTB---SC----C
T ss_pred EEECCCC--CCcHHHHHHHHHHHhcCCCEEEEccCCCCcchHHHHHHHHHHHHhCCCCEEEECCCCCCCc---cc----c
Confidence 3456643 23333 677788887433332212256 788999999999988888776433 111 00 1
Q ss_pred hcCCcEEEEc---cCCCcHHHHHH---------H----HhCCCEEEEe-------------------cCCHHH------H
Q 020013 85 SEKVAVLQVS---WGEYSEELVLE---------A----HSAGVKVVPQ-------------------VGSFDE------A 123 (332)
Q Consensus 85 ~~~~~~I~~~---~g~~~~~~i~~---------~----~~~g~~v~~~-------------------v~s~~~------a 123 (332)
..++|++.+. -+..+..++.. + ++.| .+++. .++++. +
T Consensus 114 ~~~aDa~l~psvlNs~n~~~i~g~~~~~~aa~~v~~~~~~~g-e~ip~gYL~v~~g~k~V~fv~~~~~~~~e~A~~~aYa 192 (286)
T 3vk5_A 114 VRGADALLLPALLGSGDDYFVWKSFLETLAAFPGRIPREEWP-ELLLTVALTFGEDPRTGDLLGTVPVSTASTEEIDRYL 192 (286)
T ss_dssp CTTCSEEEEEEETTBSSHHHHTHHHHHHHHHCSTTSCGGGCC-EEEEEEEEECSCCHHHHHHHCBCCCCCSSSHHHHHHH
T ss_pred ccCCCEEEEEEEecCCCcccccCcHHHHHHhHHHHHHHHHhC-CcceEEEEEECCCCceeeeeCCCCCCCHHHHHHHHHH
Confidence 2245555432 11222222222 1 2223 33211 112222 2
Q ss_pred HHHHHcCCCEEEEecCCCCcccCCCCchhhhHHHHHHHhCCCCCcEEeecCcCCHHHHHHHHHcCcceeeeccccccC
Q 020013 124 RKAVNAGVDAIIVQGREAGGHVIGQDGLISLLPMVVDLIGDRDIPIIAAGGIVDARGYVAALSLGAQGICLGTRFVAS 201 (332)
Q Consensus 124 ~~a~~~g~D~ivv~G~eaGGh~~~~~~~~~ll~~i~~~~~~~~iPviaaGGI~~~~~v~~al~~GA~gV~~GT~fl~t 201 (332)
+.+...|.+.|-+++. + . .....++.++++.+.. ++||++.|||++.+++.+++.+|||+|++||+++..
T Consensus 193 ~~gad~G~~lV~LD~~---~-~---~v~~e~V~~I~~~~~~-~iPV~vGGGIrs~Eda~~ll~aGAD~VVVGSAav~d 262 (286)
T 3vk5_A 193 HVARAFGFHMVYLYSR---N-E---HVPPEVVRHFRKGLGP-DQVLFVSGNVRSGRQVTEYLDSGADYVGFAGALEQP 262 (286)
T ss_dssp HHHHHTTCSEEEEECS---S-S---CCCHHHHHHHHHHSCT-TCEEEEESSCCSHHHHHHHHHTTCSEEEESGGGSST
T ss_pred HHHHHcCCCEEEEcCC---C-C---cCCHHHHHHHHHhcCC-CCCEEEEeCCCCHHHHHHHHHcCCCEEEECchhhcC
Confidence 3345678889988743 2 1 2346788888877521 589999999999999999999999999999999765
|
| >1ub3_A Aldolase protein; schiff base, deoxyribose phosphate, carbinolamine, structural genomics, riken structural genomics/proteomics initiative; HET: HPD; 1.40A {Thermus thermophilus} SCOP: c.1.10.1 PDB: 1j2w_A* | Back alignment and structure |
|---|
Probab=97.87 E-value=0.00022 Score=62.12 Aligned_cols=114 Identities=24% Similarity=0.239 Sum_probs=70.3
Q ss_pred HHHHHHhcCCcEEEEcc--CC----CcHHHHH---HHHh----CCCEEEEec--CCHHHHH----HHHHcCCCEEEEe-c
Q 020013 79 NIKAILSEKVAVLQVSW--GE----YSEELVL---EAHS----AGVKVVPQV--GSFDEAR----KAVNAGVDAIIVQ-G 138 (332)
Q Consensus 79 ~~~~~~~~~~~~I~~~~--g~----~~~~~i~---~~~~----~g~~v~~~v--~s~~~a~----~a~~~g~D~ivv~-G 138 (332)
..+.+++.|+|-|.+.. |. ....+.+ .+++ ..+|++... .+.++.. .+.++|+|+|... |
T Consensus 76 e~~~Ai~~GAdevd~vinig~~~~g~~~~v~~ei~~v~~a~~~~~lkvIlet~~l~~e~i~~a~~ia~eaGADfVKTsTG 155 (220)
T 1ub3_A 76 EAALACARGADEVDMVLHLGRAKAGDLDYLEAEVRAVREAVPQAVLKVILETGYFSPEEIARLAEAAIRGGADFLKTSTG 155 (220)
T ss_dssp HHHHHHHTTCSEEEEECCHHHHHTTCHHHHHHHHHHHHHHSTTSEEEEECCGGGSCHHHHHHHHHHHHHHTCSEEECCCS
T ss_pred HHHHHHHcCCCEEEecccchhhhCCCHHHHHHHHHHHHHHHcCCCceEEEecCCCCHHHHHHHHHHHHHhCCCEEEeCCC
Confidence 35677889999987753 21 1222222 2222 345655432 2555443 4568899999873 5
Q ss_pred CCCCcccCCCCchhhhHHHHHHHhCCCCCcEEeecCcCCHHHHHHHHHcCcc--eeeeccccc
Q 020013 139 REAGGHVIGQDGLISLLPMVVDLIGDRDIPIIAAGGIVDARGYVAALSLGAQ--GICLGTRFV 199 (332)
Q Consensus 139 ~eaGGh~~~~~~~~~ll~~i~~~~~~~~iPviaaGGI~~~~~v~~al~~GA~--gV~~GT~fl 199 (332)
+..||-+ .....++.++ +. .++||.++|||.+.+++.+++.+||+ |+-.|..++
T Consensus 156 f~~~gat---~~dv~~m~~~---vg-~~v~VkaaGGirt~~~al~~i~aGa~RiG~S~g~~I~ 211 (220)
T 1ub3_A 156 FGPRGAS---LEDVALLVRV---AQ-GRAQVKAAGGIRDRETALRMLKAGASRLGTSSGVALV 211 (220)
T ss_dssp SSSCCCC---HHHHHHHHHH---HT-TSSEEEEESSCCSHHHHHHHHHTTCSEEEETTHHHHH
T ss_pred CCCCCCC---HHHHHHHHHh---hC-CCCeEEEECCCCCHHHHHHHHHCCCcccchhHHHHHH
Confidence 5434322 2234444443 32 37999999999999999999999999 665555443
|
| >1thf_D HISF protein; thermophIle, TIM-barrel, histidine biosynthesis, lyase, phosphate-binding sites; 1.45A {Thermotoga maritima} SCOP: c.1.2.1 PDB: 2wjz_A 2a0n_A* 1gpw_A 1vh7_A 2rkx_A 3iio_A 3iip_A* 3iiv_A | Back alignment and structure |
|---|
Probab=97.85 E-value=2.3e-05 Score=69.62 Aligned_cols=78 Identities=22% Similarity=0.335 Sum_probs=60.0
Q ss_pred HHHHHHHHHcCCCEEEEecCCCCcccCCCCchhhhHHHHHHHhCCCCCcEEeecCcCCHHHHHHHHHcCcceeeeccccc
Q 020013 120 FDEARKAVNAGVDAIIVQGREAGGHVIGQDGLISLLPMVVDLIGDRDIPIIAAGGIVDARGYVAALSLGAQGICLGTRFV 199 (332)
Q Consensus 120 ~~~a~~a~~~g~D~ivv~G~eaGGh~~~~~~~~~ll~~i~~~~~~~~iPviaaGGI~~~~~v~~al~~GA~gV~~GT~fl 199 (332)
.+.++.+.+.|+|.|.+....+.+. +....+..+.++++.. ++|+++.|||.+++++.+++.+|||+|.+|+..+
T Consensus 33 ~~~a~~~~~~Gad~i~v~d~~~~~~--~~~~~~~~i~~i~~~~---~ipvi~~ggI~~~~~~~~~~~~Gad~V~lg~~~l 107 (253)
T 1thf_D 33 VELGKFYSEIGIDELVFLDITASVE--KRKTMLELVEKVAEQI---DIPFTVGGGIHDFETASELILRGADKVSINTAAV 107 (253)
T ss_dssp HHHHHHHHHTTCCEEEEEESSCSSS--HHHHHHHHHHHHHTTC---CSCEEEESSCCSHHHHHHHHHTTCSEEEESHHHH
T ss_pred HHHHHHHHHcCCCEEEEECCchhhc--CCcccHHHHHHHHHhC---CCCEEEeCCCCCHHHHHHHHHcCCCEEEEChHHH
Confidence 3556777889999998876543221 1123456667777655 7999999999999999999999999999999988
Q ss_pred cCc
Q 020013 200 ASE 202 (332)
Q Consensus 200 ~t~ 202 (332)
..+
T Consensus 108 ~~p 110 (253)
T 1thf_D 108 ENP 110 (253)
T ss_dssp HCT
T ss_pred hCh
Confidence 654
|
| >1qpo_A Quinolinate acid phosphoribosyl transferase; type II prtase, de novo NAD biosynthesis, PRPP, phosphoribos transferase; 2.40A {Mycobacterium tuberculosis H37RV} SCOP: c.1.17.1 d.41.2.1 PDB: 1qpn_A 1qpq_A* 1qpr_A* | Back alignment and structure |
|---|
Probab=97.85 E-value=5.6e-05 Score=68.40 Aligned_cols=91 Identities=9% Similarity=0.078 Sum_probs=66.9
Q ss_pred HHHHHHHHhCCC--EEEEecCCHHHHHHHHHcCCCEEEEecCCCCcccCCCCchhhhHHHHHHHhCCCCCcEEeecCcCC
Q 020013 100 EELVLEAHSAGV--KVVPQVGSFDEARKAVNAGVDAIIVQGREAGGHVIGQDGLISLLPMVVDLIGDRDIPIIAAGGIVD 177 (332)
Q Consensus 100 ~~~i~~~~~~g~--~v~~~v~s~~~a~~a~~~g~D~ivv~G~eaGGh~~~~~~~~~ll~~i~~~~~~~~iPviaaGGI~~ 177 (332)
.+-++.+++... ++...+.+.++++.+.++|+|+|.+.++ .+......++.+.... .++++.++||| +
T Consensus 182 ~~av~~ar~~~~~~~I~Vev~t~eea~eal~aGaD~I~LDn~-------~~~~~~~~v~~l~~~~--~~v~ieaSGGI-t 251 (284)
T 1qpo_A 182 VDALRAVRNAAPDLPCEVEVDSLEQLDAVLPEKPELILLDNF-------AVWQTQTAVQRRDSRA--PTVMLESSGGL-S 251 (284)
T ss_dssp HHHHHHHHHHCTTSCEEEEESSHHHHHHHGGGCCSEEEEETC-------CHHHHHHHHHHHHHHC--TTCEEEEESSC-C
T ss_pred HHHHHHHHHhCCCCCEEEEeCCHHHHHHHHHcCCCEEEECCC-------CHHHHHHHHHHhhccC--CCeEEEEECCC-C
Confidence 345666665433 8888999999999999999999999653 1111122333333222 25899999999 9
Q ss_pred HHHHHHHHHcCcceeeecccccc
Q 020013 178 ARGYVAALSLGAQGICLGTRFVA 200 (332)
Q Consensus 178 ~~~v~~al~~GA~gV~~GT~fl~ 200 (332)
++++.++...|+|.+.+|+..-.
T Consensus 252 ~~~i~~~a~tGVD~isvG~l~~~ 274 (284)
T 1qpo_A 252 LQTAATYAETGVDYLAVGALTHS 274 (284)
T ss_dssp TTTHHHHHHTTCSEEECGGGTSS
T ss_pred HHHHHHHHhcCCCEEEECHHHcC
Confidence 99999999999999999995443
|
| >2qr6_A IMP dehydrogenase/GMP reductase; NP_599840.1, G reductase domain, structural genomics, joint center for STR genomics, JCSG; HET: MSE; 1.50A {Corynebacterium glutamicum atcc 13032} | Back alignment and structure |
|---|
Probab=97.84 E-value=7.3e-05 Score=71.00 Aligned_cols=91 Identities=29% Similarity=0.448 Sum_probs=66.2
Q ss_pred HHHHHHHhCCCEEEEecC---CHHHHHHHHHcCCCEEEEecCC-CCcccCCCCchhhhHHHHHHHhCCCCCcEEeecCcC
Q 020013 101 ELVLEAHSAGVKVVPQVG---SFDEARKAVNAGVDAIIVQGRE-AGGHVIGQDGLISLLPMVVDLIGDRDIPIIAAGGIV 176 (332)
Q Consensus 101 ~~i~~~~~~g~~v~~~v~---s~~~a~~a~~~g~D~ivv~G~e-aGGh~~~~~~~~~ll~~i~~~~~~~~iPviaaGGI~ 176 (332)
++++++++.+.+++..+. ..+.++.+.+.|+|++.+.+.. ..+|. ++...+..+.++++.. ++||++ |||.
T Consensus 146 ~~i~~~~~~g~~v~~~v~~~~~~e~a~~~~~agad~i~i~~~~~~~~~~-~~~~~~~~i~~l~~~~---~~pvi~-ggi~ 220 (393)
T 2qr6_A 146 ERIAQVRDSGEIVAVRVSPQNVREIAPIVIKAGADLLVIQGTLISAEHV-NTGGEALNLKEFIGSL---DVPVIA-GGVN 220 (393)
T ss_dssp HHHHHHHHTTSCCEEEECTTTHHHHHHHHHHTTCSEEEEECSSCCSSCC-CC-----CHHHHHHHC---SSCEEE-ECCC
T ss_pred HHHHHHhhcCCeEEEEeCCccHHHHHHHHHHCCCCEEEEeCCccccccC-CCcccHHHHHHHHHhc---CCCEEE-CCcC
Confidence 456777788888877665 2344566678899999988654 23343 2222455677888876 799999 8888
Q ss_pred CHHHHHHHHHcCcceeeecc
Q 020013 177 DARGYVAALSLGAQGICLGT 196 (332)
Q Consensus 177 ~~~~v~~al~~GA~gV~~GT 196 (332)
+++++..++.+|||+|.+|+
T Consensus 221 t~e~a~~~~~~Gad~i~vg~ 240 (393)
T 2qr6_A 221 DYTTALHMMRTGAVGIIVGG 240 (393)
T ss_dssp SHHHHHHHHTTTCSEEEESC
T ss_pred CHHHHHHHHHcCCCEEEECC
Confidence 99999999999999999986
|
| >1vkf_A Glycerol uptake operon antiterminator-related Pro; struc genomics, joint center for structural genomics, JCSG, prote structure initiative; HET: CIT; 1.65A {Thermotoga maritima} SCOP: c.1.29.1 | Back alignment and structure |
|---|
Probab=97.84 E-value=0.00058 Score=57.57 Aligned_cols=131 Identities=17% Similarity=0.135 Sum_probs=91.4
Q ss_pred HHHHHHHHHHhhcCCcEEEEeec---CCCCHHHHHHHHhcCCcEEEEccCCCcHHHHHHHHhCCCEEEEec---CC--H-
Q 020013 50 YLRDLIRKTRSLTERPFGVGVVL---AFPHNENIKAILSEKVAVLQVSWGEYSEELVLEAHSAGVKVVPQV---GS--F- 120 (332)
Q Consensus 50 ~~~~~i~~~r~~~~~p~gvnl~~---~~~~~~~~~~~~~~~~~~I~~~~g~~~~~~i~~~~~~g~~v~~~v---~s--~- 120 (332)
.+.+.++++++. ++|.-+++=. -.+++..++.+...+++.|... ....++.+++.|+..+..+ .| .
T Consensus 44 ~L~~iv~~ik~~-gK~vivh~DlI~GLs~d~~ai~fL~~~~pdGIIsT----k~~~i~~Akk~GL~tIqR~FliDs~al~ 118 (188)
T 1vkf_A 44 NLKFHLKILKDR-GKTVFVDMDFVNGLGEGEEAILFVKKAGADGIITI----KPKNYVVAKKNGIPAVLRFFALDSKAVE 118 (188)
T ss_dssp THHHHHHHHHHT-TCEEEEEGGGEETCCSSHHHHHHHHHHTCSEEEES----CHHHHHHHHHTTCCEEEEEECCSHHHHH
T ss_pred HHHHHHHHHHHC-CCeEEEecCcccccCCCHHHHHHHHhcCCCEEEcC----cHHHHHHHHHcCCEEeeEEEEEEeHHHh
Confidence 477888888876 7777776422 1234566666655699999765 3567888999998776543 22 2
Q ss_pred HHHHHHHHcCCCEEEEecCCCCcccCCCCchhhhHHHHHHHhCCCCCcEEeecCcCCHHHHHHHHHcCcceeeecccccc
Q 020013 121 DEARKAVNAGVDAIIVQGREAGGHVIGQDGLISLLPMVVDLIGDRDIPIIAAGGIVDARGYVAALSLGAQGICLGTRFVA 200 (332)
Q Consensus 121 ~~a~~a~~~g~D~ivv~G~eaGGh~~~~~~~~~ll~~i~~~~~~~~iPviaaGGI~~~~~v~~al~~GA~gV~~GT~fl~ 200 (332)
...+......+|++=+- . +. ..|++.+.+ .++|+|+.|+|.|.+++.+ +++||++|..|+.=|+
T Consensus 119 ~~~~~I~~~kPD~iEiL-------P-g~-----v~p~~I~~v--~~~PiIaGGlI~t~edv~~-l~aGA~aIsTs~~~LW 182 (188)
T 1vkf_A 119 RGIEQIETLGVDVVEVL-------P-GA-----VAPKVARKI--PGRTVIAAGLVETEEEARE-ILKHVSAISTSSRILW 182 (188)
T ss_dssp HHHHHHHHHTCSEEEEE-------S-GG-----GHHHHHTTS--TTSEEEEESCCCSHHHHHH-HTTTSSEEEECCHHHH
T ss_pred hhhhhccccCCCeEeec-------C-CC-----chHHHHHHh--cCCCEEEECCcCCHHHHHH-HHCCCeEEEeCCHHHh
Confidence 23344556789987542 0 11 134444444 3899999999999999999 9999999999988665
Q ss_pred C
Q 020013 201 S 201 (332)
Q Consensus 201 t 201 (332)
.
T Consensus 183 ~ 183 (188)
T 1vkf_A 183 K 183 (188)
T ss_dssp T
T ss_pred C
Confidence 4
|
| >3tqv_A Nicotinate-nucleotide pyrophosphorylase; glycosyltransferase, transferase; 2.62A {Francisella tularensis subsp} | Back alignment and structure |
|---|
Probab=97.79 E-value=8.6e-05 Score=66.97 Aligned_cols=86 Identities=21% Similarity=0.279 Sum_probs=68.4
Q ss_pred HHHHHHHHh--CCCEEEEecCCHHHHHHHHHcCCCEEEEecCCCCcccCCCCchhhhHHHHHHHhCCCCCcEEeecCcCC
Q 020013 100 EELVLEAHS--AGVKVVPQVGSFDEARKAVNAGVDAIIVQGREAGGHVIGQDGLISLLPMVVDLIGDRDIPIIAAGGIVD 177 (332)
Q Consensus 100 ~~~i~~~~~--~g~~v~~~v~s~~~a~~a~~~g~D~ivv~G~eaGGh~~~~~~~~~ll~~i~~~~~~~~iPviaaGGI~~ 177 (332)
.+.++++++ ...++...|.|.++++++.++|+|+|.++++ . ...++++++.+.. ++++.++||| +
T Consensus 186 ~~Av~~ar~~~~~~~IeVEv~tl~ea~eAl~aGaD~I~LDn~-------~----~~~l~~av~~~~~-~v~ieaSGGI-t 252 (287)
T 3tqv_A 186 AKAVTKAKKLDSNKVVEVEVTNLDELNQAIAAKADIVMLDNF-------S----GEDIDIAVSIARG-KVALEVSGNI-D 252 (287)
T ss_dssp HHHHHHHHHHCTTSCEEEEESSHHHHHHHHHTTCSEEEEESC-------C----HHHHHHHHHHHTT-TCEEEEESSC-C
T ss_pred HHHHHHHHhhCCCCcEEEEeCCHHHHHHHHHcCCCEEEEcCC-------C----HHHHHHHHHhhcC-CceEEEECCC-C
Confidence 445566655 3578889999999999999999999999653 1 2345565555532 6899999999 9
Q ss_pred HHHHHHHHHcCcceeeecccc
Q 020013 178 ARGYVAALSLGAQGICLGTRF 198 (332)
Q Consensus 178 ~~~v~~al~~GA~gV~~GT~f 198 (332)
.+++.++...|+|.+.+|+-.
T Consensus 253 ~~~i~~~a~tGVD~IsvGalt 273 (287)
T 3tqv_A 253 RNSIVAIAKTGVDFISVGAIT 273 (287)
T ss_dssp TTTHHHHHTTTCSEEECSHHH
T ss_pred HHHHHHHHHcCCCEEEEChhh
Confidence 999999999999999998753
|
| >3paj_A Nicotinate-nucleotide pyrophosphorylase, carboxyl; TIM barrel, pyridin dicarboxylate, 5-phospho-alpha-D-ribose 1-diphosphate; 2.00A {Vibrio cholerae o1 biovar el tor} | Back alignment and structure |
|---|
Probab=97.73 E-value=0.00021 Score=65.43 Aligned_cols=85 Identities=18% Similarity=0.286 Sum_probs=67.6
Q ss_pred HHHHHHHHh--CCCEEEEecCCHHHHHHHHHcCCCEEEEecCCCCcccCCCCchhhhHHHHHHHhCCCCCcEEeecCcCC
Q 020013 100 EELVLEAHS--AGVKVVPQVGSFDEARKAVNAGVDAIIVQGREAGGHVIGQDGLISLLPMVVDLIGDRDIPIIAAGGIVD 177 (332)
Q Consensus 100 ~~~i~~~~~--~g~~v~~~v~s~~~a~~a~~~g~D~ivv~G~eaGGh~~~~~~~~~ll~~i~~~~~~~~iPviaaGGI~~ 177 (332)
.+-++.+++ ...++...|.|.++++++.++|+|+|.++++ +...++++++.+.. ++++.++||| |
T Consensus 219 ~~Av~~ar~~~p~~kIeVEVdtldea~eAl~aGaD~I~LDn~-----------~~~~l~~av~~l~~-~v~ieaSGGI-t 285 (320)
T 3paj_A 219 RQAISTAKQLNPGKPVEVETETLAELEEAISAGADIIMLDNF-----------SLEMMREAVKINAG-RAALENSGNI-T 285 (320)
T ss_dssp HHHHHHHHHHSTTSCEEEEESSHHHHHHHHHTTCSEEEEESC-----------CHHHHHHHHHHHTT-SSEEEEESSC-C
T ss_pred HHHHHHHHHhCCCCeEEEEECCHHHHHHHHHcCCCEEEECCC-----------CHHHHHHHHHHhCC-CCeEEEECCC-C
Confidence 344555554 2467888999999999999999999999653 13445666665542 6999999999 9
Q ss_pred HHHHHHHHHcCcceeeeccc
Q 020013 178 ARGYVAALSLGAQGICLGTR 197 (332)
Q Consensus 178 ~~~v~~al~~GA~gV~~GT~ 197 (332)
.+++.++...|+|.+.+|+.
T Consensus 286 ~~~I~~~a~tGVD~isvGal 305 (320)
T 3paj_A 286 LDNLKECAETGVDYISVGAL 305 (320)
T ss_dssp HHHHHHHHTTTCSEEECTHH
T ss_pred HHHHHHHHHcCCCEEEECce
Confidence 99999999999999999984
|
| >1h5y_A HISF; histidine biosynthesis, TIM-barrel; 2.0A {Pyrobaculum aerophilum} SCOP: c.1.2.1 | Back alignment and structure |
|---|
Probab=97.72 E-value=5.4e-05 Score=66.71 Aligned_cols=78 Identities=21% Similarity=0.357 Sum_probs=61.4
Q ss_pred CHHHHHHHHHcCCCEEEEecCCCCcccCCCCchhhhHHHHHHHhCCCCCcEEeecCcCCHHHHHHHHHcCcceeeecccc
Q 020013 119 SFDEARKAVNAGVDAIIVQGREAGGHVIGQDGLISLLPMVVDLIGDRDIPIIAAGGIVDARGYVAALSLGAQGICLGTRF 198 (332)
Q Consensus 119 s~~~a~~a~~~g~D~ivv~G~eaGGh~~~~~~~~~ll~~i~~~~~~~~iPviaaGGI~~~~~v~~al~~GA~gV~~GT~f 198 (332)
..+.++.+.+.|+|+|.+......+. .....+.++.++++.. ++|+++.|||.+++++.+++.+|||+|.+|+.+
T Consensus 35 ~~~~a~~~~~~G~d~i~v~~~~~~~~--~~~~~~~~i~~i~~~~---~ipvi~~g~i~~~~~~~~~~~~Gad~V~i~~~~ 109 (253)
T 1h5y_A 35 PVEMAVRYEEEGADEIAILDITAAPE--GRATFIDSVKRVAEAV---SIPVLVGGGVRSLEDATTLFRAGADKVSVNTAA 109 (253)
T ss_dssp HHHHHHHHHHTTCSCEEEEECCCCTT--THHHHHHHHHHHHHHC---SSCEEEESSCCSHHHHHHHHHHTCSEEEESHHH
T ss_pred HHHHHHHHHHcCCCEEEEEeCCcccc--CCcccHHHHHHHHHhc---CCCEEEECCCCCHHHHHHHHHcCCCEEEEChHH
Confidence 45677788899999998876543322 1123466777887776 799999999999999999999999999999988
Q ss_pred ccC
Q 020013 199 VAS 201 (332)
Q Consensus 199 l~t 201 (332)
+..
T Consensus 110 ~~~ 112 (253)
T 1h5y_A 110 VRN 112 (253)
T ss_dssp HHC
T ss_pred hhC
Confidence 754
|
| >3l0g_A Nicotinate-nucleotide pyrophosphorylase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ALS collaborative crystallography; 2.05A {Ehrlichia chaffeensis} | Back alignment and structure |
|---|
Probab=97.67 E-value=0.00027 Score=63.93 Aligned_cols=86 Identities=14% Similarity=0.217 Sum_probs=68.5
Q ss_pred HHHHHHHHh--CCCEEEEecCCHHHHHHHHHcCCCEEEEecCCCCcccCCCCchhhhHHHHHHHhCCCCCcEEeecCcCC
Q 020013 100 EELVLEAHS--AGVKVVPQVGSFDEARKAVNAGVDAIIVQGREAGGHVIGQDGLISLLPMVVDLIGDRDIPIIAAGGIVD 177 (332)
Q Consensus 100 ~~~i~~~~~--~g~~v~~~v~s~~~a~~a~~~g~D~ivv~G~eaGGh~~~~~~~~~ll~~i~~~~~~~~iPviaaGGI~~ 177 (332)
.+.++++++ ...++...|.|.+|++.+.++|+|.|.++++. ...++++++.+.. ++.+.++||| +
T Consensus 195 ~~Av~~ar~~~p~~kIeVEv~tl~e~~eAl~aGaDiImLDn~s-----------~~~l~~av~~~~~-~v~leaSGGI-t 261 (300)
T 3l0g_A 195 TLAIQRLRKNLKNEYIAIECDNISQVEESLSNNVDMILLDNMS-----------ISEIKKAVDIVNG-KSVLEVSGCV-N 261 (300)
T ss_dssp HHHHHHHHHHSSSCCEEEEESSHHHHHHHHHTTCSEEEEESCC-----------HHHHHHHHHHHTT-SSEEEEESSC-C
T ss_pred HHHHHHHHHhCCCCCEEEEECCHHHHHHHHHcCCCEEEECCCC-----------HHHHHHHHHhhcC-ceEEEEECCC-C
Confidence 344555554 35788899999999999999999999997641 2445555555543 6899999999 8
Q ss_pred HHHHHHHHHcCcceeeecccc
Q 020013 178 ARGYVAALSLGAQGICLGTRF 198 (332)
Q Consensus 178 ~~~v~~al~~GA~gV~~GT~f 198 (332)
.+++.++...|+|.+.+|+..
T Consensus 262 ~~~i~~~A~tGVD~IsvGalt 282 (300)
T 3l0g_A 262 IRNVRNIALTGVDYISIGCIT 282 (300)
T ss_dssp TTTHHHHHTTTCSEEECGGGT
T ss_pred HHHHHHHHHcCCCEEEeCccc
Confidence 999999999999999999753
|
| >2jbm_A Nicotinate-nucleotide pyrophosphorylase; NAD, enzyme, metabolism, transferase, polymorphism, glycosyltransferase, pyridine nucleotide biosynthesis; HET: SRT; 2.0A {Homo sapiens} PDB: 3lar_A | Back alignment and structure |
|---|
Probab=97.67 E-value=9.3e-05 Score=67.57 Aligned_cols=76 Identities=21% Similarity=0.229 Sum_probs=59.9
Q ss_pred CEEEEecCCHHHHHHHHHcCCCEEEEecCCCCcccCCCCchhhhHHHHHHHhC--CCCCcEEeecCcCCHHHHHHHHHcC
Q 020013 111 VKVVPQVGSFDEARKAVNAGVDAIIVQGREAGGHVIGQDGLISLLPMVVDLIG--DRDIPIIAAGGIVDARGYVAALSLG 188 (332)
Q Consensus 111 ~~v~~~v~s~~~a~~a~~~g~D~ivv~G~eaGGh~~~~~~~~~ll~~i~~~~~--~~~iPviaaGGI~~~~~v~~al~~G 188 (332)
.++...+.+.++++.+.+.|+|+|.+... + ...+.++++.++ ..++||.++||| |.+++.++...|
T Consensus 198 ~~i~vev~tlee~~~A~~aGaD~I~ld~~-------~----~~~l~~~v~~l~~~~~~~~I~ASGGI-t~~ni~~~~~aG 265 (299)
T 2jbm_A 198 LKVEVECSSLQEAVQAAEAGADLVLLDNF-------K----PEELHPTATVLKAQFPSVAVEASGGI-TLDNLPQFCGPH 265 (299)
T ss_dssp SCEEEEESSHHHHHHHHHTTCSEEEEESC-------C----HHHHHHHHHHHHHHCTTSEEEEESSC-CTTTHHHHCCTT
T ss_pred CeEEEecCCHHHHHHHHHcCCCEEEECCC-------C----HHHHHHHHHHhhccCCCeeEEEECCC-CHHHHHHHHHCC
Confidence 68889999999999999999999998542 1 233333333331 125899999999 999999999999
Q ss_pred cceeeecccc
Q 020013 189 AQGICLGTRF 198 (332)
Q Consensus 189 A~gV~~GT~f 198 (332)
+|++.+|+.+
T Consensus 266 aD~i~vGs~i 275 (299)
T 2jbm_A 266 IDVISMGMLT 275 (299)
T ss_dssp CCEEECTHHH
T ss_pred CCEEEEChhh
Confidence 9999999954
|
| >1qap_A Quinolinic acid phosphoribosyltransferase; glycosyltransferase, NAD biosynthesis; HET: NTM; 2.80A {Salmonella typhimurium} SCOP: c.1.17.1 d.41.2.1 | Back alignment and structure |
|---|
Probab=97.66 E-value=0.00013 Score=66.37 Aligned_cols=85 Identities=21% Similarity=0.225 Sum_probs=65.5
Q ss_pred HHHHHHHhC--CCEEEEecCCHHHHHHHHHcCCCEEEEecCCCCcccCCCCchhhhHHHHHHHhCCCCCcEEeecCcCCH
Q 020013 101 ELVLEAHSA--GVKVVPQVGSFDEARKAVNAGVDAIIVQGREAGGHVIGQDGLISLLPMVVDLIGDRDIPIIAAGGIVDA 178 (332)
Q Consensus 101 ~~i~~~~~~--g~~v~~~v~s~~~a~~a~~~g~D~ivv~G~eaGGh~~~~~~~~~ll~~i~~~~~~~~iPviaaGGI~~~ 178 (332)
+-++.+++. ..++...+.+.++++.+.+.|+|+|.+.. .+...+.++++.+.. ++|+.++||| |.
T Consensus 197 ~ai~~~r~~~~~~kI~vev~tlee~~eA~~aGaD~I~ld~-----------~~~e~l~~~v~~~~~-~~~I~ASGGI-t~ 263 (296)
T 1qap_A 197 QAVEKAFWLHPDVPVEVEVENLDELDDALKAGADIIMLDN-----------FNTDQMREAVKRVNG-QARLEVSGNV-TA 263 (296)
T ss_dssp HHHHHHHHHSTTSCEEEEESSHHHHHHHHHTTCSEEEESS-----------CCHHHHHHHHHTTCT-TCCEEECCCS-CH
T ss_pred HHHHHHHHhCCCCcEEEEeCCHHHHHHHHHcCCCEEEECC-----------CCHHHHHHHHHHhCC-CCeEEEECCC-CH
Confidence 334445442 22788899999999999999999998843 123455565555532 6999999999 99
Q ss_pred HHHHHHHHcCcceeeecccc
Q 020013 179 RGYVAALSLGAQGICLGTRF 198 (332)
Q Consensus 179 ~~v~~al~~GA~gV~~GT~f 198 (332)
+++.++...|+|++.+|+..
T Consensus 264 ~~i~~~a~~GvD~isvGsli 283 (296)
T 1qap_A 264 ETLREFAETGVDFISVGALT 283 (296)
T ss_dssp HHHHHHHHTTCSEEECSHHH
T ss_pred HHHHHHHHcCCCEEEEeHHH
Confidence 99999999999999999853
|
| >3cwo_X Beta/alpha-barrel protein based on 1THF and 1TMY; XRAY, CHEY, HISF, half barrel, de novo protein; 3.10A {Thermotoga maritima} PDB: 2lle_A | Back alignment and structure |
|---|
Probab=97.66 E-value=0.00031 Score=60.65 Aligned_cols=89 Identities=24% Similarity=0.300 Sum_probs=64.3
Q ss_pred HHHHHHHHcCCCEEEEecC-CCCcccCCCCchhhhHHHHHHHhCCCCCcEEeecCcCCHHHHHHHHHcCcceeeeccccc
Q 020013 121 DEARKAVNAGVDAIIVQGR-EAGGHVIGQDGLISLLPMVVDLIGDRDIPIIAAGGIVDARGYVAALSLGAQGICLGTRFV 199 (332)
Q Consensus 121 ~~a~~a~~~g~D~ivv~G~-eaGGh~~~~~~~~~ll~~i~~~~~~~~iPviaaGGI~~~~~v~~al~~GA~gV~~GT~fl 199 (332)
+.++.....++..+++.+. +.|... +. ...++.++.... ++|+|+.||+++++++.+++..||+||++||+|.
T Consensus 134 ~~i~~~~~~~~~~vli~~~~~~g~~~-g~--~~~~i~~~~~~~---~~Pvia~~g~~~~~~~~~~~~~G~~~~~vg~a~~ 207 (237)
T 3cwo_X 134 DWVVEVEKRGAGEILLTSIDRDGTKS-GY--DTEMIRFVRPLT---TLPIIASGGAGKMEHFLEAFLAGADAALAASVFH 207 (237)
T ss_dssp HHHHHHHHHTCSEEEEEETTTTTCCS-CC--CHHHHHHHGGGC---CSCEEEESCCCSHHHHHHHHHHTCSEEEESHHHH
T ss_pred HHHHHHhhcCCCeEEEEecCCCCccc-cc--cHHHHHHHHHhc---CCCEEecCCCCCHHHHHHHHHcCcHHHhhhHHHH
Confidence 4456667778887887774 333221 22 266777777655 7999999999999999999999999999999998
Q ss_pred cCccCCCCHHHHHHHhcC
Q 020013 200 ASEESYAHPEYKRKLVEM 217 (332)
Q Consensus 200 ~t~Es~~~~~~k~~~~~~ 217 (332)
..+. .-...++.+.+.
T Consensus 208 ~~~~--~~~~~~~~l~~~ 223 (237)
T 3cwo_X 208 FREI--DVRELKEYLKKH 223 (237)
T ss_dssp TTSS--CHHHHHHHHHTT
T ss_pred cCCC--CHHHHHHHHHHC
Confidence 5543 244556665543
|
| >3aty_A Tcoye, prostaglandin F2A synthase; alpha/beta barrel, oxidoreductase, flavin mononucleotide; HET: FMN; 1.70A {Trypanosoma cruzi} PDB: 3atz_A* | Back alignment and structure |
|---|
Probab=97.63 E-value=0.00038 Score=65.68 Aligned_cols=72 Identities=13% Similarity=0.085 Sum_probs=54.3
Q ss_pred HHHHHHcCCCEEEEecCCCCcccCCCCchhhhHHHHHHHhCCCCCcEEeecCcCCHHHHHHHHHcC-cceeeeccccccC
Q 020013 123 ARKAVNAGVDAIIVQGREAGGHVIGQDGLISLLPMVVDLIGDRDIPIIAAGGIVDARGYVAALSLG-AQGICLGTRFVAS 201 (332)
Q Consensus 123 a~~a~~~g~D~ivv~G~eaGGh~~~~~~~~~ll~~i~~~~~~~~iPviaaGGI~~~~~v~~al~~G-A~gV~~GT~fl~t 201 (332)
++.+.+.|+|+|-+.+..... . . .. .. +.++++.+ ++|||+.||| +++++.++++.| ||.|.+|+.|+..
T Consensus 272 a~~l~~~Gvd~i~v~~~~~~~-~-~-~~-~~-~~~ir~~~---~iPvi~~G~i-t~~~a~~~l~~g~aD~V~igR~~l~~ 342 (379)
T 3aty_A 272 CKKIEPLSLAYLHYLRGDMVN-Q-Q-IG-DV-VAWVRGSY---SGVKISNLRY-DFEEADQQIREGKVDAVAFGAKFIAN 342 (379)
T ss_dssp HHHHGGGCCSEEEEECSCTTS-C-C-CC-CH-HHHHHTTC---CSCEEEESSC-CHHHHHHHHHTTSCSEEEESHHHHHC
T ss_pred HHHHHHhCCCEEEEcCCCcCC-C-C-cc-HH-HHHHHHHC---CCcEEEECCC-CHHHHHHHHHcCCCeEEEecHHHHhC
Confidence 445667899999996531101 1 1 11 24 66777766 7999999999 999999999998 9999999999986
Q ss_pred cc
Q 020013 202 EE 203 (332)
Q Consensus 202 ~E 203 (332)
++
T Consensus 343 P~ 344 (379)
T 3aty_A 343 PD 344 (379)
T ss_dssp TT
T ss_pred cH
Confidence 43
|
| >3gnn_A Nicotinate-nucleotide pyrophosphorylase; decode biostructures, ssgcid, niaid, SBRI, UWPPG, glycosyltransferase, transferase, structural genomics; 2.25A {Burkholderia pseudomallei} | Back alignment and structure |
|---|
Probab=97.60 E-value=0.00021 Score=64.77 Aligned_cols=85 Identities=19% Similarity=0.290 Sum_probs=65.8
Q ss_pred HHHHHHHHhC--CCEEEEecCCHHHHHHHHHcCCCEEEEecCCCCcccCCCCchhhhHHHHHHHhCCCCCcEEeecCcCC
Q 020013 100 EELVLEAHSA--GVKVVPQVGSFDEARKAVNAGVDAIIVQGREAGGHVIGQDGLISLLPMVVDLIGDRDIPIIAAGGIVD 177 (332)
Q Consensus 100 ~~~i~~~~~~--g~~v~~~v~s~~~a~~a~~~g~D~ivv~G~eaGGh~~~~~~~~~ll~~i~~~~~~~~iPviaaGGI~~ 177 (332)
.+-++.+++. ..++...|.|.++++++.++|+|+|.+++.. ...+.++++.+.. ++++.++||| |
T Consensus 197 ~~Av~~~r~~~p~~~ieVEvdtlde~~eAl~aGaD~I~LDn~~-----------~~~l~~av~~i~~-~v~ieaSGGI-~ 263 (298)
T 3gnn_A 197 GEALDAAFALNAEVPVQIEVETLDQLRTALAHGARSVLLDNFT-----------LDMMRDAVRVTEG-RAVLEVSGGV-N 263 (298)
T ss_dssp HHHHHHHHHHC--CCCEEEESSHHHHHHHHHTTCEEEEEESCC-----------HHHHHHHHHHHTT-SEEEEEESSC-S
T ss_pred HHHHHHHHHhCCCCCEEEEeCCHHHHHHHHHcCCCEEEECCCC-----------HHHHHHHHHHhCC-CCeEEEEcCC-C
Confidence 3445555543 4677888999999999999999999997631 2334454444422 6899999999 9
Q ss_pred HHHHHHHHHcCcceeeeccc
Q 020013 178 ARGYVAALSLGAQGICLGTR 197 (332)
Q Consensus 178 ~~~v~~al~~GA~gV~~GT~ 197 (332)
.+++.++...|+|.+.+|+.
T Consensus 264 ~~~i~~~a~tGVD~isvG~l 283 (298)
T 3gnn_A 264 FDTVRAIAETGVDRISIGAL 283 (298)
T ss_dssp TTTHHHHHHTTCSEEECGGG
T ss_pred HHHHHHHHHcCCCEEEECCe
Confidence 99999999999999999995
|
| >3r12_A Deoxyribose-phosphate aldolase; TIM beta/alpha-barrel, structural genomics, joint center for structural genomics, JCSG; HET: MSE CIT; 1.75A {Thermotoga maritima} SCOP: c.1.10.1 PDB: 1o0y_A* 3r13_A* | Back alignment and structure |
|---|
Probab=97.59 E-value=0.0013 Score=58.39 Aligned_cols=105 Identities=20% Similarity=0.241 Sum_probs=64.6
Q ss_pred HHHHHhcCCcEEEEcc-------CCCcHHH---HHHHHh-C-C--CEEEEecC--CHHHHH----HHHHcCCCEEEE-ec
Q 020013 80 IKAILSEKVAVLQVSW-------GEYSEEL---VLEAHS-A-G--VKVVPQVG--SFDEAR----KAVNAGVDAIIV-QG 138 (332)
Q Consensus 80 ~~~~~~~~~~~I~~~~-------g~~~~~~---i~~~~~-~-g--~~v~~~v~--s~~~a~----~a~~~g~D~ivv-~G 138 (332)
.+.+++.|+|-|.+.. |. ...+ ++.+++ . + +|++.... +.++.. .+.++|+|+|.. .|
T Consensus 117 a~~Ai~~GAdEIDmViNig~lk~g~-~~~v~~eI~~v~~a~~~~~lKVIlEt~~Lt~eei~~A~~ia~eaGADfVKTSTG 195 (260)
T 3r12_A 117 AIFAVESGADEIDMVINVGMLKAKE-WEYVYEDIRSVVESVKGKVVKVIIETCYLDTEEKIAACVISKLAGAHFVKTSTG 195 (260)
T ss_dssp HHHHHHHTCSEEEEECCHHHHHTTC-HHHHHHHHHHHHHHTTTSEEEEECCGGGCCHHHHHHHHHHHHHTTCSEEECCCS
T ss_pred HHHHHHcCCCEEEEEeehhhhcccc-HHHHHHHHHHHHHhcCCCcEEEEEeCCCCCHHHHHHHHHHHHHhCcCEEEcCCC
Confidence 4567788999887652 22 1222 223332 2 3 34443322 444443 356899999986 34
Q ss_pred CCCCcccCCCCchhhhHHHHHHHhCCCCCcEEeecCcCCHHHHHHHHHcCccee
Q 020013 139 REAGGHVIGQDGLISLLPMVVDLIGDRDIPIIAAGGIVDARGYVAALSLGAQGI 192 (332)
Q Consensus 139 ~eaGGh~~~~~~~~~ll~~i~~~~~~~~iPviaaGGI~~~~~v~~al~~GA~gV 192 (332)
+..+| .++.-+..+++.++ .+++|-++|||.+.+++.+++.+||+-+
T Consensus 196 f~~~G------AT~edV~lm~~~vg-~~v~VKaAGGIrt~~~al~mi~aGA~Ri 242 (260)
T 3r12_A 196 FGTGG------ATAEDVHLMKWIVG-DEMGVKASGGIRTFEDAVKMIMYGADRI 242 (260)
T ss_dssp SSSCC------CCHHHHHHHHHHHC-TTSEEEEESSCCSHHHHHHHHHTTCSEE
T ss_pred CCCCC------CCHHHHHHHHHHhC-CCceEEEeCCCCCHHHHHHHHHcCCcee
Confidence 43333 22334444444443 3799999999999999999999999943
|
| >2y88_A Phosphoribosyl isomerase A; aromatic amino acid biosynthesis, TIM-barrel, His biosynthesis, tryptophan biosynthesis; HET: 2ER; 1.33A {Mycobacterium tuberculosis} PDB: 2y89_A 2y85_A* | Back alignment and structure |
|---|
Probab=97.58 E-value=0.00011 Score=64.85 Aligned_cols=78 Identities=26% Similarity=0.305 Sum_probs=60.6
Q ss_pred CHHHHHHHHHcCCCEEEEecCCCCcccCCCCchhhhHHHHHHHhCCCCCcEEeecCcCCHHHHHHHHHcCcceeeecccc
Q 020013 119 SFDEARKAVNAGVDAIIVQGREAGGHVIGQDGLISLLPMVVDLIGDRDIPIIAAGGIVDARGYVAALSLGAQGICLGTRF 198 (332)
Q Consensus 119 s~~~a~~a~~~g~D~ivv~G~eaGGh~~~~~~~~~ll~~i~~~~~~~~iPviaaGGI~~~~~v~~al~~GA~gV~~GT~f 198 (332)
..+.++.+.+.|+|.|-+...++ +..+.... ..+.++++.. ++|+++.|||.+++++..++.+|||+|.+|+..
T Consensus 33 ~~~~a~~~~~~Gad~i~v~~~d~--~~~~~~~~-~~i~~i~~~~---~ipv~v~ggi~~~~~~~~~l~~Gad~V~lg~~~ 106 (244)
T 2y88_A 33 AVDAALGWQRDGAEWIHLVDLDA--AFGRGSNH-ELLAEVVGKL---DVQVELSGGIRDDESLAAALATGCARVNVGTAA 106 (244)
T ss_dssp HHHHHHHHHHTTCSEEEEEEHHH--HTTSCCCH-HHHHHHHHHC---SSEEEEESSCCSHHHHHHHHHTTCSEEEECHHH
T ss_pred HHHHHHHHHHcCCCEEEEEcCcc--cccCCChH-HHHHHHHHhc---CCcEEEECCCCCHHHHHHHHHcCCCEEEECchH
Confidence 34567778889999999864321 11122233 7788888876 799999999999999999999999999999998
Q ss_pred ccCc
Q 020013 199 VASE 202 (332)
Q Consensus 199 l~t~ 202 (332)
+..+
T Consensus 107 l~~p 110 (244)
T 2y88_A 107 LENP 110 (244)
T ss_dssp HHCH
T ss_pred hhCh
Confidence 7654
|
| >1wa3_A 2-keto-3-deoxy-6-phosphogluconate aldolase; KDPG, pyruvate, lyase; 1.9A {Thermotoga maritima} SCOP: c.1.10.1 PDB: 1vlw_A | Back alignment and structure |
|---|
Probab=97.55 E-value=0.00093 Score=57.17 Aligned_cols=100 Identities=20% Similarity=0.308 Sum_probs=70.7
Q ss_pred HHHHHHHhcCCcEEEEccCCCc-HHHHHHHHhC---CCEEEE-ecCCHHHHHHHHHcCCCEEEEecCCCCcccCCCCchh
Q 020013 78 ENIKAILSEKVAVLQVSWGEYS-EELVLEAHSA---GVKVVP-QVGSFDEARKAVNAGVDAIIVQGREAGGHVIGQDGLI 152 (332)
Q Consensus 78 ~~~~~~~~~~~~~I~~~~g~~~-~~~i~~~~~~---g~~v~~-~v~s~~~a~~a~~~g~D~ivv~G~eaGGh~~~~~~~~ 152 (332)
+.++.+.+.|+++|.+++..+. .+.++.+++. +..+.. .+.++++++.+.+.|+|+| +. + +. . .
T Consensus 26 ~~~~~~~~~G~~~iev~~~~~~~~~~i~~ir~~~~~~~~ig~~~v~~~~~~~~a~~~Gad~i-v~-~---~~---~---~ 94 (205)
T 1wa3_A 26 EKALAVFEGGVHLIEITFTVPDADTVIKELSFLKEKGAIIGAGTVTSVEQCRKAVESGAEFI-VS-P---HL---D---E 94 (205)
T ss_dssp HHHHHHHHTTCCEEEEETTSTTHHHHHHHTHHHHHTTCEEEEESCCSHHHHHHHHHHTCSEE-EC-S---SC---C---H
T ss_pred HHHHHHHHCCCCEEEEeCCChhHHHHHHHHHHHCCCCcEEEecccCCHHHHHHHHHcCCCEE-Ec-C---CC---C---H
Confidence 3456667789999999876532 3456666653 456555 5689999999999999999 41 1 11 1 2
Q ss_pred hhHHHHHHHhCCCCCcEEeecCcCCHHHHHHHHHcCcceeee
Q 020013 153 SLLPMVVDLIGDRDIPIIAAGGIVDARGYVAALSLGAQGICL 194 (332)
Q Consensus 153 ~ll~~i~~~~~~~~iPviaaGGI~~~~~v~~al~~GA~gV~~ 194 (332)
.++....+ . ++|++. |+.|+.++..++.+|+|.|-+
T Consensus 95 ~~~~~~~~-~---g~~vi~--g~~t~~e~~~a~~~Gad~vk~ 130 (205)
T 1wa3_A 95 EISQFCKE-K---GVFYMP--GVMTPTELVKAMKLGHTILKL 130 (205)
T ss_dssp HHHHHHHH-H---TCEEEC--EECSHHHHHHHHHTTCCEEEE
T ss_pred HHHHHHHH-c---CCcEEC--CcCCHHHHHHHHHcCCCEEEE
Confidence 34444333 3 799987 777999999999999998875
|
| >1vzw_A Phosphoribosyl isomerase A; histidine biosynthesis, tryptophan biosynthesis; 1.8A {Streptomyces coelicolor} SCOP: c.1.2.1 PDB: 2vep_A 2x30_A | Back alignment and structure |
|---|
Probab=97.53 E-value=0.00012 Score=64.59 Aligned_cols=77 Identities=25% Similarity=0.321 Sum_probs=59.7
Q ss_pred HHHHHHHHHcCCCEEEEecCCCCcccCCCCchhhhHHHHHHHhCCCCCcEEeecCcCCHHHHHHHHHcCcceeeeccccc
Q 020013 120 FDEARKAVNAGVDAIIVQGREAGGHVIGQDGLISLLPMVVDLIGDRDIPIIAAGGIVDARGYVAALSLGAQGICLGTRFV 199 (332)
Q Consensus 120 ~~~a~~a~~~g~D~ivv~G~eaGGh~~~~~~~~~ll~~i~~~~~~~~iPviaaGGI~~~~~v~~al~~GA~gV~~GT~fl 199 (332)
.+.++.+.+.|+|.|-+...+. +..+.... ..+.++++.. ++|+++.|||.+++++..++.+|||+|.+|+..+
T Consensus 35 ~~~a~~~~~~Gad~i~v~~~d~--~~~~~~~~-~~i~~i~~~~---~ipv~v~ggI~~~~~~~~~l~~Gad~V~lg~~~l 108 (244)
T 1vzw_A 35 LEAALAWQRSGAEWLHLVDLDA--AFGTGDNR-ALIAEVAQAM---DIKVELSGGIRDDDTLAAALATGCTRVNLGTAAL 108 (244)
T ss_dssp HHHHHHHHHTTCSEEEEEEHHH--HHTSCCCH-HHHHHHHHHC---SSEEEEESSCCSHHHHHHHHHTTCSEEEECHHHH
T ss_pred HHHHHHHHHcCCCEEEEecCch--hhcCCChH-HHHHHHHHhc---CCcEEEECCcCCHHHHHHHHHcCCCEEEECchHh
Confidence 4566777889999998865321 11122234 7788888776 7999999999999999999999999999999887
Q ss_pred cCc
Q 020013 200 ASE 202 (332)
Q Consensus 200 ~t~ 202 (332)
..+
T Consensus 109 ~~p 111 (244)
T 1vzw_A 109 ETP 111 (244)
T ss_dssp HCH
T ss_pred hCH
Confidence 653
|
| >3c2e_A Nicotinate-nucleotide pyrophosphorylase; qprtase, prtase, BNA6, mechanism, cytoplasm, glycosyltransferase, nucleus; 1.90A {Saccharomyces cerevisiae} PDB: 3c2f_A* 3c2o_A* 3c2v_A* 3c2r_A* | Back alignment and structure |
|---|
Probab=97.50 E-value=8.9e-05 Score=67.54 Aligned_cols=76 Identities=21% Similarity=0.225 Sum_probs=49.0
Q ss_pred CEEEEecCCHHHHHHHHHcCCCEEEEecCCCCcccCCCCchhhhHHHHHHHhCC-----CCCcEEeecCcCCHHHHHHHH
Q 020013 111 VKVVPQVGSFDEARKAVNAGVDAIIVQGREAGGHVIGQDGLISLLPMVVDLIGD-----RDIPIIAAGGIVDARGYVAAL 185 (332)
Q Consensus 111 ~~v~~~v~s~~~a~~a~~~g~D~ivv~G~eaGGh~~~~~~~~~ll~~i~~~~~~-----~~iPviaaGGI~~~~~v~~al 185 (332)
.++...+.+.++++.+.+.|+|+|.+... + ...+.++++.++. .++|+.++||| |.+++.++.
T Consensus 200 ~~i~vev~tlee~~~A~~aGaD~I~ld~~-------~----~~~l~~~v~~l~~~~~g~~~v~I~ASGGI-t~~ni~~~~ 267 (294)
T 3c2e_A 200 VKIEVECLSEDEATEAIEAGADVIMLDNF-------K----GDGLKMCAQSLKNKWNGKKHFLLECSGGL-NLDNLEEYL 267 (294)
T ss_dssp SCEEEECSSSHHHHHHHHHTCSEEECCC--------------------------------CCEEEEECCC-CC------C
T ss_pred CeEEEecCCHHHHHHHHHcCCCEEEECCC-------C----HHHHHHHHHHhcccccCCCCeEEEEECCC-CHHHHHHHH
Confidence 68888999999999999999999988432 1 1223333333321 13899999999 999999999
Q ss_pred HcCcceeeecccc
Q 020013 186 SLGAQGICLGTRF 198 (332)
Q Consensus 186 ~~GA~gV~~GT~f 198 (332)
..|+|++.+|+..
T Consensus 268 ~~GvD~i~vGs~i 280 (294)
T 3c2e_A 268 CDDIDIYSTSSIH 280 (294)
T ss_dssp CCSCSEEECGGGT
T ss_pred HcCCCEEEEechh
Confidence 9999999999985
|
| >1eix_A Orotidine 5'-monophosphate decarboxylase; alpha-beta-barrel, protein-inhibitor complex, homodimer, lyase; HET: BMQ; 2.50A {Escherichia coli} SCOP: c.1.2.3 PDB: 1jjk_A* 1l2u_A | Back alignment and structure |
|---|
Probab=97.41 E-value=8.1e-05 Score=66.08 Aligned_cols=140 Identities=14% Similarity=0.093 Sum_probs=79.5
Q ss_pred HHHHHHhh-cCCcEEEEeecCCCC--HHHHHHHHhcCCcEEEEccCCCc---HHHHHHHHhCCC---EEEE-ec-CCH--
Q 020013 54 LIRKTRSL-TERPFGVGVVLAFPH--NENIKAILSEKVAVLQVSWGEYS---EELVLEAHSAGV---KVVP-QV-GSF-- 120 (332)
Q Consensus 54 ~i~~~r~~-~~~p~gvnl~~~~~~--~~~~~~~~~~~~~~I~~~~g~~~---~~~i~~~~~~g~---~v~~-~v-~s~-- 120 (332)
.++.+|+. +..++-+.++ ..+. ..+++.+.+.|+|.|.+|.-... ...++.+++.|. .++. .+ ++.
T Consensus 57 ~v~~lr~~~~~v~lD~kl~-Dip~t~~~~i~~~~~~Gad~vTvH~~~g~~~l~~~~~~~~~~G~~~~~~l~v~~~ts~~~ 135 (245)
T 1eix_A 57 FVRELQQRGFDIFLDLKFH-DIPNTAAHAVAAAADLGVWMVNVHASGGARMMTAAREALVPFGKDAPLLIAVTVLTSMEA 135 (245)
T ss_dssp HHHHHHHTTCCEEEEEEEC-SCHHHHHHHHHHHHHHTCSEEEEBGGGCHHHHHHHHHTTGGGGGGCCEEEEECSCTTCCH
T ss_pred HHHHHHHCCCcEEEEeecc-ccHHHHHHHHHHHHhCCCCEEEEeccCCHHHHHHHHHHHHHcCCCCCcEEEEEecCCCCH
Confidence 45666665 4556667766 3331 13677788899999999942211 234444555565 3442 22 222
Q ss_pred HHHHHHHHcCC-----CEEEEe---cCCCCcccCCCCchhhhHHHHHHHhCCCCCcEEeecCcCCHH-----------HH
Q 020013 121 DEARKAVNAGV-----DAIIVQ---GREAGGHVIGQDGLISLLPMVVDLIGDRDIPIIAAGGIVDAR-----------GY 181 (332)
Q Consensus 121 ~~a~~a~~~g~-----D~ivv~---G~eaGGh~~~~~~~~~ll~~i~~~~~~~~iPviaaGGI~~~~-----------~v 181 (332)
++.+ +.+. |.|+.- ..+.|+.. --.+... +.++++..+ +.+++.+||| +++ ++
T Consensus 136 ~~l~---~~~~~~~~~d~Vl~ma~~~~~~G~~g-~V~~~~e-i~~lr~~~~--~~~i~v~gGI-~~~g~~~~dq~rv~t~ 207 (245)
T 1eix_A 136 SDLV---DLGMTLSPADYAERLAALTQKCGLDG-VVCSAQE-AVRFKQVFG--QEFKLVTPGI-RPQGSEAGDQRRIMTP 207 (245)
T ss_dssp HHHH---TTTCCSCHHHHHHHHHHHHHHTTCSE-EECCGGG-HHHHHHHHC--SSSEEEECCB-CCTTCCCTTCCSCBCH
T ss_pred HHHH---HhccCCCHHHHHHHHHHHHHHcCCCe-EEeCHHH-HHHHHHhcC--CCCEEEECCc-CCCCCCccchhccCCH
Confidence 2221 1111 222111 22222221 0012234 667776663 4689999999 567 79
Q ss_pred HHHHHcCcceeeeccccccCc
Q 020013 182 VAALSLGAQGICLGTRFVASE 202 (332)
Q Consensus 182 ~~al~~GA~gV~~GT~fl~t~ 202 (332)
.+++.+|||.+++|+.++.++
T Consensus 208 ~~a~~aGad~iVvGr~I~~a~ 228 (245)
T 1eix_A 208 EQALSAGVDYMVIGRPVTQSV 228 (245)
T ss_dssp HHHHHTTCSEEEECHHHHTSS
T ss_pred HHHHHcCCCEEEECHHHcCCC
Confidence 999999999999999988753
|
| >3ndo_A Deoxyribose-phosphate aldolase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ALS collaborative crystallography; HET: GOL; 1.25A {Mycobacterium smegmatis} PDB: 3ng3_A | Back alignment and structure |
|---|
Probab=97.40 E-value=0.0012 Score=57.69 Aligned_cols=106 Identities=20% Similarity=0.324 Sum_probs=65.3
Q ss_pred HHHHHHhcCCcEEEEcc-------CCCcHHH---HHHHHhC--C--CEEEEec------CCHHHHH----HHHHcCCCEE
Q 020013 79 NIKAILSEKVAVLQVSW-------GEYSEEL---VLEAHSA--G--VKVVPQV------GSFDEAR----KAVNAGVDAI 134 (332)
Q Consensus 79 ~~~~~~~~~~~~I~~~~-------g~~~~~~---i~~~~~~--g--~~v~~~v------~s~~~a~----~a~~~g~D~i 134 (332)
..+.+++.|+|-|.+.. |. ...+ ++.+++. + +|++... .+.++.. .+.++|+|+|
T Consensus 85 E~~~Ai~~GAdEIDmVinig~lk~g~-~~~v~~ei~~v~~a~~~~~lKvIiEt~~L~~~~t~eei~~a~~ia~~aGADfV 163 (231)
T 3ndo_A 85 EAELAVAAGATEIDMVIDVGAALAGD-LDAVSADITAVRKAVRAATLKVIVESAALLEFSGEPLLADVCRVARDAGADFV 163 (231)
T ss_dssp HHHHHHHTTCSEEEEECCHHHHHTTC-HHHHHHHHHHHHHHTTTSEEEEECCHHHHHHHTCHHHHHHHHHHHHHTTCSEE
T ss_pred HHHHHHHcCCCEEEEEeehHhhhccc-HHHHHHHHHHHHHHccCCceEEEEECcccCCCCCHHHHHHHHHHHHHHCcCEE
Confidence 35567888999987652 22 2222 2233322 3 3444322 1444443 3568999999
Q ss_pred EE-ecCC-CCcccCCCCchhhhHHHHHHHhCCCCCcEEeecCcCCHHHHHHHHHcCccee
Q 020013 135 IV-QGRE-AGGHVIGQDGLISLLPMVVDLIGDRDIPIIAAGGIVDARGYVAALSLGAQGI 192 (332)
Q Consensus 135 vv-~G~e-aGGh~~~~~~~~~ll~~i~~~~~~~~iPviaaGGI~~~~~v~~al~~GA~gV 192 (332)
.. .|+. .||- +..-+..+++.++ .+++|-++|||.+.+++.+++.+||+-+
T Consensus 164 KTSTGf~~~~gA------t~edv~lm~~~v~-~~v~VKaaGGIrt~~~a~~~i~aGa~Ri 216 (231)
T 3ndo_A 164 KTSTGFHPSGGA------SVQAVEIMARTVG-ERLGVKASGGIRTAEQAAAMLDAGATRL 216 (231)
T ss_dssp ECCCSCCTTCSC------CHHHHHHHHHHHT-TTSEEEEESSCCSHHHHHHHHHTTCSEE
T ss_pred EcCCCCCCCCCC------CHHHHHHHHHHhC-CCceEEEeCCCCCHHHHHHHHHhcchhc
Confidence 86 3443 3332 2334444444443 2799999999999999999999999943
|
| >3k30_A Histamine dehydrogenase; 6-S-cysteinyl-FMN, ADP binding site, oxidoreductase; HET: FMN ADP; 2.70A {Pimelobacter simplex} | Back alignment and structure |
|---|
Probab=97.40 E-value=0.00062 Score=69.22 Aligned_cols=157 Identities=12% Similarity=0.119 Sum_probs=91.8
Q ss_pred HHHHhcCCcEEEEccCCC-----------------------------cHHHHHHHHhC---CCEEEEecC---------C
Q 020013 81 KAILSEKVAVLQVSWGEY-----------------------------SEELVLEAHSA---GVKVVPQVG---------S 119 (332)
Q Consensus 81 ~~~~~~~~~~I~~~~g~~-----------------------------~~~~i~~~~~~---g~~v~~~v~---------s 119 (332)
+.+.++|.|.|.+|.+.. ..++++.+++. ..+|...++ +
T Consensus 163 ~~a~~aGfDgVeih~a~gy~L~~qFlsp~~N~R~D~yGGs~enR~r~~~ei~~avr~~~g~~~~v~~r~s~~~~~~~g~~ 242 (690)
T 3k30_A 163 RRSIEAGYDIVYVYGAHGYSGVHHFLSKRYNQRTDEYGGSLENRMRLLRELLEDTLDECAGRAAVACRITVEEEIDGGIT 242 (690)
T ss_dssp HHHHHHTCSEEEEEECTTCSHHHHHHCTTTCCCCSTTSSSHHHHTHHHHHHHHHHHHHHTTSSEEEEEEECCCCSTTSCC
T ss_pred HHHHHcCCCEEEEcccccchHHHHhCCCccCCCccccCCCHHHHHHHHHHHHHHHHHHhCCCceEEEEECccccCCCCCC
Confidence 345678999999975321 12455555543 456665441 2
Q ss_pred HHHHH---HHHHcCCCEEEEecCCCCcccC-----CCCchhhhHHHHHHHhCCCCCcEEeecCcCCHHHHHHHHHcC-cc
Q 020013 120 FDEAR---KAVNAGVDAIIVQGREAGGHVI-----GQDGLISLLPMVVDLIGDRDIPIIAAGGIVDARGYVAALSLG-AQ 190 (332)
Q Consensus 120 ~~~a~---~a~~~g~D~ivv~G~eaGGh~~-----~~~~~~~ll~~i~~~~~~~~iPviaaGGI~~~~~v~~al~~G-A~ 190 (332)
.++.. +.++.++|++-+.+.....+.. .....+.++..+++.+ ++|||+.|||.+++++.++++.| ||
T Consensus 243 ~~~~~~~~~~l~~~~d~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~---~~pvi~~G~i~~~~~a~~~l~~g~~d 319 (690)
T 3k30_A 243 REDIEGVLRELGELPDLWDFAMGSWEGDSVTSRFAPEGRQEEFVAGLKKLT---TKPVVGVGRFTSPDAMVRQIKAGILD 319 (690)
T ss_dssp HHHHHHHHHHHTTSSSEEEEECSCHHHHTCCTTTCCTTTTHHHHTTSGGGC---SSCEEECSCCCCHHHHHHHHHTTSCS
T ss_pred HHHHHHHHHHHHhhcCEEEEecccccccCCCCccCCccccHHHHHHHHHHc---CCeEEEeCCCCCHHHHHHHHHCCCcc
Confidence 34332 2334489999886421111000 0111234555666665 79999999999999999999988 99
Q ss_pred eeeeccccccCccCCCCHHHHHHHhcCCCceEEEEecc-----cCCCCCCceeecChHHHh
Q 020013 191 GICLGTRFVASEESYAHPEYKRKLVEMDKTEYTDVFGR-----ARWPGAPHRVLQTPFFSN 246 (332)
Q Consensus 191 gV~~GT~fl~t~Es~~~~~~k~~~~~~~~t~~t~~~~~-----~~~~g~~~R~l~n~~~~~ 246 (332)
.|.+|+.|+..++ +=+++.+....++...++- ....+.+.++..||.+-.
T Consensus 320 ~v~~gR~~~~~P~------~~~~~~~g~~~~i~~c~~c~~C~~~~~~~~~~~C~vnp~~g~ 374 (690)
T 3k30_A 320 LIGAARPSIADPF------LPNKIRDGRLNLIRECIGCNICVSGDLTMSPIRCTQNPSMGE 374 (690)
T ss_dssp EEEESHHHHHCTT------HHHHHHTTCGGGCCCCCCCCHHHHHHHTTSCCCCSSCTTTTT
T ss_pred eEEEcHHhHhCcc------HHHHHHcCCccccccccchhhhhhcccCCCcccCCcCcccCc
Confidence 9999999998754 3334444322211110100 001245677888887753
|
| >2yyu_A Orotidine 5'-phosphate decarboxylase; TIM barrel, structural genomics, NPPSFA, national project on structural and functional analyses; HET: C5P; 2.20A {Geobacillus kaustophilus} PDB: 2yyt_A* | Back alignment and structure |
|---|
Probab=97.33 E-value=0.00061 Score=60.37 Aligned_cols=141 Identities=12% Similarity=0.117 Sum_probs=78.7
Q ss_pred HHHHHHhh-cCCcEEEEeecCCCC--HHHHHHHHhcCCcEEEEcc--CCC-cHHHHHHHHh---CCCE---EE-Eec-CC
Q 020013 54 LIRKTRSL-TERPFGVGVVLAFPH--NENIKAILSEKVAVLQVSW--GEY-SEELVLEAHS---AGVK---VV-PQV-GS 119 (332)
Q Consensus 54 ~i~~~r~~-~~~p~gvnl~~~~~~--~~~~~~~~~~~~~~I~~~~--g~~-~~~~i~~~~~---~g~~---v~-~~v-~s 119 (332)
.++.+|+. +..++-+.++ ..+. ..+++.+.+.|+|.|.+|. |.. ....++.+++ .|.+ ++ ... ++
T Consensus 47 ~v~~lr~~~~~v~lD~kl~-Dip~t~~~~~~~~~~~Gad~vTvH~~~g~~~l~~~~~~~~~~~~~G~~~~~~lav~~~Ts 125 (246)
T 2yyu_A 47 IVAFLKEQGHAVFLDLKLH-DIPNTVKQAMKGLARVGADLVNVHAAGGRRMMEAAIEGLDAGTPSGRMRPRCIAVTQLTS 125 (246)
T ss_dssp HHHHHHHTTCEEEEEEEEC-SCHHHHHHHHHHHHHTTCSEEEEEGGGCHHHHHHHHHHHHHHSCSSSCCCEEEEESSCTT
T ss_pred HHHHHHHCCCeEEEEeecc-cchHHHHHHHHHHHhcCCCEEEEECCCCHHHHHHHHHHHHhhcccCCcCCCEEEEEeCCC
Confidence 35566665 3455666665 3331 1266778889999999984 221 1345666776 5632 34 222 23
Q ss_pred H--HHHHHHHHcCC-----CEEEEe---cCCCCcccCCCCchhhhHHHHHHHhCCCCCcEEeecCcCCHH----------
Q 020013 120 F--DEARKAVNAGV-----DAIIVQ---GREAGGHVIGQDGLISLLPMVVDLIGDRDIPIIAAGGIVDAR---------- 179 (332)
Q Consensus 120 ~--~~a~~a~~~g~-----D~ivv~---G~eaGGh~~~~~~~~~ll~~i~~~~~~~~iPviaaGGI~~~~---------- 179 (332)
. ++.. .+.+. |.|+.- ..+.|+.. --.+... +.++++..+ ..+++.+||| +++
T Consensus 126 ~~~~~l~--~~~~~~~~~~d~Vl~ma~~~~~~G~~g-~V~~~~e-i~~lr~~~~--~~~i~V~gGI-~~~g~~~~dq~rv 198 (246)
T 2yyu_A 126 TDERMLH--EELWISRPLVETVAHYAALAKESGLDG-VVCSANE-AAFIKERCG--ASFLAVTPGI-RFADDAAHDQVRV 198 (246)
T ss_dssp CCHHHHH--HTSCCCSCHHHHHHHHHHHHHHHTCCE-EECCHHH-HHHHHHHHC--TTSEEEECCC-CCCC-------CC
T ss_pred CCHHHHH--HHhcCCCCHHHHHHHHHHHHHHhCCCE-EEeCHHH-HHHHHHhcC--CCCEEEeCCc-CCCCCCccccccc
Confidence 1 3320 11111 222110 11222211 0012233 666666653 3469999999 456
Q ss_pred -HHHHHHHcCcceeeeccccccCc
Q 020013 180 -GYVAALSLGAQGICLGTRFVASE 202 (332)
Q Consensus 180 -~v~~al~~GA~gV~~GT~fl~t~ 202 (332)
++.+++.+|||.+++|+.++.++
T Consensus 199 ~t~~~a~~aGad~iVvGr~I~~a~ 222 (246)
T 2yyu_A 199 VTPRKARALGSDYIVIGRSLTRAA 222 (246)
T ss_dssp CCHHHHHHHTCSEEEECHHHHTSS
T ss_pred CCHHHHHHcCCCEEEECHhhcCCC
Confidence 68999999999999999988753
|
| >4e38_A Keto-hydroxyglutarate-aldolase/keto-deoxy-phospho aldolase; lyase; 1.64A {Vibrionales bacterium swat-3} | Back alignment and structure |
|---|
Probab=97.25 E-value=0.0049 Score=53.93 Aligned_cols=100 Identities=16% Similarity=0.165 Sum_probs=73.3
Q ss_pred HHHHHHHhcCCcEEEEccCCC-cHHHHHHHHhC--CCEEE-EecCCHHHHHHHHHcCCCEEEEecCCCCcccCCCCchhh
Q 020013 78 ENIKAILSEKVAVLQVSWGEY-SEELVLEAHSA--GVKVV-PQVGSFDEARKAVNAGVDAIIVQGREAGGHVIGQDGLIS 153 (332)
Q Consensus 78 ~~~~~~~~~~~~~I~~~~g~~-~~~~i~~~~~~--g~~v~-~~v~s~~~a~~a~~~g~D~ivv~G~eaGGh~~~~~~~~~ 153 (332)
+..+.+.+.|++.|++.+-.+ ..+.++.+++. ++.+. .+|.+.++++.+.++|+|+|+. .+ .+..
T Consensus 50 ~~a~al~~gGi~~iEvt~~t~~a~e~I~~l~~~~~~~~iGaGTVlt~~~a~~Ai~AGA~fIvs-----P~------~~~~ 118 (232)
T 4e38_A 50 PLGKVLAENGLPAAEITFRSDAAVEAIRLLRQAQPEMLIGAGTILNGEQALAAKEAGATFVVS-----PG------FNPN 118 (232)
T ss_dssp HHHHHHHHTTCCEEEEETTSTTHHHHHHHHHHHCTTCEEEEECCCSHHHHHHHHHHTCSEEEC-----SS------CCHH
T ss_pred HHHHHHHHCCCCEEEEeCCCCCHHHHHHHHHHhCCCCEEeECCcCCHHHHHHHHHcCCCEEEe-----CC------CCHH
Confidence 456778888999999875433 34677777663 44444 4577899999999999999974 11 1234
Q ss_pred hHHHHHHHhCCCCCcEEeecCcCCHHHHHHHHHcCcceeee
Q 020013 154 LLPMVVDLIGDRDIPIIAAGGIVDARGYVAALSLGAQGICL 194 (332)
Q Consensus 154 ll~~i~~~~~~~~iPviaaGGI~~~~~v~~al~~GA~gV~~ 194 (332)
++....+ . ++|++. |+.|+.++.+++++|||.|-+
T Consensus 119 vi~~~~~-~---gi~~ip--Gv~TptEi~~A~~~Gad~vK~ 153 (232)
T 4e38_A 119 TVRACQE-I---GIDIVP--GVNNPSTVEAALEMGLTTLKF 153 (232)
T ss_dssp HHHHHHH-H---TCEEEC--EECSHHHHHHHHHTTCCEEEE
T ss_pred HHHHHHH-c---CCCEEc--CCCCHHHHHHHHHcCCCEEEE
Confidence 4444444 2 689888 688999999999999999975
|
| >3iwp_A Copper homeostasis protein CUTC homolog; conserved sequence motif, metal-binding site, polymorphism, metal binding protein; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.20 E-value=0.011 Score=53.16 Aligned_cols=159 Identities=16% Similarity=0.195 Sum_probs=95.1
Q ss_pred CcHHHHHHHHhCCCceeec------CCCCCCHHHHHHHHHHHHhhcCCcEEEEeecCCC-----C--------HHHHHHH
Q 020013 23 SGPELVAAVANAGGLGLLR------APDWEAPDYLRDLIRKTRSLTERPFGVGVVLAFP-----H--------NENIKAI 83 (332)
Q Consensus 23 s~~~la~avs~aGglG~i~------~~~~~~~e~~~~~i~~~r~~~~~p~gvnl~~~~~-----~--------~~~~~~~ 83 (332)
.+.+-+.++.++|. .-|. .++ .+|. ...++.+++..+.| |++++.+. + .+.++.+
T Consensus 47 ~s~~~a~~A~~gGA-dRIELc~~l~~GG-lTPS--~g~i~~a~~~~~ip--V~vMIRPRgGdF~Ys~~E~~~M~~dI~~~ 120 (287)
T 3iwp_A 47 DSVESAVNAERGGA-DRIELCSGLSEGG-TTPS--MGVLQVVKQSVQIP--VFVMIRPRGGDFLYSDREIEVMKADIRLA 120 (287)
T ss_dssp SSHHHHHHHHHHTC-SEEEECBCGGGTC-BCCC--HHHHHHHHTTCCSC--EEEECCSSSSCSCCCHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHhCC-CEEEECCCCCCCC-CCCC--HHHHHHHHHhcCCC--eEEEEecCCCCcccCHHHHHHHHHHHHHH
Confidence 36777777766553 3332 222 3443 13456666655544 44454321 1 2457788
Q ss_pred HhcCCcEEEEcc----CCCcHHHHHHH-Hh-CCCEEE-Ee----cCCHHHHH-HHHHcCCCEEEEecCCCCcccCCCCch
Q 020013 84 LSEKVAVLQVSW----GEYSEELVLEA-HS-AGVKVV-PQ----VGSFDEAR-KAVNAGVDAIIVQGREAGGHVIGQDGL 151 (332)
Q Consensus 84 ~~~~~~~I~~~~----g~~~~~~i~~~-~~-~g~~v~-~~----v~s~~~a~-~a~~~g~D~ivv~G~eaGGh~~~~~~~ 151 (332)
.+.|+|.|.+++ |....+..+++ .. .++.+. +- +.++.++. ...+.|+|.|+..|. .. .....
T Consensus 121 ~~~GAdGvVfG~L~~dg~iD~~~~~~Li~~a~~l~vTFHRAFD~~~d~~~Ale~Li~lGvdrILTSG~----~~-~a~~G 195 (287)
T 3iwp_A 121 KLYGADGLVFGALTEDGHIDKELCMSLMAICRPLPVTFHRAFDMVHDPMAALETLLTLGFERVLTSGC----DS-SALEG 195 (287)
T ss_dssp HHTTCSEEEECCBCTTSCBCHHHHHHHHHHHTTSCEEECGGGGGCSCHHHHHHHHHHHTCSEEEECTT----SS-STTTT
T ss_pred HHcCCCEEEEeeeCCCCCcCHHHHHHHHHHcCCCcEEEECchhccCCHHHHHHHHHHcCCCEEECCCC----CC-ChHHh
Confidence 899999999984 22233333333 22 244443 22 23555554 455679999998542 22 22234
Q ss_pred hhhHHHHHHHhCCCCCcEEeecCcCCHHHHHHHHH-cCcceeee
Q 020013 152 ISLLPMVVDLIGDRDIPIIAAGGIVDARGYVAALS-LGAQGICL 194 (332)
Q Consensus 152 ~~ll~~i~~~~~~~~iPviaaGGI~~~~~v~~al~-~GA~gV~~ 194 (332)
+..|+++.+.... +++|++.||| +.+|+.+.+. .|++.+=+
T Consensus 196 l~~Lk~Lv~~a~~-rI~ImaGGGV-~~~Ni~~l~~~tG~~~~H~ 237 (287)
T 3iwp_A 196 LPLIKRLIEQAKG-RIVVMPGGGI-TDRNLQRILEGSGATEFHC 237 (287)
T ss_dssp HHHHHHHHHHHTT-SSEEEECTTC-CTTTHHHHHHHHCCSEEEE
T ss_pred HHHHHHHHHHhCC-CCEEEECCCc-CHHHHHHHHHhhCCCEEeE
Confidence 6677777776543 6999999999 8999999987 89887765
|
| >4gj1_A 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino) methylideneamino] imidazole-4-carboxamide...; HISA, csgid, niaid,; 2.15A {Campylobacter jejuni subsp} | Back alignment and structure |
|---|
Probab=97.13 E-value=0.00061 Score=60.30 Aligned_cols=79 Identities=13% Similarity=0.225 Sum_probs=59.8
Q ss_pred HHHHHHHHHcCCCEEEEecCCCCcccCCCCchhhhHHHHHHHhCCCCCcEEeecCcCCHHHHHHHHHcCcceeeeccccc
Q 020013 120 FDEARKAVNAGVDAIIVQGREAGGHVIGQDGLISLLPMVVDLIGDRDIPIIAAGGIVDARGYVAALSLGAQGICLGTRFV 199 (332)
Q Consensus 120 ~~~a~~a~~~g~D~ivv~G~eaGGh~~~~~~~~~ll~~i~~~~~~~~iPviaaGGI~~~~~v~~al~~GA~gV~~GT~fl 199 (332)
.+.|+...+.|+|.+.+---.+. ..+....+.++.++.+.. .+|+...|||.+.+++.++|.+||+-|.+||..+
T Consensus 34 ~~~a~~~~~~gad~lhvvDld~a--~~~~~~~~~~i~~i~~~~---~~pl~vGGGIrs~e~~~~~l~~GadkVii~t~a~ 108 (243)
T 4gj1_A 34 LKKFKEYEKAGAKELHLVDLTGA--KDPSKRQFALIEKLAKEV---SVNLQVGGGIRSKEEVKALLDCGVKRVVIGSMAI 108 (243)
T ss_dssp HHHHHHHHHHTCCEEEEEEHHHH--HCGGGCCHHHHHHHHHHC---CSEEEEESSCCCHHHHHHHHHTTCSEEEECTTTT
T ss_pred HHHHHHHHHCCCCEEEEEecCcc--cccchhHHHHHHHHHHhc---CCCeEeccccccHHHHHHHHHcCCCEEEEccccc
Confidence 35567777889998877322110 001123467888888876 7999999999999999999999999999999988
Q ss_pred cCcc
Q 020013 200 ASEE 203 (332)
Q Consensus 200 ~t~E 203 (332)
..++
T Consensus 109 ~~p~ 112 (243)
T 4gj1_A 109 KDAT 112 (243)
T ss_dssp TCHH
T ss_pred cCCc
Confidence 6543
|
| >3r2g_A Inosine 5'-monophosphate dehydrogenase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 1.94A {Legionella pneumophila subsp} | Back alignment and structure |
|---|
Probab=97.08 E-value=0.0063 Score=56.79 Aligned_cols=110 Identities=23% Similarity=0.151 Sum_probs=71.9
Q ss_pred HHHHHHHHhcCCcEEEEccCCCcHHHHHHHHhCCCEEEEecC----CHHHHHHHHHcCCCEEEEecCCCCcccCCCCchh
Q 020013 77 NENIKAILSEKVAVLQVSWGEYSEELVLEAHSAGVKVVPQVG----SFDEARKAVNAGVDAIIVQGREAGGHVIGQDGLI 152 (332)
Q Consensus 77 ~~~~~~~~~~~~~~I~~~~g~~~~~~i~~~~~~g~~v~~~v~----s~~~a~~a~~~g~D~ivv~G~eaGGh~~~~~~~~ 152 (332)
.+....+.+.|.-.+. +-...++++.+.+++....+...+. +.+.++.+.++|+|+|.++... ||. ...+
T Consensus 56 ~~lA~A~a~~Gg~gvi-~~~~s~ee~~~~i~~~~~~~~~~~g~~~~~~e~~~~a~~aGvdvI~id~a~--G~~---~~~~ 129 (361)
T 3r2g_A 56 SNMANFMHSKGAMGAL-HRFMTIEENIQEFKKCKGPVFVSVGCTENELQRAEALRDAGADFFCVDVAH--AHA---KYVG 129 (361)
T ss_dssp HHHHHHHHHTTCEEBC-CSCSCHHHHHHHHHTCCSCCBEEECSSHHHHHHHHHHHHTTCCEEEEECSC--CSS---HHHH
T ss_pred HHHHHHHHHcCCCEEE-eCCCCHHHHHHHHhhcceEEEEEcCCCHHHHHHHHHHHHcCCCEEEEeCCC--CCc---HhHH
Confidence 3444455555543332 2234456677777654433333332 2456777889999999886432 332 2346
Q ss_pred hhHHHHHHHhCCCCCcEEeecCcCCHHHHHHHHHcCcceeeec
Q 020013 153 SLLPMVVDLIGDRDIPIIAAGGIVDARGYVAALSLGAQGICLG 195 (332)
Q Consensus 153 ~ll~~i~~~~~~~~iPviaaGGI~~~~~v~~al~~GA~gV~~G 195 (332)
..++.+++..+ ++||++ |+|.+++++..+..+|||+|.+|
T Consensus 130 e~I~~ir~~~~--~~~Vi~-G~V~T~e~A~~a~~aGaD~I~Vg 169 (361)
T 3r2g_A 130 KTLKSLRQLLG--SRCIMA-GNVATYAGADYLASCGADIIKAG 169 (361)
T ss_dssp HHHHHHHHHHT--TCEEEE-EEECSHHHHHHHHHTTCSEEEEC
T ss_pred HHHHHHHHhcC--CCeEEE-cCcCCHHHHHHHHHcCCCEEEEc
Confidence 67888887763 588886 67889999999999999999985
|
| >3tjl_A NADPH dehydrogenase; OLD yellow enzyme, flavin mononucleotide, TIM barrel, NADPH oxidoreductase, enone reductase; HET: FMN; 1.50A {Scheffersomyces stipitis cbs 6054} PDB: 3upw_A* 4df2_A* | Back alignment and structure |
|---|
Probab=97.03 E-value=0.0012 Score=62.69 Aligned_cols=74 Identities=15% Similarity=0.130 Sum_probs=48.9
Q ss_pred HHcC--CCEEEEe-cCCCCcccCCCCchhhhHHHHHHHhCCCCCcEEeecCcCCHHHHHHHHHc----Ccceeeeccccc
Q 020013 127 VNAG--VDAIIVQ-GREAGGHVIGQDGLISLLPMVVDLIGDRDIPIIAAGGIVDARGYVAALSL----GAQGICLGTRFV 199 (332)
Q Consensus 127 ~~~g--~D~ivv~-G~eaGGh~~~~~~~~~ll~~i~~~~~~~~iPviaaGGI~~~~~v~~al~~----GA~gV~~GT~fl 199 (332)
.+.| +|+|-+. +...+.........+..+..+++.. ++|||++|||.+.+++.+++.. +||.|.+|+.|+
T Consensus 274 ~~~G~~l~ylhv~~~~~~~~~~~~~~~~~~~~~~ir~~~---~~PvI~~Ggi~~~~dA~~~i~~~~~g~aDlVa~GR~~i 350 (407)
T 3tjl_A 274 ADKGQGIAYISVVEPRVSGNVDVSEEDQAGDNEFVSKIW---KGVILKAGNYSYDAPEFKTLKEDIADKRTLVGFSRYFT 350 (407)
T ss_dssp HHTTCCCSEEEEECTTEETTEECCGGGCCCCSHHHHHHC---CSEEEEESCGGGGTTTTHHHHHHHTTSSEEEECSHHHH
T ss_pred hhcCCceeEEEEEccccCCCCcCCccchhHHHHHHHHHh---CCCEEecCCCCCHHHHHHHHHhhccCCCeEEEeChhhh
Confidence 6678 9999885 3211110001101123456666666 6899999999877766666654 599999999999
Q ss_pred cCcc
Q 020013 200 ASEE 203 (332)
Q Consensus 200 ~t~E 203 (332)
..+.
T Consensus 351 aNPd 354 (407)
T 3tjl_A 351 SNPN 354 (407)
T ss_dssp HCTT
T ss_pred hCch
Confidence 8754
|
| >1gvf_A Tagatose-bisphosphate aldolase AGAY; lyase, zinc.; HET: PGH; 1.45A {Escherichia coli} SCOP: c.1.10.2 | Back alignment and structure |
|---|
Probab=96.93 E-value=0.078 Score=47.72 Aligned_cols=149 Identities=16% Similarity=0.187 Sum_probs=97.5
Q ss_pred HHHHHHHHHHHHhhcCCcEEEEeecCCCCHHHHHHHHhcCCcEEEEccCCCcH--------HHHHHHHhCCCEEEE----
Q 020013 48 PDYLRDLIRKTRSLTERPFGVGVVLAFPHNENIKAILSEKVAVLQVSWGEYSE--------ELVLEAHSAGVKVVP---- 115 (332)
Q Consensus 48 ~e~~~~~i~~~r~~~~~p~gvnl~~~~~~~~~~~~~~~~~~~~I~~~~g~~~~--------~~i~~~~~~g~~v~~---- 115 (332)
.+.+...+..+.+..+.|+.+++=--. ..+.+..+++.|...|-+.....|. ++++.++..|+.|=.
T Consensus 59 ~~~~~~~v~~~a~~~~VPValHlDHg~-~~e~i~~ai~~GFtSVMiDgS~lp~eeNi~~Tk~vv~~ah~~gvsVEaElG~ 137 (286)
T 1gvf_A 59 LEEIYALCSAYSTTYNMPLALHLDHHE-SLDDIRRKVHAGVRSAMIDGSHFPFAENVKLVKSVVDFCHSQDCSVEAELGR 137 (286)
T ss_dssp HHHHHHHHHHHHHHTTSCBEEEEEEEC-CHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHHHHHHTTCEEEEEESC
T ss_pred HHHHHHHHHHHHHhCCCcEEEEcCCCC-CHHHHHHHHHcCCCeEEECCCCCCHHHHHHHHHHHHHHHHHcCCEEEEEEee
Confidence 344555555554445677777653222 2567778888888888776333332 455666666665421
Q ss_pred ---------------ecCCHHHHHHHH-HcCCCEEEE-ecCCCCcccCCCCchhhhHHHHHHHhCCCCCcEEeec--CcC
Q 020013 116 ---------------QVGSFDEARKAV-NAGVDAIIV-QGREAGGHVIGQDGLISLLPMVVDLIGDRDIPIIAAG--GIV 176 (332)
Q Consensus 116 ---------------~v~s~~~a~~a~-~~g~D~ivv-~G~eaGGh~~~~~~~~~ll~~i~~~~~~~~iPviaaG--GI~ 176 (332)
..++++++.... +.|+|.+-+ .|.-=|-..+.+.-.+.+|.++.+.+ ++|++.-| |+
T Consensus 138 vgg~ed~~~~~~~~~~~T~Peea~~Fv~~TgvD~LAvaiGt~HG~Y~~~p~Ld~~~L~~I~~~~---~vpLVlHGgSG~- 213 (286)
T 1gvf_A 138 LGGVEDDMSVDAESAFLTDPQEAKRFVELTGVDSLAVAIGTAHGLYSKTPKIDFQRLAEIREVV---DVPLVLHGASDV- 213 (286)
T ss_dssp CC-----------CCSSCCHHHHHHHHHHHCCSEEEECSSCCSSCCSSCCCCCHHHHHHHHHHC---CSCEEECCCTTC-
T ss_pred ccCcccCcccccccccCCCHHHHHHHHHHHCCCEEEeecCccccCcCCCCccCHHHHHHHHHhc---CCCEEEECCCCC-
Confidence 126788888876 579998877 23321222212234588999999987 79999888 66
Q ss_pred CHHHHHHHHHcCcceeeeccccccC
Q 020013 177 DARGYVAALSLGAQGICLGTRFVAS 201 (332)
Q Consensus 177 ~~~~v~~al~~GA~gV~~GT~fl~t 201 (332)
..+++.+++.+|..-|=++|-+..+
T Consensus 214 ~~e~i~~ai~~Gv~KiNi~Tdl~~a 238 (286)
T 1gvf_A 214 PDEFVRRTIELGVTKVNVATELKIA 238 (286)
T ss_dssp CHHHHHHHHHTTEEEEEECHHHHHH
T ss_pred CHHHHHHHHHCCCeEEEEChHHHHH
Confidence 5677999999999999999886443
|
| >1vcv_A Probable deoxyribose-phosphate aldolase; DERA, hyperthermophIle, archaea, lyase; 2.00A {Pyrobaculum aerophilum} SCOP: c.1.10.1 | Back alignment and structure |
|---|
Probab=96.89 E-value=0.035 Score=48.26 Aligned_cols=106 Identities=19% Similarity=0.165 Sum_probs=64.8
Q ss_pred HHHHHhcCCcEEEEcc--C----CCcHHH---HHHHHh----CCCEEEEec--CCHHHHH----HHHHcCCCEEEEe-cC
Q 020013 80 IKAILSEKVAVLQVSW--G----EYSEEL---VLEAHS----AGVKVVPQV--GSFDEAR----KAVNAGVDAIIVQ-GR 139 (332)
Q Consensus 80 ~~~~~~~~~~~I~~~~--g----~~~~~~---i~~~~~----~g~~v~~~v--~s~~~a~----~a~~~g~D~ivv~-G~ 139 (332)
.+. ++.|++-|.+.. | .....+ ++.+++ ..+||+... -+.++.. .+.++|+|+|... |+
T Consensus 73 ~~~-i~~GAdEID~Vinig~~~~g~~~~v~~ei~~v~~a~~~~~lKvIlEt~~Lt~eei~~a~~ia~eaGADfVKTSTGf 151 (226)
T 1vcv_A 73 VSR-LAEVADEIDVVAPIGLVKSRRWAEVRRDLISVVGAAGGRVVKVITEEPYLRDEERYTLYDIIAEAGAHFIKSSTGF 151 (226)
T ss_dssp HHH-HTTTCSEEEEECCHHHHHTTCHHHHHHHHHHHHHHTTTSEEEEECCGGGCCHHHHHHHHHHHHHHTCSEEECCCSC
T ss_pred HHH-HHCCCCEEEEecchhhhcCCCHHHHHHHHHHHHHHHcCCCceEEEeccCCCHHHHHHHHHHHHHcCCCEEEeCCCC
Confidence 456 788999887642 1 111222 223332 345665432 2555433 3568899999873 55
Q ss_pred C----------CCcccCCCCchhhhHHHHHHHhCCCCCcEEeecCcCCHHHHHHHHHc---Ccc
Q 020013 140 E----------AGGHVIGQDGLISLLPMVVDLIGDRDIPIIAAGGIVDARGYVAALSL---GAQ 190 (332)
Q Consensus 140 e----------aGGh~~~~~~~~~ll~~i~~~~~~~~iPviaaGGI~~~~~v~~al~~---GA~ 190 (332)
. .||- ......++.++.+..+. ++||-++|||.+.+++.+++.+ ||+
T Consensus 152 ~~~~~~~~~~~~~gA---t~~dv~lm~~~i~~~g~-~v~vKaaGGirt~~~al~~i~a~~~Ga~ 211 (226)
T 1vcv_A 152 AEEAYAARQGNPVHS---TPERAAAIARYIKEKGY-RLGVKMAGGIRTREQAKAIVDAIGWGED 211 (226)
T ss_dssp CCHHHHHHTTCCSSC---CHHHHHHHHHHHHHHTC-CCEEEEESSCCSHHHHHHHHHHHCSCSC
T ss_pred CccccccccCCCCCC---CHHHHHHHHHHHHHhCC-CceEEEeCCCCCHHHHHHHHHHHHCCCC
Confidence 3 2221 12334555555443532 6999999999999999999999 988
|
| >1dbt_A Orotidine 5'-phosphate decarboxylase; UMP, TIM barrel, lyase; HET: U5P; 2.40A {Bacillus subtilis} SCOP: c.1.2.3 | Back alignment and structure |
|---|
Probab=96.80 E-value=0.00032 Score=61.94 Aligned_cols=143 Identities=15% Similarity=0.193 Sum_probs=78.2
Q ss_pred HHHHHHhh-cCCcEEEEeecCCCC--HHHHHHHHhcCCcEEEEcc--CCC-cHHHHHHHHhC---CCE----EEEecC-C
Q 020013 54 LIRKTRSL-TERPFGVGVVLAFPH--NENIKAILSEKVAVLQVSW--GEY-SEELVLEAHSA---GVK----VVPQVG-S 119 (332)
Q Consensus 54 ~i~~~r~~-~~~p~gvnl~~~~~~--~~~~~~~~~~~~~~I~~~~--g~~-~~~~i~~~~~~---g~~----v~~~v~-s 119 (332)
.++.+|+. +..++-+.++ ..+. ..+++.+.+.|+|.|.+|. |.. ....++.+++. |.+ +...+. +
T Consensus 46 ~v~~l~~~~~~v~lD~kl~-Dip~t~~~~~~~~~~~Gad~vtvH~~~g~~~l~~~~~~~~~~~~~g~~~~~~~~V~~~ts 124 (239)
T 1dbt_A 46 IVKQLKERNCELFLDLKLH-DIPTTVNKAMKRLASLGVDLVNVHAAGGKKMMQAALEGLEEGTPAGKKRPSLIAVTQLTS 124 (239)
T ss_dssp HHHHHHHTTCEEEEEEEEC-SCHHHHHHHHHHHHTTTCSEEEEEGGGCHHHHHHHHHHHHHHSCTTSCCCEEEEECSCTT
T ss_pred HHHHHHHCCCcEEEEeccc-cchHHHHHHHHHHHhcCCCEEEEeCcCCHHHHHHHHHHHHhhhccCCCCccEEEEEEcCC
Confidence 34556655 3455666665 3331 1367778889999999984 221 12455666665 763 333332 2
Q ss_pred H--HHH-HHH-HHcC-CCEEEEe---cCCCCcccCCCCchhhhHHHHHHHhCCCCCcEEeecCcCCHHHH----------
Q 020013 120 F--DEA-RKA-VNAG-VDAIIVQ---GREAGGHVIGQDGLISLLPMVVDLIGDRDIPIIAAGGIVDARGY---------- 181 (332)
Q Consensus 120 ~--~~a-~~a-~~~g-~D~ivv~---G~eaGGh~~~~~~~~~ll~~i~~~~~~~~iPviaaGGI~~~~~v---------- 181 (332)
. +.. +.. .... +|.|..- ..+.|+... -.+. .-+.++++... +.+++.+||| ++++.
T Consensus 125 ~~~~~l~~~~~~~~~~~d~Vl~ma~~~~~~G~~g~-v~~~-~~i~~lr~~~~--~~~i~v~gGI-~~~~~~~~dq~rv~t 199 (239)
T 1dbt_A 125 TSEQIMKDELLIEKSLIDTVVHYSKQAEESGLDGV-VCSV-HEAKAIYQAVS--PSFLTVTPGI-RMSEDAANDQVRVAT 199 (239)
T ss_dssp CCHHHHHHTSCBCSCHHHHHHHHHHHHHHTTCSEE-ECCG-GGHHHHTTTSC--TTCEEEECCB-CCTTSCCTTCSSCBC
T ss_pred CCHHHHHHHhccCCCHHHHHHHHHHHHHHhCCCEE-EECH-HHHHHHHHhcC--CCcEEEeCCc-CCCCCCccceeccCC
Confidence 1 222 110 0000 1222111 122232210 0011 34455555442 4689999999 56776
Q ss_pred -HHHHHcCcceeeeccccccCc
Q 020013 182 -VAALSLGAQGICLGTRFVASE 202 (332)
Q Consensus 182 -~~al~~GA~gV~~GT~fl~t~ 202 (332)
.+++.+|||.+++|+.++.++
T Consensus 200 p~~a~~aGad~iVvGr~I~~a~ 221 (239)
T 1dbt_A 200 PAIAREKGSSAIVVGRSITKAE 221 (239)
T ss_dssp HHHHHHTTCSEEEECHHHHTSS
T ss_pred HHHHHHcCCCEEEEChhhcCCC
Confidence 889999999999999988753
|
| >3nvt_A 3-deoxy-D-arabino-heptulosonate 7-phosphate synth; bifunctional 3-deoxy-7-phosphoheptulonate synthase/chorismat listeria monocytogenes EGD-E; 1.95A {Listeria monocytogenes} PDB: 3tfc_A* | Back alignment and structure |
|---|
Probab=96.64 E-value=0.091 Score=49.37 Aligned_cols=175 Identities=18% Similarity=0.190 Sum_probs=103.9
Q ss_pred cceecCCCCCCCCcHHHH----HHHHhCCCceeecCCCC-----------CCHHHHHHHHHHHHhhcCCcEEEEeecCCC
Q 020013 11 YGIVQAPLGPDISGPELV----AAVANAGGLGLLRAPDW-----------EAPDYLRDLIRKTRSLTERPFGVGVVLAFP 75 (332)
Q Consensus 11 ~Pii~apM~~g~s~~~la----~avs~aGglG~i~~~~~-----------~~~e~~~~~i~~~r~~~~~p~gvnl~~~~~ 75 (332)
.++|.||.+ +.+.+.+ .++.++|. .++....| .+.+.+ +++.++++..+.|+..-++-
T Consensus 143 ~~~Iigpcs--ves~e~a~~~a~~~k~aGa-~~vk~q~fkprts~~~f~gl~~egl-~~L~~~~~~~Gl~~~te~~d--- 215 (385)
T 3nvt_A 143 PVFVFGPCS--VESYEQVAAVAESIKAKGL-KLIRGGAFKPRTSPYDFQGLGLEGL-KILKRVSDEYGLGVISEIVT--- 215 (385)
T ss_dssp CEEEEECSB--CCCHHHHHHHHHHHHHTTC-CEEECBSSCCCSSTTSCCCCTHHHH-HHHHHHHHHHTCEEEEECCS---
T ss_pred eEEEEEeCC--cCCHHHHHHHHHHHHHcCC-CeEEcccccCCCChHhhcCCCHHHH-HHHHHHHHHcCCEEEEecCC---
Confidence 367788875 6676555 44555664 23311111 233444 34455555556777665443
Q ss_pred CHHHHHHHHhcCCcEEEEccCC-CcHHHHHHHHhCCCEEEEec---CCHHHHHHHH----HcCC-CEEEEe-cCCC-Ccc
Q 020013 76 HNENIKAILSEKVAVLQVSWGE-YSEELVLEAHSAGVKVVPQV---GSFDEARKAV----NAGV-DAIIVQ-GREA-GGH 144 (332)
Q Consensus 76 ~~~~~~~~~~~~~~~I~~~~g~-~~~~~i~~~~~~g~~v~~~v---~s~~~a~~a~----~~g~-D~ivv~-G~ea-GGh 144 (332)
...++.+.+. +|++.++.+. ...++++.+.+.|.+|+.+- .++++...+. ..|. +.++++ |... -..
T Consensus 216 -~~~~~~l~~~-vd~lkIgs~~~~n~~LL~~~a~~gkPVilk~G~~~t~~e~~~Ave~i~~~Gn~~i~L~~rG~s~yp~~ 293 (385)
T 3nvt_A 216 -PADIEVALDY-VDVIQIGARNMQNFELLKAAGRVDKPILLKRGLSATIEEFIGAAEYIMSQGNGKIILCERGIRTYEKA 293 (385)
T ss_dssp -GGGHHHHTTT-CSEEEECGGGTTCHHHHHHHHTSSSCEEEECCTTCCHHHHHHHHHHHHTTTCCCEEEEECCBCCSCCS
T ss_pred -HHHHHHHHhh-CCEEEECcccccCHHHHHHHHccCCcEEEecCCCCCHHHHHHHHHHHHHcCCCeEEEEECCCCCCCCC
Confidence 5667777777 9999997543 34467888888899998764 4777766554 4565 566665 3311 000
Q ss_pred cCCCCchhhhHHHHHHHhCCCCCcEEee--cCcCCH----HHHHHHHHcCcceeeecccc
Q 020013 145 VIGQDGLISLLPMVVDLIGDRDIPIIAA--GGIVDA----RGYVAALSLGAQGICLGTRF 198 (332)
Q Consensus 145 ~~~~~~~~~ll~~i~~~~~~~~iPviaa--GGI~~~----~~v~~al~~GA~gV~~GT~f 198 (332)
. -....+..++.+++.. ++||+.. =|+++. .-..++.++||+|+++=.-|
T Consensus 294 ~-~~~ldl~~i~~lk~~~---~lpV~~D~th~~G~r~~v~~~a~AAvA~GA~gl~iE~H~ 349 (385)
T 3nvt_A 294 T-RNTLDISAVPILKKET---HLPVMVDVTHSTGRKDLLLPCAKAALAIEADGVMAEVHP 349 (385)
T ss_dssp S-SSBCCTTHHHHHHHHB---SSCEEEEHHHHHCCGGGHHHHHHHHHHTTCSEEEEEBCS
T ss_pred C-ccccCHHHHHHHHHhc---CCCEEEcCCCCCCccchHHHHHHHHHHhCCCEEEEEecC
Confidence 0 1123466688887766 7899765 122111 22456889999999996644
|
| >1vc4_A Indole-3-glycerol phosphate synthase; lyase, tryptophan biosynthesis, riken structural genomics/PR initiative, RSGI, structural genomics; 1.80A {Thermus thermophilus} SCOP: c.1.2.4 | Back alignment and structure |
|---|
Probab=96.61 E-value=0.0099 Score=52.78 Aligned_cols=73 Identities=21% Similarity=0.238 Sum_probs=57.4
Q ss_pred HHHHHHHHHcCCCEEEEecCCCCcccCCCCchhhhHHHHHHHhCCCCCcEEeecCcCCHHHHHHHHHcCcceeeeccccc
Q 020013 120 FDEARKAVNAGVDAIIVQGREAGGHVIGQDGLISLLPMVVDLIGDRDIPIIAAGGIVDARGYVAALSLGAQGICLGTRFV 199 (332)
Q Consensus 120 ~~~a~~a~~~g~D~ivv~G~eaGGh~~~~~~~~~ll~~i~~~~~~~~iPviaaGGI~~~~~v~~al~~GA~gV~~GT~fl 199 (332)
.+.|+.+++.|+++|-+-.-+ +.- .+....+..+++.+ ++||+.-++|.+..++..++.+|||+|.+|+..+
T Consensus 68 ~~~A~~~~~~GA~~isvlt~~--~~f---~G~~~~l~~i~~~v---~lPvl~kdfI~d~~qi~~a~~~GAD~VlL~~~~l 139 (254)
T 1vc4_A 68 VEAALAYARGGARAVSVLTEP--HRF---GGSLLDLKRVREAV---DLPLLRKDFVVDPFMLEEARAFGASAALLIVALL 139 (254)
T ss_dssp HHHHHHHHHTTCSEEEEECCC--SSS---CCCHHHHHHHHHHC---CSCEEEESCCCSHHHHHHHHHTTCSEEEEEHHHH
T ss_pred HHHHHHHHHcCCCEEEEecch--hhh---ccCHHHHHHHHHhc---CCCEEECCcCCCHHHHHHHHHcCCCEEEECccch
Confidence 566788889999999773211 110 12356777888877 8999999999999999999999999999999987
Q ss_pred c
Q 020013 200 A 200 (332)
Q Consensus 200 ~ 200 (332)
.
T Consensus 140 ~ 140 (254)
T 1vc4_A 140 G 140 (254)
T ss_dssp G
T ss_pred H
Confidence 5
|
| >3m47_A Orotidine 5'-phosphate decarboxylase; orotidine 5'-monophosphate decarboxylase, mutant I218A, LYAS; 1.20A {Methanothermobacter thermautotrophicusdelta H} SCOP: c.1.2.3 PDB: 3li1_A 3m5z_A 3lty_A 3ltp_A* 3g18_A* 3g1d_A* 3g1f_A* 3g1h_A* 3g1a_A* 3lv6_A* 1klz_A* 3g1y_A 3g22_A* 3g24_A* 3p5z_A* 3siz_A* 3sy5_A* 1loq_A* 1lor_A* 1kly_A* ... | Back alignment and structure |
|---|
Probab=96.50 E-value=0.063 Score=46.70 Aligned_cols=110 Identities=17% Similarity=0.150 Sum_probs=64.6
Q ss_pred HHHHHHHhcCCcEEEEccCCCcH---HHHHHHHhCCCEEEE--ecCCH-----------HHHHHHHHcCCCEEEEecCCC
Q 020013 78 ENIKAILSEKVAVLQVSWGEYSE---ELVLEAHSAGVKVVP--QVGSF-----------DEARKAVNAGVDAIIVQGREA 141 (332)
Q Consensus 78 ~~~~~~~~~~~~~I~~~~g~~~~---~~i~~~~~~g~~v~~--~v~s~-----------~~a~~a~~~g~D~ivv~G~ea 141 (332)
.+++.+.+.|+|.|.+|.-.... ..++.+++.|..++. ..++. +-++.+.+.|+|++++..
T Consensus 82 ~~~~~~~~~gad~vtvh~~~G~~~l~~~~~~~~~~g~~v~vLt~~s~~~~~~~~~~~~~~~a~~a~~~G~~GvV~~a--- 158 (228)
T 3m47_A 82 KICRATFKAGADAIIVHGFPGADSVRACLNVAEEMGREVFLLTEMSHPGAEMFIQGAADEIARMGVDLGVKNYVGPS--- 158 (228)
T ss_dssp HHHHHHHHTTCSEEEEESTTCHHHHHHHHHHHHHHTCEEEEECCCCSGGGGTTHHHHHHHHHHHHHHTTCCEEECCS---
T ss_pred HHHHHHHhCCCCEEEEeccCCHHHHHHHHHHHHhcCCCeEEEEeCCCccHHHHHHHHHHHHHHHHHHhCCcEEEECC---
Confidence 36777888999999998422121 234445555655553 22322 124456788999988721
Q ss_pred CcccCCCCchhhhHHHHHHHhCCCCCcEEeecCcCCHH--HHHHHHHcCcceeeeccccccCc
Q 020013 142 GGHVIGQDGLISLLPMVVDLIGDRDIPIIAAGGIVDAR--GYVAALSLGAQGICLGTRFVASE 202 (332)
Q Consensus 142 GGh~~~~~~~~~ll~~i~~~~~~~~iPviaaGGI~~~~--~v~~al~~GA~gV~~GT~fl~t~ 202 (332)
+. ...++.+++..+. +.+ +..+||+ ++ +. +++..|||.+++|+.++.++
T Consensus 159 --t~------~~e~~~ir~~~~~-~~~-iv~PGI~-~~g~~p-~~~~aGad~iVvGr~I~~a~ 209 (228)
T 3m47_A 159 --TR------PERLSRLREIIGQ-DSF-LISPGVG-AQGGDP-GETLRFADAIIVGRSIYLAD 209 (228)
T ss_dssp --SC------HHHHHHHHHHHCS-SSE-EEECC-----------CGGGTCSEEEECHHHHTSS
T ss_pred --CC------hHHHHHHHHhcCC-CCE-EEecCcC-cCCCCH-hHHHcCCCEEEECHHHhCCC
Confidence 11 2344566666531 244 4788884 44 56 88899999999999987653
|
| >3vav_A 3-methyl-2-oxobutanoate hydroxymethyltransferase; structural genomics, seattle structural genomics center for infectious disease; 1.80A {Burkholderia thailandensis} SCOP: c.1.12.8 PDB: 3ez4_A | Back alignment and structure |
|---|
Probab=96.44 E-value=0.13 Score=45.98 Aligned_cols=144 Identities=15% Similarity=0.110 Sum_probs=91.0
Q ss_pred cceecCCCCCCCCcHHHHHHHHhCCCceee--c-------CC----CCCCHHHHHHHHHHHHhhcC-CcEEEEeec-CCC
Q 020013 11 YGIVQAPLGPDISGPELVAAVANAGGLGLL--R-------AP----DWEAPDYLRDLIRKTRSLTE-RPFGVGVVL-AFP 75 (332)
Q Consensus 11 ~Pii~apM~~g~s~~~la~avs~aGglG~i--~-------~~----~~~~~e~~~~~i~~~r~~~~-~p~gvnl~~-~~~ 75 (332)
-||+ |. +.-|...|..+.++|. ..| + .+ ...+.+++....+.++..++ .|+-+.+-. ...
T Consensus 29 ~~i~---m~-tayDa~sA~l~e~aG~-d~ilvGdSl~~~~lG~~dt~~vtldem~~h~~aV~r~~~~~~vvaD~pfgsY~ 103 (275)
T 3vav_A 29 EKIA---ML-TCYDASFAALLDRANV-DVQLIGDSLGNVLQGQTTTLPVTLDDIAYHTACVARAQPRALIVADLPFGTYG 103 (275)
T ss_dssp CCEE---EE-ECCSHHHHHHHHHTTC-SEEEECTTHHHHTTCCSSSTTCCHHHHHHHHHHHHHTCCSSEEEEECCTTSCS
T ss_pred CcEE---EE-eCcCHHHHHHHHHcCC-CEEEECcHHHHHHcCCCCCCccCHHHHHHHHHHHHhcCCCCCEEEecCCCCCC
Confidence 4665 32 4668888888888873 222 1 11 12355666666666665553 455555533 112
Q ss_pred C-HH---HHHHHHhcCCcEEEEccCCCcHHHHHHHHhCCCEEEEec-----------------CCH-------HHHHHHH
Q 020013 76 H-NE---NIKAILSEKVAVLQVSWGEYSEELVLEAHSAGVKVVPQV-----------------GSF-------DEARKAV 127 (332)
Q Consensus 76 ~-~~---~~~~~~~~~~~~I~~~~g~~~~~~i~~~~~~g~~v~~~v-----------------~s~-------~~a~~a~ 127 (332)
. ++ .+..+.++|++.|.+-.+..+.+.++.+.+.|++++..+ .+. ++++..+
T Consensus 104 s~~~a~~~a~rl~kaGa~aVklEdg~~~~~~i~~l~~~GIpv~gHlgltPq~~~~~gg~~vqgrt~~~a~~~i~rA~a~~ 183 (275)
T 3vav_A 104 TPADAFASAVKLMRAGAQMVKFEGGEWLAETVRFLVERAVPVCAHVGLTPQSVHAFGGFKVQGKTEAGAAQLLRDARAVE 183 (275)
T ss_dssp SHHHHHHHHHHHHHTTCSEEEEECCGGGHHHHHHHHHTTCCEEEEEESCGGGHHHHC---CCCCSHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCCEEEECCchhHHHHHHHHHHCCCCEEEecCCCceEEeccCCeEEEcCCHHHHHHHHHHHHHHH
Confidence 2 22 234456679999999756667889999999999997432 122 3344567
Q ss_pred HcCCCEEEEecCCCCcccCCCCchhhhHHHHHHHhCCCCCcEEeec
Q 020013 128 NAGVDAIIVQGREAGGHVIGQDGLISLLPMVVDLIGDRDIPIIAAG 173 (332)
Q Consensus 128 ~~g~D~ivv~G~eaGGh~~~~~~~~~ll~~i~~~~~~~~iPviaaG 173 (332)
++|+|.|++++. +. .+..++.+.+ ++|+|..|
T Consensus 184 eAGA~~ivlE~v----------p~-~~a~~It~~l---~iP~igIG 215 (275)
T 3vav_A 184 EAGAQLIVLEAV----------PT-LVAAEVTREL---SIPTIGIG 215 (275)
T ss_dssp HHTCSEEEEESC----------CH-HHHHHHHHHC---SSCEEEES
T ss_pred HcCCCEEEecCC----------CH-HHHHHHHHhC---CCCEEEEc
Confidence 899999999754 22 2677888887 79999654
|
| >1vhc_A Putative KHG/KDPG aldolase; structural genomics, unknown function; HET: MSE; 1.89A {Haemophilus influenzae} SCOP: c.1.10.1 | Back alignment and structure |
|---|
Probab=96.42 E-value=0.05 Score=47.24 Aligned_cols=118 Identities=13% Similarity=0.222 Sum_probs=77.5
Q ss_pred HHHHHHHhcCCcEEEEccCCC-cHHHHHHHHh-C-CCEEEE-ecCCHHHHHHHHHcCCCEEEEecCCCCcccCCCCchhh
Q 020013 78 ENIKAILSEKVAVLQVSWGEY-SEELVLEAHS-A-GVKVVP-QVGSFDEARKAVNAGVDAIIVQGREAGGHVIGQDGLIS 153 (332)
Q Consensus 78 ~~~~~~~~~~~~~I~~~~g~~-~~~~i~~~~~-~-g~~v~~-~v~s~~~a~~a~~~g~D~ivv~G~eaGGh~~~~~~~~~ 153 (332)
+.++.+++.|+++|++..-.+ ..+.++.+++ . .+.+.. .+.+.++++.+.+.|+|+|+. | + .+..
T Consensus 33 ~~~~al~~gGv~~iel~~k~~~~~~~i~~l~~~~~~l~vgaGtvl~~d~~~~A~~aGAd~v~~-----p-~-----~d~~ 101 (224)
T 1vhc_A 33 PLADTLAKNGLSVAEITFRSEAAADAIRLLRANRPDFLIAAGTVLTAEQVVLAKSSGADFVVT-----P-G-----LNPK 101 (224)
T ss_dssp HHHHHHHHTTCCEEEEETTSTTHHHHHHHHHHHCTTCEEEEESCCSHHHHHHHHHHTCSEEEC-----S-S-----CCHH
T ss_pred HHHHHHHHcCCCEEEEeccCchHHHHHHHHHHhCcCcEEeeCcEeeHHHHHHHHHCCCCEEEE-----C-C-----CCHH
Confidence 456778889999999975332 2355665544 2 344433 345789999999999999954 1 1 1233
Q ss_pred hHHHHHHHhCCCCCcEEeecCcCCHHHHHHHHHcCcceeeeccccccCccCCCCHHHHHHHhcC
Q 020013 154 LLPMVVDLIGDRDIPIIAAGGIVDARGYVAALSLGAQGICLGTRFVASEESYAHPEYKRKLVEM 217 (332)
Q Consensus 154 ll~~i~~~~~~~~iPviaaGGI~~~~~v~~al~~GA~gV~~GT~fl~t~Es~~~~~~k~~~~~~ 217 (332)
.+...++ . ++|++. |+.|+..+.+++.+|||-|.+ | ..+......+-+.+...
T Consensus 102 v~~~ar~-~---g~~~i~--Gv~t~~e~~~A~~~Gad~vk~---F--pa~~~gG~~~lk~l~~~ 154 (224)
T 1vhc_A 102 IVKLCQD-L---NFPITP--GVNNPMAIEIALEMGISAVKF---F--PAEASGGVKMIKALLGP 154 (224)
T ss_dssp HHHHHHH-T---TCCEEC--EECSHHHHHHHHHTTCCEEEE---T--TTTTTTHHHHHHHHHTT
T ss_pred HHHHHHH-h---CCCEEe--ccCCHHHHHHHHHCCCCEEEE---e--eCccccCHHHHHHHHhh
Confidence 4444444 4 678776 499999999999999999988 2 22322234555555553
|
| >3q94_A Fructose-bisphosphate aldolase, class II; structural genomics, center for structural genomics of infec diseases, csgid, alpha-beta barrel; HET: 13P; 2.30A {Bacillus anthracis} SCOP: c.1.10.0 | Back alignment and structure |
|---|
Probab=96.40 E-value=0.3 Score=43.89 Aligned_cols=135 Identities=19% Similarity=0.201 Sum_probs=87.0
Q ss_pred cCCcEEEEeecCCCCHHHHHHHHhcCCcEEEEccCCCc--------HHHHHHHHhCCCEEEE-----------------e
Q 020013 62 TERPFGVGVVLAFPHNENIKAILSEKVAVLQVSWGEYS--------EELVLEAHSAGVKVVP-----------------Q 116 (332)
Q Consensus 62 ~~~p~gvnl~~~~~~~~~~~~~~~~~~~~I~~~~g~~~--------~~~i~~~~~~g~~v~~-----------------~ 116 (332)
.+.|+.+++=--. +.+.+..+++.|...|-+.....| .++++.++..|+.|=. .
T Consensus 79 ~~VPValHlDHg~-~~e~i~~ai~~GFtSVMiDgS~~p~eeNi~~Tk~vv~~ah~~gvsVEaElG~vgG~Ed~~~~~~~~ 157 (288)
T 3q94_A 79 ITVPVAIHLDHGS-SFEKCKEAIDAGFTSVMIDASHHPFEENVETTKKVVEYAHARNVSVEAELGTVGGQEDDVIAEGVI 157 (288)
T ss_dssp CCSCEEEEEEEEC-SHHHHHHHHHHTCSEEEECCTTSCHHHHHHHHHHHHHHHHTTTCEEEEEESBCBCSCSSCGGGGCB
T ss_pred CCCcEEEECCCCC-CHHHHHHHHHcCCCeEEEeCCCCCHHHHHHHHHHHHHHHHHcCCeEEEEeeeeccccCCcCCcccc
Confidence 4456666542211 245566666677776666533222 2455666777776531 1
Q ss_pred cCCHHHHHHHH-HcCCCEEEE-ecCCCCcccCCCCchhhhHHHHHHHhCCCCCcEEeecCcC-CHHHHHHHHHcCcceee
Q 020013 117 VGSFDEARKAV-NAGVDAIIV-QGREAGGHVIGQDGLISLLPMVVDLIGDRDIPIIAAGGIV-DARGYVAALSLGAQGIC 193 (332)
Q Consensus 117 v~s~~~a~~a~-~~g~D~ivv-~G~eaGGh~~~~~~~~~ll~~i~~~~~~~~iPviaaGGI~-~~~~v~~al~~GA~gV~ 193 (332)
.++++++.... +.|+|.+-+ .|.-=|-..+.+.-.+.+|.++.+.+ ++|++.-||=+ ..+++.+++..|..-|=
T Consensus 158 yT~Peea~~Fv~~TgvD~LAvaiGt~HG~Y~~~p~Ld~~~L~~I~~~v---~vpLVlHGgSG~~~e~i~~ai~~Gv~KiN 234 (288)
T 3q94_A 158 YADPAECKHLVEATGIDCLAPALGSVHGPYKGEPNLGFAEMEQVRDFT---GVPLVLHGGTGIPTADIEKAISLGTSKIN 234 (288)
T ss_dssp CCCHHHHHHHHHHHCCSEEEECSSCBSSCCSSSCCCCHHHHHHHHHHH---CSCEEECCCTTCCHHHHHHHHHTTEEEEE
T ss_pred CCCHHHHHHHHHHHCCCEEEEEcCcccCCcCCCCccCHHHHHHHHHhc---CCCEEEeCCCCCCHHHHHHHHHcCCeEEE
Confidence 36789998876 579999877 23321222212234588999999988 79999876543 45679999999999999
Q ss_pred ecccccc
Q 020013 194 LGTRFVA 200 (332)
Q Consensus 194 ~GT~fl~ 200 (332)
++|-+..
T Consensus 235 i~Tdl~~ 241 (288)
T 3q94_A 235 VNTENQI 241 (288)
T ss_dssp ECHHHHH
T ss_pred EChHHHH
Confidence 9888643
|
| >2isw_A Putative fructose-1,6-bisphosphate aldolase; class II fructose-1,6-bisphosphate aldolase, glycolytic pathway, giardia lamblia, drug target; HET: PGH; 1.75A {Giardia intestinalis} PDB: 2isv_A* 3ohi_A* 3gay_A* 3gak_A* 3gb6_A* | Back alignment and structure |
|---|
Probab=96.36 E-value=0.23 Score=45.30 Aligned_cols=144 Identities=24% Similarity=0.298 Sum_probs=87.5
Q ss_pred HHHHHHHHHhh-cCCcEEEEeecCCCCHHHHHHHHhcCCcEEEEccCCCc--------HHHHHHHHhCCCEEEE------
Q 020013 51 LRDLIRKTRSL-TERPFGVGVVLAFPHNENIKAILSEKVAVLQVSWGEYS--------EELVLEAHSAGVKVVP------ 115 (332)
Q Consensus 51 ~~~~i~~~r~~-~~~p~gvnl~~~~~~~~~~~~~~~~~~~~I~~~~g~~~--------~~~i~~~~~~g~~v~~------ 115 (332)
+...+....+. .+.|+.+++=-- ...+.+..+++.|...|-+.....| .++++.++..|+.|=.
T Consensus 62 ~~~~v~~aa~~~~~VPValHlDHg-~~~e~i~~ai~~GFtSVMiDgS~~p~eENi~~Tk~vv~~ah~~gvsVEaELG~vg 140 (323)
T 2isw_A 62 LKKLCEAALEKHPDIPICIHLDHG-DTLESVKMAIDLGFSSVMIDASHHPFDENVRITKEVVAYAHARSVSVEAELGTLG 140 (323)
T ss_dssp HHHHHHHHHHHCTTSCEEEEEEEE-CSHHHHHHHHHTTCSEEEECCTTSCHHHHHHHHHHHHHHHHTTTCEEEEEESCC-
T ss_pred HHHHHHHHHHhcCCCcEEEECCCC-CCHHHHHHHHHcCCCeEEecCCCCCHHHHHHHHHHHHHHHHHcCCeEEEEeCCcc
Confidence 33344433333 445666554221 1245667777777777766533222 2455666666765521
Q ss_pred ----------ecCCHHHHHHHH-HcCCCEEEE-ecCCCCccc--CCCC--chhhhHHHHHHHhCCCCCcEEeec------
Q 020013 116 ----------QVGSFDEARKAV-NAGVDAIIV-QGREAGGHV--IGQD--GLISLLPMVVDLIGDRDIPIIAAG------ 173 (332)
Q Consensus 116 ----------~v~s~~~a~~a~-~~g~D~ivv-~G~eaGGh~--~~~~--~~~~ll~~i~~~~~~~~iPviaaG------ 173 (332)
..++++++.... +.|+|.+-+ .|.-=|-.. +.+. -.+.+|.++.+.+ ++|++.-|
T Consensus 141 g~Ed~v~~~~~yTdPeea~~Fv~~TgvD~LAvaiGt~HG~Yk~~~~p~~~L~~~~L~~I~~~~---~vpLVlHGgSsvp~ 217 (323)
T 2isw_A 141 GIEEDVQNTVQLTEPQDAKKFVELTGVDALAVAIGTSHGAYKFKSESDIRLAIDRVKTISDLT---GIPLVMHGSSSVPK 217 (323)
T ss_dssp ---------CCCCCHHHHHHHHHHHCCSEEEECSSCCSSSBCCCC----CCCCHHHHHHHHHH---CSCEEECSCCCCCH
T ss_pred CCccCcccccccCCHHHHHHHHHHHCCCEEEEecCccccccCCCCCcccccCHHHHHHHHHHh---CCCeEEECCCCCCH
Confidence 126788888876 579998877 233222221 1122 3478899999988 79999999
Q ss_pred -----------------CcCCHHHHHHHHHcCcceeeeccccc
Q 020013 174 -----------------GIVDARGYVAALSLGAQGICLGTRFV 199 (332)
Q Consensus 174 -----------------GI~~~~~v~~al~~GA~gV~~GT~fl 199 (332)
|+ ..+++.+++.+|..-|=++|-+-
T Consensus 218 ~~~~~~~~~gg~~~~~~Gv-p~e~i~~ai~~GV~KiNi~Tdl~ 259 (323)
T 2isw_A 218 DVKDMINKYGGKMPDAVGV-PIESIVHAIGEGVCKINVDSDSR 259 (323)
T ss_dssp HHHHHHHHTTCCCTTCBCC-CHHHHHHHHHTTEEEEEECHHHH
T ss_pred HHHHHHHHhccccccCCCC-CHHHHHHHHHCCCeEEEEChHHH
Confidence 77 56778888888877777777654
|
| >1ypf_A GMP reductase; GUAC, purines, pyrimidines, nucleosides, nucleotides, nucleo nucleoside interconversions, spine, structural genomics; 1.80A {Bacillus anthracis} PDB: 2a1y_A* | Back alignment and structure |
|---|
Probab=96.33 E-value=0.034 Score=51.37 Aligned_cols=88 Identities=14% Similarity=0.200 Sum_probs=60.8
Q ss_pred HHHHHHHHhCCCEEEEecCC-H---HHHHHHHHcC--CCEEEEecCCCCcccCCCCchhhhHHHHHHHhCCCCCcEEeec
Q 020013 100 EELVLEAHSAGVKVVPQVGS-F---DEARKAVNAG--VDAIIVQGREAGGHVIGQDGLISLLPMVVDLIGDRDIPIIAAG 173 (332)
Q Consensus 100 ~~~i~~~~~~g~~v~~~v~s-~---~~a~~a~~~g--~D~ivv~G~eaGGh~~~~~~~~~ll~~i~~~~~~~~iPviaaG 173 (332)
.++++++++.+.++...+.. . +.++.+.+.| +|+|.+... .| .....+..+..+++.. +.|++..|
T Consensus 84 ~~~i~~~~~~g~~v~v~~g~~~~~~~~a~~~~~~g~~~~~i~i~~~--~G---~~~~~~~~i~~lr~~~---~~~~vi~G 155 (336)
T 1ypf_A 84 ISFIRDMQSRGLIASISVGVKEDEYEFVQQLAAEHLTPEYITIDIA--HG---HSNAVINMIQHIKKHL---PESFVIAG 155 (336)
T ss_dssp HHHHHHHHHTTCCCEEEECCSHHHHHHHHHHHHTTCCCSEEEEECS--SC---CSHHHHHHHHHHHHHC---TTSEEEEE
T ss_pred HHHHHHHHhcCCeEEEeCCCCHHHHHHHHHHHhcCCCCCEEEEECC--CC---CcHHHHHHHHHHHHhC---CCCEEEEC
Confidence 35566666677666655542 3 3455667888 999877432 12 2234577888888876 33455567
Q ss_pred CcCCHHHHHHHHHcCcceeeec
Q 020013 174 GIVDARGYVAALSLGAQGICLG 195 (332)
Q Consensus 174 GI~~~~~v~~al~~GA~gV~~G 195 (332)
+|.+.+++..+..+|||+|.++
T Consensus 156 ~v~s~e~A~~a~~aGad~Ivvs 177 (336)
T 1ypf_A 156 NVGTPEAVRELENAGADATKVG 177 (336)
T ss_dssp EECSHHHHHHHHHHTCSEEEEC
T ss_pred CcCCHHHHHHHHHcCCCEEEEe
Confidence 6889999999999999999994
|
| >3qja_A IGPS, indole-3-glycerol phosphate synthase; structural genomics, T structural genomics consortium, TBSGC, lyase; 1.29A {Mycobacterium tuberculosis} PDB: 3t40_A* 3t44_A* 3t55_A* 3t78_A* 4fb7_A* | Back alignment and structure |
|---|
Probab=96.26 E-value=0.011 Score=53.09 Aligned_cols=73 Identities=18% Similarity=0.156 Sum_probs=55.5
Q ss_pred HHHHHHHHHcCCCEEEEecCCCCcccCCCCchhhhHHHHHHHhCCCCCcEEeecCcCCHHHHHHHHHcCcceeeeccccc
Q 020013 120 FDEARKAVNAGVDAIIVQGREAGGHVIGQDGLISLLPMVVDLIGDRDIPIIAAGGIVDARGYVAALSLGAQGICLGTRFV 199 (332)
Q Consensus 120 ~~~a~~a~~~g~D~ivv~G~eaGGh~~~~~~~~~ll~~i~~~~~~~~iPviaaGGI~~~~~v~~al~~GA~gV~~GT~fl 199 (332)
.+.|+..++.|+++|-+---+ + + -.+.+..+.++++.+ ++||+.-+.|-|..++.++..+|||+|.++.+.+
T Consensus 75 ~~~A~~y~~~GA~~isvltd~-~-~---f~Gs~~~l~~ir~~v---~lPvl~kdfiid~~qv~~A~~~GAD~VlLi~a~l 146 (272)
T 3qja_A 75 AKLAQAYQDGGARIVSVVTEQ-R-R---FQGSLDDLDAVRASV---SIPVLRKDFVVQPYQIHEARAHGADMLLLIVAAL 146 (272)
T ss_dssp HHHHHHHHHTTCSEEEEECCG-G-G---HHHHHHHHHHHHHHC---SSCEEEESCCCSHHHHHHHHHTTCSEEEEEGGGS
T ss_pred HHHHHHHHHcCCCEEEEecCh-h-h---cCCCHHHHHHHHHhC---CCCEEECccccCHHHHHHHHHcCCCEEEEecccC
Confidence 345677778999999773110 0 0 013466788888877 7999999988899899999999999999998866
Q ss_pred c
Q 020013 200 A 200 (332)
Q Consensus 200 ~ 200 (332)
.
T Consensus 147 ~ 147 (272)
T 3qja_A 147 E 147 (272)
T ss_dssp C
T ss_pred C
Confidence 4
|
| >4af0_A Inosine-5'-monophosphate dehydrogenase; oxidoreductase, GTP biosynthesis, drug resistance; HET: MOA IMP; 2.20A {Cryptococcus neoformans} PDB: 4af0_B* | Back alignment and structure |
|---|
Probab=96.23 E-value=0.0094 Score=57.98 Aligned_cols=180 Identities=18% Similarity=0.313 Sum_probs=103.1
Q ss_pred chhhcCCccceecCCCCCCCCcHHHHHHHHhCCCceeecCCCCCCHHHHHHHHHHHHhhcC----CcEEE----------
Q 020013 3 WRGMLGFEYGIVQAPLGPDISGPELVAAVANAGGLGLLRAPDWEAPDYLRDLIRKTRSLTE----RPFGV---------- 68 (332)
Q Consensus 3 ~~~~l~~~~Pii~apM~~g~s~~~la~avs~aGglG~i~~~~~~~~e~~~~~i~~~r~~~~----~p~gv---------- 68 (332)
+++.+.++.|||.+||. .++.++||.++++.||+|+|.- + +++|+-.++++++|..-. .|+-+
T Consensus 85 lt~~i~L~iPlvSA~MD-TVTe~~MAIamAr~GGiGvIH~-n-~sie~Qa~~V~~VKr~e~g~i~dPvtl~P~~Tv~da~ 161 (556)
T 4af0_A 85 ATKNIVLNTPFLSSPMD-TVTEDRMAIALALHGGLGIIHH-N-CSAEEQAAMVRRVKKYENGFITDPLCLGPDATVGDVL 161 (556)
T ss_dssp EETTEEESSCEEECCCT-TTCSHHHHHHHHHTTCEEEECC-S-SCHHHHHHHHHHHHHCCC-------------------
T ss_pred ccCCcEeCCCEEecCcc-cccCHHHHHHHHHCCCeEEEcC-C-CCHHHHHHHHHHHHhcccCccCCCeEcCCCCCHHHHH
Confidence 44666788899999998 7999999999999999999986 3 688887888888875311 12111
Q ss_pred ------------------------EeecCCCC-----HHHHHHHHhcCCcEEEEccCCCcHHHHHHHHhC----------
Q 020013 69 ------------------------GVVLAFPH-----NENIKAILSEKVAVLQVSWGEYSEELVLEAHSA---------- 109 (332)
Q Consensus 69 ------------------------nl~~~~~~-----~~~~~~~~~~~~~~I~~~~g~~~~~~i~~~~~~---------- 109 (332)
+++.+.+. ...+..+.. .+.|....+..+.+..+.+++.
T Consensus 162 ~l~~~~~isgvpVvd~g~~~~kLvGIvT~RD~rf~d~~~~V~evMT--~~lvt~~~~~~leeA~~iL~~~kieklpVVd~ 239 (556)
T 4af0_A 162 EIKAKFGFCGVPITETGEPDSKLLGIVTGRDVQFQDAETPIKSVMT--TEVVTGSSPITLEKANSLLRETKKGKLPIVDS 239 (556)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHhCCCccccccccCcCCEEEEEEecccccccccceEhhhhcc--cceEEecCCCCHHHHHHHHHHccccceeEEcc
Confidence 01100000 000000000 0112111111111111111111
Q ss_pred ----------------------------C-CEEEEecC----CHHHHHHHHHcCCCEEEEecCCCCcccCCCCchhhhHH
Q 020013 110 ----------------------------G-VKVVPQVG----SFDEARKAVNAGVDAIIVQGREAGGHVIGQDGLISLLP 156 (332)
Q Consensus 110 ----------------------------g-~~v~~~v~----s~~~a~~a~~~g~D~ivv~G~eaGGh~~~~~~~~~ll~ 156 (332)
| ..|...|+ ..+.+..+.++|+|+|+++... ||. ...+..++
T Consensus 240 ~g~LvGlIT~kDi~k~~~~p~A~k~d~~grL~VgAAVgv~~d~~eR~~aLv~AGvD~iviD~ah--Ghs---~~v~~~i~ 314 (556)
T 4af0_A 240 NGHLVSLVARSDLLKNQNYPYASKVPESKQLYCGAAIGTRPGDKDRLKLLAEAGLDVVVLDSSQ--GNS---VYQIEFIK 314 (556)
T ss_dssp ------------------CTTCCBCTTTCCBCCEEEECSSHHHHHHHHHHHHTTCCEEEECCSC--CCS---HHHHHHHH
T ss_pred CCcEEEEEEechhhhhhhCCcchhcchhhceeeEEEeccCccHHHHHHHHHhcCCcEEEEeccc--ccc---HHHHHHHH
Confidence 0 12233333 2344566789999999997652 443 34577888
Q ss_pred HHHHHhCCCCCcEEeecCcCCHHHHHHHHHcCcceeeec
Q 020013 157 MVVDLIGDRDIPIIAAGGIVDARGYVAALSLGAQGICLG 195 (332)
Q Consensus 157 ~i~~~~~~~~iPviaaGGI~~~~~v~~al~~GA~gV~~G 195 (332)
.+++..+ ++||| +|.|.|++.+..++.+|||+|-+|
T Consensus 315 ~ik~~~p--~~~vi-aGNVaT~e~a~~Li~aGAD~vkVG 350 (556)
T 4af0_A 315 WIKQTYP--KIDVI-AGNVVTREQAAQLIAAGADGLRIG 350 (556)
T ss_dssp HHHHHCT--TSEEE-EEEECSHHHHHHHHHHTCSEEEEC
T ss_pred HHHhhCC--cceEE-eccccCHHHHHHHHHcCCCEEeec
Confidence 8888764 56665 588999999999999999999775
|
| >1o66_A 3-methyl-2-oxobutanoate hydroxymethyltransferase; structural genomics; HET: MSE; 1.75A {Neisseria meningitidis serogroup B} SCOP: c.1.12.8 PDB: 1o68_A* | Back alignment and structure |
|---|
Probab=96.23 E-value=0.27 Score=43.78 Aligned_cols=146 Identities=14% Similarity=0.161 Sum_probs=90.6
Q ss_pred cceecCCCCCCCCcHHHHHHHHhCCCceee-c-------CC----CCCCHHHHHHHHHHHHhhcCCcEE-EEeec-CC--
Q 020013 11 YGIVQAPLGPDISGPELVAAVANAGGLGLL-R-------AP----DWEAPDYLRDLIRKTRSLTERPFG-VGVVL-AF-- 74 (332)
Q Consensus 11 ~Pii~apM~~g~s~~~la~avs~aGglG~i-~-------~~----~~~~~e~~~~~i~~~r~~~~~p~g-vnl~~-~~-- 74 (332)
-||+ |. +.-|...|..+.++|.=-++ + .+ ...+.+++....+.++..++.|+- +.+-. ..
T Consensus 17 ~~i~---~~-tayDa~sA~l~e~aG~d~ilvGdSl~~~~lG~~dt~~vTldemi~h~~aV~r~~~~~~vvaD~pfgsy~~ 92 (275)
T 1o66_A 17 EKIA---ML-TAYESSFAALMDDAGVEMLLVGDSLGMAVQGRKSTLPVSLRDMCYHTECVARGAKNAMIVSDLPFGAYQQ 92 (275)
T ss_dssp CCEE---EE-ECCSHHHHHHHHHTTCCEEEECTTHHHHTTCCSSSTTCCHHHHHHHHHHHHHHCSSSEEEEECCTTSSSS
T ss_pred CcEE---EE-eCcCHHHHHHHHHcCCCEEEECHHHHHHHcCCCCCCCCCHHHHHHHHHHHHhhCCCCeEEEECCCCCccC
Confidence 4665 32 46788888888888731111 1 11 123567776667777666665543 44322 11
Q ss_pred CCHHHH---HHHHhcCCcEEEEccCCCcHHHHHHHHhCCCEEEEecC-----------------C------HHHHHHHHH
Q 020013 75 PHNENI---KAILSEKVAVLQVSWGEYSEELVLEAHSAGVKVVPQVG-----------------S------FDEARKAVN 128 (332)
Q Consensus 75 ~~~~~~---~~~~~~~~~~I~~~~g~~~~~~i~~~~~~g~~v~~~v~-----------------s------~~~a~~a~~ 128 (332)
..++.+ ..+.+.|++.|.+-.|..-.+.++.+.+.|++|+..++ + .++|+..++
T Consensus 93 s~~~a~~na~rl~kaGa~aVklEdg~e~~~~I~al~~agIpV~gHiGLtPQs~~~~ggf~v~grt~~a~~~i~rA~a~~e 172 (275)
T 1o66_A 93 SKEQAFAAAAELMAAGAHMVKLEGGVWMAETTEFLQMRGIPVCAHIGLTPQSVFAFGGYKVQGRGGKAQALLNDAKAHDD 172 (275)
T ss_dssp CHHHHHHHHHHHHHTTCSEEEEECSGGGHHHHHHHHHTTCCEEEEEESCGGGTTC-----------CHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCcEEEECCcHHHHHHHHHHHHcCCCeEeeeccCceeecccCCeEEEeChHHHHHHHHHHHHHHH
Confidence 112223 35666899999986454456788888899998873221 1 224456678
Q ss_pred cCCCEEEEecCCCCcccCCCCchhhhHHHHHHHhCCCCCcEEeecC
Q 020013 129 AGVDAIIVQGREAGGHVIGQDGLISLLPMVVDLIGDRDIPIIAAGG 174 (332)
Q Consensus 129 ~g~D~ivv~G~eaGGh~~~~~~~~~ll~~i~~~~~~~~iPviaaGG 174 (332)
+|||.|++++. + ..+..++.+.+ ++|+|..|.
T Consensus 173 AGA~~ivlE~v----------p-~~~a~~it~~l---~iP~igIGa 204 (275)
T 1o66_A 173 AGAAVVLMECV----------L-AELAKKVTETV---SCPTIGIGA 204 (275)
T ss_dssp TTCSEEEEESC----------C-HHHHHHHHHHC---SSCEEEESS
T ss_pred cCCcEEEEecC----------C-HHHHHHHHHhC---CCCEEEECC
Confidence 99999999753 1 24677888887 799997553
|
| >1n7k_A Deoxyribose-phosphate aldolase; A.pernix, tetramer, alpha-beta TIM barrel, riken S genomics/proteomics initiative, RSGI, structural genomics,; 2.00A {Aeropyrum pernix} SCOP: c.1.10.1 | Back alignment and structure |
|---|
Probab=96.21 E-value=0.0084 Score=52.52 Aligned_cols=110 Identities=21% Similarity=0.282 Sum_probs=68.2
Q ss_pred HHHHHHhcCCcEEEEc--cCCCcHHHH-------HHHHhCCCEE--EEec--CCHHHH----HHHHHcCCCEEEEe-cCC
Q 020013 79 NIKAILSEKVAVLQVS--WGEYSEELV-------LEAHSAGVKV--VPQV--GSFDEA----RKAVNAGVDAIIVQ-GRE 140 (332)
Q Consensus 79 ~~~~~~~~~~~~I~~~--~g~~~~~~i-------~~~~~~g~~v--~~~v--~s~~~a----~~a~~~g~D~ivv~-G~e 140 (332)
..+.+++.|+|-|.+. .|.....+. +.+++.|+++ +... .+.++. +.+.++|+|+|... |+.
T Consensus 93 e~~~Av~~GAdEID~vinig~~~~~v~~ei~~v~~a~~~~g~~lKvIlEt~~L~~e~i~~a~ria~eaGADfVKTsTG~~ 172 (234)
T 1n7k_A 93 EAQTVLEAGATELDVVPHLSLGPEAVYREVSGIVKLAKSYGAVVKVILEAPLWDDKTLSLLVDSSRRAGADIVKTSTGVY 172 (234)
T ss_dssp HHHHHHHHTCCEEEECCCGGGCHHHHHHHHHHHHHHHHHTTCEEEEECCGGGSCHHHHHHHHHHHHHTTCSEEESCCSSS
T ss_pred HHHHHHHcCCCEEEEeccchHHHHHHHHHHHHHHHHHhhcCCeEEEEEeccCCCHHHHHHHHHHHHHhCCCEEEeCCCCC
Confidence 3567788899999875 343222222 2233445653 4322 244543 34578999999863 342
Q ss_pred C-CcccCCCCchhhhHHH--HHHHhCCCCCcEEeecCcCCHHHHHHHHHcCcc--eeeeccc
Q 020013 141 A-GGHVIGQDGLISLLPM--VVDLIGDRDIPIIAAGGIVDARGYVAALSLGAQ--GICLGTR 197 (332)
Q Consensus 141 a-GGh~~~~~~~~~ll~~--i~~~~~~~~iPviaaGGI~~~~~v~~al~~GA~--gV~~GT~ 197 (332)
. +| .+..-+.. +++.+ ++||.++|||.+.+++.+++.+||+ |+-.|..
T Consensus 173 ~~~g------At~~dv~l~~m~~~v---~v~VKaaGGirt~~~al~~i~aGa~RiG~S~g~~ 225 (234)
T 1n7k_A 173 TKGG------DPVTVFRLASLAKPL---GMGVKASGGIRSGIDAVLAVGAGADIIGTSSAVK 225 (234)
T ss_dssp CCCC------SHHHHHHHHHHHGGG---TCEEEEESSCCSHHHHHHHHHTTCSEEEETTHHH
T ss_pred CCCC------CCHHHHHHHHHHHHH---CCCEEEecCCCCHHHHHHHHHcCccccchHHHHH
Confidence 2 22 23333334 56656 3899999999999999999999999 5544443
|
| >4fo4_A Inosine 5'-monophosphate dehydrogenase; structural genomics, IMPDH, IMP, mycophenolic acid, MOA; HET: IMP MOA; 2.03A {Vibrio cholerae o1 biovar el tor} PDB: 4ff0_A* 4hlv_A* 4fez_A | Back alignment and structure |
|---|
Probab=96.18 E-value=0.11 Score=48.42 Aligned_cols=101 Identities=22% Similarity=0.405 Sum_probs=66.0
Q ss_pred hcCCcEEEEccCCCcHHH---HHHHHhCC-CEEEEec----CCHHHHHHHHHcCCCEEEEecCCCCcccCCCCchhhhHH
Q 020013 85 SEKVAVLQVSWGEYSEEL---VLEAHSAG-VKVVPQV----GSFDEARKAVNAGVDAIIVQGREAGGHVIGQDGLISLLP 156 (332)
Q Consensus 85 ~~~~~~I~~~~g~~~~~~---i~~~~~~g-~~v~~~v----~s~~~a~~a~~~g~D~ivv~G~eaGGh~~~~~~~~~ll~ 156 (332)
+-+.-++..+ ..++++ ++.+++.+ ..+...+ ...+.+..+.++|+|+|+++.. .||. ......++
T Consensus 69 aGGlg~i~~~--~s~e~~~~~i~~vk~~~~l~vga~vg~~~~~~~~~~~lieaGvd~I~idta--~G~~---~~~~~~I~ 141 (366)
T 4fo4_A 69 EGGIGFIHKN--MSIEQQAAQVHQVKISGGLRVGAAVGAAPGNEERVKALVEAGVDVLLIDSS--HGHS---EGVLQRIR 141 (366)
T ss_dssp TTCEEEECSS--SCHHHHHHHHHHHHTTTSCCCEEECCSCTTCHHHHHHHHHTTCSEEEEECS--CTTS---HHHHHHHH
T ss_pred cCCceEeecC--CCHHHHHHHHHHHHhcCceeEEEEeccChhHHHHHHHHHhCCCCEEEEeCC--CCCC---HHHHHHHH
Confidence 3455555433 334444 44555432 2333333 3467888899999999998632 3332 23455677
Q ss_pred HHHHHhCCCCCcEEeecCcCCHHHHHHHHHcCcceeeec
Q 020013 157 MVVDLIGDRDIPIIAAGGIVDARGYVAALSLGAQGICLG 195 (332)
Q Consensus 157 ~i~~~~~~~~iPviaaGGI~~~~~v~~al~~GA~gV~~G 195 (332)
++++..+ ++||++ |.+.+.+.+.++..+|||+|.+|
T Consensus 142 ~ik~~~p--~v~Vi~-G~v~t~e~A~~a~~aGAD~I~vG 177 (366)
T 4fo4_A 142 ETRAAYP--HLEIIG-GNVATAEGARALIEAGVSAVKVG 177 (366)
T ss_dssp HHHHHCT--TCEEEE-EEECSHHHHHHHHHHTCSEEEEC
T ss_pred HHHHhcC--CCceEe-eeeCCHHHHHHHHHcCCCEEEEe
Confidence 7777653 577766 66789999999999999999995
|
| >1jvn_A Glutamine, bifunctional histidine biosynthesis protein hishf; substrate channeling, amidotransferase, TIM-barrel AS A SUBS tunnel; HET: 143; 2.10A {Saccharomyces cerevisiae} SCOP: c.1.2.1 c.23.16.1 PDB: 1ox4_B* 1ox5_A* 1ox6_A 1ox4_A | Back alignment and structure |
|---|
Probab=96.17 E-value=0.009 Score=59.12 Aligned_cols=78 Identities=19% Similarity=0.262 Sum_probs=55.9
Q ss_pred HHHHHHHHHcCCCEEEEecCCCCcc-cCCCCchhhhHHHHHHHhCCCCCcEEeecCcCCH-----------HHHHHHHHc
Q 020013 120 FDEARKAVNAGVDAIIVQGREAGGH-VIGQDGLISLLPMVVDLIGDRDIPIIAAGGIVDA-----------RGYVAALSL 187 (332)
Q Consensus 120 ~~~a~~a~~~g~D~ivv~G~eaGGh-~~~~~~~~~ll~~i~~~~~~~~iPviaaGGI~~~-----------~~v~~al~~ 187 (332)
++.|+...+.|+|.+.+-.-.+.-. .........++.++.+.+ .+||+..|||.+. +++.+++.+
T Consensus 283 ~~~A~~~~~~Ga~~l~~~dl~~~~~~~~~~~~~~~~i~~i~~~~---~ipi~vgGGIr~~~d~~~~~~~~~~~a~~~l~a 359 (555)
T 1jvn_A 283 VQLAQKYYQQGADEVTFLNITSFRDCPLKDTPMLEVLKQAAKTV---FVPLTVGGGIKDIVDVDGTKIPALEVASLYFRS 359 (555)
T ss_dssp HHHHHHHHHTTCSEEEEEEEC---CCCGGGCHHHHHHHHHTTTC---CSCEEEESSCSCEECTTCCEECHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCEEEEEeCCccccccCCCchHHHHHHHHHhhC---CCcEEEeCccccchhcccccchHHHHHHHHHHc
Confidence 3456777788999998754432110 001123466777776655 7999999999998 559999999
Q ss_pred Ccceeeecccccc
Q 020013 188 GAQGICLGTRFVA 200 (332)
Q Consensus 188 GA~gV~~GT~fl~ 200 (332)
|||.|.+||..+.
T Consensus 360 Gad~V~igt~~~~ 372 (555)
T 1jvn_A 360 GADKVSIGTDAVY 372 (555)
T ss_dssp TCSEEEECHHHHH
T ss_pred CCCEEEECCHHhh
Confidence 9999999999864
|
| >1wbh_A KHG/KDPG aldolase; lyase; 1.55A {Escherichia coli} SCOP: c.1.10.1 PDB: 2c0a_A 1wau_A 1eua_A 1eun_A 1fq0_A* 1fwr_A* | Back alignment and structure |
|---|
Probab=96.14 E-value=0.17 Score=43.55 Aligned_cols=118 Identities=18% Similarity=0.173 Sum_probs=76.3
Q ss_pred HHHHHHHhcCCcEEEEccCCC-cHHHHHHHHh-C-CCEEE-EecCCHHHHHHHHHcCCCEEEEecCCCCcccCCCCchhh
Q 020013 78 ENIKAILSEKVAVLQVSWGEY-SEELVLEAHS-A-GVKVV-PQVGSFDEARKAVNAGVDAIIVQGREAGGHVIGQDGLIS 153 (332)
Q Consensus 78 ~~~~~~~~~~~~~I~~~~g~~-~~~~i~~~~~-~-g~~v~-~~v~s~~~a~~a~~~g~D~ivv~G~eaGGh~~~~~~~~~ 153 (332)
+.++.+++.|+++|++..-.+ ..+.++.+++ . .+.+. ..+.+.++++.+.+.|+|+|+. | +. +..
T Consensus 32 ~~~~al~~gGv~~iel~~k~~~~~~~i~~l~~~~~~~~vgagtvi~~d~~~~A~~aGAd~v~~-----p-~~-----d~~ 100 (214)
T 1wbh_A 32 PMAKALVAGGVRVLNVTLRTECAVDAIRAIAKEVPEAIVGAGTVLNPQQLAEVTEAGAQFAIS-----P-GL-----TEP 100 (214)
T ss_dssp HHHHHHHHTTCCEEEEESCSTTHHHHHHHHHHHCTTSEEEEESCCSHHHHHHHHHHTCSCEEE-----S-SC-----CHH
T ss_pred HHHHHHHHcCCCEEEEeCCChhHHHHHHHHHHHCcCCEEeeCEEEEHHHHHHHHHcCCCEEEc-----C-CC-----CHH
Confidence 457778888999999975332 2355665543 2 33333 3456779999999999999975 2 21 122
Q ss_pred hHHHHHHHhCCCCCcEEeecCcCCHHHHHHHHHcCcceeeeccccccCccCCCCHHHHHHHhcC
Q 020013 154 LLPMVVDLIGDRDIPIIAAGGIVDARGYVAALSLGAQGICLGTRFVASEESYAHPEYKRKLVEM 217 (332)
Q Consensus 154 ll~~i~~~~~~~~iPviaaGGI~~~~~v~~al~~GA~gV~~GT~fl~t~Es~~~~~~k~~~~~~ 217 (332)
.+.. +... ++|++. |+.|+..+.+++.+|||-|.+ | ..+......+-+.+...
T Consensus 101 v~~~-~~~~---g~~~i~--G~~t~~e~~~A~~~Gad~v~~---F--pa~~~gG~~~lk~i~~~ 153 (214)
T 1wbh_A 101 LLKA-ATEG---TIPLIP--GISTVSELMLGMDYGLKEFKF---F--PAEANGGVKALQAIAGP 153 (214)
T ss_dssp HHHH-HHHS---SSCEEE--EESSHHHHHHHHHTTCCEEEE---T--TTTTTTHHHHHHHHHTT
T ss_pred HHHH-HHHh---CCCEEE--ecCCHHHHHHHHHCCCCEEEE---e--cCccccCHHHHHHHhhh
Confidence 3322 3333 678876 499999999999999999988 2 22332224555555543
|
| >3ve9_A Orotidine-5'-phosphate decarboxylase; TIM barrel fold, orotidine 5'-monopho decarboxylase, lyase; 1.45A {Metallosphaera sedula} PDB: 3ve7_A | Back alignment and structure |
|---|
Probab=96.11 E-value=0.025 Score=48.83 Aligned_cols=133 Identities=12% Similarity=0.005 Sum_probs=77.7
Q ss_pred HHHHHhhcCCcEEEEeecCCCC---HHHHHHHHhcCCcEEEEccCCCcHHHHHHHH-hCCCEEEEecCC--------HHH
Q 020013 55 IRKTRSLTERPFGVGVVLAFPH---NENIKAILSEKVAVLQVSWGEYSEELVLEAH-SAGVKVVPQVGS--------FDE 122 (332)
Q Consensus 55 i~~~r~~~~~p~gvnl~~~~~~---~~~~~~~~~~~~~~I~~~~g~~~~~~i~~~~-~~g~~v~~~v~s--------~~~ 122 (332)
++.+++..+.++-..+-..+-. ....+.+.+. +|++.+|.-.-..+.++.+. ..++.++...++ .+-
T Consensus 42 v~~L~~~~g~~VflDlK~~DIpnTv~~a~~~~~~~-ad~vTvh~~~G~~~~~~~~~~~~~v~vLts~s~~~~~~~~v~~~ 120 (215)
T 3ve9_A 42 VKELVGLVDGIKILDLKLADIDNTMILIVDELKDI-TNSFIAHAFVGVEGSLASLSQRVDLFLVLSMSHPGWNDAFYPYL 120 (215)
T ss_dssp HHHHHTTCCSEEEEEEEECSCHHHHHHHHHHHTTT-CSEEEEEGGGCTTTTHHHHHHHSEEEEECCCSSTTCCGGGHHHH
T ss_pred HHHHHHhcCCcEEEEecccCchhHHHHHHHHHHHh-hheEEEeCCCCcHHHHHhHhcCCCEEEEEecCCcchHHHHHHHH
Confidence 4555543244554444433211 2234566677 99999873111012333331 223333322222 335
Q ss_pred HHHHHHcCCCEEEEecCCCCcccCCCCchhhhHHHHHHHhCCCCCcEEeecCcCCHH--HHHHHHHcCcceeeecccccc
Q 020013 123 ARKAVNAGVDAIIVQGREAGGHVIGQDGLISLLPMVVDLIGDRDIPIIAAGGIVDAR--GYVAALSLGAQGICLGTRFVA 200 (332)
Q Consensus 123 a~~a~~~g~D~ivv~G~eaGGh~~~~~~~~~ll~~i~~~~~~~~iPviaaGGI~~~~--~v~~al~~GA~gV~~GT~fl~ 200 (332)
++.+.++|+|++|+.+ +. ..-++.+++..+ + .++..+||+ ++ +..+++..|+|-+++|+.+..
T Consensus 121 a~~a~~~G~~GvV~sa-----t~------~~e~~~ir~~~~--~-f~~v~pGI~-~~g~~~~~a~~~Gad~iVvGr~I~~ 185 (215)
T 3ve9_A 121 REVARRVNPKGFVAPA-----TR------PSMISRVKGDFP--D-KLVISPGVG-TQGAKPGIALCHGADYEIVGRSVYQ 185 (215)
T ss_dssp HHHHHHHCCSEEECCT-----TS------HHHHHHHHHHCT--T-SEEEECCTT-STTCCTTHHHHTTCSEEEECHHHHT
T ss_pred HHHHHHcCCCceeeCC-----CC------HHHHHHHHHhCC--C-cEEEcCCCC-cCcCCHHHHHHcCCCEEEeCHHHcC
Confidence 6677889999998722 21 223456666553 5 788899994 56 788899999999999999988
Q ss_pred Ccc
Q 020013 201 SEE 203 (332)
Q Consensus 201 t~E 203 (332)
++.
T Consensus 186 a~d 188 (215)
T 3ve9_A 186 SAD 188 (215)
T ss_dssp SSS
T ss_pred CCC
Confidence 754
|
| >2yw3_A 4-hydroxy-2-oxoglutarate aldolase/2-deydro-3- deoxyphosphogluconate aldolase; structural genomics, NPPSFA; 1.67A {Thermus thermophilus} PDB: 2yw4_A | Back alignment and structure |
|---|
Probab=96.02 E-value=0.14 Score=43.76 Aligned_cols=101 Identities=19% Similarity=0.235 Sum_probs=70.0
Q ss_pred HHHHHHHHhcCCcEEEEccCCC-cHHHHHHHHhCCCEEEE-ecCCHHHHHHHHHcCCCEEEEecCCCCcccCCCCchhhh
Q 020013 77 NENIKAILSEKVAVLQVSWGEY-SEELVLEAHSAGVKVVP-QVGSFDEARKAVNAGVDAIIVQGREAGGHVIGQDGLISL 154 (332)
Q Consensus 77 ~~~~~~~~~~~~~~I~~~~g~~-~~~~i~~~~~~g~~v~~-~v~s~~~a~~a~~~g~D~ivv~G~eaGGh~~~~~~~~~l 154 (332)
.+.++.+.+.|+++|++..-.+ ..+.++.+++..+.+.. .+.+.++++.+.+.|+|+++. + + .+...
T Consensus 28 ~~~~~~l~~gGv~~iel~~k~~~~~~~i~~~~~~~~~~gag~vl~~d~~~~A~~~GAd~v~~-----~-~-----~d~~v 96 (207)
T 2yw3_A 28 LGLARVLEEEGVGALEITLRTEKGLEALKALRKSGLLLGAGTVRSPKEAEAALEAGAAFLVS-----P-G-----LLEEV 96 (207)
T ss_dssp HHHHHHHHHTTCCEEEEECSSTHHHHHHHHHTTSSCEEEEESCCSHHHHHHHHHHTCSEEEE-----S-S-----CCHHH
T ss_pred HHHHHHHHHcCCCEEEEeCCChHHHHHHHHHhCCCCEEEeCeEeeHHHHHHHHHcCCCEEEc-----C-C-----CCHHH
Confidence 4567778888999999975432 23556666663333332 344678999999999999964 1 1 11333
Q ss_pred HHHHHHHhCCCCCcEEeecCcCCHHHHHHHHHcCcceeee
Q 020013 155 LPMVVDLIGDRDIPIIAAGGIVDARGYVAALSLGAQGICL 194 (332)
Q Consensus 155 l~~i~~~~~~~~iPviaaGGI~~~~~v~~al~~GA~gV~~ 194 (332)
+...++ . ++|++. |+.|++++.++..+|||.|.+
T Consensus 97 ~~~~~~-~---g~~~i~--G~~t~~e~~~A~~~Gad~v~~ 130 (207)
T 2yw3_A 97 AALAQA-R---GVPYLP--GVLTPTEVERALALGLSALKF 130 (207)
T ss_dssp HHHHHH-H---TCCEEE--EECSHHHHHHHHHTTCCEEEE
T ss_pred HHHHHH-h---CCCEEe--cCCCHHHHHHHHHCCCCEEEE
Confidence 443333 4 678776 488999999999999999987
|
| >1rvg_A Fructose-1,6-bisphosphate aldolase; class II aldolase, metal-depdendent aldolase, lyase; 2.00A {Thermus aquaticus} SCOP: c.1.10.2 PDB: 1rv8_A 2fjk_A* | Back alignment and structure |
|---|
Probab=95.98 E-value=0.76 Score=41.57 Aligned_cols=131 Identities=18% Similarity=0.168 Sum_probs=77.6
Q ss_pred HHHHHHHHHHhhcCCcEEEEeecCCCCHHHHHHHHhcCCcEEEEccCCCc--------HHHHHHHHhCCCEEEE------
Q 020013 50 YLRDLIRKTRSLTERPFGVGVVLAFPHNENIKAILSEKVAVLQVSWGEYS--------EELVLEAHSAGVKVVP------ 115 (332)
Q Consensus 50 ~~~~~i~~~r~~~~~p~gvnl~~~~~~~~~~~~~~~~~~~~I~~~~g~~~--------~~~i~~~~~~g~~v~~------ 115 (332)
.+...+..+.+ .+.|+.+++=--. ..+.+..+++.|...|-+.....| .++++.++..|+.|=.
T Consensus 60 ~~~~~v~~~a~-~~VPValHlDHg~-~~e~~~~ai~~GFtSVMiDgS~~p~eENi~~Tk~vv~~ah~~gvsVEaELG~vg 137 (305)
T 1rvg_A 60 LTLMAVELAKE-ARVPVAVHLDHGS-SYESVLRALRAGFTSVMIDKSHEDFETNVRETRRVVEAAHAVGVTVEAELGRLA 137 (305)
T ss_dssp HHHHHHHHHHH-CSSCEEEEEEEEC-SHHHHHHHHHTTCSEEEECCTTSCHHHHHHHHHHHHHHHHHTTCEEEEEESCCC
T ss_pred HHHHHHHHHHh-CCCcEEEECCCCC-CHHHHHHHHHcCCCeeeeCCCCCCHHHHHHHHHHHHHHHHHcCCEEEEEEeecc
Confidence 34444444444 5667777653222 256677777888888777533333 2455666766665421
Q ss_pred -------------ecCCHHHHHHHH-HcCCCEEEE-ecCCCCccc--CCCCchhhhHHHHHHHhCCCCCcEEeecCcCCH
Q 020013 116 -------------QVGSFDEARKAV-NAGVDAIIV-QGREAGGHV--IGQDGLISLLPMVVDLIGDRDIPIIAAGGIVDA 178 (332)
Q Consensus 116 -------------~v~s~~~a~~a~-~~g~D~ivv-~G~eaGGh~--~~~~~~~~ll~~i~~~~~~~~iPviaaGGI~~~ 178 (332)
..++++++.... +.|+|.+-+ .|.-=|-.. +.+.-.+.+|.++.+.+ ++|++.-||=+-+
T Consensus 138 g~Ed~~~~~~~~~~yT~Peea~~Fv~~TgvD~LAvaiGt~HG~Yk~~g~p~L~~~~L~~I~~~~---~vpLVlHGgSsv~ 214 (305)
T 1rvg_A 138 GIEEHVAVDEKDALLTNPEEARIFMERTGADYLAVAIGTSHGAYKGKGRPFIDHARLERIARLV---PAPLVLHGASAVP 214 (305)
T ss_dssp CSCC------CCTTCCCHHHHHHHHHHHCCSEEEECSSCCSSSBCSSSSCCCCHHHHHHHHHHC---CSCEEECSCCCCC
T ss_pred CccCCccccccccccCCHHHHHHHHHHHCCCEEEEecCccccccCCCCCCccCHHHHHHHHHhc---CCCEEEeCCCCCc
Confidence 126788888876 479998877 333222221 11234588899999988 7999999855333
Q ss_pred HHHHHHH
Q 020013 179 RGYVAAL 185 (332)
Q Consensus 179 ~~v~~al 185 (332)
.+..+.+
T Consensus 215 ~~~~~~~ 221 (305)
T 1rvg_A 215 PELVERF 221 (305)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 3333333
|
| >3fs2_A 2-dehydro-3-deoxyphosphooctonate aldolase; ssgcid, bruciellla melitensis, DAHP synthetase I, cytoplasm, lipopolysaccharide biosynthesis; HET: PG4; 1.85A {Brucella melitensis} | Back alignment and structure |
|---|
Probab=95.97 E-value=0.36 Score=43.51 Aligned_cols=175 Identities=18% Similarity=0.249 Sum_probs=97.7
Q ss_pred cceecCCCCCCCCcHHHHHHHH----hCC---CceeecCCCC-----CCH--------HHHHHHHHHHHhhcCCcEEEEe
Q 020013 11 YGIVQAPLGPDISGPELVAAVA----NAG---GLGLLRAPDW-----EAP--------DYLRDLIRKTRSLTERPFGVGV 70 (332)
Q Consensus 11 ~Pii~apM~~g~s~~~la~avs----~aG---glG~i~~~~~-----~~~--------e~~~~~i~~~r~~~~~p~gvnl 70 (332)
.-+|.+|-+ +.+++.+..++ ++| +++.+.-.++ .++ ++=.++++++++..+.|+..-+
T Consensus 42 l~vIaGPCs--ies~e~~~~~A~~lk~~~~~~~~~~v~k~~f~KapRTs~~sf~Glg~~~GL~~L~~~~~e~GLpv~Tev 119 (298)
T 3fs2_A 42 LALIAGPCQ--METRDHAFEMAGRLKEMTDKLGIGLVYKSSFDKANRTSLKAARGIGLEKALEVFSDLKKEYGFPVLTDI 119 (298)
T ss_dssp CEEEEECSB--CCCHHHHHHHHHHHHHHHHHHTCCEEEECBCCCCC---------CCHHHHHHHHHHHHHHHCCCEEEEC
T ss_pred eEEEEeCCc--CCCHHHHHHHHHHHHHHHHHcCCcEEEEcccccCCCCCCCCcCCcCHHHHHHHHHHHHHhcCCeEEEEe
Confidence 347778875 66765544443 333 3444432211 122 1222344555545566666554
Q ss_pred ecCCCCHHHHHHHHhcCCcEEEEccC-CCcHHHHHHHHhCCCEEEEecC---CHHHHHHH----HHcCCC-EEEEe-cCC
Q 020013 71 VLAFPHNENIKAILSEKVAVLQVSWG-EYSEELVLEAHSAGVKVVPQVG---SFDEARKA----VNAGVD-AIIVQ-GRE 140 (332)
Q Consensus 71 ~~~~~~~~~~~~~~~~~~~~I~~~~g-~~~~~~i~~~~~~g~~v~~~v~---s~~~a~~a----~~~g~D-~ivv~-G~e 140 (332)
+ +.+.++.+.+. +|+++++.. ....++++.+-+.+.+|+.+-+ +++|...+ .+.|.+ .++++ |..
T Consensus 120 ~----D~~~v~~l~~~-vd~lkIgA~~~~n~~LLr~va~~gkPVilK~Gms~t~~ei~~ave~i~~~Gn~~iiL~erg~~ 194 (298)
T 3fs2_A 120 H----TEEQCAAVAPV-VDVLQIPAFLCRQTDLLIAAARTGRVVNVKKGQFLAPWDMKNVLAKITESGNPNVLATERGVS 194 (298)
T ss_dssp C----SHHHHHHHTTT-CSEEEECGGGTTCHHHHHHHHHTTSEEEEECCTTCCGGGHHHHHHHHHTTTCCCEEEEECCEE
T ss_pred C----CHHHHHHHHhh-CCEEEECccccCCHHHHHHHHccCCcEEEeCCCCCCHHHHHHHHHHHHHcCCCeEEEEECCCC
Confidence 3 36677777777 999999743 2344677777788999987654 55554433 345655 44443 332
Q ss_pred CCcccCCCCchhhhHHHHHHHhCCCCCcEEee---------------cCcCC--HHHHHHHHHcCcceeeecccc
Q 020013 141 AGGHVIGQDGLISLLPMVVDLIGDRDIPIIAA---------------GGIVD--ARGYVAALSLGAQGICLGTRF 198 (332)
Q Consensus 141 aGGh~~~~~~~~~ll~~i~~~~~~~~iPviaa---------------GGI~~--~~~v~~al~~GA~gV~~GT~f 198 (332)
. +.. .....+..++.+++ . ++||+.. +|... ..-..++.++||||+++=+-|
T Consensus 195 y-~~~-~~~vdl~~i~~lk~-~---~~PV~~D~sHsvq~p~~~~~~s~G~r~~v~~~a~AAvAlGAdGl~IE~H~ 263 (298)
T 3fs2_A 195 F-GYN-TLVSDMRALPIMAG-L---GAPVIFDATHSVQQPGGQGGSTGGQREFVETLARAAVAVGVAGFFIETHE 263 (298)
T ss_dssp C-SSS-CEECCTTHHHHHHT-T---TSCEEEEHHHHTCCCC--------CGGGHHHHHHHHHHHCCSEEEEEEES
T ss_pred C-CCC-CCccCHHHHHHHHH-c---CCcEEEcCCCccccCCcccCCCCCchhhHHHHHHHHHHcCCCEEEEEecC
Confidence 2 111 11134677888776 5 7999883 33211 123457889999999985443
|
| >2agk_A 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino) methylideneamino] imidazole-4-carboxamide...; TIM alpha/beta barrel; HET: CIT; 1.30A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=95.95 E-value=0.0065 Score=54.16 Aligned_cols=71 Identities=13% Similarity=-0.016 Sum_probs=54.9
Q ss_pred CCH-HHHHHHHHcCCCEEEEecCCCCcccCCCCchhhhHHHHHHHhCCCCCcEEeecCcCCHHHHHHHHHcCcceeeecc
Q 020013 118 GSF-DEARKAVNAGVDAIIVQGREAGGHVIGQDGLISLLPMVVDLIGDRDIPIIAAGGIVDARGYVAALSLGAQGICLGT 196 (332)
Q Consensus 118 ~s~-~~a~~a~~~g~D~ivv~G~eaGGh~~~~~~~~~ll~~i~~~~~~~~iPviaaGGI~~~~~v~~al~~GA~gV~~GT 196 (332)
.++ +.|+...+.|+|.+.+---.+ .....+.++.+.+ .+|+...|||.+. ++.+++ +||+-|.+||
T Consensus 38 ~dp~~~A~~~~~~Ga~~l~vvDL~~--------~n~~~i~~i~~~~---~~pv~vgGGir~~-~~~~~l-~Ga~~Viigs 104 (260)
T 2agk_A 38 HPSSYYAKLYKDRDVQGCHVIKLGP--------NNDDAAREALQES---PQFLQVGGGINDT-NCLEWL-KWASKVIVTS 104 (260)
T ss_dssp CCHHHHHHHHHHTTCTTCEEEEESS--------SCHHHHHHHHHHS---TTTSEEESSCCTT-THHHHT-TTCSCEEECG
T ss_pred CCHHHHHHHHHHcCCCEEEEEeCCC--------CCHHHHHHHHhcC---CceEEEeCCCCHH-HHHHHh-cCCCEEEECc
Confidence 444 556777888999877632221 2256677887776 7999999999875 999999 9999999999
Q ss_pred ccccC
Q 020013 197 RFVAS 201 (332)
Q Consensus 197 ~fl~t 201 (332)
..+..
T Consensus 105 ~a~~~ 109 (260)
T 2agk_A 105 WLFTK 109 (260)
T ss_dssp GGBCT
T ss_pred HHHhh
Confidence 98865
|
| >3iv3_A Tagatose 1,6-diphosphate aldolase 2; TIM barrel, phosphate binding, tagatose-bisphosphate aldolas tagatose-1,6-bisphosphate aldolase; HET: MSE; 1.80A {Streptococcus mutans} PDB: 3mhf_A 3mhg_A 3jrk_A 3kao_A* 3myp_A 3myo_A | Back alignment and structure |
|---|
Probab=95.93 E-value=0.04 Score=50.63 Aligned_cols=118 Identities=17% Similarity=0.238 Sum_probs=69.2
Q ss_pred HHHHHhcCCcEEEEc--cCCC-cH-----------HHHHHHHhCCCEEEEec----------CC----------HHH-HH
Q 020013 80 IKAILSEKVAVLQVS--WGEY-SE-----------ELVLEAHSAGVKVVPQV----------GS----------FDE-AR 124 (332)
Q Consensus 80 ~~~~~~~~~~~I~~~--~g~~-~~-----------~~i~~~~~~g~~v~~~v----------~s----------~~~-a~ 124 (332)
++.+++.|+|+|.++ ++.+ +. ++.+.+++.|++++..+ .+ +.+ ++
T Consensus 116 ve~a~~~GADAVk~lv~~g~d~~~e~~~~q~~~l~rv~~ec~~~GiPlllEil~y~~~~~~~~~~~~a~~~p~~V~~a~R 195 (332)
T 3iv3_A 116 IKRLKEAGADAVKFLLYYDVDGDPQVNVQKQAYIERIGSECQAEDIPFFLEILTYDETISNNSSVEFAKVKVHKVNDAMK 195 (332)
T ss_dssp HHHHHHTTCSEEEEEEEECTTSCHHHHHHHHHHHHHHHHHHHHHTCCEEEEEEECBTTBSCTTSHHHHTTHHHHHHHHHH
T ss_pred HHHHHHcCCCEEEEEEEcCCCchHHHHHHHHHHHHHHHHHHHHcCCceEEEEeccCCCCCCCcchhhhccCHHHHHHHHH
Confidence 677889999998764 3321 21 12234566799877532 12 212 23
Q ss_pred HH--HHcCCCEEEEecCCC----CcccCCC-----CchhhhHHHHHHHhCCCCCcEE-eecCcCCHHHHH----HHHHcC
Q 020013 125 KA--VNAGVDAIIVQGREA----GGHVIGQ-----DGLISLLPMVVDLIGDRDIPII-AAGGIVDARGYV----AALSLG 188 (332)
Q Consensus 125 ~a--~~~g~D~ivv~G~ea----GGh~~~~-----~~~~~ll~~i~~~~~~~~iPvi-aaGGI~~~~~v~----~al~~G 188 (332)
.+ .+.|+|.+.+.-+.. .|...+. ......+.++.+.. .+|+| .+||. +.+... .++.+|
T Consensus 196 ~~~~~elGaDv~Kve~p~~~~~v~g~~~~~~~y~~~ea~~~f~~~~~a~---~~P~v~lsgG~-~~~~fl~~v~~A~~aG 271 (332)
T 3iv3_A 196 VFSAERFGIDVLKVEVPVNMVYVEGFAEGEVVYSKEEAAQAFREQEAST---DLPYIYLSAGV-SAELFQETLVFAHKAG 271 (332)
T ss_dssp HHTSGGGCCSEEEECCSSCGGGBTTTCSSCCCBCHHHHHHHHHHHHHTC---SSCEEEECTTC-CHHHHHHHHHHHHHHT
T ss_pred HHhhcCcCCcEEEEecCCChhhhcccccccccccHHHHHHHHHHHHhcC---CCCEEEECCCC-CHHHHHHHHHHHHHcC
Confidence 34 366999999963311 0211111 11123355555544 79965 79999 555554 555689
Q ss_pred c--ceeeeccccccC
Q 020013 189 A--QGICLGTRFVAS 201 (332)
Q Consensus 189 A--~gV~~GT~fl~t 201 (332)
| .||.+|......
T Consensus 272 a~f~Gv~~GRnvwq~ 286 (332)
T 3iv3_A 272 AKFNGVLCGRATWAG 286 (332)
T ss_dssp CCCCEEEECHHHHTT
T ss_pred CCcceEEeeHHHHHh
Confidence 9 999999986644
|
| >3n9r_A Fructose-bisphosphate aldolase; FBP aldolase, class II, inhibitor, lyase; HET: TD3; 1.80A {Helicobacter pylori} SCOP: c.1.10.0 PDB: 3c52_A* 3c56_A* 3c4u_A* 3n9s_A* | Back alignment and structure |
|---|
Probab=95.86 E-value=0.63 Score=42.12 Aligned_cols=133 Identities=17% Similarity=0.156 Sum_probs=77.9
Q ss_pred HHHHHHHHHHHhh-cCCcEEEEeecCCCCHHHHHHHHhcCCcEEEEccCCCc--------HHHHHHHHhCCCEEEE----
Q 020013 49 DYLRDLIRKTRSL-TERPFGVGVVLAFPHNENIKAILSEKVAVLQVSWGEYS--------EELVLEAHSAGVKVVP---- 115 (332)
Q Consensus 49 e~~~~~i~~~r~~-~~~p~gvnl~~~~~~~~~~~~~~~~~~~~I~~~~g~~~--------~~~i~~~~~~g~~v~~---- 115 (332)
+.+...+..+.+. .+.|+.+++=--. ..+.+..+++.|...|-+.....| .++++.++..|+.|=.
T Consensus 59 ~~~~~~v~~aa~~~~~VPValHLDHg~-~~e~~~~ai~~GFtSVMiDgS~~p~eeNi~~Tk~vv~~ah~~gvsVEaELG~ 137 (307)
T 3n9r_A 59 DMAVGMVKIMCERYPHIPVALHLDHGT-TFESCEKAVKAGFTSVMIDASHHAFEENLELTSKVVKMAHNAGVSVEAELGR 137 (307)
T ss_dssp HHHHHHHHHHHHHSTTSCEEEEEEEEC-SHHHHHHHHHHTCSEEEECCTTSCHHHHHHHHHHHHHHHHHTTCEEEEEESC
T ss_pred HHHHHHHHHHHHhcCCCcEEEECCCCC-CHHHHHHHHHhCCCcEEEECCCCCHHHHHHHHHHHHHHHHHcCCeEEEEeee
Confidence 3344444444433 4567777653222 246677777888877776533333 2455666777765521
Q ss_pred ---------------ecCCHHHHHHHH-HcCCCEEEE-ecCCCCccc--CCCCchhhhHHHHHHHhCCCCCcEEeecCcC
Q 020013 116 ---------------QVGSFDEARKAV-NAGVDAIIV-QGREAGGHV--IGQDGLISLLPMVVDLIGDRDIPIIAAGGIV 176 (332)
Q Consensus 116 ---------------~v~s~~~a~~a~-~~g~D~ivv-~G~eaGGh~--~~~~~~~~ll~~i~~~~~~~~iPviaaGGI~ 176 (332)
..++++++.... +.|+|.+-+ .|.-=|-.. +.+.-.+.+|.++.+.. ++|++.-||=+
T Consensus 138 igG~Ed~~~~~~~~~~yT~Peea~~Fv~~TgvD~LAvaiGt~HG~Yk~~~~p~Ld~~~L~~I~~~~---~~PLVlHGgS~ 214 (307)
T 3n9r_A 138 LMGIEDNISVDEKDAVLVNPKEAEQFVKESQVDYLAPAIGTSHGAFKFKGEPKLDFERLQEVKRLT---NIPLVLHGASA 214 (307)
T ss_dssp CCCC----------CCSCCHHHHHHHHHHHCCSEEEECSSCCSSSBCCSSSCCCCHHHHHHHHHHH---CSCEEESSCCC
T ss_pred eccccCCcccccccccCCCHHHHHHHHHHHCCCEEEEecCCcccccCCCCCCccCHHHHHHHHhcC---CCCeEEeCCCC
Confidence 135788998865 579999876 343212211 11234588888886655 79999999554
Q ss_pred CHHHHHHHH
Q 020013 177 DARGYVAAL 185 (332)
Q Consensus 177 ~~~~v~~al 185 (332)
-+.+..+.+
T Consensus 215 vp~~~~~~~ 223 (307)
T 3n9r_A 215 IPDNVRKSY 223 (307)
T ss_dssp CCHHHHHHH
T ss_pred cchHHHHHH
Confidence 444444444
|
| >3ru6_A Orotidine 5'-phosphate decarboxylase; structural genomics, center for structural genomics of infec diseases (csgid), TIM-barrel; 1.80A {Campylobacter jejuni subsp} | Back alignment and structure |
|---|
Probab=95.86 E-value=0.18 Score=45.65 Aligned_cols=107 Identities=11% Similarity=0.073 Sum_probs=66.3
Q ss_pred HHHHHHhcCCcEEEEccCCCcHHHHHHH----HhCC--CEEE-Eec-C--CH----------------HHHHHHHHcCCC
Q 020013 79 NIKAILSEKVAVLQVSWGEYSEELVLEA----HSAG--VKVV-PQV-G--SF----------------DEARKAVNAGVD 132 (332)
Q Consensus 79 ~~~~~~~~~~~~I~~~~g~~~~~~i~~~----~~~g--~~v~-~~v-~--s~----------------~~a~~a~~~g~D 132 (332)
.++.+.+.++|.+.+|.-. ..+.++.+ ++.+ .+++ +.+ + +. +-++.+.+.|+|
T Consensus 95 av~~~a~lGaD~vTVHa~~-G~~~m~aa~e~a~~~~~~~~llaVtvLTS~s~~~l~~l~~~~~~e~V~~lA~~a~~~G~d 173 (303)
T 3ru6_A 95 ACEEVSKLGVDMINIHASA-GKIAIQEVMTRLSKFSKRPLVLAVSALTSFDEENFFSIYRQKIEEAVINFSKISYENGLD 173 (303)
T ss_dssp HHHHHHTTTCSEEEEEGGG-CHHHHHHHHHHHTTSSSCCEEEEECSCTTCCHHHHHHHHSSCHHHHHHHHHHHHHHTTCS
T ss_pred HHHHHHhcCCCEEEEeccC-CHHHHHHHHHHHHhcCCCceEEEEEEecCCCHHHHHHHHcCCHHHHHHHHHHHHHHcCCC
Confidence 4556667899999998321 23344433 3333 2444 212 2 11 123345678999
Q ss_pred EEEEecCCCCcccCCCCchhhhHHHHHHHhCCCCCcEEeecCcCCHH-----------HHHHHHHcCcceeeeccccccC
Q 020013 133 AIIVQGREAGGHVIGQDGLISLLPMVVDLIGDRDIPIIAAGGIVDAR-----------GYVAALSLGAQGICLGTRFVAS 201 (332)
Q Consensus 133 ~ivv~G~eaGGh~~~~~~~~~ll~~i~~~~~~~~iPviaaGGI~~~~-----------~v~~al~~GA~gV~~GT~fl~t 201 (332)
+||+...| +..+++..+ +-.++..+||+ +. +..+++.+|||.+++|+.+..+
T Consensus 174 GvV~s~~E--------------~~~IR~~~~--~~fl~VTPGIr-~qG~~~~DQ~Rv~t~~~a~~aGAd~iVvGr~I~~a 236 (303)
T 3ru6_A 174 GMVCSVFE--------------SKKIKEHTS--SNFLTLTPGIR-PFGETNDDQKRVANLAMARENLSDYIVVGRPIYKN 236 (303)
T ss_dssp EEECCTTT--------------HHHHHHHSC--TTSEEEECCCC-TTC--------CCSHHHHHHTTCSEEEECHHHHTS
T ss_pred EEEECHHH--------------HHHHHHhCC--CccEEECCCcC-cccCCcccccccCCHHHHHHcCCCEEEEChHHhCC
Confidence 98872211 345555553 34688899995 33 5778899999999999998876
Q ss_pred cc
Q 020013 202 EE 203 (332)
Q Consensus 202 ~E 203 (332)
+.
T Consensus 237 ~d 238 (303)
T 3ru6_A 237 EN 238 (303)
T ss_dssp SC
T ss_pred CC
Confidence 53
|
| >3tsm_A IGPS, indole-3-glycerol phosphate synthase; structural genomics, ssgcid, seattle structural GE center for infectious disease, lyase; 2.15A {Brucella melitensis} SCOP: c.1.2.0 | Back alignment and structure |
|---|
Probab=95.83 E-value=0.032 Score=49.95 Aligned_cols=72 Identities=18% Similarity=0.128 Sum_probs=56.1
Q ss_pred HHHHHHHHHcCCCEEEEecCCCCcccCCCCchhhhHHHHHHHhCCCCCcEEeecCcCCHHHHHHHHHcCcceeeeccccc
Q 020013 120 FDEARKAVNAGVDAIIVQGREAGGHVIGQDGLISLLPMVVDLIGDRDIPIIAAGGIVDARGYVAALSLGAQGICLGTRFV 199 (332)
Q Consensus 120 ~~~a~~a~~~g~D~ivv~G~eaGGh~~~~~~~~~ll~~i~~~~~~~~iPviaaGGI~~~~~v~~al~~GA~gV~~GT~fl 199 (332)
.+.|+..++.|+++|-+---+ ++- .+....+.++++.+ ++||+.-.+|.++.++.++..+|||+|.++.+.+
T Consensus 82 ~~~A~~y~~~GA~~IsVltd~--~~f---~Gs~~~L~~ir~~v---~lPVl~Kdfi~d~~qi~ea~~~GAD~VlLi~a~L 153 (272)
T 3tsm_A 82 PALAKAYEEGGAACLSVLTDT--PSF---QGAPEFLTAARQAC---SLPALRKDFLFDPYQVYEARSWGADCILIIMASV 153 (272)
T ss_dssp HHHHHHHHHTTCSEEEEECCS--TTT---CCCHHHHHHHHHTS---SSCEEEESCCCSTHHHHHHHHTTCSEEEEETTTS
T ss_pred HHHHHHHHHCCCCEEEEeccc--ccc---CCCHHHHHHHHHhc---CCCEEECCccCCHHHHHHHHHcCCCEEEEccccc
Confidence 456778888999999763210 110 02356778888777 7999999999999999999999999999999877
|
| >4fxs_A Inosine-5'-monophosphate dehydrogenase; structural genomics, IMPDH, IMP, mycophenolic acid, MOA; HET: IMP MOA; 2.24A {Vibrio cholerae o1 biovar el tor} | Back alignment and structure |
|---|
Probab=95.80 E-value=0.17 Score=49.26 Aligned_cols=116 Identities=22% Similarity=0.258 Sum_probs=76.5
Q ss_pred CCCCCCCcHHHHHHHHhCCCceeecC-CCCCCHHHHHHHHHHHHhhc-CCcEEEEeecCCCCHHHHHHHHhcCCcEEEEc
Q 020013 17 PLGPDISGPELVAAVANAGGLGLLRA-PDWEAPDYLRDLIRKTRSLT-ERPFGVGVVLAFPHNENIKAILSEKVAVLQVS 94 (332)
Q Consensus 17 pM~~g~s~~~la~avs~aGglG~i~~-~~~~~~e~~~~~i~~~r~~~-~~p~gvnl~~~~~~~~~~~~~~~~~~~~I~~~ 94 (332)
..+.+..+.+.+.++.++|. -++.. ......+...+.++++++.. +.|+.++-.. ..+..+.+.+.|+|+|.+.
T Consensus 225 avG~~~d~~~~a~~l~~aG~-d~I~id~a~g~~~~~~~~i~~ir~~~p~~~Vi~g~v~---t~e~a~~l~~aGaD~I~Vg 300 (496)
T 4fxs_A 225 AVGAAPGNEERVKALVEAGV-DVLLIDSSHGHSEGVLQRIRETRAAYPHLEIIGGNVA---TAEGARALIEAGVSAVKVG 300 (496)
T ss_dssp ECCSSSCCHHHHHHHHHTTC-SEEEEECSCTTSHHHHHHHHHHHHHCTTCCEEEEEEC---SHHHHHHHHHHTCSEEEEC
T ss_pred eeccccchHHHHHHHHhccC-ceEEeccccccchHHHHHHHHHHHHCCCceEEEcccC---cHHHHHHHHHhCCCEEEEC
Confidence 34333456788888888874 33321 11123355667888888765 6787664222 2567788899999999874
Q ss_pred c--------------CCCcHH----HHHHHHhCCCEEEE--ecCCHHHHHHHHHcCCCEEEE
Q 020013 95 W--------------GEYSEE----LVLEAHSAGVKVVP--QVGSFDEARKAVNAGVDAIIV 136 (332)
Q Consensus 95 ~--------------g~~~~~----~i~~~~~~g~~v~~--~v~s~~~a~~a~~~g~D~ivv 136 (332)
. |.+... +.+.+++.+++|++ .+.+.+++.+++..|+|+|.+
T Consensus 301 ~g~Gs~~~tr~~~g~g~p~~~~i~~v~~~~~~~~iPVIa~GGI~~~~di~kala~GAd~V~i 362 (496)
T 4fxs_A 301 IGPGSICTTRIVTGVGVPQITAIADAAGVANEYGIPVIADGGIRFSGDISKAIAAGASCVMV 362 (496)
T ss_dssp SSCCTTBCHHHHHCCCCCHHHHHHHHHHHHGGGTCCEEEESCCCSHHHHHHHHHTTCSEEEE
T ss_pred CCCCcCcccccccCCCccHHHHHHHHHHHhccCCCeEEEeCCCCCHHHHHHHHHcCCCeEEe
Confidence 1 122122 23333455899997 588999999999999999998
|
| >1twd_A Copper homeostasis protein CUTC; TIM-like protein, structural genomics, PSI, protein structure initiative; 1.70A {Shigella flexneri} SCOP: c.1.30.1 PDB: 1x7i_A 1x8c_A | Back alignment and structure |
|---|
Probab=95.76 E-value=0.53 Score=41.41 Aligned_cols=161 Identities=12% Similarity=0.106 Sum_probs=94.7
Q ss_pred CcHHHHHHHHhCCCceee------cCCCCCCHHHHHHHHHHHHhhcCCcEEEEeecCCC-----C--------HHHHHHH
Q 020013 23 SGPELVAAVANAGGLGLL------RAPDWEAPDYLRDLIRKTRSLTERPFGVGVVLAFP-----H--------NENIKAI 83 (332)
Q Consensus 23 s~~~la~avs~aGglG~i------~~~~~~~~e~~~~~i~~~r~~~~~p~gvnl~~~~~-----~--------~~~~~~~ 83 (332)
.+.+-+.+..++|+ .=| ..++ .+|. ...++.+++..+.| |++++.+- + .+.++.+
T Consensus 9 ~s~~~a~~A~~~GA-dRIELc~~L~~GG-lTPS--~g~i~~~~~~~~ip--v~vMIRPR~GdF~Ys~~E~~~M~~Di~~~ 82 (256)
T 1twd_A 9 YSMECALTAQQNGA-DRVELCAAPKEGG-LTPS--LGVLKSVRQRVTIP--VHPIIRPRGGDFCYSDGEFAAILEDVRTV 82 (256)
T ss_dssp SSHHHHHHHHHTTC-SEEEECBCGGGTC-BCCC--HHHHHHHHHHCCSC--EEEBCCSSSSCSCCCHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHcCC-CEEEEcCCcccCC-CCCC--HHHHHHHHHHcCCc--eEEEECCCCCCCcCCHHHHHHHHHHHHHH
Confidence 45666666656553 222 2222 3443 13345555555555 44455320 1 2345678
Q ss_pred HhcCCcEEEEcc----CCCcHHHHHHHHh--CCCEEEE-----ecCCHHHHH-HHHHcCCCEEEEecCCCCcccCCCCch
Q 020013 84 LSEKVAVLQVSW----GEYSEELVLEAHS--AGVKVVP-----QVGSFDEAR-KAVNAGVDAIIVQGREAGGHVIGQDGL 151 (332)
Q Consensus 84 ~~~~~~~I~~~~----g~~~~~~i~~~~~--~g~~v~~-----~v~s~~~a~-~a~~~g~D~ivv~G~eaGGh~~~~~~~ 151 (332)
.+.|++.|.+++ |....+..+++.+ .+.++.. .+.++.++. .+.+.|+|-|+-.|. .. .....
T Consensus 83 ~~~GadGvV~G~Lt~dg~iD~~~~~~Li~~a~~~~vTFHRAfD~~~d~~~ale~L~~lG~~rILTSG~----~~-~a~~g 157 (256)
T 1twd_A 83 RELGFPGLVTGVLDVDGNVDMPRMEKIMAAAGPLAVTFHRAFDMCANPLYTLNNLAELGIARVLTSGQ----KS-DALQG 157 (256)
T ss_dssp HHTTCSEEEECCBCTTSSBCHHHHHHHHHHHTTSEEEECGGGGGCSCHHHHHHHHHHHTCCEEEECTT----SS-STTTT
T ss_pred HHcCCCEEEEeeECCCCCcCHHHHHHHHHHhCCCcEEEECchhccCCHHHHHHHHHHcCCCEEECCCC----CC-CHHHH
Confidence 889999999864 2223344444432 3666542 234665554 456789999997543 22 22233
Q ss_pred hhhHHHHHHHhCCCCCcEEeecCcCCHHHHHHHHHcCcceeeeccc
Q 020013 152 ISLLPMVVDLIGDRDIPIIAAGGIVDARGYVAALSLGAQGICLGTR 197 (332)
Q Consensus 152 ~~ll~~i~~~~~~~~iPviaaGGI~~~~~v~~al~~GA~gV~~GT~ 197 (332)
+.+|+++.+... ++-|++.||| +.+|+.+.+..|+..+=.+..
T Consensus 158 ~~~L~~Lv~~a~--~i~Im~GgGv-~~~Ni~~l~~tGv~e~H~Sa~ 200 (256)
T 1twd_A 158 LSKIMELIAHRD--APIIMAGAGV-RAENLHHFLDAGVLEVHSSAG 200 (256)
T ss_dssp HHHHHHHHTSSS--CCEEEEESSC-CTTTHHHHHHHTCSEEEECCE
T ss_pred HHHHHHHHHhhC--CcEEEecCCc-CHHHHHHHHHcCCCeEeECCc
Confidence 566666665433 6889999999 899999988889888776543
|
| >2ftp_A Hydroxymethylglutaryl-COA lyase; structural genomics, PSI, protein structure initiativ midwest center for structural genomics, MCSG; 2.40A {Pseudomonas aeruginosa} | Back alignment and structure |
|---|
Probab=95.74 E-value=0.2 Score=45.41 Aligned_cols=131 Identities=14% Similarity=0.032 Sum_probs=81.6
Q ss_pred HHHHHHhhcCCcEEEEeecCCCCHHHHHHHHhcCCcEEEEccCCCc------------------HHHHHHHHhCCCEEEE
Q 020013 54 LIRKTRSLTERPFGVGVVLAFPHNENIKAILSEKVAVLQVSWGEYS------------------EELVLEAHSAGVKVVP 115 (332)
Q Consensus 54 ~i~~~r~~~~~p~gvnl~~~~~~~~~~~~~~~~~~~~I~~~~g~~~------------------~~~i~~~~~~g~~v~~ 115 (332)
.++.+.+..+.++.+.+ +..+.++.+++.|++.|.+..+..+ .+.++.+++.|+.|-.
T Consensus 67 ~~~~~~~~~~~~~~~l~----~~~~~i~~a~~aG~~~v~i~~~~s~~~~~~~~~~s~ee~l~~~~~~v~~a~~~G~~V~~ 142 (302)
T 2ftp_A 67 VFAGIRQRPGVTYAALA----PNLKGFEAALESGVKEVAVFAAASEAFSQRNINCSIKDSLERFVPVLEAARQHQVRVRG 142 (302)
T ss_dssp HHHHSCCCTTSEEEEEC----CSHHHHHHHHHTTCCEEEEEEESCHHHHHHHHSSCHHHHHHHHHHHHHHHHHTTCEEEE
T ss_pred HHHHhhhcCCCEEEEEe----CCHHHHHHHHhCCcCEEEEEEecCHHHHHHHhCCCHHHHHHHHHHHHHHHHHCCCeEEE
Confidence 34444333344454432 3467889999999999887433211 2456677888998842
Q ss_pred e---c--------CCHHHHHH----HHHcCCCEEEEecCCCCcccCCCCchhhhHHHHHHHhCCCCCcEEeec----CcC
Q 020013 116 Q---V--------GSFDEARK----AVNAGVDAIIVQGREAGGHVIGQDGLISLLPMVVDLIGDRDIPIIAAG----GIV 176 (332)
Q Consensus 116 ~---v--------~s~~~a~~----a~~~g~D~ivv~G~eaGGh~~~~~~~~~ll~~i~~~~~~~~iPviaaG----GI~ 176 (332)
. + ++++++.. +.+.|+|.|.+--. -|.. .+.....++..+++.++ ++|+-.-+ |++
T Consensus 143 ~l~~~~~~e~~~~~~~~~~~~~~~~~~~~G~d~i~l~DT--~G~~-~P~~~~~lv~~l~~~~~--~~~l~~H~Hn~~Gla 217 (302)
T 2ftp_A 143 YISCVLGCPYDGDVDPRQVAWVARELQQMGCYEVSLGDT--IGVG-TAGATRRLIEAVASEVP--RERLAGHFHDTYGQA 217 (302)
T ss_dssp EEECTTCBTTTBCCCHHHHHHHHHHHHHTTCSEEEEEES--SSCC-CHHHHHHHHHHHTTTSC--GGGEEEEEBCTTSCH
T ss_pred EEEEEeeCCcCCCCCHHHHHHHHHHHHHcCCCEEEEeCC--CCCc-CHHHHHHHHHHHHHhCC--CCeEEEEeCCCccHH
Confidence 2 1 35665544 45799999988532 1221 23344667777766552 47877654 774
Q ss_pred CHHHHHHHHHcCcceeee
Q 020013 177 DARGYVAALSLGAQGICL 194 (332)
Q Consensus 177 ~~~~v~~al~~GA~gV~~ 194 (332)
-.++.+++.+|++-|..
T Consensus 218 -~An~laAv~aGa~~vd~ 234 (302)
T 2ftp_A 218 -LANIYASLLEGIAVFDS 234 (302)
T ss_dssp -HHHHHHHHHTTCCEEEE
T ss_pred -HHHHHHHHHhCCCEEEe
Confidence 47788999999987654
|
| >1yya_A Triosephosphate isomerase; riken structural genomics/proteom initiative, RSGI, structural genomics; 1.60A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=95.65 E-value=0.056 Score=47.66 Aligned_cols=119 Identities=15% Similarity=0.214 Sum_probs=72.1
Q ss_pred HHHHHHhcCCcEEEEc-------cCCCcHH----HHHHHHhCCCEEEEecCCH-HH--H-----------HHHHH-cCCC
Q 020013 79 NIKAILSEKVAVLQVS-------WGEYSEE----LVLEAHSAGVKVVPQVGSF-DE--A-----------RKAVN-AGVD 132 (332)
Q Consensus 79 ~~~~~~~~~~~~I~~~-------~g~~~~~----~i~~~~~~g~~v~~~v~s~-~~--a-----------~~a~~-~g~D 132 (332)
....+.+.|++++.++ |+. ..+ -++.+.+.|+.++..++.. ++ + ..+++ ..++
T Consensus 78 S~~mL~d~G~~~ViiGHSERR~~f~E-td~~v~~Kv~~Al~~GL~pI~CvGE~leere~g~t~~vv~~Ql~~~l~~~~~~ 156 (250)
T 1yya_A 78 SARMLSDLGCRYAIVGHSERRRYHGE-TDALVAEKAKRLLEEGITPILCVGEPLEVREKGEAVPYTLRQLRGSLEGVEPP 156 (250)
T ss_dssp CHHHHHHTTCSEEEESCHHHHHHSCC-CHHHHHHHHHHHHHTTCEEEEEECCCHHHHHTTCHHHHHHHHHHHHTTTCCCS
T ss_pred CHHHHHHcCCCEEEeCchhhhcccCC-CHHHHHHHHHHHHHCCCEEEEEcCCcHHHHhcCCHHHHHHHHHHHHHhcCCHH
Confidence 4567888999999985 454 333 2344567899988888743 21 1 11121 2334
Q ss_pred -----EEEEecCCCCcccCCCCch-------hhhHHHHHHH-hC---CCCCcEEeecCcCCHHHHHHHHHc-Ccceeeec
Q 020013 133 -----AIIVQGREAGGHVIGQDGL-------ISLLPMVVDL-IG---DRDIPIIAAGGIVDARGYVAALSL-GAQGICLG 195 (332)
Q Consensus 133 -----~ivv~G~eaGGh~~~~~~~-------~~ll~~i~~~-~~---~~~iPviaaGGI~~~~~v~~al~~-GA~gV~~G 195 (332)
+|-.+..-+=|. |...+ ...+++.... +. ..+++|+..|+| +++|+.+.++. +.||+.+|
T Consensus 157 ~~~~vvIAYEPvWAIGT--G~~Atpe~aqevh~~IR~~l~~~~~~~~a~~vrIlYGGSV-~~~N~~~l~~~~diDG~LVG 233 (250)
T 1yya_A 157 GPEALVIAYEPVWAIGT--GKNATPEDAEAMHQAIRKALSERYGEAFASRVRILYGGSV-NPKNFADLLSMPNVDGGLVG 233 (250)
T ss_dssp SGGGCEEEECCGGGSSS--SCCCCHHHHHHHHHHHHHHHHHHHCHHHHTTCEEEEESSC-CTTTHHHHHTSTTCCEEEES
T ss_pred HcCcEEEEECCHHHhCC--CCCCCHHHHHHHHHHHHHHHHHhcCccccCceeEEEcCCC-CHHHHHHHHcCCCCCeeEee
Confidence 343454444443 12122 2233332211 11 026899999999 78999999998 99999999
Q ss_pred cccccC
Q 020013 196 TRFVAS 201 (332)
Q Consensus 196 T~fl~t 201 (332)
++-+..
T Consensus 234 gAsL~a 239 (250)
T 1yya_A 234 GASLEL 239 (250)
T ss_dssp GGGSSH
T ss_pred HHHhCh
Confidence 997654
|
| >3iwp_A Copper homeostasis protein CUTC homolog; conserved sequence motif, metal-binding site, polymorphism, metal binding protein; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=95.65 E-value=0.045 Score=49.07 Aligned_cols=96 Identities=25% Similarity=0.366 Sum_probs=66.0
Q ss_pred CEEEEecCCHHHHHHHHHcCCCEEEEe-cCCCCcccCCCCchhhhHHHHHHHhCCCCCcEEee----cC-cCCH------
Q 020013 111 VKVVPQVGSFDEARKAVNAGVDAIIVQ-GREAGGHVIGQDGLISLLPMVVDLIGDRDIPIIAA----GG-IVDA------ 178 (332)
Q Consensus 111 ~~v~~~v~s~~~a~~a~~~g~D~ivv~-G~eaGGh~~~~~~~~~ll~~i~~~~~~~~iPviaa----GG-I~~~------ 178 (332)
+.+=..+.|++.+..|++.|+|-|=+- +...||.+ ++..++..+++.+ ++||.+- || ....
T Consensus 40 ~~lEvc~~s~~~a~~A~~gGAdRIELc~~l~~GGlT----PS~g~i~~a~~~~---~ipV~vMIRPRgGdF~Ys~~E~~~ 112 (287)
T 3iwp_A 40 FLMEVCVDSVESAVNAERGGADRIELCSGLSEGGTT----PSMGVLQVVKQSV---QIPVFVMIRPRGGDFLYSDREIEV 112 (287)
T ss_dssp SEEEEEESSHHHHHHHHHHTCSEEEECBCGGGTCBC----CCHHHHHHHHTTC---CSCEEEECCSSSSCSCCCHHHHHH
T ss_pred ceEEEEeCCHHHHHHHHHhCCCEEEECCCCCCCCCC----CCHHHHHHHHHhc---CCCeEEEEecCCCCcccCHHHHHH
Confidence 344456789999999999999999773 44456654 4567777777765 6887753 33 3222
Q ss_pred --HHHHHHHHcCcceeeeccccccCccCCCCHHHHHHHhc
Q 020013 179 --RGYVAALSLGAQGICLGTRFVASEESYAHPEYKRKLVE 216 (332)
Q Consensus 179 --~~v~~al~~GA~gV~~GT~fl~t~Es~~~~~~k~~~~~ 216 (332)
+++..+.++|||||++|- .++|...+...-+.+++
T Consensus 113 M~~dI~~~~~~GAdGvVfG~---L~~dg~iD~~~~~~Li~ 149 (287)
T 3iwp_A 113 MKADIRLAKLYGADGLVFGA---LTEDGHIDKELCMSLMA 149 (287)
T ss_dssp HHHHHHHHHHTTCSEEEECC---BCTTSCBCHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCEEEEee---eCCCCCcCHHHHHHHHH
Confidence 588888899999999993 24555566555444444
|
| >1aw2_A Triosephosphate isomerase; psychrophilic, vibrio marinus; 2.65A {Moritella marina} SCOP: c.1.1.1 PDB: 1aw1_A | Back alignment and structure |
|---|
Probab=95.64 E-value=0.035 Score=49.13 Aligned_cols=119 Identities=16% Similarity=0.194 Sum_probs=72.6
Q ss_pred HHHHHHhcCCcEEEEc-------cCCCcHHH----HHHHHhCCCEEEEecCC-HHH-------------HHHHH-HcCCC
Q 020013 79 NIKAILSEKVAVLQVS-------WGEYSEEL----VLEAHSAGVKVVPQVGS-FDE-------------ARKAV-NAGVD 132 (332)
Q Consensus 79 ~~~~~~~~~~~~I~~~-------~g~~~~~~----i~~~~~~g~~v~~~v~s-~~~-------------a~~a~-~~g~D 132 (332)
....+.+.|++++.++ |+. ..+. ++.+.+.|+.++..++. .++ .+.++ ....+
T Consensus 81 S~~mL~d~G~~~ViiGHSERR~~f~E-td~~v~~Kv~~Al~~GL~pI~CvGEtleere~g~t~~vv~~Ql~~~l~~~~~~ 159 (256)
T 1aw2_A 81 SPAMLKEFGATHIIIGHSERREYHAE-SDEFVAKKFAFLKENGLTPVLCIGESDAQNEAGETMAVCARQLDAVINTQGVE 159 (256)
T ss_dssp CHHHHHHHTCCEEEESCHHHHHHSCC-CHHHHHHHHHHHHHHTCEEEEEECCCHHHHHTTCHHHHHHHHHHHHHHHHCGG
T ss_pred CHHHHHHcCCCEEEECchhhccccCC-CHHHHHHHHHHHHHCCCEEEEEcCCcHHHHhcCCHHHHHHHHHHHHHhcCCHH
Confidence 4567788999999985 454 3444 44556679998888873 332 11111 12333
Q ss_pred ----EEE-EecCCCCcccCCCCch-------hhhHHHHHHHhC---CCCCcEEeecCcCCHHHHHHHHHc-Ccceeeecc
Q 020013 133 ----AII-VQGREAGGHVIGQDGL-------ISLLPMVVDLIG---DRDIPIIAAGGIVDARGYVAALSL-GAQGICLGT 196 (332)
Q Consensus 133 ----~iv-v~G~eaGGh~~~~~~~-------~~ll~~i~~~~~---~~~iPviaaGGI~~~~~v~~al~~-GA~gV~~GT 196 (332)
.|| .+..-+-|. |...+ ...+++....+. ..+++|+..|+| +++|+.+.++. +.||+.+|+
T Consensus 160 ~~~~vvIAYEPvWAIGT--G~~Atpe~a~evh~~IR~~l~~~~~~~a~~vrIlYGGSV-~~~N~~~l~~~~diDG~LVGg 236 (256)
T 1aw2_A 160 ALEGAIIAYEPIWAIGT--GKAATAEDAQRIHAQIRAHIAEKSEAVAKNVVIQYGGSV-KPENAAAYFAQPDIDGALVGG 236 (256)
T ss_dssp GGTTCEEEECCTTTTTS--SCCCCHHHHHHHHHHHHHHHHTTCHHHHHHCEEEECSCC-CTTTHHHHTTSTTCCEEEESG
T ss_pred HcCCEEEEECCHHHhCC--CCCCCHHHHHHHHHHHHHHHHhcChhhcccccEEEcCCC-CHHHHHHHHcCCCCCeeeecH
Confidence 344 455555443 22222 223333221110 014899999999 78999999988 999999999
Q ss_pred ccccC
Q 020013 197 RFVAS 201 (332)
Q Consensus 197 ~fl~t 201 (332)
+-+..
T Consensus 237 AsL~a 241 (256)
T 1aw2_A 237 AALDA 241 (256)
T ss_dssp GGGCH
T ss_pred HHhCh
Confidence 97754
|
| >1xg4_A Probable methylisocitrate lyase; 2-methylisocitrate lyase/inhibitor complex, isocitrate lyase superfamily; HET: ICT; 1.60A {Escherichia coli} PDB: 1xg3_A* 1mum_A 1oqf_A 1ujq_A 1o5q_A | Back alignment and structure |
|---|
Probab=95.63 E-value=0.25 Score=44.57 Aligned_cols=181 Identities=16% Similarity=0.164 Sum_probs=110.4
Q ss_pred hhhcCCccceecCCCCCCCCcHHHHHHHHhCCC---------cee--ecCC--CCCCHHHHHHHHHHHHhhcCCcEEEEe
Q 020013 4 RGMLGFEYGIVQAPLGPDISGPELVAAVANAGG---------LGL--LRAP--DWEAPDYLRDLIRKTRSLTERPFGVGV 70 (332)
Q Consensus 4 ~~~l~~~~Pii~apM~~g~s~~~la~avs~aGg---------lG~--i~~~--~~~~~e~~~~~i~~~r~~~~~p~gvnl 70 (332)
.+++.-.-||+ |. +.-++-.+..+.++|. ++. ++.+ ...+.+++...++.+...++.|+-+.+
T Consensus 10 r~l~~~~~~i~---~~-~a~D~~sA~~~~~aG~~ai~vs~~~~a~~~~G~pD~~~vt~~em~~~~~~I~~~~~~PviaD~ 85 (295)
T 1xg4_A 10 RAALTKENPLQ---IV-GTINANHALLAQRAGYQAIYLSGGGVAAGSLGLPDLGISTLDDVLTDIRRITDVCSLPLLVDA 85 (295)
T ss_dssp HHHHHHSSSEE---EE-ECSSHHHHHHHHHTTCSCEEECHHHHHHTTTCCCSSSCSCHHHHHHHHHHHHHHCCSCEEEEC
T ss_pred HHHHhCCCcEE---Ee-cCcCHHHHHHHHHcCCCEEEECchHhhhhhcCCCCCCCCCHHHHHHHHHHHHhhCCCCEEecC
Confidence 34443334554 32 4668888888878762 121 1111 124667777777777777788877765
Q ss_pred ecCCC-C----HHHHHHHHhcCCcEEEEccCC--------------CcHHHHHHHH---h----CCCEEEEecCC-----
Q 020013 71 VLAFP-H----NENIKAILSEKVAVLQVSWGE--------------YSEELVLEAH---S----AGVKVVPQVGS----- 119 (332)
Q Consensus 71 ~~~~~-~----~~~~~~~~~~~~~~I~~~~g~--------------~~~~~i~~~~---~----~g~~v~~~v~s----- 119 (332)
-.-.. . .+.+..+.+.|+..|.+--+. +..+.+++++ + .+..|..-...
T Consensus 86 d~Gyg~~~~~~~~~v~~l~~aGa~gv~iEd~~~~k~cgH~~gk~L~p~~~~~~~I~Aa~~a~~~~~~~i~aRtda~~~~g 165 (295)
T 1xg4_A 86 DIGFGSSAFNVARTVKSMIKAGAAGLHIEDQVGAKRSGHRPNKAIVSKEEMVDRIRAAVDAKTDPDFVIMARTDALAVEG 165 (295)
T ss_dssp TTCSSSSHHHHHHHHHHHHHHTCSEEEEECBCSSCCCTTSSSCCBCCHHHHHHHHHHHHHHCSSTTSEEEEEECCHHHHC
T ss_pred CcccCCCHHHHHHHHHHHHHcCCeEEEECCCCCCcccCCCCCCccCCHHHHHHHHHHHHHhccCCCcEEEEecHHhhhcC
Confidence 22111 1 234556678899999874221 1224444443 2 24666655442
Q ss_pred ----HHHHHHHHHcCCCEEEEecCCCCcccCCCCchhhhHHHHHHHhCCCCCcEEee---cCcCCHHHHHHHHHcCccee
Q 020013 120 ----FDEARKAVNAGVDAIIVQGREAGGHVIGQDGLISLLPMVVDLIGDRDIPIIAA---GGIVDARGYVAALSLGAQGI 192 (332)
Q Consensus 120 ----~~~a~~a~~~g~D~ivv~G~eaGGh~~~~~~~~~ll~~i~~~~~~~~iPviaa---GGI~~~~~v~~al~~GA~gV 192 (332)
++.++...++|+|.|++++. ++...+.++.+.+ ++|+++. ||-...-+..+.-.+|++.|
T Consensus 166 l~~ai~ra~ay~eAGAd~i~~e~~----------~~~~~~~~i~~~~---~iP~~~N~~~~g~~p~~~~~eL~~~G~~~v 232 (295)
T 1xg4_A 166 LDAAIERAQAYVEAGAEMLFPEAI----------TELAMYRQFADAV---QVPILANITEFGATPLFTTDELRSAHVAMA 232 (295)
T ss_dssp HHHHHHHHHHHHHTTCSEEEETTC----------CSHHHHHHHHHHH---CSCBEEECCSSSSSCCCCHHHHHHTTCSEE
T ss_pred HHHHHHHHHHHHHcCCCEEEEeCC----------CCHHHHHHHHHHc---CCCEEEEecccCCCCCCCHHHHHHcCCCEE
Confidence 23455677899999999543 2367788888888 7998653 34333345667778999999
Q ss_pred eeccccccC
Q 020013 193 CLGTRFVAS 201 (332)
Q Consensus 193 ~~GT~fl~t 201 (332)
.+|...+.+
T Consensus 233 ~~~~~~~~a 241 (295)
T 1xg4_A 233 LYPLSAFRA 241 (295)
T ss_dssp EESSHHHHH
T ss_pred EEChHHHHH
Confidence 999886643
|
| >1mxs_A KDPG aldolase; 2-keto-3-deoxy-6-phosphogluconate aldolase, sulfate, beta-BA lyase; 2.20A {Pseudomonas putida} SCOP: c.1.10.1 | Back alignment and structure |
|---|
Probab=95.63 E-value=0.12 Score=44.87 Aligned_cols=100 Identities=15% Similarity=0.130 Sum_probs=68.7
Q ss_pred HHHHHHHhcCCcEEEEccCCC-cHHHHHHHHh-C-CCEEE-EecCCHHHHHHHHHcCCCEEEEecCCCCcccCCCCchhh
Q 020013 78 ENIKAILSEKVAVLQVSWGEY-SEELVLEAHS-A-GVKVV-PQVGSFDEARKAVNAGVDAIIVQGREAGGHVIGQDGLIS 153 (332)
Q Consensus 78 ~~~~~~~~~~~~~I~~~~g~~-~~~~i~~~~~-~-g~~v~-~~v~s~~~a~~a~~~g~D~ivv~G~eaGGh~~~~~~~~~ 153 (332)
+.++.+++.|+++|++..-.+ ..+.++.+++ . .+.+. ..+.+.++++.+.++|+|+|+. | +. +..
T Consensus 42 ~~~~al~~gGv~~iel~~k~~~~~~~i~~l~~~~~~~~igagtvl~~d~~~~A~~aGAd~v~~-----p-~~-----d~~ 110 (225)
T 1mxs_A 42 PLADALAAGGIRTLEVTLRSQHGLKAIQVLREQRPELCVGAGTVLDRSMFAAVEAAGAQFVVT-----P-GI-----TED 110 (225)
T ss_dssp HHHHHHHHTTCCEEEEESSSTHHHHHHHHHHHHCTTSEEEEECCCSHHHHHHHHHHTCSSEEC-----S-SC-----CHH
T ss_pred HHHHHHHHCCCCEEEEecCCccHHHHHHHHHHhCcccEEeeCeEeeHHHHHHHHHCCCCEEEe-----C-CC-----CHH
Confidence 457778889999999975432 2345554443 2 34443 2455779999999999999964 2 21 122
Q ss_pred hHHHHHHHhCCCCCcEEeecCcCCHHHHHHHHHcCcceeee
Q 020013 154 LLPMVVDLIGDRDIPIIAAGGIVDARGYVAALSLGAQGICL 194 (332)
Q Consensus 154 ll~~i~~~~~~~~iPviaaGGI~~~~~v~~al~~GA~gV~~ 194 (332)
.+. .++.. ++|++. |+.|+..+.+++.+|||-|.+
T Consensus 111 v~~-~~~~~---g~~~i~--G~~t~~e~~~A~~~Gad~vk~ 145 (225)
T 1mxs_A 111 ILE-AGVDS---EIPLLP--GISTPSEIMMGYALGYRRFKL 145 (225)
T ss_dssp HHH-HHHHC---SSCEEC--EECSHHHHHHHHTTTCCEEEE
T ss_pred HHH-HHHHh---CCCEEE--eeCCHHHHHHHHHCCCCEEEE
Confidence 332 23333 678876 499999999999999999988
|
| >1m3u_A 3-methyl-2-oxobutanoate hydroxymethyltransferase; beta-alpha-barrel, TIM-barrel, ketopantoate, selenomethionin decamer; HET: KPL; 1.80A {Escherichia coli} SCOP: c.1.12.8 | Back alignment and structure |
|---|
Probab=95.59 E-value=0.4 Score=42.47 Aligned_cols=146 Identities=13% Similarity=0.117 Sum_probs=89.7
Q ss_pred cceecCCCCCCCCcHHHHHHHHhCCCceee-c-------CC----CCCCHHHHHHHHHHHHhhcCCcE-EEEeec-CC-C
Q 020013 11 YGIVQAPLGPDISGPELVAAVANAGGLGLL-R-------AP----DWEAPDYLRDLIRKTRSLTERPF-GVGVVL-AF-P 75 (332)
Q Consensus 11 ~Pii~apM~~g~s~~~la~avs~aGglG~i-~-------~~----~~~~~e~~~~~i~~~r~~~~~p~-gvnl~~-~~-~ 75 (332)
-||+ |. +.-|...|..+.++|.=.++ + .+ ...+.+++....+.++..++.|+ -+.+-. .. .
T Consensus 17 ~~i~---~~-tayD~~sA~l~e~aG~d~ilvGdsl~~~~lG~~dt~~vtldemi~h~~aV~r~~~~~~vvaD~pfgsy~~ 92 (264)
T 1m3u_A 17 KRFA---TI-TAYDYSFAKLFADEGLNVMLVGDSLGMTVQGHDSTLPVTVADIAYHTAAVRRGAPNCLLLADLPFMAYAT 92 (264)
T ss_dssp CCEE---EE-ECCSHHHHHHHHHHTCCEEEECTTHHHHTTCCSSSTTCCHHHHHHHHHHHHHHCTTSEEEEECCTTSSSS
T ss_pred CcEE---EE-eCcCHHHHHHHHHcCCCEEEECHHHHHHHcCCCCCCCcCHHHHHHHHHHHHhhCCCCcEEEECCCCCcCC
Confidence 4665 32 46688888888888731111 1 11 12355666666677766666554 333322 11 1
Q ss_pred CHHHH---HHHHhcCCcEEEEccCCCcHHHHHHHHhCCCEEEEec-----------------CCH-------HHHHHHHH
Q 020013 76 HNENI---KAILSEKVAVLQVSWGEYSEELVLEAHSAGVKVVPQV-----------------GSF-------DEARKAVN 128 (332)
Q Consensus 76 ~~~~~---~~~~~~~~~~I~~~~g~~~~~~i~~~~~~g~~v~~~v-----------------~s~-------~~a~~a~~ 128 (332)
.++.+ ..+.+.|++.|.+-.|..-.+.++.+.+.|++|+..+ .+. ++++..++
T Consensus 93 ~~~a~~~a~rl~kaGa~aVklEgg~e~~~~I~al~~agipV~gHiGLtPq~v~~~ggf~v~grt~~~a~~~i~rA~a~~e 172 (264)
T 1m3u_A 93 PEQAFENAATVMRAGANMVKIEGGEWLVETVQMLTERAVPVCGHLGLTPQSVNIFGGYKVQGRGDEAGDQLLSDALALEA 172 (264)
T ss_dssp HHHHHHHHHHHHHTTCSEEECCCSGGGHHHHHHHHHTTCCEEEEEESCGGGHHHHTSSCCCCCSHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCCEEEECCcHHHHHHHHHHHHCCCCeEeeecCCceeecccCCeEEEeCCHHHHHHHHHHHHHHHH
Confidence 12223 3566689999998645445678888889999987321 122 34455678
Q ss_pred cCCCEEEEecCCCCcccCCCCchhhhHHHHHHHhCCCCCcEEeecC
Q 020013 129 AGVDAIIVQGREAGGHVIGQDGLISLLPMVVDLIGDRDIPIIAAGG 174 (332)
Q Consensus 129 ~g~D~ivv~G~eaGGh~~~~~~~~~ll~~i~~~~~~~~iPviaaGG 174 (332)
+|+|.|++++. + ..+..++.+.+ ++|+|..|.
T Consensus 173 AGA~~ivlE~v----------p-~~~a~~it~~l---~iP~igIGa 204 (264)
T 1m3u_A 173 AGAQLLVLECV----------P-VELAKRITEAL---AIPVIGIGA 204 (264)
T ss_dssp HTCCEEEEESC----------C-HHHHHHHHHHC---SSCEEEESS
T ss_pred CCCcEEEEecC----------C-HHHHHHHHHhC---CCCEEEeCC
Confidence 99999999653 1 24677888887 799997553
|
| >3usb_A Inosine-5'-monophosphate dehydrogenase; structural genomics, center for structural genomics of infec diseases, csgid, TIM barrel, CBS-domain; HET: MSE IMP; 2.38A {Bacillus anthracis} PDB: 3tsd_A* 3tsb_A* | Back alignment and structure |
|---|
Probab=95.59 E-value=0.038 Score=54.02 Aligned_cols=183 Identities=22% Similarity=0.324 Sum_probs=113.2
Q ss_pred cchhhcCCccceecCCCCCCCCcHHHHHHHHhCCCceeecCCCCCCHHHHHHHHHHHHhhcC----CcEEE---------
Q 020013 2 GWRGMLGFEYGIVQAPLGPDISGPELVAAVANAGGLGLLRAPDWEAPDYLRDLIRKTRSLTE----RPFGV--------- 68 (332)
Q Consensus 2 ~~~~~l~~~~Pii~apM~~g~s~~~la~avs~aGglG~i~~~~~~~~e~~~~~i~~~r~~~~----~p~gv--------- 68 (332)
.|++.+++++|++++||. .++..+++.+++++||+|+|.. + .+.+...+.+++++...+ .|+.+
T Consensus 59 ~lt~~i~l~iPivsa~Md-tvTe~~lAia~a~~GgiGvIh~-~-~~~~~q~~~V~~V~~~~~~m~~d~v~l~~~~tv~ea 135 (511)
T 3usb_A 59 VLSESLQLNIPLISAGMD-TVTEADMAIAMARQGGLGIIHK-N-MSIEQQAEQVDKVKRSESGVISDPFFLTPEHQVYDA 135 (511)
T ss_dssp EEETTEEESSSEEECSCT-TTCSHHHHHHHHHHTCEEEECS-S-SCHHHHHHHHHHHHTSSSCSSSSCCCBCTTSBHHHH
T ss_pred EeecccccCCCccccCch-hhcHHHHHHHHHhcCCceeecc-c-CCHHHHHHHHHHhhccccccccCCEEECCCCCHHHH
Confidence 367889999999999998 7999999999999999999986 3 566665566666654311 11110
Q ss_pred ------------------------Eeec-------------------C-C--------CCHHHHHHHHhcCCcEEEEc--
Q 020013 69 ------------------------GVVL-------------------A-F--------PHNENIKAILSEKVAVLQVS-- 94 (332)
Q Consensus 69 ------------------------nl~~-------------------~-~--------~~~~~~~~~~~~~~~~I~~~-- 94 (332)
+++. . . +..+.++.+.+.+...+.+-
T Consensus 136 ~~~m~~~~~s~~pVvd~g~~~~lvGiVt~rDl~~~~~~~~~V~~vM~~~~~vtv~~~~~l~eal~~m~~~~i~~lpVVDe 215 (511)
T 3usb_A 136 EHLMGKYRISGVPVVNNLDERKLVGIITNRDMRFIQDYSIKISDVMTKEQLITAPVGTTLSEAEKILQKYKIEKLPLVDN 215 (511)
T ss_dssp HHHHHHHCCSEEEEESCTTTCBEEEEEEHHHHTTCCCSSSBHHHHCCCCCCCCEETTCCHHHHHHHHHHHTCSEEEEECT
T ss_pred HHHHHHcCCcEEEEEecCCCCEEEEEEEehHhhhhccCCCcHHHhcccCCCEEECCCCCHHHHHHHHHHcCCCEEEEEeC
Confidence 0000 0 0 01223333444444332221
Q ss_pred c----CC-CcHHHHHHHHhC--------CCEEEEecC----CHHHHHHHHHcCCCEEEEecCCCCcccCCCCchhhhHHH
Q 020013 95 W----GE-YSEELVLEAHSA--------GVKVVPQVG----SFDEARKAVNAGVDAIIVQGREAGGHVIGQDGLISLLPM 157 (332)
Q Consensus 95 ~----g~-~~~~~i~~~~~~--------g~~v~~~v~----s~~~a~~a~~~g~D~ivv~G~eaGGh~~~~~~~~~ll~~ 157 (332)
. |. ...++++.+... ...+...+. +.+.+..+.++|+|.|++.... || ....+.++++
T Consensus 216 ~g~l~GiIT~~Dil~~~~~p~a~~D~~~rl~V~aavg~~~d~~era~aLveaGvd~I~Id~a~--g~---~~~v~~~i~~ 290 (511)
T 3usb_A 216 NGVLQGLITIKDIEKVIEFPNSAKDKQGRLLVGAAVGVTADAMTRIDALVKASVDAIVLDTAH--GH---SQGVIDKVKE 290 (511)
T ss_dssp TSBEEEEEEHHHHHHHHHCTTCCBCTTSCBCCEEEECSSTTHHHHHHHHHHTTCSEEEEECSC--TT---SHHHHHHHHH
T ss_pred CCCEeeeccHHHHHHhhhcccchhhhccceeeeeeeeeccchHHHHHHHHhhccceEEecccc--cc---hhhhhhHHHH
Confidence 0 00 012333333220 111222222 3566777889999999997542 23 2345778888
Q ss_pred HHHHhCCCCCcEEeecCcCCHHHHHHHHHcCcceeeec
Q 020013 158 VVDLIGDRDIPIIAAGGIVDARGYVAALSLGAQGICLG 195 (332)
Q Consensus 158 i~~~~~~~~iPviaaGGI~~~~~v~~al~~GA~gV~~G 195 (332)
+++..+ ++||+ +|+|.+.+.+..+..+|||+|.+|
T Consensus 291 i~~~~~--~~~vi-~g~v~t~e~a~~~~~aGad~i~vg 325 (511)
T 3usb_A 291 VRAKYP--SLNII-AGNVATAEATKALIEAGANVVKVG 325 (511)
T ss_dssp HHHHCT--TSEEE-EEEECSHHHHHHHHHHTCSEEEEC
T ss_pred HHHhCC--CceEE-eeeeccHHHHHHHHHhCCCEEEEC
Confidence 888763 57777 578999999999999999999874
|
| >1vs1_A 3-deoxy-7-phosphoheptulonate synthase; (beta/alpha)8 barrel, transferase; HET: PEP; 2.30A {Aeropyrum pernix} | Back alignment and structure |
|---|
Probab=95.57 E-value=0.84 Score=40.72 Aligned_cols=137 Identities=18% Similarity=0.220 Sum_probs=86.5
Q ss_pred HHHHHHHhhcCCcEEEEeecCCCCHHHHHHHHhcCCcEEEEccCC-CcHHHHHHHHhCCCEEEEecC---CHHHHHHHH-
Q 020013 53 DLIRKTRSLTERPFGVGVVLAFPHNENIKAILSEKVAVLQVSWGE-YSEELVLEAHSAGVKVVPQVG---SFDEARKAV- 127 (332)
Q Consensus 53 ~~i~~~r~~~~~p~gvnl~~~~~~~~~~~~~~~~~~~~I~~~~g~-~~~~~i~~~~~~g~~v~~~v~---s~~~a~~a~- 127 (332)
++++++++..+.|+..-++- ...++.+.+. ++++.++... ....+++.+-+.|.+|+.+-+ ++++...+.
T Consensus 92 ~~l~~~~~~~Gl~~~te~~d----~~~~~~l~~~-vd~~kIgs~~~~n~~ll~~~a~~~kPV~lk~G~~~t~~ei~~Ave 166 (276)
T 1vs1_A 92 KLLRRAGDEAGLPVVTEVLD----PRHVETVSRY-ADMLQIGARNMQNFPLLREVGRSGKPVLLKRGFGNTVEELLAAAE 166 (276)
T ss_dssp HHHHHHHHHHTCCEEEECCC----GGGHHHHHHH-CSEEEECGGGTTCHHHHHHHHHHTCCEEEECCTTCCHHHHHHHHH
T ss_pred HHHHHHHHHcCCcEEEecCC----HHHHHHHHHh-CCeEEECcccccCHHHHHHHHccCCeEEEcCCCCCCHHHHHHHHH
Confidence 34455555567777765543 5667777787 9999997443 344677777777899886643 567766544
Q ss_pred ---HcCC-CEEEEe-cCCCC-cccCCCCchhhhHHHHHHHhCCCCCcEEee-c---CcCC--HHHHHHHHHcCcceeeec
Q 020013 128 ---NAGV-DAIIVQ-GREAG-GHVIGQDGLISLLPMVVDLIGDRDIPIIAA-G---GIVD--ARGYVAALSLGAQGICLG 195 (332)
Q Consensus 128 ---~~g~-D~ivv~-G~eaG-Gh~~~~~~~~~ll~~i~~~~~~~~iPviaa-G---GI~~--~~~v~~al~~GA~gV~~G 195 (332)
..|. +.++++ |.... +.. .....+..++.+++.. ++||+.. . |..+ ..-..+++++||+|+++=
T Consensus 167 ~i~~~Gn~~i~L~~Rg~~~yp~y~-~~~vdl~~i~~lk~~~---~lpVi~dssH~~g~~~~~~~~~~aAva~Ga~Gl~IE 242 (276)
T 1vs1_A 167 YILLEGNWQVVLVERGIRTFEPST-RFTLDVAAVAVLKEAT---HLPVIVDPSHPAGRRSLVPALAKAGLAAGADGLIVE 242 (276)
T ss_dssp HHHHTTCCCEEEEECCBCCSCCSS-SSBCBHHHHHHHHHHB---SSCEEECCHHHHCSGGGHHHHHHHHHHTTCSEEEEE
T ss_pred HHHHcCCCeEEEEeCCcCCCCCcC-cchhCHHHHHHHHHHh---CCCEEEeCCCCCCccchHHHHHHHHHHcCCCEEEEE
Confidence 4565 777776 65221 211 1223466677777765 6898652 2 4322 233556788999999998
Q ss_pred ccc
Q 020013 196 TRF 198 (332)
Q Consensus 196 T~f 198 (332)
+-|
T Consensus 243 ~H~ 245 (276)
T 1vs1_A 243 VHP 245 (276)
T ss_dssp BCS
T ss_pred ecC
Confidence 776
|
| >3ffs_A Inosine-5-monophosphate dehydrogenase; beta-alpha barrel, TIM fold, oxidoreductase; 3.19A {Cryptosporidium parvum} | Back alignment and structure |
|---|
Probab=95.56 E-value=0.24 Score=46.70 Aligned_cols=109 Identities=14% Similarity=0.202 Sum_probs=74.0
Q ss_pred CCcHHHHHHHHhCCCceeec--CCCCCCHHHHHHHHHHHHhhcCCcEEE-EeecCCCCHHHHHHHHhcCCcEEEEcc---
Q 020013 22 ISGPELVAAVANAGGLGLLR--APDWEAPDYLRDLIRKTRSLTERPFGV-GVVLAFPHNENIKAILSEKVAVLQVSW--- 95 (332)
Q Consensus 22 ~s~~~la~avs~aGglG~i~--~~~~~~~e~~~~~i~~~r~~~~~p~gv-nl~~~~~~~~~~~~~~~~~~~~I~~~~--- 95 (332)
+.+.+.+.++.++|. .++. .. ...++.+.+.++++++..+.|+.+ |+.. .+..+.+.+.|+|+|.++.
T Consensus 143 ~~~~e~~~~lveaGv-dvIvldta-~G~~~~~~e~I~~ik~~~~i~Vi~g~V~t----~e~A~~a~~aGAD~I~vG~g~G 216 (400)
T 3ffs_A 143 VNEIERAKLLVEAGV-DVIVLDSA-HGHSLNIIRTLKEIKSKMNIDVIVGNVVT----EEATKELIENGADGIKVGIGPG 216 (400)
T ss_dssp CC-CHHHHHHHHHTC-SEEEECCS-CCSBHHHHHHHHHHHTTCCCEEEEEEECS----HHHHHHHHHTTCSEEEECC---
T ss_pred CCHHHHHHHHHHcCC-CEEEEeCC-CCCcccHHHHHHHHHhcCCCeEEEeecCC----HHHHHHHHHcCCCEEEEeCCCC
Confidence 444678888888873 3442 22 234566677888888766677765 4432 5677888999999998842
Q ss_pred -----------CCCcHHHHHHH----HhCCCEEEE--ecCCHHHHHHHHHcCCCEEEE
Q 020013 96 -----------GEYSEELVLEA----HSAGVKVVP--QVGSFDEARKAVNAGVDAIIV 136 (332)
Q Consensus 96 -----------g~~~~~~i~~~----~~~g~~v~~--~v~s~~~a~~a~~~g~D~ivv 136 (332)
|.+....+..+ ++.+++|+. .+.+.+++.+++.+|+|+|.+
T Consensus 217 s~~~tr~~~g~g~p~~~al~~v~~~~~~~~IPVIA~GGI~~~~di~kalalGAd~V~v 274 (400)
T 3ffs_A 217 SICTTRIVAGVGVPQITAIEKCSSVASKFGIPIIADGGIRYSGDIGKALAVGASSVMI 274 (400)
T ss_dssp ------CCSCBCCCHHHHHHHHHHHHTTTTCCEEEESCCCSHHHHHHHHTTTCSEEEE
T ss_pred cCcccccccccchhHHHHHHHHHHHHHhcCCCEEecCCCCCHHHHHHHHHcCCCEEEE
Confidence 11222233333 235899997 588999999999999999988
|
| >1eep_A Inosine 5'-monophosphate dehydrogenase; alpha-beta barrel, TIM barrel, IMPDH, IMP dehydrogenase, LOO purine biosynthesis, oxidoreductase; 2.40A {Borrelia burgdorferi} SCOP: c.1.5.1 | Back alignment and structure |
|---|
Probab=95.54 E-value=0.26 Score=46.49 Aligned_cols=108 Identities=17% Similarity=0.190 Sum_probs=72.1
Q ss_pred cHHHHHHHHhCCCceeec-CCCCCCHHHHHHHHHHHHhhc-CCcEEE-EeecCCCCHHHHHHHHhcCCcEEEEc------
Q 020013 24 GPELVAAVANAGGLGLLR-APDWEAPDYLRDLIRKTRSLT-ERPFGV-GVVLAFPHNENIKAILSEKVAVLQVS------ 94 (332)
Q Consensus 24 ~~~la~avs~aGglG~i~-~~~~~~~e~~~~~i~~~r~~~-~~p~gv-nl~~~~~~~~~~~~~~~~~~~~I~~~------ 94 (332)
..+.+..+.++|.=.+.. .. ..+++.+.+.++.+|+.+ +.|+.+ ++.. .+.++.+.+.|+|+|.++
T Consensus 154 ~~~~a~~~~~~G~d~i~i~~~-~g~~~~~~e~i~~ir~~~~~~pviv~~v~~----~~~a~~a~~~Gad~I~vg~~~G~~ 228 (404)
T 1eep_A 154 TIERVEELVKAHVDILVIDSA-HGHSTRIIELIKKIKTKYPNLDLIAGNIVT----KEAALDLISVGADCLKVGIGPGSI 228 (404)
T ss_dssp HHHHHHHHHHTTCSEEEECCS-CCSSHHHHHHHHHHHHHCTTCEEEEEEECS----HHHHHHHHTTTCSEEEECSSCSTT
T ss_pred HHHHHHHHHHCCCCEEEEeCC-CCChHHHHHHHHHHHHHCCCCeEEEcCCCc----HHHHHHHHhcCCCEEEECCCCCcC
Confidence 456666666666433321 11 234566778888888877 678876 3322 567788889999999882
Q ss_pred --------cCCCcHHHHHHHH----hCCCEEEE--ecCCHHHHHHHHHcCCCEEEE
Q 020013 95 --------WGEYSEELVLEAH----SAGVKVVP--QVGSFDEARKAVNAGVDAIIV 136 (332)
Q Consensus 95 --------~g~~~~~~i~~~~----~~g~~v~~--~v~s~~~a~~a~~~g~D~ivv 136 (332)
.|.+..+.+..++ ..+++|+. .+.+.+++.+++..|+|+|.+
T Consensus 229 ~~~~~~~~~g~p~~~~l~~v~~~~~~~~ipVia~GGI~~~~d~~~ala~GAd~V~i 284 (404)
T 1eep_A 229 CTTRIVAGVGVPQITAICDVYEACNNTNICIIADGGIRFSGDVVKAIAAGADSVMI 284 (404)
T ss_dssp SHHHHHHCCCCCHHHHHHHHHHHHTTSSCEEEEESCCCSHHHHHHHHHHTCSEEEE
T ss_pred cCccccCCCCcchHHHHHHHHHHHhhcCceEEEECCCCCHHHHHHHHHcCCCHHhh
Confidence 1222223333333 25789886 588999999999999999988
|
| >3khj_A Inosine-5-monophosphate dehydrogenase; enzyme-inhibitor complex, oxidoreductase; HET: IMP C64; 2.80A {Cryptosporidium parvum} | Back alignment and structure |
|---|
Probab=95.54 E-value=0.3 Score=45.41 Aligned_cols=110 Identities=14% Similarity=0.180 Sum_probs=74.8
Q ss_pred CCcHHHHHHHHhCCCceeec-CCCCCCHHHHHHHHHHHHhhcCCcEEE-EeecCCCCHHHHHHHHhcCCcEEEEcc----
Q 020013 22 ISGPELVAAVANAGGLGLLR-APDWEAPDYLRDLIRKTRSLTERPFGV-GVVLAFPHNENIKAILSEKVAVLQVSW---- 95 (332)
Q Consensus 22 ~s~~~la~avs~aGglG~i~-~~~~~~~e~~~~~i~~~r~~~~~p~gv-nl~~~~~~~~~~~~~~~~~~~~I~~~~---- 95 (332)
+.+.+.+..+.++|.-.+.. .. ...++.+.+.++++++..+.|+.+ |+. ..+.++.+.+.|+|+|.++.
T Consensus 104 ~~~~e~a~~l~eaGad~I~ld~a-~G~~~~~~~~i~~i~~~~~~~Vivg~v~----t~e~A~~l~~aGaD~I~VG~~~Gs 178 (361)
T 3khj_A 104 VNEIERAKLLVEAGVDVIVLDSA-HGHSLNIIRTLKEIKSKMNIDVIVGNVV----TEEATKELIENGADGIKVGIGPGS 178 (361)
T ss_dssp TTCHHHHHHHHHTTCSEEEECCS-CCSBHHHHHHHHHHHHHCCCEEEEEEEC----SHHHHHHHHHTTCSEEEECSSCCT
T ss_pred CCHHHHHHHHHHcCcCeEEEeCC-CCCcHHHHHHHHHHHHhcCCcEEEccCC----CHHHHHHHHHcCcCEEEEecCCCc
Confidence 34478888888888544431 22 224556677788888766777776 443 25678888999999998741
Q ss_pred ----------CCCcHHHHHHH----HhCCCEEEE--ecCCHHHHHHHHHcCCCEEEE
Q 020013 96 ----------GEYSEELVLEA----HSAGVKVVP--QVGSFDEARKAVNAGVDAIIV 136 (332)
Q Consensus 96 ----------g~~~~~~i~~~----~~~g~~v~~--~v~s~~~a~~a~~~g~D~ivv 136 (332)
|.+....+..+ ++.+++|+. .+.+.+++.+++.+|+|+|.+
T Consensus 179 ~~~tr~~~g~g~p~~~~i~~v~~~~~~~~iPVIA~GGI~~~~di~kala~GAd~V~v 235 (361)
T 3khj_A 179 ICTTRIVAGVGVPQITAIEKCSSVASKFGIPIIADGGIRYSGDIGKALAVGASSVMI 235 (361)
T ss_dssp TCCHHHHTCBCCCHHHHHHHHHHHHHHHTCCEEEESCCCSHHHHHHHHHHTCSEEEE
T ss_pred CCCcccccCCCCCcHHHHHHHHHHHhhcCCeEEEECCCCCHHHHHHHHHcCCCEEEE
Confidence 12222223333 335789887 477999999999999999988
|
| >2a4a_A Deoxyribose-phosphate aldolase; lyase, TIM beta/alpha barrel, DEOC, DERA, structur genomics, structural genomics consortium, SGC; 1.84A {Plasmodium yoelii yoelii} SCOP: c.1.10.1 | Back alignment and structure |
|---|
Probab=95.51 E-value=0.019 Score=51.47 Aligned_cols=109 Identities=15% Similarity=0.174 Sum_probs=63.8
Q ss_pred HHHHHHhcCCcEEEEcc--C-----CCc-----HHHHHHHHhC--CC--EEEEec---CCHH----HHHHHHHcCCCEEE
Q 020013 79 NIKAILSEKVAVLQVSW--G-----EYS-----EELVLEAHSA--GV--KVVPQV---GSFD----EARKAVNAGVDAII 135 (332)
Q Consensus 79 ~~~~~~~~~~~~I~~~~--g-----~~~-----~~~i~~~~~~--g~--~v~~~v---~s~~----~a~~a~~~g~D~iv 135 (332)
..+.+++.|++-|.+.. | ... .+.++.+++. +. ||+... ++.+ ..+.+.++|+|+|.
T Consensus 111 E~~~Av~~GAdEIDmVinig~lksg~~~~~~~v~~eI~~v~~a~~~~~lKVIlEt~~L~d~e~i~~A~~ia~eaGADfVK 190 (281)
T 2a4a_A 111 DTEKALDDGADEIDLVINYKKIIENTDEGLKEATKLTQSVKKLLTNKILKVIIEVGELKTEDLIIKTTLAVLNGNADFIK 190 (281)
T ss_dssp HHHHHHHHTCSEEEEECCHHHHHHSHHHHHHHHHHHHHHHHTTCTTSEEEEECCHHHHCSHHHHHHHHHHHHTTTCSEEE
T ss_pred HHHHHHHcCCCEEEEecchHhhhCCChhHHHHHHHHHHHHHHHhcCCceEEEEecccCCcHHHHHHHHHHHHHhCCCEEE
Confidence 35667788999887642 1 111 1122333432 32 344322 3433 23456789999998
Q ss_pred Ee-cCCCCcccCCCCchhhhHHHHHHHh------CCCCCcEEeecCcCCHHHHHHHHHcCcc
Q 020013 136 VQ-GREAGGHVIGQDGLISLLPMVVDLI------GDRDIPIIAAGGIVDARGYVAALSLGAQ 190 (332)
Q Consensus 136 v~-G~eaGGh~~~~~~~~~ll~~i~~~~------~~~~iPviaaGGI~~~~~v~~al~~GA~ 190 (332)
.. |+..||-+ .....++.++.+.. ...+++|-++|||.|.+++.+++.+||+
T Consensus 191 TSTGf~~~gAT---~edv~lm~~~v~~~~~~~~~tg~~vgVKaaGGIrt~e~al~~i~aga~ 249 (281)
T 2a4a_A 191 TSTGKVQINAT---PSSVEYIIKAIKEYIKNNPEKNNKIGLKVSGGISDLNTASHYILLARR 249 (281)
T ss_dssp CCCSCSSCCCC---HHHHHHHHHHHHHHHHHCGGGTTCCEEEEESSCCSHHHHHHHHHHHHH
T ss_pred eCCCCCCCCCC---HHHHHHHHHHHHHhhcccccCCCCceEEEeCCCCCHHHHHHHHHHhhh
Confidence 73 55434321 23344444444211 0137999999999999999999999876
|
| >1vr6_A Phospho-2-dehydro-3-deoxyheptonate aldolase; TM0343, structural genomics, joint center for STRU genomics, JCSG, protein structure initiative; 1.92A {Thermotoga maritima} SCOP: c.1.10.4 PDB: 1rzm_A* 3pg9_A* 3pg8_A* | Back alignment and structure |
|---|
Probab=95.46 E-value=1.1 Score=41.39 Aligned_cols=137 Identities=18% Similarity=0.224 Sum_probs=83.8
Q ss_pred HHHHHHHhhcCCcEEEEeecCCCCHHHHHHHHhcCCcEEEEccCC-CcHHHHHHHHhCCCEEEEecC---CHHHHHHHH-
Q 020013 53 DLIRKTRSLTERPFGVGVVLAFPHNENIKAILSEKVAVLQVSWGE-YSEELVLEAHSAGVKVVPQVG---SFDEARKAV- 127 (332)
Q Consensus 53 ~~i~~~r~~~~~p~gvnl~~~~~~~~~~~~~~~~~~~~I~~~~g~-~~~~~i~~~~~~g~~v~~~v~---s~~~a~~a~- 127 (332)
+++++.++.++.|+..-++- ...++.+.+. +|++.++... ....+++.+-+.+.+|+.+-+ ++++...+.
T Consensus 160 ~~l~~~~~e~Gl~~~te~~d----~~~~~~l~~~-vd~lkIgAr~~~n~~LL~~va~~~kPVilk~G~~~tl~ei~~Ave 234 (350)
T 1vr6_A 160 EYLREAADKYGMYVVTEALG----EDDLPKVAEY-ADIIQIGARNAQNFRLLSKAGSYNKPVLLKRGFMNTIEEFLLSAE 234 (350)
T ss_dssp HHHHHHHHHHTCEEEEECSS----GGGHHHHHHH-CSEEEECGGGTTCHHHHHHHHTTCSCEEEECCTTCCHHHHHHHHH
T ss_pred HHHHHHHHHcCCcEEEEeCC----HHHHHHHHHh-CCEEEECcccccCHHHHHHHHccCCcEEEcCCCCCCHHHHHHHHH
Confidence 34455555556777665443 5667777777 9999997443 334577777778999886643 667766554
Q ss_pred ---HcCC-CEEEE-ecCCC-CcccCCCCchhhhHHHHHHHhCCCCCcEEe-ec---CcCC--HHHHHHHHHcCcceeeec
Q 020013 128 ---NAGV-DAIIV-QGREA-GGHVIGQDGLISLLPMVVDLIGDRDIPIIA-AG---GIVD--ARGYVAALSLGAQGICLG 195 (332)
Q Consensus 128 ---~~g~-D~ivv-~G~ea-GGh~~~~~~~~~ll~~i~~~~~~~~iPvia-aG---GI~~--~~~v~~al~~GA~gV~~G 195 (332)
..|. +.+++ .|... -+.. .....+..++.+++.. ++||+. .. |-.+ ..-..+++++||+|+++=
T Consensus 235 ~i~~~GN~~viLceRG~~typ~~~-~~~vdl~ai~~lk~~~---~lpVi~dssHs~G~~~~v~~~a~AAvA~GA~Gl~IE 310 (350)
T 1vr6_A 235 YIANSGNTKIILCERGIRTFEKAT-RNTLDISAVPIIRKES---HLPILVDPSHSGGRRDLVIPLSRAAIAVGAHGIIVE 310 (350)
T ss_dssp HHHHTTCCCEEEEECCBCCSCCSS-SSBCCTTHHHHHHHHB---SSCEEECHHHHHCSGGGHHHHHHHHHHHTCSEEEEE
T ss_pred HHHHCCCCeEEEEeCCCCCCCCcC-hhhhhHHHHHHHHHhh---CCCEEEeCCCCCcccchHHHHHHHHHHhCCCEEEEE
Confidence 4565 66665 34311 1110 1223466678887765 689866 22 4221 233456688999999986
Q ss_pred ccc
Q 020013 196 TRF 198 (332)
Q Consensus 196 T~f 198 (332)
+-|
T Consensus 311 ~H~ 313 (350)
T 1vr6_A 311 VHP 313 (350)
T ss_dssp BCS
T ss_pred ecC
Confidence 554
|
| >3b8i_A PA4872 oxaloacetate decarboxylase; alpha/beta barrel, helix swapping, lyase; 1.90A {Pseudomonas aeruginosa} | Back alignment and structure |
|---|
Probab=95.43 E-value=0.73 Score=41.36 Aligned_cols=181 Identities=16% Similarity=0.169 Sum_probs=109.6
Q ss_pred chhhcCCccceecCCCCCCCCcHHHHHHHHhCCC---------cee--ecCC--CCCCHHHHHHHHHHHHhhcCCcEEEE
Q 020013 3 WRGMLGFEYGIVQAPLGPDISGPELVAAVANAGG---------LGL--LRAP--DWEAPDYLRDLIRKTRSLTERPFGVG 69 (332)
Q Consensus 3 ~~~~l~~~~Pii~apM~~g~s~~~la~avs~aGg---------lG~--i~~~--~~~~~e~~~~~i~~~r~~~~~p~gvn 69 (332)
|.+++.-.-||+ |. +.-++-.+..+.++|. ++. ++.+ ...+.+++...++.+...++.|+-+.
T Consensus 13 lr~l~~~~~~i~---~~-~a~D~~sA~i~e~aGf~ai~vs~s~~a~~~lG~pD~~~vt~~em~~~~~~I~r~~~~PviaD 88 (287)
T 3b8i_A 13 FRALLDSSRCYH---TA-SVFDPMSARIAADLGFECGILGGSVASLQVLAAPDFALITLSEFVEQATRIGRVARLPVIAD 88 (287)
T ss_dssp HHHHHHSSCCEE---CE-ECCSHHHHHHHHHTTCSCEEECHHHHHHHHHSCCSSSCSCHHHHHHHHHHHHTTCSSCEEEE
T ss_pred HHHHHhCCCcEE---Ee-cCCCHHHHHHHHHcCCCEEEeCcHHHHHHhcCCCCCCCCCHHHHHHHHHHHHhcCCCCEEEE
Confidence 344454344665 32 5678888888888862 111 1211 13466777777777777777886665
Q ss_pred eecCCCC----HHHHHHHHhcCCcEEEEccCCCc-------------HHHHHHH---HhC----CCEEEEecC-------
Q 020013 70 VVLAFPH----NENIKAILSEKVAVLQVSWGEYS-------------EELVLEA---HSA----GVKVVPQVG------- 118 (332)
Q Consensus 70 l~~~~~~----~~~~~~~~~~~~~~I~~~~g~~~-------------~~~i~~~---~~~----g~~v~~~v~------- 118 (332)
+-.-... .+.+..+.+.|+..|.+--+..| .+.++++ ++. +..|..-..
T Consensus 89 ~d~Gyg~~~~~~~~v~~l~~aGa~gv~iED~~~pKrcgh~~gkl~~~~e~~~~I~aa~~a~~~~~~~i~aRtdaa~~gl~ 168 (287)
T 3b8i_A 89 ADHGYGNALNVMRTVVELERAGIAALTIEDTLLPAQFGRKSTDLICVEEGVGKIRAALEARVDPALTIIARTNAELIDVD 168 (287)
T ss_dssp CTTCSSSHHHHHHHHHHHHHHTCSEEEEECBCCSCCTTTCTTCBCCHHHHHHHHHHHHHHCCSTTSEEEEEEETTTSCHH
T ss_pred CCCCCCCHHHHHHHHHHHHHhCCeEEEEcCCCCccccCCCCCCccCHHHHHHHHHHHHHcCCCCCcEEEEechhhhcCHH
Confidence 4221111 23455667789999988533211 2444444 333 456664332
Q ss_pred -CHHHHHHHHHcCCCEEEEecCCCCcccCCCCchhhhHHHHHHHhCCCCCcEEe-ecCcCCHHHHHHHHHcCcceeeecc
Q 020013 119 -SFDEARKAVNAGVDAIIVQGREAGGHVIGQDGLISLLPMVVDLIGDRDIPIIA-AGGIVDARGYVAALSLGAQGICLGT 196 (332)
Q Consensus 119 -s~~~a~~a~~~g~D~ivv~G~eaGGh~~~~~~~~~ll~~i~~~~~~~~iPvia-aGGI~~~~~v~~al~~GA~gV~~GT 196 (332)
.++.++...++|+|.|++++. ++...+.++.+.+ ++|++. .||-...-++.+.-++|..-|..|.
T Consensus 169 ~ai~Ra~ay~eAGAd~i~~e~~----------~~~~~~~~i~~~~---~~P~ii~~~g~~~~~~~~eL~~lGv~~v~~~~ 235 (287)
T 3b8i_A 169 AVIQRTLAYQEAGADGICLVGV----------RDFAHLEAIAEHL---HIPLMLVTYGNPQLRDDARLARLGVRVVVNGH 235 (287)
T ss_dssp HHHHHHHHHHHTTCSEEEEECC----------CSHHHHHHHHTTC---CSCEEEECTTCGGGCCHHHHHHTTEEEEECCC
T ss_pred HHHHHHHHHHHcCCCEEEecCC----------CCHHHHHHHHHhC---CCCEEEeCCCCCCCCCHHHHHHcCCcEEEECh
Confidence 233455677899999999643 2346677888777 789883 3444333456777789999999987
Q ss_pred cccc
Q 020013 197 RFVA 200 (332)
Q Consensus 197 ~fl~ 200 (332)
..+.
T Consensus 236 ~~~r 239 (287)
T 3b8i_A 236 AAYF 239 (287)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 7653
|
| >4adt_A Pyridoxine biosynthetic enzyme PDX1 homologue, PU; transferase, pyridoxal 5-phosphate biosynthesis; 2.42A {Plasmodium berghei} PDB: 4adu_A* 4ads_A | Back alignment and structure |
|---|
Probab=95.43 E-value=0.051 Score=49.23 Aligned_cols=76 Identities=17% Similarity=0.136 Sum_probs=59.4
Q ss_pred EEEEecCCHHHHHHHHHcCCCEEEEe-c-----CCCCcccCCCCchhhhHHHHHHHhCCCCCcEEeecCcCCHHHHHHHH
Q 020013 112 KVVPQVGSFDEARKAVNAGVDAIIVQ-G-----REAGGHVIGQDGLISLLPMVVDLIGDRDIPIIAAGGIVDARGYVAAL 185 (332)
Q Consensus 112 ~v~~~v~s~~~a~~a~~~g~D~ivv~-G-----~eaGGh~~~~~~~~~ll~~i~~~~~~~~iPviaaGGI~~~~~v~~al 185 (332)
-++..+.+++.|+.+.+.|+|.|.+- . .-.||.. ....+..|.++++.+ ++||++-+++..-+.+..+.
T Consensus 23 gv~~d~~~~e~A~~ye~~GA~~lsvLe~~~~Di~~~~g~~--R~~~~~~i~~i~~~v---~iPvl~k~~i~~ide~qil~ 97 (297)
T 4adt_A 23 GVIMDVKNVEQAKIAEKAGAIGVMILENIPSELRNTDGVA--RSVDPLKIEEIRKCI---SINVLAKVRIGHFVEAQILE 97 (297)
T ss_dssp CEEEEESSHHHHHHHHHHTCSEEEECCCCC-----CCCCC--CCCCHHHHHHHHTTC---CSEEEEEEETTCHHHHHHHH
T ss_pred CcccCCCcHHHHHHHHHcCCCEEEEecCCCCcchhcCCcc--cCCCHHHHHHHHHhc---CCCEEEeccCCcHHHHHHHH
Confidence 36678899999999999999999874 1 1234411 123577888998887 89999999998888888888
Q ss_pred HcCccee
Q 020013 186 SLGAQGI 192 (332)
Q Consensus 186 ~~GA~gV 192 (332)
++|||.|
T Consensus 98 aaGAD~I 104 (297)
T 4adt_A 98 ELKVDML 104 (297)
T ss_dssp HTTCSEE
T ss_pred HcCCCEE
Confidence 9999999
|
| >1twd_A Copper homeostasis protein CUTC; TIM-like protein, structural genomics, PSI, protein structure initiative; 1.70A {Shigella flexneri} SCOP: c.1.30.1 PDB: 1x7i_A 1x8c_A | Back alignment and structure |
|---|
Probab=95.41 E-value=0.06 Score=47.46 Aligned_cols=97 Identities=18% Similarity=0.221 Sum_probs=67.7
Q ss_pred EecCCHHHHHHHHHcCCCEEEE-ecCCCCcccCCCCchhhhHHHHHHHhCCCCCcEEe-----ecCcCCH--------HH
Q 020013 115 PQVGSFDEARKAVNAGVDAIIV-QGREAGGHVIGQDGLISLLPMVVDLIGDRDIPIIA-----AGGIVDA--------RG 180 (332)
Q Consensus 115 ~~v~s~~~a~~a~~~g~D~ivv-~G~eaGGh~~~~~~~~~ll~~i~~~~~~~~iPvia-----aGGI~~~--------~~ 180 (332)
..+.|++.+..|++.|+|-|=+ .+...||.+ +++.++..+++.+ ++||.+ .|+.... +|
T Consensus 6 vc~~s~~~a~~A~~~GAdRIELc~~L~~GGlT----PS~g~i~~~~~~~---~ipv~vMIRPR~GdF~Ys~~E~~~M~~D 78 (256)
T 1twd_A 6 ICCYSMECALTAQQNGADRVELCAAPKEGGLT----PSLGVLKSVRQRV---TIPVHPIIRPRGGDFCYSDGEFAAILED 78 (256)
T ss_dssp EEESSHHHHHHHHHTTCSEEEECBCGGGTCBC----CCHHHHHHHHHHC---CSCEEEBCCSSSSCSCCCHHHHHHHHHH
T ss_pred EEeCCHHHHHHHHHcCCCEEEEcCCcccCCCC----CCHHHHHHHHHHc---CCceEEEECCCCCCCcCCHHHHHHHHHH
Confidence 4578999999999999999976 444556654 5577778887776 788765 4444332 35
Q ss_pred HHHHHHcCcceeeeccccccCccCCCCHHHHHHHhc-CCCce
Q 020013 181 YVAALSLGAQGICLGTRFVASEESYAHPEYKRKLVE-MDKTE 221 (332)
Q Consensus 181 v~~al~~GA~gV~~GT~fl~t~Es~~~~~~k~~~~~-~~~t~ 221 (332)
+..+..+|||||++|-- +++-.+....-+.+++ +++..
T Consensus 79 i~~~~~~GadGvV~G~L---t~dg~iD~~~~~~Li~~a~~~~ 117 (256)
T 1twd_A 79 VRTVRELGFPGLVTGVL---DVDGNVDMPRMEKIMAAAGPLA 117 (256)
T ss_dssp HHHHHHTTCSEEEECCB---CTTSSBCHHHHHHHHHHHTTSE
T ss_pred HHHHHHcCCCEEEEeeE---CCCCCcCHHHHHHHHHHhCCCc
Confidence 66777899999999943 6666677666555554 45443
|
| >4avf_A Inosine-5'-monophosphate dehydrogenase; oxidoreductase; 2.23A {Pseudomonas aeruginosa} | Back alignment and structure |
|---|
Probab=95.41 E-value=0.19 Score=48.78 Aligned_cols=110 Identities=17% Similarity=0.176 Sum_probs=73.9
Q ss_pred CCcHHHHHHHHhCCCceeec--CCCCCCHHHHHHHHHHHHhhc-CCcEEEEeecCCCCHHHHHHHHhcCCcEEEEcc---
Q 020013 22 ISGPELVAAVANAGGLGLLR--APDWEAPDYLRDLIRKTRSLT-ERPFGVGVVLAFPHNENIKAILSEKVAVLQVSW--- 95 (332)
Q Consensus 22 ~s~~~la~avs~aGglG~i~--~~~~~~~e~~~~~i~~~r~~~-~~p~gvnl~~~~~~~~~~~~~~~~~~~~I~~~~--- 95 (332)
..+.+.+.++.++|. .++. .. ...++.+.+.++++++.. +.|+.++-.. ..+..+.+.+.|+|+|.+..
T Consensus 228 ~~~~~~a~~l~~aG~-d~I~id~a-~g~~~~~~~~v~~i~~~~p~~~Vi~g~v~---t~e~a~~l~~aGaD~I~vg~g~G 302 (490)
T 4avf_A 228 ADTGERVAALVAAGV-DVVVVDTA-HGHSKGVIERVRWVKQTFPDVQVIGGNIA---TAEAAKALAEAGADAVKVGIGPG 302 (490)
T ss_dssp TTHHHHHHHHHHTTC-SEEEEECS-CCSBHHHHHHHHHHHHHCTTSEEEEEEEC---SHHHHHHHHHTTCSEEEECSSCS
T ss_pred cchHHHHHHHhhccc-ceEEeccc-CCcchhHHHHHHHHHHHCCCceEEEeeeC---cHHHHHHHHHcCCCEEEECCCCC
Confidence 345788888888863 3332 21 123455677888888765 5677664222 25677888999999998731
Q ss_pred -----------CCCcHHHHH----HHHhCCCEEEE--ecCCHHHHHHHHHcCCCEEEE
Q 020013 96 -----------GEYSEELVL----EAHSAGVKVVP--QVGSFDEARKAVNAGVDAIIV 136 (332)
Q Consensus 96 -----------g~~~~~~i~----~~~~~g~~v~~--~v~s~~~a~~a~~~g~D~ivv 136 (332)
|.+....+. .+++.+++|++ .+.+.+++.+++.+|+|+|.+
T Consensus 303 s~~~t~~~~g~g~p~~~~l~~v~~~~~~~~iPVIa~GGI~~~~di~kal~~GAd~V~v 360 (490)
T 4avf_A 303 SICTTRIVAGVGVPQISAIANVAAALEGTGVPLIADGGIRFSGDLAKAMVAGAYCVMM 360 (490)
T ss_dssp TTCHHHHHTCBCCCHHHHHHHHHHHHTTTTCCEEEESCCCSHHHHHHHHHHTCSEEEE
T ss_pred cCCCccccCCCCccHHHHHHHHHHHhccCCCcEEEeCCCCCHHHHHHHHHcCCCeeee
Confidence 222222223 33345899997 588999999999999999998
|
| >1oy0_A Ketopantoate hydroxymethyltransferase; domain swapping, structural genomics, PSI, protein structure initiative; 2.80A {Mycobacterium tuberculosis} SCOP: c.1.12.8 | Back alignment and structure |
|---|
Probab=95.27 E-value=0.28 Score=43.82 Aligned_cols=145 Identities=16% Similarity=0.172 Sum_probs=89.7
Q ss_pred cceecCCCCCCCCcHHHHHHHHhCCCceeecCC--------C-----CCCHHHHHHHHHHHHhhcCCcEEE-Eeec-CCC
Q 020013 11 YGIVQAPLGPDISGPELVAAVANAGGLGLLRAP--------D-----WEAPDYLRDLIRKTRSLTERPFGV-GVVL-AFP 75 (332)
Q Consensus 11 ~Pii~apM~~g~s~~~la~avs~aGglG~i~~~--------~-----~~~~e~~~~~i~~~r~~~~~p~gv-nl~~-~~~ 75 (332)
-||+ |. +.-|...|..+.++|. ..|..+ + ..+.+++....+.++..++.|+-+ .+-. ...
T Consensus 34 ~~i~---~~-tayDa~sA~l~e~aG~-d~ilvGdSl~~~~lG~~dt~~vTldemi~h~~aV~r~~~~~~vvaD~pfgsy~ 108 (281)
T 1oy0_A 34 HKWA---ML-TAYDYSTARIFDEAGI-PVLLVGDSAANVVYGYDTTVPISIDELIPLVRGVVRGAPHALVVADLPFGSYE 108 (281)
T ss_dssp CCEE---EE-ECCSHHHHHHHHTTTC-CEEEECTTHHHHTTCCSSSSSCCGGGTHHHHHHHHHHCTTSEEEEECCTTSST
T ss_pred CcEE---EE-eCcCHHHHHHHHHcCC-CEEEECHHHHHHHcCCCCCCCCCHHHHHHHHHHHHhcCCCCeEEEECCCCccc
Confidence 4665 32 4668888888888863 222111 1 235666666677776666666554 3222 111
Q ss_pred -C-HH----HHHHHHhcCCcEEEEccCCCcHHHHHHHHhCCCEEEEecC-----------------C------HHHHHHH
Q 020013 76 -H-NE----NIKAILSEKVAVLQVSWGEYSEELVLEAHSAGVKVVPQVG-----------------S------FDEARKA 126 (332)
Q Consensus 76 -~-~~----~~~~~~~~~~~~I~~~~g~~~~~~i~~~~~~g~~v~~~v~-----------------s------~~~a~~a 126 (332)
. ++ ..+.+.+.|++.|.+-.|..-.+.++.+.+.|++|+..++ + .++++..
T Consensus 109 ~s~~~a~~na~rl~~eaGa~aVklEdg~e~~~~I~al~~agIpV~gHiGLtPqsv~~~ggf~v~grt~~a~~~i~rA~a~ 188 (281)
T 1oy0_A 109 AGPTAALAAATRFLKDGGAHAVKLEGGERVAEQIACLTAAGIPVMAHIGFTPQSVNTLGGFRVQGRGDAAEQTIADAIAV 188 (281)
T ss_dssp TCHHHHHHHHHHHHHTTCCSEEEEEBSGGGHHHHHHHHHHTCCEEEEEECCC--------------CHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHhCCeEEEECCcHHHHHHHHHHHHCCCCEEeeecCCcceecccCCeEEEeCcHHHHHHHHHHHHH
Confidence 1 22 2445556899999986454456788888889998872210 1 1244456
Q ss_pred HHcCCCEEEEecCCCCcccCCCCchhhhHHHHHHHhCCCCCcEEeecC
Q 020013 127 VNAGVDAIIVQGREAGGHVIGQDGLISLLPMVVDLIGDRDIPIIAAGG 174 (332)
Q Consensus 127 ~~~g~D~ivv~G~eaGGh~~~~~~~~~ll~~i~~~~~~~~iPviaaGG 174 (332)
+++|+|.|++++. + ..+..++.+.+ ++|+|..|.
T Consensus 189 ~eAGA~~ivlE~v----------p-~~~a~~it~~l---~iP~igIGa 222 (281)
T 1oy0_A 189 AEAGAFAVVMEMV----------P-AELATQITGKL---TIPTVGIGA 222 (281)
T ss_dssp HHHTCSEEEEESC----------C-HHHHHHHHHHC---SSCEEEESS
T ss_pred HHcCCcEEEEecC----------C-HHHHHHHHHhC---CCCEEEeCC
Confidence 7899999999753 1 24677888887 799997553
|
| >1tre_A Triosephosphate isomerase; intramolecular oxidoreductase; 2.60A {Escherichia coli} SCOP: c.1.1.1 PDB: 1tmh_A | Back alignment and structure |
|---|
Probab=95.25 E-value=0.074 Score=47.00 Aligned_cols=119 Identities=16% Similarity=0.207 Sum_probs=71.9
Q ss_pred HHHHHHhcCCcEEEEc-------cCCCcHHH----HHHHHhCCCEEEEecCC-HHH-------------HHHHH-HcCCC
Q 020013 79 NIKAILSEKVAVLQVS-------WGEYSEEL----VLEAHSAGVKVVPQVGS-FDE-------------ARKAV-NAGVD 132 (332)
Q Consensus 79 ~~~~~~~~~~~~I~~~-------~g~~~~~~----i~~~~~~g~~v~~~v~s-~~~-------------a~~a~-~~g~D 132 (332)
....+.+.|++++.++ |+. ..+. ++...+.|+.++..++. .++ .+.++ ....+
T Consensus 79 S~~mL~d~G~~~ViiGHSERR~~f~E-td~~v~~Kv~~Al~~GL~pI~CvGEtleere~g~t~~vv~~Ql~~~l~~~~~~ 157 (255)
T 1tre_A 79 SAAMLKDIGAQYIIIGHSERRTYHKE-SDELIAKKFAVLKEQGLTPVLCIGETEAENEAGKTEEVCARQIDAVLKTQGAA 157 (255)
T ss_dssp CHHHHHHHTCCEEEESCHHHHHHSCC-CHHHHHHHHHHHHHTTCEEEEEECCCHHHHHTTCHHHHHHHHHHHHHHHHCGG
T ss_pred CHHHHHHcCCCEEEECccccccccCC-CHHHHHHHHHHHHHCCCEEEEEcCCcHHHHhcCCHHHHHHHHHHHHHhcCCHH
Confidence 4567788999999985 454 3444 44566789998888873 332 11111 12333
Q ss_pred ----EEEE-ecCCCCcccCCCCch-------hhhHHHHHHHhC---CCCCcEEeecCcCCHHHHHHHHH-cCcceeeecc
Q 020013 133 ----AIIV-QGREAGGHVIGQDGL-------ISLLPMVVDLIG---DRDIPIIAAGGIVDARGYVAALS-LGAQGICLGT 196 (332)
Q Consensus 133 ----~ivv-~G~eaGGh~~~~~~~-------~~ll~~i~~~~~---~~~iPviaaGGI~~~~~v~~al~-~GA~gV~~GT 196 (332)
.||+ +..-+=|. |...+ ...+++....+. ..+++|+..|+| +++|+.+.++ .+.||+.+|+
T Consensus 158 ~~~~vvIAYEPvWAIGT--G~~Atpe~a~evh~~IR~~l~~~~~~~a~~vrIlYGGSV-~~~N~~~l~~~~diDG~LVGg 234 (255)
T 1tre_A 158 AFEGAVIAYEPVWAIGT--GKSATPAQAQAVHKFIRDHIAKVDANIAEQVIIQYGGSV-NASNAAELFAQPDIDGALVGG 234 (255)
T ss_dssp GGTTCEEEECCGGGSSS--SCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCEEEECSCC-CTTTHHHHHTSTTCCEEEESG
T ss_pred HcCcEEEEECCHHHhCC--CCCCCHHHHHHHHHHHHHHHHhcChhhcCcccEEEcCCC-CHHHHHHHHcCCCCCeeEecH
Confidence 3443 44444443 11121 223333211110 015899999999 7889999998 7999999999
Q ss_pred ccccC
Q 020013 197 RFVAS 201 (332)
Q Consensus 197 ~fl~t 201 (332)
+-+..
T Consensus 235 AsL~a 239 (255)
T 1tre_A 235 ASLKA 239 (255)
T ss_dssp GGGCH
T ss_pred HHhCh
Confidence 97754
|
| >4dbe_A Orotidine 5'-phosphate decarboxylase; TIM barrel, orotidine 5'-monophosphate decarboxylase, inhibi lyase-lyase inhibitor complex; HET: BMP; 1.79A {Sulfolobus solfataricus} | Back alignment and structure |
|---|
Probab=95.20 E-value=0.26 Score=42.65 Aligned_cols=100 Identities=13% Similarity=0.089 Sum_probs=65.5
Q ss_pred cEEEEcc--C-CC-cHHHHHHHHhCCCEEE--EecCC--------HHHHHHHHHcCCCEEEEecCCCCcccCCCCchhhh
Q 020013 89 AVLQVSW--G-EY-SEELVLEAHSAGVKVV--PQVGS--------FDEARKAVNAGVDAIIVQGREAGGHVIGQDGLISL 154 (332)
Q Consensus 89 ~~I~~~~--g-~~-~~~~i~~~~~~g~~v~--~~v~s--------~~~a~~a~~~g~D~ivv~G~eaGGh~~~~~~~~~l 154 (332)
|++.+|. | .. -...++.+++.+..|+ ...++ .+-++.+.++|+|++++.+ +. ..-
T Consensus 80 d~vTVh~~~G~~~~~~~a~~~~~~~~~~v~vLts~s~~~~~~~~~~~~a~~a~~~g~~GvV~sa-----t~------p~e 148 (222)
T 4dbe_A 80 NSFIAHSFIGVKGSLDELKRYLDANSKNLYLVAVMSHEGWSTLFADYIKNVIREISPKGIVVGG-----TK------LDH 148 (222)
T ss_dssp SEEEEESTTCTTTTHHHHHHHHHHTTCEEEEEEECSSTTCCCTTHHHHHHHHHHHCCSEEEECT-----TC------HHH
T ss_pred CEEEEEcCcCcHHHHHHHHHHHHhcCCcEEEEEeCCCcchHHHHHHHHHHHHHHhCCCEEEECC-----CC------HHH
Confidence 8988873 3 21 2234444554444443 33333 4566778889999999832 11 123
Q ss_pred HHHHHHHhCCCCCcEEeecCcCCHH--HHHHHHHcCcceeeeccccccCcc
Q 020013 155 LPMVVDLIGDRDIPIIAAGGIVDAR--GYVAALSLGAQGICLGTRFVASEE 203 (332)
Q Consensus 155 l~~i~~~~~~~~iPviaaGGI~~~~--~v~~al~~GA~gV~~GT~fl~t~E 203 (332)
++.+++..+ + .++..+||+ ++ +..+++..|+|.+++|..+..++.
T Consensus 149 ~~~ir~~~~--~-~~~vtPGI~-~~g~tp~~a~~~Gad~iVVGR~I~~A~d 195 (222)
T 4dbe_A 149 ITQYRRDFE--K-MTIVSPGMG-SQGGSYGDAVCAGADYEIIGRSIYNAGN 195 (222)
T ss_dssp HHHHHHHCT--T-CEEEECCBS-TTSBCTTHHHHHTCSEEEECHHHHTSSS
T ss_pred HHHHHHhCC--C-CEEEcCCcc-cCccCHHHHHHcCCCEEEECHHhcCCCC
Confidence 455666553 4 688899995 44 577889999999999999998754
|
| >2yc6_A Triosephosphate isomerase; glycolysis; HET: PGA; 1.45A {Giardia intestinalis} PDB: 2dp3_A 2yc7_A* 3pf3_A 2yc8_A | Back alignment and structure |
|---|
Probab=95.19 E-value=0.15 Score=45.10 Aligned_cols=119 Identities=18% Similarity=0.170 Sum_probs=72.0
Q ss_pred HHHHHHhcCCcEEEEc-------cCCCcHHH----HHHHHhCCCEEEEecC-CHHH-------------HHHHH-Hc-CC
Q 020013 79 NIKAILSEKVAVLQVS-------WGEYSEEL----VLEAHSAGVKVVPQVG-SFDE-------------ARKAV-NA-GV 131 (332)
Q Consensus 79 ~~~~~~~~~~~~I~~~-------~g~~~~~~----i~~~~~~g~~v~~~v~-s~~~-------------a~~a~-~~-g~ 131 (332)
....+.+.|++++.++ |+. ..++ ++.+.+.|+.++..++ +.++ .+.++ .. .+
T Consensus 80 S~~mL~d~G~~~ViiGHSERR~~f~E-td~~v~~Kv~~Al~~GL~pI~CvGEtleere~g~t~~vv~~Ql~~~l~~~~~~ 158 (257)
T 2yc6_A 80 SVEMLQDMGLKHVIVGHSERRRIMGE-TDEQSAKKAKRALEKGMTVIFCVGETLDERKANRTMEVNIAQLEALGKELGES 158 (257)
T ss_dssp CHHHHHHTTCCEEEESCHHHHHTSCC-CHHHHHHHHHHHHHTTCEEEEEECCCHHHHHTTCHHHHHHHHHHHHHHHHTTC
T ss_pred CHHHHHHcCCCEEEECchhhccccCC-CHHHHHHHHHHHHHCCCEEEEEcCCcHHHHhcCCHHHHHHHHHHHHHhcCCCh
Confidence 4567888999999985 454 3332 3445678999888887 3332 11112 12 33
Q ss_pred C-----EEEE-ecCCCCcccCCCCch-------hhhHHHHHHH-hC---CCCCcEEeecCcCCHHHHHHHHHc-Ccceee
Q 020013 132 D-----AIIV-QGREAGGHVIGQDGL-------ISLLPMVVDL-IG---DRDIPIIAAGGIVDARGYVAALSL-GAQGIC 193 (332)
Q Consensus 132 D-----~ivv-~G~eaGGh~~~~~~~-------~~ll~~i~~~-~~---~~~iPviaaGGI~~~~~v~~al~~-GA~gV~ 193 (332)
+ .|++ +..-+=|. |...+ ...+++.... +. ..+++|+..|+| +++|+.+.++. +.||+.
T Consensus 159 ~~~~~~vvIAYEPvWAIGT--G~~Atpe~aqevh~~IR~~l~~~~~~~~a~~vrIlYGGSV-~~~N~~~l~~~~diDG~L 235 (257)
T 2yc6_A 159 KMLWKEVVIAYEPVWSIGT--GVVATPEQAEEVHVGLRKWFVEKVAAEGAQHIRIIYGGSA-NGSNNEKLGQCPNIDGFL 235 (257)
T ss_dssp HHHHHTEEEEECCGGGTTT--SCCCCHHHHHHHHHHHHHHHHHHHHHHHHTTCEEEEESSC-CTTTHHHHHTSTTCCEEE
T ss_pred hhccCCEEEEECCHHHhCC--CCCCCHHHHHHHHHHHHHHHHHhcChhhcccceEEEcCcc-CHHHHHHHHcCCCCCeee
Confidence 3 3444 44444443 12122 2233332111 10 026899999999 78899999987 999999
Q ss_pred eccccccC
Q 020013 194 LGTRFVAS 201 (332)
Q Consensus 194 ~GT~fl~t 201 (332)
+|++-+..
T Consensus 236 VGgAsL~a 243 (257)
T 2yc6_A 236 VGGASLKP 243 (257)
T ss_dssp ESGGGGST
T ss_pred ecHHHHHH
Confidence 99997754
|
| >1p1x_A Deoxyribose-phosphate aldolase; alpha-beta barrel, TIM barrel, lyase; 0.99A {Escherichia coli} SCOP: c.1.10.1 PDB: 1jcl_A 1jcj_A* 1ktn_A 3npv_B 3npu_A 3npw_A 3nq2_A 3npx_A 3nq8_A 3q2d_A* 3nr0_A 3nqv_A | Back alignment and structure |
|---|
Probab=95.10 E-value=0.033 Score=49.51 Aligned_cols=109 Identities=20% Similarity=0.285 Sum_probs=63.4
Q ss_pred HHHHHHhcCCcEEEEcc-------CCCc--HHHHHH----HHhCCC--EEEEec---CCHH----HHHHHHHcCCCEEEE
Q 020013 79 NIKAILSEKVAVLQVSW-------GEYS--EELVLE----AHSAGV--KVVPQV---GSFD----EARKAVNAGVDAIIV 136 (332)
Q Consensus 79 ~~~~~~~~~~~~I~~~~-------g~~~--~~~i~~----~~~~g~--~v~~~v---~s~~----~a~~a~~~g~D~ivv 136 (332)
..+.+++.|++-|.+.. |... .+.++. +++.+. ||+... ++.+ ..+.+.++|+|+|..
T Consensus 90 E~~~Av~~GAdEIDmVinig~l~~g~~~~v~~ei~~v~~a~~~~g~~lKvIlEt~~L~d~e~i~~a~~ia~eaGADfVKT 169 (260)
T 1p1x_A 90 ETRAAIAYGADEVDVVFPYRALMAGNEQVGFDLVKACKEACAAANVLLKVIIETGELKDEALIRKASEISIKAGADFIKT 169 (260)
T ss_dssp HHHHHHHHTCSEEEEECCHHHHHTTCCHHHHHHHHHHHHHHHHTTCEEEEECCHHHHCSHHHHHHHHHHHHHTTCSEEEC
T ss_pred HHHHHHHcCCCEEEEeccHHhhhCCCHHHHHHHHHHHHHHhcccCCeEEEEEecccCCcHHHHHHHHHHHHHhCCCEEEe
Confidence 35667888999887642 2211 112222 233344 345332 3433 234467899999987
Q ss_pred e-cCCCCcccCCCCchhhhHHHHHHHhC-CCCCcEEeecCcCCHHHHHHHHHcCcc
Q 020013 137 Q-GREAGGHVIGQDGLISLLPMVVDLIG-DRDIPIIAAGGIVDARGYVAALSLGAQ 190 (332)
Q Consensus 137 ~-G~eaGGh~~~~~~~~~ll~~i~~~~~-~~~iPviaaGGI~~~~~v~~al~~GA~ 190 (332)
. |+..||- ......++.++.+... ..+++|-++|||.+.+++.+++.+|++
T Consensus 170 STGf~~~gA---t~e~v~lm~~~I~~~~~g~~v~VKaaGGIrt~~~al~~i~aga~ 222 (260)
T 1p1x_A 170 STGKVAVNA---TPESARIMMEVIRDMGVEKTVGFKPAGGVRTAEDAQKYLAIADE 222 (260)
T ss_dssp CCSCSSCCC---CHHHHHHHHHHHHHHTCTTTCEEECBSSCCSHHHHHHHHHHHHH
T ss_pred CCCCCCCCC---CHHHHHHHHHHHHHhcCCCCceEEEeCCCCCHHHHHHHHHhhhh
Confidence 3 5543332 1222334444433211 237999999999999999999999876
|
| >3f4w_A Putative hexulose 6 phosphate synthase; humps, malonate, lyase; 1.65A {Salmonella typhimurium} SCOP: c.1.2.0 | Back alignment and structure |
|---|
Probab=94.88 E-value=0.32 Score=41.20 Aligned_cols=122 Identities=11% Similarity=0.108 Sum_probs=78.1
Q ss_pred ccceecCCCCCCCCcHHH-HHHHHhCCCceeecCCCCCCHHHHHHHHHHHHhhcCCcEEEEeecCCCCHHHHHHHHhcCC
Q 020013 10 EYGIVQAPLGPDISGPEL-VAAVANAGGLGLLRAPDWEAPDYLRDLIRKTRSLTERPFGVGVVLAFPHNENIKAILSEKV 88 (332)
Q Consensus 10 ~~Pii~apM~~g~s~~~l-a~avs~aGglG~i~~~~~~~~e~~~~~i~~~r~~~~~p~gvnl~~~~~~~~~~~~~~~~~~ 88 (332)
+.||....|. ...++. +....++|.=+++... ....+.+.+.++.+++. +.++.+.+.......+.++.+.+.++
T Consensus 53 ~~~i~~~~~~--~~~~~~~~~~~~~~Gad~v~v~~-~~~~~~~~~~~~~~~~~-g~~~~v~~~~~~t~~~~~~~~~~~g~ 128 (211)
T 3f4w_A 53 HKEVLADAKI--MDGGHFESQLLFDAGADYVTVLG-VTDVLTIQSCIRAAKEA-GKQVVVDMICVDDLPARVRLLEEAGA 128 (211)
T ss_dssp TSEEEEEEEE--CSCHHHHHHHHHHTTCSEEEEET-TSCHHHHHHHHHHHHHH-TCEEEEECTTCSSHHHHHHHHHHHTC
T ss_pred CCEEEEEEEe--ccchHHHHHHHHhcCCCEEEEeC-CCChhHHHHHHHHHHHc-CCeEEEEecCCCCHHHHHHHHHHcCC
Confidence 5688777775 234444 7778888876665432 22345667777777765 34444433222222356778888999
Q ss_pred cEEEEccC-------CCcHHHHHHHHhC--CCEEEEe--cCCHHHHHHHHHcCCCEEEE
Q 020013 89 AVLQVSWG-------EYSEELVLEAHSA--GVKVVPQ--VGSFDEARKAVNAGVDAIIV 136 (332)
Q Consensus 89 ~~I~~~~g-------~~~~~~i~~~~~~--g~~v~~~--v~s~~~a~~a~~~g~D~ivv 136 (332)
++|.++-| ....+.++++++. +++++.. + +.+.+..+.+.|+|++++
T Consensus 129 d~i~v~~g~~g~~~~~~~~~~i~~l~~~~~~~~i~~~gGI-~~~~~~~~~~~Gad~vvv 186 (211)
T 3f4w_A 129 DMLAVHTGTDQQAAGRKPIDDLITMLKVRRKARIAVAGGI-SSQTVKDYALLGPDVVIV 186 (211)
T ss_dssp CEEEEECCHHHHHTTCCSHHHHHHHHHHCSSCEEEEESSC-CTTTHHHHHTTCCSEEEE
T ss_pred CEEEEcCCCcccccCCCCHHHHHHHHHHcCCCcEEEECCC-CHHHHHHHHHcCCCEEEE
Confidence 99987533 1134667777763 6776543 4 478888899999999998
|
| >3q58_A N-acetylmannosamine-6-phosphate 2-epimerase; TIM beta/alpha barrel, ribulose-phosphate binding barrel, carbohydrate metabolic process; HET: BTB; 1.80A {Salmonella enterica subsp} | Back alignment and structure |
|---|
Probab=94.88 E-value=0.45 Score=41.25 Aligned_cols=108 Identities=19% Similarity=0.123 Sum_probs=73.5
Q ss_pred cHHHHHHHHhCCCceee-cCCCCCCHHHHHHHHHHHHhhcCCcEEEEeecCCCCHHHHHHHHhcCCcEEEEc-cC-----
Q 020013 24 GPELVAAVANAGGLGLL-RAPDWEAPDYLRDLIRKTRSLTERPFGVGVVLAFPHNENIKAILSEKVAVLQVS-WG----- 96 (332)
Q Consensus 24 ~~~la~avs~aGglG~i-~~~~~~~~e~~~~~i~~~r~~~~~p~gvnl~~~~~~~~~~~~~~~~~~~~I~~~-~g----- 96 (332)
+.+.+..+.++|.=.++ ......+|+.+.+.++.+++. +.++.+++. ..+..+.+.+.|+|+|.+. .|
T Consensus 90 ~~~~i~~~~~aGad~I~l~~~~~~~p~~l~~~i~~~~~~-g~~v~~~v~----t~eea~~a~~~Gad~Ig~~~~g~t~~~ 164 (229)
T 3q58_A 90 YLQDVDALAQAGADIIAFDASFRSRPVDIDSLLTRIRLH-GLLAMADCS----TVNEGISCHQKGIEFIGTTLSGYTGPI 164 (229)
T ss_dssp SHHHHHHHHHHTCSEEEEECCSSCCSSCHHHHHHHHHHT-TCEEEEECS----SHHHHHHHHHTTCSEEECTTTTSSSSC
T ss_pred cHHHHHHHHHcCCCEEEECccccCChHHHHHHHHHHHHC-CCEEEEecC----CHHHHHHHHhCCCCEEEecCccCCCCC
Confidence 34456666677753322 221223567778888888874 455665543 2566778889999999642 11
Q ss_pred ---CCcHHHHHHHHhCCCEEEEe--cCCHHHHHHHHHcCCCEEEE
Q 020013 97 ---EYSEELVLEAHSAGVKVVPQ--VGSFDEARKAVNAGVDAIIV 136 (332)
Q Consensus 97 ---~~~~~~i~~~~~~g~~v~~~--v~s~~~a~~a~~~g~D~ivv 136 (332)
.+..++++.+++.+++++.. +.+++++.++.+.|+|+|++
T Consensus 165 ~~~~~~~~li~~l~~~~ipvIA~GGI~t~~d~~~~~~~GadgV~V 209 (229)
T 3q58_A 165 TPVEPDLAMVTQLSHAGCRVIAEGRYNTPALAANAIEHGAWAVTV 209 (229)
T ss_dssp CCSSCCHHHHHHHHTTTCCEEEESSCCSHHHHHHHHHTTCSEEEE
T ss_pred cCCCCCHHHHHHHHHcCCCEEEECCCCCHHHHHHHHHcCCCEEEE
Confidence 13346777777668888865 77999999999999999999
|
| >1yxy_A Putative N-acetylmannosamine-6-phosphate 2-epimer; structural genomics, epimerase, PSI, structure initiative; 1.60A {Streptococcus pyogenes} SCOP: c.1.2.5 | Back alignment and structure |
|---|
Probab=94.88 E-value=0.52 Score=40.60 Aligned_cols=105 Identities=11% Similarity=0.095 Sum_probs=70.0
Q ss_pred HHHHHHHhcCCcEEEEccCCCcHHHHHHHHhC-CCEEEEe-----------c-CCHHHHHHHHHcCCCEEEEecCCCCcc
Q 020013 78 ENIKAILSEKVAVLQVSWGEYSEELVLEAHSA-GVKVVPQ-----------V-GSFDEARKAVNAGVDAIIVQGREAGGH 144 (332)
Q Consensus 78 ~~~~~~~~~~~~~I~~~~g~~~~~~i~~~~~~-g~~v~~~-----------v-~s~~~a~~a~~~g~D~ivv~G~eaGGh 144 (332)
+.++.+.+.|++.+++. ..+.++.+++. +++++.. + .+.+++..+.+.|+|.|.+.... -.+
T Consensus 40 ~~a~~~~~~G~~~i~~~----~~~~i~~i~~~~~~p~i~~~~~~~~~~~~~i~~~~~~i~~~~~~Gad~V~l~~~~-~~~ 114 (234)
T 1yxy_A 40 LMAKAAQEAGAVGIRAN----SVRDIKEIQAITDLPIIGIIKKDYPPQEPFITATMTEVDQLAALNIAVIAMDCTK-RDR 114 (234)
T ss_dssp HHHHHHHHHTCSEEEEE----SHHHHHHHHTTCCSCEEEECBCCCTTSCCCBSCSHHHHHHHHTTTCSEEEEECCS-SCC
T ss_pred HHHHHHHHCCCcEeecC----CHHHHHHHHHhCCCCEEeeEcCCCCccccccCChHHHHHHHHHcCCCEEEEcccc-cCC
Confidence 45666777899998875 23567777653 5666421 1 25678889999999999885421 111
Q ss_pred cCCCCchhhhHHHHHHHhCCCCCcEEeecCcCCHHHHHHHHHcCccee
Q 020013 145 VIGQDGLISLLPMVVDLIGDRDIPIIAAGGIVDARGYVAALSLGAQGI 192 (332)
Q Consensus 145 ~~~~~~~~~ll~~i~~~~~~~~iPviaaGGI~~~~~v~~al~~GA~gV 192 (332)
. .......++..+++..+ +.+++. ++.+.+++..+..+|+|.|
T Consensus 115 ~-~~~~~~~~i~~i~~~~~--~~~v~~--~~~t~~ea~~a~~~Gad~i 157 (234)
T 1yxy_A 115 H-DGLDIASFIRQVKEKYP--NQLLMA--DISTFDEGLVAHQAGIDFV 157 (234)
T ss_dssp T-TCCCHHHHHHHHHHHCT--TCEEEE--ECSSHHHHHHHHHTTCSEE
T ss_pred C-CCccHHHHHHHHHHhCC--CCeEEE--eCCCHHHHHHHHHcCCCEE
Confidence 1 00133567777777652 455544 7889999999999999998
|
| >2qiw_A PEP phosphonomutase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: P6G; 1.80A {Corynebacterium glutamicum atcc 13032} | Back alignment and structure |
|---|
Probab=94.88 E-value=0.76 Score=40.51 Aligned_cols=178 Identities=16% Similarity=0.126 Sum_probs=105.1
Q ss_pred chhhcCCccceecCCCCCCCCcHHHHHHHHhCCC---------cee-ecCC--CCCCHHHHHHHHHHHHhhcCCcEEEEe
Q 020013 3 WRGMLGFEYGIVQAPLGPDISGPELVAAVANAGG---------LGL-LRAP--DWEAPDYLRDLIRKTRSLTERPFGVGV 70 (332)
Q Consensus 3 ~~~~l~~~~Pii~apM~~g~s~~~la~avs~aGg---------lG~-i~~~--~~~~~e~~~~~i~~~r~~~~~p~gvnl 70 (332)
|.+++.-.-||+ |. +.-+.-.+..+.++|. ++. ++.+ ...+.+++....+.+...++.|+-+.+
T Consensus 12 lr~l~~~~~~i~---~~-~ayD~~sA~~~~~aG~dai~vg~~s~a~~~G~pD~~~vt~~em~~~~~~I~r~~~~pviaD~ 87 (255)
T 2qiw_A 12 FASDHESGKLLV---LP-TVWDTWSAGLVEEAGFSGLTIGSHPVADATGSSDGENMNFADYMAVVKKITSAVSIPVSVDV 87 (255)
T ss_dssp HHHHHHTCCCEE---CC-EESSHHHHHHHHHTTCSCEEECHHHHHHHTTCCTTTCSCHHHHHHHHHHHHHHCSSCEEEEC
T ss_pred HHHHHhCCCcEE---Ee-cCcCHHHHHHHHHcCCCEEEEChHHHHHhCCCCCCCCcCHHHHHHHHHHHHhcCCCCEEecc
Confidence 344454345666 32 5678888888888862 111 1111 124667777777777766677776654
Q ss_pred ecCCCC--HHHHHHHHhcCCcEEEEccCC--------CcHHHH---HHHHhC----CCE--EEEecCC-----------H
Q 020013 71 VLAFPH--NENIKAILSEKVAVLQVSWGE--------YSEELV---LEAHSA----GVK--VVPQVGS-----------F 120 (332)
Q Consensus 71 ~~~~~~--~~~~~~~~~~~~~~I~~~~g~--------~~~~~i---~~~~~~----g~~--v~~~v~s-----------~ 120 (332)
-.-... .+.+..+.+.|+..|.+--+. +..+.+ +.+++. |++ |+..... .
T Consensus 88 ~~Gyg~~~~~~~~~l~~aGa~gv~iEd~~~~~~k~l~~~~e~~~~I~a~~~a~~~~g~~~~v~aRtd~~~~g~~~~~~~~ 167 (255)
T 2qiw_A 88 ESGYGLSPADLIAQILEAGAVGINVEDVVHSEGKRVREAQEHADYIAAARQAADVAGVDVVINGRTDAVKLGADVFEDPM 167 (255)
T ss_dssp TTCTTCCHHHHHHHHHHTTCCEEEECSEEGGGTTEECCHHHHHHHHHHHHHHHHHHTCCCEEEEEECHHHHCTTTSSSHH
T ss_pred CCCcCcHHHHHHHHHHHcCCcEEEECCCCCCCCCcccCHHHHHHHHHHHHHHHHhcCCCeEEEEEechhhccCCcchHHH
Confidence 322111 455667778999999874221 112344 444444 776 5543332 2
Q ss_pred H----HHHHHHHcCCCEEEEecCCCCcccCCCCchhhhHHHHHHHhCCCCCcEEeec--CcCCH-HHHHHHHHcCcceee
Q 020013 121 D----EARKAVNAGVDAIIVQGREAGGHVIGQDGLISLLPMVVDLIGDRDIPIIAAG--GIVDA-RGYVAALSLGAQGIC 193 (332)
Q Consensus 121 ~----~a~~a~~~g~D~ivv~G~eaGGh~~~~~~~~~ll~~i~~~~~~~~iPviaaG--GI~~~-~~v~~al~~GA~gV~ 193 (332)
+ .++..+++|+|.|++++. ++..++.++.+.+ ++|+.... |-.++ -++.++-++|..-|.
T Consensus 168 ~~ai~ra~a~~eAGAd~i~~e~~----------~~~~~~~~i~~~~---~~P~n~~~~~~~~~p~~~~~eL~~lGv~~v~ 234 (255)
T 2qiw_A 168 VEAIKRIKLMEQAGARSVYPVGL----------STAEQVERLVDAV---SVPVNITAHPVDGHGAGDLATLAGLGVRRVT 234 (255)
T ss_dssp HHHHHHHHHHHHHTCSEEEECCC----------CSHHHHHHHHTTC---SSCBEEECBTTTBBTTBCHHHHHHTTCCEEE
T ss_pred HHHHHHHHHHHHcCCcEEEEcCC----------CCHHHHHHHHHhC---CCCEEEEecCCCCCCCCCHHHHHHcCCCEEE
Confidence 2 344567899999999543 2346677887777 67766542 21011 345677789999999
Q ss_pred eccc
Q 020013 194 LGTR 197 (332)
Q Consensus 194 ~GT~ 197 (332)
.|..
T Consensus 235 ~~~~ 238 (255)
T 2qiw_A 235 FGPL 238 (255)
T ss_dssp CTTH
T ss_pred EHHH
Confidence 9877
|
| >2i9e_A Triosephosphate isomerase; 2.00A {Tenebrio molitor} | Back alignment and structure |
|---|
Probab=94.84 E-value=0.26 Score=43.60 Aligned_cols=127 Identities=20% Similarity=0.185 Sum_probs=74.8
Q ss_pred HHHHHHhcCCcEEEEc-------cCCCcHHH----HHHHHhCCCEEEEecCCHHH--------------HHHHHH---cC
Q 020013 79 NIKAILSEKVAVLQVS-------WGEYSEEL----VLEAHSAGVKVVPQVGSFDE--------------ARKAVN---AG 130 (332)
Q Consensus 79 ~~~~~~~~~~~~I~~~-------~g~~~~~~----i~~~~~~g~~v~~~v~s~~~--------------a~~a~~---~g 130 (332)
....+.+.|++++.++ |+. ..++ ++.+.+.|+.++..++...+ .+..++ .-
T Consensus 78 S~~mL~d~G~~~ViiGHSERR~~f~E-td~~v~~Kv~~Al~~GL~pIvCvGEtleere~g~t~~vv~~Ql~~~l~~~~~~ 156 (259)
T 2i9e_A 78 SPAMIKDVGADWVILGHSERRQIFGE-SDELIAEKVCHALESGLKVIACIGETLEEREAGKTEEVVFRQTKAIAAKVNDW 156 (259)
T ss_dssp CHHHHHHTTCCEEEESCHHHHHTSCC-CHHHHHHHHHHHHHTTCEEEEEECCCHHHHHTTCHHHHHHHHHHHHHHHCSCC
T ss_pred CHHHHHHcCCCEEEECchhhhhhcCC-CHHHHHHHHHHHHHCCCeEEEEcCCcHHHHhcCCHHHHHHHHHHHHHhcchhh
Confidence 4567888999999985 454 2333 23455689998888874322 222221 11
Q ss_pred CCEEEE-ecCCCCcccCCCCchh-------hhHHHHHHH-hC---CCCCcEEeecCcCCHHHHHHHHH-cCcceeeeccc
Q 020013 131 VDAIIV-QGREAGGHVIGQDGLI-------SLLPMVVDL-IG---DRDIPIIAAGGIVDARGYVAALS-LGAQGICLGTR 197 (332)
Q Consensus 131 ~D~ivv-~G~eaGGh~~~~~~~~-------~ll~~i~~~-~~---~~~iPviaaGGI~~~~~v~~al~-~GA~gV~~GT~ 197 (332)
...|++ +..-+=|. |...+. ..+++.... +. ..+++|+..|+| +++|+.+.+. .+.||+.+|++
T Consensus 157 ~~~vIAYEPvWAIGT--G~~Atpe~aqevh~~IR~~l~~~~~~~va~~vrIlYGGSV-~~~N~~~l~~~~diDG~LVGgA 233 (259)
T 2i9e_A 157 SNVVIAYEPVWAIGT--GKTATPQQAQDVHKALRQWICENIDAKVGNSIRIQYGGSV-TAANCKELASQPDIDGFLVGGA 233 (259)
T ss_dssp TTEEEEECCGGGTTS--SSCCCHHHHHHHHHHHHHHHHHHTCHHHHHHCEEEECSCC-CTTTHHHHHTSTTCCEEEESGG
T ss_pred cCEEEEEcCHHHcCC--CCCCCHHHHHHHHHHHHHHHHHhcChhhcccccEEEcCCC-CHhhHHHHhcCCCCCeeeechH
Confidence 234444 44444443 222222 223321111 10 014899999999 8899988886 68999999999
Q ss_pred cccCccCCCCHHHHHHHh
Q 020013 198 FVASEESYAHPEYKRKLV 215 (332)
Q Consensus 198 fl~t~Es~~~~~~k~~~~ 215 (332)
-+.. +.|.+.+.
T Consensus 234 sL~a------~~F~~Ii~ 245 (259)
T 2i9e_A 234 SLKP------EFVDIINA 245 (259)
T ss_dssp GGST------HHHHHHTT
T ss_pred hhCh------HHHHHHHH
Confidence 7754 45665543
|
| >3fok_A Uncharacterized protein CGL0159; CGL0159 ,brevibacterium flavum., structural genomics, PSI-2, protein structure initiative; 2.50A {Corynebacterium glutamicum} | Back alignment and structure |
|---|
Probab=94.82 E-value=0.43 Score=43.03 Aligned_cols=106 Identities=19% Similarity=0.286 Sum_probs=71.2
Q ss_pred HHHHHHhcCCcEEE----EccCCCcH--------HHHHHHHhCCCEEEEe--c-----------CCHHH----HHHHHHc
Q 020013 79 NIKAILSEKVAVLQ----VSWGEYSE--------ELVLEAHSAGVKVVPQ--V-----------GSFDE----ARKAVNA 129 (332)
Q Consensus 79 ~~~~~~~~~~~~I~----~~~g~~~~--------~~i~~~~~~g~~v~~~--v-----------~s~~~----a~~a~~~ 129 (332)
.++.++..|+|.+. +..|.+.+ ++++.+++.|++++.. + .+++. ++.+.+.
T Consensus 133 sVe~AvrlGADaV~~l~~i~~Gs~~e~~~l~~la~vv~ea~~~GlP~~~ep~~y~r~gg~v~~~~dp~~Va~aaRiAaEL 212 (307)
T 3fok_A 133 NVSSMVDRGVDFAKTLVRINLSDAGTAPTLEATAHAVNEAAAAQLPIMLEPFMSNWVNGKVVNDLSTDAVIQSVAIAAGL 212 (307)
T ss_dssp CHHHHHHHTCCEEEEEEEECTTCTTHHHHHHHHHHHHHHHHHTTCCEEEEEEEEEEETTEEEECCSHHHHHHHHHHHHTC
T ss_pred CHHHHHHCCCCEEEEEEEECCCChhHHHHHHHHHHHHHHHHHcCCcEEEEeeccccCCCCcCCCCCHHHHHHHHHHHHHh
Confidence 46778888999976 33454322 3445567789887653 1 24443 3456788
Q ss_pred CCC----EEEEecCCCCcccCCCCchhhhHHHHHHHhCCCCCcEEeecCcCC--HHH----HHHHHH-cCcceeeecccc
Q 020013 130 GVD----AIIVQGREAGGHVIGQDGLISLLPMVVDLIGDRDIPIIAAGGIVD--ARG----YVAALS-LGAQGICLGTRF 198 (332)
Q Consensus 130 g~D----~ivv~G~eaGGh~~~~~~~~~ll~~i~~~~~~~~iPviaaGGI~~--~~~----v~~al~-~GA~gV~~GT~f 198 (332)
|+| +|.+.=+ .-+.++.+.. .+||+.+||=.. .++ +.+++. .||.|+.+|.-+
T Consensus 213 GADs~~tivK~~y~-------------e~f~~Vv~a~---~vPVViaGG~k~~~~~e~L~~v~~A~~~aGa~Gv~vGRNI 276 (307)
T 3fok_A 213 GNDSSYTWMKLPVV-------------EEMERVMEST---TMPTLLLGGEGGNDPDATFASWEHALTLPGVRGLTVGRTL 276 (307)
T ss_dssp SSCCSSEEEEEECC-------------TTHHHHGGGC---SSCEEEECCSCC--CHHHHHHHHHHTTSTTEEEEEECTTT
T ss_pred CCCcCCCEEEeCCc-------------HHHHHHHHhC---CCCEEEeCCCCCCCHHHHHHHHHHHHHhCCCeEEeechhh
Confidence 999 8887322 1246666665 699999998763 334 456777 699999999888
Q ss_pred cc
Q 020013 199 VA 200 (332)
Q Consensus 199 l~ 200 (332)
+.
T Consensus 277 fQ 278 (307)
T 3fok_A 277 LY 278 (307)
T ss_dssp SS
T ss_pred cc
Confidence 77
|
| >2bdq_A Copper homeostasis protein CUTC; alpha beta protein, structural genomics, PSI, protein structure initiative; 2.30A {Streptococcus agalactiae} | Back alignment and structure |
|---|
Probab=94.77 E-value=1.2 Score=38.43 Aligned_cols=117 Identities=19% Similarity=0.285 Sum_probs=71.9
Q ss_pred HHHHHHhcCCcEEEEcc----CCCcHHHHHHHHh--CCCEEE-E----ec--CCHHHHH-HHHHcCCCEEEEecCCCCcc
Q 020013 79 NIKAILSEKVAVLQVSW----GEYSEELVLEAHS--AGVKVV-P----QV--GSFDEAR-KAVNAGVDAIIVQGREAGGH 144 (332)
Q Consensus 79 ~~~~~~~~~~~~I~~~~----g~~~~~~i~~~~~--~g~~v~-~----~v--~s~~~a~-~a~~~g~D~ivv~G~eaGGh 144 (332)
.++.+.+.|++.|.+++ |....+..+++.+ .+.++. + .+ .++.++. .+.+.|+|-|+-.|. .
T Consensus 81 Di~~~~~~GadGvV~G~Lt~dg~iD~~~~~~Li~~a~~~~vTFHRAFD~~~~~d~~~ale~L~~lGv~rILTSG~----~ 156 (224)
T 2bdq_A 81 DILRAVELESDALVLGILTSNNHIDTEAIEQLLPATQGLPLVFHMAFDVIPKSDQKKSIDQLVALGFTRILLHGS----S 156 (224)
T ss_dssp HHHHHHHTTCSEEEECCBCTTSSBCHHHHHHHHHHHTTCCEEECGGGGGSCTTTHHHHHHHHHHTTCCEEEECSC----S
T ss_pred HHHHHHHcCCCEEEEeeECCCCCcCHHHHHHHHHHhCCCeEEEECchhccCCcCHHHHHHHHHHcCCCEEECCCC----C
Confidence 45677889999998864 2223344444432 356654 2 23 4555554 466889999997543 2
Q ss_pred cCC--CCchhhhHHHHHHHhCCCCCcEEeecCcCCHHHHHHHH-HcCcceeeeccccccCcc
Q 020013 145 VIG--QDGLISLLPMVVDLIGDRDIPIIAAGGIVDARGYVAAL-SLGAQGICLGTRFVASEE 203 (332)
Q Consensus 145 ~~~--~~~~~~ll~~i~~~~~~~~iPviaaGGI~~~~~v~~al-~~GA~gV~~GT~fl~t~E 203 (332)
. . ....+..|+++.+.... ++-|++.||| +.+|+.+.+ ..|++.+= +|.+..-.-
T Consensus 157 ~-~~~a~~g~~~L~~Lv~~a~~-ri~Im~GgGV-~~~Ni~~l~~~tGv~e~H-~s~i~~~~~ 214 (224)
T 2bdq_A 157 N-GEPIIENIKHIKALVEYANN-RIEIMVGGGV-TAENYQYICQETGVKQAH-GTRITQMAG 214 (224)
T ss_dssp S-CCCGGGGHHHHHHHHHHHTT-SSEEEECSSC-CTTTHHHHHHHHTCCEEE-ETTCC----
T ss_pred C-CCcHHHHHHHHHHHHHhhCC-CeEEEeCCCC-CHHHHHHHHHhhCCCEEc-cccccCCCC
Confidence 2 2 12335666676665432 6889999999 889999988 58988776 354444333
|
| >1jub_A Dihydroorotate dehydrogenase A; homodimer, alpha-beta barrel, flavoprotein, mutant enzyme, oxidoreductase; HET: FMN; 1.40A {Lactococcus lactis} SCOP: c.1.4.1 PDB: 1ovd_A* 1jue_A* 1dor_A* 2bsl_A* 2bx7_A* 2dor_A* 1jqv_A* 1jrb_A* 1jrc_A* 1jqx_A* | Back alignment and structure |
|---|
Probab=94.73 E-value=0.25 Score=44.71 Aligned_cols=90 Identities=9% Similarity=0.073 Sum_probs=64.4
Q ss_pred CHHHHHHHHHHHHhhcCCcEEEEeecCCCCHH---HHHHHHhcCCcEEEEccCC--------------------------
Q 020013 47 APDYLRDLIRKTRSLTERPFGVGVVLAFPHNE---NIKAILSEKVAVLQVSWGE-------------------------- 97 (332)
Q Consensus 47 ~~e~~~~~i~~~r~~~~~p~gvnl~~~~~~~~---~~~~~~~~~~~~I~~~~g~-------------------------- 97 (332)
+++.+.+.++.+|+.++.|+.+.+-.....++ ..+.+.+.|+|+|.++...
T Consensus 142 ~~e~~~~iv~~vr~~~~~Pv~vKi~~~~~~~~~~~~a~~~~~~G~d~i~v~~~~~~g~~i~~~~~~~~~~~~~~~gG~sg 221 (311)
T 1jub_A 142 DFEATEKLLKEVFTFFTKPLGVKLPPYFDLVHFDIMAEILNQFPLTYVNSVNSIGNGLFIDPEAESVVIKPKDGFGGIGG 221 (311)
T ss_dssp CHHHHHHHHHHHTTTCCSCEEEEECCCCSHHHHHHHHHHHTTSCCCEEEECCCEEEEECEETTTTEESCSGGGGEEEEES
T ss_pred CHHHHHHHHHHHHHhcCCCEEEEECCCCCHHHHHHHHHHHHHcCCcEEEecCCCCcCceeccCCCCcccccCCCCCcccc
Confidence 67888899999998888899887654332222 2556677899998765210
Q ss_pred Cc-----HHHHHHHHhC---CCEEEE--ecCCHHHHHHHHHcCCCEEEE
Q 020013 98 YS-----EELVLEAHSA---GVKVVP--QVGSFDEARKAVNAGVDAIIV 136 (332)
Q Consensus 98 ~~-----~~~i~~~~~~---g~~v~~--~v~s~~~a~~a~~~g~D~ivv 136 (332)
.+ .++++.+++. .++|+. .+.+.+++.+++..|+|.|.+
T Consensus 222 ~~~~~~~~~~i~~v~~~~~~~ipvi~~GGI~~~~da~~~l~~GAd~V~v 270 (311)
T 1jub_A 222 AYIKPTALANVRAFYTRLKPEIQIIGTGGIETGQDAFEHLLCGATMLQI 270 (311)
T ss_dssp GGGHHHHHHHHHHHHTTSCTTSEEEEESSCCSHHHHHHHHHHTCSEEEE
T ss_pred ccccHHHHHHHHHHHHhcCCCCCEEEECCCCCHHHHHHHHHcCCCEEEE
Confidence 00 2456666654 678875 477999999999999999988
|
| >2btm_A TIM, protein (triosephosphate isomerase); thermophilic triose-phosphate, glycolysis; 2.40A {Geobacillus stearothermophilus} SCOP: c.1.1.1 PDB: 1btm_A | Back alignment and structure |
|---|
Probab=94.73 E-value=0.082 Score=46.61 Aligned_cols=118 Identities=23% Similarity=0.315 Sum_probs=71.1
Q ss_pred HHHHHHhcCCcEEEEc-------cCCCcHHH----HHHHHhCCCEEEEecCC-HHHH-------------HHHHHcCC--
Q 020013 79 NIKAILSEKVAVLQVS-------WGEYSEEL----VLEAHSAGVKVVPQVGS-FDEA-------------RKAVNAGV-- 131 (332)
Q Consensus 79 ~~~~~~~~~~~~I~~~-------~g~~~~~~----i~~~~~~g~~v~~~v~s-~~~a-------------~~a~~~g~-- 131 (332)
....+.+.|++++.++ |+. ..+. ++.+.+.|+.++..++. .++- ..++ .+.
T Consensus 78 S~~mL~d~G~~~ViiGHSERR~~f~E-td~~v~~Kv~~Al~~GL~pI~CvGEtleere~g~t~~vv~~Ql~~~l-~~~~~ 155 (252)
T 2btm_A 78 SPVMLKDLGVTYVILGHSERRQMFAE-TDETVNKKVLAAFTRGLIPIICCGESLEEREAGQTNAVVASQVEKAL-AGLTP 155 (252)
T ss_dssp CHHHHHHHTCCEEEESCHHHHHHSCC-CHHHHHHHHHHHHHHTCEEEEEECCCHHHHHTTCHHHHHHHHHHHHH-TTCCH
T ss_pred CHHHHHHcCCCEEEeCchhcccccCC-CHHHHHHHHHHHHHCCCEEEEEcCCcHHHHhCCCHHHHHHHHHHHHH-hcCCH
Confidence 4567788999999985 454 3444 44556679998888873 3311 1122 232
Q ss_pred C----EEEE-ecCCCCcccCCCCc-------hhhhHHHHHHH-hC---CCCCcEEeecCcCCHHHHHHHH-HcCcceeee
Q 020013 132 D----AIIV-QGREAGGHVIGQDG-------LISLLPMVVDL-IG---DRDIPIIAAGGIVDARGYVAAL-SLGAQGICL 194 (332)
Q Consensus 132 D----~ivv-~G~eaGGh~~~~~~-------~~~ll~~i~~~-~~---~~~iPviaaGGI~~~~~v~~al-~~GA~gV~~ 194 (332)
+ .+|+ +..-+=|. |... ....+++.... +. ..+++|+..|+| +++|+.+.+ ..+.||+.+
T Consensus 156 ~~~~~~vIAYEPvWAIGT--G~~Atpe~a~evh~~IR~~l~~~~~~~~a~~vrIlYGGSV-~~~N~~~l~~~~diDG~LV 232 (252)
T 2btm_A 156 EQVKQAVIAYEPIWAIGT--GKSSTPEDANSVCGHIRSVVSRLFGPEAAEAIRIQYGGSV-KPDNIRDFLAQQQIDGALV 232 (252)
T ss_dssp HHHTTCEEEECCGGGTTT--SCCCCHHHHHHHHHHHHHHHHHHHCHHHHTTSEEEEESSC-CTTTHHHHHTSTTCCEEEE
T ss_pred HHcCCEEEEECCHHHhCC--CCCCCHHHHHHHHHHHHHHHHHhcCccccCceeEEEcCCC-CHHHHHHHHcCCCCCeeEe
Confidence 2 3444 44444332 1112 22333332211 11 026899999999 789999999 579999999
Q ss_pred ccccccC
Q 020013 195 GTRFVAS 201 (332)
Q Consensus 195 GT~fl~t 201 (332)
|++-+..
T Consensus 233 GgAsL~a 239 (252)
T 2btm_A 233 GGASLEP 239 (252)
T ss_dssp SGGGSSH
T ss_pred cHHHhCh
Confidence 9997644
|
| >2wqp_A Polysialic acid capsule biosynthesis protein SIAC; NEUB, inhibitor, TIM barrel, sialic acid synthase, transfera; HET: WQP; 1.75A {Neisseria meningitidis} PDB: 2zdr_A 1xuz_A* 1xuu_A 3cm4_A | Back alignment and structure |
|---|
Probab=94.72 E-value=0.67 Score=42.78 Aligned_cols=134 Identities=17% Similarity=0.192 Sum_probs=83.7
Q ss_pred CHHHHHHHHhcCCcEEEEccCC-CcHHHHHHHHhCCCEEEEecC--CHHHHHHHH----HcCCCEEEEecCCCCcccCCC
Q 020013 76 HNENIKAILSEKVAVLQVSWGE-YSEELVLEAHSAGVKVVPQVG--SFDEARKAV----NAGVDAIIVQGREAGGHVIGQ 148 (332)
Q Consensus 76 ~~~~~~~~~~~~~~~I~~~~g~-~~~~~i~~~~~~g~~v~~~v~--s~~~a~~a~----~~g~D~ivv~G~eaGGh~~~~ 148 (332)
+.+.++.+.+.+++++.++.++ ....+++.+-+.|.+|+.+.+ |.+|...+. +.|.+.+++++.. +.. .+
T Consensus 113 d~~svd~l~~~~v~~~KI~S~~~~n~~LL~~va~~gkPviLstGmat~~Ei~~Ave~i~~~G~~iiLlhc~s--~Yp-~~ 189 (349)
T 2wqp_A 113 SRAAALRLQRMDIPAYKIGSGECNNYPLIKLVASFGKPIILSTGMNSIESIKKSVEIIREAGVPYALLHCTN--IYP-TP 189 (349)
T ss_dssp SHHHHHHHHHHTCSCEEECGGGTTCHHHHHHHHTTCSCEEEECTTCCHHHHHHHHHHHHHHTCCEEEEECCC--CSS-CC
T ss_pred CHHHHHHHHhcCCCEEEECcccccCHHHHHHHHhcCCeEEEECCCCCHHHHHHHHHHHHHcCCCEEEEeccC--CCC-CC
Confidence 4678888888899999997443 234678888888999987643 777766554 4577999987542 111 11
Q ss_pred --CchhhhHHHHHHHhCCCCCcEEeecCcCCHHHHHHHHHcCcceeeeccccccCcc--------CCCCHHHHHHHhc
Q 020013 149 --DGLISLLPMVVDLIGDRDIPIIAAGGIVDARGYVAALSLGAQGICLGTRFVASEE--------SYAHPEYKRKLVE 216 (332)
Q Consensus 149 --~~~~~ll~~i~~~~~~~~iPviaaGGI~~~~~v~~al~~GA~gV~~GT~fl~t~E--------s~~~~~~k~~~~~ 216 (332)
...+..++.+++..+ ++||...+==....-..++.++||+ ++=..|-..+. |-.++++++.+.+
T Consensus 190 ~~~~nL~ai~~lk~~f~--~lpVg~sdHt~G~~~~~AAvAlGA~--iIEkH~tld~a~~G~D~~~SL~p~ef~~lv~~ 263 (349)
T 2wqp_A 190 YEDVRLGGMNDLSEAFP--DAIIGLSDHTLDNYACLGAVALGGS--ILERHFTDRMDRPGPDIVCSMNPDTFKELKQG 263 (349)
T ss_dssp GGGCCTHHHHHHHHHCT--TSEEEEECCSSSSHHHHHHHHHTCC--EEEEEBCSCTTCCSTTGGGCBCHHHHHHHHHH
T ss_pred hhhcCHHHHHHHHHHCC--CCCEEeCCCCCcHHHHHHHHHhCCC--EEEeCCCccccCCCCChhhhCCHHHHHHHHHH
Confidence 123566888777642 4888765433223445677889999 33333332222 1235666666654
|
| >2jgq_A Triosephosphate isomerase; glycolysis, pentose shunt, gluconeogenesis, lipid synthesis, fatty acid biosynthesis; HET: QGA; 2.3A {Helicobacter pylori} | Back alignment and structure |
|---|
Probab=94.70 E-value=0.21 Score=43.52 Aligned_cols=118 Identities=15% Similarity=0.183 Sum_probs=72.0
Q ss_pred HHHHHHhcCCcEEEEc-------cCCCcHH----HHHHHHhCCCEEEEecCCHHHHHHH-------------HHcC---C
Q 020013 79 NIKAILSEKVAVLQVS-------WGEYSEE----LVLEAHSAGVKVVPQVGSFDEARKA-------------VNAG---V 131 (332)
Q Consensus 79 ~~~~~~~~~~~~I~~~-------~g~~~~~----~i~~~~~~g~~v~~~v~s~~~a~~a-------------~~~g---~ 131 (332)
..+.+.+.|++.+.++ |+. ..+ -++.+.+.|+.++..++...+.+.+ .... .
T Consensus 73 S~~mL~d~G~~~ViiGHSERR~~f~E-td~~v~~Kv~~Al~~GL~pI~CvGEtleere~g~~~t~~vv~~Ql~~l~~~~~ 151 (233)
T 2jgq_A 73 TSKHLEELKIHTLLIGHSERRTLLKE-SPSFLKEKFDFFKSKNFKIVYCIGEELTTREKGFKAVKEFLSEQLENIDLNYP 151 (233)
T ss_dssp BHHHHHHTTCCEEEECCHHHHHTTCC-CHHHHHHHHHHHHHTTCEEEEEECCCHHHHHHCHHHHHHHHHHHHTTSCTTCT
T ss_pred CHHHHHHcCCCEEEeCchhhhcccCC-CHHHHHHHHHHHHHCCCEEEEEcCCcHHHHhcCchhHHHHHHHHHHhhhhhcc
Confidence 3567888999999985 454 333 2345567899998888743222222 0111 1
Q ss_pred CEEEE-ecCCCCcccCCCCchhhhHHH----HHHHhCCCCCcEEeecCcCCHHHHHHHHH-cCcceeeeccccccC
Q 020013 132 DAIIV-QGREAGGHVIGQDGLISLLPM----VVDLIGDRDIPIIAAGGIVDARGYVAALS-LGAQGICLGTRFVAS 201 (332)
Q Consensus 132 D~ivv-~G~eaGGh~~~~~~~~~ll~~----i~~~~~~~~iPviaaGGI~~~~~v~~al~-~GA~gV~~GT~fl~t 201 (332)
..+++ +...+=|. |...+...+.+ +++.+. .+++|+..|+| +++|+.+.+. .+.||+.+|++-+..
T Consensus 152 ~~vIAYEPvWAIGT--G~~At~e~a~ev~~~IR~~l~-~~vrIlYGGSV-~~~N~~~l~~~~diDG~LVGgAsl~a 223 (233)
T 2jgq_A 152 NLVVAYEPIWAIGT--KKSASLEDIYLTHGFLKQILN-QKTPLLYGGSV-NTQNAKEILGIDSVDGLLIGSASWEL 223 (233)
T ss_dssp TEEEEECCGGGTTC----CCCHHHHHHHHHHHHHHSC-TTSCEEEESSC-CTTTHHHHHTSTTCCEEEESGGGGSH
T ss_pred ceEEEEeCHHHhCC--CCCCCHHHHHHHHHHHHHHHh-cCCcEEEcCCc-ChhhHHHHhcCCCCCeeEecHHHhCh
Confidence 34444 44444443 22233333333 333331 26899999999 7899988775 699999999997754
|
| >3to5_A CHEY homolog; alpha(5)beta(5), chemotaxis, FLIM, phosphorylation, motor AC signaling protein; 1.65A {Vibrio cholerae} | Back alignment and structure |
|---|
Probab=94.69 E-value=0.38 Score=37.94 Aligned_cols=85 Identities=12% Similarity=0.064 Sum_probs=61.5
Q ss_pred HHHHhCCCEEEEecCCHHHHHHHH-HcCCCEEEEecCCCCcccCCCCchhhhHHHHHHHhCCCCCcEEeecCcCCHHHHH
Q 020013 104 LEAHSAGVKVVPQVGSFDEARKAV-NAGVDAIIVQGREAGGHVIGQDGLISLLPMVVDLIGDRDIPIIAAGGIVDARGYV 182 (332)
Q Consensus 104 ~~~~~~g~~v~~~v~s~~~a~~a~-~~g~D~ivv~G~eaGGh~~~~~~~~~ll~~i~~~~~~~~iPviaaGGI~~~~~v~ 182 (332)
+.+++.|..++..+.+.++|.... +..+|.|+++=.= ....-+.+++++++.-...++|||.-.+-.+.++..
T Consensus 30 ~~L~~~G~~~v~~a~~g~~al~~~~~~~~DlillD~~M------P~mdG~el~~~ir~~~~~~~ipvI~lTa~~~~~~~~ 103 (134)
T 3to5_A 30 NLLRDLGFNNTQEADDGLTALPMLKKGDFDFVVTDWNM------PGMQGIDLLKNIRADEELKHLPVLMITAEAKREQII 103 (134)
T ss_dssp HHHHHTTCCCEEEESSHHHHHHHHHHHCCSEEEEESCC------SSSCHHHHHHHHHHSTTTTTCCEEEEESSCCHHHHH
T ss_pred HHHHHcCCcEEEEECCHHHHHHHHHhCCCCEEEEcCCC------CCCCHHHHHHHHHhCCCCCCCeEEEEECCCCHHHHH
Confidence 345667887666778888877654 4579999985321 112347788888754322379999999998999999
Q ss_pred HHHHcCcceeee
Q 020013 183 AALSLGAQGICL 194 (332)
Q Consensus 183 ~al~~GA~gV~~ 194 (332)
+++.+||++...
T Consensus 104 ~~~~~Ga~~yl~ 115 (134)
T 3to5_A 104 EAAQAGVNGYIV 115 (134)
T ss_dssp HHHHTTCCEEEE
T ss_pred HHHHCCCCEEEE
Confidence 999999998753
|
| >3igs_A N-acetylmannosamine-6-phosphate 2-epimerase 2; energy metabolism, sugars, csgid, carbohydrate metabolism, isomerase; HET: MSE 16G; 1.50A {Salmonella enterica subsp} SCOP: c.1.2.0 | Back alignment and structure |
|---|
Probab=94.68 E-value=0.58 Score=40.62 Aligned_cols=108 Identities=20% Similarity=0.149 Sum_probs=73.1
Q ss_pred cHHHHHHHHhCCCceee-cCCCCCCHHHHHHHHHHHHhhcCCcEEEEeecCCCCHHHHHHHHhcCCcEEEEc-cC-----
Q 020013 24 GPELVAAVANAGGLGLL-RAPDWEAPDYLRDLIRKTRSLTERPFGVGVVLAFPHNENIKAILSEKVAVLQVS-WG----- 96 (332)
Q Consensus 24 ~~~la~avs~aGglG~i-~~~~~~~~e~~~~~i~~~r~~~~~p~gvnl~~~~~~~~~~~~~~~~~~~~I~~~-~g----- 96 (332)
+.+.+..+.++|.=.++ ......+|+.+.+.++.+++. +.++.+++. ..+..+.+.+.|+|+|.++ .|
T Consensus 90 ~~~~i~~~~~~Gad~V~l~~~~~~~p~~l~~~i~~~~~~-g~~v~~~v~----t~eea~~a~~~Gad~Ig~~~~g~t~~~ 164 (232)
T 3igs_A 90 FLDDVDALAQAGAAIIAVDGTARQRPVAVEALLARIHHH-HLLTMADCS----SVDDGLACQRLGADIIGTTMSGYTTPD 164 (232)
T ss_dssp SHHHHHHHHHHTCSEEEEECCSSCCSSCHHHHHHHHHHT-TCEEEEECC----SHHHHHHHHHTTCSEEECTTTTSSSSS
T ss_pred cHHHHHHHHHcCCCEEEECccccCCHHHHHHHHHHHHHC-CCEEEEeCC----CHHHHHHHHhCCCCEEEEcCccCCCCC
Confidence 34456666677743222 221223567778888888764 455665543 2566778889999999642 11
Q ss_pred ---CCcHHHHHHHHhCCCEEEEe--cCCHHHHHHHHHcCCCEEEE
Q 020013 97 ---EYSEELVLEAHSAGVKVVPQ--VGSFDEARKAVNAGVDAIIV 136 (332)
Q Consensus 97 ---~~~~~~i~~~~~~g~~v~~~--v~s~~~a~~a~~~g~D~ivv 136 (332)
.+..++++++++.+++++.. +.+++++.++.+.|+|+|++
T Consensus 165 ~~~~~~~~~i~~l~~~~ipvIA~GGI~t~~d~~~~~~~GadgV~V 209 (232)
T 3igs_A 165 TPEEPDLPLVKALHDAGCRVIAEGRYNSPALAAEAIRYGAWAVTV 209 (232)
T ss_dssp CCSSCCHHHHHHHHHTTCCEEEESCCCSHHHHHHHHHTTCSEEEE
T ss_pred CCCCCCHHHHHHHHhcCCcEEEECCCCCHHHHHHHHHcCCCEEEE
Confidence 12346777777768888854 67899999999999999999
|
| >3hzh_A Chemotaxis response regulator (CHEY-3); phosphatase, complex, response regulator, receiver domain, two-component signal transduction; HET: BFD; 1.96A {Borrelia burgdorferi} | Back alignment and structure |
|---|
Probab=94.65 E-value=0.46 Score=37.63 Aligned_cols=84 Identities=14% Similarity=0.134 Sum_probs=61.5
Q ss_pred HHHHHhCCCEEEEecCCHHHHHHHH-Hc--CCCEEEEecCCCCcccCCCCchhhhHHHHHHHhCCCCCcEEeecCcCCHH
Q 020013 103 VLEAHSAGVKVVPQVGSFDEARKAV-NA--GVDAIIVQGREAGGHVIGQDGLISLLPMVVDLIGDRDIPIIAAGGIVDAR 179 (332)
Q Consensus 103 i~~~~~~g~~v~~~v~s~~~a~~a~-~~--g~D~ivv~G~eaGGh~~~~~~~~~ll~~i~~~~~~~~iPviaaGGI~~~~ 179 (332)
.+.+++.|..++..+.+.+++.... +. .+|.|++.-.-. ....+.++.++++... ++|||+-.+-.+.+
T Consensus 53 ~~~L~~~g~~v~~~~~~~~~al~~l~~~~~~~dliilD~~l~------~~~g~~~~~~lr~~~~--~~~ii~ls~~~~~~ 124 (157)
T 3hzh_A 53 TQIFTSEGFNIIDTAADGEEAVIKYKNHYPNIDIVTLXITMP------KMDGITCLSNIMEFDK--NARVIMISALGKEQ 124 (157)
T ss_dssp HHHHHHTTCEEEEEESSHHHHHHHHHHHGGGCCEEEECSSCS------SSCHHHHHHHHHHHCT--TCCEEEEESCCCHH
T ss_pred HHHHHhCCCeEEEEECCHHHHHHHHHhcCCCCCEEEEeccCC------CccHHHHHHHHHhhCC--CCcEEEEeccCcHH
Confidence 3445667888876788888887654 34 689999853211 1234677888877553 68999988888999
Q ss_pred HHHHHHHcCcceeee
Q 020013 180 GYVAALSLGAQGICL 194 (332)
Q Consensus 180 ~v~~al~~GA~gV~~ 194 (332)
.+.+++.+|++++..
T Consensus 125 ~~~~~~~~g~~~~l~ 139 (157)
T 3hzh_A 125 LVKDCLIKGAKTFIV 139 (157)
T ss_dssp HHHHHHHTTCSEEEE
T ss_pred HHHHHHHcCCCEEEe
Confidence 999999999998764
|
| >2c6q_A GMP reductase 2; TIM barrel, metal-binding, NADP, oxidoreductase, potassium; HET: IMP NDP; 1.70A {Homo sapiens} PDB: 2bzn_A* 2a7r_A* 2ble_A* 2bwg_A* | Back alignment and structure |
|---|
Probab=94.54 E-value=0.45 Score=44.05 Aligned_cols=87 Identities=16% Similarity=0.274 Sum_probs=62.6
Q ss_pred CHHHHHHHHHHHHhhc-CCcEEEEeecCCCCHHHHHHHHhcCCcEEEEccCC--------------Cc----HHHHHHHH
Q 020013 47 APDYLRDLIRKTRSLT-ERPFGVGVVLAFPHNENIKAILSEKVAVLQVSWGE--------------YS----EELVLEAH 107 (332)
Q Consensus 47 ~~e~~~~~i~~~r~~~-~~p~gvnl~~~~~~~~~~~~~~~~~~~~I~~~~g~--------------~~----~~~i~~~~ 107 (332)
.+..+.+.++++|+.+ +.|+.+..... .+..+.+.+.|+|+|.++.+. +. .++.+..+
T Consensus 144 ~~~~~~~~i~~lr~~~~~~~vi~g~v~t---~e~A~~a~~aGaD~I~v~~g~G~~~~~r~~~g~~~p~~~~l~~v~~~~~ 220 (351)
T 2c6q_A 144 YSEHFVEFVKDVRKRFPQHTIMAGNVVT---GEMVEELILSGADIIKVGIGPGSVCTTRKKTGVGYPQLSAVMECADAAH 220 (351)
T ss_dssp TBHHHHHHHHHHHHHCTTSEEEEEEECS---HHHHHHHHHTTCSEEEECSSCSTTBCHHHHHCBCCCHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHhcCCCeEEEEeCCC---HHHHHHHHHhCCCEEEECCCCCcCcCccccCCCCccHHHHHHHHHHHHh
Confidence 3445667788888876 67887654432 566778899999999775321 11 12333344
Q ss_pred hCCCEEEE--ecCCHHHHHHHHHcCCCEEEE
Q 020013 108 SAGVKVVP--QVGSFDEARKAVNAGVDAIIV 136 (332)
Q Consensus 108 ~~g~~v~~--~v~s~~~a~~a~~~g~D~ivv 136 (332)
..+++|+. .+.+..++.+++..|+|+|.+
T Consensus 221 ~~~ipvIa~GGI~~g~di~kAlalGA~~V~v 251 (351)
T 2c6q_A 221 GLKGHIISDGGCSCPGDVAKAFGAGADFVML 251 (351)
T ss_dssp HTTCEEEEESCCCSHHHHHHHHHTTCSEEEE
T ss_pred hcCCcEEEeCCCCCHHHHHHHHHcCCCceec
Confidence 45899997 688999999999999999988
|
| >1p0k_A Isopentenyl-diphosphate delta-isomerase; terpene biosynthesis, dimethylallyl diphosphate, flavoprotein; 1.90A {Bacillus subtilis} SCOP: c.1.4.1 PDB: 1p0n_A* | Back alignment and structure |
|---|
Probab=94.46 E-value=0.43 Score=44.01 Aligned_cols=86 Identities=14% Similarity=0.060 Sum_probs=60.2
Q ss_pred HHHHHHHHHhhcCCcEEEEeecCCCCHHHHHHHHhcCCcEEEEc--cC----------------------CCcHHHHHHH
Q 020013 51 LRDLIRKTRSLTERPFGVGVVLAFPHNENIKAILSEKVAVLQVS--WG----------------------EYSEELVLEA 106 (332)
Q Consensus 51 ~~~~i~~~r~~~~~p~gvnl~~~~~~~~~~~~~~~~~~~~I~~~--~g----------------------~~~~~~i~~~ 106 (332)
+.+.++++++.++.|+.+.+..+....+.++.+.+.|+|+|.+. .| .+..+.+..+
T Consensus 166 ~~~~i~~vr~~~~~Pv~vK~~~~~~~~~~a~~a~~~Gad~I~v~~~ggt~~~~~e~~r~~~~~~~~~~~g~~~~~~l~~v 245 (349)
T 1p0k_A 166 ALKRIEQICSRVSVPVIVKEVGFGMSKASAGKLYEAGAAAVDIGGYGGTNFSKIENLRRQRQISFFNSWGISTAASLAEI 245 (349)
T ss_dssp HHHHHHHHHHHCSSCEEEEEESSCCCHHHHHHHHHHTCSEEEEEC---------------CCGGGGTTCSCCHHHHHHHH
T ss_pred HHHHHHHHHHHcCCCEEEEecCCCCCHHHHHHHHHcCCCEEEEcCCCCcchhhHHHhhcccchhhhhccCccHHHHHHHH
Confidence 45678888877789998876422123567888889999999883 22 1112234444
Q ss_pred Hh--CCCEEEE--ecCCHHHHHHHHHcCCCEEEE
Q 020013 107 HS--AGVKVVP--QVGSFDEARKAVNAGVDAIIV 136 (332)
Q Consensus 107 ~~--~g~~v~~--~v~s~~~a~~a~~~g~D~ivv 136 (332)
++ .+++|+. .+.+.+++.+++..|+|+|.+
T Consensus 246 ~~~~~~ipvia~GGI~~~~d~~k~l~~GAd~V~i 279 (349)
T 1p0k_A 246 RSEFPASTMIASGGLQDALDVAKAIALGASCTGM 279 (349)
T ss_dssp HHHCTTSEEEEESSCCSHHHHHHHHHTTCSEEEE
T ss_pred HHhcCCCeEEEECCCCCHHHHHHHHHcCCCEEEE
Confidence 44 2688875 477999999999999999988
|
| >1vli_A Spore coat polysaccharide biosynthesis protein SP; 2636322, JCSG, protein structure initiative, BS SPSE, PSI; 2.38A {Bacillus subtilis} SCOP: b.85.1.1 c.1.10.6 | Back alignment and structure |
|---|
Probab=94.36 E-value=1.1 Score=41.84 Aligned_cols=143 Identities=13% Similarity=0.107 Sum_probs=87.5
Q ss_pred EEEeecCCCCHHHHHHHHhcCCcEEEEccCC-CcHHHHHHHHhCCCEEEEecC--CHHHHHHHH----HcCC-CEEEEec
Q 020013 67 GVGVVLAFPHNENIKAILSEKVAVLQVSWGE-YSEELVLEAHSAGVKVVPQVG--SFDEARKAV----NAGV-DAIIVQG 138 (332)
Q Consensus 67 gvnl~~~~~~~~~~~~~~~~~~~~I~~~~g~-~~~~~i~~~~~~g~~v~~~v~--s~~~a~~a~----~~g~-D~ivv~G 138 (332)
|+-++...-+.+.++.+.+.+++++.++.++ ....+++.+-+.|.+|+.+.+ |.+|...+. +.|. +.+++++
T Consensus 114 Gi~~~stpfD~~svd~l~~~~vd~~KIgS~~~~N~pLL~~va~~gKPViLStGmaTl~Ei~~Ave~i~~~Gn~~iiLlhc 193 (385)
T 1vli_A 114 QVIFLSTVCDEGSADLLQSTSPSAFKIASYEINHLPLLKYVARLNRPMIFSTAGAEISDVHEAWRTIRAEGNNQIAIMHC 193 (385)
T ss_dssp TCEEECBCCSHHHHHHHHTTCCSCEEECGGGTTCHHHHHHHHTTCSCEEEECTTCCHHHHHHHHHHHHTTTCCCEEEEEE
T ss_pred CCcEEEccCCHHHHHHHHhcCCCEEEECcccccCHHHHHHHHhcCCeEEEECCCCCHHHHHHHHHHHHHCCCCcEEEEec
Confidence 4444444445778888888899999996443 334678888888999987653 787766554 4576 8888875
Q ss_pred CCCCcccCCC--CchhhhHHHHHHHhCCCCCcEEeecCcCC-HHHHHHHHHcCcceeeeccccccCcc--------CCCC
Q 020013 139 REAGGHVIGQ--DGLISLLPMVVDLIGDRDIPIIAAGGIVD-ARGYVAALSLGAQGICLGTRFVASEE--------SYAH 207 (332)
Q Consensus 139 ~eaGGh~~~~--~~~~~ll~~i~~~~~~~~iPviaaGGI~~-~~~v~~al~~GA~gV~~GT~fl~t~E--------s~~~ 207 (332)
.. +.. .+ ...+..++.+++..+ ++||...+=-.. ..-..++.++||+ ++=.-|-..+. |-.+
T Consensus 194 ~s--~YP-tp~~~~nL~aI~~Lk~~f~--~lpVG~SdHt~G~~~~~~AAvAlGA~--iIEkHftldra~~G~D~~~SL~P 266 (385)
T 1vli_A 194 VA--KYP-APPEYSNLSVIPMLAAAFP--EAVIGFSDHSEHPTEAPCAAVRLGAK--LIEKHFTIDKNLPGADHSFALNP 266 (385)
T ss_dssp CS--SSS-CCGGGCCTTHHHHHHHHST--TSEEEEEECCSSSSHHHHHHHHTTCS--EEEEEBCSCTTSSCSSCTTSBCH
T ss_pred cC--CCC-CChhhcCHHHHHHHHHHcC--CCCEEeCCCCCCchHHHHHHHHcCCC--EEEeCCCccccCCCCchhhhCCH
Confidence 42 111 11 123566888877652 488866543322 3445677899999 33333332222 2235
Q ss_pred HHHHHHHhc
Q 020013 208 PEYKRKLVE 216 (332)
Q Consensus 208 ~~~k~~~~~ 216 (332)
+++++.+.+
T Consensus 267 ~ef~~lv~~ 275 (385)
T 1vli_A 267 DELKEMVDG 275 (385)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 666666554
|
| >3tfx_A Orotidine 5'-phosphate decarboxylase; PSI-biology, nysgrc, 000529, structural genomics, NEW YORK S genomics research consortium; 2.19A {Lactobacillus acidophilus} | Back alignment and structure |
|---|
Probab=94.33 E-value=0.51 Score=41.72 Aligned_cols=162 Identities=17% Similarity=0.164 Sum_probs=87.6
Q ss_pred CCcHHHHHHHHhC-C-Cc-eeecCCCCC--CHHHHHHHHHHHHhhcCCcEEEEeecCCCC---HHHHHHHHhcCCcEEEE
Q 020013 22 ISGPELVAAVANA-G-GL-GLLRAPDWE--APDYLRDLIRKTRSLTERPFGVGVVLAFPH---NENIKAILSEKVAVLQV 93 (332)
Q Consensus 22 ~s~~~la~avs~a-G-gl-G~i~~~~~~--~~e~~~~~i~~~r~~~~~p~gvnl~~~~~~---~~~~~~~~~~~~~~I~~ 93 (332)
+++.+-+.++.+. + .+ .++..+ +. .... .+.++.+++. +.++-..+-..+-. ...++.+.+.++|++.+
T Consensus 13 ~~~~~~al~l~~~l~~~v~~~~KvG-~~l~~~~G-~~~v~~Lk~~-g~~VflDlK~~DIpnTv~~a~~~~~~~gad~vTV 89 (259)
T 3tfx_A 13 LDNEEQLNKILSKLGDPHDVFVKVG-MELFYNAG-IDVIKKLTQQ-GYKIFLDLKMHDIPNTVYNGAKALAKLGITFTTV 89 (259)
T ss_dssp CSCHHHHHHHHHTTCCGGGCEEEEC-HHHHHHHC-HHHHHHHHHT-TCEEEEEEEECSCHHHHHHHHHHHHTTTCSEEEE
T ss_pred CCCHHHHHHHHHHhCcccceEEEeC-HHHHHhcC-HHHHHHHHHC-CCcEEEEecccccchHHHHHHHHHHhcCCCEEEE
Confidence 5666666666654 2 34 455432 10 0000 1234555543 44554554443321 23456677789999999
Q ss_pred ccCCCcHHHHH----HHHh---CC---CEEEEe--cCCH--------------------HHHHHHHHcCCCEEEEecCCC
Q 020013 94 SWGEYSEELVL----EAHS---AG---VKVVPQ--VGSF--------------------DEARKAVNAGVDAIIVQGREA 141 (332)
Q Consensus 94 ~~g~~~~~~i~----~~~~---~g---~~v~~~--v~s~--------------------~~a~~a~~~g~D~ivv~G~ea 141 (332)
|.-. ..+.++ .+++ .| .+++.. .+|. +-++.+.++|+|++|+..
T Consensus 90 h~~~-G~~~~~aa~~~~~~~~~~g~~~~~li~Vt~lTS~~~~~l~~~~g~~~~~~e~v~~~A~~a~~~G~dGvV~s~--- 165 (259)
T 3tfx_A 90 HALG-GSQMIKSAKDGLIAGTPAGHSVPKLLAVTELTSISDDVLRNEQNCRLPMAEQVLSLAKMAKHSGADGVICSP--- 165 (259)
T ss_dssp EGGG-CHHHHHHHHHHHHHHSCTTSCCCEEEEECSCTTCCHHHHHHTSCBSSCHHHHHHHHHHHHHHTTCCEEECCG---
T ss_pred cCCC-CHHHHHHHHHHHHHhcccCCCCceEEEEEEeCCCCHHHHHHHhCCCCCHHHHHHHHHHHHHHhCCCEEEECH---
Confidence 7311 223333 3332 12 334421 2221 123445678999998721
Q ss_pred CcccCCCCchhhhHHHHHHHhCCCCCcEEeecCcCCHH----------HHHHHHHcCcceeeeccccccCcc
Q 020013 142 GGHVIGQDGLISLLPMVVDLIGDRDIPIIAAGGIVDAR----------GYVAALSLGAQGICLGTRFVASEE 203 (332)
Q Consensus 142 GGh~~~~~~~~~ll~~i~~~~~~~~iPviaaGGI~~~~----------~v~~al~~GA~gV~~GT~fl~t~E 203 (332)
.-+..+++..+ +-.++...||+-.. +..+++.+|||-+++|+.+..++.
T Consensus 166 -----------~e~~~ir~~~~--~~f~~vtPGIr~~g~~~gDQ~Rv~T~~~a~~aGad~iVvGr~I~~a~d 224 (259)
T 3tfx_A 166 -----------LEVKKLHENIG--DDFLYVTPGIRPAGNAKDDQSRVATPKMAKEWGSSAIVVGRPITLASD 224 (259)
T ss_dssp -----------GGHHHHHHHHC--SSSEEEECCCCCC-----------CHHHHHHTTCSEEEECHHHHTSSS
T ss_pred -----------HHHHHHHhhcC--CccEEEcCCcCCCCCCcCCccccCCHHHHHHcCCCEEEEChHHhCCCC
Confidence 11344555553 34577889995321 277889999999999999887653
|
| >1o5x_A TIM, triosephosphate isomerase; 2- phosphoglycerate, META-phosphate, catalytic LOOP6; HET: 2PG; 1.10A {Plasmodium falciparum} SCOP: c.1.1.1 PDB: 1lzo_A 1m7o_A* 1m7p_A* 1lyx_A* 1ydv_A 2vfi_A* 3psw_A 3psv_A 3pwa_A 2vfh_A* 2vff_A 2vfg_A* 1vga_A 1woa_A* 1wob_A 3pvf_A 3py2_A 2vfd_A 2vfe_A* | Back alignment and structure |
|---|
Probab=94.32 E-value=0.2 Score=44.00 Aligned_cols=117 Identities=17% Similarity=0.236 Sum_probs=71.0
Q ss_pred HHHHHHhcCCcEEEEc-------cCCCcHH----HHHHHHhCCCEEEEecCCHHHHHH--------------HHHcCC--
Q 020013 79 NIKAILSEKVAVLQVS-------WGEYSEE----LVLEAHSAGVKVVPQVGSFDEARK--------------AVNAGV-- 131 (332)
Q Consensus 79 ~~~~~~~~~~~~I~~~-------~g~~~~~----~i~~~~~~g~~v~~~v~s~~~a~~--------------a~~~g~-- 131 (332)
....+.+.|++++.++ |+. ..+ -++.+.+.|+.++..++...+-+. ++ .+.
T Consensus 79 S~~mL~d~G~~~ViiGHSERR~~f~E-td~~v~~Kv~~Al~~GL~pI~CvGEtleere~g~t~~vv~~Ql~~~l-~~~~~ 156 (248)
T 1o5x_A 79 SAEIAKDLNIEYVIIGHFERRKYFHE-TDEDVREKLQASLKNNLKAVVCFGESLEQREQNKTIEVITKQVKAFV-DLIDN 156 (248)
T ss_dssp CHHHHHHTTCCEEEECCHHHHHHSCC-CHHHHHHHHHHHHHTTCEEEEEECCCHHHHHTTCHHHHHHHHHHTTG-GGCCC
T ss_pred CHHHHHHcCCCEEEeCChhhhcccCC-CHHHHHHHHHHHHHCCCEEEEEcCCcHHHHhcCChHHHHHHHHHHHH-hhhhh
Confidence 4567888999999985 454 333 234456789999888874322221 11 122
Q ss_pred --CEEEE-ecCCCCcccCCCCch-------hhhHHHHHHH-hC---CCCCcEEeecCcCCHHHHHHHHH-cCcceeeecc
Q 020013 132 --DAIIV-QGREAGGHVIGQDGL-------ISLLPMVVDL-IG---DRDIPIIAAGGIVDARGYVAALS-LGAQGICLGT 196 (332)
Q Consensus 132 --D~ivv-~G~eaGGh~~~~~~~-------~~ll~~i~~~-~~---~~~iPviaaGGI~~~~~v~~al~-~GA~gV~~GT 196 (332)
..|++ +..-+=|. |...+ ...+++.... +. ..+++|+..|+| +++|+.+.++ .+.||+.+|+
T Consensus 157 ~~~~vIAYEPvWAIGT--G~~Atpe~a~evh~~IR~~l~~~~~~~~a~~vrIlYGGSV-~~~N~~~l~~~~diDG~LVGg 233 (248)
T 1o5x_A 157 FDNVILVYEPLWAIGT--GKTATPEQAQLVHKEIRKIVKDTCGEKQANQIRILYGGSV-NTENCSSLIQQEDIDGFLVGN 233 (248)
T ss_dssp TTSEEEEECCGGGSSS--SCCCCHHHHHHHHHHHHHHHHHHTCHHHHHHSEEEECSCC-CTTTHHHHHTSTTCCEEEECG
T ss_pred hcCEEEEECCHHHhCC--CCCCCHHHHHHHHHHHHHHHHHhcCccccCcceEEEcCCC-CHHHHHHHHcCCCCCeeEeeH
Confidence 44554 44344333 12122 2233332211 10 014899999999 7889999998 8999999999
Q ss_pred cccc
Q 020013 197 RFVA 200 (332)
Q Consensus 197 ~fl~ 200 (332)
+-+.
T Consensus 234 AsL~ 237 (248)
T 1o5x_A 234 ASLK 237 (248)
T ss_dssp GGGS
T ss_pred HHHH
Confidence 9876
|
| >3l21_A DHDPS, dihydrodipicolinate synthase; DAPA, dimer, RV2753C, lysine biosynthesis, amino-acid biosynthesis, diaminopimelate biosynthesis; HET: KPI CME; 2.10A {Mycobacterium tuberculosis} SCOP: c.1.10.1 PDB: 1xxx_A | Back alignment and structure |
|---|
Probab=94.30 E-value=0.13 Score=46.68 Aligned_cols=79 Identities=27% Similarity=0.436 Sum_probs=50.5
Q ss_pred HHHHHHcCCCEEEEecCCCCcccCCCCchhhhHHHHHHHhCCCCCcEEeecCcCCHHHHH----HHHHcCcceeeecccc
Q 020013 123 ARKAVNAGVDAIIVQGREAGGHVIGQDGLISLLPMVVDLIGDRDIPIIAAGGIVDARGYV----AALSLGAQGICLGTRF 198 (332)
Q Consensus 123 a~~a~~~g~D~ivv~G~eaGGh~~~~~~~~~ll~~i~~~~~~~~iPviaaGGI~~~~~v~----~al~~GA~gV~~GT~f 198 (332)
+....+.|+|+|++-|..+-++......-..++..+++...+ ++|||+.=|=.+-++.. .+-.+|||++++-+.+
T Consensus 42 v~~li~~Gv~gi~v~GttGE~~~Lt~~Er~~v~~~~~~~~~g-rvpviaGvg~~~t~~ai~la~~a~~~Gadavlv~~P~ 120 (304)
T 3l21_A 42 ANHLVDQGCDGLVVSGTTGESPTTTDGEKIELLRAVLEAVGD-RARVIAGAGTYDTAHSIRLAKACAAEGAHGLLVVTPY 120 (304)
T ss_dssp HHHHHHTTCSEEEESSTTTTGGGSCHHHHHHHHHHHHHHHTT-TSEEEEECCCSCHHHHHHHHHHHHHHTCSEEEEECCC
T ss_pred HHHHHHcCCCEEEeCccccchhhCCHHHHHHHHHHHHHHhCC-CCeEEEeCCCCCHHHHHHHHHHHHHcCCCEEEECCCC
Confidence 445668899999997765444332222235566666776643 68988754433444443 3345899999999988
Q ss_pred ccCc
Q 020013 199 VASE 202 (332)
Q Consensus 199 l~t~ 202 (332)
....
T Consensus 121 y~~~ 124 (304)
T 3l21_A 121 YSKP 124 (304)
T ss_dssp SSCC
T ss_pred CCCC
Confidence 7653
|
| >1vrd_A Inosine-5'-monophosphate dehydrogenase; TM1347, structural G joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.18A {Thermotoga maritima} SCOP: c.1.5.1 | Back alignment and structure |
|---|
Probab=94.29 E-value=0.78 Score=44.33 Aligned_cols=110 Identities=18% Similarity=0.211 Sum_probs=71.4
Q ss_pred cHHHHHHHHhCCCceeecCCCCCCHHHHHHHHHHHHhhc-CCcEEEEeecCCCCHHHHHHHHhcCCcEEEEccC------
Q 020013 24 GPELVAAVANAGGLGLLRAPDWEAPDYLRDLIRKTRSLT-ERPFGVGVVLAFPHNENIKAILSEKVAVLQVSWG------ 96 (332)
Q Consensus 24 ~~~la~avs~aGglG~i~~~~~~~~e~~~~~i~~~r~~~-~~p~gvnl~~~~~~~~~~~~~~~~~~~~I~~~~g------ 96 (332)
..+.+..+.++|.-.+........+....+.++++++.+ +.|+.+.-.. ..+..+.+.+.|+|+|.++.+
T Consensus 238 ~~~~a~~l~~aGvd~v~i~~~~G~~~~~~e~i~~i~~~~p~~pvi~g~~~---t~e~a~~l~~~G~d~I~v~~~~G~~~~ 314 (494)
T 1vrd_A 238 TMERVEKLVKAGVDVIVIDTAHGHSRRVIETLEMIKADYPDLPVVAGNVA---TPEGTEALIKAGADAVKVGVGPGSICT 314 (494)
T ss_dssp HHHHHHHHHHTTCSEEEECCSCCSSHHHHHHHHHHHHHCTTSCEEEEEEC---SHHHHHHHHHTTCSEEEECSSCSTTCH
T ss_pred HHHHHHHHHHhCCCEEEEEecCCchHHHHHHHHHHHHHCCCceEEeCCcC---CHHHHHHHHHcCCCEEEEcCCCCcccc
Confidence 356777777777544332111123445567788888776 6787654222 245667888999999988421
Q ss_pred --------CCcHHHHHH----HHhCCCEEEE--ecCCHHHHHHHHHcCCCEEEE
Q 020013 97 --------EYSEELVLE----AHSAGVKVVP--QVGSFDEARKAVNAGVDAIIV 136 (332)
Q Consensus 97 --------~~~~~~i~~----~~~~g~~v~~--~v~s~~~a~~a~~~g~D~ivv 136 (332)
.+....+.. +++.+++|+. .+.+..++.+++..|+|+|.+
T Consensus 315 ~~~~~~~g~p~~~~l~~v~~~~~~~~ipvia~GGI~~~~di~kala~GAd~V~i 368 (494)
T 1vrd_A 315 TRVVAGVGVPQLTAVMECSEVARKYDVPIIADGGIRYSGDIVKALAAGAESVMV 368 (494)
T ss_dssp HHHHHCCCCCHHHHHHHHHHHHHTTTCCEEEESCCCSHHHHHHHHHTTCSEEEE
T ss_pred ccccCCCCccHHHHHHHHHHHHhhcCCCEEEECCcCCHHHHHHHHHcCCCEEEE
Confidence 222222222 3334789987 688999999999999999987
|
| >2j27_A Triosephosphate isomerase glycosomal; TIM, 2PG, LOOP7, glycosome, TIM-barrel, gluconeogenesis, lipid synthesis, atomic resolution; 1.15A {Trypanosoma brucei brucei} PDB: 2j24_A 1kv5_A 1tpe_A 1tsi_A* 3tim_A 2v2c_A 2v0t_A 1tri_A 1tti_A 1mss_A 1ttj_A* 2wsq_A 2y70_A 2y6z_A* 1ml1_A 2wsr_A 3q37_A 2v2h_A 2v2d_A 1dkw_A ... | Back alignment and structure |
|---|
Probab=94.28 E-value=0.26 Score=43.31 Aligned_cols=117 Identities=19% Similarity=0.314 Sum_probs=71.0
Q ss_pred HHHHHHhcCCcEEEEc-------cCCCcHHH----HHHHHhCCCEEEEecCC-HHHH-------------HHHHHcCC--
Q 020013 79 NIKAILSEKVAVLQVS-------WGEYSEEL----VLEAHSAGVKVVPQVGS-FDEA-------------RKAVNAGV-- 131 (332)
Q Consensus 79 ~~~~~~~~~~~~I~~~-------~g~~~~~~----i~~~~~~g~~v~~~v~s-~~~a-------------~~a~~~g~-- 131 (332)
....+.+.|++++.++ |+. ..++ ++.+.+.|+.++..++. .++- +.++ .+.
T Consensus 79 S~~mL~d~G~~~ViiGHSERR~~f~E-td~~v~~Kv~~Al~~GL~pI~CvGEtleere~g~t~~vv~~Ql~~~l-~~~~~ 156 (250)
T 2j27_A 79 SLPILKDFGVNWIVLGHSERRAYYGE-TNEIVADKVAAAVASGFMVIACIGETLQERESGRTAVVVLTQIAAIA-KKLKK 156 (250)
T ss_dssp BHHHHHHTTCCEEEESCHHHHHHSCC-CHHHHHHHHHHHHHHTCEEEEEECCCHHHHHTTCHHHHHHHHHHHHH-HTCCG
T ss_pred CHHHHHHcCCCEEEECchhhhcccCC-CHHHHHHHHHHHHHCCCEEEEEeCCCHHHhhcccHHHHHHHHHHHHH-hcCCH
Confidence 4567888999999985 454 3332 33455679998888873 3322 1122 222
Q ss_pred ----CEEEE-ecCCCCcccCCCCch-------hhhHHHHHHH-hC---CCCCcEEeecCcCCHHHHHHHH-HcCcceeee
Q 020013 132 ----DAIIV-QGREAGGHVIGQDGL-------ISLLPMVVDL-IG---DRDIPIIAAGGIVDARGYVAAL-SLGAQGICL 194 (332)
Q Consensus 132 ----D~ivv-~G~eaGGh~~~~~~~-------~~ll~~i~~~-~~---~~~iPviaaGGI~~~~~v~~al-~~GA~gV~~ 194 (332)
..+++ +..-+=|. |...+ ...+++.... +. ..+++|+..|+| +++|+.+++ ..+.||+.+
T Consensus 157 ~~~~~~vIAYEPvWAIGT--G~~Atpe~a~evh~~IR~~l~~~~~~~~a~~vrIlYGGSV-~~~N~~~l~~~~diDG~LV 233 (250)
T 2j27_A 157 ADWAKVVIAYEAVWAIGT--GKVATPQQAQEAHALIRSWVSSKIGADVAGELRILYGGSV-NGKNARTLYQQRDVNGFLV 233 (250)
T ss_dssp GGGGGEEEEEECGGGTTS--SCCCCHHHHHHHHHHHHHHHHHHTCHHHHHHCCEEEESSC-CTTTHHHHHTSTTCCEEEE
T ss_pred HHhCCEEEEECCHHHhCC--CCCCCHHHHHHHHHHHHHHHHHhcChhhcccccEEEcCCC-CHHHHHHHHcCCCCCeeee
Confidence 34444 54444443 22222 2233332111 10 014899999999 788999999 579999999
Q ss_pred cccccc
Q 020013 195 GTRFVA 200 (332)
Q Consensus 195 GT~fl~ 200 (332)
|++-+.
T Consensus 234 GgAsL~ 239 (250)
T 2j27_A 234 GGASLK 239 (250)
T ss_dssp SGGGGS
T ss_pred ehHHHH
Confidence 999876
|
| >3eoo_A Methylisocitrate lyase; seattle structural genomics center for infectious disease, ssgcid; 2.90A {Burkholderia pseudomallei 1655} SCOP: c.1.12.7 | Back alignment and structure |
|---|
Probab=94.27 E-value=2.6 Score=37.93 Aligned_cols=168 Identities=12% Similarity=0.071 Sum_probs=102.4
Q ss_pred CCCcHHHHHHHHhCCCceee-----------cCC--CCCCHHHHHHHHHHHHhhcCCcEEEEeecCCCC----HHHHHHH
Q 020013 21 DISGPELVAAVANAGGLGLL-----------RAP--DWEAPDYLRDLIRKTRSLTERPFGVGVVLAFPH----NENIKAI 83 (332)
Q Consensus 21 g~s~~~la~avs~aGglG~i-----------~~~--~~~~~e~~~~~i~~~r~~~~~p~gvnl~~~~~~----~~~~~~~ 83 (332)
+.-++-.+..+.++|.=.+. +.+ ...+.+++...++.+...++.|+-+.+-.-... .+.++.+
T Consensus 28 ~a~D~~sA~l~e~aGf~ai~vs~~s~a~~~~G~pD~~~vt~~em~~~~~~I~r~~~~PviaD~d~Gyg~~~~v~~~v~~l 107 (298)
T 3eoo_A 28 GAITAYAAKMAEAVGFKAVYLSGGGVAANSLGIPDLGISTMDDVLVDANRITNATNLPLLVDIDTGWGGAFNIARTIRSF 107 (298)
T ss_dssp ECSSHHHHHHHHHHTCSCEEECHHHHHHHTTCCCSSSCCCHHHHHHHHHHHHHHCCSCEEEECTTCSSSHHHHHHHHHHH
T ss_pred cCCCHHHHHHHHHcCCCEEEECcHHHHHHhcCCCCCCCCCHHHHHHHHHHHHhhcCCeEEEECCCCCCCHHHHHHHHHHH
Confidence 46677777777777621111 111 124567777777777666777876654322111 2345667
Q ss_pred HhcCCcEEEEccCC--------------CcHHHHHHHHh-------CCCEEEEecCCH---------HHHHHHHHcCCCE
Q 020013 84 LSEKVAVLQVSWGE--------------YSEELVLEAHS-------AGVKVVPQVGSF---------DEARKAVNAGVDA 133 (332)
Q Consensus 84 ~~~~~~~I~~~~g~--------------~~~~~i~~~~~-------~g~~v~~~v~s~---------~~a~~a~~~g~D~ 133 (332)
.+.|+..|.+--+. +..+.+++++. .+..|+.-..+. +.++...++|+|.
T Consensus 108 ~~aGaagv~iEDq~~~k~cGh~~gk~l~~~~e~~~ri~Aa~~A~~~~~~~I~ARTDa~~~~gldeai~Ra~ay~~AGAD~ 187 (298)
T 3eoo_A 108 IKAGVGAVHLEDQVGQKRCGHRPGKECVPAGEMVDRIKAAVDARTDETFVIMARTDAAAAEGIDAAIERAIAYVEAGADM 187 (298)
T ss_dssp HHTTCSEEEEECBCCCCCTTCCCCCCBCCHHHHHHHHHHHHHHCSSTTSEEEEEECTHHHHHHHHHHHHHHHHHHTTCSE
T ss_pred HHhCCeEEEECCCCCCcccCCCCCCeecCHHHHHHHHHHHHHhccCCCeEEEEeehhhhhcCHHHHHHHHHhhHhcCCCE
Confidence 78899999863111 23456666642 245666554432 3344567899999
Q ss_pred EEEecCCCCcccCCCCchhhhHHHHHHHhCCCCCcEEe---ecCcCCHHHHHHHHHcCcceeeeccccccC
Q 020013 134 IIVQGREAGGHVIGQDGLISLLPMVVDLIGDRDIPIIA---AGGIVDARGYVAALSLGAQGICLGTRFVAS 201 (332)
Q Consensus 134 ivv~G~eaGGh~~~~~~~~~ll~~i~~~~~~~~iPvia---aGGI~~~~~v~~al~~GA~gV~~GT~fl~t 201 (332)
|.+.+. .+...+.++.+.+ ++|+++ .+|-...-+..+.-++|..-|..|...+.+
T Consensus 188 if~~~~----------~~~ee~~~~~~~~---~~Pl~~n~~~~g~tp~~~~~eL~~lGv~~v~~~~~~~ra 245 (298)
T 3eoo_A 188 IFPEAM----------KTLDDYRRFKEAV---KVPILANLTEFGSTPLFTLDELKGANVDIALYCCGAYRA 245 (298)
T ss_dssp EEECCC----------CSHHHHHHHHHHH---CSCBEEECCTTSSSCCCCHHHHHHTTCCEEEECSHHHHH
T ss_pred EEeCCC----------CCHHHHHHHHHHc---CCCeEEEeccCCCCCCCCHHHHHHcCCeEEEEchHHHHH
Confidence 999653 2356677888888 688765 355422235667778999999998776654
|
| >3sz8_A 2-dehydro-3-deoxyphosphooctonate aldolase 2; ssgcid, structural genomics, seattle structural genomics CEN infectious disease; 2.05A {Burkholderia pseudomallei} PDB: 3tmq_A* 3und_A* | Back alignment and structure |
|---|
Probab=94.25 E-value=1.1 Score=40.21 Aligned_cols=137 Identities=18% Similarity=0.175 Sum_probs=81.0
Q ss_pred HHHHHHHhhcCCcEEEEeecCCCCHHHHHHHHhcCCcEEEEccC-CCcHHHHHHHHhCCCEEEEecC---CHHHHHH---
Q 020013 53 DLIRKTRSLTERPFGVGVVLAFPHNENIKAILSEKVAVLQVSWG-EYSEELVLEAHSAGVKVVPQVG---SFDEARK--- 125 (332)
Q Consensus 53 ~~i~~~r~~~~~p~gvnl~~~~~~~~~~~~~~~~~~~~I~~~~g-~~~~~~i~~~~~~g~~v~~~v~---s~~~a~~--- 125 (332)
++++++++.++.|+..-++- .+.++.+.+. +|++++... ....++++.+-+.+.+|+.+-+ +++|.+.
T Consensus 81 ~~L~~~~~e~Glp~~Tev~d----~~~v~~l~~~-vd~lqIgA~~~~n~~LLr~va~~gkPVilK~G~~~t~~ei~~ave 155 (285)
T 3sz8_A 81 KIFAEVKARFGVPVITDVHE----AEQAAPVAEI-ADVLQVPAFLARQTDLVVAIAKAGKPVNVKKPQFMSPTQLKHVVS 155 (285)
T ss_dssp HHHHHHHHHHCCCEEEECCS----GGGHHHHHTT-CSEEEECGGGTTCHHHHHHHHHTSSCEEEECCTTSCGGGTHHHHH
T ss_pred HHHHHHHHhcCCeEEEEeCC----HHHHHHHHHh-CCEEEECccccCCHHHHHHHHccCCcEEEeCCCCCCHHHHHHHHH
Confidence 34555555566777655443 5667777777 999999743 2344677777778999887643 5544433
Q ss_pred -HHHcCCC-EEEEe-cCCCCcccCCCCchhhhHHHHHHHhCCCCCcEEee-----------cCcCCH------HHHHHHH
Q 020013 126 -AVNAGVD-AIIVQ-GREAGGHVIGQDGLISLLPMVVDLIGDRDIPIIAA-----------GGIVDA------RGYVAAL 185 (332)
Q Consensus 126 -a~~~g~D-~ivv~-G~eaGGh~~~~~~~~~ll~~i~~~~~~~~iPviaa-----------GGI~~~------~~v~~al 185 (332)
..+.|.+ .++++ |... +.. .....+..++.+++... ++||+.. ||.+.+ .-..++.
T Consensus 156 ~i~~~Gn~~i~L~erg~~y-~~~-~~~vdl~~i~~lk~~~~--~~pV~~D~sHs~q~p~~~~~~s~G~r~~v~~~a~AAv 231 (285)
T 3sz8_A 156 KCGEVGNDRVMLCERGSSF-GYD-NLVVDMLGFRQMAETTG--GCPVIFDVTHSLQCRDPLGDASGGRRRQVLDLARAGI 231 (285)
T ss_dssp HHHHTTCCCEEEEECCEEC-SSS-CEECCTTHHHHHHHHTT--SCCEEEETTTTCC---------------HHHHHHHHH
T ss_pred HHHHcCCCcEEEEeCCCCC-CCC-cCccCHHHHHHHHHhCC--CCCEEEeCCCccccCCCcCCCCCCchhhHHHHHHHHH
Confidence 3456765 44443 3322 111 11134777888887652 3899883 222122 2345788
Q ss_pred HcCcceeeecccc
Q 020013 186 SLGAQGICLGTRF 198 (332)
Q Consensus 186 ~~GA~gV~~GT~f 198 (332)
++||||+++=+.|
T Consensus 232 A~GA~gl~IE~H~ 244 (285)
T 3sz8_A 232 AVGIAGLFLEAHP 244 (285)
T ss_dssp HHCCSEEEEEEES
T ss_pred HhCCCEEEEEecc
Confidence 8999999985443
|
| >3sr7_A Isopentenyl-diphosphate delta-isomerase; isopentenyl pyrophosphate isomerase, TIM-barrel; 2.04A {Streptococcus mutans} | Back alignment and structure |
|---|
Probab=94.24 E-value=0.4 Score=44.66 Aligned_cols=89 Identities=16% Similarity=0.146 Sum_probs=62.0
Q ss_pred HHHHHHHHHHHHhhcCCcEEEEeecCCCCHHHHHHHHhcCCcEEEEcc-----------------------CCCcHHHHH
Q 020013 48 PDYLRDLIRKTRSLTERPFGVGVVLAFPHNENIKAILSEKVAVLQVSW-----------------------GEYSEELVL 104 (332)
Q Consensus 48 ~e~~~~~i~~~r~~~~~p~gvnl~~~~~~~~~~~~~~~~~~~~I~~~~-----------------------g~~~~~~i~ 104 (332)
.+.+.+.++++++.++.|+.+..+.+....+..+.+.+.|+|+|.++. |.+....+.
T Consensus 191 ~~~~~~~I~~l~~~~~~PVivK~vg~g~s~e~A~~l~~aGad~I~V~g~GGt~~a~ie~~r~~~~~~~~~~g~pt~~~L~ 270 (365)
T 3sr7_A 191 FRSWKKHLSDYAKKLQLPFILKEVGFGMDVKTIQTAIDLGVKTVDISGRGGTSFAYIENRRGGNRSYLNQWGQTTAQVLL 270 (365)
T ss_dssp CHHHHHHHHHHHHHCCSCEEEEECSSCCCHHHHHHHHHHTCCEEECCCBC--------------CGGGTTCSCBHHHHHH
T ss_pred HHHHHHHHHHHHHhhCCCEEEEECCCCCCHHHHHHHHHcCCCEEEEeCCCCcccchhhccccccccccccccccHHHHHH
Confidence 344567788888888999999854322235677888999999998731 111112233
Q ss_pred HHHhC--CCEEEEe--cCCHHHHHHHHHcCCCEEEE
Q 020013 105 EAHSA--GVKVVPQ--VGSFDEARKAVNAGVDAIIV 136 (332)
Q Consensus 105 ~~~~~--g~~v~~~--v~s~~~a~~a~~~g~D~ivv 136 (332)
.++.. .++|+.. +.+..++.+++..|||+|.+
T Consensus 271 ~v~~~~~~ipvia~GGI~~g~Dv~KaLalGAdaV~i 306 (365)
T 3sr7_A 271 NAQPLMDKVEILASGGIRHPLDIIKALVLGAKAVGL 306 (365)
T ss_dssp HHGGGTTTSEEEECSSCCSHHHHHHHHHHTCSEEEE
T ss_pred HHHHhcCCCeEEEeCCCCCHHHHHHHHHcCCCEEEE
Confidence 33332 5778754 77999999999999999988
|
| >1mo0_A TIM, triosephosphate isomerase; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics; 1.70A {Caenorhabditis elegans} SCOP: c.1.1.1 | Back alignment and structure |
|---|
Probab=94.22 E-value=0.18 Score=44.91 Aligned_cols=128 Identities=20% Similarity=0.176 Sum_probs=76.1
Q ss_pred HHHHHHhcCCcEEEEc-------cCCCcHH----HHHHHHhCCCEEEEecCCHHHHHH--------------HHHcC---
Q 020013 79 NIKAILSEKVAVLQVS-------WGEYSEE----LVLEAHSAGVKVVPQVGSFDEARK--------------AVNAG--- 130 (332)
Q Consensus 79 ~~~~~~~~~~~~I~~~-------~g~~~~~----~i~~~~~~g~~v~~~v~s~~~a~~--------------a~~~g--- 130 (332)
..+.+.+.|++.+.++ |+. ..+ -++.+.+.|+.++..++...+.+. .+ .+
T Consensus 98 S~~mLkd~G~~~ViiGHSERR~~f~E-tde~V~~Kv~~Al~~GL~pI~CvGEtleeReag~t~~vv~~Ql~~~l-~~~~~ 175 (275)
T 1mo0_A 98 SPAMIKDLGLEWVILGHSERRHVFGE-SDALIAEKTVHALEAGIKVVFCIGEKLEEREAGHTKDVNFRQLQAIV-DKGVS 175 (275)
T ss_dssp CHHHHHHTTCCEEEESCHHHHHTSCC-CHHHHHHHHHHHHHTTCEEEEEECCCHHHHHTTCHHHHHHHHHHHHH-TTTCC
T ss_pred CHHHHHHcCCCEEEeCchhhhcccCC-CHHHHHHHHHHHHHCCCEEEEEcCCcHHHHhCCChHHHHHHHHHHHH-hhhhh
Confidence 4567888999999985 454 333 234456789999888873322211 12 22
Q ss_pred -CCEEEE-ecCCCCcccCCCCch-------hhhHHHHHH-HhC---CCCCcEEeecCcCCHHHHHHHHH-cCcceeeecc
Q 020013 131 -VDAIIV-QGREAGGHVIGQDGL-------ISLLPMVVD-LIG---DRDIPIIAAGGIVDARGYVAALS-LGAQGICLGT 196 (332)
Q Consensus 131 -~D~ivv-~G~eaGGh~~~~~~~-------~~ll~~i~~-~~~---~~~iPviaaGGI~~~~~v~~al~-~GA~gV~~GT 196 (332)
...||+ +..-+=|. |...+ ...|++... .+. ..+++|+-.|+| +++|+.+.+. .+.||+.+|+
T Consensus 176 ~~~vvIAYEPvWAIGT--GktAtpe~aqevh~~IR~~l~~~~~~~~a~~vrILYGGSV-~~~N~~el~~~~diDG~LVGg 252 (275)
T 1mo0_A 176 WENIVIAYEPVWAIGT--GKTASGEQAQEVHEWIRAFLKEKVSPAVADATRIIYGGSV-TADNAAELGKKPDIDGFLVGG 252 (275)
T ss_dssp STTEEEEECCGGGTTT--SCCCCHHHHHHHHHHHHHHHHHHTCHHHHHHSCEEEESSC-CTTTHHHHTTSTTCCEEEESG
T ss_pred hcCEEEEECCHHHhCC--CCCCCHHHHHHHHHHHHHHHHHhhChhhcCcccEEEcCCC-CHhhHHHHhcCCCCCeeEech
Confidence 134444 44444443 22222 222332111 110 014899999999 8899988876 6899999999
Q ss_pred ccccCccCCCCHHHHHHHhcC
Q 020013 197 RFVASEESYAHPEYKRKLVEM 217 (332)
Q Consensus 197 ~fl~t~Es~~~~~~k~~~~~~ 217 (332)
+-+.. +.|.+.+..+
T Consensus 253 ASLka------~~F~~Ii~~~ 267 (275)
T 1mo0_A 253 ASLKP------DFVKIINARS 267 (275)
T ss_dssp GGGST------HHHHHHHHHS
T ss_pred HHhCh------HHHHHHHHhh
Confidence 97754 4566665443
|
| >1vqt_A Orotidine 5'-phosphate decarboxylase; TM0332, structural GEN joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.00A {Thermotoga maritima} SCOP: c.1.2.3 | Back alignment and structure |
|---|
Probab=94.15 E-value=0.067 Score=46.06 Aligned_cols=103 Identities=22% Similarity=0.130 Sum_probs=61.1
Q ss_pred HHHHHHHhcCCcEEEEccCCCcHHHHHHHHhC-CCE-EEEec-CCH-----H----HHHHHHHcCCCEEEEecCCCCccc
Q 020013 78 ENIKAILSEKVAVLQVSWGEYSEELVLEAHSA-GVK-VVPQV-GSF-----D----EARKAVNAGVDAIIVQGREAGGHV 145 (332)
Q Consensus 78 ~~~~~~~~~~~~~I~~~~g~~~~~~i~~~~~~-g~~-v~~~v-~s~-----~----~a~~a~~~g~D~ivv~G~eaGGh~ 145 (332)
..++.+.+.|+|+|.+|.-. ..+.++.+.+. ..+ +...+ ++. + .++. .+.|+| ++..+
T Consensus 76 ~~v~~~~~~GaD~vTvh~~~-G~~~l~~~~~~~~~~~~~V~~lts~~~~l~~~v~~~a~~-~e~G~d-vV~~~------- 145 (213)
T 1vqt_A 76 RSIKSWDHPAIIGFTVHSCA-GYESVERALSATDKHVFVVVKLTSMEGSLEDYMDRIEKL-NKLGCD-FVLPG------- 145 (213)
T ss_dssp HHHHHHCCTTEEEEEEEGGG-CHHHHHHHHHHCSSEEEEECCCTTSCCCHHHHHHHHHHH-HHHTCE-EECCH-------
T ss_pred HHHHHHHHCCCCEEEEeccC-CHHHHHHHHHhcCCCeEEEEEeCCCCHHHHHHHHHHHHH-hcCCCE-EEEcH-------
Confidence 34566778899999998321 23445444432 222 22222 221 2 3455 778999 54411
Q ss_pred CCCCchhhhHHHHHHHhCCCCCcEEeecCcCCHHH----------HHHHHHcCcceeeeccccccCcc
Q 020013 146 IGQDGLISLLPMVVDLIGDRDIPIIAAGGIVDARG----------YVAALSLGAQGICLGTRFVASEE 203 (332)
Q Consensus 146 ~~~~~~~~ll~~i~~~~~~~~iPviaaGGI~~~~~----------v~~al~~GA~gV~~GT~fl~t~E 203 (332)
.-+..+++.. +.| +..+||+ +++ ..+ +..|||.+++|+.+..++.
T Consensus 146 -------~~~~~ir~~~---~~~-~v~pGI~-~~~~~~dq~rv~t~~~-i~aGad~iVvGR~I~~a~d 200 (213)
T 1vqt_A 146 -------PWAKALREKI---KGK-ILVPGIR-MEVKADDQKDVVTLEE-MKGIANFAVLGREIYLSEN 200 (213)
T ss_dssp -------HHHHHHTTTC---CSC-EEECCBC----------CCBCHHH-HTTTCSEEEESHHHHTSSC
T ss_pred -------HHHHHHHHHC---CCC-EEECCCC-CCCCccchhhcCCHHH-HHCCCCEEEEChhhcCCCC
Confidence 2334455544 346 8889994 454 578 9999999999999987654
|
| >3flu_A DHDPS, dihydrodipicolinate synthase; TIM barrel, beta-alpha-barrel, amino-acid biosynthesis, diaminopimelate biosynthesis; 2.00A {Neisseria meningitidis serogroup B} SCOP: c.1.10.0 | Back alignment and structure |
|---|
Probab=94.14 E-value=0.13 Score=46.63 Aligned_cols=79 Identities=18% Similarity=0.254 Sum_probs=50.0
Q ss_pred HHHHHHHcCCCEEEEecCCCCcccCCCCchhhhHHHHHHHhCCCCCcEEeecCcCCHHHHH----HHHHcCcceeeeccc
Q 020013 122 EARKAVNAGVDAIIVQGREAGGHVIGQDGLISLLPMVVDLIGDRDIPIIAAGGIVDARGYV----AALSLGAQGICLGTR 197 (332)
Q Consensus 122 ~a~~a~~~g~D~ivv~G~eaGGh~~~~~~~~~ll~~i~~~~~~~~iPviaaGGI~~~~~v~----~al~~GA~gV~~GT~ 197 (332)
.++...+.|+|+|++-|..+-++......-..++..+++...+ ++|||+.=|=.+-++.. .+-++|||++++-+.
T Consensus 33 lv~~li~~Gv~gl~~~GttGE~~~Ls~~Er~~v~~~~~~~~~g-rvpviaGvg~~~t~~ai~la~~a~~~Gadavlv~~P 111 (297)
T 3flu_A 33 LIDWHIENGTDGIVAVGTTGESATLSVEEHTAVIEAVVKHVAK-RVPVIAGTGANNTVEAIALSQAAEKAGADYTLSVVP 111 (297)
T ss_dssp HHHHHHHTTCCEEEESSTTTTGGGSCHHHHHHHHHHHHHHHTT-SSCEEEECCCSSHHHHHHHHHHHHHTTCSEEEEECC
T ss_pred HHHHHHHcCCCEEEeCccccCcccCCHHHHHHHHHHHHHHhCC-CCcEEEeCCCcCHHHHHHHHHHHHHcCCCEEEECCC
Confidence 3445678899999997764444332222234566666666643 68988754432444433 344589999999998
Q ss_pred cccC
Q 020013 198 FVAS 201 (332)
Q Consensus 198 fl~t 201 (332)
+...
T Consensus 112 ~y~~ 115 (297)
T 3flu_A 112 YYNK 115 (297)
T ss_dssp CSSC
T ss_pred CCCC
Confidence 8764
|
| >1r2r_A TIM, triosephosphate isomerase; closed loop conformation in the ligand-free state, conformational heterogeneity, TIM-barrel; 1.50A {Oryctolagus cuniculus} SCOP: c.1.1.1 PDB: 1r2s_A 1r2t_A 2jk2_A 1wyi_A 1hti_A 2vom_A 1tph_1* 8tim_A 1sw3_A 1spq_A 1tpb_1* 1tpw_A* 1sw7_A 1tpu_A* 1tpc_1* 1ssd_A 1ssg_A 1sw0_A 1sq7_A 1tpv_A* ... | Back alignment and structure |
|---|
Probab=94.14 E-value=0.22 Score=43.78 Aligned_cols=118 Identities=19% Similarity=0.222 Sum_probs=70.7
Q ss_pred HHHHHHhcCCcEEEEc-------cCCCcHH----HHHHHHhCCCEEEEecCCHHHHHH--------------HHHcCC--
Q 020013 79 NIKAILSEKVAVLQVS-------WGEYSEE----LVLEAHSAGVKVVPQVGSFDEARK--------------AVNAGV-- 131 (332)
Q Consensus 79 ~~~~~~~~~~~~I~~~-------~g~~~~~----~i~~~~~~g~~v~~~v~s~~~a~~--------------a~~~g~-- 131 (332)
....+.+.|++++.++ |+. ..+ -++.+.+.|+.++..++...+.+. .+ .+.
T Consensus 79 S~~mL~d~G~~~ViiGHSERR~~f~E-td~~v~~Kv~~Al~~GL~pI~CvGEtleere~g~t~~vv~~Ql~~~l-~~~~~ 156 (248)
T 1r2r_A 79 SPGMIKDCGATWVVLGHSERRHVFGE-SDELIGQKVAHALSEGLGVIACIGEKLDEREAGITEKVVFEQTKVIA-DNVKD 156 (248)
T ss_dssp CHHHHHHTTCCEEEESCHHHHHTSCC-CHHHHHHHHHHHHHTTCEEEEEECCCHHHHHTTCHHHHHHHHHHHHH-HTCSC
T ss_pred CHHHHHHcCCCEEEECChhhhcccCC-CHHHHHHHHHHHHHCCCEEEEEcCCcHHHHhCCChHHHHHHHHHHHH-hhhhh
Confidence 4567888999999985 454 333 234456789998888874322222 12 122
Q ss_pred --CEEEE-ecCCCCcccCCCCch-------hhhHHHHHH-HhC---CCCCcEEeecCcCCHHHHHHHHH-cCcceeeecc
Q 020013 132 --DAIIV-QGREAGGHVIGQDGL-------ISLLPMVVD-LIG---DRDIPIIAAGGIVDARGYVAALS-LGAQGICLGT 196 (332)
Q Consensus 132 --D~ivv-~G~eaGGh~~~~~~~-------~~ll~~i~~-~~~---~~~iPviaaGGI~~~~~v~~al~-~GA~gV~~GT 196 (332)
..+++ +..-+=|. |...+ ...+++... .+. ..+++|+..|+| +++|+.+.+. .+.||+.+|+
T Consensus 157 ~~~~vIAYEPvWAIGT--G~~Atpe~a~evh~~IR~~l~~~~~~~~a~~vrIlYGGSV-~~~N~~~l~~~~diDG~LVGg 233 (248)
T 1r2r_A 157 WSKVVLAYEPVWAIGT--GKTATPQQAQEVHEKLRGWLKSNVSDAVAQSTRIIYGGSV-TGATCKELASQPDVDGFLVGG 233 (248)
T ss_dssp GGGEEEEECCGGGSSS--SCCCCHHHHHHHHHHHHHHHHHHTCHHHHHHCCEEECSCC-CTTTHHHHHTSTTCCEEEESG
T ss_pred hhceEEEEecHHhhCC--CCCCCHHHHHHHHHHHHHHHHHhcChhhcccccEEEcCCc-CHhHHHHHHcCCCCCeeEech
Confidence 34444 44444443 22222 222332211 110 014899999999 8899988886 6899999999
Q ss_pred ccccC
Q 020013 197 RFVAS 201 (332)
Q Consensus 197 ~fl~t 201 (332)
+-+..
T Consensus 234 AsL~a 238 (248)
T 1r2r_A 234 ASLKP 238 (248)
T ss_dssp GGGST
T ss_pred HHhCh
Confidence 97754
|
| >2e6f_A Dihydroorotate dehydrogenase; chagas disease, pyrimidine biosynthesis, fumarate reductase, energy metabolism, redox homeostasis, flavoprotein; HET: FMN OXC; 1.26A {Trypanosoma cruzi} PDB: 2e6a_A* 2e6d_A* 2e68_A* 2djl_A* 2djx_A* 3c3n_A* 2b4g_A* 3c61_A* 3mhu_A* 3mjy_A* | Back alignment and structure |
|---|
Probab=94.05 E-value=0.28 Score=44.43 Aligned_cols=90 Identities=17% Similarity=0.053 Sum_probs=64.4
Q ss_pred CHHHHHHHHHHHHhhcCCcEEEEeecCCCCHH---HHHHHHhcC-CcEEEEccCC-------------------------
Q 020013 47 APDYLRDLIRKTRSLTERPFGVGVVLAFPHNE---NIKAILSEK-VAVLQVSWGE------------------------- 97 (332)
Q Consensus 47 ~~e~~~~~i~~~r~~~~~p~gvnl~~~~~~~~---~~~~~~~~~-~~~I~~~~g~------------------------- 97 (332)
+++.+.+.++.+|+.++.|+.+.+-.....++ ..+.+.+.| +|+|.++...
T Consensus 144 ~~~~~~~ii~~vr~~~~~Pv~vK~~~~~~~~~~~~~a~~~~~aG~~d~i~v~~~~~~~~~i~~~~~~~~~~~~~~~gG~s 223 (314)
T 2e6f_A 144 DFEAMRTYLQQVSLAYGLPFGVKMPPYFDIAHFDTAAAVLNEFPLVKFVTCVNSVGNGLVIDAESESVVIKPKQGFGGLG 223 (314)
T ss_dssp SHHHHHHHHHHHHHHHCSCEEEEECCCCCHHHHHHHHHHHHTCTTEEEEEECCCEEEEECEETTTTEESCCGGGGEEEEE
T ss_pred CHHHHHHHHHHHHHhcCCCEEEEECCCCCHHHHHHHHHHHHhcCCceEEEEeCCCCccccccCCCCCcccccCcCCCccC
Confidence 67788889999998878899887654432122 256667889 9999765210
Q ss_pred -C---c--HHHHHHHHhC--CCEEEE--ecCCHHHHHHHHHcCCCEEEE
Q 020013 98 -Y---S--EELVLEAHSA--GVKVVP--QVGSFDEARKAVNAGVDAIIV 136 (332)
Q Consensus 98 -~---~--~~~i~~~~~~--g~~v~~--~v~s~~~a~~a~~~g~D~ivv 136 (332)
. | .++++.+++. .++|+. .+.+.+++.+++..|||.|.+
T Consensus 224 g~~~~p~~~~~i~~v~~~~~~ipvi~~GGI~~~~da~~~l~~GAd~V~i 272 (314)
T 2e6f_A 224 GKYILPTALANVNAFYRRCPDKLVFGCGGVYSGEDAFLHILAGASMVQV 272 (314)
T ss_dssp SGGGHHHHHHHHHHHHHHCTTSEEEEESSCCSHHHHHHHHHHTCSSEEE
T ss_pred cccccHHHHHHHHHHHHhcCCCCEEEECCCCCHHHHHHHHHcCCCEEEE
Confidence 0 0 2456666553 688875 477999999999999999987
|
| >3gl9_A Response regulator; beta-sheet, surrounded by alpha helices, BOTH sides, signaling protein; HET: BFD; 1.80A {Thermotoga maritima} SCOP: c.23.1.0 PDB: 3dgf_C 3dge_C | Back alignment and structure |
|---|
Probab=94.04 E-value=0.76 Score=34.54 Aligned_cols=84 Identities=18% Similarity=0.133 Sum_probs=59.1
Q ss_pred HHHHhCCCEEEEecCCHHHHHHHHH-cCCCEEEEecCCCCcccCCCCchhhhHHHHHHHhCCCCCcEEeecCcCCHHHHH
Q 020013 104 LEAHSAGVKVVPQVGSFDEARKAVN-AGVDAIIVQGREAGGHVIGQDGLISLLPMVVDLIGDRDIPIIAAGGIVDARGYV 182 (332)
Q Consensus 104 ~~~~~~g~~v~~~v~s~~~a~~a~~-~g~D~ivv~G~eaGGh~~~~~~~~~ll~~i~~~~~~~~iPviaaGGI~~~~~v~ 182 (332)
..++..|..+. .+.+.+++....+ ..+|.|++.-.- .....+.++.++++.....++|||.-.+-.+.+...
T Consensus 20 ~~l~~~g~~v~-~~~~~~~al~~l~~~~~dlvllD~~~------p~~~g~~~~~~l~~~~~~~~~pii~~s~~~~~~~~~ 92 (122)
T 3gl9_A 20 FNLKKEGYEVI-EAENGQIALEKLSEFTPDLIVLXIMM------PVMDGFTVLKKLQEKEEWKRIPVIVLTAKGGEEDES 92 (122)
T ss_dssp HHHHHTTCEEE-EESSHHHHHHHHTTBCCSEEEECSCC------SSSCHHHHHHHHHTSTTTTTSCEEEEESCCSHHHHH
T ss_pred HHHHHCCcEEE-EeCCHHHHHHHHHhcCCCEEEEeccC------CCCcHHHHHHHHHhcccccCCCEEEEecCCchHHHH
Confidence 34566788776 6788888876654 579999984321 112346777777654211268999888888899999
Q ss_pred HHHHcCcceeee
Q 020013 183 AALSLGAQGICL 194 (332)
Q Consensus 183 ~al~~GA~gV~~ 194 (332)
.++.+||+++..
T Consensus 93 ~~~~~Ga~~~l~ 104 (122)
T 3gl9_A 93 LALSLGARKVMR 104 (122)
T ss_dssp HHHHTTCSEEEE
T ss_pred HHHhcChhhhcc
Confidence 999999998753
|
| >1ydn_A Hydroxymethylglutaryl-COA lyase; TIM-barrel protein, structural genomics, PSI, protein struct initiative; 2.30A {Brucella melitensis} | Back alignment and structure |
|---|
Probab=94.04 E-value=0.82 Score=41.03 Aligned_cols=133 Identities=12% Similarity=0.104 Sum_probs=82.4
Q ss_pred HHHHHHHHhhcCCcEEEEeecCCCCHHHHHHHHhcCCcEEEEcc-----------CCCcH-------HHHHHHHhCCCEE
Q 020013 52 RDLIRKTRSLTERPFGVGVVLAFPHNENIKAILSEKVAVLQVSW-----------GEYSE-------ELVLEAHSAGVKV 113 (332)
Q Consensus 52 ~~~i~~~r~~~~~p~gvnl~~~~~~~~~~~~~~~~~~~~I~~~~-----------g~~~~-------~~i~~~~~~g~~v 113 (332)
.+.++.+++..+.++.+- . +..+.++.+.+.+++.|.+.. +.... +.++.+++.|+.|
T Consensus 61 ~e~~~~i~~~~~~~v~~l--~--~n~~~i~~a~~~G~~~V~i~~~~S~~h~~~~~~~~~~e~~~~~~~~v~~a~~~G~~V 136 (295)
T 1ydn_A 61 REVMAGIRRADGVRYSVL--V--PNMKGYEAAAAAHADEIAVFISASEGFSKANINCTIAESIERLSPVIGAAINDGLAI 136 (295)
T ss_dssp HHHHHHSCCCSSSEEEEE--C--SSHHHHHHHHHTTCSEEEEEEESCHHHHHHHTSSCHHHHHHHHHHHHHHHHHTTCEE
T ss_pred HHHHHHHHhCCCCEEEEE--e--CCHHHHHHHHHCCCCEEEEEEecCHHHHHHHcCCCHHHHHHHHHHHHHHHHHcCCeE
Confidence 344555544333444432 2 346778889999999987753 11222 2356667889987
Q ss_pred EEe-----------cCCHHHHHH----HHHcCCCEEEEecCCCCcccCCCCchhhhHHHHHHHhCCCCCcEEeec----C
Q 020013 114 VPQ-----------VGSFDEARK----AVNAGVDAIIVQGREAGGHVIGQDGLISLLPMVVDLIGDRDIPIIAAG----G 174 (332)
Q Consensus 114 ~~~-----------v~s~~~a~~----a~~~g~D~ivv~G~eaGGh~~~~~~~~~ll~~i~~~~~~~~iPviaaG----G 174 (332)
-.. ..+++++.. +.+.|+|.|.+.-. -|.. .+.....++..+++.++ ++|+..-+ |
T Consensus 137 ~~~l~~~~~~e~~~~~~~~~~~~~~~~~~~~G~d~i~l~Dt--~G~~-~P~~~~~lv~~l~~~~~--~~~l~~H~Hn~~G 211 (295)
T 1ydn_A 137 RGYVSCVVECPYDGPVTPQAVASVTEQLFSLGCHEVSLGDT--IGRG-TPDTVAAMLDAVLAIAP--AHSLAGHYHDTGG 211 (295)
T ss_dssp EEEEECSSEETTTEECCHHHHHHHHHHHHHHTCSEEEEEET--TSCC-CHHHHHHHHHHHHTTSC--GGGEEEEEBCTTS
T ss_pred EEEEEEEecCCcCCCCCHHHHHHHHHHHHhcCCCEEEecCC--CCCc-CHHHHHHHHHHHHHhCC--CCeEEEEECCCcc
Confidence 521 236665543 45789999988532 2221 23345777777777662 37777654 6
Q ss_pred cCCHHHHHHHHHcCcceeee
Q 020013 175 IVDARGYVAALSLGAQGICL 194 (332)
Q Consensus 175 I~~~~~v~~al~~GA~gV~~ 194 (332)
++ -.+..+++.+|++-|..
T Consensus 212 la-~an~l~Ai~aG~~~vd~ 230 (295)
T 1ydn_A 212 RA-LDNIRVSLEKGLRVFDA 230 (295)
T ss_dssp CH-HHHHHHHHHHTCCEEEE
T ss_pred hH-HHHHHHHHHhCCCEEEe
Confidence 64 46788889999997775
|
| >2ojp_A DHDPS, dihydrodipicolinate synthase; dimer, lysine biosynthe lyase; HET: KGC GOL; 1.70A {Escherichia coli} PDB: 1yxc_A 1dhp_A 1yxd_A* 2ats_A* 3du0_A* 3c0j_A* 3ubs_A* 4eou_A* 3i7q_A* 3i7r_A* 3i7s_A* 2pur_A* 1s5v_A 1s5w_A 1s5t_A 3den_A* 2a6l_A 2a6n_A 3g0s_A | Back alignment and structure |
|---|
Probab=94.03 E-value=0.16 Score=45.78 Aligned_cols=79 Identities=22% Similarity=0.281 Sum_probs=49.2
Q ss_pred HHHHHHHcCCCEEEEecCCCCcccCCCCchhhhHHHHHHHhCCCCCcEEeecCcCCHHHHHHH----HHcCcceeeeccc
Q 020013 122 EARKAVNAGVDAIIVQGREAGGHVIGQDGLISLLPMVVDLIGDRDIPIIAAGGIVDARGYVAA----LSLGAQGICLGTR 197 (332)
Q Consensus 122 ~a~~a~~~g~D~ivv~G~eaGGh~~~~~~~~~ll~~i~~~~~~~~iPviaaGGI~~~~~v~~a----l~~GA~gV~~GT~ 197 (332)
.++...+.|+|+|++-|..+-++......-..++..+++...+ ++|||+.=|=.+-+++.+. -++|||++++-+.
T Consensus 27 lv~~li~~Gv~gl~~~GttGE~~~Ls~~Er~~v~~~~~~~~~g-r~pviaGvg~~~t~~ai~la~~a~~~Gadavlv~~P 105 (292)
T 2ojp_A 27 LIDYHVASGTSAIVSVGTTGESATLNHDEHADVVMMTLDLADG-RIPVIAGTGANATAEAISLTQRFNDSGIVGCLTVTP 105 (292)
T ss_dssp HHHHHHHHTCCEEEESSTTTTGGGSCHHHHHHHHHHHHHHHTT-SSCEEEECCCSSHHHHHHHHHHTTTSSCSEEEEECC
T ss_pred HHHHHHHcCCCEEEECccccchhhCCHHHHHHHHHHHHHHhCC-CCcEEEecCCccHHHHHHHHHHHHhcCCCEEEECCC
Confidence 3445667899999997764444332222235566666666643 6898854443344444333 2479999999998
Q ss_pred cccC
Q 020013 198 FVAS 201 (332)
Q Consensus 198 fl~t 201 (332)
+...
T Consensus 106 ~y~~ 109 (292)
T 2ojp_A 106 YYNR 109 (292)
T ss_dssp CSSC
T ss_pred CCCC
Confidence 8754
|
| >3jte_A Response regulator receiver protein; structural genomics, nysgrc, response regulator receiver DOM target 11226E, PSI-2; 1.90A {Clostridium thermocellum atcc 27405} | Back alignment and structure |
|---|
Probab=94.01 E-value=1 Score=34.61 Aligned_cols=83 Identities=16% Similarity=0.168 Sum_probs=59.5
Q ss_pred HHHHHhCCCEEEEecCCHHHHHHHHH---cCCCEEEEecCCCCcccCCCCchhhhHHHHHHHhCCCCCcEEeecCcCCHH
Q 020013 103 VLEAHSAGVKVVPQVGSFDEARKAVN---AGVDAIIVQGREAGGHVIGQDGLISLLPMVVDLIGDRDIPIIAAGGIVDAR 179 (332)
Q Consensus 103 i~~~~~~g~~v~~~v~s~~~a~~a~~---~g~D~ivv~G~eaGGh~~~~~~~~~ll~~i~~~~~~~~iPviaaGGI~~~~ 179 (332)
.+.+...|..+. .+.+.+++..... ..+|.|++.-.-. ....+.++..+++..+ ++|||+-.+-.+.+
T Consensus 20 ~~~l~~~g~~v~-~~~~~~~a~~~~~~~~~~~dlvi~d~~l~------~~~g~~~~~~l~~~~~--~~~ii~ls~~~~~~ 90 (143)
T 3jte_A 20 KFLLEIDGNEVL-TASSSTEGLRIFTENCNSIDVVITDMKMP------KLSGMDILREIKKITP--HMAVIILTGHGDLD 90 (143)
T ss_dssp HHHHHHTTCEEE-EESSHHHHHHHHHHTTTTCCEEEEESCCS------SSCHHHHHHHHHHHCT--TCEEEEEECTTCHH
T ss_pred HHHHHhCCceEE-EeCCHHHHHHHHHhCCCCCCEEEEeCCCC------CCcHHHHHHHHHHhCC--CCeEEEEECCCCHH
Confidence 344556677655 6778888876654 4799999853321 1234677888877543 68999888888889
Q ss_pred HHHHHHHcCcceeee
Q 020013 180 GYVAALSLGAQGICL 194 (332)
Q Consensus 180 ~v~~al~~GA~gV~~ 194 (332)
.+..++.+||+++..
T Consensus 91 ~~~~~~~~g~~~~l~ 105 (143)
T 3jte_A 91 NAILAMKEGAFEYLR 105 (143)
T ss_dssp HHHHHHHTTCSEEEE
T ss_pred HHHHHHHhCcceeEe
Confidence 999999999998764
|
| >1xky_A Dihydrodipicolinate synthase; TIM barrel, , lysine biosynthesis;spine, lyase; 1.94A {Bacillus anthracis} SCOP: c.1.10.1 PDB: 1xl9_A 3hij_A* | Back alignment and structure |
|---|
Probab=93.98 E-value=0.17 Score=45.86 Aligned_cols=78 Identities=19% Similarity=0.354 Sum_probs=48.9
Q ss_pred HHHHHHcCCCEEEEecCCCCcccCCCCchhhhHHHHHHHhCCCCCcEEee-cCcCCHHHH---HHHHHcCcceeeecccc
Q 020013 123 ARKAVNAGVDAIIVQGREAGGHVIGQDGLISLLPMVVDLIGDRDIPIIAA-GGIVDARGY---VAALSLGAQGICLGTRF 198 (332)
Q Consensus 123 a~~a~~~g~D~ivv~G~eaGGh~~~~~~~~~ll~~i~~~~~~~~iPviaa-GGI~~~~~v---~~al~~GA~gV~~GT~f 198 (332)
++...+.|+|+|++-|..+-++......-..++..+++...+ ++|||+. |+.++.+.+ ..+-++|||++++-+.+
T Consensus 39 v~~li~~Gv~gl~v~GtTGE~~~Ls~eEr~~v~~~~~~~~~g-rvpViaGvg~~~t~~ai~la~~A~~~Gadavlv~~P~ 117 (301)
T 1xky_A 39 VNYLIDNGTTAIVVGGTTGESPTLTSEEKVALYRHVVSVVDK-RVPVIAGTGSNNTHASIDLTKKATEVGVDAVMLVAPY 117 (301)
T ss_dssp HHHHHHTTCCEEEESSTTTTGGGSCHHHHHHHHHHHHHHHTT-SSCEEEECCCSCHHHHHHHHHHHHHTTCSEEEEECCC
T ss_pred HHHHHHcCCCEEEECccccChhhCCHHHHHHHHHHHHHHhCC-CceEEeCCCCCCHHHHHHHHHHHHhcCCCEEEEcCCC
Confidence 445668899999997764444331222234566666666643 6898854 444433333 23445899999999998
Q ss_pred ccC
Q 020013 199 VAS 201 (332)
Q Consensus 199 l~t 201 (332)
...
T Consensus 118 y~~ 120 (301)
T 1xky_A 118 YNK 120 (301)
T ss_dssp SSC
T ss_pred CCC
Confidence 754
|
| >3s1x_A Probable transaldolase; alpha-beta barrel, conformational selection, domain swapping transferase; HET: I22; 1.65A {Thermoplasma acidophilum} PDB: 3s1u_A* 3s1v_A* 3s0c_A* 3s1w_A* | Back alignment and structure |
|---|
Probab=93.96 E-value=1.2 Score=38.38 Aligned_cols=137 Identities=18% Similarity=0.175 Sum_probs=84.2
Q ss_pred HHHHHHHHhhcCCcEEEEeecCCCCHHHHH---HHHhcCCcEEE-EccCCCcHHHHHHHHhCCCEEEEe-cCCHHHHHHH
Q 020013 52 RDLIRKTRSLTERPFGVGVVLAFPHNENIK---AILSEKVAVLQ-VSWGEYSEELVLEAHSAGVKVVPQ-VGSFDEARKA 126 (332)
Q Consensus 52 ~~~i~~~r~~~~~p~gvnl~~~~~~~~~~~---~~~~~~~~~I~-~~~g~~~~~~i~~~~~~g~~v~~~-v~s~~~a~~a 126 (332)
.+.++++.+..+.|+.+-+... ..++.++ .+.+....++. +..-..--+.++.+.+.|+++-.+ +-|..++..+
T Consensus 43 ~~~~~ei~~~v~G~Vs~EV~a~-d~e~mi~eA~~L~~~~~nv~IKIP~T~eGl~A~~~L~~~GI~vn~TlifS~~QA~~A 121 (223)
T 3s1x_A 43 GDIIREILKIVDGPVSVEVVST-KYEGMVEEARKIHGLGDNAVVKIPMTEDGLRAIKTLSSEHINTNCTLVFNPIQALLA 121 (223)
T ss_dssp HHHHHHHHHHCSSCEEEECCCC-SHHHHHHHHHHHHHTCTTEEEEEESSHHHHHHHHHHHHTTCCEEEEEECSHHHHHHH
T ss_pred HHHHHHHHHhCCCCEEEEEccC-CHHHHHHHHHHHHHhCCCEEEEeCCCHHHHHHHHHHHHCCCcEEEEEeCCHHHHHHH
Confidence 3445556666677777766542 2233333 33444444432 332111125577888889998654 6799999999
Q ss_pred HHcCCCEEEE-ecC--CCCcccCCCCchhhhHHHHHHHhCCCC-CcEEeecCcCCHHHHHHHHHcCcceeeec
Q 020013 127 VNAGVDAIIV-QGR--EAGGHVIGQDGLISLLPMVVDLIGDRD-IPIIAAGGIVDARGYVAALSLGAQGICLG 195 (332)
Q Consensus 127 ~~~g~D~ivv-~G~--eaGGh~~~~~~~~~ll~~i~~~~~~~~-iPviaaGGI~~~~~v~~al~~GA~gV~~G 195 (332)
.++|+++|-. -|+ +.| + ..+.++.++.+.++..+ -..|.+..+.+..++.++..+|||.+-+.
T Consensus 122 a~AGa~yISPfvgRi~d~g-~-----dG~~~v~~i~~~~~~~~~~T~IlaAS~Rn~~~v~~aa~~G~d~~Tip 188 (223)
T 3s1x_A 122 AKAGVTYVSPFVGRLDDIG-E-----DGMQIIDMIRTIFNNYIIKTQILVASIRNPIHVLRSAVIGADVVTVP 188 (223)
T ss_dssp HHTTCSEEEEBSHHHHHTT-S-----CTHHHHHHHHHHHHHTTCCSEEEEBSCCSHHHHHHHHHHTCSEEEEC
T ss_pred HHcCCeEEEeecchHhhcC-C-----CHHHHHHHHHHHHHHcCCCCEEEEEeCCCHHHHHHHHHcCCCEEEeC
Confidence 9999999865 332 111 1 22556666665543211 23455566889999999999999988763
|
| >4a3u_A NCR, NADH\:flavin oxidoreductase/NADH oxidase; HET: FMN; 1.70A {Zymomonas mobilis} | Back alignment and structure |
|---|
Probab=93.92 E-value=0.14 Score=47.53 Aligned_cols=76 Identities=18% Similarity=0.292 Sum_probs=51.2
Q ss_pred HHHHHHcCCCEEEEecCCCCcccCCCCchhhhHHHHHHHhCCCCCcEEeecCcCCHHHHHHHHHcC-cceeeeccccccC
Q 020013 123 ARKAVNAGVDAIIVQGREAGGHVIGQDGLISLLPMVVDLIGDRDIPIIAAGGIVDARGYVAALSLG-AQGICLGTRFVAS 201 (332)
Q Consensus 123 a~~a~~~g~D~ivv~G~eaGGh~~~~~~~~~ll~~i~~~~~~~~iPviaaGGI~~~~~v~~al~~G-A~gV~~GT~fl~t 201 (332)
++...+.|+|++-+......+.. +......+.+.+++.. +.||+ .||+.+++.+.++|+-| ||.|.||..|++.
T Consensus 247 ~~~~~~~~~~~i~~~~~~~~~~~-~~~~~~~~a~~ik~~~---~~~v~-~~g~~~~~~ae~~l~~G~aD~V~~gR~~lad 321 (358)
T 4a3u_A 247 AKMLSDLDIAFLGMREGAVDGTF-GKTDQPKLSPEIRKVF---KPPLV-LNQDYTFETAQAALDSGVADAISFGRPFIGN 321 (358)
T ss_dssp HHHHHHHTCSEEEEECCBTTCSS-SBCSSCCCHHHHHHHC---CSCEE-EESSCCHHHHHHHHHHTSCSEEEESHHHHHC
T ss_pred HHhhhccCccccccccccccCcc-cccccHHHHHHHHHhc---CCcEE-EeCCCCHHHHHHHHHcCCceEeHhhHHHHhC
Confidence 34456779999987543211111 1111234556777665 56666 46667999999999998 8999999999987
Q ss_pred cc
Q 020013 202 EE 203 (332)
Q Consensus 202 ~E 203 (332)
++
T Consensus 322 Pd 323 (358)
T 4a3u_A 322 PD 323 (358)
T ss_dssp TT
T ss_pred hh
Confidence 65
|
| >1jcn_A Inosine monophosphate dehydrogenase I; IMPD, IMPDH, guanine nucleotide synthesis, oxidoreductase; HET: CPR; 2.50A {Homo sapiens} SCOP: c.1.5.1 d.37.1.1 PDB: 1jr1_A* 1nf7_A* 1b3o_A* 1nfb_A* | Back alignment and structure |
|---|
Probab=93.91 E-value=0.97 Score=43.95 Aligned_cols=109 Identities=16% Similarity=0.149 Sum_probs=72.3
Q ss_pred cHHHHHHHHhCCCceeecCCCCCCHHHHHHHHHHHHhhc-CCcEEE-EeecCCCCHHHHHHHHhcCCcEEEEcc------
Q 020013 24 GPELVAAVANAGGLGLLRAPDWEAPDYLRDLIRKTRSLT-ERPFGV-GVVLAFPHNENIKAILSEKVAVLQVSW------ 95 (332)
Q Consensus 24 ~~~la~avs~aGglG~i~~~~~~~~e~~~~~i~~~r~~~-~~p~gv-nl~~~~~~~~~~~~~~~~~~~~I~~~~------ 95 (332)
..+.+..+.++|.-.+........++...+.++++++.+ +.|+.+ ++.. .+.++.+.+.|+|+|.++.
T Consensus 256 ~~~~a~~~~~aG~d~v~i~~~~G~~~~~~~~i~~i~~~~~~~pvi~~~v~t----~~~a~~l~~aGad~I~vg~~~G~~~ 331 (514)
T 1jcn_A 256 DKYRLDLLTQAGVDVIVLDSSQGNSVYQIAMVHYIKQKYPHLQVIGGNVVT----AAQAKNLIDAGVDGLRVGMGCGSIC 331 (514)
T ss_dssp HHHHHHHHHHTTCSEEEECCSCCCSHHHHHHHHHHHHHCTTCEEEEEEECS----HHHHHHHHHHTCSEEEECSSCSCCB
T ss_pred hHHHHHHHHHcCCCEEEeeccCCcchhHHHHHHHHHHhCCCCceEecccch----HHHHHHHHHcCCCEEEECCCCCccc
Confidence 456666666777544442111223445567788888876 678776 4432 5678888899999997742
Q ss_pred --------CCCcH---HHHHHHHh-CCCEEEE--ecCCHHHHHHHHHcCCCEEEE
Q 020013 96 --------GEYSE---ELVLEAHS-AGVKVVP--QVGSFDEARKAVNAGVDAIIV 136 (332)
Q Consensus 96 --------g~~~~---~~i~~~~~-~g~~v~~--~v~s~~~a~~a~~~g~D~ivv 136 (332)
|.+.. ..+..+++ .+++|++ .+.+.+++.+++..|+|+|.+
T Consensus 332 ~t~~~~~~g~~~~~~~~~~~~~~~~~~ipVia~GGI~~~~di~kala~GAd~V~i 386 (514)
T 1jcn_A 332 ITQEVMACGRPQGTAVYKVAEYARRFGVPIIADGGIQTVGHVVKALALGASTVMM 386 (514)
T ss_dssp TTBCCCSCCCCHHHHHHHHHHHHGGGTCCEEEESCCCSHHHHHHHHHTTCSEEEE
T ss_pred ccccccCCCccchhHHHHHHHHHhhCCCCEEEECCCCCHHHHHHHHHcCCCeeeE
Confidence 21112 23333333 4788886 688999999999999999988
|
| >1zlp_A PSR132, petal death protein; TIM-barrel, helix swapping,2-ethyl-3-methylmalate lyase, 2-P methylmalate lyase, lyase/PEP mutase superfamily; 2.70A {Dianthus caryophyllus} | Back alignment and structure |
|---|
Probab=93.85 E-value=2.1 Score=38.95 Aligned_cols=167 Identities=16% Similarity=0.057 Sum_probs=102.2
Q ss_pred CCCcHHHHHHHHhCCCceee-----------cCC--CCCCHHHHHHHHHHHHhhc-CCcEEEEeecCCCC----HHHHHH
Q 020013 21 DISGPELVAAVANAGGLGLL-----------RAP--DWEAPDYLRDLIRKTRSLT-ERPFGVGVVLAFPH----NENIKA 82 (332)
Q Consensus 21 g~s~~~la~avs~aGglG~i-----------~~~--~~~~~e~~~~~i~~~r~~~-~~p~gvnl~~~~~~----~~~~~~ 82 (332)
+.-|+-.+..+.++|.=.+. +.+ ...+.+++...++.+...+ +.|+-+.+-.-... .+.+..
T Consensus 45 ~ayD~~sA~i~e~aGfdai~vs~~~~a~~~lG~pD~~~vt~~em~~~~~~I~r~~~~~PviaD~d~Gyg~~~~v~~tv~~ 124 (318)
T 1zlp_A 45 GVQDALSAAVVEKTGFHAAFVSGYSVSAAMLGLPDFGLLTTTEVVEATRRITAAAPNLCVVVDGDTGGGGPLNVQRFIRE 124 (318)
T ss_dssp EECSHHHHHHHHHTTCSEEEECHHHHHHHHHCCCSSSCSCHHHHHHHHHHHHHHSSSSEEEEECTTCSSSHHHHHHHHHH
T ss_pred cCCCHHHHHHHHHcCCCEEEECcHHHhhHhcCCCCCCCCCHHHHHHHHHHHHhhccCCCEEEeCCCCCCCHHHHHHHHHH
Confidence 46677778777777621111 111 1346677777777777666 77777654322111 234566
Q ss_pred HHhcCCcEEEEccCC--------------CcHHHHHHHH---h----CCCEEEEecCC---------HHHHHHHHHcCCC
Q 020013 83 ILSEKVAVLQVSWGE--------------YSEELVLEAH---S----AGVKVVPQVGS---------FDEARKAVNAGVD 132 (332)
Q Consensus 83 ~~~~~~~~I~~~~g~--------------~~~~~i~~~~---~----~g~~v~~~v~s---------~~~a~~a~~~g~D 132 (332)
+.+.|+..|.+--+. +..+.+++++ + .+..|..-... ++.++...++|+|
T Consensus 125 l~~aGaagv~iED~~~~k~cgH~~gk~L~p~~e~~~rI~Aa~~A~~~~~~~I~ARtda~a~~gl~~ai~Ra~Ay~eAGAd 204 (318)
T 1zlp_A 125 LISAGAKGVFLEDQVWPKKCGHMRGKAVVPAEEHALKIAAAREAIGDSDFFLVARTDARAPHGLEEGIRRANLYKEAGAD 204 (318)
T ss_dssp HHHTTCCEEEEECBCSSCCCSSSSCCCBCCHHHHHHHHHHHHHHHTTSCCEEEEEECTHHHHHHHHHHHHHHHHHHTTCS
T ss_pred HHHcCCcEEEECCCCCCccccCCCCCccCCHHHHHHHHHHHHHhcccCCcEEEEeeHHhhhcCHHHHHHHHHHHHHcCCC
Confidence 778999999873111 1124444432 2 35677765543 2344556789999
Q ss_pred EEEEecCCCCcccCCCCchhhhHHHHHHHhCCCCCcEE---eecCcCCHHHHHHHHHcCcceeeecccccc
Q 020013 133 AIIVQGREAGGHVIGQDGLISLLPMVVDLIGDRDIPII---AAGGIVDARGYVAALSLGAQGICLGTRFVA 200 (332)
Q Consensus 133 ~ivv~G~eaGGh~~~~~~~~~ll~~i~~~~~~~~iPvi---aaGGI~~~~~v~~al~~GA~gV~~GT~fl~ 200 (332)
.|++++. ++...+.++.+.+ ++|++ ..+|-...-+..+.-++|..-|..|...+.
T Consensus 205 ~i~~e~~----------~~~e~~~~i~~~l---~~P~lan~~~~g~~~~~~~~eL~~lGv~~v~~~~~~~r 262 (318)
T 1zlp_A 205 ATFVEAP----------ANVDELKEVSAKT---KGLRIANMIEGGKTPLHTPEEFKEMGFHLIAHSLTAVY 262 (318)
T ss_dssp EEEECCC----------CSHHHHHHHHHHS---CSEEEEEECTTSSSCCCCHHHHHHHTCCEEEECSHHHH
T ss_pred EEEEcCC----------CCHHHHHHHHHhc---CCCEEEEeccCCCCCCCCHHHHHHcCCeEEEEchHHHH
Confidence 9999543 2356778888888 79984 334432223466777899999999887663
|
| >2ze3_A DFA0005; organic waste LEFT-OVER decomposition, alkaliphilic, ICL/PEPM superfamily, alpha-ketoglutarate LIG isomerase; HET: AKG; 1.65A {Deinococcus ficus} | Back alignment and structure |
|---|
Probab=93.75 E-value=0.68 Score=41.34 Aligned_cols=166 Identities=14% Similarity=0.132 Sum_probs=97.4
Q ss_pred CCCcHHHHHHHHhCCC---------cee-ecCC--CCCCHHHHHHHHHHHHhhcCCcEEEEeecCCC-C----HHHHHHH
Q 020013 21 DISGPELVAAVANAGG---------LGL-LRAP--DWEAPDYLRDLIRKTRSLTERPFGVGVVLAFP-H----NENIKAI 83 (332)
Q Consensus 21 g~s~~~la~avs~aGg---------lG~-i~~~--~~~~~e~~~~~i~~~r~~~~~p~gvnl~~~~~-~----~~~~~~~ 83 (332)
+.-+.-.+..+.++|. ++. ++.+ ...+.+++...++.+...++.|+-+.+-.-.. . .+.+..+
T Consensus 22 ~a~D~~sA~~~~~aG~~ai~vsg~s~a~~~G~pD~~~vt~~em~~~~~~I~~~~~~pviaD~d~Gyg~~~~~~~~~v~~l 101 (275)
T 2ze3_A 22 NAWDVASARLLEAAGFTAIGTTSAGIAHARGRTDGQTLTRDEMGREVEAIVRAVAIPVNADIEAGYGHAPEDVRRTVEHF 101 (275)
T ss_dssp EESSHHHHHHHHHHTCSCEEECHHHHHHHSCCCSSSSSCHHHHHHHHHHHHHHCSSCEEEECTTCSSSSHHHHHHHHHHH
T ss_pred cccCHHHHHHHHHcCCCEEEECcHHHHHhCCCCCCCCCCHHHHHHHHHHHHhhcCCCEEeecCCCCCCCHHHHHHHHHHH
Confidence 4567777777777762 111 1111 13466777777777777777887776532221 1 2345667
Q ss_pred HhcCCcEEEEccCC--------CcHHHHHH---HHhC----CCEEE--EecCC------------HHH----HHHHHHcC
Q 020013 84 LSEKVAVLQVSWGE--------YSEELVLE---AHSA----GVKVV--PQVGS------------FDE----ARKAVNAG 130 (332)
Q Consensus 84 ~~~~~~~I~~~~g~--------~~~~~i~~---~~~~----g~~v~--~~v~s------------~~~----a~~a~~~g 130 (332)
.+.|+..|.+--+. +..+.+++ +++. |++++ .-... .++ ++...++|
T Consensus 102 ~~aGaagv~iED~~~~~~k~l~~~~e~~~~I~aa~~a~~~~g~~~~i~aRtda~~~~~g~~~~~~~~~ai~Ra~ay~eAG 181 (275)
T 2ze3_A 102 AALGVAGVNLEDATGLTPTELYDLDSQLRRIEAARAAIDASGVPVFLNARTDTFLKGHGATDEERLAETVRRGQAYADAG 181 (275)
T ss_dssp HHTTCSEEEEECBCSSSSSCBCCHHHHHHHHHHHHHHHHHHTSCCEEEEECCTTTTTCSSSHHHHHHHHHHHHHHHHHTT
T ss_pred HHcCCcEEEECCCcCCCCCccCCHHHHHHHHHHHHHhHhhcCCCeEEEEechhhhccccccchhhHHHHHHHHHHHHHCC
Confidence 78999999884222 12234443 3333 65543 33222 233 33456789
Q ss_pred CCEEEEecCCCCcccCCCCchhhhHHHHHHHhCCCCCcEEeecCcCCHHHHHHHHHcCcceeeecccccc
Q 020013 131 VDAIIVQGREAGGHVIGQDGLISLLPMVVDLIGDRDIPIIAAGGIVDARGYVAALSLGAQGICLGTRFVA 200 (332)
Q Consensus 131 ~D~ivv~G~eaGGh~~~~~~~~~ll~~i~~~~~~~~iPviaaGGI~~~~~v~~al~~GA~gV~~GT~fl~ 200 (332)
+|.|++++. ++...+.++.+.+ ++|+-...+= ..-++.+.-++|..-|..|...+.
T Consensus 182 Ad~i~~e~~----------~~~~~~~~i~~~~---~~P~n~~~~~-~~~~~~eL~~lGv~~v~~~~~~~r 237 (275)
T 2ze3_A 182 ADGIFVPLA----------LQSQDIRALADAL---RVPLNVMAFP-GSPVPRALLDAGAARVSFGQSLML 237 (275)
T ss_dssp CSEEECTTC----------CCHHHHHHHHHHC---SSCEEEECCT-TSCCHHHHHHTTCSEEECTTHHHH
T ss_pred CCEEEECCC----------CCHHHHHHHHHhc---CCCEEEecCC-CCCCHHHHHHcCCcEEEEChHHHH
Confidence 999999542 3356778888887 6887655331 122346667799999998876553
|
| >2v82_A 2-dehydro-3-deoxy-6-phosphogalactonate aldolase; lyase, kdpgal; HET: KDP; 2.1A {Escherichia coli} PDB: 2v81_A* | Back alignment and structure |
|---|
Probab=93.72 E-value=0.87 Score=38.51 Aligned_cols=115 Identities=13% Similarity=0.123 Sum_probs=69.9
Q ss_pred CCcEEEEeecCCCC--HHHHHHHHhcCCcEEEEccCCCc-HHHHHHHHh-CCCEEE---EecCCHHHHHHHHHcCCCEEE
Q 020013 63 ERPFGVGVVLAFPH--NENIKAILSEKVAVLQVSWGEYS-EELVLEAHS-AGVKVV---PQVGSFDEARKAVNAGVDAII 135 (332)
Q Consensus 63 ~~p~gvnl~~~~~~--~~~~~~~~~~~~~~I~~~~g~~~-~~~i~~~~~-~g~~v~---~~v~s~~~a~~a~~~g~D~iv 135 (332)
+.|+...+...+.. .+.++.+.+.|++.|++...++. .+.++.+.+ .+++++ ..+.+.+.+..+.+.|+|+|.
T Consensus 6 ~~~i~~~i~~~d~~~~~~~~~~~~~~G~~~i~l~~~~~~~~~~i~~i~~~~~~~l~vg~g~~~~~~~i~~a~~~Gad~V~ 85 (212)
T 2v82_A 6 KLPLIAILRGITPDEALAHVGAVIDAGFDAVEIPLNSPQWEQSIPAIVDAYGDKALIGAGTVLKPEQVDALARMGCQLIV 85 (212)
T ss_dssp SSCEEEECTTCCHHHHHHHHHHHHHHTCCEEEEETTSTTHHHHHHHHHHHHTTTSEEEEECCCSHHHHHHHHHTTCCEEE
T ss_pred CCCEEEEEeCCCHHHHHHHHHHHHHCCCCEEEEeCCChhHHHHHHHHHHhCCCCeEEEeccccCHHHHHHHHHcCCCEEE
Confidence 34555554433221 23455667789999998654332 234444433 354433 234577888999999999996
Q ss_pred EecCCCCcccCCCCchhhhHHHHHHHhCCCCCcEEeecCcCCHHHHHHHHHcCcceeee
Q 020013 136 VQGREAGGHVIGQDGLISLLPMVVDLIGDRDIPIIAAGGIVDARGYVAALSLGAQGICL 194 (332)
Q Consensus 136 v~G~eaGGh~~~~~~~~~ll~~i~~~~~~~~iPviaaGGI~~~~~v~~al~~GA~gV~~ 194 (332)
+ |.. ...++... +.. +.+++.. +.|++.+..+..+|+|.|.+
T Consensus 86 ~-----~~~------~~~~~~~~-~~~---g~~~~~g--~~t~~e~~~a~~~G~d~v~v 127 (212)
T 2v82_A 86 T-----PNI------HSEVIRRA-VGY---GMTVCPG--CATATEAFTALEAGAQALKI 127 (212)
T ss_dssp C-----SSC------CHHHHHHH-HHT---TCEEECE--ECSHHHHHHHHHTTCSEEEE
T ss_pred e-----CCC------CHHHHHHH-HHc---CCCEEee--cCCHHHHHHHHHCCCCEEEE
Confidence 3 111 12333332 333 5666543 88999999999999999885
|
| >3g8r_A Probable spore coat polysaccharide biosynthesis P; structural genomics, protein structure initiative; 2.49A {Chromobacterium violaceum atcc 12472} | Back alignment and structure |
|---|
Probab=93.71 E-value=2.5 Score=38.96 Aligned_cols=143 Identities=12% Similarity=0.069 Sum_probs=88.0
Q ss_pred cCCcEEEEeecCCCCHHHHHHHHhcCCcEEEEccCC-CcHHHHHHHHhCCCEEEEec--CCHHHHHHHH----HcCCCEE
Q 020013 62 TERPFGVGVVLAFPHNENIKAILSEKVAVLQVSWGE-YSEELVLEAHSAGVKVVPQV--GSFDEARKAV----NAGVDAI 134 (332)
Q Consensus 62 ~~~p~gvnl~~~~~~~~~~~~~~~~~~~~I~~~~g~-~~~~~i~~~~~~g~~v~~~v--~s~~~a~~a~----~~g~D~i 134 (332)
++.+|-.-.| +.+.++.+.+.+++++.++.++ ....+++.+-+.|.+|+.+. .+.+|...+. +.|.+.+
T Consensus 90 ~Gi~~~st~f----D~~svd~l~~~~v~~~KI~S~~~~N~pLL~~va~~gKPviLstGmstl~Ei~~Ave~i~~~g~~vi 165 (350)
T 3g8r_A 90 NGFKAICTPF----DEESVDLIEAHGIEIIKIASCSFTDWPLLERIARSDKPVVASTAGARREDIDKVVSFMLHRGKDLT 165 (350)
T ss_dssp TTCEEEEEEC----SHHHHHHHHHTTCCEEEECSSSTTCHHHHHHHHTSCSCEEEECTTCCHHHHHHHHHHHHTTTCCEE
T ss_pred cCCcEEeccC----CHHHHHHHHHcCCCEEEECcccccCHHHHHHHHhhCCcEEEECCCCCHHHHHHHHHHHHHcCCCEE
Confidence 3454444333 4678888889999999997543 23467888888899999764 4787776654 3578877
Q ss_pred EEecCCCCcccCC-CCchhhhHHHHHHHhCCCCCcEEee----cCcCCHHHHHHHHHcCcceeeeccccccCc-------
Q 020013 135 IVQGREAGGHVIG-QDGLISLLPMVVDLIGDRDIPIIAA----GGIVDARGYVAALSLGAQGICLGTRFVASE------- 202 (332)
Q Consensus 135 vv~G~eaGGh~~~-~~~~~~ll~~i~~~~~~~~iPviaa----GGI~~~~~v~~al~~GA~gV~~GT~fl~t~------- 202 (332)
+++... +.... ....+..++.+++..+ ++||..+ |+. . .-..++.++||+ ++=--|-..+
T Consensus 166 LlhC~s--~YPt~~~~~nL~aI~~Lk~~fp--~lpVG~SdHt~g~~-~-~~~~AAvAlGA~--vIEkH~tldr~~g~D~~ 237 (350)
T 3g8r_A 166 IMHCVA--EYPTPDDHLHLARIKTLRQQYA--GVRIGYSTHEDPDL-M-EPIMLAVAQGAT--VFEKHVGLPTDQYGINN 237 (350)
T ss_dssp EEECCC--CSSCCGGGCCTTHHHHHHHHCT--TSEEEEEECCCSSC-C-HHHHHHHHTTCC--EEEEEBCCCBTTBCCCT
T ss_pred EEecCC--CCCCCcccCCHHHHHHHHHHCC--CCCEEcCCCCCCCc-c-HHHHHHHHcCCC--EEEEecCcccCCCCccc
Confidence 775431 12101 1123667888887763 5898665 333 2 223478899997 3333333333
Q ss_pred cCCCCHHHHHHHhc
Q 020013 203 ESYAHPEYKRKLVE 216 (332)
Q Consensus 203 Es~~~~~~k~~~~~ 216 (332)
-|-.++++++.+.+
T Consensus 238 ~Sl~P~ef~~lv~~ 251 (350)
T 3g8r_A 238 YSANPEQVRRWLAA 251 (350)
T ss_dssp TCBCHHHHHHHHHH
T ss_pred ccCCHHHHHHHHHH
Confidence 22245666766554
|
| >2htm_A Thiazole biosynthesis protein THIG; thiamin biosynthesis, THIG, thermus thermophilus HB8, structural genomics, NPPSFA; 2.30A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=93.69 E-value=0.36 Score=42.65 Aligned_cols=128 Identities=21% Similarity=0.250 Sum_probs=77.8
Q ss_pred chhhcCCccceecCCCCCCCCcHHHHHHHHhC----CCceee-----cCCCCCCHHHHHHHHHHHHhhcCCcEEEEee-c
Q 020013 3 WRGMLGFEYGIVQAPLGPDISGPELVAAVANA----GGLGLL-----RAPDWEAPDYLRDLIRKTRSLTERPFGVGVV-L 72 (332)
Q Consensus 3 ~~~~l~~~~Pii~apM~~g~s~~~la~avs~a----GglG~i-----~~~~~~~~e~~~~~i~~~r~~~~~p~gvnl~-~ 72 (332)
+.+.+. +|+++ |-..|.++.+-+..+++. ++--.+ ....+..|| ..+.+++.+.+.+.=|-| + +
T Consensus 57 ~~~~i~-~~~~l--pntaG~~taeeAv~~a~lare~~gt~~iKlEvi~d~~~l~pD-~~~tv~aa~~L~k~Gf~V--lpy 130 (268)
T 2htm_A 57 LLEALE-GVRLL--PNTAGARTAEEAVRLARLGRLLTGERWVKLEVIPDPTYLLPD-PLETLKAAERLIEEDFLV--LPY 130 (268)
T ss_dssp HHHHTT-TSEEE--EBCTTCCSHHHHHHHHHHHHHHHCCSEEBCCCCSCTTTTCCC-HHHHHHHHHHHHHTTCEE--CCE
T ss_pred HHHHHh-hhhcc--CcccCCCCHHHHHHHHHhhhHhcCcceeeeeeccCccccCcC-HHHHHHHHHHHHHCCCEE--eec
Confidence 345555 77776 544589998887777664 233333 222233443 345666666653211221 1 1
Q ss_pred CCCCHHHHHHHHhcCCcEEEE-c------cCCCcHHHHHHHHh--CC-CEEEE--ecCCHHHHHHHHHcCCCEEEE
Q 020013 73 AFPHNENIKAILSEKVAVLQV-S------WGEYSEELVLEAHS--AG-VKVVP--QVGSFDEARKAVNAGVDAIIV 136 (332)
Q Consensus 73 ~~~~~~~~~~~~~~~~~~I~~-~------~g~~~~~~i~~~~~--~g-~~v~~--~v~s~~~a~~a~~~g~D~ivv 136 (332)
..++....+.+.+.++++|.- + .|...+++++.+++ .+ ++|+. .+.+++++..+.+.|+|+|++
T Consensus 131 ~~~D~~~ak~l~~~G~~aVmPlg~pIGsG~Gi~~~~~L~~i~~~~~~~vPVI~~GGI~tpsDAa~AmeLGAdgVlV 206 (268)
T 2htm_A 131 MGPDLVLAKRLAALGTATVMPLAAPIGSGWGVRTRALLELFAREKASLPPVVVDAGLGLPSHAAEVMELGLDAVLV 206 (268)
T ss_dssp ECSCHHHHHHHHHHTCSCBEEBSSSTTTCCCSTTHHHHHHHHHTTTTSSCBEEESCCCSHHHHHHHHHTTCCEEEE
T ss_pred cCCCHHHHHHHHhcCCCEEEecCccCcCCcccCCHHHHHHHHHhcCCCCeEEEeCCCCCHHHHHHHHHcCCCEEEE
Confidence 123345667777889998843 1 11223566777777 25 77775 477999999999999999998
|
| >3b0p_A TRNA-dihydrouridine synthase; TIM barrel, oxidoreductase; HET: FMN; 1.70A {Thermus thermophilus} PDB: 3b0u_X* 3b0v_C* | Back alignment and structure |
|---|
Probab=93.69 E-value=0.85 Score=42.10 Aligned_cols=89 Identities=17% Similarity=0.232 Sum_probs=63.8
Q ss_pred CHHHHHHHHHHHHhhcCCcEEEEeec--CCC-----CHHHHHHHHhcCCcEEEEccCC---------------CcHHHHH
Q 020013 47 APDYLRDLIRKTRSLTERPFGVGVVL--AFP-----HNENIKAILSEKVAVLQVSWGE---------------YSEELVL 104 (332)
Q Consensus 47 ~~e~~~~~i~~~r~~~~~p~gvnl~~--~~~-----~~~~~~~~~~~~~~~I~~~~g~---------------~~~~~i~ 104 (332)
.++.+.+.++.+++..+.|+.+.+-. ... ..+.++.+.+.|++.|.++.+. ...++++
T Consensus 110 ~~~~~~eiv~av~~~v~~PV~vKiR~g~~~~~~~~~~~~~a~~l~~aG~d~I~V~~r~~~~g~~g~~~~~~~~~~~~~i~ 189 (350)
T 3b0p_A 110 DLARVREILKAMGEAVRVPVTVKMRLGLEGKETYRGLAQSVEAMAEAGVKVFVVHARSALLALSTKANREIPPLRHDWVH 189 (350)
T ss_dssp CHHHHHHHHHHHHHHCSSCEEEEEESCBTTCCCHHHHHHHHHHHHHTTCCEEEEECSCBC----------CCCCCHHHHH
T ss_pred CHHHHHHHHHHHHHHhCCceEEEEecCcCccccHHHHHHHHHHHHHcCCCEEEEecCchhcccCcccccCCCcccHHHHH
Confidence 46778888999988778898885422 111 1234567778999999988421 0235667
Q ss_pred HHHhC--CCEEEE--ecCCHHHHHHHHHcCCCEEEE
Q 020013 105 EAHSA--GVKVVP--QVGSFDEARKAVNAGVDAIIV 136 (332)
Q Consensus 105 ~~~~~--g~~v~~--~v~s~~~a~~a~~~g~D~ivv 136 (332)
.+++. +++|+. .+.|.+++.++++ |+|+|.+
T Consensus 190 ~ik~~~~~iPVianGgI~s~eda~~~l~-GaD~V~i 224 (350)
T 3b0p_A 190 RLKGDFPQLTFVTNGGIRSLEEALFHLK-RVDGVML 224 (350)
T ss_dssp HHHHHCTTSEEEEESSCCSHHHHHHHHT-TSSEEEE
T ss_pred HHHHhCCCCeEEEECCcCCHHHHHHHHh-CCCEEEE
Confidence 77653 688885 4779999999998 9999988
|
| >1f76_A Dihydroorotate dehydrogenase; monomer, alpha-beta-barrel, FMN binding domain, orotate complex, oxidoreductase; HET: MSE FMN ORO; 2.50A {Bacteria} SCOP: c.1.4.1 | Back alignment and structure |
|---|
Probab=93.68 E-value=0.43 Score=43.66 Aligned_cols=90 Identities=13% Similarity=0.212 Sum_probs=62.5
Q ss_pred CHHHHHHHHHHHHhhc---------CCcEEEEeecCCCC---HHHHHHHHhcCCcEEEEccCC-----------------
Q 020013 47 APDYLRDLIRKTRSLT---------ERPFGVGVVLAFPH---NENIKAILSEKVAVLQVSWGE----------------- 97 (332)
Q Consensus 47 ~~e~~~~~i~~~r~~~---------~~p~gvnl~~~~~~---~~~~~~~~~~~~~~I~~~~g~----------------- 97 (332)
+++.+.+.++.+|+.+ +.|+.+.+-..... .+..+.+.+.|+|+|.++.+.
T Consensus 186 ~~~~~~~il~~vr~~~~~~~~~~g~~~Pv~vKi~~~~~~~~~~~~a~~l~~~Gvd~i~vsn~~~~~~~~~~~~~~~~~gg 265 (336)
T 1f76_A 186 YGEALDDLLTAIKNKQNDLQAMHHKYVPIAVKIAPDLSEEELIQVADSLVRHNIDGVIATNTTLDRSLVQGMKNCDQTGG 265 (336)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHHHTSCCCEEEECCSCCCHHHHHHHHHHHHHTTCSEEEECCCBCCCTTSTTSTTTTCSSE
T ss_pred CHHHHHHHHHHHHHHHHhhhhcccccCceEEEecCCCCHHHHHHHHHHHHHcCCcEEEEeCCcccccccccccccccCCC
Confidence 3556677888888776 78999886543221 233567788999999876221
Q ss_pred Cc--------HHHHHHHHhC---CCEEEE--ecCCHHHHHHHHHcCCCEEEE
Q 020013 98 YS--------EELVLEAHSA---GVKVVP--QVGSFDEARKAVNAGVDAIIV 136 (332)
Q Consensus 98 ~~--------~~~i~~~~~~---g~~v~~--~v~s~~~a~~a~~~g~D~ivv 136 (332)
.+ .++++.+++. +++|+. .+.+.+++.++++.|||.|-+
T Consensus 266 ~~g~~~~~~~~~~i~~i~~~~~~~ipVi~~GGI~~~~da~~~l~~GAd~V~i 317 (336)
T 1f76_A 266 LSGRPLQLKSTEIIRRLSLELNGRLPIIGVGGIDSVIAAREKIAAGASLVQI 317 (336)
T ss_dssp EEEGGGHHHHHHHHHHHHHHHTTSSCEEEESSCCSHHHHHHHHHHTCSEEEE
T ss_pred cCCchhHHHHHHHHHHHHHHhCCCCCEEEECCCCCHHHHHHHHHCCCCEEEe
Confidence 00 1445555542 678775 478999999999999999987
|
| >3m9y_A Triosephosphate isomerase; TIM barrel, glycolysis, gluconeogenesis, pentose; HET: CIT; 1.90A {Staphylococcus aureus} SCOP: c.1.1.1 PDB: 3uwv_A* 3uwu_A* 3uww_A* 3uwy_A 3uwz_A* | Back alignment and structure |
|---|
Probab=93.61 E-value=0.58 Score=41.23 Aligned_cols=118 Identities=18% Similarity=0.232 Sum_probs=71.7
Q ss_pred HHHHHHhcCCcEEEEc-------cCCCcHHHH----HHHHhCCCEEEEecCC-HHH-------------HHHHHHcCCC-
Q 020013 79 NIKAILSEKVAVLQVS-------WGEYSEELV----LEAHSAGVKVVPQVGS-FDE-------------ARKAVNAGVD- 132 (332)
Q Consensus 79 ~~~~~~~~~~~~I~~~-------~g~~~~~~i----~~~~~~g~~v~~~v~s-~~~-------------a~~a~~~g~D- 132 (332)
....+.+.|++++.++ |+. ..+.+ +.+.+.|+.++..++. .++ ...++ .+.+
T Consensus 82 S~~mL~d~G~~~ViiGHSERR~~f~E-td~~V~~Kv~~Al~~GL~pIlCvGEtleere~g~t~~vv~~Ql~~~l-~~~~~ 159 (254)
T 3m9y_A 82 SPVALADLGVKYVVIGHSERRELFHE-TDEEINKKAHAIFKHGMTPIICVGETDEERESGKANDVVGEQVKKAV-AGLSE 159 (254)
T ss_dssp CHHHHHHTTCCEEEESCHHHHHHSCC-CHHHHHHHHHHHHHTTCEEEEEECCCHHHHHTTCHHHHHHHHHHHHH-TTCCH
T ss_pred CHHHHHHcCCCEEEECcccccCccCC-CHHHHHHHHHHHHHCCCEEEEEcCCcHHHHHCCCHHHHHHHHHHHHH-hcCCH
Confidence 4667888999999985 454 34443 4456789998888873 332 11122 2332
Q ss_pred ------EEEEecCCCCcccCCCCch-------hhhHHHHHHHh-C---CCCCcEEeecCcCCHHHHHHHH-HcCcceeee
Q 020013 133 ------AIIVQGREAGGHVIGQDGL-------ISLLPMVVDLI-G---DRDIPIIAAGGIVDARGYVAAL-SLGAQGICL 194 (332)
Q Consensus 133 ------~ivv~G~eaGGh~~~~~~~-------~~ll~~i~~~~-~---~~~iPviaaGGI~~~~~v~~al-~~GA~gV~~ 194 (332)
.|-.+..-+=|. |...+ ...|++..... . ..+++|+-.|+| +++|+.+.+ ..+.||+.+
T Consensus 160 ~~~~~vvIAYEPvWAIGT--G~~At~e~aqevh~~IR~~l~~~~~~~~a~~~rIlYGGSV-~~~N~~~l~~~~diDG~LV 236 (254)
T 3m9y_A 160 DQLKSVVIAYEPIWAIGT--GKSSTSEDANEMCAFVRQTIADLSSKEVSEATRIQYGGSV-KPNNIKEYMAQTDIDGALV 236 (254)
T ss_dssp HHHHHCEEEECCGGGCC----CCCCHHHHHHHHHHHHHHHHHHSCHHHHTTSEEEECSCC-CTTTHHHHHTSTTCCEEEE
T ss_pred HHhCCEEEEECChhhhcC--CCCCCHHHHHHHHHHHHHHHHHhcChhhcCCccEEEcCCc-CHHHHHHHHcCCCCCeEEe
Confidence 343455445443 22122 22233322111 1 026899999999 999999999 579999999
Q ss_pred ccccccC
Q 020013 195 GTRFVAS 201 (332)
Q Consensus 195 GT~fl~t 201 (332)
|.+-|..
T Consensus 237 GgASL~~ 243 (254)
T 3m9y_A 237 GGASLKV 243 (254)
T ss_dssp SGGGSSH
T ss_pred eHHhhCH
Confidence 9996643
|
| >1b9b_A TIM, protein (triosephosphate isomerase); thermophilic; 2.85A {Thermotoga maritima} SCOP: c.1.1.1 | Back alignment and structure |
|---|
Probab=93.58 E-value=0.33 Score=42.83 Aligned_cols=118 Identities=18% Similarity=0.269 Sum_probs=71.8
Q ss_pred HHHHHHhcCCcEEEEc-------cCCCcHHH----HHHHHhCCCEEEEecC-CHHH--H-----------HHHHHcCC--
Q 020013 79 NIKAILSEKVAVLQVS-------WGEYSEEL----VLEAHSAGVKVVPQVG-SFDE--A-----------RKAVNAGV-- 131 (332)
Q Consensus 79 ~~~~~~~~~~~~I~~~-------~g~~~~~~----i~~~~~~g~~v~~~v~-s~~~--a-----------~~a~~~g~-- 131 (332)
....+.+.|++++.++ |+. ..+. ++...+.|+.++..++ +.++ + +.++ .+.
T Consensus 80 S~~mL~d~G~~~ViiGHSERR~~f~E-td~~v~~Kv~~Al~~GL~pI~CvGEtleere~g~t~~vv~~Ql~~~l-~~~~~ 157 (255)
T 1b9b_A 80 SPLMLQEIGVEYVIVGHSERRRIFKE-DDEFINRKVKAVLEKGMTPILCVGETLEEREKGLTFCVVEKQVREGF-YGLDK 157 (255)
T ss_dssp CHHHHHTTTCCEEEESCHHHHHTSCC-CHHHHHHHHHHHHHTTCEEEEEECCCHHHHHHTCHHHHHHHHHHHHH-TTCCH
T ss_pred CHHHHHHcCCCEEEECchhhccccCC-CHHHHHHHHHHHHHCCCEEEEEcCCcHHHHhcCCHHHHHHHHHHHHH-hcCCH
Confidence 4567888999999985 454 3444 4556678999888887 3332 1 1122 222
Q ss_pred ----CEEEE-ecCCCCcccCCCCch-------hhhHHHHHHH-hC---CCCCcEEeecCcCCHHHHHHHH-HcCcceeee
Q 020013 132 ----DAIIV-QGREAGGHVIGQDGL-------ISLLPMVVDL-IG---DRDIPIIAAGGIVDARGYVAAL-SLGAQGICL 194 (332)
Q Consensus 132 ----D~ivv-~G~eaGGh~~~~~~~-------~~ll~~i~~~-~~---~~~iPviaaGGI~~~~~v~~al-~~GA~gV~~ 194 (332)
..+++ +..-+=|. |...+ ...+++.... +. ..+++|+..|+| +++|+.+.+ ..+.||+.+
T Consensus 158 ~~~~~~vIAYEPvWAIGT--G~~Atpe~aqevh~~IR~~l~~~~~~~~a~~vrIlYGGSV-~~~N~~~l~~~~diDG~LV 234 (255)
T 1b9b_A 158 EEAKRVVIAYEPVWAIGT--GRVATPQQAQEVHAFIRKLLSEMYDEETAGSIRILYGGSI-KPDNFLGLIVQKDIDGGLV 234 (255)
T ss_dssp HHHTTCEEEECCGGGSSS--SCCCCHHHHHHHHHHHHHHHHHHSCHHHHHHSEEEEESSC-CHHHHTTTSSSTTCCEEEE
T ss_pred HHcCCEEEEECCHHHhCC--CCCCCHHHHHHHHHHHHHHHHHhcCccccCcceEEEcCcC-CHHHHHHHHcCCCCCeeEe
Confidence 33443 44444332 12122 2333332211 10 014899999999 889999998 579999999
Q ss_pred ccccccC
Q 020013 195 GTRFVAS 201 (332)
Q Consensus 195 GT~fl~t 201 (332)
|++-+..
T Consensus 235 GgASLka 241 (255)
T 1b9b_A 235 GGASLKE 241 (255)
T ss_dssp SGGGTST
T ss_pred ehHhhcC
Confidence 9997754
|
| >1xm3_A Thiazole biosynthesis protein THIG; structural genomics, protein structure initiative, PSI, NESG, northeast structural genomics consortium; 1.80A {Bacillus subtilis} SCOP: c.1.31.1 PDB: 1tyg_A | Back alignment and structure |
|---|
Probab=93.56 E-value=0.65 Score=41.11 Aligned_cols=125 Identities=15% Similarity=0.107 Sum_probs=73.3
Q ss_pred CccceecCCCCCCCCcHH----HHHHHHhCCCceeecC---CC-CCCHHHHHHHHHHHHhhcCCcEEEEeecCCCCHHHH
Q 020013 9 FEYGIVQAPLGPDISGPE----LVAAVANAGGLGLLRA---PD-WEAPDYLRDLIRKTRSLTERPFGVGVVLAFPHNENI 80 (332)
Q Consensus 9 ~~~Pii~apM~~g~s~~~----la~avs~aGglG~i~~---~~-~~~~e~~~~~i~~~r~~~~~p~gvnl~~~~~~~~~~ 80 (332)
++.|++..+. +..+++ ++....++|+-+++.. +. ....++..+.++.++++....+-+-.+. .+..+.+
T Consensus 64 ~~~~~~pn~~--~~~~~~~~~~f~~~a~~agg~~~i~l~i~~d~~~~~~e~~~~~~~a~~~~~~g~~vi~~~-~~~~~~a 140 (264)
T 1xm3_A 64 SKYTLLPNTA--GASTAEEAVRIARLAKASGLCDMIKVEVIGCSRSLLPDPVETLKASEQLLEEGFIVLPYT-SDDVVLA 140 (264)
T ss_dssp GGSEEEEECT--TCSSHHHHHHHHHHHHHTTCCSSEEECCBCCTTTCCBCHHHHHHHHHHHHHTTCCEEEEE-CSCHHHH
T ss_pred cCCeEcCCcc--ccCCHHHHHHHHHHHHHcCCCCeEEEeecCCCcccccchHHHHHHHHHHHCCCeEEEEEc-CCCHHHH
Confidence 4566654443 356665 5555667777777421 11 1112445566777766532122222111 2234567
Q ss_pred HHHHhcCCcEEEEc---cC----CCcHHHHHHHHh-CCCEEEE--ecCCHHHHHHHHHcCCCEEEE
Q 020013 81 KAILSEKVAVLQVS---WG----EYSEELVLEAHS-AGVKVVP--QVGSFDEARKAVNAGVDAIIV 136 (332)
Q Consensus 81 ~~~~~~~~~~I~~~---~g----~~~~~~i~~~~~-~g~~v~~--~v~s~~~a~~a~~~g~D~ivv 136 (332)
+.+.+.++++|... .| ....+.++.+++ .+++++. .+.+.+++..+.+.|+|+|++
T Consensus 141 ~~~~~~gad~v~~~~~~~Gt~~~~~~~~~l~~i~~~~~iPviv~gGI~t~eda~~~~~~GAdgViV 206 (264)
T 1xm3_A 141 RKLEELGVHAIMPGASPIGSGQGILNPLNLSFIIEQAKVPVIVDAGIGSPKDAAYAMELGADGVLL 206 (264)
T ss_dssp HHHHHHTCSCBEECSSSTTCCCCCSCHHHHHHHHHHCSSCBEEESCCCSHHHHHHHHHTTCSEEEE
T ss_pred HHHHHhCCCEEEECCcccCCCCCCCCHHHHHHHHhcCCCCEEEEeCCCCHHHHHHHHHcCCCEEEE
Confidence 77888899988431 12 112456666665 3666665 477899999999999999999
|
| >3qze_A DHDPS, dihydrodipicolinate synthase; alpha beta barrel, cytoplasmic; 1.59A {Pseudomonas aeruginosa} PDB: 3puo_A* 3noe_A 3ps7_A* 3s8h_A | Back alignment and structure |
|---|
Probab=93.56 E-value=0.14 Score=46.69 Aligned_cols=78 Identities=28% Similarity=0.363 Sum_probs=49.2
Q ss_pred HHHHHHcCCCEEEEecCCCCcccCCCCchhhhHHHHHHHhCCCCCcEEeecCcCCHHHHH----HHHHcCcceeeecccc
Q 020013 123 ARKAVNAGVDAIIVQGREAGGHVIGQDGLISLLPMVVDLIGDRDIPIIAAGGIVDARGYV----AALSLGAQGICLGTRF 198 (332)
Q Consensus 123 a~~a~~~g~D~ivv~G~eaGGh~~~~~~~~~ll~~i~~~~~~~~iPviaaGGI~~~~~v~----~al~~GA~gV~~GT~f 198 (332)
++...+.|+|+|++-|..+-+.......-..++..+++...+ ++|||+.=|=.+-++.. .+-++|||++++-+.+
T Consensus 50 v~~li~~Gv~Gl~v~GtTGE~~~Ls~~Er~~v~~~~v~~~~g-rvpViaGvg~~st~eai~la~~A~~~Gadavlv~~P~ 128 (314)
T 3qze_A 50 VDFHLQEGTNAIVAVGTTGESATLDVEEHIQVIRRVVDQVKG-RIPVIAGTGANSTREAVALTEAAKSGGADACLLVTPY 128 (314)
T ss_dssp HHHHHHHTCCEEEESSGGGTGGGCCHHHHHHHHHHHHHHHTT-SSCEEEECCCSSHHHHHHHHHHHHHTTCSEEEEECCC
T ss_pred HHHHHHcCCCEEEECccccChhhCCHHHHHHHHHHHHHHhCC-CCcEEEeCCCcCHHHHHHHHHHHHHcCCCEEEEcCCC
Confidence 345668899999997664433321212224566666666643 68988754433444433 3445899999999987
Q ss_pred ccC
Q 020013 199 VAS 201 (332)
Q Consensus 199 l~t 201 (332)
...
T Consensus 129 y~~ 131 (314)
T 3qze_A 129 YNK 131 (314)
T ss_dssp SSC
T ss_pred CCC
Confidence 764
|
| >3pm6_A Putative fructose-bisphosphate aldolase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 2.20A {Coccidioides immitis} | Back alignment and structure |
|---|
Probab=93.54 E-value=4.1 Score=36.74 Aligned_cols=135 Identities=16% Similarity=0.186 Sum_probs=85.4
Q ss_pred CCcEEEEeecCCCCHHHHHHHHhc--------CCcEEEEccCCCcH--------HHHHHHHhCCCEEEE-----------
Q 020013 63 ERPFGVGVVLAFPHNENIKAILSE--------KVAVLQVSWGEYSE--------ELVLEAHSAGVKVVP----------- 115 (332)
Q Consensus 63 ~~p~gvnl~~~~~~~~~~~~~~~~--------~~~~I~~~~g~~~~--------~~i~~~~~~g~~v~~----------- 115 (332)
+.|+.+++=--. ..+.+..+++. |...|-+.....|. ++++.++..|+.|=.
T Consensus 82 ~VPVaLHlDHg~-~~e~i~~ai~~~~~~~~~~GFtSVMiDgS~~p~eENi~~Tk~vv~~ah~~gvsVEaElG~igG~Edg 160 (306)
T 3pm6_A 82 SVPITLHLDHAQ-DPEIIKRAADLSRSETHEPGFDSIMVDMSHFSKEENLRLTRELVAYCNARGIATEAEPGRIEGGEDG 160 (306)
T ss_dssp SSCEEEEEEEEC-CHHHHHHHHHTC------CCCSEEEECCTTSCHHHHHHHHHHHHHHHHTTTCEEEECSSBCCCCBTT
T ss_pred CCCEEEEcCCCC-CHHHHHHHHHhhhhccCCCCCCEEEEeCCCCCHHHHHHHHHHHHHHHHHcCCeEEEEeeeeccccCC
Confidence 445555432111 24566677777 77777665333332 455666666665421
Q ss_pred ---------ecCCHHHHHHHHHcCCCEEEE-ecCCCCcccC-CCCchhhhHHHHHHHhCCCCCcEEeecCcC-CHHHHHH
Q 020013 116 ---------QVGSFDEARKAVNAGVDAIIV-QGREAGGHVI-GQDGLISLLPMVVDLIGDRDIPIIAAGGIV-DARGYVA 183 (332)
Q Consensus 116 ---------~v~s~~~a~~a~~~g~D~ivv-~G~eaGGh~~-~~~~~~~ll~~i~~~~~~~~iPviaaGGI~-~~~~v~~ 183 (332)
..++++++....+.|+|.+-+ .|.-=|-... .+.-.+.+|.++.+.+.. ++|++.-||=+ ..+++.+
T Consensus 161 v~~~~~~~~~yT~Peea~~Fv~TgvD~LAvaiGt~HG~Yk~~~p~Ld~~~L~~I~~~v~~-~vpLVlHGgSG~p~e~i~~ 239 (306)
T 3pm6_A 161 VQDTVDLEGVLTTPEESEEFVATGINWLAPAFGNVHGNYGPRGVQLDYERLQRINEAVGE-RVGLVLHGADPFTKEIFEK 239 (306)
T ss_dssp BCCCTTCCCBCCCHHHHHHHHTTTCSEECCCSSCCSSCCCTTCCCCCHHHHHHHHHHHTT-TSEEEECSCTTCCHHHHHH
T ss_pred ccccccccccCCCHHHHHHHHHcCCCEEEEEcCccccCcCCCCCccCHHHHHHHHHHhCC-CCCEEeeCCCCCCHHHHHH
Confidence 236799999988999997765 2321111111 123458889999988732 59999887543 4567899
Q ss_pred HHHcCcceeeeccccc
Q 020013 184 ALSLGAQGICLGTRFV 199 (332)
Q Consensus 184 al~~GA~gV~~GT~fl 199 (332)
++.+|..-|=++|-+.
T Consensus 240 ai~~GV~KiNi~Tdl~ 255 (306)
T 3pm6_A 240 CIERGVAKVNVNRAVN 255 (306)
T ss_dssp HHHTTEEEEEESHHHH
T ss_pred HHHcCCeEEEeChHHH
Confidence 9999999999999764
|
| >1qwg_A PSL synthase;, (2R)-phospho-3-sulfolactate synthase; beta-alpha-barrel, lyase; 1.60A {Methanocaldococcus jannaschii} SCOP: c.1.27.1 | Back alignment and structure |
|---|
Probab=93.47 E-value=0.32 Score=42.61 Aligned_cols=97 Identities=21% Similarity=0.243 Sum_probs=66.8
Q ss_pred CCHHHHHHHHHHHHhhcCCcEEEE-ee-----cCCCCHHHHHHHHhcCCcEEEEccCCC--cH----HHHHHHHhCCCEE
Q 020013 46 EAPDYLRDLIRKTRSLTERPFGVG-VV-----LAFPHNENIKAILSEKVAVLQVSWGEY--SE----ELVLEAHSAGVKV 113 (332)
Q Consensus 46 ~~~e~~~~~i~~~r~~~~~p~gvn-l~-----~~~~~~~~~~~~~~~~~~~I~~~~g~~--~~----~~i~~~~~~g~~v 113 (332)
.+.+.+++.++..++. +.++..+ .+ .....+++++.+.+.|.++|.++-|.. |. ++++.+++.|.++
T Consensus 52 ~~~~~l~eki~l~~~~-gV~v~~GGTl~E~~~~qg~~~~yl~~~k~lGf~~iEiS~G~i~l~~~~~~~~I~~~~~~G~~v 130 (251)
T 1qwg_A 52 IDRDVVKEKINYYKDW-GIKVYPGGTLFEYAYSKGKFDEFLNECEKLGFEAVEISDGSSDISLEERNNAIKRAKDNGFMV 130 (251)
T ss_dssp SCHHHHHHHHHHHHTT-TCEEEECHHHHHHHHHTTCHHHHHHHHHHHTCCEEEECCSSSCCCHHHHHHHHHHHHHTTCEE
T ss_pred cCHHHHHHHHHHHHHc-CCeEECCcHHHHHHHHcCcHHHHHHHHHHcCCCEEEECCCcccCCHHHHHHHHHHHHHCCCEE
Confidence 4566788888888764 2222211 00 011236789999999999999986541 22 4677788899999
Q ss_pred EEecCC--H------------HHHHHHHHcCCCEEEEecCCCCc
Q 020013 114 VPQVGS--F------------DEARKAVNAGVDAIIVQGREAGG 143 (332)
Q Consensus 114 ~~~v~s--~------------~~a~~a~~~g~D~ivv~G~eaGG 143 (332)
+..++. . +.+++.+++|+|.|++++.|+|-
T Consensus 131 ~~EvG~k~~~~~~~~~~~~~I~~~~~~LeAGA~~ViiEarEsG~ 174 (251)
T 1qwg_A 131 LTEVGKKMPDKDKQLTIDDRIKLINFDLDAGADYVIIEGRESGK 174 (251)
T ss_dssp EEEECCSSHHHHTTCCHHHHHHHHHHHHHHTCSEEEECCTTTCC
T ss_pred eeeccccCCcccCCCCHHHHHHHHHHHHHCCCcEEEEeeecccC
Confidence 987652 2 34556788999999999999874
|
| >1ep3_A Dihydroorotate dehydrogenase B (PYRD subunit); heterotetramer, alpha-beta barrel, beta sandwich, FAD domain alpha/beta NADP domain; HET: FMN FAD; 2.10A {Lactococcus lactis} SCOP: c.1.4.1 PDB: 1ep2_A* 1ep1_A* | Back alignment and structure |
|---|
Probab=93.40 E-value=0.87 Score=40.87 Aligned_cols=90 Identities=14% Similarity=0.168 Sum_probs=64.8
Q ss_pred CHHHHHHHHHHHHhhcCCcEEEEeecCC-CCHHHHHHHHhcCCcEEEEcc--------C-C--------------Cc---
Q 020013 47 APDYLRDLIRKTRSLTERPFGVGVVLAF-PHNENIKAILSEKVAVLQVSW--------G-E--------------YS--- 99 (332)
Q Consensus 47 ~~e~~~~~i~~~r~~~~~p~gvnl~~~~-~~~~~~~~~~~~~~~~I~~~~--------g-~--------------~~--- 99 (332)
+++.+.+.++++++..+.|+.+.+.... ...+.++.+.+.|+|+|.+.. . . +.
T Consensus 148 ~~~~~~eii~~v~~~~~~pv~vk~~~~~~~~~~~a~~l~~~G~d~i~v~~~~~g~~i~~~~~~~~~~~~~~g~~g~~~~~ 227 (311)
T 1ep3_A 148 DPEVAAALVKACKAVSKVPLYVKLSPNVTDIVPIAKAVEAAGADGLTMINTLMGVRFDLKTRQPILANITGGLSGPAIKP 227 (311)
T ss_dssp CHHHHHHHHHHHHHHCSSCEEEEECSCSSCSHHHHHHHHHTTCSEEEECCCEEECCBCTTTCSBSSTTSCEEEESGGGHH
T ss_pred CHHHHHHHHHHHHHhcCCCEEEEECCChHHHHHHHHHHHHcCCCEEEEeCCCcccccCcccCCccccCCCCcccCccchH
Confidence 5677788899998877889888765322 225567788899999998831 0 0 00
Q ss_pred --HHHHHHHHhC-CCEEEE--ecCCHHHHHHHHHcCCCEEEE
Q 020013 100 --EELVLEAHSA-GVKVVP--QVGSFDEARKAVNAGVDAIIV 136 (332)
Q Consensus 100 --~~~i~~~~~~-g~~v~~--~v~s~~~a~~a~~~g~D~ivv 136 (332)
.++++.+++. .++|+. .+.+.+++.++.+.|+|+|.+
T Consensus 228 ~~~~~i~~i~~~~~ipvia~GGI~~~~d~~~~l~~GAd~V~v 269 (311)
T 1ep3_A 228 VALKLIHQVAQDVDIPIIGMGGVANAQDVLEMYMAGASAVAV 269 (311)
T ss_dssp HHHHHHHHHHTTCSSCEEECSSCCSHHHHHHHHHHTCSEEEE
T ss_pred HHHHHHHHHHHhcCCCEEEECCcCCHHHHHHHHHcCCCEEEE
Confidence 2556666654 677775 477999999999999999988
|
| >3eb2_A Putative dihydrodipicolinate synthetase; lysine biosynthesis, pyruvate, TIM barrel, NYSGXRC, PSI2., structural genomics; HET: PGE; 2.04A {Rhodopseudomonas palustris} SCOP: c.1.10.0 | Back alignment and structure |
|---|
Probab=93.39 E-value=0.1 Score=47.28 Aligned_cols=121 Identities=14% Similarity=0.174 Sum_probs=67.9
Q ss_pred HHHHHHcCCCEEEEecCCCCcccCCCCchhhhHHHHHHHhCCCCCcEEee-cCcCCHHHHH---HHHHcCcceeeecccc
Q 020013 123 ARKAVNAGVDAIIVQGREAGGHVIGQDGLISLLPMVVDLIGDRDIPIIAA-GGIVDARGYV---AALSLGAQGICLGTRF 198 (332)
Q Consensus 123 a~~a~~~g~D~ivv~G~eaGGh~~~~~~~~~ll~~i~~~~~~~~iPviaa-GGI~~~~~v~---~al~~GA~gV~~GT~f 198 (332)
++...+.|+|+|++-|..+-+.......-..++..+++...+ ++|||+. |+.++.+.+. .+-++|||++++-+.+
T Consensus 31 v~~li~~Gv~gl~v~GttGE~~~Ls~~Er~~v~~~~~~~~~g-rvpviaGvg~~~t~~ai~la~~a~~~Gadavlv~~P~ 109 (300)
T 3eb2_A 31 CDDLIQAGVHGLTPLGSTGEFAYLGTAQREAVVRATIEAAQR-RVPVVAGVASTSVADAVAQAKLYEKLGADGILAILEA 109 (300)
T ss_dssp HHHHHHTTCSCBBTTSGGGTGGGCCHHHHHHHHHHHHHHHTT-SSCBEEEEEESSHHHHHHHHHHHHHHTCSEEEEEECC
T ss_pred HHHHHHcCCCEEEECccccCccccCHHHHHHHHHHHHHHhCC-CCcEEEeCCCCCHHHHHHHHHHHHHcCCCEEEEcCCC
Confidence 445668899999986654333321112234566666666643 6898764 4444433332 3445899999999988
Q ss_pred ccCc-cCCCCHHHHHHHhcCCCceEEEEecccCCCCCCceeecChHHHhhhc
Q 020013 199 VASE-ESYAHPEYKRKLVEMDKTEYTDVFGRARWPGAPHRVLQTPFFSNWKN 249 (332)
Q Consensus 199 l~t~-Es~~~~~~k~~~~~~~~t~~t~~~~~~~~~g~~~R~l~n~~~~~~~~ 249 (332)
.... +...-+ |=+.|.++.+.- ..+++ .|++.+.-+...++.++.+
T Consensus 110 y~~~~~~~l~~-~f~~va~a~~lP-iilYn---~P~~tg~~l~~~~~~~La~ 156 (300)
T 3eb2_A 110 YFPLKDAQIES-YFRAIADAVEIP-VVIYT---NPQFQRSDLTLDVIARLAE 156 (300)
T ss_dssp SSCCCHHHHHH-HHHHHHHHCSSC-EEEEE---CTTTCSSCCCHHHHHHHHT
T ss_pred CCCCCHHHHHH-HHHHHHHHCCCC-EEEEE---CccccCCCCCHHHHHHHHc
Confidence 7642 111122 223344444433 23454 3566666677666666543
|
| >1zco_A 2-dehydro-3-deoxyphosphoheptonate aldolase; arabino-heptulosonate, synthase, shikimate, DAHP, DAH7P, DAH DAH7PS, lyase; HET: PEP; 2.25A {Pyrococcus furiosus} | Back alignment and structure |
|---|
Probab=93.34 E-value=4 Score=35.99 Aligned_cols=138 Identities=20% Similarity=0.192 Sum_probs=84.3
Q ss_pred HHHHHHHhhcCCcEEEEeecCCCCHHHHHHHHhcCCcEEEEccCC-CcHHHHHHHHhCCCEEEEecC---CHHHHHHHH-
Q 020013 53 DLIRKTRSLTERPFGVGVVLAFPHNENIKAILSEKVAVLQVSWGE-YSEELVLEAHSAGVKVVPQVG---SFDEARKAV- 127 (332)
Q Consensus 53 ~~i~~~r~~~~~p~gvnl~~~~~~~~~~~~~~~~~~~~I~~~~g~-~~~~~i~~~~~~g~~v~~~v~---s~~~a~~a~- 127 (332)
++++++++..+.|+..-++- ...++.+.+. +|++.++.+. ....+++.+-+.+.+|+.+-+ ++++...+.
T Consensus 77 ~~l~~~~~~~Gl~~~te~~d----~~~~~~l~~~-vd~~kIga~~~~n~~ll~~~a~~~kPV~lk~G~~~t~~e~~~Av~ 151 (262)
T 1zco_A 77 RWMREAADEYGLVTVTEVMD----TRHVELVAKY-SDILQIGARNSQNFELLKEVGKVENPVLLKRGMGNTIQELLYSAE 151 (262)
T ss_dssp HHHHHHHHHHTCEEEEECCC----GGGHHHHHHH-CSEEEECGGGTTCHHHHHHHTTSSSCEEEECCTTCCHHHHHHHHH
T ss_pred HHHHHHHHHcCCcEEEeeCC----HHhHHHHHhh-CCEEEECcccccCHHHHHHHHhcCCcEEEecCCCCCHHHHHHHHH
Confidence 34444545556777665443 4567777777 9999997543 234567777778899886643 788877665
Q ss_pred ---HcCC-CEEEEe-cCCCC-cccCCCCchhhhHHHHHHHhCCCCCcEEee----cCcCC--HHHHHHHHHcCcceeeec
Q 020013 128 ---NAGV-DAIIVQ-GREAG-GHVIGQDGLISLLPMVVDLIGDRDIPIIAA----GGIVD--ARGYVAALSLGAQGICLG 195 (332)
Q Consensus 128 ---~~g~-D~ivv~-G~eaG-Gh~~~~~~~~~ll~~i~~~~~~~~iPviaa----GGI~~--~~~v~~al~~GA~gV~~G 195 (332)
..|. +.++++ |.... +.. .....+..++.+++.. ++||+.. +|..+ +.-..++.++||+|+++=
T Consensus 152 ~i~~~Gn~~i~L~~RG~~~~~~y~-~~~v~L~ai~~lk~~~---~~pVi~d~sH~~g~~~~v~~~~~aAva~Ga~Gl~iE 227 (262)
T 1zco_A 152 YIMAQGNENVILCERGIRTFETAT-RFTLDISAVPVVKELS---HLPIIVDPSHPAGRRSLVIPLAKAAYAIGADGIMVE 227 (262)
T ss_dssp HHHTTTCCCEEEEECCBCCSCCSS-SSBCCTTHHHHHHHHB---SSCEEECSSTTTCSGGGHHHHHHHHHHTTCSEEEEE
T ss_pred HHHHCCCCeEEEEECCCCCCCCcC-hhhcCHHHHHHHHhhh---CCCEEEEcCCCCCccchHHHHHHHHHHcCCCEEEEE
Confidence 3464 666664 31110 111 1123456677777765 6898653 33311 022456788999999998
Q ss_pred cccc
Q 020013 196 TRFV 199 (332)
Q Consensus 196 T~fl 199 (332)
+-|-
T Consensus 228 ~H~~ 231 (262)
T 1zco_A 228 VHPE 231 (262)
T ss_dssp BCSS
T ss_pred ecCC
Confidence 8764
|
| >3na8_A Putative dihydrodipicolinate synthetase; lyase; HET: MSE; 1.85A {Pseudomonas aeruginosa} | Back alignment and structure |
|---|
Probab=93.27 E-value=0.13 Score=46.98 Aligned_cols=119 Identities=16% Similarity=0.168 Sum_probs=65.6
Q ss_pred HHHHHHcCCCEEEEecCCCCcccCCCCchhhhHHHHHHHhCCCCCcEEeecCcCCHHHHH----HHHHcCcceeeecccc
Q 020013 123 ARKAVNAGVDAIIVQGREAGGHVIGQDGLISLLPMVVDLIGDRDIPIIAAGGIVDARGYV----AALSLGAQGICLGTRF 198 (332)
Q Consensus 123 a~~a~~~g~D~ivv~G~eaGGh~~~~~~~~~ll~~i~~~~~~~~iPviaaGGI~~~~~v~----~al~~GA~gV~~GT~f 198 (332)
++...+.|+|+|++-|..+-+.......-..++..+++...+ ++|||+.=|=.+-++.. .+-.+|||++++-+.+
T Consensus 51 v~~li~~Gv~Gi~v~GtTGE~~~Ls~~Er~~v~~~~v~~~~g-rvpViaGvg~~~t~~ai~la~~A~~~Gadavlv~~P~ 129 (315)
T 3na8_A 51 IERLIDGGVHAIAPLGSTGEGAYLSDPEWDEVVDFTLKTVAH-RVPTIVSVSDLTTAKTVRRAQFAESLGAEAVMVLPIS 129 (315)
T ss_dssp HHHHHHTTCSEEECSSGGGTGGGSCHHHHHHHHHHHHHHHTT-SSCBEEECCCSSHHHHHHHHHHHHHTTCSEEEECCCC
T ss_pred HHHHHHcCCCEEEECccccChhhCCHHHHHHHHHHHHHHhCC-CCcEEEecCCCCHHHHHHHHHHHHhcCCCEEEECCCC
Confidence 445668899999997664333321112234566666666643 68988754432444433 3446899999999988
Q ss_pred ccCc-cCCCCHHHHHHHhcCCCceEEEEecccCCCCCCceeecChHHHhh
Q 020013 199 VASE-ESYAHPEYKRKLVEMDKTEYTDVFGRARWPGAPHRVLQTPFFSNW 247 (332)
Q Consensus 199 l~t~-Es~~~~~~k~~~~~~~~t~~t~~~~~~~~~g~~~R~l~n~~~~~~ 247 (332)
.... +...-+ |=+.|.++.+.- ..+++ .|++.+.-+...++.++
T Consensus 130 y~~~s~~~l~~-~f~~va~a~~lP-iilYn---~P~~tg~~l~~~~~~~L 174 (315)
T 3na8_A 130 YWKLNEAEVFQ-HYRAVGEAIGVP-VMLYN---NPGTSGIDMSVELILRI 174 (315)
T ss_dssp SSCCCHHHHHH-HHHHHHHHCSSC-EEEEE---CHHHHSCCCCHHHHHHH
T ss_pred CCCCCHHHHHH-HHHHHHHhCCCc-EEEEe---CcchhCcCCCHHHHHHH
Confidence 7642 111112 223333343433 23443 23444445665666665
|
| >1o5k_A DHDPS, dihydrodipicolinate synthase; TM1521, structural genomics, J protein structure initiative, joint center for structural G lyase; HET: MCL; 1.80A {Thermotoga maritima} SCOP: c.1.10.1 PDB: 3pb2_A 3pb0_A | Back alignment and structure |
|---|
Probab=93.27 E-value=0.21 Score=45.35 Aligned_cols=78 Identities=24% Similarity=0.439 Sum_probs=48.6
Q ss_pred HHHHHHcCCCEEEEecCCCCcccCCCCchhhhHHHHHHHhCCCCCcEEeecCcCCHHHHH----HHHHcCcceeeecccc
Q 020013 123 ARKAVNAGVDAIIVQGREAGGHVIGQDGLISLLPMVVDLIGDRDIPIIAAGGIVDARGYV----AALSLGAQGICLGTRF 198 (332)
Q Consensus 123 a~~a~~~g~D~ivv~G~eaGGh~~~~~~~~~ll~~i~~~~~~~~iPviaaGGI~~~~~v~----~al~~GA~gV~~GT~f 198 (332)
++...+.|+|+|++-|..+-+.......-..++..+++...+ ++|||+.=|=.+-+++. .+-++|||++++-+.+
T Consensus 39 v~~li~~Gv~gl~v~GtTGE~~~Ls~eEr~~vi~~~~~~~~g-rvpViaGvg~~st~~ai~la~~A~~~Gadavlv~~P~ 117 (306)
T 1o5k_A 39 VRYQLENGVNALIVLGTTGESPTVNEDEREKLVSRTLEIVDG-KIPVIVGAGTNSTEKTLKLVKQAEKLGANGVLVVTPY 117 (306)
T ss_dssp HHHHHHTTCCEEEESSGGGTGGGCCHHHHHHHHHHHHHHHTT-SSCEEEECCCSCHHHHHHHHHHHHHHTCSEEEEECCC
T ss_pred HHHHHHcCCCEEEeCccccchhhCCHHHHHHHHHHHHHHhCC-CCeEEEcCCCccHHHHHHHHHHHHhcCCCEEEECCCC
Confidence 445668899999997664333321212234566666666643 68987544432434433 3345899999999998
Q ss_pred ccC
Q 020013 199 VAS 201 (332)
Q Consensus 199 l~t 201 (332)
...
T Consensus 118 y~~ 120 (306)
T 1o5k_A 118 YNK 120 (306)
T ss_dssp SSC
T ss_pred CCC
Confidence 754
|
| >2vxn_A Triosephosphate isomerase; fatty acid biosynthesis, transition state analogue, glycolysis, pentose shunt, gluconeogenesis, TIM, glycosome; HET: PGH PGA; 0.82A {Leishmania mexicana} PDB: 1if2_A* 1qds_A 1n55_A* 2y61_A 2y62_A 2y63_A 1amk_A 1tpf_A 1iig_A 1ag1_O* 1iih_A 1tpd_A 1trd_A* 2v5l_A 4tim_A* 5tim_A 6tim_A* | Back alignment and structure |
|---|
Probab=93.25 E-value=0.61 Score=41.01 Aligned_cols=117 Identities=21% Similarity=0.279 Sum_probs=70.5
Q ss_pred HHHHHHhcCCcEEEEc-------cCCCcHH----HHHHHHhCCCEEEEecCCHHHHH--------------HHHHcCC--
Q 020013 79 NIKAILSEKVAVLQVS-------WGEYSEE----LVLEAHSAGVKVVPQVGSFDEAR--------------KAVNAGV-- 131 (332)
Q Consensus 79 ~~~~~~~~~~~~I~~~-------~g~~~~~----~i~~~~~~g~~v~~~v~s~~~a~--------------~a~~~g~-- 131 (332)
....+.+.|++++.++ |+. ..+ -++.+.+.|+.++..++...+-+ ..+ .+.
T Consensus 80 S~~mL~d~G~~~ViiGHSERR~~f~E-td~~v~~Kv~~Al~~GL~pI~CvGEtleere~g~t~~vv~~Ql~~~l-~~~~~ 157 (251)
T 2vxn_A 80 SMPILKDIGVHWVILGHSERRTYYGE-TDEIVAQKVSEACKQGFMVIACIGETLQQREANQTAKVVLSQTSAIA-AKLTK 157 (251)
T ss_dssp BHHHHHHTTCCEEEESCHHHHHHSCC-CHHHHHHHHHHHHHTTCEEEEEECCCHHHHHTTCHHHHHHHHHHHHH-TTCCT
T ss_pred CHHHHHHcCCCEEEECchhhhcccCC-CHHHHHHHHHHHHHCCCEEEEEcCCcHHHHhCCCHHHHHHHHHHHHH-hcCCH
Confidence 4567888999999985 454 333 23445678999988887432222 112 232
Q ss_pred ----CEEEE-ecCCCCcccCCCCch-------hhhHHHHHH-HhC---CCCCcEEeecCcCCHHHHHHHHH-cCcceeee
Q 020013 132 ----DAIIV-QGREAGGHVIGQDGL-------ISLLPMVVD-LIG---DRDIPIIAAGGIVDARGYVAALS-LGAQGICL 194 (332)
Q Consensus 132 ----D~ivv-~G~eaGGh~~~~~~~-------~~ll~~i~~-~~~---~~~iPviaaGGI~~~~~v~~al~-~GA~gV~~ 194 (332)
..+|+ +..-+=|. |...+ ...+++... .+. ..+++|+..|+| +++|+.+.+. .+.||+.+
T Consensus 158 ~~~~~~vIAYEPvWAIGT--G~~Atpe~a~evh~~IR~~l~~~~~~~~a~~vrIlYGGSV-~~~N~~~l~~~~diDG~LV 234 (251)
T 2vxn_A 158 DAWNQVVLAYEPVWAIGT--GKVATPEQAQEVHLLLRKWVSENIGTDVAAKLRILYGGSV-NAANAATLYAKPDINGFLV 234 (251)
T ss_dssp GGGGGEEEEECCGGGSSS--SCCCCHHHHHHHHHHHHHHHHHHTCHHHHHHCEEEEESSC-CTTTHHHHHTSTTCCEEEE
T ss_pred HHhCCEEEEECCHHHhCC--CCCCCHHHHHHHHHHHHHHHHHhcChhhcccccEEEcCCc-CHhHHHHHhcCCCCCeeee
Confidence 34444 44444443 22222 222332211 110 014899999999 8899988886 68999999
Q ss_pred cccccc
Q 020013 195 GTRFVA 200 (332)
Q Consensus 195 GT~fl~ 200 (332)
|++-+.
T Consensus 235 GgAsL~ 240 (251)
T 2vxn_A 235 GGASLK 240 (251)
T ss_dssp SGGGGS
T ss_pred cHHHHH
Confidence 999876
|
| >3r8r_A Transaldolase; pentose phosphate pathway, schiff bases; 1.90A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=93.24 E-value=1.2 Score=38.08 Aligned_cols=137 Identities=18% Similarity=0.151 Sum_probs=85.4
Q ss_pred HHHHHHHHhhcCCcEEEEeecCCCCHHHHHH---HHhcCCcEEE-EccCCCcHHHHHHHHhCCCEEEEe-cCCHHHHHHH
Q 020013 52 RDLIRKTRSLTERPFGVGVVLAFPHNENIKA---ILSEKVAVLQ-VSWGEYSEELVLEAHSAGVKVVPQ-VGSFDEARKA 126 (332)
Q Consensus 52 ~~~i~~~r~~~~~p~gvnl~~~~~~~~~~~~---~~~~~~~~I~-~~~g~~~~~~i~~~~~~g~~v~~~-v~s~~~a~~a 126 (332)
.+.++++.+..+.|+.+-++.. ..+..++. +.+....++. +..-..--+.++.+.+.|+++-.+ +-|..++..+
T Consensus 41 ~~~~~eI~~~v~G~Vs~EV~a~-d~e~mi~ea~~l~~~~~nv~IKIP~T~eGl~A~~~L~~~GI~vn~TlifS~~Qa~~A 119 (212)
T 3r8r_A 41 HDRLREITDVVKGSVSAEVISL-KAEEMIEEGKELAKIAPNITVKIPMTSDGLKAVRALTDLGIKTNVTLIFNANQALLA 119 (212)
T ss_dssp HHHHHHHHHHCCSCEEEECCCS-SHHHHHHHHHHHHTTCTTEEEEEESSHHHHHHHHHHHHTTCCEEEEEECSHHHHHHH
T ss_pred HHHHHHHHHhcCCCEEEEEecC-CHHHHHHHHHHHHHhCCCEEEEeCCCHHHHHHHHHHHHCCCcEEEEEeCCHHHHHHH
Confidence 3455666666677888777432 22333333 3344455442 332111125677888899998654 6799999999
Q ss_pred HHcCCCEEEE-ecC--CCCcccCCCCchhhhHHHHHHHhCCC-CCcEEeecCcCCHHHHHHHHHcCcceeeec
Q 020013 127 VNAGVDAIIV-QGR--EAGGHVIGQDGLISLLPMVVDLIGDR-DIPIIAAGGIVDARGYVAALSLGAQGICLG 195 (332)
Q Consensus 127 ~~~g~D~ivv-~G~--eaGGh~~~~~~~~~ll~~i~~~~~~~-~iPviaaGGI~~~~~v~~al~~GA~gV~~G 195 (332)
.++|+++|-. -|+ +. |+ ..+.++.++.+.++.. --..|.+-.+.+..++.++..+|||.+-+.
T Consensus 120 a~AGa~yISPfvgRi~d~-~~-----dG~~~v~~i~~~~~~~~~~t~ilaAS~R~~~~v~~~a~~G~d~~Tip 186 (212)
T 3r8r_A 120 ARAGATYVSPFLGRLDDI-GH-----NGLDLISEVKQIFDIHGLDTQIIAASIRHPQHVTEAALRGAHIGTMP 186 (212)
T ss_dssp HHHTCSEEEEBHHHHHHT-TS-----CHHHHHHHHHHHHHHHTCCCEEEEBSCCSHHHHHHHHHTTCSEEEEC
T ss_pred HHcCCeEEEeccchhhhc-CC-----ChHHHHHHHHHHHHHcCCCCEEEEecCCCHHHHHHHHHcCCCEEEcC
Confidence 9999999865 232 11 11 2355666666554311 134566677889999999999999987763
|
| >2v5j_A 2,4-dihydroxyhept-2-ENE-1,7-dioic acid aldolase; lyase, class II aldolase, homoprotocatechuate, aromatic DEGR aromatic hydrocarbons catabolism; 1.60A {Escherichia coli} PDB: 2v5k_A | Back alignment and structure |
|---|
Probab=93.23 E-value=3.7 Score=36.71 Aligned_cols=170 Identities=15% Similarity=0.101 Sum_probs=96.5
Q ss_pred CCCcHHHHHHHHhCCCceeec--CCC-CCCHHHHHHHHHHHHhhcCCcEEEEeecCCCCHHHHHHHHhcCCcEEEEccCC
Q 020013 21 DISGPELVAAVANAGGLGLLR--APD-WEAPDYLRDLIRKTRSLTERPFGVGVVLAFPHNENIKAILSEKVAVLQVSWGE 97 (332)
Q Consensus 21 g~s~~~la~avs~aGglG~i~--~~~-~~~~e~~~~~i~~~r~~~~~p~gvnl~~~~~~~~~~~~~~~~~~~~I~~~~g~ 97 (332)
..++|+.+..+..+|. .++. ... -...+.+...++.+.. .+.+.-|-+ +..+...++.+++.+++.|.+..=.
T Consensus 46 ~~~~p~~~e~a~~~Ga-D~v~lDlEh~~~~~~~~~~~l~a~~~-~~~~~~VRv--~~~d~~di~~~ld~ga~~ImlP~V~ 121 (287)
T 2v5j_A 46 GLSSSYSAELLAGAGF-DWLLIDGEHAPNNVQTVLTQLQAIAP-YPSQPVVRP--SWNDPVQIKQLLDVGTQTLLVPMVQ 121 (287)
T ss_dssp CSCCHHHHHHHHTSCC-SEEEEESSSSSCCHHHHHHHHHHHTT-SSSEEEEEC--SSSCHHHHHHHHHTTCCEEEESCCC
T ss_pred ECCCHHHHHHHHhCCC-CEEEEeCCCccchHHHHHHHHHHHHh-cCCCEEEEE--CCCCHHHHHHHHhCCCCEEEeCCCC
Confidence 3578888888877774 3332 221 1234445544444432 234444443 2334557888889999999887533
Q ss_pred CcHHHHHHHHh---------------------------------CCCEEEEecCCHHHHHHHH---H-cCCCEEEEecC-
Q 020013 98 YSEELVLEAHS---------------------------------AGVKVVPQVGSFDEARKAV---N-AGVDAIIVQGR- 139 (332)
Q Consensus 98 ~~~~~i~~~~~---------------------------------~g~~v~~~v~s~~~a~~a~---~-~g~D~ivv~G~- 139 (332)
.+.+ ++.+.+ ..+.++..+-+++-+..+. . .|+|+|.+-..
T Consensus 122 saee-a~~~~~~~~~~p~G~Rg~g~~~~ra~~~g~~~~y~~~~~~~~~vi~mIEt~~av~n~deIaa~~~vD~l~iG~~D 200 (287)
T 2v5j_A 122 NADE-AREAVRATRYPPAGIRGVGSALARASRWNRIPDYLQKANDQMCVLVQIETREAMKNLPQILDVEGVDGVFIGPAD 200 (287)
T ss_dssp SHHH-HHHHHHHTSCTTTSCCCGGGTTTGGGTTTTSTTHHHHHHHHCEEEEEECSHHHHHTHHHHHTSTTEEEEEECHHH
T ss_pred CHHH-HHHHHHHhccCccCccccccchhhhhhccchhhhHhhcCCCcEEEEEECcHHHHHHHHHHhCcCCCCEEEECHHH
Confidence 3333 333321 0267888888876554432 2 27899887211
Q ss_pred ---CCCcccCCC--CchhhhHHHHHHHhCCCCCcEEeecCcCCHHHHHHHHHcCcceeeecccc
Q 020013 140 ---EAGGHVIGQ--DGLISLLPMVVDLIGDRDIPIIAAGGIVDARGYVAALSLGAQGICLGTRF 198 (332)
Q Consensus 140 ---eaGGh~~~~--~~~~~ll~~i~~~~~~~~iPviaaGGI~~~~~v~~al~~GA~gV~~GT~f 198 (332)
+. |+.+.. ......+.++..+.+..++|+.... .+++.+..++.+|++.+.+|+-.
T Consensus 201 Ls~~l-g~~~~~~~p~v~~a~~~iv~aaraaG~~~gv~~--~d~~~a~~~~~~G~~~~s~~~d~ 261 (287)
T 2v5j_A 201 LSADM-GYAGNPQHPEVQAAIEQAIVQIRESGKAPGILI--ANEQLAKRYLELGALFVAVGVDT 261 (287)
T ss_dssp HHHHT-TSTTCCCSHHHHHHHHHHHHHHHHTTSEEEEEC--CCHHHHHHHHHTTCSEEEEEEHH
T ss_pred HHHHh-CCCCCCCCHHHHHHHHHHHHHHHHcCCeeEEec--CCHHHHHHHHHhCCCEEEECcHH
Confidence 11 222111 1233444555444322357764433 38899999999999999999753
|
| >3eul_A Possible nitrate/nitrite response transcriptional regulatory protein NARL (DNA-binding...; central beta strand flanked by alpha helices; 1.90A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=93.22 E-value=1 Score=35.16 Aligned_cols=83 Identities=18% Similarity=0.096 Sum_probs=59.3
Q ss_pred HHHHhCC-CEEEEecCCHHHHHHHH-HcCCCEEEEecCCCCcccCCCCchhhhHHHHHHHhCCCCCcEEeecCcCCHHHH
Q 020013 104 LEAHSAG-VKVVPQVGSFDEARKAV-NAGVDAIIVQGREAGGHVIGQDGLISLLPMVVDLIGDRDIPIIAAGGIVDARGY 181 (332)
Q Consensus 104 ~~~~~~g-~~v~~~v~s~~~a~~a~-~~g~D~ivv~G~eaGGh~~~~~~~~~ll~~i~~~~~~~~iPviaaGGI~~~~~v 181 (332)
+.+.+.| ..++..+.+.+++.... +..+|.|++.-.-.+ ...+.++..+++... .+|||+-.+-.+.+.+
T Consensus 33 ~~L~~~~~~~~v~~~~~~~~a~~~l~~~~~dlii~d~~l~~------~~g~~~~~~l~~~~~--~~~ii~~s~~~~~~~~ 104 (152)
T 3eul_A 33 RALSLSGSVNVVGEADDGAAALELIKAHLPDVALLDYRMPG------MDGAQVAAAVRSYEL--PTRVLLISAHDEPAIV 104 (152)
T ss_dssp HHHHHHSSEEEEEEESSHHHHHHHHHHHCCSEEEEETTCSS------SCHHHHHHHHHHTTC--SCEEEEEESCCCHHHH
T ss_pred HHHhhCCCeEEEEEeCCHHHHHHHHHhcCCCEEEEeCCCCC------CCHHHHHHHHHhcCC--CCeEEEEEccCCHHHH
Confidence 3444555 45566788888887654 567999998533211 234677888876543 6899998888899999
Q ss_pred HHHHHcCcceeee
Q 020013 182 VAALSLGAQGICL 194 (332)
Q Consensus 182 ~~al~~GA~gV~~ 194 (332)
.+++.+||+++..
T Consensus 105 ~~~~~~g~~~~l~ 117 (152)
T 3eul_A 105 YQALQQGAAGFLL 117 (152)
T ss_dssp HHHHHTTCSEEEE
T ss_pred HHHHHcCCCEEEe
Confidence 9999999998764
|
| >2bdq_A Copper homeostasis protein CUTC; alpha beta protein, structural genomics, PSI, protein structure initiative; 2.30A {Streptococcus agalactiae} | Back alignment and structure |
|---|
Probab=93.18 E-value=0.062 Score=46.42 Aligned_cols=98 Identities=12% Similarity=0.170 Sum_probs=66.3
Q ss_pred ecCCHHHHHHHHHcCCCEEEE-ecCCCCcccCCCCchhhhHHHHH---HHhCCCCCcEEe-----ecCcCCH--------
Q 020013 116 QVGSFDEARKAVNAGVDAIIV-QGREAGGHVIGQDGLISLLPMVV---DLIGDRDIPIIA-----AGGIVDA-------- 178 (332)
Q Consensus 116 ~v~s~~~a~~a~~~g~D~ivv-~G~eaGGh~~~~~~~~~ll~~i~---~~~~~~~iPvia-----aGGI~~~-------- 178 (332)
.+.|++.+..|++.|+|-|=+ .+...||.+ +++.++..++ +.+ ++||.+ .|+....
T Consensus 7 c~~s~~~a~~A~~~GAdRIELc~~L~~GGlT----PS~g~i~~~~~~~~~~---~ipV~vMIRPR~GdF~Ys~~E~~~M~ 79 (224)
T 2bdq_A 7 CAENLTDLTRLDKAIISRVELCDNLAVGGTT----PSYGVIKEANQYLHEK---GISVAVMIRPRGGNFVYNDLELRIME 79 (224)
T ss_dssp EEETTTTGGGCCTTTCCEEEEEBCGGGTCBC----CCHHHHHHHHHHHHHT---TCEEEEECCSSSSCSCCCHHHHHHHH
T ss_pred EECCHHHHHHHHHcCCCEEEEcCCcccCCcC----CCHHHHHHHHHhhhhc---CCceEEEECCCCCCCcCCHHHHHHHH
Confidence 456788899999999999976 444556654 4566777776 666 788765 3444332
Q ss_pred HHHHHHHHcCcceeeeccccccCccCCCCHHHHHHHhc-CCCceEE
Q 020013 179 RGYVAALSLGAQGICLGTRFVASEESYAHPEYKRKLVE-MDKTEYT 223 (332)
Q Consensus 179 ~~v~~al~~GA~gV~~GT~fl~t~Es~~~~~~k~~~~~-~~~t~~t 223 (332)
+|+..+.++|||||++|-- +++-.+....-+.+++ +++...|
T Consensus 80 ~Di~~~~~~GadGvV~G~L---t~dg~iD~~~~~~Li~~a~~~~vT 122 (224)
T 2bdq_A 80 EDILRAVELESDALVLGIL---TSNNHIDTEAIEQLLPATQGLPLV 122 (224)
T ss_dssp HHHHHHHHTTCSEEEECCB---CTTSSBCHHHHHHHHHHHTTCCEE
T ss_pred HHHHHHHHcCCCEEEEeeE---CCCCCcCHHHHHHHHHHhCCCeEE
Confidence 3566777899999999943 6666677666555555 4554433
|
| >1tmy_A CHEY protein, TMY; chemotaxis, phosphoryl transfer, signal transduction; 1.90A {Thermotoga maritima} SCOP: c.23.1.1 PDB: 2tmy_A 3tmy_A 4tmy_A 1u0s_Y | Back alignment and structure |
|---|
Probab=93.16 E-value=1.7 Score=32.01 Aligned_cols=83 Identities=14% Similarity=0.103 Sum_probs=58.8
Q ss_pred HHHHhCCCEEEEecCCHHHHHHHH-HcCCCEEEEecCCCCcccCCCCchhhhHHHHHHHhCCCCCcEEeecCcCCHHHHH
Q 020013 104 LEAHSAGVKVVPQVGSFDEARKAV-NAGVDAIIVQGREAGGHVIGQDGLISLLPMVVDLIGDRDIPIIAAGGIVDARGYV 182 (332)
Q Consensus 104 ~~~~~~g~~v~~~v~s~~~a~~a~-~~g~D~ivv~G~eaGGh~~~~~~~~~ll~~i~~~~~~~~iPviaaGGI~~~~~v~ 182 (332)
+.++..|..++..+.+.+++.... +..+|.|++.-.-.+ ...+.++.++++..+ ++|+|.-.+-.+.+...
T Consensus 20 ~~l~~~g~~vv~~~~~~~~a~~~~~~~~~dlil~D~~l~~------~~g~~~~~~l~~~~~--~~~ii~~s~~~~~~~~~ 91 (120)
T 1tmy_A 20 DIITKAGYEVAGEATNGREAVEKYKELKPDIVTMDITMPE------MNGIDAIKEIMKIDP--NAKIIVCSAMGQQAMVI 91 (120)
T ss_dssp HHHHHTTCEEEEEESSHHHHHHHHHHHCCSEEEEECSCGG------GCHHHHHHHHHHHCT--TCCEEEEECTTCHHHHH
T ss_pred HHHhhcCcEEEEEECCHHHHHHHHHhcCCCEEEEeCCCCC------CcHHHHHHHHHhhCC--CCeEEEEeCCCCHHHHH
Confidence 445567888777788888776654 457999998532111 123567777776532 68999888888888899
Q ss_pred HHHHcCcceeee
Q 020013 183 AALSLGAQGICL 194 (332)
Q Consensus 183 ~al~~GA~gV~~ 194 (332)
+++..||+++..
T Consensus 92 ~~~~~g~~~~l~ 103 (120)
T 1tmy_A 92 EAIKAGAKDFIV 103 (120)
T ss_dssp HHHHTTCCEEEE
T ss_pred HHHHhCcceeEe
Confidence 999999998653
|
| >3cz5_A Two-component response regulator, LUXR family; structural genomics, protein structure initiative; 2.70A {Aurantimonas SP} | Back alignment and structure |
|---|
Probab=93.14 E-value=1 Score=35.11 Aligned_cols=82 Identities=17% Similarity=0.112 Sum_probs=59.2
Q ss_pred HHHh-CCCEEEEecCCHHHHHHHHH-cCCCEEEEecCCCCcccCCCCchhhhHHHHHHHhCCCCCcEEeecCcCCHHHHH
Q 020013 105 EAHS-AGVKVVPQVGSFDEARKAVN-AGVDAIIVQGREAGGHVIGQDGLISLLPMVVDLIGDRDIPIIAAGGIVDARGYV 182 (332)
Q Consensus 105 ~~~~-~g~~v~~~v~s~~~a~~a~~-~g~D~ivv~G~eaGGh~~~~~~~~~ll~~i~~~~~~~~iPviaaGGI~~~~~v~ 182 (332)
.+.+ .|..++..+.+.+++..... ..+|.|++.-.-. ....+.++..+++... .+|||+-.+-.+.+...
T Consensus 24 ~L~~~~~~~v~~~~~~~~~a~~~l~~~~~dlii~D~~l~------~~~g~~~~~~l~~~~~--~~~ii~ls~~~~~~~~~ 95 (153)
T 3cz5_A 24 LIERRPGYAVVAEAADAGEAYRLYRETTPDIVVMDLTLP------GPGGIEATRHIRQWDG--AARILIFTMHQGSAFAL 95 (153)
T ss_dssp HHTTSTTEEEEEEESSHHHHHHHHHTTCCSEEEECSCCS------SSCHHHHHHHHHHHCT--TCCEEEEESCCSHHHHH
T ss_pred HHhhCCCcEEEEEeCCHHHHHHHHhcCCCCEEEEecCCC------CCCHHHHHHHHHHhCC--CCeEEEEECCCCHHHHH
Confidence 3444 57777767888888876654 4689999853211 1234677888877643 68999888888889999
Q ss_pred HHHHcCcceeee
Q 020013 183 AALSLGAQGICL 194 (332)
Q Consensus 183 ~al~~GA~gV~~ 194 (332)
.++.+||+++..
T Consensus 96 ~~~~~g~~~~l~ 107 (153)
T 3cz5_A 96 KAFEAGASGYVT 107 (153)
T ss_dssp HHHHTTCSEEEE
T ss_pred HHHHCCCcEEEe
Confidence 999999998764
|
| >3zwt_A Dihydroorotate dehydrogenase (quinone), mitochond; oxidoreductase; HET: FMN ORO KFZ; 1.55A {Homo sapiens} PDB: 1d3h_A* 2bxv_A* 2prh_A* 2prl_A* 2prm_A* 3f1q_A* 3fj6_A* 3fjl_A* 3g0u_A* 3g0x_A* 3zws_A* 1d3g_A* 3u2o_A* 2fpv_A* 2fpt_A* 2fpy_A* 2fqi_A* 3kvl_A* 3kvk_A* 3kvj_A* ... | Back alignment and structure |
|---|
Probab=93.12 E-value=0.65 Score=43.24 Aligned_cols=90 Identities=17% Similarity=0.139 Sum_probs=63.0
Q ss_pred CHHHHHHHHHHHHhh-------cCCcEEEEeecCCCC---HHHHHHHHhcCCcEEEEccCC-------------------
Q 020013 47 APDYLRDLIRKTRSL-------TERPFGVGVVLAFPH---NENIKAILSEKVAVLQVSWGE------------------- 97 (332)
Q Consensus 47 ~~e~~~~~i~~~r~~-------~~~p~gvnl~~~~~~---~~~~~~~~~~~~~~I~~~~g~------------------- 97 (332)
+++.+.++++.+++. ++.|+.|.+-..... .+..+.+.+.|+|.|.++...
T Consensus 197 ~~~~l~~ll~av~~~~~~~~~~~~~Pv~vKi~p~~~~~~~~~ia~~~~~aGadgi~v~ntt~~r~~~~~~~~~~~~gGlS 276 (367)
T 3zwt_A 197 GKAELRRLLTKVLQERDGLRRVHRPAVLVKIAPDLTSQDKEDIASVVKELGIDGLIVTNTTVSRPAGLQGALRSETGGLS 276 (367)
T ss_dssp SHHHHHHHHHHHHHHHHTSCGGGCCEEEEEECSCCCHHHHHHHHHHHHHHTCCEEEECCCBSCCCTTCCCTTTTSSSEEE
T ss_pred CHHHHHHHHHHHHHHHhhccccCCceEEEEeCCCCCHHHHHHHHHHHHHcCCCEEEEeCCCcccccccccccccccCCcC
Confidence 467777888877653 578999987654432 234566778999999876210
Q ss_pred -C-----cHHHHHHHHhC---CCEEEE--ecCCHHHHHHHHHcCCCEEEE
Q 020013 98 -Y-----SEELVLEAHSA---GVKVVP--QVGSFDEARKAVNAGVDAIIV 136 (332)
Q Consensus 98 -~-----~~~~i~~~~~~---g~~v~~--~v~s~~~a~~a~~~g~D~ivv 136 (332)
+ ..++++.+++. .++|+. .+.|.+++.+..+.|+|.|.+
T Consensus 277 G~~i~p~a~~~v~~i~~~v~~~ipvI~~GGI~s~~da~~~l~~GAd~V~v 326 (367)
T 3zwt_A 277 GKPLRDLSTQTIREMYALTQGRVPIIGVGGVSSGQDALEKIRAGASLVQL 326 (367)
T ss_dssp EGGGHHHHHHHHHHHHHHTTTCSCEEEESSCCSHHHHHHHHHHTCSEEEE
T ss_pred CcccchhHHHHHHHHHHHcCCCceEEEECCCCCHHHHHHHHHcCCCEEEE
Confidence 0 01456666653 577774 478999999999999999987
|
| >3ble_A Citramalate synthase from leptospira interrogans; TIM barrel, licmsn, substrate specificity, acyltransferase, amino-acid biosynthesis; 2.00A {Leptospira interrogans} PDB: 3blf_A 3bli_A* | Back alignment and structure |
|---|
Probab=93.10 E-value=4.1 Score=37.23 Aligned_cols=111 Identities=13% Similarity=0.120 Sum_probs=74.2
Q ss_pred HHHHHHHhcCCcEEEEccCCC-----------c-------HHHHHHHHhCCCEEEEecCC--------HH----HHHHHH
Q 020013 78 ENIKAILSEKVAVLQVSWGEY-----------S-------EELVLEAHSAGVKVVPQVGS--------FD----EARKAV 127 (332)
Q Consensus 78 ~~~~~~~~~~~~~I~~~~g~~-----------~-------~~~i~~~~~~g~~v~~~v~s--------~~----~a~~a~ 127 (332)
..++.+.+.+++.|.+..... . .+.++.+++.|.++...+.+ ++ .++.+.
T Consensus 100 ~~i~~a~~~g~~~v~i~~~~s~~~~~~~~~~s~~e~l~~~~~~v~~ak~~G~~v~~~~~~~~~~~~~~~~~~~~~~~~~~ 179 (337)
T 3ble_A 100 KTVDWIKDSGAKVLNLLTKGSLHHLEKQLGKTPKEFFTDVSFVIEYAIKSGLKINVYLEDWSNGFRNSPDYVKSLVEHLS 179 (337)
T ss_dssp HHHHHHHHHTCCEEEEEEECSHHHHHHHTCCCHHHHHHHHHHHHHHHHHTTCEEEEEEETHHHHHHHCHHHHHHHHHHHH
T ss_pred hhHHHHHHCCCCEEEEEEecCHHHHHHHhCCCHHHHHHHHHHHHHHHHHCCCEEEEEEEECCCCCcCCHHHHHHHHHHHH
Confidence 368888999999987653211 1 13345567889988766544 33 345677
Q ss_pred HcCCCEEEEecCCCCcccCCCCchhhhHHHHHHHhCCCCCcEEee----cCcCCHHHHHHHHHcCcceeee
Q 020013 128 NAGVDAIIVQGREAGGHVIGQDGLISLLPMVVDLIGDRDIPIIAA----GGIVDARGYVAALSLGAQGICL 194 (332)
Q Consensus 128 ~~g~D~ivv~G~eaGGh~~~~~~~~~ll~~i~~~~~~~~iPviaa----GGI~~~~~v~~al~~GA~gV~~ 194 (332)
+.|+|.|.+--. -|.. .+.....++..+++.++ ++|+-.- -|.+ -.+..+++.+||+.|..
T Consensus 180 ~~Ga~~i~l~DT--~G~~-~P~~v~~lv~~l~~~~p--~~~i~~H~Hnd~GlA-~AN~laAv~aGa~~vd~ 244 (337)
T 3ble_A 180 KEHIERIFLPDT--LGVL-SPEETFQGVDSLIQKYP--DIHFEFHGHNDYDLS-VANSLQAIRAGVKGLHA 244 (337)
T ss_dssp TSCCSEEEEECT--TCCC-CHHHHHHHHHHHHHHCT--TSCEEEECBCTTSCH-HHHHHHHHHTTCSEEEE
T ss_pred HcCCCEEEEecC--CCCc-CHHHHHHHHHHHHHhcC--CCeEEEEecCCcchH-HHHHHHHHHhCCCEEEE
Confidence 899999988433 2221 23345677888887764 5777665 6884 57788889999997763
|
| >1m6j_A TIM, TPI, triosephosphate isomerase; asymmetry, monomer stability; 1.50A {Entamoeba histolytica} SCOP: c.1.1.1 | Back alignment and structure |
|---|
Probab=93.09 E-value=0.32 Score=43.10 Aligned_cols=119 Identities=18% Similarity=0.220 Sum_probs=70.1
Q ss_pred HHHHHHhcCCcEEEEc-------cCCCcHHH----HHHHHhCCCEEEEecCCHHHHHH--------------HH-HcC--
Q 020013 79 NIKAILSEKVAVLQVS-------WGEYSEEL----VLEAHSAGVKVVPQVGSFDEARK--------------AV-NAG-- 130 (332)
Q Consensus 79 ~~~~~~~~~~~~I~~~-------~g~~~~~~----i~~~~~~g~~v~~~v~s~~~a~~--------------a~-~~g-- 130 (332)
....+.+.|++++.++ ||. ..++ ++.+.+.|+.++..++...+-+. .+ ...
T Consensus 86 S~~mL~d~G~~~ViiGHSERR~~f~E-td~~v~~Kv~~Al~~GL~pI~CvGEtleere~g~t~~vv~~Ql~~~l~~~~~~ 164 (261)
T 1m6j_A 86 HVGMLVDCQVPYVILGHSERRQIFHE-SNEQVAEKVKVAIDAGLKVIACIGETEAQRIANQTEEVVAAQLKAINNAISKE 164 (261)
T ss_dssp BHHHHHHTTCCEEEESCHHHHHHSCC-CHHHHHHHHHHHHHHTCEEEEEECCCHHHHHTTCHHHHHHHHHHHHHHHSCTG
T ss_pred CHHHHHHcCCCEEEECchhhhcccCC-CHHHHHHHHHHHHHCCCEEEEEcCCcHHHHhCCCHHHHHHHHHHHHHhcCCHH
Confidence 4667888999999985 454 3332 33455679998888874322221 11 111
Q ss_pred --CCEEEE-ecCCCCcccCCCCch-------hhhHHHHHH-HhC---CCCCcEEeecCcCCHHHHHHHHH-cCcceeeec
Q 020013 131 --VDAIIV-QGREAGGHVIGQDGL-------ISLLPMVVD-LIG---DRDIPIIAAGGIVDARGYVAALS-LGAQGICLG 195 (332)
Q Consensus 131 --~D~ivv-~G~eaGGh~~~~~~~-------~~ll~~i~~-~~~---~~~iPviaaGGI~~~~~v~~al~-~GA~gV~~G 195 (332)
...|++ +..-+=|. |...+ ...+++... .+. ..+++|+..|+| +++|+.+.+. .+.||+.+|
T Consensus 165 ~~~~~vIAYEPvWAIGT--G~~Atpe~a~evh~~IR~~l~~~~~~~~a~~vrIlYGGSV-~~~N~~~l~~~~diDG~LVG 241 (261)
T 1m6j_A 165 AWKNIILAYEPVWAIGT--GKTATPDQAQEVHQYIRKWMTENISKEVAEATRIQYGGSV-NPANCNELAKKADIDGFLVG 241 (261)
T ss_dssp GGGGEEEEECCGGGSSS--SCCCCHHHHHHHHHHHHHHHHHHTCHHHHHHSCEEECSCC-CTTTHHHHHTSTTCCEEEES
T ss_pred HcCCEEEEECCHHHhCC--CCCCCHHHHHHHHHHHHHHHHHhhChhhcccccEEEcCCc-CHhhHHHHhcCCCCCeeEec
Confidence 134454 44444443 22222 222332211 110 014899999999 8899988886 689999999
Q ss_pred cccccC
Q 020013 196 TRFVAS 201 (332)
Q Consensus 196 T~fl~t 201 (332)
++-+..
T Consensus 242 gAsL~a 247 (261)
T 1m6j_A 242 GASLDA 247 (261)
T ss_dssp GGGGSH
T ss_pred HHHhCh
Confidence 997754
|
| >3nav_A Tryptophan synthase alpha chain; alpha subunit, structural genomics, CSG center for structural genomics of infectious diseases; 2.10A {Vibrio cholerae o1 biovar el tor} SCOP: c.1.2.4 | Back alignment and structure |
|---|
Probab=93.09 E-value=1.1 Score=39.96 Aligned_cols=122 Identities=14% Similarity=0.081 Sum_probs=79.4
Q ss_pred CccceecCCCCCC-----CCcHHHHHHHHhCCCceeecCCCCCCHHHHHHHHHHHHhhcCCcEEEEeecCCCCHHHHHHH
Q 020013 9 FEYGIVQAPLGPD-----ISGPELVAAVANAGGLGLLRAPDWEAPDYLRDLIRKTRSLTERPFGVGVVLAFPHNENIKAI 83 (332)
Q Consensus 9 ~~~Pii~apM~~g-----~s~~~la~avs~aGglG~i~~~~~~~~e~~~~~i~~~r~~~~~p~gvnl~~~~~~~~~~~~~ 83 (332)
.+.||+ -|+.. .....++..+.++|.=|+|.. . .++|+..+..+.+++. +. --+-++.+....+.++.+
T Consensus 96 ~~~Piv--lm~Y~n~v~~~g~~~f~~~~~~aGvdGvIip-D-lp~ee~~~~~~~~~~~-gl-~~I~lvap~t~~eri~~i 169 (271)
T 3nav_A 96 PETPIG--LLMYANLVYARGIDDFYQRCQKAGVDSVLIA-D-VPTNESQPFVAAAEKF-GI-QPIFIAPPTASDETLRAV 169 (271)
T ss_dssp TTSCEE--EEECHHHHHHTCHHHHHHHHHHHTCCEEEET-T-SCGGGCHHHHHHHHHT-TC-EEEEEECTTCCHHHHHHH
T ss_pred CCCCEE--EEecCcHHHHHhHHHHHHHHHHCCCCEEEEC-C-CCHHHHHHHHHHHHHc-CC-eEEEEECCCCCHHHHHHH
Confidence 456887 35311 123568999999999998865 3 4667666666666653 22 123344444446778888
Q ss_pred HhcCCcEEEE-c-c---CC---Cc---HHHHHHHHhC-CCEEEE--ecCCHHHHHHHHHcCCCEEEE
Q 020013 84 LSEKVAVLQV-S-W---GE---YS---EELVLEAHSA-GVKVVP--QVGSFDEARKAVNAGVDAIIV 136 (332)
Q Consensus 84 ~~~~~~~I~~-~-~---g~---~~---~~~i~~~~~~-g~~v~~--~v~s~~~a~~a~~~g~D~ivv 136 (332)
.+....+|.+ + . |. .+ .++++++++. .++++. .++++++++.+...|+|++|+
T Consensus 170 ~~~~~gfiY~vs~~GvTG~~~~~~~~~~~~v~~vr~~~~~Pv~vGfGIst~e~~~~~~~~gADgvIV 236 (271)
T 3nav_A 170 AQLGKGYTYLLSRAGVTGAETKANMPVHALLERLQQFDAPPALLGFGISEPAQVKQAIEAGAAGAIS 236 (271)
T ss_dssp HHHCCSCEEECCCC--------CCHHHHHHHHHHHHTTCCCEEECSSCCSHHHHHHHHHTTCSEEEE
T ss_pred HHHCCCeEEEEeccCCCCcccCCchhHHHHHHHHHHhcCCCEEEECCCCCHHHHHHHHHcCCCEEEE
Confidence 7777777764 1 1 21 12 3567777775 566664 467899999899999999999
|
| >3qvq_A Phosphodiesterase OLEI02445; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, alpha-beta hydrolase, hydrolase; HET: MSE G3P; 1.60A {Oleispira antarctica} | Back alignment and structure |
|---|
Probab=93.09 E-value=0.58 Score=40.98 Aligned_cols=59 Identities=22% Similarity=0.233 Sum_probs=47.7
Q ss_pred HHHHHHhcCCcEEEEccCCCcHHHHHHHHhCCCEEEE-ecCCHHHHHHHHHcCCCEEEEe
Q 020013 79 NIKAILSEKVAVLQVSWGEYSEELVLEAHSAGVKVVP-QVGSFDEARKAVNAGVDAIIVQ 137 (332)
Q Consensus 79 ~~~~~~~~~~~~I~~~~g~~~~~~i~~~~~~g~~v~~-~v~s~~~a~~a~~~g~D~ivv~ 137 (332)
..+.+...+++.+..++....+++++.+++.|++|.+ ++.+.++++.+.+.|+|+|+..
T Consensus 179 ~~~~~~~~~~~~i~~~~~~~~~~~v~~~~~~G~~v~~WTvn~~~~~~~l~~~GVdgIiTD 238 (252)
T 3qvq_A 179 WQERLEHLDCAGLHIHQSFFDVQQVSDIKAAGYKVLAFTINDESLALKLYNQGLDAVFSD 238 (252)
T ss_dssp HHHHHHHHTCSEEEEEGGGCCHHHHHHHHHTTCEEEEECCCCHHHHHHHHHTTCCEEEES
T ss_pred HHHHHHHcCCeEEecchhhCCHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHcCCCEEEeC
Confidence 3445556788888877655567899999999999875 5788999999999999999873
|
| >1nvm_A HOA, 4-hydroxy-2-oxovalerate aldolase; sequestered tunnel, substrate channeling; HET: NAD; 1.70A {Pseudomonas SP} SCOP: a.5.7.1 c.1.10.5 | Back alignment and structure |
|---|
Probab=93.08 E-value=2.3 Score=39.06 Aligned_cols=137 Identities=9% Similarity=0.113 Sum_probs=85.6
Q ss_pred HHHHHHHhh-cCCcEEEEeecCCCCHHHHHHHHhcCCcEEEEccCC----CcHHHHHHHHhCCCEEEEec-----CCHHH
Q 020013 53 DLIRKTRSL-TERPFGVGVVLAFPHNENIKAILSEKVAVLQVSWGE----YSEELVLEAHSAGVKVVPQV-----GSFDE 122 (332)
Q Consensus 53 ~~i~~~r~~-~~~p~gvnl~~~~~~~~~~~~~~~~~~~~I~~~~g~----~~~~~i~~~~~~g~~v~~~v-----~s~~~ 122 (332)
+.++++++. .+.++.+=........+.++.+.+.|++.|.+.... ...+.++.+++.|+.+...+ .+++.
T Consensus 71 e~l~~i~~~~~~~~i~~l~~p~~~~~~~i~~a~~aGvd~v~I~~~~s~~~~~~~~i~~ak~~G~~v~~~~~~a~~~~~e~ 150 (345)
T 1nvm_A 71 EYIEAVAGEISHAQIATLLLPGIGSVHDLKNAYQAGARVVRVATHCTEADVSKQHIEYARNLGMDTVGFLMMSHMIPAEK 150 (345)
T ss_dssp HHHHHHHTTCSSSEEEEEECBTTBCHHHHHHHHHHTCCEEEEEEETTCGGGGHHHHHHHHHHTCEEEEEEESTTSSCHHH
T ss_pred HHHHHHHhhCCCCEEEEEecCCcccHHHHHHHHhCCcCEEEEEEeccHHHHHHHHHHHHHHCCCEEEEEEEeCCCCCHHH
Confidence 345555543 233443211111223678889999999998775321 23467788888899887665 24443
Q ss_pred ----HHHHHHcCCCEEEEecCCCCcccCCCCchhhhHHHHHHHhCCCCCcEEeec----CcCCHHHHHHHHHcCcceeee
Q 020013 123 ----ARKAVNAGVDAIIVQGREAGGHVIGQDGLISLLPMVVDLIGDRDIPIIAAG----GIVDARGYVAALSLGAQGICL 194 (332)
Q Consensus 123 ----a~~a~~~g~D~ivv~G~eaGGh~~~~~~~~~ll~~i~~~~~~~~iPviaaG----GI~~~~~v~~al~~GA~gV~~ 194 (332)
++.+.+.|+|.|.+-+.- |.. .+.....++..+++.++. ++||-.-+ |.+ -.+..+++.+||+-|..
T Consensus 151 ~~~ia~~~~~~Ga~~i~l~DT~--G~~-~P~~v~~lv~~l~~~~~~-~~pi~~H~Hn~~G~a-vAn~laA~~aGa~~vd~ 225 (345)
T 1nvm_A 151 LAEQGKLMESYGATCIYMADSG--GAM-SMNDIRDRMRAFKAVLKP-ETQVGMHAHHNLSLG-VANSIVAVEEGCDRVDA 225 (345)
T ss_dssp HHHHHHHHHHHTCSEEEEECTT--CCC-CHHHHHHHHHHHHHHSCT-TSEEEEECBCTTSCH-HHHHHHHHHTTCCEEEE
T ss_pred HHHHHHHHHHCCCCEEEECCCc--Ccc-CHHHHHHHHHHHHHhcCC-CceEEEEECCCccHH-HHHHHHHHHcCCCEEEe
Confidence 445677899999886552 222 233446677787777631 57877633 774 47788889999987653
|
| >3cnb_A DNA-binding response regulator, MERR family; signal receiver domain, DNA binding protein, protein structu initiative, PSI-2; 2.00A {Colwellia psychrerythraea} | Back alignment and structure |
|---|
Probab=93.06 E-value=1.5 Score=33.49 Aligned_cols=86 Identities=12% Similarity=0.008 Sum_probs=60.5
Q ss_pred HHHHHh-CCCEEEEecCCHHHHHHHH-HcCCCEEEEecCCCCcccCCCCchhhhHHHHHHHhCCCCCcEEeecCcCCHHH
Q 020013 103 VLEAHS-AGVKVVPQVGSFDEARKAV-NAGVDAIIVQGREAGGHVIGQDGLISLLPMVVDLIGDRDIPIIAAGGIVDARG 180 (332)
Q Consensus 103 i~~~~~-~g~~v~~~v~s~~~a~~a~-~~g~D~ivv~G~eaGGh~~~~~~~~~ll~~i~~~~~~~~iPviaaGGI~~~~~ 180 (332)
.+.+.. .|..++..+.+.+++.... +..+|.|++.-.-. ....+.++..+++.....++|||+-.+-.+.+.
T Consensus 25 ~~~L~~~~~~~~v~~~~~~~~a~~~l~~~~~dlii~d~~l~------~~~g~~~~~~l~~~~~~~~~~ii~~s~~~~~~~ 98 (143)
T 3cnb_A 25 TQFLENLFPYAKIKIAYNPFDAGDLLHTVKPDVVMLDLMMV------GMDGFSICHRIKSTPATANIIVIAMTGALTDDN 98 (143)
T ss_dssp HHHHHHHCTTCEEEEECSHHHHHHHHHHTCCSEEEEETTCT------TSCHHHHHHHHHTSTTTTTSEEEEEESSCCHHH
T ss_pred HHHHHhccCccEEEEECCHHHHHHHHHhcCCCEEEEecccC------CCcHHHHHHHHHhCccccCCcEEEEeCCCCHHH
Confidence 344556 7888677788888877654 45699999854321 123467788877621112689998888888888
Q ss_pred HHHHHHcCcceeee
Q 020013 181 YVAALSLGAQGICL 194 (332)
Q Consensus 181 v~~al~~GA~gV~~ 194 (332)
..+++.+|++++..
T Consensus 99 ~~~~~~~g~~~~l~ 112 (143)
T 3cnb_A 99 VSRIVALGAETCFG 112 (143)
T ss_dssp HHHHHHTTCSEEEE
T ss_pred HHHHHhcCCcEEEe
Confidence 99999999998764
|
| >3cpr_A Dihydrodipicolinate synthetase; (beta/alpha)8-barrel fold with A C-terminal alpha-helical segment, amino-acid biosynthesis, cytoplasm; HET: MCL; 2.20A {Corynebacterium glutamicum} | Back alignment and structure |
|---|
Probab=93.05 E-value=0.41 Score=43.37 Aligned_cols=79 Identities=28% Similarity=0.395 Sum_probs=49.4
Q ss_pred HHHHHHHcCCCEEEEecCCCCcccCCCCchhhhHHHHHHHhCCCCCcEEeecCcCCHHHHH----HHHHcCcceeeeccc
Q 020013 122 EARKAVNAGVDAIIVQGREAGGHVIGQDGLISLLPMVVDLIGDRDIPIIAAGGIVDARGYV----AALSLGAQGICLGTR 197 (332)
Q Consensus 122 ~a~~a~~~g~D~ivv~G~eaGGh~~~~~~~~~ll~~i~~~~~~~~iPviaaGGI~~~~~v~----~al~~GA~gV~~GT~ 197 (332)
.++...+.|+|+|++-|..+-++......-..++..+++...+ ++|||+.=|=.+-++.. .+-.+|||++++-+.
T Consensus 42 lv~~li~~Gv~gl~v~GttGE~~~Ls~~Er~~v~~~~~~~~~g-rvpviaGvg~~st~~ai~la~~A~~~Gadavlv~~P 120 (304)
T 3cpr_A 42 VAAYLVDKGLDSLVLAGTTGESPTTTAAEKLELLKAVREEVGD-RAKLIAGVGTNNTRTSVELAEAAASAGADGLLVVTP 120 (304)
T ss_dssp HHHHHHHTTCCEEEESSTTTTTTTSCHHHHHHHHHHHHHHHTT-TSEEEEECCCSCHHHHHHHHHHHHHTTCSEEEEECC
T ss_pred HHHHHHHcCCCEEEECccccChhhCCHHHHHHHHHHHHHHhCC-CCcEEecCCCCCHHHHHHHHHHHHhcCCCEEEECCC
Confidence 3445667899999997764444331222235566666666643 68987544432444433 334589999999998
Q ss_pred cccC
Q 020013 198 FVAS 201 (332)
Q Consensus 198 fl~t 201 (332)
+...
T Consensus 121 ~y~~ 124 (304)
T 3cpr_A 121 YYSK 124 (304)
T ss_dssp CSSC
T ss_pred CCCC
Confidence 8754
|
| >3sgz_A Hydroxyacid oxidase 2; flavoprotein, homology, INH oxidoreductase-oxidoreductase inhibitor complex; HET: FMN HO6; 1.35A {Rattus norvegicus} PDB: 1tb3_A* | Back alignment and structure |
|---|
Probab=93.02 E-value=0.99 Score=41.73 Aligned_cols=81 Identities=21% Similarity=0.229 Sum_probs=59.2
Q ss_pred HHHHHHHhhcCCcEEEEeecCCCCHHHHHHHHhcCCcEEEEc--cC-----CC-cHHHHHHHHh---CCCEEEEe--cCC
Q 020013 53 DLIRKTRSLTERPFGVGVVLAFPHNENIKAILSEKVAVLQVS--WG-----EY-SEELVLEAHS---AGVKVVPQ--VGS 119 (332)
Q Consensus 53 ~~i~~~r~~~~~p~gvnl~~~~~~~~~~~~~~~~~~~~I~~~--~g-----~~-~~~~i~~~~~---~g~~v~~~--v~s 119 (332)
+.++.+++.++.|+.+..... .+..+.+.+.|+|+|.++ .| .+ ..+.+..+.+ ..++|+.. +.+
T Consensus 207 ~~i~~lr~~~~~PvivK~v~~---~e~A~~a~~~GaD~I~vsn~GG~~~d~~~~~~~~L~~i~~av~~~ipVia~GGI~~ 283 (352)
T 3sgz_A 207 NDLSLLQSITRLPIILKGILT---KEDAELAMKHNVQGIVVSNHGGRQLDEVSASIDALREVVAAVKGKIEVYMDGGVRT 283 (352)
T ss_dssp HHHHHHHHHCCSCEEEEEECS---HHHHHHHHHTTCSEEEECCGGGTSSCSSCCHHHHHHHHHHHHTTSSEEEEESSCCS
T ss_pred HHHHHHHHhcCCCEEEEecCc---HHHHHHHHHcCCCEEEEeCCCCCccCCCccHHHHHHHHHHHhCCCCeEEEECCCCC
Confidence 457888888889998876642 566788899999999883 22 12 2244444432 25888854 779
Q ss_pred HHHHHHHHHcCCCEEEE
Q 020013 120 FDEARKAVNAGVDAIIV 136 (332)
Q Consensus 120 ~~~a~~a~~~g~D~ivv 136 (332)
.+++.+++..|+|+|.+
T Consensus 284 g~Dv~kaLalGA~aV~i 300 (352)
T 3sgz_A 284 GTDVLKALALGARCIFL 300 (352)
T ss_dssp HHHHHHHHHTTCSEEEE
T ss_pred HHHHHHHHHcCCCEEEE
Confidence 99999999999999988
|
| >3daq_A DHDPS, dihydrodipicolinate synthase; lysine biosynthesis, amino-ACI biosynthesis, diaminopimelate biosynthesis, lyase, schiff B; 1.45A {Staphylococcus aureus} SCOP: c.1.10.0 PDB: 3di1_A 3di0_A | Back alignment and structure |
|---|
Probab=92.99 E-value=0.31 Score=43.86 Aligned_cols=122 Identities=20% Similarity=0.297 Sum_probs=66.0
Q ss_pred HHHHHHHcCCCEEEEecCCCCcccCCCCchhhhHHHHHHHhCCCCCcEEeecCcCCHHHHH----HHHHcCcceeeeccc
Q 020013 122 EARKAVNAGVDAIIVQGREAGGHVIGQDGLISLLPMVVDLIGDRDIPIIAAGGIVDARGYV----AALSLGAQGICLGTR 197 (332)
Q Consensus 122 ~a~~a~~~g~D~ivv~G~eaGGh~~~~~~~~~ll~~i~~~~~~~~iPviaaGGI~~~~~v~----~al~~GA~gV~~GT~ 197 (332)
.++...+.|+|+|++-|..+-++......-..++..+++...+ ++|||+.=|=.+-++.. .+-.+|||++++-+.
T Consensus 28 lv~~li~~Gv~gl~v~GttGE~~~Lt~~Er~~v~~~~~~~~~g-rvpviaGvg~~~t~~ai~la~~a~~~Gadavlv~~P 106 (292)
T 3daq_A 28 HVNFLLENNAQAIIVNGTTAESPTLTTDEKELILKTVIDLVDK-RVPVIAGTGTNDTEKSIQASIQAKALGADAIMLITP 106 (292)
T ss_dssp HHHHHHHTTCCEEEESSGGGTGGGSCHHHHHHHHHHHHHHHTT-SSCEEEECCCSCHHHHHHHHHHHHHHTCSEEEEECC
T ss_pred HHHHHHHcCCCEEEECccccccccCCHHHHHHHHHHHHHHhCC-CCcEEEeCCcccHHHHHHHHHHHHHcCCCEEEECCC
Confidence 3445678899999996654333321111224566666666643 69998765533445543 344589999999998
Q ss_pred cccCc-cCCCCHHHHHHHhcCCCceEEEEecccCCCCCCceeecChHHHhhhc
Q 020013 198 FVASE-ESYAHPEYKRKLVEMDKTEYTDVFGRARWPGAPHRVLQTPFFSNWKN 249 (332)
Q Consensus 198 fl~t~-Es~~~~~~k~~~~~~~~t~~t~~~~~~~~~g~~~R~l~n~~~~~~~~ 249 (332)
+.... +...-+.| +.|.++.+.- ..+++ .|++.+.-+....+.++.+
T Consensus 107 ~y~~~~~~~l~~~f-~~ia~a~~lP-iilYn---~P~~tg~~l~~~~~~~La~ 154 (292)
T 3daq_A 107 YYNKTNQRGLVKHF-EAIADAVKLP-VVLYN---VPSRTNMTIEPETVEILSQ 154 (292)
T ss_dssp CSSCCCHHHHHHHH-HHHHHHHCSC-EEEEE---CHHHHSCCCCHHHHHHHHT
T ss_pred CCCCCCHHHHHHHH-HHHHHhCCCC-EEEEe---cccccCCCCCHHHHHHHhc
Confidence 76542 11111222 2333333332 22443 2344444555555555443
|
| >2nzl_A Hydroxyacid oxidase 1; HAOX1, glycolate oxidase, GOX, GOX1, structural genomics, structural genom consortium, SGC, oxidoreductase; HET: FMN; 1.35A {Homo sapiens} PDB: 2rdu_A* 2rdt_A* 2rdw_A* 2w0u_A* | Back alignment and structure |
|---|
Probab=92.89 E-value=0.78 Score=43.09 Aligned_cols=81 Identities=22% Similarity=0.230 Sum_probs=57.2
Q ss_pred HHHHHHHhhcCCcEEEEeecCCCCHHHHHHHHhcCCcEEEEc--cC------CCcHHHHHHHHhC---CCEEEE--ecCC
Q 020013 53 DLIRKTRSLTERPFGVGVVLAFPHNENIKAILSEKVAVLQVS--WG------EYSEELVLEAHSA---GVKVVP--QVGS 119 (332)
Q Consensus 53 ~~i~~~r~~~~~p~gvnl~~~~~~~~~~~~~~~~~~~~I~~~--~g------~~~~~~i~~~~~~---g~~v~~--~v~s 119 (332)
+.++.+++.++.|+.+..+. ..+..+.+.+.|+|+|.++ .| .+..+.+..+++. .++|+. .+.+
T Consensus 242 ~~i~~lr~~~~~PvivKgv~---~~e~A~~a~~aGad~I~vs~~ggr~~~~g~~~~~~l~~v~~av~~~ipVia~GGI~~ 318 (392)
T 2nzl_A 242 EDIKWLRRLTSLPIVAKGIL---RGDDAREAVKHGLNGILVSNHGARQLDGVPATIDVLPEIVEAVEGKVEVFLDGGVRK 318 (392)
T ss_dssp HHHHHHC--CCSCEEEEEEC---CHHHHHHHHHTTCCEEEECCGGGTSSTTCCCHHHHHHHHHHHHTTSSEEEECSSCCS
T ss_pred HHHHHHHHhhCCCEEEEecC---CHHHHHHHHHcCCCEEEeCCCCCCcCCCCcChHHHHHHHHHHcCCCCEEEEECCCCC
Confidence 44777887788899886543 2566788899999999984 22 1222444444432 588885 4779
Q ss_pred HHHHHHHHHcCCCEEEE
Q 020013 120 FDEARKAVNAGVDAIIV 136 (332)
Q Consensus 120 ~~~a~~a~~~g~D~ivv 136 (332)
.+++.+++..|||+|.+
T Consensus 319 g~Dv~kalalGAd~V~i 335 (392)
T 2nzl_A 319 GTDVLKALALGAKAVFV 335 (392)
T ss_dssp HHHHHHHHHTTCSEEEE
T ss_pred HHHHHHHHHhCCCeeEE
Confidence 99999999999999988
|
| >3fkr_A L-2-keto-3-deoxyarabonate dehydratase; DHDPS/NAL family, complex, pyruvate, lyase; HET: KPI; 1.80A {Azospirillum brasilense} PDB: 3fkk_A | Back alignment and structure |
|---|
Probab=92.85 E-value=0.19 Score=45.77 Aligned_cols=119 Identities=16% Similarity=0.207 Sum_probs=65.9
Q ss_pred HHHHHHcCCCEEEEecCCCCcccCCCCchhhhHHHHHHHhCCCCCcEEee-cCcCCHHHHH---HHHHcCcceeeecccc
Q 020013 123 ARKAVNAGVDAIIVQGREAGGHVIGQDGLISLLPMVVDLIGDRDIPIIAA-GGIVDARGYV---AALSLGAQGICLGTRF 198 (332)
Q Consensus 123 a~~a~~~g~D~ivv~G~eaGGh~~~~~~~~~ll~~i~~~~~~~~iPviaa-GGI~~~~~v~---~al~~GA~gV~~GT~f 198 (332)
++...+.|+|+|++-|..+-+.......-..++..+++...+ ++|||+. |+.++.+.+. .+-++|||++.+-+.+
T Consensus 35 v~~li~~Gv~gl~v~GtTGE~~~Ls~~Er~~v~~~~~~~~~g-rvpviaGvg~~~t~~ai~la~~A~~~Gadavlv~~Py 113 (309)
T 3fkr_A 35 VDFMIDAGSDGLCILANFSEQFAITDDERDVLTRTILEHVAG-RVPVIVTTSHYSTQVCAARSLRAQQLGAAMVMAMPPY 113 (309)
T ss_dssp HHHHHHTTCSCEEESSGGGTGGGSCHHHHHHHHHHHHHHHTT-SSCEEEECCCSSHHHHHHHHHHHHHTTCSEEEECCSC
T ss_pred HHHHHHcCCCEEEECccccCcccCCHHHHHHHHHHHHHHhCC-CCcEEEecCCchHHHHHHHHHHHHHcCCCEEEEcCCC
Confidence 445678899999997664333321112234566666666643 6999975 5565444432 3445899999999987
Q ss_pred cc----CccCCCCHHHHHHHhcCCCceEEEEecccCCCCCCceeecChHHHhhh
Q 020013 199 VA----SEESYAHPEYKRKLVEMDKTEYTDVFGRARWPGAPHRVLQTPFFSNWK 248 (332)
Q Consensus 199 l~----t~Es~~~~~~k~~~~~~~~t~~t~~~~~~~~~g~~~R~l~n~~~~~~~ 248 (332)
.. ..+...-+-|+ .|.++.+.- ..+++. |+ .+.-+....+.++.
T Consensus 114 y~~~~~~s~~~l~~~f~-~va~a~~lP-iilYn~---P~-tg~~l~~~~~~~La 161 (309)
T 3fkr_A 114 HGATFRVPEAQIFEFYA-RVSDAIAIP-IMVQDA---PA-SGTALSAPFLARMA 161 (309)
T ss_dssp BTTTBCCCHHHHHHHHH-HHHHHCSSC-EEEEEC---GG-GCCCCCHHHHHHHH
T ss_pred CccCCCCCHHHHHHHHH-HHHHhcCCC-EEEEeC---CC-CCCCCCHHHHHHHH
Confidence 62 22222333333 344444433 234542 33 33445555555543
|
| >2ehh_A DHDPS, dihydrodipicolinate synthase; structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.90A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=92.85 E-value=0.4 Score=43.20 Aligned_cols=79 Identities=22% Similarity=0.250 Sum_probs=49.6
Q ss_pred HHHHHHHcCCCEEEEecCCCCcccCCCCchhhhHHHHHHHhCCCCCcEEeecCcCCHHHHH----HHHHcCcceeeeccc
Q 020013 122 EARKAVNAGVDAIIVQGREAGGHVIGQDGLISLLPMVVDLIGDRDIPIIAAGGIVDARGYV----AALSLGAQGICLGTR 197 (332)
Q Consensus 122 ~a~~a~~~g~D~ivv~G~eaGGh~~~~~~~~~ll~~i~~~~~~~~iPviaaGGI~~~~~v~----~al~~GA~gV~~GT~ 197 (332)
.++...+.|+|+|++-|..+-++......-..++..+++...+ ++|||+.=|=.+-+++. .+-++|||++++-+.
T Consensus 26 lv~~li~~Gv~gl~~~GttGE~~~Ls~~Er~~v~~~~~~~~~g-rvpviaGvg~~~t~~ai~la~~A~~~Gadavlv~~P 104 (294)
T 2ehh_A 26 LIEFHVDNGTDAILVCGTTGESPTLTFEEHEKVIEFAVKRAAG-RIKVIAGTGGNATHEAVHLTAHAKEVGADGALVVVP 104 (294)
T ss_dssp HHHHHHTTTCCEEEESSTTTTGGGSCHHHHHHHHHHHHHHHTT-SSEEEEECCCSCHHHHHHHHHHHHHTTCSEEEEECC
T ss_pred HHHHHHHCCCCEEEECccccChhhCCHHHHHHHHHHHHHHhCC-CCcEEEecCCCCHHHHHHHHHHHHhcCCCEEEECCC
Confidence 3445678899999997764444332222235566666766643 68987544432434433 344589999999999
Q ss_pred cccC
Q 020013 198 FVAS 201 (332)
Q Consensus 198 fl~t 201 (332)
+...
T Consensus 105 ~y~~ 108 (294)
T 2ehh_A 105 YYNK 108 (294)
T ss_dssp CSSC
T ss_pred CCCC
Confidence 8754
|
| >2rfg_A Dihydrodipicolinate synthase; beta barrel, amino-acid biosynthesis, diaminopimelate biosyn lyase, lysine biosynthesis, schiff base; 1.50A {Hahella chejuensis} | Back alignment and structure |
|---|
Probab=92.82 E-value=0.16 Score=45.91 Aligned_cols=79 Identities=13% Similarity=0.221 Sum_probs=48.9
Q ss_pred HHHHHHHcCCCEEEEecCCCCcccCCCCchhhhHHHHHHHhCCCCCcEEee-cCcCCHHHH---HHHHHcCcceeeeccc
Q 020013 122 EARKAVNAGVDAIIVQGREAGGHVIGQDGLISLLPMVVDLIGDRDIPIIAA-GGIVDARGY---VAALSLGAQGICLGTR 197 (332)
Q Consensus 122 ~a~~a~~~g~D~ivv~G~eaGGh~~~~~~~~~ll~~i~~~~~~~~iPviaa-GGI~~~~~v---~~al~~GA~gV~~GT~ 197 (332)
.+....+.|+|+|++-|..+-+.......-..++..+++...+ ++|||+. |+.++.+.+ ..+-++|||++++-+.
T Consensus 26 lv~~li~~Gv~gi~v~GttGE~~~Ls~~Er~~v~~~~~~~~~g-rvpviaGvg~~~t~~ai~la~~A~~~Gadavlv~~P 104 (297)
T 2rfg_A 26 LVDWQIKHGAHGLVPVGTTGESPTLTEEEHKRVVALVAEQAQG-RVPVIAGAGSNNPVEAVRYAQHAQQAGADAVLCVAG 104 (297)
T ss_dssp HHHHHHHTTCSEEECSSGGGTGGGSCHHHHHHHHHHHHHHHTT-SSCBEEECCCSSHHHHHHHHHHHHHHTCSEEEECCC
T ss_pred HHHHHHHcCCCEEEECccccchhhCCHHHHHHHHHHHHHHhCC-CCeEEEccCCCCHHHHHHHHHHHHhcCCCEEEEcCC
Confidence 3445678899999997664333321212234566666666643 6898754 444443333 2334589999999999
Q ss_pred cccC
Q 020013 198 FVAS 201 (332)
Q Consensus 198 fl~t 201 (332)
+...
T Consensus 105 ~y~~ 108 (297)
T 2rfg_A 105 YYNR 108 (297)
T ss_dssp TTTC
T ss_pred CCCC
Confidence 8754
|
| >1s2w_A Phosphoenolpyruvate phosphomutase; phosphonopyruvate, phosphonate biosynthesis pathway, isomera; 1.69A {Mytilus edulis} SCOP: c.1.12.7 PDB: 1m1b_A 1s2t_A 1s2v_A 1pym_A 1s2u_A | Back alignment and structure |
|---|
Probab=92.80 E-value=4.5 Score=36.32 Aligned_cols=185 Identities=14% Similarity=0.091 Sum_probs=104.4
Q ss_pred chhhcCCccceecCCCCCCCCcHHHHHHHHhCCCceeecC-------CC-----CCCHHHHHHHHHHHHhhcCCcEEEEe
Q 020013 3 WRGMLGFEYGIVQAPLGPDISGPELVAAVANAGGLGLLRA-------PD-----WEAPDYLRDLIRKTRSLTERPFGVGV 70 (332)
Q Consensus 3 ~~~~l~~~~Pii~apM~~g~s~~~la~avs~aGglG~i~~-------~~-----~~~~e~~~~~i~~~r~~~~~p~gvnl 70 (332)
|.+++.-.-|++ |. +.-++-.+..+.++|.=.+... -+ ..+.+++...++.+...++.|+-+.+
T Consensus 11 lr~l~~~~~~i~---~~-~a~D~~sA~~~~~aG~~ai~vsg~~~a~~lG~pD~~~vt~~em~~~~~~I~~~~~~PviaD~ 86 (295)
T 1s2w_A 11 LKQMLNSKDLEF---IM-EAHNGLSARIVQEAGFKGIWGSGLSVSAQLGVRDSNEASWTQVVEVLEFMSDASDVPILLDA 86 (295)
T ss_dssp HHHHHHSSSCEE---EE-EECSHHHHHHHHHHTCSCEEECCHHHHHTC---------CHHHHHHHHHHHHTCSSCEEEEC
T ss_pred HHHHHhCCCcEE---Ee-cCCCHHHHHHHHHcCCCEEEeChHHHHHhCCCCCCCCCCHHHHHHHHHHHHhcCCCCEEecC
Confidence 334444344555 32 4678888888877762111111 01 12445566666666666778866654
Q ss_pred ecCCCC----HHHHHHHHhcCCcEEEEccCC----------------CcHHHHHHHHh-------CCCEEEEecCC----
Q 020013 71 VLAFPH----NENIKAILSEKVAVLQVSWGE----------------YSEELVLEAHS-------AGVKVVPQVGS---- 119 (332)
Q Consensus 71 ~~~~~~----~~~~~~~~~~~~~~I~~~~g~----------------~~~~~i~~~~~-------~g~~v~~~v~s---- 119 (332)
-.-... .+.+..+.+.|+..|.+--+. +..+.+++++. .+..|..-..+
T Consensus 87 d~Gyg~~~~v~~~v~~l~~aGaagv~iED~~~~k~cgH~gg~~k~l~p~~e~~~rI~Aa~~a~~~~~~~i~aRtda~~a~ 166 (295)
T 1s2w_A 87 DTGYGNFNNARRLVRKLEDRGVAGACLEDKLFPKTNSLHDGRAQPLADIEEFALKIKACKDSQTDPDFCIVARVEAFIAG 166 (295)
T ss_dssp CSSCSSHHHHHHHHHHHHHTTCCEEEEECBCC--------CTTCCBCCHHHHHHHHHHHHHHCSSTTCEEEEEECTTTTT
T ss_pred CCCCCCHHHHHHHHHHHHHcCCcEEEECCCCCCccccccCCCCCcccCHHHHHHHHHHHHHhcccCCcEEEEeehHHhcc
Confidence 322111 234556678999999873221 12244554432 35667654432
Q ss_pred --HH----HHHHHHHcCCCEEEEecCCCCcccCCCCchhhhHHHHHHHhCCCCCcEEeecCcCCHHHHHHHHHcCcceee
Q 020013 120 --FD----EARKAVNAGVDAIIVQGREAGGHVIGQDGLISLLPMVVDLIGDRDIPIIAAGGIVDARGYVAALSLGAQGIC 193 (332)
Q Consensus 120 --~~----~a~~a~~~g~D~ivv~G~eaGGh~~~~~~~~~ll~~i~~~~~~~~iPviaaGGI~~~~~v~~al~~GA~gV~ 193 (332)
.+ .++...++|+|.|++++ + .++...+.++.+.+.. .+|+++.-+-...-++.+.-++|..-|.
T Consensus 167 ~g~~~ai~Ra~ay~eAGAd~i~~e~----~-----~~~~~~~~~i~~~~~~-~~P~i~~~~~~~~~~~~eL~~lGv~~v~ 236 (295)
T 1s2w_A 167 WGLDEALKRAEAYRNAGADAILMHS----K-----KADPSDIEAFMKAWNN-QGPVVIVPTKYYKTPTDHFRDMGVSMVI 236 (295)
T ss_dssp CCHHHHHHHHHHHHHTTCSEEEECC----C-----SSSSHHHHHHHHHHTT-CSCEEECCSTTTTSCHHHHHHHTCCEEE
T ss_pred ccHHHHHHHHHHHHHcCCCEEEEcC----C-----CCCHHHHHHHHHHcCC-CCCEEEeCCCCCCCCHHHHHHcCCcEEE
Confidence 23 34567789999999952 1 1224567788887731 3899876331111236677789999999
Q ss_pred eccccccC
Q 020013 194 LGTRFVAS 201 (332)
Q Consensus 194 ~GT~fl~t 201 (332)
.|...+.+
T Consensus 237 ~~~~~~ra 244 (295)
T 1s2w_A 237 WANHNLRA 244 (295)
T ss_dssp ECSHHHHH
T ss_pred EChHHHHH
Confidence 98776543
|
| >3b4u_A Dihydrodipicolinate synthase; structural genomics, PSI-2, MC protein structure initiative, midwest center for structural genomics; 1.20A {Agrobacterium tumefaciens str} | Back alignment and structure |
|---|
Probab=92.80 E-value=0.21 Score=45.06 Aligned_cols=79 Identities=19% Similarity=0.193 Sum_probs=49.3
Q ss_pred HHHHHHHcCCCEEEEecCCCCcccCCCCchhhhHHHHHHHhCCCCCcEEee-cCcCCHHHH---HHHHHcCcceeeeccc
Q 020013 122 EARKAVNAGVDAIIVQGREAGGHVIGQDGLISLLPMVVDLIGDRDIPIIAA-GGIVDARGY---VAALSLGAQGICLGTR 197 (332)
Q Consensus 122 ~a~~a~~~g~D~ivv~G~eaGGh~~~~~~~~~ll~~i~~~~~~~~iPviaa-GGI~~~~~v---~~al~~GA~gV~~GT~ 197 (332)
.+....+.|+|+|++-|..+-++......-..++..+++...+ ++|||+. |+.++.+.+ ..+-.+|||++++-+.
T Consensus 29 lv~~li~~Gv~gl~~~GttGE~~~Ls~~Er~~v~~~~~~~~~g-r~pviaGvg~~~t~~ai~la~~A~~~Gadavlv~~P 107 (294)
T 3b4u_A 29 HARRCLSNGCDSVTLFGTTGEGCSVGSRERQAILSSFIAAGIA-PSRIVTGVLVDSIEDAADQSAEALNAGARNILLAPP 107 (294)
T ss_dssp HHHHHHHTTCSEEEESSTTTTGGGSCHHHHHHHHHHHHHTTCC-GGGEEEEECCSSHHHHHHHHHHHHHTTCSEEEECCC
T ss_pred HHHHHHHcCCCEEEECccccChhhCCHHHHHHHHHHHHHHhCC-CCcEEEeCCCccHHHHHHHHHHHHhcCCCEEEEcCC
Confidence 3455678899999997764444331222234556666666543 6898754 444333333 2334589999999999
Q ss_pred cccC
Q 020013 198 FVAS 201 (332)
Q Consensus 198 fl~t 201 (332)
+...
T Consensus 108 ~y~~ 111 (294)
T 3b4u_A 108 SYFK 111 (294)
T ss_dssp CSSC
T ss_pred cCCC
Confidence 8765
|
| >3lua_A Response regulator receiver protein; two-component signal transduction system, histidine kinase, phosphorelay, receiver domain, nysgxrc; 2.40A {Clostridium thermocellum} | Back alignment and structure |
|---|
Probab=92.76 E-value=0.71 Score=35.44 Aligned_cols=84 Identities=13% Similarity=0.116 Sum_probs=60.8
Q ss_pred HHHHHh-CCCEEEEecCCHHHHHHHHH--cCCCEEEEecCCCCcccCCCCchhhhHHHHHH--HhCCCCCcEEeecCcCC
Q 020013 103 VLEAHS-AGVKVVPQVGSFDEARKAVN--AGVDAIIVQGREAGGHVIGQDGLISLLPMVVD--LIGDRDIPIIAAGGIVD 177 (332)
Q Consensus 103 i~~~~~-~g~~v~~~v~s~~~a~~a~~--~g~D~ivv~G~eaGGh~~~~~~~~~ll~~i~~--~~~~~~iPviaaGGI~~ 177 (332)
.+.+++ .|..+. .+.+.+++..... ..+|.|++.-.-.| ....+.++..+++ ... ++|||+-.+-.+
T Consensus 21 ~~~L~~~~~~~v~-~~~~~~~a~~~l~~~~~~dlvi~D~~l~~-----~~~g~~~~~~l~~~~~~~--~~~ii~ls~~~~ 92 (140)
T 3lua_A 21 KIIFDNIGEYDFI-EVENLKKFYSIFKDLDSITLIIMDIAFPV-----EKEGLEVLSAIRNNSRTA--NTPVIIATKSDN 92 (140)
T ss_dssp HHHHHHHCCCEEE-EECSHHHHHTTTTTCCCCSEEEECSCSSS-----HHHHHHHHHHHHHSGGGT--TCCEEEEESCCC
T ss_pred HHHHHhccCccEE-EECCHHHHHHHHhcCCCCcEEEEeCCCCC-----CCcHHHHHHHHHhCcccC--CCCEEEEeCCCC
Confidence 344556 788777 7888888876654 46999998532110 1234677888877 433 799999999889
Q ss_pred HHHHHHHHHcCcceeee
Q 020013 178 ARGYVAALSLGAQGICL 194 (332)
Q Consensus 178 ~~~v~~al~~GA~gV~~ 194 (332)
.+.+.+++.+|++++..
T Consensus 93 ~~~~~~~~~~g~~~~l~ 109 (140)
T 3lua_A 93 PGYRHAALKFKVSDYIL 109 (140)
T ss_dssp HHHHHHHHHSCCSEEEE
T ss_pred HHHHHHHHHcCCCEEEE
Confidence 99999999999998764
|
| >3tak_A DHDPS, dihydrodipicolinate synthase; TIM barrel, lysine biosynthesis, pyruvate, lyase; 1.42A {Acinetobacter baumannii} PDB: 3pud_A* 3pue_A* 3pul_A 3rk8_A 3tce_A* 3tdf_A 3u8g_A 3uqn_A 4dxv_A | Back alignment and structure |
|---|
Probab=92.74 E-value=0.38 Score=43.29 Aligned_cols=78 Identities=22% Similarity=0.367 Sum_probs=49.8
Q ss_pred HHHHHHcCCCEEEEecCCCCcccCCCCchhhhHHHHHHHhCCCCCcEEeecCcCCHHHHH----HHHHcCcceeeecccc
Q 020013 123 ARKAVNAGVDAIIVQGREAGGHVIGQDGLISLLPMVVDLIGDRDIPIIAAGGIVDARGYV----AALSLGAQGICLGTRF 198 (332)
Q Consensus 123 a~~a~~~g~D~ivv~G~eaGGh~~~~~~~~~ll~~i~~~~~~~~iPviaaGGI~~~~~v~----~al~~GA~gV~~GT~f 198 (332)
++...+.|+|+|++-|..+-++......-..++..+++...+ ++|||+.=|=.+-++.. .+-.+|||++++-+.+
T Consensus 28 v~~li~~Gv~gl~~~GttGE~~~Ls~~Er~~v~~~~~~~~~g-r~pviaGvg~~~t~~ai~la~~a~~~Gadavlv~~P~ 106 (291)
T 3tak_A 28 VEWHIEQGTNSIVAVGTTGEASTLSMEEHTQVIKEIIRVANK-RIPIIAGTGANSTREAIELTKAAKDLGADAALLVTPY 106 (291)
T ss_dssp HHHHHHHTCCEEEESSTTTTGGGSCHHHHHHHHHHHHHHHTT-SSCEEEECCCSSHHHHHHHHHHHHHHTCSEEEEECCC
T ss_pred HHHHHHCCCCEEEECccccccccCCHHHHHHHHHHHHHHhCC-CCeEEEeCCCCCHHHHHHHHHHHHhcCCCEEEEcCCC
Confidence 445668899999997764444332222235566666666643 68988754433444433 3445899999999988
Q ss_pred ccC
Q 020013 199 VAS 201 (332)
Q Consensus 199 l~t 201 (332)
...
T Consensus 107 y~~ 109 (291)
T 3tak_A 107 YNK 109 (291)
T ss_dssp SSC
T ss_pred CCC
Confidence 764
|
| >3h1g_A Chemotaxis protein CHEY homolog; sulfate-bound CHEY, cytoplasm, flagellar rotatio magnesium, metal-binding, phosphoprotein; 1.70A {Helicobacter pylori} SCOP: c.23.1.1 PDB: 3gwg_A 3h1e_A 3h1f_A | Back alignment and structure |
|---|
Probab=92.72 E-value=1.2 Score=33.61 Aligned_cols=85 Identities=16% Similarity=0.100 Sum_probs=57.3
Q ss_pred HHHHhCCCEEEEecCCHHHHHHHHH-c-CCCEEEEecCCCCcccCCCCchhhhHHHHHHHhCCCCCcEEeecCcCCHHHH
Q 020013 104 LEAHSAGVKVVPQVGSFDEARKAVN-A-GVDAIIVQGREAGGHVIGQDGLISLLPMVVDLIGDRDIPIIAAGGIVDARGY 181 (332)
Q Consensus 104 ~~~~~~g~~v~~~v~s~~~a~~a~~-~-g~D~ivv~G~eaGGh~~~~~~~~~ll~~i~~~~~~~~iPviaaGGI~~~~~v 181 (332)
+.+++.|...+..+.+..++..... . .+|.|++.-.- .....+.++.++++.....++|||+-.+-.+...+
T Consensus 23 ~~L~~~g~~~v~~~~~~~~a~~~~~~~~~~dlvi~D~~~------p~~~g~~~~~~lr~~~~~~~~pii~~s~~~~~~~~ 96 (129)
T 3h1g_A 23 NTLSRLGYEDVLEAEHGVEAWEKLDANADTKVLITDWNM------PEMNGLDLVKKVRSDSRFKEIPIIMITAEGGKAEV 96 (129)
T ss_dssp HHHHHTTCCCEEEESSHHHHHHHHHHCTTCCEEEECSCC------SSSCHHHHHHHHHTSTTCTTCCEEEEESCCSHHHH
T ss_pred HHHHHcCCcEEEEeCCHHHHHHHHHhCCCCCEEEEeCCC------CCCCHHHHHHHHHhcCCCCCCeEEEEeCCCChHHH
Confidence 4455667764556777777765543 3 58988884221 11234677777776322126899998888888899
Q ss_pred HHHHHcCcceeee
Q 020013 182 VAALSLGAQGICL 194 (332)
Q Consensus 182 ~~al~~GA~gV~~ 194 (332)
..++.+||+++..
T Consensus 97 ~~~~~~g~~~~l~ 109 (129)
T 3h1g_A 97 ITALKAGVNNYIV 109 (129)
T ss_dssp HHHHHHTCCEEEE
T ss_pred HHHHHcCccEEEe
Confidence 9999999998764
|
| >2yxg_A DHDPS, dihydrodipicolinate synthase; MJ0244, TIM beta/alpha-barrel fold, structural genomics, NPPSFA; 2.20A {Methanocaldococcus jannaschii DSM2661} | Back alignment and structure |
|---|
Probab=92.70 E-value=0.42 Score=42.94 Aligned_cols=79 Identities=19% Similarity=0.315 Sum_probs=49.5
Q ss_pred HHHHHHHcCCCEEEEecCCCCcccCCCCchhhhHHHHHHHhCCCCCcEEee-cCcCCHHHH---HHHHHcCcceeeeccc
Q 020013 122 EARKAVNAGVDAIIVQGREAGGHVIGQDGLISLLPMVVDLIGDRDIPIIAA-GGIVDARGY---VAALSLGAQGICLGTR 197 (332)
Q Consensus 122 ~a~~a~~~g~D~ivv~G~eaGGh~~~~~~~~~ll~~i~~~~~~~~iPviaa-GGI~~~~~v---~~al~~GA~gV~~GT~ 197 (332)
.+....+.|+|+|++-|..+-++......-..++..+++...+ ++|||+. |+.++.+.+ ..+-++|||++++-+.
T Consensus 26 lv~~li~~Gv~gl~~~GttGE~~~Ls~~Er~~v~~~~~~~~~g-r~pviaGvg~~~t~~ai~la~~a~~~Gadavlv~~P 104 (289)
T 2yxg_A 26 NINFLIENGVSGIVAVGTTGESPTLSHEEHKKVIEKVVDVVNG-RVQVIAGAGSNCTEEAIELSVFAEDVGADAVLSITP 104 (289)
T ss_dssp HHHHHHHTTCSEEEESSTTTTGGGSCHHHHHHHHHHHHHHHTT-SSEEEEECCCSSHHHHHHHHHHHHHHTCSEEEEECC
T ss_pred HHHHHHHCCCCEEEECccccChhhCCHHHHHHHHHHHHHHhCC-CCcEEEeCCCCCHHHHHHHHHHHHhcCCCEEEECCC
Confidence 3445678899999997664444331222235566666666643 6898754 444443333 2334589999999999
Q ss_pred cccC
Q 020013 198 FVAS 201 (332)
Q Consensus 198 fl~t 201 (332)
+...
T Consensus 105 ~y~~ 108 (289)
T 2yxg_A 105 YYNK 108 (289)
T ss_dssp CSSC
T ss_pred CCCC
Confidence 8754
|
| >2nli_A Lactate oxidase; flavoenzyme, FMN, D-lactate, oxidoreducta; HET: FMN; 1.59A {Aerococcus viridans} PDB: 2zfa_A* 2du2_A* 2e77_A* 2j6x_A* | Back alignment and structure |
|---|
Probab=92.69 E-value=0.92 Score=42.22 Aligned_cols=81 Identities=19% Similarity=0.130 Sum_probs=59.1
Q ss_pred HHHHHHHhhcCCcEEEEeecCCCCHHHHHHHHhcCCcEEEEc--cC------CCcHHHHHHHHhC---CCEEEE--ecCC
Q 020013 53 DLIRKTRSLTERPFGVGVVLAFPHNENIKAILSEKVAVLQVS--WG------EYSEELVLEAHSA---GVKVVP--QVGS 119 (332)
Q Consensus 53 ~~i~~~r~~~~~p~gvnl~~~~~~~~~~~~~~~~~~~~I~~~--~g------~~~~~~i~~~~~~---g~~v~~--~v~s 119 (332)
+.++.+++.++.|+.+..+. ..+..+.+.+.|+|+|.++ .| .+..+.+..+++. .++|+. .+.+
T Consensus 219 ~~i~~lr~~~~~PvivK~v~---~~e~a~~a~~~Gad~I~vs~~ggr~~~~g~~~~~~l~~v~~~v~~~ipVia~GGI~~ 295 (368)
T 2nli_A 219 RDIEEIAGHSGLPVFVKGIQ---HPEDADMAIKRGASGIWVSNHGARQLYEAPGSFDTLPAIAERVNKRVPIVFDSGVRR 295 (368)
T ss_dssp HHHHHHHHHSSSCEEEEEEC---SHHHHHHHHHTTCSEEEECCGGGTSCSSCCCHHHHHHHHHHHHTTSSCEEECSSCCS
T ss_pred HHHHHHHHHcCCCEEEEcCC---CHHHHHHHHHcCCCEEEEcCCCcCCCCCCCChHHHHHHHHHHhCCCCeEEEECCCCC
Confidence 44788888788899886442 2566788899999999984 22 1223445555432 578885 4779
Q ss_pred HHHHHHHHHcCCCEEEE
Q 020013 120 FDEARKAVNAGVDAIIV 136 (332)
Q Consensus 120 ~~~a~~a~~~g~D~ivv 136 (332)
.+++.+++..|+|+|.+
T Consensus 296 g~D~~kalalGAd~V~i 312 (368)
T 2nli_A 296 GEHVAKALASGADVVAL 312 (368)
T ss_dssp HHHHHHHHHTTCSEEEE
T ss_pred HHHHHHHHHcCCCEEEE
Confidence 99999999999999988
|
| >3o07_A Pyridoxine biosynthesis protein SNZ1; (beta/alpha)8-barrel, pyridoxal 5-phosphate synthase, PLP G3 SNO1, biosynthetic protein; HET: 1GP; 1.80A {Saccharomyces cerevisiae} PDB: 3o06_A 3o05_A* 3fem_A | Back alignment and structure |
|---|
Probab=92.68 E-value=0.42 Score=42.52 Aligned_cols=76 Identities=18% Similarity=0.192 Sum_probs=61.5
Q ss_pred EEEEecCCHHHHHHHHHcCCCEEEEe-c-----CCCCcccCCCCchhhhHHHHHHHhCCCCCcEEeecCcCCHHHHHHHH
Q 020013 112 KVVPQVGSFDEARKAVNAGVDAIIVQ-G-----REAGGHVIGQDGLISLLPMVVDLIGDRDIPIIAAGGIVDARGYVAAL 185 (332)
Q Consensus 112 ~v~~~v~s~~~a~~a~~~g~D~ivv~-G-----~eaGGh~~~~~~~~~ll~~i~~~~~~~~iPviaaGGI~~~~~v~~al 185 (332)
-|+..|.++++|+.++++|+.+|.+- + ...||.. ..+....+.++++.+ ++||++===|+.-..+...-
T Consensus 13 ~vimdv~~~eqa~iae~aGa~av~~l~~~p~d~r~~gGv~--Rm~dp~~I~~I~~aV---sIPVm~k~righ~~EAqile 87 (291)
T 3o07_A 13 GVIMDVVTPEQAKIAEKSGACAVMALESIPADMRKSGKVC--RMSDPKMIKDIMNSV---SIPVMAKVRIGHFVEAQIIE 87 (291)
T ss_dssp CEEEEESSHHHHHHHHHHTCSEEEECSSCHHHHHTTTCCC--CCCCHHHHHHHHTTC---SSCEEEEEETTCHHHHHHHH
T ss_pred CeeeecCCHHHHHHHHHhCchhhhhccCCCchhhhcCCcc--ccCCHHHHHHHHHhC---CCCeEEEEecCcHHHHHHHH
Confidence 37788999999999999999999873 3 2446542 345678899999988 89999988888877887788
Q ss_pred HcCccee
Q 020013 186 SLGAQGI 192 (332)
Q Consensus 186 ~~GA~gV 192 (332)
++|+|-|
T Consensus 88 a~GaD~I 94 (291)
T 3o07_A 88 ALEVDYI 94 (291)
T ss_dssp HTTCSEE
T ss_pred HcCCCEE
Confidence 8999977
|
| >3eod_A Protein HNR; response regulator, phosphoprotein, two-component regulatory system, signaling protein; 1.75A {Escherichia coli K12} | Back alignment and structure |
|---|
Probab=92.61 E-value=1.2 Score=33.48 Aligned_cols=83 Identities=17% Similarity=0.113 Sum_probs=57.7
Q ss_pred HHHHHhCCCEEEEecCCHHHHHHHHH-cCCCEEEEecCCCCcccCCCCchhhhHHHHHHHhCCCCCcEEeecCcCCHHHH
Q 020013 103 VLEAHSAGVKVVPQVGSFDEARKAVN-AGVDAIIVQGREAGGHVIGQDGLISLLPMVVDLIGDRDIPIIAAGGIVDARGY 181 (332)
Q Consensus 103 i~~~~~~g~~v~~~v~s~~~a~~a~~-~g~D~ivv~G~eaGGh~~~~~~~~~ll~~i~~~~~~~~iPviaaGGI~~~~~v 181 (332)
.+.+++.|..+.. +.+.+++....+ ..+|.|++.-.-.+ ...+.++..+++..+ ++|+|+-.+-.+.+.+
T Consensus 24 ~~~L~~~g~~v~~-~~~~~~a~~~l~~~~~dlvi~d~~l~~------~~g~~~~~~l~~~~~--~~~ii~~t~~~~~~~~ 94 (130)
T 3eod_A 24 DSWFSSLGATTVL-AADGVDALELLGGFTPDLMICDIAMPR------MNGLKLLEHIRNRGD--QTPVLVISATENMADI 94 (130)
T ss_dssp HHHHHHTTCEEEE-ESCHHHHHHHHTTCCCSEEEECCC-----------CHHHHHHHHHTTC--CCCEEEEECCCCHHHH
T ss_pred HHHHHhCCceEEE-eCCHHHHHHHHhcCCCCEEEEecCCCC------CCHHHHHHHHHhcCC--CCCEEEEEcCCCHHHH
Confidence 3445667877654 778888876654 46999998432111 123667777776543 6899988888899999
Q ss_pred HHHHHcCcceeee
Q 020013 182 VAALSLGAQGICL 194 (332)
Q Consensus 182 ~~al~~GA~gV~~ 194 (332)
.+++..||+++..
T Consensus 95 ~~~~~~g~~~~l~ 107 (130)
T 3eod_A 95 AKALRLGVEDVLL 107 (130)
T ss_dssp HHHHHHCCSEEEE
T ss_pred HHHHHcCCCEEEe
Confidence 9999999998753
|
| >2wkj_A N-acetylneuraminate lyase; directed evolution, sialic acid mimetics, aldolase, S base, carbohydrate metabolism, N-acetylneuraminic acid LYAS; HET: KPI PYR; 1.45A {Escherichia coli} PDB: 2wnq_A 2xfw_A* 2wpb_A* 2wnz_A* 2ygy_A* 2wo5_A* 2wnn_A* 3lbm_A 3lbc_A 3lcf_A 3lcl_A 3lcg_A 3lch_A 3lci_A 1hl2_A 1fdy_A 1fdz_A 1nal_1 3lcx_A 3lcw_A | Back alignment and structure |
|---|
Probab=92.57 E-value=0.44 Score=43.12 Aligned_cols=78 Identities=21% Similarity=0.275 Sum_probs=48.9
Q ss_pred HHHHHHcCCCEEEEecCCCCcccCCCCchhhhHHHHHHHhCCCCCcEEee-cCcCCHHHH---HHHHHcCcceeeecccc
Q 020013 123 ARKAVNAGVDAIIVQGREAGGHVIGQDGLISLLPMVVDLIGDRDIPIIAA-GGIVDARGY---VAALSLGAQGICLGTRF 198 (332)
Q Consensus 123 a~~a~~~g~D~ivv~G~eaGGh~~~~~~~~~ll~~i~~~~~~~~iPviaa-GGI~~~~~v---~~al~~GA~gV~~GT~f 198 (332)
+....+.|+|+|++-|..+-+.......-..++..+++...+ ++|||+. |+.++.+.+ ..+-++|||++++-+.+
T Consensus 38 v~~li~~Gv~Gl~v~GtTGE~~~Ls~eEr~~v~~~~~~~~~g-rvpViaGvg~~~t~~ai~la~~A~~~Gadavlv~~P~ 116 (303)
T 2wkj_A 38 VQFNIQQGIDGLYVGGSTGEAFVQSLSEREQVLEIVAEEAKG-KIKLIAHVGCVSTAESQQLAASAKRYGFDAVSAVTPF 116 (303)
T ss_dssp HHHHHHTTCSEEEESSTTTTGGGSCHHHHHHHHHHHHHHHTT-TSEEEEECCCSSHHHHHHHHHHHHHHTCSEEEEECCC
T ss_pred HHHHHHcCCCEEEECeeccChhhCCHHHHHHHHHHHHHHhCC-CCcEEEecCCCCHHHHHHHHHHHHhCCCCEEEecCCC
Confidence 445668899999997764444321222235566666666643 6898864 444333333 23345899999999998
Q ss_pred ccC
Q 020013 199 VAS 201 (332)
Q Consensus 199 l~t 201 (332)
...
T Consensus 117 y~~ 119 (303)
T 2wkj_A 117 YYP 119 (303)
T ss_dssp SSC
T ss_pred CCC
Confidence 754
|
| >2qkf_A 3-deoxy-D-manno-octulosonic acid 8- phosphate SYN; manno-octulosonate, synthase, lipopolysaccharide, KDOP, KDO8 KDO8PS; 1.75A {Neisseria meningitidis serogroup B} PDB: 3stf_A 3qpy_A 3ste_A 3qpz_A 3qq0_A 3fyo_A* 3qq1_A 3fyp_A* 3stc_A 3stg_A 1phw_A 1g7v_A* 1gg0_A 1phq_A* 1d9e_A 1pl9_A* 1q3n_A* 1x6u_A* 1x8f_A 1g7u_A* | Back alignment and structure |
|---|
Probab=92.54 E-value=4.4 Score=36.11 Aligned_cols=137 Identities=16% Similarity=0.145 Sum_probs=79.4
Q ss_pred HHHHHHhhcCCcEEEEeecCCCCHHHHHHHHhcCCcEEEEcc-CCCcHHHHHHHHhCCCEEEEecC---CHHHHHHHH--
Q 020013 54 LIRKTRSLTERPFGVGVVLAFPHNENIKAILSEKVAVLQVSW-GEYSEELVLEAHSAGVKVVPQVG---SFDEARKAV-- 127 (332)
Q Consensus 54 ~i~~~r~~~~~p~gvnl~~~~~~~~~~~~~~~~~~~~I~~~~-g~~~~~~i~~~~~~g~~v~~~v~---s~~~a~~a~-- 127 (332)
+++++++..+.|+..-++- ...++.+.+. +|++.++. +....++.+.+-+.+.+|+.+-+ ++++...+.
T Consensus 77 ~l~~~~~~~Gl~~~te~~d----~~~~~~l~~~-~d~~kIga~~~~n~~ll~~~a~~~kPV~lk~G~~~t~~e~~~A~~~ 151 (280)
T 2qkf_A 77 IFEKVKAEFGIPVITDVHE----PHQCQPVAEV-CDVIQLPAFLARQTDLVVAMAKTGNVVNIKKPQFLSPSQMKNIVEK 151 (280)
T ss_dssp HHHHHHHHHCCCEEEECCS----GGGHHHHHHH-CSEEEECGGGTTBHHHHHHHHHTCCEEEEECCTTSCGGGHHHHHHH
T ss_pred HHHHHHHHcCCcEEEecCC----HHHHHHHHhh-CCEEEECcccccCHHHHHHHHcCCCcEEEECCCCCCHHHHHHHHHH
Confidence 3444544456776665443 4567777777 99999964 33344678888778999987644 566655543
Q ss_pred --HcCC-CEEEEe-cCCCCcccCCCCchhhhHHHHHHHhCCCCCcEEee-----------cCcCCH------HHHHHHHH
Q 020013 128 --NAGV-DAIIVQ-GREAGGHVIGQDGLISLLPMVVDLIGDRDIPIIAA-----------GGIVDA------RGYVAALS 186 (332)
Q Consensus 128 --~~g~-D~ivv~-G~eaGGh~~~~~~~~~ll~~i~~~~~~~~iPviaa-----------GGI~~~------~~v~~al~ 186 (332)
..|. +.++++ |... +.. .....+..++.+++... ++||+.. ||-+.+ .-..++.+
T Consensus 152 i~~~Gn~~i~L~~rg~~~-~~~-~~~~dl~~i~~lk~~~~--~~pV~~D~sH~~q~~~~~~~~s~g~~~~~~~~a~aava 227 (280)
T 2qkf_A 152 FHEAGNGKLILCERGSSF-GYD-NLVVDMLGFGVMKQTCG--NLPVIFDVTHSLQTRDAGSAASGGRRAQALDLALAGMA 227 (280)
T ss_dssp HHHTTCCCEEEEECCEEC-STT-CEECCTTHHHHHHHHTT--TCCEEEEHHHHCC----------CHHHHHHHHHHHHHT
T ss_pred HHHcCCCeEEEEECCCCC-CCC-ccccCHHHHHHHHHhCC--CCCEEEECCCCccccCccccccCCchhhHHHHHHHHHH
Confidence 4574 666663 3211 110 00124556777776642 5899984 222222 22446678
Q ss_pred cCcceeeeccccc
Q 020013 187 LGAQGICLGTRFV 199 (332)
Q Consensus 187 ~GA~gV~~GT~fl 199 (332)
+||+|+++=+-|-
T Consensus 228 ~Ga~G~~IE~H~~ 240 (280)
T 2qkf_A 228 TRLAGLFLESHPD 240 (280)
T ss_dssp TCCSEEEEEC---
T ss_pred cCCCEEEEeecCC
Confidence 9999999966653
|
| >3tml_A 2-dehydro-3-deoxyphosphooctonate aldolase; ssgcid, structural genomics, seattle structural genomics CEN infectious disease; 1.90A {Burkholderia cenocepacia} PDB: 3t4c_A | Back alignment and structure |
|---|
Probab=92.54 E-value=0.79 Score=41.14 Aligned_cols=134 Identities=17% Similarity=0.201 Sum_probs=78.8
Q ss_pred HHHHHHhhcCCcEEEEeecCCCCHHHHHHHHhcCCcEEEEccCC-CcHHHHHHHHhCCCEEEEecC---CHHHHHHH---
Q 020013 54 LIRKTRSLTERPFGVGVVLAFPHNENIKAILSEKVAVLQVSWGE-YSEELVLEAHSAGVKVVPQVG---SFDEARKA--- 126 (332)
Q Consensus 54 ~i~~~r~~~~~p~gvnl~~~~~~~~~~~~~~~~~~~~I~~~~g~-~~~~~i~~~~~~g~~v~~~v~---s~~~a~~a--- 126 (332)
+++++++..+.|+..-++ +...++.+.+. +|++++.... ...++++.+-+.+.+|+.+-+ +++|.+.+
T Consensus 79 ~L~~~~~e~Glp~~tev~----d~~~v~~l~~~-vd~lkIgA~~~~n~~LLr~~a~~gkPVilK~G~~~t~~e~~~ave~ 153 (288)
T 3tml_A 79 ILSEVKRQLGLPVLTDVH----SIDEIEQVASV-VDVLQTPAFLCRQTDFIHACARSGKPVNIKKGQFLAPHDMKNVIDK 153 (288)
T ss_dssp HHHHHHHHHCCCEEEECC----SGGGHHHHHHH-CSEEEECGGGTTCHHHHHHHHTSSSCEEEECCTTCCTTHHHHHHHH
T ss_pred HHHHHHHhcCCeEEEEeC----CHHHHHHHHHh-CCEEEECcccccCHHHHHHHHccCCcEEEeCCCCCCHHHHHHHHHH
Confidence 344444445667665544 25667777777 9999997432 334577777778899886643 55555443
Q ss_pred -HHcCC-------CEEEEe-cCCCCcccCCCCchhhhHHHHHHHhCCCCCcEEee---------------cCcCC--HHH
Q 020013 127 -VNAGV-------DAIIVQ-GREAGGHVIGQDGLISLLPMVVDLIGDRDIPIIAA---------------GGIVD--ARG 180 (332)
Q Consensus 127 -~~~g~-------D~ivv~-G~eaGGh~~~~~~~~~ll~~i~~~~~~~~iPviaa---------------GGI~~--~~~ 180 (332)
.+.|. +.++++ |... +.. .....+..++.+++ . ++||+.. ||-.. ..-
T Consensus 154 i~~~Gn~~~~~~~~i~L~erg~~y-~~~-~~~vdl~~i~~lk~-~---~~pV~~D~sHs~q~p~~~~~~s~G~r~~v~~~ 227 (288)
T 3tml_A 154 ARDAAREAGLSEDRFMACERGVSF-GYN-NLVSDMRSLAIMRE-T---NAPVVFDATHSVQLPGGQGTSSGGQREFVPVL 227 (288)
T ss_dssp HHHHHHTTTCCSCCEEEEECCEEC-SSS-CEECCHHHHHHGGG-G---SSCEEEEHHHHTCCCC--------CTTHHHHH
T ss_pred HHHcCCCccCCCCcEEEEeCCCCC-CCC-cCcCCHHHHHHHHh-c---CCcEEEcCCcccccCCcccCCCCCchhhHHHH
Confidence 33454 466553 3322 111 11124666777766 5 7999883 34211 123
Q ss_pred HHHHHHcCcceeeecccc
Q 020013 181 YVAALSLGAQGICLGTRF 198 (332)
Q Consensus 181 v~~al~~GA~gV~~GT~f 198 (332)
..++.++||||+++=+.|
T Consensus 228 a~AAvA~GadGl~iE~H~ 245 (288)
T 3tml_A 228 ARAAVATGVAGLFMETHP 245 (288)
T ss_dssp HHHHHHHCCSEEEEEEES
T ss_pred HHHHHHcCCCEEEEeecc
Confidence 467889999999985443
|
| >3a5f_A Dihydrodipicolinate synthase; TIM barrel, enzyme, amino-acid biosynthesis, cytoplasm, diaminopimelate biosynthesis, lyase; HET: KPI; 1.19A {Clostridium botulinum A} PDB: 3bi8_A* 3ird_A* | Back alignment and structure |
|---|
Probab=92.53 E-value=0.43 Score=42.93 Aligned_cols=79 Identities=23% Similarity=0.332 Sum_probs=49.6
Q ss_pred HHHHHHHcCCCEEEEecCCCCcccCCCCchhhhHHHHHHHhCCCCCcEEeecCcCCHHHHH----HHHHcCcceeeeccc
Q 020013 122 EARKAVNAGVDAIIVQGREAGGHVIGQDGLISLLPMVVDLIGDRDIPIIAAGGIVDARGYV----AALSLGAQGICLGTR 197 (332)
Q Consensus 122 ~a~~a~~~g~D~ivv~G~eaGGh~~~~~~~~~ll~~i~~~~~~~~iPviaaGGI~~~~~v~----~al~~GA~gV~~GT~ 197 (332)
.++...+.|+|+|++-|..+-++......-..++..+++...+ ++|||+.=|=.+-++.. .+-++|||++++-+.
T Consensus 27 lv~~li~~Gv~gl~~~GttGE~~~Ls~~Er~~v~~~~~~~~~g-r~pvi~Gvg~~~t~~ai~la~~a~~~Gadavlv~~P 105 (291)
T 3a5f_A 27 LIEWHIKSKTDAIIVCGTTGEATTMTETERKETIKFVIDKVNK-RIPVIAGTGSNNTAASIAMSKWAESIGVDGLLVITP 105 (291)
T ss_dssp HHHHHHHTTCCEEEESSGGGTGGGSCHHHHHHHHHHHHHHHTT-SSCEEEECCCSSHHHHHHHHHHHHHTTCSEEEEECC
T ss_pred HHHHHHHcCCCEEEECccccChhhCCHHHHHHHHHHHHHHhCC-CCcEEEeCCcccHHHHHHHHHHHHhcCCCEEEEcCC
Confidence 3455678899999997664433321222235566666666643 68987544433444433 334589999999999
Q ss_pred cccC
Q 020013 198 FVAS 201 (332)
Q Consensus 198 fl~t 201 (332)
+...
T Consensus 106 ~y~~ 109 (291)
T 3a5f_A 106 YYNK 109 (291)
T ss_dssp CSSC
T ss_pred CCCC
Confidence 8754
|
| >3vav_A 3-methyl-2-oxobutanoate hydroxymethyltransferase; structural genomics, seattle structural genomics center for infectious disease; 1.80A {Burkholderia thailandensis} SCOP: c.1.12.8 PDB: 3ez4_A | Back alignment and structure |
|---|
Probab=92.52 E-value=1.3 Score=39.32 Aligned_cols=89 Identities=19% Similarity=0.106 Sum_probs=57.4
Q ss_pred HHHHHhC-CCEEEEecCCHHHHHHHHHcCCCEEEEecCCCC----cccCC-CCch---hhhHHHHHHHhCCCCCcEEee-
Q 020013 103 VLEAHSA-GVKVVPQVGSFDEARKAVNAGVDAIIVQGREAG----GHVIG-QDGL---ISLLPMVVDLIGDRDIPIIAA- 172 (332)
Q Consensus 103 i~~~~~~-g~~v~~~v~s~~~a~~a~~~g~D~ivv~G~eaG----Gh~~~-~~~~---~~ll~~i~~~~~~~~iPviaa- 172 (332)
++.+++. ...+++.+.+.-.|+.+.++|+|+|.+ |...| |+.+. ..+. +...+.+++..+ +.||++.
T Consensus 21 lr~~~~~g~~i~m~tayDa~sA~l~e~aG~d~ilv-GdSl~~~~lG~~dt~~vtldem~~h~~aV~r~~~--~~~vvaD~ 97 (275)
T 3vav_A 21 LQAMREAGEKIAMLTCYDASFAALLDRANVDVQLI-GDSLGNVLQGQTTTLPVTLDDIAYHTACVARAQP--RALIVADL 97 (275)
T ss_dssp HHHHHHHTCCEEEEECCSHHHHHHHHHTTCSEEEE-CTTHHHHTTCCSSSTTCCHHHHHHHHHHHHHTCC--SSEEEEEC
T ss_pred HHHHHHCCCcEEEEeCcCHHHHHHHHHcCCCEEEE-CcHHHHHHcCCCCCCccCHHHHHHHHHHHHhcCC--CCCEEEec
Confidence 4444544 466778999999999999999999955 43222 34321 1222 223444555442 4789987
Q ss_pred --cCcCCHHHH----HHHHHcCcceeee
Q 020013 173 --GGIVDARGY----VAALSLGAQGICL 194 (332)
Q Consensus 173 --GGI~~~~~v----~~al~~GA~gV~~ 194 (332)
||-.+++++ .++++.||++|-+
T Consensus 98 pfgsY~s~~~a~~~a~rl~kaGa~aVkl 125 (275)
T 3vav_A 98 PFGTYGTPADAFASAVKLMRAGAQMVKF 125 (275)
T ss_dssp CTTSCSSHHHHHHHHHHHHHTTCSEEEE
T ss_pred CCCCCCCHHHHHHHHHHHHHcCCCEEEE
Confidence 445577765 4677789999987
|
| >3qst_A Triosephosphate isomerase, putative; TIM barrel; 1.75A {Trichomonas vaginalis} PDB: 3qsr_A | Back alignment and structure |
|---|
Probab=92.52 E-value=0.58 Score=41.23 Aligned_cols=118 Identities=18% Similarity=0.243 Sum_probs=70.3
Q ss_pred HHHHHHhcCCcEEEEc-------cCCCcHHH----HHHHHhCCCEEEEecCC-HHHH-------------HHHHHc-C--
Q 020013 79 NIKAILSEKVAVLQVS-------WGEYSEEL----VLEAHSAGVKVVPQVGS-FDEA-------------RKAVNA-G-- 130 (332)
Q Consensus 79 ~~~~~~~~~~~~I~~~-------~g~~~~~~----i~~~~~~g~~v~~~v~s-~~~a-------------~~a~~~-g-- 130 (332)
..+.+.+.|+++|.++ |+. ..+. ++.+.+.|+.++..++. .++- +..++. .
T Consensus 81 S~~mL~d~G~~~ViiGHSERR~~f~E-td~~v~~Kv~~Al~~GL~pIlCvGEtleere~g~t~~vv~~Ql~~~l~~~~~~ 159 (255)
T 3qst_A 81 TVPMIKSFGIEWTILGHSERRDILKE-DDEFLAAKAKFALENGMKIIYCCGEHLSEREAGKASEFVSAQIEKMIPAIPAG 159 (255)
T ss_dssp CHHHHHTTTCCEEEESCHHHHHTSCC-CHHHHHHHHHHHHHTTCEEEEEECCCHHHHHTTCHHHHHHHHHHHHGGGSCTT
T ss_pred CHHHHHHcCCCEEEECchhhhhhcCC-CHHHHHHHHHHHHHCCCeEEEEcCCcHHHHHcCCHHHHHHHHHHHHHccCCHH
Confidence 4667888999999985 454 3444 45566789998888873 3321 112211 1
Q ss_pred --CCEEEE-ecCCCCcccCCCCch-------hhhHHHHHHH-hC---CCCCcEEeecCcCCHHHHHHHHH-cCcceeeec
Q 020013 131 --VDAIIV-QGREAGGHVIGQDGL-------ISLLPMVVDL-IG---DRDIPIIAAGGIVDARGYVAALS-LGAQGICLG 195 (332)
Q Consensus 131 --~D~ivv-~G~eaGGh~~~~~~~-------~~ll~~i~~~-~~---~~~iPviaaGGI~~~~~v~~al~-~GA~gV~~G 195 (332)
...+|+ +..-+-|. |...+ ...|++.... +. ..+++|+..|+| +++|+.+.+. .+.||+.+|
T Consensus 160 ~~~~~vIAYEPvWAIGT--G~~Atpe~aqevh~~IR~~l~~~~~~~~a~~vrIlYGGSV-~~~N~~~l~~~~diDG~LVG 236 (255)
T 3qst_A 160 KWDDVVIAYEPIWAIGT--GKVASTQDAQEMCKVIRDILAAKVGADIANKVRILYGGSV-KPNNCNELAACPDVDGFLVG 236 (255)
T ss_dssp CGGGEEEEECCGGGSSS--SCCCCHHHHHHHHHHHHHHHHHHHCHHHHHHCEEEECSCC-CTTTHHHHHHSTTCCEEEEC
T ss_pred HhCCEEEEECCHHHhcC--CCCCCHHHHHHHHHHHHHHHHHhcChhhcCcccEEEcCCc-CHhHHHHHhcCCCCCEEEee
Confidence 124444 44344443 21121 2233332111 10 015899999999 8899988886 689999999
Q ss_pred ccccc
Q 020013 196 TRFVA 200 (332)
Q Consensus 196 T~fl~ 200 (332)
++-|.
T Consensus 237 gASL~ 241 (255)
T 3qst_A 237 GASLE 241 (255)
T ss_dssp GGGGS
T ss_pred HHHhh
Confidence 98775
|
| >2qxy_A Response regulator; regulation of transcription, NYSGXRC, protein structure initiative II (PSI II), structural genomics; 1.95A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=92.49 E-value=0.98 Score=34.63 Aligned_cols=80 Identities=16% Similarity=0.193 Sum_probs=58.2
Q ss_pred HHHHhCCCEEEEecCCHHHHHHHHH-cCCCEEEEecCCCCcccCCCCchhhhHHHHHHHhCCCCCcEEeecCcCCHHHHH
Q 020013 104 LEAHSAGVKVVPQVGSFDEARKAVN-AGVDAIIVQGREAGGHVIGQDGLISLLPMVVDLIGDRDIPIIAAGGIVDARGYV 182 (332)
Q Consensus 104 ~~~~~~g~~v~~~v~s~~~a~~a~~-~g~D~ivv~G~eaGGh~~~~~~~~~ll~~i~~~~~~~~iPviaaGGI~~~~~v~ 182 (332)
+.+...|..+. .+.+.+++..... ..+|.|++.- -.+ ...+.++..+++... ++|||+-.+-.+.+.+.
T Consensus 22 ~~L~~~g~~v~-~~~~~~~a~~~l~~~~~dlvi~d~-~~~------~~g~~~~~~l~~~~~--~~pii~ls~~~~~~~~~ 91 (142)
T 2qxy_A 22 NALEKDGFNVI-WAKNEQEAFTFLRREKIDLVFVDV-FEG------EESLNLIRRIREEFP--DTKVAVLSAYVDKDLII 91 (142)
T ss_dssp HHHGGGTCEEE-EESSHHHHHHHHTTSCCSEEEEEC-TTT------HHHHHHHHHHHHHCT--TCEEEEEESCCCHHHHH
T ss_pred HHHHhCCCEEE-EECCHHHHHHHHhccCCCEEEEeC-CCC------CcHHHHHHHHHHHCC--CCCEEEEECCCCHHHHH
Confidence 34555688776 6778888776654 4699999964 211 123667777776543 69999888888888999
Q ss_pred HHHHcCcceee
Q 020013 183 AALSLGAQGIC 193 (332)
Q Consensus 183 ~al~~GA~gV~ 193 (332)
.++..|++++.
T Consensus 92 ~~~~~g~~~~l 102 (142)
T 2qxy_A 92 NSVKAGAVDYI 102 (142)
T ss_dssp HHHHHTCSCEE
T ss_pred HHHHCCcceeE
Confidence 99999999865
|
| >1f6k_A N-acetylneuraminate lyase; beta barrel; 1.60A {Haemophilus influenzae} SCOP: c.1.10.1 PDB: 1f5z_A 1f6p_A 1f73_A* 1f74_A* 1f7b_A* | Back alignment and structure |
|---|
Probab=92.48 E-value=0.4 Score=43.13 Aligned_cols=79 Identities=23% Similarity=0.297 Sum_probs=49.3
Q ss_pred HHHHHHH-cCCCEEEEecCCCCcccCCCCchhhhHHHHHHHhCCCCCcEEeecCcCCHHHHH----HHHHcCcceeeecc
Q 020013 122 EARKAVN-AGVDAIIVQGREAGGHVIGQDGLISLLPMVVDLIGDRDIPIIAAGGIVDARGYV----AALSLGAQGICLGT 196 (332)
Q Consensus 122 ~a~~a~~-~g~D~ivv~G~eaGGh~~~~~~~~~ll~~i~~~~~~~~iPviaaGGI~~~~~v~----~al~~GA~gV~~GT 196 (332)
.++...+ .|+|+|++-|..+-++......-..++..+++...+ ++|||+.=|=.+-+++. .+-.+|||++++-+
T Consensus 29 lv~~li~~~Gv~gl~~~GttGE~~~Ls~~Er~~v~~~~~~~~~g-rvpviaGvg~~~t~~ai~la~~a~~~Gadavlv~~ 107 (293)
T 1f6k_A 29 IIRHNIDKMKVDGLYVGGSTGENFMLSTEEKKEIFRIAKDEAKD-QIALIAQVGSVNLKEAVELGKYATELGYDCLSAVT 107 (293)
T ss_dssp HHHHHHHTSCCSEEEESSGGGTGGGSCHHHHHHHHHHHHHHHTT-SSEEEEECCCSCHHHHHHHHHHHHHHTCSEEEEEC
T ss_pred HHHHHHhhCCCcEEEeCccccchhhCCHHHHHHHHHHHHHHhCC-CCeEEEecCCCCHHHHHHHHHHHHhcCCCEEEECC
Confidence 3445678 899999997664333321222235566666666643 68988544433444443 33458999999999
Q ss_pred ccccC
Q 020013 197 RFVAS 201 (332)
Q Consensus 197 ~fl~t 201 (332)
.+...
T Consensus 108 P~y~~ 112 (293)
T 1f6k_A 108 PFYYK 112 (293)
T ss_dssp CCSSC
T ss_pred CCCCC
Confidence 98754
|
| >3rqi_A Response regulator protein; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: PHD CIT; 1.70A {Burkholderia pseudomallei} | Back alignment and structure |
|---|
Probab=92.47 E-value=1 Score=36.74 Aligned_cols=82 Identities=26% Similarity=0.208 Sum_probs=59.4
Q ss_pred HHHHhCCCEEEEecCCHHHHHHHHH-cCCCEEEEecCCCCcccCCCCchhhhHHHHHHHhCCCCCcEEeecCcCCHHHHH
Q 020013 104 LEAHSAGVKVVPQVGSFDEARKAVN-AGVDAIIVQGREAGGHVIGQDGLISLLPMVVDLIGDRDIPIIAAGGIVDARGYV 182 (332)
Q Consensus 104 ~~~~~~g~~v~~~v~s~~~a~~a~~-~g~D~ivv~G~eaGGh~~~~~~~~~ll~~i~~~~~~~~iPviaaGGI~~~~~v~ 182 (332)
..+...|..| ..+.+.+++..... ..+|.|+++=.-.+ ...+.++..+++..+ ++|||+-.+-.+.+.+.
T Consensus 25 ~~L~~~g~~v-~~~~~~~~al~~~~~~~~dlvl~D~~lp~------~~g~~~~~~l~~~~~--~~~ii~lt~~~~~~~~~ 95 (184)
T 3rqi_A 25 RGLERRGYAV-RQAHNKDEALKLAGAEKFEFITVXLHLGN------DSGLSLIAPLCDLQP--DARILVLTGYASIATAV 95 (184)
T ss_dssp HHHHHTTCEE-EEECSHHHHHHHHTTSCCSEEEECSEETT------EESHHHHHHHHHHCT--TCEEEEEESSCCHHHHH
T ss_pred HHHHHCCCEE-EEeCCHHHHHHHHhhCCCCEEEEeccCCC------ccHHHHHHHHHhcCC--CCCEEEEeCCCCHHHHH
Confidence 3455677766 56788888877664 46999998422111 123677777776543 68999988888999999
Q ss_pred HHHHcCcceeee
Q 020013 183 AALSLGAQGICL 194 (332)
Q Consensus 183 ~al~~GA~gV~~ 194 (332)
+++.+||+++..
T Consensus 96 ~a~~~Ga~~~l~ 107 (184)
T 3rqi_A 96 QAVKDGADNYLA 107 (184)
T ss_dssp HHHHHTCSEEEE
T ss_pred HHHHhCHHHhee
Confidence 999999998774
|
| >3h5d_A DHDPS, dihydrodipicolinate synthase; lysine biosynthesis, amino-ACI biosynthesis, schiff base, cytoplasm, diaminopimelate biosy lyase; HET: MES; 1.99A {Streptococcus pneumoniae} | Back alignment and structure |
|---|
Probab=92.45 E-value=0.31 Score=44.31 Aligned_cols=122 Identities=14% Similarity=0.204 Sum_probs=66.6
Q ss_pred HHHHHHHcCCCEEEEecCCCCcccCCCCchhhhHHHHHHHhCCCCCcEEeecCcCCHHHHH----HHHHcCc-ceeeecc
Q 020013 122 EARKAVNAGVDAIIVQGREAGGHVIGQDGLISLLPMVVDLIGDRDIPIIAAGGIVDARGYV----AALSLGA-QGICLGT 196 (332)
Q Consensus 122 ~a~~a~~~g~D~ivv~G~eaGGh~~~~~~~~~ll~~i~~~~~~~~iPviaaGGI~~~~~v~----~al~~GA-~gV~~GT 196 (332)
.++...+.|+|+|++-|..+-++......-..++..+++...+ ++|||+.-|=.+-++.. .+-.+|+ |++++-+
T Consensus 33 lv~~li~~Gv~Gl~v~GtTGE~~~Ls~~Er~~v~~~~~~~~~g-rvpViaGvg~~~t~~ai~la~~A~~~Ga~davlv~~ 111 (311)
T 3h5d_A 33 LIEHLLAHHTDGILLAGTTAESPTLTHDEELELFAAVQKVVNG-RVPLIAGVGTNDTRDSIEFVKEVAEFGGFAAGLAIV 111 (311)
T ss_dssp HHHHHHHTTCCCEEESSTTTTGGGSCHHHHHHHHHHHHHHSCS-SSCEEEECCCSSHHHHHHHHHHHHHSCCCSEEEEEC
T ss_pred HHHHHHHcCCCEEEECccccChhhCCHHHHHHHHHHHHHHhCC-CCcEEEeCCCcCHHHHHHHHHHHHhcCCCcEEEEcC
Confidence 3455678999999997764444331212234566666666543 68988754433444443 3345797 9999999
Q ss_pred ccccCc-cCCCCHHHHHHHhcCCCceEEEEecccCCCCCCceeecChHHHhhhc
Q 020013 197 RFVASE-ESYAHPEYKRKLVEMDKTEYTDVFGRARWPGAPHRVLQTPFFSNWKN 249 (332)
Q Consensus 197 ~fl~t~-Es~~~~~~k~~~~~~~~t~~t~~~~~~~~~g~~~R~l~n~~~~~~~~ 249 (332)
.+.... +...-+ |=+.|.++.+.- ..+++ .|++.+.-+....+.++.+
T Consensus 112 P~y~~~s~~~l~~-~f~~va~a~~lP-iilYn---~P~~tg~~l~~~~~~~La~ 160 (311)
T 3h5d_A 112 PYYNKPSQEGMYQ-HFKAIADASDLP-IIIYN---IPGRVVVELTPETMLRLAD 160 (311)
T ss_dssp CCSSCCCHHHHHH-HHHHHHHSCSSC-EEEEE---CHHHHSSCCCHHHHHHHHT
T ss_pred CCCCCCCHHHHHH-HHHHHHHhCCCC-EEEEe---cccccCCCCCHHHHHHHhc
Confidence 877542 111112 223344444433 23443 2343444555555555443
|
| >2pgw_A Muconate cycloisomerase; enolase superfamily, octamer, small metabolism, PSI-II, NYSGXRC, structural genomics, PR structure initiative; 1.95A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=92.42 E-value=1.2 Score=41.62 Aligned_cols=108 Identities=16% Similarity=0.179 Sum_probs=74.9
Q ss_pred HHHHHhcCCcEEEEccCCCcH---HHHHHHHhC--CCEEEEecC---CHHHHHH----HHHcCCCEEEEecCCCCcccCC
Q 020013 80 IKAILSEKVAVLQVSWGEYSE---ELVLEAHSA--GVKVVPQVG---SFDEARK----AVNAGVDAIIVQGREAGGHVIG 147 (332)
Q Consensus 80 ~~~~~~~~~~~I~~~~g~~~~---~~i~~~~~~--g~~v~~~v~---s~~~a~~----a~~~g~D~ivv~G~eaGGh~~~ 147 (332)
...+.+.|.+.|.++.|..+. +.++.+++. ++++...++ +.+++.. ..+.|+++| +-+-
T Consensus 155 a~~~~~~Gf~~iKik~g~~~~~~~e~v~avr~a~gd~~l~vD~n~~~~~~~a~~~~~~l~~~~i~~i--EqP~------- 225 (384)
T 2pgw_A 155 AAVGHAQGERVFYLKVGRGEKLDLEITAAVRGEIGDARLRLDANEGWSVHDAINMCRKLEKYDIEFI--EQPT------- 225 (384)
T ss_dssp HHHHHHTTCCEEEEECCSCHHHHHHHHHHHHTTSTTCEEEEECTTCCCHHHHHHHHHHHGGGCCSEE--ECCS-------
T ss_pred HHHHHHcCCCEEEECcCCCHHHHHHHHHHHHHHcCCcEEEEecCCCCCHHHHHHHHHHHHhcCCCEE--eCCC-------
Confidence 344567799999998775333 455566654 477776664 5666543 345688876 2211
Q ss_pred CCchhhhHHHHHHHhCCCCCcEEeecCcCCHHHHHHHHHcC-cceeeeccccc
Q 020013 148 QDGLISLLPMVVDLIGDRDIPIIAAGGIVDARGYVAALSLG-AQGICLGTRFV 199 (332)
Q Consensus 148 ~~~~~~ll~~i~~~~~~~~iPviaaGGI~~~~~v~~al~~G-A~gV~~GT~fl 199 (332)
+...+..+.++++.+ ++||++.+.+.+.+++.+++..| +|.|++....+
T Consensus 226 ~~~~~~~~~~l~~~~---~iPI~~de~i~~~~~~~~~i~~~~~d~v~ik~~~~ 275 (384)
T 2pgw_A 226 VSWSIPAMAHVREKV---GIPIVADQAAFTLYDVYEICRQRAADMICIGPREI 275 (384)
T ss_dssp CTTCHHHHHHHHHHC---SSCEEESTTCCSHHHHHHHHHTTCCSEEEECHHHH
T ss_pred ChhhHHHHHHHHhhC---CCCEEEeCCcCCHHHHHHHHHcCCCCEEEEcchhh
Confidence 113466777888776 79999999999999999999876 79999865544
|
| >2r8w_A AGR_C_1641P; APC7498, dihydrodipicolinate synthase, agrobacterium tumefac C58, structural genomics, PSI-2; HET: MSE; 1.80A {Agrobacterium tumefaciens str} | Back alignment and structure |
|---|
Probab=92.41 E-value=0.41 Score=43.94 Aligned_cols=78 Identities=13% Similarity=0.130 Sum_probs=49.2
Q ss_pred HHHHHHcCCCEEEEecCCCCcccCCCCchhhhHHHHHHHhCCCCCcEEe-ecCcCCHHHH---HHHHHcCcceeeecccc
Q 020013 123 ARKAVNAGVDAIIVQGREAGGHVIGQDGLISLLPMVVDLIGDRDIPIIA-AGGIVDARGY---VAALSLGAQGICLGTRF 198 (332)
Q Consensus 123 a~~a~~~g~D~ivv~G~eaGGh~~~~~~~~~ll~~i~~~~~~~~iPvia-aGGI~~~~~v---~~al~~GA~gV~~GT~f 198 (332)
++...+.|+|+|++-|..+-+.......-..++..+++...+ ++|||+ .|+.++.+.+ ..+-.+|||++.+-+.+
T Consensus 61 v~~li~~Gv~Gl~v~GtTGE~~~Ls~eEr~~vi~~~ve~~~g-rvpViaGvg~~st~eai~la~~A~~~Gadavlv~~P~ 139 (332)
T 2r8w_A 61 IARLDAAEVDSVGILGSTGIYMYLTREERRRAIEAAATILRG-RRTLMAGIGALRTDEAVALAKDAEAAGADALLLAPVS 139 (332)
T ss_dssp HHHHHHHTCSEEEESSTTTTGGGSCHHHHHHHHHHHHHHHTT-SSEEEEEECCSSHHHHHHHHHHHHHHTCSEEEECCCC
T ss_pred HHHHHHcCCCEEEECccccChhhCCHHHHHHHHHHHHHHhCC-CCcEEEecCCCCHHHHHHHHHHHHhcCCCEEEECCCC
Confidence 445667899999997764444331222235566666766643 699885 4445443333 23445899999999998
Q ss_pred ccC
Q 020013 199 VAS 201 (332)
Q Consensus 199 l~t 201 (332)
...
T Consensus 140 Y~~ 142 (332)
T 2r8w_A 140 YTP 142 (332)
T ss_dssp SSC
T ss_pred CCC
Confidence 754
|
| >3gr7_A NADPH dehydrogenase; flavin, FMN, beta-alpha-barrel, oxidoreductase, flavoprotein; HET: FMN; 2.30A {Geobacillus kaustophilus} PDB: 3gr8_A* | Back alignment and structure |
|---|
Probab=92.39 E-value=2 Score=39.49 Aligned_cols=86 Identities=19% Similarity=0.210 Sum_probs=61.7
Q ss_pred HHHHHHHHHhhcCCcEEEEeecCC------CC---HHHHHHHHhcCCcEEEEccCC--------C---cHHHHHHHHh-C
Q 020013 51 LRDLIRKTRSLTERPFGVGVVLAF------PH---NENIKAILSEKVAVLQVSWGE--------Y---SEELVLEAHS-A 109 (332)
Q Consensus 51 ~~~~i~~~r~~~~~p~gvnl~~~~------~~---~~~~~~~~~~~~~~I~~~~g~--------~---~~~~i~~~~~-~ 109 (332)
+.+.++.+|+..+.|++|-+-... +. .+.++.+.+.|+|+|+++.|. . ..++++.+++ .
T Consensus 197 ~~eiv~avr~~v~~pv~vRls~~~~~~~g~~~~~~~~la~~L~~~Gvd~i~vs~g~~~~~~~~~~~~~~~~~~~~ik~~~ 276 (340)
T 3gr7_A 197 LGEVIDAVREVWDGPLFVRISASDYHPDGLTAKDYVPYAKRMKEQGVDLVDVSSGAIVPARMNVYPGYQVPFAELIRREA 276 (340)
T ss_dssp HHHHHHHHHHHCCSCEEEEEESCCCSTTSCCGGGHHHHHHHHHHTTCCEEEEECCCSSCCCCCCCTTTTHHHHHHHHHHT
T ss_pred HHHHHHHHHHhcCCceEEEeccccccCCCCCHHHHHHHHHHHHHcCCCEEEEecCCccCCCCCCCccccHHHHHHHHHHc
Confidence 567788888877889998876532 11 234566777899999987431 1 1356666665 4
Q ss_pred CCEEEE--ecCCHHHHHHHHHcC-CCEEEE
Q 020013 110 GVKVVP--QVGSFDEARKAVNAG-VDAIIV 136 (332)
Q Consensus 110 g~~v~~--~v~s~~~a~~a~~~g-~D~ivv 136 (332)
+++|+. .+.+.+++.++++.| +|.|.+
T Consensus 277 ~iPVi~~GgI~s~e~a~~~L~~G~aD~V~i 306 (340)
T 3gr7_A 277 DIPTGAVGLITSGWQAEEILQNGRADLVFL 306 (340)
T ss_dssp TCCEEEESSCCCHHHHHHHHHTTSCSEEEE
T ss_pred CCcEEeeCCCCCHHHHHHHHHCCCeeEEEe
Confidence 677775 467899999999998 999987
|
| >3cg0_A Response regulator receiver modulated diguanylate with PAS/PAC sensor; signal receiver domain, diguanylate cyclase; 2.15A {Desulfovibrio desulfuricans subsp} | Back alignment and structure |
|---|
Probab=92.37 E-value=2 Score=32.54 Aligned_cols=83 Identities=17% Similarity=0.146 Sum_probs=59.3
Q ss_pred HHHHhCCCEEEEecCCHHHHHHHH-HcCCCEEEEecCCCCcccCCCCchhhhHHHHHHHhCCCCCcEEeecCcCCHHHHH
Q 020013 104 LEAHSAGVKVVPQVGSFDEARKAV-NAGVDAIIVQGREAGGHVIGQDGLISLLPMVVDLIGDRDIPIIAAGGIVDARGYV 182 (332)
Q Consensus 104 ~~~~~~g~~v~~~v~s~~~a~~a~-~~g~D~ivv~G~eaGGh~~~~~~~~~ll~~i~~~~~~~~iPviaaGGI~~~~~v~ 182 (332)
+.+++.|..+...+.+.+++.... +..+|.|++.-.-.++ ...+.++..+++. . ++|||+-.+-.+.+...
T Consensus 27 ~~L~~~g~~v~~~~~~~~~a~~~~~~~~~dlii~d~~~~~~-----~~g~~~~~~l~~~-~--~~~ii~ls~~~~~~~~~ 98 (140)
T 3cg0_A 27 IQLESLGYDVLGVFDNGEEAVRCAPDLRPDIALVDIMLCGA-----LDGVETAARLAAG-C--NLPIIFITSSQDVETFQ 98 (140)
T ss_dssp HHHHHHTCEEEEEESSHHHHHHHHHHHCCSEEEEESSCCSS-----SCHHHHHHHHHHH-S--CCCEEEEECCCCHHHHH
T ss_pred HHHHHCCCeeEEEECCHHHHHHHHHhCCCCEEEEecCCCCC-----CCHHHHHHHHHhC-C--CCCEEEEecCCCHHHHH
Confidence 345556888876688888877654 4569999986332111 1336677777765 3 79999888888888899
Q ss_pred HHHHcCcceeee
Q 020013 183 AALSLGAQGICL 194 (332)
Q Consensus 183 ~al~~GA~gV~~ 194 (332)
.++..|++++..
T Consensus 99 ~~~~~g~~~~l~ 110 (140)
T 3cg0_A 99 RAKRVNPFGYLA 110 (140)
T ss_dssp HHHTTCCSEEEE
T ss_pred HHHhcCCCEEEe
Confidence 999999998764
|
| >1m5w_A Pyridoxal phosphate biosynthetic protein PDXJ; TIM barrel, protein-substrate complex, multi-binding states; HET: DXP; 1.96A {Escherichia coli} SCOP: c.1.24.1 PDB: 1ho1_A 1ho4_A* 1ixn_A* 1ixo_A* 1ixp_A 1ixq_A 3f4n_A* | Back alignment and structure |
|---|
Probab=92.35 E-value=2.4 Score=36.71 Aligned_cols=170 Identities=14% Similarity=0.155 Sum_probs=100.0
Q ss_pred CCcHHHHHHHHh-CCCceeecCCCC----CCHHHHHHHHHHHHhhcCCcEEEEeecCCCCHHHHHHHHhcCCcEEEEc--
Q 020013 22 ISGPELVAAVAN-AGGLGLLRAPDW----EAPDYLRDLIRKTRSLTERPFGVGVVLAFPHNENIKAILSEKVAVLQVS-- 94 (332)
Q Consensus 22 ~s~~~la~avs~-aGglG~i~~~~~----~~~e~~~~~i~~~r~~~~~p~gvnl~~~~~~~~~~~~~~~~~~~~I~~~-- 94 (332)
..+|--++.++. +|+=|+..-.+- ...+ .+..+++....+|++-... .++.++.+++.+|+.|++-
T Consensus 24 ~Pdpv~aA~~ae~aGAdgITvHlReDrRHI~d~----Dv~~L~~~~~~~lNlE~a~---t~emi~ia~~~kP~~vtLVPE 96 (243)
T 1m5w_A 24 YPDPVQAAFIAEQAGADGITVHLREDRRHITDR----DVRILRQTLDTRMNLEMAV---TEEMLAIAVETKPHFCCLVPE 96 (243)
T ss_dssp CSCHHHHHHHHHTTTCSEEEEECCTTCSSSCHH----HHHHHHHHCSSEEEEEECS---SHHHHHHHHHHCCSEEEECCC
T ss_pred CCCHHHHHHHHHHcCCCEEEeCCCCCcccCCHH----HHHHHHHhcCCCEEeccCC---CHHHHHHHHHcCCCEEEECCC
Confidence 356665666665 455555432211 1222 2445555445555544332 3789999999999999863
Q ss_pred --------cCCCc-------HHHHHHHHhCCCEEEEecC-CHHHHHHHHHcCCCEEEEe-cCCCCcccC-CCCchhhhHH
Q 020013 95 --------WGEYS-------EELVLEAHSAGVKVVPQVG-SFDEARKAVNAGVDAIIVQ-GREAGGHVI-GQDGLISLLP 156 (332)
Q Consensus 95 --------~g~~~-------~~~i~~~~~~g~~v~~~v~-s~~~a~~a~~~g~D~ivv~-G~eaGGh~~-~~~~~~~ll~ 156 (332)
.|... .++++++++.|+.|-.-+. +++....+.+.|+|.|=+. |..+--+.. ....-+..+.
T Consensus 97 ~r~e~TTegGldv~~~~~~l~~~i~~L~~~GIrVSLFIDpd~~qi~aA~~~GA~~IELhTG~Ya~a~~~~~~~~el~~i~ 176 (243)
T 1m5w_A 97 KRQEVTTEGGLDVAGQRDKMRDACKRLADAGIQVSLFIDADEEQIKAAAEVGAPFIEIHTGCYADAKTDAEQAQELARIA 176 (243)
T ss_dssp CSSCSSCCSCCCSGGGHHHHHHHHHHHHHTTCEEEEEECSCHHHHHHHHHTTCSEEEEECHHHHHCCSHHHHHHHHHHHH
T ss_pred CCCCcCCCcchhHHhhHHHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHhCcCEEEEechhhhcCCCchhHHHHHHHHH
Confidence 12221 4678899999999876664 7888889999999999873 321111100 0001122222
Q ss_pred HHHHHhCCCCCcEEeecCcCCHHHHHHHHHc-Ccceeeeccccc
Q 020013 157 MVVDLIGDRDIPIIAAGGIVDARGYVAALSL-GAQGICLGTRFV 199 (332)
Q Consensus 157 ~i~~~~~~~~iPviaaGGI~~~~~v~~al~~-GA~gV~~GT~fl 199 (332)
...+.....++-|=+.-|+ |.+|+....+. +-.-+-+|-+++
T Consensus 177 ~aa~~A~~lGL~VnAGHgL-~y~Nv~~ia~ip~i~ElnIGHaii 219 (243)
T 1m5w_A 177 KAATFAASLGLKVNAGHGL-TYHNVKAIAAIPEMHELNIGHAII 219 (243)
T ss_dssp HHHHHHHHTTCEEEEESSC-CTTTHHHHHTCTTEEEEEECHHHH
T ss_pred HHHHHHHHcCCEEecCCCC-CHHHHHHHhhCCCCeEEccCHHHH
Confidence 2222221236889999999 88998876543 455666665544
|
| >2zbt_A Pyridoxal biosynthesis lyase PDXS; pyridoxine biosynthesis, structural genomics, NPPSFA; 1.65A {Thermus thermophilus} PDB: 2iss_A* | Back alignment and structure |
|---|
Probab=92.35 E-value=0.39 Score=43.13 Aligned_cols=80 Identities=20% Similarity=0.198 Sum_probs=57.6
Q ss_pred CEEEEecCCHHHHHHHHHcCCCEEEEec------CCCCcccCCCCchhhhHHHHHHHhCCCCCcEEeecCcCCHHHHHHH
Q 020013 111 VKVVPQVGSFDEARKAVNAGVDAIIVQG------REAGGHVIGQDGLISLLPMVVDLIGDRDIPIIAAGGIVDARGYVAA 184 (332)
Q Consensus 111 ~~v~~~v~s~~~a~~a~~~g~D~ivv~G------~eaGGh~~~~~~~~~ll~~i~~~~~~~~iPviaaGGI~~~~~v~~a 184 (332)
.+++..+...+.++.+.+.|++.|.+.. ...+|-. .......+.++++.. ++|++...++.+.+.+..+
T Consensus 22 ~~~i~~~~~~~~a~~~~~~Ga~~i~~~e~v~~~~~~~~G~~--~~~~~~~i~~i~~~~---~~Pvi~~~~~~~~~~~~~~ 96 (297)
T 2zbt_A 22 GGVIMDVTTPEQAVIAEEAGAVAVMALERVPADIRAQGGVA--RMSDPKIIKEIMAAV---SIPVMAKVRIGHFVEAMIL 96 (297)
T ss_dssp TEEEEEESSHHHHHHHHHHTCSEEEECSSCHHHHHHTTCCC--CCCCHHHHHHHHTTC---SSCEEEEEETTCHHHHHHH
T ss_pred CCeeeeechHHHHHHHHHCCCcEEEeccccchHHHhhcCCc--cCCCHHHHHHHHHhc---CCCeEEEeccCCHHHHHHH
Confidence 4567777788888899999999997621 0112211 122356677777655 7999998888888999999
Q ss_pred HHcCcceeeecc
Q 020013 185 LSLGAQGICLGT 196 (332)
Q Consensus 185 l~~GA~gV~~GT 196 (332)
+++|||+| -|+
T Consensus 97 ~~aGad~v-~~~ 107 (297)
T 2zbt_A 97 EAIGVDFI-DES 107 (297)
T ss_dssp HHTTCSEE-EEE
T ss_pred HHCCCCEE-eee
Confidence 99999999 443
|
| >3f6c_A Positive transcription regulator EVGA; structural genomics, PSI-2, protein structure initiative, PO transcription regulator EVGA; 1.45A {Escherichia coli k-12} | Back alignment and structure |
|---|
Probab=92.34 E-value=0.66 Score=35.22 Aligned_cols=98 Identities=11% Similarity=-0.039 Sum_probs=63.2
Q ss_pred HHHHHhCCCEEEEecCCHHHHHHH-HHcCCCEEEEecCCCCcccCCCCchhhhHHHHHHHhCCCCCcEEeecCcCCHHHH
Q 020013 103 VLEAHSAGVKVVPQVGSFDEARKA-VNAGVDAIIVQGREAGGHVIGQDGLISLLPMVVDLIGDRDIPIIAAGGIVDARGY 181 (332)
Q Consensus 103 i~~~~~~g~~v~~~v~s~~~a~~a-~~~g~D~ivv~G~eaGGh~~~~~~~~~ll~~i~~~~~~~~iPviaaGGI~~~~~v 181 (332)
.+.+++.|..+...+.+.+++... .+..+|.|++.-.-. ....+.++..+++..+ ++|||.-.+-.+.+..
T Consensus 18 ~~~L~~~g~~v~~~~~~~~~a~~~~~~~~~dlii~d~~l~------~~~g~~~~~~l~~~~~--~~~ii~~s~~~~~~~~ 89 (134)
T 3f6c_A 18 RNLLIKNDIEILAELTEGGSAVQRVETLKPDIVIIDVDIP------GVNGIQVLETLRKRQY--SGIIIIVSAKNDHFYG 89 (134)
T ss_dssp HHHHHHTTEEEEEEESSSTTHHHHHHHHCCSEEEEETTCS------SSCHHHHHHHHHHTTC--CSEEEEEECC---CTH
T ss_pred HHHHhhCCcEEEEEcCCHHHHHHHHHhcCCCEEEEecCCC------CCChHHHHHHHHhcCC--CCeEEEEeCCCChHHH
Confidence 344566777776567776666554 456799999853311 1234677888877543 6899988888788889
Q ss_pred HHHHHcCcceeeeccccccCccCCCCHHHHHHHhc
Q 020013 182 VAALSLGAQGICLGTRFVASEESYAHPEYKRKLVE 216 (332)
Q Consensus 182 ~~al~~GA~gV~~GT~fl~t~Es~~~~~~k~~~~~ 216 (332)
.+++..|++++..=. -..+...+++..
T Consensus 90 ~~~~~~g~~~~l~kp--------~~~~~l~~~i~~ 116 (134)
T 3f6c_A 90 KHCADAGANGFVSKK--------EGMNNIIAAIEA 116 (134)
T ss_dssp HHHHHTTCSEEEEGG--------GCTHHHHHHHHH
T ss_pred HHHHHhCCCEEEeCC--------CCHHHHHHHHHH
Confidence 999999999876421 123556666654
|
| >1mzh_A Deoxyribose-phosphate aldolase; alpha-beta barrel, structural genomics, PSI, protein structure initiative; 2.00A {Aquifex aeolicus} SCOP: c.1.10.1 | Back alignment and structure |
|---|
Probab=92.32 E-value=1.2 Score=38.27 Aligned_cols=87 Identities=18% Similarity=0.226 Sum_probs=59.7
Q ss_pred CHHHHHHHHHHHHhhcCCcEEEEeecCCC---C---HHHHHHHHhcCCcEEEEccCC----CcHHHHHHHHhC---CCEE
Q 020013 47 APDYLRDLIRKTRSLTERPFGVGVVLAFP---H---NENIKAILSEKVAVLQVSWGE----YSEELVLEAHSA---GVKV 113 (332)
Q Consensus 47 ~~e~~~~~i~~~r~~~~~p~gvnl~~~~~---~---~~~~~~~~~~~~~~I~~~~g~----~~~~~i~~~~~~---g~~v 113 (332)
..+.+.+.++++++... |+.+.+++..+ . .+..+.+.+.|+|+|.++.|. ...+.++.+++. .++|
T Consensus 100 ~~~~~~~~i~~v~~a~~-pv~vKvi~e~~~l~~~~~~~~a~~a~eaGad~I~tstg~~~gga~~~~i~~v~~~v~~~ipV 178 (225)
T 1mzh_A 100 KYDFVVEELKEIFRETP-SAVHKVIVETPYLNEEEIKKAVEICIEAGADFIKTSTGFAPRGTTLEEVRLIKSSAKGRIKV 178 (225)
T ss_dssp CHHHHHHHHHHHHHTCT-TSEEEEECCGGGCCHHHHHHHHHHHHHHTCSEEECCCSCSSSCCCHHHHHHHHHHHTTSSEE
T ss_pred ChHHHHHHHHHHHHHhc-CceEEEEEeCCCCCHHHHHHHHHHHHHhCCCEEEECCCCCCCCCCHHHHHHHHHHhCCCCcE
Confidence 45666777888887766 77777754322 1 233566778899999876432 244566666653 5777
Q ss_pred EE--ecCCHHHHHHHHHcCCCEE
Q 020013 114 VP--QVGSFDEARKAVNAGVDAI 134 (332)
Q Consensus 114 ~~--~v~s~~~a~~a~~~g~D~i 134 (332)
+. .+.|.+++.+.+++|+|.|
T Consensus 179 ia~GGI~t~~da~~~l~aGA~~i 201 (225)
T 1mzh_A 179 KASGGIRDLETAISMIEAGADRI 201 (225)
T ss_dssp EEESSCCSHHHHHHHHHTTCSEE
T ss_pred EEECCCCCHHHHHHHHHhCchHH
Confidence 64 4779999999999999965
|
| >3oix_A Putative dihydroorotate dehydrogenase; dihydrooro oxidase; TIM barrel, oxidoreductase; HET: MLY FMN; 2.40A {Streptococcus mutans} | Back alignment and structure |
|---|
Probab=92.31 E-value=0.61 Score=43.04 Aligned_cols=90 Identities=11% Similarity=0.127 Sum_probs=62.2
Q ss_pred CHHHHHHHHHHHHhhcCCcEEEEeecCCCCHHHHHHHHhcCCc---EEE----------Ecc---------------CCC
Q 020013 47 APDYLRDLIRKTRSLTERPFGVGVVLAFPHNENIKAILSEKVA---VLQ----------VSW---------------GEY 98 (332)
Q Consensus 47 ~~e~~~~~i~~~r~~~~~p~gvnl~~~~~~~~~~~~~~~~~~~---~I~----------~~~---------------g~~ 98 (332)
+++.+.++++.+++.+++|+.|.+-.+....+..+.+.+.+++ +|. ++. |.+
T Consensus 177 ~~e~l~~il~av~~~~~~PV~vKi~p~~~~~~~a~~~~~aga~~i~~int~nt~g~~~~i~~~~~~~~~~~~~gGlSG~a 256 (345)
T 3oix_A 177 DFETTDQILSEVFTYFTKPLGIKLPPYFDIVHFDQAAAIFNXYPLTFVNCINSIGNGLVIEDETVVIXPKNGFGGIGGDY 256 (345)
T ss_dssp CHHHHHHHHHHHTTTCCSCEEEEECCCCCHHHHHHHHHHHTTSCCSEEEECCCEEEEECEETTEESCSGGGGEEEEEEGG
T ss_pred CHHHHHHHHHHHHHHhCCCeEEEECCCCCHHHHHHHHHHhCCCceEEEEeecccccceeeccCccccccccccCCcCCcc
Confidence 6788999999999988999999887654334445555555544 332 110 111
Q ss_pred c----HHHHHHHHhC---CCEEEE--ecCCHHHHHHHHHcCCCEEEE
Q 020013 99 S----EELVLEAHSA---GVKVVP--QVGSFDEARKAVNAGVDAIIV 136 (332)
Q Consensus 99 ~----~~~i~~~~~~---g~~v~~--~v~s~~~a~~a~~~g~D~ivv 136 (332)
. .+++.++++. .++|+. .+.|.+++.+.+.+|+|.|-+
T Consensus 257 i~p~a~~~v~~i~~~~~~~ipIIg~GGI~s~~da~~~l~aGAd~V~i 303 (345)
T 3oix_A 257 VKPTALANVHAFYKRLNPSIQIIGTGGVXTGRDAFEHILCGASMVQI 303 (345)
T ss_dssp GHHHHHHHHHHHHTTSCTTSEEEEESSCCSHHHHHHHHHHTCSEEEE
T ss_pred ccHHHHHHHHHHHHHcCCCCcEEEECCCCChHHHHHHHHhCCCEEEE
Confidence 1 2456677664 478875 478999999999999999987
|
| >1gox_A (S)-2-hydroxy-acid oxidase, peroxisomal; oxidoreductase (oxygen(A)); HET: FMN; 2.00A {Spinacia oleracea} SCOP: c.1.4.1 PDB: 1gyl_A* 1al8_A* 1al7_A* 2cdh_0 | Back alignment and structure |
|---|
Probab=92.31 E-value=0.83 Score=42.51 Aligned_cols=81 Identities=19% Similarity=0.141 Sum_probs=58.9
Q ss_pred HHHHHHHhhcCCcEEEEeecCCCCHHHHHHHHhcCCcEEEEc--cCC------CcHHHHHHHHh-C--CCEEEE--ecCC
Q 020013 53 DLIRKTRSLTERPFGVGVVLAFPHNENIKAILSEKVAVLQVS--WGE------YSEELVLEAHS-A--GVKVVP--QVGS 119 (332)
Q Consensus 53 ~~i~~~r~~~~~p~gvnl~~~~~~~~~~~~~~~~~~~~I~~~--~g~------~~~~~i~~~~~-~--g~~v~~--~v~s 119 (332)
+.++++++.++.|+.+.... ..+.++.+.+.|+|+|.++ .|. +..+.+..+++ . .++|+. .+.+
T Consensus 215 ~~i~~l~~~~~~pv~vK~~~---~~e~a~~a~~~Gad~I~vs~~ggr~~~~~~~~~~~l~~v~~~~~~~ipvia~GGI~~ 291 (370)
T 1gox_A 215 KDVAWLQTITSLPILVKGVI---TAEDARLAVQHGAAGIIVSNHGARQLDYVPATIMALEEVVKAAQGRIPVFLDGGVRR 291 (370)
T ss_dssp HHHHHHHHHCCSCEEEECCC---SHHHHHHHHHTTCSEEEECCGGGTSSTTCCCHHHHHHHHHHHTTTSSCEEEESSCCS
T ss_pred HHHHHHHHHhCCCEEEEecC---CHHHHHHHHHcCCCEEEECCCCCccCCCcccHHHHHHHHHHHhCCCCEEEEECCCCC
Confidence 45777777778898885543 2567788899999999983 221 22344555544 2 577875 4789
Q ss_pred HHHHHHHHHcCCCEEEE
Q 020013 120 FDEARKAVNAGVDAIIV 136 (332)
Q Consensus 120 ~~~a~~a~~~g~D~ivv 136 (332)
.+++.+++..|+|+|.+
T Consensus 292 ~~D~~k~l~~GAdaV~i 308 (370)
T 1gox_A 292 GTDVFKALALGAAGVFI 308 (370)
T ss_dssp HHHHHHHHHHTCSEEEE
T ss_pred HHHHHHHHHcCCCEEee
Confidence 99999999999999988
|
| >1dxe_A 2-dehydro-3-deoxy-galactarate aldolase; class II aldolase; 1.8A {Escherichia coli} SCOP: c.1.12.5 PDB: 1dxf_A | Back alignment and structure |
|---|
Probab=92.29 E-value=5.4 Score=34.85 Aligned_cols=183 Identities=16% Similarity=0.094 Sum_probs=102.9
Q ss_pred hhcCCccceecCCCCCCCCcHHHHHHHHhCCCceeec--CCC-CCCHHHHHHHHHHHHhhcCCcEEEEeecCCCCHHHHH
Q 020013 5 GMLGFEYGIVQAPLGPDISGPELVAAVANAGGLGLLR--APD-WEAPDYLRDLIRKTRSLTERPFGVGVVLAFPHNENIK 81 (332)
Q Consensus 5 ~~l~~~~Pii~apM~~g~s~~~la~avs~aGglG~i~--~~~-~~~~e~~~~~i~~~r~~~~~p~gvnl~~~~~~~~~~~ 81 (332)
+.|.-..|.+..-+ .+++|+.+..+..+|. .++. ... ....+..+..+..++. .+.+..|-+ +..+...++
T Consensus 12 ~~l~~g~~~~~~~l--~v~~p~~~e~a~~~ga-D~v~lDlEd~p~~~~~a~~~~~~~~~-~~~~~~VRv--~~~~~~~i~ 85 (256)
T 1dxe_A 12 AALAAKQVQIGCWS--ALSNPISTEVLGLAGF-DWLVLDGEHAPNDISTFIPQLMALKG-SASAPVVRV--PTNEPVIIK 85 (256)
T ss_dssp HHHHTTCCEEEEEE--CSCSHHHHHHHTTSCC-SEEEEESSSSSCCHHHHHHHHHHTTT-CSSEEEEEC--SSSCHHHHH
T ss_pred HHHHCCCCeEEEEE--eCCCHHHHHHHHhCCC-CEEEEcCCCCCCCHHHHHHHHHHHHh-CCCcEEEEC--CCCCHHHHH
Confidence 33333345553322 3678998887777764 3332 221 1234555655555432 334444433 333456688
Q ss_pred HHHhcCCcEEEEccCCCcHHHHHHHH--------------------------------hCCCEEEEecCCHHHHHHHH--
Q 020013 82 AILSEKVAVLQVSWGEYSEELVLEAH--------------------------------SAGVKVVPQVGSFDEARKAV-- 127 (332)
Q Consensus 82 ~~~~~~~~~I~~~~g~~~~~~i~~~~--------------------------------~~g~~v~~~v~s~~~a~~a~-- 127 (332)
.+++.+++.|.++.=..+.+ ++.+. ...++++..+-+++-+..+.
T Consensus 86 ~~l~~g~~gI~~P~V~s~~e-v~~~~~~~~~~p~g~Rg~~~~~~~~~~g~~~~~~~~~~~~~~v~~~IEt~~av~~~~eI 164 (256)
T 1dxe_A 86 RLLDIGFYNFLIPFVETKEE-AELAVASTRYPPEGIRGVSVSHRANMFGTVADYFAQSNKNITILVQIESQQGVDNVDAI 164 (256)
T ss_dssp HHHHTTCCEEEESCCCSHHH-HHHHHHTTSCTTTCCCCCCSSSGGGGGGTSTTHHHHHTTSCEEEEEECSHHHHHTHHHH
T ss_pred HHHhcCCceeeecCcCCHHH-HHHHHHHhcCCCCCccCCCcchhhhhcCchHHHHHhcCcccEEEEEECCHHHHHhHHHH
Confidence 88999999998875332333 22221 12477888888877554432
Q ss_pred -H-cCCCEEEEecC----CCCcccCCC--CchhhhHHHHHHHhCCCCCcEEeecCcCCHHHHHHHHHcCcceeeeccc
Q 020013 128 -N-AGVDAIIVQGR----EAGGHVIGQ--DGLISLLPMVVDLIGDRDIPIIAAGGIVDARGYVAALSLGAQGICLGTR 197 (332)
Q Consensus 128 -~-~g~D~ivv~G~----eaGGh~~~~--~~~~~ll~~i~~~~~~~~iPviaaGGI~~~~~v~~al~~GA~gV~~GT~ 197 (332)
. .++|++.+-.. +. |+.+.. ......+.++..+....++|+.... .+++.+..++.+|.+.+.+|+-
T Consensus 165 a~~~~vd~l~iG~~DL~~~l-g~~~~~~~p~v~~a~~~iv~aa~a~G~~~~v~~--~d~~~~~~~~~~G~~~~s~~~d 239 (256)
T 1dxe_A 165 AATEGVDGIFVGPSDLAAAL-GHLGNASHPDVQKAIQHIFNRASAHGKPSGILA--PVEADARRYLEWGATFVAVGSD 239 (256)
T ss_dssp HTSTTCCEEEECHHHHHHHT-TCTTCTTSHHHHHHHHHHHHHHHHTTCCEEEEC--CSHHHHHHHHHTTCCEEEEEEH
T ss_pred hCCCCCCEEEEChHHHHHHh-CCCCCCCCHHHHHHHHHHHHHHHHhCCceEEec--CCHHHHHHHHHcCCCEEEechH
Confidence 2 38999988221 11 222111 1234445555444322256664433 3889999999999999999875
|
| >2hjp_A Phosphonopyruvate hydrolase; phosporus-Ca cleavage, PEP mutase/isocitrate lyase superfamily; HET: XYS PPR; 1.90A {Variovorax SP} PDB: 2dua_A* 2hrw_A | Back alignment and structure |
|---|
Probab=92.27 E-value=1.2 Score=40.10 Aligned_cols=89 Identities=19% Similarity=0.133 Sum_probs=58.3
Q ss_pred HHHHHh-CCCEEEEecCCHHHHHHHHHcCCCEEEEecCCC---CcccCCC-Cch---hhhHHHHHHHhCCCCCcEEeec-
Q 020013 103 VLEAHS-AGVKVVPQVGSFDEARKAVNAGVDAIIVQGREA---GGHVIGQ-DGL---ISLLPMVVDLIGDRDIPIIAAG- 173 (332)
Q Consensus 103 i~~~~~-~g~~v~~~v~s~~~a~~a~~~g~D~ivv~G~ea---GGh~~~~-~~~---~~ll~~i~~~~~~~~iPviaaG- 173 (332)
++.+++ ....+++.+.+.-.|+.+.++|.|+|.+.|... =|+.+.. .+. ...+..|.+.. ++||++..
T Consensus 7 lr~l~~~~~~i~~~~a~D~~sA~~~~~aG~~ai~vs~~~~a~~~G~pD~~~vt~~em~~~~~~I~~~~---~~PviaD~d 83 (290)
T 2hjp_A 7 LRAALDSGRLFTAMAAHNPLVAKLAEQAGFGGIWGSGFELSASYAVPDANILSMSTHLEMMRAIASTV---SIPLIADID 83 (290)
T ss_dssp HHHHHHHCCCEEEEECSSHHHHHHHHHHTCSEEEECHHHHHHHTTSCTTTCSCHHHHHHHHHHHHTTC---SSCEEEECT
T ss_pred HHHHHhCCCcEEEecCCCHHHHHHHHHcCCCEEEEChHHHHHhCCCCCCCCCCHHHHHHHHHHHHhcC---CCCEEEECC
Confidence 344444 457778899999999999999999999976311 2444322 222 22333444433 79999864
Q ss_pred -CcCCHH----HHHHHHHcCcceeee
Q 020013 174 -GIVDAR----GYVAALSLGAQGICL 194 (332)
Q Consensus 174 -GI~~~~----~v~~al~~GA~gV~~ 194 (332)
|-+++. ++..++++||+||.+
T Consensus 84 ~Gyg~~~~~~~~v~~l~~aGa~gv~i 109 (290)
T 2hjp_A 84 TGFGNAVNVHYVVPQYEAAGASAIVM 109 (290)
T ss_dssp TTTSSHHHHHHHHHHHHHHTCSEEEE
T ss_pred CCCCCHHHHHHHHHHHHHhCCeEEEE
Confidence 333554 455677799999988
|
| >3th6_A Triosephosphate isomerase; alpha/beta barrel, embryogenesis, glycolysis; 2.40A {Rhipicephalus microplus} | Back alignment and structure |
|---|
Probab=92.26 E-value=1.5 Score=38.53 Aligned_cols=117 Identities=15% Similarity=0.204 Sum_probs=69.8
Q ss_pred HHHHHHhcCCcEEEEc-------cCCCcHHHH----HHHHhCCCEEEEecCC-HHH-------------HHHHHHcCC--
Q 020013 79 NIKAILSEKVAVLQVS-------WGEYSEELV----LEAHSAGVKVVPQVGS-FDE-------------ARKAVNAGV-- 131 (332)
Q Consensus 79 ~~~~~~~~~~~~I~~~-------~g~~~~~~i----~~~~~~g~~v~~~v~s-~~~-------------a~~a~~~g~-- 131 (332)
..+.+.+.|++++.++ |+. ..+.+ +.+.+.|+.++..++. .++ .+... .+.
T Consensus 79 S~~mL~d~G~~~ViiGHSERR~~f~E-td~~v~~Kv~~Al~~GL~pI~CvGEtleere~g~t~~vv~~Ql~~~l-~~~~~ 156 (249)
T 3th6_A 79 SPGMIKDCGGQWVILGHSERRHVFKE-DDVLIGEKIKHALESGLNVIACIGELLEDREAGRTEEVCFRQIKHIA-SNVKD 156 (249)
T ss_dssp CHHHHHHTTCCEEEESCHHHHHTSCC-CHHHHHHHHHHHHHTTCEEEEEECCCHHHHTTTCHHHHHHHHHHHHH-TTCSC
T ss_pred CHHHHHHcCCCEEEECchhhccccCC-CHHHHHHHHHHHHHCCCEEEEEcCCcHHHHhcCCHHHHHHHHHHHHH-hchhh
Confidence 4667888999999985 454 34443 5566789998888873 221 11122 222
Q ss_pred --CEEEE-ecCCCCcccCCCCch-------hhhHHHHHH-HhCC---CCCcEEeecCcCCHHHHHHHHH-cCcceeeecc
Q 020013 132 --DAIIV-QGREAGGHVIGQDGL-------ISLLPMVVD-LIGD---RDIPIIAAGGIVDARGYVAALS-LGAQGICLGT 196 (332)
Q Consensus 132 --D~ivv-~G~eaGGh~~~~~~~-------~~ll~~i~~-~~~~---~~iPviaaGGI~~~~~v~~al~-~GA~gV~~GT 196 (332)
..+++ +..-+-|. |...+ ...|+.... .+.. .+++|+..|+| +++|+.+.+. .+.||+.+|+
T Consensus 157 ~~~~vIAYEPvWAIGT--G~~At~e~aqevh~~IR~~l~~~~~~~~a~~vrIlYGGSV-~~~N~~~l~~~~diDG~LVGg 233 (249)
T 3th6_A 157 WSKVVIAYEPVWAIGT--GKTATPDQAQEVHSKVRNWLSTNVSADVASKVRIQYGGSV-NAGNCKELGRKPDIDGFLVGG 233 (249)
T ss_dssp GGGEEEEECCTTTCCC-----CCHHHHHHHHHHHHHHHHHHTCHHHHHHCCEEECSCC-CTTTHHHHHTSTTCCEEEECG
T ss_pred hcCEEEEECCcchhcC--CCCCCHHHHHHHHHHHHHHHHHhhChhhcccccEEEcCcc-CHhHHHHHhcCCCCCEEEeeh
Confidence 23443 55455443 22111 222332211 1100 14899999999 7899988875 6899999999
Q ss_pred cccc
Q 020013 197 RFVA 200 (332)
Q Consensus 197 ~fl~ 200 (332)
+-|.
T Consensus 234 ASL~ 237 (249)
T 3th6_A 234 ASLK 237 (249)
T ss_dssp GGGS
T ss_pred Hhhh
Confidence 8764
|
| >3si9_A DHDPS, dihydrodipicolinate synthase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, TIM barrel; 2.10A {Bartonella henselae} | Back alignment and structure |
|---|
Probab=92.22 E-value=0.4 Score=43.71 Aligned_cols=121 Identities=10% Similarity=0.168 Sum_probs=65.7
Q ss_pred HHHHHHcCCCEEEEecCCCCcccCCCCchhhhHHHHHHHhCCCCCcEEeecCcCCHHHHH----HHHHcCcceeeecccc
Q 020013 123 ARKAVNAGVDAIIVQGREAGGHVIGQDGLISLLPMVVDLIGDRDIPIIAAGGIVDARGYV----AALSLGAQGICLGTRF 198 (332)
Q Consensus 123 a~~a~~~g~D~ivv~G~eaGGh~~~~~~~~~ll~~i~~~~~~~~iPviaaGGI~~~~~v~----~al~~GA~gV~~GT~f 198 (332)
++...+.|+|+|++-|..+-+.......-..++..+++...+ ++|||+.=|=.+-++.. .+-.+|||++++-+.+
T Consensus 49 i~~li~~Gv~Gl~v~GtTGE~~~Ls~~Er~~v~~~~v~~~~g-rvpViaGvg~~st~~ai~la~~A~~~Gadavlv~~P~ 127 (315)
T 3si9_A 49 VEWQITQGINGVSPVGTTGESPTLTHEEHKRIIELCVEQVAK-RVPVVAGAGSNSTSEAVELAKHAEKAGADAVLVVTPY 127 (315)
T ss_dssp HHHHHHTTCSEEECSSTTTTGGGSCHHHHHHHHHHHHHHHTT-SSCBEEECCCSSHHHHHHHHHHHHHTTCSEEEEECCC
T ss_pred HHHHHHcCCCEEEeCccccCccccCHHHHHHHHHHHHHHhCC-CCcEEEeCCCCCHHHHHHHHHHHHhcCCCEEEECCCC
Confidence 445668899999997664433321112234566666666643 68988754433444433 3446899999999988
Q ss_pred ccCc-cCCCCHHHHHHHhcCCCceEEEEecccCCCCCCceeecChHHHhhhc
Q 020013 199 VASE-ESYAHPEYKRKLVEMDKTEYTDVFGRARWPGAPHRVLQTPFFSNWKN 249 (332)
Q Consensus 199 l~t~-Es~~~~~~k~~~~~~~~t~~t~~~~~~~~~g~~~R~l~n~~~~~~~~ 249 (332)
.... +...-+ |=+.|.++.+.- ..+++ .|++.+.-+....+.++.+
T Consensus 128 y~~~~~~~l~~-~f~~va~a~~lP-iilYn---~P~~tg~~l~~~~~~~La~ 174 (315)
T 3si9_A 128 YNRPNQRGLYT-HFSSIAKAISIP-IIIYN---IPSRSVIDMAVETMRDLCR 174 (315)
T ss_dssp SSCCCHHHHHH-HHHHHHHHCSSC-EEEEE---CHHHHSCCCCHHHHHHHHH
T ss_pred CCCCCHHHHHH-HHHHHHHcCCCC-EEEEe---CchhhCCCCCHHHHHHHHh
Confidence 7542 111112 223344444433 23443 1343344455555555443
|
| >1vhn_A Putative flavin oxidoreducatase; structural genomics, unknown function; HET: FMN; 1.59A {Thermotoga maritima} SCOP: c.1.4.1 | Back alignment and structure |
|---|
Probab=92.14 E-value=0.41 Score=43.55 Aligned_cols=89 Identities=16% Similarity=0.232 Sum_probs=64.6
Q ss_pred CHHHHHHHHHHHHhhcCCcEEEEeecCC--CC-HHHHHHHHhcCCcEEEEccCC--------CcHHHHHHHHhCCCEEEE
Q 020013 47 APDYLRDLIRKTRSLTERPFGVGVVLAF--PH-NENIKAILSEKVAVLQVSWGE--------YSEELVLEAHSAGVKVVP 115 (332)
Q Consensus 47 ~~e~~~~~i~~~r~~~~~p~gvnl~~~~--~~-~~~~~~~~~~~~~~I~~~~g~--------~~~~~i~~~~~~g~~v~~ 115 (332)
.++.+.+.++.+++..+.|+.+.+-... .+ .+.++.+.+.|++.|.+|.+. ..-++++.+++ +++|+.
T Consensus 110 ~~~~~~eiv~~v~~~~~~pv~vKir~G~~~~~~~~~a~~l~~~G~d~i~v~g~~~~~~~~~~~~~~~i~~i~~-~ipVi~ 188 (318)
T 1vhn_A 110 DLRHFRYIVRELRKSVSGKFSVKTRLGWEKNEVEEIYRILVEEGVDEVFIHTRTVVQSFTGRAEWKALSVLEK-RIPTFV 188 (318)
T ss_dssp CHHHHHHHHHHHHHHCSSEEEEEEESCSSSCCHHHHHHHHHHTTCCEEEEESSCTTTTTSSCCCGGGGGGSCC-SSCEEE
T ss_pred CHHHHHHHHHHHHHhhCCCEEEEecCCCChHHHHHHHHHHHHhCCCEEEEcCCCccccCCCCcCHHHHHHHHc-CCeEEE
Confidence 5777888899999887788888764311 11 256777888999999997321 11134555556 788875
Q ss_pred e--cCCHHHHHHHHH-cCCCEEEE
Q 020013 116 Q--VGSFDEARKAVN-AGVDAIIV 136 (332)
Q Consensus 116 ~--v~s~~~a~~a~~-~g~D~ivv 136 (332)
. +.|.+++.++++ .|+|+|.+
T Consensus 189 ~GgI~s~~da~~~l~~~gad~V~i 212 (318)
T 1vhn_A 189 SGDIFTPEDAKRALEESGCDGLLV 212 (318)
T ss_dssp ESSCCSHHHHHHHHHHHCCSEEEE
T ss_pred ECCcCCHHHHHHHHHcCCCCEEEE
Confidence 4 779999999988 69999988
|
| >1ney_A TIM, triosephosphate isomerase; yeast, DHAP, dihydroxyacetone phosphate, michaelis complex; HET: FTR 13P; 1.20A {Saccharomyces cerevisiae} SCOP: c.1.1.1 PDB: 1nf0_A* 1i45_A* 1ypi_A 2ypi_A 7tim_A* 3ypi_A* | Back alignment and structure |
|---|
Probab=92.14 E-value=0.67 Score=40.64 Aligned_cols=118 Identities=14% Similarity=0.210 Sum_probs=70.1
Q ss_pred HHHHHHhcCCcEEEEc-------cCCCcHH----HHHHHHhCCCEEEEecCCHHHHH--------------HHHH---cC
Q 020013 79 NIKAILSEKVAVLQVS-------WGEYSEE----LVLEAHSAGVKVVPQVGSFDEAR--------------KAVN---AG 130 (332)
Q Consensus 79 ~~~~~~~~~~~~I~~~-------~g~~~~~----~i~~~~~~g~~v~~~v~s~~~a~--------------~a~~---~g 130 (332)
....+.+.|++++.++ |+. ..+ -++.+.+.|+.++..++...+.+ .+++ .-
T Consensus 78 S~~mL~d~G~~~ViiGHSERR~~f~E-td~~v~~Kv~~Al~~GL~pI~CvGEtleere~g~t~~vv~~Ql~~~l~~~~~~ 156 (247)
T 1ney_A 78 SVDQIKDVGAKYVILGHSERRSYFHE-DDKFIADKTKFALGQGVGVILCIGETLEEKKAGKTLDVVERQLNAVLEEVKDF 156 (247)
T ss_dssp CHHHHHHTTCCEEEESCHHHHHTTCC-CHHHHHHHHHHHHHTTCEEEEEECCCHHHHHTTCHHHHHHHHHHHHHHHCCCC
T ss_pred CHHHHHHcCCCEEEECChhhccccCC-CHHHHHHHHHHHHHCCCEEEEEcCCcHHHHHCCCHHHHHHHHHHHHHhchhhh
Confidence 4567888999999985 454 333 23445678999888887332211 1222 11
Q ss_pred CCEEEE-ecCCCCcccCCCCch-------hhhHHHHHHH-hC---CCCCcEEeecCcCCHHHHHHHHH-cCcceeeeccc
Q 020013 131 VDAIIV-QGREAGGHVIGQDGL-------ISLLPMVVDL-IG---DRDIPIIAAGGIVDARGYVAALS-LGAQGICLGTR 197 (332)
Q Consensus 131 ~D~ivv-~G~eaGGh~~~~~~~-------~~ll~~i~~~-~~---~~~iPviaaGGI~~~~~v~~al~-~GA~gV~~GT~ 197 (332)
...|++ +..-+-|. |...+ ...+++.... +. ..+++|+..|+| +++|+.+.+. .+.||+.+|++
T Consensus 157 ~~~vIAYEPvWAIGT--G~~Atpe~a~evh~~IR~~l~~~~~~~va~~vrIlYGGSV-~~~N~~~l~~~~diDG~LVGgA 233 (247)
T 1ney_A 157 TNVVVAYEPVXAIGT--GLAATPEDAQDIHASIRKFLASKLGDKAASELRILYGGSA-NGSNAVTFKDKADVDGFLVGGA 233 (247)
T ss_dssp TTEEEEECCGGGTTT--SCCCCHHHHHHHHHHHHHHHHHHHCHHHHHHCCEEEESSC-CTTTGGGGTTCTTCCEEEESGG
T ss_pred cCEEEEECChhhcCC--CCCCCHHHHHHHHHHHHHHHHHhcChhhcccceEEEcCCc-CHhHHHHHHcCCCCCeeEeehH
Confidence 234444 44444443 22222 2223321111 10 014899999999 7899888775 68999999999
Q ss_pred ccc
Q 020013 198 FVA 200 (332)
Q Consensus 198 fl~ 200 (332)
-+.
T Consensus 234 sL~ 236 (247)
T 1ney_A 234 SLK 236 (247)
T ss_dssp GGS
T ss_pred HHH
Confidence 775
|
| >3krs_A Triosephosphate isomerase; ssgcid, SBRI, emerald biostructures, university of washingto niaid, I structural genomics; 1.55A {Cryptosporidium parvum iowa II} | Back alignment and structure |
|---|
Probab=92.08 E-value=0.74 Score=40.88 Aligned_cols=118 Identities=17% Similarity=0.253 Sum_probs=70.3
Q ss_pred HHHHHHhcCCcEEEEc-------cCCCcHHH----HHHHHhCCCEEEEecCC-HHHHH------------HHHHcCC---
Q 020013 79 NIKAILSEKVAVLQVS-------WGEYSEEL----VLEAHSAGVKVVPQVGS-FDEAR------------KAVNAGV--- 131 (332)
Q Consensus 79 ~~~~~~~~~~~~I~~~-------~g~~~~~~----i~~~~~~g~~v~~~v~s-~~~a~------------~a~~~g~--- 131 (332)
..+.+.+.|+++|.++ |+. ..+. ++.+.+.|+.++..++. .++-. .+.-.+.
T Consensus 102 S~~mLkd~G~~~ViiGHSERR~~f~E-tde~v~~Kv~~Al~~GL~pIlCVGEtleere~g~t~~vv~~Ql~~~l~~v~~~ 180 (271)
T 3krs_A 102 SCEMLKDMDVDCSLVGHSERRQYYSE-TDQIVNNKVKKGLENGLKIVLCIGESLSERETGKTNDVIQKQLTEALKDVSDL 180 (271)
T ss_dssp CHHHHHHTTCCEEEESCHHHHHHSCC-CHHHHHHHHHHHHHTTCEEEEEECCCHHHHHTTCHHHHHHHHHHHHTTTCCCC
T ss_pred cHHHHHHcCCCEEEECchhhccccCC-CHHHHHHHHHHHHHCCCeEEEEeCCcHHHHHCCCHHHHHHHHHHHHHhchHhh
Confidence 4567888999999985 454 3444 44566789998888873 33210 1111121
Q ss_pred -CEEEE-ecCCCCcccCCCCch-------hhhHHHHHHH-hC---CCCCcEEeecCcCCHHHHHHHHH-cCcceeeeccc
Q 020013 132 -DAIIV-QGREAGGHVIGQDGL-------ISLLPMVVDL-IG---DRDIPIIAAGGIVDARGYVAALS-LGAQGICLGTR 197 (332)
Q Consensus 132 -D~ivv-~G~eaGGh~~~~~~~-------~~ll~~i~~~-~~---~~~iPviaaGGI~~~~~v~~al~-~GA~gV~~GT~ 197 (332)
..||+ +..-+=|. |...+ ...|++.... +. ..+++|+..|+| +++|+.+.+. .+.||+.+|++
T Consensus 181 ~~~vIAYEPvWAIGT--G~tAtpe~aqevh~~IR~~l~~~~~~~~a~~vrILYGGSV-~~~N~~el~~~~diDG~LVGgA 257 (271)
T 3krs_A 181 SNLVIAYEPIWAIGT--GVVATPGQAQEAHAFIREYVTRMYNPQVSSNLRIIYGGSV-TPDNCNELIKCADIDGFLVGGA 257 (271)
T ss_dssp TTEEEEECCGGGSSS--SCCCCHHHHHHHHHHHHHHHHHHSCHHHHHHCCEEECSCC-CTTTHHHHHHSTTCCEEEESGG
T ss_pred cCEEEEECChhhhcC--CCCCCHHHHHHHHHHHHHHHHHhcChhhcCCccEEEcCCc-CHHHHHHHhcCCCCCEEEeeHH
Confidence 24444 44444342 22121 2233332211 10 015899999999 8899998886 68999999998
Q ss_pred ccc
Q 020013 198 FVA 200 (332)
Q Consensus 198 fl~ 200 (332)
-|.
T Consensus 258 SL~ 260 (271)
T 3krs_A 258 SLK 260 (271)
T ss_dssp GGS
T ss_pred hhh
Confidence 775
|
| >2nv1_A Pyridoxal biosynthesis lyase PDXS; (beta/alpha)8-barrel, synthase; 2.08A {Bacillus subtilis} PDB: 2nv2_A* 1znn_A | Back alignment and structure |
|---|
Probab=92.03 E-value=0.76 Score=41.46 Aligned_cols=79 Identities=22% Similarity=0.243 Sum_probs=53.0
Q ss_pred EEEecCCHHHHHHHHHcCCCEE-EEe-----cCCCCcccCCCCchhhhHHHHHHHhCCCCCcEEeecCcCC--HHHHHHH
Q 020013 113 VVPQVGSFDEARKAVNAGVDAI-IVQ-----GREAGGHVIGQDGLISLLPMVVDLIGDRDIPIIAAGGIVD--ARGYVAA 184 (332)
Q Consensus 113 v~~~v~s~~~a~~a~~~g~D~i-vv~-----G~eaGGh~~~~~~~~~ll~~i~~~~~~~~iPviaaGGI~~--~~~v~~a 184 (332)
++..+...+.++.+.+.|+|+| ++. -...+|- ........+.++++.+ ++|++. ++.. .+.+..+
T Consensus 24 ~i~~~~~~~~a~~~~~~Ga~~I~~l~p~~~~~~~~~G~--~~~~~~~~i~~I~~~~---~iPv~~--k~r~g~~~~~~~~ 96 (305)
T 2nv1_A 24 VIMDVINAEQAKIAEEAGAVAVMALERVPADIRAAGGV--ARMADPTIVEEVMNAV---SIPVMA--KARIGHIVEARVL 96 (305)
T ss_dssp EEEEESSHHHHHHHHHTTCSEEEECCC-------CCCC--CCCCCHHHHHHHHHHC---SSCEEE--EECTTCHHHHHHH
T ss_pred eeecCCHHHHHHHHHHcCCCEEEEcCCCcchhhhccCc--ccCCCHHHHHHHHHhC---CCCEEe--cccccchHHHHHH
Confidence 3347788899999999999999 442 1111221 1223466777887766 799984 4433 6777888
Q ss_pred HHcCcceeeeccccc
Q 020013 185 LSLGAQGICLGTRFV 199 (332)
Q Consensus 185 l~~GA~gV~~GT~fl 199 (332)
+++|||+|. ++..+
T Consensus 97 ~a~GAd~V~-~~~~l 110 (305)
T 2nv1_A 97 EAMGVDYID-ESEVL 110 (305)
T ss_dssp HHHTCSEEE-ECTTS
T ss_pred HHCCCCEEE-EeccC
Confidence 889999997 66554
|
| >1o60_A 2-dehydro-3-deoxyphosphooctonate aldolase; structural genomics, transferase; 1.80A {Haemophilus influenzae} SCOP: c.1.10.4 PDB: 3e9a_A | Back alignment and structure |
|---|
Probab=92.00 E-value=3.3 Score=37.19 Aligned_cols=136 Identities=14% Similarity=0.104 Sum_probs=78.4
Q ss_pred HHHHHHhhcCCcEEEEeecCCCCHHHHHHHHhcCCcEEEEccCC-CcHHHHHHHHhCCCEEEEecC---CHHHHHHHH--
Q 020013 54 LIRKTRSLTERPFGVGVVLAFPHNENIKAILSEKVAVLQVSWGE-YSEELVLEAHSAGVKVVPQVG---SFDEARKAV-- 127 (332)
Q Consensus 54 ~i~~~r~~~~~p~gvnl~~~~~~~~~~~~~~~~~~~~I~~~~g~-~~~~~i~~~~~~g~~v~~~v~---s~~~a~~a~-- 127 (332)
++.++++..+.|+..-++ +...++.+.+ .++++.++... ...++++.+-+.+.+|+.+-+ ++++...+.
T Consensus 80 ~l~~~~~~~Glp~~te~~----d~~~~~~l~~-~vd~~kIgA~~~~n~~Ll~~~a~~~kPV~lk~G~~~t~~ei~~Av~~ 154 (292)
T 1o60_A 80 IFQELKDTFGVKIITDVH----EIYQCQPVAD-VVDIIQLPAFLARQTDLVEAMAKTGAVINVKKPQFLSPSQMGNIVEK 154 (292)
T ss_dssp HHHHHHHHHCCEEEEECC----SGGGHHHHHT-TCSEEEECGGGTTCHHHHHHHHHTTCEEEEECCTTSCGGGHHHHHHH
T ss_pred HHHHHHHHcCCcEEEecC----CHHHHHHHHh-cCCEEEECcccccCHHHHHHHHcCCCcEEEeCCCCCCHHHHHHHHHH
Confidence 344444445666665544 3456776666 69999997432 234577777778999987644 566655543
Q ss_pred --HcCC-CEEEEe-cCCCCcccCCCCchhhhHHHHHHHhCCCCCcEEe-----------ecCcCCH------HHHHHHHH
Q 020013 128 --NAGV-DAIIVQ-GREAGGHVIGQDGLISLLPMVVDLIGDRDIPIIA-----------AGGIVDA------RGYVAALS 186 (332)
Q Consensus 128 --~~g~-D~ivv~-G~eaGGh~~~~~~~~~ll~~i~~~~~~~~iPvia-----------aGGI~~~------~~v~~al~ 186 (332)
..|. +.+++. |... +.. .....+..++.+++... ++||+. .|+-+.+ .-..++.+
T Consensus 155 i~~~Gn~~i~L~~rg~~~-~y~-~~~~dl~~i~~lk~~~~--~~pV~~D~sH~~q~p~~~~~~~~g~~~~~~~ia~aAva 230 (292)
T 1o60_A 155 IEECGNDKIILCDRGTNF-GYD-NLIVDMLGFSVMKKASK--GSPVIFDVTHSLQCRDPFGAASSGRRAQVTELARSGLA 230 (292)
T ss_dssp HHHTTCCCEEEEECCEEC-STT-CEECCTTHHHHHHHHTT--SCCEEEEHHHHCC------------CTTHHHHHHHHHH
T ss_pred HHHcCCCeEEEEECCCCC-CCC-ccccCHHHHHHHHhhCC--CCCEEEECCCcccccCccccCCCCChhHHHHHHHHHHH
Confidence 4575 666664 3211 111 11134666777776542 589998 2333223 23346778
Q ss_pred cCcceeeecccc
Q 020013 187 LGAQGICLGTRF 198 (332)
Q Consensus 187 ~GA~gV~~GT~f 198 (332)
+||+|+++=+-|
T Consensus 231 ~Ga~Gl~IE~H~ 242 (292)
T 1o60_A 231 VGIAGLFLEAHP 242 (292)
T ss_dssp HCCSEEEEEEES
T ss_pred cCCCEEEEEecC
Confidence 999999986554
|
| >3hdv_A Response regulator; PSI-II, structural genomics, Pro structure initiative, NEW YORK SGX research center for STRU genomics, nysgxrc; 2.09A {Pseudomonas putida} SCOP: c.23.1.0 | Back alignment and structure |
|---|
Probab=91.99 E-value=1.3 Score=33.70 Aligned_cols=84 Identities=21% Similarity=0.275 Sum_probs=57.5
Q ss_pred HHHHHhCCCEEEEecCCHHHHHHHH-HcC-CCEEEEecCCCCcccCCCCchhhhHHHHHHHhCCCCCcEEeecCcCCHHH
Q 020013 103 VLEAHSAGVKVVPQVGSFDEARKAV-NAG-VDAIIVQGREAGGHVIGQDGLISLLPMVVDLIGDRDIPIIAAGGIVDARG 180 (332)
Q Consensus 103 i~~~~~~g~~v~~~v~s~~~a~~a~-~~g-~D~ivv~G~eaGGh~~~~~~~~~ll~~i~~~~~~~~iPviaaGGI~~~~~ 180 (332)
.+.+++.|..+.. +.+.+++.... +.. +|.|++.-.-. ....+.++..+++.- ..++|||+-.+-.+.+.
T Consensus 24 ~~~L~~~g~~v~~-~~~~~~a~~~~~~~~~~dlvi~D~~l~------~~~g~~~~~~l~~~~-~~~~~ii~~s~~~~~~~ 95 (136)
T 3hdv_A 24 ILYLKSRGIDAVG-ADGAEEARLYLHYQKRIGLMITDLRMQ------PESGLDLIRTIRASE-RAALSIIVVSGDTDVEE 95 (136)
T ss_dssp HHHHHHTTCCEEE-ESSHHHHHHHHHHCTTEEEEEECSCCS------SSCHHHHHHHHHTST-TTTCEEEEEESSCCHHH
T ss_pred HHHHHHcCceEEE-eCCHHHHHHHHHhCCCCcEEEEeccCC------CCCHHHHHHHHHhcC-CCCCCEEEEeCCCChHH
Confidence 3445566877654 66777766554 444 89888843211 123467778877641 12689999888889999
Q ss_pred HHHHHHcCcceeee
Q 020013 181 YVAALSLGAQGICL 194 (332)
Q Consensus 181 v~~al~~GA~gV~~ 194 (332)
+.+++..|++++..
T Consensus 96 ~~~~~~~g~~~~l~ 109 (136)
T 3hdv_A 96 AVDVMHLGVVDFLL 109 (136)
T ss_dssp HHHHHHTTCSEEEE
T ss_pred HHHHHhCCcceEEe
Confidence 99999999998864
|
| >2v9d_A YAGE; dihydrodipicolinic acid synthase, N-acetyl neuraminate lyase, NAL, lyase, DHDPS, prophage; 2.15A {Escherichia coli} PDB: 2v8z_A 3nev_A* 3n2x_A* | Back alignment and structure |
|---|
Probab=91.93 E-value=0.48 Score=43.71 Aligned_cols=79 Identities=20% Similarity=0.340 Sum_probs=49.6
Q ss_pred HHHHHHHcCCCEEEEecCCCCcccCCCCchhhhHHHHHHHhCCCCCcEEeecCcCCHHHHH----HHHHcCcceeeeccc
Q 020013 122 EARKAVNAGVDAIIVQGREAGGHVIGQDGLISLLPMVVDLIGDRDIPIIAAGGIVDARGYV----AALSLGAQGICLGTR 197 (332)
Q Consensus 122 ~a~~a~~~g~D~ivv~G~eaGGh~~~~~~~~~ll~~i~~~~~~~~iPviaaGGI~~~~~v~----~al~~GA~gV~~GT~ 197 (332)
.++...+.|+|+|++-|..+-++......-..++..+++...+ ++|||+.=|=.+-+++. .+-++|||++++-+.
T Consensus 57 lv~~li~~Gv~Gl~v~GtTGE~~~Ls~eEr~~vi~~~ve~~~g-rvpViaGvg~~st~eai~la~~A~~~Gadavlv~~P 135 (343)
T 2v9d_A 57 LIDDLIKAGVDGLFFLGSGGEFSQLGAEERKAIARFAIDHVDR-RVPVLIGTGGTNARETIELSQHAQQAGADGIVVINP 135 (343)
T ss_dssp HHHHHHHTTCSCEEESSTTTTGGGSCHHHHHHHHHHHHHHHTT-SSCEEEECCSSCHHHHHHHHHHHHHHTCSEEEEECC
T ss_pred HHHHHHHcCCCEEEeCccccChhhCCHHHHHHHHHHHHHHhCC-CCcEEEecCCCCHHHHHHHHHHHHhcCCCEEEECCC
Confidence 3445678899999997764444331222235566666766643 68988654432434433 344589999999999
Q ss_pred cccC
Q 020013 198 FVAS 201 (332)
Q Consensus 198 fl~t 201 (332)
+...
T Consensus 136 ~Y~~ 139 (343)
T 2v9d_A 136 YYWK 139 (343)
T ss_dssp SSSC
T ss_pred CCCC
Confidence 8754
|
| >2p10_A MLL9387 protein; putative phosphonopyruvate hydrolase, structural genomics, J center for structural genomics, JCSG; HET: MSE; 2.15A {Mesorhizobium loti} SCOP: c.1.12.9 | Back alignment and structure |
|---|
Probab=91.91 E-value=4.2 Score=36.18 Aligned_cols=121 Identities=14% Similarity=0.205 Sum_probs=76.6
Q ss_pred ccceecCCCC---CCCCcHHHHHHHHhCCCceeecCC---------------CCCCHHHHHHHHHHHHhhcCCcEEEEee
Q 020013 10 EYGIVQAPLG---PDISGPELVAAVANAGGLGLLRAP---------------DWEAPDYLRDLIRKTRSLTERPFGVGVV 71 (332)
Q Consensus 10 ~~Pii~apM~---~g~s~~~la~avs~aGglG~i~~~---------------~~~~~e~~~~~i~~~r~~~~~p~gvnl~ 71 (332)
+.||+.+ +. ++.....+..++.++|.-|++-.+ ..++.+...+.+++.+++ +. +-+-..
T Consensus 94 ~iPV~Ag-v~~~DP~~~~g~~Le~lk~~Gf~Gv~N~ptvglidG~fr~~LEE~gm~~~~eve~I~~A~~~-gL-~Ti~~v 170 (286)
T 2p10_A 94 HTPVLAG-VNGTDPFMVMSTFLRELKEIGFAGVQNFPTVGLIDGLFRQNLEETGMSYAQEVEMIAEAHKL-DL-LTTPYV 170 (286)
T ss_dssp SSCEEEE-ECTTCTTCCHHHHHHHHHHHTCCEEEECSCGGGCCHHHHHHHHHTTCCHHHHHHHHHHHHHT-TC-EECCEE
T ss_pred CCCEEEE-ECCcCCCcCHHHHHHHHHHhCCceEEECCCcccccchhhhhHhhcCCCHHHHHHHHHHHHHC-CC-eEEEec
Confidence 5687765 53 233466777999999998986432 123556666777777764 21 222111
Q ss_pred cCCCCHHHHHHHHhcCCcEEEEccCCC------------c---HHHHHH----HHh--CCCEEEEe---cCCHHHHHHHH
Q 020013 72 LAFPHNENIKAILSEKVAVLQVSWGEY------------S---EELVLE----AHS--AGVKVVPQ---VGSFDEARKAV 127 (332)
Q Consensus 72 ~~~~~~~~~~~~~~~~~~~I~~~~g~~------------~---~~~i~~----~~~--~g~~v~~~---v~s~~~a~~a~ 127 (332)
. +.+..+.+.+.++|+|..|.|.. . .++++. +++ .++.+++. +.++++++.++
T Consensus 171 ~---~~eeA~amA~agpDiI~~h~glT~gglIG~~~avs~~~~~e~i~~i~~a~~~vnpdvivLc~gGpIstpeDv~~~l 247 (286)
T 2p10_A 171 F---SPEDAVAMAKAGADILVCHMGLTTGGAIGARSGKSMDDCVSLINECIEAARTIRDDIIILSHGGPIANPEDARFIL 247 (286)
T ss_dssp C---SHHHHHHHHHHTCSEEEEECSCC---------CCCHHHHHHHHHHHHHHHHHHCSCCEEEEESTTCCSHHHHHHHH
T ss_pred C---CHHHHHHHHHcCCCEEEECCCCCCCCcccCCCcccHHHhHHHHHHHHHHHHHhCCCcEEEecCCCCCCHHHHHHHH
Confidence 1 25677788899999999886510 1 123322 232 46777754 46899999999
Q ss_pred Hc--CCCEEEE
Q 020013 128 NA--GVDAIIV 136 (332)
Q Consensus 128 ~~--g~D~ivv 136 (332)
+. |+|+++.
T Consensus 248 ~~t~G~~G~~g 258 (286)
T 2p10_A 248 DSCQGCHGFYG 258 (286)
T ss_dssp HHCTTCCEEEE
T ss_pred hcCCCccEEEe
Confidence 98 8999875
|
| >3vnd_A TSA, tryptophan synthase alpha chain; psychrophilic enzyme, cold adaptation; HET: PE8; 2.60A {Shewanella frigidimarina} | Back alignment and structure |
|---|
Probab=91.89 E-value=2.1 Score=37.88 Aligned_cols=120 Identities=13% Similarity=0.088 Sum_probs=77.7
Q ss_pred CccceecCCCCCCCCc-------HHHHHHHHhCCCceeecCCCCCCHHHHHHHHHHHHhhcCCcEEEEeecCCCCHHHHH
Q 020013 9 FEYGIVQAPLGPDISG-------PELVAAVANAGGLGLLRAPDWEAPDYLRDLIRKTRSLTERPFGVGVVLAFPHNENIK 81 (332)
Q Consensus 9 ~~~Pii~apM~~g~s~-------~~la~avs~aGglG~i~~~~~~~~e~~~~~i~~~r~~~~~p~gvnl~~~~~~~~~~~ 81 (332)
.+.|++ -|. ..+ ..++..++++|.=|++.. . .++++..+.++.+++. +. -.+-++.+....+.++
T Consensus 94 ~~~Piv--lm~--Y~npv~~~g~e~f~~~~~~aGvdgvii~-D-lp~ee~~~~~~~~~~~-gl-~~i~liaP~t~~eri~ 165 (267)
T 3vnd_A 94 PDMPIG--LLL--YANLVFANGIDEFYTKAQAAGVDSVLIA-D-VPVEESAPFSKAAKAH-GI-APIFIAPPNADADTLK 165 (267)
T ss_dssp TTCCEE--EEE--CHHHHHHHCHHHHHHHHHHHTCCEEEET-T-SCGGGCHHHHHHHHHT-TC-EEECEECTTCCHHHHH
T ss_pred CCCCEE--EEe--cCcHHHHhhHHHHHHHHHHcCCCEEEeC-C-CCHhhHHHHHHHHHHc-CC-eEEEEECCCCCHHHHH
Confidence 466887 464 223 568899999999998765 2 4667767777777663 21 1222333333457777
Q ss_pred HHHhcCCcEEEE--cc---CC------CcHHHHHHHHhC-CCEEEE--ecCCHHHHHHHHHcCCCEEEE
Q 020013 82 AILSEKVAVLQV--SW---GE------YSEELVLEAHSA-GVKVVP--QVGSFDEARKAVNAGVDAIIV 136 (332)
Q Consensus 82 ~~~~~~~~~I~~--~~---g~------~~~~~i~~~~~~-g~~v~~--~v~s~~~a~~a~~~g~D~ivv 136 (332)
.+.+....+|.+ .. |. ...++++++++. .++++. .++++++++.+...|+|++|+
T Consensus 166 ~i~~~~~gfvY~vS~~GvTG~~~~~~~~~~~~v~~vr~~~~~pv~vGfGI~~~e~~~~~~~~gADgvVV 234 (267)
T 3vnd_A 166 MVSEQGEGYTYLLSRAGVTGTESKAGEPIENILTQLAEFNAPPPLLGFGIAEPEQVRAAIKAGAAGAIS 234 (267)
T ss_dssp HHHHHCCSCEEESCCCCCC--------CHHHHHHHHHTTTCCCEEECSSCCSHHHHHHHHHTTCSEEEE
T ss_pred HHHHhCCCcEEEEecCCCCCCccCCcHHHHHHHHHHHHhcCCCEEEECCcCCHHHHHHHHHcCCCEEEE
Confidence 777776666654 11 21 123567777764 566664 467899999899999999999
|
| >1xg4_A Probable methylisocitrate lyase; 2-methylisocitrate lyase/inhibitor complex, isocitrate lyase superfamily; HET: ICT; 1.60A {Escherichia coli} PDB: 1xg3_A* 1mum_A 1oqf_A 1ujq_A 1o5q_A | Back alignment and structure |
|---|
Probab=91.87 E-value=1.6 Score=39.31 Aligned_cols=91 Identities=19% Similarity=0.198 Sum_probs=61.0
Q ss_pred HHHHHHh-CCCEEEEecCCHHHHHHHHHcCCCEEEEecCC----CCcccCCC-Cch---hhhHHHHHHHhCCCCCcEEee
Q 020013 102 LVLEAHS-AGVKVVPQVGSFDEARKAVNAGVDAIIVQGRE----AGGHVIGQ-DGL---ISLLPMVVDLIGDRDIPIIAA 172 (332)
Q Consensus 102 ~i~~~~~-~g~~v~~~v~s~~~a~~a~~~g~D~ivv~G~e----aGGh~~~~-~~~---~~ll~~i~~~~~~~~iPviaa 172 (332)
.++.+++ ....+++.+.+.-.|+.+.++|.|+|.+.|.. .-|+.+.. .+. ...+..|.+.. ++||++.
T Consensus 8 ~lr~l~~~~~~i~~~~a~D~~sA~~~~~aG~~ai~vs~~~~a~~~~G~pD~~~vt~~em~~~~~~I~~~~---~~PviaD 84 (295)
T 1xg4_A 8 AFRAALTKENPLQIVGTINANHALLAQRAGYQAIYLSGGGVAAGSLGLPDLGISTLDDVLTDIRRITDVC---SLPLLVD 84 (295)
T ss_dssp HHHHHHHHSSSEEEEECSSHHHHHHHHHTTCSCEEECHHHHHHTTTCCCSSSCSCHHHHHHHHHHHHHHC---CSCEEEE
T ss_pred HHHHHHhCCCcEEEecCcCHHHHHHHHHcCCCEEEECchHhhhhhcCCCCCCCCCHHHHHHHHHHHHhhC---CCCEEec
Confidence 3444444 45778899999999999999999999997762 22444322 222 33445555555 7899987
Q ss_pred c--CcC-CHHH----HHHHHHcCcceeeec
Q 020013 173 G--GIV-DARG----YVAALSLGAQGICLG 195 (332)
Q Consensus 173 G--GI~-~~~~----v~~al~~GA~gV~~G 195 (332)
. |-+ ++.+ +..++.+||+||.+=
T Consensus 85 ~d~Gyg~~~~~~~~~v~~l~~aGa~gv~iE 114 (295)
T 1xg4_A 85 ADIGFGSSAFNVARTVKSMIKAGAAGLHIE 114 (295)
T ss_dssp CTTCSSSSHHHHHHHHHHHHHHTCSEEEEE
T ss_pred CCcccCCCHHHHHHHHHHHHHcCCeEEEEC
Confidence 6 333 5544 456677999999873
|
| >1qop_A Tryptophan synthase alpha chain; lyase, carbon-oxygen lyase, tryptophan biosynthesis, pyridoxal phosphate; HET: IPL PLP; 1.4A {Salmonella typhimurium} SCOP: c.1.2.4 PDB: 1k8x_A* 1wbj_A* 2clk_A* 2j9z_A* 3cep_A* 1k8y_A* 1a5s_A* 1a50_A* 1c29_A* 1c8v_A* 1c9d_A* 1bks_A* 1cx9_A* 1fuy_A* 1cw2_A* 1k7e_A* 1k7f_A* 1k7x_A* 1k3u_A* 1k8z_A* ... | Back alignment and structure |
|---|
Probab=91.87 E-value=2.9 Score=36.83 Aligned_cols=108 Identities=14% Similarity=0.085 Sum_probs=68.6
Q ss_pred HHHHHHHHhCCCceeecCCCCCCHHHHHHHHHHHHhhcCCcEEEEeecCCCCHHHHHHHHhcCCcEEEE-c----cCC--
Q 020013 25 PELVAAVANAGGLGLLRAPDWEAPDYLRDLIRKTRSLTERPFGVGVVLAFPHNENIKAILSEKVAVLQV-S----WGE-- 97 (332)
Q Consensus 25 ~~la~avs~aGglG~i~~~~~~~~e~~~~~i~~~r~~~~~p~gvnl~~~~~~~~~~~~~~~~~~~~I~~-~----~g~-- 97 (332)
..++....++|.=|++.. . .+.+++.+.++.+++. +... +-++.+....+.++.+.+....++.. + .|.
T Consensus 112 ~~~~~~~~~aGadgii~~-d-~~~e~~~~~~~~~~~~-g~~~-i~l~~p~t~~~~i~~i~~~~~g~v~~~s~~G~tG~~~ 187 (268)
T 1qop_A 112 DAFYARCEQVGVDSVLVA-D-VPVEESAPFRQAALRH-NIAP-IFICPPNADDDLLRQVASYGRGYTYLLSRSGVTGAEN 187 (268)
T ss_dssp HHHHHHHHHHTCCEEEET-T-CCGGGCHHHHHHHHHT-TCEE-ECEECTTCCHHHHHHHHHHCCSCEEEESSSSCCCSSS
T ss_pred HHHHHHHHHcCCCEEEEc-C-CCHHHHHHHHHHHHHc-CCcE-EEEECCCCCHHHHHHHHhhCCCcEEEEecCCcCCCcc
Confidence 578888889998888865 2 4556667777777764 2212 22232323345566655554444432 1 121
Q ss_pred ----CcHHHHHHHHhC-CCEEEE--ecCCHHHHHHHHHcCCCEEEE
Q 020013 98 ----YSEELVLEAHSA-GVKVVP--QVGSFDEARKAVNAGVDAIIV 136 (332)
Q Consensus 98 ----~~~~~i~~~~~~-g~~v~~--~v~s~~~a~~a~~~g~D~ivv 136 (332)
+..++++++++. ++++.. .+++.+++..+...|+|++|+
T Consensus 188 ~~~~~~~~~i~~lr~~~~~pi~vggGI~t~e~~~~~~~agAD~vVV 233 (268)
T 1qop_A 188 RGALPLHHLIEKLKEYHAAPALQGFGISSPEQVSAAVRAGAAGAIS 233 (268)
T ss_dssp CC--CCHHHHHHHHHTTCCCEEEESSCCSHHHHHHHHHTTCSEEEE
T ss_pred CCCchHHHHHHHHHhccCCcEEEECCCCCHHHHHHHHHcCCCEEEE
Confidence 135778888874 566654 467899999999999999998
|
| >3qfe_A Putative dihydrodipicolinate synthase family PROT; seattle structural genomics center for infectious disease, S coccidioides, valley fever; 2.35A {Coccidioides immitis} | Back alignment and structure |
|---|
Probab=91.79 E-value=0.29 Score=44.67 Aligned_cols=121 Identities=14% Similarity=0.220 Sum_probs=63.9
Q ss_pred HHHHHHHcCCCEEEEecCCCCcccCCCCchhhhHHHHHHHhCCCCCcEEeecCcCCHHHHH----HHHHcCcceeeeccc
Q 020013 122 EARKAVNAGVDAIIVQGREAGGHVIGQDGLISLLPMVVDLIGDRDIPIIAAGGIVDARGYV----AALSLGAQGICLGTR 197 (332)
Q Consensus 122 ~a~~a~~~g~D~ivv~G~eaGGh~~~~~~~~~ll~~i~~~~~~~~iPviaaGGI~~~~~v~----~al~~GA~gV~~GT~ 197 (332)
.+....+.|+|+|++-|..+-+.......-..++..+++.... ++|||+.=|=.+-++.. .+-.+|||++++-+.
T Consensus 37 lv~~li~~Gv~gl~v~GtTGE~~~Ls~~Er~~v~~~~~~~~~g-rvpviaGvg~~~t~~ai~la~~a~~~Gadavlv~~P 115 (318)
T 3qfe_A 37 YYAYLARSGLTGLVILGTNAEAFLLTREERAQLIATARKAVGP-DFPIMAGVGAHSTRQVLEHINDASVAGANYVLVLPP 115 (318)
T ss_dssp HHHHHHTTTCSEEEESSGGGTGGGSCHHHHHHHHHHHHHHHCT-TSCEEEECCCSSHHHHHHHHHHHHHHTCSEEEECCC
T ss_pred HHHHHHHcCCCEEEeCccccChhhCCHHHHHHHHHHHHHHhCC-CCcEEEeCCCCCHHHHHHHHHHHHHcCCCEEEEeCC
Confidence 3455678899999997664333321212234566666666643 68988644432444433 334589999999999
Q ss_pred cccCc---cCCCCHHHHHHHhcCCCceEEEEecccCCCCCC-ceeecChHHHhhh
Q 020013 198 FVASE---ESYAHPEYKRKLVEMDKTEYTDVFGRARWPGAP-HRVLQTPFFSNWK 248 (332)
Q Consensus 198 fl~t~---Es~~~~~~k~~~~~~~~t~~t~~~~~~~~~g~~-~R~l~n~~~~~~~ 248 (332)
+...+ +...-+ |=+.|.++.+.- ..+++ .|++. +.-+....+.++.
T Consensus 116 ~y~~kp~~~~~l~~-~f~~ia~a~~lP-iilYn---~P~~t~g~~l~~~~~~~La 165 (318)
T 3qfe_A 116 AYFGKATTPPVIKS-FFDDVSCQSPLP-VVIYN---FPGVCNGIDLDSDMITTIA 165 (318)
T ss_dssp CC---CCCHHHHHH-HHHHHHHHCSSC-EEEEE---CCC----CCCCHHHHHHHH
T ss_pred cccCCCCCHHHHHH-HHHHHHhhCCCC-EEEEe---CCcccCCCCCCHHHHHHHH
Confidence 55431 212222 333444444433 23454 24543 4446656665554
|
| >3f6p_A Transcriptional regulatory protein YYCF; unphosphorelated, receiver domain, cytoplasm, DNA-binding, phosphoprotein, transcription regulation; 1.95A {Bacillus subtilis} SCOP: c.23.1.1 PDB: 2zwm_A | Back alignment and structure |
|---|
Probab=91.70 E-value=1.9 Score=32.08 Aligned_cols=81 Identities=20% Similarity=0.164 Sum_probs=57.3
Q ss_pred HHHHhCCCEEEEecCCHHHHHHHH-HcCCCEEEEecCCCCcccCCCCchhhhHHHHHHHhCCCCCcEEeecCcCCHHHHH
Q 020013 104 LEAHSAGVKVVPQVGSFDEARKAV-NAGVDAIIVQGREAGGHVIGQDGLISLLPMVVDLIGDRDIPIIAAGGIVDARGYV 182 (332)
Q Consensus 104 ~~~~~~g~~v~~~v~s~~~a~~a~-~~g~D~ivv~G~eaGGh~~~~~~~~~ll~~i~~~~~~~~iPviaaGGI~~~~~v~ 182 (332)
..++..|..+. .+.+.+++.... +..+|.|++.-.-.+ ...+.++..+++.. ++|+|.-.+-.+.....
T Consensus 20 ~~L~~~g~~v~-~~~~~~~al~~~~~~~~dlii~D~~~p~------~~g~~~~~~lr~~~---~~~ii~~t~~~~~~~~~ 89 (120)
T 3f6p_A 20 FNLRKEGYEVH-CAHDGNEAVEMVEELQPDLILLDIMLPN------KDGVEVCREVRKKY---DMPIIMLTAKDSEIDKV 89 (120)
T ss_dssp HHHHHTTCEEE-EESSHHHHHHHHHTTCCSEEEEETTSTT------THHHHHHHHHHTTC---CSCEEEEEESSCHHHHH
T ss_pred HHHHhCCEEEE-EeCCHHHHHHHHhhCCCCEEEEeCCCCC------CCHHHHHHHHHhcC---CCCEEEEECCCChHHHH
Confidence 34556777765 577888887655 457999998532111 13367777777643 68988888877888889
Q ss_pred HHHHcCcceeee
Q 020013 183 AALSLGAQGICL 194 (332)
Q Consensus 183 ~al~~GA~gV~~ 194 (332)
.++.+||+++..
T Consensus 90 ~~~~~ga~~~l~ 101 (120)
T 3f6p_A 90 IGLEIGADDYVT 101 (120)
T ss_dssp HHHHTTCCEEEE
T ss_pred HHHhCCcceeEc
Confidence 999999998764
|
| >3t6k_A Response regulator receiver; flavodoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative; HET: MSE; 1.86A {Chloroflexus aurantiacus} SCOP: c.23.1.0 | Back alignment and structure |
|---|
Probab=91.70 E-value=2.4 Score=32.36 Aligned_cols=84 Identities=21% Similarity=0.147 Sum_probs=58.1
Q ss_pred HHHHhCCCEEEEecCCHHHHHHHH-HcCCCEEEEecCCCCcccCCCCchhhhHHHHHHHhCCCCCcEEeecCcCCHHHHH
Q 020013 104 LEAHSAGVKVVPQVGSFDEARKAV-NAGVDAIIVQGREAGGHVIGQDGLISLLPMVVDLIGDRDIPIIAAGGIVDARGYV 182 (332)
Q Consensus 104 ~~~~~~g~~v~~~v~s~~~a~~a~-~~g~D~ivv~G~eaGGh~~~~~~~~~ll~~i~~~~~~~~iPviaaGGI~~~~~v~ 182 (332)
..+++.|..+. .+.+.+++.... +..+|.|++.=.-. ....+.++..+++.....++|||.-.+-.+.+...
T Consensus 22 ~~L~~~g~~v~-~~~~~~~al~~~~~~~~dlvl~D~~lp------~~~g~~~~~~lr~~~~~~~~pii~~t~~~~~~~~~ 94 (136)
T 3t6k_A 22 LVLRGAGYEVR-RAASGEEALQQIYKNLPDALICDVLLP------GIDGYTLCKRVRQHPLTKTLPILMLTAQGDISAKI 94 (136)
T ss_dssp HHHHHTTCEEE-EESSHHHHHHHHHHSCCSEEEEESCCS------SSCHHHHHHHHHHSGGGTTCCEEEEECTTCHHHHH
T ss_pred HHHHHCCCEEE-EeCCHHHHHHHHHhCCCCEEEEeCCCC------CCCHHHHHHHHHcCCCcCCccEEEEecCCCHHHHH
Confidence 34556777765 577888877654 46799999853211 12336777777763211268999888888889999
Q ss_pred HHHHcCcceeee
Q 020013 183 AALSLGAQGICL 194 (332)
Q Consensus 183 ~al~~GA~gV~~ 194 (332)
+++.+||+++..
T Consensus 95 ~~~~~ga~~~l~ 106 (136)
T 3t6k_A 95 AGFEAGANDYLA 106 (136)
T ss_dssp HHHHHTCSEEEE
T ss_pred HHHhcCcceEEe
Confidence 999999998754
|
| >2hjp_A Phosphonopyruvate hydrolase; phosporus-Ca cleavage, PEP mutase/isocitrate lyase superfamily; HET: XYS PPR; 1.90A {Variovorax SP} PDB: 2dua_A* 2hrw_A | Back alignment and structure |
|---|
Probab=91.63 E-value=4.7 Score=36.10 Aligned_cols=183 Identities=14% Similarity=0.118 Sum_probs=105.4
Q ss_pred hhhcCCccceecCCCCCCCCcHHHHHHHHhCCCceee----------cCC--CCCCHHHHHHHHHHHHhhcCCcEEEEee
Q 020013 4 RGMLGFEYGIVQAPLGPDISGPELVAAVANAGGLGLL----------RAP--DWEAPDYLRDLIRKTRSLTERPFGVGVV 71 (332)
Q Consensus 4 ~~~l~~~~Pii~apM~~g~s~~~la~avs~aGglG~i----------~~~--~~~~~e~~~~~i~~~r~~~~~p~gvnl~ 71 (332)
.+++.-.-||+ |. +.-++-.+..+.++|.=.+. +.+ ...+.+++...++.+...++.|+-+.+-
T Consensus 8 r~l~~~~~~i~---~~-~a~D~~sA~~~~~aG~~ai~vs~~~~a~~~G~pD~~~vt~~em~~~~~~I~~~~~~PviaD~d 83 (290)
T 2hjp_A 8 RAALDSGRLFT---AM-AAHNPLVAKLAEQAGFGGIWGSGFELSASYAVPDANILSMSTHLEMMRAIASTVSIPLIADID 83 (290)
T ss_dssp HHHHHHCCCEE---EE-ECSSHHHHHHHHHHTCSEEEECHHHHHHHTTSCTTTCSCHHHHHHHHHHHHTTCSSCEEEECT
T ss_pred HHHHhCCCcEE---Ee-cCCCHHHHHHHHHcCCCEEEEChHHHHHhCCCCCCCCCCHHHHHHHHHHHHhcCCCCEEEECC
Confidence 34443334554 32 46688888878777631111 111 1346677777777777777888666542
Q ss_pred cCCCC----HHHHHHHHhcCCcEEEEccCC---------------CcH-HHHHHHH---h----CCCEEEEecCC-----
Q 020013 72 LAFPH----NENIKAILSEKVAVLQVSWGE---------------YSE-ELVLEAH---S----AGVKVVPQVGS----- 119 (332)
Q Consensus 72 ~~~~~----~~~~~~~~~~~~~~I~~~~g~---------------~~~-~~i~~~~---~----~g~~v~~~v~s----- 119 (332)
.-... .+.+..+.+.|+..|.+--+. .|. +.+++++ + .+..|..-...
T Consensus 84 ~Gyg~~~~~~~~v~~l~~aGa~gv~iED~~~~k~cgH~~~~~k~l~p~~e~~~kI~Aa~~a~~~~~~~i~aRtda~~a~~ 163 (290)
T 2hjp_A 84 TGFGNAVNVHYVVPQYEAAGASAIVMEDKTFPKDTSLRTDGRQELVRIEEFQGKIAAATAARADRDFVVIARVEALIAGL 163 (290)
T ss_dssp TTTSSHHHHHHHHHHHHHHTCSEEEEECBCSSCCC-------CCBCCHHHHHHHHHHHHHHCSSTTSEEEEEECTTTTTC
T ss_pred CCCCCHHHHHHHHHHHHHhCCeEEEEcCCCCCccccccccCCCcccCHHHHHHHHHHHHHhcccCCcEEEEeehHhhccc
Confidence 22111 234556677899999873111 122 4455544 2 35667654432
Q ss_pred -HHH----HHHHHHcCCCEEEEecCCCCcccCCCCchhhhHHHHHHHhCCCCCcEEeecCcCCHHHHHHHHHcC-cceee
Q 020013 120 -FDE----ARKAVNAGVDAIIVQGREAGGHVIGQDGLISLLPMVVDLIGDRDIPIIAAGGIVDARGYVAALSLG-AQGIC 193 (332)
Q Consensus 120 -~~~----a~~a~~~g~D~ivv~G~eaGGh~~~~~~~~~ll~~i~~~~~~~~iPviaaGGI~~~~~v~~al~~G-A~gV~ 193 (332)
.++ ++...++|+|.|++++. .++...+.++.+.+.. .+|+++.-.-...-+..+.-++| ..-|.
T Consensus 164 g~~~ai~Ra~ay~eAGAd~i~~e~~---------~~~~~~~~~i~~~~~~-~vP~i~n~~~~~~~~~~eL~~lG~v~~v~ 233 (290)
T 2hjp_A 164 GQQEAVRRGQAYEEAGADAILIHSR---------QKTPDEILAFVKSWPG-KVPLVLVPTAYPQLTEADIAALSKVGIVI 233 (290)
T ss_dssp CHHHHHHHHHHHHHTTCSEEEECCC---------CSSSHHHHHHHHHCCC-SSCEEECGGGCTTSCHHHHHTCTTEEEEE
T ss_pred cHHHHHHHHHHHHHcCCcEEEeCCC---------CCCHHHHHHHHHHcCC-CCCEEEeccCCCCCCHHHHHhcCCeeEEE
Confidence 243 44567899999999641 1224566788888731 39999641100112456667789 99999
Q ss_pred ecccccc
Q 020013 194 LGTRFVA 200 (332)
Q Consensus 194 ~GT~fl~ 200 (332)
.|...+.
T Consensus 234 ~~~~~~r 240 (290)
T 2hjp_A 234 YGNHAIR 240 (290)
T ss_dssp ECSHHHH
T ss_pred echHHHH
Confidence 8877653
|
| >3kht_A Response regulator; PSI-II, 11023K, structural genomics, Pro structure initiative, NEW YORK SGX research center for STRU genomics, nysgxrc; 2.10A {Hahella chejuensis} SCOP: c.23.1.0 | Back alignment and structure |
|---|
Probab=91.62 E-value=2.1 Score=32.88 Aligned_cols=85 Identities=15% Similarity=0.076 Sum_probs=58.5
Q ss_pred HHHHhCCCE-EEEecCCHHHHHHHHH-cCCCEEEEecCCCCcccCCCCchhhhHHHHHHHhCCCCCcEEeecCcCCHHHH
Q 020013 104 LEAHSAGVK-VVPQVGSFDEARKAVN-AGVDAIIVQGREAGGHVIGQDGLISLLPMVVDLIGDRDIPIIAAGGIVDARGY 181 (332)
Q Consensus 104 ~~~~~~g~~-v~~~v~s~~~a~~a~~-~g~D~ivv~G~eaGGh~~~~~~~~~ll~~i~~~~~~~~iPviaaGGI~~~~~v 181 (332)
+.++..|.. .+..+.+.+++..... ..+|.|++.-.-.+ ...+.++..+++.....++|||+-.+-.+.+.+
T Consensus 23 ~~L~~~~~~~~v~~~~~~~~a~~~l~~~~~dlii~D~~l~~------~~g~~~~~~lr~~~~~~~~pii~~s~~~~~~~~ 96 (144)
T 3kht_A 23 RVLDRKDIHCQLEFVDNGAKALYQVQQAKYDLIILDIGLPI------ANGFEVMSAVRKPGANQHTPIVILTDNVSDDRA 96 (144)
T ss_dssp HHHHHTTCCEEEEEESSHHHHHHHHTTCCCSEEEECTTCGG------GCHHHHHHHHHSSSTTTTCCEEEEETTCCHHHH
T ss_pred HHHHhcCCCeeEEEECCHHHHHHHhhcCCCCEEEEeCCCCC------CCHHHHHHHHHhcccccCCCEEEEeCCCCHHHH
Confidence 445556665 3566778888876654 46899998432111 133677778776211126899998888899999
Q ss_pred HHHHHcCcceeee
Q 020013 182 VAALSLGAQGICL 194 (332)
Q Consensus 182 ~~al~~GA~gV~~ 194 (332)
.+++.+||+++..
T Consensus 97 ~~~~~~ga~~~l~ 109 (144)
T 3kht_A 97 KQCMAAGASSVVD 109 (144)
T ss_dssp HHHHHTTCSEEEE
T ss_pred HHHHHcCCCEEEE
Confidence 9999999998764
|
| >1dbw_A Transcriptional regulatory protein FIXJ; doubly wound five-stranded beta/alpha fold, nitrogen fixatio regulation; HET: 15P; 1.60A {Sinorhizobium meliloti} SCOP: c.23.1.1 PDB: 1dck_A* 1dcm_A 1d5w_A* | Back alignment and structure |
|---|
Probab=91.62 E-value=2.8 Score=31.25 Aligned_cols=82 Identities=21% Similarity=0.106 Sum_probs=56.7
Q ss_pred HHHHhCCCEEEEecCCHHHHHHHHH-cCCCEEEEecCCCCcccCCCCchhhhHHHHHHHhCCCCCcEEeecCcCCHHHHH
Q 020013 104 LEAHSAGVKVVPQVGSFDEARKAVN-AGVDAIIVQGREAGGHVIGQDGLISLLPMVVDLIGDRDIPIIAAGGIVDARGYV 182 (332)
Q Consensus 104 ~~~~~~g~~v~~~v~s~~~a~~a~~-~g~D~ivv~G~eaGGh~~~~~~~~~ll~~i~~~~~~~~iPviaaGGI~~~~~v~ 182 (332)
..+...|..+. .+.+.+++..... ..+|.+++.=.-.+ ...+.++..+++... ++|||.-.+-.+.+.+.
T Consensus 21 ~~l~~~~~~v~-~~~~~~~~~~~~~~~~~dlvi~D~~l~~------~~g~~~~~~l~~~~~--~~~ii~~s~~~~~~~~~ 91 (126)
T 1dbw_A 21 FMLTMNGFAVK-MHQSAEAFLAFAPDVRNGVLVTDLRMPD------MSGVELLRNLGDLKI--NIPSIVITGHGDVPMAV 91 (126)
T ss_dssp HHHHHTTCEEE-EESCHHHHHHHGGGCCSEEEEEECCSTT------SCHHHHHHHHHHTTC--CCCEEEEECTTCHHHHH
T ss_pred HHHHhCCcEEE-EeCCHHHHHHHHhcCCCCEEEEECCCCC------CCHHHHHHHHHhcCC--CCCEEEEECCCCHHHHH
Confidence 34455677765 5778887776554 46898888532111 123567777776432 68999888888889999
Q ss_pred HHHHcCcceeee
Q 020013 183 AALSLGAQGICL 194 (332)
Q Consensus 183 ~al~~GA~gV~~ 194 (332)
.++..||+++..
T Consensus 92 ~~~~~ga~~~l~ 103 (126)
T 1dbw_A 92 EAMKAGAVDFIE 103 (126)
T ss_dssp HHHHTTCSEEEE
T ss_pred HHHHhCHHHhee
Confidence 999999988764
|
| >3crn_A Response regulator receiver domain protein, CHEY-; structural genomics, signal regulator receiver domain; HET: PHD; 1.58A {Methanospirillum hungatei jf-1} | Back alignment and structure |
|---|
Probab=91.62 E-value=2.9 Score=31.57 Aligned_cols=82 Identities=16% Similarity=0.086 Sum_probs=57.8
Q ss_pred HHHHhCCCEEEEecCCHHHHHHHH-HcCCCEEEEecCCCCcccCCCCchhhhHHHHHHHhCCCCCcEEeecCcCCHHHHH
Q 020013 104 LEAHSAGVKVVPQVGSFDEARKAV-NAGVDAIIVQGREAGGHVIGQDGLISLLPMVVDLIGDRDIPIIAAGGIVDARGYV 182 (332)
Q Consensus 104 ~~~~~~g~~v~~~v~s~~~a~~a~-~~g~D~ivv~G~eaGGh~~~~~~~~~ll~~i~~~~~~~~iPviaaGGI~~~~~v~ 182 (332)
..++..|..+. .+.+.+++.... ...+|.|++.-.-. ....+.++..+++... ++|+|+-.+-.+.+...
T Consensus 21 ~~L~~~g~~v~-~~~~~~~al~~~~~~~~dlvl~D~~l~------~~~g~~~~~~l~~~~~--~~~ii~~s~~~~~~~~~ 91 (132)
T 3crn_A 21 QILEFEGYEVE-IAATAGEGLAKIENEFFNLALFXIKLP------DMEGTELLEKAHKLRP--GMKKIMVTGYASLENSV 91 (132)
T ss_dssp HHHHHTTCEEE-EESSHHHHHHHHHHSCCSEEEECSBCS------SSBHHHHHHHHHHHCT--TSEEEEEESCCCHHHHH
T ss_pred HHHHHCCceEE-EeCCHHHHHHHHhcCCCCEEEEecCCC------CCchHHHHHHHHhhCC--CCcEEEEeccccHHHHH
Confidence 34555687765 677877776654 45799999843211 1133667777766432 68999988888889999
Q ss_pred HHHHcCcceeee
Q 020013 183 AALSLGAQGICL 194 (332)
Q Consensus 183 ~al~~GA~gV~~ 194 (332)
.++..||+++..
T Consensus 92 ~~~~~ga~~~l~ 103 (132)
T 3crn_A 92 FSLNAGADAYIM 103 (132)
T ss_dssp HHHHTTCSEEEE
T ss_pred HHHhccchhhcc
Confidence 999999998764
|
| >3m5v_A DHDPS, dihydrodipicolinate synthase; TIM barrel, csgid, amino-acid biosynthesis, diaminopimelate biosynthesis, lyase, lysine biosynthesis; HET: MSE; 1.80A {Campylobacter jejuni} SCOP: c.1.10.0 PDB: 3ler_A* | Back alignment and structure |
|---|
Probab=91.61 E-value=0.61 Score=42.12 Aligned_cols=80 Identities=16% Similarity=0.285 Sum_probs=49.6
Q ss_pred HHHHHHHcCCCEEEEecCCCCcccCCCCchhhhHHHHHHHhCCCCCcEEeecCcCCHHHHH----HHHHcCcceeeeccc
Q 020013 122 EARKAVNAGVDAIIVQGREAGGHVIGQDGLISLLPMVVDLIGDRDIPIIAAGGIVDARGYV----AALSLGAQGICLGTR 197 (332)
Q Consensus 122 ~a~~a~~~g~D~ivv~G~eaGGh~~~~~~~~~ll~~i~~~~~~~~iPviaaGGI~~~~~v~----~al~~GA~gV~~GT~ 197 (332)
.++...+.|+|+|++-|..+-++......-..++..+++...+.++|||+.=|=.+-++.. .+-.+|||++++-+.
T Consensus 33 lv~~li~~Gv~gl~v~GttGE~~~Ls~~Er~~v~~~~~~~~~g~rvpviaGvg~~~t~~ai~la~~a~~~Gadavlv~~P 112 (301)
T 3m5v_A 33 LIKRQIENGIDAVVPVGTTGESATLTHEEHRTCIEIAVETCKGTKVKVLAGAGSNATHEAVGLAKFAKEHGADGILSVAP 112 (301)
T ss_dssp HHHHHHHTTCCEEECSSTTTTGGGSCHHHHHHHHHHHHHHHTTSSCEEEEECCCSSHHHHHHHHHHHHHTTCSEEEEECC
T ss_pred HHHHHHHcCCCEEEECccccChhhCCHHHHHHHHHHHHHHhCCCCCeEEEeCCCCCHHHHHHHHHHHHHcCCCEEEEcCC
Confidence 3445678899999997664433321112234556666666642258988754432444443 344589999999998
Q ss_pred cccC
Q 020013 198 FVAS 201 (332)
Q Consensus 198 fl~t 201 (332)
+...
T Consensus 113 ~y~~ 116 (301)
T 3m5v_A 113 YYNK 116 (301)
T ss_dssp CSSC
T ss_pred CCCC
Confidence 8764
|
| >2r25_B Osmosensing histidine protein kinase SLN1; alpha5-BETA5, response regulator, four helix bundle, histidine phosphotransfer (HPT) protein; 1.70A {Saccharomyces cerevisiae} SCOP: c.23.1.1 PDB: 1oxk_B 1oxb_B | Back alignment and structure |
|---|
Probab=91.61 E-value=2.5 Score=32.09 Aligned_cols=83 Identities=17% Similarity=0.169 Sum_probs=56.6
Q ss_pred HHHhCCCEEEEecCCHHHHHHHHH------cCCCEEEEecCCCCcccCCCCchhhhHHHHHHHhCCCCCcEEeecCcCCH
Q 020013 105 EAHSAGVKVVPQVGSFDEARKAVN------AGVDAIIVQGREAGGHVIGQDGLISLLPMVVDLIGDRDIPIIAAGGIVDA 178 (332)
Q Consensus 105 ~~~~~g~~v~~~v~s~~~a~~a~~------~g~D~ivv~G~eaGGh~~~~~~~~~ll~~i~~~~~~~~iPviaaGGI~~~ 178 (332)
.++..|...+..+.+.+++..... ..+|.|++.=.-. ....+.++..+++... ..+|||.-.+-.+.
T Consensus 21 ~L~~~g~~~v~~~~~~~~al~~~~~~~~~~~~~dlvllD~~mp------~~~G~~~~~~lr~~~~-~~~~ii~lt~~~~~ 93 (133)
T 2r25_B 21 MLNLEGIENIELACDGQEAFDKVKELTSKGENYNMIFMDVQMP------KVDGLLSTKMIRRDLG-YTSPIVALTAFADD 93 (133)
T ss_dssp HHHHTTCCCEEEESSHHHHHHHHHHHHHHTCCCSEEEECSCCS------SSCHHHHHHHHHHHSC-CCSCEEEEESCCSH
T ss_pred HHHHcCCceEEEECCHHHHHHHHHHHHhcCCCCCEEEEeCCCC------CCChHHHHHHHHhhcC-CCCCEEEEECCCCH
Confidence 344567655666777777766543 4689999842211 1123677777775322 25899988888888
Q ss_pred HHHHHHHHcCcceeee
Q 020013 179 RGYVAALSLGAQGICL 194 (332)
Q Consensus 179 ~~v~~al~~GA~gV~~ 194 (332)
+.+.+++.+||++...
T Consensus 94 ~~~~~~~~~ga~~~l~ 109 (133)
T 2r25_B 94 SNIKECLESGMNGFLS 109 (133)
T ss_dssp HHHHHHHHTTCSEEEE
T ss_pred HHHHHHHHcCCCEEEe
Confidence 9999999999998764
|
| >1ydo_A HMG-COA lyase; TIM-barrel protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG,; 2.71A {Bacillus subtilis subsp} | Back alignment and structure |
|---|
Probab=91.61 E-value=2.3 Score=38.40 Aligned_cols=112 Identities=12% Similarity=0.141 Sum_probs=71.8
Q ss_pred CHHHHHHHHhcCCcEEEEccCCCc------------------HHHHHHHHhCCCEEEEec-----------CCHHH----
Q 020013 76 HNENIKAILSEKVAVLQVSWGEYS------------------EELVLEAHSAGVKVVPQV-----------GSFDE---- 122 (332)
Q Consensus 76 ~~~~~~~~~~~~~~~I~~~~g~~~------------------~~~i~~~~~~g~~v~~~v-----------~s~~~---- 122 (332)
....++.+.+.+++.|.+.....+ .+.++.+++.|..+-..+ .+++.
T Consensus 83 ~~~~i~~a~~~g~~~v~i~~~~sd~~~~~~l~~s~~e~l~~~~~~v~~ak~~G~~v~~~i~~~~~~~~~~~~~~~~~~~~ 162 (307)
T 1ydo_A 83 NQRGLENALEGGINEACVFMSASETHNRKNINKSTSESLHILKQVNNDAQKANLTTRAYLSTVFGCPYEKDVPIEQVIRL 162 (307)
T ss_dssp SHHHHHHHHHHTCSEEEEEEESSHHHHHTTTCSCHHHHHHHHHHHHHHHHHTTCEEEEEEECTTCBTTTBCCCHHHHHHH
T ss_pred CHHhHHHHHhCCcCEEEEEeecCHHHHHHHhCCCHHHHHHHHHHHHHHHHHCCCEEEEEEEEEecCCcCCCCCHHHHHHH
Confidence 466788899999999876532211 234666788899874321 24444
Q ss_pred HHHHHHcCCCEEEEecCCCCcccCCCCchhhhHHHHHHHhCCCCCcEEee----cCcCCHHHHHHHHHcCcceee
Q 020013 123 ARKAVNAGVDAIIVQGREAGGHVIGQDGLISLLPMVVDLIGDRDIPIIAA----GGIVDARGYVAALSLGAQGIC 193 (332)
Q Consensus 123 a~~a~~~g~D~ivv~G~eaGGh~~~~~~~~~ll~~i~~~~~~~~iPviaa----GGI~~~~~v~~al~~GA~gV~ 193 (332)
++.+.+.|+|.|.+--+ -|.. .+.....++..+++.++ ++|+-.- -|.+ -.|..+++.+||+-|.
T Consensus 163 ~~~~~~~Ga~~i~l~DT--~G~~-~P~~v~~lv~~l~~~~~--~~~l~~H~Hnd~Gla-~AN~laAv~aGa~~vd 231 (307)
T 1ydo_A 163 SEALFEFGISELSLGDT--IGAA-NPAQVETVLEALLARFP--ANQIALHFHDTRGTA-LANMVTALQMGITVFD 231 (307)
T ss_dssp HHHHHHHTCSCEEEECS--SCCC-CHHHHHHHHHHHHTTSC--GGGEEEECBGGGSCH-HHHHHHHHHHTCCEEE
T ss_pred HHHHHhcCCCEEEEcCC--CCCc-CHHHHHHHHHHHHHhCC--CCeEEEEECCCCchH-HHHHHHHHHhCCCEEE
Confidence 44567889999988433 2222 23344667777776553 4676554 5774 4777888999998665
|
| >2otd_A Glycerophosphodiester phosphodiesterase; structural genomics PSI-2, protein structure initiative, midwest center for STR genomics, hydrolase; 2.60A {Shigella flexneri} | Back alignment and structure |
|---|
Probab=91.60 E-value=1.1 Score=38.89 Aligned_cols=60 Identities=15% Similarity=0.199 Sum_probs=48.3
Q ss_pred HHHHHhcCCcEEEEccCCCcHHHHHHHHhCCCEEEE-ecCCHHHHHHHHHcCCCEEEEecC
Q 020013 80 IKAILSEKVAVLQVSWGEYSEELVLEAHSAGVKVVP-QVGSFDEARKAVNAGVDAIIVQGR 139 (332)
Q Consensus 80 ~~~~~~~~~~~I~~~~g~~~~~~i~~~~~~g~~v~~-~v~s~~~a~~a~~~g~D~ivv~G~ 139 (332)
.+.+.+.+++.+..+.....+++++.+++.|++|+. ++.+.++.+.+.+.|+|+|+..-+
T Consensus 177 ~~~~~~~~~~~i~~~~~~~~~~~v~~~~~~G~~v~~wTvn~~~~~~~l~~~GvdgI~TD~p 237 (247)
T 2otd_A 177 RELTARLGCVSIHLNHKLLDKARVMQLKDAGLRILVYTVNKPQHAAELLRWGVDCICTDAI 237 (247)
T ss_dssp HHHHHHHTCSEEEEEGGGCCHHHHHHHHHTTCEEEEECCCCHHHHHHHHHHTCSEEEESCT
T ss_pred HHHHHHcCCeEEecChHhCCHHHHHHHHHCCCEEEEEccCCHHHHHHHHHcCCCEEEeCCH
Confidence 344566788988887555567899999999999875 477899999999999999987544
|
| >1k68_A Phytochrome response regulator RCPA; phosphorylated aspartate, CHEY homologue, homodimer, (beta/alpha)5, signaling protein; HET: PHD; 1.90A {Tolypothrix SP} SCOP: c.23.1.1 | Back alignment and structure |
|---|
Probab=91.59 E-value=2.1 Score=32.33 Aligned_cols=86 Identities=13% Similarity=0.039 Sum_probs=59.0
Q ss_pred HHHHHhCCCE-EEEecCCHHHHHHHHH--------cCCCEEEEecCCCCcccCCCCchhhhHHHHHHHhCCCCCcEEeec
Q 020013 103 VLEAHSAGVK-VVPQVGSFDEARKAVN--------AGVDAIIVQGREAGGHVIGQDGLISLLPMVVDLIGDRDIPIIAAG 173 (332)
Q Consensus 103 i~~~~~~g~~-v~~~v~s~~~a~~a~~--------~g~D~ivv~G~eaGGh~~~~~~~~~ll~~i~~~~~~~~iPviaaG 173 (332)
.+.++..|.. .+..+.+.+++..... ..+|.|++.-.-. ....+.++..+++.....++|||+-.
T Consensus 19 ~~~L~~~~~~~~v~~~~~~~~a~~~l~~~~~~~~~~~~dlvi~d~~~~------~~~g~~~~~~l~~~~~~~~~pii~ls 92 (140)
T 1k68_A 19 QEALANSTVPHEVVTVRDGMEAMAYLRQEGEYANASRPDLILLXLNLP------KKDGREVLAEIKSDPTLKRIPVVVLS 92 (140)
T ss_dssp HHHHHTCSSCCEEEEECSHHHHHHHHTTCGGGGSCCCCSEEEECSSCS------SSCHHHHHHHHHHSTTGGGSCEEEEE
T ss_pred HHHHHhcCCCceEEEECCHHHHHHHHHcccccccCCCCcEEEEecCCC------cccHHHHHHHHHcCcccccccEEEEe
Confidence 3445556652 4556788888887776 4699999853211 12346777777764210268999888
Q ss_pred CcCCHHHHHHHHHcCcceeee
Q 020013 174 GIVDARGYVAALSLGAQGICL 194 (332)
Q Consensus 174 GI~~~~~v~~al~~GA~gV~~ 194 (332)
+-.+.+.+.+++.+|++++..
T Consensus 93 ~~~~~~~~~~~~~~g~~~~l~ 113 (140)
T 1k68_A 93 TSINEDDIFHSYDLHVNCYIT 113 (140)
T ss_dssp SCCCHHHHHHHHHTTCSEEEE
T ss_pred cCCcHHHHHHHHHhchhheec
Confidence 887889999999999998764
|
| >3dz1_A Dihydrodipicolinate synthase; lysine biosynthesis, pyruvate, TIM barrel, NYSGXRC, PSI2, structural genomics; 1.87A {Rhodopseudomonas palustris} SCOP: c.1.10.0 | Back alignment and structure |
|---|
Probab=91.58 E-value=0.32 Score=44.26 Aligned_cols=120 Identities=8% Similarity=0.086 Sum_probs=64.5
Q ss_pred HHHHHHcCCCEEEEecCCCCcccCCCCchhhhHHHHHHHhCCCCCcEEeecCcCCHHHHH----HHHHcCcceeeecccc
Q 020013 123 ARKAVNAGVDAIIVQGREAGGHVIGQDGLISLLPMVVDLIGDRDIPIIAAGGIVDARGYV----AALSLGAQGICLGTRF 198 (332)
Q Consensus 123 a~~a~~~g~D~ivv~G~eaGGh~~~~~~~~~ll~~i~~~~~~~~iPviaaGGI~~~~~v~----~al~~GA~gV~~GT~f 198 (332)
++...+.|+|+|++-|..+-+.......-..++..+++.. + ++|||+.=|=.+-++.. .+-++|||++++-+.+
T Consensus 35 v~~li~~Gv~Gl~v~GtTGE~~~Lt~~Er~~v~~~~v~~~-g-rvpViaGvg~~~t~~ai~la~~A~~~Gadavlv~~P~ 112 (313)
T 3dz1_A 35 TDFYAEVGCEGVTVLGILGEAPKLDAAEAEAVATRFIKRA-K-SMQVIVGVSAPGFAAMRRLARLSMDAGAAGVMIAPPP 112 (313)
T ss_dssp HHHHHHTTCSEEEESTGGGTGGGSCHHHHHHHHHHHHHHC-T-TSEEEEECCCSSHHHHHHHHHHHHHHTCSEEEECCCT
T ss_pred HHHHHHCCCCEEEeCccCcChhhCCHHHHHHHHHHHHHHc-C-CCcEEEecCCCCHHHHHHHHHHHHHcCCCEEEECCCC
Confidence 4456788999999976643333211122345666677766 3 79998754432444433 3345899999998887
Q ss_pred ccCccCCCCHHHHHHHhcCC-CceEEEEecccCCCCCCceeecChHHHhhh
Q 020013 199 VASEESYAHPEYKRKLVEMD-KTEYTDVFGRARWPGAPHRVLQTPFFSNWK 248 (332)
Q Consensus 199 l~t~Es~~~~~~k~~~~~~~-~t~~t~~~~~~~~~g~~~R~l~n~~~~~~~ 248 (332)
....+...-+-|++.....+ +.- ..+++ .|++.+.-|...++.++.
T Consensus 113 ~~~s~~~l~~~f~~va~a~~~~lP-iilYn---~P~~tg~~l~~~~~~~La 159 (313)
T 3dz1_A 113 SLRTDEQITTYFRQATEAIGDDVP-WVLQD---YPLTLSVVMTPKVIRQIV 159 (313)
T ss_dssp TCCSHHHHHHHHHHHHHHHCTTSC-EEEEE---CHHHHCCCCCHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHhCCCCCc-EEEEe---CccccCcCCCHHHHHHHH
Confidence 43222222222333322222 133 23454 234444456656666554
|
| >2cw6_A Hydroxymethylglutaryl-COA lyase, mitochondrial; HMG-COA lyase, ketogenic enzyme; HET: 3HG; 2.10A {Homo sapiens} PDB: 3mp3_A* 3mp4_A 3mp5_A* | Back alignment and structure |
|---|
Probab=91.56 E-value=5.5 Score=35.61 Aligned_cols=122 Identities=14% Similarity=0.071 Sum_probs=76.9
Q ss_pred CHHHHHHHHhcCCcEEEEccCCCc------------------HHHHHHHHhCCCEEEEec-----------CCHHH----
Q 020013 76 HNENIKAILSEKVAVLQVSWGEYS------------------EELVLEAHSAGVKVVPQV-----------GSFDE---- 122 (332)
Q Consensus 76 ~~~~~~~~~~~~~~~I~~~~g~~~------------------~~~i~~~~~~g~~v~~~v-----------~s~~~---- 122 (332)
....++.+.+.+++.|.+...... .+.++.+++.|.++...+ .+++.
T Consensus 82 ~~~~i~~a~~ag~~~v~i~~~~sd~~~~~~~~~~~~e~l~~~~~~i~~a~~~G~~v~~~l~~~~~~~~~~~~~~~~~~~~ 161 (298)
T 2cw6_A 82 NLKGFEAAVAAGAKEVVIFGAASELFTKKNINCSIEESFQRFDAILKAAQSANISVRGYVSCALGCPYEGKISPAKVAEV 161 (298)
T ss_dssp SHHHHHHHHHTTCSEEEEEEESCHHHHHHHHSCCHHHHHHHHHHHHHHHHHTTCEEEEEEETTTCBTTTBSCCHHHHHHH
T ss_pred CHHhHHHHHHCCCCEEEEEecCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHCCCeEEEEEEEEeeCCcCCCCCHHHHHHH
Confidence 466788999999999887533211 124566778899875332 24554
Q ss_pred HHHHHHcCCCEEEEecCCCCcccCCCCchhhhHHHHHHHhCCCCCcEEee----cCcCCHHHHHHHHHcCcceeeecccc
Q 020013 123 ARKAVNAGVDAIIVQGREAGGHVIGQDGLISLLPMVVDLIGDRDIPIIAA----GGIVDARGYVAALSLGAQGICLGTRF 198 (332)
Q Consensus 123 a~~a~~~g~D~ivv~G~eaGGh~~~~~~~~~ll~~i~~~~~~~~iPviaa----GGI~~~~~v~~al~~GA~gV~~GT~f 198 (332)
++.+.+.|+|.|.+.-. -|.. .+.....++..+++.++ ++|+-.- -|.+ -.+..+++.+||+-|.. .+
T Consensus 162 ~~~~~~~Ga~~i~l~DT--~G~~-~P~~~~~lv~~l~~~~~--~~~i~~H~Hn~~Gla-~An~laA~~aGa~~vd~--tv 233 (298)
T 2cw6_A 162 TKKFYSMGCYEISLGDT--IGVG-TPGIMKDMLSAVMQEVP--LAALAVHCHDTYGQA-LANTLMALQMGVSVVDS--SV 233 (298)
T ss_dssp HHHHHHTTCSEEEEEET--TSCC-CHHHHHHHHHHHHHHSC--GGGEEEEEBCTTSCH-HHHHHHHHHTTCCEEEE--BT
T ss_pred HHHHHHcCCCEEEecCC--CCCc-CHHHHHHHHHHHHHhCC--CCeEEEEECCCCchH-HHHHHHHHHhCCCEEEe--ec
Confidence 44567899999988533 2222 23345677888877663 4666543 4663 46777888999987764 34
Q ss_pred ccCccCC
Q 020013 199 VASEESY 205 (332)
Q Consensus 199 l~t~Es~ 205 (332)
..--|||
T Consensus 234 ~GlG~cp 240 (298)
T 2cw6_A 234 AGLGGCP 240 (298)
T ss_dssp TSCCCCT
T ss_pred ccccCCC
Confidence 4444543
|
| >4dpp_A DHDPS 2, dihydrodipicolinate synthase 2, chloroplastic; amino-acid biosynthesis, (S)-lysine biosynthesis VIA DAP PAT (beta/alpha)8-barrel; 2.00A {Arabidopsis thaliana} PDB: 4dpq_A* 3tuu_A* | Back alignment and structure |
|---|
Probab=91.56 E-value=0.73 Score=42.77 Aligned_cols=78 Identities=18% Similarity=0.336 Sum_probs=48.4
Q ss_pred HHHHHHcCCCEEEEecCCCCcccCCCCchhhhHHHHHHHhCCCCCcEEe-ecCcCCHHHHH---HHHHcCcceeeecccc
Q 020013 123 ARKAVNAGVDAIIVQGREAGGHVIGQDGLISLLPMVVDLIGDRDIPIIA-AGGIVDARGYV---AALSLGAQGICLGTRF 198 (332)
Q Consensus 123 a~~a~~~g~D~ivv~G~eaGGh~~~~~~~~~ll~~i~~~~~~~~iPvia-aGGI~~~~~v~---~al~~GA~gV~~GT~f 198 (332)
+....+.|+|+|++-|..+-+.......-..++..+++...+ ++|||+ .|+.++.+.+. .+-++|||++++-+.+
T Consensus 86 v~~li~~Gv~Gl~v~GTTGE~~~Ls~eEr~~vi~~~ve~~~g-rvpViaGvg~~st~eai~la~~A~~~Gadavlvv~Py 164 (360)
T 4dpp_A 86 VNIQIQNGAEGVIVGGTTGEGQLMSWDEHIMLIGHTVNCFGG-SIKVIGNTGSNSTREAIHATEQGFAVGMHAALHINPY 164 (360)
T ss_dssp HHHHHHTTCCEEEESSTTTTGGGSCHHHHHHHHHHHHHHHTT-TSEEEEECCCSSHHHHHHHHHHHHHTTCSEEEEECCC
T ss_pred HHHHHHcCCCEEEecccccChhhCCHHHHHHHHHHHHHHhCC-CCeEEEecCCCCHHHHHHHHHHHHHcCCCEEEEcCCC
Confidence 345668899999997664333321111224556666666643 689987 44454433332 3345899999999887
Q ss_pred ccC
Q 020013 199 VAS 201 (332)
Q Consensus 199 l~t 201 (332)
...
T Consensus 165 Y~k 167 (360)
T 4dpp_A 165 YGK 167 (360)
T ss_dssp SSC
T ss_pred CCC
Confidence 754
|
| >2rjn_A Response regulator receiver:metal-dependent phosphohydrolase, HD subdomain; structural genomics, oceanospirillum SP. MED92; 2.10A {Neptuniibacter caesariensis} | Back alignment and structure |
|---|
Probab=91.52 E-value=2.6 Score=32.75 Aligned_cols=82 Identities=22% Similarity=0.225 Sum_probs=58.2
Q ss_pred HHHHhCCCEEEEecCCHHHHHHHHH-cCCCEEEEecCCCCcccCCCCchhhhHHHHHHHhCCCCCcEEeecCcCCHHHHH
Q 020013 104 LEAHSAGVKVVPQVGSFDEARKAVN-AGVDAIIVQGREAGGHVIGQDGLISLLPMVVDLIGDRDIPIIAAGGIVDARGYV 182 (332)
Q Consensus 104 ~~~~~~g~~v~~~v~s~~~a~~a~~-~g~D~ivv~G~eaGGh~~~~~~~~~ll~~i~~~~~~~~iPviaaGGI~~~~~v~ 182 (332)
+.+...|..+. .+.+.+++..... ..+|.|++.-.-.+ ...+.++..+++..+ .+|||+-.+-.+.+...
T Consensus 25 ~~L~~~g~~v~-~~~~~~~a~~~l~~~~~dlvi~d~~l~~------~~g~~~~~~l~~~~~--~~~ii~ls~~~~~~~~~ 95 (154)
T 2rjn_A 25 RLIKRLGCNII-TFTSPLDALEALKGTSVQLVISDMRMPE------MGGEVFLEQVAKSYP--DIERVVISGYADAQATI 95 (154)
T ss_dssp HHHHTTTCEEE-EESCHHHHHHHHTTSCCSEEEEESSCSS------SCHHHHHHHHHHHCT--TSEEEEEECGGGHHHHH
T ss_pred HHHHHcCCeEE-EeCCHHHHHHHHhcCCCCEEEEecCCCC------CCHHHHHHHHHHhCC--CCcEEEEecCCCHHHHH
Confidence 34555787766 6788888877654 46899998532111 233677778776543 68999888887888899
Q ss_pred HHHHcC-cceeee
Q 020013 183 AALSLG-AQGICL 194 (332)
Q Consensus 183 ~al~~G-A~gV~~ 194 (332)
.++..| ++++..
T Consensus 96 ~~~~~g~~~~~l~ 108 (154)
T 2rjn_A 96 DAVNRGKISRFLL 108 (154)
T ss_dssp HHHHTTCCSEEEE
T ss_pred HHHhccchheeee
Confidence 999998 887764
|
| >1y0e_A Putative N-acetylmannosamine-6-phosphate 2-epimer; mannac-6-P epimerase, NANE, structural genomics, protein STR initiative, PSI; 1.95A {Staphylococcus aureus subsp} SCOP: c.1.2.5 | Back alignment and structure |
|---|
Probab=91.45 E-value=5.1 Score=33.79 Aligned_cols=110 Identities=14% Similarity=0.142 Sum_probs=71.1
Q ss_pred HHHHHHHhcCCcEEEEccCCCcHHHHHHHHh-CCCEEEEe-----------c-CCHHHHHHHHHcCCCEEEEecCCCCcc
Q 020013 78 ENIKAILSEKVAVLQVSWGEYSEELVLEAHS-AGVKVVPQ-----------V-GSFDEARKAVNAGVDAIIVQGREAGGH 144 (332)
Q Consensus 78 ~~~~~~~~~~~~~I~~~~g~~~~~~i~~~~~-~g~~v~~~-----------v-~s~~~a~~a~~~g~D~ivv~G~eaGGh 144 (332)
+..+.+.+.|++.++.. ..+.++.+++ .+++++.. + .+.+++..+.+.|+|.|.+... +- +
T Consensus 27 ~~a~~~~~~Ga~~i~~~----~~~~i~~i~~~~~~pv~~~~~~~~~~~~~~i~~~~~~i~~~~~~Gad~v~l~~~-~~-~ 100 (223)
T 1y0e_A 27 KMALAAYEGGAVGIRAN----TKEDILAIKETVDLPVIGIVKRDYDHSDVFITATSKEVDELIESQCEVIALDAT-LQ-Q 100 (223)
T ss_dssp HHHHHHHHHTCSEEEEE----SHHHHHHHHHHCCSCEEEECBCCCTTCCCCBSCSHHHHHHHHHHTCSEEEEECS-CS-C
T ss_pred HHHHHHHHCCCeeeccC----CHHHHHHHHHhcCCCEEeeeccCCCccccccCCcHHHHHHHHhCCCCEEEEeee-cc-c
Confidence 34455667788888764 2345666654 45666421 1 3567788889999999988432 11 0
Q ss_pred cCCC-CchhhhHHHHHHHhCCCCCcEEeecCcCCHHHHHHHHHcCcceeeeccccc
Q 020013 145 VIGQ-DGLISLLPMVVDLIGDRDIPIIAAGGIVDARGYVAALSLGAQGICLGTRFV 199 (332)
Q Consensus 145 ~~~~-~~~~~ll~~i~~~~~~~~iPviaaGGI~~~~~v~~al~~GA~gV~~GT~fl 199 (332)
.+ .....++..+++.++ +.+++. ++.+.+++.++..+|+|.+.++....
T Consensus 101 --~p~~~~~~~i~~~~~~~~--~~~v~~--~~~t~~e~~~~~~~G~d~i~~~~~g~ 150 (223)
T 1y0e_A 101 --RPKETLDELVSYIRTHAP--NVEIMA--DIATVEEAKNAARLGFDYIGTTLHGY 150 (223)
T ss_dssp --CSSSCHHHHHHHHHHHCT--TSEEEE--ECSSHHHHHHHHHTTCSEEECTTTTS
T ss_pred --CcccCHHHHHHHHHHhCC--CceEEe--cCCCHHHHHHHHHcCCCEEEeCCCcC
Confidence 11 234567777777653 466654 66789999999999999987765433
|
| >3heb_A Response regulator receiver domain protein (CHEY); NYSGXRC, PSI-II, respose regulator, structure initiative, structural genomics; 2.40A {Rhodospirillum rubrum} SCOP: c.23.1.0 | Back alignment and structure |
|---|
Probab=91.41 E-value=1.8 Score=33.65 Aligned_cols=85 Identities=16% Similarity=0.117 Sum_probs=58.0
Q ss_pred HHHHhCCCE-EEEecCCHHHHHHHHH----------cCCCEEEEecCCCCcccCCCCchhhhHHHHHHHhCCCCCcEEee
Q 020013 104 LEAHSAGVK-VVPQVGSFDEARKAVN----------AGVDAIIVQGREAGGHVIGQDGLISLLPMVVDLIGDRDIPIIAA 172 (332)
Q Consensus 104 ~~~~~~g~~-v~~~v~s~~~a~~a~~----------~g~D~ivv~G~eaGGh~~~~~~~~~ll~~i~~~~~~~~iPviaa 172 (332)
+.+++.|.. .+..+.+.+++....+ ..+|.|++.-.-. ....+.++..+++.....++|||+-
T Consensus 22 ~~L~~~g~~~~v~~~~~~~~al~~l~~~~~~~~~~~~~~dliilD~~l~------~~~g~~~~~~lr~~~~~~~~pii~~ 95 (152)
T 3heb_A 22 KNIRRAGVNNEIIAFTDGTSALNYLFGDDKSGRVSAGRAQLVLLDLNLP------DMTGIDILKLVKENPHTRRSPVVIL 95 (152)
T ss_dssp HHHHHTTCCCCEEEESSHHHHHHHHHCTTSSSGGGTTCBEEEEECSBCS------SSBHHHHHHHHHHSTTTTTSCEEEE
T ss_pred HHHHhCCCcceEEEeCCHHHHHHHHhccccccccccCCCCEEEEeCCCC------CCcHHHHHHHHHhcccccCCCEEEE
Confidence 445566653 3446778888887763 5689998853211 1234678888876211126899988
Q ss_pred cCcCCHHHHHHHHHcCcceeee
Q 020013 173 GGIVDARGYVAALSLGAQGICL 194 (332)
Q Consensus 173 GGI~~~~~v~~al~~GA~gV~~ 194 (332)
.+-.+.+.+.+++.+||+++..
T Consensus 96 t~~~~~~~~~~~~~~g~~~~l~ 117 (152)
T 3heb_A 96 TTTDDQREIQRCYDLGANVYIT 117 (152)
T ss_dssp ESCCCHHHHHHHHHTTCSEEEE
T ss_pred ecCCCHHHHHHHHHCCCcEEEe
Confidence 8888889999999999998763
|
| >3mm4_A Histidine kinase homolog; receiver domain, CKI1, cytokinin signaling, ROS fold, CHEY-like, transferase; 2.00A {Arabidopsis thaliana} PDB: 3mmn_A | Back alignment and structure |
|---|
Probab=91.41 E-value=1.9 Score=35.95 Aligned_cols=85 Identities=19% Similarity=0.118 Sum_probs=58.5
Q ss_pred HHHHhCCCEEEEecCCHHHHHHHHHc--------------CCCEEEEecCCCCcccCCCCchhhhHHHHHHHhC--CCCC
Q 020013 104 LEAHSAGVKVVPQVGSFDEARKAVNA--------------GVDAIIVQGREAGGHVIGQDGLISLLPMVVDLIG--DRDI 167 (332)
Q Consensus 104 ~~~~~~g~~v~~~v~s~~~a~~a~~~--------------g~D~ivv~G~eaGGh~~~~~~~~~ll~~i~~~~~--~~~i 167 (332)
+.+++.|...+..+.+.++|...... .+|.|+++=.-. ....+.++.++++... ..++
T Consensus 79 ~~L~~~g~~~v~~a~~~~eal~~l~~~~~~~~~~~~~~~~~~dlillD~~lp------~~~G~el~~~lr~~~~~~~~~~ 152 (206)
T 3mm4_A 79 GKLKKMGVSEVEQCDSGKEALRLVTEGLTQREEQGSVDKLPFDYIFMDCQMP------EMDGYEATREIRKVEKSYGVRT 152 (206)
T ss_dssp HHHHHTTCSEEEEESSHHHHHHHHHHHHHHHHHHTCSSCCSCSEEEEESCCS------SSCHHHHHHHHHHHHHTTTCCC
T ss_pred HHHHHcCCCeeeeeCCHHHHHHHHHhhcccccccccccCCCCCEEEEcCCCC------CCCHHHHHHHHHhhhhhcCCCC
Confidence 44566777455667888888776543 699999853211 1234677777776410 1268
Q ss_pred cEEeecCcC-CHHHHHHHHHcCcceeee
Q 020013 168 PIIAAGGIV-DARGYVAALSLGAQGICL 194 (332)
Q Consensus 168 PviaaGGI~-~~~~v~~al~~GA~gV~~ 194 (332)
|||+..+-. +.+.+.+++.+|+++++.
T Consensus 153 piI~ls~~~~~~~~~~~~~~~Ga~~~l~ 180 (206)
T 3mm4_A 153 PIIAVSGHDPGSEEARETIQAGMDAFLD 180 (206)
T ss_dssp CEEEEESSCCCHHHHHHHHHHTCSEEEE
T ss_pred cEEEEECCCCcHHHHHHHHhCCCCEEEc
Confidence 999888876 778888999999998774
|
| >3s5o_A 4-hydroxy-2-oxoglutarate aldolase, mitochondrial; beta barrel, schiff base, hydroxyproline metabolis; HET: KPI; 1.97A {Homo sapiens} SCOP: c.1.10.0 PDB: 3s5n_A | Back alignment and structure |
|---|
Probab=91.40 E-value=0.44 Score=43.25 Aligned_cols=121 Identities=12% Similarity=0.127 Sum_probs=65.3
Q ss_pred HHHHHHcCCCEEEEecCCCCcccCCCCchhhhHHHHHHHhCCCCCcEEeecC-cCCHHHH---HHHHHcCcceeeecccc
Q 020013 123 ARKAVNAGVDAIIVQGREAGGHVIGQDGLISLLPMVVDLIGDRDIPIIAAGG-IVDARGY---VAALSLGAQGICLGTRF 198 (332)
Q Consensus 123 a~~a~~~g~D~ivv~G~eaGGh~~~~~~~~~ll~~i~~~~~~~~iPviaaGG-I~~~~~v---~~al~~GA~gV~~GT~f 198 (332)
+....+.|+|+|++-|..+-++......-..++..+++.... ++|||+.-| .++.+.+ ..+-++|||++++-+.+
T Consensus 41 v~~li~~Gv~Gl~v~GtTGE~~~Ls~~Er~~v~~~~~~~~~g-r~pviaGvg~~~t~~ai~la~~A~~~Gadavlv~~P~ 119 (307)
T 3s5o_A 41 LHKLGTFPFRGFVVQGSNGEFPFLTSSERLEVVSRVRQAMPK-NRLLLAGSGCESTQATVEMTVSMAQVGADAAMVVTPC 119 (307)
T ss_dssp HHHHTTSCCSEEEESSGGGTGGGSCHHHHHHHHHHHHHTSCT-TSEEEEECCCSSHHHHHHHHHHHHHTTCSEEEEECCC
T ss_pred HHHHHHcCCCEEEECccccchhhCCHHHHHHHHHHHHHHcCC-CCcEEEecCCCCHHHHHHHHHHHHHcCCCEEEEcCCC
Confidence 445567899999997664333321212234556666666543 689887444 4443333 24446899999999887
Q ss_pred ccC---ccCCCCHHHHHHHhcCCCceEEEEecccCCCCCCceeecChHHHhhhc
Q 020013 199 VAS---EESYAHPEYKRKLVEMDKTEYTDVFGRARWPGAPHRVLQTPFFSNWKN 249 (332)
Q Consensus 199 l~t---~Es~~~~~~k~~~~~~~~t~~t~~~~~~~~~g~~~R~l~n~~~~~~~~ 249 (332)
... .+...-+.|+ .|.++.+.- ..+++. |++.+.-+....+.++.+
T Consensus 120 y~~~~~s~~~l~~~f~-~ia~a~~lP-iilYn~---P~~tg~~l~~~~~~~La~ 168 (307)
T 3s5o_A 120 YYRGRMSSAALIHHYT-KVADLSPIP-VVLYSV---PANTGLDLPVDAVVTLSQ 168 (307)
T ss_dssp TTGGGCCHHHHHHHHH-HHHHHCSSC-EEEEEC---HHHHSCCCCHHHHHHHHT
T ss_pred cCCCCCCHHHHHHHHH-HHHhhcCCC-EEEEeC---CcccCCCCCHHHHHHHhc
Confidence 753 2222323333 344444433 234431 333334455555555443
|
| >1jbe_A Chemotaxis protein CHEY; signaling protein; 1.08A {Escherichia coli} SCOP: c.23.1.1 PDB: 3chy_A 1a0o_A 1cey_A 1bdj_A 1eay_A 1f4v_A 1ffg_A 1ffs_A 1ffw_A 1fqw_A 2b1j_A 1chn_A 1djm_A 1kmi_Y* 1d4z_A 3olx_A 3olw_A 1cye_A 2che_A 2chf_A ... | Back alignment and structure |
|---|
Probab=91.40 E-value=2.9 Score=31.13 Aligned_cols=85 Identities=15% Similarity=0.159 Sum_probs=56.4
Q ss_pred HHHHhCCCEEEEecCCHHHHHHHHH-cCCCEEEEecCCCCcccCCCCchhhhHHHHHHHhCCCCCcEEeecCcCCHHHHH
Q 020013 104 LEAHSAGVKVVPQVGSFDEARKAVN-AGVDAIIVQGREAGGHVIGQDGLISLLPMVVDLIGDRDIPIIAAGGIVDARGYV 182 (332)
Q Consensus 104 ~~~~~~g~~v~~~v~s~~~a~~a~~-~g~D~ivv~G~eaGGh~~~~~~~~~ll~~i~~~~~~~~iPviaaGGI~~~~~v~ 182 (332)
..++..|...+..+.+.+++..... ..+|.+++.-.-. ....+.++..+++......+|++.-.+-.+.+.+.
T Consensus 22 ~~l~~~~~~~v~~~~~~~~a~~~~~~~~~dlvi~D~~l~------~~~g~~l~~~l~~~~~~~~~~ii~~s~~~~~~~~~ 95 (128)
T 1jbe_A 22 NLLKELGFNNVEEAEDGVDALNKLQAGGYGFVISDWNMP------NMDGLELLKTIRAXXAMSALPVLMVTAEAKKENII 95 (128)
T ss_dssp HHHHHTTCCCEEEESSHHHHHHHHTTCCCCEEEEESCCS------SSCHHHHHHHHHC--CCTTCCEEEEESSCCHHHHH
T ss_pred HHHHHcCCcEEEeeCCHHHHHHHHHhcCCCEEEEeCCCC------CCCHHHHHHHHHhhcccCCCcEEEEecCccHHHHH
Confidence 3445567645556778877776554 4689998853211 11336677777753211268999888887889999
Q ss_pred HHHHcCcceeee
Q 020013 183 AALSLGAQGICL 194 (332)
Q Consensus 183 ~al~~GA~gV~~ 194 (332)
+++..||+++..
T Consensus 96 ~~~~~ga~~~l~ 107 (128)
T 1jbe_A 96 AAAQAGASGYVV 107 (128)
T ss_dssp HHHHTTCSEEEE
T ss_pred HHHHhCcCceee
Confidence 999999998753
|
| >3ngj_A Deoxyribose-phosphate aldolase; lyase, structural genomics, structural genomics center for infectious disease, ssgcid; 1.70A {Entamoeba histolytica} | Back alignment and structure |
|---|
Probab=91.39 E-value=1 Score=39.25 Aligned_cols=78 Identities=21% Similarity=0.172 Sum_probs=52.0
Q ss_pred HHHHHHHHHcCCCEEEEe-cCCCCcccCCC-CchhhhHHHHHHHhCCCCCcEEeecCcCCHHHHHHH----HHcCcceee
Q 020013 120 FDEARKAVNAGVDAIIVQ-GREAGGHVIGQ-DGLISLLPMVVDLIGDRDIPIIAAGGIVDARGYVAA----LSLGAQGIC 193 (332)
Q Consensus 120 ~~~a~~a~~~g~D~ivv~-G~eaGGh~~~~-~~~~~ll~~i~~~~~~~~iPviaaGGI~~~~~v~~a----l~~GA~gV~ 193 (332)
+.|++.|.+.|+|-|-+. +. |--..+. .....-+.++++.....-++||..-|.-+.+.+..+ ..+|||.|-
T Consensus 98 v~Ea~~Ai~~GAdEIDmViNi--g~lk~g~~~~v~~eI~~v~~a~~~~~lKVIlEt~~Lt~eei~~a~~ia~~aGADfVK 175 (239)
T 3ngj_A 98 AYETKVAVEQGAEEVDMVINI--GMVKAKKYDDVEKDVKAVVDASGKALTKVIIECCYLTNEEKVEVCKRCVAAGAEYVK 175 (239)
T ss_dssp HHHHHHHHHTTCSEEEEECCH--HHHHTTCHHHHHHHHHHHHHHHTTSEEEEECCGGGSCHHHHHHHHHHHHHHTCSEEE
T ss_pred HHHHHHHHHcCCCEEEEEeeh--HHhccccHHHHHHHHHHHHHHhcCCceEEEEecCCCCHHHHHHHHHHHHHHCcCEEE
Confidence 357888999999988652 22 1000011 123455667777664223678877777788888877 678999999
Q ss_pred eccccc
Q 020013 194 LGTRFV 199 (332)
Q Consensus 194 ~GT~fl 199 (332)
..|.|-
T Consensus 176 TSTGf~ 181 (239)
T 3ngj_A 176 TSTGFG 181 (239)
T ss_dssp CCCSSS
T ss_pred CCCCCC
Confidence 999985
|
| >2i1o_A Nicotinate phosphoribosyltransferase; ZIN ION, zinc finger M structural genomics, PSI, protein structure initiative; 2.40A {Thermoplasma acidophilum} PDB: 1ytd_A* 1yte_A* 1ytk_A | Back alignment and structure |
|---|
Probab=91.37 E-value=0.65 Score=43.72 Aligned_cols=83 Identities=25% Similarity=0.268 Sum_probs=56.9
Q ss_pred CEEEEecCC----HHHHHHHHHc--CCCEEEEecCCCCcccCCCCchhhhHHHHHHHh---CCCCCcEEeecCcCCHHHH
Q 020013 111 VKVVPQVGS----FDEARKAVNA--GVDAIIVQGREAGGHVIGQDGLISLLPMVVDLI---GDRDIPIIAAGGIVDARGY 181 (332)
Q Consensus 111 ~~v~~~v~s----~~~a~~a~~~--g~D~ivv~G~eaGGh~~~~~~~~~ll~~i~~~~---~~~~iPviaaGGI~~~~~v 181 (332)
.++...+.| .+++.++.+. ++|+|-++.+.. ..+ ....++.++++.+ ...++.|+++||| |.+++
T Consensus 211 ~~~~vlvDT~d~~~~~al~~a~~l~~~d~IrlDs~~~---~~g--d~~~~v~~v~~~ld~~G~~~~~I~aSggl-~~~~i 284 (398)
T 2i1o_A 211 QKSVLLIDTYMDEKFAAIKIAEMFDKVDYIRLDTPSS---RRG--NFEALIREVRWELALRGRSDIKIMVSGGL-DENTV 284 (398)
T ss_dssp SCCEEECCSSSCHHHHHHHHHTTCSCCCEEEECCCGG---GCS--CHHHHHHHHHHHHHHTTCTTSEEEEESSC-CHHHH
T ss_pred CCEEEEEcCchHHHHHHHHHHHhhcCCcEEEeCCCCC---Ccc--cHHHHHHHHHHHHHhCCCCceEEEEeCCC-CHHHH
Confidence 445666655 4566655555 999999976521 001 2234455554432 1125789999999 99999
Q ss_pred HHHHHcCcceeeeccccc
Q 020013 182 VAALSLGAQGICLGTRFV 199 (332)
Q Consensus 182 ~~al~~GA~gV~~GT~fl 199 (332)
.++.+.|+|.+-+||.+.
T Consensus 285 ~~l~~~GvD~~gvGt~l~ 302 (398)
T 2i1o_A 285 KKLREAGAEAFGVGTSIS 302 (398)
T ss_dssp HHHHHTTCCEEEECHHHH
T ss_pred HHHHHcCCCEEEeCcccC
Confidence 999999999999999876
|
| >3r0j_A Possible two component system response transcript positive regulator PHOP; beta-alpha fold, winged helix-turn-helix; 2.50A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=91.37 E-value=2.1 Score=36.68 Aligned_cols=82 Identities=17% Similarity=0.125 Sum_probs=60.0
Q ss_pred HHHHhCCCEEEEecCCHHHHHHHH-HcCCCEEEEecCCCCcccCCCCchhhhHHHHHHHhCCCCCcEEeecCcCCHHHHH
Q 020013 104 LEAHSAGVKVVPQVGSFDEARKAV-NAGVDAIIVQGREAGGHVIGQDGLISLLPMVVDLIGDRDIPIIAAGGIVDARGYV 182 (332)
Q Consensus 104 ~~~~~~g~~v~~~v~s~~~a~~a~-~~g~D~ivv~G~eaGGh~~~~~~~~~ll~~i~~~~~~~~iPviaaGGI~~~~~v~ 182 (332)
..+...|..+. .+.+.+++.... ...+|.|+++-.-.+ ...+.++.++++... ++|||+-.+-.+.+.+.
T Consensus 41 ~~L~~~g~~v~-~~~~~~~al~~~~~~~~dlvllD~~lp~------~~g~~~~~~lr~~~~--~~~ii~lt~~~~~~~~~ 111 (250)
T 3r0j_A 41 VSLKFQGFEVY-TATNGAQALDRARETRPDAVILDVXMPG------MDGFGVLRRLRADGI--DAPALFLTARDSLQDKI 111 (250)
T ss_dssp HHHHHTTCEEE-EESSHHHHHHHHHHHCCSEEEEESCCSS------SCHHHHHHHHHHTTC--CCCEEEEECSTTHHHHH
T ss_pred HHHHHCCCEEE-EECCHHHHHHHHHhCCCCEEEEeCCCCC------CCHHHHHHHHHhcCC--CCCEEEEECCCCHHHHH
Confidence 34556788776 677888877654 457999999633111 234678888877542 68999988888999999
Q ss_pred HHHHcCcceeee
Q 020013 183 AALSLGAQGICL 194 (332)
Q Consensus 183 ~al~~GA~gV~~ 194 (332)
+++.+||++...
T Consensus 112 ~~~~~Ga~~yl~ 123 (250)
T 3r0j_A 112 AGLTLGGDDYVT 123 (250)
T ss_dssp HHHTSTTCEEEE
T ss_pred HHHHcCCcEEEe
Confidence 999999998764
|
| >2qsj_A DNA-binding response regulator, LUXR family; structural genomics, PSI-2, protein structure initiative; 2.10A {Silicibacter pomeroyi dss-3} | Back alignment and structure |
|---|
Probab=91.36 E-value=1.4 Score=34.40 Aligned_cols=82 Identities=20% Similarity=0.101 Sum_probs=53.0
Q ss_pred HHHHhC-CCEEEEecCCHHHHHHHHH--cCCCEEEEecCCCCcccCCCCchhhhHHHHHHHhCCCCCcEEeecCcCCHHH
Q 020013 104 LEAHSA-GVKVVPQVGSFDEARKAVN--AGVDAIIVQGREAGGHVIGQDGLISLLPMVVDLIGDRDIPIIAAGGIVDARG 180 (332)
Q Consensus 104 ~~~~~~-g~~v~~~v~s~~~a~~a~~--~g~D~ivv~G~eaGGh~~~~~~~~~ll~~i~~~~~~~~iPviaaGGI~~~~~ 180 (332)
..+++. |...+..+.+.+++..... ..+|.|++.-.-.+ ...+.++..+++..+ ++|||+-.+-.+.+.
T Consensus 21 ~~L~~~~g~~~v~~~~~~~~a~~~l~~~~~~dlvi~d~~l~~------~~g~~~~~~l~~~~~--~~~ii~ls~~~~~~~ 92 (154)
T 2qsj_A 21 NLLEGAFSGMRVEGAETVSDALAFLEADNTVDLILLDVNLPD------AEAIDGLVRLKRFDP--SNAVALISGETDHEL 92 (154)
T ss_dssp HHHHHHCTTEEEEEESSHHHHHHHHHTTCCCSEEEECC------------CHHHHHHHHHHCT--TSEEEEC-----CHH
T ss_pred HHHHhCCCceEEEEecCHHHHHHHHhccCCCCEEEEeCCCCC------CchHHHHHHHHHhCC--CCeEEEEeCCCCHHH
Confidence 344444 7766777888888887665 46899998432111 123567777776543 689999888878888
Q ss_pred HHHHHHcCcceee
Q 020013 181 YVAALSLGAQGIC 193 (332)
Q Consensus 181 v~~al~~GA~gV~ 193 (332)
+..++..|++++.
T Consensus 93 ~~~~~~~g~~~~l 105 (154)
T 2qsj_A 93 IRAALEAGADGFI 105 (154)
T ss_dssp HHHHHHTTCCBBC
T ss_pred HHHHHHccCCEEE
Confidence 8999999999875
|
| >4dad_A Putative pilus assembly-related protein; response regulator receiver domain, CHEY-related protein, ST genomics; 2.50A {Burkholderia pseudomallei} PDB: 4dn6_A | Back alignment and structure |
|---|
Probab=91.36 E-value=1 Score=34.81 Aligned_cols=83 Identities=12% Similarity=0.204 Sum_probs=56.0
Q ss_pred HHHHhCC-CEEEEecCCHHHHHHHHH--cCCCEEEEecCCCCcccCCCCchhhhHHHHHHHhCCCCCcEEeecCcCCHHH
Q 020013 104 LEAHSAG-VKVVPQVGSFDEARKAVN--AGVDAIIVQGREAGGHVIGQDGLISLLPMVVDLIGDRDIPIIAAGGIVDARG 180 (332)
Q Consensus 104 ~~~~~~g-~~v~~~v~s~~~a~~a~~--~g~D~ivv~G~eaGGh~~~~~~~~~ll~~i~~~~~~~~iPviaaGGI~~~~~ 180 (332)
+.+...| ..+....+..+.+....+ ..+|.|++.-.-. ....+.++..+++... ++|||+-.+-.+.+.
T Consensus 38 ~~L~~~g~~~v~~~~~~~~~~~~~~~~~~~~dlvi~D~~l~------~~~g~~~~~~l~~~~~--~~~ii~lt~~~~~~~ 109 (146)
T 4dad_A 38 RLVGDAGRYRVTRTVGRAAQIVQRTDGLDAFDILMIDGAAL------DTAELAAIEKLSRLHP--GLTCLLVTTDASSQT 109 (146)
T ss_dssp HHHHHHCSCEEEEECCCHHHHTTCHHHHTTCSEEEEECTTC------CHHHHHHHHHHHHHCT--TCEEEEEESCCCHHH
T ss_pred HHHhhCCCeEEEEeCCHHHHHHHHHhcCCCCCEEEEeCCCC------CccHHHHHHHHHHhCC--CCcEEEEeCCCCHHH
Confidence 3445556 777654444444444444 6799999853211 1234677778777543 689999999889999
Q ss_pred HHHHHHcCcceeee
Q 020013 181 YVAALSLGAQGICL 194 (332)
Q Consensus 181 v~~al~~GA~gV~~ 194 (332)
+.+++.+||+++..
T Consensus 110 ~~~~~~~ga~~~l~ 123 (146)
T 4dad_A 110 LLDAMRAGVRDVLR 123 (146)
T ss_dssp HHHHHTTTEEEEEE
T ss_pred HHHHHHhCCceeEc
Confidence 99999999998753
|
| >1qkk_A DCTD, C4-dicarboxylate transport transcriptional regulatory protein; receiver domain, 2-component signal transduction; 1.7A {Sinorhizobium meliloti} SCOP: c.23.1.1 PDB: 1l5z_A 1l5y_A | Back alignment and structure |
|---|
Probab=91.34 E-value=1.7 Score=33.94 Aligned_cols=83 Identities=24% Similarity=0.206 Sum_probs=58.9
Q ss_pred HHHHHhCCCEEEEecCCHHHHHHHHH-cCCCEEEEecCCCCcccCCCCchhhhHHHHHHHhCCCCCcEEeecCcCCHHHH
Q 020013 103 VLEAHSAGVKVVPQVGSFDEARKAVN-AGVDAIIVQGREAGGHVIGQDGLISLLPMVVDLIGDRDIPIIAAGGIVDARGY 181 (332)
Q Consensus 103 i~~~~~~g~~v~~~v~s~~~a~~a~~-~g~D~ivv~G~eaGGh~~~~~~~~~ll~~i~~~~~~~~iPviaaGGI~~~~~v 181 (332)
.+.+...|..+. .+.+.+++..... ..+|.|++.-.-.+ ...+.++..+++..+ ++|||+-.+-.+.+.+
T Consensus 20 ~~~L~~~g~~v~-~~~~~~~a~~~l~~~~~dliild~~l~~------~~g~~~~~~l~~~~~--~~pii~ls~~~~~~~~ 90 (155)
T 1qkk_A 20 QQTLELAGFTVS-SFASATEALAGLSADFAGIVISDIRMPG------MDGLALFRKILALDP--DLPMILVTGHGDIPMA 90 (155)
T ss_dssp HHHHHHTTCEEE-EESCHHHHHHTCCTTCCSEEEEESCCSS------SCHHHHHHHHHHHCT--TSCEEEEECGGGHHHH
T ss_pred HHHHHHcCcEEE-EECCHHHHHHHHHhCCCCEEEEeCCCCC------CCHHHHHHHHHhhCC--CCCEEEEECCCChHHH
Confidence 345566788765 6778888776543 46899998533111 233677777776543 6899998888888889
Q ss_pred HHHHHcCcceeee
Q 020013 182 VAALSLGAQGICL 194 (332)
Q Consensus 182 ~~al~~GA~gV~~ 194 (332)
..++.+|++++..
T Consensus 91 ~~~~~~g~~~~l~ 103 (155)
T 1qkk_A 91 VQAIQDGAYDFIA 103 (155)
T ss_dssp HHHHHTTCCEEEE
T ss_pred HHHHhcCCCeEEe
Confidence 9999999998764
|
| >1tv5_A Dhodehase, dihydroorotate dehydrogenase homolog, mitochondri, dihydroorotate; alpha-beta barrel, TIM barrel, oxidoreductase; HET: A26 FMN ORO N8E; 2.40A {Plasmodium falciparum} SCOP: c.1.4.1 | Back alignment and structure |
|---|
Probab=91.33 E-value=1.5 Score=41.86 Aligned_cols=74 Identities=15% Similarity=0.177 Sum_probs=51.2
Q ss_pred CCc-EEEEeecCCCCH---HHHHHHHhcCCcEEEEccCCC-----------------------cHHHHHHHHhC---CCE
Q 020013 63 ERP-FGVGVVLAFPHN---ENIKAILSEKVAVLQVSWGEY-----------------------SEELVLEAHSA---GVK 112 (332)
Q Consensus 63 ~~p-~gvnl~~~~~~~---~~~~~~~~~~~~~I~~~~g~~-----------------------~~~~i~~~~~~---g~~ 112 (332)
+.| +.+.+-.....+ +..+.+.+.|+|.|.++.... ..++++.+++. .++
T Consensus 296 ~~P~V~vKispd~~~ed~~~iA~~~~~aGaDgI~v~ntt~~~~d~~~~~~~~GGlSG~~~~~~sl~~i~~v~~~v~~~iP 375 (443)
T 1tv5_A 296 KKPLVFVKLAPDLNQEQKKEIADVLLETNIDGMIISNTTTQINDIKSFENKKGGVSGAKLKDISTKFICEMYNYTNKQIP 375 (443)
T ss_dssp SCCEEEEEECSCCCHHHHHHHHHHHHHTTCSEEEECCCBSCCCCCGGGTTCCSEEEEHHHHHHHHHHHHHHHHHTTTCSC
T ss_pred CCCeEEEEeCCCCCHHHHHHHHHHHHHcCCCEEEEECCCcccccccccccccCCcCCCcchHHHHHHHHHHHHHcCCCCc
Confidence 567 788765443322 235667789999998863211 12456666553 688
Q ss_pred EEE--ecCCHHHHHHHHHcCCCEEEE
Q 020013 113 VVP--QVGSFDEARKAVNAGVDAIIV 136 (332)
Q Consensus 113 v~~--~v~s~~~a~~a~~~g~D~ivv 136 (332)
|+. .+.|.+++.+++.+|||.|-+
T Consensus 376 VIg~GGI~s~~DA~e~l~aGAd~Vqi 401 (443)
T 1tv5_A 376 IIASGGIFSGLDALEKIEAGASVCQL 401 (443)
T ss_dssp EEEESSCCSHHHHHHHHHTTEEEEEE
T ss_pred EEEECCCCCHHHHHHHHHcCCCEEEE
Confidence 875 578999999999999999977
|
| >3e96_A Dihydrodipicolinate synthase; structural genomics, nysgrc, target 9375C, operon, PSI-2; 1.80A {Bacillus clausii ksm-k16} SCOP: c.1.10.0 | Back alignment and structure |
|---|
Probab=91.33 E-value=0.31 Score=44.46 Aligned_cols=76 Identities=14% Similarity=0.212 Sum_probs=48.6
Q ss_pred HHHHHHcCCCEEEEecCCCCcccCCCCchhhhHHHHHHHhCCCCCcEEeecCcCCHHHHHH----HHHcCcceeeecccc
Q 020013 123 ARKAVNAGVDAIIVQGREAGGHVIGQDGLISLLPMVVDLIGDRDIPIIAAGGIVDARGYVA----ALSLGAQGICLGTRF 198 (332)
Q Consensus 123 a~~a~~~g~D~ivv~G~eaGGh~~~~~~~~~ll~~i~~~~~~~~iPviaaGGI~~~~~v~~----al~~GA~gV~~GT~f 198 (332)
+....+.|+|+|++-|..+-+.......-..++..+++...+ ++|||+.-|- +-+++.+ +-.+|||++++-+.+
T Consensus 39 v~~li~~Gv~Gl~v~GtTGE~~~Ls~eEr~~v~~~~v~~~~g-rvpViaGvg~-~t~~ai~la~~A~~~Gadavlv~~P~ 116 (316)
T 3e96_A 39 VDRIVDNGIDVIVPCGNTSEFYALSLEEAKEEVRRTVEYVHG-RALVVAGIGY-ATSTAIELGNAAKAAGADAVMIHMPI 116 (316)
T ss_dssp HHHHHTTTCCEECTTSGGGTGGGSCHHHHHHHHHHHHHHHTT-SSEEEEEECS-SHHHHHHHHHHHHHHTCSEEEECCCC
T ss_pred HHHHHHcCCCEEEeCccccCcccCCHHHHHHHHHHHHHHhCC-CCcEEEEeCc-CHHHHHHHHHHHHhcCCCEEEEcCCC
Confidence 445668899999996654333321111224566666666643 6999987664 5555433 345899999999888
Q ss_pred cc
Q 020013 199 VA 200 (332)
Q Consensus 199 l~ 200 (332)
..
T Consensus 117 y~ 118 (316)
T 3e96_A 117 HP 118 (316)
T ss_dssp CS
T ss_pred CC
Confidence 74
|
| >4e7p_A Response regulator; DNA binding, cytosol, transcription regulator; 1.89A {Streptococcus pneumoniae} PDB: 4e7o_A | Back alignment and structure |
|---|
Probab=91.33 E-value=2.6 Score=32.61 Aligned_cols=81 Identities=16% Similarity=0.099 Sum_probs=57.6
Q ss_pred HHhCC-CEEEEecCCHHHHHHHH-HcCCCEEEEecCCCCcccCCCCchhhhHHHHHHHhCCCCCcEEeecCcCCHHHHHH
Q 020013 106 AHSAG-VKVVPQVGSFDEARKAV-NAGVDAIIVQGREAGGHVIGQDGLISLLPMVVDLIGDRDIPIIAAGGIVDARGYVA 183 (332)
Q Consensus 106 ~~~~g-~~v~~~v~s~~~a~~a~-~~g~D~ivv~G~eaGGh~~~~~~~~~ll~~i~~~~~~~~iPviaaGGI~~~~~v~~ 183 (332)
+...+ ...+..+.+.+++.... +..+|.|++.-.- .....+.++..+++... ++|||+-.+-.+.+.+.+
T Consensus 40 L~~~~~~~~v~~~~~~~~al~~l~~~~~dlii~D~~l------~~~~g~~~~~~l~~~~~--~~~ii~ls~~~~~~~~~~ 111 (150)
T 4e7p_A 40 LTLQPDVESVLQAKNGQEAIQLLEKESVDIAILDVEM------PVKTGLEVLEWIRSEKL--ETKVVVVTTFKRAGYFER 111 (150)
T ss_dssp HHTSTTEEEEEEESSHHHHHHHHTTSCCSEEEECSSC------SSSCHHHHHHHHHHTTC--SCEEEEEESCCCHHHHHH
T ss_pred HHhCCCcEEEEEECCHHHHHHHhhccCCCEEEEeCCC------CCCcHHHHHHHHHHhCC--CCeEEEEeCCCCHHHHHH
Confidence 34443 34556678888887665 4569999985321 11234678888877543 689998888889999999
Q ss_pred HHHcCcceeee
Q 020013 184 ALSLGAQGICL 194 (332)
Q Consensus 184 al~~GA~gV~~ 194 (332)
++.+||+++..
T Consensus 112 ~~~~g~~~~l~ 122 (150)
T 4e7p_A 112 AVKAGVDAYVL 122 (150)
T ss_dssp HHHTTCSEEEE
T ss_pred HHHCCCcEEEe
Confidence 99999998774
|
| >3gt7_A Sensor protein; structural genomics, signal receiver domain, kinase, PSI-2, protein structure initiative; 2.30A {Syntrophus aciditrophicus SB} | Back alignment and structure |
|---|
Probab=91.31 E-value=2.1 Score=33.47 Aligned_cols=85 Identities=21% Similarity=0.137 Sum_probs=59.2
Q ss_pred HHHHHhCCCEEEEecCCHHHHHHHHH-cCCCEEEEecCCCCcccCCCCchhhhHHHHHHHhCCCCCcEEeecCcCCHHHH
Q 020013 103 VLEAHSAGVKVVPQVGSFDEARKAVN-AGVDAIIVQGREAGGHVIGQDGLISLLPMVVDLIGDRDIPIIAAGGIVDARGY 181 (332)
Q Consensus 103 i~~~~~~g~~v~~~v~s~~~a~~a~~-~g~D~ivv~G~eaGGh~~~~~~~~~ll~~i~~~~~~~~iPviaaGGI~~~~~v 181 (332)
.+.+++.|..+ ..+.+.+++..... ..+|.|++.-.-.+ ...+.++..+++.....++|||+-.+-.+.+.+
T Consensus 24 ~~~L~~~g~~v-~~~~~~~~al~~l~~~~~dlii~D~~l~~------~~g~~~~~~lr~~~~~~~~pii~~s~~~~~~~~ 96 (154)
T 3gt7_A 24 KHILEETGYQT-EHVRNGREAVRFLSLTRPDLIISDVLMPE------MDGYALCRWLKGQPDLRTIPVILLTILSDPRDV 96 (154)
T ss_dssp HHHHHTTTCEE-EEESSHHHHHHHHTTCCCSEEEEESCCSS------SCHHHHHHHHHHSTTTTTSCEEEEECCCSHHHH
T ss_pred HHHHHHCCCEE-EEeCCHHHHHHHHHhCCCCEEEEeCCCCC------CCHHHHHHHHHhCCCcCCCCEEEEECCCChHHH
Confidence 34455667765 45778888877654 56999998532111 233677777776421126899998888899999
Q ss_pred HHHHHcCcceeee
Q 020013 182 VAALSLGAQGICL 194 (332)
Q Consensus 182 ~~al~~GA~gV~~ 194 (332)
.+++.+||+++..
T Consensus 97 ~~~~~~g~~~~l~ 109 (154)
T 3gt7_A 97 VRSLECGADDFIT 109 (154)
T ss_dssp HHHHHHCCSEEEE
T ss_pred HHHHHCCCCEEEe
Confidence 9999999998764
|
| >2vc6_A MOSA, dihydrodipicolinate synthase; DHDPS, TIM barrel, schiff base, lyase; HET: MCL; 1.95A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=91.29 E-value=0.42 Score=43.00 Aligned_cols=79 Identities=15% Similarity=0.272 Sum_probs=49.1
Q ss_pred HHHHHHHcCCCEEEEecCCCCcccCCCCchhhhHHHHHHHhCCCCCcEEe-ecCcCCHHHHH---HHHHcCcceeeeccc
Q 020013 122 EARKAVNAGVDAIIVQGREAGGHVIGQDGLISLLPMVVDLIGDRDIPIIA-AGGIVDARGYV---AALSLGAQGICLGTR 197 (332)
Q Consensus 122 ~a~~a~~~g~D~ivv~G~eaGGh~~~~~~~~~ll~~i~~~~~~~~iPvia-aGGI~~~~~v~---~al~~GA~gV~~GT~ 197 (332)
.++...+.|+|+|++-|..+-++......-..++..+++...+ ++|||+ .|+.++.+.+. .+-.+|||++++-+.
T Consensus 26 lv~~li~~Gv~gl~~~GttGE~~~Ls~~Er~~v~~~~~~~~~g-r~pviaGvg~~~t~~ai~la~~A~~~Gadavlv~~P 104 (292)
T 2vc6_A 26 LVEWQIEEGSFGLVPCGTTGESPTLSKSEHEQVVEITIKTANG-RVPVIAGAGSNSTAEAIAFVRHAQNAGADGVLIVSP 104 (292)
T ss_dssp HHHHHHHTTCSEEETTSGGGTGGGSCHHHHHHHHHHHHHHHTT-SSCBEEECCCSSHHHHHHHHHHHHHTTCSEEEEECC
T ss_pred HHHHHHHcCCCEEEECccccChhhCCHHHHHHHHHHHHHHhCC-CCcEEEecCCccHHHHHHHHHHHHHcCCCEEEEcCC
Confidence 3455678899999996664433321222234556666666643 689875 44554444332 344589999999999
Q ss_pred cccC
Q 020013 198 FVAS 201 (332)
Q Consensus 198 fl~t 201 (332)
+...
T Consensus 105 ~y~~ 108 (292)
T 2vc6_A 105 YYNK 108 (292)
T ss_dssp CSSC
T ss_pred CCCC
Confidence 8754
|
| >1zfj_A Inosine monophosphate dehydrogenase; IMPDH, CBS domains, oxidoreductase; HET: IMP; 1.90A {Streptococcus pyogenes} SCOP: c.1.5.1 d.37.1.1 | Back alignment and structure |
|---|
Probab=91.24 E-value=5.7 Score=38.10 Aligned_cols=110 Identities=19% Similarity=0.223 Sum_probs=71.2
Q ss_pred cHHHHHHHHhCCCceeecCCCCCCHHHHHHHHHHHHhhc-CCcEEEEeecCCCCHHHHHHHHhcCCcEEEEcc-------
Q 020013 24 GPELVAAVANAGGLGLLRAPDWEAPDYLRDLIRKTRSLT-ERPFGVGVVLAFPHNENIKAILSEKVAVLQVSW------- 95 (332)
Q Consensus 24 ~~~la~avs~aGglG~i~~~~~~~~e~~~~~i~~~r~~~-~~p~gvnl~~~~~~~~~~~~~~~~~~~~I~~~~------- 95 (332)
..+.+..+.++|.-.++........+...+.++++++.. +.|+..+-+. ..+....+.+.|++.|.++.
T Consensus 234 ~~~~a~~l~~~G~d~ivi~~a~g~~~~~~~~i~~l~~~~p~~pvi~G~v~---t~~~a~~~~~~Gad~I~vg~g~g~~~~ 310 (491)
T 1zfj_A 234 TFERAEALFEAGADAIVIDTAHGHSAGVLRKIAEIRAHFPNRTLIAGNIA---TAEGARALYDAGVDVVKVGIGPGSICT 310 (491)
T ss_dssp HHHHHHHHHHHTCSEEEECCSCTTCHHHHHHHHHHHHHCSSSCEEEEEEC---SHHHHHHHHHTTCSEEEECSSCCTTBC
T ss_pred HHHHHHHHHHcCCCeEEEeeecCcchhHHHHHHHHHHHCCCCcEeCCCcc---CHHHHHHHHHcCCCEEEECccCCcceE
Confidence 356677777777544432211123344556777777765 6776654333 24667778899999997763
Q ss_pred -------CCCcHHHHHHH----HhCCCEEEE--ecCCHHHHHHHHHcCCCEEEE
Q 020013 96 -------GEYSEELVLEA----HSAGVKVVP--QVGSFDEARKAVNAGVDAIIV 136 (332)
Q Consensus 96 -------g~~~~~~i~~~----~~~g~~v~~--~v~s~~~a~~a~~~g~D~ivv 136 (332)
+.+..+.+..+ ++.+++++. .+.+..++.++...|+|++.+
T Consensus 311 tr~~~~~~~p~~~~l~~~~~~~~~~~ipvia~GGi~~~~di~kal~~GA~~v~v 364 (491)
T 1zfj_A 311 TRVVAGVGVPQVTAIYDAAAVAREYGKTIIADGGIKYSGDIVKALAAGGNAVML 364 (491)
T ss_dssp HHHHTCCCCCHHHHHHHHHHHHHHTTCEEEEESCCCSHHHHHHHHHTTCSEEEE
T ss_pred EeeecCCCCCcHHHHHHHHHHHhhcCCCEEeeCCCCCHHHHHHHHHcCCcceee
Confidence 22222333333 346889886 578999999999999999998
|
| >3luf_A Two-component system response regulator/ggdef domain protein; structural genomics, ASA_2441, PSI-2, protein structure initiative; HET: MSE; 1.76A {Aeromonas salmonicida} PDB: 3mf4_A* | Back alignment and structure |
|---|
Probab=91.17 E-value=6.2 Score=34.14 Aligned_cols=83 Identities=16% Similarity=0.094 Sum_probs=56.7
Q ss_pred HHHhCCCEEEEecCCHHHHHHHHHcC--CCEEEEecCCCCcccCCCCchhhhHHHHHHHhCCCCCcEEeecCcCCHHHHH
Q 020013 105 EAHSAGVKVVPQVGSFDEARKAVNAG--VDAIIVQGREAGGHVIGQDGLISLLPMVVDLIGDRDIPIIAAGGIVDARGYV 182 (332)
Q Consensus 105 ~~~~~g~~v~~~v~s~~~a~~a~~~g--~D~ivv~G~eaGGh~~~~~~~~~ll~~i~~~~~~~~iPviaaGGI~~~~~v~ 182 (332)
.++..|..+ ..+.+.+++....+.. +|.|++.=.- .....+.+++++++.....++|||+..+-.+.....
T Consensus 143 ~L~~~~~~v-~~a~~~~eal~~l~~~~~~dlvllD~~m------P~~dG~~l~~~lr~~~~~~~~~ii~~s~~~~~~~~~ 215 (259)
T 3luf_A 143 QLRKQLLQV-HEASHAREALATLEQHPAIRLVLVDYYM------PEIDGISLVRMLRERYSKQQLAIIGISVSDKRGLSA 215 (259)
T ss_dssp HHHTTTCEE-EEESSHHHHHHHHHHCTTEEEEEECSCC------SSSCHHHHHHHHHHHCCTTTSEEEEEECSSSSSHHH
T ss_pred HHHHcCcEE-EEeCCHHHHHHHHhcCCCCCEEEEcCCC------CCCCHHHHHHHHHhccCCCCCeEEEEEccCCHHHHH
Confidence 344556554 4678888888776543 6888874221 112347788888875433368999888877888889
Q ss_pred HHHHcCcceeee
Q 020013 183 AALSLGAQGICL 194 (332)
Q Consensus 183 ~al~~GA~gV~~ 194 (332)
+++.+||++...
T Consensus 216 ~a~~~Ga~~yl~ 227 (259)
T 3luf_A 216 RYLKQGANDFLN 227 (259)
T ss_dssp HHHHTTCSEEEE
T ss_pred HHHhcChhheEc
Confidence 999999998753
|
| >4ef8_A Dihydroorotate dehydrogenase; phenyl isothiocyanate, PYRD, oxidoreductase, oxidoreductase-oxidor inhibitor complex; HET: FMN; 1.56A {Leishmania major} PDB: 3gye_A* 3gz3_A* 4ef9_A* 3tro_A* 3tjx_A* | Back alignment and structure |
|---|
Probab=91.13 E-value=1 Score=41.66 Aligned_cols=90 Identities=18% Similarity=0.139 Sum_probs=63.6
Q ss_pred CHHHHHHHHHHHHhhcCCcEEEEeecCCCCHHH---HHHHHhcC-CcEEEEc------------c---------------
Q 020013 47 APDYLRDLIRKTRSLTERPFGVGVVLAFPHNEN---IKAILSEK-VAVLQVS------------W--------------- 95 (332)
Q Consensus 47 ~~e~~~~~i~~~r~~~~~p~gvnl~~~~~~~~~---~~~~~~~~-~~~I~~~------------~--------------- 95 (332)
+++.+.++++.+++.+++|+.|.+-......+. ++.+.+.+ +|.|.++ .
T Consensus 177 ~~e~~~~il~av~~~~~~PV~vKi~p~~d~~~~~~~a~~~~~~Gg~d~I~~~NT~~~g~~idi~~~~~~~~~~~~~gGlS 256 (354)
T 4ef8_A 177 DFDAMRQCLTAVSEVYPHSFGVKMPPYFDFAHFDAAAEILNEFPKVQFITCINSIGNGLVIDAETESVVIKPKQGFGGLG 256 (354)
T ss_dssp SHHHHHHHHHHHHHHCCSCEEEEECCCCSHHHHHHHHHHHHTCTTEEEEEECCCEEEEECEETTTTEESCSGGGGEEEEE
T ss_pred CHHHHHHHHHHHHHhhCCCeEEEecCCCCHHHHHHHHHHHHhCCCccEEEEecccCcceeeeccCCccccccccccCCCC
Confidence 678899999999998899999988765432222 33344677 8888641 0
Q ss_pred CCC--c--HHHHHHHHhC--CCEEEE--ecCCHHHHHHHHHcCCCEEEE
Q 020013 96 GEY--S--EELVLEAHSA--GVKVVP--QVGSFDEARKAVNAGVDAIIV 136 (332)
Q Consensus 96 g~~--~--~~~i~~~~~~--g~~v~~--~v~s~~~a~~a~~~g~D~ivv 136 (332)
|.+ | .+++.++++. .++|+. .+.+.+++.+++.+|+|.|-+
T Consensus 257 G~~i~p~a~~~i~~v~~~~~~ipII~~GGI~s~~da~~~l~aGAd~V~v 305 (354)
T 4ef8_A 257 GRYVLPTALANINAFYRRCPGKLIFGCGGVYTGEDAFLHVLAGASMVQV 305 (354)
T ss_dssp GGGGHHHHHHHHHHHHHHCTTSEEEEESCCCSHHHHHHHHHHTEEEEEE
T ss_pred CCCCchHHHHHHHHHHHhCCCCCEEEECCcCCHHHHHHHHHcCCCEEEE
Confidence 000 1 2456666654 478875 478999999999999999987
|
| >3hdg_A Uncharacterized protein; two-component sensor activity, response regulator, PSI-II, 11227F, NYSGXRC, structural genomics; 2.27A {Wolinella succinogenes} SCOP: c.23.1.0 | Back alignment and structure |
|---|
Probab=91.08 E-value=2 Score=32.62 Aligned_cols=81 Identities=16% Similarity=0.120 Sum_probs=56.1
Q ss_pred HHHHhCCCEEEEecCCHHHHHHHH-HcCCCEEEEecCCCCcccCCCCchhhhHHHHHHHhCCCCCcEEeecCcCCHHHHH
Q 020013 104 LEAHSAGVKVVPQVGSFDEARKAV-NAGVDAIIVQGREAGGHVIGQDGLISLLPMVVDLIGDRDIPIIAAGGIVDARGYV 182 (332)
Q Consensus 104 ~~~~~~g~~v~~~v~s~~~a~~a~-~~g~D~ivv~G~eaGGh~~~~~~~~~ll~~i~~~~~~~~iPviaaGGI~~~~~v~ 182 (332)
+.+++.+..+ ..+.+.+++.... +..+|.|++.-.-. ....+.++..+++... .+|||+-.+-.+.+.+.
T Consensus 25 ~~L~~~~~~v-~~~~~~~~a~~~l~~~~~dlvi~d~~l~------~~~g~~~~~~l~~~~~--~~~ii~~s~~~~~~~~~ 95 (137)
T 3hdg_A 25 TIISNHFPEV-WSAGDGEEGERLFGLHAPDVIITDIRMP------KLGGLEMLDRIKAGGA--KPYVIVISAFSEMKYFI 95 (137)
T ss_dssp HHHHTTCSCE-EEESSHHHHHHHHHHHCCSEEEECSSCS------SSCHHHHHHHHHHTTC--CCEEEECCCCCCHHHHH
T ss_pred HHHHhcCcEE-EEECCHHHHHHHHhccCCCEEEEeCCCC------CCCHHHHHHHHHhcCC--CCcEEEEecCcChHHHH
Confidence 3344444443 4567777776554 45799999853211 1234677888876543 68999999988989999
Q ss_pred HHHHcCcceee
Q 020013 183 AALSLGAQGIC 193 (332)
Q Consensus 183 ~al~~GA~gV~ 193 (332)
+++.+|++++.
T Consensus 96 ~~~~~g~~~~l 106 (137)
T 3hdg_A 96 KAIELGVHLFL 106 (137)
T ss_dssp HHHHHCCSEEC
T ss_pred HHHhCCcceeE
Confidence 99999999865
|
| >3hv2_A Response regulator/HD domain protein; PSI-2, NYSGXRC, structural genomics, protein structure initiative; 1.50A {Pseudomonas fluorescens pf-5} | Back alignment and structure |
|---|
Probab=91.03 E-value=2.8 Score=32.61 Aligned_cols=82 Identities=13% Similarity=-0.008 Sum_probs=58.3
Q ss_pred HHHHhCCCEEEEecCCHHHHHHHH-HcCCCEEEEecCCCCcccCCCCchhhhHHHHHHHhCCCCCcEEeecCcCCHHHHH
Q 020013 104 LEAHSAGVKVVPQVGSFDEARKAV-NAGVDAIIVQGREAGGHVIGQDGLISLLPMVVDLIGDRDIPIIAAGGIVDARGYV 182 (332)
Q Consensus 104 ~~~~~~g~~v~~~v~s~~~a~~a~-~~g~D~ivv~G~eaGGh~~~~~~~~~ll~~i~~~~~~~~iPviaaGGI~~~~~v~ 182 (332)
+.+++.|..+. .+.+.+++.... +..+|.|++.-.-.+ ...+.++..+++... ++|||+-.+-.+.+.+.
T Consensus 32 ~~L~~~g~~v~-~~~~~~~a~~~l~~~~~dlvi~D~~l~~------~~g~~~~~~l~~~~~--~~~ii~~s~~~~~~~~~ 102 (153)
T 3hv2_A 32 QLLSPLPYTLH-FARDATQALQLLASREVDLVISAAHLPQ------MDGPTLLARIHQQYP--STTRILLTGDPDLKLIA 102 (153)
T ss_dssp HHHTTSSCEEE-EESSHHHHHHHHHHSCCSEEEEESCCSS------SCHHHHHHHHHHHCT--TSEEEEECCCCCHHHHH
T ss_pred HHhcccCcEEE-EECCHHHHHHHHHcCCCCEEEEeCCCCc------CcHHHHHHHHHhHCC--CCeEEEEECCCCHHHHH
Confidence 34455676655 677888877654 557999998533111 234677888877543 68999999888999999
Q ss_pred HHHHcC-cceeee
Q 020013 183 AALSLG-AQGICL 194 (332)
Q Consensus 183 ~al~~G-A~gV~~ 194 (332)
+++..| |+++..
T Consensus 103 ~~~~~g~~~~~l~ 115 (153)
T 3hv2_A 103 KAINEGEIYRYLS 115 (153)
T ss_dssp HHHHTTCCSEEEC
T ss_pred HHHhCCCcceEEe
Confidence 999999 888753
|
| >1mdl_A Mandelate racemase; isomerase, mandelate pathway, magnesium; HET: RMN SMN; 1.85A {Pseudomonas aeruginosa} SCOP: c.1.11.2 d.54.1.1 PDB: 1mdr_A* 3uxk_A* 3uxl_A* 1dtn_A* 1mra_A* 2mnr_A 1mns_A | Back alignment and structure |
|---|
Probab=90.94 E-value=2.5 Score=38.84 Aligned_cols=107 Identities=11% Similarity=0.063 Sum_probs=73.6
Q ss_pred HHHHHhcCCcEEEEccCC-CcH---HHHHHHHh---CCCEEEEecC---CHHHHHH----HHHcCCCEEEEecCCCCccc
Q 020013 80 IKAILSEKVAVLQVSWGE-YSE---ELVLEAHS---AGVKVVPQVG---SFDEARK----AVNAGVDAIIVQGREAGGHV 145 (332)
Q Consensus 80 ~~~~~~~~~~~I~~~~g~-~~~---~~i~~~~~---~g~~v~~~v~---s~~~a~~----a~~~g~D~ivv~G~eaGGh~ 145 (332)
+..+.+.|.+.|-++.|. .+. +.++.+++ .++++...++ +.+++.. ..+.|+++| +-+
T Consensus 152 a~~~~~~Gf~~iKik~g~~~~~~~~e~v~avr~a~g~~~~l~vDan~~~~~~~a~~~~~~l~~~~i~~i--E~P------ 223 (359)
T 1mdl_A 152 AVTAAELGFRAVKTRIGYPALDQDLAVVRSIRQAVGDDFGIMVDYNQSLDVPAAIKRSQALQQEGVTWI--EEP------ 223 (359)
T ss_dssp HHHHHHTTCSEEEEECCCSSHHHHHHHHHHHHHHHCSSSEEEEECTTCSCHHHHHHHHHHHHHHTCSCE--ECC------
T ss_pred HHHHHHcCCCEEEEecCCCCHHHHHHHHHHHHHHhCCCCEEEEECCCCCCHHHHHHHHHHHHHhCCCeE--ECC------
Confidence 344556799999998775 333 44555555 3677877765 5666543 456688876 222
Q ss_pred CCCCchhhhHHHHHHHhCCCCCcEEeecCcCCHHHHHHHHHcC-cceeeecccc
Q 020013 146 IGQDGLISLLPMVVDLIGDRDIPIIAAGGIVDARGYVAALSLG-AQGICLGTRF 198 (332)
Q Consensus 146 ~~~~~~~~ll~~i~~~~~~~~iPviaaGGI~~~~~v~~al~~G-A~gV~~GT~f 198 (332)
-....+..+.++++.+ ++||++.+.+.+.+++.+++..| +|.|++....
T Consensus 224 -~~~~~~~~~~~l~~~~---~iPI~~de~~~~~~~~~~~i~~~~~d~v~ik~~~ 273 (359)
T 1mdl_A 224 -TLQHDYEGHQRIQSKL---NVPVQMGENWLGPEEMFKALSIGACRLAMPDAMK 273 (359)
T ss_dssp -SCTTCHHHHHHHHHTC---SSCEEECTTCCSHHHHHHHHHTTCCSEECCBTTT
T ss_pred -CChhhHHHHHHHHHhC---CCCEEeCCCCCCHHHHHHHHHcCCCCEEeecchh
Confidence 0113466677777766 79999999999999999999887 6888875443
|
| >2nx9_A Oxaloacetate decarboxylase 2, subunit alpha; carboxyltransferase structure, B enzymes, Zn2+ binding site, TIM-barrel fold, lyase; 1.70A {Vibrio cholerae} | Back alignment and structure |
|---|
Probab=90.94 E-value=3.6 Score=39.46 Aligned_cols=112 Identities=13% Similarity=0.200 Sum_probs=75.5
Q ss_pred HHHHHHHHhcCCcEEEEccCC-Cc---HHHHHHHHhCCCEEEEec-------CCHH----HHHHHHHcCCCEEEEecCCC
Q 020013 77 NENIKAILSEKVAVLQVSWGE-YS---EELVLEAHSAGVKVVPQV-------GSFD----EARKAVNAGVDAIIVQGREA 141 (332)
Q Consensus 77 ~~~~~~~~~~~~~~I~~~~g~-~~---~~~i~~~~~~g~~v~~~v-------~s~~----~a~~a~~~g~D~ivv~G~ea 141 (332)
...++.+.+.+++.|.+.... +. .+.++.+++.|..+...+ .+++ -++.+.+.|+|.|.+--.-
T Consensus 103 ~~~v~~a~~~Gvd~i~if~~~sd~~ni~~~i~~ak~~G~~v~~~i~~~~~~~~~~e~~~~~a~~l~~~Gad~I~l~DT~- 181 (464)
T 2nx9_A 103 DTFVERAVKNGMDVFRVFDAMNDVRNMQQALQAVKKMGAHAQGTLCYTTSPVHNLQTWVDVAQQLAELGVDSIALKDMA- 181 (464)
T ss_dssp HHHHHHHHHTTCCEEEECCTTCCTHHHHHHHHHHHHTTCEEEEEEECCCCTTCCHHHHHHHHHHHHHTTCSEEEEEETT-
T ss_pred HHHHHHHHhCCcCEEEEEEecCHHHHHHHHHHHHHHCCCEEEEEEEeeeCCCCCHHHHHHHHHHHHHCCCCEEEEcCCC-
Confidence 345778889999999875322 12 245677788999875443 1443 4566788999999884432
Q ss_pred CcccCCCCchhhhHHHHHHHhCCCCCcEEee----cCcCCHHHHHHHHHcCcceeeec
Q 020013 142 GGHVIGQDGLISLLPMVVDLIGDRDIPIIAA----GGIVDARGYVAALSLGAQGICLG 195 (332)
Q Consensus 142 GGh~~~~~~~~~ll~~i~~~~~~~~iPviaa----GGI~~~~~v~~al~~GA~gV~~G 195 (332)
|.. .+.....++..+++.+ ++||-.- .|.+ -.+..+++.+||+.|..-
T Consensus 182 -G~~-~P~~v~~lv~~l~~~~---~~~i~~H~Hnd~GlA-vAN~laAv~AGa~~VD~t 233 (464)
T 2nx9_A 182 -GIL-TPYAAEELVSTLKKQV---DVELHLHCHSTAGLA-DMTLLKAIEAGVDRVDTA 233 (464)
T ss_dssp -SCC-CHHHHHHHHHHHHHHC---CSCEEEEECCTTSCH-HHHHHHHHHTTCSEEEEB
T ss_pred -CCc-CHHHHHHHHHHHHHhc---CCeEEEEECCCCChH-HHHHHHHHHhCCCEEEEe
Confidence 221 2334567788888776 6787665 6774 577888899999987653
|
| >2zay_A Response regulator receiver protein; structural genomics, NYSGXRC, target 11006U, protein structure initiative; 2.00A {Desulfuromonas acetoxidans} | Back alignment and structure |
|---|
Probab=90.93 E-value=1.9 Score=33.15 Aligned_cols=87 Identities=18% Similarity=0.204 Sum_probs=59.5
Q ss_pred HHHHHHHhCCCEEEEecCCHHHHHHHH-HcCCCEEEEecCCCCcccCCCCchhhhHHHHHHHhCCCCCcEEeecCcCCHH
Q 020013 101 ELVLEAHSAGVKVVPQVGSFDEARKAV-NAGVDAIIVQGREAGGHVIGQDGLISLLPMVVDLIGDRDIPIIAAGGIVDAR 179 (332)
Q Consensus 101 ~~i~~~~~~g~~v~~~v~s~~~a~~a~-~~g~D~ivv~G~eaGGh~~~~~~~~~ll~~i~~~~~~~~iPviaaGGI~~~~ 179 (332)
.+.+.+...|..+. .+.+.+++.... +..+|.|++.-.-. ....+.++..+++.....++|||+-.+-.+.+
T Consensus 23 ~l~~~L~~~g~~v~-~~~~~~~a~~~l~~~~~dlii~d~~l~------~~~g~~~~~~l~~~~~~~~~pii~ls~~~~~~ 95 (147)
T 2zay_A 23 ASISALSQEGFDII-QCGNAIEAVPVAVKTHPHLIITEANMP------KISGMDLFNSLKKNPQTASIPVIALSGRATAK 95 (147)
T ss_dssp HHHHHHHHHTEEEE-EESSHHHHHHHHHHHCCSEEEEESCCS------SSCHHHHHHHHHTSTTTTTSCEEEEESSCCHH
T ss_pred HHHHHHHHcCCeEE-EeCCHHHHHHHHHcCCCCEEEEcCCCC------CCCHHHHHHHHHcCcccCCCCEEEEeCCCCHH
Confidence 34445556677665 677887776654 45799999853211 12336778887762111268999988888889
Q ss_pred HHHHHHHcCcceeee
Q 020013 180 GYVAALSLGAQGICL 194 (332)
Q Consensus 180 ~v~~al~~GA~gV~~ 194 (332)
....++.+|++++..
T Consensus 96 ~~~~~~~~g~~~~l~ 110 (147)
T 2zay_A 96 EEAQLLDMGFIDFIA 110 (147)
T ss_dssp HHHHHHHHTCSEEEE
T ss_pred HHHHHHhCCCCEEEe
Confidence 999999999998764
|
| >1vcf_A Isopentenyl-diphosphate delta-isomerase; TIM barrel, structural genomics, riken structural genomics/P initiative, RSGI; HET: FMN; 2.60A {Thermus thermophilus} SCOP: c.1.4.1 PDB: 1vcg_A* 3dh7_A* | Back alignment and structure |
|---|
Probab=90.88 E-value=1.2 Score=40.71 Aligned_cols=85 Identities=21% Similarity=0.158 Sum_probs=58.9
Q ss_pred HHHHHHHHHhhcCCcEEEEeecCCCCHHHHHHHHhcCCcEEEE--ccCC------------------------CcHHHHH
Q 020013 51 LRDLIRKTRSLTERPFGVGVVLAFPHNENIKAILSEKVAVLQV--SWGE------------------------YSEELVL 104 (332)
Q Consensus 51 ~~~~i~~~r~~~~~p~gvnl~~~~~~~~~~~~~~~~~~~~I~~--~~g~------------------------~~~~~i~ 104 (332)
+.+.++++++ ++.|+.+..+......+....+.+.|+|+|.+ +.|. +..+.+.
T Consensus 170 ~~~~i~~vr~-~~~Pv~vK~v~~g~~~e~a~~~~~~G~d~I~vs~~ggt~~~~~~~~r~~~~~~~~~~~~~g~~~~~~l~ 248 (332)
T 1vcf_A 170 LVERLAELLP-LPFPVMVKEVGHGLSREAALALRDLPLAAVDVAGAGGTSWARVEEWVRFGEVRHPELCEIGIPTARAIL 248 (332)
T ss_dssp HHHHHHHHCS-CSSCEEEECSSSCCCHHHHHHHTTSCCSEEECCCBTSCCHHHHHHTC--------CCTTCSCBHHHHHH
T ss_pred HHHHHHHHHc-CCCCEEEEecCCCCCHHHHHHHHHcCCCEEEeCCCCCCcchhHHHhhccccchhhhHhhccccHHHHHH
Confidence 4567888988 88999987432212345677788899999988 3221 1112334
Q ss_pred HHHh-C-CCEEEE--ecCCHHHHHHHHHcCCCEEEE
Q 020013 105 EAHS-A-GVKVVP--QVGSFDEARKAVNAGVDAIIV 136 (332)
Q Consensus 105 ~~~~-~-g~~v~~--~v~s~~~a~~a~~~g~D~ivv 136 (332)
.+++ . +++|+. .+.+.+++.+++..|||+|.+
T Consensus 249 ~v~~~~~~ipvia~GGI~~~~d~~kal~~GAd~V~i 284 (332)
T 1vcf_A 249 EVREVLPHLPLVASGGVYTGTDGAKALALGADLLAV 284 (332)
T ss_dssp HHHHHCSSSCEEEESSCCSHHHHHHHHHHTCSEEEE
T ss_pred HHHHhcCCCeEEEECCCCCHHHHHHHHHhCCChHhh
Confidence 4433 3 577775 578999999999999999988
|
| >3b8i_A PA4872 oxaloacetate decarboxylase; alpha/beta barrel, helix swapping, lyase; 1.90A {Pseudomonas aeruginosa} | Back alignment and structure |
|---|
Probab=90.82 E-value=1.4 Score=39.50 Aligned_cols=90 Identities=17% Similarity=0.047 Sum_probs=59.2
Q ss_pred HHHHHhC-CCEEEEecCCHHHHHHHHHcCCCEEEEecCCC----CcccCC-CCchhh---hHHHHHHHhCCCCCcEEeec
Q 020013 103 VLEAHSA-GVKVVPQVGSFDEARKAVNAGVDAIIVQGREA----GGHVIG-QDGLIS---LLPMVVDLIGDRDIPIIAAG 173 (332)
Q Consensus 103 i~~~~~~-g~~v~~~v~s~~~a~~a~~~g~D~ivv~G~ea----GGh~~~-~~~~~~---ll~~i~~~~~~~~iPviaaG 173 (332)
++.+++. ...+++.+.+.-.|+.+.++|.|+|.+.+... =|+.+. ..+.-. .+..|.+.. ++||++..
T Consensus 13 lr~l~~~~~~i~~~~a~D~~sA~i~e~aGf~ai~vs~s~~a~~~lG~pD~~~vt~~em~~~~~~I~r~~---~~PviaD~ 89 (287)
T 3b8i_A 13 FRALLDSSRCYHTASVFDPMSARIAADLGFECGILGGSVASLQVLAAPDFALITLSEFVEQATRIGRVA---RLPVIADA 89 (287)
T ss_dssp HHHHHHSSCCEECEECCSHHHHHHHHHTTCSCEEECHHHHHHHHHSCCSSSCSCHHHHHHHHHHHHTTC---SSCEEEEC
T ss_pred HHHHHhCCCcEEEecCCCHHHHHHHHHcCCCEEEeCcHHHHHHhcCCCCCCCCCHHHHHHHHHHHHhcC---CCCEEEEC
Confidence 4455554 46677899999999999999999999976622 244432 222222 333444433 78999864
Q ss_pred C--cCCHHH----HHHHHHcCcceeeec
Q 020013 174 G--IVDARG----YVAALSLGAQGICLG 195 (332)
Q Consensus 174 G--I~~~~~----v~~al~~GA~gV~~G 195 (332)
- -+++.+ +..++++||+||.+=
T Consensus 90 d~Gyg~~~~~~~~v~~l~~aGa~gv~iE 117 (287)
T 3b8i_A 90 DHGYGNALNVMRTVVELERAGIAALTIE 117 (287)
T ss_dssp TTCSSSHHHHHHHHHHHHHHTCSEEEEE
T ss_pred CCCCCCHHHHHHHHHHHHHhCCeEEEEc
Confidence 3 446554 556777999999983
|
| >3d0c_A Dihydrodipicolinate synthase; lysine biosynthesis, pyruvate, TIM barrel, NYSGXRC, PSI-2, structural genomics; 1.90A {Oceanobacillus iheyensis HTE831} | Back alignment and structure |
|---|
Probab=90.74 E-value=0.45 Score=43.31 Aligned_cols=77 Identities=13% Similarity=0.183 Sum_probs=48.0
Q ss_pred HHHHHHcCCCEEEEecCCCCcccCCCCchhhhHHHHHHHhCCCCCcEEe-ecCcCCHHHHH---HHHHcCcceeeecccc
Q 020013 123 ARKAVNAGVDAIIVQGREAGGHVIGQDGLISLLPMVVDLIGDRDIPIIA-AGGIVDARGYV---AALSLGAQGICLGTRF 198 (332)
Q Consensus 123 a~~a~~~g~D~ivv~G~eaGGh~~~~~~~~~ll~~i~~~~~~~~iPvia-aGGI~~~~~v~---~al~~GA~gV~~GT~f 198 (332)
+....+.|+|+|++-|..+-+.......-..++..+++...+ ++|||+ .|+ ++.+.+. .+-++|||++++-+.+
T Consensus 39 v~~li~~Gv~gl~v~GtTGE~~~Ls~eEr~~vi~~~~~~~~g-rvpViaGvg~-st~~ai~la~~A~~~Gadavlv~~P~ 116 (314)
T 3d0c_A 39 VEFLLQNGIEVIVPNGNTGEFYALTIEEAKQVATRVTELVNG-RATVVAGIGY-SVDTAIELGKSAIDSGADCVMIHQPV 116 (314)
T ss_dssp HHHHHHTTCSEECTTSGGGTGGGSCHHHHHHHHHHHHHHHTT-SSEEEEEECS-SHHHHHHHHHHHHHTTCSEEEECCCC
T ss_pred HHHHHHcCCCEEEECcccCChhhCCHHHHHHHHHHHHHHhCC-CCeEEecCCc-CHHHHHHHHHHHHHcCCCEEEECCCC
Confidence 445667899999986654333321112234566666766643 689885 444 4444432 3345899999999998
Q ss_pred ccC
Q 020013 199 VAS 201 (332)
Q Consensus 199 l~t 201 (332)
...
T Consensus 117 y~~ 119 (314)
T 3d0c_A 117 HPY 119 (314)
T ss_dssp CSC
T ss_pred CCC
Confidence 754
|
| >3g8r_A Probable spore coat polysaccharide biosynthesis P; structural genomics, protein structure initiative; 2.49A {Chromobacterium violaceum atcc 12472} | Back alignment and structure |
|---|
Probab=90.74 E-value=1.8 Score=39.91 Aligned_cols=74 Identities=18% Similarity=0.152 Sum_probs=58.8
Q ss_pred HHHHHHHhCCCEEEEecCCHHHHHHHHHcCCCEEEEecCCCCcccCCCCchhhhHHHHHHHhCCCCCcEEeecCcCCHHH
Q 020013 101 ELVLEAHSAGVKVVPQVGSFDEARKAVNAGVDAIIVQGREAGGHVIGQDGLISLLPMVVDLIGDRDIPIIAAGGIVDARG 180 (332)
Q Consensus 101 ~~i~~~~~~g~~v~~~v~s~~~a~~a~~~g~D~ivv~G~eaGGh~~~~~~~~~ll~~i~~~~~~~~iPviaaGGI~~~~~ 180 (332)
.+.+.+++.|+.++..+-+.+.+....+.++|++-+-. +....+.||+.+.+. +.|||..=|.+|-+.
T Consensus 82 ~L~~~~~~~Gi~~~st~fD~~svd~l~~~~v~~~KI~S--------~~~~N~pLL~~va~~----gKPviLstGmstl~E 149 (350)
T 3g8r_A 82 KLVAEMKANGFKAICTPFDEESVDLIEAHGIEIIKIAS--------CSFTDWPLLERIARS----DKPVVASTAGARRED 149 (350)
T ss_dssp HHHHHHHHTTCEEEEEECSHHHHHHHHHTTCCEEEECS--------SSTTCHHHHHHHHTS----CSCEEEECTTCCHHH
T ss_pred HHHHHHHHcCCcEEeccCCHHHHHHHHHcCCCEEEECc--------ccccCHHHHHHHHhh----CCcEEEECCCCCHHH
Confidence 34455677899999999999999999999999999811 223447788887652 789999999999999
Q ss_pred HHHHHH
Q 020013 181 YVAALS 186 (332)
Q Consensus 181 v~~al~ 186 (332)
+..+..
T Consensus 150 i~~Ave 155 (350)
T 3g8r_A 150 IDKVVS 155 (350)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 877654
|
| >3i65_A Dihydroorotate dehydrogenase homolog, mitochondrial; triazolopyrimidine,inhibitor, DSM1, FAD, flavoprotein, membrane, mitochondrion; HET: JZ8 FMN ORO LDA; 2.00A {Plasmodium falciparum 3D7} PDB: 3i68_A* 3i6r_A* 3o8a_A* 3sfk_A* | Back alignment and structure |
|---|
Probab=90.68 E-value=1 Score=42.57 Aligned_cols=90 Identities=13% Similarity=0.182 Sum_probs=63.3
Q ss_pred CHHHHHHHHHHHHhh--------------------cCCc-EEEEeecCCCC---HHHHHHHHhcCCcEEEEccCC-----
Q 020013 47 APDYLRDLIRKTRSL--------------------TERP-FGVGVVLAFPH---NENIKAILSEKVAVLQVSWGE----- 97 (332)
Q Consensus 47 ~~e~~~~~i~~~r~~--------------------~~~p-~gvnl~~~~~~---~~~~~~~~~~~~~~I~~~~g~----- 97 (332)
+++.+.++++.+++. .++| +.|.+-.+..+ .+..+.+.+.|+|.|.++-..
T Consensus 232 ~~~~l~~ll~aV~~~~~~~~~~~~~~~~~~~~~~~~~~P~V~VKi~pd~~~~~i~~iA~~a~~aGaDgIiv~Ntt~~r~d 311 (415)
T 3i65_A 232 EAGKLKNIILSVKEEIDNLEKNNIMNDEFLWFNTTKKKPLVFVKLAPDLNQEQKKEIADVLLETNIDGMIISNTTTQIND 311 (415)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHCCSCHHHHCCSSSSSCCEEEEEECSCCCHHHHHHHHHHHHHHTCSEEEECCCBSCCCC
T ss_pred CHHHHHHHHHHHHHHHHhhcccccccccccccccCCCCCeEEEEecCCCCHHHHHHHHHHHHHcCCcEEEEeCCCccccc
Confidence 567788888887764 2578 78887765442 234566778899999876210
Q ss_pred -------------Cc-----HHHHHHHHhC---CCEEEE--ecCCHHHHHHHHHcCCCEEEE
Q 020013 98 -------------YS-----EELVLEAHSA---GVKVVP--QVGSFDEARKAVNAGVDAIIV 136 (332)
Q Consensus 98 -------------~~-----~~~i~~~~~~---g~~v~~--~v~s~~~a~~a~~~g~D~ivv 136 (332)
++ .+++..+++. .++|+. .+.|.+++.+++.+|+|+|.+
T Consensus 312 l~~~~~~~GGlSG~a~~p~al~~I~~v~~~v~~~iPIIg~GGI~s~eDa~e~l~aGAd~VqI 373 (415)
T 3i65_A 312 IKSFENKKGGVSGAKLKDISTKFICEMYNYTNKQIPIIASGGIFSGLDALEKIEAGASVCQL 373 (415)
T ss_dssp CGGGTTCCSEEEEGGGHHHHHHHHHHHHHHTTTCSCEEECSSCCSHHHHHHHHHHTEEEEEE
T ss_pred ccccccccCCcCCccchHHHHHHHHHHHHHhCCCCCEEEECCCCCHHHHHHHHHcCCCEEEE
Confidence 00 1456666553 477775 478999999999999999987
|
| >1zlp_A PSR132, petal death protein; TIM-barrel, helix swapping,2-ethyl-3-methylmalate lyase, 2-P methylmalate lyase, lyase/PEP mutase superfamily; 2.70A {Dianthus caryophyllus} | Back alignment and structure |
|---|
Probab=90.64 E-value=1.4 Score=40.00 Aligned_cols=90 Identities=17% Similarity=0.111 Sum_probs=60.0
Q ss_pred HHHHhCCCEEEEecCCHHHHHHHHHcCCCEEEEecCCCC----cccCCC-Cch---hhhHHHHHHHhCCCCCcEEeecC-
Q 020013 104 LEAHSAGVKVVPQVGSFDEARKAVNAGVDAIIVQGREAG----GHVIGQ-DGL---ISLLPMVVDLIGDRDIPIIAAGG- 174 (332)
Q Consensus 104 ~~~~~~g~~v~~~v~s~~~a~~a~~~g~D~ivv~G~eaG----Gh~~~~-~~~---~~ll~~i~~~~~~~~iPviaaGG- 174 (332)
+..+.....+++.+.+.-.|+.+.++|.|+|.+.|...+ |+.+.. .+. ...++.|.+..+ ++||++..-
T Consensus 33 ~l~~~~~~i~~~~ayD~~sA~i~e~aGfdai~vs~~~~a~~~lG~pD~~~vt~~em~~~~~~I~r~~~--~~PviaD~d~ 110 (318)
T 1zlp_A 33 RLIEEHGSVLMPGVQDALSAAVVEKTGFHAAFVSGYSVSAAMLGLPDFGLLTTTEVVEATRRITAAAP--NLCVVVDGDT 110 (318)
T ss_dssp HHHHHSSSEEEEEECSHHHHHHHHHTTCSEEEECHHHHHHHHHCCCSSSCSCHHHHHHHHHHHHHHSS--SSEEEEECTT
T ss_pred HHHhCCCcEEEecCCCHHHHHHHHHcCCCEEEECcHHHhhHhcCCCCCCCCCHHHHHHHHHHHHhhcc--CCCEEEeCCC
Confidence 333345677889999999999999999999999774222 444322 222 333445555543 699998753
Q ss_pred -cCCHH----HHHHHHHcCcceeeec
Q 020013 175 -IVDAR----GYVAALSLGAQGICLG 195 (332)
Q Consensus 175 -I~~~~----~v~~al~~GA~gV~~G 195 (332)
-+++. ++..++++||+||.+=
T Consensus 111 Gyg~~~~v~~tv~~l~~aGaagv~iE 136 (318)
T 1zlp_A 111 GGGGPLNVQRFIRELISAGAKGVFLE 136 (318)
T ss_dssp CSSSHHHHHHHHHHHHHTTCCEEEEE
T ss_pred CCCCHHHHHHHHHHHHHcCCcEEEEC
Confidence 33544 4566778999999883
|
| >2qr3_A Two-component system response regulator; structural genomics, signal receiver, PSI-2, protein structu initiative; 1.80A {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=90.61 E-value=2 Score=32.61 Aligned_cols=87 Identities=14% Similarity=0.129 Sum_probs=58.3
Q ss_pred HHHHhCCCEEEEecCCHHHHHHHH-HcCCCEEEEecCCCCcccCCCCchhhhHHHHHHHhCCCCCcEEeecCcCCHHHHH
Q 020013 104 LEAHSAGVKVVPQVGSFDEARKAV-NAGVDAIIVQGREAGGHVIGQDGLISLLPMVVDLIGDRDIPIIAAGGIVDARGYV 182 (332)
Q Consensus 104 ~~~~~~g~~v~~~v~s~~~a~~a~-~~g~D~ivv~G~eaGGh~~~~~~~~~ll~~i~~~~~~~~iPviaaGGI~~~~~v~ 182 (332)
+.++..|..+. .+.+.+++.... +..+|.|++.-.-.++.. .....+.++..+++... ++|||+-.+-.+.+.+.
T Consensus 21 ~~L~~~g~~v~-~~~~~~~a~~~l~~~~~dlvi~d~~~~~~~~-~~~~g~~~~~~l~~~~~--~~~ii~ls~~~~~~~~~ 96 (140)
T 2qr3_A 21 LLLKNHFSKVI-TLSSPVSLSTVLREENPEVVLLDMNFTSGIN-NGNEGLFWLHEIKRQYR--DLPVVLFTAYADIDLAV 96 (140)
T ss_dssp HHHTTTSSEEE-EECCHHHHHHHHHHSCEEEEEEETTTTC------CCHHHHHHHHHHHCT--TCCEEEEEEGGGHHHHH
T ss_pred HHHHhCCcEEE-EeCCHHHHHHHHHcCCCCEEEEeCCcCCCCC-CCccHHHHHHHHHhhCc--CCCEEEEECCCCHHHHH
Confidence 34445677665 677888777655 456899998643221110 01234677778777543 68999888887888899
Q ss_pred HHHHcCcceeee
Q 020013 183 AALSLGAQGICL 194 (332)
Q Consensus 183 ~al~~GA~gV~~ 194 (332)
.++.+|++++..
T Consensus 97 ~~~~~g~~~~l~ 108 (140)
T 2qr3_A 97 RGIKEGASDFVV 108 (140)
T ss_dssp HHHHTTCCEEEE
T ss_pred HHHHcCchheee
Confidence 999999998764
|
| >1k66_A Phytochrome response regulator RCPB; CHEY homologue, homodimer, APO-protein, (beta/alpha)5, signaling protein; 1.75A {Tolypothrix SP} SCOP: c.23.1.1 | Back alignment and structure |
|---|
Probab=90.58 E-value=1.8 Score=33.11 Aligned_cols=85 Identities=11% Similarity=0.017 Sum_probs=57.8
Q ss_pred HHHHhCCCE-EEEecCCHHHHHHHHH-----------cCCCEEEEecCCCCcccCCCCchhhhHHHHHHHhCCCCCcEEe
Q 020013 104 LEAHSAGVK-VVPQVGSFDEARKAVN-----------AGVDAIIVQGREAGGHVIGQDGLISLLPMVVDLIGDRDIPIIA 171 (332)
Q Consensus 104 ~~~~~~g~~-v~~~v~s~~~a~~a~~-----------~g~D~ivv~G~eaGGh~~~~~~~~~ll~~i~~~~~~~~iPvia 171 (332)
+.++..|.. .+..+.+.+++..... ..+|.|++.-.-. ....+.++..+++.....++|||+
T Consensus 24 ~~L~~~g~~~~v~~~~~~~~al~~l~~~~~~~~~~~~~~~dlvi~D~~l~------~~~g~~~~~~l~~~~~~~~~~ii~ 97 (149)
T 1k66_A 24 RLLQREGVVNPIYRCITGDQALDFLYQTGSYCNPDIAPRPAVILLDLNLP------GTDGREVLQEIKQDEVLKKIPVVI 97 (149)
T ss_dssp HHHHHTTBCSCEEEECSHHHHHHHHHTCCSSSCGGGCCCCSEEEECSCCS------SSCHHHHHHHHTTSTTGGGSCEEE
T ss_pred HHHHHcCCCceEEEECCHHHHHHHHHhcccccCcccCCCCcEEEEECCCC------CCCHHHHHHHHHhCcccCCCeEEE
Confidence 445556652 3456788888887765 5789999853211 123366777776542102689998
Q ss_pred ecCcCCHHHHHHHHHcCcceeee
Q 020013 172 AGGIVDARGYVAALSLGAQGICL 194 (332)
Q Consensus 172 aGGI~~~~~v~~al~~GA~gV~~ 194 (332)
-.+-.+.+.+..++..|++++..
T Consensus 98 ~t~~~~~~~~~~~~~~g~~~~l~ 120 (149)
T 1k66_A 98 MTTSSNPKDIEICYSYSISSYIV 120 (149)
T ss_dssp EESCCCHHHHHHHHHTTCSEEEE
T ss_pred EeCCCCHHHHHHHHHCCCCEEEe
Confidence 88888889999999999998764
|
| >2yxb_A Coenzyme B12-dependent mutase; alpha/beta, structural genomics, NPPSFA, national project on structural and functional analyses; 1.80A {Aeropyrum pernix} | Back alignment and structure |
|---|
Probab=90.49 E-value=2 Score=34.82 Aligned_cols=81 Identities=27% Similarity=0.343 Sum_probs=48.2
Q ss_pred HHHhCCCEEEE--ecCCHHHH-HHHHHcCCCEEEEecCCCCcccCCCCchhhhHHHHHHHhCC---CCCcEEeecCcCCH
Q 020013 105 EAHSAGVKVVP--QVGSFDEA-RKAVNAGVDAIIVQGREAGGHVIGQDGLISLLPMVVDLIGD---RDIPIIAAGGIVDA 178 (332)
Q Consensus 105 ~~~~~g~~v~~--~v~s~~~a-~~a~~~g~D~ivv~G~eaGGh~~~~~~~~~ll~~i~~~~~~---~~iPviaaGGI~~~ 178 (332)
.++..|..|+. .-.++++. ..+.+.++|+|.+.... + ..+..++++.+.++. .++||++.|-+ ..
T Consensus 41 ~l~~~G~eVi~lG~~~p~e~lv~aa~~~~~diV~lS~~~-~-------~~~~~~~~~i~~L~~~g~~~i~v~vGG~~-~~ 111 (161)
T 2yxb_A 41 ALRDAGFEVVYTGLRQTPEQVAMAAVQEDVDVIGVSILN-G-------AHLHLMKRLMAKLRELGADDIPVVLGGTI-PI 111 (161)
T ss_dssp HHHHTTCEEECCCSBCCHHHHHHHHHHTTCSEEEEEESS-S-------CHHHHHHHHHHHHHHTTCTTSCEEEEECC-CH
T ss_pred HHHHCCCEEEECCCCCCHHHHHHHHHhcCCCEEEEEeec-h-------hhHHHHHHHHHHHHhcCCCCCEEEEeCCC-ch
Confidence 34566777662 12244443 45567899999885442 1 223344444433321 25888887776 56
Q ss_pred HHHHHHHHcCcceeee
Q 020013 179 RGYVAALSLGAQGICL 194 (332)
Q Consensus 179 ~~v~~al~~GA~gV~~ 194 (332)
++...+-..|+|++..
T Consensus 112 ~~~~~l~~~G~d~v~~ 127 (161)
T 2yxb_A 112 PDLEPLRSLGIREIFL 127 (161)
T ss_dssp HHHHHHHHTTCCEEEC
T ss_pred hcHHHHHHCCCcEEEC
Confidence 7776677899998763
|
| >2pz0_A Glycerophosphoryl diester phosphodiesterase; glycerophosphodiester phosphodiesterase, T. tengcongensis; 1.91A {Thermoanaerobacter tengcongensis} | Back alignment and structure |
|---|
Probab=90.46 E-value=1.1 Score=39.10 Aligned_cols=57 Identities=28% Similarity=0.365 Sum_probs=46.4
Q ss_pred HHHHHhcCCcEEEEccCCCcHHHHHHHHhCCCEEEE-ecCCHHHHHHHHHcCCCEEEE
Q 020013 80 IKAILSEKVAVLQVSWGEYSEELVLEAHSAGVKVVP-QVGSFDEARKAVNAGVDAIIV 136 (332)
Q Consensus 80 ~~~~~~~~~~~I~~~~g~~~~~~i~~~~~~g~~v~~-~v~s~~~a~~a~~~g~D~ivv 136 (332)
.+.+.+.+++.+........+++++.+++.|++|.. ++.+.++.+.+.+.|+|+|+.
T Consensus 181 ~~~~~~~~~~~i~~~~~~~~~~~v~~~~~~G~~v~~wTvn~~~~~~~l~~~GvdgIiT 238 (252)
T 2pz0_A 181 WHMALRMEAYSLHPFYFNIIPELVEGCKKNGVKLFPWTVDRKEDMERMIKAGVDGIIT 238 (252)
T ss_dssp HHHHHHTTCSEEEEBGGGCCHHHHHHHHHTTCEECCBCCCSHHHHHHHHHHTCSEEEE
T ss_pred HHHHHHcCCeEEecchhcCCHHHHHHHHHCCCEEEEECCCCHHHHHHHHHcCCCEEEc
Confidence 345566788888886555567899999999999875 577899999999999999987
|
| >1kbi_A Cytochrome B2, L-LCR; flavocytochrome B2, electron transfer, oxidoreductase; HET: HEM FMN; 2.30A {Saccharomyces cerevisiae} SCOP: c.1.4.1 d.120.1.1 PDB: 1fcb_A* 1lco_A* 1ldc_A* 1sze_A* 2oz0_A* 1szf_A* 1szg_A* 1ltd_A* 1kbj_A* 1qcw_A* 3ks0_A* | Back alignment and structure |
|---|
Probab=90.45 E-value=2 Score=41.82 Aligned_cols=81 Identities=19% Similarity=0.150 Sum_probs=57.7
Q ss_pred HHHHHHHhhcCCcEEEEeecCCCCHHHHHHHHhcCCcEEEEc--cCC-----Cc-HHHHHH----HHh----CCCEEEE-
Q 020013 53 DLIRKTRSLTERPFGVGVVLAFPHNENIKAILSEKVAVLQVS--WGE-----YS-EELVLE----AHS----AGVKVVP- 115 (332)
Q Consensus 53 ~~i~~~r~~~~~p~gvnl~~~~~~~~~~~~~~~~~~~~I~~~--~g~-----~~-~~~i~~----~~~----~g~~v~~- 115 (332)
+.++.+|+.++.|+.+..+.. .+....+.+.|+|+|.++ .|. .+ .+.+.. +++ ..++|+.
T Consensus 333 ~~i~~lr~~~~~PvivKgv~~---~e~A~~a~~aGad~I~vs~hgG~~~d~~~~~~~~l~~v~~~v~~~~~~~~ipVia~ 409 (511)
T 1kbi_A 333 KDIEELKKKTKLPIVIKGVQR---TEDVIKAAEIGVSGVVLSNHGGRQLDFSRAPIEVLAETMPILEQRNLKDKLEVFVD 409 (511)
T ss_dssp HHHHHHHHHCSSCEEEEEECS---HHHHHHHHHTTCSEEEECCTTTTSSTTCCCHHHHHHHHHHHHHTTTCBTTBEEEEE
T ss_pred HHHHHHHHHhCCcEEEEeCCC---HHHHHHHHHcCCCEEEEcCCCCccCCCCCchHHHHHHHHHHHHhhccCCCcEEEEE
Confidence 457888888889998875442 456778889999999983 331 11 123333 321 2578885
Q ss_pred -ecCCHHHHHHHHHcCCCEEEE
Q 020013 116 -QVGSFDEARKAVNAGVDAIIV 136 (332)
Q Consensus 116 -~v~s~~~a~~a~~~g~D~ivv 136 (332)
.+.+..++.+++..|||+|.+
T Consensus 410 GGI~~g~Dv~kaLalGAdaV~i 431 (511)
T 1kbi_A 410 GGVRRGTDVLKALCLGAKGVGL 431 (511)
T ss_dssp SSCCSHHHHHHHHHHTCSEEEE
T ss_pred CCCCCHHHHHHHHHcCCCEEEE
Confidence 477999999999999999988
|
| >2fiq_A Putative tagatose 6-phosphate kinase 1; structural genomics, PSI, protein structure initiative, NEW research center for structural genomics; 2.25A {Escherichia coli} SCOP: c.1.10.7 | Back alignment and structure |
|---|
Probab=90.45 E-value=4.3 Score=38.28 Aligned_cols=176 Identities=14% Similarity=0.113 Sum_probs=109.9
Q ss_pred CCCcHHHHHHHHhCC---Cceeec-----C----CCCCC--HHHHHHHHHHHHhhcCCc---EEEEeecCCCC-------
Q 020013 21 DISGPELVAAVANAG---GLGLLR-----A----PDWEA--PDYLRDLIRKTRSLTERP---FGVGVVLAFPH------- 76 (332)
Q Consensus 21 g~s~~~la~avs~aG---glG~i~-----~----~~~~~--~e~~~~~i~~~r~~~~~p---~gvnl~~~~~~------- 76 (332)
...+++.+.++-++. ...+|- . ++|.. ++.+...+..+.+..+.| +.+++=--.+.
T Consensus 20 n~~n~e~i~Ail~aAee~~sPVIi~~s~~~v~~~gGY~g~~~~~~~~~v~~~A~~~~vP~~~VaLHlDHg~~~~w~~~~~ 99 (420)
T 2fiq_A 20 CSAHPLVIEAALAFDRNSTRKVLIEATSNQVNQFGGYTGMTPADFREFVFAIADKVGFARERIILGGDHLGPNCWQQENV 99 (420)
T ss_dssp CCCCHHHHHHHHHHTTTSCCCEEEEEETTTBSTTCTTTTBCHHHHHHHHHHHHHHHTCCGGGEEEEEEEESSGGGTTSBH
T ss_pred ccCCHHHHHHHHHHHHHcCCCEEEEcChhhhhhccCCCCCCHHHHHHHHHHHHHHcCcCcceEEEECCCCCCccccccch
Confidence 456888888877653 334441 0 12444 788888887776555666 77765221111
Q ss_pred -------HHHHHHHHhcCCcEEEEccCC-----C---cHHH--------HHHHHhC-------------CCE--------
Q 020013 77 -------NENIKAILSEKVAVLQVSWGE-----Y---SEEL--------VLEAHSA-------------GVK-------- 112 (332)
Q Consensus 77 -------~~~~~~~~~~~~~~I~~~~g~-----~---~~~~--------i~~~~~~-------------g~~-------- 112 (332)
.+.+..+++.|..-|.+.... + ..++ ++.+++. |..
T Consensus 100 ~~am~~a~e~i~~aI~aGFtSVMiD~S~~~~~~~~pl~eNi~~~rt~elv~~Ah~~~~~~~eaElG~vgG~Ev~v~~~~~ 179 (420)
T 2fiq_A 100 DAAMEKSVELVKAYVRAGFSKIHLDASMSCAGDPIPLAPETVAERAAVLCFAAESVATDCQREQLSYVIGTEVPVPGGEA 179 (420)
T ss_dssp HHHHHHHHHHHHHHHHTTCCEEEECCCSCCBTCCSSCCHHHHHHHHHHHHHHHHHHCCHHHHHHCEEEEECSSCC-----
T ss_pred hhhhhhHHHHHHHHHHhCCCEEEECCCCCCCCCCCCccHHHHHHHHHHHHHHHHHHcccCCcccceEEeeeecCCCCCcc
Confidence 156778889999999886332 1 2232 3444442 111
Q ss_pred E-E--EecCCHHHHHHHH--------HcCCCE-------EEEe-cCCCCcccCCCCchhhhHHHHHHHhCCCCCc-EEe-
Q 020013 113 V-V--PQVGSFDEARKAV--------NAGVDA-------IIVQ-GREAGGHVIGQDGLISLLPMVVDLIGDRDIP-IIA- 171 (332)
Q Consensus 113 v-~--~~v~s~~~a~~a~--------~~g~D~-------ivv~-G~eaGGh~~~~~~~~~ll~~i~~~~~~~~iP-via- 171 (332)
. . ...+++++|+... +.|+|. +.++ |.+-|-. ..+.-.+..+.++.+.+ ++| ++.
T Consensus 180 ~~~~~~~~T~PeeA~~Fve~~~~~~~~tGvd~~~~~vi~LAV~iGt~HG~y-~~~~ld~e~l~~I~~~v---~~P~LVle 255 (420)
T 2fiq_A 180 SAIQSVHITHVEDAANTLRTHQKAFIARGLTEALTRVIAIVVQPGVEFDHS-NIIHYQPQEAQALAQWI---ENTRMVYE 255 (420)
T ss_dssp -----CCCCCHHHHHHHHHHHHHHHHTTTCHHHHHTEEEEECCCSCEECSS-CEECCCGGGGHHHHHHH---TTSSCEEE
T ss_pred cccCCCCCCCHHHHHHHHHHHHHHHHhhCCCcccccceEEEEeCCccCCCC-CCCCcCHHHHHHHHHhc---CCCCEEEe
Confidence 0 1 1157899998866 479998 6653 4332222 11223478889999888 679 777
Q ss_pred ---ecCcCCHHHHHHHHHcCcceeeeccccccC
Q 020013 172 ---AGGIVDARGYVAALSLGAQGICLGTRFVAS 201 (332)
Q Consensus 172 ---aGGI~~~~~v~~al~~GA~gV~~GT~fl~t 201 (332)
+.|+ +.+++.+++.+|..-+=+||.+-..
T Consensus 256 ~HGgSg~-~~e~l~~~v~~Gi~kiNV~t~l~~a 287 (420)
T 2fiq_A 256 AHSTDYQ-TRTAYWELVRDHFAILKVGPALTFA 287 (420)
T ss_dssp ESCCTTC-CHHHHHHHHHTTEEEEEECHHHHHH
T ss_pred cCCCCCC-CHHHHHHHHHcCCCEEEECHHHHHH
Confidence 4467 6788999999999999999986544
|
| >3qz6_A HPCH/HPAI aldolase; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomics, MCSG; 2.00A {Desulfitobacterium hafniense} SCOP: c.1.12.0 | Back alignment and structure |
|---|
Probab=90.44 E-value=3.6 Score=36.24 Aligned_cols=188 Identities=14% Similarity=0.100 Sum_probs=104.2
Q ss_pred cchhhcCCccceecCCCCCCC-CcHHHHHHHHhCCCceeec-CCC-CCCHHHHHHHHHHHHhhcCCcEEEEeecCCCCHH
Q 020013 2 GWRGMLGFEYGIVQAPLGPDI-SGPELVAAVANAGGLGLLR-APD-WEAPDYLRDLIRKTRSLTERPFGVGVVLAFPHNE 78 (332)
Q Consensus 2 ~~~~~l~~~~Pii~apM~~g~-s~~~la~avs~aGglG~i~-~~~-~~~~e~~~~~i~~~r~~~~~p~gvnl~~~~~~~~ 78 (332)
.|.+.|.-..|++..=+ .. ++|+.+..+..+|.=-++- ... ..+.+.+...+...+. ...+.-|-+ +..+..
T Consensus 5 ~~k~~l~~g~~~~g~~~--~~~~~p~~~e~a~~~g~D~vilDlEhav~~~~k~~~~l~a~~~-~~~~~~VRV--n~~~~~ 79 (261)
T 3qz6_A 5 FLKKKLSAGKSVVGTML--NLVYNPDIVRIYAEAGLDYFIVDCEHAAYTFREINHLVSVAKN-AGVSVLVRI--PQVDRA 79 (261)
T ss_dssp CHHHHHHTTCCEEEEEE--SSCCCTTHHHHHHHTTCSEEEEESSSSCCCHHHHHHHHHHHHH-HTCEEEEEC--SSCCHH
T ss_pred HHHHHHHCCCCEEEEEE--ecCCCHHHHHHHhcCCcCEEEEeccCCCCCHHHHHHHHHHHhh-cCCeEEEEe--CCCCHH
Confidence 45555554567763333 34 7788888887777533331 221 1244555555555442 233333332 333445
Q ss_pred HHHHHHhcCCcEEEEccCCCcHHH---HHHHH-----------------------------hCCCEEEEecCCHHHHHHH
Q 020013 79 NIKAILSEKVAVLQVSWGEYSEEL---VLEAH-----------------------------SAGVKVVPQVGSFDEARKA 126 (332)
Q Consensus 79 ~~~~~~~~~~~~I~~~~g~~~~~~---i~~~~-----------------------------~~g~~v~~~v~s~~~a~~a 126 (332)
.++.+++.|++.|.+..=..+.+. ++.++ ...++++..+-+++-...+
T Consensus 80 di~~~ld~G~~gI~lP~v~saed~~~~~~~~~~~p~G~Rg~~~~r~~~~g~~~~~~y~~~~~~~~~v~~mIEt~~av~~~ 159 (261)
T 3qz6_A 80 HVQRLLDIGAEGFMIPGVQSAETMRETVRLAKYPPLGERGVGGSIVTDFKPVNWAEWVQERNDEIFIMAQIEHVKAVEDI 159 (261)
T ss_dssp HHHHHHHHTCCEEEETTCCSHHHHHHHHHHHSCTTTCCCCCCCGGGGTTCCCCHHHHHHHHHTTCEEEEEECCHHHHHTH
T ss_pred HHHHHHhcCCCEEEECCcCCHHHHHHHHHHhccCCCCCcCcccchhhhccccchhhHHhcCCCCeEEEEEECCHHHHHHH
Confidence 688888999999998753323322 22221 1246888888887755543
Q ss_pred HH----cCCCEEEEecC----CCCcccCCC--CchhhhHHHHHHHhCCCCCcEEeecCcCCHHHH-HHHHHcCcceeeec
Q 020013 127 VN----AGVDAIIVQGR----EAGGHVIGQ--DGLISLLPMVVDLIGDRDIPIIAAGGIVDARGY-VAALSLGAQGICLG 195 (332)
Q Consensus 127 ~~----~g~D~ivv~G~----eaGGh~~~~--~~~~~ll~~i~~~~~~~~iPviaaGGI~~~~~v-~~al~~GA~gV~~G 195 (332)
.+ .++|++.+-.. +. |+.... ......+.++..+....++|+-..++ +++.+ ..++.+|.+.+.+|
T Consensus 160 ~eIaa~~~vd~l~iG~~DL~~~l-g~~~~~~~p~v~~a~~~iv~aa~aaG~~~g~~~~--~~~~~~~~~~~~G~~~~s~~ 236 (261)
T 3qz6_A 160 DSILAVQGVDAVIFGPRDLSNDL-GIIGQTEHPKVYECYEKVYRAADRQGVVKGFFTA--ADAAKMGWAVERGAQMLLWS 236 (261)
T ss_dssp HHHHTSTTCCEEEECHHHHHHHT-TCTTCTTCHHHHHHHHHHHHHHHHHTCEEEEEES--SCGGGGHHHHHTTCCEEEEE
T ss_pred HHHhCCCCCCEEEECHHHHHHHh-CCCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEeC--CHHHHHHHHHHCCCCEEEEh
Confidence 22 47999988221 11 221111 12233444444433222567544433 78888 88899999999998
Q ss_pred cc
Q 020013 196 TR 197 (332)
Q Consensus 196 T~ 197 (332)
+-
T Consensus 237 ~D 238 (261)
T 3qz6_A 237 GD 238 (261)
T ss_dssp EH
T ss_pred hH
Confidence 64
|
| >3eoo_A Methylisocitrate lyase; seattle structural genomics center for infectious disease, ssgcid; 2.90A {Burkholderia pseudomallei 1655} SCOP: c.1.12.7 | Back alignment and structure |
|---|
Probab=90.33 E-value=2.4 Score=38.20 Aligned_cols=93 Identities=14% Similarity=0.075 Sum_probs=60.7
Q ss_pred HHHHHHh-CCCEEEEecCCHHHHHHHHHcCCCEEEEecCCC----CcccCCC-Cch---hhhHHHHHHHhCCCCCcEEee
Q 020013 102 LVLEAHS-AGVKVVPQVGSFDEARKAVNAGVDAIIVQGREA----GGHVIGQ-DGL---ISLLPMVVDLIGDRDIPIIAA 172 (332)
Q Consensus 102 ~i~~~~~-~g~~v~~~v~s~~~a~~a~~~g~D~ivv~G~ea----GGh~~~~-~~~---~~ll~~i~~~~~~~~iPviaa 172 (332)
.++.+++ ....+++.+.+.-.|+.+.++|.|+|.+.|... -|+.+.. .+. ...+..|.+.. ++||++.
T Consensus 13 ~lr~l~~~~~~i~~~~a~D~~sA~l~e~aGf~ai~vs~~s~a~~~~G~pD~~~vt~~em~~~~~~I~r~~---~~PviaD 89 (298)
T 3eoo_A 13 KFRAAVAAEQPLQVVGAITAYAAKMAEAVGFKAVYLSGGGVAANSLGIPDLGISTMDDVLVDANRITNAT---NLPLLVD 89 (298)
T ss_dssp HHHHHHHHSSSEEEEECSSHHHHHHHHHHTCSCEEECHHHHHHHTTCCCSSSCCCHHHHHHHHHHHHHHC---CSCEEEE
T ss_pred HHHHHHhCCCcEEEecCCCHHHHHHHHHcCCCEEEECcHHHHHHhcCCCCCCCCCHHHHHHHHHHHHhhc---CCeEEEE
Confidence 3444444 457778899999999999999999999976321 2443222 222 33445555555 7999986
Q ss_pred c--CcCCHHH----HHHHHHcCcceeeeccc
Q 020013 173 G--GIVDARG----YVAALSLGAQGICLGTR 197 (332)
Q Consensus 173 G--GI~~~~~----v~~al~~GA~gV~~GT~ 197 (332)
+ |-+++.+ +..+.+.||+||.+=-.
T Consensus 90 ~d~Gyg~~~~v~~~v~~l~~aGaagv~iEDq 120 (298)
T 3eoo_A 90 IDTGWGGAFNIARTIRSFIKAGVGAVHLEDQ 120 (298)
T ss_dssp CTTCSSSHHHHHHHHHHHHHTTCSEEEEECB
T ss_pred CCCCCCCHHHHHHHHHHHHHhCCeEEEECCC
Confidence 4 3335544 45667799999987443
|
| >2ze3_A DFA0005; organic waste LEFT-OVER decomposition, alkaliphilic, ICL/PEPM superfamily, alpha-ketoglutarate LIG isomerase; HET: AKG; 1.65A {Deinococcus ficus} | Back alignment and structure |
|---|
Probab=90.13 E-value=1.6 Score=38.90 Aligned_cols=88 Identities=24% Similarity=0.234 Sum_probs=58.9
Q ss_pred HHHHHhCCCEEEEecCCHHHHHHHHHcCCCEEEEecCCC---CcccCCC-Cc---hhhhHHHHHHHhCCCCCcEEeecC-
Q 020013 103 VLEAHSAGVKVVPQVGSFDEARKAVNAGVDAIIVQGREA---GGHVIGQ-DG---LISLLPMVVDLIGDRDIPIIAAGG- 174 (332)
Q Consensus 103 i~~~~~~g~~v~~~v~s~~~a~~a~~~g~D~ivv~G~ea---GGh~~~~-~~---~~~ll~~i~~~~~~~~iPviaaGG- 174 (332)
++.+++.+ .+++.+.+.-.|+.+.++|.|+|.+.|... =|+.+.. .+ ....++.|.+.. ++||++..-
T Consensus 10 lr~l~~~~-i~~~~a~D~~sA~~~~~aG~~ai~vsg~s~a~~~G~pD~~~vt~~em~~~~~~I~~~~---~~pviaD~d~ 85 (275)
T 2ze3_A 10 FHALHQTG-FLLPNAWDVASARLLEAAGFTAIGTTSAGIAHARGRTDGQTLTRDEMGREVEAIVRAV---AIPVNADIEA 85 (275)
T ss_dssp HHHHHHHC-EEECEESSHHHHHHHHHHTCSCEEECHHHHHHHSCCCSSSSSCHHHHHHHHHHHHHHC---SSCEEEECTT
T ss_pred HHHHhhCC-eeEecccCHHHHHHHHHcCCCEEEECcHHHHHhCCCCCCCCCCHHHHHHHHHHHHhhc---CCCEEeecCC
Confidence 34444446 778889999999999999999999975321 2443221 22 233455555555 689998753
Q ss_pred -cC-CH----HHHHHHHHcCcceeee
Q 020013 175 -IV-DA----RGYVAALSLGAQGICL 194 (332)
Q Consensus 175 -I~-~~----~~v~~al~~GA~gV~~ 194 (332)
-+ ++ +++..++++||+||.+
T Consensus 86 Gyg~~~~~~~~~v~~l~~aGaagv~i 111 (275)
T 2ze3_A 86 GYGHAPEDVRRTVEHFAALGVAGVNL 111 (275)
T ss_dssp CSSSSHHHHHHHHHHHHHTTCSEEEE
T ss_pred CCCCCHHHHHHHHHHHHHcCCcEEEE
Confidence 32 44 4566778899999988
|
| >3ajx_A 3-hexulose-6-phosphate synthase; HPS, OMPDC suprafamily, LYA; 1.60A {Mycobacterium gastri} | Back alignment and structure |
|---|
Probab=90.12 E-value=3.4 Score=34.46 Aligned_cols=122 Identities=9% Similarity=0.026 Sum_probs=67.9
Q ss_pred ccceecCCCCCCCCc-HHH-HHHHHhCCCceeecCCCCCCHHHHHHHHHHHHhhcCCcEEEEeecCCCCHHHHHHHHhcC
Q 020013 10 EYGIVQAPLGPDISG-PEL-VAAVANAGGLGLLRAPDWEAPDYLRDLIRKTRSLTERPFGVGVVLAFPHNENIKAILSEK 87 (332)
Q Consensus 10 ~~Pii~apM~~g~s~-~~l-a~avs~aGglG~i~~~~~~~~e~~~~~i~~~r~~~~~p~gvnl~~~~~~~~~~~~~~~~~ 87 (332)
+.|++.+-|. .+ |+. +....++|.=++.... ....+.+.+.++.+++. +.++|+.+.......+.++.+.+.+
T Consensus 53 ~~~i~~~l~~---~di~~~~~~~a~~~Gad~v~vh~-~~~~~~~~~~~~~~~~~-g~~~gv~~~s~~~p~~~~~~~~~~g 127 (207)
T 3ajx_A 53 DKIVFADMKT---MDAGELEADIAFKAGADLVTVLG-SADDSTIAGAVKAAQAH-NKGVVVDLIGIEDKATRAQEVRALG 127 (207)
T ss_dssp TSEEEEEEEE---CSCHHHHHHHHHHTTCSEEEEET-TSCHHHHHHHHHHHHHH-TCEEEEECTTCSSHHHHHHHHHHTT
T ss_pred CCeEEEEEEe---cCccHHHHHHHHhCCCCEEEEec-cCChHHHHHHHHHHHHc-CCceEEEEecCCChHHHHHHHHHhC
Confidence 4688877774 24 544 6777788876665322 23445556666666543 4445554431111133455566678
Q ss_pred CcEE-EEc------cCCCcH-HHHHHHHhCCCEEEEecC-CHHHHHHHHHcCCCEEEE
Q 020013 88 VAVL-QVS------WGEYSE-ELVLEAHSAGVKVVPQVG-SFDEARKAVNAGVDAIIV 136 (332)
Q Consensus 88 ~~~I-~~~------~g~~~~-~~i~~~~~~g~~v~~~v~-s~~~a~~a~~~g~D~ivv 136 (332)
+|.| ... .|..+. +.++.+....++++..-+ +++.+..+.++|+|+|++
T Consensus 128 ~d~v~~~~~~~~~~~g~~~~~~~i~~~~~~~~pi~v~GGI~~~~~~~~~~aGad~vvv 185 (207)
T 3ajx_A 128 AKFVEMHAGLDEQAKPGFDLNGLLAAGEKARVPFSVAGGVKVATIPAVQKAGAEVAVA 185 (207)
T ss_dssp CSEEEEECCHHHHTSTTCCTHHHHHHHHHHTSCEEEESSCCGGGHHHHHHTTCSEEEE
T ss_pred CCEEEEEecccccccCCCchHHHHHHhhCCCCCEEEECCcCHHHHHHHHHcCCCEEEE
Confidence 9998 431 232222 344444432455543322 366777788999999998
|
| >3o6c_A PNP synthase, pyridoxine 5'-phosphate synthase; structural genomics, IDP90671, center for structural genomic infectious diseases; HET: MSE; 1.87A {Campylobacter jejuni subsp} SCOP: c.1.24.0 PDB: 3o6d_A* | Back alignment and structure |
|---|
Probab=90.10 E-value=4.1 Score=35.59 Aligned_cols=111 Identities=12% Similarity=0.033 Sum_probs=70.5
Q ss_pred CCcHHHHHHHHhCCCceeecCCCCCCHHH-HHHHHHHHHhhcCCcEEEEeecCCCCHHHHHHHHhcCCcEEEEc------
Q 020013 22 ISGPELVAAVANAGGLGLLRAPDWEAPDY-LRDLIRKTRSLTERPFGVGVVLAFPHNENIKAILSEKVAVLQVS------ 94 (332)
Q Consensus 22 ~s~~~la~avs~aGglG~i~~~~~~~~e~-~~~~i~~~r~~~~~p~gvnl~~~~~~~~~~~~~~~~~~~~I~~~------ 94 (332)
..+|--++.++..+|=|+..-.+- +-.. -...+..+++....|+.+-... .++.++.+++.+|+.|++-
T Consensus 24 ~Pdpv~aA~~ae~aGdgITvHlRe-DrRHI~d~Dv~~L~~~~~~~lNlE~a~---t~emi~ial~~kP~~vtLVPEkreE 99 (260)
T 3o6c_A 24 DPDLLEAAFIVARHGDQITLHVRE-DRRHAQDFDLENIIKFCKSPVNLECAL---NDEILNLALKLKPHRVTLVPEKREE 99 (260)
T ss_dssp CSCHHHHHHHHHHHSSEEEEECCT-TCSSSCHHHHHHHHHHCSSCEEEEECS---CHHHHHHHHHHCCSEEEECCCSGGG
T ss_pred CCCHHHHHHHHHHhCCeEEEeeCC-CcccCCHHHHHHHHHHcCCCEEeecCC---CHHHHHHHHHcCCCEEEECCCCCCc
Confidence 356666666665444555432211 1000 1223455555555666554332 4789999999999998763
Q ss_pred ----cCC-----CcHHHHHHHHhCCCEEEEecC-CHHHHHHHHHcCCCEEEE
Q 020013 95 ----WGE-----YSEELVLEAHSAGVKVVPQVG-SFDEARKAVNAGVDAIIV 136 (332)
Q Consensus 95 ----~g~-----~~~~~i~~~~~~g~~v~~~v~-s~~~a~~a~~~g~D~ivv 136 (332)
.|. ...++++++++.|+.|-.-+. +++....+.+.|+|.|=+
T Consensus 100 ~TTegGldv~~~~L~~~i~~L~~~GIrVSLFIDpd~~qi~aA~~~GAd~IEL 151 (260)
T 3o6c_A 100 LTTEGGLCLNHAKLKQSIEKLQNANIEVSLFINPSLEDIEKSKILKAQFIEL 151 (260)
T ss_dssp BCTTSSBCTTCTTHHHHHHHHHHTTCEEEEEECSCHHHHHHHHHTTCSEEEE
T ss_pred cCCCCChhhCHHHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHhCCCEEEE
Confidence 111 124688999999998866554 678888999999999977
|
| >2qiw_A PEP phosphonomutase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: P6G; 1.80A {Corynebacterium glutamicum atcc 13032} | Back alignment and structure |
|---|
Probab=90.00 E-value=1.9 Score=37.96 Aligned_cols=90 Identities=20% Similarity=0.244 Sum_probs=61.1
Q ss_pred HHHHHHhCC-CEEEEecCCHHHHHHHHHcCCCEEEEecCCC---CcccCC-CCch---hhhHHHHHHHhCCCCCcEEeec
Q 020013 102 LVLEAHSAG-VKVVPQVGSFDEARKAVNAGVDAIIVQGREA---GGHVIG-QDGL---ISLLPMVVDLIGDRDIPIIAAG 173 (332)
Q Consensus 102 ~i~~~~~~g-~~v~~~v~s~~~a~~a~~~g~D~ivv~G~ea---GGh~~~-~~~~---~~ll~~i~~~~~~~~iPviaaG 173 (332)
.++.+++.+ ..+++.+.+.-.|+.+.++|+|+|.+.+... =|+.+. ..+. +..++.|.+.. ++||++..
T Consensus 11 ~lr~l~~~~~~i~~~~ayD~~sA~~~~~aG~dai~vg~~s~a~~~G~pD~~~vt~~em~~~~~~I~r~~---~~pviaD~ 87 (255)
T 2qiw_A 11 KFASDHESGKLLVLPTVWDTWSAGLVEEAGFSGLTIGSHPVADATGSSDGENMNFADYMAVVKKITSAV---SIPVSVDV 87 (255)
T ss_dssp HHHHHHHTCCCEECCEESSHHHHHHHHHTTCSCEEECHHHHHHHTTCCTTTCSCHHHHHHHHHHHHHHC---SSCEEEEC
T ss_pred HHHHHHhCCCcEEEecCcCHHHHHHHHHcCCCEEEEChHHHHHhCCCCCCCCcCHHHHHHHHHHHHhcC---CCCEEecc
Confidence 345555554 5667889999999999999999999965311 234322 1222 33445555555 68999864
Q ss_pred C--cCC--HHHHHHHHHcCcceeee
Q 020013 174 G--IVD--ARGYVAALSLGAQGICL 194 (332)
Q Consensus 174 G--I~~--~~~v~~al~~GA~gV~~ 194 (332)
- -++ .+++..+++.||+||.+
T Consensus 88 ~~Gyg~~~~~~~~~l~~aGa~gv~i 112 (255)
T 2qiw_A 88 ESGYGLSPADLIAQILEAGAVGINV 112 (255)
T ss_dssp TTCTTCCHHHHHHHHHHTTCCEEEE
T ss_pred CCCcCcHHHHHHHHHHHcCCcEEEE
Confidence 2 222 67888999999999988
|
| >1srr_A SPO0F, sporulation response regulatory protein; aspartate pocket, two component system; 1.90A {Bacillus subtilis} SCOP: c.23.1.1 PDB: 1pey_A 3q15_C 2ftk_E* 1fsp_A 1nat_A 1pux_A 2fsp_A 2jvj_A 2jvk_A 2jvi_A 1f51_E | Back alignment and structure |
|---|
Probab=90.00 E-value=4 Score=30.16 Aligned_cols=82 Identities=15% Similarity=0.047 Sum_probs=56.6
Q ss_pred HHHHhCCCEEEEecCCHHHHHHHH-HcCCCEEEEecCCCCcccCCCCchhhhHHHHHHHhCCCCCcEEeecCcCCHHHHH
Q 020013 104 LEAHSAGVKVVPQVGSFDEARKAV-NAGVDAIIVQGREAGGHVIGQDGLISLLPMVVDLIGDRDIPIIAAGGIVDARGYV 182 (332)
Q Consensus 104 ~~~~~~g~~v~~~v~s~~~a~~a~-~~g~D~ivv~G~eaGGh~~~~~~~~~ll~~i~~~~~~~~iPviaaGGI~~~~~v~ 182 (332)
..++..|..+. .+.+.+++.... ...+|.+++.-.-. ....+.++..+++... ++|+|.-.+-.+.+...
T Consensus 21 ~~l~~~~~~v~-~~~~~~~a~~~~~~~~~dlvl~D~~l~------~~~g~~~~~~l~~~~~--~~~ii~~s~~~~~~~~~ 91 (124)
T 1srr_A 21 EVFNKEGYQTF-QAANGLQALDIVTKERPDLVLLDMKIP------GMDGIEILKRMKVIDE--NIRVIIMTAYGELDMIQ 91 (124)
T ss_dssp HHHHTTTCEEE-EESSHHHHHHHHHHHCCSEEEEESCCT------TCCHHHHHHHHHHHCT--TCEEEEEESSCCHHHHH
T ss_pred HHHHHCCcEEE-EeCCHHHHHHHHhccCCCEEEEecCCC------CCCHHHHHHHHHHhCC--CCCEEEEEccCchHHHH
Confidence 34455677765 677777776544 45799999853211 1133667777776532 68999888888888899
Q ss_pred HHHHcCcceeee
Q 020013 183 AALSLGAQGICL 194 (332)
Q Consensus 183 ~al~~GA~gV~~ 194 (332)
+++..|++++..
T Consensus 92 ~~~~~g~~~~l~ 103 (124)
T 1srr_A 92 ESKELGALTHFA 103 (124)
T ss_dssp HHHHHTCCCEEE
T ss_pred HHHhcChHhhcc
Confidence 999999987753
|
| >3hgj_A Chromate reductase; TIM barrel, oxidoreductase; HET: FMN; 2.00A {Thermus scotoductus} SCOP: c.1.4.0 PDB: 3hf3_A* | Back alignment and structure |
|---|
Probab=89.95 E-value=4.9 Score=36.86 Aligned_cols=86 Identities=16% Similarity=0.222 Sum_probs=59.5
Q ss_pred HHHHHHHHHhhc--CCcEEEEeecCC------CCH---HHHHHHHhcCCcEEEEccCC------------CcHHHHHHHH
Q 020013 51 LRDLIRKTRSLT--ERPFGVGVVLAF------PHN---ENIKAILSEKVAVLQVSWGE------------YSEELVLEAH 107 (332)
Q Consensus 51 ~~~~i~~~r~~~--~~p~gvnl~~~~------~~~---~~~~~~~~~~~~~I~~~~g~------------~~~~~i~~~~ 107 (332)
+.+.++.+|+.. +.|+++-+-... ..+ +.++.+.+.|+|+|+++.|. ...++++.++
T Consensus 205 ~~eiv~aVR~avG~d~pV~vRls~~~~~~~g~~~~~~~~la~~L~~~Gvd~i~vs~g~~~~~~~~~~~~~~~~~~~~~ir 284 (349)
T 3hgj_A 205 PLQVAQAVREVVPRELPLFVRVSATDWGEGGWSLEDTLAFARRLKELGVDLLDCSSGGVVLRVRIPLAPGFQVPFADAVR 284 (349)
T ss_dssp HHHHHHHHHHHSCTTSCEEEEEESCCCSTTSCCHHHHHHHHHHHHHTTCCEEEEECCCSCSSSCCCCCTTTTHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCceEEEEeccccccCCCCCHHHHHHHHHHHHHcCCCEEEEecCCcCcccccCCCccccHHHHHHHH
Confidence 567778888775 678888776432 112 23556667899999987421 1124566666
Q ss_pred h-CCCEEEEe--cCCHHHHHHHHHcC-CCEEEE
Q 020013 108 S-AGVKVVPQ--VGSFDEARKAVNAG-VDAIIV 136 (332)
Q Consensus 108 ~-~g~~v~~~--v~s~~~a~~a~~~g-~D~ivv 136 (332)
+ .+++|+.. +.+.+++.++++.| +|.|.+
T Consensus 285 ~~~~iPVi~~Ggi~t~e~a~~~l~~G~aD~V~i 317 (349)
T 3hgj_A 285 KRVGLRTGAVGLITTPEQAETLLQAGSADLVLL 317 (349)
T ss_dssp HHHCCEEEECSSCCCHHHHHHHHHTTSCSEEEE
T ss_pred HHcCceEEEECCCCCHHHHHHHHHCCCceEEEe
Confidence 5 37787754 56899999999998 999987
|
| >2v5b_A Triosephosphate isomerase; TIM, unfolding, monotctim, glycosome, gluconeogenesis, lipid synthesis, monomeric mutant, glycolysis, pentose shunt; 2.00A {Trypanosoma cruzi} | Back alignment and structure |
|---|
Probab=89.88 E-value=2.5 Score=36.87 Aligned_cols=122 Identities=20% Similarity=0.303 Sum_probs=71.0
Q ss_pred HHHHHHHHhcCCcEEEEc-------cCCCcHHH----HHHHHhCCCEEEEecCC-HHH-------------HHHHHH-cC
Q 020013 77 NENIKAILSEKVAVLQVS-------WGEYSEEL----VLEAHSAGVKVVPQVGS-FDE-------------ARKAVN-AG 130 (332)
Q Consensus 77 ~~~~~~~~~~~~~~I~~~-------~g~~~~~~----i~~~~~~g~~v~~~v~s-~~~-------------a~~a~~-~g 130 (332)
.+....+.+.|+++|.++ ||. ..+. ++.+.+.|+.++..++. .++ .+.+++ ..
T Consensus 71 ~~~~~mL~d~G~~~ViiGHSERR~~f~E-td~~v~~Kv~~Al~~GL~pI~CvGEtleereag~t~~vv~~Ql~~~l~~~~ 149 (244)
T 2v5b_A 71 ADALASLKDYGISWVVLGHSERRLYYGE-TNEIVAEKVAQACAAGFHVIVCVGETNEEREAGRTAAVVLTQLAAVAQKLS 149 (244)
T ss_dssp HHHHHHHHHTTCCEEEECCHHHHHHSCC-CHHHHHHHHHHHHHTTCEEEEEECCCHHHHHTTCHHHHHHHHHHHHHTTCC
T ss_pred CCCHHHHHHcCCCEEEeCchhhhhccCC-CHHHHHHHHHHHHHCCCeEEEEcCCcHHHHhcCCHHHHHHHHHHHHHhcCC
Confidence 344778889999999985 454 3444 44556789998888873 332 111221 12
Q ss_pred CC----EEEEe-cCCCCc--ccCCCC---chhhhHHHHHHH-hCC---CCCcEEeecCcCCHHHHHHHHHc-Ccceeeec
Q 020013 131 VD----AIIVQ-GREAGG--HVIGQD---GLISLLPMVVDL-IGD---RDIPIIAAGGIVDARGYVAALSL-GAQGICLG 195 (332)
Q Consensus 131 ~D----~ivv~-G~eaGG--h~~~~~---~~~~ll~~i~~~-~~~---~~iPviaaGGI~~~~~v~~al~~-GA~gV~~G 195 (332)
.+ .||+. ..-+=| .+..+. .....+++.... +.. .+++|+..|+| +++|+.+.++. ..||+.+|
T Consensus 150 ~~~~~~~vIAYEPvWAIGTG~~Atpe~aqevh~~IR~~l~~~~~~~va~~vrIlYGGSV-~~~N~~~l~~~~diDG~LVG 228 (244)
T 2v5b_A 150 KEAWSRVVIAYEPVWAIGTGKVATPQQAQEVHELLRRWVRSKLGTDIAAQLRILYGGSV-TAKNARTLYQMRDINGFLVG 228 (244)
T ss_dssp TGGGGGEEEEECCHHHHSSSCCCCHHHHHHHHHHHHHHHHHHHCHHHHHHCEEEECSCC-CHHHHHHHHTSTTCCEEEES
T ss_pred HHHcCCEEEEECCHHHhCCCCCCCHHHHHHHHHHHHHHHHHhcChhhcCcccEEEcCCC-CHhHHHHHhcCCCCCeeeec
Confidence 22 55542 222222 221110 112233321111 100 14899999999 89999999875 68999999
Q ss_pred ccccc
Q 020013 196 TRFVA 200 (332)
Q Consensus 196 T~fl~ 200 (332)
.+-|.
T Consensus 229 gASL~ 233 (244)
T 2v5b_A 229 GASLK 233 (244)
T ss_dssp GGGSS
T ss_pred hHHHH
Confidence 98765
|
| >3kcn_A Adenylate cyclase homolog; SGX, PSI 2, structural genomics, protein structure initiative; 2.45A {Rhodopirellula baltica} | Back alignment and structure |
|---|
Probab=89.88 E-value=4.1 Score=31.47 Aligned_cols=77 Identities=16% Similarity=0.057 Sum_probs=54.6
Q ss_pred CCCEEEEecCCHHHHHHHHHc-CC-CEEEEecCCCCcccCCCCchhhhHHHHHHHhCCCCCcEEeecCcCCHHHHHHHHH
Q 020013 109 AGVKVVPQVGSFDEARKAVNA-GV-DAIIVQGREAGGHVIGQDGLISLLPMVVDLIGDRDIPIIAAGGIVDARGYVAALS 186 (332)
Q Consensus 109 ~g~~v~~~v~s~~~a~~a~~~-g~-D~ivv~G~eaGGh~~~~~~~~~ll~~i~~~~~~~~iPviaaGGI~~~~~v~~al~ 186 (332)
.+..+. .+.+.+++...... .+ |.|++.-.-.+ ...+.++..+++... ++|||+..+-.+.+.+.+++.
T Consensus 26 ~~~~v~-~~~~~~~a~~~l~~~~~~dlvi~D~~l~~------~~g~~~~~~l~~~~~--~~~ii~~s~~~~~~~~~~~~~ 96 (151)
T 3kcn_A 26 FDFEVT-TCESGPEALACIKKSDPFSVIMVDMRMPG------MEGTEVIQKARLISP--NSVYLMLTGNQDLTTAMEAVN 96 (151)
T ss_dssp TTSEEE-EESSHHHHHHHHHHSCCCSEEEEESCCSS------SCHHHHHHHHHHHCS--SCEEEEEECGGGHHHHHHHHH
T ss_pred cCceEE-EeCCHHHHHHHHHcCCCCCEEEEeCCCCC------CcHHHHHHHHHhcCC--CcEEEEEECCCCHHHHHHHHH
Confidence 466655 67788888776654 44 99998533111 234677778776543 689988888878888999999
Q ss_pred cC-cceeee
Q 020013 187 LG-AQGICL 194 (332)
Q Consensus 187 ~G-A~gV~~ 194 (332)
.| ++++..
T Consensus 97 ~g~~~~~l~ 105 (151)
T 3kcn_A 97 EGQVFRFLN 105 (151)
T ss_dssp HTCCSEEEE
T ss_pred cCCeeEEEc
Confidence 99 888753
|
| >1oy0_A Ketopantoate hydroxymethyltransferase; domain swapping, structural genomics, PSI, protein structure initiative; 2.80A {Mycobacterium tuberculosis} SCOP: c.1.12.8 | Back alignment and structure |
|---|
Probab=89.83 E-value=4.8 Score=35.85 Aligned_cols=89 Identities=19% Similarity=0.136 Sum_probs=55.3
Q ss_pred HHHHHHhC-CCEEEEecCCHHHHHHHHHcCCCEEEEecCCCC----cccCC-CCch---hhhHHHHHHHhCCCCCc-EEe
Q 020013 102 LVLEAHSA-GVKVVPQVGSFDEARKAVNAGVDAIIVQGREAG----GHVIG-QDGL---ISLLPMVVDLIGDRDIP-IIA 171 (332)
Q Consensus 102 ~i~~~~~~-g~~v~~~v~s~~~a~~a~~~g~D~ivv~G~eaG----Gh~~~-~~~~---~~ll~~i~~~~~~~~iP-via 171 (332)
.++.+++. ...+++.+.+.-.|+.+.++|+|+|.+ |...+ |+.+. ..+. +...+.+++.. +.| |++
T Consensus 25 ~lr~~k~~g~~i~~~tayDa~sA~l~e~aG~d~ilv-GdSl~~~~lG~~dt~~vTldemi~h~~aV~r~~---~~~~vva 100 (281)
T 1oy0_A 25 HLQRWKADGHKWAMLTAYDYSTARIFDEAGIPVLLV-GDSAANVVYGYDTTVPISIDELIPLVRGVVRGA---PHALVVA 100 (281)
T ss_dssp HHHHHHHHTCCEEEEECCSHHHHHHHHTTTCCEEEE-CTTHHHHTTCCSSSSSCCGGGTHHHHHHHHHHC---TTSEEEE
T ss_pred HHHHHHhCCCcEEEEeCcCHHHHHHHHHcCCCEEEE-CHHHHHHHcCCCCCCCCCHHHHHHHHHHHHhcC---CCCeEEE
Confidence 34445544 466778899999999999999999976 53222 44322 1222 33445566555 444 555
Q ss_pred ecCcC----CHHH----HHHHHH-cCcceeee
Q 020013 172 AGGIV----DARG----YVAALS-LGAQGICL 194 (332)
Q Consensus 172 aGGI~----~~~~----v~~al~-~GA~gV~~ 194 (332)
.=+.+ ++++ +...+. .||++|-+
T Consensus 101 D~pfgsy~~s~~~a~~na~rl~~eaGa~aVkl 132 (281)
T 1oy0_A 101 DLPFGSYEAGPTAALAAATRFLKDGGAHAVKL 132 (281)
T ss_dssp ECCTTSSTTCHHHHHHHHHHHHHTTCCSEEEE
T ss_pred ECCCCcccCCHHHHHHHHHHHHHHhCCeEEEE
Confidence 44432 5655 455666 99999988
|
| >3o63_A Probable thiamine-phosphate pyrophosphorylase; thiamin biosynthesis, TIM barrel, transferase; 2.35A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=89.83 E-value=2.3 Score=37.08 Aligned_cols=105 Identities=17% Similarity=0.169 Sum_probs=65.1
Q ss_pred HHHHHHHHhcCCcEEEEccCC----------CcHHHH-------HHHHhCCCEEEEecCCHHHHHHHHHcCCCEEEEecC
Q 020013 77 NENIKAILSEKVAVLQVSWGE----------YSEELV-------LEAHSAGVKVVPQVGSFDEARKAVNAGVDAIIVQGR 139 (332)
Q Consensus 77 ~~~~~~~~~~~~~~I~~~~g~----------~~~~~i-------~~~~~~g~~v~~~v~s~~~a~~a~~~g~D~ivv~G~ 139 (332)
.+.++.+++.|++.|++---. ...++. +.+++.+++++.. ... ..+.+.|+|+|-+.
T Consensus 46 ~~~~~~al~~Gv~~vqlR~K~~~~~~~~~~l~~~~~~~~a~~l~~l~~~~~~~liIn-d~~---~lA~~~gAdGVHLg-- 119 (243)
T 3o63_A 46 AQFAEAALAGGVDIIQLRDKGSPGELRFGPLQARDELAACEILADAAHRYGALFAVN-DRA---DIARAAGADVLHLG-- 119 (243)
T ss_dssp HHHHHHHHHTTCSEEEECCTTCHHHHHHCSCCHHHHHHHHHHHHHHHHHTTCEEEEE-SCH---HHHHHHTCSEEEEC--
T ss_pred HHHHHHHHHCCCCEEEEccCCCCccccccCCCHHHHHHHHHHHHHHHHhhCCEEEEe-CHH---HHHHHhCCCEEEec--
Confidence 466788889999999994221 122322 2345678887764 223 33667899998661
Q ss_pred CCCcccCCCCchhhhHHHHHHHhCCCCCcEEeecCcCCHHHHHHHHHcCcceeeecccccc
Q 020013 140 EAGGHVIGQDGLISLLPMVVDLIGDRDIPIIAAGGIVDARGYVAALSLGAQGICLGTRFVA 200 (332)
Q Consensus 140 eaGGh~~~~~~~~~ll~~i~~~~~~~~iPviaaGGI~~~~~v~~al~~GA~gV~~GT~fl~ 200 (332)
..... ...+++.+. .-.+..--+.|.+++.++...|||-|.+|..|-.
T Consensus 120 -------~~dl~---~~~~r~~~~---~~~~iG~S~ht~~Ea~~A~~~GaDyI~vgpvf~T 167 (243)
T 3o63_A 120 -------QRDLP---VNVARQILA---PDTLIGRSTHDPDQVAAAAAGDADYFCVGPCWPT 167 (243)
T ss_dssp -------TTSSC---HHHHHHHSC---TTCEEEEEECSHHHHHHHHHSSCSEEEECCSSCC
T ss_pred -------CCcCC---HHHHHHhhC---CCCEEEEeCCCHHHHHHHhhCCCCEEEEcCccCC
Confidence 11111 233444332 1223333478999999999999999999987643
|
| >1o66_A 3-methyl-2-oxobutanoate hydroxymethyltransferase; structural genomics; HET: MSE; 1.75A {Neisseria meningitidis serogroup B} SCOP: c.1.12.8 PDB: 1o68_A* | Back alignment and structure |
|---|
Probab=89.79 E-value=3.3 Score=36.77 Aligned_cols=89 Identities=17% Similarity=0.096 Sum_probs=56.0
Q ss_pred HHHHHhC-CCEEEEecCCHHHHHHHHHcCCCEEEEecCCCC----cccCC-CCch---hhhHHHHHHHhCCCCCcEEeec
Q 020013 103 VLEAHSA-GVKVVPQVGSFDEARKAVNAGVDAIIVQGREAG----GHVIG-QDGL---ISLLPMVVDLIGDRDIPIIAAG 173 (332)
Q Consensus 103 i~~~~~~-g~~v~~~v~s~~~a~~a~~~g~D~ivv~G~eaG----Gh~~~-~~~~---~~ll~~i~~~~~~~~iPviaaG 173 (332)
++.+++. ...+++.+.+.-.|+.+.++|+|+|.+ |...+ |+.+. ..+. +...+.+++..+ ..||++.=
T Consensus 9 lr~~k~~g~~i~~~tayDa~sA~l~e~aG~d~ilv-GdSl~~~~lG~~dt~~vTldemi~h~~aV~r~~~--~~~vvaD~ 85 (275)
T 1o66_A 9 LQKMKAAGEKIAMLTAYESSFAALMDDAGVEMLLV-GDSLGMAVQGRKSTLPVSLRDMCYHTECVARGAK--NAMIVSDL 85 (275)
T ss_dssp HHHHHHHTCCEEEEECCSHHHHHHHHHTTCCEEEE-CTTHHHHTTCCSSSTTCCHHHHHHHHHHHHHHCS--SSEEEEEC
T ss_pred HHHHHhCCCcEEEEeCcCHHHHHHHHHcCCCEEEE-CHHHHHHHcCCCCCCCCCHHHHHHHHHHHHhhCC--CCeEEEEC
Confidence 4445544 466778899999999999999999976 53222 44322 1222 223445555542 35677774
Q ss_pred CcC----CHHH----HHHHHHcCcceeee
Q 020013 174 GIV----DARG----YVAALSLGAQGICL 194 (332)
Q Consensus 174 GI~----~~~~----v~~al~~GA~gV~~ 194 (332)
+.+ ++++ +..+++.||++|-+
T Consensus 86 pfgsy~~s~~~a~~na~rl~kaGa~aVkl 114 (275)
T 1o66_A 86 PFGAYQQSKEQAFAAAAELMAAGAHMVKL 114 (275)
T ss_dssp CTTSSSSCHHHHHHHHHHHHHTTCSEEEE
T ss_pred CCCCccCCHHHHHHHHHHHHHcCCcEEEE
Confidence 442 4544 44688899999987
|
| >2pl1_A Transcriptional regulatory protein PHOP; CHEY-like fold, response regulator, beryllium fluoride, transcription factor, activated, virulence; 1.90A {Escherichia coli} SCOP: c.23.1.1 PDB: 2pkx_A | Back alignment and structure |
|---|
Probab=89.74 E-value=4.6 Score=29.53 Aligned_cols=82 Identities=21% Similarity=0.131 Sum_probs=56.7
Q ss_pred HHHHhCCCEEEEecCCHHHHHHHH-HcCCCEEEEecCCCCcccCCCCchhhhHHHHHHHhCCCCCcEEeecCcCCHHHHH
Q 020013 104 LEAHSAGVKVVPQVGSFDEARKAV-NAGVDAIIVQGREAGGHVIGQDGLISLLPMVVDLIGDRDIPIIAAGGIVDARGYV 182 (332)
Q Consensus 104 ~~~~~~g~~v~~~v~s~~~a~~a~-~~g~D~ivv~G~eaGGh~~~~~~~~~ll~~i~~~~~~~~iPviaaGGI~~~~~v~ 182 (332)
+.+...|..+. .+.+.+++.... ...+|.+++.-.-. ....+.++.++++... .+|+|+-.+-.+.+...
T Consensus 18 ~~l~~~g~~v~-~~~~~~~a~~~~~~~~~dlil~D~~l~------~~~g~~~~~~l~~~~~--~~~ii~~s~~~~~~~~~ 88 (121)
T 2pl1_A 18 VQIQDAGHQVD-DAEDAKEADYYLNEHIPDIAIVDLGLP------DEDGLSLIRRWRSNDV--SLPILVLTARESWQDKV 88 (121)
T ss_dssp HHHHHTTCEEE-EESSHHHHHHHHHHSCCSEEEECSCCS------SSCHHHHHHHHHHTTC--CSCEEEEESCCCHHHHH
T ss_pred HHHhhcCCEEE-EeCCHHHHHHHHhccCCCEEEEecCCC------CCCHHHHHHHHHhcCC--CCCEEEEecCCCHHHHH
Confidence 44556677654 677777776654 45689998842211 1133667777776432 68999888887888999
Q ss_pred HHHHcCcceeee
Q 020013 183 AALSLGAQGICL 194 (332)
Q Consensus 183 ~al~~GA~gV~~ 194 (332)
.++..||+++..
T Consensus 89 ~~~~~g~~~~l~ 100 (121)
T 2pl1_A 89 EVLSAGADDYVT 100 (121)
T ss_dssp HHHHTTCSEEEE
T ss_pred HHHHcCccceEE
Confidence 999999998764
|
| >1z41_A YQJM, probable NADH-dependent flavin oxidoreductase YQJ; FMN, beta-alpha-barrel; HET: FMN; 1.30A {Bacillus subtilis} SCOP: c.1.4.1 PDB: 1z42_A* 1z44_A* 1z48_A* | Back alignment and structure |
|---|
Probab=89.73 E-value=5.3 Score=36.41 Aligned_cols=87 Identities=17% Similarity=0.231 Sum_probs=60.9
Q ss_pred HHHHHHHHHHhhcCCcEEEEeecCC------CC---HHHHHHHHhcCCcEEEEccCC--------Cc---HHHHHHHHh-
Q 020013 50 YLRDLIRKTRSLTERPFGVGVVLAF------PH---NENIKAILSEKVAVLQVSWGE--------YS---EELVLEAHS- 108 (332)
Q Consensus 50 ~~~~~i~~~r~~~~~p~gvnl~~~~------~~---~~~~~~~~~~~~~~I~~~~g~--------~~---~~~i~~~~~- 108 (332)
.+.+.++.+|+..+.|++|-+-... .. .+.++.+.+.|+|+|+++.+. .+ .++++.+++
T Consensus 196 ~~~eiv~avr~~v~~pv~vris~~~~~~~g~~~~~~~~~a~~l~~~Gvd~i~v~~~~~~~~~~~~~~~~~~~~~~~ir~~ 275 (338)
T 1z41_A 196 FLREIIDEVKQVWDGPLFVRVSASDYTDKGLDIADHIGFAKWMKEQGVDLIDCSSGALVHADINVFPGYQVSFAEKIREQ 275 (338)
T ss_dssp HHHHHHHHHHHHCCSCEEEEEECCCCSTTSCCHHHHHHHHHHHHHTTCCEEEEECCCSSCCCCCCCTTTTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCcEEEEecCcccCCCCCCHHHHHHHHHHHHHcCCCEEEEecCccccCCCCCCccchHHHHHHHHHH
Confidence 3567788888777889988875532 11 234556677899999986431 11 245666665
Q ss_pred CCCEEEE--ecCCHHHHHHHHHcC-CCEEEE
Q 020013 109 AGVKVVP--QVGSFDEARKAVNAG-VDAIIV 136 (332)
Q Consensus 109 ~g~~v~~--~v~s~~~a~~a~~~g-~D~ivv 136 (332)
.+++|+. .+.+.+++.++++.| +|.|.+
T Consensus 276 ~~iPVi~~Ggi~s~~~a~~~l~~G~aD~V~i 306 (338)
T 1z41_A 276 ADMATGAVGMITDGSMAEEILQNGRADLIFI 306 (338)
T ss_dssp HCCEEEECSSCCSHHHHHHHHHTTSCSEEEE
T ss_pred CCCCEEEECCCCCHHHHHHHHHcCCceEEee
Confidence 3778775 466899999999998 999987
|
| >1s2w_A Phosphoenolpyruvate phosphomutase; phosphonopyruvate, phosphonate biosynthesis pathway, isomera; 1.69A {Mytilus edulis} SCOP: c.1.12.7 PDB: 1m1b_A 1s2t_A 1s2v_A 1pym_A 1s2u_A | Back alignment and structure |
|---|
Probab=89.56 E-value=2.2 Score=38.42 Aligned_cols=91 Identities=19% Similarity=0.226 Sum_probs=57.6
Q ss_pred HHHHHHhC-CCEEEEecCCHHHHHHHHHcCCCEEEEecCCC---CcccCCC-Cc---hhhhHHHHHHHhCCCCCcEEeec
Q 020013 102 LVLEAHSA-GVKVVPQVGSFDEARKAVNAGVDAIIVQGREA---GGHVIGQ-DG---LISLLPMVVDLIGDRDIPIIAAG 173 (332)
Q Consensus 102 ~i~~~~~~-g~~v~~~v~s~~~a~~a~~~g~D~ivv~G~ea---GGh~~~~-~~---~~~ll~~i~~~~~~~~iPviaaG 173 (332)
.++.+++. ...+++.+.+.-.|+.+.++|.|+|.+.|... -|+.+.. .+ ....+..|.+.. ++||++..
T Consensus 10 ~lr~l~~~~~~i~~~~a~D~~sA~~~~~aG~~ai~vsg~~~a~~lG~pD~~~vt~~em~~~~~~I~~~~---~~PviaD~ 86 (295)
T 1s2w_A 10 QLKQMLNSKDLEFIMEAHNGLSARIVQEAGFKGIWGSGLSVSAQLGVRDSNEASWTQVVEVLEFMSDAS---DVPILLDA 86 (295)
T ss_dssp HHHHHHHSSSCEEEEEECSHHHHHHHHHHTCSCEEECCHHHHHTC---------CHHHHHHHHHHHHTC---SSCEEEEC
T ss_pred HHHHHHhCCCcEEEecCCCHHHHHHHHHcCCCEEEeChHHHHHhCCCCCCCCCCHHHHHHHHHHHHhcC---CCCEEecC
Confidence 34555554 46778899999999999999999999975421 2333211 11 133344455544 79999874
Q ss_pred --CcCCHH----HHHHHHHcCcceeeec
Q 020013 174 --GIVDAR----GYVAALSLGAQGICLG 195 (332)
Q Consensus 174 --GI~~~~----~v~~al~~GA~gV~~G 195 (332)
|-+++. ++..++..||+||.+=
T Consensus 87 d~Gyg~~~~v~~~v~~l~~aGaagv~iE 114 (295)
T 1s2w_A 87 DTGYGNFNNARRLVRKLEDRGVAGACLE 114 (295)
T ss_dssp CSSCSSHHHHHHHHHHHHHTTCCEEEEE
T ss_pred CCCCCCHHHHHHHHHHHHHcCCcEEEEC
Confidence 344544 4556778999999883
|
| >3kto_A Response regulator receiver protein; PSI-II,structural genomics, protein structure initiative; 1.98A {Pseudoalteromonas atlantica T6C} SCOP: c.23.1.0 | Back alignment and structure |
|---|
Probab=89.54 E-value=0.89 Score=34.79 Aligned_cols=84 Identities=17% Similarity=0.095 Sum_probs=58.1
Q ss_pred HHHHhCCCEEEEecCCHHHHHHHHH-cCCCEEEEecCCCCcccCCCCchhhhHHHHHHHhCCCCCcEEeecCcCCHHHHH
Q 020013 104 LEAHSAGVKVVPQVGSFDEARKAVN-AGVDAIIVQGREAGGHVIGQDGLISLLPMVVDLIGDRDIPIIAAGGIVDARGYV 182 (332)
Q Consensus 104 ~~~~~~g~~v~~~v~s~~~a~~a~~-~g~D~ivv~G~eaGGh~~~~~~~~~ll~~i~~~~~~~~iPviaaGGI~~~~~v~ 182 (332)
+.+++.|..+. .+.+.+++....+ ..+|.|++.-.-.++ ....+.++..+++... ++|||.-.+-.+.+.+.
T Consensus 24 ~~L~~~g~~v~-~~~~~~~a~~~l~~~~~dlvi~D~~l~~~----~~~g~~~~~~l~~~~~--~~~ii~~s~~~~~~~~~ 96 (136)
T 3kto_A 24 KLLSPLDVTIQ-CFASAESFMRQQISDDAIGMIIEAHLEDK----KDSGIELLETLVKRGF--HLPTIVMASSSDIPTAV 96 (136)
T ss_dssp HHHTTSSSEEE-EESSHHHHTTSCCCTTEEEEEEETTGGGB----TTHHHHHHHHHHHTTC--CCCEEEEESSCCHHHHH
T ss_pred HHHHHCCcEEE-EeCCHHHHHHHHhccCCCEEEEeCcCCCC----CccHHHHHHHHHhCCC--CCCEEEEEcCCCHHHHH
Confidence 34455677766 6778887765543 458988885321110 0234677888877542 68999988888999999
Q ss_pred HHHHcCcceeee
Q 020013 183 AALSLGAQGICL 194 (332)
Q Consensus 183 ~al~~GA~gV~~ 194 (332)
+++.+||+++..
T Consensus 97 ~~~~~ga~~~l~ 108 (136)
T 3kto_A 97 RAMRASAADFIE 108 (136)
T ss_dssp HHHHTTCSEEEE
T ss_pred HHHHcChHHhee
Confidence 999999998764
|
| >1m3u_A 3-methyl-2-oxobutanoate hydroxymethyltransferase; beta-alpha-barrel, TIM-barrel, ketopantoate, selenomethionin decamer; HET: KPL; 1.80A {Escherichia coli} SCOP: c.1.12.8 | Back alignment and structure |
|---|
Probab=89.47 E-value=3.7 Score=36.25 Aligned_cols=89 Identities=12% Similarity=0.108 Sum_probs=57.7
Q ss_pred HHHHHhC-CCEEEEecCCHHHHHHHHHcCCCEEEEecCCCC----cccCC-CCch---hhhHHHHHHHhCCCCCcEEeec
Q 020013 103 VLEAHSA-GVKVVPQVGSFDEARKAVNAGVDAIIVQGREAG----GHVIG-QDGL---ISLLPMVVDLIGDRDIPIIAAG 173 (332)
Q Consensus 103 i~~~~~~-g~~v~~~v~s~~~a~~a~~~g~D~ivv~G~eaG----Gh~~~-~~~~---~~ll~~i~~~~~~~~iPviaaG 173 (332)
++.+++. ...+++.+.+.-.|+.+.++|+|+|.+ |...| ||.+. ..+. +...+.+++..+ ..||++.=
T Consensus 9 lr~~k~~g~~i~~~tayD~~sA~l~e~aG~d~ilv-Gdsl~~~~lG~~dt~~vtldemi~h~~aV~r~~~--~~~vvaD~ 85 (264)
T 1m3u_A 9 LQKYKQEKKRFATITAYDYSFAKLFADEGLNVMLV-GDSLGMTVQGHDSTLPVTVADIAYHTAAVRRGAP--NCLLLADL 85 (264)
T ss_dssp HHHHHHHTCCEEEEECCSHHHHHHHHHHTCCEEEE-CTTHHHHTTCCSSSTTCCHHHHHHHHHHHHHHCT--TSEEEEEC
T ss_pred HHHHHHCCCcEEEEeCcCHHHHHHHHHcCCCEEEE-CHHHHHHHcCCCCCCCcCHHHHHHHHHHHHhhCC--CCcEEEEC
Confidence 4445544 466778899999999999999999998 54322 44322 1222 223445555442 35678776
Q ss_pred CcC---CHHHH----HHHHHcCcceeee
Q 020013 174 GIV---DARGY----VAALSLGAQGICL 194 (332)
Q Consensus 174 GI~---~~~~v----~~al~~GA~gV~~ 194 (332)
+.+ +++++ .++++.||++|-+
T Consensus 86 pfgsy~~~~~a~~~a~rl~kaGa~aVkl 113 (264)
T 1m3u_A 86 PFMAYATPEQAFENAATVMRAGANMVKI 113 (264)
T ss_dssp CTTSSSSHHHHHHHHHHHHHTTCSEEEC
T ss_pred CCCCcCCHHHHHHHHHHHHHcCCCEEEE
Confidence 665 55444 4678899999987
|
| >2ovl_A Putative racemase; structural genomics, PSI-2, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.13A {Streptomyces coelicolor A3} PDB: 3ck5_A | Back alignment and structure |
|---|
Probab=89.47 E-value=3.4 Score=38.14 Aligned_cols=108 Identities=9% Similarity=0.020 Sum_probs=73.8
Q ss_pred HHHHHhcCCcEEEEccCC-CcH---HHHHHHHh---CCCEEEEecC---CHHHHHH----HHHcCCCEEEEecCCCCccc
Q 020013 80 IKAILSEKVAVLQVSWGE-YSE---ELVLEAHS---AGVKVVPQVG---SFDEARK----AVNAGVDAIIVQGREAGGHV 145 (332)
Q Consensus 80 ~~~~~~~~~~~I~~~~g~-~~~---~~i~~~~~---~g~~v~~~v~---s~~~a~~----a~~~g~D~ivv~G~eaGGh~ 145 (332)
+..+.+.|.+.|-++.|. .+. +.++.+++ .++++...++ +.+++.. ..+.|+++| +-+
T Consensus 154 a~~~~~~Gf~~iKik~g~~~~~~~~e~v~avr~a~G~d~~l~vDan~~~~~~~a~~~~~~l~~~~i~~i--EqP------ 225 (371)
T 2ovl_A 154 ADRFLAGGFRAIKMKVGRPDLKEDVDRVSALREHLGDSFPLMVDANMKWTVDGAIRAARALAPFDLHWI--EEP------ 225 (371)
T ss_dssp HHHHHHTTCSCEEEECCCSSHHHHHHHHHHHHHHHCTTSCEEEECTTCSCHHHHHHHHHHHGGGCCSEE--ECC------
T ss_pred HHHHHHcCCCEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEECCCCCCHHHHHHHHHHHHhcCCCEE--ECC------
Confidence 344557789999988775 233 44555555 3577877765 6666643 345688865 322
Q ss_pred CCCCchhhhHHHHHHHhCCCCCcEEeecCcCCHHHHHHHHHcC-cceeeeccccc
Q 020013 146 IGQDGLISLLPMVVDLIGDRDIPIIAAGGIVDARGYVAALSLG-AQGICLGTRFV 199 (332)
Q Consensus 146 ~~~~~~~~ll~~i~~~~~~~~iPviaaGGI~~~~~v~~al~~G-A~gV~~GT~fl 199 (332)
-+...+..+.++++.+ ++||++.+.+.+.+++.+++..| +|.|++....+
T Consensus 226 -~~~~d~~~~~~l~~~~---~iPI~~dE~~~~~~~~~~~i~~~~~d~v~ik~~~~ 276 (371)
T 2ovl_A 226 -TIPDDLVGNARIVRES---GHTIAGGENLHTLYDFHNAVRAGSLTLPEPDVSNI 276 (371)
T ss_dssp -SCTTCHHHHHHHHHHH---CSCEEECTTCCSHHHHHHHHHHTCCSEECCCTTTT
T ss_pred -CCcccHHHHHHHHhhC---CCCEEeCCCCCCHHHHHHHHHcCCCCEEeeCcccc
Confidence 1113466777888777 79999999999999999999876 68888765433
|
| >1dz3_A Stage 0 sporulation protein A; response regulator, domain swapping; 1.65A {Bacillus stearothermophilus} SCOP: c.23.1.1 PDB: 1qmp_A* | Back alignment and structure |
|---|
Probab=89.38 E-value=4.9 Score=29.97 Aligned_cols=82 Identities=12% Similarity=0.051 Sum_probs=56.5
Q ss_pred HHhC-CCEEEEecCCHHHHHHHH-HcCCCEEEEecCCCCcccCCCCchhhhHHHHHHHhCCCCCcEEeecCcCCHHHHHH
Q 020013 106 AHSA-GVKVVPQVGSFDEARKAV-NAGVDAIIVQGREAGGHVIGQDGLISLLPMVVDLIGDRDIPIIAAGGIVDARGYVA 183 (332)
Q Consensus 106 ~~~~-g~~v~~~v~s~~~a~~a~-~~g~D~ivv~G~eaGGh~~~~~~~~~ll~~i~~~~~~~~iPviaaGGI~~~~~v~~ 183 (332)
+... |..++..+.+.+++.... ...+|.|++.-.-.+ ...+.++..+++... ..+|||.-.+-.+.+.+.+
T Consensus 22 l~~~~~~~~~~~~~~~~~a~~~~~~~~~dlvllD~~l~~------~~g~~~~~~l~~~~~-~~~~ii~ls~~~~~~~~~~ 94 (130)
T 1dz3_A 22 ISSQPDMEVIGTAYNGQDCLQMLEEKRPDILLLDIIMPH------LDGLAVLERIRAGFE-HQPNVIMLTAFGQEDVTKK 94 (130)
T ss_dssp HHTSTTEEEEEEESSHHHHHHHHHHHCCSEEEEESCCSS------SCHHHHHHHHHHHCS-SCCEEEEEEETTCHHHHHH
T ss_pred HHhCCCceEEEEeCCHHHHHHHHhcCCCCEEEEecCCCC------CCHHHHHHHHHhcCC-CCCcEEEEecCCCHHHHHH
Confidence 4444 667766788888877654 457899998532111 133677777776421 2578888888778888999
Q ss_pred HHHcCcceeee
Q 020013 184 ALSLGAQGICL 194 (332)
Q Consensus 184 al~~GA~gV~~ 194 (332)
++..||+++..
T Consensus 95 ~~~~ga~~~l~ 105 (130)
T 1dz3_A 95 AVELGASYFIL 105 (130)
T ss_dssp HHHTTCEEEEE
T ss_pred HHHcCCCEEEe
Confidence 99999988753
|
| >3oa3_A Aldolase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, pathogenic fungus; 1.60A {Coccidioides immitis} | Back alignment and structure |
|---|
Probab=89.23 E-value=3.7 Score=36.69 Aligned_cols=118 Identities=18% Similarity=0.097 Sum_probs=73.7
Q ss_pred HHHHHHhcCCcEEEEccCCCcHHHHHHHHhCCCEEEEecC------C----HHHHHHHHHcCCCEEEEe-cCCCCcccCC
Q 020013 79 NIKAILSEKVAVLQVSWGEYSEELVLEAHSAGVKVVPQVG------S----FDEARKAVNAGVDAIIVQ-GREAGGHVIG 147 (332)
Q Consensus 79 ~~~~~~~~~~~~I~~~~g~~~~~~i~~~~~~g~~v~~~v~------s----~~~a~~a~~~g~D~ivv~-G~eaGGh~~~ 147 (332)
.++.+.+.++..|.++-. ..+...+.++..+++|...++ + ..|++.+.+.|+|-|-+. +. |-...+
T Consensus 79 lc~eA~~~g~aaVCV~P~-~V~~a~~~L~~s~V~V~tVigFP~G~~~~~~Kv~Ea~~Ai~~GAdEIDmVINi--g~lk~g 155 (288)
T 3oa3_A 79 LCAEAKEYGFATVCVRPD-YVSRAVQYLQGTQVGVTCVIGFHEGTYSTDQKVSEAKRAMQNGASELDMVMNY--PWLSEK 155 (288)
T ss_dssp HHHHHHHHTCSEEEECGG-GHHHHHHHTTTSSCEEEEEESTTTSCSCHHHHHHHHHHHHHTTCSEEEEECCH--HHHHTT
T ss_pred HHHHHHhcCCcEEEECHH-HHHHHHHHcCCCCCeEEEEeCCCCCCCcHHHHHHHHHHHHHcCCCEEEEEeeh--hhhcCC
Confidence 345666788999988722 223333445556788765553 1 347888999999988642 22 100001
Q ss_pred C-CchhhhHHHHHHHhCCCCCcEEeecCcCCHHHHHH----HHHcCcceeeeccccc
Q 020013 148 Q-DGLISLLPMVVDLIGDRDIPIIAAGGIVDARGYVA----ALSLGAQGICLGTRFV 199 (332)
Q Consensus 148 ~-~~~~~ll~~i~~~~~~~~iPviaaGGI~~~~~v~~----al~~GA~gV~~GT~fl 199 (332)
. ......+.++++.....-+.||..-|.-+.+++.. +..+|||.|-..|.|-
T Consensus 156 ~~~~v~~eI~~V~~a~~~~~lKVIlEt~~Lt~eei~~A~~ia~eaGADfVKTSTGf~ 212 (288)
T 3oa3_A 156 RYTDVFQDIRAVRLAAKDAILKVILETSQLTADEIIAGCVLSSLAGADYVKTSTGFN 212 (288)
T ss_dssp CHHHHHHHHHHHHHHTTTSEEEEECCGGGCCHHHHHHHHHHHHHTTCSEEECCCSSS
T ss_pred cHHHHHHHHHHHHHHhcCCCceEEEECCCCCHHHHHHHHHHHHHcCCCEEEcCCCCC
Confidence 1 23355667777765321267888877778888544 3458999999999985
|
| >1dos_A Aldolase class II; lyase, classii fructose 1,6-bisphosphate aldolase, glycolysis; 1.67A {Escherichia coli} SCOP: c.1.10.2 PDB: 1b57_A* 1gyn_A 1zen_A | Back alignment and structure |
|---|
Probab=89.22 E-value=13 Score=34.15 Aligned_cols=147 Identities=12% Similarity=0.054 Sum_probs=84.9
Q ss_pred HHHHHHhhcCCcEEEEeecCCC-CHHHHHHHHhc-----------CCcEEEEccCCCc--------HHHHHHHHhCCCEE
Q 020013 54 LIRKTRSLTERPFGVGVVLAFP-HNENIKAILSE-----------KVAVLQVSWGEYS--------EELVLEAHSAGVKV 113 (332)
Q Consensus 54 ~i~~~r~~~~~p~gvnl~~~~~-~~~~~~~~~~~-----------~~~~I~~~~g~~~--------~~~i~~~~~~g~~v 113 (332)
.+..+.+..+.|+.+++=--.. ..+.++.++++ +...|-+.....| .++++.++..|+.|
T Consensus 92 ~v~~~A~~~~VPVaLHlDHg~~~~~~~i~~~i~a~~~~~~~~~~~gFtSVMiDgS~~p~eENI~~Tkevv~~ah~~gvsV 171 (358)
T 1dos_A 92 HVHQMAEHYGVPVILHTDHCAKKLLPWIDGLLDAGEKHFAATGKPLFSSHMIDLSEESLQENIEICSKYLERMSKIGMTL 171 (358)
T ss_dssp HHHHHHHHHTCEEEEEECCCCGGGHHHHHHHHHHHHHHHHHHSSCSCSEEEECCTTSCHHHHHHHHHHHHHHHHHTTCEE
T ss_pred HHHHHHHHCCCCEEEECCCCCCccHHHHHHHHHHHHHHHHhcccCCCceEeecCCCCCHHHHHHHHHHHHHHHHHcCCEE
Confidence 3344434456787776522111 01345544443 3666666533333 24556667666554
Q ss_pred EE---------------------ecCCHHHHHHHHHc--CCC---EEEE-ecCCCCccc-CCCCchhhhHHHHHHHhC--
Q 020013 114 VP---------------------QVGSFDEARKAVNA--GVD---AIIV-QGREAGGHV-IGQDGLISLLPMVVDLIG-- 163 (332)
Q Consensus 114 ~~---------------------~v~s~~~a~~a~~~--g~D---~ivv-~G~eaGGh~-~~~~~~~~ll~~i~~~~~-- 163 (332)
=. ..++++++....+. |+| .+-+ .|.-=|-.. +.+.-.+.+|.++.+.+.
T Consensus 172 EaELG~vGG~EDgv~~~~~~~~~~yT~Peea~~fv~~ttgvd~~d~LAvaiGt~HG~Yk~g~p~L~~~~L~~i~~~i~~~ 251 (358)
T 1dos_A 172 EIELGCTGGEEDGVDNSHMDASALYTQPEDVDYAYTELSKISPRFTIAASFGNVHGVYKAGNVVLTPTILRDSQEYVSKK 251 (358)
T ss_dssp EEECCCCCCCCCCCSCCCCCCCCCSCCHHHHHHHHHHHHTTCSCEEEECCSSCCCSSCCCSCCCCCTHHHHHHHHHHHHH
T ss_pred EEEeccccCcCCCccccccccccccCCHHHHHHHHHHhcCCChhceEEEecccccCccCCCCCCcCHHHHHHHHHHHHHH
Confidence 11 12679999988765 898 6654 232111111 112234677777766421
Q ss_pred ----CCCCcEEeec--CcCCHHHHHHHHHcCcceeeeccccccC
Q 020013 164 ----DRDIPIIAAG--GIVDARGYVAALSLGAQGICLGTRFVAS 201 (332)
Q Consensus 164 ----~~~iPviaaG--GI~~~~~v~~al~~GA~gV~~GT~fl~t 201 (332)
..++|++.-| |+ ..+++.+++.+|..-|=++|-+-.+
T Consensus 252 ~g~~~~~vpLVlHGgSG~-~~e~i~~ai~~GV~KiNi~Tdl~~A 294 (358)
T 1dos_A 252 HNLPHNSLNFVFHGGSGS-TAQEIKDSVSYGVVKMNIDTDTQWA 294 (358)
T ss_dssp HTCCTTCSCEEECSCTTC-CHHHHHHHHHTTEEEEEECHHHHHH
T ss_pred hCCCCCCCcEEEeCCCCC-CHHHHHHHHHCCCeEEEEcHHHHHH
Confidence 1269999888 66 5678999999999999999876433
|
| >3m5v_A DHDPS, dihydrodipicolinate synthase; TIM barrel, csgid, amino-acid biosynthesis, diaminopimelate biosynthesis, lyase, lysine biosynthesis; HET: MSE; 1.80A {Campylobacter jejuni} SCOP: c.1.10.0 PDB: 3ler_A* | Back alignment and structure |
|---|
Probab=89.10 E-value=2.1 Score=38.47 Aligned_cols=127 Identities=19% Similarity=0.200 Sum_probs=72.6
Q ss_pred HHHHHHHhcCCcEEEEc--cCCC----cH---HHHHHHHh---C-CCEEEEecC--C----HHHHHHHHHcCCCEEEEec
Q 020013 78 ENIKAILSEKVAVLQVS--WGEY----SE---ELVLEAHS---A-GVKVVPQVG--S----FDEARKAVNAGVDAIIVQG 138 (332)
Q Consensus 78 ~~~~~~~~~~~~~I~~~--~g~~----~~---~~i~~~~~---~-g~~v~~~v~--s----~~~a~~a~~~g~D~ivv~G 138 (332)
..++.+++.|++.+.+. .|.. .+ ++++...+ . .++|+..++ + ++.++.+.+.|+|++.+..
T Consensus 32 ~lv~~li~~Gv~gl~v~GttGE~~~Ls~~Er~~v~~~~~~~~~g~rvpviaGvg~~~t~~ai~la~~a~~~Gadavlv~~ 111 (301)
T 3m5v_A 32 RLIKRQIENGIDAVVPVGTTGESATLTHEEHRTCIEIAVETCKGTKVKVLAGAGSNATHEAVGLAKFAKEHGADGILSVA 111 (301)
T ss_dssp HHHHHHHHTTCCEEECSSTTTTGGGSCHHHHHHHHHHHHHHHTTSSCEEEEECCCSSHHHHHHHHHHHHHTTCSEEEEEC
T ss_pred HHHHHHHHcCCCEEEECccccChhhCCHHHHHHHHHHHHHHhCCCCCeEEEeCCCCCHHHHHHHHHHHHHcCCCEEEEcC
Confidence 45666777889888764 1221 12 23333332 2 488888776 3 3456678899999999976
Q ss_pred CCCCcccCCCCchhhhHHHHHHHhCCCCCcEEee------cCcCCHHHHHHHHHcCcceeeeccccccCccCCCCHHHHH
Q 020013 139 REAGGHVIGQDGLISLLPMVVDLIGDRDIPIIAA------GGIVDARGYVAALSLGAQGICLGTRFVASEESYAHPEYKR 212 (332)
Q Consensus 139 ~eaGGh~~~~~~~~~ll~~i~~~~~~~~iPviaa------GGI~~~~~v~~al~~GA~gV~~GT~fl~t~Es~~~~~~k~ 212 (332)
+..-. ..+........++.++. ++||+.= |---+++.+.+..+.- -.+..-+|+..+-..-.
T Consensus 112 P~y~~--~s~~~l~~~f~~va~a~---~lPiilYn~P~~tg~~l~~~~~~~La~~~-------pnivgiKdssgd~~~~~ 179 (301)
T 3m5v_A 112 PYYNK--PTQQGLYEHYKAIAQSV---DIPVLLYNVPGRTGCEISTDTIIKLFRDC-------ENIYGVKEASGNIDKCV 179 (301)
T ss_dssp CCSSC--CCHHHHHHHHHHHHHHC---SSCEEEEECHHHHSCCCCHHHHHHHHHHC-------TTEEEEEECSSCHHHHH
T ss_pred CCCCC--CCHHHHHHHHHHHHHhC---CCCEEEEeCchhhCcCCCHHHHHHHHhcC-------CCEEEEEeCCCCHHHHH
Confidence 53221 12234566777888876 7898742 3223667776654430 12344566655544433
Q ss_pred HHhc
Q 020013 213 KLVE 216 (332)
Q Consensus 213 ~~~~ 216 (332)
.+.+
T Consensus 180 ~~~~ 183 (301)
T 3m5v_A 180 DLLA 183 (301)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 3443
|
| >1zgz_A Torcad operon transcriptional regulatory protein; two-component system, gene regulation, transcription factor, respiratory system; 1.80A {Escherichia coli} SCOP: c.23.1.1 | Back alignment and structure |
|---|
Probab=89.09 E-value=5.3 Score=29.30 Aligned_cols=81 Identities=20% Similarity=0.188 Sum_probs=55.4
Q ss_pred HHHHhCCCEEEEecCCHHHHHHHH-HcCCCEEEEecCCCCcccCCCCchhhhHHHHHHHhCCCCCcEEeecCcCCHHHHH
Q 020013 104 LEAHSAGVKVVPQVGSFDEARKAV-NAGVDAIIVQGREAGGHVIGQDGLISLLPMVVDLIGDRDIPIIAAGGIVDARGYV 182 (332)
Q Consensus 104 ~~~~~~g~~v~~~v~s~~~a~~a~-~~g~D~ivv~G~eaGGh~~~~~~~~~ll~~i~~~~~~~~iPviaaGGI~~~~~v~ 182 (332)
+.+...|..+. .+.+.+++.... ...+|.+++.-.-.+ ...+.++..+++ . .++|+|.-.+-.+.+...
T Consensus 20 ~~L~~~~~~v~-~~~~~~~~~~~~~~~~~dlvi~d~~l~~------~~g~~~~~~l~~-~--~~~~ii~~s~~~~~~~~~ 89 (122)
T 1zgz_A 20 SYFTQEGYTVS-VTASGAGLREIMQNQSVDLILLDINLPD------ENGLMLTRALRE-R--STVGIILVTGRSDRIDRI 89 (122)
T ss_dssp HHHHHTTCEEE-EESSHHHHHHHHHHSCCSEEEEESCCSS------SCHHHHHHHHHT-T--CCCEEEEEESSCCHHHHH
T ss_pred HHHHHCCCeEE-EecCHHHHHHHHhcCCCCEEEEeCCCCC------CChHHHHHHHHh-c--CCCCEEEEECCCChhhHH
Confidence 34555677664 566777776554 456899988532111 123567777776 2 268999888887888889
Q ss_pred HHHHcCcceeee
Q 020013 183 AALSLGAQGICL 194 (332)
Q Consensus 183 ~al~~GA~gV~~ 194 (332)
.++.+||+++..
T Consensus 90 ~~~~~ga~~~l~ 101 (122)
T 1zgz_A 90 VGLEMGADDYVT 101 (122)
T ss_dssp HHHHHTCSEEEE
T ss_pred HHHHhCHHHHcc
Confidence 999999998764
|
| >3vkj_A Isopentenyl-diphosphate delta-isomerase; type 2 isopentenyl diphosphate isomerase; HET: FNR; 1.70A {Sulfolobus shibatae} PDB: 2zrv_A* 2zrw_A* 2zrx_A* 2zry_A* 2zrz_A* 3b03_A* 3b04_A* 3b05_A* 3b06_A* 2zru_A* | Back alignment and structure |
|---|
Probab=89.07 E-value=3.6 Score=38.22 Aligned_cols=86 Identities=19% Similarity=0.077 Sum_probs=58.3
Q ss_pred HHHHHHHHHhhcCCcEEEEeecCCCCHHHHHHHHhcCCcEEEEc--cCCC----------------------------c-
Q 020013 51 LRDLIRKTRSLTERPFGVGVVLAFPHNENIKAILSEKVAVLQVS--WGEY----------------------------S- 99 (332)
Q Consensus 51 ~~~~i~~~r~~~~~p~gvnl~~~~~~~~~~~~~~~~~~~~I~~~--~g~~----------------------------~- 99 (332)
..+.++.+++.++.|+.+..+.+....+..+.+.+.|+|+|.++ .|.. |
T Consensus 175 ~~~~i~~i~~~~~vPVivK~vG~g~s~~~A~~l~~aGad~I~V~g~GGt~~~~iE~~R~~~~~~~~~~~~~~~~~~g~pt 254 (368)
T 3vkj_A 175 ALEKLRDISKELSVPIIVKESGNGISMETAKLLYSYGIKNFDTSGQGGTNWIAIEMIRDIRRGNWKAESAKNFLDWGVPT 254 (368)
T ss_dssp HHHHHHHHHTTCSSCEEEECSSSCCCHHHHHHHHHTTCCEEECCCBTSBCHHHHHHHHHHHTTCTHHHHHHHTTTCSCBH
T ss_pred HHHHHHHHHHHcCCCEEEEeCCCCCCHHHHHHHHhCCCCEEEEeCCCCCcccchhhhhcccccccchhhccccccccccH
Confidence 56678888888889999875432223567888899999999883 3310 0
Q ss_pred HHHHHHHHh-C-CCEEEE--ecCCHHHHHHHHHcCCCEEEE
Q 020013 100 EELVLEAHS-A-GVKVVP--QVGSFDEARKAVNAGVDAIIV 136 (332)
Q Consensus 100 ~~~i~~~~~-~-g~~v~~--~v~s~~~a~~a~~~g~D~ivv 136 (332)
...+..+++ . .++|+. .+.+..++.+++..|+|+|.+
T Consensus 255 ~~~l~~v~~~~~~ipvia~GGI~~~~d~~kal~lGA~~v~i 295 (368)
T 3vkj_A 255 AASIMEVRYSVPDSFLVGSGGIRSGLDAAKAIALGADIAGM 295 (368)
T ss_dssp HHHHHHHHHHSTTCEEEEESSCCSHHHHHHHHHHTCSEEEE
T ss_pred HHHHHHHHHHcCCCcEEEECCCCCHHHHHHHHHcCCCEEEE
Confidence 011122222 2 477775 467888999998899999877
|
| >2rdx_A Mandelate racemase/muconate lactonizing enzyme, P; enolase, structural genomics, PSI, protein structu initiative, nysgrc; 2.00A {Roseovarius nubinhibens} | Back alignment and structure |
|---|
Probab=88.93 E-value=6.4 Score=36.38 Aligned_cols=105 Identities=11% Similarity=0.063 Sum_probs=71.4
Q ss_pred HHHHHhcCCcEEEEccCCCcH---HHHHHHHhC---CCEEEEecC---CHHHHHHHH----HcCCCEEEEecCCCCcccC
Q 020013 80 IKAILSEKVAVLQVSWGEYSE---ELVLEAHSA---GVKVVPQVG---SFDEARKAV----NAGVDAIIVQGREAGGHVI 146 (332)
Q Consensus 80 ~~~~~~~~~~~I~~~~g~~~~---~~i~~~~~~---g~~v~~~v~---s~~~a~~a~----~~g~D~ivv~G~eaGGh~~ 146 (332)
.+.+.+.|.+.|.++.|..+. +.++.+++. ++++...++ +.+++.... +.|+ + ++-+
T Consensus 153 a~~~~~~Gf~~iKik~g~~~~~~~e~v~avr~a~g~d~~l~vDan~~~~~~~a~~~~~~l~~~~i-~--iE~P------- 222 (379)
T 2rdx_A 153 LARHRAAGYRQFQIKVGADWQSDIDRIRACLPLLEPGEKAMADANQGWRVDNAIRLARATRDLDY-I--LEQP------- 222 (379)
T ss_dssp HHHHHHTTCCEEEEECCSCHHHHHHHHHHHGGGSCTTCEEEEECTTCSCHHHHHHHHHHTTTSCC-E--EECC-------
T ss_pred HHHHHHcCCCEEEEeccCCHHHHHHHHHHHHHhcCCCCEEEEECCCCCCHHHHHHHHHHHHhCCe-E--EeCC-------
Confidence 344567899999998775333 345555542 577877765 677765443 3455 3 3321
Q ss_pred CCCchhhhHHHHHHHhCCCCCcEEeecCcCCHHHHHHHHHcC-cceeeeccccc
Q 020013 147 GQDGLISLLPMVVDLIGDRDIPIIAAGGIVDARGYVAALSLG-AQGICLGTRFV 199 (332)
Q Consensus 147 ~~~~~~~ll~~i~~~~~~~~iPviaaGGI~~~~~v~~al~~G-A~gV~~GT~fl 199 (332)
...+..+.++++.+ ++||++.+.+.+.+++.+++..| +|.|++.-..+
T Consensus 223 --~~~~~~~~~l~~~~---~iPI~~de~i~~~~~~~~~i~~~~~d~v~ik~~~~ 271 (379)
T 2rdx_A 223 --CRSYEECQQVRRVA---DQPMKLDECVTGLHMAQRIVADRGAEICCLKISNL 271 (379)
T ss_dssp --SSSHHHHHHHHTTC---CSCEEECTTCCSHHHHHHHHHHTCCSEEEEETTTT
T ss_pred --cCCHHHHHHHHhhC---CCCEEEeCCcCCHHHHHHHHHcCCCCEEEEecccc
Confidence 11466677777665 79999999999999999999876 78888855433
|
| >2nql_A AGR_PAT_674P, isomerase/lactonizing enzyme; enolase, structural genomics, protein structure initiative, nysgxrc; 1.80A {Agrobacterium tumefaciens str} PDB: 4dn1_A | Back alignment and structure |
|---|
Probab=88.92 E-value=2.9 Score=38.86 Aligned_cols=105 Identities=10% Similarity=-0.063 Sum_probs=72.0
Q ss_pred HHHHhcCCcEEEEccCC-Cc--HHHHHHHHh---CCCEEEEecC---CHHHHHH----HHHcCCCEEEEecCCCCcccCC
Q 020013 81 KAILSEKVAVLQVSWGE-YS--EELVLEAHS---AGVKVVPQVG---SFDEARK----AVNAGVDAIIVQGREAGGHVIG 147 (332)
Q Consensus 81 ~~~~~~~~~~I~~~~g~-~~--~~~i~~~~~---~g~~v~~~v~---s~~~a~~----a~~~g~D~ivv~G~eaGGh~~~ 147 (332)
+.+.+.|.+.|-++.|. .+ .+.++.+++ .++++...++ +.+++.. ..+.++++| +-+ -
T Consensus 173 ~~~~~~Gf~~vKik~g~~~~~~~e~v~avr~a~g~d~~l~vDan~~~~~~~a~~~~~~l~~~~i~~i--EqP-------~ 243 (388)
T 2nql_A 173 KYWQDRGFNAFKFATPVADDGPAAEIANLRQVLGPQAKIAADMHWNQTPERALELIAEMQPFDPWFA--EAP-------V 243 (388)
T ss_dssp HHHHHTTCCEEEEEGGGCTTCHHHHHHHHHHHHCTTSEEEEECCSCSCHHHHHHHHHHHGGGCCSCE--ECC-------S
T ss_pred HHHHHhCCCEEEEeCCCCChHHHHHHHHHHHHhCCCCEEEEECCCCCCHHHHHHHHHHHhhcCCCEE--ECC-------C
Confidence 44557799999998764 23 355566665 3678887765 6666543 345688876 221 0
Q ss_pred CCchhhhHHHHHHHhCCCCCcEEeecCcCCHHHHHHHHHcC-cceeeeccc
Q 020013 148 QDGLISLLPMVVDLIGDRDIPIIAAGGIVDARGYVAALSLG-AQGICLGTR 197 (332)
Q Consensus 148 ~~~~~~ll~~i~~~~~~~~iPviaaGGI~~~~~v~~al~~G-A~gV~~GT~ 197 (332)
....+..+.++++.+ ++||++.+.+.+.+++.+++..| +|.|++-..
T Consensus 244 ~~~d~~~~~~l~~~~---~iPI~~dE~~~~~~~~~~~i~~~~~d~v~ik~~ 291 (388)
T 2nql_A 244 WTEDIAGLEKVSKNT---DVPIAVGEEWRTHWDMRARIERCRIAIVQPEMG 291 (388)
T ss_dssp CTTCHHHHHHHHTSC---CSCEEECTTCCSHHHHHHHHTTSCCSEECCCHH
T ss_pred ChhhHHHHHHHHhhC---CCCEEEeCCcCCHHHHHHHHHcCCCCEEEecCC
Confidence 112466677777665 79999999999999999999876 788887433
|
| >2fli_A Ribulose-phosphate 3-epimerase; (beta/alpha)8-barrel, D- xylitol 5-phosphate, isomerase; HET: DX5; 1.80A {Streptococcus pyogenes} SCOP: c.1.2.2 | Back alignment and structure |
|---|
Probab=88.86 E-value=1.1 Score=37.87 Aligned_cols=72 Identities=11% Similarity=0.051 Sum_probs=48.8
Q ss_pred HHHHHHHHcCCCEEEEecCCCCcccCCC-CchhhhHHHHHHHhCCCCCcEEeecCcCCHH-HHHHHHHcCcceeeeccc
Q 020013 121 DEARKAVNAGVDAIIVQGREAGGHVIGQ-DGLISLLPMVVDLIGDRDIPIIAAGGIVDAR-GYVAALSLGAQGICLGTR 197 (332)
Q Consensus 121 ~~a~~a~~~g~D~ivv~G~eaGGh~~~~-~~~~~ll~~i~~~~~~~~iPviaaGGI~~~~-~v~~al~~GA~gV~~GT~ 197 (332)
+.++.+.+.|+|++-+.-.+ |+.... ...+..+.++++.. +.|+.+.+.|.++. .+..+..+|||+|++...
T Consensus 20 ~~~~~~~~~G~~~i~~~~~d--g~~~~~~~~g~~~i~~i~~~~---~~~~~v~l~v~d~~~~i~~~~~~gad~v~vh~~ 93 (220)
T 2fli_A 20 SELARIEETDAEYVHIDIMD--GQFVPNISFGADVVASMRKHS---KLVFDCHLMVVDPERYVEAFAQAGADIMTIHTE 93 (220)
T ss_dssp HHHHHHHHTTCCEEEEEEEB--SSSSSCBCBCHHHHHHHHTTC---CSEEEEEEESSSGGGGHHHHHHHTCSEEEEEGG
T ss_pred HHHHHHHHcCCCEEEEEeec--CCCCCccccCHHHHHHHHHhC---CCCEEEEEeecCHHHHHHHHHHcCCCEEEEccC
Confidence 45566778899986543222 331011 11256677777654 68999999998875 478888899999999754
|
| >1xhf_A DYE resistance, aerobic respiration control protein ARCA; two-component system, gene regulation, transcription factor, anoxic redox control; 2.15A {Escherichia coli} SCOP: c.23.1.1 PDB: 1xhe_A | Back alignment and structure |
|---|
Probab=88.84 E-value=5.5 Score=29.23 Aligned_cols=81 Identities=12% Similarity=0.161 Sum_probs=56.0
Q ss_pred HHHHhCCCEEEEecCCHHHHHHHH-HcCCCEEEEecCCCCcccCCCCchhhhHHHHHHHhCCCCCcEEeecCcCCHHHHH
Q 020013 104 LEAHSAGVKVVPQVGSFDEARKAV-NAGVDAIIVQGREAGGHVIGQDGLISLLPMVVDLIGDRDIPIIAAGGIVDARGYV 182 (332)
Q Consensus 104 ~~~~~~g~~v~~~v~s~~~a~~a~-~~g~D~ivv~G~eaGGh~~~~~~~~~ll~~i~~~~~~~~iPviaaGGI~~~~~v~ 182 (332)
..+...|..+. .+.+..++.... ...+|.|++.-.-.+ ...+.++..+++. . ++|++.-.+-.+.....
T Consensus 21 ~~l~~~~~~v~-~~~~~~~a~~~~~~~~~dlvi~D~~l~~------~~g~~~~~~l~~~-~--~~~ii~~s~~~~~~~~~ 90 (123)
T 1xhf_A 21 SIFEAEGYDVF-EATDGAEMHQILSEYDINLVIMDINLPG------KNGLLLARELREQ-A--NVALMFLTGRDNEVDKI 90 (123)
T ss_dssp HHHHTTTCEEE-EESSHHHHHHHHHHSCCSEEEECSSCSS------SCHHHHHHHHHHH-C--CCEEEEEESCCSHHHHH
T ss_pred HHHhhCCcEEE-EeCCHHHHHHHHhcCCCCEEEEcCCCCC------CCHHHHHHHHHhC-C--CCcEEEEECCCChHHHH
Confidence 34455677754 577777776554 457999988432111 1236677777765 2 68998888887888889
Q ss_pred HHHHcCcceeee
Q 020013 183 AALSLGAQGICL 194 (332)
Q Consensus 183 ~al~~GA~gV~~ 194 (332)
.++..||+++..
T Consensus 91 ~~~~~g~~~~l~ 102 (123)
T 1xhf_A 91 LGLEIGADDYIT 102 (123)
T ss_dssp HHHHHTCSEEEE
T ss_pred HHHhcCcceEEe
Confidence 999999998754
|
| >1p4c_A L(+)-mandelate dehydrogenase; TIM barrel, hydroxy acid oxidizing enzyme, oxidoreductase; HET: FMN MES; 1.35A {Pseudomonas putida} SCOP: c.1.4.1 PDB: 1huv_A* 1p5b_A* 3giy_A* 2a7p_A* 2a85_A* 2a7n_A* | Back alignment and structure |
|---|
Probab=88.83 E-value=1.4 Score=41.19 Aligned_cols=82 Identities=18% Similarity=0.210 Sum_probs=58.6
Q ss_pred HHHHHHHHhhcCCcEEEEeecCCCCHHHHHHHHhcCCcEEEE--ccCC------CcHHHHHHHHh-CCCEEEE--ecCCH
Q 020013 52 RDLIRKTRSLTERPFGVGVVLAFPHNENIKAILSEKVAVLQV--SWGE------YSEELVLEAHS-AGVKVVP--QVGSF 120 (332)
Q Consensus 52 ~~~i~~~r~~~~~p~gvnl~~~~~~~~~~~~~~~~~~~~I~~--~~g~------~~~~~i~~~~~-~g~~v~~--~v~s~ 120 (332)
.+.++++++.++.|+.+..+. ..+.++.+.+.|+|.|.+ +.|. +..+.+..+++ .+.+|+. .+.+.
T Consensus 214 ~~~i~~i~~~~~~Pv~vkgv~---t~e~a~~a~~aGad~I~vs~~gg~~~d~~~~~~~~l~~v~~~~~~pVia~GGI~~~ 290 (380)
T 1p4c_A 214 WEALRWLRDLWPHKLLVKGLL---SAEDADRCIAEGADGVILSNHGGRQLDCAISPMEVLAQSVAKTGKPVLIDSGFRRG 290 (380)
T ss_dssp HHHHHHHHHHCCSEEEEEEEC---CHHHHHHHHHTTCSEEEECCGGGTSCTTCCCGGGTHHHHHHHHCSCEEECSSCCSH
T ss_pred HHHHHHHHHhcCCCEEEEecC---cHHHHHHHHHcCCCEEEEcCCCCCcCCCCcCHHHHHHHHHHHcCCeEEEECCCCCH
Confidence 467788888888898876432 256788889999999988 3221 11233444443 3557775 47799
Q ss_pred HHHHHHHHcCCCEEEE
Q 020013 121 DEARKAVNAGVDAIIV 136 (332)
Q Consensus 121 ~~a~~a~~~g~D~ivv 136 (332)
+++.+++..|+|+|.+
T Consensus 291 ~dv~kal~~GAdaV~i 306 (380)
T 1p4c_A 291 SDIVKALALGAEAVLL 306 (380)
T ss_dssp HHHHHHHHTTCSCEEE
T ss_pred HHHHHHHHhCCcHhhe
Confidence 9999999999999988
|
| >3lte_A Response regulator; structural genomics, PSI, protein structure initiative, NYSG YORK structural genomix research consortium, nysgxrc; 2.00A {Bermanella marisrubri} | Back alignment and structure |
|---|
Probab=88.82 E-value=5.8 Score=29.54 Aligned_cols=84 Identities=8% Similarity=-0.075 Sum_probs=55.6
Q ss_pred HHHHHhCCCEEEEecCCHHHHHHHH-HcCCCEEEEecCCCCcccCCCCchhhhHHHHHHHhCCCCCcEEeecCcCCHHHH
Q 020013 103 VLEAHSAGVKVVPQVGSFDEARKAV-NAGVDAIIVQGREAGGHVIGQDGLISLLPMVVDLIGDRDIPIIAAGGIVDARGY 181 (332)
Q Consensus 103 i~~~~~~g~~v~~~v~s~~~a~~a~-~~g~D~ivv~G~eaGGh~~~~~~~~~ll~~i~~~~~~~~iPviaaGGI~~~~~v 181 (332)
.+.+++.|..+. .+.+.+++.... +..+|.|++.-.-.+ ...+.++.++++.......||+...+-. .+.+
T Consensus 23 ~~~L~~~g~~v~-~~~~~~~a~~~l~~~~~dlii~d~~l~~------~~g~~~~~~l~~~~~~~~~~ii~~~~~~-~~~~ 94 (132)
T 3lte_A 23 ERVLKRDHWQVE-IAHNGFDAGIKLSTFEPAIMTLDLSMPK------LDGLDVIRSLRQNKVANQPKILVVSGLD-KAKL 94 (132)
T ss_dssp HHHHHHTTCEEE-EESSHHHHHHHHHHTCCSEEEEESCBTT------BCHHHHHHHHHTTTCSSCCEEEEECCSC-SHHH
T ss_pred HHHHHHCCcEEE-EeCCHHHHHHHHHhcCCCEEEEecCCCC------CCHHHHHHHHHhcCccCCCeEEEEeCCC-hHHH
Confidence 344556777665 677777776544 567999998533111 2336777777764321257788888874 4588
Q ss_pred HHHHHcCcceeee
Q 020013 182 VAALSLGAQGICL 194 (332)
Q Consensus 182 ~~al~~GA~gV~~ 194 (332)
.+++.+||+++..
T Consensus 95 ~~~~~~g~~~~l~ 107 (132)
T 3lte_A 95 QQAVTEGADDYLE 107 (132)
T ss_dssp HHHHHHTCCEEEC
T ss_pred HHHHHhChHHHhh
Confidence 8999999998753
|
| >3ks6_A Glycerophosphoryl diester phosphodiesterase; structural genomics, joint center for structural genomics, JCSG; HET: MSE; 1.80A {Agrobacterium tumefaciens str} PDB: 3ks5_A* | Back alignment and structure |
|---|
Probab=88.74 E-value=1.5 Score=38.25 Aligned_cols=56 Identities=14% Similarity=0.221 Sum_probs=46.2
Q ss_pred HHHHhcCCcEEEEccCCCcHHHHHHHHhCCCEEEE-ecCCHHHHHHHHHcCCCEEEE
Q 020013 81 KAILSEKVAVLQVSWGEYSEELVLEAHSAGVKVVP-QVGSFDEARKAVNAGVDAIIV 136 (332)
Q Consensus 81 ~~~~~~~~~~I~~~~g~~~~~~i~~~~~~g~~v~~-~v~s~~~a~~a~~~g~D~ivv 136 (332)
+.+...+++++..+.....+++++.+++.|++|.+ ++.++++++.+.+.|+|+|+.
T Consensus 175 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~~G~~V~~WTvn~~~~~~~l~~~GVDgIiT 231 (250)
T 3ks6_A 175 ETAIAHSIHEIGVHIDTADAGLMAQVQAAGLDFGCWAAHTPSQITKALDLGVKVFTT 231 (250)
T ss_dssp HHHHHTTCCEEEEEGGGCCHHHHHHHHHTTCEEEEECCCSHHHHHHHHHHTCSEEEE
T ss_pred HHHHhcCCCEEecchhhCCHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHcCCCEEEc
Confidence 34456788988887555567899999999999875 578899999999999999987
|
| >3s5o_A 4-hydroxy-2-oxoglutarate aldolase, mitochondrial; beta barrel, schiff base, hydroxyproline metabolis; HET: KPI; 1.97A {Homo sapiens} SCOP: c.1.10.0 PDB: 3s5n_A | Back alignment and structure |
|---|
Probab=88.72 E-value=2.1 Score=38.64 Aligned_cols=135 Identities=20% Similarity=0.224 Sum_probs=74.8
Q ss_pred HHHHHHHhcCCcEEEEc--cCCC----cH---HHHHHHHh---CCCEEEEecC--C----HHHHHHHHHcCCCEEEEecC
Q 020013 78 ENIKAILSEKVAVLQVS--WGEY----SE---ELVLEAHS---AGVKVVPQVG--S----FDEARKAVNAGVDAIIVQGR 139 (332)
Q Consensus 78 ~~~~~~~~~~~~~I~~~--~g~~----~~---~~i~~~~~---~g~~v~~~v~--s----~~~a~~a~~~g~D~ivv~G~ 139 (332)
..++.+++.|++.+.+. -|.. .+ ++++...+ ..++|+..++ + ++.++.+.+.|+|++.+..+
T Consensus 39 ~lv~~li~~Gv~Gl~v~GtTGE~~~Ls~~Er~~v~~~~~~~~~gr~pviaGvg~~~t~~ai~la~~A~~~Gadavlv~~P 118 (307)
T 3s5o_A 39 ENLHKLGTFPFRGFVVQGSNGEFPFLTSSERLEVVSRVRQAMPKNRLLLAGSGCESTQATVEMTVSMAQVGADAAMVVTP 118 (307)
T ss_dssp HHHHHHTTSCCSEEEESSGGGTGGGSCHHHHHHHHHHHHHTSCTTSEEEEECCCSSHHHHHHHHHHHHHTTCSEEEEECC
T ss_pred HHHHHHHHcCCCEEEECccccchhhCCHHHHHHHHHHHHHHcCCCCcEEEecCCCCHHHHHHHHHHHHHcCCCEEEEcCC
Confidence 34556667788887764 1221 12 34444444 2578887765 3 45567788999999998655
Q ss_pred CCCcccCCCCchhhhHHHHHHHhCCCCCcEEee-----cCc-CCHHHHHHHHHcCcceeeeccccccCccCCCCHHHHHH
Q 020013 140 EAGGHVIGQDGLISLLPMVVDLIGDRDIPIIAA-----GGI-VDARGYVAALSLGAQGICLGTRFVASEESYAHPEYKRK 213 (332)
Q Consensus 140 eaGGh~~~~~~~~~ll~~i~~~~~~~~iPviaa-----GGI-~~~~~v~~al~~GA~gV~~GT~fl~t~Es~~~~~~k~~ 213 (332)
..-.....+........++.++. ++||+.= -|+ -+++.+.+..+. -.+..-+|+..+-..-..
T Consensus 119 ~y~~~~~s~~~l~~~f~~ia~a~---~lPiilYn~P~~tg~~l~~~~~~~La~~--------pnIvgiKdssgd~~~~~~ 187 (307)
T 3s5o_A 119 CYYRGRMSSAALIHHYTKVADLS---PIPVVLYSVPANTGLDLPVDAVVTLSQH--------PNIVGMXDSGGDVTRIGL 187 (307)
T ss_dssp CTTGGGCCHHHHHHHHHHHHHHC---SSCEEEEECHHHHSCCCCHHHHHHHHTS--------TTEEEEEECSCCHHHHHH
T ss_pred CcCCCCCCHHHHHHHHHHHHhhc---CCCEEEEeCCcccCCCCCHHHHHHHhcC--------CCEEEEEcCCCCHHHHHH
Confidence 32110012234567777888776 6887742 232 256666665432 234455677655444334
Q ss_pred Hhc-CCCceEE
Q 020013 214 LVE-MDKTEYT 223 (332)
Q Consensus 214 ~~~-~~~t~~t 223 (332)
+.+ ....++.
T Consensus 188 ~~~~~~~~~f~ 198 (307)
T 3s5o_A 188 IVHKTRKQDFQ 198 (307)
T ss_dssp HHHHTTTSSCE
T ss_pred HHHhccCCCeE
Confidence 443 3334444
|
| >3l21_A DHDPS, dihydrodipicolinate synthase; DAPA, dimer, RV2753C, lysine biosynthesis, amino-acid biosynthesis, diaminopimelate biosynthesis; HET: KPI CME; 2.10A {Mycobacterium tuberculosis} SCOP: c.1.10.1 PDB: 1xxx_A | Back alignment and structure |
|---|
Probab=88.69 E-value=2 Score=38.80 Aligned_cols=125 Identities=18% Similarity=0.208 Sum_probs=70.0
Q ss_pred HHHHHHHhcCCcEEEEc--cCCC----cH---HHHHHHHh---CCCEEEEecC--C----HHHHHHHHHcCCCEEEEecC
Q 020013 78 ENIKAILSEKVAVLQVS--WGEY----SE---ELVLEAHS---AGVKVVPQVG--S----FDEARKAVNAGVDAIIVQGR 139 (332)
Q Consensus 78 ~~~~~~~~~~~~~I~~~--~g~~----~~---~~i~~~~~---~g~~v~~~v~--s----~~~a~~a~~~g~D~ivv~G~ 139 (332)
..++.+++.|++.+.+. .|.. .+ ++++...+ ..++|+..++ + ++.++.+.+.|+|++++..+
T Consensus 40 ~lv~~li~~Gv~gi~v~GttGE~~~Lt~~Er~~v~~~~~~~~~grvpviaGvg~~~t~~ai~la~~a~~~Gadavlv~~P 119 (304)
T 3l21_A 40 RLANHLVDQGCDGLVVSGTTGESPTTTDGEKIELLRAVLEAVGDRARVIAGAGTYDTAHSIRLAKACAAEGAHGLLVVTP 119 (304)
T ss_dssp HHHHHHHHTTCSEEEESSTTTTGGGSCHHHHHHHHHHHHHHHTTTSEEEEECCCSCHHHHHHHHHHHHHHTCSEEEEECC
T ss_pred HHHHHHHHcCCCEEEeCccccchhhCCHHHHHHHHHHHHHHhCCCCeEEEeCCCCCHHHHHHHHHHHHHcCCCEEEECCC
Confidence 44556667788877654 1221 12 23333332 3578887775 3 34566788999999999765
Q ss_pred CCCcccCCCCchhhhHHHHHHHhCCCCCcEEee------cCcCCHHHHHHHHHcCcceeeeccccccCccCCCCHHHHHH
Q 020013 140 EAGGHVIGQDGLISLLPMVVDLIGDRDIPIIAA------GGIVDARGYVAALSLGAQGICLGTRFVASEESYAHPEYKRK 213 (332)
Q Consensus 140 eaGGh~~~~~~~~~ll~~i~~~~~~~~iPviaa------GGI~~~~~v~~al~~GA~gV~~GT~fl~t~Es~~~~~~k~~ 213 (332)
..-. ..+........++.++. ++||+.= |---+++.+.+..+. -.+..-+|+..+-.+-..
T Consensus 120 ~y~~--~s~~~l~~~f~~va~a~---~lPiilYn~P~~tg~~l~~~~~~~La~~--------pnIvgiKdssgd~~~~~~ 186 (304)
T 3l21_A 120 YYSK--PPQRGLQAHFTAVADAT---ELPMLLYDIPGRSAVPIEPDTIRALASH--------PNIVGVXDAKADLHSGAQ 186 (304)
T ss_dssp CSSC--CCHHHHHHHHHHHHTSC---SSCEEEEECHHHHSSCCCHHHHHHHHTS--------TTEEEEEECSCCHHHHHH
T ss_pred CCCC--CCHHHHHHHHHHHHHhc---CCCEEEEeCccccCCCCCHHHHHHHhcC--------CCEEEEECCCCCHHHHHH
Confidence 3211 12234456666777765 7898753 322366666655432 234455666555443333
Q ss_pred Hh
Q 020013 214 LV 215 (332)
Q Consensus 214 ~~ 215 (332)
++
T Consensus 187 ~~ 188 (304)
T 3l21_A 187 IM 188 (304)
T ss_dssp HH
T ss_pred Hh
Confidence 33
|
| >3b2n_A Uncharacterized protein Q99UF4; structural genomics, PSI-2, protein structure initiative, NE SGX research center for structural genomics; 2.04A {Staphylococcus aureus} | Back alignment and structure |
|---|
Probab=88.69 E-value=3.5 Score=31.09 Aligned_cols=76 Identities=11% Similarity=0.063 Sum_probs=54.3
Q ss_pred CEEEEecCCHHHHHHHH-HcCCCEEEEecCCCCcccCCCCchhhhHHHHHHHhCCCCCcEEeecCcCCHHHHHHHHHcCc
Q 020013 111 VKVVPQVGSFDEARKAV-NAGVDAIIVQGREAGGHVIGQDGLISLLPMVVDLIGDRDIPIIAAGGIVDARGYVAALSLGA 189 (332)
Q Consensus 111 ~~v~~~v~s~~~a~~a~-~~g~D~ivv~G~eaGGh~~~~~~~~~ll~~i~~~~~~~~iPviaaGGI~~~~~v~~al~~GA 189 (332)
..++..+.+.+++.... +..+|.|++.-.-. ....+.++..+++... ++|||+-.+-.+.+.+.+++..||
T Consensus 29 ~~~v~~~~~~~~al~~~~~~~~dlvilD~~lp------~~~g~~~~~~l~~~~~--~~~ii~ls~~~~~~~~~~~~~~ga 100 (133)
T 3b2n_A 29 FEILADTDNGLDAMKLIEEYNPNVVILDIEMP------GMTGLEVLAEIRKKHL--NIKVIIVTTFKRPGYFEKAVVNDV 100 (133)
T ss_dssp EEEEEEESCHHHHHHHHHHHCCSEEEECSSCS------SSCHHHHHHHHHHTTC--SCEEEEEESCCCHHHHHHHHHTTC
T ss_pred cEEEEEcCCHHHHHHHHhhcCCCEEEEecCCC------CCCHHHHHHHHHHHCC--CCcEEEEecCCCHHHHHHHHHcCC
Confidence 45666778887776654 45789999843211 1133677777776432 689999988888889999999999
Q ss_pred ceeee
Q 020013 190 QGICL 194 (332)
Q Consensus 190 ~gV~~ 194 (332)
+++..
T Consensus 101 ~~~l~ 105 (133)
T 3b2n_A 101 DAYVL 105 (133)
T ss_dssp SEEEE
T ss_pred cEEEE
Confidence 98764
|
| >3flu_A DHDPS, dihydrodipicolinate synthase; TIM barrel, beta-alpha-barrel, amino-acid biosynthesis, diaminopimelate biosynthesis; 2.00A {Neisseria meningitidis serogroup B} SCOP: c.1.10.0 | Back alignment and structure |
|---|
Probab=88.55 E-value=2.5 Score=37.97 Aligned_cols=133 Identities=14% Similarity=0.175 Sum_probs=74.1
Q ss_pred HHHHHHHhcCCcEEEEc--cCCC----cH---HHHHHHHh---CCCEEEEecC--C----HHHHHHHHHcCCCEEEEecC
Q 020013 78 ENIKAILSEKVAVLQVS--WGEY----SE---ELVLEAHS---AGVKVVPQVG--S----FDEARKAVNAGVDAIIVQGR 139 (332)
Q Consensus 78 ~~~~~~~~~~~~~I~~~--~g~~----~~---~~i~~~~~---~g~~v~~~v~--s----~~~a~~a~~~g~D~ivv~G~ 139 (332)
..++.+++.|++.+.+. .|.. .+ ++++...+ ..++|+..++ + ++.++.+.+.|+|++.+..+
T Consensus 32 ~lv~~li~~Gv~gl~~~GttGE~~~Ls~~Er~~v~~~~~~~~~grvpviaGvg~~~t~~ai~la~~a~~~Gadavlv~~P 111 (297)
T 3flu_A 32 DLIDWHIENGTDGIVAVGTTGESATLSVEEHTAVIEAVVKHVAKRVPVIAGTGANNTVEAIALSQAAEKAGADYTLSVVP 111 (297)
T ss_dssp HHHHHHHHTTCCEEEESSTTTTGGGSCHHHHHHHHHHHHHHHTTSSCEEEECCCSSHHHHHHHHHHHHHTTCSEEEEECC
T ss_pred HHHHHHHHcCCCEEEeCccccCcccCCHHHHHHHHHHHHHHhCCCCcEEEeCCCcCHHHHHHHHHHHHHcCCCEEEECCC
Confidence 44566677888887764 1221 12 23333322 2478887765 3 34566788999999998665
Q ss_pred CCCcccCCCCchhhhHHHHHHHhCCCCCcEEee-----cCc-CCHHHHHHHHHcCcceeeeccccccCccCCCCHHHHHH
Q 020013 140 EAGGHVIGQDGLISLLPMVVDLIGDRDIPIIAA-----GGI-VDARGYVAALSLGAQGICLGTRFVASEESYAHPEYKRK 213 (332)
Q Consensus 140 eaGGh~~~~~~~~~ll~~i~~~~~~~~iPviaa-----GGI-~~~~~v~~al~~GA~gV~~GT~fl~t~Es~~~~~~k~~ 213 (332)
..-.. .+........++.++. ++||+.= -|+ -+++.+.+..+. -.+..-+|+..+-.+-..
T Consensus 112 ~y~~~--~~~~l~~~f~~va~a~---~lPiilYn~P~~tg~~l~~~~~~~La~~--------pnivgiKdssgd~~~~~~ 178 (297)
T 3flu_A 112 YYNKP--SQEGIYQHFKTIAEAT---SIPMIIYNVPGRTVVSMTNDTILRLAEI--------PNIVGVKEASGNIGSNIE 178 (297)
T ss_dssp CSSCC--CHHHHHHHHHHHHHHC---CSCEEEEECHHHHSSCCCHHHHHHHTTS--------TTEEEEEECSCCHHHHHH
T ss_pred CCCCC--CHHHHHHHHHHHHHhC---CCCEEEEECCchhccCCCHHHHHHHHcC--------CCEEEEEeCCCCHHHHHH
Confidence 32211 2234566777888876 7888753 233 255665554321 234555677655444444
Q ss_pred HhcCCCceEE
Q 020013 214 LVEMDKTEYT 223 (332)
Q Consensus 214 ~~~~~~t~~t 223 (332)
+.+....++.
T Consensus 179 ~~~~~~~~f~ 188 (297)
T 3flu_A 179 LINRAPEGFV 188 (297)
T ss_dssp HHHHSCTTCE
T ss_pred HHHhcCCCeE
Confidence 4443333333
|
| >3gk0_A PNP synthase, pyridoxine 5'-phosphate synthase; decode, ssgcid, niaid, SBRI, cytoplasm, pyridoxine biosynthesis, transferase; HET: DXP; 2.28A {Burkholderia pseudomallei} | Back alignment and structure |
|---|
Probab=88.51 E-value=6.7 Score=34.57 Aligned_cols=173 Identities=18% Similarity=0.140 Sum_probs=97.8
Q ss_pred CCcHHHHHHHH-hCCCceeecCCCCCCHHH-HHHHHHHHHhhcCCcEEEEeecCCCCHHHHHHHHhcCCcEEEEc-----
Q 020013 22 ISGPELVAAVA-NAGGLGLLRAPDWEAPDY-LRDLIRKTRSLTERPFGVGVVLAFPHNENIKAILSEKVAVLQVS----- 94 (332)
Q Consensus 22 ~s~~~la~avs-~aGglG~i~~~~~~~~e~-~~~~i~~~r~~~~~p~gvnl~~~~~~~~~~~~~~~~~~~~I~~~----- 94 (332)
..+|--++.++ .+|+=|+..-.+- +-.. -...+..+++....++++-... .++.++.+++.+|+.|.+-
T Consensus 52 ~PDpv~aA~~ae~aGAdGITvHlRe-DrRHI~d~Dv~~L~~~i~t~lNlEma~---t~emi~ial~~kP~~vtLVPEkre 127 (278)
T 3gk0_A 52 YPDPVRAALAAEDAGADAITLHLRE-DRRHIVDADVRTLRPRVKTRMNLECAV---TPEMLDIACEIRPHDACLVPEKRS 127 (278)
T ss_dssp CSCHHHHHHHHHHTTCSEEEEECCT-TCSSSCHHHHHHHHHHCSSCEEEEECS---SHHHHHHHHHHCCSEEEECCCSGG
T ss_pred CCCHHHHHHHHHHcCCCEEEeccCC-CcccCCHHHHHHHHHHcCCCEEeecCC---CHHHHHHHHHcCCCEEEECCCCCC
Confidence 34665566555 4565565432211 1000 1223455555555666554332 4789999999999999763
Q ss_pred -----cCCC-------cHHHHHHHHhCCCEEEEecC-CHHHHHHHHHcCCCEEEEe-cCCCCcccCC-CCchhhhHHHHH
Q 020013 95 -----WGEY-------SEELVLEAHSAGVKVVPQVG-SFDEARKAVNAGVDAIIVQ-GREAGGHVIG-QDGLISLLPMVV 159 (332)
Q Consensus 95 -----~g~~-------~~~~i~~~~~~g~~v~~~v~-s~~~a~~a~~~g~D~ivv~-G~eaGGh~~~-~~~~~~ll~~i~ 159 (332)
.|.. ..++++++++.|++|-.-+. +++..+.+.+.|+|.|=+. |..+--+... ...-+..+....
T Consensus 128 E~TTegGlDv~~~~~~L~~~i~~L~~~GIrVSLFIDpd~~qI~aA~~~GAd~IELhTG~YA~a~~~~~~~~el~rl~~aA 207 (278)
T 3gk0_A 128 ELTTEGGLDVVGHFDAVRAACKQLADAGVRVSLFIDPDEAQIRAAHETGAPVIELHTGRYADAHDAAEQQREFERIATGV 207 (278)
T ss_dssp GBCSSSSBCTTTTHHHHHHHHHHHHHTTCEEEEEECSCHHHHHHHHHHTCSEEEECCHHHHTCSSHHHHHHHHHHHHHHH
T ss_pred CcCCCcchhhhccHHHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHhCcCEEEEecchhhccCCchhHHHHHHHHHHHH
Confidence 1211 23578889999998765554 6788889999999999772 2211111000 001122222222
Q ss_pred HHhCCCCCcEEeecCcCCHHHHHHHHHc-Ccceeeeccccc
Q 020013 160 DLIGDRDIPIIAAGGIVDARGYVAALSL-GAQGICLGTRFV 199 (332)
Q Consensus 160 ~~~~~~~iPviaaGGI~~~~~v~~al~~-GA~gV~~GT~fl 199 (332)
+.....++-|=+.-|+ |.+|+....+. +-.-+-+|-+++
T Consensus 208 ~~A~~lGL~VnAGHGL-~y~Nv~~ia~ip~i~ElnIGHaiI 247 (278)
T 3gk0_A 208 DAGIALGLKVNAGHGL-HYTNVQAIAALPGIAELNIGHAIV 247 (278)
T ss_dssp HHHHHTTCEEEECTTC-CTTTHHHHHTCTTEEEEEECHHHH
T ss_pred HHHHHcCCEEecCCCC-CHHHHHHHHhCCCCeEEecCHHHH
Confidence 2211136888899999 78998754332 445666665543
|
| >1mb3_A Cell division response regulator DIVK; signal transduction protein, structural proteomics in europe, spine, structural genomics; 1.41A {Caulobacter vibrioides} SCOP: c.23.1.1 PDB: 1m5u_A 1mav_A 1mb0_A 1m5t_A | Back alignment and structure |
|---|
Probab=88.50 E-value=4.5 Score=29.72 Aligned_cols=84 Identities=11% Similarity=-0.015 Sum_probs=51.2
Q ss_pred HHHHhCCCEEEEecCCHHHHHHHH-HcCCCEEEEecCCCCcccCCCCchhhhHHHHHHHhCCCCCcEEeecCcCCHHHHH
Q 020013 104 LEAHSAGVKVVPQVGSFDEARKAV-NAGVDAIIVQGREAGGHVIGQDGLISLLPMVVDLIGDRDIPIIAAGGIVDARGYV 182 (332)
Q Consensus 104 ~~~~~~g~~v~~~v~s~~~a~~a~-~~g~D~ivv~G~eaGGh~~~~~~~~~ll~~i~~~~~~~~iPviaaGGI~~~~~v~ 182 (332)
+.++..|..+. .+.+..++.... +..+|.|++.-.-. ....+.++..+++......+|++.-.+-.+.+...
T Consensus 19 ~~L~~~~~~v~-~~~~~~~a~~~~~~~~~dlvi~D~~l~------~~~g~~~~~~l~~~~~~~~~~ii~~s~~~~~~~~~ 91 (124)
T 1mb3_A 19 DLLEAQGYETL-QTREGLSALSIARENKPDLILMDIQLP------EISGLEVTKWLKEDDDLAHIPVVAVTAFAMKGDEE 91 (124)
T ss_dssp HHHHHTTCEEE-EESCHHHHHHHHHHHCCSEEEEESBCS------SSBHHHHHHHHHHSTTTTTSCEEEEC------CHH
T ss_pred HHHHHcCcEEE-EeCCHHHHHHHHhcCCCCEEEEeCCCC------CCCHHHHHHHHHcCccccCCcEEEEECCCCHHHHH
Confidence 34556677765 567777776544 45799999853211 11336677777763211268999888877788888
Q ss_pred HHHHcCcceeee
Q 020013 183 AALSLGAQGICL 194 (332)
Q Consensus 183 ~al~~GA~gV~~ 194 (332)
.++..||+++..
T Consensus 92 ~~~~~g~~~~l~ 103 (124)
T 1mb3_A 92 RIREGGCEAYIS 103 (124)
T ss_dssp HHHHHTCSEEEC
T ss_pred HHHhCCCCEEEe
Confidence 999999998763
|
| >1ub3_A Aldolase protein; schiff base, deoxyribose phosphate, carbinolamine, structural genomics, riken structural genomics/proteomics initiative; HET: HPD; 1.40A {Thermus thermophilus} SCOP: c.1.10.1 PDB: 1j2w_A* | Back alignment and structure |
|---|
Probab=88.46 E-value=1.5 Score=37.76 Aligned_cols=76 Identities=20% Similarity=0.134 Sum_probs=51.8
Q ss_pred HHHHHHHHcCCCEEEEe-cC--CCCcccCCCCchhhhHHHHHHHhCCCCCcEEeecCcCCHHHHHHHH----HcCcceee
Q 020013 121 DEARKAVNAGVDAIIVQ-GR--EAGGHVIGQDGLISLLPMVVDLIGDRDIPIIAAGGIVDARGYVAAL----SLGAQGIC 193 (332)
Q Consensus 121 ~~a~~a~~~g~D~ivv~-G~--eaGGh~~~~~~~~~ll~~i~~~~~~~~iPviaaGGI~~~~~v~~al----~~GA~gV~ 193 (332)
.+++.|.+.|+|.|-+. +. .-.|+ ......-+.++++......+|||..=+.-+.+.+..+- .+|||.|-
T Consensus 75 ~e~~~Ai~~GAdevd~vinig~~~~g~---~~~v~~ei~~v~~a~~~~~lkvIlet~~l~~e~i~~a~~ia~eaGADfVK 151 (220)
T 1ub3_A 75 LEAALACARGADEVDMVLHLGRAKAGD---LDYLEAEVRAVREAVPQAVLKVILETGYFSPEEIARLAEAAIRGGADFLK 151 (220)
T ss_dssp HHHHHHHHTTCSEEEEECCHHHHHTTC---HHHHHHHHHHHHHHSTTSEEEEECCGGGSCHHHHHHHHHHHHHHTCSEEE
T ss_pred HHHHHHHHcCCCEEEecccchhhhCCC---HHHHHHHHHHHHHHHcCCCceEEEecCCCCHHHHHHHHHHHHHhCCCEEE
Confidence 57888999999998663 22 10111 12335566677776643357888887887888776554 47999999
Q ss_pred eccccc
Q 020013 194 LGTRFV 199 (332)
Q Consensus 194 ~GT~fl 199 (332)
..|.|.
T Consensus 152 TsTGf~ 157 (220)
T 1ub3_A 152 TSTGFG 157 (220)
T ss_dssp CCCSSS
T ss_pred eCCCCC
Confidence 999886
|
| >2a9o_A Response regulator; essential protein, YYCF/YYCG homolog, signaling protein; 1.65A {Streptococcus pneumoniae} SCOP: c.23.1.1 PDB: 1nxo_A 1nxs_A 1nxv_A 1nxw_A 1nxx_A 1nxp_A 2a9p_A 2a9q_A 1nxt_A* 2a9r_A* | Back alignment and structure |
|---|
Probab=88.43 E-value=5.7 Score=28.87 Aligned_cols=81 Identities=19% Similarity=0.145 Sum_probs=55.0
Q ss_pred HHHHhCCCEEEEecCCHHHHHHHH-HcCCCEEEEecCCCCcccCCCCchhhhHHHHHHHhCCCCCcEEeecCcCCHHHHH
Q 020013 104 LEAHSAGVKVVPQVGSFDEARKAV-NAGVDAIIVQGREAGGHVIGQDGLISLLPMVVDLIGDRDIPIIAAGGIVDARGYV 182 (332)
Q Consensus 104 ~~~~~~g~~v~~~v~s~~~a~~a~-~~g~D~ivv~G~eaGGh~~~~~~~~~ll~~i~~~~~~~~iPviaaGGI~~~~~v~ 182 (332)
..+...|..+. .+.+.+++.... ...+|.+++.-.-. ....+.++..+++.. .+|++.-.+-.+.....
T Consensus 19 ~~l~~~~~~v~-~~~~~~~a~~~~~~~~~dlvl~D~~l~------~~~g~~~~~~l~~~~---~~~ii~~s~~~~~~~~~ 88 (120)
T 2a9o_A 19 FNMTKEGYEVV-TAFNGREALEQFEAEQPDIIILDLMLP------EIDGLEVAKTIRKTS---SVPILMLSAKDSEFDKV 88 (120)
T ss_dssp HHHHHTTCEEE-EESSHHHHHHHHHHHCCSEEEECSSCS------SSCHHHHHHHHHHHC---CCCEEEEESCCSHHHHH
T ss_pred HHHHhcCcEEE-EecCHHHHHHHHHhCCCCEEEEeccCC------CCCHHHHHHHHHhCC---CCCEEEEecCCchHHHH
Confidence 34455677765 567777776544 45799998843211 112356777777632 68988887777888888
Q ss_pred HHHHcCcceeee
Q 020013 183 AALSLGAQGICL 194 (332)
Q Consensus 183 ~al~~GA~gV~~ 194 (332)
.++..||+++..
T Consensus 89 ~~~~~g~~~~l~ 100 (120)
T 2a9o_A 89 IGLELGADDYVT 100 (120)
T ss_dssp HHHHHTCSEEEE
T ss_pred HHHhCCHhheEe
Confidence 999999998764
|
| >2wqp_A Polysialic acid capsule biosynthesis protein SIAC; NEUB, inhibitor, TIM barrel, sialic acid synthase, transfera; HET: WQP; 1.75A {Neisseria meningitidis} PDB: 2zdr_A 1xuz_A* 1xuu_A 3cm4_A | Back alignment and structure |
|---|
Probab=88.38 E-value=2.2 Score=39.37 Aligned_cols=74 Identities=18% Similarity=0.213 Sum_probs=58.0
Q ss_pred HHHHHHHhCCCEEEEecCCHHHHHHHHHcCCCEEEEecCCCCcccCCCCchhhhHHHHHHHhCCCCCcEEeecCcCCHHH
Q 020013 101 ELVLEAHSAGVKVVPQVGSFDEARKAVNAGVDAIIVQGREAGGHVIGQDGLISLLPMVVDLIGDRDIPIIAAGGIVDARG 180 (332)
Q Consensus 101 ~~i~~~~~~g~~v~~~v~s~~~a~~a~~~g~D~ivv~G~eaGGh~~~~~~~~~ll~~i~~~~~~~~iPviaaGGI~~~~~ 180 (332)
.+.+.+++.|+.++..+-+.+.+..+.+.++|++-+-- +....+.||+.+.+. +.|||..=|.+|-+.
T Consensus 95 ~L~~~~~~~Gi~~~st~~d~~svd~l~~~~v~~~KI~S--------~~~~n~~LL~~va~~----gkPviLstGmat~~E 162 (349)
T 2wqp_A 95 KLKEYVESKGMIFISTLFSRAAALRLQRMDIPAYKIGS--------GECNNYPLIKLVASF----GKPIILSTGMNSIES 162 (349)
T ss_dssp HHHHHHHHTTCEEEEEECSHHHHHHHHHHTCSCEEECG--------GGTTCHHHHHHHHTT----CSCEEEECTTCCHHH
T ss_pred HHHHHHHHhCCeEEEeeCCHHHHHHHHhcCCCEEEECc--------ccccCHHHHHHHHhc----CCeEEEECCCCCHHH
Confidence 34455667899999999999999989899999998811 123347788877653 789999999999999
Q ss_pred HHHHHH
Q 020013 181 YVAALS 186 (332)
Q Consensus 181 v~~al~ 186 (332)
+..+..
T Consensus 163 i~~Ave 168 (349)
T 2wqp_A 163 IKKSVE 168 (349)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 876654
|
| >4eiv_A Deoxyribose-phosphate aldolase; chemotherapy, brain cysts, bradyzoite, structural genomics, for structural genomics of infectious diseases; 1.37A {Toxoplasma gondii} PDB: 3qyq_A* | Back alignment and structure |
|---|
Probab=88.34 E-value=0.63 Score=41.72 Aligned_cols=114 Identities=21% Similarity=0.179 Sum_probs=62.0
Q ss_pred HHHHHhcCCcEEEEc--cCCC-------cH---HHHHHHHh----CCCEEEEec---CCHHH----HHHHHHcCCCEEEE
Q 020013 80 IKAILSEKVAVLQVS--WGEY-------SE---ELVLEAHS----AGVKVVPQV---GSFDE----ARKAVNAGVDAIIV 136 (332)
Q Consensus 80 ~~~~~~~~~~~I~~~--~g~~-------~~---~~i~~~~~----~g~~v~~~v---~s~~~----a~~a~~~g~D~ivv 136 (332)
.+.+++.|++=|.+- .|.. .. +.++.+++ .-+|||... ++.+. .+.+.++|+|+|.-
T Consensus 106 a~~Av~~GAdEIDmVinig~lk~~~~g~~~~V~~eI~~v~~a~~~~~lKVIlEt~~Lt~~e~i~~A~~ia~~AGADFVKT 185 (297)
T 4eiv_A 106 AVGALKDGADEIECLIDWRRMNENVADGESRIRLLVSEVKKVVGPKTLKVVLSGGELQGGDIISRAAVAALEGGADFLQT 185 (297)
T ss_dssp HHHHHHTTCSEEEEECCTHHHHHCHHHHHHHHHHHHHHHHHHHTTSEEEEECCSSCCCCHHHHHHHHHHHHHHTCSEEEC
T ss_pred HHHHHHcCCCEEEeeeeHHHHhcccCCcHHHHHHHHHHHHHHhcCCceEEEEecccCCcHHHHHHHHHHHHHhCCCEEEc
Confidence 455777898877653 2210 01 11222332 235666543 23332 23467899999986
Q ss_pred -ecCCCCcccCCCCchhhhHHHHHHHh----------------C--CCCCcEEee-cCcCCHHHHHHHHHcCcceeeecc
Q 020013 137 -QGREAGGHVIGQDGLISLLPMVVDLI----------------G--DRDIPIIAA-GGIVDARGYVAALSLGAQGICLGT 196 (332)
Q Consensus 137 -~G~eaGGh~~~~~~~~~ll~~i~~~~----------------~--~~~iPviaa-GGI~~~~~v~~al~~GA~gV~~GT 196 (332)
.|+..+|- ......++.+..+.. . +.++-|=++ |||.|.+++.+++.+... +|.
T Consensus 186 STGf~~~gA---T~edV~lM~~~v~~~~~~~~~~~~~~~~~~~~~tg~~vgvKAs~GGIrt~e~A~~~i~~~~e---lG~ 259 (297)
T 4eiv_A 186 SSGLGATHA---TMFTVHLISIALREYMVRENERIRVEGINREGAAVRCIGIKIEVGDVHMAETADFLMQMIFE---NGP 259 (297)
T ss_dssp CCSSSSCCC---CHHHHHHHHHHHHHHHCC------------------CCEEEEECTTCCHHHHHHHHHHHHHH---HCG
T ss_pred CCCCCCCCC---CHHHHHHHHHHHHHHhccccccccccccccccccCCceeEEecCCCCCCHHHHHHHHHHHHH---hCc
Confidence 45543332 223344444433211 0 126889999 999999999999985433 444
Q ss_pred ccc
Q 020013 197 RFV 199 (332)
Q Consensus 197 ~fl 199 (332)
.++
T Consensus 260 ~wl 262 (297)
T 4eiv_A 260 RSI 262 (297)
T ss_dssp GGC
T ss_pred ccc
Confidence 443
|
| >3daq_A DHDPS, dihydrodipicolinate synthase; lysine biosynthesis, amino-ACI biosynthesis, diaminopimelate biosynthesis, lyase, schiff B; 1.45A {Staphylococcus aureus} SCOP: c.1.10.0 PDB: 3di1_A 3di0_A | Back alignment and structure |
|---|
Probab=88.30 E-value=2.6 Score=37.76 Aligned_cols=127 Identities=16% Similarity=0.245 Sum_probs=74.8
Q ss_pred HHHHHHHhcCCcEEEEc--cCCC----cH---HHHHHHHh---CCCEEEEecC--CH----HHHHHHHHcCCCEEEEecC
Q 020013 78 ENIKAILSEKVAVLQVS--WGEY----SE---ELVLEAHS---AGVKVVPQVG--SF----DEARKAVNAGVDAIIVQGR 139 (332)
Q Consensus 78 ~~~~~~~~~~~~~I~~~--~g~~----~~---~~i~~~~~---~g~~v~~~v~--s~----~~a~~a~~~g~D~ivv~G~ 139 (332)
..++.+++.|++.+.+. -|.. .+ ++++...+ ..++|+..++ +. +.++.+.+.|+|++.+..+
T Consensus 27 ~lv~~li~~Gv~gl~v~GttGE~~~Lt~~Er~~v~~~~~~~~~grvpviaGvg~~~t~~ai~la~~a~~~Gadavlv~~P 106 (292)
T 3daq_A 27 AHVNFLLENNAQAIIVNGTTAESPTLTTDEKELILKTVIDLVDKRVPVIAGTGTNDTEKSIQASIQAKALGADAIMLITP 106 (292)
T ss_dssp HHHHHHHHTTCCEEEESSGGGTGGGSCHHHHHHHHHHHHHHHTTSSCEEEECCCSCHHHHHHHHHHHHHHTCSEEEEECC
T ss_pred HHHHHHHHcCCCEEEECccccccccCCHHHHHHHHHHHHHHhCCCCcEEEeCCcccHHHHHHHHHHHHHcCCCEEEECCC
Confidence 45666778899988764 1221 12 23333332 3578887775 33 4556788899999998765
Q ss_pred CCCcccCCCCchhhhHHHHHHHhCCCCCcEEee-----cCc-CCHHHHHHHHHcCcceeeeccccccCccCCCCHHHHHH
Q 020013 140 EAGGHVIGQDGLISLLPMVVDLIGDRDIPIIAA-----GGI-VDARGYVAALSLGAQGICLGTRFVASEESYAHPEYKRK 213 (332)
Q Consensus 140 eaGGh~~~~~~~~~ll~~i~~~~~~~~iPviaa-----GGI-~~~~~v~~al~~GA~gV~~GT~fl~t~Es~~~~~~k~~ 213 (332)
..-.. .+........++.++. ++||+.= .|+ -+++.+.+.... -.+..-+|+..+-.+-+.
T Consensus 107 ~y~~~--~~~~l~~~f~~ia~a~---~lPiilYn~P~~tg~~l~~~~~~~La~~--------pnivgiK~ssgd~~~~~~ 173 (292)
T 3daq_A 107 YYNKT--NQRGLVKHFEAIADAV---KLPVVLYNVPSRTNMTIEPETVEILSQH--------PYIVALKDATNDFEYLEE 173 (292)
T ss_dssp CSSCC--CHHHHHHHHHHHHHHH---CSCEEEEECHHHHSCCCCHHHHHHHHTS--------TTEEEEEECCCCHHHHHH
T ss_pred CCCCC--CHHHHHHHHHHHHHhC---CCCEEEEecccccCCCCCHHHHHHHhcC--------CCEEEEEeCCCCHHHHHH
Confidence 32211 2234567778888887 7888753 233 256666655432 234556777666555455
Q ss_pred HhcC
Q 020013 214 LVEM 217 (332)
Q Consensus 214 ~~~~ 217 (332)
+.+.
T Consensus 174 ~~~~ 177 (292)
T 3daq_A 174 VKKR 177 (292)
T ss_dssp HHTT
T ss_pred HHHH
Confidence 5554
|
| >1u83_A Phosphosulfolactate synthase; structural genomics, phosphosulfolactate PSI, protein structure initiative, midwest center for struc genomics; 2.20A {Bacillus subtilis} SCOP: c.1.27.1 | Back alignment and structure |
|---|
Probab=88.25 E-value=1 Score=39.95 Aligned_cols=93 Identities=20% Similarity=0.289 Sum_probs=56.2
Q ss_pred CHHHHHHHHHHHHhhcCCcEEE-Eee-----cCCCCHHHHHHHHhcCCcEEEEccCC---CcH---HHHHHHHhCCCEEE
Q 020013 47 APDYLRDLIRKTRSLTERPFGV-GVV-----LAFPHNENIKAILSEKVAVLQVSWGE---YSE---ELVLEAHSAGVKVV 114 (332)
Q Consensus 47 ~~e~~~~~i~~~r~~~~~p~gv-nl~-----~~~~~~~~~~~~~~~~~~~I~~~~g~---~~~---~~i~~~~~~g~~v~ 114 (332)
.|+ +++.++..++. +.++.. +.+ .....+++++.+.+.|.++|.++-|. +.. ++++.+++. .+|+
T Consensus 79 ~~~-l~ekI~l~~~~-gV~v~~GGTlfE~~l~qg~~~~yl~~~k~lGF~~IEISdGti~l~~~~~~~lI~~a~~~-f~Vl 155 (276)
T 1u83_A 79 TKD-LEEKISTLKEH-DITFFFGGTLFEKYVSQKKVNEFHRYCTYFGCEYIEISNGTLPMTNKEKAAYIADFSDE-FLVL 155 (276)
T ss_dssp CTT-HHHHHHHHHHT-TCEEEECHHHHHHHHHTTCHHHHHHHHHHTTCSEEEECCSSSCCCHHHHHHHHHHHTTT-SEEE
T ss_pred hHH-HHHHHHHHHHc-CCeEeCCcHHHHHHHHcCcHHHHHHHHHHcCCCEEEECCCcccCCHHHHHHHHHHHHhh-cEEe
Confidence 344 78888777764 222221 101 11123678999999999999998653 222 345555555 7777
Q ss_pred EecCC--------------HHHHHHHHHcCCCEEEEecCCCC
Q 020013 115 PQVGS--------------FDEARKAVNAGVDAIIVQGREAG 142 (332)
Q Consensus 115 ~~v~s--------------~~~a~~a~~~g~D~ivv~G~eaG 142 (332)
..++. ++.++..+++|||.|+++++|+|
T Consensus 156 ~EvG~K~~~~~~~~~~~~~I~~~~~dLeAGA~~ViiEaRESG 197 (276)
T 1u83_A 156 SEVGSKDAELASRQSSEEWLEYIVEDMEAGAEKVITEARESG 197 (276)
T ss_dssp EECSCCC------CCSTHHHHHHHHHHHHTEEEEEEC-----
T ss_pred eeccccCccccCCCCHHHHHHHHHHHHHCCCcEEEEeeeccC
Confidence 66541 24566678999999999999976
|
| >1rvk_A Isomerase/lactonizing enzyme; enolase superfamily, MR.GI-17937161, NYSGXRC, target T1522, structural genomics, PSI; 1.70A {Agrobacterium tumefaciens} SCOP: c.1.11.2 d.54.1.1 | Back alignment and structure |
|---|
Probab=88.23 E-value=7.6 Score=35.86 Aligned_cols=106 Identities=11% Similarity=0.111 Sum_probs=72.6
Q ss_pred HHHHHhcCCcEEEEccCC-------CcH---HHHHHHHh---CCCEEEEecC---CHHHHHH----HHHcCCCEEEEecC
Q 020013 80 IKAILSEKVAVLQVSWGE-------YSE---ELVLEAHS---AGVKVVPQVG---SFDEARK----AVNAGVDAIIVQGR 139 (332)
Q Consensus 80 ~~~~~~~~~~~I~~~~g~-------~~~---~~i~~~~~---~g~~v~~~v~---s~~~a~~----a~~~g~D~ivv~G~ 139 (332)
++.+.+.|.+.+-++.|. .+. +.++.+++ .++++...++ +.+++.. ..+.++++| +-+
T Consensus 157 a~~~~~~Gf~~iKik~g~~~~~~~~~~~~~~e~v~avr~a~g~d~~l~vDan~~~~~~~a~~~~~~l~~~~i~~i--E~P 234 (382)
T 1rvk_A 157 AETLVKRGYKGIKLHTWMPPVSWAPDVKMDLKACAAVREAVGPDIRLMIDAFHWYSRTDALALGRGLEKLGFDWI--EEP 234 (382)
T ss_dssp HHHHHHHTCSEEEEECCCTTSTTCCCHHHHHHHHHHHHHHHCTTSEEEEECCTTCCHHHHHHHHHHHHTTTCSEE--ECC
T ss_pred HHHHHHCCCCEEEEcCCcCccccccchHHHHHHHHHHHHHhCCCCeEEEECCCCCCHHHHHHHHHHHHhcCCCEE--eCC
Confidence 344556799999988775 223 44555555 3678887765 6666643 345678765 322
Q ss_pred CCCcccCCCCchhhhHHHHHHHhCCCCCcEEeecCcCC-HHHHHHHHHcC-cceeeeccc
Q 020013 140 EAGGHVIGQDGLISLLPMVVDLIGDRDIPIIAAGGIVD-ARGYVAALSLG-AQGICLGTR 197 (332)
Q Consensus 140 eaGGh~~~~~~~~~ll~~i~~~~~~~~iPviaaGGI~~-~~~v~~al~~G-A~gV~~GT~ 197 (332)
-+...+..+.++++.+ ++||++.+.+.+ ..++.+++..| +|.|++--.
T Consensus 235 -------~~~~~~~~~~~l~~~~---~iPIa~dE~~~~~~~~~~~~i~~~~~d~v~ik~~ 284 (382)
T 1rvk_A 235 -------MDEQSLSSYKWLSDNL---DIPVVGPESAAGKHWHRAEWIKAGACDILRTGVN 284 (382)
T ss_dssp -------SCTTCHHHHHHHHHHC---SSCEEECSSCSSHHHHHHHHHHTTCCSEEEECHH
T ss_pred -------CChhhHHHHHHHHhhC---CCCEEEeCCccCcHHHHHHHHHcCCCCEEeeCch
Confidence 1112466677777776 799999999999 99999999987 688887443
|
| >3cfy_A Putative LUXO repressor protein; structural genomics, unknown function, uncharacterized protein, signal receiver domain; 2.50A {Vibrio parahaemolyticus rimd 2210633} | Back alignment and structure |
|---|
Probab=88.22 E-value=4.1 Score=30.98 Aligned_cols=80 Identities=13% Similarity=0.015 Sum_probs=55.4
Q ss_pred HHhCCCEEEEecCCHHHHHHHH-HcCCCEEEEecCCCCcccCCCCchhhhHHHHHHHhCCCCCcEEeecCcCCHHHHHHH
Q 020013 106 AHSAGVKVVPQVGSFDEARKAV-NAGVDAIIVQGREAGGHVIGQDGLISLLPMVVDLIGDRDIPIIAAGGIVDARGYVAA 184 (332)
Q Consensus 106 ~~~~g~~v~~~v~s~~~a~~a~-~~g~D~ivv~G~eaGGh~~~~~~~~~ll~~i~~~~~~~~iPviaaGGI~~~~~v~~a 184 (332)
+...|..+. .+.+.+++.... ...+|.|++.-.-.+ ...+.++..+++... .+|||...+-.+.+.+..+
T Consensus 24 L~~~g~~v~-~~~~~~~a~~~l~~~~~dlvllD~~l~~------~~g~~l~~~l~~~~~--~~~ii~ls~~~~~~~~~~~ 94 (137)
T 3cfy_A 24 VKDEPYDIF-HVETGRDAIQFIERSKPQLIILDLKLPD------MSGEDVLDWINQNDI--PTSVIIATAHGSVDLAVNL 94 (137)
T ss_dssp TTTSSSEEE-EESSHHHHHHHHHHHCCSEEEECSBCSS------SBHHHHHHHHHHTTC--CCEEEEEESSCCHHHHHHH
T ss_pred HHhcCceEE-EeCCHHHHHHHHHhcCCCEEEEecCCCC------CCHHHHHHHHHhcCC--CCCEEEEEecCcHHHHHHH
Confidence 444577654 677777776654 457999998532111 123667777776432 6899988888788889999
Q ss_pred HHcCcceeee
Q 020013 185 LSLGAQGICL 194 (332)
Q Consensus 185 l~~GA~gV~~ 194 (332)
+..||+++..
T Consensus 95 ~~~ga~~~l~ 104 (137)
T 3cfy_A 95 IQKGAEDFLE 104 (137)
T ss_dssp HHTTCSEEEE
T ss_pred HHCCccEEEe
Confidence 9999998764
|
| >1i3c_A Response regulator RCP1; phytochrome, signaling protein; 1.90A {Synechocystis SP} SCOP: c.23.1.1 PDB: 1jlk_A | Back alignment and structure |
|---|
Probab=88.20 E-value=7 Score=30.05 Aligned_cols=83 Identities=8% Similarity=0.023 Sum_probs=55.7
Q ss_pred HHhCCC-EEEEecCCHHHHHHHHH--------cCCCEEEEecCCCCcccCCCCchhhhHHHHHHHhCCCCCcEEeecCcC
Q 020013 106 AHSAGV-KVVPQVGSFDEARKAVN--------AGVDAIIVQGREAGGHVIGQDGLISLLPMVVDLIGDRDIPIIAAGGIV 176 (332)
Q Consensus 106 ~~~~g~-~v~~~v~s~~~a~~a~~--------~g~D~ivv~G~eaGGh~~~~~~~~~ll~~i~~~~~~~~iPviaaGGI~ 176 (332)
++..|. ..+..+.+.+++..... ..+|.|++.=.-. ....+.++..+++.....++|||+-.+-.
T Consensus 28 L~~~~~~~~v~~~~~~~~al~~l~~~~~~~~~~~~dlillD~~lp------~~~g~~l~~~l~~~~~~~~~piiils~~~ 101 (149)
T 1i3c_A 28 LKTSTIDHELIILRDGLAAMAFLQQQGEYENSPRPNLILLDLNLP------KKDGREVLAEIKQNPDLKRIPVVVLTTSH 101 (149)
T ss_dssp HHSCCSCEEEEEECSHHHHHHHHTTCGGGTTCCCCSEEEECSCCS------SSCHHHHHHHHHHCTTTTTSCEEEEESCC
T ss_pred HHhcCCCccEEEeCCHHHHHHHHHhccccccCCCCCEEEEeCCCC------CCcHHHHHHHHHhCcCcCCCeEEEEECCC
Confidence 444454 24556778888877665 3689999842211 11336777777764211268998888887
Q ss_pred CHHHHHHHHHcCcceeee
Q 020013 177 DARGYVAALSLGAQGICL 194 (332)
Q Consensus 177 ~~~~v~~al~~GA~gV~~ 194 (332)
+.+.+.+++..||++...
T Consensus 102 ~~~~~~~~~~~ga~~~l~ 119 (149)
T 1i3c_A 102 NEDDVIASYELHVNCYLT 119 (149)
T ss_dssp CHHHHHHHHHTTCSEEEE
T ss_pred ChHHHHHHHHcCCcEEEE
Confidence 888999999999998764
|
| >1yad_A Regulatory protein TENI; TIM barrel, transcription; 2.10A {Bacillus subtilis} PDB: 3qh2_A* | Back alignment and structure |
|---|
Probab=88.13 E-value=4.4 Score=34.28 Aligned_cols=99 Identities=11% Similarity=0.092 Sum_probs=60.9
Q ss_pred HHHHHhcCCcEEEEcc-CCCc---HHHHHHHHhCCCE---EEEecCCHHHHHHHHHcCCCEEEEecCCCCcccCCCCchh
Q 020013 80 IKAILSEKVAVLQVSW-GEYS---EELVLEAHSAGVK---VVPQVGSFDEARKAVNAGVDAIIVQGREAGGHVIGQDGLI 152 (332)
Q Consensus 80 ~~~~~~~~~~~I~~~~-g~~~---~~~i~~~~~~g~~---v~~~v~s~~~a~~a~~~g~D~ivv~G~eaGGh~~~~~~~~ 152 (332)
++.+++.|+++|++-. +..+ .++++.+++.+.+ ++.. +....+.+.|+|+|-+.+. . ..
T Consensus 35 ~~~~~~~G~~~v~lr~~~~~~~~~~~~~~~l~~~~~~~~~l~v~----~~~~~a~~~gad~v~l~~~--------~-~~- 100 (221)
T 1yad_A 35 IIITIQNEVDFIHIRERSKSAADILKLLDLIFEGGIDKRKLVMN----GRVDIALFSTIHRVQLPSG--------S-FS- 100 (221)
T ss_dssp HHHHHGGGCSEEEECCTTSCHHHHHHHHHHHHHTTCCGGGEEEE----SCHHHHHTTTCCEEEECTT--------S-CC-
T ss_pred HHHHHHCCCCEEEEccCCCCHHHHHHHHHHHHHhcCcCCeEEEe----ChHHHHHHcCCCEEEeCCC--------c-cC-
Confidence 5566778999998742 1222 2456666665443 4433 2345677899999987211 1 11
Q ss_pred hhHHHHHHHhCCCCCcEEeecCcCCHHHHHHHHHcCcceeeecccc
Q 020013 153 SLLPMVVDLIGDRDIPIIAAGGIVDARGYVAALSLGAQGICLGTRF 198 (332)
Q Consensus 153 ~ll~~i~~~~~~~~iPviaaGGI~~~~~v~~al~~GA~gV~~GT~f 198 (332)
+..+++..+ ++ +....+.+.+++.++...|+|.|.+|+.|
T Consensus 101 --~~~~~~~~~--~~--~ig~sv~t~~~~~~a~~~gaD~i~~~~~f 140 (221)
T 1yad_A 101 --PKQIRARFP--HL--HIGRSVHSLEEAVQAEKEDADYVLFGHVF 140 (221)
T ss_dssp --HHHHHHHCT--TC--EEEEEECSHHHHHHHHHTTCSEEEEECCC
T ss_pred --HHHHHHHCC--CC--EEEEEcCCHHHHHHHHhCCCCEEEECCcc
Confidence 233333321 23 33346789999999999999999998853
|
| >2tps_A Protein (thiamin phosphate synthase); thiamin biosynthesis, TIM barrel; HET: TPS; 1.25A {Bacillus subtilis} SCOP: c.1.3.1 PDB: 1g4t_A* 3o15_A* 1g6c_A* 1g4e_A* 1g69_A* 3o16_A 1g4s_A* 1g4p_A* 1g67_A* | Back alignment and structure |
|---|
Probab=88.09 E-value=1.5 Score=37.32 Aligned_cols=101 Identities=21% Similarity=0.225 Sum_probs=61.7
Q ss_pred HHHHHHHhcCCcEEEEcc--CCC--c---HHHHHHHH----hCCCEEEEecCCHHHHHHHHHcCCCEEEEecCCCCcccC
Q 020013 78 ENIKAILSEKVAVLQVSW--GEY--S---EELVLEAH----SAGVKVVPQVGSFDEARKAVNAGVDAIIVQGREAGGHVI 146 (332)
Q Consensus 78 ~~~~~~~~~~~~~I~~~~--g~~--~---~~~i~~~~----~~g~~v~~~v~s~~~a~~a~~~g~D~ivv~G~eaGGh~~ 146 (332)
+.++.+.+.|+++|++.. +.+ . .++++.++ ..++.++.. +.+..+.+.|+|+|.+ |. .
T Consensus 35 ~~~~~~~~~G~~~i~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~v~v~v~----~~~~~a~~~gad~v~l-~~----~-- 103 (227)
T 2tps_A 35 TVVQKALKGGATLYQFREKGGDALTGEARIKFAEKAQAACREAGVPFIVN----DDVELALNLKADGIHI-GQ----E-- 103 (227)
T ss_dssp HHHHHHHHHTCSEEEECCCSTTCCCHHHHHHHHHHHHHHHHHHTCCEEEE----SCHHHHHHHTCSEEEE-CT----T--
T ss_pred HHHHHHHHCCCCEEEEecCCCCHhHHHHHHHHHHHHHHHHHHcCCeEEEc----CHHHHHHHcCCCEEEE-CC----C--
Confidence 467778889999998863 211 1 23343333 347777664 2345677889999987 22 1
Q ss_pred CCCchhhhHHHHHHHhCCCCCcEEeecCcCCHHHHHHHHHcCcceeeecccc
Q 020013 147 GQDGLISLLPMVVDLIGDRDIPIIAAGGIVDARGYVAALSLGAQGICLGTRF 198 (332)
Q Consensus 147 ~~~~~~~ll~~i~~~~~~~~iPviaaGGI~~~~~v~~al~~GA~gV~~GT~f 198 (332)
... +.++++.. +. ++..-.+.+.+++.++...|+|.+.+|+-|
T Consensus 104 -~~~----~~~~~~~~---g~-~~~~~s~~t~~e~~~a~~~g~d~v~~~~v~ 146 (227)
T 2tps_A 104 -DAN----AKEVRAAI---GD-MILGVSAHTMSEVKQAEEDGADYVGLGPIY 146 (227)
T ss_dssp -SSC----HHHHHHHH---TT-SEEEEEECSHHHHHHHHHHTCSEEEECCSS
T ss_pred -ccC----HHHHHHhc---CC-cEEEEecCCHHHHHHHHhCCCCEEEECCCc
Confidence 111 34444444 22 222222468888888889999999987654
|
| >3ilh_A Two component response regulator; NYSGXRC, PSI-II, protein S initiative, structural genomics; 2.59A {Cytophaga hutchinsonii} | Back alignment and structure |
|---|
Probab=88.06 E-value=7.1 Score=29.52 Aligned_cols=85 Identities=12% Similarity=-0.029 Sum_probs=57.7
Q ss_pred HHHHhCCCE-EEEecCCHHHHHHHHH------cCCCEEEEecCCCCcccCCCCchhhhHHHHHHHh--CCCCCcEEeecC
Q 020013 104 LEAHSAGVK-VVPQVGSFDEARKAVN------AGVDAIIVQGREAGGHVIGQDGLISLLPMVVDLI--GDRDIPIIAAGG 174 (332)
Q Consensus 104 ~~~~~~g~~-v~~~v~s~~~a~~a~~------~g~D~ivv~G~eaGGh~~~~~~~~~ll~~i~~~~--~~~~iPviaaGG 174 (332)
..++..|.. .+..+.+.+++..... ..+|.|++.-.-.+ ...+.++..+++.. ...++|+|...+
T Consensus 27 ~~l~~~~~~~~v~~~~~~~~a~~~l~~~~~~~~~~dlvi~D~~l~~------~~g~~~~~~l~~~~~~~~~~~~ii~~t~ 100 (146)
T 3ilh_A 27 TIIRMTHRVEEIQSVTSGNAAINKLNELYAAGRWPSIICIDINMPG------INGWELIDLFKQHFQPMKNKSIVCLLSS 100 (146)
T ss_dssp HHHHTTCCEEEEEEESSHHHHHHHHHHHHTSSCCCSEEEEESSCSS------SCHHHHHHHHHHHCGGGTTTCEEEEECS
T ss_pred HHHHhcCCCeeeeecCCHHHHHHHHHHhhccCCCCCEEEEcCCCCC------CCHHHHHHHHHHhhhhccCCCeEEEEeC
Confidence 334455652 4556778888876554 56999998533111 23467788887721 112689888888
Q ss_pred cCCHHHHHHHHHcC-cceeee
Q 020013 175 IVDARGYVAALSLG-AQGICL 194 (332)
Q Consensus 175 I~~~~~v~~al~~G-A~gV~~ 194 (332)
-.+.+....++..| ++++..
T Consensus 101 ~~~~~~~~~~~~~g~~~~~l~ 121 (146)
T 3ilh_A 101 SLDPRDQAKAEASDWVDYYVS 121 (146)
T ss_dssp SCCHHHHHHHHHCSSCCEEEC
T ss_pred CCChHHHHHHHhcCCcceeee
Confidence 87899999999999 998763
|
| >3tak_A DHDPS, dihydrodipicolinate synthase; TIM barrel, lysine biosynthesis, pyruvate, lyase; 1.42A {Acinetobacter baumannii} PDB: 3pud_A* 3pue_A* 3pul_A 3rk8_A 3tce_A* 3tdf_A 3u8g_A 3uqn_A 4dxv_A | Back alignment and structure |
|---|
Probab=88.03 E-value=2.1 Score=38.30 Aligned_cols=126 Identities=15% Similarity=0.265 Sum_probs=71.0
Q ss_pred HHHHHHHhcCCcEEEEc--cCCC----cH---HHHHHHHh---CCCEEEEecC--C----HHHHHHHHHcCCCEEEEecC
Q 020013 78 ENIKAILSEKVAVLQVS--WGEY----SE---ELVLEAHS---AGVKVVPQVG--S----FDEARKAVNAGVDAIIVQGR 139 (332)
Q Consensus 78 ~~~~~~~~~~~~~I~~~--~g~~----~~---~~i~~~~~---~g~~v~~~v~--s----~~~a~~a~~~g~D~ivv~G~ 139 (332)
..++.+++.|++.+.+. .|.. .+ ++++...+ ..++|+..++ + ++.++.+.+.|+|++.+..+
T Consensus 26 ~lv~~li~~Gv~gl~~~GttGE~~~Ls~~Er~~v~~~~~~~~~gr~pviaGvg~~~t~~ai~la~~a~~~Gadavlv~~P 105 (291)
T 3tak_A 26 KLVEWHIEQGTNSIVAVGTTGEASTLSMEEHTQVIKEIIRVANKRIPIIAGTGANSTREAIELTKAAKDLGADAALLVTP 105 (291)
T ss_dssp HHHHHHHHHTCCEEEESSTTTTGGGSCHHHHHHHHHHHHHHHTTSSCEEEECCCSSHHHHHHHHHHHHHHTCSEEEEECC
T ss_pred HHHHHHHHCCCCEEEECccccccccCCHHHHHHHHHHHHHHhCCCCeEEEeCCCCCHHHHHHHHHHHHhcCCCEEEEcCC
Confidence 44566677888887654 1221 12 23333322 2478887765 3 34566788999999998765
Q ss_pred CCCcccCCCCchhhhHHHHHHHhCCCCCcEEee-----cCc-CCHHHHHHHHHcCcceeeeccccccCccCCCCHHHHHH
Q 020013 140 EAGGHVIGQDGLISLLPMVVDLIGDRDIPIIAA-----GGI-VDARGYVAALSLGAQGICLGTRFVASEESYAHPEYKRK 213 (332)
Q Consensus 140 eaGGh~~~~~~~~~ll~~i~~~~~~~~iPviaa-----GGI-~~~~~v~~al~~GA~gV~~GT~fl~t~Es~~~~~~k~~ 213 (332)
-.-.. .+........++.++. ++||+.= .|+ -+++.+.+.... -.+..-+|+..+-..-..
T Consensus 106 ~y~~~--~~~~l~~~f~~ia~a~---~lPiilYn~P~~tg~~l~~~~~~~La~~--------pnivgiK~ssgd~~~~~~ 172 (291)
T 3tak_A 106 YYNKP--TQEGLYQHYKAIAEAV---ELPLILYNVPGRTGVDLSNDTAVRLAEI--------PNIVGIKDATGDVPRGKA 172 (291)
T ss_dssp CSSCC--CHHHHHHHHHHHHHHC---CSCEEEEECHHHHSCCCCHHHHHHHTTS--------TTEEEEEECSCCHHHHHH
T ss_pred CCCCC--CHHHHHHHHHHHHHhc---CCCEEEEecccccCCCCCHHHHHHHHcC--------CCEEEEEeCCCCHHHHHH
Confidence 32211 2234567777888876 7888753 233 256665554321 134455676655444344
Q ss_pred Hhc
Q 020013 214 LVE 216 (332)
Q Consensus 214 ~~~ 216 (332)
+.+
T Consensus 173 ~~~ 175 (291)
T 3tak_A 173 LID 175 (291)
T ss_dssp HHH
T ss_pred HHH
Confidence 444
|
| >1ujp_A Tryptophan synthase alpha chain; riken structural genomics/P initiative, RSGI, structural genomics, lyase; HET: CIT; 1.34A {Thermus thermophilus} SCOP: c.1.2.4 PDB: 1wxj_A* | Back alignment and structure |
|---|
Probab=87.93 E-value=5.9 Score=35.02 Aligned_cols=120 Identities=18% Similarity=0.203 Sum_probs=73.6
Q ss_pred CccceecCCCCCC-----CCcHHHHHHHHhCCCceeecCCCCCCHHHHHHHHHHHHhhcCCcEEEEeecCCCCHHHHHHH
Q 020013 9 FEYGIVQAPLGPD-----ISGPELVAAVANAGGLGLLRAPDWEAPDYLRDLIRKTRSLTERPFGVGVVLAFPHNENIKAI 83 (332)
Q Consensus 9 ~~~Pii~apM~~g-----~s~~~la~avs~aGglG~i~~~~~~~~e~~~~~i~~~r~~~~~p~gvnl~~~~~~~~~~~~~ 83 (332)
.+.||+. |... .....++..+.++|.=|++.. . .++++..+.++.+++. +.. .+-++.+....+.++.+
T Consensus 90 ~~~Pii~--m~y~n~v~~~g~~~f~~~~~~aG~dGviv~-D-l~~ee~~~~~~~~~~~-gl~-~i~liap~s~~eri~~i 163 (271)
T 1ujp_A 90 TEKPLFL--MTYLNPVLAWGPERFFGLFKQAGATGVILP-D-LPPDEDPGLVRLAQEI-GLE-TVFLLAPTSTDARIATV 163 (271)
T ss_dssp CCSCEEE--ECCHHHHHHHCHHHHHHHHHHHTCCEEECT-T-CCGGGCHHHHHHHHHH-TCE-EECEECTTCCHHHHHHH
T ss_pred CCCCEEE--EecCcHHHHhhHHHHHHHHHHcCCCEEEec-C-CCHHHHHHHHHHHHHc-CCc-eEEEeCCCCCHHHHHHH
Confidence 3568884 5310 022467777888898889875 3 3556667777777654 221 22233333335666666
Q ss_pred HhcCCcEEEEc--c---C------CCcHHHHHHHHhC-CCEEEE--ecCCHHHHHHHHHcCCCEEEE
Q 020013 84 LSEKVAVLQVS--W---G------EYSEELVLEAHSA-GVKVVP--QVGSFDEARKAVNAGVDAIIV 136 (332)
Q Consensus 84 ~~~~~~~I~~~--~---g------~~~~~~i~~~~~~-g~~v~~--~v~s~~~a~~a~~~g~D~ivv 136 (332)
.+....++... . | .+..++++++++. +++++. .+++++++.++ .++|++||
T Consensus 164 a~~~~gfiy~vs~~G~TG~~~~~~~~~~~~v~~vr~~~~~Pv~vGfGI~t~e~a~~~--~~ADgVIV 228 (271)
T 1ujp_A 164 VRHATGFVYAVSVTGVTGMRERLPEEVKDLVRRIKARTALPVAVGFGVSGKATAAQA--AVADGVVV 228 (271)
T ss_dssp HTTCCSCEEEECC------------CCHHHHHHHHTTCCSCEEEESCCCSHHHHHHH--TTSSEEEE
T ss_pred HHhCCCCEEEEecCcccCCCCCCCccHHHHHHHHHhhcCCCEEEEcCCCCHHHHHHh--cCCCEEEE
Confidence 66555544221 0 1 1234678888875 567764 47789999996 89999999
|
| >1a04_A Nitrate/nitrite response regulator protein NARL; signal transduction protein, response regulators, two- component systems; 2.20A {Escherichia coli} SCOP: a.4.6.2 c.23.1.1 PDB: 1rnl_A | Back alignment and structure |
|---|
Probab=87.91 E-value=4 Score=33.79 Aligned_cols=77 Identities=18% Similarity=0.137 Sum_probs=56.0
Q ss_pred CCEEEEecCCHHHHHHHH-HcCCCEEEEecCCCCcccCCCCchhhhHHHHHHHhCCCCCcEEeecCcCCHHHHHHHHHcC
Q 020013 110 GVKVVPQVGSFDEARKAV-NAGVDAIIVQGREAGGHVIGQDGLISLLPMVVDLIGDRDIPIIAAGGIVDARGYVAALSLG 188 (332)
Q Consensus 110 g~~v~~~v~s~~~a~~a~-~~g~D~ivv~G~eaGGh~~~~~~~~~ll~~i~~~~~~~~iPviaaGGI~~~~~v~~al~~G 188 (332)
+..++..+.+.+++.... ...+|.|+++-.-.+ ...+.++..+++... ++||+.-.+-.+.+.+..++.+|
T Consensus 30 ~~~vv~~~~~~~~al~~~~~~~~dlvllD~~lp~------~~g~~~~~~lr~~~~--~~~ii~ls~~~~~~~~~~~~~~G 101 (215)
T 1a04_A 30 DITVVGEASNGEQGIELAESLDPDLILLDLNMPG------MNGLETLDKLREKSL--SGRIVVFSVSNHEEDVVTALKRG 101 (215)
T ss_dssp TEEEEEEESSHHHHHHHHHHHCCSEEEEETTSTT------SCHHHHHHHHHHSCC--CSEEEEEECCCCHHHHHHHHHTT
T ss_pred CcEEEEEeCCHHHHHHHHHhcCCCEEEEeCCCCC------CcHHHHHHHHHHhCC--CCcEEEEECCCCHHHHHHHHHcC
Confidence 366667788888877654 457999998533111 133677788776532 68998888888899999999999
Q ss_pred cceeee
Q 020013 189 AQGICL 194 (332)
Q Consensus 189 A~gV~~ 194 (332)
|+++..
T Consensus 102 a~~~l~ 107 (215)
T 1a04_A 102 ADGYLL 107 (215)
T ss_dssp CSEEEE
T ss_pred CcEEEe
Confidence 998764
|
| >2nwr_A 2-dehydro-3-deoxyphosphooctonate aldolase; KDO, KDO8P, KDO8PS, PEP, A5P, transferase; HET: PEP; 1.50A {Aquifex aeolicus} PDB: 2nws_A* 2nx1_A* 3e0i_A* 1fwn_A* 1fwt_A* 1fws_A* 1fx6_A 1fww_A 1fxq_A* 1fy6_A* 1jcx_A* 1jcy_A* 1pck_A* 1pcw_A* 1fxp_A* 2a21_A* 2a2i_A* 1pe1_A* 3e12_A* 2nx3_A* ... | Back alignment and structure |
|---|
Probab=87.88 E-value=14 Score=32.61 Aligned_cols=174 Identities=17% Similarity=0.224 Sum_probs=95.0
Q ss_pred cceecCCCCCCCCcHHHHHHHHh----CC----CceeecC------CC-----CC--CHHHHHHHHHHHHhhcCCcEEEE
Q 020013 11 YGIVQAPLGPDISGPELVAAVAN----AG----GLGLLRA------PD-----WE--APDYLRDLIRKTRSLTERPFGVG 69 (332)
Q Consensus 11 ~Pii~apM~~g~s~~~la~avs~----aG----glG~i~~------~~-----~~--~~e~~~~~i~~~r~~~~~p~gvn 69 (332)
.-+|.||-+ +.+++.+...++ .+ +++++.- ++ +. ..+.=.+++.++++..+.|+..-
T Consensus 4 l~viaGPCs--ie~~~~~~~~A~~l~~~~~~~~~~~~v~k~~f~KapRTs~~sf~G~g~~~GL~~l~~~~~e~Glp~~te 81 (267)
T 2nwr_A 4 FLVIAGPNA--IESEELLLKVGEEIKRLSEKFKEVEFVFKSSFDKANRSSIHSFRGHGLEYGVKALRKVKEEFGLKITTD 81 (267)
T ss_dssp EEEEEECSB--CSCHHHHHHHHHHHHHHHHHCTTEEEEEECBSCCTTCSSTTSCCCSCHHHHHHHHHHHHHHHCCEEEEE
T ss_pred cEEEEcCCC--cCCHHHHHHHHHHHHHHHHhhcCccEEEeeccccCCCCCCCCCcCccHHHHHHHHHHHHHhcCCeEEEe
Confidence 347788875 777776655543 22 3555432 11 11 11222233444544456666665
Q ss_pred eecCCCCHHHHHHHHhcCCcEEEEcc-CCCcHHHHHHHHhCCCEEEEecC---CHHHHHHHH----HcCC-CEEEEe-cC
Q 020013 70 VVLAFPHNENIKAILSEKVAVLQVSW-GEYSEELVLEAHSAGVKVVPQVG---SFDEARKAV----NAGV-DAIIVQ-GR 139 (332)
Q Consensus 70 l~~~~~~~~~~~~~~~~~~~~I~~~~-g~~~~~~i~~~~~~g~~v~~~v~---s~~~a~~a~----~~g~-D~ivv~-G~ 139 (332)
++- ...++.+.+ .+|+++++. +....++.+.+-..+.+|+.+-+ ++++...+. ..|- |.+++. |.
T Consensus 82 ~~d----~~~~~~l~~-~vd~~~IgA~~~rn~~ll~~~a~~~~PV~lK~G~~~t~~e~~~Av~~i~~~GN~~i~L~~rG~ 156 (267)
T 2nwr_A 82 IHE----SWQAEPVAE-VADIIQIPAFLCRQTDLLLAAAKTGRAVNVKKGQFLAPWDTKNVVEKLKFGGAKEIYLTERGT 156 (267)
T ss_dssp CSS----GGGHHHHHT-TCSEEEECGGGTTCHHHHHHHHTTTSEEEEECCTTCCGGGGHHHHHHHHHTTCSSEEEEECCE
T ss_pred cCC----HHhHHHHHh-cCCEEEECcccccCHHHHHHHHcCCCcEEEeCCCCCCHHHHHHHHHHHHHcCCCeEEEEECCC
Confidence 442 456666666 699999974 22334577777777899886643 556555443 4564 666663 22
Q ss_pred CCCcccCCCCchhhhHHHHHHHhCCCCCcEEee---------------cCcCC--HHHHHHHHHcCcceeeecccc
Q 020013 140 EAGGHVIGQDGLISLLPMVVDLIGDRDIPIIAA---------------GGIVD--ARGYVAALSLGAQGICLGTRF 198 (332)
Q Consensus 140 eaGGh~~~~~~~~~ll~~i~~~~~~~~iPviaa---------------GGI~~--~~~v~~al~~GA~gV~~GT~f 198 (332)
.. +.. .....+..++.+++. + ||+.. +|-.. ..-..++.++||+|+++=+-|
T Consensus 157 ~~-~y~-~~~~dl~~i~~lk~~----~-pVivD~sH~~q~p~G~s~hs~g~~~~~~~ia~aava~Ga~G~mIE~H~ 225 (267)
T 2nwr_A 157 TF-GYN-NLVVDFRSLPIMKQW----A-KVIYDATHSVQLPGGLGDKSGGMREFIFPLIRAAVAVGCDGVFMETHP 225 (267)
T ss_dssp EC-SSS-CEECCTTHHHHHTTT----S-EEEEETTGGGCCTTC------CCGGGHHHHHHHHHHHCCSEEEEEEES
T ss_pred CC-CCC-ccccCHHHHHHHHHc----C-CEEEcCCcccccCCCcCcCCCCchhHHHHHHHHHHHcCCCEEEEEecC
Confidence 11 110 001235556665442 5 99885 34110 122446778999999985554
|
| >3cpr_A Dihydrodipicolinate synthetase; (beta/alpha)8-barrel fold with A C-terminal alpha-helical segment, amino-acid biosynthesis, cytoplasm; HET: MCL; 2.20A {Corynebacterium glutamicum} | Back alignment and structure |
|---|
Probab=87.84 E-value=3.8 Score=36.87 Aligned_cols=125 Identities=20% Similarity=0.301 Sum_probs=72.2
Q ss_pred HHHHHHHhcCCcEEEEc--cCCC----cH---HHHHHHHh---CCCEEEEecCC------HHHHHHHHHcCCCEEEEecC
Q 020013 78 ENIKAILSEKVAVLQVS--WGEY----SE---ELVLEAHS---AGVKVVPQVGS------FDEARKAVNAGVDAIIVQGR 139 (332)
Q Consensus 78 ~~~~~~~~~~~~~I~~~--~g~~----~~---~~i~~~~~---~g~~v~~~v~s------~~~a~~a~~~g~D~ivv~G~ 139 (332)
..++.+++.|++.+.+. .|.. .+ ++++...+ ..++|+..+++ ++.++.+.+.|+|++.+..+
T Consensus 41 ~lv~~li~~Gv~gl~v~GttGE~~~Ls~~Er~~v~~~~~~~~~grvpviaGvg~~st~~ai~la~~A~~~Gadavlv~~P 120 (304)
T 3cpr_A 41 EVAAYLVDKGLDSLVLAGTTGESPTTTAAEKLELLKAVREEVGDRAKLIAGVGTNNTRTSVELAEAAASAGADGLLVVTP 120 (304)
T ss_dssp HHHHHHHHTTCCEEEESSTTTTTTTSCHHHHHHHHHHHHHHHTTTSEEEEECCCSCHHHHHHHHHHHHHTTCSEEEEECC
T ss_pred HHHHHHHHcCCCEEEECccccChhhCCHHHHHHHHHHHHHHhCCCCcEEecCCCCCHHHHHHHHHHHHhcCCCEEEECCC
Confidence 45666777889888764 1221 11 23333332 24888877763 44566788999999998665
Q ss_pred CCCcccCCCCchhhhHHHHHHHhCCCCCcEEee-----cCc-CCHHHHHHHHHcCcceeeeccccccCccCCCCHHHHHH
Q 020013 140 EAGGHVIGQDGLISLLPMVVDLIGDRDIPIIAA-----GGI-VDARGYVAALSLGAQGICLGTRFVASEESYAHPEYKRK 213 (332)
Q Consensus 140 eaGGh~~~~~~~~~ll~~i~~~~~~~~iPviaa-----GGI-~~~~~v~~al~~GA~gV~~GT~fl~t~Es~~~~~~k~~ 213 (332)
-.-. ..+........++.++. ++||+.= -|+ -+++.+.+..+. -.+..-+|+..+-.+-..
T Consensus 121 ~y~~--~~~~~l~~~f~~ia~a~---~lPiilYn~P~~tg~~l~~~~~~~La~~--------pnIvgiKdssgd~~~~~~ 187 (304)
T 3cpr_A 121 YYSK--PSQEGLLAHFGAIAAAT---EVPICLYDIPGRSGIPIESDTMRRLSEL--------PTILAVXDAKGDLVAATS 187 (304)
T ss_dssp CSSC--CCHHHHHHHHHHHHHHC---CSCEEEEECHHHHSSCCCHHHHHHHTTS--------TTEEEEEECSCCHHHHHH
T ss_pred CCCC--CCHHHHHHHHHHHHHhc---CCCEEEEeCccccCcCCCHHHHHHHHcC--------CCEEEEecCCCCHHHHHH
Confidence 3211 12234566777888776 6888762 243 266766665322 235556677655443333
Q ss_pred Hh
Q 020013 214 LV 215 (332)
Q Consensus 214 ~~ 215 (332)
+.
T Consensus 188 ~~ 189 (304)
T 3cpr_A 188 LI 189 (304)
T ss_dssp HH
T ss_pred HH
Confidence 33
|
| >1vli_A Spore coat polysaccharide biosynthesis protein SP; 2636322, JCSG, protein structure initiative, BS SPSE, PSI; 2.38A {Bacillus subtilis} SCOP: b.85.1.1 c.1.10.6 | Back alignment and structure |
|---|
Probab=87.79 E-value=2.1 Score=39.90 Aligned_cols=89 Identities=16% Similarity=0.098 Sum_probs=66.3
Q ss_pred HHHHHHHhCCCEEEEecCCHHHHHHHHHcCCCEEEEecCCCCcccCCCCchhhhHHHHHHHhCCCCCcEEeecCcCCHHH
Q 020013 101 ELVLEAHSAGVKVVPQVGSFDEARKAVNAGVDAIIVQGREAGGHVIGQDGLISLLPMVVDLIGDRDIPIIAAGGIVDARG 180 (332)
Q Consensus 101 ~~i~~~~~~g~~v~~~v~s~~~a~~a~~~g~D~ivv~G~eaGGh~~~~~~~~~ll~~i~~~~~~~~iPviaaGGI~~~~~ 180 (332)
.+.+.+++.|+.++..+-+.+.+..+.+.++|++-+-- +....+.||..+.+. +.|||..=|.+|-+.
T Consensus 105 ~L~~~~~~~Gi~~~stpfD~~svd~l~~~~vd~~KIgS--------~~~~N~pLL~~va~~----gKPViLStGmaTl~E 172 (385)
T 1vli_A 105 PLLDYCREKQVIFLSTVCDEGSADLLQSTSPSAFKIAS--------YEINHLPLLKYVARL----NRPMIFSTAGAEISD 172 (385)
T ss_dssp HHHHHHHHTTCEEECBCCSHHHHHHHHTTCCSCEEECG--------GGTTCHHHHHHHHTT----CSCEEEECTTCCHHH
T ss_pred HHHHHHHHcCCcEEEccCCHHHHHHHHhcCCCEEEECc--------ccccCHHHHHHHHhc----CCeEEEECCCCCHHH
Confidence 45566778899999999999999888899999998821 123447788877653 789999999999999
Q ss_pred HHHHHH----cCcceeee--ccccccC
Q 020013 181 YVAALS----LGAQGICL--GTRFVAS 201 (332)
Q Consensus 181 v~~al~----~GA~gV~~--GT~fl~t 201 (332)
+..+.. .|..-|.+ +++-.-+
T Consensus 173 i~~Ave~i~~~Gn~~iiLlhc~s~YPt 199 (385)
T 1vli_A 173 VHEAWRTIRAEGNNQIAIMHCVAKYPA 199 (385)
T ss_dssp HHHHHHHHHTTTCCCEEEEEECSSSSC
T ss_pred HHHHHHHHHHCCCCcEEEEeccCCCCC
Confidence 877664 57654554 4444433
|
| >3fkr_A L-2-keto-3-deoxyarabonate dehydratase; DHDPS/NAL family, complex, pyruvate, lyase; HET: KPI; 1.80A {Azospirillum brasilense} PDB: 3fkk_A | Back alignment and structure |
|---|
Probab=87.78 E-value=1.8 Score=39.16 Aligned_cols=105 Identities=16% Similarity=0.211 Sum_probs=60.6
Q ss_pred HHHHHHHhcCCcEEEEc--cCCC----cH---HHHHHHHh---CCCEEEEecC--C----HHHHHHHHHcCCCEEEEecC
Q 020013 78 ENIKAILSEKVAVLQVS--WGEY----SE---ELVLEAHS---AGVKVVPQVG--S----FDEARKAVNAGVDAIIVQGR 139 (332)
Q Consensus 78 ~~~~~~~~~~~~~I~~~--~g~~----~~---~~i~~~~~---~g~~v~~~v~--s----~~~a~~a~~~g~D~ivv~G~ 139 (332)
..++..++.|++.+.+. -|.. .+ ++++...+ ..++|+..++ + ++.++.+.+.|+|++.+..+
T Consensus 33 ~lv~~li~~Gv~gl~v~GtTGE~~~Ls~~Er~~v~~~~~~~~~grvpviaGvg~~~t~~ai~la~~A~~~Gadavlv~~P 112 (309)
T 3fkr_A 33 RAVDFMIDAGSDGLCILANFSEQFAITDDERDVLTRTILEHVAGRVPVIVTTSHYSTQVCAARSLRAQQLGAAMVMAMPP 112 (309)
T ss_dssp HHHHHHHHTTCSCEEESSGGGTGGGSCHHHHHHHHHHHHHHHTTSSCEEEECCCSSHHHHHHHHHHHHHTTCSEEEECCS
T ss_pred HHHHHHHHcCCCEEEECccccCcccCCHHHHHHHHHHHHHHhCCCCcEEEecCCchHHHHHHHHHHHHHcCCCEEEEcCC
Confidence 44566677888877664 1221 11 23333332 2478887765 3 34566788999999999665
Q ss_pred CCCc-ccCCCCchhhhHHHHHHHhCCCCCcEEee----cCc-CCHHHHHHHH
Q 020013 140 EAGG-HVIGQDGLISLLPMVVDLIGDRDIPIIAA----GGI-VDARGYVAAL 185 (332)
Q Consensus 140 eaGG-h~~~~~~~~~ll~~i~~~~~~~~iPviaa----GGI-~~~~~v~~al 185 (332)
-.+. ....+.........+.++. ++||+.= -|+ -+++.+.+..
T Consensus 113 yy~~~~~~s~~~l~~~f~~va~a~---~lPiilYn~P~tg~~l~~~~~~~La 161 (309)
T 3fkr_A 113 YHGATFRVPEAQIFEFYARVSDAI---AIPIMVQDAPASGTALSAPFLARMA 161 (309)
T ss_dssp CBTTTBCCCHHHHHHHHHHHHHHC---SSCEEEEECGGGCCCCCHHHHHHHH
T ss_pred CCccCCCCCHHHHHHHHHHHHHhc---CCCEEEEeCCCCCCCCCHHHHHHHH
Confidence 3321 1112335567777888876 5776642 232 2566666655
|
| >3qze_A DHDPS, dihydrodipicolinate synthase; alpha beta barrel, cytoplasmic; 1.59A {Pseudomonas aeruginosa} PDB: 3puo_A* 3noe_A 3ps7_A* 3s8h_A | Back alignment and structure |
|---|
Probab=87.77 E-value=2.3 Score=38.59 Aligned_cols=127 Identities=15% Similarity=0.182 Sum_probs=73.8
Q ss_pred HHHHHHHhcCCcEEEEc--cCCC----cH---HHHHHHHh---CCCEEEEecC--C----HHHHHHHHHcCCCEEEEecC
Q 020013 78 ENIKAILSEKVAVLQVS--WGEY----SE---ELVLEAHS---AGVKVVPQVG--S----FDEARKAVNAGVDAIIVQGR 139 (332)
Q Consensus 78 ~~~~~~~~~~~~~I~~~--~g~~----~~---~~i~~~~~---~g~~v~~~v~--s----~~~a~~a~~~g~D~ivv~G~ 139 (332)
..++.+++.|++.+.+. .|.. .+ ++++...+ ..++|+..++ + ++.++.+.+.|+|++.+..+
T Consensus 48 ~lv~~li~~Gv~Gl~v~GtTGE~~~Ls~~Er~~v~~~~v~~~~grvpViaGvg~~st~eai~la~~A~~~Gadavlv~~P 127 (314)
T 3qze_A 48 KLVDFHLQEGTNAIVAVGTTGESATLDVEEHIQVIRRVVDQVKGRIPVIAGTGANSTREAVALTEAAKSGGADACLLVTP 127 (314)
T ss_dssp HHHHHHHHHTCCEEEESSGGGTGGGCCHHHHHHHHHHHHHHHTTSSCEEEECCCSSHHHHHHHHHHHHHTTCSEEEEECC
T ss_pred HHHHHHHHcCCCEEEECccccChhhCCHHHHHHHHHHHHHHhCCCCcEEEeCCCcCHHHHHHHHHHHHHcCCCEEEEcCC
Confidence 45666778899988764 1221 12 23333322 2478887775 3 34556788999999998765
Q ss_pred CCCcccCCCCchhhhHHHHHHHhCCCCCcEEee------cCcCCHHHHHHHHHcCcceeeeccccccCccCCCCHHHHHH
Q 020013 140 EAGGHVIGQDGLISLLPMVVDLIGDRDIPIIAA------GGIVDARGYVAALSLGAQGICLGTRFVASEESYAHPEYKRK 213 (332)
Q Consensus 140 eaGGh~~~~~~~~~ll~~i~~~~~~~~iPviaa------GGI~~~~~v~~al~~GA~gV~~GT~fl~t~Es~~~~~~k~~ 213 (332)
-.-. ..+........++.++. ++||+.= |---+++.+.+..+. -.+..-+|+..+-.+-..
T Consensus 128 ~y~~--~s~~~l~~~f~~va~a~---~lPiilYn~P~~tg~~l~~~~~~~La~~--------pnIvgiKdssgd~~~~~~ 194 (314)
T 3qze_A 128 YYNK--PTQEGMYQHFRHIAEAV---AIPQILYNVPGRTSCDMLPETVERLSKV--------PNIIGIKEATGDLQRAKE 194 (314)
T ss_dssp CSSC--CCHHHHHHHHHHHHHHS---CSCEEEEECHHHHSCCCCHHHHHHHHTS--------TTEEEEEECSCCHHHHHH
T ss_pred CCCC--CCHHHHHHHHHHHHHhc---CCCEEEEeCccccCCCCCHHHHHHHhcC--------CCEEEEEcCCCCHHHHHH
Confidence 3221 12234567777888877 7888763 322266666665432 134455677655444444
Q ss_pred HhcC
Q 020013 214 LVEM 217 (332)
Q Consensus 214 ~~~~ 217 (332)
+++.
T Consensus 195 ~~~~ 198 (314)
T 3qze_A 195 VIER 198 (314)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 4443
|
| >3h5i_A Response regulator/sensory box protein/ggdef domain protein; structural genomics, transcription, PSI-2; 1.90A {Carboxydothermus hydrogenoformans z-2901} | Back alignment and structure |
|---|
Probab=87.76 E-value=1.9 Score=33.05 Aligned_cols=83 Identities=13% Similarity=0.061 Sum_probs=58.0
Q ss_pred HHHHHhCCCEEEEecCCHHHHHHHHH--cCCCEEEEecCCCCcccCCCCchhhhHHHHHHHhCCCCCcEEeecCcCCHHH
Q 020013 103 VLEAHSAGVKVVPQVGSFDEARKAVN--AGVDAIIVQGREAGGHVIGQDGLISLLPMVVDLIGDRDIPIIAAGGIVDARG 180 (332)
Q Consensus 103 i~~~~~~g~~v~~~v~s~~~a~~a~~--~g~D~ivv~G~eaGGh~~~~~~~~~ll~~i~~~~~~~~iPviaaGGI~~~~~ 180 (332)
.+.+.+.|..+. .+.+.+++..... ..+|.|++.-.-..| ...+.++..+++. + ++|||+-.+-.+.+.
T Consensus 22 ~~~L~~~g~~v~-~~~~~~~a~~~l~~~~~~dlvi~D~~l~~~-----~~g~~~~~~l~~~-~--~~~ii~ls~~~~~~~ 92 (140)
T 3h5i_A 22 ANILNKYGYTVE-IALTGEAAVEKVSGGWYPDLILMDIELGEG-----MDGVQTALAIQQI-S--ELPVVFLTAHTEPAV 92 (140)
T ss_dssp HHHHHHTTCEEE-EESSHHHHHHHHHTTCCCSEEEEESSCSSS-----CCHHHHHHHHHHH-C--CCCEEEEESSSSCCC
T ss_pred HHHHHHcCCEEE-EecChHHHHHHHhcCCCCCEEEEeccCCCC-----CCHHHHHHHHHhC-C--CCCEEEEECCCCHHH
Confidence 344566787766 5778888877664 468999986432111 2336777777765 2 789998888878788
Q ss_pred HHHHHHcCcceeee
Q 020013 181 YVAALSLGAQGICL 194 (332)
Q Consensus 181 v~~al~~GA~gV~~ 194 (332)
+.+++.+||+++..
T Consensus 93 ~~~~~~~g~~~~l~ 106 (140)
T 3h5i_A 93 VEKIRSVTAYGYVM 106 (140)
T ss_dssp CGGGGGSCEEEEEE
T ss_pred HHHHHhCCCcEEEe
Confidence 88889999988653
|
| >1f6k_A N-acetylneuraminate lyase; beta barrel; 1.60A {Haemophilus influenzae} SCOP: c.1.10.1 PDB: 1f5z_A 1f6p_A 1f73_A* 1f74_A* 1f7b_A* | Back alignment and structure |
|---|
Probab=87.71 E-value=3.5 Score=36.89 Aligned_cols=126 Identities=16% Similarity=0.152 Sum_probs=73.0
Q ss_pred HHHHHHHh-cCCcEEEEc--cCCC----cH---HHHHHHHh---CCCEEEEecCC------HHHHHHHHHcCCCEEEEec
Q 020013 78 ENIKAILS-EKVAVLQVS--WGEY----SE---ELVLEAHS---AGVKVVPQVGS------FDEARKAVNAGVDAIIVQG 138 (332)
Q Consensus 78 ~~~~~~~~-~~~~~I~~~--~g~~----~~---~~i~~~~~---~g~~v~~~v~s------~~~a~~a~~~g~D~ivv~G 138 (332)
..++.+++ .|++.+.+. .|.. .+ ++++...+ ..++|+..+++ ++.++.+.+.|+|++.+..
T Consensus 28 ~lv~~li~~~Gv~gl~~~GttGE~~~Ls~~Er~~v~~~~~~~~~grvpviaGvg~~~t~~ai~la~~a~~~Gadavlv~~ 107 (293)
T 1f6k_A 28 QIIRHNIDKMKVDGLYVGGSTGENFMLSTEEKKEIFRIAKDEAKDQIALIAQVGSVNLKEAVELGKYATELGYDCLSAVT 107 (293)
T ss_dssp HHHHHHHHTSCCSEEEESSGGGTGGGSCHHHHHHHHHHHHHHHTTSSEEEEECCCSCHHHHHHHHHHHHHHTCSEEEEEC
T ss_pred HHHHHHHhhCCCcEEEeCccccchhhCCHHHHHHHHHHHHHHhCCCCeEEEecCCCCHHHHHHHHHHHHhcCCCEEEECC
Confidence 45666777 888887764 1221 11 23333332 35888877763 4456678889999999866
Q ss_pred CCCCcccCCCCchhhhHHHHHHHhCCCCCcEEe-----ecCc-CCHHHHHHHHHcCcceeeeccccccCccCCCCHHHHH
Q 020013 139 REAGGHVIGQDGLISLLPMVVDLIGDRDIPIIA-----AGGI-VDARGYVAALSLGAQGICLGTRFVASEESYAHPEYKR 212 (332)
Q Consensus 139 ~eaGGh~~~~~~~~~ll~~i~~~~~~~~iPvia-----aGGI-~~~~~v~~al~~GA~gV~~GT~fl~t~Es~~~~~~k~ 212 (332)
+..-.. .+........++.++. ++||+. ..|+ -+++.+.+..+. -.+..-+|+..+-..-+
T Consensus 108 P~y~~~--~~~~l~~~f~~va~a~---~lPiilYn~P~~tg~~l~~~~~~~La~~--------pnIvgiK~s~gd~~~~~ 174 (293)
T 1f6k_A 108 PFYYKF--SFPEIKHYYDTIIAET---GSNMIVYSIPFLTGVNMGIEQFGELYKN--------PKVLGVKFTAGDFYLLE 174 (293)
T ss_dssp CCSSCC--CHHHHHHHHHHHHHHH---CCCEEEEECHHHHCCCCCHHHHHHHHTS--------TTEEEEEECSCCHHHHH
T ss_pred CCCCCC--CHHHHHHHHHHHHHhC---CCCEEEEECccccCcCCCHHHHHHHhcC--------CCEEEEEECCCCHHHHH
Confidence 532111 2234566777888877 688776 2343 267777665432 23445566665544433
Q ss_pred HHhc
Q 020013 213 KLVE 216 (332)
Q Consensus 213 ~~~~ 216 (332)
.+.+
T Consensus 175 ~~~~ 178 (293)
T 1f6k_A 175 RLKK 178 (293)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 4443
|
| >2qvg_A Two component response regulator; NYSGXRC, PSI-2, structural genomics, protein structure initiative; 1.50A {Legionella pneumophila subsp} | Back alignment and structure |
|---|
Probab=87.70 E-value=3.2 Score=31.59 Aligned_cols=85 Identities=15% Similarity=0.053 Sum_probs=57.0
Q ss_pred HHHHhCCC-EEEEecCCHHHHHHHHH-------cCCCEEEEecCCCCcccCCCCchhhhHHHHHHHhCCCCCcEEeecCc
Q 020013 104 LEAHSAGV-KVVPQVGSFDEARKAVN-------AGVDAIIVQGREAGGHVIGQDGLISLLPMVVDLIGDRDIPIIAAGGI 175 (332)
Q Consensus 104 ~~~~~~g~-~v~~~v~s~~~a~~a~~-------~g~D~ivv~G~eaGGh~~~~~~~~~ll~~i~~~~~~~~iPviaaGGI 175 (332)
+.++..|. ..+..+.+.+++..... ..+|.|++.-.-. ....+.++..+++.....++|+|+-.+-
T Consensus 25 ~~L~~~g~~~~v~~~~~~~~a~~~l~~~~~~~~~~~dlii~D~~l~------~~~g~~~~~~l~~~~~~~~~~ii~ls~~ 98 (143)
T 2qvg_A 25 RVFHKISSLIKIEIAKSGNQALDMLYGRNKENKIHPKLILLDINIP------KMNGIEFLKELRDDSSFTDIEVFVLTAA 98 (143)
T ss_dssp HHHHHHCTTCCEEEESSHHHHHHHHHTCTTCCCCCCSEEEEETTCT------TSCHHHHHHHHTTSGGGTTCEEEEEESC
T ss_pred HHHHHhCCCceEEEECCHHHHHHHHHhcccccCCCCCEEEEecCCC------CCCHHHHHHHHHcCccccCCcEEEEeCC
Confidence 34455555 23446778888887765 4699999853211 1233667777765421126899988888
Q ss_pred CCHHHHHHHHHcCcceeee
Q 020013 176 VDARGYVAALSLGAQGICL 194 (332)
Q Consensus 176 ~~~~~v~~al~~GA~gV~~ 194 (332)
.+.+....++.+|++++..
T Consensus 99 ~~~~~~~~~~~~g~~~~l~ 117 (143)
T 2qvg_A 99 YTSKDKLAFESLNIRGHLI 117 (143)
T ss_dssp CCHHHHHHHTTTTCCEEEE
T ss_pred CCHHHHHHHHhcCCCeEEE
Confidence 7888999999999998764
|
| >2qzj_A Two-component response regulator; 11017X, PSI-II, structural genomics; 2.89A {Clostridium difficile} | Back alignment and structure |
|---|
Probab=87.66 E-value=4.9 Score=30.48 Aligned_cols=81 Identities=15% Similarity=0.134 Sum_probs=56.1
Q ss_pred HHHHhCCCEEEEecCCHHHHHHHH-HcCCCEEEEecCCCCcccCCCCchhhhHHHHHHHhCCCCCcEEeecCcCCHHHHH
Q 020013 104 LEAHSAGVKVVPQVGSFDEARKAV-NAGVDAIIVQGREAGGHVIGQDGLISLLPMVVDLIGDRDIPIIAAGGIVDARGYV 182 (332)
Q Consensus 104 ~~~~~~g~~v~~~v~s~~~a~~a~-~~g~D~ivv~G~eaGGh~~~~~~~~~ll~~i~~~~~~~~iPviaaGGI~~~~~v~ 182 (332)
..+...|..+. .+.+.+++.... ...+|.|++.-.- .....+.++..+++.. .+|||.-.+-.+.+.+.
T Consensus 22 ~~L~~~g~~v~-~~~~~~~al~~~~~~~~dlvllD~~l------~~~~g~~l~~~l~~~~---~~~ii~ls~~~~~~~~~ 91 (136)
T 2qzj_A 22 GFLEEKGISID-LAYNCEEAIGKIFSNKYDLIFLEIIL------SDGDGWTLCKKIRNVT---TCPIVYMTYINEDQSIL 91 (136)
T ss_dssp HHHHTTTCEEE-EESSHHHHHHHHHHCCCSEEEEESEE------TTEEHHHHHHHHHTTC---CCCEEEEESCCCHHHHH
T ss_pred HHHHHCCCEEE-EECCHHHHHHHHHhcCCCEEEEeCCC------CCCCHHHHHHHHccCC---CCCEEEEEcCCCHHHHH
Confidence 34455677654 677877776654 4568999884221 1112366777777543 68999888887888999
Q ss_pred HHHHcCcceeee
Q 020013 183 AALSLGAQGICL 194 (332)
Q Consensus 183 ~al~~GA~gV~~ 194 (332)
.++..||+++..
T Consensus 92 ~~~~~ga~~~l~ 103 (136)
T 2qzj_A 92 NALNSGGDDYLI 103 (136)
T ss_dssp HHHHTTCCEEEE
T ss_pred HHHHcCCcEEEE
Confidence 999999998764
|
| >3kyj_B CHEY6 protein, putative histidine protein kinase; protein-protein interaction, histidine kinase, response regulator, phosphorylation; 1.40A {Rhodobacter sphaeroides} PDB: 3kyi_B* | Back alignment and structure |
|---|
Probab=87.57 E-value=1.9 Score=33.13 Aligned_cols=80 Identities=20% Similarity=0.150 Sum_probs=51.6
Q ss_pred HHhC-CCEEEEecCCHHHHHHHH-Hc-CCCEEEEecCCCCcccCCCCchhhhHHHHHHHhCCCCCcEEeecC--cCCHHH
Q 020013 106 AHSA-GVKVVPQVGSFDEARKAV-NA-GVDAIIVQGREAGGHVIGQDGLISLLPMVVDLIGDRDIPIIAAGG--IVDARG 180 (332)
Q Consensus 106 ~~~~-g~~v~~~v~s~~~a~~a~-~~-g~D~ivv~G~eaGGh~~~~~~~~~ll~~i~~~~~~~~iPviaaGG--I~~~~~ 180 (332)
+++. |..++..+.+.+++.... +. .+|.|++.=.-.+ ...+.++..+++.. ..|++.-.+ -.+.+.
T Consensus 33 L~~~~~~~~v~~~~~~~~al~~l~~~~~~dlvilD~~l~~------~~g~~~~~~lr~~~---~~~iiil~~~~~~~~~~ 103 (145)
T 3kyj_B 33 IKTLPDFKVVAQAANGQEALDKLAAQPNVDLILLDIEMPV------MDGMEFLRHAKLKT---RAKICMLSSVAVSGSPH 103 (145)
T ss_dssp HTTCTTEEEEEEESSHHHHHHHHHHCTTCCEEEECTTSCC------CTTCHHHHHHHHHC---CCEEC-CBSSCSTTSSH
T ss_pred HHhCCCceEEEEECCHHHHHHHHhcCCCCCEEEEeCCCCC------CCHHHHHHHHHhcC---CCCeEEEEEeccCChHH
Confidence 3444 677777888998887755 44 5999998532111 12256777777654 456555444 445667
Q ss_pred HHHHHHcCcceeee
Q 020013 181 YVAALSLGAQGICL 194 (332)
Q Consensus 181 v~~al~~GA~gV~~ 194 (332)
+.+++..||+++..
T Consensus 104 ~~~~~~~ga~~~l~ 117 (145)
T 3kyj_B 104 AARARELGADGVVA 117 (145)
T ss_dssp HHHHHHTTCSCCCB
T ss_pred HHHHHhCCCCEEEe
Confidence 78899999987753
|
| >3l12_A Putative glycerophosphoryl diester phosphodiester; struct genomics, joint center for structural genomics, JCSG, prote structure initiative; HET: MSE; 1.60A {Silicibacter pomeroyi} | Back alignment and structure |
|---|
Probab=87.51 E-value=1.6 Score=39.42 Aligned_cols=56 Identities=29% Similarity=0.405 Sum_probs=46.5
Q ss_pred HHHHhcCCcEEEEccCCCcHHHHHHHHhCCCEEEE-ecCCHHHHHHHHHcCCCEEEE
Q 020013 81 KAILSEKVAVLQVSWGEYSEELVLEAHSAGVKVVP-QVGSFDEARKAVNAGVDAIIV 136 (332)
Q Consensus 81 ~~~~~~~~~~I~~~~g~~~~~~i~~~~~~g~~v~~-~v~s~~~a~~a~~~g~D~ivv 136 (332)
+.+...+++++..++....+++++.+++.|++|.+ +|.+.++++.+.+.|+|+|+.
T Consensus 239 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~~Gl~V~~WTVn~~~~~~~l~~~GVDgIiT 295 (313)
T 3l12_A 239 QAVASAGGQLWCPYFLDVTPELVAEAHDLGLIVLTWTVNEPEDIRRMATTGVDGIVT 295 (313)
T ss_dssp HHHHHHTCSEEEEBGGGCCHHHHHHHHHTTCEEEEBCCCSHHHHHHHHHHTCSEEEE
T ss_pred HHHHHhCCcEEecchhcCCHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHcCCCEEEe
Confidence 34455678999887655567899999999999875 578899999999999999987
|
| >1p6q_A CHEY2; chemotaxis, signal transduction, response regulator, structural proteomics in europe, spine, structural genomics; NMR {Sinorhizobium meliloti} SCOP: c.23.1.1 PDB: 1p6u_A | Back alignment and structure |
|---|
Probab=87.48 E-value=4.1 Score=30.29 Aligned_cols=84 Identities=17% Similarity=0.096 Sum_probs=55.6
Q ss_pred HHHHhCCCEEEEecCCHHHHHHHHH-cCCCEEEEecCCCCcccCCCCchhhhHHHHHHHhCCCCCcEEeecCcCCHHHHH
Q 020013 104 LEAHSAGVKVVPQVGSFDEARKAVN-AGVDAIIVQGREAGGHVIGQDGLISLLPMVVDLIGDRDIPIIAAGGIVDARGYV 182 (332)
Q Consensus 104 ~~~~~~g~~v~~~v~s~~~a~~a~~-~g~D~ivv~G~eaGGh~~~~~~~~~ll~~i~~~~~~~~iPviaaGGI~~~~~v~ 182 (332)
..++..|...+..+.+.+++..... ..+|.|++.-.- .....+.++..+++.....++|++.-.+-.+.+.+.
T Consensus 24 ~~L~~~g~~~v~~~~~~~~a~~~~~~~~~dlvl~D~~l------~~~~g~~~~~~l~~~~~~~~~~ii~~s~~~~~~~~~ 97 (129)
T 1p6q_A 24 DALQQLGFKQITAAGDGEQGMKIMAQNPHHLVISDFNM------PKMDGLGLLQAVRANPATKKAAFIILTAQGDRALVQ 97 (129)
T ss_dssp HHHHTTTCSCEECCSSHHHHHHHHHTSCCSEEEECSSS------CSSCHHHHHHHHTTCTTSTTCEEEECCSCCCHHHHH
T ss_pred HHHHHCCCcEEEecCCHHHHHHHHHcCCCCEEEEeCCC------CCCCHHHHHHHHhcCccccCCCEEEEeCCCCHHHHH
Confidence 3445556645556778888776654 468999884221 111235677777653111268999888888888889
Q ss_pred HHHHcCcceee
Q 020013 183 AALSLGAQGIC 193 (332)
Q Consensus 183 ~al~~GA~gV~ 193 (332)
.++..|++++.
T Consensus 98 ~~~~~g~~~~l 108 (129)
T 1p6q_A 98 KAAALGANNVL 108 (129)
T ss_dssp HHHHHTCSCEE
T ss_pred HHHHcCCCEEE
Confidence 99999998765
|
| >1zh2_A KDP operon transcriptional regulatory protein KDPE; two-component system, gene regulation, transcription factor, KDP potassium transport system; 2.00A {Escherichia coli} SCOP: c.23.1.1 PDB: 1zh4_A | Back alignment and structure |
|---|
Probab=87.47 E-value=4.5 Score=29.54 Aligned_cols=81 Identities=16% Similarity=0.211 Sum_probs=53.9
Q ss_pred HHHHhCCCEEEEecCCHHHHHHH-HHcCCCEEEEecCCCCcccCCCCchhhhHHHHHHHhCCCCCcEEeecCcCCHHHHH
Q 020013 104 LEAHSAGVKVVPQVGSFDEARKA-VNAGVDAIIVQGREAGGHVIGQDGLISLLPMVVDLIGDRDIPIIAAGGIVDARGYV 182 (332)
Q Consensus 104 ~~~~~~g~~v~~~v~s~~~a~~a-~~~g~D~ivv~G~eaGGh~~~~~~~~~ll~~i~~~~~~~~iPviaaGGI~~~~~v~ 182 (332)
+.+...|..+. .+.+..++... ....+|.+++.-.-. ....+.++..+++. ..+|++.-.+-.+.+...
T Consensus 19 ~~l~~~~~~v~-~~~~~~~~~~~~~~~~~dlvi~D~~l~------~~~g~~~~~~l~~~---~~~~ii~~s~~~~~~~~~ 88 (121)
T 1zh2_A 19 TALEGDGMRVF-EAETLQRGLLEAATRKPDLIILDLGLP------DGDGIEFIRDLRQW---SAVPVIVLSARSEESDKI 88 (121)
T ss_dssp HHHHTTTCEEE-EESSHHHHHHHHHHHCCSEEEEESEET------TEEHHHHHHHHHTT---CCCCEEEEESCCSHHHHH
T ss_pred HHHhcCCCEEE-EeCCHHHHHHHHhcCCCCEEEEeCCCC------CCcHHHHHHHHHhC---CCCcEEEEECCCCHHHHH
Confidence 34455677655 56666666544 345799998853211 11235677777642 268988888877888889
Q ss_pred HHHHcCcceeee
Q 020013 183 AALSLGAQGICL 194 (332)
Q Consensus 183 ~al~~GA~gV~~ 194 (332)
.++..|++++..
T Consensus 89 ~~~~~g~~~~l~ 100 (121)
T 1zh2_A 89 AALDAGADDYLS 100 (121)
T ss_dssp HHHHHTCSEEEE
T ss_pred HHHhcCCCeEEe
Confidence 999999998754
|
| >3m6m_D Sensory/regulatory protein RPFC; RPFF, REC, enoyl-COA hydratase, lyase-transferase COMP; 2.50A {Xanthomonas campestris PV} | Back alignment and structure |
|---|
Probab=87.43 E-value=8.1 Score=29.52 Aligned_cols=83 Identities=23% Similarity=0.251 Sum_probs=53.7
Q ss_pred HHHhCCCEEEEecCCHHHHHHHH-HcCCCEEEEecCCCCcccCCCCchhhhHHHHHHHh--CCCCCcEEeecCcCCHHHH
Q 020013 105 EAHSAGVKVVPQVGSFDEARKAV-NAGVDAIIVQGREAGGHVIGQDGLISLLPMVVDLI--GDRDIPIIAAGGIVDARGY 181 (332)
Q Consensus 105 ~~~~~g~~v~~~v~s~~~a~~a~-~~g~D~ivv~G~eaGGh~~~~~~~~~ll~~i~~~~--~~~~iPviaaGGI~~~~~v 181 (332)
.+.+.|..+. .+.+.+++.... ...+|.|++.-.-.+ ...+.++..+++.. ....+|+|+-.+-.+.+.+
T Consensus 33 ~L~~~g~~v~-~~~~~~~al~~~~~~~~dlvl~D~~mp~------~~g~~~~~~lr~~~~~~~~~~pii~~s~~~~~~~~ 105 (143)
T 3m6m_D 33 LLEKAGHKVL-CVNGAEQVLDAMAEEDYDAVIVDLHMPG------MNGLDMLKQLRVMQASGMRYTPVVVLSADVTPEAI 105 (143)
T ss_dssp HHHC--CEEE-EESSHHHHHHHHHHSCCSEEEEESCCSS------SCHHHHHHHHHHHHHTTCCCCCEEEEESCCCHHHH
T ss_pred HHHHcCCeEE-EeCCHHHHHHHHhcCCCCEEEEeCCCCC------CCHHHHHHHHHhchhccCCCCeEEEEeCCCCHHHH
Confidence 3445566654 467777776554 457999998533111 12356777776431 1125899888888788999
Q ss_pred HHHHHcCcceeee
Q 020013 182 VAALSLGAQGICL 194 (332)
Q Consensus 182 ~~al~~GA~gV~~ 194 (332)
.+++.+||++...
T Consensus 106 ~~~~~~Ga~~~l~ 118 (143)
T 3m6m_D 106 RACEQAGARAFLA 118 (143)
T ss_dssp HHHHHTTCSEEEE
T ss_pred HHHHHcChhheee
Confidence 9999999998753
|
| >2vws_A YFAU, 2-keto-3-deoxy sugar aldolase; lyase, escherichia coli K-12 protein YFAU, 2-keto-3-deoxy SU aldolase, degradation of homoprotocatechuate; 1.39A {Escherichia coli} PDB: 2vwt_A | Back alignment and structure |
|---|
Probab=87.33 E-value=14 Score=32.30 Aligned_cols=170 Identities=14% Similarity=0.076 Sum_probs=97.2
Q ss_pred CCCcHHHHHHHHhCCCceeec--CCC-CCCHHHHHHHHHHHHhhcCCcEEEEeecCCCCHHHHHHHHhcCCcEEEEccCC
Q 020013 21 DISGPELVAAVANAGGLGLLR--APD-WEAPDYLRDLIRKTRSLTERPFGVGVVLAFPHNENIKAILSEKVAVLQVSWGE 97 (332)
Q Consensus 21 g~s~~~la~avs~aGglG~i~--~~~-~~~~e~~~~~i~~~r~~~~~p~gvnl~~~~~~~~~~~~~~~~~~~~I~~~~g~ 97 (332)
.+.+|+.+..+..+|. .++. ... -.+.+.++..+..+.. .+.+.-|-+. ..+...++.+++.+++.|.+..=.
T Consensus 25 ~~~~p~~~e~a~~~Ga-D~v~lDlE~~~~~~~~~~~~~~a~~~-~~~~~~VRv~--~~~~~~i~~~l~~g~~~I~~P~V~ 100 (267)
T 2vws_A 25 SSTTAYMAEIAATSGY-DWLLIDGEHAPNTIQDLYHQLQAVAP-YASQPVIRPV--EGSKPLIKQVLDIGAQTLLIPMVD 100 (267)
T ss_dssp CSCCHHHHHHHHTTCC-SEEEEETTTSCCCHHHHHHHHHHHTT-SSSEEEEECS--SCCHHHHHHHHHTTCCEEEECCCC
T ss_pred eCCCHHHHHHHHhCCC-CEEEEcCCCCCCCHHHHHHHHHHHHh-CCCcEEEEeC--CCCHHHHHHHHHhCCCEEEeCCCC
Confidence 3678988888877774 3332 221 1234555555554432 2344444433 234567888889999999887533
Q ss_pred CcHHHHHHHHh---------------------------------CCCEEEEecCCHHHHHHHH---H-cCCCEEEEecC-
Q 020013 98 YSEELVLEAHS---------------------------------AGVKVVPQVGSFDEARKAV---N-AGVDAIIVQGR- 139 (332)
Q Consensus 98 ~~~~~i~~~~~---------------------------------~g~~v~~~v~s~~~a~~a~---~-~g~D~ivv~G~- 139 (332)
.+.+ ++.+.+ ..+.++..+-+++-+..+. . .|+|++.+-..
T Consensus 101 s~ee-~~~~~~~~~~~p~G~Rg~~~~~~~~~~~g~~~~y~~~~~~~~~v~~~IEt~~av~~~~eIa~~~gvd~l~iG~~D 179 (267)
T 2vws_A 101 TAEQ-ARQVVSATRYPPYGERGVGASVARAARWGRIENYMAQVNDSLCLLVQVESKTALDNLDEILDVEGIDGVFIGPAD 179 (267)
T ss_dssp SHHH-HHHHHHHTSCTTTSCCCSCGGGSGGGGGGTSTTHHHHHHHHCEEEEECCSHHHHHTHHHHHTSTTCCEEEECHHH
T ss_pred CHHH-HHHHHHHHcCCCCCccccccchhhhhhcCcchhhhhhcccccEEEEEECCHHHHHHHHHHhCCCCCCEEEEChHH
Confidence 2333 333211 1267888888876554332 2 47999988221
Q ss_pred ---CCCcccCCC--CchhhhHHHHHHHhCCCCCcEEeecCcCCHHHHHHHHHcCcceeeecccc
Q 020013 140 ---EAGGHVIGQ--DGLISLLPMVVDLIGDRDIPIIAAGGIVDARGYVAALSLGAQGICLGTRF 198 (332)
Q Consensus 140 ---eaGGh~~~~--~~~~~ll~~i~~~~~~~~iPviaaGGI~~~~~v~~al~~GA~gV~~GT~f 198 (332)
+- |+.+.. ......+.++....+..++|+.... .|++.+..++.+|.+.+.+|+-.
T Consensus 180 L~~~l-g~~~~~~~p~v~~a~~~iv~aa~aaG~~~~v~~--~d~~~a~~~~~~G~~~~s~~~d~ 240 (267)
T 2vws_A 180 LSASL-GYPDNAGHPEVQRIIETSIRRIRAAGKAAGFLA--VAPDMAQQCLAWGANFVAVGVDT 240 (267)
T ss_dssp HHHHT-TCSSSCCTHHHHHHHHHHHHHHHHTTCEEEEEC--SSHHHHHHHHHTTCCEEEEEEHH
T ss_pred HHHHh-CCCCCCCCHHHHHHHHHHHHHHHHhCCeEEEec--CCHHHHHHHHHCCCCEEEEchHH
Confidence 11 222111 1233444555444322256654432 38899999999999999998753
|
| >2o55_A Putative glycerophosphodiester phosphodiesterase; beta barrel, structural genomics, protein structure initiati 2; 2.81A {Galdieria sulphuraria} | Back alignment and structure |
|---|
Probab=87.25 E-value=2.4 Score=36.99 Aligned_cols=58 Identities=19% Similarity=0.185 Sum_probs=47.1
Q ss_pred HHHHHHhcCCcEEEEccCCCcHHHHHHHHhCCCEEEE-ec----CCHHHHHHHHHcCCCEEEE
Q 020013 79 NIKAILSEKVAVLQVSWGEYSEELVLEAHSAGVKVVP-QV----GSFDEARKAVNAGVDAIIV 136 (332)
Q Consensus 79 ~~~~~~~~~~~~I~~~~g~~~~~~i~~~~~~g~~v~~-~v----~s~~~a~~a~~~g~D~ivv 136 (332)
.+..+...+++.|..+.....+++++.+++.|++|+. ++ .+.++.+.+.+.|+|+|+.
T Consensus 181 ~~~~~~~~~~~~v~~~~~~~~~~~v~~~~~~G~~v~~wTv~~~~n~~~~~~~l~~~GvdgI~T 243 (258)
T 2o55_A 181 FVEQACYGDANGVSMLFHYLTKEQVCTAHEKGLSVTVWMPWIFDDSEEDWKKCLELQVDLICS 243 (258)
T ss_dssp HHHHHHHTTCSEEEEEGGGCCHHHHHHHHHTTCEEEEECCTTCCCCHHHHHHHHHHTCSEEEE
T ss_pred HHHHHHhcCCeEEecChhhcCHHHHHHHHHCCCEEEEeeCCCCCCCHHHHHHHHHcCCCEEEe
Confidence 3344667789999887655567899999999999875 46 7889999999999999986
|
| >2yxg_A DHDPS, dihydrodipicolinate synthase; MJ0244, TIM beta/alpha-barrel fold, structural genomics, NPPSFA; 2.20A {Methanocaldococcus jannaschii DSM2661} | Back alignment and structure |
|---|
Probab=87.21 E-value=5.1 Score=35.71 Aligned_cols=103 Identities=21% Similarity=0.294 Sum_probs=62.9
Q ss_pred HHHHHHHhcCCcEEEEc--cCCC----cH---HHHHHHHh---CCCEEEEecCC------HHHHHHHHHcCCCEEEEecC
Q 020013 78 ENIKAILSEKVAVLQVS--WGEY----SE---ELVLEAHS---AGVKVVPQVGS------FDEARKAVNAGVDAIIVQGR 139 (332)
Q Consensus 78 ~~~~~~~~~~~~~I~~~--~g~~----~~---~~i~~~~~---~g~~v~~~v~s------~~~a~~a~~~g~D~ivv~G~ 139 (332)
..++.+++.|++.+.+. -|.. .+ ++++...+ ..++|+..+++ ++.++.+.+.|+|++.+..+
T Consensus 25 ~lv~~li~~Gv~gl~~~GttGE~~~Ls~~Er~~v~~~~~~~~~gr~pviaGvg~~~t~~ai~la~~a~~~Gadavlv~~P 104 (289)
T 2yxg_A 25 ENINFLIENGVSGIVAVGTTGESPTLSHEEHKKVIEKVVDVVNGRVQVIAGAGSNCTEEAIELSVFAEDVGADAVLSITP 104 (289)
T ss_dssp HHHHHHHHTTCSEEEESSTTTTGGGSCHHHHHHHHHHHHHHHTTSSEEEEECCCSSHHHHHHHHHHHHHHTCSEEEEECC
T ss_pred HHHHHHHHCCCCEEEECccccChhhCCHHHHHHHHHHHHHHhCCCCcEEEeCCCCCHHHHHHHHHHHHhcCCCEEEECCC
Confidence 45666777899988764 1221 11 23333332 24888877763 44566788899999998665
Q ss_pred CCCcccCCCCchhhhHHHHHHHhCCCCCcEEee-----cCc-CCHHHHHHHH
Q 020013 140 EAGGHVIGQDGLISLLPMVVDLIGDRDIPIIAA-----GGI-VDARGYVAAL 185 (332)
Q Consensus 140 eaGGh~~~~~~~~~ll~~i~~~~~~~~iPviaa-----GGI-~~~~~v~~al 185 (332)
..-. ..+........++.++. ++||+.= .|+ -+++.+.+..
T Consensus 105 ~y~~--~s~~~l~~~f~~ia~a~---~lPiilYn~P~~tg~~l~~~~~~~La 151 (289)
T 2yxg_A 105 YYNK--PTQEGLRKHFGKVAESI---NLPIVLYNVPSRTAVNLEPKTVKLLA 151 (289)
T ss_dssp CSSC--CCHHHHHHHHHHHHHHC---SSCEEEEECHHHHSCCCCHHHHHHHH
T ss_pred CCCC--CCHHHHHHHHHHHHHhc---CCCEEEEeCccccCcCCCHHHHHHHH
Confidence 3211 12234566777788776 6888762 243 2677777665
|
| >1ea0_A Glutamate synthase [NADPH] large chain; oxidoreductase, iron sulphur flavoprotein; HET: OMT FMN AKG; 3.0A {Azospirillum brasilense} SCOP: b.80.4.1 c.1.4.1 d.153.1.1 PDB: 2vdc_A* | Back alignment and structure |
|---|
Probab=87.13 E-value=4.6 Score=43.99 Aligned_cols=91 Identities=12% Similarity=0.042 Sum_probs=63.8
Q ss_pred CCHHHHHHHHHHHHhhc-CCcEEEEeecCCCCHHHHHHHHhcCCcEEEEcc---C-------------CCcHHHH----H
Q 020013 46 EAPDYLRDLIRKTRSLT-ERPFGVGVVLAFPHNENIKAILSEKVAVLQVSW---G-------------EYSEELV----L 104 (332)
Q Consensus 46 ~~~e~~~~~i~~~r~~~-~~p~gvnl~~~~~~~~~~~~~~~~~~~~I~~~~---g-------------~~~~~~i----~ 104 (332)
.+++.+.+.+..+|+.+ ++|++|.+............+.++|+|+|.+.. | .+....+ +
T Consensus 975 ~s~edl~~~I~~Lk~~~~~~PV~VKlv~~~gi~~~A~~a~~AGAD~IvVsG~eGGTgasp~~~~~~~G~Pt~~aL~ev~~ 1054 (1479)
T 1ea0_A 975 YSIEDLAQLIYDLKQINPDAKVTVKLVSRSGIGTIAAGVAKANADIILISGNSGGTGASPQTSIKFAGLPWEMGLSEVHQ 1054 (1479)
T ss_dssp SSHHHHHHHHHHHHHHCTTCEEEEEEECCTTHHHHHHHHHHTTCSEEEEECTTCCCSSEETTHHHHSCCCHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHhCCCCCEEEEEcCCCChHHHHHHHHHcCCcEEEEcCCCCCCCCCchhhhcCCchhHHHHHHHHHH
Confidence 46788889999999886 789999887643323455667889999998741 1 1111222 2
Q ss_pred HHHhC----CCEEEE--ecCCHHHHHHHHHcCCCEEEE
Q 020013 105 EAHSA----GVKVVP--QVGSFDEARKAVNAGVDAIIV 136 (332)
Q Consensus 105 ~~~~~----g~~v~~--~v~s~~~a~~a~~~g~D~ivv 136 (332)
.+++. .++|+. .+.+..++.+++..|||+|-+
T Consensus 1055 al~~~glr~~VpVIAdGGIrtG~DVakALaLGAdaV~i 1092 (1479)
T 1ea0_A 1055 VLTLNRLRHRVRLRTDGGLKTGRDIVIAAMLGAEEFGI 1092 (1479)
T ss_dssp HHHTTTCTTTSEEEEESSCCSHHHHHHHHHTTCSEEEC
T ss_pred HHHHcCCCCCceEEEECCCCCHHHHHHHHHcCCCeeeE
Confidence 23322 477775 477999999999999999976
|
| >2ehh_A DHDPS, dihydrodipicolinate synthase; structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.90A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=87.11 E-value=4.3 Score=36.29 Aligned_cols=126 Identities=22% Similarity=0.234 Sum_probs=73.3
Q ss_pred HHHHHHHhcCCcEEEEc--cCCC----cH---HHHHHHHh---CCCEEEEecCC------HHHHHHHHHcCCCEEEEecC
Q 020013 78 ENIKAILSEKVAVLQVS--WGEY----SE---ELVLEAHS---AGVKVVPQVGS------FDEARKAVNAGVDAIIVQGR 139 (332)
Q Consensus 78 ~~~~~~~~~~~~~I~~~--~g~~----~~---~~i~~~~~---~g~~v~~~v~s------~~~a~~a~~~g~D~ivv~G~ 139 (332)
..++.+++.|++.+.+. .|.. .+ ++++...+ ..++|+..+++ ++.++.+.+.|+|++.+..+
T Consensus 25 ~lv~~li~~Gv~gl~~~GttGE~~~Ls~~Er~~v~~~~~~~~~grvpviaGvg~~~t~~ai~la~~A~~~Gadavlv~~P 104 (294)
T 2ehh_A 25 NLIEFHVDNGTDAILVCGTTGESPTLTFEEHEKVIEFAVKRAAGRIKVIAGTGGNATHEAVHLTAHAKEVGADGALVVVP 104 (294)
T ss_dssp HHHHHHHTTTCCEEEESSTTTTGGGSCHHHHHHHHHHHHHHHTTSSEEEEECCCSCHHHHHHHHHHHHHTTCSEEEEECC
T ss_pred HHHHHHHHCCCCEEEECccccChhhCCHHHHHHHHHHHHHHhCCCCcEEEecCCCCHHHHHHHHHHHHhcCCCEEEECCC
Confidence 45666777889988764 1221 11 23333332 24888877763 44566788999999998655
Q ss_pred CCCcccCCCCchhhhHHHHHHHhCCCCCcEEee-----cCc-CCHHHHHHHH-HcCcceeeeccccccCccCCCCHHHHH
Q 020013 140 EAGGHVIGQDGLISLLPMVVDLIGDRDIPIIAA-----GGI-VDARGYVAAL-SLGAQGICLGTRFVASEESYAHPEYKR 212 (332)
Q Consensus 140 eaGGh~~~~~~~~~ll~~i~~~~~~~~iPviaa-----GGI-~~~~~v~~al-~~GA~gV~~GT~fl~t~Es~~~~~~k~ 212 (332)
..-. ..+........++.++. ++||+.= .|+ -+++.+.+.. +. -.+..-+|+..+-..-.
T Consensus 105 ~y~~--~s~~~l~~~f~~va~a~---~lPiilYn~P~~tg~~l~~~~~~~La~~~--------pnivgiKds~gd~~~~~ 171 (294)
T 2ehh_A 105 YYNK--PTQRGLYEHFKTVAQEV---DIPIIIYNIPSRTCVEISVDTMFKLASEC--------ENIVASKESTPNMDRIS 171 (294)
T ss_dssp CSSC--CCHHHHHHHHHHHHHHC---CSCEEEEECHHHHSCCCCHHHHHHHHHHC--------TTEEEEEECCSCHHHHH
T ss_pred CCCC--CCHHHHHHHHHHHHHhc---CCCEEEEeCCcccCcCCCHHHHHHHHhhC--------CCEEEEEeCCCCHHHHH
Confidence 3211 12234566777788776 7898762 343 2677777765 33 22445567765544433
Q ss_pred HHhc
Q 020013 213 KLVE 216 (332)
Q Consensus 213 ~~~~ 216 (332)
.+.+
T Consensus 172 ~~~~ 175 (294)
T 2ehh_A 172 EIVK 175 (294)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 3433
|
| >2qgy_A Enolase from the environmental genome shotgun sequencing of the sargasso SEA; structural genomics, unknown function, PSI-2; 1.80A {Environmental sample} | Back alignment and structure |
|---|
Probab=87.10 E-value=6.2 Score=36.70 Aligned_cols=106 Identities=10% Similarity=0.081 Sum_probs=72.2
Q ss_pred HHHHHhcCCcEEEEccCCC-cH---HHHHHHHh---CCCEEEEecC---CHHHHHH----HHHcCCCEEEEecCCCCccc
Q 020013 80 IKAILSEKVAVLQVSWGEY-SE---ELVLEAHS---AGVKVVPQVG---SFDEARK----AVNAGVDAIIVQGREAGGHV 145 (332)
Q Consensus 80 ~~~~~~~~~~~I~~~~g~~-~~---~~i~~~~~---~g~~v~~~v~---s~~~a~~----a~~~g~D~ivv~G~eaGGh~ 145 (332)
+..+.+.|.+.|-++.|.. +. +.++.+++ .++++...++ +.+++.. ..+.|+++| +-+
T Consensus 157 a~~~~~~Gf~~vKik~g~~~~~~~~e~v~avR~a~G~d~~l~vDan~~~~~~~a~~~~~~l~~~~i~~i--EqP------ 228 (391)
T 2qgy_A 157 IEKFYGKKYGGIKIYPMLDSLSISIQFVEKVREIVGDELPLMLDLAVPEDLDQTKSFLKEVSSFNPYWI--EEP------ 228 (391)
T ss_dssp HHHHHHTTCSCEEECCCCSSHHHHHHHHHHHHHHHCSSSCEEEECCCCSCHHHHHHHHHHHGGGCCSEE--ECS------
T ss_pred HHHHHHcCCCEEEEccCCChHHHHHHHHHHHHHHhCCCCEEEEEcCCCCCHHHHHHHHHHHHhcCCCeE--eCC------
Confidence 3445667999999886643 23 44555655 3577877765 6666643 345688865 322
Q ss_pred CCCCchhhhHHHHHHHhCCCCCcEEeecCcCCHHHHHHHHHcC-cceeeeccc
Q 020013 146 IGQDGLISLLPMVVDLIGDRDIPIIAAGGIVDARGYVAALSLG-AQGICLGTR 197 (332)
Q Consensus 146 ~~~~~~~~ll~~i~~~~~~~~iPviaaGGI~~~~~v~~al~~G-A~gV~~GT~ 197 (332)
-+...+..+.++++.+ ++||++.+.+.+.+++.+++..| +|.|++-..
T Consensus 229 -~~~~d~~~~~~l~~~~---~iPIa~dE~~~~~~~~~~~i~~~~~d~v~ik~~ 277 (391)
T 2qgy_A 229 -VDGENISLLTEIKNTF---NMKVVTGEKQSGLVHFRELISRNAADIFNPDIS 277 (391)
T ss_dssp -SCTTCHHHHHHHHHHC---SSCEEECTTCCSHHHHHHHHHTTCCSEECCBTT
T ss_pred -CChhhHHHHHHHHhhC---CCCEEEcCCcCCHHHHHHHHHcCCCCEEEECcc
Confidence 1113466677787776 79999999999999999999887 688887433
|
| >3qfe_A Putative dihydrodipicolinate synthase family PROT; seattle structural genomics center for infectious disease, S coccidioides, valley fever; 2.35A {Coccidioides immitis} | Back alignment and structure |
|---|
Probab=87.07 E-value=2.1 Score=38.91 Aligned_cols=135 Identities=16% Similarity=0.189 Sum_probs=73.4
Q ss_pred HHHHHHHhcCCcEEEEc--cCCC----cH---HHHHHHHh---CCCEEEEecC--C----HHHHHHHHHcCCCEEEEecC
Q 020013 78 ENIKAILSEKVAVLQVS--WGEY----SE---ELVLEAHS---AGVKVVPQVG--S----FDEARKAVNAGVDAIIVQGR 139 (332)
Q Consensus 78 ~~~~~~~~~~~~~I~~~--~g~~----~~---~~i~~~~~---~g~~v~~~v~--s----~~~a~~a~~~g~D~ivv~G~ 139 (332)
..++.+++.|++.+.+. -|.. .+ ++++...+ ..++|+..++ + ++.++.+.+.|+|++++..+
T Consensus 36 ~lv~~li~~Gv~gl~v~GtTGE~~~Ls~~Er~~v~~~~~~~~~grvpviaGvg~~~t~~ai~la~~a~~~Gadavlv~~P 115 (318)
T 3qfe_A 36 RYYAYLARSGLTGLVILGTNAEAFLLTREERAQLIATARKAVGPDFPIMAGVGAHSTRQVLEHINDASVAGANYVLVLPP 115 (318)
T ss_dssp HHHHHHHTTTCSEEEESSGGGTGGGSCHHHHHHHHHHHHHHHCTTSCEEEECCCSSHHHHHHHHHHHHHHTCSEEEECCC
T ss_pred HHHHHHHHcCCCEEEeCccccChhhCCHHHHHHHHHHHHHHhCCCCcEEEeCCCCCHHHHHHHHHHHHHcCCCEEEEeCC
Confidence 45666778899988764 1221 12 23333332 3578887775 3 44566788999999999655
Q ss_pred CCCcccCCCCchhhhHHHHHHHhCCCCCcEEe------ecCc-CCHHHHHHHHH-cCcceeeeccccccCccCCCCHHHH
Q 020013 140 EAGGHVIGQDGLISLLPMVVDLIGDRDIPIIA------AGGI-VDARGYVAALS-LGAQGICLGTRFVASEESYAHPEYK 211 (332)
Q Consensus 140 eaGGh~~~~~~~~~ll~~i~~~~~~~~iPvia------aGGI-~~~~~v~~al~-~GA~gV~~GT~fl~t~Es~~~~~~k 211 (332)
-.-.....+.........+.++. ++||+. ..|+ -+++.+.+... .. .+..-+|+..+-..-
T Consensus 116 ~y~~kp~~~~~l~~~f~~ia~a~---~lPiilYn~P~~t~g~~l~~~~~~~La~~~p--------nIvgiKdssgd~~~~ 184 (318)
T 3qfe_A 116 AYFGKATTPPVIKSFFDDVSCQS---PLPVVIYNFPGVCNGIDLDSDMITTIARKNP--------NVVGVKLTCASVGKI 184 (318)
T ss_dssp CC---CCCHHHHHHHHHHHHHHC---SSCEEEEECCC----CCCCHHHHHHHHHHCT--------TEEEEEESSCCHHHH
T ss_pred cccCCCCCHHHHHHHHHHHHhhC---CCCEEEEeCCcccCCCCCCHHHHHHHHhhCC--------CEEEEEeCCCCHHHH
Confidence 22110001234566777888876 688764 2354 26677766654 32 234456665554333
Q ss_pred HHHhc-CCCceEE
Q 020013 212 RKLVE-MDKTEYT 223 (332)
Q Consensus 212 ~~~~~-~~~t~~t 223 (332)
..+.+ ....++.
T Consensus 185 ~~~~~~~~~~~f~ 197 (318)
T 3qfe_A 185 TRLAATLPPAAFS 197 (318)
T ss_dssp HHHHHHSCGGGCE
T ss_pred HHHHHhcCCCCEE
Confidence 33333 3333443
|
| >2gkg_A Response regulator homolog; social motility, receiver domain, signalling, high resolutio signaling protein; 1.00A {Myxococcus xanthus} PDB: 2i6f_A 2nt4_A 2nt3_A | Back alignment and structure |
|---|
Probab=86.98 E-value=3.5 Score=30.34 Aligned_cols=85 Identities=11% Similarity=0.034 Sum_probs=56.2
Q ss_pred HHHHHhCCCEEEEecCCHHHHHHHH-HcCCCEEEEecCCCCcccCCCCchhhhHHHHHHHhCCCCCcEEeecCcCCHHHH
Q 020013 103 VLEAHSAGVKVVPQVGSFDEARKAV-NAGVDAIIVQGREAGGHVIGQDGLISLLPMVVDLIGDRDIPIIAAGGIVDARGY 181 (332)
Q Consensus 103 i~~~~~~g~~v~~~v~s~~~a~~a~-~~g~D~ivv~G~eaGGh~~~~~~~~~ll~~i~~~~~~~~iPviaaGGI~~~~~v 181 (332)
.+.++..|..+. .+.+.+++.... +..+|.|++.-.-.+ ....+.++..+++.....++|||+- +-.+.+..
T Consensus 22 ~~~L~~~g~~v~-~~~~~~~a~~~~~~~~~dlvi~d~~~~~-----~~~g~~~~~~l~~~~~~~~~~ii~~-~~~~~~~~ 94 (127)
T 2gkg_A 22 RSALEGRGFTVD-ETTDGKGSVEQIRRDRPDLVVLAVDLSA-----GQNGYLICGKLKKDDDLKNVPIVII-GNPDGFAQ 94 (127)
T ss_dssp HHHHHHHTCEEE-EECCHHHHHHHHHHHCCSEEEEESBCGG-----GCBHHHHHHHHHHSTTTTTSCEEEE-ECGGGHHH
T ss_pred HHHHHhcCceEE-EecCHHHHHHHHHhcCCCEEEEeCCCCC-----CCCHHHHHHHHhcCccccCCCEEEE-ecCCchhH
Confidence 344555677765 677777776654 456999998532110 1133677777776521126899888 76678888
Q ss_pred HHHHHcCcceeee
Q 020013 182 VAALSLGAQGICL 194 (332)
Q Consensus 182 ~~al~~GA~gV~~ 194 (332)
..++..|++++..
T Consensus 95 ~~~~~~g~~~~l~ 107 (127)
T 2gkg_A 95 HRKLKAHADEYVA 107 (127)
T ss_dssp HHHSTTCCSEEEE
T ss_pred HHHHHhCcchhee
Confidence 8999999988653
|
| >3l5l_A Xenobiotic reductase A; TIM barrel, oxidoreductase; HET: BU3 FMN; 1.03A {Pseudomonas putida} SCOP: c.1.4.0 PDB: 3l5m_A* 3n19_B* 3n16_A* 3l68_A* 3l67_A* 3l65_A* 3l66_A* 3n14_A* 2h8z_A* 2h90_A* 2h8x_A* | Back alignment and structure |
|---|
Probab=86.97 E-value=2.3 Score=39.36 Aligned_cols=86 Identities=19% Similarity=0.147 Sum_probs=57.6
Q ss_pred HHHHHHHHHhhc--CCcEEEEeecCCC-------C---HHHHHHHHhcCCcEEEEccCC----------C--cHHHHHHH
Q 020013 51 LRDLIRKTRSLT--ERPFGVGVVLAFP-------H---NENIKAILSEKVAVLQVSWGE----------Y--SEELVLEA 106 (332)
Q Consensus 51 ~~~~i~~~r~~~--~~p~gvnl~~~~~-------~---~~~~~~~~~~~~~~I~~~~g~----------~--~~~~i~~~ 106 (332)
+.+.++.+|+.. +.|+++-+-.... . .+.++.+.+.|+|+|+++.+. + ..++++.+
T Consensus 211 ~~eiv~aVr~avg~d~pV~vRis~~~~~~~G~~~~~~~~~la~~L~~~Gvd~i~vs~g~~~~~~~~~~~~~~~~~~~~~i 290 (363)
T 3l5l_A 211 LLETLAAVREVWPENLPLTARFGVLEYDGRDEQTLEESIELARRFKAGGLDLLSVSVGFTIPDTNIPWGPAFMGPIAERV 290 (363)
T ss_dssp HHHHHHHHHTTSCTTSCEEEEEEEECSSSCHHHHHHHHHHHHHHHHHTTCCEEEEEECCCSSCCCCCCCTTTTHHHHHHH
T ss_pred HHHHHHHHHHHcCCCceEEEEecchhcCCCCCCCHHHHHHHHHHHHHcCCCEEEEecCccccccccCCCcchhHHHHHHH
Confidence 567778888765 4688886654210 1 123456677899999987431 1 12455666
Q ss_pred Hh-CCCEEEEe--cCCHHHHHHHHHcC-CCEEEE
Q 020013 107 HS-AGVKVVPQ--VGSFDEARKAVNAG-VDAIIV 136 (332)
Q Consensus 107 ~~-~g~~v~~~--v~s~~~a~~a~~~g-~D~ivv 136 (332)
++ .+++|+.. +.+.+++..+++.| +|.|.+
T Consensus 291 r~~~~iPVi~~GgI~s~e~a~~~l~~G~aD~V~i 324 (363)
T 3l5l_A 291 RREAKLPVTSAWGFGTPQLAEAALQANQLDLVSV 324 (363)
T ss_dssp HHHHTCCEEECSSTTSHHHHHHHHHTTSCSEEEC
T ss_pred HHHcCCcEEEeCCCCCHHHHHHHHHCCCccEEEe
Confidence 55 36777753 56899999999998 999876
|
| >1s8n_A Putative antiterminator; RV1626, structural genomics, transcriptional antiterminator, component system, PSI; 1.48A {Mycobacterium tuberculosis} SCOP: c.23.1.1 PDB: 1sd5_A | Back alignment and structure |
|---|
Probab=86.97 E-value=3.5 Score=33.89 Aligned_cols=82 Identities=16% Similarity=0.089 Sum_probs=58.5
Q ss_pred HHHHhCCCEEEEecCCHHHHHHHH-HcCCCEEEEecCCCCcccCCCCchhhhHHHHHHHhCCCCCcEEeecCcCCHHHHH
Q 020013 104 LEAHSAGVKVVPQVGSFDEARKAV-NAGVDAIIVQGREAGGHVIGQDGLISLLPMVVDLIGDRDIPIIAAGGIVDARGYV 182 (332)
Q Consensus 104 ~~~~~~g~~v~~~v~s~~~a~~a~-~~g~D~ivv~G~eaGGh~~~~~~~~~ll~~i~~~~~~~~iPviaaGGI~~~~~v~ 182 (332)
..+...|..++..+.+.+++.... ...+|.|++.-.-.+ ...+.++..+++.. ..|||+-.+-.+.+.+.
T Consensus 31 ~~L~~~g~~v~~~~~~~~~al~~~~~~~~dlvi~D~~~p~------~~g~~~~~~l~~~~---~~pii~lt~~~~~~~~~ 101 (205)
T 1s8n_A 31 EMLREEGYEIVGEAGDGQEAVELAELHKPDLVIMDVKMPR------RDGIDAASEIASKR---IAPIVVLTAFSQRDLVE 101 (205)
T ss_dssp HHHHHTTCEEEEEESSHHHHHHHHHHHCCSEEEEESSCSS------SCHHHHHHHHHHTT---CSCEEEEEEGGGHHHHH
T ss_pred HHHHHCCCEEEEEeCCHHHHHHHHhhcCCCEEEEeCCCCC------CChHHHHHHHHhcC---CCCEEEEecCCCHHHHH
Confidence 345567888877788888877654 457999998532111 13367777777654 46988888887888888
Q ss_pred HHHHcCcceeee
Q 020013 183 AALSLGAQGICL 194 (332)
Q Consensus 183 ~al~~GA~gV~~ 194 (332)
+++..||+++..
T Consensus 102 ~~~~~ga~~~l~ 113 (205)
T 1s8n_A 102 RARDAGAMAYLV 113 (205)
T ss_dssp TTGGGSCEEEEE
T ss_pred HHHhcCCcEEEe
Confidence 999999998764
|
| >3snk_A Response regulator CHEY-like protein; P-loop containing nucleoside triphosphate hydrolases, struct genomics; 2.02A {Mesorhizobium loti} | Back alignment and structure |
|---|
Probab=86.95 E-value=1.3 Score=33.67 Aligned_cols=82 Identities=10% Similarity=-0.020 Sum_probs=56.7
Q ss_pred HHHHhCC-CEEEEecCCHHHHHHHH-HcCCCEEEEecCCCCcccCCCCchhhhHHHHHHHhCCCCCcEEeecCcCCHHHH
Q 020013 104 LEAHSAG-VKVVPQVGSFDEARKAV-NAGVDAIIVQGREAGGHVIGQDGLISLLPMVVDLIGDRDIPIIAAGGIVDARGY 181 (332)
Q Consensus 104 ~~~~~~g-~~v~~~v~s~~~a~~a~-~~g~D~ivv~G~eaGGh~~~~~~~~~ll~~i~~~~~~~~iPviaaGGI~~~~~v 181 (332)
+.+++.| ..+. .+.+.+++.... +..+|.|++.-.-.+ ...+.++..+++... ++|||+-.+-.+.+..
T Consensus 32 ~~L~~~g~~~v~-~~~~~~~a~~~l~~~~~dlvi~D~~l~~------~~g~~~~~~l~~~~~--~~~ii~~s~~~~~~~~ 102 (135)
T 3snk_A 32 TRLDALAIYDVR-VSETDDFLKGPPADTRPGIVILDLGGGD------LLGKPGIVEARALWA--TVPLIAVSDELTSEQT 102 (135)
T ss_dssp HHHHHTSSEEEE-EECGGGGGGCCCTTCCCSEEEEEEETTG------GGGSTTHHHHHGGGT--TCCEEEEESCCCHHHH
T ss_pred HHHhhcCCeEEE-EeccHHHHHHHHhccCCCEEEEeCCCCC------chHHHHHHHHHhhCC--CCcEEEEeCCCCHHHH
Confidence 3455667 6655 566666665433 456899998533211 123567777777653 6899998888899999
Q ss_pred HHHHHcCcceeee
Q 020013 182 VAALSLGAQGICL 194 (332)
Q Consensus 182 ~~al~~GA~gV~~ 194 (332)
.+++.+||+++..
T Consensus 103 ~~~~~~g~~~~l~ 115 (135)
T 3snk_A 103 RVLVRMNASDWLH 115 (135)
T ss_dssp HHHHHTTCSEEEE
T ss_pred HHHHHcCcHhhcc
Confidence 9999999998764
|
| >3kxq_A Triosephosphate isomerase; ssgcid, NIH, niaid, SBRI, UW, gluconeogenesis, glycolysis, pentose shunt; 1.60A {Bartonella henselae} | Back alignment and structure |
|---|
Probab=86.92 E-value=3.6 Score=36.50 Aligned_cols=120 Identities=18% Similarity=0.252 Sum_probs=68.0
Q ss_pred HHHHHHhcCCcEEEEc-------cCCCcHHHH----HHHHhCCCEEEEecC-CHHHH-------------HHHHHcCC--
Q 020013 79 NIKAILSEKVAVLQVS-------WGEYSEELV----LEAHSAGVKVVPQVG-SFDEA-------------RKAVNAGV-- 131 (332)
Q Consensus 79 ~~~~~~~~~~~~I~~~-------~g~~~~~~i----~~~~~~g~~v~~~v~-s~~~a-------------~~a~~~g~-- 131 (332)
..+.+.+.|+++|.++ |+. ..+.+ +.+.+.|+.++..|+ +.++- +..+..++
T Consensus 104 S~~mLkd~G~~~VIiGHSERR~~f~E-tde~V~~Kv~~Al~~GL~pIlCVGEtleeRe~g~t~~vv~~Ql~~~l~~~~~~ 182 (275)
T 3kxq_A 104 SAFMLKEAGASHVIIGHSERRTVYQE-SDAIVRAKVQAAWRAGLVALICVGETLEERKSNKVLDVLTRQLEGSLPDGATA 182 (275)
T ss_dssp CHHHHHHHTCSEEEESCHHHHHHTCC-CHHHHHHHHHHHHHTTCEEEEEECCCHHHHHTTCHHHHHHHHHHHHSCTTCCT
T ss_pred CHHHHHHcCCCEEEECchhhccccCC-CHHHHHHHHHHHHHCCCEEEEEeCCCHHHHHCCCHHHHHHHHHHHHHcCCccc
Confidence 4567788999999985 454 34444 556678999888887 33221 11111122
Q ss_pred -CEEEEe-cCCCCcc--cCCCC---chhhhHHHHHHH-hC--CCCCcEEeecCcCCHHHHHHHHHc-Ccceeeecccccc
Q 020013 132 -DAIIVQ-GREAGGH--VIGQD---GLISLLPMVVDL-IG--DRDIPIIAAGGIVDARGYVAALSL-GAQGICLGTRFVA 200 (332)
Q Consensus 132 -D~ivv~-G~eaGGh--~~~~~---~~~~ll~~i~~~-~~--~~~iPviaaGGI~~~~~v~~al~~-GA~gV~~GT~fl~ 200 (332)
..||+. ..-+-|. +..+. .....|++.... .. ..+++|+-.|.+ +++|+.+.++. ..||+.+|.+-|.
T Consensus 183 ~~vVIAYEPVWAIGTGktAt~e~aqevh~~IR~~l~~~~~~~a~~~rIlYGGSV-~~~Na~el~~~~dIDG~LVGgASL~ 261 (275)
T 3kxq_A 183 ENIIIAYEPVWAVGTGNTATSADVAEVHAFIHHKMHSRFGDEGAKIRLLYGGSV-KPSNAFELLSTAHVNGALIGGASLK 261 (275)
T ss_dssp TTEEEEECCCC--------CHHHHHHHHHHHHHHHHHHHHHHHTTSCEEECSCC-CTTTHHHHHTSTTCCEEEESGGGSS
T ss_pred CCEEEEECChhhhcCCCCCCHHHHHHHHHHHHHHHHHhhhhhcccceEEEcCCc-CHhHHHHHHcCCccceEEeehhhcC
Confidence 355553 2223332 11110 112223322111 00 026899999999 89999999975 7899999988553
|
| >3na8_A Putative dihydrodipicolinate synthetase; lyase; HET: MSE; 1.85A {Pseudomonas aeruginosa} | Back alignment and structure |
|---|
Probab=86.90 E-value=1.9 Score=39.09 Aligned_cols=127 Identities=17% Similarity=0.137 Sum_probs=72.3
Q ss_pred HHHHHHHHhcCCcEEEEc--cCCC----cH---HHHHHHHh---CCCEEEEecC--C----HHHHHHHHHcCCCEEEEec
Q 020013 77 NENIKAILSEKVAVLQVS--WGEY----SE---ELVLEAHS---AGVKVVPQVG--S----FDEARKAVNAGVDAIIVQG 138 (332)
Q Consensus 77 ~~~~~~~~~~~~~~I~~~--~g~~----~~---~~i~~~~~---~g~~v~~~v~--s----~~~a~~a~~~g~D~ivv~G 138 (332)
...++.+++.|++.+.+. .|.. .+ ++++...+ ..++|+..++ + ++.++.+.+.|+|++.+..
T Consensus 48 ~~lv~~li~~Gv~Gi~v~GtTGE~~~Ls~~Er~~v~~~~v~~~~grvpViaGvg~~~t~~ai~la~~A~~~Gadavlv~~ 127 (315)
T 3na8_A 48 GRSIERLIDGGVHAIAPLGSTGEGAYLSDPEWDEVVDFTLKTVAHRVPTIVSVSDLTTAKTVRRAQFAESLGAEAVMVLP 127 (315)
T ss_dssp HHHHHHHHHTTCSEEECSSGGGTGGGSCHHHHHHHHHHHHHHHTTSSCBEEECCCSSHHHHHHHHHHHHHTTCSEEEECC
T ss_pred HHHHHHHHHcCCCEEEECccccChhhCCHHHHHHHHHHHHHHhCCCCcEEEecCCCCHHHHHHHHHHHHhcCCCEEEECC
Confidence 345667778899988764 1221 12 23333332 2477887765 3 3456678899999999965
Q ss_pred CCCCcccCCCCchhhhHHHHHHHhCCCCCcEEe------ecCcCCHHHHHHH-HHcCcceeeeccccccCccCCCCHHHH
Q 020013 139 REAGGHVIGQDGLISLLPMVVDLIGDRDIPIIA------AGGIVDARGYVAA-LSLGAQGICLGTRFVASEESYAHPEYK 211 (332)
Q Consensus 139 ~eaGGh~~~~~~~~~ll~~i~~~~~~~~iPvia------aGGI~~~~~v~~a-l~~GA~gV~~GT~fl~t~Es~~~~~~k 211 (332)
+-.-.. .+........++.++. ++||+. .|---+++.+.+. .+.. .+..-+|+..+-..-
T Consensus 128 P~y~~~--s~~~l~~~f~~va~a~---~lPiilYn~P~~tg~~l~~~~~~~L~a~~p--------nIvgiKdssgd~~~~ 194 (315)
T 3na8_A 128 ISYWKL--NEAEVFQHYRAVGEAI---GVPVMLYNNPGTSGIDMSVELILRIVREVD--------NVTMVKESTGDIQRM 194 (315)
T ss_dssp CCSSCC--CHHHHHHHHHHHHHHC---SSCEEEEECHHHHSCCCCHHHHHHHHHHST--------TEEEEEECSSCHHHH
T ss_pred CCCCCC--CHHHHHHHHHHHHHhC---CCcEEEEeCcchhCcCCCHHHHHHHHhcCC--------CEEEEECCCCCHHHH
Confidence 532211 2234567777888876 688774 2222256666665 3321 234456665554443
Q ss_pred HHHhc
Q 020013 212 RKLVE 216 (332)
Q Consensus 212 ~~~~~ 216 (332)
+.+++
T Consensus 195 ~~~~~ 199 (315)
T 3na8_A 195 HKLRL 199 (315)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 34444
|
| >2wkj_A N-acetylneuraminate lyase; directed evolution, sialic acid mimetics, aldolase, S base, carbohydrate metabolism, N-acetylneuraminic acid LYAS; HET: KPI PYR; 1.45A {Escherichia coli} PDB: 2wnq_A 2xfw_A* 2wpb_A* 2wnz_A* 2ygy_A* 2wo5_A* 2wnn_A* 3lbm_A 3lbc_A 3lcf_A 3lcl_A 3lcg_A 3lch_A 3lci_A 1hl2_A 1fdy_A 1fdz_A 1nal_1 3lcx_A 3lcw_A | Back alignment and structure |
|---|
Probab=86.90 E-value=5.7 Score=35.69 Aligned_cols=126 Identities=14% Similarity=0.147 Sum_probs=74.1
Q ss_pred HHHHHHHhcCCcEEEEc--cCCC----cH---HHHHHHHh---CCCEEEEecCC------HHHHHHHHHcCCCEEEEecC
Q 020013 78 ENIKAILSEKVAVLQVS--WGEY----SE---ELVLEAHS---AGVKVVPQVGS------FDEARKAVNAGVDAIIVQGR 139 (332)
Q Consensus 78 ~~~~~~~~~~~~~I~~~--~g~~----~~---~~i~~~~~---~g~~v~~~v~s------~~~a~~a~~~g~D~ivv~G~ 139 (332)
..++.+++.|++.+.+. -|.. .+ ++++...+ ..++|+..+++ ++.++.+.+.|+|++.+..+
T Consensus 36 ~lv~~li~~Gv~Gl~v~GtTGE~~~Ls~eEr~~v~~~~~~~~~grvpViaGvg~~~t~~ai~la~~A~~~Gadavlv~~P 115 (303)
T 2wkj_A 36 RLVQFNIQQGIDGLYVGGSTGEAFVQSLSEREQVLEIVAEEAKGKIKLIAHVGCVSTAESQQLAASAKRYGFDAVSAVTP 115 (303)
T ss_dssp HHHHHHHHTTCSEEEESSTTTTGGGSCHHHHHHHHHHHHHHHTTTSEEEEECCCSSHHHHHHHHHHHHHHTCSEEEEECC
T ss_pred HHHHHHHHcCCCEEEECeeccChhhCCHHHHHHHHHHHHHHhCCCCcEEEecCCCCHHHHHHHHHHHHhCCCCEEEecCC
Confidence 45666777889988764 1221 11 23333332 35888887763 44566788899999998665
Q ss_pred CCCcccCCCCchhhhHHHHHHHhCCCC-CcEEee-----cCc-CCHHHHHHHHHcCcceeeeccccccCccCCCCHHHHH
Q 020013 140 EAGGHVIGQDGLISLLPMVVDLIGDRD-IPIIAA-----GGI-VDARGYVAALSLGAQGICLGTRFVASEESYAHPEYKR 212 (332)
Q Consensus 140 eaGGh~~~~~~~~~ll~~i~~~~~~~~-iPviaa-----GGI-~~~~~v~~al~~GA~gV~~GT~fl~t~Es~~~~~~k~ 212 (332)
..-. ..+........++.++. + +||+.= .|+ -+++.+.+.... -.+..-+|+..+-..-+
T Consensus 116 ~y~~--~s~~~l~~~f~~va~a~---~~lPiilYn~P~~tg~~l~~~~~~~La~~--------pnIvgiK~s~gd~~~~~ 182 (303)
T 2wkj_A 116 FYYP--FSFEEHCDHYRAIIDSA---DGLPMVVYNIPALSGVKLTLDQINTLVTL--------PGVGALXQTSGDLYQME 182 (303)
T ss_dssp CSSC--CCHHHHHHHHHHHHHHH---TTCCEEEEECHHHHCCCCCHHHHHHHHTS--------TTEEEEEECCCCHHHHH
T ss_pred CCCC--CCHHHHHHHHHHHHHhC---CCCCEEEEeCccccCCCCCHHHHHHHhcC--------CCEEEEeCCCCCHHHHH
Confidence 3211 12234566777888877 5 898762 343 266776665432 23555667766544433
Q ss_pred HHhc
Q 020013 213 KLVE 216 (332)
Q Consensus 213 ~~~~ 216 (332)
.+.+
T Consensus 183 ~~~~ 186 (303)
T 2wkj_A 183 QIRR 186 (303)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 4443
|
| >3jr2_A Hexulose-6-phosphate synthase SGBH; 3-keto-L-gulonate-6-phosphate decarboxylase, ULAD, niaid,CSG bound, biosynthetic protein; HET: MSE; 1.80A {Vibrio cholerae} SCOP: c.1.2.0 PDB: 3ieb_A* | Back alignment and structure |
|---|
Probab=86.89 E-value=7.7 Score=32.78 Aligned_cols=100 Identities=18% Similarity=0.056 Sum_probs=60.2
Q ss_pred hcCCcEEEEccCC---CcHHHHHHHHhC--CCEEEEec---CC-HHHHHHHHHcCCCEEEEecCCCCcccCCCCchhhhH
Q 020013 85 SEKVAVLQVSWGE---YSEELVLEAHSA--GVKVVPQV---GS-FDEARKAVNAGVDAIIVQGREAGGHVIGQDGLISLL 155 (332)
Q Consensus 85 ~~~~~~I~~~~g~---~~~~~i~~~~~~--g~~v~~~v---~s-~~~a~~a~~~g~D~ivv~G~eaGGh~~~~~~~~~ll 155 (332)
+.++|++.+++-. .-.++++.+++. +.+++..+ .. ...++.+.++|+|+|++.... +......++
T Consensus 29 ~~~vd~ie~g~~~~~~~G~~~i~~lr~~~~~~~i~ld~~l~d~p~~~~~~~~~aGad~i~vh~~~------~~~~~~~~~ 102 (218)
T 3jr2_A 29 ASYVDVIEVGTILAFAEGMKAVSTLRHNHPNHILVCDMKTTDGGAILSRMAFEAGADWITVSAAA------HIATIAACK 102 (218)
T ss_dssp GGGCSEEEECHHHHHHHTTHHHHHHHHHCTTSEEEEEEEECSCHHHHHHHHHHHTCSEEEEETTS------CHHHHHHHH
T ss_pred cCCceEEEeCcHHHHhcCHHHHHHHHHhCCCCcEEEEEeecccHHHHHHHHHhcCCCEEEEecCC------CHHHHHHHH
Confidence 4468888776210 012578888775 66776432 12 245678889999999995431 001112344
Q ss_pred HHHHHHhCCCCCcEEe-ecCcCCHHHHHHHHHcCcceeee
Q 020013 156 PMVVDLIGDRDIPIIA-AGGIVDARGYVAALSLGAQGICL 194 (332)
Q Consensus 156 ~~i~~~~~~~~iPvia-aGGI~~~~~v~~al~~GA~gV~~ 194 (332)
..+.+. +++.++ .=|+.|++++..+...|+|-+.+
T Consensus 103 ~~~~~~----g~~~~~d~l~~~T~~~~~~~~~~g~d~v~~ 138 (218)
T 3jr2_A 103 KVADEL----NGEIQIEIYGNWTMQDAKAWVDLGITQAIY 138 (218)
T ss_dssp HHHHHH----TCEEEEECCSSCCHHHHHHHHHTTCCEEEE
T ss_pred HHHHHh----CCccceeeeecCCHHHHHHHHHcCccceee
Confidence 444432 455553 44556888888888899997665
|
| >3ozy_A Putative mandelate racemase; beta-alpha barrel, enolase superfamily member, M-xylarate, U function; HET: DXL; 1.30A {Bordetella bronchiseptica} PDB: 3ozm_A* 3h12_A 3op2_A* | Back alignment and structure |
|---|
Probab=86.84 E-value=6.6 Score=36.54 Aligned_cols=106 Identities=8% Similarity=0.024 Sum_probs=72.1
Q ss_pred HHHHHhcCCcEEEEccCCCcHH---HHHHHHh---CCCEEEEecC---CHHHHHH----HHHcCCCEEEEecCCCCcccC
Q 020013 80 IKAILSEKVAVLQVSWGEYSEE---LVLEAHS---AGVKVVPQVG---SFDEARK----AVNAGVDAIIVQGREAGGHVI 146 (332)
Q Consensus 80 ~~~~~~~~~~~I~~~~g~~~~~---~i~~~~~---~g~~v~~~v~---s~~~a~~----a~~~g~D~ivv~G~eaGGh~~ 146 (332)
++.+.+.|.+.+-+..|..+.+ .++.+++ .++.+...++ +.+++.+ ..+.++++| +-+
T Consensus 159 a~~~~~~G~~~iKiKvG~~~~~d~~~v~avR~a~g~d~~l~vDan~~~~~~~A~~~~~~l~~~~i~~i--EqP------- 229 (389)
T 3ozy_A 159 LAGWVEQGFTAAKLKVGRAPRKDAANLRAMRQRVGADVEILVDANQSLGRHDALAMLRILDEAGCYWF--EEP------- 229 (389)
T ss_dssp HHHHHHTTCSEEEEECCSCHHHHHHHHHHHHHHHCTTSEEEEECTTCCCHHHHHHHHHHHHHTTCSEE--ESC-------
T ss_pred HHHHHHCCCCEEeeccCCCHHHHHHHHHHHHHHcCCCceEEEECCCCcCHHHHHHHHHHHHhcCCCEE--ECC-------
Confidence 3455667999999887754443 4455554 3678887765 6666643 456688877 211
Q ss_pred CCCchhhhHHHHH-HHhCCCCCcEEeecCcCCHHHHHHHHHcC-cceeeeccc
Q 020013 147 GQDGLISLLPMVV-DLIGDRDIPIIAAGGIVDARGYVAALSLG-AQGICLGTR 197 (332)
Q Consensus 147 ~~~~~~~ll~~i~-~~~~~~~iPviaaGGI~~~~~v~~al~~G-A~gV~~GT~ 197 (332)
-+...+..+.+++ +.. ++||++.+.+.+..++..++..| +|.|++-..
T Consensus 230 ~~~~d~~~~~~l~~~~~---~iPIa~dE~i~~~~~~~~~i~~~~~d~v~ik~~ 279 (389)
T 3ozy_A 230 LSIDDIEGHRILRAQGT---PVRIATGENLYTRNAFNDYIRNDAIDVLQADAS 279 (389)
T ss_dssp SCTTCHHHHHHHHTTCC---SSEEEECTTCCHHHHHHHHHHTTCCSEECCCTT
T ss_pred CCcccHHHHHHHHhcCC---CCCEEeCCCCCCHHHHHHHHHcCCCCEEEeCcc
Confidence 1112355667777 655 79999999999999999999876 688877544
|
| >2og9_A Mandelate racemase/muconate lactonizing enzyme; NYSGXRC, protein structure initiative (PSI) II, PSI-2, 9382A mandelate racemase; 1.90A {Polaromonas SP} PDB: 3cb3_A* | Back alignment and structure |
|---|
Probab=86.82 E-value=4.6 Score=37.62 Aligned_cols=104 Identities=11% Similarity=-0.004 Sum_probs=71.3
Q ss_pred HHHHHhcCCcEEEEccCCC-cH---HHHHHHHhC---CCEEEEecC---CHHHHHH----HHHcCCCEEEEecCCCCccc
Q 020013 80 IKAILSEKVAVLQVSWGEY-SE---ELVLEAHSA---GVKVVPQVG---SFDEARK----AVNAGVDAIIVQGREAGGHV 145 (332)
Q Consensus 80 ~~~~~~~~~~~I~~~~g~~-~~---~~i~~~~~~---g~~v~~~v~---s~~~a~~----a~~~g~D~ivv~G~eaGGh~ 145 (332)
+..+.+.|.+.|.++.|.. +. +.++.+++. ++++...++ +.+++.. +.+.++++| +-+
T Consensus 170 a~~~~~~Gf~~vKik~g~~~~~~~~e~v~avR~avg~d~~l~vDan~~~~~~~a~~~~~~l~~~~i~~i--E~P------ 241 (393)
T 2og9_A 170 ASASIERGIGGIKLKVGQPDGALDIARVTAVRKHLGDAVPLMVDANQQWDRPTAQRMCRIFEPFNLVWI--EEP------ 241 (393)
T ss_dssp HHHHHHTTCCCEEEECCCSCHHHHHHHHHHHHHHHCTTSCEEEECTTCCCHHHHHHHHHHHGGGCCSCE--ECC------
T ss_pred HHHHHHcCCCEEEEecCCCCHHHHHHHHHHHHHHcCCCCEEEEECCCCCCHHHHHHHHHHHHhhCCCEE--ECC------
Confidence 3445567999999887642 22 455666653 577777765 6666644 345678765 221
Q ss_pred CCCCchhhhHHHHHHHhCCCCCcEEeecCcCCHHHHHHHHHcC-cceeeec
Q 020013 146 IGQDGLISLLPMVVDLIGDRDIPIIAAGGIVDARGYVAALSLG-AQGICLG 195 (332)
Q Consensus 146 ~~~~~~~~ll~~i~~~~~~~~iPviaaGGI~~~~~v~~al~~G-A~gV~~G 195 (332)
-+...+..+.++++.+ ++||++.+.+.+.+++.+++..| +|.|++-
T Consensus 242 -~~~~~~~~~~~l~~~~---~iPIa~dE~~~~~~~~~~~i~~~~~d~v~ik 288 (393)
T 2og9_A 242 -LDAYDHEGHAALALQF---DTPIATGEMLTSAAEHGDLIRHRAADYLMPD 288 (393)
T ss_dssp -SCTTCHHHHHHHHHHC---SSCEEECTTCCSHHHHHHHHHTTCCSEECCC
T ss_pred -CCcccHHHHHHHHHhC---CCCEEeCCCcCCHHHHHHHHHCCCCCEEeeC
Confidence 1112466677777776 79999999999999999999987 6888874
|
| >3dz1_A Dihydrodipicolinate synthase; lysine biosynthesis, pyruvate, TIM barrel, NYSGXRC, PSI2, structural genomics; 1.87A {Rhodopseudomonas palustris} SCOP: c.1.10.0 | Back alignment and structure |
|---|
Probab=86.73 E-value=2.8 Score=37.98 Aligned_cols=104 Identities=13% Similarity=0.187 Sum_probs=62.6
Q ss_pred HHHHHHHhcCCcEEEEc--cCCC----cH---HHHHHHHh--CCCEEEEecC--C----HHHHHHHHHcCCCEEEEecCC
Q 020013 78 ENIKAILSEKVAVLQVS--WGEY----SE---ELVLEAHS--AGVKVVPQVG--S----FDEARKAVNAGVDAIIVQGRE 140 (332)
Q Consensus 78 ~~~~~~~~~~~~~I~~~--~g~~----~~---~~i~~~~~--~g~~v~~~v~--s----~~~a~~a~~~g~D~ivv~G~e 140 (332)
..++.+++.|++.+.+. -|.. .+ ++++...+ ..++|+..++ + ++.++.+.+.|+|++.+..+.
T Consensus 33 ~lv~~li~~Gv~Gl~v~GtTGE~~~Lt~~Er~~v~~~~v~~~grvpViaGvg~~~t~~ai~la~~A~~~Gadavlv~~P~ 112 (313)
T 3dz1_A 33 RLTDFYAEVGCEGVTVLGILGEAPKLDAAEAEAVATRFIKRAKSMQVIVGVSAPGFAAMRRLARLSMDAGAAGVMIAPPP 112 (313)
T ss_dssp HHHHHHHHTTCSEEEESTGGGTGGGSCHHHHHHHHHHHHHHCTTSEEEEECCCSSHHHHHHHHHHHHHHTCSEEEECCCT
T ss_pred HHHHHHHHCCCCEEEeCccCcChhhCCHHHHHHHHHHHHHHcCCCcEEEecCCCCHHHHHHHHHHHHHcCCCEEEECCCC
Confidence 45666777888887664 1221 11 33343333 2578887775 3 445667889999999996553
Q ss_pred CCcccCCCCchhhhHHHHHHHhCCCCCcEEe------ecCcCCHHHHHHHH
Q 020013 141 AGGHVIGQDGLISLLPMVVDLIGDRDIPIIA------AGGIVDARGYVAAL 185 (332)
Q Consensus 141 aGGh~~~~~~~~~ll~~i~~~~~~~~iPvia------aGGI~~~~~v~~al 185 (332)
. .. .+.........+.++.+. ++||+. .|---+++.+.+..
T Consensus 113 ~--~~-s~~~l~~~f~~va~a~~~-~lPiilYn~P~~tg~~l~~~~~~~La 159 (313)
T 3dz1_A 113 S--LR-TDEQITTYFRQATEAIGD-DVPWVLQDYPLTLSVVMTPKVIRQIV 159 (313)
T ss_dssp T--CC-SHHHHHHHHHHHHHHHCT-TSCEEEEECHHHHCCCCCHHHHHHHH
T ss_pred C--CC-CHHHHHHHHHHHHHhCCC-CCcEEEEeCccccCcCCCHHHHHHHH
Confidence 1 11 234557777888888721 289886 33223666666655
|
| >1o5k_A DHDPS, dihydrodipicolinate synthase; TM1521, structural genomics, J protein structure initiative, joint center for structural G lyase; HET: MCL; 1.80A {Thermotoga maritima} SCOP: c.1.10.1 PDB: 3pb2_A 3pb0_A | Back alignment and structure |
|---|
Probab=86.59 E-value=3.1 Score=37.54 Aligned_cols=120 Identities=19% Similarity=0.240 Sum_probs=69.9
Q ss_pred HHHHHHHhcCCcEEEEc--cCCC----cH---HHHHHHHh---CCCEEEEecCC------HHHHHHHHHcCCCEEEEecC
Q 020013 78 ENIKAILSEKVAVLQVS--WGEY----SE---ELVLEAHS---AGVKVVPQVGS------FDEARKAVNAGVDAIIVQGR 139 (332)
Q Consensus 78 ~~~~~~~~~~~~~I~~~--~g~~----~~---~~i~~~~~---~g~~v~~~v~s------~~~a~~a~~~g~D~ivv~G~ 139 (332)
..++.+++.|++.+.+. .|.. .+ ++++...+ ..++|+..+++ ++.++.+.+.|+|++.+..+
T Consensus 37 ~lv~~li~~Gv~gl~v~GtTGE~~~Ls~eEr~~vi~~~~~~~~grvpViaGvg~~st~~ai~la~~A~~~Gadavlv~~P 116 (306)
T 1o5k_A 37 RLVRYQLENGVNALIVLGTTGESPTVNEDEREKLVSRTLEIVDGKIPVIVGAGTNSTEKTLKLVKQAEKLGANGVLVVTP 116 (306)
T ss_dssp HHHHHHHHTTCCEEEESSGGGTGGGCCHHHHHHHHHHHHHHHTTSSCEEEECCCSCHHHHHHHHHHHHHHTCSEEEEECC
T ss_pred HHHHHHHHcCCCEEEeCccccchhhCCHHHHHHHHHHHHHHhCCCCeEEEcCCCccHHHHHHHHHHHHhcCCCEEEECCC
Confidence 45666778899988764 1221 11 23333332 24788877763 44566788899999998665
Q ss_pred CCCcccCCCCchhhhHHHHHHHhCCCCCcEEee-----cCc-CCHHHHHHHH-HcCcceeeeccccccCccCCCCHHH
Q 020013 140 EAGGHVIGQDGLISLLPMVVDLIGDRDIPIIAA-----GGI-VDARGYVAAL-SLGAQGICLGTRFVASEESYAHPEY 210 (332)
Q Consensus 140 eaGGh~~~~~~~~~ll~~i~~~~~~~~iPviaa-----GGI-~~~~~v~~al-~~GA~gV~~GT~fl~t~Es~~~~~~ 210 (332)
..-. ..+........++.++. ++||+.= .|+ -+++.+.+.. +. -.+..-+|+..+-..
T Consensus 117 ~y~~--~s~~~l~~~f~~va~a~---~lPiilYn~P~~tg~~l~~~~~~~La~~~--------pnIvgiKdssgd~~~ 181 (306)
T 1o5k_A 117 YYNK--PTQEGLYQHYKYISERT---DLGIVVYNVPGRTGVNVLPETAARIAADL--------KNVVGIXEANPDIDQ 181 (306)
T ss_dssp CSSC--CCHHHHHHHHHHHHTTC---SSCEEEEECHHHHSCCCCHHHHHHHHHHC--------TTEEEEEECCCCHHH
T ss_pred CCCC--CCHHHHHHHHHHHHHhC---CCCEEEEeCccccCcCCCHHHHHHHHHhC--------CCEEEEeCCCCCHHH
Confidence 3211 12234466666777665 6898762 343 2677777665 33 224455666555433
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 332 | ||||
| d1y0ea_ | 222 | c.1.2.5 (A:) Putative N-acetylmannosamine-6-phosph | 1e-15 | |
| d1yxya1 | 230 | c.1.2.5 (A:4-233) Putative N-acetylmannosamine-6-p | 4e-12 | |
| d1ofda2 | 809 | c.1.4.1 (A:431-1239) Alpha subunit of glutamate sy | 1e-07 | |
| d1jr1a1 | 378 | c.1.5.1 (A:17-112,A:233-514) Inosine monophosphate | 4e-07 | |
| d1ea0a2 | 771 | c.1.4.1 (A:423-1193) Alpha subunit of glutamate sy | 1e-06 | |
| d1vcfa1 | 310 | c.1.4.1 (A:23-332) Isopentenyl-diphosphate delta-i | 3e-04 | |
| d1p0ka_ | 329 | c.1.4.1 (A:) Isopentenyl-diphosphate delta-isomera | 6e-04 |
| >d1y0ea_ c.1.2.5 (A:) Putative N-acetylmannosamine-6-phosphate 2-epimerase NanE {Staphylococcus aureus [TaxId: 1280]} Length = 222 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Ribulose-phoshate binding barrel family: NanE-like domain: Putative N-acetylmannosamine-6-phosphate 2-epimerase NanE species: Staphylococcus aureus [TaxId: 1280]
Score = 72.6 bits (177), Expect = 1e-15
Identities = 32/195 (16%), Positives = 71/195 (36%), Gaps = 12/195 (6%)
Query: 14 VQAPLGPDISGPELVAAVANA---GGLGLLRAPDWEAPDYLRDLIRKTRSLTERPFGVGV 70
QA + +++ +A A GG +RA E +++ + +
Sbjct: 11 CQALPDEPLHSSFIMSKMALAAYEGGAVGIRANTKEDILAIKETVDLPVIGIVKRDYDHS 70
Query: 71 VLAF-PHNENIKAILSEKVAVLQV------SWGEYSEELVLEAHSAG--VKVVPQVGSFD 121
+ ++ + ++ + V+ + E +ELV + V+++ + + +
Sbjct: 71 DVFITATSKEVDELIESQCEVIALDATLQQRPKETLDELVSYIRTHAPNVEIMADIATVE 130
Query: 122 EARKAVNAGVDAIIVQGREAGGHVIGQDGLISLLPMVVDLIGDRDIPIIAAGGIVDARGY 181
EA+ A G D I + GQ + + D++ D +IA G ++ Y
Sbjct: 131 EAKNAARLGFDYIGTTLHGYTSYTQGQLLYQNDFQFLKDVLQSVDAKVIAEGNVITPDMY 190
Query: 182 VAALSLGAQGICLGT 196
+ LG +G
Sbjct: 191 KRVMDLGVHCSVVGG 205
|
| >d1yxya1 c.1.2.5 (A:4-233) Putative N-acetylmannosamine-6-phosphate 2-epimerase NanE {Streptococcus pyogenes [TaxId: 1314]} Length = 230 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Ribulose-phoshate binding barrel family: NanE-like domain: Putative N-acetylmannosamine-6-phosphate 2-epimerase NanE species: Streptococcus pyogenes [TaxId: 1314]
Score = 62.6 bits (151), Expect = 4e-12
Identities = 30/199 (15%), Positives = 60/199 (30%), Gaps = 18/199 (9%)
Query: 13 IVQAPLG--PDISGPELVAAVANA---GGLGLLRAPDWEAPDYLRDLIRK-TRSLTERPF 66
QA G ++ +A A G +RA ++ + + ++ +
Sbjct: 18 SCQALPGEPLYSETGGIMPLMAKAAQEAGAVGIRANSVRDIKEIQAITDLPIIGIIKKDY 77
Query: 67 GVGVVLAFPHNENIKAILSEKVAVLQVSWGEYSEELVLEA---------HSAGVKVVPQV 117
+ + + +AV+ + + L+ ++ +
Sbjct: 78 PPQEPFITATMTEVDQLAALNIAVIAMDCTKRDRHDGLDIASFIRQVKEKYPNQLLMADI 137
Query: 118 GSFDEARKAVNAGVDAIIVQGREAGGHVIGQDGLISLLPMVVDLIGDRDIPIIAAGGIVD 177
+FDE A AG+D + + + G L + I +IA G I
Sbjct: 138 STFDEGLVAHQAGIDFVGTTLSGYTPYSRQEAGPDVALIEALC---KAGIAVIAEGKIHS 194
Query: 178 ARGYVAALSLGAQGICLGT 196
LG GI +G
Sbjct: 195 PEEAKKINDLGVAGIVVGG 213
|
| >d1ofda2 c.1.4.1 (A:431-1239) Alpha subunit of glutamate synthase, central and FMN domains {Synechocystis sp. [TaxId: 1143]} Length = 809 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: FMN-linked oxidoreductases family: FMN-linked oxidoreductases domain: Alpha subunit of glutamate synthase, central and FMN domains species: Synechocystis sp. [TaxId: 1143]
Score = 51.1 bits (122), Expect = 1e-07
Identities = 21/100 (21%), Positives = 34/100 (34%), Gaps = 11/100 (11%)
Query: 110 GVKVVPQVGSFDEARKAVNAGVDAIIVQGREAG---GHVIGQDG----LISLLPMVV--- 159
VK+V ++G A A D I + G + G + + V
Sbjct: 602 SVKLVAEIGIGTIAAGVAKANADIIQISGHDGGTGASPLSSIKHAGSPWELGVTEVHRVL 661
Query: 160 DLIGDRD-IPIIAAGGIVDARGYVAALSLGAQGICLGTRF 198
RD + + A GG+ V A +GA+ G+
Sbjct: 662 MENQLRDRVLLRADGGLKTGWDVVMAALMGAEEYGFGSIA 701
|
| >d1jr1a1 c.1.5.1 (A:17-112,A:233-514) Inosine monophosphate dehydrogenase (IMPDH) {Chinese hamster (Cricetulus griseus) [TaxId: 10029]} Length = 378 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Inosine monophosphate dehydrogenase (IMPDH) family: Inosine monophosphate dehydrogenase (IMPDH) domain: Inosine monophosphate dehydrogenase (IMPDH) species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]
Score = 49.0 bits (116), Expect = 4e-07
Identities = 47/296 (15%), Positives = 99/296 (33%), Gaps = 35/296 (11%)
Query: 7 LGFEYGIVQAPLGPDISGPELVAAVANAGGLGLL--------------RAPDWEAPDYLR 52
+ + +V +P+ ++ + A+A GG+G + + +E
Sbjct: 43 ITLKTPLVSSPMDT-VTEAGMAIAMALTGGIGFIHHNCTPEFQANEVRKVKKYEQYPLAS 101
Query: 53 DLIRKTRSLTERPFGVGVVLAFPHNENIKAILSEKVAVLQVSWGEYSEELVLEAHSAGVK 112
+K + L G + + A + V + ++
Sbjct: 102 KDAKK-QLLCGAAIGTHEDDKYRLDLLALAGVDVVVLDSSQGNSIFQINMIKYMKEKYPN 160
Query: 113 VVPQVGSF---DEARKAVNAGVDAIIVQGREAGGHVIGQDGLI-----SLLPMVVDLIGD 164
+ G+ +A+ ++AGVDA+ V + + + + V +
Sbjct: 161 LQVIGGNVVTAAQAKNLIDAGVDALRVGMGCGSICITQEVLACGRPQATAVYKVSEYARR 220
Query: 165 RDIPIIAAGGIVDARGYVAALSLGAQGICLGTRFVASEESYAHPEYKRKLVEMDKTEYTD 224
+P+IA GGI + AL+LGA + +G+ A+ E+ + +
Sbjct: 221 FGVPVIADGGIQNVGHIAKALALGASTVMMGSLLAATTEAPGEYFFSDGIRLK------- 273
Query: 225 VFGRARWPGAPHRVLQTPFFSNWKNIPAHENEVNQPIIGRSTIHG-IEKKIHRLAG 279
+ R G+ + + N A + +V Q + G G I K + L
Sbjct: 274 ---KYRGMGSLDAMDKHLSSQNRYFSEADKIKVAQGVSGAVQDKGSIHKFVPYLIA 326
|
| >d1ea0a2 c.1.4.1 (A:423-1193) Alpha subunit of glutamate synthase, central and FMN domains {Azospirillum brasilense [TaxId: 192]} Length = 771 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: FMN-linked oxidoreductases family: FMN-linked oxidoreductases domain: Alpha subunit of glutamate synthase, central and FMN domains species: Azospirillum brasilense [TaxId: 192]
Score = 47.6 bits (113), Expect = 1e-06
Identities = 23/100 (23%), Positives = 35/100 (35%), Gaps = 11/100 (11%)
Query: 110 GVKVVPQVGSFDEARKAVNAGVDAIIVQGREAG--------GHVIGQDGLISLLPMVVDL 161
VK+V + G A A D I++ G G G + L + L
Sbjct: 575 TVKLVSRSGIGTIAAGVAKANADIILISGNSGGTGASPQTSIKFAGLPWEMGLSEVHQVL 634
Query: 162 IGD---RDIPIIAAGGIVDARGYVAALSLGAQGICLGTRF 198
+ + + GG+ R V A LGA+ +GT
Sbjct: 635 TLNRLRHRVRLRTDGGLKTGRDIVIAAMLGAEEFGIGTAS 674
|
| >d1vcfa1 c.1.4.1 (A:23-332) Isopentenyl-diphosphate delta-isomerase {Thermus thermophilus [TaxId: 274]} Length = 310 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: FMN-linked oxidoreductases family: FMN-linked oxidoreductases domain: Isopentenyl-diphosphate delta-isomerase species: Thermus thermophilus [TaxId: 274]
Score = 39.5 bits (91), Expect = 3e-04
Identities = 18/104 (17%), Positives = 35/104 (33%), Gaps = 15/104 (14%)
Query: 111 VKVVPQVGSFDEARKAVNAGVDAIIVQGREAGGHVIGQDGLISLLPMVVDLIG------- 163
VK V S + A + + A+ V G ++ + +L
Sbjct: 164 VKEVGHGLSREAALALRDLPLAAVDVAGAGGTSWARVEEWVRFGEVRHPELCEIGIPTAR 223
Query: 164 --------DRDIPIIAAGGIVDARGYVAALSLGAQGICLGTRFV 199
+P++A+GG+ AL+LGA + + +
Sbjct: 224 AILEVREVLPHLPLVASGGVYTGTDGAKALALGADLLAVARPLL 267
|
| >d1p0ka_ c.1.4.1 (A:) Isopentenyl-diphosphate delta-isomerase {Bacillus subtilis [TaxId: 1423]} Length = 329 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: FMN-linked oxidoreductases family: FMN-linked oxidoreductases domain: Isopentenyl-diphosphate delta-isomerase species: Bacillus subtilis [TaxId: 1423]
Score = 38.7 bits (89), Expect = 6e-04
Identities = 23/101 (22%), Positives = 35/101 (34%), Gaps = 13/101 (12%)
Query: 111 VKVVPQVGSFDEARKAVNAGVDAIIVQGREAG------------GHVIGQDGLISLLPMV 158
VK V S A K AG A+ + G IS +
Sbjct: 163 VKEVGFGMSKASAGKLYEAGAAAVDIGGYGGTNFSKIENLRRQRQISFFNSWGISTAASL 222
Query: 159 VDLIGDR-DIPIIAAGGIVDARGYVAALSLGAQGICLGTRF 198
++ + +IA+GG+ DA A++LGA + F
Sbjct: 223 AEIRSEFPASTMIASGGLQDALDVAKAIALGASCTGMAGHF 263
|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 332 | |||
| d1vrda1 | 330 | Inosine monophosphate dehydrogenase (IMPDH) {Therm | 99.95 | |
| d1jr1a1 | 378 | Inosine monophosphate dehydrogenase (IMPDH) {Chine | 99.94 | |
| d1zfja1 | 365 | Inosine monophosphate dehydrogenase (IMPDH) {Strep | 99.88 | |
| d1eepa_ | 388 | Inosine monophosphate dehydrogenase (IMPDH) {Lyme | 99.85 | |
| d1pvna1 | 362 | Inosine monophosphate dehydrogenase (IMPDH) {Tritr | 99.75 | |
| d2cu0a1 | 368 | Inosine monophosphate dehydrogenase (IMPDH) {Pyroc | 99.74 | |
| d1y0ea_ | 222 | Putative N-acetylmannosamine-6-phosphate 2-epimera | 99.62 | |
| d1yxya1 | 230 | Putative N-acetylmannosamine-6-phosphate 2-epimera | 99.58 | |
| d1wa3a1 | 202 | KDPG aldolase {Thermotoga maritima [TaxId: 2336]} | 99.54 | |
| d1p0ka_ | 329 | Isopentenyl-diphosphate delta-isomerase {Bacillus | 99.48 | |
| d1wbha1 | 213 | KDPG aldolase {Escherichia coli [TaxId: 562]} | 99.47 | |
| d1vhca_ | 212 | Hypothetical protein HI0047 {Haemophilus influenza | 99.41 | |
| d1tb3a1 | 349 | Hydroxyacid oxidase {Rat (Rattus norvegicus) [TaxI | 99.39 | |
| d1xi3a_ | 206 | Thiamin phosphate synthase {Archaeon (Pyrococcus f | 99.35 | |
| d1vcfa1 | 310 | Isopentenyl-diphosphate delta-isomerase {Thermus t | 99.34 | |
| d1mxsa_ | 216 | KDPG aldolase {Pseudomonas putida [TaxId: 303]} | 99.31 | |
| d1gtea2 | 312 | Dihydropyrimidine dehydrogenase, domain 4 {Pig (Su | 99.31 | |
| d1vhna_ | 305 | Putative flavin oxidoreducatase TM0096 {Thermotoga | 99.23 | |
| d1p4ca_ | 353 | Membrane-associated (S)-mandelate dehydrogenase {P | 99.21 | |
| d1kbia1 | 414 | Flavocytochrome b2, C-terminal domain {Baker's yea | 99.19 | |
| d1a53a_ | 247 | Indole-3-glycerophosphate synthase, IPGS {Archaeon | 99.18 | |
| d2tpsa_ | 226 | Thiamin phosphate synthase {Bacillus subtilis [Tax | 99.18 | |
| d1nsja_ | 205 | N-(5'phosphoribosyl)antranilate isomerase, PRAI {T | 99.17 | |
| d1goxa_ | 359 | Glycolate oxidase {Spinach (Spinacia oleracea) [Ta | 99.17 | |
| d1v5xa_ | 200 | N-(5'phosphoribosyl)antranilate isomerase, PRAI {T | 99.15 | |
| d1piia1 | 198 | N-(5'phosphoribosyl)antranilate isomerase, PRAI {E | 99.06 | |
| d1geqa_ | 248 | Trp synthase alpha-subunit {Archaeon Pyrococcus fu | 99.06 | |
| d1juba_ | 311 | Dihydroorotate dehydrogenase {Lactococcus lactis, | 99.0 | |
| d1qopa_ | 267 | Trp synthase alpha-subunit {Salmonella typhimurium | 98.97 | |
| d1vc4a_ | 254 | Indole-3-glycerophosphate synthase, IPGS {Thermus | 98.97 | |
| d1piia2 | 254 | Indole-3-glycerophosphate synthase, IPGS {Escheric | 98.96 | |
| d1h1ya_ | 220 | D-ribulose-5-phosphate 3-epimerase {Rice (Oryza sa | 98.96 | |
| d1rd5a_ | 261 | Trp synthase alpha-subunit {Maize (Zea mays) [TaxI | 98.95 | |
| d2flia1 | 217 | D-ribulose-5-phosphate 3-epimerase {Streptococcus | 98.91 | |
| d1ep3a_ | 311 | Dihydroorotate dehydrogenase {Lactococcus lactis, | 98.91 | |
| d1rpxa_ | 230 | D-ribulose-5-phosphate 3-epimerase {Potato (Solanu | 98.84 | |
| d1ujpa_ | 271 | Trp synthase alpha-subunit {Thermus thermophilus [ | 98.84 | |
| d2b4ga1 | 312 | Dihydroorotate dehydrogenase {Trypanosoma brucei [ | 98.82 | |
| d1w0ma_ | 226 | Triosephosphate isomerase {Thermoproteus tenax [Ta | 98.81 | |
| d1f76a_ | 336 | Dihydroorotate dehydrogenase {Escherichia coli [Ta | 98.81 | |
| d1i4na_ | 251 | Indole-3-glycerophosphate synthase, IPGS {Thermoto | 98.79 | |
| d1tqja_ | 221 | D-ribulose-5-phosphate 3-epimerase {Synechocystis | 98.72 | |
| d1tv5a1 | 409 | Dihydroorotate dehydrogenase {Plasmodium falciparu | 98.71 | |
| d1xm3a_ | 251 | Thiazole biosynthesis protein ThiG {Bacillus subti | 98.66 | |
| d1d3ga_ | 367 | Dihydroorotate dehydrogenase {Human (Homo sapiens) | 98.63 | |
| d1tqxa_ | 221 | D-ribulose-5-phosphate 3-epimerase {Plasmodium fal | 98.59 | |
| d1wv2a_ | 243 | Thiazole biosynthesis protein ThiG {Pseudomonas ae | 98.57 | |
| d1hg3a_ | 224 | Triosephosphate isomerase {Archaeon Pyrococcus woe | 98.55 | |
| d1znna1 | 254 | Pyridoxal biosynthesis lyase PdxS {Bacillus stearo | 98.41 | |
| d1ea0a2 | 771 | Alpha subunit of glutamate synthase, central and F | 98.33 | |
| d1q6oa_ | 213 | 3-keto-L-gulonate 6-phosphate decarboxylase {Esche | 98.31 | |
| d1ofda2 | 809 | Alpha subunit of glutamate synthase, central and F | 98.25 | |
| d1thfd_ | 253 | Cyclase subunit (or domain) of imidazoleglycerolph | 98.11 | |
| d1ka9f_ | 251 | Cyclase subunit (or domain) of imidazoleglycerolph | 98.06 | |
| d1h5ya_ | 252 | Cyclase subunit (or domain) of imidazoleglycerolph | 98.04 | |
| d1vzwa1 | 239 | Phosphoribosylformimino-5-aminoimidazole carboxami | 97.97 | |
| d1z41a1 | 337 | NADPH dehydrogenase NamA {Bacillus subtilis [TaxId | 97.81 | |
| d1qpoa1 | 169 | Quinolinic acid phosphoribosyltransferase (Nicotin | 97.76 | |
| d1qapa1 | 167 | Quinolinic acid phosphoribosyltransferase (Nicotin | 97.58 | |
| d1djqa1 | 340 | Trimethylamine dehydrogenase, N-terminal domain {M | 97.57 | |
| d1o4ua1 | 170 | Quinolinic acid phosphoribosyltransferase (Nicotin | 97.52 | |
| d1qo2a_ | 241 | Phosphoribosylformimino-5-aminoimidazole carboxami | 97.5 | |
| d1ps9a1 | 330 | 2,4-dienoyl-CoA reductase, N-terminal domain {Esch | 97.43 | |
| d1jvna1 | 323 | Cyclase subunit (or domain) of imidazoleglycerolph | 97.29 | |
| d1ub3a_ | 211 | Deoxyribose-phosphate aldolase DeoC {Thermus therm | 97.2 | |
| d1gvfa_ | 284 | Tagatose-1,6-bisphosphate aldolase {Escherichia co | 96.92 | |
| d1viza_ | 229 | PcrB protein homolog YerE {Bacillus subtilis [TaxI | 96.78 | |
| d1thfd_ | 253 | Cyclase subunit (or domain) of imidazoleglycerolph | 96.77 | |
| d1o0ya_ | 251 | Deoxyribose-phosphate aldolase DeoC {Thermotoga ma | 96.74 | |
| d1h5ya_ | 252 | Cyclase subunit (or domain) of imidazoleglycerolph | 96.73 | |
| d2f6ua1 | 231 | (S)-3-O-geranylgeranylglyceryl phosphate synthase | 96.71 | |
| d1eepa_ | 388 | Inosine monophosphate dehydrogenase (IMPDH) {Lyme | 96.71 | |
| d1jvna1 | 323 | Cyclase subunit (or domain) of imidazoleglycerolph | 96.67 | |
| d1vzwa1 | 239 | Phosphoribosylformimino-5-aminoimidazole carboxami | 96.66 | |
| d1ka9f_ | 251 | Cyclase subunit (or domain) of imidazoleglycerolph | 96.62 | |
| d1ojxa_ | 251 | Archaeal fructose 1,6-bisphosphate aldolase {Archa | 96.52 | |
| d1twda_ | 247 | Copper homeostasis protein CutC {Shigella flexneri | 96.5 | |
| d1vhca_ | 212 | Hypothetical protein HI0047 {Haemophilus influenza | 96.49 | |
| d1wbha1 | 213 | KDPG aldolase {Escherichia coli [TaxId: 562]} | 96.47 | |
| d1wa3a1 | 202 | KDPG aldolase {Thermotoga maritima [TaxId: 2336]} | 96.37 | |
| d1mxsa_ | 216 | KDPG aldolase {Pseudomonas putida [TaxId: 303]} | 96.36 | |
| d1zfja1 | 365 | Inosine monophosphate dehydrogenase (IMPDH) {Strep | 96.31 | |
| d1rvga_ | 305 | Fructose-bisphosphate aldolase (FBP aldolase) {The | 96.23 | |
| d1mzha_ | 225 | Deoxyribose-phosphate aldolase DeoC {Aquifex aeoli | 96.22 | |
| d1vrda1 | 330 | Inosine monophosphate dehydrogenase (IMPDH) {Therm | 96.06 | |
| d1m3ua_ | 262 | Ketopantoate hydroxymethyltransferase PanB {Escher | 95.89 | |
| d1n7ka_ | 234 | Deoxyribose-phosphate aldolase DeoC {Archaeon Aero | 95.83 | |
| d1icpa_ | 364 | 12-oxophytodienoate reductase (OPR, OYE homolog) { | 95.82 | |
| d1u0sy_ | 118 | CheY protein {Thermotoga maritima [TaxId: 2336]} | 95.61 | |
| d1o66a_ | 260 | Ketopantoate hydroxymethyltransferase PanB {Neisse | 95.55 | |
| d1vpxa_ | 218 | Decameric fructose-6-phosphate aldolase/transaldol | 95.5 | |
| d1e0ta2 | 246 | Pyruvate kinase, N-terminal domain {Escherichia co | 95.46 | |
| d1wx0a1 | 211 | Decameric fructose-6-phosphate aldolase/transaldol | 95.44 | |
| d1oy0a_ | 262 | Ketopantoate hydroxymethyltransferase PanB {Mycoba | 95.42 | |
| d1vr6a1 | 338 | 3-deoxy-D-arabino-heptulosonate-7-phosphate syntha | 95.37 | |
| d1twda_ | 247 | Copper homeostasis protein CutC {Shigella flexneri | 95.36 | |
| d1dxea_ | 253 | 2-dehydro-3-deoxy-galactarate aldolase {Escherichi | 95.35 | |
| d1vyra_ | 363 | Pentaerythritol tetranirate reductase {Enterobacte | 95.25 | |
| d2r25b1 | 128 | Response regulator Sin1 {Baker's yeast (Saccharomy | 95.23 | |
| d2czda1 | 206 | Orotidine 5'-monophosphate decarboxylase (OMP deca | 95.15 | |
| d1xhfa1 | 121 | Aerobic respiration control protein ArcA, N-termin | 95.05 | |
| d1qo2a_ | 241 | Phosphoribosylformimino-5-aminoimidazole carboxami | 94.98 | |
| d1p1xa_ | 250 | Deoxyribose-phosphate aldolase DeoC {Escherichia c | 94.94 | |
| d1gwja_ | 374 | Morphinone reductase {Pseudomonas putida [TaxId: 3 | 94.85 | |
| d1vkfa_ | 172 | Glycerol uptake operon antiterminator-related prot | 94.71 | |
| d1a3xa2 | 265 | Pyruvate kinase, N-terminal domain {Baker's yeast | 94.68 | |
| d2pl1a1 | 119 | PhoP receiver domain {Escherichia coli [TaxId: 562 | 94.59 | |
| d1vc4a_ | 254 | Indole-3-glycerophosphate synthase, IPGS {Thermus | 94.58 | |
| d1jr1a1 | 378 | Inosine monophosphate dehydrogenase (IMPDH) {Chine | 94.55 | |
| d1pkla2 | 258 | Pyruvate kinase, N-terminal domain {Leishmania mex | 94.54 | |
| d1jbea_ | 128 | CheY protein {Escherichia coli [TaxId: 562]} | 94.42 | |
| d1peya_ | 119 | Sporulation response regulator Spo0F {Bacillus sub | 94.41 | |
| d1xkya1 | 292 | Dihydrodipicolinate synthase {Bacillus anthracis [ | 94.37 | |
| d1krwa_ | 123 | NTRC receiver domain {Salmonella typhimurium [TaxI | 94.23 | |
| d1izca_ | 299 | Macrophomate synthase {Macrophoma commelinae [TaxI | 94.22 | |
| d1mb3a_ | 123 | Cell division response regulator DivK {Caulobacter | 94.04 | |
| d1s8na_ | 190 | Probable two-component system transcriptional regu | 93.94 | |
| d2a9pa1 | 117 | DNA-binding response regulator MicA, N-terminal do | 93.92 | |
| d1p6qa_ | 129 | CheY protein {Sinorhizobium meliloti, CheY2 [TaxId | 93.88 | |
| d1i3ca_ | 144 | Response regulator for cyanobacterial phytochrome | 93.88 | |
| d1ea0a2 | 771 | Alpha subunit of glutamate synthase, central and F | 93.86 | |
| d1l6wa_ | 220 | Decameric fructose-6-phosphate aldolase/transaldol | 93.84 | |
| d1ccwa_ | 137 | Glutamate mutase, small subunit {Clostridium cochl | 93.8 | |
| d2ayxa1 | 133 | Sensor kinase protein RcsC, C-terminal domain {Esc | 93.77 | |
| d2g50a2 | 282 | Pyruvate kinase, N-terminal domain {Rabbit (Orycto | 93.73 | |
| d1zesa1 | 121 | PhoB receiver domain {Escherichia coli [TaxId: 562 | 93.63 | |
| d1ny5a1 | 137 | Transcriptional activator sigm54 (NtrC1), N-termin | 93.52 | |
| d2p10a1 | 197 | Uncharacterized protein Mll9387 {Mesorhizobium lot | 93.48 | |
| d1to3a_ | 291 | Putative aldolase YihT {Salmonella typhimurium [Ta | 93.44 | |
| d7reqa2 | 168 | Methylmalonyl-CoA mutase alpha subunit, C-terminal | 93.41 | |
| d1qwga_ | 251 | (2r)-phospho-3-sulfolactate synthase ComA {Archaeo | 93.36 | |
| d1xxxa1 | 296 | Dihydrodipicolinate synthase {Mycobacterium tuberc | 93.36 | |
| d1w25a1 | 139 | Response regulator PleD, receiver domain {Caulobac | 93.25 | |
| d1o5ka_ | 295 | Dihydrodipicolinate synthase {Thermotoga maritima | 93.18 | |
| d1zh2a1 | 119 | Transcriptional regulatory protein KdpE, N-termina | 93.14 | |
| d1dbwa_ | 123 | Transcriptional regulatory protein FixJ, receiver | 93.12 | |
| d1gtea2 | 312 | Dihydropyrimidine dehydrogenase, domain 4 {Pig (Su | 93.08 | |
| d2a6na1 | 292 | Dihydrodipicolinate synthase {Escherichia coli [Ta | 93.03 | |
| d1dcfa_ | 134 | Receiver domain of the ethylene receptor {Thale cr | 93.03 | |
| d2cu0a1 | 368 | Inosine monophosphate dehydrogenase (IMPDH) {Pyroc | 92.93 | |
| d1ys7a2 | 121 | Transcriptional regulatory protein PrrA, N-termina | 92.84 | |
| d1qkka_ | 140 | Transcriptional regulatory protein DctD, receiver | 92.81 | |
| d1kgsa2 | 122 | PhoB receiver domain {Thermotoga maritima [TaxId: | 92.64 | |
| d1zgza1 | 120 | TorCAD operon transcriptional regulator TorD, N-te | 92.61 | |
| d1geqa_ | 248 | Trp synthase alpha-subunit {Archaeon Pyrococcus fu | 92.15 | |
| d1qopa_ | 267 | Trp synthase alpha-subunit {Salmonella typhimurium | 91.95 | |
| d1a04a2 | 138 | Nitrate/nitrite response regulator (NarL), receive | 91.74 | |
| d1q45a_ | 380 | 12-oxophytodienoate reductase (OPR, OYE homolog) { | 91.7 | |
| d1muma_ | 289 | 2-methylisocitrate lyase {Escherichia coli [TaxId: | 91.6 | |
| d1km4a_ | 212 | Orotidine 5'-monophosphate decarboxylase (OMP deca | 91.5 | |
| d1pvna1 | 362 | Inosine monophosphate dehydrogenase (IMPDH) {Tritr | 91.44 | |
| d1hl2a_ | 295 | N-acetylneuraminate lyase {Escherichia coli [TaxId | 91.05 | |
| d1ofda2 | 809 | Alpha subunit of glutamate synthase, central and F | 90.89 | |
| d1yxya1 | 230 | Putative N-acetylmannosamine-6-phosphate 2-epimera | 90.82 | |
| d1dz3a_ | 123 | Sporulation response regulator Spo0A {Bacillus ste | 90.58 | |
| d1s2wa_ | 275 | Phosphoenolpyruvate mutase {Blue mussel (Mytilus e | 90.53 | |
| d1k68a_ | 140 | Response regulator for cyanobacterial phytochrome | 90.39 | |
| d1muma_ | 289 | 2-methylisocitrate lyase {Escherichia coli [TaxId: | 90.16 | |
| d1f74a_ | 293 | N-acetylneuraminate lyase {Haemophilus influenzae | 90.12 | |
| d1mvoa_ | 121 | PhoP receiver domain {Bacillus subtilis [TaxId: 14 | 90.06 | |
| d1vhna_ | 305 | Putative flavin oxidoreducatase TM0096 {Thermotoga | 89.87 | |
| d1piia2 | 254 | Indole-3-glycerophosphate synthase, IPGS {Escheric | 89.84 | |
| d1k66a_ | 149 | Response regulator for cyanobacterial phytochrome | 89.72 | |
| d1dxea_ | 253 | 2-dehydro-3-deoxy-galactarate aldolase {Escherichi | 89.51 | |
| d1w25a2 | 153 | Response regulator PleD, receiver domain {Caulobac | 89.5 | |
| d1z41a1 | 337 | NADPH dehydrogenase NamA {Bacillus subtilis [TaxId | 89.37 | |
| d1a53a_ | 247 | Indole-3-glycerophosphate synthase, IPGS {Archaeon | 89.28 | |
| d1vcva1 | 226 | Deoxyribose-phosphate aldolase DeoC {Archaeon Pyro | 89.24 | |
| d2a4aa1 | 256 | Fructose-1,6-bisphosphate aldolase {Plasmodium yoe | 88.62 | |
| d1m5wa_ | 242 | Pyridoxine 5'-phosphate synthase {Escherichia coli | 88.56 | |
| d1vd6a1 | 217 | Putative glycerophosphodiester phosphodiesterase T | 88.35 | |
| d1xkya1 | 292 | Dihydrodipicolinate synthase {Bacillus anthracis [ | 88.33 | |
| d1o5ka_ | 295 | Dihydrodipicolinate synthase {Thermotoga maritima | 88.19 | |
| d1p2fa2 | 120 | Response regulator DrrB {Thermotoga maritima [TaxI | 88.05 | |
| d1trea_ | 255 | Triosephosphate isomerase {Escherichia coli [TaxId | 87.47 | |
| d1oyaa_ | 399 | Old yellow enzyme (OYE) {Lager yeast (Saccharomyce | 87.32 | |
| d1xm3a_ | 251 | Thiazole biosynthesis protein ThiG {Bacillus subti | 87.11 | |
| d1xxxa1 | 296 | Dihydrodipicolinate synthase {Mycobacterium tuberc | 86.75 | |
| d1izca_ | 299 | Macrophomate synthase {Macrophoma commelinae [TaxI | 86.67 | |
| d1eixa_ | 231 | Orotidine 5'-monophosphate decarboxylase (OMP deca | 86.49 | |
| d1yioa2 | 128 | Response regulatory protein StyR, N-terminal domai | 86.46 | |
| d1p0ka_ | 329 | Isopentenyl-diphosphate delta-isomerase {Bacillus | 86.14 | |
| d1ykwa1 | 283 | Ribulose 1,5-bisphosphate carboxylase-oxygenase {C | 85.82 | |
| d7reqb2 | 163 | Methylmalonyl-CoA mutase beta subunit, C-terminal | 85.53 | |
| d1ep3a_ | 311 | Dihydroorotate dehydrogenase {Lactococcus lactis, | 85.37 | |
| d1ujpa_ | 271 | Trp synthase alpha-subunit {Thermus thermophilus [ | 84.97 | |
| d1xi3a_ | 206 | Thiamin phosphate synthase {Archaeon (Pyrococcus f | 84.93 | |
| d1xrsb1 | 160 | D-lysine 5,6-aminomutase beta subunit KamE, C-term | 84.54 | |
| d2tpsa_ | 226 | Thiamin phosphate synthase {Bacillus subtilis [Tax | 84.53 | |
| d1vlia2 | 295 | Spore coat polysaccharide biosynthesis protein Sps | 84.3 | |
| d1w3ia_ | 293 | 2-keto-3-deoxy gluconate aldolase Eda {Sulfolobus | 83.63 | |
| d1rd5a_ | 261 | Trp synthase alpha-subunit {Maize (Zea mays) [TaxI | 83.5 | |
| d1qapa1 | 167 | Quinolinic acid phosphoribosyltransferase (Nicotin | 82.65 | |
| d2a6na1 | 292 | Dihydrodipicolinate synthase {Escherichia coli [Ta | 81.85 | |
| d1i4na_ | 251 | Indole-3-glycerophosphate synthase, IPGS {Thermoto | 80.99 | |
| d1o5xa_ | 246 | Triosephosphate isomerase {Plasmodium falciparum [ | 80.87 | |
| d1dosa_ | 358 | Fructose-bisphosphate aldolase (FBP aldolase) {Esc | 80.22 |
| >d1vrda1 c.1.5.1 (A:1-85,A:213-457) Inosine monophosphate dehydrogenase (IMPDH) {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Inosine monophosphate dehydrogenase (IMPDH) family: Inosine monophosphate dehydrogenase (IMPDH) domain: Inosine monophosphate dehydrogenase (IMPDH) species: Thermotoga maritima [TaxId: 2336]
Probab=99.95 E-value=4.7e-27 Score=216.80 Aligned_cols=198 Identities=23% Similarity=0.334 Sum_probs=155.2
Q ss_pred chhhcCCccceecCCCCCCCCcHHHHHHHHhCCCceeecCCCCCCHHHHHHHHHHHHhhcCCcEEEEeecCCCCHHHHHH
Q 020013 3 WRGMLGFEYGIVQAPLGPDISGPELVAAVANAGGLGLLRAPDWEAPDYLRDLIRKTRSLTERPFGVGVVLAFPHNENIKA 82 (332)
Q Consensus 3 ~~~~l~~~~Pii~apM~~g~s~~~la~avs~aGglG~i~~~~~~~~e~~~~~i~~~r~~~~~p~gvnl~~~~~~~~~~~~ 82 (332)
+++.|++++|||++||. ++++++++.+++++||+|+|.. +.+++...+.++++++. ..++++++-++..+.+.++.
T Consensus 30 lt~~l~~~iPIIaa~Md-tV~~~~mA~als~~GGlGvi~r--~~~~e~~~~~i~~vk~~-~~~v~~~vgv~~~~~e~~~~ 105 (330)
T d1vrda1 30 LTRQIRINIPLVSAAMD-TVTEAALAKALAREGGIGIIHK--NLTPDEQARQVSIVKKT-RLLVGAAVGTSPETMERVEK 105 (330)
T ss_dssp SSSSCEESSSEEECCCT-TTCSHHHHHHHHTTTCEEEECS--SSCHHHHHHHHHHHHTC-CBCCEEEECSSTTHHHHHHH
T ss_pred EecCcccCCCEEeCCCC-CcCCHHHHHHHHHCCCeEEeec--ccchhhhHHHHHHHhhh-ccEEEEEEecCHHHHHHHHH
Confidence 45788999999999998 7999999999999999999976 46888888888887653 45577777666666778889
Q ss_pred HHhcCCcEEEEc--cCCCcHHH---HHHHHhC--CCEE-EEecCCHHHHHHHHHcCCCEEEEecCCCCccc---------
Q 020013 83 ILSEKVAVLQVS--WGEYSEEL---VLEAHSA--GVKV-VPQVGSFDEARKAVNAGVDAIIVQGREAGGHV--------- 145 (332)
Q Consensus 83 ~~~~~~~~I~~~--~g~~~~~~---i~~~~~~--g~~v-~~~v~s~~~a~~a~~~g~D~ivv~G~eaGGh~--------- 145 (332)
+++.++|++.+. .|. +..+ ++.+++. ++++ ...|.+.+.++.+.++|+|+|.+ |...|+.+
T Consensus 106 li~agvd~ivId~A~G~-~~~~~~~ik~ik~~~~~~~viaGnV~t~~~a~~l~~~GaD~v~V-Gig~Gs~ctt~~~~G~g 183 (330)
T d1vrda1 106 LVKAGVDVIVIDTAHGH-SRRVIETLEMIKADYPDLPVVAGNVATPEGTEALIKAGADAVKV-GVGPGSICTTRVVAGVG 183 (330)
T ss_dssp HHHTTCSEEEECCSCCS-SHHHHHHHHHHHHHCTTSCEEEEEECSHHHHHHHHHTTCSEEEE-CSSCSTTCHHHHHHCCC
T ss_pred HHHCCCCEEEEecCCCC-chhHHHHHHHHHHhCCCCCEEeechhHHHHHHHHHHcCCCEEee-ccccCccccccceeccc
Confidence 999999987763 343 4444 4444442 4554 56799999999999999999998 55444321
Q ss_pred CCCCchhhhHHHHHHHhCCCCCcEEeecCcCCHHHHHHHHHcCcceeeeccccccCccCCCCHH
Q 020013 146 IGQDGLISLLPMVVDLIGDRDIPIIAAGGIVDARGYVAALSLGAQGICLGTRFVASEESYAHPE 209 (332)
Q Consensus 146 ~~~~~~~~ll~~i~~~~~~~~iPviaaGGI~~~~~v~~al~~GA~gV~~GT~fl~t~Es~~~~~ 209 (332)
.+..+.+.+++++++.+ ++|||++|||.++.++++||++|||+|+|||+|..++||+.+-.
T Consensus 184 ~p~~sai~~~~~~~~~~---~vpvIAdGGi~~~gdiakAla~GAd~Vm~Gs~fa~~~E~pg~~~ 244 (330)
T d1vrda1 184 VPQLTAVMECSEVARKY---DVPIIADGGIRYSGDIVKALAAGAESVMVGSIFAGTEEAPGETI 244 (330)
T ss_dssp CCHHHHHHHHHHHHHTT---TCCEEEESCCCSHHHHHHHHHTTCSEEEESHHHHTBTTSSSEEE
T ss_pred cccchhHHHHHHHHHhc---CceEEecCCcccCCchheeeeccCceeeecchheeecccCccEE
Confidence 12233455566666655 89999999999999999999999999999999999999987644
|
| >d1jr1a1 c.1.5.1 (A:17-112,A:233-514) Inosine monophosphate dehydrogenase (IMPDH) {Chinese hamster (Cricetulus griseus) [TaxId: 10029]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Inosine monophosphate dehydrogenase (IMPDH) family: Inosine monophosphate dehydrogenase (IMPDH) domain: Inosine monophosphate dehydrogenase (IMPDH) species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]
Probab=99.94 E-value=1.4e-25 Score=210.07 Aligned_cols=202 Identities=19% Similarity=0.291 Sum_probs=153.3
Q ss_pred chhhcCCccceecCCCCCCCCcHHHHHHHHhCCCceeecCCCCCCHHHHHHHHHHHHhhcCCcEE-----------EEee
Q 020013 3 WRGMLGFEYGIVQAPLGPDISGPELVAAVANAGGLGLLRAPDWEAPDYLRDLIRKTRSLTERPFG-----------VGVV 71 (332)
Q Consensus 3 ~~~~l~~~~Pii~apM~~g~s~~~la~avs~aGglG~i~~~~~~~~e~~~~~i~~~r~~~~~p~g-----------vnl~ 71 (332)
|++.+++++|||++||. +++++++|++++++||+|+|.. +.++|...+.+++++...+.|+. +.+-
T Consensus 39 lt~~~~l~iPIIsApMd-tVt~~~mA~als~~GGLGvLhr--~~~~e~~~~ev~~v~~~~~~p~~~~~~~~~l~v~aavg 115 (378)
T d1jr1a1 39 LTKKITLKTPLVSSPMD-TVTEAGMAIAMALTGGIGFIHH--NCTPEFQANEVRKVKKYEQYPLASKDAKKQLLCGAAIG 115 (378)
T ss_dssp SSSSCEESSCEEECCCT-TTCSHHHHHHHHHHTCEEEECC--SSCHHHHHHHHHHHHTSCCCTTCCBCTTSCBCCEEEEC
T ss_pred EECCccCCCCEEECCCC-CcCCHHHHHHHHHCCCeeEEcC--CCCHHHHHHHHheehhhhhCcccccccccCEEEEEEec
Confidence 45678899999999998 7999999999999999999985 57999989999999877655543 2332
Q ss_pred cCCCCHHHHHHHHhcCCcEEEEccCC-CcH---HHHHHHHhC--CCEE-EEecCCHHHHHHHHHcCCCEEEEecCCCCcc
Q 020013 72 LAFPHNENIKAILSEKVAVLQVSWGE-YSE---ELVLEAHSA--GVKV-VPQVGSFDEARKAVNAGVDAIIVQGREAGGH 144 (332)
Q Consensus 72 ~~~~~~~~~~~~~~~~~~~I~~~~g~-~~~---~~i~~~~~~--g~~v-~~~v~s~~~a~~a~~~g~D~ivv~G~eaGGh 144 (332)
....+....+.+.+.+++++.+.... ... +.++.+++. .+++ ...|.+.+.++.+.++|+|+|++.+.++++|
T Consensus 116 ~~~~~~~~~~~l~~agv~vi~id~a~g~~~~~~~~i~~ik~~~~~~~iIaGnVaT~e~a~~L~~aGAD~VkVGiG~Gs~c 195 (378)
T d1jr1a1 116 THEDDKYRLDLLALAGVDVVVLDSSQGNSIFQINMIKYMKEKYPNLQVIGGNVVTAAQAKNLIDAGVDALRVGMGCGSIC 195 (378)
T ss_dssp SSTHHHHHHHHHHHHTCCEEEECCSSCCSHHHHHHHHHHHHHSTTCEEEEEEECSHHHHHHHHHHTCSEEEECSSCSTTB
T ss_pred cCHHHHHHHHHHHhhccceEeeeccCccchhhHHHHHHHHHHCCCCceeecccccHHHHHHHHHhCCCEEeecccccccc
Confidence 33223455777888999999885321 222 344555543 4554 4789999999999999999999977776666
Q ss_pred cC----C-CCchhhhHHHHHHHhCCCCCcEEeecCcCCHHHHHHHHHcCcceeeeccccccCccCCCC
Q 020013 145 VI----G-QDGLISLLPMVVDLIGDRDIPIIAAGGIVDARGYVAALSLGAQGICLGTRFVASEESYAH 207 (332)
Q Consensus 145 ~~----~-~~~~~~ll~~i~~~~~~~~iPviaaGGI~~~~~v~~al~~GA~gV~~GT~fl~t~Es~~~ 207 (332)
+. + ..+.+..+..+.+.....++|||++|||.++.|+++||++|||+|+|||.|..++||+..
T Consensus 196 tTr~~tGvG~pq~sai~~~~~~a~~~~vpIIADGGi~~~gdiakAla~GAd~VMmGs~fAgt~EspG~ 263 (378)
T d1jr1a1 196 ITQEVLACGRPQATAVYKVSEYARRFGVPVIADGGIQNVGHIAKALALGASTVMMGSLLAATTEAPGE 263 (378)
T ss_dssp CHHHHHCCCCCHHHHHHHHHHHHGGGTCCEEEESCCCSHHHHHHHHHTTCSEEEESTTTTTBTTSSSC
T ss_pred ccccccccCcccchhhhHHHHhhcccCCceecccccccCCceeeEEEeecceeeecceeeeeecccCc
Confidence 51 1 123344444443333223799999999999999999999999999999999999999874
|
| >d1zfja1 c.1.5.1 (A:2-94,A:221-492) Inosine monophosphate dehydrogenase (IMPDH) {Streptococcus pyogenes [TaxId: 1314]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Inosine monophosphate dehydrogenase (IMPDH) family: Inosine monophosphate dehydrogenase (IMPDH) domain: Inosine monophosphate dehydrogenase (IMPDH) species: Streptococcus pyogenes [TaxId: 1314]
Probab=99.88 E-value=3e-21 Score=179.37 Aligned_cols=200 Identities=21% Similarity=0.305 Sum_probs=150.0
Q ss_pred chhhcCCccceecCCCCCCCCcHHHHHHHHhCCCceeecCCCCCCHHHHHHHHHHHHhhcC-CcEEEEeecCCCCHHHHH
Q 020013 3 WRGMLGFEYGIVQAPLGPDISGPELVAAVANAGGLGLLRAPDWEAPDYLRDLIRKTRSLTE-RPFGVGVVLAFPHNENIK 81 (332)
Q Consensus 3 ~~~~l~~~~Pii~apM~~g~s~~~la~avs~aGglG~i~~~~~~~~e~~~~~i~~~r~~~~-~p~gvnl~~~~~~~~~~~ 81 (332)
|++.+.++.|||++||. .+++++++.+++++||+|+|.. +.++++..+.+.+.++... ..+++.+-++..+.+.++
T Consensus 37 it~~~~~~iPIIsA~MD-tV~~~~mA~~ls~~Gglgvlhr--~~~~~e~~~~~~~~~~~~~~~~v~aavGv~~~~~er~~ 113 (365)
T d1zfja1 37 LADNLTLNIPIITAAMD-TVTGSKMAIAIARAGGLGVIHK--NMSITEQAEEVRKVKRSEGRLLVAAAVGVTSDTFERAE 113 (365)
T ss_dssp EETTEEESSSEEECCCT-TTCSHHHHHHHHHTTCEEEECC--SSCHHHHHHHHHHHHHHTSCBCCEEEECSSTTHHHHHH
T ss_pred eeCCcccCCCEEECCCC-CcCCHHHHHHHHHCCCceEEcC--ccCHHHHHHHhhhhhhccCceEEEEEeccCchHHHHHH
Confidence 34677889999999998 7999999999999999999986 3577777777776665433 345666555555567788
Q ss_pred HHHhcCCcEEEEc--cCCCcHH---HHHHHHh---CCCEEEEecCCHHHHHHHHHcCCCEEEEecCCCCcccCC------
Q 020013 82 AILSEKVAVLQVS--WGEYSEE---LVLEAHS---AGVKVVPQVGSFDEARKAVNAGVDAIIVQGREAGGHVIG------ 147 (332)
Q Consensus 82 ~~~~~~~~~I~~~--~g~~~~~---~i~~~~~---~g~~v~~~v~s~~~a~~a~~~g~D~ivv~G~eaGGh~~~------ 147 (332)
.+.+.++|+|.+. .|. ... .++.+++ ....+...|.|.+.++.+.++|+|+|.| |...|+.+..
T Consensus 114 ~l~~agvd~ivID~A~G~-s~~~~~~i~~ik~~~~~~~iIaGNV~T~e~a~~L~~aGaD~VkV-GiG~Gs~CTTr~~tGv 191 (365)
T d1zfja1 114 ALFEAGADAIVIDTAHGH-SAGVLRKIAEIRAHFPNRTLIAGNIATAEGARALYDAGVDVVKV-GIGPGSICTTRVVAGV 191 (365)
T ss_dssp HHHHHTCSEEEECCSCTT-CHHHHHHHHHHHHHCSSSCEEEEEECSHHHHHHHHHTTCSEEEE-CSSCCTTBCHHHHTCC
T ss_pred HHHHcCCCEEEEECCccc-ccchhHHHHHHHhhCCCcceeecccccHHHHHHHHhcCCceEEe-eecccccccCcceeee
Confidence 8899999998774 232 333 4444544 2345668899999999999999999988 4433332211
Q ss_pred CCchhhhHHHHHHHhCCCCCcEEeecCcCCHHHHHHHHHcCcceeeeccccccCccCCCC
Q 020013 148 QDGLISLLPMVVDLIGDRDIPIIAAGGIVDARGYVAALSLGAQGICLGTRFVASEESYAH 207 (332)
Q Consensus 148 ~~~~~~ll~~i~~~~~~~~iPviaaGGI~~~~~v~~al~~GA~gV~~GT~fl~t~Es~~~ 207 (332)
..+.+..+..+.++....++|||++|||.++.|+.+||++|||+|+||+.|..++||+..
T Consensus 192 GvPq~sai~~~~~~~~~~~~~iIADGGi~~~GDi~KAla~GAd~VMlG~~lAg~~EsPG~ 251 (365)
T d1zfja1 192 GVPQVTAIYDAAAVAREYGKTIIADGGIKYSGDIVKALAAGGNAVMLGSMFAGTDEAPGE 251 (365)
T ss_dssp CCCHHHHHHHHHHHHHHTTCEEEEESCCCSHHHHHHHHHTTCSEEEESTTTTTBSSCCCC
T ss_pred eccchhHHHHHHHHHHhCCceEEecCCcCcchhhhhhhhccCCEEEecchhccccCCCCc
Confidence 124455555554443333799999999999999999999999999999999999999865
|
| >d1eepa_ c.1.5.1 (A:) Inosine monophosphate dehydrogenase (IMPDH) {Lyme disease spirochete (Borrelia burgdorferi) [TaxId: 139]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Inosine monophosphate dehydrogenase (IMPDH) family: Inosine monophosphate dehydrogenase (IMPDH) domain: Inosine monophosphate dehydrogenase (IMPDH) species: Lyme disease spirochete (Borrelia burgdorferi) [TaxId: 139]
Probab=99.85 E-value=6.8e-20 Score=172.09 Aligned_cols=199 Identities=20% Similarity=0.350 Sum_probs=146.7
Q ss_pred chhhcCCccceecCCCCCCCCcHHHHHHHHhCCCceeecCCCCCCHHHHHHHHHHHHhhc-CC-----------------
Q 020013 3 WRGMLGFEYGIVQAPLGPDISGPELVAAVANAGGLGLLRAPDWEAPDYLRDLIRKTRSLT-ER----------------- 64 (332)
Q Consensus 3 ~~~~l~~~~Pii~apM~~g~s~~~la~avs~aGglG~i~~~~~~~~e~~~~~i~~~r~~~-~~----------------- 64 (332)
+++.+.++.|||++||. .++++++|.++++.||+|+|.. .++.|...+.+++++... ..
T Consensus 33 ~t~~~~l~iPIisA~MD-tVt~~~mAi~ma~~GGlgVihr--~~~ie~q~~~v~~Vk~~~~~~~~~~~~d~~~~~~~~~t 109 (388)
T d1eepa_ 33 LTKNISLNIPFLSSAMD-TVTESQMAIAIAKEGGIGIIHK--NMSIEAQRKEIEKVKTYKFQKTINTNGDTNEQKPEIFT 109 (388)
T ss_dssp SSSSCEESSSEEECCCT-TTCSHHHHHHHHHHTSEEEECS--SSCHHHHHHHHHHHHTCC--------------------
T ss_pred eeCCEecCCCEEecCCC-CCCCHHHHHHHHHCCCEEEEeC--CCCHHHHHHHHHHhhhccccccccccCccccccchhhh
Confidence 34556678899999998 7999999999999999999975 468887777777775321 00
Q ss_pred -------------------------------cEEEEeecCCCCHHHHHHHHhcCCcEEEEc--cCCCcH---HHHHHHHh
Q 020013 65 -------------------------------PFGVGVVLAFPHNENIKAILSEKVAVLQVS--WGEYSE---ELVLEAHS 108 (332)
Q Consensus 65 -------------------------------p~gvnl~~~~~~~~~~~~~~~~~~~~I~~~--~g~~~~---~~i~~~~~ 108 (332)
.+++.+-......+....+.+.++|++.+. .|. .. +.++.+++
T Consensus 110 ~~~~~~~~~a~~d~~~~~~~p~~~~d~~~~l~vgaAvg~~~~~~~ra~~L~~aG~D~ivID~AhG~-s~~~~~~i~~ik~ 188 (388)
T d1eepa_ 110 AKQHLEKSDAYKNAEHKEDFPNACKDLNNKLRVGAAVSIDIDTIERVEELVKAHVDILVIDSAHGH-STRIIELIKKIKT 188 (388)
T ss_dssp ------------------CCTTCCBCTTSCBCCEEEECSCTTHHHHHHHHHHTTCSEEEECCSCCS-SHHHHHHHHHHHH
T ss_pred hhhhhhhhHHHHhHHHHhhhhHHHhhhhccchhhhccCCCHHHHHHHHHHHhhccceeeeeccccc-hHHHHHHHHHHHH
Confidence 112222222333567788889999998873 242 33 44455554
Q ss_pred C--CCEEE-EecCCHHHHHHHHHcCCCEEEEecCCCCccc------CCCCchhhhHHHHHHHhCCCCCcEEeecCcCCHH
Q 020013 109 A--GVKVV-PQVGSFDEARKAVNAGVDAIIVQGREAGGHV------IGQDGLISLLPMVVDLIGDRDIPIIAAGGIVDAR 179 (332)
Q Consensus 109 ~--g~~v~-~~v~s~~~a~~a~~~g~D~ivv~G~eaGGh~------~~~~~~~~ll~~i~~~~~~~~iPviaaGGI~~~~ 179 (332)
. +++|+ ..|.|.+.++.+.++|+|+|.| |...|+-+ +-..+.+..+..+.+......+|||++|||.++.
T Consensus 189 ~~~~v~vIaGNV~T~e~a~~L~~~GaD~VkV-GiGpGs~CtTr~~~GvG~pq~sai~~~~~~~~~~~vpiIADGGi~~~G 267 (388)
T d1eepa_ 189 KYPNLDLIAGNIVTKEAALDLISVGADCLKV-GIGPGSICTTRIVAGVGVPQITAICDVYEACNNTNICIIADGGIRFSG 267 (388)
T ss_dssp HCTTCEEEEEEECSHHHHHHHHTTTCSEEEE-CSSCSTTSHHHHHHCCCCCHHHHHHHHHHHHTTSSCEEEEESCCCSHH
T ss_pred HCCCCceeeccccCHHHHHHHHhcCCCeeee-ccccccccccccccccCcchHHHHHHHHHHhccCCceEEeccccCcCC
Confidence 2 56655 6799999999999999999998 33223221 1113456667777766655579999999999999
Q ss_pred HHHHHHHcCcceeeeccccccCccCCC
Q 020013 180 GYVAALSLGAQGICLGTRFVASEESYA 206 (332)
Q Consensus 180 ~v~~al~~GA~gV~~GT~fl~t~Es~~ 206 (332)
|+++||++|||.|+||+.|..+.||+.
T Consensus 268 di~KAla~GAd~VMlG~~lAg~~Espg 294 (388)
T d1eepa_ 268 DVVKAIAAGADSVMIGNLFAGTKESPS 294 (388)
T ss_dssp HHHHHHHHTCSEEEECHHHHTBTTSSS
T ss_pred ceeeeEEeccceeecchhhhcccCCCc
Confidence 999999999999999999999999875
|
| >d1pvna1 c.1.5.1 (A:2-99,A:231-494) Inosine monophosphate dehydrogenase (IMPDH) {Tritrichomonas foetus [TaxId: 5724]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Inosine monophosphate dehydrogenase (IMPDH) family: Inosine monophosphate dehydrogenase (IMPDH) domain: Inosine monophosphate dehydrogenase (IMPDH) species: Tritrichomonas foetus [TaxId: 5724]
Probab=99.75 E-value=5.4e-17 Score=150.77 Aligned_cols=193 Identities=25% Similarity=0.329 Sum_probs=139.5
Q ss_pred CCccceecCCCCCCCCcHHHHHHHHhCCCceeecCCCCCCHHHHHHHHHHHHhhcCCcEEEEeecCCCCHHHHHHHHhcC
Q 020013 8 GFEYGIVQAPLGPDISGPELVAAVANAGGLGLLRAPDWEAPDYLRDLIRKTRSLTERPFGVGVVLAFPHNENIKAILSEK 87 (332)
Q Consensus 8 ~~~~Pii~apM~~g~s~~~la~avs~aGglG~i~~~~~~~~e~~~~~i~~~r~~~~~p~gvnl~~~~~~~~~~~~~~~~~ 87 (332)
.++.|||.+||. .+++++++.++++.|++|+|.- +.++|+..+.+.+.+... ..++... ......+.++.+.+.+
T Consensus 48 ~l~iPIIsAnMD-TVt~~~mA~~la~~GglgvihR--~~~ie~~~~~~~~~~~~~-~~~~~~~-~~~~~~~~~~~L~~ag 122 (362)
T d1pvna1 48 NLKIPLVSAIMQ-SVSGEKMAIALAREGGISFIFG--SQSIESQAAMVHAVKNFR-YLVGAGI-NTRDFRERVPALVEAG 122 (362)
T ss_dssp EESSSEEECSCT-TTCSHHHHHHHHHTTCEEEECC--SSCHHHHHHHHHHHHTCC-CCCEEEE-CSSSHHHHHHHHHHHT
T ss_pred ccCCcEEecCCC-CcCCHHHHHHHHHCCCEEEEee--cCCHHHHHHHhhhhhhcc-ccccccc-chhhhHHHHHHHhhcC
Confidence 356899999997 7999999999999999999974 578887777776665431 1222222 2233356778888999
Q ss_pred CcEEEEc--cCCCcH---HHHHHHHh---CCCEE-EEecCCHHHHHHHHHcCCCEEEEecCCCCcccC-----C-CCchh
Q 020013 88 VAVLQVS--WGEYSE---ELVLEAHS---AGVKV-VPQVGSFDEARKAVNAGVDAIIVQGREAGGHVI-----G-QDGLI 152 (332)
Q Consensus 88 ~~~I~~~--~g~~~~---~~i~~~~~---~g~~v-~~~v~s~~~a~~a~~~g~D~ivv~G~eaGGh~~-----~-~~~~~ 152 (332)
++++.+. .| ... +.++.+++ ..++| ...|.|.+.++.+.++|+|+|.| |...|..+. + ..+.+
T Consensus 123 ~d~i~IDvAhG-~~~~v~~~i~~ir~~~~~~~~IiAGNVaT~e~~~~L~~aGaD~vkV-GIG~Gs~CTTr~~tGvG~Pq~ 200 (362)
T d1pvna1 123 ADVLCIDSSDG-FSEWQKITIGWIREKYGDKVKVGAGNIVDGEGFRYLADAGADFIKI-GIGGGSICITREQKGIGRGQA 200 (362)
T ss_dssp CSEEEECCSCC-CBHHHHHHHHHHHHHHGGGSCEEEEEECSHHHHHHHHHHTCSEEEE-CSSCSTTBCHHHHTCBCCCHH
T ss_pred ceEEeechhcc-chhHHHHHHHHHHHhhccceeeecccccCHHHHHHHHHhCCcEEEe-cccccccccchhhhccCCchH
Confidence 9998874 23 233 34444433 23444 57899999999999999999988 433344331 1 13455
Q ss_pred hhHHHHHHHhC------CCCCcEEeecCcCCHHHHHHHHHcCcceeeeccccccCccCCCC
Q 020013 153 SLLPMVVDLIG------DRDIPIIAAGGIVDARGYVAALSLGAQGICLGTRFVASEESYAH 207 (332)
Q Consensus 153 ~ll~~i~~~~~------~~~iPviaaGGI~~~~~v~~al~~GA~gV~~GT~fl~t~Es~~~ 207 (332)
..+-+++++.. ..++|||+.|||.++.|+.+||++|||.|+||+.|..+.||+..
T Consensus 201 sAv~e~a~~~~~~~~~~~~~v~iiaDGGi~~~gdi~KAla~GAd~VM~G~~lAg~~Espg~ 261 (362)
T d1pvna1 201 TAVIDVVAERNKYFEETGIYIPVCSDGGIVYDYHMTLALAMGADFIMLGRYFARFEESPTR 261 (362)
T ss_dssp HHHHHHHHHHHHHHHHHSEECCEEEESCCCSHHHHHHHHHTTCSEEEESHHHHTBTTSSSC
T ss_pred HHHHHHHHHHHHhhhhcccCCceeeccccCcccceeEEEEEeccceeehhhhhcccccCCc
Confidence 55555544321 12599999999999999999999999999999999999999864
|
| >d2cu0a1 c.1.5.1 (A:3-96,A:207-480) Inosine monophosphate dehydrogenase (IMPDH) {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Inosine monophosphate dehydrogenase (IMPDH) family: Inosine monophosphate dehydrogenase (IMPDH) domain: Inosine monophosphate dehydrogenase (IMPDH) species: Pyrococcus horikoshii [TaxId: 53953]
Probab=99.74 E-value=6.1e-17 Score=150.57 Aligned_cols=196 Identities=18% Similarity=0.227 Sum_probs=139.8
Q ss_pred hhhcCCccceecCCCCCCCCcHHHHHHHHhCCCceeecCCCCCCHHHHHHHHHHHHhhcC---------CcEEEEeecCC
Q 020013 4 RGMLGFEYGIVQAPLGPDISGPELVAAVANAGGLGLLRAPDWEAPDYLRDLIRKTRSLTE---------RPFGVGVVLAF 74 (332)
Q Consensus 4 ~~~l~~~~Pii~apM~~g~s~~~la~avs~aGglG~i~~~~~~~~e~~~~~i~~~r~~~~---------~p~gvnl~~~~ 74 (332)
++.+.++.|||.+||. .+++++++.++++.||+|+|.- +.+++...+.+.+++.... ..+.+......
T Consensus 39 ~~~~~l~iPIiss~MD-tV~~~~mA~~la~~Gglgvlhr--~~~~e~~~~~v~~v~~~e~~~~~~~d~~~~~~v~~~~~~ 115 (368)
T d2cu0a1 39 TPNVKLNIPILSAAMD-TVTEWEMAVAMAREGGLGVIHR--NMGIEEQVEQVKRVKRAEKYKNAVRDENGELLVAAAVSP 115 (368)
T ss_dssp ETTEEESSSEEECCCT-TTCSHHHHHHHHHTTCEEEECS--SSCHHHHHHHHHHHHTCCCCTTCCBCTTSCBCCEEEECT
T ss_pred eCCcccCCCEEeCCCC-CcCCHHHHHHHHHCCCeeEecc--cCCHHHHHHHHHhhhhhhhccccccccCccEEEEeccCh
Confidence 3455677899999998 7999999999999999999985 4688877777777764321 12223333333
Q ss_pred CCHHHHHHHHhcCCcEEEEc--cCCCcHHH---HHHHHh-CCCEEE-EecCCHHHHHHHHHcCCCEEEEecCCCCcccC-
Q 020013 75 PHNENIKAILSEKVAVLQVS--WGEYSEEL---VLEAHS-AGVKVV-PQVGSFDEARKAVNAGVDAIIVQGREAGGHVI- 146 (332)
Q Consensus 75 ~~~~~~~~~~~~~~~~I~~~--~g~~~~~~---i~~~~~-~g~~v~-~~v~s~~~a~~a~~~g~D~ivv~G~eaGGh~~- 146 (332)
.+.+....+.+.++|+|.+. .|. .... ++.+++ ..++++ ..|.+.+.++. ..|+|+|.+ |...|..+.
T Consensus 116 ~~~~r~~~l~~aGvd~ivID~A~Gh-~~~~i~~lK~ir~~~~~~vIaGNVaT~e~~~~--l~gaD~VkV-GIG~Gs~CTT 191 (368)
T d2cu0a1 116 FDIKRAIELDKAGVDVIVVDTAHAH-NLKAIKSMKEMRQKVDADFIVGNIANPKAVDD--LTFADAVKV-GIGPGSICTT 191 (368)
T ss_dssp TCHHHHHHHHHTTCSEEEEECSCCC-CHHHHHHHHHHHHTCCSEEEEEEECCHHHHTT--CTTSSEEEE-CSSCSTTBCH
T ss_pred HHHHHHHHHHHcCCCEEEecCcccc-hhhhhhhhhhhhhhcccceeeccccCHHHHHh--hhcCcceee-cccCcccccc
Confidence 44566778889999998764 232 4433 344443 345554 56888877654 369999987 554343221
Q ss_pred -----CCCchhhhHHHHHHHhCCCCCcEEeecCcCCHHHHHHHHHcCcceeeeccccccCccCCC
Q 020013 147 -----GQDGLISLLPMVVDLIGDRDIPIIAAGGIVDARGYVAALSLGAQGICLGTRFVASEESYA 206 (332)
Q Consensus 147 -----~~~~~~~ll~~i~~~~~~~~iPviaaGGI~~~~~v~~al~~GA~gV~~GT~fl~t~Es~~ 206 (332)
-..+.+..+.++.+.....++|||++|||.++.|+.+||++|||.|++|+.|..+.||+.
T Consensus 192 r~~tGvG~Pq~sAi~e~~~~~~~~~~~iiADGGi~~~Gdi~KAla~GAd~VMlG~~lAg~~Espg 256 (368)
T d2cu0a1 192 RIVAGVGVPQITAVAMVADRAQEYGLYVIADGGIRYSGDIVKAIAAGADAVMLGNLLAGTKEAPG 256 (368)
T ss_dssp HHHTCCCCCHHHHHHHHHHHHHHHTCEEEEESCCCSHHHHHHHHHTTCSEEEESTTTTTBTTCCS
T ss_pred hhhcccccchHHHHHHHHHHHhccCCeeEecCCCCcCChhheeeeeccceeeccchhccccccCC
Confidence 113456666665554333379999999999999999999999999999999999999876
|
| >d1y0ea_ c.1.2.5 (A:) Putative N-acetylmannosamine-6-phosphate 2-epimerase NanE {Staphylococcus aureus [TaxId: 1280]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Ribulose-phoshate binding barrel family: NanE-like domain: Putative N-acetylmannosamine-6-phosphate 2-epimerase NanE species: Staphylococcus aureus [TaxId: 1280]
Probab=99.62 E-value=5.3e-15 Score=127.81 Aligned_cols=178 Identities=19% Similarity=0.287 Sum_probs=115.1
Q ss_pred ceecCCCCCCCCcHHHHHHHHhCCCceeecCCCCCCHHHHHHHHHHHHhhcCCcEEEEe--------ecCCCCHHHHHHH
Q 020013 12 GIVQAPLGPDISGPELVAAVANAGGLGLLRAPDWEAPDYLRDLIRKTRSLTERPFGVGV--------VLAFPHNENIKAI 83 (332)
Q Consensus 12 Pii~apM~~g~s~~~la~avs~aGglG~i~~~~~~~~e~~~~~i~~~r~~~~~p~gvnl--------~~~~~~~~~~~~~ 83 (332)
|++++||..+-..++++.+...+|+.++.. .+++. ++.+|+..+.|.-.-. .......+..+..
T Consensus 13 ~~~~~Pm~~~~~~a~~A~aa~~~Ga~~i~~----~~~~~----~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (222)
T d1y0ea_ 13 ALPDEPLHSSFIMSKMALAAYEGGAVGIRA----NTKED----ILAIKETVDLPVIGIVKRDYDHSDVFITATSKEVDEL 84 (222)
T ss_dssp CCTTSTTCCHHHHHHHHHHHHHHTCSEEEE----ESHHH----HHHHHHHCCSCEEEECBCCCTTCCCCBSCSHHHHHHH
T ss_pred cCCCCCCCCcHHHHHHHHHHHHCCCeEEec----CCHHH----HHHHHHhcCCccceeeccCCcchHHhhcccHHHHHhH
Confidence 445566642112233444444446666643 24444 3445555555532110 1111235566777
Q ss_pred HhcCCcEEEEccC------CCcHHHHHHHHhC--CCEEEEecCCHHHHHHHHHcCCCEEEEecCCCCcccCCC---Cchh
Q 020013 84 LSEKVAVLQVSWG------EYSEELVLEAHSA--GVKVVPQVGSFDEARKAVNAGVDAIIVQGREAGGHVIGQ---DGLI 152 (332)
Q Consensus 84 ~~~~~~~I~~~~g------~~~~~~i~~~~~~--g~~v~~~v~s~~~a~~a~~~g~D~ivv~G~eaGGh~~~~---~~~~ 152 (332)
.+.+++.|.+... ....++++.+++. +..+...+.+.++++.+.+.|+|+|.+.+...++...+. ...+
T Consensus 85 ~~agad~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~t~~~a~~~~~~g~d~i~~~~~~~~~~~~~~~~~~~~~ 164 (222)
T d1y0ea_ 85 IESQCEVIALDATLQQRPKETLDELVSYIRTHAPNVEIMADIATVEEAKNAARLGFDYIGTTLHGYTSYTQGQLLYQNDF 164 (222)
T ss_dssp HHHTCSEEEEECSCSCCSSSCHHHHHHHHHHHCTTSEEEEECSSHHHHHHHHHTTCSEEECTTTTSSTTSTTCCTTHHHH
T ss_pred HHcCCCEEEeeccccccccchHHHHHHHHHHhCCceEEeecCCCHHHHHHHHHcCCCeEEEeccCCcccccCccchhhHH
Confidence 7889999987532 1234566666554 467778899999999999999999987544222221111 2346
Q ss_pred hhHHHHHHHhCCCCCcEEeecCcCCHHHHHHHHHcCcceeeecccccc
Q 020013 153 SLLPMVVDLIGDRDIPIIAAGGIVDARGYVAALSLGAQGICLGTRFVA 200 (332)
Q Consensus 153 ~ll~~i~~~~~~~~iPviaaGGI~~~~~v~~al~~GA~gV~~GT~fl~ 200 (332)
.++.++++.+ ++||+++|||.|++|+.+++++|||||++||+++.
T Consensus 165 ~~i~~~~~~~---~iPVia~GGI~t~~d~~~~~~~GAdgV~iGsAi~r 209 (222)
T d1y0ea_ 165 QFLKDVLQSV---DAKVIAEGNVITPDMYKRVMDLGVHCSVVGGAITR 209 (222)
T ss_dssp HHHHHHHHHC---CSEEEEESSCCSHHHHHHHHHTTCSEEEECHHHHC
T ss_pred HHHHHHHhcC---CCcEEEeCCCCCHHHHHHHHHcCCCEEEEchhhcC
Confidence 7788887776 89999999999999999999999999999999863
|
| >d1yxya1 c.1.2.5 (A:4-233) Putative N-acetylmannosamine-6-phosphate 2-epimerase NanE {Streptococcus pyogenes [TaxId: 1314]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Ribulose-phoshate binding barrel family: NanE-like domain: Putative N-acetylmannosamine-6-phosphate 2-epimerase NanE species: Streptococcus pyogenes [TaxId: 1314]
Probab=99.58 E-value=6.7e-14 Score=121.56 Aligned_cols=163 Identities=18% Similarity=0.206 Sum_probs=113.1
Q ss_pred HHHHHHHhCCCceeecCCCCCCHHHHHHHHHHHHhhcCCcEEEEeecC--------CCCHHHHHHHHhcCCcEEEEccCC
Q 020013 26 ELVAAVANAGGLGLLRAPDWEAPDYLRDLIRKTRSLTERPFGVGVVLA--------FPHNENIKAILSEKVAVLQVSWGE 97 (332)
Q Consensus 26 ~la~avs~aGglG~i~~~~~~~~e~~~~~i~~~r~~~~~p~gvnl~~~--------~~~~~~~~~~~~~~~~~I~~~~g~ 97 (332)
+++.+..++|+.++. . .+++. ++++|+.++.|........ .............++|.+.+....
T Consensus 37 ~~A~a~~~~Ga~~i~-~---~~~~~----~~~ir~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gad~i~~~~~~ 108 (230)
T d1yxya1 37 LMAKAAQEAGAVGIR-A---NSVRD----IKEIQAITDLPIIGIIKKDYPPQEPFITATMTEVDQLAALNIAVIAMDCTK 108 (230)
T ss_dssp HHHHHHHHHTCSEEE-E---ESHHH----HHHHHTTCCSCEEEECBCCCTTSCCCBSCSHHHHHHHHTTTCSEEEEECCS
T ss_pred HHHHHHHHCCCeEEE-e---cChhh----HHHHHhhhhcchhhhhcccCCcceeeechhHHHHHHHHhcCCCEEEEeccc
Confidence 455666555554442 2 23443 5567777777754332211 123456777788899988775321
Q ss_pred -------CcHHHHHHHHh--CCCEEEEecCCHHHHHHHHHcCCCEEEEecCCCCcccCCCCchhhhHHHHHHHhCCCCCc
Q 020013 98 -------YSEELVLEAHS--AGVKVVPQVGSFDEARKAVNAGVDAIIVQGREAGGHVIGQDGLISLLPMVVDLIGDRDIP 168 (332)
Q Consensus 98 -------~~~~~i~~~~~--~g~~v~~~v~s~~~a~~a~~~g~D~ivv~G~eaGGh~~~~~~~~~ll~~i~~~~~~~~iP 168 (332)
...+.++.++. .+..++..++|.++++.+.++|+|+|.+.+.+.+++..........+..+.... ++|
T Consensus 109 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~v~t~~~a~~a~~~Gad~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~ip 185 (230)
T d1yxya1 109 RDRHDGLDIASFIRQVKEKYPNQLLMADISTFDEGLVAHQAGIDFVGTTLSGYTPYSRQEAGPDVALIEALCKA---GIA 185 (230)
T ss_dssp SCCTTCCCHHHHHHHHHHHCTTCEEEEECSSHHHHHHHHHTTCSEEECTTTTSSTTSCCSSSCCHHHHHHHHHT---TCC
T ss_pred ccccchhhHHHHHHHHHhcCCCceEecCCCCHHHHHHHHhcCCCEEEeecccccccccccchHHHHHHHHHhcC---CCe
Confidence 12345555544 378888999999999999999999999988877766533323333344555545 799
Q ss_pred EEeecCcCCHHHHHHHHHcCcceeeeccccc
Q 020013 169 IIAAGGIVDARGYVAALSLGAQGICLGTRFV 199 (332)
Q Consensus 169 viaaGGI~~~~~v~~al~~GA~gV~~GT~fl 199 (332)
||++|||+|++|+.+++++|||+|++||++.
T Consensus 186 via~GGI~t~~d~~~al~~GAd~V~vGsAi~ 216 (230)
T d1yxya1 186 VIAEGKIHSPEEAKKINDLGVAGIVVGGAIT 216 (230)
T ss_dssp EEEESCCCSHHHHHHHHTTCCSEEEECHHHH
T ss_pred EEEeCCCCCHHHHHHHHHcCCCEEEEChhhc
Confidence 9999999999999999999999999999986
|
| >d1wa3a1 c.1.10.1 (A:2-203) KDPG aldolase {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Aldolase family: Class I aldolase domain: KDPG aldolase species: Thermotoga maritima [TaxId: 2336]
Probab=99.54 E-value=6.6e-15 Score=125.31 Aligned_cols=177 Identities=18% Similarity=0.238 Sum_probs=138.4
Q ss_pred hhhcCCccceecCCCCCCCCcHHHHHHHHhC---CCceeecCCCCCCHHHHHHHHHHHHh-h-cCCcEEEEeecCCCCHH
Q 020013 4 RGMLGFEYGIVQAPLGPDISGPELVAAVANA---GGLGLLRAPDWEAPDYLRDLIRKTRS-L-TERPFGVGVVLAFPHNE 78 (332)
Q Consensus 4 ~~~l~~~~Pii~apM~~g~s~~~la~avs~a---GglG~i~~~~~~~~e~~~~~i~~~r~-~-~~~p~gvnl~~~~~~~~ 78 (332)
.++|. +.||| |+- ...+++.+..++++ ||+.++.. .+.+|+.+ +.+++++. . .+.-+|++.+.+ .+
T Consensus 3 ~~~l~-~~~ii--pvl-r~~~~~~a~~~~~al~~~Gi~~iEi-tlr~p~a~-~~i~~l~~~~~~~~~vGaGTV~~---~~ 73 (202)
T d1wa3a1 3 EELFK-KHKIV--AVL-RANSVEEAKEKALAVFEGGVHLIEI-TFTVPDAD-TVIKELSFLKEKGAIIGAGTVTS---VE 73 (202)
T ss_dssp HHHHH-HHCEE--EEE-CCSSHHHHHHHHHHHHHTTCCEEEE-ETTSTTHH-HHHHHTHHHHHTTCEEEEESCCS---HH
T ss_pred HHHHH-hCCEE--EEE-ECCCHHHHHHHHHHHHHcCCCEEEE-ecCCccHH-HHHHHHHHhcCCCcEEEeccccc---HH
Confidence 45555 57787 775 57788888777765 89999976 36677654 45555543 2 345578877764 67
Q ss_pred HHHHHHhcCCcEEEEccCCCcHHHHHHHHhCCCEEEEecCCHHHHHHHHHcCCCEEEEecCCCCcccCCCCchhhhHHHH
Q 020013 79 NIKAILSEKVAVLQVSWGEYSEELVLEAHSAGVKVVPQVGSFDEARKAVNAGVDAIIVQGREAGGHVIGQDGLISLLPMV 158 (332)
Q Consensus 79 ~~~~~~~~~~~~I~~~~g~~~~~~i~~~~~~g~~v~~~v~s~~~a~~a~~~g~D~ivv~G~eaGGh~~~~~~~~~ll~~i 158 (332)
.++.+.+.|++++... +. .+++++.+++.++++++.+.|+.|+..+.+.|+|++.+...+..| ...++.+
T Consensus 74 ~~~~a~~aGa~fivsP-~~-~~~v~~~~~~~~i~~iPGv~TpsEi~~A~~~G~~~lK~fPa~~~G--------~~~lk~l 143 (202)
T d1wa3a1 74 QCRKAVESGAEFIVSP-HL-DEEISQFCKEKGVFYMPGVMTPTELVKAMKLGHTILKLFPGEVVG--------PQFVKAM 143 (202)
T ss_dssp HHHHHHHHTCSEEECS-SC-CHHHHHHHHHHTCEEECEECSHHHHHHHHHTTCCEEEETTHHHHH--------HHHHHHH
T ss_pred HHHHHHhhcccEEeCC-CC-cHHHHHHHHhcCCceeCCcCcHHHHHHHHHCCCCEEEecchhhcC--------HHHHHHH
Confidence 8999999999999876 43 578999999999999999999999999999999999985443332 2456666
Q ss_pred HHHhCCCCCcEEeecCcCCHHHHHHHHHcCcceeeeccccccCc
Q 020013 159 VDLIGDRDIPIIAAGGIVDARGYVAALSLGAQGICLGTRFVASE 202 (332)
Q Consensus 159 ~~~~~~~~iPviaaGGI~~~~~v~~al~~GA~gV~~GT~fl~t~ 202 (332)
...++ ++|+++.||| +.+|+.+++++|+.+|.+||.+....
T Consensus 144 ~~p~p--~i~~iptGGI-~~~n~~~~l~aga~avg~Gs~l~~~~ 184 (202)
T d1wa3a1 144 KGPFP--NVKFVPTGGV-NLDNVCEWFKAGVLAVGVGSALVKGT 184 (202)
T ss_dssp HTTCT--TCEEEEBSSC-CTTTHHHHHHHTCSCEEECHHHHCSC
T ss_pred hCccc--CCcEEeeCCC-CHHHHHHHHHCCCeEEEEchhhcCCC
Confidence 66554 7999999999 89999999999999999999988653
|
| >d1p0ka_ c.1.4.1 (A:) Isopentenyl-diphosphate delta-isomerase {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: FMN-linked oxidoreductases family: FMN-linked oxidoreductases domain: Isopentenyl-diphosphate delta-isomerase species: Bacillus subtilis [TaxId: 1423]
Probab=99.48 E-value=5.9e-13 Score=121.92 Aligned_cols=200 Identities=18% Similarity=0.096 Sum_probs=118.5
Q ss_pred CccceecCCCCCCCC------cHHHHHHHHhCCCceeecCCCCCC-HHHHHHHHHHHHhh-cCCcEEEEeecCCCCHHHH
Q 020013 9 FEYGIVQAPLGPDIS------GPELVAAVANAGGLGLLRAPDWEA-PDYLRDLIRKTRSL-TERPFGVGVVLAFPHNENI 80 (332)
Q Consensus 9 ~~~Pii~apM~~g~s------~~~la~avs~aGglG~i~~~~~~~-~e~~~~~i~~~r~~-~~~p~gvnl~~~~~~~~~~ 80 (332)
++.||+.+||+++.. +..++.+..+.|....++...... .+.........+.. ...+..++...........
T Consensus 34 l~~Pi~is~Ms~g~~~~~~~~~~alA~aA~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 113 (329)
T d1p0ka_ 34 SSSPIFINAMTGGGGKLTYEINKSLARAASQAGIPLAVGSQMSALKDPSERLSYEIVRKENPNGLIFANLGSEATAAQAK 113 (329)
T ss_dssp ESCSEEEECCCCSCHHHHHHHHHHHHHHHHHHTCCEECCCCTTTTTCHHHHHHHHHHHHHCSSSCEEEEEETTCCHHHHH
T ss_pred cCCceEECCHHHhhhhccHHHHHHHHHHHHHcCCCeecccccccchhHHHHhhhhhHhhhCCcceEEEeeccchhHHHHH
Confidence 567999999974431 235666666667544444322122 22223333333332 2334445554443334444
Q ss_pred HHHHhcCCcEEEEccCCC--------------cHHHHHHHHh-CCCEEE-Eec---CCHHHHHHHHHcCCCEEEEecCCC
Q 020013 81 KAILSEKVAVLQVSWGEY--------------SEELVLEAHS-AGVKVV-PQV---GSFDEARKAVNAGVDAIIVQGREA 141 (332)
Q Consensus 81 ~~~~~~~~~~I~~~~g~~--------------~~~~i~~~~~-~g~~v~-~~v---~s~~~a~~a~~~g~D~ivv~G~ea 141 (332)
+...+.+.+.+.++...+ ..+.++.+++ .+.+++ ..+ .+.+.+..+.++|+|+|++.|.
T Consensus 114 ~~~~~~g~~ai~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~vivk~v~~~~~~~~a~~~~~~GaD~i~v~~~-- 191 (329)
T d1p0ka_ 114 EAVEMIGANALQIHLNVIQEIVMPEGDRSFSGALKRIEQICSRVSVPVIVKEVGFGMSKASAGKLYEAGAAAVDIGGY-- 191 (329)
T ss_dssp HHHHHTTCSEEEEEECTTTTC--------CTTHHHHHHHHHHHCSSCEEEEEESSCCCHHHHHHHHHHTCSEEEEEC---
T ss_pred HHHHHcCCCEEEecccccchhhhccccccccchHHHHHHHHHHcCCCcEEEecCCcchHHHHHHHHhcCCCEEEEcCC--
Confidence 555567888887653221 1134455544 344444 333 5889999999999999999876
Q ss_pred CcccCC-----------------CCchhhhHHHHHHHhCCCCCcEEeecCcCCHHHHHHHHHcCcceeeeccccccCccC
Q 020013 142 GGHVIG-----------------QDGLISLLPMVVDLIGDRDIPIIAAGGIVDARGYVAALSLGAQGICLGTRFVASEES 204 (332)
Q Consensus 142 GGh~~~-----------------~~~~~~ll~~i~~~~~~~~iPviaaGGI~~~~~v~~al~~GA~gV~~GT~fl~t~Es 204 (332)
||.... .......++++..... ++|||++|||.++.|+.++|++|||+|++|+.|+..-.+
T Consensus 192 gG~~~~~~~~~~~~~~~g~~~~~~~~~~~~l~~~~~~~~--~v~viadGGIr~g~Dv~KAlalGAdaV~iGr~~l~al~~ 269 (329)
T d1p0ka_ 192 GGTNFSKIENLRRQRQISFFNSWGISTAASLAEIRSEFP--ASTMIASGGLQDALDVAKAIALGASCTGMAGHFLKALTD 269 (329)
T ss_dssp --------------CCGGGGTTCSCCHHHHHHHHHHHCT--TSEEEEESSCCSHHHHHHHHHTTCSEEEECHHHHHHHHH
T ss_pred CCCCccccchhhcccCccchhHhHHHHHHHHHHHHhhcC--CceEEEcCCcccHHHHHHHHHcCCCchhccHHHHHHhcc
Confidence 332110 0123344455555443 799999999999999999999999999999999876544
Q ss_pred CCCHHHHH
Q 020013 205 YAHPEYKR 212 (332)
Q Consensus 205 ~~~~~~k~ 212 (332)
...+..++
T Consensus 270 ~G~~gv~~ 277 (329)
T d1p0ka_ 270 SGEEGLLE 277 (329)
T ss_dssp HHHHHHHH
T ss_pred CCHHHHHH
Confidence 33333333
|
| >d1wbha1 c.1.10.1 (A:1-213) KDPG aldolase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Aldolase family: Class I aldolase domain: KDPG aldolase species: Escherichia coli [TaxId: 562]
Probab=99.47 E-value=3.1e-13 Score=115.42 Aligned_cols=177 Identities=20% Similarity=0.282 Sum_probs=138.3
Q ss_pred cchhhcCCccceecCCCCCCCCcHHHHHHHHhC---CCceeecCCCCCCHHHHHHHHHHHHhh-cCCcEEEEeecCCCCH
Q 020013 2 GWRGMLGFEYGIVQAPLGPDISGPELVAAVANA---GGLGLLRAPDWEAPDYLRDLIRKTRSL-TERPFGVGVVLAFPHN 77 (332)
Q Consensus 2 ~~~~~l~~~~Pii~apM~~g~s~~~la~avs~a---GglG~i~~~~~~~~e~~~~~i~~~r~~-~~~p~gvnl~~~~~~~ 77 (332)
+..++|. ..||| |.- ...+++.+..++++ ||+.++.. .+.+|+. .+.++++++. .+.-+|++-+.+ .
T Consensus 7 ~~~~~l~-~~~ii--pvl-r~~~~~~a~~~~~al~~~Gi~~iEi-tl~tp~a-~~~I~~l~~~~p~~~vGaGTV~~---~ 77 (213)
T d1wbha1 7 SAESILT-TGPVV--PVI-VVKKLEHAVPMAKALVAGGVRVLNV-TLRTECA-VDAIRAIAKEVPEAIVGAGTVLN---P 77 (213)
T ss_dssp CHHHHHH-SCSEE--EEE-CCSSGGGHHHHHHHHHHTTCCEEEE-ESCSTTH-HHHHHHHHHHCTTSEEEEESCCS---H
T ss_pred CHHHHHH-hCCEE--EEE-ECCCHHHHHHHHHHHHHCCCCEEEE-eCCChhH-HHHHHHHHHHCCCCeeecccccc---H
Confidence 3445565 45777 664 46677766666654 89999977 3667665 5566666653 566788887764 7
Q ss_pred HHHHHHHhcCCcEEEEccCCCcHHHHHHHHhCCCEEEEecCCHHHHHHHHHcCCCEEEEecCCCCcccCCCCchhhhHHH
Q 020013 78 ENIKAILSEKVAVLQVSWGEYSEELVLEAHSAGVKVVPQVGSFDEARKAVNAGVDAIIVQGREAGGHVIGQDGLISLLPM 157 (332)
Q Consensus 78 ~~~~~~~~~~~~~I~~~~g~~~~~~i~~~~~~g~~v~~~v~s~~~a~~a~~~g~D~ivv~G~eaGGh~~~~~~~~~ll~~ 157 (332)
++++.+.+.|++++... + ..+++++.+++.++++++.+.|+.|+..+.++|+|.+.+...+. ......++.
T Consensus 78 ~~~~~a~~aGa~FivSP-~-~~~~v~~~a~~~~i~~iPGv~TpsEi~~A~~~G~~~vKlFPA~~-------~Gg~~~lka 148 (213)
T d1wbha1 78 QQLAEVTEAGAQFAISP-G-LTEPLLKAATEGTIPLIPGISTVSELMLGMDYGLKEFKFFPAEA-------NGGVKALQA 148 (213)
T ss_dssp HHHHHHHHHTCSCEEES-S-CCHHHHHHHHHSSSCEEEEESSHHHHHHHHHTTCCEEEETTTTT-------TTHHHHHHH
T ss_pred HHHHHHHHCCCcEEECC-C-CCHHHHHHHHhcCCCccCCcCCHHHHHHHHHCCCCEEEeccchh-------cChHHHHHH
Confidence 88999999999999887 4 46789999999999999999999999999999999999954421 122456677
Q ss_pred HHHHhCCCCCcEEeecCcCCHHHHHHHHHcCcceeeeccccc
Q 020013 158 VVDLIGDRDIPIIAAGGIVDARGYVAALSLGAQGICLGTRFV 199 (332)
Q Consensus 158 i~~~~~~~~iPviaaGGI~~~~~v~~al~~GA~gV~~GT~fl 199 (332)
+..-++ ++++++.||| +.+|+.+++++|+.++.+||.++
T Consensus 149 l~~p~p--~~~~~ptGGV-~~~n~~~yl~~g~v~~~~Gs~l~ 187 (213)
T d1wbha1 149 IAGPFS--QVRFCPTGGI-SPANYRDYLALKSVLCIGGSWLV 187 (213)
T ss_dssp HHTTCT--TCEEEEBSSC-CTTTHHHHHTSTTBSCEEEGGGS
T ss_pred hcCccc--CCceeeeCCC-CHHHHHHHHhCCCEEEEEChhhC
Confidence 766554 7999999999 78999999999999999998866
|
| >d1vhca_ c.1.10.1 (A:) Hypothetical protein HI0047 {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Aldolase family: Class I aldolase domain: Hypothetical protein HI0047 species: Haemophilus influenzae [TaxId: 727]
Probab=99.41 E-value=9.8e-13 Score=112.25 Aligned_cols=169 Identities=20% Similarity=0.310 Sum_probs=131.7
Q ss_pred cceecCCCCCCCCcHHHHHHHHh---CCCceeecCCCCCCHHHHHHHHHHHHh-hcCCcEEEEeecCCCCHHHHHHHHhc
Q 020013 11 YGIVQAPLGPDISGPELVAAVAN---AGGLGLLRAPDWEAPDYLRDLIRKTRS-LTERPFGVGVVLAFPHNENIKAILSE 86 (332)
Q Consensus 11 ~Pii~apM~~g~s~~~la~avs~---aGglG~i~~~~~~~~e~~~~~i~~~r~-~~~~p~gvnl~~~~~~~~~~~~~~~~ 86 (332)
.||+ |.- ...+++.+..+++ .||+.++.. .+.+++.+ +.++++++ ..+..+|++-+.+ .+.++.+.+.
T Consensus 14 ~~ii--pvl-r~~~~~~~~~~~~al~~~Gi~~iEi-tl~~~~a~-~~I~~l~~~~p~~~vGaGTV~~---~~~~~~a~~a 85 (212)
T d1vhca_ 14 LKIV--PVI-ALDNADDILPLADTLAKNGLSVAEI-TFRSEAAA-DAIRLLRANRPDFLIAAGTVLT---AEQVVLAKSS 85 (212)
T ss_dssp HCEE--EEE-CCSSGGGHHHHHHHHHHTTCCEEEE-ETTSTTHH-HHHHHHHHHCTTCEEEEESCCS---HHHHHHHHHH
T ss_pred CCEE--EEE-eCCCHHHHHHHHHHHHHCCCCEEEE-eCCChhHH-HHHHHHHhcCCCceEeeeeccc---HHHHHHHHhh
Confidence 4454 443 3455566655555 488999976 36677654 56677754 4567788887774 6889999999
Q ss_pred CCcEEEEccCCCcHHHHHHHHhCCCEEEEecCCHHHHHHHHHcCCCEEEEecCCCCcccCCCCchhhhHHHHHHHhCCCC
Q 020013 87 KVAVLQVSWGEYSEELVLEAHSAGVKVVPQVGSFDEARKAVNAGVDAIIVQGREAGGHVIGQDGLISLLPMVVDLIGDRD 166 (332)
Q Consensus 87 ~~~~I~~~~g~~~~~~i~~~~~~g~~v~~~v~s~~~a~~a~~~g~D~ivv~G~eaGGh~~~~~~~~~ll~~i~~~~~~~~ 166 (332)
|++++... + ..+++++.+++.++++++.+.|+.|+..|.+.|+|.|.+...+. ......++.+..-++ +
T Consensus 86 Ga~FivSP-~-~~~~v~~~a~~~~i~~iPGv~TpsEi~~A~~~G~~~vK~FPA~~-------~gG~~~lkal~~p~p--~ 154 (212)
T d1vhca_ 86 GADFVVTP-G-LNPKIVKLCQDLNFPITPGVNNPMAIEIALEMGISAVKFFPAEA-------SGGVKMIKALLGPYA--Q 154 (212)
T ss_dssp TCSEEECS-S-CCHHHHHHHHHTTCCEECEECSHHHHHHHHHTTCCEEEETTTTT-------TTHHHHHHHHHTTTT--T
T ss_pred CCcEEECC-C-CCHHHHHHHHhcCCCccCCcCCHHHHHHHHHCCCCEEEEccccc-------cchHHHHHHHhcccc--C
Confidence 99999887 4 36789999999999999999999999999999999999965421 112456777776664 7
Q ss_pred CcEEeecCcCCHHHHHHHHHcCcceeeeccccc
Q 020013 167 IPIIAAGGIVDARGYVAALSLGAQGICLGTRFV 199 (332)
Q Consensus 167 iPviaaGGI~~~~~v~~al~~GA~gV~~GT~fl 199 (332)
+|+++.||| +.+|+.++|++|+.++.+||.++
T Consensus 155 ~~~~ptGGV-~~~N~~~yl~~g~v~~~~Gs~l~ 186 (212)
T d1vhca_ 155 LQIMPTGGI-GLHNIRDYLAIPNIVACGGSWFV 186 (212)
T ss_dssp CEEEEBSSC-CTTTHHHHHTSTTBCCEEECGGG
T ss_pred CeEEecCCC-CHHHHHHHHhCCCEEEEEChhhC
Confidence 999999999 78999999999999999999876
|
| >d1tb3a1 c.1.4.1 (A:1-349) Hydroxyacid oxidase {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: FMN-linked oxidoreductases family: FMN-linked oxidoreductases domain: Hydroxyacid oxidase species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.39 E-value=5.5e-12 Score=116.41 Aligned_cols=188 Identities=16% Similarity=0.147 Sum_probs=123.0
Q ss_pred hhcC--CccceecCCCCCCCC-----cHHHHHHHHhCCCceeecCCCCCCHHHHHHHHHHHHhhcCCcEEEEeecCCCC-
Q 020013 5 GMLG--FEYGIVQAPLGPDIS-----GPELVAAVANAGGLGLLRAPDWEAPDYLRDLIRKTRSLTERPFGVGVVLAFPH- 76 (332)
Q Consensus 5 ~~l~--~~~Pii~apM~~g~s-----~~~la~avs~aGglG~i~~~~~~~~e~~~~~i~~~r~~~~~p~gvnl~~~~~~- 76 (332)
++|| +++|++-+||+++-. +..++.+..+.|....++..+..+.|+ +.+ ...+.+...++....+.
T Consensus 62 ~~lG~~l~~P~~Iapmtgg~~~~~~~~~~lA~aA~~~g~~~~~~s~s~~~~e~----v~~--~~~~~~~~~ql~~~~~~~ 135 (349)
T d1tb3a1 62 TIQGQEISAPICISPTAFHSIAWPDGEKSTARAAQEANICYVISSYASYSLED----IVA--AAPEGFRWFQLYMKSDWD 135 (349)
T ss_dssp EETTEEESSSEEECCCSCGGGTCTTTHHHHHHHHHHHTCCEEECTTCSSCHHH----HHH--HSTTCCEEEECCCCSCTT
T ss_pred eECCcCccceEEEcchhcccccccchhhHHHHhhhhcccceeecccccccchh----hhh--hccCCCeeeeeecccCHH
Confidence 4566 678999999984321 456666666666555554432223332 111 12345556666554432
Q ss_pred --HHHHHHHHhcCCcEEEEccCC---------------------------------------------CcHHHHHHHHhC
Q 020013 77 --NENIKAILSEKVAVLQVSWGE---------------------------------------------YSEELVLEAHSA 109 (332)
Q Consensus 77 --~~~~~~~~~~~~~~I~~~~g~---------------------------------------------~~~~~i~~~~~~ 109 (332)
.+.++.+.+.+...+.+.... ..-+.++.+++.
T Consensus 136 ~~~~~i~~~~~~g~~a~~~tvd~~~~~~~~~d~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~ 215 (349)
T d1tb3a1 136 FNKQMVQRAEALGFKALVITIDTPVLGNRRRDKRNQLNLEANILLKDLRALKEEKPTQSVPVSFPKASFCWNDLSLLQSI 215 (349)
T ss_dssp HHHHHHHHHHHHTCCCEEEECSCSSCCCCHHHHHTTCCCCC----CCSCCCCC-------------CCCCHHHHHHHHTT
T ss_pred HHHHHHHHHHhcCCcccccccCchhhcchhhhhhccccCCcccchhhhhhhhhccccccccccccCCCCCHHHHHHHHHh
Confidence 233444555555544322100 011334555553
Q ss_pred -CCE-EEEecCCHHHHHHHHHcCCCEEEEecCCCCccc-CCCCchhhhHHHHHHHhCCCCCcEEeecCcCCHHHHHHHHH
Q 020013 110 -GVK-VVPQVGSFDEARKAVNAGVDAIIVQGREAGGHV-IGQDGLISLLPMVVDLIGDRDIPIIAAGGIVDARGYVAALS 186 (332)
Q Consensus 110 -g~~-v~~~v~s~~~a~~a~~~g~D~ivv~G~eaGGh~-~~~~~~~~ll~~i~~~~~~~~iPviaaGGI~~~~~v~~al~ 186 (332)
+.+ ++..+.+.+++..+.+.|+|++++.+. ||.. ++..++...++++++.++. ++|||++|||.++.|+.++|+
T Consensus 216 ~~~pii~Kgi~~~~da~~a~~~G~d~i~vsnh--ggr~~d~~~~~~~~l~~i~~~~~~-~~~iiadGGIR~G~Dv~KALA 292 (349)
T d1tb3a1 216 TRLPIILKGILTKEDAELAMKHNVQGIVVSNH--GGRQLDEVSASIDALREVVAAVKG-KIEVYMDGGVRTGTDVLKALA 292 (349)
T ss_dssp CCSCEEEEEECSHHHHHHHHHTTCSEEEECCG--GGTSSCSBCCHHHHHHHHHHHHTT-SSEEEEESSCCSHHHHHHHHH
T ss_pred cCCCcccchhhhhHHHHHHHHhhccceeeecc--ccccccccccchhhcceeeeccCC-CeeEEeccCcCcHHHHHHHHH
Confidence 444 456789999999999999999999766 3322 2335678889999988764 799999999999999999999
Q ss_pred cCcceeeeccccccC
Q 020013 187 LGAQGICLGTRFVAS 201 (332)
Q Consensus 187 ~GA~gV~~GT~fl~t 201 (332)
+||++|.+|..|+..
T Consensus 293 LGA~~V~igrp~L~~ 307 (349)
T d1tb3a1 293 LGARCIFLGRPILWG 307 (349)
T ss_dssp TTCSCEEESHHHHHH
T ss_pred cCCCEEEEChHHHHH
Confidence 999999999999865
|
| >d1xi3a_ c.1.3.1 (A:) Thiamin phosphate synthase {Archaeon (Pyrococcus furiosus) [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Thiamin phosphate synthase family: Thiamin phosphate synthase domain: Thiamin phosphate synthase species: Archaeon (Pyrococcus furiosus) [TaxId: 2261]
Probab=99.35 E-value=8.8e-12 Score=106.53 Aligned_cols=185 Identities=18% Similarity=0.222 Sum_probs=125.2
Q ss_pred hhhcCCccceecCCCCCCCCcHHHHHHHHhCCCceeecCCC-CCCHHHHHHHHHHHHhhcCCcEEEEeecCCCCHHHHHH
Q 020013 4 RGMLGFEYGIVQAPLGPDISGPELVAAVANAGGLGLLRAPD-WEAPDYLRDLIRKTRSLTERPFGVGVVLAFPHNENIKA 82 (332)
Q Consensus 4 ~~~l~~~~Pii~apM~~g~s~~~la~avs~aGglG~i~~~~-~~~~e~~~~~i~~~r~~~~~p~gvnl~~~~~~~~~~~~ 82 (332)
.+.|++ |.|...-+ .+..+.+..+.++ |+.++.... ..+.+++.+...++++.+. .+++-++++ +.++.
T Consensus 3 ~~~l~l-y~ITd~~~---~~~~~~v~~~l~~-Gv~~vqlR~k~~~~~e~~~~a~~l~~i~~-~~~~~liin----d~~~l 72 (206)
T d1xi3a_ 3 RNKLKL-YVITDRRL---KPEVESVREALEG-GATAIQMRIKNAPTREMYEIGKTLRQLTR-EYDALFFVD----DRVDV 72 (206)
T ss_dssp HHHTSE-EEECCTTT---SCHHHHHHHHHHT-TCSEEEECCCSCCHHHHHHHHHHHHHHHH-HTTCEEEEE----SCHHH
T ss_pred ccCCeE-EEEeCCcc---cCHHHHHHHHHHc-CCCEEEEcCCCCCHHHHHHHHHHHHHHHH-HcCCeEEec----hhHHH
Confidence 344553 66653222 2456667766665 577875411 2355566666666665432 123344443 34678
Q ss_pred HHhcCCcEEEEccCCCcHHHHHHHHhCCCEEEEecCCHHHHHHHHHcCCCEEEEecC-CCCcccCCCCchhhhHHHHHHH
Q 020013 83 ILSEKVAVLQVSWGEYSEELVLEAHSAGVKVVPQVGSFDEARKAVNAGVDAIIVQGR-EAGGHVIGQDGLISLLPMVVDL 161 (332)
Q Consensus 83 ~~~~~~~~I~~~~g~~~~~~i~~~~~~g~~v~~~v~s~~~a~~a~~~g~D~ivv~G~-eaGGh~~~~~~~~~ll~~i~~~ 161 (332)
+.+.+++.|+++..+.+.... +....+..+...+++.+++..+...|+||+.+... ....|.......+..+.++.+.
T Consensus 73 A~~~~adGvHl~~~~~~~~~~-~~~~~~~iig~s~h~~~e~~~a~~~g~DYi~~gpvf~T~tk~~~~~~g~~~l~~~~~~ 151 (206)
T d1xi3a_ 73 ALAVDADGVQLGPEDMPIEVA-KEIAPNLIIGASVYSLEEALEAEKKGADYLGAGSVFPTKTKEDARVIGLEGLRKIVES 151 (206)
T ss_dssp HHHHTCSEEEECTTSCCHHHH-HHHCTTSEEEEEESSHHHHHHHHHHTCSEEEEECSSCC----CCCCCHHHHHHHHHHH
T ss_pred HHhccCceEeeccccccHhhh-hhcccccccccccCCHHHHHHHHhcCCCEEEeccccccccccccccccHHHHHHHHHh
Confidence 888999999998665554333 33345667778899999999999999999998442 2223332233457888888877
Q ss_pred hCCCCCcEEeecCcCCHHHHHHHHHcCcceeeeccccccCcc
Q 020013 162 IGDRDIPIIAAGGIVDARGYVAALSLGAQGICLGTRFVASEE 203 (332)
Q Consensus 162 ~~~~~iPviaaGGI~~~~~v~~al~~GA~gV~~GT~fl~t~E 203 (332)
. ++||++.||| +.+++.+++..||+||.+.+.++.++.
T Consensus 152 ~---~~Pv~AiGGI-~~~ni~~~~~~Ga~gvAvis~I~~~~d 189 (206)
T d1xi3a_ 152 V---KIPVVAIGGI-NKDNAREVLKTGVDGIAVISAVMGAED 189 (206)
T ss_dssp C---SSCEEEESSC-CTTTHHHHHTTTCSEEEESHHHHTSSS
T ss_pred c---CCCEEEECCC-CHHHHHHHHHhCCCEEEEhHHHHCCCC
Confidence 6 7999999999 899999999999999999999997643
|
| >d1vcfa1 c.1.4.1 (A:23-332) Isopentenyl-diphosphate delta-isomerase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: FMN-linked oxidoreductases family: FMN-linked oxidoreductases domain: Isopentenyl-diphosphate delta-isomerase species: Thermus thermophilus [TaxId: 274]
Probab=99.34 E-value=3.5e-12 Score=115.39 Aligned_cols=194 Identities=15% Similarity=0.119 Sum_probs=108.8
Q ss_pred hhcC--CccceecCCCCCCCCcH-----HHHHHHHhCCCceee-cCCCCCCHHHHHHHHHHHHh-hcCCcEEEEeecCCC
Q 020013 5 GMLG--FEYGIVQAPLGPDISGP-----ELVAAVANAGGLGLL-RAPDWEAPDYLRDLIRKTRS-LTERPFGVGVVLAFP 75 (332)
Q Consensus 5 ~~l~--~~~Pii~apM~~g~s~~-----~la~avs~aGglG~i-~~~~~~~~e~~~~~i~~~r~-~~~~p~gvnl~~~~~ 75 (332)
++|| ++.||+.+||+++.... .++.+..++| +.+. +..+....+......-.+++ ..+.++..++.....
T Consensus 29 ~~~G~~l~~Pi~iapm~~~~~~~~~~~~~lA~aA~~~g-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 107 (310)
T d1vcfa1 29 PFLGKTLKAPFLIGAMTGGEENGERINLALAEAAEALG-VGMMLGSGRILLERPEALRSFRVRKVAPKALLIANLGLAQL 107 (310)
T ss_dssp EETTEEESSSEEECCCC---CCHHHHHHHHHHHHHHHT-CEEEEEECHHHHHCTTTHHHHCCTTTCSSSCEEEEEEGGGG
T ss_pred EECCEEcCCCEEEcChhhhhhhhhHHHHHHHHHHHHcC-CCeEeccchhcchhhhhhcccchHHhcCCcceeeeecccch
Confidence 4566 67899999997544333 2344444444 3333 22110000000000111222 234566667665432
Q ss_pred C---HHHHH-HHHhcCCcEEEEccCC---------C----cHHHHHHHHhCCCEEEEe-c---CCHHHHHHHHHcCCCEE
Q 020013 76 H---NENIK-AILSEKVAVLQVSWGE---------Y----SEELVLEAHSAGVKVVPQ-V---GSFDEARKAVNAGVDAI 134 (332)
Q Consensus 76 ~---~~~~~-~~~~~~~~~I~~~~g~---------~----~~~~i~~~~~~g~~v~~~-v---~s~~~a~~a~~~g~D~i 134 (332)
. .+... .....+.+.+..+... . ..+......+...+++.+ + .+.++++.+.++|+|+|
T Consensus 108 ~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~k~v~~~~~~e~a~~~~~aGvd~i 187 (310)
T d1vcfa1 108 RRYGRDDLLRLVEMLEADALAFHVNPLQEAVQRGDTDFRGLVERLAELLPLPFPVMVKEVGHGLSREAALALRDLPLAAV 187 (310)
T ss_dssp GTCCHHHHHHHHHHHTCSEEEEECCHHHHHHTTSCCCCTTHHHHHHHHCSCSSCEEEECSSSCCCHHHHHHHTTSCCSEE
T ss_pred hhhhHHHHHHHHHhcCCCeeccccccchhhhcccccccccHHHHHHHHhhccCCceeeeecCcccHHHHHHHHHcCCCEE
Confidence 1 22222 2233466776655321 0 112223333345565543 3 58999999999999999
Q ss_pred EEecCCCCc--------ccCC---------CCchhhhHHHHHHHhCCCCCcEEeecCcCCHHHHHHHHHcCcceeeeccc
Q 020013 135 IVQGREAGG--------HVIG---------QDGLISLLPMVVDLIGDRDIPIIAAGGIVDARGYVAALSLGAQGICLGTR 197 (332)
Q Consensus 135 vv~G~eaGG--------h~~~---------~~~~~~ll~~i~~~~~~~~iPviaaGGI~~~~~v~~al~~GA~gV~~GT~ 197 (332)
++.|..+.. +.++ ..+....++.+.+... ++|||++|||.++.|+.++|++|||+|++|+.
T Consensus 188 ~vsn~gg~~~~~~~~~~~~~~~~~~~~~~~g~~~~~al~~~~~~~~--~i~Ii~dGGIr~g~Dv~KALalGAdaV~iGr~ 265 (310)
T d1vcfa1 188 DVAGAGGTSWARVEEWVRFGEVRHPELCEIGIPTARAILEVREVLP--HLPLVASGGVYTGTDGAKALALGADLLAVARP 265 (310)
T ss_dssp ECCCBTSCCHHHHHHTC--------CCTTCSCBHHHHHHHHHHHCS--SSCEEEESSCCSHHHHHHHHHHTCSEEEECGG
T ss_pred EeccccccchhhcccccccCchhhhhhhhcchHHHHHHHHHHhhcC--CCeEEeCCCCCchHHHHHHHHhCCCEeeEhHH
Confidence 998763211 0000 0234455666665543 79999999999999999999999999999999
Q ss_pred cccC
Q 020013 198 FVAS 201 (332)
Q Consensus 198 fl~t 201 (332)
|+..
T Consensus 266 ~l~~ 269 (310)
T d1vcfa1 266 LLRP 269 (310)
T ss_dssp GHHH
T ss_pred HHHH
Confidence 9854
|
| >d1mxsa_ c.1.10.1 (A:) KDPG aldolase {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Aldolase family: Class I aldolase domain: KDPG aldolase species: Pseudomonas putida [TaxId: 303]
Probab=99.31 E-value=5.7e-12 Score=107.59 Aligned_cols=169 Identities=19% Similarity=0.264 Sum_probs=132.3
Q ss_pred cceecCCCCCCCCcHHHHHHHHhC---CCceeecCCCCCCHHHHHHHHHHHHhh-cCCcEEEEeecCCCCHHHHHHHHhc
Q 020013 11 YGIVQAPLGPDISGPELVAAVANA---GGLGLLRAPDWEAPDYLRDLIRKTRSL-TERPFGVGVVLAFPHNENIKAILSE 86 (332)
Q Consensus 11 ~Pii~apM~~g~s~~~la~avs~a---GglG~i~~~~~~~~e~~~~~i~~~r~~-~~~p~gvnl~~~~~~~~~~~~~~~~ 86 (332)
.||| |.- ...+++.+..++++ ||+.++.. .+.+|+. .+.++.+++. .+..+|++-+.+ .++++.+.+.
T Consensus 17 ~~ii--pvl-~~~~~~~a~~~~~al~~~Gi~~iEi-tl~~p~a-~~~i~~l~~~~p~~~vGaGTV~~---~~~~~~a~~a 88 (216)
T d1mxsa_ 17 ARIL--PVI-TIAREEDILPLADALAAGGIRTLEV-TLRSQHG-LKAIQVLREQRPELCVGAGTVLD---RSMFAAVEAA 88 (216)
T ss_dssp HSEE--EEE-CCSCGGGHHHHHHHHHHTTCCEEEE-ESSSTHH-HHHHHHHHHHCTTSEEEEECCCS---HHHHHHHHHH
T ss_pred CCEE--EEE-ECCCHHHHHHHHHHHHHCCCCEEEE-eCCChhH-HHHHHHHHHhCCCcceeeeeeec---HHHHHHHHhC
Confidence 3555 543 45666666666654 89999876 3667765 4667777654 567788887774 6889999999
Q ss_pred CCcEEEEccCCCcHHHHHHHHhCCCEEEEecCCHHHHHHHHHcCCCEEEEecCC-CCcccCCCCchhhhHHHHHHHhCCC
Q 020013 87 KVAVLQVSWGEYSEELVLEAHSAGVKVVPQVGSFDEARKAVNAGVDAIIVQGRE-AGGHVIGQDGLISLLPMVVDLIGDR 165 (332)
Q Consensus 87 ~~~~I~~~~g~~~~~~i~~~~~~g~~v~~~v~s~~~a~~a~~~g~D~ivv~G~e-aGGh~~~~~~~~~ll~~i~~~~~~~ 165 (332)
|++++... + ..+++++.+++.++++++.+.|+.|+..+.+.|+|.|.+...+ .|| ...++.+..-++
T Consensus 89 Ga~FivsP-~-~~~~v~~~a~~~~i~~iPGv~TpsEi~~A~~~G~~~vKlFPA~~~~g--------~~~ikal~~p~p-- 156 (216)
T d1mxsa_ 89 GAQFVVTP-G-ITEDILEAGVDSEIPLLPGISTPSEIMMGYALGYRRFKLFPAEISGG--------VAAIKAFGGPFG-- 156 (216)
T ss_dssp TCSSEECS-S-CCHHHHHHHHHCSSCEECEECSHHHHHHHHTTTCCEEEETTHHHHTH--------HHHHHHHHTTTT--
T ss_pred CCCEEECC-C-CcHHHHHHHHhcCCCccCCcCCHHHHHHHHHCCCCEEEecccccccc--------HHHHHHHhcccc--
Confidence 99999887 3 3678999999999999999999999999999999999995443 122 446667666554
Q ss_pred CCcEEeecCcCCHHHHHHHHHcCcceeeecccccc
Q 020013 166 DIPIIAAGGIVDARGYVAALSLGAQGICLGTRFVA 200 (332)
Q Consensus 166 ~iPviaaGGI~~~~~v~~al~~GA~gV~~GT~fl~ 200 (332)
++|+++.||| +.+|+.++|++|+..++.||.++.
T Consensus 157 ~~~fiptGGV-~~~n~~~yl~~~~v~avggs~l~~ 190 (216)
T d1mxsa_ 157 DIRFCPTGGV-NPANVRNYMALPNVMCVGTTWMLD 190 (216)
T ss_dssp TCEEEEBSSC-CTTTHHHHHHSTTBCCEEECTTSC
T ss_pred cCceeccCCC-CHHHHHHHHhcCCeEEEEccccCC
Confidence 7999999999 789999999999988888877664
|
| >d1gtea2 c.1.4.1 (A:533-844) Dihydropyrimidine dehydrogenase, domain 4 {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: FMN-linked oxidoreductases family: FMN-linked oxidoreductases domain: Dihydropyrimidine dehydrogenase, domain 4 species: Pig (Sus scrofa) [TaxId: 9823]
Probab=99.31 E-value=3.9e-11 Score=108.81 Aligned_cols=192 Identities=15% Similarity=0.203 Sum_probs=120.2
Q ss_pred hhcC--CccceecCCCCCCCCcHHHHHHHHhCCCceeecCCC-------------------------------------C
Q 020013 5 GMLG--FEYGIVQAPLGPDISGPELVAAVANAGGLGLLRAPD-------------------------------------W 45 (332)
Q Consensus 5 ~~l~--~~~Pii~apM~~g~s~~~la~avs~aGglG~i~~~~-------------------------------------~ 45 (332)
+++| ++.||+.++.. .-.+.++......+| +|++..++ +
T Consensus 4 ~~~Gl~l~nPi~~Asg~-~~~~~~~~~~~~~~G-~G~vv~ktvt~~~~~~~n~~pr~~~~~~~~~~~~~~~~~~~n~~g~ 81 (312)
T d1gtea2 4 EMAGLKFINPFGLASAA-PTTSSSMIRRAFEAG-WGFALTKTFSLDKDIVTNVSPRIVRGTTSGPMYGPGQSSFLNIELI 81 (312)
T ss_dssp EETTEEESSSEEECSSG-GGSSHHHHHHHHHHT-CSEEECCCBCCGGGCCCCCSSCEEECCTTCSCCSSCCSCEEECCCS
T ss_pred EECCEEcCCCcEECCcC-CCCCHHHHHHHHHcC-CcEEEEeeecCCccccCCCCCcEEeccCCccccccccccccccccc
Confidence 3444 67899987643 245777777777766 22221110 0
Q ss_pred --CCHHHHHHHHHHHHhh-cCCcEEEEeecCCCCHH---HHHHHHhcCCcEEEEccCCCc--------------H----H
Q 020013 46 --EAPDYLRDLIRKTRSL-TERPFGVGVVLAFPHNE---NIKAILSEKVAVLQVSWGEYS--------------E----E 101 (332)
Q Consensus 46 --~~~e~~~~~i~~~r~~-~~~p~gvnl~~~~~~~~---~~~~~~~~~~~~I~~~~g~~~--------------~----~ 101 (332)
..++...+.+..++.. .+.+..+++......++ ..+.+.+.++|++.+++++|. + +
T Consensus 82 ~~~g~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~d~~~~a~~~~~~gad~lelN~scPn~~~~~~~~~~~~~~~~~~~~ 161 (312)
T d1gtea2 82 SEKTAAYWCQSVTELKADFPDNIVIASIMCSYNKNDWMELSRKAEASGADALELNLSCPHGMGERGMGLACGQDPELVRN 161 (312)
T ss_dssp CSSCHHHHHHHHHHHHHHCTTSEEEEEECCCSCHHHHHHHHHHHHHTTCSEEEEECCCBCCCC-----SBGGGCHHHHHH
T ss_pred cccchhhhhhhhccccccccccccccccccccchhHHHHHHHHhccCCCCeEeeccCCCCcccccccchhhhhhHHHHHH
Confidence 1234555566665543 23444444444332222 344556779999999876531 1 2
Q ss_pred HHHHHHh-CCCEEEEecC----CHHH-HHHHHHcCCCEEEEecCC-----------------------CCcccCCC---C
Q 020013 102 LVLEAHS-AGVKVVPQVG----SFDE-ARKAVNAGVDAIIVQGRE-----------------------AGGHVIGQ---D 149 (332)
Q Consensus 102 ~i~~~~~-~g~~v~~~v~----s~~~-a~~a~~~g~D~ivv~G~e-----------------------aGGh~~~~---~ 149 (332)
+++.+++ ..++++.++. +..+ ++.+.+.|+|+|++.+.- .||.. |+ .
T Consensus 162 i~~~v~~~~~~pv~vKl~~~~~~~~~i~~~~~~~g~~gi~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~gg~s-G~~i~~ 240 (312)
T d1gtea2 162 ICRWVRQAVQIPFFAKLTPNVTDIVSIARAAKEGGADGVTATNTVSGLMGLKADGTPWPAVGAGKRTTYGGVS-GTAIRP 240 (312)
T ss_dssp HHHHHHHHCSSCEEEEECSCSSCHHHHHHHHHHHTCSEEEECCCEEECCCBCTTSCBSSCBTTTTBBCCEEEE-SGGGHH
T ss_pred HHHHHhhccCCceeecccccchhHHHHHHHHHHhcccceEEEeeccccccccccccccccccccccccccccc-CcCcch
Confidence 3344444 3677777643 3433 566778999999986531 12222 21 1
Q ss_pred chhhhHHHHHHHhCCCCCcEEeecCcCCHHHHHHHHHcCcceeeeccccccC
Q 020013 150 GLISLLPMVVDLIGDRDIPIIAAGGIVDARGYVAALSLGAQGICLGTRFVAS 201 (332)
Q Consensus 150 ~~~~ll~~i~~~~~~~~iPviaaGGI~~~~~v~~al~~GA~gV~~GT~fl~t 201 (332)
..+..+.++++..+ ++|||+.|||.+++|+.+++.+|||+||+||+++..
T Consensus 241 ~al~~v~~~~~~~~--~ipIi~~GGI~~~~d~~~~l~aGA~~Vqv~ta~~~~ 290 (312)
T d1gtea2 241 IALRAVTTIARALP--GFPILATGGIDSAESGLQFLHSGASVLQVCSAVQNQ 290 (312)
T ss_dssp HHHHHHHHHHHHST--TCCEEEESSCCSHHHHHHHHHTTCSEEEESHHHHTS
T ss_pred hhHHHHHHHHHHcC--CCcEEEEcCCCCHHHHHHHHHcCCCeeEECHhhhcc
Confidence 23566777777764 699999999999999999999999999999999864
|
| >d1vhna_ c.1.4.1 (A:) Putative flavin oxidoreducatase TM0096 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: FMN-linked oxidoreductases family: FMN-linked oxidoreductases domain: Putative flavin oxidoreducatase TM0096 species: Thermotoga maritima [TaxId: 2336]
Probab=99.23 E-value=9.6e-11 Score=105.81 Aligned_cols=182 Identities=19% Similarity=0.179 Sum_probs=125.4
Q ss_pred ceecCCCCCCCCcHHHHHHHHhCCCceeecCCCCCCHHHHHHHHHHHHh----hcCCcEEEEeecCCCCHHHH--HHHHh
Q 020013 12 GIVQAPLGPDISGPELVAAVANAGGLGLLRAPDWEAPDYLRDLIRKTRS----LTERPFGVGVVLAFPHNENI--KAILS 85 (332)
Q Consensus 12 Pii~apM~~g~s~~~la~avs~aGglG~i~~~~~~~~e~~~~~i~~~r~----~~~~p~gvnl~~~~~~~~~~--~~~~~ 85 (332)
.|..|||. |+|+..+..-+... |.++..++ +.+.+.+...-++.+. ..+.|+.+.++.+++. ... ..+++
T Consensus 2 ki~LAPM~-g~td~~fR~l~~~~-g~~~~~Te-mi~~~~~~~~~~~~~~~~~~~~e~p~~~Ql~g~~p~-~~~~aa~~~~ 77 (305)
T d1vhna_ 2 KVGLAPMA-GYTDSAFRTLAFEW-GADFAFSE-MVSAKGFLMNSQKTEELLPQPHERNVAVQIFGSEPN-ELSEAARILS 77 (305)
T ss_dssp EEEECCCT-TTCSHHHHHHHHTT-TCCCEECS-CEEHHHHHTTCHHHHHHSCCTTCTTEEEEEECSCHH-HHHHHHHHHT
T ss_pred eEEEECcC-CCccHHHHHHHHHH-CcCEEEEC-CEEechhhhCChhhHhhccCCCCCCeEEEEeccchh-hhhhhhhhhh
Confidence 46789998 89999998755444 45776664 5555433211111221 2368999999998762 222 23355
Q ss_pred cCCcEEEEccCCCcHHHH-------------------HHHH-hCCCEEEEecC-------CHHHHHHHHHcCCCEEEEec
Q 020013 86 EKVAVLQVSWGEYSEELV-------------------LEAH-SAGVKVVPQVG-------SFDEARKAVNAGVDAIIVQG 138 (332)
Q Consensus 86 ~~~~~I~~~~g~~~~~~i-------------------~~~~-~~g~~v~~~v~-------s~~~a~~a~~~g~D~ivv~G 138 (332)
.+.+.|.++.|+|...+. +.++ ..+++|..++. +.+.++.++++|+|.|++.|
T Consensus 78 ~~~~~IdlN~GCP~~~v~~~g~Ga~Ll~~p~~~~~iv~~~~~~~~~pvsvK~RlG~d~~~~~~~~~~l~~~G~~~itvH~ 157 (305)
T d1vhna_ 78 EKYKWIDLNAGCPVRKVVKEGAGGALLKDLRHFRYIVRELRKSVSGKFSVKTRLGWEKNEVEEIYRILVEEGVDEVFIHT 157 (305)
T ss_dssp TTCSEEEEEECCCCHHHHHTTCGGGGGSCHHHHHHHHHHHHHHCSSEEEEEEESCSSSCCHHHHHHHHHHTTCCEEEEES
T ss_pred hheeeeeEEEEecchhhcccccceeeccCHHHHHHHhhhhhhhcccccccccccCcccchhhHHHHHHHHhCCcEEEech
Confidence 699999999999754332 2333 35778776542 34567778899999999999
Q ss_pred CCCCcccCCCCchhhhHHHHHHHhCCCCCcEEeecCcCCHHHHHHHHH-cCcceeeeccccccCcc
Q 020013 139 REAGGHVIGQDGLISLLPMVVDLIGDRDIPIIAAGGIVDARGYVAALS-LGAQGICLGTRFVASEE 203 (332)
Q Consensus 139 ~eaGGh~~~~~~~~~ll~~i~~~~~~~~iPviaaGGI~~~~~v~~al~-~GA~gV~~GT~fl~t~E 203 (332)
+...-. ......|..++++++ ++|||+.|||.+.+++.++++ .|+|||++|...+..+-
T Consensus 158 Rt~~q~-~~~~a~~~~i~~~~~-----~ipvi~NGdI~s~~d~~~~l~~tg~dgVMiGRgal~nP~ 217 (305)
T d1vhna_ 158 RTVVQS-FTGRAEWKALSVLEK-----RIPTFVSGDIFTPEDAKRALEESGCDGLLVARGAIGRPW 217 (305)
T ss_dssp SCTTTT-TSSCCCGGGGGGSCC-----SSCEEEESSCCSHHHHHHHHHHHCCSEEEESGGGTTCTT
T ss_pred hhhhhc-cccchhhhHHHhhhh-----hhhhhcccccccHHHHHHHHHhcCCCeEehhHHHHHhhh
Confidence 854221 122345777765543 799999999999999999997 59999999999887754
|
| >d1p4ca_ c.1.4.1 (A:) Membrane-associated (S)-mandelate dehydrogenase {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: FMN-linked oxidoreductases family: FMN-linked oxidoreductases domain: Membrane-associated (S)-mandelate dehydrogenase species: Pseudomonas putida [TaxId: 303]
Probab=99.21 E-value=1.8e-10 Score=105.95 Aligned_cols=97 Identities=23% Similarity=0.304 Sum_probs=76.8
Q ss_pred HHHHHHHhC-CCE-EEEecCCHHHHHHHHHcCCCEEEEecCCCCccc-CCCCchhhhHHHHHHHhCCCCCcEEeecCcCC
Q 020013 101 ELVLEAHSA-GVK-VVPQVGSFDEARKAVNAGVDAIIVQGREAGGHV-IGQDGLISLLPMVVDLIGDRDIPIIAAGGIVD 177 (332)
Q Consensus 101 ~~i~~~~~~-g~~-v~~~v~s~~~a~~a~~~g~D~ivv~G~eaGGh~-~~~~~~~~ll~~i~~~~~~~~iPviaaGGI~~ 177 (332)
+.++.+++. +.+ ++..+.+.+++..+.+.|+|.+++.++ ||.. ++..++...+++++... ++|||++|||.+
T Consensus 212 ~~i~~l~~~~~~~i~~kgv~~~~~~~~a~~~g~~~~~~s~~--gg~~~~~~~~~~~~l~~i~~~~---~~~viasGGIR~ 286 (353)
T d1p4ca_ 212 EALRWLRDLWPHKLLVKGLLSAEDADRCIAEGADGVILSNH--GGRQLDCAISPMEVLAQSVAKT---GKPVLIDSGFRR 286 (353)
T ss_dssp HHHHHHHHHCCSEEEEEEECCHHHHHHHHHTTCSEEEECCG--GGTSCTTCCCGGGTHHHHHHHH---CSCEEECSSCCS
T ss_pred HHHHHHHhccccchhhhcchhhhhHHHHHhcCCchhhhccc--ccccccccccchhcccchhccc---ccceeecCCcCc
Confidence 345555543 344 456788999999999999999999655 3322 23346788889988876 799999999999
Q ss_pred HHHHHHHHHcCcceeeeccccccCc
Q 020013 178 ARGYVAALSLGAQGICLGTRFVASE 202 (332)
Q Consensus 178 ~~~v~~al~~GA~gV~~GT~fl~t~ 202 (332)
+-||.++|++|||.|.+|..|+..-
T Consensus 287 G~Dv~KALaLGAd~vgigrp~L~~l 311 (353)
T d1p4ca_ 287 GSDIVKALALGAEAVLLGRATLYGL 311 (353)
T ss_dssp HHHHHHHHHTTCSCEEESHHHHHHH
T ss_pred hHHHHHHHHcCCCEEEEcHHHHHHH
Confidence 9999999999999999999999653
|
| >d1kbia1 c.1.4.1 (A:98-511) Flavocytochrome b2, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: FMN-linked oxidoreductases family: FMN-linked oxidoreductases domain: Flavocytochrome b2, C-terminal domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.19 E-value=6.6e-10 Score=104.46 Aligned_cols=100 Identities=22% Similarity=0.367 Sum_probs=75.6
Q ss_pred HHHHHHh-C-CCEEEEecCCHHHHHHHHHcCCCEEEEecCCCCccc-CCCCchhhhHHHHHHHhC----CCCCcEEeecC
Q 020013 102 LVLEAHS-A-GVKVVPQVGSFDEARKAVNAGVDAIIVQGREAGGHV-IGQDGLISLLPMVVDLIG----DRDIPIIAAGG 174 (332)
Q Consensus 102 ~i~~~~~-~-g~~v~~~v~s~~~a~~a~~~g~D~ivv~G~eaGGh~-~~~~~~~~ll~~i~~~~~----~~~iPviaaGG 174 (332)
.++.+++ . +..++..+.+.+++..+.+.|+|++++.+. ||.. ........-++++.+.+. ..++|||++||
T Consensus 237 ~i~~i~~~~~~~~i~kgi~~~~da~~~~~~G~~~i~vsnh--ggr~~d~~~~~~~~l~~i~~~~~~~~v~~~~~viadGG 314 (414)
T d1kbia1 237 DIEELKKKTKLPIVIKGVQRTEDVIKAAEIGVSGVVLSNH--GGRQLDFSRAPIEVLAETMPILEQRNLKDKLEVFVDGG 314 (414)
T ss_dssp HHHHHHHHCSSCEEEEEECSHHHHHHHHHTTCSEEEECCT--TTTSSTTCCCHHHHHHHHHHHHHTTTCBTTBEEEEESS
T ss_pred HHHHHhccCCceEEeeccchhHHHHHHHhcCCcceeeccc--cccccccccccccchhhhhhhhhhhccCCceeEEecCC
Confidence 3455544 2 445667788999999999999999999765 3332 123345556777765532 13699999999
Q ss_pred cCCHHHHHHHHHcCcceeeeccccccCcc
Q 020013 175 IVDARGYVAALSLGAQGICLGTRFVASEE 203 (332)
Q Consensus 175 I~~~~~v~~al~~GA~gV~~GT~fl~t~E 203 (332)
|.++-||+++|++||++|.||..||..--
T Consensus 315 IR~G~DVaKALALGAdaVgigrp~L~~la 343 (414)
T d1kbia1 315 VRRGTDVLKALCLGAKGVGLGRPFLYANS 343 (414)
T ss_dssp CCSHHHHHHHHHHTCSEEEECHHHHHHHH
T ss_pred cCcHHHHHHHHHcCCCEEEEcHHHHHHHH
Confidence 99999999999999999999999997643
|
| >d1a53a_ c.1.2.4 (A:) Indole-3-glycerophosphate synthase, IPGS {Archaeon Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Ribulose-phoshate binding barrel family: Tryptophan biosynthesis enzymes domain: Indole-3-glycerophosphate synthase, IPGS species: Archaeon Sulfolobus solfataricus [TaxId: 2287]
Probab=99.18 E-value=3.1e-10 Score=98.41 Aligned_cols=169 Identities=15% Similarity=0.165 Sum_probs=119.7
Q ss_pred cHHHHHHHHhCCC--ceeecCCCC--CCHHHHHHHHHHHHhhcCCcEEEEeecCCCCHHHHHHHHhcCCcEEEEccCCCc
Q 020013 24 GPELVAAVANAGG--LGLLRAPDW--EAPDYLRDLIRKTRSLTERPFGVGVVLAFPHNENIKAILSEKVAVLQVSWGEYS 99 (332)
Q Consensus 24 ~~~la~avs~aGg--lG~i~~~~~--~~~e~~~~~i~~~r~~~~~p~gvnl~~~~~~~~~~~~~~~~~~~~I~~~~g~~~ 99 (332)
+|.-.+...++|+ +.++.-..| -+.+. +..+++.++.|+-..=|+.+ +.++..+...|+|+|.+.....+
T Consensus 64 d~~~~a~~~~~gA~aiSVLTd~~~F~Gs~~d----l~~v~~~~~~PiLrKDFIid--~~QI~ea~~~GADaiLLI~~~L~ 137 (247)
T d1a53a_ 64 DPIEYSKFMERYAVGLSILTEEKYFNGSYET----LRKIASSVSIPILMKDFIVK--ESQIDDAYNLGADTVLLIVKILT 137 (247)
T ss_dssp CHHHHHHHHTTTCSEEEEECCCTTTCCCHHH----HHHHHHHCCSCEEEESCCCS--HHHHHHHHHHTCSEEEEEGGGSC
T ss_pred CHHHHHHHHHhCCCeEEEecCccccccchHH----HHHHHhccccceeecccccC--hHHHHHHHHhhcchhhhhhhhcc
Confidence 4544444555553 444433322 24544 45566667788776544433 56788888999999988654443
Q ss_pred H----HHHHHHHhCCCEEEEecCCHHHHHHHHHcCCCEEEEecCCCCcccCCCCchhhhHHHHHHHhCCCCCcEEeecCc
Q 020013 100 E----ELVLEAHSAGVKVVPQVGSFDEARKAVNAGVDAIIVQGREAGGHVIGQDGLISLLPMVVDLIGDRDIPIIAAGGI 175 (332)
Q Consensus 100 ~----~~i~~~~~~g~~v~~~v~s~~~a~~a~~~g~D~ivv~G~eaGGh~~~~~~~~~ll~~i~~~~~~~~iPviaaGGI 175 (332)
. ++++.+++.|+.++..|++.+|+.++.+.|++.|-+.++.--... ........+...++. ++.+|+.+||
T Consensus 138 ~~~l~~l~~~a~~lgl~~LvEvh~~~El~~a~~~~a~iIGINnRnL~t~~----vd~~~~~~L~~~ip~-~~~~IaESGI 212 (247)
T d1a53a_ 138 ERELESLLEYARSYGMEPLIEINDENDLDIALRIGARFIGINSRDLETLE----INKENQRKLISMIPS-NVVKVAESGI 212 (247)
T ss_dssp HHHHHHHHHHHHTTTCCCEEEECSHHHHHHHHHTTCSEEEEESBCTTTCC----BCHHHHHHHHHHSCT-TSEEEEESCC
T ss_pred HHHHHHHHHHHHHHhhhHHhhcCCHHHHHHHHhCCCCeEeeeccChhhhh----hhhhHHHHHHhhCCC-CCeEEEecCC
Confidence 3 566677788999999999999999999999999999877543221 112222333334433 6899999999
Q ss_pred CCHHHHHHHHHcCcceeeeccccccCcc
Q 020013 176 VDARGYVAALSLGAQGICLGTRFVASEE 203 (332)
Q Consensus 176 ~~~~~v~~al~~GA~gV~~GT~fl~t~E 203 (332)
.+++++..+..+|+|||.+|+++|.+++
T Consensus 213 ~t~~dv~~l~~~G~davLIGeaLmk~~d 240 (247)
T d1a53a_ 213 SERNEIEELRKLGVNAFLIGSSLMRNPE 240 (247)
T ss_dssp CCHHHHHHHHHTTCCEEEECHHHHHCTT
T ss_pred CCHHHHHHHHHCCCCEEEECHHHcCCCc
Confidence 9999999999999999999999998754
|
| >d2tpsa_ c.1.3.1 (A:) Thiamin phosphate synthase {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Thiamin phosphate synthase family: Thiamin phosphate synthase domain: Thiamin phosphate synthase species: Bacillus subtilis [TaxId: 1423]
Probab=99.18 E-value=1e-10 Score=101.13 Aligned_cols=196 Identities=17% Similarity=0.204 Sum_probs=127.0
Q ss_pred hhcCCccceecCCCCCCCCcHHHHHHHHhCCCceeecCC----CCCCHHHHHHHHHHHHhhc---CCcEEEEeecCCCCH
Q 020013 5 GMLGFEYGIVQAPLGPDISGPELVAAVANAGGLGLLRAP----DWEAPDYLRDLIRKTRSLT---ERPFGVGVVLAFPHN 77 (332)
Q Consensus 5 ~~l~~~~Pii~apM~~g~s~~~la~avs~aGglG~i~~~----~~~~~e~~~~~i~~~r~~~---~~p~gvnl~~~~~~~ 77 (332)
++++ -|.|+...+.. -...+.+.++.. ||+.++... ...+.++..+...++++++ +.++-||
T Consensus 15 ~~~~-ly~i~~~~~~~-~~~~~~v~~al~-~Gv~~iqlR~K~~~~~~~~~~~~~a~~l~~lc~~~~~~liIn-------- 83 (226)
T d2tpsa_ 15 ELLS-VYFIMGSNNTK-ADPVTVVQKALK-GGATLYQFREKGGDALTGEARIKFAEKAQAACREAGVPFIVN-------- 83 (226)
T ss_dssp HHTT-EEEEECGGGCS-SCHHHHHHHHHH-HTCSEEEECCCSTTCCCHHHHHHHHHHHHHHHHHHTCCEEEE--------
T ss_pred hhCC-EEEEECccccc-cCHHHHHHHHHH-CCCCEEEEcCCCccchhHHHHHHHHHHHHHHHHHhCCeEEEc--------
Confidence 4455 37887666642 223455555444 568888642 1235565655556665543 4444444
Q ss_pred HHHHHHHhcCCcEEEEccCCCcHHHHHHHHhCCCEEEEecCCHHHHHHHHHcCCCEEEEecC-CCCcccCC-CCchhhhH
Q 020013 78 ENIKAILSEKVAVLQVSWGEYSEELVLEAHSAGVKVVPQVGSFDEARKAVNAGVDAIIVQGR-EAGGHVIG-QDGLISLL 155 (332)
Q Consensus 78 ~~~~~~~~~~~~~I~~~~g~~~~~~i~~~~~~g~~v~~~v~s~~~a~~a~~~g~D~ivv~G~-eaGGh~~~-~~~~~~ll 155 (332)
+.++.+.+.++|.|+++..+.+....+.... ...+...+++.+++..+.+.|+|||.+... ....|... +.....++
T Consensus 84 d~~~lA~~~~adGvHl~~~d~~~~~~r~~~~-~~iig~S~h~~~e~~~a~~~g~DYi~~gpvf~T~sK~~~~~~~~~~~~ 162 (226)
T d2tpsa_ 84 DDVELALNLKADGIHIGQEDANAKEVRAAIG-DMILGVSAHTMSEVKQAEEDGADYVGLGPIYPTETKKDTRAVQGVSLI 162 (226)
T ss_dssp SCHHHHHHHTCSEEEECTTSSCHHHHHHHHT-TSEEEEEECSHHHHHHHHHHTCSEEEECCSSCCCSSSSCCCCCTTHHH
T ss_pred CCHHHHhhccCCEEEeccccchhhhhhhccc-ceeeeeeccchHHHHHHHhCcCCeEEEecccccccccccccccccchh
Confidence 3467888889999999866656555555444 356778899999999999999999998432 12222211 12335566
Q ss_pred HHHHHHhCCCCCcEEeecCcCCHHHHHHHHHcCcceeeeccccccCccC-CCCHHHHHHHh
Q 020013 156 PMVVDLIGDRDIPIIAAGGIVDARGYVAALSLGAQGICLGTRFVASEES-YAHPEYKRKLV 215 (332)
Q Consensus 156 ~~i~~~~~~~~iPviaaGGI~~~~~v~~al~~GA~gV~~GT~fl~t~Es-~~~~~~k~~~~ 215 (332)
..+.+.. .++||++.||| +.+++.+++.+||+||.+.+.++.++.. .....+++.+.
T Consensus 163 ~~~~~~~--~~~Pv~AiGGI-~~~ni~~l~~~Ga~giAvis~I~~a~dp~~~~~~~~~~~~ 220 (226)
T d2tpsa_ 163 EAVRRQG--ISIPIVGIGGI-TIDNAAPVIQAGADGVSMISAISQAEDPESAARKFREEIQ 220 (226)
T ss_dssp HHHHHTT--CCCCEEEESSC-CTTTSHHHHHTTCSEEEESHHHHTSSCHHHHHHHHHHHHH
T ss_pred HHHHHhc--CCCCEEEecCC-CHHHHHHHHHhCCCEEEEhHHhhcCCCHHHHHHHHHHHHH
Confidence 6665432 27999999999 8999999999999999999999976531 12344444443
|
| >d1nsja_ c.1.2.4 (A:) N-(5'phosphoribosyl)antranilate isomerase, PRAI {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Ribulose-phoshate binding barrel family: Tryptophan biosynthesis enzymes domain: N-(5'phosphoribosyl)antranilate isomerase, PRAI species: Thermotoga maritima [TaxId: 2336]
Probab=99.17 E-value=3.3e-10 Score=96.47 Aligned_cols=167 Identities=17% Similarity=0.185 Sum_probs=120.6
Q ss_pred CCCcHHHHHHHHhCC--CceeecC---CCCCCHHHHHHHHHHHHhhcCCcEEEEeecCCCCHHHHHHHHhcCCcEEEEcc
Q 020013 21 DISGPELVAAVANAG--GLGLLRA---PDWEAPDYLRDLIRKTRSLTERPFGVGVVLAFPHNENIKAILSEKVAVLQVSW 95 (332)
Q Consensus 21 g~s~~~la~avs~aG--glG~i~~---~~~~~~e~~~~~i~~~r~~~~~p~gvnl~~~~~~~~~~~~~~~~~~~~I~~~~ 95 (332)
|+++++.+..+.++| .+||+.. +++.+++.++++...++ .....|.++++.+.++..+.+...++++|++|
T Consensus 8 Git~~~da~~~~~~gad~iGfI~~~~SpR~Vs~~~a~~i~~~~~---~~~~~V~V~v~~~~~~i~~~~~~~~~~~vQlh- 83 (205)
T d1nsja_ 8 GITNLEDALFSVESGADAVGFVFYPKSKRYISPEDARRISVELP---PFVFRVGVFVNEEPEKILDVASYVQLNAVQLH- 83 (205)
T ss_dssp CCCSHHHHHHHHHHTCSEEEEECCTTCTTBCCHHHHHHHHHHSC---SSSEEEEEESSCCHHHHHHHHHHHTCSEEEEC-
T ss_pred CCCcHHHHHHHHhCCCCEEeEeccCCCCCccCHHHHHHHHhhhc---ccceeeccccccHHHHHHhhhhhccccchhcc-
Confidence 688999999998888 5999964 35667887766655443 34567888888775566666677899999999
Q ss_pred CCCcHHHHHHHHhCCCEEE-EecCCHHHHHHHHHcCCCEEEEec--CCCCcccCCCCchhhhHHHHHHHhCCCCCcEEee
Q 020013 96 GEYSEELVLEAHSAGVKVV-PQVGSFDEARKAVNAGVDAIIVQG--REAGGHVIGQDGLISLLPMVVDLIGDRDIPIIAA 172 (332)
Q Consensus 96 g~~~~~~i~~~~~~g~~v~-~~v~s~~~a~~a~~~g~D~ivv~G--~eaGGh~~~~~~~~~ll~~i~~~~~~~~iPviaa 172 (332)
|.++.+.++.++.....+. ..+.+..+...+...-.+.+++.- .+.||. |....|.++..+... ..|++.|
T Consensus 84 g~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~d~~~~~~GGt--G~~~dw~~~~~~~~~----~~~~~LA 157 (205)
T d1nsja_ 84 GEEPIELCRKIAERILVIKAVGVSNERDMERALNYREFPILLDTKTPEYGGS--GKTFDWSLILPYRDR----FRYLVLS 157 (205)
T ss_dssp SCCCHHHHHHHHTTSEEEEEEEESSHHHHHHHGGGTTSCEEEEESCSSSSSC--CSCCCGGGTGGGGGG----SSCEEEE
T ss_pred chhhHHHHhhcccceeeeeeccccchHHHHHHhhcccceeeeccccccCCCC--Ccccchhhcccchhc----ccceeee
Confidence 6677888888876533322 334466666666666677777643 344554 444567777665442 3589999
Q ss_pred cCcCCHHHHHHHHH-cCcceeeecccc
Q 020013 173 GGIVDARGYVAALS-LGAQGICLGTRF 198 (332)
Q Consensus 173 GGI~~~~~v~~al~-~GA~gV~~GT~f 198 (332)
||| +++|+.+++. .++.||-+-|.+
T Consensus 158 GGl-~~~Nv~~ai~~~~p~gvDvsSgv 183 (205)
T d1nsja_ 158 GGL-NPENVRSAIDVVRPFAVDVSSGV 183 (205)
T ss_dssp SSC-CTTTHHHHHHHHCCSEEEESGGG
T ss_pred cCC-CHHHHHHHHHHhCCCEEEEcCcc
Confidence 999 8999999996 899999998876
|
| >d1goxa_ c.1.4.1 (A:) Glycolate oxidase {Spinach (Spinacia oleracea) [TaxId: 3562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: FMN-linked oxidoreductases family: FMN-linked oxidoreductases domain: Glycolate oxidase species: Spinach (Spinacia oleracea) [TaxId: 3562]
Probab=99.17 E-value=1.3e-09 Score=100.39 Aligned_cols=96 Identities=30% Similarity=0.376 Sum_probs=76.2
Q ss_pred HHHHHhC-CCE-EEEecCCHHHHHHHHHcCCCEEEEecCCCCccc-CCCCchhhhHHHHHHHhCCCCCcEEeecCcCCHH
Q 020013 103 VLEAHSA-GVK-VVPQVGSFDEARKAVNAGVDAIIVQGREAGGHV-IGQDGLISLLPMVVDLIGDRDIPIIAAGGIVDAR 179 (332)
Q Consensus 103 i~~~~~~-g~~-v~~~v~s~~~a~~a~~~g~D~ivv~G~eaGGh~-~~~~~~~~ll~~i~~~~~~~~iPviaaGGI~~~~ 179 (332)
++.+++. +.+ ++..+.+.+++..+.+.|+|.+++.+. ||.. ....++...++.+++.+.. ++|||++|||.++-
T Consensus 216 v~~l~~~~~~~~~~kg~~~~~da~~a~~~g~~~~~vsnh--ggr~ld~~~~~~~~l~~i~~~~~~-~~~iiadGGIR~G~ 292 (359)
T d1goxa_ 216 VAWLQTITSLPILVKGVITAEDARLAVQHGAAGIIVSNH--GARQLDYVPATIMALEEVVKAAQG-RIPVFLDGGVRRGT 292 (359)
T ss_dssp HHHHHHHCCSCEEEECCCSHHHHHHHHHTTCSEEEECCG--GGTSSTTCCCHHHHHHHHHHHTTT-SSCEEEESSCCSHH
T ss_pred HHHHHhhcccceeeecccchHHHHHHHHccccceecccc--cccccccccchhhhchhhhhccCC-ccceeeccCcCcHH
Confidence 4555542 344 556688999999999999999999766 3322 2234667788888887753 79999999999999
Q ss_pred HHHHHHHcCcceeeeccccccC
Q 020013 180 GYVAALSLGAQGICLGTRFVAS 201 (332)
Q Consensus 180 ~v~~al~~GA~gV~~GT~fl~t 201 (332)
|++++|++|||.|.+|..||..
T Consensus 293 Di~KALaLGAd~vgigrp~L~~ 314 (359)
T d1goxa_ 293 DVFKALALGAAGVFIGRPVVFS 314 (359)
T ss_dssp HHHHHHHHTCSEEEECHHHHHH
T ss_pred HHHHHHHcCCCEEEEcHHHHHH
Confidence 9999999999999999999854
|
| >d1v5xa_ c.1.2.4 (A:) N-(5'phosphoribosyl)antranilate isomerase, PRAI {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Ribulose-phoshate binding barrel family: Tryptophan biosynthesis enzymes domain: N-(5'phosphoribosyl)antranilate isomerase, PRAI species: Thermus thermophilus [TaxId: 274]
Probab=99.15 E-value=3.1e-10 Score=96.21 Aligned_cols=164 Identities=19% Similarity=0.203 Sum_probs=112.8
Q ss_pred CCCcHHHHHHHHhCC--CceeecC---CCCCCHHHHHHHHHHHHhhcCCcEEEEeecCCCCHHHHHHHHhcCCcEEEEcc
Q 020013 21 DISGPELVAAVANAG--GLGLLRA---PDWEAPDYLRDLIRKTRSLTERPFGVGVVLAFPHNENIKAILSEKVAVLQVSW 95 (332)
Q Consensus 21 g~s~~~la~avs~aG--glG~i~~---~~~~~~e~~~~~i~~~r~~~~~p~gvnl~~~~~~~~~~~~~~~~~~~~I~~~~ 95 (332)
|+++++.+..+.++| .+||+.. +++.+++..+++.+.++ .....|.++++.+.++..+.+...++++|++|
T Consensus 7 Git~~ed~~~~~~~gad~iGfif~~~SpR~vs~~~a~~i~~~~~---~~~~~V~Vf~~~~~~~i~~~~~~~~~d~vQlH- 82 (200)
T d1v5xa_ 7 GITRLEDALLAEALGAFALGFVLAPGSRRRIAPEAARAIGEALG---PFVVRVGVFRDQPPEEVLRLMEEARLQVAQLH- 82 (200)
T ss_dssp CCCCHHHHHHHHHHTCSEEEEECCTTCTTBCCHHHHHHHHHHSC---SSSEEEEEESSCCHHHHHHHHHHTTCSEEEEC-
T ss_pred CCCcHHHHHHHHhCCCCEEEEEcCCCCCCCcCHHHHHHHHHhhc---Cceeeeeeeeechhhhhhhhhccccccccccc-
Confidence 689999999998887 5999874 45678887766655443 33466888888776666677777899999999
Q ss_pred CCCcHHHHHHHHhCCCEEEEecC--CHHHHHHHHHcCCCEEEEecCCCCcccCCCCchhhhHHHHHHHhCCCCCcEEeec
Q 020013 96 GEYSEELVLEAHSAGVKVVPQVG--SFDEARKAVNAGVDAIIVQGREAGGHVIGQDGLISLLPMVVDLIGDRDIPIIAAG 173 (332)
Q Consensus 96 g~~~~~~i~~~~~~g~~v~~~v~--s~~~a~~a~~~g~D~ivv~G~eaGGh~~~~~~~~~ll~~i~~~~~~~~iPviaaG 173 (332)
|.++.+.++.++. ..+++..+. +... .......+|++++.....|+.. +....|. ..... . ..|++.||
T Consensus 83 g~e~~~~~~~l~~-~~~iik~~~~~~~~~-~~~~~~~~~~~L~D~~~~g~g~-~~~~~~~--~~~~~-~---~~~~~LAG 153 (200)
T d1v5xa_ 83 GEEPPEWAEAVGR-FYPVIKAFPLEGPAR-PEWADYPAQALLLDGKRPGSGE-AYPRAWA--KPLLA-T---GRRVILAG 153 (200)
T ss_dssp SCCCHHHHHHHTT-TSCEEEEEECSSSCC-GGGGGSSCSEEEEECSSTTSCC-CCCGGGG--HHHHH-T---TSCEEECS
T ss_pred ccCCHHHHHHHhh-ccccceeeccCchhh-HHHhhcchhheeecccccCccc-ccchHHH--hhhhh-c---cCceEecC
Confidence 6667888887754 344443322 1111 1233457999999876443221 2222232 22222 1 57999999
Q ss_pred CcCCHHHHHHHHHcCcceeeecccc
Q 020013 174 GIVDARGYVAALSLGAQGICLGTRF 198 (332)
Q Consensus 174 GI~~~~~v~~al~~GA~gV~~GT~f 198 (332)
|| +++|+.+++..++.||-+-|.+
T Consensus 154 Gl-~~~Nv~~~~~~~p~gvDvsSGv 177 (200)
T d1v5xa_ 154 GI-APENLEEVLALRPYALDLASGV 177 (200)
T ss_dssp SC-CSTTHHHHHHHCCSEEEESGGG
T ss_pred CC-CHHHHHHHHhcCCCEEEEcCce
Confidence 99 8999999999999999998886
|
| >d1piia1 c.1.2.4 (A:255-452) N-(5'phosphoribosyl)antranilate isomerase, PRAI {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Ribulose-phoshate binding barrel family: Tryptophan biosynthesis enzymes domain: N-(5'phosphoribosyl)antranilate isomerase, PRAI species: Escherichia coli [TaxId: 562]
Probab=99.06 E-value=2.5e-10 Score=96.65 Aligned_cols=162 Identities=20% Similarity=0.194 Sum_probs=111.9
Q ss_pred CCCcHHHHHHHHhCC--CceeecC---CCCCCHHHHHHHHHHHHhhcCCcEEEEeecCCCCHHHHHHHHhcCCcEEEEcc
Q 020013 21 DISGPELVAAVANAG--GLGLLRA---PDWEAPDYLRDLIRKTRSLTERPFGVGVVLAFPHNENIKAILSEKVAVLQVSW 95 (332)
Q Consensus 21 g~s~~~la~avs~aG--glG~i~~---~~~~~~e~~~~~i~~~r~~~~~p~gvnl~~~~~~~~~~~~~~~~~~~~I~~~~ 95 (332)
|+++++.+..++++| .+||+.. +++.+++..+++++.++ +..|.++++...++..+.+...++++|++|
T Consensus 7 GIt~~~d~~~~~~~gaD~iGfif~~~SpR~Vs~~~a~~i~~~~~-----~~~V~Vfv~~~~~~i~~~~~~~~~d~iQlH- 80 (198)
T d1piia1 7 GLTRGQDAKAAYDAGAIYGGLIFVATSPRCVNVEQAQEVMAAAP-----LQYVGVFRNHDIADVVDKAKVLSLAAVQLH- 80 (198)
T ss_dssp CCCSHHHHHHHHHHTCSEEEEECCTTCTTBCCHHHHHHHHHHCC-----CEEEEEESSCCHHHHHHHHHHHTCSEEEEC-
T ss_pred CCCcHHHHHHHHhCCCCEEEEEccCCCCCCcCHHHHHHhhhhcc-----cccceeeeccchhhHHHhhhcccccceeec-
Confidence 689999999998887 5999863 45678888777655432 456777887765555666777899999999
Q ss_pred CCCcHHHHHHHHhC---CCEEEEecCCHHHHHH-HHHcCCCEEEEecCCCCcccCCCCchhhhHHHHHHHhCCCCCcEEe
Q 020013 96 GEYSEELVLEAHSA---GVKVVPQVGSFDEARK-AVNAGVDAIIVQGREAGGHVIGQDGLISLLPMVVDLIGDRDIPIIA 171 (332)
Q Consensus 96 g~~~~~~i~~~~~~---g~~v~~~v~s~~~a~~-a~~~g~D~ivv~G~eaGGh~~~~~~~~~ll~~i~~~~~~~~iPvia 171 (332)
|.++++.++.+++. .+.++.... ..+... .....+|.+++.+.. ||. |....|.++.. . ...|++.
T Consensus 81 G~e~~~~~~~l~~~~~~~~~~~~~~~-~~~~~~~~~~~~~d~~lld~~~-gGt--G~~fdw~~~~~----~--~~~~~~L 150 (198)
T d1piia1 81 GNEEQLYIDTLREALPAHVAIWKALS-VGETLPAREFQHVDKYVLDNGQ-GGS--GQRFDWSLLNG----Q--SLGNVLL 150 (198)
T ss_dssp SCCCHHHHHHHHHHSCTTSEEEEEEE-CSSSCCCCCCTTCCEEEEESCS-CCS--SCCCCGGGGTT----S--CCTTEEE
T ss_pred CCccHHHHHHHhccccccccceeccc-hhhhhhHHHhhhhcccccCCcc-ccc--ceeeehhhhcc----c--ccceeEE
Confidence 66677888888764 333443221 111110 112357899887653 443 34455776542 1 1569999
Q ss_pred ecCcCCHHHHHHHHHcCcceeeeccccc
Q 020013 172 AGGIVDARGYVAALSLGAQGICLGTRFV 199 (332)
Q Consensus 172 aGGI~~~~~v~~al~~GA~gV~~GT~fl 199 (332)
|||| +++|+.+++..++.||-+-|.+=
T Consensus 151 AGGl-~~~Nv~~a~~~~p~gvDvsSGvE 177 (198)
T d1piia1 151 AGGL-GADNCVEAAQTGCAGLDFNSAVE 177 (198)
T ss_dssp ESSC-CTTTHHHHHTTCCSEEEECGGGE
T ss_pred ecCC-CHHHHHHHHhcCCCEEEeCCccc
Confidence 9999 89999999999999999988753
|
| >d1geqa_ c.1.2.4 (A:) Trp synthase alpha-subunit {Archaeon Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Ribulose-phoshate binding barrel family: Tryptophan biosynthesis enzymes domain: Trp synthase alpha-subunit species: Archaeon Pyrococcus furiosus [TaxId: 2261]
Probab=99.06 E-value=1.9e-09 Score=93.80 Aligned_cols=152 Identities=13% Similarity=0.066 Sum_probs=103.5
Q ss_pred CHHHHHHHHHHHHhhcCCcEEE----EeecCCCCHHHHHHHHhcCCcEEEEccCCCcH---HHHHHHHhCCCEEEEecC-
Q 020013 47 APDYLRDLIRKTRSLTERPFGV----GVVLAFPHNENIKAILSEKVAVLQVSWGEYSE---ELVLEAHSAGVKVVPQVG- 118 (332)
Q Consensus 47 ~~e~~~~~i~~~r~~~~~p~gv----nl~~~~~~~~~~~~~~~~~~~~I~~~~g~~~~---~~i~~~~~~g~~v~~~v~- 118 (332)
+.+.+-++++++|+..+.|+-+ |.+.....+++++.+.+.|++.+.+. ..|++ ++.+.+++.|+..+.-++
T Consensus 64 ~~~~~~~~~~~~r~~~~~pivlm~Y~N~i~~~G~~~f~~~~~~~Gv~Gliip-DLP~eE~~~~~~~~~~~gl~~I~lvaP 142 (248)
T d1geqa_ 64 KLREAFWIVKEFRRHSSTPIVLMTYYNPIYRAGVRNFLAEAKASGVDGILVV-DLPVFHAKEFTEIAREEGIKTVFLAAP 142 (248)
T ss_dssp CHHHHHHHHHHHHTTCCCCEEEEECHHHHHHHCHHHHHHHHHHHTCCEEEET-TCCGGGHHHHHHHHHHHTCEEEEEECT
T ss_pred cHHHHHHHHHHHhhcCCCcEEEEeccccccccCHHHHhhhhcccCeeEEecc-CCcHHHHHHHHhhccccCcceEEEecc
Confidence 5566777888888777777654 33222234678889999999999987 44333 466677888988775543
Q ss_pred --CHHHHHHHHHcCCCEEEEecCCC-Cccc-CCCCchhhhHHHHHHHhCCCCCcEEeecCcCCHHHHHHHHHcCcceeee
Q 020013 119 --SFDEARKAVNAGVDAIIVQGREA-GGHV-IGQDGLISLLPMVVDLIGDRDIPIIAAGGIVDARGYVAALSLGAQGICL 194 (332)
Q Consensus 119 --s~~~a~~a~~~g~D~ivv~G~ea-GGh~-~~~~~~~~ll~~i~~~~~~~~iPviaaGGI~~~~~v~~al~~GA~gV~~ 194 (332)
+.+..+...+..-.+|-+....+ .|-. .-......++.++++.. ++|+++..||++++++.+++..|||||++
T Consensus 143 tt~~~ri~~i~~~s~gFiY~vs~~GvTG~~~~~~~~~~~~v~~vk~~t---~~Pv~vGFGI~~~e~v~~~~~~~ADGvIV 219 (248)
T d1geqa_ 143 NTPDERLKVIDDMTTGFVYLVSLYGTTGAREEIPKTAYDLLRRAKRIC---RNKVAVGFGVSKREHVVSLLKEGANGVVV 219 (248)
T ss_dssp TCCHHHHHHHHHHCSSEEEEECCC-------CCCHHHHHHHHHHHHHC---SSCEEEESCCCSHHHHHHHHHTTCSEEEE
T ss_pred cchhHHHHHHHhcCCCeEEEEecccccccchhhhhhHHHHHHHHhhhc---ccceeeecccCCHHHHHHHHhcCCCEEEE
Confidence 34455555555445555433311 1211 01123466778888775 79999999999999999999999999999
Q ss_pred ccccccCc
Q 020013 195 GTRFVASE 202 (332)
Q Consensus 195 GT~fl~t~ 202 (332)
||+|+..-
T Consensus 220 GSaiv~~i 227 (248)
T d1geqa_ 220 GSALVKII 227 (248)
T ss_dssp CHHHHHHH
T ss_pred CHHHHHHH
Confidence 99998654
|
| >d1juba_ c.1.4.1 (A:) Dihydroorotate dehydrogenase {Lactococcus lactis, isozyme A [TaxId: 1358]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: FMN-linked oxidoreductases family: FMN-linked oxidoreductases domain: Dihydroorotate dehydrogenase species: Lactococcus lactis, isozyme A [TaxId: 1358]
Probab=99.00 E-value=4.9e-09 Score=94.52 Aligned_cols=192 Identities=15% Similarity=0.117 Sum_probs=114.5
Q ss_pred hhcC--CccceecCCCCCCCCcHHHHHHHHhCCCceeecCCCC----------------------------CCHHHHHHH
Q 020013 5 GMLG--FEYGIVQAPLGPDISGPELVAAVANAGGLGLLRAPDW----------------------------EAPDYLRDL 54 (332)
Q Consensus 5 ~~l~--~~~Pii~apM~~g~s~~~la~avs~aGglG~i~~~~~----------------------------~~~e~~~~~ 54 (332)
+++| ++.||+.+... ...+.+.+.....+| +|++..++. ...+...+.
T Consensus 5 ~~~Gl~l~nPi~~aag~-~~~~~~~~~~~~~~G-~G~vv~ktit~~~~~gn~~pr~~~~~~~~~n~~G~~n~g~~~~~~~ 82 (311)
T d1juba_ 5 TFANAKFANPFMNASGV-HCMTIEDLEELKASQ-AGAYITKSSTLEKREGNPLPRYVDLELGSINSMGLPNLGFDYYLDY 82 (311)
T ss_dssp EETTEEESSSEEECTTS-SCSSHHHHHHHHHSS-CSCCBCCCBCSSCBCCSCSCCEEEETTEEEECCCCCBSCHHHHHHH
T ss_pred EECCEecCCCCEECCCC-CCCCHHHHHHHHHCC-CcEEEEEEEeeccccCCCCCeEEEccccchhhhhhcCchhHHHHHH
Confidence 3444 56899998753 346888888888775 455432210 011233333
Q ss_pred -HHHHHh-hcCCcEEEEeecCCCC--HHHHHHHHhcC-CcEEEEccCCC-----------cH---HHHHHHHh-CCCEEE
Q 020013 55 -IRKTRS-LTERPFGVGVVLAFPH--NENIKAILSEK-VAVLQVSWGEY-----------SE---ELVLEAHS-AGVKVV 114 (332)
Q Consensus 55 -i~~~r~-~~~~p~gvnl~~~~~~--~~~~~~~~~~~-~~~I~~~~g~~-----------~~---~~i~~~~~-~g~~v~ 114 (332)
.+..++ ..+.|+.+++...... .+..+.+...+ ++++.+++.+| +. ++++.+++ ...+++
T Consensus 83 ~~~~~~~~~~~~pvi~si~~~~~~~~~~~~~~~~~~~~ad~ielNiscPn~~~~~~~~~~~~~~~~~~~~v~~~~~~pv~ 162 (311)
T d1juba_ 83 VLKNQKENAQEGPIFFSIAGMSAAENIAMLKKIQESDFSGITELNLSCPNVPGEPQLAYDFEATEKLLKEVFTFFTKPLG 162 (311)
T ss_dssp HHHHHHHTCSSSCCEEEECCSSHHHHHHHHHHHHHSCCCSEEEEESCCCCSSSCCCGGGCHHHHHHHHHHHTTTCCSCEE
T ss_pred HHHhhhhcccCCCceeeccccccchhHHHHHHHhhccccceeeeccccccccccccccccHHHHHHHHHHhhccccccee
Confidence 333333 2467999998775432 12333344444 88998876543 12 23333333 356677
Q ss_pred EecC---CHHH----HHHHHHcCCCEEEEecC--------------------CCCcccCCCC---chhhhHHHHHHHhCC
Q 020013 115 PQVG---SFDE----ARKAVNAGVDAIIVQGR--------------------EAGGHVIGQD---GLISLLPMVVDLIGD 164 (332)
Q Consensus 115 ~~v~---s~~~----a~~a~~~g~D~ivv~G~--------------------eaGGh~~~~~---~~~~ll~~i~~~~~~ 164 (332)
.+.. +..+ +..+.+.++|.+...+. ..||.. +.. ..+..+.++++...
T Consensus 163 vKl~p~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~gG~s-g~~l~~~al~~i~~i~~~~~- 240 (311)
T d1juba_ 163 VKLPPYFDLVHFDIMAEILNQFPLTYVNSVNSIGNGLFIDPEAESVVIKPKDGFGGIG-GAYIKPTALANVRAFYTRLK- 240 (311)
T ss_dssp EEECCCCSHHHHHHHHHHHTTSCCCEEEECCCEEEEECEETTTTEESCSGGGGEEEEE-SGGGHHHHHHHHHHHHTTSC-
T ss_pred ecccccchhhHHHHHHHHHHhhccceEeccccccccccccccccccccccccccCCcc-ccccCchHHHHHHHHHHhcC-
Confidence 6554 2222 33455678888876331 013332 211 12444556655543
Q ss_pred CCCcEEeecCcCCHHHHHHHHHcCcceeeecccccc
Q 020013 165 RDIPIIAAGGIVDARGYVAALSLGAQGICLGTRFVA 200 (332)
Q Consensus 165 ~~iPviaaGGI~~~~~v~~al~~GA~gV~~GT~fl~ 200 (332)
.++|||+.|||.|++|+.+++.+|||.||++|+++.
T Consensus 241 ~~~~Iig~GGI~s~~Da~~~i~aGA~~Vql~tal~~ 276 (311)
T d1juba_ 241 PEIQIIGTGGIETGQDAFEHLLCGATMLQIGTALHK 276 (311)
T ss_dssp TTSEEEEESSCCSHHHHHHHHHHTCSEEEECHHHHH
T ss_pred CCeeEEecCCcCCHHHHHHHHHcCCCceeeeHhhHh
Confidence 269999999999999999999999999999999875
|
| >d1qopa_ c.1.2.4 (A:) Trp synthase alpha-subunit {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Ribulose-phoshate binding barrel family: Tryptophan biosynthesis enzymes domain: Trp synthase alpha-subunit species: Salmonella typhimurium [TaxId: 90371]
Probab=98.97 E-value=1e-08 Score=90.19 Aligned_cols=154 Identities=18% Similarity=0.142 Sum_probs=103.3
Q ss_pred CHHHHHHHHHHHHhh-cCCcEEE----EeecCCCCHHHHHHHHhcCCcEEEEccCCCc---HHHHHHHHhCCCEEEEecC
Q 020013 47 APDYLRDLIRKTRSL-TERPFGV----GVVLAFPHNENIKAILSEKVAVLQVSWGEYS---EELVLEAHSAGVKVVPQVG 118 (332)
Q Consensus 47 ~~e~~~~~i~~~r~~-~~~p~gv----nl~~~~~~~~~~~~~~~~~~~~I~~~~g~~~---~~~i~~~~~~g~~v~~~v~ 118 (332)
+.+.+-+.++++|+. .+.|+-+ |.+.....+.+++.+.+.|++.+.+. ..|+ .++.+.+++.|+..+.-++
T Consensus 77 ~~~~~~~~~~~~r~~~~~~pivlm~Y~N~i~~~G~~~f~~~~~~~Gv~Gliip-DlP~ee~~~~~~~~~~~~l~~I~lva 155 (267)
T d1qopa_ 77 TPAQCFEMLAIIREKHPTIPIGLLMYANLVFNNGIDAFYARCEQVGVDSVLVA-DVPVEESAPFRQAALRHNIAPIFICP 155 (267)
T ss_dssp CHHHHHHHHHHHHHHCSSSCEEEEECHHHHHTTCHHHHHHHHHHHTCCEEEET-TCCGGGCHHHHHHHHHTTCEEECEEC
T ss_pred hhhhhhhhhhhhcccccccceEEEeeccchhhcCchHHHHHHHhcCCCceecc-chhhhhhHHHHHhhhccCceEEEEec
Confidence 445566677777765 3567654 33333344678899999999999987 4433 3567778889987765443
Q ss_pred ---CHHHHHHHHHcCCCEEEEecC-CCCcccC-CCCchhhhHHHHHHHhCCCCCcEEeecCcCCHHHHHHHHHcCcceee
Q 020013 119 ---SFDEARKAVNAGVDAIIVQGR-EAGGHVI-GQDGLISLLPMVVDLIGDRDIPIIAAGGIVDARGYVAALSLGAQGIC 193 (332)
Q Consensus 119 ---s~~~a~~a~~~g~D~ivv~G~-eaGGh~~-~~~~~~~ll~~i~~~~~~~~iPviaaGGI~~~~~v~~al~~GA~gV~ 193 (332)
+.+..+...+..-.+|-+... .-.|-.. .......++..+++.. ++||++..||++++++++++..|||||+
T Consensus 156 Ptt~~~Ri~~i~~~a~gFiY~vs~~GvTG~~~~~~~~~~~~i~~ik~~t---~~Pv~vGFGI~~~e~v~~~~~~~ADGvI 232 (267)
T d1qopa_ 156 PNADDDLLRQVASYGRGYTYLLSRSGVTGAENRGALPLHHLIEKLKEYH---AAPALQGFGISSPEQVSAAVRAGAAGAI 232 (267)
T ss_dssp TTCCHHHHHHHHHHCCSCEEEESSSSCCCSSSCC--CCHHHHHHHHHTT---CCCEEEESSCCSHHHHHHHHHTTCSEEE
T ss_pred ccccHHHHHHHHhhCchhhhhhcccccCCcccccchhHHHHHHHHhhhc---cCCceeecccCCHHHHHHHHhcCCCEEE
Confidence 444455555554444433222 1122210 1123456777877765 8999999999999999999999999999
Q ss_pred eccccccCccC
Q 020013 194 LGTRFVASEES 204 (332)
Q Consensus 194 ~GT~fl~t~Es 204 (332)
+||+|+..-|.
T Consensus 233 VGSAivk~i~~ 243 (267)
T d1qopa_ 233 SGSAIVKIIEK 243 (267)
T ss_dssp ECHHHHHHHHH
T ss_pred ECHHHHHHHHh
Confidence 99999876443
|
| >d1vc4a_ c.1.2.4 (A:) Indole-3-glycerophosphate synthase, IPGS {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Ribulose-phoshate binding barrel family: Tryptophan biosynthesis enzymes domain: Indole-3-glycerophosphate synthase, IPGS species: Thermus thermophilus [TaxId: 274]
Probab=98.97 E-value=1.4e-08 Score=87.96 Aligned_cols=170 Identities=15% Similarity=0.139 Sum_probs=117.1
Q ss_pred HHHHHHHHhCCC--ceeecCCCC--CCHHHHHHHHHHHHhhcCCcEEEEeecCCCCHHHHHHHHhcCCcEEEEccC---C
Q 020013 25 PELVAAVANAGG--LGLLRAPDW--EAPDYLRDLIRKTRSLTERPFGVGVVLAFPHNENIKAILSEKVAVLQVSWG---E 97 (332)
Q Consensus 25 ~~la~avs~aGg--lG~i~~~~~--~~~e~~~~~i~~~r~~~~~p~gvnl~~~~~~~~~~~~~~~~~~~~I~~~~g---~ 97 (332)
.+++....++|. +.++....+ -+.+. +..+++.++.|+-..=|+. ++.++..+...|+|+|.+... .
T Consensus 68 ~~~A~~y~~~GA~aiSVLTe~~~F~Gs~~d----l~~v~~~~~iPvLrKDFIi--d~~QI~ea~~~GADaVLLIaall~~ 141 (254)
T d1vc4a_ 68 VEAALAYARGGARAVSVLTEPHRFGGSLLD----LKRVREAVDLPLLRKDFVV--DPFMLEEARAFGASAALLIVALLGE 141 (254)
T ss_dssp HHHHHHHHHTTCSEEEEECCCSSSCCCHHH----HHHHHHHCCSCEEEESCCC--SHHHHHHHHHTTCSEEEEEHHHHGG
T ss_pred HHHHHHHHhcCCceEEEEcCcccccccHHH----HHHHHHHcCCCcccCCccc--cHHHHHHHHhccchHHHHHHHHHHH
Confidence 456666666663 555543322 24444 4566666778876654443 356788889999999987532 2
Q ss_pred CcHHHHHHHHhCCCEEEEecCCHHHHHHHHHcCCCEEEEecCCCCcccCCCCchhhhHHHHHHHhCCCCCcEEeecCcCC
Q 020013 98 YSEELVLEAHSAGVKVVPQVGSFDEARKAVNAGVDAIIVQGREAGGHVIGQDGLISLLPMVVDLIGDRDIPIIAAGGIVD 177 (332)
Q Consensus 98 ~~~~~i~~~~~~g~~v~~~v~s~~~a~~a~~~g~D~ivv~G~eaGGh~~~~~~~~~ll~~i~~~~~~~~iPviaaGGI~~ 177 (332)
...++++..+..|+.++..|++.+|+..+.+.|++.|-+.++.--........+..+.+.+.+.. .++.+|+.+||.+
T Consensus 142 ~l~~l~~~A~~lgl~~LVEvh~~~El~~a~~~~a~iIGINnRdL~t~~vd~~~~~~l~~~i~~~~--~~~i~IsESGI~~ 219 (254)
T d1vc4a_ 142 LTGAYLEEARRLGLEALVEVHTERELEIALEAGAEVLGINNRDLATLHINLETAPRLGRLARKRG--FGGVLVAESGYSR 219 (254)
T ss_dssp GHHHHHHHHHHHTCEEEEEECSHHHHHHHHHHTCSEEEEESBCTTTCCBCTTHHHHHHHHHHHTT--CCSEEEEESCCCS
T ss_pred HHHHHHHHHHHhCCceEEEeccHHHHhhhhcCCCCEEEEeccchhhhhcchHHHHHhhhcccccC--CCCEEEEccCCCC
Confidence 23356677778899999999999999999999999999987643322111122233333333322 2578999999999
Q ss_pred HHHHHHHHHcCcceeeeccccccCcc
Q 020013 178 ARGYVAALSLGAQGICLGTRFVASEE 203 (332)
Q Consensus 178 ~~~v~~al~~GA~gV~~GT~fl~t~E 203 (332)
++++.. +..|+|||.+|+++|.++.
T Consensus 220 ~~dv~~-l~~g~davLIGesLm~~~d 244 (254)
T d1vc4a_ 220 KEELKA-LEGLFDAVLIGTSLMRAPD 244 (254)
T ss_dssp HHHHHT-TTTTCSEEEECHHHHTSSC
T ss_pred HHHHHH-HHcCCCEEEEChhhcCCCC
Confidence 999865 5789999999999997754
|
| >d1piia2 c.1.2.4 (A:1-254) Indole-3-glycerophosphate synthase, IPGS {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Ribulose-phoshate binding barrel family: Tryptophan biosynthesis enzymes domain: Indole-3-glycerophosphate synthase, IPGS species: Escherichia coli [TaxId: 562]
Probab=98.96 E-value=1.3e-08 Score=88.14 Aligned_cols=169 Identities=17% Similarity=0.260 Sum_probs=116.9
Q ss_pred CcHHHHHHHHhCCC--ceeecCCCC--CCHHHHHHHHHHHHhhcCCcEEEEeecCCCCHHHHHHHHhcCCcEEEEccCCC
Q 020013 23 SGPELVAAVANAGG--LGLLRAPDW--EAPDYLRDLIRKTRSLTERPFGVGVVLAFPHNENIKAILSEKVAVLQVSWGEY 98 (332)
Q Consensus 23 s~~~la~avs~aGg--lG~i~~~~~--~~~e~~~~~i~~~r~~~~~p~gvnl~~~~~~~~~~~~~~~~~~~~I~~~~g~~ 98 (332)
.+|..++...+.|+ +.++....| -+.+. ++.+++.++.|+--.=|+. ++.++..+...|+|+|.+-....
T Consensus 68 ~~p~~~a~~~~~gA~aiSVLTe~~~F~Gs~~~----l~~v~~~~~~PiLrKDFIi--d~~QI~ear~~GADavLLI~~~L 141 (254)
T d1piia2 68 FDPARIAAIYKHYASAISVLTDEKYFQGSFNF----LPIVSQIAPQPILCKDFII--DPYQIYLARYYQADACLLMLSVL 141 (254)
T ss_dssp CCHHHHHHHHTTTCSEEEEECCSTTTCCCTTH----HHHHHHHCCSCEEEESCCC--SHHHHHHHHHTTCSEEEEETTTC
T ss_pred chhHHHHHHHHhccCceEEecccccCCCCHHH----HHHHHhccccccchhcccC--cHHHHHHHHhhccchhhhhHhhh
Confidence 35666666665553 444433222 13444 4556666777865543443 35678888899999998865544
Q ss_pred cH----HHHHHHHhCCCEEEEecCCHHHHHHHHHcCCCEEEEecCCCCcccCCCCchhhhHHHHHHHhCCCCCcEEeecC
Q 020013 99 SE----ELVLEAHSAGVKVVPQVGSFDEARKAVNAGVDAIIVQGREAGGHVIGQDGLISLLPMVVDLIGDRDIPIIAAGG 174 (332)
Q Consensus 99 ~~----~~i~~~~~~g~~v~~~v~s~~~a~~a~~~g~D~ivv~G~eaGGh~~~~~~~~~ll~~i~~~~~~~~iPviaaGG 174 (332)
.+ ++.+..+..|+.++..|++.+|+..+.+.|++.|-+.++.--........+..+.+. ++. ++.+|+.+|
T Consensus 142 ~~~~l~~l~~~a~~lgl~~LVEvh~~~El~~a~~~~a~iIGINnRnL~tf~vd~~~t~~L~~~----ip~-~~~~VsESG 216 (254)
T d1piia2 142 DDDQYRQLAAVAHSLEMGVLTEVSNEEEQERAIALGAKVVGINNRDLRDLSIDLNRTRELAPK----LGH-NVTVISESG 216 (254)
T ss_dssp CHHHHHHHHHHHHHTTCEEEEEECSHHHHHHHHHTTCSEEEEESEETTTTEECTHHHHHHHHH----HCT-TSEEEEESC
T ss_pred cccHHHHHHHHHHHHhhhHHHhhccHHHHHHHHhhcccccCccccchhhhhhhhHHHHHHHHh----CCC-CCEEEEcCC
Confidence 43 455667788999999999999999999999999998776432211011123444443 332 678999999
Q ss_pred cCCHHHHHHHHHcCcceeeeccccccCcc
Q 020013 175 IVDARGYVAALSLGAQGICLGTRFVASEE 203 (332)
Q Consensus 175 I~~~~~v~~al~~GA~gV~~GT~fl~t~E 203 (332)
|.+++++.. +..|+|+|.+|+.+|.++.
T Consensus 217 I~~~~d~~~-l~~g~davLiGeslm~~~d 244 (254)
T d1piia2 217 INTYAQVRE-LSHFANGFLIGSALMAHDD 244 (254)
T ss_dssp CCCHHHHHH-HTTTCSEEEECHHHHTCSC
T ss_pred CCCHHHHHH-HHcCCCEEEEChHHhCCCC
Confidence 999999976 5789999999999998765
|
| >d1h1ya_ c.1.2.2 (A:) D-ribulose-5-phosphate 3-epimerase {Rice (Oryza sativa) [TaxId: 4530]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Ribulose-phoshate binding barrel family: D-ribulose-5-phosphate 3-epimerase domain: D-ribulose-5-phosphate 3-epimerase species: Rice (Oryza sativa) [TaxId: 4530]
Probab=98.96 E-value=5.2e-09 Score=89.72 Aligned_cols=145 Identities=15% Similarity=0.205 Sum_probs=110.3
Q ss_pred HHHHHHHhhcCCcEEEEeecCCCCHHHHHHHHhcCCcEEEEccCC---CcHHHHHHHHhCCCEEEEecC---CHHHHHHH
Q 020013 53 DLIRKTRSLTERPFGVGVVLAFPHNENIKAILSEKVAVLQVSWGE---YSEELVLEAHSAGVKVVPQVG---SFDEARKA 126 (332)
Q Consensus 53 ~~i~~~r~~~~~p~gvnl~~~~~~~~~~~~~~~~~~~~I~~~~g~---~~~~~i~~~~~~g~~v~~~v~---s~~~a~~a 126 (332)
+.++.++..++.|+-+++++..| ..+++...+.+++.|.+|... +..++++.+++.|+++..... +.+.....
T Consensus 49 ~~i~~i~~~~~~~~dvHLMv~~p-~~~i~~~~~~g~~~I~~H~E~~~~~~~~~i~~i~~~g~~~Glal~p~t~~~~~~~~ 127 (220)
T d1h1ya_ 49 PVIQSLRKHTKAYLDCHLMVTNP-SDYVEPLAKAGASGFTFHIEVSRDNWQELIQSIKAKGMRPGVSLRPGTPVEEVFPL 127 (220)
T ss_dssp HHHHHHHTTCCSEEEEEEESSCG-GGGHHHHHHHTCSEEEEEGGGCTTTHHHHHHHHHHTTCEEEEEECTTSCGGGGHHH
T ss_pred hhhhhhhhhcchhhhhHHHhcch-hhhhHHhhhcccceeeecccccchhHHHHHHHHHHcCCCcceeeccccchhHHHHH
Confidence 34677788889999999999887 578888999999999998642 234677888999998775543 45555555
Q ss_pred HH--cCCCEEEEecC--CCCcccCCCCchhhhHHHHHHHhCCCCCcEEeecCcCCHHHHHHHHHcCcceeeeccccccCc
Q 020013 127 VN--AGVDAIIVQGR--EAGGHVIGQDGLISLLPMVVDLIGDRDIPIIAAGGIVDARGYVAALSLGAQGICLGTRFVASE 202 (332)
Q Consensus 127 ~~--~g~D~ivv~G~--eaGGh~~~~~~~~~ll~~i~~~~~~~~iPviaaGGI~~~~~v~~al~~GA~gV~~GT~fl~t~ 202 (332)
.. ..+|+|++-.. ..+|.. .....+..+.++++... ++++.+.||| +.+++..+..+|||.+++||+++..+
T Consensus 128 l~~~~~~d~vlim~v~PG~~GQ~-f~~~~l~kI~~l~~~~~--~~~I~VDGGI-n~~~i~~l~~aGad~~V~GS~if~~~ 203 (220)
T d1h1ya_ 128 VEAENPVELVLVMTVEPGFGGQK-FMPEMMEKVRALRKKYP--SLDIEVDGGL-GPSTIDVAASAGANCIVAGSSIFGAA 203 (220)
T ss_dssp HHSSSCCSEEEEESSCTTCSSCC-CCGGGHHHHHHHHHHCT--TSEEEEESSC-STTTHHHHHHHTCCEEEESHHHHTSS
T ss_pred HhcccccceEEEEecCCCCcccc-cchhhhHHHHHHHhcCC--CceEEEEecC-CHHHHHHHHHCCCCEEEECHHHHCCC
Confidence 54 35899988644 445554 23356777777776543 6899999999 78999999999999999999977643
|
| >d1rd5a_ c.1.2.4 (A:) Trp synthase alpha-subunit {Maize (Zea mays) [TaxId: 4577]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Ribulose-phoshate binding barrel family: Tryptophan biosynthesis enzymes domain: Trp synthase alpha-subunit species: Maize (Zea mays) [TaxId: 4577]
Probab=98.95 E-value=5.7e-09 Score=91.48 Aligned_cols=155 Identities=15% Similarity=0.140 Sum_probs=103.4
Q ss_pred CCHHHHHHHHHHHHhhcCCcEEEEeecCCCCHHHHHHHHhcCCcEEEEccCCC---cHHHHHHHHhCCCEEEEecC---C
Q 020013 46 EAPDYLRDLIRKTRSLTERPFGVGVVLAFPHNENIKAILSEKVAVLQVSWGEY---SEELVLEAHSAGVKVVPQVG---S 119 (332)
Q Consensus 46 ~~~e~~~~~i~~~r~~~~~p~gvnl~~~~~~~~~~~~~~~~~~~~I~~~~g~~---~~~~i~~~~~~g~~v~~~v~---s 119 (332)
.+.+.+-+.++++|+..+.|+-+-..++.-....++.+.+.|++.+.+. +.| ..++.+.+++.|+..+.-++ +
T Consensus 76 ~~~~~~~~~~~~~r~~~~~p~ilm~Y~n~~~~~~~~~~~~~GvdG~Iip-Dlp~eE~~~~~~~~~~~gl~~I~lvaPtt~ 154 (261)
T d1rd5a_ 76 TTMDAVLEMLREVTPELSCPVVLLSYYKPIMFRSLAKMKEAGVHGLIVP-DLPYVAAHSLWSEAKNNNLELVLLTTPAIP 154 (261)
T ss_dssp CCHHHHHHHHHHHGGGCSSCEEEECCSHHHHSCCTHHHHHTTCCEEECT-TCBTTTHHHHHHHHHHTTCEECEEECTTSC
T ss_pred cchhhhhhhhhcccccccCceeeeeeecchhhHHHHHHHhcCceeeeec-CccHHHHHHHHHHHhccccceEEEeccCCc
Confidence 3556677788888876667765432222111123566788999999886 332 34667788889987665443 4
Q ss_pred HHHHHHHHHcCCCEEEEecCC-CCc-ccCCCCchhhhHHHHHHHhCCCCCcEEeecCcCCHHHHHHHHHcCcceeeeccc
Q 020013 120 FDEARKAVNAGVDAIIVQGRE-AGG-HVIGQDGLISLLPMVVDLIGDRDIPIIAAGGIVDARGYVAALSLGAQGICLGTR 197 (332)
Q Consensus 120 ~~~a~~a~~~g~D~ivv~G~e-aGG-h~~~~~~~~~ll~~i~~~~~~~~iPviaaGGI~~~~~v~~al~~GA~gV~~GT~ 197 (332)
.+..++..+..-.+|-+.... -.| ..........++..+++.. ++||++..||.+++++.++...|||||++||+
T Consensus 155 ~~Ri~~i~~~a~gFvY~vs~~GvTG~~~~~~~~~~~~i~~ik~~t---~~Pi~vGFGI~~~e~v~~~~~~gaDGvIVGSa 231 (261)
T d1rd5a_ 155 EDRMKEITKASEGFVYLVSVNGVTGPRANVNPRVESLIQEVKKVT---NKPVAVGFGISKPEHVKQIAQWGADGVIIGSA 231 (261)
T ss_dssp HHHHHHHHHHCCSCEEEECSSCCBCTTSCBCTHHHHHHHHHHHHC---SSCEEEESCCCSHHHHHHHHHTTCSEEEECHH
T ss_pred hhHHHHHHhcCcchhhhhhccCcccccccchhHHHHHHHHhhhcc---CCCeEEEcCCCCHHHHHHHHhcCCCEEEECHH
Confidence 555666666555555544331 122 2111223466777777765 79999999999999999999999999999999
Q ss_pred cccCccC
Q 020013 198 FVASEES 204 (332)
Q Consensus 198 fl~t~Es 204 (332)
|+..-|.
T Consensus 232 iv~~i~~ 238 (261)
T d1rd5a_ 232 MVRQLGE 238 (261)
T ss_dssp HHHHHHS
T ss_pred HHHHHHH
Confidence 9865543
|
| >d2flia1 c.1.2.2 (A:3-219) D-ribulose-5-phosphate 3-epimerase {Streptococcus pyogenes [TaxId: 1314]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Ribulose-phoshate binding barrel family: D-ribulose-5-phosphate 3-epimerase domain: D-ribulose-5-phosphate 3-epimerase species: Streptococcus pyogenes [TaxId: 1314]
Probab=98.91 E-value=4.8e-09 Score=89.74 Aligned_cols=144 Identities=14% Similarity=0.206 Sum_probs=107.6
Q ss_pred HHHHHHhhcCCcEEEEeecCCCCHHHHHHHHhcCCcEEEEccCC--CcHHHHHHHHhCCCEEEEecC---CHHHHHHHHH
Q 020013 54 LIRKTRSLTERPFGVGVVLAFPHNENIKAILSEKVAVLQVSWGE--YSEELVLEAHSAGVKVVPQVG---SFDEARKAVN 128 (332)
Q Consensus 54 ~i~~~r~~~~~p~gvnl~~~~~~~~~~~~~~~~~~~~I~~~~g~--~~~~~i~~~~~~g~~v~~~v~---s~~~a~~a~~ 128 (332)
.++.+++.++.|+-+++++..| ..+++.+.+.|++.|.+|+.. .+.+.++.+++.|+++...+. +++......
T Consensus 50 ~i~~i~~~t~~~~dvHLMv~~P-~~~i~~~~~~ga~~i~~H~E~~~~~~~~i~~i~~~g~~~Gial~p~T~~~~~~~~l- 127 (217)
T d2flia1 50 VVASMRKHSKLVFDCHLMVVDP-ERYVEAFAQAGADIMTIHTESTRHIHGALQKIKAAGMKAGVVINPGTPATALEPLL- 127 (217)
T ss_dssp HHHHHHTTCCSEEEEEEESSSG-GGGHHHHHHHTCSEEEEEGGGCSCHHHHHHHHHHTTSEEEEEECTTSCGGGGGGGT-
T ss_pred HHHHHHhcCCCceEeEEEecCH-HHHHHHHHHcCCcEEEeccccccCHHHHHHHHHhcCCeEEEEecCCcchhHHHhHH-
Confidence 3567788889999999999887 568999999999999998643 356888999999999876543 333333322
Q ss_pred cCCCEEEEecCCC--CcccCCCCchhhhHHHHHHHhC--CCCCcEEeecCcCCHHHHHHHHHcCcceeeeccccccC
Q 020013 129 AGVDAIIVQGREA--GGHVIGQDGLISLLPMVVDLIG--DRDIPIIAAGGIVDARGYVAALSLGAQGICLGTRFVAS 201 (332)
Q Consensus 129 ~g~D~ivv~G~ea--GGh~~~~~~~~~ll~~i~~~~~--~~~iPviaaGGI~~~~~v~~al~~GA~gV~~GT~fl~t 201 (332)
.-+|.|.+-+.+. +|.. .....+..+.++++..+ ..+++|.+.||| +.+++..+..+|||.+++||+++..
T Consensus 128 ~~id~vliM~V~pG~~Gq~-f~~~~~~ki~~l~~~~~~~~~~~~I~vDGGI-n~~~i~~l~~aGad~~V~Gsaif~~ 202 (217)
T d2flia1 128 DLVDQVLIMTVNPGFGGQA-FIPECLEKVATVAKWRDEKGLSFDIEVDGGV-DNKTIRACYEAGANVFVAGSYLFKA 202 (217)
T ss_dssp TTCSEEEEESSCTTCSSCC-CCGGGHHHHHHHHHHHHHTTCCCEEEEESSC-CTTTHHHHHHHTCCEEEESHHHHTS
T ss_pred hhcCEEEEEEEcCcccccc-cchhhHHHHHHHHHHHHhcCCCeEEEEeCCC-CHHHHHHHHHCCCCEEEEchHHhCC
Confidence 3589998865443 3433 22345666667665542 236899999999 7899999999999999999987754
|
| >d1ep3a_ c.1.4.1 (A:) Dihydroorotate dehydrogenase {Lactococcus lactis, isozyme B [TaxId: 1358]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: FMN-linked oxidoreductases family: FMN-linked oxidoreductases domain: Dihydroorotate dehydrogenase species: Lactococcus lactis, isozyme B [TaxId: 1358]
Probab=98.91 E-value=6e-09 Score=93.77 Aligned_cols=135 Identities=23% Similarity=0.318 Sum_probs=92.6
Q ss_pred cCCcEEEEeecCCCCHHHHHH---HHh-cCCcEEEEccCCCc-----------HH----HHHHHHh-CCCEEEEecC---
Q 020013 62 TERPFGVGVVLAFPHNENIKA---ILS-EKVAVLQVSWGEYS-----------EE----LVLEAHS-AGVKVVPQVG--- 118 (332)
Q Consensus 62 ~~~p~gvnl~~~~~~~~~~~~---~~~-~~~~~I~~~~g~~~-----------~~----~i~~~~~-~g~~v~~~v~--- 118 (332)
.+.|+.+++....+ ++..+. +.+ .++|.|.+++++|. ++ +.+.++. ..++++..+.
T Consensus 97 ~~~pii~si~~~~~-~~~~~~~~~~~~~~g~d~ielN~~cP~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~vkl~~~~ 175 (311)
T d1ep3a_ 97 PELPIIANVAGSEE-ADYVAVCAKIGDAANVKAIELNISCPNVKHGGQAFGTDPEVAAALVKACKAVSKVPLYVKLSPNV 175 (311)
T ss_dssp TTSCEEEEECCSSH-HHHHHHHHHHTTSTTEEEEEEECCSEEGGGTTEEGGGCHHHHHHHHHHHHHHCSSCEEEEECSCS
T ss_pred CCCcccccccchhh-hHHHHHHHHHhhcccccccccccCCCcccccccccccCHHHHHHHHHHHHhccCCCeeeeecccc
Confidence 57899999987543 333332 222 47899999887742 12 2233333 3566665543
Q ss_pred --CHHHHHHHHHcCCCEEEEecCC-----------------CCcccCCC---CchhhhHHHHHHHhCCCCCcEEeecCcC
Q 020013 119 --SFDEARKAVNAGVDAIIVQGRE-----------------AGGHVIGQ---DGLISLLPMVVDLIGDRDIPIIAAGGIV 176 (332)
Q Consensus 119 --s~~~a~~a~~~g~D~ivv~G~e-----------------aGGh~~~~---~~~~~ll~~i~~~~~~~~iPviaaGGI~ 176 (332)
..+.++.+.+.++|++++.+.. .||+. +. ...+.++.++++.+ ++|||+.|||.
T Consensus 176 ~~~~~~a~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~g~s-G~~i~~~~l~~i~~i~~~~---~ipIig~GGI~ 251 (311)
T d1ep3a_ 176 TDIVPIAKAVEAAGADGLTMINTLMGVRFDLKTRQPILANITGGLS-GPAIKPVALKLIHQVAQDV---DIPIIGMGGVA 251 (311)
T ss_dssp SCSHHHHHHHHHTTCSEEEECCCEEECCBCTTTCSBSSTTSCEEEE-SGGGHHHHHHHHHHHHTTC---SSCEEECSSCC
T ss_pred cchHHHHHHHHHhhhheeEEEeeccccccccccccccccccCCCCC-CCcccchhHHHHHHHhhhc---ceeEEEeCCcC
Confidence 4566777889999999986542 12222 11 12366677777665 79999999999
Q ss_pred CHHHHHHHHHcCcceeeeccccccC
Q 020013 177 DARGYVAALSLGAQGICLGTRFVAS 201 (332)
Q Consensus 177 ~~~~v~~al~~GA~gV~~GT~fl~t 201 (332)
|++|+.+++.+|||+|++||+++..
T Consensus 252 s~~Da~~~i~~GAd~V~ig~~~~~~ 276 (311)
T d1ep3a_ 252 NAQDVLEMYMAGASAVAVGTANFAD 276 (311)
T ss_dssp SHHHHHHHHHHTCSEEEECTHHHHC
T ss_pred CHHHHHHHHHcCCCEEEecHHHHcC
Confidence 9999999999999999999998754
|
| >d1rpxa_ c.1.2.2 (A:) D-ribulose-5-phosphate 3-epimerase {Potato (Solanum tuberosum) [TaxId: 4113]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Ribulose-phoshate binding barrel family: D-ribulose-5-phosphate 3-epimerase domain: D-ribulose-5-phosphate 3-epimerase species: Potato (Solanum tuberosum) [TaxId: 4113]
Probab=98.84 E-value=1.3e-08 Score=87.49 Aligned_cols=145 Identities=13% Similarity=0.264 Sum_probs=108.1
Q ss_pred HHHHHHhhcCCcEEEEeecCCCCHHHHHHHHhcCCcEEEEccCC----CcHHHHHHHHhCCCEEEEecC---CHHHHHHH
Q 020013 54 LIRKTRSLTERPFGVGVVLAFPHNENIKAILSEKVAVLQVSWGE----YSEELVLEAHSAGVKVVPQVG---SFDEARKA 126 (332)
Q Consensus 54 ~i~~~r~~~~~p~gvnl~~~~~~~~~~~~~~~~~~~~I~~~~g~----~~~~~i~~~~~~g~~v~~~v~---s~~~a~~a 126 (332)
.++.++..++.|+-+++++..| ..+++.+.+.+++.|.+|+.. .+.++++.+++.|+++...+. +++.....
T Consensus 59 ~v~~i~~~t~~~~dvHLMv~~P-~~~i~~~~~~g~~~i~~H~E~~~~~~~~~~i~~ik~~g~k~Gialnp~T~~~~l~~~ 137 (230)
T d1rpxa_ 59 VVDSLRPITDLPLDVHLMIVEP-DQRVPDFIKAGADIVSVHCEQSSTIHLHRTINQIKSLGAKAGVVLNPGTPLTAIEYV 137 (230)
T ss_dssp HHHHHGGGCCSCEEEEEESSSH-HHHHHHHHHTTCSEEEEECSTTTCSCHHHHHHHHHHTTSEEEEEECTTCCGGGGTTT
T ss_pred HHhhhhhccCceeeeeeeecch-hhhHHHHhhcccceeEEeccccccccHHHHHHHHHHcCCeEEEEeCCCCCHHHHHHH
Confidence 4677778889999999999877 678899999999999999642 246788999999999876543 34444333
Q ss_pred HHcCCCEEEEecCC--CCcccCCCCchhhhHHHHHHHhC--CCCCcEEeecCcCCHHHHHHHHHcCcceeeeccccccCc
Q 020013 127 VNAGVDAIIVQGRE--AGGHVIGQDGLISLLPMVVDLIG--DRDIPIIAAGGIVDARGYVAALSLGAQGICLGTRFVASE 202 (332)
Q Consensus 127 ~~~g~D~ivv~G~e--aGGh~~~~~~~~~ll~~i~~~~~--~~~iPviaaGGI~~~~~v~~al~~GA~gV~~GT~fl~t~ 202 (332)
+ .-+|.|.+-+.+ .+|.. .....+..+.++++... ..++.|.+.||| +.+++..+..+|||.+++||+++..+
T Consensus 138 l-~~vD~VllM~V~PGf~GQ~-f~~~~~~kI~~~~~~~~~~~~~~~I~vDGGI-n~~~i~~l~~~Gad~~V~GS~if~~~ 214 (230)
T d1rpxa_ 138 L-DAVDLVLIMSVNPGFGGQS-FIESQVKKISDLRKICAERGLNPWIEVDGGV-GPKNAYKVIEAGANALVAGSAVFGAP 214 (230)
T ss_dssp T-TTCSEEEEESSCTTCSSCC-CCTTHHHHHHHHHHHHHHHTCCCEEEEESSC-CTTTHHHHHHHTCCEEEESHHHHTSS
T ss_pred H-hhCCEEEEEEecCCcccch-hhhhhHHHHHHHHHHHHhcCCceEEEEECCc-CHHHHHHHHHcCCCEEEEChHHHCCC
Confidence 3 359999985543 34443 22345666766655432 136889999999 78999999999999999999987653
|
| >d1ujpa_ c.1.2.4 (A:) Trp synthase alpha-subunit {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Ribulose-phoshate binding barrel family: Tryptophan biosynthesis enzymes domain: Trp synthase alpha-subunit species: Thermus thermophilus [TaxId: 274]
Probab=98.84 E-value=1.4e-08 Score=89.05 Aligned_cols=152 Identities=17% Similarity=0.178 Sum_probs=99.3
Q ss_pred CHHHHHHHHHHHHhhcCCcEEE----EeecCCCCHHHHHHHHhcCCcEEEEccCCCc---HHHHHHHHhCCCEEEEecC-
Q 020013 47 APDYLRDLIRKTRSLTERPFGV----GVVLAFPHNENIKAILSEKVAVLQVSWGEYS---EELVLEAHSAGVKVVPQVG- 118 (332)
Q Consensus 47 ~~e~~~~~i~~~r~~~~~p~gv----nl~~~~~~~~~~~~~~~~~~~~I~~~~g~~~---~~~i~~~~~~g~~v~~~v~- 118 (332)
+.+.+-++++++|+..+.|+.+ |.+.....+.+++.+.+.|++.+.+. +.|+ .++.+.+++.|+..+.-++
T Consensus 75 ~~~~~~~~~~~~r~~~~~pivlm~Y~N~i~~~G~~~F~~~~~~aGvdGliip-DLP~ee~~~~~~~~~~~gl~~I~lvsP 153 (271)
T d1ujpa_ 75 SVQGALELVREVRALTEKPLFLMTYLNPVLAWGPERFFGLFKQAGATGVILP-DLPPDEDPGLVRLAQEIGLETVFLLAP 153 (271)
T ss_dssp CHHHHHHHHHHHHHHCCSCEEEECCHHHHHHHCHHHHHHHHHHHTCCEEECT-TCCGGGCHHHHHHHHHHTCEEECEECT
T ss_pred chhhHHHHHHHHhcccCCcEEEEeechhhhhCCchhHhHHHhhcCceeEecc-chhhhhHHHHHHHhhccccceeeccCC
Confidence 4455667778888777777765 32222233677889999999999887 3333 4677788888988775442
Q ss_pred --CHHHHHHHHHcCCCEEEEecCC-CCccc-CCCCchhhhHHHHHHHhCCCCCcEEeecCcCCHHHHHHHHHcCcceeee
Q 020013 119 --SFDEARKAVNAGVDAIIVQGRE-AGGHV-IGQDGLISLLPMVVDLIGDRDIPIIAAGGIVDARGYVAALSLGAQGICL 194 (332)
Q Consensus 119 --s~~~a~~a~~~g~D~ivv~G~e-aGGh~-~~~~~~~~ll~~i~~~~~~~~iPviaaGGI~~~~~v~~al~~GA~gV~~ 194 (332)
+.+..+...+..-.+|-+.... ..|.. .-......++..+++.. ++|+++.-||++++++..+ .+||||++
T Consensus 154 tT~~eRi~~i~~~s~GFIY~Vs~~GvTG~~~~~~~~~~~~i~~ik~~t---~~Pv~vGFGIs~~e~v~~~--~~ADGvIV 228 (271)
T d1ujpa_ 154 TSTDARIATVVRHATGFVYAVSVTGVTGMRERLPEEVKDLVRRIKART---ALPVAVGFGVSGKATAAQA--AVADGVVV 228 (271)
T ss_dssp TCCHHHHHHHHTTCCSCEEEECC------------CCHHHHHHHHTTC---CSCEEEESCCCSHHHHHHH--TTSSEEEE
T ss_pred CcchHHHHHHHHhCcchhhhhcccCccCccccchHHHHHHHHhhhccc---cCCeEEeCCCCCHHHHHHh--CCCCEEEE
Confidence 4455555555554555443331 11221 01123456677777654 8999999999999998764 59999999
Q ss_pred ccccccCccC
Q 020013 195 GTRFVASEES 204 (332)
Q Consensus 195 GT~fl~t~Es 204 (332)
||+|+..-|.
T Consensus 229 GSAiV~~i~e 238 (271)
T d1ujpa_ 229 GSALVRALEE 238 (271)
T ss_dssp CHHHHHHHHT
T ss_pred cHHHHHHHHh
Confidence 9999876543
|
| >d2b4ga1 c.1.4.1 (A:2-313) Dihydroorotate dehydrogenase {Trypanosoma brucei [TaxId: 5691]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: FMN-linked oxidoreductases family: FMN-linked oxidoreductases domain: Dihydroorotate dehydrogenase species: Trypanosoma brucei [TaxId: 5691]
Probab=98.82 E-value=1.7e-08 Score=90.92 Aligned_cols=191 Identities=15% Similarity=0.137 Sum_probs=111.3
Q ss_pred hhcCC--ccceecCCCCCCCCcHHHHHHHHhCCCceeecC---------CC-----------------C--CCHHHHHHH
Q 020013 5 GMLGF--EYGIVQAPLGPDISGPELVAAVANAGGLGLLRA---------PD-----------------W--EAPDYLRDL 54 (332)
Q Consensus 5 ~~l~~--~~Pii~apM~~g~s~~~la~avs~aGglG~i~~---------~~-----------------~--~~~e~~~~~ 54 (332)
+++|+ +.||+.+.=. .-.+.+....+..+|. |++.. ++ + ...+.+.+.
T Consensus 5 ~~~Gl~l~nPi~~aaG~-~~~~~~~~~~~~~~g~-g~vv~ktit~~p~~gnp~Pr~~~~~~~~~N~~G~~n~G~~~~~~~ 82 (312)
T d2b4ga1 5 NILGHEFSNPFMNAAGV-LCTTEEDLRRMTESES-GSLIGKSCTLAPRTGNPEPRYFGLPLGSINSMGLPNLGVDFYLSY 82 (312)
T ss_dssp EETTEEESSSEEECTTS-SCSSHHHHHHHHHSSC-SCEEEEEECSSCBCCSCSCCEEEETTEEEECCCCCBSCHHHHHHH
T ss_pred EECCEECCCCcEeCcCC-CCCCHHHHHHHHHcCC-CEEEeCcccccCCCCCCCCeEEecCchheeccccCcchHHHHHHH
Confidence 55664 5699987521 2357788888877763 33211 00 1 123445555
Q ss_pred HHHHHhhcCCcEEEEeecCCCC--HHHHH---HHHhcCCcEEEEccCCC-----------cH---HHHHHHHh-CCCEEE
Q 020013 55 IRKTRSLTERPFGVGVVLAFPH--NENIK---AILSEKVAVLQVSWGEY-----------SE---ELVLEAHS-AGVKVV 114 (332)
Q Consensus 55 i~~~r~~~~~p~gvnl~~~~~~--~~~~~---~~~~~~~~~I~~~~g~~-----------~~---~~i~~~~~-~g~~v~ 114 (332)
+++.+...++|+.+|+...... .+.++ ...+.++|++.++..+| +. ++++.+++ ..++++
T Consensus 83 l~~~~~~~~~pii~si~g~~~~~~~~~~~~~~~~~~~~ad~iElNiScPn~~~~~~~~~~~~~~~~i~~~v~~~~~~pi~ 162 (312)
T d2b4ga1 83 AAQTHDYSRKPLFLSMSGLSVEESVEMVKKLVPITKEKGTILELNLSCPNVPGKPQVGYDFDTTRTYLQKVSEAYGLPFG 162 (312)
T ss_dssp HHHTCCTTTCCEEEEECCSSHHHHHHHHHHHHHHHHHHCCEEEEECCCCCSTTCCCGGGCHHHHHHHHHHHHHHHCSCEE
T ss_pred HHHhhhccccceeccccccccccHHHHHHHHHHhhhhcccceeeccccCCcCcchhhhccHHHHHHHHHHhhccccccce
Confidence 5555555678999998764421 12222 23456789999875432 11 23344443 366777
Q ss_pred EecC---CHHHH----HHHHH-cCCCEEEEecC--------------------CCCcccCCCC---chhhhHHHHHHHhC
Q 020013 115 PQVG---SFDEA----RKAVN-AGVDAIIVQGR--------------------EAGGHVIGQD---GLISLLPMVVDLIG 163 (332)
Q Consensus 115 ~~v~---s~~~a----~~a~~-~g~D~ivv~G~--------------------eaGGh~~~~~---~~~~ll~~i~~~~~ 163 (332)
.+.+ +..+. ..+.+ .+++++...+. +.||.. |+. ..+..+.++++..+
T Consensus 163 vKl~p~~~~~~~~~~~~~~~~~~~~~~i~~~nt~~~~~~~~~~~~~~~~~~~~~~GGlS-G~~l~~~al~~v~~~~~~~~ 241 (312)
T d2b4ga1 163 VKMPPYFDIAHFDMAAAVLNDFPLVKFITCVNSIGNGLVIDPANETVVIKPKQGFGGLG-GKYVLPTALANVNAFFRRCP 241 (312)
T ss_dssp EEECCCCCHHHHHHHHHHHTTCTTEEEEEECCCEEEEECEETTTTEESCCGGGGEEEEE-EGGGHHHHHHHHHHHHHHCT
T ss_pred eccccccchhHHHHHHHHHHhhhhhhhhhhcccccccccccccCCCccccccccccCcc-cccccchhhHHHHHHHHHcC
Confidence 6654 22221 11212 34445443211 113333 221 13556666766654
Q ss_pred CCCCcEEeecCcCCHHHHHHHHHcCcceeeecccccc
Q 020013 164 DRDIPIIAAGGIVDARGYVAALSLGAQGICLGTRFVA 200 (332)
Q Consensus 164 ~~~iPviaaGGI~~~~~v~~al~~GA~gV~~GT~fl~ 200 (332)
+.||++.|||.+++|+.+++.+||+.||++|+++.
T Consensus 242 --~~~Iig~GGI~s~~Da~e~i~aGAs~Vqv~Tal~~ 276 (312)
T d2b4ga1 242 --DKLVFGCGGVYSGEEAFLHILAGASMVQVGTALHD 276 (312)
T ss_dssp --TSEEEEESSCCSHHHHHHHHHHTEEEEEESHHHHH
T ss_pred --CCceeecCCcCCHHHHHHHHHcCCChheeehhhHh
Confidence 57899999999999999999999999999999875
|
| >d1w0ma_ c.1.1.1 (A:) Triosephosphate isomerase {Thermoproteus tenax [TaxId: 2271]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Triosephosphate isomerase (TIM) family: Triosephosphate isomerase (TIM) domain: Triosephosphate isomerase species: Thermoproteus tenax [TaxId: 2271]
Probab=98.81 E-value=2.3e-08 Score=85.96 Aligned_cols=123 Identities=22% Similarity=0.265 Sum_probs=93.5
Q ss_pred HHHHHHhcCCcEEEEccCC------CcHHHHHHHHhCCCEEEEecCCHHHHHHHHHcCCCEEEEecCCCCcccCCCC-c-
Q 020013 79 NIKAILSEKVAVLQVSWGE------YSEELVLEAHSAGVKVVPQVGSFDEARKAVNAGVDAIIVQGREAGGHVIGQD-G- 150 (332)
Q Consensus 79 ~~~~~~~~~~~~I~~~~g~------~~~~~i~~~~~~g~~v~~~v~s~~~a~~a~~~g~D~ivv~G~eaGGh~~~~~-~- 150 (332)
..+.+.+.|++++.++... +..+.++++++.|+.++..+++.++++.+.+.+.|+|.+++..+.|+..... .
T Consensus 77 s~~~l~~~g~~~viigHsErR~~~~e~~~~~~~~~~~gl~~ivcvge~~~~~~~~~~~~~iIayep~waIGtg~~~~~~~ 156 (226)
T d1w0ma_ 77 SLENIKEAGGSGVILNHSEAPLKLNDLARLVAKAKSLGLDVVVCAPDPRTSLAAAALGPHAVAVEPPELIGTGRAVSRYK 156 (226)
T ss_dssp BHHHHHHHTCCEEEECCTTSCCBHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHTCCSEEEECCGGGTTTSCCHHHHC
T ss_pred eHhhhcccccceEEeechhhhhhccchHHHHHHHHHcCCEEEEecCchHHhhhhhccccceeeecchhhccCCCCCChhh
Confidence 3567778899999885332 1235567778899999999999999999999999999999888777641111 1
Q ss_pred ---hhhhHHHHHHHhCCCCCcEEeecCcCCHHHHHHHHHcCcceeeeccccccCcc
Q 020013 151 ---LISLLPMVVDLIGDRDIPIIAAGGIVDARGYVAALSLGAQGICLGTRFVASEE 203 (332)
Q Consensus 151 ---~~~ll~~i~~~~~~~~iPviaaGGI~~~~~v~~al~~GA~gV~~GT~fl~t~E 203 (332)
...++..+.+.. .++||+..|||.+..++..++..|+|||.+||+++.+++
T Consensus 157 ~~~i~~~i~~~~~~~--~~i~vlygGgV~~~n~~~~~~~~g~dGvLVGsA~l~a~d 210 (226)
T d1w0ma_ 157 PEAIVETVGLVSRHF--PEVSVITGAGIESGDDVAAALRLGTRGVLLASAAVKAKD 210 (226)
T ss_dssp HHHHHHHHHHHHHHC--TTSEEEEESSCCSHHHHHHHHHTTCSEEEECHHHHTCSS
T ss_pred hhHhhhhhhhhhccC--CCceEEEecCcCChHHHHHHhcCCCCEEEechheecCCC
Confidence 112233333322 279999999999889999999999999999999998766
|
| >d1f76a_ c.1.4.1 (A:) Dihydroorotate dehydrogenase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: FMN-linked oxidoreductases family: FMN-linked oxidoreductases domain: Dihydroorotate dehydrogenase species: Escherichia coli [TaxId: 562]
Probab=98.81 E-value=6.2e-08 Score=88.13 Aligned_cols=147 Identities=14% Similarity=0.253 Sum_probs=92.3
Q ss_pred HHHHHHHHhh-cCCcEEEEeecCCCC------HHHHH--HHHhcCCcEEEEccCCCcH----------H---HHHHH---
Q 020013 52 RDLIRKTRSL-TERPFGVGVVLAFPH------NENIK--AILSEKVAVLQVSWGEYSE----------E---LVLEA--- 106 (332)
Q Consensus 52 ~~~i~~~r~~-~~~p~gvnl~~~~~~------~~~~~--~~~~~~~~~I~~~~g~~~~----------~---~i~~~--- 106 (332)
...+...+.. .+.|+++|+..+... .++.. ..++.++|++.++..+|.. . ..+..
T Consensus 121 ~~~~~~~~~~~~~~~l~v~I~~~~~~~~~~a~~d~~~~~~~~~~~ad~iElNiScPN~~g~~~~~~~~~l~~~~~~~~~~ 200 (336)
T d1f76a_ 121 DNLVENVKKAHYDGVLGINIGKNKDTPVEQGKDDYLICMEKIYAYAGYIAINISSPNTPGLRTLQYGEALDDLLTAIKNK 200 (336)
T ss_dssp HHHHHHHHHCCCCSEEEEEECCCTTSCGGGTHHHHHHHHHHHGGGCSEEEEECCCSSSTTGGGGGSHHHHHHHHHHHHHH
T ss_pred HHHHHHhhcccccceEEEEEeccCCcchHHHHHHHHHHHHHhhcccceeeecccchhhhcccccccchhhccchhhhhhh
Confidence 3334444332 356899998765421 12222 2345689999998765420 0 11110
Q ss_pred -------HhCCCEEEEecCC-------HHHHHHHHHcCCCEEEEecCC--------------CCcccCCCC---chhhhH
Q 020013 107 -------HSAGVKVVPQVGS-------FDEARKAVNAGVDAIIVQGRE--------------AGGHVIGQD---GLISLL 155 (332)
Q Consensus 107 -------~~~g~~v~~~v~s-------~~~a~~a~~~g~D~ivv~G~e--------------aGGh~~~~~---~~~~ll 155 (332)
....++++.+++. .+.+..+.+.|+|+++..+.. .||.. |+. .....+
T Consensus 201 ~~~~~~~~~~~~Pv~vKlsp~~~~~~i~~~a~~~~~~g~~gv~~int~~~~~~~~~~~~~~~~GGlS-G~~i~~~al~~v 279 (336)
T d1f76a_ 201 QNDLQAMHHKYVPIAVKIAPDLSEEELIQVADSLVRHNIDGVIATNTTLDRSLVQGMKNCDQTGGLS-GRPLQLKSTEII 279 (336)
T ss_dssp HHHHHHHHTSCCCEEEECCSCCCHHHHHHHHHHHHHTTCSEEEECCCBCCCTTSTTSTTTTCSSEEE-EGGGHHHHHHHH
T ss_pred hhhhhhhccCcCCcccccchhhhhhhhhhhHHHHHhcCccchhhhhhhhcccccccccccccccccc-cchhHHHHHHHH
Confidence 1236788887752 123344567899999985531 23332 221 235556
Q ss_pred HHHHHHhCCCCCcEEeecCcCCHHHHHHHHHcCcceeeecccccc
Q 020013 156 PMVVDLIGDRDIPIIAAGGIVDARGYVAALSLGAQGICLGTRFVA 200 (332)
Q Consensus 156 ~~i~~~~~~~~iPviaaGGI~~~~~v~~al~~GA~gV~~GT~fl~ 200 (332)
.++++.++. ++|||+.|||.+++|+.+.+.+||+.||+||+|+.
T Consensus 280 ~~v~~~~~~-~ipIIG~GGI~s~~Da~e~i~aGAsaVQv~Tal~~ 323 (336)
T d1f76a_ 280 RRLSLELNG-RLPIIGVGGIDSVIAAREKIAAGASLVQIYSGFIF 323 (336)
T ss_dssp HHHHHHHTT-SSCEEEESSCCSHHHHHHHHHHTCSEEEESHHHHH
T ss_pred HHHHHHcCC-CCeEEEECCCCCHHHHHHHHHcCCcHHHHHHHHHh
Confidence 677776642 69999999999999999999999999999999863
|
| >d1i4na_ c.1.2.4 (A:) Indole-3-glycerophosphate synthase, IPGS {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Ribulose-phoshate binding barrel family: Tryptophan biosynthesis enzymes domain: Indole-3-glycerophosphate synthase, IPGS species: Thermotoga maritima [TaxId: 2336]
Probab=98.79 E-value=4.1e-08 Score=84.75 Aligned_cols=168 Identities=20% Similarity=0.246 Sum_probs=114.4
Q ss_pred cHHHHHHHHhCC--CceeecCCCCC--CHHHHHHHHHHHHhhcCCcEEEEeecCCCCHHHHHHHHhcCCcEEEEccCCCc
Q 020013 24 GPELVAAVANAG--GLGLLRAPDWE--APDYLRDLIRKTRSLTERPFGVGVVLAFPHNENIKAILSEKVAVLQVSWGEYS 99 (332)
Q Consensus 24 ~~~la~avs~aG--glG~i~~~~~~--~~e~~~~~i~~~r~~~~~p~gvnl~~~~~~~~~~~~~~~~~~~~I~~~~g~~~ 99 (332)
+|...+..-+.| ++.++.-..|. +.+. +..+++.++.|+-..=|+.+ +.++..+...|+|+|.+-....+
T Consensus 62 d~~~~a~~ye~GA~aiSVLTd~~~F~Gs~~~----l~~vr~~~~~PiLrKDFIid--~~QI~ea~~~GADaiLLI~~~L~ 135 (251)
T d1i4na_ 62 SLEDFIRMYDELADAISILTEKHYFKGDPAF----VRAARNLTCRPILAKDFYID--TVQVKLASSVGADAILIIARILT 135 (251)
T ss_dssp CHHHHHHHHHHHCSEEEEECCCSSSCCCTHH----HHHHHTTCCSCEEEECCCCS--THHHHHHHHTTCSEEEEEGGGSC
T ss_pred cHHHHHHHHhcCCcceEEecccCCCCCCHHH----HHHHhhcccCchhhhhhhhC--HHHHHHHHhhccceEEeeccccc
Confidence 555444454544 45555433221 3443 56677777788766545443 45777888899999988644433
Q ss_pred H----HHHHHHHhCCCEEEEecCCHHHHHHHHH-cCCCEEEEecCCCCcccCCCCchhhhHHHHHHHhCCCCCcEEeecC
Q 020013 100 E----ELVLEAHSAGVKVVPQVGSFDEARKAVN-AGVDAIIVQGREAGGHVIGQDGLISLLPMVVDLIGDRDIPIIAAGG 174 (332)
Q Consensus 100 ~----~~i~~~~~~g~~v~~~v~s~~~a~~a~~-~g~D~ivv~G~eaGGh~~~~~~~~~ll~~i~~~~~~~~iPviaaGG 174 (332)
. ++.+.++..|+.++..|++.+|+.++.+ .+++.|-+.++.--........+..+ ...++. +..+|+.+|
T Consensus 136 ~~~l~~l~~~a~~lgle~LvEvh~~~El~~al~~~~a~iiGINnRdL~t~~vd~~~~~~L----~~~ip~-~~~~IaESG 210 (251)
T d1i4na_ 136 AEQIKEIYEAAEELGMDSLVEVHSREDLEKVFSVIRPKIIGINTRDLDTFEIKKNVLWEL----LPLVPD-DTVVVAESG 210 (251)
T ss_dssp HHHHHHHHHHHHTTTCEEEEEECSHHHHHHHHTTCCCSEEEEECBCTTTCCBCTTHHHHH----GGGSCT-TSEEEEESC
T ss_pred HHHHHHHHHHHHHhCCeeecccCCHHHHHHHhcccccceeeeeecchhccchhhhHHHHH----HhhCCC-CCEEEEcCC
Confidence 3 4556677789999999999999999985 57999989777432221111122333 333432 688999999
Q ss_pred cCCHHHHHHHHHcCcceeeeccccccCcc
Q 020013 175 IVDARGYVAALSLGAQGICLGTRFVASEE 203 (332)
Q Consensus 175 I~~~~~v~~al~~GA~gV~~GT~fl~t~E 203 (332)
|.+++++.. +..|+|+|.+|+.+|.++.
T Consensus 211 I~~~~d~~~-l~~G~davLIG~sLm~~~~ 238 (251)
T d1i4na_ 211 IKDPRELKD-LRGKVNAVLVGTSIMKAEN 238 (251)
T ss_dssp CCCGGGHHH-HTTTCSEEEECHHHHHCSS
T ss_pred CCCHHHHHH-HHhCCCEEEEChHHhCCCC
Confidence 999999865 5789999999999997754
|
| >d1tqja_ c.1.2.2 (A:) D-ribulose-5-phosphate 3-epimerase {Synechocystis sp. PCC 6803 [TaxId: 1148]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Ribulose-phoshate binding barrel family: D-ribulose-5-phosphate 3-epimerase domain: D-ribulose-5-phosphate 3-epimerase species: Synechocystis sp. PCC 6803 [TaxId: 1148]
Probab=98.72 E-value=2.9e-08 Score=84.95 Aligned_cols=144 Identities=15% Similarity=0.232 Sum_probs=105.1
Q ss_pred HHHHHHhhcCCcEEEEeecCCCCHHHHHHHHhcCCcEEEEccCC--C--cHHHHHHHHhCCCEEEEecC---CHHHHHHH
Q 020013 54 LIRKTRSLTERPFGVGVVLAFPHNENIKAILSEKVAVLQVSWGE--Y--SEELVLEAHSAGVKVVPQVG---SFDEARKA 126 (332)
Q Consensus 54 ~i~~~r~~~~~p~gvnl~~~~~~~~~~~~~~~~~~~~I~~~~g~--~--~~~~i~~~~~~g~~v~~~v~---s~~~a~~a 126 (332)
.++.++..++.|+-+++++..| ..+++.+.+.+++.+.+|+.. . ..+.+..+++.|+++...+. +.+.....
T Consensus 51 ~~~~i~~~t~~~~dvHLMv~~P-~~~i~~~~~~g~~~i~~H~E~~~~~~~~~~~~~i~~~g~~~Gial~p~T~~~~l~~~ 129 (221)
T d1tqja_ 51 IVDAIRPLTKKTLDVHLMIVEP-EKYVEDFAKAGADIISVHVEHNASPHLHRTLCQIRELGKKAGAVLNPSTPLDFLEYV 129 (221)
T ss_dssp HHHHHGGGCCSEEEEEEESSSG-GGTHHHHHHHTCSEEEEECSTTTCTTHHHHHHHHHHTTCEEEEEECTTCCGGGGTTT
T ss_pred hHHhhhhccCcceeeeEEEeCH-HHHHHHHhhccceEEEEeeccccChhhHHHHHHHHHCCCCEEEEecCCCcHHHHHHH
Confidence 4677888889999999999888 578999999999999999742 1 24678888999998775543 34444333
Q ss_pred HHcCCCEEEEecCC--CCcccCCCCchhhhHHHHHHHhC--CCCCcEEeecCcCCHHHHHHHHHcCcceeeeccccccC
Q 020013 127 VNAGVDAIIVQGRE--AGGHVIGQDGLISLLPMVVDLIG--DRDIPIIAAGGIVDARGYVAALSLGAQGICLGTRFVAS 201 (332)
Q Consensus 127 ~~~g~D~ivv~G~e--aGGh~~~~~~~~~ll~~i~~~~~--~~~iPviaaGGI~~~~~v~~al~~GA~gV~~GT~fl~t 201 (332)
. .-+|.|.+-+.+ .+|+. .....+..+.++++..+ ..+++|.+.||| +.+++..+..+|||.+++||+++..
T Consensus 130 l-~~~d~vlvM~V~pG~~GQ~-f~~~~~~ki~~l~~~~~~~~~~~~I~VDGGI-n~~~i~~l~~~Gad~~V~GS~if~~ 205 (221)
T d1tqja_ 130 L-PVCDLILIMSVNPGFGGQS-FIPEVLPKIRALRQMCDERGLDPWIEVDGGL-KPNNTWQVLEAGANAIVAGSAVFNA 205 (221)
T ss_dssp G-GGCSEEEEESSCC----CC-CCGGGHHHHHHHHHHHHHHTCCCEEEEESSC-CTTTTHHHHHHTCCEEEESHHHHTS
T ss_pred H-hhhcEEEEEEecCCCCCcc-cchhhHHHHHHHHhhhhccccceEEEEECCc-CHHHHHHHHHcCCCEEEEChHHhCC
Confidence 3 358999985543 34443 22345566666655432 136889999999 7899999999999999999997754
|
| >d1tv5a1 c.1.4.1 (A:158-566) Dihydroorotate dehydrogenase {Plasmodium falciparum [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: FMN-linked oxidoreductases family: FMN-linked oxidoreductases domain: Dihydroorotate dehydrogenase species: Plasmodium falciparum [TaxId: 5833]
Probab=98.71 E-value=1.4e-07 Score=88.07 Aligned_cols=88 Identities=23% Similarity=0.327 Sum_probs=64.4
Q ss_pred EEEEecCC-------HHHHHHHHHcCCCEEEEecCCC------------CcccCCC---CchhhhHHHHHHHhCCCCCcE
Q 020013 112 KVVPQVGS-------FDEARKAVNAGVDAIIVQGREA------------GGHVIGQ---DGLISLLPMVVDLIGDRDIPI 169 (332)
Q Consensus 112 ~v~~~v~s-------~~~a~~a~~~g~D~ivv~G~ea------------GGh~~~~---~~~~~ll~~i~~~~~~~~iPv 169 (332)
+++.+++. .+.+..+.+.|+|+|++.+... ||.. |+ ......+.++++.+.. ++||
T Consensus 268 pi~vKlsPd~~~~~i~~i~~~~~~~g~dgii~~Nt~~~~~~~~~~~~~~GGlS-G~~l~~~al~~v~~v~~~~~~-~ipI 345 (409)
T d1tv5a1 268 LVFVKLAPDLNQEQKKEIADVLLETNIDGMIISNTTTQINDIKSFENKKGGVS-GAKLKDISTKFICEMYNYTNK-QIPI 345 (409)
T ss_dssp EEEEEECSCCCHHHHHHHHHHHHHTTCSEEEECCCBSCCCCCGGGTTCCSEEE-EHHHHHHHHHHHHHHHHHTTT-CSCE
T ss_pred ceEEEeCCCCCchhhHHHHHHHHhccccceecccccccccccccccccCCccc-chhHHHHHHHHHHHHHHHcCC-CceE
Confidence 56666542 2334557789999999977532 3322 11 1235567777777642 6999
Q ss_pred EeecCcCCHHHHHHHHHcCcceeeeccccccC
Q 020013 170 IAAGGIVDARGYVAALSLGAQGICLGTRFVAS 201 (332)
Q Consensus 170 iaaGGI~~~~~v~~al~~GA~gV~~GT~fl~t 201 (332)
|+.|||.|++|+.+.+.+||+.|||+|+|+..
T Consensus 346 IGvGGI~s~~Da~e~i~AGAs~VQv~T~li~~ 377 (409)
T d1tv5a1 346 IASGGIFSGLDALEKIEAGASVCQLYSCLVFN 377 (409)
T ss_dssp EEESSCCSHHHHHHHHHTTEEEEEESHHHHHH
T ss_pred EEECCCCCHHHHHHHHHcCCCHHhhhhHHHhc
Confidence 99999999999999999999999999998753
|
| >d1xm3a_ c.1.31.1 (A:) Thiazole biosynthesis protein ThiG {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: ThiG-like family: ThiG-like domain: Thiazole biosynthesis protein ThiG species: Bacillus subtilis [TaxId: 1423]
Probab=98.66 E-value=5.5e-08 Score=82.39 Aligned_cols=108 Identities=23% Similarity=0.304 Sum_probs=83.7
Q ss_pred HHHHhCCCEEEEecC-CHHHHHHHHHcCCCEEEEecCCCCcccCCCCchhhhHHHHHHHhCCCCCcEEeecCcCCHHHHH
Q 020013 104 LEAHSAGVKVVPQVG-SFDEARKAVNAGVDAIIVQGREAGGHVIGQDGLISLLPMVVDLIGDRDIPIIAAGGIVDARGYV 182 (332)
Q Consensus 104 ~~~~~~g~~v~~~v~-s~~~a~~a~~~g~D~ivv~G~eaGGh~~~~~~~~~ll~~i~~~~~~~~iPviaaGGI~~~~~v~ 182 (332)
+.+-+.|..|++-++ ++.-+++.++.||.+|.--|..-|... |- .....++.+++.. ++|||..+||+++.++.
T Consensus 119 e~Lv~eGF~VlpY~~~D~v~ak~Le~~Gc~avMPlgsPIGSg~-Gl-~n~~~l~~i~~~~---~vPvIvDAGIG~pSdAa 193 (251)
T d1xm3a_ 119 EQLLEEGFIVLPYTSDDVVLARKLEELGVHAIMPGASPIGSGQ-GI-LNPLNLSFIIEQA---KVPVIVDAGIGSPKDAA 193 (251)
T ss_dssp HHHHHTTCCEEEEECSCHHHHHHHHHHTCSCBEECSSSTTCCC-CC-SCHHHHHHHHHHC---SSCBEEESCCCSHHHHH
T ss_pred HHHHhCCcEEEEecCCCHHHHHHHHHcCChhHHHhhhhhhcCC-Cc-CChHHHHHHHhcC---CccEEEecCCCCHHHHH
Confidence 345568999999887 788999999999999998777666544 32 2345567777776 89999999999999999
Q ss_pred HHHHcCcceeeeccccccCccCC-CCHHHHHHHhc
Q 020013 183 AALSLGAQGICLGTRFVASEESY-AHPEYKRKLVE 216 (332)
Q Consensus 183 ~al~~GA~gV~~GT~fl~t~Es~-~~~~~k~~~~~ 216 (332)
.++++|||||.+.|++..++... ....+|.++..
T Consensus 194 ~AMElG~daVLvNTAIA~a~dPv~MA~A~~~Av~A 228 (251)
T d1xm3a_ 194 YAMELGADGVLLNTAVSGADDPVKMARAMKLAVEA 228 (251)
T ss_dssp HHHHTTCSEEEESHHHHTSSSHHHHHHHHHHHHHH
T ss_pred HHHHccCCEEEechhhhcCCCHHHHHHHHHHHHHH
Confidence 99999999999999987665432 12445555543
|
| >d1d3ga_ c.1.4.1 (A:) Dihydroorotate dehydrogenase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: FMN-linked oxidoreductases family: FMN-linked oxidoreductases domain: Dihydroorotate dehydrogenase species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.63 E-value=1.4e-07 Score=86.80 Aligned_cols=136 Identities=21% Similarity=0.260 Sum_probs=88.2
Q ss_pred CCcEEEEeecCCCC----H--HHHHHHHhcCCcEEEEccCCCcH----------HHH-------HHHHh----CCCEEEE
Q 020013 63 ERPFGVGVVLAFPH----N--ENIKAILSEKVAVLQVSWGEYSE----------ELV-------LEAHS----AGVKVVP 115 (332)
Q Consensus 63 ~~p~gvnl~~~~~~----~--~~~~~~~~~~~~~I~~~~g~~~~----------~~i-------~~~~~----~g~~v~~ 115 (332)
+.|+++|+...... + .......+.++|++.+++.+|.. ... +.... ..++++.
T Consensus 146 ~~pv~vsi~~~~~~~~~~~~~~~~~~~~~~~ad~lelNiScPn~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Pv~v 225 (367)
T d1d3ga_ 146 GLPLGVNLGKNKTSVDAAEDYAEGVRVLGPLADYLVVNVSSPNTAGLRSLQGKAELRRLLTKVLQERDGLRRVHRPAVLV 225 (367)
T ss_dssp TCCEEEEECCCTTCSCHHHHHHHHHHHHGGGCSEEEEESCCTTSTTC----CHHHHHHHHHHHHHHHHTSCGGGCCEEEE
T ss_pred CceEEEEeccccccHHHHHHHHHHHHHhhhcccccccccccccccccccccccchhhhHHHHHHHhhhhcccccCCcccc
Confidence 56999998765321 1 12233455689999998755310 111 11111 2468887
Q ss_pred ecC---CHH----HHHHHHHcCCCEEEEecCC--------------CCcccCCC---CchhhhHHHHHHHhCCCCCcEEe
Q 020013 116 QVG---SFD----EARKAVNAGVDAIIVQGRE--------------AGGHVIGQ---DGLISLLPMVVDLIGDRDIPIIA 171 (332)
Q Consensus 116 ~v~---s~~----~a~~a~~~g~D~ivv~G~e--------------aGGh~~~~---~~~~~ll~~i~~~~~~~~iPvia 171 (332)
+++ +.. .+..+.+.|+|+|++.+.. .||-. |. ......+..+++..+ .++|||+
T Consensus 226 KlsP~~~~~~i~~~a~~~~~~g~~gi~~~nt~~~~~~~~~~~~~~~~gg~s-G~~~~~i~l~~v~~v~~~~~-~~ipIig 303 (367)
T d1d3ga_ 226 KIAPDLTSQDKEDIASVVKELGIDGLIVTNTTVSRPAGLQGALRSETGGLS-GKPLRDLSTQTIREMYALTQ-GRVPIIG 303 (367)
T ss_dssp EECSCCCHHHHHHHHHHHHHHTCCEEEECCCBSCCCTTCCCTTTTSSSEEE-EGGGHHHHHHHHHHHHHHTT-TCSCEEE
T ss_pred ccCcccchhhhhhhHHHHHhhhhheeecccccccccccccccccccccccc-cccchhhhHHHHHHHHHHhC-CCccEEE
Confidence 765 332 2455678899999986542 12211 11 123455666666553 3799999
Q ss_pred ecCcCCHHHHHHHHHcCcceeeecccccc
Q 020013 172 AGGIVDARGYVAALSLGAQGICLGTRFVA 200 (332)
Q Consensus 172 aGGI~~~~~v~~al~~GA~gV~~GT~fl~ 200 (332)
.|||.+++|+.+.+.+||+.||++|+++.
T Consensus 304 ~GGI~s~~Da~e~i~aGAs~VQi~Ta~~~ 332 (367)
T d1d3ga_ 304 VGGVSSGQDALEKIRAGASLVQLYTALTF 332 (367)
T ss_dssp ESSCCSHHHHHHHHHHTCSEEEESHHHHH
T ss_pred ECCCCCHHHHHHHHHcCCCHHHhhHHHHh
Confidence 99999999999999999999999999875
|
| >d1tqxa_ c.1.2.2 (A:) D-ribulose-5-phosphate 3-epimerase {Plasmodium falciparum [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Ribulose-phoshate binding barrel family: D-ribulose-5-phosphate 3-epimerase domain: D-ribulose-5-phosphate 3-epimerase species: Plasmodium falciparum [TaxId: 5833]
Probab=98.59 E-value=2e-07 Score=79.61 Aligned_cols=143 Identities=14% Similarity=0.215 Sum_probs=103.5
Q ss_pred HHHHHHhh-cCCcEEEEeecCCCCHHHHHHHHhcCCcEEEEccCCC-cH---HHHHHHHhCCCEEEEecC---CHHHHHH
Q 020013 54 LIRKTRSL-TERPFGVGVVLAFPHNENIKAILSEKVAVLQVSWGEY-SE---ELVLEAHSAGVKVVPQVG---SFDEARK 125 (332)
Q Consensus 54 ~i~~~r~~-~~~p~gvnl~~~~~~~~~~~~~~~~~~~~I~~~~g~~-~~---~~i~~~~~~g~~v~~~v~---s~~~a~~ 125 (332)
.++++++. ++.|+-+++++..| ..+++...+.+++.++++.... .. ..++.+++.|+++..... +.+....
T Consensus 51 ~v~~i~~~~~~~~~dvHLMv~~P-~~~i~~~~~~~~~~i~~~~~~~~~~~~~~~i~~i~~~g~~~Gial~p~t~~~~~~~ 129 (221)
T d1tqxa_ 51 VINNLKKYTKSIFFDVHLMVEYP-EKYVPLLKTSNQLTFHFEALNEDTERCIQLAKEIRDNNLWCGISIKPKTDVQKLVP 129 (221)
T ss_dssp HHHHHGGGCSSCEEEEEEESSCG-GGGGGGCTTSSEEEEEGGGGTTCHHHHHHHHHHHHTTTCEEEEEECTTSCGGGGHH
T ss_pred HHhhhhhcCCchhhhhhHHhhhh-hhhhhhhhhcCceeEEeehhccccchhhHHHHHHHhcCCeEEEeeccccccccchh
Confidence 35677776 46799999999887 4567777778888888764222 22 445677889998876543 4555555
Q ss_pred HHH-cCCCEEEEecCC--CCcccCCCCchhhhHHHHHHHhCCCCCcEEeecCcCCHHHHHHHHHcCcceeeeccccccC
Q 020013 126 AVN-AGVDAIIVQGRE--AGGHVIGQDGLISLLPMVVDLIGDRDIPIIAAGGIVDARGYVAALSLGAQGICLGTRFVAS 201 (332)
Q Consensus 126 a~~-~g~D~ivv~G~e--aGGh~~~~~~~~~ll~~i~~~~~~~~iPviaaGGI~~~~~v~~al~~GA~gV~~GT~fl~t 201 (332)
... ..+|+|++-+.+ .+|+. .....+.-+.++++..+ ++.+.+.||| +.+++..+..+|||.+++||+++..
T Consensus 130 ~l~~~~~d~vlim~V~pG~~GQ~-f~~~~l~KI~~lr~~~~--~~~I~VDGGI-n~~~i~~l~~aGad~iV~GS~if~~ 204 (221)
T d1tqxa_ 130 ILDTNLINTVLVMTVEPGFGGQS-FMHDMMGKVSFLRKKYK--NLNIQVDGGL-NIETTEISASHGANIIVAGTSIFNA 204 (221)
T ss_dssp HHTTTCCSEEEEESSCTTCSSCC-CCGGGHHHHHHHHHHCT--TCEEEEESSC-CHHHHHHHHHHTCCEEEESHHHHTC
T ss_pred hcccccccEEEEEeecccccccc-cCcchhHHHHHHHHhcC--CcceEEEccc-CHHhHHHHHHcCCCEEEEChHHHCC
Confidence 554 569999886543 34443 22355777777776553 6889999999 8899999999999999999997765
|
| >d1wv2a_ c.1.31.1 (A:) Thiazole biosynthesis protein ThiG {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: ThiG-like family: ThiG-like domain: Thiazole biosynthesis protein ThiG species: Pseudomonas aeruginosa [TaxId: 287]
Probab=98.57 E-value=2.3e-07 Score=79.24 Aligned_cols=107 Identities=17% Similarity=0.237 Sum_probs=80.2
Q ss_pred HHHHhCCCEEEEecC-CHHHHHHHHHcCCCEEEEecCCCCcccCCCCchhhhHHHHHHHhCCCCCcEEeecCcCCHHHHH
Q 020013 104 LEAHSAGVKVVPQVG-SFDEARKAVNAGVDAIIVQGREAGGHVIGQDGLISLLPMVVDLIGDRDIPIIAAGGIVDARGYV 182 (332)
Q Consensus 104 ~~~~~~g~~v~~~v~-s~~~a~~a~~~g~D~ivv~G~eaGGh~~~~~~~~~ll~~i~~~~~~~~iPviaaGGI~~~~~v~ 182 (332)
+.+-+.|..|++.++ ++..+++.++.||..+.--|.--|... |- .....+..+++.. ++|||+++||+++.|+.
T Consensus 121 ~~Lv~egF~Vlpy~~~D~v~ak~le~~Gc~~vMplgsPIGsg~-Gi-~n~~~l~~i~~~~---~vpvivdAGIg~psdaa 195 (243)
T d1wv2a_ 121 EQLVKDGFDVMVYTSDDPIIARQLAEIGCIAVMPLAGLIGSGL-GI-CNPYNLRIILEEA---KVPVLVDAGVGTASDAA 195 (243)
T ss_dssp HHHHTTTCEEEEEECSCHHHHHHHHHSCCSEEEECSSSTTCCC-CC-SCHHHHHHHHHHC---SSCBEEESCCCSHHHHH
T ss_pred HHhhcCceEEEeccCCCHHHHhHHHHcCceeeeeccccccccc-cc-ccHHHHHhccccC---CcceEeecccCCHHHHH
Confidence 344567999999887 678889999999999998776544433 22 2233455666665 89999999999999999
Q ss_pred HHHHcCcceeeeccccccCccCC-CCHHHHHHHh
Q 020013 183 AALSLGAQGICLGTRFVASEESY-AHPEYKRKLV 215 (332)
Q Consensus 183 ~al~~GA~gV~~GT~fl~t~Es~-~~~~~k~~~~ 215 (332)
.++++|||||.+.|++..++.-. .-..+|+++.
T Consensus 196 ~AMElG~dgVLvnsaIa~A~dP~~mA~A~~~Av~ 229 (243)
T d1wv2a_ 196 IAMELGCEAVLMNTAIAHAKDPVMMAEAMKHAIV 229 (243)
T ss_dssp HHHHHTCSEEEESHHHHTSSSHHHHHHHHHHHHH
T ss_pred HHHHccCCEEEechHhhcCCCHHHHHHHHHHHHH
Confidence 99999999999999998776532 1234455544
|
| >d1hg3a_ c.1.1.1 (A:) Triosephosphate isomerase {Archaeon Pyrococcus woesei [TaxId: 2262]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Triosephosphate isomerase (TIM) family: Triosephosphate isomerase (TIM) domain: Triosephosphate isomerase species: Archaeon Pyrococcus woesei [TaxId: 2262]
Probab=98.55 E-value=3.9e-07 Score=77.94 Aligned_cols=123 Identities=15% Similarity=0.173 Sum_probs=91.5
Q ss_pred HHHHHHhcCCcEEEEccCC------CcHHHHHHHHhCCCEEEEecCCHHHHHHHHHcCCCEEEEecCCCCcccCCC-Cch
Q 020013 79 NIKAILSEKVAVLQVSWGE------YSEELVLEAHSAGVKVVPQVGSFDEARKAVNAGVDAIIVQGREAGGHVIGQ-DGL 151 (332)
Q Consensus 79 ~~~~~~~~~~~~I~~~~g~------~~~~~i~~~~~~g~~v~~~v~s~~~a~~a~~~g~D~ivv~G~eaGGh~~~~-~~~ 151 (332)
..+.+.+.|++++.++..+ +..+.++..++.|+.++..++...+++...+.+.+.|.++...+-|+.... ...
T Consensus 79 s~~~l~~~g~~~~iiGHSErr~~~~e~~~~i~~~~~~gl~~i~cv~~~~~~~~~~~~~~~iiAyEpvwaIGtg~~~~~~~ 158 (224)
T d1hg3a_ 79 LPEAVKEAGAVGTLLNHSENRMILADLEAAIRRAEEVGLMTMVCSNNPAVSAAVAALNPDYVAVEPPELIGTGIPVSKAK 158 (224)
T ss_dssp CHHHHHHTTCCEEEESCGGGCCBHHHHHHHHHHHHHHTCEEEEEESSHHHHHHHHTTCCSEEEECCTTTTTTSCCTTTSC
T ss_pred chhhccccCcceeeeccccccccccchhHHHHHHHHcCCceeechhhHHHHHhhhhcccceEEecchHhhccccCCCchh
Confidence 4567788999999884221 123566777788999999999999999999999999988887665543111 111
Q ss_pred h----hhHHHHHHHhCCCCCcEEeecCcCCHHHHHHHHHcCcceeeeccccccCcc
Q 020013 152 I----SLLPMVVDLIGDRDIPIIAAGGIVDARGYVAALSLGAQGICLGTRFVASEE 203 (332)
Q Consensus 152 ~----~ll~~i~~~~~~~~iPviaaGGI~~~~~v~~al~~GA~gV~~GT~fl~t~E 203 (332)
. ..+..+.+ .. .++||+..|||.++.++..++.+|+|||.+||+++.+++
T Consensus 159 ~~~i~~~i~~i~~-~~-~~v~vlygGsV~~~n~~~~~~~~g~dGvLVGsAsl~a~d 212 (224)
T d1hg3a_ 159 PEVITNTVELVKK-VN-PEVKVLCGAGISTGEDVKKAIELGTVGVLLASGVTKAKD 212 (224)
T ss_dssp THHHHHHHHHHHH-HC-TTSEEEEESSCCSHHHHHHHHHTTCSEEEESHHHHTCSS
T ss_pred hhhhhhhhhhhhh-hc-cccceEEeCCcCCHHHHHHHHhCCCCEEEEcceeecCcC
Confidence 2 22333322 22 279999999999999999999999999999999998755
|
| >d1znna1 c.1.2.6 (A:18-271) Pyridoxal biosynthesis lyase PdxS {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Ribulose-phoshate binding barrel family: PdxS-like domain: Pyridoxal biosynthesis lyase PdxS species: Bacillus stearothermophilus [TaxId: 1422]
Probab=98.41 E-value=2.4e-06 Score=71.83 Aligned_cols=185 Identities=18% Similarity=0.292 Sum_probs=118.4
Q ss_pred CCcHHHHHHHHhCCCceeecCC-------------CCCCHHHHHHHHHHHHhhcCCcEEEEeecCCCCHHHHHHHHhcCC
Q 020013 22 ISGPELVAAVANAGGLGLLRAP-------------DWEAPDYLRDLIRKTRSLTERPFGVGVVLAFPHNENIKAILSEKV 88 (332)
Q Consensus 22 ~s~~~la~avs~aGglG~i~~~-------------~~~~~e~~~~~i~~~r~~~~~p~gvnl~~~~~~~~~~~~~~~~~~ 88 (332)
++++|.+.-.+.+|...++... ++.+|+.+ .++.+....|.-...-+- ...-.+++-..+.
T Consensus 8 v~~~eqA~iAe~aGAvaVmaLervpadiR~~GGvaRm~dp~~i----~ei~~~vsipvmak~rig--h~~eaqiLe~~~v 81 (254)
T d1znna1 8 VVNAEQAKIAEAAGAVAVMALERVPADIRAAGGVARMADPTVI----EEVMNAVSIPVMAKVRIG--HYVEARVLEALGV 81 (254)
T ss_dssp ESSHHHHHHHHHHTCSEEEECC---------CCCCCCCCHHHH----HHHHHHCSSCEEEEEETT--CHHHHHHHHHHTC
T ss_pred ccCHHHHHHhhccCceeEeeeccCCHHHHhcCCcccCCCHHHH----HHHHHhcccccccccCCC--chHHHHhHHhhCC
Confidence 6789999888899988875442 23345443 444444455654443332 1234556667789
Q ss_pred cEEEEccCCCcHHHHHHH--HhCCCEEEEecCCHHHHHHHHHcCCCEEEEecCCCCcccC-------------------C
Q 020013 89 AVLQVSWGEYSEELVLEA--HSAGVKVVPQVGSFDEARKAVNAGVDAIIVQGREAGGHVI-------------------G 147 (332)
Q Consensus 89 ~~I~~~~g~~~~~~i~~~--~~~g~~v~~~v~s~~~a~~a~~~g~D~ivv~G~eaGGh~~-------------------~ 147 (332)
|++.-+-=..|......+ +...+++++.+.+.-++.+-...|+..|.-+|...-|... .
T Consensus 82 d~ideseVLTpad~~~hi~k~~fkvpfVcg~r~Lgealrri~EgAamIrtkGeagtgnvveav~h~R~i~~~i~~~~~m~ 161 (254)
T d1znna1 82 DYIDESEVLTPADEEFHIDKRQFTVPFVCGCRDLGEAARRIAEGASMLRTKGEPGTGNIVEAVRHMRKVNAQIRKVVNMS 161 (254)
T ss_dssp SEEEEETTSCCSCSSCCCCGGGCSSCEEEEESSHHHHHHHHHTTCSEEEECCCTTSCCCHHHHHHHHHHHHHHHHHHHSC
T ss_pred CcccHhHhcccccHHHhhcccceeeeeeCCCCccchhHHHHHHHHHHHHhCCccCCCcHHHHHHHHHHHHHHHHHHHcCC
Confidence 998643111111101111 1235789999999999888888899999999885444320 0
Q ss_pred C----------CchhhhHHHHHHHhCCCCCcEEeecCcCCHHHHHHHHHcCcceeeeccccccCccCCCCHHHHHHHhc
Q 020013 148 Q----------DGLISLLPMVVDLIGDRDIPIIAAGGIVDARGYVAALSLGAQGICLGTRFVASEESYAHPEYKRKLVE 216 (332)
Q Consensus 148 ~----------~~~~~ll~~i~~~~~~~~iPviaaGGI~~~~~v~~al~~GA~gV~~GT~fl~t~Es~~~~~~k~~~~~ 216 (332)
. .....++.++.+. ...++|+|++|||+++.|++.++.+|+|||.+||.+..++. +...-+++..
T Consensus 162 ~~el~~~ak~lg~p~~l~~~v~~~-g~l~v~~~~~~Gi~tpadaa~~MelG~dgV~v~s~I~~s~d---P~~~a~A~~~ 236 (254)
T d1znna1 162 EDELVAEAKQLGAPVEVLREIKRL-GRLPVVNFAAGGVTTPADAALMMHLGADGVFVGSGIFKSEN---PEKYARAIVE 236 (254)
T ss_dssp GGGHHHHHHHHTCCHHHHHHHHHH-TSCSSEEEEESSCCSHHHHHHHHHTTCSEEEECGGGGGSSC---HHHHHHHHHH
T ss_pred HHHHHHHHHhhCCchHHHHHHHHh-CCCCceEEecCCCCChhhHHHHHHcCCCEEEEcchhhcCCC---HHHHHHHHHH
Confidence 0 0123444555443 22379999999999999999999999999999999998764 3444444444
|
| >d1ea0a2 c.1.4.1 (A:423-1193) Alpha subunit of glutamate synthase, central and FMN domains {Azospirillum brasilense [TaxId: 192]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: FMN-linked oxidoreductases family: FMN-linked oxidoreductases domain: Alpha subunit of glutamate synthase, central and FMN domains species: Azospirillum brasilense [TaxId: 192]
Probab=98.33 E-value=3.9e-07 Score=89.64 Aligned_cols=119 Identities=19% Similarity=0.228 Sum_probs=80.7
Q ss_pred cCCcEEEEc--cCC-CcH---HHHHHHHh--CCCEEEEecC---CHH-HHHHHHHcCCCEEEEecCCCCcccCCC-----
Q 020013 86 EKVAVLQVS--WGE-YSE---ELVLEAHS--AGVKVVPQVG---SFD-EARKAVNAGVDAIIVQGREAGGHVIGQ----- 148 (332)
Q Consensus 86 ~~~~~I~~~--~g~-~~~---~~i~~~~~--~g~~v~~~v~---s~~-~a~~a~~~g~D~ivv~G~eaGGh~~~~----- 148 (332)
.|.+.++-+ ... .++ +++..+|+ .|.+|..++. .+. .+..+.++|+|+|++.|.++|... .+
T Consensus 539 ~G~~~iSP~~h~di~siedL~~~I~~Lr~~~~~~pv~vKl~~~~~~~~i~~~v~ka~~D~I~IdG~eGGTGA-ap~~~~d 617 (771)
T d1ea0a2 539 PGVMLISPPPHHDIYSIEDLAQLIYDLKQINPDAKVTVKLVSRSGIGTIAAGVAKANADIILISGNSGGTGA-SPQTSIK 617 (771)
T ss_dssp TTCCEECCSSCTTCSSHHHHHHHHHHHHHHCTTCEEEEEEECCTTHHHHHHHHHHTTCSEEEEECTTCCCSS-EETTHHH
T ss_pred CCCCccCCCCCCCCCCHHHHHHHHHHHHhcCCCCCEEEEECCcCcHHHHHHHHHhcCCCEEEEecCCCcccc-ccHHHhh
Confidence 467777642 111 133 34555565 2677765532 233 344456889999999999866432 11
Q ss_pred ---CchhhhHHHHHHHhCC----CCCcEEeecCcCCHHHHHHHHHcCcceeeeccccccCccCC
Q 020013 149 ---DGLISLLPMVVDLIGD----RDIPIIAAGGIVDARGYVAALSLGAQGICLGTRFVASEESY 205 (332)
Q Consensus 149 ---~~~~~ll~~i~~~~~~----~~iPviaaGGI~~~~~v~~al~~GA~gV~~GT~fl~t~Es~ 205 (332)
.+...-|+++.+.+.. .++.++++||+.++.|++.++++|||+|.+||.+|.+--|-
T Consensus 618 ~~GlP~~~~l~~~~~~L~~~glr~~V~l~a~Ggl~t~~Dv~ka~aLGAD~v~~gt~~m~alGCi 681 (771)
T d1ea0a2 618 FAGLPWEMGLSEVHQVLTLNRLRHRVRLRTDGGLKTGRDIVIAAMLGAEEFGIGTASLIAMGCI 681 (771)
T ss_dssp HSCCCHHHHHHHHHHHHHTTTCTTTSEEEEESSCCSHHHHHHHHHTTCSEEECCHHHHHHHTCC
T ss_pred cCCcCHHHHHHHHHHHHHHcCCCCceEEEEeCCCCCHHHHHHHHHhCCCchHHhHHHHHHhhCH
Confidence 2334445555555422 36999999999999999999999999999999999887775
|
| >d1q6oa_ c.1.2.3 (A:) 3-keto-L-gulonate 6-phosphate decarboxylase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Ribulose-phoshate binding barrel family: Decarboxylase domain: 3-keto-L-gulonate 6-phosphate decarboxylase species: Escherichia coli [TaxId: 562]
Probab=98.31 E-value=3.4e-06 Score=70.52 Aligned_cols=144 Identities=12% Similarity=0.113 Sum_probs=94.3
Q ss_pred HHHHHHhh-cCCcEEEEeecCCCCHHHHHHHHhcCCcEEEEccCCCc---HHHHHHHHhCCCEEEEe---cCCHHHHHHH
Q 020013 54 LIRKTRSL-TERPFGVGVVLAFPHNENIKAILSEKVAVLQVSWGEYS---EELVLEAHSAGVKVVPQ---VGSFDEARKA 126 (332)
Q Consensus 54 ~i~~~r~~-~~~p~gvnl~~~~~~~~~~~~~~~~~~~~I~~~~g~~~---~~~i~~~~~~g~~v~~~---v~s~~~a~~a 126 (332)
.++++++. ++.++-..+...+......+.+.+.++|.+.+|.-..+ ...++..++.|.++... .++.+.....
T Consensus 44 ~i~~l~~~~~~~~i~~d~k~~d~~~~~~~~~~~~gad~vtvh~~~g~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~ 123 (213)
T d1q6oa_ 44 AVRDLKALYPHKIVLADAKIADAGKILSRMCFEANADWVTVICCADINTAKGALDVAKEFNGDVQIELTGYWTWEQAQQW 123 (213)
T ss_dssp HHHHHHHHCTTSEEEEEEEECSCHHHHHHHHHHTTCSEEEEETTSCHHHHHHHHHHHHHTTCEEEEEECSCCCHHHHHHH
T ss_pred HHHHHHHhcccccceeEEeeccchHHHHHHHHHcCCCEEEEeccCCchHHHHHHHHHHHcCCceecccCCCCCHHHHHHH
Confidence 35555554 34555555555544345567778899999999842222 23445566778876543 3467788888
Q ss_pred HHcCCCEEEEec-CCCC--cccCCCCchhhhHHHHHHHhCCCCCcEEeecCcCCHHHHHHHHHcCcceeeeccccccCcc
Q 020013 127 VNAGVDAIIVQG-REAG--GHVIGQDGLISLLPMVVDLIGDRDIPIIAAGGIVDARGYVAALSLGAQGICLGTRFVASEE 203 (332)
Q Consensus 127 ~~~g~D~ivv~G-~eaG--Gh~~~~~~~~~ll~~i~~~~~~~~iPviaaGGI~~~~~v~~al~~GA~gV~~GT~fl~t~E 203 (332)
.+.++|.+++.- .+.| |.. .....+..+.+... .+.++...||+ +++++.+++.+|||.+++|+++..++.
T Consensus 124 ~~~~~~~~~~~~~~~~g~~~~~-~~~~~l~~i~~~~~----~~~~i~~~gGi-~~~~~~~~~~~Gad~iVVGr~I~~a~d 197 (213)
T d1q6oa_ 124 RDAGIGQVVYHRSRDAQAAGVA-WGEADITAIKRLSD----MGFKVTVTGGL-ALEDLPLFKGIPIHVFIAGRSIRDAAS 197 (213)
T ss_dssp HHTTCCEEEEECCHHHHHTTCC-CCHHHHHHHHHHHH----TTCEEEEESSC-CGGGGGGGTTSCCSEEEESHHHHTSSC
T ss_pred HHhHHHHHHHHHhcccCcCCee-CCHHHHHHHHHhhc----cCceEecCCCc-CcCCHHHHHHcCCCEEEEChhhcCCCC
Confidence 899999888632 2211 221 11122333433332 26899999999 799999999999999999999987644
|
| >d1ofda2 c.1.4.1 (A:431-1239) Alpha subunit of glutamate synthase, central and FMN domains {Synechocystis sp. [TaxId: 1143]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: FMN-linked oxidoreductases family: FMN-linked oxidoreductases domain: Alpha subunit of glutamate synthase, central and FMN domains species: Synechocystis sp. [TaxId: 1143]
Probab=98.25 E-value=5.3e-07 Score=88.95 Aligned_cols=119 Identities=18% Similarity=0.224 Sum_probs=79.0
Q ss_pred cCCcEEEEc--cCCC-cH---HHHHHHHh--CCCEEEEecC----CHHHHHHHHHcCCCEEEEecCCCCcccCCC-----
Q 020013 86 EKVAVLQVS--WGEY-SE---ELVLEAHS--AGVKVVPQVG----SFDEARKAVNAGVDAIIVQGREAGGHVIGQ----- 148 (332)
Q Consensus 86 ~~~~~I~~~--~g~~-~~---~~i~~~~~--~g~~v~~~v~----s~~~a~~a~~~g~D~ivv~G~eaGGh~~~~----- 148 (332)
.|.+.|+-+ .+.. ++ .++..+|+ .+.+|..++. -...+....++++|+|++.|.++|... .+
T Consensus 566 ~G~~liSP~~h~diysiedL~q~I~~Lr~~~~~~pv~vKl~~~~g~~~ia~~vaka~aD~I~IdG~eGGTGA-ap~~~~~ 644 (809)
T d1ofda2 566 PGVTLISPPPHHDIYSIEDLAQLIYDLHQINPEAQVSVKLVAEIGIGTIAAGVAKANADIIQISGHDGGTGA-SPLSSIK 644 (809)
T ss_dssp TTCCEECCSSCTTCSSHHHHHHHHHHHHHHCTTSEEEEEEECSTTHHHHHHHHHHTTCSEEEEECTTCCCSS-EEHHHHH
T ss_pred CCCCCCCCCCCCCCCCHHHHHHHHHHHHHhCCCCceEEEEeeecChHHHHHHHhhcCCCEEEEeCCCCcccc-ccHHHHh
Confidence 467777542 1111 23 34555665 3666665432 233444456889999999999865421 11
Q ss_pred ---CchhhhHHHHHHHhCC----CCCcEEeecCcCCHHHHHHHHHcCcceeeeccccccCccCC
Q 020013 149 ---DGLISLLPMVVDLIGD----RDIPIIAAGGIVDARGYVAALSLGAQGICLGTRFVASEESY 205 (332)
Q Consensus 149 ---~~~~~ll~~i~~~~~~----~~iPviaaGGI~~~~~v~~al~~GA~gV~~GT~fl~t~Es~ 205 (332)
.+...-|+++.+.+.. .++.++++||+.++.|+..++++|||+|.+||.+|.+--|-
T Consensus 645 ~~GlP~~~gl~~a~~~L~~~glR~~V~Lia~Ggl~t~~Dv~ka~aLGAD~v~~gt~~l~alGCi 708 (809)
T d1ofda2 645 HAGSPWELGVTEVHRVLMENQLRDRVLLRADGGLKTGWDVVMAALMGAEEYGFGSIAMIAEGCI 708 (809)
T ss_dssp HBCCCHHHHHHHHHHHHHHTTCGGGCEEEEESSCCSHHHHHHHHHTTCSEEECSHHHHHHTTCC
T ss_pred cCCccHHHHHHHHHHHHHHcCCCCceEEEEeCCCCCHHHHHHHHHhCCCchhHhHHHHHHHHCH
Confidence 1333345555544321 36999999999999999999999999999999999887664
|
| >d1thfd_ c.1.2.1 (D:) Cyclase subunit (or domain) of imidazoleglycerolphosphate synthase HisF {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Ribulose-phoshate binding barrel family: Histidine biosynthesis enzymes domain: Cyclase subunit (or domain) of imidazoleglycerolphosphate synthase HisF species: Thermotoga maritima [TaxId: 2336]
Probab=98.11 E-value=5.8e-05 Score=65.18 Aligned_cols=182 Identities=21% Similarity=0.240 Sum_probs=115.7
Q ss_pred HHHHHHHhCCCceee--cCCC-CCCHHHHHHHHHHHHhhcCCcEEEEeecCCCCHHHHHHHHhcCCcEEEEccC--CCcH
Q 020013 26 ELVAAVANAGGLGLL--RAPD-WEAPDYLRDLIRKTRSLTERPFGVGVVLAFPHNENIKAILSEKVAVLQVSWG--EYSE 100 (332)
Q Consensus 26 ~la~avs~aGglG~i--~~~~-~~~~e~~~~~i~~~r~~~~~p~gvnl~~~~~~~~~~~~~~~~~~~~I~~~~g--~~~~ 100 (332)
+++...++.|.=-+. -.-. ........+.+.++.+.+..|+-++=-+. ..+.++.+.+.|++-|.++.- ..|
T Consensus 34 ~~a~~~~~~g~dei~ivDld~~~~~~~~~~~~i~~i~~~~~~pi~vgGGIr--~~e~i~~~l~~Ga~kviigs~~~~n~- 110 (253)
T d1thfd_ 34 ELGKFYSEIGIDELVFLDITASVEKRKTMLELVEKVAEQIDIPFTVGGGIH--DFETASELILRGADKVSINTAAVENP- 110 (253)
T ss_dssp HHHHHHHHTTCCEEEEEESSCSSSHHHHHHHHHHHHHTTCCSCEEEESSCC--SHHHHHHHHHTTCSEEEESHHHHHCT-
T ss_pred HHHHHHHHcCCCEEEEEeecccccCcccHHHHHHHHHhccCccceeecccc--cchhhhhHHhcCCCEEEEChHHhhCh-
Confidence 577777777742222 1211 12233445677777776777876653332 367788899999999988521 113
Q ss_pred HHHHHH-HhCCCE--EE-Ee---------c----------CC-HHHHHHHHHcCCCEEEEecCCCCcccCCCCchhhhHH
Q 020013 101 ELVLEA-HSAGVK--VV-PQ---------V----------GS-FDEARKAVNAGVDAIIVQGREAGGHVIGQDGLISLLP 156 (332)
Q Consensus 101 ~~i~~~-~~~g~~--v~-~~---------v----------~s-~~~a~~a~~~g~D~ivv~G~eaGGh~~~~~~~~~ll~ 156 (332)
++++.+ +..|-. ++ .. + .+ .+......+.|+.-+++..-+.-|...| ..+.++.
T Consensus 111 ~~l~~~~~~~G~~~iv~~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~eii~tdI~~dGt~~G--~d~~ll~ 188 (253)
T d1thfd_ 111 SLITQIAQTFGSQAVVVAIDAKRVDGEFMVFTYSGKKNTGILLRDWVVEVEKRGAGEILLTSIDRDGTKSG--YDTEMIR 188 (253)
T ss_dssp HHHHHHHHHHCGGGEEEEEEEEEETTEEEEEETTTTEEEEEEHHHHHHHHHHTTCSEEEEEETTTTTSCSC--CCHHHHH
T ss_pred HHHHHHHHHcCCeeEEEeeeecccCCceeeeeeecccccchhHHHHHHHHHhccCCEEEEEEecccCccCC--ccccccc
Confidence 333333 322211 11 00 0 02 3456677889999999977655454322 3477788
Q ss_pred HHHHHhCCCCCcEEeecCcCCHHHHHHHHHcCcceeeeccccccCccCCCCHHHHHHHhcC
Q 020013 157 MVVDLIGDRDIPIIAAGGIVDARGYVAALSLGAQGICLGTRFVASEESYAHPEYKRKLVEM 217 (332)
Q Consensus 157 ~i~~~~~~~~iPviaaGGI~~~~~v~~al~~GA~gV~~GT~fl~t~Es~~~~~~k~~~~~~ 217 (332)
.+.+.. ++|++++||+++.+++.+++..|++||.+|++|...+- ..+..|+.+.+.
T Consensus 189 ~i~~~~---~~pvi~~GGv~s~~di~~l~~~g~~gvivgsal~~~~~--~~~~~k~~l~~~ 244 (253)
T d1thfd_ 189 FVRPLT---TLPIIASGGAGKMEHFLEAFLAGADAALAASVFHFREI--DVRELKEYLKKH 244 (253)
T ss_dssp HHGGGC---CSCEEEESCCCSHHHHHHHHHTTCSEEEESHHHHTTCS--CHHHHHHHHHHT
T ss_pred cccccc---cceEEEecCCCCHHHHHHHHHCCCCEEEEchHHHcCCC--CHHHHHHHHHHC
Confidence 876655 79999999999999999999999999999999864332 235566666653
|
| >d1ka9f_ c.1.2.1 (F:) Cyclase subunit (or domain) of imidazoleglycerolphosphate synthase HisF {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Ribulose-phoshate binding barrel family: Histidine biosynthesis enzymes domain: Cyclase subunit (or domain) of imidazoleglycerolphosphate synthase HisF species: Thermus thermophilus [TaxId: 274]
Probab=98.06 E-value=2.6e-05 Score=67.42 Aligned_cols=185 Identities=25% Similarity=0.334 Sum_probs=116.5
Q ss_pred CCcH-HHHHHHHhCCC--ceeecCC-CCCCHHHHHHHHHHHHhhcCCcEEEEeecCCCCHHHHHHHHhcCCcEEEEccC-
Q 020013 22 ISGP-ELVAAVANAGG--LGLLRAP-DWEAPDYLRDLIRKTRSLTERPFGVGVVLAFPHNENIKAILSEKVAVLQVSWG- 96 (332)
Q Consensus 22 ~s~~-~la~avs~aGg--lG~i~~~-~~~~~e~~~~~i~~~r~~~~~p~gvnl~~~~~~~~~~~~~~~~~~~~I~~~~g- 96 (332)
..+| ++|...++.|. +=++-.. .........+.++++.+.+..|+-++=-+. ..+.++.+++.|++-|.++-.
T Consensus 29 ~gdP~~~a~~~~~~g~dei~iiDl~~~~~~~~~~~~~i~~i~~~~~~pi~vgGGIr--s~e~~~~ll~~Ga~kVii~s~~ 106 (251)
T d1ka9f_ 29 AGDPVEAARAYDEAGADELVFLDISATHEERAILLDVVARVAERVFIPLTVGGGVR--SLEDARKLLLSGADKVSVNSAA 106 (251)
T ss_dssp TTCHHHHHHHHHHHTCSCEEEEECCSSTTCHHHHHHHHHHHHTTCCSCEEEESSCC--SHHHHHHHHHHTCSEEEECHHH
T ss_pred CCCHHHHHHHHHHcCCCEEEEEecccccccchhHHHHHHHHHhccCcchheecccc--CHHHHHHHHHcCCCEEEECchh
Confidence 3455 46666666664 2222211 112233445667777766667776643332 257788889999998887511
Q ss_pred -CCcHHHHHHH-HhCCCE--EE------------E---------ecCCHHHHHHHHHcCCCEEEEecCCCCcccCCCCch
Q 020013 97 -EYSEELVLEA-HSAGVK--VV------------P---------QVGSFDEARKAVNAGVDAIIVQGREAGGHVIGQDGL 151 (332)
Q Consensus 97 -~~~~~~i~~~-~~~g~~--v~------------~---------~v~s~~~a~~a~~~g~D~ivv~G~eaGGh~~~~~~~ 151 (332)
..+ ++++.+ +..|.. +. . ...-.+......+.|+.-+++..-+--|...| ..
T Consensus 107 ~~n~-~~i~~~~~~~G~q~iv~~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~eii~tdi~~dG~~~G--~d 183 (251)
T d1ka9f_ 107 VRRP-ELIRELADHFGAQAVVLAIDARWRGDFPEVHVAGGRVPTGLHAVEWAVKGVELGAGEILLTSMDRDGTKEG--YD 183 (251)
T ss_dssp HHCT-HHHHHHHHHHCGGGEEEEEEEEEETTEEEEEETTTTEEEEEEHHHHHHHHHHHTCCEEEEEETTTTTTCSC--CC
T ss_pred hhCH-HHHHHHHHhhcccccccccchhhcccceEEEeccceecCCccHHHHHHHHHhcCCCEEEEEeecccCccCC--cc
Confidence 112 344433 322211 11 0 01123556778899999999987655454323 34
Q ss_pred hhhHHHHHHHhCCCCCcEEeecCcCCHHHHHHHHHcCcceeeeccccccCccCCCCHHHHHHHhc
Q 020013 152 ISLLPMVVDLIGDRDIPIIAAGGIVDARGYVAALSLGAQGICLGTRFVASEESYAHPEYKRKLVE 216 (332)
Q Consensus 152 ~~ll~~i~~~~~~~~iPviaaGGI~~~~~v~~al~~GA~gV~~GT~fl~t~Es~~~~~~k~~~~~ 216 (332)
+.++..+.+.. ++|++++||+++.+++.+++..|++||.+|++|...+= .-+..|+.+.+
T Consensus 184 ~~l~~~i~~~~---~~pii~~GGv~~~~dl~~l~~~g~~gviig~al~~g~~--~~~~~k~~l~~ 243 (251)
T d1ka9f_ 184 LRLTRMVAEAV---GVPVIASGGAGRMEHFLEAFQAGAEAALAASVFHFGEI--PIPKLKRYLAE 243 (251)
T ss_dssp HHHHHHHHHHC---SSCEEEESCCCSHHHHHHHHHTTCSEEEESHHHHTTSS--CHHHHHHHHHH
T ss_pred hhHHHHHHhhc---ceeEEEecCCCCHHHHHHHHHCCCCEEEEhHHHHcCCC--CHHHHHHHHHH
Confidence 78888888776 79999999999999999999999999999999874432 12456666654
|
| >d1h5ya_ c.1.2.1 (A:) Cyclase subunit (or domain) of imidazoleglycerolphosphate synthase HisF {Archaeon Pyrobaculum aerophilum [TaxId: 13773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Ribulose-phoshate binding barrel family: Histidine biosynthesis enzymes domain: Cyclase subunit (or domain) of imidazoleglycerolphosphate synthase HisF species: Archaeon Pyrobaculum aerophilum [TaxId: 13773]
Probab=98.04 E-value=4.2e-05 Score=66.07 Aligned_cols=181 Identities=20% Similarity=0.270 Sum_probs=113.5
Q ss_pred HHHHHHHhCCC--ceeecCCC-CCCHHHHHHHHHHHHhhcCCcEEEEeecCCCCHHHHHHHHhcCCcEEEEccC--CCcH
Q 020013 26 ELVAAVANAGG--LGLLRAPD-WEAPDYLRDLIRKTRSLTERPFGVGVVLAFPHNENIKAILSEKVAVLQVSWG--EYSE 100 (332)
Q Consensus 26 ~la~avs~aGg--lG~i~~~~-~~~~e~~~~~i~~~r~~~~~p~gvnl~~~~~~~~~~~~~~~~~~~~I~~~~g--~~~~ 100 (332)
+++......|. +=++-... ..........++++...+..|+-++=-+. ..+.++.+...|++-|.++-. ..+
T Consensus 36 ~~a~~~~~~gadei~ivDl~~~~~~~~~~~~~i~~i~~~~~~pi~~gGGIr--~~e~~~~ll~~G~~kVii~s~~~~~~- 112 (252)
T d1h5ya_ 36 EMAVRYEEEGADEIAILDITAAPEGRATFIDSVKRVAEAVSIPVLVGGGVR--SLEDATTLFRAGADKVSVNTAAVRNP- 112 (252)
T ss_dssp HHHHHHHHTTCSCEEEEECCCCTTTHHHHHHHHHHHHHHCSSCEEEESSCC--SHHHHHHHHHHTCSEEEESHHHHHCT-
T ss_pred HHHHHHHHCCCCEEEEEeccccccccccHHHHHHHHHhhcCCcceeecccc--hhhhhhhHhhcCCcEEEecccccCCc-
Confidence 56666666663 32332211 11223334567777666777876654332 257788889999999887511 112
Q ss_pred HHHHHH-HhCCCE-EE--Ee--------------------cCCHHHHHHHHHcCCCEEEEecCCCCcccCCCCchhhhHH
Q 020013 101 ELVLEA-HSAGVK-VV--PQ--------------------VGSFDEARKAVNAGVDAIIVQGREAGGHVIGQDGLISLLP 156 (332)
Q Consensus 101 ~~i~~~-~~~g~~-v~--~~--------------------v~s~~~a~~a~~~g~D~ivv~G~eaGGh~~~~~~~~~ll~ 156 (332)
++++.+ +..|-. ++ .. ....+.++.+.+.|+.-+++..-.--|...| ..+.++.
T Consensus 113 ~~~~~~~~~~G~q~iv~slD~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~g~~eii~tdI~~dG~~~G--~d~~~~~ 190 (252)
T d1h5ya_ 113 QLVALLAREFGSQSTVVAIDAKWNGEYYEVYVKGGREATGLDAVKWAKEVEELGAGEILLTSIDRDGTGLG--YDVELIR 190 (252)
T ss_dssp HHHHHHHHHHCGGGEEEEEEEEECSSSEEEEETTTTEEEEEEHHHHHHHHHHHTCSEEEEEETTTTTTCSC--CCHHHHH
T ss_pred chHHHHHHhcCCCcEEEEEEEEEcCCcEEEEEeCCeEcCCCCHHHHHHHHHhcCCCEEEEEeecccCccCC--cCHHHHH
Confidence 334333 322211 11 00 1123456678899999999976544443322 3477888
Q ss_pred HHHHHhCCCCCcEEeecCcCCHHHHHHHHHcCcceeeeccccccCccCCCCHHHHHHHhc
Q 020013 157 MVVDLIGDRDIPIIAAGGIVDARGYVAALSLGAQGICLGTRFVASEESYAHPEYKRKLVE 216 (332)
Q Consensus 157 ~i~~~~~~~~iPviaaGGI~~~~~v~~al~~GA~gV~~GT~fl~t~Es~~~~~~k~~~~~ 216 (332)
.+.+.. ++|++++|||++.+++.++..+|++||.+||+|...+= .-+..|+.+.+
T Consensus 191 ~i~~~~---~~pii~~GGv~~~~di~~l~~~g~~gv~~gs~l~~~~~--~~~~lk~~l~~ 245 (252)
T d1h5ya_ 191 RVADSV---RIPVIASGGAGRVEHFYEAAAAGADAVLAASLFHFRVL--SIAQVKRYLKE 245 (252)
T ss_dssp HHHHHC---SSCEEEESCCCSHHHHHHHHHTTCSEEEESHHHHTTSS--CHHHHHHHHHH
T ss_pred HHHHhc---CCCEEEecCCCCHHHHHHHHHCCCCEEEEhhHHHcCCC--CHHHHHHHHHH
Confidence 888776 79999999999999999999999999999999965432 22445665554
|
| >d1vzwa1 c.1.2.1 (A:2-240) Phosphoribosylformimino-5-aminoimidazole carboxamide ribotite isomerase HisA {Streptomyces coelicolor [TaxId: 1902]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Ribulose-phoshate binding barrel family: Histidine biosynthesis enzymes domain: Phosphoribosylformimino-5-aminoimidazole carboxamide ribotite isomerase HisA species: Streptomyces coelicolor [TaxId: 1902]
Probab=97.97 E-value=2.9e-05 Score=66.53 Aligned_cols=141 Identities=18% Similarity=0.282 Sum_probs=89.2
Q ss_pred HHHHHHHhhcCCcEEEEeecCCCCHHHHHHHHhcCCcEEEEccC-CCcHHHHHHH-HhCCCEEEEec-------------
Q 020013 53 DLIRKTRSLTERPFGVGVVLAFPHNENIKAILSEKVAVLQVSWG-EYSEELVLEA-HSAGVKVVPQV------------- 117 (332)
Q Consensus 53 ~~i~~~r~~~~~p~gvnl~~~~~~~~~~~~~~~~~~~~I~~~~g-~~~~~~i~~~-~~~g~~v~~~v------------- 117 (332)
..++++......|+-++=-+. ..+.++.+.+.|++-|.++-. ...+++++.+ +..|-.++...
T Consensus 64 ~~i~~i~~~~~~pi~vGGGIr--s~~~~~~ll~~Ga~kVvi~s~~~~~~~~~~~~~~~~g~~~vv~~d~~~~~~~~~g~~ 141 (239)
T d1vzwa1 64 ALIAEVAQAMDIKVELSGGIR--DDDTLAAALATGCTRVNLGTAALETPEWVAKVIAEHGDKIAVGLDVRGTTLRGRGWT 141 (239)
T ss_dssp HHHHHHHHHCSSEEEEESSCC--SHHHHHHHHHTTCSEEEECHHHHHCHHHHHHHHHHHGGGEEEEEEEETTEECCSSSC
T ss_pred HHHHHHHhhcCcceEeecccc--cchhhhhhhccccccchhhHHhhhccccchhhhccCCceeeeeeccceeeecCccce
Confidence 345555555566766553332 367788899999999887511 1123344433 22222222110
Q ss_pred ----CCHHHHHHHHHcCCCEEEEecCCCCcccCCCCchhhhHHHHHHHhCCCCCcEEeecCcCCHHHHHHHHHc---Ccc
Q 020013 118 ----GSFDEARKAVNAGVDAIIVQGREAGGHVIGQDGLISLLPMVVDLIGDRDIPIIAAGGIVDARGYVAALSL---GAQ 190 (332)
Q Consensus 118 ----~s~~~a~~a~~~g~D~ivv~G~eaGGh~~~~~~~~~ll~~i~~~~~~~~iPviaaGGI~~~~~v~~al~~---GA~ 190 (332)
...+..++..+.|+.-|++..-+-=|...| ..+.++..+.+.. ++|++++|||++.+|+.++-.+ |++
T Consensus 142 ~~~~~~~~~~~~~~~~g~~eii~tdi~~dGt~~G--~d~~l~~~i~~~~---~~pvi~sGGv~s~~Di~~l~~l~~~g~~ 216 (239)
T d1vzwa1 142 RDGGDLYETLDRLNKEGCARYVVTDIAKDGTLQG--PNLELLKNVCAAT---DRPVVASGGVSSLDDLRAIAGLVPAGVE 216 (239)
T ss_dssp CCCCBHHHHHHHHHHTTCCCEEEEEC-------C--CCHHHHHHHHHTC---SSCEEEESCCCSHHHHHHHHTTGGGTEE
T ss_pred eeccccchhhhhhhhccccEEEEEeecccceecC--Ccchhhhhhhhcc---CceEEEECCCCCHHHHHHHHhhhhCCcc
Confidence 124566777888999999865533333212 3367888887766 7999999999999999888665 999
Q ss_pred eeeecccccc
Q 020013 191 GICLGTRFVA 200 (332)
Q Consensus 191 gV~~GT~fl~ 200 (332)
||.+||+|..
T Consensus 217 gvivg~al~~ 226 (239)
T d1vzwa1 217 GAIVGKALYA 226 (239)
T ss_dssp EEEECHHHHT
T ss_pred EeeEhHHHHC
Confidence 9999999854
|
| >d1z41a1 c.1.4.1 (A:2-338) NADPH dehydrogenase NamA {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: FMN-linked oxidoreductases family: FMN-linked oxidoreductases domain: NADPH dehydrogenase NamA species: Bacillus subtilis [TaxId: 1423]
Probab=97.81 E-value=0.00012 Score=65.73 Aligned_cols=79 Identities=20% Similarity=0.127 Sum_probs=58.3
Q ss_pred HHHHHHHcCCCEEEEecCCC--CcccCCCCchhhhHHHHHHHhCCCCCcEEeecCcCCHHHHHHHHHcC-cceeeecccc
Q 020013 122 EARKAVNAGVDAIIVQGREA--GGHVIGQDGLISLLPMVVDLIGDRDIPIIAAGGIVDARGYVAALSLG-AQGICLGTRF 198 (332)
Q Consensus 122 ~a~~a~~~g~D~ivv~G~ea--GGh~~~~~~~~~ll~~i~~~~~~~~iPviaaGGI~~~~~v~~al~~G-A~gV~~GT~f 198 (332)
.++...+.|+|++-+..... ..+...+.....+...+++.+ ++||++.|+|.+++.+.++|+-| ||.|.||..|
T Consensus 233 ~~~~l~~~g~d~~~~s~g~~~~~~~~~~~~~~~~~~~~ik~~~---~~pvi~~G~i~~~~~ae~~l~~g~~D~V~~gR~~ 309 (337)
T d1z41a1 233 FAKWMKEQGVDLIDCSSGALVHADINVFPGYQVSFAEKIREQA---DMATGAVGMITDGSMAEEILQNGRADLIFIGREL 309 (337)
T ss_dssp HHHHHHHTTCCEEEEECCCSSCCCCCCCTTTTHHHHHHHHHHH---CCEEEECSSCCSHHHHHHHHHTTSCSEEEECHHH
T ss_pred HHHHHHHcCCcccccccccccccccccCCcccHHHHHHHHHhc---CceEEEeCCcCCHHHHHHHHHCCCcceehhhHHH
Confidence 34456789999998853211 000001112355667788877 79999999999999999999998 9999999999
Q ss_pred ccCcc
Q 020013 199 VASEE 203 (332)
Q Consensus 199 l~t~E 203 (332)
++.++
T Consensus 310 iadPd 314 (337)
T d1z41a1 310 LRDPF 314 (337)
T ss_dssp HHCTT
T ss_pred HhCch
Confidence 98865
|
| >d1qpoa1 c.1.17.1 (A:117-285) Quinolinic acid phosphoribosyltransferase (Nicotinate-nucleotide pyrophosphorylase, NadC), C-terminal domain {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Nicotinate/Quinolinate PRTase C-terminal domain-like family: NadC C-terminal domain-like domain: Quinolinic acid phosphoribosyltransferase (Nicotinate-nucleotide pyrophosphorylase, NadC), C-terminal domain species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=97.76 E-value=6.4e-05 Score=60.79 Aligned_cols=92 Identities=8% Similarity=0.077 Sum_probs=67.9
Q ss_pred HHHHHHHHh--CCCEEEEecCCHHHHHHHHHcCCCEEEEecCCCCcccCCCCchhhhHHHHHHHhCCCCCcEEeecCcCC
Q 020013 100 EELVLEAHS--AGVKVVPQVGSFDEARKAVNAGVDAIIVQGREAGGHVIGQDGLISLLPMVVDLIGDRDIPIIAAGGIVD 177 (332)
Q Consensus 100 ~~~i~~~~~--~g~~v~~~v~s~~~a~~a~~~g~D~ivv~G~eaGGh~~~~~~~~~ll~~i~~~~~~~~iPviaaGGI~~ 177 (332)
.+.++.+++ ...++...|.+.++++.+.+.|+|.|.++++ ++...-..+..+.... ..+.+-++||| +
T Consensus 67 ~~~i~~~k~~~~~~~I~VEv~s~~q~~~a~~~~~diImLDN~-------sp~~~k~~v~~~~~~~--~~i~lEaSGgI-~ 136 (169)
T d1qpoa1 67 VDALRAVRNAAPDLPCEVEVDSLEQLDAVLPEKPELILLDNF-------AVWQTQTAVQRRDSRA--PTVMLESSGGL-S 136 (169)
T ss_dssp HHHHHHHHHHCTTSCEEEEESSHHHHHHHGGGCCSEEEEETC-------CHHHHHHHHHHHHHHC--TTCEEEEESSC-C
T ss_pred hhhhhhhhhhcCCCceEEEeccHHHhhhhhhcCCcEEEecCc-------ChHhHHHHHHHhhccC--CeeEEEEeCCC-C
Confidence 455665554 3567889999999999999999999999876 2212222333333222 25778899999 8
Q ss_pred HHHHHHHHHcCcceeeeccccccC
Q 020013 178 ARGYVAALSLGAQGICLGTRFVAS 201 (332)
Q Consensus 178 ~~~v~~al~~GA~gV~~GT~fl~t 201 (332)
.+++.++...|+|.+.+|+.....
T Consensus 137 ~~ni~~ya~~GvD~IS~galt~sa 160 (169)
T d1qpoa1 137 LQTAATYAETGVDYLAVGALTHSV 160 (169)
T ss_dssp TTTHHHHHHTTCSEEECGGGTSSB
T ss_pred HHHHHHHHHcCCCEEECCccccCC
Confidence 999999999999999999765543
|
| >d1qapa1 c.1.17.1 (A:130-296) Quinolinic acid phosphoribosyltransferase (Nicotinate-nucleotide pyrophosphorylase, NadC), C-terminal domain {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Nicotinate/Quinolinate PRTase C-terminal domain-like family: NadC C-terminal domain-like domain: Quinolinic acid phosphoribosyltransferase (Nicotinate-nucleotide pyrophosphorylase, NadC), C-terminal domain species: Salmonella typhimurium [TaxId: 90371]
Probab=97.58 E-value=0.00029 Score=56.50 Aligned_cols=87 Identities=21% Similarity=0.242 Sum_probs=66.7
Q ss_pred HHHHHHHHh--CCCEEEEecCCHHHHHHHHHcCCCEEEEecCCCCcccCCCCchhhhHHHHHHHhCCCCCcEEeecCcCC
Q 020013 100 EELVLEAHS--AGVKVVPQVGSFDEARKAVNAGVDAIIVQGREAGGHVIGQDGLISLLPMVVDLIGDRDIPIIAAGGIVD 177 (332)
Q Consensus 100 ~~~i~~~~~--~g~~v~~~v~s~~~a~~a~~~g~D~ivv~G~eaGGh~~~~~~~~~ll~~i~~~~~~~~iPviaaGGI~~ 177 (332)
.+.++.++. ...++-..|.+.++++.+.+.|+|.|.++++ + .+.+.+.++.+.. ++.+-++||| +
T Consensus 67 ~~~~~~~~~~~~~~~IeVEv~~~~~~~~a~~~g~diImLDN~-------~----pe~~~~av~~i~~-~~~lEaSGgI-~ 133 (167)
T d1qapa1 67 RQAVEKAFWLHPDVPVEVEVENLDELDDALKAGADIIMLDNF-------N----TDQMREAVKRVNG-QARLEVSGNV-T 133 (167)
T ss_dssp HHHHHHHHHHSTTSCEEEEESSHHHHHHHHHTTCSEEEESSC-------C----HHHHHHHHHTTCT-TCCEEECCCS-C
T ss_pred hhhhHHHhhcCCCceEEEecCcHHHHHHHHhcCCcEEEecCC-------C----HHHHHHHHHhcCC-ceEEEEeCCC-C
Confidence 445555443 4677888999999999999999999999765 1 2334444444432 6788899999 9
Q ss_pred HHHHHHHHHcCcceeeeccccc
Q 020013 178 ARGYVAALSLGAQGICLGTRFV 199 (332)
Q Consensus 178 ~~~v~~al~~GA~gV~~GT~fl 199 (332)
.+++.++...|+|.+.+|+-..
T Consensus 134 ~~ni~~ya~~GVD~IS~galt~ 155 (167)
T d1qapa1 134 AETLREFAETGVDFISVGALTK 155 (167)
T ss_dssp HHHHHHHHHTTCSEEECSHHHH
T ss_pred HHHHHHHHHcCCCEEECCcccC
Confidence 9999999999999999997643
|
| >d1djqa1 c.1.4.1 (A:1-340) Trimethylamine dehydrogenase, N-terminal domain {Methylophilus methylotrophus, w3a1 [TaxId: 17]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: FMN-linked oxidoreductases family: FMN-linked oxidoreductases domain: Trimethylamine dehydrogenase, N-terminal domain species: Methylophilus methylotrophus, w3a1 [TaxId: 17]
Probab=97.57 E-value=0.00044 Score=62.07 Aligned_cols=79 Identities=18% Similarity=0.143 Sum_probs=56.2
Q ss_pred HHHHHHHcCCCEEEEecC-CCCc-ccCC------CCchhhhHHHHHHHhCCCCCcEEeecCcCCHHHHHHHHHcC-ccee
Q 020013 122 EARKAVNAGVDAIIVQGR-EAGG-HVIG------QDGLISLLPMVVDLIGDRDIPIIAAGGIVDARGYVAALSLG-AQGI 192 (332)
Q Consensus 122 ~a~~a~~~g~D~ivv~G~-eaGG-h~~~------~~~~~~ll~~i~~~~~~~~iPviaaGGI~~~~~v~~al~~G-A~gV 192 (332)
......+.++|++-+... -... +... ......+.+.+++.+ ++|||+.|||.+++.+.++|+-| ||.|
T Consensus 242 ~~~~l~~~~vd~~~vs~g~~~~~~~~~~~~~~~~~~~~~~~~~~ik~~~---~~pVi~~G~i~~~~~a~~~l~~G~aDlV 318 (340)
T d1djqa1 242 KFVEMADSLVDMWDITIGDIAEWGEDAGPSRFYQQGHTIPWVKLVKQVS---KKPVLGVGRYTDPEKMIEIVTKGYADII 318 (340)
T ss_dssp HHHHHHTTTCSEEEEEESCSTTGGGTSCCTTTCCTTTTHHHHHHHHTTC---SSCEEECSCCCCHHHHHHHHHTTSCSBE
T ss_pred HHHHHHhhccceeeeeecccccccccccccccCCccccHHHHHHHHHHc---CCeEEEECCCCCHHHHHHHHHCCCccch
Confidence 344566889999977432 1111 1000 112344556666655 79999999999999999999998 9999
Q ss_pred eeccccccCcc
Q 020013 193 CLGTRFVASEE 203 (332)
Q Consensus 193 ~~GT~fl~t~E 203 (332)
.+|..|++.++
T Consensus 319 ~~gR~~iadPd 329 (340)
T d1djqa1 319 GCARPSIADPF 329 (340)
T ss_dssp EESHHHHHCTT
T ss_pred hhHHHHHHCcc
Confidence 99999998765
|
| >d1o4ua1 c.1.17.1 (A:104-273) Quinolinic acid phosphoribosyltransferase (Nicotinate-nucleotide pyrophosphorylase, NadC), C-terminal domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Nicotinate/Quinolinate PRTase C-terminal domain-like family: NadC C-terminal domain-like domain: Quinolinic acid phosphoribosyltransferase (Nicotinate-nucleotide pyrophosphorylase, NadC), C-terminal domain species: Thermotoga maritima [TaxId: 2336]
Probab=97.52 E-value=9.8e-05 Score=59.65 Aligned_cols=93 Identities=18% Similarity=0.238 Sum_probs=68.1
Q ss_pred cHHHHHHHHhC---CCEEEEecCCHHHHHHHHHcCCCEEEEecCCCCcccCCCCchhhhHHHHHHHhCCCCCcEEeecCc
Q 020013 99 SEELVLEAHSA---GVKVVPQVGSFDEARKAVNAGVDAIIVQGREAGGHVIGQDGLISLLPMVVDLIGDRDIPIIAAGGI 175 (332)
Q Consensus 99 ~~~~i~~~~~~---g~~v~~~v~s~~~a~~a~~~g~D~ivv~G~eaGGh~~~~~~~~~ll~~i~~~~~~~~iPviaaGGI 175 (332)
..+.++.+++. ..++...|.+.+++..+.+.|+|.|.++++ .+...-.+++.+.. .. .++.+-++|||
T Consensus 64 ~~~~~~~~~~~~~~~~~I~VEv~~~~e~~~a~~~g~d~i~LDn~-------~pe~~k~~~~~lk~-~~-~~i~lEaSGGI 134 (170)
T d1o4ua1 64 AERAVQEVRKIIPFTTKIEVEVENLEDALRAVEAGADIVMLDNL-------SPEEVKDISRRIKD-IN-PNVIVEVSGGI 134 (170)
T ss_dssp HHHHHHHHHTTSCTTSCEEEEESSHHHHHHHHHTTCSEEEEESC-------CHHHHHHHHHHHHH-HC-TTSEEEEEECC
T ss_pred HHHHHHHHHhhCCCCceEEEEeCcHHHHHHHHhcCccEEEEcCc-------ChhhHhHHHHHHHh-hC-CcEEEEEECCC
Confidence 45667777653 456888999999999999999999999865 22111222233322 22 26789999999
Q ss_pred CCHHHHHHHHHcCcceeeeccccccC
Q 020013 176 VDARGYVAALSLGAQGICLGTRFVAS 201 (332)
Q Consensus 176 ~~~~~v~~al~~GA~gV~~GT~fl~t 201 (332)
+.+++.++...|+|.+.+|+.....
T Consensus 135 -~~~ni~~~a~~GVD~Is~g~lt~~a 159 (170)
T d1o4ua1 135 -TEENVSLYDFETVDVISSSRLTLQE 159 (170)
T ss_dssp -CTTTGGGGCCTTCCEEEEGGGTSSC
T ss_pred -CHHHHHHHHHcCCCEEEcCccccCC
Confidence 8999999999999999999765543
|
| >d1qo2a_ c.1.2.1 (A:) Phosphoribosylformimino-5-aminoimidazole carboxamide ribotite isomerase HisA {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Ribulose-phoshate binding barrel family: Histidine biosynthesis enzymes domain: Phosphoribosylformimino-5-aminoimidazole carboxamide ribotite isomerase HisA species: Thermotoga maritima [TaxId: 2336]
Probab=97.50 E-value=0.00011 Score=62.79 Aligned_cols=137 Identities=15% Similarity=0.173 Sum_probs=91.0
Q ss_pred HHHHHhhcCCcEEEEeecCCCCHHHHHHHHhcCCcEEEEccCC-CcHHHHHHHHhCCCEEEEec----------------
Q 020013 55 IRKTRSLTERPFGVGVVLAFPHNENIKAILSEKVAVLQVSWGE-YSEELVLEAHSAGVKVVPQV---------------- 117 (332)
Q Consensus 55 i~~~r~~~~~p~gvnl~~~~~~~~~~~~~~~~~~~~I~~~~g~-~~~~~i~~~~~~g~~v~~~v---------------- 117 (332)
+..+++.. .|+-++=-+ ...+.++.+.+.|++-|.++... ..+.+++.+.+.+-.+...+
T Consensus 66 ~~~~~~~~-~pl~~gGGI--~s~~~~~~~~~~Ga~kVvi~s~~~~~~~~~~~~~~~~~~~~v~iD~~~~~~~~~g~~~~~ 142 (241)
T d1qo2a_ 66 LEKLSEFA-EHIQIGGGI--RSLDYAEKLRKLGYRRQIVSSKVLEDPSFLKSLREIDVEPVFSLDTRGGRVAFKGWLAEE 142 (241)
T ss_dssp HHHGGGGG-GGEEEESSC--CSHHHHHHHHHTTCCEEEECHHHHHCTTHHHHHHTTTCEEEEEEEEETTEECCTTCSSCS
T ss_pred eehhcccc-cchhhhhhh--hhhhhhhhccccccceEecCcccccCchhhhhhcccccceeeecccccccccccCcccce
Confidence 44444433 466554222 23677888999999998875210 11234555555444433221
Q ss_pred -CC-HHHHHHHHHcCCCEEEEecCCCCcccCCCCchhhhHHHHHHHhCCCCCcEEeecCcCCHHHHHHHHHcC------c
Q 020013 118 -GS-FDEARKAVNAGVDAIIVQGREAGGHVIGQDGLISLLPMVVDLIGDRDIPIIAAGGIVDARGYVAALSLG------A 189 (332)
Q Consensus 118 -~s-~~~a~~a~~~g~D~ivv~G~eaGGh~~~~~~~~~ll~~i~~~~~~~~iPviaaGGI~~~~~v~~al~~G------A 189 (332)
.+ .+..+...+.|+.-+++..-+.-|...| ..+.++..+.+.. ++|++++|||++.+|+.++..+| +
T Consensus 143 ~~~~~~~~~~~~~~g~~eii~~dId~dGt~~G--~d~~l~~~i~~~~---~~pvi~~GGv~s~~di~~l~~ig~~~~~~~ 217 (241)
T d1qo2a_ 143 EIDPVSLLKRLKEYGLEEIVHTEIEKDGTLQE--HDFSLTKKIAIEA---EVKVLAAGGISSENSLKTAQKVHTETNGLL 217 (241)
T ss_dssp CCCHHHHHHHHHTTTCCEEEEEETTHHHHTCC--CCHHHHHHHHHHH---TCEEEEESSCCSHHHHHHHHHHHHHTTTSE
T ss_pred eeehhHHHHHhhccccceEEEeehhhhhhccc--cchhhhhhhhccC---CceEEEECCCCCHHHHHHHHHccccccCCE
Confidence 12 3455667788999999976655444322 3477888888777 79999999999999999998765 8
Q ss_pred ceeeeccccc
Q 020013 190 QGICLGTRFV 199 (332)
Q Consensus 190 ~gV~~GT~fl 199 (332)
+||.+||+|.
T Consensus 218 ~gvivG~al~ 227 (241)
T d1qo2a_ 218 KGVIVGRAFL 227 (241)
T ss_dssp EEEEECHHHH
T ss_pred eeEEEHHHHH
Confidence 9999999985
|
| >d1ps9a1 c.1.4.1 (A:1-330) 2,4-dienoyl-CoA reductase, N-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: FMN-linked oxidoreductases family: FMN-linked oxidoreductases domain: 2,4-dienoyl-CoA reductase, N-terminal domain species: Escherichia coli [TaxId: 562]
Probab=97.43 E-value=0.00082 Score=59.99 Aligned_cols=78 Identities=23% Similarity=0.229 Sum_probs=53.0
Q ss_pred HHHHHHcCCCEEEEecC--CCCcccC-CCC--c-hhhhHHHHHHHhCCCCCcEEeecCcCCHHHHHHHHHcC-cceeeec
Q 020013 123 ARKAVNAGVDAIIVQGR--EAGGHVI-GQD--G-LISLLPMVVDLIGDRDIPIIAAGGIVDARGYVAALSLG-AQGICLG 195 (332)
Q Consensus 123 a~~a~~~g~D~ivv~G~--eaGGh~~-~~~--~-~~~ll~~i~~~~~~~~iPviaaGGI~~~~~v~~al~~G-A~gV~~G 195 (332)
++...+.|+|++-+... +.-.... .+. . ...+..++++.+ ++||++.|+|.+++.+.++|+-| ||.|.||
T Consensus 234 ~~~l~~~g~d~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ik~~~---~~pvi~~G~i~~~~~ae~~l~~g~~D~V~~g 310 (330)
T d1ps9a1 234 AQAIEAAGATIINTGIGWHEARIPTIATPVPRGAFSWVTRKLKGHV---SLPLVTTNRINDPQVADDILSRGDADMVSMA 310 (330)
T ss_dssp HHHHHHHTCSEEEEEECBTTCSSCSSSTTSCTTTTHHHHHHHTTSC---SSCEEECSSCCSHHHHHHHHHTTSCSEEEES
T ss_pred HHHHHHhhhhhhhcccccccccccccCCCCcchhHHHHHHHHHhhC---CceEEEeCCCCCHHHHHHHHHCCCcchhHhh
Confidence 34556789999987432 1111000 011 1 122334444444 79999999999999999999998 9999999
Q ss_pred cccccCcc
Q 020013 196 TRFVASEE 203 (332)
Q Consensus 196 T~fl~t~E 203 (332)
..|++.++
T Consensus 311 R~~iadP~ 318 (330)
T d1ps9a1 311 RPFLADAE 318 (330)
T ss_dssp THHHHCTT
T ss_pred HHHHhChh
Confidence 99998765
|
| >d1jvna1 c.1.2.1 (A:230-552) Cyclase subunit (or domain) of imidazoleglycerolphosphate synthase HisF {Baker's yeast (Saccharomyces cerevisiae), His7 [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Ribulose-phoshate binding barrel family: Histidine biosynthesis enzymes domain: Cyclase subunit (or domain) of imidazoleglycerolphosphate synthase HisF species: Baker's yeast (Saccharomyces cerevisiae), His7 [TaxId: 4932]
Probab=97.29 E-value=0.0003 Score=62.52 Aligned_cols=91 Identities=22% Similarity=0.261 Sum_probs=70.5
Q ss_pred HHHHHHHHHcCCCEEEEecCCCCcccCCCCchhhhHHHHHHHhCCCCCcEEeecCcCCHHHHHHHHH-cCcceeeecccc
Q 020013 120 FDEARKAVNAGVDAIIVQGREAGGHVIGQDGLISLLPMVVDLIGDRDIPIIAAGGIVDARGYVAALS-LGAQGICLGTRF 198 (332)
Q Consensus 120 ~~~a~~a~~~g~D~ivv~G~eaGGh~~~~~~~~~ll~~i~~~~~~~~iPviaaGGI~~~~~v~~al~-~GA~gV~~GT~f 198 (332)
.+-+..+.+.|+--|+++..+--|...| ..+.++..+.+.+ ++|||++||+++.+++.+++. .+++||.+|+.|
T Consensus 223 ~~~i~~~~~~G~GEIlltdIdrDGt~~G--~D~el~~~i~~~~---~iPiIasGGi~s~~di~~ll~~~~v~gv~~gs~~ 297 (323)
T d1jvna1 223 WELTRACEALGAGEILLNCIDKDGSNSG--YDLELIEHVKDAV---KIPVIASSGAGVPEHFEEAFLKTRADACLGAGMF 297 (323)
T ss_dssp HHHHHHHHHTTCCEEEECCGGGTTTCSC--CCHHHHHHHHHHC---SSCEEECSCCCSHHHHHHHHHHSCCSEEEESHHH
T ss_pred HHHhhhhhccCcceeEEEeecccccccc--cchhHHHHHHHhC---CCCEEEECCCCCHHHHHHHHHhCCCeEEEEhhHH
Confidence 3566778899999999976654454323 3488899988877 799999999999999999886 579999999999
Q ss_pred ccCccCCCCHHHHHHHhcC
Q 020013 199 VASEESYAHPEYKRKLVEM 217 (332)
Q Consensus 199 l~t~Es~~~~~~k~~~~~~ 217 (332)
-..+-+ -...|+.+.+.
T Consensus 298 ~~~~~s--i~elK~~L~~~ 314 (323)
T d1jvna1 298 HRGEFT--VNDVKEYLLEH 314 (323)
T ss_dssp HTTSCC--HHHHHHHHHHT
T ss_pred HcCCCC--HHHHHHHHHHC
Confidence 765443 34567777654
|
| >d1ub3a_ c.1.10.1 (A:) Deoxyribose-phosphate aldolase DeoC {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Aldolase family: Class I aldolase domain: Deoxyribose-phosphate aldolase DeoC species: Thermus thermophilus [TaxId: 274]
Probab=97.20 E-value=0.0048 Score=51.10 Aligned_cols=121 Identities=23% Similarity=0.337 Sum_probs=72.6
Q ss_pred cEEEEeecCCCC--------HHHHHHHHhcCCcEEEEcc-------CCCcHHH---HHHHHh-CC---CEEEEecC--CH
Q 020013 65 PFGVGVVLAFPH--------NENIKAILSEKVAVLQVSW-------GEYSEEL---VLEAHS-AG---VKVVPQVG--SF 120 (332)
Q Consensus 65 p~gvnl~~~~~~--------~~~~~~~~~~~~~~I~~~~-------g~~~~~~---i~~~~~-~g---~~v~~~v~--s~ 120 (332)
++.+...+.+|. ....+.+++.|++-|.+-. |+ ...+ ++.+++ .+ +||+.... +.
T Consensus 53 ~v~v~~VigFP~G~~~~~~k~~e~~~ai~~GA~EiD~V~n~~~~~~g~-~~~v~~ei~~v~~~~~~~~lKVIlEt~~L~~ 131 (211)
T d1ub3a_ 53 PFRLVTVVGFPLGYQEKEVKALEAALACARGADEVDMVLHLGRAKAGD-LDYLEAEVRAVREAVPQAVLKVILETGYFSP 131 (211)
T ss_dssp SSEEEEEESTTTCCSCHHHHHHHHHHHHHTTCSEEEEECCHHHHHTTC-HHHHHHHHHHHHHHSTTSEEEEECCGGGSCH
T ss_pred CCceEEEEecccccCcHHHHHHHHHHHHHcCCCeEEEeeccchhhcCC-HHHHHHHHHHHHHhccCCceEEEeccccCCH
Confidence 455555555542 2235567788998876531 22 2222 223332 22 45665433 55
Q ss_pred HHHH----HHHHcCCCEEEE-ecCCCCcccCCCCchhhhHHHHHHHhCCCCCcEEeecCcCCHHHHHHHHHcCcceee
Q 020013 121 DEAR----KAVNAGVDAIIV-QGREAGGHVIGQDGLISLLPMVVDLIGDRDIPIIAAGGIVDARGYVAALSLGAQGIC 193 (332)
Q Consensus 121 ~~a~----~a~~~g~D~ivv-~G~eaGGh~~~~~~~~~ll~~i~~~~~~~~iPviaaGGI~~~~~v~~al~~GA~gV~ 193 (332)
++.. .+.++|+|+|.. .|+..+| .+..-+..+++.+++ ++.|=++|||.|.+++.+++.+||+-+-
T Consensus 132 ~ei~~a~~~a~~aGadfiKTSTG~~~~g------at~e~v~~m~~~~~~-~~~iKasGGIrt~~~a~~~l~aGa~riG 202 (211)
T d1ub3a_ 132 EEIARLAEAAIRGGADFLKTSTGFGPRG------ASLEDVALLVRVAQG-RAQVKAAGGIRDRETALRMLKAGASRLG 202 (211)
T ss_dssp HHHHHHHHHHHHHTCSEEECCCSSSSCC------CCHHHHHHHHHHHTT-SSEEEEESSCCSHHHHHHHHHTTCSEEE
T ss_pred HHHHHHHHHHHHhccceEEecCCCCCCC------CCHHHHHHHHHHhCC-CceEECcCCCCCHHHHHHHHHHhhhHhc
Confidence 5443 456889999976 2332211 234555555565543 6889999999999999999999998543
|
| >d1gvfa_ c.1.10.2 (A:) Tagatose-1,6-bisphosphate aldolase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Aldolase family: Class II FBP aldolase domain: Tagatose-1,6-bisphosphate aldolase species: Escherichia coli [TaxId: 562]
Probab=96.92 E-value=0.032 Score=48.05 Aligned_cols=176 Identities=16% Similarity=0.180 Sum_probs=114.2
Q ss_pred CCCcHHHHHHHHhCC---Cceee-cC-C---CCCCHHHHHHHHHHHHhhcCCcEEEEeecCCCCHHHHHHHHhcCCcEEE
Q 020013 21 DISGPELVAAVANAG---GLGLL-RA-P---DWEAPDYLRDLIRKTRSLTERPFGVGVVLAFPHNENIKAILSEKVAVLQ 92 (332)
Q Consensus 21 g~s~~~la~avs~aG---glG~i-~~-~---~~~~~e~~~~~i~~~r~~~~~p~gvnl~~~~~~~~~~~~~~~~~~~~I~ 92 (332)
.+.+.+.+.+|-+|- ..++| .. . .+...+.+...+..+.+....|+.+++=-.. +.+.+..+++.|.+.|-
T Consensus 23 Nv~~~e~~~avi~AAe~~~sPvIlq~~~~~~~~~~~~~~~~~~~~~a~~~~vpV~lHlDH~~-~~e~i~~ai~~GftSVM 101 (284)
T d1gvfa_ 23 NIHNAETIQAILEVCSEMRSPVILAGTPGTFKHIALEEIYALCSAYSTTYNMPLALHLDHHE-SLDDIRRKVHAGVRSAM 101 (284)
T ss_dssp ECCSHHHHHHHHHHHHHHTCCCEEEECTTHHHHSCHHHHHHHHHHHHHHTTSCBEEEEEEEC-CHHHHHHHHHTTCCEEE
T ss_pred EECCHHHHHHHHHHHHHHCCCEEEEcCHhHHhhCCHHHHHHHHHHHHHhcCCeEEeeecccc-chHHHHHHHhcCCCeEE
Confidence 355667777766552 12222 11 1 1345666777777776667889888863322 36778888999999888
Q ss_pred EccCCCcH--------HHHHHHHhCCCEEEE-------------------ecCCHHHHHHHH-HcCCCEEEE-ecCCCCc
Q 020013 93 VSWGEYSE--------ELVLEAHSAGVKVVP-------------------QVGSFDEARKAV-NAGVDAIIV-QGREAGG 143 (332)
Q Consensus 93 ~~~g~~~~--------~~i~~~~~~g~~v~~-------------------~v~s~~~a~~a~-~~g~D~ivv-~G~eaGG 143 (332)
+.....|. ++++.++..|+.|=. ..+++++++... +.|+|.+-+ .|.-=|-
T Consensus 102 iD~S~lp~eeNi~~t~~vv~~ah~~gv~VE~ElG~v~g~ed~~~~~~~~~~~T~peea~~Fv~~TgvD~LAvaiGt~HG~ 181 (284)
T d1gvfa_ 102 IDGSHFPFAENVKLVKSVVDFCHSQDCSVEAELGRLGGVEDDMSVDAESAFLTDPQEAKRFVELTGVDSLAVAIGTAHGL 181 (284)
T ss_dssp ECCTTSCHHHHHHHHHHHHHHHHHTTCEEEEEESCCC-----------CCSSCCHHHHHHHHHHHCCSEEEECSSCCSSC
T ss_pred EECCCCCHHHHHHHHHHHHHHHHhhccceeeeeeeeccccccccccccccccCCHHHHHHHHHHhCCCEEeeecCceeec
Confidence 76433332 345556666665521 125788888765 569999877 2332222
Q ss_pred ccCCCCchhhhHHHHHHHhCCCCCcEEeecCcCC-HHHHHHHHHcCcceeeecccccc
Q 020013 144 HVIGQDGLISLLPMVVDLIGDRDIPIIAAGGIVD-ARGYVAALSLGAQGICLGTRFVA 200 (332)
Q Consensus 144 h~~~~~~~~~ll~~i~~~~~~~~iPviaaGGI~~-~~~v~~al~~GA~gV~~GT~fl~ 200 (332)
....+.-.+.++.++.+.+ ++|++.-||=+. .+++.+++..|..-|-++|.+-.
T Consensus 182 y~~~p~l~~~~L~~i~~~~---~vPLVlHGgSG~~~e~i~~ai~~Gi~KiNi~T~l~~ 236 (284)
T d1gvfa_ 182 YSKTPKIDFQRLAEIREVV---DVPLVLHGASDVPDEFVRRTIELGVTKVNVATELKI 236 (284)
T ss_dssp CSSCCCCCHHHHHHHHHHC---CSCEEECCCTTCCHHHHHHHHHTTEEEEEECHHHHH
T ss_pred cCCCCccccchhhhhhccc---cCCeEeeCCCCCCHHHHHHHHHcCeEEEEechHHHH
Confidence 2222334578899999888 799998775444 46688999999999999998654
|
| >d1viza_ c.1.4.1 (A:) PcrB protein homolog YerE {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: FMN-linked oxidoreductases family: FMN-linked oxidoreductases domain: PcrB protein homolog YerE species: Bacillus subtilis [TaxId: 1423]
Probab=96.78 E-value=0.0016 Score=54.86 Aligned_cols=46 Identities=17% Similarity=0.169 Sum_probs=36.8
Q ss_pred hhHHHHHHHhCCCCCcEEeecCcCCHHHHHHHHHcCcceeeeccccccC
Q 020013 153 SLLPMVVDLIGDRDIPIIAAGGIVDARGYVAALSLGAQGICLGTRFVAS 201 (332)
Q Consensus 153 ~ll~~i~~~~~~~~iPviaaGGI~~~~~v~~al~~GA~gV~~GT~fl~t 201 (332)
..+..+++... ++|++..+||++++++.++. .+||||++||++...
T Consensus 170 ~~~~~v~~~~~--~~Pl~VGFGIst~e~a~~v~-~~ADgVVVGSAiv~~ 215 (229)
T d1viza_ 170 EAVKKTKAVLE--TSTLFYGGGIKDAETAKQYA-EHADVIVVGNAVYED 215 (229)
T ss_dssp HHHHHHHHTCS--SSEEEEESSCCSHHHHHHHH-TTCSEEEECTHHHHC
T ss_pred hhHHHHHhhcc--CcceEEEcccCCHHHHHHHH-cCCCEEEECHHHHhh
Confidence 44555555442 69999999999999998866 699999999998643
|
| >d1thfd_ c.1.2.1 (D:) Cyclase subunit (or domain) of imidazoleglycerolphosphate synthase HisF {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Ribulose-phoshate binding barrel family: Histidine biosynthesis enzymes domain: Cyclase subunit (or domain) of imidazoleglycerolphosphate synthase HisF species: Thermotoga maritima [TaxId: 2336]
Probab=96.77 E-value=0.0011 Score=56.80 Aligned_cols=86 Identities=20% Similarity=0.271 Sum_probs=62.7
Q ss_pred HHHHHHHHcCCCEEEEecCCCCcccCCCCchhhhHHHHHHHhCCCCCcEEeecCcCCHHHHHHHHHcCcceeeecccccc
Q 020013 121 DEARKAVNAGVDAIIVQGREAGGHVIGQDGLISLLPMVVDLIGDRDIPIIAAGGIVDARGYVAALSLGAQGICLGTRFVA 200 (332)
Q Consensus 121 ~~a~~a~~~g~D~ivv~G~eaGGh~~~~~~~~~ll~~i~~~~~~~~iPviaaGGI~~~~~v~~al~~GA~gV~~GT~fl~ 200 (332)
+.|+...+.|+|.+.+....+. . .+....+.++.++.+.. .+|+...|||.+.+++..++.+||+-|++||..+.
T Consensus 34 ~~a~~~~~~g~dei~ivDld~~-~-~~~~~~~~~i~~i~~~~---~~pi~vgGGIr~~e~i~~~l~~Ga~kviigs~~~~ 108 (253)
T d1thfd_ 34 ELGKFYSEIGIDELVFLDITAS-V-EKRKTMLELVEKVAEQI---DIPFTVGGGIHDFETASELILRGADKVSINTAAVE 108 (253)
T ss_dssp HHHHHHHHTTCCEEEEEESSCS-S-SHHHHHHHHHHHHHTTC---CSCEEEESSCCSHHHHHHHHHTTCSEEEESHHHHH
T ss_pred HHHHHHHHcCCCEEEEEeeccc-c-cCcccHHHHHHHHHhcc---CccceeecccccchhhhhHHhcCCCEEEEChHHhh
Confidence 4456667789999988554321 1 01123466777777655 79999999999999999999999999999999886
Q ss_pred CccCCCCHHHHHHHhc
Q 020013 201 SEESYAHPEYKRKLVE 216 (332)
Q Consensus 201 t~Es~~~~~~k~~~~~ 216 (332)
.++ ..++....
T Consensus 109 n~~-----~l~~~~~~ 119 (253)
T d1thfd_ 109 NPS-----LITQIAQT 119 (253)
T ss_dssp CTH-----HHHHHHHH
T ss_pred ChH-----HHHHHHHH
Confidence 543 45555544
|
| >d1o0ya_ c.1.10.1 (A:) Deoxyribose-phosphate aldolase DeoC {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Aldolase family: Class I aldolase domain: Deoxyribose-phosphate aldolase DeoC species: Thermotoga maritima [TaxId: 2336]
Probab=96.74 E-value=0.017 Score=48.93 Aligned_cols=108 Identities=22% Similarity=0.263 Sum_probs=64.9
Q ss_pred HHHHHhcCCcEEEEcc-------CCCcHH---HHHHHHhC--C--CEEEEecC--CHHHH----HHHHHcCCCEEEE-ec
Q 020013 80 IKAILSEKVAVLQVSW-------GEYSEE---LVLEAHSA--G--VKVVPQVG--SFDEA----RKAVNAGVDAIIV-QG 138 (332)
Q Consensus 80 ~~~~~~~~~~~I~~~~-------g~~~~~---~i~~~~~~--g--~~v~~~v~--s~~~a----~~a~~~g~D~ivv-~G 138 (332)
++.+++.|++-|.+-. |+ ... .++.+++. + +||+.... +.++. +.+.++|+|+|.. .|
T Consensus 109 a~~Ai~~GAdEID~Vin~~~l~~g~-~~~v~~ei~~v~~~~~~~~lKVIlEt~~L~~~e~~~a~~ia~~aGadfvKTSTG 187 (251)
T d1o0ya_ 109 AIFAVESGADEIDMVINVGMLKAKE-WEYVYEDIRSVVESVKGKVVKVIIETCYLDTEEKIAACVISKLAGAHFVKTSTG 187 (251)
T ss_dssp HHHHHHHTCSEEEEECCHHHHHTTC-HHHHHHHHHHHHHHTTTSEEEEECCGGGCCHHHHHHHHHHHHHTTCSEEECCCS
T ss_pred HHHHHHcCCceEEEEeccchhhcCC-HHHHHHHHHHHHHHhcccceeeeecccccCcHHHHHHHHHHHHhCcceeeccCC
Confidence 4567778988776531 22 222 22333322 3 34554332 33333 3467899999976 34
Q ss_pred CCCCcccCCCCchhhhHHHHHHHhCCCCCcEEeecCcCCHHHHHHHHHcCcceeeeccc
Q 020013 139 REAGGHVIGQDGLISLLPMVVDLIGDRDIPIIAAGGIVDARGYVAALSLGAQGICLGTR 197 (332)
Q Consensus 139 ~eaGGh~~~~~~~~~ll~~i~~~~~~~~iPviaaGGI~~~~~v~~al~~GA~gV~~GT~ 197 (332)
+..+| .+..-+..+++.+++ ++.|=++|||.|.+++.+++.+||+-+ ||.
T Consensus 188 f~~~g------at~e~V~~m~~~~~~-~~giKasGGIrt~~~a~~~i~aGa~ri--GtS 237 (251)
T d1o0ya_ 188 FGTGG------ATAEDVHLMKWIVGD-EMGVKASGGIRTFEDAVKMIMYGADRI--GTS 237 (251)
T ss_dssp SSSCC------CCHHHHHHHHHHHCT-TSEEEEESSCCSHHHHHHHHHTTCSEE--EES
T ss_pred CCCCC------cCHHHHHHHHHHhCC-CceEeccCCcCCHHHHHHHHHHhhHHh--CCC
Confidence 43332 223344444444432 688999999999999999999999964 553
|
| >d1h5ya_ c.1.2.1 (A:) Cyclase subunit (or domain) of imidazoleglycerolphosphate synthase HisF {Archaeon Pyrobaculum aerophilum [TaxId: 13773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Ribulose-phoshate binding barrel family: Histidine biosynthesis enzymes domain: Cyclase subunit (or domain) of imidazoleglycerolphosphate synthase HisF species: Archaeon Pyrobaculum aerophilum [TaxId: 13773]
Probab=96.73 E-value=0.0013 Score=56.31 Aligned_cols=89 Identities=19% Similarity=0.280 Sum_probs=65.5
Q ss_pred HHHHHHHHHcCCCEEEEecCCCCcccCCCCchhhhHHHHHHHhCCCCCcEEeecCcCCHHHHHHHHHcCcceeeeccccc
Q 020013 120 FDEARKAVNAGVDAIIVQGREAGGHVIGQDGLISLLPMVVDLIGDRDIPIIAAGGIVDARGYVAALSLGAQGICLGTRFV 199 (332)
Q Consensus 120 ~~~a~~a~~~g~D~ivv~G~eaGGh~~~~~~~~~ll~~i~~~~~~~~iPviaaGGI~~~~~v~~al~~GA~gV~~GT~fl 199 (332)
.+.|+...+.|+|.+.+..-.+. ..+....+.++.++.+.. .+|+...|||.+.+++..++.+||+-|.+||..+
T Consensus 35 ~~~a~~~~~~gadei~ivDl~~~--~~~~~~~~~~i~~i~~~~---~~pi~~gGGIr~~e~~~~ll~~G~~kVii~s~~~ 109 (252)
T d1h5ya_ 35 VEMAVRYEEEGADEIAILDITAA--PEGRATFIDSVKRVAEAV---SIPVLVGGGVRSLEDATTLFRAGADKVSVNTAAV 109 (252)
T ss_dssp HHHHHHHHHTTCSCEEEEECCCC--TTTHHHHHHHHHHHHHHC---SSCEEEESSCCSHHHHHHHHHHTCSEEEESHHHH
T ss_pred HHHHHHHHHCCCCEEEEEecccc--ccccccHHHHHHHHHhhc---CCcceeecccchhhhhhhHhhcCCcEEEeccccc
Confidence 35667777899998876443221 111124467788888776 7999999999999999999999999999999988
Q ss_pred cCccCCCCHHHHHHHhcCC
Q 020013 200 ASEESYAHPEYKRKLVEMD 218 (332)
Q Consensus 200 ~t~Es~~~~~~k~~~~~~~ 218 (332)
..++ ..++....-.
T Consensus 110 ~~~~-----~~~~~~~~~G 123 (252)
T d1h5ya_ 110 RNPQ-----LVALLAREFG 123 (252)
T ss_dssp HCTH-----HHHHHHHHHC
T ss_pred CCcc-----hHHHHHHhcC
Confidence 7644 5555555433
|
| >d2f6ua1 c.1.4.1 (A:1001-1231) (S)-3-O-geranylgeranylglyceryl phosphate synthase {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: FMN-linked oxidoreductases family: FMN-linked oxidoreductases domain: (S)-3-O-geranylgeranylglyceryl phosphate synthase species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]
Probab=96.71 E-value=0.00061 Score=57.64 Aligned_cols=44 Identities=20% Similarity=0.247 Sum_probs=35.7
Q ss_pred hhHHHHHHHhCCCCCcEEeecCcCCHHHHHHHHHcCcceeeeccccc
Q 020013 153 SLLPMVVDLIGDRDIPIIAAGGIVDARGYVAALSLGAQGICLGTRFV 199 (332)
Q Consensus 153 ~ll~~i~~~~~~~~iPviaaGGI~~~~~v~~al~~GA~gV~~GT~fl 199 (332)
..+..+++... ++||+..+||++++++.++.+ +||||++||+|.
T Consensus 176 ~~~~~~~k~~~--~~Pv~VGFGI~s~e~a~~~~~-~ADgvIVGSaiv 219 (231)
T d2f6ua1 176 ELVAEVKKVLD--KARLFYGGGIDSREKAREMLR-YADTIIVGNVIY 219 (231)
T ss_dssp HHHHHHHHHCS--SSEEEEESCCCSHHHHHHHHH-HSSEEEECHHHH
T ss_pred hHHHHHHHhcC--CCCEEEEeCcCCHHHHHHHHh-cCCEEEEChHHh
Confidence 34445555542 699999999999999998776 799999999984
|
| >d1eepa_ c.1.5.1 (A:) Inosine monophosphate dehydrogenase (IMPDH) {Lyme disease spirochete (Borrelia burgdorferi) [TaxId: 139]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Inosine monophosphate dehydrogenase (IMPDH) family: Inosine monophosphate dehydrogenase (IMPDH) domain: Inosine monophosphate dehydrogenase (IMPDH) species: Lyme disease spirochete (Borrelia burgdorferi) [TaxId: 139]
Probab=96.71 E-value=0.0012 Score=60.13 Aligned_cols=71 Identities=24% Similarity=0.452 Sum_probs=54.1
Q ss_pred CHHHHHHHHHcCCCEEEEecCCCCcccCCCCchhhhHHHHHHHhCCCCCcEEeecCcCCHHHHHHHHHcCcceeeeccc
Q 020013 119 SFDEARKAVNAGVDAIIVQGREAGGHVIGQDGLISLLPMVVDLIGDRDIPIIAAGGIVDARGYVAALSLGAQGICLGTR 197 (332)
Q Consensus 119 s~~~a~~a~~~g~D~ivv~G~eaGGh~~~~~~~~~ll~~i~~~~~~~~iPviaaGGI~~~~~v~~al~~GA~gV~~GT~ 197 (332)
+.+.+..+.++|+|+|+++... ||. .....++..+++..+ ++||| +|+|.|++.+...+..|||+|-+|-.
T Consensus 152 ~~~ra~~L~~aG~D~ivID~Ah--G~s---~~~~~~i~~ik~~~~--~v~vI-aGNV~T~e~a~~L~~~GaD~VkVGiG 222 (388)
T d1eepa_ 152 TIERVEELVKAHVDILVIDSAH--GHS---TRIIELIKKIKTKYP--NLDLI-AGNIVTKEAALDLISVGADCLKVGIG 222 (388)
T ss_dssp HHHHHHHHHHTTCSEEEECCSC--CSS---HHHHHHHHHHHHHCT--TCEEE-EEEECSHHHHHHHHTTTCSEEEECSS
T ss_pred HHHHHHHHHhhccceeeeeccc--cch---HHHHHHHHHHHHHCC--CCcee-eccccCHHHHHHHHhcCCCeeeeccc
Confidence 3566777889999999998642 443 344677777777653 67765 58888999999999999999987643
|
| >d1jvna1 c.1.2.1 (A:230-552) Cyclase subunit (or domain) of imidazoleglycerolphosphate synthase HisF {Baker's yeast (Saccharomyces cerevisiae), His7 [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Ribulose-phoshate binding barrel family: Histidine biosynthesis enzymes domain: Cyclase subunit (or domain) of imidazoleglycerolphosphate synthase HisF species: Baker's yeast (Saccharomyces cerevisiae), His7 [TaxId: 4932]
Probab=96.67 E-value=0.001 Score=58.94 Aligned_cols=80 Identities=20% Similarity=0.294 Sum_probs=57.6
Q ss_pred HHHHHHHHHcCCCEEEEecCCC--CcccCCCCchhhhHHHHHHHhCCCCCcEEeecCcCCHHH-----------HHHHHH
Q 020013 120 FDEARKAVNAGVDAIIVQGREA--GGHVIGQDGLISLLPMVVDLIGDRDIPIIAAGGIVDARG-----------YVAALS 186 (332)
Q Consensus 120 ~~~a~~a~~~g~D~ivv~G~ea--GGh~~~~~~~~~ll~~i~~~~~~~~iPviaaGGI~~~~~-----------v~~al~ 186 (332)
++.|+...+.|+|-|.+..-.+ +|.. .....+.++.++.+.+ .+|+-..|||.+-++ +.+++.
T Consensus 51 ~~~a~~~~~~gaDeL~ivDidas~~~~~-~~~~~~~~I~~i~~~~---~vPi~vGGGIrsi~di~~~~~~~~e~A~~ll~ 126 (323)
T d1jvna1 51 VQLAQKYYQQGADEVTFLNITSFRDCPL-KDTPMLEVLKQAAKTV---FVPLTVGGGIKDIVDVDGTKIPALEVASLYFR 126 (323)
T ss_dssp HHHHHHHHHTTCSEEEEEEEC---CCCG-GGCHHHHHHHHHTTTC---CSCEEEESSCSCEECTTCCEECHHHHHHHHHH
T ss_pred HHHHHHHHHCCCCEEEEEECcCCCCCcC-CCchHHHHHHhhcccc---ceeEEEecCcccHHHhhhccchhhHHHHHHHH
Confidence 3566777889999998744322 1111 1234466677766655 799999999999655 578999
Q ss_pred cCcceeeeccccccCcc
Q 020013 187 LGAQGICLGTRFVASEE 203 (332)
Q Consensus 187 ~GA~gV~~GT~fl~t~E 203 (332)
+|||-|.+||+.+..+|
T Consensus 127 ~GadKVvI~T~ai~~p~ 143 (323)
T d1jvna1 127 SGADKVSIGTDAVYAAE 143 (323)
T ss_dssp HTCSEEEECHHHHHHHH
T ss_pred cCCCeEEechHHhhChH
Confidence 99999999999886544
|
| >d1vzwa1 c.1.2.1 (A:2-240) Phosphoribosylformimino-5-aminoimidazole carboxamide ribotite isomerase HisA {Streptomyces coelicolor [TaxId: 1902]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Ribulose-phoshate binding barrel family: Histidine biosynthesis enzymes domain: Phosphoribosylformimino-5-aminoimidazole carboxamide ribotite isomerase HisA species: Streptomyces coelicolor [TaxId: 1902]
Probab=96.66 E-value=0.0014 Score=55.66 Aligned_cols=77 Identities=25% Similarity=0.348 Sum_probs=57.9
Q ss_pred HHHHHHHHHcCCCEEEEecCCCCcccCCCCchhhhHHHHHHHhCCCCCcEEeecCcCCHHHHHHHHHcCcceeeeccccc
Q 020013 120 FDEARKAVNAGVDAIIVQGREAGGHVIGQDGLISLLPMVVDLIGDRDIPIIAAGGIVDARGYVAALSLGAQGICLGTRFV 199 (332)
Q Consensus 120 ~~~a~~a~~~g~D~ivv~G~eaGGh~~~~~~~~~ll~~i~~~~~~~~iPviaaGGI~~~~~v~~al~~GA~gV~~GT~fl 199 (332)
.+.++...+.|+|.+.+.--++- . +......++..+.+.. .+|+...|||.+.+++.+++..||+-|.+||..+
T Consensus 34 ~~~a~~~~~~ga~~l~i~DLd~~--~-~~~~~~~~i~~i~~~~---~~pi~vGGGIrs~~~~~~ll~~Ga~kVvi~s~~~ 107 (239)
T d1vzwa1 34 LEAALAWQRSGAEWLHLVDLDAA--F-GTGDNRALIAEVAQAM---DIKVELSGGIRDDDTLAAALATGCTRVNLGTAAL 107 (239)
T ss_dssp HHHHHHHHHTTCSEEEEEEHHHH--H-TSCCCHHHHHHHHHHC---SSEEEEESSCCSHHHHHHHHHTTCSEEEECHHHH
T ss_pred HHHHHHHHHcCCCEEEEEeeccc--c-cccchHHHHHHHHhhc---CcceEeecccccchhhhhhhccccccchhhHHhh
Confidence 35566667889999887432211 0 0112356778888776 7999999999999999999999999999999877
Q ss_pred cCc
Q 020013 200 ASE 202 (332)
Q Consensus 200 ~t~ 202 (332)
..+
T Consensus 108 ~~~ 110 (239)
T d1vzwa1 108 ETP 110 (239)
T ss_dssp HCH
T ss_pred hcc
Confidence 553
|
| >d1ka9f_ c.1.2.1 (F:) Cyclase subunit (or domain) of imidazoleglycerolphosphate synthase HisF {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Ribulose-phoshate binding barrel family: Histidine biosynthesis enzymes domain: Cyclase subunit (or domain) of imidazoleglycerolphosphate synthase HisF species: Thermus thermophilus [TaxId: 274]
Probab=96.62 E-value=0.0014 Score=56.06 Aligned_cols=89 Identities=20% Similarity=0.241 Sum_probs=63.3
Q ss_pred CCH-HHHHHHHHcCCCEEEEecCCCCcccCCCCchhhhHHHHHHHhCCCCCcEEeecCcCCHHHHHHHHHcCcceeeecc
Q 020013 118 GSF-DEARKAVNAGVDAIIVQGREAGGHVIGQDGLISLLPMVVDLIGDRDIPIIAAGGIVDARGYVAALSLGAQGICLGT 196 (332)
Q Consensus 118 ~s~-~~a~~a~~~g~D~ivv~G~eaGGh~~~~~~~~~ll~~i~~~~~~~~iPviaaGGI~~~~~v~~al~~GA~gV~~GT 196 (332)
+++ +.|+...+.|+|-+.+.--.+. ..+....+.++..+.+.. .+|+...|||.+.+++..++.+||+-|++||
T Consensus 30 gdP~~~a~~~~~~g~dei~iiDl~~~--~~~~~~~~~~i~~i~~~~---~~pi~vgGGIrs~e~~~~ll~~Ga~kVii~s 104 (251)
T d1ka9f_ 30 GDPVEAARAYDEAGADELVFLDISAT--HEERAILLDVVARVAERV---FIPLTVGGGVRSLEDARKLLLSGADKVSVNS 104 (251)
T ss_dssp TCHHHHHHHHHHHTCSCEEEEECCSS--TTCHHHHHHHHHHHHTTC---CSCEEEESSCCSHHHHHHHHHHTCSEEEECH
T ss_pred CCHHHHHHHHHHcCCCEEEEEecccc--cccchhHHHHHHHHHhcc---CcchheeccccCHHHHHHHHHcCCCEEEECc
Confidence 344 4456667789998887543221 111123466777777765 7999999999999999999999999999999
Q ss_pred ccccCccCCCCHHHHHHHhc
Q 020013 197 RFVASEESYAHPEYKRKLVE 216 (332)
Q Consensus 197 ~fl~t~Es~~~~~~k~~~~~ 216 (332)
..+..++ ..++....
T Consensus 105 ~~~~n~~-----~i~~~~~~ 119 (251)
T d1ka9f_ 105 AAVRRPE-----LIRELADH 119 (251)
T ss_dssp HHHHCTH-----HHHHHHHH
T ss_pred hhhhCHH-----HHHHHHHh
Confidence 9876543 45554443
|
| >d1ojxa_ c.1.10.1 (A:) Archaeal fructose 1,6-bisphosphate aldolase {Archaeon Thermoproteus tenax [TaxId: 2271]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Aldolase family: Class I aldolase domain: Archaeal fructose 1,6-bisphosphate aldolase species: Archaeon Thermoproteus tenax [TaxId: 2271]
Probab=96.52 E-value=0.025 Score=47.96 Aligned_cols=171 Identities=19% Similarity=0.263 Sum_probs=96.9
Q ss_pred CccceecCCCCCCCC-----cHH-HHHHHHhCCCceeecCCCCCCHHHHHHHHHHHHhhcCCcEEEEeecCC------CC
Q 020013 9 FEYGIVQAPLGPDIS-----GPE-LVAAVANAGGLGLLRAPDWEAPDYLRDLIRKTRSLTERPFGVGVVLAF------PH 76 (332)
Q Consensus 9 ~~~Pii~apM~~g~s-----~~~-la~avs~aGglG~i~~~~~~~~e~~~~~i~~~r~~~~~p~gvnl~~~~------~~ 76 (332)
+++++..+|+. +.. +++ ++..++.+|.=+++. ++..++. +.. .+.+..+.+.... ++
T Consensus 21 ~DHg~~~gp~~-gl~~~~~~d~~~~~~~~~~~g~Da~~~-----~~G~~~~----~~~-~~~~~~~~~~~~~~~~~~~~~ 89 (251)
T d1ojxa_ 21 YDHGIEHGPAD-FMDNPDSADPEYILRLARDAGFDGVVF-----QRGIAEK----YYD-GSVPLILKLNGKTTLYNGEPV 89 (251)
T ss_dssp CCHHHHTCGGG-GGSSGGGGCHHHHHHHHHHHTCSEEEE-----CHHHHHH----HCC-SSSCEEEECEECCTTCCSSCC
T ss_pred cCCCcccCCcc-cccCccccCHHHHHHHHHhcCCChhhc-----chHHHHH----hcc-cccCeeEEEecCcccccccch
Confidence 67777778876 454 333 444555555555543 3443322 211 2333433322211 11
Q ss_pred ---HHHHHHHHhcCCcEEEEc--cCCCcH--------HHHHHHHhCCCEEEEecC----------CHH----HHHHHHHc
Q 020013 77 ---NENIKAILSEKVAVLQVS--WGEYSE--------ELVLEAHSAGVKVVPQVG----------SFD----EARKAVNA 129 (332)
Q Consensus 77 ---~~~~~~~~~~~~~~I~~~--~g~~~~--------~~i~~~~~~g~~v~~~v~----------s~~----~a~~a~~~ 129 (332)
...++.++..|++.|.+. +|.+.+ ++++.+++.|++++..+- +++ .++.+.+.
T Consensus 90 ~~~~~sve~a~rlGadaV~~~v~~g~~~e~~~l~~~~~v~~e~~~~glP~v~e~~p~g~~~~~~~~~~~v~~aaria~El 169 (251)
T d1ojxa_ 90 SVANCSVEEAVSLGASAVGYTIYPGSGFEWKMFEELARIKRDAVKFDLPLVVWSYPRGGKVVNETAPEIVAYAARIALEL 169 (251)
T ss_dssp CEESSCHHHHHHTTCSEEEEEECTTSTTHHHHHHHHHHHHHHHHHHTCCEEEEECCCSTTCCCTTCHHHHHHHHHHHHHH
T ss_pred hhhccCHHHHHhchhceEEEEEeCCCCchHHHHHHHHHHHHHHHHcCCeEEEEEeecCCccccCCCHHHHHHHHHHHHHh
Confidence 123677888999998653 454322 344556778999875431 333 24456789
Q ss_pred CCCEEEEecCCCCcccCCCCchhhhHHHHHHHhCCCCCcEEeecCcC--CHHHH----HHHHHcCcceeeeccccccCc
Q 020013 130 GVDAIIVQGREAGGHVIGQDGLISLLPMVVDLIGDRDIPIIAAGGIV--DARGY----VAALSLGAQGICLGTRFVASE 202 (332)
Q Consensus 130 g~D~ivv~G~eaGGh~~~~~~~~~ll~~i~~~~~~~~iPviaaGGI~--~~~~v----~~al~~GA~gV~~GT~fl~t~ 202 (332)
|+|.|.+.=+ +. ..-..++.+.. ..+||+..||=. +.+++ ..++..||.|+.+|..++..+
T Consensus 170 GaDivK~~~p-------~~---~~~~~~~v~~a--~~~pv~~~gG~~~~~~~~~l~~~~~a~~~Ga~G~~~GRni~q~~ 236 (251)
T d1ojxa_ 170 GADAMKIKYT-------GD---PKTFSWAVKVA--GKVPVLMSGGPKTKTEEDFLKQVEGVLEAGALGIAVGRNVWQRR 236 (251)
T ss_dssp TCSEEEECCC-------SS---HHHHHHHHHHT--TTSCEEEECCSCCSSHHHHHHHHHHHHHTTCCEEEESHHHHTST
T ss_pred CCCEEEecCC-------Cc---HHHHHHHHHhc--CCCceEEeCCCCCCCHHHHHHHHHHHHHCCCcEEeechhhhCcC
Confidence 9999998432 11 22233333332 158888887754 44443 566788999999999988654
|
| >d1twda_ c.1.30.1 (A:) Copper homeostasis protein CutC {Shigella flexneri [TaxId: 623]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: CutC-like family: CutC-like domain: Copper homeostasis protein CutC species: Shigella flexneri [TaxId: 623]
Probab=96.50 E-value=0.024 Score=47.72 Aligned_cols=160 Identities=11% Similarity=0.100 Sum_probs=93.4
Q ss_pred CcHHHHHHHHhCCCce-----eecCCCCCCHHHHHHHHHHHHhhcCCcEEEEeecCCC-----C--------HHHHHHHH
Q 020013 23 SGPELVAAVANAGGLG-----LLRAPDWEAPDYLRDLIRKTRSLTERPFGVGVVLAFP-----H--------NENIKAIL 84 (332)
Q Consensus 23 s~~~la~avs~aGglG-----~i~~~~~~~~e~~~~~i~~~r~~~~~p~gvnl~~~~~-----~--------~~~~~~~~ 84 (332)
.+++-+.+..++|.=- -+..++ .||. ...++.+++..+.|+- +++.+- + .+.++.+.
T Consensus 8 ~s~~~a~~A~~~GAdRIELc~~l~~GG-lTPS--~g~i~~~~~~~~iPv~--vMIRPR~GdF~Ys~~E~~~M~~di~~~k 82 (247)
T d1twda_ 8 YSMECALTAQQNGADRVELCAAPKEGG-LTPS--LGVLKSVRQRVTIPVH--PIIRPRGGDFCYSDGEFAAILEDVRTVR 82 (247)
T ss_dssp SSHHHHHHHHHTTCSEEEECBCGGGTC-BCCC--HHHHHHHHHHCCSCEE--EBCCSSSSCSCCCHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHcCCCEEEEcCCcccCC-CCCC--HHHHHHHHHhcCCCeE--EEEecCCCCCCCCHHHHHHHHHHHHHHH
Confidence 4667777776776422 122222 3553 2345666665666644 344321 0 23466788
Q ss_pred hcCCcEEEEcc----CCCcHHHHHHHHh--CCCEEE-Ee----cCCHHHH-HHHHHcCCCEEEEecCCCCcccCCCCchh
Q 020013 85 SEKVAVLQVSW----GEYSEELVLEAHS--AGVKVV-PQ----VGSFDEA-RKAVNAGVDAIIVQGREAGGHVIGQDGLI 152 (332)
Q Consensus 85 ~~~~~~I~~~~----g~~~~~~i~~~~~--~g~~v~-~~----v~s~~~a-~~a~~~g~D~ivv~G~eaGGh~~~~~~~~ 152 (332)
+.|++.|.+++ |.-..+.++++.+ .+.++. +. +.++.++ ..+.+.|+|-|+-.|. .. ....-.
T Consensus 83 ~~G~dGvV~G~L~~dg~iD~~~~~~L~~~a~~l~vTFHRAfD~~~d~~~al~~Li~lG~~rILTSGg----~~-~a~~G~ 157 (247)
T d1twda_ 83 ELGFPGLVTGVLDVDGNVDMPRMEKIMAAAGPLAVTFHRAFDMCANPLYTLNNLAELGIARVLTSGQ----KS-DALQGL 157 (247)
T ss_dssp HTTCSEEEECCBCTTSSBCHHHHHHHHHHHTTSEEEECGGGGGCSCHHHHHHHHHHHTCCEEEECTT----SS-STTTTH
T ss_pred HcCCCeEEEEEECCCCCccHHHHHHHHHHhcccCeeeehhhhhhCCHHHHHHHHHhcCCCeEeccCC----CC-chhHHH
Confidence 89999999864 2222344554433 366654 32 3455444 4566889999998653 22 122235
Q ss_pred hhHHHHHHHhCCCCCcEEeecCcCCHHHHHHHHHcCcceeeec
Q 020013 153 SLLPMVVDLIGDRDIPIIAAGGIVDARGYVAALSLGAQGICLG 195 (332)
Q Consensus 153 ~ll~~i~~~~~~~~iPviaaGGI~~~~~v~~al~~GA~gV~~G 195 (332)
..|.++.+... +.-|++.||| +.+|+...+..|+..+=.+
T Consensus 158 ~~L~~L~~~a~--~~iIm~GgGI-~~~Ni~~l~~~g~~e~H~s 197 (247)
T d1twda_ 158 SKIMELIAHRD--APIIMAGAGV-RAENLHHFLDAGVLEVHSS 197 (247)
T ss_dssp HHHHHHHTSSS--CCEEEEESSC-CTTTHHHHHHHTCSEEEEC
T ss_pred HHHHHHHHhcC--CcEEEecCCC-CHHHHHHHHHcCCCEEEEC
Confidence 56666665432 3338899999 8899999988887766543
|
| >d1vhca_ c.1.10.1 (A:) Hypothetical protein HI0047 {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Aldolase family: Class I aldolase domain: Hypothetical protein HI0047 species: Haemophilus influenzae [TaxId: 727]
Probab=96.49 E-value=0.026 Score=46.48 Aligned_cols=118 Identities=14% Similarity=0.221 Sum_probs=81.5
Q ss_pred HHHHHHHhcCCcEEEEccCCC-cHHHHHHHHhC--CCEEE-EecCCHHHHHHHHHcCCCEEEEecCCCCcccCCCCchhh
Q 020013 78 ENIKAILSEKVAVLQVSWGEY-SEELVLEAHSA--GVKVV-PQVGSFDEARKAVNAGVDAIIVQGREAGGHVIGQDGLIS 153 (332)
Q Consensus 78 ~~~~~~~~~~~~~I~~~~g~~-~~~~i~~~~~~--g~~v~-~~v~s~~~a~~a~~~g~D~ivv~G~eaGGh~~~~~~~~~ 153 (332)
+..+.+.+.|+++|.+.+-.+ ..+.++.+++. ++.+. .+|.+.++++.+.++|+++++--+ ....
T Consensus 30 ~~~~al~~~Gi~~iEitl~~~~a~~~I~~l~~~~p~~~vGaGTV~~~~~~~~a~~aGa~FivSP~-----------~~~~ 98 (212)
T d1vhca_ 30 PLADTLAKNGLSVAEITFRSEAAADAIRLLRANRPDFLIAAGTVLTAEQVVLAKSSGADFVVTPG-----------LNPK 98 (212)
T ss_dssp HHHHHHHHTTCCEEEEETTSTTHHHHHHHHHHHCTTCEEEEESCCSHHHHHHHHHHTCSEEECSS-----------CCHH
T ss_pred HHHHHHHHCCCCEEEEeCCChhHHHHHHHHHhcCCCceEeeeecccHHHHHHHHhhCCcEEECCC-----------CCHH
Confidence 345777889999999986542 23567777543 45554 468899999999999999998522 1233
Q ss_pred hHHHHHHHhCCCCCcEEeecCcCCHHHHHHHHHcCcceeeeccccccCccCCCCHHHHHHHhcC
Q 020013 154 LLPMVVDLIGDRDIPIIAAGGIVDARGYVAALSLGAQGICLGTRFVASEESYAHPEYKRKLVEM 217 (332)
Q Consensus 154 ll~~i~~~~~~~~iPviaaGGI~~~~~v~~al~~GA~gV~~GT~fl~t~Es~~~~~~k~~~~~~ 217 (332)
++....+. ++|++- |+.|+..+..++.+|++.|-+ +.-+......|-+.+...
T Consensus 99 v~~~a~~~----~i~~iP--Gv~TpsEi~~A~~~G~~~vK~-----FPA~~~gG~~~lkal~~p 151 (212)
T d1vhca_ 99 IVKLCQDL----NFPITP--GVNNPMAIEIALEMGISAVKF-----FPAEASGGVKMIKALLGP 151 (212)
T ss_dssp HHHHHHHT----TCCEEC--EECSHHHHHHHHHTTCCEEEE-----TTTTTTTHHHHHHHHHTT
T ss_pred HHHHHHhc----CCCccC--CcCCHHHHHHHHHCCCCEEEE-----ccccccchHHHHHHHhcc
Confidence 44443332 678764 788999999999999998875 332333346676666653
|
| >d1wbha1 c.1.10.1 (A:1-213) KDPG aldolase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Aldolase family: Class I aldolase domain: KDPG aldolase species: Escherichia coli [TaxId: 562]
Probab=96.47 E-value=0.023 Score=46.90 Aligned_cols=118 Identities=18% Similarity=0.177 Sum_probs=82.8
Q ss_pred HHHHHHHhcCCcEEEEccCCC-cHHHHHHHHhC--CCEEE-EecCCHHHHHHHHHcCCCEEEEecCCCCcccCCCCchhh
Q 020013 78 ENIKAILSEKVAVLQVSWGEY-SEELVLEAHSA--GVKVV-PQVGSFDEARKAVNAGVDAIIVQGREAGGHVIGQDGLIS 153 (332)
Q Consensus 78 ~~~~~~~~~~~~~I~~~~g~~-~~~~i~~~~~~--g~~v~-~~v~s~~~a~~a~~~g~D~ivv~G~eaGGh~~~~~~~~~ 153 (332)
+..+.+.+.|++.|.+.+-.+ ..+.++.+++. ++.+. .+|.+.++++.+.++|+++++--|. ...
T Consensus 31 ~~~~al~~~Gi~~iEitl~tp~a~~~I~~l~~~~p~~~vGaGTV~~~~~~~~a~~aGa~FivSP~~-----------~~~ 99 (213)
T d1wbha1 31 PMAKALVAGGVRVLNVTLRTECAVDAIRAIAKEVPEAIVGAGTVLNPQQLAEVTEAGAQFAISPGL-----------TEP 99 (213)
T ss_dssp HHHHHHHHTTCCEEEEESCSTTHHHHHHHHHHHCTTSEEEEESCCSHHHHHHHHHHTCSCEEESSC-----------CHH
T ss_pred HHHHHHHHCCCCEEEEeCCChhHHHHHHHHHHHCCCCeeeccccccHHHHHHHHHCCCcEEECCCC-----------CHH
Confidence 456778889999999986543 33666676653 45544 5688999999999999999987322 133
Q ss_pred hHHHHHHHhCCCCCcEEeecCcCCHHHHHHHHHcCcceeeeccccccCccCCCCHHHHHHHhcC
Q 020013 154 LLPMVVDLIGDRDIPIIAAGGIVDARGYVAALSLGAQGICLGTRFVASEESYAHPEYKRKLVEM 217 (332)
Q Consensus 154 ll~~i~~~~~~~~iPviaaGGI~~~~~v~~al~~GA~gV~~GT~fl~t~Es~~~~~~k~~~~~~ 217 (332)
++....+. ++|++- |+.|+..+..++.+|++.|-+ +.-+...+..|-+.+...
T Consensus 100 v~~~a~~~----~i~~iP--Gv~TpsEi~~A~~~G~~~vKl-----FPA~~~Gg~~~lkal~~p 152 (213)
T d1wbha1 100 LLKAATEG----TIPLIP--GISTVSELMLGMDYGLKEFKF-----FPAEANGGVKALQAIAGP 152 (213)
T ss_dssp HHHHHHHS----SSCEEE--EESSHHHHHHHHHTTCCEEEE-----TTTTTTTHHHHHHHHHTT
T ss_pred HHHHHHhc----CCCccC--CcCCHHHHHHHHHCCCCEEEe-----ccchhcChHHHHHHhcCc
Confidence 44443332 688765 677999999999999998875 333444456777777653
|
| >d1wa3a1 c.1.10.1 (A:2-203) KDPG aldolase {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Aldolase family: Class I aldolase domain: KDPG aldolase species: Thermotoga maritima [TaxId: 2336]
Probab=96.37 E-value=0.031 Score=45.72 Aligned_cols=100 Identities=19% Similarity=0.283 Sum_probs=71.4
Q ss_pred HHHHHHHhcCCcEEEEccCCC-cHHHHHHHH---hCCCEEE-EecCCHHHHHHHHHcCCCEEEEecCCCCcccCCCCchh
Q 020013 78 ENIKAILSEKVAVLQVSWGEY-SEELVLEAH---SAGVKVV-PQVGSFDEARKAVNAGVDAIIVQGREAGGHVIGQDGLI 152 (332)
Q Consensus 78 ~~~~~~~~~~~~~I~~~~g~~-~~~~i~~~~---~~g~~v~-~~v~s~~~a~~a~~~g~D~ivv~G~eaGGh~~~~~~~~ 152 (332)
...+.+.+.|++++++.+-.+ ..+.++.++ ..++.+. .+|.+.++++.+.++|+++++--| ...
T Consensus 25 ~~~~al~~~Gi~~iEitlr~p~a~~~i~~l~~~~~~~~~vGaGTV~~~~~~~~a~~aGa~fivsP~-----------~~~ 93 (202)
T d1wa3a1 25 EKALAVFEGGVHLIEITFTVPDADTVIKELSFLKEKGAIIGAGTVTSVEQCRKAVESGAEFIVSPH-----------LDE 93 (202)
T ss_dssp HHHHHHHHTTCCEEEEETTSTTHHHHHHHTHHHHHTTCEEEEESCCSHHHHHHHHHHTCSEEECSS-----------CCH
T ss_pred HHHHHHHHcCCCEEEEecCCccHHHHHHHHHHhcCCCcEEEecccccHHHHHHHHhhcccEEeCCC-----------CcH
Confidence 345677889999999886543 224555543 2467665 578899999999999999997421 113
Q ss_pred hhHHHHHHHhCCCCCcEEeecCcCCHHHHHHHHHcCcceeee
Q 020013 153 SLLPMVVDLIGDRDIPIIAAGGIVDARGYVAALSLGAQGICL 194 (332)
Q Consensus 153 ~ll~~i~~~~~~~~iPviaaGGI~~~~~v~~al~~GA~gV~~ 194 (332)
.++....+. ++|++ =|+.|+..+..++.+|++.+-+
T Consensus 94 ~v~~~~~~~----~i~~i--PGv~TpsEi~~A~~~G~~~lK~ 129 (202)
T d1wa3a1 94 EISQFCKEK----GVFYM--PGVMTPTELVKAMKLGHTILKL 129 (202)
T ss_dssp HHHHHHHHH----TCEEE--CEECSHHHHHHHHHTTCCEEEE
T ss_pred HHHHHHHhc----CCcee--CCcCcHHHHHHHHHCCCCEEEe
Confidence 444444432 57765 4777999999999999999876
|
| >d1mxsa_ c.1.10.1 (A:) KDPG aldolase {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Aldolase family: Class I aldolase domain: KDPG aldolase species: Pseudomonas putida [TaxId: 303]
Probab=96.36 E-value=0.028 Score=46.45 Aligned_cols=118 Identities=16% Similarity=0.128 Sum_probs=81.1
Q ss_pred HHHHHHHHhcCCcEEEEccCCC-cHHHHHHHHhC--CCEEE-EecCCHHHHHHHHHcCCCEEEEecCCCCcccCCCCchh
Q 020013 77 NENIKAILSEKVAVLQVSWGEY-SEELVLEAHSA--GVKVV-PQVGSFDEARKAVNAGVDAIIVQGREAGGHVIGQDGLI 152 (332)
Q Consensus 77 ~~~~~~~~~~~~~~I~~~~g~~-~~~~i~~~~~~--g~~v~-~~v~s~~~a~~a~~~g~D~ivv~G~eaGGh~~~~~~~~ 152 (332)
.+..+.+.+.|++++.+.+..+ ..+.++.+++. ++.+. .+|.+.++++.+.++|+++++.-| ...
T Consensus 32 ~~~~~al~~~Gi~~iEitl~~p~a~~~i~~l~~~~p~~~vGaGTV~~~~~~~~a~~aGa~FivsP~-----------~~~ 100 (216)
T d1mxsa_ 32 LPLADALAAGGIRTLEVTLRSQHGLKAIQVLREQRPELCVGAGTVLDRSMFAAVEAAGAQFVVTPG-----------ITE 100 (216)
T ss_dssp HHHHHHHHHTTCCEEEEESSSTHHHHHHHHHHHHCTTSEEEEECCCSHHHHHHHHHHTCSSEECSS-----------CCH
T ss_pred HHHHHHHHHCCCCEEEEeCCChhHHHHHHHHHHhCCCcceeeeeeecHHHHHHHHhCCCCEEECCC-----------CcH
Confidence 3456778889999999987542 22556666553 55554 568899999999999999997622 123
Q ss_pred hhHHHHHHHhCCCCCcEEeecCcCCHHHHHHHHHcCcceeeeccccccCccCCCCHHHHHHHhc
Q 020013 153 SLLPMVVDLIGDRDIPIIAAGGIVDARGYVAALSLGAQGICLGTRFVASEESYAHPEYKRKLVE 216 (332)
Q Consensus 153 ~ll~~i~~~~~~~~iPviaaGGI~~~~~v~~al~~GA~gV~~GT~fl~t~Es~~~~~~k~~~~~ 216 (332)
+++....+ .++|++- |+.|+..+..++.+|++.|-+ +.-+......|-+.+..
T Consensus 101 ~v~~~a~~----~~i~~iP--Gv~TpsEi~~A~~~G~~~vKl-----FPA~~~~g~~~ikal~~ 153 (216)
T d1mxsa_ 101 DILEAGVD----SEIPLLP--GISTPSEIMMGYALGYRRFKL-----FPAEISGGVAAIKAFGG 153 (216)
T ss_dssp HHHHHHHH----CSSCEEC--EECSHHHHHHHHTTTCCEEEE-----TTHHHHTHHHHHHHHHT
T ss_pred HHHHHHHh----cCCCccC--CcCCHHHHHHHHHCCCCEEEe-----ccccccccHHHHHHHhc
Confidence 44444333 2688765 677999999999999998875 22232234566666665
|
| >d1zfja1 c.1.5.1 (A:2-94,A:221-492) Inosine monophosphate dehydrogenase (IMPDH) {Streptococcus pyogenes [TaxId: 1314]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Inosine monophosphate dehydrogenase (IMPDH) family: Inosine monophosphate dehydrogenase (IMPDH) domain: Inosine monophosphate dehydrogenase (IMPDH) species: Streptococcus pyogenes [TaxId: 1314]
Probab=96.31 E-value=0.004 Score=56.02 Aligned_cols=69 Identities=28% Similarity=0.457 Sum_probs=52.3
Q ss_pred HHHHHHHHHcCCCEEEEecCCCCcccCCCCchhhhHHHHHHHhCCCCCcEEeecCcCCHHHHHHHHHcCcceeeecc
Q 020013 120 FDEARKAVNAGVDAIIVQGREAGGHVIGQDGLISLLPMVVDLIGDRDIPIIAAGGIVDARGYVAALSLGAQGICLGT 196 (332)
Q Consensus 120 ~~~a~~a~~~g~D~ivv~G~eaGGh~~~~~~~~~ll~~i~~~~~~~~iPviaaGGI~~~~~v~~al~~GA~gV~~GT 196 (332)
.+.+..+.++|+|.|+++-. -||. ......+..+++..+ ++||| +|.|.|++.+..++.+|||+|-+|-
T Consensus 109 ~er~~~l~~agvd~ivID~A--~G~s---~~~~~~i~~ik~~~~--~~~iI-aGNV~T~e~a~~L~~aGaD~VkVGi 177 (365)
T d1zfja1 109 FERAEALFEAGADAIVIDTA--HGHS---AGVLRKIAEIRAHFP--NRTLI-AGNIATAEGARALYDAGVDVVKVGI 177 (365)
T ss_dssp HHHHHHHHHHTCSEEEECCS--CTTC---HHHHHHHHHHHHHCS--SSCEE-EEEECSHHHHHHHHHTTCSEEEECS
T ss_pred HHHHHHHHHcCCCEEEEECC--cccc---cchhHHHHHHHhhCC--Cccee-ecccccHHHHHHHHhcCCceEEeee
Confidence 45566778899999999632 3443 234556777776653 67776 7999999999999999999988873
|
| >d1rvga_ c.1.10.2 (A:) Fructose-bisphosphate aldolase (FBP aldolase) {Thermus aquaticus [TaxId: 271]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Aldolase family: Class II FBP aldolase domain: Fructose-bisphosphate aldolase (FBP aldolase) species: Thermus aquaticus [TaxId: 271]
Probab=96.23 E-value=0.22 Score=42.97 Aligned_cols=134 Identities=22% Similarity=0.236 Sum_probs=87.0
Q ss_pred hcCCcEEEEeecCCCCHHHHHHHHhcCCcEEEEccCCCc--------HHHHHHHHhCCCEEEE-----------------
Q 020013 61 LTERPFGVGVVLAFPHNENIKAILSEKVAVLQVSWGEYS--------EELVLEAHSAGVKVVP----------------- 115 (332)
Q Consensus 61 ~~~~p~gvnl~~~~~~~~~~~~~~~~~~~~I~~~~g~~~--------~~~i~~~~~~g~~v~~----------------- 115 (332)
..+.|+.+++=-.. +.+.+..+++.|.+.|-+.....| .++++..+..|+.|=.
T Consensus 70 ~~~vpv~lHlDH~~-~~e~i~~ai~~GftSVMiDgS~l~~eeNi~~Tk~vv~~Ah~~gv~VEaElG~igg~Ed~~~~~~~ 148 (305)
T d1rvga_ 70 EARVPVAVHLDHGS-SYESVLRALRAGFTSVMIDKSHEDFETNVRETRRVVEAAHAVGVTVEAELGRLAGIEEHVAVDEK 148 (305)
T ss_dssp HCSSCEEEEEEEEC-SHHHHHHHHHTTCSEEEECCTTSCHHHHHHHHHHHHHHHHHTTCEEEEEESCCCCSCC------C
T ss_pred ccCCcEEEeehhcc-ChhhhHHHHhcCCceEEEcCccccHHHHHHHHHHHHHHhchhceeEEeeeeeeeccccccccccc
Confidence 34566666653222 256777888888888877633322 2455666767765521
Q ss_pred --ecCCHHHHHHHH-HcCCCEEEE-ecCCCCcccCC--CCchhhhHHHHHHHhCCCCCcEEeec----------------
Q 020013 116 --QVGSFDEARKAV-NAGVDAIIV-QGREAGGHVIG--QDGLISLLPMVVDLIGDRDIPIIAAG---------------- 173 (332)
Q Consensus 116 --~v~s~~~a~~a~-~~g~D~ivv-~G~eaGGh~~~--~~~~~~ll~~i~~~~~~~~iPviaaG---------------- 173 (332)
..+++++|+... +.|+|.+-+ .|.-=|-..+. +.-.+.++.++.+.+ ++|++.-|
T Consensus 149 ~~~~T~peea~~Fv~~TgvD~LAvaiGn~HG~Yk~~~~~~l~~~~l~~I~~~~---~~PLVlHGgS~vp~~~~~~~~~~g 225 (305)
T d1rvga_ 149 DALLTNPEEARIFMERTGADYLAVAIGTSHGAYKGKGRPFIDHARLERIARLV---PAPLVLHGASAVPPELVERFRASG 225 (305)
T ss_dssp CTTCCCHHHHHHHHHHHCCSEEEECSSCCSSSBCSSSSCCCCHHHHHHHHHHC---CSCEEECSCCCCCHHHHHHHHHTT
T ss_pred ccccCCHHHHHHHHHHhCccHhhhhhhhhhcccCCCCcccchHHHHHHHHhcc---CCCeeccCCccccHHHHhhhcccC
Confidence 135789998855 579999977 23311111111 123578899999887 79999888
Q ss_pred -------CcCCHHHHHHHHHcCcceeeeccccc
Q 020013 174 -------GIVDARGYVAALSLGAQGICLGTRFV 199 (332)
Q Consensus 174 -------GI~~~~~v~~al~~GA~gV~~GT~fl 199 (332)
|+ ..+++.+++..|..-|-++|.+.
T Consensus 226 ~~lhg~sG~-~~e~i~~ai~~GV~KiNi~T~l~ 257 (305)
T d1rvga_ 226 GEIGEAAGI-HPEDIKKAISLGIAKINTDTDLR 257 (305)
T ss_dssp CCCCSCBCC-CHHHHHHHHHTTEEEEEECHHHH
T ss_pred cccCCCCCC-CHHHHHHHHHcCeEEEEeChHHH
Confidence 56 56888888888888888888654
|
| >d1mzha_ c.1.10.1 (A:) Deoxyribose-phosphate aldolase DeoC {Aquifex aeolicus [TaxId: 63363]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Aldolase family: Class I aldolase domain: Deoxyribose-phosphate aldolase DeoC species: Aquifex aeolicus [TaxId: 63363]
Probab=96.22 E-value=0.0083 Score=50.10 Aligned_cols=110 Identities=20% Similarity=0.296 Sum_probs=67.3
Q ss_pred HHHHHhcCCcEEEEcc-------CCCcHHHHH---HHHh-C-C--CEEEEecC--CHHHHH----HHHHcCCCEEEE-ec
Q 020013 80 IKAILSEKVAVLQVSW-------GEYSEELVL---EAHS-A-G--VKVVPQVG--SFDEAR----KAVNAGVDAIIV-QG 138 (332)
Q Consensus 80 ~~~~~~~~~~~I~~~~-------g~~~~~~i~---~~~~-~-g--~~v~~~v~--s~~~a~----~a~~~g~D~ivv-~G 138 (332)
.+.+++.|++-|.+-. |. ...+.+ .+.+ . + .||+.... +.++.. .+.++|+|+|.. .|
T Consensus 76 ~~~Ai~~GAdEID~Vin~~~l~~g~-~~~v~~ei~~v~~~~~~~~lKVIlEt~~L~~~ei~~a~~~a~~aGadfiKTSTG 154 (225)
T d1mzha_ 76 AVEAVRDGAQELDIVWNLSAFKSEK-YDFVVEELKEIFRETPSAVHKVIVETPYLNEEEIKKAVEICIEAGADFIKTSTG 154 (225)
T ss_dssp HHHHHHTTCSEEEEECCHHHHHTTC-HHHHHHHHHHHHHTCTTSEEEEECCGGGCCHHHHHHHHHHHHHHTCSEEECCCS
T ss_pred HHHHHHcCCCeEEEeechhhhhccc-HHHHHHHHHHHHHhccCceeehhhhhccCCHHHHHHHHHHHHHcccceEeecCC
Confidence 4567788998876531 22 222222 2222 2 2 34554332 444443 467899999986 34
Q ss_pred CCCCcccCCCCchhhhHHHHHHHhCCCCCcEEeecCcCCHHHHHHHHHcCcceeeeccc
Q 020013 139 REAGGHVIGQDGLISLLPMVVDLIGDRDIPIIAAGGIVDARGYVAALSLGAQGICLGTR 197 (332)
Q Consensus 139 ~eaGGh~~~~~~~~~ll~~i~~~~~~~~iPviaaGGI~~~~~v~~al~~GA~gV~~GT~ 197 (332)
+..+| .+..-++.+++..++ ++.|=++|||.|.+++.+++.+||+-+-..+.
T Consensus 155 ~~~~g------at~e~v~~m~~~~~~-~~~iKasGGIrt~~~a~~~i~~Ga~RiGtSs~ 206 (225)
T d1mzha_ 155 FAPRG------TTLEEVRLIKSSAKG-RIKVKASGGIRDLETAISMIEAGADRIGTSSG 206 (225)
T ss_dssp CSSSC------CCHHHHHHHHHHHTT-SSEEEEESSCCSHHHHHHHHHTTCSEEEESCH
T ss_pred CCCCC------CCHHHHHHHHHHhCC-CceEECcCCCCCHHHHHHHHHhchhheecCcH
Confidence 32222 234455556666543 68999999999999999999999996544333
|
| >d1vrda1 c.1.5.1 (A:1-85,A:213-457) Inosine monophosphate dehydrogenase (IMPDH) {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Inosine monophosphate dehydrogenase (IMPDH) family: Inosine monophosphate dehydrogenase (IMPDH) domain: Inosine monophosphate dehydrogenase (IMPDH) species: Thermotoga maritima [TaxId: 2336]
Probab=96.06 E-value=0.032 Score=49.21 Aligned_cols=110 Identities=25% Similarity=0.348 Sum_probs=67.7
Q ss_pred HHHHHHHHhcCCcEEEEccCCCcHHHHH---HHHhCCCEEEEec----CCHHHHHHHHHcCCCEEEEecCCCCcccCCCC
Q 020013 77 NENIKAILSEKVAVLQVSWGEYSEELVL---EAHSAGVKVVPQV----GSFDEARKAVNAGVDAIIVQGREAGGHVIGQD 149 (332)
Q Consensus 77 ~~~~~~~~~~~~~~I~~~~g~~~~~~i~---~~~~~g~~v~~~v----~s~~~a~~a~~~g~D~ivv~G~eaGGh~~~~~ 149 (332)
.+....+.+.|-=.+ +|-...+.+..+ .+++....+...+ .+.+.+..+.++|+|+++++.. -||. .
T Consensus 51 ~~mA~als~~GGlGv-i~r~~~~e~~~~~i~~vk~~~~~v~~~vgv~~~~~e~~~~li~agvd~ivId~A--~G~~---~ 124 (330)
T d1vrda1 51 AALAKALAREGGIGI-IHKNLTPDEQARQVSIVKKTRLLVGAAVGTSPETMERVEKLVKAGVDVIVIDTA--HGHS---R 124 (330)
T ss_dssp HHHHHHHHTTTCEEE-ECSSSCHHHHHHHHHHHHTCCBCCEEEECSSTTHHHHHHHHHHTTCSEEEECCS--CCSS---H
T ss_pred HHHHHHHHHCCCeEE-eecccchhhhHHHHHHHhhhccEEEEEEecCHHHHHHHHHHHHCCCCEEEEecC--CCCc---h
Confidence 444444555544333 232333454443 3444443343333 2456667788999999999632 3443 2
Q ss_pred chhhhHHHHHHHhCCCCCcEEeecCcCCHHHHHHHHHcCcceeeec
Q 020013 150 GLISLLPMVVDLIGDRDIPIIAAGGIVDARGYVAALSLGAQGICLG 195 (332)
Q Consensus 150 ~~~~ll~~i~~~~~~~~iPviaaGGI~~~~~v~~al~~GA~gV~~G 195 (332)
.....++.+++..+ ++||| +|.+.+++.+..++.+|||+|.+|
T Consensus 125 ~~~~~ik~ik~~~~--~~~vi-aGnV~t~~~a~~l~~~GaD~v~VG 167 (330)
T d1vrda1 125 RVIETLEMIKADYP--DLPVV-AGNVATPEGTEALIKAGADAVKVG 167 (330)
T ss_dssp HHHHHHHHHHHHCT--TSCEE-EEEECSHHHHHHHHHTTCSEEEEC
T ss_pred hHHHHHHHHHHhCC--CCCEE-eechhHHHHHHHHHHcCCCEEeec
Confidence 34556667766553 67765 588889999999999999999875
|
| >d1m3ua_ c.1.12.8 (A:) Ketopantoate hydroxymethyltransferase PanB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Phosphoenolpyruvate/pyruvate domain family: Ketopantoate hydroxymethyltransferase PanB domain: Ketopantoate hydroxymethyltransferase PanB species: Escherichia coli [TaxId: 562]
Probab=95.89 E-value=0.12 Score=43.74 Aligned_cols=138 Identities=15% Similarity=0.169 Sum_probs=88.6
Q ss_pred CCcHHHHHHHHhCCC--------ceeecCCC----CCCHHHHHHHHHHHHhhcCCcEEEEeecCCCC---H---HHHHHH
Q 020013 22 ISGPELVAAVANAGG--------LGLLRAPD----WEAPDYLRDLIRKTRSLTERPFGVGVVLAFPH---N---ENIKAI 83 (332)
Q Consensus 22 ~s~~~la~avs~aGg--------lG~i~~~~----~~~~e~~~~~i~~~r~~~~~p~gvnl~~~~~~---~---~~~~~~ 83 (332)
..+..+|..+.++|. +|....+. -.+.|.+....+.++......|-+-=+....+ + .....+
T Consensus 22 ayD~~~A~~~~~agvDiiLVGDSlgmv~~G~~~T~~vt~d~mi~H~~aV~rga~~~~vv~DmPf~sy~~~~~a~~~a~~l 101 (262)
T d1m3ua_ 22 AYDYSFAKLFADEGLNVMLVGDSLGMTVQGHDSTLPVTVADIAYHTAAVRRGAPNCLLLADLPFMAYATPEQAFENAATV 101 (262)
T ss_dssp CCSHHHHHHHHHHTCCEEEECTTHHHHTTCCSSSTTCCHHHHHHHHHHHHHHCTTSEEEEECCTTSSSSHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHCCCCEEEEcCcHHhcccCCCCcceechHhHHHHHHHHHhccccceeEeccccccchhhHHHHHHHHHH
Confidence 568888888877762 22222210 13556666666777665555554432221111 1 123455
Q ss_pred HhcCCcEEEEccCCCcHHHHHHHHhCCCEEEEecC-----------------CHHHH-------HHHHHcCCCEEEEecC
Q 020013 84 LSEKVAVLQVSWGEYSEELVLEAHSAGVKVVPQVG-----------------SFDEA-------RKAVNAGVDAIIVQGR 139 (332)
Q Consensus 84 ~~~~~~~I~~~~g~~~~~~i~~~~~~g~~v~~~v~-----------------s~~~a-------~~a~~~g~D~ivv~G~ 139 (332)
.+.|+|.|-+-.|....++++.+.+.||+|+..++ +.+++ +..+++||..|++++.
T Consensus 102 ~~~GAdaVKlEgg~~~~~~I~~L~~~gIPV~gHiGL~PQ~~~~~GG~r~qGkt~~ea~~l~~~a~~le~AGaf~ivlE~v 181 (262)
T d1m3ua_ 102 MRAGANMVKIEGGEWLVETVQMLTERAVPVCGHLGLTPQSVNIFGGYKVQGRGDEAGDQLLSDALALEAAGAQLLVLECV 181 (262)
T ss_dssp HHTTCSEEECCCSGGGHHHHHHHHHTTCCEEEEEESCGGGHHHHTSSCCCCCSHHHHHHHHHHHHHHHHHTCCEEEEESC
T ss_pred HhcCCcEEEeccchhHHHHHHHHHHcCCeEEeehhhchhhhhhcCCccccCccHHHHHHHHHHHHHHHhhcceEEEEecc
Confidence 67899999997565556899999999999986542 44444 5677899999999753
Q ss_pred CCCcccCCCCchhhhHHHHHHHhCCCCCcEEeec
Q 020013 140 EAGGHVIGQDGLISLLPMVVDLIGDRDIPIIAAG 173 (332)
Q Consensus 140 eaGGh~~~~~~~~~ll~~i~~~~~~~~iPviaaG 173 (332)
...+-.+|.+.+ ++|+|..|
T Consensus 182 -----------p~~va~~It~~~---~IPtIGIG 201 (262)
T d1m3ua_ 182 -----------PVELAKRITEAL---AIPVIGIG 201 (262)
T ss_dssp -----------CHHHHHHHHHHC---SSCEEEES
T ss_pred -----------cHHHHHHHHhhh---cceeEeec
Confidence 134567777777 89999544
|
| >d1n7ka_ c.1.10.1 (A:) Deoxyribose-phosphate aldolase DeoC {Archaeon Aeropyrum pernix [TaxId: 56636]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Aldolase family: Class I aldolase domain: Deoxyribose-phosphate aldolase DeoC species: Archaeon Aeropyrum pernix [TaxId: 56636]
Probab=95.83 E-value=0.025 Score=47.33 Aligned_cols=111 Identities=25% Similarity=0.265 Sum_probs=63.9
Q ss_pred HHHHHHhcCCcEEEEc--cCCCcH-------HHHHHHHhCC--CEEEEecC--CHHHHHH----HHHcCCCEEEE-ecCC
Q 020013 79 NIKAILSEKVAVLQVS--WGEYSE-------ELVLEAHSAG--VKVVPQVG--SFDEARK----AVNAGVDAIIV-QGRE 140 (332)
Q Consensus 79 ~~~~~~~~~~~~I~~~--~g~~~~-------~~i~~~~~~g--~~v~~~v~--s~~~a~~----a~~~g~D~ivv-~G~e 140 (332)
..+.+++.|++=|.+- .+.... +.++..+..| +||+.... +.++... +.++|+|+|.- .|+.
T Consensus 93 E~~~Ai~~GAdEID~Vin~~~~~~~~~~ev~~~~~~~~~~g~~lKVIlEt~~L~~~~i~~a~~~a~~aGadFVKTSTG~~ 172 (234)
T d1n7ka_ 93 EAQTVLEAGATELDVVPHLSLGPEAVYREVSGIVKLAKSYGAVVKVILEAPLWDDKTLSLLVDSSRRAGADIVKTSTGVY 172 (234)
T ss_dssp HHHHHHHHTCCEEEECCCGGGCHHHHHHHHHHHHHHHHHTTCEEEEECCGGGSCHHHHHHHHHHHHHTTCSEEESCCSSS
T ss_pred HHHHHHHcCCCeEEEEechhhhhhhhHHHHHHHHHHHhccCceEEEEEeccccchHHHHHHHHHHHHhhhhheeeccccc
Confidence 3556777898877653 222111 2233445555 45554432 5555443 56899999975 2332
Q ss_pred CCcccCCCCchhhhHHHHHHHhCCCCCcEEeecCcCCHHHHHHHHHcCcceeeeccc
Q 020013 141 AGGHVIGQDGLISLLPMVVDLIGDRDIPIIAAGGIVDARGYVAALSLGAQGICLGTR 197 (332)
Q Consensus 141 aGGh~~~~~~~~~ll~~i~~~~~~~~iPviaaGGI~~~~~v~~al~~GA~gV~~GT~ 197 (332)
..| +.......+.+.... .++.|=++|||.|.+++.+++.+||+- +||.
T Consensus 173 ~~g---at~~~~~~l~~~~~~---~~vgIKasGGIrt~~~a~~~i~aGa~r--IGtS 221 (234)
T d1n7ka_ 173 TKG---GDPVTVFRLASLAKP---LGMGVKASGGIRSGIDAVLAVGAGADI--IGTS 221 (234)
T ss_dssp CCC---CSHHHHHHHHHHHGG---GTCEEEEESSCCSHHHHHHHHHTTCSE--EEET
T ss_pred CCC---CCHHHHHHHHHHhcC---CCCcEEeeCCcCCHHHHHHHHHccCce--eecc
Confidence 111 111112222222221 268899999999999999999999995 4543
|
| >d1icpa_ c.1.4.1 (A:) 12-oxophytodienoate reductase (OPR, OYE homolog) {Tomato (Lycopersicon esculentum), OPR1 [TaxId: 4081]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: FMN-linked oxidoreductases family: FMN-linked oxidoreductases domain: 12-oxophytodienoate reductase (OPR, OYE homolog) species: Tomato (Lycopersicon esculentum), OPR1 [TaxId: 4081]
Probab=95.82 E-value=0.03 Score=50.08 Aligned_cols=47 Identities=23% Similarity=0.235 Sum_probs=39.0
Q ss_pred hhHHHHHHHhCCCCCcEEeecCcCCHHHHHHHHHcC-cceeeeccccccCcc
Q 020013 153 SLLPMVVDLIGDRDIPIIAAGGIVDARGYVAALSLG-AQGICLGTRFVASEE 203 (332)
Q Consensus 153 ~ll~~i~~~~~~~~iPviaaGGI~~~~~v~~al~~G-A~gV~~GT~fl~t~E 203 (332)
.....+++.+ +.|+++.||+ +++.+.++++-| ||.|.||..+++.++
T Consensus 282 ~~~~~i~~~~---~~~vi~~g~~-~~~~ae~~l~~g~aD~V~~gR~~iadPd 329 (364)
T d1icpa_ 282 ESLVPMRKAY---KGTFIVAGGY-DREDGNRALIEDRADLVAYGRLFISNPD 329 (364)
T ss_dssp CCSHHHHHHC---CSCEEEESSC-CHHHHHHHHHTTSCSEEEESHHHHHCTT
T ss_pred HHHHHHHHhc---CCCEEEECCC-CHHHHHHHHHcCCCceehhHHHHHHCcc
Confidence 3445666666 7899999998 899999999875 999999999998765
|
| >d1u0sy_ c.23.1.1 (Y:) CheY protein {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Flavodoxin-like superfamily: CheY-like family: CheY-related domain: CheY protein species: Thermotoga maritima [TaxId: 2336]
Probab=95.61 E-value=0.086 Score=38.78 Aligned_cols=82 Identities=15% Similarity=0.100 Sum_probs=62.3
Q ss_pred HHHHhCCCEEEEecCCHHHHHHHH-HcCCCEEEEecCCCCcccCCCCchhhhHHHHHHHhCCCCCcEEeecCcCCHHHHH
Q 020013 104 LEAHSAGVKVVPQVGSFDEARKAV-NAGVDAIIVQGREAGGHVIGQDGLISLLPMVVDLIGDRDIPIIAAGGIVDARGYV 182 (332)
Q Consensus 104 ~~~~~~g~~v~~~v~s~~~a~~a~-~~g~D~ivv~G~eaGGh~~~~~~~~~ll~~i~~~~~~~~iPviaaGGI~~~~~v~ 182 (332)
+.+++.|..+...+++.++|.... +..+|.|+++=.- .....+.+++++++..+ ++|||.-.|-.+.+...
T Consensus 19 ~~L~~~g~~v~~~a~~~~~al~~~~~~~~dliilD~~m------p~~~G~e~~~~ir~~~~--~~pvi~ls~~~~~~~~~ 90 (118)
T d1u0sy_ 19 DIITKAGYEVAGEATNGREAVEKYKELKPDIVTMDITM------PEMNGIDAIKEIMKIDP--NAKIIVCSAMGQQAMVI 90 (118)
T ss_dssp HHHHHTTCEEEEEESSHHHHHHHHHHHCCSEEEEECSC------GGGCHHHHHHHHHHHCT--TCCEEEEECTTCHHHHH
T ss_pred HHHHHcCCceEEEECCHHHHHHHHHhccCCEEEEecCC------CCCCHHHHHHHHHHhCC--CCcEEEEEccCCHHHHH
Confidence 445678999888888888877554 5689999985321 11234778888876543 69999988999999999
Q ss_pred HHHHcCcceee
Q 020013 183 AALSLGAQGIC 193 (332)
Q Consensus 183 ~al~~GA~gV~ 193 (332)
+++.+||++..
T Consensus 91 ~a~~~Ga~~yl 101 (118)
T d1u0sy_ 91 EAIKAGAKDFI 101 (118)
T ss_dssp HHHHTTCCEEE
T ss_pred HHHHcCCCEEE
Confidence 99999999864
|
| >d1o66a_ c.1.12.8 (A:) Ketopantoate hydroxymethyltransferase PanB {Neisseria meningitidis [TaxId: 487]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Phosphoenolpyruvate/pyruvate domain family: Ketopantoate hydroxymethyltransferase PanB domain: Ketopantoate hydroxymethyltransferase PanB species: Neisseria meningitidis [TaxId: 487]
Probab=95.55 E-value=0.4 Score=40.26 Aligned_cols=137 Identities=14% Similarity=0.198 Sum_probs=88.4
Q ss_pred CCcHHHHHHHHhCCCceee---------cCC----CCCCHHHHHHHHHHHHhhcCCcEEE-EeecCC---CCHH---HHH
Q 020013 22 ISGPELVAAVANAGGLGLL---------RAP----DWEAPDYLRDLIRKTRSLTERPFGV-GVVLAF---PHNE---NIK 81 (332)
Q Consensus 22 ~s~~~la~avs~aGglG~i---------~~~----~~~~~e~~~~~i~~~r~~~~~p~gv-nl~~~~---~~~~---~~~ 81 (332)
..+..+|.++.++| +.+| ..+ ...+.|++....+.++.....+|-+ ++.... ..++ ...
T Consensus 22 ayd~~~A~~ae~ag-iDiilVGDSlgm~~~G~~~T~~vt~d~mi~h~~aV~rga~~~~~i~dmPf~sy~~~~~~~~~a~~ 100 (260)
T d1o66a_ 22 AYESSFAALMDDAG-VEMLLVGDSLGMAVQGRKSTLPVSLRDMCYHTECVARGAKNAMIVSDLPFGAYQQSKEQAFAAAA 100 (260)
T ss_dssp CCSHHHHHHHHHTT-CCEEEECTTHHHHTTCCSSSTTCCHHHHHHHHHHHHHHCSSSEEEEECCTTSSSSCHHHHHHHHH
T ss_pred CCCHHHHHHHHHcC-CCEEEEcCCchheecCCCCccccchhhhhhhhHHHHccCcceeeecchhhhhhcchhHHHHHHHH
Confidence 56888998888877 2222 221 0135666666666676655555544 332211 1122 233
Q ss_pred HHHhcCCcEEEEccCCCcHHHHHHHHhCCCEEEEecC-----------------C------HHHHHHHHHcCCCEEEEec
Q 020013 82 AILSEKVAVLQVSWGEYSEELVLEAHSAGVKVVPQVG-----------------S------FDEARKAVNAGVDAIIVQG 138 (332)
Q Consensus 82 ~~~~~~~~~I~~~~g~~~~~~i~~~~~~g~~v~~~v~-----------------s------~~~a~~a~~~g~D~ivv~G 138 (332)
.+.+.++|.|-+-.+....++++.+.+.|++|+..++ + .++++..+++||.+|+++.
T Consensus 101 ~~~~~gadavk~eg~~~~~~~i~~l~~~gIPV~gHiGl~Pq~~~~~gG~r~~Gk~~e~~~l~~~a~~le~AGa~~ivlE~ 180 (260)
T d1o66a_ 101 ELMAAGAHMVKLEGGVWMAETTEFLQMRGIPVCAHIGLTPQSVFAFGGYKVQGRGGKAQALLNDAKAHDDAGAAVVLMEC 180 (260)
T ss_dssp HHHHTTCSEEEEECSGGGHHHHHHHHHTTCCEEEEEESCGGGTTC-----------CHHHHHHHHHHHHHTTCSEEEEES
T ss_pred HHHHhhhhhccccchhhhhHHHHHHHHcCCeeEeecccccchheecCcceeccccchhHHHHHHHHHHHHhhhhehhhhh
Confidence 4567899999998665567899999999999986542 1 2355667889999999964
Q ss_pred CCCCcccCCCCchhhhHHHHHHHhCCCCCcEEeec
Q 020013 139 REAGGHVIGQDGLISLLPMVVDLIGDRDIPIIAAG 173 (332)
Q Consensus 139 ~eaGGh~~~~~~~~~ll~~i~~~~~~~~iPviaaG 173 (332)
. +..+-..|.+.+ ++|+|..|
T Consensus 181 V-----------p~~va~~It~~~---~iptIgIG 201 (260)
T d1o66a_ 181 V-----------LAELAKKVTETV---SCPTIGIG 201 (260)
T ss_dssp C-----------CHHHHHHHHHHC---SSCEEEES
T ss_pred c-----------cHHHHHHHHhhh---cceeeecc
Confidence 3 135667788877 89999554
|
| >d1vpxa_ c.1.10.1 (A:) Decameric fructose-6-phosphate aldolase/transaldolase {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Aldolase family: Class I aldolase domain: Decameric fructose-6-phosphate aldolase/transaldolase species: Thermotoga maritima [TaxId: 2336]
Probab=95.50 E-value=0.2 Score=41.10 Aligned_cols=135 Identities=19% Similarity=0.180 Sum_probs=84.9
Q ss_pred HHHHHHHhhcCCcEEEEeecCCCCHHHHHH---HHhcCCcEE-EEccCCCcHHHHHHHHhCCCEEEEe-cCCHHHHHHHH
Q 020013 53 DLIRKTRSLTERPFGVGVVLAFPHNENIKA---ILSEKVAVL-QVSWGEYSEELVLEAHSAGVKVVPQ-VGSFDEARKAV 127 (332)
Q Consensus 53 ~~i~~~r~~~~~p~gvnl~~~~~~~~~~~~---~~~~~~~~I-~~~~g~~~~~~i~~~~~~g~~v~~~-v~s~~~a~~a~ 127 (332)
+.++.+......|+.+.++.... ++.++. +...+..++ -+..-..-.+.++.+++.|+++-.+ |.|.+++..|.
T Consensus 43 ~~~~~i~~~~~~~is~ev~~~~~-~~m~~~a~~l~~~~~ni~VKIP~t~~G~~ai~~L~~~Gi~~n~Tavfs~~Qa~~Aa 121 (218)
T d1vpxa_ 43 QRVKEICDLVKGPVSAEVVSLDY-EGMVREARELAQISEYVVIKIPMTPDGIKAVKTLSAEGIKTNVTLVFSPAQAILAA 121 (218)
T ss_dssp CHHHHHHHHHCSCEEEECSCCSH-HHHHHHHHHHHTTCTTEEEEEESSHHHHHHHHHHHHTTCCEEEEEECSHHHHHHHH
T ss_pred HHHHHHHhccCCcchhhhccCcH-HHHHHHHHHHhccccceEEEecccccchHHHHHHHHcCCceeeEEecCHHHHHHHH
Confidence 33455555567788888765432 333333 333445543 3442111125678888999998765 67999999999
Q ss_pred HcCCCEEEEe-cC--CCCcccCCCCchhhhHHHHHHHhC--CCCCcEEeecCcCCHHHHHHHHHcCcceeeec
Q 020013 128 NAGVDAIIVQ-GR--EAGGHVIGQDGLISLLPMVVDLIG--DRDIPIIAAGGIVDARGYVAALSLGAQGICLG 195 (332)
Q Consensus 128 ~~g~D~ivv~-G~--eaGGh~~~~~~~~~ll~~i~~~~~--~~~iPviaaGGI~~~~~v~~al~~GA~gV~~G 195 (332)
++|+++|-.. |+ +.|+ ..+.++.++.+.+. +.+..|++ +.+.+.+++.+++.+|+|.+-+.
T Consensus 122 ~aga~yispy~gR~~d~g~------d~~~~i~~~~~~~~~~~~~tkil~-AS~r~~~~v~~a~~~G~d~iTip 187 (218)
T d1vpxa_ 122 KAGATYVSPFVGRMDDLSN------DGMRMLGEIVEIYNNYGFETEIIA-ASIRHPMHVVEAALMGVDIVTMP 187 (218)
T ss_dssp HHTCSEEEEBHHHHHHTTS------CHHHHHHHHHHHHHHHTCSCEEEE-BSCCSHHHHHHHHHHTCSEEEEC
T ss_pred hcCCCEEEeeecchhhhcc------cchhhHHHHHHHHhhhcccceeee-eccCCHHHHHHHHHcCCCEEEcC
Confidence 9999998752 22 1121 22455555554432 12445555 67889999999999999988763
|
| >d1e0ta2 c.1.12.1 (A:1-69,A:168-344) Pyruvate kinase, N-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Phosphoenolpyruvate/pyruvate domain family: Pyruvate kinase domain: Pyruvate kinase, N-terminal domain species: Escherichia coli [TaxId: 562]
Probab=95.46 E-value=0.14 Score=42.92 Aligned_cols=167 Identities=13% Similarity=0.178 Sum_probs=97.7
Q ss_pred CCcHHHHHHHHhCCCceeecCC-CCCCHHHHHHHHHHHHhh---cCCcEEEEeecCCC-----CHHHHHHHHhcCCcEEE
Q 020013 22 ISGPELVAAVANAGGLGLLRAP-DWEAPDYLRDLIRKTRSL---TERPFGVGVVLAFP-----HNENIKAILSEKVAVLQ 92 (332)
Q Consensus 22 ~s~~~la~avs~aGglG~i~~~-~~~~~e~~~~~i~~~r~~---~~~p~gvnl~~~~~-----~~~~~~~~~~~~~~~I~ 92 (332)
..+++....+.++| +.++..- +..+.+..++.++.+|+. .++|.++-+-+..| +.+.+..+++.++|+|.
T Consensus 14 s~~~~~l~~li~aG-vdv~RlN~SHg~~~~~~~~i~~ir~~~~~~~~~~~I~~Dl~gp~ltekD~~~i~~a~~~~vD~ia 92 (246)
T d1e0ta2 14 TESEEMLAKMLDAG-MNVMRLNFSHGDYAEHGQRIQNLRNVMSKTGKTAAILLDTKGPALAEKDKQDLIFGCEQGVDFVA 92 (246)
T ss_dssp GCSHHHHHHHHHHT-EEEEEEETTSSCHHHHHHHHHHHHHHHHHHTCCCEEEEECCCCSSCHHHHHHHHHHHHHTCSEEE
T ss_pred cCCHHHHHHHHHCC-CCEEEEECCCCCHHHHHHHHHHHHHHHHHcCCCCcccccccccccccCcchhhhHHHHcCCCEEE
Confidence 46889999998887 3333220 124677777878777754 45666654433322 24557778899999999
Q ss_pred EccCCCcHHHH---HHHHhC---CCEEEEecCCHHHHHHHHH--cCCCEEEEecCCCCcccCCCCchhhhHHHHH----H
Q 020013 93 VSWGEYSEELV---LEAHSA---GVKVVPQVGSFDEARKAVN--AGVDAIIVQGREAGGHVIGQDGLISLLPMVV----D 160 (332)
Q Consensus 93 ~~~g~~~~~~i---~~~~~~---g~~v~~~v~s~~~a~~a~~--~g~D~ivv~G~eaGGh~~~~~~~~~ll~~i~----~ 160 (332)
++|=....++. +.+++. .++++.++.+.+......+ .-+|+|.+.=.+-|=.. .+..+|.+. .
T Consensus 93 lSFVr~~~Dv~~~r~~l~~~~~~~~~iiaKIE~~~al~nldeIi~~sDgImIaRGDLg~ei-----~~e~vp~~Qk~ii~ 167 (246)
T d1e0ta2 93 ASFIRKRSDVIEIREHLKAHGGENIHIISKIENQEGLNNFDEILEASDGIMVARGDLGVEI-----PVEEVIFAQKMMIE 167 (246)
T ss_dssp ESSCCSHHHHHHHHHHHHTTTCTTCEEEEEECSHHHHHTHHHHHHHSSEEEEEHHHHHHHS-----CHHHHHHHHHHHHH
T ss_pred EcCCCCHHHHHHHHHHHHHhCCCCceEEEEecchhhhhchHHHHhhcceEEEEccchhhhC-----CHHHHHHHHHHHHH
Confidence 98754333322 233333 4789999987765443322 24688887311111111 122222221 1
Q ss_pred HhCCCCCcEEeecCcCC------------HHHHHHHHHcCcceeee
Q 020013 161 LIGDRDIPIIAAGGIVD------------ARGYVAALSLGAQGICL 194 (332)
Q Consensus 161 ~~~~~~iPviaaGGI~~------------~~~v~~al~~GA~gV~~ 194 (332)
.....+.|||.+.-+-. -.|++.++.-|+|+|++
T Consensus 168 ~~~~~~kpvi~ATq~LeSM~~~p~PTRAEv~Dv~nav~dG~D~vmL 213 (246)
T d1e0ta2 168 KCIRARKVVITATMMLDSMIKNPRPTDAEAGDVANAILDGTDAVML 213 (246)
T ss_dssp HHHHHTCEEEEECC---------CCCHHHHHHHHHHHHHTCSEEEE
T ss_pred HHHHhCCCEEEehhhhhhhhcCCCCchHHHHHHHHHHHhCCcEEEE
Confidence 11112689999988743 34677888889999987
|
| >d1wx0a1 c.1.10.1 (A:1-211) Decameric fructose-6-phosphate aldolase/transaldolase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Aldolase family: Class I aldolase domain: Decameric fructose-6-phosphate aldolase/transaldolase species: Thermus thermophilus [TaxId: 274]
Probab=95.44 E-value=0.17 Score=41.27 Aligned_cols=142 Identities=19% Similarity=0.149 Sum_probs=89.6
Q ss_pred CHHHHHHHHHHHHhhcCCcEEEEeecCCCCHHHHHHH---HhcCCcEEE-EccCCCcHHHHHHHHhCCCEEEEe-cCCHH
Q 020013 47 APDYLRDLIRKTRSLTERPFGVGVVLAFPHNENIKAI---LSEKVAVLQ-VSWGEYSEELVLEAHSAGVKVVPQ-VGSFD 121 (332)
Q Consensus 47 ~~e~~~~~i~~~r~~~~~p~gvnl~~~~~~~~~~~~~---~~~~~~~I~-~~~g~~~~~~i~~~~~~g~~v~~~-v~s~~ 121 (332)
..+.....++.+.+..++|+.+-+.... .++.++.+ .....+++. +..-.+--+.++.+++.|+++-.+ |-|+.
T Consensus 44 ~~~~~~~~~~~~~~~~~~~is~ev~~~~-~e~m~~~a~~l~~~~~ni~iKIP~t~~G~~a~~~L~~~Gi~vn~T~vfs~~ 122 (211)
T d1wx0a1 44 TEEAFAAHLRAICETVGGPVSAEVTALE-AEAMVAEGRRLAAIHPNIVVKLPTTEEGLKACKRLSAEGIKVNMTLIFSAN 122 (211)
T ss_dssp CHHHHHHHHHHHHHHHTSCEEEECCCSS-HHHHHHHHHHHHHHCTTEEEEEESSHHHHHHHHHHHHTTCCEEEEEECSHH
T ss_pred HHHHHHHHHHHHHhhccCCeEEEEeeCc-HHHHHHHHHHHhhcCCceEEEeccchhhhHHHHHHhhcCCceeEEEecCHH
Confidence 3444555666666666778777765432 23333332 234455543 342211225678888999998765 67999
Q ss_pred HHHHHHHcCCCEEEEe-cC--CCCcccCCCCchhhhHHHHHHHhC--CCCCcEEeecCcCCHHHHHHHHHcCcceeeecc
Q 020013 122 EARKAVNAGVDAIIVQ-GR--EAGGHVIGQDGLISLLPMVVDLIG--DRDIPIIAAGGIVDARGYVAALSLGAQGICLGT 196 (332)
Q Consensus 122 ~a~~a~~~g~D~ivv~-G~--eaGGh~~~~~~~~~ll~~i~~~~~--~~~iPviaaGGI~~~~~v~~al~~GA~gV~~GT 196 (332)
++..|.++|+++|... |+ +.|. ..+.++.++.+.+. ..+..|+ ++.+.+.+++.+++.+|+|.+-+.-
T Consensus 123 Qa~~Aa~aga~yispyvgR~~d~g~------d~~~~~~~~~~~~~~~~~~tkil-~AS~R~~~~~~~~~~~G~d~vTi~~ 195 (211)
T d1wx0a1 123 QALLAARAGASYVSPFLGRVDDISW------DGGELLREIVEMIQVQDLPVKVI-AASIRHPRHVTEAALLGADIATMPH 195 (211)
T ss_dssp HHHHHHHTTCSEEEEBHHHHHHTTS------CHHHHHHHHHHHHHHTTCSCEEE-EBCCCSHHHHHHHHHTTCSEEEECH
T ss_pred HHHHHHHcCCCEEEEeeecchhccc------cchhHHHHHHHHHHhccccceeE-eeecCCHHHHHHHHHcCCCEEEeCH
Confidence 9999999999999762 32 1111 22555566555442 1244454 4779999999999999999997743
|
| >d1oy0a_ c.1.12.8 (A:) Ketopantoate hydroxymethyltransferase PanB {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Phosphoenolpyruvate/pyruvate domain family: Ketopantoate hydroxymethyltransferase PanB domain: Ketopantoate hydroxymethyltransferase PanB species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=95.42 E-value=0.15 Score=43.00 Aligned_cols=137 Identities=17% Similarity=0.177 Sum_probs=87.9
Q ss_pred CCcHHHHHHHHhCCCceee---------cCC----CCCCHHHHHHHHHHHHhhcCCcEEE-EeecCC--CC-HHHH----
Q 020013 22 ISGPELVAAVANAGGLGLL---------RAP----DWEAPDYLRDLIRKTRSLTERPFGV-GVVLAF--PH-NENI---- 80 (332)
Q Consensus 22 ~s~~~la~avs~aGglG~i---------~~~----~~~~~e~~~~~i~~~r~~~~~p~gv-nl~~~~--~~-~~~~---- 80 (332)
.-+..+|..+.++| +.+| ..+ ...+.|++....+.++......|-+ .+.... .. ++.+
T Consensus 24 aYD~~~A~~~~~ag-iDiiLVGDSlgmv~~G~~~T~~Vt~d~m~~H~~aV~rga~~~~iv~DmPf~s~~~s~~~a~~nA~ 102 (262)
T d1oy0a_ 24 AYDYSTARIFDEAG-IPVLLVGDSAANVVYGYDTTVPISIDELIPLVRGVVRGAPHALVVADLPFGSYEAGPTAALAAAT 102 (262)
T ss_dssp CCSHHHHHHHHTTT-CCEEEECTTHHHHTTCCSSSSSCCGGGTHHHHHHHHHHCTTSEEEEECCTTSSTTCHHHHHHHHH
T ss_pred CCCHHHHHHHHHcC-CCEEEEcCchhhhhcCCCCcceeeHHHHHHHHHHHHhccccceeEecchhhhcccchHHHHHHHH
Confidence 45788888887776 3333 221 1245677666667776655555544 332211 11 2222
Q ss_pred HHHHhcCCcEEEEccCCCcHHHHHHHHhCCCEEEEecC-----------------CH------HHHHHHHHcCCCEEEEe
Q 020013 81 KAILSEKVAVLQVSWGEYSEELVLEAHSAGVKVVPQVG-----------------SF------DEARKAVNAGVDAIIVQ 137 (332)
Q Consensus 81 ~~~~~~~~~~I~~~~g~~~~~~i~~~~~~g~~v~~~v~-----------------s~------~~a~~a~~~g~D~ivv~ 137 (332)
+.+.+.++++|-+-.|....++++.+.+.||+|+..++ +. ++++..+++|+..|+++
T Consensus 103 r~~~~~ga~avkleg~~~~~~~I~~L~~~gIPV~gHiGLtPQ~~~~~Gg~r~~Gk~~~~~~l~~da~~le~AGa~~ivlE 182 (262)
T d1oy0a_ 103 RFLKDGGAHAVKLEGGERVAEQIACLTAAGIPVMAHIGFTPQSVNTLGGFRVQGRGDAAEQTIADAIAVAEAGAFAVVME 182 (262)
T ss_dssp HHHHTTCCSEEEEEBSGGGHHHHHHHHHHTCCEEEEEECCC--------------CHHHHHHHHHHHHHHHHTCSEEEEE
T ss_pred HHHhccccceeeechhhhhHHHHHHHHhcCCceEEeeeecceeeeecCccceeccchhhhHhHHHHHHHHhCCcEEEecc
Confidence 34557899999997565567899999999999986542 11 23556678999999996
Q ss_pred cCCCCcccCCCCchhhhHHHHHHHhCCCCCcEEeec
Q 020013 138 GREAGGHVIGQDGLISLLPMVVDLIGDRDIPIIAAG 173 (332)
Q Consensus 138 G~eaGGh~~~~~~~~~ll~~i~~~~~~~~iPviaaG 173 (332)
.. ...+-.+|.+.+ ++|+|..|
T Consensus 183 ~V-----------p~~la~~It~~~---~IPtIGIG 204 (262)
T d1oy0a_ 183 MV-----------PAELATQITGKL---TIPTVGIG 204 (262)
T ss_dssp SC-----------CHHHHHHHHHHC---SSCEEEES
T ss_pred cc-----------cHhHHHHHHhhC---CceEEEec
Confidence 43 145667888887 89999544
|
| >d1vr6a1 c.1.10.4 (A:1-338) 3-deoxy-D-arabino-heptulosonate-7-phosphate synthase (DAHP synthase, AroG) {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Aldolase family: Class I DAHP synthetase domain: 3-deoxy-D-arabino-heptulosonate-7-phosphate synthase (DAHP synthase, AroG) species: Thermotoga maritima [TaxId: 2336]
Probab=95.37 E-value=0.75 Score=40.05 Aligned_cols=176 Identities=19% Similarity=0.261 Sum_probs=103.0
Q ss_pred ccceecCCCCCCCCcHHHHHHHH----hCCC---ceeecCCC-----CCC-HHHHHHHHHHHHhhcCCcEEEEeecCCCC
Q 020013 10 EYGIVQAPLGPDISGPELVAAVA----NAGG---LGLLRAPD-----WEA-PDYLRDLIRKTRSLTERPFGVGVVLAFPH 76 (332)
Q Consensus 10 ~~Pii~apM~~g~s~~~la~avs----~aGg---lG~i~~~~-----~~~-~e~~~~~i~~~r~~~~~p~gvnl~~~~~~ 76 (332)
+..+|.||-. +-+.+.+..++ ++|. .+.+.-++ +.. -++-.++++++++.++.|+-..+.-
T Consensus 94 ~l~lIAGPC~--vES~e~~~~~A~~lke~g~~~~r~g~fKpRtsp~sf~g~g~~gL~~l~~~k~~~glpvvTdV~~---- 167 (338)
T d1vr6a1 94 YFTIIAGPCS--VEGREMLMETAHFLSELGVKVLRGGAYKPRTSPYSFQGLGEKGLEYLREAADKYGMYVVTEALG---- 167 (338)
T ss_dssp EEEEEEECSB--CCCHHHHHHHHHHHHHTTCCEEECBSCCCCCSTTSCCCCTHHHHHHHHHHHHHHTCEEEEECSS----
T ss_pred ceEEEecCCC--CCCHHHHHHHHHHHHHhCccccccceecccccccccccchHHHHHHHHHHHhhcCceeEEeccc----
Confidence 4678888876 56665554444 4442 22221111 111 1334467788888777776665443
Q ss_pred HHHHHHHHhcCCcEEEEcc-CCCcHHHHHHHHhCCCEEEEe---cCCHHHHHHH----HHcCCCEEEE--ecCC-CCccc
Q 020013 77 NENIKAILSEKVAVLQVSW-GEYSEELVLEAHSAGVKVVPQ---VGSFDEARKA----VNAGVDAIIV--QGRE-AGGHV 145 (332)
Q Consensus 77 ~~~~~~~~~~~~~~I~~~~-g~~~~~~i~~~~~~g~~v~~~---v~s~~~a~~a----~~~g~D~ivv--~G~e-aGGh~ 145 (332)
..+++.+.+. +|+++++. -+-..++++.+-+.+.+|..+ -.++++...+ ...|-+-|++ .|.. ..+..
T Consensus 168 ~~~~~~~~e~-~DilQI~A~~~~n~~LL~~~g~t~kpV~lKkG~~~s~~e~l~aae~i~~~Gn~~vilcERG~~t~~~~~ 246 (338)
T d1vr6a1 168 EDDLPKVAEY-ADIIQIGARNAQNFRLLSKAGSYNKPVLLKRGFMNTIEEFLLSAEYIANSGNTKIILCERGIRTFEKAT 246 (338)
T ss_dssp GGGHHHHHHH-CSEEEECGGGTTCHHHHHHHHTTCSCEEEECCTTCCHHHHHHHHHHHHHTTCCCEEEEECCBCCSCCSS
T ss_pred hhhhhhhhce-eeeEEechhhccCHHHHHHhhccCCcEEecCccccchhhhhhhHHHHHhcCCccceeeecccccccccc
Confidence 4567777665 99999963 233357788877788888754 3577775544 4467655554 3431 11111
Q ss_pred CCCCchhhhHHHHHHHhCCCCCcEEee----cCcCCH--HHHHHHHHcCcceeeecc
Q 020013 146 IGQDGLISLLPMVVDLIGDRDIPIIAA----GGIVDA--RGYVAALSLGAQGICLGT 196 (332)
Q Consensus 146 ~~~~~~~~ll~~i~~~~~~~~iPviaa----GGI~~~--~~v~~al~~GA~gV~~GT 196 (332)
-....+..++.+++.. ..|||.. ||-+.. .=..+++++||||+++=+
T Consensus 247 -~~~lD~~~i~~~k~~~---~lPVi~DpsHs~G~r~~v~~larAAvA~GadGl~iE~ 299 (338)
T d1vr6a1 247 -RNTLDISAVPIIRKES---HLPILVDPSHSGGRRDLVIPLSRAAIAVGAHGIIVEV 299 (338)
T ss_dssp -SSBCCTTHHHHHHHHB---SSCEEECHHHHHCSGGGHHHHHHHHHHHTCSEEEEEB
T ss_pred -ccchhhcccceeeccc---cCceeeCCCCCCCchhHHHHHHHHHHHhCCCEEEEEe
Confidence 1123466777777654 6899873 443221 224577889999999843
|
| >d1twda_ c.1.30.1 (A:) Copper homeostasis protein CutC {Shigella flexneri [TaxId: 623]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: CutC-like family: CutC-like domain: Copper homeostasis protein CutC species: Shigella flexneri [TaxId: 623]
Probab=95.36 E-value=0.036 Score=46.63 Aligned_cols=97 Identities=19% Similarity=0.230 Sum_probs=68.4
Q ss_pred EecCCHHHHHHHHHcCCCEEEE-ecCCCCcccCCCCchhhhHHHHHHHhCCCCCcEEe----ecC--cCCHHH-------
Q 020013 115 PQVGSFDEARKAVNAGVDAIIV-QGREAGGHVIGQDGLISLLPMVVDLIGDRDIPIIA----AGG--IVDARG------- 180 (332)
Q Consensus 115 ~~v~s~~~a~~a~~~g~D~ivv-~G~eaGGh~~~~~~~~~ll~~i~~~~~~~~iPvia----aGG--I~~~~~------- 180 (332)
..+.|++++..|++.|+|-|=+ .+.+.||.+ ++..++..+++.+ ++||.+ -|| +.+..+
T Consensus 5 vcv~s~~~a~~A~~~GAdRIELc~~l~~GGlT----PS~g~i~~~~~~~---~iPv~vMIRPR~GdF~Ys~~E~~~M~~d 77 (247)
T d1twda_ 5 ICCYSMECALTAQQNGADRVELCAAPKEGGLT----PSLGVLKSVRQRV---TIPVHPIIRPRGGDFCYSDGEFAAILED 77 (247)
T ss_dssp EEESSHHHHHHHHHTTCSEEEECBCGGGTCBC----CCHHHHHHHHHHC---CSCEEEBCCSSSSCSCCCHHHHHHHHHH
T ss_pred EEeCCHHHHHHHHHcCCCEEEEcCCcccCCCC----CCHHHHHHHHHhc---CCCeEEEEecCCCCCCCCHHHHHHHHHH
Confidence 3578999999999999999976 666777765 5577788888776 789765 344 445544
Q ss_pred HHHHHHcCcceeeeccccccCccCCCCHHHHHHHhc-CCCce
Q 020013 181 YVAALSLGAQGICLGTRFVASEESYAHPEYKRKLVE-MDKTE 221 (332)
Q Consensus 181 v~~al~~GA~gV~~GT~fl~t~Es~~~~~~k~~~~~-~~~t~ 221 (332)
+..+..+|++||++|- .+++..++...-+.+++ +.+..
T Consensus 78 i~~~k~~G~dGvV~G~---L~~dg~iD~~~~~~L~~~a~~l~ 116 (247)
T d1twda_ 78 VRTVRELGFPGLVTGV---LDVDGNVDMPRMEKIMAAAGPLA 116 (247)
T ss_dssp HHHHHHTTCSEEEECC---BCTTSSBCHHHHHHHHHHHTTSE
T ss_pred HHHHHHcCCCeEEEEE---ECCCCCccHHHHHHHHHHhcccC
Confidence 4455569999999995 35555666665555554 45443
|
| >d1dxea_ c.1.12.5 (A:) 2-dehydro-3-deoxy-galactarate aldolase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Phosphoenolpyruvate/pyruvate domain family: HpcH/HpaI aldolase domain: 2-dehydro-3-deoxy-galactarate aldolase species: Escherichia coli [TaxId: 562]
Probab=95.35 E-value=0.35 Score=40.51 Aligned_cols=186 Identities=15% Similarity=0.089 Sum_probs=112.0
Q ss_pred hhhcCCccceecCCCCCCCCcHHHHHHHHhCCCceeecC--C-CCCCHHHHHHHHHHHHhhcCCcEEEEeecCCCCHHHH
Q 020013 4 RGMLGFEYGIVQAPLGPDISGPELVAAVANAGGLGLLRA--P-DWEAPDYLRDLIRKTRSLTERPFGVGVVLAFPHNENI 80 (332)
Q Consensus 4 ~~~l~~~~Pii~apM~~g~s~~~la~avs~aGglG~i~~--~-~~~~~e~~~~~i~~~r~~~~~p~gvnl~~~~~~~~~~ 80 (332)
.+.|.-..|++..-+ .+++|..+..++.+| +.++.. . +..+.+.+...++.++.. +.+--|- ++..+...+
T Consensus 8 k~~l~~g~~~~G~~~--~~~~p~~~ei~a~~G-~Dfv~iD~EHg~~~~~~~~~~i~a~~~~-g~~~~VR--vp~~~~~~i 81 (253)
T d1dxea_ 8 KAALAAKQVQIGCWS--ALSNPISTEVLGLAG-FDWLVLDGEHAPNDISTFIPQLMALKGS-ASAPVVR--VPTNEPVII 81 (253)
T ss_dssp HHHHHTTCCEEEEEE--CSCSHHHHHHHTTSC-CSEEEEESSSSSCCHHHHHHHHHHTTTC-SSEEEEE--CSSSCHHHH
T ss_pred HHHHHCCCCEEEEEe--cCCCHHHHHHHHcCC-CCEEEEecccCCCChhHHHHHHHHHhcc-CCCceec--CCCCCHHHH
Confidence 444555567774444 368899988888877 555532 1 235778888777777543 2222233 333456788
Q ss_pred HHHHhcCCcEEEEccCCCcHHHHHHHH--------------------------------hCCCEEEEecCCHHHHHHHHH
Q 020013 81 KAILSEKVAVLQVSWGEYSEELVLEAH--------------------------------SAGVKVVPQVGSFDEARKAVN 128 (332)
Q Consensus 81 ~~~~~~~~~~I~~~~g~~~~~~i~~~~--------------------------------~~g~~v~~~v~s~~~a~~a~~ 128 (332)
..+++.|++.|.+..= ...+.++.+. +..+.++.++-|.+-...+.+
T Consensus 82 ~~~LD~Ga~GIivP~v-~s~eea~~~v~~~~ypP~G~Rg~~~~~~~~~~~~~~~~~~~~n~~~~vi~~IEt~~av~nlee 160 (253)
T d1dxea_ 82 KRLLDIGFYNFLIPFV-ETKEEAELAVASTRYPPEGIRGVSVSHRANMFGTVADYFAQSNKNITILVQIESQQGVDNVDA 160 (253)
T ss_dssp HHHHHTTCCEEEESCC-CSHHHHHHHHHTTSCTTTCCCCCCSSSGGGGGGTSTTHHHHHTTSCEEEEEECSHHHHHTHHH
T ss_pred HHHHhcCccEEEeccc-CCHHHHHHHHHhheeCCCCCcCcCcceeccccccccccccccccceEEEeecccHHHHHHHHH
Confidence 8999999999987632 2232232221 124567788887765544332
Q ss_pred ----cCCCEEEEecCC---CCcccC--CCCchhhhHHHHHHHhCCCCCcEEeecCcCCHHHHHHHHHcCcceeeecccc
Q 020013 129 ----AGVDAIIVQGRE---AGGHVI--GQDGLISLLPMVVDLIGDRDIPIIAAGGIVDARGYVAALSLGAQGICLGTRF 198 (332)
Q Consensus 129 ----~g~D~ivv~G~e---aGGh~~--~~~~~~~ll~~i~~~~~~~~iPviaaGGI~~~~~v~~al~~GA~gV~~GT~f 198 (332)
-|+|+|.+-..+ +=|..+ ........+.++.+..+..++|+-.- ..+++++..++..|++.+.+|+-.
T Consensus 161 I~av~giD~i~iGp~DLs~slG~~g~~~~p~v~~ai~~v~~~~~~~gk~~g~~--~~~~~~~~~~~~~G~~~i~~g~D~ 237 (253)
T d1dxea_ 161 IAATEGVDGIFVGPSDLAAALGHLGNASHPDVQKAIQHIFNRASAHGKPSGIL--APVEADARRYLEWGATFVAVGSDL 237 (253)
T ss_dssp HHTSTTCCEEEECHHHHHHHTTCTTCTTSHHHHHHHHHHHHHHHHTTCCEEEE--CCSHHHHHHHHHTTCCEEEEEEHH
T ss_pred HhccCCCceEEEecCcHHhhccCCCCCCChhHHHHHHHHHHHHHHcCCCeEEe--cCCHHHHHHHHHcCCCEEEehHHH
Confidence 499999882211 012211 12233555566655544336776433 237899999999999999999743
|
| >d1vyra_ c.1.4.1 (A:) Pentaerythritol tetranirate reductase {Enterobacter cloacae [TaxId: 550]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: FMN-linked oxidoreductases family: FMN-linked oxidoreductases domain: Pentaerythritol tetranirate reductase species: Enterobacter cloacae [TaxId: 550]
Probab=95.25 E-value=0.029 Score=50.13 Aligned_cols=73 Identities=16% Similarity=0.275 Sum_probs=52.6
Q ss_pred HHHHHcCCCEEEEecCCCCcccCCCCchhhhHHHHHHHhCCCCCcEEeecCcCCHHHHHHHHHcC-cceeeeccccccCc
Q 020013 124 RKAVNAGVDAIIVQGREAGGHVIGQDGLISLLPMVVDLIGDRDIPIIAAGGIVDARGYVAALSLG-AQGICLGTRFVASE 202 (332)
Q Consensus 124 ~~a~~~g~D~ivv~G~eaGGh~~~~~~~~~ll~~i~~~~~~~~iPviaaGGI~~~~~v~~al~~G-A~gV~~GT~fl~t~ 202 (332)
+...+.|+|++-+......+ +......+-..+++.+ ++||++.|++ |++.+.++|+-| ||.|.||..|++.+
T Consensus 257 ~~l~~~gvd~i~vs~~~~~~---~~~~~~~~~~~~~~~~---~~~vi~~G~~-t~~~ae~~l~~G~~DlV~~gR~liadP 329 (363)
T d1vyra_ 257 EELAKRGIAYLHMSETDLAG---GKPYSEAFRQKVRERF---HGVIIGAGAY-TAEKAEDLIGKGLIDAVAFGRDYIANP 329 (363)
T ss_dssp HHHHHTTCSEEEEECCBTTB---CCCCCHHHHHHHHHHC---CSEEEEESSC-CHHHHHHHHHTTSCSEEEESHHHHHCT
T ss_pred HHHHhcCCeeeecccCCccC---CccccHHHHHHHHHhc---CceEEecCCC-CHHHHHHHHHCCCcceehhhHHHHHCc
Confidence 34567899999886432211 1112234445666666 6888887766 999999999999 79999999999876
Q ss_pred c
Q 020013 203 E 203 (332)
Q Consensus 203 E 203 (332)
+
T Consensus 330 ~ 330 (363)
T d1vyra_ 330 D 330 (363)
T ss_dssp T
T ss_pred c
Confidence 5
|
| >d2r25b1 c.23.1.1 (B:1087-1214) Response regulator Sin1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Flavodoxin-like superfamily: CheY-like family: CheY-related domain: Response regulator Sin1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=95.23 E-value=0.1 Score=38.97 Aligned_cols=85 Identities=16% Similarity=0.142 Sum_probs=61.5
Q ss_pred HHHHHhCCCEEEEecCCHHHHHHHHH------cCCCEEEEecCCCCcccCCCCchhhhHHHHHHHhCCCCCcEEeecCcC
Q 020013 103 VLEAHSAGVKVVPQVGSFDEARKAVN------AGVDAIIVQGREAGGHVIGQDGLISLLPMVVDLIGDRDIPIIAAGGIV 176 (332)
Q Consensus 103 i~~~~~~g~~v~~~v~s~~~a~~a~~------~g~D~ivv~G~eaGGh~~~~~~~~~ll~~i~~~~~~~~iPviaaGGI~ 176 (332)
.+.++..|...+..+.+.++|..+.+ ...|.|+++-.= .....+.+++++++... .++|||+--+-.
T Consensus 18 ~~~L~~~g~~~v~~a~~g~eAl~~l~~~~~~~~~~dlillD~~m------P~~dG~el~~~ir~~~~-~~~piI~lT~~~ 90 (128)
T d2r25b1 18 KRMLNLEGIENIELACDGQEAFDKVKELTSKGENYNMIFMDVQM------PKVDGLLSTKMIRRDLG-YTSPIVALTAFA 90 (128)
T ss_dssp HHHHHHTTCCCEEEESSHHHHHHHHHHHHHHTCCCSEEEECSCC------SSSCHHHHHHHHHHHSC-CCSCEEEEESCC
T ss_pred HHHHHHcCCeEEEEEcChHHHHHHHHhhhhccCCCCEEEEEeCC------CCCCHHHHHHHHHHccC-CCCeEEEEECCC
Confidence 34456678877777888888876543 468999985321 11234778888876543 268999888888
Q ss_pred CHHHHHHHHHcCcceeee
Q 020013 177 DARGYVAALSLGAQGICL 194 (332)
Q Consensus 177 ~~~~v~~al~~GA~gV~~ 194 (332)
+.++..+++.+||++...
T Consensus 91 ~~~~~~~~~~~G~~~~l~ 108 (128)
T d2r25b1 91 DDSNIKECLESGMNGFLS 108 (128)
T ss_dssp SHHHHHHHHHTTCSEEEE
T ss_pred CHHHHHHHHHcCCCEEEE
Confidence 999999999999998763
|
| >d2czda1 c.1.2.3 (A:1-206) Orotidine 5'-monophosphate decarboxylase (OMP decarboxylase) {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Ribulose-phoshate binding barrel family: Decarboxylase domain: Orotidine 5'-monophosphate decarboxylase (OMP decarboxylase) species: Pyrococcus horikoshii [TaxId: 53953]
Probab=95.15 E-value=0.28 Score=39.60 Aligned_cols=135 Identities=18% Similarity=0.152 Sum_probs=78.8
Q ss_pred HHHHHhhcCCcEEEEeecCC-CC--HHHHHHHHhcCCcEEEEccCCCcHHHHHHHHhCCCEEEEec-CC----------H
Q 020013 55 IRKTRSLTERPFGVGVVLAF-PH--NENIKAILSEKVAVLQVSWGEYSEELVLEAHSAGVKVVPQV-GS----------F 120 (332)
Q Consensus 55 i~~~r~~~~~p~gvnl~~~~-~~--~~~~~~~~~~~~~~I~~~~g~~~~~~i~~~~~~g~~v~~~v-~s----------~ 120 (332)
++++++..+.++-..+-..+ +. ...++.+.+.++|++.+|. ....+.++.+++.+..+.... ++ .
T Consensus 43 i~~l~~~~~~~if~DlK~~Di~~t~~~~~~~~~~~gad~~Tvh~-~~g~~~i~~~~~~~~~~~~~~~s~~~~~~~~~~~~ 121 (206)
T d2czda1 43 IRRLKEETGVEIIADLKLADIPNTNRLIARKVFGAGADYVIVHT-FVGRDSVMAVKELGEIIMVVEMSHPGALEFINPLT 121 (206)
T ss_dssp HHHHHHHHCCEEEEEEEECSCHHHHHHHHHHHHHTTCSEEEEES-TTCHHHHHHHHTTSEEEEECCCCSGGGGTTTGGGH
T ss_pred HHHHHHhcCCeEEEEeeeeeecccchheehhhccccccEEEeee-cccHHHHHHhhhcccceEEEeccCCcccccccHHH
Confidence 44454444556555554432 11 3446667788999999983 345677888877665444321 11 1
Q ss_pred HH-HHHHHHcCCCEEEEecCCCCcccCCCCchhhhHHHHHHHhCCCCCcEEeecCcC-CHHHHHHHHHcCcceeeecccc
Q 020013 121 DE-ARKAVNAGVDAIIVQGREAGGHVIGQDGLISLLPMVVDLIGDRDIPIIAAGGIV-DARGYVAALSLGAQGICLGTRF 198 (332)
Q Consensus 121 ~~-a~~a~~~g~D~ivv~G~eaGGh~~~~~~~~~ll~~i~~~~~~~~iPviaaGGI~-~~~~v~~al~~GA~gV~~GT~f 198 (332)
+. ...+.+.+.++++..+ .. ..-+..+++..+. +..+ .+.||+ .+.+..+++..|||-+++|+.+
T Consensus 122 ~~~~~~a~~~~~~g~~~~~-----~~------~~~~~~~r~~~~~-~~~i-~~pGI~~~~~~~~~ai~~Gad~iVvGR~I 188 (206)
T d2czda1 122 DRFIEVANEIEPFGVIAPG-----TR------PERIGYIRDRLKE-GIKI-LAPGIGAQGGKAKDAVKAGADYIIVGRAI 188 (206)
T ss_dssp HHHHHHHHHHCCSEEECCC-----SS------THHHHHHHHHSCT-TCEE-EECCCCSSTTHHHHHHHHTCSEEEECHHH
T ss_pred HHHHHHHHhcccccccccc-----cC------chhhhhhhhhhcc-cceE-ECCCccccCCCHHHHHHhCCCEEEEChhh
Confidence 12 2334566777765421 11 1234455555432 3444 445553 3567888999999999999999
Q ss_pred ccCcc
Q 020013 199 VASEE 203 (332)
Q Consensus 199 l~t~E 203 (332)
..++.
T Consensus 189 ~~a~d 193 (206)
T d2czda1 189 YNAPN 193 (206)
T ss_dssp HTSSS
T ss_pred ccCCC
Confidence 87643
|
| >d1xhfa1 c.23.1.1 (A:2-122) Aerobic respiration control protein ArcA, N-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Flavodoxin-like superfamily: CheY-like family: CheY-related domain: Aerobic respiration control protein ArcA, N-terminal domain species: Escherichia coli [TaxId: 562]
Probab=95.05 E-value=0.12 Score=38.16 Aligned_cols=83 Identities=13% Similarity=0.149 Sum_probs=60.9
Q ss_pred HHHHHHhCCCEEEEecCCHHHHHHH-HHcCCCEEEEecCCCCcccCCCCchhhhHHHHHHHhCCCCCcEEeecCcCCHHH
Q 020013 102 LVLEAHSAGVKVVPQVGSFDEARKA-VNAGVDAIIVQGREAGGHVIGQDGLISLLPMVVDLIGDRDIPIIAAGGIVDARG 180 (332)
Q Consensus 102 ~i~~~~~~g~~v~~~v~s~~~a~~a-~~~g~D~ivv~G~eaGGh~~~~~~~~~ll~~i~~~~~~~~iPviaaGGI~~~~~ 180 (332)
+.+.+++.|..+. .+.+.+++... .+..+|.|++.=. ..+ ...+.+++.+++.. ++|||.-.|-.+.++
T Consensus 18 l~~~L~~~g~~v~-~a~~~~~al~~l~~~~~dlii~D~~-mp~-----~~G~~~~~~~r~~~---~~pii~lt~~~~~~~ 87 (121)
T d1xhfa1 18 LKSIFEAEGYDVF-EATDGAEMHQILSEYDINLVIMDIN-LPG-----KNGLLLARELREQA---NVALMFLTGRDNEVD 87 (121)
T ss_dssp HHHHHHTTTCEEE-EESSHHHHHHHHHHSCCSEEEECSS-CSS-----SCHHHHHHHHHHHC---CCEEEEEESCCSHHH
T ss_pred HHHHHHHCCCEEE-EECChHHHHHHHHhcCCCEEEeecc-cCC-----ccCcHHHHHHHhcC---CCcEEEEECCCCHHH
Confidence 3455677888877 56787777654 4567999998522 111 12366777777654 799999999999999
Q ss_pred HHHHHHcCcceeee
Q 020013 181 YVAALSLGAQGICL 194 (332)
Q Consensus 181 v~~al~~GA~gV~~ 194 (332)
..+++.+||+....
T Consensus 88 ~~~a~~~Ga~dyl~ 101 (121)
T d1xhfa1 88 KILGLEIGADDYIT 101 (121)
T ss_dssp HHHHHHHTCSEEEE
T ss_pred HHHHHHcCCCEEEe
Confidence 99999999998764
|
| >d1qo2a_ c.1.2.1 (A:) Phosphoribosylformimino-5-aminoimidazole carboxamide ribotite isomerase HisA {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Ribulose-phoshate binding barrel family: Histidine biosynthesis enzymes domain: Phosphoribosylformimino-5-aminoimidazole carboxamide ribotite isomerase HisA species: Thermotoga maritima [TaxId: 2336]
Probab=94.98 E-value=0.013 Score=49.39 Aligned_cols=77 Identities=14% Similarity=0.148 Sum_probs=52.1
Q ss_pred HHHHHHHHcCCCEEEEecCCCCcccCCCCchhhhHHHHHHHhCCCCCcEEeecCcCCHHHHHHHHHcCcceeeecccccc
Q 020013 121 DEARKAVNAGVDAIIVQGREAGGHVIGQDGLISLLPMVVDLIGDRDIPIIAAGGIVDARGYVAALSLGAQGICLGTRFVA 200 (332)
Q Consensus 121 ~~a~~a~~~g~D~ivv~G~eaGGh~~~~~~~~~ll~~i~~~~~~~~iPviaaGGI~~~~~v~~al~~GA~gV~~GT~fl~ 200 (332)
+.|+...+.|+|.+.+---++- .. +......++..+.+. ..|+...|||.+.+++..++..||+-|+++|.++.
T Consensus 34 ~~a~~~~~~g~~~l~ivDLda~-~~-~~~~~~~~~~~~~~~----~~pl~~gGGI~s~~~~~~~~~~Ga~kVvi~s~~~~ 107 (241)
T d1qo2a_ 34 ELVEKLIEEGFTLIHVVDLSNA-IE-NSGENLPVLEKLSEF----AEHIQIGGGIRSLDYAEKLRKLGYRRQIVSSKVLE 107 (241)
T ss_dssp HHHHHHHHTTCCCEEEEEHHHH-HH-CCCTTHHHHHHGGGG----GGGEEEESSCCSHHHHHHHHHTTCCEEEECHHHHH
T ss_pred HHHHHHHHCCCCEEEEEecccc-cc-cCCcchhheehhccc----ccchhhhhhhhhhhhhhhccccccceEecCccccc
Confidence 4566666788888866322110 00 111123344444333 47999999999999999999999999999998876
Q ss_pred Ccc
Q 020013 201 SEE 203 (332)
Q Consensus 201 t~E 203 (332)
.++
T Consensus 108 ~~~ 110 (241)
T d1qo2a_ 108 DPS 110 (241)
T ss_dssp CTT
T ss_pred Cch
Confidence 643
|
| >d1p1xa_ c.1.10.1 (A:) Deoxyribose-phosphate aldolase DeoC {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Aldolase family: Class I aldolase domain: Deoxyribose-phosphate aldolase DeoC species: Escherichia coli [TaxId: 562]
Probab=94.94 E-value=0.46 Score=39.70 Aligned_cols=109 Identities=20% Similarity=0.254 Sum_probs=61.8
Q ss_pred HHHHHHhcCCcEEEEcc-------CCCc--HHHHHH----HHhCCC--EEEEec---CCHHHH----HHHHHcCCCEEEE
Q 020013 79 NIKAILSEKVAVLQVSW-------GEYS--EELVLE----AHSAGV--KVVPQV---GSFDEA----RKAVNAGVDAIIV 136 (332)
Q Consensus 79 ~~~~~~~~~~~~I~~~~-------g~~~--~~~i~~----~~~~g~--~v~~~v---~s~~~a----~~a~~~g~D~ivv 136 (332)
.++.+++.|++=|.+-. |... .+.++. ++..|. ||+... ++.+.. +.+.++|+|+|..
T Consensus 89 E~~~Ai~~GAdEID~Vin~~~l~~g~~~~v~~ei~~v~~~~~~~~~~lKVIlEt~~Ltd~e~i~~a~~ia~~aGadFvKT 168 (250)
T d1p1xa_ 89 ETRAAIAYGADEVDVVFPYRALMAGNEQVGFDLVKACKEACAAANVLLKVIIETGELKDEALIRKASEISIKAGADFIKT 168 (250)
T ss_dssp HHHHHHHHTCSEEEEECCHHHHHTTCCHHHHHHHHHHHHHHHHTTCEEEEECCHHHHCSHHHHHHHHHHHHHTTCSEEEC
T ss_pred HHHHHHHcCCCeEEEeecchhhccccHHHHHHHHHHHHHhhccCCceEEEEEeccccCcHHHHHHHHHHHHHcCcCeEEe
Confidence 35567788988776531 3211 122222 234454 566443 344332 3357899999975
Q ss_pred -ecCCCCcccCCCCchhhhHHHHH-HHhCCCCCcEEeecCcCCHHHHHHHHHcCcc
Q 020013 137 -QGREAGGHVIGQDGLISLLPMVV-DLIGDRDIPIIAAGGIVDARGYVAALSLGAQ 190 (332)
Q Consensus 137 -~G~eaGGh~~~~~~~~~ll~~i~-~~~~~~~iPviaaGGI~~~~~v~~al~~GA~ 190 (332)
.|+..+|- ......++.+.. +.....++.|=++|||.|.+++.+++.+|++
T Consensus 169 STG~~~~ga---t~~~v~~m~~~i~~~~~~~~vgIKasGGIrt~~~a~~~i~~ga~ 221 (250)
T d1p1xa_ 169 STGKVAVNA---TPESARIMMEVIRDMGVEKTVGFKPAGGVRTAEDAQKYLAIADE 221 (250)
T ss_dssp CCSCSSCCC---CHHHHHHHHHHHHHHTCTTTCEEECBSSCCSHHHHHHHHHHHHH
T ss_pred cCCcCCCCC---CHHHHHHHHHHhhhhccCcceeeEecCCCCCHHHHHHHHHHHHH
Confidence 34322221 122333333332 2211236889999999999999999999987
|
| >d1gwja_ c.1.4.1 (A:) Morphinone reductase {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: FMN-linked oxidoreductases family: FMN-linked oxidoreductases domain: Morphinone reductase species: Pseudomonas putida [TaxId: 303]
Probab=94.85 E-value=0.04 Score=49.37 Aligned_cols=72 Identities=17% Similarity=0.109 Sum_probs=52.8
Q ss_pred HHHcCCCEEEEecCCCCcccCCCCchhhhHHHHHHHhCCCCCcEEeecCcCCHHHHHHHHHcC-cceeeeccccccCcc
Q 020013 126 AVNAGVDAIIVQGREAGGHVIGQDGLISLLPMVVDLIGDRDIPIIAAGGIVDARGYVAALSLG-AQGICLGTRFVASEE 203 (332)
Q Consensus 126 a~~~g~D~ivv~G~eaGGh~~~~~~~~~ll~~i~~~~~~~~iPviaaGGI~~~~~v~~al~~G-A~gV~~GT~fl~t~E 203 (332)
....|+|++-+.....-+.. .. ....+...+++.+ ++||++.|+| +++.+.++|+-| ||.|.||..|++.++
T Consensus 261 ld~~~i~~~~~~~~~~~~~~-~~-~~~~~~~~i~~~~---~~pvi~~G~i-~~~~ae~~l~~g~aDlV~~gR~~iadPd 333 (374)
T d1gwja_ 261 LDRRGLAYLHFNEPDWIGGD-IT-YPEGFREQMRQRF---KGGLIYCGNY-DAGRAQARLDDNTADAVAFGRPFIANPD 333 (374)
T ss_dssp HHHHTCSEEEEECSCBTTBC-CC-CCTTHHHHHHHHC---CSEEEEESSC-CHHHHHHHHHTTSCSEEEESHHHHHCTT
T ss_pred ccccCceEEEeccCcccCCC-cc-hhHHHHHHHHHHc---CCCEEEECCc-CHHHHHHHHHcCCCcEehhhHHHHHCcc
Confidence 45679999987654322211 11 1123445677777 7999999999 899999999987 999999999998765
|
| >d1vkfa_ c.1.29.1 (A:) Glycerol uptake operon antiterminator-related protein TM1436 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: GlpP-like family: GlpP-like domain: Glycerol uptake operon antiterminator-related protein TM1436 species: Thermotoga maritima [TaxId: 2336]
Probab=94.71 E-value=0.38 Score=37.69 Aligned_cols=126 Identities=17% Similarity=0.120 Sum_probs=81.6
Q ss_pred HHHHHHHHHHHhhcCCcEEEEeec---CCCCHHHHHHHHhcCCcEEEEccCCCcHHHHHHHHhCCCEEEEec---C--CH
Q 020013 49 DYLRDLIRKTRSLTERPFGVGVVL---AFPHNENIKAILSEKVAVLQVSWGEYSEELVLEAHSAGVKVVPQV---G--SF 120 (332)
Q Consensus 49 e~~~~~i~~~r~~~~~p~gvnl~~---~~~~~~~~~~~~~~~~~~I~~~~g~~~~~~i~~~~~~g~~v~~~v---~--s~ 120 (332)
..+.+.++.+++. ++..-||+=. ...++..++.+.+.++|.|... -..+++..++.|+..+--+ . +.
T Consensus 31 ~~l~~~v~~~k~~-gK~v~VHiDLi~GL~~d~~av~flk~~~~dGIIST----k~~~i~~Ak~~Gl~tIqR~FliDS~al 105 (172)
T d1vkfa_ 31 LNLKFHLKILKDR-GKTVFVDMDFVNGLGEGEEAILFVKKAGADGIITI----KPKNYVVAKKNGIPAVLRFFALDSKAV 105 (172)
T ss_dssp TTHHHHHHHHHHT-TCEEEEEGGGEETCCSSHHHHHHHHHHTCSEEEES----CHHHHHHHHHTTCCEEEEEECCSHHHH
T ss_pred HHHHHHHHHHHHc-CCEEEEEeeecCCCCCCHHHHHHHHHcCCCEEEEC----CHHHHHHHHHcCCeEEEEEEeeehHHH
Confidence 3466777888765 4445555422 1234556666667799998765 3568999999998766322 2 34
Q ss_pred HHHHH-HHHcCCCEEEEecCCCCcccCCCCchhhhHHHHHHHhCCCCCcEEeecCcCCHHHHHHHHHcCcceeeec
Q 020013 121 DEARK-AVNAGVDAIIVQGREAGGHVIGQDGLISLLPMVVDLIGDRDIPIIAAGGIVDARGYVAALSLGAQGICLG 195 (332)
Q Consensus 121 ~~a~~-a~~~g~D~ivv~G~eaGGh~~~~~~~~~ll~~i~~~~~~~~iPviaaGGI~~~~~v~~al~~GA~gV~~G 195 (332)
+...+ .....+|+|=+-. |. +.|.+.+... +.|||+.|=|.+.+++.++++.| .+|--.
T Consensus 106 ~~~~~~i~~~~PD~IEiLP--------G~-----i~p~ii~~~~--~~piIAGGLI~~~edv~~al~~g-~aVSTS 165 (172)
T d1vkfa_ 106 ERGIEQIETLGVDVVEVLP--------GA-----VAPKVARKIP--GRTVIAAGLVETEEEAREILKHV-SAISTS 165 (172)
T ss_dssp HHHHHHHHHHTCSEEEEES--------GG-----GHHHHHTTST--TSEEEEESCCCSHHHHHHHTTTS-SEEEEC
T ss_pred HHHHHHHhhcCCCEEEECC--------ch-----hhHHHHHHhc--CCCEEeeCCcCCHHHHHHHHhcC-eEEECC
Confidence 44443 4466999996621 10 1245544443 68999999999999999999754 466543
|
| >d1a3xa2 c.1.12.1 (A:1-87,A:189-366) Pyruvate kinase, N-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Phosphoenolpyruvate/pyruvate domain family: Pyruvate kinase domain: Pyruvate kinase, N-terminal domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=94.68 E-value=0.12 Score=43.88 Aligned_cols=168 Identities=18% Similarity=0.274 Sum_probs=99.0
Q ss_pred CCCcHHHHHHHHhCCCceeecCC-CCCCHHHHHHHHHHHHhh----cCCcEEEEeecCCC-----CHHHHHHHHhcCCcE
Q 020013 21 DISGPELVAAVANAGGLGLLRAP-DWEAPDYLRDLIRKTRSL----TERPFGVGVVLAFP-----HNENIKAILSEKVAV 90 (332)
Q Consensus 21 g~s~~~la~avs~aGglG~i~~~-~~~~~e~~~~~i~~~r~~----~~~p~gvnl~~~~~-----~~~~~~~~~~~~~~~ 90 (332)
...+++....+.++| +.++..- +..+.++.++.++.+|+. .++|+.+.+-...| +.+.++.+.+.++|+
T Consensus 30 as~~~e~l~~li~aG-~dv~RlN~SHg~~~~h~~~i~~iR~~~e~~~G~~v~i~~dl~~p~ltekD~~di~~a~~~~vD~ 108 (265)
T d1a3xa2 30 KTNNPETLVALRKAG-LNIVRMNFSHGSYEYHKSVIDNARKSEELYPGRPLAIALDTKGPALSEKDKEDLRFGVKNGVHM 108 (265)
T ss_dssp TTCSHHHHHHHHHHT-EEEEEEETTSCCHHHHHHHHHHHHHHHHHCCCSCCBCEEECCCCSSCHHHHHHHHHHHHTTCCE
T ss_pred CCCCHHHHHHHHHcC-CCEEEEECCCCCHHHHHHHHHHHHHHhhhccCCceeeeccccchhcccchHHHHHHhhhcccce
Confidence 356899999999987 3443220 124677777777777753 34666555443333 244577888999999
Q ss_pred EEEccCCCcHHHHHHHHh------CCCEEEEecCCHHHHHHHHH--cCCCEEEEecCCCCcccCCCCchhhhHHH----H
Q 020013 91 LQVSWGEYSEELVLEAHS------AGVKVVPQVGSFDEARKAVN--AGVDAIIVQGREAGGHVIGQDGLISLLPM----V 158 (332)
Q Consensus 91 I~~~~g~~~~~~i~~~~~------~g~~v~~~v~s~~~a~~a~~--~g~D~ivv~G~eaGGh~~~~~~~~~ll~~----i 158 (332)
|.++|=. ..+-++.+++ ..++++.++-+.+-.....+ .-+|+|.+.=.+-|=+. + +.-+|. +
T Consensus 109 ialSFVr-s~~Di~~~r~~l~~~~~~~~IiaKIE~~~al~NldeIi~~sDgimIaRGDLgvei-~----~e~vp~~Qk~I 182 (265)
T d1a3xa2 109 VFASFIR-TANDVLTIREVLGEQGKDVKIIVKIENQQGVNNFDEILKVTDGVMVARGDLGIEI-P----APEVLAVQKKL 182 (265)
T ss_dssp ECCTTCC-SHHHHHHHHHHHCGGGTTSCCEEEECSHHHHTTHHHHHHHCSEEEEEHHHHHHHS-C----HHHHHHHHHHH
T ss_pred EeeccCC-CHHHHHHHHHHHHHhcCCCeEEeeccchHHHhChHHHHhhcceeEEEccchhhhc-c----HHHHHHHHHHH
Confidence 9998744 3333444432 36789998887654433221 23788888321111121 1 222222 2
Q ss_pred HHHhCCCCCcEEeecCcC------------CHHHHHHHHHcCcceeeec
Q 020013 159 VDLIGDRDIPIIAAGGIV------------DARGYVAALSLGAQGICLG 195 (332)
Q Consensus 159 ~~~~~~~~iPviaaGGI~------------~~~~v~~al~~GA~gV~~G 195 (332)
.......+.|||.+.-+- .-.|++.++..|+|+|++.
T Consensus 183 i~~~~~~gkpvivATq~LeSM~~~~~PTRAEv~Dvanav~dG~D~vmLs 231 (265)
T d1a3xa2 183 IAKSNLAGKPVICATQMLESMTYNPRPTRAEVSDVGNAILDGADCVMLS 231 (265)
T ss_dssp HHHHHHHTCCEEEESSSSGGGGTCSSCCHHHHHHHHHHHHTTCSEECCS
T ss_pred HHHHHHcCCcEEehhhhhhhhccCCCCcHHHHHHHHHHHHhCCCEEEEc
Confidence 222111268999888552 2356778888999999873
|
| >d2pl1a1 c.23.1.1 (A:1-119) PhoP receiver domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Flavodoxin-like superfamily: CheY-like family: CheY-related domain: PhoP receiver domain species: Escherichia coli [TaxId: 562]
Probab=94.59 E-value=0.23 Score=36.33 Aligned_cols=83 Identities=20% Similarity=0.115 Sum_probs=61.4
Q ss_pred HHHHHhCCCEEEEecCCHHHHHHHH-HcCCCEEEEecCCCCcccCCCCchhhhHHHHHHHhCCCCCcEEeecCcCCHHHH
Q 020013 103 VLEAHSAGVKVVPQVGSFDEARKAV-NAGVDAIIVQGREAGGHVIGQDGLISLLPMVVDLIGDRDIPIIAAGGIVDARGY 181 (332)
Q Consensus 103 i~~~~~~g~~v~~~v~s~~~a~~a~-~~g~D~ivv~G~eaGGh~~~~~~~~~ll~~i~~~~~~~~iPviaaGGI~~~~~v 181 (332)
.+.++..|..|. .+.+.++|.... +..+|.|+++=.- .....+.+++++++... ++|+|.-.+-.+.++.
T Consensus 17 ~~~L~~~G~~v~-~a~~g~eal~~l~~~~~dliilD~~m------P~~~G~e~~~~i~~~~~--~~pvi~lt~~~~~~~~ 87 (119)
T d2pl1a1 17 KVQIQDAGHQVD-DAEDAKEADYYLNEHIPDIAIVDLGL------PDEDGLSLIRRWRSNDV--SLPILVLTARESWQDK 87 (119)
T ss_dssp HHHHHHTTCEEE-EESSHHHHHHHHHHSCCSEEEECSCC------SSSCHHHHHHHHHHTTC--CSCEEEEESCCCHHHH
T ss_pred HHHHHHCCCEEE-EECCHHHHHHHHHhcccceeehhccC------CCchhHHHHHHHHhcCc--ccceEeeeccCCHHHH
Confidence 344667788866 677888887655 4578999985321 11233778888877543 7999999999999999
Q ss_pred HHHHHcCcceeee
Q 020013 182 VAALSLGAQGICL 194 (332)
Q Consensus 182 ~~al~~GA~gV~~ 194 (332)
.+++.+||++...
T Consensus 88 ~~a~~~Ga~~yl~ 100 (119)
T d2pl1a1 88 VEVLSAGADDYVT 100 (119)
T ss_dssp HHHHHTTCSEEEE
T ss_pred HHHHHcCCCEEEE
Confidence 9999999998653
|
| >d1vc4a_ c.1.2.4 (A:) Indole-3-glycerophosphate synthase, IPGS {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Ribulose-phoshate binding barrel family: Tryptophan biosynthesis enzymes domain: Indole-3-glycerophosphate synthase, IPGS species: Thermus thermophilus [TaxId: 274]
Probab=94.58 E-value=0.072 Score=44.89 Aligned_cols=71 Identities=23% Similarity=0.281 Sum_probs=56.8
Q ss_pred CHHHHHHHHHcCCCEEEEec--CCCCcccCCCCchhhhHHHHHHHhCCCCCcEEeecCcCCHHHHHHHHHcCcceeeecc
Q 020013 119 SFDEARKAVNAGVDAIIVQG--REAGGHVIGQDGLISLLPMVVDLIGDRDIPIIAAGGIVDARGYVAALSLGAQGICLGT 196 (332)
Q Consensus 119 s~~~a~~a~~~g~D~ivv~G--~eaGGh~~~~~~~~~ll~~i~~~~~~~~iPviaaGGI~~~~~v~~al~~GA~gV~~GT 196 (332)
..+.|+..++.|+++|-|-- .-.+|+ +..+..+++.+ ++||+.=-=|-|+.++.++..+|||+|.+-.
T Consensus 67 p~~~A~~y~~~GA~aiSVLTe~~~F~Gs-------~~dl~~v~~~~---~iPvLrKDFIid~~QI~ea~~~GADaVLLIa 136 (254)
T d1vc4a_ 67 PVEAALAYARGGARAVSVLTEPHRFGGS-------LLDLKRVREAV---DLPLLRKDFVVDPFMLEEARAFGASAALLIV 136 (254)
T ss_dssp HHHHHHHHHHTTCSEEEEECCCSSSCCC-------HHHHHHHHHHC---CSCEEEESCCCSHHHHHHHHHTTCSEEEEEH
T ss_pred HHHHHHHHHhcCCceEEEEcCccccccc-------HHHHHHHHHHc---CCCcccCCccccHHHHHHHHhccchHHHHHH
Confidence 35667777889999998732 223333 56677888777 7999999999999999999999999999988
Q ss_pred ccc
Q 020013 197 RFV 199 (332)
Q Consensus 197 ~fl 199 (332)
+++
T Consensus 137 all 139 (254)
T d1vc4a_ 137 ALL 139 (254)
T ss_dssp HHH
T ss_pred HHH
Confidence 764
|
| >d1jr1a1 c.1.5.1 (A:17-112,A:233-514) Inosine monophosphate dehydrogenase (IMPDH) {Chinese hamster (Cricetulus griseus) [TaxId: 10029]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Inosine monophosphate dehydrogenase (IMPDH) family: Inosine monophosphate dehydrogenase (IMPDH) domain: Inosine monophosphate dehydrogenase (IMPDH) species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]
Probab=94.55 E-value=0.035 Score=49.86 Aligned_cols=68 Identities=18% Similarity=0.301 Sum_probs=49.3
Q ss_pred HHHHHHHcCCCEEEEecCCCCcccCCCCchhhhHHHHHHHhCCCCCcEEeecCcCCHHHHHHHHHcCcceeeeccc
Q 020013 122 EARKAVNAGVDAIIVQGREAGGHVIGQDGLISLLPMVVDLIGDRDIPIIAAGGIVDARGYVAALSLGAQGICLGTR 197 (332)
Q Consensus 122 ~a~~a~~~g~D~ivv~G~eaGGh~~~~~~~~~ll~~i~~~~~~~~iPviaaGGI~~~~~v~~al~~GA~gV~~GT~ 197 (332)
.+....++|+|+++++.. -||. ......++.+++..+ ++||| +|.+.|++.+..++.+|||+|.+|-.
T Consensus 123 ~~~~l~~agv~vi~id~a--~g~~---~~~~~~i~~ik~~~~--~~~iI-aGnVaT~e~a~~L~~aGAD~VkVGiG 190 (378)
T d1jr1a1 123 RLDLLALAGVDVVVLDSS--QGNS---IFQINMIKYMKEKYP--NLQVI-GGNVVTAAQAKNLIDAGVDALRVGMG 190 (378)
T ss_dssp HHHHHHHHTCCEEEECCS--SCCS---HHHHHHHHHHHHHST--TCEEE-EEEECSHHHHHHHHHHTCSEEEECSS
T ss_pred HHHHHHhhccceEeeecc--Cccc---hhhHHHHHHHHHHCC--CCcee-ecccccHHHHHHHHHhCCCEEeeccc
Confidence 345567799999999765 2232 234556666666553 56665 79999999999999999999988643
|
| >d1pkla2 c.1.12.1 (A:1-87,A:187-357) Pyruvate kinase, N-terminal domain {Leishmania mexicana [TaxId: 5665]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Phosphoenolpyruvate/pyruvate domain family: Pyruvate kinase domain: Pyruvate kinase, N-terminal domain species: Leishmania mexicana [TaxId: 5665]
Probab=94.54 E-value=0.33 Score=40.78 Aligned_cols=172 Identities=15% Similarity=0.216 Sum_probs=99.4
Q ss_pred CCCCCCCcHHHHHHHHhCCCceeecC-CCCCCHHHHHHHHHHHHhh---cCCcEEEEeecCCC------CHHHHHHHHhc
Q 020013 17 PLGPDISGPELVAAVANAGGLGLLRA-PDWEAPDYLRDLIRKTRSL---TERPFGVGVVLAFP------HNENIKAILSE 86 (332)
Q Consensus 17 pM~~g~s~~~la~avs~aGglG~i~~-~~~~~~e~~~~~i~~~r~~---~~~p~gvnl~~~~~------~~~~~~~~~~~ 86 (332)
-+++...+++....+.++| +.++.. -...+.+...+.++.+|+. .++|+++-+-...+ +...++.+.+.
T Consensus 26 TiGPas~~~~~l~~li~aG-vdv~RiN~SHg~~e~~~~~i~~iR~~~~~~g~~v~i~~d~~gp~~~t~kd~~di~~a~~~ 104 (258)
T d1pkla2 26 TIGPSTQSVEALKGLIQSG-MSVARMNFSHGSHEYHQTTINNVRQAAAELGVNIAIALDTKGPPAVSAKDRVDLQFGVEQ 104 (258)
T ss_dssp ECCGGGCSHHHHHHHHHHT-EEEEEEETTSSCHHHHHHHHHHHHHHHHHTTCCCEEEEECCCCCSSCHHHHHHHHHHHHH
T ss_pred eeCCCcCCHHHHHHHHHcC-CCEEEEECCCCCHHHHHHHHHHHHHHHHHhCCCccccccccccccccccHHHHHHHHHhc
Confidence 3333356899999998887 333321 0124778778888877764 45555543222111 23457778899
Q ss_pred CCcEEEEccCCCcHHHHHHHHh------CCCEEEEecCCHHHHHHHHH--cCCCEEEEecCCCCcccCCCCchhhhHHHH
Q 020013 87 KVAVLQVSWGEYSEELVLEAHS------AGVKVVPQVGSFDEARKAVN--AGVDAIIVQGREAGGHVIGQDGLISLLPMV 158 (332)
Q Consensus 87 ~~~~I~~~~g~~~~~~i~~~~~------~g~~v~~~v~s~~~a~~a~~--~g~D~ivv~G~eaGGh~~~~~~~~~ll~~i 158 (332)
++|+|.++|=. ..+-++.+++ ..++++.++.+.+-.....+ .-+|+|.+.=.+.|=. ..+.-+|.+
T Consensus 105 ~vD~ialSFVr-s~~Dv~~ir~~l~~~~~~~~iiaKIE~~~al~nldeI~~~sDgImIaRGDLg~e-----i~~e~vp~~ 178 (258)
T d1pkla2 105 GVDMIFASFIR-SAEQVGDVRKALGPKGRDIMIICKIENHQGVQNIDSIIEESDGIMVARGDLGVE-----IPAEKVVVA 178 (258)
T ss_dssp TCSEEEETTCC-SHHHHHHHHHHHCGGGTTSEEEEEECSHHHHHTHHHHHHHSSEEEECHHHHTTT-----SCHHHHHHH
T ss_pred CCCeEEEeCCC-CHHHHHHHHHHHHHcCCCCceEEEecCchhhhhhhhHHhhCCeeeEechhhhhh-----cchhhhhhH
Confidence 99999998754 3333333332 35789999987765543322 2478998831111111 112223322
Q ss_pred ----HHHhCCCCCcEEeecCcC------------CHHHHHHHHHcCcceeeec
Q 020013 159 ----VDLIGDRDIPIIAAGGIV------------DARGYVAALSLGAQGICLG 195 (332)
Q Consensus 159 ----~~~~~~~~iPviaaGGI~------------~~~~v~~al~~GA~gV~~G 195 (332)
.......+.|||.|.-+- .-.|++-++.-|+|+|++.
T Consensus 179 Qk~Ii~~~~~~~kpvivATq~LeSM~~~~~PTRAEv~Dvanav~dG~D~imLs 231 (258)
T d1pkla2 179 QKILISKCNVAGKPVICATQMLESMTYNPRPTRAEVSDVANAVFNGADCVMLS 231 (258)
T ss_dssp HHHHHHHHHHHTCCEEECSSSSGGGGTSSSCCHHHHHHHHHHHHHTCSEEEES
T ss_pred HHHHHHHHHHcCCCEEEEeceeHhhccCCCCCHHHHHHHHHHHHhCCCEEEEc
Confidence 111111268999987442 1356788888999999874
|
| >d1peya_ c.23.1.1 (A:) Sporulation response regulator Spo0F {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Flavodoxin-like superfamily: CheY-like family: CheY-related domain: Sporulation response regulator Spo0F species: Bacillus subtilis [TaxId: 1423]
Probab=94.41 E-value=0.26 Score=36.02 Aligned_cols=81 Identities=16% Similarity=0.084 Sum_probs=59.9
Q ss_pred HHHHhCCCEEEEecCCHHHHHHHH-HcCCCEEEEecCCCCcccCCCCchhhhHHHHHHHhCCCCCcEEeecCcCCHHHHH
Q 020013 104 LEAHSAGVKVVPQVGSFDEARKAV-NAGVDAIIVQGREAGGHVIGQDGLISLLPMVVDLIGDRDIPIIAAGGIVDARGYV 182 (332)
Q Consensus 104 ~~~~~~g~~v~~~v~s~~~a~~a~-~~g~D~ivv~G~eaGGh~~~~~~~~~ll~~i~~~~~~~~iPviaaGGI~~~~~v~ 182 (332)
+.+...|..+. .+.+.++|.... +..+|.|++.-.--| ...+.+++++++..+ ++|||.--|-.+.+...
T Consensus 19 ~~L~~~g~~v~-~a~~g~eal~~~~~~~~dlillD~~mP~------~~G~el~~~lr~~~~--~~pvi~lt~~~~~~~~~ 89 (119)
T d1peya_ 19 EVFNKEGYQTF-QAANGLQALDIVTKERPDLVLLDMKIPG------MDGIEILKRMKVIDE--NIRVIIMTAYGELDMIQ 89 (119)
T ss_dssp HHHHHTTCEEE-EESSHHHHHHHHHHHCCSEEEEESCCTT------CCHHHHHHHHHHHCT--TCEEEEEESSCCHHHHH
T ss_pred HHHHHcCCEEE-EeCCHHHHHHHHHhCCCCEEEEeccCCC------CCHHHHHHHHHHhCC--CCcEEEEecCCCHHHHH
Confidence 44566788876 567787776544 557999998643211 234778888876543 79999999999999999
Q ss_pred HHHHcCcceee
Q 020013 183 AALSLGAQGIC 193 (332)
Q Consensus 183 ~al~~GA~gV~ 193 (332)
+++.+||++..
T Consensus 90 ~a~~~Ga~~yl 100 (119)
T d1peya_ 90 ESKELGALTHF 100 (119)
T ss_dssp HHHHTTCCEEE
T ss_pred HHHHCCCCEEE
Confidence 99999999865
|
| >d1xkya1 c.1.10.1 (A:1-292) Dihydrodipicolinate synthase {Bacillus anthracis [TaxId: 1392]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Aldolase family: Class I aldolase domain: Dihydrodipicolinate synthase species: Bacillus anthracis [TaxId: 1392]
Probab=94.37 E-value=0.064 Score=45.99 Aligned_cols=123 Identities=15% Similarity=0.268 Sum_probs=69.8
Q ss_pred HHHHHHHHcCCCEEEEecCCCCcccCCCCchhhhHHHHHHHhCCCCCcEEeecCcCCHHHH----HHHHHcCcceeeecc
Q 020013 121 DEARKAVNAGVDAIIVQGREAGGHVIGQDGLISLLPMVVDLIGDRDIPIIAAGGIVDARGY----VAALSLGAQGICLGT 196 (332)
Q Consensus 121 ~~a~~a~~~g~D~ivv~G~eaGGh~~~~~~~~~ll~~i~~~~~~~~iPviaaGGI~~~~~v----~~al~~GA~gV~~GT 196 (332)
+.++...+.|+|+|++-|..+-++.-+...-..++..+++.... ++|||+.-|=.+.+++ ..+.++|||++++..
T Consensus 28 ~~i~~l~~~Gv~gl~~~G~tGE~~~Ls~~Er~~l~~~~~~~~~~-~~~vi~gv~~~s~~~~i~~a~~a~~~Gad~ilv~p 106 (292)
T d1xkya1 28 KLVNYLIDNGTTAIVVGGTTGESPTLTSEEKVALYRHVVSVVDK-RVPVIAGTGSNNTHASIDLTKKATEVGVDAVMLVA 106 (292)
T ss_dssp HHHHHHHHTTCCEEEESSTTTTGGGSCHHHHHHHHHHHHHHHTT-SSCEEEECCCSCHHHHHHHHHHHHHTTCSEEEEEC
T ss_pred HHHHHHHHCCCCEEEECeEccchhhCCHHHHHHHHHHHHHHhCC-CceEEEecCcccHHHHHHHHHHHHHcCCCEEEECC
Confidence 34566778999999996554333332222235566667766643 6898876654455554 345569999999998
Q ss_pred ccccCc-cCCCCHHHHHHHhcCCCceEEEEecccCCCCCCceeecChHHHhhhc
Q 020013 197 RFVASE-ESYAHPEYKRKLVEMDKTEYTDVFGRARWPGAPHRVLQTPFFSNWKN 249 (332)
Q Consensus 197 ~fl~t~-Es~~~~~~k~~~~~~~~t~~t~~~~~~~~~g~~~R~l~n~~~~~~~~ 249 (332)
.+.... +...-+-|+ .+.++.+..+ .++.. |....+.+...+..++.+
T Consensus 107 P~~~~~s~~~i~~~~~-~v~~~~~~pi-~iYn~---P~~~~~~~~~~~~~~l~~ 155 (292)
T d1xkya1 107 PYYNKPSQEGMYQHFK-AIAESTPLPV-MLYNV---PGRSIVQISVDTVVRLSE 155 (292)
T ss_dssp CCSSCCCHHHHHHHHH-HHHHTCSSCE-EEEEC---HHHHSSCCCHHHHHHHHT
T ss_pred CCCCCCCHHHHHHHHH-HHhccCCCcE-EEEeC---CcccCCccCHHHHhhhcc
Confidence 765532 222333334 4444544432 34432 333334566666666544
|
| >d1krwa_ c.23.1.1 (A:) NTRC receiver domain {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Flavodoxin-like superfamily: CheY-like family: CheY-related domain: NTRC receiver domain species: Salmonella typhimurium [TaxId: 90371]
Probab=94.23 E-value=0.23 Score=36.50 Aligned_cols=81 Identities=20% Similarity=0.169 Sum_probs=59.6
Q ss_pred HHHHhCCCEEEEecCCHHHHHHHH-HcCCCEEEEecCCCCcccCCCCchhhhHHHHHHHhCCCCCcEEeecCcCCHHHHH
Q 020013 104 LEAHSAGVKVVPQVGSFDEARKAV-NAGVDAIIVQGREAGGHVIGQDGLISLLPMVVDLIGDRDIPIIAAGGIVDARGYV 182 (332)
Q Consensus 104 ~~~~~~g~~v~~~v~s~~~a~~a~-~~g~D~ivv~G~eaGGh~~~~~~~~~ll~~i~~~~~~~~iPviaaGGI~~~~~v~ 182 (332)
+.+++.|..+. .+.+.++|.... +..+|.|+++=.- .+ ...+.++.++++..+ ++|||.-.|-.+.++..
T Consensus 21 ~~L~~~g~~v~-~a~~~~~a~~~l~~~~~dlii~D~~m-p~-----~~G~el~~~l~~~~~--~~piI~~t~~~~~~~~~ 91 (123)
T d1krwa_ 21 RALAGAGLTCT-TFENGNEVLAALASKTPDVLLSDIRM-PG-----MDGLALLKQIKQRHP--MLPVIIMTAHSDLDAAV 91 (123)
T ss_dssp HHHHHTTCEEE-EESSSHHHHHHHTTCCCSEEEECCSS-SS-----STTHHHHHHHHHHSS--SCCEEESCCCSCHHHHH
T ss_pred HHHHHCCCEEE-EeCCHHHHHHHHHhCCCCEEEehhhc-CC-----chHHHHHHHHHHhCC--CCeEEEEecCCCHHHHH
Confidence 44566788876 467777777665 4579999985221 11 123678888877643 79999999999999999
Q ss_pred HHHHcCcceee
Q 020013 183 AALSLGAQGIC 193 (332)
Q Consensus 183 ~al~~GA~gV~ 193 (332)
+++.+||+...
T Consensus 92 ~a~~~Ga~dyl 102 (123)
T d1krwa_ 92 SAYQQGAFDYL 102 (123)
T ss_dssp HHHHHTEEEEC
T ss_pred HHHHcCCCeEE
Confidence 99999998754
|
| >d1izca_ c.1.12.5 (A:) Macrophomate synthase {Macrophoma commelinae [TaxId: 108330]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Phosphoenolpyruvate/pyruvate domain family: HpcH/HpaI aldolase domain: Macrophomate synthase species: Macrophoma commelinae [TaxId: 108330]
Probab=94.22 E-value=1.4 Score=37.55 Aligned_cols=172 Identities=15% Similarity=0.159 Sum_probs=101.8
Q ss_pred CCCcHHHHHHHHhCCCcee-ecCC-CCCCHHHHHHHHHHHHhhcC--CcEEEEeecCCCCHHHHHHHHhcCCcEEEEccC
Q 020013 21 DISGPELVAAVANAGGLGL-LRAP-DWEAPDYLRDLIRKTRSLTE--RPFGVGVVLAFPHNENIKAILSEKVAVLQVSWG 96 (332)
Q Consensus 21 g~s~~~la~avs~aGglG~-i~~~-~~~~~e~~~~~i~~~r~~~~--~p~gvnl~~~~~~~~~~~~~~~~~~~~I~~~~g 96 (332)
+++++..+..++.+|.=-+ |-.. +..+.+.+...++.++.... .+.-|- ++..+...+..+++.|++.|.+..=
T Consensus 48 ~~~s~~~~e~~a~~g~D~v~iD~EHg~~~~~~~~~~i~a~~~~~~~~~~~iVR--vp~~~~~~I~~~LD~Ga~GIivP~V 125 (299)
T d1izca_ 48 GIPSTFVTKVLAATKPDFVWIDVEHGMFNRLELHDAIHAAQHHSEGRSLVIVR--VPKHDEVSLSTALDAGAAGIVIPHV 125 (299)
T ss_dssp CSCCHHHHHHHHHTCCSEEEEETTTSCCCHHHHHHHHHHHHHHTTTCSEEEEE--CCTTCHHHHHHHHHHTCSEEEETTC
T ss_pred cCCCHHHHHHHHcCCCCEEEEcCCCCCCCHHHHHHHHHHHHHhCCCCCCeEEe--CCCCChHHHHHHHHhCcCeeecccc
Confidence 5789999998888874222 2222 13577788888888765432 222233 2334567788899999999988642
Q ss_pred CCcHHHHHHHHh--------------------------------------CCCEEEEecCCHHHHHHHHH----cCCCEE
Q 020013 97 EYSEELVLEAHS--------------------------------------AGVKVVPQVGSFDEARKAVN----AGVDAI 134 (332)
Q Consensus 97 ~~~~~~i~~~~~--------------------------------------~g~~v~~~v~s~~~a~~a~~----~g~D~i 134 (332)
. ..+.++.+.+ ..+.++.++-|.+-...+.+ .|+|+|
T Consensus 126 ~-s~eea~~~v~~~rypP~G~Rg~~~~~~~~g~~~~~~~~~~~~y~~~~n~~~~vi~qIEt~~av~nldeI~av~GVD~i 204 (299)
T d1izca_ 126 E-TVEEVREFVKEMYYGPIGRRSFSPWTFSPGIADASLFPNDPYNVATSNNHVCIIPQIESVKGVENVDAIAAMPEIHGL 204 (299)
T ss_dssp C-CHHHHHHHHHHHSCTTTCCCCCCSTTCBTTTBCCCSSTTCTTCHHHHHHHCEEEEEECSHHHHHTHHHHHTCTTCCCE
T ss_pred c-cHHHHHHHHHhhhhccCCCccccccccccccccccccccchhHHhhhcccceeeeecCCHHHHHHHHHHhccccccEE
Confidence 2 3333332211 11346777877665443332 489999
Q ss_pred EEecC--------CCCcccCC--CCchhhhHHHHHHHhCCCCCcEEeecCcCCHHHHHHHHHcCcceeeeccc
Q 020013 135 IVQGR--------EAGGHVIG--QDGLISLLPMVVDLIGDRDIPIIAAGGIVDARGYVAALSLGAQGICLGTR 197 (332)
Q Consensus 135 vv~G~--------eaGGh~~~--~~~~~~ll~~i~~~~~~~~iPviaaGGI~~~~~v~~al~~GA~gV~~GT~ 197 (332)
.+-.. ...++.+. .......+.++.+..+..++|+. ++..+++++..++..|+..+.+|+-
T Consensus 205 fiGp~DLs~slG~~~~~~~g~~~~p~v~~ai~~i~~a~k~~Gk~~g--~~~~~~~~~~~~~~~G~~~i~~g~D 275 (299)
T d1izca_ 205 MFGPGDYMIDAGLDLNGALSGVPHPTFVEAMTKFSTAAQRNGVPIF--GGALSVDMVPSLIEQGYRAIAVQFD 275 (299)
T ss_dssp EECHHHHHHHTTCCTTCCTTSCCCHHHHHHHHHHHHHHHHTTCCEE--EECSSGGGHHHHHHTTEEEEEEEEH
T ss_pred EEcchHHHhhcCCCcccccccccHHHHHHHHHHHHHHHHHcCCcEE--eccCCHHHHHHHHHcCCCEEEEhHH
Confidence 88221 11122211 11234455555555443367753 3445889999999999999999864
|
| >d1mb3a_ c.23.1.1 (A:) Cell division response regulator DivK {Caulobacter crescentus [TaxId: 155892]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Flavodoxin-like superfamily: CheY-like family: CheY-related domain: Cell division response regulator DivK species: Caulobacter crescentus [TaxId: 155892]
Probab=94.04 E-value=0.19 Score=36.87 Aligned_cols=84 Identities=11% Similarity=-0.022 Sum_probs=55.1
Q ss_pred HHHHHhCCCEEEEecCCHHHHHHHH-HcCCCEEEEecCCCCcccCCCCchhhhHHHHHHHhCCCCCcEEeecCcCCHHHH
Q 020013 103 VLEAHSAGVKVVPQVGSFDEARKAV-NAGVDAIIVQGREAGGHVIGQDGLISLLPMVVDLIGDRDIPIIAAGGIVDARGY 181 (332)
Q Consensus 103 i~~~~~~g~~v~~~v~s~~~a~~a~-~~g~D~ivv~G~eaGGh~~~~~~~~~ll~~i~~~~~~~~iPviaaGGI~~~~~v 181 (332)
.+.++..|..+. .+.+.++|.... +..+|.|++.-.- .....+.++.++++.-...++|||+-.+..+..+.
T Consensus 18 ~~~L~~~g~~v~-~a~~~~~al~~~~~~~~dlil~D~~m------p~~dG~el~~~ir~~~~~~~iPii~lt~~~~~~~~ 90 (123)
T d1mb3a_ 18 HDLLEAQGYETL-QTREGLSALSIARENKPDLILMDIQL------PEISGLEVTKWLKEDDDLAHIPVVAVTAFAMKGDE 90 (123)
T ss_dssp HHHHHHTTCEEE-EESCHHHHHHHHHHHCCSEEEEESBC------SSSBHHHHHHHHHHSTTTTTSCEEEEC------CH
T ss_pred HHHHHHCCCEEE-EECCHHHHHHHHHhCCCCEEEEEecc------CCCcHHHHHHHHHhCCCcCCCCeEEEEEecCHHHH
Confidence 344567888876 567777776544 5689999986321 11234778888876433237899998888888999
Q ss_pred HHHHHcCcceee
Q 020013 182 VAALSLGAQGIC 193 (332)
Q Consensus 182 ~~al~~GA~gV~ 193 (332)
.+++.+||++..
T Consensus 91 ~~~~~~G~~~~l 102 (123)
T d1mb3a_ 91 ERIREGGCEAYI 102 (123)
T ss_dssp HHHHHHTCSEEE
T ss_pred HHHHHcCCCEEE
Confidence 999999999864
|
| >d1s8na_ c.23.1.1 (A:) Probable two-component system transcriptional regulator Rv1626 {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Flavodoxin-like superfamily: CheY-like family: CheY-related domain: Probable two-component system transcriptional regulator Rv1626 species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=93.94 E-value=0.12 Score=41.13 Aligned_cols=83 Identities=16% Similarity=0.091 Sum_probs=63.7
Q ss_pred HHHHHhCCCEEEEecCCHHHHHHHH-HcCCCEEEEecCCCCcccCCCCchhhhHHHHHHHhCCCCCcEEeecCcCCHHHH
Q 020013 103 VLEAHSAGVKVVPQVGSFDEARKAV-NAGVDAIIVQGREAGGHVIGQDGLISLLPMVVDLIGDRDIPIIAAGGIVDARGY 181 (332)
Q Consensus 103 i~~~~~~g~~v~~~v~s~~~a~~a~-~~g~D~ivv~G~eaGGh~~~~~~~~~ll~~i~~~~~~~~iPviaaGGI~~~~~v 181 (332)
...+++.|..++..+++.++|.... ...+|.|+++=.- +....+.+++++++.. ++||+.--+-.+.+.+
T Consensus 20 ~~~L~~~g~~vv~~a~~g~eal~~~~~~~pDlvllDi~m------P~~dG~e~~~~ir~~~---~~pIi~lTa~~~~~~~ 90 (190)
T d1s8na_ 20 AEMLREEGYEIVGEAGDGQEAVELAELHKPDLVIMDVKM------PRRDGIDAASEIASKR---IAPIVVLTAFSQRDLV 90 (190)
T ss_dssp HHHHHHTTCEEEEEESSHHHHHHHHHHHCCSEEEEESSC------SSSCHHHHHHHHHHTT---CSCEEEEEEGGGHHHH
T ss_pred HHHHHHCCCEEEEEECCHHHHHHHHhcCCCCEEEEeccc------cCcchHHHHHHHHhcC---CCCEEEEeCCCCHHHH
Confidence 3446678999988899988887654 5689999985321 1123477888887653 6999999999899999
Q ss_pred HHHHHcCcceeee
Q 020013 182 VAALSLGAQGICL 194 (332)
Q Consensus 182 ~~al~~GA~gV~~ 194 (332)
.+++.+||++...
T Consensus 91 ~~al~~Ga~~yl~ 103 (190)
T d1s8na_ 91 ERARDAGAMAYLV 103 (190)
T ss_dssp HTTGGGSCEEEEE
T ss_pred HHHHHcCCCEecc
Confidence 9999999998875
|
| >d2a9pa1 c.23.1.1 (A:2-118) DNA-binding response regulator MicA, N-terminal domain {Streptococcus pneumoniae [TaxId: 1313]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Flavodoxin-like superfamily: CheY-like family: CheY-related domain: DNA-binding response regulator MicA, N-terminal domain species: Streptococcus pneumoniae [TaxId: 1313]
Probab=93.92 E-value=0.26 Score=35.92 Aligned_cols=81 Identities=19% Similarity=0.129 Sum_probs=59.1
Q ss_pred HHHHhCCCEEEEecCCHHHHHHH-HHcCCCEEEEecCCCCcccCCCCchhhhHHHHHHHhCCCCCcEEeecCcCCHHHHH
Q 020013 104 LEAHSAGVKVVPQVGSFDEARKA-VNAGVDAIIVQGREAGGHVIGQDGLISLLPMVVDLIGDRDIPIIAAGGIVDARGYV 182 (332)
Q Consensus 104 ~~~~~~g~~v~~~v~s~~~a~~a-~~~g~D~ivv~G~eaGGh~~~~~~~~~ll~~i~~~~~~~~iPviaaGGI~~~~~v~ 182 (332)
+.+++.|..|. .+.+.++|... .+..+|.|++.=.- .....+.++.++++.. ++|||+-.+-.+.++..
T Consensus 18 ~~L~~~g~~v~-~a~~~~eal~~~~~~~~dlillD~~m------p~~~G~~~~~~i~~~~---~~pvI~lt~~~~~~~~~ 87 (117)
T d2a9pa1 18 FNMTKEGYEVV-TAFNGREALEQFEAEQPDIIILDLML------PEIDGLEVAKTIRKTS---SVPILMLSAKDSEFDKV 87 (117)
T ss_dssp HHHHHTTCEEE-EESSHHHHHHHHHHHCCSEEEECSSC------SSSCHHHHHHHHHTTC---CCCEEEEESCCSHHHHH
T ss_pred HHHHHCCCEEE-EECCHHHHHHHHHhcCCCEEEecccc------CCCCccHHHHHHHhCC---CCCEEEEecCCCHHHHH
Confidence 45667888876 67788887654 45689999985221 1123367788877643 79999988888999999
Q ss_pred HHHHcCcceeee
Q 020013 183 AALSLGAQGICL 194 (332)
Q Consensus 183 ~al~~GA~gV~~ 194 (332)
+++.+||++...
T Consensus 88 ~a~~~Ga~d~l~ 99 (117)
T d2a9pa1 88 IGLELGADDYVT 99 (117)
T ss_dssp HHHHHTCSEEEE
T ss_pred HHHHcCCCEEEE
Confidence 999999998653
|
| >d1p6qa_ c.23.1.1 (A:) CheY protein {Sinorhizobium meliloti, CheY2 [TaxId: 382]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Flavodoxin-like superfamily: CheY-like family: CheY-related domain: CheY protein species: Sinorhizobium meliloti, CheY2 [TaxId: 382]
Probab=93.88 E-value=0.16 Score=37.89 Aligned_cols=84 Identities=17% Similarity=0.096 Sum_probs=60.4
Q ss_pred HHHHhCCCEEEEecCCHHHHHHHHH-cCCCEEEEecCCCCcccCCCCchhhhHHHHHHHhCCCCCcEEeecCcCCHHHHH
Q 020013 104 LEAHSAGVKVVPQVGSFDEARKAVN-AGVDAIIVQGREAGGHVIGQDGLISLLPMVVDLIGDRDIPIIAAGGIVDARGYV 182 (332)
Q Consensus 104 ~~~~~~g~~v~~~v~s~~~a~~a~~-~g~D~ivv~G~eaGGh~~~~~~~~~ll~~i~~~~~~~~iPviaaGGI~~~~~v~ 182 (332)
+.+.+.|...+..+.+.++|..... ..+|.|+++-.= .....+.++.++++.....++|||.--+-.+.+...
T Consensus 24 ~~L~~~g~~~v~~a~~~~~al~~l~~~~~dlii~D~~m------P~~~G~el~~~lr~~~~~~~~pii~lt~~~~~~~~~ 97 (129)
T d1p6qa_ 24 DALQQLGFKQITAAGDGEQGMKIMAQNPHHLVISDFNM------PKMDGLGLLQAVRANPATKKAAFIILTAQGDRALVQ 97 (129)
T ss_dssp HHHHTTTCSCEECCSSHHHHHHHHHTSCCSEEEECSSS------CSSCHHHHHHHHTTCTTSTTCEEEECCSCCCHHHHH
T ss_pred HHHHHCCCeEEEEECCHHHHHHHHHhCCCCeEEeeeec------CCCChHHHHHHHHhCcccCCCeEEEEEecCCHHHHH
Confidence 4556678876777888888877664 568999885321 112347788887764322369988888888999999
Q ss_pred HHHHcCcceee
Q 020013 183 AALSLGAQGIC 193 (332)
Q Consensus 183 ~al~~GA~gV~ 193 (332)
+++.+|++...
T Consensus 98 ~a~~~G~~~~l 108 (129)
T d1p6qa_ 98 KAAALGANNVL 108 (129)
T ss_dssp HHHHHTCSCEE
T ss_pred HHHHCCCCEEE
Confidence 99999998755
|
| >d1i3ca_ c.23.1.1 (A:) Response regulator for cyanobacterial phytochrome {Synechocystis sp. PCC 6803, RCP1 [TaxId: 1148]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Flavodoxin-like superfamily: CheY-like family: CheY-related domain: Response regulator for cyanobacterial phytochrome species: Synechocystis sp. PCC 6803, RCP1 [TaxId: 1148]
Probab=93.88 E-value=0.33 Score=36.76 Aligned_cols=83 Identities=8% Similarity=0.013 Sum_probs=58.2
Q ss_pred HHhCCCE-EEEecCCHHHHHHHHHc--------CCCEEEEecCCCCcccCCCCchhhhHHHHHHHhCCCCCcEEeecCcC
Q 020013 106 AHSAGVK-VVPQVGSFDEARKAVNA--------GVDAIIVQGREAGGHVIGQDGLISLLPMVVDLIGDRDIPIIAAGGIV 176 (332)
Q Consensus 106 ~~~~g~~-v~~~v~s~~~a~~a~~~--------g~D~ivv~G~eaGGh~~~~~~~~~ll~~i~~~~~~~~iPviaaGGI~ 176 (332)
+++.|.. -+..+.+.++|...++. .+|.|+++-.- .....+.++.++++.-...++|||.-.+-.
T Consensus 23 L~~~g~~~~v~~a~~g~~Al~~l~~~~~~~~~~~pdlIllD~~m------P~~~G~el~~~ir~~~~~~~iPvi~lT~~~ 96 (144)
T d1i3ca_ 23 LKTSTIDHELIILRDGLAAMAFLQQQGEYENSPRPNLILLDLNL------PKKDGREVLAEIKQNPDLKRIPVVVLTTSH 96 (144)
T ss_dssp HHSCCSCEEEEEECSHHHHHHHHTTCGGGTTCCCCSEEEECSCC------SSSCHHHHHHHHHHCTTTTTSCEEEEESCC
T ss_pred HHHcCCCeEEEEECCHHHHHHHHHhchhhhccCCCCEEEEECcc------ccccchHHHHHHHhCcccCCCeEEEEECCC
Confidence 4455653 24567888888776643 37899885321 112347788888764322369999888888
Q ss_pred CHHHHHHHHHcCcceeee
Q 020013 177 DARGYVAALSLGAQGICL 194 (332)
Q Consensus 177 ~~~~v~~al~~GA~gV~~ 194 (332)
+.++..+++.+||++...
T Consensus 97 ~~~~~~~a~~~Ga~~yl~ 114 (144)
T d1i3ca_ 97 NEDDVIASYELHVNCYLT 114 (144)
T ss_dssp CHHHHHHHHHTTCSEEEE
T ss_pred CHHHHHHHHHCCCCEEEE
Confidence 999999999999998774
|
| >d1ea0a2 c.1.4.1 (A:423-1193) Alpha subunit of glutamate synthase, central and FMN domains {Azospirillum brasilense [TaxId: 192]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: FMN-linked oxidoreductases family: FMN-linked oxidoreductases domain: Alpha subunit of glutamate synthase, central and FMN domains species: Azospirillum brasilense [TaxId: 192]
Probab=93.86 E-value=0.54 Score=45.33 Aligned_cols=113 Identities=14% Similarity=0.108 Sum_probs=76.4
Q ss_pred cHHHHHHHHhCCCceeecCC---CCCCHHHHHHHHHHHHhhc-CCcEEEEeecCCCCHHHHHHHHhcCCcEEEEcc----
Q 020013 24 GPELVAAVANAGGLGLLRAP---DWEAPDYLRDLIRKTRSLT-ERPFGVGVVLAFPHNENIKAILSEKVAVLQVSW---- 95 (332)
Q Consensus 24 ~~~la~avs~aGglG~i~~~---~~~~~e~~~~~i~~~r~~~-~~p~gvnl~~~~~~~~~~~~~~~~~~~~I~~~~---- 95 (332)
+++.|..-.--=|...+..+ ...+++++.+.+.++|+.+ ++|++|.+............+.+.++|+|.+..
T Consensus 528 t~~IA~~R~~~~G~~~iSP~~h~di~siedL~~~I~~Lr~~~~~~pv~vKl~~~~~~~~i~~~v~ka~~D~I~IdG~eGG 607 (771)
T d1ea0a2 528 TEMIARLRHSTPGVMLISPPPHHDIYSIEDLAQLIYDLKQINPDAKVTVKLVSRSGIGTIAAGVAKANADIILISGNSGG 607 (771)
T ss_dssp CHHHHHHHTCCTTCCEECCSSCTTCSSHHHHHHHHHHHHHHCTTCEEEEEEECCTTHHHHHHHHHHTTCSEEEEECTTCC
T ss_pred CHHHHHhcCCCCCCCccCCCCCCCCCCHHHHHHHHHHHHhcCCCCCEEEEECCcCcHHHHHHHHHhcCCCEEEEecCCCc
Confidence 45555533222367777643 2458999999999999876 789999987655444555566788999999852
Q ss_pred ------------CCCcH----HHHHHHHhCC----CEEEE--ecCCHHHHHHHHHcCCCEEEE
Q 020013 96 ------------GEYSE----ELVLEAHSAG----VKVVP--QVGSFDEARKAVNAGVDAIIV 136 (332)
Q Consensus 96 ------------g~~~~----~~i~~~~~~g----~~v~~--~v~s~~~a~~a~~~g~D~ivv 136 (332)
|.|.. +..+.+.+.| ++++. .+.+..++.++...|||.+-+
T Consensus 608 TGAap~~~~d~~GlP~~~~l~~~~~~L~~~glr~~V~l~a~Ggl~t~~Dv~ka~aLGAD~v~~ 670 (771)
T d1ea0a2 608 TGASPQTSIKFAGLPWEMGLSEVHQVLTLNRLRHRVRLRTDGGLKTGRDIVIAAMLGAEEFGI 670 (771)
T ss_dssp CSSEETTHHHHSCCCHHHHHHHHHHHHHTTTCTTTSEEEEESSCCSHHHHHHHHHTTCSEEEC
T ss_pred cccccHHHhhcCCcCHHHHHHHHHHHHHHcCCCCceEEEEeCCCCCHHHHHHHHHhCCCchHH
Confidence 22211 1223344433 66664 467899999999999999865
|
| >d1l6wa_ c.1.10.1 (A:) Decameric fructose-6-phosphate aldolase/transaldolase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Aldolase family: Class I aldolase domain: Decameric fructose-6-phosphate aldolase/transaldolase species: Escherichia coli [TaxId: 562]
Probab=93.84 E-value=0.43 Score=39.08 Aligned_cols=127 Identities=14% Similarity=0.136 Sum_probs=80.4
Q ss_pred CCcEEEEeecCCCCHHHHHH---HHhcCCcE-EEEccCCCcHHHHHHHHhCCCEEEEe-cCCHHHHHHHHHcCCCEEEEe
Q 020013 63 ERPFGVGVVLAFPHNENIKA---ILSEKVAV-LQVSWGEYSEELVLEAHSAGVKVVPQ-VGSFDEARKAVNAGVDAIIVQ 137 (332)
Q Consensus 63 ~~p~gvnl~~~~~~~~~~~~---~~~~~~~~-I~~~~g~~~~~~i~~~~~~g~~v~~~-v~s~~~a~~a~~~g~D~ivv~ 137 (332)
++|+.+.++.... ++.++. +.+.+..+ |-++.-.+--+.++.+.+.|+++-.+ |.|..++..+.++|+++|-..
T Consensus 53 ~~~is~ev~~~~~-~~mi~~A~~l~~~~~nv~IKIP~t~~g~~ai~~L~~~Gi~vn~Tavfs~~Qa~~Aa~aga~yvspy 131 (220)
T d1l6wa_ 53 QGRLFAQVMATTA-EGMVNDALKLRSIIADIVVKVPVTAEGLAAIKMLKAEGIPTLGTAVYGAAQGLLSALAGAEYVAPY 131 (220)
T ss_dssp CSEEEEECCCSSH-HHHHHHHHHHHHHSTTCEEEEECSHHHHHHHHHHHHHTCCEEEEEECSHHHHHHHHHHTCSEEEEB
T ss_pred CCeEEeEEeeehh-hhhHHHHHHHHHhccccEEEeeccccccchhhhhhhcccchhhhhcccHHHHHHhhhcCCcEEeee
Confidence 5678887765332 333333 33334443 33443211235677888889998755 679999999999999999762
Q ss_pred -cC--CCCcccCCCCchhhhHHHHHHHhC--CCCCcEEeecCcCCHHHHHHHHHcCcceeeeccc
Q 020013 138 -GR--EAGGHVIGQDGLISLLPMVVDLIG--DRDIPIIAAGGIVDARGYVAALSLGAQGICLGTR 197 (332)
Q Consensus 138 -G~--eaGGh~~~~~~~~~ll~~i~~~~~--~~~iPviaaGGI~~~~~v~~al~~GA~gV~~GT~ 197 (332)
|+ +.|+ ..+.++.++.+.+. +.+ .-|.++.+.+.+++.+++.+|+|.+-+.-.
T Consensus 132 ~gR~~d~g~------dg~~~i~~~~~~~~~~~~~-tkIl~AS~R~~~~v~~~~~~G~d~iTip~~ 189 (220)
T d1l6wa_ 132 VNRIDAQGG------SGIQTVTDLHQLLKMHAPQ-AKVLAASFKTPRQALDCLLAGCESITLPLD 189 (220)
T ss_dssp HHHHHHTTS------CHHHHHHHHHHHHHHHCTT-CEEEEBCCSSHHHHHHHHHTTCSEEEECHH
T ss_pred eeehhhccc------CChHHHHHHHHHHHhcCCC-ceEeehhcCCHHHHHHHHHcCCCEEEcCHH
Confidence 32 1121 22455555554331 123 356668899999999999999999987544
|
| >d1ccwa_ c.23.6.1 (A:) Glutamate mutase, small subunit {Clostridium cochlearium [TaxId: 1494]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Flavodoxin-like superfamily: Cobalamin (vitamin B12)-binding domain family: Cobalamin (vitamin B12)-binding domain domain: Glutamate mutase, small subunit species: Clostridium cochlearium [TaxId: 1494]
Probab=93.80 E-value=0.24 Score=37.53 Aligned_cols=85 Identities=18% Similarity=0.040 Sum_probs=50.6
Q ss_pred HHHHhCCCEEE---EecCCHHHHHHHHHcCCCEEEEecCCCCcccCCCCchhhhHHHHHHHhCCCCCcEEeecCcCC---
Q 020013 104 LEAHSAGVKVV---PQVGSFDEARKAVNAGVDAIIVQGREAGGHVIGQDGLISLLPMVVDLIGDRDIPIIAAGGIVD--- 177 (332)
Q Consensus 104 ~~~~~~g~~v~---~~v~s~~~a~~a~~~g~D~ivv~G~eaGGh~~~~~~~~~ll~~i~~~~~~~~iPviaaGGI~~--- 177 (332)
..++..|..|+ ..++..+-...+.+.++|+|.+...-. .|. .....++..+++.. ..++||++.|++.+
T Consensus 25 ~~l~~~G~~V~~LG~~~p~e~iv~a~~~~~~d~v~lS~~~~-~~~---~~~~~~~~~l~~~~-~~~i~iivGG~~~~~~~ 99 (137)
T d1ccwa_ 25 HAFTNAGFNVVNIGVLSPQELFIKAAIETKADAILVSSLYG-QGE---IDCKGLRQKCDEAG-LEGILLYVGGNIVVGKQ 99 (137)
T ss_dssp HHHHHTTCEEEEEEEEECHHHHHHHHHHHTCSEEEEEECSS-THH---HHHTTHHHHHHHTT-CTTCEEEEEESCSSSSC
T ss_pred HHHHHCCCeEEecccccCHHHHHHHHHhcCCCEEEEeeccc-cch---HHHHHHHHHHHHhc-cCCCEEEEeCCcCCCcc
Confidence 44677888776 233334445566788999999865421 121 12233344444432 13799999888864
Q ss_pred --HHHHHHHHHcCcceee
Q 020013 178 --ARGYVAALSLGAQGIC 193 (332)
Q Consensus 178 --~~~v~~al~~GA~gV~ 193 (332)
++...++-++|.++|.
T Consensus 100 ~~~~~~~~l~~~Gv~~if 117 (137)
T d1ccwa_ 100 HWPDVEKRFKDMGYDRVY 117 (137)
T ss_dssp CHHHHHHHHHHTTCSEEC
T ss_pred ccHHHHHHHHHcCCCEEE
Confidence 3344455578988876
|
| >d2ayxa1 c.23.1.1 (A:817-949) Sensor kinase protein RcsC, C-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Flavodoxin-like superfamily: CheY-like family: CheY-related domain: Sensor kinase protein RcsC, C-terminal domain species: Escherichia coli [TaxId: 562]
Probab=93.77 E-value=0.45 Score=35.40 Aligned_cols=81 Identities=14% Similarity=0.044 Sum_probs=58.7
Q ss_pred HHHHhCCCEEEEecCCHHHHHHH-HHcCCCEEEEecCCCCcccCCCCchhhhHHHHHHHhCCCCCcEEeecCcCCHHHHH
Q 020013 104 LEAHSAGVKVVPQVGSFDEARKA-VNAGVDAIIVQGREAGGHVIGQDGLISLLPMVVDLIGDRDIPIIAAGGIVDARGYV 182 (332)
Q Consensus 104 ~~~~~~g~~v~~~v~s~~~a~~a-~~~g~D~ivv~G~eaGGh~~~~~~~~~ll~~i~~~~~~~~iPviaaGGI~~~~~v~ 182 (332)
+.++..|..+. .+.+.++|... ....+|.|++.-.-.+ ...+.++.++++... .+||+.-.|-.+.++..
T Consensus 26 ~~L~~~g~~v~-~a~~g~ea~~~~~~~~~dlillD~~mP~------~dG~el~~~ir~~~~--~~pii~lt~~~~~~~~~ 96 (133)
T d2ayxa1 26 DQLGSLGYQCK-TANDGVDALNVLSKNHIDIVLSDVNMPN------MDGYRLTQRIRQLGL--TLPVIGVTANALAEEKQ 96 (133)
T ss_dssp HHHHHHTSEEE-EECCSHHHHHHHHHSCCSEEEEEESSCS------SCCHHHHHHHHHHHC--CSCEEEEESSTTSHHHH
T ss_pred HHHHHcCCEEE-EECcHHHHHHHHhccCceEEEEeccCCC------CCHHHHHHHHHHhCC--CCCEEEEeccCCHHHHH
Confidence 44566788865 46677777654 4567999999643222 123678888877653 68999888888999999
Q ss_pred HHHHcCcceee
Q 020013 183 AALSLGAQGIC 193 (332)
Q Consensus 183 ~al~~GA~gV~ 193 (332)
+++.+||+++.
T Consensus 97 ~~~~~G~~~~l 107 (133)
T d2ayxa1 97 RCLESGMDSCL 107 (133)
T ss_dssp HHHHCCCEEEE
T ss_pred HHHHcCCCEEE
Confidence 99999998865
|
| >d2g50a2 c.1.12.1 (A:12-115,A:218-395) Pyruvate kinase, N-terminal domain {Rabbit (Oryctolagus cuniculus) [TaxId: 9986]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Phosphoenolpyruvate/pyruvate domain family: Pyruvate kinase domain: Pyruvate kinase, N-terminal domain species: Rabbit (Oryctolagus cuniculus) [TaxId: 9986]
Probab=93.73 E-value=0.86 Score=38.63 Aligned_cols=175 Identities=19% Similarity=0.293 Sum_probs=98.5
Q ss_pred CCCCCCCcHHHHHHHHhCCCceeecC-CCCCCHHHHHHHHHHHHhhc---------CCcEEEEeecCCC-----CHHHHH
Q 020013 17 PLGPDISGPELVAAVANAGGLGLLRA-PDWEAPDYLRDLIRKTRSLT---------ERPFGVGVVLAFP-----HNENIK 81 (332)
Q Consensus 17 pM~~g~s~~~la~avs~aGglG~i~~-~~~~~~e~~~~~i~~~r~~~---------~~p~gvnl~~~~~-----~~~~~~ 81 (332)
-+++-..+++....+.++|. -++.. -+..+.++.++.++.+|+.. .+|.++..-...+ +.+.+.
T Consensus 38 TiGPas~~~e~l~~Li~aGv-nv~RiN~SHg~~e~h~~~i~~iR~~~~~~~~~~il~~~~~I~~d~~~~~l~~~di~di~ 116 (282)
T d2g50a2 38 TIGPASRSVETLKEMIKSGM-NVARMNFSHGTHEYHAETIKNVRTATESFASDPILYRPVAVALDTKGPAVSEKDIQDLK 116 (282)
T ss_dssp ECSTTTCSHHHHHHHHHHTC-CEEEEETTSSCHHHHHHHHHHHHHHHHTTTTCTTTCCCCEEEEECCCCSSCHHHHHHHH
T ss_pred EeCCCCCCHHHHHHHHHcCC-CEEEEeCCCCCHHHHHHHHHHHHHHHHHhCCCceeccccccccccccccccchHHHHHH
Confidence 34434578999999999873 22221 01347788888888887652 1344543322222 134567
Q ss_pred HHHhcCCcEEEEccCCCcHHHHHHHH----h--CCCEEEEecCCHHHHHHHHH--cCCCEEEEe-cCCCCcccCCCCchh
Q 020013 82 AILSEKVAVLQVSWGEYSEELVLEAH----S--AGVKVVPQVGSFDEARKAVN--AGVDAIIVQ-GREAGGHVIGQDGLI 152 (332)
Q Consensus 82 ~~~~~~~~~I~~~~g~~~~~~i~~~~----~--~g~~v~~~v~s~~~a~~a~~--~g~D~ivv~-G~eaGGh~~~~~~~~ 152 (332)
.+.+.++|+|.++|=.. .+-+..++ + ..++++.++.+.+-.....+ .-+|+|.+. |- -|=+. +.....
T Consensus 117 ~a~~~~vD~ialSFVrs-~~DI~~~r~~l~~~g~~~~IiaKIE~~~al~NldeIi~~sDgIMIaRGD-Lg~ei-~~e~vp 193 (282)
T d2g50a2 117 FGVEQDVDMVFASFIRK-AADVHEVRKILGEKGKNIKIISKIENHEGVRRFDEILEASDGIMVARGD-LGIEI-PAEKVF 193 (282)
T ss_dssp HHHHTTCSEEEETTCCS-HHHHHHHHHHHTTTTTTSEEEEEECSHHHHHTHHHHHHHSSEEEEEHHH-HHHHS-CGGGHH
T ss_pred HhhhccccceeecccCC-HHHHHHHHHHHHHcCCCceEEEeecchhhhhcchhhccccceeeeeccc-ccccc-CHHHhH
Confidence 78889999999997543 33333333 2 36789999887654433221 236988873 21 11111 111111
Q ss_pred hhHHHHHHHhCCCCCcEEeecCcC---------C---HHHHHHHHHcCcceeeec
Q 020013 153 SLLPMVVDLIGDRDIPIIAAGGIV---------D---ARGYVAALSLGAQGICLG 195 (332)
Q Consensus 153 ~ll~~i~~~~~~~~iPviaaGGI~---------~---~~~v~~al~~GA~gV~~G 195 (332)
..-..+.+.....+.||+.+.-+- | -.|+.-++..|+|+|++.
T Consensus 194 ~~Qk~Ii~~~~~~~kpvivAt~~leSMi~~~~pTRaEv~Dianav~~G~D~imLs 248 (282)
T d2g50a2 194 LAQKMIIGRCNRAGKPVICATQMLESMIKKPRPTRAEGSDVANAVLDGADCIMLS 248 (282)
T ss_dssp HHHHHHHHHHHHHTCCEEEESSTTGGGGTCSSCCHHHHHHHHHHHHHTCSEEEES
T ss_pred HHHHHHHHHHHhcCCcEEEecccccccccCCCCCHHHHHHHHHHHHhCCCEEEEC
Confidence 111122222111268999876542 2 245677888999999873
|
| >d1zesa1 c.23.1.1 (A:3-123) PhoB receiver domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Flavodoxin-like superfamily: CheY-like family: CheY-related domain: PhoB receiver domain species: Escherichia coli [TaxId: 562]
Probab=93.63 E-value=0.21 Score=36.68 Aligned_cols=85 Identities=18% Similarity=0.194 Sum_probs=61.1
Q ss_pred HHHHHhCCCEEEEecCCHHHHHHHH-HcCCCEEEEecCCCCcccCCCCchhhhHHHHHHHhCCCCCcEEeecCcCCHHHH
Q 020013 103 VLEAHSAGVKVVPQVGSFDEARKAV-NAGVDAIIVQGREAGGHVIGQDGLISLLPMVVDLIGDRDIPIIAAGGIVDARGY 181 (332)
Q Consensus 103 i~~~~~~g~~v~~~v~s~~~a~~a~-~~g~D~ivv~G~eaGGh~~~~~~~~~ll~~i~~~~~~~~iPviaaGGI~~~~~v 181 (332)
...++..|..+. .+.+.++|.... +.-+|.|++.-.- .....+.++.++++.-...++|||.-.+-.+.++.
T Consensus 17 ~~~L~~~g~~v~-~a~~~~~al~~l~~~~~dlil~D~~m------p~~~G~~l~~~lr~~~~~~~~pvi~lt~~~~~~~~ 89 (121)
T d1zesa1 17 CFVLEQNGFQPV-EAEDYDSAVNQLNEPWPDLILLDWML------PGGSGIQFIKHLKRESMTRDIPVVMLTARGEEEDR 89 (121)
T ss_dssp HHHHHHTTCEEE-EECSHHHHHHHSSSSCCSEEEECSSC------TTSCHHHHHHHHHHSTTTTTSCEEEEESCCSHHHH
T ss_pred HHHHHHCCCEEE-EECChHHHHHHHHccCCCEEEeecCC------CCCCHHHHHHHHHhCccCCCCeEEEEECCCCHHHH
Confidence 345667788765 477888887764 4569999985321 11234778888876432236999998889899999
Q ss_pred HHHHHcCcceeee
Q 020013 182 VAALSLGAQGICL 194 (332)
Q Consensus 182 ~~al~~GA~gV~~ 194 (332)
.+++.+||++...
T Consensus 90 ~~~~~~G~~d~l~ 102 (121)
T d1zesa1 90 VRGLETGADDYIT 102 (121)
T ss_dssp HHHHHHTCSEEEE
T ss_pred HHHHHCCCCEEEE
Confidence 9999999998753
|
| >d1ny5a1 c.23.1.1 (A:1-137) Transcriptional activator sigm54 (NtrC1), N-terminal domain {Aquifex aeolicus [TaxId: 63363]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Flavodoxin-like superfamily: CheY-like family: CheY-related domain: Transcriptional activator sigm54 (NtrC1), N-terminal domain species: Aquifex aeolicus [TaxId: 63363]
Probab=93.52 E-value=0.3 Score=36.65 Aligned_cols=82 Identities=16% Similarity=0.136 Sum_probs=60.9
Q ss_pred HHHHhCCCEEEEecCCHHHHHHHH-HcCCCEEEEecCCCCcccCCCCchhhhHHHHHHHhCCCCCcEEeecCcCCHHHHH
Q 020013 104 LEAHSAGVKVVPQVGSFDEARKAV-NAGVDAIIVQGREAGGHVIGQDGLISLLPMVVDLIGDRDIPIIAAGGIVDARGYV 182 (332)
Q Consensus 104 ~~~~~~g~~v~~~v~s~~~a~~a~-~~g~D~ivv~G~eaGGh~~~~~~~~~ll~~i~~~~~~~~iPviaaGGI~~~~~v~ 182 (332)
..+...|..|. .+.|.++|.... +..+|.|++.-.-.+ ...+.++..+++..+ ++|||.-.|-.+.+.+.
T Consensus 18 ~~L~~~g~~v~-~a~~~~eAl~~l~~~~~dlvilD~~mp~------~~G~e~~~~lr~~~~--~~piI~lT~~~~~~~~~ 88 (137)
T d1ny5a1 18 EYLSMKGIKVE-SAERGKEAYKLLSEKHFNVVLLDLLLPD------VNGLEILKWIKERSP--ETEVIVITGHGTIKTAV 88 (137)
T ss_dssp HHHHHHTCEEE-EESSHHHHHHHHHHSCCSEEEEESBCSS------SBHHHHHHHHHHHCT--TSEEEEEEETTCHHHHH
T ss_pred HHHHHCCCEEE-EECCHHHHHHHhhccccccchHHHhhhh------hhHHHHHHHHHHhCC--CCCEEEEECCCCHHHHH
Confidence 34455688775 578888888765 467999998633211 233678888876543 79999988888999999
Q ss_pred HHHHcCcceeee
Q 020013 183 AALSLGAQGICL 194 (332)
Q Consensus 183 ~al~~GA~gV~~ 194 (332)
+++.+||+....
T Consensus 89 ~a~~~Ga~dyl~ 100 (137)
T d1ny5a1 89 EAMKMGAYDFLT 100 (137)
T ss_dssp HHHTTTCCEEEE
T ss_pred HHHHcCCCEEEe
Confidence 999999988764
|
| >d2p10a1 c.1.12.9 (A:8-204) Uncharacterized protein Mll9387 {Mesorhizobium loti [TaxId: 381]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Phosphoenolpyruvate/pyruvate domain family: Mll9387-like domain: Uncharacterized protein Mll9387 species: Mesorhizobium loti [TaxId: 381]
Probab=93.48 E-value=0.14 Score=41.33 Aligned_cols=87 Identities=14% Similarity=0.137 Sum_probs=54.3
Q ss_pred HHhCCCEEEEecCCHHHHHHHHHcCCCEEEEecCC---CCcccC--CCC-------chhhhHHHHHHHhCCCCCcEEeec
Q 020013 106 AHSAGVKVVPQVGSFDEARKAVNAGVDAIIVQGRE---AGGHVI--GQD-------GLISLLPMVVDLIGDRDIPIIAAG 173 (332)
Q Consensus 106 ~~~~g~~v~~~v~s~~~a~~a~~~g~D~ivv~G~e---aGGh~~--~~~-------~~~~ll~~i~~~~~~~~iPviaaG 173 (332)
+++....+++.+.+.-.|+.++++|.|++.+.+.. +-|+.. +.. ..+....++...+ .++|||+..
T Consensus 16 l~~~~~l~~~g~~d~lsAklae~aGfdai~~~~~g~~~s~g~~~~~g~l~~~d~~~~~~~~a~~i~~~v--~~iPviaD~ 93 (197)
T d2p10a1 16 IRAGEPIIGGGAGTGLSAKSEEAGDIDLIVIYNSGRYRMAGRGSLAGLLAYGNANQIVVDMAREVLPVV--RHTPVLAGV 93 (197)
T ss_dssp HHTTCCEEEEEESSHHHHHHHHHTTCSEEEECHHHHHHHTTCCGGGGGBTEEEHHHHHHHHHHHHGGGC--SSSCEEEEE
T ss_pred HhCCCCEEEcccccHHHHHHHHHcCCCEEEEecHHHHHHcCCcccccccChhHHHHHHHHHHHHHHHhc--ccCceEEec
Confidence 34456778899999999999999999999986642 112110 000 0122233333333 269999865
Q ss_pred C-cCCH----HHHHHHHHcCcceeee
Q 020013 174 G-IVDA----RGYVAALSLGAQGICL 194 (332)
Q Consensus 174 G-I~~~----~~v~~al~~GA~gV~~ 194 (332)
. -.+. +.+.++.++|+.||++
T Consensus 94 dG~g~~~nv~rtv~~~~~aG~agI~~ 119 (197)
T d2p10a1 94 NGTDPFMVMSTFLRELKEIGFAGVQN 119 (197)
T ss_dssp CTTCTTCCHHHHHHHHHHHTCCEEEE
T ss_pred CCCCcchhHHHHHHHHHHcCCeEEec
Confidence 4 1112 4566777899999974
|
| >d1to3a_ c.1.10.1 (A:) Putative aldolase YihT {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Aldolase family: Class I aldolase domain: Putative aldolase YihT species: Salmonella typhimurium [TaxId: 90371]
Probab=93.44 E-value=0.12 Score=44.51 Aligned_cols=116 Identities=21% Similarity=0.309 Sum_probs=68.6
Q ss_pred HHHHHHhcCCcEEEEc--cC-CCcHH--------HHHHHHhCCCEEEEecC----------C-HH----HHHHHHHcCCC
Q 020013 79 NIKAILSEKVAVLQVS--WG-EYSEE--------LVLEAHSAGVKVVPQVG----------S-FD----EARKAVNAGVD 132 (332)
Q Consensus 79 ~~~~~~~~~~~~I~~~--~g-~~~~~--------~i~~~~~~g~~v~~~v~----------s-~~----~a~~a~~~g~D 132 (332)
.++.+...|+++|-+. ++ +.+.+ +.+.+++.|++++..+- + ++ .++.+.+.|+|
T Consensus 111 sv~~a~~~GadaVk~lv~~~~d~~~e~~~~~~~~l~~~c~~~glp~llE~l~~~~~~~~~~~~~~~i~~a~r~~~e~GaD 190 (291)
T d1to3a_ 111 NAQAVKRDGAKALKLLVLWRSDEDAQQRLNMVKEFNELCHSNGLLSIIEPVVRPPRCGDKFDREQAIIDAAKELGDSGAD 190 (291)
T ss_dssp CHHHHHHTTCCEEEEEEEECTTSCHHHHHHHHHHHHHHHHTTTCEEEEEEEECCCSSCSCCCHHHHHHHHHHHHTTSSCS
T ss_pred CHHHHHhccCceEEEEEeeCCcccHHHHHHHHHHHHHHHHHcCCcceEEEEecCCCcccccchHHHHHHHHHHHHhcCCc
Confidence 3567788899887442 23 22222 22345667998775321 1 22 23455688999
Q ss_pred EEEEecCCCCcccCC-CCchhhhHHHHHHHhCCCCCc-EEeecCcCCHHHHHHH----HHcCcceeeeccccccC
Q 020013 133 AIIVQGREAGGHVIG-QDGLISLLPMVVDLIGDRDIP-IIAAGGIVDARGYVAA----LSLGAQGICLGTRFVAS 201 (332)
Q Consensus 133 ~ivv~G~eaGGh~~~-~~~~~~ll~~i~~~~~~~~iP-viaaGGI~~~~~v~~a----l~~GA~gV~~GT~fl~t 201 (332)
.+.+.-+ |.... .........++.+.. .+| |+++||. +.+++.+. +..||.|+.+|..+...
T Consensus 191 i~K~~~p---~~~~~~~~~~~~~~~~~~~~~---~~p~vvLs~G~-~~~~f~~~l~~A~~aGa~G~~~GR~iw~~ 258 (291)
T d1to3a_ 191 LYKVEMP---LYGKGARSDLLTASQRLNGHI---NMPWVILSSGV-DEKLFPRAVRVAMEAGASGFLAGRAVWSS 258 (291)
T ss_dssp EEEECCG---GGGCSCHHHHHHHHHHHHHTC---CSCEEECCTTS-CTTTHHHHHHHHHHTTCCEEEESHHHHGG
T ss_pred EEEEecC---CCchhhhHHHHHHHHHHhhcC---CCcEEEEeCCC-CHHHHHHHHHHHHHCCCeEEEeChhhhhC
Confidence 9998643 11101 111233344555544 688 7778887 66776654 45899999999887653
|
| >d7reqa2 c.23.6.1 (A:561-728) Methylmalonyl-CoA mutase alpha subunit, C-terminal domain {Propionibacterium freudenreichii, subsp. shermanii [TaxId: 1744]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Flavodoxin-like superfamily: Cobalamin (vitamin B12)-binding domain family: Cobalamin (vitamin B12)-binding domain domain: Methylmalonyl-CoA mutase alpha subunit, C-terminal domain species: Propionibacterium freudenreichii, subsp. shermanii [TaxId: 1744]
Probab=93.41 E-value=0.94 Score=35.29 Aligned_cols=80 Identities=29% Similarity=0.359 Sum_probs=47.7
Q ss_pred HHHhCCCEEEEe-c-CCHH-HHHHHHHcCCCEEEEecCCCCcccCCCCchhhhHHHHHHHhC---CCCCcEEeecCcCCH
Q 020013 105 EAHSAGVKVVPQ-V-GSFD-EARKAVNAGVDAIIVQGREAGGHVIGQDGLISLLPMVVDLIG---DRDIPIIAAGGIVDA 178 (332)
Q Consensus 105 ~~~~~g~~v~~~-v-~s~~-~a~~a~~~g~D~ivv~G~eaGGh~~~~~~~~~ll~~i~~~~~---~~~iPviaaGGI~~~ 178 (332)
.+++.|..|+.. . .+++ -+..+.+.++|.|.+... .++| +.+++++.+.++ ..++||++.|-| ..
T Consensus 60 ~l~~~G~eVi~lg~~~~~e~iv~aa~~~~advI~iSs~-~~~~-------~~~~~~l~~~L~~~g~~~v~VivGG~i-p~ 130 (168)
T d7reqa2 60 AYADLGFDVDVGPLFQTPEETARQAVEADVHVVGVSSL-AGGH-------LTLVPALRKELDKLGRPDILITVGGVI-PE 130 (168)
T ss_dssp HHHHTTCEEEECCTTBCHHHHHHHHHHHTCSEEEEEEC-SSCH-------HHHHHHHHHHHHHTTCTTSEEEEEESC-CG
T ss_pred HHHhCCcceecCCCcCcHHHHHHHHHccCCCEEEEecC-cccc-------hHHHHHHHHHHHhcCCCCeEEEEeCCC-CH
Confidence 345556655532 1 1333 344566789999998533 2223 345555554442 135777765545 77
Q ss_pred HHHHHHHHcCcceee
Q 020013 179 RGYVAALSLGAQGIC 193 (332)
Q Consensus 179 ~~v~~al~~GA~gV~ 193 (332)
++..++..+|.+.|.
T Consensus 131 ~d~~~l~~~Gv~~iF 145 (168)
T d7reqa2 131 QDFDELRKDGAVEIY 145 (168)
T ss_dssp GGHHHHHHHTEEEEE
T ss_pred HHHHHHHhCCCCEEE
Confidence 888888899998764
|
| >d1qwga_ c.1.27.1 (A:) (2r)-phospho-3-sulfolactate synthase ComA {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: (2r)-phospho-3-sulfolactate synthase ComA family: (2r)-phospho-3-sulfolactate synthase ComA domain: (2r)-phospho-3-sulfolactate synthase ComA species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=93.36 E-value=0.2 Score=41.96 Aligned_cols=97 Identities=22% Similarity=0.319 Sum_probs=65.8
Q ss_pred CCHHHHHHHHHHHHhhcCCcEEEEeec-----CCCCHHHHHHHHhcCCcEEEEccCC--CcH----HHHHHHHhCCCEEE
Q 020013 46 EAPDYLRDLIRKTRSLTERPFGVGVVL-----AFPHNENIKAILSEKVAVLQVSWGE--YSE----ELVLEAHSAGVKVV 114 (332)
Q Consensus 46 ~~~e~~~~~i~~~r~~~~~p~gvnl~~-----~~~~~~~~~~~~~~~~~~I~~~~g~--~~~----~~i~~~~~~g~~v~ 114 (332)
.+.+.+++.++..++..-.|+--+.+. ....+++++.+.+.|.+.|.++-|. .|. ++++.+++.|.+|+
T Consensus 52 ~p~~~l~eKI~l~~~~~V~v~~GGtlfE~a~~qg~~~~y~~~~~~lGf~~iEiSdg~~~i~~~~~~~~I~~~~~~G~~V~ 131 (251)
T d1qwga_ 52 IDRDVVKEKINYYKDWGIKVYPGGTLFEYAYSKGKFDEFLNECEKLGFEAVEISDGSSDISLEERNNAIKRAKDNGFMVL 131 (251)
T ss_dssp SCHHHHHHHHHHHHTTTCEEEECHHHHHHHHHTTCHHHHHHHHHHHTCCEEEECCSSSCCCHHHHHHHHHHHHHTTCEEE
T ss_pred cCHHHHHHHHHHHHHcCCeEeCCcHHHHHHHHcCCHHHHHHHHHHcCCCEEEEcCCccCCCHHHHHHHHHHHHhCCCEEe
Confidence 455668888888876421222111111 1223788999999999999998543 222 46677778899999
Q ss_pred EecCC----------HH----HHHHHHHcCCCEEEEecCCCC
Q 020013 115 PQVGS----------FD----EARKAVNAGVDAIIVQGREAG 142 (332)
Q Consensus 115 ~~v~s----------~~----~a~~a~~~g~D~ivv~G~eaG 142 (332)
..++. ++ .++..+++|++.|++++.|+|
T Consensus 132 ~EvG~K~~~~~~~~~~~~~i~~~~~~LeaGA~~ViiEarEsg 173 (251)
T d1qwga_ 132 TEVGKKMPDKDKQLTIDDRIKLINFDLDAGADYVIIEGRESG 173 (251)
T ss_dssp EEECCSSHHHHTTCCHHHHHHHHHHHHHHTCSEEEECCTTTC
T ss_pred ecccCCCCCCccccCHHHHHHHHHHHHHCCCceeEeehhhcC
Confidence 87762 22 355668999999999999976
|
| >d1xxxa1 c.1.10.1 (A:5-300) Dihydrodipicolinate synthase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Aldolase family: Class I aldolase domain: Dihydrodipicolinate synthase species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=93.36 E-value=0.12 Score=44.26 Aligned_cols=122 Identities=19% Similarity=0.324 Sum_probs=67.8
Q ss_pred HHHHHHHcCCCEEEEecCCCCcccCCCCchhhhHHHHHHHhCCCCCcEEeecCcCCHHHHH----HHHHcCcceeeeccc
Q 020013 122 EARKAVNAGVDAIIVQGREAGGHVIGQDGLISLLPMVVDLIGDRDIPIIAAGGIVDARGYV----AALSLGAQGICLGTR 197 (332)
Q Consensus 122 ~a~~a~~~g~D~ivv~G~eaGGh~~~~~~~~~ll~~i~~~~~~~~iPviaaGGI~~~~~v~----~al~~GA~gV~~GT~ 197 (332)
.+....+.|+++|++-|..+.++.-....-..++..+++..+. ++|+++.-|=.+.+++. .+..+|||++++...
T Consensus 33 ~i~~li~~Gv~Gi~v~G~tGE~~~Ls~eEr~~l~~~~~~~~~~-~~~vi~g~~~~s~~~~i~~a~~a~~~Gad~v~i~~P 111 (296)
T d1xxxa1 33 LANHLVDQGCDGLVVSGTTGESPTTTDGEKIELLRAVLEAVGD-RARVIAGAGTYDTAHSIRLAKACAAEGAHGLLVVTP 111 (296)
T ss_dssp HHHHHHHTTCSEEEESSTTTTTTTSCHHHHHHHHHHHHHHHTT-TSEEEEECCCSCHHHHHHHHHHHHHHTCSEEEEECC
T ss_pred HHHHHHHcCCCEEEECeeccchhhCCHHHHHHHHHHHHHHhcc-ccceEeccccchhHHHHHHHHHHHHhcCCeEEEEec
Confidence 4456778999999996654333321111224556666666643 68887665554656554 344589999999988
Q ss_pred cccCc-cCCCCHHHHHHHhcCCCceEEEEecccCCCCCCceeecChHHHhhhc
Q 020013 198 FVASE-ESYAHPEYKRKLVEMDKTEYTDVFGRARWPGAPHRVLQTPFFSNWKN 249 (332)
Q Consensus 198 fl~t~-Es~~~~~~k~~~~~~~~t~~t~~~~~~~~~g~~~R~l~n~~~~~~~~ 249 (332)
+.... +...-+-||+ +.++.+.-+ .++.. |+...+.+...+.+++.+
T Consensus 112 ~~~~~~~~~l~~~~~~-v~~~~~~pi-~lYn~---p~~~g~~~~~~~~~~L~~ 159 (296)
T d1xxxa1 112 YYSKPPQRGLQAHFTA-VADATELPM-LLYDI---PGRSAVPIEPDTIRALAS 159 (296)
T ss_dssp CSSCCCHHHHHHHHHH-HHTTCSSCE-EEEEC---HHHHSSCCCHHHHHHHHT
T ss_pred cCCCCCHHHHHHHHHH-HHHhcCCCE-EEEEC---ccccCCCCCHHHHHHhcC
Confidence 76542 2223334444 444444332 24432 322234455555555543
|
| >d1w25a1 c.23.1.1 (A:2-140) Response regulator PleD, receiver domain {Caulobacter crescentus [TaxId: 155892]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Flavodoxin-like superfamily: CheY-like family: CheY-related domain: Response regulator PleD, receiver domain species: Caulobacter crescentus [TaxId: 155892]
Probab=93.25 E-value=0.49 Score=35.46 Aligned_cols=85 Identities=13% Similarity=0.020 Sum_probs=59.6
Q ss_pred HHHHHhCCCEEEEecCCHHHHHHH-HHcCCCEEEEecCCCCcccCCCCchhhhHHHHHHHhCCCCCcEEeecCcCCHHHH
Q 020013 103 VLEAHSAGVKVVPQVGSFDEARKA-VNAGVDAIIVQGREAGGHVIGQDGLISLLPMVVDLIGDRDIPIIAAGGIVDARGY 181 (332)
Q Consensus 103 i~~~~~~g~~v~~~v~s~~~a~~a-~~~g~D~ivv~G~eaGGh~~~~~~~~~ll~~i~~~~~~~~iPviaaGGI~~~~~v 181 (332)
.+.++..|..|. .+.+.++|... .+..+|.|++.=.- .....+.++..++......++|||.-.|-.+.+..
T Consensus 18 ~~~L~~~g~~v~-~a~~~~eal~~~~~~~~dlil~D~~~------p~~~G~~~~~~ir~~~~~~~~piI~lt~~~~~~~~ 90 (139)
T d1w25a1 18 EAKLTAEYYEVS-TAMDGPTALAMAARDLPDIILLDVMM------PGMDGFTVCRKLKDDPTTRHIPVVLITALDGRGDR 90 (139)
T ss_dssp HHHHHHTTCEEE-EESSHHHHHHHHHHHCCSEEEEESCC------SSSCHHHHHHHHHHSTTTTTSCEEEEECSSCHHHH
T ss_pred HHHHHHCCCEEE-EEccchhhhhhhhcccceeeeeeccc------cCCCchHHHHHhhhcccccCCCEEEEEcCCCHHHH
Confidence 345567788765 67788887764 45689999884211 11123566666665432237999999999999999
Q ss_pred HHHHHcCcceeee
Q 020013 182 VAALSLGAQGICL 194 (332)
Q Consensus 182 ~~al~~GA~gV~~ 194 (332)
.+++.+||+....
T Consensus 91 ~~a~~~Ga~dyl~ 103 (139)
T d1w25a1 91 IQGLESGASDFLT 103 (139)
T ss_dssp HHHHHHTCCEEEE
T ss_pred HHHHHcCCCEEEE
Confidence 9999999998764
|
| >d1o5ka_ c.1.10.1 (A:) Dihydrodipicolinate synthase {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Aldolase family: Class I aldolase domain: Dihydrodipicolinate synthase species: Thermotoga maritima [TaxId: 2336]
Probab=93.18 E-value=0.12 Score=44.17 Aligned_cols=79 Identities=24% Similarity=0.422 Sum_probs=50.4
Q ss_pred HHHHHHHcCCCEEEEecCCCCcccCCCCchhhhHHHHHHHhCCCCCcEEeecCcCCHHHHH----HHHHcCcceeeeccc
Q 020013 122 EARKAVNAGVDAIIVQGREAGGHVIGQDGLISLLPMVVDLIGDRDIPIIAAGGIVDARGYV----AALSLGAQGICLGTR 197 (332)
Q Consensus 122 ~a~~a~~~g~D~ivv~G~eaGGh~~~~~~~~~ll~~i~~~~~~~~iPviaaGGI~~~~~v~----~al~~GA~gV~~GT~ 197 (332)
.++...+.|+|+|++-|..+.++.-....-..++..+.+.... ++|||+.-|=.+.+++. .+-.+|||++++...
T Consensus 27 ~i~~l~~~Gv~Gi~v~GstGE~~~Ls~~Er~~~~~~~~~~~~~-~~~vi~gv~~~st~~ai~~a~~A~~~Gad~v~v~pP 105 (295)
T d1o5ka_ 27 LVRYQLENGVNALIVLGTTGESPTVNEDEREKLVSRTLEIVDG-KIPVIVGAGTNSTEKTLKLVKQAEKLGANGVLVVTP 105 (295)
T ss_dssp HHHHHHHTTCCEEEESSGGGTGGGCCHHHHHHHHHHHHHHHTT-SSCEEEECCCSCHHHHHHHHHHHHHHTCSEEEEECC
T ss_pred HHHHHHHcCCCEEEECeeccchhhCCHHHHHHHhhhhcccccc-CCceEeecccccHHHHHHHHHHHHHcCCCEEEEeCC
Confidence 4556678899999996654333321111224455556666543 68988877755666644 334589999999888
Q ss_pred cccC
Q 020013 198 FVAS 201 (332)
Q Consensus 198 fl~t 201 (332)
+...
T Consensus 106 ~y~~ 109 (295)
T d1o5ka_ 106 YYNK 109 (295)
T ss_dssp CSSC
T ss_pred CCCC
Confidence 7653
|
| >d1zh2a1 c.23.1.1 (A:2-120) Transcriptional regulatory protein KdpE, N-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Flavodoxin-like superfamily: CheY-like family: CheY-related domain: Transcriptional regulatory protein KdpE, N-terminal domain species: Escherichia coli [TaxId: 562]
Probab=93.14 E-value=0.27 Score=35.91 Aligned_cols=82 Identities=16% Similarity=0.186 Sum_probs=59.2
Q ss_pred HHHHHhCCCEEEEecCCHHHHHHHH-HcCCCEEEEecCCCCcccCCCCchhhhHHHHHHHhCCCCCcEEeecCcCCHHHH
Q 020013 103 VLEAHSAGVKVVPQVGSFDEARKAV-NAGVDAIIVQGREAGGHVIGQDGLISLLPMVVDLIGDRDIPIIAAGGIVDARGY 181 (332)
Q Consensus 103 i~~~~~~g~~v~~~v~s~~~a~~a~-~~g~D~ivv~G~eaGGh~~~~~~~~~ll~~i~~~~~~~~iPviaaGGI~~~~~v 181 (332)
.+.+++.|..+. .+.+.++|.... +..+|.|++.=.- .....+.++.++++.. .+|+|.--+-.+.++.
T Consensus 17 ~~~L~~~g~~v~-~a~~~~eal~~l~~~~~dliilD~~m------P~~~G~e~~~~ir~~~---~~piI~lt~~~~~~~~ 86 (119)
T d1zh2a1 17 RTALEGDGMRVF-EAETLQRGLLEAATRKPDLIILDLGL------PDGDGIEFIRDLRQWS---AVPVIVLSARSEESDK 86 (119)
T ss_dssp HHHHHTTTCEEE-EESSHHHHHHHHHHHCCSEEEEESEE------TTEEHHHHHHHHHTTC---CCCEEEEESCCSHHHH
T ss_pred HHHHHHCCCEEE-EeCCHHHHHHHHHhcCCCEEEecccc------CCCCCchHHHHHHhcc---CCcEEEEeccCCHHHH
Confidence 344566788865 567788876544 5689999985321 1123367788887643 6899999999899999
Q ss_pred HHHHHcCcceeee
Q 020013 182 VAALSLGAQGICL 194 (332)
Q Consensus 182 ~~al~~GA~gV~~ 194 (332)
.+++.+||+....
T Consensus 87 ~~a~~~Ga~dyl~ 99 (119)
T d1zh2a1 87 IAALDAGADDYLS 99 (119)
T ss_dssp HHHHHHTCSEEEE
T ss_pred HHHHHcCCCEEEE
Confidence 9999999997753
|
| >d1dbwa_ c.23.1.1 (A:) Transcriptional regulatory protein FixJ, receiver domain {Rhizobium meliloti [TaxId: 382]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Flavodoxin-like superfamily: CheY-like family: CheY-related domain: Transcriptional regulatory protein FixJ, receiver domain species: Rhizobium meliloti [TaxId: 382]
Probab=93.12 E-value=0.4 Score=35.15 Aligned_cols=82 Identities=21% Similarity=0.130 Sum_probs=60.6
Q ss_pred HHHHHhCCCEEEEecCCHHHHHHHH-HcCCCEEEEecCCCCcccCCCCchhhhHHHHHHHhCCCCCcEEeecCcCCHHHH
Q 020013 103 VLEAHSAGVKVVPQVGSFDEARKAV-NAGVDAIIVQGREAGGHVIGQDGLISLLPMVVDLIGDRDIPIIAAGGIVDARGY 181 (332)
Q Consensus 103 i~~~~~~g~~v~~~v~s~~~a~~a~-~~g~D~ivv~G~eaGGh~~~~~~~~~ll~~i~~~~~~~~iPviaaGGI~~~~~v 181 (332)
.+.++..|..|. .+.+.+++.... +..+|.|+++=.-.+ ...+.+++++++..+ ++|+|.-.|-.+.+..
T Consensus 20 ~~~L~~~g~~v~-~a~~~~~al~~~~~~~~dlvi~D~~mp~------~~G~e~~~~lr~~~~--~~~iI~lt~~~~~~~~ 90 (123)
T d1dbwa_ 20 AFMLTMNGFAVK-MHQSAEAFLAFAPDVRNGVLVTDLRMPD------MSGVELLRNLGDLKI--NIPSIVITGHGDVPMA 90 (123)
T ss_dssp HHHHHHTTCEEE-EESCHHHHHHHGGGCCSEEEEEECCSTT------SCHHHHHHHHHHTTC--CCCEEEEECTTCHHHH
T ss_pred HHHHHHCCCEEE-EECCHHHHHHHHhhcCCcEEEEeccCcc------ccchHHHHHHHhcCC--CCeEEEEEeeCCHHHH
Confidence 345667788764 578888887765 456888888533111 233778888887543 7999999999999999
Q ss_pred HHHHHcCcceee
Q 020013 182 VAALSLGAQGIC 193 (332)
Q Consensus 182 ~~al~~GA~gV~ 193 (332)
.+++.+||+...
T Consensus 91 ~~a~~~Ga~~yl 102 (123)
T d1dbwa_ 91 VEAMKAGAVDFI 102 (123)
T ss_dssp HHHHHTTCSEEE
T ss_pred HHHHHCCCCEEE
Confidence 999999998765
|
| >d1gtea2 c.1.4.1 (A:533-844) Dihydropyrimidine dehydrogenase, domain 4 {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: FMN-linked oxidoreductases family: FMN-linked oxidoreductases domain: Dihydropyrimidine dehydrogenase, domain 4 species: Pig (Sus scrofa) [TaxId: 9823]
Probab=93.08 E-value=0.48 Score=40.65 Aligned_cols=90 Identities=14% Similarity=0.188 Sum_probs=65.0
Q ss_pred CHHHHHHHHHHHHhhcCCcEEEEeecCCCC-HHHHHHHHhcCCcEEEEccC-----------------------------
Q 020013 47 APDYLRDLIRKTRSLTERPFGVGVVLAFPH-NENIKAILSEKVAVLQVSWG----------------------------- 96 (332)
Q Consensus 47 ~~e~~~~~i~~~r~~~~~p~gvnl~~~~~~-~~~~~~~~~~~~~~I~~~~g----------------------------- 96 (332)
+++.+++.++.+|+.++.|+.+.+-....+ .+..+.+.+.+++.|.+...
T Consensus 155 ~~~~~~~i~~~v~~~~~~pv~vKl~~~~~~~~~i~~~~~~~g~~gi~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~gg~s 234 (312)
T d1gtea2 155 DPELVRNICRWVRQAVQIPFFAKLTPNVTDIVSIARAAKEGGADGVTATNTVSGLMGLKADGTPWPAVGAGKRTTYGGVS 234 (312)
T ss_dssp CHHHHHHHHHHHHHHCSSCEEEEECSCSSCHHHHHHHHHHHTCSEEEECCCEEECCCBCTTSCBSSCBTTTTBBCCEEEE
T ss_pred hHHHHHHHHHHHhhccCCceeecccccchhHHHHHHHHHHhcccceEEEeeccccccccccccccccccccccccccccc
Confidence 577889999999999999999987654333 34456677889998865310
Q ss_pred -CC----cHHHHHHHHhC--CCEEEE--ecCCHHHHHHHHHcCCCEEEE
Q 020013 97 -EY----SEELVLEAHSA--GVKVVP--QVGSFDEARKAVNAGVDAIIV 136 (332)
Q Consensus 97 -~~----~~~~i~~~~~~--g~~v~~--~v~s~~~a~~a~~~g~D~ivv 136 (332)
.. ..++++.+++. +++++. .+.+.+++.+...+|||+|-+
T Consensus 235 G~~i~~~al~~v~~~~~~~~~ipIi~~GGI~~~~d~~~~l~aGA~~Vqv 283 (312)
T d1gtea2 235 GTAIRPIALRAVTTIARALPGFPILATGGIDSAESGLQFLHSGASVLQV 283 (312)
T ss_dssp SGGGHHHHHHHHHHHHHHSTTCCEEEESSCCSHHHHHHHHHTTCSEEEE
T ss_pred CcCcchhhHHHHHHHHHHcCCCcEEEEcCCCCHHHHHHHHHcCCCeeEE
Confidence 00 02455666552 577775 478999999999999999987
|
| >d2a6na1 c.1.10.1 (A:1-292) Dihydrodipicolinate synthase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Aldolase family: Class I aldolase domain: Dihydrodipicolinate synthase species: Escherichia coli [TaxId: 562]
Probab=93.03 E-value=0.14 Score=43.86 Aligned_cols=122 Identities=17% Similarity=0.184 Sum_probs=68.5
Q ss_pred HHHHHHHcCCCEEEEecCCCCcccCCCCchhhhHHHHHHHhCCCCCcEEeecCcCCHHHHHHHH----HcCcceeeeccc
Q 020013 122 EARKAVNAGVDAIIVQGREAGGHVIGQDGLISLLPMVVDLIGDRDIPIIAAGGIVDARGYVAAL----SLGAQGICLGTR 197 (332)
Q Consensus 122 ~a~~a~~~g~D~ivv~G~eaGGh~~~~~~~~~ll~~i~~~~~~~~iPviaaGGI~~~~~v~~al----~~GA~gV~~GT~ 197 (332)
.++...+.|+|+|++-|..+-++.-....-..++..+++.... ++||++..|=.+.++..+.. ++|||++++...
T Consensus 27 ~i~~l~~~Gv~Gl~~~GstGE~~~Ls~~Er~~~~~~~~~~~~~-~~~vi~g~~~~s~~~~i~~~~~a~~~Gad~~~~~pP 105 (292)
T d2a6na1 27 LIDYHVASGTSAIVSVGTTGESATLNHDEHADVVMMTLDLADG-RIPVIAGTGANATAEAISLTQRFNDSGIVGCLTVTP 105 (292)
T ss_dssp HHHHHHHHTCCEEEESSTTTTGGGSCHHHHHHHHHHHHHHHTT-SSCEEEECCCSSHHHHHHHHHTTTTSSCCEEEEECC
T ss_pred HHHHHHHcCCCEEEECeeccchhhCCHHHHHHHhhhhhhhccc-cceeEeecccchHHHHHHHhccHHhcCCcceeccCC
Confidence 4556678899999996654333321111124456666666643 68988877776777665554 379999999988
Q ss_pred cccCc-cCCCCHHHHHHHhcCCCceEEEEecccCCCCCCceeecChHHHhhhc
Q 020013 198 FVASE-ESYAHPEYKRKLVEMDKTEYTDVFGRARWPGAPHRVLQTPFFSNWKN 249 (332)
Q Consensus 198 fl~t~-Es~~~~~~k~~~~~~~~t~~t~~~~~~~~~g~~~R~l~n~~~~~~~~ 249 (332)
+.... +...-+ |=+.+.++.+.-+ .++.. |...+..+...+..++.+
T Consensus 106 ~~~~~~~~~i~~-~f~~v~~~~~~pi-~iYn~---P~~~g~~~~~e~~~~L~~ 153 (292)
T d2a6na1 106 YYNRPSQEGLYQ-HFKAIAEHTDLPQ-ILYNV---PSATGCDLLPETVGRLAK 153 (292)
T ss_dssp CSSCCCHHHHHH-HHHHHHHTCSSCE-EEEEC---HHHHSCCCCHHHHHHHHT
T ss_pred CCCCCCHHHHHH-HHHHHhhccCCcE-EEEEe---ccccCCccCHHHHHHHhc
Confidence 77532 222222 3334444444332 24432 222233455555555443
|
| >d1dcfa_ c.23.1.2 (A:) Receiver domain of the ethylene receptor {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Flavodoxin-like superfamily: CheY-like family: Receiver domain of the ethylene receptor domain: Receiver domain of the ethylene receptor species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=93.03 E-value=0.61 Score=34.64 Aligned_cols=84 Identities=17% Similarity=0.167 Sum_probs=59.0
Q ss_pred HHHHhCCCEEEEecCCHHHHHHHHHcCCCEEEEecCCCCcccCCCCchhhhHHHHHHHhCC---CCCcEEeecCcCCHHH
Q 020013 104 LEAHSAGVKVVPQVGSFDEARKAVNAGVDAIIVQGREAGGHVIGQDGLISLLPMVVDLIGD---RDIPIIAAGGIVDARG 180 (332)
Q Consensus 104 ~~~~~~g~~v~~~v~s~~~a~~a~~~g~D~ivv~G~eaGGh~~~~~~~~~ll~~i~~~~~~---~~iPviaaGGI~~~~~ 180 (332)
+.++..|..+. .+.+.++|..+.+...|.|+++=.=.+ ...+.++.++++.... ..+|||+--|-.+.++
T Consensus 25 ~~L~~~G~~v~-~a~~g~eal~~l~~~~dlillD~~mP~------~dG~el~~~ir~~~~~~~~~~~~ii~lT~~~~~~~ 97 (134)
T d1dcfa_ 25 GLLVHLGCEVT-TVSSNEECLRVVSHEHKVVFMDVCMPG------VENYQIALRIHEKFTKQRHQRPLLVALSGNTDKST 97 (134)
T ss_dssp HHHHHTTCEEE-EESSHHHHHHHCCTTCSEEEEECCSST------TTTTHHHHHHHHHHC-CCSCCCEEEEEESCCSHHH
T ss_pred HHHHHCCCEEE-EECCHHHHHHHhhcCCCeEEEEeccCC------CchHHHHHHHHHhcccccCCCCeEEEEeCCCCHHH
Confidence 44677888765 678888998887778999998532111 1225677777754321 2478887677768899
Q ss_pred HHHHHHcCcceeee
Q 020013 181 YVAALSLGAQGICL 194 (332)
Q Consensus 181 v~~al~~GA~gV~~ 194 (332)
..+++.+|++++..
T Consensus 98 ~~~~~~~G~~~~l~ 111 (134)
T d1dcfa_ 98 KEKCMSFGLDGVLL 111 (134)
T ss_dssp HHHHHHTTCCEEEE
T ss_pred HHHHHHcCCCEEEE
Confidence 99999999998763
|
| >d2cu0a1 c.1.5.1 (A:3-96,A:207-480) Inosine monophosphate dehydrogenase (IMPDH) {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Inosine monophosphate dehydrogenase (IMPDH) family: Inosine monophosphate dehydrogenase (IMPDH) domain: Inosine monophosphate dehydrogenase (IMPDH) species: Pyrococcus horikoshii [TaxId: 53953]
Probab=92.93 E-value=0.098 Score=46.64 Aligned_cols=66 Identities=23% Similarity=0.279 Sum_probs=47.6
Q ss_pred CHHHHHHHHHcCCCEEEEecCCCCcccCCCCchhhhHHHHHHHhCCCCCcEEeecCcCCHHHHHHHHHcCcceeeec
Q 020013 119 SFDEARKAVNAGVDAIIVQGREAGGHVIGQDGLISLLPMVVDLIGDRDIPIIAAGGIVDARGYVAALSLGAQGICLG 195 (332)
Q Consensus 119 s~~~a~~a~~~g~D~ivv~G~eaGGh~~~~~~~~~ll~~i~~~~~~~~iPviaaGGI~~~~~v~~al~~GA~gV~~G 195 (332)
..+.+....++|+|.|+++... ||. ......++++++.+ ++|||+ |+|.|++.+... +|||+|-+|
T Consensus 117 ~~~r~~~l~~aGvd~ivID~A~--Gh~---~~~i~~lK~ir~~~---~~~vIa-GNVaT~e~~~~l--~gaD~VkVG 182 (368)
T d2cu0a1 117 DIKRAIELDKAGVDVIVVDTAH--AHN---LKAIKSMKEMRQKV---DADFIV-GNIANPKAVDDL--TFADAVKVG 182 (368)
T ss_dssp CHHHHHHHHHTTCSEEEEECSC--CCC---HHHHHHHHHHHHTC---CSEEEE-EEECCHHHHTTC--TTSSEEEEC
T ss_pred HHHHHHHHHHcCCCEEEecCcc--cch---hhhhhhhhhhhhhc---ccceee-ccccCHHHHHhh--hcCcceeec
Confidence 5566777889999999998652 343 23355567777665 688876 999999887543 589988775
|
| >d1ys7a2 c.23.1.1 (A:7-127) Transcriptional regulatory protein PrrA, N-terminal domain {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Flavodoxin-like superfamily: CheY-like family: CheY-related domain: Transcriptional regulatory protein PrrA, N-terminal domain species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=92.84 E-value=0.13 Score=37.99 Aligned_cols=83 Identities=19% Similarity=0.179 Sum_probs=61.1
Q ss_pred HHHHHHhCCCEEEEecCCHHHHHHHH-HcCCCEEEEecCCCCcccCCCCchhhhHHHHHHHhCCCCCcEEeecCcCCHHH
Q 020013 102 LVLEAHSAGVKVVPQVGSFDEARKAV-NAGVDAIIVQGREAGGHVIGQDGLISLLPMVVDLIGDRDIPIIAAGGIVDARG 180 (332)
Q Consensus 102 ~i~~~~~~g~~v~~~v~s~~~a~~a~-~~g~D~ivv~G~eaGGh~~~~~~~~~ll~~i~~~~~~~~iPviaaGGI~~~~~ 180 (332)
+.+.++..|..|. .+.+.++|.... +..+|.|++.=.-- ....+.++.++++... ++|||.-.+-.+.++
T Consensus 17 l~~~L~~~g~~v~-~a~~~~eal~~~~~~~~dlvl~D~~mP------~~~G~el~~~ir~~~~--~~piI~lt~~~~~~~ 87 (121)
T d1ys7a2 17 LERGLRLSGFEVA-TAVDGAEALRSATENRPDAIVLDINMP------VLDGVSVVTALRAMDN--DVPVCVLSARSSVDD 87 (121)
T ss_dssp HHHHHHHTTCEEE-EESSHHHHHHHHHHSCCSEEEEESSCS------SSCHHHHHHHHHHTTC--CCCEEEEECCCTTTC
T ss_pred HHHHHHHCCCEEE-EECCHHHHHHHHHhCCCCEEEEEeecc------CcccHHHHHHHHhcCC--CCEEEEEEeeCCHHH
Confidence 3455677888876 567777776654 56799999853211 1234778888887543 799999899989999
Q ss_pred HHHHHHcCcceee
Q 020013 181 YVAALSLGAQGIC 193 (332)
Q Consensus 181 v~~al~~GA~gV~ 193 (332)
..+++.+||++..
T Consensus 88 ~~~a~~~Ga~dyl 100 (121)
T d1ys7a2 88 RVAGLEAGADDYL 100 (121)
T ss_dssp CCTTTTTTCSEEE
T ss_pred HHHHHHCCCCEEE
Confidence 9999999999865
|
| >d1qkka_ c.23.1.1 (A:) Transcriptional regulatory protein DctD, receiver domain {Sinorhizobium meliloti [TaxId: 382]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Flavodoxin-like superfamily: CheY-like family: CheY-related domain: Transcriptional regulatory protein DctD, receiver domain species: Sinorhizobium meliloti [TaxId: 382]
Probab=92.81 E-value=0.26 Score=37.17 Aligned_cols=82 Identities=24% Similarity=0.212 Sum_probs=60.1
Q ss_pred HHHHhCCCEEEEecCCHHHHHHHHH-cCCCEEEEecCCCCcccCCCCchhhhHHHHHHHhCCCCCcEEeecCcCCHHHHH
Q 020013 104 LEAHSAGVKVVPQVGSFDEARKAVN-AGVDAIIVQGREAGGHVIGQDGLISLLPMVVDLIGDRDIPIIAAGGIVDARGYV 182 (332)
Q Consensus 104 ~~~~~~g~~v~~~v~s~~~a~~a~~-~g~D~ivv~G~eaGGh~~~~~~~~~ll~~i~~~~~~~~iPviaaGGI~~~~~v~ 182 (332)
+.++..|..+. .+.+.++|....+ .-+|.|+++=. ..+ ...+.++.++++..+ ++|||.-.|-.+.+.+.
T Consensus 18 ~~L~~~g~~v~-~~~~~~~al~~l~~~~~dlil~D~~-mP~-----~~G~el~~~lr~~~~--~~pvI~lT~~~~~~~~~ 88 (140)
T d1qkka_ 18 QTLELAGFTVS-SFASATEALAGLSADFAGIVISDIR-MPG-----MDGLALFRKILALDP--DLPMILVTGHGDIPMAV 88 (140)
T ss_dssp HHHHHTTCEEE-EESCHHHHHHTCCTTCCSEEEEESC-CSS-----SCHHHHHHHHHHHCT--TSCEEEEECGGGHHHHH
T ss_pred HHHHHCCCEEE-EeCChHHHHHHHhccCcchHHHhhc-cCC-----CCHHHHHHHHHHhCC--CCcEEEEECCCCHHHHH
Confidence 34566787765 4578888876654 46999888532 111 234778888887543 79999999999999999
Q ss_pred HHHHcCcceeee
Q 020013 183 AALSLGAQGICL 194 (332)
Q Consensus 183 ~al~~GA~gV~~ 194 (332)
+++.+||+....
T Consensus 89 ~a~~~Ga~dyl~ 100 (140)
T d1qkka_ 89 QAIQDGAYDFIA 100 (140)
T ss_dssp HHHHTTCCEEEE
T ss_pred HHHHcCCCEeec
Confidence 999999987764
|
| >d1kgsa2 c.23.1.1 (A:2-123) PhoB receiver domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Flavodoxin-like superfamily: CheY-like family: CheY-related domain: PhoB receiver domain species: Thermotoga maritima [TaxId: 2336]
Probab=92.64 E-value=0.33 Score=35.54 Aligned_cols=83 Identities=14% Similarity=0.061 Sum_probs=60.5
Q ss_pred HHHHHhCCCEEEEecCCHHHHHHHH-HcCCCEEEEecCCCCcccCCCCchhhhHHHHHHHhCCCCCcEEeecCcCCHHHH
Q 020013 103 VLEAHSAGVKVVPQVGSFDEARKAV-NAGVDAIIVQGREAGGHVIGQDGLISLLPMVVDLIGDRDIPIIAAGGIVDARGY 181 (332)
Q Consensus 103 i~~~~~~g~~v~~~v~s~~~a~~a~-~~g~D~ivv~G~eaGGh~~~~~~~~~ll~~i~~~~~~~~iPviaaGGI~~~~~v 181 (332)
.+.++..|..|. .+.+.++|.... +..+|.|++.-.-.+ ...+.++.++++.. ..+|+|.-.+-.+.++.
T Consensus 18 ~~~L~~~g~~v~-~a~~~~~al~~l~~~~~dlillD~~mp~------~~g~~~~~~lr~~~--~~~piI~lt~~~~~~~~ 88 (122)
T d1kgsa2 18 TEALKKEMFTVD-VCYDGEEGMYMALNEPFDVVILDIMLPV------HDGWEILKSMRESG--VNTPVLMLTALSDVEYR 88 (122)
T ss_dssp HHHHHHTTCEEE-EESSHHHHHHHHHHSCCSEEEEESCCSS------SCHHHHHHHHHHTT--CCCCEEEEESSCHHHHH
T ss_pred HHHHHHCCCEEE-EEcchHHHHHHHHhhCcccccccccccc------chhHHHHHHHHhcC--CCCcEEEEcCCCCHHHH
Confidence 345667788866 577888877554 567999998633111 23467777777643 26899999999899999
Q ss_pred HHHHHcCcceeee
Q 020013 182 VAALSLGAQGICL 194 (332)
Q Consensus 182 ~~al~~GA~gV~~ 194 (332)
.+++.+||++...
T Consensus 89 ~~~~~~Ga~~yl~ 101 (122)
T d1kgsa2 89 VKGLNMGADDYLP 101 (122)
T ss_dssp HHTCCCCCSEEEE
T ss_pred HHHHHcCCceeec
Confidence 9999999998664
|
| >d1zgza1 c.23.1.1 (A:2-121) TorCAD operon transcriptional regulator TorD, N-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Flavodoxin-like superfamily: CheY-like family: CheY-related domain: TorCAD operon transcriptional regulator TorD, N-terminal domain species: Escherichia coli [TaxId: 562]
Probab=92.61 E-value=0.67 Score=33.57 Aligned_cols=82 Identities=20% Similarity=0.160 Sum_probs=58.4
Q ss_pred HHHHHhCCCEEEEecCCHHHHHHHH-HcCCCEEEEecCCCCcccCCCCchhhhHHHHHHHhCCCCCcEEeecCcCCHHHH
Q 020013 103 VLEAHSAGVKVVPQVGSFDEARKAV-NAGVDAIIVQGREAGGHVIGQDGLISLLPMVVDLIGDRDIPIIAAGGIVDARGY 181 (332)
Q Consensus 103 i~~~~~~g~~v~~~v~s~~~a~~a~-~~g~D~ivv~G~eaGGh~~~~~~~~~ll~~i~~~~~~~~iPviaaGGI~~~~~v 181 (332)
...+++.|..|. .+.+.+++.... +..+|.|++.=.-.++ ..+.+++.++... .+|||.-.+-.+.++.
T Consensus 18 ~~~L~~~g~~v~-~a~~~~~a~~~~~~~~~dliilD~~mp~~------~g~~~~~~~~~~~---~~piI~lt~~~~~~~~ 87 (120)
T d1zgza1 18 QSYFTQEGYTVS-VTASGAGLREIMQNQSVDLILLDINLPDE------NGLMLTRALRERS---TVGIILVTGRSDRIDR 87 (120)
T ss_dssp HHHHHHTTCEEE-EESSHHHHHHHHHHSCCSEEEEESCCSSS------CHHHHHHHHHTTC---CCEEEEEESSCCHHHH
T ss_pred HHHHHHCCCEEE-EECCHHHHHHHHHhcCCCEEeeehhhccc------hhHHHHHHHhccC---CCeEEEEEccCCHHHH
Confidence 345667888765 577888877665 5679999985432111 2355666655433 6899998888899999
Q ss_pred HHHHHcCcceeee
Q 020013 182 VAALSLGAQGICL 194 (332)
Q Consensus 182 ~~al~~GA~gV~~ 194 (332)
.+++.+||+....
T Consensus 88 ~~a~~~Ga~dyl~ 100 (120)
T d1zgza1 88 IVGLEMGADDYVT 100 (120)
T ss_dssp HHHHHHTCSEEEE
T ss_pred HHHHHCCCCEEEE
Confidence 9999999998764
|
| >d1geqa_ c.1.2.4 (A:) Trp synthase alpha-subunit {Archaeon Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Ribulose-phoshate binding barrel family: Tryptophan biosynthesis enzymes domain: Trp synthase alpha-subunit species: Archaeon Pyrococcus furiosus [TaxId: 2261]
Probab=92.15 E-value=1.1 Score=37.20 Aligned_cols=108 Identities=17% Similarity=0.177 Sum_probs=73.3
Q ss_pred HHHHHHHHhCCCceeecCCCCCCHHHHHHHHHHHHhhcCCcEEEEeecCCCCHHHHHHHHhcCCcEEEEc--cCC-----
Q 020013 25 PELVAAVANAGGLGLLRAPDWEAPDYLRDLIRKTRSLTERPFGVGVVLAFPHNENIKAILSEKVAVLQVS--WGE----- 97 (332)
Q Consensus 25 ~~la~avs~aGglG~i~~~~~~~~e~~~~~i~~~r~~~~~p~gvnl~~~~~~~~~~~~~~~~~~~~I~~~--~g~----- 97 (332)
.+++...+++|.-|+|.. . .++|+..+....+++. + .--+-++.+...++.++.+.+..-.+|-+- .|.
T Consensus 98 ~~f~~~~~~~Gv~Gliip-D-LP~eE~~~~~~~~~~~-g-l~~I~lvaPtt~~~ri~~i~~~s~gFiY~vs~~GvTG~~~ 173 (248)
T d1geqa_ 98 RNFLAEAKASGVDGILVV-D-LPVFHAKEFTEIAREE-G-IKTVFLAAPNTPDERLKVIDDMTTGFVYLVSLYGTTGARE 173 (248)
T ss_dssp HHHHHHHHHHTCCEEEET-T-CCGGGHHHHHHHHHHH-T-CEEEEEECTTCCHHHHHHHHHHCSSEEEEECCC-------
T ss_pred HHHhhhhcccCeeEEecc-C-CcHHHHHHHHhhcccc-C-cceEEEecccchhHHHHHHHhcCCCeEEEEecccccccch
Confidence 578899999999999976 3 4677766666666653 2 233455555555778877777666666431 111
Q ss_pred -Cc---HHHHHHHHhC-CCEEEE--ecCCHHHHHHHHHcCCCEEEE
Q 020013 98 -YS---EELVLEAHSA-GVKVVP--QVGSFDEARKAVNAGVDAIIV 136 (332)
Q Consensus 98 -~~---~~~i~~~~~~-g~~v~~--~v~s~~~a~~a~~~g~D~ivv 136 (332)
.+ .+.++++|+. ..++.. .+.++++++++.+.++|++|+
T Consensus 174 ~~~~~~~~~v~~vk~~t~~Pv~vGFGI~~~e~v~~~~~~~ADGvIV 219 (248)
T d1geqa_ 174 EIPKTAYDLLRRAKRICRNKVAVGFGVSKREHVVSLLKEGANGVVV 219 (248)
T ss_dssp CCCHHHHHHHHHHHHHCSSCEEEESCCCSHHHHHHHHHTTCSEEEE
T ss_pred hhhhhHHHHHHHHhhhcccceeeecccCCHHHHHHHHhcCCCEEEE
Confidence 12 3566777764 556654 467999999999999999999
|
| >d1qopa_ c.1.2.4 (A:) Trp synthase alpha-subunit {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Ribulose-phoshate binding barrel family: Tryptophan biosynthesis enzymes domain: Trp synthase alpha-subunit species: Salmonella typhimurium [TaxId: 90371]
Probab=91.95 E-value=1.2 Score=37.29 Aligned_cols=108 Identities=14% Similarity=0.076 Sum_probs=73.3
Q ss_pred HHHHHHHHhCCCceeecCCCCCCHHHHHHHHHHHHhhcCCcEEEEeecCCCCHHHHHHHHhcCCcEEEE-c-cC------
Q 020013 25 PELVAAVANAGGLGLLRAPDWEAPDYLRDLIRKTRSLTERPFGVGVVLAFPHNENIKAILSEKVAVLQV-S-WG------ 96 (332)
Q Consensus 25 ~~la~avs~aGglG~i~~~~~~~~e~~~~~i~~~r~~~~~p~gvnl~~~~~~~~~~~~~~~~~~~~I~~-~-~g------ 96 (332)
..++...+++|.-|+|.. . .++|+..+..+.+++. +. --+.++.+....+.++.+.+..-.+|-+ + .|
T Consensus 112 ~~f~~~~~~~Gv~Gliip-D-lP~ee~~~~~~~~~~~-~l-~~I~lvaPtt~~~Ri~~i~~~a~gFiY~vs~~GvTG~~~ 187 (267)
T d1qopa_ 112 DAFYARCEQVGVDSVLVA-D-VPVEESAPFRQAALRH-NI-APIFICPPNADDDLLRQVASYGRGYTYLLSRSGVTGAEN 187 (267)
T ss_dssp HHHHHHHHHHTCCEEEET-T-CCGGGCHHHHHHHHHT-TC-EEECEECTTCCHHHHHHHHHHCCSCEEEESSSSCCCSSS
T ss_pred hHHHHHHHhcCCCceecc-c-hhhhhhHHHHHhhhcc-Cc-eEEEEecccccHHHHHHHHhhCchhhhhhcccccCCccc
Confidence 578888999999999976 3 4666655555555543 22 2344555555577888888766666632 1 12
Q ss_pred ---CCcHHHHHHHHhC-CCEEEE--ecCCHHHHHHHHHcCCCEEEE
Q 020013 97 ---EYSEELVLEAHSA-GVKVVP--QVGSFDEARKAVNAGVDAIIV 136 (332)
Q Consensus 97 ---~~~~~~i~~~~~~-g~~v~~--~v~s~~~a~~a~~~g~D~ivv 136 (332)
....++++++|+. .++++. .+.+++++..+.+.++|++|+
T Consensus 188 ~~~~~~~~~i~~ik~~t~~Pv~vGFGI~~~e~v~~~~~~~ADGvIV 233 (267)
T d1qopa_ 188 RGALPLHHLIEKLKEYHAAPALQGFGISSPEQVSAAVRAGAAGAIS 233 (267)
T ss_dssp CC--CCHHHHHHHHHTTCCCEEEESSCCSHHHHHHHHHTTCSEEEE
T ss_pred ccchhHHHHHHHHhhhccCCceeecccCCHHHHHHHHhcCCCEEEE
Confidence 1235778888874 666654 577999999999999999999
|
| >d1a04a2 c.23.1.1 (A:5-142) Nitrate/nitrite response regulator (NarL), receiver domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Flavodoxin-like superfamily: CheY-like family: CheY-related domain: Nitrate/nitrite response regulator (NarL), receiver domain species: Escherichia coli [TaxId: 562]
Probab=91.74 E-value=0.6 Score=34.78 Aligned_cols=77 Identities=18% Similarity=0.128 Sum_probs=56.8
Q ss_pred CCEEEEecCCHHHHHHH-HHcCCCEEEEecCCCCcccCCCCchhhhHHHHHHHhCCCCCcEEeecCcCCHHHHHHHHHcC
Q 020013 110 GVKVVPQVGSFDEARKA-VNAGVDAIIVQGREAGGHVIGQDGLISLLPMVVDLIGDRDIPIIAAGGIVDARGYVAALSLG 188 (332)
Q Consensus 110 g~~v~~~v~s~~~a~~a-~~~g~D~ivv~G~eaGGh~~~~~~~~~ll~~i~~~~~~~~iPviaaGGI~~~~~v~~al~~G 188 (332)
+..++..+.+.+++... .+..+|.|+++=.-.+ ...+.+++++++... ++|++.-.+-.+.+.+.+++.+|
T Consensus 27 ~~~~v~~a~~~~~al~~~~~~~~DlvllD~~mP~------~~G~el~~~ir~~~~--~~~vivlt~~~~~~~~~~a~~~G 98 (138)
T d1a04a2 27 DITVVGEASNGEQGIELAESLDPDLILLDLNMPG------MNGLETLDKLREKSL--SGRIVVFSVSNHEEDVVTALKRG 98 (138)
T ss_dssp TEEEEEEESSHHHHHHHHHHHCCSEEEEETTSTT------SCHHHHHHHHHHSCC--CSEEEEEECCCCHHHHHHHHHTT
T ss_pred CcEEEEEECCHHHHHHHHHhcCCCEEEEecCCCC------CCHHHHHHHHHhhCC--CCCEEEEEEECCHHHHHHHHHcC
Confidence 34667778888887765 4557999998532111 234788888887543 67888878888999999999999
Q ss_pred cceeee
Q 020013 189 AQGICL 194 (332)
Q Consensus 189 A~gV~~ 194 (332)
|++...
T Consensus 99 a~~yl~ 104 (138)
T d1a04a2 99 ADGYLL 104 (138)
T ss_dssp CSEEEE
T ss_pred CCEEEE
Confidence 998763
|
| >d1q45a_ c.1.4.1 (A:) 12-oxophytodienoate reductase (OPR, OYE homolog) {Thale cress (Arabidopsis thaliana), OPR3 [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: FMN-linked oxidoreductases family: FMN-linked oxidoreductases domain: 12-oxophytodienoate reductase (OPR, OYE homolog) species: Thale cress (Arabidopsis thaliana), OPR3 [TaxId: 3702]
Probab=91.70 E-value=0.081 Score=47.34 Aligned_cols=48 Identities=19% Similarity=0.301 Sum_probs=40.5
Q ss_pred hhhHHHHHHHhCCCCCcEEeecCcCCHHHHHHHHHcC-cceeeeccccccCcc
Q 020013 152 ISLLPMVVDLIGDRDIPIIAAGGIVDARGYVAALSLG-AQGICLGTRFVASEE 203 (332)
Q Consensus 152 ~~ll~~i~~~~~~~~iPviaaGGI~~~~~v~~al~~G-A~gV~~GT~fl~t~E 203 (332)
..+...+++.+ ++||++.||+ +++.+.++++.| ||.|.||..|++.++
T Consensus 296 ~~~~~~ik~~~---~~pv~~~Gg~-~~~~ae~~l~~G~~DlV~~gR~liaDPd 344 (380)
T d1q45a_ 296 AKLMKSLRMAY---NGTFMSSGGF-NKELGMQAVQQGDADLVSYGRLFIANPD 344 (380)
T ss_dssp HHHHHHHHHHS---CSCEEEESSC-CHHHHHHHHHTTSCSEEEESHHHHHCTT
T ss_pred HHHHHHHhhcc---CCcEEeCCCC-CHHHHHHHHHcCCccchhhhHHHHHCcc
Confidence 33455666665 7999999999 899999999998 999999999998865
|
| >d1muma_ c.1.12.7 (A:) 2-methylisocitrate lyase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Phosphoenolpyruvate/pyruvate domain family: Phosphoenolpyruvate mutase/Isocitrate lyase-like domain: 2-methylisocitrate lyase species: Escherichia coli [TaxId: 562]
Probab=91.60 E-value=0.58 Score=39.91 Aligned_cols=93 Identities=17% Similarity=0.204 Sum_probs=63.9
Q ss_pred HHHHHHhCCCEEEEecCCHHHHHHHHHcCCCEEEEecCCC--C--cccCCC-Cc---hhhhHHHHHHHhCCCCCcEEeec
Q 020013 102 LVLEAHSAGVKVVPQVGSFDEARKAVNAGVDAIIVQGREA--G--GHVIGQ-DG---LISLLPMVVDLIGDRDIPIIAAG 173 (332)
Q Consensus 102 ~i~~~~~~g~~v~~~v~s~~~a~~a~~~g~D~ivv~G~ea--G--Gh~~~~-~~---~~~ll~~i~~~~~~~~iPviaaG 173 (332)
+-+.++..+..+++.+.+.-.|+.+++.|.+++.+.|+.. . |..+.. .+ ....+..|.+.+ ++||++.+
T Consensus 8 lr~ll~~~~~~~~~~~~D~~sA~~~e~~Gf~a~~~sg~~~sa~~~G~pD~~~~~~~e~~~~~~~i~~a~---~~Pvi~D~ 84 (289)
T d1muma_ 8 FRAALTKENPLQIVGTINANHALLAQRAGYQAIYLSGGGVAAGSLGLPDLGISTLDDVLTDIRRITDVC---SLPLLVDA 84 (289)
T ss_dssp HHHHHHHCSSEEEEECSSHHHHHHHHHTTCSCEEECHHHHHHTTSCCCSSSCCCHHHHHHHHHHHHHHC---CSCEEEEC
T ss_pred HHHHHhCCCCEEeecCCCHHHHHHHHHcCCCEEEhhHHHHHHHccCCCCCCCCChHHHHHHHHHHhccc---CCCeeecc
Confidence 4444555678889999999999999999999999977632 1 222211 12 244456666666 89999875
Q ss_pred Cc--CC-HH----HHHHHHHcCcceeeeccc
Q 020013 174 GI--VD-AR----GYVAALSLGAQGICLGTR 197 (332)
Q Consensus 174 GI--~~-~~----~v~~al~~GA~gV~~GT~ 197 (332)
.= ++ +. .+..+..+|+.|+.+=-.
T Consensus 85 d~GyG~~~~~v~~~v~~~~~aGvagi~iEDq 115 (289)
T d1muma_ 85 DIGFGSSAFNVARTVKSMIKAGAAGLHIEDQ 115 (289)
T ss_dssp TTCSSSSHHHHHHHHHHHHHHTCSEEEEECB
T ss_pred cccccccchHHHHHHHHHHHCCCCEEEecCc
Confidence 33 33 43 456677799999988544
|
| >d1km4a_ c.1.2.3 (A:) Orotidine 5'-monophosphate decarboxylase (OMP decarboxylase) {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Ribulose-phoshate binding barrel family: Decarboxylase domain: Orotidine 5'-monophosphate decarboxylase (OMP decarboxylase) species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]
Probab=91.50 E-value=1.9 Score=34.53 Aligned_cols=134 Identities=18% Similarity=0.135 Sum_probs=73.9
Q ss_pred HHHHHHhhcCCcEEEEeecCCC-C--HHHHHHHHhcCCcEEEEccCCCcHHHHHH----HHhCCCEEEEe--cCC-----
Q 020013 54 LIRKTRSLTERPFGVGVVLAFP-H--NENIKAILSEKVAVLQVSWGEYSEELVLE----AHSAGVKVVPQ--VGS----- 119 (332)
Q Consensus 54 ~i~~~r~~~~~p~gvnl~~~~~-~--~~~~~~~~~~~~~~I~~~~g~~~~~~i~~----~~~~g~~v~~~--v~s----- 119 (332)
.++++++..+.++-..+-..+- . ...++.+.+.++|++.+|. ....+.++. .++.+..++.. .++
T Consensus 45 ~v~~l~~~~~~~i~~D~K~~DIg~t~~~~~~~~~~~gad~~TVh~-~~g~~~i~~~~~~a~~~~~~~~~l~~~s~~~~~~ 123 (212)
T d1km4a_ 45 IIAEFRKRFGCRIIADFAVADIPETNEKICRATFKAGADAIIVHG-FPGADSVRACLNVAEEMGREVFLLTEMSHPGAEM 123 (212)
T ss_dssp HHHHHHHHHCCEEEEEEEECSCHHHHHHHHHHHHHTTCSEEEEES-TTCHHHHHHHHHHHHHHTCEEEEECSCSSGGGGT
T ss_pred HHHHHHHhcccceehhhhhhccccHHHHhHhhhccccccEEEEec-cCChHHHHHHHHHHHhcCCccccchhhcchhhhh
Confidence 3455555444444344333321 1 3445667788999999983 333444443 34456665532 221
Q ss_pred -----HHH-HHHHHHcCCCEEEEecCCCCcccCCCCchhhhHHHHHHHhCCCCCcEEeecCcCCH-HHHHHHHHcCccee
Q 020013 120 -----FDE-ARKAVNAGVDAIIVQGREAGGHVIGQDGLISLLPMVVDLIGDRDIPIIAAGGIVDA-RGYVAALSLGAQGI 192 (332)
Q Consensus 120 -----~~~-a~~a~~~g~D~ivv~G~eaGGh~~~~~~~~~ll~~i~~~~~~~~iPviaaGGI~~~-~~v~~al~~GA~gV 192 (332)
.++ .+.+.+.|.+.++. +.. ....+..+++..+ +-.++.++||+-. .+..+.+ .|||.+
T Consensus 124 ~~~~~~~~~~~~~~~~g~~g~v~------~~~-----~~~~i~~ir~~~~--~~~~~vtpGI~~~g~~~~d~~-~~ad~i 189 (212)
T d1km4a_ 124 FIQGAADEIARMGVDLGVKNYVG------PST-----RPERLSRLREIIG--QDSFLISPGVGAQGGDPGETL-RFADAI 189 (212)
T ss_dssp THHHHHHHHHHHHHHHTCCEEEC------CTT-----CHHHHHHHHHHHC--SSSEEEECCBSTTSBCHHHHT-TTCSEE
T ss_pred hhhhHHHHHHHHHHHhCCccccc------ccc-----CHHHHhhhhhccC--CceeEEcCccccCCCCHHHHH-hhCCEE
Confidence 111 23456778887764 211 1234456666553 3567789999532 2333333 489999
Q ss_pred eeccccccCc
Q 020013 193 CLGTRFVASE 202 (332)
Q Consensus 193 ~~GT~fl~t~ 202 (332)
++|+++..++
T Consensus 190 IvGR~I~~a~ 199 (212)
T d1km4a_ 190 IVGRSIYLAD 199 (212)
T ss_dssp EECHHHHTSS
T ss_pred EECchhccCC
Confidence 9999988664
|
| >d1pvna1 c.1.5.1 (A:2-99,A:231-494) Inosine monophosphate dehydrogenase (IMPDH) {Tritrichomonas foetus [TaxId: 5724]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Inosine monophosphate dehydrogenase (IMPDH) family: Inosine monophosphate dehydrogenase (IMPDH) domain: Inosine monophosphate dehydrogenase (IMPDH) species: Tritrichomonas foetus [TaxId: 5724]
Probab=91.44 E-value=0.15 Score=45.30 Aligned_cols=69 Identities=25% Similarity=0.389 Sum_probs=49.6
Q ss_pred HHHHHHHHHcCCCEEEEecCCCCcccCCCCchhhhHHHHHHHhCCCCCcEEeecCcCCHHHHHHHHHcCcceeeec
Q 020013 120 FDEARKAVNAGVDAIIVQGREAGGHVIGQDGLISLLPMVVDLIGDRDIPIIAAGGIVDARGYVAALSLGAQGICLG 195 (332)
Q Consensus 120 ~~~a~~a~~~g~D~ivv~G~eaGGh~~~~~~~~~ll~~i~~~~~~~~iPviaaGGI~~~~~v~~al~~GA~gV~~G 195 (332)
.+.+....++|+|+++++.. -||. ......+..+++.... ++|| .+|.|.|++.+..++.+|||+|-+|
T Consensus 112 ~~~~~~L~~ag~d~i~IDvA--hG~~---~~v~~~i~~ir~~~~~-~~~I-iAGNVaT~e~~~~L~~aGaD~vkVG 180 (362)
T d1pvna1 112 RERVPALVEAGADVLCIDSS--DGFS---EWQKITIGWIREKYGD-KVKV-GAGNIVDGEGFRYLADAGADFIKIG 180 (362)
T ss_dssp HHHHHHHHHHTCSEEEECCS--CCCB---HHHHHHHHHHHHHHGG-GSCE-EEEEECSHHHHHHHHHHTCSEEEEC
T ss_pred HHHHHHHhhcCceEEeechh--ccch---hHHHHHHHHHHHhhcc-ceee-ecccccCHHHHHHHHHhCCcEEEec
Confidence 45566778899999999754 2443 1234556666554421 3555 4699999999999999999999987
|
| >d1hl2a_ c.1.10.1 (A:) N-acetylneuraminate lyase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Aldolase family: Class I aldolase domain: N-acetylneuraminate lyase species: Escherichia coli [TaxId: 562]
Probab=91.05 E-value=0.2 Score=42.83 Aligned_cols=123 Identities=17% Similarity=0.178 Sum_probs=67.3
Q ss_pred HHHHHHHcCCCEEEEecCCCCcccCCCCchhhhHHHHHHHhCCCCCcEEeecCcCCHHHHH----HHHHcCcceeeeccc
Q 020013 122 EARKAVNAGVDAIIVQGREAGGHVIGQDGLISLLPMVVDLIGDRDIPIIAAGGIVDARGYV----AALSLGAQGICLGTR 197 (332)
Q Consensus 122 ~a~~a~~~g~D~ivv~G~eaGGh~~~~~~~~~ll~~i~~~~~~~~iPviaaGGI~~~~~v~----~al~~GA~gV~~GT~ 197 (332)
.+....+.|+++|++-|..+-++.-....-..++..+++.... ++|+|+.-|=.+.+++. .+-.+|||++++-..
T Consensus 28 ~i~~l~~~Gv~gi~~~G~tGE~~~Ls~eEr~~l~~~~~~~~~~-~~pvi~gv~~~s~~~~i~~a~~a~~~Gad~~~v~~p 106 (295)
T d1hl2a_ 28 LVQFNIQQGIDGLYVGGSTGEAFVQSLSEREQVLEIVAEEAKG-KIKLIAHVGCVSTAESQQLAASAKRYGFDAVSAVTP 106 (295)
T ss_dssp HHHHHHHHTCSEEEESSGGGTGGGSCHHHHHHHHHHHHHHHTT-TSEEEEECCCSSHHHHHHHHHHHHHHTCSEEEEECC
T ss_pred HHHHHHHcCCCEEEECeEccchhhCCHHHHHHHHhhhHHhhcc-ccceeeccccchhhHHHHHHHHHHhcCCceeeeeec
Confidence 3455678899999995543323221111224456666666643 68888743333455543 334589999999888
Q ss_pred cccC-ccCCCCHHHHHHHhcCCCceEEEEecccCCCCCCceeecChHHHhhhc
Q 020013 198 FVAS-EESYAHPEYKRKLVEMDKTEYTDVFGRARWPGAPHRVLQTPFFSNWKN 249 (332)
Q Consensus 198 fl~t-~Es~~~~~~k~~~~~~~~t~~t~~~~~~~~~g~~~R~l~n~~~~~~~~ 249 (332)
+... .+...-+.|++.+.++.+..+. ++. +|+..+..+......++.+
T Consensus 107 ~~~~~~~~~~~~~~~~~~~~~~~~~ii-~y~---~P~~~g~~l~~~~l~~L~~ 155 (295)
T d1hl2a_ 107 FYYPFSFEEHCDHYRAIIDSADGLPMV-VYN---IPARSGVKLTLDQINTLVT 155 (295)
T ss_dssp CSSCCCHHHHHHHHHHHHHHHTTSCEE-EEE---CHHHHCCCCCHHHHHHHHT
T ss_pred cccCCChHHHHHHHHHHhcccCcCccc-ccc---ccccccccccccccccccc
Confidence 7653 1222334566666656554322 333 1233334455566665543
|
| >d1ofda2 c.1.4.1 (A:431-1239) Alpha subunit of glutamate synthase, central and FMN domains {Synechocystis sp. [TaxId: 1143]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: FMN-linked oxidoreductases family: FMN-linked oxidoreductases domain: Alpha subunit of glutamate synthase, central and FMN domains species: Synechocystis sp. [TaxId: 1143]
Probab=90.89 E-value=1.9 Score=41.57 Aligned_cols=113 Identities=15% Similarity=0.102 Sum_probs=73.8
Q ss_pred cHHHHHHHHhCCCceeecCCC---CCCHHHHHHHHHHHHhhc-CCcEEEEeecCCCCHHHHHHHHhcCCcEEEEcc----
Q 020013 24 GPELVAAVANAGGLGLLRAPD---WEAPDYLRDLIRKTRSLT-ERPFGVGVVLAFPHNENIKAILSEKVAVLQVSW---- 95 (332)
Q Consensus 24 ~~~la~avs~aGglG~i~~~~---~~~~e~~~~~i~~~r~~~-~~p~gvnl~~~~~~~~~~~~~~~~~~~~I~~~~---- 95 (332)
+++.+..-.--=|...+..+. ..++|++.+.|.++|++. ..|++|.+............+.++++|+|.+..
T Consensus 555 t~~IA~~R~~~~G~~liSP~~h~diysiedL~q~I~~Lr~~~~~~pv~vKl~~~~g~~~ia~~vaka~aD~I~IdG~eGG 634 (809)
T d1ofda2 555 SEYIAMLRRSKPGVTLISPPPHHDIYSIEDLAQLIYDLHQINPEAQVSVKLVAEIGIGTIAAGVAKANADIIQISGHDGG 634 (809)
T ss_dssp CHHHHHHHTSCTTCCEECCSSCTTCSSHHHHHHHHHHHHHHCTTSEEEEEEECSTTHHHHHHHHHHTTCSEEEEECTTCC
T ss_pred CHHHHhhcCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHhCCCCceEEEEeeecChHHHHHHHhhcCCCEEEEeCCCCc
Confidence 455544332223677775432 457999999999999875 569999987654434444455678999999862
Q ss_pred ------------CCCcH----HHHHHHHhCC----CEEEE--ecCCHHHHHHHHHcCCCEEEE
Q 020013 96 ------------GEYSE----ELVLEAHSAG----VKVVP--QVGSFDEARKAVNAGVDAIIV 136 (332)
Q Consensus 96 ------------g~~~~----~~i~~~~~~g----~~v~~--~v~s~~~a~~a~~~g~D~ivv 136 (332)
|.|-. +..+.+.+.| ++++. .+.+..++.++...|||.+-+
T Consensus 635 TGAap~~~~~~~GlP~~~gl~~a~~~L~~~glR~~V~Lia~Ggl~t~~Dv~ka~aLGAD~v~~ 697 (809)
T d1ofda2 635 TGASPLSSIKHAGSPWELGVTEVHRVLMENQLRDRVLLRADGGLKTGWDVVMAALMGAEEYGF 697 (809)
T ss_dssp CSSEEHHHHHHBCCCHHHHHHHHHHHHHHTTCGGGCEEEEESSCCSHHHHHHHHHTTCSEEEC
T ss_pred cccccHHHHhcCCccHHHHHHHHHHHHHHcCCCCceEEEEeCCCCCHHHHHHHHHhCCCchhH
Confidence 22111 1123344444 55554 467899999999999999865
|
| >d1yxya1 c.1.2.5 (A:4-233) Putative N-acetylmannosamine-6-phosphate 2-epimerase NanE {Streptococcus pyogenes [TaxId: 1314]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Ribulose-phoshate binding barrel family: NanE-like domain: Putative N-acetylmannosamine-6-phosphate 2-epimerase NanE species: Streptococcus pyogenes [TaxId: 1314]
Probab=90.82 E-value=1.5 Score=35.09 Aligned_cols=111 Identities=16% Similarity=0.171 Sum_probs=66.3
Q ss_pred CcHHHHHHHHhCCC--ceeecCC-CCCCHHHHHHHHHHHHhhcCCcEEEEeecCCCCHHHHHHHHhcCCcEEEEcc-C--
Q 020013 23 SGPELVAAVANAGG--LGLLRAP-DWEAPDYLRDLIRKTRSLTERPFGVGVVLAFPHNENIKAILSEKVAVLQVSW-G-- 96 (332)
Q Consensus 23 s~~~la~avs~aGg--lG~i~~~-~~~~~e~~~~~i~~~r~~~~~p~gvnl~~~~~~~~~~~~~~~~~~~~I~~~~-g-- 96 (332)
...+.......+|. +.+.... .......+.+.++.++.....++... .....+..+.+.+.|+++|..+. +
T Consensus 86 ~~~~~~~~~~~~gad~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~---~v~t~~~a~~a~~~Gad~i~~~~~~~~ 162 (230)
T d1yxya1 86 ATMTEVDQLAALNIAVIAMDCTKRDRHDGLDIASFIRQVKEKYPNQLLMA---DISTFDEGLVAHQAGIDFVGTTLSGYT 162 (230)
T ss_dssp CSHHHHHHHHTTTCSEEEEECCSSCCTTCCCHHHHHHHHHHHCTTCEEEE---ECSSHHHHHHHHHTTCSEEECTTTTSS
T ss_pred hhHHHHHHHHhcCCCEEEEecccccccchhhHHHHHHHHHhcCCCceEec---CCCCHHHHHHHHhcCCCEEEeeccccc
Confidence 45566666666663 2222211 11122334556666665443333221 12235667788899999997642 1
Q ss_pred -------CCcHHHHHHHHhCCCEEEE--ecCCHHHHHHHHHcCCCEEEE
Q 020013 97 -------EYSEELVLEAHSAGVKVVP--QVGSFDEARKAVNAGVDAIIV 136 (332)
Q Consensus 97 -------~~~~~~i~~~~~~g~~v~~--~v~s~~~a~~a~~~g~D~ivv 136 (332)
.......+..+..+++++. .+.|.+++.++.+.|+|+|++
T Consensus 163 ~~~~~~~~~~~~~~~~~~~~~ipvia~GGI~t~~d~~~al~~GAd~V~v 211 (230)
T d1yxya1 163 PYSRQEAGPDVALIEALCKAGIAVIAEGKIHSPEEAKKINDLGVAGIVV 211 (230)
T ss_dssp TTSCCSSSCCHHHHHHHHHTTCCEEEESCCCSHHHHHHHHTTCCSEEEE
T ss_pred ccccccchHHHHHHHHHhcCCCeEEEeCCCCCHHHHHHHHHcCCCEEEE
Confidence 1122344455567888885 477999999999999999999
|
| >d1dz3a_ c.23.1.1 (A:) Sporulation response regulator Spo0A {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Flavodoxin-like superfamily: CheY-like family: CheY-related domain: Sporulation response regulator Spo0A species: Bacillus stearothermophilus [TaxId: 1422]
Probab=90.58 E-value=1.5 Score=31.82 Aligned_cols=82 Identities=12% Similarity=0.047 Sum_probs=57.6
Q ss_pred HHhCC-CEEEEecCCHHHHHHHH-HcCCCEEEEecCCCCcccCCCCchhhhHHHHHHHhCCCCCcEEeecCcCCHHHHHH
Q 020013 106 AHSAG-VKVVPQVGSFDEARKAV-NAGVDAIIVQGREAGGHVIGQDGLISLLPMVVDLIGDRDIPIIAAGGIVDARGYVA 183 (332)
Q Consensus 106 ~~~~g-~~v~~~v~s~~~a~~a~-~~g~D~ivv~G~eaGGh~~~~~~~~~ll~~i~~~~~~~~iPviaaGGI~~~~~v~~ 183 (332)
+...+ ..++..+.+.++|.... +..+|.|+++-.= .....+.+++++++... ...||+.-.+-.+.+...+
T Consensus 21 L~~~~~~~~v~~a~~g~~al~~~~~~~~dlillD~~m------P~~dG~e~~~~ir~~~~-~~~~ii~~t~~~~~~~~~~ 93 (123)
T d1dz3a_ 21 ISSQPDMEVIGTAYNGQDCLQMLEEKRPDILLLDIIM------PHLDGLAVLERIRAGFE-HQPNVIMLTAFGQEDVTKK 93 (123)
T ss_dssp HHTSTTEEEEEEESSHHHHHHHHHHHCCSEEEEESCC------SSSCHHHHHHHHHHHCS-SCCEEEEEEETTCHHHHHH
T ss_pred HHhCCCcEEEEEECCHHHHHHHHHhcCCCEEEEcCCC------CCCCHHHHHHHHHhcCC-CCCeEEEEECcCCHHHHHH
Confidence 33343 56677788888887654 4579999985321 11234778888886543 2457888788878899999
Q ss_pred HHHcCcceeee
Q 020013 184 ALSLGAQGICL 194 (332)
Q Consensus 184 al~~GA~gV~~ 194 (332)
++.+||++...
T Consensus 94 a~~~Ga~~~l~ 104 (123)
T d1dz3a_ 94 AVELGASYFIL 104 (123)
T ss_dssp HHHTTCEEEEE
T ss_pred HHHCCCCEEEE
Confidence 99999998753
|
| >d1s2wa_ c.1.12.7 (A:) Phosphoenolpyruvate mutase {Blue mussel (Mytilus edulis) [TaxId: 6550]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Phosphoenolpyruvate/pyruvate domain family: Phosphoenolpyruvate mutase/Isocitrate lyase-like domain: Phosphoenolpyruvate mutase species: Blue mussel (Mytilus edulis) [TaxId: 6550]
Probab=90.53 E-value=0.52 Score=39.89 Aligned_cols=90 Identities=20% Similarity=0.243 Sum_probs=59.5
Q ss_pred HHHhCCCEEEEecCCHHHHHHHHHcCCCEEEEecCCC---CcccCCC-C---chhhhHHHHHHHhCCCCCcEEee--cCc
Q 020013 105 EAHSAGVKVVPQVGSFDEARKAVNAGVDAIIVQGREA---GGHVIGQ-D---GLISLLPMVVDLIGDRDIPIIAA--GGI 175 (332)
Q Consensus 105 ~~~~~g~~v~~~v~s~~~a~~a~~~g~D~ivv~G~ea---GGh~~~~-~---~~~~ll~~i~~~~~~~~iPviaa--GGI 175 (332)
.+++.++.+++.+.+.-.|+.++++|.+++...|+.- =|..++. . .....+..|.+.+ ++||++. .|-
T Consensus 11 l~~~~~~~~~p~~~Da~SAr~~e~aGf~a~~~ss~~~aas~G~pD~~~lt~~e~~~~~~~I~~~~---~lPv~~D~d~Gy 87 (275)
T d1s2wa_ 11 MLNSKDLEFIMEAHNGLSARIVQEAGFKGIWGSGLSVSAQLGVRDSNEASWTQVVEVLEFMSDAS---DVPILLDADTGY 87 (275)
T ss_dssp HHHSSSCEEEEEECSHHHHHHHHHHTCSCEEECCHHHHHTC---------CHHHHHHHHHHHHTC---SSCEEEECCSSC
T ss_pred HHhCCCCEEeecCcCHHHHHHHHHcCCCEEEhhHHHHHHHcCCCCCCccchhhHHHHHHhhhccc---CCceeEeccccc
Confidence 3444578889999999999999999999999866421 1211111 1 2244455565555 8999975 455
Q ss_pred CCHHHH----HHHHHcCcceeeeccc
Q 020013 176 VDARGY----VAALSLGAQGICLGTR 197 (332)
Q Consensus 176 ~~~~~v----~~al~~GA~gV~~GT~ 197 (332)
+++.++ .++..+|+.|+.+=-.
T Consensus 88 G~~~~v~~tv~~~~~aGaagi~iEDq 113 (275)
T d1s2wa_ 88 GNFNNARRLVRKLEDRGVAGACLEDK 113 (275)
T ss_dssp SSHHHHHHHHHHHHHTTCCEEEEECB
T ss_pred ccchHHHHHHHHHHHhccceeEeecc
Confidence 666655 5666799999998543
|
| >d1k68a_ c.23.1.1 (A:) Response regulator for cyanobacterial phytochrome {Calothrix sp. pcc 7601, RcpA [TaxId: 1188]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Flavodoxin-like superfamily: CheY-like family: CheY-related domain: Response regulator for cyanobacterial phytochrome species: Calothrix sp. pcc 7601, RcpA [TaxId: 1188]
Probab=90.39 E-value=1.2 Score=33.17 Aligned_cols=84 Identities=13% Similarity=0.048 Sum_probs=56.9
Q ss_pred HHHhCCCE-EEEecCCHHHHHHHHHc--------CCCEEEEecCCCCcccCCCCchhhhHHHHHHHhCCCCCcEEeecCc
Q 020013 105 EAHSAGVK-VVPQVGSFDEARKAVNA--------GVDAIIVQGREAGGHVIGQDGLISLLPMVVDLIGDRDIPIIAAGGI 175 (332)
Q Consensus 105 ~~~~~g~~-v~~~v~s~~~a~~a~~~--------g~D~ivv~G~eaGGh~~~~~~~~~ll~~i~~~~~~~~iPviaaGGI 175 (332)
.+++.|.. -+..+.+.++|...... .+|.|+++-.= ....-+.++.++++.-...++|||.-.+-
T Consensus 21 ~L~~~g~~~~v~~a~~g~eAl~~l~~~~~~~~~~~pdlillD~~m------P~~dG~el~~~ir~~~~~~~iPvI~ls~~ 94 (140)
T d1k68a_ 21 ALANSTVPHEVVTVRDGMEAMAYLRQEGEYANASRPDLILLDLNL------PKKDGREVLAEIKSDPTLKRIPVVVLSTS 94 (140)
T ss_dssp HHHTCSSCCEEEEECSHHHHHHHHTTCGGGGSCCCCSEEEECSSC------SSSCHHHHHHHHHHSTTGGGSCEEEEESC
T ss_pred HHHHcCCCeEEEEECCHHHHHHHHHHhHHhhccCCCCEEEEeecc------ccccChHHHHHHHhCcccCCCcEEEEeCC
Confidence 34555543 23457788888776532 37888884321 11234778888876422126899999998
Q ss_pred CCHHHHHHHHHcCcceeee
Q 020013 176 VDARGYVAALSLGAQGICL 194 (332)
Q Consensus 176 ~~~~~v~~al~~GA~gV~~ 194 (332)
.+.+++.+++.+||++...
T Consensus 95 ~~~~~~~~a~~~Ga~~yl~ 113 (140)
T d1k68a_ 95 INEDDIFHSYDLHVNCYIT 113 (140)
T ss_dssp CCHHHHHHHHHTTCSEEEE
T ss_pred CCHHHHHHHHHCCCCEEEE
Confidence 8999999999999998654
|
| >d1muma_ c.1.12.7 (A:) 2-methylisocitrate lyase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Phosphoenolpyruvate/pyruvate domain family: Phosphoenolpyruvate mutase/Isocitrate lyase-like domain: 2-methylisocitrate lyase species: Escherichia coli [TaxId: 562]
Probab=90.16 E-value=4.6 Score=33.94 Aligned_cols=181 Identities=17% Similarity=0.177 Sum_probs=108.8
Q ss_pred chhhcCCccceecCCCCCCCCcHHHHHHHHhCCC-------ceee----cCC--CCCCHHHHHHHHHHHHhhcCCcEEEE
Q 020013 3 WRGMLGFEYGIVQAPLGPDISGPELVAAVANAGG-------LGLL----RAP--DWEAPDYLRDLIRKTRSLTERPFGVG 69 (332)
Q Consensus 3 ~~~~l~~~~Pii~apM~~g~s~~~la~avs~aGg-------lG~i----~~~--~~~~~e~~~~~i~~~r~~~~~p~gvn 69 (332)
|.+++.-+-|++. | ++.++--|..+.++|. .++- +.+ +..+.+++.+.++++...++.|+-+.
T Consensus 8 lr~ll~~~~~~~~-~---~~~D~~sA~~~e~~Gf~a~~~sg~~~sa~~~G~pD~~~~~~~e~~~~~~~i~~a~~~Pvi~D 83 (289)
T d1muma_ 8 FRAALTKENPLQI-V---GTINANHALLAQRAGYQAIYLSGGGVAAGSLGLPDLGISTLDDVLTDIRRITDVCSLPLLVD 83 (289)
T ss_dssp HHHHHHHCSSEEE-E---ECSSHHHHHHHHHTTCSCEEECHHHHHHTTSCCCSSSCCCHHHHHHHHHHHHHHCCSCEEEE
T ss_pred HHHHHhCCCCEEe-e---cCCCHHHHHHHHHcCCCEEEhhHHHHHHHccCCCCCCCCChHHHHHHHHHHhcccCCCeeec
Confidence 4455554456651 2 5778888887777773 1111 111 23466777778888877888998775
Q ss_pred eecCCCC-----HHHHHHHHhcCCcEEEEcc-------C-------CCcHHHHHHHHh-------CCCEEEEecC-----
Q 020013 70 VVLAFPH-----NENIKAILSEKVAVLQVSW-------G-------EYSEELVLEAHS-------AGVKVVPQVG----- 118 (332)
Q Consensus 70 l~~~~~~-----~~~~~~~~~~~~~~I~~~~-------g-------~~~~~~i~~~~~-------~g~~v~~~v~----- 118 (332)
.=.-... .+.++.+.+.|+..|++-- | .+..+.+.+++. .++.++.-..
T Consensus 84 ~d~GyG~~~~~v~~~v~~~~~aGvagi~iEDq~~pk~~g~~~~~~~~~~~e~~~ki~aa~~a~~~~d~~IiARTDa~~~~ 163 (289)
T d1muma_ 84 ADIGFGSSAFNVARTVKSMIKAGAAGLHIEDQVGAKRCGHRPNKAIVSKEEMVDRIRAAVDAKTDPDFVIMARTDALAVE 163 (289)
T ss_dssp CTTCSSSSHHHHHHHHHHHHHHTCSEEEEECBCCCSSTTCCSCCCBCCHHHHHHHHHHHHHTCSSTTSEEEEEECCHHHH
T ss_pred ccccccccchHHHHHHHHHHHCCCCEEEecCcccccccccccccceecHHHHHHHHHHHHHhcCCcchhheecccccccc
Confidence 4221111 2456777889999998631 1 023455555543 2455655433
Q ss_pred CHHHH----HHHHHcCCCEEEEecCCCCcccCCCCchhhhHHHHHHHhCCCCCcE---EeecCcCCHHHHHHHHHcCcce
Q 020013 119 SFDEA----RKAVNAGVDAIIVQGREAGGHVIGQDGLISLLPMVVDLIGDRDIPI---IAAGGIVDARGYVAALSLGAQG 191 (332)
Q Consensus 119 s~~~a----~~a~~~g~D~ivv~G~eaGGh~~~~~~~~~ll~~i~~~~~~~~iPv---iaaGGI~~~~~v~~al~~GA~g 191 (332)
..++| +...++|+|.|.+.|. .+...+.++.+.+ ++|+ +..||-...-+..++-.+|..-
T Consensus 164 g~~eAi~R~~aY~eAGAD~vf~~~~----------~~~~~~~~~~~~~---~~Pl~~~~~~~~~~p~~s~~eL~~~Gv~~ 230 (289)
T d1muma_ 164 GLDAAIERAQAYVEAGAEMLFPEAI----------TELAMYRQFADAV---QVPILANITEFGATPLFTTDELRSAHVAM 230 (289)
T ss_dssp CHHHHHHHHHHHHHTTCSEEEETTC----------CCHHHHHHHHHHH---CSCBEEECCSSSSSCCCCHHHHHHTTCSE
T ss_pred CHHHHHHHHHHhhhcCCcEEEecCC----------CCHHHHHHHHHhc---CCCEEEeecCcCCCccchHHHHHHhccce
Confidence 24444 3456899999988443 2345677778877 4564 3456654333667888899999
Q ss_pred eeecccccc
Q 020013 192 ICLGTRFVA 200 (332)
Q Consensus 192 V~~GT~fl~ 200 (332)
+..|...+.
T Consensus 231 v~~~~~~~~ 239 (289)
T d1muma_ 231 ALYPLSAFR 239 (289)
T ss_dssp EEESSHHHH
T ss_pred EEechHHHH
Confidence 998766443
|
| >d1f74a_ c.1.10.1 (A:) N-acetylneuraminate lyase {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Aldolase family: Class I aldolase domain: N-acetylneuraminate lyase species: Haemophilus influenzae [TaxId: 727]
Probab=90.12 E-value=0.42 Score=40.59 Aligned_cols=121 Identities=18% Similarity=0.226 Sum_probs=63.6
Q ss_pred HHHHHHc-CCCEEEEecCCCCcccCCCCchhhhHHHHHHHhCCCCCcEEeecCcCCHHHHHH----HHHcCcceeeeccc
Q 020013 123 ARKAVNA-GVDAIIVQGREAGGHVIGQDGLISLLPMVVDLIGDRDIPIIAAGGIVDARGYVA----ALSLGAQGICLGTR 197 (332)
Q Consensus 123 a~~a~~~-g~D~ivv~G~eaGGh~~~~~~~~~ll~~i~~~~~~~~iPviaaGGI~~~~~v~~----al~~GA~gV~~GT~ 197 (332)
.+...+. |+|+|++-|..+-++.-....-..++..+++..+. ++||++.=|=.+.+++.+ +-.+|||++++-..
T Consensus 30 i~~li~~~Gv~gi~v~GttGE~~~Ls~~Er~~l~~~~~~~~~~-~~~vi~gv~~~s~~~~iela~~a~~~Gad~i~~~pP 108 (293)
T d1f74a_ 30 IRHNIDKMKVDGLYVGGSTGENFMLSTEEKKEIFRIAKDEAKD-QIALIAQVGSVNLKEAVELGKYATELGYDCLSAVTP 108 (293)
T ss_dssp HHHHHHTSCCSEEEESSGGGTGGGSCHHHHHHHHHHHHHHHTT-SSEEEEECCCSCHHHHHHHHHHHHHHTCSEEECCCC
T ss_pred HHHHHHhCCCCEEEECccCcchhhCCHHHHhhhhheeeccccC-ccccccccccccHHHHHHHHHHHHHcCCCEeeccCc
Confidence 3445544 99999996664333331211234556666666643 689886443335555543 34589999999888
Q ss_pred cccCcc-CCCCHHHHHHHhcCCCceEEEEecccCCCCCCceeecChHHHhhhc
Q 020013 198 FVASEE-SYAHPEYKRKLVEMDKTEYTDVFGRARWPGAPHRVLQTPFFSNWKN 249 (332)
Q Consensus 198 fl~t~E-s~~~~~~k~~~~~~~~t~~t~~~~~~~~~g~~~R~l~n~~~~~~~~ 249 (332)
+..... ...-+.|++ +.+..+.. ..++. +|......+.-..++++.+
T Consensus 109 ~~~~~s~~~~~~~~~~-v~~~~~~p-i~iYn---~P~~tg~~l~~~~l~~L~~ 156 (293)
T d1f74a_ 109 FYYKFSFPEIKHYYDT-IIAETGSN-MIVYS---IPFLTGVNMGIEQFGELYK 156 (293)
T ss_dssp CSSCCCHHHHHHHHHH-HHHHHCCC-EEEEC---CSSCSCHHHHHHHHHHHHT
T ss_pred cccccchHHHHHHHhc-ccccCCce-EEEEe---eccceeccccchhhhhhhh
Confidence 775321 112233333 33333332 23443 2333334455555555443
|
| >d1mvoa_ c.23.1.1 (A:) PhoP receiver domain {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Flavodoxin-like superfamily: CheY-like family: CheY-related domain: PhoP receiver domain species: Bacillus subtilis [TaxId: 1423]
Probab=90.06 E-value=1.1 Score=32.45 Aligned_cols=82 Identities=18% Similarity=0.128 Sum_probs=58.0
Q ss_pred HHHHHhCCCEEEEecCCHHHHHHHH-HcCCCEEEEecCCCCcccCCCCchhhhHHHHHHHhCCCCCcEEeecCcCCHHHH
Q 020013 103 VLEAHSAGVKVVPQVGSFDEARKAV-NAGVDAIIVQGREAGGHVIGQDGLISLLPMVVDLIGDRDIPIIAAGGIVDARGY 181 (332)
Q Consensus 103 i~~~~~~g~~v~~~v~s~~~a~~a~-~~g~D~ivv~G~eaGGh~~~~~~~~~ll~~i~~~~~~~~iPviaaGGI~~~~~v 181 (332)
.+.+++.|..|. .+.+.++|.... +..+|.|+++=.-. ....+.++.++++... .+|||.-.+-.+.++.
T Consensus 19 ~~~L~~~g~~v~-~a~~~~~al~~l~~~~~dlillD~~mp------~~~G~~~~~~~r~~~~--~~~ii~lt~~~~~~~~ 89 (121)
T d1mvoa_ 19 QYNLERSGYDVI-TASDGEEALKKAETEKPDLIVLDVMLP------KLDGIEVCKQLRQQKL--MFPILMLTAKDEEFDK 89 (121)
T ss_dssp HHHHHHTTCEEE-EESSHHHHHHHHHHHCCSEEEEESSCS------SSCHHHHHHHHHHTTC--CCCEEEEECTTCCCCH
T ss_pred HHHHHHCCCEEE-EECCHHHHHHHHhcccccEEEeccccc------CCCCchhhhhhhccCC--CCEEEEEEeeCCHHHH
Confidence 345667888866 577777776544 56899999853311 1233667777776542 5888888888788889
Q ss_pred HHHHHcCcceee
Q 020013 182 VAALSLGAQGIC 193 (332)
Q Consensus 182 ~~al~~GA~gV~ 193 (332)
.+++.+||+...
T Consensus 90 ~~~~~~Ga~~yl 101 (121)
T d1mvoa_ 90 VLGLELGADDYM 101 (121)
T ss_dssp HHHHHTTCCEEE
T ss_pred HHHHHCCCCEEE
Confidence 999999999755
|
| >d1vhna_ c.1.4.1 (A:) Putative flavin oxidoreducatase TM0096 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: FMN-linked oxidoreductases family: FMN-linked oxidoreductases domain: Putative flavin oxidoreducatase TM0096 species: Thermotoga maritima [TaxId: 2336]
Probab=89.87 E-value=0.4 Score=41.28 Aligned_cols=90 Identities=17% Similarity=0.259 Sum_probs=65.6
Q ss_pred CCHHHHHHHHHHHHhhcCCcEEEEeecCCC---CHHHHHHHHhcCCcEEEEcc--------CCCcHHHHHHHHhCCCEEE
Q 020013 46 EAPDYLRDLIRKTRSLTERPFGVGVVLAFP---HNENIKAILSEKVAVLQVSW--------GEYSEELVLEAHSAGVKVV 114 (332)
Q Consensus 46 ~~~e~~~~~i~~~r~~~~~p~gvnl~~~~~---~~~~~~~~~~~~~~~I~~~~--------g~~~~~~i~~~~~~g~~v~ 114 (332)
.+|+.+.+.++.+++.++.|+.+.+=.-.. ..+.+..+.+.|++.+.+|. |...-+.+..+++ .++|+
T Consensus 105 ~~p~~~~~iv~~~~~~~~~pvsvK~RlG~d~~~~~~~~~~l~~~G~~~itvH~Rt~~q~~~~~a~~~~i~~~~~-~ipvi 183 (305)
T d1vhna_ 105 KDLRHFRYIVRELRKSVSGKFSVKTRLGWEKNEVEEIYRILVEEGVDEVFIHTRTVVQSFTGRAEWKALSVLEK-RIPTF 183 (305)
T ss_dssp SCHHHHHHHHHHHHHHCSSEEEEEEESCSSSCCHHHHHHHHHHTTCCEEEEESSCTTTTTSSCCCGGGGGGSCC-SSCEE
T ss_pred cCHHHHHHHhhhhhhhcccccccccccCcccchhhHHHHHHHHhCCcEEEechhhhhhccccchhhhHHHhhhh-hhhhh
Confidence 578999999999998888998887644222 24567778889999999993 1111134455544 57777
Q ss_pred E--ecCCHHHHHHHHH-cCCCEEEE
Q 020013 115 P--QVGSFDEARKAVN-AGVDAIIV 136 (332)
Q Consensus 115 ~--~v~s~~~a~~a~~-~g~D~ivv 136 (332)
. .+.|.+++....+ .|+|+|-+
T Consensus 184 ~NGdI~s~~d~~~~l~~tg~dgVMi 208 (305)
T d1vhna_ 184 VSGDIFTPEDAKRALEESGCDGLLV 208 (305)
T ss_dssp EESSCCSHHHHHHHHHHHCCSEEEE
T ss_pred cccccccHHHHHHHHHhcCCCeEeh
Confidence 4 5789999998875 69999998
|
| >d1piia2 c.1.2.4 (A:1-254) Indole-3-glycerophosphate synthase, IPGS {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Ribulose-phoshate binding barrel family: Tryptophan biosynthesis enzymes domain: Indole-3-glycerophosphate synthase, IPGS species: Escherichia coli [TaxId: 562]
Probab=89.84 E-value=1 Score=37.51 Aligned_cols=72 Identities=19% Similarity=0.157 Sum_probs=55.5
Q ss_pred CHHHHHHHHHcCCCEEEEec--CCCCcccCCCCchhhhHHHHHHHhCCCCCcEEeecCcCCHHHHHHHHHcCcceeeecc
Q 020013 119 SFDEARKAVNAGVDAIIVQG--REAGGHVIGQDGLISLLPMVVDLIGDRDIPIIAAGGIVDARGYVAALSLGAQGICLGT 196 (332)
Q Consensus 119 s~~~a~~a~~~g~D~ivv~G--~eaGGh~~~~~~~~~ll~~i~~~~~~~~iPviaaGGI~~~~~v~~al~~GA~gV~~GT 196 (332)
++.++.+.++.|+++|-|-- .-.+|+ +..+..+++.+ ++||+.===|-|+.++.++..+|||+|.+=.
T Consensus 69 ~p~~~a~~~~~gA~aiSVLTe~~~F~Gs-------~~~l~~v~~~~---~~PiLrKDFIid~~QI~ear~~GADavLLI~ 138 (254)
T d1piia2 69 DPARIAAIYKHYASAISVLTDEKYFQGS-------FNFLPIVSQIA---PQPILCKDFIIDPYQIYLARYYQADACLLML 138 (254)
T ss_dssp CHHHHHHHHTTTCSEEEEECCSTTTCCC-------TTHHHHHHHHC---CSCEEEESCCCSHHHHHHHHHTTCSEEEEET
T ss_pred hhHHHHHHHHhccCceEEecccccCCCC-------HHHHHHHHhcc---ccccchhcccCcHHHHHHHHhhccchhhhhH
Confidence 56666667788999997721 222333 45677888777 7999988888899999999999999999988
Q ss_pred cccc
Q 020013 197 RFVA 200 (332)
Q Consensus 197 ~fl~ 200 (332)
+++.
T Consensus 139 ~~L~ 142 (254)
T d1piia2 139 SVLD 142 (254)
T ss_dssp TTCC
T ss_pred hhhc
Confidence 7773
|
| >d1k66a_ c.23.1.1 (A:) Response regulator for cyanobacterial phytochrome {Calothrix sp. pcc 7601, RcpB [TaxId: 1188]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Flavodoxin-like superfamily: CheY-like family: CheY-related domain: Response regulator for cyanobacterial phytochrome species: Calothrix sp. pcc 7601, RcpB [TaxId: 1188]
Probab=89.72 E-value=0.92 Score=34.27 Aligned_cols=85 Identities=11% Similarity=0.008 Sum_probs=57.7
Q ss_pred HHHHhCCCE-EEEecCCHHHHHHHHHc-----------CCCEEEEecCCCCcccCCCCchhhhHHHHHHHhCCCCCcEEe
Q 020013 104 LEAHSAGVK-VVPQVGSFDEARKAVNA-----------GVDAIIVQGREAGGHVIGQDGLISLLPMVVDLIGDRDIPIIA 171 (332)
Q Consensus 104 ~~~~~~g~~-v~~~v~s~~~a~~a~~~-----------g~D~ivv~G~eaGGh~~~~~~~~~ll~~i~~~~~~~~iPvia 171 (332)
+.+++.|.. -+..+.+.++|...++. .+|.|+++-.= ....-+.++.++++.-...++|||+
T Consensus 24 ~~L~~~g~~~~v~~a~~g~eAl~~l~~~~~~~~~~~~~~pdlillD~~m------P~~~G~el~~~ir~~~~~~~ipiI~ 97 (149)
T d1k66a_ 24 RLLQREGVVNPIYRCITGDQALDFLYQTGSYCNPDIAPRPAVILLDLNL------PGTDGREVLQEIKQDEVLKKIPVVI 97 (149)
T ss_dssp HHHHHTTBCSCEEEECSHHHHHHHHHTCCSSSCGGGCCCCSEEEECSCC------SSSCHHHHHHHHTTSTTGGGSCEEE
T ss_pred HHHHHcCCceEEEEECChHHHHHHHHhhccccccccccCCCeEEccccc------cCCCcHHHHHHHHhccccCCCeEEE
Confidence 344566663 24567788888776642 48999885321 1123477888876532112689998
Q ss_pred ecCcCCHHHHHHHHHcCcceeee
Q 020013 172 AGGIVDARGYVAALSLGAQGICL 194 (332)
Q Consensus 172 aGGI~~~~~v~~al~~GA~gV~~ 194 (332)
--+-.+.++..+++.+||++...
T Consensus 98 lT~~~~~~~~~~~~~~Ga~~~l~ 120 (149)
T d1k66a_ 98 MTTSSNPKDIEICYSYSISSYIV 120 (149)
T ss_dssp EESCCCHHHHHHHHHTTCSEEEE
T ss_pred EeCCCCHHHHHHHHHCCCCEEEE
Confidence 88888999999999999998653
|
| >d1dxea_ c.1.12.5 (A:) 2-dehydro-3-deoxy-galactarate aldolase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Phosphoenolpyruvate/pyruvate domain family: HpcH/HpaI aldolase domain: 2-dehydro-3-deoxy-galactarate aldolase species: Escherichia coli [TaxId: 562]
Probab=89.51 E-value=1.8 Score=35.87 Aligned_cols=88 Identities=13% Similarity=0.147 Sum_probs=55.3
Q ss_pred cHHHHHHHHhCCCEE--EEecCCHHHHHHHHHcCCCEEEEecCCCCcccCCCCchhhhHHHHHHHhCCCC-CcEEeecCc
Q 020013 99 SEELVLEAHSAGVKV--VPQVGSFDEARKAVNAGVDAIIVQGREAGGHVIGQDGLISLLPMVVDLIGDRD-IPIIAAGGI 175 (332)
Q Consensus 99 ~~~~i~~~~~~g~~v--~~~v~s~~~a~~a~~~g~D~ivv~G~eaGGh~~~~~~~~~ll~~i~~~~~~~~-iPviaaGGI 175 (332)
|..+.+++++....+ +....++..++.+...|.|+|+++-- |. ... +.-+..+..+....+ .|++=.-.
T Consensus 4 ~N~lk~~l~~g~~~~G~~~~~~~p~~~ei~a~~G~Dfv~iD~E----Hg--~~~-~~~~~~~i~a~~~~g~~~~VRvp~- 75 (253)
T d1dxea_ 4 PNKFKAALAAKQVQIGCWSALSNPISTEVLGLAGFDWLVLDGE----HA--PND-ISTFIPQLMALKGSASAPVVRVPT- 75 (253)
T ss_dssp SCHHHHHHHTTCCEEEEEECSCSHHHHHHHTTSCCSEEEEESS----SS--SCC-HHHHHHHHHHTTTCSSEEEEECSS-
T ss_pred chHHHHHHHCCCCEEEEEecCCCHHHHHHHHcCCCCEEEEecc----cC--CCC-hhHHHHHHHHHhccCCCceecCCC-
Confidence 334555665533333 34566888888888999999999643 43 212 223333333333223 34554444
Q ss_pred CCHHHHHHHHHcCcceeee
Q 020013 176 VDARGYVAALSLGAQGICL 194 (332)
Q Consensus 176 ~~~~~v~~al~~GA~gV~~ 194 (332)
.++..+..+|.+||+||++
T Consensus 76 ~~~~~i~~~LD~Ga~GIiv 94 (253)
T d1dxea_ 76 NEPVIIKRLLDIGFYNFLI 94 (253)
T ss_dssp SCHHHHHHHHHTTCCEEEE
T ss_pred CCHHHHHHHHhcCccEEEe
Confidence 4899999999999999987
|
| >d1w25a2 c.23.1.1 (A:141-293) Response regulator PleD, receiver domain {Caulobacter crescentus [TaxId: 155892]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Flavodoxin-like superfamily: CheY-like family: CheY-related domain: Response regulator PleD, receiver domain species: Caulobacter crescentus [TaxId: 155892]
Probab=89.50 E-value=1.3 Score=33.57 Aligned_cols=81 Identities=19% Similarity=0.189 Sum_probs=53.6
Q ss_pred HHhCCCEEEEecCCHHHHHHHHHcCCCEEEEecCCCCcccCCCCchhhhHHHHHHHhCCCCCcEEeecCcCCHHHHHHHH
Q 020013 106 AHSAGVKVVPQVGSFDEARKAVNAGVDAIIVQGREAGGHVIGQDGLISLLPMVVDLIGDRDIPIIAAGGIVDARGYVAAL 185 (332)
Q Consensus 106 ~~~~g~~v~~~v~s~~~a~~a~~~g~D~ivv~G~eaGGh~~~~~~~~~ll~~i~~~~~~~~iPviaaGGI~~~~~v~~al 185 (332)
+...|..+.. ...+.+.......+|.|++.=.= .....+.++.+++..-...++|||.-.+-.+.....+++
T Consensus 33 L~~~g~~v~~--~~~~~~~~~~~~~~DlillD~~m------P~~dG~el~~~ir~~~~~~~iPiI~lt~~~~~~~~~~a~ 104 (153)
T d1w25a2 33 LGVEHRPVIE--SDPEKAKISAGGPVDLVIVNAAA------KNFDGLRFTAALRSEERTRQLPVLAMVDPDDRGRMVKAL 104 (153)
T ss_dssp HTTTSEEEEE--CCHHHHHHHHHSSCSEEEEETTC------SSSCHHHHHHHHHTSGGGTTCCEEEEECTTCHHHHHHHH
T ss_pred HHHCCCEEEE--ccHHHHHHHhcCCCCEEEEECcc------ccccchHHHHHHHhccccccceeEEeecCCCHHHHHHHH
Confidence 3445655432 23333344456679999985321 112347788888754322379999999999999999999
Q ss_pred HcCcceeee
Q 020013 186 SLGAQGICL 194 (332)
Q Consensus 186 ~~GA~gV~~ 194 (332)
.+||+....
T Consensus 105 ~~Ga~d~l~ 113 (153)
T d1w25a2 105 EIGVNDILS 113 (153)
T ss_dssp HTTCCEEEE
T ss_pred hcCcceEEE
Confidence 999998763
|
| >d1z41a1 c.1.4.1 (A:2-338) NADPH dehydrogenase NamA {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: FMN-linked oxidoreductases family: FMN-linked oxidoreductases domain: NADPH dehydrogenase NamA species: Bacillus subtilis [TaxId: 1423]
Probab=89.37 E-value=2.4 Score=36.61 Aligned_cols=86 Identities=16% Similarity=0.181 Sum_probs=59.8
Q ss_pred HHHHHHHHHhhcCCcEEEEeecCCCC---------HHHHHHHHhcCCcEEEEccCCC-----------cHHHHHHHHhC-
Q 020013 51 LRDLIRKTRSLTERPFGVGVVLAFPH---------NENIKAILSEKVAVLQVSWGEY-----------SEELVLEAHSA- 109 (332)
Q Consensus 51 ~~~~i~~~r~~~~~p~gvnl~~~~~~---------~~~~~~~~~~~~~~I~~~~g~~-----------~~~~i~~~~~~- 109 (332)
+.+.++.+|+..+.|+++.+-..... .+.++.+.+.++|++.++.|.. ..++.+.+++.
T Consensus 196 ~~Eiv~air~~~~~~~~vr~~~~~~~~~g~~~~~~~~~~~~l~~~g~d~~~~s~g~~~~~~~~~~~~~~~~~~~~ik~~~ 275 (337)
T d1z41a1 196 LREIIDEVKQVWDGPLFVRVSASDYTDKGLDIADHIGFAKWMKEQGVDLIDCSSGALVHADINVFPGYQVSFAEKIREQA 275 (337)
T ss_dssp HHHHHHHHHHHCCSCEEEEEECCCCSTTSCCHHHHHHHHHHHHHTTCCEEEEECCCSSCCCCCCCTTTTHHHHHHHHHHH
T ss_pred HHHHHHHHhhhhcccceEEecccccccCccchhhhHHHHHHHHHcCCcccccccccccccccccCCcccHHHHHHHHHhc
Confidence 56777888887788888876543321 2345566788999998864431 12455666653
Q ss_pred CCEEEE--ecCCHHHHHHHHHcC-CCEEEE
Q 020013 110 GVKVVP--QVGSFDEARKAVNAG-VDAIIV 136 (332)
Q Consensus 110 g~~v~~--~v~s~~~a~~a~~~g-~D~ivv 136 (332)
+++|+. .+.+++.+.++++.| +|.|.+
T Consensus 276 ~~pvi~~G~i~~~~~ae~~l~~g~~D~V~~ 305 (337)
T d1z41a1 276 DMATGAVGMITDGSMAEEILQNGRADLIFI 305 (337)
T ss_dssp CCEEEECSSCCSHHHHHHHHHTTSCSEEEE
T ss_pred CceEEEeCCcCCHHHHHHHHHCCCcceehh
Confidence 677774 367999999999887 998876
|
| >d1a53a_ c.1.2.4 (A:) Indole-3-glycerophosphate synthase, IPGS {Archaeon Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Ribulose-phoshate binding barrel family: Tryptophan biosynthesis enzymes domain: Indole-3-glycerophosphate synthase, IPGS species: Archaeon Sulfolobus solfataricus [TaxId: 2287]
Probab=89.28 E-value=2.3 Score=35.11 Aligned_cols=71 Identities=20% Similarity=0.188 Sum_probs=54.8
Q ss_pred CHHHHHHHHHcCCCEEEEe--cCCCCcccCCCCchhhhHHHHHHHhCCCCCcEEeecCcCCHHHHHHHHHcCcceeeecc
Q 020013 119 SFDEARKAVNAGVDAIIVQ--GREAGGHVIGQDGLISLLPMVVDLIGDRDIPIIAAGGIVDARGYVAALSLGAQGICLGT 196 (332)
Q Consensus 119 s~~~a~~a~~~g~D~ivv~--G~eaGGh~~~~~~~~~ll~~i~~~~~~~~iPviaaGGI~~~~~v~~al~~GA~gV~~GT 196 (332)
++.+..+.++.|+++|-|- ..-.+|+ +..+..+++.+ ++||+.-==|-++.++.++..+|||+|.+=.
T Consensus 64 d~~~~a~~~~~gA~aiSVLTd~~~F~Gs-------~~dl~~v~~~~---~~PiLrKDFIid~~QI~ea~~~GADaiLLI~ 133 (247)
T d1a53a_ 64 DPIEYSKFMERYAVGLSILTEEKYFNGS-------YETLRKIASSV---SIPILMKDFIVKESQIDDAYNLGADTVLLIV 133 (247)
T ss_dssp CHHHHHHHHTTTCSEEEEECCCTTTCCC-------HHHHHHHHHHC---CSCEEEESCCCSHHHHHHHHHHTCSEEEEEG
T ss_pred CHHHHHHHHHhCCCeEEEecCccccccc-------hHHHHHHHhcc---ccceeecccccChHHHHHHHHhhcchhhhhh
Confidence 4545445778899998772 2223443 56777888877 7999988888899999999999999999988
Q ss_pred ccc
Q 020013 197 RFV 199 (332)
Q Consensus 197 ~fl 199 (332)
+++
T Consensus 134 ~~L 136 (247)
T d1a53a_ 134 KIL 136 (247)
T ss_dssp GGS
T ss_pred hhc
Confidence 877
|
| >d1vcva1 c.1.10.1 (A:1-226) Deoxyribose-phosphate aldolase DeoC {Archaeon Pyrobaculum aerophilum [TaxId: 13773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Aldolase family: Class I aldolase domain: Deoxyribose-phosphate aldolase DeoC species: Archaeon Pyrobaculum aerophilum [TaxId: 13773]
Probab=89.24 E-value=0.55 Score=38.57 Aligned_cols=62 Identities=16% Similarity=0.136 Sum_probs=39.1
Q ss_pred HHHHcCCCEEEE-ecCCCCc------ccCC-CCchhhhHHHHHHHhCCCCCcEEeecCcCCHHHHHHHHHc
Q 020013 125 KAVNAGVDAIIV-QGREAGG------HVIG-QDGLISLLPMVVDLIGDRDIPIIAAGGIVDARGYVAALSL 187 (332)
Q Consensus 125 ~a~~~g~D~ivv-~G~eaGG------h~~~-~~~~~~ll~~i~~~~~~~~iPviaaGGI~~~~~v~~al~~ 187 (332)
.+.++|+|+|.- .|+..+| +..+ ......++.++.+.... ++-|=++|||.|.+++.+++.+
T Consensus 136 ~~~~aGadFIKTSTGf~~~g~~~~~~~~~~at~~~~~~~~~~~~~~g~-~vgiKasGGIrt~~~A~~~i~a 205 (226)
T d1vcva1 136 IIAEAGAHFIKSSTGFAEEAYAARQGNPVHSTPERAAAIARYIKEKGY-RLGVKMAGGIRTREQAKAIVDA 205 (226)
T ss_dssp HHHHHTCSEEECCCSCCCHHHHHHTTCCSSCCHHHHHHHHHHHHHHTC-CCEEEEESSCCSHHHHHHHHHH
T ss_pred HHHHcCcceeeecccccCCcccccccCcccCcHHHHHHHHHHHHHhCC-ceeEECcCCCCCHHHHHHHHHh
Confidence 356789999986 3543332 1101 11223445555444332 6788899999999999999876
|
| >d2a4aa1 c.1.10.1 (A:3-258) Fructose-1,6-bisphosphate aldolase {Plasmodium yoelii yoelii [TaxId: 73239]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Aldolase family: Class I aldolase domain: Fructose-1,6-bisphosphate aldolase species: Plasmodium yoelii yoelii [TaxId: 73239]
Probab=88.62 E-value=0.26 Score=41.38 Aligned_cols=63 Identities=17% Similarity=0.202 Sum_probs=39.6
Q ss_pred HHHcCCCEEEE-ecCCCCcccCCCCchhhhHHHH-HHHh-----CCCCCcEEeecCcCCHHHHHHHHHcCcce
Q 020013 126 AVNAGVDAIIV-QGREAGGHVIGQDGLISLLPMV-VDLI-----GDRDIPIIAAGGIVDARGYVAALSLGAQG 191 (332)
Q Consensus 126 a~~~g~D~ivv-~G~eaGGh~~~~~~~~~ll~~i-~~~~-----~~~~iPviaaGGI~~~~~v~~al~~GA~g 191 (332)
+.++|+|+|.- .|+..+|- ......++.+. ++.. ...++.|=++|||.|.+++.+++.+|++.
T Consensus 160 ~~~aGadFVKTSTG~~~~ga---t~~~v~~m~~~v~e~~~~~~~~g~~~gVKASGGIrt~~~a~~~i~~g~~~ 229 (256)
T d2a4aa1 160 VLNGNADFIKTSTGKVQINA---TPSSVEYIIKAIKEYIKNNPEKNNKIGLKVSGGISDLNTASHYILLARRF 229 (256)
T ss_dssp HHTTTCSEEECCCSCSSCCC---CHHHHHHHHHHHHHHHHHCGGGTTCCEEEEESSCCSHHHHHHHHHHHHHH
T ss_pred HHhcccHHHHhccCCCCCCC---CHHHHHHHHHHHHHHHhhccccCCceeEEecCCCCCHHHHHHHHHHHHHh
Confidence 35789999975 34433322 12223333222 2211 12368899999999999999999998874
|
| >d1m5wa_ c.1.24.1 (A:) Pyridoxine 5'-phosphate synthase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Pyridoxine 5'-phosphate synthase family: Pyridoxine 5'-phosphate synthase domain: Pyridoxine 5'-phosphate synthase species: Escherichia coli [TaxId: 562]
Probab=88.56 E-value=3.4 Score=33.84 Aligned_cols=169 Identities=14% Similarity=0.166 Sum_probs=97.7
Q ss_pred CcHHHHHHHH-hCCCceeecCCC----CCCHHHHHHHHHHHHhhcCCcEEEEeecCCCCHHHHHHHHhcCCcEEEEc---
Q 020013 23 SGPELVAAVA-NAGGLGLLRAPD----WEAPDYLRDLIRKTRSLTERPFGVGVVLAFPHNENIKAILSEKVAVLQVS--- 94 (332)
Q Consensus 23 s~~~la~avs-~aGglG~i~~~~----~~~~e~~~~~i~~~r~~~~~p~gvnl~~~~~~~~~~~~~~~~~~~~I~~~--- 94 (332)
.+|.-++..+ ++|.-|+..-.+ -...++ +..+++..+.|+.+.... .++.++.+.+.+|+.+++-
T Consensus 24 Pd~~~~a~~~~~~GadgITvH~R~DrRHI~~~D----v~~l~~~~~~~lNlE~a~---~~e~i~ia~~~kP~qvtLVPe~ 96 (242)
T d1m5wa_ 24 PDPVQAAFIAEQAGADGITVHLREDRRHITDRD----VRILRQTLDTRMNLEMAV---TEEMLAIAVETKPHFCCLVPEK 96 (242)
T ss_dssp SCHHHHHHHHHTTTCSEEEEECCTTCSSSCHHH----HHHHHHHCSSEEEEEECS---SHHHHHHHHHHCCSEEEECCCC
T ss_pred CCHHHHHHHHHHcCCCeEEeCCCCCccccchHH----HHHHHHHhhccccccccc---chhHHHHHHHhccceEEEeecC
Confidence 4554444444 566666654322 112333 456666666676655332 4789999999999999763
Q ss_pred -------cCCC-------cHHHHHHHHhCCCEEEEecC-CHHHHHHHHHcCCCEEEEe-cCCCCcccCCC-CchhhhHHH
Q 020013 95 -------WGEY-------SEELVLEAHSAGVKVVPQVG-SFDEARKAVNAGVDAIIVQ-GREAGGHVIGQ-DGLISLLPM 157 (332)
Q Consensus 95 -------~g~~-------~~~~i~~~~~~g~~v~~~v~-s~~~a~~a~~~g~D~ivv~-G~eaGGh~~~~-~~~~~ll~~ 157 (332)
.|.. ..++++.+++.|++|-.-+. ++++...+.+.|+|.|=+. |+.+--+.... ..-+..+..
T Consensus 97 r~elTTegGld~~~~~~~L~~~i~~l~~~girvSLFiDpd~~~i~~a~~lGad~IElhTG~Ya~a~~~~~~~~el~~i~~ 176 (242)
T d1m5wa_ 97 RQEVTTEGGLDVAGQRDKMRDACKRLADAGIQVSLFIDADEEQIKAAAEVGAPFIEIHTGCYADAKTDAEQAQELARIAK 176 (242)
T ss_dssp SSCSSCCSCCCSGGGHHHHHHHHHHHHHTTCEEEEEECSCHHHHHHHHHTTCSEEEEECHHHHHCCSHHHHHHHHHHHHH
T ss_pred ccccCcCCceeehhhHHHHHHHHHHHHhcCCeEEEEeccchhhHHHHhhcCcceeeeecccccccccchhhHHHHHHHHH
Confidence 1211 23577889999999876554 7788889999999999772 32211110000 011222222
Q ss_pred HHHHhCCCCCcEEeecCcCCHHHHHHHHHc-Ccceeeeccccc
Q 020013 158 VVDLIGDRDIPIIAAGGIVDARGYVAALSL-GAQGICLGTRFV 199 (332)
Q Consensus 158 i~~~~~~~~iPviaaGGI~~~~~v~~al~~-GA~gV~~GT~fl 199 (332)
..+.....++-|=|.=|+ |-+++....+. +-+-|-+|=+++
T Consensus 177 aa~~A~~lGL~VnAGHgL-n~~Nl~~i~~ip~i~EvsIGHaiI 218 (242)
T d1m5wa_ 177 AATFAASLGLKVNAGHGL-TYHNVKAIAAIPEMHELNIGHAII 218 (242)
T ss_dssp HHHHHHHTTCEEEEESSC-CTTTHHHHHTCTTEEEEEECHHHH
T ss_pred HHHHHHhcCCcccCCCCc-CccchHHHhcCCCCeEEeccHHHH
Confidence 222221236777788888 78888765544 345566664443
|
| >d1vd6a1 c.1.18.3 (A:8-224) Putative glycerophosphodiester phosphodiesterase TTHB141 {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: PLC-like phosphodiesterases family: Glycerophosphoryl diester phosphodiesterase domain: Putative glycerophosphodiester phosphodiesterase TTHB141 species: Thermus thermophilus [TaxId: 274]
Probab=88.35 E-value=0.61 Score=37.00 Aligned_cols=54 Identities=26% Similarity=0.264 Sum_probs=45.3
Q ss_pred HhcCCcEEEEccCCCcHHHHHHHHhCCCEEEE-ecCCHHHHHHHHHcCCCEEEEe
Q 020013 84 LSEKVAVLQVSWGEYSEELVLEAHSAGVKVVP-QVGSFDEARKAVNAGVDAIIVQ 137 (332)
Q Consensus 84 ~~~~~~~I~~~~g~~~~~~i~~~~~~g~~v~~-~v~s~~~a~~a~~~g~D~ivv~ 137 (332)
...+++.+..+.....+++++.+++.|++|+. ++.+.++.+.+.+.|+|+|+..
T Consensus 153 ~~~~~~~i~~~~~~~~~~~v~~~~~~g~~v~~wTvn~~~~~~~~~~~gvdgI~TD 207 (217)
T d1vd6a1 153 PCLGVEAVHPHHALVTEEAVAGWRKRGLFVVAWTVNEEGEARRLLALGLDGLIGD 207 (217)
T ss_dssp GGSCCSEEEEBGGGCCHHHHHHHHHTTCEEEEECCCCHHHHHHHHHTTCSEEEES
T ss_pred hhccceEEcchHhHHHHHHHHHHHHCCCEEEEECCCCHHHHHHHHhCCCCEEEEC
Confidence 34578888887655677899999999999876 5789999999999999999874
|
| >d1xkya1 c.1.10.1 (A:1-292) Dihydrodipicolinate synthase {Bacillus anthracis [TaxId: 1392]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Aldolase family: Class I aldolase domain: Dihydrodipicolinate synthase species: Bacillus anthracis [TaxId: 1392]
Probab=88.33 E-value=1.3 Score=37.24 Aligned_cols=132 Identities=18% Similarity=0.286 Sum_probs=75.3
Q ss_pred HHHHHHHHhcCCcEEEEc--cCCC----cH---HHHHHHH---hCCCEEEEecC------CHHHHHHHHHcCCCEEEEec
Q 020013 77 NENIKAILSEKVAVLQVS--WGEY----SE---ELVLEAH---SAGVKVVPQVG------SFDEARKAVNAGVDAIIVQG 138 (332)
Q Consensus 77 ~~~~~~~~~~~~~~I~~~--~g~~----~~---~~i~~~~---~~g~~v~~~v~------s~~~a~~a~~~g~D~ivv~G 138 (332)
...++.+++.|++.+.+. .|.. .. ++++.+. +..++++..++ +.+.++.+.+.|+|++.+..
T Consensus 27 ~~~i~~l~~~Gv~gl~~~G~tGE~~~Ls~~Er~~l~~~~~~~~~~~~~vi~gv~~~s~~~~i~~a~~a~~~Gad~ilv~p 106 (292)
T d1xkya1 27 TKLVNYLIDNGTTAIVVGGTTGESPTLTSEEKVALYRHVVSVVDKRVPVIAGTGSNNTHASIDLTKKATEVGVDAVMLVA 106 (292)
T ss_dssp HHHHHHHHHTTCCEEEESSTTTTGGGSCHHHHHHHHHHHHHHHTTSSCEEEECCCSCHHHHHHHHHHHHHTTCSEEEEEC
T ss_pred HHHHHHHHHCCCCEEEECeEccchhhCCHHHHHHHHHHHHHHhCCCceEEEecCcccHHHHHHHHHHHHHcCCCEEEECC
Confidence 345666777888887774 1221 12 2233222 23567777665 24566778999999999976
Q ss_pred CCCCcccCCCCchhhhHHHHHHHhCCCCCcEEe-----ecCc-CCHHHHHHHHHcCcceeeeccccccCccCCCCHHHHH
Q 020013 139 REAGGHVIGQDGLISLLPMVVDLIGDRDIPIIA-----AGGI-VDARGYVAALSLGAQGICLGTRFVASEESYAHPEYKR 212 (332)
Q Consensus 139 ~eaGGh~~~~~~~~~ll~~i~~~~~~~~iPvia-----aGGI-~~~~~v~~al~~GA~gV~~GT~fl~t~Es~~~~~~k~ 212 (332)
+-.-.. +....+....++.++. ++|++. ..|. -+.+.+.+.... .. +..-+++..+..+..
T Consensus 107 P~~~~~--s~~~i~~~~~~v~~~~---~~pi~iYn~P~~~~~~~~~~~~~~l~~~--p~------v~giK~~~~~~~~~~ 173 (292)
T d1xkya1 107 PYYNKP--SQEGMYQHFKAIAEST---PLPVMLYNVPGRSIVQISVDTVVRLSEI--EN------IVAIKDAGGDVLTMT 173 (292)
T ss_dssp CCSSCC--CHHHHHHHHHHHHHTC---SSCEEEEECHHHHSSCCCHHHHHHHHTS--TT------EEEEEECSSCHHHHH
T ss_pred CCCCCC--CHHHHHHHHHHHhccC---CCcEEEEeCCcccCCccCHHHHhhhccC--CC------EEEEeccccchhhhh
Confidence 532211 2234466677777766 688876 2333 366666654332 22 223356666666666
Q ss_pred HHhcCCCce
Q 020013 213 KLVEMDKTE 221 (332)
Q Consensus 213 ~~~~~~~t~ 221 (332)
.+.+....+
T Consensus 174 ~~~~~~~~~ 182 (292)
T d1xkya1 174 EIIEKTADD 182 (292)
T ss_dssp HHHHHSCTT
T ss_pred eeeeecCCC
Confidence 665544434
|
| >d1o5ka_ c.1.10.1 (A:) Dihydrodipicolinate synthase {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Aldolase family: Class I aldolase domain: Dihydrodipicolinate synthase species: Thermotoga maritima [TaxId: 2336]
Probab=88.19 E-value=0.96 Score=38.13 Aligned_cols=105 Identities=21% Similarity=0.247 Sum_probs=63.0
Q ss_pred HHHHHHHHhcCCcEEEEc--cCCC----cHH---HHHHHH---hCCCEEEEecC--C----HHHHHHHHHcCCCEEEEec
Q 020013 77 NENIKAILSEKVAVLQVS--WGEY----SEE---LVLEAH---SAGVKVVPQVG--S----FDEARKAVNAGVDAIIVQG 138 (332)
Q Consensus 77 ~~~~~~~~~~~~~~I~~~--~g~~----~~~---~i~~~~---~~g~~v~~~v~--s----~~~a~~a~~~g~D~ivv~G 138 (332)
.+.++.+++.|++.|.+. .|.. ..+ +++... ...++++..++ + .+.++.+.+.|+|++.+..
T Consensus 25 ~~~i~~l~~~Gv~Gi~v~GstGE~~~Ls~~Er~~~~~~~~~~~~~~~~vi~gv~~~st~~ai~~a~~A~~~Gad~v~v~p 104 (295)
T d1o5ka_ 25 ERLVRYQLENGVNALIVLGTTGESPTVNEDEREKLVSRTLEIVDGKIPVIVGAGTNSTEKTLKLVKQAEKLGANGVLVVT 104 (295)
T ss_dssp HHHHHHHHHTTCCEEEESSGGGTGGGCCHHHHHHHHHHHHHHHTTSSCEEEECCCSCHHHHHHHHHHHHHHTCSEEEEEC
T ss_pred HHHHHHHHHcCCCEEEECeeccchhhCCHHHHHHHhhhhccccccCCceEeecccccHHHHHHHHHHHHHcCCCEEEEeC
Confidence 345666777888887764 1221 122 222222 23577887775 3 3456678899999999977
Q ss_pred CCCCcccCCCCchhhhHHHHHHHhCCCCCcEEe------ecCcCCHHHHHHHHH
Q 020013 139 REAGGHVIGQDGLISLLPMVVDLIGDRDIPIIA------AGGIVDARGYVAALS 186 (332)
Q Consensus 139 ~eaGGh~~~~~~~~~ll~~i~~~~~~~~iPvia------aGGI~~~~~v~~al~ 186 (332)
+-.... ..........++.++. ++|++. .|---+++.+.+.++
T Consensus 105 P~y~~~--s~~~i~~~~~~ia~a~---~~pi~iYn~P~~~g~~~~~~~~~~l~~ 153 (295)
T d1o5ka_ 105 PYYNKP--TQEGLYQHYKYISERT---DLGIVVYNVPGRTGVNVLPETAARIAA 153 (295)
T ss_dssp CCSSCC--CHHHHHHHHHHHHTTC---SSCEEEEECHHHHSCCCCHHHHHHHHH
T ss_pred CCCCCC--CHHHHHHHHHHHHhcc---CCCeeEEeccchhcccchhHHHHHHHh
Confidence 633221 2234566667777765 788776 243337777777665
|
| >d1p2fa2 c.23.1.1 (A:1-120) Response regulator DrrB {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Flavodoxin-like superfamily: CheY-like family: CheY-related domain: Response regulator DrrB species: Thermotoga maritima [TaxId: 2336]
Probab=88.05 E-value=1.5 Score=31.71 Aligned_cols=72 Identities=8% Similarity=0.039 Sum_probs=51.1
Q ss_pred EEecCCHHHHHHHHHcCCCEEEEecCCCCcccCCCCchhhhHHHHHHHhCCCCCcEEeecCcCCHHHHHHHHHcCcceee
Q 020013 114 VPQVGSFDEARKAVNAGVDAIIVQGREAGGHVIGQDGLISLLPMVVDLIGDRDIPIIAAGGIVDARGYVAALSLGAQGIC 193 (332)
Q Consensus 114 ~~~v~s~~~a~~a~~~g~D~ivv~G~eaGGh~~~~~~~~~ll~~i~~~~~~~~iPviaaGGI~~~~~v~~al~~GA~gV~ 193 (332)
+..+.+.+++... ...+|.|+++=.- .....+.++.++++..+ ++|||.-.+-.+.+...+++.+||++..
T Consensus 28 v~~~~~~~~al~~-~~~~dlillD~~m------P~~~G~~~~~~lr~~~~--~~~ii~it~~~~~~~~~~a~~~Ga~dyl 98 (120)
T d1p2fa2 28 VKTFLTGEDFLND-EEAFHVVVLDVML------PDYSGYEICRMIKETRP--ETWVILLTLLSDDESVLKGFEAGADDYV 98 (120)
T ss_dssp EEEESSHHHHHHC-CSCCSEEEEESBC------SSSBHHHHHHHHHHHCT--TSEEEEEESCCSHHHHHHHHHHTCSEEE
T ss_pred EEEECCHHHHHhc-CCCCCEEEEeCcc------cccchhHHHHHHhhcCC--CCcEEEEecCCCHHHHHHHHHCCCCEEE
Confidence 4456677776542 3358999885321 11233677888876543 7899999999999999999999999866
Q ss_pred e
Q 020013 194 L 194 (332)
Q Consensus 194 ~ 194 (332)
.
T Consensus 99 ~ 99 (120)
T d1p2fa2 99 T 99 (120)
T ss_dssp E
T ss_pred E
Confidence 3
|
| >d1trea_ c.1.1.1 (A:) Triosephosphate isomerase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Triosephosphate isomerase (TIM) family: Triosephosphate isomerase (TIM) domain: Triosephosphate isomerase species: Escherichia coli [TaxId: 562]
Probab=87.47 E-value=1.9 Score=35.84 Aligned_cols=120 Identities=15% Similarity=0.178 Sum_probs=68.4
Q ss_pred HHHHHHhcCCcEEEEc-------cCCCcHHHH----HHHHhCCCEEEEecCC-HHH-------------HHHHHH-cC--
Q 020013 79 NIKAILSEKVAVLQVS-------WGEYSEELV----LEAHSAGVKVVPQVGS-FDE-------------ARKAVN-AG-- 130 (332)
Q Consensus 79 ~~~~~~~~~~~~I~~~-------~g~~~~~~i----~~~~~~g~~v~~~v~s-~~~-------------a~~a~~-~g-- 130 (332)
....+.+.|++++.++ +++ ..+.+ +.+.+.|+.++..|+- .++ ...... .+
T Consensus 79 Sa~mlkd~G~~~viiGHSERR~~~~E-~~~~i~~K~~~al~~~l~pIlCvGE~~~~r~~~~~~~~~~~Ql~~~~~~~~~~ 157 (255)
T d1trea_ 79 SAAMLKDIGAQYIIIGHSERRTYHKE-SDELIAKKFAVLKEQGLTPVLCIGETEAENEAGKTEEVCARQIDAVLKTQGAA 157 (255)
T ss_dssp CHHHHHHHTCCEEEESCHHHHHHSCC-CHHHHHHHHHHHHHTTCEEEEEECCCHHHHHTTCHHHHHHHHHHHHHHHHCGG
T ss_pred hHHHHHHhccchhhhccccccccccc-cCHHHHHHHHHHHhhheeeEEecccchhhhcchhhhhhhhhhhhhhhcccchh
Confidence 4567788999999885 343 23332 3455689998887763 221 111111 11
Q ss_pred --CCEEEE-ecCCCCcccCCCCc------hhhhHHHHHHHhC---CCCCcEEeecCcCCHHHHHHHHH-cCcceeeeccc
Q 020013 131 --VDAIIV-QGREAGGHVIGQDG------LISLLPMVVDLIG---DRDIPIIAAGGIVDARGYVAALS-LGAQGICLGTR 197 (332)
Q Consensus 131 --~D~ivv-~G~eaGGh~~~~~~------~~~ll~~i~~~~~---~~~iPviaaGGI~~~~~v~~al~-~GA~gV~~GT~ 197 (332)
-..+++ +..-+-|.. .... ....+++....+. ..++||+-.|+| +++++.+.+. -+.||+.+|++
T Consensus 158 ~~~~iiIAYEPvWAIGtG-~~a~~~~~~~~~~~ir~~l~~~~~~~~~~v~iLYGGSV-~~~N~~~i~~~~~vdG~LVGgA 235 (255)
T d1trea_ 158 AFEGAVIAYEPVWAIGTG-KSATPAQAQAVHKFIRDHIAKVDANIAEQVIIQYGGSV-NASNAAELFAQPDIDGALVGGA 235 (255)
T ss_dssp GGTTCEEEECCGGGSSSS-CCCCHHHHHHHHHHHHHHHHHHHHHHHHHCEEEECSCC-CTTTHHHHHTSTTCCEEEESGG
T ss_pred hccCcEEEecchhhcccc-cccCcchhhhhHHHHHHHHhhhchhhcCCccEEecCCc-CHhHHHHHhcCCCCCEEEechh
Confidence 114444 444444431 1111 1222322221110 015899999999 8999999987 58999999999
Q ss_pred cccC
Q 020013 198 FVAS 201 (332)
Q Consensus 198 fl~t 201 (332)
-+-.
T Consensus 236 Sl~~ 239 (255)
T d1trea_ 236 SLKA 239 (255)
T ss_dssp GGCH
T ss_pred hcCH
Confidence 7644
|
| >d1oyaa_ c.1.4.1 (A:) Old yellow enzyme (OYE) {Lager yeast (Saccharomyces pastorianus) [TaxId: 27292]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: FMN-linked oxidoreductases family: FMN-linked oxidoreductases domain: Old yellow enzyme (OYE) species: Lager yeast (Saccharomyces pastorianus) [TaxId: 27292]
Probab=87.32 E-value=0.15 Score=45.90 Aligned_cols=43 Identities=21% Similarity=0.212 Sum_probs=34.3
Q ss_pred HHHHhCCCCCcEEeecCcCCHHHHHHHHHc-CcceeeeccccccCcc
Q 020013 158 VVDLIGDRDIPIIAAGGIVDARGYVAALSL-GAQGICLGTRFVASEE 203 (332)
Q Consensus 158 i~~~~~~~~iPviaaGGI~~~~~v~~al~~-GA~gV~~GT~fl~t~E 203 (332)
+++.+ ++|||+.|||.+..++.+.+.. +||.|.||..|++-++
T Consensus 312 ik~~~---~~PVi~~G~i~~~~~~~~~i~~~~aDlV~~gR~liaDP~ 355 (399)
T d1oyaa_ 312 VYSIW---KGPVIRAGNFALHPEVVREEVKDKRTLIGYGRFFISNPD 355 (399)
T ss_dssp HHHHC---CSCEEEESSCTTCHHHHHHHTTSTTEEEECCHHHHHCTT
T ss_pred HHHHh---CCCEEEECCCCChHHHHHHHHcCCCeEhHHHHHHHHCcc
Confidence 44555 7999999999877776666654 6999999999998765
|
| >d1xm3a_ c.1.31.1 (A:) Thiazole biosynthesis protein ThiG {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: ThiG-like family: ThiG-like domain: Thiazole biosynthesis protein ThiG species: Bacillus subtilis [TaxId: 1423]
Probab=87.11 E-value=1.5 Score=35.98 Aligned_cols=123 Identities=19% Similarity=0.188 Sum_probs=77.9
Q ss_pred ccceecCCCCCCCCcHHHHHHHHh----CCCceee-----cCCCCCCHHHHHHHHHHHHhhcCCcEEEEeecCCCCHHHH
Q 020013 10 EYGIVQAPLGPDISGPELVAAVAN----AGGLGLL-----RAPDWEAPDYLRDLIRKTRSLTERPFGVGVVLAFPHNENI 80 (332)
Q Consensus 10 ~~Pii~apM~~g~s~~~la~avs~----aGglG~i-----~~~~~~~~e~~~~~i~~~r~~~~~p~gvnl~~~~~~~~~~ 80 (332)
+|.++ |=.-|..+.+-|..+++ +++-..+ +...+.-||- .+.++..+.+.+.-|-|=-.++ ++....
T Consensus 64 ~~~lL--PNTAGc~tA~EAvr~A~lARE~~~t~~IKLEVi~D~~~L~PD~-~etl~Aae~Lv~eGF~VlpY~~-~D~v~a 139 (251)
T d1xm3a_ 64 KYTLL--PNTAGASTAEEAVRIARLAKASGLCDMIKVEVIGCSRSLLPDP-VETLKASEQLLEEGFIVLPYTS-DDVVLA 139 (251)
T ss_dssp GSEEE--EECTTCSSHHHHHHHHHHHHHTTCCSSEEECCBCCTTTCCBCH-HHHHHHHHHHHHTTCCEEEEEC-SCHHHH
T ss_pred ceEEc--cchHHHhhHHHHHHHHHHHHHhcCCceEEEEEecCCCCcCCCH-HHHHHHHHHHHhCCcEEEEecC-CCHHHH
Confidence 45566 55456777777766664 3454443 3333344553 4566667666554455543333 345567
Q ss_pred HHHHhcCCcEEEE-------ccCCCcHHHHHHHH-hCCCEEEEe--cCCHHHHHHHHHcCCCEEEE
Q 020013 81 KAILSEKVAVLQV-------SWGEYSEELVLEAH-SAGVKVVPQ--VGSFDEARKAVNAGVDAIIV 136 (332)
Q Consensus 81 ~~~~~~~~~~I~~-------~~g~~~~~~i~~~~-~~g~~v~~~--v~s~~~a~~a~~~g~D~ivv 136 (332)
+.+.+.|+..|-- +.|...+..++.++ +..++|+.. ++++.+|-.+.+.|+|+|++
T Consensus 140 k~Le~~Gc~avMPlgsPIGSg~Gl~n~~~l~~i~~~~~vPvIvDAGIG~pSdAa~AMElG~daVLv 205 (251)
T d1xm3a_ 140 RKLEELGVHAIMPGASPIGSGQGILNPLNLSFIIEQAKVPVIVDAGIGSPKDAAYAMELGADGVLL 205 (251)
T ss_dssp HHHHHHTCSCBEECSSSTTCCCCCSCHHHHHHHHHHCSSCBEEESCCCSHHHHHHHHHTTCSEEEE
T ss_pred HHHHHcCChhHHHhhhhhhcCCCcCChHHHHHHHhcCCccEEEecCCCCHHHHHHHHHccCCEEEe
Confidence 7788889888742 12333445556554 568888866 56999999999999999998
|
| >d1xxxa1 c.1.10.1 (A:5-300) Dihydrodipicolinate synthase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Aldolase family: Class I aldolase domain: Dihydrodipicolinate synthase species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=86.75 E-value=1.7 Score=36.55 Aligned_cols=104 Identities=19% Similarity=0.244 Sum_probs=58.6
Q ss_pred HHHHHHHhcCCcEEEEc--cCCC----cHH---HHHHHH---hCCCEEEEecC--C----HHHHHHHHHcCCCEEEEecC
Q 020013 78 ENIKAILSEKVAVLQVS--WGEY----SEE---LVLEAH---SAGVKVVPQVG--S----FDEARKAVNAGVDAIIVQGR 139 (332)
Q Consensus 78 ~~~~~~~~~~~~~I~~~--~g~~----~~~---~i~~~~---~~g~~v~~~v~--s----~~~a~~a~~~g~D~ivv~G~ 139 (332)
..++.+++.|++.+.+. .|.. .++ +++... +..++++..++ + .+.++.+.+.|+|++.+..+
T Consensus 32 ~~i~~li~~Gv~Gi~v~G~tGE~~~Ls~eEr~~l~~~~~~~~~~~~~vi~g~~~~s~~~~i~~a~~a~~~Gad~v~i~~P 111 (296)
T d1xxxa1 32 RLANHLVDQGCDGLVVSGTTGESPTTTDGEKIELLRAVLEAVGDRARVIAGAGTYDTAHSIRLAKACAAEGAHGLLVVTP 111 (296)
T ss_dssp HHHHHHHHTTCSEEEESSTTTTTTTSCHHHHHHHHHHHHHHHTTTSEEEEECCCSCHHHHHHHHHHHHHHTCSEEEEECC
T ss_pred HHHHHHHHcCCCEEEECeeccchhhCCHHHHHHHHHHHHHHhccccceEeccccchhHHHHHHHHHHHHhcCCeEEEEec
Confidence 44556666777777653 1221 111 222221 23467777664 3 34567788999999998766
Q ss_pred CCCcccCCCCchhhhHHHHHHHhCCCCCcEEee-----cCcC-CHHHHHHHHH
Q 020013 140 EAGGHVIGQDGLISLLPMVVDLIGDRDIPIIAA-----GGIV-DARGYVAALS 186 (332)
Q Consensus 140 eaGGh~~~~~~~~~ll~~i~~~~~~~~iPviaa-----GGI~-~~~~v~~al~ 186 (332)
-.... +.........++.+.. ++||+.- +|.. +.+.+.+...
T Consensus 112 ~~~~~--~~~~l~~~~~~v~~~~---~~pi~lYn~p~~~g~~~~~~~~~~L~~ 159 (296)
T d1xxxa1 112 YYSKP--PQRGLQAHFTAVADAT---ELPMLLYDIPGRSAVPIEPDTIRALAS 159 (296)
T ss_dssp CSSCC--CHHHHHHHHHHHHTTC---SSCEEEEECHHHHSSCCCHHHHHHHHT
T ss_pred cCCCC--CHHHHHHHHHHHHHhc---CCCEEEEECccccCCCCCHHHHHHhcC
Confidence 33221 2234466667777665 7898763 4553 5555554433
|
| >d1izca_ c.1.12.5 (A:) Macrophomate synthase {Macrophoma commelinae [TaxId: 108330]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Phosphoenolpyruvate/pyruvate domain family: HpcH/HpaI aldolase domain: Macrophomate synthase species: Macrophoma commelinae [TaxId: 108330]
Probab=86.67 E-value=2.2 Score=36.26 Aligned_cols=77 Identities=18% Similarity=0.149 Sum_probs=50.4
Q ss_pred EEEecCCHHHHHHHHHcCCCEEEEecCCCCcccCCCC-chhhhHHHHHHHhCCCCCcEEeecCcCCHHHHHHHHHcCcce
Q 020013 113 VVPQVGSFDEARKAVNAGVDAIIVQGREAGGHVIGQD-GLISLLPMVVDLIGDRDIPIIAAGGIVDARGYVAALSLGAQG 191 (332)
Q Consensus 113 v~~~v~s~~~a~~a~~~g~D~ivv~G~eaGGh~~~~~-~~~~ll~~i~~~~~~~~iPviaaGGI~~~~~v~~al~~GA~g 191 (332)
+|....|+.-++.....|.|+|+++.- |..... ....++..+...-.....|++=.-+- ++..+..+|.+||+|
T Consensus 45 ~~~~~~s~~~~e~~a~~g~D~v~iD~E----Hg~~~~~~~~~~i~a~~~~~~~~~~~iVRvp~~-~~~~I~~~LD~Ga~G 119 (299)
T d1izca_ 45 VAHGIPSTFVTKVLAATKPDFVWIDVE----HGMFNRLELHDAIHAAQHHSEGRSLVIVRVPKH-DEVSLSTALDAGAAG 119 (299)
T ss_dssp EEECSCCHHHHHHHHHTCCSEEEEETT----TSCCCHHHHHHHHHHHHHHTTTCSEEEEECCTT-CHHHHHHHHHHTCSE
T ss_pred eeccCCCHHHHHHHHcCCCCEEEEcCC----CCCCCHHHHHHHHHHHHHhCCCCCCeEEeCCCC-ChHHHHHHHHhCcCe
Confidence 456678999999999999999999753 431111 12233333322111112456655565 889999999999999
Q ss_pred eee
Q 020013 192 ICL 194 (332)
Q Consensus 192 V~~ 194 (332)
|++
T Consensus 120 Iiv 122 (299)
T d1izca_ 120 IVI 122 (299)
T ss_dssp EEE
T ss_pred eec
Confidence 997
|
| >d1eixa_ c.1.2.3 (A:) Orotidine 5'-monophosphate decarboxylase (OMP decarboxylase) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Ribulose-phoshate binding barrel family: Decarboxylase domain: Orotidine 5'-monophosphate decarboxylase (OMP decarboxylase) species: Escherichia coli [TaxId: 562]
Probab=86.49 E-value=6.7 Score=31.47 Aligned_cols=172 Identities=16% Similarity=0.105 Sum_probs=90.8
Q ss_pred ccceecCCCCCCCCcHHHHHHHHhC-C-CceeecCCCCCC-HHHHHHHHHHHHhhcCCcEEEEeecCCC---CHHHHHHH
Q 020013 10 EYGIVQAPLGPDISGPELVAAVANA-G-GLGLLRAPDWEA-PDYLRDLIRKTRSLTERPFGVGVVLAFP---HNENIKAI 83 (332)
Q Consensus 10 ~~Pii~apM~~g~s~~~la~avs~a-G-glG~i~~~~~~~-~e~~~~~i~~~r~~~~~p~gvnl~~~~~---~~~~~~~~ 83 (332)
+.|||.| + -+++.+-+..+.+. + .+..+-.+ +.- ...=.+.++++++ .+.++-..+-..+- ....++.+
T Consensus 3 ~~~iivA-L--D~~~~~eal~i~~~l~~~i~~iKiG-~~l~~~~G~~~i~~l~~-~~~~if~D~K~~DI~nt~~~~~~~~ 77 (231)
T d1eixa_ 3 NSPVVVA-L--DYHNRDDALAFVDKIDPRDCRLKVG-KEMFTLFGPQFVRELQQ-RGFDIFLDLKFHDIPNTAAHAVAAA 77 (231)
T ss_dssp CCCEEEE-E--CCSSHHHHHHHHTTSCTTTCEEEEE-HHHHHHHHHHHHHHHHH-TTCCEEEEEEECSCHHHHHHHHHHH
T ss_pred CCCEEEE-E--cCCCHHHHHHHHHHhCCcceEEEEC-HHHHhhcCHHHHHHHHh-cCchhhHhhHhhcCcHHHHHHHHhh
Confidence 4566633 3 24566666666654 2 34444332 100 0111245566665 34454445444331 13456777
Q ss_pred HhcCCcEEEEccCCCcHHHHHHHHh----CC---CEEEE-ecC-C-------------------HHHHHHHHHcCCCEEE
Q 020013 84 LSEKVAVLQVSWGEYSEELVLEAHS----AG---VKVVP-QVG-S-------------------FDEARKAVNAGVDAII 135 (332)
Q Consensus 84 ~~~~~~~I~~~~g~~~~~~i~~~~~----~g---~~v~~-~v~-s-------------------~~~a~~a~~~g~D~iv 135 (332)
.+.+++++.+|.- ...+.++.+.+ .+ ..++. ... + .+.+..+.+.++|.++
T Consensus 78 ~~~~~~~~tvh~~-~g~~~l~~~~~~~~~~~~~~~~~~~v~~~ts~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~ 156 (231)
T d1eixa_ 78 ADLGVWMVNVHAS-GGARMMTAAREALVPFGKDAPLLIAVTVLTSMEASDLVDLGMTLSPADYAERLAALTQKCGLDGVV 156 (231)
T ss_dssp HHHTCSEEEEBGG-GCHHHHHHHHHTTGGGGGGCCEEEEECSCTTCCHHHHHTTTCCSCHHHHHHHHHHHHHHTTCSEEE
T ss_pred hcccceEEEEecc-CcHHHHHHHHHhhhhcCccceEEEEEeeccccccchhcccccccchhHHHHHHHHHHHHhcccccc
Confidence 7889999999832 23455544432 11 22222 111 1 1133445677888876
Q ss_pred EecCCCCcccCCCCchhhhHHHHHHHhCCCCCcEEeecCcCCHH----------HHHHHHHcCcceeeeccccccCcc
Q 020013 136 VQGREAGGHVIGQDGLISLLPMVVDLIGDRDIPIIAAGGIVDAR----------GYVAALSLGAQGICLGTRFVASEE 203 (332)
Q Consensus 136 v~G~eaGGh~~~~~~~~~ll~~i~~~~~~~~iPviaaGGI~~~~----------~v~~al~~GA~gV~~GT~fl~t~E 203 (332)
..+. .+..+++... .-.++...||+-.. +..+++..|||-+++|+.+..++.
T Consensus 157 ~~~~--------------~~~~~~~~~~--~~~~~~tPGI~~~~~~~~dq~r~~tp~~Ai~~GaD~iIVGR~It~a~d 218 (231)
T d1eixa_ 157 CSAQ--------------EAVRFKQVFG--QEFKLVTPGIRPQGSEAGDQRRIMTPEQALSAGVDYMVIGRPVTQSVD 218 (231)
T ss_dssp CCGG--------------GHHHHHHHHC--SSSEEEECCBCCTTCCCTTCCSCBCHHHHHHTTCSEEEECHHHHTSSS
T ss_pred ccch--------------hhhhhhhhcC--CccceecCCcccCCCCccCccccCCHHHHHHcCCCEEEECCcccCCCC
Confidence 5211 1233333332 34688888884311 256788999999999999987644
|
| >d1yioa2 c.23.1.1 (A:3-130) Response regulatory protein StyR, N-terminal domain {Pseudomonas fluorescens [TaxId: 294]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Flavodoxin-like superfamily: CheY-like family: CheY-related domain: Response regulatory protein StyR, N-terminal domain species: Pseudomonas fluorescens [TaxId: 294]
Probab=86.46 E-value=0.71 Score=33.86 Aligned_cols=83 Identities=20% Similarity=0.138 Sum_probs=58.0
Q ss_pred HHHHHHhCCCEEEEecCCHHHHHHHH-HcCCCEEEEecCCCCcccCCCCchhhhHHHHHHHhCCCCCcEEeecCcCCHHH
Q 020013 102 LVLEAHSAGVKVVPQVGSFDEARKAV-NAGVDAIIVQGREAGGHVIGQDGLISLLPMVVDLIGDRDIPIIAAGGIVDARG 180 (332)
Q Consensus 102 ~i~~~~~~g~~v~~~v~s~~~a~~a~-~~g~D~ivv~G~eaGGh~~~~~~~~~ll~~i~~~~~~~~iPviaaGGI~~~~~ 180 (332)
+.+.++..|..+. .+.+.+++.... +..+|.|+++-.-.+ ...+.++.+++...+ ..||+.--|-.+.+.
T Consensus 18 l~~~L~~~g~~v~-~a~~~~~al~~~~~~~~dliilD~~mp~------~~G~~~~~~i~~~~~--~~~ii~lt~~~~~~~ 88 (128)
T d1yioa2 18 LRNLLRSAGFEVE-TFDCASTFLEHRRPEQHGCLVLDMRMPG------MSGIELQEQLTAISD--GIPIVFITAHGDIPM 88 (128)
T ss_dssp HHHHHHTTTCEEE-EESSHHHHHHHCCTTSCEEEEEESCCSS------SCHHHHHHHHHHTTC--CCCEEEEESCTTSCC
T ss_pred HHHHHHHcCCCcc-ccccHHHHHHHHHhcCCCEeehhhhccc------chhHHHHHHHHhhCC--CCeEEEEEEECCHHH
Confidence 3445667788765 566888887765 467999988643222 233677777776543 578777777878888
Q ss_pred HHHHHHcCcceee
Q 020013 181 YVAALSLGAQGIC 193 (332)
Q Consensus 181 v~~al~~GA~gV~ 193 (332)
..+++.+||++..
T Consensus 89 ~~~a~~~Ga~dyl 101 (128)
T d1yioa2 89 TVRAMKAGAIEFL 101 (128)
T ss_dssp CHHHHHTTEEEEE
T ss_pred HHHHHHCCCCEEE
Confidence 8999999998764
|
| >d1p0ka_ c.1.4.1 (A:) Isopentenyl-diphosphate delta-isomerase {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: FMN-linked oxidoreductases family: FMN-linked oxidoreductases domain: Isopentenyl-diphosphate delta-isomerase species: Bacillus subtilis [TaxId: 1423]
Probab=86.14 E-value=4.4 Score=34.35 Aligned_cols=86 Identities=14% Similarity=0.070 Sum_probs=57.9
Q ss_pred HHHHHHHHHhhcCCcEEEEeecCCCCHHHHHHHHhcCCcEEEEcc--CC----------------------CcHHHHHHH
Q 020013 51 LRDLIRKTRSLTERPFGVGVVLAFPHNENIKAILSEKVAVLQVSW--GE----------------------YSEELVLEA 106 (332)
Q Consensus 51 ~~~~i~~~r~~~~~p~gvnl~~~~~~~~~~~~~~~~~~~~I~~~~--g~----------------------~~~~~i~~~ 106 (332)
..+.++++++.++.|+.+-.+.+....+.+..+.+.++|+|.++. |. ++...+...
T Consensus 146 ~~~~i~~i~~~~~~~vivk~v~~~~~~~~a~~~~~~GaD~i~v~~~gG~~~~~~~~~~~~~~~g~~~~~~~~~~~~l~~~ 225 (329)
T d1p0ka_ 146 ALKRIEQICSRVSVPVIVKEVGFGMSKASAGKLYEAGAAAVDIGGYGGTNFSKIENLRRQRQISFFNSWGISTAASLAEI 225 (329)
T ss_dssp HHHHHHHHHHHCSSCEEEEEESSCCCHHHHHHHHHHTCSEEEEEC---------------CCGGGGTTCSCCHHHHHHHH
T ss_pred hHHHHHHHHHHcCCCcEEEecCCcchHHHHHHHHhcCCCEEEEcCCCCCCccccchhhcccCccchhHhHHHHHHHHHHH
Confidence 445677788777888777655544446677778899999998741 21 001111111
Q ss_pred Hh--CCCEEEE--ecCCHHHHHHHHHcCCCEEEE
Q 020013 107 HS--AGVKVVP--QVGSFDEARKAVNAGVDAIIV 136 (332)
Q Consensus 107 ~~--~g~~v~~--~v~s~~~a~~a~~~g~D~ivv 136 (332)
.. .+++|+. .+.+..++.+++..|||+|-+
T Consensus 226 ~~~~~~v~viadGGIr~g~Dv~KAlalGAdaV~i 259 (329)
T d1p0ka_ 226 RSEFPASTMIASGGLQDALDVAKAIALGASCTGM 259 (329)
T ss_dssp HHHCTTSEEEEESSCCSHHHHHHHHHTTCSEEEE
T ss_pred HhhcCCceEEEcCCcccHHHHHHHHHcCCCchhc
Confidence 21 3688886 477999999999999999988
|
| >d1ykwa1 c.1.14.1 (A:146-428) Ribulose 1,5-bisphosphate carboxylase-oxygenase {Chlorobium tepidum [TaxId: 1097]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: RuBisCo, C-terminal domain family: RuBisCo, large subunit, C-terminal domain domain: Ribulose 1,5-bisphosphate carboxylase-oxygenase species: Chlorobium tepidum [TaxId: 1097]
Probab=85.82 E-value=8.7 Score=32.05 Aligned_cols=204 Identities=17% Similarity=0.175 Sum_probs=113.7
Q ss_pred hhhcCC-ccceecCCCCC--CCCcHHHHHHHHhC--CCceeecCC------CCCCHH-H---HHHHHHHHHhhcC--CcE
Q 020013 4 RGMLGF-EYGIVQAPLGP--DISGPELVAAVANA--GGLGLLRAP------DWEAPD-Y---LRDLIRKTRSLTE--RPF 66 (332)
Q Consensus 4 ~~~l~~-~~Pii~apM~~--g~s~~~la~avs~a--GglG~i~~~------~~~~~e-~---~~~~i~~~r~~~~--~p~ 66 (332)
.+++++ +.|++.+-+=+ |.+..+++..+-+. ||+.+|..- .+...+ . +.+.+++..+.|. +-|
T Consensus 11 R~~lgv~~RPL~~tiiKPk~GLsp~~~a~~~~~~~~GG~D~IKDDE~l~~~~~~p~~eRv~~~~~a~~~a~~~TG~~~ly 90 (283)
T d1ykwa1 11 RDILNAHGRPIFFGVVKPNIGLSPGEFAEIAYQSWLGGLDIAKDDEMLADVTWSSIEERAAHLGKARRKAEAETGEPKIY 90 (283)
T ss_dssp HHHHTCCSSCEEEEECSSCSSCCHHHHHHHHHHHHHTTCSEEECCTTCSSBTTBCHHHHHHHHHHHHHHHHHHHSSCCEE
T ss_pred HHHhCCCCCceEEeecCCCCCCCHHHHHHHHHHHHhCCCceecCCccCCCCCCccHHHHHHHHHHHHHHHHHHhCCeeEE
Confidence 455653 36777653322 57777777766553 999999531 122322 2 2333344444443 567
Q ss_pred EEEeecCCC-CHHHHHHHHhcCCcEEEEcc---CCCcHHHHHHHHh-CCCEEEEec-C------------CH-HHHHHHH
Q 020013 67 GVGVVLAFP-HNENIKAILSEKVAVLQVSW---GEYSEELVLEAHS-AGVKVVPQV-G------------SF-DEARKAV 127 (332)
Q Consensus 67 gvnl~~~~~-~~~~~~~~~~~~~~~I~~~~---g~~~~~~i~~~~~-~g~~v~~~v-~------------s~-~~a~~a~ 127 (332)
.+|+--... ..+..+.+.+.|.+++-+.. |. ..++.+++ ..+++...- . +. -.++..-
T Consensus 91 a~NiT~~~~em~~ra~~~~~~G~~~~mv~~~~~G~---~a~~~l~~~~~lpi~~H~a~~g~~~r~~~~Gis~~vl~KL~R 167 (283)
T d1ykwa1 91 LANITDEVDSLMEKHDVAVRNGANALLINALPVGL---SAVRMLSNYTQVPLIGHFPFIASFSRMEKYGIHSKVMTKLQR 167 (283)
T ss_dssp EEECCCCGGGHHHHHHHHHHHTCCEEEEEHHHHCH---HHHHHHHHHCSSCEEEECTTTHHHHCSTTSEECHHHHHHHHH
T ss_pred eeecCCCHHHHHHHHHHHHHhCCCEEEEecccchH---HHHHHHHhhcCCCeEeeeccceeeccCcCCCccHHHHHHHHH
Confidence 888753211 13566788889999887752 32 23444443 456665432 1 11 1233344
Q ss_pred HcCCCEEEEecCCCCcccCCCCchhhhHHHHHHHhC-----CCCCcEEeecCcCCHHHHHHHHH-cC-ccee-eeccccc
Q 020013 128 NAGVDAIIVQGREAGGHVIGQDGLISLLPMVVDLIG-----DRDIPIIAAGGIVDARGYVAALS-LG-AQGI-CLGTRFV 199 (332)
Q Consensus 128 ~~g~D~ivv~G~eaGGh~~~~~~~~~ll~~i~~~~~-----~~~iPviaaGGI~~~~~v~~al~-~G-A~gV-~~GT~fl 199 (332)
-+|+|.+.+-++ ||.- . .+....++....... ..-.|| .+||+ ++..+...+. +| .|-+ ++|...+
T Consensus 168 LaGaD~ih~~~~--gg~~-~-~~~e~~~~~~~~~~~~~~~~k~~~Pv-~sGG~-~~~~vp~~~~~~G~~Dvil~aGGGi~ 241 (283)
T d1ykwa1 168 LAGLDAVIMPGF--GDRV-M-TPEEEVLENVIECTKPMGRIKPCLPV-PGGSD-SALTLQTVYEKVGNVDFGFVPGRGVF 241 (283)
T ss_dssp HHTCSEEEEECS--STTS-S-SCHHHHHHHHHHHHSCCTTCCCCEEE-EECSB-CTTTHHHHHHHHCSSCSEECBSSSSS
T ss_pred HcCCCceeecCC--cccc-c-CchHHHHHHHHHhcCcccccCCceee-ccCCc-chhhhHHHHHhcCCceEEEecCcccc
Confidence 579999998654 3332 1 122222222222221 113567 58999 7899988885 78 4544 4789988
Q ss_pred cCccCCC--CHHHHHHHhc
Q 020013 200 ASEESYA--HPEYKRKLVE 216 (332)
Q Consensus 200 ~t~Es~~--~~~~k~~~~~ 216 (332)
..+.-+. -.+.||++..
T Consensus 242 gHP~G~~aGa~A~rqA~ea 260 (283)
T d1ykwa1 242 GHPMGPKAGAKSIRQAWEA 260 (283)
T ss_dssp SCTTCHHHHHHHHHHHHHH
T ss_pred cCCCchHHHHHHHHHHHHH
Confidence 8876432 2566777664
|
| >d7reqb2 c.23.6.1 (B:476-638) Methylmalonyl-CoA mutase beta subunit, C-terminal domain {Propionibacterium freudenreichii, subsp. shermanii [TaxId: 1744]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Flavodoxin-like superfamily: Cobalamin (vitamin B12)-binding domain family: Cobalamin (vitamin B12)-binding domain domain: Methylmalonyl-CoA mutase beta subunit, C-terminal domain species: Propionibacterium freudenreichii, subsp. shermanii [TaxId: 1744]
Probab=85.53 E-value=0.3 Score=38.14 Aligned_cols=79 Identities=10% Similarity=-0.012 Sum_probs=46.6
Q ss_pred HHhCCCEEEEe--cCCHHHHHHHHHcCCCEEEEecCCCCcccCCCCchhhhHHHHHHHhCC--CCCcEEeecCcCCHHHH
Q 020013 106 AHSAGVKVVPQ--VGSFDEARKAVNAGVDAIIVQGREAGGHVIGQDGLISLLPMVVDLIGD--RDIPIIAAGGIVDARGY 181 (332)
Q Consensus 106 ~~~~g~~v~~~--v~s~~~a~~a~~~g~D~ivv~G~eaGGh~~~~~~~~~ll~~i~~~~~~--~~iPviaaGGI~~~~~v 181 (332)
+...|+.++.. +++.+.+..+.+.++|.+++-+.+ .....+++++.+.++. .+..|+ +||....++.
T Consensus 60 f~~gGfev~~~~~~~~~e~v~aa~~~~a~vvvicssd--------~~y~~~~~~~~~aLk~ag~~~~vl-aGg~~~~~d~ 130 (163)
T d7reqb2 60 WHIAGIDTPQVEGGTTAEIVEAFKKSGAQVADLCSSA--------KVYAQQGLEVAKALKAAGAKALYL-SGAFKEFGDD 130 (163)
T ss_dssp HHHTTCBCCEEESCCHHHHHHHHHHHTCSEEEEECCH--------HHHHHHHHHHHHHHHHTTCSEEEE-ESCGGGGGGG
T ss_pred HHccCeeeccCCCCCcHHHHHHHHhCCCCEEEEecCc--------cchHHHHHHHHHHHHhcccceeEE-EecCCCcccH
Confidence 34456655432 333344555677899988885432 1224555666655532 244455 4554477888
Q ss_pred HHHHHcCcceee
Q 020013 182 VAALSLGAQGIC 193 (332)
Q Consensus 182 ~~al~~GA~gV~ 193 (332)
..+...|+|++.
T Consensus 131 ~~l~~aGVd~~i 142 (163)
T d7reqb2 131 AAEAEKLIDGRL 142 (163)
T ss_dssp HHHHHHHCCEEE
T ss_pred HHHHhCCCCeEe
Confidence 888889998765
|
| >d1ep3a_ c.1.4.1 (A:) Dihydroorotate dehydrogenase {Lactococcus lactis, isozyme B [TaxId: 1358]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: FMN-linked oxidoreductases family: FMN-linked oxidoreductases domain: Dihydroorotate dehydrogenase species: Lactococcus lactis, isozyme B [TaxId: 1358]
Probab=85.37 E-value=4.4 Score=33.91 Aligned_cols=90 Identities=16% Similarity=0.213 Sum_probs=63.2
Q ss_pred CHHHHHHHHHHHHhhcCCcEEEEeecCCC-CHHHHHHHHhcCCcEEEEcc------------------------CCC---
Q 020013 47 APDYLRDLIRKTRSLTERPFGVGVVLAFP-HNENIKAILSEKVAVLQVSW------------------------GEY--- 98 (332)
Q Consensus 47 ~~e~~~~~i~~~r~~~~~p~gvnl~~~~~-~~~~~~~~~~~~~~~I~~~~------------------------g~~--- 98 (332)
.++.+.+.+..+++..+.|+.+.+-.... ..+..+.+.+.+++.+.++. |.+
T Consensus 148 ~~~~~~~~~~~v~~~~~~p~~vkl~~~~~~~~~~a~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~g~sG~~i~~ 227 (311)
T d1ep3a_ 148 DPEVAAALVKACKAVSKVPLYVKLSPNVTDIVPIAKAVEAAGADGLTMINTLMGVRFDLKTRQPILANITGGLSGPAIKP 227 (311)
T ss_dssp CHHHHHHHHHHHHHHCSSCEEEEECSCSSCSHHHHHHHHHTTCSEEEECCCEEECCBCTTTCSBSSTTSCEEEESGGGHH
T ss_pred CHHHHHHHHHHHHhccCCCeeeeecccccchHHHHHHHHHhhhheeEEEeeccccccccccccccccccCCCCCCCcccc
Confidence 46666777777888888999888755433 35566777788999887531 100
Q ss_pred -cHHHHHHHHhC-CCEEEE--ecCCHHHHHHHHHcCCCEEEE
Q 020013 99 -SEELVLEAHSA-GVKVVP--QVGSFDEARKAVNAGVDAIIV 136 (332)
Q Consensus 99 -~~~~i~~~~~~-g~~v~~--~v~s~~~a~~a~~~g~D~ivv 136 (332)
..+++..+++. +++++. .|.|.+++.+....|||+|-+
T Consensus 228 ~~l~~i~~i~~~~~ipIig~GGI~s~~Da~~~i~~GAd~V~i 269 (311)
T d1ep3a_ 228 VALKLIHQVAQDVDIPIIGMGGVANAQDVLEMYMAGASAVAV 269 (311)
T ss_dssp HHHHHHHHHHTTCSSCEEECSSCCSHHHHHHHHHHTCSEEEE
T ss_pred hhHHHHHHHhhhcceeEEEeCCcCCHHHHHHHHHcCCCEEEe
Confidence 02455566554 677774 578999999999999999987
|
| >d1ujpa_ c.1.2.4 (A:) Trp synthase alpha-subunit {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Ribulose-phoshate binding barrel family: Tryptophan biosynthesis enzymes domain: Trp synthase alpha-subunit species: Thermus thermophilus [TaxId: 274]
Probab=84.97 E-value=5.2 Score=33.31 Aligned_cols=106 Identities=21% Similarity=0.258 Sum_probs=68.8
Q ss_pred HHHHHHHHhCCCceeecCCCCCCHHHHHHHHHHHHhhcCCcEEEEeecCCCCHHHHHHHHhcCCcEEEE-c-c---C---
Q 020013 25 PELVAAVANAGGLGLLRAPDWEAPDYLRDLIRKTRSLTERPFGVGVVLAFPHNENIKAILSEKVAVLQV-S-W---G--- 96 (332)
Q Consensus 25 ~~la~avs~aGglG~i~~~~~~~~e~~~~~i~~~r~~~~~p~gvnl~~~~~~~~~~~~~~~~~~~~I~~-~-~---g--- 96 (332)
..++..+.++|.-|+|-. . .++|+..+....+++. +. --|-++.+...++.++.+.+..-.+|-. + . |
T Consensus 109 ~~F~~~~~~aGvdGliip-D-LP~ee~~~~~~~~~~~-gl-~~I~lvsPtT~~eRi~~i~~~s~GFIY~Vs~~GvTG~~~ 184 (271)
T d1ujpa_ 109 ERFFGLFKQAGATGVILP-D-LPPDEDPGLVRLAQEI-GL-ETVFLLAPTSTDARIATVVRHATGFVYAVSVTGVTGMRE 184 (271)
T ss_dssp HHHHHHHHHHTCCEEECT-T-CCGGGCHHHHHHHHHH-TC-EEECEECTTCCHHHHHHHHTTCCSCEEEECC--------
T ss_pred hhHhHHHhhcCceeEecc-c-hhhhhHHHHHHHhhcc-cc-ceeeccCCCcchHHHHHHHHhCcchhhhhcccCccCccc
Confidence 568888999999999975 3 4666655556666553 22 2244444544577888888766556543 1 1 1
Q ss_pred ---CCcHHHHHHHHhC-CCEEEEe--cCCHHHHHHHHHcCCCEEEE
Q 020013 97 ---EYSEELVLEAHSA-GVKVVPQ--VGSFDEARKAVNAGVDAIIV 136 (332)
Q Consensus 97 ---~~~~~~i~~~~~~-g~~v~~~--v~s~~~a~~a~~~g~D~ivv 136 (332)
....+.++++|+. .+++... +.+.+++..+ .++|++||
T Consensus 185 ~~~~~~~~~i~~ik~~t~~Pv~vGFGIs~~e~v~~~--~~ADGvIV 228 (271)
T d1ujpa_ 185 RLPEEVKDLVRRIKARTALPVAVGFGVSGKATAAQA--AVADGVVV 228 (271)
T ss_dssp ----CCHHHHHHHHTTCCSCEEEESCCCSHHHHHHH--TTSSEEEE
T ss_pred cchHHHHHHHHhhhccccCCeEEeCCCCCHHHHHHh--CCCCEEEE
Confidence 1234677888764 5666654 7799988765 58999999
|
| >d1xi3a_ c.1.3.1 (A:) Thiamin phosphate synthase {Archaeon (Pyrococcus furiosus) [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Thiamin phosphate synthase family: Thiamin phosphate synthase domain: Thiamin phosphate synthase species: Archaeon (Pyrococcus furiosus) [TaxId: 2261]
Probab=84.93 E-value=3.6 Score=32.55 Aligned_cols=105 Identities=13% Similarity=0.193 Sum_probs=64.7
Q ss_pred HHHHHHHHhcCCcEEEEcc-CCCcHHHH-------HHHHhCCCEEEEecCCHHHHHHHHHcCCCEEEEecCCCCcccCCC
Q 020013 77 NENIKAILSEKVAVLQVSW-GEYSEELV-------LEAHSAGVKVVPQVGSFDEARKAVNAGVDAIIVQGREAGGHVIGQ 148 (332)
Q Consensus 77 ~~~~~~~~~~~~~~I~~~~-g~~~~~~i-------~~~~~~g~~v~~~v~s~~~a~~a~~~g~D~ivv~G~eaGGh~~~~ 148 (332)
.+.++.+++.|+++|++-. .....++. +.+++.+++++.. . ....+.+.++|+|=+ +.
T Consensus 20 ~~~v~~~l~~Gv~~vqlR~k~~~~~e~~~~a~~l~~i~~~~~~~liin-d---~~~lA~~~~adGvHl----------~~ 85 (206)
T d1xi3a_ 20 VESVREALEGGATAIQMRIKNAPTREMYEIGKTLRQLTREYDALFFVD-D---RVDVALAVDADGVQL----------GP 85 (206)
T ss_dssp HHHHHHHHHTTCSEEEECCCSCCHHHHHHHHHHHHHHHHHTTCEEEEE-S---CHHHHHHHTCSEEEE----------CT
T ss_pred HHHHHHHHHcCCCEEEEcCCCCCHHHHHHHHHHHHHHHHHcCCeEEec-h---hHHHHHhccCceEee----------cc
Confidence 4668888999999999842 22222222 2335578887754 2 234566779998854 11
Q ss_pred CchhhhHHHHHHHhCCCCCcEEeecCcCCHHHHHHHHHcCcceeeeccccccC
Q 020013 149 DGLISLLPMVVDLIGDRDIPIIAAGGIVDARGYVAALSLGAQGICLGTRFVAS 201 (332)
Q Consensus 149 ~~~~~ll~~i~~~~~~~~iPviaaGGI~~~~~v~~al~~GA~gV~~GT~fl~t 201 (332)
.. +. +.. .... ....+.....++.+.+..+...|+|-+.+|.-|-..
T Consensus 86 ~~-~~-~~~-~~~~---~~~~iig~s~h~~~e~~~a~~~g~DYi~~gpvf~T~ 132 (206)
T d1xi3a_ 86 ED-MP-IEV-AKEI---APNLIIGASVYSLEEALEAEKKGADYLGAGSVFPTK 132 (206)
T ss_dssp TS-CC-HHH-HHHH---CTTSEEEEEESSHHHHHHHHHHTCSEEEEECSSCC-
T ss_pred cc-cc-Hhh-hhhc---ccccccccccCCHHHHHHHHhcCCCEEEeccccccc
Confidence 11 11 112 2222 123344556678899999999999999999988643
|
| >d1xrsb1 c.23.6.1 (B:102-261) D-lysine 5,6-aminomutase beta subunit KamE, C-terminal domain {Clostridium sticklandii [TaxId: 1511]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Flavodoxin-like superfamily: Cobalamin (vitamin B12)-binding domain family: Cobalamin (vitamin B12)-binding domain domain: D-lysine 5,6-aminomutase beta subunit KamE, C-terminal domain species: Clostridium sticklandii [TaxId: 1511]
Probab=84.54 E-value=0.51 Score=36.57 Aligned_cols=61 Identities=20% Similarity=0.293 Sum_probs=36.6
Q ss_pred HHHHHHcCCCEEEEecCC--CCcccCCCCchhhhHHHHHHHhCC----CCCcEEeecCcCCHHHHHHHHHcCcceee
Q 020013 123 ARKAVNAGVDAIIVQGRE--AGGHVIGQDGLISLLPMVVDLIGD----RDIPIIAAGGIVDARGYVAALSLGAQGIC 193 (332)
Q Consensus 123 a~~a~~~g~D~ivv~G~e--aGGh~~~~~~~~~ll~~i~~~~~~----~~iPviaaGGI~~~~~v~~al~~GA~gV~ 193 (332)
+..+.+..+|.|.+...- .++| +..++++.+.++. .++||++.|++-+.+. +-.+|||++.
T Consensus 72 v~~a~e~~~d~VglS~l~t~~~~h-------~~~~~~~i~~l~~~g~~d~v~vivGG~~~~~~~---a~~~GaD~~f 138 (160)
T d1xrsb1 72 IKKAVELEADVLLVSQTVTQKNVH-------IQNMTHLIELLEAEGLRDRFVLLCGGPRINNEI---AKELGYDAGF 138 (160)
T ss_dssp HHHHHHTTCSEEEEECCCCTTSHH-------HHHHHHHHHHHHHTTCGGGSEEEEECTTCCHHH---HHTTTCSEEE
T ss_pred HHHHHhcCCCEEEEeecccccchh-------HHHHHHHHHHHHHcCCCCceEEEEcCCCCCHHH---HHHcCCCEEc
Confidence 455667789999886531 1222 3344444444321 2478888888877543 3367999875
|
| >d2tpsa_ c.1.3.1 (A:) Thiamin phosphate synthase {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Thiamin phosphate synthase family: Thiamin phosphate synthase domain: Thiamin phosphate synthase species: Bacillus subtilis [TaxId: 1423]
Probab=84.53 E-value=2.4 Score=34.39 Aligned_cols=105 Identities=20% Similarity=0.166 Sum_probs=65.3
Q ss_pred HHHHHHHHhcCCcEEEEcc---C-CCcHHHH-------HHHHhCCCEEEEecCCHHHHHHHHHcCCCEEEEecCCCCccc
Q 020013 77 NENIKAILSEKVAVLQVSW---G-EYSEELV-------LEAHSAGVKVVPQVGSFDEARKAVNAGVDAIIVQGREAGGHV 145 (332)
Q Consensus 77 ~~~~~~~~~~~~~~I~~~~---g-~~~~~~i-------~~~~~~g~~v~~~v~s~~~a~~a~~~g~D~ivv~G~eaGGh~ 145 (332)
.+.++.+++.|+++|++=. . ....+.. +.+++.+++++.. .++ ..|.+.++|+|=+
T Consensus 33 ~~~v~~al~~Gv~~iqlR~K~~~~~~~~~~~~~a~~l~~lc~~~~~~liIn-d~~---~lA~~~~adGvHl--------- 99 (226)
T d2tpsa_ 33 VTVVQKALKGGATLYQFREKGGDALTGEARIKFAEKAQAACREAGVPFIVN-DDV---ELALNLKADGIHI--------- 99 (226)
T ss_dssp HHHHHHHHHHTCSEEEECCCSTTCCCHHHHHHHHHHHHHHHHHHTCCEEEE-SCH---HHHHHHTCSEEEE---------
T ss_pred HHHHHHHHHCCCCEEEEcCCCccchhHHHHHHHHHHHHHHHHHhCCeEEEc-CCH---HHHhhccCCEEEe---------
Confidence 4667888889999999841 1 1122222 2334568887754 334 3456678998855
Q ss_pred CCCCchhhhHHHHHHHhCCCCCcEEeecCcCCHHHHHHHHHcCcceeeeccccccC
Q 020013 146 IGQDGLISLLPMVVDLIGDRDIPIIAAGGIVDARGYVAALSLGAQGICLGTRFVAS 201 (332)
Q Consensus 146 ~~~~~~~~ll~~i~~~~~~~~iPviaaGGI~~~~~v~~al~~GA~gV~~GT~fl~t 201 (332)
+..... +..++...+ + .+..+-+.+.+.+..+...|||-|.+|.-|-..
T Consensus 100 ~~~d~~---~~~~r~~~~--~--~iig~S~h~~~e~~~a~~~g~DYi~~gpvf~T~ 148 (226)
T d2tpsa_ 100 GQEDAN---AKEVRAAIG--D--MILGVSAHTMSEVKQAEEDGADYVGLGPIYPTE 148 (226)
T ss_dssp CTTSSC---HHHHHHHHT--T--SEEEEEECSHHHHHHHHHHTCSEEEECCSSCCC
T ss_pred ccccch---hhhhhhccc--c--eeeeeeccchHHHHHHHhCcCCeEEEecccccc
Confidence 111111 233344442 2 234455779999999999999999999987543
|
| >d1vlia2 c.1.10.6 (A:2-296) Spore coat polysaccharide biosynthesis protein SpsE, N-terminal domain {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Aldolase family: NeuB-like domain: Spore coat polysaccharide biosynthesis protein SpsE, N-terminal domain species: Bacillus subtilis [TaxId: 1423]
Probab=84.30 E-value=5.1 Score=33.65 Aligned_cols=74 Identities=16% Similarity=0.106 Sum_probs=56.5
Q ss_pred HHHHHHHhCCCEEEEecCCHHHHHHHHHcCCCEEEEecCCCCcccCCCCchhhhHHHHHHHhCCCCCcEEeecCcCCHHH
Q 020013 101 ELVLEAHSAGVKVVPQVGSFDEARKAVNAGVDAIIVQGREAGGHVIGQDGLISLLPMVVDLIGDRDIPIIAAGGIVDARG 180 (332)
Q Consensus 101 ~~i~~~~~~g~~v~~~v~s~~~a~~a~~~g~D~ivv~G~eaGGh~~~~~~~~~ll~~i~~~~~~~~iPviaaGGI~~~~~ 180 (332)
++.+.+++.|+.++..+.+.+.+..+.+.++|++.+-.. ....+.|+..+.+. ..||+.+-|-++..+
T Consensus 92 ~l~~~~k~~gi~~~~s~fd~~s~~~l~~l~~~~iKIaS~--------d~~n~~Li~~i~k~----~kpviistG~~~~~e 159 (295)
T d1vlia2 92 PLLDYCREKQVIFLSTVCDEGSADLLQSTSPSAFKIASY--------EINHLPLLKYVARL----NRPMIFSTAGAEISD 159 (295)
T ss_dssp HHHHHHHHTTCEEECBCCSHHHHHHHHTTCCSCEEECGG--------GTTCHHHHHHHHTT----CSCEEEECTTCCHHH
T ss_pred hHHHHhhhcccceeeecccceeeeeecccCcceeEeccc--------ccccHHHHHHHHhc----CCchheechhhhhhh
Confidence 456667788999999999999999999999999988221 22346778777653 578888777678888
Q ss_pred HHHHHH
Q 020013 181 YVAALS 186 (332)
Q Consensus 181 v~~al~ 186 (332)
+..+..
T Consensus 160 i~~~~~ 165 (295)
T d1vlia2 160 VHEAWR 165 (295)
T ss_dssp HHHHHH
T ss_pred HHHHHh
Confidence 877664
|
| >d1w3ia_ c.1.10.1 (A:) 2-keto-3-deoxy gluconate aldolase Eda {Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Aldolase family: Class I aldolase domain: 2-keto-3-deoxy gluconate aldolase Eda species: Sulfolobus solfataricus [TaxId: 2287]
Probab=83.63 E-value=2.6 Score=35.26 Aligned_cols=90 Identities=14% Similarity=0.148 Sum_probs=49.9
Q ss_pred HHHHHHHhcCCcEEEEc--cCCC----cH---HHHHHHHhCCCEEEEecC--CH----HHHHHHHHcCCCEEEEecCCCC
Q 020013 78 ENIKAILSEKVAVLQVS--WGEY----SE---ELVLEAHSAGVKVVPQVG--SF----DEARKAVNAGVDAIIVQGREAG 142 (332)
Q Consensus 78 ~~~~~~~~~~~~~I~~~--~g~~----~~---~~i~~~~~~g~~v~~~v~--s~----~~a~~a~~~g~D~ivv~G~eaG 142 (332)
..++.+++.|++.|.+. .|.. .. ++++...+...++++.++ +. +.++.+.+.|+|++.+..+-.=
T Consensus 24 ~~i~~l~~~Gv~gi~~~GttGE~~~Ls~~Er~~~~~~~~~~~~~~i~gv~~~st~~~i~~a~~a~~~Ga~~~~~~~P~~~ 103 (293)
T d1w3ia_ 24 IHAENLIRKGIDKLFVNGTTGLGPSLSPEEKLENLKAVYDVTNKIIFQVGGLNLDDAIRLAKLSKDFDIVGIASYAPYYY 103 (293)
T ss_dssp HHHHHHHHTTCCEEEESSTTTTGGGSCHHHHHHHHHHHHTTCSCEEEECCCSCHHHHHHHHHHGGGSCCSEEEEECCCSC
T ss_pred HHHHHHHHcCCCEEEECeechhhhhCCHHHHHHHHHHHHhhccccccccccchhhhhhhhhhhhhhhccccccccccchh
Confidence 44566667788877664 1221 12 233444444444554443 33 4456677899999987654211
Q ss_pred cccCCCCchhhhHHHHHHHhCCCCCcEEe
Q 020013 143 GHVIGQDGLISLLPMVVDLIGDRDIPIIA 171 (332)
Q Consensus 143 Gh~~~~~~~~~ll~~i~~~~~~~~iPvia 171 (332)
... ..........++.++. ++|++.
T Consensus 104 ~~~-~~~~i~~~f~~Ia~a~---~~pi~l 128 (293)
T d1w3ia_ 104 PRM-SEKHLVKYFKTLCEVS---PHPVYL 128 (293)
T ss_dssp SSC-CHHHHHHHHHHHHHHC---SSCEEE
T ss_pred ccc-hHHHHHHHHHHHHHhh---ccceee
Confidence 111 2234566777787776 678764
|
| >d1rd5a_ c.1.2.4 (A:) Trp synthase alpha-subunit {Maize (Zea mays) [TaxId: 4577]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Ribulose-phoshate binding barrel family: Tryptophan biosynthesis enzymes domain: Trp synthase alpha-subunit species: Maize (Zea mays) [TaxId: 4577]
Probab=83.50 E-value=7 Score=32.26 Aligned_cols=105 Identities=18% Similarity=0.179 Sum_probs=67.2
Q ss_pred HHHHHhCCCceeecCCCCCCHHHHHHHHHHHHhhcCCcEEEEeecCCCCHHHHHHHHhcCCcEEEE-c-cCC--------
Q 020013 28 VAAVANAGGLGLLRAPDWEAPDYLRDLIRKTRSLTERPFGVGVVLAFPHNENIKAILSEKVAVLQV-S-WGE-------- 97 (332)
Q Consensus 28 a~avs~aGglG~i~~~~~~~~e~~~~~i~~~r~~~~~p~gvnl~~~~~~~~~~~~~~~~~~~~I~~-~-~g~-------- 97 (332)
.....++|.-|+|.. . .++|+-.+....+++. +. --|-++.+...++.++.+.+..-.+|-+ + .|.
T Consensus 110 ~~~~~~~GvdG~Iip-D-lp~eE~~~~~~~~~~~-gl-~~I~lvaPtt~~~Ri~~i~~~a~gFvY~vs~~GvTG~~~~~~ 185 (261)
T d1rd5a_ 110 LAKMKEAGVHGLIVP-D-LPYVAAHSLWSEAKNN-NL-ELVLLTTPAIPEDRMKEITKASEGFVYLVSVNGVTGPRANVN 185 (261)
T ss_dssp THHHHHTTCCEEECT-T-CBTTTHHHHHHHHHHT-TC-EECEEECTTSCHHHHHHHHHHCCSCEEEECSSCCBCTTSCBC
T ss_pred HHHHHhcCceeeeec-C-ccHHHHHHHHHHHhcc-cc-ceEEEeccCCchhHHHHHHhcCcchhhhhhccCcccccccch
Confidence 445578899999975 3 3555555556666653 22 3344455544577788777765566543 1 111
Q ss_pred -CcHHHHHHHHhC-CCEEEE--ecCCHHHHHHHHHcCCCEEEE
Q 020013 98 -YSEELVLEAHSA-GVKVVP--QVGSFDEARKAVNAGVDAIIV 136 (332)
Q Consensus 98 -~~~~~i~~~~~~-g~~v~~--~v~s~~~a~~a~~~g~D~ivv 136 (332)
...++++++|+. ..++.. .+.++++++...+.|+|++||
T Consensus 186 ~~~~~~i~~ik~~t~~Pi~vGFGI~~~e~v~~~~~~gaDGvIV 228 (261)
T d1rd5a_ 186 PRVESLIQEVKKVTNKPVAVGFGISKPEHVKQIAQWGADGVII 228 (261)
T ss_dssp THHHHHHHHHHHHCSSCEEEESCCCSHHHHHHHHHTTCSEEEE
T ss_pred hHHHHHHHHhhhccCCCeEEEcCCCCHHHHHHHHhcCCCEEEE
Confidence 123566777664 566654 467999999999999999999
|
| >d1qapa1 c.1.17.1 (A:130-296) Quinolinic acid phosphoribosyltransferase (Nicotinate-nucleotide pyrophosphorylase, NadC), C-terminal domain {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Nicotinate/Quinolinate PRTase C-terminal domain-like family: NadC C-terminal domain-like domain: Quinolinic acid phosphoribosyltransferase (Nicotinate-nucleotide pyrophosphorylase, NadC), C-terminal domain species: Salmonella typhimurium [TaxId: 90371]
Probab=82.65 E-value=5 Score=30.83 Aligned_cols=81 Identities=17% Similarity=0.238 Sum_probs=49.3
Q ss_pred HHHHHHHHHhh-cCCcEEEEeecCCCCHHHHHHHHhcCCcEEEEccCCCcHHHHHHHHhCCCEEEEecC---CHHHHHHH
Q 020013 51 LRDLIRKTRSL-TERPFGVGVVLAFPHNENIKAILSEKVAVLQVSWGEYSEELVLEAHSAGVKVVPQVG---SFDEARKA 126 (332)
Q Consensus 51 ~~~~i~~~r~~-~~~p~gvnl~~~~~~~~~~~~~~~~~~~~I~~~~g~~~~~~i~~~~~~g~~v~~~v~---s~~~a~~a 126 (332)
+.+.+.+++.. ...++-|-+ ...+++..+++.++|+|.+.- ..|+++.+.++...-.+...++ +.+.+...
T Consensus 66 ~~~~~~~~~~~~~~~~IeVEv----~~~~~~~~a~~~g~diImLDN-~~pe~~~~av~~i~~~~~lEaSGgI~~~ni~~y 140 (167)
T d1qapa1 66 VRQAVEKAFWLHPDVPVEVEV----ENLDELDDALKAGADIIMLDN-FNTDQMREAVKRVNGQARLEVSGNVTAETLREF 140 (167)
T ss_dssp HHHHHHHHHHHSTTSCEEEEE----SSHHHHHHHHHTTCSEEEESS-CCHHHHHHHHHTTCTTCCEEECCCSCHHHHHHH
T ss_pred hhhhhHHHhhcCCCceEEEec----CcHHHHHHHHhcCCcEEEecC-CCHHHHHHHHHhcCCceEEEEeCCCCHHHHHHH
Confidence 34555555543 233444322 225677788899999999972 2355555555543332222222 78888888
Q ss_pred HHcCCCEEEE
Q 020013 127 VNAGVDAIIV 136 (332)
Q Consensus 127 ~~~g~D~ivv 136 (332)
...|+|+|.+
T Consensus 141 a~~GVD~IS~ 150 (167)
T d1qapa1 141 AETGVDFISV 150 (167)
T ss_dssp HHTTCSEEEC
T ss_pred HHcCCCEEEC
Confidence 8999999976
|
| >d2a6na1 c.1.10.1 (A:1-292) Dihydrodipicolinate synthase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Aldolase family: Class I aldolase domain: Dihydrodipicolinate synthase species: Escherichia coli [TaxId: 562]
Probab=81.85 E-value=3.4 Score=34.45 Aligned_cols=129 Identities=13% Similarity=0.182 Sum_probs=69.9
Q ss_pred HHHHHHHhcCCcEEEEc--cCCC----cHH---HHHHHH---hCCCEEEEecC--CH----HHHHHHHHcCCCEEEEecC
Q 020013 78 ENIKAILSEKVAVLQVS--WGEY----SEE---LVLEAH---SAGVKVVPQVG--SF----DEARKAVNAGVDAIIVQGR 139 (332)
Q Consensus 78 ~~~~~~~~~~~~~I~~~--~g~~----~~~---~i~~~~---~~g~~v~~~v~--s~----~~a~~a~~~g~D~ivv~G~ 139 (332)
..++.+++.|++.+.+. .|.. ..+ +++... +..++++..++ +. +.++.+.+.|+|++++..+
T Consensus 26 ~~i~~l~~~Gv~Gl~~~GstGE~~~Ls~~Er~~~~~~~~~~~~~~~~vi~g~~~~s~~~~i~~~~~a~~~Gad~~~~~pP 105 (292)
T d2a6na1 26 KLIDYHVASGTSAIVSVGTTGESATLNHDEHADVVMMTLDLADGRIPVIAGTGANATAEAISLTQRFNDSGIVGCLTVTP 105 (292)
T ss_dssp HHHHHHHHHTCCEEEESSTTTTGGGSCHHHHHHHHHHHHHHHTTSSCEEEECCCSSHHHHHHHHHTTTTSSCCEEEEECC
T ss_pred HHHHHHHHcCCCEEEECeeccchhhCCHHHHHHHhhhhhhhccccceeEeecccchHHHHHHHhccHHhcCCcceeccCC
Confidence 45666777788877664 2321 122 222222 23467776654 33 3455677889999999766
Q ss_pred CCCcccCCCCchhhhHHHHHHHhCCCCCcEEee-----cCc-CCHHHHHHHHHcCcceeeeccccccCccCCCCHHHHHH
Q 020013 140 EAGGHVIGQDGLISLLPMVVDLIGDRDIPIIAA-----GGI-VDARGYVAALSLGAQGICLGTRFVASEESYAHPEYKRK 213 (332)
Q Consensus 140 eaGGh~~~~~~~~~ll~~i~~~~~~~~iPviaa-----GGI-~~~~~v~~al~~GA~gV~~GT~fl~t~Es~~~~~~k~~ 213 (332)
-.... .....+....++.++. ++||+.= .|+ -+++.+.+.... .. +..-+++.....+...
T Consensus 106 ~~~~~--~~~~i~~~f~~v~~~~---~~pi~iYn~P~~~g~~~~~e~~~~L~~~--pn------v~giK~~~~~~~~~~~ 172 (292)
T d2a6na1 106 YYNRP--SQEGLYQHFKAIAEHT---DLPQILYNVPSATGCDLLPETVGRLAKV--KN------IIGIKEATGNLTRVNQ 172 (292)
T ss_dssp CSSCC--CHHHHHHHHHHHHHTC---SSCEEEEECHHHHSCCCCHHHHHHHHTS--TT------EEEEEECSCCTTHHHH
T ss_pred CCCCC--CHHHHHHHHHHHhhcc---CCcEEEEEeccccCCccCHHHHHHHhcC--CC------EEEEEeccCcchhhhh
Confidence 33222 2234567777787776 6887642 333 355655554332 22 2234566544455555
Q ss_pred HhcCCC
Q 020013 214 LVEMDK 219 (332)
Q Consensus 214 ~~~~~~ 219 (332)
+.+...
T Consensus 173 ~~~~~~ 178 (292)
T d2a6na1 173 IKELVS 178 (292)
T ss_dssp HHTTSC
T ss_pred hhhhcC
Confidence 555433
|
| >d1i4na_ c.1.2.4 (A:) Indole-3-glycerophosphate synthase, IPGS {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Ribulose-phoshate binding barrel family: Tryptophan biosynthesis enzymes domain: Indole-3-glycerophosphate synthase, IPGS species: Thermotoga maritima [TaxId: 2336]
Probab=80.99 E-value=2.5 Score=34.97 Aligned_cols=72 Identities=22% Similarity=0.233 Sum_probs=54.2
Q ss_pred CHHHHHHHHHcCCCEEEEe--cCCCCcccCCCCchhhhHHHHHHHhCCCCCcEEeecCcCCHHHHHHHHHcCcceeeecc
Q 020013 119 SFDEARKAVNAGVDAIIVQ--GREAGGHVIGQDGLISLLPMVVDLIGDRDIPIIAAGGIVDARGYVAALSLGAQGICLGT 196 (332)
Q Consensus 119 s~~~a~~a~~~g~D~ivv~--G~eaGGh~~~~~~~~~ll~~i~~~~~~~~iPviaaGGI~~~~~v~~al~~GA~gV~~GT 196 (332)
++.+..+.++.|+++|-|- -.-.||+ +..+..+++.+ ++||+.-==|-|+.++.++..+|||+|.+=.
T Consensus 62 d~~~~a~~ye~GA~aiSVLTd~~~F~Gs-------~~~l~~vr~~~---~~PiLrKDFIid~~QI~ea~~~GADaiLLI~ 131 (251)
T d1i4na_ 62 SLEDFIRMYDELADAISILTEKHYFKGD-------PAFVRAARNLT---CRPILAKDFYIDTVQVKLASSVGADAILIIA 131 (251)
T ss_dssp CHHHHHHHHHHHCSEEEEECCCSSSCCC-------THHHHHHHTTC---CSCEEEECCCCSTHHHHHHHHTTCSEEEEEG
T ss_pred cHHHHHHHHhcCCcceEEecccCCCCCC-------HHHHHHHhhcc---cCchhhhhhhhCHHHHHHHHhhccceEEeec
Confidence 4555445567799998772 2223443 45677777766 7999988888899999999999999999988
Q ss_pred cccc
Q 020013 197 RFVA 200 (332)
Q Consensus 197 ~fl~ 200 (332)
+++.
T Consensus 132 ~~L~ 135 (251)
T d1i4na_ 132 RILT 135 (251)
T ss_dssp GGSC
T ss_pred cccc
Confidence 8774
|
| >d1o5xa_ c.1.1.1 (A:) Triosephosphate isomerase {Plasmodium falciparum [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Triosephosphate isomerase (TIM) family: Triosephosphate isomerase (TIM) domain: Triosephosphate isomerase species: Plasmodium falciparum [TaxId: 5833]
Probab=80.87 E-value=6.4 Score=32.17 Aligned_cols=33 Identities=15% Similarity=0.355 Sum_probs=30.0
Q ss_pred CCcEEeecCcCCHHHHHHHHH-cCcceeeeccccc
Q 020013 166 DIPIIAAGGIVDARGYVAALS-LGAQGICLGTRFV 199 (332)
Q Consensus 166 ~iPviaaGGI~~~~~v~~al~-~GA~gV~~GT~fl 199 (332)
++||+-.|.| +++++.+.+. -+.||+.+|++-|
T Consensus 201 ~i~ilYGGSV-~~~N~~~i~~~~~idG~LVG~ASL 234 (246)
T d1o5xa_ 201 QIRILYGGSV-NTENCSSLIQQEDIDGFLVGNASL 234 (246)
T ss_dssp HSEEEECSCC-CTTTHHHHHTSTTCCEEEECGGGG
T ss_pred cccEEEeCCC-CHhHHHHHhcCCCCCEEEeecccC
Confidence 5899999999 8999999987 4899999999987
|
| >d1dosa_ c.1.10.2 (A:) Fructose-bisphosphate aldolase (FBP aldolase) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Aldolase family: Class II FBP aldolase domain: Fructose-bisphosphate aldolase (FBP aldolase) species: Escherichia coli [TaxId: 562]
Probab=80.22 E-value=17 Score=31.26 Aligned_cols=145 Identities=13% Similarity=0.070 Sum_probs=80.1
Q ss_pred HHHHHhhcCCcEEEEeecCC-CCHHHHHHHHhcC-----------CcEEEEccCCCc--------HHHHHHHHhCCCEEE
Q 020013 55 IRKTRSLTERPFGVGVVLAF-PHNENIKAILSEK-----------VAVLQVSWGEYS--------EELVLEAHSAGVKVV 114 (332)
Q Consensus 55 i~~~r~~~~~p~gvnl~~~~-~~~~~~~~~~~~~-----------~~~I~~~~g~~~--------~~~i~~~~~~g~~v~ 114 (332)
+..+.+..+.|+.+++=--. ...+.++.+++++ .+.|-+.....| .++++.++..|+.|=
T Consensus 93 v~~~a~~~~VPV~lHLDHg~~~~~~~i~~~idag~~~~~~~~~~gfsSVMiDgS~l~~eeNi~~Tk~vve~Ah~~gv~VE 172 (358)
T d1dosa_ 93 VHQMAEHYGVPVILHTDHCAKKLLPWIDGLLDAGEKHFAATGKPLFSSHMIDLSEESLQENIEICSKYLERMSKIGMTLE 172 (358)
T ss_dssp HHHHHHHHTCEEEEEECCCCGGGHHHHHHHHHHHHHHHHHHSSCSCSEEEECCTTSCHHHHHHHHHHHHHHHHHTTCEEE
T ss_pred HHHHHHhCCCCEEEecCccchhhHHHHHHHHHHHHHHHHHhCCCCCccccCCCCcCCHHHHHHHHHHHHHHHhhhCCeEE
Confidence 33343445788888863211 1123455555554 677766533222 245566677777663
Q ss_pred Ee---------------------cCCHHHHHHHH-----HcCCCEEEE-ecC----CCCcccC-CCCchhhhHHHHHHHh
Q 020013 115 PQ---------------------VGSFDEARKAV-----NAGVDAIIV-QGR----EAGGHVI-GQDGLISLLPMVVDLI 162 (332)
Q Consensus 115 ~~---------------------v~s~~~a~~a~-----~~g~D~ivv-~G~----eaGGh~~-~~~~~~~ll~~i~~~~ 162 (332)
.. .++++++.... ..|+|.+-+ -|. .-+|... .+.-.+.++..+.+..
T Consensus 173 aElG~igg~Edg~~~~~~~~~~~~T~peea~~~~~ef~~~tgvD~LAvaiGt~HG~Yk~~~~~l~p~l~~~~~~~i~~~~ 252 (358)
T d1dosa_ 173 IELGCTGGEEDGVDNSHMDASALYTQPEDVDYAYTELSKISPRFTIAASFGNVHGVYKAGNVVLTPTILRDSQEYVSKKH 252 (358)
T ss_dssp EECCCCCCCCCCCSCCCCCCCCCSCCHHHHHHHHHHHHTTCSCEEEECCSSCCCSSCCCSCCCCCTHHHHHHHHHHHHHH
T ss_pred EeeeeeecccCCccccccchhhccCCHHHHHHHHHHHhccCccceeeeeccchhhhcCCCCccCCchhhHHHHHHHHHHh
Confidence 21 35788885322 368998876 232 1111100 0111244455555554
Q ss_pred C--CCCCcEEeec--CcCCHHHHHHHHHcCcceeeecccccc
Q 020013 163 G--DRDIPIIAAG--GIVDARGYVAALSLGAQGICLGTRFVA 200 (332)
Q Consensus 163 ~--~~~iPviaaG--GI~~~~~v~~al~~GA~gV~~GT~fl~ 200 (332)
. ..++|++.-| |+ ..+++.+++..|..-|=++|-+-.
T Consensus 253 ~vp~~~~~LVlHGgSGi-p~e~i~~ai~~GV~KiNi~Tdlr~ 293 (358)
T d1dosa_ 253 NLPHNSLNFVFHGGSGS-TAQEIKDSVSYGVVKMNIDTDTQW 293 (358)
T ss_dssp TCCTTCSCEEECSCTTC-CHHHHHHHHHTTEEEEEECHHHHH
T ss_pred CCCCcccceeccCCCCC-cHHHHHHHHHcCCeEEeeChHHHH
Confidence 1 1133477655 56 567899999999999999988654
|