Citrus Sinensis ID: 020018

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330--
MGKQTTKAMEEYMDGHIQHSRDKNVISKSCRLRFSVGPFTIPSPISEDAKQLILYLFDDKLNTMYDLIYTNCFYDNCICKVCSNIIILLLFVEITPFFHGKREIVVDIGDNSITRSSMRTLLPGEWIDGDIITMYADYKNMKEAEKDVTSPRCWFLPTYYSQAALADWSSLNFAQAAGFRDRYMSRLDTCEKIYVPINSDGHWYMLVVDISHATATIWDSLESPSRREKMINESLAILASLDFVLRQEARALFCNQFTFLNFQICRQAGLPQQPNGFDCGYYVMKYMDSPCIVVHDSYQHDSDHARLLLALYLVQSPLNKIRCRLIQEARKL
ccHHHHHHHHHHHHccccccccccccccccccccccccccccccccHHHHHHHHHHcccccHHHHHHcccccccccccccccHHHHHHHHHHHcccccccccEEEEEcccEEEEccccccccccccccHHHHHHHHHHHHHHHHccccccccEEEccHHHHHHHHcccccHHHHHHHHHHHHccccccccccEEEEEcccccEEEEEEEcccccEEEEccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccEEEccccccccccccccHHHHHHHHccccccccccccccHHHHHHHHHHHHHcccccHHHHHHHHHHHcc
ccccHHHHHHHHHccccEEcccccEEcccEEEEEEcccccccccccHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHcccccEEEcccccEEcHHHHHHHcccccccHHHHHHHHHHHHHHHccccccccEEEEEEccccHHHHHHHHHHHHHHHHHHHHHccccEEcccEEEEEEEcccEEEEEEEEccccEEEEEEccccccccHHHHHHHHHHHHHHHHHHHcccccccccccccccccEccHcccccccccccHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc
MGKQTTKAMEEYMDGhiqhsrdknviskscrlrfsvgpftipspisEDAKQLILYLFDDKLNTMYDLIYtncfydncickVCSNIIILLLFVEitpffhgkreivvdigdnsitrssmrtllpgewidgdiITMYADYKNmkeaekdvtsprcwflptyysqaaLADWSSLNFAQAAGFRDRYMSRLdtcekiyvpinsdgHWYMLVVDISHATATIwdslespsrrEKMINESLAILASLDFVLRQEARALFCNQFTFLNFQICrqaglpqqpngfdcGYYVMKymdspcivvhdsyqhdsDHARLLLALYLVQSPLNKIRCRLIQEARKL
MGKQTTKAMEEYmdghiqhsrdknvISKSCRLRFSVGpftipspiseDAKQLILYLFDDKLNTMYDLIYTNCFYDNCICKVCSNIIILLLFVEITPFFHGKREIvvdigdnsitrssmrtllpgewidgDIITMYADYKNMKEAEKDVTSPRCWFLPTYYSQAALADWSSLNFAQAAGFRDRYMSRLDTCEKIYVPINSDGHWYMLVVDISHATATIWDSLESPSRREKMINESLAILASLDFVLRQEARALFCNQFTFLNFQICRQAGLPQQPNGFDCGYYVMKYMDSPCIVVHDSYQHDSDHARLLLALYlvqsplnkIRCRLIQEARKL
MGKQTTKAMEEYMDGHIQHSRDKNVISKSCRLRFSVGPFTIPSPISEDAKQLILYLFDDKLNTMYDLIYTNCFYDNCICKVCSNIIILLLFVEITPFFHGKREIVVDIGDNSITRSSMRTLLPGEWIDGDIITMYADYKNMKEAEKDVTSPRCWFLPTYYSQAALADWSSLNFAQAAGFRDRYMSRLDTCEKIYVPINSDGHWYMLVVDISHATATIWDSLESPSRREKMINESLAILASLDFVLRQEARALFCNQFTFLNFQICRQAGLPQQPNGFDCGYYVMKYMDSPCIVVHDSYQHDSDHARLLLALYLVQSPLNKIRCRLIQEARKL
************************VISKSCRLRFSVGPFTIPSPISEDAKQLILYLFDDKLNTMYDLIYTNCFYDNCICKVCSNIIILLLFVEITPFFHGKREIVVDIGDNSITRSSMRTLLPGEWIDGDIITMYADYKNMKEAEKDVTSPRCWFLPTYYSQAALADWSSLNFAQAAGFRDRYMSRLDTCEKIYVPINSDGHWYMLVVDISHATATIWDSL********MINESLAILASLDFVLRQEARALFCNQFTFLNFQICRQAGLPQQPNGFDCGYYVMKYMDSPCIVVHDSYQHDSDHARLLLALYLVQSPLNKIRCRLI******
*******************************************************************IYTNCFYDNCICKVCSNIII******************VDIGDNSITRSSMRTLLPGEWIDGDIITMYADYKNMKEAEKDVTSPRCWFLPTYYSQAALADWSSLNFAQAAGFRDRYMSRLDTCEKIYVPINSDGHWYMLVVDISHATATIWDSLES*****KMINESLAILASLDFVLRQEARALFCNQFTFLNFQICRQAGLPQQPNGFDCGYYVMKYMDSPCIVVHDSYQHDSDHARLLLALYLVQSPLNKIRCRLIQE****
********MEEYMDGHIQHSRDKNVISKSCRLRFSVGPFTIPSPISEDAKQLILYLFDDKLNTMYDLIYTNCFYDNCICKVCSNIIILLLFVEITPFFHGKREIVVDIGDNSITRSSMRTLLPGEWIDGDIITMYADYKNMKEAEKDVTSPRCWFLPTYYSQAALADWSSLNFAQAAGFRDRYMSRLDTCEKIYVPINSDGHWYMLVVDISHATATIWDSLESPSRREKMINESLAILASLDFVLRQEARALFCNQFTFLNFQICRQAGLPQQPNGFDCGYYVMKYMDSPCIVVHDSYQHDSDHARLLLALYLVQSPLNKIRCRLIQEARKL
******K**EEYMDGHIQHSRDKNVISKSCRLRFSVGPFTIPSPISEDAKQLILYLFDDKLNTMYDLIYTNCFYDNCICKVCSNIIILLLFVEITPFFHGKREIVVDIGDNSITRSSMRTLLPGEWIDGDIITMYADYKNMKEAEKDVTSPRCWFLPTYYSQAALADWSSLNFAQAAGFRDRYMSRLDTCEKIYVPINSDGHWYMLVVDISHATATIWDSLESPSRREKMINESLAILASLDFVLRQEARALFCNQFTFLNFQICRQAGLPQQPNGFDCGYYVMKYMDSPCIVVHDSYQHDSDHARLLLALYLVQSPLNKIRCRLIQEARKL
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SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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MGKQTTKAMEEYMDGHIQHSRDKNVISKSCRLRFSVGPFTIPSPISEDAKQLILYLFDDKLNTMYDLIYTNCFYDNCICKVCSNIIILLLFVEITPFFHGKREIVVDIGDNSITRSSMRTLLPGEWIDGDIITMYADYKNMKEAEKDVTSPRCWFLPTYYSQAALADWSSLNFAQAAGFRDRYMSRLDTCEKIYVPINSDGHWYMLVVDISHATATIWDSLESPSRREKMINESLAILASLDFVLRQEARALFCNQFTFLNFQICRQAGLPQQPNGFDCGYYVMKYMDSPCIVVHDSYQHDSDHARLLLALYLVQSPLNKIRCRLIQEARKL
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query332 2.2.26 [Sep-21-2011]
Q8GYL3502 Ubiquitin-like-specific p yes no 0.466 0.308 0.273 5e-11
Q94F30489 Ubiquitin-like-specific p no no 0.563 0.382 0.246 2e-09
Q02724621 Ubiquitin-like-specific p yes no 0.436 0.233 0.289 3e-09
O65278341 Putative ubiquitin-like-s no no 0.503 0.489 0.224 1e-07
Q9P0U3644 Sentrin-specific protease yes no 0.484 0.25 0.263 8e-07
Q5RBB1645 Sentrin-specific protease yes no 0.484 0.249 0.263 8e-07
P59110640 Sentrin-specific protease yes no 0.512 0.265 0.256 1e-06
Q9HC62589 Sentrin-specific protease no no 0.503 0.283 0.241 0.0004
>sp|Q8GYL3|ULP1A_ARATH Ubiquitin-like-specific protease 1A OS=Arabidopsis thaliana GN=ULP1A PE=2 SV=2 Back     alignment and function desciption
 Score = 68.9 bits (167), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 52/190 (27%), Positives = 85/190 (44%), Gaps = 35/190 (18%)

Query: 113 ITRSSMRTLLPGEWIDGDIITMYADYKNMKEAEKDVTSPRCWFLPTY-----------YS 161
           IT   +R L PG+W++ ++I +Y      +EA +     +C F  T+           Y+
Sbjct: 302 ITGKILRCLKPGKWLNDEVINLYMVLLKEREAREPKKFLKCHFFNTFFFTKLVNSATGYN 361

Query: 162 QAALADWSSLNFAQAAGFRDRYMSRLDTCEKIYVPINSDGHWYMLVVDISHATATIWDSL 221
             A+  W+S+          R    L  C+KI++PI+ + HW + V++I        DS 
Sbjct: 362 YGAVRRWTSMK---------RLGYHLKDCDKIFIPIHMNIHWTLAVINIKDQKFQYLDSF 412

Query: 222 ESPSRREKMINESLAILASLDFVLRQEARALFCNQFTFLNFQICRQA---GLPQQPNGFD 278
           +    RE  I ++LA     +   + E           L+    RQ     LP Q NGFD
Sbjct: 413 KG---REPKILDALARYFVDEVRDKSEVD---------LDVSRWRQEFVQDLPMQRNGFD 460

Query: 279 CGYYVMKYMD 288
           CG +++KY+D
Sbjct: 461 CGMFMVKYID 470
Protease that catalyzes two essential functions in the SUMO pathway: processing of full-length SUMOs to their mature forms and deconjugation of SUMO from targeted proteins. Cleaves precursors of SUM1 and SUM2, and very inefficiently of SUM3. Seems to be the only ULP1 able to cleave SUM3 precursors. Cleaves SUMO peptides better than SUMO-conjugated proteins.
Arabidopsis thaliana (taxid: 3702)
EC: 3EC: .EC: 4EC: .EC: 2EC: 2EC: .EC: 6EC: 8
>sp|Q94F30|ESD4_ARATH Ubiquitin-like-specific protease ESD4 OS=Arabidopsis thaliana GN=ESD4 PE=1 SV=1 Back     alignment and function description
>sp|Q02724|ULP1_YEAST Ubiquitin-like-specific protease 1 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=ULP1 PE=1 SV=1 Back     alignment and function description
>sp|O65278|ULP1B_ARATH Putative ubiquitin-like-specific protease 1B OS=Arabidopsis thaliana GN=ULP1B PE=5 SV=2 Back     alignment and function description
>sp|Q9P0U3|SENP1_HUMAN Sentrin-specific protease 1 OS=Homo sapiens GN=SENP1 PE=1 SV=2 Back     alignment and function description
>sp|Q5RBB1|SENP1_PONAB Sentrin-specific protease 1 OS=Pongo abelii GN=SENP1 PE=2 SV=1 Back     alignment and function description
>sp|P59110|SENP1_MOUSE Sentrin-specific protease 1 OS=Mus musculus GN=Senp1 PE=2 SV=1 Back     alignment and function description
>sp|Q9HC62|SENP2_HUMAN Sentrin-specific protease 2 OS=Homo sapiens GN=SENP2 PE=1 SV=3 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query332
224132816191 predicted protein [Populus trichocarpa] 0.448 0.780 0.352 3e-17
224115366191 predicted protein [Populus trichocarpa] 0.448 0.780 0.352 5e-17
357483793 501 hypothetical protein MTR_5g022270 [Medic 0.638 0.423 0.286 1e-13
224157122199 predicted protein [Populus trichocarpa] 0.584 0.974 0.216 4e-11
294462241209 unknown [Picea sitchensis] 0.478 0.760 0.25 7e-10
410076034 573 hypothetical protein KAFR_0B01650 [Kazac 0.418 0.242 0.319 1e-09
297833464 468 hypothetical protein ARALYDRAFT_896836 [ 0.475 0.337 0.283 1e-09
226491998 500 SUMO protease [Zea mays] gi|195607252|gb 0.548 0.364 0.266 2e-09
224057408 1571 predicted protein [Populus trichocarpa] 0.469 0.099 0.217 2e-09
224115352 567 predicted protein [Populus trichocarpa] 0.463 0.271 0.219 2e-09
>gi|224132816|ref|XP_002327887.1| predicted protein [Populus trichocarpa] gi|222837296|gb|EEE75675.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
 Score = 95.9 bits (237), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 55/156 (35%), Positives = 84/156 (53%), Gaps = 7/156 (4%)

Query: 179 FRDRYMSRLDTCEKIYVPI--NSDGHWYMLVVDISHATATIWDSL--ESPSRREKMINES 234
           FR+ YMS L +CEK+YVP+      H+Y+ V+ +      IWDSL   S S  +K +   
Sbjct: 2   FRENYMSALFSCEKMYVPVFDKERRHFYLFVLHMKKQVVEIWDSLAKSSGSSVDKRLPNM 61

Query: 235 LAILASLDFVLRQEARALFCNQFTFLNFQICRQAGLPQQPNGFDCGYYVMKYMDSPCIVV 294
           LAIL   D +   + +  + + ++F +F + R   +PQQ NG+DCG YV+K+M +P    
Sbjct: 62  LAIL---DILFEDDIQQNYPDGWSFASFSVDRSPNVPQQTNGYDCGVYVIKFMLAPEEAT 118

Query: 295 HDSYQHDSDHARLLLALYLVQSPLNKIRCRLIQEAR 330
              +  DSD  RL + L L+   +N  R  L  +A 
Sbjct: 119 QPDFVFDSDTERLDVVLRLLDGNVNSCRNELAAKAE 154

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|224115366|ref|XP_002332178.1| predicted protein [Populus trichocarpa] gi|222832426|gb|EEE70903.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|357483793|ref|XP_003612183.1| hypothetical protein MTR_5g022270 [Medicago truncatula] gi|355513518|gb|AES95141.1| hypothetical protein MTR_5g022270 [Medicago truncatula] Back     alignment and taxonomy information
>gi|224157122|ref|XP_002337805.1| predicted protein [Populus trichocarpa] gi|222869833|gb|EEF06964.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|294462241|gb|ADE76671.1| unknown [Picea sitchensis] Back     alignment and taxonomy information
>gi|410076034|ref|XP_003955599.1| hypothetical protein KAFR_0B01650 [Kazachstania africana CBS 2517] gi|372462182|emb|CCF56464.1| hypothetical protein KAFR_0B01650 [Kazachstania africana CBS 2517] Back     alignment and taxonomy information
>gi|297833464|ref|XP_002884614.1| hypothetical protein ARALYDRAFT_896836 [Arabidopsis lyrata subsp. lyrata] gi|297330454|gb|EFH60873.1| hypothetical protein ARALYDRAFT_896836 [Arabidopsis lyrata subsp. lyrata] Back     alignment and taxonomy information
>gi|226491998|ref|NP_001147104.1| SUMO protease [Zea mays] gi|195607252|gb|ACG25456.1| SUMO protease [Zea mays] Back     alignment and taxonomy information
>gi|224057408|ref|XP_002299224.1| predicted protein [Populus trichocarpa] gi|222846482|gb|EEE84029.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|224115352|ref|XP_002332175.1| predicted protein [Populus trichocarpa] gi|222832423|gb|EEE70900.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query332
TAIR|locus:2130864489 ESD4 "EARLY IN SHORT DAYS 4" [ 0.560 0.380 0.262 2e-10
TAIR|locus:2077632502 ULP1A "UB-like protease 1A" [A 0.503 0.332 0.275 2.1e-10
DICTYBASE|DDB_G0292290769 DDB_G0292290 "Sentrin-specific 0.542 0.234 0.25 4.6e-10
UNIPROTKB|F1NYU6247 F1NYU6 "Uncharacterized protei 0.484 0.651 0.261 8.4e-08
UNIPROTKB|E1BYD7454 E1BYD7 "Uncharacterized protei 0.484 0.354 0.261 4.3e-07
RGD|1310275640 Senp1 "SUMO1/sentrin specific 0.521 0.270 0.275 5.7e-07
FB|FBgn0031208480 CG11023 [Drosophila melanogast 0.569 0.393 0.242 6.1e-07
UNIPROTKB|F1SGU9628 SENP1 "Uncharacterized protein 0.527 0.278 0.263 1.2e-06
MGI|MGI:2445054640 Senp1 "SUMO1/sentrin specific 0.527 0.273 0.263 1.2e-06
UNIPROTKB|Q9P0U3644 SENP1 "Sentrin-specific protea 0.527 0.271 0.263 1.2e-06
TAIR|locus:2130864 ESD4 "EARLY IN SHORT DAYS 4" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 174 (66.3 bits), Expect = 2.0e-10, P = 2.0e-10
 Identities = 53/202 (26%), Positives = 95/202 (47%)

Query:    93 EITPFFHGK-REIVVDIGDNS---ITRSSMRTLLPGEWIDGDIITMYADYKNMKEAEKDV 148
             E+   F G+ R  V+   +NS   IT   ++ L P  W++ ++I +Y +    +E  +  
Sbjct:   266 EVYRAFSGRNRRKVLATHENSNIDITGEVLQCLTPSAWLNDEVINVYLELLKERETREPK 325

Query:   149 TSPRCWFLPTYYSQAALADWSSLNFAQAAGFR-DRYMS-RLDTCEKIYVPINSDGHWYML 206
                +C +  T++ +  ++D S  NF     +   R +   L  C+ I+VPI+   HW + 
Sbjct:   326 KYLKCHYFNTFFYKKLVSD-SGYNFKAVRRWTTQRKLGYALIDCDMIFVPIHRGVHWTLA 384

Query:   207 VVDISHATATIWDSLESPSRREKMINESLAILASLDFVLRQEARALFCNQFTFLNFQICR 266
             V++   +     DSL      + MI  +LA     D    +  + +  N +  + F    
Sbjct:   385 VINNRESKLLYLDSLNGV---DPMILNALAKYMG-DEANEKSGKKIDANSWD-MEFV--- 436

Query:   267 QAGLPQQPNGFDCGYYVMKYMD 288
                LPQQ NG+DCG +++KY+D
Sbjct:   437 -EDLPQQKNGYDCGMFMLKYID 457
GO:0005634 "nucleus" evidence=ISM;IDA
GO:0006508 "proteolysis" evidence=IEA;ISS
GO:0008234 "cysteine-type peptidase activity" evidence=IEA;ISS
GO:0009909 "regulation of flower development" evidence=RCA;IMP
GO:0009911 "positive regulation of flower development" evidence=IMP
GO:0016929 "SUMO-specific protease activity" evidence=IDA
GO:0016926 "protein desumoylation" evidence=IDA
GO:0006406 "mRNA export from nucleus" evidence=RCA
GO:0010074 "maintenance of meristem identity" evidence=RCA
GO:0010413 "glucuronoxylan metabolic process" evidence=RCA
GO:0045492 "xylan biosynthetic process" evidence=RCA
TAIR|locus:2077632 ULP1A "UB-like protease 1A" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
DICTYBASE|DDB_G0292290 DDB_G0292290 "Sentrin-specific protease 1" [Dictyostelium discoideum (taxid:44689)] Back     alignment and assigned GO terms
UNIPROTKB|F1NYU6 F1NYU6 "Uncharacterized protein" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms
UNIPROTKB|E1BYD7 E1BYD7 "Uncharacterized protein" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms
RGD|1310275 Senp1 "SUMO1/sentrin specific peptidase 1" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
FB|FBgn0031208 CG11023 [Drosophila melanogaster (taxid:7227)] Back     alignment and assigned GO terms
UNIPROTKB|F1SGU9 SENP1 "Uncharacterized protein" [Sus scrofa (taxid:9823)] Back     alignment and assigned GO terms
MGI|MGI:2445054 Senp1 "SUMO1/sentrin specific peptidase 1" [Mus musculus (taxid:10090)] Back     alignment and assigned GO terms
UNIPROTKB|Q9P0U3 SENP1 "Sentrin-specific protease 1" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

Prediction LevelEC numberConfidence of Prediction
3rd Layer3.4.220.691
3rd Layer3.4.22.68LOW CONFIDENCE prediction!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
grail3.0064012001
hypothetical protein (191 aa)
(Populus trichocarpa)
Predicted Functional Partners:
 
Sorry, there are no predicted associations at the current settings.
 

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query332
pfam02902216 pfam02902, Peptidase_C48, Ulp1 protease family, C- 4e-15
PLN03189490 PLN03189, PLN03189, Protease specific for SMALL UB 2e-13
COG5160578 COG5160, ULP1, Protease, Ulp1 family [Posttranslat 1e-11
>gnl|CDD|217278 pfam02902, Peptidase_C48, Ulp1 protease family, C-terminal catalytic domain Back     alignment and domain information 
 Score = 72.9 bits (179), Expect = 4e-15
 Identities = 37/99 (37%), Positives = 52/99 (52%), Gaps = 3/99 (3%)

Query: 190 CEKIYVPINSDG-HWYMLVVDISHATATIWDSLESPSRREKMINESLAILASLDFVLRQE 248
            + IY+PIN DG HW +L++++   T TI DSL S    E +      I   L + L  E
Sbjct: 83  VDIIYIPINWDGKHWVLLIINLPKKTITILDSLISL-HTEAVKKRIRPIDNMLPY-LMSE 140

Query: 249 ARALFCNQFTFLNFQICRQAGLPQQPNGFDCGYYVMKYM 287
           A     +      F+I R   +PQQPN  DCG YV+K++
Sbjct: 141 ALKKEQDDPDLTPFEIKRLTKVPQQPNSGDCGPYVLKFI 179

This domain contains the catalytic triad Cys-His-Asn. Length = 216
>gnl|CDD|215622 PLN03189, PLN03189, Protease specific for SMALL UBIQUITIN-RELATED MODIFIER (SUMO); Provisional Back     alignment and domain information
>gnl|CDD|227489 COG5160, ULP1, Protease, Ulp1 family [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 332
KOG0778511 consensus Protease, Ulp1 family [Posttranslational 100.0
PLN03189490 Protease specific for SMALL UBIQUITIN-RELATED MODI 100.0
COG5160578 ULP1 Protease, Ulp1 family [Posttranslational modi 100.0
KOG3246223 consensus Sentrin-specific cysteine protease (Ulp1 99.97
PF02902216 Peptidase_C48: Ulp1 protease family, C-terminal ca 99.97
KOG0779595 consensus Protease, Ulp1 family [Posttranslational 99.25
PF03290423 Peptidase_C57: Vaccinia virus I7 processing peptid 97.44
PRK11836403 deubiquitinase; Provisional 97.19
PRK14848317 deubiquitinase SseL; Provisional 96.8
PF00770183 Peptidase_C5: Adenovirus endoprotease; InterPro: I 96.59
>KOG0778 consensus Protease, Ulp1 family [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information 
Probab=100.00  E-value=5.8e-46  Score=361.89  Aligned_cols=257  Identities=23%  Similarity=0.308  Sum_probs=208.7

Q ss_pred             CCCCHHHHHhhhhhhhcccccccceeeecc-cccccccc---cchhhhhhhhhhc---ccccc--cCCcceEEeeCCeee
Q 020018           43 SPISEDAKQLILYLFDDKLNTMYDLIYTNC-FYDNCICK---VCSNIIILLLFVE---ITPFF--HGKREIVVDIGDNSI  113 (332)
Q Consensus        43 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~---~~~~~~~~~~~~~---~~~~~--~~~~~vlv~~~~~~L  113 (332)
                      .+.=||+......+-.....+.+.++++.- .-....++   .-..-++++...+   ++...  ..+.++++..+++.|
T Consensus       241 ~~~~ee~~s~~~~~~~e~~~~~~~~i~l~~~~~k~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~I  320 (511)
T KOG0778|consen  241 EKSLEELVSDLKSLRFEIFQKRGELIPLRSVQEKLEKPKVEVKKEDSFPPLTEEREAQVQRAFSSRNSTEILVTHFNIDI  320 (511)
T ss_pred             hhhHHHHHHHHHHhhhhhcccccccchhhhhhcccccccccccCccccccccHHHHHHHHHHhccCCcccceehhccccc
Confidence            455566666666666666677777776542 11111110   0011223333332   22222  346788889999999


Q ss_pred             ehhhhhccCCCCCcCHHHHHHHHhhhhHHhhhhcC-CCCcEEEECchhHHHhhhccccchhHhhhhhhhhccCCcCCCCe
Q 020018          114 TRSSMRTLLPGEWIDGDIITMYADYKNMKEAEKDV-TSPRCWFLPTYYSQAALADWSSLNFAQAAGFRDRYMSRLDTCEK  192 (332)
Q Consensus       114 ~~~Dl~~L~~~~WLND~IIn~y~~~lnl~~~~~~~-~~~~~~~~~s~f~~~l~~~~~~~~~~~v~rw~~~~~~~l~~~~~  192 (332)
                      |.+||+||.+++||||+|||||+++  |+++..+. ..+++|+||||||++|..    .+|+.|+|||+  +++++++++
T Consensus       321 t~~dl~tl~~~~WLNDevINfYm~l--l~ers~~~~~yp~~h~FnTFFy~kL~~----~gy~~VkRWTk--~v~if~~d~  392 (511)
T KOG0778|consen  321 TGKDLQTLRPGNWLNDEVINFYMEL--LKERSKKDSKYPKVHAFNTFFYTKLVG----RGYAGVKRWTK--KVDIFDKDI  392 (511)
T ss_pred             cHHHHhhccCccchhHHHHHHHHHH--HHhhccccCCCceEEEEechhhhhhhh----cchHHHHhHhh--ccCccccce
Confidence            9999999999999999999999999  98887653 378999999999999997    78999999999  899999999


Q ss_pred             eEEeEcCCCceeEEEEEecCcceeeecCCCCCChhhHhhHHHHHHHHHHHHHHHHHHHhhhcCccccccceeecCCCCCC
Q 020018          193 IYVPINSDGHWYMLVVDISHATATIWDSLESPSRREKMINESLAILASLDFVLRQEARALFCNQFTFLNFQICRQAGLPQ  272 (332)
Q Consensus       193 I~iPIn~~~HW~L~vVd~~~~~I~~yDSL~~~~~~~~rl~~~~~i~~~L~~~l~~e~~~~~~~~~~~~~w~~~~~~~vPq  272 (332)
                      ||||||-+.||+|+|||.++++|.|||||++.....         +..|++||.+|+.++.+.++|.+.|.+....++||
T Consensus       393 i~vPIH~~vHW~l~vid~r~k~i~y~DS~~~~~nr~---------~~aL~~Yl~~E~~~k~~~~~d~s~w~~~~~~~iP~  463 (511)
T KOG0778|consen  393 IFVPIHLGVHWCLAVIDLREKTIEYYDSLGGGPNRI---------CDALAKYLQDESRDKSKKDFDVSGWTIEFVQNIPQ  463 (511)
T ss_pred             eEeeeecCceEEEEEEEcccceEEEeeccCCCCcch---------HHHHHHHHHHHHhhhhcCCCCccchhhhhhhcccc
Confidence            999999999999999999999999999999765443         46799999999999999999999999988899999


Q ss_pred             CCCCCChHHHHHHHhHhhccccCCCCC-CCChHHHHHHHHHHhhc
Q 020018          273 QPNGFDCGYYVMKYMDSPCIVVHDSYQ-HDSDHARLLLALYLVQS  316 (332)
Q Consensus       273 Q~Ng~DCGvfvl~~~e~l~~~~~~~~~-~d~~~~R~~la~~L~~~  316 (332)
                      |.||+|||+|+|+|++|++.+.+..|+ .|||++|.+||.+|+..
T Consensus       464 Q~Ng~DCG~f~c~~~~~~s~~~p~~ftq~dmp~fR~~m~~eI~~~  508 (511)
T KOG0778|consen  464 QRNGSDCGMFVCKYADYISRDVPLTFTQQDMPYFRKKMAKEILHL  508 (511)
T ss_pred             ccCCCccceEEeeechhhccCCCcccChhhhHHHHHHHHHHHHhh
Confidence            999999999999999999988888885 67899999999988754

>PLN03189 Protease specific for SMALL UBIQUITIN-RELATED MODIFIER (SUMO); Provisional Back     alignment and domain information
>COG5160 ULP1 Protease, Ulp1 family [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG3246 consensus Sentrin-specific cysteine protease (Ulp1 family) [General function prediction only] Back     alignment and domain information
>PF02902 Peptidase_C48: Ulp1 protease family, C-terminal catalytic domain This family belongs to family C48 of the peptidase classification Back     alignment and domain information
>KOG0779 consensus Protease, Ulp1 family [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PF03290 Peptidase_C57: Vaccinia virus I7 processing peptidase; InterPro: IPR004970 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families Back     alignment and domain information
>PRK11836 deubiquitinase; Provisional Back     alignment and domain information
>PRK14848 deubiquitinase SseL; Provisional Back     alignment and domain information
>PF00770 Peptidase_C5: Adenovirus endoprotease; InterPro: IPR000855 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query332
1euv_A221 X-Ray Structure Of The C-Terminal Ulp1 Protease Dom 1e-10
2hkp_A221 Sumo Protease Ulp1 With The Catalytic Cysteine Oxid 2e-09
2ckg_A225 The Structure Of Senp1 Sumo-2 Co-Complex Suggests A 4e-09
2iyc_A226 Senp1 Native Structure Length = 226 2e-08
2xre_A230 Detection Of Cobalt In Previously Unassigned Human 2e-08
2xph_A238 Crystal Structure Of Human Senp1 With The Bound Cob 2e-08
2iy0_A226 Senp1 (Mutant) Sumo1 Rangap Length = 226 2e-07
2g4d_A205 Crystal Structure Of Human Senp1 Mutant (C603s) In 2e-07
1tgz_A226 Structure Of Human Senp2 In Complex With Sumo-1 Len 1e-05
2io0_A232 Crystal Structure Of Human Senp2 In Complex With Pr 1e-04
>pdb|1EUV|A Chain A, X-Ray Structure Of The C-Terminal Ulp1 Protease Domain In Complex With Smt3, The Yeast Ortholog Of Sumo Length = 221 Back     alignment and structure 
Iteration: 1

 Score = 63.9 bits (154), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 51/177 (28%), Positives = 81/177 (45%), Gaps = 31/177 (17%)
Query: 112 SITRSSMRTLLPGEWIDGDIITMYADYKNMKEAEKDVTSPRCWFLPTYYSQAALADWSSL 171
            IT    +TL P  W++  II  +     MK  EK  ++P      +++       +++L
Sbjct: 34  EITVRDFKTLAPRRWLNDTIIEFF-----MKYIEK--STPNTVAFNSFF-------YTNL 79
Query: 172 NFAQAAGFRDRYMSR----LDTCEKIYVPIN-SDGHWYMLVVDISHATATIWDSLESPSR 226
           +     G R R+M R    +D  +KI+ PIN +  HW + ++D+   T    DSL +   
Sbjct: 80  SERGYQGVR-RWMKRKKTQIDKLDKIFTPINLNQSHWALGIIDLKKKTIGYVDSLSNGPN 138
Query: 227 REKMINESLAILASLDFVLRQEARALFCNQFTFLNFQICRQAGLPQQPNGFDCGYYV 283
                  S AIL  L   + +E++      F  ++   C     PQQPNG+DCG YV
Sbjct: 139 AM-----SFAILTDLQKYVMEESKHTIGEDFDLIHLD-C-----PQQPNGYDCGIYV 184
>pdb|2HKP|A Chain A, Sumo Protease Ulp1 With The Catalytic Cysteine Oxidized To A Sulfenic Acid Length = 221 Back     alignment and structure
>pdb|2CKG|A Chain A, The Structure Of Senp1 Sumo-2 Co-Complex Suggests A Structural Basis For Discrimination Between Sumo Paralogues During Processing Length = 225 Back     alignment and structure
>pdb|2IYC|A Chain A, Senp1 Native Structure Length = 226 Back     alignment and structure
>pdb|2XRE|A Chain A, Detection Of Cobalt In Previously Unassigned Human Senp1 Structure Length = 230 Back     alignment and structure
>pdb|2XPH|A Chain A, Crystal Structure Of Human Senp1 With The Bound Cobalt Length = 238 Back     alignment and structure
>pdb|2IY0|A Chain A, Senp1 (Mutant) Sumo1 Rangap Length = 226 Back     alignment and structure
>pdb|2G4D|A Chain A, Crystal Structure Of Human Senp1 Mutant (C603s) In Complex With Sumo-1 Length = 205 Back     alignment and structure
>pdb|1TGZ|A Chain A, Structure Of Human Senp2 In Complex With Sumo-1 Length = 226 Back     alignment and structure
>pdb|2IO0|A Chain A, Crystal Structure Of Human Senp2 In Complex With Presumo-2 Length = 232 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query332
2xph_A238 Sentrin-specific protease 1; hydrolase, cysteine p 9e-23
1th0_A226 SMT3-, sentrin-specific protease 2; SUMO, AXAM, SE 4e-19
1euv_A221 ULP1 protease; SUMO hydrolase, ubiquitin-like prot 1e-18
2oix_A186 Xanthomonas outer protein D; CLAN CE family 48 cys 5e-15
2bkr_A212 Sentrin-specific protease 8; protein-binding-hydro 3e-13
3eay_A323 Sentrin-specific protease 7; ULP, SENP, SUMO, ubiq 4e-08
>2xph_A Sentrin-specific protease 1; hydrolase, cysteine protease, thiol protease; 2.40A {Homo sapiens} PDB: 2xre_A 2iyc_A 2iyd_A 2iy1_A 2iy0_A 2ckg_A 2ckh_A 2g4d_A Length = 238 Back     alignment and structure
 Score = 94.1 bits (233), Expect = 9e-23
 Identities = 47/222 (21%), Positives = 90/222 (40%), Gaps = 22/222 (9%)

Query: 101 KREIVVDIGDNSITRSSMRTLLPGEWIDGDIITMYADYKNMKEAEKDVTSPRCWFLPTY- 159
           + E++ +    +ITR  ++TL    W++ +II  Y +   + E  K+   P      T+ 
Sbjct: 34  QDEVLSEAFRLTITRKDIQTLNHLNWLNDEIINFYMNM--LMERSKEKGLPSVHAFNTFF 91

Query: 160 YSQAALADWSSLNFAQAAGFRDRYMSRLDTCEKIYVPINSDGHWYMLVVDISHATATIWD 219
           +++   A + ++        R      + + + + VPI+   HW + VVD      T +D
Sbjct: 92  FTKLKTAGYQAVK-------RWTKKVDVFSVDILLVPIHLGVHWCLAVVDFRKKNITYYD 144

Query: 220 SLESPSRREKMINESLAILASLDFVLRQEARALFCNQFTFLNFQIC--RQAGLPQQPNGF 277
           S+   +     I             L+QE+      +F    +Q+   +   +PQQ NG 
Sbjct: 145 SMGGINNEACRILLQY---------LKQESIDKKRKEFDTNGWQLFSKKSQEIPQQMNGS 195

Query: 278 DCGYYVMKYMDSPCIVVHDSY-QHDSDHARLLLALYLVQSPL 318
           DCG +  KY D        ++ Q    + R  +   ++   L
Sbjct: 196 DCGMFACKYADCITKDRPINFTQQHMPYFRKRMVWEILHRKL 237
>1th0_A SMT3-, sentrin-specific protease 2; SUMO, AXAM, SENP, ULP, cell cycle, hydrolase; 2.20A {Homo sapiens} SCOP: d.3.1.7 PDB: 1tgz_A 2io0_A 2io1_A 2io2_A 2io3_A Length = 226 Back     alignment and structure
>1euv_A ULP1 protease; SUMO hydrolase, ubiquitin-like protease 1, SMT3 hydrolase desumoylating enzyme, cysteine protease; 1.60A {Saccharomyces cerevisiae} SCOP: d.3.1.7 PDB: 2hkp_A 2hl8_A 2hl9_A Length = 221 Back     alignment and structure
>2oix_A Xanthomonas outer protein D; CLAN CE family 48 cysteine protease, type III secreted effec desumoylating enzyme; 1.80A {Xanthomonas euvesicatoria} PDB: 2oiv_A Length = 186 Back     alignment and structure
>2bkr_A Sentrin-specific protease 8; protein-binding-hydrolase complex, ubiquitin, hydrolase, Pro thiol protease, UBL conjugation pathway, ubiquitin/hydrolas complex; 1.90A {Homo sapiens} SCOP: d.3.1.7 PDB: 2bkq_A 1xt9_A Length = 212 Back     alignment and structure
>3eay_A Sentrin-specific protease 7; ULP, SENP, SUMO, ubiquitin, crystal, alternative splicing, hydrolase, phosphoprotein, polymorphism, thiol protease; 2.40A {Homo sapiens} Length = 323 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query332
1th0_A226 SMT3-, sentrin-specific protease 2; SUMO, AXAM, SE 100.0
2xph_A238 Sentrin-specific protease 1; hydrolase, cysteine p 100.0
1euv_A221 ULP1 protease; SUMO hydrolase, ubiquitin-like prot 100.0
3eay_A323 Sentrin-specific protease 7; ULP, SENP, SUMO, ubiq 100.0
2bkr_A212 Sentrin-specific protease 8; protein-binding-hydro 100.0
2oix_A186 Xanthomonas outer protein D; CLAN CE family 48 cys 99.97
4ekf_A204 Adenain; alpha and beta protein (A+B), hydrolase; 97.13
>1th0_A SMT3-, sentrin-specific protease 2; SUMO, AXAM, SENP, ULP, cell cycle, hydrolase; 2.20A {Homo sapiens} SCOP: d.3.1.7 PDB: 1tgz_A 2io0_A 2io1_A 2io2_A 2io3_A Back     alignment and structure
Probab=100.00  E-value=1.3e-43  Score=321.11  Aligned_cols=202  Identities=22%  Similarity=0.342  Sum_probs=177.4

Q ss_pred             cCCcceEEeeCCeeeehhhhhccCCCCCcCHHHHHHHHhhhhHHhhhhcCCCCcEEEECchhHHHhhhccccchhHhhhh
Q 020018           99 HGKREIVVDIGDNSITRSSMRTLLPGEWIDGDIITMYADYKNMKEAEKDVTSPRCWFLPTYYSQAALADWSSLNFAQAAG  178 (332)
Q Consensus        99 ~~~~~vlv~~~~~~L~~~Dl~~L~~~~WLND~IIn~y~~~lnl~~~~~~~~~~~~~~~~s~f~~~l~~~~~~~~~~~v~r  178 (332)
                      +++++++++++++.|+.+|+.+|.+++||||+|||||+++  |.++..+...+++++|+|+|++++..    .+|.++++
T Consensus        20 ~~~~~~~~~~~~~~l~~~Dl~~L~~~~wLND~iI~fy~~~--L~~~~~~~~~~~~~~f~s~f~~~l~~----~~~~~v~~   93 (226)
T 1th0_A           20 GPQDEILSSAFKLRITRGDIQTLKNYHWLNDEVINFYMNL--LVERNKKQGYPALHVFSTFFYPKLKS----GGYQAVKR   93 (226)
T ss_dssp             SCTTCEEEEETTEEEEHHHHGGGSTTCCCCHHHHHHHHHH--HHHHHHHHTCCCEEECCTTHHHHHHH----HTGGGTGG
T ss_pred             CCccceeeccCCeEEEHHHHhhcCCCCccChHHHHHHHHH--HHHhhhhccCCcEEEEeHHHHHHhhh----cccHHHHH
Confidence            4688999999999999999999999999999999999999  76654433468999999999999887    46889999


Q ss_pred             hhhhccCCcCCCCeeEEeEcCCCceeEEEEEecCcceeeecCCCCCChhhHhhHHHHHHHHHHHHHHHHHHHhhhcCccc
Q 020018          179 FRDRYMSRLDTCEKIYVPINSDGHWYMLVVDISHATATIWDSLESPSRREKMINESLAILASLDFVLRQEARALFCNQFT  258 (332)
Q Consensus       179 w~~~~~~~l~~~~~I~iPIn~~~HW~L~vVd~~~~~I~~yDSL~~~~~~~~rl~~~~~i~~~L~~~l~~e~~~~~~~~~~  258 (332)
                      |++  +.+++++++||||||.++||+|+|||+++++|++||||++.+...         .+.|..|+..+...+.+..++
T Consensus        94 w~~--~~~l~~~~~i~iPin~~~HW~l~vi~~~~~~i~~~DSl~~~~~~~---------~~~l~~~l~~e~~~k~~~~~~  162 (226)
T 1th0_A           94 WTK--GVNLFEQEIILVPIHRKVHWSLVVIDLRKKCLKYLDSMGQKGHRI---------CEILLQYLQDESKTKRNSDLN  162 (226)
T ss_dssp             GGT--TCCGGGSSEEEEEEEETTEEEEEEEETTTTEEEEECTTCCCCHHH---------HHHHHHHHHHHHHHHTSCCCC
T ss_pred             Hhh--cCCcccCCEEEEeEEeCcEEEEEEEEcCCCceEEEcCCCCCchHH---------HHHHHHHHHHHHHHhcCCCCC
Confidence            998  899999999999999999999999999999999999999987543         566888898888777777788


Q ss_pred             cccceee--cCCCCCCCCCCCChHHHHHHHhHhhccccCCCCC-CCChHHHHHHHHHHhhch
Q 020018          259 FLNFQIC--RQAGLPQQPNGFDCGYYVMKYMDSPCIVVHDSYQ-HDSDHARLLLALYLVQSP  317 (332)
Q Consensus       259 ~~~w~~~--~~~~vPqQ~Ng~DCGvfvl~~~e~l~~~~~~~~~-~d~~~~R~~la~~L~~~~  317 (332)
                      .+.|++.  ...++|||.||+|||||||+||++++.+.+..|+ .|++.+|++|+.+|+.+.
T Consensus       163 ~~~w~~~~~~~~~~PqQ~Ng~DCGvfvl~~~~~~~~~~~~~f~q~dm~~~R~~~~~ei~~~~  224 (226)
T 1th0_A          163 LLEWTHHSMKPHEIPQQLNGSDCGMFTCKYADYISRDKPITFTQHQMPLFRKKMVWEILHQQ  224 (226)
T ss_dssp             GGGCEEEECCTTTSCCCCSSSCHHHHHHHHHHHHTTTCCCCCCGGGHHHHHHHHHHHHHHTC
T ss_pred             cccceeccccCCCCCCCCCCCCHHHHHHHHHHHHhCCCCCccChhhHHHHHHHHHHHHHhCC
Confidence            8899874  3578999999999999999999999988777775 668999999999998764
>2xph_A Sentrin-specific protease 1; hydrolase, cysteine protease, thiol protease; 2.40A {Homo sapiens} PDB: 2xre_A 2iyc_A 2iyd_A 2iy1_A 2iy0_A 2ckg_A 2ckh_A 2g4d_A Back     alignment and structure
>1euv_A ULP1 protease; SUMO hydrolase, ubiquitin-like protease 1, SMT3 hydrolase desumoylating enzyme, cysteine protease; 1.60A {Saccharomyces cerevisiae} SCOP: d.3.1.7 PDB: 2hkp_A 2hl8_A 2hl9_A Back     alignment and structure
>3eay_A Sentrin-specific protease 7; ULP, SENP, SUMO, ubiquitin, crystal, alternative splicing, hydrolase, phosphoprotein, polymorphism, thiol protease; 2.40A {Homo sapiens} Back     alignment and structure
>2bkr_A Sentrin-specific protease 8; protein-binding-hydrolase complex, ubiquitin, hydrolase, Pro thiol protease, UBL conjugation pathway, ubiquitin/hydrolas complex; 1.90A {Homo sapiens} SCOP: d.3.1.7 PDB: 2bkq_A 1xt9_A Back     alignment and structure
>2oix_A Xanthomonas outer protein D; CLAN CE family 48 cysteine protease, type III secreted effec desumoylating enzyme; 1.80A {Xanthomonas euvesicatoria} PDB: 2oiv_A Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 332
d1th0a_226 d.3.1.7 (A:) Sentrin-specific protease 2, SENP2 {H 1e-20
d2iy1a1225 d.3.1.7 (A:419-643) Sentrin-specific protease 1 {H 2e-20
d1euva_221 d.3.1.7 (A:) Ulp1 protease C-terminal domain {Bake 2e-19
d2bkra1212 d.3.1.7 (A:1-212) Sentrin-specific protease 8, SEN 1e-12
>d1th0a_ d.3.1.7 (A:) Sentrin-specific protease 2, SENP2 {Human (Homo sapiens) [TaxId: 9606]} Length = 226 Back     information, alignment and structure

class: Alpha and beta proteins (a+b)
fold: Cysteine proteinases
superfamily: Cysteine proteinases
family: Adenain-like
domain: Sentrin-specific protease 2, SENP2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 86.8 bits (214), Expect = 1e-20
 Identities = 49/221 (22%), Positives = 81/221 (36%), Gaps = 20/221 (9%)

Query: 101 KREIVVDIGDNSITRSSMRTLLPGEWIDGDIITMYADYKNMKEAEKDVTSPRCWFLPTYY 160
           + EI+       ITR  ++TL    W++ ++I  Y +   + E  K    P      T++
Sbjct: 22  QDEILSSAFKLRITRGDIQTLKNYHWLNDEVINFYMNL--LVERNKKQGYPALHVFSTFF 79

Query: 161 SQAALADWSSLNFAQAAGFRDRYMSRLDTCEKIYVPINSDGHWYMLVVDISHATATIWDS 220
                      +    A  R      L   E I VPI+   HW ++V+D+        DS
Sbjct: 80  Y------PKLKSGGYQAVKRWTKGVNLFEQEIILVPIHRKVHWSLVVIDLRKKCLKYLDS 133

Query: 221 LESPSRREKMINESLAILASLDFVLRQEARALFCNQFTFLNFQI--CRQAGLPQQPNGFD 278
           +     R         I   L   L+ E++    +    L +     +   +PQQ NG D
Sbjct: 134 MGQKGHR---------ICEILLQYLQDESKTKRNSDLNLLEWTHHSMKPHEIPQQLNGSD 184

Query: 279 CGYYVMKYMDSPCIVVHDSY-QHDSDHARLLLALYLVQSPL 318
           CG +  KY D        ++ QH     R  +   ++   L
Sbjct: 185 CGMFTCKYADYISRDKPITFTQHQMPLFRKKMVWEILHQQL 225
>d2iy1a1 d.3.1.7 (A:419-643) Sentrin-specific protease 1 {Human (Homo sapiens) [TaxId: 9606]} Length = 225 Back     information, alignment and structure
>d1euva_ d.3.1.7 (A:) Ulp1 protease C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 221 Back     information, alignment and structure
>d2bkra1 d.3.1.7 (A:1-212) Sentrin-specific protease 8, SENP8 {Human (Homo sapiens) [TaxId: 9606]} Length = 212 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query332
d2iy1a1225 Sentrin-specific protease 1 {Human (Homo sapiens) 100.0
d1th0a_226 Sentrin-specific protease 2, SENP2 {Human (Homo sa 100.0
d1euva_221 Ulp1 protease C-terminal domain {Baker's yeast (Sa 100.0
d2bkra1212 Sentrin-specific protease 8, SENP8 {Human (Homo sa 100.0
d1nlna_203 Human adenovirus 2 proteinase, adenain {Mastadenov 96.42
>d2iy1a1 d.3.1.7 (A:419-643) Sentrin-specific protease 1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
class: Alpha and beta proteins (a+b)
fold: Cysteine proteinases
superfamily: Cysteine proteinases
family: Adenain-like
domain: Sentrin-specific protease 1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=2.9e-39  Score=289.21  Aligned_cols=202  Identities=21%  Similarity=0.323  Sum_probs=171.7

Q ss_pred             cCCcceEEeeCCeeeehhhhhccCCCCCcCHHHHHHHHhhhhHHhhhhcCCCCcEEEECchhHHHhhhccccchhHhhhh
Q 020018           99 HGKREIVVDIGDNSITRSSMRTLLPGEWIDGDIITMYADYKNMKEAEKDVTSPRCWFLPTYYSQAALADWSSLNFAQAAG  178 (332)
Q Consensus        99 ~~~~~vlv~~~~~~L~~~Dl~~L~~~~WLND~IIn~y~~~lnl~~~~~~~~~~~~~~~~s~f~~~l~~~~~~~~~~~v~r  178 (332)
                      +++++++++++++.|+.+|+++|.+++||||.||++|+++  +.++.......++++++|+|+..+..    .++..+.+
T Consensus        20 ~~~~~~~~~~~~~~it~~Dl~~L~~~~wLnd~iI~~y~~~--l~~~~~~~~~~~~~~~~t~~~~~~~~----~~~~~~~~   93 (225)
T d2iy1a1          20 GNQDEVLSEAFRLTITRKDIQTLNHLNWLNDEIINFYMNM--LMERSKEKGLPSVHAFNTFFFTKLKT----AGYQAVKR   93 (225)
T ss_dssp             SCTTCEEEEETTEEEEHHHHHTTSTTCCCBHHHHHHHHHH--HHHHTTSTTSCCEEECCTTHHHHHHH----SCGGGTGG
T ss_pred             CCcCceeeecCCceeeHHHHHHhcCCcchhhHHHHHHHHH--HHHHhhhhccCceEEeccHHHhhhcc----cCHHHHHH
Confidence            3467889999999999999999999999999999999999  87766555678999999999987766    46788999


Q ss_pred             hhhhccCCcCCCCeeEEeEcCCCceeEEEEEecCcceeeecCCCCCChhhHhhHHHHHHHHHHHHHHHHHHHhhhcCccc
Q 020018          179 FRDRYMSRLDTCEKIYVPINSDGHWYMLVVDISHATATIWDSLESPSRREKMINESLAILASLDFVLRQEARALFCNQFT  258 (332)
Q Consensus       179 w~~~~~~~l~~~~~I~iPIn~~~HW~L~vVd~~~~~I~~yDSL~~~~~~~~rl~~~~~i~~~L~~~l~~e~~~~~~~~~~  258 (332)
                      |.+  ..+++++++||||||.++||+|++|+++.+++++|||+++.+...         ...+..++..+...+....++
T Consensus        94 ~~~--~~~~~~~~~I~iPin~~~HW~l~vi~~~~~~i~~~DSl~~~~~~~---------~~~i~~~l~~~~~~~~~~~~~  162 (225)
T d2iy1a1          94 WTK--KVDVFSVDILLVPIHLGVHWCLAVVDFRKKNITYYDSMGGINNEA---------CRILLQYLKQESIDKKRKEFD  162 (225)
T ss_dssp             GGT--TCCGGGSSEEEEEEECSSCEEEEEEETTTTEEEEECTTCCCCHHH---------HHHHHHHHHHHHHHHHSSCCC
T ss_pred             HHh--ccccccCCEEEEEEeCCCCEEEEEEEeccceEEEEecCCCCchHH---------HHHHHHHHHHHHHHhccCccC
Confidence            998  889999999999999999999999999999999999999987765         334555555555555666677


Q ss_pred             cccceee--cCCCCCCCCCCCChHHHHHHHhHhhccccCCCCC-CCChHHHHHHHHHHhhch
Q 020018          259 FLNFQIC--RQAGLPQQPNGFDCGYYVMKYMDSPCIVVHDSYQ-HDSDHARLLLALYLVQSP  317 (332)
Q Consensus       259 ~~~w~~~--~~~~vPqQ~Ng~DCGvfvl~~~e~l~~~~~~~~~-~d~~~~R~~la~~L~~~~  317 (332)
                      ...|+..  ...++|||+||+|||+|||+||++++.+...+|+ .|++.+|++||.+|+++.
T Consensus       163 ~~~~~~~~~~~~~~pqQ~Ng~DCGvfvl~~~~~~~~~~~~~~~q~~~~~~R~~~~~~l~~~~  224 (225)
T d2iy1a1         163 TNGWQLFSKKSQEIPQQMNGSDAGMFACKYADCITKDRPINFTQQHMPYFRKRMVWEILHRK  224 (225)
T ss_dssp             CTTCEEEECCTTTSCCCCSSSTHHHHHHHHHHHHHTTCCCCCCGGGHHHHHHHHHHHHHTTC
T ss_pred             cccceecccccccCCCCCCCCChHHHHHHHHHHHhCCCCCCcCHHHHHHHHHHHHHHHHhCc
Confidence            7778653  4678999999999999999999999887766775 568999999999998764
>d1th0a_ d.3.1.7 (A:) Sentrin-specific protease 2, SENP2 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1euva_ d.3.1.7 (A:) Ulp1 protease C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d2bkra1 d.3.1.7 (A:1-212) Sentrin-specific protease 8, SENP8 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1nlna_ d.3.1.7 (A:) Human adenovirus 2 proteinase, adenain {Mastadenovirus H2 [TaxId: 10515]} Back     information, alignment and structure