Citrus Sinensis ID: 020019
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
|---|
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
No hits with e-value below 0.001 by BLAST
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 332 | ||||||
| 255548449 | 327 | conserved hypothetical protein [Ricinus | 0.984 | 1.0 | 0.758 | 1e-146 | |
| 225437569 | 327 | PREDICTED: uncharacterized protein LOC10 | 0.978 | 0.993 | 0.721 | 1e-137 | |
| 224130984 | 328 | predicted protein [Populus trichocarpa] | 0.975 | 0.987 | 0.726 | 1e-136 | |
| 357442239 | 327 | hypothetical protein MTR_1g086990 [Medic | 0.978 | 0.993 | 0.722 | 1e-136 | |
| 388504932 | 322 | unknown [Lotus japonicus] | 0.963 | 0.993 | 0.729 | 1e-134 | |
| 449469030 | 326 | PREDICTED: uncharacterized protein LOC10 | 0.975 | 0.993 | 0.699 | 1e-134 | |
| 356499903 | 324 | PREDICTED: uncharacterized protein LOC10 | 0.972 | 0.996 | 0.722 | 1e-134 | |
| 217073892 | 327 | unknown [Medicago truncatula] gi|3885090 | 0.978 | 0.993 | 0.716 | 1e-133 | |
| 356534776 | 327 | PREDICTED: uncharacterized protein LOC10 | 0.972 | 0.987 | 0.703 | 1e-130 | |
| 18398204 | 327 | calcium-dependent phosphotriesterase-lik | 0.975 | 0.990 | 0.650 | 1e-116 |
| >gi|255548449|ref|XP_002515281.1| conserved hypothetical protein [Ricinus communis] gi|223545761|gb|EEF47265.1| conserved hypothetical protein [Ricinus communis] | Back alignment and taxonomy information |
|---|
Score = 523 bits (1348), Expect = e-146, Method: Compositional matrix adjust.
Identities = 251/331 (75%), Positives = 285/331 (86%), Gaps = 4/331 (1%)
Query: 1 MALSLCSAKSLLFFFVISAIPVAYIISQERANPATHVYHYHSSSFFRECAKWDDSGRRFI 60
M LSLCS +SLLF F++SA+P+A IIS E + P+T V+HYHSS F RECAKWDD RRF+
Sbjct: 1 MPLSLCSTRSLLFLFILSALPIAIIISLELSEPSTPVFHYHSSGFLRECAKWDDLNRRFL 60
Query: 61 VSFLDGGIGQVAVPDDYPPGTVLEEVTLVKDLELTGNGSLGLVLDHPRNRLLVVAADVFG 120
VSFLDGGIG++ VP DY PGTVLEEVT+VKD +L GN S+G V+D PRNRL+VV ADV G
Sbjct: 61 VSFLDGGIGEIRVPVDYSPGTVLEEVTVVKDADLAGNSSVGFVVDRPRNRLVVVNADVIG 120
Query: 121 NKYSAVAAYDLSTWNRLFLTQLSGPSDGKSCADDVTVDAEGNAYVTDVTGSKIWKVGVKG 180
NKYSAVAAYDLSTW RLFLTQLSGPSDGK+ ADDV VDAEGNAYVTDV SKIWKVG G
Sbjct: 121 NKYSAVAAYDLSTWERLFLTQLSGPSDGKAFADDVAVDAEGNAYVTDVKASKIWKVGNDG 180
Query: 181 EFLSIISSPLFTPKEWYKNLVGLNGIVYHPDGFLIVIHTFSGNLFKIDIVDGVGEGEEIK 240
+FLS+I++PLF KEWYKNL+ LNGIVYHPDGFLIVIHTF+GNL+KID+ +G+E+K
Sbjct: 181 KFLSVITNPLFIQKEWYKNLIALNGIVYHPDGFLIVIHTFTGNLYKIDL----AKGDEVK 236
Query: 241 LIRVAGGPLSFGDGLELLSPTKLVVAGNPSARLVESSDGWETAAVVAKFSGPVHRLATAA 300
LI+V GG LSFGDGLELLSPTK+VVAGNPS RLVESSDGWETA +V KF GP HRLATAA
Sbjct: 237 LIKVEGGSLSFGDGLELLSPTKIVVAGNPSGRLVESSDGWETATLVGKFKGPAHRLATAA 296
Query: 301 TVKDGRVYLNHMLGFGYPKKKHALVEAVFSN 331
TVKDG+VYLNHM+G GYPKKKH LVEAVFS+
Sbjct: 297 TVKDGKVYLNHMIGIGYPKKKHVLVEAVFSS 327
|
Source: Ricinus communis Species: Ricinus communis Genus: Ricinus Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|225437569|ref|XP_002276779.1| PREDICTED: uncharacterized protein LOC100252201 isoform 1 [Vitis vinifera] gi|297743981|emb|CBI36951.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 493 bits (1269), Expect = e-137, Method: Compositional matrix adjust.
Identities = 238/330 (72%), Positives = 269/330 (81%), Gaps = 5/330 (1%)
Query: 1 MALSLCSAKSLLFFFVISAIPVAYIISQERANPATHVYHYHSSSFFRECAKWDDSGRRFI 60
M LCS KSL FF+ISAIPVAYIIS ERA P+THVYHYHSS + RECAKWDD RRFI
Sbjct: 1 MVSFLCSTKSLFIFFIISAIPVAYIISVERAEPSTHVYHYHSSGWLRECAKWDDLDRRFI 60
Query: 61 VSFLDGGIGQVAVPDDYPPGTVLEEVTLVKDLELTGNGSLGLVLDHPRNRLLVVAADVFG 120
VS +GG+ V VPD + PGT+LEE+ +VK+ EL GN SLG+ +D RNR+LVV ADV
Sbjct: 61 VSLFEGGVALVEVPDGHSPGTILEEIIVVKEPELAGNASLGIAVDRRRNRVLVVNADVMR 120
Query: 121 NKYSAVAAYDLSTWNRLFLTQLSGPSDGKSCADDVTVDAEGNAYVTDVTGSKIWKVGVKG 180
N+Y ++AAYD STW RLFL+QLSGP D KS ADDV VD EGNAYVTD +KIWKVGV G
Sbjct: 121 NRYGSLAAYDRSTWRRLFLSQLSGPGDEKSFADDVAVDEEGNAYVTDAKANKIWKVGVDG 180
Query: 181 EFLSIISSPLFTPKEWYKNLVGLNGIVYHPDGFLIVIHTFSGNLFKIDIVDGVGEGEEIK 240
E LSII SPLFTPKEWYK LVGLNG+VYHP+G+L+VIHTFSGNL KI+I E EE+K
Sbjct: 181 EILSIIRSPLFTPKEWYKTLVGLNGVVYHPNGYLLVIHTFSGNLLKIEI-----EKEEVK 235
Query: 241 LIRVAGGPLSFGDGLELLSPTKLVVAGNPSARLVESSDGWETAAVVAKFSGPVHRLATAA 300
L++V GG L FGDGLEL+SPTKLVVAGNPS RLVESSD WETA V AK+SGP HRLATAA
Sbjct: 236 LVKVGGGKLVFGDGLELISPTKLVVAGNPSGRLVESSDEWETATVTAKYSGPAHRLATAA 295
Query: 301 TVKDGRVYLNHMLGFGYPKKKHALVEAVFS 330
TVKDG+VYLNH+LG GYP+K HALVEAVFS
Sbjct: 296 TVKDGKVYLNHLLGMGYPRKTHALVEAVFS 325
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224130984|ref|XP_002320973.1| predicted protein [Populus trichocarpa] gi|222861746|gb|EEE99288.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 490 bits (1262), Expect = e-136, Method: Compositional matrix adjust.
Identities = 242/333 (72%), Positives = 276/333 (82%), Gaps = 9/333 (2%)
Query: 1 MALSLCSAKSLLFFFVISAIPVAYIISQERANPATHVYHYHSSSFFRECAKWDDSGRRFI 60
MA SLCS K+LLF +ISAIP+A+IIS E A P THVYHYHSS FFRE AKWDD RRF+
Sbjct: 1 MAFSLCSTKTLLFLLLISAIPIAFIISMELAKPPTHVYHYHSSGFFRESAKWDDLNRRFL 60
Query: 61 VSFLDGGIGQVAVPDDYPPG---TVLEEVTLVKDLELTGNGSLGLVLDHPRNRLLVVAAD 117
VSF++GGIG++AVP+D+ VL+EVT+VKD +LTGN SLG+V+D PRNRLLV +D
Sbjct: 61 VSFMEGGIGEIAVPEDHGSSLEEAVLKEVTVVKDPDLTGNSSLGIVVDRPRNRLLVAISD 120
Query: 118 VFGNKYSAVAAYDLSTWNRLFLTQLSGPSDGKSCADDVTVDAEGNAYVTDVTGSKIWKVG 177
V GN Y+A+AAYDLSTW+RLFLT+L + KS ADDV VDAEGNAYVTD +KIWKVG
Sbjct: 121 VLGNNYNALAAYDLSTWDRLFLTKLD---NEKSFADDVAVDAEGNAYVTDAKSNKIWKVG 177
Query: 178 VKGEFLSIISSPLFTPKEWYKNLVGLNGIVYHPDGFLIVIHTFSGNLFKIDIVDGVGEGE 237
G+F+S I +P F KEWYKNL+GLNGIVYHPDGFLIVIHTFSG L+KIDI E
Sbjct: 178 ADGKFVSFIRNPHFVAKEWYKNLIGLNGIVYHPDGFLIVIHTFSGMLYKIDIAK---EDH 234
Query: 238 EIKLIRVAGGPLSFGDGLELLSPTKLVVAGNPSARLVESSDGWETAAVVAKFSGPVHRLA 297
E+KLI+VAGG L+FGDGLELLSPTKLVVAGNPS RLVESSD WETA+VVAKF GP HRLA
Sbjct: 235 EVKLIKVAGGSLAFGDGLELLSPTKLVVAGNPSGRLVESSDRWETASVVAKFKGPAHRLA 294
Query: 298 TAATVKDGRVYLNHMLGFGYPKKKHALVEAVFS 330
TAATVKDGRVYLNH+LG GYPK+KHALVEAVFS
Sbjct: 295 TAATVKDGRVYLNHLLGMGYPKRKHALVEAVFS 327
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Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|357442239|ref|XP_003591397.1| hypothetical protein MTR_1g086990 [Medicago truncatula] gi|355480445|gb|AES61648.1| hypothetical protein MTR_1g086990 [Medicago truncatula] | Back alignment and taxonomy information |
|---|
Score = 489 bits (1259), Expect = e-136, Method: Compositional matrix adjust.
Identities = 239/331 (72%), Positives = 271/331 (81%), Gaps = 6/331 (1%)
Query: 1 MALS-LCSAKSLLFFFVISAIPVAYIISQERANPATHVYHYHSSSFFRECAKWDDSGRRF 59
MA S LCS K L F+++AIP+ IIS ER P+THVYHYHS FFRECAKWD RF
Sbjct: 1 MACSCLCSPKFLAILFLLTAIPIGIIISLERTQPSTHVYHYHSKGFFRECAKWDSDNHRF 60
Query: 60 IVSFLDGGIGQVAVPD-DYPPGTVLEEVTLVKDLELTGNGSLGLVLDHPRNRLLVVAADV 118
I SF +GGIGQ++VP+ + GTV EE T++K+ EL GN SLG+ +D RNR+LVV ADV
Sbjct: 61 INSFFEGGIGQISVPEKESEAGTVFEEATVLKETELAGNASLGMTIDRSRNRILVVNADV 120
Query: 119 FGNKYSAVAAYDLSTWNRLFLTQLSGPSDGKSCADDVTVDAEGNAYVTDVTGSKIWKVGV 178
GN+YSA+ AYDLSTW RLFLTQLSGPSD K+ ADDV VDAEGNAYVTDV SKIWKVGV
Sbjct: 121 RGNRYSALVAYDLSTWKRLFLTQLSGPSDEKALADDVAVDAEGNAYVTDVKASKIWKVGV 180
Query: 179 KGEFLSIISSPLFTPKEWYKNLVGLNGIVYHPDGFLIVIHTFSGNLFKIDIVDGVGEGEE 238
G +SII +PLFTPKEW+K LVGLNGIVYHPDGFLIVIHTFSGNLFKID+ +GEE
Sbjct: 181 GGNLISIIRNPLFTPKEWHKTLVGLNGIVYHPDGFLIVIHTFSGNLFKIDLT----KGEE 236
Query: 239 IKLIRVAGGPLSFGDGLELLSPTKLVVAGNPSARLVESSDGWETAAVVAKFSGPVHRLAT 298
+K+I V GGPL FGDGLELLSP K+VVAGNPS RLVES DGW TA+VVAKFSGP HRLAT
Sbjct: 237 VKIINVVGGPLYFGDGLELLSPNKVVVAGNPSGRLVESLDGWNTASVVAKFSGPKHRLAT 296
Query: 299 AATVKDGRVYLNHMLGFGYPKKKHALVEAVF 329
+ATVKDG+VYLNHM+G GYPKKKHA+VEAVF
Sbjct: 297 SATVKDGKVYLNHMVGIGYPKKKHAIVEAVF 327
|
Source: Medicago truncatula Species: Medicago truncatula Genus: Medicago Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|388504932|gb|AFK40532.1| unknown [Lotus japonicus] | Back alignment and taxonomy information |
|---|
Score = 484 bits (1245), Expect = e-134, Method: Compositional matrix adjust.
Identities = 240/329 (72%), Positives = 271/329 (82%), Gaps = 9/329 (2%)
Query: 3 LSLCSAKSLLFFFVISAIPVAYIISQERANPATHVYHYHSSSFFRECAKWDDSGRRFIVS 62
++L SAKSL F ++ +IPV IIS ERA PATHVYHYHS+ FFRECAKWD RFIVS
Sbjct: 1 MALFSAKSLTFLVLLISIPVGIIISLERAQPATHVYHYHSTGFFRECAKWDSDNNRFIVS 60
Query: 63 FLDGGIGQVAVPDDYPPG--TVLEEVTLVKDLELTGNGSLGLVLDHPRNRLLVVAADVFG 120
+ +GG+GQ+ V P G VLEEVT+V++ EL GN SLG+V+D RNR+LVV ADV G
Sbjct: 61 YFEGGVGQIPV---VPAGGEAVLEEVTVVREPELAGNASLGMVIDRSRNRILVVNADVLG 117
Query: 121 NKYSAVAAYDLSTWNRLFLTQLSGPSDGKSCADDVTVDAEGNAYVTDVTGSKIWKVGVKG 180
N+Y A+AAYDLSTWNRLFLT L+ D KS ADDV VDAEGNAYVTDV GSKIWKVGV G
Sbjct: 118 NRYGALAAYDLSTWNRLFLTPLTRTGDEKSFADDVAVDAEGNAYVTDVKGSKIWKVGVDG 177
Query: 181 EFLSIISSPLFTPKEWYKNLVGLNGIVYHPDGFLIVIHTFSGNLFKIDIVDGVGEGEEIK 240
E LSII +PLFTPKEWYK GLNGIVYHPDGFLIVIHTFSGNLFKID+ +GEE+K
Sbjct: 178 ELLSIIRNPLFTPKEWYKTFFGLNGIVYHPDGFLIVIHTFSGNLFKIDL----AKGEEVK 233
Query: 241 LIRVAGGPLSFGDGLELLSPTKLVVAGNPSARLVESSDGWETAAVVAKFSGPVHRLATAA 300
+I+V GGPL FGDGLELLSP KLVVAG+PS RLVES+DGW+TA+VVA FSGP HRLATAA
Sbjct: 234 IIKVEGGPLYFGDGLELLSPNKLVVAGSPSGRLVESADGWDTASVVATFSGPKHRLATAA 293
Query: 301 TVKDGRVYLNHMLGFGYPKKKHALVEAVF 329
TVKDG+VYLNHMLG GYPKKKHA+VEAVF
Sbjct: 294 TVKDGKVYLNHMLGMGYPKKKHAIVEAVF 322
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Source: Lotus japonicus Species: Lotus japonicus Genus: Lotus Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449469030|ref|XP_004152224.1| PREDICTED: uncharacterized protein LOC101220240 [Cucumis sativus] gi|449484215|ref|XP_004156819.1| PREDICTED: uncharacterized protein LOC101228903 [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 483 bits (1244), Expect = e-134, Method: Compositional matrix adjust.
Identities = 230/329 (69%), Positives = 277/329 (84%), Gaps = 5/329 (1%)
Query: 3 LSLCSAKSLLFFFVISAIPVAYIISQERANPATHVYHYHSSSFFRECAKWDDSGRRFIVS 62
++LCS + L F++SAIP+A++IS E ANP +HVY+YHS+ +FRECAKWDD GRRF+V
Sbjct: 1 MALCSTRFLFILFILSAIPIAFLISLELANPPSHVYYYHSTGYFRECAKWDDLGRRFLVG 60
Query: 63 FLDGG-IGQVAVPDDYPPGTVLEEVTLVKDLELTGNGSLGLVLDHPRNRLLVVAADVFGN 121
F+ GG +GQV+VPDDY P T+LEEV ++KD +L GN SLG+V+D PRNRLLVV AD+ N
Sbjct: 61 FMSGGGVGQVSVPDDYTPETILEEVPVIKDADLQGNASLGIVVDRPRNRLLVVFADLLAN 120
Query: 122 KYSAVAAYDLSTWNRLFLTQLSGPSDGKSCADDVTVDAEGNAYVTDVTGSKIWKVGVKGE 181
KYS +AAYDLS+W R FLT LSGP+D KS ADDV VD+EGNAYVTD +KIWKVGV G+
Sbjct: 121 KYSGLAAYDLSSWKRQFLTHLSGPNDEKSFADDVAVDSEGNAYVTDAKNNKIWKVGVDGK 180
Query: 182 FLSIISSPLFTPKEWYKNLVGLNGIVYHPDGFLIVIHTFSGNLFKIDIVDGVGEGEEIKL 241
FLS I+SPLF K+WYKNLVGLNGIVYHPDG+L+VIHTFSG+L+KID+V +GEE+KL
Sbjct: 181 FLSTINSPLFISKQWYKNLVGLNGIVYHPDGYLLVIHTFSGSLYKIDLV----KGEEVKL 236
Query: 242 IRVAGGPLSFGDGLELLSPTKLVVAGNPSARLVESSDGWETAAVVAKFSGPVHRLATAAT 301
I V GG L GDGLELLSPTKLVVAGNP+ RLVES+DGWETA++V+ SG HRLAT+AT
Sbjct: 237 INVTGGSLMLGDGLELLSPTKLVVAGNPAGRLVESTDGWETASLVSTCSGLKHRLATSAT 296
Query: 302 VKDGRVYLNHMLGFGYPKKKHALVEAVFS 330
VK+GRVYL+HM+G GYPKKKHALVEAVFS
Sbjct: 297 VKNGRVYLSHMIGIGYPKKKHALVEAVFS 325
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356499903|ref|XP_003518775.1| PREDICTED: uncharacterized protein LOC100805536 [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 483 bits (1242), Expect = e-134, Method: Compositional matrix adjust.
Identities = 237/328 (72%), Positives = 273/328 (83%), Gaps = 5/328 (1%)
Query: 3 LSLCSAKSLLFFFVISAIPVAYIISQERANPATHVYHYHSSSFFRECAKWDDSGRRFIVS 62
++ CS K L ++SAIP+ I++ ERA PATHVYHYHS+ +FRECAKWD RRFIVS
Sbjct: 1 MAFCSPKFLSLLLLLSAIPIGIIVTLERAKPATHVYHYHSNGWFRECAKWDSHNRRFIVS 60
Query: 63 FLDGGIGQVAVPD-DYPPGTVLEEVTLVKDLELTGNGSLGLVLDHPRNRLLVVAADVFGN 121
F +GG+GQV +P+ DY LEEVT+VK+ L GN SLG+ +D PRNR+LVV ADV GN
Sbjct: 61 FFEGGLGQVLLPEKDYESSPPLEEVTVVKETHLAGNASLGIAIDAPRNRVLVVNADVIGN 120
Query: 122 KYSAVAAYDLSTWNRLFLTQLSGPSDGKSCADDVTVDAEGNAYVTDVTGSKIWKVGVKGE 181
+Y A+AAYDLSTWNRLFLTQLS PSD KS ADDV VDAEGNAYVTD G+KIWKVGV+G+
Sbjct: 121 RYGALAAYDLSTWNRLFLTQLSAPSDEKSFADDVAVDAEGNAYVTDAKGNKIWKVGVEGK 180
Query: 182 FLSIISSPLFTPKEWYKNLVGLNGIVYHPDGFLIVIHTFSGNLFKIDIVDGVGEGEEIKL 241
+SII +PLFT KEWYKNLVGLNGIVYHPDGFLIVIHTFSGNLFKID+ +GEE+K+
Sbjct: 181 LISIIRNPLFTSKEWYKNLVGLNGIVYHPDGFLIVIHTFSGNLFKIDLT----KGEEVKI 236
Query: 242 IRVAGGPLSFGDGLELLSPTKLVVAGNPSARLVESSDGWETAAVVAKFSGPVHRLATAAT 301
I++ G LSFGDGLELLSPTKLVVAGNPS RLVES+DGW TA+VV FSGP HRLATAAT
Sbjct: 237 IKLKEGTLSFGDGLELLSPTKLVVAGNPSGRLVESTDGWNTASVVGTFSGPKHRLATAAT 296
Query: 302 VKDGRVYLNHMLGFGYPKKKHALVEAVF 329
VKDG+VYLNHM+G GYPKKKHA+VEAVF
Sbjct: 297 VKDGKVYLNHMVGIGYPKKKHAIVEAVF 324
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|217073892|gb|ACJ85306.1| unknown [Medicago truncatula] gi|388509062|gb|AFK42597.1| unknown [Medicago truncatula] | Back alignment and taxonomy information |
|---|
Score = 480 bits (1236), Expect = e-133, Method: Compositional matrix adjust.
Identities = 237/331 (71%), Positives = 269/331 (81%), Gaps = 6/331 (1%)
Query: 1 MALS-LCSAKSLLFFFVISAIPVAYIISQERANPATHVYHYHSSSFFRECAKWDDSGRRF 59
MA S L S K L F+++AIP+ IIS ER P+THVYHYHS FFRECAKWD RF
Sbjct: 1 MACSCLRSPKFLAILFLLTAIPIGIIISLERTQPSTHVYHYHSKGFFRECAKWDSDNHRF 60
Query: 60 IVSFLDGGIGQVAVPD-DYPPGTVLEEVTLVKDLELTGNGSLGLVLDHPRNRLLVVAADV 118
I SF +GGIGQ++VP+ + GTV EE T++K+ EL GN SLG+ +D RNR+LVV ADV
Sbjct: 61 INSFFEGGIGQISVPEKESEAGTVFEEATVLKETELAGNASLGMTIDRSRNRILVVNADV 120
Query: 119 FGNKYSAVAAYDLSTWNRLFLTQLSGPSDGKSCADDVTVDAEGNAYVTDVTGSKIWKVGV 178
GN+YSA+ AYDLSTW RLFLTQLSGPSD K+ ADDV VDAEGNAYVTDV SKIWKVGV
Sbjct: 121 RGNRYSALVAYDLSTWKRLFLTQLSGPSDEKALADDVAVDAEGNAYVTDVKASKIWKVGV 180
Query: 179 KGEFLSIISSPLFTPKEWYKNLVGLNGIVYHPDGFLIVIHTFSGNLFKIDIVDGVGEGEE 238
G +SII +PLFTPKEW+K LVGLNGIVYHPDGFLIVIHTFSGNLFKID+ +GEE
Sbjct: 181 GGNLISIIRNPLFTPKEWHKTLVGLNGIVYHPDGFLIVIHTFSGNLFKIDLT----KGEE 236
Query: 239 IKLIRVAGGPLSFGDGLELLSPTKLVVAGNPSARLVESSDGWETAAVVAKFSGPVHRLAT 298
+K+I V GGPL FGDGLELLSP K+VVAGNPS RLVES DGW TA+VVAKFSGP HRLAT
Sbjct: 237 VKIINVVGGPLYFGDGLELLSPNKVVVAGNPSGRLVESLDGWNTASVVAKFSGPKHRLAT 296
Query: 299 AATVKDGRVYLNHMLGFGYPKKKHALVEAVF 329
+ATVKDG+VYLNHM+G GYPKKK A+VEAVF
Sbjct: 297 SATVKDGKVYLNHMVGIGYPKKKPAIVEAVF 327
|
Source: Medicago truncatula Species: Medicago truncatula Genus: Medicago Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356534776|ref|XP_003535928.1| PREDICTED: uncharacterized protein LOC100809270 [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 470 bits (1209), Expect = e-130, Method: Compositional matrix adjust.
Identities = 233/331 (70%), Positives = 272/331 (82%), Gaps = 8/331 (2%)
Query: 3 LSLCSAKSLLFFFVISAIPVAYIISQERANPATHVYHYHSSSFFRECAKWDDSGRRFIVS 62
++LCS + L ++SAIP+ I++ ERA PATHVYHYHSS +FRECAKWD RRFIVS
Sbjct: 1 MALCSPRFLTLLLLLSAIPIGIIVTLERAQPATHVYHYHSSGWFRECAKWDSHHRRFIVS 60
Query: 63 FLDGGIGQVAVPDDYPPGTVLEE----VTLVKDLELTGNGSLGLVLDHPRNRLLVVAADV 118
F +GG+GQV +P+ + VT+V+D L GN SLG+ +D PRNR+LVV ADV
Sbjct: 61 FFEGGLGQVKLPEKDSESSSSSPPLEEVTVVRDAHLAGNASLGIAIDPPRNRVLVVNADV 120
Query: 119 FGNKYSAVAAYDLSTWNRLFLTQLSGPSDGKSCADDVTVDAEGNAYVTDVTGSKIWKVGV 178
GN+Y A+AAYDLSTWNRLFLTQLS PSD KS ADDV VDAEGNAYVTD+ G+KIWKVGV
Sbjct: 121 IGNRYGALAAYDLSTWNRLFLTQLSSPSDEKSFADDVAVDAEGNAYVTDIKGNKIWKVGV 180
Query: 179 KGEFLSIISSPLFTPKEWYKNLVGLNGIVYHPDGFLIVIHTFSGNLFKIDIVDGVGEGEE 238
+G+ +SII +PLF+ KEWYKNLVGLNGIVYHPDGFLIVIHTFSGNLFKID+ +GEE
Sbjct: 181 EGKLISIIRNPLFSAKEWYKNLVGLNGIVYHPDGFLIVIHTFSGNLFKIDLT----KGEE 236
Query: 239 IKLIRVAGGPLSFGDGLELLSPTKLVVAGNPSARLVESSDGWETAAVVAKFSGPVHRLAT 298
+K+I+V GG LSFGDGLELLSPTKLVVAGNPS RLVESSDGW TA+VV FSGP HRLA+
Sbjct: 237 VKIIKVKGGTLSFGDGLELLSPTKLVVAGNPSGRLVESSDGWNTASVVGTFSGPKHRLAS 296
Query: 299 AATVKDGRVYLNHMLGFGYPKKKHALVEAVF 329
AATVK+G+VYLNHM+G GYPKKKHA+VEAVF
Sbjct: 297 AATVKEGKVYLNHMVGIGYPKKKHAIVEAVF 327
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|18398204|ref|NP_565392.1| calcium-dependent phosphotriesterase-like protein [Arabidopsis thaliana] gi|4581119|gb|AAD24609.1| expressed protein [Arabidopsis thaliana] gi|21537036|gb|AAM61377.1| unknown [Arabidopsis thaliana] gi|26451541|dbj|BAC42868.1| unknown protein [Arabidopsis thaliana] gi|28973387|gb|AAO64018.1| unknown protein [Arabidopsis thaliana] gi|330251441|gb|AEC06535.1| calcium-dependent phosphotriesterase-like protein [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
Score = 424 bits (1089), Expect = e-116, Method: Compositional matrix adjust.
Identities = 216/332 (65%), Positives = 260/332 (78%), Gaps = 8/332 (2%)
Query: 1 MALSLCSAK-SLLFFFVISAIPVAYIISQERANPATHVYHYHSSSFFRECAKWDDSGRRF 59
M+ S CS + + F VISA+P+AY+IS E A P+THV+ Y SS FFRECAKWDD GRRF
Sbjct: 1 MSPSFCSGRCTAALFLVISAVPIAYLISLELAVPSTHVFSYQSSGFFRECAKWDDVGRRF 60
Query: 60 IVSFLDGG-IGQVAVPDDYPPGTVLEEVTLVKDLELTGNGSLGLVLDHPRNRLLVVAADV 118
+VSF+DGG +G++ VP D VLEEVTLVKD++L GN SLG+ +DH RNRLLV AD+
Sbjct: 61 LVSFMDGGGVGEI-VPKD--SDDVLEEVTLVKDVDLAGNASLGIAIDHVRNRLLVAVADL 117
Query: 119 FGNKYSAVAAYDLSTWNRLFLTQLSGPSDGKSCADDVTVDAEGNAYVTDVTGSKIWKVGV 178
GN+YSA+AAYDLSTW RLFL +LSG S K+ ADDV VD +GNAYVTD SKIWKV V
Sbjct: 118 LGNRYSALAAYDLSTWRRLFLAELSGQSKEKTFADDVAVDEQGNAYVTDAKASKIWKVDV 177
Query: 179 KGEFLSIISSPLFTPKEWYKNLVGLNGIVYHPDGFLIVIHTFSGNLFKIDIVDGVGEGEE 238
G+ ++ I+SPLFTP WY NLV LNGIVYHPDGFLIVIHTFSG L+KID+ +G +
Sbjct: 178 NGKLVNTITSPLFTPPGWYNNLVALNGIVYHPDGFLIVIHTFSGYLYKIDLTNG-DVSNQ 236
Query: 239 IKLIRVAGGPLSFGDGLELLSPTKLVVAGNPSARLVESSDGWETAAVVAKF-SGPVHRLA 297
+ +I V+GG L FGDGLELLSPTK+VVAG+ S +LVESSDGW TA+V F SG VHR+
Sbjct: 237 VSVIDVSGGTLRFGDGLELLSPTKIVVAGSSSTKLVESSDGWRTASVTGWFSSGMVHRVV 296
Query: 298 TAATVKDGRVYLNHMLGFGYPKKKHALVEAVF 329
++ATVK+GRVYLNH++GFG KKKH LVEAVF
Sbjct: 297 SSATVKEGRVYLNHIVGFG-SKKKHVLVEAVF 327
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Source: Arabidopsis thaliana Species: Arabidopsis thaliana Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 332 | ||||||
| TAIR|locus:2059934 | 327 | AT2G16760 "AT2G16760" [Arabido | 0.975 | 0.990 | 0.650 | 4.2e-111 | |
| TAIR|locus:2065170 | 330 | AT2G47370 "AT2G47370" [Arabido | 0.978 | 0.984 | 0.619 | 1.6e-104 | |
| TAIR|locus:2148820 | 174 | AT5G28660 "AT5G28660" [Arabido | 0.370 | 0.706 | 0.551 | 1e-36 | |
| TAIR|locus:2038751 | 387 | AT2G01410 "AT2G01410" [Arabido | 0.861 | 0.739 | 0.308 | 2.9e-23 | |
| UNIPROTKB|Q9RYV4 | 462 | DR_A0202 "Superoxide dismutase | 0.545 | 0.391 | 0.298 | 0.00021 |
| TAIR|locus:2059934 AT2G16760 "AT2G16760" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1097 (391.2 bits), Expect = 4.2e-111, P = 4.2e-111
Identities = 216/332 (65%), Positives = 260/332 (78%)
Query: 1 MALSLCSAK-SLLFFFVISAIPVAYIISQERANPATHVYHYHSSSFFRECAKWDDSGRRF 59
M+ S CS + + F VISA+P+AY+IS E A P+THV+ Y SS FFRECAKWDD GRRF
Sbjct: 1 MSPSFCSGRCTAALFLVISAVPIAYLISLELAVPSTHVFSYQSSGFFRECAKWDDVGRRF 60
Query: 60 IVSFLDGG-IGQVAVPDDYPPGTVLEEVTLVKDLELTGNGSLGLVLDHPRNRLLVVAADV 118
+VSF+DGG +G++ VP D VLEEVTLVKD++L GN SLG+ +DH RNRLLV AD+
Sbjct: 61 LVSFMDGGGVGEI-VPKD--SDDVLEEVTLVKDVDLAGNASLGIAIDHVRNRLLVAVADL 117
Query: 119 FGNKYSAVAAYDLSTWNRLFLTQLSGPSDGKSCADDVTVDAEGNAYVTDVTGSKIWKVGV 178
GN+YSA+AAYDLSTW RLFL +LSG S K+ ADDV VD +GNAYVTD SKIWKV V
Sbjct: 118 LGNRYSALAAYDLSTWRRLFLAELSGQSKEKTFADDVAVDEQGNAYVTDAKASKIWKVDV 177
Query: 179 KGEFLSIISSPLFTPKEWYKNLVGLNGIVYHPDGFLIVIHTFSGNLFKIDIVDGVGEGEE 238
G+ ++ I+SPLFTP WY NLV LNGIVYHPDGFLIVIHTFSG L+KID+ +G +
Sbjct: 178 NGKLVNTITSPLFTPPGWYNNLVALNGIVYHPDGFLIVIHTFSGYLYKIDLTNG-DVSNQ 236
Query: 239 IKLIRVAGGPLSFGDGLELLSPTKLVVAGNPSARLVESSDGWETAAVVAKFS-GPVHRLA 297
+ +I V+GG L FGDGLELLSPTK+VVAG+ S +LVESSDGW TA+V FS G VHR+
Sbjct: 237 VSVIDVSGGTLRFGDGLELLSPTKIVVAGSSSTKLVESSDGWRTASVTGWFSSGMVHRVV 296
Query: 298 TAATVKDGRVYLNHMLGFGYPKKKHALVEAVF 329
++ATVK+GRVYLNH++GFG KKKH LVEAVF
Sbjct: 297 SSATVKEGRVYLNHIVGFG-SKKKHVLVEAVF 327
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| TAIR|locus:2065170 AT2G47370 "AT2G47370" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1035 (369.4 bits), Expect = 1.6e-104, P = 1.6e-104
Identities = 207/334 (61%), Positives = 252/334 (75%)
Query: 1 MALSLCSAK-SL-LFFFVISAIPVAYIISQERANPATHVYHYHSSSFFRECAKWDDSGRR 58
M+ S CS K S+ LFFF++SA+P+AYIIS E+A P+THV YHSS F RECAKWDD GRR
Sbjct: 1 MSPSCCSGKYSVALFFFILSAVPIAYIISSEKAVPSTHVISYHSSGFLRECAKWDDVGRR 60
Query: 59 FIVSFLDGG--IGQVAVPDDYPPGTVLEEVTLVKDLELTGNGSLGLVLDHPRNRLLVVAA 116
F+VS++DGG IG++ D VL+EVTLVKD++L GN S G V+D RNRLL+
Sbjct: 61 FLVSYMDGGGGIGELVPTKD--SDDVLKEVTLVKDVDLAGNSSNGFVIDRHRNRLLLAVG 118
Query: 117 DVFGNKYSAVAAYDLSTWNRLFLTQLSGPSDGKSCADDVTVDAEGNAYVTDVTGSKIWKV 176
D+ GN+YSA+ AYDLSTW RLFLT LS S + ADDV VD +GNAYV+D G KIW V
Sbjct: 119 DLLGNRYSALVAYDLSTWRRLFLTVLSSHSKEITYADDVAVDTQGNAYVSDAKGGKIWVV 178
Query: 177 GVKGEFLSIISSPLFTPKEWYKNLVGLNGIVYHPDGFLIVIHTFSGNLFKIDIVDGVGEG 236
V G+ + I SPLFT WY N V LNGIVYHP+GFLIVIHTFSG L+KID+ +G
Sbjct: 179 DVNGKLVYTIRSPLFTTPGWYNNFVSLNGIVYHPEGFLIVIHTFSGFLYKIDVTNG-DVS 237
Query: 237 EEIKLIRVAGGPLSFGDGLELLSPTKLVVAGNPSARLVESSDGWETAAVVAKFS-GPVHR 295
++ +I V+GG L FGDGLE LSPTK+VVAG+PS++LVESSDGW TA+V FS G VHR
Sbjct: 238 SKVTVIDVSGGSLRFGDGLEFLSPTKIVVAGSPSSKLVESSDGWRTASVTGWFSSGMVHR 297
Query: 296 LATAATVKDGRVYLNHMLGFGYPKKKHALVEAVF 329
L ++ATVK+GRVYLNH++GFG KK+H LVEAVF
Sbjct: 298 LVSSATVKEGRVYLNHIVGFG-SKKRHILVEAVF 330
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| TAIR|locus:2148820 AT5G28660 "AT5G28660" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 327 (120.2 bits), Expect = 1.0e-36, Sum P(2) = 1.0e-36
Identities = 70/127 (55%), Positives = 84/127 (66%)
Query: 66 GGIGQVAVPDDYPPGTVLEEVTLVKDLELTGNGSLGLVLDHPRNRLLVVAADVFGNKYSA 125
GGIG++ D VLEEVTLV D++L N S G V+D RNRLL+ D+ GN+YSA
Sbjct: 5 GGIGELVPTKD--SDNVLEEVTLVNDVDLADNSSNGFVIDRHRNRLLLAVGDLLGNRYSA 62
Query: 126 VAAYDLSTWNRLFLTQLSGPSDGKSCADDVTVDAEGNAYVTDVTGSKIWKVGVKGEFLSI 185
+ AYDLSTW LFLT LS S + ADDV VD +GNAYV+D G KIW V V G+ +
Sbjct: 63 LVAYDLSTWRHLFLTVLS--SHKITYADDVAVDTQGNAYVSDAKGGKIWIVDVNGKLVYT 120
Query: 186 ISSPLFT 192
I SPLFT
Sbjct: 121 IRSPLFT 127
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| TAIR|locus:2038751 AT2G01410 "AT2G01410" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 268 (99.4 bits), Expect = 2.9e-23, P = 2.9e-23
Identities = 98/318 (30%), Positives = 149/318 (46%)
Query: 9 KSLLFFFVISAIPVAYIISQERANPATHVYHYHSSSFFRECAKWDDSGRRFIVSFLDGGI 68
+S F ++ A+ ++ A+ HV ++ S + E WD + F+V G +
Sbjct: 14 RSFFVFPILFAVLFLGLLIPSSADNR-HVINFRSPGLYPEGLTWDPRDQHFLV----GSL 68
Query: 69 GQVAVPDDYPPGTVLEEVTLVKDLELTGNGS-LGLVLDHPRNRLLVVAADVFG-NKYSAV 126
+ G V+E TL+ DL+L N + LGL +D RLL + +SA+
Sbjct: 69 HSRTIHSVSDAG-VIE--TLISDLDLPENSTILGLAVDSTNRRLLACIQSLPPLPPFSAL 125
Query: 127 AAYDL-STWNRLFLTQL-SGPSD----GKSCADDVTVDAEGNAYVTDVTGSKIWKVGVKG 180
A+YDL S R+FL+ L S P D + A+DV VD +GNAYVT+ + IWKV G
Sbjct: 126 ASYDLRSGGRRVFLSPLPSLPGDDEDIARDVANDVAVDFKGNAYVTNSAKNFIWKVDRDG 185
Query: 181 EFLSIIS-SPLFTPKEWYKNL------VGLNGIVYHPDGFLIVIHTFSGNLFKIDIVDGV 233
SI S SPLF + + GLNGIVY G+L+V+ + +G +FK+D G
Sbjct: 186 A-ASIFSKSPLFNSQPVAADADASFRDCGLNGIVYISKGYLLVVQSNTGKVFKVDEDSG- 243
Query: 234 GEGEEIKLIRVAGGPLSFGDGL-ELLSPTKLVVAGNPSARLVESSDGWETAAVVAKFSGP 292
+L+ + G L DG+ ++V L++S D W V +
Sbjct: 244 ----NARLV-LLNGDLIAADGMTRRRRDGTVMVVSQKKLWLLKSQDSWSEGVVYDEIDLD 298
Query: 293 VHRLATAATVKD-GRVYL 309
+ TA TV R+Y+
Sbjct: 299 IEGFPTAVTVAGRDRIYV 316
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| UNIPROTKB|Q9RYV4 DR_A0202 "Superoxide dismutase [Cu-Zn]" [Deinococcus radiodurans R1 (taxid:243230)] | Back alignment and assigned GO terms |
|---|
Score = 120 (47.3 bits), Expect = 0.00021, P = 0.00021
Identities = 62/208 (29%), Positives = 103/208 (49%)
Query: 99 SLGLVLDHPRNRLLVVAADVFGNKYSAVAAYDLSTWNRLFLTQLSGPSDGKSCADDVTVD 158
+LGL +D P+ RL + G V+ + T + + L L P + +D+ +
Sbjct: 245 ALGLKVD-PQGRLWIA-----GGAQGTVS---ILTPDGMTLAVLETPKSPRPYINDLVLA 295
Query: 159 AEGNAYVTDVTGSKIWKVGVKGEFLSIISSPLFTPKEWYKNLVGLNGIVYHPDG-FLIVI 217
+GN YVTD + I++V K L+ TP + Y V LNGI PDG +L+ +
Sbjct: 296 PDGNFYVTDSSRPVIFRVD-KALKLTAWLDLAGTPIK-YGPGVNLNGIAATPDGKYLLAV 353
Query: 218 HTFSGNLFKIDIVDGVGEGEEIKLIRVAGGPLSFGDGLELLSPTKLVVAGNPS---ARLV 274
+G L++ID+ + + +K +V G ++ GDGL LL L VA N A++
Sbjct: 354 QLNTGELWRIDL-----KTKAVK--KVMDGLVN-GDGL-LLDGRTLYVARNKDQVVAKVS 404
Query: 275 ESSDGWETAAVVAKFSGPVHRLATAATV 302
S+D + + +VA+ P++ L AT+
Sbjct: 405 LSAD-YGSGQLVAQ--EPLNGLRFPATL 429
Parameters:
V=100
filter=SEG
E=0.001
ctxfactor=1.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM62 0.320 0.138 0.415 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 332 332 0.00090 116 3 11 22 0.40 34
33 0.45 37
Statistics:
Database: /share/blast/go-seqdb.fasta
Title: go_20130330-seqdb.fasta
Posted: 5:47:42 AM PDT Apr 1, 2013
Created: 5:47:42 AM PDT Apr 1, 2013
Format: XDF-1
# of letters in database: 169,044,731
# of sequences in database: 368,745
# of database sequences satisfying E: 5
No. of states in DFA: 616 (65 KB)
Total size of DFA: 230 KB (2125 KB)
Time to generate neighborhood: 0.00u 0.00s 0.00t Elapsed: 00:00:00
No. of threads or processors used: 24
Search cpu time: 25.68u 0.12s 25.80t Elapsed: 00:00:01
Total cpu time: 25.68u 0.12s 25.80t Elapsed: 00:00:01
Start: Mon May 20 22:36:51 2013 End: Mon May 20 22:36:52 2013
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Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
No confident hit for EC number transfering in SWISSPROT detected by BLAST
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
No EC number assignment, probably not an enzyme!
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
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 | GSVIVG00028113001 | SubName- Full=Chromosome chr7 scaffold_42, whole genome shotgun sequence; (327 aa) | |||||||||
(Vitis vinifera) | |||||||||||
Predicted Functional Partners: | |||||||||||
| Sorry, there are no predicted associations at the current settings. | |||||||||||
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 332 | |||
| PF08450 | 246 | SGL: SMP-30/Gluconolaconase/LRE-like region; Inter | 99.97 | |
| COG3386 | 307 | Gluconolactonase [Carbohydrate transport and metab | 99.95 | |
| PLN02919 | 1057 | haloacid dehalogenase-like hydrolase family protei | 99.84 | |
| COG4257 | 353 | Vgb Streptogramin lyase [Defense mechanisms] | 99.8 | |
| PLN02919 | 1057 | haloacid dehalogenase-like hydrolase family protei | 99.75 | |
| PF08450 | 246 | SGL: SMP-30/Gluconolaconase/LRE-like region; Inter | 99.72 | |
| KOG1520 | 376 | consensus Predicted alkaloid synthase/Surface muci | 99.71 | |
| PF03022 | 287 | MRJP: Major royal jelly protein; InterPro: IPR0035 | 99.65 | |
| PF10282 | 345 | Lactonase: Lactonase, 7-bladed beta-propeller; Int | 99.61 | |
| KOG4499 | 310 | consensus Ca2+-binding protein Regucalcin/SMP30 [I | 99.6 | |
| COG4257 | 353 | Vgb Streptogramin lyase [Defense mechanisms] | 99.6 | |
| PF10282 | 345 | Lactonase: Lactonase, 7-bladed beta-propeller; Int | 99.6 | |
| PRK11028 | 330 | 6-phosphogluconolactonase; Provisional | 99.57 | |
| PRK11028 | 330 | 6-phosphogluconolactonase; Provisional | 99.54 | |
| TIGR02604 | 367 | Piru_Ver_Nterm putative membrane-bound dehydrogena | 99.52 | |
| COG3391 | 381 | Uncharacterized conserved protein [Function unknow | 99.44 | |
| COG3386 | 307 | Gluconolactonase [Carbohydrate transport and metab | 99.43 | |
| COG2706 | 346 | 3-carboxymuconate cyclase [Carbohydrate transport | 99.43 | |
| COG3391 | 381 | Uncharacterized conserved protein [Function unknow | 99.4 | |
| TIGR02658 | 352 | TTQ_MADH_Hv methylamine dehydrogenase heavy chain. | 99.34 | |
| TIGR02604 | 367 | Piru_Ver_Nterm putative membrane-bound dehydrogena | 99.3 | |
| TIGR03866 | 300 | PQQ_ABC_repeats PQQ-dependent catabolism-associate | 99.29 | |
| COG2706 | 346 | 3-carboxymuconate cyclase [Carbohydrate transport | 99.26 | |
| TIGR03866 | 300 | PQQ_ABC_repeats PQQ-dependent catabolism-associate | 99.26 | |
| PF07995 | 331 | GSDH: Glucose / Sorbosone dehydrogenase; InterPro: | 99.24 | |
| PF05096 | 264 | Glu_cyclase_2: Glutamine cyclotransferase; InterPr | 99.21 | |
| PF06977 | 248 | SdiA-regulated: SdiA-regulated; InterPro: IPR00972 | 99.07 | |
| PF06977 | 248 | SdiA-regulated: SdiA-regulated; InterPro: IPR00972 | 99.03 | |
| PF03022 | 287 | MRJP: Major royal jelly protein; InterPro: IPR0035 | 99.0 | |
| PF02239 | 369 | Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO | 98.99 | |
| PF03088 | 89 | Str_synth: Strictosidine synthase; InterPro: IPR01 | 98.98 | |
| TIGR03606 | 454 | non_repeat_PQQ dehydrogenase, PQQ-dependent, s-GDH | 98.94 | |
| TIGR02658 | 352 | TTQ_MADH_Hv methylamine dehydrogenase heavy chain. | 98.94 | |
| KOG4659 | 1899 | consensus Uncharacterized conserved protein (Rhs f | 98.93 | |
| KOG4659 | 1899 | consensus Uncharacterized conserved protein (Rhs f | 98.9 | |
| PF02239 | 369 | Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO | 98.89 | |
| KOG1214 | 1289 | consensus Nidogen and related basement membrane pr | 98.85 | |
| KOG4499 | 310 | consensus Ca2+-binding protein Regucalcin/SMP30 [I | 98.74 | |
| KOG1214 | 1289 | consensus Nidogen and related basement membrane pr | 98.64 | |
| KOG1520 | 376 | consensus Predicted alkaloid synthase/Surface muci | 98.61 | |
| COG3204 | 316 | Uncharacterized protein conserved in bacteria [Fun | 98.58 | |
| COG3823 | 262 | Glutamine cyclotransferase [Posttranslational modi | 98.55 | |
| cd00200 | 289 | WD40 WD40 domain, found in a number of eukaryotic | 98.53 | |
| PF05096 | 264 | Glu_cyclase_2: Glutamine cyclotransferase; InterPr | 98.52 | |
| TIGR03606 | 454 | non_repeat_PQQ dehydrogenase, PQQ-dependent, s-GDH | 98.52 | |
| cd00200 | 289 | WD40 WD40 domain, found in a number of eukaryotic | 98.51 | |
| PRK02888 | 635 | nitrous-oxide reductase; Validated | 98.5 | |
| COG3204 | 316 | Uncharacterized protein conserved in bacteria [Fun | 98.46 | |
| COG2133 | 399 | Glucose/sorbosone dehydrogenases [Carbohydrate tra | 98.44 | |
| PF07995 | 331 | GSDH: Glucose / Sorbosone dehydrogenase; InterPro: | 98.4 | |
| PRK04792 | 448 | tolB translocation protein TolB; Provisional | 98.29 | |
| PRK05137 | 435 | tolB translocation protein TolB; Provisional | 98.29 | |
| KOG0291 | 893 | consensus WD40-repeat-containing subunit of the 18 | 98.26 | |
| PF03088 | 89 | Str_synth: Strictosidine synthase; InterPro: IPR01 | 98.26 | |
| KOG1446 | 311 | consensus Histone H3 (Lys4) methyltransferase comp | 98.26 | |
| PF07433 | 305 | DUF1513: Protein of unknown function (DUF1513); In | 98.25 | |
| TIGR03032 | 335 | conserved hypothetical protein TIGR03032. This pro | 98.17 | |
| KOG1446 | 311 | consensus Histone H3 (Lys4) methyltransferase comp | 98.15 | |
| KOG0315 | 311 | consensus G-protein beta subunit-like protein (con | 98.14 | |
| PRK04043 | 419 | tolB translocation protein TolB; Provisional | 98.14 | |
| PRK03629 | 429 | tolB translocation protein TolB; Provisional | 98.09 | |
| PRK04922 | 433 | tolB translocation protein TolB; Provisional | 98.08 | |
| PRK02888 | 635 | nitrous-oxide reductase; Validated | 98.08 | |
| PRK01742 | 429 | tolB translocation protein TolB; Provisional | 98.07 | |
| PRK11138 | 394 | outer membrane biogenesis protein BamB; Provisiona | 98.07 | |
| TIGR03118 | 336 | PEPCTERM_chp_1 conserved hypothetical protein TIGR | 98.06 | |
| PF07433 | 305 | DUF1513: Protein of unknown function (DUF1513); In | 98.05 | |
| PRK02889 | 427 | tolB translocation protein TolB; Provisional | 98.03 | |
| PRK04792 | 448 | tolB translocation protein TolB; Provisional | 98.02 | |
| TIGR03300 | 377 | assembly_YfgL outer membrane assembly lipoprotein | 98.02 | |
| TIGR02800 | 417 | propeller_TolB tol-pal system beta propeller repea | 98.0 | |
| PF13449 | 326 | Phytase-like: Esterase-like activity of phytase | 97.99 | |
| PRK02889 | 427 | tolB translocation protein TolB; Provisional | 97.98 | |
| PRK00178 | 430 | tolB translocation protein TolB; Provisional | 97.97 | |
| PRK11138 | 394 | outer membrane biogenesis protein BamB; Provisiona | 97.97 | |
| PRK03629 | 429 | tolB translocation protein TolB; Provisional | 97.96 | |
| TIGR03032 | 335 | conserved hypothetical protein TIGR03032. This pro | 97.95 | |
| PRK05137 | 435 | tolB translocation protein TolB; Provisional | 97.94 | |
| PRK04922 | 433 | tolB translocation protein TolB; Provisional | 97.93 | |
| KOG0315 | 311 | consensus G-protein beta subunit-like protein (con | 97.91 | |
| PF13360 | 238 | PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A | 97.9 | |
| KOG0279 | 315 | consensus G protein beta subunit-like protein [Sig | 97.9 | |
| KOG0291 | 893 | consensus WD40-repeat-containing subunit of the 18 | 97.88 | |
| COG2133 | 399 | Glucose/sorbosone dehydrogenases [Carbohydrate tra | 97.88 | |
| KOG0318 | 603 | consensus WD40 repeat stress protein/actin interac | 97.87 | |
| PF01436 | 28 | NHL: NHL repeat; InterPro: IPR001258 The NHL repea | 97.83 | |
| PF13360 | 238 | PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A | 97.82 | |
| TIGR03300 | 377 | assembly_YfgL outer membrane assembly lipoprotein | 97.82 | |
| TIGR02800 | 417 | propeller_TolB tol-pal system beta propeller repea | 97.81 | |
| PRK01029 | 428 | tolB translocation protein TolB; Provisional | 97.8 | |
| PRK01742 | 429 | tolB translocation protein TolB; Provisional | 97.78 | |
| PF01436 | 28 | NHL: NHL repeat; InterPro: IPR001258 The NHL repea | 97.77 | |
| KOG0318 | 603 | consensus WD40 repeat stress protein/actin interac | 97.75 | |
| KOG0278 | 334 | consensus Serine/threonine kinase receptor-associa | 97.75 | |
| cd00216 | 488 | PQQ_DH Dehydrogenases with pyrrolo-quinoline quino | 97.75 | |
| KOG2055 | 514 | consensus WD40 repeat protein [General function pr | 97.73 | |
| PF13449 | 326 | Phytase-like: Esterase-like activity of phytase | 97.73 | |
| KOG0266 | 456 | consensus WD40 repeat-containing protein [General | 97.71 | |
| KOG0286 | 343 | consensus G-protein beta subunit [General function | 97.68 | |
| TIGR03118 | 336 | PEPCTERM_chp_1 conserved hypothetical protein TIGR | 97.68 | |
| COG3823 | 262 | Glutamine cyclotransferase [Posttranslational modi | 97.68 | |
| PTZ00421 | 493 | coronin; Provisional | 97.66 | |
| TIGR03075 | 527 | PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methan | 97.65 | |
| PRK00178 | 430 | tolB translocation protein TolB; Provisional | 97.62 | |
| KOG0643 | 327 | consensus Translation initiation factor 3, subunit | 97.6 | |
| KOG0286 | 343 | consensus G-protein beta subunit [General function | 97.59 | |
| KOG1407 | 313 | consensus WD40 repeat protein [Function unknown] | 97.53 | |
| KOG0266 | 456 | consensus WD40 repeat-containing protein [General | 97.53 | |
| KOG0282 | 503 | consensus mRNA splicing factor [Function unknown] | 97.52 | |
| PF05787 | 524 | DUF839: Bacterial protein of unknown function (DUF | 97.5 | |
| KOG0278 | 334 | consensus Serine/threonine kinase receptor-associa | 97.5 | |
| KOG2055 | 514 | consensus WD40 repeat protein [General function pr | 97.43 | |
| cd00216 | 488 | PQQ_DH Dehydrogenases with pyrrolo-quinoline quino | 97.41 | |
| KOG0279 | 315 | consensus G protein beta subunit-like protein [Sig | 97.39 | |
| PTZ00420 | 568 | coronin; Provisional | 97.39 | |
| PF06433 | 342 | Me-amine-dh_H: Methylamine dehydrogenase heavy cha | 97.36 | |
| PRK04043 | 419 | tolB translocation protein TolB; Provisional | 97.36 | |
| KOG0289 | 506 | consensus mRNA splicing factor [General function p | 97.32 | |
| KOG0275 | 508 | consensus Conserved WD40 repeat-containing protein | 97.3 | |
| KOG1274 | 933 | consensus WD40 repeat protein [General function pr | 97.22 | |
| COG3490 | 366 | Uncharacterized protein conserved in bacteria [Fun | 97.19 | |
| PF02333 | 381 | Phytase: Phytase; InterPro: IPR003431 Phytase (3.1 | 97.17 | |
| PF06433 | 342 | Me-amine-dh_H: Methylamine dehydrogenase heavy cha | 97.17 | |
| PF02333 | 381 | Phytase: Phytase; InterPro: IPR003431 Phytase (3.1 | 97.13 | |
| PF05694 | 461 | SBP56: 56kDa selenium binding protein (SBP56); Int | 97.12 | |
| KOG0272 | 459 | consensus U4/U6 small nuclear ribonucleoprotein Pr | 97.1 | |
| KOG0772 | 641 | consensus Uncharacterized conserved protein, conta | 97.07 | |
| PF05787 | 524 | DUF839: Bacterial protein of unknown function (DUF | 97.06 | |
| PF05694 | 461 | SBP56: 56kDa selenium binding protein (SBP56); Int | 97.06 | |
| KOG0282 | 503 | consensus mRNA splicing factor [Function unknown] | 97.04 | |
| COG3211 | 616 | PhoX Predicted phosphatase [General function predi | 97.04 | |
| COG3211 | 616 | PhoX Predicted phosphatase [General function predi | 97.01 | |
| PF01731 | 86 | Arylesterase: Arylesterase; InterPro: IPR002640 Th | 96.99 | |
| KOG2110 | 391 | consensus Uncharacterized conserved protein, conta | 96.89 | |
| COG3292 | 671 | Predicted periplasmic ligand-binding sensor domain | 96.87 | |
| PLN00181 | 793 | protein SPA1-RELATED; Provisional | 96.84 | |
| KOG2096 | 420 | consensus WD40 repeat protein [General function pr | 96.83 | |
| KOG0772 | 641 | consensus Uncharacterized conserved protein, conta | 96.81 | |
| KOG1539 | 910 | consensus WD repeat protein [General function pred | 96.76 | |
| PTZ00421 | 493 | coronin; Provisional | 96.71 | |
| KOG0292 | 1202 | consensus Vesicle coat complex COPI, alpha subunit | 96.7 | |
| PLN00181 | 793 | protein SPA1-RELATED; Provisional | 96.68 | |
| PF14269 | 299 | Arylsulfotran_2: Arylsulfotransferase (ASST) | 96.64 | |
| COG1520 | 370 | FOG: WD40-like repeat [Function unknown] | 96.62 | |
| COG3292 | 671 | Predicted periplasmic ligand-binding sensor domain | 96.59 | |
| KOG2110 | 391 | consensus Uncharacterized conserved protein, conta | 96.59 | |
| COG1520 | 370 | FOG: WD40-like repeat [Function unknown] | 96.58 | |
| TIGR02276 | 42 | beta_rpt_yvtn 40-residue YVTN family beta-propelle | 96.55 | |
| smart00284 | 255 | OLF Olfactomedin-like domains. | 96.52 | |
| PTZ00420 | 568 | coronin; Provisional | 96.51 | |
| PRK01029 | 428 | tolB translocation protein TolB; Provisional | 96.4 | |
| KOG0263 | 707 | consensus Transcription initiation factor TFIID, s | 96.32 | |
| KOG0272 | 459 | consensus U4/U6 small nuclear ribonucleoprotein Pr | 96.31 | |
| TIGR03075 | 527 | PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methan | 96.27 | |
| KOG0293 | 519 | consensus WD40 repeat-containing protein [Function | 96.11 | |
| KOG0271 | 480 | consensus Notchless-like WD40 repeat-containing pr | 96.07 | |
| KOG2106 | 626 | consensus Uncharacterized conserved protein, conta | 96.01 | |
| PRK13616 | 591 | lipoprotein LpqB; Provisional | 95.97 | |
| KOG1273 | 405 | consensus WD40 repeat protein [General function pr | 95.95 | |
| KOG0296 | 399 | consensus Angio-associated migratory cell protein | 95.94 | |
| KOG0296 | 399 | consensus Angio-associated migratory cell protein | 95.91 | |
| smart00135 | 43 | LY Low-density lipoprotein-receptor YWTD domain. T | 95.9 | |
| COG3490 | 366 | Uncharacterized protein conserved in bacteria [Fun | 95.9 | |
| KOG0283 | 712 | consensus WD40 repeat-containing protein [Function | 95.87 | |
| KOG0643 | 327 | consensus Translation initiation factor 3, subunit | 95.83 | |
| smart00135 | 43 | LY Low-density lipoprotein-receptor YWTD domain. T | 95.82 | |
| KOG0639 | 705 | consensus Transducin-like enhancer of split protei | 95.81 | |
| KOG0639 | 705 | consensus Transducin-like enhancer of split protei | 95.77 | |
| KOG2048 | 691 | consensus WD40 repeat protein [General function pr | 95.64 | |
| KOG0293 | 519 | consensus WD40 repeat-containing protein [Function | 95.61 | |
| KOG0263 | 707 | consensus Transcription initiation factor TFIID, s | 95.54 | |
| PF00058 | 42 | Ldl_recept_b: Low-density lipoprotein receptor rep | 95.53 | |
| PF05935 | 477 | Arylsulfotrans: Arylsulfotransferase (ASST); Inter | 95.51 | |
| KOG0646 | 476 | consensus WD40 repeat protein [General function pr | 95.48 | |
| KOG1539 | 910 | consensus WD repeat protein [General function pred | 95.43 | |
| KOG0646 | 476 | consensus WD40 repeat protein [General function pr | 95.43 | |
| PF08662 | 194 | eIF2A: Eukaryotic translation initiation factor eI | 95.42 | |
| KOG2106 | 626 | consensus Uncharacterized conserved protein, conta | 95.42 | |
| KOG2048 | 691 | consensus WD40 repeat protein [General function pr | 95.41 | |
| KOG0310 | 487 | consensus Conserved WD40 repeat-containing protein | 95.37 | |
| COG4946 | 668 | Uncharacterized protein related to the periplasmic | 95.36 | |
| KOG0289 | 506 | consensus mRNA splicing factor [General function p | 95.26 | |
| KOG2139 | 445 | consensus WD40 repeat protein [General function pr | 95.18 | |
| KOG1274 | 933 | consensus WD40 repeat protein [General function pr | 95.09 | |
| PF01731 | 86 | Arylesterase: Arylesterase; InterPro: IPR002640 Th | 95.07 | |
| COG4946 | 668 | Uncharacterized protein related to the periplasmic | 95.05 | |
| KOG0271 | 480 | consensus Notchless-like WD40 repeat-containing pr | 95.04 | |
| KOG2919 | 406 | consensus Guanine nucleotide-binding protein [Gene | 95.0 | |
| PRK13684 | 334 | Ycf48-like protein; Provisional | 94.97 | |
| KOG0319 | 775 | consensus WD40-repeat-containing subunit of the 18 | 94.91 | |
| COG4247 | 364 | Phy 3-phytase (myo-inositol-hexaphosphate 3-phosph | 94.75 | |
| COG0823 | 425 | TolB Periplasmic component of the Tol biopolymer t | 94.56 | |
| KOG0285 | 460 | consensus Pleiotropic regulator 1 [RNA processing | 94.45 | |
| KOG0284 | 464 | consensus Polyadenylation factor I complex, subuni | 94.42 | |
| TIGR02276 | 42 | beta_rpt_yvtn 40-residue YVTN family beta-propelle | 94.39 | |
| KOG0273 | 524 | consensus Beta-transducin family (WD-40 repeat) pr | 94.38 | |
| PHA02713 | 557 | hypothetical protein; Provisional | 94.37 | |
| PF08662 | 194 | eIF2A: Eukaryotic translation initiation factor eI | 94.25 | |
| KOG0316 | 307 | consensus Conserved WD40 repeat-containing protein | 94.24 | |
| KOG1273 | 405 | consensus WD40 repeat protein [General function pr | 94.18 | |
| KOG4649 | 354 | consensus PQQ (pyrrolo-quinoline quinone) repeat p | 94.17 | |
| PF02191 | 250 | OLF: Olfactomedin-like domain; InterPro: IPR003112 | 94.09 | |
| KOG0275 | 508 | consensus Conserved WD40 repeat-containing protein | 93.89 | |
| KOG4378 | 673 | consensus Nuclear protein COP1 [Signal transductio | 93.85 | |
| KOG0316 | 307 | consensus Conserved WD40 repeat-containing protein | 93.68 | |
| KOG0265 | 338 | consensus U5 snRNP-specific protein-like factor an | 93.56 | |
| PF14517 | 229 | Tachylectin: Tachylectin; PDB: 1TL2_A. | 93.55 | |
| KOG1407 | 313 | consensus WD40 repeat protein [Function unknown] | 93.53 | |
| COG0823 | 425 | TolB Periplasmic component of the Tol biopolymer t | 93.42 | |
| KOG0303 | 472 | consensus Actin-binding protein Coronin, contains | 93.4 | |
| PF00058 | 42 | Ldl_recept_b: Low-density lipoprotein receptor rep | 93.39 | |
| KOG4441 | 571 | consensus Proteins containing BTB/POZ and Kelch do | 93.37 | |
| PF14583 | 386 | Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C | 93.2 | |
| smart00284 | 255 | OLF Olfactomedin-like domains. | 93.13 | |
| TIGR03074 | 764 | PQQ_membr_DH membrane-bound PQQ-dependent dehydrog | 93.08 | |
| PF00930 | 353 | DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-termin | 93.05 | |
| PF10647 | 253 | Gmad1: Lipoprotein LpqB beta-propeller domain; Int | 92.93 | |
| KOG3545 | 249 | consensus Olfactomedin and related extracellular m | 92.77 | |
| KOG0640 | 430 | consensus mRNA cleavage stimulating factor complex | 92.43 | |
| KOG0284 | 464 | consensus Polyadenylation factor I complex, subuni | 92.39 | |
| KOG0294 | 362 | consensus WD40 repeat-containing protein [Function | 92.12 | |
| PHA02713 | 557 | hypothetical protein; Provisional | 92.09 | |
| KOG4649 | 354 | consensus PQQ (pyrrolo-quinoline quinone) repeat p | 92.07 | |
| PHA02790 | 480 | Kelch-like protein; Provisional | 91.93 | |
| PF14583 | 386 | Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C | 91.91 | |
| KOG0310 | 487 | consensus Conserved WD40 repeat-containing protein | 91.62 | |
| KOG0268 | 433 | consensus Sof1-like rRNA processing protein (conta | 91.56 | |
| KOG0294 | 362 | consensus WD40 repeat-containing protein [Function | 91.47 | |
| KOG0771 | 398 | consensus Prolactin regulatory element-binding pro | 91.46 | |
| KOG0319 | 775 | consensus WD40-repeat-containing subunit of the 18 | 91.37 | |
| PF06739 | 38 | SBBP: Beta-propeller repeat; InterPro: IPR010620 T | 91.34 | |
| KOG0647 | 347 | consensus mRNA export protein (contains WD40 repea | 91.29 | |
| PF14269 | 299 | Arylsulfotran_2: Arylsulfotransferase (ASST) | 91.04 | |
| KOG0640 | 430 | consensus mRNA cleavage stimulating factor complex | 91.04 | |
| PF14339 | 236 | DUF4394: Domain of unknown function (DUF4394) | 90.96 | |
| KOG2096 | 420 | consensus WD40 repeat protein [General function pr | 90.91 | |
| COG5276 | 370 | Uncharacterized conserved protein [Function unknow | 90.76 | |
| KOG2321 | 703 | consensus WD40 repeat protein [General function pr | 90.73 | |
| KOG4378 | 673 | consensus Nuclear protein COP1 [Signal transductio | 90.6 | |
| PF02191 | 250 | OLF: Olfactomedin-like domain; InterPro: IPR003112 | 90.51 | |
| KOG0273 | 524 | consensus Beta-transducin family (WD-40 repeat) pr | 90.5 | |
| KOG0285 | 460 | consensus Pleiotropic regulator 1 [RNA processing | 90.4 | |
| KOG0645 | 312 | consensus WD40 repeat protein [General function pr | 90.23 | |
| PHA03098 | 534 | kelch-like protein; Provisional | 90.21 | |
| KOG0973 | 942 | consensus Histone transcription regulator HIRA, WD | 90.12 | |
| PRK13616 | 591 | lipoprotein LpqB; Provisional | 89.96 | |
| KOG0268 | 433 | consensus Sof1-like rRNA processing protein (conta | 89.66 | |
| KOG0645 | 312 | consensus WD40 repeat protein [General function pr | 89.56 | |
| KOG1215 | 877 | consensus Low-density lipoprotein receptors contai | 89.31 | |
| KOG3545 | 249 | consensus Olfactomedin and related extracellular m | 89.12 | |
| KOG2139 | 445 | consensus WD40 repeat protein [General function pr | 89.11 | |
| KOG0918 | 476 | consensus Selenium-binding protein [Inorganic ion | 89.08 | |
| KOG0306 | 888 | consensus WD40-repeat-containing subunit of the 18 | 89.02 | |
| KOG0303 | 472 | consensus Actin-binding protein Coronin, contains | 88.58 | |
| PF14517 | 229 | Tachylectin: Tachylectin; PDB: 1TL2_A. | 88.55 | |
| KOG1215 | 877 | consensus Low-density lipoprotein receptors contai | 88.49 | |
| KOG0264 | 422 | consensus Nucleosome remodeling factor, subunit CA | 88.1 | |
| KOG1538 | 1081 | consensus Uncharacterized conserved protein WDR10, | 88.01 | |
| KOG0299 | 479 | consensus U3 snoRNP-associated protein (contains W | 87.64 | |
| KOG1538 | 1081 | consensus Uncharacterized conserved protein WDR10, | 87.51 | |
| KOG1009 | 434 | consensus Chromatin assembly complex 1 subunit B/C | 87.07 | |
| COG5276 | 370 | Uncharacterized conserved protein [Function unknow | 87.0 | |
| KOG1963 | 792 | consensus WD40 repeat protein [General function pr | 86.97 | |
| KOG2321 | 703 | consensus WD40 repeat protein [General function pr | 86.94 | |
| KOG3881 | 412 | consensus Uncharacterized conserved protein [Funct | 86.39 | |
| KOG1445 | 1012 | consensus Tumor-specific antigen (contains WD repe | 86.36 | |
| KOG0973 | 942 | consensus Histone transcription regulator HIRA, WD | 86.19 | |
| KOG0283 | 712 | consensus WD40 repeat-containing protein [Function | 85.47 | |
| PF10647 | 253 | Gmad1: Lipoprotein LpqB beta-propeller domain; Int | 85.22 | |
| KOG3881 | 412 | consensus Uncharacterized conserved protein [Funct | 85.03 | |
| TIGR03548 | 323 | mutarot_permut cyclically-permuted mutatrotase fam | 84.84 | |
| KOG0642 | 577 | consensus Cell-cycle nuclear protein, contains WD- | 84.83 | |
| KOG0650 | 733 | consensus WD40 repeat nucleolar protein Bop1, invo | 84.32 | |
| PF01011 | 38 | PQQ: PQQ enzyme repeat family.; InterPro: IPR00237 | 84.27 | |
| PLN00033 | 398 | photosystem II stability/assembly factor; Provisio | 83.5 | |
| PF06739 | 38 | SBBP: Beta-propeller repeat; InterPro: IPR010620 T | 83.14 | |
| KOG0288 | 459 | consensus WD40 repeat protein TipD [General functi | 83.12 | |
| KOG0292 | 1202 | consensus Vesicle coat complex COPI, alpha subunit | 82.67 | |
| PF00930 | 353 | DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-termin | 82.26 | |
| KOG0299 | 479 | consensus U3 snoRNP-associated protein (contains W | 82.18 | |
| KOG1188 | 376 | consensus WD40 repeat protein [General function pr | 81.88 | |
| PF08553 | 794 | VID27: VID27 cytoplasmic protein; InterPro: IPR013 | 81.61 | |
| PRK13614 | 573 | lipoprotein LpqB; Provisional | 81.38 | |
| PF14298 | 435 | DUF4374: Domain of unknown function (DUF4374) | 81.24 | |
| PLN00033 | 398 | photosystem II stability/assembly factor; Provisio | 80.66 | |
| PF02897 | 414 | Peptidase_S9_N: Prolyl oligopeptidase, N-terminal | 80.6 | |
| PF08553 | 794 | VID27: VID27 cytoplasmic protein; InterPro: IPR013 | 80.36 | |
| PF14339 | 236 | DUF4394: Domain of unknown function (DUF4394) | 80.04 |
| >PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species | Back alignment and domain information |
|---|
Probab=99.97 E-value=3.2e-28 Score=217.44 Aligned_cols=229 Identities=27% Similarity=0.409 Sum_probs=165.3
Q ss_pred cccceEEcC-CCCEEEEEecCCeEEEEECCCCCCCccceeeeEEecccCcCCCccceEEEeCCCCeEEEEEeCcCCCccc
Q 020019 46 FRECAKWDD-SGRRFIVSFLDGGIGQVAVPDDYPPGTVLEEVTLVKDLELTGNGSLGLVLDHPRNRLLVVAADVFGNKYS 124 (332)
Q Consensus 46 ~pegia~d~-~g~~~~~~~~~g~I~~vd~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~vd~~~g~l~v~~~~~~~~~~~ 124 (332)
+|||++|++ +|++|++++..++|+++++.+++. .....+ .|.|++++.++|++|+++..
T Consensus 1 l~Egp~~d~~~g~l~~~D~~~~~i~~~~~~~~~~--------~~~~~~-----~~~G~~~~~~~g~l~v~~~~------- 60 (246)
T PF08450_consen 1 LGEGPVWDPRDGRLYWVDIPGGRIYRVDPDTGEV--------EVIDLP-----GPNGMAFDRPDGRLYVADSG------- 60 (246)
T ss_dssp CEEEEEEETTTTEEEEEETTTTEEEEEETTTTEE--------EEEESS-----SEEEEEEECTTSEEEEEETT-------
T ss_pred CCcceEEECCCCEEEEEEcCCCEEEEEECCCCeE--------EEEecC-----CCceEEEEccCCEEEEEEcC-------
Confidence 489999998 788999998899999999987651 233222 38999999334999999863
Q ss_pred eEEEEECCCCcEEEEEecCCCCCCCCCccceEECCCCcEEEEeCCC--------CeEEEEcCCCceEEEecCCCCCCccc
Q 020019 125 AVAAYDLSTWNRLFLTQLSGPSDGKSCADDVTVDAEGNAYVTDVTG--------SKIWKVGVKGEFLSIISSPLFTPKEW 196 (332)
Q Consensus 125 ~l~~~d~~~g~~~~~~~l~~~~~~~~~~ndiavd~dG~lyvtd~~~--------~~I~~v~~~g~~~~~~~~~~~~~p~~ 196 (332)
.+.++|+++++...............+|||+++|++|++|+|+... +.||+++++++......
T Consensus 61 ~~~~~d~~~g~~~~~~~~~~~~~~~~~~ND~~vd~~G~ly~t~~~~~~~~~~~~g~v~~~~~~~~~~~~~~--------- 131 (246)
T PF08450_consen 61 GIAVVDPDTGKVTVLADLPDGGVPFNRPNDVAVDPDGNLYVTDSGGGGASGIDPGSVYRIDPDGKVTVVAD--------- 131 (246)
T ss_dssp CEEEEETTTTEEEEEEEEETTCSCTEEEEEEEE-TTS-EEEEEECCBCTTCGGSEEEEEEETTSEEEEEEE---------
T ss_pred ceEEEecCCCcEEEEeeccCCCcccCCCceEEEcCCCCEEEEecCCCccccccccceEEECCCCeEEEEec---------
Confidence 3566799999877666653111135799999999999999999754 78999999977655442
Q ss_pred ccCccccCeEEEccCc-eEEEEeCCCCeEEEEeCCCCCC-ccceeEEEEecCCCCCCCCeEEEeCCCeEEEEeCC-ceEE
Q 020019 197 YKNLVGLNGIVYHPDG-FLIVIHTFSGNLFKIDIVDGVG-EGEEIKLIRVAGGPLSFGDGLELLSPTKLVVAGNP-SARL 273 (332)
Q Consensus 197 ~~~~~~~nGi~~~~dG-~Lyva~~~~~~i~~id~~~~~~-~~~~~~~v~~~g~~~~~pdGi~~~~dG~l~va~~~-~~~~ 273 (332)
.+..||||++++|| .||++++..++|++++++.... -......+... ...+.||||++|++|+|||+... ....
T Consensus 132 --~~~~pNGi~~s~dg~~lyv~ds~~~~i~~~~~~~~~~~~~~~~~~~~~~-~~~g~pDG~~vD~~G~l~va~~~~~~I~ 208 (246)
T PF08450_consen 132 --GLGFPNGIAFSPDGKTLYVADSFNGRIWRFDLDADGGELSNRRVFIDFP-GGPGYPDGLAVDSDGNLWVADWGGGRIV 208 (246)
T ss_dssp --EESSEEEEEEETTSSEEEEEETTTTEEEEEEEETTTCCEEEEEEEEE-S-SSSCEEEEEEEBTTS-EEEEEETTTEEE
T ss_pred --CcccccceEECCcchheeecccccceeEEEeccccccceeeeeeEEEcC-CCCcCCCcceEcCCCCEEEEEcCCCEEE
Confidence 23568999999999 9999999999999999974321 00111122333 12246999999999999999743 2344
Q ss_pred EEcCCCceEEEEEeeecCCCcccceEEEE---ECCeEEEEE
Q 020019 274 VESSDGWETAAVVAKFSGPVHRLATAATV---KDGRVYLNH 311 (332)
Q Consensus 274 v~~~dg~~~~~~~~~~~~~~~~~pt~va~---~~g~lyv~~ 311 (332)
++.++| +++..+..| ...||+++| +.++|||++
T Consensus 209 ~~~p~G----~~~~~i~~p-~~~~t~~~fgg~~~~~L~vTt 244 (246)
T PF08450_consen 209 VFDPDG----KLLREIELP-VPRPTNCAFGGPDGKTLYVTT 244 (246)
T ss_dssp EEETTS----CEEEEEE-S-SSSEEEEEEESTTSSEEEEEE
T ss_pred EECCCc----cEEEEEcCC-CCCEEEEEEECCCCCEEEEEe
Confidence 567888 455555555 458999999 348999965
|
These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A .... |
| >COG3386 Gluconolactonase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.95 E-value=2.6e-25 Score=202.66 Aligned_cols=255 Identities=20% Similarity=0.285 Sum_probs=184.0
Q ss_pred eEEEecCCccccceEEcCCCC-EEEEEecCCeEEEEECCCCCCCccceeeeEEecccCcCCCccceEEEeCCCCeEEEEE
Q 020019 37 VYHYHSSSFFRECAKWDDSGR-RFIVSFLDGGIGQVAVPDDYPPGTVLEEVTLVKDLELTGNGSLGLVLDHPRNRLLVVA 115 (332)
Q Consensus 37 ~i~~~~~~~~pegia~d~~g~-~~~~~~~~g~I~~vd~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~vd~~~g~l~v~~ 115 (332)
...+.....+.||+.|+++.+ +|++++..++|+++++.+++. .....|+. .+.++.++.. ++|+++.
T Consensus 17 ~~~~~~~~~~gEgP~w~~~~~~L~w~DI~~~~i~r~~~~~g~~--------~~~~~p~~---~~~~~~~d~~-g~Lv~~~ 84 (307)
T COG3386 17 VTLLDKGATLGEGPVWDPDRGALLWVDILGGRIHRLDPETGKK--------RVFPSPGG---FSSGALIDAG-GRLIACE 84 (307)
T ss_pred eeEeecccccccCccCcCCCCEEEEEeCCCCeEEEecCCcCce--------EEEECCCC---cccceeecCC-CeEEEEc
Confidence 344455556889999999987 777789899999999986752 23334553 4678888885 8888886
Q ss_pred eCcCCCccceEEEEECCCCcE-EEEEecCCCCCCCCCccceEECCCCcEEEEeCC-----------CCeEEEEcCCCceE
Q 020019 116 ADVFGNKYSAVAAYDLSTWNR-LFLTQLSGPSDGKSCADDVTVDAEGNAYVTDVT-----------GSKIWKVGVKGEFL 183 (332)
Q Consensus 116 ~~~~~~~~~~l~~~d~~~g~~-~~~~~l~~~~~~~~~~ndiavd~dG~lyvtd~~-----------~~~I~~v~~~g~~~ 183 (332)
.+ +..++.+++.. ....... +.....++||+.++++|++||++.. .|.||+++++|+..
T Consensus 85 ~g--------~~~~~~~~~~~~t~~~~~~-~~~~~~r~ND~~v~pdG~~wfgt~~~~~~~~~~~~~~G~lyr~~p~g~~~ 155 (307)
T COG3386 85 HG--------VRLLDPDTGGKITLLAEPE-DGLPLNRPNDGVVDPDGRIWFGDMGYFDLGKSEERPTGSLYRVDPDGGVV 155 (307)
T ss_pred cc--------cEEEeccCCceeEEecccc-CCCCcCCCCceeEcCCCCEEEeCCCccccCccccCCcceEEEEcCCCCEE
Confidence 42 56677776665 3333332 2223489999999999999999877 36799999988877
Q ss_pred EEecCCCCCCcccccCccccCeEEEccCc-eEEEEeCCCCeEEEEeCCC--CCCccceeEEEEecCCCCCCCCeEEEeCC
Q 020019 184 SIISSPLFTPKEWYKNLVGLNGIVYHPDG-FLIVIHTFSGNLFKIDIVD--GVGEGEEIKLIRVAGGPLSFGDGLELLSP 260 (332)
Q Consensus 184 ~~~~~~~~~~p~~~~~~~~~nGi~~~~dG-~Lyva~~~~~~i~~id~~~--~~~~~~~~~~v~~~g~~~~~pdGi~~~~d 260 (332)
+.+.. ....+|||||+||| +||++++..++|+|++.+. +...+ ....+... ..-+.|||+++|.+
T Consensus 156 ~l~~~----------~~~~~NGla~SpDg~tly~aDT~~~~i~r~~~d~~~g~~~~-~~~~~~~~-~~~G~PDG~~vDad 223 (307)
T COG3386 156 RLLDD----------DLTIPNGLAFSPDGKTLYVADTPANRIHRYDLDPATGPIGG-RRGFVDFD-EEPGLPDGMAVDAD 223 (307)
T ss_pred EeecC----------cEEecCceEECCCCCEEEEEeCCCCeEEEEecCcccCccCC-cceEEEcc-CCCCCCCceEEeCC
Confidence 65532 24679999999999 9999999999999998873 22211 22223322 23368999999999
Q ss_pred CeEEEEe-CC-ceEEEEcCCCceEEEEEeeecCCCcccceEEEEEC---CeEEE-EEecCcccc-CCccceeeeeec
Q 020019 261 TKLVVAG-NP-SARLVESSDGWETAAVVAKFSGPVHRLATAATVKD---GRVYL-NHMLGFGYP-KKKHALVEAVFS 330 (332)
Q Consensus 261 G~l~va~-~~-~~~~v~~~dg~~~~~~~~~~~~~~~~~pt~va~~~---g~lyv-~~~~g~~~~-~~~~~~~~~~~~ 330 (332)
|++|++. .+ ....++.++| +++..+..|. .+|++++|.+ ++||| +++.++. . ..+.+.+|.+|+
T Consensus 224 G~lw~~a~~~g~~v~~~~pdG----~l~~~i~lP~-~~~t~~~FgG~~~~~L~iTs~~~~~~-~~~~~~~~~G~lf~ 294 (307)
T COG3386 224 GNLWVAAVWGGGRVVRFNPDG----KLLGEIKLPV-KRPTNPAFGGPDLNTLYITSARSGMS-RMLTADPLGGGLFS 294 (307)
T ss_pred CCEEEecccCCceEEEECCCC----cEEEEEECCC-CCCccceEeCCCcCEEEEEecCCCCC-ccccccccCceEEE
Confidence 9999654 33 2455688888 4555555563 6899999944 99999 6777776 5 446688888885
|
|
| >PLN02919 haloacid dehalogenase-like hydrolase family protein | Back alignment and domain information |
|---|
Probab=99.84 E-value=2.9e-18 Score=179.98 Aligned_cols=254 Identities=15% Similarity=0.151 Sum_probs=167.8
Q ss_pred ccccceEEcCC-CCEEEEEecCCeEEEEECCCCCCCccceeeeEEec-c-cCc-C-------CCccceEEEeCCCCeEEE
Q 020019 45 FFRECAKWDDS-GRRFIVSFLDGGIGQVAVPDDYPPGTVLEEVTLVK-D-LEL-T-------GNGSLGLVLDHPRNRLLV 113 (332)
Q Consensus 45 ~~pegia~d~~-g~~~~~~~~~g~I~~vd~~~~~~~~~~~~~~~~~~-~-~~~-~-------~~~~~gi~vd~~~g~l~v 113 (332)
.+|.++++|+. |++|+++..+++|+++|.++.. .. .+.. . .+. . -+.|.||+++++++.|||
T Consensus 568 ~~P~gvavd~~~g~lyVaDs~n~rI~v~d~~G~~-----i~--~ig~~g~~G~~dG~~~~a~f~~P~GIavd~~gn~LYV 640 (1057)
T PLN02919 568 KFPGKLAIDLLNNRLFISDSNHNRIVVTDLDGNF-----IV--QIGSTGEEGLRDGSFEDATFNRPQGLAYNAKKNLLYV 640 (1057)
T ss_pred CCCceEEEECCCCeEEEEECCCCeEEEEeCCCCE-----EE--EEccCCCcCCCCCchhccccCCCcEEEEeCCCCEEEE
Confidence 48999999975 6788888889999999987432 11 1211 0 010 0 136999999987567999
Q ss_pred EEeCcCCCccceEEEEECCCCcEEEEEecCC-----CC------CCCCCccceEECC-CCcEEEEeCCCCeEEEEcCC-C
Q 020019 114 VAADVFGNKYSAVAAYDLSTWNRLFLTQLSG-----PS------DGKSCADDVTVDA-EGNAYVTDVTGSKIWKVGVK-G 180 (332)
Q Consensus 114 ~~~~~~~~~~~~l~~~d~~~g~~~~~~~l~~-----~~------~~~~~~ndiavd~-dG~lyvtd~~~~~I~~v~~~-g 180 (332)
++.. ...|.++|+.++.+.....-.. .+ .....|.++++++ +|++||+|+.+++|++++.. |
T Consensus 641 aDt~-----n~~Ir~id~~~~~V~tlag~G~~g~~~~gg~~~~~~~ln~P~gVa~dp~~g~LyVad~~~~~I~v~d~~~g 715 (1057)
T PLN02919 641 ADTE-----NHALREIDFVNETVRTLAGNGTKGSDYQGGKKGTSQVLNSPWDVCFEPVNEKVYIAMAGQHQIWEYNISDG 715 (1057)
T ss_pred EeCC-----CceEEEEecCCCEEEEEeccCcccCCCCCChhhhHhhcCCCeEEEEecCCCeEEEEECCCCeEEEEECCCC
Confidence 9874 3568889998876544322100 00 0124689999999 57899999999999999986 4
Q ss_pred ceEEEecCCCCC----CcccccCccccCeEEEccCc-eEEEEeCCCCeEEEEeCCCCCCccceeEEEE------------
Q 020019 181 EFLSIISSPLFT----PKEWYKNLVGLNGIVYHPDG-FLIVIHTFSGNLFKIDIVDGVGEGEEIKLIR------------ 243 (332)
Q Consensus 181 ~~~~~~~~~~~~----~p~~~~~~~~~nGi~~~~dG-~Lyva~~~~~~i~~id~~~~~~~~~~~~~v~------------ 243 (332)
....+..+.... .......+..|+||++++|| +|||++..+++|.+++++++. ...+.
T Consensus 716 ~v~~~~G~G~~~~~~g~~~~~~~~~~P~GIavspdG~~LYVADs~n~~Irv~D~~tg~-----~~~~~gg~~~~~~~l~~ 790 (1057)
T PLN02919 716 VTRVFSGDGYERNLNGSSGTSTSFAQPSGISLSPDLKELYIADSESSSIRALDLKTGG-----SRLLAGGDPTFSDNLFK 790 (1057)
T ss_pred eEEEEecCCccccCCCCccccccccCccEEEEeCCCCEEEEEECCCCeEEEEECCCCc-----EEEEEecccccCccccc
Confidence 443333221100 01111245689999999999 799999999999999998652 11111
Q ss_pred ec---C----CCCCCCCeEEEeCCCeEEEEeC--CceEEEEcCCCceEEEEEeeec---------CCCcccceEEEE-EC
Q 020019 244 VA---G----GPLSFGDGLELLSPTKLVVAGN--PSARLVESSDGWETAAVVAKFS---------GPVHRLATAATV-KD 304 (332)
Q Consensus 244 ~~---g----~~~~~pdGi~~~~dG~l~va~~--~~~~~v~~~dg~~~~~~~~~~~---------~~~~~~pt~va~-~~ 304 (332)
.. | ..+..|.|++++++|++||++. +.++++...++ ...++..... ...+..|.++++ .+
T Consensus 791 fG~~dG~g~~~~l~~P~Gvavd~dG~LYVADs~N~rIrviD~~tg-~v~tiaG~G~~G~~dG~~~~a~l~~P~GIavd~d 869 (1057)
T PLN02919 791 FGDHDGVGSEVLLQHPLGVLCAKDGQIYVADSYNHKIKKLDPATK-RVTTLAGTGKAGFKDGKALKAQLSEPAGLALGEN 869 (1057)
T ss_pred ccCCCCchhhhhccCCceeeEeCCCcEEEEECCCCEEEEEECCCC-eEEEEeccCCcCCCCCcccccccCCceEEEEeCC
Confidence 00 0 1245799999999999999984 34444444444 3333332110 124678999999 78
Q ss_pred CeEEEEEecCcc
Q 020019 305 GRVYLNHMLGFG 316 (332)
Q Consensus 305 g~lyv~~~~g~~ 316 (332)
|+|||++.....
T Consensus 870 G~lyVaDt~Nn~ 881 (1057)
T PLN02919 870 GRLFVADTNNSL 881 (1057)
T ss_pred CCEEEEECCCCE
Confidence 899997655444
|
|
| >COG4257 Vgb Streptogramin lyase [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=99.80 E-value=2.8e-17 Score=142.50 Aligned_cols=243 Identities=14% Similarity=0.119 Sum_probs=173.1
Q ss_pred CceeEEE-ecCCccccceEEcCCCCEEEEEecCCeEEEEECCCCCCCccceeeeEEecccCcCCCccceEEEeCCCCeEE
Q 020019 34 ATHVYHY-HSSSFFRECAKWDDSGRRFIVSFLDGGIGQVAVPDDYPPGTVLEEVTLVKDLELTGNGSLGLVLDHPRNRLL 112 (332)
Q Consensus 34 ~~~~i~~-~~~~~~pegia~d~~g~~~~~~~~~g~I~~vd~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~vd~~~g~l~ 112 (332)
....-.| ...|..|..++.++||.+||+....+.|-++|+.+++. + ++. - -.|.+|.||.++++ |..|
T Consensus 50 ~~s~~~fpvp~G~ap~dvapapdG~VWft~qg~gaiGhLdP~tGev-----~--~yp-L--g~Ga~Phgiv~gpd-g~~W 118 (353)
T COG4257 50 DGSSAEFPVPNGSAPFDVAPAPDGAVWFTAQGTGAIGHLDPATGEV-----E--TYP-L--GSGASPHGIVVGPD-GSAW 118 (353)
T ss_pred CCccceeccCCCCCccccccCCCCceEEecCccccceecCCCCCce-----E--EEe-c--CCCCCCceEEECCC-CCee
Confidence 3444444 45678999999999999999998899999999999873 2 222 1 13458999999997 9999
Q ss_pred EEEeCcCCCccceEEEEECCCCcEEEEEecCCCCCCCCCccceEECCCCcEEEEeCCCCeEEEEcCCCceEEEecCCCCC
Q 020019 113 VVAADVFGNKYSAVAAYDLSTWNRLFLTQLSGPSDGKSCADDVTVDAEGNAYVTDVTGSKIWKVGVKGEFLSIISSPLFT 192 (332)
Q Consensus 113 v~~~~~~~~~~~~l~~~d~~~g~~~~~~~l~~~~~~~~~~ndiavd~dG~lyvtd~~~~~I~~v~~~g~~~~~~~~~~~~ 192 (332)
|++.. ..|.++|+++++++. ++++... .....|-..+|++|+||||.. .|.--|+|+......++..+
T Consensus 119 itd~~------~aI~R~dpkt~evt~-f~lp~~~-a~~nlet~vfD~~G~lWFt~q-~G~yGrLdPa~~~i~vfpaP--- 186 (353)
T COG4257 119 ITDTG------LAIGRLDPKTLEVTR-FPLPLEH-ADANLETAVFDPWGNLWFTGQ-IGAYGRLDPARNVISVFPAP--- 186 (353)
T ss_pred EecCc------ceeEEecCcccceEE-eeccccc-CCCcccceeeCCCccEEEeec-cccceecCcccCceeeeccC---
Confidence 99863 368899999988764 5663211 246788899999999999976 44445888875544444333
Q ss_pred CcccccCccccCeEEEccCceEEEEeCCCCeEEEEeCCCCCCccceeEEEEecCCCCCCCCeEEEeCCCeEEEEeCCceE
Q 020019 193 PKEWYKNLVGLNGIVYHPDGFLIVIHTFSGNLFKIDIVDGVGEGEEIKLIRVAGGPLSFGDGLELLSPTKLVVAGNPSAR 272 (332)
Q Consensus 193 ~p~~~~~~~~~nGi~~~~dG~Lyva~~~~~~i~~id~~~~~~~~~~~~~v~~~g~~~~~pdGi~~~~dG~l~va~~~~~~ 272 (332)
...+|+|||..|||.+|++....+.|.|||+.++ ..+.+..+........++-.|+.|++|+++.+...
T Consensus 187 ------qG~gpyGi~atpdGsvwyaslagnaiaridp~~~-----~aev~p~P~~~~~gsRriwsdpig~~wittwg~g~ 255 (353)
T COG4257 187 ------QGGGPYGICATPDGSVWYASLAGNAIARIDPFAG-----HAEVVPQPNALKAGSRRIWSDPIGRAWITTWGTGS 255 (353)
T ss_pred ------CCCCCcceEECCCCcEEEEeccccceEEcccccC-----CcceecCCCcccccccccccCccCcEEEeccCCce
Confidence 4568999999999999999999999999999987 33444444211345667888999999999854433
Q ss_pred E-EEcCCCceEEEEEe-eecCCCcccceEEEE-ECCeEEEEEecC
Q 020019 273 L-VESSDGWETAAVVA-KFSGPVHRLATAATV-KDGRVYLNHMLG 314 (332)
Q Consensus 273 ~-v~~~dg~~~~~~~~-~~~~~~~~~pt~va~-~~g~lyv~~~~g 314 (332)
+ .+.+.. ...++ .+++ .-..|.++.+ ..|++|.+....
T Consensus 256 l~rfdPs~---~sW~eypLPg-s~arpys~rVD~~grVW~sea~a 296 (353)
T COG4257 256 LHRFDPSV---TSWIEYPLPG-SKARPYSMRVDRHGRVWLSEADA 296 (353)
T ss_pred eeEeCccc---ccceeeeCCC-CCCCcceeeeccCCcEEeecccc
Confidence 2 334433 12333 2222 2345778888 679999854433
|
|
| >PLN02919 haloacid dehalogenase-like hydrolase family protein | Back alignment and domain information |
|---|
Probab=99.75 E-value=5.6e-16 Score=162.90 Aligned_cols=217 Identities=16% Similarity=0.236 Sum_probs=146.5
Q ss_pred cccceEEcCCCC-EEEEEecCCeEEEEECCCCCCCccceeeeEEecc--cC--c---------CCCccceEEEeCCCCeE
Q 020019 46 FRECAKWDDSGR-RFIVSFLDGGIGQVAVPDDYPPGTVLEEVTLVKD--LE--L---------TGNGSLGLVLDHPRNRL 111 (332)
Q Consensus 46 ~pegia~d~~g~-~~~~~~~~g~I~~vd~~~~~~~~~~~~~~~~~~~--~~--~---------~~~~~~gi~vd~~~g~l 111 (332)
.|.|++++++++ +|+++..+++|.+++..++.. . ++... .+ . ..+.|.+++++++++++
T Consensus 625 ~P~GIavd~~gn~LYVaDt~n~~Ir~id~~~~~V-----~--tlag~G~~g~~~~gg~~~~~~~ln~P~gVa~dp~~g~L 697 (1057)
T PLN02919 625 RPQGLAYNAKKNLLYVADTENHALREIDFVNETV-----R--TLAGNGTKGSDYQGGKKGTSQVLNSPWDVCFEPVNEKV 697 (1057)
T ss_pred CCcEEEEeCCCCEEEEEeCCCceEEEEecCCCEE-----E--EEeccCcccCCCCCChhhhHhhcCCCeEEEEecCCCeE
Confidence 699999999887 566667788999999876541 1 22210 00 0 01368999999966999
Q ss_pred EEEEeCcCCCccceEEEEECCCCcEEEEEe------cCC-CC--CCCCCccceEECCCCc-EEEEeCCCCeEEEEcCC-C
Q 020019 112 LVVAADVFGNKYSAVAAYDLSTWNRLFLTQ------LSG-PS--DGKSCADDVTVDAEGN-AYVTDVTGSKIWKVGVK-G 180 (332)
Q Consensus 112 ~v~~~~~~~~~~~~l~~~d~~~g~~~~~~~------l~~-~~--~~~~~~ndiavd~dG~-lyvtd~~~~~I~~v~~~-g 180 (332)
||++.+ ...|++||..++....... ..+ .. .....|++|+++++|+ |||+|+.+++|.++|++ +
T Consensus 698 yVad~~-----~~~I~v~d~~~g~v~~~~G~G~~~~~~g~~~~~~~~~~P~GIavspdG~~LYVADs~n~~Irv~D~~tg 772 (1057)
T PLN02919 698 YIAMAG-----QHQIWEYNISDGVTRVFSGDGYERNLNGSSGTSTSFAQPSGISLSPDLKELYIADSESSSIRALDLKTG 772 (1057)
T ss_pred EEEECC-----CCeEEEEECCCCeEEEEecCCccccCCCCccccccccCccEEEEeCCCCEEEEEECCCCeEEEEECCCC
Confidence 999864 4578999998776533211 000 00 0125799999999986 99999999999999986 3
Q ss_pred ceEEEec-CCC-------CC---CcccccCccccCeEEEccCceEEEEeCCCCeEEEEeCCCCCCccceeEEEEecC---
Q 020019 181 EFLSIIS-SPL-------FT---PKEWYKNLVGLNGIVYHPDGFLIVIHTFSGNLFKIDIVDGVGEGEEIKLIRVAG--- 246 (332)
Q Consensus 181 ~~~~~~~-~~~-------~~---~p~~~~~~~~~nGi~~~~dG~Lyva~~~~~~i~~id~~~~~~~~~~~~~v~~~g--- 246 (332)
+...+.. .+. +. .+.....+..|.||+++++|.|||+++.+++|.+|+++++ .+..+...|
T Consensus 773 ~~~~~~gg~~~~~~~l~~fG~~dG~g~~~~l~~P~Gvavd~dG~LYVADs~N~rIrviD~~tg-----~v~tiaG~G~~G 847 (1057)
T PLN02919 773 GSRLLAGGDPTFSDNLFKFGDHDGVGSEVLLQHPLGVLCAKDGQIYVADSYNHKIKKLDPATK-----RVTTLAGTGKAG 847 (1057)
T ss_pred cEEEEEecccccCcccccccCCCCchhhhhccCCceeeEeCCCcEEEEECCCCEEEEEECCCC-----eEEEEeccCCcC
Confidence 3322211 110 00 0001123457899999999999999999999999999876 333332111
Q ss_pred --------CCCCCCCeEEEeCCCeEEEEe--CCceEEEEcCCC
Q 020019 247 --------GPLSFGDGLELLSPTKLVVAG--NPSARLVESSDG 279 (332)
Q Consensus 247 --------~~~~~pdGi~~~~dG~l~va~--~~~~~~v~~~dg 279 (332)
..+..|.||+++++|+|||++ |+.++++....+
T Consensus 848 ~~dG~~~~a~l~~P~GIavd~dG~lyVaDt~Nn~Irvid~~~~ 890 (1057)
T PLN02919 848 FKDGKALKAQLSEPAGLALGENGRLFVADTNNSLIRYLDLNKG 890 (1057)
T ss_pred CCCCcccccccCCceEEEEeCCCCEEEEECCCCEEEEEECCCC
Confidence 234579999999999999997 344555555555
|
|
| >PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species | Back alignment and domain information |
|---|
Probab=99.72 E-value=6.4e-16 Score=137.95 Aligned_cols=189 Identities=19% Similarity=0.237 Sum_probs=132.5
Q ss_pred ccceEEc-CCCCEEEEEecCCeEEEEECCCCCCCccceeeeEEeccc-Cc-CCCccceEEEeCCCCeEEEEEeCcCC-Cc
Q 020019 47 RECAKWD-DSGRRFIVSFLDGGIGQVAVPDDYPPGTVLEEVTLVKDL-EL-TGNGSLGLVLDHPRNRLLVVAADVFG-NK 122 (332)
Q Consensus 47 pegia~d-~~g~~~~~~~~~g~I~~vd~~~~~~~~~~~~~~~~~~~~-~~-~~~~~~gi~vd~~~g~l~v~~~~~~~-~~ 122 (332)
|.|++++ ++|++|++.. +.+.++|+.+++. + .+...+ +. ....|+.+++|++ |++|+++..... ..
T Consensus 42 ~~G~~~~~~~g~l~v~~~--~~~~~~d~~~g~~-----~--~~~~~~~~~~~~~~~ND~~vd~~-G~ly~t~~~~~~~~~ 111 (246)
T PF08450_consen 42 PNGMAFDRPDGRLYVADS--GGIAVVDPDTGKV-----T--VLADLPDGGVPFNRPNDVAVDPD-GNLYVTDSGGGGASG 111 (246)
T ss_dssp EEEEEEECTTSEEEEEET--TCEEEEETTTTEE-----E--EEEEEETTCSCTEEEEEEEE-TT-S-EEEEEECCBCTTC
T ss_pred CceEEEEccCCEEEEEEc--CceEEEecCCCcE-----E--EEeeccCCCcccCCCceEEEcCC-CCEEEEecCCCcccc
Confidence 8999999 7777777663 4556668877652 2 233222 11 2247999999996 999999876432 12
Q ss_pred c--ceEEEEECCCCcEEEEEecCCCCCCCCCccceEECCCCc-EEEEeCCCCeEEEEcCC--Cc-eE---EEecCCCCCC
Q 020019 123 Y--SAVAAYDLSTWNRLFLTQLSGPSDGKSCADDVTVDAEGN-AYVTDVTGSKIWKVGVK--GE-FL---SIISSPLFTP 193 (332)
Q Consensus 123 ~--~~l~~~d~~~g~~~~~~~l~~~~~~~~~~ndiavd~dG~-lyvtd~~~~~I~~v~~~--g~-~~---~~~~~~~~~~ 193 (332)
. ++++++++. ++...... +...||+|+++++|+ +|++|+..++|++++.+ +. .. .+...+.
T Consensus 112 ~~~g~v~~~~~~-~~~~~~~~------~~~~pNGi~~s~dg~~lyv~ds~~~~i~~~~~~~~~~~~~~~~~~~~~~~--- 181 (246)
T PF08450_consen 112 IDPGSVYRIDPD-GKVTVVAD------GLGFPNGIAFSPDGKTLYVADSFNGRIWRFDLDADGGELSNRRVFIDFPG--- 181 (246)
T ss_dssp GGSEEEEEEETT-SEEEEEEE------EESSEEEEEEETTSSEEEEEETTTTEEEEEEEETTTCCEEEEEEEEE-SS---
T ss_pred ccccceEEECCC-CeEEEEec------CcccccceEECCcchheeecccccceeEEEeccccccceeeeeeEEEcCC---
Confidence 2 789999998 66544332 247899999999986 89999999999999975 33 21 1221111
Q ss_pred cccccCccccCeEEEccCceEEEEeCCCCeEEEEeCCCCCCccceeEEEEecCCCCCCCCeEEEe-CC-CeEEEEeC
Q 020019 194 KEWYKNLVGLNGIVYHPDGFLIVIHTFSGNLFKIDIVDGVGEGEEIKLIRVAGGPLSFGDGLELL-SP-TKLVVAGN 268 (332)
Q Consensus 194 p~~~~~~~~~nGi~~~~dG~Lyva~~~~~~i~~id~~~~~~~~~~~~~v~~~g~~~~~pdGi~~~-~d-G~l~va~~ 268 (332)
....|+|++++.+|+|||+...+++|++++++ + +.+..+.++ ...|..+++. ++ ++|||+..
T Consensus 182 -----~~g~pDG~~vD~~G~l~va~~~~~~I~~~~p~-G----~~~~~i~~p---~~~~t~~~fgg~~~~~L~vTta 245 (246)
T PF08450_consen 182 -----GPGYPDGLAVDSDGNLWVADWGGGRIVVFDPD-G----KLLREIELP---VPRPTNCAFGGPDGKTLYVTTA 245 (246)
T ss_dssp -----SSCEEEEEEEBTTS-EEEEEETTTEEEEEETT-S----CEEEEEE-S---SSSEEEEEEESTTSSEEEEEEB
T ss_pred -----CCcCCCcceEcCCCCEEEEEcCCCEEEEECCC-c----cEEEEEcCC---CCCEEEEEEECCCCCEEEEEeC
Confidence 11348999999999999999999999999999 5 267777765 2478999995 45 78999863
|
These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A .... |
| >KOG1520 consensus Predicted alkaloid synthase/Surface mucin Hemomucin [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.71 E-value=3.8e-15 Score=135.77 Aligned_cols=201 Identities=19% Similarity=0.196 Sum_probs=132.0
Q ss_pred CccccceEEcCCCCEEEEEecCCeEEEEECCCCCCCcccee-----eeEEecccCc-----CCCccceEEEeCCCCeEEE
Q 020019 44 SFFRECAKWDDSGRRFIVSFLDGGIGQVAVPDDYPPGTVLE-----EVTLVKDLEL-----TGNGSLGLVLDHPRNRLLV 113 (332)
Q Consensus 44 ~~~pegia~d~~g~~~~~~~~~g~I~~vd~~~~~~~~~~~~-----~~~~~~~~~~-----~~~~~~gi~vd~~~g~l~v 113 (332)
...||.+.+|+.+.=-++...+|+|.++......+.. ... ....+.+++. .+..|.||+++...|.|||
T Consensus 53 ~~g~E~~~fd~~~~gp~~~v~dg~il~~~g~~~Gwv~-~~~~~~s~~~~~~~~~~~~~~e~~CGRPLGl~f~~~ggdL~V 131 (376)
T KOG1520|consen 53 LTGPESLLFDPQGGGPYTGVVDGRILKYTGNDDGWVK-FADTKDSTNRSQCCDPGSFETEPLCGRPLGIRFDKKGGDLYV 131 (376)
T ss_pred cCChhhheecccCCCceEEEECCceEEEeccCceEEE-EEeccccccccccCCCcceecccccCCcceEEeccCCCeEEE
Confidence 3477888888877655555556666666543222100 000 0011111100 1246999999998679999
Q ss_pred EEeCcCCCccceEEEEECCCCcEEEEEecCCCCCCCCCccceEECCCCcEEEEeCC-----------------CCeEEEE
Q 020019 114 VAADVFGNKYSAVAAYDLSTWNRLFLTQLSGPSDGKSCADDVTVDAEGNAYVTDVT-----------------GSKIWKV 176 (332)
Q Consensus 114 ~~~~~~~~~~~~l~~~d~~~g~~~~~~~l~~~~~~~~~~ndiavd~dG~lyvtd~~-----------------~~~I~~v 176 (332)
||.. -.|++.+++.++.+.... +..+....+.|++.++++|.+|+||+. +|+++++
T Consensus 132 aDAY------lGL~~V~p~g~~a~~l~~-~~~G~~~kf~N~ldI~~~g~vyFTDSSsk~~~rd~~~a~l~g~~~GRl~~Y 204 (376)
T KOG1520|consen 132 ADAY------LGLLKVGPEGGLAELLAD-EAEGKPFKFLNDLDIDPEGVVYFTDSSSKYDRRDFVFAALEGDPTGRLFRY 204 (376)
T ss_pred Eecc------eeeEEECCCCCcceeccc-cccCeeeeecCceeEcCCCeEEEeccccccchhheEEeeecCCCccceEEe
Confidence 9974 358888988765332211 101222368999999999999999974 4677777
Q ss_pred cCCCceEEEecCCCCCCcccccCccccCeEEEccCc-eEEEEeCCCCeEEEEeCCCCCCccceeEEEEecCCCC-CCCCe
Q 020019 177 GVKGEFLSIISSPLFTPKEWYKNLVGLNGIVYHPDG-FLIVIHTFSGNLFKIDIVDGVGEGEEIKLIRVAGGPL-SFGDG 254 (332)
Q Consensus 177 ~~~g~~~~~~~~~~~~~p~~~~~~~~~nGi~~~~dG-~Lyva~~~~~~i~~id~~~~~~~~~~~~~v~~~g~~~-~~pdG 254 (332)
|+..|...++- .++..||||++++|+ .+.++++...+|.|+.+...+.....+ + . +.+ +.||.
T Consensus 205 D~~tK~~~VLl----------d~L~F~NGlaLS~d~sfvl~~Et~~~ri~rywi~g~k~gt~Ev--F-a--~~LPG~PDN 269 (376)
T KOG1520|consen 205 DPSTKVTKVLL----------DGLYFPNGLALSPDGSFVLVAETTTARIKRYWIKGPKAGTSEV--F-A--EGLPGYPDN 269 (376)
T ss_pred cCcccchhhhh----------hcccccccccCCCCCCEEEEEeeccceeeeeEecCCccCchhh--H-h--hcCCCCCcc
Confidence 77666543332 245679999999999 999999999999999998654311111 1 1 123 58999
Q ss_pred EEEeCCCeEEEEe
Q 020019 255 LELLSPTKLVVAG 267 (332)
Q Consensus 255 i~~~~dG~l~va~ 267 (332)
|..+++|.+||+-
T Consensus 270 IR~~~~G~fWVal 282 (376)
T KOG1520|consen 270 IRRDSTGHFWVAL 282 (376)
T ss_pred eeECCCCCEEEEE
Confidence 9999999999995
|
|
| >PF03022 MRJP: Major royal jelly protein; InterPro: IPR003534 The major royal jelly proteins (MRJPs) comprise 12 | Back alignment and domain information |
|---|
Probab=99.65 E-value=1.8e-14 Score=131.05 Aligned_cols=213 Identities=19% Similarity=0.222 Sum_probs=134.2
Q ss_pred ccceEEEeCCCCeEEEEEeCcCC-------CccceEEEEECCCCcEEEEEecCCCC-CCCCCccceEECCC------CcE
Q 020019 98 GSLGLVLDHPRNRLLVVAADVFG-------NKYSAVAAYDLSTWNRLFLTQLSGPS-DGKSCADDVTVDAE------GNA 163 (332)
Q Consensus 98 ~~~gi~vd~~~g~l~v~~~~~~~-------~~~~~l~~~d~~~g~~~~~~~l~~~~-~~~~~~ndiavd~d------G~l 163 (332)
+++++.+|+. |+|||.|.+... ....+|..||++++++...+.++... .+.++.|++++|.. +-+
T Consensus 2 sV~~v~iD~~-~rLWVlD~G~~~~~~~~~~~~~pKLv~~Dl~t~~li~~~~~p~~~~~~~s~lndl~VD~~~~~~~~~~a 80 (287)
T PF03022_consen 2 SVQRVQIDEC-GRLWVLDSGRPNGLQPPKQVCPPKLVAFDLKTNQLIRRYPFPPDIAPPDSFLNDLVVDVRDGNCDDGFA 80 (287)
T ss_dssp -EEEEEE-TT-SEEEEEE-CCHSSSSTTGHTS--EEEEEETTTTCEEEEEE--CCCS-TCGGEEEEEEECTTTTS-SEEE
T ss_pred cccEEEEcCC-CCEEEEeCCCcCCCCCCCCCCCcEEEEEECCCCcEEEEEECChHHcccccccceEEEEccCCCCcceEE
Confidence 5789999996 999999976321 12368999999999999989886432 23589999999983 358
Q ss_pred EEEeCCCCeEEEEcCC-CceEEEecCCCCCCcc---------cccCccccCeEEEcc---Cc-eEEEEeCCCCeEEEEeC
Q 020019 164 YVTDVTGSKIWKVGVK-GEFLSIISSPLFTPKE---------WYKNLVGLNGIVYHP---DG-FLIVIHTFSGNLFKIDI 229 (332)
Q Consensus 164 yvtd~~~~~I~~v~~~-g~~~~~~~~~~~~~p~---------~~~~~~~~nGi~~~~---dG-~Lyva~~~~~~i~~id~ 229 (332)
|+||...+.|.++|.. |+.-++..+.....|. ......+..||++++ || +||+.-..+.++|+|+.
T Consensus 81 YItD~~~~glIV~dl~~~~s~Rv~~~~~~~~p~~~~~~i~g~~~~~~dg~~gial~~~~~d~r~LYf~~lss~~ly~v~T 160 (287)
T PF03022_consen 81 YITDSGGPGLIVYDLATGKSWRVLHNSFSPDPDAGPFTIGGESFQWPDGIFGIALSPISPDGRWLYFHPLSSRKLYRVPT 160 (287)
T ss_dssp EEEETTTCEEEEEETTTTEEEEEETCGCTTS-SSEEEEETTEEEEETTSEEEEEE-TTSTTS-EEEEEETT-SEEEEEEH
T ss_pred EEeCCCcCcEEEEEccCCcEEEEecCCcceeccccceeccCceEecCCCccccccCCCCCCccEEEEEeCCCCcEEEEEH
Confidence 9999999999999976 6666665542222332 111223578888876 77 99999999999999986
Q ss_pred C---CCCCc-cc----eeEEEEecCCCCCCCCeEEEeCCCeEEEEeCC-ceEEEEcCCC----ceEEEEEeeecCCC-cc
Q 020019 230 V---DGVGE-GE----EIKLIRVAGGPLSFGDGLELLSPTKLVVAGNP-SARLVESSDG----WETAAVVAKFSGPV-HR 295 (332)
Q Consensus 230 ~---~~~~~-~~----~~~~v~~~g~~~~~pdGi~~~~dG~l~va~~~-~~~~v~~~dg----~~~~~~~~~~~~~~-~~ 295 (332)
+ ..... .. .++.+- ...+..+|+++|++|+||++.-. .......+++ .....+.. .++ +.
T Consensus 161 ~~L~~~~~~~~~~~~~~v~~lG---~k~~~s~g~~~D~~G~ly~~~~~~~aI~~w~~~~~~~~~~~~~l~~---d~~~l~ 234 (287)
T PF03022_consen 161 SVLRDPSLSDAQALASQVQDLG---DKGSQSDGMAIDPNGNLYFTDVEQNAIGCWDPDGPYTPENFEILAQ---DPRTLQ 234 (287)
T ss_dssp HHHCSTT--HHH-HHHT-EEEE---E---SECEEEEETTTEEEEEECCCTEEEEEETTTSB-GCCEEEEEE----CC-GS
T ss_pred HHhhCccccccccccccceecc---ccCCCCceEEECCCCcEEEecCCCCeEEEEeCCCCcCccchheeEE---cCceee
Confidence 5 22211 11 122221 11246799999999999999743 2233334444 12222332 355 89
Q ss_pred cceEEEE-E--CCeEEE-EEecCccc
Q 020019 296 LATAATV-K--DGRVYL-NHMLGFGY 317 (332)
Q Consensus 296 ~pt~va~-~--~g~lyv-~~~~g~~~ 317 (332)
||.++.+ . +|.||| ++++..-.
T Consensus 235 ~pd~~~i~~~~~g~L~v~snrl~~~~ 260 (287)
T PF03022_consen 235 WPDGLKIDPEGDGYLWVLSNRLQRFA 260 (287)
T ss_dssp SEEEEEE-T--TS-EEEEE-S--SST
T ss_pred ccceeeeccccCceEEEEECcchHhh
Confidence 9999999 5 599998 77766543
|
5% of the mass, and 82-90% of the protein content [], of honeybee (Apis mellifera) royal jelly. Royal jelly is a substance secreted by the cephalic glands of nurse bees [] and it is used to trigger development of a queen bee from a bee larva. The biological function of the MRJPs is unknown, but they are believed to play a major role in nutrition due to their high essential amino acid content []. Two royal jelly proteins, MRJP3 and MRJP5, contain a tandem repeat that results from a high genetic variablility. This polymorphism may be useful for genotyping individual bees [].; PDB: 3Q6P_B 3Q6K_A 3Q6T_A 2QE8_B. |
| >PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3 | Back alignment and domain information |
|---|
Probab=99.61 E-value=1.8e-12 Score=121.55 Aligned_cols=238 Identities=18% Similarity=0.212 Sum_probs=145.3
Q ss_pred CCccccceEEcCCCCEEEEE-ecCCeEEEEECCC-CCCCccceeeeEEecc----cC---cCCCccceEEEeCCCCeEEE
Q 020019 43 SSFFRECAKWDDSGRRFIVS-FLDGGIGQVAVPD-DYPPGTVLEEVTLVKD----LE---LTGNGSLGLVLDHPRNRLLV 113 (332)
Q Consensus 43 ~~~~pegia~d~~g~~~~~~-~~~g~I~~vd~~~-~~~~~~~~~~~~~~~~----~~---~~~~~~~gi~vd~~~g~l~v 113 (332)
.+..|-.++++++++.+++. ...|.|..++.+. +.. .+....... |. ..+.+|..+.++|+...+|+
T Consensus 85 ~g~~p~~i~~~~~g~~l~vany~~g~v~v~~l~~~g~l----~~~~~~~~~~g~g~~~~rq~~~h~H~v~~~pdg~~v~v 160 (345)
T PF10282_consen 85 GGSSPCHIAVDPDGRFLYVANYGGGSVSVFPLDDDGSL----GEVVQTVRHEGSGPNPDRQEGPHPHQVVFSPDGRFVYV 160 (345)
T ss_dssp SSSCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSEE----EEEEEEEESEEEESSTTTTSSTCEEEEEE-TTSSEEEE
T ss_pred CCCCcEEEEEecCCCEEEEEEccCCeEEEEEccCCccc----ceeeeecccCCCCCcccccccccceeEEECCCCCEEEE
Confidence 56688889999999977766 6788887776654 331 121111111 11 01237889999998667999
Q ss_pred EEeCcCCCccceEEEEECCCCc--EEEEEecCCCCCCCCCccceEECCCCc-EEEEeCCCCeEEEEcCC---CceEEEec
Q 020019 114 VAADVFGNKYSAVAAYDLSTWN--RLFLTQLSGPSDGKSCADDVTVDAEGN-AYVTDVTGSKIWKVGVK---GEFLSIIS 187 (332)
Q Consensus 114 ~~~~~~~~~~~~l~~~d~~~g~--~~~~~~l~~~~~~~~~~ndiavd~dG~-lyvtd~~~~~I~~v~~~---g~~~~~~~ 187 (332)
++.+ ..+|++|+.+... +.....+.-+ ....|..++++|+|+ +|+.+...+.|..++.+ |+....-.
T Consensus 161 ~dlG-----~D~v~~~~~~~~~~~l~~~~~~~~~--~G~GPRh~~f~pdg~~~Yv~~e~s~~v~v~~~~~~~g~~~~~~~ 233 (345)
T PF10282_consen 161 PDLG-----ADRVYVYDIDDDTGKLTPVDSIKVP--PGSGPRHLAFSPDGKYAYVVNELSNTVSVFDYDPSDGSLTEIQT 233 (345)
T ss_dssp EETT-----TTEEEEEEE-TTS-TEEEEEEEECS--TTSSEEEEEE-TTSSEEEEEETTTTEEEEEEEETTTTEEEEEEE
T ss_pred EecC-----CCEEEEEEEeCCCceEEEeeccccc--cCCCCcEEEEcCCcCEEEEecCCCCcEEEEeecccCCceeEEEE
Confidence 8864 4578888776543 5443333212 257899999999985 89999999987776643 44332211
Q ss_pred CCCCCCcccccCccccCeEEEccCc-eEEEEeCCCCeEEEEeC--CCCCCccceeEEEEecCCCCCCCCeEEEeCCCe-E
Q 020019 188 SPLFTPKEWYKNLVGLNGIVYHPDG-FLIVIHTFSGNLFKIDI--VDGVGEGEEIKLIRVAGGPLSFGDGLELLSPTK-L 263 (332)
Q Consensus 188 ~~~~~~p~~~~~~~~~nGi~~~~dG-~Lyva~~~~~~i~~id~--~~~~~~~~~~~~v~~~g~~~~~pdGi~~~~dG~-l 263 (332)
.+.. |........+.+|+++||| .|||++...+.|..|++ +++++ +.+..+...| ..|.+|+++++|+ |
T Consensus 234 ~~~~--~~~~~~~~~~~~i~ispdg~~lyvsnr~~~sI~vf~~d~~~g~l--~~~~~~~~~G---~~Pr~~~~s~~g~~l 306 (345)
T PF10282_consen 234 ISTL--PEGFTGENAPAEIAISPDGRFLYVSNRGSNSISVFDLDPATGTL--TLVQTVPTGG---KFPRHFAFSPDGRYL 306 (345)
T ss_dssp EESC--ETTSCSSSSEEEEEE-TTSSEEEEEECTTTEEEEEEECTTTTTE--EEEEEEEESS---SSEEEEEE-TTSSEE
T ss_pred eeec--cccccccCCceeEEEecCCCEEEEEeccCCEEEEEEEecCCCce--EEEEEEeCCC---CCccEEEEeCCCCEE
Confidence 1111 1001122368899999999 99999999999877666 44532 2344444432 5699999999977 7
Q ss_pred EEEeCCceEE-E---EcCCCceEEEEEeeecCCCcccceEEEE
Q 020019 264 VVAGNPSARL-V---ESSDGWETAAVVAKFSGPVHRLATAATV 302 (332)
Q Consensus 264 ~va~~~~~~~-v---~~~dg~~~~~~~~~~~~~~~~~pt~va~ 302 (332)
||++..+..+ + ...+| ........+. ...|+|+.|
T Consensus 307 ~Va~~~s~~v~vf~~d~~tG-~l~~~~~~~~---~~~p~ci~f 345 (345)
T PF10282_consen 307 YVANQDSNTVSVFDIDPDTG-KLTPVGSSVP---IPSPVCIVF 345 (345)
T ss_dssp EEEETTTTEEEEEEEETTTT-EEEEEEEEEE---SSSEEEEEE
T ss_pred EEEecCCCeEEEEEEeCCCC-cEEEeccccc---CCCCEEEeC
Confidence 7777543222 2 23556 4433333333 456888875
|
1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H. |
| >KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.60 E-value=3.7e-13 Score=114.60 Aligned_cols=250 Identities=14% Similarity=0.171 Sum_probs=150.3
Q ss_pred cceEEcCC-CCEEEEEecCCeEEEEECCCCCCCccceeeeEEecccCcCCCccceEEEeCC-CCeEEEEEeCcCCCccce
Q 020019 48 ECAKWDDS-GRRFIVSFLDGGIGQVAVPDDYPPGTVLEEVTLVKDLELTGNGSLGLVLDHP-RNRLLVVAADVFGNKYSA 125 (332)
Q Consensus 48 egia~d~~-g~~~~~~~~~g~I~~vd~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~vd~~-~g~l~v~~~~~~~~~~~~ 125 (332)
||+.|+.+ +.+|++++..+.|.|+|..+.+ + .+ .-++.|-. .|..+--. .-..|++.-+ ..-.
T Consensus 18 Egp~w~~~~~sLl~VDi~ag~v~r~D~~qn~----v-~r-a~ie~p~~-----ag~ilpv~~~~q~~~v~~G----~kf~ 82 (310)
T KOG4499|consen 18 EGPHWDVERQSLLYVDIEAGEVHRYDIEQNK----V-YR-AKIEGPPS-----AGFILPVEGGPQEFAVGCG----SKFV 82 (310)
T ss_pred CCCceEEecceEEEEEeccCceehhhhhhhh----e-EE-EEEecCcc-----eeEEEEecCCCceEEEeec----ceEE
Confidence 89999887 5688899999999999977654 1 11 23332211 12222111 1123444322 1223
Q ss_pred EEEEECCCCcEEEEEe---cCCCCCCCCCccceEECCCCcEEEEeC---------CCCeEEEEcCCCceEEEecCCCCCC
Q 020019 126 VAAYDLSTWNRLFLTQ---LSGPSDGKSCADDVTVDAEGNAYVTDV---------TGSKIWKVGVKGEFLSIISSPLFTP 193 (332)
Q Consensus 126 l~~~d~~~g~~~~~~~---l~~~~~~~~~~ndiavd~dG~lyvtd~---------~~~~I~~v~~~g~~~~~~~~~~~~~ 193 (332)
+..||........... +. |.....+.||--+||+|+.|..-. ..+.+|+.-++++...+++
T Consensus 83 i~nwd~~~~~a~v~~t~~ev~-~d~kknR~NDgkvdP~Gryy~GtMad~~~~le~~~g~Ly~~~~~h~v~~i~~------ 155 (310)
T KOG4499|consen 83 IVNWDGVSESAKVYRTLFEVQ-PDRKKNRLNDGKVDPDGRYYGGTMADFGDDLEPIGGELYSWLAGHQVELIWN------ 155 (310)
T ss_pred EEEcccccceeeeeeeccccC-chHHhcccccCccCCCCceeeeeeccccccccccccEEEEeccCCCceeeeh------
Confidence 5556643322221122 21 222358999999999999987432 2456666666666544432
Q ss_pred cccccCccccCeEEEccCc-eEEEEeCCCCeE--EEEeCCCCCCccceeEEEEecC-CC--CCCCCeEEEeCCCeEEEEe
Q 020019 194 KEWYKNLVGLNGIVYHPDG-FLIVIHTFSGNL--FKIDIVDGVGEGEEIKLIRVAG-GP--LSFGDGLELLSPTKLVVAG 267 (332)
Q Consensus 194 p~~~~~~~~~nGi~~~~dG-~Lyva~~~~~~i--~~id~~~~~~~~~~~~~v~~~g-~~--~~~pdGi~~~~dG~l~va~ 267 (332)
....+|||+|+.|- ..|+.|+.+..| |.+|..+|.... +...+.+.. ++ -..||||++|.+|+||||.
T Consensus 156 -----~v~IsNgl~Wd~d~K~fY~iDsln~~V~a~dyd~~tG~~sn-r~~i~dlrk~~~~e~~~PDGm~ID~eG~L~Va~ 229 (310)
T KOG4499|consen 156 -----CVGISNGLAWDSDAKKFYYIDSLNYEVDAYDYDCPTGDLSN-RKVIFDLRKSQPFESLEPDGMTIDTEGNLYVAT 229 (310)
T ss_pred -----hccCCccccccccCcEEEEEccCceEEeeeecCCCcccccC-cceeEEeccCCCcCCCCCCcceEccCCcEEEEE
Confidence 23468999999998 999999999999 555566764321 223333321 22 3479999999999999998
Q ss_pred CCceEE-EEcCCCceEEEEEeeecCCCcccceEEEEEC---CeEEE-EEecCcccc-CCccceeeeee
Q 020019 268 NPSARL-VESSDGWETAAVVAKFSGPVHRLATAATVKD---GRVYL-NHMLGFGYP-KKKHALVEAVF 329 (332)
Q Consensus 268 ~~~~~~-v~~~dg~~~~~~~~~~~~~~~~~pt~va~~~---g~lyv-~~~~g~~~~-~~~~~~~~~~~ 329 (332)
.+..++ ...+ .+++++..+..| -...|+++|.+ +-||| ++.-.++.. .-++|.+|..|
T Consensus 230 ~ng~~V~~~dp---~tGK~L~eiklP-t~qitsccFgGkn~d~~yvT~aa~~~dp~~~~~~p~aG~iy 293 (310)
T KOG4499|consen 230 FNGGTVQKVDP---TTGKILLEIKLP-TPQITSCCFGGKNLDILYVTTAAKFDDPVRTNTDPNAGTIY 293 (310)
T ss_pred ecCcEEEEECC---CCCcEEEEEEcC-CCceEEEEecCCCccEEEEEehhcccCchhcccCCCCccEE
Confidence 554343 2332 233566555545 34568899933 68888 444444433 77778777766
|
|
| >COG4257 Vgb Streptogramin lyase [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=99.60 E-value=6.8e-13 Score=115.48 Aligned_cols=231 Identities=12% Similarity=0.057 Sum_probs=155.3
Q ss_pred cCCccccceEEcCCCCEEEEEecCCeEEEEECCCCCCCccceeeeEEecccCc-CCCccceEEEeCCCCeEEEEEeCcCC
Q 020019 42 SSSFFRECAKWDDSGRRFIVSFLDGGIGQVAVPDDYPPGTVLEEVTLVKDLEL-TGNGSLGLVLDHPRNRLLVVAADVFG 120 (332)
Q Consensus 42 ~~~~~pegia~d~~g~~~~~~~~~g~I~~vd~~~~~~~~~~~~~~~~~~~~~~-~~~~~~gi~vd~~~g~l~v~~~~~~~ 120 (332)
+.|..|++|.+++||..|+++... .|.|+++++.+. + +|. -|.. ...+.+...+|+. |+||++...
T Consensus 101 g~Ga~Phgiv~gpdg~~Witd~~~-aI~R~dpkt~ev-----t--~f~-lp~~~a~~nlet~vfD~~-G~lWFt~q~--- 167 (353)
T COG4257 101 GSGASPHGIVVGPDGSAWITDTGL-AIGRLDPKTLEV-----T--RFP-LPLEHADANLETAVFDPW-GNLWFTGQI--- 167 (353)
T ss_pred CCCCCCceEEECCCCCeeEecCcc-eeEEecCcccce-----E--Eee-cccccCCCcccceeeCCC-ccEEEeecc---
Confidence 356799999999999999988433 899999987662 1 232 2221 1125667889996 999999752
Q ss_pred CccceEEEEECCCCcEEEEEecCCCCCCCCCccceEECCCCcEEEEeCCCCeEEEEcCCCceEEEecCCCCCCcccccCc
Q 020019 121 NKYSAVAAYDLSTWNRLFLTQLSGPSDGKSCADDVTVDAEGNAYVTDVTGSKIWKVGVKGEFLSIISSPLFTPKEWYKNL 200 (332)
Q Consensus 121 ~~~~~l~~~d~~~g~~~~~~~l~~~~~~~~~~ndiavd~dG~lyvtd~~~~~I~~v~~~g~~~~~~~~~~~~~p~~~~~~ 200 (332)
+.-.++|+.++.+. .++. | ....|+||++.|||.+|++....+.|.++|+.......+ ..|. ...
T Consensus 168 ---G~yGrLdPa~~~i~-vfpa--P--qG~gpyGi~atpdGsvwyaslagnaiaridp~~~~aev~-----p~P~--~~~ 232 (353)
T COG4257 168 ---GAYGRLDPARNVIS-VFPA--P--QGGGPYGICATPDGSVWYASLAGNAIARIDPFAGHAEVV-----PQPN--ALK 232 (353)
T ss_pred ---ccceecCcccCcee-eecc--C--CCCCCcceEECCCCcEEEEeccccceEEcccccCCccee-----cCCC--ccc
Confidence 22336787665443 3333 2 247899999999999999999999999999863322222 2221 113
Q ss_pred cccCeEEEccCceEEEEeCCCCeEEEEeCCCCCCccceeEEEEecCCCCCCCCeEEEeCCCeEEEEeCCceEEE-EcCCC
Q 020019 201 VGLNGIVYHPDGFLIVIHTFSGNLFKIDIVDGVGEGEEIKLIRVAGGPLSFGDGLELLSPTKLVVAGNPSARLV-ESSDG 279 (332)
Q Consensus 201 ~~~nGi~~~~dG~Lyva~~~~~~i~~id~~~~~~~~~~~~~v~~~g~~~~~pdGi~~~~dG~l~va~~~~~~~v-~~~dg 279 (332)
.+...|-.|+-|++|++++.+++++||++... .=.+.++++ ....|+.|.+|.-|++|..+...+-+. +.+
T Consensus 233 ~gsRriwsdpig~~wittwg~g~l~rfdPs~~-----sW~eypLPg-s~arpys~rVD~~grVW~sea~agai~rfdp-- 304 (353)
T COG4257 233 AGSRRIWSDPIGRAWITTWGTGSLHRFDPSVT-----SWIEYPLPG-SKARPYSMRVDRHGRVWLSEADAGAIGRFDP-- 304 (353)
T ss_pred ccccccccCccCcEEEeccCCceeeEeCcccc-----cceeeeCCC-CCCCcceeeeccCCcEEeeccccCceeecCc--
Confidence 46778999999999999999999999999865 344456664 446899999999999999985443332 233
Q ss_pred ceEEEEEeeecCCCcccceEEEE--ECCeEEEEE
Q 020019 280 WETAAVVAKFSGPVHRLATAATV--KDGRVYLNH 311 (332)
Q Consensus 280 ~~~~~~~~~~~~~~~~~pt~va~--~~g~lyv~~ 311 (332)
++++... +..+. .-+-++.+ ..|++|.+.
T Consensus 305 -eta~ftv-~p~pr-~n~gn~ql~gr~ge~W~~e 335 (353)
T COG4257 305 -ETARFTV-LPIPR-PNSGNIQLDGRPGELWFTE 335 (353)
T ss_pred -ccceEEE-ecCCC-CCCCceeccCCCCceeecc
Confidence 2222222 22221 11224555 567888743
|
|
| >PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3 | Back alignment and domain information |
|---|
Probab=99.60 E-value=6.1e-13 Score=124.70 Aligned_cols=251 Identities=16% Similarity=0.215 Sum_probs=156.6
Q ss_pred CCccccceEEcCCCCEEEEE-e---cCCeE--EEEECCCCCCCccceeeeEEecccCcCCCccceEEEeCCCCeEEEEEe
Q 020019 43 SSFFRECAKWDDSGRRFIVS-F---LDGGI--GQVAVPDDYPPGTVLEEVTLVKDLELTGNGSLGLVLDHPRNRLLVVAA 116 (332)
Q Consensus 43 ~~~~pegia~d~~g~~~~~~-~---~~g~I--~~vd~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~vd~~~g~l~v~~~ 116 (332)
.+..|.-++++++++++|+. - ..+.| ++++.++++. +.+......+..|-.++++++...||+++-
T Consensus 35 ~~~~Ps~l~~~~~~~~LY~~~e~~~~~g~v~~~~i~~~~g~L--------~~~~~~~~~g~~p~~i~~~~~g~~l~vany 106 (345)
T PF10282_consen 35 EGENPSWLAVSPDGRRLYVVNEGSGDSGGVSSYRIDPDTGTL--------TLLNSVPSGGSSPCHIAVDPDGRFLYVANY 106 (345)
T ss_dssp ESSSECCEEE-TTSSEEEEEETTSSTTTEEEEEEEETTTTEE--------EEEEEEEESSSCEEEEEECTTSSEEEEEET
T ss_pred CCCCCceEEEEeCCCEEEEEEccccCCCCEEEEEECCCccee--------EEeeeeccCCCCcEEEEEecCCCEEEEEEc
Confidence 44578889999999987776 2 35676 4555543442 222221113457889999998667888775
Q ss_pred CcCCCccceEEEEECCC-CcEEEE---EecC--CCC---CCCCCccceEECCCCc-EEEEeCCCCeEEEEcCCC---ceE
Q 020019 117 DVFGNKYSAVAAYDLST-WNRLFL---TQLS--GPS---DGKSCADDVTVDAEGN-AYVTDVTGSKIWKVGVKG---EFL 183 (332)
Q Consensus 117 ~~~~~~~~~l~~~d~~~-g~~~~~---~~l~--~~~---~~~~~~ndiavd~dG~-lyvtd~~~~~I~~v~~~g---~~~ 183 (332)
. .+.+.+|+++. |+.... .... +|. +....|+.+.++|+|+ +|++|.+..+|+.++.+. ++.
T Consensus 107 ~-----~g~v~v~~l~~~g~l~~~~~~~~~~g~g~~~~rq~~~h~H~v~~~pdg~~v~v~dlG~D~v~~~~~~~~~~~l~ 181 (345)
T PF10282_consen 107 G-----GGSVSVFPLDDDGSLGEVVQTVRHEGSGPNPDRQEGPHPHQVVFSPDGRFVYVPDLGADRVYVYDIDDDTGKLT 181 (345)
T ss_dssp T-----TTEEEEEEECTTSEEEEEEEEEESEEEESSTTTTSSTCEEEEEE-TTSSEEEEEETTTTEEEEEEE-TTS-TEE
T ss_pred c-----CCeEEEEEccCCcccceeeeecccCCCCCcccccccccceeEEECCCCCEEEEEecCCCEEEEEEEeCCCceEE
Confidence 3 35677888765 554433 2221 111 2347899999999986 999999999998887653 232
Q ss_pred EEecCCCCCCcccccCccccCeEEEccCc-eEEEEeCCCCeEEEEeCC--CCCCccceeEEEEecCCC---CCCCCeEEE
Q 020019 184 SIISSPLFTPKEWYKNLVGLNGIVYHPDG-FLIVIHTFSGNLFKIDIV--DGVGEGEEIKLIRVAGGP---LSFGDGLEL 257 (332)
Q Consensus 184 ~~~~~~~~~~p~~~~~~~~~nGi~~~~dG-~Lyva~~~~~~i~~id~~--~~~~~~~~~~~v~~~g~~---~~~pdGi~~ 257 (332)
... . .. .+...+|..++|+||| .+||.+..+++|..++.. +++. +.++.+..-... ...|.+|++
T Consensus 182 ~~~-~--~~----~~~G~GPRh~~f~pdg~~~Yv~~e~s~~v~v~~~~~~~g~~--~~~~~~~~~~~~~~~~~~~~~i~i 252 (345)
T PF10282_consen 182 PVD-S--IK----VPPGSGPRHLAFSPDGKYAYVVNELSNTVSVFDYDPSDGSL--TEIQTISTLPEGFTGENAPAEIAI 252 (345)
T ss_dssp EEE-E--EE----CSTTSSEEEEEE-TTSSEEEEEETTTTEEEEEEEETTTTEE--EEEEEEESCETTSCSSSSEEEEEE
T ss_pred Eee-c--cc----cccCCCCcEEEEcCCcCEEEEecCCCCcEEEEeecccCCce--eEEEEeeeccccccccCCceeEEE
Confidence 211 0 01 1134688999999999 999999999999887777 4421 123333321011 136889999
Q ss_pred eCCCe-EEEEeCCc--eEEEEc--CCCceEEEEEeeecCCCcccceEEEE--ECCeEEEEEecCcccc
Q 020019 258 LSPTK-LVVAGNPS--ARLVES--SDGWETAAVVAKFSGPVHRLATAATV--KDGRVYLNHMLGFGYP 318 (332)
Q Consensus 258 ~~dG~-l~va~~~~--~~~v~~--~dg~~~~~~~~~~~~~~~~~pt~va~--~~g~lyv~~~~g~~~~ 318 (332)
++||+ |||++... +.+... .+| +. +.+..+.. ...+|..+++ .++.|||++..+..+.
T Consensus 253 spdg~~lyvsnr~~~sI~vf~~d~~~g-~l-~~~~~~~~-~G~~Pr~~~~s~~g~~l~Va~~~s~~v~ 317 (345)
T PF10282_consen 253 SPDGRFLYVSNRGSNSISVFDLDPATG-TL-TLVQTVPT-GGKFPRHFAFSPDGRYLYVANQDSNTVS 317 (345)
T ss_dssp -TTSSEEEEEECTTTEEEEEEECTTTT-TE-EEEEEEEE-SSSSEEEEEE-TTSSEEEEEETTTTEEE
T ss_pred ecCCCEEEEEeccCCEEEEEEEecCCC-ce-EEEEEEeC-CCCCccEEEEeCCCCEEEEEecCCCeEE
Confidence 99986 88887443 232232 345 33 33344432 2467999999 6788999887776655
|
1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H. |
| >PRK11028 6-phosphogluconolactonase; Provisional | Back alignment and domain information |
|---|
Probab=99.57 E-value=7.8e-12 Score=116.36 Aligned_cols=247 Identities=11% Similarity=0.132 Sum_probs=147.5
Q ss_pred ccccceEEcCCCCEEEEE-ecCCeEEEEECC-CCCCCccceeeeEEecccCcCCCccceEEEeCCCCeEEEEEeCcCCCc
Q 020019 45 FFRECAKWDDSGRRFIVS-FLDGGIGQVAVP-DDYPPGTVLEEVTLVKDLELTGNGSLGLVLDHPRNRLLVVAADVFGNK 122 (332)
Q Consensus 45 ~~pegia~d~~g~~~~~~-~~~g~I~~vd~~-~~~~~~~~~~~~~~~~~~~~~~~~~~gi~vd~~~g~l~v~~~~~~~~~ 122 (332)
-.|..++++++++.+|+. ...+.|..++.+ +++. +...... .+..|.+|++++++..+|++...
T Consensus 35 ~~~~~l~~spd~~~lyv~~~~~~~i~~~~~~~~g~l--------~~~~~~~-~~~~p~~i~~~~~g~~l~v~~~~----- 100 (330)
T PRK11028 35 GQVQPMVISPDKRHLYVGVRPEFRVLSYRIADDGAL--------TFAAESP-LPGSPTHISTDHQGRFLFSASYN----- 100 (330)
T ss_pred CCCccEEECCCCCEEEEEECCCCcEEEEEECCCCce--------EEeeeec-CCCCceEEEECCCCCEEEEEEcC-----
Confidence 368889999999976655 556777655543 3331 1111111 11368899999985568887643
Q ss_pred cceEEEEECCC-CcEEEEEecCCCCCCCCCccceEECCCCc-EEEEeCCCCeEEEEcCC--CceEEEecCCCCCCccccc
Q 020019 123 YSAVAAYDLST-WNRLFLTQLSGPSDGKSCADDVTVDAEGN-AYVTDVTGSKIWKVGVK--GEFLSIISSPLFTPKEWYK 198 (332)
Q Consensus 123 ~~~l~~~d~~~-g~~~~~~~l~~~~~~~~~~ndiavd~dG~-lyvtd~~~~~I~~v~~~--g~~~~~~~~~~~~~p~~~~ 198 (332)
.+.+.+|+.++ +........ ..+...|+.++++|+|+ +|+++...+.|..++.+ |+....... .... +
T Consensus 101 ~~~v~v~~~~~~g~~~~~~~~---~~~~~~~~~~~~~p~g~~l~v~~~~~~~v~v~d~~~~g~l~~~~~~-~~~~----~ 172 (330)
T PRK11028 101 ANCVSVSPLDKDGIPVAPIQI---IEGLEGCHSANIDPDNRTLWVPCLKEDRIRLFTLSDDGHLVAQEPA-EVTT----V 172 (330)
T ss_pred CCeEEEEEECCCCCCCCceee---ccCCCcccEeEeCCCCCEEEEeeCCCCEEEEEEECCCCcccccCCC-ceec----C
Confidence 35688888863 322111211 01235688899999985 88999999988888764 332110000 0000 1
Q ss_pred CccccCeEEEccCc-eEEEEeCCCCeEEEEeCCC--CCCccceeEEEEecCCCC---CCCCeEEEeCCCe-EEEEeCC-c
Q 020019 199 NLVGLNGIVYHPDG-FLIVIHTFSGNLFKIDIVD--GVGEGEEIKLIRVAGGPL---SFGDGLELLSPTK-LVVAGNP-S 270 (332)
Q Consensus 199 ~~~~~nGi~~~~dG-~Lyva~~~~~~i~~id~~~--~~~~~~~~~~v~~~g~~~---~~pdGi~~~~dG~-l~va~~~-~ 270 (332)
...+|.+++++||| .||+++..+++|..++.+. ++. +.++.+..-.... ..+.+|+++|+|+ ||+++.. .
T Consensus 173 ~g~~p~~~~~~pdg~~lyv~~~~~~~v~v~~~~~~~~~~--~~~~~~~~~p~~~~~~~~~~~i~~~pdg~~lyv~~~~~~ 250 (330)
T PRK11028 173 EGAGPRHMVFHPNQQYAYCVNELNSSVDVWQLKDPHGEI--ECVQTLDMMPADFSDTRWAADIHITPDGRHLYACDRTAS 250 (330)
T ss_pred CCCCCceEEECCCCCEEEEEecCCCEEEEEEEeCCCCCE--EEEEEEecCCCcCCCCccceeEEECCCCCEEEEecCCCC
Confidence 23568899999999 9999999899997777663 321 1222222110111 1344788999976 7887532 2
Q ss_pred -eEEEE-cCCCceEEEEEeeecCCCcccceEEEE--ECCeEEEEEecCcccc
Q 020019 271 -ARLVE-SSDGWETAAVVAKFSGPVHRLATAATV--KDGRVYLNHMLGFGYP 318 (332)
Q Consensus 271 -~~~v~-~~dg~~~~~~~~~~~~~~~~~pt~va~--~~g~lyv~~~~g~~~~ 318 (332)
+.++. ..++ ...++...+.. ...|..+++ ++.+||++++....+.
T Consensus 251 ~I~v~~i~~~~-~~~~~~~~~~~--~~~p~~~~~~~dg~~l~va~~~~~~v~ 299 (330)
T PRK11028 251 LISVFSVSEDG-SVLSFEGHQPT--ETQPRGFNIDHSGKYLIAAGQKSHHIS 299 (330)
T ss_pred eEEEEEEeCCC-CeEEEeEEEec--cccCCceEECCCCCEEEEEEccCCcEE
Confidence 22222 2333 23345554432 246888888 5679999887665544
|
|
| >PRK11028 6-phosphogluconolactonase; Provisional | Back alignment and domain information |
|---|
Probab=99.54 E-value=8.1e-12 Score=116.24 Aligned_cols=231 Identities=13% Similarity=0.099 Sum_probs=137.6
Q ss_pred cccceEEcCCCCEEEEE-ecCCeEEEEECCCCCCCccceeeeEEecccCcCCCccceEEEeCCCCeEEEEEeCcCCCccc
Q 020019 46 FRECAKWDDSGRRFIVS-FLDGGIGQVAVPDDYPPGTVLEEVTLVKDLELTGNGSLGLVLDHPRNRLLVVAADVFGNKYS 124 (332)
Q Consensus 46 ~pegia~d~~g~~~~~~-~~~g~I~~vd~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~vd~~~g~l~v~~~~~~~~~~~ 124 (332)
.|.+++++++|+.+|+. ..++.|..++.+.... +.+ .....++. .+|.+++++++...+|+++.+ .+
T Consensus 81 ~p~~i~~~~~g~~l~v~~~~~~~v~v~~~~~~g~---~~~--~~~~~~~~--~~~~~~~~~p~g~~l~v~~~~-----~~ 148 (330)
T PRK11028 81 SPTHISTDHQGRFLFSASYNANCVSVSPLDKDGI---PVA--PIQIIEGL--EGCHSANIDPDNRTLWVPCLK-----ED 148 (330)
T ss_pred CceEEEECCCCCEEEEEEcCCCeEEEEEECCCCC---CCC--ceeeccCC--CcccEeEeCCCCCEEEEeeCC-----CC
Confidence 67899999999977766 5578888887653221 011 11111121 268899999975678888753 46
Q ss_pred eEEEEECCC-CcEEE----EEecCCCCCCCCCccceEECCCCc-EEEEeCCCCeEEEEcCC---CceEEEecCCCCCCcc
Q 020019 125 AVAAYDLST-WNRLF----LTQLSGPSDGKSCADDVTVDAEGN-AYVTDVTGSKIWKVGVK---GEFLSIISSPLFTPKE 195 (332)
Q Consensus 125 ~l~~~d~~~-g~~~~----~~~l~~~~~~~~~~ndiavd~dG~-lyvtd~~~~~I~~v~~~---g~~~~~~~~~~~~~p~ 195 (332)
.|.+||.++ +.+.. ...+ + ....|++++++|+|+ +|+++...+.|..++.+ |+......-..+ |.
T Consensus 149 ~v~v~d~~~~g~l~~~~~~~~~~--~--~g~~p~~~~~~pdg~~lyv~~~~~~~v~v~~~~~~~~~~~~~~~~~~~--p~ 222 (330)
T PRK11028 149 RIRLFTLSDDGHLVAQEPAEVTT--V--EGAGPRHMVFHPNQQYAYCVNELNSSVDVWQLKDPHGEIECVQTLDMM--PA 222 (330)
T ss_pred EEEEEEECCCCcccccCCCceec--C--CCCCCceEEECCCCCEEEEEecCCCEEEEEEEeCCCCCEEEEEEEecC--CC
Confidence 789999876 33321 1122 1 136789999999986 89999888888766643 343222111111 11
Q ss_pred cccCccccCeEEEccCc-eEEEEeCCCCeEEEEeCCCCCCccceeEEEEecCCCCCCCCeEEEeCCCe-EEEEeCCc--e
Q 020019 196 WYKNLVGLNGIVYHPDG-FLIVIHTFSGNLFKIDIVDGVGEGEEIKLIRVAGGPLSFGDGLELLSPTK-LVVAGNPS--A 271 (332)
Q Consensus 196 ~~~~~~~~nGi~~~~dG-~Lyva~~~~~~i~~id~~~~~~~~~~~~~v~~~g~~~~~pdGi~~~~dG~-l~va~~~~--~ 271 (332)
.......+.+|+++||| +||+++...+.|..|+.+.....-..+..+.. ...|.++++++||+ ||+++... .
T Consensus 223 ~~~~~~~~~~i~~~pdg~~lyv~~~~~~~I~v~~i~~~~~~~~~~~~~~~----~~~p~~~~~~~dg~~l~va~~~~~~v 298 (330)
T PRK11028 223 DFSDTRWAADIHITPDGRHLYACDRTASLISVFSVSEDGSVLSFEGHQPT----ETQPRGFNIDHSGKYLIAAGQKSHHI 298 (330)
T ss_pred cCCCCccceeEEECCCCCEEEEecCCCCeEEEEEEeCCCCeEEEeEEEec----cccCCceEECCCCCEEEEEEccCCcE
Confidence 00112245679999999 99999988888877766432100011222222 14789999999975 77776422 2
Q ss_pred EEEE--cCCCceEEEEEeeecCCCcccceEEEE
Q 020019 272 RLVE--SSDGWETAAVVAKFSGPVHRLATAATV 302 (332)
Q Consensus 272 ~~v~--~~dg~~~~~~~~~~~~~~~~~pt~va~ 302 (332)
.+.. ..+| .. +....+.. ..+|.++++
T Consensus 299 ~v~~~~~~~g-~l-~~~~~~~~--g~~P~~~~~ 327 (330)
T PRK11028 299 SVYEIDGETG-LL-TELGRYAV--GQGPMWVSV 327 (330)
T ss_pred EEEEEcCCCC-cE-EEcccccc--CCCceEEEE
Confidence 2222 2334 22 33344432 457888886
|
|
| >TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain | Back alignment and domain information |
|---|
Probab=99.52 E-value=2.2e-11 Score=115.14 Aligned_cols=246 Identities=15% Similarity=0.174 Sum_probs=147.4
Q ss_pred cccceEEcCCCCEEEEEe-----------cCC-eEEEEECCC--CCCCccceeeeEEecccCcCCCccceEEEeCCCCeE
Q 020019 46 FRECAKWDDSGRRFIVSF-----------LDG-GIGQVAVPD--DYPPGTVLEEVTLVKDLELTGNGSLGLVLDHPRNRL 111 (332)
Q Consensus 46 ~pegia~d~~g~~~~~~~-----------~~g-~I~~vd~~~--~~~~~~~~~~~~~~~~~~~~~~~~~gi~vd~~~g~l 111 (332)
.|.++++|++|++|++.. ..+ +|++++..+ ++. +..++.. .++ ..|.||++.++ | |
T Consensus 15 ~P~~ia~d~~G~l~V~e~~~y~~~~~~~~~~~~rI~~l~d~dgdG~~-----d~~~vfa-~~l--~~p~Gi~~~~~-G-l 84 (367)
T TIGR02604 15 NPIAVCFDERGRLWVAEGITYSRPAGRQGPLGDRILILEDADGDGKY-----DKSNVFA-EEL--SMVTGLAVAVG-G-V 84 (367)
T ss_pred CCceeeECCCCCEEEEeCCcCCCCCCCCCCCCCEEEEEEcCCCCCCc-----ceeEEee-cCC--CCccceeEecC-C-E
Confidence 899999999999999873 123 899997643 332 2122332 122 26899999985 7 9
Q ss_pred EEEEeCcCCCccceEEEE-ECCC-----CcEEEEEe-cCCC-CCCCCCccceEECCCCcEEEEeCC--------------
Q 020019 112 LVVAADVFGNKYSAVAAY-DLST-----WNRLFLTQ-LSGP-SDGKSCADDVTVDAEGNAYVTDVT-------------- 169 (332)
Q Consensus 112 ~v~~~~~~~~~~~~l~~~-d~~~-----g~~~~~~~-l~~~-~~~~~~~ndiavd~dG~lyvtd~~-------------- 169 (332)
||++. ..|++| |.+. ++.+..+. +... ......++++++++||+||+++..
T Consensus 85 yV~~~-------~~i~~~~d~~gdg~ad~~~~~l~~~~~~~~~~~~~~~~~l~~gpDG~LYv~~G~~~~~~~~~~~~~~~ 157 (367)
T TIGR02604 85 YVATP-------PDILFLRDKDGDDKADGEREVLLSGFGGQINNHHHSLNSLAWGPDGWLYFNHGNTLASKVTRPGTSDE 157 (367)
T ss_pred EEeCC-------CeEEEEeCCCCCCCCCCccEEEEEccCCCCCcccccccCceECCCCCEEEecccCCCceeccCCCccC
Confidence 99864 357777 3321 13222222 3211 001467999999999999997762
Q ss_pred -----CCeEEEEcCCCceEEEecCCCCCCcccccCccccCeEEEccCceEEEEeCCCCeEEEEeCCC-C-C-----Cccc
Q 020019 170 -----GSKIWKVGVKGEFLSIISSPLFTPKEWYKNLVGLNGIVYHPDGFLIVIHTFSGNLFKIDIVD-G-V-----GEGE 237 (332)
Q Consensus 170 -----~~~I~~v~~~g~~~~~~~~~~~~~p~~~~~~~~~nGi~~~~dG~Lyva~~~~~~i~~id~~~-~-~-----~~~~ 237 (332)
.+.|+|++++|.....+.. ++.+|+|++++++|.||+++...+...++.... + . ..+.
T Consensus 158 ~~~~~~g~i~r~~pdg~~~e~~a~----------G~rnp~Gl~~d~~G~l~~tdn~~~~~~~i~~~~~g~~~g~~~~~~~ 227 (367)
T TIGR02604 158 SRQGLGGGLFRYNPDGGKLRVVAH----------GFQNPYGHSVDSWGDVFFCDNDDPPLCRVTPVAEGGRNGYQSFNGR 227 (367)
T ss_pred cccccCceEEEEecCCCeEEEEec----------CcCCCccceECCCCCEEEEccCCCceeEEcccccccccCCCCCCCc
Confidence 2679999999765444322 345789999999999999998776666665321 0 0 0000
Q ss_pred ee--------EEE------------EecC---CCCCCCCeEEEeC--------CCeEEEEeCCceEE---EEcCCCceEE
Q 020019 238 EI--------KLI------------RVAG---GPLSFGDGLELLS--------PTKLVVAGNPSARL---VESSDGWETA 283 (332)
Q Consensus 238 ~~--------~~v------------~~~g---~~~~~pdGi~~~~--------dG~l~va~~~~~~~---v~~~dg~~~~ 283 (332)
.. ..+ ..+. .....|.|+++-. +|++++++....++ ...++|....
T Consensus 228 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~ap~G~~~y~g~~fp~~~~g~~fv~~~~~~~v~~~~l~~~g~~~~ 307 (367)
T TIGR02604 228 RYDHADRGADHEVPTGEWRQDDRGVETVGDVAGGGTAPCGIAFYRGDALPEEYRGLLLVGDAHGQLIVRYSLEPKGAGFK 307 (367)
T ss_pred ccccccccccccccccccccccccccccccccCCCccccEEEEeCCCcCCHHHCCCEEeeeccCCEEEEEEeecCCCccE
Confidence 00 000 0000 0123688998862 37899998544222 2234451111
Q ss_pred EE-EeeecC-CCcccceEEEE-ECCeEEEEEecCcccc
Q 020019 284 AV-VAKFSG-PVHRLATAATV-KDGRVYLNHMLGFGYP 318 (332)
Q Consensus 284 ~~-~~~~~~-~~~~~pt~va~-~~g~lyv~~~~g~~~~ 318 (332)
.. ...+.. .....|..+.+ .+|.|||+.+....+.
T Consensus 308 ~~~~~~l~~~~~~~rp~dv~~~pDG~Lyv~d~~~~~i~ 345 (367)
T TIGR02604 308 GERPEFLRSNDTWFRPVNVTVGPDGALYVSDWYDRGIE 345 (367)
T ss_pred eecCceEecCCCcccccceeECCCCCEEEEEeccCccc
Confidence 11 111221 12246888888 8999999998776655
|
All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs. |
| >COG3391 Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.44 E-value=6.6e-11 Score=112.32 Aligned_cols=194 Identities=21% Similarity=0.251 Sum_probs=140.4
Q ss_pred ccccceEEcCCCC-EEEEEecCCeEEEEECCCCCCCccceeeeEEecccCcCCCccceEEEeCCCCeEEEEEeCcCCCcc
Q 020019 45 FFRECAKWDDSGR-RFIVSFLDGGIGQVAVPDDYPPGTVLEEVTLVKDLELTGNGSLGLVLDHPRNRLLVVAADVFGNKY 123 (332)
Q Consensus 45 ~~pegia~d~~g~-~~~~~~~~g~I~~vd~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~vd~~~g~l~v~~~~~~~~~~ 123 (332)
.+|.++++.++++ .|+.....+.|.+++..+.+. .+ .. ..+..|.+++++++.+.+||++... ..
T Consensus 74 ~~p~~i~v~~~~~~vyv~~~~~~~v~vid~~~~~~----~~---~~----~vG~~P~~~~~~~~~~~vYV~n~~~---~~ 139 (381)
T COG3391 74 VYPAGVAVNPAGNKVYVTTGDSNTVSVIDTATNTV----LG---SI----PVGLGPVGLAVDPDGKYVYVANAGN---GN 139 (381)
T ss_pred ccccceeeCCCCCeEEEecCCCCeEEEEcCcccce----ee---Ee----eeccCCceEEECCCCCEEEEEeccc---CC
Confidence 6899999999998 555556679999999544331 11 22 1233799999999877999998742 13
Q ss_pred ceEEEEECCCCcEEEEEecCCCCCCCCCccceEECCCCc-EEEEeCCCCeEEEEcCCCceEEEecCCCCCCcccccCccc
Q 020019 124 SAVAAYDLSTWNRLFLTQLSGPSDGKSCADDVTVDAEGN-AYVTDVTGSKIWKVGVKGEFLSIISSPLFTPKEWYKNLVG 202 (332)
Q Consensus 124 ~~l~~~d~~~g~~~~~~~l~~~~~~~~~~ndiavd~dG~-lyvtd~~~~~I~~v~~~g~~~~~~~~~~~~~p~~~~~~~~ 202 (332)
+.+.++|.+++++...... ...|.+++++|+|+ +|+++...+.|..++..+..... ...... .....+
T Consensus 140 ~~vsvid~~t~~~~~~~~v------G~~P~~~a~~p~g~~vyv~~~~~~~v~vi~~~~~~v~~-~~~~~~----~~~~~~ 208 (381)
T COG3391 140 NTVSVIDAATNKVTATIPV------GNTPTGVAVDPDGNKVYVTNSDDNTVSVIDTSGNSVVR-GSVGSL----VGVGTG 208 (381)
T ss_pred ceEEEEeCCCCeEEEEEec------CCCcceEEECCCCCeEEEEecCCCeEEEEeCCCcceec-cccccc----cccCCC
Confidence 5788999999888765332 12568999999997 99999999999999987664432 221111 123467
Q ss_pred cCeEEEccCc-eEEEEeCCC--CeEEEEeCCCCCCccceeEEEEecCCCCCCCCeEEEeCCCe-EEEEeCC
Q 020019 203 LNGIVYHPDG-FLIVIHTFS--GNLFKIDIVDGVGEGEEIKLIRVAGGPLSFGDGLELLSPTK-LVVAGNP 269 (332)
Q Consensus 203 ~nGi~~~~dG-~Lyva~~~~--~~i~~id~~~~~~~~~~~~~v~~~g~~~~~pdGi~~~~dG~-l~va~~~ 269 (332)
|.+++++++| ++|+++..+ +++.+++..++ .+.........+ .|.+++++|+|+ +|+++..
T Consensus 209 P~~i~v~~~g~~~yV~~~~~~~~~v~~id~~~~-----~v~~~~~~~~~~-~~~~v~~~p~g~~~yv~~~~ 273 (381)
T COG3391 209 PAGIAVDPDGNRVYVANDGSGSNNVLKIDTATG-----NVTATDLPVGSG-APRGVAVDPAGKAAYVANSQ 273 (381)
T ss_pred CceEEECCCCCEEEEEeccCCCceEEEEeCCCc-----eEEEeccccccC-CCCceeECCCCCEEEEEecC
Confidence 8999999999 899999988 69999999977 333322221244 789999999976 6666554
|
|
| >COG3386 Gluconolactonase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.43 E-value=4.6e-11 Score=109.34 Aligned_cols=198 Identities=15% Similarity=0.135 Sum_probs=130.3
Q ss_pred EecCCccccceEEcCCCCEEEEEecCCeEEEEECCCCCCCccceeeeEEec-ccCcCCCccceEEEeCCCCeEEEEEeC-
Q 020019 40 YHSSSFFRECAKWDDSGRRFIVSFLDGGIGQVAVPDDYPPGTVLEEVTLVK-DLELTGNGSLGLVLDHPRNRLLVVAAD- 117 (332)
Q Consensus 40 ~~~~~~~pegia~d~~g~~~~~~~~~g~I~~vd~~~~~~~~~~~~~~~~~~-~~~~~~~~~~gi~vd~~~g~l~v~~~~- 117 (332)
+..++..+.+..++++|+++.+.. .+++++.+++.. .. .+.. .++...+.+|...++++ |++|+.++.
T Consensus 62 ~~~p~~~~~~~~~d~~g~Lv~~~~---g~~~~~~~~~~~----~t--~~~~~~~~~~~~r~ND~~v~pd-G~~wfgt~~~ 131 (307)
T COG3386 62 FPSPGGFSSGALIDAGGRLIACEH---GVRLLDPDTGGK----IT--LLAEPEDGLPLNRPNDGVVDPD-GRIWFGDMGY 131 (307)
T ss_pred EECCCCcccceeecCCCeEEEEcc---ccEEEeccCCce----eE--EeccccCCCCcCCCCceeEcCC-CCEEEeCCCc
Confidence 344455677788888876554332 244444444432 01 1221 12333357899999997 999999987
Q ss_pred --cCC---CccceEEEEECCCCcEEEEEecCCCCCCCCCccceEECCCC-cEEEEeCCCCeEEEEcCC---CceE---EE
Q 020019 118 --VFG---NKYSAVAAYDLSTWNRLFLTQLSGPSDGKSCADDVTVDAEG-NAYVTDVTGSKIWKVGVK---GEFL---SI 185 (332)
Q Consensus 118 --~~~---~~~~~l~~~d~~~g~~~~~~~l~~~~~~~~~~ndiavd~dG-~lyvtd~~~~~I~~v~~~---g~~~---~~ 185 (332)
... ...+.|+++|+. ++.+.... +....||+|+++||| .+|++|+..++|++++-+ +... .+
T Consensus 132 ~~~~~~~~~~~G~lyr~~p~-g~~~~l~~-----~~~~~~NGla~SpDg~tly~aDT~~~~i~r~~~d~~~g~~~~~~~~ 205 (307)
T COG3386 132 FDLGKSEERPTGSLYRVDPD-GGVVRLLD-----DDLTIPNGLAFSPDGKTLYVADTPANRIHRYDLDPATGPIGGRRGF 205 (307)
T ss_pred cccCccccCCcceEEEEcCC-CCEEEeec-----CcEEecCceEECCCCCEEEEEeCCCCeEEEEecCcccCccCCcceE
Confidence 221 345679999984 44443221 125789999999999 699999999999999765 2211 01
Q ss_pred ecCCCCCCcccccCccccCeEEEccCceEE-EEeCCCCeEEEEeCCCCCCccceeEEEEecCCCCCCCCeEEEeC-C-Ce
Q 020019 186 ISSPLFTPKEWYKNLVGLNGIVYHPDGFLI-VIHTFSGNLFKIDIVDGVGEGEEIKLIRVAGGPLSFGDGLELLS-P-TK 262 (332)
Q Consensus 186 ~~~~~~~~p~~~~~~~~~nGi~~~~dG~Ly-va~~~~~~i~~id~~~~~~~~~~~~~v~~~g~~~~~pdGi~~~~-d-G~ 262 (332)
... .. ....|+|+++|.+|.|| .+..+.++|.+++++ ++ .+..+.++- ..|..+++.. + ..
T Consensus 206 ~~~-~~-------~~G~PDG~~vDadG~lw~~a~~~g~~v~~~~pd-G~----l~~~i~lP~---~~~t~~~FgG~~~~~ 269 (307)
T COG3386 206 VDF-DE-------EPGLPDGMAVDADGNLWVAAVWGGGRVVRFNPD-GK----LLGEIKLPV---KRPTNPAFGGPDLNT 269 (307)
T ss_pred EEc-cC-------CCCCCCceEEeCCCCEEEecccCCceEEEECCC-Cc----EEEEEECCC---CCCccceEeCCCcCE
Confidence 100 00 12568999999999999 444455599999999 52 677777762 5678888864 3 77
Q ss_pred EEEEeCC
Q 020019 263 LVVAGNP 269 (332)
Q Consensus 263 l~va~~~ 269 (332)
|||+...
T Consensus 270 L~iTs~~ 276 (307)
T COG3386 270 LYITSAR 276 (307)
T ss_pred EEEEecC
Confidence 9999743
|
|
| >COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.43 E-value=2.6e-10 Score=102.84 Aligned_cols=240 Identities=16% Similarity=0.165 Sum_probs=146.0
Q ss_pred CccccceEEcCCCCEEEEE-ecCCeEEEEECCC-CCCCccceeeeEEecccCc-CC-----CccceEEEeCCCCeEEEEE
Q 020019 44 SFFRECAKWDDSGRRFIVS-FLDGGIGQVAVPD-DYPPGTVLEEVTLVKDLEL-TG-----NGSLGLVLDHPRNRLLVVA 115 (332)
Q Consensus 44 ~~~pegia~d~~g~~~~~~-~~~g~I~~vd~~~-~~~~~~~~~~~~~~~~~~~-~~-----~~~~gi~vd~~~g~l~v~~ 115 (332)
+..|--+++|++|+.+|+. ...|.|.+.-... +... .+. ....+++. +. -++.-..++|+...|++++
T Consensus 88 g~~p~yvsvd~~g~~vf~AnY~~g~v~v~p~~~dG~l~-~~v---~~~~h~g~~p~~rQ~~~h~H~a~~tP~~~~l~v~D 163 (346)
T COG2706 88 GSPPCYVSVDEDGRFVFVANYHSGSVSVYPLQADGSLQ-PVV---QVVKHTGSGPHERQESPHVHSANFTPDGRYLVVPD 163 (346)
T ss_pred CCCCeEEEECCCCCEEEEEEccCceEEEEEcccCCccc-cce---eeeecCCCCCCccccCCccceeeeCCCCCEEEEee
Confidence 4455779999999987776 5567665554432 3210 111 22222221 11 1356677899845778887
Q ss_pred eCcCCCccceEEEEECCCCcEEEEEecCCCCCCCCCccceEECCCCc-EEEEeCCCCeEEE--EcCC-CceEEEecCCCC
Q 020019 116 ADVFGNKYSAVAAYDLSTWNRLFLTQLSGPSDGKSCADDVTVDAEGN-AYVTDVTGSKIWK--VGVK-GEFLSIISSPLF 191 (332)
Q Consensus 116 ~~~~~~~~~~l~~~d~~~g~~~~~~~l~~~~~~~~~~ndiavd~dG~-lyvtd~~~~~I~~--v~~~-g~~~~~~~~~~~ 191 (332)
-+ ..++..|+++.|++....+.. ..+...|..|++.|+|. +|+....++.|.. +++. |++..+-....+
T Consensus 164 LG-----~Dri~~y~~~dg~L~~~~~~~--v~~G~GPRHi~FHpn~k~aY~v~EL~stV~v~~y~~~~g~~~~lQ~i~tl 236 (346)
T COG2706 164 LG-----TDRIFLYDLDDGKLTPADPAE--VKPGAGPRHIVFHPNGKYAYLVNELNSTVDVLEYNPAVGKFEELQTIDTL 236 (346)
T ss_pred cC-----CceEEEEEcccCccccccccc--cCCCCCcceEEEcCCCcEEEEEeccCCEEEEEEEcCCCceEEEeeeeccC
Confidence 63 568899999888776543321 12357899999999997 7999999887665 5553 554433111111
Q ss_pred CCcccccCccccCeEEEccCc-eEEEEeCCCCeE--EEEeCCCCCCccceeEEEEecCCCCCCCCeEEEeCCCeEEEEeC
Q 020019 192 TPKEWYKNLVGLNGIVYHPDG-FLIVIHTFSGNL--FKIDIVDGVGEGEEIKLIRVAGGPLSFGDGLELLSPTKLVVAGN 268 (332)
Q Consensus 192 ~~p~~~~~~~~~nGi~~~~dG-~Lyva~~~~~~i--~~id~~~~~~~~~~~~~v~~~g~~~~~pdGi~~~~dG~l~va~~ 268 (332)
|....+..+.-.|.+++|| .||++|...+.| ++|+..++ ....+.........|.+..+++.|++.++.+
T Consensus 237 --P~dF~g~~~~aaIhis~dGrFLYasNRg~dsI~~f~V~~~~g-----~L~~~~~~~teg~~PR~F~i~~~g~~Liaa~ 309 (346)
T COG2706 237 --PEDFTGTNWAAAIHISPDGRFLYASNRGHDSIAVFSVDPDGG-----KLELVGITPTEGQFPRDFNINPSGRFLIAAN 309 (346)
T ss_pred --ccccCCCCceeEEEECCCCCEEEEecCCCCeEEEEEEcCCCC-----EEEEEEEeccCCcCCccceeCCCCCEEEEEc
Confidence 2222244566789999999 999999988877 56676666 3333332112234699999999988666643
Q ss_pred C-c-eEEEEcCCCceEEEEEeeecCCCcccceEEEE
Q 020019 269 P-S-ARLVESSDGWETAAVVAKFSGPVHRLATAATV 302 (332)
Q Consensus 269 ~-~-~~~v~~~dg~~~~~~~~~~~~~~~~~pt~va~ 302 (332)
+ + ...++..|. +++.+...........|+|+.|
T Consensus 310 q~sd~i~vf~~d~-~TG~L~~~~~~~~~p~Pvcv~f 344 (346)
T COG2706 310 QKSDNITVFERDK-ETGRLTLLGRYAVVPEPVCVKF 344 (346)
T ss_pred cCCCcEEEEEEcC-CCceEEecccccCCCCcEEEEE
Confidence 3 2 233444444 4445544322223456888765
|
|
| >COG3391 Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.40 E-value=3e-10 Score=107.85 Aligned_cols=231 Identities=15% Similarity=0.181 Sum_probs=155.4
Q ss_pred CccccceEEcCCC-CEEEEEecCCeEEEEECCCCCCCccceeeeEEecccCcCCCccceEEEeCCCCeEEEEEeCcCCCc
Q 020019 44 SFFRECAKWDDSG-RRFIVSFLDGGIGQVAVPDDYPPGTVLEEVTLVKDLELTGNGSLGLVLDHPRNRLLVVAADVFGNK 122 (332)
Q Consensus 44 ~~~pegia~d~~g-~~~~~~~~~g~I~~vd~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~vd~~~g~l~v~~~~~~~~~ 122 (332)
+.+|.++++.++| .+|+.......+..++..... .+ .+. ..+. ..|.|++++++..++|+...+
T Consensus 30 ~~~~~~v~~~~~g~~~~v~~~~~~~~~~~~~~~n~-----~~--~~~-~~g~--~~p~~i~v~~~~~~vyv~~~~----- 94 (381)
T COG3391 30 GRGPGGVAVNPDGTQVYVANSGSNDVSVIDATSNT-----VT--QSL-SVGG--VYPAGVAVNPAGNKVYVTTGD----- 94 (381)
T ss_pred CCCCceeEEcCccCEEEEEeecCceeeecccccce-----ee--eec-cCCC--ccccceeeCCCCCeEEEecCC-----
Confidence 4489999999999 566666555577777765222 11 122 1121 478999999986779999864
Q ss_pred cceEEEEECCCCcEEEEEecCCCCCCCCCccceEECCCC-cEEEEeC--CCCeEEEEcCCC-ceEEEecCCCCCCccccc
Q 020019 123 YSAVAAYDLSTWNRLFLTQLSGPSDGKSCADDVTVDAEG-NAYVTDV--TGSKIWKVGVKG-EFLSIISSPLFTPKEWYK 198 (332)
Q Consensus 123 ~~~l~~~d~~~g~~~~~~~l~~~~~~~~~~ndiavd~dG-~lyvtd~--~~~~I~~v~~~g-~~~~~~~~~~~~~p~~~~ 198 (332)
...+.++|.++.+......+ ...|.+++++++| .+||++. .++.|.++|... +..... +..
T Consensus 95 ~~~v~vid~~~~~~~~~~~v------G~~P~~~~~~~~~~~vYV~n~~~~~~~vsvid~~t~~~~~~~--~vG------- 159 (381)
T COG3391 95 SNTVSVIDTATNTVLGSIPV------GLGPVGLAVDPDGKYVYVANAGNGNNTVSVIDAATNKVTATI--PVG------- 159 (381)
T ss_pred CCeEEEEcCcccceeeEeee------ccCCceEEECCCCCEEEEEecccCCceEEEEeCCCCeEEEEE--ecC-------
Confidence 45688999877666555544 2388999999997 6999999 579999999884 433321 111
Q ss_pred CccccCeEEEccCc-eEEEEeCCCCeEEEEeCCCCCCccceeEEEEecC---CCCCCCCeEEEeCCCe-EEEEeCCc--e
Q 020019 199 NLVGLNGIVYHPDG-FLIVIHTFSGNLFKIDIVDGVGEGEEIKLIRVAG---GPLSFGDGLELLSPTK-LVVAGNPS--A 271 (332)
Q Consensus 199 ~~~~~nGi~~~~dG-~Lyva~~~~~~i~~id~~~~~~~~~~~~~v~~~g---~~~~~pdGi~~~~dG~-l~va~~~~--~ 271 (332)
..|.|++++|+| .+|+++..+++|..|+.++. .+.+ ...+ .....|.+++++++|+ +||++... .
T Consensus 160 --~~P~~~a~~p~g~~vyv~~~~~~~v~vi~~~~~-----~v~~-~~~~~~~~~~~~P~~i~v~~~g~~~yV~~~~~~~~ 231 (381)
T COG3391 160 --NTPTGVAVDPDGNKVYVTNSDDNTVSVIDTSGN-----SVVR-GSVGSLVGVGTGPAGIAVDPDGNRVYVANDGSGSN 231 (381)
T ss_pred --CCcceEEECCCCCeEEEEecCCCeEEEEeCCCc-----ceec-cccccccccCCCCceEEECCCCCEEEEEeccCCCc
Confidence 245799999999 79999999999999997754 2222 2110 1346899999999977 99997543 1
Q ss_pred E--EEEcCCCceEEEEEee-ecCCCcccceEEEE--ECCeEEEEEecCccc
Q 020019 272 R--LVESSDGWETAAVVAK-FSGPVHRLATAATV--KDGRVYLNHMLGFGY 317 (332)
Q Consensus 272 ~--~v~~~dg~~~~~~~~~-~~~~~~~~pt~va~--~~g~lyv~~~~g~~~ 317 (332)
. .+....+ .+... .....+ +|..+++ .+..+|+.+..+..+
T Consensus 232 ~v~~id~~~~----~v~~~~~~~~~~-~~~~v~~~p~g~~~yv~~~~~~~V 277 (381)
T COG3391 232 NVLKIDTATG----NVTATDLPVGSG-APRGVAVDPAGKAAYVANSQGGTV 277 (381)
T ss_pred eEEEEeCCCc----eEEEeccccccC-CCCceeECCCCCEEEEEecCCCeE
Confidence 2 2233333 33332 223345 6777777 677788865554443
|
|
| >TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain | Back alignment and domain information |
|---|
Probab=99.34 E-value=2e-09 Score=100.06 Aligned_cols=249 Identities=14% Similarity=0.104 Sum_probs=140.0
Q ss_pred cCCccccceEEcCCCCEEEEE-e---------cCCeEEEEECCCCCCCccceeeeEEecccCc-CCCccceEEEeCCCCe
Q 020019 42 SSSFFRECAKWDDSGRRFIVS-F---------LDGGIGQVAVPDDYPPGTVLEEVTLVKDLEL-TGNGSLGLVLDHPRNR 110 (332)
Q Consensus 42 ~~~~~pegia~d~~g~~~~~~-~---------~~g~I~~vd~~~~~~~~~~~~~~~~~~~~~~-~~~~~~gi~vd~~~g~ 110 (332)
..|..|+++ +++||+.+|+. . .++.|..+|..+.+. ..+.....+|.+ .+..+..++++++...
T Consensus 44 ~~G~~P~~~-~spDg~~lyva~~~~~R~~~G~~~d~V~v~D~~t~~~----~~~i~~p~~p~~~~~~~~~~~~ls~dgk~ 118 (352)
T TIGR02658 44 DGGFLPNPV-VASDGSFFAHASTVYSRIARGKRTDYVEVIDPQTHLP----IADIELPEGPRFLVGTYPWMTSLTPDNKT 118 (352)
T ss_pred EccCCCcee-ECCCCCEEEEEeccccccccCCCCCEEEEEECccCcE----EeEEccCCCchhhccCccceEEECCCCCE
Confidence 457799996 99999876655 5 578899999988763 221122222332 1346779999998446
Q ss_pred EEEEEeCcCCCccceEEEEECCCCcEEEEEecCCCCCCCCCccceEECCCCcEEEEeCCCCeEEEEcCCCceEEEecCCC
Q 020019 111 LLVVAADVFGNKYSAVAAYDLSTWNRLFLTQLSGPSDGKSCADDVTVDAEGNAYVTDVTGSKIWKVGVKGEFLSIISSPL 190 (332)
Q Consensus 111 l~v~~~~~~~~~~~~l~~~d~~~g~~~~~~~l~~~~~~~~~~ndiavd~dG~lyvtd~~~~~I~~v~~~g~~~~~~~~~~ 190 (332)
|||++.+ ..+.+.++|.++++++..++.++. ..-....++++...+--+.-..+.++.+|+.. ....+.
T Consensus 119 l~V~n~~----p~~~V~VvD~~~~kvv~ei~vp~~------~~vy~t~e~~~~~~~~Dg~~~~v~~d~~g~~~-~~~~~v 187 (352)
T TIGR02658 119 LLFYQFS----PSPAVGVVDLEGKAFVRMMDVPDC------YHIFPTANDTFFMHCRDGSLAKVGYGTKGNPK-IKPTEV 187 (352)
T ss_pred EEEecCC----CCCEEEEEECCCCcEEEEEeCCCC------cEEEEecCCccEEEeecCceEEEEecCCCceE-Eeeeee
Confidence 8888753 356789999999999887776321 11122222222222211111222344455522 111111
Q ss_pred CCCcccccCccccCeEEEcc-Cc-eEEEEeCCCCeEEEEeCCCCCCcc-ceeEEEEecC-CCCCCCCe---EEEeCC-Ce
Q 020019 191 FTPKEWYKNLVGLNGIVYHP-DG-FLIVIHTFSGNLFKIDIVDGVGEG-EEIKLIRVAG-GPLSFGDG---LELLSP-TK 262 (332)
Q Consensus 191 ~~~p~~~~~~~~~nGi~~~~-dG-~Lyva~~~~~~i~~id~~~~~~~~-~~~~~v~~~g-~~~~~pdG---i~~~~d-G~ 262 (332)
|.. ...+-+..| .+.+ || ++|++.. |+|+.+|+.+..... .....+.... ++.-.|.| ++++++ ++
T Consensus 188 f~~-~~~~v~~rP---~~~~~dg~~~~vs~e--G~V~~id~~~~~~~~~~~~~~~~~~~~~~~wrP~g~q~ia~~~dg~~ 261 (352)
T TIGR02658 188 FHP-EDEYLINHP---AYSNKSGRLVWPTYT--GKIFQIDLSSGDAKFLPAIEAFTEAEKADGWRPGGWQQVAYHRARDR 261 (352)
T ss_pred ecC-CccccccCC---ceEcCCCcEEEEecC--CeEEEEecCCCcceecceeeeccccccccccCCCcceeEEEcCCCCE
Confidence 110 000112233 4455 77 8888766 899999976542210 1122121110 01124666 999987 77
Q ss_pred EEEEeCC-----------ceEEEEcCCCceEEEEEeeecCCCcccceEEEE--ECC-eEEEEEecCcccc
Q 020019 263 LVVAGNP-----------SARLVESSDGWETAAVVAKFSGPVHRLATAATV--KDG-RVYLNHMLGFGYP 318 (332)
Q Consensus 263 l~va~~~-----------~~~~v~~~dg~~~~~~~~~~~~~~~~~pt~va~--~~g-~lyv~~~~g~~~~ 318 (332)
+||+.++ ..+++....+ +++..+.. ...|.++++ +++ .||++++...+++
T Consensus 262 lyV~~~~~~~~thk~~~~~V~ViD~~t~----kvi~~i~v--G~~~~~iavS~Dgkp~lyvtn~~s~~Vs 325 (352)
T TIGR02658 262 IYLLADQRAKWTHKTASRFLFVVDAKTG----KRLRKIEL--GHEIDSINVSQDAKPLLYALSTGDKTLY 325 (352)
T ss_pred EEEEecCCccccccCCCCEEEEEECCCC----eEEEEEeC--CCceeeEEECCCCCeEEEEeCCCCCcEE
Confidence 9996421 2344455444 56666553 346788999 556 7899998877666
|
This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome. |
| >TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain | Back alignment and domain information |
|---|
Probab=99.30 E-value=2.7e-10 Score=107.69 Aligned_cols=162 Identities=18% Similarity=0.247 Sum_probs=106.6
Q ss_pred EecccCcCCCccceEEEeCCCCeEEEEEeCcCC------Ccc-ceEEEEECCC--CcEEEEEecCCCCCCCCCccceEEC
Q 020019 88 LVKDLELTGNGSLGLVLDHPRNRLLVVAADVFG------NKY-SAVAAYDLST--WNRLFLTQLSGPSDGKSCADDVTVD 158 (332)
Q Consensus 88 ~~~~~~~~~~~~~gi~vd~~~g~l~v~~~~~~~------~~~-~~l~~~d~~~--g~~~~~~~l~~~~~~~~~~ndiavd 158 (332)
+.+.|... .|.+|++|++ |+|||++..... .+. .+|.+++..+ |+......+ .++...|+++++.
T Consensus 7 ~A~~p~~~--~P~~ia~d~~-G~l~V~e~~~y~~~~~~~~~~~~rI~~l~d~dgdG~~d~~~vf---a~~l~~p~Gi~~~ 80 (367)
T TIGR02604 7 FAAEPLLR--NPIAVCFDER-GRLWVAEGITYSRPAGRQGPLGDRILILEDADGDGKYDKSNVF---AEELSMVTGLAVA 80 (367)
T ss_pred EECCCccC--CCceeeECCC-CCEEEEeCCcCCCCCCCCCCCCCEEEEEEcCCCCCCcceeEEe---ecCCCCccceeEe
Confidence 44445553 8999999996 999999853210 112 3788886543 443332333 2335689999999
Q ss_pred CCCcEEEEeCCCCeEEEE-cCCC------ceEEEecCCCCCCcccccCccccCeEEEccCceEEEEeCC-----------
Q 020019 159 AEGNAYVTDVTGSKIWKV-GVKG------EFLSIISSPLFTPKEWYKNLVGLNGIVYHPDGFLIVIHTF----------- 220 (332)
Q Consensus 159 ~dG~lyvtd~~~~~I~~v-~~~g------~~~~~~~~~~~~~p~~~~~~~~~nGi~~~~dG~Lyva~~~----------- 220 (332)
++| +||++ ...|+++ +.++ +...++. .+.... ....-.++++++++||+||++...
T Consensus 81 ~~G-lyV~~--~~~i~~~~d~~gdg~ad~~~~~l~~--~~~~~~-~~~~~~~~~l~~gpDG~LYv~~G~~~~~~~~~~~~ 154 (367)
T TIGR02604 81 VGG-VYVAT--PPDILFLRDKDGDDKADGEREVLLS--GFGGQI-NNHHHSLNSLAWGPDGWLYFNHGNTLASKVTRPGT 154 (367)
T ss_pred cCC-EEEeC--CCeEEEEeCCCCCCCCCCccEEEEE--ccCCCC-CcccccccCceECCCCCEEEecccCCCceeccCCC
Confidence 999 99997 4578887 4433 3223322 121100 001345899999999999998772
Q ss_pred --------CCeEEEEeCCCCCCccceeEEEEecCCCCCCCCeEEEeCCCeEEEEeCC
Q 020019 221 --------SGNLFKIDIVDGVGEGEEIKLIRVAGGPLSFGDGLELLSPTKLVVAGNP 269 (332)
Q Consensus 221 --------~~~i~~id~~~~~~~~~~~~~v~~~g~~~~~pdGi~~~~dG~l~va~~~ 269 (332)
.+.|+|++++++ ..+.+. ..+..|.|++++++|++|+++|.
T Consensus 155 ~~~~~~~~~g~i~r~~pdg~-----~~e~~a---~G~rnp~Gl~~d~~G~l~~tdn~ 203 (367)
T TIGR02604 155 SDESRQGLGGGLFRYNPDGG-----KLRVVA---HGFQNPYGHSVDSWGDVFFCDND 203 (367)
T ss_pred ccCcccccCceEEEEecCCC-----eEEEEe---cCcCCCccceECCCCCEEEEccC
Confidence 157999999866 344343 24678999999999999999864
|
All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs. |
| >TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein | Back alignment and domain information |
|---|
Probab=99.29 E-value=3e-08 Score=89.69 Aligned_cols=226 Identities=15% Similarity=0.108 Sum_probs=137.4
Q ss_pred cccceEEcCCCCEEE-EEecCCeEEEEECCCCCCCccceeeeEEecccCcCCCccceEEEeCCCCeEEEEEeCcCCCccc
Q 020019 46 FRECAKWDDSGRRFI-VSFLDGGIGQVAVPDDYPPGTVLEEVTLVKDLELTGNGSLGLVLDHPRNRLLVVAADVFGNKYS 124 (332)
Q Consensus 46 ~pegia~d~~g~~~~-~~~~~g~I~~vd~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~vd~~~g~l~v~~~~~~~~~~~ 124 (332)
.|.+++++++|+.+| +...++.|..++..+++. .. .+. . +..+..++++++.+.+|++... .+
T Consensus 32 ~~~~l~~~~dg~~l~~~~~~~~~v~~~d~~~~~~----~~--~~~-~----~~~~~~~~~~~~g~~l~~~~~~-----~~ 95 (300)
T TIGR03866 32 RPRGITLSKDGKLLYVCASDSDTIQVIDLATGEV----IG--TLP-S----GPDPELFALHPNGKILYIANED-----DN 95 (300)
T ss_pred CCCceEECCCCCEEEEEECCCCeEEEEECCCCcE----EE--ecc-C----CCCccEEEECCCCCEEEEEcCC-----CC
Confidence 578899999998654 446678999999876652 11 121 1 1245678899874557776542 35
Q ss_pred eEEEEECCCCcEEEEEecCCCCCCCCCccceEECCCCcEEEEeCC-CCeEEEEcCCC-ceEEEecCCCCCCcccccCccc
Q 020019 125 AVAAYDLSTWNRLFLTQLSGPSDGKSCADDVTVDAEGNAYVTDVT-GSKIWKVGVKG-EFLSIISSPLFTPKEWYKNLVG 202 (332)
Q Consensus 125 ~l~~~d~~~g~~~~~~~l~~~~~~~~~~ndiavd~dG~lyvtd~~-~~~I~~v~~~g-~~~~~~~~~~~~~p~~~~~~~~ 202 (332)
.+..||+++++.....+. ...+++++++|+|.++++... ...++.++.+. +...... ....
T Consensus 96 ~l~~~d~~~~~~~~~~~~------~~~~~~~~~~~dg~~l~~~~~~~~~~~~~d~~~~~~~~~~~-----------~~~~ 158 (300)
T TIGR03866 96 LVTVIDIETRKVLAEIPV------GVEPEGMAVSPDGKIVVNTSETTNMAHFIDTKTYEIVDNVL-----------VDQR 158 (300)
T ss_pred eEEEEECCCCeEEeEeeC------CCCcceEEECCCCCEEEEEecCCCeEEEEeCCCCeEEEEEE-----------cCCC
Confidence 689999988665443332 234678999999986655443 34566667653 3222111 0124
Q ss_pred cCeEEEccCc-eEEEEeCCCCeEEEEeCCCCCCccceeEEEEec--CC--CCCCCCeEEEeCCCeE-EEEeC--CceEEE
Q 020019 203 LNGIVYHPDG-FLIVIHTFSGNLFKIDIVDGVGEGEEIKLIRVA--GG--PLSFGDGLELLSPTKL-VVAGN--PSARLV 274 (332)
Q Consensus 203 ~nGi~~~~dG-~Lyva~~~~~~i~~id~~~~~~~~~~~~~v~~~--g~--~~~~pdGi~~~~dG~l-~va~~--~~~~~v 274 (332)
+..+++++|| .||++....++|+.+++.+++ .+..+... +. ....|.+++++++|+. |++.. ....++
T Consensus 159 ~~~~~~s~dg~~l~~~~~~~~~v~i~d~~~~~----~~~~~~~~~~~~~~~~~~~~~i~~s~dg~~~~~~~~~~~~i~v~ 234 (300)
T TIGR03866 159 PRFAEFTADGKELWVSSEIGGTVSVIDVATRK----VIKKITFEIPGVHPEAVQPVGIKLTKDGKTAFVALGPANRVAVV 234 (300)
T ss_pred ccEEEECCCCCEEEEEcCCCCEEEEEEcCcce----eeeeeeecccccccccCCccceEECCCCCEEEEEcCCCCeEEEE
Confidence 5789999999 788877677899999998763 33333321 10 1124678999999874 66642 223333
Q ss_pred EcCCCceEEEEEeeecCCCcccceEEEE--ECCeEEEEEecC
Q 020019 275 ESSDGWETAAVVAKFSGPVHRLATAATV--KDGRVYLNHMLG 314 (332)
Q Consensus 275 ~~~dg~~~~~~~~~~~~~~~~~pt~va~--~~g~lyv~~~~g 314 (332)
...++ ++...+.. ...+.++++ .+..||+++...
T Consensus 235 d~~~~----~~~~~~~~--~~~~~~~~~~~~g~~l~~~~~~~ 270 (300)
T TIGR03866 235 DAKTY----EVLDYLLV--GQRVWQLAFTPDEKYLLTTNGVS 270 (300)
T ss_pred ECCCC----cEEEEEEe--CCCcceEEECCCCCEEEEEcCCC
Confidence 44444 23332221 234677888 455677765433
|
Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol. |
| >COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.26 E-value=1.5e-08 Score=91.49 Aligned_cols=245 Identities=15% Similarity=0.225 Sum_probs=147.4
Q ss_pred cccceEEcCCCCEEEEE-ec--CCeE--EEEECCCCCCCccceeeeEEecccCcCCCccceEEEeCCCCe-EEEEEeCcC
Q 020019 46 FRECAKWDDSGRRFIVS-FL--DGGI--GQVAVPDDYPPGTVLEEVTLVKDLELTGNGSLGLVLDHPRNR-LLVVAADVF 119 (332)
Q Consensus 46 ~pegia~d~~g~~~~~~-~~--~g~I--~~vd~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~vd~~~g~-l~v~~~~~~ 119 (332)
.|.=++++++++.+|+. -. .|.| ++||+.+|.. +++.....++.+|.-+.+|++ |+ ||++.-.
T Consensus 41 nptyl~~~~~~~~LY~v~~~~~~ggvaay~iD~~~G~L--------t~ln~~~~~g~~p~yvsvd~~-g~~vf~AnY~-- 109 (346)
T COG2706 41 NPTYLAVNPDQRHLYVVNEPGEEGGVAAYRIDPDDGRL--------TFLNRQTLPGSPPCYVSVDED-GRFVFVANYH-- 109 (346)
T ss_pred CCceEEECCCCCEEEEEEecCCcCcEEEEEEcCCCCeE--------EEeeccccCCCCCeEEEECCC-CCEEEEEEcc--
Confidence 56669999999766665 32 4555 6777766763 455443334557788999997 65 5555432
Q ss_pred CCccceEEEEECCC-CcEEEE---EecCCC--C--CCCCCccceEECCCCc-EEEEeCCCCeEEEEcCC-CceEEEecCC
Q 020019 120 GNKYSAVAAYDLST-WNRLFL---TQLSGP--S--DGKSCADDVTVDAEGN-AYVTDVTGSKIWKVGVK-GEFLSIISSP 189 (332)
Q Consensus 120 ~~~~~~l~~~d~~~-g~~~~~---~~l~~~--~--~~~~~~ndiavd~dG~-lyvtd~~~~~I~~v~~~-g~~~~~~~~~ 189 (332)
.+.+.++..+. |.+... ....++ . +..+.++-.-++|+|+ ++++|-+..+|+.++.+ |++...-..
T Consensus 110 ---~g~v~v~p~~~dG~l~~~v~~~~h~g~~p~~rQ~~~h~H~a~~tP~~~~l~v~DLG~Dri~~y~~~dg~L~~~~~~- 185 (346)
T COG2706 110 ---SGSVSVYPLQADGSLQPVVQVVKHTGSGPHERQESPHVHSANFTPDGRYLVVPDLGTDRIFLYDLDDGKLTPADPA- 185 (346)
T ss_pred ---CceEEEEEcccCCccccceeeeecCCCCCCccccCCccceeeeCCCCCEEEEeecCCceEEEEEcccCcccccccc-
Confidence 45677887754 544332 222221 1 1234578888999996 78889999998887754 665432211
Q ss_pred CCCCcccccCccccCeEEEccCc-eEEEEeCCCCeEEEEeCCC--CCCccceeEEEE-ecCCCC---CCCCeEEEeCCCe
Q 020019 190 LFTPKEWYKNLVGLNGIVYHPDG-FLIVIHTFSGNLFKIDIVD--GVGEGEEIKLIR-VAGGPL---SFGDGLELLSPTK 262 (332)
Q Consensus 190 ~~~~p~~~~~~~~~nGi~~~~dG-~Lyva~~~~~~i~~id~~~--~~~~~~~~~~v~-~~g~~~---~~pdGi~~~~dG~ 262 (332)
.+ . ...||.-|+|+|+| ..|+.+..+++|..+..+. ++. +.++.+. ++ +.+ .....|.+++||+
T Consensus 186 ~v-~-----~G~GPRHi~FHpn~k~aY~v~EL~stV~v~~y~~~~g~~--~~lQ~i~tlP-~dF~g~~~~aaIhis~dGr 256 (346)
T COG2706 186 EV-K-----PGAGPRHIVFHPNGKYAYLVNELNSTVDVLEYNPAVGKF--EELQTIDTLP-EDFTGTNWAAAIHISPDGR 256 (346)
T ss_pred cc-C-----CCCCcceEEEcCCCcEEEEEeccCCEEEEEEEcCCCceE--EEeeeeccCc-cccCCCCceeEEEECCCCC
Confidence 11 2 34789999999999 9999999999986555553 422 1233332 22 222 2345677889998
Q ss_pred -EEEEeCC--ceEE-EEcCCCceEEEEEeeecCCCcccceEEEE-ECC-eEEEEEecCcc
Q 020019 263 -LVVAGNP--SARL-VESSDGWETAAVVAKFSGPVHRLATAATV-KDG-RVYLNHMLGFG 316 (332)
Q Consensus 263 -l~va~~~--~~~~-v~~~dg~~~~~~~~~~~~~~~~~pt~va~-~~g-~lyv~~~~g~~ 316 (332)
||++|.. ++.. ...+++-+. ++.+..+. ...+|-...+ .++ -|++++.-+..
T Consensus 257 FLYasNRg~dsI~~f~V~~~~g~L-~~~~~~~t-eg~~PR~F~i~~~g~~Liaa~q~sd~ 314 (346)
T COG2706 257 FLYASNRGHDSIAVFSVDPDGGKL-ELVGITPT-EGQFPRDFNINPSGRFLIAANQKSDN 314 (346)
T ss_pred EEEEecCCCCeEEEEEEcCCCCEE-EEEEEecc-CCcCCccceeCCCCCEEEEEccCCCc
Confidence 5666532 2332 234554233 33333332 3567888888 444 44455554443
|
|
| >TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein | Back alignment and domain information |
|---|
Probab=99.26 E-value=1.9e-08 Score=90.98 Aligned_cols=218 Identities=13% Similarity=0.110 Sum_probs=134.9
Q ss_pred cccceEEcCCCCEEEEE-ecCCeEEEEECCCCCCCccceeeeEEecccCcCCCccceEEEeCCCCeEEEEEeCcCCCccc
Q 020019 46 FRECAKWDDSGRRFIVS-FLDGGIGQVAVPDDYPPGTVLEEVTLVKDLELTGNGSLGLVLDHPRNRLLVVAADVFGNKYS 124 (332)
Q Consensus 46 ~pegia~d~~g~~~~~~-~~~g~I~~vd~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~vd~~~g~l~v~~~~~~~~~~~ 124 (332)
.+..++++++|+.+++. ..+++|..+|..+.+. . .... . +..+.+++++++ |.++++... ...
T Consensus 74 ~~~~~~~~~~g~~l~~~~~~~~~l~~~d~~~~~~----~---~~~~--~--~~~~~~~~~~~d-g~~l~~~~~----~~~ 137 (300)
T TIGR03866 74 DPELFALHPNGKILYIANEDDNLVTVIDIETRKV----L---AEIP--V--GVEPEGMAVSPD-GKIVVNTSE----TTN 137 (300)
T ss_pred CccEEEECCCCCEEEEEcCCCCeEEEEECCCCeE----E---eEee--C--CCCcceEEECCC-CCEEEEEec----CCC
Confidence 46778999999866655 5578999999875541 1 1111 1 124678999997 665555432 123
Q ss_pred eEEEEECCCCcEEEEEecCCCCCCCCCccceEECCCCc-EEEEeCCCCeEEEEcCC-CceEEEecCCCCCCcccccCccc
Q 020019 125 AVAAYDLSTWNRLFLTQLSGPSDGKSCADDVTVDAEGN-AYVTDVTGSKIWKVGVK-GEFLSIISSPLFTPKEWYKNLVG 202 (332)
Q Consensus 125 ~l~~~d~~~g~~~~~~~l~~~~~~~~~~ndiavd~dG~-lyvtd~~~~~I~~v~~~-g~~~~~~~~~~~~~p~~~~~~~~ 202 (332)
.+..||.++++....... ...++.++++++|. +|++....+.|+.++.. ++....+... .+...+....
T Consensus 138 ~~~~~d~~~~~~~~~~~~------~~~~~~~~~s~dg~~l~~~~~~~~~v~i~d~~~~~~~~~~~~~---~~~~~~~~~~ 208 (300)
T TIGR03866 138 MAHFIDTKTYEIVDNVLV------DQRPRFAEFTADGKELWVSSEIGGTVSVIDVATRKVIKKITFE---IPGVHPEAVQ 208 (300)
T ss_pred eEEEEeCCCCeEEEEEEc------CCCccEEEECCCCCEEEEEcCCCCEEEEEEcCcceeeeeeeec---ccccccccCC
Confidence 456689887766543322 23567799999986 66776667889999876 3432222111 0100012235
Q ss_pred cCeEEEccCc-eEEEEeCCCCeEEEEeCCCCCCccceeEEEEecCCCCCCCCeEEEeCCCeE-EEEeC--CceEEEEcCC
Q 020019 203 LNGIVYHPDG-FLIVIHTFSGNLFKIDIVDGVGEGEEIKLIRVAGGPLSFGDGLELLSPTKL-VVAGN--PSARLVESSD 278 (332)
Q Consensus 203 ~nGi~~~~dG-~Lyva~~~~~~i~~id~~~~~~~~~~~~~v~~~g~~~~~pdGi~~~~dG~l-~va~~--~~~~~v~~~d 278 (332)
+.++++++|| .+|++...+++|..+|..+++ .+..+... ..+.++++.++|+. |+++. +...+....+
T Consensus 209 ~~~i~~s~dg~~~~~~~~~~~~i~v~d~~~~~----~~~~~~~~----~~~~~~~~~~~g~~l~~~~~~~~~i~v~d~~~ 280 (300)
T TIGR03866 209 PVGIKLTKDGKTAFVALGPANRVAVVDAKTYE----VLDYLLVG----QRVWQLAFTPDEKYLLTTNGVSNDVSVIDVAA 280 (300)
T ss_pred ccceEECCCCCEEEEEcCCCCeEEEEECCCCc----EEEEEEeC----CCcceEEECCCCCEEEEEcCCCCeEEEEECCC
Confidence 6789999999 889988778889999988662 33333322 35789999999875 45432 3344445555
Q ss_pred CceEEEEEeeecCCCcccceEEEE
Q 020019 279 GWETAAVVAKFSGPVHRLATAATV 302 (332)
Q Consensus 279 g~~~~~~~~~~~~~~~~~pt~va~ 302 (332)
+ +++..+.. ...|.++++
T Consensus 281 ~----~~~~~~~~--~~~~~~~~~ 298 (300)
T TIGR03866 281 L----KVIKSIKV--GRLPWGVVV 298 (300)
T ss_pred C----cEEEEEEc--ccccceeEe
Confidence 5 34444432 256777775
|
Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol. |
| >PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases | Back alignment and domain information |
|---|
Probab=99.24 E-value=2.7e-09 Score=99.40 Aligned_cols=165 Identities=19% Similarity=0.274 Sum_probs=93.1
Q ss_pred cccceEEcCCCCEEEEEecCCeEEEEECCCCCCCccceeeeEEecccCc--C-CCccceEEEeCC---CCeEEEEEeCc-
Q 020019 46 FRECAKWDDSGRRFIVSFLDGGIGQVAVPDDYPPGTVLEEVTLVKDLEL--T-GNGSLGLVLDHP---RNRLLVVAADV- 118 (332)
Q Consensus 46 ~pegia~d~~g~~~~~~~~~g~I~~vd~~~~~~~~~~~~~~~~~~~~~~--~-~~~~~gi~vd~~---~g~l~v~~~~~- 118 (332)
.|-++++.|+|++|++.. .|+|++++.++... . .+...+.. . ..+..||+++|+ ++.||++....
T Consensus 3 ~P~~~a~~pdG~l~v~e~-~G~i~~~~~~g~~~-----~--~v~~~~~v~~~~~~gllgia~~p~f~~n~~lYv~~t~~~ 74 (331)
T PF07995_consen 3 NPRSMAFLPDGRLLVAER-SGRIWVVDKDGSLK-----T--PVADLPEVFADGERGLLGIAFHPDFASNGYLYVYYTNAD 74 (331)
T ss_dssp SEEEEEEETTSCEEEEET-TTEEEEEETTTEEC-----E--EEEE-TTTBTSTTBSEEEEEE-TTCCCC-EEEEEEEEE-
T ss_pred CceEEEEeCCCcEEEEeC-CceEEEEeCCCcCc-----c--eecccccccccccCCcccceeccccCCCCEEEEEEEccc
Confidence 688999999999988766 89999999443221 1 12111111 1 137899999993 58999997631
Q ss_pred --CCCccceEEEEECCCC--cEE---EE-EecCCCCCCCCCccceEECCCCcEEEEe-------------CCCCeEEEEc
Q 020019 119 --FGNKYSAVAAYDLSTW--NRL---FL-TQLSGPSDGKSCADDVTVDAEGNAYVTD-------------VTGSKIWKVG 177 (332)
Q Consensus 119 --~~~~~~~l~~~d~~~g--~~~---~~-~~l~~~~~~~~~~ndiavd~dG~lyvtd-------------~~~~~I~~v~ 177 (332)
......+|.+|....+ ... .. ..++......+....|+++|||.|||+- ...+.|+|++
T Consensus 75 ~~~~~~~~~v~r~~~~~~~~~~~~~~~l~~~~p~~~~~~H~g~~l~fgpDG~LYvs~G~~~~~~~~~~~~~~~G~ilri~ 154 (331)
T PF07995_consen 75 EDGGDNDNRVVRFTLSDGDGDLSSEEVLVTGLPDTSSGNHNGGGLAFGPDGKLYVSVGDGGNDDNAQDPNSLRGKILRID 154 (331)
T ss_dssp TSSSSEEEEEEEEEEETTSCEEEEEEEEEEEEES-CSSSS-EEEEEE-TTSEEEEEEB-TTTGGGGCSTTSSTTEEEEEE
T ss_pred CCCCCcceeeEEEeccCCccccccceEEEEEeCCCCCCCCCCccccCCCCCcEEEEeCCCCCcccccccccccceEEEec
Confidence 1112346777765443 211 11 1232211234677889999999999973 2368999999
Q ss_pred CCCceEEEecCCCC-----CCcccccCccccCeEEEccC-ceEEEEeCC
Q 020019 178 VKGEFLSIISSPLF-----TPKEWYKNLVGLNGIVYHPD-GFLIVIHTF 220 (332)
Q Consensus 178 ~~g~~~~~~~~~~~-----~~p~~~~~~~~~nGi~~~~d-G~Lyva~~~ 220 (332)
++|+... .++.. .......++-+|.|++|+|. |.||+++.+
T Consensus 155 ~dG~~p~--dnP~~~~~~~~~~i~A~GlRN~~~~~~d~~tg~l~~~d~G 201 (331)
T PF07995_consen 155 PDGSIPA--DNPFVGDDGADSEIYAYGLRNPFGLAFDPNTGRLWAADNG 201 (331)
T ss_dssp TTSSB-T--TSTTTTSTTSTTTEEEE--SEEEEEEEETTTTEEEEEEE-
T ss_pred ccCcCCC--CCccccCCCceEEEEEeCCCccccEEEECCCCcEEEEccC
Confidence 9987321 11111 01112234455666666666 566666654
|
The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B .... |
| >PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2 | Back alignment and domain information |
|---|
Probab=99.21 E-value=8.4e-09 Score=91.17 Aligned_cols=192 Identities=16% Similarity=0.213 Sum_probs=123.2
Q ss_pred cCCccccceEEcCCCCEEEEE-ec-CCeEEEEECCCCCCCccceeeeEEecccCcCCCccceEEEeCCCCeEEEEEeCcC
Q 020019 42 SSSFFRECAKWDDSGRRFIVS-FL-DGGIGQVAVPDDYPPGTVLEEVTLVKDLELTGNGSLGLVLDHPRNRLLVVAADVF 119 (332)
Q Consensus 42 ~~~~~pegia~d~~g~~~~~~-~~-~g~I~~vd~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~vd~~~g~l~v~~~~~~ 119 (332)
.+..+.+|+.+..+|.+|-++ .. ..+|.++++.+++ +.++ .-+ ++.. -..||++-. ++||....
T Consensus 42 d~~aFTQGL~~~~~g~LyESTG~yG~S~l~~~d~~tg~----~~~~-~~l-~~~~---FgEGit~~~--d~l~qLTW--- 107 (264)
T PF05096_consen 42 DPTAFTQGLEFLDDGTLYESTGLYGQSSLRKVDLETGK----VLQS-VPL-PPRY---FGEGITILG--DKLYQLTW--- 107 (264)
T ss_dssp -TT-EEEEEEEEETTEEEEEECSTTEEEEEEEETTTSS----EEEE-EE--TTT-----EEEEEEET--TEEEEEES---
T ss_pred CCcccCccEEecCCCEEEEeCCCCCcEEEEEEECCCCc----EEEE-EEC-Cccc---cceeEEEEC--CEEEEEEe---
Confidence 445588999998888888877 33 3479999999887 2221 111 1222 246899885 79999986
Q ss_pred CCccceEEEEECCCCcEEEEEecCCCCCCCCCccceEECCCCcEEEEeCCCCeEEEEcCCC-ceEEEecCCCCCCccccc
Q 020019 120 GNKYSAVAAYDLSTWNRLFLTQLSGPSDGKSCADDVTVDAEGNAYVTDVTGSKIWKVGVKG-EFLSIISSPLFTPKEWYK 198 (332)
Q Consensus 120 ~~~~~~l~~~d~~~g~~~~~~~l~~~~~~~~~~ndiavd~dG~lyvtd~~~~~I~~v~~~g-~~~~~~~~~~~~~p~~~~ 198 (332)
+.+..++||.++-+....+..++ + .=|++-|.+ .+|++|. ...|+.+||+. +....+....-..|
T Consensus 108 --k~~~~f~yd~~tl~~~~~~~y~~--E----GWGLt~dg~-~Li~SDG-S~~L~~~dP~~f~~~~~i~V~~~g~p---- 173 (264)
T PF05096_consen 108 --KEGTGFVYDPNTLKKIGTFPYPG--E----GWGLTSDGK-RLIMSDG-SSRLYFLDPETFKEVRTIQVTDNGRP---- 173 (264)
T ss_dssp --SSSEEEEEETTTTEEEEEEE-SS--S------EEEECSS-CEEEE-S-SSEEEEE-TTT-SEEEEEE-EETTEE----
T ss_pred --cCCeEEEEccccceEEEEEecCC--c----ceEEEcCCC-EEEEECC-ccceEEECCcccceEEEEEEEECCEE----
Confidence 35678899999888777666642 2 235775533 5899985 78999999873 22222211111111
Q ss_pred CccccCeEEEccCceEEEEeCCCCeEEEEeCCCCCCccceeEEEEecC---------CC---CCCCCeEEEeCC-CeEEE
Q 020019 199 NLVGLNGIVYHPDGFLIVIHTFSGNLFKIDIVDGVGEGEEIKLIRVAG---------GP---LSFGDGLELLSP-TKLVV 265 (332)
Q Consensus 199 ~~~~~nGi~~~~dG~Lyva~~~~~~i~~id~~~~~~~~~~~~~v~~~g---------~~---~~~pdGi~~~~d-G~l~v 265 (332)
....|=+.+- +|.||..-+.+.+|.+||+.+|. .+..+.+.+ .. .....|||.|++ +++||
T Consensus 174 -v~~LNELE~i-~G~IyANVW~td~I~~Idp~tG~----V~~~iDls~L~~~~~~~~~~~~~~dVLNGIAyd~~~~~l~v 247 (264)
T PF05096_consen 174 -VSNLNELEYI-NGKIYANVWQTDRIVRIDPETGK----VVGWIDLSGLRPEVGRDKSRQPDDDVLNGIAYDPETDRLFV 247 (264)
T ss_dssp ----EEEEEEE-TTEEEEEETTSSEEEEEETTT-B----EEEEEE-HHHHHHHTSTTST--TTS-EEEEEEETTTTEEEE
T ss_pred -CCCcEeEEEE-cCEEEEEeCCCCeEEEEeCCCCe----EEEEEEhhHhhhcccccccccccCCeeEeEeEeCCCCEEEE
Confidence 2457888886 88999999999999999999983 455565421 01 245789999976 88999
Q ss_pred Ee
Q 020019 266 AG 267 (332)
Q Consensus 266 a~ 267 (332)
++
T Consensus 248 TG 249 (264)
T PF05096_consen 248 TG 249 (264)
T ss_dssp EE
T ss_pred Ee
Confidence 97
|
3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X. |
| >PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators [] | Back alignment and domain information |
|---|
Probab=99.07 E-value=3.7e-08 Score=87.46 Aligned_cols=195 Identities=17% Similarity=0.199 Sum_probs=111.8
Q ss_pred ccceEEEeCCCCeEEEEEeCcCCCccceEEEEECCCCcEEEEEecCCCCCCCCCccceEECCCCcEEEEeCCCCeEEEEc
Q 020019 98 GSLGLVLDHPRNRLLVVAADVFGNKYSAVAAYDLSTWNRLFLTQLSGPSDGKSCADDVTVDAEGNAYVTDVTGSKIWKVG 177 (332)
Q Consensus 98 ~~~gi~vd~~~g~l~v~~~~~~~~~~~~l~~~d~~~g~~~~~~~l~~~~~~~~~~ndiavd~dG~lyvtd~~~~~I~~v~ 177 (332)
.+.||++++++++||++... .+.|+.++.+ |++...+.+.+ ..-+-||+.-.+|.+.+++...+.++.++
T Consensus 23 e~SGLTy~pd~~tLfaV~d~-----~~~i~els~~-G~vlr~i~l~g----~~D~EgI~y~g~~~~vl~~Er~~~L~~~~ 92 (248)
T PF06977_consen 23 ELSGLTYNPDTGTLFAVQDE-----PGEIYELSLD-GKVLRRIPLDG----FGDYEGITYLGNGRYVLSEERDQRLYIFT 92 (248)
T ss_dssp -EEEEEEETTTTEEEEEETT-----TTEEEEEETT---EEEEEE-SS-----SSEEEEEE-STTEEEEEETTTTEEEEEE
T ss_pred CccccEEcCCCCeEEEEECC-----CCEEEEEcCC-CCEEEEEeCCC----CCCceeEEEECCCEEEEEEcCCCcEEEEE
Confidence 47899999988999988763 5678999975 88888888742 34577899988888888888888888776
Q ss_pred C--CCceEEEec--CCCCCCcccccCccccCeEEEccCc-eEEEEeCCCC-eEEEEeCCCCCCccceeEEEE---ec--C
Q 020019 178 V--KGEFLSIIS--SPLFTPKEWYKNLVGLNGIVYHPDG-FLIVIHTFSG-NLFKIDIVDGVGEGEEIKLIR---VA--G 246 (332)
Q Consensus 178 ~--~g~~~~~~~--~~~~~~p~~~~~~~~~nGi~~~~dG-~Lyva~~~~~-~i~~id~~~~~~~~~~~~~v~---~~--g 246 (332)
. +++...... .-.+..+ ...-.+.-|||+++.+ +||++....- +||.++..... ....... .. .
T Consensus 93 ~~~~~~~~~~~~~~~~~l~~~--~~~N~G~EGla~D~~~~~L~v~kE~~P~~l~~~~~~~~~---~~~~~~~~~~~~~~~ 167 (248)
T PF06977_consen 93 IDDDTTSLDRADVQKISLGFP--NKGNKGFEGLAYDPKTNRLFVAKERKPKRLYEVNGFPGG---FDLFVSDDQDLDDDK 167 (248)
T ss_dssp E----TT--EEEEEEEE---S-----SS--EEEEEETTTTEEEEEEESSSEEEEEEESTT-S---S--EEEE-HHHH-HT
T ss_pred EeccccccchhhceEEecccc--cCCCcceEEEEEcCCCCEEEEEeCCCChhhEEEccccCc---cceeecccccccccc
Confidence 5 332211100 0000000 0123456799999987 9998876543 68888872211 0121111 11 1
Q ss_pred CCCCCCCeEEEeCC-CeEEEEeCCceEEEE-cCCCceEEEEEeeec--C------CCcccceEEEE-ECCeEEEEE
Q 020019 247 GPLSFGDGLELLSP-TKLVVAGNPSARLVE-SSDGWETAAVVAKFS--G------PVHRLATAATV-KDGRVYLNH 311 (332)
Q Consensus 247 ~~~~~pdGi~~~~d-G~l~va~~~~~~~v~-~~dg~~~~~~~~~~~--~------~~~~~pt~va~-~~g~lyv~~ 311 (332)
..+..|.++++++. |+||+-...+.+++. ..+| + +...+. . ..+.+|.++|+ .+|+|||.+
T Consensus 168 ~~~~d~S~l~~~p~t~~lliLS~es~~l~~~d~~G-~---~~~~~~L~~g~~gl~~~~~QpEGIa~d~~G~LYIvs 239 (248)
T PF06977_consen 168 LFVRDLSGLSYDPRTGHLLILSDESRLLLELDRQG-R---VVSSLSLDRGFHGLSKDIPQPEGIAFDPDGNLYIVS 239 (248)
T ss_dssp --SS---EEEEETTTTEEEEEETTTTEEEEE-TT------EEEEEE-STTGGG-SS---SEEEEEE-TT--EEEEE
T ss_pred ceeccccceEEcCCCCeEEEEECCCCeEEEECCCC-C---EEEEEEeCCcccCcccccCCccEEEECCCCCEEEEc
Confidence 23456899999987 899999866555443 4556 3 333222 1 24678999999 889999965
|
Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A. |
| >PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators [] | Back alignment and domain information |
|---|
Probab=99.03 E-value=1e-07 Score=84.63 Aligned_cols=205 Identities=12% Similarity=0.160 Sum_probs=111.8
Q ss_pred cccceEEcCCCCEEEE-EecCCeEEEEECCCCCCCccceeeeEEecccCcCCCccceEEEeCCCCeEEEEEeCcCCCccc
Q 020019 46 FRECAKWDDSGRRFIV-SFLDGGIGQVAVPDDYPPGTVLEEVTLVKDLELTGNGSLGLVLDHPRNRLLVVAADVFGNKYS 124 (332)
Q Consensus 46 ~pegia~d~~g~~~~~-~~~~g~I~~vd~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~vd~~~g~l~v~~~~~~~~~~~ 124 (332)
.+.|++++++.+.+++ .-..+.|+.++.+ ++ ++. .+ .-.+. .-+-||++-.+ |++.+++. +..
T Consensus 23 e~SGLTy~pd~~tLfaV~d~~~~i~els~~-G~----vlr--~i-~l~g~--~D~EgI~y~g~-~~~vl~~E-----r~~ 86 (248)
T PF06977_consen 23 ELSGLTYNPDTGTLFAVQDEPGEIYELSLD-GK----VLR--RI-PLDGF--GDYEGITYLGN-GRYVLSEE-----RDQ 86 (248)
T ss_dssp -EEEEEEETTTTEEEEEETTTTEEEEEETT-------EEE--EE-E-SS---SSEEEEEE-ST-TEEEEEET-----TTT
T ss_pred CccccEEcCCCCeEEEEECCCCEEEEEcCC-CC----EEE--EE-eCCCC--CCceeEEEECC-CEEEEEEc-----CCC
Confidence 5789999998665544 4557899999975 54 233 22 11121 24779999874 77666653 245
Q ss_pred eEEEEECCC--CcE----EEEEecCCCCCCCCCccceEECCC-CcEEEEeCCCC-eEEEEcC--CCceEEEecCCCCCCc
Q 020019 125 AVAAYDLST--WNR----LFLTQLSGPSDGKSCADDVTVDAE-GNAYVTDVTGS-KIWKVGV--KGEFLSIISSPLFTPK 194 (332)
Q Consensus 125 ~l~~~d~~~--g~~----~~~~~l~~~~~~~~~~ndiavd~d-G~lyvtd~~~~-~I~~v~~--~g~~~~~~~~~~~~~p 194 (332)
.|+.++... ... ...+.+..+..++...-|++.|+. +++|++..... .||.++. .+.............
T Consensus 87 ~L~~~~~~~~~~~~~~~~~~~~~l~~~~~~N~G~EGla~D~~~~~L~v~kE~~P~~l~~~~~~~~~~~~~~~~~~~~~~- 165 (248)
T PF06977_consen 87 RLYIFTIDDDTTSLDRADVQKISLGFPNKGNKGFEGLAYDPKTNRLFVAKERKPKRLYEVNGFPGGFDLFVSDDQDLDD- 165 (248)
T ss_dssp EEEEEEE----TT--EEEEEEEE---S---SS--EEEEEETTTTEEEEEEESSSEEEEEEESTT-SS--EEEE-HHHH--
T ss_pred cEEEEEEeccccccchhhceEEecccccCCCcceEEEEEcCCCCEEEEEeCCCChhhEEEccccCccceeecccccccc-
Confidence 677776632 211 122344222223456889999998 46888765554 6888875 222111111100000
Q ss_pred ccccCccccCeEEEccCc-eEEEEeCCCCeEEEEeCCCCCCccceeEEEEecC------CCCCCCCeEEEeCCCeEEEEe
Q 020019 195 EWYKNLVGLNGIVYHPDG-FLIVIHTFSGNLFKIDIVDGVGEGEEIKLIRVAG------GPLSFGDGLELLSPTKLVVAG 267 (332)
Q Consensus 195 ~~~~~~~~~nGi~~~~dG-~Lyva~~~~~~i~~id~~~~~~~~~~~~~v~~~g------~~~~~pdGi~~~~dG~l~va~ 267 (332)
.......+-+++++|.- +||+-...+.+|..+|.+.. .+..+.+.. ..++.|.||++|++|+|||++
T Consensus 166 -~~~~~~d~S~l~~~p~t~~lliLS~es~~l~~~d~~G~-----~~~~~~L~~g~~gl~~~~~QpEGIa~d~~G~LYIvs 239 (248)
T PF06977_consen 166 -DKLFVRDLSGLSYDPRTGHLLILSDESRLLLELDRQGR-----VVSSLSLDRGFHGLSKDIPQPEGIAFDPDGNLYIVS 239 (248)
T ss_dssp -HT--SS---EEEEETTTTEEEEEETTTTEEEEE-TT-------EEEEEE-STTGGG-SS---SEEEEEE-TT--EEEEE
T ss_pred -ccceeccccceEEcCCCCeEEEEECCCCeEEEECCCCC-----EEEEEEeCCcccCcccccCCccEEEECCCCCEEEEc
Confidence 00123357899999986 99999999999999996643 566666552 235679999999999999998
Q ss_pred CCceEE
Q 020019 268 NPSARL 273 (332)
Q Consensus 268 ~~~~~~ 273 (332)
..+..+
T Consensus 240 EpNlfy 245 (248)
T PF06977_consen 240 EPNLFY 245 (248)
T ss_dssp TTTEEE
T ss_pred CCceEE
Confidence 665343
|
Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A. |
| >PF03022 MRJP: Major royal jelly protein; InterPro: IPR003534 The major royal jelly proteins (MRJPs) comprise 12 | Back alignment and domain information |
|---|
Probab=99.00 E-value=2.6e-07 Score=84.24 Aligned_cols=210 Identities=14% Similarity=0.157 Sum_probs=123.7
Q ss_pred ccceEEcCCCCEEEEEec-----C-------CeEEEEECCCCCCCccceeeeEEecccCcC-CCccceEEEeCCC-----
Q 020019 47 RECAKWDDSGRRFIVSFL-----D-------GGIGQVAVPDDYPPGTVLEEVTLVKDLELT-GNGSLGLVLDHPR----- 108 (332)
Q Consensus 47 pegia~d~~g~~~~~~~~-----~-------g~I~~vd~~~~~~~~~~~~~~~~~~~~~~~-~~~~~gi~vd~~~----- 108 (332)
..++.+|+.|++|+.+.. . .+|..+|+.+.+ +..+..+... -.. +...+.|++|..+
T Consensus 3 V~~v~iD~~~rLWVlD~G~~~~~~~~~~~~~pKLv~~Dl~t~~----li~~~~~p~~-~~~~~s~lndl~VD~~~~~~~~ 77 (287)
T PF03022_consen 3 VQRVQIDECGRLWVLDSGRPNGLQPPKQVCPPKLVAFDLKTNQ----LIRRYPFPPD-IAPPDSFLNDLVVDVRDGNCDD 77 (287)
T ss_dssp EEEEEE-TTSEEEEEE-CCHSSSSTTGHTS--EEEEEETTTTC----EEEEEE--CC-CS-TCGGEEEEEEECTTTTS-S
T ss_pred ccEEEEcCCCCEEEEeCCCcCCCCCCCCCCCcEEEEEECCCCc----EEEEEECChH-HcccccccceEEEEccCCCCcc
Confidence 357899999999998721 1 379999999876 3332222211 111 1256889999843
Q ss_pred CeEEEEEeCcCCCccceEEEEECCCCcEEEEEec---CCCCC------C-----CCCccceEECC---CC-cEEEEeCCC
Q 020019 109 NRLLVVAADVFGNKYSAVAAYDLSTWNRLFLTQL---SGPSD------G-----KSCADDVTVDA---EG-NAYVTDVTG 170 (332)
Q Consensus 109 g~l~v~~~~~~~~~~~~l~~~d~~~g~~~~~~~l---~~~~~------~-----~~~~ndiavd~---dG-~lyvtd~~~ 170 (332)
+.+|++|.. ...|.+||+++++..+...- ..|.. + .....+++..+ +| .||+.--..
T Consensus 78 ~~aYItD~~-----~~glIV~dl~~~~s~Rv~~~~~~~~p~~~~~~i~g~~~~~~dg~~gial~~~~~d~r~LYf~~lss 152 (287)
T PF03022_consen 78 GFAYITDSG-----GPGLIVYDLATGKSWRVLHNSFSPDPDAGPFTIGGESFQWPDGIFGIALSPISPDGRWLYFHPLSS 152 (287)
T ss_dssp EEEEEEETT-----TCEEEEEETTTTEEEEEETCGCTTS-SSEEEEETTEEEEETTSEEEEEE-TTSTTS-EEEEEETT-
T ss_pred eEEEEeCCC-----cCcEEEEEccCCcEEEEecCCcceeccccceeccCceEecCCCccccccCCCCCCccEEEEEeCCC
Confidence 479999874 34799999999876543221 00100 0 11245567755 55 488887777
Q ss_pred CeEEEEcCC----CceEEEe-cCCCCCCcccccCccccCeEEEccCceEEEEeCCCCeEEEEeCCCCCCccceeEEEEec
Q 020019 171 SKIWKVGVK----GEFLSII-SSPLFTPKEWYKNLVGLNGIVYHPDGFLIVIHTFSGNLFKIDIVDGVGEGEEIKLIRVA 245 (332)
Q Consensus 171 ~~I~~v~~~----g~~~~~~-~~~~~~~p~~~~~~~~~nGi~~~~dG~Lyva~~~~~~i~~id~~~~~~~~~~~~~v~~~ 245 (332)
..+|++... .....-. ....++.- ........|+++|++|.||+++...+.|+++++.+.-. .+..+.+...
T Consensus 153 ~~ly~v~T~~L~~~~~~~~~~~~~~v~~l--G~k~~~s~g~~~D~~G~ly~~~~~~~aI~~w~~~~~~~-~~~~~~l~~d 229 (287)
T PF03022_consen 153 RKLYRVPTSVLRDPSLSDAQALASQVQDL--GDKGSQSDGMAIDPNGNLYFTDVEQNAIGCWDPDGPYT-PENFEILAQD 229 (287)
T ss_dssp SEEEEEEHHHHCSTT--HHH-HHHT-EEE--EE---SECEEEEETTTEEEEEECCCTEEEEEETTTSB--GCCEEEEEE-
T ss_pred CcEEEEEHHHhhCccccccccccccceec--cccCCCCceEEECCCCcEEEecCCCCeEEEEeCCCCcC-ccchheeEEc
Confidence 788887642 1110000 00000000 00013568999999999999999999999999986311 1134444444
Q ss_pred CCCCCCCCeEEEeC--CCeEEEEeCC
Q 020019 246 GGPLSFGDGLELLS--PTKLVVAGNP 269 (332)
Q Consensus 246 g~~~~~pdGi~~~~--dG~l~va~~~ 269 (332)
.+.+..||++.++. +|.||+..|+
T Consensus 230 ~~~l~~pd~~~i~~~~~g~L~v~snr 255 (287)
T PF03022_consen 230 PRTLQWPDGLKIDPEGDGYLWVLSNR 255 (287)
T ss_dssp CC-GSSEEEEEE-T--TS-EEEEE-S
T ss_pred CceeeccceeeeccccCceEEEEECc
Confidence 23478999999999 9999999765
|
5% of the mass, and 82-90% of the protein content [], of honeybee (Apis mellifera) royal jelly. Royal jelly is a substance secreted by the cephalic glands of nurse bees [] and it is used to trigger development of a queen bee from a bee larva. The biological function of the MRJPs is unknown, but they are believed to play a major role in nutrition due to their high essential amino acid content []. Two royal jelly proteins, MRJP3 and MRJP5, contain a tandem repeat that results from a high genetic variablility. This polymorphism may be useful for genotyping individual bees [].; PDB: 3Q6P_B 3Q6K_A 3Q6T_A 2QE8_B. |
| >PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A | Back alignment and domain information |
|---|
Probab=98.99 E-value=4.6e-07 Score=85.61 Aligned_cols=193 Identities=17% Similarity=0.228 Sum_probs=117.1
Q ss_pred CCEEEEE-ecCCeEEEEECCCCCCCccceeeeEEecccCcCCCccceEEEeCCCCeEEEEEeCcCCCccceEEEEECCCC
Q 020019 56 GRRFIVS-FLDGGIGQVAVPDDYPPGTVLEEVTLVKDLELTGNGSLGLVLDHPRNRLLVVAADVFGNKYSAVAAYDLSTW 134 (332)
Q Consensus 56 g~~~~~~-~~~g~I~~vd~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~vd~~~g~l~v~~~~~~~~~~~~l~~~d~~~g 134 (332)
++++++. ..+++|..+|..+.+ +.. ++. . .+....++.+.++...+|+++. .+.|.++|+.++
T Consensus 5 ~~l~~V~~~~~~~v~viD~~t~~----~~~--~i~---~-~~~~h~~~~~s~Dgr~~yv~~r------dg~vsviD~~~~ 68 (369)
T PF02239_consen 5 GNLFYVVERGSGSVAVIDGATNK----VVA--RIP---T-GGAPHAGLKFSPDGRYLYVANR------DGTVSVIDLATG 68 (369)
T ss_dssp GGEEEEEEGGGTEEEEEETTT-S----EEE--EEE-----STTEEEEEE-TT-SSEEEEEET------TSEEEEEETTSS
T ss_pred ccEEEEEecCCCEEEEEECCCCe----EEE--EEc---C-CCCceeEEEecCCCCEEEEEcC------CCeEEEEECCcc
Confidence 5677655 778999999987665 222 222 1 1112356778887445888864 357999999999
Q ss_pred cEEEEEecCCCCCCCCCccceEECCCCc-EEEEeCCCCeEEEEcCC-CceEEEecCCCCCCcccccCccccCeEEEccCc
Q 020019 135 NRLFLTQLSGPSDGKSCADDVTVDAEGN-AYVTDVTGSKIWKVGVK-GEFLSIISSPLFTPKEWYKNLVGLNGIVYHPDG 212 (332)
Q Consensus 135 ~~~~~~~l~~~~~~~~~~ndiavd~dG~-lyvtd~~~~~I~~v~~~-g~~~~~~~~~~~~~p~~~~~~~~~nGi~~~~dG 212 (332)
+....+.. ...|.++++.+||+ +|+++...+.+..+|.. .+....+......... ......+|..++..
T Consensus 69 ~~v~~i~~------G~~~~~i~~s~DG~~~~v~n~~~~~v~v~D~~tle~v~~I~~~~~~~~~---~~~Rv~aIv~s~~~ 139 (369)
T PF02239_consen 69 KVVATIKV------GGNPRGIAVSPDGKYVYVANYEPGTVSVIDAETLEPVKTIPTGGMPVDG---PESRVAAIVASPGR 139 (369)
T ss_dssp SEEEEEE-------SSEEEEEEE--TTTEEEEEEEETTEEEEEETTT--EEEEEE--EE-TTT---S---EEEEEE-SSS
T ss_pred cEEEEEec------CCCcceEEEcCCCCEEEEEecCCCceeEeccccccceeecccccccccc---cCCCceeEEecCCC
Confidence 98877665 35688999999997 89999999999999975 4444333221111000 11234688888888
Q ss_pred -eEEEEeCCCCeEEEEeCCCCCCccceeEEEEecCCCCCCCCeEEEeCCCeEEEE-eCCce--EEEEcCCC
Q 020019 213 -FLIVIHTFSGNLFKIDIVDGVGEGEEIKLIRVAGGPLSFGDGLELLSPTKLVVA-GNPSA--RLVESSDG 279 (332)
Q Consensus 213 -~Lyva~~~~~~i~~id~~~~~~~~~~~~~v~~~g~~~~~pdGi~~~~dG~l~va-~~~~~--~~v~~~dg 279 (332)
..+++-..+++|+.+|..+.+. ...+.+... ..|.+..++++|+.|++ .+.+. .++....+
T Consensus 140 ~~fVv~lkd~~~I~vVdy~d~~~--~~~~~i~~g----~~~~D~~~dpdgry~~va~~~sn~i~viD~~~~ 204 (369)
T PF02239_consen 140 PEFVVNLKDTGEIWVVDYSDPKN--LKVTTIKVG----RFPHDGGFDPDGRYFLVAANGSNKIAVIDTKTG 204 (369)
T ss_dssp SEEEEEETTTTEEEEEETTTSSC--EEEEEEE------TTEEEEEE-TTSSEEEEEEGGGTEEEEEETTTT
T ss_pred CEEEEEEccCCeEEEEEeccccc--cceeeeccc----ccccccccCcccceeeecccccceeEEEeeccc
Confidence 6667778899999999886521 123344432 46788999999986544 44433 33455555
|
... |
| >PF03088 Str_synth: Strictosidine synthase; InterPro: IPR018119 This entry represents a conserved region found in strictosidine synthase (4 | Back alignment and domain information |
|---|
Probab=98.98 E-value=2.2e-09 Score=79.55 Aligned_cols=69 Identities=22% Similarity=0.380 Sum_probs=52.5
Q ss_pred cceEECCC-CcEEEEeCC-----------------CCeEEEEcCCCceEEEecCCCCCCcccccCccccCeEEEccCc-e
Q 020019 153 DDVTVDAE-GNAYVTDVT-----------------GSKIWKVGVKGEFLSIISSPLFTPKEWYKNLVGLNGIVYHPDG-F 213 (332)
Q Consensus 153 ndiavd~d-G~lyvtd~~-----------------~~~I~~v~~~g~~~~~~~~~~~~~p~~~~~~~~~nGi~~~~dG-~ 213 (332)
||++|+++ |.+||||+. +|+++++||..+...++.. ++..||||++++|+ .
T Consensus 1 ndldv~~~~g~vYfTdsS~~~~~~~~~~~~le~~~~GRll~ydp~t~~~~vl~~----------~L~fpNGVals~d~~~ 70 (89)
T PF03088_consen 1 NDLDVDQDTGTVYFTDSSSRYDRRDWVYDLLEGRPTGRLLRYDPSTKETTVLLD----------GLYFPNGVALSPDESF 70 (89)
T ss_dssp -EEEE-TTT--EEEEES-SS--TTGHHHHHHHT---EEEEEEETTTTEEEEEEE----------EESSEEEEEE-TTSSE
T ss_pred CceeEecCCCEEEEEeCccccCccceeeeeecCCCCcCEEEEECCCCeEEEehh----------CCCccCeEEEcCCCCE
Confidence 68999999 899999973 6899999999765444322 34578999999999 8
Q ss_pred EEEEeCCCCeEEEEeCCC
Q 020019 214 LIVIHTFSGNLFKIDIVD 231 (332)
Q Consensus 214 Lyva~~~~~~i~~id~~~ 231 (332)
|+|+++...||.|+.+++
T Consensus 71 vlv~Et~~~Ri~rywl~G 88 (89)
T PF03088_consen 71 VLVAETGRYRILRYWLKG 88 (89)
T ss_dssp EEEEEGGGTEEEEEESSS
T ss_pred EEEEeccCceEEEEEEeC
Confidence 999999999999999874
|
3.3.2 from EC), a key enzyme in alkaloid biosynthesis. It catalyses the Pictet-Spengler stereospecific condensation of tryptamine with secologanin to form strictosidine []. The structure of the native enzyme from the Indian medicinal plant Rauvolfia serpentina (Serpentwood) (Devilpepper) represents the first example of a six-bladed four-stranded beta-propeller fold from the plant kingdom [].; GO: 0016844 strictosidine synthase activity, 0009058 biosynthetic process; PDB: 2FPB_A 2V91_B 2FP8_A 3V1S_B 2FPC_A 2VAQ_A 2FP9_B. |
| >TIGR03606 non_repeat_PQQ dehydrogenase, PQQ-dependent, s-GDH family | Back alignment and domain information |
|---|
Probab=98.94 E-value=2.3e-07 Score=88.88 Aligned_cols=173 Identities=16% Similarity=0.226 Sum_probs=108.1
Q ss_pred EEEecCCc-cccceEEcCCCCEEEEEecCCeEEEEECCCCCCCccceeeeEEecccCc----CCCccceEEEeCC-----
Q 020019 38 YHYHSSSF-FRECAKWDDSGRRFIVSFLDGGIGQVAVPDDYPPGTVLEEVTLVKDLEL----TGNGSLGLVLDHP----- 107 (332)
Q Consensus 38 i~~~~~~~-~pegia~d~~g~~~~~~~~~g~I~~vd~~~~~~~~~~~~~~~~~~~~~~----~~~~~~gi~vd~~----- 107 (332)
++....++ .|.++++.++|++|++....|+|++++..++.. . ....-+.. ...++.||+++|+
T Consensus 22 ~~~va~GL~~Pw~maflPDG~llVtER~~G~I~~v~~~~~~~-----~--~~~~l~~v~~~~ge~GLlglal~PdF~~~~ 94 (454)
T TIGR03606 22 KKVLLSGLNKPWALLWGPDNQLWVTERATGKILRVNPETGEV-----K--VVFTLPEIVNDAQHNGLLGLALHPDFMQEK 94 (454)
T ss_pred EEEEECCCCCceEEEEcCCCeEEEEEecCCEEEEEeCCCCce-----e--eeecCCceeccCCCCceeeEEECCCccccC
Confidence 33345566 999999999999888776579999998765431 1 11111111 1247899999964
Q ss_pred -CCeEEEEEeCcCCC----ccceEEEEECCC--CcE---E-EEEecCCCCCCCCCccceEECCCCcEEEEe--C------
Q 020019 108 -RNRLLVVAADVFGN----KYSAVAAYDLST--WNR---L-FLTQLSGPSDGKSCADDVTVDAEGNAYVTD--V------ 168 (332)
Q Consensus 108 -~g~l~v~~~~~~~~----~~~~l~~~d~~~--g~~---~-~~~~l~~~~~~~~~~ndiavd~dG~lyvtd--~------ 168 (332)
++.||++....... ...+|.+|.... .+. . .+..+ |....++...|+++|||.|||+- .
T Consensus 95 ~n~~lYvsyt~~~~~~~~~~~~~I~R~~l~~~~~~l~~~~~Il~~l--P~~~~H~GgrI~FgPDG~LYVs~GD~g~~~~~ 172 (454)
T TIGR03606 95 GNPYVYISYTYKNGDKELPNHTKIVRYTYDKSTQTLEKPVDLLAGL--PAGNDHNGGRLVFGPDGKIYYTIGEQGRNQGA 172 (454)
T ss_pred CCcEEEEEEeccCCCCCccCCcEEEEEEecCCCCccccceEEEecC--CCCCCcCCceEEECCCCcEEEEECCCCCCCcc
Confidence 35799986431110 145787776542 111 1 11223 22335778889999999999952 2
Q ss_pred ------------------------CCCeEEEEcCCCceEEEecCCCCC--Cc-ccccCccccCeEEEccCceEEEEeCCC
Q 020019 169 ------------------------TGSKIWKVGVKGEFLSIISSPLFT--PK-EWYKNLVGLNGIVYHPDGFLIVIHTFS 221 (332)
Q Consensus 169 ------------------------~~~~I~~v~~~g~~~~~~~~~~~~--~p-~~~~~~~~~nGi~~~~dG~Lyva~~~~ 221 (332)
..|.|+|+++||+... +++... .| .+..++-+|.|++|+|+|.||+++.+.
T Consensus 173 n~~~~~~aQ~~~~~~~~~~~d~~~~~GkILRin~DGsiP~--dNPf~~g~~~eIyA~G~RNp~Gla~dp~G~Lw~~e~Gp 250 (454)
T TIGR03606 173 NFFLPNQAQHTPTQQELNGKDYHAYMGKVLRLNLDGSIPK--DNPSINGVVSHIFTYGHRNPQGLAFTPDGTLYASEQGP 250 (454)
T ss_pred cccCcchhccccccccccccCcccCceEEEEEcCCCCCCC--CCCccCCCcceEEEEeccccceeEECCCCCEEEEecCC
Confidence 1347888888876321 121111 01 133466789999999999999999864
|
PQQ, or pyrroloquinoline-quinone, serves as a cofactor for a number of sugar and alcohol dehydrogenases in a limited number of bacterial species. Most characterized PQQ-dependent enzymes have multiple repeats of a sequence region described by pfam01011 (PQQ enzyme repeat), but this protein family in unusual in lacking that repeat. Below the noise cutoff are related proteins mostly from species that lack PQQ biosynthesis. |
| >TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain | Back alignment and domain information |
|---|
Probab=98.94 E-value=8.8e-07 Score=82.49 Aligned_cols=209 Identities=13% Similarity=0.167 Sum_probs=113.6
Q ss_pred CccccceEEcCCCCEEEEE-ec-CCeEEEEECCCCCCCccceeeeEEecccCcCCCccceEEEeCCCCeEEEEEeCcCCC
Q 020019 44 SFFRECAKWDDSGRRFIVS-FL-DGGIGQVAVPDDYPPGTVLEEVTLVKDLELTGNGSLGLVLDHPRNRLLVVAADVFGN 121 (332)
Q Consensus 44 ~~~pegia~d~~g~~~~~~-~~-~g~I~~vd~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~vd~~~g~l~v~~~~~~~~ 121 (332)
+.+|+..++++||+.+|+. .. ...|.++|..+++. .. ++ .-|+ +.......++ .....| .+.
T Consensus 104 ~~~~~~~~ls~dgk~l~V~n~~p~~~V~VvD~~~~kv----v~--ei-~vp~----~~~vy~t~e~-~~~~~~-~Dg--- 167 (352)
T TIGR02658 104 GTYPWMTSLTPDNKTLLFYQFSPSPAVGVVDLEGKAF----VR--MM-DVPD----CYHIFPTAND-TFFMHC-RDG--- 167 (352)
T ss_pred cCccceEEECCCCCEEEEecCCCCCEEEEEECCCCcE----EE--EE-eCCC----CcEEEEecCC-ccEEEe-ecC---
Confidence 3466799999999976654 55 78999999987762 22 12 1232 4444444443 444333 221
Q ss_pred ccceEEEEECCCCcEEE-EEec-CCCCCC-CCCccceEECC-CCc-EEEEeCCCCeEEEEcCCCceEEE---ecCCCCCC
Q 020019 122 KYSAVAAYDLSTWNRLF-LTQL-SGPSDG-KSCADDVTVDA-EGN-AYVTDVTGSKIWKVGVKGEFLSI---ISSPLFTP 193 (332)
Q Consensus 122 ~~~~l~~~d~~~g~~~~-~~~l-~~~~~~-~~~~ndiavd~-dG~-lyvtd~~~~~I~~v~~~g~~~~~---~~~~~~~~ 193 (332)
......+|. +|+... ...+ ...... ..+| .+.+ +|. +|++.. |.|+.+|..+..... +..-.+..
T Consensus 168 -~~~~v~~d~-~g~~~~~~~~vf~~~~~~v~~rP---~~~~~dg~~~~vs~e--G~V~~id~~~~~~~~~~~~~~~~~~~ 240 (352)
T TIGR02658 168 -SLAKVGYGT-KGNPKIKPTEVFHPEDEYLINHP---AYSNKSGRLVWPTYT--GKIFQIDLSSGDAKFLPAIEAFTEAE 240 (352)
T ss_pred -ceEEEEecC-CCceEEeeeeeecCCccccccCC---ceEcCCCcEEEEecC--CeEEEEecCCCcceecceeeeccccc
Confidence 111122333 233221 1111 000000 1233 3344 665 666665 999999965432211 11111110
Q ss_pred --cccccCccccCeEEEccCc-eEEEEe---------CCCCeEEEEeCCCCCCccceeEEEEecCCCCCCCCeEEEeCCC
Q 020019 194 --KEWYKNLVGLNGIVYHPDG-FLIVIH---------TFSGNLFKIDIVDGVGEGEEIKLIRVAGGPLSFGDGLELLSPT 261 (332)
Q Consensus 194 --p~~~~~~~~~nGi~~~~dG-~Lyva~---------~~~~~i~~id~~~~~~~~~~~~~v~~~g~~~~~pdGi~~~~dG 261 (332)
..+.+ .+...+++++|| +|||+. ...++|+.||..++ +.+..+.+. ..|.+|++++||
T Consensus 241 ~~~~wrP--~g~q~ia~~~dg~~lyV~~~~~~~~thk~~~~~V~ViD~~t~----kvi~~i~vG----~~~~~iavS~Dg 310 (352)
T TIGR02658 241 KADGWRP--GGWQQVAYHRARDRIYLLADQRAKWTHKTASRFLFVVDAKTG----KRLRKIELG----HEIDSINVSQDA 310 (352)
T ss_pred cccccCC--CcceeEEEcCCCCEEEEEecCCccccccCCCCEEEEEECCCC----eEEEEEeCC----CceeeEEECCCC
Confidence 11111 233349999998 999953 23478999999987 356666654 478999999997
Q ss_pred e--EEEEeCCc--eEEEEcCCCceEEEEEeee
Q 020019 262 K--LVVAGNPS--ARLVESSDGWETAAVVAKF 289 (332)
Q Consensus 262 ~--l~va~~~~--~~~v~~~dg~~~~~~~~~~ 289 (332)
+ ||+++..+ ..+++...+ ++++.+
T Consensus 311 kp~lyvtn~~s~~VsViD~~t~----k~i~~i 338 (352)
T TIGR02658 311 KPLLYALSTGDKTLYIFDAETG----KELSSV 338 (352)
T ss_pred CeEEEEeCCCCCcEEEEECcCC----eEEeee
Confidence 7 56665332 334455545 555554
|
This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome. |
| >KOG4659 consensus Uncharacterized conserved protein (Rhs family) [Function unknown] | Back alignment and domain information |
|---|
Probab=98.93 E-value=8.4e-08 Score=98.19 Aligned_cols=206 Identities=15% Similarity=0.166 Sum_probs=128.3
Q ss_pred cccceEEcC-CCCEEEEEecCCeEEEEECCCCCCCccceeeeEEecc------c--CcCC----------CccceEEEeC
Q 020019 46 FRECAKWDD-SGRRFIVSFLDGGIGQVAVPDDYPPGTVLEEVTLVKD------L--ELTG----------NGSLGLVLDH 106 (332)
Q Consensus 46 ~pegia~d~-~g~~~~~~~~~g~I~~vd~~~~~~~~~~~~~~~~~~~------~--~~~~----------~~~~gi~vd~ 106 (332)
+-.-+|++| +|.+|+++....+|||+..-..+-+ ....+.... | +..| ..|.||++|.
T Consensus 408 h~Yy~AvsPvdgtlyvSdp~s~qv~rv~sl~~~d~---~~N~evvaG~Ge~Clp~desCGDGalA~dA~L~~PkGIa~dk 484 (1899)
T KOG4659|consen 408 HSYYIAVSPVDGTLYVSDPLSKQVWRVSSLEPQDS---RNNYEVVAGDGEVCLPADESCGDGALAQDAQLIFPKGIAFDK 484 (1899)
T ss_pred ceeEEEecCcCceEEecCCCcceEEEeccCCcccc---ccCeeEEeccCcCccccccccCcchhcccceeccCCceeEcc
Confidence 445689998 5777777777889999975433210 000011110 1 1111 2589999999
Q ss_pred CCCeEEEEEeCcCCCccceEEEEECCCCcEEEEEecCC----C--CC--------CCCCccceEECC-CCcEEEEeCCCC
Q 020019 107 PRNRLLVVAADVFGNKYSAVAAYDLSTWNRLFLTQLSG----P--SD--------GKSCADDVTVDA-EGNAYVTDVTGS 171 (332)
Q Consensus 107 ~~g~l~v~~~~~~~~~~~~l~~~d~~~g~~~~~~~l~~----~--~~--------~~~~~ndiavd~-dG~lyvtd~~~~ 171 (332)
. |.||+++.. .|.+.|.. |-....+.-.. | .. ...-|.++|++| |+.+||-| ++
T Consensus 485 ~-g~lYfaD~t-------~IR~iD~~-giIstlig~~~~~~~p~~C~~~~kl~~~~leWPT~LaV~Pmdnsl~Vld--~n 553 (1899)
T KOG4659|consen 485 M-GNLYFADGT-------RIRVIDTT-GIISTLIGTTPDQHPPRTCAQITKLVDLQLEWPTSLAVDPMDNSLLVLD--TN 553 (1899)
T ss_pred C-CcEEEeccc-------EEEEeccC-ceEEEeccCCCCccCccccccccchhheeeecccceeecCCCCeEEEee--cc
Confidence 6 999999863 45556642 33222211100 0 00 124689999999 67899998 58
Q ss_pred eEEEEcCCCceEEEecCCCC-CCcc---------cccCccccCeEEEccCceEEEEeCCCCeEEEEeCC--CCCCcccee
Q 020019 172 KIWKVGVKGEFLSIISSPLF-TPKE---------WYKNLVGLNGIVYHPDGFLIVIHTFSGNLFKIDIV--DGVGEGEEI 239 (332)
Q Consensus 172 ~I~~v~~~g~~~~~~~~~~~-~~p~---------~~~~~~~~nGi~~~~dG~Lyva~~~~~~i~~id~~--~~~~~~~~~ 239 (332)
.|++++++++....++.|.- ..|. -...+..+..|+++++|.|||++++..+|-|+..- ++ .+
T Consensus 554 vvlrit~~~rV~Ii~GrP~hC~~a~~t~~~skla~H~tl~~~r~Iavg~~G~lyvaEsD~rriNrvr~~~tdg-----~i 628 (1899)
T KOG4659|consen 554 VVLRITVVHRVRIILGRPTHCDLANATSSASKLADHRTLLIQRDIAVGTDGALYVAESDGRRINRVRKLSTDG-----TI 628 (1899)
T ss_pred eEEEEccCccEEEEcCCccccccCCCchhhhhhhhhhhhhhhhceeecCCceEEEEeccchhhhheEEeccCc-----eE
Confidence 99999999887755443321 1121 12244567899999999999999998777554322 12 11
Q ss_pred EEEE-----------------------ecCCCCCCCCeEEEeCCCeEEEEeCCc
Q 020019 240 KLIR-----------------------VAGGPLSFGDGLELLSPTKLVVAGNPS 270 (332)
Q Consensus 240 ~~v~-----------------------~~g~~~~~pdGi~~~~dG~l~va~~~~ 270 (332)
..+. ...+.++.|..+|+.|||.+|+|+.++
T Consensus 629 ~ilaGa~S~C~C~~~~~cdcfs~~~~~At~A~lnsp~alaVsPdg~v~IAD~gN 682 (1899)
T KOG4659|consen 629 SILAGAKSPCSCDVAACCDCFSLRDVAATQAKLNSPYALAVSPDGDVIIADSGN 682 (1899)
T ss_pred EEecCCCCCCCcccccCCccccccchhhhccccCCcceEEECCCCcEEEecCCc
Confidence 1111 011457889999999999999998544
|
|
| >KOG4659 consensus Uncharacterized conserved protein (Rhs family) [Function unknown] | Back alignment and domain information |
|---|
Probab=98.90 E-value=4.5e-07 Score=93.05 Aligned_cols=239 Identities=18% Similarity=0.210 Sum_probs=147.7
Q ss_pred cccceEEcCCCCEEEEEecCCeEEEEECCCCCCCccceeeeEEecccCc-CCCccceEEEeCCCCeEEEEEeCcCCCccc
Q 020019 46 FRECAKWDDSGRRFIVSFLDGGIGQVAVPDDYPPGTVLEEVTLVKDLEL-TGNGSLGLVLDHPRNRLLVVAADVFGNKYS 124 (332)
Q Consensus 46 ~pegia~d~~g~~~~~~~~~g~I~~vd~~~~~~~~~~~~~~~~~~~~~~-~~~~~~gi~vd~~~g~l~v~~~~~~~~~~~ 124 (332)
.|-.+|+.+||.+|+++. +-|.|+.+++... +.+. -+. ...+-.-|+++|-+|.|||++.. ..
T Consensus 366 aPvala~a~DGSl~VGDf--NyIRRI~~dg~v~--------tIl~-L~~t~~sh~Yy~AvsPvdgtlyvSdp~-----s~ 429 (1899)
T KOG4659|consen 366 APVALAYAPDGSLIVGDF--NYIRRISQDGQVS--------TILT-LGLTDTSHSYYIAVSPVDGTLYVSDPL-----SK 429 (1899)
T ss_pred ceeeEEEcCCCcEEEccc--hheeeecCCCceE--------EEEE-ecCCCccceeEEEecCcCceEEecCCC-----cc
Confidence 677799999999999874 5688898874421 2221 111 11256789999988999999863 23
Q ss_pred eEEEEE-CCCCcEE----EE-------EecCC-CCC-------CCCCccceEECCCCcEEEEeCCCCeEEEEcCCCceEE
Q 020019 125 AVAAYD-LSTWNRL----FL-------TQLSG-PSD-------GKSCADDVTVDAEGNAYVTDVTGSKIWKVGVKGEFLS 184 (332)
Q Consensus 125 ~l~~~d-~~~g~~~----~~-------~~l~~-~~~-------~~~~~ndiavd~dG~lyvtd~~~~~I~~v~~~g~~~~ 184 (332)
++++.. ++..... .. .+... .++ ...+|.||++|.+|++|++|. -.|.++|.+|-...
T Consensus 430 qv~rv~sl~~~d~~~N~evvaG~Ge~Clp~desCGDGalA~dA~L~~PkGIa~dk~g~lYfaD~--t~IR~iD~~giIst 507 (1899)
T KOG4659|consen 430 QVWRVSSLEPQDSRNNYEVVAGDGEVCLPADESCGDGALAQDAQLIFPKGIAFDKMGNLYFADG--TRIRVIDTTGIIST 507 (1899)
T ss_pred eEEEeccCCccccccCeeEEeccCcCccccccccCcchhcccceeccCCceeEccCCcEEEecc--cEEEEeccCceEEE
Confidence 444432 2111111 00 01100 011 136899999999999999995 46778999988777
Q ss_pred EecCCCCCC-cc--------cccCccccCeEEEccCc-eEEEEeCCCCeEEEEeCCCCCCccceeEEEE-------ecC-
Q 020019 185 IISSPLFTP-KE--------WYKNLVGLNGIVYHPDG-FLIVIHTFSGNLFKIDIVDGVGEGEEIKLIR-------VAG- 246 (332)
Q Consensus 185 ~~~~~~~~~-p~--------~~~~~~~~nGi~~~~dG-~Lyva~~~~~~i~~id~~~~~~~~~~~~~v~-------~~g- 246 (332)
++++..... |. ..-.+-.|..++++|=. .|||-+ ++-|+||+.... +..+. +++
T Consensus 508 lig~~~~~~~p~~C~~~~kl~~~~leWPT~LaV~Pmdnsl~Vld--~nvvlrit~~~r------V~Ii~GrP~hC~~a~~ 579 (1899)
T KOG4659|consen 508 LIGTTPDQHPPRTCAQITKLVDLQLEWPTSLAVDPMDNSLLVLD--TNVVLRITVVHR------VRIILGRPTHCDLANA 579 (1899)
T ss_pred eccCCCCccCccccccccchhheeeecccceeecCCCCeEEEee--cceEEEEccCcc------EEEEcCCccccccCCC
Confidence 765433322 21 11245679999999965 999976 467888887632 22121 111
Q ss_pred ----------CCCCCCCeEEEeCCCeEEEEeCCc---eEE-EEcCCCceEEEEEee--------------ec-------C
Q 020019 247 ----------GPLSFGDGLELLSPTKLVVAGNPS---ARL-VESSDGWETAAVVAK--------------FS-------G 291 (332)
Q Consensus 247 ----------~~~~~pdGi~~~~dG~l~va~~~~---~~~-v~~~dg~~~~~~~~~--------------~~-------~ 291 (332)
..+-.+..|++..+|.|||++... +++ ....|| +..-+... ++ .
T Consensus 580 t~~~skla~H~tl~~~r~Iavg~~G~lyvaEsD~rriNrvr~~~tdg-~i~ilaGa~S~C~C~~~~~cdcfs~~~~~At~ 658 (1899)
T KOG4659|consen 580 TSSASKLADHRTLLIQRDIAVGTDGALYVAESDGRRINRVRKLSTDG-TISILAGAKSPCSCDVAACCDCFSLRDVAATQ 658 (1899)
T ss_pred chhhhhhhhhhhhhhhhceeecCCceEEEEeccchhhhheEEeccCc-eEEEecCCCCCCCcccccCCccccccchhhhc
Confidence 113346789999999999997432 121 234555 44322211 11 1
Q ss_pred CCcccceEEEE-ECCeEEEEE
Q 020019 292 PVHRLATAATV-KDGRVYLNH 311 (332)
Q Consensus 292 ~~~~~pt~va~-~~g~lyv~~ 311 (332)
..++.|.++|+ .+|++||+.
T Consensus 659 A~lnsp~alaVsPdg~v~IAD 679 (1899)
T KOG4659|consen 659 AKLNSPYALAVSPDGDVIIAD 679 (1899)
T ss_pred cccCCcceEEECCCCcEEEec
Confidence 13788999999 899999954
|
|
| >PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A | Back alignment and domain information |
|---|
Probab=98.89 E-value=3.5e-06 Score=79.60 Aligned_cols=190 Identities=18% Similarity=0.213 Sum_probs=113.1
Q ss_pred ccceEEcCCCCEEEEEecCCeEEEEECCCCCCCccceeeeEEecccCcCCCccceEEEeCCCCeEEEEEeCcCCCccceE
Q 020019 47 RECAKWDDSGRRFIVSFLDGGIGQVAVPDDYPPGTVLEEVTLVKDLELTGNGSLGLVLDHPRNRLLVVAADVFGNKYSAV 126 (332)
Q Consensus 47 pegia~d~~g~~~~~~~~~g~I~~vd~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~vd~~~g~l~v~~~~~~~~~~~~l 126 (332)
+.++++.+||+.+|+...+|.|.++|+.+.+. .. ++. .|..|.|++++++...+|+++.. .+.+
T Consensus 39 h~~~~~s~Dgr~~yv~~rdg~vsviD~~~~~~----v~--~i~-----~G~~~~~i~~s~DG~~~~v~n~~-----~~~v 102 (369)
T PF02239_consen 39 HAGLKFSPDGRYLYVANRDGTVSVIDLATGKV----VA--TIK-----VGGNPRGIAVSPDGKYVYVANYE-----PGTV 102 (369)
T ss_dssp EEEEE-TT-SSEEEEEETTSEEEEEETTSSSE----EE--EEE------SSEEEEEEE--TTTEEEEEEEE-----TTEE
T ss_pred eeEEEecCCCCEEEEEcCCCeEEEEECCcccE----EE--EEe-----cCCCcceEEEcCCCCEEEEEecC-----CCce
Confidence 45678999999777665689999999987762 22 222 23478999999973346666542 4578
Q ss_pred EEEECCCCcEEEEEecCC-CCC-CCCCccceEECCCCcEE-EEeCCCCeEEEEcCC-CceE--EEecCCCCCCcccccCc
Q 020019 127 AAYDLSTWNRLFLTQLSG-PSD-GKSCADDVTVDAEGNAY-VTDVTGSKIWKVGVK-GEFL--SIISSPLFTPKEWYKNL 200 (332)
Q Consensus 127 ~~~d~~~g~~~~~~~l~~-~~~-~~~~~ndiavd~dG~ly-vtd~~~~~I~~v~~~-g~~~--~~~~~~~~~~p~~~~~~ 200 (332)
.++|.++.++...+...+ +.. ..++..++...+.+..| ++-...+.|+.+|.. .+.. ......
T Consensus 103 ~v~D~~tle~v~~I~~~~~~~~~~~~Rv~aIv~s~~~~~fVv~lkd~~~I~vVdy~d~~~~~~~~i~~g----------- 171 (369)
T PF02239_consen 103 SVIDAETLEPVKTIPTGGMPVDGPESRVAAIVASPGRPEFVVNLKDTGEIWVVDYSDPKNLKVTTIKVG----------- 171 (369)
T ss_dssp EEEETTT--EEEEEE--EE-TTTS---EEEEEE-SSSSEEEEEETTTTEEEEEETTTSSCEEEEEEE-------------
T ss_pred eEeccccccceeecccccccccccCCCceeEEecCCCCEEEEEEccCCeEEEEEeccccccceeeeccc-----------
Confidence 899999988887665421 111 13456677777776644 556678999999854 2322 222222
Q ss_pred cccCeEEEccCc-eEEEEeCCCCeEEEEeCCCCCCccceeEEEEecCCCCCCCCeEEEeCC-CeEEEEe
Q 020019 201 VGLNGIVYHPDG-FLIVIHTFSGNLFKIDIVDGVGEGEEIKLIRVAGGPLSFGDGLELLSP-TKLVVAG 267 (332)
Q Consensus 201 ~~~nGi~~~~dG-~Lyva~~~~~~i~~id~~~~~~~~~~~~~v~~~g~~~~~pdGi~~~~d-G~l~va~ 267 (332)
..|.+..++++| +++++...+++|..+|.++++ .+..+.....+.+.|-.--.++. |-+|.+.
T Consensus 172 ~~~~D~~~dpdgry~~va~~~sn~i~viD~~~~k----~v~~i~~g~~p~~~~~~~~php~~g~vw~~~ 236 (369)
T PF02239_consen 172 RFPHDGGFDPDGRYFLVAANGSNKIAVIDTKTGK----LVALIDTGKKPHPGPGANFPHPGFGPVWATS 236 (369)
T ss_dssp TTEEEEEE-TTSSEEEEEEGGGTEEEEEETTTTE----EEEEEE-SSSBEETTEEEEEETTTEEEEEEE
T ss_pred ccccccccCcccceeeecccccceeEEEeeccce----EEEEeeccccccccccccccCCCcceEEeec
Confidence 246788999999 899999999999999988762 34444432112122211124555 6777775
|
... |
| >KOG1214 consensus Nidogen and related basement membrane protein proteins [Cell wall/membrane/envelope biogenesis; Extracellular structures] | Back alignment and domain information |
|---|
Probab=98.85 E-value=1.1e-07 Score=93.78 Aligned_cols=193 Identities=20% Similarity=0.183 Sum_probs=135.2
Q ss_pred CCccccceEEcCCCCEEEEE-ecCCeEEEEECCCCCCCccceeeeEEecccCcCCCccceEEEeCCCCeEEEEEeCcCCC
Q 020019 43 SSFFRECAKWDDSGRRFIVS-FLDGGIGQVAVPDDYPPGTVLEEVTLVKDLELTGNGSLGLVLDHPRNRLLVVAADVFGN 121 (332)
Q Consensus 43 ~~~~pegia~d~~g~~~~~~-~~~g~I~~vd~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~vd~~~g~l~v~~~~~~~~ 121 (332)
++.-+-||++|=..++.|++ +....|.+-++.+++. + +++ ..++. +|.||+||--+.++|.++.-..
T Consensus 1023 p~~IiVGidfDC~e~mvyWtDv~g~SI~rasL~G~Ep-----~--ti~-n~~L~--SPEGiAVDh~~Rn~ywtDS~lD-- 1090 (1289)
T KOG1214|consen 1023 PGSIIVGIDFDCRERMVYWTDVAGRSISRASLEGAEP-----E--TIV-NSGLI--SPEGIAVDHIRRNMYWTDSVLD-- 1090 (1289)
T ss_pred ccceeeeeecccccceEEEeecCCCccccccccCCCC-----c--eee-cccCC--Cccceeeeeccceeeeeccccc--
Confidence 44567889999888877665 8778899998875542 2 444 33443 8999999987777898875321
Q ss_pred ccceEEEEECCCCcEEEEEecCCCCCCCCCccceEECCC-CcEEEEeCC--CCeEEEEcCCCceEEEecCCCCCCccccc
Q 020019 122 KYSAVAAYDLSTWNRLFLTQLSGPSDGKSCADDVTVDAE-GNAYVTDVT--GSKIWKVGVKGEFLSIISSPLFTPKEWYK 198 (332)
Q Consensus 122 ~~~~l~~~d~~~g~~~~~~~l~~~~~~~~~~ndiavd~d-G~lyvtd~~--~~~I~~v~~~g~~~~~~~~~~~~~p~~~~ 198 (332)
++ .+..+|.+-.+++.... .-.|.+|++|+= |+||.|||. +..|-+.++||+-.+++-+..
T Consensus 1091 ~I-evA~LdG~~rkvLf~td-------LVNPR~iv~D~~rgnLYwtDWnRenPkIets~mDG~NrRilin~D-------- 1154 (1289)
T KOG1214|consen 1091 KI-EVALLDGSERKVLFYTD-------LVNPRAIVVDPIRGNLYWTDWNRENPKIETSSMDGENRRILINTD-------- 1154 (1289)
T ss_pred hh-heeecCCceeeEEEeec-------ccCcceEEeecccCceeeccccccCCcceeeccCCccceEEeecc--------
Confidence 22 23444443223332222 467888999995 799999996 788999999999776653332
Q ss_pred CccccCeEEEccCc-eEEEEeCCCCeEEEEeCCCCCCccceeEEEEecCCCCCCCCeEEEeCCCeEEEEeCCceEE
Q 020019 199 NLVGLNGIVYHPDG-FLIVIHTFSGNLFKIDIVDGVGEGEEIKLIRVAGGPLSFGDGLELLSPTKLVVAGNPSARL 273 (332)
Q Consensus 199 ~~~~~nGi~~~~dG-~Lyva~~~~~~i~~id~~~~~~~~~~~~~v~~~g~~~~~pdGi~~~~dG~l~va~~~~~~~ 273 (332)
..-|||+.|+|.. .|-+.|.+++|+--+.++.. ..+.+ . ..+.+|-+|.-+.+. +|-+++..+++
T Consensus 1155 -igLPNGLtfdpfs~~LCWvDAGt~rleC~~p~g~-----gRR~i-~--~~LqYPF~itsy~~~-fY~TDWk~n~v 1220 (1289)
T KOG1214|consen 1155 -IGLPNGLTFDPFSKLLCWVDAGTKRLECTLPDGT-----GRRVI-Q--NNLQYPFSITSYADH-FYHTDWKRNGV 1220 (1289)
T ss_pred -cCCCCCceeCcccceeeEEecCCcceeEecCCCC-----cchhh-h--hcccCceeeeecccc-ceeeccccCce
Confidence 2348999999998 99999999999988877732 12212 2 257789999888765 99998654443
|
|
| >KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.74 E-value=6.9e-07 Score=76.74 Aligned_cols=154 Identities=14% Similarity=0.103 Sum_probs=101.0
Q ss_pred CccceEEEeCCCCeEEEEEeCcCC----CccceEEEEECCCCcEEEEEecCCCCCCCCCccceEECCCC-cEEEEeCCCC
Q 020019 97 NGSLGLVLDHPRNRLLVVAADVFG----NKYSAVAAYDLSTWNRLFLTQLSGPSDGKSCADDVTVDAEG-NAYVTDVTGS 171 (332)
Q Consensus 97 ~~~~gi~vd~~~g~l~v~~~~~~~----~~~~~l~~~d~~~g~~~~~~~l~~~~~~~~~~ndiavd~dG-~lyvtd~~~~ 171 (332)
+..+.-.+||+ |+.|+..+.... ...+.|+.|- ..+++...+. ....+|+++.|.+. .+|+.|+.+-
T Consensus 109 nR~NDgkvdP~-Gryy~GtMad~~~~le~~~g~Ly~~~-~~h~v~~i~~------~v~IsNgl~Wd~d~K~fY~iDsln~ 180 (310)
T KOG4499|consen 109 NRLNDGKVDPD-GRYYGGTMADFGDDLEPIGGELYSWL-AGHQVELIWN------CVGISNGLAWDSDAKKFYYIDSLNY 180 (310)
T ss_pred cccccCccCCC-CceeeeeeccccccccccccEEEEec-cCCCceeeeh------hccCCccccccccCcEEEEEccCce
Confidence 35667788996 998887764221 1223444443 3344443322 24678999999986 5899999999
Q ss_pred eE--EEEcCC-CceE---EEecCCCCCCcccccCccccCeEEEccCceEEEEeCCCCeEEEEeCCCCCCccceeEEEEec
Q 020019 172 KI--WKVGVK-GEFL---SIISSPLFTPKEWYKNLVGLNGIVYHPDGFLIVIHTFSGNLFKIDIVDGVGEGEEIKLIRVA 245 (332)
Q Consensus 172 ~I--~~v~~~-g~~~---~~~~~~~~~~p~~~~~~~~~nGi~~~~dG~Lyva~~~~~~i~~id~~~~~~~~~~~~~v~~~ 245 (332)
.| |.+|-. |.+. .+++...- .|. ...-|+|+++|.+|.|||+.+++++|+++|+.+|+ ...++.++
T Consensus 181 ~V~a~dyd~~tG~~snr~~i~dlrk~-~~~---e~~~PDGm~ID~eG~L~Va~~ng~~V~~~dp~tGK----~L~eiklP 252 (310)
T KOG4499|consen 181 EVDAYDYDCPTGDLSNRKVIFDLRKS-QPF---ESLEPDGMTIDTEGNLYVATFNGGTVQKVDPTTGK----ILLEIKLP 252 (310)
T ss_pred EEeeeecCCCcccccCcceeEEeccC-CCc---CCCCCCcceEccCCcEEEEEecCcEEEEECCCCCc----EEEEEEcC
Confidence 99 555433 4332 11111110 111 23468999999999999999999999999999984 57777776
Q ss_pred CCCCCCCCeEEEeCC--CeEEEEeCC
Q 020019 246 GGPLSFGDGLELLSP--TKLVVAGNP 269 (332)
Q Consensus 246 g~~~~~pdGi~~~~d--G~l~va~~~ 269 (332)
. ......++... ..+||+.+.
T Consensus 253 t---~qitsccFgGkn~d~~yvT~aa 275 (310)
T KOG4499|consen 253 T---PQITSCCFGGKNLDILYVTTAA 275 (310)
T ss_pred C---CceEEEEecCCCccEEEEEehh
Confidence 2 34556777643 568888654
|
|
| >KOG1214 consensus Nidogen and related basement membrane protein proteins [Cell wall/membrane/envelope biogenesis; Extracellular structures] | Back alignment and domain information |
|---|
Probab=98.64 E-value=2.2e-06 Score=84.78 Aligned_cols=228 Identities=16% Similarity=0.112 Sum_probs=144.3
Q ss_pred cCCCCEEEEEecCCeEEEEECCCCCCCccceeeeEEecccCcCCCccceEEEeCCCCeEEEEEeCcCCCccceEEEEECC
Q 020019 53 DDSGRRFIVSFLDGGIGQVAVPDDYPPGTVLEEVTLVKDLELTGNGSLGLVLDHPRNRLLVVAADVFGNKYSAVAAYDLS 132 (332)
Q Consensus 53 d~~g~~~~~~~~~g~I~~vd~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~vd~~~g~l~v~~~~~~~~~~~~l~~~d~~ 132 (332)
.+-|..++.. ...+|.++.....++..+ +..+++.-|. .-+.||.+|-....+|..+.... .|.+-.++
T Consensus 987 ~~~gt~LL~a-qg~~I~~lplng~~~~K~--~ak~~l~~p~---~IiVGidfDC~e~mvyWtDv~g~-----SI~rasL~ 1055 (1289)
T KOG1214|consen 987 PSVGTFLLYA-QGQQIGYLPLNGTRLQKD--AAKTLLSLPG---SIIVGIDFDCRERMVYWTDVAGR-----SISRASLE 1055 (1289)
T ss_pred CCCcceEEEe-ccceEEEeecCcchhchh--hhhceEeccc---ceeeeeecccccceEEEeecCCC-----cccccccc
Confidence 3445544333 357788887664433110 1123443232 35789999987667888876432 23333455
Q ss_pred CCcEEEEEecCCCCCCCCCccceEECCCC-cEEEEeCCCCeEEEEcCCCceEEEecCCCCCCcccccCccccCeEEEccC
Q 020019 133 TWNRLFLTQLSGPSDGKSCADDVTVDAEG-NAYVTDVTGSKIWKVGVKGEFLSIISSPLFTPKEWYKNLVGLNGIVYHPD 211 (332)
Q Consensus 133 ~g~~~~~~~l~~~~~~~~~~ndiavd~dG-~lyvtd~~~~~I~~v~~~g~~~~~~~~~~~~~p~~~~~~~~~nGi~~~~d 211 (332)
.++.+..+. ++...|-|||||--+ |+|.+|+....|-+-..+|+...++-.. ++.+|.+|++|+=
T Consensus 1056 G~Ep~ti~n-----~~L~SPEGiAVDh~~Rn~ywtDS~lD~IevA~LdG~~rkvLf~t---------dLVNPR~iv~D~~ 1121 (1289)
T KOG1214|consen 1056 GAEPETIVN-----SGLISPEGIAVDHIRRNMYWTDSVLDKIEVALLDGSERKVLFYT---------DLVNPRAIVVDPI 1121 (1289)
T ss_pred CCCCceeec-----ccCCCccceeeeeccceeeeeccccchhheeecCCceeeEEEee---------cccCcceEEeecc
Confidence 445544433 235778899999876 6999999999988877888866554222 4568899999998
Q ss_pred c-eEEEEeCC--CCeEEEEeCCCCCCccceeEEEEecCCCCCCCCeEEEeCCCeE--EEEeCCceEE-EEcCCCceEEEE
Q 020019 212 G-FLIVIHTF--SGNLFKIDIVDGVGEGEEIKLIRVAGGPLSFGDGLELLSPTKL--VVAGNPSARL-VESSDGWETAAV 285 (332)
Q Consensus 212 G-~Lyva~~~--~~~i~~id~~~~~~~~~~~~~v~~~g~~~~~pdGi~~~~dG~l--~va~~~~~~~-v~~~dg~~~~~~ 285 (332)
+ +||++|++ +-+|-+.++++. -.+|-+. ..+.-|.|+.+++.-++ ||-... .++ -..++|....++
T Consensus 1122 rgnLYwtDWnRenPkIets~mDG~------NrRilin-~DigLPNGLtfdpfs~~LCWvDAGt-~rleC~~p~g~gRR~i 1193 (1289)
T KOG1214|consen 1122 RGNLYWTDWNRENPKIETSSMDGE------NRRILIN-TDIGLPNGLTFDPFSKLLCWVDAGT-KRLECTLPDGTGRRVI 1193 (1289)
T ss_pred cCceeeccccccCCcceeeccCCc------cceEEee-cccCCCCCceeCcccceeeEEecCC-cceeEecCCCCcchhh
Confidence 7 99999996 457888888743 1223333 46788999999988553 443222 121 235666322233
Q ss_pred EeeecCCCcccceEEEEECCeEEEEEecCcccc
Q 020019 286 VAKFSGPVHRLATAATVKDGRVYLNHMLGFGYP 318 (332)
Q Consensus 286 ~~~~~~~~~~~pt~va~~~g~lyv~~~~g~~~~ 318 (332)
.. .+++|-+++-.++.+|-+.|..+.+-
T Consensus 1194 ~~-----~LqYPF~itsy~~~fY~TDWk~n~vv 1221 (1289)
T KOG1214|consen 1194 QN-----NLQYPFSITSYADHFYHTDWKRNGVV 1221 (1289)
T ss_pred hh-----cccCceeeeeccccceeeccccCceE
Confidence 33 37888888876666888887776643
|
|
| >KOG1520 consensus Predicted alkaloid synthase/Surface mucin Hemomucin [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.61 E-value=3.2e-07 Score=84.37 Aligned_cols=146 Identities=22% Similarity=0.306 Sum_probs=96.2
Q ss_pred CCCccceEECCCC-cEEEEeCCCCeEEEEcCCCceEEEecCCCCCCcccccCccccCeEEEccCceEEEEeCC-------
Q 020019 149 KSCADDVTVDAEG-NAYVTDVTGSKIWKVGVKGEFLSIISSPLFTPKEWYKNLVGLNGIVYHPDGFLIVIHTF------- 220 (332)
Q Consensus 149 ~~~~ndiavd~dG-~lyvtd~~~~~I~~v~~~g~~~~~~~~~~~~~p~~~~~~~~~nGi~~~~dG~Lyva~~~------- 220 (332)
..+|-|++++..| ++||+|.. -.+++++++|+....+.++.... .+...|++.++++|.+|++|+.
T Consensus 114 CGRPLGl~f~~~ggdL~VaDAY-lGL~~V~p~g~~a~~l~~~~~G~-----~~kf~N~ldI~~~g~vyFTDSSsk~~~rd 187 (376)
T KOG1520|consen 114 CGRPLGIRFDKKGGDLYVADAY-LGLLKVGPEGGLAELLADEAEGK-----PFKFLNDLDIDPEGVVYFTDSSSKYDRRD 187 (376)
T ss_pred cCCcceEEeccCCCeEEEEecc-eeeEEECCCCCcceeccccccCe-----eeeecCceeEcCCCeEEEeccccccchhh
Confidence 4899999999996 89999976 45789999977544433322222 2356899999998899999984
Q ss_pred ----------CCeEEEEeCCCCCCccceeEEEEecCCCCCCCCeEEEeCCCeEE-EEeCCceEE--E-EcCCCceEEEEE
Q 020019 221 ----------SGNLFKIDIVDGVGEGEEIKLIRVAGGPLSFGDGLELLSPTKLV-VAGNPSARL--V-ESSDGWETAAVV 286 (332)
Q Consensus 221 ----------~~~i~~id~~~~~~~~~~~~~v~~~g~~~~~pdGi~~~~dG~l~-va~~~~~~~--v-~~~dg~~~~~~~ 286 (332)
+||++|+|+.+. ..+ +-. ..+..|.|+++.+|+... +++....++ + .......+.++.
T Consensus 188 ~~~a~l~g~~~GRl~~YD~~tK-----~~~-VLl--d~L~F~NGlaLS~d~sfvl~~Et~~~ri~rywi~g~k~gt~EvF 259 (376)
T KOG1520|consen 188 FVFAALEGDPTGRLFRYDPSTK-----VTK-VLL--DGLYFPNGLALSPDGSFVLVAETTTARIKRYWIKGPKAGTSEVF 259 (376)
T ss_pred eEEeeecCCCccceEEecCccc-----chh-hhh--hcccccccccCCCCCCEEEEEeeccceeeeeEecCCccCchhhH
Confidence 578888888765 222 223 357889999999997754 444322221 1 222111111222
Q ss_pred eeecCCCcccceEEEE-ECCeEEEEE
Q 020019 287 AKFSGPVHRLATAATV-KDGRVYLNH 311 (332)
Q Consensus 287 ~~~~~~~~~~pt~va~-~~g~lyv~~ 311 (332)
.. .--.+|+++.. .+|..||+-
T Consensus 260 a~---~LPG~PDNIR~~~~G~fWVal 282 (376)
T KOG1520|consen 260 AE---GLPGYPDNIRRDSTGHFWVAL 282 (376)
T ss_pred hh---cCCCCCcceeECCCCCEEEEE
Confidence 21 11246899999 889999954
|
|
| >COG3204 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=98.58 E-value=2e-05 Score=70.09 Aligned_cols=198 Identities=16% Similarity=0.171 Sum_probs=122.9
Q ss_pred ccceEEEeCCCCeEEEEEeCcCCCccceEEEEECCCCcEEEEEecCCCCCCCCCccceEECCCCcEEEEeCCCCeEEEE-
Q 020019 98 GSLGLVLDHPRNRLLVVAADVFGNKYSAVAAYDLSTWNRLFLTQLSGPSDGKSCADDVTVDAEGNAYVTDVTGSKIWKV- 176 (332)
Q Consensus 98 ~~~gi~vd~~~g~l~v~~~~~~~~~~~~l~~~d~~~g~~~~~~~l~~~~~~~~~~ndiavd~dG~lyvtd~~~~~I~~v- 176 (332)
...+++.+|+++.||.+.+. ...+...+. .|++...+++.+ .+-|-.|..-.+|..-++|....+++.+
T Consensus 87 nvS~LTynp~~rtLFav~n~-----p~~iVElt~-~GdlirtiPL~g----~~DpE~Ieyig~n~fvi~dER~~~l~~~~ 156 (316)
T COG3204 87 NVSSLTYNPDTRTLFAVTNK-----PAAIVELTK-EGDLIRTIPLTG----FSDPETIEYIGGNQFVIVDERDRALYLFT 156 (316)
T ss_pred cccceeeCCCcceEEEecCC-----CceEEEEec-CCceEEEecccc----cCChhHeEEecCCEEEEEehhcceEEEEE
Confidence 47799999998999988763 456777776 489988888742 4567788888888777899988887764
Q ss_pred -cCCCceEEEec--CCCCCCcccccCccccCeEEEccCc-eEEEEeCCC-CeEEEEeCCCCCCccceeEEEEecCC--C-
Q 020019 177 -GVKGEFLSIIS--SPLFTPKEWYKNLVGLNGIVYHPDG-FLIVIHTFS-GNLFKIDIVDGVGEGEEIKLIRVAGG--P- 248 (332)
Q Consensus 177 -~~~g~~~~~~~--~~~~~~p~~~~~~~~~nGi~~~~dG-~Lyva~~~~-~~i~~id~~~~~~~~~~~~~v~~~g~--~- 248 (332)
+++++...... -+....+. .-.|--|+++++.. .||++...+ -+||.++-..... .+.....+.. +
T Consensus 157 vd~~t~~~~~~~~~i~L~~~~k---~N~GfEGlA~d~~~~~l~~aKEr~P~~I~~~~~~~~~l---~~~~~~~~~~~~~~ 230 (316)
T COG3204 157 VDADTTVISAKVQKIPLGTTNK---KNKGFEGLAWDPVDHRLFVAKERNPIGIFEVTQSPSSL---SVHASLDPTADRDL 230 (316)
T ss_pred EcCCccEEeccceEEeccccCC---CCcCceeeecCCCCceEEEEEccCCcEEEEEecCCccc---ccccccCcccccce
Confidence 45555443321 01111111 13567799999998 999997744 3678877432111 0110011100 1
Q ss_pred -CCCCCeEEEeCC-CeEEEEeCCceEEEE-cCCCceEEEEE--eeec--CCCcccceEEEE-ECCeEEEEE
Q 020019 249 -LSFGDGLELLSP-TKLVVAGNPSARLVE-SSDGWETAAVV--AKFS--GPVHRLATAATV-KDGRVYLNH 311 (332)
Q Consensus 249 -~~~pdGi~~~~d-G~l~va~~~~~~~v~-~~dg~~~~~~~--~~~~--~~~~~~pt~va~-~~g~lyv~~ 311 (332)
+.-..|+.+++. |.|+|-...+..++. ..+|.....+. +... .....++.++++ ++|.|||.+
T Consensus 231 f~~DvSgl~~~~~~~~LLVLS~ESr~l~Evd~~G~~~~~lsL~~g~~gL~~dipqaEGiamDd~g~lYIvS 301 (316)
T COG3204 231 FVLDVSGLEFNAITNSLLVLSDESRRLLEVDLSGEVIELLSLTKGNHGLSSDIPQAEGIAMDDDGNLYIVS 301 (316)
T ss_pred EeeccccceecCCCCcEEEEecCCceEEEEecCCCeeeeEEeccCCCCCcccCCCcceeEECCCCCEEEEe
Confidence 234568999864 788888766555444 34452222221 2211 123677899999 889999954
|
|
| >COG3823 Glutamine cyclotransferase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.55 E-value=3.2e-05 Score=65.52 Aligned_cols=188 Identities=15% Similarity=0.119 Sum_probs=116.4
Q ss_pred CCccccceEEcCCCCEEEEE--ecCCeEEEEECCCCCCCccceeeeEEecccCcCCCccceEEEeCCCCeEEEEEeCcCC
Q 020019 43 SSFFRECAKWDDSGRRFIVS--FLDGGIGQVAVPDDYPPGTVLEEVTLVKDLELTGNGSLGLVLDHPRNRLLVVAADVFG 120 (332)
Q Consensus 43 ~~~~pegia~d~~g~~~~~~--~~~g~I~~vd~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~vd~~~g~l~v~~~~~~~ 120 (332)
...+..|+.++.. .+|.+. ....+|.+.+..+++. ..+ ..+. .|.. -..||..-. +.+|.....
T Consensus 44 s~sfTQGL~~~~g-~i~esTG~yg~S~ir~~~L~~gq~---~~s-~~l~-~~~~---FgEGit~~g--d~~y~LTw~--- 109 (262)
T COG3823 44 STSFTQGLEYLDG-HILESTGLYGFSKIRVSDLTTGQE---IFS-EKLA-PDTV---FGEGITKLG--DYFYQLTWK--- 109 (262)
T ss_pred hhhhhcceeeeCC-EEEEeccccccceeEEEeccCceE---EEE-eecC-Cccc---cccceeecc--ceEEEEEec---
Confidence 3447789998764 555554 3356799999987762 111 1111 1222 234677654 688988762
Q ss_pred CccceEEEEECCCCcEEEEEecCCCCCCCCCccceEECCCCcEEEEeCCCCeEEEEcCCC-----ceEEEecCCCCCCcc
Q 020019 121 NKYSAVAAYDLSTWNRLFLTQLSGPSDGKSCADDVTVDAEGNAYVTDVTGSKIWKVGVKG-----EFLSIISSPLFTPKE 195 (332)
Q Consensus 121 ~~~~~l~~~d~~~g~~~~~~~l~~~~~~~~~~ndiavd~dG~lyvtd~~~~~I~~v~~~g-----~~~~~~~~~~~~~p~ 195 (332)
.+.-++||.++-+....+..++.+ =+++-|.+ +++-+| ++..++..||+. +..+.. +. .|
T Consensus 110 --egvaf~~d~~t~~~lg~~~y~GeG------WgLt~d~~-~Limsd-GsatL~frdP~tfa~~~~v~VT~-~g---~p- 174 (262)
T COG3823 110 --EGVAFKYDADTLEELGRFSYEGEG------WGLTSDDK-NLIMSD-GSATLQFRDPKTFAELDTVQVTD-DG---VP- 174 (262)
T ss_pred --cceeEEEChHHhhhhcccccCCcc------eeeecCCc-ceEeeC-CceEEEecCHHHhhhcceEEEEE-CC---ee-
Confidence 445678898876655444443211 23444433 466665 456666667652 222211 11 12
Q ss_pred cccCccccCeEEEccCceEEEEeCCCCeEEEEeCCCCCCccceeEEEEecC---------CCCCCCCeEEEeCC-CeEEE
Q 020019 196 WYKNLVGLNGIVYHPDGFLIVIHTFSGNLFKIDIVDGVGEGEEIKLIRVAG---------GPLSFGDGLELLSP-TKLVV 265 (332)
Q Consensus 196 ~~~~~~~~nGi~~~~dG~Lyva~~~~~~i~~id~~~~~~~~~~~~~v~~~g---------~~~~~pdGi~~~~d-G~l~v 265 (332)
....|-+.+- ||.||..-+.+.+|.||++++|+ .+..+.+++ .....++|||.+++ +++|+
T Consensus 175 ----v~~LNELE~V-dG~lyANVw~t~~I~rI~p~sGr----V~~widlS~L~~~~~~~~~~~nvlNGIA~~~~~~r~~i 245 (262)
T COG3823 175 ----VSKLNELEWV-DGELYANVWQTTRIARIDPDSGR----VVAWIDLSGLLKELNLDKSNDNVLNGIAHDPQQDRFLI 245 (262)
T ss_pred ----cccccceeee-ccEEEEeeeeecceEEEcCCCCc----EEEEEEccCCchhcCccccccccccceeecCcCCeEEE
Confidence 2356788886 89999999999999999999984 566666543 12346899999987 58999
Q ss_pred EeC
Q 020019 266 AGN 268 (332)
Q Consensus 266 a~~ 268 (332)
++-
T Consensus 246 TGK 248 (262)
T COG3823 246 TGK 248 (262)
T ss_pred ecC
Confidence 973
|
|
| >cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto | Back alignment and domain information |
|---|
Probab=98.53 E-value=0.00028 Score=61.78 Aligned_cols=218 Identities=15% Similarity=0.188 Sum_probs=134.6
Q ss_pred cceEEcCCCCEEEEEecCCeEEEEECCCCCCCccceeeeEEecccCcCCCccceEEEeCCCCeEEEEEeCcCCCccceEE
Q 020019 48 ECAKWDDSGRRFIVSFLDGGIGQVAVPDDYPPGTVLEEVTLVKDLELTGNGSLGLVLDHPRNRLLVVAADVFGNKYSAVA 127 (332)
Q Consensus 48 egia~d~~g~~~~~~~~~g~I~~vd~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~vd~~~g~l~v~~~~~~~~~~~~l~ 127 (332)
..+.+.++++.+++...++.|..++..+++. .. .+.... .....+.+.++ +.++++... .+.+.
T Consensus 55 ~~~~~~~~~~~l~~~~~~~~i~i~~~~~~~~----~~--~~~~~~----~~i~~~~~~~~-~~~~~~~~~-----~~~i~ 118 (289)
T cd00200 55 RDVAASADGTYLASGSSDKTIRLWDLETGEC----VR--TLTGHT----SYVSSVAFSPD-GRILSSSSR-----DKTIK 118 (289)
T ss_pred eEEEECCCCCEEEEEcCCCeEEEEEcCcccc----eE--EEeccC----CcEEEEEEcCC-CCEEEEecC-----CCeEE
Confidence 4788999987777776689999999876542 11 222111 25678889886 666666541 35788
Q ss_pred EEECCCCcEEEEEecCCCCCCCCCccceEECCCCcEEEEeCCCCeEEEEcCC-CceEEEecCCCCCCcccccCccccCeE
Q 020019 128 AYDLSTWNRLFLTQLSGPSDGKSCADDVTVDAEGNAYVTDVTGSKIWKVGVK-GEFLSIISSPLFTPKEWYKNLVGLNGI 206 (332)
Q Consensus 128 ~~d~~~g~~~~~~~l~~~~~~~~~~ndiavd~dG~lyvtd~~~~~I~~v~~~-g~~~~~~~~~~~~~p~~~~~~~~~nGi 206 (332)
.||.++++....... .......+++++++.++++....+.|..++.. ++....+.. .......+
T Consensus 119 ~~~~~~~~~~~~~~~-----~~~~i~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~----------~~~~i~~~ 183 (289)
T cd00200 119 VWDVETGKCLTTLRG-----HTDWVNSVAFSPDGTFVASSSQDGTIKLWDLRTGKCVATLTG----------HTGEVNSV 183 (289)
T ss_pred EEECCCcEEEEEecc-----CCCcEEEEEEcCcCCEEEEEcCCCcEEEEEccccccceeEec----------CccccceE
Confidence 999987665543331 12457789999998777776667888888876 443322211 11245789
Q ss_pred EEccCc-eEEEEeCCCCeEEEEeCCCCCCccceeEEEEecCCCCCCCCeEEEeCCCeEEEEeC--CceEEEEcCCCceEE
Q 020019 207 VYHPDG-FLIVIHTFSGNLFKIDIVDGVGEGEEIKLIRVAGGPLSFGDGLELLSPTKLVVAGN--PSARLVESSDGWETA 283 (332)
Q Consensus 207 ~~~~dG-~Lyva~~~~~~i~~id~~~~~~~~~~~~~v~~~g~~~~~pdGi~~~~dG~l~va~~--~~~~~v~~~dg~~~~ 283 (332)
++++++ .++++.. .+.|..++...++ .+..+.. .......+++++++.++++.. +...+.....+
T Consensus 184 ~~~~~~~~l~~~~~-~~~i~i~d~~~~~----~~~~~~~---~~~~i~~~~~~~~~~~~~~~~~~~~i~i~~~~~~---- 251 (289)
T cd00200 184 AFSPDGEKLLSSSS-DGTIKLWDLSTGK----CLGTLRG---HENGVNSVAFSPDGYLLASGSEDGTIRVWDLRTG---- 251 (289)
T ss_pred EECCCcCEEEEecC-CCcEEEEECCCCc----eecchhh---cCCceEEEEEcCCCcEEEEEcCCCcEEEEEcCCc----
Confidence 999999 7776655 7889889988652 3333321 113567889999888888864 33333333334
Q ss_pred EEEeeecCCCcccceEEEE-ECCeEEE
Q 020019 284 AVVAKFSGPVHRLATAATV-KDGRVYL 309 (332)
Q Consensus 284 ~~~~~~~~~~~~~pt~va~-~~g~lyv 309 (332)
.....+... ....+++++ .++.+++
T Consensus 252 ~~~~~~~~~-~~~i~~~~~~~~~~~l~ 277 (289)
T cd00200 252 ECVQTLSGH-TNSVTSLAWSPDGKRLA 277 (289)
T ss_pred eeEEEcccc-CCcEEEEEECCCCCEEE
Confidence 222222211 223567777 4444444
|
|
| >PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2 | Back alignment and domain information |
|---|
Probab=98.52 E-value=5.6e-06 Score=73.42 Aligned_cols=165 Identities=18% Similarity=0.232 Sum_probs=102.5
Q ss_pred ccccceEEcCCCCEEEEEecCCeEEEEECCCCCCCccceeeeEEecccCcCCCccceEEEeCCCCeEEEEEeCcCCCccc
Q 020019 45 FFRECAKWDDSGRRFIVSFLDGGIGQVAVPDDYPPGTVLEEVTLVKDLELTGNGSLGLVLDHPRNRLLVVAADVFGNKYS 124 (332)
Q Consensus 45 ~~pegia~d~~g~~~~~~~~~g~I~~vd~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~vd~~~g~l~v~~~~~~~~~~~ 124 (332)
.+.||+++..+ ++|...-.++...++|+.+-+. .. ++ .-++ -..||+.|. ..||++++ .+
T Consensus 90 ~FgEGit~~~d-~l~qLTWk~~~~f~yd~~tl~~----~~--~~-~y~~----EGWGLt~dg--~~Li~SDG------S~ 149 (264)
T PF05096_consen 90 YFGEGITILGD-KLYQLTWKEGTGFVYDPNTLKK----IG--TF-PYPG----EGWGLTSDG--KRLIMSDG------SS 149 (264)
T ss_dssp --EEEEEEETT-EEEEEESSSSEEEEEETTTTEE----EE--EE-E-SS----S--EEEECS--SCEEEE-S------SS
T ss_pred ccceeEEEECC-EEEEEEecCCeEEEEccccceE----EE--EE-ecCC----cceEEEcCC--CEEEEECC------cc
Confidence 36678887753 4665566678888998875441 12 22 1222 357999775 68999985 46
Q ss_pred eEEEEECCCCcEEEEEecCCCCCCCCCccceEECCCCcEEEEeCCCCeEEEEcCC-CceEEEecCCCCCCc-----cccc
Q 020019 125 AVAAYDLSTWNRLFLTQLSGPSDGKSCADDVTVDAEGNAYVTDVTGSKIWKVGVK-GEFLSIISSPLFTPK-----EWYK 198 (332)
Q Consensus 125 ~l~~~d~~~g~~~~~~~l~~~~~~~~~~ndiavd~dG~lyvtd~~~~~I~~v~~~-g~~~~~~~~~~~~~p-----~~~~ 198 (332)
+|+.+|+++.+....+++...+......|-+-.- +|.||.--+....|.+|||. |+...+++-..+..+ ...+
T Consensus 150 ~L~~~dP~~f~~~~~i~V~~~g~pv~~LNELE~i-~G~IyANVW~td~I~~Idp~tG~V~~~iDls~L~~~~~~~~~~~~ 228 (264)
T PF05096_consen 150 RLYFLDPETFKEVRTIQVTDNGRPVSNLNELEYI-NGKIYANVWQTDRIVRIDPETGKVVGWIDLSGLRPEVGRDKSRQP 228 (264)
T ss_dssp EEEEE-TTT-SEEEEEE-EETTEE---EEEEEEE-TTEEEEEETTSSEEEEEETTT-BEEEEEE-HHHHHHHTSTTST--
T ss_pred ceEEECCcccceEEEEEEEECCEECCCcEeEEEE-cCEEEEEeCCCCeEEEEeCCCCeEEEEEEhhHhhhcccccccccc
Confidence 8999999988877776663222224678888775 78999999999999999997 777766532211100 0012
Q ss_pred CccccCeEEEccCc-eEEEEeCCCCeEEEEeCC
Q 020019 199 NLVGLNGIVYHPDG-FLIVIHTFSGNLFKIDIV 230 (332)
Q Consensus 199 ~~~~~nGi~~~~dG-~Lyva~~~~~~i~~id~~ 230 (332)
...-.||||++++. ++||+--.=.++|+|.+.
T Consensus 229 ~~dVLNGIAyd~~~~~l~vTGK~Wp~lyeV~l~ 261 (264)
T PF05096_consen 229 DDDVLNGIAYDPETDRLFVTGKLWPKLYEVKLV 261 (264)
T ss_dssp TTS-EEEEEEETTTTEEEEEETT-SEEEEEEEE
T ss_pred cCCeeEeEeEeCCCCEEEEEeCCCCceEEEEEE
Confidence 24568999999998 999987666678887653
|
3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X. |
| >TIGR03606 non_repeat_PQQ dehydrogenase, PQQ-dependent, s-GDH family | Back alignment and domain information |
|---|
Probab=98.52 E-value=5.9e-06 Score=79.36 Aligned_cols=158 Identities=12% Similarity=0.131 Sum_probs=96.9
Q ss_pred ccceEEEeCCCCeEEEEEeCcCCCccceEEEEECCCCcEEEEEecCCCC--CCCCCccceEECCC-------CcEEEEeC
Q 020019 98 GSLGLVLDHPRNRLLVVAADVFGNKYSAVAAYDLSTWNRLFLTQLSGPS--DGKSCADDVTVDAE-------GNAYVTDV 168 (332)
Q Consensus 98 ~~~gi~vd~~~g~l~v~~~~~~~~~~~~l~~~d~~~g~~~~~~~l~~~~--~~~~~~ndiavd~d-------G~lyvtd~ 168 (332)
.|.+|++.++ |++||+... .++|.+++..++.......++... .+...+.||+++|+ +.||++-+
T Consensus 31 ~Pw~maflPD-G~llVtER~-----~G~I~~v~~~~~~~~~~~~l~~v~~~~ge~GLlglal~PdF~~~~~n~~lYvsyt 104 (454)
T TIGR03606 31 KPWALLWGPD-NQLWVTERA-----TGKILRVNPETGEVKVVFTLPEIVNDAQHNGLLGLALHPDFMQEKGNPYVYISYT 104 (454)
T ss_pred CceEEEEcCC-CeEEEEEec-----CCEEEEEeCCCCceeeeecCCceeccCCCCceeeEEECCCccccCCCcEEEEEEe
Confidence 7999999997 999999752 367888887666543333342111 13567899999976 25898742
Q ss_pred C---------CCeEEEEcCC--C-ce---EEEecCCCCCCcccccCccccCeEEEccCceEEEEeCC-------------
Q 020019 169 T---------GSKIWKVGVK--G-EF---LSIISSPLFTPKEWYKNLVGLNGIVYHPDGFLIVIHTF------------- 220 (332)
Q Consensus 169 ~---------~~~I~~v~~~--g-~~---~~~~~~~~~~~p~~~~~~~~~nGi~~~~dG~Lyva~~~------------- 220 (332)
. ..+|.|+..+ + +. ..++.. .|. ...=.-..|+|+|||.|||+--.
T Consensus 105 ~~~~~~~~~~~~~I~R~~l~~~~~~l~~~~~Il~~----lP~--~~~H~GgrI~FgPDG~LYVs~GD~g~~~~~n~~~~~ 178 (454)
T TIGR03606 105 YKNGDKELPNHTKIVRYTYDKSTQTLEKPVDLLAG----LPA--GNDHNGGRLVFGPDGKIYYTIGEQGRNQGANFFLPN 178 (454)
T ss_pred ccCCCCCccCCcEEEEEEecCCCCccccceEEEec----CCC--CCCcCCceEEECCCCcEEEEECCCCCCCcccccCcc
Confidence 1 4578776543 1 11 122211 010 00112347889999999996443
Q ss_pred -------------------CCeEEEEeCCCCCCccce-----eEEEEecCCCCCCCCeEEEeCCCeEEEEeCC
Q 020019 221 -------------------SGNLFKIDIVDGVGEGEE-----IKLIRVAGGPLSFGDGLELLSPTKLVVAGNP 269 (332)
Q Consensus 221 -------------------~~~i~~id~~~~~~~~~~-----~~~v~~~g~~~~~pdGi~~~~dG~l~va~~~ 269 (332)
.++|+||+++..-..+.+ ..+|-.. .+..|.||+++++|+||++++.
T Consensus 179 ~aQ~~~~~~~~~~~d~~~~~GkILRin~DGsiP~dNPf~~g~~~eIyA~--G~RNp~Gla~dp~G~Lw~~e~G 249 (454)
T TIGR03606 179 QAQHTPTQQELNGKDYHAYMGKVLRLNLDGSIPKDNPSINGVVSHIFTY--GHRNPQGLAFTPDGTLYASEQG 249 (454)
T ss_pred hhccccccccccccCcccCceEEEEEcCCCCCCCCCCccCCCcceEEEE--eccccceeEECCCCCEEEEecC
Confidence 237899998742111111 1223332 3578999999999999999753
|
PQQ, or pyrroloquinoline-quinone, serves as a cofactor for a number of sugar and alcohol dehydrogenases in a limited number of bacterial species. Most characterized PQQ-dependent enzymes have multiple repeats of a sequence region described by pfam01011 (PQQ enzyme repeat), but this protein family in unusual in lacking that repeat. Below the noise cutoff are related proteins mostly from species that lack PQQ biosynthesis. |
| >cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto | Back alignment and domain information |
|---|
Probab=98.51 E-value=0.00043 Score=60.63 Aligned_cols=185 Identities=15% Similarity=0.160 Sum_probs=118.2
Q ss_pred cccceEEcCCCCEEEEEecCCeEEEEECCCCCCCccceeeeEEecccCcCCCccceEEEeCCCCeEEEEEeCcCCCccce
Q 020019 46 FRECAKWDDSGRRFIVSFLDGGIGQVAVPDDYPPGTVLEEVTLVKDLELTGNGSLGLVLDHPRNRLLVVAADVFGNKYSA 125 (332)
Q Consensus 46 ~pegia~d~~g~~~~~~~~~g~I~~vd~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~vd~~~g~l~v~~~~~~~~~~~~ 125 (332)
....+.++++++.+++...+|.|..++..+++. .. .... .. .....+.+.++...++++.. .+.
T Consensus 11 ~i~~~~~~~~~~~l~~~~~~g~i~i~~~~~~~~----~~--~~~~-~~---~~i~~~~~~~~~~~l~~~~~------~~~ 74 (289)
T cd00200 11 GVTCVAFSPDGKLLATGSGDGTIKVWDLETGEL----LR--TLKG-HT---GPVRDVAASADGTYLASGSS------DKT 74 (289)
T ss_pred CEEEEEEcCCCCEEEEeecCcEEEEEEeeCCCc----EE--EEec-CC---cceeEEEECCCCCEEEEEcC------CCe
Confidence 456789999988887776688998888775542 11 2211 11 13357888886335555543 357
Q ss_pred EEEEECCCCcEEEEEecCCCCCCCCCccceEECCCCcEEEEeCCCCeEEEEcCC-CceEEEecCCCCCCcccccCccccC
Q 020019 126 VAAYDLSTWNRLFLTQLSGPSDGKSCADDVTVDAEGNAYVTDVTGSKIWKVGVK-GEFLSIISSPLFTPKEWYKNLVGLN 204 (332)
Q Consensus 126 l~~~d~~~g~~~~~~~l~~~~~~~~~~ndiavd~dG~lyvtd~~~~~I~~v~~~-g~~~~~~~~~~~~~p~~~~~~~~~n 204 (332)
+.+||.++++....... .......+.+.++++++++....+.|..++.. ++....+.. ......
T Consensus 75 i~i~~~~~~~~~~~~~~-----~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~----------~~~~i~ 139 (289)
T cd00200 75 IRLWDLETGECVRTLTG-----HTSYVSSVAFSPDGRILSSSSRDKTIKVWDVETGKCLTTLRG----------HTDWVN 139 (289)
T ss_pred EEEEEcCcccceEEEec-----cCCcEEEEEEcCCCCEEEEecCCCeEEEEECCCcEEEEEecc----------CCCcEE
Confidence 88999987654433321 12356779999998888887778888888876 444332221 112457
Q ss_pred eEEEccCceEEEEeCCCCeEEEEeCCCCCCccceeEEEEecCCCCCCCCeEEEeCCC-eEEEEeC
Q 020019 205 GIVYHPDGFLIVIHTFSGNLFKIDIVDGVGEGEEIKLIRVAGGPLSFGDGLELLSPT-KLVVAGN 268 (332)
Q Consensus 205 Gi~~~~dG~Lyva~~~~~~i~~id~~~~~~~~~~~~~v~~~g~~~~~pdGi~~~~dG-~l~va~~ 268 (332)
.+++++++.++++....+.|..++...++ ....+.. .......+.+.+++ .++++..
T Consensus 140 ~~~~~~~~~~l~~~~~~~~i~i~d~~~~~----~~~~~~~---~~~~i~~~~~~~~~~~l~~~~~ 197 (289)
T cd00200 140 SVAFSPDGTFVASSSQDGTIKLWDLRTGK----CVATLTG---HTGEVNSVAFSPDGEKLLSSSS 197 (289)
T ss_pred EEEEcCcCCEEEEEcCCCcEEEEEccccc----cceeEec---CccccceEEECCCcCEEEEecC
Confidence 89999988555555567789889887552 3333332 22356788999987 4555553
|
|
| >PRK02888 nitrous-oxide reductase; Validated | Back alignment and domain information |
|---|
Probab=98.50 E-value=1.7e-05 Score=78.00 Aligned_cols=192 Identities=14% Similarity=0.125 Sum_probs=113.2
Q ss_pred CCCEEEEE-ecCCeEEEEECCCCCCCccceeeeEEecccCcCCCccceEEEe--CCCCeEEEEEeCcC--C---------
Q 020019 55 SGRRFIVS-FLDGGIGQVAVPDDYPPGTVLEEVTLVKDLELTGNGSLGLVLD--HPRNRLLVVAADVF--G--------- 120 (332)
Q Consensus 55 ~g~~~~~~-~~~g~I~~vd~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~vd--~~~g~l~v~~~~~~--~--------- 120 (332)
||+.+|.+ -.+.||.||+.+.-++. ..+.-|... +..|+++. |+++ ||..+... +
T Consensus 140 dGr~~findk~n~Rvari~l~~~~~~-------~i~~iPn~~--~~Hg~~~~~~p~t~--yv~~~~e~~~PlpnDGk~l~ 208 (635)
T PRK02888 140 DGRYLFINDKANTRVARIRLDVMKCD-------KITELPNVQ--GIHGLRPQKIPRTG--YVFCNGEFRIPLPNDGKDLD 208 (635)
T ss_pred ceeEEEEecCCCcceEEEECccEeec-------eeEeCCCcc--CccccCccccCCcc--EEEeCcccccccCCCCCEee
Confidence 56666666 55789999998865531 233334332 44566655 3323 33332211 0
Q ss_pred ---CccceEEEEECCCCcEEEEEecCCCCCCCCCccceEECCCCc-EEEEeCC--------------CCeEEEEcC----
Q 020019 121 ---NKYSAVAAYDLSTWNRLFLTQLSGPSDGKSCADDVTVDAEGN-AYVTDVT--------------GSKIWKVGV---- 178 (332)
Q Consensus 121 ---~~~~~l~~~d~~~g~~~~~~~l~~~~~~~~~~ndiavd~dG~-lyvtd~~--------------~~~I~~v~~---- 178 (332)
.-.+-+.++|.++.++.+.+.+. .+|..++++++|. +|+|... ...+..|+.
T Consensus 209 ~~~ey~~~vSvID~etmeV~~qV~Vd------gnpd~v~~spdGk~afvTsyNsE~G~tl~em~a~e~d~~vvfni~~ie 282 (635)
T PRK02888 209 DPKKYRSLFTAVDAETMEVAWQVMVD------GNLDNVDTDYDGKYAFSTCYNSEEGVTLAEMMAAERDWVVVFNIARIE 282 (635)
T ss_pred cccceeEEEEEEECccceEEEEEEeC------CCcccceECCCCCEEEEeccCcccCcceeeeccccCceEEEEchHHHH
Confidence 01234567788876666655552 3788899999985 7888521 112333332
Q ss_pred ----CCceEE-------EecCCC-----CCCcccccCccccCeEEEccCc-eEEEEeCCCCeEEEEeCCCCC------Cc
Q 020019 179 ----KGEFLS-------IISSPL-----FTPKEWYKNLVGLNGIVYHPDG-FLIVIHTFSGNLFKIDIVDGV------GE 235 (332)
Q Consensus 179 ----~g~~~~-------~~~~~~-----~~~p~~~~~~~~~nGi~~~~dG-~Lyva~~~~~~i~~id~~~~~------~~ 235 (332)
+|+... +++... ...-..++....|.|+.++||| ++|+++..++.+..||.++.+ +.
T Consensus 283 a~vkdGK~~~V~gn~V~VID~~t~~~~~~~v~~yIPVGKsPHGV~vSPDGkylyVanklS~tVSVIDv~k~k~~~~~~~~ 362 (635)
T PRK02888 283 EAVKAGKFKTIGGSKVPVVDGRKAANAGSALTRYVPVPKNPHGVNTSPDGKYFIANGKLSPTVTVIDVRKLDDLFDGKIK 362 (635)
T ss_pred HhhhCCCEEEECCCEEEEEECCccccCCcceEEEEECCCCccceEECCCCCEEEEeCCCCCcEEEEEChhhhhhhhccCC
Confidence 232211 111111 1111123456789999999999 999999999999999988632 10
Q ss_pred --cceeEEEEecCCCCCCCCeEEEeCCCeEEEEe
Q 020019 236 --GEEIKLIRVAGGPLSFGDGLELLSPTKLVVAG 267 (332)
Q Consensus 236 --~~~~~~v~~~g~~~~~pdGi~~~~dG~l~va~ 267 (332)
...+.++++. .+|-..++|++|+.|++-
T Consensus 363 ~~~~vvaevevG----lGPLHTaFDg~G~aytsl 392 (635)
T PRK02888 363 PRDAVVAEPELG----LGPLHTAFDGRGNAYTTL 392 (635)
T ss_pred ccceEEEeeccC----CCcceEEECCCCCEEEeE
Confidence 1122223321 578899999999999995
|
|
| >COG3204 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=98.46 E-value=0.00011 Score=65.63 Aligned_cols=209 Identities=12% Similarity=0.161 Sum_probs=125.3
Q ss_pred cccceEEcCCCCEEEEEec-CCeEEEEECCCCCCCccceeeeEEecccCcCCCccceEEEeCCCCeEEEEEeCcCCCccc
Q 020019 46 FRECAKWDDSGRRFIVSFL-DGGIGQVAVPDDYPPGTVLEEVTLVKDLELTGNGSLGLVLDHPRNRLLVVAADVFGNKYS 124 (332)
Q Consensus 46 ~pegia~d~~g~~~~~~~~-~g~I~~vd~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~vd~~~g~l~v~~~~~~~~~~~ 124 (332)
...+++|+|+.+.+|+... ...|.+++.. |+. +. +.. -+++ .-|.+|+.-.. |...+++. +..
T Consensus 87 nvS~LTynp~~rtLFav~n~p~~iVElt~~-Gdl----ir--tiP-L~g~--~DpE~Ieyig~-n~fvi~dE-----R~~ 150 (316)
T COG3204 87 NVSSLTYNPDTRTLFAVTNKPAAIVELTKE-GDL----IR--TIP-LTGF--SDPETIEYIGG-NQFVIVDE-----RDR 150 (316)
T ss_pred cccceeeCCCcceEEEecCCCceEEEEecC-Cce----EE--Eec-cccc--CChhHeEEecC-CEEEEEeh-----hcc
Confidence 4568999999998887744 4579999876 441 22 121 1222 24678888763 55444443 334
Q ss_pred eEEEEECCCC-cEEE----EEecCCCCCCCCCccceEECCC-CcEEEEeCCCC-eEEEEcCCCceEEEecCCCCCCcccc
Q 020019 125 AVAAYDLSTW-NRLF----LTQLSGPSDGKSCADDVTVDAE-GNAYVTDVTGS-KIWKVGVKGEFLSIISSPLFTPKEWY 197 (332)
Q Consensus 125 ~l~~~d~~~g-~~~~----~~~l~~~~~~~~~~ndiavd~d-G~lyvtd~~~~-~I~~v~~~g~~~~~~~~~~~~~p~~~ 197 (332)
.++.+-.+.+ .+.. .+++..-...+...-|+|.|+. +++||+-..+. .||.++..-...... ....|...
T Consensus 151 ~l~~~~vd~~t~~~~~~~~~i~L~~~~k~N~GfEGlA~d~~~~~l~~aKEr~P~~I~~~~~~~~~l~~~---~~~~~~~~ 227 (316)
T COG3204 151 ALYLFTVDADTTVISAKVQKIPLGTTNKKNKGFEGLAWDPVDHRLFVAKERNPIGIFEVTQSPSSLSVH---ASLDPTAD 227 (316)
T ss_pred eEEEEEEcCCccEEeccceEEeccccCCCCcCceeeecCCCCceEEEEEccCCcEEEEEecCCcccccc---cccCcccc
Confidence 4555433332 2211 2333211122456789999997 57999877665 588877332111111 00011100
Q ss_pred cC--ccccCeEEEccCc-eEEEEeCCCCeEEEEeCCCCCCccceeEEEEec-C-----CCCCCCCeEEEeCCCeEEEEeC
Q 020019 198 KN--LVGLNGIVYHPDG-FLIVIHTFSGNLFKIDIVDGVGEGEEIKLIRVA-G-----GPLSFGDGLELLSPTKLVVAGN 268 (332)
Q Consensus 198 ~~--~~~~nGi~~~~dG-~Lyva~~~~~~i~~id~~~~~~~~~~~~~v~~~-g-----~~~~~pdGi~~~~dG~l~va~~ 268 (332)
.. ..-..|+.+++.- +|+|-...++.+..++.+.. .+..+.+- | ...+.+.|+++|.+|+||++..
T Consensus 228 ~~~f~~DvSgl~~~~~~~~LLVLS~ESr~l~Evd~~G~-----~~~~lsL~~g~~gL~~dipqaEGiamDd~g~lYIvSE 302 (316)
T COG3204 228 RDLFVLDVSGLEFNAITNSLLVLSDESRRLLEVDLSGE-----VIELLSLTKGNHGLSSDIPQAEGIAMDDDGNLYIVSE 302 (316)
T ss_pred cceEeeccccceecCCCCcEEEEecCCceEEEEecCCC-----eeeeEEeccCCCCCcccCCCcceeEECCCCCEEEEec
Confidence 01 1235689999765 99999889999999999855 44444432 1 2356799999999999999986
Q ss_pred CceEEEEcCC
Q 020019 269 PSARLVESSD 278 (332)
Q Consensus 269 ~~~~~v~~~d 278 (332)
.+...++.++
T Consensus 303 Pnlfy~F~~~ 312 (316)
T COG3204 303 PNLFYRFTPQ 312 (316)
T ss_pred CCcceecccC
Confidence 6545555543
|
|
| >COG2133 Glucose/sorbosone dehydrogenases [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.44 E-value=0.00046 Score=65.11 Aligned_cols=257 Identities=16% Similarity=0.196 Sum_probs=133.9
Q ss_pred CCc-cccceEEcCCCCEEEEEecCCeEEEEECCCCCCCcccee-eeEEecc----------cCcCC--CccceEEEeCCC
Q 020019 43 SSF-FRECAKWDDSGRRFIVSFLDGGIGQVAVPDDYPPGTVLE-EVTLVKD----------LELTG--NGSLGLVLDHPR 108 (332)
Q Consensus 43 ~~~-~pegia~d~~g~~~~~~~~~g~I~~vd~~~~~~~~~~~~-~~~~~~~----------~~~~~--~~~~gi~vd~~~ 108 (332)
+++ +|-+++..++|.+++.....|.+..+....... ..+.. ...+... |.+.. ..+.+++...
T Consensus 64 ~gLe~p~~~~~lP~G~~~v~er~~G~l~~i~~g~~~~-~~~~~~~~~~~~~~~Gll~~al~~~fa~~~~~~~~~a~~~-- 140 (399)
T COG2133 64 QGLEHPWGLARLPDGVLLVTERPTGRLRLISDGGSAS-PPVSTVPIVLLRGQGGLLDIALSPDFAQGRLVYFGISEPG-- 140 (399)
T ss_pred ccccCchhheecCCceEEEEccCCccEEEecCCCccc-ccccccceEEeccCCCccceEecccccccceeeeEEEeec--
Confidence 444 899999999994444445457777776332110 00000 0011110 11110 1345555543
Q ss_pred CeEEEEEeCcCCCccceEEEEECCCCc----EEEEEecCCCCCCCCCccceEECCCCcEEEEeC-------------CCC
Q 020019 109 NRLLVVAADVFGNKYSAVAAYDLSTWN----RLFLTQLSGPSDGKSCADDVTVDAEGNAYVTDV-------------TGS 171 (332)
Q Consensus 109 g~l~v~~~~~~~~~~~~l~~~d~~~g~----~~~~~~l~~~~~~~~~~ndiavd~dG~lyvtd~-------------~~~ 171 (332)
+.+|++.. ..+.+|+....+ ...+..+ |....++...|+++|||.|||+-- ..|
T Consensus 141 ~~~~~~n~-------~~~~~~~~g~~~l~~~~~i~~~l--P~~~~H~g~~l~f~pDG~Lyvs~G~~~~~~~aq~~~~~~G 211 (399)
T COG2133 141 GGLYVANR-------VAIGRLPGGDTKLSEPKVIFRGI--PKGGHHFGGRLVFGPDGKLYVTTGSNGDPALAQDNVSLAG 211 (399)
T ss_pred CCceEEEE-------EEEEEcCCCccccccccEEeecC--CCCCCcCcccEEECCCCcEEEEeCCCCCcccccCcccccc
Confidence 45566543 234556521111 2223345 332357889999999999999742 235
Q ss_pred eEEEEcCCCceEEEecCCCCC-CcccccCccccCeEEEccC-ceEEEEeCCCCeE------EEE--------eCCC----
Q 020019 172 KIWKVGVKGEFLSIISSPLFT-PKEWYKNLVGLNGIVYHPD-GFLIVIHTFSGNL------FKI--------DIVD---- 231 (332)
Q Consensus 172 ~I~~v~~~g~~~~~~~~~~~~-~p~~~~~~~~~nGi~~~~d-G~Lyva~~~~~~i------~~i--------d~~~---- 231 (332)
.|++++.++.... +..+. ...+..+.-++.|++|+|. |.||+++.+...+ -++ ....
T Consensus 212 k~~r~~~a~~~~~---d~p~~~~~i~s~G~RN~qGl~w~P~tg~Lw~~e~g~d~~~~~Deln~i~~G~nYGWP~~~~G~~ 288 (399)
T COG2133 212 KVLRIDRAGIIPA---DNPFPNSEIWSYGHRNPQGLAWHPVTGALWTTEHGPDALRGPDELNSIRPGKNYGWPYAYFGQN 288 (399)
T ss_pred ceeeeccCccccc---CCCCCCcceEEeccCCccceeecCCCCcEEEEecCCCcccCcccccccccCCccCCceeccCcc
Confidence 6667666654321 11222 1223446778999999999 6999999876222 111 1111
Q ss_pred --CCC--ccceeEEEEecC---CCCCCCCeEEEeCC-------CeEEEEeCCceEEE-EcCCCceEEEEEeeecCCCccc
Q 020019 232 --GVG--EGEEIKLIRVAG---GPLSFGDGLELLSP-------TKLVVAGNPSARLV-ESSDGWETAAVVAKFSGPVHRL 296 (332)
Q Consensus 232 --~~~--~~~~~~~v~~~g---~~~~~pdGi~~~~d-------G~l~va~~~~~~~v-~~~dg~~~~~~~~~~~~~~~~~ 296 (332)
+.. ++........+. ++...|.||++-.. |.++|+...+-.++ ..++|-..-.+...+..+....
T Consensus 289 ~~g~~~~~~~~~~~~~~p~~~~~~h~ApsGmaFy~G~~fP~~r~~lfV~~hgsw~~~~~~~~g~~~~~~~~fl~~d~~gR 368 (399)
T COG2133 289 YDGRAIPDGTVVAGAIQPVYTWAPHIAPSGMAFYTGDLFPAYRGDLFVGAHGSWPVLRLRPDGNYKVVLTGFLSGDLGGR 368 (399)
T ss_pred cCccccCCCcccccccCCceeeccccccceeEEecCCcCccccCcEEEEeecceeEEEeccCCCcceEEEEEEecCCCCc
Confidence 000 000000000000 12245789999743 78999986653232 3344522223344444222356
Q ss_pred ceEEEE-ECCeEEEEEecC
Q 020019 297 ATAATV-KDGRVYLNHMLG 314 (332)
Q Consensus 297 pt~va~-~~g~lyv~~~~g 314 (332)
|-.|++ .+|-|||+...+
T Consensus 369 ~~dV~v~~DGallv~~D~~ 387 (399)
T COG2133 369 PRDVAVAPDGALLVLTDQG 387 (399)
T ss_pred ccceEECCCCeEEEeecCC
Confidence 888999 899999977665
|
|
| >PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases | Back alignment and domain information |
|---|
Probab=98.40 E-value=5.9e-06 Score=77.07 Aligned_cols=112 Identities=26% Similarity=0.446 Sum_probs=69.9
Q ss_pred CccceEECCCCcEEEEeCCCCeEEEEcCCCce-EEEecCCCCCCcccccCccccCeEEEccC----ceEEEEeCCC----
Q 020019 151 CADDVTVDAEGNAYVTDVTGSKIWKVGVKGEF-LSIISSPLFTPKEWYKNLVGLNGIVYHPD----GFLIVIHTFS---- 221 (332)
Q Consensus 151 ~~ndiavd~dG~lyvtd~~~~~I~~v~~~g~~-~~~~~~~~~~~p~~~~~~~~~nGi~~~~d----G~Lyva~~~~---- 221 (332)
.|..|++.|||++||++. .|.|++++.+|.. ..+...+.. ......++.||+++|+ ++||++.+..
T Consensus 3 ~P~~~a~~pdG~l~v~e~-~G~i~~~~~~g~~~~~v~~~~~v----~~~~~~gllgia~~p~f~~n~~lYv~~t~~~~~~ 77 (331)
T PF07995_consen 3 NPRSMAFLPDGRLLVAER-SGRIWVVDKDGSLKTPVADLPEV----FADGERGLLGIAFHPDFASNGYLYVYYTNADEDG 77 (331)
T ss_dssp SEEEEEEETTSCEEEEET-TTEEEEEETTTEECEEEEE-TTT----BTSTTBSEEEEEE-TTCCCC-EEEEEEEEE-TSS
T ss_pred CceEEEEeCCCcEEEEeC-CceEEEEeCCCcCcceecccccc----cccccCCcccceeccccCCCCEEEEEEEcccCCC
Confidence 577899999999999998 8999999988775 333222111 1124567899999995 7899887743
Q ss_pred ----CeEEEEeCCCCCCc-cceeEEEE-ecC--CCCCCCCeEEEeCCCeEEEEe
Q 020019 222 ----GNLFKIDIVDGVGE-GEEIKLIR-VAG--GPLSFGDGLELLSPTKLVVAG 267 (332)
Q Consensus 222 ----~~i~~id~~~~~~~-~~~~~~v~-~~g--~~~~~pdGi~~~~dG~l~va~ 267 (332)
.+|.|+..+.+... +.....+. .+. ...-...+|++++||.|||+.
T Consensus 78 ~~~~~~v~r~~~~~~~~~~~~~~~l~~~~p~~~~~~H~g~~l~fgpDG~LYvs~ 131 (331)
T PF07995_consen 78 GDNDNRVVRFTLSDGDGDLSSEEVLVTGLPDTSSGNHNGGGLAFGPDGKLYVSV 131 (331)
T ss_dssp SSEEEEEEEEEEETTSCEEEEEEEEEEEEES-CSSSS-EEEEEE-TTSEEEEEE
T ss_pred CCcceeeEEEeccCCccccccceEEEEEeCCCCCCCCCCccccCCCCCcEEEEe
Confidence 57888887644110 11111111 121 111123579999999999994
|
The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B .... |
| >PRK04792 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=98.29 E-value=0.0006 Score=66.29 Aligned_cols=153 Identities=18% Similarity=0.233 Sum_probs=92.9
Q ss_pred ceEEcCCCCEE-EEEec--CCeEEEEECCCCCCCccceeeeEEecccCcCCCccceEEEeCCCCeEEEEEeCcCCCccce
Q 020019 49 CAKWDDSGRRF-IVSFL--DGGIGQVAVPDDYPPGTVLEEVTLVKDLELTGNGSLGLVLDHPRNRLLVVAADVFGNKYSA 125 (332)
Q Consensus 49 gia~d~~g~~~-~~~~~--~g~I~~vd~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~vd~~~g~l~v~~~~~~~~~~~~ 125 (332)
.+.|+|||+.+ |++.. ..+|+.++..+++. . .+...++ .....+++|+...|+++.... +...
T Consensus 222 ~p~wSPDG~~La~~s~~~g~~~L~~~dl~tg~~-----~--~lt~~~g----~~~~~~wSPDG~~La~~~~~~---g~~~ 287 (448)
T PRK04792 222 SPAWSPDGRKLAYVSFENRKAEIFVQDIYTQVR-----E--KVTSFPG----INGAPRFSPDGKKLALVLSKD---GQPE 287 (448)
T ss_pred CceECCCCCEEEEEEecCCCcEEEEEECCCCCe-----E--EecCCCC----CcCCeeECCCCCEEEEEEeCC---CCeE
Confidence 68999999855 44433 34699999877652 1 2221121 223568888744465543221 2356
Q ss_pred EEEEECCCCcEEEEEecCCCCCCCCCccceEECCCCc-EEEEeC--CCCeEEEEcCC-CceEEEecCCCCCCcccccCcc
Q 020019 126 VAAYDLSTWNRLFLTQLSGPSDGKSCADDVTVDAEGN-AYVTDV--TGSKIWKVGVK-GEFLSIISSPLFTPKEWYKNLV 201 (332)
Q Consensus 126 l~~~d~~~g~~~~~~~l~~~~~~~~~~ndiavd~dG~-lyvtd~--~~~~I~~v~~~-g~~~~~~~~~~~~~p~~~~~~~ 201 (332)
|+.+|.++++....... .......++.|||+ |+++.. +...||+++.+ |+..++.... .
T Consensus 288 Iy~~dl~tg~~~~lt~~------~~~~~~p~wSpDG~~I~f~s~~~g~~~Iy~~dl~~g~~~~Lt~~g-----------~ 350 (448)
T PRK04792 288 IYVVDIATKALTRITRH------RAIDTEPSWHPDGKSLIFTSERGGKPQIYRVNLASGKVSRLTFEG-----------E 350 (448)
T ss_pred EEEEECCCCCeEECccC------CCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCEEEEecCC-----------C
Confidence 99999988876432211 12345578899986 655543 34689999976 4443331111 1
Q ss_pred ccCeEEEccCc-eEEEEeCCCC--eEEEEeCCCC
Q 020019 202 GLNGIVYHPDG-FLIVIHTFSG--NLFKIDIVDG 232 (332)
Q Consensus 202 ~~nGi~~~~dG-~Lyva~~~~~--~i~~id~~~~ 232 (332)
...+.+++||| .||++....+ +|++++++++
T Consensus 351 ~~~~~~~SpDG~~l~~~~~~~g~~~I~~~dl~~g 384 (448)
T PRK04792 351 QNLGGSITPDGRSMIMVNRTNGKFNIARQDLETG 384 (448)
T ss_pred CCcCeeECCCCCEEEEEEecCCceEEEEEECCCC
Confidence 12356899999 8888765443 6889998876
|
|
| >PRK05137 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=98.29 E-value=0.00039 Score=67.31 Aligned_cols=180 Identities=8% Similarity=0.048 Sum_probs=104.8
Q ss_pred cceEEcCCCCE-EEEEe--cCCeEEEEECCCCCCCccceeeeEEecccCcCCCccceEEEeCCCCeEEEEEeCcCCCccc
Q 020019 48 ECAKWDDSGRR-FIVSF--LDGGIGQVAVPDDYPPGTVLEEVTLVKDLELTGNGSLGLVLDHPRNRLLVVAADVFGNKYS 124 (332)
Q Consensus 48 egia~d~~g~~-~~~~~--~~g~I~~vd~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~vd~~~g~l~v~~~~~~~~~~~ 124 (332)
..+.|+|||+. +|++. ....|+.++..+++. + .+...++ ......+.|+..+|+++.... +..
T Consensus 205 ~~p~wSpDG~~lay~s~~~g~~~i~~~dl~~g~~-----~--~l~~~~g----~~~~~~~SPDG~~la~~~~~~---g~~ 270 (435)
T PRK05137 205 LTPRFSPNRQEITYMSYANGRPRVYLLDLETGQR-----E--LVGNFPG----MTFAPRFSPDGRKVVMSLSQG---GNT 270 (435)
T ss_pred EeeEECCCCCEEEEEEecCCCCEEEEEECCCCcE-----E--EeecCCC----cccCcEECCCCCEEEEEEecC---CCc
Confidence 45889999984 45543 246899999887652 1 2221122 234667888733454443211 235
Q ss_pred eEEEEECCCCcEEEEEecCCCCCCCCCccceEECCCCc-EEEEeC--CCCeEEEEcCCCceEEEecCCCCCCcccccCcc
Q 020019 125 AVAAYDLSTWNRLFLTQLSGPSDGKSCADDVTVDAEGN-AYVTDV--TGSKIWKVGVKGEFLSIISSPLFTPKEWYKNLV 201 (332)
Q Consensus 125 ~l~~~d~~~g~~~~~~~l~~~~~~~~~~ndiavd~dG~-lyvtd~--~~~~I~~v~~~g~~~~~~~~~~~~~p~~~~~~~ 201 (332)
.|+.+|.++++....... ........+.|||+ |+++.. +...||+++.++...+.+.... .
T Consensus 271 ~Iy~~d~~~~~~~~Lt~~------~~~~~~~~~spDG~~i~f~s~~~g~~~Iy~~d~~g~~~~~lt~~~----------~ 334 (435)
T PRK05137 271 DIYTMDLRSGTTTRLTDS------PAIDTSPSYSPDGSQIVFESDRSGSPQLYVMNADGSNPRRISFGG----------G 334 (435)
T ss_pred eEEEEECCCCceEEccCC------CCccCceeEcCCCCEEEEEECCCCCCeEEEEECCCCCeEEeecCC----------C
Confidence 689999988776432211 12344578999986 655432 3458999998765333221110 1
Q ss_pred ccCeEEEccCc-eEEEEeCCC--CeEEEEeCCCCCCccceeEEEEecCCCCCCCCeEEEeCCCe-EEEE
Q 020019 202 GLNGIVYHPDG-FLIVIHTFS--GNLFKIDIVDGVGEGEEIKLIRVAGGPLSFGDGLELLSPTK-LVVA 266 (332)
Q Consensus 202 ~~nGi~~~~dG-~Lyva~~~~--~~i~~id~~~~~~~~~~~~~v~~~g~~~~~pdGi~~~~dG~-l~va 266 (332)
......|+||| .|++..... .+|+.++++++ ..+.+... .......+.+||+ |+++
T Consensus 335 ~~~~~~~SpdG~~ia~~~~~~~~~~i~~~d~~~~-----~~~~lt~~----~~~~~p~~spDG~~i~~~ 394 (435)
T PRK05137 335 RYSTPVWSPRGDLIAFTKQGGGQFSIGVMKPDGS-----GERILTSG----FLVEGPTWAPNGRVIMFF 394 (435)
T ss_pred cccCeEECCCCCEEEEEEcCCCceEEEEEECCCC-----ceEeccCC----CCCCCCeECCCCCEEEEE
Confidence 23457899999 887766543 47888888754 23333211 1245677888877 3443
|
|
| >KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.26 E-value=0.00036 Score=68.96 Aligned_cols=183 Identities=19% Similarity=0.265 Sum_probs=114.8
Q ss_pred cccceEEcCCCCEEEEEecCCeEEEEECCCCCCCccceeeeEEecccCcCCCccceEEEeCCCCeEEEEEeCcCCCccce
Q 020019 46 FRECAKWDDSGRRFIVSFLDGGIGQVAVPDDYPPGTVLEEVTLVKDLELTGNGSLGLVLDHPRNRLLVVAADVFGNKYSA 125 (332)
Q Consensus 46 ~pegia~d~~g~~~~~~~~~g~I~~vd~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~vd~~~g~l~v~~~~~~~~~~~~ 125 (332)
....++++|||++..+...+|+|-.|+...+-+ .+++-+ +. .++.++.+... |+..++..= .+.
T Consensus 352 ~i~~l~YSpDgq~iaTG~eDgKVKvWn~~SgfC------~vTFte-Ht---s~Vt~v~f~~~-g~~llssSL-----DGt 415 (893)
T KOG0291|consen 352 RITSLAYSPDGQLIATGAEDGKVKVWNTQSGFC------FVTFTE-HT---SGVTAVQFTAR-GNVLLSSSL-----DGT 415 (893)
T ss_pred ceeeEEECCCCcEEEeccCCCcEEEEeccCceE------EEEecc-CC---CceEEEEEEec-CCEEEEeec-----CCe
Confidence 445799999999888888899999999877654 124432 22 26788999885 776666531 357
Q ss_pred EEEEECCCCcEEEEEecCCCCCCCCCccceEECCCCcEEEEeCC-CCeEEEEcCC-CceEEEecCCCCCCcccccCcccc
Q 020019 126 VAAYDLSTWNRLFLTQLSGPSDGKSCADDVTVDAEGNAYVTDVT-GSKIWKVGVK-GEFLSIISSPLFTPKEWYKNLVGL 203 (332)
Q Consensus 126 l~~~d~~~g~~~~~~~l~~~~~~~~~~ndiavd~dG~lyvtd~~-~~~I~~v~~~-g~~~~~~~~~~~~~p~~~~~~~~~ 203 (332)
+..||++...--+.+.. |. ......+++||.|.+.++-.. .=.|+..+.. |+.+-.+... +.| .
T Consensus 416 VRAwDlkRYrNfRTft~--P~--p~QfscvavD~sGelV~AG~~d~F~IfvWS~qTGqllDiLsGH--EgP--------V 481 (893)
T KOG0291|consen 416 VRAWDLKRYRNFRTFTS--PE--PIQFSCVAVDPSGELVCAGAQDSFEIFVWSVQTGQLLDILSGH--EGP--------V 481 (893)
T ss_pred EEeeeecccceeeeecC--CC--ceeeeEEEEcCCCCEEEeeccceEEEEEEEeecCeeeehhcCC--CCc--------c
Confidence 88999976543333333 32 244667999999988776544 3467777754 7766544211 122 3
Q ss_pred CeEEEccCceEEEEeCCCCeEEEEeC--CCCCCccceeEEEEecCCCCCCCCeEEEeCCCe-EEEEe
Q 020019 204 NGIVYHPDGFLIVIHTFSGNLFKIDI--VDGVGEGEEIKLIRVAGGPLSFGDGLELLSPTK-LVVAG 267 (332)
Q Consensus 204 nGi~~~~dG~Lyva~~~~~~i~~id~--~~~~~~~~~~~~v~~~g~~~~~pdGi~~~~dG~-l~va~ 267 (332)
.|++++++|.+.++-+=..+|..++. ..+ .++.++.. .-.-++++.|||+ |-|+.
T Consensus 482 s~l~f~~~~~~LaS~SWDkTVRiW~if~s~~-----~vEtl~i~----sdvl~vsfrPdG~elaVaT 539 (893)
T KOG0291|consen 482 SGLSFSPDGSLLASGSWDKTVRIWDIFSSSG-----TVETLEIR----SDVLAVSFRPDGKELAVAT 539 (893)
T ss_pred eeeEEccccCeEEeccccceEEEEEeeccCc-----eeeeEeec----cceeEEEEcCCCCeEEEEE
Confidence 68999999944444444455544444 333 45555543 1223566667755 66664
|
|
| >PF03088 Str_synth: Strictosidine synthase; InterPro: IPR018119 This entry represents a conserved region found in strictosidine synthase (4 | Back alignment and domain information |
|---|
Probab=98.26 E-value=8.6e-06 Score=60.37 Aligned_cols=75 Identities=19% Similarity=0.245 Sum_probs=52.9
Q ss_pred ceEEEeCCCCeEEEEEeCcC------------CCccceEEEEECCCCcEEEEEecCCCCCCCCCccceEECCCCc-EEEE
Q 020019 100 LGLVLDHPRNRLLVVAADVF------------GNKYSAVAAYDLSTWNRLFLTQLSGPSDGKSCADDVTVDAEGN-AYVT 166 (332)
Q Consensus 100 ~gi~vd~~~g~l~v~~~~~~------------~~~~~~l~~~d~~~g~~~~~~~l~~~~~~~~~~ndiavd~dG~-lyvt 166 (332)
+++.+++++|.+|+++.... +...++|..||+++++.....+ +..+|||+++.+|+. ++|+
T Consensus 1 ndldv~~~~g~vYfTdsS~~~~~~~~~~~~le~~~~GRll~ydp~t~~~~vl~~------~L~fpNGVals~d~~~vlv~ 74 (89)
T PF03088_consen 1 NDLDVDQDTGTVYFTDSSSRYDRRDWVYDLLEGRPTGRLLRYDPSTKETTVLLD------GLYFPNGVALSPDESFVLVA 74 (89)
T ss_dssp -EEEE-TTT--EEEEES-SS--TTGHHHHHHHT---EEEEEEETTTTEEEEEEE------EESSEEEEEE-TTSSEEEEE
T ss_pred CceeEecCCCEEEEEeCccccCccceeeeeecCCCCcCEEEEECCCCeEEEehh------CCCccCeEEEcCCCCEEEEE
Confidence 46888886699999986421 1457899999999987654332 247999999999986 9999
Q ss_pred eCCCCeEEEEcCCC
Q 020019 167 DVTGSKIWKVGVKG 180 (332)
Q Consensus 167 d~~~~~I~~v~~~g 180 (332)
++...+|.|+-.+|
T Consensus 75 Et~~~Ri~rywl~G 88 (89)
T PF03088_consen 75 ETGRYRILRYWLKG 88 (89)
T ss_dssp EGGGTEEEEEESSS
T ss_pred eccCceEEEEEEeC
Confidence 99999999986655
|
3.3.2 from EC), a key enzyme in alkaloid biosynthesis. It catalyses the Pictet-Spengler stereospecific condensation of tryptamine with secologanin to form strictosidine []. The structure of the native enzyme from the Indian medicinal plant Rauvolfia serpentina (Serpentwood) (Devilpepper) represents the first example of a six-bladed four-stranded beta-propeller fold from the plant kingdom [].; GO: 0016844 strictosidine synthase activity, 0009058 biosynthetic process; PDB: 2FPB_A 2V91_B 2FP8_A 3V1S_B 2FPC_A 2VAQ_A 2FP9_B. |
| >KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.26 E-value=0.0021 Score=57.65 Aligned_cols=204 Identities=13% Similarity=0.156 Sum_probs=128.0
Q ss_pred CCccccceEEcCCCCEEEEEecCCeEEEEECCCCCCCccceeeeEEecccCcCCCccceEEEeCCCCeEEEEEeCcCCCc
Q 020019 43 SSFFRECAKWDDSGRRFIVSFLDGGIGQVAVPDDYPPGTVLEEVTLVKDLELTGNGSLGLVLDHPRNRLLVVAADVFGNK 122 (332)
Q Consensus 43 ~~~~pegia~d~~g~~~~~~~~~g~I~~vd~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~vd~~~g~l~v~~~~~~~~~ 122 (332)
..-.++.+.++++|..++++..+..|..+|..+++. ...+..... ++.-+.+......+.-+..- .
T Consensus 13 ~~~~i~sl~fs~~G~~litss~dDsl~LYd~~~g~~-------~~ti~skky---G~~~~~Fth~~~~~i~sStk----~ 78 (311)
T KOG1446|consen 13 TNGKINSLDFSDDGLLLITSSEDDSLRLYDSLSGKQ-------VKTINSKKY---GVDLACFTHHSNTVIHSSTK----E 78 (311)
T ss_pred CCCceeEEEecCCCCEEEEecCCCeEEEEEcCCCce-------eeEeecccc---cccEEEEecCCceEEEccCC----C
Confidence 344788999999999888887778999999877762 122322222 33333433333554444331 1
Q ss_pred cceEEEEECCCCcEEEEEecCCCCCCCCCccceEECCCCcEEEEeCCCCeEEEEcCCCc-eEEEecCCCCCCcccccCcc
Q 020019 123 YSAVAAYDLSTWNRLFLTQLSGPSDGKSCADDVTVDAEGNAYVTDVTGSKIWKVGVKGE-FLSIISSPLFTPKEWYKNLV 201 (332)
Q Consensus 123 ~~~l~~~d~~~g~~~~~~~l~~~~~~~~~~ndiavd~dG~lyvtd~~~~~I~~v~~~g~-~~~~~~~~~~~~p~~~~~~~ 201 (332)
...|..+++.+++.++.+ ++. ....+.+.+.|-++.+++-+....|.-.|..-+ -...+.. .
T Consensus 79 d~tIryLsl~dNkylRYF--~GH---~~~V~sL~~sP~~d~FlS~S~D~tvrLWDlR~~~cqg~l~~------------~ 141 (311)
T KOG1446|consen 79 DDTIRYLSLHDNKYLRYF--PGH---KKRVNSLSVSPKDDTFLSSSLDKTVRLWDLRVKKCQGLLNL------------S 141 (311)
T ss_pred CCceEEEEeecCceEEEc--CCC---CceEEEEEecCCCCeEEecccCCeEEeeEecCCCCceEEec------------C
Confidence 234666777777776543 221 357888999999899999998888877776522 1211211 2
Q ss_pred ccCeEEEccCceEEEEeCCCCeEEEEeCCCCCCccceeEEEEecCCCCCCCCeEEEeCCCe-EEEEeCCc-eEEEEcCCC
Q 020019 202 GLNGIVYHPDGFLIVIHTFSGNLFKIDIVDGVGEGEEIKLIRVAGGPLSFGDGLELLSPTK-LVVAGNPS-ARLVESSDG 279 (332)
Q Consensus 202 ~~nGi~~~~dG~Lyva~~~~~~i~~id~~~~~~~~~~~~~v~~~g~~~~~pdGi~~~~dG~-l~va~~~~-~~~v~~~dg 279 (332)
++.-+|+||+|.++++-.+++.|--+|+..-.. .+.+.+.........-.+|.+.+||+ |.++.+.+ ..++...+|
T Consensus 142 ~~pi~AfDp~GLifA~~~~~~~IkLyD~Rs~dk--gPF~tf~i~~~~~~ew~~l~FS~dGK~iLlsT~~s~~~~lDAf~G 219 (311)
T KOG1446|consen 142 GRPIAAFDPEGLIFALANGSELIKLYDLRSFDK--GPFTTFSITDNDEAEWTDLEFSPDGKSILLSTNASFIYLLDAFDG 219 (311)
T ss_pred CCcceeECCCCcEEEEecCCCeEEEEEecccCC--CCceeEccCCCCccceeeeEEcCCCCEEEEEeCCCcEEEEEccCC
Confidence 234679999997777777777787778763100 14444544322345667999999999 44444443 455677888
|
|
| >PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function | Back alignment and domain information |
|---|
Probab=98.25 E-value=0.00064 Score=61.72 Aligned_cols=193 Identities=16% Similarity=0.175 Sum_probs=120.5
Q ss_pred eEEcCCCCEEEEE---e--cCCeEEEEECCCCCCCccceeeeEEecccCcCCCccceEEEeCCCC-eEEEEEeCcCC---
Q 020019 50 AKWDDSGRRFIVS---F--LDGGIGQVAVPDDYPPGTVLEEVTLVKDLELTGNGSLGLVLDHPRN-RLLVVAADVFG--- 120 (332)
Q Consensus 50 ia~d~~g~~~~~~---~--~~g~I~~vd~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~vd~~~g-~l~v~~~~~~~--- 120 (332)
-+|++||+++|+. . ..|.|.++|... .+ + ..-+.++ .|.+|.-|.+.++ | +|.|++.+...
T Consensus 56 g~fs~dG~~LytTEnd~~~g~G~IgVyd~~~-~~-----~--ri~E~~s-~GIGPHel~l~pD-G~tLvVANGGI~Thpd 125 (305)
T PF07433_consen 56 GVFSPDGRLLYTTENDYETGRGVIGVYDAAR-GY-----R--RIGEFPS-HGIGPHELLLMPD-GETLVVANGGIETHPD 125 (305)
T ss_pred EEEcCCCCEEEEeccccCCCcEEEEEEECcC-Cc-----E--EEeEecC-CCcChhhEEEcCC-CCEEEEEcCCCccCcc
Confidence 5688999998886 2 246799999873 32 1 1221222 3568999999997 6 88888765321
Q ss_pred ---Cc------cceEEEEECCCCcEEEEEecCCCCCCCCCccceEECCCCcEEEEeCC-------CCeEEEEcCCCceEE
Q 020019 121 ---NK------YSAVAAYDLSTWNRLFLTQLSGPSDGKSCADDVTVDAEGNAYVTDVT-------GSKIWKVGVKGEFLS 184 (332)
Q Consensus 121 ---~~------~~~l~~~d~~~g~~~~~~~l~~~~~~~~~~ndiavd~dG~lyvtd~~-------~~~I~~v~~~g~~~~ 184 (332)
.+ ...|..+|..+|++.....++. ...+.....++++++|.+++..-. ..-|..++.++.. +
T Consensus 126 ~GR~kLNl~tM~psL~~ld~~sG~ll~q~~Lp~-~~~~lSiRHLa~~~~G~V~~a~Q~qg~~~~~~PLva~~~~g~~~-~ 203 (305)
T PF07433_consen 126 SGRAKLNLDTMQPSLVYLDARSGALLEQVELPP-DLHQLSIRHLAVDGDGTVAFAMQYQGDPGDAPPLVALHRRGGAL-R 203 (305)
T ss_pred cCceecChhhcCCceEEEecCCCceeeeeecCc-cccccceeeEEecCCCcEEEEEecCCCCCccCCeEEEEcCCCcc-e
Confidence 01 1357778999999887777742 223467889999999999987432 2345555555432 2
Q ss_pred EecCCCCCCcccccCccccCeEEEccCc-eEEEEeCCCCeEEEEeCCCCCCccceeEEEEecCCCCCCCCeEEEeCCCeE
Q 020019 185 IISSPLFTPKEWYKNLVGLNGIVYHPDG-FLIVIHTFSGNLFKIDIVDGVGEGEEIKLIRVAGGPLSFGDGLELLSPTKL 263 (332)
Q Consensus 185 ~~~~~~~~~p~~~~~~~~~nGi~~~~dG-~Lyva~~~~~~i~~id~~~~~~~~~~~~~v~~~g~~~~~pdGi~~~~dG~l 263 (332)
.+..+ .+.+..-....-.|+++++| .+.++....+++..+|..++. .+..+. +.-.-|++..+++ +
T Consensus 204 ~~~~p---~~~~~~l~~Y~gSIa~~~~g~~ia~tsPrGg~~~~~d~~tg~----~~~~~~-----l~D~cGva~~~~~-f 270 (305)
T PF07433_consen 204 LLPAP---EEQWRRLNGYIGSIAADRDGRLIAVTSPRGGRVAVWDAATGR----LLGSVP-----LPDACGVAPTDDG-F 270 (305)
T ss_pred eccCC---hHHHHhhCCceEEEEEeCCCCEEEEECCCCCEEEEEECCCCC----Eeeccc-----cCceeeeeecCCc-e
Confidence 21111 00011122345679999999 788888889999999988872 233222 2233467666666 3
Q ss_pred EEEe
Q 020019 264 VVAG 267 (332)
Q Consensus 264 ~va~ 267 (332)
.++.
T Consensus 271 ~~ss 274 (305)
T PF07433_consen 271 LVSS 274 (305)
T ss_pred EEeC
Confidence 4443
|
|
| >TIGR03032 conserved hypothetical protein TIGR03032 | Back alignment and domain information |
|---|
Probab=98.17 E-value=0.00048 Score=62.31 Aligned_cols=177 Identities=14% Similarity=0.159 Sum_probs=101.1
Q ss_pred EEEEEecCCeEEEEECC-CCCCCccceeeeEEecccCcCCCccceEEEeCCCCeEEEEEeCcCCCccceEEEE---EC--
Q 020019 58 RFIVSFLDGGIGQVAVP-DDYPPGTVLEEVTLVKDLELTGNGSLGLVLDHPRNRLLVVAADVFGNKYSAVAAY---DL-- 131 (332)
Q Consensus 58 ~~~~~~~~g~I~~vd~~-~~~~~~~~~~~~~~~~~~~~~~~~~~gi~vd~~~g~l~v~~~~~~~~~~~~l~~~---d~-- 131 (332)
+.++....|++..+..+ ++.. .+... .+ ..+.||++++ ++||++.. ..|+.| +-
T Consensus 20 la~sTYQagkL~~ig~~~~g~l--------~~~~r-~F--~r~MGl~~~~--~~l~~~t~-------~qiw~f~~~~n~l 79 (335)
T TIGR03032 20 LAVTTYQAGKLFFIGLQPNGEL--------DVFER-TF--PRPMGLAVSP--QSLTLGTR-------YQLWRFANVDNLL 79 (335)
T ss_pred EEEEeeecceEEEEEeCCCCcE--------EEEee-cc--CccceeeeeC--CeEEEEEc-------ceeEEcccccccc
Confidence 44555667887777544 3332 12111 12 2678999987 68999875 346655 21
Q ss_pred CCCcE-----EEEEecCCCCCCCCCccceEECCCCcEEEEeCCCCeEEEEcCCCceEEEecCCCCC---Ccc--------
Q 020019 132 STWNR-----LFLTQLSGPSDGKSCADDVTVDAEGNAYVTDVTGSKIWKVGVKGEFLSIISSPLFT---PKE-------- 195 (332)
Q Consensus 132 ~~g~~-----~~~~~l~~~~~~~~~~ndiavd~dG~lyvtd~~~~~I~~v~~~g~~~~~~~~~~~~---~p~-------- 195 (332)
..++. ...++-.....+.-..+||++ .++.+|+.++.-.++-.++++-.+...+.. .|. .|+
T Consensus 80 ~~~~~~~~~D~~yvPr~~~~TGdidiHdia~-~~~~l~fVNT~fSCLatl~~~~SF~P~WkP-pFIs~la~eDRCHLNGl 157 (335)
T TIGR03032 80 PAGQTHPGYDRLYVPRASYVTGDIDAHDLAL-GAGRLLFVNTLFSCLATVSPDYSFVPLWKP-PFISKLAPEDRCHLNGM 157 (335)
T ss_pred cccccCCCCCeEEeeeeeeeccCcchhheee-cCCcEEEEECcceeEEEECCCCccccccCC-ccccccCccCceeecce
Confidence 11111 001110000112346788999 566899999988888888777544432211 111 010
Q ss_pred ----------------------------------------cccCccccCeEEEccCceEEEEeCCCCeEEEEeCCCCCCc
Q 020019 196 ----------------------------------------WYKNLVGLNGIVYHPDGFLIVIHTFSGNLFKIDIVDGVGE 235 (332)
Q Consensus 196 ----------------------------------------~~~~~~~~nGi~~~~dG~Lyva~~~~~~i~~id~~~~~~~ 235 (332)
...++.-|.+--|. +|.||+.|+.++++.++|+++|+
T Consensus 158 A~~~g~p~yVTa~~~sD~~~gWR~~~~~gG~vidv~s~evl~~GLsmPhSPRWh-dgrLwvldsgtGev~~vD~~~G~-- 234 (335)
T TIGR03032 158 ALDDGEPRYVTALSQSDVADGWREGRRDGGCVIDIPSGEVVASGLSMPHSPRWY-QGKLWLLNSGRGELGYVDPQAGK-- 234 (335)
T ss_pred eeeCCeEEEEEEeeccCCcccccccccCCeEEEEeCCCCEEEcCccCCcCCcEe-CCeEEEEECCCCEEEEEcCCCCc--
Confidence 01233334444454 67899999999999999998773
Q ss_pred cceeEEEEecCCCCCCCCeEEEeCCCeEEEEe
Q 020019 236 GEEIKLIRVAGGPLSFGDGLELLSPTKLVVAG 267 (332)
Q Consensus 236 ~~~~~~v~~~g~~~~~pdGi~~~~dG~l~va~ 267 (332)
......++ +.|.||.+. |.+.+..
T Consensus 235 --~e~Va~vp----G~~rGL~f~--G~llvVg 258 (335)
T TIGR03032 235 --FQPVAFLP----GFTRGLAFA--GDFAFVG 258 (335)
T ss_pred --EEEEEECC----CCCccccee--CCEEEEE
Confidence 23333444 478899998 6766665
|
This protein family is uncharacterized. A number of motifs are conserved perfectly among all member sequences. The function of this protein is unknown. |
| >KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.15 E-value=0.0035 Score=56.23 Aligned_cols=156 Identities=15% Similarity=0.186 Sum_probs=96.9
Q ss_pred ccceEEEeCCCCeEEEEEeCcCCCccceEEEEECCCCcEEEEEecCCCCCCCCCccceEECCCCcEEEEeCCCCeEEEEc
Q 020019 98 GSLGLVLDHPRNRLLVVAADVFGNKYSAVAAYDLSTWNRLFLTQLSGPSDGKSCADDVTVDAEGNAYVTDVTGSKIWKVG 177 (332)
Q Consensus 98 ~~~gi~vd~~~g~l~v~~~~~~~~~~~~l~~~d~~~g~~~~~~~l~~~~~~~~~~ndiavd~dG~lyvtd~~~~~I~~v~ 177 (332)
.++.|.+.|. +..++... ....+..||++..+-.-...+. .+.-.|+||+|-++..-.....|.-+|
T Consensus 102 ~V~sL~~sP~-~d~FlS~S-----~D~tvrLWDlR~~~cqg~l~~~-------~~pi~AfDp~GLifA~~~~~~~IkLyD 168 (311)
T KOG1446|consen 102 RVNSLSVSPK-DDTFLSSS-----LDKTVRLWDLRVKKCQGLLNLS-------GRPIAAFDPEGLIFALANGSELIKLYD 168 (311)
T ss_pred eEEEEEecCC-CCeEEecc-----cCCeEEeeEecCCCCceEEecC-------CCcceeECCCCcEEEEecCCCeEEEEE
Confidence 5788999997 56677653 1346888999854433333332 233489999996666666666777777
Q ss_pred CC----CceEEEecCCCCCCcccccCccccCeEEEccCc-eEEEEeCCCCeEEEEeCCCCCCccceeEEEEecCCCCCCC
Q 020019 178 VK----GEFLSIISSPLFTPKEWYKNLVGLNGIVYHPDG-FLIVIHTFSGNLFKIDIVDGVGEGEEIKLIRVAGGPLSFG 252 (332)
Q Consensus 178 ~~----g~~~~~~~~~~~~~p~~~~~~~~~nGi~~~~dG-~Lyva~~~~~~i~~id~~~~~~~~~~~~~v~~~g~~~~~p 252 (332)
.. |-...+.-.. +....-+.|.|++|| .|.++ +..+.++.+|.-+|. ....+...-.....|
T Consensus 169 ~Rs~dkgPF~tf~i~~--------~~~~ew~~l~FS~dGK~iLls-T~~s~~~~lDAf~G~----~~~tfs~~~~~~~~~ 235 (311)
T KOG1446|consen 169 LRSFDKGPFTTFSITD--------NDEAEWTDLEFSPDGKSILLS-TNASFIYLLDAFDGT----VKSTFSGYPNAGNLP 235 (311)
T ss_pred ecccCCCCceeEccCC--------CCccceeeeEEcCCCCEEEEE-eCCCcEEEEEccCCc----EeeeEeeccCCCCcc
Confidence 43 2222221100 123456899999999 66666 456778999988773 455555431233456
Q ss_pred CeEEEeCCCeEEEEeCC--ceEEEEcCCC
Q 020019 253 DGLELLSPTKLVVAGNP--SARLVESSDG 279 (332)
Q Consensus 253 dGi~~~~dG~l~va~~~--~~~~v~~~dg 279 (332)
-+.++.||++.++++.. ...+-...+|
T Consensus 236 ~~a~ftPds~Fvl~gs~dg~i~vw~~~tg 264 (311)
T KOG1446|consen 236 LSATFTPDSKFVLSGSDDGTIHVWNLETG 264 (311)
T ss_pred eeEEECCCCcEEEEecCCCcEEEEEcCCC
Confidence 67788899998888643 2333345666
|
|
| >KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.14 E-value=0.0025 Score=55.61 Aligned_cols=230 Identities=13% Similarity=0.110 Sum_probs=135.8
Q ss_pred eeEEEecCCccccceEEcCCCCEEEEEecCCeEEEEECCCCCCCccceeeeEEecccCcCCCccceEEEeCCCCeEEEEE
Q 020019 36 HVYHYHSSSFFRECAKWDDSGRRFIVSFLDGGIGQVAVPDDYPPGTVLEEVTLVKDLELTGNGSLGLVLDHPRNRLLVVA 115 (332)
Q Consensus 36 ~~i~~~~~~~~pegia~d~~g~~~~~~~~~g~I~~vd~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~vd~~~g~l~v~~ 115 (332)
.++.|.+.......+.|..+|++.|++..+|.+-.+|...-.. + +.+. .+ ..++.+.++|+.+.|++++
T Consensus 75 Pv~t~e~h~kNVtaVgF~~dgrWMyTgseDgt~kIWdlR~~~~-----q-R~~~-~~----spVn~vvlhpnQteLis~d 143 (311)
T KOG0315|consen 75 PVATFEGHTKNVTAVGFQCDGRWMYTGSEDGTVKIWDLRSLSC-----Q-RNYQ-HN----SPVNTVVLHPNQTELISGD 143 (311)
T ss_pred ceeEEeccCCceEEEEEeecCeEEEecCCCceEEEEeccCccc-----c-hhcc-CC----CCcceEEecCCcceEEeec
Confidence 4555666544556788999999889888889888887654321 2 1222 22 1468899999888999998
Q ss_pred eCcCCCccceEEEEECCCCcEEEEEecCCCCCCCCCccceEECCCCcEEEEeCCCCeEEEEcCCC-c-eEEEecCCCCCC
Q 020019 116 ADVFGNKYSAVAAYDLSTWNRLFLTQLSGPSDGKSCADDVTVDAEGNAYVTDVTGSKIWKVGVKG-E-FLSIISSPLFTP 193 (332)
Q Consensus 116 ~~~~~~~~~~l~~~d~~~g~~~~~~~l~~~~~~~~~~ndiavd~dG~lyvtd~~~~~I~~v~~~g-~-~~~~~~~~~~~~ 193 (332)
+ .+.|.+||+....-. .++- |. ...+..-+++++||...++-...|..|..+.-+ . ...+.....++.
T Consensus 144 q------sg~irvWDl~~~~c~--~~li-Pe-~~~~i~sl~v~~dgsml~a~nnkG~cyvW~l~~~~~~s~l~P~~k~~a 213 (311)
T KOG0315|consen 144 Q------SGNIRVWDLGENSCT--HELI-PE-DDTSIQSLTVMPDGSMLAAANNKGNCYVWRLLNHQTASELEPVHKFQA 213 (311)
T ss_pred C------CCcEEEEEccCCccc--cccC-CC-CCcceeeEEEcCCCcEEEEecCCccEEEEEccCCCccccceEhhheec
Confidence 6 357999999765322 1221 22 246778899999998777666666655554332 1 111111111211
Q ss_pred cccccCccccCeEEEccCceEEEEeCCCCeEEEEeCCCCCCccceeEEEEecCCCCCCCCeEEEeCCCeEEEEeCCc--e
Q 020019 194 KEWYKNLVGLNGIVYHPDGFLIVIHTFSGNLFKIDIVDGVGEGEEIKLIRVAGGPLSFGDGLELLSPTKLVVAGNPS--A 271 (332)
Q Consensus 194 p~~~~~~~~~nGi~~~~dG~Lyva~~~~~~i~~id~~~~~~~~~~~~~v~~~g~~~~~pdGi~~~~dG~l~va~~~~--~ 271 (332)
.....--+.++||+...++......+..++.++- . ..+ ..+.| .-.=..+.+|..||+.+|+.... .
T Consensus 214 -----h~~~il~C~lSPd~k~lat~ssdktv~iwn~~~~-~---kle-~~l~g-h~rWvWdc~FS~dg~YlvTassd~~~ 282 (311)
T KOG0315|consen 214 -----HNGHILRCLLSPDVKYLATCSSDKTVKIWNTDDF-F---KLE-LVLTG-HQRWVWDCAFSADGEYLVTASSDHTA 282 (311)
T ss_pred -----ccceEEEEEECCCCcEEEeecCCceEEEEecCCc-e---eeE-EEeec-CCceEEeeeeccCccEEEecCCCCce
Confidence 1123345679999977777777777776766643 1 111 22222 11235678899999988886432 2
Q ss_pred EEEEcCCCceEEEEEeeecCCCcccceEEEE
Q 020019 272 RLVESSDGWETAAVVAKFSGPVHRLATAATV 302 (332)
Q Consensus 272 ~~v~~~dg~~~~~~~~~~~~~~~~~pt~va~ 302 (332)
++-....+ +..... .+.++.+++++.
T Consensus 283 rlW~~~~~----k~v~qy-~gh~K~~vc~~l 308 (311)
T KOG0315|consen 283 RLWDLSAG----KEVRQY-QGHHKAAVCVAL 308 (311)
T ss_pred eecccccC----ceeeec-CCcccccEEEEe
Confidence 32234444 222222 233556677765
|
|
| >PRK04043 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=98.14 E-value=0.0031 Score=60.76 Aligned_cols=177 Identities=10% Similarity=0.059 Sum_probs=102.1
Q ss_pred ceEEcCCCC--EEEEEec--CCeEEEEECCCCCCCccceeeeEEecccCcCCCccceEEEeCCCCeEEEEEeCcCCCccc
Q 020019 49 CAKWDDSGR--RFIVSFL--DGGIGQVAVPDDYPPGTVLEEVTLVKDLELTGNGSLGLVLDHPRNRLLVVAADVFGNKYS 124 (332)
Q Consensus 49 gia~d~~g~--~~~~~~~--~g~I~~vd~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~vd~~~g~l~v~~~~~~~~~~~ 124 (332)
.+.|+|+|+ +||++.. ...||+++..+++. + .+...++ ......+.||..+|.+..... +..
T Consensus 192 ~p~wSpDG~~~i~y~s~~~~~~~Iyv~dl~tg~~-----~--~lt~~~g----~~~~~~~SPDG~~la~~~~~~---g~~ 257 (419)
T PRK04043 192 FPKWANKEQTAFYYTSYGERKPTLYKYNLYTGKK-----E--KIASSQG----MLVVSDVSKDGSKLLLTMAPK---GQP 257 (419)
T ss_pred eEEECCCCCcEEEEEEccCCCCEEEEEECCCCcE-----E--EEecCCC----cEEeeEECCCCCEEEEEEccC---CCc
Confidence 678999997 4555643 46799999987752 1 3332222 122345788633555543221 245
Q ss_pred eEEEEECCCCcEEEEEecCCCCCCCCCccceEECCCCc-EEEEeC--CCCeEEEEcCCCc-eEEEecCCCCCCcccccCc
Q 020019 125 AVAAYDLSTWNRLFLTQLSGPSDGKSCADDVTVDAEGN-AYVTDV--TGSKIWKVGVKGE-FLSIISSPLFTPKEWYKNL 200 (332)
Q Consensus 125 ~l~~~d~~~g~~~~~~~l~~~~~~~~~~ndiavd~dG~-lyvtd~--~~~~I~~v~~~g~-~~~~~~~~~~~~p~~~~~~ 200 (332)
.|+.+|.++++.......+ ..-....+.|||+ ||++.. +...||+++.++. ..++....
T Consensus 258 ~Iy~~dl~~g~~~~LT~~~------~~d~~p~~SPDG~~I~F~Sdr~g~~~Iy~~dl~~g~~~rlt~~g----------- 320 (419)
T PRK04043 258 DIYLYDTNTKTLTQITNYP------GIDVNGNFVEDDKRIVFVSDRLGYPNIFMKKLNSGSVEQVVFHG----------- 320 (419)
T ss_pred EEEEEECCCCcEEEcccCC------CccCccEECCCCCEEEEEECCCCCceEEEEECCCCCeEeCccCC-----------
Confidence 7999999887754432221 1122347899995 776643 3458999998854 43332111
Q ss_pred cccCeEEEccCc-eEEEEeCCC--------CeEEEEeCCCCCCccceeEEEEecCCCCCCCCeEEEeCCCe-EEEEe
Q 020019 201 VGLNGIVYHPDG-FLIVIHTFS--------GNLFKIDIVDGVGEGEEIKLIRVAGGPLSFGDGLELLSPTK-LVVAG 267 (332)
Q Consensus 201 ~~~nGi~~~~dG-~Lyva~~~~--------~~i~~id~~~~~~~~~~~~~v~~~g~~~~~pdGi~~~~dG~-l~va~ 267 (332)
..+ ..++||| .|.++.... .+|+.++++++ ..+.+... .. -....+.|||+ |+++.
T Consensus 321 -~~~-~~~SPDG~~Ia~~~~~~~~~~~~~~~~I~v~d~~~g-----~~~~LT~~--~~--~~~p~~SPDG~~I~f~~ 386 (419)
T PRK04043 321 -KNN-SSVSTYKNYIVYSSRETNNEFGKNTFNLYLISTNSD-----YIRRLTAN--GV--NQFPRFSSDGGSIMFIK 386 (419)
T ss_pred -CcC-ceECCCCCEEEEEEcCCCcccCCCCcEEEEEECCCC-----CeEECCCC--CC--cCCeEECCCCCEEEEEE
Confidence 012 4899999 665555432 47999999876 33333222 11 11356888876 54553
|
|
| >PRK03629 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=98.09 E-value=0.0046 Score=59.82 Aligned_cols=179 Identities=13% Similarity=0.171 Sum_probs=104.0
Q ss_pred cceEEcCCCCEE-EEEec--CCeEEEEECCCCCCCccceeeeEEecccCcCCCccceEEEeCCCCeEEEEEeCcCCCccc
Q 020019 48 ECAKWDDSGRRF-IVSFL--DGGIGQVAVPDDYPPGTVLEEVTLVKDLELTGNGSLGLVLDHPRNRLLVVAADVFGNKYS 124 (332)
Q Consensus 48 egia~d~~g~~~-~~~~~--~g~I~~vd~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~vd~~~g~l~v~~~~~~~~~~~ 124 (332)
..++|+|||+.+ |++.. ...|+.++..+++. + .+...++ ......++|+..+|+++.... +..
T Consensus 202 ~~p~wSPDG~~la~~s~~~g~~~i~i~dl~~G~~-----~--~l~~~~~----~~~~~~~SPDG~~La~~~~~~---g~~ 267 (429)
T PRK03629 202 MSPAWSPDGSKLAYVTFESGRSALVIQTLANGAV-----R--QVASFPR----HNGAPAFSPDGSKLAFALSKT---GSL 267 (429)
T ss_pred eeeEEcCCCCEEEEEEecCCCcEEEEEECCCCCe-----E--EccCCCC----CcCCeEECCCCCEEEEEEcCC---CCc
Confidence 468999999855 44432 35799999876652 1 2222222 233578899733455543211 234
Q ss_pred eEEEEECCCCcEEEEEecCCCCCCCCCccceEECCCCc-EE-EEeC-CCCeEEEEcCCCc-eEEEecCCCCCCcccccCc
Q 020019 125 AVAAYDLSTWNRLFLTQLSGPSDGKSCADDVTVDAEGN-AY-VTDV-TGSKIWKVGVKGE-FLSIISSPLFTPKEWYKNL 200 (332)
Q Consensus 125 ~l~~~d~~~g~~~~~~~l~~~~~~~~~~ndiavd~dG~-ly-vtd~-~~~~I~~v~~~g~-~~~~~~~~~~~~p~~~~~~ 200 (332)
.|+.+|.++++......- ........+.|||+ |+ .++. +...||+++.++. ..++....
T Consensus 268 ~I~~~d~~tg~~~~lt~~------~~~~~~~~wSPDG~~I~f~s~~~g~~~Iy~~d~~~g~~~~lt~~~----------- 330 (429)
T PRK03629 268 NLYVMDLASGQIRQVTDG------RSNNTEPTWFPDSQNLAYTSDQAGRPQVYKVNINGGAPQRITWEG----------- 330 (429)
T ss_pred EEEEEECCCCCEEEccCC------CCCcCceEECCCCCEEEEEeCCCCCceEEEEECCCCCeEEeecCC-----------
Confidence 699999998876533211 12345689999996 54 4443 3458999998754 33321110
Q ss_pred cccCeEEEccCc-eEEEEeCCC--CeEEEEeCCCCCCccceeEEEEecCCCCCCCCeEEEeCCCeEEEE
Q 020019 201 VGLNGIVYHPDG-FLIVIHTFS--GNLFKIDIVDGVGEGEEIKLIRVAGGPLSFGDGLELLSPTKLVVA 266 (332)
Q Consensus 201 ~~~nGi~~~~dG-~Lyva~~~~--~~i~~id~~~~~~~~~~~~~v~~~g~~~~~pdGi~~~~dG~l~va 266 (332)
......+++||| .|+++.... ..|+.++++++ ..+.+... .. -....+.+||+.++.
T Consensus 331 ~~~~~~~~SpDG~~Ia~~~~~~g~~~I~~~dl~~g-----~~~~Lt~~--~~--~~~p~~SpDG~~i~~ 390 (429)
T PRK03629 331 SQNQDADVSSDGKFMVMVSSNGGQQHIAKQDLATG-----GVQVLTDT--FL--DETPSIAPNGTMVIY 390 (429)
T ss_pred CCccCEEECCCCCEEEEEEccCCCceEEEEECCCC-----CeEEeCCC--CC--CCCceECCCCCEEEE
Confidence 122467899999 777665543 45888998876 33333311 11 123467888874433
|
|
| >PRK04922 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=98.08 E-value=0.0016 Score=63.03 Aligned_cols=179 Identities=16% Similarity=0.202 Sum_probs=102.8
Q ss_pred cceEEcCCCCEE-EEEec--CCeEEEEECCCCCCCccceeeeEEecccCcCCCccceEEEeCCCCeEEEEEeCcCCCccc
Q 020019 48 ECAKWDDSGRRF-IVSFL--DGGIGQVAVPDDYPPGTVLEEVTLVKDLELTGNGSLGLVLDHPRNRLLVVAADVFGNKYS 124 (332)
Q Consensus 48 egia~d~~g~~~-~~~~~--~g~I~~vd~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~vd~~~g~l~v~~~~~~~~~~~ 124 (332)
.+++|+|||+.+ |++.. ...|++++..+++. + .+...++ ......++++..+|+++.... +..
T Consensus 207 ~~p~wSpDg~~la~~s~~~~~~~l~~~dl~~g~~-----~--~l~~~~g----~~~~~~~SpDG~~l~~~~s~~---g~~ 272 (433)
T PRK04922 207 LSPAWSPDGKKLAYVSFERGRSAIYVQDLATGQR-----E--LVASFRG----INGAPSFSPDGRRLALTLSRD---GNP 272 (433)
T ss_pred ccccCCCCCCEEEEEecCCCCcEEEEEECCCCCE-----E--EeccCCC----CccCceECCCCCEEEEEEeCC---CCc
Confidence 467899999844 45432 34799999876652 1 2221122 223568888733455443211 234
Q ss_pred eEEEEECCCCcEEEEEecCCCCCCCCCccceEECCCCc-EEEE-eC-CCCeEEEEcCCC-ceEEEecCCCCCCcccccCc
Q 020019 125 AVAAYDLSTWNRLFLTQLSGPSDGKSCADDVTVDAEGN-AYVT-DV-TGSKIWKVGVKG-EFLSIISSPLFTPKEWYKNL 200 (332)
Q Consensus 125 ~l~~~d~~~g~~~~~~~l~~~~~~~~~~ndiavd~dG~-lyvt-d~-~~~~I~~v~~~g-~~~~~~~~~~~~~p~~~~~~ 200 (332)
.|+++|+++++....... .......++.|||+ ++++ +. +...||.++.++ +..++....
T Consensus 273 ~Iy~~d~~~g~~~~lt~~------~~~~~~~~~spDG~~l~f~sd~~g~~~iy~~dl~~g~~~~lt~~g----------- 335 (433)
T PRK04922 273 EIYVMDLGSRQLTRLTNH------FGIDTEPTWAPDGKSIYFTSDRGGRPQIYRVAASGGSAERLTFQG----------- 335 (433)
T ss_pred eEEEEECCCCCeEECccC------CCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCeEEeecCC-----------
Confidence 699999998875432211 12234578999986 5554 32 245799998764 433322111
Q ss_pred cccCeEEEccCc-eEEEEeCCC--CeEEEEeCCCCCCccceeEEEEecCCCCCCCCeEEEeCCCe-EEEE
Q 020019 201 VGLNGIVYHPDG-FLIVIHTFS--GNLFKIDIVDGVGEGEEIKLIRVAGGPLSFGDGLELLSPTK-LVVA 266 (332)
Q Consensus 201 ~~~nGi~~~~dG-~Lyva~~~~--~~i~~id~~~~~~~~~~~~~v~~~g~~~~~pdGi~~~~dG~-l~va 266 (332)
......+++||| .|+++...+ .+|+.+++.++ ..+.+. .+ . ......+.+||+ ++++
T Consensus 336 ~~~~~~~~SpDG~~Ia~~~~~~~~~~I~v~d~~~g-----~~~~Lt-~~-~--~~~~p~~spdG~~i~~~ 396 (433)
T PRK04922 336 NYNARASVSPDGKKIAMVHGSGGQYRIAVMDLSTG-----SVRTLT-PG-S--LDESPSFAPNGSMVLYA 396 (433)
T ss_pred CCccCEEECCCCCEEEEEECCCCceeEEEEECCCC-----CeEECC-CC-C--CCCCceECCCCCEEEEE
Confidence 112357999999 888775543 36888998866 233232 21 1 122357888887 3444
|
|
| >PRK02888 nitrous-oxide reductase; Validated | Back alignment and domain information |
|---|
Probab=98.08 E-value=0.00018 Score=71.05 Aligned_cols=139 Identities=13% Similarity=-0.008 Sum_probs=86.7
Q ss_pred ceEEEEECCC----C-cEEEEEecCCCCCCCCCccceEECCCCc-EEEEeCCCCeEEEEcCCCceEEEecCCCCC--Ccc
Q 020019 124 SAVAAYDLST----W-NRLFLTQLSGPSDGKSCADDVTVDAEGN-AYVTDVTGSKIWKVGVKGEFLSIISSPLFT--PKE 195 (332)
Q Consensus 124 ~~l~~~d~~~----g-~~~~~~~l~~~~~~~~~~ndiavd~dG~-lyvtd~~~~~I~~v~~~g~~~~~~~~~~~~--~p~ 195 (332)
+++.++|.++ + ++...+.. ..+|.|++++|||+ +|++....+.|..+|.......+.+.-.+. .-.
T Consensus 296 n~V~VID~~t~~~~~~~v~~yIPV------GKsPHGV~vSPDGkylyVanklS~tVSVIDv~k~k~~~~~~~~~~~~vva 369 (635)
T PRK02888 296 SKVPVVDGRKAANAGSALTRYVPV------PKNPHGVNTSPDGKYFIANGKLSPTVTVIDVRKLDDLFDGKIKPRDAVVA 369 (635)
T ss_pred CEEEEEECCccccCCcceEEEEEC------CCCccceEECCCCCEEEEeCCCCCcEEEEEChhhhhhhhccCCccceEEE
Confidence 3466777766 2 34443433 36899999999996 899999999999999763211110000000 000
Q ss_pred cccCccccCeEEEccCceEEEEeCCCCeEEEEeCCCC----CCc--cceeEEEEecC--CCCCCCCeEEEeCCCeEEEEe
Q 020019 196 WYKNLVGLNGIVYHPDGFLIVIHTFSGNLFKIDIVDG----VGE--GEEIKLIRVAG--GPLSFGDGLELLSPTKLVVAG 267 (332)
Q Consensus 196 ~~~~~~~~nGi~~~~dG~Lyva~~~~~~i~~id~~~~----~~~--~~~~~~v~~~g--~~~~~pdGi~~~~dG~l~va~ 267 (332)
..+-..+|-..+|+++|+.|++-...++|.++++++. +.+ ...+..+.+.- .++..+-|=..++||+.+++-
T Consensus 370 evevGlGPLHTaFDg~G~aytslf~dsqv~kwn~~~a~~~~~g~~~~~v~~k~dV~y~pgh~~~~~g~t~~~dgk~l~~~ 449 (635)
T PRK02888 370 EPELGLGPLHTAFDGRGNAYTTLFLDSQIVKWNIEAAIRAYKGEKVDPIVQKLDVHYQPGHNHASMGETKEADGKWLVSL 449 (635)
T ss_pred eeccCCCcceEEECCCCCEEEeEeecceeEEEehHHHHHHhccccCCcceecccCCCccceeeecCCCcCCCCCCEEEEc
Confidence 1123457889999999999999999999999998751 000 01233333310 123345566678999988885
Q ss_pred C
Q 020019 268 N 268 (332)
Q Consensus 268 ~ 268 (332)
|
T Consensus 450 n 450 (635)
T PRK02888 450 N 450 (635)
T ss_pred c
Confidence 4
|
|
| >PRK01742 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=98.07 E-value=0.003 Score=61.12 Aligned_cols=176 Identities=13% Similarity=0.208 Sum_probs=102.6
Q ss_pred ccceEEcCCCCEEE-EEec--CCeEEEEECCCCCCCccceeeeEEecccCcCCCccceEEEeCCCCeEEEEEeCcCCCcc
Q 020019 47 RECAKWDDSGRRFI-VSFL--DGGIGQVAVPDDYPPGTVLEEVTLVKDLELTGNGSLGLVLDHPRNRLLVVAADVFGNKY 123 (332)
Q Consensus 47 pegia~d~~g~~~~-~~~~--~g~I~~vd~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~vd~~~g~l~v~~~~~~~~~~ 123 (332)
...+.|+|||+.++ ++.. ..+|+.++..+++. + .+...++ ....+++.|+..+|+++.... +.
T Consensus 206 v~~p~wSPDG~~la~~s~~~~~~~i~i~dl~tg~~-----~--~l~~~~g----~~~~~~wSPDG~~La~~~~~~---g~ 271 (429)
T PRK01742 206 LMSPAWSPDGSKLAYVSFENKKSQLVVHDLRSGAR-----K--VVASFRG----HNGAPAFSPDGSRLAFASSKD---GV 271 (429)
T ss_pred cccceEcCCCCEEEEEEecCCCcEEEEEeCCCCce-----E--EEecCCC----ccCceeECCCCCEEEEEEecC---Cc
Confidence 35689999998554 4432 24799999876642 1 2221121 223578899733455543211 22
Q ss_pred ceEEEEECCCCcEEEEEecCCCCCCCCCccceEECCCCc-EEEEeC--CCCeEEEEcCCCceEEEecCCCCCCcccccCc
Q 020019 124 SAVAAYDLSTWNRLFLTQLSGPSDGKSCADDVTVDAEGN-AYVTDV--TGSKIWKVGVKGEFLSIISSPLFTPKEWYKNL 200 (332)
Q Consensus 124 ~~l~~~d~~~g~~~~~~~l~~~~~~~~~~ndiavd~dG~-lyvtd~--~~~~I~~v~~~g~~~~~~~~~~~~~p~~~~~~ 200 (332)
..|+.+|.++++...... ........++.|||+ |+++.. +...||.++.++.....+..
T Consensus 272 ~~Iy~~d~~~~~~~~lt~------~~~~~~~~~wSpDG~~i~f~s~~~g~~~I~~~~~~~~~~~~l~~------------ 333 (429)
T PRK01742 272 LNIYVMGANGGTPSQLTS------GAGNNTEPSWSPDGQSILFTSDRSGSPQVYRMSASGGGASLVGG------------ 333 (429)
T ss_pred EEEEEEECCCCCeEeecc------CCCCcCCEEECCCCCEEEEEECCCCCceEEEEECCCCCeEEecC------------
Confidence 358888988776543221 122345689999996 665532 45689999887653333211
Q ss_pred cccCeEEEccCc-eEEEEeCCCCeEEEEeCCCCCCccceeEEEEecCCCCCCCCeEEEeCCCeEEEE
Q 020019 201 VGLNGIVYHPDG-FLIVIHTFSGNLFKIDIVDGVGEGEEIKLIRVAGGPLSFGDGLELLSPTKLVVA 266 (332)
Q Consensus 201 ~~~nGi~~~~dG-~Lyva~~~~~~i~~id~~~~~~~~~~~~~v~~~g~~~~~pdGi~~~~dG~l~va 266 (332)
.+ ....++||| .|+++.. ..++++|+.+++ .+.+. . .. .-....+.|||++++.
T Consensus 334 ~~-~~~~~SpDG~~ia~~~~--~~i~~~Dl~~g~-----~~~lt-~--~~-~~~~~~~sPdG~~i~~ 388 (429)
T PRK01742 334 RG-YSAQISADGKTLVMING--DNVVKQDLTSGS-----TEVLS-S--TF-LDESPSISPNGIMIIY 388 (429)
T ss_pred CC-CCccCCCCCCEEEEEcC--CCEEEEECCCCC-----eEEec-C--CC-CCCCceECCCCCEEEE
Confidence 01 246789999 7777644 568889988762 22222 1 11 1134668899875555
|
|
| >PRK11138 outer membrane biogenesis protein BamB; Provisional | Back alignment and domain information |
|---|
Probab=98.07 E-value=0.0032 Score=60.15 Aligned_cols=162 Identities=15% Similarity=0.224 Sum_probs=86.7
Q ss_pred ceEEEEECCCCcEEEEEecCCCCCCCC--Cc----cceEECCCCcEEEEeCCCCeEEEEcCC-CceEEEecCCCCCCccc
Q 020019 124 SAVAAYDLSTWNRLFLTQLSGPSDGKS--CA----DDVTVDAEGNAYVTDVTGSKIWKVGVK-GEFLSIISSPLFTPKEW 196 (332)
Q Consensus 124 ~~l~~~d~~~g~~~~~~~l~~~~~~~~--~~----ndiavd~dG~lyvtd~~~~~I~~v~~~-g~~~~~~~~~~~~~p~~ 196 (332)
+.++.+|.++|+..+..++..+..... .. ...++. +|.+|++.. .+.++.+|+. |+. .+- .+ +.
T Consensus 215 g~v~a~d~~~G~~~W~~~~~~~~~~~~~~~~~~~~~sP~v~-~~~vy~~~~-~g~l~ald~~tG~~-~W~-~~-~~---- 285 (394)
T PRK11138 215 GRVSAVLMEQGQLIWQQRISQPTGATEIDRLVDVDTTPVVV-GGVVYALAY-NGNLVALDLRSGQI-VWK-RE-YG---- 285 (394)
T ss_pred CEEEEEEccCChhhheeccccCCCccchhcccccCCCcEEE-CCEEEEEEc-CCeEEEEECCCCCE-EEe-ec-CC----
Confidence 467888999998776655432211000 01 112222 467898764 5889999976 553 332 11 11
Q ss_pred ccCccccCeEEEccCceEEEEeCCCCeEEEEeCCCCCCccceeEE-EE-ecCCCCCCCCeEEEeCCCeEEEEeCCc-eEE
Q 020019 197 YKNLVGLNGIVYHPDGFLIVIHTFSGNLFKIDIVDGVGEGEEIKL-IR-VAGGPLSFGDGLELLSPTKLVVAGNPS-ARL 273 (332)
Q Consensus 197 ~~~~~~~nGi~~~~dG~Lyva~~~~~~i~~id~~~~~~~~~~~~~-v~-~~g~~~~~pdGi~~~~dG~l~va~~~~-~~~ 273 (332)
.+..++.. +++||+... .++++.+++++++ +.. .. ..+.....| ++ .+|.||+.+... ...
T Consensus 286 -----~~~~~~~~-~~~vy~~~~-~g~l~ald~~tG~-----~~W~~~~~~~~~~~sp---~v-~~g~l~v~~~~G~l~~ 349 (394)
T PRK11138 286 -----SVNDFAVD-GGRIYLVDQ-NDRVYALDTRGGV-----ELWSQSDLLHRLLTAP---VL-YNGYLVVGDSEGYLHW 349 (394)
T ss_pred -----CccCcEEE-CCEEEEEcC-CCeEEEEECCCCc-----EEEcccccCCCcccCC---EE-ECCEEEEEeCCCEEEE
Confidence 12234443 569999874 6789999998872 211 11 111111222 23 368999997654 333
Q ss_pred EEcCCCceEEEEEeeecCCCcccceEEEEECCeEEEEEecC
Q 020019 274 VESSDGWETAAVVAKFSGPVHRLATAATVKDGRVYLNHMLG 314 (332)
Q Consensus 274 v~~~dg~~~~~~~~~~~~~~~~~pt~va~~~g~lyv~~~~g 314 (332)
+...+| +++.......-....+..+.+++|||..+-|
T Consensus 350 ld~~tG----~~~~~~~~~~~~~~s~P~~~~~~l~v~t~~G 386 (394)
T PRK11138 350 INREDG----RFVAQQKVDSSGFLSEPVVADDKLLIQARDG 386 (394)
T ss_pred EECCCC----CEEEEEEcCCCcceeCCEEECCEEEEEeCCc
Confidence 455667 3332222111112233445788999976655
|
|
| >TIGR03118 PEPCTERM_chp_1 conserved hypothetical protein TIGR03118 | Back alignment and domain information |
|---|
Probab=98.06 E-value=0.0085 Score=54.10 Aligned_cols=253 Identities=11% Similarity=0.055 Sum_probs=136.2
Q ss_pred ccccceEEcCCCCEEEEEecCCe--EEEEECCCCC-CCccceeeeEEecccCcC-CCccceEEEeCCCCeEEEEEeCcCC
Q 020019 45 FFRECAKWDDSGRRFIVSFLDGG--IGQVAVPDDY-PPGTVLEEVTLVKDLELT-GNGSLGLVLDHPRNRLLVVAADVFG 120 (332)
Q Consensus 45 ~~pegia~d~~g~~~~~~~~~g~--I~~vd~~~~~-~~~~~~~~~~~~~~~~~~-~~~~~gi~vd~~~g~l~v~~~~~~~ 120 (332)
..|.||++.|.+-+|+++-.++. +|-..+++.. .+ +.+. +++...++.. ...|.|+.++.. .. |++......
T Consensus 23 ~N~WGia~~p~~~~WVadngT~~~TlYdg~~~~~~g~~-~~L~-vtiP~~~~~~~~~~PTGiVfN~~-~~-F~vt~~g~~ 98 (336)
T TIGR03118 23 RNAWGLSYRPGGPFWVANTGTGTATLYVGNPDTQPLVQ-DPLV-VVIPAPPPLAAEGTPTGQVFNGS-DT-FVVSGEGIT 98 (336)
T ss_pred cccceeEecCCCCEEEecCCcceEEeecCCcccccCCc-cceE-EEecCCCCCCCCCCccEEEEeCC-Cc-eEEcCCCcc
Confidence 38899999999999998855554 4544433211 00 0111 1222112211 135888888864 22 433321100
Q ss_pred --------CccceEEEEECCCCcE---EEEEecCCCCCCCCCccceEECCC--C-cEEEEeCCCCeEEEEcCCCceEEEe
Q 020019 121 --------NKYSAVAAYDLSTWNR---LFLTQLSGPSDGKSCADDVTVDAE--G-NAYVTDVTGSKIWKVGVKGEFLSII 186 (332)
Q Consensus 121 --------~~~~~l~~~d~~~g~~---~~~~~l~~~~~~~~~~ndiavd~d--G-~lyvtd~~~~~I~~v~~~g~~~~~~ 186 (332)
.+.+.|..|.+.-+.. ...+.+.. ......-.++|+... + .||.+|..+++|-++|..=+....
T Consensus 99 ~~a~Fif~tEdGTisaW~p~v~~t~~~~~~~~~d~-s~~gavYkGLAi~~~~~~~~LYaadF~~g~IDVFd~~f~~~~~- 176 (336)
T TIGR03118 99 GPSRFLFVTEDGTLSGWAPALGTTRMTRAEIVVDA-SQQGNVYKGLAVGPTGGGDYLYAANFRQGRIDVFKGSFRPPPL- 176 (336)
T ss_pred cceeEEEEeCCceEEeecCcCCcccccccEEEEcc-CCCcceeeeeEEeecCCCceEEEeccCCCceEEecCccccccC-
Confidence 1234455555432211 11122211 112345567777754 3 499999999999999765332221
Q ss_pred cCCCCCCcccccCccccCeEEEccCceEEEEeCC-------------CCeEEEEeCCCCCCccceeEEEEecCCCCCCCC
Q 020019 187 SSPLFTPKEWYKNLVGLNGIVYHPDGFLIVIHTF-------------SGNLFKIDIVDGVGEGEEIKLIRVAGGPLSFGD 253 (332)
Q Consensus 187 ~~~~~~~p~~~~~~~~~nGi~~~~dG~Lyva~~~-------------~~~i~~id~~~~~~~~~~~~~v~~~g~~~~~pd 253 (332)
...|..|. .|....|-+|.-- +++|||+-.. .+.|-.++++.. .++++... ..+..|.
T Consensus 177 -~g~F~DP~-iPagyAPFnIqni-g~~lyVtYA~qd~~~~d~v~G~G~G~VdvFd~~G~-----l~~r~as~-g~LNaPW 247 (336)
T TIGR03118 177 -PGSFIDPA-LPAGYAPFNVQNL-GGTLYVTYAQQDADRNDEVAGAGLGYVNVFTLNGQ-----LLRRVASS-GRLNAPW 247 (336)
T ss_pred -CCCccCCC-CCCCCCCcceEEE-CCeEEEEEEecCCcccccccCCCcceEEEEcCCCc-----EEEEeccC-CcccCCc
Confidence 23454442 3456678888653 5699987542 346677777743 67777655 5789999
Q ss_pred eEEEeC------CCeEEEEeCCceEE-EEc-CCCceEEEEEeeecCC-CcccceEEEE-E------CCeEEEEEe
Q 020019 254 GLELLS------PTKLVVAGNPSARL-VES-SDGWETAAVVAKFSGP-VHRLATAATV-K------DGRVYLNHM 312 (332)
Q Consensus 254 Gi~~~~------dG~l~va~~~~~~~-v~~-~dg~~~~~~~~~~~~~-~~~~pt~va~-~------~g~lyv~~~ 312 (332)
||++.| .|.|+|.+....++ .+. .+|.-.+.+...-..| ..+.-.++++ . -++||.++-
T Consensus 248 G~a~APa~FG~~sg~lLVGNFGDG~InaFD~~sG~~~g~L~~~~G~pi~i~GLWgL~fGng~~~~~~ntLyFaAG 322 (336)
T TIGR03118 248 GLAIAPESFGSLSGALLVGNFGDGTINAYDPQSGAQLGQLLDPDNHPVKVDGLWSLTFGNGVSGGSANYLYFTAG 322 (336)
T ss_pred eeeeChhhhCCCCCCeEEeecCCceeEEecCCCCceeeeecCCCCCeEEecCeEEeeeCCCcCCCCcceEEEEeC
Confidence 999963 47899998654332 233 3463334443211000 0112245676 2 148888665
|
This model describes and uncharacterized conserved hypothetical protein. Members are found with the C-terminal putative exosortase interaction domain, PEP-CTERM, in Nitrosospira multiformis, Rhodoferax ferrireducens, Solibacter usitatus Ellin6076, and Acidobacteria bacterium Ellin345. It is found without the PEP-CTERM domain in several other species, including Burkholderia ambifaria, Gloeobacter violaceus PCC 7421, and three copies in the Acanthamoeba polyphaga mimivirus. |
| >PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function | Back alignment and domain information |
|---|
Probab=98.05 E-value=0.00054 Score=62.19 Aligned_cols=151 Identities=17% Similarity=0.118 Sum_probs=98.8
Q ss_pred ccceEEEeCCCCeEEEEEeCcCCCccceEEEEECCCCcEEEEEecCCCCCCCCCccceEECCCCc-EEEEeC----CCCe
Q 020019 98 GSLGLVLDHPRNRLLVVAADVFGNKYSAVAAYDLSTWNRLFLTQLSGPSDGKSCADDVTVDAEGN-AYVTDV----TGSK 172 (332)
Q Consensus 98 ~~~gi~vd~~~g~l~v~~~~~~~~~~~~l~~~d~~~g~~~~~~~l~~~~~~~~~~ndiavd~dG~-lyvtd~----~~~~ 172 (332)
...+++++|.+.. .|+.... +...+.+||.++|+......- .++..|-..-++.+||+ ||.|+. +.|.
T Consensus 6 RgH~~a~~p~~~~-avafaRR---PG~~~~v~D~~~g~~~~~~~a---~~gRHFyGHg~fs~dG~~LytTEnd~~~g~G~ 78 (305)
T PF07433_consen 6 RGHGVAAHPTRPE-AVAFARR---PGTFALVFDCRTGQLLQRLWA---PPGRHFYGHGVFSPDGRLLYTTENDYETGRGV 78 (305)
T ss_pred cccceeeCCCCCe-EEEEEeC---CCcEEEEEEcCCCceeeEEcC---CCCCEEecCEEEcCCCCEEEEeccccCCCcEE
Confidence 4578899996444 4444332 234678899999998765433 23457777889999997 777753 4678
Q ss_pred EEEEcCCCceEEEecCCCCCCcccccCccccCeEEEccCc-eEEEEeCC------C-----------CeEEEEeCCCCCC
Q 020019 173 IWKVGVKGEFLSIISSPLFTPKEWYKNLVGLNGIVYHPDG-FLIVIHTF------S-----------GNLFKIDIVDGVG 234 (332)
Q Consensus 173 I~~v~~~g~~~~~~~~~~~~~p~~~~~~~~~nGi~~~~dG-~Lyva~~~------~-----------~~i~~id~~~~~~ 234 (332)
|-++|....+.++-+-+. ...+|.-|.+.||| +|.|++-+ + ..|..+|..+|
T Consensus 79 IgVyd~~~~~~ri~E~~s--------~GIGPHel~l~pDG~tLvVANGGI~Thpd~GR~kLNl~tM~psL~~ld~~sG-- 148 (305)
T PF07433_consen 79 IGVYDAARGYRRIGEFPS--------HGIGPHELLLMPDGETLVVANGGIETHPDSGRAKLNLDTMQPSLVYLDARSG-- 148 (305)
T ss_pred EEEEECcCCcEEEeEecC--------CCcChhhEEEcCCCCEEEEEcCCCccCcccCceecChhhcCCceEEEecCCC--
Confidence 888988755555433222 34678899999999 99999874 1 12333444444
Q ss_pred ccceeEEEEecC-CCCCCCCeEEEeCCCeEEEEe
Q 020019 235 EGEEIKLIRVAG-GPLSFGDGLELLSPTKLVVAG 267 (332)
Q Consensus 235 ~~~~~~~v~~~g-~~~~~pdGi~~~~dG~l~va~ 267 (332)
+.+..+.++. -...+.--|+++++|.++++.
T Consensus 149 --~ll~q~~Lp~~~~~lSiRHLa~~~~G~V~~a~ 180 (305)
T PF07433_consen 149 --ALLEQVELPPDLHQLSIRHLAVDGDGTVAFAM 180 (305)
T ss_pred --ceeeeeecCccccccceeeEEecCCCcEEEEE
Confidence 2344444431 011346688999999999995
|
|
| >PRK02889 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=98.03 E-value=0.0049 Score=59.56 Aligned_cols=179 Identities=15% Similarity=0.187 Sum_probs=101.8
Q ss_pred ceEEcCCCCEE-EEEec--CCeEEEEECCCCCCCccceeeeEEecccCcCCCccceEEEeCCCCeEEEEEeCcCCCccce
Q 020019 49 CAKWDDSGRRF-IVSFL--DGGIGQVAVPDDYPPGTVLEEVTLVKDLELTGNGSLGLVLDHPRNRLLVVAADVFGNKYSA 125 (332)
Q Consensus 49 gia~d~~g~~~-~~~~~--~g~I~~vd~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~vd~~~g~l~v~~~~~~~~~~~~ 125 (332)
.++|+|||+.+ |++.. ...|+.++..+++. . .+...++ .....++.|+..+|+++.... +...
T Consensus 200 ~p~wSPDG~~la~~s~~~~~~~I~~~dl~~g~~-----~--~l~~~~g----~~~~~~~SPDG~~la~~~~~~---g~~~ 265 (427)
T PRK02889 200 SPAWSPDGTKLAYVSFESKKPVVYVHDLATGRR-----R--VVANFKG----SNSAPAWSPDGRTLAVALSRD---GNSQ 265 (427)
T ss_pred cceEcCCCCEEEEEEccCCCcEEEEEECCCCCE-----E--EeecCCC----CccceEECCCCCEEEEEEccC---CCce
Confidence 57899999855 44432 34699999887652 1 2221122 234678899733555443221 2356
Q ss_pred EEEEECCCCcEEEEEecCCCCCCCCCccceEECCCCc-EEEE-eC-CCCeEEEEcCCCc-eEEEecCCCCCCcccccCcc
Q 020019 126 VAAYDLSTWNRLFLTQLSGPSDGKSCADDVTVDAEGN-AYVT-DV-TGSKIWKVGVKGE-FLSIISSPLFTPKEWYKNLV 201 (332)
Q Consensus 126 l~~~d~~~g~~~~~~~l~~~~~~~~~~ndiavd~dG~-lyvt-d~-~~~~I~~v~~~g~-~~~~~~~~~~~~p~~~~~~~ 201 (332)
|+.+|.++++... +.. . ........+.|||+ ++++ +. +...||.++.++. ..++.... .
T Consensus 266 Iy~~d~~~~~~~~---lt~-~--~~~~~~~~wSpDG~~l~f~s~~~g~~~Iy~~~~~~g~~~~lt~~g-----------~ 328 (427)
T PRK02889 266 IYTVNADGSGLRR---LTQ-S--SGIDTEPFFSPDGRSIYFTSDRGGAPQIYRMPASGGAAQRVTFTG-----------S 328 (427)
T ss_pred EEEEECCCCCcEE---CCC-C--CCCCcCeEEcCCCCEEEEEecCCCCcEEEEEECCCCceEEEecCC-----------C
Confidence 8888987766432 211 1 12234578999996 5544 42 3568999987643 33322111 0
Q ss_pred ccCeEEEccCc-eEEEEeCCCC--eEEEEeCCCCCCccceeEEEEecCCCCCCCCeEEEeCCCe-EEEEe
Q 020019 202 GLNGIVYHPDG-FLIVIHTFSG--NLFKIDIVDGVGEGEEIKLIRVAGGPLSFGDGLELLSPTK-LVVAG 267 (332)
Q Consensus 202 ~~nGi~~~~dG-~Lyva~~~~~--~i~~id~~~~~~~~~~~~~v~~~g~~~~~pdGi~~~~dG~-l~va~ 267 (332)
......++||| .|+++....+ +|+.+++.++ ..+.+... . ......+.+||+ |+++.
T Consensus 329 ~~~~~~~SpDG~~Ia~~s~~~g~~~I~v~d~~~g-----~~~~lt~~--~--~~~~p~~spdg~~l~~~~ 389 (427)
T PRK02889 329 YNTSPRISPDGKLLAYISRVGGAFKLYVQDLATG-----QVTALTDT--T--RDESPSFAPNGRYILYAT 389 (427)
T ss_pred CcCceEECCCCCEEEEEEccCCcEEEEEEECCCC-----CeEEccCC--C--CccCceECCCCCEEEEEE
Confidence 12246899999 7776654433 6899998876 23333211 1 123467888876 44443
|
|
| >PRK04792 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=98.02 E-value=0.0094 Score=57.99 Aligned_cols=141 Identities=14% Similarity=0.224 Sum_probs=82.7
Q ss_pred ceEEEeCCCCeEEEEEeCcCCCccceEEEEECCCCcEEEEEecCCCCCCCCCccceEECCCCc-EEEEeCC--CCeEEEE
Q 020019 100 LGLVLDHPRNRLLVVAADVFGNKYSAVAAYDLSTWNRLFLTQLSGPSDGKSCADDVTVDAEGN-AYVTDVT--GSKIWKV 176 (332)
Q Consensus 100 ~gi~vd~~~g~l~v~~~~~~~~~~~~l~~~d~~~g~~~~~~~l~~~~~~~~~~ndiavd~dG~-lyvtd~~--~~~I~~v 176 (332)
....++|+..+|+++.... +...|+++|+++++......+. ......++.|||+ |+++... ...||.+
T Consensus 221 ~~p~wSPDG~~La~~s~~~---g~~~L~~~dl~tg~~~~lt~~~------g~~~~~~wSPDG~~La~~~~~~g~~~Iy~~ 291 (448)
T PRK04792 221 MSPAWSPDGRKLAYVSFEN---RKAEIFVQDIYTQVREKVTSFP------GINGAPRFSPDGKKLALVLSKDGQPEIYVV 291 (448)
T ss_pred cCceECCCCCEEEEEEecC---CCcEEEEEECCCCCeEEecCCC------CCcCCeeECCCCCEEEEEEeCCCCeEEEEE
Confidence 4568888733454443321 2357999999988765433331 1223578999996 7665333 3469999
Q ss_pred cCCCceEEEecCCCCCCcccccCccccCeEEEccCc-eEEEEeCC--CCeEEEEeCCCCCCccceeEEEEecCCCCCCCC
Q 020019 177 GVKGEFLSIISSPLFTPKEWYKNLVGLNGIVYHPDG-FLIVIHTF--SGNLFKIDIVDGVGEGEEIKLIRVAGGPLSFGD 253 (332)
Q Consensus 177 ~~~g~~~~~~~~~~~~~p~~~~~~~~~nGi~~~~dG-~Lyva~~~--~~~i~~id~~~~~~~~~~~~~v~~~g~~~~~pd 253 (332)
+.++.....+.... ......+|+||| .|+++... ..+||+++++++ ..+.+...+ ....
T Consensus 292 dl~tg~~~~lt~~~----------~~~~~p~wSpDG~~I~f~s~~~g~~~Iy~~dl~~g-----~~~~Lt~~g---~~~~ 353 (448)
T PRK04792 292 DIATKALTRITRHR----------AIDTEPSWHPDGKSLIFTSERGGKPQIYRVNLASG-----KVSRLTFEG---EQNL 353 (448)
T ss_pred ECCCCCeEECccCC----------CCccceEECCCCCEEEEEECCCCCceEEEEECCCC-----CEEEEecCC---CCCc
Confidence 98754332221110 123456899999 77766543 357999999876 334343332 1123
Q ss_pred eEEEeCCCe-EEEEe
Q 020019 254 GLELLSPTK-LVVAG 267 (332)
Q Consensus 254 Gi~~~~dG~-l~va~ 267 (332)
+.++.+||+ |+++.
T Consensus 354 ~~~~SpDG~~l~~~~ 368 (448)
T PRK04792 354 GGSITPDGRSMIMVN 368 (448)
T ss_pred CeeECCCCCEEEEEE
Confidence 457888875 55554
|
|
| >TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL | Back alignment and domain information |
|---|
Probab=98.02 E-value=0.0069 Score=57.31 Aligned_cols=163 Identities=20% Similarity=0.237 Sum_probs=86.3
Q ss_pred ceEEEEECCCCcEEEEEecCCCCCCC--C----CccceEECCCCcEEEEeCCCCeEEEEcCC-CceEEEecCCCCCCccc
Q 020019 124 SAVAAYDLSTWNRLFLTQLSGPSDGK--S----CADDVTVDAEGNAYVTDVTGSKIWKVGVK-GEFLSIISSPLFTPKEW 196 (332)
Q Consensus 124 ~~l~~~d~~~g~~~~~~~l~~~~~~~--~----~~ndiavd~dG~lyvtd~~~~~I~~v~~~-g~~~~~~~~~~~~~p~~ 196 (332)
+.+..+|+++|+..+...+..+.... . ......++ ++.+|++.. .+.++.++.+ |+.. +- ....
T Consensus 200 g~v~ald~~tG~~~W~~~~~~~~g~~~~~~~~~~~~~p~~~-~~~vy~~~~-~g~l~a~d~~tG~~~-W~-~~~~----- 270 (377)
T TIGR03300 200 GKLVALDLQTGQPLWEQRVALPKGRTELERLVDVDGDPVVD-GGQVYAVSY-QGRVAALDLRSGRVL-WK-RDAS----- 270 (377)
T ss_pred CEEEEEEccCCCEeeeeccccCCCCCchhhhhccCCccEEE-CCEEEEEEc-CCEEEEEECCCCcEE-Ee-eccC-----
Confidence 57889999999887665543221100 0 11122333 467888764 5789999975 5533 21 1110
Q ss_pred ccCccccCeEEEccCceEEEEeCCCCeEEEEeCCCCCCccceeEEE-EecCCCCCCCCeEEEeCCCeEEEEeCCc-eEEE
Q 020019 197 YKNLVGLNGIVYHPDGFLIVIHTFSGNLFKIDIVDGVGEGEEIKLI-RVAGGPLSFGDGLELLSPTKLVVAGNPS-ARLV 274 (332)
Q Consensus 197 ~~~~~~~nGi~~~~dG~Lyva~~~~~~i~~id~~~~~~~~~~~~~v-~~~g~~~~~pdGi~~~~dG~l~va~~~~-~~~v 274 (332)
.....+++ ++++|+.. .+++|+.++..+++ .+-.. ...+.....| .+ .++.||+.+... ...+
T Consensus 271 -----~~~~p~~~-~~~vyv~~-~~G~l~~~d~~tG~----~~W~~~~~~~~~~ssp---~i-~g~~l~~~~~~G~l~~~ 335 (377)
T TIGR03300 271 -----SYQGPAVD-DNRLYVTD-ADGVVVALDRRSGS----ELWKNDELKYRQLTAP---AV-VGGYLVVGDFEGYLHWL 335 (377)
T ss_pred -----CccCceEe-CCEEEEEC-CCCeEEEEECCCCc----EEEccccccCCccccC---EE-ECCEEEEEeCCCEEEEE
Confidence 11233443 56899885 56889999998772 22111 1121112223 23 357888887443 3334
Q ss_pred EcCCCceEEEEEeeecCCCcccceEEEEECCeEEEEEecC
Q 020019 275 ESSDGWETAAVVAKFSGPVHRLATAATVKDGRVYLNHMLG 314 (332)
Q Consensus 275 ~~~dg~~~~~~~~~~~~~~~~~pt~va~~~g~lyv~~~~g 314 (332)
...+| +++.....+.-....+.++.+++|||..+-|
T Consensus 336 d~~tG----~~~~~~~~~~~~~~~sp~~~~~~l~v~~~dG 371 (377)
T TIGR03300 336 SREDG----SFVARLKTDGSGIASPPVVVGDGLLVQTRDG 371 (377)
T ss_pred ECCCC----CEEEEEEcCCCccccCCEEECCEEEEEeCCc
Confidence 45556 3333332111112233455778899976654
|
Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ. |
| >TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB | Back alignment and domain information |
|---|
Probab=98.00 E-value=0.0081 Score=57.50 Aligned_cols=180 Identities=13% Similarity=0.149 Sum_probs=102.1
Q ss_pred cceEEcCCCCEEEEE-ec--CCeEEEEECCCCCCCccceeeeEEecccCcCCCccceEEEeCCCCeEEEEEeCcCCCccc
Q 020019 48 ECAKWDDSGRRFIVS-FL--DGGIGQVAVPDDYPPGTVLEEVTLVKDLELTGNGSLGLVLDHPRNRLLVVAADVFGNKYS 124 (332)
Q Consensus 48 egia~d~~g~~~~~~-~~--~g~I~~vd~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~vd~~~g~l~v~~~~~~~~~~~ 124 (332)
..++|+++|+.++.. .. ...|+.++..+++. . .+....+ ....+++.++...++++.... +..
T Consensus 193 ~~p~~Spdg~~la~~~~~~~~~~i~v~d~~~g~~-----~--~~~~~~~----~~~~~~~spDg~~l~~~~~~~---~~~ 258 (417)
T TIGR02800 193 LSPAWSPDGQKLAYVSFESGKPEIYVQDLATGQR-----E--KVASFPG----MNGAPAFSPDGSKLAVSLSKD---GNP 258 (417)
T ss_pred ecccCCCCCCEEEEEEcCCCCcEEEEEECCCCCE-----E--EeecCCC----CccceEECCCCCEEEEEECCC---CCc
Confidence 346799999865443 32 25799999876652 1 2221111 234578888734566553221 234
Q ss_pred eEEEEECCCCcEEEEEecCCCCCCCCCccceEECCCCc-EEEE-eC-CCCeEEEEcCCCc-eEEEecCCCCCCcccccCc
Q 020019 125 AVAAYDLSTWNRLFLTQLSGPSDGKSCADDVTVDAEGN-AYVT-DV-TGSKIWKVGVKGE-FLSIISSPLFTPKEWYKNL 200 (332)
Q Consensus 125 ~l~~~d~~~g~~~~~~~l~~~~~~~~~~ndiavd~dG~-lyvt-d~-~~~~I~~v~~~g~-~~~~~~~~~~~~p~~~~~~ 200 (332)
.|+.+|+++++....... ........+.+||+ |+++ +. +...||.++.++. ..++....
T Consensus 259 ~i~~~d~~~~~~~~l~~~------~~~~~~~~~s~dg~~l~~~s~~~g~~~iy~~d~~~~~~~~l~~~~----------- 321 (417)
T TIGR02800 259 DIYVMDLDGKQLTRLTNG------PGIDTEPSWSPDGKSIAFTSDRGGSPQIYMMDADGGEVRRLTFRG----------- 321 (417)
T ss_pred cEEEEECCCCCEEECCCC------CCCCCCEEECCCCCEEEEEECCCCCceEEEEECCCCCEEEeecCC-----------
Confidence 689999988765432211 11223457888986 5554 32 3458999998754 33221111
Q ss_pred cccCeEEEccCc-eEEEEeCCC--CeEEEEeCCCCCCccceeEEEEecCCCCCCCCeEEEeCCCe-EEEEe
Q 020019 201 VGLNGIVYHPDG-FLIVIHTFS--GNLFKIDIVDGVGEGEEIKLIRVAGGPLSFGDGLELLSPTK-LVVAG 267 (332)
Q Consensus 201 ~~~nGi~~~~dG-~Lyva~~~~--~~i~~id~~~~~~~~~~~~~v~~~g~~~~~pdGi~~~~dG~-l~va~ 267 (332)
......++++|| .|+++.... .+|+.+++.++ ..+.+... .......+.+||+ |+++.
T Consensus 322 ~~~~~~~~spdg~~i~~~~~~~~~~~i~~~d~~~~-----~~~~l~~~----~~~~~p~~spdg~~l~~~~ 383 (417)
T TIGR02800 322 GYNASPSWSPDGDLIAFVHREGGGFNIAVMDLDGG-----GERVLTDT----GLDESPSFAPNGRMILYAT 383 (417)
T ss_pred CCccCeEECCCCCEEEEEEccCCceEEEEEeCCCC-----CeEEccCC----CCCCCceECCCCCEEEEEE
Confidence 123467899999 777776543 37899998865 33333221 1123446778865 54443
|
The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear. |
| >PF13449 Phytase-like: Esterase-like activity of phytase | Back alignment and domain information |
|---|
Probab=97.99 E-value=0.00092 Score=62.23 Aligned_cols=167 Identities=17% Similarity=0.220 Sum_probs=97.8
Q ss_pred ccceEEEeCCCCeEEEEEeCcCCCccceEEEEECCC--C---cE--EEEEecCCCCC-----CCCCccceEECCCCcEEE
Q 020019 98 GSLGLVLDHPRNRLLVVAADVFGNKYSAVAAYDLST--W---NR--LFLTQLSGPSD-----GKSCADDVTVDAEGNAYV 165 (332)
Q Consensus 98 ~~~gi~vd~~~g~l~v~~~~~~~~~~~~l~~~d~~~--g---~~--~~~~~l~~~~~-----~~~~~ndiavd~dG~lyv 165 (332)
+-.||.++++.+++|+..-.........++.++... + .+ .....+..+.. ...-+-+|++.++|.+||
T Consensus 21 GlSgl~~~~~~~~~~avSD~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~G~~~~~~~~D~Egi~~~~~g~~~i 100 (326)
T PF13449_consen 21 GLSGLDYDPDDGRFYAVSDRGPNKGPPRFYTFRIDYDQGGIGGVTILDMIPLRDPDGQPFPKNGLDPEGIAVPPDGSFWI 100 (326)
T ss_pred cEeeEEEeCCCCEEEEEECCCCCCCCCcEEEEEeeccCCCccceEeccceeccCCCCCcCCcCCCChhHeEEecCCCEEE
Confidence 567999996558877664322211122345444332 1 11 11223322210 011355899988899999
Q ss_pred EeCCC------CeEEEEcCCCceEEEecCCC-CC-Cc---ccccCccccCeEEEccCc-eEEEEeCCC------------
Q 020019 166 TDVTG------SKIWKVGVKGEFLSIISSPL-FT-PK---EWYKNLVGLNGIVYHPDG-FLIVIHTFS------------ 221 (332)
Q Consensus 166 td~~~------~~I~~v~~~g~~~~~~~~~~-~~-~p---~~~~~~~~~nGi~~~~dG-~Lyva~~~~------------ 221 (332)
++... +.|++++.+|+....+..+. +. .. ...+.-.+.-||++++|| +||++....
T Consensus 101 s~E~~~~~~~~p~I~~~~~~G~~~~~~~vP~~~~~~~~~~~~~~~N~G~E~la~~~dG~~l~~~~E~~l~~d~~~~~~~~ 180 (326)
T PF13449_consen 101 SSEGGRTGGIPPRIRRFDLDGRVIRRFPVPAAFLPDANGTSGRRNNRGFEGLAVSPDGRTLFAAMESPLKQDGPRANPDN 180 (326)
T ss_pred EeCCccCCCCCCEEEEECCCCcccceEccccccccccCccccccCCCCeEEEEECCCCCEEEEEECccccCCCccccccc
Confidence 99999 99999999998754332121 10 00 112244577899999999 699887643
Q ss_pred ---CeEEEEeCCCCCCccceeEE--EEecC----CCCCCCCeEEEeCCCeEEEEe
Q 020019 222 ---GNLFKIDIVDGVGEGEEIKL--IRVAG----GPLSFGDGLELLSPTKLVVAG 267 (332)
Q Consensus 222 ---~~i~~id~~~~~~~~~~~~~--v~~~g----~~~~~pdGi~~~~dG~l~va~ 267 (332)
-+|++++..+.. ..... +.+.. .....+..|+.-++++|+|-+
T Consensus 181 ~~~~ri~~~d~~~~~---~~~~~~~y~ld~~~~~~~~~~isd~~al~d~~lLvLE 232 (326)
T PF13449_consen 181 GSPLRILRYDPKTPG---EPVAEYAYPLDPPPTAPGDNGISDIAALPDGRLLVLE 232 (326)
T ss_pred CceEEEEEecCCCCC---ccceEEEEeCCccccccCCCCceeEEEECCCcEEEEE
Confidence 467888887531 11222 23320 012456677788899999996
|
|
| >PRK02889 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=97.98 E-value=0.011 Score=57.22 Aligned_cols=138 Identities=17% Similarity=0.213 Sum_probs=80.5
Q ss_pred cceEEEeCCCCeEEEEEeCcCCCccceEEEEECCCCcEEEEEecCCCCCCCCCccceEECCCCc-EEEEeC--CCCeEEE
Q 020019 99 SLGLVLDHPRNRLLVVAADVFGNKYSAVAAYDLSTWNRLFLTQLSGPSDGKSCADDVTVDAEGN-AYVTDV--TGSKIWK 175 (332)
Q Consensus 99 ~~gi~vd~~~g~l~v~~~~~~~~~~~~l~~~d~~~g~~~~~~~l~~~~~~~~~~ndiavd~dG~-lyvtd~--~~~~I~~ 175 (332)
....++.|+..+|+++.... +...|+.+|+++|+......+. ......++.|||+ |+++-. +...||.
T Consensus 198 v~~p~wSPDG~~la~~s~~~---~~~~I~~~dl~~g~~~~l~~~~------g~~~~~~~SPDG~~la~~~~~~g~~~Iy~ 268 (427)
T PRK02889 198 IISPAWSPDGTKLAYVSFES---KKPVVYVHDLATGRRRVVANFK------GSNSAPAWSPDGRTLAVALSRDGNSQIYT 268 (427)
T ss_pred cccceEcCCCCEEEEEEccC---CCcEEEEEECCCCCEEEeecCC------CCccceEECCCCCEEEEEEccCCCceEEE
Confidence 45678888733455444221 2346999999988765443331 1223688999985 666533 3457999
Q ss_pred EcCCCceEEEecCCCCCCcccccCccccCeEEEccCc-eEEEEeC--CCCeEEEEeCCCCCCccceeEEEEecCCCCCCC
Q 020019 176 VGVKGEFLSIISSPLFTPKEWYKNLVGLNGIVYHPDG-FLIVIHT--FSGNLFKIDIVDGVGEGEEIKLIRVAGGPLSFG 252 (332)
Q Consensus 176 v~~~g~~~~~~~~~~~~~p~~~~~~~~~nGi~~~~dG-~Lyva~~--~~~~i~~id~~~~~~~~~~~~~v~~~g~~~~~p 252 (332)
++.+++....+.... ......+|+||| +|+++.. +..+||++++.++ ..+.+...+ ...
T Consensus 269 ~d~~~~~~~~lt~~~----------~~~~~~~wSpDG~~l~f~s~~~g~~~Iy~~~~~~g-----~~~~lt~~g---~~~ 330 (427)
T PRK02889 269 VNADGSGLRRLTQSS----------GIDTEPFFSPDGRSIYFTSDRGGAPQIYRMPASGG-----AAQRVTFTG---SYN 330 (427)
T ss_pred EECCCCCcEECCCCC----------CCCcCeEEcCCCCEEEEEecCCCCcEEEEEECCCC-----ceEEEecCC---CCc
Confidence 988755333221111 112356899999 7766543 2447899988765 333343332 112
Q ss_pred CeEEEeCCCeE
Q 020019 253 DGLELLSPTKL 263 (332)
Q Consensus 253 dGi~~~~dG~l 263 (332)
....+.+||+.
T Consensus 331 ~~~~~SpDG~~ 341 (427)
T PRK02889 331 TSPRISPDGKL 341 (427)
T ss_pred CceEECCCCCE
Confidence 24568888764
|
|
| >PRK00178 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=97.97 E-value=0.0049 Score=59.48 Aligned_cols=178 Identities=16% Similarity=0.200 Sum_probs=102.4
Q ss_pred cceEEcCCCCEE-EEEec--CCeEEEEECCCCCCCccceeeeEEecccCcCCCccceEEEeCCCCeEEEEEeCcCCCccc
Q 020019 48 ECAKWDDSGRRF-IVSFL--DGGIGQVAVPDDYPPGTVLEEVTLVKDLELTGNGSLGLVLDHPRNRLLVVAADVFGNKYS 124 (332)
Q Consensus 48 egia~d~~g~~~-~~~~~--~g~I~~vd~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~vd~~~g~l~v~~~~~~~~~~~ 124 (332)
..+.|+|||+.+ |++.. ...|++++..+++. + .+...++ ......+.|+..+|++..... +..
T Consensus 202 ~~p~wSpDG~~la~~s~~~~~~~l~~~~l~~g~~-----~--~l~~~~g----~~~~~~~SpDG~~la~~~~~~---g~~ 267 (430)
T PRK00178 202 LSPRWSPDGKRIAYVSFEQKRPRIFVQNLDTGRR-----E--QITNFEG----LNGAPAWSPDGSKLAFVLSKD---GNP 267 (430)
T ss_pred eeeeECCCCCEEEEEEcCCCCCEEEEEECCCCCE-----E--EccCCCC----CcCCeEECCCCCEEEEEEccC---CCc
Confidence 567899999854 55533 34799999887652 1 2221111 223578888733455443221 234
Q ss_pred eEEEEECCCCcEEEEEecCCCCCCCCCccceEECCCCc-EEEEeC--CCCeEEEEcCC-CceEEEecCCCCCCcccccCc
Q 020019 125 AVAAYDLSTWNRLFLTQLSGPSDGKSCADDVTVDAEGN-AYVTDV--TGSKIWKVGVK-GEFLSIISSPLFTPKEWYKNL 200 (332)
Q Consensus 125 ~l~~~d~~~g~~~~~~~l~~~~~~~~~~ndiavd~dG~-lyvtd~--~~~~I~~v~~~-g~~~~~~~~~~~~~p~~~~~~ 200 (332)
.|+++|.++++....... ........+.|||+ +|++.. +...||+++.+ |+..++....
T Consensus 268 ~Iy~~d~~~~~~~~lt~~------~~~~~~~~~spDg~~i~f~s~~~g~~~iy~~d~~~g~~~~lt~~~----------- 330 (430)
T PRK00178 268 EIYVMDLASRQLSRVTNH------PAIDTEPFWGKDGRTLYFTSDRGGKPQIYKVNVNGGRAERVTFVG----------- 330 (430)
T ss_pred eEEEEECCCCCeEEcccC------CCCcCCeEECCCCCEEEEEECCCCCceEEEEECCCCCEEEeecCC-----------
Confidence 799999998776432211 12234567899985 666533 34589999876 4443332111
Q ss_pred cccCeEEEccCc-eEEEEeCCCC--eEEEEeCCCCCCccceeEEEEecCCCCCCCCeEEEeCCCeEEE
Q 020019 201 VGLNGIVYHPDG-FLIVIHTFSG--NLFKIDIVDGVGEGEEIKLIRVAGGPLSFGDGLELLSPTKLVV 265 (332)
Q Consensus 201 ~~~nGi~~~~dG-~Lyva~~~~~--~i~~id~~~~~~~~~~~~~v~~~g~~~~~pdGi~~~~dG~l~v 265 (332)
.......++||| .|+++....+ .|+.+++.++ ..+.+... .. -....+.+||+.++
T Consensus 331 ~~~~~~~~Spdg~~i~~~~~~~~~~~l~~~dl~tg-----~~~~lt~~--~~--~~~p~~spdg~~i~ 389 (430)
T PRK00178 331 NYNARPRLSADGKTLVMVHRQDGNFHVAAQDLQRG-----SVRILTDT--SL--DESPSVAPNGTMLI 389 (430)
T ss_pred CCccceEECCCCCEEEEEEccCCceEEEEEECCCC-----CEEEccCC--CC--CCCceECCCCCEEE
Confidence 112246799999 8888765443 6889998876 23333221 11 12346888877443
|
|
| >PRK11138 outer membrane biogenesis protein BamB; Provisional | Back alignment and domain information |
|---|
Probab=97.97 E-value=0.007 Score=57.76 Aligned_cols=188 Identities=16% Similarity=0.196 Sum_probs=97.2
Q ss_pred CCEEEEEecCCeEEEEECCCCCCCccceeeeEEecccCcCCCccceEEEeCCCCeEEEEEeCcCCCccceEEEEECCCCc
Q 020019 56 GRRFIVSFLDGGIGQVAVPDDYPPGTVLEEVTLVKDLELTGNGSLGLVLDHPRNRLLVVAADVFGNKYSAVAAYDLSTWN 135 (332)
Q Consensus 56 g~~~~~~~~~g~I~~vd~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~vd~~~g~l~v~~~~~~~~~~~~l~~~d~~~g~ 135 (332)
+++|+.+ .++.|+.+|..+++. .|.... .+.......+.. +++|+... .+.|+.+|.++|+
T Consensus 121 ~~v~v~~-~~g~l~ald~~tG~~--------~W~~~~--~~~~~ssP~v~~--~~v~v~~~------~g~l~ald~~tG~ 181 (394)
T PRK11138 121 GKVYIGS-EKGQVYALNAEDGEV--------AWQTKV--AGEALSRPVVSD--GLVLVHTS------NGMLQALNESDGA 181 (394)
T ss_pred CEEEEEc-CCCEEEEEECCCCCC--------cccccC--CCceecCCEEEC--CEEEEECC------CCEEEEEEccCCC
Confidence 3444433 467899999887762 343211 111111223442 78888754 3579999999999
Q ss_pred EEEEEecCCCCCCCCCccceEECCCCcEEEEeCCCCeEEEEcCC-CceEEEecCCCCCCccccc--Cc--cccCeEEEcc
Q 020019 136 RLFLTQLSGPSDGKSCADDVTVDAEGNAYVTDVTGSKIWKVGVK-GEFLSIISSPLFTPKEWYK--NL--VGLNGIVYHP 210 (332)
Q Consensus 136 ~~~~~~l~~~~~~~~~~ndiavd~dG~lyvtd~~~~~I~~v~~~-g~~~~~~~~~~~~~p~~~~--~~--~~~nGi~~~~ 210 (332)
..+..+...|..........++. +|.+|+.. ..+.++.++.. |+.. +- ........... .. ....-+ + .
T Consensus 182 ~~W~~~~~~~~~~~~~~~sP~v~-~~~v~~~~-~~g~v~a~d~~~G~~~-W~-~~~~~~~~~~~~~~~~~~~~sP~-v-~ 255 (394)
T PRK11138 182 VKWTVNLDVPSLTLRGESAPATA-FGGAIVGG-DNGRVSAVLMEQGQLI-WQ-QRISQPTGATEIDRLVDVDTTPV-V-V 255 (394)
T ss_pred EeeeecCCCCcccccCCCCCEEE-CCEEEEEc-CCCEEEEEEccCChhh-he-eccccCCCccchhcccccCCCcE-E-E
Confidence 98877653221000011122333 34577754 46788888865 5532 21 11000000000 00 001111 2 2
Q ss_pred CceEEEEeCCCCeEEEEeCCCCCCccceeEEEEecCCCCCCCCeEEEeCCCeEEEEeCCc-eEEEEcCCC
Q 020019 211 DGFLIVIHTFSGNLFKIDIVDGVGEGEEIKLIRVAGGPLSFGDGLELLSPTKLVVAGNPS-ARLVESSDG 279 (332)
Q Consensus 211 dG~Lyva~~~~~~i~~id~~~~~~~~~~~~~v~~~g~~~~~pdGi~~~~dG~l~va~~~~-~~~v~~~dg 279 (332)
++.+|+... .+.++.+|+.+++ +. ... .+..+..++++ +|++|+.+... ...+...+|
T Consensus 256 ~~~vy~~~~-~g~l~ald~~tG~-----~~-W~~---~~~~~~~~~~~-~~~vy~~~~~g~l~ald~~tG 314 (394)
T PRK11138 256 GGVVYALAY-NGNLVALDLRSGQ-----IV-WKR---EYGSVNDFAVD-GGRIYLVDQNDRVYALDTRGG 314 (394)
T ss_pred CCEEEEEEc-CCeEEEEECCCCC-----EE-Eee---cCCCccCcEEE-CCEEEEEcCCCeEEEEECCCC
Confidence 568998775 5789999999872 22 111 12233344444 57899987543 344455666
|
|
| >PRK03629 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=97.96 E-value=0.018 Score=55.77 Aligned_cols=138 Identities=12% Similarity=0.139 Sum_probs=81.8
Q ss_pred cceEEEeCCCCeEEEEEeCcCCCccceEEEEECCCCcEEEEEecCCCCCCCCCccceEECCCCc-EEEEeCC--CCeEEE
Q 020019 99 SLGLVLDHPRNRLLVVAADVFGNKYSAVAAYDLSTWNRLFLTQLSGPSDGKSCADDVTVDAEGN-AYVTDVT--GSKIWK 175 (332)
Q Consensus 99 ~~gi~vd~~~g~l~v~~~~~~~~~~~~l~~~d~~~g~~~~~~~l~~~~~~~~~~ndiavd~dG~-lyvtd~~--~~~I~~ 175 (332)
....+++|+..+|.++.... +...++.+|+++|+......+. .....+++.|||+ |+++.+. ...||.
T Consensus 201 ~~~p~wSPDG~~la~~s~~~---g~~~i~i~dl~~G~~~~l~~~~------~~~~~~~~SPDG~~La~~~~~~g~~~I~~ 271 (429)
T PRK03629 201 LMSPAWSPDGSKLAYVTFES---GRSALVIQTLANGAVRQVASFP------RHNGAPAFSPDGSKLAFALSKTGSLNLYV 271 (429)
T ss_pred eeeeEEcCCCCEEEEEEecC---CCcEEEEEECCCCCeEEccCCC------CCcCCeEECCCCCEEEEEEcCCCCcEEEE
Confidence 45778899733344333211 2356889999888765444332 1233589999996 7766443 346999
Q ss_pred EcCCCc-eEEEecCCCCCCcccccCccccCeEEEccCc-eEEEEeCC--CCeEEEEeCCCCCCccceeEEEEecCCCCCC
Q 020019 176 VGVKGE-FLSIISSPLFTPKEWYKNLVGLNGIVYHPDG-FLIVIHTF--SGNLFKIDIVDGVGEGEEIKLIRVAGGPLSF 251 (332)
Q Consensus 176 v~~~g~-~~~~~~~~~~~~p~~~~~~~~~nGi~~~~dG-~Lyva~~~--~~~i~~id~~~~~~~~~~~~~v~~~g~~~~~ 251 (332)
++.++. ..++.... ......+|+||| .|+++... ..+||+++++++ ..+.+...+ ..
T Consensus 272 ~d~~tg~~~~lt~~~-----------~~~~~~~wSPDG~~I~f~s~~~g~~~Iy~~d~~~g-----~~~~lt~~~---~~ 332 (429)
T PRK03629 272 MDLASGQIRQVTDGR-----------SNNTEPTWFPDSQNLAYTSDQAGRPQVYKVNINGG-----APQRITWEG---SQ 332 (429)
T ss_pred EECCCCCEEEccCCC-----------CCcCceEECCCCCEEEEEeCCCCCceEEEEECCCC-----CeEEeecCC---CC
Confidence 998754 33322111 123567999999 67554332 347999999876 334443321 22
Q ss_pred CCeEEEeCCCeEE
Q 020019 252 GDGLELLSPTKLV 264 (332)
Q Consensus 252 pdGi~~~~dG~l~ 264 (332)
....++.+||+.+
T Consensus 333 ~~~~~~SpDG~~I 345 (429)
T PRK03629 333 NQDADVSSDGKFM 345 (429)
T ss_pred ccCEEECCCCCEE
Confidence 3456788887644
|
|
| >TIGR03032 conserved hypothetical protein TIGR03032 | Back alignment and domain information |
|---|
Probab=97.95 E-value=0.0022 Score=58.17 Aligned_cols=145 Identities=17% Similarity=0.182 Sum_probs=90.1
Q ss_pred cccceEEcCCCCEEEEEecCCeEEEEECCCCCCCcccee-eeEEecccCcCCC-ccceEEEeCCCCeEEEEEeCcC----
Q 020019 46 FRECAKWDDSGRRFIVSFLDGGIGQVAVPDDYPPGTVLE-EVTLVKDLELTGN-GSLGLVLDHPRNRLLVVAADVF---- 119 (332)
Q Consensus 46 ~pegia~d~~g~~~~~~~~~g~I~~vd~~~~~~~~~~~~-~~~~~~~~~~~~~-~~~gi~vd~~~g~l~v~~~~~~---- 119 (332)
-.+.+++ .++.+++++..-..|..+++.-.-. .. +..+++.-..... +.|||++... .--||+.-...
T Consensus 104 diHdia~-~~~~l~fVNT~fSCLatl~~~~SF~----P~WkPpFIs~la~eDRCHLNGlA~~~g-~p~yVTa~~~sD~~~ 177 (335)
T TIGR03032 104 DAHDLAL-GAGRLLFVNTLFSCLATVSPDYSFV----PLWKPPFISKLAPEDRCHLNGMALDDG-EPRYVTALSQSDVAD 177 (335)
T ss_pred chhheee-cCCcEEEEECcceeEEEECCCCccc----cccCCccccccCccCceeecceeeeCC-eEEEEEEeeccCCcc
Confidence 5577899 6678888885568899998753210 00 0012221000112 6799999863 33566543211
Q ss_pred C----CccceEEEEECCCCcEEEEEecCCCCCCCCCccceEECCCCcEEEEeCCCCeEEEEcCC-CceEEEecCCCCCCc
Q 020019 120 G----NKYSAVAAYDLSTWNRLFLTQLSGPSDGKSCADDVTVDAEGNAYVTDVTGSKIWKVGVK-GEFLSIISSPLFTPK 194 (332)
Q Consensus 120 ~----~~~~~l~~~d~~~g~~~~~~~l~~~~~~~~~~ndiavd~dG~lyvtd~~~~~I~~v~~~-g~~~~~~~~~~~~~p 194 (332)
+ ...+.+ ++|.++++... .+.++|...... +|+||+.|++.+.|.++|++ |+...+..-+.
T Consensus 178 gWR~~~~~gG~-vidv~s~evl~--------~GLsmPhSPRWh-dgrLwvldsgtGev~~vD~~~G~~e~Va~vpG---- 243 (335)
T TIGR03032 178 GWREGRRDGGC-VIDIPSGEVVA--------SGLSMPHSPRWY-QGKLWLLNSGRGELGYVDPQAGKFQPVAFLPG---- 243 (335)
T ss_pred cccccccCCeE-EEEeCCCCEEE--------cCccCCcCCcEe-CCeEEEEECCCCEEEEEcCCCCcEEEEEECCC----
Confidence 0 112233 36777776542 234677777776 57899999999999999997 88776654433
Q ss_pred ccccCccccCeEEEccCc-eEEEEeC
Q 020019 195 EWYKNLVGLNGIVYHPDG-FLIVIHT 219 (332)
Q Consensus 195 ~~~~~~~~~nGi~~~~dG-~Lyva~~ 219 (332)
.+.||+|. | .++|+-+
T Consensus 244 -------~~rGL~f~--G~llvVgmS 260 (335)
T TIGR03032 244 -------FTRGLAFA--GDFAFVGLS 260 (335)
T ss_pred -------CCccccee--CCEEEEEec
Confidence 46799998 6 7777654
|
This protein family is uncharacterized. A number of motifs are conserved perfectly among all member sequences. The function of this protein is unknown. |
| >PRK05137 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=97.94 E-value=0.0042 Score=60.18 Aligned_cols=141 Identities=12% Similarity=0.122 Sum_probs=82.2
Q ss_pred cceEEEeCCCCeEEEEEeCcCCCccceEEEEECCCCcEEEEEecCCCCCCCCCccceEECCCCc-EEEEeC--CCCeEEE
Q 020019 99 SLGLVLDHPRNRLLVVAADVFGNKYSAVAAYDLSTWNRLFLTQLSGPSDGKSCADDVTVDAEGN-AYVTDV--TGSKIWK 175 (332)
Q Consensus 99 ~~gi~vd~~~g~l~v~~~~~~~~~~~~l~~~d~~~g~~~~~~~l~~~~~~~~~~ndiavd~dG~-lyvtd~--~~~~I~~ 175 (332)
.....+.|+..+|+++.... +...|+++|+++|+........ ......++.|||+ |+++-. +...||.
T Consensus 204 v~~p~wSpDG~~lay~s~~~---g~~~i~~~dl~~g~~~~l~~~~------g~~~~~~~SPDG~~la~~~~~~g~~~Iy~ 274 (435)
T PRK05137 204 VLTPRFSPNRQEITYMSYAN---GRPRVYLLDLETGQRELVGNFP------GMTFAPRFSPDGRKVVMSLSQGGNTDIYT 274 (435)
T ss_pred eEeeEECCCCCEEEEEEecC---CCCEEEEEECCCCcEEEeecCC------CcccCcEECCCCCEEEEEEecCCCceEEE
Confidence 45677888733444443221 2357999999988765433331 1234678999996 665543 3457999
Q ss_pred EcCCCceEEEecCCCCCCcccccCccccCeEEEccCc-eEEEEeCC--CCeEEEEeCCCCCCccceeEEEEecCCCCCCC
Q 020019 176 VGVKGEFLSIISSPLFTPKEWYKNLVGLNGIVYHPDG-FLIVIHTF--SGNLFKIDIVDGVGEGEEIKLIRVAGGPLSFG 252 (332)
Q Consensus 176 v~~~g~~~~~~~~~~~~~p~~~~~~~~~nGi~~~~dG-~Lyva~~~--~~~i~~id~~~~~~~~~~~~~v~~~g~~~~~p 252 (332)
++.++...+.+.... ......+|+||| .|+++... ..+||+++++++ ..+.+...+ ...
T Consensus 275 ~d~~~~~~~~Lt~~~----------~~~~~~~~spDG~~i~f~s~~~g~~~Iy~~d~~g~-----~~~~lt~~~---~~~ 336 (435)
T PRK05137 275 MDLRSGTTTRLTDSP----------AIDTSPSYSPDGSQIVFESDRSGSPQLYVMNADGS-----NPRRISFGG---GRY 336 (435)
T ss_pred EECCCCceEEccCCC----------CccCceeEcCCCCEEEEEECCCCCCeEEEEECCCC-----CeEEeecCC---Ccc
Confidence 998755333221110 123457899999 67665433 347999998865 344443221 112
Q ss_pred CeEEEeCCCe-EEEE
Q 020019 253 DGLELLSPTK-LVVA 266 (332)
Q Consensus 253 dGi~~~~dG~-l~va 266 (332)
....+.+||+ |+++
T Consensus 337 ~~~~~SpdG~~ia~~ 351 (435)
T PRK05137 337 STPVWSPRGDLIAFT 351 (435)
T ss_pred cCeEECCCCCEEEEE
Confidence 3456788876 4444
|
|
| >PRK04922 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=97.93 E-value=0.014 Score=56.60 Aligned_cols=141 Identities=13% Similarity=0.200 Sum_probs=82.7
Q ss_pred cceEEEeCCCCeEEEEEeCcCCCccceEEEEECCCCcEEEEEecCCCCCCCCCccceEECCCCc-EEEEeC--CCCeEEE
Q 020019 99 SLGLVLDHPRNRLLVVAADVFGNKYSAVAAYDLSTWNRLFLTQLSGPSDGKSCADDVTVDAEGN-AYVTDV--TGSKIWK 175 (332)
Q Consensus 99 ~~gi~vd~~~g~l~v~~~~~~~~~~~~l~~~d~~~g~~~~~~~l~~~~~~~~~~ndiavd~dG~-lyvtd~--~~~~I~~ 175 (332)
....+++|+...|+++.... +...|+++|.++++......+. .....+++.|||+ ++++.+ +...||.
T Consensus 206 v~~p~wSpDg~~la~~s~~~---~~~~l~~~dl~~g~~~~l~~~~------g~~~~~~~SpDG~~l~~~~s~~g~~~Iy~ 276 (433)
T PRK04922 206 ILSPAWSPDGKKLAYVSFER---GRSAIYVQDLATGQRELVASFR------GINGAPSFSPDGRRLALTLSRDGNPEIYV 276 (433)
T ss_pred cccccCCCCCCEEEEEecCC---CCcEEEEEECCCCCEEEeccCC------CCccCceECCCCCEEEEEEeCCCCceEEE
Confidence 45677888744455554321 2356899999888765433331 1223578999996 766543 3457999
Q ss_pred EcCCCceEEEecCCCCCCcccccCccccCeEEEccCc-eEEEEeCC--CCeEEEEeCCCCCCccceeEEEEecCCCCCCC
Q 020019 176 VGVKGEFLSIISSPLFTPKEWYKNLVGLNGIVYHPDG-FLIVIHTF--SGNLFKIDIVDGVGEGEEIKLIRVAGGPLSFG 252 (332)
Q Consensus 176 v~~~g~~~~~~~~~~~~~p~~~~~~~~~nGi~~~~dG-~Lyva~~~--~~~i~~id~~~~~~~~~~~~~v~~~g~~~~~p 252 (332)
++.++...+.+... .......+|+||| .|+++... ..+||.+++.++ ..+.+...+ ...
T Consensus 277 ~d~~~g~~~~lt~~----------~~~~~~~~~spDG~~l~f~sd~~g~~~iy~~dl~~g-----~~~~lt~~g---~~~ 338 (433)
T PRK04922 277 MDLGSRQLTRLTNH----------FGIDTEPTWAPDGKSIYFTSDRGGRPQIYRVAASGG-----SAERLTFQG---NYN 338 (433)
T ss_pred EECCCCCeEECccC----------CCCccceEECCCCCEEEEEECCCCCceEEEEECCCC-----CeEEeecCC---CCc
Confidence 99875433222111 0112357899999 77766433 346999998866 344443332 122
Q ss_pred CeEEEeCCCe-EEEE
Q 020019 253 DGLELLSPTK-LVVA 266 (332)
Q Consensus 253 dGi~~~~dG~-l~va 266 (332)
...++.+||+ |+++
T Consensus 339 ~~~~~SpDG~~Ia~~ 353 (433)
T PRK04922 339 ARASVSPDGKKIAMV 353 (433)
T ss_pred cCEEECCCCCEEEEE
Confidence 3578888876 4444
|
|
| >KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.91 E-value=0.0017 Score=56.63 Aligned_cols=173 Identities=17% Similarity=0.121 Sum_probs=105.5
Q ss_pred CEEEEE-ecCCeEEEEECCCCCCCccceeeeEEecccCcCCCccceEEEeCCCCeEEEEEeCcCCCccceEEEEECCCCc
Q 020019 57 RRFIVS-FLDGGIGQVAVPDDYPPGTVLEEVTLVKDLELTGNGSLGLVLDHPRNRLLVVAADVFGNKYSAVAAYDLSTWN 135 (332)
Q Consensus 57 ~~~~~~-~~~g~I~~vd~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~vd~~~g~l~v~~~~~~~~~~~~l~~~d~~~g~ 135 (332)
..++++ ..+-+|.-+...+|... +++ +.++. .++.+.+.++ ++..++.. ...+..||++++.
T Consensus 10 ~viLvsA~YDhTIRfWqa~tG~C~------rTi-qh~ds---qVNrLeiTpd-k~~LAaa~------~qhvRlyD~~S~n 72 (311)
T KOG0315|consen 10 PVILVSAGYDHTIRFWQALTGICS------RTI-QHPDS---QVNRLEITPD-KKDLAAAG------NQHVRLYDLNSNN 72 (311)
T ss_pred ceEEEeccCcceeeeeehhcCeEE------EEE-ecCcc---ceeeEEEcCC-cchhhhcc------CCeeEEEEccCCC
Confidence 355555 67888998988888751 233 34543 6889999997 66454443 3468889999886
Q ss_pred EEEEEecCCCCCCCCCccceEECCCCcEEEEeCCCCeEEEEcCCCc-eEEEecCCCCCCcccccCccccCeEEEccCc-e
Q 020019 136 RLFLTQLSGPSDGKSCADDVTVDAEGNAYVTDVTGSKIWKVGVKGE-FLSIISSPLFTPKEWYKNLVGLNGIVYHPDG-F 213 (332)
Q Consensus 136 ~~~~~~l~~~~~~~~~~ndiavd~dG~lyvtd~~~~~I~~v~~~g~-~~~~~~~~~~~~p~~~~~~~~~nGi~~~~dG-~ 213 (332)
......+.++ ......+.+..+|+.-+|-+..|.+-..|.... ..+.+. +. ...|-|+++|+. .
T Consensus 73 p~Pv~t~e~h---~kNVtaVgF~~dgrWMyTgseDgt~kIWdlR~~~~qR~~~---~~--------spVn~vvlhpnQte 138 (311)
T KOG0315|consen 73 PNPVATFEGH---TKNVTAVGFQCDGRWMYTGSEDGTVKIWDLRSLSCQRNYQ---HN--------SPVNTVVLHPNQTE 138 (311)
T ss_pred CCceeEEecc---CCceEEEEEeecCeEEEecCCCceEEEEeccCcccchhcc---CC--------CCcceEEecCCcce
Confidence 5444444322 244556778888987777776676655554321 111111 11 235899999998 9
Q ss_pred EEEEeCCCCeEEEEeCCCCCCccceeEEEEecCCCCCCCCeEEEeCCCeEEEEe
Q 020019 214 LIVIHTFSGNLFKIDIVDGVGEGEEIKLIRVAGGPLSFGDGLELLSPTKLVVAG 267 (332)
Q Consensus 214 Lyva~~~~~~i~~id~~~~~~~~~~~~~v~~~g~~~~~pdGi~~~~dG~l~va~ 267 (332)
|++.+. ++.|+.+|+.... -.. ...+ +.......+++.+||...++.
T Consensus 139 Lis~dq-sg~irvWDl~~~~----c~~-~liP-e~~~~i~sl~v~~dgsml~a~ 185 (311)
T KOG0315|consen 139 LISGDQ-SGNIRVWDLGENS----CTH-ELIP-EDDTSIQSLTVMPDGSMLAAA 185 (311)
T ss_pred EEeecC-CCcEEEEEccCCc----ccc-ccCC-CCCcceeeEEEcCCCcEEEEe
Confidence 998875 6679889987541 111 1122 122333456666666666554
|
|
| >PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A | Back alignment and domain information |
|---|
Probab=97.90 E-value=0.014 Score=51.14 Aligned_cols=208 Identities=20% Similarity=0.191 Sum_probs=110.0
Q ss_pred CCeEEEEECCCCCCCccceeeeEEecccCcCCCccceEEEeCCCCeEEEEEeCcCCCccceEEEEECCCCcEEEEEecCC
Q 020019 65 DGGIGQVAVPDDYPPGTVLEEVTLVKDLELTGNGSLGLVLDHPRNRLLVVAADVFGNKYSAVAAYDLSTWNRLFLTQLSG 144 (332)
Q Consensus 65 ~g~I~~vd~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~vd~~~g~l~v~~~~~~~~~~~~l~~~d~~~g~~~~~~~l~~ 144 (332)
+|.|..+|+.+++. .|....+....++....+.. ++++|+++. .+.|+.||.++|+..+...++.
T Consensus 2 ~g~l~~~d~~tG~~--------~W~~~~~~~~~~~~~~~~~~-~~~v~~~~~------~~~l~~~d~~tG~~~W~~~~~~ 66 (238)
T PF13360_consen 2 DGTLSALDPRTGKE--------LWSYDLGPGIGGPVATAVPD-GGRVYVASG------DGNLYALDAKTGKVLWRFDLPG 66 (238)
T ss_dssp TSEEEEEETTTTEE--------EEEEECSSSCSSEEETEEEE-TTEEEEEET------TSEEEEEETTTSEEEEEEECSS
T ss_pred CCEEEEEECCCCCE--------EEEEECCCCCCCccceEEEe-CCEEEEEcC------CCEEEEEECCCCCEEEEeeccc
Confidence 57888999877762 34322110001222114433 389999964 4679999999999988887732
Q ss_pred CCCCCCCccceEECCCCcEEEEeCCCCeEEEEc-CCCceEEEecCCCCCCcccccCccccCeEEEccCceEEEEeCCCCe
Q 020019 145 PSDGKSCADDVTVDAEGNAYVTDVTGSKIWKVG-VKGEFLSIISSPLFTPKEWYKNLVGLNGIVYHPDGFLIVIHTFSGN 223 (332)
Q Consensus 145 ~~~~~~~~ndiavd~dG~lyvtd~~~~~I~~v~-~~g~~~~~~~~~~~~~p~~~~~~~~~nGi~~~~dG~Lyva~~~~~~ 223 (332)
+. ..+ ..+ .++.+|+... .+.|+.+| .+|+..-.......+ +. ......-..++ ++.+|+... ++.
T Consensus 67 ~~---~~~--~~~-~~~~v~v~~~-~~~l~~~d~~tG~~~W~~~~~~~~-~~---~~~~~~~~~~~-~~~~~~~~~-~g~ 133 (238)
T PF13360_consen 67 PI---SGA--PVV-DGGRVYVGTS-DGSLYALDAKTGKVLWSIYLTSSP-PA---GVRSSSSPAVD-GDRLYVGTS-SGK 133 (238)
T ss_dssp CG---GSG--EEE-ETTEEEEEET-TSEEEEEETTTSCEEEEEEE-SSC-TC---STB--SEEEEE-TTEEEEEET-CSE
T ss_pred cc---cce--eee-cccccccccc-eeeeEecccCCcceeeeecccccc-cc---ccccccCceEe-cCEEEEEec-cCc
Confidence 21 111 333 3457888873 45999999 568764331111100 00 01122334443 347887765 778
Q ss_pred EEEEeCCCCCCccceeEEEEecCCCCCC-------CCeEEEeCCCeEEEEeCCce-EEEEcCCCceEEEEEeeecCCCcc
Q 020019 224 LFKIDIVDGVGEGEEIKLIRVAGGPLSF-------GDGLELLSPTKLVVAGNPSA-RLVESSDGWETAAVVAKFSGPVHR 295 (332)
Q Consensus 224 i~~id~~~~~~~~~~~~~v~~~g~~~~~-------pdGi~~~~dG~l~va~~~~~-~~v~~~dg~~~~~~~~~~~~~~~~ 295 (332)
|+.+|+++|+ .+-........... ..+-.+-.+|.+|++..... ..+....| +.. .... ..
T Consensus 134 l~~~d~~tG~----~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~g~~~~~d~~tg-~~~-w~~~-----~~ 202 (238)
T PF13360_consen 134 LVALDPKTGK----LLWKYPVGEPRGSSPISSFSDINGSPVISDGRVYVSSGDGRVVAVDLATG-EKL-WSKP-----IS 202 (238)
T ss_dssp EEEEETTTTE----EEEEEESSTT-SS--EEEETTEEEEEECCTTEEEEECCTSSEEEEETTTT-EEE-EEEC-----SS
T ss_pred EEEEecCCCc----EEEEeecCCCCCCcceeeecccccceEEECCEEEEEcCCCeEEEEECCCC-CEE-EEec-----CC
Confidence 9999999882 33333332101011 11333334579999986542 33466666 321 2221 11
Q ss_pred cceE-EEEECCeEEEEE
Q 020019 296 LATA-ATVKDGRVYLNH 311 (332)
Q Consensus 296 ~pt~-va~~~g~lyv~~ 311 (332)
.+.. ....++.||+.+
T Consensus 203 ~~~~~~~~~~~~l~~~~ 219 (238)
T PF13360_consen 203 GIYSLPSVDGGTLYVTS 219 (238)
T ss_dssp -ECECEECCCTEEEEEE
T ss_pred CccCCceeeCCEEEEEe
Confidence 1222 333788888866
|
... |
| >KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=97.90 E-value=0.012 Score=52.28 Aligned_cols=232 Identities=12% Similarity=0.117 Sum_probs=137.3
Q ss_pred EecCCccccceEEcCCCCEEEEEecCCeEEEEECCCCCCCccceeeeEEecccCcCCCccceEEEeCCCCeEEEEEeCcC
Q 020019 40 YHSSSFFRECAKWDDSGRRFIVSFLDGGIGQVAVPDDYPPGTVLEEVTLVKDLELTGNGSLGLVLDHPRNRLLVVAADVF 119 (332)
Q Consensus 40 ~~~~~~~pegia~d~~g~~~~~~~~~g~I~~vd~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~vd~~~g~l~v~~~~~~ 119 (332)
+.+..-..++++..+||+..++..+++.+..+|..+++. .. .+..+ . .-+.+++++++ ++-.|...
T Consensus 59 ~~GHsH~v~dv~~s~dg~~alS~swD~~lrlWDl~~g~~----t~--~f~GH-~---~dVlsva~s~d-n~qivSGS--- 124 (315)
T KOG0279|consen 59 LTGHSHFVSDVVLSSDGNFALSASWDGTLRLWDLATGES----TR--RFVGH-T---KDVLSVAFSTD-NRQIVSGS--- 124 (315)
T ss_pred eeccceEecceEEccCCceEEeccccceEEEEEecCCcE----EE--EEEec-C---CceEEEEecCC-CceeecCC---
Confidence 344334667899999999888888899999999988763 12 34421 1 25789999997 66555532
Q ss_pred CCccceEEEEECCCCcEEEEEecCCCCCCCCCccceEECCCC-cEE-EEeCCCCeEEEEcCCCceEEEecCCCCCCcccc
Q 020019 120 GNKYSAVAAYDLSTWNRLFLTQLSGPSDGKSCADDVTVDAEG-NAY-VTDVTGSKIWKVGVKGEFLSIISSPLFTPKEWY 197 (332)
Q Consensus 120 ~~~~~~l~~~d~~~g~~~~~~~l~~~~~~~~~~ndiavd~dG-~ly-vtd~~~~~I~~v~~~g~~~~~~~~~~~~~p~~~ 197 (332)
+...|..|+...+......+- .+..-.+.+.+.|+. +.| ++.+-...|-..|.++-.... .+.
T Consensus 125 --rDkTiklwnt~g~ck~t~~~~----~~~~WVscvrfsP~~~~p~Ivs~s~DktvKvWnl~~~~l~~----~~~----- 189 (315)
T KOG0279|consen 125 --RDKTIKLWNTLGVCKYTIHED----SHREWVSCVRFSPNESNPIIVSASWDKTVKVWNLRNCQLRT----TFI----- 189 (315)
T ss_pred --CcceeeeeeecccEEEEEecC----CCcCcEEEEEEcCCCCCcEEEEccCCceEEEEccCCcchhh----ccc-----
Confidence 345677888875443322211 113456778999984 544 444445555555655432110 111
Q ss_pred cCccccCeEEEccCceEEEEeCCCCeEEEEeCCCCCCccceeEEEEecCCCCCCCCeEEEeCCCeEEEEe--CCceEEEE
Q 020019 198 KNLVGLNGIVYHPDGFLIVIHTFSGNLFKIDIVDGVGEGEEIKLIRVAGGPLSFGDGLELLSPTKLVVAG--NPSARLVE 275 (332)
Q Consensus 198 ~~~~~~nGi~~~~dG~Lyva~~~~~~i~~id~~~~~~~~~~~~~v~~~g~~~~~pdGi~~~~dG~l~va~--~~~~~~v~ 275 (332)
......|-++++|||.|-.+-...++++-+|+..++ .... ++ .......++|.|+ +.|.+- ..++.+-.
T Consensus 190 gh~~~v~t~~vSpDGslcasGgkdg~~~LwdL~~~k----~lys--l~--a~~~v~sl~fspn-rywL~~at~~sIkIwd 260 (315)
T KOG0279|consen 190 GHSGYVNTVTVSPDGSLCASGGKDGEAMLWDLNEGK----NLYS--LE--AFDIVNSLCFSPN-RYWLCAATATSIKIWD 260 (315)
T ss_pred cccccEEEEEECCCCCEEecCCCCceEEEEEccCCc----eeEe--cc--CCCeEeeEEecCC-ceeEeeccCCceEEEe
Confidence 023457889999999998887888999999998652 3322 22 2344567899885 666664 33444334
Q ss_pred cCCCceEEEEEeeecCC--CcccceE--EEE--ECCeEEE
Q 020019 276 SSDGWETAAVVAKFSGP--VHRLATA--ATV--KDGRVYL 309 (332)
Q Consensus 276 ~~dg~~~~~~~~~~~~~--~~~~pt~--va~--~~g~lyv 309 (332)
...+....++.-.+.++ ....|-| +++ ++.+||-
T Consensus 261 l~~~~~v~~l~~d~~g~s~~~~~~~clslaws~dG~tLf~ 300 (315)
T KOG0279|consen 261 LESKAVVEELKLDGIGPSSKAGDPICLSLAWSADGQTLFA 300 (315)
T ss_pred ccchhhhhhccccccccccccCCcEEEEEEEcCCCcEEEe
Confidence 44442222222222222 1223433 566 4667774
|
|
| >KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=97.88 E-value=0.0095 Score=59.29 Aligned_cols=195 Identities=14% Similarity=0.151 Sum_probs=124.2
Q ss_pred cceEEcCCCCEEEEE-ecCCeEEEEECCCCCCCccceeeeEEecccCcCCCccceEEEeCCCCeEEEEEeCcCCCccceE
Q 020019 48 ECAKWDDSGRRFIVS-FLDGGIGQVAVPDDYPPGTVLEEVTLVKDLELTGNGSLGLVLDHPRNRLLVVAADVFGNKYSAV 126 (332)
Q Consensus 48 egia~d~~g~~~~~~-~~~g~I~~vd~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~vd~~~g~l~v~~~~~~~~~~~~l 126 (332)
..+++...|+++-.. ..-|+|.++.-....+ .+-+..-+ .....+++.|| |.+.++..+ .+++
T Consensus 311 ~t~~~N~tGDWiA~g~~klgQLlVweWqsEsY--------VlKQQgH~--~~i~~l~YSpD-gq~iaTG~e-----DgKV 374 (893)
T KOG0291|consen 311 LTVSFNSTGDWIAFGCSKLGQLLVWEWQSESY--------VLKQQGHS--DRITSLAYSPD-GQLIATGAE-----DGKV 374 (893)
T ss_pred eEEEecccCCEEEEcCCccceEEEEEeeccce--------eeeccccc--cceeeEEECCC-CcEEEeccC-----CCcE
Confidence 346677777755433 5557777776554433 11111011 14578999997 887776553 5789
Q ss_pred EEEECCCCcEEEEEecCCCCCCCCCccceEECCCCcEEEEeCCCCeEEEEcCC-CceEEEecCCCCCCcccccCccccCe
Q 020019 127 AAYDLSTWNRLFLTQLSGPSDGKSCADDVTVDAEGNAYVTDVTGSKIWKVGVK-GEFLSIISSPLFTPKEWYKNLVGLNG 205 (332)
Q Consensus 127 ~~~d~~~g~~~~~~~l~~~~~~~~~~ndiavd~dG~lyvtd~~~~~I~~v~~~-g~~~~~~~~~~~~~p~~~~~~~~~nG 205 (332)
.+||..+|-= .+.+.. ..+...++.+..+|+..++.+..|.|..+|.. .+-.+ +|..| .......
T Consensus 375 KvWn~~SgfC--~vTFte---Hts~Vt~v~f~~~g~~llssSLDGtVRAwDlkRYrNfR-----Tft~P----~p~Qfsc 440 (893)
T KOG0291|consen 375 KVWNTQSGFC--FVTFTE---HTSGVTAVQFTARGNVLLSSSLDGTVRAWDLKRYRNFR-----TFTSP----EPIQFSC 440 (893)
T ss_pred EEEeccCceE--EEEecc---CCCceEEEEEEecCCEEEEeecCCeEEeeeecccceee-----eecCC----CceeeeE
Confidence 9999887632 233421 23566789999999999999999999999876 23222 33333 2345678
Q ss_pred EEEccCc-eEEEEeCCCCeEEEEeCCCCCCccceeEEEEecCCCCCCCCeEEEeCCCeEEEEe-CC---ceEEEEcCCC
Q 020019 206 IVYHPDG-FLIVIHTFSGNLFKIDIVDGVGEGEEIKLIRVAGGPLSFGDGLELLSPTKLVVAG-NP---SARLVESSDG 279 (332)
Q Consensus 206 i~~~~dG-~Lyva~~~~~~i~~id~~~~~~~~~~~~~v~~~g~~~~~pdGi~~~~dG~l~va~-~~---~~~~v~~~dg 279 (332)
++.||.| -+.....+.-.|+.++.++|+ ....+ .| +-+-..++.++++|.+.++. +. ..|-++...+
T Consensus 441 vavD~sGelV~AG~~d~F~IfvWS~qTGq----llDiL--sG-HEgPVs~l~f~~~~~~LaS~SWDkTVRiW~if~s~~ 512 (893)
T KOG0291|consen 441 VAVDPSGELVCAGAQDSFEIFVWSVQTGQ----LLDIL--SG-HEGPVSGLSFSPDGSLLASGSWDKTVRIWDIFSSSG 512 (893)
T ss_pred EEEcCCCCEEEeeccceEEEEEEEeecCe----eeehh--cC-CCCcceeeEEccccCeEEeccccceEEEEEeeccCc
Confidence 9999999 555555566689999999983 23322 22 22335689999999988885 32 2344454444
|
|
| >COG2133 Glucose/sorbosone dehydrogenases [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.88 E-value=0.00044 Score=65.23 Aligned_cols=170 Identities=9% Similarity=0.147 Sum_probs=99.1
Q ss_pred cccceEEcCCCCEEEEE-ec------------CCeEEEEECCCCCCCccceeeeEEecccC-------cCCCccceEEEe
Q 020019 46 FRECAKWDDSGRRFIVS-FL------------DGGIGQVAVPDDYPPGTVLEEVTLVKDLE-------LTGNGSLGLVLD 105 (332)
Q Consensus 46 ~pegia~d~~g~~~~~~-~~------------~g~I~~vd~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~gi~vd 105 (332)
+-..|++++||.+|++. .. .|+|.+++..+.- . . ..|. ...++|+|++++
T Consensus 178 ~g~~l~f~pDG~Lyvs~G~~~~~~~aq~~~~~~Gk~~r~~~a~~~------~---~-d~p~~~~~i~s~G~RN~qGl~w~ 247 (399)
T COG2133 178 FGGRLVFGPDGKLYVTTGSNGDPALAQDNVSLAGKVLRIDRAGII------P---A-DNPFPNSEIWSYGHRNPQGLAWH 247 (399)
T ss_pred CcccEEECCCCcEEEEeCCCCCcccccCccccccceeeeccCccc------c---c-CCCCCCcceEEeccCCccceeec
Confidence 34569999999888764 22 2567777654321 0 0 0111 112579999999
Q ss_pred CCCCeEEEEEeCc---C-C-----CccceEEEEECCC-C-----cEE----EEEecCCCC---CCCCCccceEECCC---
Q 020019 106 HPRNRLLVVAADV---F-G-----NKYSAVAAYDLST-W-----NRL----FLTQLSGPS---DGKSCADDVTVDAE--- 160 (332)
Q Consensus 106 ~~~g~l~v~~~~~---~-~-----~~~~~l~~~d~~~-g-----~~~----~~~~l~~~~---~~~~~~ndiavd~d--- 160 (332)
|.+|.||+++++. - + .+.++-+.|-... | ... ....+..|. ....-|.+|++-..
T Consensus 248 P~tg~Lw~~e~g~d~~~~~Deln~i~~G~nYGWP~~~~G~~~~g~~~~~~~~~~~~~~p~~~~~~h~ApsGmaFy~G~~f 327 (399)
T COG2133 248 PVTGALWTTEHGPDALRGPDELNSIRPGKNYGWPYAYFGQNYDGRAIPDGTVVAGAIQPVYTWAPHIAPSGMAFYTGDLF 327 (399)
T ss_pred CCCCcEEEEecCCCcccCcccccccccCCccCCceeccCcccCccccCCCcccccccCCceeeccccccceeEEecCCcC
Confidence 9889999999764 1 1 1222333332222 1 100 000111010 01245677888742
Q ss_pred ----CcEEEEeCCCCeEEEEcCCCceEEEecCCCCCCcccccCccccCeEEEccCceEEEEeCC-CCeEEEEeCC
Q 020019 161 ----GNAYVTDVTGSKIWKVGVKGEFLSIISSPLFTPKEWYKNLVGLNGIVYHPDGFLIVIHTF-SGNLFKIDIV 230 (332)
Q Consensus 161 ----G~lyvtd~~~~~I~~v~~~g~~~~~~~~~~~~~p~~~~~~~~~nGi~~~~dG~Lyva~~~-~~~i~~id~~ 230 (332)
|.++|+.-....+.+.+++|....+... .+.. .....+-+++..+||.||+++-. +++|||+...
T Consensus 328 P~~r~~lfV~~hgsw~~~~~~~~g~~~~~~~~-fl~~----d~~gR~~dV~v~~DGallv~~D~~~g~i~Rv~~~ 397 (399)
T COG2133 328 PAYRGDLFVGAHGSWPVLRLRPDGNYKVVLTG-FLSG----DLGGRPRDVAVAPDGALLVLTDQGDGRILRVSYA 397 (399)
T ss_pred ccccCcEEEEeecceeEEEeccCCCcceEEEE-EEec----CCCCcccceEECCCCeEEEeecCCCCeEEEecCC
Confidence 5788888777778889998874433211 0000 01135789999999988888877 6799999765
|
|
| >KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=97.87 E-value=0.02 Score=54.93 Aligned_cols=182 Identities=14% Similarity=0.100 Sum_probs=111.9
Q ss_pred cccceEEcCCCCEEEEEecCCeEEEEECCCCCCCccceeeeEEecccCcCCCccceEEEeCCCCeEEEEEeCcCCCccce
Q 020019 46 FRECAKWDDSGRRFIVSFLDGGIGQVAVPDDYPPGTVLEEVTLVKDLELTGNGSLGLVLDHPRNRLLVVAADVFGNKYSA 125 (332)
Q Consensus 46 ~pegia~d~~g~~~~~~~~~g~I~~vd~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~vd~~~g~l~v~~~~~~~~~~~~ 125 (332)
.-..+++.+++..+|+...+|.|..|+...+.. . .+. +..-.+...+|+.+.. +.++.+..| ..
T Consensus 322 ~ITaLtv~~d~~~i~SgsyDG~I~~W~~~~g~~-----~--~~~--g~~h~nqI~~~~~~~~-~~~~t~g~D------d~ 385 (603)
T KOG0318|consen 322 SITALTVSPDGKTIYSGSYDGHINSWDSGSGTS-----D--RLA--GKGHTNQIKGMAASES-GELFTIGWD------DT 385 (603)
T ss_pred ceeEEEEcCCCCEEEeeccCceEEEEecCCccc-----c--ccc--cccccceEEEEeecCC-CcEEEEecC------Ce
Confidence 335688999999888888899999999877653 1 121 1111135778998875 888888775 34
Q ss_pred EEEEECCCCcEEEE--EecCCCCCCCCCccceEECCCCc-EEEEeCCCCeEEEEcCCCceEEEecCCCCCCcccccCccc
Q 020019 126 VAAYDLSTWNRLFL--TQLSGPSDGKSCADDVTVDAEGN-AYVTDVTGSKIWKVGVKGEFLSIISSPLFTPKEWYKNLVG 202 (332)
Q Consensus 126 l~~~d~~~g~~~~~--~~l~~~~~~~~~~ndiavd~dG~-lyvtd~~~~~I~~v~~~g~~~~~~~~~~~~~p~~~~~~~~ 202 (332)
|.+++.+.+..... +.+ ...|-++++.++|. +.++... .|..+...++.... . -...
T Consensus 386 l~~~~~~~~~~t~~~~~~l------g~QP~~lav~~d~~~avv~~~~--~iv~l~~~~~~~~~--~----------~~y~ 445 (603)
T KOG0318|consen 386 LRVISLKDNGYTKSEVVKL------GSQPKGLAVLSDGGTAVVACIS--DIVLLQDQTKVSSI--P----------IGYE 445 (603)
T ss_pred EEEEecccCcccccceeec------CCCceeEEEcCCCCEEEEEecC--cEEEEecCCcceee--c----------cccc
Confidence 67777654332211 333 24466899999975 4444432 22233222222211 1 1234
Q ss_pred cCeEEEccCc-eEEEEeCCCCeEEEEeCCCCCCccceeEEEEecCCCCCCCCeEEEeCCCeEEEEeCC
Q 020019 203 LNGIVYHPDG-FLIVIHTFSGNLFKIDIVDGVGEGEEIKLIRVAGGPLSFGDGLELLSPTKLVVAGNP 269 (332)
Q Consensus 203 ~nGi~~~~dG-~Lyva~~~~~~i~~id~~~~~~~~~~~~~v~~~g~~~~~pdGi~~~~dG~l~va~~~ 269 (332)
+.+++++||+ .+-|. ...++|+.+.+.+... .++.... .....+..+++.|||..+++...
T Consensus 446 ~s~vAv~~~~~~vaVG-G~Dgkvhvysl~g~~l----~ee~~~~-~h~a~iT~vaySpd~~yla~~Da 507 (603)
T KOG0318|consen 446 SSAVAVSPDGSEVAVG-GQDGKVHVYSLSGDEL----KEEAKLL-EHRAAITDVAYSPDGAYLAAGDA 507 (603)
T ss_pred cceEEEcCCCCEEEEe-cccceEEEEEecCCcc----cceeeee-cccCCceEEEECCCCcEEEEecc
Confidence 6699999999 55555 4566688787776522 2221211 13356788999999998888643
|
|
| >PF01436 NHL: NHL repeat; InterPro: IPR001258 The NHL repeat, named after NCL-1, HT2A and Lin-41, is found largely in a large number of eukaryotic and prokaryotic proteins | Back alignment and domain information |
|---|
Probab=97.83 E-value=2.6e-05 Score=44.71 Aligned_cols=27 Identities=30% Similarity=0.529 Sum_probs=24.6
Q ss_pred CCccceEECCCCcEEEEeCCCCeEEEE
Q 020019 150 SCADDVTVDAEGNAYVTDVTGSKIWKV 176 (332)
Q Consensus 150 ~~~ndiavd~dG~lyvtd~~~~~I~~v 176 (332)
..|+|++++++|++||+|+.+++|.++
T Consensus 2 ~~P~gvav~~~g~i~VaD~~n~rV~vf 28 (28)
T PF01436_consen 2 NYPHGVAVDSDGNIYVADSGNHRVQVF 28 (28)
T ss_dssp SSEEEEEEETTSEEEEEECCCTEEEEE
T ss_pred cCCcEEEEeCCCCEEEEECCCCEEEEC
Confidence 368999999999999999999999875
|
For example, the repeat is found in a variety of enzymes of the copper type II, ascorbate-dependent monooxygenase family which catalyse the C terminus alpha-amidation of biological peptides []. In many it occurs in tandem arrays, for example in the ringfinger beta-box, coiled-coil (RBCC) eukaryotic growth regulators []. The 'Brain Tumor' protein (Brat) is one such growth regulator that contains a 6-bladed NHL-repeat beta-propeller [, ]. The NHL repeats are also found in serine/threonine protein kinase (STPK) in diverse range of pathogenic bacteria. These STPK are transmembrane receptors with a intracellular N-terminal kinase domain and extracellular C-terminal sensor domain. In the STPK, PknD, from Mycobacterium tuberculosis, the sensor domain forms a rigid, six-bladed b-propeller composed of NHL repeats with a flexible tether to the transmembrane domain.; GO: 0005515 protein binding; PDB: 3FVZ_A 3FW0_A 1RWL_A 1RWI_A 1Q7F_A. |
| >PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A | Back alignment and domain information |
|---|
Probab=97.82 E-value=0.019 Score=50.26 Aligned_cols=198 Identities=21% Similarity=0.201 Sum_probs=105.8
Q ss_pred EEcCCCCEEEEEecCCeEEEEECCCCCCCccceeeeEEecccCcCCCccceEEEeCCCCeEEEEEeCcCCCccceEEEEE
Q 020019 51 KWDDSGRRFIVSFLDGGIGQVAVPDDYPPGTVLEEVTLVKDLELTGNGSLGLVLDHPRNRLLVVAADVFGNKYSAVAAYD 130 (332)
Q Consensus 51 a~d~~g~~~~~~~~~g~I~~vd~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~vd~~~g~l~v~~~~~~~~~~~~l~~~d 130 (332)
++..++.+|+. ..++.|+.+|..+++. .|..........+ ..++. +++|+...+ +.++.+|
T Consensus 32 ~~~~~~~v~~~-~~~~~l~~~d~~tG~~--------~W~~~~~~~~~~~--~~~~~--~~v~v~~~~------~~l~~~d 92 (238)
T PF13360_consen 32 AVPDGGRVYVA-SGDGNLYALDAKTGKV--------LWRFDLPGPISGA--PVVDG--GRVYVGTSD------GSLYALD 92 (238)
T ss_dssp EEEETTEEEEE-ETTSEEEEEETTTSEE--------EEEEECSSCGGSG--EEEET--TEEEEEETT------SEEEEEE
T ss_pred EEEeCCEEEEE-cCCCEEEEEECCCCCE--------EEEeeccccccce--eeecc--cccccccce------eeeEecc
Confidence 45455555555 4679999999887862 2332211110111 34443 789988753 4799999
Q ss_pred CCCCcEEEEE-ecCCCCCCCCCccceEECCCCcEEEEeCCCCeEEEEcCC-CceEEEecCCCCCCcccccCccccCeEEE
Q 020019 131 LSTWNRLFLT-QLSGPSDGKSCADDVTVDAEGNAYVTDVTGSKIWKVGVK-GEFLSIISSPLFTPKEWYKNLVGLNGIVY 208 (332)
Q Consensus 131 ~~~g~~~~~~-~l~~~~~~~~~~ndiavd~dG~lyvtd~~~~~I~~v~~~-g~~~~~~~~~~~~~p~~~~~~~~~nGi~~ 208 (332)
.++|++.+.. ....+......+...+++ ++.+|+... .+.|+.+|++ |+......................++-.+
T Consensus 93 ~~tG~~~W~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~-~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~~~~~ 170 (238)
T PF13360_consen 93 AKTGKVLWSIYLTSSPPAGVRSSSSPAVD-GDRLYVGTS-SGKLVALDPKTGKLLWKYPVGEPRGSSPISSFSDINGSPV 170 (238)
T ss_dssp TTTSCEEEEEEE-SSCTCSTB--SEEEEE-TTEEEEEET-CSEEEEEETTTTEEEEEEESSTT-SS--EEEETTEEEEEE
T ss_pred cCCcceeeeeccccccccccccccCceEe-cCEEEEEec-cCcEEEEecCCCcEEEEeecCCCCCCcceeeecccccceE
Confidence 9999998874 332121111233345555 334666665 7999999966 76543221111000000000011123333
Q ss_pred ccCceEEEEeCCCCeEEEEeCCCCCCccceeEEEEecCCCCCCCCeEEEeCCCeEEEEeC-CceEEEEcCCC
Q 020019 209 HPDGFLIVIHTFSGNLFKIDIVDGVGEGEEIKLIRVAGGPLSFGDGLELLSPTKLVVAGN-PSARLVESSDG 279 (332)
Q Consensus 209 ~~dG~Lyva~~~~~~i~~id~~~~~~~~~~~~~v~~~g~~~~~pdGi~~~~dG~l~va~~-~~~~~v~~~dg 279 (332)
-.++.+|++.... +++.+|..++ ... ... ....+.+.....++.||+.+. .....+...+|
T Consensus 171 ~~~~~v~~~~~~g-~~~~~d~~tg-----~~~-w~~---~~~~~~~~~~~~~~~l~~~~~~~~l~~~d~~tG 232 (238)
T PF13360_consen 171 ISDGRVYVSSGDG-RVVAVDLATG-----EKL-WSK---PISGIYSLPSVDGGTLYVTSSDGRLYALDLKTG 232 (238)
T ss_dssp CCTTEEEEECCTS-SEEEEETTTT-----EEE-EEE---CSS-ECECEECCCTEEEEEETTTEEEEEETTTT
T ss_pred EECCEEEEEcCCC-eEEEEECCCC-----CEE-EEe---cCCCccCCceeeCCEEEEEeCCCEEEEEECCCC
Confidence 3356999987655 4778898887 322 222 123344534556788999983 33444566666
|
... |
| >TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL | Back alignment and domain information |
|---|
Probab=97.82 E-value=0.03 Score=52.97 Aligned_cols=143 Identities=17% Similarity=0.181 Sum_probs=69.6
Q ss_pred cceEEEEECCCCcEEEEEecCCCCCCCCCccceEECCCCcEEEEeCCCCeEEEEcCC-CceEEEecCCCCCCcccccCcc
Q 020019 123 YSAVAAYDLSTWNRLFLTQLSGPSDGKSCADDVTVDAEGNAYVTDVTGSKIWKVGVK-GEFLSIISSPLFTPKEWYKNLV 201 (332)
Q Consensus 123 ~~~l~~~d~~~g~~~~~~~l~~~~~~~~~~ndiavd~dG~lyvtd~~~~~I~~v~~~-g~~~~~~~~~~~~~p~~~~~~~ 201 (332)
.+.|+.+|.++|+..+......+..........++. ++.+|+.. ..+.++.+|+. |+....................
T Consensus 154 ~g~l~a~d~~tG~~~W~~~~~~~~~~~~~~~sp~~~-~~~v~~~~-~~g~v~ald~~tG~~~W~~~~~~~~g~~~~~~~~ 231 (377)
T TIGR03300 154 DGRLTALDAATGERLWTYSRVTPALTLRGSASPVIA-DGGVLVGF-AGGKLVALDLQTGQPLWEQRVALPKGRTELERLV 231 (377)
T ss_pred CCeEEEEEcCCCceeeEEccCCCceeecCCCCCEEE-CCEEEEEC-CCCEEEEEEccCCCEeeeeccccCCCCCchhhhh
Confidence 356888999999887766553221000001112232 25566654 45789999974 6543211100000000000000
Q ss_pred cc-CeEEEccCceEEEEeCCCCeEEEEeCCCCCCccceeEEEEecCCCCCCCCeEEEeCCCeEEEEeCCc-eEEEEcCCC
Q 020019 202 GL-NGIVYHPDGFLIVIHTFSGNLFKIDIVDGVGEGEEIKLIRVAGGPLSFGDGLELLSPTKLVVAGNPS-ARLVESSDG 279 (332)
Q Consensus 202 ~~-nGi~~~~dG~Lyva~~~~~~i~~id~~~~~~~~~~~~~v~~~g~~~~~pdGi~~~~dG~l~va~~~~-~~~v~~~dg 279 (332)
.. ....+ .++.+|++.. .+.++.+++++++ .+-.... ......+++ ++++|+..... ...+...+|
T Consensus 232 ~~~~~p~~-~~~~vy~~~~-~g~l~a~d~~tG~----~~W~~~~-----~~~~~p~~~-~~~vyv~~~~G~l~~~d~~tG 299 (377)
T TIGR03300 232 DVDGDPVV-DGGQVYAVSY-QGRVAALDLRSGR----VLWKRDA-----SSYQGPAVD-DNRLYVTDADGVVVALDRRSG 299 (377)
T ss_pred ccCCccEE-ECCEEEEEEc-CCEEEEEECCCCc----EEEeecc-----CCccCceEe-CCEEEEECCCCeEEEEECCCC
Confidence 00 01122 2568998775 5689999998772 2221221 122234443 57899887443 343455566
|
Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ. |
| >TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB | Back alignment and domain information |
|---|
Probab=97.81 E-value=0.035 Score=53.12 Aligned_cols=163 Identities=14% Similarity=0.181 Sum_probs=91.3
Q ss_pred CeEEEEECCCCCCCccceeeeEEecccCcCCCccceEEEeCCCCeEEEEEeCcCCCccceEEEEECCCCcEEEEEecCCC
Q 020019 66 GGIGQVAVPDDYPPGTVLEEVTLVKDLELTGNGSLGLVLDHPRNRLLVVAADVFGNKYSAVAAYDLSTWNRLFLTQLSGP 145 (332)
Q Consensus 66 g~I~~vd~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~vd~~~g~l~v~~~~~~~~~~~~l~~~d~~~g~~~~~~~l~~~ 145 (332)
..|+.+|.++... . .+. .+. .......++++..+|+++.... +...|++||.++++......+.
T Consensus 170 ~~l~~~d~~g~~~-----~--~l~-~~~---~~~~~p~~Spdg~~la~~~~~~---~~~~i~v~d~~~g~~~~~~~~~-- 233 (417)
T TIGR02800 170 YELQVADYDGANP-----Q--TIT-RSR---EPILSPAWSPDGQKLAYVSFES---GKPEIYVQDLATGQREKVASFP-- 233 (417)
T ss_pred ceEEEEcCCCCCC-----E--Eee-cCC---CceecccCCCCCCEEEEEEcCC---CCcEEEEEECCCCCEEEeecCC--
Confidence 3588887764431 1 233 221 1244567888734454443321 2356899999988765433331
Q ss_pred CCCCCCccceEECCCCc-EEEEeCC--CCeEEEEcCCCceEEEecCCCCCCcccccCccccCeEEEccCc-eEEEEeCC-
Q 020019 146 SDGKSCADDVTVDAEGN-AYVTDVT--GSKIWKVGVKGEFLSIISSPLFTPKEWYKNLVGLNGIVYHPDG-FLIVIHTF- 220 (332)
Q Consensus 146 ~~~~~~~ndiavd~dG~-lyvtd~~--~~~I~~v~~~g~~~~~~~~~~~~~p~~~~~~~~~nGi~~~~dG-~Lyva~~~- 220 (332)
.....+++.|||+ ++++... ...||.++.+++....+.... .......|++|| +|+++...
T Consensus 234 ----~~~~~~~~spDg~~l~~~~~~~~~~~i~~~d~~~~~~~~l~~~~----------~~~~~~~~s~dg~~l~~~s~~~ 299 (417)
T TIGR02800 234 ----GMNGAPAFSPDGSKLAVSLSKDGNPDIYVMDLDGKQLTRLTNGP----------GIDTEPSWSPDGKSIAFTSDRG 299 (417)
T ss_pred ----CCccceEECCCCCEEEEEECCCCCccEEEEECCCCCEEECCCCC----------CCCCCEEECCCCCEEEEEECCC
Confidence 2233478999985 7776543 457999998754332221110 012245789999 77655432
Q ss_pred -CCeEEEEeCCCCCCccceeEEEEecCCCCCCCCeEEEeCCCeEEEE
Q 020019 221 -SGNLFKIDIVDGVGEGEEIKLIRVAGGPLSFGDGLELLSPTKLVVA 266 (332)
Q Consensus 221 -~~~i~~id~~~~~~~~~~~~~v~~~g~~~~~pdGi~~~~dG~l~va 266 (332)
..+||.+++.++ ..+.+...+ ......++.++|+.++.
T Consensus 300 g~~~iy~~d~~~~-----~~~~l~~~~---~~~~~~~~spdg~~i~~ 338 (417)
T TIGR02800 300 GSPQIYMMDADGG-----EVRRLTFRG---GYNASPSWSPDGDLIAF 338 (417)
T ss_pred CCceEEEEECCCC-----CEEEeecCC---CCccCeEECCCCCEEEE
Confidence 347999998866 333343321 23345678888764444
|
The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear. |
| >PRK01029 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=97.80 E-value=0.026 Score=54.62 Aligned_cols=181 Identities=12% Similarity=0.135 Sum_probs=96.3
Q ss_pred ceEEcCCCC---EEEEEec--CCeEEEEECCCCCCCccceeeeEEecccCcCCCccceEEEeCCCCeEEEEEeCcCCCcc
Q 020019 49 CAKWDDSGR---RFIVSFL--DGGIGQVAVPDDYPPGTVLEEVTLVKDLELTGNGSLGLVLDHPRNRLLVVAADVFGNKY 123 (332)
Q Consensus 49 gia~d~~g~---~~~~~~~--~g~I~~vd~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~vd~~~g~l~v~~~~~~~~~~ 123 (332)
.+.|+|||+ ++|++.. ..+||..+..+++. + .+...++ .....++.||..+|.++....+ .
T Consensus 189 sP~wSPDG~~~~~~y~S~~~g~~~I~~~~l~~g~~-----~--~lt~~~g----~~~~p~wSPDG~~Laf~s~~~g---~ 254 (428)
T PRK01029 189 TPTWMHIGSGFPYLYVSYKLGVPKIFLGSLENPAG-----K--KILALQG----NQLMPTFSPRKKLLAFISDRYG---N 254 (428)
T ss_pred cceEccCCCceEEEEEEccCCCceEEEEECCCCCc-----e--EeecCCC----CccceEECCCCCEEEEEECCCC---C
Confidence 578999986 3345533 35799999987752 1 2332222 2335688887224444432111 1
Q ss_pred ceEEE--EECCCC---cEEEEEecCCCCCCCCCccceEECCCCc-EEEE-eC-CCCeEEEEcCC--CceEEEecCCCCCC
Q 020019 124 SAVAA--YDLSTW---NRLFLTQLSGPSDGKSCADDVTVDAEGN-AYVT-DV-TGSKIWKVGVK--GEFLSIISSPLFTP 193 (332)
Q Consensus 124 ~~l~~--~d~~~g---~~~~~~~l~~~~~~~~~~ndiavd~dG~-lyvt-d~-~~~~I~~v~~~--g~~~~~~~~~~~~~ 193 (332)
..++. |+.+++ +......- ........++.|||+ |+++ +. +...||+++.+ +...+.+...
T Consensus 255 ~di~~~~~~~~~g~~g~~~~lt~~-----~~~~~~~p~wSPDG~~Laf~s~~~g~~~ly~~~~~~~g~~~~~lt~~---- 325 (428)
T PRK01029 255 PDLFIQSFSLETGAIGKPRRLLNE-----AFGTQGNPSFSPDGTRLVFVSNKDGRPRIYIMQIDPEGQSPRLLTKK---- 325 (428)
T ss_pred cceeEEEeecccCCCCcceEeecC-----CCCCcCCeEECCCCCEEEEEECCCCCceEEEEECcccccceEEeccC----
Confidence 12333 566543 32222211 012234579999996 5554 43 33478888754 2222222111
Q ss_pred cccccCccccCeEEEccCc-eEEEEeCC--CCeEEEEeCCCCCCccceeEEEEecCCCCCCCCeEEEeCCCe-EEEE
Q 020019 194 KEWYKNLVGLNGIVYHPDG-FLIVIHTF--SGNLFKIDIVDGVGEGEEIKLIRVAGGPLSFGDGLELLSPTK-LVVA 266 (332)
Q Consensus 194 p~~~~~~~~~nGi~~~~dG-~Lyva~~~--~~~i~~id~~~~~~~~~~~~~v~~~g~~~~~pdGi~~~~dG~-l~va 266 (332)
.......+|+||| .|+++... ..+|+.++++++ ..+.+... . .......+.+||+ |+++
T Consensus 326 ------~~~~~~p~wSPDG~~Laf~~~~~g~~~I~v~dl~~g-----~~~~Lt~~--~-~~~~~p~wSpDG~~L~f~ 388 (428)
T PRK01029 326 ------YRNSSCPAWSPDGKKIAFCSVIKGVRQICVYDLATG-----RDYQLTTS--P-ENKESPSWAIDSLHLVYS 388 (428)
T ss_pred ------CCCccceeECCCCCEEEEEEcCCCCcEEEEEECCCC-----CeEEccCC--C-CCccceEECCCCCEEEEE
Confidence 0122456899999 77766543 347999999877 23333211 1 2334577888876 4444
|
|
| >PRK01742 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=97.78 E-value=0.026 Score=54.59 Aligned_cols=151 Identities=14% Similarity=0.175 Sum_probs=85.2
Q ss_pred cceEEEeCCCCeEEEEEeCcCCCccceEEEEECCCCcEEEEEecCCCCCCCCCccceEECCCCc-EEEEeCC--CCeEEE
Q 020019 99 SLGLVLDHPRNRLLVVAADVFGNKYSAVAAYDLSTWNRLFLTQLSGPSDGKSCADDVTVDAEGN-AYVTDVT--GSKIWK 175 (332)
Q Consensus 99 ~~gi~vd~~~g~l~v~~~~~~~~~~~~l~~~d~~~g~~~~~~~l~~~~~~~~~~ndiavd~dG~-lyvtd~~--~~~I~~ 175 (332)
.....+.|+..+|.++..+. +...|+.+|.++++......+. .....+++.|||+ |+++... .-.||.
T Consensus 206 v~~p~wSPDG~~la~~s~~~---~~~~i~i~dl~tg~~~~l~~~~------g~~~~~~wSPDG~~La~~~~~~g~~~Iy~ 276 (429)
T PRK01742 206 LMSPAWSPDGSKLAYVSFEN---KKSQLVVHDLRSGARKVVASFR------GHNGAPAFSPDGSRLAFASSKDGVLNIYV 276 (429)
T ss_pred cccceEcCCCCEEEEEEecC---CCcEEEEEeCCCCceEEEecCC------CccCceeECCCCCEEEEEEecCCcEEEEE
Confidence 46678899733444443221 2346899999888755443332 1223589999996 6665433 336899
Q ss_pred EcCCCceEEEecCCCCCCcccccCccccCeEEEccCc-eEEEEeC--CCCeEEEEeCCCCCCccceeEEEEecCCCCCCC
Q 020019 176 VGVKGEFLSIISSPLFTPKEWYKNLVGLNGIVYHPDG-FLIVIHT--FSGNLFKIDIVDGVGEGEEIKLIRVAGGPLSFG 252 (332)
Q Consensus 176 v~~~g~~~~~~~~~~~~~p~~~~~~~~~nGi~~~~dG-~Lyva~~--~~~~i~~id~~~~~~~~~~~~~v~~~g~~~~~p 252 (332)
++.++...+.+... .......+|+||| .|+++.. +.-+||.++..++ ..+.+... .
T Consensus 277 ~d~~~~~~~~lt~~----------~~~~~~~~wSpDG~~i~f~s~~~g~~~I~~~~~~~~-----~~~~l~~~----~-- 335 (429)
T PRK01742 277 MGANGGTPSQLTSG----------AGNNTEPSWSPDGQSILFTSDRSGSPQVYRMSASGG-----GASLVGGR----G-- 335 (429)
T ss_pred EECCCCCeEeeccC----------CCCcCCEEECCCCCEEEEEECCCCCceEEEEECCCC-----CeEEecCC----C--
Confidence 98775433322111 1124578999999 6776543 3447888887755 23333211 1
Q ss_pred CeEEEeCCCeEE-EEeCCceEEEEcCCC
Q 020019 253 DGLELLSPTKLV-VAGNPSARLVESSDG 279 (332)
Q Consensus 253 dGi~~~~dG~l~-va~~~~~~~v~~~dg 279 (332)
....+.+||+.+ ++.......+...+|
T Consensus 336 ~~~~~SpDG~~ia~~~~~~i~~~Dl~~g 363 (429)
T PRK01742 336 YSAQISADGKTLVMINGDNVVKQDLTSG 363 (429)
T ss_pred CCccCCCCCCEEEEEcCCCEEEEECCCC
Confidence 235677887644 444433343444545
|
|
| >PF01436 NHL: NHL repeat; InterPro: IPR001258 The NHL repeat, named after NCL-1, HT2A and Lin-41, is found largely in a large number of eukaryotic and prokaryotic proteins | Back alignment and domain information |
|---|
Probab=97.77 E-value=5.4e-05 Score=43.41 Aligned_cols=27 Identities=15% Similarity=0.127 Sum_probs=24.3
Q ss_pred cccCeEEEccCceEEEEeCCCCeEEEE
Q 020019 201 VGLNGIVYHPDGFLIVIHTFSGNLFKI 227 (332)
Q Consensus 201 ~~~nGi~~~~dG~Lyva~~~~~~i~~i 227 (332)
..|.||+++++|.|||+|..+++|+++
T Consensus 2 ~~P~gvav~~~g~i~VaD~~n~rV~vf 28 (28)
T PF01436_consen 2 NYPHGVAVDSDGNIYVADSGNHRVQVF 28 (28)
T ss_dssp SSEEEEEEETTSEEEEEECCCTEEEEE
T ss_pred cCCcEEEEeCCCCEEEEECCCCEEEEC
Confidence 468899999999999999999999875
|
For example, the repeat is found in a variety of enzymes of the copper type II, ascorbate-dependent monooxygenase family which catalyse the C terminus alpha-amidation of biological peptides []. In many it occurs in tandem arrays, for example in the ringfinger beta-box, coiled-coil (RBCC) eukaryotic growth regulators []. The 'Brain Tumor' protein (Brat) is one such growth regulator that contains a 6-bladed NHL-repeat beta-propeller [, ]. The NHL repeats are also found in serine/threonine protein kinase (STPK) in diverse range of pathogenic bacteria. These STPK are transmembrane receptors with a intracellular N-terminal kinase domain and extracellular C-terminal sensor domain. In the STPK, PknD, from Mycobacterium tuberculosis, the sensor domain forms a rigid, six-bladed b-propeller composed of NHL repeats with a flexible tether to the transmembrane domain.; GO: 0005515 protein binding; PDB: 3FVZ_A 3FW0_A 1RWL_A 1RWI_A 1Q7F_A. |
| >KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=97.75 E-value=0.0086 Score=57.26 Aligned_cols=189 Identities=14% Similarity=0.134 Sum_probs=115.6
Q ss_pred CccccceEEcCCCCEEEEEecCCeEEEEECCCCCCCccceeeeEEecccCcCCCccceEEEeCCCCeEEEEEeCcCCCcc
Q 020019 44 SFFRECAKWDDSGRRFIVSFLDGGIGQVAVPDDYPPGTVLEEVTLVKDLELTGNGSLGLVLDHPRNRLLVVAADVFGNKY 123 (332)
Q Consensus 44 ~~~pegia~d~~g~~~~~~~~~g~I~~vd~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~vd~~~g~l~v~~~~~~~~~~ 123 (332)
+.+|-++++.++|...+... ...|..+...++- .-+ ++++ .+.++++.++ +. +++-++ ..
T Consensus 405 g~QP~~lav~~d~~~avv~~-~~~iv~l~~~~~~---------~~~-~~~y---~~s~vAv~~~-~~-~vaVGG----~D 464 (603)
T KOG0318|consen 405 GSQPKGLAVLSDGGTAVVAC-ISDIVLLQDQTKV---------SSI-PIGY---ESSAVAVSPD-GS-EVAVGG----QD 464 (603)
T ss_pred CCCceeEEEcCCCCEEEEEe-cCcEEEEecCCcc---------eee-cccc---ccceEEEcCC-CC-EEEEec----cc
Confidence 45889999999987666553 2456666533222 111 2343 5678999997 66 444333 24
Q ss_pred ceEEEEECCCCcEEEEEecCCCCCCCCCccceEECCCCcEEEEeCCCCeEEEEcCCCceEEEecCCCCCCcccccCcccc
Q 020019 124 SAVAAYDLSTWNRLFLTQLSGPSDGKSCADDVTVDAEGNAYVTDVTGSKIWKVGVKGEFLSIISSPLFTPKEWYKNLVGL 203 (332)
Q Consensus 124 ~~l~~~d~~~g~~~~~~~l~~~~~~~~~~ndiavd~dG~lyvtd~~~~~I~~v~~~g~~~~~~~~~~~~~p~~~~~~~~~ 203 (332)
++|++|.++.++......+. +-..-+.++++.|||..+++.-.++.+..++...+.... ..-.| .....
T Consensus 465 gkvhvysl~g~~l~ee~~~~---~h~a~iT~vaySpd~~yla~~Da~rkvv~yd~~s~~~~~-~~w~F-------HtakI 533 (603)
T KOG0318|consen 465 GKVHVYSLSGDELKEEAKLL---EHRAAITDVAYSPDGAYLAAGDASRKVVLYDVASREVKT-NRWAF-------HTAKI 533 (603)
T ss_pred ceEEEEEecCCcccceeeee---cccCCceEEEECCCCcEEEEeccCCcEEEEEcccCceec-ceeee-------eeeeE
Confidence 67999998765543332221 113567889999999766665566777777765332210 00011 12346
Q ss_pred CeEEEccCceEEEEeCCCCeEEEEeCCCCCCccceeEEEEecCCCCCCCCeEEEeCCCeEEEEeCC
Q 020019 204 NGIVYHPDGFLIVIHTFSGNLFKIDIVDGVGEGEEIKLIRVAGGPLSFGDGLELLSPTKLVVAGNP 269 (332)
Q Consensus 204 nGi~~~~dG~Lyva~~~~~~i~~id~~~~~~~~~~~~~v~~~g~~~~~pdGi~~~~dG~l~va~~~ 269 (332)
|+++|+|+..+..+-.....|+.++.+.+ .+.+...+++..+...++.-.+..|.-++..
T Consensus 534 ~~~aWsP~n~~vATGSlDt~Viiysv~kP------~~~i~iknAH~~gVn~v~wlde~tvvSsG~D 593 (603)
T KOG0318|consen 534 NCVAWSPNNKLVATGSLDTNVIIYSVKKP------AKHIIIKNAHLGGVNSVAWLDESTVVSSGQD 593 (603)
T ss_pred EEEEeCCCceEEEeccccceEEEEEccCh------hhheEeccccccCceeEEEecCceEEeccCc
Confidence 89999999988877777778888888765 2224444344444667777666666555543
|
|
| >KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.75 E-value=0.0014 Score=57.08 Aligned_cols=180 Identities=15% Similarity=0.185 Sum_probs=108.9
Q ss_pred ccceEEcCCCCEEEEEecCCeEEEEECCCCCCCccceeeeEEecccCcCCCccceE---EEeCCCCeEEEEEeCcCCCcc
Q 020019 47 RECAKWDDSGRRFIVSFLDGGIGQVAVPDDYPPGTVLEEVTLVKDLELTGNGSLGL---VLDHPRNRLLVVAADVFGNKY 123 (332)
Q Consensus 47 pegia~d~~g~~~~~~~~~g~I~~vd~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi---~vd~~~g~l~v~~~~~~~~~~ 123 (332)
...++++.|.+.+++.-.+.-+..++.+.-+.+ .. ++- +++.|| ..=.. ++-+++..+ .
T Consensus 103 vk~~af~~ds~~lltgg~ekllrvfdln~p~Ap---p~--E~~-------ghtg~Ir~v~wc~e-D~~iLSSad-----d 164 (334)
T KOG0278|consen 103 VKAVAFSQDSNYLLTGGQEKLLRVFDLNRPKAP---PK--EIS-------GHTGGIRTVLWCHE-DKCILSSAD-----D 164 (334)
T ss_pred eeeEEecccchhhhccchHHHhhhhhccCCCCC---ch--hhc-------CCCCcceeEEEecc-CceEEeecc-----C
Confidence 356889998876665533333444444332210 11 121 133333 22222 333444333 3
Q ss_pred ceEEEEECCCCcEEEEEecCCCCCCCCCccceEECCCCcEEEEeCCCCeEEEEcCC--CceEEEecCCCCCCcccccCcc
Q 020019 124 SAVAAYDLSTWNRLFLTQLSGPSDGKSCADDVTVDAEGNAYVTDVTGSKIWKVGVK--GEFLSIISSPLFTPKEWYKNLV 201 (332)
Q Consensus 124 ~~l~~~d~~~g~~~~~~~l~~~~~~~~~~ndiavd~dG~lyvtd~~~~~I~~v~~~--g~~~~~~~~~~~~~p~~~~~~~ 201 (332)
..+..||-++|+.++...++ +.++.+-+.++|++..+.. .+.|.-.|++ +.+.. +..| .
T Consensus 165 ~tVRLWD~rTgt~v~sL~~~------s~VtSlEvs~dG~ilTia~-gssV~Fwdaksf~~lKs------~k~P------~ 225 (334)
T KOG0278|consen 165 KTVRLWDHRTGTEVQSLEFN------SPVTSLEVSQDGRILTIAY-GSSVKFWDAKSFGLLKS------YKMP------C 225 (334)
T ss_pred CceEEEEeccCcEEEEEecC------CCCcceeeccCCCEEEEec-CceeEEeccccccceee------ccCc------c
Confidence 45788999999998888774 4456789999997655543 4555556665 22211 1111 2
Q ss_pred ccCeEEEccCceEEEEeCCCCeEEEEeCCCCCCccceeEEEEecCCCCCCCCeEEEeCCCeEEEEeCC
Q 020019 202 GLNGIVYHPDGFLIVIHTFSGNLFKIDIVDGVGEGEEIKLIRVAGGPLSFGDGLELLSPTKLVVAGNP 269 (332)
Q Consensus 202 ~~nGi~~~~dG~Lyva~~~~~~i~~id~~~~~~~~~~~~~v~~~g~~~~~pdGi~~~~dG~l~va~~~ 269 (332)
..+.-.++|+-..||+-.....+|++|..++. .+... .. +..+-.-.+.+.|||.+|.++..
T Consensus 226 nV~SASL~P~k~~fVaGged~~~~kfDy~Tge----Ei~~~-nk-gh~gpVhcVrFSPdGE~yAsGSE 287 (334)
T KOG0278|consen 226 NVESASLHPKKEFFVAGGEDFKVYKFDYNTGE----EIGSY-NK-GHFGPVHCVRFSPDGELYASGSE 287 (334)
T ss_pred ccccccccCCCceEEecCcceEEEEEeccCCc----eeeec-cc-CCCCceEEEEECCCCceeeccCC
Confidence 34555688998999999999999999999882 33322 23 24455678899999999999754
|
|
| >cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases | Back alignment and domain information |
|---|
Probab=97.75 E-value=0.042 Score=54.08 Aligned_cols=192 Identities=15% Similarity=0.143 Sum_probs=95.3
Q ss_pred eEEEeCCCCeEEEEEeCcC------------CCccceEEEEECCCCcEEEEEecCCCCC-CCCCccceEE----CCCCc-
Q 020019 101 GLVLDHPRNRLLVVAADVF------------GNKYSAVAAYDLSTWNRLFLTQLSGPSD-GKSCADDVTV----DAEGN- 162 (332)
Q Consensus 101 gi~vd~~~g~l~v~~~~~~------------~~~~~~l~~~d~~~g~~~~~~~l~~~~~-~~~~~ndiav----d~dG~- 162 (332)
..++|+.++++|+...+.. ....+.|+.+|.++|+..+..+...+.. ....+.-..+ +-+|.
T Consensus 221 ~pa~d~~~g~V~vg~~~g~~~~~~~~~~~~~~~~~~~l~Ald~~tG~~~W~~~~~~~~~~~~~~~s~p~~~~~~~~~g~~ 300 (488)
T cd00216 221 SPTYDPKTNLVYVGTGNGSPWNWGGRRTPGDNLYTDSIVALDADTGKVKWFYQTTPHDLWDYDGPNQPSLADIKPKDGKP 300 (488)
T ss_pred CeeEeCCCCEEEEECCCCCCCccCCccCCCCCCceeeEEEEcCCCCCEEEEeeCCCCCCcccccCCCCeEEeccccCCCe
Confidence 4677876689999864321 0112479999999999998776532110 0011111111 12343
Q ss_pred ---EEEEeCCCCeEEEEcCC-CceEEEecCCCCCCcccccCccccCeEEEccCceEEEEe-----------------CCC
Q 020019 163 ---AYVTDVTGSKIWKVGVK-GEFLSIISSPLFTPKEWYKNLVGLNGIVYHPDGFLIVIH-----------------TFS 221 (332)
Q Consensus 163 ---lyvtd~~~~~I~~v~~~-g~~~~~~~~~~~~~p~~~~~~~~~nGi~~~~dG~Lyva~-----------------~~~ 221 (332)
+|+. ...|.++.+|.. |+..--.... ..+++.++ +.+|+.. ...
T Consensus 301 ~~~V~~g-~~~G~l~ald~~tG~~~W~~~~~-------------~~~~~~~~-~~vyv~~~~~~~~~~~~~~~~~~~~~~ 365 (488)
T cd00216 301 VPAIVHA-PKNGFFYVLDRTTGKLISARPEV-------------EQPMAYDP-GLVYLGAFHIPLGLPPQKKKRCKKPGK 365 (488)
T ss_pred eEEEEEE-CCCceEEEEECCCCcEeeEeEee-------------ccccccCC-ceEEEccccccccCcccccCCCCCCCc
Confidence 4554 456889999975 6643211110 11334443 5666632 235
Q ss_pred CeEEEEeCCCCCCccceeEEEEecC-C---CCCCC--CeEEEeCCCeEEEEeCC-ceEEEEcCCCceEEEEEeeecCCCc
Q 020019 222 GNLFKIDIVDGVGEGEEIKLIRVAG-G---PLSFG--DGLELLSPTKLVVAGNP-SARLVESSDGWETAAVVAKFSGPVH 294 (332)
Q Consensus 222 ~~i~~id~~~~~~~~~~~~~v~~~g-~---~~~~p--dGi~~~~dG~l~va~~~-~~~~v~~~dg~~~~~~~~~~~~~~~ 294 (332)
++|+.+|+.+++ .+=...... . .+..| .+-.+..++.||+.+.. ....+...+|...- ...+..+..
T Consensus 366 G~l~AlD~~tG~----~~W~~~~~~~~~~~~~g~~~~~~~~~~~g~~v~~g~~dG~l~ald~~tG~~lW--~~~~~~~~~ 439 (488)
T cd00216 366 GGLAALDPKTGK----VVWEKREGTIRDSWNIGFPHWGGSLATAGNLVFAGAADGYFRAFDATTGKELW--KFRTPSGIQ 439 (488)
T ss_pred eEEEEEeCCCCc----EeeEeeCCccccccccCCcccCcceEecCCeEEEECCCCeEEEEECCCCceee--EEECCCCce
Confidence 678888888773 111111110 0 00011 12222345788887643 33444566672211 122222212
Q ss_pred ccceEEEE-ECCeEEEEEecCc
Q 020019 295 RLATAATV-KDGRVYLNHMLGF 315 (332)
Q Consensus 295 ~~pt~va~-~~g~lyv~~~~g~ 315 (332)
..| +++ .+|++||....|-
T Consensus 440 a~P--~~~~~~g~~yv~~~~g~ 459 (488)
T cd00216 440 ATP--MTYEVNGKQYVGVMVGG 459 (488)
T ss_pred EcC--EEEEeCCEEEEEEEecC
Confidence 223 333 7899999766663
|
The alignment model contains an 8-bladed beta-propeller. |
| >KOG2055 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.73 E-value=0.0057 Score=57.53 Aligned_cols=231 Identities=11% Similarity=0.089 Sum_probs=135.6
Q ss_pred ceEEcCCCC-EEEEEecCCeEEEEECCCCCCCccceeeeEEecccC-cCCCccceEEEeCCCCeEEEEEeCcCCCccceE
Q 020019 49 CAKWDDSGR-RFIVSFLDGGIGQVAVPDDYPPGTVLEEVTLVKDLE-LTGNGSLGLVLDHPRNRLLVVAADVFGNKYSAV 126 (332)
Q Consensus 49 gia~d~~g~-~~~~~~~~g~I~~vd~~~~~~~~~~~~~~~~~~~~~-~~~~~~~gi~vd~~~g~l~v~~~~~~~~~~~~l 126 (332)
...+.++|. ..+++....-+|.+|..+.+. + -+..|. ....+..-.+|.++ +. |++..+ ..+.|
T Consensus 262 ~a~f~p~G~~~i~~s~rrky~ysyDle~ak~-----~---k~~~~~g~e~~~~e~FeVShd-~~-fia~~G----~~G~I 327 (514)
T KOG2055|consen 262 KAEFAPNGHSVIFTSGRRKYLYSYDLETAKV-----T---KLKPPYGVEEKSMERFEVSHD-SN-FIAIAG----NNGHI 327 (514)
T ss_pred eeeecCCCceEEEecccceEEEEeecccccc-----c---cccCCCCcccchhheeEecCC-CC-eEEEcc----cCceE
Confidence 456777777 555554455678888765542 1 111111 11123445677786 55 444443 24567
Q ss_pred EEEECCCCcEEEEEecCCCCCCCCCccceEECCCCcEEEEeCCCCeEEEEcCCCc-eEEEecCCCCCCcccccCccccCe
Q 020019 127 AAYDLSTWNRLFLTQLSGPSDGKSCADDVTVDAEGNAYVTDVTGSKIWKVGVKGE-FLSIISSPLFTPKEWYKNLVGLNG 205 (332)
Q Consensus 127 ~~~d~~~g~~~~~~~l~~~~~~~~~~ndiavd~dG~lyvtd~~~~~I~~v~~~g~-~~~~~~~~~~~~p~~~~~~~~~nG 205 (332)
..+-.++++......++ ....+++++.||...+...+.|.||.+|..-. ....+.+. +...-.-
T Consensus 328 ~lLhakT~eli~s~Kie------G~v~~~~fsSdsk~l~~~~~~GeV~v~nl~~~~~~~rf~D~---------G~v~gts 392 (514)
T KOG2055|consen 328 HLLHAKTKELITSFKIE------GVVSDFTFSSDSKELLASGGTGEVYVWNLRQNSCLHRFVDD---------GSVHGTS 392 (514)
T ss_pred Eeehhhhhhhhheeeec------cEEeeEEEecCCcEEEEEcCCceEEEEecCCcceEEEEeec---------Cccceee
Confidence 77778888877666553 45668999999975555556789999997633 22222221 1234457
Q ss_pred EEEccCceEEEEeCCCCeEEEEeCCCCCCc--cceeEEEEecCCCCCCCCeEEEeCCCeEEEE-eC---CceEEEEcCCC
Q 020019 206 IVYHPDGFLIVIHTFSGNLFKIDIVDGVGE--GEEIKLIRVAGGPLSFGDGLELLSPTKLVVA-GN---PSARLVESSDG 279 (332)
Q Consensus 206 i~~~~dG~Lyva~~~~~~i~~id~~~~~~~--~~~~~~v~~~g~~~~~pdGi~~~~dG~l~va-~~---~~~~~v~~~dg 279 (332)
||.+.+|.++.+-+.+|-|-.++.++-... .++++.+. .-....+.|.+.+|..|..- .. +..++|..+.-
T Consensus 393 ~~~S~ng~ylA~GS~~GiVNIYd~~s~~~s~~PkPik~~d---NLtt~Itsl~Fn~d~qiLAiaS~~~knalrLVHvPS~ 469 (514)
T KOG2055|consen 393 LCISLNGSYLATGSDSGIVNIYDGNSCFASTNPKPIKTVD---NLTTAITSLQFNHDAQILAIASRVKKNALRLVHVPSC 469 (514)
T ss_pred eeecCCCceEEeccCcceEEEeccchhhccCCCCchhhhh---hhheeeeeeeeCcchhhhhhhhhccccceEEEeccce
Confidence 888899976666677776555554421110 11233221 11135678999999775544 32 34577777643
Q ss_pred ceEEEEEeeecC--CCcccceEEEE-E-CCeEEEEEecCc
Q 020019 280 WETAAVVAKFSG--PVHRLATAATV-K-DGRVYLNHMLGF 315 (332)
Q Consensus 280 ~~~~~~~~~~~~--~~~~~pt~va~-~-~g~lyv~~~~g~ 315 (332)
++...++. ..+..++|++| . +|.|-+.+..|.
T Consensus 470 ----TVFsNfP~~n~~vg~vtc~aFSP~sG~lAvGNe~gr 505 (514)
T KOG2055|consen 470 ----TVFSNFPTSNTKVGHVTCMAFSPNSGYLAVGNEAGR 505 (514)
T ss_pred ----eeeccCCCCCCcccceEEEEecCCCceEEeecCCCc
Confidence 67776653 23677899999 4 677777666553
|
|
| >PF13449 Phytase-like: Esterase-like activity of phytase | Back alignment and domain information |
|---|
Probab=97.73 E-value=0.012 Score=54.82 Aligned_cols=128 Identities=15% Similarity=0.216 Sum_probs=78.6
Q ss_pred cceEEEeCCCCeEEEEEeCcC-CCccceEEEEECCCCcEEEEEecCCCC----------CCCCCccceEECCCCc-EEEE
Q 020019 99 SLGLVLDHPRNRLLVVAADVF-GNKYSAVAAYDLSTWNRLFLTQLSGPS----------DGKSCADDVTVDAEGN-AYVT 166 (332)
Q Consensus 99 ~~gi~vd~~~g~l~v~~~~~~-~~~~~~l~~~d~~~g~~~~~~~l~~~~----------~~~~~~ndiavd~dG~-lyvt 166 (332)
+-||++.+ +|.+||++.... ......|+.|+.+ |+....+.++..- ..+...-+|++.++|+ ||+.
T Consensus 87 ~Egi~~~~-~g~~~is~E~~~~~~~~p~I~~~~~~-G~~~~~~~vP~~~~~~~~~~~~~~~N~G~E~la~~~dG~~l~~~ 164 (326)
T PF13449_consen 87 PEGIAVPP-DGSFWISSEGGRTGGIPPRIRRFDLD-GRVIRRFPVPAAFLPDANGTSGRRNNRGFEGLAVSPDGRTLFAA 164 (326)
T ss_pred hhHeEEec-CCCEEEEeCCccCCCCCCEEEEECCC-CcccceEccccccccccCccccccCCCCeEEEEECCCCCEEEEE
Confidence 45999966 499999987531 0112579999987 7765555443210 1235677899999997 8875
Q ss_pred eCC-------C--------CeEEEEcCC--CceE-EE-ecCCCCCCcccccCccccCeEEEccCceEEEEeCC-------
Q 020019 167 DVT-------G--------SKIWKVGVK--GEFL-SI-ISSPLFTPKEWYKNLVGLNGIVYHPDGFLIVIHTF------- 220 (332)
Q Consensus 167 d~~-------~--------~~I~~v~~~--g~~~-~~-~~~~~~~~p~~~~~~~~~nGi~~~~dG~Lyva~~~------- 220 (332)
-.. . -+|+++++. ++.. .+ +....... .....++..++.-+|+.|+|-+-.
T Consensus 165 ~E~~l~~d~~~~~~~~~~~~ri~~~d~~~~~~~~~~~~y~ld~~~~---~~~~~~isd~~al~d~~lLvLER~~~~~~~~ 241 (326)
T PF13449_consen 165 MESPLKQDGPRANPDNGSPLRILRYDPKTPGEPVAEYAYPLDPPPT---APGDNGISDIAALPDGRLLVLERDFSPGTGN 241 (326)
T ss_pred ECccccCCCcccccccCceEEEEEecCCCCCccceEEEEeCCcccc---ccCCCCceeEEEECCCcEEEEEccCCCCccc
Confidence 321 1 357788865 3221 11 11111000 002356677888889999998876
Q ss_pred CCeEEEEeCCC
Q 020019 221 SGNLFKIDIVD 231 (332)
Q Consensus 221 ~~~i~~id~~~ 231 (332)
..+|+++++..
T Consensus 242 ~~ri~~v~l~~ 252 (326)
T PF13449_consen 242 YKRIYRVDLSD 252 (326)
T ss_pred eEEEEEEEccc
Confidence 45789999863
|
|
| >KOG0266 consensus WD40 repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.71 E-value=0.013 Score=57.21 Aligned_cols=161 Identities=15% Similarity=0.154 Sum_probs=105.9
Q ss_pred ccccceEEcCCCCEEEEEecCCeEEEEEC-CCCCCCccceeeeEEecccCcCCCccceEEEeCCCCeEEEEEeCcCCCcc
Q 020019 45 FFRECAKWDDSGRRFIVSFLDGGIGQVAV-PDDYPPGTVLEEVTLVKDLELTGNGSLGLVLDHPRNRLLVVAADVFGNKY 123 (332)
Q Consensus 45 ~~pegia~d~~g~~~~~~~~~g~I~~vd~-~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~vd~~~g~l~v~~~~~~~~~~ 123 (332)
.....++|.++|+.+++...+.+|..+|. +++.. ..++..++ ..+..+.++++ ++++++..+ .
T Consensus 204 ~~v~~~~fs~d~~~l~s~s~D~tiriwd~~~~~~~------~~~l~gH~----~~v~~~~f~p~-g~~i~Sgs~-----D 267 (456)
T KOG0266|consen 204 RGVSDVAFSPDGSYLLSGSDDKTLRIWDLKDDGRN------LKTLKGHS----TYVTSVAFSPD-GNLLVSGSD-----D 267 (456)
T ss_pred cceeeeEECCCCcEEEEecCCceEEEeeccCCCeE------EEEecCCC----CceEEEEecCC-CCEEEEecC-----C
Confidence 35567999999996666677888888887 33331 11332222 25689999997 776666543 4
Q ss_pred ceEEEEECCCCcEEEEEecCCCCCCCCCccceEECCCCcEEEEeCCCCeEEEEcCCCceEEEecCCCCCCcccccCcccc
Q 020019 124 SAVAAYDLSTWNRLFLTQLSGPSDGKSCADDVTVDAEGNAYVTDVTGSKIWKVGVKGEFLSIISSPLFTPKEWYKNLVGL 203 (332)
Q Consensus 124 ~~l~~~d~~~g~~~~~~~l~~~~~~~~~~ndiavd~dG~lyvtd~~~~~I~~v~~~g~~~~~~~~~~~~~p~~~~~~~~~ 203 (332)
+.+.+||.++++........ ....+++++.++|+++++.+..+.|..+|..+...+... .+.... ... -.
T Consensus 268 ~tvriWd~~~~~~~~~l~~h-----s~~is~~~f~~d~~~l~s~s~d~~i~vwd~~~~~~~~~~--~~~~~~--~~~-~~ 337 (456)
T KOG0266|consen 268 GTVRIWDVRTGECVRKLKGH-----SDGISGLAFSPDGNLLVSASYDGTIRVWDLETGSKLCLK--LLSGAE--NSA-PV 337 (456)
T ss_pred CcEEEEeccCCeEEEeeecc-----CCceEEEEECCCCCEEEEcCCCccEEEEECCCCceeeee--cccCCC--CCC-ce
Confidence 56889999998876554431 246778999999998888888999999998755422100 110000 001 24
Q ss_pred CeEEEccCc-eEEEEeCCCCeEEEEeCCCC
Q 020019 204 NGIVYHPDG-FLIVIHTFSGNLFKIDIVDG 232 (332)
Q Consensus 204 nGi~~~~dG-~Lyva~~~~~~i~~id~~~~ 232 (332)
.-+.++|+| +|+++ ..++.+--+++..+
T Consensus 338 ~~~~fsp~~~~ll~~-~~d~~~~~w~l~~~ 366 (456)
T KOG0266|consen 338 TSVQFSPNGKYLLSA-SLDRTLKLWDLRSG 366 (456)
T ss_pred eEEEECCCCcEEEEe-cCCCeEEEEEccCC
Confidence 788999999 55554 55666666666654
|
|
| >KOG0286 consensus G-protein beta subunit [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.68 E-value=0.036 Score=49.58 Aligned_cols=229 Identities=13% Similarity=0.106 Sum_probs=139.9
Q ss_pred ccccceEEcCCCCEEEEEecCCeEEEEECCCCCCCccceeeeEEecccCcCCCccceEEEeCCCCeEEEEEeCcCCCccc
Q 020019 45 FFRECAKWDDSGRRFIVSFLDGGIGQVAVPDDYPPGTVLEEVTLVKDLELTGNGSLGLVLDHPRNRLLVVAADVFGNKYS 124 (332)
Q Consensus 45 ~~pegia~d~~g~~~~~~~~~g~I~~vd~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~vd~~~g~l~v~~~~~~~~~~~ 124 (332)
-....+-|.+|.+.+++...+|++..+|.-+... + ..+..|. ..+...++.|. |+ +|+.++. .+
T Consensus 56 ~Ki~~~~ws~Dsr~ivSaSqDGklIvWDs~TtnK-----~--haipl~s---~WVMtCA~sPS-g~-~VAcGGL----dN 119 (343)
T KOG0286|consen 56 NKIYAMDWSTDSRRIVSASQDGKLIVWDSFTTNK-----V--HAIPLPS---SWVMTCAYSPS-GN-FVACGGL----DN 119 (343)
T ss_pred cceeeeEecCCcCeEEeeccCCeEEEEEcccccc-----e--eEEecCc---eeEEEEEECCC-CC-eEEecCc----Cc
Confidence 3556789999999998888899999999765542 1 2332232 25678899996 88 5555543 23
Q ss_pred eEEEEECCCC--c--EEEEEecCCCCCCCCCccceEECCCCcEEEEeCCCCeEEEEcCC-CceEEEecCCCCCCcccccC
Q 020019 125 AVAAYDLSTW--N--RLFLTQLSGPSDGKSCADDVTVDAEGNAYVTDVTGSKIWKVGVK-GEFLSIISSPLFTPKEWYKN 199 (332)
Q Consensus 125 ~l~~~d~~~g--~--~~~~~~l~~~~~~~~~~ndiavd~dG~lyvtd~~~~~I~~v~~~-g~~~~~~~~~~~~~p~~~~~ 199 (332)
.-.+|++++. + ......+.+. ..+...+.+-+|+ -.+|.++.....-.|.. |+..+.+....
T Consensus 120 ~Csiy~ls~~d~~g~~~v~r~l~gH---tgylScC~f~dD~-~ilT~SGD~TCalWDie~g~~~~~f~GH~--------- 186 (343)
T KOG0286|consen 120 KCSIYPLSTRDAEGNVRVSRELAGH---TGYLSCCRFLDDN-HILTGSGDMTCALWDIETGQQTQVFHGHT--------- 186 (343)
T ss_pred eeEEEecccccccccceeeeeecCc---cceeEEEEEcCCC-ceEecCCCceEEEEEcccceEEEEecCCc---------
Confidence 4456777643 2 2222335322 3577778887765 66777777665556643 66554432211
Q ss_pred ccccCeEEEcc-CceEEEEeCCCCeEEEEeCCCCCCccceeEEEEecCCCCCCCCeEEEeCCCeEEEEe--CCceEEEEc
Q 020019 200 LVGLNGIVYHP-DGFLIVIHTFSGNLFKIDIVDGVGEGEEIKLIRVAGGPLSFGDGLELLSPTKLVVAG--NPSARLVES 276 (332)
Q Consensus 200 ~~~~nGi~~~~-dG~Lyva~~~~~~i~~id~~~~~~~~~~~~~v~~~g~~~~~pdGi~~~~dG~l~va~--~~~~~~v~~ 276 (332)
.-..+|.+.| +++.||+-.-...-..+|...+ .-++.+.. .-.-...+.+-|+|.-|+++ +...|+...
T Consensus 187 -gDV~slsl~p~~~ntFvSg~cD~~aklWD~R~~----~c~qtF~g---hesDINsv~ffP~G~afatGSDD~tcRlyDl 258 (343)
T KOG0286|consen 187 -GDVMSLSLSPSDGNTFVSGGCDKSAKLWDVRSG----QCVQTFEG---HESDINSVRFFPSGDAFATGSDDATCRLYDL 258 (343)
T ss_pred -ccEEEEecCCCCCCeEEecccccceeeeeccCc----ceeEeecc---cccccceEEEccCCCeeeecCCCceeEEEee
Confidence 1235788999 7799998877666666777765 24554442 22345678888999888886 345676665
Q ss_pred CCCceEEEEEeeecCCCccc-ceEEEE-ECCeEEEEEecC
Q 020019 277 SDGWETAAVVAKFSGPVHRL-ATAATV-KDGRVYLNHMLG 314 (332)
Q Consensus 277 ~dg~~~~~~~~~~~~~~~~~-pt~va~-~~g~lyv~~~~g 314 (332)
..+ +...+-. .+.... .++++| ..|||..+....
T Consensus 259 RaD-~~~a~ys---~~~~~~gitSv~FS~SGRlLfagy~d 294 (343)
T KOG0286|consen 259 RAD-QELAVYS---HDSIICGITSVAFSKSGRLLFAGYDD 294 (343)
T ss_pred cCC-cEEeeec---cCcccCCceeEEEcccccEEEeeecC
Confidence 555 2222222 222223 478999 677777654433
|
|
| >TIGR03118 PEPCTERM_chp_1 conserved hypothetical protein TIGR03118 | Back alignment and domain information |
|---|
Probab=97.68 E-value=0.022 Score=51.46 Aligned_cols=206 Identities=11% Similarity=0.070 Sum_probs=109.4
Q ss_pred ccCcCCCccceEEEeCCCCeEEEEEeCcCCCccceEEEEECCC----CcE-EEEEecCCCCC--CCCCccceEECCCCcE
Q 020019 91 DLELTGNGSLGLVLDHPRNRLLVVAADVFGNKYSAVAAYDLST----WNR-LFLTQLSGPSD--GKSCADDVTVDAEGNA 163 (332)
Q Consensus 91 ~~~~~~~~~~gi~vd~~~g~l~v~~~~~~~~~~~~l~~~d~~~----g~~-~~~~~l~~~~~--~~~~~ndiavd~dG~l 163 (332)
+|.+. .++||++.|. +.+||++++ .+....||.+. +.. ...+.++.+.. ....|.++++..-...
T Consensus 19 Dp~L~--N~WGia~~p~-~~~WVadng-----T~~~TlYdg~~~~~~g~~~~L~vtiP~~~~~~~~~~PTGiVfN~~~~F 90 (336)
T TIGR03118 19 DPGLR--NAWGLSYRPG-GPFWVANTG-----TGTATLYVGNPDTQPLVQDPLVVVIPAPPPLAAEGTPTGQVFNGSDTF 90 (336)
T ss_pred Ccccc--ccceeEecCC-CCEEEecCC-----cceEEeecCCcccccCCccceEEEecCCCCCCCCCCccEEEEeCCCce
Confidence 44443 7899999995 999999975 34455677651 111 11244432221 2357888888754434
Q ss_pred EEEeCCC--CeEEE-EcCCCceEEEec--CCCCCCcc--c---ccCccccCeEEEccC--c-eEEEEeCCCCeEEEEeCC
Q 020019 164 YVTDVTG--SKIWK-VGVKGEFLSIIS--SPLFTPKE--W---YKNLVGLNGIVYHPD--G-FLIVIHTFSGNLFKIDIV 230 (332)
Q Consensus 164 yvtd~~~--~~I~~-v~~~g~~~~~~~--~~~~~~p~--~---~~~~~~~nGi~~~~d--G-~Lyva~~~~~~i~~id~~ 230 (332)
-|+.... ...+. .+.+|+...|.. .+..+.+. . .....-..|+|+... + .||.+|..+++|-.+|-.
T Consensus 91 ~vt~~g~~~~a~Fif~tEdGTisaW~p~v~~t~~~~~~~~~d~s~~gavYkGLAi~~~~~~~~LYaadF~~g~IDVFd~~ 170 (336)
T TIGR03118 91 VVSGEGITGPSRFLFVTEDGTLSGWAPALGTTRMTRAEIVVDASQQGNVYKGLAVGPTGGGDYLYAANFRQGRIDVFKGS 170 (336)
T ss_pred EEcCCCcccceeEEEEeCCceEEeecCcCCcccccccEEEEccCCCcceeeeeEEeecCCCceEEEeccCCCceEEecCc
Confidence 4443211 12222 233444443321 00100000 0 011234578888754 4 999999999999888754
Q ss_pred CCCCcccee-EEEEecCCCC-CCCCeEEEeCCCeEEEEe---CC-----------ceEEEEcCCCceEEEEEeeec-CCC
Q 020019 231 DGVGEGEEI-KLIRVAGGPL-SFGDGLELLSPTKLVVAG---NP-----------SARLVESSDGWETAAVVAKFS-GPV 293 (332)
Q Consensus 231 ~~~~~~~~~-~~v~~~g~~~-~~pdGi~~~~dG~l~va~---~~-----------~~~~v~~~dg~~~~~~~~~~~-~~~ 293 (332)
=.+. .+ ..+.-+.-+. -.|-+|.-- +++|||+= +. .-.-++..+| .++.++. ...
T Consensus 171 f~~~---~~~g~F~DP~iPagyAPFnIqni-g~~lyVtYA~qd~~~~d~v~G~G~G~VdvFd~~G----~l~~r~as~g~ 242 (336)
T TIGR03118 171 FRPP---PLPGSFIDPALPAGYAPFNVQNL-GGTLYVTYAQQDADRNDEVAGAGLGYVNVFTLNG----QLLRRVASSGR 242 (336)
T ss_pred cccc---cCCCCccCCCCCCCCCCcceEEE-CCeEEEEEEecCCcccccccCCCcceEEEEcCCC----cEEEEeccCCc
Confidence 2210 00 0000000011 257788654 48999991 11 0122567777 4444443 456
Q ss_pred cccceEEEE-E------CCeEEEEEe
Q 020019 294 HRLATAATV-K------DGRVYLNHM 312 (332)
Q Consensus 294 ~~~pt~va~-~------~g~lyv~~~ 312 (332)
|+.|.++++ . .+.|.|.|.
T Consensus 243 LNaPWG~a~APa~FG~~sg~lLVGNF 268 (336)
T TIGR03118 243 LNAPWGLAIAPESFGSLSGALLVGNF 268 (336)
T ss_pred ccCCceeeeChhhhCCCCCCeEEeec
Confidence 899999987 2 478888554
|
This model describes and uncharacterized conserved hypothetical protein. Members are found with the C-terminal putative exosortase interaction domain, PEP-CTERM, in Nitrosospira multiformis, Rhodoferax ferrireducens, Solibacter usitatus Ellin6076, and Acidobacteria bacterium Ellin345. It is found without the PEP-CTERM domain in several other species, including Burkholderia ambifaria, Gloeobacter violaceus PCC 7421, and three copies in the Acanthamoeba polyphaga mimivirus. |
| >COG3823 Glutamine cyclotransferase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.68 E-value=0.0014 Score=55.80 Aligned_cols=121 Identities=18% Similarity=0.206 Sum_probs=79.4
Q ss_pred cceEEEeCCCCeEEEEEeCcCCCccceEEEEECCCCcEEEEEecCCCCCCCCCccceEECCCCcEEEEeCCCCeEEEEcC
Q 020019 99 SLGLVLDHPRNRLLVVAADVFGNKYSAVAAYDLSTWNRLFLTQLSGPSDGKSCADDVTVDAEGNAYVTDVTGSKIWKVGV 178 (332)
Q Consensus 99 ~~gi~vd~~~g~l~v~~~~~~~~~~~~l~~~d~~~g~~~~~~~l~~~~~~~~~~ndiavd~dG~lyvtd~~~~~I~~v~~ 178 (332)
-+|++.|. .+|+.+++ ...|.--|+++-+....+++...+.+....|-+-.- ||.+|.--+...+|.|++|
T Consensus 133 GWgLt~d~--~~LimsdG------satL~frdP~tfa~~~~v~VT~~g~pv~~LNELE~V-dG~lyANVw~t~~I~rI~p 203 (262)
T COG3823 133 GWGLTSDD--KNLIMSDG------SATLQFRDPKTFAELDTVQVTDDGVPVSKLNELEWV-DGELYANVWQTTRIARIDP 203 (262)
T ss_pred ceeeecCC--cceEeeCC------ceEEEecCHHHhhhcceEEEEECCeecccccceeee-ccEEEEeeeeecceEEEcC
Confidence 47888886 45888875 345666688776655444442222234566777654 6889999999999999999
Q ss_pred C-CceEEEecCCCCCCc--ccccCccccCeEEEccCc-eEEEEeCCCCeEEEEe
Q 020019 179 K-GEFLSIISSPLFTPK--EWYKNLVGLNGIVYHPDG-FLIVIHTFSGNLFKID 228 (332)
Q Consensus 179 ~-g~~~~~~~~~~~~~p--~~~~~~~~~nGi~~~~dG-~Lyva~~~~~~i~~id 228 (332)
+ |+...+++-..+... .......-+||||+++++ ++|++--.=-.++.+.
T Consensus 204 ~sGrV~~widlS~L~~~~~~~~~~~nvlNGIA~~~~~~r~~iTGK~wp~lfEVk 257 (262)
T COG3823 204 DSGRVVAWIDLSGLLKELNLDKSNDNVLNGIAHDPQQDRFLITGKLWPLLFEVK 257 (262)
T ss_pred CCCcEEEEEEccCCchhcCccccccccccceeecCcCCeEEEecCcCceeEEEE
Confidence 8 888887654333211 011234468999999998 9999754433455443
|
|
| >PTZ00421 coronin; Provisional | Back alignment and domain information |
|---|
Probab=97.66 E-value=0.071 Score=52.48 Aligned_cols=207 Identities=10% Similarity=0.069 Sum_probs=114.8
Q ss_pred cccceEEcC-CCCEEEEEecCCeEEEEECCCCCCCccceeeeEEecccCcCCCccceEEEeCCCCeEEEEEeCcCCCccc
Q 020019 46 FRECAKWDD-SGRRFIVSFLDGGIGQVAVPDDYPPGTVLEEVTLVKDLELTGNGSLGLVLDHPRNRLLVVAADVFGNKYS 124 (332)
Q Consensus 46 ~pegia~d~-~g~~~~~~~~~g~I~~vd~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~vd~~~g~l~v~~~~~~~~~~~ 124 (332)
...+++|++ +++++++...++.|..|+..++.......+....+. + -...+..++++|+.+.++++... .+
T Consensus 77 ~V~~v~fsP~d~~~LaSgS~DgtIkIWdi~~~~~~~~~~~~l~~L~--g-H~~~V~~l~f~P~~~~iLaSgs~-----Dg 148 (493)
T PTZ00421 77 PIIDVAFNPFDPQKLFTASEDGTIMGWGIPEEGLTQNISDPIVHLQ--G-HTKKVGIVSFHPSAMNVLASAGA-----DM 148 (493)
T ss_pred CEEEEEEcCCCCCEEEEEeCCCEEEEEecCCCccccccCcceEEec--C-CCCcEEEEEeCcCCCCEEEEEeC-----CC
Confidence 446789999 778777777789998888654321000000001111 0 01256789999863344444332 35
Q ss_pred eEEEEECCCCcEEEEEecCCCCCCCCCccceEECCCCcEEEEeCCCCeEEEEcCC-CceEEEecCCCCCCcccccCcccc
Q 020019 125 AVAAYDLSTWNRLFLTQLSGPSDGKSCADDVTVDAEGNAYVTDVTGSKIWKVGVK-GEFLSIISSPLFTPKEWYKNLVGL 203 (332)
Q Consensus 125 ~l~~~d~~~g~~~~~~~l~~~~~~~~~~ndiavd~dG~lyvtd~~~~~I~~v~~~-g~~~~~~~~~~~~~p~~~~~~~~~ 203 (332)
.|.+||.++++....+.. . ....+++++.++|+++++-+..+.|..+|+. ++....+.... ....
T Consensus 149 tVrIWDl~tg~~~~~l~~--h---~~~V~sla~spdG~lLatgs~Dg~IrIwD~rsg~~v~tl~~H~---------~~~~ 214 (493)
T PTZ00421 149 VVNVWDVERGKAVEVIKC--H---SDQITSLEWNLDGSLLCTTSKDKKLNIIDPRDGTIVSSVEAHA---------SAKS 214 (493)
T ss_pred EEEEEECCCCeEEEEEcC--C---CCceEEEEEECCCCEEEEecCCCEEEEEECCCCcEEEEEecCC---------CCcc
Confidence 688999998876543321 1 2456789999999999998889999999976 44332221110 0112
Q ss_pred CeEEEccCc-eEEEEeC---CCCeEEEEeCCCCCCccceeEEEEecCCCCCCCCeEEEeCCCeEE-EEe--CCceEEEEc
Q 020019 204 NGIVYHPDG-FLIVIHT---FSGNLFKIDIVDGVGEGEEIKLIRVAGGPLSFGDGLELLSPTKLV-VAG--NPSARLVES 276 (332)
Q Consensus 204 nGi~~~~dG-~Lyva~~---~~~~i~~id~~~~~~~~~~~~~v~~~g~~~~~pdGi~~~~dG~l~-va~--~~~~~~v~~ 276 (332)
..+.+.+++ .+..+-. ..+.|..+|+.... ......... ......-..++++++++ ++. ...+++...
T Consensus 215 ~~~~w~~~~~~ivt~G~s~s~Dr~VklWDlr~~~---~p~~~~~~d--~~~~~~~~~~d~d~~~L~lggkgDg~Iriwdl 289 (493)
T PTZ00421 215 QRCLWAKRKDLIITLGCSKSQQRQIMLWDTRKMA---SPYSTVDLD--QSSALFIPFFDEDTNLLYIGSKGEGNIRCFEL 289 (493)
T ss_pred eEEEEcCCCCeEEEEecCCCCCCeEEEEeCCCCC---CceeEeccC--CCCceEEEEEcCCCCEEEEEEeCCCeEEEEEe
Confidence 356777777 4443322 34678778877542 123222221 11111123467786644 443 233444455
Q ss_pred CCC
Q 020019 277 SDG 279 (332)
Q Consensus 277 ~dg 279 (332)
.++
T Consensus 290 ~~~ 292 (493)
T PTZ00421 290 MNE 292 (493)
T ss_pred eCC
Confidence 555
|
|
| >TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family | Back alignment and domain information |
|---|
Probab=97.65 E-value=0.08 Score=52.63 Aligned_cols=82 Identities=16% Similarity=0.103 Sum_probs=51.9
Q ss_pred eEEEeCCCCeEEEEEeCc----CCC--c----cceEEEEECCCCcEEEEEecCCCCC-----CCCCccceEECCCCc---
Q 020019 101 GLVLDHPRNRLLVVAADV----FGN--K----YSAVAAYDLSTWNRLFLTQLSGPSD-----GKSCADDVTVDAEGN--- 162 (332)
Q Consensus 101 gi~vd~~~g~l~v~~~~~----~~~--~----~~~l~~~d~~~g~~~~~~~l~~~~~-----~~~~~ndiavd~dG~--- 162 (332)
.+.+|+++|.+|+....- ... . ...|..+|++||+.++.++.. |.+ ...-|.=+.++.+|+
T Consensus 238 ~~s~D~~~~lvy~~tGnp~p~~~~~r~gdnl~~~s~vAld~~TG~~~W~~Q~~-~~D~wD~d~~~~p~l~d~~~~G~~~~ 316 (527)
T TIGR03075 238 TGSYDPETNLIYFGTGNPSPWNSHLRPGDNLYTSSIVARDPDTGKIKWHYQTT-PHDEWDYDGVNEMILFDLKKDGKPRK 316 (527)
T ss_pred ceeEcCCCCeEEEeCCCCCCCCCCCCCCCCccceeEEEEccccCCEEEeeeCC-CCCCccccCCCCcEEEEeccCCcEEE
Confidence 579999989999987431 110 1 347889999999999887753 121 011221122224554
Q ss_pred EEEEeCCCCeEEEEcCC-CceE
Q 020019 163 AYVTDVTGSKIWKVGVK-GEFL 183 (332)
Q Consensus 163 lyvtd~~~~~I~~v~~~-g~~~ 183 (332)
+++.-..+|.+|.+|.. |+.+
T Consensus 317 ~v~~~~K~G~~~vlDr~tG~~i 338 (527)
T TIGR03075 317 LLAHADRNGFFYVLDRTNGKLL 338 (527)
T ss_pred EEEEeCCCceEEEEECCCCcee
Confidence 66677778888888875 6653
|
This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens. |
| >PRK00178 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=97.62 E-value=0.072 Score=51.39 Aligned_cols=142 Identities=15% Similarity=0.183 Sum_probs=81.8
Q ss_pred cceEEEeCCCCeEEEEEeCcCCCccceEEEEECCCCcEEEEEecCCCCCCCCCccceEECCCCc-EEEEeCC--CCeEEE
Q 020019 99 SLGLVLDHPRNRLLVVAADVFGNKYSAVAAYDLSTWNRLFLTQLSGPSDGKSCADDVTVDAEGN-AYVTDVT--GSKIWK 175 (332)
Q Consensus 99 ~~gi~vd~~~g~l~v~~~~~~~~~~~~l~~~d~~~g~~~~~~~l~~~~~~~~~~ndiavd~dG~-lyvtd~~--~~~I~~ 175 (332)
.....++|+..+|+++.... +...|+++|+++|+........ ......++.|||+ |+++-.. ...||.
T Consensus 201 ~~~p~wSpDG~~la~~s~~~---~~~~l~~~~l~~g~~~~l~~~~------g~~~~~~~SpDG~~la~~~~~~g~~~Iy~ 271 (430)
T PRK00178 201 ILSPRWSPDGKRIAYVSFEQ---KRPRIFVQNLDTGRREQITNFE------GLNGAPAWSPDGSKLAFVLSKDGNPEIYV 271 (430)
T ss_pred eeeeeECCCCCEEEEEEcCC---CCCEEEEEECCCCCEEEccCCC------CCcCCeEECCCCCEEEEEEccCCCceEEE
Confidence 35667888744554443221 2347999999988765433221 1223588999985 6665433 447999
Q ss_pred EcCCCceEEEecCCCCCCcccccCccccCeEEEccCc-eEEEEeCC--CCeEEEEeCCCCCCccceeEEEEecCCCCCCC
Q 020019 176 VGVKGEFLSIISSPLFTPKEWYKNLVGLNGIVYHPDG-FLIVIHTF--SGNLFKIDIVDGVGEGEEIKLIRVAGGPLSFG 252 (332)
Q Consensus 176 v~~~g~~~~~~~~~~~~~p~~~~~~~~~nGi~~~~dG-~Lyva~~~--~~~i~~id~~~~~~~~~~~~~v~~~g~~~~~p 252 (332)
++.+++....+.... .......|+||| .||++... ..+||++++.++ ..+.+...+ ...
T Consensus 272 ~d~~~~~~~~lt~~~----------~~~~~~~~spDg~~i~f~s~~~g~~~iy~~d~~~g-----~~~~lt~~~---~~~ 333 (430)
T PRK00178 272 MDLASRQLSRVTNHP----------AIDTEPFWGKDGRTLYFTSDRGGKPQIYKVNVNGG-----RAERVTFVG---NYN 333 (430)
T ss_pred EECCCCCeEEcccCC----------CCcCCeEECCCCCEEEEEECCCCCceEEEEECCCC-----CEEEeecCC---CCc
Confidence 998755333221111 122356899999 77765433 347999998876 334343322 122
Q ss_pred CeEEEeCCCe-EEEEe
Q 020019 253 DGLELLSPTK-LVVAG 267 (332)
Q Consensus 253 dGi~~~~dG~-l~va~ 267 (332)
....+.+||+ |+++.
T Consensus 334 ~~~~~Spdg~~i~~~~ 349 (430)
T PRK00178 334 ARPRLSADGKTLVMVH 349 (430)
T ss_pred cceEECCCCCEEEEEE
Confidence 3456778866 44443
|
|
| >KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=97.60 E-value=0.028 Score=49.71 Aligned_cols=190 Identities=15% Similarity=0.101 Sum_probs=111.5
Q ss_pred cceEEcCCCCEEEEEecCCeEEEEECCCCCCCccceeeeEEecccCcCCCccceEEEeCCCCeEEEEEeCcCCCccceEE
Q 020019 48 ECAKWDDSGRRFIVSFLDGGIGQVAVPDDYPPGTVLEEVTLVKDLELTGNGSLGLVLDHPRNRLLVVAADVFGNKYSAVA 127 (332)
Q Consensus 48 egia~d~~g~~~~~~~~~g~I~~vd~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~vd~~~g~l~v~~~~~~~~~~~~l~ 127 (332)
.-+-+..+|+++|+...+...-+|-..+++. +. ++.... ...+.+.+|.+..+|..... ...+.
T Consensus 14 TqiKyN~eGDLlFscaKD~~~~vw~s~nGer----lG--ty~GHt----GavW~~Did~~s~~liTGSA------D~t~k 77 (327)
T KOG0643|consen 14 TQIKYNREGDLLFSCAKDSTPTVWYSLNGER----LG--TYDGHT----GAVWCCDIDWDSKHLITGSA------DQTAK 77 (327)
T ss_pred ceEEecCCCcEEEEecCCCCceEEEecCCce----ee--eecCCC----ceEEEEEecCCcceeeeccc------cceeE
Confidence 4578889999999886555544444445541 11 221111 24677777776444433333 34467
Q ss_pred EEECCCCcEEEEEecCCCCCCCCCccceEECCCCcE--EEEeCCCC---eEEEEcCCCce-EEEecCCCCCCcccccCcc
Q 020019 128 AYDLSTWNRLFLTQLSGPSDGKSCADDVTVDAEGNA--YVTDVTGS---KIWKVGVKGEF-LSIISSPLFTPKEWYKNLV 201 (332)
Q Consensus 128 ~~d~~~g~~~~~~~l~~~~~~~~~~ndiavd~dG~l--yvtd~~~~---~I~~v~~~g~~-~~~~~~~~~~~p~~~~~~~ 201 (332)
.||.++|+.+..+..+.+. ..+-++.+|++ +.+|-..| .|..++..... ...-+.+.+..|. ...
T Consensus 78 LWDv~tGk~la~~k~~~~V------k~~~F~~~gn~~l~~tD~~mg~~~~v~~fdi~~~~~~~~s~ep~~kI~t---~~s 148 (327)
T KOG0643|consen 78 LWDVETGKQLATWKTNSPV------KRVDFSFGGNLILASTDKQMGYTCFVSVFDIRDDSSDIDSEEPYLKIPT---PDS 148 (327)
T ss_pred EEEcCCCcEEEEeecCCee------EEEeeccCCcEEEEEehhhcCcceEEEEEEccCChhhhcccCceEEecC---Ccc
Confidence 7999999998877764333 35788888874 55665443 45555432110 0001111111110 113
Q ss_pred ccCeEEEccCceEEEEeCCCCeEEEEeCCCCCCccceeEEEEecCCCCCCCCeEEEeCCCeEEEEeC
Q 020019 202 GLNGIVYHPDGFLIVIHTFSGNLFKIDIVDGVGEGEEIKLIRVAGGPLSFGDGLELLSPTKLVVAGN 268 (332)
Q Consensus 202 ~~nGi~~~~dG~Lyva~~~~~~i~~id~~~~~~~~~~~~~v~~~g~~~~~pdGi~~~~dG~l~va~~ 268 (332)
-++-..|++-+.-+|+-...+.|.++|..++. +.+......-.....|.+.+|...|++..
T Consensus 149 kit~a~Wg~l~~~ii~Ghe~G~is~~da~~g~------~~v~s~~~h~~~Ind~q~s~d~T~FiT~s 209 (327)
T KOG0643|consen 149 KITSALWGPLGETIIAGHEDGSISIYDARTGK------ELVDSDEEHSSKINDLQFSRDRTYFITGS 209 (327)
T ss_pred ceeeeeecccCCEEEEecCCCcEEEEEcccCc------eeeechhhhccccccccccCCcceEEecc
Confidence 46778899999566666778899999999872 12222111224567899999999999964
|
|
| >KOG0286 consensus G-protein beta subunit [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.59 E-value=0.04 Score=49.31 Aligned_cols=185 Identities=13% Similarity=0.133 Sum_probs=114.6
Q ss_pred cccceEEcCCCCEEEEEecCCeEEEEECCCCCCCccceeeeEEecccCcCCCccceEEEeCCCCeEEEEEeCcCCCccce
Q 020019 46 FRECAKWDDSGRRFIVSFLDGGIGQVAVPDDYPPGTVLEEVTLVKDLELTGNGSLGLVLDHPRNRLLVVAADVFGNKYSA 125 (332)
Q Consensus 46 ~pegia~d~~g~~~~~~~~~g~I~~vd~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~vd~~~g~l~v~~~~~~~~~~~~ 125 (332)
|....-+-+|+. ++++..+.+...+|..+++. .. .+..+. .-+.+|.+.|.+++.||...- ...
T Consensus 147 ylScC~f~dD~~-ilT~SGD~TCalWDie~g~~----~~--~f~GH~----gDV~slsl~p~~~ntFvSg~c-----D~~ 210 (343)
T KOG0286|consen 147 YLSCCRFLDDNH-ILTGSGDMTCALWDIETGQQ----TQ--VFHGHT----GDVMSLSLSPSDGNTFVSGGC-----DKS 210 (343)
T ss_pred eeEEEEEcCCCc-eEecCCCceEEEEEcccceE----EE--EecCCc----ccEEEEecCCCCCCeEEeccc-----ccc
Confidence 445566666654 44555566777888776652 11 232111 136788888855888887542 223
Q ss_pred EEEEECCCCcEEEEEecCCCCCCCCCccceEECCCCcEEEEeCCCCeEEEEc--CCCceEEEecCCCCCCcccccCcccc
Q 020019 126 VAAYDLSTWNRLFLTQLSGPSDGKSCADDVTVDAEGNAYVTDVTGSKIWKVG--VKGEFLSIISSPLFTPKEWYKNLVGL 203 (332)
Q Consensus 126 l~~~d~~~g~~~~~~~l~~~~~~~~~~ndiavd~dG~lyvtd~~~~~I~~v~--~~g~~~~~~~~~~~~~p~~~~~~~~~ 203 (332)
...||.+.+.-.+.+.- -.+-.|.+.+.|+|.-++|-+..+...-+| .|-++..+ ..+. ...+.
T Consensus 211 aklWD~R~~~c~qtF~g-----hesDINsv~ffP~G~afatGSDD~tcRlyDlRaD~~~a~y-s~~~--------~~~gi 276 (343)
T KOG0286|consen 211 AKLWDVRSGQCVQTFEG-----HESDINSVRFFPSGDAFATGSDDATCRLYDLRADQELAVY-SHDS--------IICGI 276 (343)
T ss_pred eeeeeccCcceeEeecc-----cccccceEEEccCCCeeeecCCCceeEEEeecCCcEEeee-ccCc--------ccCCc
Confidence 45689998866554432 135678899999999999988777655555 44444433 2211 24578
Q ss_pred CeEEEccCceEEEEeCCCCeEEEEeCCCCCCccceeEEEEecCCCCCCCCeEEEeCCCeEEEEe
Q 020019 204 NGIVYHPDGFLIVIHTFSGNLFKIDIVDGVGEGEEIKLIRVAGGPLSFGDGLELLSPTKLVVAG 267 (332)
Q Consensus 204 nGi~~~~dG~Lyva~~~~~~i~~id~~~~~~~~~~~~~v~~~g~~~~~pdGi~~~~dG~l~va~ 267 (332)
+.++|+..|+|.++-+....+..+|.-.+ +.+..+. | +-+....+.+.|||.-+.++
T Consensus 277 tSv~FS~SGRlLfagy~d~~c~vWDtlk~----e~vg~L~--G-HeNRvScl~~s~DG~av~Tg 333 (343)
T KOG0286|consen 277 TSVAFSKSGRLLFAGYDDFTCNVWDTLKG----ERVGVLA--G-HENRVSCLGVSPDGMAVATG 333 (343)
T ss_pred eeEEEcccccEEEeeecCCceeEeecccc----ceEEEee--c-cCCeeEEEEECCCCcEEEec
Confidence 99999999966666677777888877655 2333222 2 33556677777777655554
|
|
| >KOG1407 consensus WD40 repeat protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.53 E-value=0.034 Score=48.99 Aligned_cols=188 Identities=12% Similarity=0.108 Sum_probs=109.8
Q ss_pred cccceEEcCCCCEEEEEecCCeEEEEECCCCCCCccceeeeEEecccCcCCCccceEEEeCCCCeEEEEEeCcCCCccce
Q 020019 46 FRECAKWDDSGRRFIVSFLDGGIGQVAVPDDYPPGTVLEEVTLVKDLELTGNGSLGLVLDHPRNRLLVVAADVFGNKYSA 125 (332)
Q Consensus 46 ~pegia~d~~g~~~~~~~~~g~I~~vd~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~vd~~~g~l~v~~~~~~~~~~~~ 125 (332)
..+.++|..+|..+.....++.+..+..+.... .. .+... + -+..+.-++-++.+..++++..+ ...
T Consensus 22 ~v~Sv~wn~~g~~lasgs~dktv~v~n~e~~r~----~~--~~~~~-g-h~~svdql~w~~~~~d~~atas~-----dk~ 88 (313)
T KOG1407|consen 22 KVHSVAWNCDGTKLASGSFDKTVSVWNLERDRF----RK--ELVYR-G-HTDSVDQLCWDPKHPDLFATASG-----DKT 88 (313)
T ss_pred cceEEEEcccCceeeecccCCceEEEEecchhh----hh--hhccc-C-CCcchhhheeCCCCCcceEEecC-----Cce
Confidence 567899999998777665566655554443321 00 11110 0 01245567778776555655432 345
Q ss_pred EEEEECCCCcEEEEEecCCCCCCCCCccceEECCCCcEEEEeCCCCeEEEEcCCCceEEEecCCCCCCcccccCccccCe
Q 020019 126 VAAYDLSTWNRLFLTQLSGPSDGKSCADDVTVDAEGNAYVTDVTGSKIWKVGVKGEFLSIISSPLFTPKEWYKNLVGLNG 205 (332)
Q Consensus 126 l~~~d~~~g~~~~~~~l~~~~~~~~~~ndiavd~dG~lyvtd~~~~~I~~v~~~g~~~~~~~~~~~~~p~~~~~~~~~nG 205 (332)
+.+||.+.++....+...+ .-.-++..|+|+-.+.-.....|--+|.... .. ..... ...-.|-
T Consensus 89 ir~wd~r~~k~~~~i~~~~------eni~i~wsp~g~~~~~~~kdD~it~id~r~~-~~-~~~~~--------~~~e~ne 152 (313)
T KOG1407|consen 89 IRIWDIRSGKCTARIETKG------ENINITWSPDGEYIAVGNKDDRITFIDARTY-KI-VNEEQ--------FKFEVNE 152 (313)
T ss_pred EEEEEeccCcEEEEeeccC------cceEEEEcCCCCEEEEecCcccEEEEEeccc-ce-eehhc--------ccceeee
Confidence 7889999988876665421 1123666777654433334445555554311 11 11111 2345689
Q ss_pred EEEccCceEEEEeCCCCeEEEEeCCCCCCccceeEEEEecCCCCCCCCeEEEeCCCeEEEEeCC
Q 020019 206 IVYHPDGFLIVIHTFSGNLFKIDIVDGVGEGEEIKLIRVAGGPLSFGDGLELLSPTKLVVAGNP 269 (332)
Q Consensus 206 i~~~~dG~Lyva~~~~~~i~~id~~~~~~~~~~~~~v~~~g~~~~~pdGi~~~~dG~l~va~~~ 269 (332)
|++.-++.+|+...+.|+|-.+....- ++++.+... -..--.|.++|+|+-+.++..
T Consensus 153 ~~w~~~nd~Fflt~GlG~v~ILsypsL----kpv~si~AH---~snCicI~f~p~GryfA~GsA 209 (313)
T KOG1407|consen 153 ISWNNSNDLFFLTNGLGCVEILSYPSL----KPVQSIKAH---PSNCICIEFDPDGRYFATGSA 209 (313)
T ss_pred eeecCCCCEEEEecCCceEEEEecccc----ccccccccC---CcceEEEEECCCCceEeeccc
Confidence 999988899999998888765554433 245555532 244567888999998888754
|
|
| >KOG0266 consensus WD40 repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.53 E-value=0.04 Score=53.79 Aligned_cols=186 Identities=20% Similarity=0.322 Sum_probs=114.6
Q ss_pred ceEEcCCCCEEEEEecCCeEEEEECCCCCCCccceeeeEEecccCcCCCccceEEEeCCCCeEEEEEeCcCCCccceEEE
Q 020019 49 CAKWDDSGRRFIVSFLDGGIGQVAVPDDYPPGTVLEEVTLVKDLELTGNGSLGLVLDHPRNRLLVVAADVFGNKYSAVAA 128 (332)
Q Consensus 49 gia~d~~g~~~~~~~~~g~I~~vd~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~vd~~~g~l~v~~~~~~~~~~~~l~~ 128 (332)
.+.+.++|+.+.....++.+..+...+.+. .....+..-.....++++.++ +...++... ...|.+
T Consensus 164 ~~~fs~~g~~l~~~~~~~~i~~~~~~~~~~--------~~~~~l~~h~~~v~~~~fs~d-~~~l~s~s~-----D~tiri 229 (456)
T KOG0266|consen 164 CVDFSPDGRALAAASSDGLIRIWKLEGIKS--------NLLRELSGHTRGVSDVAFSPD-GSYLLSGSD-----DKTLRI 229 (456)
T ss_pred EEEEcCCCCeEEEccCCCcEEEeecccccc--------hhhccccccccceeeeEECCC-CcEEEEecC-----CceEEE
Confidence 367899999855555566666666543330 011111101126789999997 874444432 457889
Q ss_pred EECCC-CcEEEEEecCCCCCCCCCccceEECCCCcEEEEeCCCCeEEEEcCC-CceEEEecCCCCCCcccccCccccCeE
Q 020019 129 YDLST-WNRLFLTQLSGPSDGKSCADDVTVDAEGNAYVTDVTGSKIWKVGVK-GEFLSIISSPLFTPKEWYKNLVGLNGI 206 (332)
Q Consensus 129 ~d~~~-g~~~~~~~l~~~~~~~~~~ndiavd~dG~lyvtd~~~~~I~~v~~~-g~~~~~~~~~~~~~p~~~~~~~~~nGi 206 (332)
||.+. +..... +.+. ....+.+++.++|+++++-+..+.|...+.. |+....+... ..+.+++
T Consensus 230 wd~~~~~~~~~~--l~gH---~~~v~~~~f~p~g~~i~Sgs~D~tvriWd~~~~~~~~~l~~h----------s~~is~~ 294 (456)
T KOG0266|consen 230 WDLKDDGRNLKT--LKGH---STYVTSVAFSPDGNLLVSGSDDGTVRIWDVRTGECVRKLKGH----------SDGISGL 294 (456)
T ss_pred eeccCCCeEEEE--ecCC---CCceEEEEecCCCCEEEEecCCCcEEEEeccCCeEEEeeecc----------CCceEEE
Confidence 99943 344332 3222 2566899999999999999998988888876 4555443221 2346799
Q ss_pred EEccCceEEEEeCCCCeEEEEeCCCCCCccceeEEEEecCCCCC-CCCeEEEeCCCeEEEEe
Q 020019 207 VYHPDGFLIVIHTFSGNLFKIDIVDGVGEGEEIKLIRVAGGPLS-FGDGLELLSPTKLVVAG 267 (332)
Q Consensus 207 ~~~~dG~Lyva~~~~~~i~~id~~~~~~~~~~~~~v~~~g~~~~-~pdGi~~~~dG~l~va~ 267 (332)
++++||.++++....+.|..+|+.++... ..+.+... ... -..-+.+.++|+..++.
T Consensus 295 ~f~~d~~~l~s~s~d~~i~vwd~~~~~~~--~~~~~~~~--~~~~~~~~~~fsp~~~~ll~~ 352 (456)
T KOG0266|consen 295 AFSPDGNLLVSASYDGTIRVWDLETGSKL--CLKLLSGA--ENSAPVTSVQFSPNGKYLLSA 352 (456)
T ss_pred EECCCCCEEEEcCCCccEEEEECCCCcee--eeecccCC--CCCCceeEEEECCCCcEEEEe
Confidence 99999955555577888989999877210 01222211 111 23567778888866664
|
|
| >KOG0282 consensus mRNA splicing factor [Function unknown] | Back alignment and domain information |
|---|
Probab=97.52 E-value=0.0014 Score=61.72 Aligned_cols=203 Identities=12% Similarity=0.157 Sum_probs=129.8
Q ss_pred cceEEcCCCCEEEEEecCCeEEEEECCCCCCCccceeeeEEecccCcCCCccceEEEeCCCCeEEEEEeCcCCCccceEE
Q 020019 48 ECAKWDDSGRRFIVSFLDGGIGQVAVPDDYPPGTVLEEVTLVKDLELTGNGSLGLVLDHPRNRLLVVAADVFGNKYSAVA 127 (332)
Q Consensus 48 egia~d~~g~~~~~~~~~g~I~~vd~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~vd~~~g~l~v~~~~~~~~~~~~l~ 127 (332)
..+.+..+|+.|++...++.|--+|..+|+. .. .+.. +.-|..+.++|++.+++++.+. .++|.
T Consensus 262 rd~~~s~~g~~fLS~sfD~~lKlwDtETG~~----~~--~f~~-----~~~~~cvkf~pd~~n~fl~G~s-----d~ki~ 325 (503)
T KOG0282|consen 262 RDASFNNCGTSFLSASFDRFLKLWDTETGQV----LS--RFHL-----DKVPTCVKFHPDNQNIFLVGGS-----DKKIR 325 (503)
T ss_pred hhhhccccCCeeeeeecceeeeeeccccceE----EE--EEec-----CCCceeeecCCCCCcEEEEecC-----CCcEE
Confidence 4578999999999888889999999988872 22 2321 2257788899985588888652 46899
Q ss_pred EEECCCCcEEEEEecCCCCCCCCCccceEECCCCcEEEEeCCCCeEEEEcCCCc-eEEE-ecCCCCCCcccccCccccCe
Q 020019 128 AYDLSTWNRLFLTQLSGPSDGKSCADDVTVDAEGNAYVTDVTGSKIWKVGVKGE-FLSI-ISSPLFTPKEWYKNLVGLNG 205 (332)
Q Consensus 128 ~~d~~~g~~~~~~~l~~~~~~~~~~ndiavd~dG~lyvtd~~~~~I~~v~~~g~-~~~~-~~~~~~~~p~~~~~~~~~nG 205 (332)
.||.+++++++.+.- ....-+++.+-++|+-+|+.+....+...+-.-. .... .......- -.
T Consensus 326 ~wDiRs~kvvqeYd~-----hLg~i~~i~F~~~g~rFissSDdks~riWe~~~~v~ik~i~~~~~hsm----------P~ 390 (503)
T KOG0282|consen 326 QWDIRSGKVVQEYDR-----HLGAILDITFVDEGRRFISSSDDKSVRIWENRIPVPIKNIADPEMHTM----------PC 390 (503)
T ss_pred EEeccchHHHHHHHh-----hhhheeeeEEccCCceEeeeccCccEEEEEcCCCccchhhcchhhccC----------cc
Confidence 999999997654431 1356788999999988888776665555443311 1111 11111112 26
Q ss_pred EEEccCceEEEEeCCCCeEEEEeCCCCCCccceeEE---EEecCCCCCCCCeEEEeCCCeEEEEeCCceEEEEcCCCceE
Q 020019 206 IVYHPDGFLIVIHTFSGNLFKIDIVDGVGEGEEIKL---IRVAGGPLSFGDGLELLSPTKLVVAGNPSARLVESSDGWET 282 (332)
Q Consensus 206 i~~~~dG~Lyva~~~~~~i~~id~~~~~~~~~~~~~---v~~~g~~~~~pdGi~~~~dG~l~va~~~~~~~v~~~dg~~~ 282 (332)
|++.|.|..+.++...++|+-+..... ..-...+. .... +.+-.+.+.|||..+++++....+.+- +|++
T Consensus 391 ~~~~P~~~~~~aQs~dN~i~ifs~~~~-~r~nkkK~feGh~va----Gys~~v~fSpDG~~l~SGdsdG~v~~w--dwkt 463 (503)
T KOG0282|consen 391 LTLHPNGKWFAAQSMDNYIAIFSTVPP-FRLNKKKRFEGHSVA----GYSCQVDFSPDGRTLCSGDSDGKVNFW--DWKT 463 (503)
T ss_pred eecCCCCCeehhhccCceEEEEecccc-cccCHhhhhcceecc----CceeeEEEcCCCCeEEeecCCccEEEe--echh
Confidence 889999999999999999987765421 00001111 1222 356678888998888887654333222 2455
Q ss_pred EEEEee
Q 020019 283 AAVVAK 288 (332)
Q Consensus 283 ~~~~~~ 288 (332)
.++...
T Consensus 464 ~kl~~~ 469 (503)
T KOG0282|consen 464 TKLVSK 469 (503)
T ss_pred hhhhhc
Confidence 455443
|
|
| >PF05787 DUF839: Bacterial protein of unknown function (DUF839); InterPro: IPR008557 This family consists of bacterial proteins of unknown function | Back alignment and domain information |
|---|
Probab=97.50 E-value=0.0028 Score=62.56 Aligned_cols=122 Identities=20% Similarity=0.309 Sum_probs=70.2
Q ss_pred ccceEEEeCCCCeEEEEEeCcC--------------CCccceEEEEECCCC-------cEEEEEecCCC-----------
Q 020019 98 GSLGLVLDHPRNRLLVVAADVF--------------GNKYSAVAAYDLSTW-------NRLFLTQLSGP----------- 145 (332)
Q Consensus 98 ~~~gi~vd~~~g~l~v~~~~~~--------------~~~~~~l~~~d~~~g-------~~~~~~~l~~~----------- 145 (332)
.|-+|.+++.++.+|++..... .+..+.|++|++..+ +...++.-..|
T Consensus 351 RpEgi~~~p~~g~vY~a~T~~~~r~~~~~~~~n~~~~n~~G~I~r~~~~~~d~~~~~f~~~~~~~~g~~~~~~~~~~~~~ 430 (524)
T PF05787_consen 351 RPEGITVNPDDGEVYFALTNNSGRGESDVDAANPRAGNGYGQIYRYDPDGNDHAATTFTWELFLVGGDPTDASGNGSNKC 430 (524)
T ss_pred CccCeeEeCCCCEEEEEEecCCCCcccccccCCcccCCcccEEEEecccCCccccceeEEEEEEEecCcccccccccCcc
Confidence 5789999999899999975433 144578999998755 22111111100
Q ss_pred -CCCCCCccceEECCCCcEEEEeCC-CCe--EEEEcCCCceEEEecC---------CCCCCc-c--cccCccccCeEEEc
Q 020019 146 -SDGKSCADDVTVDAEGNAYVTDVT-GSK--IWKVGVKGEFLSIISS---------PLFTPK-E--WYKNLVGLNGIVYH 209 (332)
Q Consensus 146 -~~~~~~~ndiavd~dG~lyvtd~~-~~~--I~~v~~~g~~~~~~~~---------~~~~~p-~--~~~~~~~~nGi~~~ 209 (332)
......|..|++|++|+|||.+-. ... |.-+.++|+...+..+ +..... . ..+...-..|++|+
T Consensus 431 ~~~~f~sPDNL~~d~~G~LwI~eD~~~~~~~l~g~t~~G~~~~~~~~~G~~~~~~~~~~g~~~rf~~~P~gaE~tG~~fs 510 (524)
T PF05787_consen 431 DDNGFASPDNLAFDPDGNLWIQEDGGGSNNNLPGVTPDGEVYDFARNDGNNVWAYDPDTGELKRFLVGPNGAEITGPCFS 510 (524)
T ss_pred cCCCcCCCCceEECCCCCEEEEeCCCCCCcccccccccCceeeeeecccceeeeccccccceeeeccCCCCcccccceEC
Confidence 112468999999999999986433 222 2333344432221100 000000 0 01123456899999
Q ss_pred cCc-eEEEEeC
Q 020019 210 PDG-FLIVIHT 219 (332)
Q Consensus 210 ~dG-~Lyva~~ 219 (332)
||| +|||.-+
T Consensus 511 pDg~tlFvniQ 521 (524)
T PF05787_consen 511 PDGRTLFVNIQ 521 (524)
T ss_pred CCCCEEEEEEe
Confidence 999 9998643
|
|
| >KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.50 E-value=0.012 Score=51.44 Aligned_cols=145 Identities=14% Similarity=0.162 Sum_probs=96.2
Q ss_pred eEEcCCCCEEEEEecCCeEEEEECCCCCCCccceeeeEEecccCcCCCccceEEEeCCCCeEEEEEeCcCCCccceEEEE
Q 020019 50 AKWDDSGRRFIVSFLDGGIGQVAVPDDYPPGTVLEEVTLVKDLELTGNGSLGLVLDHPRNRLLVVAADVFGNKYSAVAAY 129 (332)
Q Consensus 50 ia~d~~g~~~~~~~~~g~I~~vd~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~vd~~~g~l~v~~~~~~~~~~~~l~~~ 129 (332)
+.|-...+-++++..++.|.-||-.+++. . .-+..+. .+..+.+..+ |++. +..+ .+.|.-|
T Consensus 149 v~wc~eD~~iLSSadd~tVRLWD~rTgt~----v---~sL~~~s----~VtSlEvs~d-G~il-Tia~-----gssV~Fw 210 (334)
T KOG0278|consen 149 VLWCHEDKCILSSADDKTVRLWDHRTGTE----V---QSLEFNS----PVTSLEVSQD-GRIL-TIAY-----GSSVKFW 210 (334)
T ss_pred EEEeccCceEEeeccCCceEEEEeccCcE----E---EEEecCC----CCcceeeccC-CCEE-EEec-----CceeEEe
Confidence 45555566677776778888888777762 1 2222221 5788999997 8744 3333 2357779
Q ss_pred ECCCCcEEEEEecCCCCCCCCCccceEECCCCcEEEEeCCCCeEEEEcCC-CceEEEecCCCCCCcccccCccccCeEEE
Q 020019 130 DLSTWNRLFLTQLSGPSDGKSCADDVTVDAEGNAYVTDVTGSKIWKVGVK-GEFLSIISSPLFTPKEWYKNLVGLNGIVY 208 (332)
Q Consensus 130 d~~~g~~~~~~~l~~~~~~~~~~ndiavd~dG~lyvtd~~~~~I~~v~~~-g~~~~~~~~~~~~~p~~~~~~~~~nGi~~ 208 (332)
|+++-.++..+.++ . ..+.-.+.|+..+||+-.....+|++|-+ |.-+...+..- +.....+.|
T Consensus 211 daksf~~lKs~k~P--~----nV~SASL~P~k~~fVaGged~~~~kfDy~TgeEi~~~nkgh---------~gpVhcVrF 275 (334)
T KOG0278|consen 211 DAKSFGLLKSYKMP--C----NVESASLHPKKEFFVAGGEDFKVYKFDYNTGEEIGSYNKGH---------FGPVHCVRF 275 (334)
T ss_pred ccccccceeeccCc--c----ccccccccCCCceEEecCcceEEEEEeccCCceeeecccCC---------CCceEEEEE
Confidence 99887777666662 1 23345668887899998888999999966 44332222211 123478999
Q ss_pred ccCceEEEEeCCCCeEEEE
Q 020019 209 HPDGFLIVIHTFSGNLFKI 227 (332)
Q Consensus 209 ~~dG~Lyva~~~~~~i~~i 227 (332)
+|||.+|.+-+..|+|.-+
T Consensus 276 SPdGE~yAsGSEDGTirlW 294 (334)
T KOG0278|consen 276 SPDGELYASGSEDGTIRLW 294 (334)
T ss_pred CCCCceeeccCCCceEEEE
Confidence 9999999999988876433
|
|
| >KOG2055 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.43 E-value=0.022 Score=53.74 Aligned_cols=186 Identities=15% Similarity=0.179 Sum_probs=114.1
Q ss_pred cceEEcCCCCEEEEEecCC--eEEEEECCCCCCCccceeeeEEecccCcCCCccceEEEeCCCCe-EEEEEeCcCCCccc
Q 020019 48 ECAKWDDSGRRFIVSFLDG--GIGQVAVPDDYPPGTVLEEVTLVKDLELTGNGSLGLVLDHPRNR-LLVVAADVFGNKYS 124 (332)
Q Consensus 48 egia~d~~g~~~~~~~~~g--~I~~vd~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~vd~~~g~-l~v~~~~~~~~~~~ 124 (332)
.++-++|.-.++++.-.++ +|+.||-..... ++...+ ..+ .....++.++ |. ..++.. +..
T Consensus 217 ~sv~FHp~~plllvaG~d~~lrifqvDGk~N~~----lqS~~l---~~f---Pi~~a~f~p~-G~~~i~~s~-----rrk 280 (514)
T KOG2055|consen 217 TSVQFHPTAPLLLVAGLDGTLRIFQVDGKVNPK----LQSIHL---EKF---PIQKAEFAPN-GHSVIFTSG-----RRK 280 (514)
T ss_pred eEEEecCCCceEEEecCCCcEEEEEecCccChh----heeeee---ccC---ccceeeecCC-CceEEEecc-----cce
Confidence 4678899888887774345 567776443321 121111 111 2345677775 76 344332 345
Q ss_pred eEEEEECCCCcEEEEEecCCCCCCCCCccceEECCCCcEEEEeCCCCeEEEEcCCCc-eEEEecCCCCCCcccccCcccc
Q 020019 125 AVAAYDLSTWNRLFLTQLSGPSDGKSCADDVTVDAEGNAYVTDVTGSKIWKVGVKGE-FLSIISSPLFTPKEWYKNLVGL 203 (332)
Q Consensus 125 ~l~~~d~~~g~~~~~~~l~~~~~~~~~~ndiavd~dG~lyvtd~~~~~I~~v~~~g~-~~~~~~~~~~~~p~~~~~~~~~ 203 (332)
.++.||+.+.++....++.+ .......-+.|.+++++.+....+|.|+.+....+ .+. .+..+ ...
T Consensus 281 y~ysyDle~ak~~k~~~~~g--~e~~~~e~FeVShd~~fia~~G~~G~I~lLhakT~eli~-----s~Kie------G~v 347 (514)
T KOG2055|consen 281 YLYSYDLETAKVTKLKPPYG--VEEKSMERFEVSHDSNFIAIAGNNGHIHLLHAKTKELIT-----SFKIE------GVV 347 (514)
T ss_pred EEEEeeccccccccccCCCC--cccchhheeEecCCCCeEEEcccCceEEeehhhhhhhhh-----eeeec------cEE
Confidence 68999999888766544432 12356777999999998888888999999887643 221 12111 235
Q ss_pred CeEEEccCc-eEEEEeCCCCeEEEEeCCCCCCccceeEEEEecCCCCCCCCeEEEeCCCeEEEEeCC
Q 020019 204 NGIVYHPDG-FLIVIHTFSGNLFKIDIVDGVGEGEEIKLIRVAGGPLSFGDGLELLSPTKLVVAGNP 269 (332)
Q Consensus 204 nGi~~~~dG-~Lyva~~~~~~i~~id~~~~~~~~~~~~~v~~~g~~~~~pdGi~~~~dG~l~va~~~ 269 (332)
.+++|+.|| .||++. ..|.||.+++.... .+.++.-.| .. .-.-++...+|.++.++..
T Consensus 348 ~~~~fsSdsk~l~~~~-~~GeV~v~nl~~~~----~~~rf~D~G-~v-~gts~~~S~ng~ylA~GS~ 407 (514)
T KOG2055|consen 348 SDFTFSSDSKELLASG-GTGEVYVWNLRQNS----CLHRFVDDG-SV-HGTSLCISLNGSYLATGSD 407 (514)
T ss_pred eeEEEecCCcEEEEEc-CCceEEEEecCCcc----eEEEEeecC-cc-ceeeeeecCCCceEEeccC
Confidence 689999999 666654 56799999998762 333333222 11 2234666788886666543
|
|
| >cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases | Back alignment and domain information |
|---|
Probab=97.41 E-value=0.038 Score=54.40 Aligned_cols=129 Identities=12% Similarity=0.020 Sum_probs=73.8
Q ss_pred cceEEEEECCCCcEEEEEecCCCCCCCCCccceEECCCCcEEEEe-----------------CCCCeEEEEcCC-CceEE
Q 020019 123 YSAVAAYDLSTWNRLFLTQLSGPSDGKSCADDVTVDAEGNAYVTD-----------------VTGSKIWKVGVK-GEFLS 184 (332)
Q Consensus 123 ~~~l~~~d~~~g~~~~~~~l~~~~~~~~~~ndiavd~dG~lyvtd-----------------~~~~~I~~v~~~-g~~~~ 184 (332)
.+.++.+|.++|++.+..+... .+++.++ +.+|+.. ...+.|+.+|.. |+.+
T Consensus 310 ~G~l~ald~~tG~~~W~~~~~~--------~~~~~~~-~~vyv~~~~~~~~~~~~~~~~~~~~~~G~l~AlD~~tG~~~- 379 (488)
T cd00216 310 NGFFYVLDRTTGKLISARPEVE--------QPMAYDP-GLVYLGAFHIPLGLPPQKKKRCKKPGKGGLAALDPKTGKVV- 379 (488)
T ss_pred CceEEEEECCCCcEeeEeEeec--------cccccCC-ceEEEccccccccCcccccCCCCCCCceEEEEEeCCCCcEe-
Confidence 4679999999999988765421 1245555 6677742 135789999965 6633
Q ss_pred EecCCCCCCccccc--CccccCeEEEccCceEEEEeCCCCeEEEEeCCCCCCccceeEEEEecCCCCCCCCeEEEeCCCe
Q 020019 185 IISSPLFTPKEWYK--NLVGLNGIVYHPDGFLIVIHTFSGNLFKIDIVDGVGEGEEIKLIRVAGGPLSFGDGLELLSPTK 262 (332)
Q Consensus 185 ~~~~~~~~~p~~~~--~~~~~nGi~~~~dG~Lyva~~~~~~i~~id~~~~~~~~~~~~~v~~~g~~~~~pdGi~~~~dG~ 262 (332)
+-. +......... .......++.. ++.||+.+ ..++|+.+|.++|+ .+-..++++.-...| +.+..+|+
T Consensus 380 W~~-~~~~~~~~~~~g~~~~~~~~~~~-g~~v~~g~-~dG~l~ald~~tG~----~lW~~~~~~~~~a~P--~~~~~~g~ 450 (488)
T cd00216 380 WEK-REGTIRDSWNIGFPHWGGSLATA-GNLVFAGA-ADGYFRAFDATTGK----ELWKFRTPSGIQATP--MTYEVNGK 450 (488)
T ss_pred eEe-eCCccccccccCCcccCcceEec-CCeEEEEC-CCCeEEEEECCCCc----eeeEEECCCCceEcC--EEEEeCCE
Confidence 211 1110000000 00001123443 45899886 57889999999883 444455542122345 55566899
Q ss_pred EEEEeCCc
Q 020019 263 LVVAGNPS 270 (332)
Q Consensus 263 l~va~~~~ 270 (332)
+||+....
T Consensus 451 ~yv~~~~g 458 (488)
T cd00216 451 QYVGVMVG 458 (488)
T ss_pred EEEEEEec
Confidence 99997543
|
The alignment model contains an 8-bladed beta-propeller. |
| >KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=97.39 E-value=0.085 Score=46.94 Aligned_cols=168 Identities=11% Similarity=0.116 Sum_probs=109.3
Q ss_pred ceeEEEecCCccccceEEcCCCCEEEEEecCCeEEEEECCCCCCCccceeeeEEecccCcCCCccceEEEeCCCCeEEEE
Q 020019 35 THVYHYHSSSFFRECAKWDDSGRRFIVSFLDGGIGQVAVPDDYPPGTVLEEVTLVKDLELTGNGSLGLVLDHPRNRLLVV 114 (332)
Q Consensus 35 ~~~i~~~~~~~~pegia~d~~g~~~~~~~~~g~I~~vd~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~vd~~~g~l~v~ 114 (332)
.....|.+...-.-++++++|.+-.++...+.+|..++..+.- .++..++.+ .+-+..+++.|+....+++
T Consensus 96 ~~t~~f~GH~~dVlsva~s~dn~qivSGSrDkTiklwnt~g~c-------k~t~~~~~~--~~WVscvrfsP~~~~p~Iv 166 (315)
T KOG0279|consen 96 ESTRRFVGHTKDVLSVAFSTDNRQIVSGSRDKTIKLWNTLGVC-------KYTIHEDSH--REWVSCVRFSPNESNPIIV 166 (315)
T ss_pred cEEEEEEecCCceEEEEecCCCceeecCCCcceeeeeeecccE-------EEEEecCCC--cCcEEEEEEcCCCCCcEEE
Confidence 3445566666666789999998888877778888888765332 123332211 2357889999965466777
Q ss_pred EeCcCCCccceEEEEECCCCcEEEEEecCCCCCCCCCccceEECCCCcEEEEeCCCCeEEEEcCC-CceEEEecCCCCCC
Q 020019 115 AADVFGNKYSAVAAYDLSTWNRLFLTQLSGPSDGKSCADDVTVDAEGNAYVTDVTGSKIWKVGVK-GEFLSIISSPLFTP 193 (332)
Q Consensus 115 ~~~~~~~~~~~l~~~d~~~g~~~~~~~l~~~~~~~~~~ndiavd~dG~lyvtd~~~~~I~~v~~~-g~~~~~~~~~~~~~ 193 (332)
... ....+.+||+++-+... .+. + ...+.|-+++.|||.+-.+-...+.++-.|.+ ++....++
T Consensus 167 s~s----~DktvKvWnl~~~~l~~--~~~--g-h~~~v~t~~vSpDGslcasGgkdg~~~LwdL~~~k~lysl~------ 231 (315)
T KOG0279|consen 167 SAS----WDKTVKVWNLRNCQLRT--TFI--G-HSGYVNTVTVSPDGSLCASGGKDGEAMLWDLNEGKNLYSLE------ 231 (315)
T ss_pred Ecc----CCceEEEEccCCcchhh--ccc--c-ccccEEEEEECCCCCEEecCCCCceEEEEEccCCceeEecc------
Confidence 653 23457889998766543 231 2 25788999999999998887777888887765 45433221
Q ss_pred cccccCccccCeEEEccCceEEEEeCCCCeEEEEeCCCC
Q 020019 194 KEWYKNLVGLNGIVYHPDGFLIVIHTFSGNLFKIDIVDG 232 (332)
Q Consensus 194 p~~~~~~~~~nGi~~~~dG~Lyva~~~~~~i~~id~~~~ 232 (332)
.+...+.++|+|+.+..-+-+.+. |--+++++.
T Consensus 232 -----a~~~v~sl~fspnrywL~~at~~s-IkIwdl~~~ 264 (315)
T KOG0279|consen 232 -----AFDIVNSLCFSPNRYWLCAATATS-IKIWDLESK 264 (315)
T ss_pred -----CCCeEeeEEecCCceeEeeccCCc-eEEEeccch
Confidence 233568999999983333333333 555666654
|
|
| >PTZ00420 coronin; Provisional | Back alignment and domain information |
|---|
Probab=97.39 E-value=0.18 Score=50.35 Aligned_cols=215 Identities=10% Similarity=0.052 Sum_probs=114.6
Q ss_pred EEEecCCccccceEEcCC-CCEEEEEecCCeEEEEECCCCCCC-ccceeeeEEecccCcCCCccceEEEeCCCCe-EEEE
Q 020019 38 YHYHSSSFFRECAKWDDS-GRRFIVSFLDGGIGQVAVPDDYPP-GTVLEEVTLVKDLELTGNGSLGLVLDHPRNR-LLVV 114 (332)
Q Consensus 38 i~~~~~~~~pegia~d~~-g~~~~~~~~~g~I~~vd~~~~~~~-~~~~~~~~~~~~~~~~~~~~~gi~vd~~~g~-l~v~ 114 (332)
..+.+.......++|+|+ ++++++...++.|..|+..++... ....+....+. + -...+..++++|+ +. ++++
T Consensus 68 ~~L~gH~~~V~~lafsP~~~~lLASgS~DgtIrIWDi~t~~~~~~~i~~p~~~L~--g-H~~~V~sVaf~P~-g~~iLaS 143 (568)
T PTZ00420 68 IKLKGHTSSILDLQFNPCFSEILASGSEDLTIRVWEIPHNDESVKEIKDPQCILK--G-HKKKISIIDWNPM-NYYIMCS 143 (568)
T ss_pred EEEcCCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCCccccccccceEEee--c-CCCcEEEEEECCC-CCeEEEE
Confidence 334444445678899997 677777777899988887543210 00000000111 1 0125678999996 54 3333
Q ss_pred EeCcCCCccceEEEEECCCCcEEEEEecCCCCCCCCCccceEECCCCcEEEEeCCCCeEEEEcCC-CceEEEecCCCCCC
Q 020019 115 AADVFGNKYSAVAAYDLSTWNRLFLTQLSGPSDGKSCADDVTVDAEGNAYVTDVTGSKIWKVGVK-GEFLSIISSPLFTP 193 (332)
Q Consensus 115 ~~~~~~~~~~~l~~~d~~~g~~~~~~~l~~~~~~~~~~ndiavd~dG~lyvtd~~~~~I~~v~~~-g~~~~~~~~~~~~~ 193 (332)
... .+.|..||+++++....+.. ......++++++|+++++....+.|..+|+. ++...-+.......
T Consensus 144 gS~-----DgtIrIWDl~tg~~~~~i~~------~~~V~SlswspdG~lLat~s~D~~IrIwD~Rsg~~i~tl~gH~g~~ 212 (568)
T PTZ00420 144 SGF-----DSFVNIWDIENEKRAFQINM------PKKLSSLKWNIKGNLLSGTCVGKHMHIIDPRKQEIASSFHIHDGGK 212 (568)
T ss_pred EeC-----CCeEEEEECCCCcEEEEEec------CCcEEEEEECCCCCEEEEEecCCEEEEEECCCCcEEEEEecccCCc
Confidence 321 35688999998876543332 1345679999999988887778889999987 44332221110000
Q ss_pred cccccCccccCeEEEccCc-eEEEEeCCC---CeEEEEeCCCCCCccceeEEEEecCCCCCCCCeE--EEeC-CCeEEEE
Q 020019 194 KEWYKNLVGLNGIVYHPDG-FLIVIHTFS---GNLFKIDIVDGVGEGEEIKLIRVAGGPLSFGDGL--ELLS-PTKLVVA 266 (332)
Q Consensus 194 p~~~~~~~~~nGi~~~~dG-~Lyva~~~~---~~i~~id~~~~~~~~~~~~~v~~~g~~~~~pdGi--~~~~-dG~l~va 266 (332)
. .....-..+++++ .|..+-... ++|..+|+.... ..+..+.... .+..+ ..|+ +|.+|++
T Consensus 213 ~-----s~~v~~~~fs~d~~~IlTtG~d~~~~R~VkLWDlr~~~---~pl~~~~ld~----~~~~L~p~~D~~tg~l~ls 280 (568)
T PTZ00420 213 N-----TKNIWIDGLGGDDNYILSTGFSKNNMREMKLWDLKNTT---SALVTMSIDN----ASAPLIPHYDESTGLIYLI 280 (568)
T ss_pred e-----eEEEEeeeEcCCCCEEEEEEcCCCCccEEEEEECCCCC---CceEEEEecC----CccceEEeeeCCCCCEEEE
Confidence 0 0000011234677 555444432 367777877421 2344443321 11111 2344 4888888
Q ss_pred eC--CceEEEEcCCC
Q 020019 267 GN--PSARLVESSDG 279 (332)
Q Consensus 267 ~~--~~~~~v~~~dg 279 (332)
+. ..+++.....+
T Consensus 281 GkGD~tIr~~e~~~~ 295 (568)
T PTZ00420 281 GKGDGNCRYYQHSLG 295 (568)
T ss_pred EECCCeEEEEEccCC
Confidence 63 33454444444
|
|
| >PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1 | Back alignment and domain information |
|---|
Probab=97.36 E-value=0.12 Score=47.87 Aligned_cols=213 Identities=12% Similarity=0.162 Sum_probs=115.9
Q ss_pred eeEEEecC-----CccccceEEcCCCCEEEEE--ecCCeEEEEECCCCCCCccceeeeEEecccCcCCCccceEEEeCCC
Q 020019 36 HVYHYHSS-----SFFRECAKWDDSGRRFIVS--FLDGGIGQVAVPDDYPPGTVLEEVTLVKDLELTGNGSLGLVLDHPR 108 (332)
Q Consensus 36 ~~i~~~~~-----~~~pegia~d~~g~~~~~~--~~~g~I~~vd~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~vd~~~ 108 (332)
..|.++.. ..++...++++||++.|+- .....|.+||...++ +.. -++-|+ ..++--.++
T Consensus 81 ~EI~iP~k~R~~~~~~~~~~~ls~dgk~~~V~N~TPa~SVtVVDl~~~k----vv~---ei~~PG-----C~~iyP~~~- 147 (342)
T PF06433_consen 81 GEIEIPPKPRAQVVPYKNMFALSADGKFLYVQNFTPATSVTVVDLAAKK----VVG---EIDTPG-----CWLIYPSGN- 147 (342)
T ss_dssp EEEEETTS-B--BS--GGGEEE-TTSSEEEEEEESSSEEEEEEETTTTE----EEE---EEEGTS-----EEEEEEEET-
T ss_pred ceEecCCcchheecccccceEEccCCcEEEEEccCCCCeEEEEECCCCc----eee---eecCCC-----EEEEEecCC-
Confidence 34555542 2377888999999976654 345689999998776 222 222243 334443333
Q ss_pred CeEEEEEeCcCCCccceEEEEECC-CCcEEEEE-ecCCCCCCCCCccceEECC-CCcEEEEeCCCCeEEEEcCCCceEEE
Q 020019 109 NRLLVVAADVFGNKYSAVAAYDLS-TWNRLFLT-QLSGPSDGKSCADDVTVDA-EGNAYVTDVTGSKIWKVGVKGEFLSI 185 (332)
Q Consensus 109 g~l~v~~~~~~~~~~~~l~~~d~~-~g~~~~~~-~l~~~~~~~~~~ndiavd~-dG~lyvtd~~~~~I~~v~~~g~~~~~ 185 (332)
.+.+..+.+ +.+..+.+. .|++.+.. .+-.+.. ....+.-+... ++++|+. +..|.||.++..|....+
T Consensus 148 ~~F~~lC~D------Gsl~~v~Ld~~Gk~~~~~t~~F~~~~-dp~f~~~~~~~~~~~~~F~-Sy~G~v~~~dlsg~~~~~ 219 (342)
T PF06433_consen 148 RGFSMLCGD------GSLLTVTLDADGKEAQKSTKVFDPDD-DPLFEHPAYSRDGGRLYFV-SYEGNVYSADLSGDSAKF 219 (342)
T ss_dssp TEEEEEETT------SCEEEEEETSTSSEEEEEEEESSTTT-S-B-S--EEETTTTEEEEE-BTTSEEEEEEETTSSEEE
T ss_pred CceEEEecC------CceEEEEECCCCCEeEeeccccCCCC-cccccccceECCCCeEEEE-ecCCEEEEEeccCCcccc
Confidence 444555543 445555554 46655432 2211221 23333444444 4567775 567999998877664433
Q ss_pred ec-CCCCC----CcccccCccccCeEEEccCc-eEEEEeCC---------CCeEEEEeCCCCCCccceeEEEEecCCCCC
Q 020019 186 IS-SPLFT----PKEWYKNLVGLNGIVYHPDG-FLIVIHTF---------SGNLFKIDIVDGVGEGEEIKLIRVAGGPLS 250 (332)
Q Consensus 186 ~~-~~~~~----~p~~~~~~~~~nGi~~~~dG-~Lyva~~~---------~~~i~~id~~~~~~~~~~~~~v~~~g~~~~ 250 (332)
.. ...+. ...|. ..|-+-+++++.. +|||.-.. .-.||.+|++++ +.+.+++++.
T Consensus 220 ~~~~~~~t~~e~~~~Wr--PGG~Q~~A~~~~~~rlyvLMh~g~~gsHKdpgteVWv~D~~t~----krv~Ri~l~~---- 289 (342)
T PF06433_consen 220 GKPWSLLTDAEKADGWR--PGGWQLIAYHAASGRLYVLMHQGGEGSHKDPGTEVWVYDLKTH----KRVARIPLEH---- 289 (342)
T ss_dssp EEEEESS-HHHHHTTEE--E-SSS-EEEETTTTEEEEEEEE--TT-TTS-EEEEEEEETTTT----EEEEEEEEEE----
T ss_pred cCcccccCccccccCcC--CcceeeeeeccccCeEEEEecCCCCCCccCCceEEEEEECCCC----eEEEEEeCCC----
Confidence 21 11111 01121 2355678998765 99997542 236899999988 4777787652
Q ss_pred CCCeEEEeCCCe--EEEEeCC--ceEEEEcCCC
Q 020019 251 FGDGLELLSPTK--LVVAGNP--SARLVESSDG 279 (332)
Q Consensus 251 ~pdGi~~~~dG~--l~va~~~--~~~~v~~~dg 279 (332)
..+.|.+..|.+ ||.++.. ...+....+|
T Consensus 290 ~~~Si~Vsqd~~P~L~~~~~~~~~l~v~D~~tG 322 (342)
T PF06433_consen 290 PIDSIAVSQDDKPLLYALSAGDGTLDVYDAATG 322 (342)
T ss_dssp EESEEEEESSSS-EEEEEETTTTEEEEEETTT-
T ss_pred ccceEEEccCCCcEEEEEcCCCCeEEEEeCcCC
Confidence 246899987755 6655533 2344455666
|
4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). |
| >PRK04043 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=97.36 E-value=0.06 Score=51.92 Aligned_cols=151 Identities=9% Similarity=0.087 Sum_probs=87.5
Q ss_pred ceEEcCCCCEE-EEEe--cCCeEEEEECCCCCCCccceeeeEEecccCcCCCccceEEEeCCCCeEEEEEeCcCCCccce
Q 020019 49 CAKWDDSGRRF-IVSF--LDGGIGQVAVPDDYPPGTVLEEVTLVKDLELTGNGSLGLVLDHPRNRLLVVAADVFGNKYSA 125 (332)
Q Consensus 49 gia~d~~g~~~-~~~~--~~g~I~~vd~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~vd~~~g~l~v~~~~~~~~~~~~ 125 (332)
...|+|||+.+ ++.. .+..|+.++..+++. . .+...++. -....+.|+..+|+++.... +...
T Consensus 237 ~~~~SPDG~~la~~~~~~g~~~Iy~~dl~~g~~-----~--~LT~~~~~----d~~p~~SPDG~~I~F~Sdr~---g~~~ 302 (419)
T PRK04043 237 VSDVSKDGSKLLLTMAPKGQPDIYLYDTNTKTL-----T--QITNYPGI----DVNGNFVEDDKRIVFVSDRL---GYPN 302 (419)
T ss_pred eeEECCCCCEEEEEEccCCCcEEEEEECCCCcE-----E--EcccCCCc----cCccEECCCCCEEEEEECCC---CCce
Confidence 36799999754 4432 245799999876652 1 22222211 12236788744677766432 2357
Q ss_pred EEEEECCCCcEEEEEecCCCCCCCCCccceEECCCCc-EEEEeCCC--------CeEEEEcCCCceEEEecCCCCCCccc
Q 020019 126 VAAYDLSTWNRLFLTQLSGPSDGKSCADDVTVDAEGN-AYVTDVTG--------SKIWKVGVKGEFLSIISSPLFTPKEW 196 (332)
Q Consensus 126 l~~~d~~~g~~~~~~~l~~~~~~~~~~ndiavd~dG~-lyvtd~~~--------~~I~~v~~~g~~~~~~~~~~~~~p~~ 196 (332)
|+++|+++|+..+...- + .. + ..++|||+ |.++.... ..|+.++.++...+.+....
T Consensus 303 Iy~~dl~~g~~~rlt~~---g--~~--~-~~~SPDG~~Ia~~~~~~~~~~~~~~~~I~v~d~~~g~~~~LT~~~------ 368 (419)
T PRK04043 303 IFMKKLNSGSVEQVVFH---G--KN--N-SSVSTYKNYIVYSSRETNNEFGKNTFNLYLISTNSDYIRRLTANG------ 368 (419)
T ss_pred EEEEECCCCCeEeCccC---C--Cc--C-ceECCCCCEEEEEEcCCCcccCCCCcEEEEEECCCCCeEECCCCC------
Confidence 99999998877543211 1 11 2 48899986 44433221 47999998754333322110
Q ss_pred ccCccccCeEEEccCc-eEEEEeCCC--CeEEEEeCCCC
Q 020019 197 YKNLVGLNGIVYHPDG-FLIVIHTFS--GNLFKIDIVDG 232 (332)
Q Consensus 197 ~~~~~~~nGi~~~~dG-~Lyva~~~~--~~i~~id~~~~ 232 (332)
......|+||| .|+++.... ..|+.+++++.
T Consensus 369 -----~~~~p~~SPDG~~I~f~~~~~~~~~L~~~~l~g~ 402 (419)
T PRK04043 369 -----VNQFPRFSSDGGSIMFIKYLGNQSALGIIRLNYN 402 (419)
T ss_pred -----CcCCeEECCCCCEEEEEEccCCcEEEEEEecCCC
Confidence 11236899999 676665433 35889998854
|
|
| >KOG0289 consensus mRNA splicing factor [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.32 E-value=0.14 Score=48.26 Aligned_cols=151 Identities=13% Similarity=0.123 Sum_probs=93.2
Q ss_pred ccceEEEeCCCCeEEEEEeCcCCCccceEEEEECCCCcEEEEEecCCCCCCCCCccceEECCCCcEEEEeCCCCeEEEEc
Q 020019 98 GSLGLVLDHPRNRLLVVAADVFGNKYSAVAAYDLSTWNRLFLTQLSGPSDGKSCADDVTVDAEGNAYVTDVTGSKIWKVG 177 (332)
Q Consensus 98 ~~~gi~vd~~~g~l~v~~~~~~~~~~~~l~~~d~~~g~~~~~~~l~~~~~~~~~~ndiavd~dG~lyvtd~~~~~I~~v~ 177 (332)
.+.++.+++. |.-++...+ .+...-.|.++|.......-. .. .-.....+++|||.|+.+-+..+.|-.+|
T Consensus 305 ~V~~ls~h~t-geYllsAs~-----d~~w~Fsd~~~g~~lt~vs~~--~s-~v~~ts~~fHpDgLifgtgt~d~~vkiwd 375 (506)
T KOG0289|consen 305 PVTGLSLHPT-GEYLLSASN-----DGTWAFSDISSGSQLTVVSDE--TS-DVEYTSAAFHPDGLIFGTGTPDGVVKIWD 375 (506)
T ss_pred cceeeeeccC-CcEEEEecC-----CceEEEEEccCCcEEEEEeec--cc-cceeEEeeEcCCceEEeccCCCceEEEEE
Confidence 4578999996 663333221 233444577777655443321 00 12345689999999999988888888888
Q ss_pred CCCceEEEecCCCCCCcccccCccccCeEEEccCceEEEEeCCCCeEEEEeCCCCCCccceeEEEEecCCCCCCCCeEEE
Q 020019 178 VKGEFLSIISSPLFTPKEWYKNLVGLNGIVYHPDGFLIVIHTFSGNLFKIDIVDGVGEGEEIKLIRVAGGPLSFGDGLEL 257 (332)
Q Consensus 178 ~~g~~~~~~~~~~~~~p~~~~~~~~~nGi~~~~dG~Lyva~~~~~~i~~id~~~~~~~~~~~~~v~~~g~~~~~pdGi~~ 257 (332)
...... ...|+. .-.-...|.|+.+|+..++..+.+.|.-+|+..-+ ..+.+... .......+.+
T Consensus 376 lks~~~----~a~Fpg-----ht~~vk~i~FsENGY~Lat~add~~V~lwDLRKl~----n~kt~~l~--~~~~v~s~~f 440 (506)
T KOG0289|consen 376 LKSQTN----VAKFPG-----HTGPVKAISFSENGYWLATAADDGSVKLWDLRKLK----NFKTIQLD--EKKEVNSLSF 440 (506)
T ss_pred cCCccc----cccCCC-----CCCceeEEEeccCceEEEEEecCCeEEEEEehhhc----ccceeecc--ccccceeEEE
Confidence 764321 122321 11124689999999555556667778889988542 35556554 2234567899
Q ss_pred eCCCeEEEEeCCceE
Q 020019 258 LSPTKLVVAGNPSAR 272 (332)
Q Consensus 258 ~~dG~l~va~~~~~~ 272 (332)
|..|+..+.......
T Consensus 441 D~SGt~L~~~g~~l~ 455 (506)
T KOG0289|consen 441 DQSGTYLGIAGSDLQ 455 (506)
T ss_pred cCCCCeEEeecceeE
Confidence 988887777654433
|
|
| >KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.30 E-value=0.0053 Score=55.40 Aligned_cols=163 Identities=12% Similarity=0.160 Sum_probs=96.7
Q ss_pred CccccceEEcCCCCEEEEEecCCeEEEEECCCCCCCccceeeeEEecccCc--CCCccceEEEeCCCCeEEEEEeCcCCC
Q 020019 44 SFFRECAKWDDSGRRFIVSFLDGGIGQVAVPDDYPPGTVLEEVTLVKDLEL--TGNGSLGLVLDHPRNRLLVVAADVFGN 121 (332)
Q Consensus 44 ~~~pegia~d~~g~~~~~~~~~g~I~~vd~~~~~~~~~~~~~~~~~~~~~~--~~~~~~gi~vd~~~g~l~v~~~~~~~~ 121 (332)
..++|+..++|||+.++++.-+|-|-+|+..+++.+.+ ..+.....+ ....+..|.+.+| -.+.....
T Consensus 213 KSh~EcA~FSPDgqyLvsgSvDGFiEVWny~~GKlrKD----LkYQAqd~fMMmd~aVlci~FSRD-sEMlAsGs----- 282 (508)
T KOG0275|consen 213 KSHVECARFSPDGQYLVSGSVDGFIEVWNYTTGKLRKD----LKYQAQDNFMMMDDAVLCISFSRD-SEMLASGS----- 282 (508)
T ss_pred ccchhheeeCCCCceEeeccccceeeeehhccchhhhh----hhhhhhcceeecccceEEEeeccc-HHHhhccC-----
Confidence 45999999999999777777789898888877764211 111111111 1135667777765 34333321
Q ss_pred ccceEEEEECCCCcEEEEEecCCCCCCCCCccceEECCCCcEEEEeCCCCeEEEEcCC-CceE-EEecCCCCCCcccccC
Q 020019 122 KYSAVAAYDLSTWNRLFLTQLSGPSDGKSCADDVTVDAEGNAYVTDVTGSKIWKVGVK-GEFL-SIISSPLFTPKEWYKN 199 (332)
Q Consensus 122 ~~~~l~~~d~~~g~~~~~~~l~~~~~~~~~~ndiavd~dG~lyvtd~~~~~I~~v~~~-g~~~-~~~~~~~~~~p~~~~~ 199 (332)
..+++.+|..++|+-.++++-. . ......+.+..|+.-..+.+....+.....+ ||.+ .+.+..
T Consensus 283 qDGkIKvWri~tG~ClRrFdrA--H--tkGvt~l~FSrD~SqiLS~sfD~tvRiHGlKSGK~LKEfrGHs---------- 348 (508)
T KOG0275|consen 283 QDGKIKVWRIETGQCLRRFDRA--H--TKGVTCLSFSRDNSQILSASFDQTVRIHGLKSGKCLKEFRGHS---------- 348 (508)
T ss_pred cCCcEEEEEEecchHHHHhhhh--h--ccCeeEEEEccCcchhhcccccceEEEeccccchhHHHhcCcc----------
Confidence 2467888998888755444321 1 1234457788887656665555555444443 5532 121222
Q ss_pred ccccCeEEEccCceEEEEeCCCCeEEEEeCCC
Q 020019 200 LVGLNGIVYHPDGFLIVIHTFSGNLFKIDIVD 231 (332)
Q Consensus 200 ~~~~nGi~~~~dG~Lyva~~~~~~i~~id~~~ 231 (332)
...|-..|.+||.-+++.+..+.|-.++..+
T Consensus 349 -Syvn~a~ft~dG~~iisaSsDgtvkvW~~Kt 379 (508)
T KOG0275|consen 349 -SYVNEATFTDDGHHIISASSDGTVKVWHGKT 379 (508)
T ss_pred -ccccceEEcCCCCeEEEecCCccEEEecCcc
Confidence 3457788999995555556677776666554
|
|
| >KOG1274 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.22 E-value=0.15 Score=51.98 Aligned_cols=201 Identities=16% Similarity=0.193 Sum_probs=116.6
Q ss_pred cceEEcCCCCEEEEEecCCeEEEEECCCC-CCCccceeeeEEecccCcCCCccceEEEeCCCCeEEEEEeCcCCCccceE
Q 020019 48 ECAKWDDSGRRFIVSFLDGGIGQVAVPDD-YPPGTVLEEVTLVKDLELTGNGSLGLVLDHPRNRLLVVAADVFGNKYSAV 126 (332)
Q Consensus 48 egia~d~~g~~~~~~~~~g~I~~vd~~~~-~~~~~~~~~~~~~~~~~~~~~~~~gi~vd~~~g~l~v~~~~~~~~~~~~l 126 (332)
..|.++++|..+++.-.+|.|.+++.... +.| ..+. ..+....+++... +++.++.. .+.+
T Consensus 17 t~i~~d~~gefi~tcgsdg~ir~~~~~sd~e~P-------~ti~---~~g~~v~~ia~~s--~~f~~~s~------~~tv 78 (933)
T KOG1274|consen 17 TLICYDPDGEFICTCGSDGDIRKWKTNSDEEEP-------ETID---ISGELVSSIACYS--NHFLTGSE------QNTV 78 (933)
T ss_pred EEEEEcCCCCEEEEecCCCceEEeecCCcccCC-------chhh---ccCceeEEEeecc--cceEEeec------cceE
Confidence 46899999997777777888999875433 110 1221 0122456777664 45455543 3457
Q ss_pred EEEECCCCcEE---EEEecCCCCCCCCCccceEECCCCcEEEEeCCCCeEEEEcCC-CceEEEecCCCCCCcccccCccc
Q 020019 127 AAYDLSTWNRL---FLTQLSGPSDGKSCADDVTVDAEGNAYVTDVTGSKIWKVGVK-GEFLSIISSPLFTPKEWYKNLVG 202 (332)
Q Consensus 127 ~~~d~~~g~~~---~~~~l~~~~~~~~~~ndiavd~dG~lyvtd~~~~~I~~v~~~-g~~~~~~~~~~~~~p~~~~~~~~ 202 (332)
.+|...+++.. .++.+ -.++++++.+|+..+.-+..-.|-.++.+ +.....+.. -..|
T Consensus 79 ~~y~fps~~~~~iL~Rftl--------p~r~~~v~g~g~~iaagsdD~~vK~~~~~D~s~~~~lrg--h~ap-------- 140 (933)
T KOG1274|consen 79 LRYKFPSGEEDTILARFTL--------PIRDLAVSGSGKMIAAGSDDTAVKLLNLDDSSQEKVLRG--HDAP-------- 140 (933)
T ss_pred EEeeCCCCCccceeeeeec--------cceEEEEecCCcEEEeecCceeEEEEeccccchheeecc--cCCc--------
Confidence 77777666543 23333 24679999999877766665666666644 222222211 1112
Q ss_pred cCeEEEccCceEEEEeCCCCeEEEEeCCCCCCccceeEEEE-ecCCCCCC-CCeEEEeCC-CeEEEEeCCceEEEEcCCC
Q 020019 203 LNGIVYHPDGFLIVIHTFSGNLFKIDIVDGVGEGEEIKLIR-VAGGPLSF-GDGLELLSP-TKLVVAGNPSARLVESSDG 279 (332)
Q Consensus 203 ~nGi~~~~dG~Lyva~~~~~~i~~id~~~~~~~~~~~~~v~-~~g~~~~~-pdGi~~~~d-G~l~va~~~~~~~v~~~dg 279 (332)
.-+|.++|+|.+.+.-..+|+|+.++++++.... ....+. -.+..... -.-++..|+ |++.+..-...+.+....+
T Consensus 141 Vl~l~~~p~~~fLAvss~dG~v~iw~~~~~~~~~-tl~~v~k~n~~~~s~i~~~~aW~Pk~g~la~~~~d~~Vkvy~r~~ 219 (933)
T KOG1274|consen 141 VLQLSYDPKGNFLAVSSCDGKVQIWDLQDGILSK-TLTGVDKDNEFILSRICTRLAWHPKGGTLAVPPVDNTVKVYSRKG 219 (933)
T ss_pred eeeeeEcCCCCEEEEEecCceEEEEEcccchhhh-hcccCCccccccccceeeeeeecCCCCeEEeeccCCeEEEEccCC
Confidence 3589999999766667788999999999763210 011111 00011111 123566787 7777776544456777888
Q ss_pred ceEEEE
Q 020019 280 WETAAV 285 (332)
Q Consensus 280 ~~~~~~ 285 (332)
|.....
T Consensus 220 we~~f~ 225 (933)
T KOG1274|consen 220 WELQFK 225 (933)
T ss_pred ceehee
Confidence 865443
|
|
| >COG3490 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=97.19 E-value=0.015 Score=51.99 Aligned_cols=154 Identities=13% Similarity=0.091 Sum_probs=87.2
Q ss_pred ccceEEEeCCCCeEEEEEeCcCCCccceEEEEECCCCcEEEEEecCCCCCCCCCccceEECCCCc-EEEEeC----CCCe
Q 020019 98 GSLGLVLDHPRNRLLVVAADVFGNKYSAVAAYDLSTWNRLFLTQLSGPSDGKSCADDVTVDAEGN-AYVTDV----TGSK 172 (332)
Q Consensus 98 ~~~gi~vd~~~g~l~v~~~~~~~~~~~~l~~~d~~~g~~~~~~~l~~~~~~~~~~ndiavd~dG~-lyvtd~----~~~~ 172 (332)
...||+++|...+- |+.... +....++||++..+......- ..+..|-..-++.+||. ||.|+. ..|.
T Consensus 69 R~Hgi~~~p~~~ra-vafARr---PGtf~~vfD~~~~~~pv~~~s---~~~RHfyGHGvfs~dG~~LYATEndfd~~rGV 141 (366)
T COG3490 69 RGHGIAFHPALPRA-VAFARR---PGTFAMVFDPNGAQEPVTLVS---QEGRHFYGHGVFSPDGRLLYATENDFDPNRGV 141 (366)
T ss_pred ccCCeecCCCCcce-EEEEec---CCceEEEECCCCCcCcEEEec---ccCceeecccccCCCCcEEEeecCCCCCCCce
Confidence 34677777764442 222221 234567899987765443322 22356777778999997 788754 3567
Q ss_pred EEEEcCCCceEEEecCCCCCCcccccCccccCeEEEccCc-eEEEEeCC--C----CeEEEEeCCCCCC--------ccc
Q 020019 173 IWKVGVKGEFLSIISSPLFTPKEWYKNLVGLNGIVYHPDG-FLIVIHTF--S----GNLFKIDIVDGVG--------EGE 237 (332)
Q Consensus 173 I~~v~~~g~~~~~~~~~~~~~p~~~~~~~~~nGi~~~~dG-~Lyva~~~--~----~~i~~id~~~~~~--------~~~ 237 (332)
|-.+|.+.++.++-+-+.+ ..+|.-+.+.+|| +|.+++.+ + ++. +.++++-+. .++
T Consensus 142 iGvYd~r~~fqrvgE~~t~--------GiGpHev~lm~DGrtlvvanGGIethpdfgR~-~lNldsMePSlvlld~atG~ 212 (366)
T COG3490 142 IGVYDAREGFQRVGEFSTH--------GIGPHEVTLMADGRTLVVANGGIETHPDFGRT-ELNLDSMEPSLVLLDAATGN 212 (366)
T ss_pred EEEEecccccceecccccC--------CcCcceeEEecCCcEEEEeCCceecccccCcc-ccchhhcCccEEEEeccccc
Confidence 7777776555554333332 3578999999999 77777652 1 111 122221100 011
Q ss_pred eeEEEEecC-CCCCCCCeEEEeCCCeEEEEe
Q 020019 238 EIKLIRVAG-GPLSFGDGLELLSPTKLVVAG 267 (332)
Q Consensus 238 ~~~~v~~~g-~~~~~pdGi~~~~dG~l~va~ 267 (332)
.++...++. .......-++.++||++|...
T Consensus 213 liekh~Lp~~l~~lSiRHld~g~dgtvwfgc 243 (366)
T COG3490 213 LIEKHTLPASLRQLSIRHLDIGRDGTVWFGC 243 (366)
T ss_pred hhhhccCchhhhhcceeeeeeCCCCcEEEEE
Confidence 222222220 111245678899999999995
|
|
| >PF02333 Phytase: Phytase; InterPro: IPR003431 Phytase (3 | Back alignment and domain information |
|---|
Probab=97.17 E-value=0.11 Score=49.03 Aligned_cols=164 Identities=17% Similarity=0.255 Sum_probs=80.4
Q ss_pred ccceEEEEECCCCcEEEEEecCCCCCCCCCccceEECC----CCc---E-EEEeCCC--C--eEEEEcCC-CceEEEecC
Q 020019 122 KYSAVAAYDLSTWNRLFLTQLSGPSDGKSCADDVTVDA----EGN---A-YVTDVTG--S--KIWKVGVK-GEFLSIISS 188 (332)
Q Consensus 122 ~~~~l~~~d~~~g~~~~~~~l~~~~~~~~~~ndiavd~----dG~---l-yvtd~~~--~--~I~~v~~~-g~~~~~~~~ 188 (332)
+.+.|++||++ |+.++.+.. .++|.+.+-- +|. | .+++... + +||+++++ |.+..+ ..
T Consensus 76 K~~GL~VYdL~-Gk~lq~~~~-------Gr~NNVDvrygf~l~g~~vDlavas~R~~g~n~l~~f~id~~~g~L~~v-~~ 146 (381)
T PF02333_consen 76 KKGGLYVYDLD-GKELQSLPV-------GRPNNVDVRYGFPLNGKTVDLAVASDRSDGRNSLRLFRIDPDTGELTDV-TD 146 (381)
T ss_dssp TTTEEEEEETT-S-EEEEE-S-------S-EEEEEEEEEEEETTEEEEEEEEEE-CCCT-EEEEEEEETTTTEEEE--CB
T ss_pred CCCCEEEEcCC-CcEEEeecC-------CCcceeeeecceecCCceEEEEEEecCcCCCCeEEEEEecCCCCcceEc-CC
Confidence 34678899986 555544432 2333332210 232 3 4566543 2 58889875 444332 22
Q ss_pred CCCCCcccccCccccCeEEEc---cCc--eEEEEeCCCCeEEEEeCC---CCCCccceeEEEEecCCCCCCCCeEEEeCC
Q 020019 189 PLFTPKEWYKNLVGLNGIVYH---PDG--FLIVIHTFSGNLFKIDIV---DGVGEGEEIKLIRVAGGPLSFGDGLELLSP 260 (332)
Q Consensus 189 ~~~~~p~~~~~~~~~nGi~~~---~dG--~Lyva~~~~~~i~~id~~---~~~~~~~~~~~v~~~g~~~~~pdGi~~~~d 260 (332)
+.. |. .....-+.|+|+- .+| ++++.. .++++..+.+. .++..++.++.+.++ +.+.|+++|..
T Consensus 147 ~~~--p~-~~~~~e~yGlcly~~~~~g~~ya~v~~-k~G~~~Qy~L~~~~~g~v~~~lVR~f~~~----sQ~EGCVVDDe 218 (381)
T PF02333_consen 147 PAA--PI-ATDLSEPYGLCLYRSPSTGALYAFVNG-KDGRVEQYELTDDGDGKVSATLVREFKVG----SQPEGCVVDDE 218 (381)
T ss_dssp TTC---E-E-SSSSEEEEEEEE-TTT--EEEEEEE-TTSEEEEEEEEE-TTSSEEEEEEEEEE-S----S-EEEEEEETT
T ss_pred CCc--cc-ccccccceeeEEeecCCCCcEEEEEec-CCceEEEEEEEeCCCCcEeeEEEEEecCC----CcceEEEEecc
Confidence 111 10 0123346799984 246 444444 45777555443 233333456666654 46899999966
Q ss_pred -CeEEEEe-CCceEEEEcC-CCceEEEEEeeecCCCc-ccceEEEE
Q 020019 261 -TKLVVAG-NPSARLVESS-DGWETAAVVAKFSGPVH-RLATAATV 302 (332)
Q Consensus 261 -G~l~va~-~~~~~~v~~~-dg~~~~~~~~~~~~~~~-~~pt~va~ 302 (332)
|.||+++ +..+|.+... ++....+++....+..+ .-..++++
T Consensus 219 ~g~LYvgEE~~GIW~y~Aep~~~~~~~~v~~~~g~~l~aDvEGlal 264 (381)
T PF02333_consen 219 TGRLYVGEEDVGIWRYDAEPEGGNDRTLVASADGDGLVADVEGLAL 264 (381)
T ss_dssp TTEEEEEETTTEEEEEESSCCC-S--EEEEEBSSSSB-S-EEEEEE
T ss_pred cCCEEEecCccEEEEEecCCCCCCcceeeecccccccccCccceEE
Confidence 9999997 4556765432 22234455543333333 23466777
|
1.3.8 from EC) (phytate 3-phosphatase) is a secreted enzyme which hydrolyses phytate to release inorganic phosphate. This family appears to represent a novel enzyme that shows phytase activity () and has been shown to consist of a single structural unit with a six-bladed propeller folding architecture ().; GO: 0016158 3-phytase activity; PDB: 3AMS_A 3AMR_A 1QLG_A 2POO_A 1H6L_A 1CVM_A 1POO_A. |
| >PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1 | Back alignment and domain information |
|---|
Probab=97.17 E-value=0.2 Score=46.35 Aligned_cols=150 Identities=12% Similarity=0.133 Sum_probs=88.5
Q ss_pred CCEEEEEe----cCCeEEEEECCCCCCCccceeeeEEecccCcCCCccceEEEeCCCCeEEEEEeCcC----CCccceEE
Q 020019 56 GRRFIVSF----LDGGIGQVAVPDDYPPGTVLEEVTLVKDLELTGNGSLGLVLDHPRNRLLVVAADVF----GNKYSAVA 127 (332)
Q Consensus 56 g~~~~~~~----~~g~I~~vd~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~vd~~~g~l~v~~~~~~----~~~~~~l~ 127 (332)
.++|+.+. -.++++.+|.++++. +. .++ .++ .+ .+.+++++..+|++..-.. +.+...|-
T Consensus 3 ~rvyV~D~~~~~~~~rv~viD~d~~k~----lG---mi~-~g~---~~-~~~~spdgk~~y~a~T~~sR~~rG~RtDvv~ 70 (342)
T PF06433_consen 3 HRVYVQDPVFFHMTSRVYVIDADSGKL----LG---MID-TGF---LG-NVALSPDGKTIYVAETFYSRGTRGERTDVVE 70 (342)
T ss_dssp TEEEEEE-GGGGSSEEEEEEETTTTEE----EE---EEE-EES---SE-EEEE-TTSSEEEEEEEEEEETTEEEEEEEEE
T ss_pred cEEEEECCccccccceEEEEECCCCcE----EE---Eee-ccc---CC-ceeECCCCCEEEEEEEEEeccccccceeEEE
Confidence 45677662 146899999887762 22 221 122 22 3678888778998875322 12345688
Q ss_pred EEECCCCcEEEEEecCCC-CC-CCCCccceEECCCCc-EEEEeC-CCCeEEEEcCCCc-eEEEecCCCCCCcccccCccc
Q 020019 128 AYDLSTWNRLFLTQLSGP-SD-GKSCADDVTVDAEGN-AYVTDV-TGSKIWKVGVKGE-FLSIISSPLFTPKEWYKNLVG 202 (332)
Q Consensus 128 ~~d~~~g~~~~~~~l~~~-~~-~~~~~ndiavd~dG~-lyvtd~-~~~~I~~v~~~g~-~~~~~~~~~~~~p~~~~~~~~ 202 (332)
+||.++-++...+.++.. .. ....++-+++..||+ +||-+. ....|-.+|...+ ...-+..+.+
T Consensus 71 ~~D~~TL~~~~EI~iP~k~R~~~~~~~~~~~ls~dgk~~~V~N~TPa~SVtVVDl~~~kvv~ei~~PGC----------- 139 (342)
T PF06433_consen 71 IWDTQTLSPTGEIEIPPKPRAQVVPYKNMFALSADGKFLYVQNFTPATSVTVVDLAAKKVVGEIDTPGC----------- 139 (342)
T ss_dssp EEETTTTEEEEEEEETTS-B--BS--GGGEEE-TTSSEEEEEEESSSEEEEEEETTTTEEEEEEEGTSE-----------
T ss_pred EEecCcCcccceEecCCcchheecccccceEEccCCcEEEEEccCCCCeEEEEECCCCceeeeecCCCE-----------
Confidence 899999888888888531 11 236789999999986 888775 4667999998754 4433333221
Q ss_pred cCeEEEccCceEEEEeCCCCeEEEEeCC
Q 020019 203 LNGIVYHPDGFLIVIHTFSGNLFKIDIV 230 (332)
Q Consensus 203 ~nGi~~~~dG~Lyva~~~~~~i~~id~~ 230 (332)
-+|-=.++.. +.+.=..|++..|.++
T Consensus 140 -~~iyP~~~~~-F~~lC~DGsl~~v~Ld 165 (342)
T PF06433_consen 140 -WLIYPSGNRG-FSMLCGDGSLLTVTLD 165 (342)
T ss_dssp -EEEEEEETTE-EEEEETTSCEEEEEET
T ss_pred -EEEEecCCCc-eEEEecCCceEEEEEC
Confidence 1222122223 3333456778777777
|
4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). |
| >PF02333 Phytase: Phytase; InterPro: IPR003431 Phytase (3 | Back alignment and domain information |
|---|
Probab=97.13 E-value=0.085 Score=49.71 Aligned_cols=139 Identities=23% Similarity=0.360 Sum_probs=73.4
Q ss_pred ccceEEE--eCCCCeEEEEEeCcCCCccceEEEEEC---CCCc----EEEEEecCCCCCCCCCccceEECCC-CcEEEEe
Q 020019 98 GSLGLVL--DHPRNRLLVVAADVFGNKYSAVAAYDL---STWN----RLFLTQLSGPSDGKSCADDVTVDAE-GNAYVTD 167 (332)
Q Consensus 98 ~~~gi~v--d~~~g~l~v~~~~~~~~~~~~l~~~d~---~~g~----~~~~~~l~~~~~~~~~~ndiavd~d-G~lyvtd 167 (332)
.+.|+++ ++.+|.+|+.-.+ +.+.+..|-+ ..|. +++.+.+. +-+-+|++|.. |.||+++
T Consensus 157 e~yGlcly~~~~~g~~ya~v~~----k~G~~~Qy~L~~~~~g~v~~~lVR~f~~~------sQ~EGCVVDDe~g~LYvgE 226 (381)
T PF02333_consen 157 EPYGLCLYRSPSTGALYAFVNG----KDGRVEQYELTDDGDGKVSATLVREFKVG------SQPEGCVVDDETGRLYVGE 226 (381)
T ss_dssp SEEEEEEEE-TTT--EEEEEEE----TTSEEEEEEEEE-TTSSEEEEEEEEEE-S------S-EEEEEEETTTTEEEEEE
T ss_pred cceeeEEeecCCCCcEEEEEec----CCceEEEEEEEeCCCCcEeeEEEEEecCC------CcceEEEEecccCCEEEec
Confidence 4778887 3445777876554 2334444433 3443 33444442 35678999987 7899999
Q ss_pred CCCCeEEEEcCC---CceEEEe---cCCCCCCcccccCccccCeEEEc--cC--ceEEEEeCCCCeEEEEeCCCCCCccc
Q 020019 168 VTGSKIWKVGVK---GEFLSII---SSPLFTPKEWYKNLVGLNGIVYH--PD--GFLIVIHTFSGNLFKIDIVDGVGEGE 237 (332)
Q Consensus 168 ~~~~~I~~v~~~---g~~~~~~---~~~~~~~p~~~~~~~~~nGi~~~--~d--G~Lyva~~~~~~i~~id~~~~~~~~~ 237 (332)
.. -.||+++.+ +...+.+ ....+.. -.-||++- .+ |+|++++.++++...++.+... .
T Consensus 227 E~-~GIW~y~Aep~~~~~~~~v~~~~g~~l~a--------DvEGlaly~~~~g~gYLivSsQG~~sf~Vy~r~~~~---~ 294 (381)
T PF02333_consen 227 ED-VGIWRYDAEPEGGNDRTLVASADGDGLVA--------DVEGLALYYGSDGKGYLIVSSQGDNSFAVYDREGPN---A 294 (381)
T ss_dssp TT-TEEEEEESSCCC-S--EEEEEBSSSSB-S---------EEEEEEEE-CCC-EEEEEEEGGGTEEEEEESSTT-----
T ss_pred Cc-cEEEEEecCCCCCCcceeeeccccccccc--------CccceEEEecCCCCeEEEEEcCCCCeEEEEecCCCC---c
Confidence 76 689999875 2222222 1112221 23477773 34 4999999999988888877432 1
Q ss_pred eeEEEEec-CC---CCCCCCeEEEe
Q 020019 238 EIKLIRVA-GG---PLSFGDGLELL 258 (332)
Q Consensus 238 ~~~~v~~~-g~---~~~~pdGi~~~ 258 (332)
.+..+.+. +. ....+||+++.
T Consensus 295 ~~g~f~i~~~~~idg~~eTDG~~v~ 319 (381)
T PF02333_consen 295 YVGSFRIGDGGGIDGVSETDGIEVV 319 (381)
T ss_dssp EEEEEEEE--SSS----S---EEEE
T ss_pred ccceEEeccCCCccccccCCcceEE
Confidence 23333321 11 12457777775
|
1.3.8 from EC) (phytate 3-phosphatase) is a secreted enzyme which hydrolyses phytate to release inorganic phosphate. This family appears to represent a novel enzyme that shows phytase activity () and has been shown to consist of a single structural unit with a six-bladed propeller folding architecture ().; GO: 0016158 3-phytase activity; PDB: 3AMS_A 3AMR_A 1QLG_A 2POO_A 1H6L_A 1CVM_A 1POO_A. |
| >PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea | Back alignment and domain information |
|---|
Probab=97.12 E-value=0.15 Score=48.54 Aligned_cols=237 Identities=14% Similarity=0.068 Sum_probs=97.9
Q ss_pred EecCCeEEEEECCCCCCCccceeeeEEeccc-CcC---C-CccceEEEeCCCCeEEEEEeCcC-CCccceEEEEECCCCc
Q 020019 62 SFLDGGIGQVAVPDDYPPGTVLEEVTLVKDL-ELT---G-NGSLGLVLDHPRNRLLVVAADVF-GNKYSAVAAYDLSTWN 135 (332)
Q Consensus 62 ~~~~g~I~~vd~~~~~~~~~~~~~~~~~~~~-~~~---~-~~~~gi~vd~~~g~l~v~~~~~~-~~~~~~l~~~d~~~g~ 135 (332)
.+..++||.+|..+.... ..-..+++ | +.. + ..|....--++ |+++|+..+.. .+..+.+..+|.++.+
T Consensus 94 gL~SsrIyviD~~~dPr~---P~l~KvIe-~~ev~~k~g~s~PHT~Hclp~-G~imIS~lGd~~G~g~Ggf~llD~~tf~ 168 (461)
T PF05694_consen 94 GLRSSRIYVIDTKTDPRK---PRLHKVIE-PEEVFEKTGLSRPHTVHCLPD-GRIMISALGDADGNGPGGFVLLDGETFE 168 (461)
T ss_dssp BTTT--EEEEE--S-TTS----EEEEEE--HHHHHHHH-EEEEEEEEE-SS---EEEEEEEETTS-S--EEEEE-TTT--
T ss_pred eeccCcEEEEECCCCCCC---CceEeeeC-HHHHHhhcCCCCCceeeecCC-ccEEEEeccCCCCCCCCcEEEEcCcccc
Confidence 388999999997643211 01113332 2 111 1 25666666675 98999876422 2345678899999888
Q ss_pred EEEEEecCCCCCCCCCccceEECCCCcEEEEe-CC-------------------CCeEEEEcCC-CceEEEecCCCCCCc
Q 020019 136 RLFLTQLSGPSDGKSCADDVTVDAEGNAYVTD-VT-------------------GSKIWKVGVK-GEFLSIISSPLFTPK 194 (332)
Q Consensus 136 ~~~~~~l~~~~~~~~~~ndiavd~dG~lyvtd-~~-------------------~~~I~~v~~~-g~~~~~~~~~~~~~p 194 (332)
+...++.. .....+..|+...|..|+-||. ++ ..++...|-. .+..+.++.+.-
T Consensus 169 v~g~We~~--~~~~~~gYDfw~qpr~nvMiSSeWg~P~~~~~Gf~~~d~~~~~yG~~l~vWD~~~r~~~Q~idLg~~--- 243 (461)
T PF05694_consen 169 VKGRWEKD--RGPQPFGYDFWYQPRHNVMISSEWGAPSMFEKGFNPEDLEAGKYGHSLHVWDWSTRKLLQTIDLGEE--- 243 (461)
T ss_dssp EEEE--SB---TT------EEEETTTTEEEE-B---HHHHTT---TTTHHHH-S--EEEEEETTTTEEEEEEES-TT---
T ss_pred ccceeccC--CCCCCCCCCeEEcCCCCEEEEeccCChhhcccCCChhHhhcccccCeEEEEECCCCcEeeEEecCCC---
Confidence 87777653 2235789999999998877764 32 3455555544 333433322100
Q ss_pred ccccCccccCeEE--EccCc-eEEEEeCCCCeEEEEeCC-CCCCccceeEEEEe---cCC---CC--------CCCCeEE
Q 020019 195 EWYKNLVGLNGIV--YHPDG-FLIVIHTFSGNLFKIDIV-DGVGEGEEIKLIRV---AGG---PL--------SFGDGLE 256 (332)
Q Consensus 195 ~~~~~~~~~nGi~--~~~dG-~Lyva~~~~~~i~~id~~-~~~~~~~~~~~v~~---~g~---~~--------~~pdGi~ 256 (332)
...|--|- .+|+- +=||....+.+||+|-.+ .+.-+.+.+-.+.. .+- ++ +-+..|.
T Consensus 244 -----g~~pLEvRflH~P~~~~gFvg~aLss~i~~~~k~~~g~W~a~kVi~ip~~~v~~~~lp~ml~~~~~~P~LitDI~ 318 (461)
T PF05694_consen 244 -----GQMPLEVRFLHDPDANYGFVGCALSSSIWRFYKDDDGEWAAEKVIDIPAKKVEGWILPEMLKPFGAVPPLITDIL 318 (461)
T ss_dssp -----EEEEEEEEE-SSTT--EEEEEEE--EEEEEEEE-ETTEEEEEEEEEE--EE--SS---GGGGGG-EE------EE
T ss_pred -----CCceEEEEecCCCCccceEEEEeccceEEEEEEcCCCCeeeeEEEECCCcccCcccccccccccccCCCceEeEE
Confidence 00111122 34555 778888888889888764 33211112222211 111 11 2356777
Q ss_pred EeCC-CeEEEEeC--CceEEEEcCCCceEEEEEeeecCC--------------C-cccceEEEE--ECCeEEEEEecC
Q 020019 257 LLSP-TKLVVAGN--PSARLVESSDGWETAAVVAKFSGP--------------V-HRLATAATV--KDGRVYLNHMLG 314 (332)
Q Consensus 257 ~~~d-G~l~va~~--~~~~~v~~~dg~~~~~~~~~~~~~--------------~-~~~pt~va~--~~g~lyv~~~~g 314 (332)
+..| --|||++. +..|.....|... -++...+..+ . ...|--+.. ++.||||++.+-
T Consensus 319 iSlDDrfLYvs~W~~GdvrqYDISDP~~-Pkl~gqv~lGG~~~~~~~~~v~g~~l~GgPqMvqlS~DGkRlYvTnSLy 395 (461)
T PF05694_consen 319 ISLDDRFLYVSNWLHGDVRQYDISDPFN-PKLVGQVFLGGSIRKGDHPVVKGKRLRGGPQMVQLSLDGKRLYVTNSLY 395 (461)
T ss_dssp E-TTS-EEEEEETTTTEEEEEE-SSTTS--EEEEEEE-BTTTT-B--TTS------S----EEE-TTSSEEEEE----
T ss_pred EccCCCEEEEEcccCCcEEEEecCCCCC-CcEEeEEEECcEeccCCCccccccccCCCCCeEEEccCCeEEEEEeecc
Confidence 7766 45999984 3456655555412 2333222110 0 112333444 789999976554
|
The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A. |
| >KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=97.10 E-value=0.058 Score=50.42 Aligned_cols=183 Identities=19% Similarity=0.207 Sum_probs=110.0
Q ss_pred cceEEcCCCCEEEEEecCCeEEEEECCCCCCCccceeeeEEecccCcCCCccceEEEeCCC-C-eEEEEEeCcCCCccce
Q 020019 48 ECAKWDDSGRRFIVSFLDGGIGQVAVPDDYPPGTVLEEVTLVKDLELTGNGSLGLVLDHPR-N-RLLVVAADVFGNKYSA 125 (332)
Q Consensus 48 egia~d~~g~~~~~~~~~g~I~~vd~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~vd~~~-g-~l~v~~~~~~~~~~~~ 125 (332)
-+..++.++..+++..+.|.+-.++..+... .. ++....+ ...++.++|.. + .|--|..| +.
T Consensus 179 s~~~fS~ds~~laT~swsG~~kvW~~~~~~~----~~--~l~gH~~----~v~~~~fhP~~~~~~lat~s~D------gt 242 (459)
T KOG0272|consen 179 SGCSFSRDSKHLATGSWSGLVKVWSVPQCNL----LQ--TLRGHTS----RVGAAVFHPVDSDLNLATASAD------GT 242 (459)
T ss_pred eeeEeecCCCeEEEeecCCceeEeecCCcce----eE--EEecccc----ceeeEEEccCCCccceeeeccC------Cc
Confidence 3567899999999888888877777655542 12 3432221 46688888862 3 33333333 23
Q ss_pred EEEEECCCCcEEEEEecCCCCCCCCCccceEECCCCcEEEEeCCC--CeEEEEcCCCceEEEecCCCCCCcccccCcccc
Q 020019 126 VAAYDLSTWNRLFLTQLSGPSDGKSCADDVTVDAEGNAYVTDVTG--SKIWKVGVKGEFLSIISSPLFTPKEWYKNLVGL 203 (332)
Q Consensus 126 l~~~d~~~g~~~~~~~l~~~~~~~~~~ndiavd~dG~lyvtd~~~--~~I~~v~~~g~~~~~~~~~~~~~p~~~~~~~~~ 203 (332)
+..|+.++-+++ -++.+. ..+...+++.|+|....|.+.. -++|-+...-+....-+ .-.+.
T Consensus 243 vklw~~~~e~~l--~~l~gH---~~RVs~VafHPsG~~L~TasfD~tWRlWD~~tk~ElL~QEG-----------Hs~~v 306 (459)
T KOG0272|consen 243 VKLWKLSQETPL--QDLEGH---LARVSRVAFHPSGKFLGTASFDSTWRLWDLETKSELLLQEG-----------HSKGV 306 (459)
T ss_pred eeeeccCCCcch--hhhhcc---hhhheeeeecCCCceeeecccccchhhcccccchhhHhhcc-----------ccccc
Confidence 444555543333 233221 2567789999999988887653 45555544322211111 12356
Q ss_pred CeEEEccCceEEEEeCCCCeEEEEeCCCCCCccceeEEEEecCCCCCCCCeEEEeCCCeEEEEeCC
Q 020019 204 NGIVYHPDGFLIVIHTFSGNLFKIDIVDGVGEGEEIKLIRVAGGPLSFGDGLELLSPTKLVVAGNP 269 (332)
Q Consensus 204 nGi~~~~dG~Lyva~~~~~~i~~id~~~~~~~~~~~~~v~~~g~~~~~pdGi~~~~dG~l~va~~~ 269 (332)
.+|+|.+||.|..+-....-=..+|+.++. .+. -+.| .....-+++++|+|-...++..
T Consensus 307 ~~iaf~~DGSL~~tGGlD~~~RvWDlRtgr----~im--~L~g-H~k~I~~V~fsPNGy~lATgs~ 365 (459)
T KOG0272|consen 307 FSIAFQPDGSLAATGGLDSLGRVWDLRTGR----CIM--FLAG-HIKEILSVAFSPNGYHLATGSS 365 (459)
T ss_pred ceeEecCCCceeeccCccchhheeecccCc----EEE--Eecc-cccceeeEeECCCceEEeecCC
Confidence 799999999888776544322235777762 232 2332 5566779999999999888643
|
|
| >KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown] | Back alignment and domain information |
|---|
Probab=97.07 E-value=0.082 Score=50.74 Aligned_cols=212 Identities=13% Similarity=0.108 Sum_probs=118.7
Q ss_pred eEEEecCCccccceEEcCCCCEEEEEecCCeEEEEECCCCCCCccceeeeEEecccCcCCCccceEEEeCCCCeEEEEEe
Q 020019 37 VYHYHSSSFFRECAKWDDSGRRFIVSFLDGGIGQVAVPDDYPPGTVLEEVTLVKDLELTGNGSLGLVLDHPRNRLLVVAA 116 (332)
Q Consensus 37 ~i~~~~~~~~pegia~d~~g~~~~~~~~~g~I~~vd~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~vd~~~g~l~v~~~ 116 (332)
-|.+.....-...+++|+.|..|++...+-.|.-||..+-... +...+.+ .|. .+...+.+.+.+..+.+.++.+
T Consensus 160 Ei~l~hgtk~Vsal~~Dp~GaR~~sGs~Dy~v~~wDf~gMdas--~~~fr~l--~P~-E~h~i~sl~ys~Tg~~iLvvsg 234 (641)
T KOG0772|consen 160 EIQLKHGTKIVSALAVDPSGARFVSGSLDYTVKFWDFQGMDAS--MRSFRQL--QPC-ETHQINSLQYSVTGDQILVVSG 234 (641)
T ss_pred eEeccCCceEEEEeeecCCCceeeeccccceEEEEeccccccc--chhhhcc--Ccc-cccccceeeecCCCCeEEEEec
Confidence 3444333334556899999999998866778888887643321 1110011 122 1224577888886445555554
Q ss_pred CcCCCccceEEEEECCCCcEEEEE-------ecCCCCCCCCCccceEECCCC-cEEEEeCCCCe--EEEEcCCCceEEEe
Q 020019 117 DVFGNKYSAVAAYDLSTWNRLFLT-------QLSGPSDGKSCADDVTVDAEG-NAYVTDVTGSK--IWKVGVKGEFLSII 186 (332)
Q Consensus 117 ~~~~~~~~~l~~~d~~~g~~~~~~-------~l~~~~~~~~~~ndiavd~dG-~lyvtd~~~~~--I~~v~~~g~~~~~~ 186 (332)
. +...+||-...+..... ++..-..-....++..+.|+. +.|+|.+..+. ||-++..-+.+.++
T Consensus 235 ~------aqakl~DRdG~~~~e~~KGDQYI~Dm~nTKGHia~lt~g~whP~~k~~FlT~s~DgtlRiWdv~~~k~q~qVi 308 (641)
T KOG0772|consen 235 S------AQAKLLDRDGFEIVEFSKGDQYIRDMYNTKGHIAELTCGCWHPDNKEEFLTCSYDGTLRIWDVNNTKSQLQVI 308 (641)
T ss_pred C------cceeEEccCCceeeeeeccchhhhhhhccCCceeeeeccccccCcccceEEecCCCcEEEEecCCchhheeEE
Confidence 2 34455665432322211 111100012456778888985 58888887664 55554332333333
Q ss_pred cCCCCCCcccccCccccCeEEEccCceEEEEeCCCCeEEEEeCCCCCCccceeEEEEecCCCCC--CCCeEEEeCCCeEE
Q 020019 187 SSPLFTPKEWYKNLVGLNGIVYHPDGFLIVIHTFSGNLFKIDIVDGVGEGEEIKLIRVAGGPLS--FGDGLELLSPTKLV 264 (332)
Q Consensus 187 ~~~~~~~p~~~~~~~~~nGi~~~~dG~Lyva~~~~~~i~~id~~~~~~~~~~~~~v~~~g~~~~--~pdGi~~~~dG~l~ 264 (332)
.. .... .....+.-.+|++||.++.+--..|.|..++...-.. .+...+. .++.+ ....|.|..||+.+
T Consensus 309 k~-k~~~----g~Rv~~tsC~~nrdg~~iAagc~DGSIQ~W~~~~~~v--~p~~~vk--~AH~~g~~Itsi~FS~dg~~L 379 (641)
T KOG0772|consen 309 KT-KPAG----GKRVPVTSCAWNRDGKLIAAGCLDGSIQIWDKGSRTV--RPVMKVK--DAHLPGQDITSISFSYDGNYL 379 (641)
T ss_pred ee-ccCC----CcccCceeeecCCCcchhhhcccCCceeeeecCCccc--ccceEee--eccCCCCceeEEEeccccchh
Confidence 21 1111 1234578899999998888888889998887653211 1222222 12223 46689999999998
Q ss_pred EEeC
Q 020019 265 VAGN 268 (332)
Q Consensus 265 va~~ 268 (332)
.+..
T Consensus 380 lSRg 383 (641)
T KOG0772|consen 380 LSRG 383 (641)
T ss_pred hhcc
Confidence 8864
|
|
| >PF05787 DUF839: Bacterial protein of unknown function (DUF839); InterPro: IPR008557 This family consists of bacterial proteins of unknown function | Back alignment and domain information |
|---|
Probab=97.06 E-value=0.0052 Score=60.73 Aligned_cols=70 Identities=17% Similarity=0.206 Sum_probs=48.8
Q ss_pred CccccCeEEEccCc-eEEEEeCCCC-------------------eEEEEeCCCCCCccc--eeEEEEecC----------
Q 020019 199 NLVGLNGIVYHPDG-FLIVIHTFSG-------------------NLFKIDIVDGVGEGE--EIKLIRVAG---------- 246 (332)
Q Consensus 199 ~~~~~nGi~~~~dG-~Lyva~~~~~-------------------~i~~id~~~~~~~~~--~~~~v~~~g---------- 246 (332)
.+..|-||+++|.. .+|++.+.++ +|+|++++....... ....+...|
T Consensus 348 ~f~RpEgi~~~p~~g~vY~a~T~~~~r~~~~~~~~n~~~~n~~G~I~r~~~~~~d~~~~~f~~~~~~~~g~~~~~~~~~~ 427 (524)
T PF05787_consen 348 PFDRPEGITVNPDDGEVYFALTNNSGRGESDVDAANPRAGNGYGQIYRYDPDGNDHAATTFTWELFLVGGDPTDASGNGS 427 (524)
T ss_pred cccCccCeeEeCCCCEEEEEEecCCCCcccccccCCcccCCcccEEEEecccCCccccceeEEEEEEEecCccccccccc
Confidence 35678899999986 9999987655 899999875411111 111222211
Q ss_pred -----CCCCCCCeEEEeCCCeEEEEeC
Q 020019 247 -----GPLSFGDGLELLSPTKLVVAGN 268 (332)
Q Consensus 247 -----~~~~~pdGi~~~~dG~l~va~~ 268 (332)
..+..||+|+++++|+||+++.
T Consensus 428 ~~~~~~~f~sPDNL~~d~~G~LwI~eD 454 (524)
T PF05787_consen 428 NKCDDNGFASPDNLAFDPDGNLWIQED 454 (524)
T ss_pred CcccCCCcCCCCceEECCCCCEEEEeC
Confidence 2367899999999999999963
|
|
| >PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea | Back alignment and domain information |
|---|
Probab=97.06 E-value=0.11 Score=49.52 Aligned_cols=210 Identities=19% Similarity=0.141 Sum_probs=102.2
Q ss_pred cccceEEcCCCCEEEEEec------CCeEEEEECCCCCCCccceeeeEEecccCcCCCccceEEEeCCCCeEEEEEeCcC
Q 020019 46 FRECAKWDDSGRRFIVSFL------DGGIGQVAVPDDYPPGTVLEEVTLVKDLELTGNGSLGLVLDHPRNRLLVVAADVF 119 (332)
Q Consensus 46 ~pegia~d~~g~~~~~~~~------~g~I~~vd~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~vd~~~g~l~v~~~~~~ 119 (332)
.|+-+---++|+++++.+. .|.+..+|.++.+ +.. .|.. +.....-.+.+-..+. .++.|+.....
T Consensus 131 ~PHT~Hclp~G~imIS~lGd~~G~g~Ggf~llD~~tf~----v~g--~We~-~~~~~~~gYDfw~qpr-~nvMiSSeWg~ 202 (461)
T PF05694_consen 131 RPHTVHCLPDGRIMISALGDADGNGPGGFVLLDGETFE----VKG--RWEK-DRGPQPFGYDFWYQPR-HNVMISSEWGA 202 (461)
T ss_dssp EEEEEEE-SS--EEEEEEEETTS-S--EEEEE-TTT------EEE--E--S-B-TT------EEEETT-TTEEEE-B---
T ss_pred CCceeeecCCccEEEEeccCCCCCCCCcEEEEcCcccc----ccc--eecc-CCCCCCCCCCeEEcCC-CCEEEEeccCC
Confidence 7777778899999988743 2568888866443 222 3432 1111113467888885 55566654321
Q ss_pred C---------------CccceEEEEECCCCcEEEEEecCCCCCCCCCccceEE--CCCCc-EEEEeCCCCeEEEEcC--C
Q 020019 120 G---------------NKYSAVAAYDLSTWNRLFLTQLSGPSDGKSCADDVTV--DAEGN-AYVTDVTGSKIWKVGV--K 179 (332)
Q Consensus 120 ~---------------~~~~~l~~~d~~~g~~~~~~~l~~~~~~~~~~ndiav--d~dG~-lyvtd~~~~~I~~v~~--~ 179 (332)
+ .=...|.+||.++.+.++.+++. .....|-.+.+ +|+.+ -|++......||++-. +
T Consensus 203 P~~~~~Gf~~~d~~~~~yG~~l~vWD~~~r~~~Q~idLg---~~g~~pLEvRflH~P~~~~gFvg~aLss~i~~~~k~~~ 279 (461)
T PF05694_consen 203 PSMFEKGFNPEDLEAGKYGHSLHVWDWSTRKLLQTIDLG---EEGQMPLEVRFLHDPDANYGFVGCALSSSIWRFYKDDD 279 (461)
T ss_dssp HHHHTT---TTTHHHH-S--EEEEEETTTTEEEEEEES----TTEEEEEEEEE-SSTT--EEEEEEE--EEEEEEEE-ET
T ss_pred hhhcccCCChhHhhcccccCeEEEEECCCCcEeeEEecC---CCCCceEEEEecCCCCccceEEEEeccceEEEEEEcCC
Confidence 0 01247999999999999999983 22234444544 55543 6888888889988754 3
Q ss_pred Cc--eEEEecCCCCC-----Ccccc----cCccccCeEEEccCc-eEEEEeCCCCeEEEEeCCCCCCccceeEEEEecC-
Q 020019 180 GE--FLSIISSPLFT-----PKEWY----KNLVGLNGIVYHPDG-FLIVIHTFSGNLFKIDIVDGVGEGEEIKLIRVAG- 246 (332)
Q Consensus 180 g~--~~~~~~~~~~~-----~p~~~----~~~~~~nGi~~~~dG-~Lyva~~~~~~i~~id~~~~~~~~~~~~~v~~~g- 246 (332)
|+ +..++.-+..+ -|... ....-+..|.++-|. .|||+++..|.|.++|.+++.. ...+-.+.+.|
T Consensus 280 g~W~a~kVi~ip~~~v~~~~lp~ml~~~~~~P~LitDI~iSlDDrfLYvs~W~~GdvrqYDISDP~~-Pkl~gqv~lGG~ 358 (461)
T PF05694_consen 280 GEWAAEKVIDIPAKKVEGWILPEMLKPFGAVPPLITDILISLDDRFLYVSNWLHGDVRQYDISDPFN-PKLVGQVFLGGS 358 (461)
T ss_dssp TEEEEEEEEEE--EE--SS---GGGGGG-EE------EEE-TTS-EEEEEETTTTEEEEEE-SSTTS--EEEEEEE-BTT
T ss_pred CCeeeeEEEECCCcccCcccccccccccccCCCceEeEEEccCCCEEEEEcccCCcEEEEecCCCCC-CcEEeEEEECcE
Confidence 43 22222111100 01000 001236788899998 9999999999999999986421 01233333332
Q ss_pred -----------CCC-CCCCeEEEeCCCe-EEEEe
Q 020019 247 -----------GPL-SFGDGLELLSPTK-LVVAG 267 (332)
Q Consensus 247 -----------~~~-~~pdGi~~~~dG~-l~va~ 267 (332)
..+ ++|.=|.+.-||+ |||++
T Consensus 359 ~~~~~~~~v~g~~l~GgPqMvqlS~DGkRlYvTn 392 (461)
T PF05694_consen 359 IRKGDHPVVKGKRLRGGPQMVQLSLDGKRLYVTN 392 (461)
T ss_dssp TT-B--TTS------S----EEE-TTSSEEEEE-
T ss_pred eccCCCccccccccCCCCCeEEEccCCeEEEEEe
Confidence 122 3678888888865 99997
|
The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A. |
| >KOG0282 consensus mRNA splicing factor [Function unknown] | Back alignment and domain information |
|---|
Probab=97.04 E-value=0.01 Score=56.15 Aligned_cols=195 Identities=15% Similarity=0.087 Sum_probs=123.9
Q ss_pred eEEEecCCccccceEEcC-CCCEEEEEecCCeEEEEECCC-CCCCccceeeeEEecccCcCCCccceEEEeCCCCeEEEE
Q 020019 37 VYHYHSSSFFRECAKWDD-SGRRFIVSFLDGGIGQVAVPD-DYPPGTVLEEVTLVKDLELTGNGSLGLVLDHPRNRLLVV 114 (332)
Q Consensus 37 ~i~~~~~~~~pegia~d~-~g~~~~~~~~~g~I~~vd~~~-~~~~~~~~~~~~~~~~~~~~~~~~~gi~vd~~~g~l~v~ 114 (332)
++.+.+..-....+-|-| .+.|+++..-++.|+.++.-+ +.. + +++...- ..+..+....+ |+=+.+
T Consensus 207 ~~~~~gH~kgvsai~~fp~~~hLlLS~gmD~~vklW~vy~~~~~----l--rtf~gH~----k~Vrd~~~s~~-g~~fLS 275 (503)
T KOG0282|consen 207 SHNLSGHTKGVSAIQWFPKKGHLLLSGGMDGLVKLWNVYDDRRC----L--RTFKGHR----KPVRDASFNNC-GTSFLS 275 (503)
T ss_pred eeeccCCccccchhhhccceeeEEEecCCCceEEEEEEecCcce----e--hhhhcch----hhhhhhhcccc-CCeeee
Confidence 344444333334455666 677887776678887776544 321 1 1333111 24567788775 765555
Q ss_pred EeCcCCCccceEEEEECCCCcEEEEEecCCCCCCCCCccceEECCCC-cEEEEeCCCCeEEEEcCC-CceEEEecCCCCC
Q 020019 115 AADVFGNKYSAVAAYDLSTWNRLFLTQLSGPSDGKSCADDVTVDAEG-NAYVTDVTGSKIWKVGVK-GEFLSIISSPLFT 192 (332)
Q Consensus 115 ~~~~~~~~~~~l~~~d~~~g~~~~~~~l~~~~~~~~~~ndiavd~dG-~lyvtd~~~~~I~~v~~~-g~~~~~~~~~~~~ 192 (332)
..- ...|..||.++|+......+ ...|+.+-+.|++ +++++-...+.|..+|.. |++.+-+..
T Consensus 276 ~sf-----D~~lKlwDtETG~~~~~f~~------~~~~~cvkf~pd~~n~fl~G~sd~ki~~wDiRs~kvvqeYd~---- 340 (503)
T KOG0282|consen 276 ASF-----DRFLKLWDTETGQVLSRFHL------DKVPTCVKFHPDNQNIFLVGGSDKKIRQWDIRSGKVVQEYDR---- 340 (503)
T ss_pred eec-----ceeeeeeccccceEEEEEec------CCCceeeecCCCCCcEEEEecCCCcEEEEeccchHHHHHHHh----
Confidence 432 24577899999999877765 3567788999997 899999889999999975 554332221
Q ss_pred CcccccCccccCeEEEccCceEEEEeCCCCeEEEEeCCCCCCccceeEEEEecCCCCCCCCeEEEeCCCeEEEEeCC
Q 020019 193 PKEWYKNLVGLNGIVYHPDGFLIVIHTFSGNLFKIDIVDGVGEGEEIKLIRVAGGPLSFGDGLELLSPTKLVVAGNP 269 (332)
Q Consensus 193 ~p~~~~~~~~~nGi~~~~dG~Lyva~~~~~~i~~id~~~~~~~~~~~~~v~~~g~~~~~pdGi~~~~dG~l~va~~~ 269 (332)
.+...+-|.|-++|.-+|+.+....+..++-..+. .++.+.-. ....-| .+.+.|+|..+.+.+.
T Consensus 341 ------hLg~i~~i~F~~~g~rFissSDdks~riWe~~~~v----~ik~i~~~-~~hsmP-~~~~~P~~~~~~aQs~ 405 (503)
T KOG0282|consen 341 ------HLGAILDITFVDEGRRFISSSDDKSVRIWENRIPV----PIKNIADP-EMHTMP-CLTLHPNGKWFAAQSM 405 (503)
T ss_pred ------hhhheeeeEEccCCceEeeeccCccEEEEEcCCCc----cchhhcch-hhccCc-ceecCCCCCeehhhcc
Confidence 22346789999999888888877766555555441 23333222 122344 5888899998888643
|
|
| >COG3211 PhoX Predicted phosphatase [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.04 E-value=0.01 Score=57.61 Aligned_cols=116 Identities=16% Similarity=0.250 Sum_probs=71.0
Q ss_pred ccceEEEeCCCCeEEEEEeCcC-----------CCccceEEEEECCCC-------cEEEEEecCCCCC--C---------
Q 020019 98 GSLGLVLDHPRNRLLVVAADVF-----------GNKYSAVAAYDLSTW-------NRLFLTQLSGPSD--G--------- 148 (332)
Q Consensus 98 ~~~gi~vd~~~g~l~v~~~~~~-----------~~~~~~l~~~d~~~g-------~~~~~~~l~~~~~--~--------- 148 (332)
.|.+|++++..+.+|++..... .+..+.|++|-+.++ +...+..-..|.. .
T Consensus 418 RpE~i~~~p~~g~Vy~~lTNn~~r~~~~aNpr~~n~~G~I~r~~p~~~d~t~~~ftWdlF~~aG~~~~~~~~~~~~~~~~ 497 (616)
T COG3211 418 RPEWIAVNPGTGEVYFTLTNNGKRSDDAANPRAKNGYGQIVRWIPATGDHTDTKFTWDLFVEAGNPSVLEGGASANINAN 497 (616)
T ss_pred CccceeecCCcceEEEEeCCCCccccccCCCcccccccceEEEecCCCCccCccceeeeeeecCCccccccccccCcccc
Confidence 5789999998889999976533 134578999987765 2222222111111 1
Q ss_pred -CCCccceEECCCCcEEEEeCCC-----C---eEE-EEcCC---CceEEEecCCCCCCcccccCccccCeEEEccCc-eE
Q 020019 149 -KSCADDVTVDAEGNAYVTDVTG-----S---KIW-KVGVK---GEFLSIISSPLFTPKEWYKNLVGLNGIVYHPDG-FL 214 (332)
Q Consensus 149 -~~~~ndiavd~dG~lyvtd~~~-----~---~I~-~v~~~---g~~~~~~~~~~~~~p~~~~~~~~~nGi~~~~dG-~L 214 (332)
-..|.+|++|+.|+|||..-++ + .++ ...++ |+..+++..+. ..-..|.||+||| +|
T Consensus 498 ~f~~PDnl~fD~~GrLWi~TDg~~s~~~~~~~G~~~m~~~~p~~g~~~rf~t~P~---------g~E~tG~~FspD~~Tl 568 (616)
T COG3211 498 WFNSPDNLAFDPWGRLWIQTDGSGSTLRNRFRGVTQMLTPDPKTGTIKRFLTGPI---------GCEFTGPCFSPDGKTL 568 (616)
T ss_pred cccCCCceEECCCCCEEEEecCCCCccCcccccccccccCCCccceeeeeccCCC---------cceeecceeCCCCceE
Confidence 1349999999999999864322 1 222 22233 33444433221 2345799999999 99
Q ss_pred EEEeCCCC
Q 020019 215 IVIHTFSG 222 (332)
Q Consensus 215 yva~~~~~ 222 (332)
||.-..-+
T Consensus 569 FV~vQHPG 576 (616)
T COG3211 569 FVNVQHPG 576 (616)
T ss_pred EEEecCCC
Confidence 99866543
|
|
| >COG3211 PhoX Predicted phosphatase [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.01 E-value=0.0065 Score=58.97 Aligned_cols=111 Identities=16% Similarity=0.153 Sum_probs=72.0
Q ss_pred CccccCeEEEccCc-eEEEEeCCCC----------------eEEEEeCCCCCCccce--eEEEEecC-------------
Q 020019 199 NLVGLNGIVYHPDG-FLIVIHTFSG----------------NLFKIDIVDGVGEGEE--IKLIRVAG------------- 246 (332)
Q Consensus 199 ~~~~~nGi~~~~dG-~Lyva~~~~~----------------~i~~id~~~~~~~~~~--~~~v~~~g------------- 246 (332)
.+..|-+|++.|.- .+|++.++++ +|+|+-+.++.-+++. -..+...|
T Consensus 415 ~mdRpE~i~~~p~~g~Vy~~lTNn~~r~~~~aNpr~~n~~G~I~r~~p~~~d~t~~~ftWdlF~~aG~~~~~~~~~~~~~ 494 (616)
T COG3211 415 PMDRPEWIAVNPGTGEVYFTLTNNGKRSDDAANPRAKNGYGQIVRWIPATGDHTDTKFTWDLFVEAGNPSVLEGGASANI 494 (616)
T ss_pred cccCccceeecCCcceEEEEeCCCCccccccCCCcccccccceEEEecCCCCccCccceeeeeeecCCccccccccccCc
Confidence 34578899999885 9999988654 6888877754111111 11111111
Q ss_pred --CCCCCCCeEEEeCCCeEEEEeCCc-----e-----EEEEcCCCceEEEEEeeecCCCcccceEEEE--ECCeEEEE
Q 020019 247 --GPLSFGDGLELLSPTKLVVAGNPS-----A-----RLVESSDGWETAAVVAKFSGPVHRLATAATV--KDGRVYLN 310 (332)
Q Consensus 247 --~~~~~pdGi~~~~dG~l~va~~~~-----~-----~~v~~~dg~~~~~~~~~~~~~~~~~pt~va~--~~g~lyv~ 310 (332)
..+..||+|++|+.|+||++...+ . ..+..+++ +++++...+..|..-.-++.+| ++++|||+
T Consensus 495 ~~~~f~~PDnl~fD~~GrLWi~TDg~~s~~~~~~~G~~~m~~~~p-~~g~~~rf~t~P~g~E~tG~~FspD~~TlFV~ 571 (616)
T COG3211 495 NANWFNSPDNLAFDPWGRLWIQTDGSGSTLRNRFRGVTQMLTPDP-KTGTIKRFLTGPIGCEFTGPCFSPDGKTLFVN 571 (616)
T ss_pred ccccccCCCceEECCCCCEEEEecCCCCccCcccccccccccCCC-ccceeeeeccCCCcceeecceeCCCCceEEEE
Confidence 114459999999999999996321 1 22445666 7778887776654344577888 56799983
|
|
| >PF01731 Arylesterase: Arylesterase; InterPro: IPR002640 The serum paraoxonases/arylesterases are enzymes that catalyse the hydrolysis of the toxic metabolites of a variety of organophosphorus insecticides | Back alignment and domain information |
|---|
Probab=96.99 E-value=0.008 Score=44.26 Aligned_cols=32 Identities=22% Similarity=0.325 Sum_probs=27.1
Q ss_pred CccccCeEEEccCc-eEEEEeCCCCeEEEEeCC
Q 020019 199 NLVGLNGIVYHPDG-FLIVIHTFSGNLFKIDIV 230 (332)
Q Consensus 199 ~~~~~nGi~~~~dG-~Lyva~~~~~~i~~id~~ 230 (332)
++..||||++++|+ .|||++...+.|+.+...
T Consensus 52 g~~~aNGI~~s~~~k~lyVa~~~~~~I~vy~~~ 84 (86)
T PF01731_consen 52 GFSFANGIAISPDKKYLYVASSLAHSIHVYKRH 84 (86)
T ss_pred cCCCCceEEEcCCCCEEEEEeccCCeEEEEEec
Confidence 34678999999999 999999999998776543
|
The enzymes hydrolyse a broad spectrum of organophosphate substrates, including paraoxon and a number of aromatic carboxylic acid esters (e.g., phenyl acetate), and hence confer resistance to organophosphate toxicity []. Mammals have 3 distinct paraoxonase types, termed PON1-3 [, ]. In mice and humans, the PON genes are found on the same chromosome in close proximity. PON activity has been found in variety of tissues, with highest levels in liver and serum - the source of serum PON is thought to be the liver. Unlike mammals, fish and avian species lack paraoxonase activity. Human and rabbit PONs appear to have two distinct Ca2+ binding sites, one required for stability and one required for catalytic activity. The Ca2+ dependency of PONs suggests a mechanism of hydrolysis where Ca2+ acts as the electrophillic catalyst, like that proposed for phospholipase A2. The paraoxonase enzymes, PON1 and PON3, are high density lipoprotein (HDL)- associated proteins capable of preventing oxidative modification of low density lipoproteins (LPL) []. Although PON2 has oxidative properties, the enzyme does not associate with HDL. Within a given species, PON1, PON2 and PON3 share ~60% amino acid sequence identity, whereas between mammalian species particular PONs (1,2 or 3) share 79-90% identity at the amino acid level. Human PON1 and PON3 share numerous conserved phosphorylation and N-glycosylation sites; however, it is not known whether the PON proteins are modified at these sites, or whether modification at these sites is required for activity in vivo []. This family consists of arylesterases (Also known as serum paraoxonase) 3.1.1.2 from EC. These enzymes hydrolyse organophosphorus esters such as paraoxon and are found in the liver and blood. They confer resistance to organophosphate toxicity []. Human arylesterase (PON1) P27169 from SWISSPROT is associated with HDL and may protect against LDL oxidation [].; GO: 0004064 arylesterase activity |
| >KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=96.89 E-value=0.12 Score=47.61 Aligned_cols=170 Identities=14% Similarity=0.182 Sum_probs=103.0
Q ss_pred ceeEEEecC-----Cccccce-EEcCCCCEEEEEecCCeEEEEECCCCCCCccceeeeEEecccCcCCCccce-EEEeCC
Q 020019 35 THVYHYHSS-----SFFRECA-KWDDSGRRFIVSFLDGGIGQVAVPDDYPPGTVLEEVTLVKDLELTGNGSLG-LVLDHP 107 (332)
Q Consensus 35 ~~~i~~~~~-----~~~pegi-a~d~~g~~~~~~~~~g~I~~vd~~~~~~~~~~~~~~~~~~~~~~~~~~~~g-i~vd~~ 107 (332)
...+++... -.+|..| ++-=..+.+++.+. ..||..|..+-+. ++ +...-|. .+.| +++.++
T Consensus 70 Lkv~~~Kk~~~ICe~~fpt~IL~VrmNr~RLvV~Le-e~IyIydI~~Mkl----Lh--TI~t~~~----n~~gl~AlS~n 138 (391)
T KOG2110|consen 70 LKVVHFKKKTTICEIFFPTSILAVRMNRKRLVVCLE-ESIYIYDIKDMKL----LH--TIETTPP----NPKGLCALSPN 138 (391)
T ss_pred EEEEEcccCceEEEEecCCceEEEEEccceEEEEEc-ccEEEEeccccee----eh--hhhccCC----CccceEeeccC
Confidence 556666532 2366554 34434455666653 4599999876552 23 2211111 3343 334444
Q ss_pred CCeEEEEEeCcCCCccceEEEEECCCCcEEEEEecCCCCCCCCCccceEECCCCcEEEEeCCCCeEEEE-c-CCCceEEE
Q 020019 108 RNRLLVVAADVFGNKYSAVAAYDLSTWNRLFLTQLSGPSDGKSCADDVTVDAEGNAYVTDVTGSKIWKV-G-VKGEFLSI 185 (332)
Q Consensus 108 ~g~l~v~~~~~~~~~~~~l~~~d~~~g~~~~~~~l~~~~~~~~~~ndiavd~dG~lyvtd~~~~~I~~v-~-~~g~~~~~ 185 (332)
.+.-|++..+.. ..+.|..||..+-+....+.- . ......++++++|.+..|.+..|.|.|+ . ++|+...-
T Consensus 139 ~~n~ylAyp~s~--t~GdV~l~d~~nl~~v~~I~a---H--~~~lAalafs~~G~llATASeKGTVIRVf~v~~G~kl~e 211 (391)
T KOG2110|consen 139 NANCYLAYPGST--TSGDVVLFDTINLQPVNTINA---H--KGPLAALAFSPDGTLLATASEKGTVIRVFSVPEGQKLYE 211 (391)
T ss_pred CCCceEEecCCC--CCceEEEEEcccceeeeEEEe---c--CCceeEEEECCCCCEEEEeccCceEEEEEEcCCccEeee
Confidence 455687765422 356799999987666655543 1 2455679999999999999999988774 3 55654322
Q ss_pred ecCCCCCCcccccCccccCeEEEccCceEEEEeCCCCeEEEEeCC
Q 020019 186 ISSPLFTPKEWYKNLVGLNGIVYHPDGFLIVIHTFSGNLFKIDIV 230 (332)
Q Consensus 186 ~~~~~~~~p~~~~~~~~~nGi~~~~dG~Lyva~~~~~~i~~id~~ 230 (332)
+.-... | ...-.|+|++|+.+..+...+.+|..|.++
T Consensus 212 FRRG~~--~------~~IySL~Fs~ds~~L~~sS~TeTVHiFKL~ 248 (391)
T KOG2110|consen 212 FRRGTY--P------VSIYSLSFSPDSQFLAASSNTETVHIFKLE 248 (391)
T ss_pred eeCCce--e------eEEEEEEECCCCCeEEEecCCCeEEEEEec
Confidence 222111 2 345789999999766667778887666555
|
|
| >COG3292 Predicted periplasmic ligand-binding sensor domain [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=96.87 E-value=0.039 Score=53.69 Aligned_cols=150 Identities=19% Similarity=0.212 Sum_probs=87.2
Q ss_pred cceEEcCCCCEEEEEecCCeEEEEECCCCCCCccceeeeEEecccCcCCCccceEEEeCCCCeEEEEEeCcCCCccceEE
Q 020019 48 ECAKWDDSGRRFIVSFLDGGIGQVAVPDDYPPGTVLEEVTLVKDLELTGNGSLGLVLDHPRNRLLVVAADVFGNKYSAVA 127 (332)
Q Consensus 48 egia~d~~g~~~~~~~~~g~I~~vd~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~vd~~~g~l~v~~~~~~~~~~~~l~ 127 (332)
..+.+|.+|++|++. ...+++++..+++. . ...+.| . ....+.+..|-. |+|||... ..++
T Consensus 168 ~aLv~D~~g~lWvgT--~dGL~~fd~~~gka----l---ql~s~~-~-dk~I~al~~d~q-g~LWVGTd-------qGv~ 228 (671)
T COG3292 168 VALVFDANGRLWVGT--PDGLSYFDAGRGKA----L---QLASPP-L-DKAINALIADVQ-GRLWVGTD-------QGVY 228 (671)
T ss_pred eeeeeeccCcEEEec--CCcceEEccccceE----E---EcCCCc-c-hhhHHHHHHHhc-CcEEEEec-------cceE
Confidence 457888888877755 35688998877652 1 222111 1 124567777874 99999974 3477
Q ss_pred EEECCCCcEEEEEecCCCCCCCCCccceEECCCCcEEEEeCCCCeEEEEcCCCceEEEecCCCCCCcccccCccccCeEE
Q 020019 128 AYDLSTWNRLFLTQLSGPSDGKSCADDVTVDAEGNAYVTDVTGSKIWKVGVKGEFLSIISSPLFTPKEWYKNLVGLNGIV 207 (332)
Q Consensus 128 ~~d~~~g~~~~~~~l~~~~~~~~~~ndiavd~dG~lyvtd~~~~~I~~v~~~g~~~~~~~~~~~~~p~~~~~~~~~nGi~ 207 (332)
.++.++.+. .--++.-+....+-+..|.+|.+||.....-.+++. ++.. ..+...+. .......|++.
T Consensus 229 ~~e~~G~~~----sn~~~~lp~~~I~ll~qD~qG~lWiGTenGl~r~~l-~rq~-Lq~~~~~~------~l~~S~vnsL~ 296 (671)
T COG3292 229 LQEAEGWRA----SNWGPMLPSGNILLLVQDAQGELWIGTENGLWRTRL-PRQG-LQIPLSKM------HLGVSTVNSLW 296 (671)
T ss_pred EEchhhccc----cccCCCCcchheeeeecccCCCEEEeecccceeEec-CCCC-cccccccc------CCcccccccee
Confidence 777764221 110111112345557778899999986433233333 3322 12111111 12345679999
Q ss_pred EccCceEEEEeCCCCeEEEEeCC
Q 020019 208 YHPDGFLIVIHTFSGNLFKIDIV 230 (332)
Q Consensus 208 ~~~dG~Lyva~~~~~~i~~id~~ 230 (332)
.|.||.||+... +.|+++...
T Consensus 297 ~D~dGsLWv~t~--~giv~~~~a 317 (671)
T COG3292 297 LDTDGSLWVGTY--GGIVRYLTA 317 (671)
T ss_pred eccCCCEeeecc--CceEEEecc
Confidence 999999999764 457777655
|
|
| >PLN00181 protein SPA1-RELATED; Provisional | Back alignment and domain information |
|---|
Probab=96.84 E-value=0.57 Score=49.04 Aligned_cols=186 Identities=11% Similarity=0.120 Sum_probs=105.9
Q ss_pred cceEEcCC-CCEEEEEecCCeEEEEECCCCCCCccceeeeEEecccCcCCCccceEEEeCCCCeEEEEEeCcCCCccceE
Q 020019 48 ECAKWDDS-GRRFIVSFLDGGIGQVAVPDDYPPGTVLEEVTLVKDLELTGNGSLGLVLDHPRNRLLVVAADVFGNKYSAV 126 (332)
Q Consensus 48 egia~d~~-g~~~~~~~~~g~I~~vd~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~vd~~~g~l~v~~~~~~~~~~~~l 126 (332)
.+++|.+. ++.+++...++.|..||..+++. .. .+.... ....++.+++.++.++++... .+.+
T Consensus 536 ~~l~~~~~~~~~las~~~Dg~v~lWd~~~~~~----~~--~~~~H~----~~V~~l~~~p~~~~~L~Sgs~-----Dg~v 600 (793)
T PLN00181 536 SGICWNSYIKSQVASSNFEGVVQVWDVARSQL----VT--EMKEHE----KRVWSIDYSSADPTLLASGSD-----DGSV 600 (793)
T ss_pred eeEEeccCCCCEEEEEeCCCeEEEEECCCCeE----EE--EecCCC----CCEEEEEEcCCCCCEEEEEcC-----CCEE
Confidence 35667664 55555556689999999775541 11 221111 257889998744665555432 3568
Q ss_pred EEEECCCCcEEEEEecCCCCCCCCCccceEEC-CCCcEEEEeCCCCeEEEEcCCC-c-eEEEecCCCCCCcccccCcccc
Q 020019 127 AAYDLSTWNRLFLTQLSGPSDGKSCADDVTVD-AEGNAYVTDVTGSKIWKVGVKG-E-FLSIISSPLFTPKEWYKNLVGL 203 (332)
Q Consensus 127 ~~~d~~~g~~~~~~~l~~~~~~~~~~ndiavd-~dG~lyvtd~~~~~I~~v~~~g-~-~~~~~~~~~~~~p~~~~~~~~~ 203 (332)
..||.++++....+.. ......+.+. ++|+.+++-+..+.|+.+|... + ....+.. .....
T Consensus 601 ~iWd~~~~~~~~~~~~------~~~v~~v~~~~~~g~~latgs~dg~I~iwD~~~~~~~~~~~~~----------h~~~V 664 (793)
T PLN00181 601 KLWSINQGVSIGTIKT------KANICCVQFPSESGRSLAFGSADHKVYYYDLRNPKLPLCTMIG----------HSKTV 664 (793)
T ss_pred EEEECCCCcEEEEEec------CCCeEEEEEeCCCCCEEEEEeCCCeEEEEECCCCCccceEecC----------CCCCE
Confidence 8999988776544332 1223446663 4688888888889999988752 2 1111110 11234
Q ss_pred CeEEEccCceEEEEeCCCCeEEEEeCCCCCC--ccceeEEEEecCCCCCCCCeEEEeCCCeEEEEeC
Q 020019 204 NGIVYHPDGFLIVIHTFSGNLFKIDIVDGVG--EGEEIKLIRVAGGPLSFGDGLELLSPTKLVVAGN 268 (332)
Q Consensus 204 nGi~~~~dG~Lyva~~~~~~i~~id~~~~~~--~~~~~~~v~~~g~~~~~pdGi~~~~dG~l~va~~ 268 (332)
..+.|. ++..+++-...+.|..+++..+.. ....+..+ .+ .......++++++|.++++..
T Consensus 665 ~~v~f~-~~~~lvs~s~D~~ikiWd~~~~~~~~~~~~l~~~--~g-h~~~i~~v~~s~~~~~lasgs 727 (793)
T PLN00181 665 SYVRFV-DSSTLVSSSTDNTLKLWDLSMSISGINETPLHSF--MG-HTNVKNFVGLSVSDGYIATGS 727 (793)
T ss_pred EEEEEe-CCCEEEEEECCCEEEEEeCCCCccccCCcceEEE--cC-CCCCeeEEEEcCCCCEEEEEe
Confidence 577886 564444555667777777753210 00122222 21 223445688888887777753
|
|
| >KOG2096 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.83 E-value=0.31 Score=44.28 Aligned_cols=213 Identities=15% Similarity=0.139 Sum_probs=112.2
Q ss_pred cccceEEcCCCCEEEEEec-CCeE--EEEECCC-CCCCccceeeeEEecccCcCCC-c--cceEEEeCCCCeEEEEEeCc
Q 020019 46 FRECAKWDDSGRRFIVSFL-DGGI--GQVAVPD-DYPPGTVLEEVTLVKDLELTGN-G--SLGLVLDHPRNRLLVVAADV 118 (332)
Q Consensus 46 ~pegia~d~~g~~~~~~~~-~g~I--~~vd~~~-~~~~~~~~~~~~~~~~~~~~~~-~--~~gi~vd~~~g~l~v~~~~~ 118 (332)
+|.-+++.||-+-+++... ...| |+.+..+ |..+ +..+.+ ..-.+... . ...+-+.. +-.|+....
T Consensus 134 hpT~V~FapDc~s~vv~~~~g~~l~vyk~~K~~dG~~~---~~~v~~-D~~~f~~kh~v~~i~iGiA~--~~k~imsas- 206 (420)
T KOG2096|consen 134 HPTRVVFAPDCKSVVVSVKRGNKLCVYKLVKKTDGSGS---HHFVHI-DNLEFERKHQVDIINIGIAG--NAKYIMSAS- 206 (420)
T ss_pred CceEEEECCCcceEEEEEccCCEEEEEEeeecccCCCC---cccccc-cccccchhcccceEEEeecC--CceEEEEec-
Confidence 7888999999988887744 3444 4544322 2211 010001 00111111 1 12233333 334655543
Q ss_pred CCCccceEEEEECCCCcEEEEEecCCCCCCCCCccceEECCCCcEEEEeCCCCeEEE----EcCCCceEEEecCCCCCCc
Q 020019 119 FGNKYSAVAAYDLSTWNRLFLTQLSGPSDGKSCADDVTVDAEGNAYVTDVTGSKIWK----VGVKGEFLSIISSPLFTPK 194 (332)
Q Consensus 119 ~~~~~~~l~~~d~~~g~~~~~~~l~~~~~~~~~~ndiavd~dG~lyvtd~~~~~I~~----v~~~g~~~~~~~~~~~~~p 194 (332)
....|..|+++ |+.+..++.. +....+.++.|+|++..+......|.+ +..+|++..+.. .|.-.
T Consensus 207 ---~dt~i~lw~lk-Gq~L~~idtn-----q~~n~~aavSP~GRFia~~gFTpDVkVwE~~f~kdG~fqev~r--vf~Lk 275 (420)
T KOG2096|consen 207 ---LDTKICLWDLK-GQLLQSIDTN-----QSSNYDAAVSPDGRFIAVSGFTPDVKVWEPIFTKDGTFQEVKR--VFSLK 275 (420)
T ss_pred ---CCCcEEEEecC-Cceeeeeccc-----cccccceeeCCCCcEEEEecCCCCceEEEEEeccCcchhhhhh--hheec
Confidence 24578899998 8887766542 356678999999998777665554433 556776543311 12111
Q ss_pred ccccCccccCeEEEccCceEEEEeCCCCeE--EEEeCCCCCC-ccceeEEEEec-CCCCCCCCeEEEeCCCeEEEEeCCc
Q 020019 195 EWYKNLVGLNGIVYHPDGFLIVIHTFSGNL--FKIDIVDGVG-EGEEIKLIRVA-GGPLSFGDGLELLSPTKLVVAGNPS 270 (332)
Q Consensus 195 ~~~~~~~~~nGi~~~~dG~Lyva~~~~~~i--~~id~~~~~~-~~~~~~~v~~~-g~~~~~pdGi~~~~dG~l~va~~~~ 270 (332)
....+..-.||+++.+-.++-+..|++ |-.|..-..- +....+....+ ....+.|--+++.|.|.++.+...+
T Consensus 276 ---GH~saV~~~aFsn~S~r~vtvSkDG~wriwdtdVrY~~~qDpk~Lk~g~~pl~aag~~p~RL~lsP~g~~lA~s~gs 352 (420)
T KOG2096|consen 276 ---GHQSAVLAAAFSNSSTRAVTVSKDGKWRIWDTDVRYEAGQDPKILKEGSAPLHAAGSEPVRLELSPSGDSLAVSFGS 352 (420)
T ss_pred ---cchhheeeeeeCCCcceeEEEecCCcEEEeeccceEecCCCchHhhcCCcchhhcCCCceEEEeCCCCcEEEeecCC
Confidence 123456678888887555555555544 3333321100 00111211111 0122467789999999988887554
Q ss_pred -eEEEEcCCC
Q 020019 271 -ARLVESSDG 279 (332)
Q Consensus 271 -~~~v~~~dg 279 (332)
..+.-..+|
T Consensus 353 ~l~~~~se~g 362 (420)
T KOG2096|consen 353 DLKVFASEDG 362 (420)
T ss_pred ceEEEEcccC
Confidence 333445556
|
|
| >KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown] | Back alignment and domain information |
|---|
Probab=96.81 E-value=0.11 Score=49.89 Aligned_cols=163 Identities=13% Similarity=0.179 Sum_probs=92.0
Q ss_pred ceEEcCCC-CEEEEEecCCeEEEEECCCCCCCccceeeeEEec-ccCcCC-CccceEEEeCCCCeEEEEEeCcCCCccce
Q 020019 49 CAKWDDSG-RRFIVSFLDGGIGQVAVPDDYPPGTVLEEVTLVK-DLELTG-NGSLGLVLDHPRNRLLVVAADVFGNKYSA 125 (332)
Q Consensus 49 gia~d~~g-~~~~~~~~~g~I~~vd~~~~~~~~~~~~~~~~~~-~~~~~~-~~~~gi~vd~~~g~l~v~~~~~~~~~~~~ 125 (332)
...|.|+. ..|++...+|++..|+..+.+. ++.++. .+.... ..+...+++++ |.++.+... .+.
T Consensus 273 ~g~whP~~k~~FlT~s~DgtlRiWdv~~~k~------q~qVik~k~~~g~Rv~~tsC~~nrd-g~~iAagc~-----DGS 340 (641)
T KOG0772|consen 273 CGCWHPDNKEEFLTCSYDGTLRIWDVNNTKS------QLQVIKTKPAGGKRVPVTSCAWNRD-GKLIAAGCL-----DGS 340 (641)
T ss_pred ccccccCcccceEEecCCCcEEEEecCCchh------heeEEeeccCCCcccCceeeecCCC-cchhhhccc-----CCc
Confidence 34566664 3566777788877777665543 123442 122111 25677889997 887555432 356
Q ss_pred EEEEECCCCcEEEEEecCCCCCCCCCccceEECCCCcEEEEeCCCCeEEEEcCC--CceEEEecCCCCCCcccccCcccc
Q 020019 126 VAAYDLSTWNRLFLTQLSGPSDGKSCADDVTVDAEGNAYVTDVTGSKIWKVGVK--GEFLSIISSPLFTPKEWYKNLVGL 203 (332)
Q Consensus 126 l~~~d~~~g~~~~~~~l~~~~~~~~~~ndiavd~dG~lyvtd~~~~~I~~v~~~--g~~~~~~~~~~~~~p~~~~~~~~~ 203 (332)
|..|+..+..+....-+.....++.-...|++..||+...+-...+.+-..|.. .+.+-.. ..+ +...--
T Consensus 341 IQ~W~~~~~~v~p~~~vk~AH~~g~~Itsi~FS~dg~~LlSRg~D~tLKvWDLrq~kkpL~~~--tgL------~t~~~~ 412 (641)
T KOG0772|consen 341 IQIWDKGSRTVRPVMKVKDAHLPGQDITSISFSYDGNYLLSRGFDDTLKVWDLRQFKKPLNVR--TGL------PTPFPG 412 (641)
T ss_pred eeeeecCCcccccceEeeeccCCCCceeEEEeccccchhhhccCCCceeeeeccccccchhhh--cCC------CccCCC
Confidence 888997443322222221112223456679999999988887776665555543 2222111 111 122334
Q ss_pred CeEEEccCceEEEEeCC------CCeEEEEeCCC
Q 020019 204 NGIVYHPDGFLIVIHTF------SGNLFKIDIVD 231 (332)
Q Consensus 204 nGi~~~~dG~Lyva~~~------~~~i~~id~~~ 231 (332)
...+|+||..|+++-+. .+.++.++..+
T Consensus 413 tdc~FSPd~kli~TGtS~~~~~~~g~L~f~d~~t 446 (641)
T KOG0772|consen 413 TDCCFSPDDKLILTGTSAPNGMTAGTLFFFDRMT 446 (641)
T ss_pred CccccCCCceEEEecccccCCCCCceEEEEeccc
Confidence 57889999988877552 45677776654
|
|
| >KOG1539 consensus WD repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.76 E-value=0.092 Score=53.08 Aligned_cols=183 Identities=16% Similarity=0.172 Sum_probs=111.4
Q ss_pred cccceEEcCCCCEEEEEecCCeEEEEECCCCCCCccceeeeEEecccCcCCCccceEEEeCCCCeEEEEEeCcCCCccce
Q 020019 46 FRECAKWDDSGRRFIVSFLDGGIGQVAVPDDYPPGTVLEEVTLVKDLELTGNGSLGLVLDHPRNRLLVVAADVFGNKYSA 125 (332)
Q Consensus 46 ~pegia~d~~g~~~~~~~~~g~I~~vd~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~vd~~~g~l~v~~~~~~~~~~~~ 125 (332)
..-.++++.=||.-+.....|.|-++..+.|-. +-.+-..|. -...+.|+++|.- |++.|+... .+-
T Consensus 450 ~~~av~vs~CGNF~~IG~S~G~Id~fNmQSGi~------r~sf~~~~a-h~~~V~gla~D~~-n~~~vsa~~-----~Gi 516 (910)
T KOG1539|consen 450 NATAVCVSFCGNFVFIGYSKGTIDRFNMQSGIH------RKSFGDSPA-HKGEVTGLAVDGT-NRLLVSAGA-----DGI 516 (910)
T ss_pred ceEEEEEeccCceEEEeccCCeEEEEEcccCee------ecccccCcc-ccCceeEEEecCC-CceEEEccC-----cce
Confidence 334577888899888777789999998887742 112321121 1125689999995 887877642 345
Q ss_pred EEEEECCCCcEEEEEecCCCCCCCCCccceEECCCCcEEEEeCCCCeEEEEcCCCc-eEE-EecCCCCCCcccccCcccc
Q 020019 126 VAAYDLSTWNRLFLTQLSGPSDGKSCADDVTVDAEGNAYVTDVTGSKIWKVGVKGE-FLS-IISSPLFTPKEWYKNLVGL 203 (332)
Q Consensus 126 l~~~d~~~g~~~~~~~l~~~~~~~~~~ndiavd~dG~lyvtd~~~~~I~~v~~~g~-~~~-~~~~~~~~~p~~~~~~~~~ 203 (332)
+..||.+...+....++. .....+.......+++..-..=.|..+|...+ ..+ +.. .....
T Consensus 517 lkfw~f~~k~l~~~l~l~------~~~~~iv~hr~s~l~a~~~ddf~I~vvD~~t~kvvR~f~g-----------h~nri 579 (910)
T KOG1539|consen 517 LKFWDFKKKVLKKSLRLG------SSITGIVYHRVSDLLAIALDDFSIRVVDVVTRKVVREFWG-----------HGNRI 579 (910)
T ss_pred EEEEecCCcceeeeeccC------CCcceeeeeehhhhhhhhcCceeEEEEEchhhhhhHHhhc-----------cccce
Confidence 677898876665555552 23344555554334444333445666665432 221 111 12357
Q ss_pred CeEEEccCc-eEEEEeCCCCeEEEEeCCCCCCccceeEEEEecCCCCCCCCeEEEeCCCeEEEEe
Q 020019 204 NGIVYHPDG-FLIVIHTFSGNLFKIDIVDGVGEGEEIKLIRVAGGPLSFGDGLELLSPTKLVVAG 267 (332)
Q Consensus 204 nGi~~~~dG-~Lyva~~~~~~i~~id~~~~~~~~~~~~~v~~~g~~~~~pdGi~~~~dG~l~va~ 267 (332)
|.++|+||| +|..+. ..++|..+|+.++. .+-.+.++ ..+-.|.+.|+|.+..+.
T Consensus 580 td~~FS~DgrWlisas-mD~tIr~wDlpt~~----lID~~~vd----~~~~sls~SPngD~LAT~ 635 (910)
T KOG1539|consen 580 TDMTFSPDGRWLISAS-MDSTIRTWDLPTGT----LIDGLLVD----SPCTSLSFSPNGDFLATV 635 (910)
T ss_pred eeeEeCCCCcEEEEee-cCCcEEEEeccCcc----eeeeEecC----CcceeeEECCCCCEEEEE
Confidence 899999999 555554 56789899998873 34334333 234567777887766663
|
|
| >PTZ00421 coronin; Provisional | Back alignment and domain information |
|---|
Probab=96.71 E-value=0.72 Score=45.50 Aligned_cols=158 Identities=11% Similarity=0.016 Sum_probs=93.3
Q ss_pred cccceEEcCCC-CEEEEEecCCeEEEEECCCCCCCccceeeeEEecccCcCCCccceEEEeCCCCeEEEEEeCcCCCccc
Q 020019 46 FRECAKWDDSG-RRFIVSFLDGGIGQVAVPDDYPPGTVLEEVTLVKDLELTGNGSLGLVLDHPRNRLLVVAADVFGNKYS 124 (332)
Q Consensus 46 ~pegia~d~~g-~~~~~~~~~g~I~~vd~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~vd~~~g~l~v~~~~~~~~~~~ 124 (332)
....++|+|++ +++++...++.|..+|..+++. .. .+.... .....+.++++ |.++++.. ..+
T Consensus 127 ~V~~l~f~P~~~~iLaSgs~DgtVrIWDl~tg~~----~~--~l~~h~----~~V~sla~spd-G~lLatgs-----~Dg 190 (493)
T PTZ00421 127 KVGIVSFHPSAMNVLASAGADMVVNVWDVERGKA----VE--VIKCHS----DQITSLEWNLD-GSLLCTTS-----KDK 190 (493)
T ss_pred cEEEEEeCcCCCCEEEEEeCCCEEEEEECCCCeE----EE--EEcCCC----CceEEEEEECC-CCEEEEec-----CCC
Confidence 34568899986 5666667789999999876652 11 221111 25688999996 77655543 245
Q ss_pred eEEEEECCCCcEEEEEecCCCCCCCCCccceEECCCCcEEEEe----CCCCeEEEEcCCC--ceEEEecCCCCCCccccc
Q 020019 125 AVAAYDLSTWNRLFLTQLSGPSDGKSCADDVTVDAEGNAYVTD----VTGSKIWKVGVKG--EFLSIISSPLFTPKEWYK 198 (332)
Q Consensus 125 ~l~~~d~~~g~~~~~~~l~~~~~~~~~~ndiavd~dG~lyvtd----~~~~~I~~v~~~g--~~~~~~~~~~~~~p~~~~ 198 (332)
.|.+||+++++....... .. ......+.+.++++.+++- +..+.|..+|... +........
T Consensus 191 ~IrIwD~rsg~~v~tl~~--H~--~~~~~~~~w~~~~~~ivt~G~s~s~Dr~VklWDlr~~~~p~~~~~~d--------- 257 (493)
T PTZ00421 191 KLNIIDPRDGTIVSSVEA--HA--SAKSQRCLWAKRKDLIITLGCSKSQQRQIMLWDTRKMASPYSTVDLD--------- 257 (493)
T ss_pred EEEEEECCCCcEEEEEec--CC--CCcceEEEEcCCCCeEEEEecCCCCCCeEEEEeCCCCCCceeEeccC---------
Confidence 788999998886544332 11 1223345666776555542 2245666666541 111111100
Q ss_pred CccccCeEEEccCc-eEEEEeCCCCeEEEEeCCCC
Q 020019 199 NLVGLNGIVYHPDG-FLIVIHTFSGNLFKIDIVDG 232 (332)
Q Consensus 199 ~~~~~nGi~~~~dG-~Lyva~~~~~~i~~id~~~~ 232 (332)
......-..+++|+ .||++-.+.+.|..+++.++
T Consensus 258 ~~~~~~~~~~d~d~~~L~lggkgDg~Iriwdl~~~ 292 (493)
T PTZ00421 258 QSSALFIPFFDEDTNLLYIGSKGEGNIRCFELMNE 292 (493)
T ss_pred CCCceEEEEEcCCCCEEEEEEeCCCeEEEEEeeCC
Confidence 01122234688999 77777666788888888766
|
|
| >KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=96.70 E-value=0.42 Score=49.05 Aligned_cols=65 Identities=14% Similarity=0.065 Sum_probs=46.4
Q ss_pred cCCccccceEEcCCCCEEEEEecCCeEEEEECCCCCCCccceeeeEEecccCcCCCccceEEEeCCCCeEEEEEeC
Q 020019 42 SSSFFRECAKWDDSGRRFIVSFLDGGIGQVAVPDDYPPGTVLEEVTLVKDLELTGNGSLGLVLDHPRNRLLVVAAD 117 (332)
Q Consensus 42 ~~~~~pegia~d~~g~~~~~~~~~g~I~~vd~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~vd~~~g~l~v~~~~ 117 (332)
......-|++++|..=+.++++..|.|.-||..=++. ++ .|..+. ..+.|+.+++. +-+||+.+|
T Consensus 7 skSsRvKglsFHP~rPwILtslHsG~IQlWDYRM~tl----i~--rFdeHd----GpVRgv~FH~~-qplFVSGGD 71 (1202)
T KOG0292|consen 7 SKSSRVKGLSFHPKRPWILTSLHSGVIQLWDYRMGTL----ID--RFDEHD----GPVRGVDFHPT-QPLFVSGGD 71 (1202)
T ss_pred cccccccceecCCCCCEEEEeecCceeeeehhhhhhH----Hh--hhhccC----CccceeeecCC-CCeEEecCC
Confidence 3344667899999988888889999999998764442 22 232221 14689999995 888998765
|
|
| >PLN00181 protein SPA1-RELATED; Provisional | Back alignment and domain information |
|---|
Probab=96.68 E-value=1.1 Score=47.05 Aligned_cols=163 Identities=8% Similarity=0.083 Sum_probs=96.6
Q ss_pred cccceEEcCCCCEEEEEecCCeEEEEECCCCCCCccceeeeEEecccCcCCCccceEEEeCCCCeEEEEEeCcCCCccce
Q 020019 46 FRECAKWDDSGRRFIVSFLDGGIGQVAVPDDYPPGTVLEEVTLVKDLELTGNGSLGLVLDHPRNRLLVVAADVFGNKYSA 125 (332)
Q Consensus 46 ~pegia~d~~g~~~~~~~~~g~I~~vd~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~vd~~~g~l~v~~~~~~~~~~~~ 125 (332)
....++|+++|+++++...++.|..++............ ........ .....++..++..+...++.. ..+.
T Consensus 485 ~V~~i~fs~dg~~latgg~D~~I~iwd~~~~~~~~~~~~-~~~~~~~~--~~~v~~l~~~~~~~~~las~~-----~Dg~ 556 (793)
T PLN00181 485 LVCAIGFDRDGEFFATAGVNKKIKIFECESIIKDGRDIH-YPVVELAS--RSKLSGICWNSYIKSQVASSN-----FEGV 556 (793)
T ss_pred cEEEEEECCCCCEEEEEeCCCEEEEEECCcccccccccc-cceEEecc--cCceeeEEeccCCCCEEEEEe-----CCCe
Confidence 345689999999887777789998888643110000000 00000000 113567777764344333332 1356
Q ss_pred EEEEECCCCcEEEEEecCCCCCCCCCccceEECC-CCcEEEEeCCCCeEEEEcCC-CceEEEecCCCCCCcccccCcccc
Q 020019 126 VAAYDLSTWNRLFLTQLSGPSDGKSCADDVTVDA-EGNAYVTDVTGSKIWKVGVK-GEFLSIISSPLFTPKEWYKNLVGL 203 (332)
Q Consensus 126 l~~~d~~~g~~~~~~~l~~~~~~~~~~ndiavd~-dG~lyvtd~~~~~I~~v~~~-g~~~~~~~~~~~~~p~~~~~~~~~ 203 (332)
+..||.++++......- . ......+++++ +++++++-+..+.|..+|.. ++....+... ...
T Consensus 557 v~lWd~~~~~~~~~~~~--H---~~~V~~l~~~p~~~~~L~Sgs~Dg~v~iWd~~~~~~~~~~~~~-----------~~v 620 (793)
T PLN00181 557 VQVWDVARSQLVTEMKE--H---EKRVWSIDYSSADPTLLASGSDDGSVKLWSINQGVSIGTIKTK-----------ANI 620 (793)
T ss_pred EEEEECCCCeEEEEecC--C---CCCEEEEEEcCCCCCEEEEEcCCCEEEEEECCCCcEEEEEecC-----------CCe
Confidence 88999988776543321 1 24567899986 68888888888888888865 3332222111 123
Q ss_pred CeEEEc-cCceEEEEeCCCCeEEEEeCCCC
Q 020019 204 NGIVYH-PDGFLIVIHTFSGNLFKIDIVDG 232 (332)
Q Consensus 204 nGi~~~-~dG~Lyva~~~~~~i~~id~~~~ 232 (332)
..+.+. ++|.++++-..++.|+.+|+...
T Consensus 621 ~~v~~~~~~g~~latgs~dg~I~iwD~~~~ 650 (793)
T PLN00181 621 CCVQFPSESGRSLAFGSADHKVYYYDLRNP 650 (793)
T ss_pred EEEEEeCCCCCEEEEEeCCCeEEEEECCCC
Confidence 466774 45766666677889999998754
|
|
| >PF14269 Arylsulfotran_2: Arylsulfotransferase (ASST) | Back alignment and domain information |
|---|
Probab=96.64 E-value=0.13 Score=47.14 Aligned_cols=129 Identities=13% Similarity=0.057 Sum_probs=83.2
Q ss_pred ccccceEEcCCCCEEEEEecCCeEEEEECCCCCCCccceeeeEEec-cc-C---------cCCCccceEEEe---CCCCe
Q 020019 45 FFRECAKWDDSGRRFIVSFLDGGIGQVAVPDDYPPGTVLEEVTLVK-DL-E---------LTGNGSLGLVLD---HPRNR 110 (332)
Q Consensus 45 ~~pegia~d~~g~~~~~~~~~g~I~~vd~~~~~~~~~~~~~~~~~~-~~-~---------~~~~~~~gi~vd---~~~g~ 110 (332)
++..++..+++|++++++.....|++|++.+++. .|.- .+ . +. .-....+- +++++
T Consensus 144 ~HiNsV~~~~~G~yLiS~R~~~~i~~I~~~tG~I--------~W~lgG~~~~df~~~~~~f~--~QHdar~~~~~~~~~~ 213 (299)
T PF14269_consen 144 FHINSVDKDDDGDYLISSRNTSTIYKIDPSTGKI--------IWRLGGKRNSDFTLPATNFS--WQHDARFLNESNDDGT 213 (299)
T ss_pred cEeeeeeecCCccEEEEecccCEEEEEECCCCcE--------EEEeCCCCCCcccccCCcEe--eccCCEEeccCCCCCE
Confidence 4677899999999777777789999999887761 2331 11 0 11 11222332 22367
Q ss_pred EEEEEeCcC-----CCccceEEEEECCCCcEEEEEecC-CCCCCC-CCccceEECCCCcEEEEeCCCCeEEEEcCCCceE
Q 020019 111 LLVVAADVF-----GNKYSAVAAYDLSTWNRLFLTQLS-GPSDGK-SCADDVTVDAEGNAYVTDVTGSKIWKVGVKGEFL 183 (332)
Q Consensus 111 l~v~~~~~~-----~~~~~~l~~~d~~~g~~~~~~~l~-~~~~~~-~~~ndiavd~dG~lyvtd~~~~~I~~v~~~g~~~ 183 (332)
+-+-++... ....+.++.+|+++.+.....+.. .+..-. .....+..-|+|+++|+....+++..++++|+..
T Consensus 214 IslFDN~~~~~~~~~~s~~~v~~ld~~~~~~~~~~~~~~~~~~~~s~~~G~~Q~L~nGn~li~~g~~g~~~E~~~~G~vv 293 (299)
T PF14269_consen 214 ISLFDNANSDFNGTEPSRGLVLELDPETMTVTLVREYSDHPDGFYSPSQGSAQRLPNGNVLIGWGNNGRISEFTPDGEVV 293 (299)
T ss_pred EEEEcCCCCCCCCCcCCCceEEEEECCCCEEEEEEEeecCCCcccccCCCcceECCCCCEEEecCCCceEEEECCCCCEE
Confidence 777776311 123567888999876655444443 222111 3445566778899999999999999999999864
|
|
| >COG1520 FOG: WD40-like repeat [Function unknown] | Back alignment and domain information |
|---|
Probab=96.62 E-value=0.65 Score=43.85 Aligned_cols=108 Identities=17% Similarity=0.157 Sum_probs=69.1
Q ss_pred EeCCCCeEEEEEeCcCCCccceEEEEECCCCcEEEEEecCCCCCCCCCccceEECCCCcEEEEeCCCCeEEEEcC-CCce
Q 020019 104 LDHPRNRLLVVAADVFGNKYSAVAAYDLSTWNRLFLTQLSGPSDGKSCADDVTVDAEGNAYVTDVTGSKIWKVGV-KGEF 182 (332)
Q Consensus 104 vd~~~g~l~v~~~~~~~~~~~~l~~~d~~~g~~~~~~~l~~~~~~~~~~ndiavd~dG~lyvtd~~~~~I~~v~~-~g~~ 182 (332)
++.+ |++|+... .+.++.+|+++++.++...+.. .....++-++..+|+||+++... .+|.+|+ +|+.
T Consensus 65 ~~~d-g~v~~~~~------~G~i~A~d~~~g~~~W~~~~~~---~~~~~~~~~~~~~G~i~~g~~~g-~~y~ld~~~G~~ 133 (370)
T COG1520 65 ADGD-GTVYVGTR------DGNIFALNPDTGLVKWSYPLLG---AVAQLSGPILGSDGKIYVGSWDG-KLYALDASTGTL 133 (370)
T ss_pred EeeC-CeEEEecC------CCcEEEEeCCCCcEEecccCcC---cceeccCceEEeCCeEEEecccc-eEEEEECCCCcE
Confidence 5554 99999854 3579999999998776554421 12344445555599999998765 9999999 6875
Q ss_pred EEEecCCCCCCcccccCccccCeEEEccCceEEEEeCCCCeEEEEeCCCC
Q 020019 183 LSIISSPLFTPKEWYKNLVGLNGIVYHPDGFLIVIHTFSGNLFKIDIVDG 232 (332)
Q Consensus 183 ~~~~~~~~~~~p~~~~~~~~~nGi~~~~dG~Lyva~~~~~~i~~id~~~~ 232 (332)
.-...... . + ..... ++-.++.+|+.. ..+.++.++.+++
T Consensus 134 ~W~~~~~~-~-~------~~~~~-~v~~~~~v~~~s-~~g~~~al~~~tG 173 (370)
T COG1520 134 VWSRNVGG-S-P------YYASP-PVVGDGTVYVGT-DDGHLYALNADTG 173 (370)
T ss_pred EEEEecCC-C-e------EEecC-cEEcCcEEEEec-CCCeEEEEEccCC
Confidence 53332222 0 1 01112 334467777765 5677888888776
|
|
| >COG3292 Predicted periplasmic ligand-binding sensor domain [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=96.59 E-value=0.023 Score=55.20 Aligned_cols=145 Identities=20% Similarity=0.194 Sum_probs=89.6
Q ss_pred ccceEEEeCCCCeEEEEEeCcCCCccceEEEEECCCCcEEEEEecCCCCCCCCCccceEECCCCcEEEEeCCCCeEEEEc
Q 020019 98 GSLGLVLDHPRNRLLVVAADVFGNKYSAVAAYDLSTWNRLFLTQLSGPSDGKSCADDVTVDAEGNAYVTDVTGSKIWKVG 177 (332)
Q Consensus 98 ~~~gi~vd~~~g~l~v~~~~~~~~~~~~l~~~d~~~g~~~~~~~l~~~~~~~~~~ndiavd~dG~lyvtd~~~~~I~~v~ 177 (332)
....+.+|.+ |++||+..+ .+++||..+++....... |- ....|.++.|-.|++||... ..|++.+
T Consensus 166 ~V~aLv~D~~-g~lWvgT~d-------GL~~fd~~~gkalql~s~--~~--dk~I~al~~d~qg~LWVGTd--qGv~~~e 231 (671)
T COG3292 166 PVVALVFDAN-GRLWVGTPD-------GLSYFDAGRGKALQLASP--PL--DKAINALIADVQGRLWVGTD--QGVYLQE 231 (671)
T ss_pred cceeeeeecc-CcEEEecCC-------cceEEccccceEEEcCCC--cc--hhhHHHHHHHhcCcEEEEec--cceEEEc
Confidence 3567888885 999999763 588999988876543221 11 14567788899999999753 4677888
Q ss_pred CCCceEEEecCCCCCCcccccCccccCeEEEccCceEEEEeCCCCeEEEEeCCCCCCccceeEEEEecCCCCCCCCeEEE
Q 020019 178 VKGEFLSIISSPLFTPKEWYKNLVGLNGIVYHPDGFLIVIHTFSGNLFKIDIVDGVGEGEEIKLIRVAGGPLSFGDGLEL 257 (332)
Q Consensus 178 ~~g~~~~~~~~~~~~~p~~~~~~~~~nGi~~~~dG~Lyva~~~~~~i~~id~~~~~~~~~~~~~v~~~g~~~~~pdGi~~ 257 (332)
+.|....-.. +.+ | ....+-+.-|.+|++|+.... | ++|..+..... .....+.. ...+...++..
T Consensus 232 ~~G~~~sn~~-~~l--p-----~~~I~ll~qD~qG~lWiGTen-G-l~r~~l~rq~L---q~~~~~~~-l~~S~vnsL~~ 297 (671)
T COG3292 232 AEGWRASNWG-PML--P-----SGNILLLVQDAQGELWIGTEN-G-LWRTRLPRQGL---QIPLSKMH-LGVSTVNSLWL 297 (671)
T ss_pred hhhccccccC-CCC--c-----chheeeeecccCCCEEEeecc-c-ceeEecCCCCc---cccccccC-Cccccccceee
Confidence 7773221111 111 1 112345556667899998643 3 44555543311 12212221 23456678999
Q ss_pred eCCCeEEEEeCCc
Q 020019 258 LSPTKLVVAGNPS 270 (332)
Q Consensus 258 ~~dG~l~va~~~~ 270 (332)
|.+|.||+..+..
T Consensus 298 D~dGsLWv~t~~g 310 (671)
T COG3292 298 DTDGSLWVGTYGG 310 (671)
T ss_pred ccCCCEeeeccCc
Confidence 9999999998664
|
|
| >KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=96.59 E-value=0.4 Score=44.30 Aligned_cols=141 Identities=16% Similarity=0.261 Sum_probs=89.6
Q ss_pred ccceEEEeCCCCeEEEEEeCcCCCccceEEEEECCCCcEEEEEecCCCCCCCCCccc-eEECCC-CcEEEE---eCCCCe
Q 020019 98 GSLGLVLDHPRNRLLVVAADVFGNKYSAVAAYDLSTWNRLFLTQLSGPSDGKSCADD-VTVDAE-GNAYVT---DVTGSK 172 (332)
Q Consensus 98 ~~~gi~vd~~~g~l~v~~~~~~~~~~~~l~~~d~~~g~~~~~~~l~~~~~~~~~~nd-iavd~d-G~lyvt---d~~~~~ 172 (332)
....+.++. .||.|+-.+ .+++||+++-++...++... ..|.+ +|+.++ ++-|++ +...|.
T Consensus 89 ~IL~VrmNr--~RLvV~Lee-------~IyIydI~~MklLhTI~t~~-----~n~~gl~AlS~n~~n~ylAyp~s~t~Gd 154 (391)
T KOG2110|consen 89 SILAVRMNR--KRLVVCLEE-------SIYIYDIKDMKLLHTIETTP-----PNPKGLCALSPNNANCYLAYPGSTTSGD 154 (391)
T ss_pred ceEEEEEcc--ceEEEEEcc-------cEEEEecccceeehhhhccC-----CCccceEeeccCCCCceEEecCCCCCce
Confidence 456777775 799999763 59999999877766554421 22332 444554 344553 455788
Q ss_pred EEEEcCCCc-eEEEecCCCCCCcccccCccccCeEEEccCceEEEEeCCCCeEEEEeCC-CCCCccceeEEEEecCCCCC
Q 020019 173 IWKVGVKGE-FLSIISSPLFTPKEWYKNLVGLNGIVYHPDGFLIVIHTFSGNLFKIDIV-DGVGEGEEIKLIRVAGGPLS 250 (332)
Q Consensus 173 I~~v~~~g~-~~~~~~~~~~~~p~~~~~~~~~nGi~~~~dG~Lyva~~~~~~i~~id~~-~~~~~~~~~~~v~~~g~~~~ 250 (332)
|+.+|...- ....++.. ......|+|++||++..+-+..|+|.|+-.. .| +.+.++.-+ ....
T Consensus 155 V~l~d~~nl~~v~~I~aH----------~~~lAalafs~~G~llATASeKGTVIRVf~v~~G----~kl~eFRRG-~~~~ 219 (391)
T KOG2110|consen 155 VVLFDTINLQPVNTINAH----------KGPLAALAFSPDGTLLATASEKGTVIRVFSVPEG----QKLYEFRRG-TYPV 219 (391)
T ss_pred EEEEEcccceeeeEEEec----------CCceeEEEECCCCCEEEEeccCceEEEEEEcCCc----cEeeeeeCC-ceee
Confidence 988887632 22222211 1234689999999999999999999876543 44 355555432 2223
Q ss_pred CCCeEEEeCCCeEEEEe
Q 020019 251 FGDGLELLSPTKLVVAG 267 (332)
Q Consensus 251 ~pdGi~~~~dG~l~va~ 267 (332)
....+++++++.+..+.
T Consensus 220 ~IySL~Fs~ds~~L~~s 236 (391)
T KOG2110|consen 220 SIYSLSFSPDSQFLAAS 236 (391)
T ss_pred EEEEEEECCCCCeEEEe
Confidence 45678899998866664
|
|
| >COG1520 FOG: WD40-like repeat [Function unknown] | Back alignment and domain information |
|---|
Probab=96.58 E-value=0.69 Score=43.68 Aligned_cols=152 Identities=17% Similarity=0.182 Sum_probs=92.6
Q ss_pred EcCCCCEEEEEecCCeEEEEECCCCCCCccceeeeEEecccCcCCCcc-ceEEEeCCCCeEEEEEeCcCCCccceEEEEE
Q 020019 52 WDDSGRRFIVSFLDGGIGQVAVPDDYPPGTVLEEVTLVKDLELTGNGS-LGLVLDHPRNRLLVVAADVFGNKYSAVAAYD 130 (332)
Q Consensus 52 ~d~~g~~~~~~~~~g~I~~vd~~~~~~~~~~~~~~~~~~~~~~~~~~~-~gi~vd~~~g~l~v~~~~~~~~~~~~l~~~d 130 (332)
++.+|++|+. ..+|+|+.++++++.. .|........... .++..+ + |++|+.+.+ +.++.+|
T Consensus 65 ~~~dg~v~~~-~~~G~i~A~d~~~g~~--------~W~~~~~~~~~~~~~~~~~~-~-G~i~~g~~~------g~~y~ld 127 (370)
T COG1520 65 ADGDGTVYVG-TRDGNIFALNPDTGLV--------KWSYPLLGAVAQLSGPILGS-D-GKIYVGSWD------GKLYALD 127 (370)
T ss_pred EeeCCeEEEe-cCCCcEEEEeCCCCcE--------EecccCcCcceeccCceEEe-C-CeEEEeccc------ceEEEEE
Confidence 7777877765 4578999999988761 3432111000112 233444 4 999999863 3799999
Q ss_pred CCCCcEEEEEecCCCCCCCCCccceEECCCCcEEEEeCCCCeEEEEcCC-CceEEEecCCC-CCCcccccCccccCeEEE
Q 020019 131 LSTWNRLFLTQLSGPSDGKSCADDVTVDAEGNAYVTDVTGSKIWKVGVK-GEFLSIISSPL-FTPKEWYKNLVGLNGIVY 208 (332)
Q Consensus 131 ~~~g~~~~~~~l~~~~~~~~~~ndiavd~dG~lyvtd~~~~~I~~v~~~-g~~~~~~~~~~-~~~p~~~~~~~~~nGi~~ 208 (332)
.++|++.+...... . ..-.+-++-.++.+|+.. ..+.++.++.+ |+..-....+. .. ........
T Consensus 128 ~~~G~~~W~~~~~~--~--~~~~~~~v~~~~~v~~~s-~~g~~~al~~~tG~~~W~~~~~~~~~-------~~~~~~~~- 194 (370)
T COG1520 128 ASTGTLVWSRNVGG--S--PYYASPPVVGDGTVYVGT-DDGHLYALNADTGTLKWTYETPAPLS-------LSIYGSPA- 194 (370)
T ss_pred CCCCcEEEEEecCC--C--eEEecCcEEcCcEEEEec-CCCeEEEEEccCCcEEEEEecCCccc-------cccccCce-
Confidence 98999988777643 0 111223444567788875 66899999988 76543222211 11 11111222
Q ss_pred ccCceEEEEeCC-CCeEEEEeCCCCC
Q 020019 209 HPDGFLIVIHTF-SGNLFKIDIVDGV 233 (332)
Q Consensus 209 ~~dG~Lyva~~~-~~~i~~id~~~~~ 233 (332)
..++.+|+.... ++.++.+++.+++
T Consensus 195 ~~~~~vy~~~~~~~~~~~a~~~~~G~ 220 (370)
T COG1520 195 IASGTVYVGSDGYDGILYALNAEDGT 220 (370)
T ss_pred eecceEEEecCCCcceEEEEEccCCc
Confidence 456788888664 5589999998773
|
|
| >TIGR02276 beta_rpt_yvtn 40-residue YVTN family beta-propeller repeat | Back alignment and domain information |
|---|
Probab=96.55 E-value=0.014 Score=36.37 Aligned_cols=41 Identities=29% Similarity=0.361 Sum_probs=31.9
Q ss_pred cCc-eEEEEeCCCCeEEEEeCCCCCCccceeEEEEecCCCCCCCCeEEEe
Q 020019 210 PDG-FLIVIHTFSGNLFKIDIVDGVGEGEEIKLIRVAGGPLSFGDGLELL 258 (332)
Q Consensus 210 ~dG-~Lyva~~~~~~i~~id~~~~~~~~~~~~~v~~~g~~~~~pdGi~~~ 258 (332)
||| +||+++...++|..||+.++ ..+..+... ..|.+|+++
T Consensus 1 pd~~~lyv~~~~~~~v~~id~~~~----~~~~~i~vg----~~P~~i~~~ 42 (42)
T TIGR02276 1 PDGTKLYVTNSGSNTVSVIDTATN----KVIATIPVG----GYPFGVAVS 42 (42)
T ss_pred CCCCEEEEEeCCCCEEEEEECCCC----eEEEEEECC----CCCceEEeC
Confidence 567 89999999999999999866 255656653 578888874
|
This repeat of about 40 amino acids is found in up to 14 copies per protein. Archaea Methanosarcina mazei and Methanosarcina acetivorans each have over 10 genes that encode tandem copies of this repeat, which is also found in other species. PSIPRED predicts with high confidence that each 40-residue repeats contains four beta strands. This model overlaps somewhat with the NHL repeat (Pfam pfam01436) and also shows sequence similarity to the WD domain, G-beta repeat (Pfam pfam00400). |
| >smart00284 OLF Olfactomedin-like domains | Back alignment and domain information |
|---|
Probab=96.52 E-value=0.4 Score=42.72 Aligned_cols=144 Identities=18% Similarity=0.140 Sum_probs=82.1
Q ss_pred CeEEEEEeCcCCCccceEEEEECCCCcEEEEEecCCCCCC--------CCCccceEECCCC--cEEEEeCCCCe--EEEE
Q 020019 109 NRLLVVAADVFGNKYSAVAAYDLSTWNRLFLTQLSGPSDG--------KSCADDVTVDAEG--NAYVTDVTGSK--IWKV 176 (332)
Q Consensus 109 g~l~v~~~~~~~~~~~~l~~~d~~~g~~~~~~~l~~~~~~--------~~~~ndiavd~dG--~lyvtd~~~~~--I~~v 176 (332)
|.||.--.. ...|.+||++++.+.....|+...-. ...-=|+|+|.+| -||-|....+. |.|+
T Consensus 84 gslYY~~~~-----s~~iiKydL~t~~v~~~~~Lp~a~y~~~~~Y~~~~~sdiDlAvDE~GLWvIYat~~~~g~ivvSkL 158 (255)
T smart00284 84 GSLYFNKFN-----SHDICRFDLTTETYQKEPLLNGAGYNNRFPYAWGGFSDIDLAVDENGLWVIYATEQNAGKIVISKL 158 (255)
T ss_pred ceEEEEecC-----CccEEEEECCCCcEEEEEecCccccccccccccCCCccEEEEEcCCceEEEEeccCCCCCEEEEee
Confidence 788885432 35699999999887655556421100 1122479999999 13445544454 4589
Q ss_pred cCCCc-eEEEecCCCCCCcccccCccccCeEEEccCceEEEEeC---CCCeE-EEEeCCCCCCccceeEEEEecCCCCCC
Q 020019 177 GVKGE-FLSIISSPLFTPKEWYKNLVGLNGIVYHPDGFLIVIHT---FSGNL-FKIDIVDGVGEGEEIKLIRVAGGPLSF 251 (332)
Q Consensus 177 ~~~g~-~~~~~~~~~~~~p~~~~~~~~~nGi~~~~dG~Lyva~~---~~~~i-~~id~~~~~~~~~~~~~v~~~g~~~~~ 251 (332)
|++.- ....++..... ....|.+.+. |.||++++ ...+| +.+|+.+++. ....+.++ .....
T Consensus 159 np~tL~ve~tW~T~~~k-------~sa~naFmvC--GvLY~~~s~~~~~~~I~yayDt~t~~~---~~~~i~f~-n~y~~ 225 (255)
T smart00284 159 NPATLTIENTWITTYNK-------RSASNAFMIC--GILYVTRSLGSKGEKVFYAYDTNTGKE---GHLDIPFE-NMYEY 225 (255)
T ss_pred CcccceEEEEEEcCCCc-------ccccccEEEe--eEEEEEccCCCCCcEEEEEEECCCCcc---ceeeeeec-ccccc
Confidence 88642 33334332111 1223555555 89999985 34455 6788876631 22223443 12233
Q ss_pred CCeEEEeC-CCeEEEEeCCc
Q 020019 252 GDGLELLS-PTKLVVAGNPS 270 (332)
Q Consensus 252 pdGi~~~~-dG~l~va~~~~ 270 (332)
-.-|...| |.+||+-+++.
T Consensus 226 ~s~l~YNP~d~~LY~wdng~ 245 (255)
T smart00284 226 ISMLDYNPNDRKLYAWNNGH 245 (255)
T ss_pred ceeceeCCCCCeEEEEeCCe
Confidence 34466665 68899998875
|
|
| >PTZ00420 coronin; Provisional | Back alignment and domain information |
|---|
Probab=96.51 E-value=1.1 Score=44.99 Aligned_cols=158 Identities=11% Similarity=-0.002 Sum_probs=89.5
Q ss_pred cccceEEcCCCCEEE-EEecCCeEEEEECCCCCCCccceeeeEEecccCcCCCccceEEEeCCCCeEEEEEeCcCCCccc
Q 020019 46 FRECAKWDDSGRRFI-VSFLDGGIGQVAVPDDYPPGTVLEEVTLVKDLELTGNGSLGLVLDHPRNRLLVVAADVFGNKYS 124 (332)
Q Consensus 46 ~pegia~d~~g~~~~-~~~~~g~I~~vd~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~vd~~~g~l~v~~~~~~~~~~~ 124 (332)
....++|+|++..++ +...++.|..||..+++. .. .+. .+ ..+..+.++++ |.++++... .+
T Consensus 127 ~V~sVaf~P~g~~iLaSgS~DgtIrIWDl~tg~~----~~--~i~-~~----~~V~Slswspd-G~lLat~s~-----D~ 189 (568)
T PTZ00420 127 KISIIDWNPMNYYIMCSSGFDSFVNIWDIENEKR----AF--QIN-MP----KKLSSLKWNIK-GNLLSGTCV-----GK 189 (568)
T ss_pred cEEEEEECCCCCeEEEEEeCCCeEEEEECCCCcE----EE--EEe-cC----CcEEEEEECCC-CCEEEEEec-----CC
Confidence 456789999987655 446689999999876652 11 221 11 25678999996 887766542 35
Q ss_pred eEEEEECCCCcEEEEEecCCCCCCCCCccce---EECCCCcEEEEeCCC----CeEEEEcCC--CceEEEecCCCCCCcc
Q 020019 125 AVAAYDLSTWNRLFLTQLSGPSDGKSCADDV---TVDAEGNAYVTDVTG----SKIWKVGVK--GEFLSIISSPLFTPKE 195 (332)
Q Consensus 125 ~l~~~d~~~g~~~~~~~l~~~~~~~~~~ndi---avd~dG~lyvtd~~~----~~I~~v~~~--g~~~~~~~~~~~~~p~ 195 (332)
.+.+||+++++......- +.. ......+ .+.++++.+++-... ..|...|.. ++.+.......
T Consensus 190 ~IrIwD~Rsg~~i~tl~g--H~g-~~~s~~v~~~~fs~d~~~IlTtG~d~~~~R~VkLWDlr~~~~pl~~~~ld~----- 261 (568)
T PTZ00420 190 HMHIIDPRKQEIASSFHI--HDG-GKNTKNIWIDGLGGDDNYILSTGFSKNNMREMKLWDLKNTTSALVTMSIDN----- 261 (568)
T ss_pred EEEEEECCCCcEEEEEec--ccC-CceeEEEEeeeEcCCCCEEEEEEcCCCCccEEEEEECCCCCCceEEEEecC-----
Confidence 689999999877643322 111 1011111 123666666553322 256666654 33332211100
Q ss_pred cccCccccCeEEEccC-ceEEEEeCCCCeEEEEeCCCC
Q 020019 196 WYKNLVGLNGIVYHPD-GFLIVIHTFSGNLFKIDIVDG 232 (332)
Q Consensus 196 ~~~~~~~~nGi~~~~d-G~Lyva~~~~~~i~~id~~~~ 232 (332)
..++---.++++ |.+|++-.+.+.|+-++...+
T Consensus 262 ----~~~~L~p~~D~~tg~l~lsGkGD~tIr~~e~~~~ 295 (568)
T PTZ00420 262 ----ASAPLIPHYDESTGLIYLIGKGDGNCRYYQHSLG 295 (568)
T ss_pred ----CccceEEeeeCCCCCEEEEEECCCeEEEEEccCC
Confidence 001101134444 688888888888888887655
|
|
| >PRK01029 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=96.40 E-value=1 Score=43.60 Aligned_cols=138 Identities=11% Similarity=0.067 Sum_probs=72.9
Q ss_pred EEEeCCCCe----EEEEEeCcCCCccceEEEEECCCCcEEEEEecCCCCCCCCCccceEECCCCc-EEEEeC--CCCeEE
Q 020019 102 LVLDHPRNR----LLVVAADVFGNKYSAVAAYDLSTWNRLFLTQLSGPSDGKSCADDVTVDAEGN-AYVTDV--TGSKIW 174 (332)
Q Consensus 102 i~vd~~~g~----l~v~~~~~~~~~~~~l~~~d~~~g~~~~~~~l~~~~~~~~~~ndiavd~dG~-lyvtd~--~~~~I~ 174 (332)
-+..|+ |+ +|++... +...|++.++++|+......+++ .....++.|||+ |.++-. +...+|
T Consensus 190 P~wSPD-G~~~~~~y~S~~~----g~~~I~~~~l~~g~~~~lt~~~g------~~~~p~wSPDG~~Laf~s~~~g~~di~ 258 (428)
T PRK01029 190 PTWMHI-GSGFPYLYVSYKL----GVPKIFLGSLENPAGKKILALQG------NQLMPTFSPRKKLLAFISDRYGNPDLF 258 (428)
T ss_pred ceEccC-CCceEEEEEEccC----CCceEEEEECCCCCceEeecCCC------CccceEECCCCCEEEEEECCCCCccee
Confidence 367786 43 2344432 24579999999887665554421 122468999995 655442 333555
Q ss_pred E--EcCC----CceEEEecCCCCCCcccccCccccCeEEEccCc-eEEEEeCC--CCeEEEEeCCCCCCccceeEEEEec
Q 020019 175 K--VGVK----GEFLSIISSPLFTPKEWYKNLVGLNGIVYHPDG-FLIVIHTF--SGNLFKIDIVDGVGEGEEIKLIRVA 245 (332)
Q Consensus 175 ~--v~~~----g~~~~~~~~~~~~~p~~~~~~~~~nGi~~~~dG-~Lyva~~~--~~~i~~id~~~~~~~~~~~~~v~~~ 245 (332)
. ++.+ |+..++.... .......+|+||| .|+++... ..+||+++++... ...+.+...
T Consensus 259 ~~~~~~~~g~~g~~~~lt~~~----------~~~~~~p~wSPDG~~Laf~s~~~g~~~ly~~~~~~~g---~~~~~lt~~ 325 (428)
T PRK01029 259 IQSFSLETGAIGKPRRLLNEA----------FGTQGNPSFSPDGTRLVFVSNKDGRPRIYIMQIDPEG---QSPRLLTKK 325 (428)
T ss_pred EEEeecccCCCCcceEeecCC----------CCCcCCeEECCCCCEEEEEECCCCCceEEEEECcccc---cceEEeccC
Confidence 5 3332 2333322111 0112356999999 66665433 3478988876321 123323221
Q ss_pred CCCCCCCCeEEEeCCCe-EEEE
Q 020019 246 GGPLSFGDGLELLSPTK-LVVA 266 (332)
Q Consensus 246 g~~~~~pdGi~~~~dG~-l~va 266 (332)
........+.|||+ |+++
T Consensus 326 ---~~~~~~p~wSPDG~~Laf~ 344 (428)
T PRK01029 326 ---YRNSSCPAWSPDGKKIAFC 344 (428)
T ss_pred ---CCCccceeECCCCCEEEEE
Confidence 11223456888877 4444
|
|
| >KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription] | Back alignment and domain information |
|---|
Probab=96.32 E-value=0.38 Score=48.31 Aligned_cols=184 Identities=13% Similarity=0.096 Sum_probs=109.7
Q ss_pred ccceEEcCCCCEEEEEecCCeEEEEECCCCCCCccceeeeEEecccCcCCCcc-ceEEEeCCCCeEEEEEeCcCCCccce
Q 020019 47 RECAKWDDSGRRFIVSFLDGGIGQVAVPDDYPPGTVLEEVTLVKDLELTGNGS-LGLVLDHPRNRLLVVAADVFGNKYSA 125 (332)
Q Consensus 47 pegia~d~~g~~~~~~~~~g~I~~vd~~~~~~~~~~~~~~~~~~~~~~~~~~~-~gi~vd~~~g~l~v~~~~~~~~~~~~ 125 (332)
..|..+.|+.++++++..++.+.-|+.++... .+. .- .+..| +.+.+.| +|. |++.... ++.++
T Consensus 454 Vyg~sFsPd~rfLlScSED~svRLWsl~t~s~--------~V~-y~--GH~~PVwdV~F~P-~Gy-YFatas~--D~tAr 518 (707)
T KOG0263|consen 454 VYGCSFSPDRRFLLSCSEDSSVRLWSLDTWSC--------LVI-YK--GHLAPVWDVQFAP-RGY-YFATASH--DQTAR 518 (707)
T ss_pred eeeeeecccccceeeccCCcceeeeeccccee--------EEE-ec--CCCcceeeEEecC-Cce-EEEecCC--Cceee
Confidence 35788999988888777778887777765542 111 11 12333 5677888 476 6555421 23555
Q ss_pred EEEEECCCCcEEEEEecCCCCCCCCCccceEECCCCcEEEEeCCCCeEEEEcCC-CceEEEecCCCCCCcccccCccccC
Q 020019 126 VAAYDLSTWNRLFLTQLSGPSDGKSCADDVTVDAEGNAYVTDVTGSKIWKVGVK-GEFLSIISSPLFTPKEWYKNLVGLN 204 (332)
Q Consensus 126 l~~~d~~~g~~~~~~~l~~~~~~~~~~ndiavd~dG~lyvtd~~~~~I~~v~~~-g~~~~~~~~~~~~~p~~~~~~~~~n 204 (332)
|+..|- .++++.+. ...+-.+.+.++|+.+...|.+....|...|.- |...++..... ....
T Consensus 519 LWs~d~--~~PlRifa-----ghlsDV~cv~FHPNs~Y~aTGSsD~tVRlWDv~~G~~VRiF~GH~----------~~V~ 581 (707)
T KOG0263|consen 519 LWSTDH--NKPLRIFA-----GHLSDVDCVSFHPNSNYVATGSSDRTVRLWDVSTGNSVRIFTGHK----------GPVT 581 (707)
T ss_pred eeeccc--CCchhhhc-----ccccccceEEECCcccccccCCCCceEEEEEcCCCcEEEEecCCC----------CceE
Confidence 554443 34433221 112344568999998766776666655555532 44344332111 1246
Q ss_pred eEEEccCceEEEEeCCCCeEEEEeCCCCCCccceeEEEEecCCCCCCCCeEEEeCCCeEEEEeCC
Q 020019 205 GIVYHPDGFLIVIHTFSGNLFKIDIVDGVGEGEEIKLIRVAGGPLSFGDGLELLSPTKLVVAGNP 269 (332)
Q Consensus 205 Gi~~~~dG~Lyva~~~~~~i~~id~~~~~~~~~~~~~v~~~g~~~~~pdGi~~~~dG~l~va~~~ 269 (332)
.++++|+|.-.++-...+.|.-+|+.+++ .+..+. + +.+..+.|.+..||++++++..
T Consensus 582 al~~Sp~Gr~LaSg~ed~~I~iWDl~~~~----~v~~l~--~-Ht~ti~SlsFS~dg~vLasgg~ 639 (707)
T KOG0263|consen 582 ALAFSPCGRYLASGDEDGLIKIWDLANGS----LVKQLK--G-HTGTIYSLSFSRDGNVLASGGA 639 (707)
T ss_pred EEEEcCCCceEeecccCCcEEEEEcCCCc----chhhhh--c-ccCceeEEEEecCCCEEEecCC
Confidence 89999999444455567778888888763 232222 1 2355678999999999999743
|
|
| >KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=96.31 E-value=0.13 Score=48.09 Aligned_cols=183 Identities=11% Similarity=0.114 Sum_probs=104.8
Q ss_pred cceEEcCCCCEEEEEecCCeEEEEECCCCCCCccceeeeEEecccCcCCCccceEEEeCCCCeEEEEEeCcCCCccceEE
Q 020019 48 ECAKWDDSGRRFIVSFLDGGIGQVAVPDDYPPGTVLEEVTLVKDLELTGNGSLGLVLDHPRNRLLVVAADVFGNKYSAVA 127 (332)
Q Consensus 48 egia~d~~g~~~~~~~~~g~I~~vd~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~vd~~~g~l~v~~~~~~~~~~~~l~ 127 (332)
--++|.|+|+.+.+...+.+=.-+|..++. | .+... + =..++.++++.++ |-|..+.+ .. ..+ .
T Consensus 265 s~VafHPsG~~L~TasfD~tWRlWD~~tk~------E--lL~QE-G-Hs~~v~~iaf~~D-GSL~~tGG-lD--~~~--R 328 (459)
T KOG0272|consen 265 SRVAFHPSGKFLGTASFDSTWRLWDLETKS------E--LLLQE-G-HSKGVFSIAFQPD-GSLAATGG-LD--SLG--R 328 (459)
T ss_pred eeeeecCCCceeeecccccchhhcccccch------h--hHhhc-c-cccccceeEecCC-CceeeccC-cc--chh--h
Confidence 357888888877665555544444544443 1 12211 1 0136889999997 88655532 11 122 3
Q ss_pred EEECCCCcEEEEEecCCCCCCCCCccceEECCCCcEEEEeCCCCeEEEEcCCCceEEEecCCCCCCcccccCccccCeEE
Q 020019 128 AYDLSTWNRLFLTQLSGPSDGKSCADDVTVDAEGNAYVTDVTGSKIWKVGVKGEFLSIISSPLFTPKEWYKNLVGLNGIV 207 (332)
Q Consensus 128 ~~d~~~g~~~~~~~l~~~~~~~~~~ndiavd~dG~lyvtd~~~~~I~~v~~~g~~~~~~~~~~~~~p~~~~~~~~~nGi~ 207 (332)
+||+++|.-+.+..= . ..-..+++++|+|-...|.+..+.+-..|...+-.. +.-|+ ...-...+.
T Consensus 329 vWDlRtgr~im~L~g--H---~k~I~~V~fsPNGy~lATgs~Dnt~kVWDLR~r~~l------y~ipA---H~nlVS~Vk 394 (459)
T KOG0272|consen 329 VWDLRTGRCIMFLAG--H---IKEILSVAFSPNGYHLATGSSDNTCKVWDLRMRSEL------YTIPA---HSNLVSQVK 394 (459)
T ss_pred eeecccCcEEEEecc--c---ccceeeEeECCCceEEeecCCCCcEEEeeecccccc------eeccc---ccchhhheE
Confidence 689999986654321 1 123457999999988888888776555554433111 11111 112346899
Q ss_pred EccC-ceEEEEeCCCCeEEEEeCCCCCCccceeEEEEecCCCCCCCCeEEEeCCCeEEEEe
Q 020019 208 YHPD-GFLIVIHTFSGNLFKIDIVDGVGEGEEIKLIRVAGGPLSFGDGLELLSPTKLVVAG 267 (332)
Q Consensus 208 ~~~d-G~Lyva~~~~~~i~~id~~~~~~~~~~~~~v~~~g~~~~~pdGi~~~~dG~l~va~ 267 (332)
|+|+ |...++....+++--+...+. +.++.+.. .-...-.+.+.+|+..+++.
T Consensus 395 ~~p~~g~fL~TasyD~t~kiWs~~~~----~~~ksLaG---He~kV~s~Dis~d~~~i~t~ 448 (459)
T KOG0272|consen 395 YSPQEGYFLVTASYDNTVKIWSTRTW----SPLKSLAG---HEGKVISLDISPDSQAIATS 448 (459)
T ss_pred ecccCCeEEEEcccCcceeeecCCCc----ccchhhcC---CccceEEEEeccCCceEEEe
Confidence 9985 577777777776644444444 23433321 11334456666777766665
|
|
| >TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family | Back alignment and domain information |
|---|
Probab=96.27 E-value=0.7 Score=46.00 Aligned_cols=111 Identities=12% Similarity=0.088 Sum_probs=65.8
Q ss_pred CCCEEEEEecCCeEEEEECCCCCCCccceeeeEEecccCcCC-C--------ccceEEEeCCCCeEEEEEeCcCCCccce
Q 020019 55 SGRRFIVSFLDGGIGQVAVPDDYPPGTVLEEVTLVKDLELTG-N--------GSLGLVLDHPRNRLLVVAADVFGNKYSA 125 (332)
Q Consensus 55 ~g~~~~~~~~~g~I~~vd~~~~~~~~~~~~~~~~~~~~~~~~-~--------~~~gi~vd~~~g~l~v~~~~~~~~~~~~ 125 (332)
+|.+|+++. .+.|+.+|..+++. .|..++.... . ...|+++.. +++|++.. .+.
T Consensus 69 ~g~vyv~s~-~g~v~AlDa~TGk~--------lW~~~~~~~~~~~~~~~~~~~~rg~av~~--~~v~v~t~------dg~ 131 (527)
T TIGR03075 69 DGVMYVTTS-YSRVYALDAKTGKE--------LWKYDPKLPDDVIPVMCCDVVNRGVALYD--GKVFFGTL------DAR 131 (527)
T ss_pred CCEEEEECC-CCcEEEEECCCCce--------eeEecCCCCcccccccccccccccceEEC--CEEEEEcC------CCE
Confidence 456665543 57899999988862 3432222110 0 124567764 78998865 357
Q ss_pred EEEEECCCCcEEEEEecCCCCCCCCCccceEECCCCcEEEEeCC-----CCeEEEEcCC-CceE
Q 020019 126 VAAYDLSTWNRLFLTQLSGPSDGKSCADDVTVDAEGNAYVTDVT-----GSKIWKVGVK-GEFL 183 (332)
Q Consensus 126 l~~~d~~~g~~~~~~~l~~~~~~~~~~ndiavd~dG~lyvtd~~-----~~~I~~v~~~-g~~~ 183 (332)
|+.+|.++|++.+...+...........-.++. +|.+|+..+. .+.|+.+|.. |+.+
T Consensus 132 l~ALDa~TGk~~W~~~~~~~~~~~~~tssP~v~-~g~Vivg~~~~~~~~~G~v~AlD~~TG~~l 194 (527)
T TIGR03075 132 LVALDAKTGKVVWSKKNGDYKAGYTITAAPLVV-KGKVITGISGGEFGVRGYVTAYDAKTGKLV 194 (527)
T ss_pred EEEEECCCCCEEeecccccccccccccCCcEEE-CCEEEEeecccccCCCcEEEEEECCCCcee
Confidence 999999999998876653211111111222332 4578887542 5789999975 6643
|
This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens. |
| >KOG0293 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=96.11 E-value=0.44 Score=44.74 Aligned_cols=152 Identities=13% Similarity=0.075 Sum_probs=95.9
Q ss_pred ceEEcCCCCEEEEEecCCeEEEEECCCCCCCccceeeeEEecccCcCCCccceEEEeCCCCeEEEEEeCcCCCccceEEE
Q 020019 49 CAKWDDSGRRFIVSFLDGGIGQVAVPDDYPPGTVLEEVTLVKDLELTGNGSLGLVLDHPRNRLLVVAADVFGNKYSAVAA 128 (332)
Q Consensus 49 gia~d~~g~~~~~~~~~g~I~~vd~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~vd~~~g~l~v~~~~~~~~~~~~l~~ 128 (332)
-+.|+||.+-+++...+-.+..+|.+++... ... +...+.++...+.-|| |.-+|+... ...+..
T Consensus 274 yi~wSPDdryLlaCg~~e~~~lwDv~tgd~~-------~~y--~~~~~~S~~sc~W~pD-g~~~V~Gs~-----dr~i~~ 338 (519)
T KOG0293|consen 274 YIMWSPDDRYLLACGFDEVLSLWDVDTGDLR-------HLY--PSGLGFSVSSCAWCPD-GFRFVTGSP-----DRTIIM 338 (519)
T ss_pred EEEECCCCCeEEecCchHheeeccCCcchhh-------hhc--ccCcCCCcceeEEccC-CceeEecCC-----CCcEEE
Confidence 4789999886666554556888998888641 222 1212346778888887 776777542 345778
Q ss_pred EECCCCcEEEEEecCCCCCCCCCccceEECCCCc-EEEEeCCCCeEEEEcCCCceEE-EecCCCCCCcccccCccccCeE
Q 020019 129 YDLSTWNRLFLTQLSGPSDGKSCADDVTVDAEGN-AYVTDVTGSKIWKVGVKGEFLS-IISSPLFTPKEWYKNLVGLNGI 206 (332)
Q Consensus 129 ~d~~~g~~~~~~~l~~~~~~~~~~ndiavd~dG~-lyvtd~~~~~I~~v~~~g~~~~-~~~~~~~~~p~~~~~~~~~nGi 206 (332)
||++..... .++- .......|+++.+||. +|..+ ....|..++...+.-+ ... ..-....+
T Consensus 339 wdlDgn~~~-~W~g----vr~~~v~dlait~Dgk~vl~v~-~d~~i~l~~~e~~~dr~lis-----------e~~~its~ 401 (519)
T KOG0293|consen 339 WDLDGNILG-NWEG----VRDPKVHDLAITYDGKYVLLVT-VDKKIRLYNREARVDRGLIS-----------EEQPITSF 401 (519)
T ss_pred ecCCcchhh-cccc----cccceeEEEEEcCCCcEEEEEe-cccceeeechhhhhhhcccc-----------ccCceeEE
Confidence 998743322 2211 1124678999999996 44433 4455666655433222 111 11234688
Q ss_pred EEccCceEEEEeCCCCeEEEEeCCCC
Q 020019 207 VYHPDGFLIVIHTFSGNLFKIDIVDG 232 (332)
Q Consensus 207 ~~~~dG~Lyva~~~~~~i~~id~~~~ 232 (332)
+++.||.+...+.....|.-+|++..
T Consensus 402 ~iS~d~k~~LvnL~~qei~LWDl~e~ 427 (519)
T KOG0293|consen 402 SISKDGKLALVNLQDQEIHLWDLEEN 427 (519)
T ss_pred EEcCCCcEEEEEcccCeeEEeecchh
Confidence 99999988888888999988988843
|
|
| >KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=96.07 E-value=0.78 Score=42.77 Aligned_cols=233 Identities=17% Similarity=0.186 Sum_probs=117.3
Q ss_pred ccccceEEcCCCCEEEEEecCCeEEEEECCCCCCCccceeeeEEecccCcCCCccceEEE-----eCCCCeEEEEEeCcC
Q 020019 45 FFRECAKWDDSGRRFIVSFLDGGIGQVAVPDDYPPGTVLEEVTLVKDLELTGNGSLGLVL-----DHPRNRLLVVAADVF 119 (332)
Q Consensus 45 ~~pegia~d~~g~~~~~~~~~g~I~~vd~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~v-----d~~~g~l~v~~~~~~ 119 (332)
.+.-.++|+|||..+.+..-+|+|.-+||.+++.. . ..+...- ....+|+. ++. .+.++...
T Consensus 158 ~WVlcvawsPDgk~iASG~~dg~I~lwdpktg~~~----g-~~l~gH~----K~It~Lawep~hl~p~-~r~las~s--- 224 (480)
T KOG0271|consen 158 NWVLCVAWSPDGKKIASGSKDGSIRLWDPKTGQQI----G-RALRGHK----KWITALAWEPLHLVPP-CRRLASSS--- 224 (480)
T ss_pred cEEEEEEECCCcchhhccccCCeEEEecCCCCCcc----c-ccccCcc----cceeEEeecccccCCC-ccceeccc---
Confidence 46668999999998877777899999999887621 0 0111000 13344444 343 44333332
Q ss_pred CCccceEEEEECCCCcEEEEEecCCCCCCCCCccceEECCCCcEEEEeCCCCeEEEEcC-CCceEEEe-------c----
Q 020019 120 GNKYSAVAAYDLSTWNRLFLTQLSGPSDGKSCADDVTVDAEGNAYVTDVTGSKIWKVGV-KGEFLSII-------S---- 187 (332)
Q Consensus 120 ~~~~~~l~~~d~~~g~~~~~~~l~~~~~~~~~~ndiavd~dG~lyvtd~~~~~I~~v~~-~g~~~~~~-------~---- 187 (332)
+.+.+.+||.+.++.+. .+.+. ......+....+| +..+-+....|-..+. +|+..+.+ +
T Consensus 225 --kDg~vrIWd~~~~~~~~--~lsgH---T~~VTCvrwGG~g-liySgS~DrtIkvw~a~dG~~~r~lkGHahwvN~lal 296 (480)
T KOG0271|consen 225 --KDGSVRIWDTKLGTCVR--TLSGH---TASVTCVRWGGEG-LIYSGSQDRTIKVWRALDGKLCRELKGHAHWVNHLAL 296 (480)
T ss_pred --CCCCEEEEEccCceEEE--EeccC---ccceEEEEEcCCc-eEEecCCCceEEEEEccchhHHHhhcccchheeeeec
Confidence 45678899998776553 33221 1233446666565 5555566665555443 25432211 0
Q ss_pred -------CCCCCCccc---------ccCccccCeEEEccCceEEEEeCCCCeEEEEeCCCCCCccceeEEEEecCCCCCC
Q 020019 188 -------SPLFTPKEW---------YKNLVGLNGIVYHPDGFLIVIHTFSGNLFKIDIVDGVGEGEEIKLIRVAGGPLSF 251 (332)
Q Consensus 188 -------~~~~~~p~~---------~~~~~~~nGi~~~~dG~Lyva~~~~~~i~~id~~~~~~~~~~~~~v~~~g~~~~~ 251 (332)
...|..... ...+...+-++ ...|+-.|+-.+...++-+++...+ +.+.+. -| +...
T Consensus 297 sTdy~LRtgaf~~t~~~~~~~se~~~~Al~rY~~~~-~~~~erlVSgsDd~tlflW~p~~~k---kpi~rm--tg-Hq~l 369 (480)
T KOG0271|consen 297 STDYVLRTGAFDHTGRKPKSFSEEQKKALERYEAVL-KDSGERLVSGSDDFTLFLWNPFKSK---KPITRM--TG-HQAL 369 (480)
T ss_pred cchhhhhccccccccccCCChHHHHHHHHHHHHHhh-ccCcceeEEecCCceEEEecccccc---cchhhh--hc-hhhh
Confidence 011110000 00000111111 1123566777778888877766321 122211 11 2344
Q ss_pred CCeEEEeCCCeEEEEeCC--ceEEEEcCCCceEEEEEeeecCCCcccceEEEE-ECCeEEEE
Q 020019 252 GDGLELLSPTKLVVAGNP--SARLVESSDGWETAAVVAKFSGPVHRLATAATV-KDGRVYLN 310 (332)
Q Consensus 252 pdGi~~~~dG~l~va~~~--~~~~v~~~dg~~~~~~~~~~~~~~~~~pt~va~-~~g~lyv~ 310 (332)
..-+.+.|||+++++... +.++-.-.+| +.+..+++ -...-..+++ .+-||.|+
T Consensus 370 Vn~V~fSPd~r~IASaSFDkSVkLW~g~tG----k~lasfRG-Hv~~VYqvawsaDsRLlVS 426 (480)
T KOG0271|consen 370 VNHVSFSPDGRYIASASFDKSVKLWDGRTG----KFLASFRG-HVAAVYQVAWSADSRLLVS 426 (480)
T ss_pred eeeEEECCCccEEEEeecccceeeeeCCCc----chhhhhhh-ccceeEEEEeccCccEEEE
Confidence 567889999877666533 2232233344 55554442 1222244677 56677764
|
|
| >KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown] | Back alignment and domain information |
|---|
Probab=96.01 E-value=1.6 Score=42.15 Aligned_cols=139 Identities=15% Similarity=0.245 Sum_probs=84.3
Q ss_pred ccceEEEeCCCCeEEEEEeCcCCCccceEEEEECCCCcEEEEEecCCCCCCCCCccceEECCCCcEEEEeCCCCeEEEEc
Q 020019 98 GSLGLVLDHPRNRLLVVAADVFGNKYSAVAAYDLSTWNRLFLTQLSGPSDGKSCADDVTVDAEGNAYVTDVTGSKIWKVG 177 (332)
Q Consensus 98 ~~~gi~vd~~~g~l~v~~~~~~~~~~~~l~~~d~~~g~~~~~~~l~~~~~~~~~~ndiavd~dG~lyvtd~~~~~I~~v~ 177 (332)
...|++.+++ ..+|+.... ...+..|+ ..++++...+..|. ....++|-| ....-+..|+-+.+|
T Consensus 370 elwgla~hps-~~q~~T~gq-----dk~v~lW~--~~k~~wt~~~~d~~------~~~~fhpsg-~va~Gt~~G~w~V~d 434 (626)
T KOG2106|consen 370 ELWGLATHPS-KNQLLTCGQ-----DKHVRLWN--DHKLEWTKIIEDPA------ECADFHPSG-VVAVGTATGRWFVLD 434 (626)
T ss_pred ceeeEEcCCC-hhheeeccC-----cceEEEcc--CCceeEEEEecCce------eEeeccCcc-eEEEeeccceEEEEe
Confidence 5789999997 555665542 23466677 45777766664343 247788888 666667778888888
Q ss_pred CCCceEEEecCCCCCCcccccCccccCeEEEccCc-eEEEEeCCCCeE--EEEeCCCCCCccceeEEEE-ecCCCCCCCC
Q 020019 178 VKGEFLSIISSPLFTPKEWYKNLVGLNGIVYHPDG-FLIVIHTFSGNL--FKIDIVDGVGEGEEIKLIR-VAGGPLSFGD 253 (332)
Q Consensus 178 ~~g~~~~~~~~~~~~~p~~~~~~~~~nGi~~~~dG-~Lyva~~~~~~i--~~id~~~~~~~~~~~~~v~-~~g~~~~~pd 253 (332)
.+.+........ ....+-+.++||| .|-++.. ++.| ||++.... ...++. -.| ....
T Consensus 435 ~e~~~lv~~~~d----------~~~ls~v~ysp~G~~lAvgs~-d~~iyiy~Vs~~g~-----~y~r~~k~~g---s~it 495 (626)
T KOG2106|consen 435 TETQDLVTIHTD----------NEQLSVVRYSPDGAFLAVGSH-DNHIYIYRVSANGR-----KYSRVGKCSG---SPIT 495 (626)
T ss_pred cccceeEEEEec----------CCceEEEEEcCCCCEEEEecC-CCeEEEEEECCCCc-----EEEEeeeecC---ceeE
Confidence 775433222211 1235789999999 6666654 5555 56655533 233332 122 2234
Q ss_pred eEEEeCCCeEEEEeCCc
Q 020019 254 GLELLSPTKLVVAGNPS 270 (332)
Q Consensus 254 Gi~~~~dG~l~va~~~~ 270 (332)
-+...+|++.++++...
T Consensus 496 hLDwS~Ds~~~~~~S~d 512 (626)
T KOG2106|consen 496 HLDWSSDSQFLVSNSGD 512 (626)
T ss_pred EeeecCCCceEEeccCc
Confidence 55666888888887544
|
|
| >PRK13616 lipoprotein LpqB; Provisional | Back alignment and domain information |
|---|
Probab=95.97 E-value=0.99 Score=45.53 Aligned_cols=143 Identities=13% Similarity=0.102 Sum_probs=69.4
Q ss_pred CCccceEECCCCc--EEEEe------CCCCeEEEEcCCCceEEEecCCCCCCcccccCccccCeEEEccCc-eEEEEeCC
Q 020019 150 SCADDVTVDAEGN--AYVTD------VTGSKIWKVGVKGEFLSIISSPLFTPKEWYKNLVGLNGIVYHPDG-FLIVIHTF 220 (332)
Q Consensus 150 ~~~ndiavd~dG~--lyvtd------~~~~~I~~v~~~g~~~~~~~~~~~~~p~~~~~~~~~nGi~~~~dG-~Lyva~~~ 220 (332)
......++.+||+ +|+.. .....||..+.+|....+.....+.. -.|+||| .||+....
T Consensus 350 ~~vsspaiSpdG~~vA~v~~~~~~~~d~~s~Lwv~~~gg~~~~lt~g~~~t~------------PsWspDG~~lw~v~dg 417 (591)
T PRK13616 350 GNITSAALSRSGRQVAAVVTLGRGAPDPASSLWVGPLGGVAVQVLEGHSLTR------------PSWSLDADAVWVVVDG 417 (591)
T ss_pred cCcccceECCCCCEEEEEEeecCCCCCcceEEEEEeCCCcceeeecCCCCCC------------ceECCCCCceEEEecC
Confidence 4678899999985 45552 23457888887665544332222223 3688987 77776432
Q ss_pred CCeEEEEeCCCCCCccceeEEEEecCC----C-CCCCCeEEEeCCCe-EEEEeCCceE---EEEcCCCceEEEEEeeec-
Q 020019 221 SGNLFKIDIVDGVGEGEEIKLIRVAGG----P-LSFGDGLELLSPTK-LVVAGNPSAR---LVESSDGWETAAVVAKFS- 290 (332)
Q Consensus 221 ~~~i~~id~~~~~~~~~~~~~v~~~g~----~-~~~pdGi~~~~dG~-l~va~~~~~~---~v~~~dg~~~~~~~~~~~- 290 (332)
+++.++.-..++ ..+..+.+.+. . -..+..+.+.+||+ +.+.-..... +++..+| . .++.....
T Consensus 418 -~~~~~v~~~~~~---gql~~~~vd~ge~~~~~~g~Issl~wSpDG~RiA~i~~g~v~Va~Vvr~~~G-~-~~l~~~~~l 491 (591)
T PRK13616 418 -NTVVRVIRDPAT---GQLARTPVDASAVASRVPGPISELQLSRDGVRAAMIIGGKVYLAVVEQTEDG-Q-YALTNPREV 491 (591)
T ss_pred -cceEEEeccCCC---ceEEEEeccCchhhhccCCCcCeEEECCCCCEEEEEECCEEEEEEEEeCCCC-c-eeecccEEe
Confidence 223333221110 01211111110 0 12356677777766 3332222222 2444556 2 23322111
Q ss_pred CCCccc-ceEEEE-ECCeEEEE
Q 020019 291 GPVHRL-ATAATV-KDGRVYLN 310 (332)
Q Consensus 291 ~~~~~~-pt~va~-~~g~lyv~ 310 (332)
.+.+.. ++.+.+ .+++|+|.
T Consensus 492 ~~~l~~~~~~l~W~~~~~L~V~ 513 (591)
T PRK13616 492 GPGLGDTAVSLDWRTGDSLVVG 513 (591)
T ss_pred ecccCCccccceEecCCEEEEE
Confidence 122333 467778 78888874
|
|
| >KOG1273 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=95.95 E-value=0.99 Score=41.10 Aligned_cols=156 Identities=14% Similarity=0.154 Sum_probs=94.4
Q ss_pred cceEEcCCCCEEEEEecCCeEEEEECCCCCCCccceeeeEEecccCcCCCccceEEEeCCCCeEE-EEEeCcCCCccceE
Q 020019 48 ECAKWDDSGRRFIVSFLDGGIGQVAVPDDYPPGTVLEEVTLVKDLELTGNGSLGLVLDHPRNRLL-VVAADVFGNKYSAV 126 (332)
Q Consensus 48 egia~d~~g~~~~~~~~~g~I~~vd~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~vd~~~g~l~-v~~~~~~~~~~~~l 126 (332)
.++.|+++|+.++++..+..|.-+|.-.+.. ..+..+ +. ...+...+|.+.+.. ++... ....+
T Consensus 69 ~sl~WS~dgr~LltsS~D~si~lwDl~~gs~----l~rirf---~s----pv~~~q~hp~k~n~~va~~~~----~sp~v 133 (405)
T KOG1273|consen 69 TSLCWSRDGRKLLTSSRDWSIKLWDLLKGSP----LKRIRF---DS----PVWGAQWHPRKRNKCVATIME----ESPVV 133 (405)
T ss_pred eEEEecCCCCEeeeecCCceeEEEeccCCCc----eeEEEc---cC----ccceeeeccccCCeEEEEEec----CCcEE
Confidence 5789999999999998888999999876652 332222 11 345667777544444 44443 12344
Q ss_pred EEEECCCCcEEEEEecCCCCCCCCCccceEECCCCcEEEEeCCCCeEEEEcCCCceEE-EecCCCCCCcccccCccccCe
Q 020019 127 AAYDLSTWNRLFLTQLSGPSDGKSCADDVTVDAEGNAYVTDVTGSKIWKVGVKGEFLS-IISSPLFTPKEWYKNLVGLNG 205 (332)
Q Consensus 127 ~~~d~~~g~~~~~~~l~~~~~~~~~~ndiavd~dG~lyvtd~~~~~I~~v~~~g~~~~-~~~~~~~~~p~~~~~~~~~nG 205 (332)
..|+... ........+.+-...+....+|+.|+..++-+..|.+..++.+..-.+ ...-.. .....-
T Consensus 134 i~~s~~~---h~~Lp~d~d~dln~sas~~~fdr~g~yIitGtsKGkllv~~a~t~e~vas~rits---------~~~IK~ 201 (405)
T KOG1273|consen 134 IDFSDPK---HSVLPKDDDGDLNSSASHGVFDRRGKYIITGTSKGKLLVYDAETLECVASFRITS---------VQAIKQ 201 (405)
T ss_pred EEecCCc---eeeccCCCccccccccccccccCCCCEEEEecCcceEEEEecchheeeeeeeech---------heeeeE
Confidence 4454321 112233322332345555689999998888888899999987743211 111000 123457
Q ss_pred EEEccCceEEEEeCCCCeEEEEeCC
Q 020019 206 IVYHPDGFLIVIHTFSGNLFKIDIV 230 (332)
Q Consensus 206 i~~~~dG~Lyva~~~~~~i~~id~~ 230 (332)
|.++..|..++.++..+.|..++.+
T Consensus 202 I~~s~~g~~liiNtsDRvIR~ye~~ 226 (405)
T KOG1273|consen 202 IIVSRKGRFLIINTSDRVIRTYEIS 226 (405)
T ss_pred EEEeccCcEEEEecCCceEEEEehh
Confidence 8899999777778877766666554
|
|
| >KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown] | Back alignment and domain information |
|---|
Probab=95.94 E-value=1.4 Score=40.83 Aligned_cols=156 Identities=11% Similarity=0.057 Sum_probs=92.8
Q ss_pred cccceEEcCCCCEEEEEecCCeEEEEECCCCCCCccceeeeEEecccCcCCCccceEEEeCCCCeEEEEEeCcCCCccce
Q 020019 46 FRECAKWDDSGRRFIVSFLDGGIGQVAVPDDYPPGTVLEEVTLVKDLELTGNGSLGLVLDHPRNRLLVVAADVFGNKYSA 125 (332)
Q Consensus 46 ~pegia~d~~g~~~~~~~~~g~I~~vd~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~vd~~~g~l~v~~~~~~~~~~~~ 125 (332)
....++.+|+.++..+.-.+..-+.++..++... - ++... ..++..+.+..+ |. |++.+++ .++
T Consensus 66 svFavsl~P~~~l~aTGGgDD~AflW~~~~ge~~----~--eltgH----KDSVt~~~Fshd-gt-lLATGdm----sG~ 129 (399)
T KOG0296|consen 66 SVFAVSLHPNNNLVATGGGDDLAFLWDISTGEFA----G--ELTGH----KDSVTCCSFSHD-GT-LLATGDM----SGK 129 (399)
T ss_pred ceEEEEeCCCCceEEecCCCceEEEEEccCCcce----e--EecCC----CCceEEEEEccC-ce-EEEecCC----Ccc
Confidence 3345778886555555455566566665666531 1 12111 126677888876 77 5555554 367
Q ss_pred EEEEECCCCcEEEEEecCCCCCCCCCccceEECCCCcEEEEeCCCCeEEEEcCCC-ceEEEecCCCCCCcccccCccccC
Q 020019 126 VAAYDLSTWNRLFLTQLSGPSDGKSCADDVTVDAEGNAYVTDVTGSKIWKVGVKG-EFLSIISSPLFTPKEWYKNLVGLN 204 (332)
Q Consensus 126 l~~~d~~~g~~~~~~~l~~~~~~~~~~ndiavd~dG~lyvtd~~~~~I~~v~~~g-~~~~~~~~~~~~~p~~~~~~~~~n 204 (332)
|.+|+..+|...+.+.- +. .-.-=+..+|.+.++++-+..|.||.+.... ....+.... ....+
T Consensus 130 v~v~~~stg~~~~~~~~--e~---~dieWl~WHp~a~illAG~~DGsvWmw~ip~~~~~kv~~Gh----------~~~ct 194 (399)
T KOG0296|consen 130 VLVFKVSTGGEQWKLDQ--EV---EDIEWLKWHPRAHILLAGSTDGSVWMWQIPSQALCKVMSGH----------NSPCT 194 (399)
T ss_pred EEEEEcccCceEEEeec--cc---CceEEEEecccccEEEeecCCCcEEEEECCCcceeeEecCC----------CCCcc
Confidence 89999988877654421 11 1112255678888888888888888776543 222222111 11223
Q ss_pred eEEEccCceEEEEeCCCCeEEEEeCCCC
Q 020019 205 GIVYHPDGFLIVIHTFSGNLFKIDIVDG 232 (332)
Q Consensus 205 Gi~~~~dG~Lyva~~~~~~i~~id~~~~ 232 (332)
.=.|.|||....+-+.++.|..+++.++
T Consensus 195 ~G~f~pdGKr~~tgy~dgti~~Wn~ktg 222 (399)
T KOG0296|consen 195 CGEFIPDGKRILTGYDDGTIIVWNPKTG 222 (399)
T ss_pred cccccCCCceEEEEecCceEEEEecCCC
Confidence 3467789944455566889999999988
|
|
| >KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown] | Back alignment and domain information |
|---|
Probab=95.91 E-value=1.4 Score=40.76 Aligned_cols=77 Identities=10% Similarity=0.110 Sum_probs=49.0
Q ss_pred ceEEcCCCCEEEEEecCCeEEEEECCCCCCCccceeeeEEecccCcCCCccceEEEeCCCCeEEEEEeCcCCCccceEEE
Q 020019 49 CAKWDDSGRRFIVSFLDGGIGQVAVPDDYPPGTVLEEVTLVKDLELTGNGSLGLVLDHPRNRLLVVAADVFGNKYSAVAA 128 (332)
Q Consensus 49 gia~d~~g~~~~~~~~~g~I~~vd~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~vd~~~g~l~v~~~~~~~~~~~~l~~ 128 (332)
=+.|+|.+.+++....+|.||.+...++.. . .+.+.... ....=.+-|+ |+..++.-+ .+.|.+
T Consensus 153 Wl~WHp~a~illAG~~DGsvWmw~ip~~~~-----~--kv~~Gh~~---~ct~G~f~pd-GKr~~tgy~-----dgti~~ 216 (399)
T KOG0296|consen 153 WLKWHPRAHILLAGSTDGSVWMWQIPSQAL-----C--KVMSGHNS---PCTCGEFIPD-GKRILTGYD-----DGTIIV 216 (399)
T ss_pred EEEecccccEEEeecCCCcEEEEECCCcce-----e--eEecCCCC---CcccccccCC-CceEEEEec-----CceEEE
Confidence 367899999888888899999998876441 1 34432221 1222345565 554443322 356899
Q ss_pred EECCCCcEEEEEe
Q 020019 129 YDLSTWNRLFLTQ 141 (332)
Q Consensus 129 ~d~~~g~~~~~~~ 141 (332)
|+++++++.....
T Consensus 217 Wn~ktg~p~~~~~ 229 (399)
T KOG0296|consen 217 WNPKTGQPLHKIT 229 (399)
T ss_pred EecCCCceeEEec
Confidence 9999999876544
|
|
| >smart00135 LY Low-density lipoprotein-receptor YWTD domain | Back alignment and domain information |
|---|
Probab=95.90 E-value=0.023 Score=35.33 Aligned_cols=32 Identities=13% Similarity=-0.174 Sum_probs=28.6
Q ss_pred ccccCeEEEccCc-eEEEEeCCCCeEEEEeCCC
Q 020019 200 LVGLNGIVYHPDG-FLIVIHTFSGNLFKIDIVD 231 (332)
Q Consensus 200 ~~~~nGi~~~~dG-~Lyva~~~~~~i~~id~~~ 231 (332)
...|+||++++.+ .||++|...+.|++.+.++
T Consensus 8 ~~~~~~la~d~~~~~lYw~D~~~~~I~~~~~~g 40 (43)
T smart00135 8 LGHPNGLAVDWIEGRLYWTDWGLDVIEVANLDG 40 (43)
T ss_pred CCCcCEEEEeecCCEEEEEeCCCCEEEEEeCCC
Confidence 4568999999998 9999999999999998874
|
Type "B" repeats in low-density lipoprotein (LDL) receptor that plays a central role in mammalian cholesterol metabolism. Also present in a variety of molecules similar to gp300/megalin. |
| >COG3490 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=95.90 E-value=0.65 Score=41.82 Aligned_cols=150 Identities=17% Similarity=0.159 Sum_probs=85.6
Q ss_pred CCccceEEEeCCCCeEEEEEeCc---CC----Cc------cceEEEEECCCCcEEEEEecCCCCCCCCCccceEECCCCc
Q 020019 96 GNGSLGLVLDHPRNRLLVVAADV---FG----NK------YSAVAAYDLSTWNRLFLTQLSGPSDGKSCADDVTVDAEGN 162 (332)
Q Consensus 96 ~~~~~gi~vd~~~g~l~v~~~~~---~~----~~------~~~l~~~d~~~g~~~~~~~l~~~~~~~~~~ndiavd~dG~ 162 (332)
|.+|.-+.+-+| |++.+..++. .+ .+ ...+...|..+|+++....++. .........+++++||+
T Consensus 161 GiGpHev~lm~D-GrtlvvanGGIethpdfgR~~lNldsMePSlvlld~atG~liekh~Lp~-~l~~lSiRHld~g~dgt 238 (366)
T COG3490 161 GIGPHEVTLMAD-GRTLVVANGGIETHPDFGRTELNLDSMEPSLVLLDAATGNLIEKHTLPA-SLRQLSIRHLDIGRDGT 238 (366)
T ss_pred CcCcceeEEecC-CcEEEEeCCceecccccCccccchhhcCccEEEEeccccchhhhccCch-hhhhcceeeeeeCCCCc
Confidence 357888998886 8877766542 10 00 1235567777788776666631 11235677899999999
Q ss_pred EEEEeCCCC-------eEEEEcCCCceEEEecCCCCCCcccccCc-cccCeEEEccC-ceEEEEeCCCCeEEEEeCCCCC
Q 020019 163 AYVTDVTGS-------KIWKVGVKGEFLSIISSPLFTPKEWYKNL-VGLNGIVYHPD-GFLIVIHTFSGNLFKIDIVDGV 233 (332)
Q Consensus 163 lyvtd~~~~-------~I~~v~~~g~~~~~~~~~~~~~p~~~~~~-~~~nGi~~~~d-G~Lyva~~~~~~i~~id~~~~~ 233 (332)
+|+..-..| -|-.+ ..|+...++..+ +.....+ ...-.|+.+.+ |.+-++....|+...+|.+++.
T Consensus 239 vwfgcQy~G~~~d~ppLvg~~-~~g~~l~~~~~p----ee~~~~~anYigsiA~n~~~glV~lTSP~GN~~vi~da~tG~ 313 (366)
T COG3490 239 VWFGCQYRGPRNDLPPLVGHF-RKGEPLEFLDLP----EEQTAAFANYIGSIAANRRDGLVALTSPRGNRAVIWDAATGA 313 (366)
T ss_pred EEEEEEeeCCCccCCcceeec-cCCCcCcccCCC----HHHHHHHHhhhhheeecccCCeEEEecCCCCeEEEEEcCCCc
Confidence 999864322 12222 233433322111 1100111 13446777654 4777777778888889999882
Q ss_pred CccceeEEEEecCCCCCCCCeEEEeCCC
Q 020019 234 GEGEEIKLIRVAGGPLSFGDGLELLSPT 261 (332)
Q Consensus 234 ~~~~~~~~v~~~g~~~~~pdGi~~~~dG 261 (332)
.+... .+....|++....|
T Consensus 314 ----vv~~a-----~l~daaGva~~~~g 332 (366)
T COG3490 314 ----VVSEA-----ALPDAAGVAAAKGG 332 (366)
T ss_pred ----EEecc-----cccccccceeccCc
Confidence 33322 33344577776654
|
|
| >KOG0283 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=95.87 E-value=0.85 Score=46.14 Aligned_cols=187 Identities=12% Similarity=0.058 Sum_probs=111.0
Q ss_pred ceEEcCCCCEEEEEecCCeEEEEECCCCCCCccceeeeEEecccCcCCCccceEEEeCCCCeEEEEEeCcCCCccceEEE
Q 020019 49 CAKWDDSGRRFIVSFLDGGIGQVAVPDDYPPGTVLEEVTLVKDLELTGNGSLGLVLDHPRNRLLVVAADVFGNKYSAVAA 128 (332)
Q Consensus 49 gia~d~~g~~~~~~~~~g~I~~vd~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~vd~~~g~l~v~~~~~~~~~~~~l~~ 128 (332)
.+.|+..+ +++++.-+.+|--|.+...++ +....+++ -+..++++|.+++.|+. +- -.+++..
T Consensus 374 DlSWSKn~-fLLSSSMDKTVRLWh~~~~~C-------L~~F~Hnd----fVTcVaFnPvDDryFiS-GS----LD~KvRi 436 (712)
T KOG0283|consen 374 DLSWSKNN-FLLSSSMDKTVRLWHPGRKEC-------LKVFSHND----FVTCVAFNPVDDRYFIS-GS----LDGKVRL 436 (712)
T ss_pred ecccccCC-eeEeccccccEEeecCCCcce-------eeEEecCC----eeEEEEecccCCCcEee-cc----cccceEE
Confidence 47788765 555554456666666665554 12333454 46789999987785554 32 2468889
Q ss_pred EECCCCcEEEEEecCCCCCCCCCccceEECCCCcEEEEeCCCCeEEEEcCCCceEEE---ecCCCCCCcccccCccccCe
Q 020019 129 YDLSTWNRLFLTQLSGPSDGKSCADDVTVDAEGNAYVTDVTGSKIWKVGVKGEFLSI---ISSPLFTPKEWYKNLVGLNG 205 (332)
Q Consensus 129 ~d~~~g~~~~~~~l~~~~~~~~~~ndiavd~dG~lyvtd~~~~~I~~v~~~g~~~~~---~~~~~~~~p~~~~~~~~~nG 205 (332)
|+....++....++. -....+++-|||...|.-+.+|....++..|-..+. +...... . . ......|
T Consensus 437 WsI~d~~Vv~W~Dl~------~lITAvcy~PdGk~avIGt~~G~C~fY~t~~lk~~~~~~I~~~~~K-k--~-~~~rITG 506 (712)
T KOG0283|consen 437 WSISDKKVVDWNDLR------DLITAVCYSPDGKGAVIGTFNGYCRFYDTEGLKLVSDFHIRLHNKK-K--K-QGKRITG 506 (712)
T ss_pred eecCcCeeEeehhhh------hhheeEEeccCCceEEEEEeccEEEEEEccCCeEEEeeeEeeccCc-c--c-cCceeee
Confidence 999877776655552 345669999999877766777877777776542221 1111111 0 0 1125789
Q ss_pred EEEccCc--eEEEEeCCCCeEEEEeCCCCCCccceeEEEEecCCCCCCCCeEEEeCCCeEEEEeC
Q 020019 206 IVYHPDG--FLIVIHTFSGNLFKIDIVDGVGEGEEIKLIRVAGGPLSFGDGLELLSPTKLVVAGN 268 (332)
Q Consensus 206 i~~~~dG--~Lyva~~~~~~i~~id~~~~~~~~~~~~~v~~~g~~~~~pdGi~~~~dG~l~va~~ 268 (332)
+-+.|.. .|.|+. +..+|.-||..+.. .+..++.. ......--..+..||+-+|+..
T Consensus 507 ~Q~~p~~~~~vLVTS-nDSrIRI~d~~~~~----lv~KfKG~-~n~~SQ~~Asfs~Dgk~IVs~s 565 (712)
T KOG0283|consen 507 LQFFPGDPDEVLVTS-NDSRIRIYDGRDKD----LVHKFKGF-RNTSSQISASFSSDGKHIVSAS 565 (712)
T ss_pred eEecCCCCCeEEEec-CCCceEEEeccchh----hhhhhccc-ccCCcceeeeEccCCCEEEEee
Confidence 9988765 588764 56678888885431 23323211 1222334455666777666653
|
|
| >KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=95.83 E-value=1.3 Score=39.53 Aligned_cols=189 Identities=14% Similarity=0.129 Sum_probs=106.6
Q ss_pred ccceEEEeCCCCeEEEEEeCcCCCccceEEEEECCC-------CcEEEEEecCCCCCCCCCccceEECCCCcEEEEeCCC
Q 020019 98 GSLGLVLDHPRNRLLVVAADVFGNKYSAVAAYDLST-------WNRLFLTQLSGPSDGKSCADDVTVDAEGNAYVTDVTG 170 (332)
Q Consensus 98 ~~~gi~vd~~~g~l~v~~~~~~~~~~~~l~~~d~~~-------g~~~~~~~l~~~~~~~~~~ndiavd~dG~lyvtd~~~ 170 (332)
.+.++.++.. |++.++..+..--..+.|..||.+. .++...+.. | .+.++-...++-|...|+--..
T Consensus 95 ~Vk~~~F~~~-gn~~l~~tD~~mg~~~~v~~fdi~~~~~~~~s~ep~~kI~t--~---~skit~a~Wg~l~~~ii~Ghe~ 168 (327)
T KOG0643|consen 95 PVKRVDFSFG-GNLILASTDKQMGYTCFVSVFDIRDDSSDIDSEEPYLKIPT--P---DSKITSALWGPLGETIIAGHED 168 (327)
T ss_pred eeEEEeeccC-CcEEEEEehhhcCcceEEEEEEccCChhhhcccCceEEecC--C---ccceeeeeecccCCEEEEecCC
Confidence 4578888886 7766665542101245677888762 222222222 1 2567778889999888887788
Q ss_pred CeEEEEcCC-CceEEEecCCCCCCcccccCccccCeEEEccCceEEEEeCCCCeEEEEeCCCCCCccceeEEEEecCCCC
Q 020019 171 SKIWKVGVK-GEFLSIISSPLFTPKEWYKNLVGLNGIVYHPDGFLIVIHTFSGNLFKIDIVDGVGEGEEIKLIRVAGGPL 249 (332)
Q Consensus 171 ~~I~~v~~~-g~~~~~~~~~~~~~p~~~~~~~~~nGi~~~~dG~Lyva~~~~~~i~~id~~~~~~~~~~~~~v~~~g~~~ 249 (332)
|.|.++|.. |+... ++... .....|.|.+++|.+.+++-....+---+|..+- +.++.+... .++
T Consensus 169 G~is~~da~~g~~~v--~s~~~-------h~~~Ind~q~s~d~T~FiT~s~Dttakl~D~~tl----~v~Kty~te-~Pv 234 (327)
T KOG0643|consen 169 GSISIYDARTGKELV--DSDEE-------HSSKINDLQFSRDRTYFITGSKDTTAKLVDVRTL----EVLKTYTTE-RPV 234 (327)
T ss_pred CcEEEEEcccCceee--echhh-------hccccccccccCCcceEEecccCccceeeeccce----eeEEEeeec-ccc
Confidence 999999976 44332 11110 1235789999999999998876665555777654 244545443 232
Q ss_pred CCCCeEEEeCCCeEEEEe-CCceEEEEcCCCceEEEEEee---------ec-CCCcccc-eEEEE-ECCeEEEE
Q 020019 250 SFGDGLELLSPTKLVVAG-NPSARLVESSDGWETAAVVAK---------FS-GPVHRLA-TAATV-KDGRVYLN 310 (332)
Q Consensus 250 ~~pdGi~~~~dG~l~va~-~~~~~~v~~~dg~~~~~~~~~---------~~-~~~~~~p-t~va~-~~g~lyv~ 310 (332)
+..++.|-....|.. .+..+-|-.-+. +.++...+ +. ..++-.| .++++ .+|+.|-+
T Consensus 235 ---N~aaisP~~d~VilgGGqeA~dVTTT~~-r~GKFEArFyh~i~eEEigrvkGHFGPINsvAfhPdGksYsS 304 (327)
T KOG0643|consen 235 ---NTAAISPLLDHVILGGGQEAMDVTTTST-RAGKFEARFYHLIFEEEIGRVKGHFGPINSVAFHPDGKSYSS 304 (327)
T ss_pred ---cceecccccceEEecCCceeeeeeeecc-cccchhhhHHHHHHHHHhccccccccCcceeEECCCCccccc
Confidence 345666654444443 333332222222 22222111 11 1122233 56888 88888864
|
|
| >smart00135 LY Low-density lipoprotein-receptor YWTD domain | Back alignment and domain information |
|---|
Probab=95.82 E-value=0.02 Score=35.60 Aligned_cols=33 Identities=21% Similarity=0.129 Sum_probs=29.3
Q ss_pred CCCccceEECCCC-cEEEEeCCCCeEEEEcCCCc
Q 020019 149 KSCADDVTVDAEG-NAYVTDVTGSKIWKVGVKGE 181 (332)
Q Consensus 149 ~~~~ndiavd~dG-~lyvtd~~~~~I~~v~~~g~ 181 (332)
...|+++++|+.+ ++|.+|+....|++.+.+|.
T Consensus 8 ~~~~~~la~d~~~~~lYw~D~~~~~I~~~~~~g~ 41 (43)
T smart00135 8 LGHPNGLAVDWIEGRLYWTDWGLDVIEVANLDGT 41 (43)
T ss_pred CCCcCEEEEeecCCEEEEEeCCCCEEEEEeCCCC
Confidence 5789999999985 69999999999999998875
|
Type "B" repeats in low-density lipoprotein (LDL) receptor that plays a central role in mammalian cholesterol metabolism. Also present in a variety of molecules similar to gp300/megalin. |
| >KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=95.81 E-value=0.64 Score=44.78 Aligned_cols=221 Identities=15% Similarity=0.164 Sum_probs=122.8
Q ss_pred CccccceEEcCCCCEEEEEecCCeEEEEECCCCCCCccceeeeEEecccCcCCCccceEEEeCCCCeEEEEEeCcCCCcc
Q 020019 44 SFFRECAKWDDSGRRFIVSFLDGGIGQVAVPDDYPPGTVLEEVTLVKDLELTGNGSLGLVLDHPRNRLLVVAADVFGNKY 123 (332)
Q Consensus 44 ~~~pegia~d~~g~~~~~~~~~g~I~~vd~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~vd~~~g~l~v~~~~~~~~~~ 123 (332)
+.|....-..+||+.+++.-...+|..||...-+. .+-......+-..+.+++.+|....|.|..+
T Consensus 465 dnyiRSckL~pdgrtLivGGeastlsiWDLAapTp--------rikaeltssapaCyALa~spDakvcFsccsd------ 530 (705)
T KOG0639|consen 465 DNYIRSCKLLPDGRTLIVGGEASTLSIWDLAAPTP--------RIKAELTSSAPACYALAISPDAKVCFSCCSD------ 530 (705)
T ss_pred ccceeeeEecCCCceEEeccccceeeeeeccCCCc--------chhhhcCCcchhhhhhhcCCccceeeeeccC------
Confidence 34666788899999887774467788888764331 1111111111245788999985666666653
Q ss_pred ceEEEEECCCCcEEEEEecCCCCCCCCCccceEECCCCc-EEEEeCCCCeEEEEcCC-CceEEEecCCCCCCcccccCcc
Q 020019 124 SAVAAYDLSTWNRLFLTQLSGPSDGKSCADDVTVDAEGN-AYVTDVTGSKIWKVGVK-GEFLSIISSPLFTPKEWYKNLV 201 (332)
Q Consensus 124 ~~l~~~d~~~g~~~~~~~l~~~~~~~~~~ndiavd~dG~-lyvtd~~~~~I~~v~~~-g~~~~~~~~~~~~~p~~~~~~~ 201 (332)
+.|.+||+.+..+++ ++.+.. -....|.+.+||. || |-...+.|...|.. |+...- ..|. .
T Consensus 531 GnI~vwDLhnq~~Vr--qfqGht---DGascIdis~dGtklW-TGGlDntvRcWDlregrqlqq---hdF~--------S 593 (705)
T KOG0639|consen 531 GNIAVWDLHNQTLVR--QFQGHT---DGASCIDISKDGTKLW-TGGLDNTVRCWDLREGRQLQQ---HDFS--------S 593 (705)
T ss_pred CcEEEEEcccceeee--cccCCC---CCceeEEecCCCceee-cCCCccceeehhhhhhhhhhh---hhhh--------h
Confidence 568999998765543 453322 2344588888885 55 44456777777754 332211 1121 1
Q ss_pred ccCeEEEccCc-eEEEEeCCCCeEEEEeCCCCCCccceeEEEEecCCCCCCCCeEEEeCCCeEEEEeCCc--eEEEEcCC
Q 020019 202 GLNGIVYHPDG-FLIVIHTFSGNLFKIDIVDGVGEGEEIKLIRVAGGPLSFGDGLELLSPTKLVVAGNPS--ARLVESSD 278 (332)
Q Consensus 202 ~~nGi~~~~dG-~Lyva~~~~~~i~~id~~~~~~~~~~~~~v~~~g~~~~~pdGi~~~~dG~l~va~~~~--~~~v~~~d 278 (332)
....+-..|.| +|.|. +.++.++....... .. ..+. ..-+..=.+.|..-|+.||+..-. ...-+.+-
T Consensus 594 QIfSLg~cP~~dWlavG-Mens~vevlh~skp-----~k--yqlh-lheScVLSlKFa~cGkwfvStGkDnlLnawrtPy 664 (705)
T KOG0639|consen 594 QIFSLGYCPTGDWLAVG-MENSNVEVLHTSKP-----EK--YQLH-LHESCVLSLKFAYCGKWFVSTGKDNLLNAWRTPY 664 (705)
T ss_pred hheecccCCCccceeee-cccCcEEEEecCCc-----cc--eeec-ccccEEEEEEecccCceeeecCchhhhhhccCcc
Confidence 23456677888 77775 45666776665533 11 1211 111223357778889999996321 11225677
Q ss_pred CceEEEEEeeecCCCcccceEEEE-ECCeEEEE
Q 020019 279 GWETAAVVAKFSGPVHRLATAATV-KDGRVYLN 310 (332)
Q Consensus 279 g~~~~~~~~~~~~~~~~~pt~va~-~~g~lyv~ 310 (332)
|. .+... ++..--.++-+ .++++.|+
T Consensus 665 Ga---siFqs---kE~SsVlsCDIS~ddkyIVT 691 (705)
T KOG0639|consen 665 GA---SIFQS---KESSSVLSCDISFDDKYIVT 691 (705)
T ss_pred cc---ceeec---cccCcceeeeeccCceEEEe
Confidence 73 23322 11222245666 55555554
|
|
| >KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=95.77 E-value=0.1 Score=49.95 Aligned_cols=190 Identities=12% Similarity=0.056 Sum_probs=108.4
Q ss_pred EEEecCCccccceEEcCCCCEEEEEecCCeEEEEECCCCCCCccceeeeEEecccCcCCCccceEEEeCCCCeEEEEEeC
Q 020019 38 YHYHSSSFFRECAKWDDSGRRFIVSFLDGGIGQVAVPDDYPPGTVLEEVTLVKDLELTGNGSLGLVLDHPRNRLLVVAAD 117 (332)
Q Consensus 38 i~~~~~~~~pegia~d~~g~~~~~~~~~g~I~~vd~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~vd~~~g~l~v~~~~ 117 (332)
.+++..+.....+++++|.++.|+...+|.|..||..+... . +.+...+ .+...|.+.++.-+||....
T Consensus 503 aeltssapaCyALa~spDakvcFsccsdGnI~vwDLhnq~~----V--rqfqGht----DGascIdis~dGtklWTGGl- 571 (705)
T KOG0639|consen 503 AELTSSAPACYALAISPDAKVCFSCCSDGNIAVWDLHNQTL----V--RQFQGHT----DGASCIDISKDGTKLWTGGL- 571 (705)
T ss_pred hhcCCcchhhhhhhcCCccceeeeeccCCcEEEEEccccee----e--ecccCCC----CCceeEEecCCCceeecCCC-
Confidence 33455555556789999999999998899999999986542 1 1333222 26778888887446887644
Q ss_pred cCCCccceEEEEECCCCcEEEEEecCCCCCCCCCccceEECCCCcEEEEeCCCCeEEEEcCCCc--eEEEecCCCCCCcc
Q 020019 118 VFGNKYSAVAAYDLSTWNRLFLTQLSGPSDGKSCADDVTVDAEGNAYVTDVTGSKIWKVGVKGE--FLSIISSPLFTPKE 195 (332)
Q Consensus 118 ~~~~~~~~l~~~d~~~g~~~~~~~l~~~~~~~~~~ndiavd~dG~lyvtd~~~~~I~~v~~~g~--~~~~~~~~~~~~p~ 195 (332)
.+.+..||++.+......++... .|. +-.-|.|.....-..++.++.+...+. ....... .
T Consensus 572 -----DntvRcWDlregrqlqqhdF~SQ----IfS--Lg~cP~~dWlavGMens~vevlh~skp~kyqlhlhe-S----- 634 (705)
T KOG0639|consen 572 -----DNTVRCWDLREGRQLQQHDFSSQ----IFS--LGYCPTGDWLAVGMENSNVEVLHTSKPEKYQLHLHE-S----- 634 (705)
T ss_pred -----ccceeehhhhhhhhhhhhhhhhh----hee--cccCCCccceeeecccCcEEEEecCCccceeecccc-c-----
Confidence 35788999998876555555321 111 112345543333344555555554432 2211111 1
Q ss_pred cccCccccCeEEEccCceEEEEeCCCCeEEEEeCCCCCCccceeEEEEecCCCCCCCCeEEEeCCCeEEEEeCC
Q 020019 196 WYKNLVGLNGIVYHPDGFLIVIHTFSGNLFKIDIVDGVGEGEEIKLIRVAGGPLSFGDGLELLSPTKLVVAGNP 269 (332)
Q Consensus 196 ~~~~~~~~nGi~~~~dG~Lyva~~~~~~i~~id~~~~~~~~~~~~~v~~~g~~~~~pdGi~~~~dG~l~va~~~ 269 (332)
-.-.+.|.+-|..||+..-.+-+-.+....|. .+ +..+ +.+..-...+..|.+++|++.+
T Consensus 635 ------cVLSlKFa~cGkwfvStGkDnlLnawrtPyGa----si--Fqsk--E~SsVlsCDIS~ddkyIVTGSG 694 (705)
T KOG0639|consen 635 ------CVLSLKFAYCGKWFVSTGKDNLLNAWRTPYGA----SI--FQSK--ESSSVLSCDISFDDKYIVTGSG 694 (705)
T ss_pred ------EEEEEEecccCceeeecCchhhhhhccCcccc----ce--eecc--ccCcceeeeeccCceEEEecCC
Confidence 12256788888888877666654333333331 22 2322 2233333445567788888654
|
|
| >KOG2048 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=95.64 E-value=0.65 Score=46.09 Aligned_cols=162 Identities=14% Similarity=0.174 Sum_probs=96.3
Q ss_pred cceEEcCCCCEEEEE-ecCCeEEEEECCCCCCCccceeeeEEecccCcCCCccceEEEeCCCCeEEEEEeCcCCCccceE
Q 020019 48 ECAKWDDSGRRFIVS-FLDGGIGQVAVPDDYPPGTVLEEVTLVKDLELTGNGSLGLVLDHPRNRLLVVAADVFGNKYSAV 126 (332)
Q Consensus 48 egia~d~~g~~~~~~-~~~g~I~~vd~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~vd~~~g~l~v~~~~~~~~~~~~l 126 (332)
..-+++|+|++...+ ..+=+||++.++... .. ..+-..|... .....+.+.-+.+.++++..+ ...+
T Consensus 386 s~~aiSPdg~~Ia~st~~~~~iy~L~~~~~v-----k~-~~v~~~~~~~-~~a~~i~ftid~~k~~~~s~~-----~~~l 453 (691)
T KOG2048|consen 386 SCAAISPDGNLIAISTVSRTKIYRLQPDPNV-----KV-INVDDVPLAL-LDASAISFTIDKNKLFLVSKN-----IFSL 453 (691)
T ss_pred eeeccCCCCCEEEEeeccceEEEEeccCcce-----eE-EEeccchhhh-ccceeeEEEecCceEEEEecc-----ccee
Confidence 346789999988655 667789999987532 11 1222122211 122333333333667776642 3457
Q ss_pred EEEECCCCcEEEEEecCCCCCCCCCccceEECCCCcEEEEeCCCCeEEEEcCCCceEEEecCCCCCCcccccCccccCeE
Q 020019 127 AAYDLSTWNRLFLTQLSGPSDGKSCADDVTVDAEGNAYVTDVTGSKIWKVGVKGEFLSIISSPLFTPKEWYKNLVGLNGI 206 (332)
Q Consensus 127 ~~~d~~~g~~~~~~~l~~~~~~~~~~ndiavd~dG~lyvtd~~~~~I~~v~~~g~~~~~~~~~~~~~p~~~~~~~~~nGi 206 (332)
..++.++...+....+.. .......+-+++.++|+.+.+-+..+.|+.++..++....+.. .+. ......
T Consensus 454 e~~el~~ps~kel~~~~~-~~~~~~I~~l~~SsdG~yiaa~~t~g~I~v~nl~~~~~~~l~~-rln--------~~vTa~ 523 (691)
T KOG2048|consen 454 EEFELETPSFKELKSIQS-QAKCPSISRLVVSSDGNYIAAISTRGQIFVYNLETLESHLLKV-RLN--------IDVTAA 523 (691)
T ss_pred EEEEecCcchhhhhcccc-ccCCCcceeEEEcCCCCEEEEEeccceEEEEEcccceeecchh-ccC--------cceeee
Confidence 777777655443334321 1234677789999999877666688999999998765443321 110 112344
Q ss_pred EEccCc--eEEEEeCCCCeEEEEeCCCC
Q 020019 207 VYHPDG--FLIVIHTFSGNLFKIDIVDG 232 (332)
Q Consensus 207 ~~~~dG--~Lyva~~~~~~i~~id~~~~ 232 (332)
++.|.- +|.|+. .+++++.++.+..
T Consensus 524 ~~~~~~~~~lvvat-s~nQv~efdi~~~ 550 (691)
T KOG2048|consen 524 AFSPFVRNRLVVAT-SNNQVFEFDIEAR 550 (691)
T ss_pred eccccccCcEEEEe-cCCeEEEEecchh
Confidence 555443 777765 5778999998643
|
|
| >KOG0293 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=95.61 E-value=0.78 Score=43.14 Aligned_cols=181 Identities=14% Similarity=0.131 Sum_probs=109.5
Q ss_pred ceEEcCCCCEEEEE-ecC--CeEEEEECCCCCCCccceeeeEEecccCcCCCccceEEEeCCCCeEEEEEeCcCCCccce
Q 020019 49 CAKWDDSGRRFIVS-FLD--GGIGQVAVPDDYPPGTVLEEVTLVKDLELTGNGSLGLVLDHPRNRLLVVAADVFGNKYSA 125 (332)
Q Consensus 49 gia~d~~g~~~~~~-~~~--g~I~~vd~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~vd~~~g~l~v~~~~~~~~~~~~ 125 (332)
-+.++++|+ |+.+ ..+ .-|+.+..+.. .. ... ++.... ..+.-|...||+..|..|.. ...
T Consensus 229 fl~FS~nGk-yLAsaSkD~Taiiw~v~~d~~-~k--l~~--tlvgh~----~~V~yi~wSPDdryLlaCg~------~e~ 292 (519)
T KOG0293|consen 229 FLQFSHNGK-YLASASKDSTAIIWIVVYDVH-FK--LKK--TLVGHS----QPVSYIMWSPDDRYLLACGF------DEV 292 (519)
T ss_pred EEEEcCCCe-eEeeccCCceEEEEEEecCcc-ee--eee--eeeccc----CceEEEEECCCCCeEEecCc------hHh
Confidence 478888887 4444 332 34788877643 10 011 222111 25667889998444444433 234
Q ss_pred EEEEECCCCcEEEEEecCCCCCCCCCccceEECCCCcEEEEeCCCCeEEEEcCCCceEEEecCCCCCCcccccCccccCe
Q 020019 126 VAAYDLSTWNRLFLTQLSGPSDGKSCADDVTVDAEGNAYVTDVTGSKIWKVGVKGEFLSIISSPLFTPKEWYKNLVGLNG 205 (332)
Q Consensus 126 l~~~d~~~g~~~~~~~l~~~~~~~~~~ndiavd~dG~lyvtd~~~~~I~~v~~~g~~~~~~~~~~~~~p~~~~~~~~~nG 205 (332)
+..||..+|.....+.- . -...+...+.-|||.=+|+-+....|+..+.||....-+.. -..| ....
T Consensus 293 ~~lwDv~tgd~~~~y~~---~-~~~S~~sc~W~pDg~~~V~Gs~dr~i~~wdlDgn~~~~W~g--vr~~-------~v~d 359 (519)
T KOG0293|consen 293 LSLWDVDTGDLRHLYPS---G-LGFSVSSCAWCPDGFRFVTGSPDRTIIMWDLDGNILGNWEG--VRDP-------KVHD 359 (519)
T ss_pred eeeccCCcchhhhhccc---C-cCCCcceeEEccCCceeEecCCCCcEEEecCCcchhhcccc--cccc-------eeEE
Confidence 78899999886544332 1 13457778999999878998888999999999875432211 1111 2458
Q ss_pred EEEccCc-eEEEEeCCCCeEEEEeCCCCCCccceeEEEEecCCCCCCCCeEEEeCCCeEEEEe
Q 020019 206 IVYHPDG-FLIVIHTFSGNLFKIDIVDGVGEGEEIKLIRVAGGPLSFGDGLELLSPTKLVVAG 267 (332)
Q Consensus 206 i~~~~dG-~Lyva~~~~~~i~~id~~~~~~~~~~~~~v~~~g~~~~~pdGi~~~~dG~l~va~ 267 (332)
+++.+|| +++.... ..+|.-++.++.. .+..+... ..-..+.+..||++...+
T Consensus 360 lait~Dgk~vl~v~~-d~~i~l~~~e~~~----dr~lise~----~~its~~iS~d~k~~Lvn 413 (519)
T KOG0293|consen 360 LAITYDGKYVLLVTV-DKKIRLYNREARV----DRGLISEE----QPITSFSISKDGKLALVN 413 (519)
T ss_pred EEEcCCCcEEEEEec-ccceeeechhhhh----hhcccccc----CceeEEEEcCCCcEEEEE
Confidence 8999999 8887664 3456556655431 11122221 123457788889988887
|
|
| >KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription] | Back alignment and domain information |
|---|
Probab=95.54 E-value=2.7 Score=42.43 Aligned_cols=247 Identities=16% Similarity=0.320 Sum_probs=129.0
Q ss_pred Ccee--EEEecCCccccceEEcCCCCEEEEEecCCeEEEEECCCCCCCc-----cceee--------eEEecccCcC---
Q 020019 34 ATHV--YHYHSSSFFRECAKWDDSGRRFIVSFLDGGIGQVAVPDDYPPG-----TVLEE--------VTLVKDLELT--- 95 (332)
Q Consensus 34 ~~~~--i~~~~~~~~pegia~d~~g~~~~~~~~~g~I~~vd~~~~~~~~-----~~~~~--------~~~~~~~~~~--- 95 (332)
+|.. +.+.-.........+.+++.++..+..+..|.+++....+... .+.+. .... ++...
T Consensus 366 lpSic~YT~~nt~~~v~ca~fSddssmlA~Gf~dS~i~~~Sl~p~kl~~lk~~~~l~~~d~~sad~~~~~~-D~~~~~~~ 444 (707)
T KOG0263|consen 366 LPSICMYTFHNTYQGVTCAEFSDDSSMLACGFVDSSVRVWSLTPKKLKKLKDASDLSNIDTESADVDVDML-DDDSSGTS 444 (707)
T ss_pred CCcEEEEEEEEcCCcceeEeecCCcchhhccccccEEEEEecchhhhccccchhhhccccccccchhhhhc-cccCCcee
Confidence 3444 3334444445667899999877777777777777665322100 00000 0011 11101
Q ss_pred -----C-CccceEEEeCCCCeEEEEEeCcCCCccceEEEEECCCCcEEEEEecCCCCCCCCCccceEECCCCcEEEEeCC
Q 020019 96 -----G-NGSLGLVLDHPRNRLLVVAADVFGNKYSAVAAYDLSTWNRLFLTQLSGPSDGKSCADDVTVDAEGNAYVTDVT 169 (332)
Q Consensus 96 -----~-~~~~gi~vd~~~g~l~v~~~~~~~~~~~~l~~~d~~~g~~~~~~~l~~~~~~~~~~ndiavd~dG~lyvtd~~ 169 (332)
+ ..+.|..+.|+ .+..+.... ...+..|.+.+..-...+. ++ ..-.-++.+.|.| .||+...
T Consensus 445 ~~L~GH~GPVyg~sFsPd-~rfLlScSE-----D~svRLWsl~t~s~~V~y~--GH---~~PVwdV~F~P~G-yYFatas 512 (707)
T KOG0263|consen 445 RTLYGHSGPVYGCSFSPD-RRFLLSCSE-----DSSVRLWSLDTWSCLVIYK--GH---LAPVWDVQFAPRG-YYFATAS 512 (707)
T ss_pred EEeecCCCceeeeeeccc-ccceeeccC-----CcceeeeecccceeEEEec--CC---CcceeeEEecCCc-eEEEecC
Confidence 1 13589999998 554444332 2345566776544322221 11 1223457788988 6665433
Q ss_pred ---CCeEEEEcCCCceEEEecCCCCCCcccccCccccCeEEEccCceEEEEeCCCCeEEEEeCCCCCCccceeEEEEecC
Q 020019 170 ---GSKIWKVGVKGEFLSIISSPLFTPKEWYKNLVGLNGIVYHPDGFLIVIHTFSGNLFKIDIVDGVGEGEEIKLIRVAG 246 (332)
Q Consensus 170 ---~~~I~~v~~~g~~~~~~~~~~~~~p~~~~~~~~~nGi~~~~dG~Lyva~~~~~~i~~id~~~~~~~~~~~~~v~~~g 246 (332)
..++|..|-. +.++.... ...-.+.+.|+|+.....+.....++.-+|..+|. .++.+. |
T Consensus 513 ~D~tArLWs~d~~-~PlRifag----------hlsDV~cv~FHPNs~Y~aTGSsD~tVRlWDv~~G~----~VRiF~--G 575 (707)
T KOG0263|consen 513 HDQTARLWSTDHN-KPLRIFAG----------HLSDVDCVSFHPNSNYVATGSSDRTVRLWDVSTGN----SVRIFT--G 575 (707)
T ss_pred CCceeeeeecccC-Cchhhhcc----------cccccceEEECCcccccccCCCCceEEEEEcCCCc----EEEEec--C
Confidence 3356655542 33332211 12234679999998444445666677778888772 454443 2
Q ss_pred CCCCCCCeEEEeCCCeEEEEeCCce--EEEEcCCCceEEEEEeeecCCCcccceEEEE-ECCeEEEEEecCcc
Q 020019 247 GPLSFGDGLELLSPTKLVVAGNPSA--RLVESSDGWETAAVVAKFSGPVHRLATAATV-KDGRVYLNHMLGFG 316 (332)
Q Consensus 247 ~~~~~pdGi~~~~dG~l~va~~~~~--~~v~~~dg~~~~~~~~~~~~~~~~~pt~va~-~~g~lyv~~~~g~~ 316 (332)
+......+++.|+|+..++..... .+-+.+.| ++...+.+ .-..-.++.| .+|.+.++...+++
T Consensus 576 -H~~~V~al~~Sp~Gr~LaSg~ed~~I~iWDl~~~----~~v~~l~~-Ht~ti~SlsFS~dg~vLasgg~Dns 642 (707)
T KOG0263|consen 576 -HKGPVTALAFSPCGRYLASGDEDGLIKIWDLANG----SLVKQLKG-HTGTIYSLSFSRDGNVLASGGADNS 642 (707)
T ss_pred -CCCceEEEEEcCCCceEeecccCCcEEEEEcCCC----cchhhhhc-ccCceeEEEEecCCCEEEecCCCCe
Confidence 445667899999998777764332 22245555 22222111 0122356777 66767765544444
|
|
| >PF00058 Ldl_recept_b: Low-density lipoprotein receptor repeat class B; InterPro: IPR000033 The low-density lipoprotein receptor (LDLR) is the major cholesterol-carrying lipoprotein of plasma, acting to regulate cholesterol homeostasis in mammalian cells | Back alignment and domain information |
|---|
Probab=95.53 E-value=0.08 Score=33.26 Aligned_cols=41 Identities=7% Similarity=0.092 Sum_probs=31.3
Q ss_pred ceEEEEeCCCC-eEEEEeCCCCCCccceeEEEEecCCCCCCCCeEEEeC
Q 020019 212 GFLIVIHTFSG-NLFKIDIVDGVGEGEEIKLIRVAGGPLSFGDGLELLS 259 (332)
Q Consensus 212 G~Lyva~~~~~-~i~~id~~~~~~~~~~~~~v~~~g~~~~~pdGi~~~~ 259 (332)
++||++|.... +|.+.++++. ..+.+- . ..+..|.||++|+
T Consensus 1 ~~iYWtD~~~~~~I~~a~~dGs-----~~~~vi-~-~~l~~P~giaVD~ 42 (42)
T PF00058_consen 1 GKIYWTDWSQDPSIERANLDGS-----NRRTVI-S-DDLQHPEGIAVDW 42 (42)
T ss_dssp TEEEEEETTTTEEEEEEETTST-----SEEEEE-E-SSTSSEEEEEEET
T ss_pred CEEEEEECCCCcEEEEEECCCC-----CeEEEE-E-CCCCCcCEEEECC
Confidence 47999999999 9999999854 333332 2 3578999999984
|
The LDL receptor binds LDL and transports it into cells by acidic endocytosis. In order to be internalized, the receptor-ligand complex must first cluster into clathrin-coated pits. Once inside the cell, the LDLR separates from its ligand, which is degraded in the lysosomes, while the receptor returns to the cell surface []. The internal dissociation of the LDLR with its ligand is mediated by proton pumps within the walls of the endosome that lower the pH. The LDLR is a multi-domain protein, containing: The ligand-binding domain contains seven or eight 40-amino acid LDLR class A (cysteine-rich) repeats, each of which contains a coordinated calcium ion and six cysteine residues involved in disulphide bond formation []. Similar domains have been found in other extracellular and membrane proteins []. The second conserved region contains two EGF repeats, followed by six LDLR class B (YWTD) repeats, and another EGF repeat. The LDLR class B repeats each contain a conserved YWTD motif, and is predicted to form a beta-propeller structure []. This region is critical for ligand release and recycling of the receptor []. The third domain is rich in serine and threonine residues and contains clustered O-linked carbohydrate chains. The fourth domain is the hydrophobic transmembrane region. The fifth domain is the cytoplasmic tail that directs the receptor to clathrin-coated pits. LDLR is closely related in structure to several other receptors, including LRP1, LRP1b, megalin/LRP2, VLDL receptor, lipoprotein receptor, MEGF7/LRP4, and LRP8/apolipoprotein E receptor2); these proteins participate in a wide range of physiological processes, including the regulation of lipid metabolism, protection against atherosclerosis, neurodevelopment, and transport of nutrients and vitamins []. This entry represents the LDLR classB (YWTD) repeat, the structure of which has been solved []. The six YWTD repeats together fold into a six-bladed beta-propeller. Each blade of the propeller consists of four antiparallel beta-strands; the innermost strand of each blade is labeled 1 and the outermost strand, 4. The sequence repeats are offset with respect to the blades of the propeller, such that any given 40-residue YWTD repeat spans strands 24 of one propeller blade and strand 1 of the subsequent blade. This offset ensures circularization of the propeller because the last strand of the final sequence repeat acts as an innermost strand 1 of the blade that harbors strands 24 from the first sequence repeat. The repeat is found in a variety of proteins that include, vitellogenin receptor from Drosophila melanogaster, low-density lipoprotein (LDL) receptor [], preproepidermal growth factor, and nidogen (entactin).; PDB: 3S2K_A 3S8Z_A 3S8V_B 4A0P_A 3SOB_B 3S94_B 4DG6_A 3SOV_A 3SOQ_A 1NPE_A .... |
| >PF05935 Arylsulfotrans: Arylsulfotransferase (ASST); InterPro: IPR010262 This family consists of several bacterial arylsulphotransferase proteins | Back alignment and domain information |
|---|
Probab=95.51 E-value=1.3 Score=43.56 Aligned_cols=120 Identities=20% Similarity=0.199 Sum_probs=67.1
Q ss_pred EEEeCCCCeEEEEEeCcCCCccceEEEEECCCCcEEEEEecCCCCCCCCCccceEECCCCcEEEEeC-------------
Q 020019 102 LVLDHPRNRLLVVAADVFGNKYSAVAAYDLSTWNRLFLTQLSGPSDGKSCADDVTVDAEGNAYVTDV------------- 168 (332)
Q Consensus 102 i~vd~~~g~l~v~~~~~~~~~~~~l~~~d~~~g~~~~~~~l~~~~~~~~~~ndiavd~dG~lyvtd~------------- 168 (332)
+..-++ |++++... ..+..+|.- |++.+...++. ....+-+|+...++|++++..+
T Consensus 153 ~~~l~n-G~ll~~~~-------~~~~e~D~~-G~v~~~~~l~~--~~~~~HHD~~~l~nGn~L~l~~~~~~~~~~~~~~~ 221 (477)
T PF05935_consen 153 FKQLPN-GNLLIGSG-------NRLYEIDLL-GKVIWEYDLPG--GYYDFHHDIDELPNGNLLILASETKYVDEDKDVDT 221 (477)
T ss_dssp EEE-TT-S-EEEEEB-------TEEEEE-TT---EEEEEE--T--TEE-B-S-EEE-TTS-EEEEEEETTEE-TS-EE--
T ss_pred eeEcCC-CCEEEecC-------CceEEEcCC-CCEEEeeecCC--cccccccccEECCCCCEEEEEeecccccCCCCccE
Confidence 566664 88887764 468889985 78777777742 1124678999999998654322
Q ss_pred CCCeEEEEcCCCceEEEecCC-CCC---C----c-------c--cccCccccCeEEEcc-CceEEEEeCCCCeEEEEeCC
Q 020019 169 TGSKIWKVGVKGEFLSIISSP-LFT---P----K-------E--WYKNLVGLNGIVYHP-DGFLIVIHTFSGNLFKIDIV 230 (332)
Q Consensus 169 ~~~~I~~v~~~g~~~~~~~~~-~~~---~----p-------~--~~~~~~~~nGi~~~~-dG~Lyva~~~~~~i~~id~~ 230 (332)
....|..+|++|+....++.. .+. . + . ....-...|+|.+++ ++.|+++-...+.|++|+..
T Consensus 222 ~~D~Ivevd~tG~vv~~wd~~d~ld~~~~~~~~~~~~~~~~~~~~~~DW~H~Nsi~yd~~dd~iivSsR~~s~V~~Id~~ 301 (477)
T PF05935_consen 222 VEDVIVEVDPTGEVVWEWDFFDHLDPYRDTVLKPYPYGDISGSGGGRDWLHINSIDYDPSDDSIIVSSRHQSAVIKIDYR 301 (477)
T ss_dssp -S-EEEEE-TTS-EEEEEEGGGTS-TT--TTGGT--SSSSS-SSTTSBS--EEEEEEETTTTEEEEEETTT-EEEEEE-T
T ss_pred ecCEEEEECCCCCEEEEEehHHhCCcccccccccccccccccCCCCCCccccCccEEeCCCCeEEEEcCcceEEEEEECC
Confidence 145799999889876554311 110 0 0 0 012335679999999 55999999999999999977
Q ss_pred CC
Q 020019 231 DG 232 (332)
Q Consensus 231 ~~ 232 (332)
++
T Consensus 302 t~ 303 (477)
T PF05935_consen 302 TG 303 (477)
T ss_dssp TS
T ss_pred CC
Confidence 66
|
Arylsulphotransferase (ASST) transfers a sulphate group from phenolic sulphate esters to a phenolic acceptor substrate [].; PDB: 3ETT_B 3ELQ_A 3ETS_A. |
| >KOG0646 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=95.48 E-value=2.5 Score=40.38 Aligned_cols=215 Identities=16% Similarity=0.219 Sum_probs=113.1
Q ss_pred eehhhcccCCCceeEEEecC------Cccc---cceEEcCCCCEEEEEecCCeEEEEECCCCCCCccceeeeEEecccCc
Q 020019 24 YIISQERANPATHVYHYHSS------SFFR---ECAKWDDSGRRFIVSFLDGGIGQVAVPDDYPPGTVLEEVTLVKDLEL 94 (332)
Q Consensus 24 ~~~~~~~~~~~~~~i~~~~~------~~~p---egia~d~~g~~~~~~~~~g~I~~vd~~~~~~~~~~~~~~~~~~~~~~ 94 (332)
|+.+....++..++-.+... -..| ..++.++.|.+++.+...+.||-|...+|.. +. +.. --.
T Consensus 52 yllsaq~~rp~l~vw~i~k~~~~~q~~v~Pg~v~al~s~n~G~~l~ag~i~g~lYlWelssG~L----L~---v~~-aHY 123 (476)
T KOG0646|consen 52 YLLSAQLKRPLLHVWEILKKDQVVQYIVLPGPVHALASSNLGYFLLAGTISGNLYLWELSSGIL----LN---VLS-AHY 123 (476)
T ss_pred heeeecccCccccccccCchhhhhhhcccccceeeeecCCCceEEEeecccCcEEEEEeccccH----HH---HHH-hhc
Confidence 55566666665555443321 1122 5788899998777775679999999888873 11 221 111
Q ss_pred CCCccceEEEeCCCCeEEEEEeCcCCCccceEEEEECCC-------CcEEEEEecCCCCCCCCCccceEECCCC-c-EEE
Q 020019 95 TGNGSLGLVLDHPRNRLLVVAADVFGNKYSAVAAYDLST-------WNRLFLTQLSGPSDGKSCADDVTVDAEG-N-AYV 165 (332)
Q Consensus 95 ~~~~~~gi~vd~~~g~l~v~~~~~~~~~~~~l~~~d~~~-------g~~~~~~~l~~~~~~~~~~ndiavd~dG-~-lyv 165 (332)
.....|.+..| |.++++.. +.+.+.+|.+-. +.+..+..+... .-.-.|+-++..| + -.+
T Consensus 124 --Q~ITcL~fs~d-gs~iiTgs-----kDg~V~vW~l~~lv~a~~~~~~~p~~~f~~H---tlsITDl~ig~Gg~~~rl~ 192 (476)
T KOG0646|consen 124 --QSITCLKFSDD-GSHIITGS-----KDGAVLVWLLTDLVSADNDHSVKPLHIFSDH---TLSITDLQIGSGGTNARLY 192 (476)
T ss_pred --cceeEEEEeCC-CcEEEecC-----CCccEEEEEEEeecccccCCCccceeeeccC---cceeEEEEecCCCccceEE
Confidence 14567888875 87777754 356788886521 111111112110 1233455555543 1 122
Q ss_pred EeCCCCeEEEEcCC-CceEEEecCCCCCCcccccCccccCeEEEccCc-eEEEEeCCCCeEEEEeCCCCC--Ccc-----
Q 020019 166 TDVTGSKIWKVGVK-GEFLSIISSPLFTPKEWYKNLVGLNGIVYHPDG-FLIVIHTFSGNLFKIDIVDGV--GEG----- 236 (332)
Q Consensus 166 td~~~~~I~~v~~~-g~~~~~~~~~~~~~p~~~~~~~~~nGi~~~~dG-~Lyva~~~~~~i~~id~~~~~--~~~----- 236 (332)
|.+....+-.+|.. |.++.-+ .|+ ..++.+++||-+ .+|+.. ..|+|+.+++..-. .++
T Consensus 193 TaS~D~t~k~wdlS~g~LLlti---~fp--------~si~av~lDpae~~~yiGt-~~G~I~~~~~~~~~~~~~~v~~k~ 260 (476)
T KOG0646|consen 193 TASEDRTIKLWDLSLGVLLLTI---TFP--------SSIKAVALDPAERVVYIGT-EEGKIFQNLLFKLSGQSAGVNQKG 260 (476)
T ss_pred EecCCceEEEEEeccceeeEEE---ecC--------CcceeEEEcccccEEEecC-CcceEEeeehhcCCcccccccccc
Confidence 33333333333322 2222111 121 246899999999 777764 56789888775321 110
Q ss_pred --c-eeEEEEecCCCC-CCCCeEEEeCCCeEEEEeCC
Q 020019 237 --E-EIKLIRVAGGPL-SFGDGLELLSPTKLVVAGNP 269 (332)
Q Consensus 237 --~-~~~~v~~~g~~~-~~pdGi~~~~dG~l~va~~~ 269 (332)
. ..+.-.+.|... .....+++.-||+|.+++..
T Consensus 261 ~~~~~t~~~~~~Gh~~~~~ITcLais~DgtlLlSGd~ 297 (476)
T KOG0646|consen 261 RHEENTQINVLVGHENESAITCLAISTDGTLLLSGDE 297 (476)
T ss_pred cccccceeeeeccccCCcceeEEEEecCccEEEeeCC
Confidence 0 001001112111 24667889999999999744
|
|
| >KOG1539 consensus WD repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=95.43 E-value=0.3 Score=49.55 Aligned_cols=150 Identities=19% Similarity=0.255 Sum_probs=101.1
Q ss_pred cccceEEcCCCCEEEEEecCCeEEEEECCCCCCCccceeeeEEecccCcCCCccceEEEeCCCCeEEEEEeCcCCCccce
Q 020019 46 FRECAKWDDSGRRFIVSFLDGGIGQVAVPDDYPPGTVLEEVTLVKDLELTGNGSLGLVLDHPRNRLLVVAADVFGNKYSA 125 (332)
Q Consensus 46 ~pegia~d~~g~~~~~~~~~g~I~~vd~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~vd~~~g~l~v~~~~~~~~~~~~ 125 (332)
...|++.|.-+++.++.-.+|-+..++-.++. +...-. .+.++.+|..+...+ +++...+ .-.
T Consensus 495 ~V~gla~D~~n~~~vsa~~~Gilkfw~f~~k~----------l~~~l~-l~~~~~~iv~hr~s~-l~a~~~d-----df~ 557 (910)
T KOG1539|consen 495 EVTGLAVDGTNRLLVSAGADGILKFWDFKKKV----------LKKSLR-LGSSITGIVYHRVSD-LLAIALD-----DFS 557 (910)
T ss_pred ceeEEEecCCCceEEEccCcceEEEEecCCcc----------eeeeec-cCCCcceeeeeehhh-hhhhhcC-----cee
Confidence 45689999988888877667888888876443 221111 123567888887634 4444333 346
Q ss_pred EEEEECCCCcEEEEEecCCCCCCCCCccceEECCCCcEEEEeCCCCeEEEEc-CCCceEEEecCCCCCCcccccCccccC
Q 020019 126 VAAYDLSTWNRLFLTQLSGPSDGKSCADDVTVDAEGNAYVTDVTGSKIWKVG-VKGEFLSIISSPLFTPKEWYKNLVGLN 204 (332)
Q Consensus 126 l~~~d~~~g~~~~~~~l~~~~~~~~~~ndiavd~dG~lyvtd~~~~~I~~v~-~~g~~~~~~~~~~~~~p~~~~~~~~~n 204 (332)
|.++|..+.++.+ ++.+. ....||+++.|||+..++.+..+.|..+| +.|...-.+. +. .-+.
T Consensus 558 I~vvD~~t~kvvR--~f~gh---~nritd~~FS~DgrWlisasmD~tIr~wDlpt~~lID~~~---vd--------~~~~ 621 (910)
T KOG1539|consen 558 IRVVDVVTRKVVR--EFWGH---GNRITDMTFSPDGRWLISASMDSTIRTWDLPTGTLIDGLL---VD--------SPCT 621 (910)
T ss_pred EEEEEchhhhhhH--Hhhcc---ccceeeeEeCCCCcEEEEeecCCcEEEEeccCcceeeeEe---cC--------Ccce
Confidence 8889988766543 34321 36789999999999999988889998888 4455543221 11 1245
Q ss_pred eEEEccCc-eEEEEeCCCCeEEEEe
Q 020019 205 GIVYHPDG-FLIVIHTFSGNLFKID 228 (332)
Q Consensus 205 Gi~~~~dG-~Lyva~~~~~~i~~id 228 (332)
.+.++|+| .|-.++.+.+-||-+.
T Consensus 622 sls~SPngD~LAT~Hvd~~gIylWs 646 (910)
T KOG1539|consen 622 SLSFSPNGDFLATVHVDQNGIYLWS 646 (910)
T ss_pred eeEECCCCCEEEEEEecCceEEEEE
Confidence 78899999 8888888877777654
|
|
| >KOG0646 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=95.43 E-value=1.4 Score=41.87 Aligned_cols=168 Identities=18% Similarity=0.180 Sum_probs=94.8
Q ss_pred cceEEcCCCCEEEEEecCCeEEEEECCCCCCCc---cceeeeEEecccCcCCCccceEEEeC--CCCeEEEEEeCcCCCc
Q 020019 48 ECAKWDDSGRRFIVSFLDGGIGQVAVPDDYPPG---TVLEEVTLVKDLELTGNGSLGLVLDH--PRNRLLVVAADVFGNK 122 (332)
Q Consensus 48 egia~d~~g~~~~~~~~~g~I~~vd~~~~~~~~---~~~~~~~~~~~~~~~~~~~~gi~vd~--~~g~l~v~~~~~~~~~ 122 (332)
..+.+..||..++++..+|.|..|+..+-..+. .+.....|..+ . -+...|.++. -+.+||-+..|
T Consensus 127 TcL~fs~dgs~iiTgskDg~V~vW~l~~lv~a~~~~~~~p~~~f~~H-t---lsITDl~ig~Gg~~~rl~TaS~D----- 197 (476)
T KOG0646|consen 127 TCLKFSDDGSHIITGSKDGAVLVWLLTDLVSADNDHSVKPLHIFSDH-T---LSITDLQIGSGGTNARLYTASED----- 197 (476)
T ss_pred eEEEEeCCCcEEEecCCCccEEEEEEEeecccccCCCccceeeeccC-c---ceeEEEEecCCCccceEEEecCC-----
Confidence 356778888888877778887777643211000 00000011100 0 0233444433 23678877764
Q ss_pred cceEEEEECCCCcEEEEEecCCCCCCCCCccceEECCCCc-EEEEeCCCCeEEEEcCCCce---E----EEecCCCCCCc
Q 020019 123 YSAVAAYDLSTWNRLFLTQLSGPSDGKSCADDVTVDAEGN-AYVTDVTGSKIWKVGVKGEF---L----SIISSPLFTPK 194 (332)
Q Consensus 123 ~~~l~~~d~~~g~~~~~~~l~~~~~~~~~~ndiavd~dG~-lyvtd~~~~~I~~v~~~g~~---~----~~~~~~~~~~p 194 (332)
..+..||+..|.+...+.++ ..++.+++||.++ +|+. +..|.||.++..+.. . +......-..+
T Consensus 198 -~t~k~wdlS~g~LLlti~fp------~si~av~lDpae~~~yiG-t~~G~I~~~~~~~~~~~~~~v~~k~~~~~~t~~~ 269 (476)
T KOG0646|consen 198 -RTIKLWDLSLGVLLLTITFP------SSIKAVALDPAERVVYIG-TEEGKIFQNLLFKLSGQSAGVNQKGRHEENTQIN 269 (476)
T ss_pred -ceEEEEEeccceeeEEEecC------CcceeEEEcccccEEEec-CCcceEEeeehhcCCcccccccccccccccceee
Confidence 34677899999887777663 3567899999876 5665 456888876644221 0 00000000000
Q ss_pred cccc--CccccCeEEEccCceEEEEeCCCCeEEEEeCCCC
Q 020019 195 EWYK--NLVGLNGIVYHPDGFLIVIHTFSGNLFKIDIVDG 232 (332)
Q Consensus 195 ~~~~--~~~~~nGi~~~~dG~Lyva~~~~~~i~~id~~~~ 232 (332)
.... +......++++-||+|.++-...|++..+|....
T Consensus 270 ~~~Gh~~~~~ITcLais~DgtlLlSGd~dg~VcvWdi~S~ 309 (476)
T KOG0646|consen 270 VLVGHENESAITCLAISTDGTLLLSGDEDGKVCVWDIYSK 309 (476)
T ss_pred eeccccCCcceeEEEEecCccEEEeeCCCCCEEEEecchH
Confidence 0001 1124578999999988888778888888887653
|
|
| >PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins | Back alignment and domain information |
|---|
Probab=95.42 E-value=1.3 Score=37.86 Aligned_cols=118 Identities=19% Similarity=0.196 Sum_probs=71.8
Q ss_pred eEEEEECCCCcEEEEEecCCCCCCCCCccceEECCCCc-EEEE-eCCCCeEEEEcCCCceEEEecCCCCCCcccccCccc
Q 020019 125 AVAAYDLSTWNRLFLTQLSGPSDGKSCADDVTVDAEGN-AYVT-DVTGSKIWKVGVKGEFLSIISSPLFTPKEWYKNLVG 202 (332)
Q Consensus 125 ~l~~~d~~~g~~~~~~~l~~~~~~~~~~ndiavd~dG~-lyvt-d~~~~~I~~v~~~g~~~~~~~~~~~~~p~~~~~~~~ 202 (332)
.|+.++.+... ...+.+. ...-.++++..|+|+ +.+. ......|..++.+++...-+.. ..
T Consensus 40 ~l~~~~~~~~~-~~~i~l~----~~~~I~~~~WsP~g~~favi~g~~~~~v~lyd~~~~~i~~~~~------------~~ 102 (194)
T PF08662_consen 40 ELFYLNEKNIP-VESIELK----KEGPIHDVAWSPNGNEFAVIYGSMPAKVTLYDVKGKKIFSFGT------------QP 102 (194)
T ss_pred EEEEEecCCCc-cceeecc----CCCceEEEEECcCCCEEEEEEccCCcccEEEcCcccEeEeecC------------CC
Confidence 46666665433 3334442 122378899999986 4443 2334467777777664432211 23
Q ss_pred cCeEEEccCc-eEEEEeCC--CCeEEEEeCCCCCCccceeEEEEecCCCCCCCCeEEEeCCCeEEEEeC
Q 020019 203 LNGIVYHPDG-FLIVIHTF--SGNLFKIDIVDGVGEGEEIKLIRVAGGPLSFGDGLELLSPTKLVVAGN 268 (332)
Q Consensus 203 ~nGi~~~~dG-~Lyva~~~--~~~i~~id~~~~~~~~~~~~~v~~~g~~~~~pdGi~~~~dG~l~va~~ 268 (332)
.|.|.|+|+| .|.++... .|.|..+|.+.. +.+.... ......++.+|||+.+++..
T Consensus 103 ~n~i~wsP~G~~l~~~g~~n~~G~l~~wd~~~~----~~i~~~~-----~~~~t~~~WsPdGr~~~ta~ 162 (194)
T PF08662_consen 103 RNTISWSPDGRFLVLAGFGNLNGDLEFWDVRKK----KKISTFE-----HSDATDVEWSPDGRYLATAT 162 (194)
T ss_pred ceEEEECCCCCEEEEEEccCCCcEEEEEECCCC----EEeeccc-----cCcEEEEEEcCCCCEEEEEE
Confidence 5789999999 77766543 467888888754 1232222 12356889999999888853
|
|
| >KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown] | Back alignment and domain information |
|---|
Probab=95.42 E-value=1.8 Score=41.87 Aligned_cols=152 Identities=11% Similarity=0.018 Sum_probs=97.6
Q ss_pred CccccceEEcCCCCEEEEEecCCeEEEEECCCCCCCccceeeeEEecccCcCCCccceEEEeCCCCeEEEEEeCcCCCcc
Q 020019 44 SFFRECAKWDDSGRRFIVSFLDGGIGQVAVPDDYPPGTVLEEVTLVKDLELTGNGSLGLVLDHPRNRLLVVAADVFGNKY 123 (332)
Q Consensus 44 ~~~pegia~d~~g~~~~~~~~~g~I~~vd~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~vd~~~g~l~v~~~~~~~~~~ 123 (332)
+...-|++..++.+.|++...++.+..++ + .+. +....+.+ ......++|. |.+-+... .
T Consensus 368 ~delwgla~hps~~q~~T~gqdk~v~lW~-~-~k~-----~wt~~~~d------~~~~~~fhps-g~va~Gt~------~ 427 (626)
T KOG2106|consen 368 GDELWGLATHPSKNQLLTCGQDKHVRLWN-D-HKL-----EWTKIIED------PAECADFHPS-GVVAVGTA------T 427 (626)
T ss_pred ccceeeEEcCCChhheeeccCcceEEEcc-C-Cce-----eEEEEecC------ceeEeeccCc-ceEEEeec------c
Confidence 33556899999999898887778777776 2 221 21112212 3456778886 75444433 4
Q ss_pred ceEEEEECCCCcEEEEEecCCCCCCCCCccceEECCCCcEEEEeCCCCe--EEEEcCCCceEEEecCCCCCCcccccCcc
Q 020019 124 SAVAAYDLSTWNRLFLTQLSGPSDGKSCADDVTVDAEGNAYVTDVTGSK--IWKVGVKGEFLSIISSPLFTPKEWYKNLV 201 (332)
Q Consensus 124 ~~l~~~d~~~g~~~~~~~l~~~~~~~~~~ndiavd~dG~lyvtd~~~~~--I~~v~~~g~~~~~~~~~~~~~p~~~~~~~ 201 (332)
+...++|.++...+.. .. + +.-.+-+++.|+|..+..-+.++. ||+++.+|.....++.... .
T Consensus 428 G~w~V~d~e~~~lv~~-~~----d-~~~ls~v~ysp~G~~lAvgs~d~~iyiy~Vs~~g~~y~r~~k~~g-s-------- 492 (626)
T KOG2106|consen 428 GRWFVLDTETQDLVTI-HT----D-NEQLSVVRYSPDGAFLAVGSHDNHIYIYRVSANGRKYSRVGKCSG-S-------- 492 (626)
T ss_pred ceEEEEecccceeEEE-Ee----c-CCceEEEEEcCCCCEEEEecCCCeEEEEEECCCCcEEEEeeeecC-c--------
Confidence 5678889887554432 21 1 345667999999987777777776 5567777765443332221 2
Q ss_pred ccCeEEEccCceEEEEeCCCCeEEEEeCC
Q 020019 202 GLNGIVYHPDGFLIVIHTFSGNLFKIDIV 230 (332)
Q Consensus 202 ~~nGi~~~~dG~Lyva~~~~~~i~~id~~ 230 (332)
...-+.|+.|+...++++..-.|+-+.+.
T Consensus 493 ~ithLDwS~Ds~~~~~~S~d~eiLyW~~~ 521 (626)
T KOG2106|consen 493 PITHLDWSSDSQFLVSNSGDYEILYWKPS 521 (626)
T ss_pred eeEEeeecCCCceEEeccCceEEEEEccc
Confidence 24678899999888898888888666433
|
|
| >KOG2048 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=95.41 E-value=3.2 Score=41.38 Aligned_cols=194 Identities=16% Similarity=0.138 Sum_probs=113.8
Q ss_pred ccccceEEcCCCCEEEEEecCCeEEEEECCCCCCCccceeeeEEecccCcCCCccceEEEeCCCCeEEEEEeCcCCCccc
Q 020019 45 FFRECAKWDDSGRRFIVSFLDGGIGQVAVPDDYPPGTVLEEVTLVKDLELTGNGSLGLVLDHPRNRLLVVAADVFGNKYS 124 (332)
Q Consensus 45 ~~pegia~d~~g~~~~~~~~~g~I~~vd~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~vd~~~g~l~v~~~~~~~~~~~ 124 (332)
...|+++|.+.++ +|+.-.+|.|..+|+.+.+- ....++ .+...+.|++.+.+..+-|.+. .+
T Consensus 70 rsIE~L~W~e~~R-LFS~g~sg~i~EwDl~~lk~--------~~~~d~--~gg~IWsiai~p~~~~l~Igcd------dG 132 (691)
T KOG2048|consen 70 RSIESLAWAEGGR-LFSSGLSGSITEWDLHTLKQ--------KYNIDS--NGGAIWSIAINPENTILAIGCD------DG 132 (691)
T ss_pred CceeeEEEccCCe-EEeecCCceEEEEecccCce--------eEEecC--CCcceeEEEeCCccceEEeecC------Cc
Confidence 3779999996665 55665579999999987762 121122 2346789999998555555543 23
Q ss_pred eEEEEECCCCcEEEEEecCCCCCCCCCccceEECCCCcEEEEeCCCCeEEEEcCC-CceEEEecCCCCCCcccccCcccc
Q 020019 125 AVAAYDLSTWNRLFLTQLSGPSDGKSCADDVTVDAEGNAYVTDVTGSKIWKVGVK-GEFLSIISSPLFTPKEWYKNLVGL 203 (332)
Q Consensus 125 ~l~~~d~~~g~~~~~~~l~~~~~~~~~~ndiavd~dG~lyvtd~~~~~I~~v~~~-g~~~~~~~~~~~~~p~~~~~~~~~ 203 (332)
.++.|+..+++......|. . ..++.-.+..+++|.=.++-+..|.|...|.. +...-......+.... ......
T Consensus 133 vl~~~s~~p~~I~~~r~l~--r-q~sRvLslsw~~~~~~i~~Gs~Dg~Iriwd~~~~~t~~~~~~~~d~l~k--~~~~iV 207 (691)
T KOG2048|consen 133 VLYDFSIGPDKITYKRSLM--R-QKSRVLSLSWNPTGTKIAGGSIDGVIRIWDVKSGQTLHIITMQLDRLSK--REPTIV 207 (691)
T ss_pred eEEEEecCCceEEEEeecc--c-ccceEEEEEecCCccEEEecccCceEEEEEcCCCceEEEeeeccccccc--CCceEE
Confidence 5666777666665555552 2 24778889999998756777777888888765 3332211111110000 000112
Q ss_pred CeEEEccCceEEEEeCCCCeEEEEeCCCCCCccceeEEEEecCCCCCCCCeEEEeCC-CeEEEEeC
Q 020019 204 NGIVYHPDGFLIVIHTFSGNLFKIDIVDGVGEGEEIKLIRVAGGPLSFGDGLELLSP-TKLVVAGN 268 (332)
Q Consensus 204 nGi~~~~dG~Lyva~~~~~~i~~id~~~~~~~~~~~~~v~~~g~~~~~pdGi~~~~d-G~l~va~~ 268 (332)
=++.+-.|++|.-.|+ +|.|..+|.+.+++ ++.+... ....-.|+++++ .+++.++.
T Consensus 208 WSv~~Lrd~tI~sgDS-~G~V~FWd~~~gTL----iqS~~~h---~adVl~Lav~~~~d~vfsaGv 265 (691)
T KOG2048|consen 208 WSVLFLRDSTIASGDS-AGTVTFWDSIFGTL----IQSHSCH---DADVLALAVADNEDRVFSAGV 265 (691)
T ss_pred EEEEEeecCcEEEecC-CceEEEEcccCcch----hhhhhhh---hcceeEEEEcCCCCeEEEccC
Confidence 2444457777766665 67888888887742 3322211 123345667665 55666653
|
|
| >KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=95.37 E-value=2.7 Score=40.25 Aligned_cols=194 Identities=15% Similarity=0.123 Sum_probs=109.4
Q ss_pred cceEEcCCCCEEEEEecCCeEEEEECCCCCCCccceeeeEEecccCcCCCccceEEEeCCCCeEEEEEeCcCCCccceEE
Q 020019 48 ECAKWDDSGRRFIVSFLDGGIGQVAVPDDYPPGTVLEEVTLVKDLELTGNGSLGLVLDHPRNRLLVVAADVFGNKYSAVA 127 (332)
Q Consensus 48 egia~d~~g~~~~~~~~~g~I~~vd~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~vd~~~g~l~v~~~~~~~~~~~~l~ 127 (332)
.++.+-.||+++...-.+|-|..+|..+.. .+. .+... . ....-+.+.+.++++++...| ...+.
T Consensus 72 ~s~~fR~DG~LlaaGD~sG~V~vfD~k~r~----iLR--~~~ah-~---apv~~~~f~~~d~t~l~s~sD-----d~v~k 136 (487)
T KOG0310|consen 72 YSVDFRSDGRLLAAGDESGHVKVFDMKSRV----ILR--QLYAH-Q---APVHVTKFSPQDNTMLVSGSD-----DKVVK 136 (487)
T ss_pred eEEEeecCCeEEEccCCcCcEEEeccccHH----HHH--HHhhc-c---CceeEEEecccCCeEEEecCC-----CceEE
Confidence 457777888888766667888888843311 111 22211 1 123456677765777776544 23456
Q ss_pred EEECCCCcEEEEEecCCCCCCCCCccceEECCC-CcEEEEeCCCCeEEEEcCCCceEE--EecCCCCCCcccccCccccC
Q 020019 128 AYDLSTWNRLFLTQLSGPSDGKSCADDVTVDAE-GNAYVTDVTGSKIWKVGVKGEFLS--IISSPLFTPKEWYKNLVGLN 204 (332)
Q Consensus 128 ~~d~~~g~~~~~~~l~~~~~~~~~~ndiavd~d-G~lyvtd~~~~~I~~v~~~g~~~~--~~~~~~~~~p~~~~~~~~~n 204 (332)
.||..++.+ ..++.+.. -+....++.|. +.+.+|-+..|.|--+|..-.... -++.. .| ..
T Consensus 137 ~~d~s~a~v--~~~l~~ht---DYVR~g~~~~~~~hivvtGsYDg~vrl~DtR~~~~~v~elnhg---~p--------Ve 200 (487)
T KOG0310|consen 137 YWDLSTAYV--QAELSGHT---DYVRCGDISPANDHIVVTGSYDGKVRLWDTRSLTSRVVELNHG---CP--------VE 200 (487)
T ss_pred EEEcCCcEE--EEEecCCc---ceeEeeccccCCCeEEEecCCCceEEEEEeccCCceeEEecCC---Cc--------ee
Confidence 688877664 34554332 23344555554 459999999999888886533222 12221 11 24
Q ss_pred eEEEccCceEEEEeCCCCeEEEEeCCCCCCccceeEEEEecCCCCCCCCeEEEeCCCeEEEE-eCCceEEEEcCCC
Q 020019 205 GIVYHPDGFLIVIHTFSGNLFKIDIVDGVGEGEEIKLIRVAGGPLSFGDGLELLSPTKLVVA-GNPSARLVESSDG 279 (332)
Q Consensus 205 Gi~~~~dG~Lyva~~~~~~i~~id~~~~~~~~~~~~~v~~~g~~~~~pdGi~~~~dG~l~va-~~~~~~~v~~~dg 279 (332)
.+++-|.|.++++.. ++.+-.+|+.+|. +.+ .... ........|++..++.-.++ .-.+...++.-+.
T Consensus 201 ~vl~lpsgs~iasAg-Gn~vkVWDl~~G~---qll--~~~~-~H~KtVTcL~l~s~~~rLlS~sLD~~VKVfd~t~ 269 (487)
T KOG0310|consen 201 SVLALPSGSLIASAG-GNSVKVWDLTTGG---QLL--TSMF-NHNKTVTCLRLASDSTRLLSGSLDRHVKVFDTTN 269 (487)
T ss_pred eEEEcCCCCEEEEcC-CCeEEEEEecCCc---eeh--hhhh-cccceEEEEEeecCCceEeecccccceEEEEccc
Confidence 567778887887654 4557778888652 111 1111 13355678888887664444 4333333454444
|
|
| >COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown] | Back alignment and domain information |
|---|
Probab=95.36 E-value=2.8 Score=40.34 Aligned_cols=136 Identities=18% Similarity=0.108 Sum_probs=66.9
Q ss_pred ceEEEEECCCCcEEEE-EecCC---CCC-----CCCCccceEECCCCcEEEEeCCCCeEEEEcCCCceEEEecCCCCCCc
Q 020019 124 SAVAAYDLSTWNRLFL-TQLSG---PSD-----GKSCADDVTVDAEGNAYVTDVTGSKIWKVGVKGEFLSIISSPLFTPK 194 (332)
Q Consensus 124 ~~l~~~d~~~g~~~~~-~~l~~---~~~-----~~~~~ndiavd~dG~lyvtd~~~~~I~~v~~~g~~~~~~~~~~~~~p 194 (332)
+.|+.||+++..++.. +.++- +.+ ...+.++.++-+ |+.|..-+ .|+.+..++-+....-+....
T Consensus 287 GdIylydP~td~lekldI~lpl~rk~k~~k~~~pskyledfa~~~-Gd~ia~VS-RGkaFi~~~~~~~~iqv~~~~---- 360 (668)
T COG4946 287 GDIYLYDPETDSLEKLDIGLPLDRKKKQPKFVNPSKYLEDFAVVN-GDYIALVS-RGKAFIMRPWDGYSIQVGKKG---- 360 (668)
T ss_pred CcEEEeCCCcCcceeeecCCccccccccccccCHHHhhhhhccCC-CcEEEEEe-cCcEEEECCCCCeeEEcCCCC----
Confidence 4578888877654432 22210 000 113566666653 55544433 245555554433222111110
Q ss_pred ccccCccccCeEEEccCceEEEEeCCCCeEEEEeCCCCCCccceeEEEEecCCCCCCCCeEEEeCCCe-EEEEeC-CceE
Q 020019 195 EWYKNLVGLNGIVYHPDGFLIVIHTFSGNLFKIDIVDGVGEGEEIKLIRVAGGPLSFGDGLELLSPTK-LVVAGN-PSAR 272 (332)
Q Consensus 195 ~~~~~~~~~nGi~~~~dG~Lyva~~~~~~i~~id~~~~~~~~~~~~~v~~~g~~~~~pdGi~~~~dG~-l~va~~-~~~~ 272 (332)
.....-+..+++ .+.++......|-.++.+++ .++.+. .+++....|.++++|+ +.++++ ...|
T Consensus 361 -----~VrY~r~~~~~e-~~vigt~dgD~l~iyd~~~~-----e~kr~e---~~lg~I~av~vs~dGK~~vvaNdr~el~ 426 (668)
T COG4946 361 -----GVRYRRIQVDPE-GDVIGTNDGDKLGIYDKDGG-----EVKRIE---KDLGNIEAVKVSPDGKKVVVANDRFELW 426 (668)
T ss_pred -----ceEEEEEccCCc-ceEEeccCCceEEEEecCCc-----eEEEee---CCccceEEEEEcCCCcEEEEEcCceEEE
Confidence 011112222233 34555555556777777766 455554 2456667788888888 444443 2456
Q ss_pred EEEcCCC
Q 020019 273 LVESSDG 279 (332)
Q Consensus 273 ~v~~~dg 279 (332)
++....|
T Consensus 427 vididng 433 (668)
T COG4946 427 VIDIDNG 433 (668)
T ss_pred EEEecCC
Confidence 6666666
|
|
| >KOG0289 consensus mRNA splicing factor [General function prediction only] | Back alignment and domain information |
|---|
Probab=95.26 E-value=2.8 Score=39.77 Aligned_cols=187 Identities=11% Similarity=0.135 Sum_probs=103.0
Q ss_pred cceEEcCCCCEEEEEecCCeEEEEECCCCCCCccceeeeEEecccCcCCCccceEEEeCCCCeEEEEEeCcCCCccceEE
Q 020019 48 ECAKWDDSGRRFIVSFLDGGIGQVAVPDDYPPGTVLEEVTLVKDLELTGNGSLGLVLDHPRNRLLVVAADVFGNKYSAVA 127 (332)
Q Consensus 48 egia~d~~g~~~~~~~~~g~I~~vd~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~vd~~~g~l~v~~~~~~~~~~~~l~ 127 (332)
.++...+.|..+++...++...--|..++.. .+..++. ..+-.....+++|| |.++.+.. ..+.|.
T Consensus 307 ~~ls~h~tgeYllsAs~d~~w~Fsd~~~g~~-------lt~vs~~-~s~v~~ts~~fHpD-gLifgtgt-----~d~~vk 372 (506)
T KOG0289|consen 307 TGLSLHPTGEYLLSASNDGTWAFSDISSGSQ-------LTVVSDE-TSDVEYTSAAFHPD-GLIFGTGT-----PDGVVK 372 (506)
T ss_pred eeeeeccCCcEEEEecCCceEEEEEccCCcE-------EEEEeec-cccceeEEeeEcCC-ceEEeccC-----CCceEE
Confidence 3455666666444444445444444443431 1222221 11113457789997 98887754 256788
Q ss_pred EEECCCCcEEEEEecCCCCCCCCCccceEECCCCcEEEEeCCCCeEEEEcCCCceEEEecCCCCCCcccccCccccCeEE
Q 020019 128 AYDLSTWNRLFLTQLSGPSDGKSCADDVTVDAEGNAYVTDVTGSKIWKVGVKGEFLSIISSPLFTPKEWYKNLVGLNGIV 207 (332)
Q Consensus 128 ~~d~~~g~~~~~~~l~~~~~~~~~~ndiavd~dG~lyvtd~~~~~I~~v~~~g~~~~~~~~~~~~~p~~~~~~~~~nGi~ 207 (332)
.||++++... ..+++. .+-...+.+..+|-..++....+.|..+|.. |... -..+.- +.....+.+.
T Consensus 373 iwdlks~~~~--a~Fpgh---t~~vk~i~FsENGY~Lat~add~~V~lwDLR-Kl~n---~kt~~l----~~~~~v~s~~ 439 (506)
T KOG0289|consen 373 IWDLKSQTNV--AKFPGH---TGPVKAISFSENGYWLATAADDGSVKLWDLR-KLKN---FKTIQL----DEKKEVNSLS 439 (506)
T ss_pred EEEcCCcccc--ccCCCC---CCceeEEEeccCceEEEEEecCCeEEEEEeh-hhcc---cceeec----cccccceeEE
Confidence 8999987643 345321 2345569999999666777777778777754 2111 011211 1233578999
Q ss_pred EccCc-eEEEEeCCCCeEEEEeCCCCCCccceeEEEEecCCCCCCCCeEEEeCCCeEEEEe
Q 020019 208 YHPDG-FLIVIHTFSGNLFKIDIVDGVGEGEEIKLIRVAGGPLSFGDGLELLSPTKLVVAG 267 (332)
Q Consensus 208 ~~~dG-~Lyva~~~~~~i~~id~~~~~~~~~~~~~v~~~g~~~~~pdGi~~~~dG~l~va~ 267 (332)
||..| +|.++ ..+=+||.+...+..= ..++. +. ...+-.+|+.+...-.+.+..
T Consensus 440 fD~SGt~L~~~-g~~l~Vy~~~k~~k~W--~~~~~--~~-~~sg~st~v~Fg~~aq~l~s~ 494 (506)
T KOG0289|consen 440 FDQSGTYLGIA-GSDLQVYICKKKTKSW--TEIKE--LA-DHSGLSTGVRFGEHAQYLAST 494 (506)
T ss_pred EcCCCCeEEee-cceeEEEEEecccccc--eeeeh--hh-hcccccceeeecccceEEeec
Confidence 99999 66655 4445677776554310 01111 11 122356788887665444443
|
|
| >KOG2139 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=95.18 E-value=2.7 Score=39.08 Aligned_cols=156 Identities=13% Similarity=0.158 Sum_probs=94.2
Q ss_pred ccccceEEcCCCCEEEEE-ecCCeEEEEECCCCCCCccceeeeEEecccCcCCCccceEEEeCCCCeEEEEEeCcCCCcc
Q 020019 45 FFRECAKWDDSGRRFIVS-FLDGGIGQVAVPDDYPPGTVLEEVTLVKDLELTGNGSLGLVLDHPRNRLLVVAADVFGNKY 123 (332)
Q Consensus 45 ~~pegia~d~~g~~~~~~-~~~g~I~~vd~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~vd~~~g~l~v~~~~~~~~~~ 123 (332)
.....+.+.+||..+++. ..+..|..+|++++.. . .+.. -+. .+..=+...|+.+.++.+..+
T Consensus 196 ~pVtsmqwn~dgt~l~tAS~gsssi~iWdpdtg~~-----~--pL~~-~gl--gg~slLkwSPdgd~lfaAt~d------ 259 (445)
T KOG2139|consen 196 NPVTSMQWNEDGTILVTASFGSSSIMIWDPDTGQK-----I--PLIP-KGL--GGFSLLKWSPDGDVLFAATCD------ 259 (445)
T ss_pred ceeeEEEEcCCCCEEeecccCcceEEEEcCCCCCc-----c--cccc-cCC--CceeeEEEcCCCCEEEEeccc------
Confidence 366789999999988877 6678899999998763 1 2221 111 133456789984455555443
Q ss_pred ceEEEEECC-CCcEEEEEecCCCCCCCCCccceEECCCCc-EEEEeCCCCeEEEEcCCCceEEEecCCC---------CC
Q 020019 124 SAVAAYDLS-TWNRLFLTQLSGPSDGKSCADDVTVDAEGN-AYVTDVTGSKIWKVGVKGEFLSIISSPL---------FT 192 (332)
Q Consensus 124 ~~l~~~d~~-~g~~~~~~~l~~~~~~~~~~ndiavd~dG~-lyvtd~~~~~I~~v~~~g~~~~~~~~~~---------~~ 192 (332)
+...+|... +..-+ ...+ . ..+.+.-..+|+|+ |.++.++...||.+.-+++-..+..... +.
T Consensus 260 avfrlw~e~q~wt~e-rw~l---g--sgrvqtacWspcGsfLLf~~sgsp~lysl~f~~~~~~~~~~~~~k~~lliaDL~ 333 (445)
T KOG2139|consen 260 AVFRLWQENQSWTKE-RWIL---G--SGRVQTACWSPCGSFLLFACSGSPRLYSLTFDGEDSVFLRPQSIKRVLLIADLQ 333 (445)
T ss_pred ceeeeehhcccceec-ceec---c--CCceeeeeecCCCCEEEEEEcCCceEEEEeecCCCccccCcccceeeeeeccch
Confidence 222334322 11111 1222 1 23778889999996 8899999999999887765433221000 00
Q ss_pred -----CcccccCccccCeEEEccCc-eEEEEeCCCCe
Q 020019 193 -----PKEWYKNLVGLNGIVYHPDG-FLIVIHTFSGN 223 (332)
Q Consensus 193 -----~p~~~~~~~~~nGi~~~~dG-~Lyva~~~~~~ 223 (332)
.+ ..--...+.-|++||.| +|-|.--+...
T Consensus 334 e~ti~ag-~~l~cgeaq~lawDpsGeyLav~fKg~~~ 369 (445)
T KOG2139|consen 334 EVTICAG-QRLCCGEAQCLAWDPSGEYLAVIFKGQSF 369 (445)
T ss_pred hhhhhcC-cccccCccceeeECCCCCEEEEEEcCCch
Confidence 00 00012357899999999 88888766653
|
|
| >KOG1274 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=95.09 E-value=1.4 Score=45.34 Aligned_cols=160 Identities=14% Similarity=0.143 Sum_probs=93.4
Q ss_pred cceEEcCCCCEEEEEecCCeEEEEECCCCCCCccceeeeEEecccCcCCCccceEEEeCCCCeEEEEEeCcCCCccceEE
Q 020019 48 ECAKWDDSGRRFIVSFLDGGIGQVAVPDDYPPGTVLEEVTLVKDLELTGNGSLGLVLDHPRNRLLVVAADVFGNKYSAVA 127 (332)
Q Consensus 48 egia~d~~g~~~~~~~~~g~I~~vd~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~vd~~~g~l~v~~~~~~~~~~~~l~ 127 (332)
..++++.+|++......+=.|-.++.++.. ++..+... + ....++.++|. +.+.++..- .+.|.
T Consensus 100 r~~~v~g~g~~iaagsdD~~vK~~~~~D~s------~~~~lrgh-~---apVl~l~~~p~-~~fLAvss~-----dG~v~ 163 (933)
T KOG1274|consen 100 RDLAVSGSGKMIAAGSDDTAVKLLNLDDSS------QEKVLRGH-D---APVLQLSYDPK-GNFLAVSSC-----DGKVQ 163 (933)
T ss_pred eEEEEecCCcEEEeecCceeEEEEeccccc------hheeeccc-C---CceeeeeEcCC-CCEEEEEec-----CceEE
Confidence 457888888866655443344444444332 11122211 1 14679999997 665555432 46799
Q ss_pred EEECCCCcEEEEEecCCCCC--C-CCCccceEECCCCcEEEEeCCCCeEEEEcCCCceEEE-ecCCCCCCcccccCcccc
Q 020019 128 AYDLSTWNRLFLTQLSGPSD--G-KSCADDVTVDAEGNAYVTDVTGSKIWKVGVKGEFLSI-ISSPLFTPKEWYKNLVGL 203 (332)
Q Consensus 128 ~~d~~~g~~~~~~~l~~~~~--~-~~~~ndiavd~dG~lyvtd~~~~~I~~v~~~g~~~~~-~~~~~~~~p~~~~~~~~~ 203 (332)
+||+.++........-.+.. . ....+-+++.|+|.-|..-...+.|-.++.+|-...+ +.. .. .-...
T Consensus 164 iw~~~~~~~~~tl~~v~k~n~~~~s~i~~~~aW~Pk~g~la~~~~d~~Vkvy~r~~we~~f~Lr~-~~-------~ss~~ 235 (933)
T KOG1274|consen 164 IWDLQDGILSKTLTGVDKDNEFILSRICTRLAWHPKGGTLAVPPVDNTVKVYSRKGWELQFKLRD-KL-------SSSKF 235 (933)
T ss_pred EEEcccchhhhhcccCCccccccccceeeeeeecCCCCeEEeeccCCeEEEEccCCceeheeecc-cc-------cccce
Confidence 99999887654433211111 1 2345668999995444433456788888887643332 111 11 01225
Q ss_pred CeEEEccCceEEEEeCCCCeEEEEeCCC
Q 020019 204 NGIVYHPDGFLIVIHTFSGNLFKIDIVD 231 (332)
Q Consensus 204 nGi~~~~dG~Lyva~~~~~~i~~id~~~ 231 (332)
+-+.|+|.|.-..+-+..|.|..+|.++
T Consensus 236 ~~~~wsPnG~YiAAs~~~g~I~vWnv~t 263 (933)
T KOG1274|consen 236 SDLQWSPNGKYIAASTLDGQILVWNVDT 263 (933)
T ss_pred EEEEEcCCCcEEeeeccCCcEEEEeccc
Confidence 7899999995555556788898888884
|
|
| >PF01731 Arylesterase: Arylesterase; InterPro: IPR002640 The serum paraoxonases/arylesterases are enzymes that catalyse the hydrolysis of the toxic metabolites of a variety of organophosphorus insecticides | Back alignment and domain information |
|---|
Probab=95.07 E-value=0.18 Score=37.09 Aligned_cols=47 Identities=19% Similarity=0.292 Sum_probs=33.8
Q ss_pred cceEEEEECCCCcEEEEEecCCCCCCCCCccceEECCCCc-EEEEeCCCCeEEEEc
Q 020019 123 YSAVAAYDLSTWNRLFLTQLSGPSDGKSCADDVTVDAEGN-AYVTDVTGSKIWKVG 177 (332)
Q Consensus 123 ~~~l~~~d~~~g~~~~~~~l~~~~~~~~~~ndiavd~dG~-lyvtd~~~~~I~~v~ 177 (332)
-+.+.-||++. ... . ..+..+||||+++++++ |||++.....|+.+.
T Consensus 35 ~~~Vvyyd~~~--~~~---v---a~g~~~aNGI~~s~~~k~lyVa~~~~~~I~vy~ 82 (86)
T PF01731_consen 35 WGNVVYYDGKE--VKV---V---ASGFSFANGIAISPDKKYLYVASSLAHSIHVYK 82 (86)
T ss_pred CceEEEEeCCE--eEE---e---eccCCCCceEEEcCCCCEEEEEeccCCeEEEEE
Confidence 45566788642 211 1 23458999999999975 999999999888764
|
The enzymes hydrolyse a broad spectrum of organophosphate substrates, including paraoxon and a number of aromatic carboxylic acid esters (e.g., phenyl acetate), and hence confer resistance to organophosphate toxicity []. Mammals have 3 distinct paraoxonase types, termed PON1-3 [, ]. In mice and humans, the PON genes are found on the same chromosome in close proximity. PON activity has been found in variety of tissues, with highest levels in liver and serum - the source of serum PON is thought to be the liver. Unlike mammals, fish and avian species lack paraoxonase activity. Human and rabbit PONs appear to have two distinct Ca2+ binding sites, one required for stability and one required for catalytic activity. The Ca2+ dependency of PONs suggests a mechanism of hydrolysis where Ca2+ acts as the electrophillic catalyst, like that proposed for phospholipase A2. The paraoxonase enzymes, PON1 and PON3, are high density lipoprotein (HDL)- associated proteins capable of preventing oxidative modification of low density lipoproteins (LPL) []. Although PON2 has oxidative properties, the enzyme does not associate with HDL. Within a given species, PON1, PON2 and PON3 share ~60% amino acid sequence identity, whereas between mammalian species particular PONs (1,2 or 3) share 79-90% identity at the amino acid level. Human PON1 and PON3 share numerous conserved phosphorylation and N-glycosylation sites; however, it is not known whether the PON proteins are modified at these sites, or whether modification at these sites is required for activity in vivo []. This family consists of arylesterases (Also known as serum paraoxonase) 3.1.1.2 from EC. These enzymes hydrolyse organophosphorus esters such as paraoxon and are found in the liver and blood. They confer resistance to organophosphate toxicity []. Human arylesterase (PON1) P27169 from SWISSPROT is associated with HDL and may protect against LDL oxidation [].; GO: 0004064 arylesterase activity |
| >COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown] | Back alignment and domain information |
|---|
Probab=95.05 E-value=3.5 Score=39.72 Aligned_cols=142 Identities=18% Similarity=0.268 Sum_probs=74.7
Q ss_pred ceEECCCCcEEEEeCCCCeEEEEcCCCce-EEEecCCCCCCcccccCccccCeEEEccCc-eEEEEeCCCCeEEEEeCCC
Q 020019 154 DVTVDAEGNAYVTDVTGSKIWKVGVKGEF-LSIISSPLFTPKEWYKNLVGLNGIVYHPDG-FLIVIHTFSGNLFKIDIVD 231 (332)
Q Consensus 154 diavd~dG~lyvtd~~~~~I~~v~~~g~~-~~~~~~~~~~~p~~~~~~~~~nGi~~~~dG-~Lyva~~~~~~i~~id~~~ 231 (332)
.+..|+++ +.+.+.....+-.++.+|.. .+.- . .+...-.+.+++|| .+.+++ ....||.||.++
T Consensus 366 r~~~~~e~-~vigt~dgD~l~iyd~~~~e~kr~e-~----------~lg~I~av~vs~dGK~~vvaN-dr~el~vididn 432 (668)
T COG4946 366 RIQVDPEG-DVIGTNDGDKLGIYDKDGGEVKRIE-K----------DLGNIEAVKVSPDGKKVVVAN-DRFELWVIDIDN 432 (668)
T ss_pred EEccCCcc-eEEeccCCceEEEEecCCceEEEee-C----------CccceEEEEEcCCCcEEEEEc-CceEEEEEEecC
Confidence 34445553 55555555577777777543 3332 1 22345578899999 566665 567899999998
Q ss_pred CCCccceeEEEEecCCCCCCCCeEEEeCCCeEEEEeC------CceEEEEcCCCceEEEEEeeecCCCcccceEEEE--E
Q 020019 232 GVGEGEEIKLIRVAGGPLSFGDGLELLSPTKLVVAGN------PSARLVESSDGWETAAVVAKFSGPVHRLATAATV--K 303 (332)
Q Consensus 232 ~~~~~~~~~~v~~~g~~~~~pdGi~~~~dG~l~va~~------~~~~~v~~~dg~~~~~~~~~~~~~~~~~pt~va~--~ 303 (332)
+ .++.+.-+ ...--.+++..++++.+.=.- +++.+.....+ +.-.+... ...++ +-+| +
T Consensus 433 g-----nv~~idkS--~~~lItdf~~~~nsr~iAYafP~gy~tq~Iklydm~~~-Kiy~vTT~---ta~Df--sPaFD~d 499 (668)
T COG4946 433 G-----NVRLIDKS--EYGLITDFDWHPNSRWIAYAFPEGYYTQSIKLYDMDGG-KIYDVTTP---TAYDF--SPAFDPD 499 (668)
T ss_pred C-----CeeEeccc--ccceeEEEEEcCCceeEEEecCcceeeeeEEEEecCCC-eEEEecCC---ccccc--CcccCCC
Confidence 8 34545433 112234566667665443332 22333333333 22222211 11222 2355 5
Q ss_pred CCeEEEEEecCccccCCc
Q 020019 304 DGRVYLNHMLGFGYPKKK 321 (332)
Q Consensus 304 ~g~lyv~~~~g~~~~~~~ 321 (332)
++.||.-+....+.+.++
T Consensus 500 ~ryLYfLs~RsLdPs~Dr 517 (668)
T COG4946 500 GRYLYFLSARSLDPSNDR 517 (668)
T ss_pred CcEEEEEeccccCCCCCe
Confidence 677887665566655554
|
|
| >KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=95.04 E-value=1.1 Score=41.75 Aligned_cols=154 Identities=11% Similarity=0.084 Sum_probs=94.0
Q ss_pred cceEEcCCCCEEEEEecCCeEEEEECCCCCCCccceeeeEEecccCcCCCccceEEEeCCCCeEEEEEeCcCCCccceEE
Q 020019 48 ECAKWDDSGRRFIVSFLDGGIGQVAVPDDYPPGTVLEEVTLVKDLELTGNGSLGLVLDHPRNRLLVVAADVFGNKYSAVA 127 (332)
Q Consensus 48 egia~d~~g~~~~~~~~~g~I~~vd~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~vd~~~g~l~v~~~~~~~~~~~~l~ 127 (332)
-++.|+|+|..+++...+.++..+|+.+.+. .. +.-.. -+.+..++..|| |.. ++.+- ..+.|.
T Consensus 119 l~~~fsp~g~~l~tGsGD~TvR~WD~~TeTp----~~--t~KgH----~~WVlcvawsPD-gk~-iASG~----~dg~I~ 182 (480)
T KOG0271|consen 119 LSVQFSPTGSRLVTGSGDTTVRLWDLDTETP----LF--TCKGH----KNWVLCVAWSPD-GKK-IASGS----KDGSIR 182 (480)
T ss_pred EEEEecCCCceEEecCCCceEEeeccCCCCc----ce--eecCC----ccEEEEEEECCC-cch-hhccc----cCCeEE
Confidence 4578999999888777778888888876541 11 11110 035789999997 884 44332 356788
Q ss_pred EEECCCCcEEEEEecCCCCCCCCCccceE-----ECCCCcEEEEeCCCCeEEEEcCCCceEEEecCCCCCCcccccCccc
Q 020019 128 AYDLSTWNRLFLTQLSGPSDGKSCADDVT-----VDAEGNAYVTDVTGSKIWKVGVKGEFLSIISSPLFTPKEWYKNLVG 202 (332)
Q Consensus 128 ~~d~~~g~~~~~~~l~~~~~~~~~~ndia-----vd~dG~lyvtd~~~~~I~~v~~~g~~~~~~~~~~~~~p~~~~~~~~ 202 (332)
.||+++|+..-. .|.+.. .--++++ .+|..+.+.+.+..|.|...|..++...+.-.. ....
T Consensus 183 lwdpktg~~~g~-~l~gH~---K~It~Lawep~hl~p~~r~las~skDg~vrIWd~~~~~~~~~lsg---------HT~~ 249 (480)
T KOG0271|consen 183 LWDPKTGQQIGR-ALRGHK---KWITALAWEPLHLVPPCRRLASSSKDGSVRIWDTKLGTCVRTLSG---------HTAS 249 (480)
T ss_pred EecCCCCCcccc-cccCcc---cceeEEeecccccCCCccceecccCCCCEEEEEccCceEEEEecc---------Cccc
Confidence 999999876532 332211 1223333 356667888888889888888875433332111 0122
Q ss_pred cCeEEEccCceEEEEeCCCCeEEEEeCCC
Q 020019 203 LNGIVYHPDGFLIVIHTFSGNLFKIDIVD 231 (332)
Q Consensus 203 ~nGi~~~~dG~Lyva~~~~~~i~~id~~~ 231 (332)
...|.+..+|.||-+ +..++|-.++...
T Consensus 250 VTCvrwGG~gliySg-S~DrtIkvw~a~d 277 (480)
T KOG0271|consen 250 VTCVRWGGEGLIYSG-SQDRTIKVWRALD 277 (480)
T ss_pred eEEEEEcCCceEEec-CCCceEEEEEccc
Confidence 468888877777755 4455554444443
|
|
| >KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=95.00 E-value=1.2 Score=40.77 Aligned_cols=186 Identities=12% Similarity=0.092 Sum_probs=105.7
Q ss_pred cCCCCEEEEEecCCeEEEEECCCCCCCccceeeeEEecc-cCcCCCccceEEEeCCCCe-EEEEEeCcCCCccceEEEEE
Q 020019 53 DDSGRRFIVSFLDGGIGQVAVPDDYPPGTVLEEVTLVKD-LELTGNGSLGLVLDHPRNR-LLVVAADVFGNKYSAVAAYD 130 (332)
Q Consensus 53 d~~g~~~~~~~~~g~I~~vd~~~~~~~~~~~~~~~~~~~-~~~~~~~~~gi~vd~~~g~-l~v~~~~~~~~~~~~l~~~d 130 (332)
.|+.++|.++..+.-|+.+|.-+++.+.. ...... .+. .+...+.+.+| |. ||...+ ..|.+||
T Consensus 120 qP~t~l~a~ssr~~PIh~wdaftG~lraS----y~~ydh~de~--taAhsL~Fs~D-GeqlfaGyk-------rcirvFd 185 (406)
T KOG2919|consen 120 QPSTNLFAVSSRDQPIHLWDAFTGKLRAS----YRAYDHQDEY--TAAHSLQFSPD-GEQLFAGYK-------RCIRVFD 185 (406)
T ss_pred CCccceeeeccccCceeeeeccccccccc----hhhhhhHHhh--hhheeEEecCC-CCeEeeccc-------ceEEEee
Confidence 56667776666677899999888774210 011111 111 25778999997 65 444433 4788999
Q ss_pred C-CCCcEEEEEe-c-CCCCCCCCCccceEECCCC-cEEEEeCCCCeEEEEcCCC-ceEEEecCCCCCCcccccCccccCe
Q 020019 131 L-STWNRLFLTQ-L-SGPSDGKSCADDVTVDAEG-NAYVTDVTGSKIWKVGVKG-EFLSIISSPLFTPKEWYKNLVGLNG 205 (332)
Q Consensus 131 ~-~~g~~~~~~~-l-~~~~~~~~~~ndiavd~dG-~lyvtd~~~~~I~~v~~~g-~~~~~~~~~~~~~p~~~~~~~~~nG 205 (332)
. ++|..-.... + .+.....+.-..+++.|-. ..+..-+....+-.+.-++ +...++.. ...+..-
T Consensus 186 t~RpGr~c~vy~t~~~~k~gq~giisc~a~sP~~~~~~a~gsY~q~~giy~~~~~~pl~llgg----------h~gGvTh 255 (406)
T KOG2919|consen 186 TSRPGRDCPVYTTVTKGKFGQKGIISCFAFSPMDSKTLAVGSYGQRVGIYNDDGRRPLQLLGG----------HGGGVTH 255 (406)
T ss_pred ccCCCCCCcchhhhhcccccccceeeeeeccCCCCcceeeecccceeeeEecCCCCceeeecc----------cCCCeee
Confidence 8 6775322211 1 1000112345557777754 3565555555544444443 34433321 2346778
Q ss_pred EEEccCc-eEEEEeCCCCeEEEEeCCCCCCccceeEEEEecCCCC-CCCCeEEE--eCCCeEEEEeC
Q 020019 206 IVYHPDG-FLIVIHTFSGNLFKIDIVDGVGEGEEIKLIRVAGGPL-SFGDGLEL--LSPTKLVVAGN 268 (332)
Q Consensus 206 i~~~~dG-~Lyva~~~~~~i~~id~~~~~~~~~~~~~v~~~g~~~-~~pdGi~~--~~dG~l~va~~ 268 (332)
+.|.+|| .||+...-..+|..+|+..-+ ..+ +.+.+ .. ..-.-|-+ +++|++.+++.
T Consensus 256 L~~~edGn~lfsGaRk~dkIl~WDiR~~~---~pv--~~L~r-hv~~TNQRI~FDld~~~~~LasG~ 316 (406)
T KOG2919|consen 256 LQWCEDGNKLFSGARKDDKILCWDIRYSR---DPV--YALER-HVGDTNQRILFDLDPKGEILASGD 316 (406)
T ss_pred EEeccCcCeecccccCCCeEEEEeehhcc---chh--hhhhh-hccCccceEEEecCCCCceeeccC
Confidence 8999999 999988888899999887431 111 22221 11 12234555 47788888874
|
|
| >PRK13684 Ycf48-like protein; Provisional | Back alignment and domain information |
|---|
Probab=94.97 E-value=3.1 Score=38.77 Aligned_cols=188 Identities=11% Similarity=0.043 Sum_probs=91.6
Q ss_pred cccceEEcCCCCEEEEEecCCeEEEEECCCCCCCccceeeeEEecc-cCc--CCCccceEEEeCCCCeEEEEEeCcCCCc
Q 020019 46 FRECAKWDDSGRRFIVSFLDGGIGQVAVPDDYPPGTVLEEVTLVKD-LEL--TGNGSLGLVLDHPRNRLLVVAADVFGNK 122 (332)
Q Consensus 46 ~pegia~d~~g~~~~~~~~~g~I~~vd~~~~~~~~~~~~~~~~~~~-~~~--~~~~~~gi~vd~~~g~l~v~~~~~~~~~ 122 (332)
...++++..+.+.|++.. .|.|++=. ++++ +|... ... .......+.+++ +..|++..
T Consensus 47 ~l~~v~F~d~~~g~avG~-~G~il~T~-DgG~---------tW~~~~~~~~~~~~~l~~v~~~~--~~~~~~G~------ 107 (334)
T PRK13684 47 NLLDIAFTDPNHGWLVGS-NRTLLETN-DGGE---------TWEERSLDLPEENFRLISISFKG--DEGWIVGQ------ 107 (334)
T ss_pred ceEEEEEeCCCcEEEEEC-CCEEEEEc-CCCC---------CceECccCCcccccceeeeEEcC--CcEEEeCC------
Confidence 556788877667676553 47777764 3343 12211 111 112345677764 34576632
Q ss_pred cceEEEEECCCCcEEEEEecCCCCCCCCCccceEECCCCcEEEEeCCCCeEEEEcCCCceEEEecCCCCCCcccccCccc
Q 020019 123 YSAVAAYDLSTWNRLFLTQLSGPSDGKSCADDVTVDAEGNAYVTDVTGSKIWKVGVKGEFLSIISSPLFTPKEWYKNLVG 202 (332)
Q Consensus 123 ~~~l~~~d~~~g~~~~~~~l~~~~~~~~~~ndiavd~dG~lyvtd~~~~~I~~v~~~g~~~~~~~~~~~~~p~~~~~~~~ 202 (332)
.+.|++ -.+.|+-....... ......+..+....++.+|+.. ..+.|++-+..|+.=.....+ ....
T Consensus 108 ~g~i~~-S~DgG~tW~~~~~~--~~~~~~~~~i~~~~~~~~~~~g-~~G~i~~S~DgG~tW~~~~~~---------~~g~ 174 (334)
T PRK13684 108 PSLLLH-TTDGGKNWTRIPLS--EKLPGSPYLITALGPGTAEMAT-NVGAIYRTTDGGKNWEALVED---------AAGV 174 (334)
T ss_pred CceEEE-ECCCCCCCeEccCC--cCCCCCceEEEEECCCcceeee-ccceEEEECCCCCCceeCcCC---------Ccce
Confidence 223333 22223322222211 0001122333333334556553 457787776666632211111 1124
Q ss_pred cCeEEEccCceEEEEeCCCCeEEEEeCCCCCCccceeEEEEecCCCCCCCCeEEEeCCCeEEEEeCCceE
Q 020019 203 LNGIVYHPDGFLIVIHTFSGNLFKIDIVDGVGEGEEIKLIRVAGGPLSFGDGLELLSPTKLVVAGNPSAR 272 (332)
Q Consensus 203 ~nGi~~~~dG~Lyva~~~~~~i~~id~~~~~~~~~~~~~v~~~g~~~~~pdGi~~~~dG~l~va~~~~~~ 272 (332)
.+++.+.++|.+++. ...+.+++-..+.++ .-+.+..+ ......++++.++|++|++......
T Consensus 175 ~~~i~~~~~g~~v~~-g~~G~i~~s~~~gg~----tW~~~~~~--~~~~l~~i~~~~~g~~~~vg~~G~~ 237 (334)
T PRK13684 175 VRNLRRSPDGKYVAV-SSRGNFYSTWEPGQT----AWTPHQRN--SSRRLQSMGFQPDGNLWMLARGGQI 237 (334)
T ss_pred EEEEEECCCCeEEEE-eCCceEEEEcCCCCC----eEEEeeCC--CcccceeeeEcCCCCEEEEecCCEE
Confidence 578888888844433 345677764223221 12223222 2245678888889999998876544
|
|
| >KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=94.91 E-value=0.94 Score=45.47 Aligned_cols=180 Identities=12% Similarity=0.118 Sum_probs=107.4
Q ss_pred eEEcCCCCEEEEEecCCeEEEEECCCCCCCccceeeeEEec-ccCcCCCccceEEEeCCCCeEEEEEeCcCCCccceEEE
Q 020019 50 AKWDDSGRRFIVSFLDGGIGQVAVPDDYPPGTVLEEVTLVK-DLELTGNGSLGLVLDHPRNRLLVVAADVFGNKYSAVAA 128 (332)
Q Consensus 50 ia~d~~g~~~~~~~~~g~I~~vd~~~~~~~~~~~~~~~~~~-~~~~~~~~~~gi~vd~~~g~l~v~~~~~~~~~~~~l~~ 128 (332)
++|+++|..+|+.. +.+|-.+|..++.. .+.. .++- ..-.-.+++++++..||.+.. ...+.+
T Consensus 25 ~~~s~nG~~L~t~~-~d~Vi~idv~t~~~--------~l~s~~~ed-~d~ita~~l~~d~~~L~~a~r------s~llrv 88 (775)
T KOG0319|consen 25 VAWSSNGQHLYTAC-GDRVIIIDVATGSI--------ALPSGSNED-EDEITALALTPDEEVLVTASR------SQLLRV 88 (775)
T ss_pred eeECCCCCEEEEec-CceEEEEEccCCce--------ecccCCccc-hhhhheeeecCCccEEEEeec------cceEEE
Confidence 78999999888765 46788888776652 1111 1110 013457888998667777654 345778
Q ss_pred EECCCCcEEEEEecCCCCCCCCCccceEECCCCcEEEEeCCCCeEEEEcCCCceEEE--ecCCCCCCcccccCccccCeE
Q 020019 129 YDLSTWNRLFLTQLSGPSDGKSCADDVTVDAEGNAYVTDVTGSKIWKVGVKGEFLSI--ISSPLFTPKEWYKNLVGLNGI 206 (332)
Q Consensus 129 ~d~~~g~~~~~~~l~~~~~~~~~~ndiavd~dG~lyvtd~~~~~I~~v~~~g~~~~~--~~~~~~~~p~~~~~~~~~nGi 206 (332)
|.+++|++...+... . ..-.--+++||.|.+..+-...+.|-+.|-++..-.. .+.+. -.--+
T Consensus 89 ~~L~tgk~irswKa~--H--e~Pvi~ma~~~~g~LlAtggaD~~v~VWdi~~~~~th~fkG~gG-----------vVssl 153 (775)
T KOG0319|consen 89 WSLPTGKLIRSWKAI--H--EAPVITMAFDPTGTLLATGGADGRVKVWDIKNGYCTHSFKGHGG-----------VVSSL 153 (775)
T ss_pred EEcccchHhHhHhhc--c--CCCeEEEEEcCCCceEEeccccceEEEEEeeCCEEEEEecCCCc-----------eEEEE
Confidence 999999766544321 0 1122348999998777776667887777776553322 11111 13467
Q ss_pred EEccCc--eEEEEeCCCCeEEEEeCCCCCCccceeEEEEecCCCCCCCCeEEEeCCCeEEEE
Q 020019 207 VYHPDG--FLIVIHTFSGNLFKIDIVDGVGEGEEIKLIRVAGGPLSFGDGLELLSPTKLVVA 266 (332)
Q Consensus 207 ~~~~dG--~Lyva~~~~~~i~~id~~~~~~~~~~~~~v~~~g~~~~~pdGi~~~~dG~l~va 266 (332)
.|+|+- .|.++....+++..+++.+.... + .... .+.+...++++.+|+.-.++
T Consensus 154 ~F~~~~~~~lL~sg~~D~~v~vwnl~~~~tc---l--~~~~-~H~S~vtsL~~~~d~~~~ls 209 (775)
T KOG0319|consen 154 LFHPHWNRWLLASGATDGTVRVWNLNDKRTC---L--HTMI-LHKSAVTSLAFSEDSLELLS 209 (775)
T ss_pred EeCCccchhheeecCCCceEEEEEcccCchH---H--HHHH-hhhhheeeeeeccCCceEEE
Confidence 788875 45566677888888888854210 1 0111 13344556666666543333
|
|
| >COG4247 Phy 3-phytase (myo-inositol-hexaphosphate 3-phosphohydrolase) [Lipid metabolism] | Back alignment and domain information |
|---|
Probab=94.75 E-value=2.9 Score=37.22 Aligned_cols=115 Identities=13% Similarity=0.252 Sum_probs=62.0
Q ss_pred EeCCCC--eEEEEcCCCceEEEecCCCCCCcccccCccccCeEEEccC---c--eEEEEeCCCCeEEEEeCC---CCCCc
Q 020019 166 TDVTGS--KIWKVGVKGEFLSIISSPLFTPKEWYKNLVGLNGIVYHPD---G--FLIVIHTFSGNLFKIDIV---DGVGE 235 (332)
Q Consensus 166 td~~~~--~I~~v~~~g~~~~~~~~~~~~~p~~~~~~~~~nGi~~~~d---G--~Lyva~~~~~~i~~id~~---~~~~~ 235 (332)
+|..+. .+|++|++-+.+.-+.++.- |- ......+.|+|+..+ | +++|+... +.|..+.+. .++..
T Consensus 119 SdR~~~~i~~y~Idp~~~~L~sitD~n~--p~-ss~~s~~YGl~lyrs~ktgd~yvfV~~~q-G~~~Qy~l~d~gnGkv~ 194 (364)
T COG4247 119 SDRQNDKIVFYKIDPNPQYLESITDSNA--PY-SSSSSSAYGLALYRSPKTGDYYVFVNRRQ-GDIAQYKLIDQGNGKVG 194 (364)
T ss_pred ccccCCeEEEEEeCCCccceeeccCCCC--cc-ccCcccceeeEEEecCCcCcEEEEEecCC-CceeEEEEEecCCceEc
Confidence 344444 35678877443332222110 10 113445788888654 4 56665544 667665554 23333
Q ss_pred cceeEEEEecCCCCCCCCeEEEeCC-CeEEEEe-CCceEEEEc--CCCceEEEEEeee
Q 020019 236 GEEIKLIRVAGGPLSFGDGLELLSP-TKLVVAG-NPSARLVES--SDGWETAAVVAKF 289 (332)
Q Consensus 236 ~~~~~~v~~~g~~~~~pdGi~~~~d-G~l~va~-~~~~~~v~~--~dg~~~~~~~~~~ 289 (332)
++.++.+.++ ....||..|.+ |.||++. +..+|.... ..| ..++++.++
T Consensus 195 ~k~vR~fk~~----tQTEG~VaDdEtG~LYIaeEdvaiWK~~Aep~~G-~~g~~idr~ 247 (364)
T COG4247 195 TKLVRQFKIP----TQTEGMVADDETGFLYIAEEDVAIWKYEAEPNRG-NTGRLIDRI 247 (364)
T ss_pred ceeeEeeecC----CcccceeeccccceEEEeeccceeeecccCCCCC-Cccchhhhh
Confidence 3455656655 24579988866 9999997 455665432 223 444555443
|
|
| >COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=94.56 E-value=4.8 Score=38.94 Aligned_cols=157 Identities=16% Similarity=0.185 Sum_probs=84.7
Q ss_pred cccceEEcCCCCEE-EEEe--cC-CeEEEEECCCCCCCccceeeeEEecccCcCCCccceEEEeCCCCeEEEEEeCcCCC
Q 020019 46 FRECAKWDDSGRRF-IVSF--LD-GGIGQVAVPDDYPPGTVLEEVTLVKDLELTGNGSLGLVLDHPRNRLLVVAADVFGN 121 (332)
Q Consensus 46 ~pegia~d~~g~~~-~~~~--~~-g~I~~vd~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~vd~~~g~l~v~~~~~~~~ 121 (332)
......|.+++..+ |... .. .+|++++..+++. + ...+.++ .-....+.|+..+|.++....
T Consensus 194 ~~~~p~ws~~~~~~~y~~f~~~~~~~i~~~~l~~g~~-----~--~i~~~~g----~~~~P~fspDG~~l~f~~~rd--- 259 (425)
T COG0823 194 LILTPAWSPDGKKLAYVSFELGGCPRIYYLDLNTGKR-----P--VILNFNG----NNGAPAFSPDGSKLAFSSSRD--- 259 (425)
T ss_pred ceeccccCcCCCceEEEEEecCCCceEEEEeccCCcc-----c--eeeccCC----ccCCccCCCCCCEEEEEECCC---
Confidence 44557788887643 4442 22 4699999887763 1 2332222 122345667633444443321
Q ss_pred ccceEEEEECCCCcEEEEEecCCCCCCCCCccceEECCCCc-EEE-EeCC-CCeEEEEcCCCceEEEecCCCCCCccccc
Q 020019 122 KYSAVAAYDLSTWNRLFLTQLSGPSDGKSCADDVTVDAEGN-AYV-TDVT-GSKIWKVGVKGEFLSIISSPLFTPKEWYK 198 (332)
Q Consensus 122 ~~~~l~~~d~~~g~~~~~~~l~~~~~~~~~~ndiavd~dG~-lyv-td~~-~~~I~~v~~~g~~~~~~~~~~~~~p~~~~ 198 (332)
....|+.+|+.+++........ ..-..-.+.|||+ |++ +|.. ...||+++.+|+..+.+....
T Consensus 260 g~~~iy~~dl~~~~~~~Lt~~~------gi~~~Ps~spdG~~ivf~Sdr~G~p~I~~~~~~g~~~~riT~~~-------- 325 (425)
T COG0823 260 GSPDIYLMDLDGKNLPRLTNGF------GINTSPSWSPDGSKIVFTSDRGGRPQIYLYDLEGSQVTRLTFSG-------- 325 (425)
T ss_pred CCccEEEEcCCCCcceecccCC------ccccCccCCCCCCEEEEEeCCCCCcceEEECCCCCceeEeeccC--------
Confidence 2456999999877643322211 1111566789995 544 5543 458999999987544332211
Q ss_pred CccccCeEEEccCc-eEEEEeCCCCe--EEEEeCCCC
Q 020019 199 NLVGLNGIVYHPDG-FLIVIHTFSGN--LFKIDIVDG 232 (332)
Q Consensus 199 ~~~~~nGi~~~~dG-~Lyva~~~~~~--i~~id~~~~ 232 (332)
.+..--.++||| .+-+.....+. |...++..+
T Consensus 326 --~~~~~p~~SpdG~~i~~~~~~~g~~~i~~~~~~~~ 360 (425)
T COG0823 326 --GGNSNPVWSPDGDKIVFESSSGGQWDIDKNDLASG 360 (425)
T ss_pred --CCCcCccCCCCCCEEEEEeccCCceeeEEeccCCC
Confidence 111133588999 55555443444 455555544
|
|
| >KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=94.45 E-value=4.2 Score=37.80 Aligned_cols=183 Identities=14% Similarity=0.086 Sum_probs=105.6
Q ss_pred cccceEEcCCCCEEEEEecCCeEEEEECCCCCCCccceeeeEEecccCcCCCccceEEEeCCCCeEEEEEeCcCCCccce
Q 020019 46 FRECAKWDDSGRRFIVSFLDGGIGQVAVPDDYPPGTVLEEVTLVKDLELTGNGSLGLVLDHPRNRLLVVAADVFGNKYSA 125 (332)
Q Consensus 46 ~pegia~d~~g~~~~~~~~~g~I~~vd~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~vd~~~g~l~v~~~~~~~~~~~~ 125 (332)
+..+++++|-..+|.++..++.|-.+|..+++. . .++.... ..+.|+++.+. .- |+-..+ ....
T Consensus 153 WVr~vavdP~n~wf~tgs~DrtikIwDlatg~L-----k-ltltGhi----~~vr~vavS~r-Hp-YlFs~g----edk~ 216 (460)
T KOG0285|consen 153 WVRSVAVDPGNEWFATGSADRTIKIWDLATGQL-----K-LTLTGHI----ETVRGVAVSKR-HP-YLFSAG----EDKQ 216 (460)
T ss_pred eEEEEeeCCCceeEEecCCCceeEEEEcccCeE-----E-Eeecchh----heeeeeeeccc-Cc-eEEEec----CCCe
Confidence 778899999755444457788999999988873 1 1221111 14689999874 33 433332 1346
Q ss_pred EEEEECCCCcEEEEEecCCCCCCCCCccceEECCCCcEEEEeCCCCeEEEEcCCCceEEEecC-CCCCCcccccCccccC
Q 020019 126 VAAYDLSTWNRLFLTQLSGPSDGKSCADDVTVDAEGNAYVTDVTGSKIWKVGVKGEFLSIISS-PLFTPKEWYKNLVGLN 204 (332)
Q Consensus 126 l~~~d~~~g~~~~~~~l~~~~~~~~~~ndiavd~dG~lyvtd~~~~~I~~v~~~g~~~~~~~~-~~~~~p~~~~~~~~~n 204 (332)
+..||++..++++.+- .-.+....+++.|--++.+|......+...|...+.....-. ... ..+
T Consensus 217 VKCwDLe~nkvIR~Yh-----GHlS~V~~L~lhPTldvl~t~grDst~RvWDiRtr~~V~~l~GH~~----------~V~ 281 (460)
T KOG0285|consen 217 VKCWDLEYNKVIRHYH-----GHLSGVYCLDLHPTLDVLVTGGRDSTIRVWDIRTRASVHVLSGHTN----------PVA 281 (460)
T ss_pred eEEEechhhhhHHHhc-----cccceeEEEeccccceeEEecCCcceEEEeeecccceEEEecCCCC----------cce
Confidence 7889998877654321 113455668888876788888776666666665554332111 011 122
Q ss_pred eEEEcc-CceEEEEeCCCCeEEEEeCCCCCCccceeEEEEecCCCCCCCCeEEEeCCCeEEEEe
Q 020019 205 GIVYHP-DGFLIVIHTFSGNLFKIDIVDGVGEGEEIKLIRVAGGPLSFGDGLELLSPTKLVVAG 267 (332)
Q Consensus 205 Gi~~~~-dG~Lyva~~~~~~i~~id~~~~~~~~~~~~~v~~~g~~~~~pdGi~~~~dG~l~va~ 267 (332)
-+.+.+ |+.+|-+. ...+|.-+|+..++. ...+. ........+++.|+-.+|.+.
T Consensus 282 ~V~~~~~dpqvit~S-~D~tvrlWDl~agkt----~~tlt---~hkksvral~lhP~e~~fASa 337 (460)
T KOG0285|consen 282 SVMCQPTDPQVITGS-HDSTVRLWDLRAGKT----MITLT---HHKKSVRALCLHPKENLFASA 337 (460)
T ss_pred eEEeecCCCceEEec-CCceEEEeeeccCce----eEeee---cccceeeEEecCCchhhhhcc
Confidence 333333 44777654 455677778876632 21111 112344566667766666664
|
|
| >KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=94.42 E-value=0.45 Score=44.55 Aligned_cols=182 Identities=13% Similarity=0.151 Sum_probs=109.7
Q ss_pred cceEEcCCCCEEEEEecCCeEEEEECCCCCCCccceeeeEEecccCcCCCccceEEEeCCCCeEEEEEeCcCCCccceEE
Q 020019 48 ECAKWDDSGRRFIVSFLDGGIGQVAVPDDYPPGTVLEEVTLVKDLELTGNGSLGLVLDHPRNRLLVVAADVFGNKYSAVA 127 (332)
Q Consensus 48 egia~d~~g~~~~~~~~~g~I~~vd~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~vd~~~g~l~v~~~~~~~~~~~~l~ 127 (332)
..+.|.|+|+.+++...+|+.--+....-. .| +....=+ ..+.+|....+ ++ |...++ ..+.|.
T Consensus 100 ~~v~WtPeGRRLltgs~SGEFtLWNg~~fn-----FE--tilQaHD---s~Vr~m~ws~~-g~-wmiSgD----~gG~iK 163 (464)
T KOG0284|consen 100 NVVRWTPEGRRLLTGSQSGEFTLWNGTSFN-----FE--TILQAHD---SPVRTMKWSHN-GT-WMISGD----KGGMIK 163 (464)
T ss_pred eeEEEcCCCceeEeecccccEEEecCceee-----HH--HHhhhhc---ccceeEEEccC-CC-EEEEcC----CCceEE
Confidence 457899999999888778887777532211 12 1221111 14678999885 66 666554 245677
Q ss_pred EEECCCCcEEEEEecCCCCCCCCCccceEECCCCcEEEEeCCCCeEEEEcCC-CceEEEecCCCCCCcccccCccccCeE
Q 020019 128 AYDLSTWNRLFLTQLSGPSDGKSCADDVTVDAEGNAYVTDVTGSKIWKVGVK-GEFLSIISSPLFTPKEWYKNLVGLNGI 206 (332)
Q Consensus 128 ~~d~~~g~~~~~~~l~~~~~~~~~~ndiavd~dG~lyvtd~~~~~I~~v~~~-g~~~~~~~~~~~~~p~~~~~~~~~nGi 206 (332)
.|+++-.-+.. ++- -......|+++.|+...|+|.+..|.|...|.. .+..+.+.... --+..+
T Consensus 164 yWqpnmnnVk~-~~a----hh~eaIRdlafSpnDskF~t~SdDg~ikiWdf~~~kee~vL~GHg----------wdVksv 228 (464)
T KOG0284|consen 164 YWQPNMNNVKI-IQA----HHAEAIRDLAFSPNDSKFLTCSDDGTIKIWDFRMPKEERVLRGHG----------WDVKSV 228 (464)
T ss_pred ecccchhhhHH-hhH----hhhhhhheeccCCCCceeEEecCCCeEEEEeccCCchhheeccCC----------CCccee
Confidence 88886433321 111 012456789999988899999998888776643 33333332111 124588
Q ss_pred EEccCceEEEEeCCCCeEEEEeCCCCCCccceeEEEEecCCCCCCCCeEEEeCCCeEEEEe
Q 020019 207 VYHPDGFLIVIHTFSGNLFKIDIVDGVGEGEEIKLIRVAGGPLSFGDGLELLSPTKLVVAG 267 (332)
Q Consensus 207 ~~~~dG~Lyva~~~~~~i~~id~~~~~~~~~~~~~v~~~g~~~~~pdGi~~~~dG~l~va~ 267 (332)
.|+|...|.++-...+.|--+|+.++. -+..+. ......-++.+.+++++..+.
T Consensus 229 dWHP~kgLiasgskDnlVKlWDprSg~----cl~tlh---~HKntVl~~~f~~n~N~Llt~ 282 (464)
T KOG0284|consen 229 DWHPTKGLIASGSKDNLVKLWDPRSGS----CLATLH---GHKNTVLAVKFNPNGNWLLTG 282 (464)
T ss_pred ccCCccceeEEccCCceeEeecCCCcc----hhhhhh---hccceEEEEEEcCCCCeeEEc
Confidence 999988677766767766667888762 221111 122345567777777666664
|
|
| >TIGR02276 beta_rpt_yvtn 40-residue YVTN family beta-propeller repeat | Back alignment and domain information |
|---|
Probab=94.39 E-value=0.27 Score=30.28 Aligned_cols=41 Identities=17% Similarity=0.151 Sum_probs=29.4
Q ss_pred CCCeEEEEEeCcCCCccceEEEEECCCCcEEEEEecCCCCCCCCCccceEEC
Q 020019 107 PRNRLLVVAADVFGNKYSAVAAYDLSTWNRLFLTQLSGPSDGKSCADDVTVD 158 (332)
Q Consensus 107 ~~g~l~v~~~~~~~~~~~~l~~~d~~~g~~~~~~~l~~~~~~~~~~ndiavd 158 (332)
+.++||+++.. .+.|.++|.++++....+.+ ...|.+++++
T Consensus 2 d~~~lyv~~~~-----~~~v~~id~~~~~~~~~i~v------g~~P~~i~~~ 42 (42)
T TIGR02276 2 DGTKLYVTNSG-----SNTVSVIDTATNKVIATIPV------GGYPFGVAVS 42 (42)
T ss_pred CCCEEEEEeCC-----CCEEEEEECCCCeEEEEEEC------CCCCceEEeC
Confidence 34789999864 45788999988887766655 2466777764
|
This repeat of about 40 amino acids is found in up to 14 copies per protein. Archaea Methanosarcina mazei and Methanosarcina acetivorans each have over 10 genes that encode tandem copies of this repeat, which is also found in other species. PSIPRED predicts with high confidence that each 40-residue repeats contains four beta strands. This model overlaps somewhat with the NHL repeat (Pfam pfam01436) and also shows sequence similarity to the WD domain, G-beta repeat (Pfam pfam00400). |
| >KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=94.38 E-value=5 Score=38.49 Aligned_cols=146 Identities=17% Similarity=0.191 Sum_probs=93.5
Q ss_pred cccceEEcCCCCEEEEEecCCeEEEEECCCCCCCccceeeeEEecccCcCCC-ccceEEEeCCCCeEEEEEeCcCCCccc
Q 020019 46 FRECAKWDDSGRRFIVSFLDGGIGQVAVPDDYPPGTVLEEVTLVKDLELTGN-GSLGLVLDHPRNRLLVVAADVFGNKYS 124 (332)
Q Consensus 46 ~pegia~d~~g~~~~~~~~~g~I~~vd~~~~~~~~~~~~~~~~~~~~~~~~~-~~~gi~vd~~~g~l~v~~~~~~~~~~~ 124 (332)
...+++|..+|+++.+...+|.+..++.++... . ++.. ++ ....|....+ |+ |+..++. .+
T Consensus 237 dVT~L~Wn~~G~~LatG~~~G~~riw~~~G~l~-----~--tl~~-----HkgPI~slKWnk~-G~-yilS~~v----D~ 298 (524)
T KOG0273|consen 237 DVTSLDWNNDGTLLATGSEDGEARIWNKDGNLI-----S--TLGQ-----HKGPIFSLKWNKK-GT-YILSGGV----DG 298 (524)
T ss_pred CcceEEecCCCCeEEEeecCcEEEEEecCchhh-----h--hhhc-----cCCceEEEEEcCC-CC-EEEeccC----Cc
Confidence 456799999999998888889988888764321 1 2221 22 3478888885 77 6555542 34
Q ss_pred eEEEEECCCCcEEEEEecCCCCCCCCCc-cceEECCCCcEEEEeCCCCeEE--EEcCCCceEEEecCCCCCCcccccCcc
Q 020019 125 AVAAYDLSTWNRLFLTQLSGPSDGKSCA-DDVTVDAEGNAYVTDVTGSKIW--KVGVKGEFLSIISSPLFTPKEWYKNLV 201 (332)
Q Consensus 125 ~l~~~d~~~g~~~~~~~l~~~~~~~~~~-ndiavd~dG~lyvtd~~~~~I~--~v~~~g~~~~~~~~~~~~~p~~~~~~~ 201 (332)
.+..||..+|+..+.+.+.. .| -|+..-.+ .-|++....+.|+ +++.++-...+..+ ..
T Consensus 299 ttilwd~~~g~~~q~f~~~s------~~~lDVdW~~~-~~F~ts~td~~i~V~kv~~~~P~~t~~GH-----------~g 360 (524)
T KOG0273|consen 299 TTILWDAHTGTVKQQFEFHS------APALDVDWQSN-DEFATSSTDGCIHVCKVGEDRPVKTFIGH-----------HG 360 (524)
T ss_pred cEEEEeccCceEEEeeeecc------CCccceEEecC-ceEeecCCCceEEEEEecCCCcceeeecc-----------cC
Confidence 57789999998887777631 22 23333222 3566666666554 45555434444332 22
Q ss_pred ccCeEEEccCceEEEEeCCCCeEEEE
Q 020019 202 GLNGIVYHPDGFLIVIHTFSGNLFKI 227 (332)
Q Consensus 202 ~~nGi~~~~dG~Lyva~~~~~~i~~i 227 (332)
-.++|.|+|.|.|..+.+..+++--+
T Consensus 361 ~V~alk~n~tg~LLaS~SdD~TlkiW 386 (524)
T KOG0273|consen 361 EVNALKWNPTGSLLASCSDDGTLKIW 386 (524)
T ss_pred ceEEEEECCCCceEEEecCCCeeEee
Confidence 36899999999888888887766333
|
|
| >PHA02713 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=94.37 E-value=6.3 Score=39.56 Aligned_cols=180 Identities=11% Similarity=0.129 Sum_probs=88.8
Q ss_pred CCCEEEEE-ec-----CCeEEEEECCCCCCCccceeeeEEecccCcC-CCccceEEEeCCCCeEEEEEeCcCCCccceEE
Q 020019 55 SGRRFIVS-FL-----DGGIGQVAVPDDYPPGTVLEEVTLVKDLELT-GNGSLGLVLDHPRNRLLVVAADVFGNKYSAVA 127 (332)
Q Consensus 55 ~g~~~~~~-~~-----~g~I~~vd~~~~~~~~~~~~~~~~~~~~~~~-~~~~~gi~vd~~~g~l~v~~~~~~~~~~~~l~ 127 (332)
++.+|+.+ .. ...++++|+.+.++ ..-+.+. ...-.++++-. |+||+..+.........+.
T Consensus 303 ~~~IYviGG~~~~~~~~~~v~~Yd~~~n~W----------~~~~~m~~~R~~~~~~~~~--g~IYviGG~~~~~~~~sve 370 (557)
T PHA02713 303 DNEIIIAGGYNFNNPSLNKVYKINIENKIH----------VELPPMIKNRCRFSLAVID--DTIYAIGGQNGTNVERTIE 370 (557)
T ss_pred CCEEEEEcCCCCCCCccceEEEEECCCCeE----------eeCCCCcchhhceeEEEEC--CEEEEECCcCCCCCCceEE
Confidence 45566654 21 13477888765543 2222222 12223455443 8999986532111234588
Q ss_pred EEECCCCcEEEEEecCCCCCCCCCccceEECCCCcEEEEeCC-----------------------CCeEEEEcCCCceEE
Q 020019 128 AYDLSTWNRLFLTQLSGPSDGKSCADDVTVDAEGNAYVTDVT-----------------------GSKIWKVGVKGEFLS 184 (332)
Q Consensus 128 ~~d~~~g~~~~~~~l~~~~~~~~~~ndiavd~dG~lyvtd~~-----------------------~~~I~~v~~~g~~~~ 184 (332)
.||+++++......++. .......+++ +|.||+.-.. ...+.++||....
T Consensus 371 ~Ydp~~~~W~~~~~mp~---~r~~~~~~~~--~g~IYviGG~~~~~~~~~~~~~~~~~~~~~~~~~~~ve~YDP~td~-- 443 (557)
T PHA02713 371 CYTMGDDKWKMLPDMPI---ALSSYGMCVL--DQYIYIIGGRTEHIDYTSVHHMNSIDMEEDTHSSNKVIRYDTVNNI-- 443 (557)
T ss_pred EEECCCCeEEECCCCCc---ccccccEEEE--CCEEEEEeCCCcccccccccccccccccccccccceEEEECCCCCe--
Confidence 99998866543333321 1122222333 5789985321 2458888886431
Q ss_pred EecCCCCCCcccccCccccCeEEEccCceEEEEeCCC------CeEEEEeCCC-CCCccceeEEE-EecCCCCCCCCeEE
Q 020019 185 IISSPLFTPKEWYKNLVGLNGIVYHPDGFLIVIHTFS------GNLFKIDIVD-GVGEGEEIKLI-RVAGGPLSFGDGLE 256 (332)
Q Consensus 185 ~~~~~~~~~p~~~~~~~~~nGi~~~~dG~Lyva~~~~------~~i~~id~~~-~~~~~~~~~~v-~~~g~~~~~pdGi~ 256 (332)
|-..+.+..+ ... .+++.- +|.|||.-..+ ..+.++|+.+ .+ =+.+ ..+ .+. .--|++
T Consensus 444 W~~v~~m~~~-----r~~-~~~~~~-~~~IYv~GG~~~~~~~~~~ve~Ydp~~~~~-----W~~~~~m~-~~r-~~~~~~ 509 (557)
T PHA02713 444 WETLPNFWTG-----TIR-PGVVSH-KDDIYVVCDIKDEKNVKTCIFRYNTNTYNG-----WELITTTE-SRL-SALHTI 509 (557)
T ss_pred EeecCCCCcc-----ccc-CcEEEE-CCEEEEEeCCCCCCccceeEEEecCCCCCC-----eeEccccC-ccc-ccceeE
Confidence 2111222111 112 244443 57899874321 3467888886 42 1111 111 111 123555
Q ss_pred EeCCCeEEEEeC
Q 020019 257 LLSPTKLVVAGN 268 (332)
Q Consensus 257 ~~~dG~l~va~~ 268 (332)
+- +|+||+.+.
T Consensus 510 ~~-~~~iyv~Gg 520 (557)
T PHA02713 510 LH-DNTIMMLHC 520 (557)
T ss_pred EE-CCEEEEEee
Confidence 54 689999974
|
|
| >PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins | Back alignment and domain information |
|---|
Probab=94.25 E-value=3.1 Score=35.51 Aligned_cols=99 Identities=15% Similarity=0.240 Sum_probs=59.4
Q ss_pred ccceEEEeCCCCeEEEEEeCcCCCccceEEEEECCCCcEEEEEecCCCCCCCCCccceEECCCCcEEEE-eC--CCCeEE
Q 020019 98 GSLGLVLDHPRNRLLVVAADVFGNKYSAVAAYDLSTWNRLFLTQLSGPSDGKSCADDVTVDAEGNAYVT-DV--TGSKIW 174 (332)
Q Consensus 98 ~~~gi~vd~~~g~l~v~~~~~~~~~~~~l~~~d~~~g~~~~~~~l~~~~~~~~~~ndiavd~dG~lyvt-d~--~~~~I~ 174 (332)
....++..|+..++.++.+.. ...+..||.+ ++.. ..+. ....|.+...|+|+..+. .. ..|.|.
T Consensus 61 ~I~~~~WsP~g~~favi~g~~----~~~v~lyd~~-~~~i--~~~~-----~~~~n~i~wsP~G~~l~~~g~~n~~G~l~ 128 (194)
T PF08662_consen 61 PIHDVAWSPNGNEFAVIYGSM----PAKVTLYDVK-GKKI--FSFG-----TQPRNTISWSPDGRFLVLAGFGNLNGDLE 128 (194)
T ss_pred ceEEEEECcCCCEEEEEEccC----CcccEEEcCc-ccEe--Eeec-----CCCceEEEECCCCCEEEEEEccCCCcEEE
Confidence 368899999744444554322 2367889986 3433 3331 245578999999986554 32 246788
Q ss_pred EEcCCCceEEEecCCCCCCcccccCccccCeEEEccCc-eEEEEeC
Q 020019 175 KVGVKGEFLSIISSPLFTPKEWYKNLVGLNGIVYHPDG-FLIVIHT 219 (332)
Q Consensus 175 ~v~~~g~~~~~~~~~~~~~p~~~~~~~~~nGi~~~~dG-~Lyva~~ 219 (332)
.+|.+... .+.. +. ......++|+||| ++..+.+
T Consensus 129 ~wd~~~~~-~i~~---~~-------~~~~t~~~WsPdGr~~~ta~t 163 (194)
T PF08662_consen 129 FWDVRKKK-KIST---FE-------HSDATDVEWSPDGRYLATATT 163 (194)
T ss_pred EEECCCCE-Eeec---cc-------cCcEEEEEEcCCCCEEEEEEe
Confidence 88876322 2111 11 1235789999999 5555443
|
|
| >KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=94.24 E-value=3.5 Score=36.18 Aligned_cols=171 Identities=13% Similarity=0.104 Sum_probs=94.3
Q ss_pred ecCCeEEEEECCCCCCCccceeeeEEecccCcCCCccceEEEeCCCCeEEEEEeCcCCCccceEEEEECCCCcEEEEEec
Q 020019 63 FLDGGIGQVAVPDDYPPGTVLEEVTLVKDLELTGNGSLGLVLDHPRNRLLVVAADVFGNKYSAVAAYDLSTWNRLFLTQL 142 (332)
Q Consensus 63 ~~~g~I~~vd~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~vd~~~g~l~v~~~~~~~~~~~~l~~~d~~~g~~~~~~~l 142 (332)
-.+..++.||..+++- .. .|-... ...+.++++.+ -.+.+. +.. ...+..||=++..++..-.+
T Consensus 78 GgDk~v~vwDV~TGkv----~R--r~rgH~----aqVNtV~fNee-sSVv~S-gsf----D~s~r~wDCRS~s~ePiQil 141 (307)
T KOG0316|consen 78 GGDKAVQVWDVNTGKV----DR--RFRGHL----AQVNTVRFNEE-SSVVAS-GSF----DSSVRLWDCRSRSFEPIQIL 141 (307)
T ss_pred CCCceEEEEEcccCee----ee--eccccc----ceeeEEEecCc-ceEEEe-ccc----cceeEEEEcccCCCCccchh
Confidence 3445688888877761 11 332211 25788999886 554443 221 35688899877654332112
Q ss_pred CCCCCCCCCccceEECCCCcEEEEeCCCCeEEEEcCC-CceEEEecCCCCCCcccccCccccCeEEEccCceEEEEeCCC
Q 020019 143 SGPSDGKSCADDVTVDAEGNAYVTDVTGSKIWKVGVK-GEFLSIISSPLFTPKEWYKNLVGLNGIVYHPDGFLIVIHTFS 221 (332)
Q Consensus 143 ~~~~~~~~~~ndiavd~dG~lyvtd~~~~~I~~v~~~-g~~~~~~~~~~~~~p~~~~~~~~~nGi~~~~dG~Lyva~~~~ 221 (332)
....+ .. +.+|=.+..+++-+..|.+.++|.. |+... .-+..| .|.+.+++||+--.+-..+
T Consensus 142 dea~D---~V--~Si~v~~heIvaGS~DGtvRtydiR~G~l~s----Dy~g~p--------it~vs~s~d~nc~La~~l~ 204 (307)
T KOG0316|consen 142 DEAKD---GV--SSIDVAEHEIVAGSVDGTVRTYDIRKGTLSS----DYFGHP--------ITSVSFSKDGNCSLASSLD 204 (307)
T ss_pred hhhcC---ce--eEEEecccEEEeeccCCcEEEEEeecceeeh----hhcCCc--------ceeEEecCCCCEEEEeecc
Confidence 11011 11 3444455677888888888888854 55331 122233 4899999999544455667
Q ss_pred CeEEEEeCCCCCCc----cceeEEEEecCCCCCCCCeEEEe--CCCeEEEEe
Q 020019 222 GNLFKIDIVDGVGE----GEEIKLIRVAGGPLSFGDGLELL--SPTKLVVAG 267 (332)
Q Consensus 222 ~~i~~id~~~~~~~----~~~~~~v~~~g~~~~~pdGi~~~--~dG~l~va~ 267 (332)
+.|.-+|-++|++- +-.-+++++. --+...+-..+. .||++|+-+
T Consensus 205 stlrLlDk~tGklL~sYkGhkn~eykld-c~l~qsdthV~sgSEDG~Vy~wd 255 (307)
T KOG0316|consen 205 STLRLLDKETGKLLKSYKGHKNMEYKLD-CCLNQSDTHVFSGSEDGKVYFWD 255 (307)
T ss_pred ceeeecccchhHHHHHhcccccceeeee-eeecccceeEEeccCCceEEEEE
Confidence 77888888877431 1011222222 112334445453 568888876
|
|
| >KOG1273 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=94.18 E-value=4.4 Score=37.05 Aligned_cols=188 Identities=12% Similarity=0.106 Sum_probs=111.4
Q ss_pred cccceEEcCCCCEEEEEecCCeEEEEECCCCCCCccceeeeEEecccCcCC-CccceEEEeCCCCeEEEEEeCcCCCccc
Q 020019 46 FRECAKWDDSGRRFIVSFLDGGIGQVAVPDDYPPGTVLEEVTLVKDLELTG-NGSLGLVLDHPRNRLLVVAADVFGNKYS 124 (332)
Q Consensus 46 ~pegia~d~~g~~~~~~~~~g~I~~vd~~~~~~~~~~~~~~~~~~~~~~~~-~~~~gi~vd~~~g~l~v~~~~~~~~~~~ 124 (332)
..+.+.+++-|..+-+...+|+|..+|-.+... . .+++ .+ .....++..++ |+..++.. +..
T Consensus 25 ~a~~~~Fs~~G~~lAvGc~nG~vvI~D~~T~~i-----a--r~ls----aH~~pi~sl~WS~d-gr~LltsS-----~D~ 87 (405)
T KOG1273|consen 25 LAECCQFSRWGDYLAVGCANGRVVIYDFDTFRI-----A--RMLS----AHVRPITSLCWSRD-GRKLLTSS-----RDW 87 (405)
T ss_pred ccceEEeccCcceeeeeccCCcEEEEEccccch-----h--hhhh----ccccceeEEEecCC-CCEeeeec-----CCc
Confidence 468899999998777778899999998775431 1 1221 11 13468899997 87666654 346
Q ss_pred eEEEEECCCCcEEEEEecCCCCCCCCCccceEECCC-CcEEEEeC--CCCeEEEEcCCCceEEEecCCCCCCcccccCcc
Q 020019 125 AVAAYDLSTWNRLFLTQLSGPSDGKSCADDVTVDAE-GNAYVTDV--TGSKIWKVGVKGEFLSIISSPLFTPKEWYKNLV 201 (332)
Q Consensus 125 ~l~~~d~~~g~~~~~~~l~~~~~~~~~~ndiavd~d-G~lyvtd~--~~~~I~~v~~~g~~~~~~~~~~~~~p~~~~~~~ 201 (332)
.+..||+..|.....+.++.|.- +..+.|. -|..++.- ....+..++. ++...+..+.... ...
T Consensus 88 si~lwDl~~gs~l~rirf~spv~------~~q~hp~k~n~~va~~~~~sp~vi~~s~-~~h~~Lp~d~d~d------ln~ 154 (405)
T KOG1273|consen 88 SIKLWDLLKGSPLKRIRFDSPVW------GAQWHPRKRNKCVATIMEESPVVIDFSD-PKHSVLPKDDDGD------LNS 154 (405)
T ss_pred eeEEEeccCCCceeEEEccCccc------eeeeccccCCeEEEEEecCCcEEEEecC-CceeeccCCCccc------ccc
Confidence 78899999999888888866532 2445554 35544432 2345555554 3433322221110 001
Q ss_pred ccCeEEEccCceEEEEeCCCCeEEEEeCCCCCCccceeEEEEecCCCCCCCCeEEEeCCCeEEEEeCC
Q 020019 202 GLNGIVYHPDGFLIVIHTFSGNLFKIDIVDGVGEGEEIKLIRVAGGPLSFGDGLELLSPTKLVVAGNP 269 (332)
Q Consensus 202 ~~nGi~~~~dG~Lyva~~~~~~i~~id~~~~~~~~~~~~~v~~~g~~~~~pdGi~~~~dG~l~va~~~ 269 (332)
.+.-..+++.|..+++-+..|++..++..+-+ -+..+... .....--|.+...|+.++.|-.
T Consensus 155 sas~~~fdr~g~yIitGtsKGkllv~~a~t~e----~vas~rit--s~~~IK~I~~s~~g~~liiNts 216 (405)
T KOG1273|consen 155 SASHGVFDRRGKYIITGTSKGKLLVYDAETLE----CVASFRIT--SVQAIKQIIVSRKGRFLIINTS 216 (405)
T ss_pred ccccccccCCCCEEEEecCcceEEEEecchhe----eeeeeeec--hheeeeEEEEeccCcEEEEecC
Confidence 12223789999444455678889888887642 22222221 1122345778888887777643
|
|
| >KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=94.17 E-value=4 Score=36.46 Aligned_cols=146 Identities=11% Similarity=0.054 Sum_probs=82.9
Q ss_pred eEEcCCCCEEE-EEecCCeEEEEECCCCCCCccceeeeEEecccCcCCC-ccceEEEeCCCCeEEEEEeCcCCCccceEE
Q 020019 50 AKWDDSGRRFI-VSFLDGGIGQVAVPDDYPPGTVLEEVTLVKDLELTGN-GSLGLVLDHPRNRLLVVAADVFGNKYSAVA 127 (332)
Q Consensus 50 ia~d~~g~~~~-~~~~~g~I~~vd~~~~~~~~~~~~~~~~~~~~~~~~~-~~~gi~vd~~~g~l~v~~~~~~~~~~~~l~ 127 (332)
+.+-++-..++ .....+++..+|+.++.. .|.. -..++ ....|.+. +.+.+... .+.|+
T Consensus 16 LVV~~dskT~v~igSHs~~~~avd~~sG~~--------~We~--ilg~RiE~sa~vvg---dfVV~GCy------~g~lY 76 (354)
T KOG4649|consen 16 LVVCNDSKTLVVIGSHSGIVIAVDPQSGNL--------IWEA--ILGVRIECSAIVVG---DFVVLGCY------SGGLY 76 (354)
T ss_pred EEEecCCceEEEEecCCceEEEecCCCCcE--------Eeeh--hhCceeeeeeEEEC---CEEEEEEc------cCcEE
Confidence 44555545443 446678899999998872 3432 11111 12234443 33333332 35788
Q ss_pred EEECCCCcEEEEEecCCCCCCCCCccceEECCCCcEEEEeCCCCeEEEEcCCCceEEEe---cCCCCCCcccccCccccC
Q 020019 128 AYDLSTWNRLFLTQLSGPSDGKSCADDVTVDAEGNAYVTDVTGSKIWKVGVKGEFLSII---SSPLFTPKEWYKNLVGLN 204 (332)
Q Consensus 128 ~~d~~~g~~~~~~~l~~~~~~~~~~ndiavd~dG~lyvtd~~~~~I~~v~~~g~~~~~~---~~~~~~~p~~~~~~~~~n 204 (332)
.++.++|...+.+...+.. --.-.+|+++.+...-+.++..|.+|+..+--.+- ....|..|
T Consensus 77 fl~~~tGs~~w~f~~~~~v-----k~~a~~d~~~glIycgshd~~~yalD~~~~~cVykskcgG~~f~sP---------- 141 (354)
T KOG4649|consen 77 FLCVKTGSQIWNFVILETV-----KVRAQCDFDGGLIYCGSHDGNFYALDPKTYGCVYKSKCGGGTFVSP---------- 141 (354)
T ss_pred EEEecchhheeeeeehhhh-----ccceEEcCCCceEEEecCCCcEEEecccccceEEecccCCceeccc----------
Confidence 8899999665554432111 11245678866544456778888888875533332 11122222
Q ss_pred eEEEcc-CceEEEEeCCCCeEEEEeCCCC
Q 020019 205 GIVYHP-DGFLIVIHTFSGNLFKIDIVDG 232 (332)
Q Consensus 205 Gi~~~~-dG~Lyva~~~~~~i~~id~~~~ 232 (332)
++++ ++.||++-+ .|++.++...+.
T Consensus 142 --~i~~g~~sly~a~t-~G~vlavt~~~~ 167 (354)
T KOG4649|consen 142 --VIAPGDGSLYAAIT-AGAVLAVTKNPY 167 (354)
T ss_pred --eecCCCceEEEEec-cceEEEEccCCC
Confidence 5666 679999865 667888887754
|
|
| >PF02191 OLF: Olfactomedin-like domain; InterPro: IPR003112 The olfactomedin-domain was first identified in olfactomedin, an extracellular matrix protein of the olfactory neuroepithelium [] | Back alignment and domain information |
|---|
Probab=94.09 E-value=4.1 Score=36.36 Aligned_cols=149 Identities=19% Similarity=0.217 Sum_probs=87.7
Q ss_pred eEEEeCCCCeEEEEEeCcCCCccceEEEEECCCCcEEEEEecCCCCCC--------CCCccceEECCCCcEEE---EeCC
Q 020019 101 GLVLDHPRNRLLVVAADVFGNKYSAVAAYDLSTWNRLFLTQLSGPSDG--------KSCADDVTVDAEGNAYV---TDVT 169 (332)
Q Consensus 101 gi~vd~~~g~l~v~~~~~~~~~~~~l~~~d~~~g~~~~~~~l~~~~~~--------~~~~ndiavd~dG~lyv---td~~ 169 (332)
|..+- +|.||.-.. ....|.+||++++.+.....|++..-. ...-=|+|+|.+| ||| +...
T Consensus 73 G~vVY--ngslYY~~~-----~s~~IvkydL~t~~v~~~~~L~~A~~~n~~~y~~~~~t~iD~AvDE~G-LWvIYat~~~ 144 (250)
T PF02191_consen 73 GHVVY--NGSLYYNKY-----NSRNIVKYDLTTRSVVARRELPGAGYNNRFPYYWSGYTDIDFAVDENG-LWVIYATEDN 144 (250)
T ss_pred CeEEE--CCcEEEEec-----CCceEEEEECcCCcEEEEEECCccccccccceecCCCceEEEEEcCCC-EEEEEecCCC
Confidence 44443 267777654 246799999999887755666432110 1122479999888 554 4444
Q ss_pred CC--eEEEEcCCC-ceEEEecCCCCCCcccccCccccCeEEEccCceEEEEeCCC---CeE-EEEeCCCCCCccceeEEE
Q 020019 170 GS--KIWKVGVKG-EFLSIISSPLFTPKEWYKNLVGLNGIVYHPDGFLIVIHTFS---GNL-FKIDIVDGVGEGEEIKLI 242 (332)
Q Consensus 170 ~~--~I~~v~~~g-~~~~~~~~~~~~~p~~~~~~~~~nGi~~~~dG~Lyva~~~~---~~i-~~id~~~~~~~~~~~~~v 242 (332)
.+ .|-|+|++. +....++.. +..+ ..-|...+. |.||+.+..+ .+| +.+|+.+++. ....+
T Consensus 145 ~g~ivvskld~~tL~v~~tw~T~-~~k~------~~~naFmvC--GvLY~~~s~~~~~~~I~yafDt~t~~~---~~~~i 212 (250)
T PF02191_consen 145 NGNIVVSKLDPETLSVEQTWNTS-YPKR------SAGNAFMVC--GVLYATDSYDTRDTEIFYAFDTYTGKE---EDVSI 212 (250)
T ss_pred CCcEEEEeeCcccCceEEEEEec-cCch------hhcceeeEe--eEEEEEEECCCCCcEEEEEEECCCCce---eceee
Confidence 44 466788863 333334322 2111 123444444 8999999875 556 7888887632 22223
Q ss_pred EecCCCCCCCCeEEEeC-CCeEEEEeCCc
Q 020019 243 RVAGGPLSFGDGLELLS-PTKLVVAGNPS 270 (332)
Q Consensus 243 ~~~g~~~~~pdGi~~~~-dG~l~va~~~~ 270 (332)
.+. .......-|..+| |.+||+-+++.
T Consensus 213 ~f~-~~~~~~~~l~YNP~dk~LY~wd~G~ 240 (250)
T PF02191_consen 213 PFP-NPYGNISMLSYNPRDKKLYAWDNGY 240 (250)
T ss_pred eec-cccCceEeeeECCCCCeEEEEECCe
Confidence 443 2334555667776 58899999875
|
Members of this extracellular domain-family have since been shown to be present in several metazoan proteins, such as latrophilins, myocilins, optimedins and noelins, the latter being involved in the generation of neural crest cells. Myocilin is of considerable interest, as mutations in its olfactomedin-domain can lead to glaucoma []. The olfactomedin-domains in myocilin and optimedin are essential for the interaction between these two proteins [].; GO: 0005515 protein binding |
| >KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=93.89 E-value=2.1 Score=39.07 Aligned_cols=153 Identities=15% Similarity=0.144 Sum_probs=91.3
Q ss_pred CccccceEEcCCCCEEEEEecCCeEEEEECCCCCCCccceeeeEEecccCcCCCccceEEEeCCCCeEEEEEeCcCCCcc
Q 020019 44 SFFRECAKWDDSGRRFIVSFLDGGIGQVAVPDDYPPGTVLEEVTLVKDLELTGNGSLGLVLDHPRNRLLVVAADVFGNKY 123 (332)
Q Consensus 44 ~~~pegia~d~~g~~~~~~~~~g~I~~vd~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~vd~~~g~l~v~~~~~~~~~~ 123 (332)
..+.....+.++|+..++...+|+|-.|+..++++. . ++- .++ ..-..+.+.+-|.+-..+|+.+ +.
T Consensus 348 sSyvn~a~ft~dG~~iisaSsDgtvkvW~~KtteC~----~--Tfk-~~~-~d~~vnsv~~~PKnpeh~iVCN-----rs 414 (508)
T KOG0275|consen 348 SSYVNEATFTDDGHHIISASSDGTVKVWHGKTTECL----S--TFK-PLG-TDYPVNSVILLPKNPEHFIVCN-----RS 414 (508)
T ss_pred cccccceEEcCCCCeEEEecCCccEEEecCcchhhh----h--hcc-CCC-CcccceeEEEcCCCCceEEEEc-----CC
Confidence 347777899999998888888999999987766641 2 232 111 1124566666665544455444 35
Q ss_pred ceEEEEECCCCcEEEEEecCCCCCCCCCccceEECCCCcEEEEeCCCCeEEEEcCC-CceEEEecCCCCCCcccccCccc
Q 020019 124 SAVAAYDLSTWNRLFLTQLSGPSDGKSCADDVTVDAEGNAYVTDVTGSKIWKVGVK-GEFLSIISSPLFTPKEWYKNLVG 202 (332)
Q Consensus 124 ~~l~~~d~~~g~~~~~~~l~~~~~~~~~~ndiavd~dG~lyvtd~~~~~I~~v~~~-g~~~~~~~~~~~~~p~~~~~~~~ 202 (332)
+.+++.+.. |++++.+.- +...+..|. ..++.|.|....+-...+.+|.|..- |+..+.+... -.-
T Consensus 415 ntv~imn~q-GQvVrsfsS-GkREgGdFi-~~~lSpkGewiYcigED~vlYCF~~~sG~LE~tl~Vh----------Ekd 481 (508)
T KOG0275|consen 415 NTVYIMNMQ-GQVVRSFSS-GKREGGDFI-NAILSPKGEWIYCIGEDGVLYCFSVLSGKLERTLPVH----------EKD 481 (508)
T ss_pred CeEEEEecc-ceEEeeecc-CCccCCceE-EEEecCCCcEEEEEccCcEEEEEEeecCceeeeeecc----------ccc
Confidence 668888875 566544332 111122333 35678888754444556888888753 6665543211 112
Q ss_pred cCeEEEccCceEEEEeCCCC
Q 020019 203 LNGIVYHPDGFLIVIHTFSG 222 (332)
Q Consensus 203 ~nGi~~~~dG~Lyva~~~~~ 222 (332)
+-||+-+|..+|..+-...+
T Consensus 482 vIGl~HHPHqNllAsYsEDg 501 (508)
T KOG0275|consen 482 VIGLTHHPHQNLLASYSEDG 501 (508)
T ss_pred ccccccCcccchhhhhcccc
Confidence 45888888877766554444
|
|
| >KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=93.85 E-value=0.92 Score=43.67 Aligned_cols=112 Identities=13% Similarity=0.157 Sum_probs=72.4
Q ss_pred eEEcCCCCEEEEE-ecCCeEEEEECCCCCCCccceeeeEEecccCcCCC-ccceEEEeCCCCeEEEEEeCcCCCccceEE
Q 020019 50 AKWDDSGRRFIVS-FLDGGIGQVAVPDDYPPGTVLEEVTLVKDLELTGN-GSLGLVLDHPRNRLLVVAADVFGNKYSAVA 127 (332)
Q Consensus 50 ia~d~~g~~~~~~-~~~g~I~~vd~~~~~~~~~~~~~~~~~~~~~~~~~-~~~gi~vd~~~g~l~v~~~~~~~~~~~~l~ 127 (332)
+.+++.-+.+++. ..+|.|..||.. +..+ .. .|.. .+. ...||.+.|.+-.|+|..+- ..+|.
T Consensus 170 l~ys~skr~lL~~asd~G~VtlwDv~-g~sp---~~--~~~~----~HsAP~~gicfspsne~l~vsVG~-----Dkki~ 234 (673)
T KOG4378|consen 170 LRYSPSKRFLLSIASDKGAVTLWDVQ-GMSP---IF--HASE----AHSAPCRGICFSPSNEALLVSVGY-----DKKIN 234 (673)
T ss_pred eecccccceeeEeeccCCeEEEEecc-CCCc---cc--chhh----hccCCcCcceecCCccceEEEecc-----cceEE
Confidence 5566666655555 567888888865 3321 11 1211 112 24799999985556665542 46899
Q ss_pred EEECCCCcEEEEEecCCCCCCCCCccceEECCCCcEEEEeCCCCeEEEEcCCCce
Q 020019 128 AYDLSTWNRLFLTQLSGPSDGKSCADDVTVDAEGNAYVTDVTGSKIWKVGVKGEF 182 (332)
Q Consensus 128 ~~d~~~g~~~~~~~l~~~~~~~~~~ndiavd~dG~lyvtd~~~~~I~~v~~~g~~ 182 (332)
.||..+.+....+....| ..-+++.++|.+.+.-...|.|+.+|..++.
T Consensus 235 ~yD~~s~~s~~~l~y~~P------lstvaf~~~G~~L~aG~s~G~~i~YD~R~~k 283 (673)
T KOG4378|consen 235 IYDIRSQASTDRLTYSHP------LSTVAFSECGTYLCAGNSKGELIAYDMRSTK 283 (673)
T ss_pred EeecccccccceeeecCC------cceeeecCCceEEEeecCCceEEEEecccCC
Confidence 999986655443333222 2359999999888888889999999988653
|
|
| >KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=93.68 E-value=4.6 Score=35.50 Aligned_cols=190 Identities=16% Similarity=0.162 Sum_probs=113.5
Q ss_pred cceEEcCCCCEEEEEecCCeEEEEECCCCCCCccceeeeEEecccCcCCCccceEEEeCCCCeEEEEEeCcCCCccceEE
Q 020019 48 ECAKWDDSGRRFIVSFLDGGIGQVAVPDDYPPGTVLEEVTLVKDLELTGNGSLGLVLDHPRNRLLVVAADVFGNKYSAVA 127 (332)
Q Consensus 48 egia~d~~g~~~~~~~~~g~I~~vd~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~vd~~~g~l~v~~~~~~~~~~~~l~ 127 (332)
.-+-+..+|+.-++.-.+..|--|.|..+.. +. ++. + -|......+...+ +.-+.+.+ +...+.
T Consensus 21 ~avryN~dGnY~ltcGsdrtvrLWNp~rg~l----ik--tYs---g-hG~EVlD~~~s~D-nskf~s~G-----gDk~v~ 84 (307)
T KOG0316|consen 21 RAVRYNVDGNYCLTCGSDRTVRLWNPLRGAL----IK--TYS---G-HGHEVLDAALSSD-NSKFASCG-----GDKAVQ 84 (307)
T ss_pred EEEEEccCCCEEEEcCCCceEEeecccccce----ee--eec---C-CCceeeecccccc-ccccccCC-----CCceEE
Confidence 3466778888555555567788888776652 11 221 1 1223455555554 33233332 245689
Q ss_pred EEECCCCcEEEEEecCCCCCCCCCccceEECCCCcEEEEeCCCCeEEEEcCCC---ceEEEecCCCCCCcccccCccccC
Q 020019 128 AYDLSTWNRLFLTQLSGPSDGKSCADDVTVDAEGNAYVTDVTGSKIWKVGVKG---EFLSIISSPLFTPKEWYKNLVGLN 204 (332)
Q Consensus 128 ~~d~~~g~~~~~~~l~~~~~~~~~~ndiavd~dG~lyvtd~~~~~I~~v~~~g---~~~~~~~~~~~~~p~~~~~~~~~n 204 (332)
+||.++|++.+.+.- . ..-.|-+.+..+-.+.++-+....+..+|=.. ++.+.++.. ..+..
T Consensus 85 vwDV~TGkv~Rr~rg--H---~aqVNtV~fNeesSVv~SgsfD~s~r~wDCRS~s~ePiQildea----------~D~V~ 149 (307)
T KOG0316|consen 85 VWDVNTGKVDRRFRG--H---LAQVNTVRFNEESSVVASGSFDSSVRLWDCRSRSFEPIQILDEA----------KDGVS 149 (307)
T ss_pred EEEcccCeeeeeccc--c---cceeeEEEecCcceEEEeccccceeEEEEcccCCCCccchhhhh----------cCcee
Confidence 999999999876542 1 35678899998888999887777776666331 233333221 12233
Q ss_pred eEEEccCceEEEEeCCCCeEEEEeCCCCCCccceeEEEEecCCCCCCCCeEEEeCCCeEEEEe--CCceEEEEcCCC
Q 020019 205 GIVYHPDGFLIVIHTFSGNLFKIDIVDGVGEGEEIKLIRVAGGPLSFGDGLELLSPTKLVVAG--NPSARLVESSDG 279 (332)
Q Consensus 205 Gi~~~~dG~Lyva~~~~~~i~~id~~~~~~~~~~~~~v~~~g~~~~~pdGi~~~~dG~l~va~--~~~~~~v~~~dg 279 (332)
.|.+ .++.+++-+..|++.++|...|+ ...-.+ |.+ ...+.+.+||+...+. +...+++....|
T Consensus 150 Si~v--~~heIvaGS~DGtvRtydiR~G~-----l~sDy~-g~p---it~vs~s~d~nc~La~~l~stlrLlDk~tG 215 (307)
T KOG0316|consen 150 SIDV--AEHEIVAGSVDGTVRTYDIRKGT-----LSSDYF-GHP---ITSVSFSKDGNCSLASSLDSTLRLLDKETG 215 (307)
T ss_pred EEEe--cccEEEeeccCCcEEEEEeecce-----eehhhc-CCc---ceeEEecCCCCEEEEeeccceeeecccchh
Confidence 4444 36788888889999999998773 211111 122 3568888998866665 333454444444
|
|
| >KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=93.56 E-value=5.6 Score=36.10 Aligned_cols=184 Identities=14% Similarity=0.092 Sum_probs=108.8
Q ss_pred cccceEEcCCCCEEEEEecCCeEEEEECCCCCCCccceeeeEEecccCcCCCccceEEEeCCCCeEEEEEeCcCCCccce
Q 020019 46 FRECAKWDDSGRRFIVSFLDGGIGQVAVPDDYPPGTVLEEVTLVKDLELTGNGSLGLVLDHPRNRLLVVAADVFGNKYSA 125 (332)
Q Consensus 46 ~pegia~d~~g~~~~~~~~~g~I~~vd~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~vd~~~g~l~v~~~~~~~~~~~~ 125 (332)
...-+.|+|+|..|.++-.+..|+-|...+.. +. .+. +..--....++...++ +...++... ...
T Consensus 49 eI~~~~F~P~gs~~aSgG~Dr~I~LWnv~gdc------eN-~~~--lkgHsgAVM~l~~~~d-~s~i~S~gt-----Dk~ 113 (338)
T KOG0265|consen 49 EIYTIKFHPDGSCFASGGSDRAIVLWNVYGDC------EN-FWV--LKGHSGAVMELHGMRD-GSHILSCGT-----DKT 113 (338)
T ss_pred eEEEEEECCCCCeEeecCCcceEEEEeccccc------cc-eee--eccccceeEeeeeccC-CCEEEEecC-----Cce
Confidence 33457899999988777667888877754322 21 221 1110025678888887 555555542 356
Q ss_pred EEEEECCCCcEEEEEecCCCCCCCCCccceEECCCCc-EEEEeCCCCeEEEEcCCCceEEEecCCCCCCcccccCccccC
Q 020019 126 VAAYDLSTWNRLFLTQLSGPSDGKSCADDVTVDAEGN-AYVTDVTGSKIWKVGVKGEFLSIISSPLFTPKEWYKNLVGLN 204 (332)
Q Consensus 126 l~~~d~~~g~~~~~~~l~~~~~~~~~~ndiavd~dG~-lyvtd~~~~~I~~v~~~g~~~~~~~~~~~~~p~~~~~~~~~n 204 (332)
++.||.++|+....... ...+.|-+.....|- +..+-+..+.+-.+|...|... .+++ ......
T Consensus 114 v~~wD~~tG~~~rk~k~-----h~~~vNs~~p~rrg~~lv~SgsdD~t~kl~D~R~k~~~----~t~~------~kyqlt 178 (338)
T KOG0265|consen 114 VRGWDAETGKRIRKHKG-----HTSFVNSLDPSRRGPQLVCSGSDDGTLKLWDIRKKEAI----KTFE------NKYQLT 178 (338)
T ss_pred EEEEecccceeeehhcc-----ccceeeecCccccCCeEEEecCCCceEEEEeecccchh----hccc------cceeEE
Confidence 89999999988765443 135677776555563 5556666666666665433111 0111 123456
Q ss_pred eEEEccCc-eEEEEeCCCCeEEEEeCCCCCCccceeEEEEecCCCCCCCCeEEEeCCCeEEEEe
Q 020019 205 GIVYHPDG-FLIVIHTFSGNLFKIDIVDGVGEGEEIKLIRVAGGPLSFGDGLELLSPTKLVVAG 267 (332)
Q Consensus 205 Gi~~~~dG-~Lyva~~~~~~i~~id~~~~~~~~~~~~~v~~~g~~~~~pdGi~~~~dG~l~va~ 267 (332)
.++|..++ .++.+ .-++.|-.+|+.... ... -+.| .-....||.+.++|....++
T Consensus 179 Av~f~d~s~qv~sg-gIdn~ikvWd~r~~d----~~~--~lsG-h~DtIt~lsls~~gs~llsn 234 (338)
T KOG0265|consen 179 AVGFKDTSDQVISG-GIDNDIKVWDLRKND----GLY--TLSG-HADTITGLSLSRYGSFLLSN 234 (338)
T ss_pred EEEecccccceeec-cccCceeeeccccCc----ceE--Eeec-ccCceeeEEeccCCCccccc
Confidence 78888777 66554 345567677776431 122 2232 23455688888888877776
|
|
| >PF14517 Tachylectin: Tachylectin; PDB: 1TL2_A | Back alignment and domain information |
|---|
Probab=93.55 E-value=0.32 Score=42.49 Aligned_cols=163 Identities=15% Similarity=0.135 Sum_probs=74.9
Q ss_pred ccceEEcCCCCEEEEEecCCeEEEEECC-CCCCCccceeeeEEecccCc--CC--CccceEEEeCCCCeEEEEEeCcCCC
Q 020019 47 RECAKWDDSGRRFIVSFLDGGIGQVAVP-DDYPPGTVLEEVTLVKDLEL--TG--NGSLGLVLDHPRNRLLVVAADVFGN 121 (332)
Q Consensus 47 pegia~d~~g~~~~~~~~~g~I~~vd~~-~~~~~~~~~~~~~~~~~~~~--~~--~~~~gi~vd~~~g~l~v~~~~~~~~ 121 (332)
-.-|+..|+|++|.+. .+.+++..+. ... + ++...+.. .+ +.-..|.+|+. |.||.+..+
T Consensus 36 ~~~i~~~P~g~lY~I~--~~~lY~~~~~~~~~------~--~~~~~~~~Ig~g~W~~F~~i~~d~~-G~LYaV~~~---- 100 (229)
T PF14517_consen 36 FRDIAAGPNGRLYAIR--NDGLYRGSPSSSGG------N--TWDSGSKQIGDGGWNSFKFIFFDPT-GVLYAVTPD---- 100 (229)
T ss_dssp -SEEEE-TTS-EEEEE--TTEEEEES---STT----------HHHH-EEEE-S-GGG-SEEEE-TT-S-EEEEETT----
T ss_pred cceEEEcCCceEEEEE--CCceEEecCCccCc------c--cccccCcccccCcccceeEEEecCC-ccEEEeccc----
Confidence 3558899999988766 4588888322 111 1 12211100 01 13457999995 999998753
Q ss_pred ccceEEEEECC-CCcEEEEEecCC-CC-CCCCCccceEECCCCcEEEEeCCCCeEEEE-cCCCceEEEecCCCCCCcccc
Q 020019 122 KYSAVAAYDLS-TWNRLFLTQLSG-PS-DGKSCADDVTVDAEGNAYVTDVTGSKIWKV-GVKGEFLSIISSPLFTPKEWY 197 (332)
Q Consensus 122 ~~~~l~~~d~~-~g~~~~~~~l~~-~~-~~~~~~ndiavd~dG~lyvtd~~~~~I~~v-~~~g~~~~~~~~~~~~~p~~~ 197 (332)
+.|+++... ++...+...... .+ .+-....-+-.+++|.||.-+. .+++++. .+++....++....... .
T Consensus 101 --G~lyR~~~~~~~~~~W~~~~~~~iG~~GW~~f~~vfa~~~GvLY~i~~-dg~~~~~~~p~~~~~~W~~~s~~v~---~ 174 (229)
T PF14517_consen 101 --GKLYRHPRPTNGSDNWIGGSGKKIGGTGWNDFDAVFAGPNGVLYAITP-DGRLYRRYRPDGGSDRWLSGSGLVG---G 174 (229)
T ss_dssp ---EEEEES---STT--HHH-HSEEEE-SSGGGEEEEEE-TTS-EEEEET-TE-EEEE---SSTT--HHHH-EEEE---S
T ss_pred --cceeeccCCCccCcchhhccceecccCCCccceEEEeCCCccEEEEcC-CCceEEeCCCCCCCCccccccceec---c
Confidence 467665542 222221110000 00 1123456688899999998874 4477776 55543333322111100 0
Q ss_pred cCccccCeEEEccCceEEEEeCCCCeEEEEeCCC
Q 020019 198 KNLVGLNGIVYHPDGFLIVIHTFSGNLFKIDIVD 231 (332)
Q Consensus 198 ~~~~~~nGi~~~~dG~Lyva~~~~~~i~~id~~~ 231 (332)
.......-|.+.++|.||.. -.++.|||-.+.+
T Consensus 175 ~gw~~~~~i~~~~~g~L~~V-~~~G~lyr~~~p~ 207 (229)
T PF14517_consen 175 GGWDSFHFIFFSPDGNLWAV-KSNGKLYRGRPPQ 207 (229)
T ss_dssp SSGGGEEEEEE-TTS-EEEE--ETTEEEEES---
T ss_pred CCcccceEEeeCCCCcEEEE-ecCCEEeccCCcc
Confidence 01122567899999999988 4578899887664
|
|
| >KOG1407 consensus WD40 repeat protein [Function unknown] | Back alignment and domain information |
|---|
Probab=93.53 E-value=5.2 Score=35.66 Aligned_cols=173 Identities=12% Similarity=0.103 Sum_probs=93.4
Q ss_pred ceEEcCCCCEEEEEecCCeEEEEECCCCCCCccceeeeEEecccCcCCCccceEEEeCCCCeEEEEEeCcCCCccceEEE
Q 020019 49 CAKWDDSGRRFIVSFLDGGIGQVAVPDDYPPGTVLEEVTLVKDLELTGNGSLGLVLDHPRNRLLVVAADVFGNKYSAVAA 128 (332)
Q Consensus 49 gia~d~~g~~~~~~~~~g~I~~vd~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~vd~~~g~l~v~~~~~~~~~~~~l~~ 128 (332)
.++|.|+|..+.+.-.+..|.-+|..+.+. ....+.. --.+-+...-+ +.+|+..++ .+++-+
T Consensus 111 ~i~wsp~g~~~~~~~kdD~it~id~r~~~~---------~~~~~~~--~e~ne~~w~~~-nd~Fflt~G-----lG~v~I 173 (313)
T KOG1407|consen 111 NITWSPDGEYIAVGNKDDRITFIDARTYKI---------VNEEQFK--FEVNEISWNNS-NDLFFLTNG-----LGCVEI 173 (313)
T ss_pred EEEEcCCCCEEEEecCcccEEEEEecccce---------eehhccc--ceeeeeeecCC-CCEEEEecC-----CceEEE
Confidence 467888887665555567777777553331 1111100 12455666654 778888764 445555
Q ss_pred EECCCCcEEEEEecCCCCCCCCCccceEECCCCcEEEEeCCCCeEEEEcCCCce-EEEecCCCCCCcccccCccccCeEE
Q 020019 129 YDLSTWNRLFLTQLSGPSDGKSCADDVTVDAEGNAYVTDVTGSKIWKVGVKGEF-LSIISSPLFTPKEWYKNLVGLNGIV 207 (332)
Q Consensus 129 ~d~~~g~~~~~~~l~~~~~~~~~~ndiavd~dG~lyvtd~~~~~I~~v~~~g~~-~~~~~~~~~~~p~~~~~~~~~nGi~ 207 (332)
+.-..-+++..+.- . .+.+-.|.+||+|+-+.+-+....+.-.|.+.-. .+.+ +.+..| ..-|.
T Consensus 174 LsypsLkpv~si~A--H---~snCicI~f~p~GryfA~GsADAlvSLWD~~ELiC~R~i--sRldwp--------VRTlS 238 (313)
T KOG1407|consen 174 LSYPSLKPVQSIKA--H---PSNCICIEFDPDGRYFATGSADALVSLWDVDELICERCI--SRLDWP--------VRTLS 238 (313)
T ss_pred Eecccccccccccc--C---CcceEEEEECCCCceEeeccccceeeccChhHhhhheee--ccccCc--------eEEEE
Confidence 54443344332221 1 2456678899999877777666666666766321 1111 122222 24678
Q ss_pred EccCceEEEEeCCCCeEEEEeCCCCCCccceeEEEEecCCCCCCCCeEEEeCCC
Q 020019 208 YHPDGFLIVIHTFSGNLFKIDIVDGVGEGEEIKLIRVAGGPLSFGDGLELLSPT 261 (332)
Q Consensus 208 ~~~dG~Lyva~~~~~~i~~id~~~~~~~~~~~~~v~~~g~~~~~pdGi~~~~dG 261 (332)
|+-||++..+-+...-|---+.++| ..+..|+..+ + ..-++..|.-
T Consensus 239 FS~dg~~lASaSEDh~IDIA~vetG----d~~~eI~~~~-~---t~tVAWHPk~ 284 (313)
T KOG1407|consen 239 FSHDGRMLASASEDHFIDIAEVETG----DRVWEIPCEG-P---TFTVAWHPKR 284 (313)
T ss_pred eccCcceeeccCccceEEeEecccC----CeEEEeeccC-C---ceeEEecCCC
Confidence 8888866666555554433344454 2455555432 1 2346666653
|
|
| >COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=93.42 E-value=1.3 Score=42.84 Aligned_cols=119 Identities=13% Similarity=0.203 Sum_probs=64.3
Q ss_pred eEEEEECCCCcEEEEEecCCCCCCCCCccceEECCCCc-EEEEeCC--CCeEEEEcCCCceEEEecCCCCCCcccccCcc
Q 020019 125 AVAAYDLSTWNRLFLTQLSGPSDGKSCADDVTVDAEGN-AYVTDVT--GSKIWKVGVKGEFLSIISSPLFTPKEWYKNLV 201 (332)
Q Consensus 125 ~l~~~d~~~g~~~~~~~l~~~~~~~~~~ndiavd~dG~-lyvtd~~--~~~I~~v~~~g~~~~~~~~~~~~~p~~~~~~~ 201 (332)
.++.+|+++++........ ..-...++.|||+ |.++... ...||.+|.+++....+.+...
T Consensus 219 ~i~~~~l~~g~~~~i~~~~------g~~~~P~fspDG~~l~f~~~rdg~~~iy~~dl~~~~~~~Lt~~~g---------- 282 (425)
T COG0823 219 RIYYLDLNTGKRPVILNFN------GNNGAPAFSPDGSKLAFSSSRDGSPDIYLMDLDGKNLPRLTNGFG---------- 282 (425)
T ss_pred eEEEEeccCCccceeeccC------CccCCccCCCCCCEEEEEECCCCCccEEEEcCCCCcceecccCCc----------
Confidence 3555566655544333332 2223467788885 5555443 4579999988775443332111
Q ss_pred ccCeEEEccCc-eEEEEeCCCC--eEEEEeCCCCCCccceeEEEEecCCCCCCCCeEEEeCCCeEEEEe
Q 020019 202 GLNGIVYHPDG-FLIVIHTFSG--NLFKIDIVDGVGEGEEIKLIRVAGGPLSFGDGLELLSPTKLVVAG 267 (332)
Q Consensus 202 ~~nGi~~~~dG-~Lyva~~~~~--~i~~id~~~~~~~~~~~~~v~~~g~~~~~pdGi~~~~dG~l~va~ 267 (332)
.-..=.++||| +++++....+ +||+.++++. .++.+...+ .....-...+||+.++-.
T Consensus 283 i~~~Ps~spdG~~ivf~Sdr~G~p~I~~~~~~g~-----~~~riT~~~---~~~~~p~~SpdG~~i~~~ 343 (425)
T COG0823 283 INTSPSWSPDGSKIVFTSDRGGRPQIYLYDLEGS-----QVTRLTFSG---GGNSNPVWSPDGDKIVFE 343 (425)
T ss_pred cccCccCCCCCCEEEEEeCCCCCcceEEECCCCC-----ceeEeeccC---CCCcCccCCCCCCEEEEE
Confidence 11123588999 7766655444 6899999866 344454332 111122345666655554
|
|
| >KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=93.40 E-value=7.1 Score=36.79 Aligned_cols=195 Identities=12% Similarity=0.116 Sum_probs=111.1
Q ss_pred EEEecCCccccceEEcCCC-CEEEEEecCCeEEEEECCCCCCCccceeeeEEecccCcCCCccceEEEeCCCCeEEEEEe
Q 020019 38 YHYHSSSFFRECAKWDDSG-RRFIVSFLDGGIGQVAVPDDYPPGTVLEEVTLVKDLELTGNGSLGLVLDHPRNRLLVVAA 116 (332)
Q Consensus 38 i~~~~~~~~pegia~d~~g-~~~~~~~~~g~I~~vd~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~vd~~~g~l~v~~~ 116 (332)
..+.+......-++|+|-- +++++...+..|..|+..+++. + ++ +.+|+ ....|.++.+ |.++++..
T Consensus 125 v~L~gH~rrVg~V~wHPtA~NVLlsag~Dn~v~iWnv~tgea---l---i~-l~hpd----~i~S~sfn~d-Gs~l~Ttc 192 (472)
T KOG0303|consen 125 VELYGHQRRVGLVQWHPTAPNVLLSAGSDNTVSIWNVGTGEA---L---IT-LDHPD----MVYSMSFNRD-GSLLCTTC 192 (472)
T ss_pred EEEeecceeEEEEeecccchhhHhhccCCceEEEEeccCCce---e---ee-cCCCC----eEEEEEeccC-Cceeeeec
Confidence 3344433344446777764 4555555678899999888763 1 12 22444 4678888886 77776654
Q ss_pred CcCCCccceEEEEECCCCcEEEEEecCCCCCCCCCccceEECCCCcEEEEeCC---CCeEEEEcCCCceEEEecCCCCCC
Q 020019 117 DVFGNKYSAVAAYDLSTWNRLFLTQLSGPSDGKSCADDVTVDAEGNAYVTDVT---GSKIWKVGVKGEFLSIISSPLFTP 193 (332)
Q Consensus 117 ~~~~~~~~~l~~~d~~~g~~~~~~~l~~~~~~~~~~ndiavd~dG~lyvtd~~---~~~I~~v~~~g~~~~~~~~~~~~~ 193 (332)
+..+|.+||+++|+++... . .-.+..+.-..+-.+|.++.|-.. .-++-..|++ .+..
T Consensus 193 -----kDKkvRv~dpr~~~~v~e~-~---~heG~k~~Raifl~~g~i~tTGfsr~seRq~aLwdp~----------nl~e 253 (472)
T KOG0303|consen 193 -----KDKKVRVIDPRRGTVVSEG-V---AHEGAKPARAIFLASGKIFTTGFSRMSERQIALWDPN----------NLEE 253 (472)
T ss_pred -----ccceeEEEcCCCCcEeeec-c---cccCCCcceeEEeccCceeeeccccccccceeccCcc----------cccC
Confidence 4568999999999987654 2 112456667777778875555322 2233333333 1222
Q ss_pred cccccCccccCeEE---EccCc-eEEEEeCCCCeEEEEeCCCCCCccceeEEEEecCCCCCCCCeEEEeCCCeEEEEe
Q 020019 194 KEWYKNLVGLNGIV---YHPDG-FLIVIHTFSGNLFKIDIVDGVGEGEEIKLIRVAGGPLSFGDGLELLSPTKLVVAG 267 (332)
Q Consensus 194 p~~~~~~~~~nGi~---~~~dG-~Lyva~~~~~~i~~id~~~~~~~~~~~~~v~~~g~~~~~pdGi~~~~dG~l~va~ 267 (332)
|.....+...||+- +|+|- -+|++--+.+.|.-+...... ..+..+..- +...-=.||.+-|.--|=|..
T Consensus 254 P~~~~elDtSnGvl~PFyD~dt~ivYl~GKGD~~IRYyEit~d~---P~~hyln~f-~S~epQRG~g~mPKRGl~Vs~ 327 (472)
T KOG0303|consen 254 PIALQELDTSNGVLLPFYDPDTSIVYLCGKGDSSIRYFEITNEP---PFVHYLNTF-SSKEPQRGMGFMPKRGLDVSK 327 (472)
T ss_pred cceeEEeccCCceEEeeecCCCCEEEEEecCCcceEEEEecCCC---ceeEEeccc-ccCCccccccccccccccchH
Confidence 22122344567776 57886 999998888888555554331 133333321 111112477776664455553
|
|
| >PF00058 Ldl_recept_b: Low-density lipoprotein receptor repeat class B; InterPro: IPR000033 The low-density lipoprotein receptor (LDLR) is the major cholesterol-carrying lipoprotein of plasma, acting to regulate cholesterol homeostasis in mammalian cells | Back alignment and domain information |
|---|
Probab=93.39 E-value=0.31 Score=30.55 Aligned_cols=41 Identities=24% Similarity=0.271 Sum_probs=30.2
Q ss_pred CcEEEEeCCCC-eEEEEcCCCceEEEecCCCCCCcccccCccccCeEEEcc
Q 020019 161 GNAYVTDVTGS-KIWKVGVKGEFLSIISSPLFTPKEWYKNLVGLNGIVYHP 210 (332)
Q Consensus 161 G~lyvtd~~~~-~I~~v~~~g~~~~~~~~~~~~~p~~~~~~~~~nGi~~~~ 210 (332)
|+||.||.... .|.+.+.+|.-.+.+-.. ....|+||++++
T Consensus 1 ~~iYWtD~~~~~~I~~a~~dGs~~~~vi~~---------~l~~P~giaVD~ 42 (42)
T PF00058_consen 1 GKIYWTDWSQDPSIERANLDGSNRRTVISD---------DLQHPEGIAVDW 42 (42)
T ss_dssp TEEEEEETTTTEEEEEEETTSTSEEEEEES---------STSSEEEEEEET
T ss_pred CEEEEEECCCCcEEEEEECCCCCeEEEEEC---------CCCCcCEEEECC
Confidence 57999999999 999999998754332222 234678999874
|
The LDL receptor binds LDL and transports it into cells by acidic endocytosis. In order to be internalized, the receptor-ligand complex must first cluster into clathrin-coated pits. Once inside the cell, the LDLR separates from its ligand, which is degraded in the lysosomes, while the receptor returns to the cell surface []. The internal dissociation of the LDLR with its ligand is mediated by proton pumps within the walls of the endosome that lower the pH. The LDLR is a multi-domain protein, containing: The ligand-binding domain contains seven or eight 40-amino acid LDLR class A (cysteine-rich) repeats, each of which contains a coordinated calcium ion and six cysteine residues involved in disulphide bond formation []. Similar domains have been found in other extracellular and membrane proteins []. The second conserved region contains two EGF repeats, followed by six LDLR class B (YWTD) repeats, and another EGF repeat. The LDLR class B repeats each contain a conserved YWTD motif, and is predicted to form a beta-propeller structure []. This region is critical for ligand release and recycling of the receptor []. The third domain is rich in serine and threonine residues and contains clustered O-linked carbohydrate chains. The fourth domain is the hydrophobic transmembrane region. The fifth domain is the cytoplasmic tail that directs the receptor to clathrin-coated pits. LDLR is closely related in structure to several other receptors, including LRP1, LRP1b, megalin/LRP2, VLDL receptor, lipoprotein receptor, MEGF7/LRP4, and LRP8/apolipoprotein E receptor2); these proteins participate in a wide range of physiological processes, including the regulation of lipid metabolism, protection against atherosclerosis, neurodevelopment, and transport of nutrients and vitamins []. This entry represents the LDLR classB (YWTD) repeat, the structure of which has been solved []. The six YWTD repeats together fold into a six-bladed beta-propeller. Each blade of the propeller consists of four antiparallel beta-strands; the innermost strand of each blade is labeled 1 and the outermost strand, 4. The sequence repeats are offset with respect to the blades of the propeller, such that any given 40-residue YWTD repeat spans strands 24 of one propeller blade and strand 1 of the subsequent blade. This offset ensures circularization of the propeller because the last strand of the final sequence repeat acts as an innermost strand 1 of the blade that harbors strands 24 from the first sequence repeat. The repeat is found in a variety of proteins that include, vitellogenin receptor from Drosophila melanogaster, low-density lipoprotein (LDL) receptor [], preproepidermal growth factor, and nidogen (entactin).; PDB: 3S2K_A 3S8Z_A 3S8V_B 4A0P_A 3SOB_B 3S94_B 4DG6_A 3SOV_A 3SOQ_A 1NPE_A .... |
| >KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only] | Back alignment and domain information |
|---|
Probab=93.37 E-value=9.2 Score=38.54 Aligned_cols=187 Identities=13% Similarity=0.129 Sum_probs=101.7
Q ss_pred cceEEcCCCCEEEEEecC------CeEEEEECCCCCCCccceeeeEEecccCcC-CCccceEEEeCCCCeEEEEEeCcCC
Q 020019 48 ECAKWDDSGRRFIVSFLD------GGIGQVAVPDDYPPGTVLEEVTLVKDLELT-GNGSLGLVLDHPRNRLLVVAADVFG 120 (332)
Q Consensus 48 egia~d~~g~~~~~~~~~------g~I~~vd~~~~~~~~~~~~~~~~~~~~~~~-~~~~~gi~vd~~~g~l~v~~~~~~~ 120 (332)
.++++-. |.+|++.-.+ ..++++|+.+.+| ..-+.+. .+.-.|+++-. |.||++.+..+.
T Consensus 326 ~~~~~~~-~~lYv~GG~~~~~~~l~~ve~YD~~~~~W----------~~~a~M~~~R~~~~v~~l~--g~iYavGG~dg~ 392 (571)
T KOG4441|consen 326 VGVAVLN-GKLYVVGGYDSGSDRLSSVERYDPRTNQW----------TPVAPMNTKRSDFGVAVLD--GKLYAVGGFDGE 392 (571)
T ss_pred ccEEEEC-CEEEEEccccCCCcccceEEEecCCCCce----------eccCCccCccccceeEEEC--CEEEEEeccccc
Confidence 3455543 4667665222 3588888876653 3323332 23456777664 899999764333
Q ss_pred CccceEEEEECCCCcEEEEEecCCCCCCCCCccceEECCCCcEEEEeC------CCCeEEEEcCCCceEEEecCCCCCCc
Q 020019 121 NKYSAVAAYDLSTWNRLFLTQLSGPSDGKSCADDVTVDAEGNAYVTDV------TGSKIWKVGVKGEFLSIISSPLFTPK 194 (332)
Q Consensus 121 ~~~~~l~~~d~~~g~~~~~~~l~~~~~~~~~~ndiavd~dG~lyvtd~------~~~~I~~v~~~g~~~~~~~~~~~~~p 194 (332)
.....+-+||+++.+......+.. .....++++ -+|.||+.-- .-..+.++||.... |..-+.+..+
T Consensus 393 ~~l~svE~YDp~~~~W~~va~m~~----~r~~~gv~~-~~g~iYi~GG~~~~~~~l~sve~YDP~t~~--W~~~~~M~~~ 465 (571)
T KOG4441|consen 393 KSLNSVECYDPVTNKWTPVAPMLT----RRSGHGVAV-LGGKLYIIGGGDGSSNCLNSVECYDPETNT--WTLIAPMNTR 465 (571)
T ss_pred cccccEEEecCCCCcccccCCCCc----ceeeeEEEE-ECCEEEEEcCcCCCccccceEEEEcCCCCc--eeecCCcccc
Confidence 344568899998876544333311 112223333 3578999743 22568889987442 2112233222
Q ss_pred ccccCccccCeEEEccCceEEEEeCCCC-----eEEEEeCCCCCCccceeEEEEecCCCCCCCCeEEEeCCCeEEEEeC
Q 020019 195 EWYKNLVGLNGIVYHPDGFLIVIHTFSG-----NLFKIDIVDGVGEGEEIKLIRVAGGPLSFGDGLELLSPTKLVVAGN 268 (332)
Q Consensus 195 ~~~~~~~~~nGi~~~~dG~Lyva~~~~~-----~i~~id~~~~~~~~~~~~~v~~~g~~~~~pdGi~~~~dG~l~va~~ 268 (332)
..-.|++.- ++.||+.-..++ ++.++|+.+. .-..+..- ..-...-|++.. ++++|+.+.
T Consensus 466 ------R~~~g~a~~-~~~iYvvGG~~~~~~~~~VE~ydp~~~-----~W~~v~~m-~~~rs~~g~~~~-~~~ly~vGG 530 (571)
T KOG4441|consen 466 ------RSGFGVAVL-NGKIYVVGGFDGTSALSSVERYDPETN-----QWTMVAPM-TSPRSAVGVVVL-GGKLYAVGG 530 (571)
T ss_pred ------cccceEEEE-CCEEEEECCccCCCccceEEEEcCCCC-----ceeEcccC-ccccccccEEEE-CCEEEEEec
Confidence 233466654 678998765433 3678888865 22222211 111223455554 579999963
|
|
| >PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A | Back alignment and domain information |
|---|
Probab=93.20 E-value=6.2 Score=37.37 Aligned_cols=133 Identities=14% Similarity=0.186 Sum_probs=63.5
Q ss_pred ceeEEEecC-----CccccceEEcCCCCEE-EEE-e-cCCeEEEEECCCCCCCccceeeeEEecccCcCCCccceEEEeC
Q 020019 35 THVYHYHSS-----SFFRECAKWDDSGRRF-IVS-F-LDGGIGQVAVPDDYPPGTVLEEVTLVKDLELTGNGSLGLVLDH 106 (332)
Q Consensus 35 ~~~i~~~~~-----~~~pegia~d~~g~~~-~~~-~-~~g~I~~vd~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~vd~ 106 (332)
-.++++... .+|...-.|.++|+.+ |.+ . ...+++.+|..+++. . ++-..++ ....|..+.+
T Consensus 21 ~~VtrLT~~~~~~h~~YF~~~~ft~dG~kllF~s~~dg~~nly~lDL~t~~i-----~--QLTdg~g---~~~~g~~~s~ 90 (386)
T PF14583_consen 21 HRVTRLTPPDGHSHRLYFYQNCFTDDGRKLLFASDFDGNRNLYLLDLATGEI-----T--QLTDGPG---DNTFGGFLSP 90 (386)
T ss_dssp -EEEE-S-TTS-EE---TTS--B-TTS-EEEEEE-TTSS-EEEEEETTT-EE-----E--E---SS----B-TTT-EE-T
T ss_pred ceEEEecCCCCcccceeecCCCcCCCCCEEEEEeccCCCcceEEEEcccCEE-----E--ECccCCC---CCccceEEec
Confidence 456666432 2577778888999644 444 2 245799999998762 2 2332222 2334566667
Q ss_pred CCCeEEEEEeCcCCCccceEEEEECCCCcEEEEEecCCCCCCCCCc-cceEECCCCcEEEEeC-----------------
Q 020019 107 PRNRLLVVAADVFGNKYSAVAAYDLSTWNRLFLTQLSGPSDGKSCA-DDVTVDAEGNAYVTDV----------------- 168 (332)
Q Consensus 107 ~~g~l~v~~~~~~~~~~~~l~~~d~~~g~~~~~~~l~~~~~~~~~~-ndiavd~dG~lyvtd~----------------- 168 (332)
++..+|.+.. ...|..+|+++.+....+.++ . .-.. ...+++.|+..++...
T Consensus 91 ~~~~~~Yv~~------~~~l~~vdL~T~e~~~vy~~p--~--~~~g~gt~v~n~d~t~~~g~e~~~~d~~~l~~~~~f~e 160 (386)
T PF14583_consen 91 DDRALYYVKN------GRSLRRVDLDTLEERVVYEVP--D--DWKGYGTWVANSDCTKLVGIEISREDWKPLTKWKGFRE 160 (386)
T ss_dssp TSSEEEEEET------TTEEEEEETTT--EEEEEE----T--TEEEEEEEEE-TTSSEEEEEEEEGGG-----SHHHHHH
T ss_pred CCCeEEEEEC------CCeEEEEECCcCcEEEEEECC--c--ccccccceeeCCCccEEEEEEEeehhccCccccHHHHH
Confidence 6566655543 136899999998877777773 2 1111 2233466777665421
Q ss_pred -----CCCeEEEEcCC-CceEEEec
Q 020019 169 -----TGSKIWKVGVK-GEFLSIIS 187 (332)
Q Consensus 169 -----~~~~I~~v~~~-g~~~~~~~ 187 (332)
...+|++++.+ |+...++.
T Consensus 161 ~~~a~p~~~i~~idl~tG~~~~v~~ 185 (386)
T PF14583_consen 161 FYEARPHCRIFTIDLKTGERKVVFE 185 (386)
T ss_dssp HHHC---EEEEEEETTT--EEEEEE
T ss_pred HHhhCCCceEEEEECCCCceeEEEe
Confidence 13578899976 55555443
|
|
| >smart00284 OLF Olfactomedin-like domains | Back alignment and domain information |
|---|
Probab=93.13 E-value=6.1 Score=35.30 Aligned_cols=155 Identities=17% Similarity=0.196 Sum_probs=87.0
Q ss_pred CCEEEEEecCCeEEEEECCCCCCCccceeeeEEecccCcC--------CCccceEEEeCCCCeEEEEEeCcCCCccceEE
Q 020019 56 GRRFIVSFLDGGIGQVAVPDDYPPGTVLEEVTLVKDLELT--------GNGSLGLVLDHPRNRLLVVAADVFGNKYSAVA 127 (332)
Q Consensus 56 g~~~~~~~~~g~I~~vd~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~gi~vd~~~g~l~v~~~~~~~~~~~~l~ 127 (332)
|.+||-...+..|.|+|..++.. ..+ ..+...+.. +..-..+++|+. | |||.-......+.=.|.
T Consensus 84 gslYY~~~~s~~iiKydL~t~~v----~~~-~~Lp~a~y~~~~~Y~~~~~sdiDlAvDE~-G-LWvIYat~~~~g~ivvS 156 (255)
T smart00284 84 GSLYFNKFNSHDICRFDLTTETY----QKE-PLLNGAGYNNRFPYAWGGFSDIDLAVDEN-G-LWVIYATEQNAGKIVIS 156 (255)
T ss_pred ceEEEEecCCccEEEEECCCCcE----EEE-EecCccccccccccccCCCccEEEEEcCC-c-eEEEEeccCCCCCEEEE
Confidence 67777555668899999987652 211 222211111 112357889874 5 68885432211122355
Q ss_pred EEECCCCcEEEEEecCCCCCCCCCccceEECCCCcEEEEeCC---CCe-EEEEcCCCceEEEecCCCCCCcccccCcccc
Q 020019 128 AYDLSTWNRLFLTQLSGPSDGKSCADDVTVDAEGNAYVTDVT---GSK-IWKVGVKGEFLSIISSPLFTPKEWYKNLVGL 203 (332)
Q Consensus 128 ~~d~~~g~~~~~~~l~~~~~~~~~~ndiavd~dG~lyvtd~~---~~~-I~~v~~~g~~~~~~~~~~~~~p~~~~~~~~~ 203 (332)
++|+.+-+++..+...-+ .....|.+.+ .|.||++++. ..+ -+.+|..+....... -.|.. .....
T Consensus 157 kLnp~tL~ve~tW~T~~~--k~sa~naFmv--CGvLY~~~s~~~~~~~I~yayDt~t~~~~~~~-i~f~n-----~y~~~ 226 (255)
T smart00284 157 KLNPATLTIENTWITTYN--KRSASNAFMI--CGILYVTRSLGSKGEKVFYAYDTNTGKEGHLD-IPFEN-----MYEYI 226 (255)
T ss_pred eeCcccceEEEEEEcCCC--cccccccEEE--eeEEEEEccCCCCCcEEEEEEECCCCccceee-eeecc-----ccccc
Confidence 789888888877776322 2344555555 5889999862 233 446776632221111 11211 12345
Q ss_pred CeEEEccCc-eEEEEeCCCCeEEEEeC
Q 020019 204 NGIVYHPDG-FLIVIHTFSGNLFKIDI 229 (332)
Q Consensus 204 nGi~~~~dG-~Lyva~~~~~~i~~id~ 229 (332)
..|.++|.. .||+-| ++.+..+++
T Consensus 227 s~l~YNP~d~~LY~wd--ng~~l~Y~v 251 (255)
T smart00284 227 SMLDYNPNDRKLYAWN--NGHLVHYDI 251 (255)
T ss_pred eeceeCCCCCeEEEEe--CCeEEEEEE
Confidence 678999988 999865 455544443
|
|
| >TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family | Back alignment and domain information |
|---|
Probab=93.08 E-value=3.7 Score=42.76 Aligned_cols=68 Identities=10% Similarity=0.148 Sum_probs=43.9
Q ss_pred CeEEEEEeCcCCCccceEEEEECCCCcEEEEEecCCCCCC---CCCccceEECC-----------------CCcEEEEeC
Q 020019 109 NRLLVVAADVFGNKYSAVAAYDLSTWNRLFLTQLSGPSDG---KSCADDVTVDA-----------------EGNAYVTDV 168 (332)
Q Consensus 109 g~l~v~~~~~~~~~~~~l~~~d~~~g~~~~~~~l~~~~~~---~~~~ndiavd~-----------------dG~lyvtd~ 168 (332)
|+||+|+. .+.|+.+|.++|+.++.++...+... ...++++++-. +++||+..
T Consensus 195 g~lYv~t~------~~~V~ALDa~TGk~lW~~d~~~~~~~~~~~~~cRGvay~~~p~~~~~~~~~~~p~~~~~rV~~~T- 267 (764)
T TIGR03074 195 DTLYLCTP------HNKVIALDAATGKEKWKFDPKLKTEAGRQHQTCRGVSYYDAPAAAAGPAAPAAPADCARRIILPT- 267 (764)
T ss_pred CEEEEECC------CCeEEEEECCCCcEEEEEcCCCCcccccccccccceEEecCCcccccccccccccccCCEEEEec-
Confidence 89999975 35799999999999888765332110 01234444421 23677754
Q ss_pred CCCeEEEEcCC-CceE
Q 020019 169 TGSKIWKVGVK-GEFL 183 (332)
Q Consensus 169 ~~~~I~~v~~~-g~~~ 183 (332)
..++|+.+|.+ |+..
T Consensus 268 ~Dg~LiALDA~TGk~~ 283 (764)
T TIGR03074 268 SDARLIALDADTGKLC 283 (764)
T ss_pred CCCeEEEEECCCCCEE
Confidence 36788888876 6654
|
This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases. |
| >PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families | Back alignment and domain information |
|---|
Probab=93.05 E-value=7.8 Score=36.30 Aligned_cols=145 Identities=12% Similarity=0.079 Sum_probs=81.6
Q ss_pred EEEeCCCCe-EEEEEeCcCCCccceEEEEECCCCcEEEEEecCCCCCCCCCccceEEC-CCCc--EEEEeC-CCCeEEEE
Q 020019 102 LVLDHPRNR-LLVVAADVFGNKYSAVAAYDLSTWNRLFLTQLSGPSDGKSCADDVTVD-AEGN--AYVTDV-TGSKIWKV 176 (332)
Q Consensus 102 i~vd~~~g~-l~v~~~~~~~~~~~~l~~~d~~~g~~~~~~~l~~~~~~~~~~ndiavd-~dG~--lyvtd~-~~~~I~~v 176 (332)
+...++ ++ +++.-.... ++...+..+|.++++......-..++ =......+.+- ++++ +++++. +-..|+.+
T Consensus 189 v~W~~d-~~~l~~~~~nR~-q~~~~l~~~d~~tg~~~~~~~e~~~~-Wv~~~~~~~~~~~~~~~~l~~s~~~G~~hly~~ 265 (353)
T PF00930_consen 189 VGWSPD-GKRLWVQWLNRD-QNRLDLVLCDASTGETRVVLEETSDG-WVDVYDPPHFLGPDGNEFLWISERDGYRHLYLY 265 (353)
T ss_dssp EEEEET-TEEEEEEEEETT-STEEEEEEEEECTTTCEEEEEEESSS-SSSSSSEEEE-TTTSSEEEEEEETTSSEEEEEE
T ss_pred ceecCC-CcEEEEEEcccC-CCEEEEEEEECCCCceeEEEEecCCc-ceeeecccccccCCCCEEEEEEEcCCCcEEEEE
Confidence 444444 44 666654322 13446778898887654333221111 11233445543 5543 566663 23479999
Q ss_pred cCCCceEEEecCCCCCCcccccCccccCeEEEccCc-eEEEEeCC----CCeEEEEeCC-CCCCccceeEEEEecCCCCC
Q 020019 177 GVKGEFLSIISSPLFTPKEWYKNLVGLNGIVYHPDG-FLIVIHTF----SGNLFKIDIV-DGVGEGEEIKLIRVAGGPLS 250 (332)
Q Consensus 177 ~~~g~~~~~~~~~~~~~p~~~~~~~~~nGi~~~~dG-~Lyva~~~----~~~i~~id~~-~~~~~~~~~~~v~~~g~~~~ 250 (332)
+.+|...+.+....+.. -.=+.+++++ .||+.-.. ...||+++++ ++ ..+.+.-. .
T Consensus 266 ~~~~~~~~~lT~G~~~V---------~~i~~~d~~~~~iyf~a~~~~p~~r~lY~v~~~~~~-----~~~~LT~~----~ 327 (353)
T PF00930_consen 266 DLDGGKPRQLTSGDWEV---------TSILGWDEDNNRIYFTANGDNPGERHLYRVSLDSGG-----EPKCLTCE----D 327 (353)
T ss_dssp ETTSSEEEESS-SSS-E---------EEEEEEECTSSEEEEEESSGGTTSBEEEEEETTETT-----EEEESSTT----S
T ss_pred cccccceeccccCceee---------cccceEcCCCCEEEEEecCCCCCceEEEEEEeCCCC-----CeEeccCC----C
Confidence 99987655543333321 1246788887 88887765 4589999999 55 34433211 2
Q ss_pred CCC-eEEEeCCCeEEEEe
Q 020019 251 FGD-GLELLSPTKLVVAG 267 (332)
Q Consensus 251 ~pd-Gi~~~~dG~l~va~ 267 (332)
... .+.+.++|+.|+-.
T Consensus 328 ~~~~~~~~Spdg~y~v~~ 345 (353)
T PF00930_consen 328 GDHYSASFSPDGKYYVDT 345 (353)
T ss_dssp STTEEEEE-TTSSEEEEE
T ss_pred CCceEEEECCCCCEEEEE
Confidence 333 78899999887764
|
Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: |
| >PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation | Back alignment and domain information |
|---|
Probab=92.93 E-value=6.5 Score=35.07 Aligned_cols=142 Identities=17% Similarity=0.213 Sum_probs=75.9
Q ss_pred CccceEECCCCc-EEEEe--CCCCeEEEEcCCCceEEEecCCCCCCcccccCccccCeEEEccCceEEEEeCCCCeEEEE
Q 020019 151 CADDVTVDAEGN-AYVTD--VTGSKIWKVGVKGEFLSIISSPLFTPKEWYKNLVGLNGIVYHPDGFLIVIHTFSGNLFKI 227 (332)
Q Consensus 151 ~~ndiavd~dG~-lyvtd--~~~~~I~~v~~~g~~~~~~~~~~~~~p~~~~~~~~~nGi~~~~dG~Lyva~~~~~~i~~i 227 (332)
.+...++.++|+ +.+.. .....++....++..........+..| .|+++|.+|+..........+
T Consensus 25 ~~~s~AvS~dg~~~A~v~~~~~~~~L~~~~~~~~~~~~~~g~~l~~P------------S~d~~g~~W~v~~~~~~~~~~ 92 (253)
T PF10647_consen 25 DVTSPAVSPDGSRVAAVSEGDGGRSLYVGPAGGPVRPVLTGGSLTRP------------SWDPDGWVWTVDDGSGGVRVV 92 (253)
T ss_pred cccceEECCCCCeEEEEEEcCCCCEEEEEcCCCcceeeccCCccccc------------cccCCCCEEEEEcCCCceEEE
Confidence 577799999986 43433 455678888777665554322233333 689999999988765544333
Q ss_pred -eCCCCCCccceeEEEEecCCCCC-CCCeEEEeCCCe--EEEEe-CC--ce---EEEEcCCCceEEEEEeeec--CCCcc
Q 020019 228 -DIVDGVGEGEEIKLIRVAGGPLS-FGDGLELLSPTK--LVVAG-NP--SA---RLVESSDGWETAAVVAKFS--GPVHR 295 (332)
Q Consensus 228 -d~~~~~~~~~~~~~v~~~g~~~~-~pdGi~~~~dG~--l~va~-~~--~~---~~v~~~dg~~~~~~~~~~~--~~~~~ 295 (332)
+...++. ....+..+ ... ....+.+.+||. .++.. .. .. .+++..+| ....+..... .+.+.
T Consensus 93 ~~~~~g~~---~~~~v~~~--~~~~~I~~l~vSpDG~RvA~v~~~~~~~~v~va~V~r~~~g-~~~~l~~~~~~~~~~~~ 166 (253)
T PF10647_consen 93 RDSASGTG---EPVEVDWP--GLRGRITALRVSPDGTRVAVVVEDGGGGRVYVAGVVRDGDG-VPRRLTGPRRVAPPLLS 166 (253)
T ss_pred EecCCCcc---eeEEeccc--ccCCceEEEEECCCCcEEEEEEecCCCCeEEEEEEEeCCCC-CcceeccceEecccccC
Confidence 2223321 22223332 112 445677788876 22331 11 11 12234444 1222222211 12244
Q ss_pred cceEEEE-ECCeEEEE
Q 020019 296 LATAATV-KDGRVYLN 310 (332)
Q Consensus 296 ~pt~va~-~~g~lyv~ 310 (332)
..+.+.+ .+++|.|.
T Consensus 167 ~v~~v~W~~~~~L~V~ 182 (253)
T PF10647_consen 167 DVTDVAWSDDSTLVVL 182 (253)
T ss_pred cceeeeecCCCEEEEE
Confidence 5677888 78888884
|
It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues. |
| >KOG3545 consensus Olfactomedin and related extracellular matrix glycoproteins [Extracellular structures] | Back alignment and domain information |
|---|
Probab=92.77 E-value=2.5 Score=37.26 Aligned_cols=132 Identities=20% Similarity=0.262 Sum_probs=75.1
Q ss_pred ceEEEEECCCCcEEEEEecCCCCCCCCCc----------cceEECCCCc--EEEEeCCCCe--EEEEcCCC-ceEEEecC
Q 020019 124 SAVAAYDLSTWNRLFLTQLSGPSDGKSCA----------DDVTVDAEGN--AYVTDVTGSK--IWKVGVKG-EFLSIISS 188 (332)
Q Consensus 124 ~~l~~~d~~~g~~~~~~~l~~~~~~~~~~----------ndiavd~dG~--lyvtd~~~~~--I~~v~~~g-~~~~~~~~ 188 (332)
..|.+||+++........++. .+-..+ .|+|+|.+|- +|-|....+. |.++++.. +....++.
T Consensus 88 ~~ivky~l~~~~~~~~~~lp~--a~y~~~~~y~~~g~sdiD~avDE~GLWviYat~~~~g~iv~skLdp~tl~~e~tW~T 165 (249)
T KOG3545|consen 88 RNIIKYDLETRTVAGSAALPY--AGYHNPSPYYWGGHSDIDLAVDENGLWVIYATPENAGTIVLSKLDPETLEVERTWNT 165 (249)
T ss_pred cceEEEEeecceeeeeeeccc--cccCCCcccccCCCccccceecccceeEEecccccCCcEEeeccCHHHhheeeeecc
Confidence 458899999865554445532 212233 7899999992 3445544443 35788842 22222221
Q ss_pred CCCCCcccccCccccCeEEEccCceEEEEeCCC---CeE-EEEeCCCCCCccceeEEEEecCCCCCCCCeEEEeC-CCeE
Q 020019 189 PLFTPKEWYKNLVGLNGIVYHPDGFLIVIHTFS---GNL-FKIDIVDGVGEGEEIKLIRVAGGPLSFGDGLELLS-PTKL 263 (332)
Q Consensus 189 ~~~~~p~~~~~~~~~nGi~~~~dG~Lyva~~~~---~~i-~~id~~~~~~~~~~~~~v~~~g~~~~~pdGi~~~~-dG~l 263 (332)
. .. .....+++.+. |.||+.++.+ ..| +.+|..+++. ....++++ ........+-..| |.+|
T Consensus 166 ~-~~------k~~~~~aF~iC--GvLY~v~S~~~~~~~i~yaydt~~~~~---~~~~ipf~-N~y~~~~~idYNP~D~~L 232 (249)
T KOG3545|consen 166 T-LP------KRSAGNAFMIC--GVLYVVHSYNCTHTQISYAYDTTTGTQ---ERIDLPFP-NPYSYATMIDYNPRDRRL 232 (249)
T ss_pred c-cC------CCCcCceEEEe--eeeEEEeccccCCceEEEEEEcCCCce---eccccccc-chhhhhhccCCCccccee
Confidence 1 11 12334667776 8999998853 234 6777776631 11223333 2344455666666 7889
Q ss_pred EEEeCCc
Q 020019 264 VVAGNPS 270 (332)
Q Consensus 264 ~va~~~~ 270 (332)
|+-+|..
T Consensus 233 Y~wdng~ 239 (249)
T KOG3545|consen 233 YAWDNGH 239 (249)
T ss_pred eEecCCc
Confidence 9998875
|
|
| >KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=92.43 E-value=8.5 Score=35.19 Aligned_cols=195 Identities=13% Similarity=0.110 Sum_probs=102.3
Q ss_pred ceEEcCCCCEEEEEecCCeEEEEECCCCCCCccceeeeEEec-ccCc---------CC-CccceEEEeCCCCeEEEEEeC
Q 020019 49 CAKWDDSGRRFIVSFLDGGIGQVAVPDDYPPGTVLEEVTLVK-DLEL---------TG-NGSLGLVLDHPRNRLLVVAAD 117 (332)
Q Consensus 49 gia~d~~g~~~~~~~~~g~I~~vd~~~~~~~~~~~~~~~~~~-~~~~---------~~-~~~~gi~vd~~~g~l~v~~~~ 117 (332)
.-++++||.++-+...+..|-.+|...--.++.+. +++. ++.. .+ ..++.+.++|. ..+.+...
T Consensus 117 ~aafs~DG~lvATGsaD~SIKildvermlaks~~~---em~~~~~qa~hPvIRTlYDH~devn~l~FHPr-e~ILiS~s- 191 (430)
T KOG0640|consen 117 AAAFSPDGSLVATGSADASIKILDVERMLAKSKPK---EMISGDTQARHPVIRTLYDHVDEVNDLDFHPR-ETILISGS- 191 (430)
T ss_pred eeeeCCCCcEEEccCCcceEEEeehhhhhhhcchh---hhccCCcccCCceEeehhhccCcccceeecch-hheEEecc-
Confidence 45789999877666555566555543100000001 1111 0110 00 14578899995 77777653
Q ss_pred cCCCccceEEEEECCCCcEEEEEecCCCCCCCCCccceEECCCCcEEEEeCCCCeEEEEcCCCceEEEe-cCCCCCCccc
Q 020019 118 VFGNKYSAVAAYDLSTWNRLFLTQLSGPSDGKSCADDVTVDAEGNAYVTDVTGSKIWKVGVKGEFLSII-SSPLFTPKEW 196 (332)
Q Consensus 118 ~~~~~~~~l~~~d~~~g~~~~~~~l~~~~~~~~~~ndiavd~dG~lyvtd~~~~~I~~v~~~g~~~~~~-~~~~~~~p~~ 196 (332)
+.+.+..||...-...+.... -+.......+.+.|.|.....-+..+.+..+|.... .-++ .++.-.
T Consensus 192 ----rD~tvKlFDfsK~saKrA~K~---~qd~~~vrsiSfHPsGefllvgTdHp~~rlYdv~T~-QcfvsanPd~q---- 259 (430)
T KOG0640|consen 192 ----RDNTVKLFDFSKTSAKRAFKV---FQDTEPVRSISFHPSGEFLLVGTDHPTLRLYDVNTY-QCFVSANPDDQ---- 259 (430)
T ss_pred ----CCCeEEEEecccHHHHHHHHH---hhccceeeeEeecCCCceEEEecCCCceeEEeccce-eEeeecCcccc----
Confidence 345677788753222211111 011233456899999986666566666555555422 2222 122111
Q ss_pred ccCccccCeEEEccCceEEEEeCCCCeEEEEeCCCCCCccceeEEEEecCCCCCCCCeEEEeCCCeEEEEe
Q 020019 197 YKNLVGLNGIVYHPDGFLIVIHTFSGNLFKIDIVDGVGEGEEIKLIRVAGGPLSFGDGLELLSPTKLVVAG 267 (332)
Q Consensus 197 ~~~~~~~nGi~~~~dG~Lyva~~~~~~i~~id~~~~~~~~~~~~~v~~~g~~~~~pdGi~~~~dG~l~va~ 267 (332)
.....+.+-+++.|.|||+-+..|.|--+|=-.++ -+..+.-. ......-...+..+|+.+.+.
T Consensus 260 --ht~ai~~V~Ys~t~~lYvTaSkDG~IklwDGVS~r----Cv~t~~~A-H~gsevcSa~Ftkn~kyiLsS 323 (430)
T KOG0640|consen 260 --HTGAITQVRYSSTGSLYVTASKDGAIKLWDGVSNR----CVRTIGNA-HGGSEVCSAVFTKNGKYILSS 323 (430)
T ss_pred --cccceeEEEecCCccEEEEeccCCcEEeeccccHH----HHHHHHhh-cCCceeeeEEEccCCeEEeec
Confidence 12356888999999999999999988666533221 12222110 011223345667777766664
|
|
| >KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=92.39 E-value=2.7 Score=39.53 Aligned_cols=183 Identities=13% Similarity=0.075 Sum_probs=114.3
Q ss_pred ccceEEcCCCCEEEEEecCCeEEEEECCCCCCCccceeeeEEecccCcCCCccceEEEeCCCCeEEEEEeCcCCCccceE
Q 020019 47 RECAKWDDSGRRFIVSFLDGGIGQVAVPDDYPPGTVLEEVTLVKDLELTGNGSLGLVLDHPRNRLLVVAADVFGNKYSAV 126 (332)
Q Consensus 47 pegia~d~~g~~~~~~~~~g~I~~vd~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~vd~~~g~l~v~~~~~~~~~~~~l 126 (332)
..++++++....|++...+|+|..+|-...+ ++ ..+...+. -+..+..+|..+.+..... .+-|
T Consensus 183 IRdlafSpnDskF~t~SdDg~ikiWdf~~~k------ee-~vL~GHgw---dVksvdWHP~kgLiasgsk------DnlV 246 (464)
T KOG0284|consen 183 IRDLAFSPNDSKFLTCSDDGTIKIWDFRMPK------EE-RVLRGHGW---DVKSVDWHPTKGLIASGSK------DNLV 246 (464)
T ss_pred hheeccCCCCceeEEecCCCeEEEEeccCCc------hh-heeccCCC---CcceeccCCccceeEEccC------Ccee
Confidence 4578999998889888889999999865433 22 33433433 3667888887554444333 3457
Q ss_pred EEEECCCCcEEEEEecCCCCCCCCCccceEECCCCcEEEEeCCCCeEEEEcCCC--ceEEEecCCCCCCcccccCccccC
Q 020019 127 AAYDLSTWNRLFLTQLSGPSDGKSCADDVTVDAEGNAYVTDVTGSKIWKVGVKG--EFLSIISSPLFTPKEWYKNLVGLN 204 (332)
Q Consensus 127 ~~~d~~~g~~~~~~~l~~~~~~~~~~ndiavd~dG~lyvtd~~~~~I~~v~~~g--~~~~~~~~~~~~~p~~~~~~~~~n 204 (332)
..||+++|.-+.. +. .-....-.+.+.++|+...|-+....+-.+|... +..++-.+. .-..
T Consensus 247 KlWDprSg~cl~t--lh---~HKntVl~~~f~~n~N~Llt~skD~~~kv~DiR~mkEl~~~r~Hk-----------kdv~ 310 (464)
T KOG0284|consen 247 KLWDPRSGSCLAT--LH---GHKNTVLAVKFNPNGNWLLTGSKDQSCKVFDIRTMKELFTYRGHK-----------KDVT 310 (464)
T ss_pred EeecCCCcchhhh--hh---hccceEEEEEEcCCCCeeEEccCCceEEEEehhHhHHHHHhhcch-----------hhhe
Confidence 7799999875432 21 1124455688899999988888877777777552 111111111 1245
Q ss_pred eEEEccCc-eEEEEeCCCCeEEEEeCCCCCCccceeEEEEecCCCCCCCCeEEEeCCCeEEEEe
Q 020019 205 GIVYHPDG-FLIVIHTFSGNLFKIDIVDGVGEGEEIKLIRVAGGPLSFGDGLELLSPTKLVVAG 267 (332)
Q Consensus 205 Gi~~~~dG-~Lyva~~~~~~i~~id~~~~~~~~~~~~~v~~~g~~~~~pdGi~~~~dG~l~va~ 267 (332)
.++++|=- .|+++-...+.|......... ++..+.. +.-.....|+..|=|.|+.+.
T Consensus 311 ~~~WhP~~~~lftsgg~Dgsvvh~~v~~~~----p~~~i~~--AHd~~iwsl~~hPlGhil~tg 368 (464)
T KOG0284|consen 311 SLTWHPLNESLFTSGGSDGSVVHWVVGLEE----PLGEIPP--AHDGEIWSLAYHPLGHILATG 368 (464)
T ss_pred eeccccccccceeeccCCCceEEEeccccc----cccCCCc--ccccceeeeeccccceeEeec
Confidence 77888877 788887778888666655221 2222221 122345667777888888775
|
|
| >KOG0294 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=92.12 E-value=9.3 Score=34.95 Aligned_cols=138 Identities=12% Similarity=0.079 Sum_probs=83.1
Q ss_pred cceEEEeCCCCeEEEEEeCcCCCccceEEEEECCCCcEEEEEecCCCCCCCCCccceEECCCC--cEEEEeCCCCeEEEE
Q 020019 99 SLGLVLDHPRNRLLVVAADVFGNKYSAVAAYDLSTWNRLFLTQLSGPSDGKSCADDVTVDAEG--NAYVTDVTGSKIWKV 176 (332)
Q Consensus 99 ~~gi~vd~~~g~l~v~~~~~~~~~~~~l~~~d~~~g~~~~~~~l~~~~~~~~~~ndiavd~dG--~lyvtd~~~~~I~~v 176 (332)
...++++. . |++.+. ....|.+||++........-. + ....+.+.+++.- +-.++.+.+|.|...
T Consensus 46 itavAVs~---~-~~aSGs----sDetI~IYDm~k~~qlg~ll~--H---agsitaL~F~~~~S~shLlS~sdDG~i~iw 112 (362)
T KOG0294|consen 46 ITALAVSG---P-YVASGS----SDETIHIYDMRKRKQLGILLS--H---AGSITALKFYPPLSKSHLLSGSDDGHIIIW 112 (362)
T ss_pred eeEEEecc---e-eEeccC----CCCcEEEEeccchhhhcceec--c---ccceEEEEecCCcchhheeeecCCCcEEEE
Confidence 45677763 3 888764 345689999976443321111 1 3456667777763 245566667776666
Q ss_pred cCCCc-eEEEecCCCCCCcccccCccccCeEEEccCceEEEEeCCCCeEEEEeCCCCCCccceeEEEEecCCCCCCCCeE
Q 020019 177 GVKGE-FLSIISSPLFTPKEWYKNLVGLNGIVYHPDGFLIVIHTFSGNLFKIDIVDGVGEGEEIKLIRVAGGPLSFGDGL 255 (332)
Q Consensus 177 ~~~g~-~~~~~~~~~~~~p~~~~~~~~~nGi~~~~dG~Lyva~~~~~~i~~id~~~~~~~~~~~~~v~~~g~~~~~pdGi 255 (332)
+.+-- ..-.+.. .-...|+|+++|.|.|-.+-.+...+.-+++-.|+. ....++. ..+.-+
T Consensus 113 ~~~~W~~~~slK~----------H~~~Vt~lsiHPS~KLALsVg~D~~lr~WNLV~Gr~----a~v~~L~----~~at~v 174 (362)
T KOG0294|consen 113 RVGSWELLKSLKA----------HKGQVTDLSIHPSGKLALSVGGDQVLRTWNLVRGRV----AFVLNLK----NKATLV 174 (362)
T ss_pred EcCCeEEeeeecc----------cccccceeEecCCCceEEEEcCCceeeeehhhcCcc----ceeeccC----Ccceee
Confidence 65421 1111111 123479999999999998888888888888876632 2222332 234458
Q ss_pred EEeCCCeEEEEe
Q 020019 256 ELLSPTKLVVAG 267 (332)
Q Consensus 256 ~~~~dG~l~va~ 267 (332)
.+++.|.-|+..
T Consensus 175 ~w~~~Gd~F~v~ 186 (362)
T KOG0294|consen 175 SWSPQGDHFVVS 186 (362)
T ss_pred EEcCCCCEEEEE
Confidence 888888855554
|
|
| >PHA02713 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=92.09 E-value=14 Score=37.03 Aligned_cols=99 Identities=7% Similarity=-0.063 Sum_probs=50.8
Q ss_pred eEEEEECCCCCCCccceeeeEEecccCcCCCccceEEEeCCCCeEEEEEeCc-CCCccceEEEEECCCCcEEEEEecCCC
Q 020019 67 GIGQVAVPDDYPPGTVLEEVTLVKDLELTGNGSLGLVLDHPRNRLLVVAADV-FGNKYSAVAAYDLSTWNRLFLTQLSGP 145 (332)
Q Consensus 67 ~I~~vd~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~vd~~~g~l~v~~~~~-~~~~~~~l~~~d~~~g~~~~~~~l~~~ 145 (332)
.+..+|+.++++. .+...|. .....+.++-. |.||++.+.. .......+..||+++++......++
T Consensus 273 ~v~~yd~~~~~W~-------~l~~mp~--~r~~~~~a~l~--~~IYviGG~~~~~~~~~~v~~Yd~~~n~W~~~~~m~-- 339 (557)
T PHA02713 273 CILVYNINTMEYS-------VISTIPN--HIINYASAIVD--NEIIIAGGYNFNNPSLNKVYKINIENKIHVELPPMI-- 339 (557)
T ss_pred CEEEEeCCCCeEE-------ECCCCCc--cccceEEEEEC--CEEEEEcCCCCCCCccceEEEEECCCCeEeeCCCCc--
Confidence 5778888766531 1211121 11223455542 7899985421 1112356889999886643222221
Q ss_pred CCCCCCccceEECCCCcEEEEeCC-----CCeEEEEcCCCc
Q 020019 146 SDGKSCADDVTVDAEGNAYVTDVT-----GSKIWKVGVKGE 181 (332)
Q Consensus 146 ~~~~~~~ndiavd~dG~lyvtd~~-----~~~I~~v~~~g~ 181 (332)
..+.+..++--+|.||+.-.. ...+.++|+...
T Consensus 340 ---~~R~~~~~~~~~g~IYviGG~~~~~~~~sve~Ydp~~~ 377 (557)
T PHA02713 340 ---KNRCRFSLAVIDDTIYAIGGQNGTNVERTIECYTMGDD 377 (557)
T ss_pred ---chhhceeEEEECCEEEEECCcCCCCCCceEEEEECCCC
Confidence 122222223335789986432 235788888743
|
|
| >KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=92.07 E-value=8.6 Score=34.41 Aligned_cols=101 Identities=15% Similarity=0.161 Sum_probs=59.8
Q ss_pred CCEEEEEecCCeEEEEECCCCCCCccceeeeEEec-ccCcCCCccceEEEeCCCCeEEEEEeCcCCCccceEEEEECCCC
Q 020019 56 GRRFIVSFLDGGIGQVAVPDDYPPGTVLEEVTLVK-DLELTGNGSLGLVLDHPRNRLLVVAADVFGNKYSAVAAYDLSTW 134 (332)
Q Consensus 56 g~~~~~~~~~g~I~~vd~~~~~~~~~~~~~~~~~~-~~~~~~~~~~gi~vd~~~g~l~v~~~~~~~~~~~~l~~~d~~~g 134 (332)
|+..+..-.+|.+|.++..++.. -|.. .-+.. .. --..|.+.|.+|....+ +.++++|+++.
T Consensus 63 gdfVV~GCy~g~lYfl~~~tGs~--------~w~f~~~~~v--k~-~a~~d~~~glIycgshd------~~~yalD~~~~ 125 (354)
T KOG4649|consen 63 GDFVVLGCYSGGLYFLCVKTGSQ--------IWNFVILETV--KV-RAQCDFDGGLIYCGSHD------GNFYALDPKTY 125 (354)
T ss_pred CCEEEEEEccCcEEEEEecchhh--------eeeeeehhhh--cc-ceEEcCCCceEEEecCC------CcEEEeccccc
Confidence 44444455678899998877741 1211 00100 11 12457766777777653 45788899875
Q ss_pred cEEEEEecCCCCCCCCCccceEECC-CCcEEEEeCCCCeEEEEcCC
Q 020019 135 NRLFLTQLSGPSDGKSCADDVTVDA-EGNAYVTDVTGSKIWKVGVK 179 (332)
Q Consensus 135 ~~~~~~~l~~~~~~~~~~ndiavd~-dG~lyvtd~~~~~I~~v~~~ 179 (332)
.-+...+. +..-.-.-++++ +|.||++-. .|+|.+++++
T Consensus 126 ~cVykskc-----gG~~f~sP~i~~g~~sly~a~t-~G~vlavt~~ 165 (354)
T KOG4649|consen 126 GCVYKSKC-----GGGTFVSPVIAPGDGSLYAAIT-AGAVLAVTKN 165 (354)
T ss_pred ceEEeccc-----CCceeccceecCCCceEEEEec-cceEEEEccC
Confidence 54433332 123344567788 688999864 5888888876
|
|
| >PHA02790 Kelch-like protein; Provisional | Back alignment and domain information |
|---|
Probab=91.93 E-value=14 Score=36.40 Aligned_cols=177 Identities=10% Similarity=0.033 Sum_probs=83.3
Q ss_pred CeEEEEEeCcCCCccceEEEEECCCCcEEEEEecCCCCCCCCCccceEECCCCcEEEEeCC--CCeEEEEcCCCceEEEe
Q 020019 109 NRLLVVAADVFGNKYSAVAAYDLSTWNRLFLTQLSGPSDGKSCADDVTVDAEGNAYVTDVT--GSKIWKVGVKGEFLSII 186 (332)
Q Consensus 109 g~l~v~~~~~~~~~~~~l~~~d~~~g~~~~~~~l~~~~~~~~~~ndiavd~dG~lyvtd~~--~~~I~~v~~~g~~~~~~ 186 (332)
+.+|++.+.........+..||+.+++......++ ..+.+..++.-+|.||+.-.. ...+.++++... .|.
T Consensus 272 ~~lyviGG~~~~~~~~~v~~Ydp~~~~W~~~~~m~-----~~r~~~~~v~~~~~iYviGG~~~~~sve~ydp~~n--~W~ 344 (480)
T PHA02790 272 EVVYLIGGWMNNEIHNNAIAVNYISNNWIPIPPMN-----SPRLYASGVPANNKLYVVGGLPNPTSVERWFHGDA--AWV 344 (480)
T ss_pred CEEEEEcCCCCCCcCCeEEEEECCCCEEEECCCCC-----chhhcceEEEECCEEEEECCcCCCCceEEEECCCC--eEE
Confidence 78888854211112346788999876643332332 122222223335789986432 245777776522 222
Q ss_pred cCCCCCCcccccCccccCeEEEccCceEEEEeCC---CCeEEEEeCCCCCCccceeEEEEecCCCCCCCCeEEEeCCCeE
Q 020019 187 SSPLFTPKEWYKNLVGLNGIVYHPDGFLIVIHTF---SGNLFKIDIVDGVGEGEEIKLIRVAGGPLSFGDGLELLSPTKL 263 (332)
Q Consensus 187 ~~~~~~~p~~~~~~~~~nGi~~~~dG~Lyva~~~---~~~i~~id~~~~~~~~~~~~~v~~~g~~~~~pdGi~~~~dG~l 263 (332)
..+.+..| ..+....++ +|.||+.-.. ...+.++|+.+. .=+.+... +.+.....+..-+|+|
T Consensus 345 ~~~~l~~~-----r~~~~~~~~--~g~IYviGG~~~~~~~ve~ydp~~~-----~W~~~~~m--~~~r~~~~~~~~~~~I 410 (480)
T PHA02790 345 NMPSLLKP-----RCNPAVASI--NNVIYVIGGHSETDTTTEYLLPNHD-----QWQFGPST--YYPHYKSCALVFGRRL 410 (480)
T ss_pred ECCCCCCC-----CcccEEEEE--CCEEEEecCcCCCCccEEEEeCCCC-----EEEeCCCC--CCccccceEEEECCEE
Confidence 22222222 122223333 6799987432 245667887754 11111110 1111122223346899
Q ss_pred EEEeCCceEEEEc-CCCceEEEEEeeecCCCcccceEEEEECCeEEEEEe
Q 020019 264 VVAGNPSARLVES-SDGWETAAVVAKFSGPVHRLATAATVKDGRVYLNHM 312 (332)
Q Consensus 264 ~va~~~~~~~v~~-~dg~~~~~~~~~~~~~~~~~pt~va~~~g~lyv~~~ 312 (332)
||.+...-+ ... .+-|.. ...+..+ +.-.++++-+|+|||...
T Consensus 411 Yv~GG~~e~-ydp~~~~W~~---~~~m~~~--r~~~~~~v~~~~IYviGG 454 (480)
T PHA02790 411 FLVGRNAEF-YCESSNTWTL---IDDPIYP--RDNPELIIVDNKLLLIGG 454 (480)
T ss_pred EEECCceEE-ecCCCCcEeE---cCCCCCC--ccccEEEEECCEEEEECC
Confidence 999753222 222 223432 1222112 222345668999999544
|
|
| >PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A | Back alignment and domain information |
|---|
Probab=91.91 E-value=3.1 Score=39.38 Aligned_cols=121 Identities=16% Similarity=0.144 Sum_probs=55.5
Q ss_pred EEECCCCcEEEEEecCCCCC-C-CCCccceEECCCCc--EEEEeCC-CCeEEEEcCCC-ceEEEecCCCCCCcccccCcc
Q 020019 128 AYDLSTWNRLFLTQLSGPSD-G-KSCADDVTVDAEGN--AYVTDVT-GSKIWKVGVKG-EFLSIISSPLFTPKEWYKNLV 201 (332)
Q Consensus 128 ~~d~~~g~~~~~~~l~~~~~-~-~~~~ndiavd~dG~--lyvtd~~-~~~I~~v~~~g-~~~~~~~~~~~~~p~~~~~~~ 201 (332)
..|+.||..+. +|..+.. . ..+.+.=++.+||+ ||.++.. ...+|.+|.+. +..++-..+. .
T Consensus 14 ~~D~~TG~~Vt--rLT~~~~~~h~~YF~~~~ft~dG~kllF~s~~dg~~nly~lDL~t~~i~QLTdg~g----------~ 81 (386)
T PF14583_consen 14 WIDPDTGHRVT--RLTPPDGHSHRLYFYQNCFTDDGRKLLFASDFDGNRNLYLLDLATGEITQLTDGPG----------D 81 (386)
T ss_dssp EE-TTT--EEE--E-S-TTS-EE---TTS--B-TTS-EEEEEE-TTSS-EEEEEETTT-EEEE---SS-----------B
T ss_pred EeCCCCCceEE--EecCCCCcccceeecCCCcCCCCCEEEEEeccCCCcceEEEEcccCEEEECccCCC----------C
Confidence 35888886553 3432111 1 14566677788885 4556643 45799999874 4444322110 1
Q ss_pred ccCeEEEccCc-eEEEEeCCCCeEEEEeCCCCCCccceeEEEEecCCCCCCCCeEEEeCCCeEEEE
Q 020019 202 GLNGIVYHPDG-FLIVIHTFSGNLFKIDIVDGVGEGEEIKLIRVAGGPLSFGDGLELLSPTKLVVA 266 (332)
Q Consensus 202 ~~nGi~~~~dG-~Lyva~~~~~~i~~id~~~~~~~~~~~~~v~~~g~~~~~pdGi~~~~dG~l~va 266 (332)
...|..++++. .||+.. ...+|+++++++.+ ......++ .....-.....++|+++++.
T Consensus 82 ~~~g~~~s~~~~~~~Yv~-~~~~l~~vdL~T~e----~~~vy~~p-~~~~g~gt~v~n~d~t~~~g 141 (386)
T PF14583_consen 82 NTFGGFLSPDDRALYYVK-NGRSLRRVDLDTLE----ERVVYEVP-DDWKGYGTWVANSDCTKLVG 141 (386)
T ss_dssp -TTT-EE-TTSSEEEEEE-TTTEEEEEETTT------EEEEEE---TTEEEEEEEEE-TTSSEEEE
T ss_pred CccceEEecCCCeEEEEE-CCCeEEEEECCcCc----EEEEEECC-cccccccceeeCCCccEEEE
Confidence 22367788888 776543 44689999999872 23333444 23222223345677777765
|
|
| >KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=91.62 E-value=13 Score=35.73 Aligned_cols=181 Identities=13% Similarity=0.134 Sum_probs=102.9
Q ss_pred cceEEcCCCCEEEEEecCCe-EEEEECCCCCCCccceeeeEEecccCcCCCccceEEEeCCCCeEEEEEeCcCCCccceE
Q 020019 48 ECAKWDDSGRRFIVSFLDGG-IGQVAVPDDYPPGTVLEEVTLVKDLELTGNGSLGLVLDHPRNRLLVVAADVFGNKYSAV 126 (332)
Q Consensus 48 egia~d~~g~~~~~~~~~g~-I~~vd~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~vd~~~g~l~v~~~~~~~~~~~~l 126 (332)
+-+-+.++++..+++..++. +..+|..+.. + + .++.... ..+....+.|.++.+.++... .+.+
T Consensus 114 ~~~~f~~~d~t~l~s~sDd~v~k~~d~s~a~----v-~-~~l~~ht----DYVR~g~~~~~~~hivvtGsY-----Dg~v 178 (487)
T KOG0310|consen 114 HVTKFSPQDNTMLVSGSDDKVVKYWDLSTAY----V-Q-AELSGHT----DYVRCGDISPANDHIVVTGSY-----DGKV 178 (487)
T ss_pred eEEEecccCCeEEEecCCCceEEEEEcCCcE----E-E-EEecCCc----ceeEeeccccCCCeEEEecCC-----CceE
Confidence 44668888887777744444 5555554332 1 1 1222111 256677778876666665433 3578
Q ss_pred EEEECCCCcEEEEEecCCCCCCCCCccceEECCCCcEEEEeCCCCeEEEEcC--CCceEEEecCCCCCCcccccCccccC
Q 020019 127 AAYDLSTWNRLFLTQLSGPSDGKSCADDVTVDAEGNAYVTDVTGSKIWKVGV--KGEFLSIISSPLFTPKEWYKNLVGLN 204 (332)
Q Consensus 127 ~~~d~~~g~~~~~~~l~~~~~~~~~~ndiavd~dG~lyvtd~~~~~I~~v~~--~g~~~~~~~~~~~~~p~~~~~~~~~n 204 (332)
..||.++.. .+..+++. ......+..-|.|.++++..+ +.|-.+|. .|+......+ .....+
T Consensus 179 rl~DtR~~~-~~v~elnh----g~pVe~vl~lpsgs~iasAgG-n~vkVWDl~~G~qll~~~~~----------H~KtVT 242 (487)
T KOG0310|consen 179 RLWDTRSLT-SRVVELNH----GCPVESVLALPSGSLIASAGG-NSVKVWDLTTGGQLLTSMFN----------HNKTVT 242 (487)
T ss_pred EEEEeccCC-ceeEEecC----CCceeeEEEcCCCCEEEEcCC-CeEEEEEecCCceehhhhhc----------ccceEE
Confidence 889998764 33344531 122335667788888888654 44444453 4443321111 122457
Q ss_pred eEEEccCc-eEEEEeCCCCeEEEEeCCCCCCccceeEEEEecCCCCCCCCeEEEeCCCeEEEEeC
Q 020019 205 GIVYHPDG-FLIVIHTFSGNLFKIDIVDGVGEGEEIKLIRVAGGPLSFGDGLELLSPTKLVVAGN 268 (332)
Q Consensus 205 Gi~~~~dG-~Lyva~~~~~~i~~id~~~~~~~~~~~~~v~~~g~~~~~pdGi~~~~dG~l~va~~ 268 (332)
.+++..++ .|+-+ ...+.+-.|+..+- +.+..+..++ + .=.|++.+|+.-.|++.
T Consensus 243 cL~l~s~~~rLlS~-sLD~~VKVfd~t~~----Kvv~s~~~~~-p---vLsiavs~dd~t~viGm 298 (487)
T KOG0310|consen 243 CLRLASDSTRLLSG-SLDRHVKVFDTTNY----KVVHSWKYPG-P---VLSIAVSPDDQTVVIGM 298 (487)
T ss_pred EEEeecCCceEeec-ccccceEEEEccce----EEEEeeeccc-c---eeeEEecCCCceEEEec
Confidence 89999999 66654 55666777776554 2455555553 2 23578888877666653
|
|
| >KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=91.56 E-value=2.4 Score=39.32 Aligned_cols=142 Identities=12% Similarity=0.190 Sum_probs=89.6
Q ss_pred ceEEEeCCCCeEEEEEeCcCCCccceEEEEECCCCcEEEEEecCCCCCCCCCccceEECCCCcEEEEeCCCCeEEEEcCC
Q 020019 100 LGLVLDHPRNRLLVVAADVFGNKYSAVAAYDLSTWNRLFLTQLSGPSDGKSCADDVTVDAEGNAYVTDVTGSKIWKVGVK 179 (332)
Q Consensus 100 ~gi~vd~~~g~l~v~~~~~~~~~~~~l~~~d~~~g~~~~~~~l~~~~~~~~~~ndiavd~dG~lyvtd~~~~~I~~v~~~ 179 (332)
..+.++|-.-.+..+.. ....|..||.+.++++..+.+ ...+|.|++.|++..|++......+|.+|..
T Consensus 191 ~svkfNpvETsILas~~-----sDrsIvLyD~R~~~Pl~KVi~------~mRTN~IswnPeafnF~~a~ED~nlY~~DmR 259 (433)
T KOG0268|consen 191 SSVKFNPVETSILASCA-----SDRSIVLYDLRQASPLKKVIL------TMRTNTICWNPEAFNFVAANEDHNLYTYDMR 259 (433)
T ss_pred eEEecCCCcchheeeec-----cCCceEEEecccCCccceeee------eccccceecCccccceeeccccccceehhhh
Confidence 45566664333444432 234688999998887766554 3688999999988788888888899999875
Q ss_pred Cc--eEEEecCCCCCCcccccCccccCeEEEccCceEEEEeCCCCeEEEEeCCCCCCccceeEEEEecCCCCCCCCeEEE
Q 020019 180 GE--FLSIISSPLFTPKEWYKNLVGLNGIVYHPDGFLIVIHTFSGNLFKIDIVDGVGEGEEIKLIRVAGGPLSFGDGLEL 257 (332)
Q Consensus 180 g~--~~~~~~~~~~~~p~~~~~~~~~nGi~~~~dG~Lyva~~~~~~i~~id~~~~~~~~~~~~~v~~~g~~~~~pdGi~~ 257 (332)
-- .+.+..+ .......+.|+|-|.=+|+-+....|.-+....+.+ ..+-.. .-+...-++..
T Consensus 260 ~l~~p~~v~~d----------hvsAV~dVdfsptG~EfvsgsyDksIRIf~~~~~~S-----RdiYht-kRMq~V~~Vk~ 323 (433)
T KOG0268|consen 260 NLSRPLNVHKD----------HVSAVMDVDFSPTGQEFVSGSYDKSIRIFPVNHGHS-----RDIYHT-KRMQHVFCVKY 323 (433)
T ss_pred hhcccchhhcc----------cceeEEEeccCCCcchhccccccceEEEeecCCCcc-----hhhhhH-hhhheeeEEEE
Confidence 21 1111111 112345789999997777777777776666554422 111111 23344557778
Q ss_pred eCCCeEEEEeC
Q 020019 258 LSPTKLVVAGN 268 (332)
Q Consensus 258 ~~dG~l~va~~ 268 (332)
..|.+..+++.
T Consensus 324 S~Dskyi~SGS 334 (433)
T KOG0268|consen 324 SMDSKYIISGS 334 (433)
T ss_pred eccccEEEecC
Confidence 88878777763
|
|
| >KOG0294 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=91.47 E-value=11 Score=34.49 Aligned_cols=176 Identities=14% Similarity=0.201 Sum_probs=97.0
Q ss_pred cceEEcCCCCEEEEE-ecCCeEEEEECCCCCCCccceeeeEEecccCcCCCccceEEEeCCCC--eEEEEEeCcCCCccc
Q 020019 48 ECAKWDDSGRRFIVS-FLDGGIGQVAVPDDYPPGTVLEEVTLVKDLELTGNGSLGLVLDHPRN--RLLVVAADVFGNKYS 124 (332)
Q Consensus 48 egia~d~~g~~~~~~-~~~g~I~~vd~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~vd~~~g--~l~v~~~~~~~~~~~ 124 (332)
..+|++ | .|+++ ..+-+|..+|...... .. .+....+ ..+.+.+.+..- .|.-+.. .+
T Consensus 47 tavAVs--~-~~~aSGssDetI~IYDm~k~~q----lg--~ll~Hag----sitaL~F~~~~S~shLlS~sd------DG 107 (362)
T KOG0294|consen 47 TALAVS--G-PYVASGSSDETIHIYDMRKRKQ----LG--ILLSHAG----SITALKFYPPLSKSHLLSGSD------DG 107 (362)
T ss_pred eEEEec--c-eeEeccCCCCcEEEEeccchhh----hc--ceecccc----ceEEEEecCCcchhheeeecC------CC
Confidence 445665 3 46555 6677899999765441 11 2332211 456677776421 4444432 45
Q ss_pred eEEEEECCCCcEEEEEecCCCCCCCCCccceEECCCCcEEEEeCCCCeEEEEcC-CCceEEEecCCCCCCcccccCcccc
Q 020019 125 AVAAYDLSTWNRLFLTQLSGPSDGKSCADDVTVDAEGNAYVTDVTGSKIWKVGV-KGEFLSIISSPLFTPKEWYKNLVGL 203 (332)
Q Consensus 125 ~l~~~d~~~g~~~~~~~l~~~~~~~~~~ndiavd~dG~lyvtd~~~~~I~~v~~-~g~~~~~~~~~~~~~p~~~~~~~~~ 203 (332)
.|.+|+..+.+.. -.+.+ . ....||+++.|.|.|-++-.+.+.+.-.+. .|+.....+-. ..+
T Consensus 108 ~i~iw~~~~W~~~--~slK~-H--~~~Vt~lsiHPS~KLALsVg~D~~lr~WNLV~Gr~a~v~~L~-----------~~a 171 (362)
T KOG0294|consen 108 HIIIWRVGSWELL--KSLKA-H--KGQVTDLSIHPSGKLALSVGGDQVLRTWNLVRGRVAFVLNLK-----------NKA 171 (362)
T ss_pred cEEEEEcCCeEEe--eeecc-c--ccccceeEecCCCceEEEEcCCceeeeehhhcCccceeeccC-----------Ccc
Confidence 7889998664333 23321 1 244999999999999988777776666663 34433222111 123
Q ss_pred CeEEEccCc-eEEEEeCCCCeEEEEeCCCCCCccceeEEEEecCCCCCCCCeEEEeCCCeEEEEeC
Q 020019 204 NGIVYHPDG-FLIVIHTFSGNLFKIDIVDGVGEGEEIKLIRVAGGPLSFGDGLELLSPTKLVVAGN 268 (332)
Q Consensus 204 nGi~~~~dG-~Lyva~~~~~~i~~id~~~~~~~~~~~~~v~~~g~~~~~pdGi~~~~dG~l~va~~ 268 (332)
.-|.|+|.| +.++.- .++|-.+.+++.+ ...++..+ ..+-.+.+...+.|+|...
T Consensus 172 t~v~w~~~Gd~F~v~~--~~~i~i~q~d~A~----v~~~i~~~----~r~l~~~~l~~~~L~vG~d 227 (362)
T KOG0294|consen 172 TLVSWSPQGDHFVVSG--RNKIDIYQLDNAS----VFREIENP----KRILCATFLDGSELLVGGD 227 (362)
T ss_pred eeeEEcCCCCEEEEEe--ccEEEEEecccHh----Hhhhhhcc----ccceeeeecCCceEEEecC
Confidence 458999999 666654 3445444444321 12222221 2334455555666777753
|
|
| >KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=91.46 E-value=12 Score=35.41 Aligned_cols=183 Identities=11% Similarity=0.182 Sum_probs=95.2
Q ss_pred ceEEcCCCCEEEEEecCCeEEEEE-CCCCCCCccceeeeEEecccCcCCCccceEEEeCCCCeEEEEEeCcCCCccceEE
Q 020019 49 CAKWDDSGRRFIVSFLDGGIGQVA-VPDDYPPGTVLEEVTLVKDLELTGNGSLGLVLDHPRNRLLVVAADVFGNKYSAVA 127 (332)
Q Consensus 49 gia~d~~g~~~~~~~~~g~I~~vd-~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~vd~~~g~l~v~~~~~~~~~~~~l~ 127 (332)
-+++..+|+.+-+.-.+|.+..++ |...+ ....+. .+.....|.+.+| |.+.+.... . ...
T Consensus 149 ~vaf~~~gs~latgg~dg~lRv~~~Ps~~t----------~l~e~~-~~~eV~DL~FS~d-gk~lasig~-----d-~~~ 210 (398)
T KOG0771|consen 149 VVAFNGDGSKLATGGTDGTLRVWEWPSMLT----------ILEEIA-HHAEVKDLDFSPD-GKFLASIGA-----D-SAR 210 (398)
T ss_pred EEEEcCCCCEeeeccccceEEEEecCcchh----------hhhhHh-hcCccccceeCCC-CcEEEEecC-----C-ceE
Confidence 366777776665554567666666 54222 111111 1235788999997 887776642 2 567
Q ss_pred EEECCCCcEEEEEecCCCCCCCCCccceEECCCC---cEEEEeCC--CCeEEEEcCCCceEEEecCCCCCCcccccCccc
Q 020019 128 AYDLSTWNRLFLTQLSGPSDGKSCADDVTVDAEG---NAYVTDVT--GSKIWKVGVKGEFLSIISSPLFTPKEWYKNLVG 202 (332)
Q Consensus 128 ~~d~~~g~~~~~~~l~~~~~~~~~~ndiavd~dG---~lyvtd~~--~~~I~~v~~~g~~~~~~~~~~~~~p~~~~~~~~ 202 (332)
+|+.++|....+.. |.++.-...-+.+..|+ .+|+.... .+.|...+.. .+-.+..+........+..
T Consensus 211 VW~~~~g~~~a~~t---~~~k~~~~~~cRF~~d~~~~~l~laa~~~~~~~v~~~~~~----~w~~~~~l~~~~~~~~~~s 283 (398)
T KOG0771|consen 211 VWSVNTGAALARKT---PFSKDEMFSSCRFSVDNAQETLRLAASQFPGGGVRLCDIS----LWSGSNFLRLRKKIKRFKS 283 (398)
T ss_pred EEEeccCchhhhcC---CcccchhhhhceecccCCCceEEEEEecCCCCceeEEEee----eeccccccchhhhhhccCc
Confidence 89999884433221 11111222223333332 57766543 2333332211 1111100000000112335
Q ss_pred cCeEEEccCceEEEEeCCCCeEEEEeCCCCCCccceeEEEEecCCCCCCCCeEEEeCCCe
Q 020019 203 LNGIVYHPDGFLIVIHTFSGNLFKIDIVDGVGEGEEIKLIRVAGGPLSFGDGLELLSPTK 262 (332)
Q Consensus 203 ~nGi~~~~dG~Lyva~~~~~~i~~id~~~~~~~~~~~~~v~~~g~~~~~pdGi~~~~dG~ 262 (332)
...+++++||++...-+.+|.|..++..+- +..+.++- .+.....++++.||-+
T Consensus 284 iSsl~VS~dGkf~AlGT~dGsVai~~~~~l----q~~~~vk~--aH~~~VT~ltF~Pdsr 337 (398)
T KOG0771|consen 284 ISSLAVSDDGKFLALGTMDGSVAIYDAKSL----QRLQYVKE--AHLGFVTGLTFSPDSR 337 (398)
T ss_pred ceeEEEcCCCcEEEEeccCCcEEEEEecee----eeeEeehh--hheeeeeeEEEcCCcC
Confidence 678899999966655667888988887643 12333321 2445678899988744
|
|
| >KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=91.37 E-value=14 Score=37.57 Aligned_cols=155 Identities=17% Similarity=0.186 Sum_probs=88.2
Q ss_pred ceEEcCCCCEEEEEecCCeEEEEECCCCCCCccceeeeEEecccCcCCCccceEEEeCCCCeEEEEEeCcCCCccceEEE
Q 020019 49 CAKWDDSGRRFIVSFLDGGIGQVAVPDDYPPGTVLEEVTLVKDLELTGNGSLGLVLDHPRNRLLVVAADVFGNKYSAVAA 128 (332)
Q Consensus 49 gia~d~~g~~~~~~~~~g~I~~vd~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~vd~~~g~l~v~~~~~~~~~~~~l~~ 128 (332)
.+++++.|.++-+.-.++++-+||..++.. +. .+-..|+ -+..+.++++-++ |+...+. ..+.+.+
T Consensus 110 ~ma~~~~g~LlAtggaD~~v~VWdi~~~~~----th--~fkG~gG----vVssl~F~~~~~~-~lL~sg~---~D~~v~v 175 (775)
T KOG0319|consen 110 TMAFDPTGTLLATGGADGRVKVWDIKNGYC----TH--SFKGHGG----VVSSLLFHPHWNR-WLLASGA---TDGTVRV 175 (775)
T ss_pred EEEEcCCCceEEeccccceEEEEEeeCCEE----EE--EecCCCc----eEEEEEeCCccch-hheeecC---CCceEEE
Confidence 478899885444445678999999876642 22 3332233 3567888886444 3222221 2467889
Q ss_pred EECCCCcEEEEEecCCCCCCCCCccceEECCCCcEEEEeCCCCeEEEEcCCC-ceEEEecCCCCCCcccccCccccCeEE
Q 020019 129 YDLSTWNRLFLTQLSGPSDGKSCADDVTVDAEGNAYVTDVTGSKIWKVGVKG-EFLSIISSPLFTPKEWYKNLVGLNGIV 207 (332)
Q Consensus 129 ~d~~~g~~~~~~~l~~~~~~~~~~ndiavd~dG~lyvtd~~~~~I~~v~~~g-~~~~~~~~~~~~~p~~~~~~~~~nGi~ 207 (332)
||+++... ....+ ....+...++++.+|+.-.++-.....|+..|... +....+ |.++ ..-+++
T Consensus 176 wnl~~~~t-cl~~~---~~H~S~vtsL~~~~d~~~~ls~~RDkvi~vwd~~~~~~l~~l--p~ye---------~~E~vv 240 (775)
T KOG0319|consen 176 WNLNDKRT-CLHTM---ILHKSAVTSLAFSEDSLELLSVGRDKVIIVWDLVQYKKLKTL--PLYE---------SLESVV 240 (775)
T ss_pred EEcccCch-HHHHH---HhhhhheeeeeeccCCceEEEeccCcEEEEeehhhhhhhhee--chhh---------heeeEE
Confidence 99986543 00111 01134566788888887666666666777776531 111111 2221 223455
Q ss_pred EccC-----ceEEEEeCCCCeEEEEeCCCC
Q 020019 208 YHPD-----GFLIVIHTFSGNLFKIDIVDG 232 (332)
Q Consensus 208 ~~~d-----G~Lyva~~~~~~i~~id~~~~ 232 (332)
+-++ |.++++-..++.+..++.+++
T Consensus 241 ~l~~~~~~~~~~~~TaG~~g~~~~~d~es~ 270 (775)
T KOG0319|consen 241 RLREELGGKGEYIITAGGSGVVQYWDSESG 270 (775)
T ss_pred EechhcCCcceEEEEecCCceEEEEecccc
Confidence 5545 556666677887878888765
|
|
| >PF06739 SBBP: Beta-propeller repeat; InterPro: IPR010620 This family is related to IPR001680 from INTERPRO and is likely to also form a beta-propeller | Back alignment and domain information |
|---|
Probab=91.34 E-value=0.18 Score=30.93 Aligned_cols=21 Identities=38% Similarity=0.664 Sum_probs=17.7
Q ss_pred CCccceEECCCCcEEEEeCCC
Q 020019 150 SCADDVTVDAEGNAYVTDVTG 170 (332)
Q Consensus 150 ~~~ndiavd~dG~lyvtd~~~ 170 (332)
..+++|++|++|++||+-...
T Consensus 13 ~~~~~IavD~~GNiYv~G~T~ 33 (38)
T PF06739_consen 13 DYGNGIAVDSNGNIYVTGYTN 33 (38)
T ss_pred eeEEEEEECCCCCEEEEEeec
Confidence 568999999999999986543
|
SBBP stands for Seven Bladed Beta Propeller. |
| >KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=91.29 E-value=11 Score=34.24 Aligned_cols=94 Identities=9% Similarity=0.040 Sum_probs=55.7
Q ss_pred ceeEEEecCCc-cccceEEcCC-CCEEEEEecCCeEEEEECCC-CCCCccceeeeEEecccCcCCCccceEEEeCCCCeE
Q 020019 35 THVYHYHSSSF-FRECAKWDDS-GRRFIVSFLDGGIGQVAVPD-DYPPGTVLEEVTLVKDLELTGNGSLGLVLDHPRNRL 111 (332)
Q Consensus 35 ~~~i~~~~~~~-~pegia~d~~-g~~~~~~~~~g~I~~vd~~~-~~~~~~~~~~~~~~~~~~~~~~~~~gi~vd~~~g~l 111 (332)
-.++++..+.. ....++++|. ..++..+.++++|..++..+ +.+ ......+.+ ..+..++...+..++
T Consensus 17 ~kd~ev~~pP~DsIS~l~FSP~~~~~~~A~SWD~tVR~wevq~~g~~-----~~ka~~~~~----~PvL~v~WsddgskV 87 (347)
T KOG0647|consen 17 NKDYEVPNPPEDSISALAFSPQADNLLAAGSWDGTVRIWEVQNSGQL-----VPKAQQSHD----GPVLDVCWSDDGSKV 87 (347)
T ss_pred ccceecCCCcccchheeEeccccCceEEecccCCceEEEEEecCCcc-----cchhhhccC----CCeEEEEEccCCceE
Confidence 45677755433 5567999994 45555668888765555443 332 100111111 246788888875567
Q ss_pred EEEEeCcCCCccceEEEEECCCCcEEEEEecC
Q 020019 112 LVVAADVFGNKYSAVAAYDLSTWNRLFLTQLS 143 (332)
Q Consensus 112 ~v~~~~~~~~~~~~l~~~d~~~g~~~~~~~l~ 143 (332)
|....+ +.+..||+.++++.+.....
T Consensus 88 f~g~~D------k~~k~wDL~S~Q~~~v~~Hd 113 (347)
T KOG0647|consen 88 FSGGCD------KQAKLWDLASGQVSQVAAHD 113 (347)
T ss_pred EeeccC------CceEEEEccCCCeeeeeecc
Confidence 776654 45677899999876654433
|
|
| >PF14269 Arylsulfotran_2: Arylsulfotransferase (ASST) | Back alignment and domain information |
|---|
Probab=91.04 E-value=12 Score=34.26 Aligned_cols=125 Identities=11% Similarity=0.096 Sum_probs=72.4
Q ss_pred ccceEEEeCCCCeEEEEEeCcCCCccceEEEEECCCCcEEEEEecCCC-C-------CCCCCccceEEC----CCCcEEE
Q 020019 98 GSLGLVLDHPRNRLLVVAADVFGNKYSAVAAYDLSTWNRLFLTQLSGP-S-------DGKSCADDVTVD----AEGNAYV 165 (332)
Q Consensus 98 ~~~gi~vd~~~g~l~v~~~~~~~~~~~~l~~~d~~~g~~~~~~~l~~~-~-------~~~~~~ndiavd----~dG~lyv 165 (332)
+.+.|..+++ |.++|+... ...|+++|.++|++++.. .++ . ..-..-+|..+- ++++|-+
T Consensus 145 HiNsV~~~~~-G~yLiS~R~-----~~~i~~I~~~tG~I~W~l--gG~~~~df~~~~~~f~~QHdar~~~~~~~~~~Isl 216 (299)
T PF14269_consen 145 HINSVDKDDD-GDYLISSRN-----TSTIYKIDPSTGKIIWRL--GGKRNSDFTLPATNFSWQHDARFLNESNDDGTISL 216 (299)
T ss_pred EeeeeeecCC-ccEEEEecc-----cCEEEEEECCCCcEEEEe--CCCCCCcccccCCcEeeccCCEEeccCCCCCEEEE
Confidence 5688988886 887777653 567999999999987654 222 0 001223444444 4455544
Q ss_pred EeC----------CCCeEEEEcCCCceEEEecCCCCCCcccccCccccCeEEEccCceEEEEeCCCCeEEEEeCCCC
Q 020019 166 TDV----------TGSKIWKVGVKGEFLSIISSPLFTPKEWYKNLVGLNGIVYHPDGFLIVIHTFSGNLFKIDIVDG 232 (332)
Q Consensus 166 td~----------~~~~I~~v~~~g~~~~~~~~~~~~~p~~~~~~~~~nGi~~~~dG~Lyva~~~~~~i~~id~~~~ 232 (332)
=|. ..+.|+.+|+..+...+...-. ..|..... ...-..-.-|+|+++|+....+++..++++..
T Consensus 217 FDN~~~~~~~~~~s~~~v~~ld~~~~~~~~~~~~~-~~~~~~~s-~~~G~~Q~L~nGn~li~~g~~g~~~E~~~~G~ 291 (299)
T PF14269_consen 217 FDNANSDFNGTEPSRGLVLELDPETMTVTLVREYS-DHPDGFYS-PSQGSAQRLPNGNVLIGWGNNGRISEFTPDGE 291 (299)
T ss_pred EcCCCCCCCCCcCCCceEEEEECCCCEEEEEEEee-cCCCcccc-cCCCcceECCCCCEEEecCCCceEEEECCCCC
Confidence 333 4578888998865443322100 00000000 01112334567889999999999999988743
|
|
| >KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=91.04 E-value=12 Score=34.23 Aligned_cols=190 Identities=12% Similarity=0.111 Sum_probs=102.0
Q ss_pred ccceEEcCCCCEEEEEecCCeEEEEECCCCCCCccceeeeEEec-ccCcCC-CccceEEEeCCCCeEEEEEeCcCCCccc
Q 020019 47 RECAKWDDSGRRFIVSFLDGGIGQVAVPDDYPPGTVLEEVTLVK-DLELTG-NGSLGLVLDHPRNRLLVVAADVFGNKYS 124 (332)
Q Consensus 47 pegia~d~~g~~~~~~~~~g~I~~vd~~~~~~~~~~~~~~~~~~-~~~~~~-~~~~gi~vd~~~g~l~v~~~~~~~~~~~ 124 (332)
...+.++|.|..+++......+..+|..+.+ .+.+ .|+... .+...+...+. ++|||... +.+
T Consensus 219 vrsiSfHPsGefllvgTdHp~~rlYdv~T~Q---------cfvsanPd~qht~ai~~V~Ys~t-~~lYvTaS-----kDG 283 (430)
T KOG0640|consen 219 VRSISFHPSGEFLLVGTDHPTLRLYDVNTYQ---------CFVSANPDDQHTGAITQVRYSST-GSLYVTAS-----KDG 283 (430)
T ss_pred eeeEeecCCCceEEEecCCCceeEEecccee---------EeeecCcccccccceeEEEecCC-ccEEEEec-----cCC
Confidence 3578999999988777656666666655443 2433 354332 25677888885 99999864 456
Q ss_pred eEEEEECCCCcEEEEEecCCCCCCCCCccceEECCCCcEEEEeCCCC---eEEEEcCCCceEEEecCCCCCCcccccCcc
Q 020019 125 AVAAYDLSTWNRLFLTQLSGPSDGKSCADDVTVDAEGNAYVTDVTGS---KIWKVGVKGEFLSIISSPLFTPKEWYKNLV 201 (332)
Q Consensus 125 ~l~~~d~~~g~~~~~~~l~~~~~~~~~~ndiavd~dG~lyvtd~~~~---~I~~v~~~g~~~~~~~~~~~~~p~~~~~~~ 201 (332)
.|..||.-+++-+..+.- .. +++-.-...+..+|. |+-.++.. .+|.+........+.+... ... +..
T Consensus 284 ~IklwDGVS~rCv~t~~~--AH-~gsevcSa~Ftkn~k-yiLsSG~DS~vkLWEi~t~R~l~~YtGAg~-tgr----q~~ 354 (430)
T KOG0640|consen 284 AIKLWDGVSNRCVRTIGN--AH-GGSEVCSAVFTKNGK-YILSSGKDSTVKLWEISTGRMLKEYTGAGT-TGR----QKH 354 (430)
T ss_pred cEEeeccccHHHHHHHHh--hc-CCceeeeEEEccCCe-EEeecCCcceeeeeeecCCceEEEEecCCc-ccc----hhh
Confidence 788899876653322221 11 123333456677775 44444433 3444544333333322211 000 111
Q ss_pred ccCeEEEccC-ceEEEEeCCCCeEEEEeCCCCCCccceeEEEEecCCCCCCCCeEEEeCCCeEEEEe
Q 020019 202 GLNGIVYHPD-GFLIVIHTFSGNLFKIDIVDGVGEGEEIKLIRVAGGPLSFGDGLELLSPTKLVVAG 267 (332)
Q Consensus 202 ~~nGi~~~~d-G~Lyva~~~~~~i~~id~~~~~~~~~~~~~v~~~g~~~~~pdGi~~~~dG~l~va~ 267 (332)
..+.+ |+.. .++..-|..++.+..+|..+. ..+....+. .-+.+.-+.-.|.+-.|++.
T Consensus 355 rtqAv-FNhtEdyVl~pDEas~slcsWdaRta----dr~~l~slg--Hn~a~R~i~HSP~~p~FmTc 414 (430)
T KOG0640|consen 355 RTQAV-FNHTEDYVLFPDEASNSLCSWDARTA----DRVALLSLG--HNGAVRWIVHSPVEPAFMTC 414 (430)
T ss_pred hhhhh-hcCccceEEccccccCceeeccccch----hhhhhcccC--CCCCceEEEeCCCCCceeee
Confidence 22222 3333 366666777888888887754 123222222 22334455555666666664
|
|
| >PF14339 DUF4394: Domain of unknown function (DUF4394) | Back alignment and domain information |
|---|
Probab=90.96 E-value=11 Score=33.32 Aligned_cols=174 Identities=14% Similarity=0.137 Sum_probs=97.5
Q ss_pred eEEEec--CCccccceEEcCCCCEEEEEecCCeEEEEECCCCCCCccceeeeEEe--c--ccCcCCCccceEEEeCCCCe
Q 020019 37 VYHYHS--SSFFRECAKWDDSGRRFIVSFLDGGIGQVAVPDDYPPGTVLEEVTLV--K--DLELTGNGSLGLVLDHPRNR 110 (332)
Q Consensus 37 ~i~~~~--~~~~pegia~d~~g~~~~~~~~~g~I~~vd~~~~~~~~~~~~~~~~~--~--~~~~~~~~~~gi~vd~~~g~ 110 (332)
...+.+ .+...-||.+.|....+|.-...++||.+++.++.. +.. . .+.+. ....|+-++|.-+|
T Consensus 17 ~~~vtGL~~ge~l~GID~Rpa~G~LYgl~~~g~lYtIn~~tG~a--------T~vg~s~~~~al~-g~~~gvDFNP~aDR 87 (236)
T PF14339_consen 17 SVAVTGLAAGESLVGIDFRPANGQLYGLGSTGRLYTINPATGAA--------TPVGASPLTVALS-GTAFGVDFNPAADR 87 (236)
T ss_pred cEEeecccCCCeEEEEEeecCCCCEEEEeCCCcEEEEECCCCeE--------EEeeccccccccc-CceEEEecCcccCc
Confidence 345555 344667899998855555555579999999998863 222 1 11122 23788999998899
Q ss_pred EEEEEeCcCCCccceEEEEECCCCcEEEEE-ecCCCC-C---C-CCCccceEECCC------C-cEEEEeCCCCeEEEEc
Q 020019 111 LLVVAADVFGNKYSAVAAYDLSTWNRLFLT-QLSGPS-D---G-KSCADDVTVDAE------G-NAYVTDVTGSKIWKVG 177 (332)
Q Consensus 111 l~v~~~~~~~~~~~~l~~~d~~~g~~~~~~-~l~~~~-~---~-~~~~ndiavd~d------G-~lyvtd~~~~~I~~v~ 177 (332)
|-|.... +.-+++++++|.+...- .+..+. + + ....-+.|.... . .+|--|...+++++.+
T Consensus 88 lRvvs~~------GqNlR~npdtGav~~~Dg~L~y~~gd~~~G~~p~v~aaAYTNs~~g~~t~TtLy~ID~~~~~Lv~Q~ 161 (236)
T PF14339_consen 88 LRVVSNT------GQNLRLNPDTGAVTIVDGNLAYAAGDMNAGTTPGVTAAAYTNSFAGATTSTTLYDIDTTLDALVTQN 161 (236)
T ss_pred EEEEccC------CcEEEECCCCCCceeccCccccCCCccccCCCCceEEEEEecccCCCccceEEEEEecCCCeEEEec
Confidence 9998653 33467888888743221 121111 0 0 111112222211 2 3677777777777774
Q ss_pred -CC-CceEEEecCCCCCCcccccCccccCeEEEccC---c-eEEEEeC-CCCeEEEEeCCCCC
Q 020019 178 -VK-GEFLSIISSPLFTPKEWYKNLVGLNGIVYHPD---G-FLIVIHT-FSGNLFKIDIVDGV 233 (332)
Q Consensus 178 -~~-g~~~~~~~~~~~~~p~~~~~~~~~nGi~~~~d---G-~Lyva~~-~~~~i~~id~~~~~ 233 (332)
|. |.+..+-.... ......|+.+.++ + ..|.... ...++|+||+.+++
T Consensus 162 ppN~GtL~~vG~LGv--------d~~~~~gFDI~~~~~~~~~a~a~~~~~~~~LY~vdL~TG~ 216 (236)
T PF14339_consen 162 PPNDGTLNTVGPLGV--------DAAGDAGFDIAGDGNGGNAAYAVLGVGGSGLYTVDLTTGA 216 (236)
T ss_pred CCCCCcEEeeecccc--------ccCcccceeeecCCCcceEEEEEecCCCcEEEEEECCCcc
Confidence 33 55443311100 1123456666641 2 4444432 23689999999884
|
|
| >KOG2096 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=90.91 E-value=13 Score=34.21 Aligned_cols=161 Identities=14% Similarity=0.162 Sum_probs=82.8
Q ss_pred cccceEEcCCCCEEEEEecCCeEEEEECCCCCCCccceeeeEEecccCcCCCccceEEEeCCCCeEEEEEeCcCCCccce
Q 020019 46 FRECAKWDDSGRRFIVSFLDGGIGQVAVPDDYPPGTVLEEVTLVKDLELTGNGSLGLVLDHPRNRLLVVAADVFGNKYSA 125 (332)
Q Consensus 46 ~pegia~d~~g~~~~~~~~~g~I~~vd~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~vd~~~g~l~v~~~~~~~~~~~~ 125 (332)
...+++++.||.-+.+...++.|..|+..+-+.. +.+.+-..... .+|.-+++.||-.-+.|.... .+.
T Consensus 88 ~vt~~~FsSdGK~lat~~~Dr~Ir~w~~~DF~~~----eHr~~R~nve~--dhpT~V~FapDc~s~vv~~~~-----g~~ 156 (420)
T KOG2096|consen 88 EVTDVAFSSDGKKLATISGDRSIRLWDVRDFENK----EHRCIRQNVEY--DHPTRVVFAPDCKSVVVSVKR-----GNK 156 (420)
T ss_pred ceeeeEEcCCCceeEEEeCCceEEEEecchhhhh----hhhHhhccccC--CCceEEEECCCcceEEEEEcc-----CCE
Confidence 3457899999987766677888888886653210 11111111122 267788888863333333332 245
Q ss_pred EEEEECCC---CcEE-EEE--e-cCCCCCCCCCccceEECCCCcEEEEeCCCCeEEEEcCCCceEEEecCCCCCCccccc
Q 020019 126 VAAYDLST---WNRL-FLT--Q-LSGPSDGKSCADDVTVDAEGNAYVTDVTGSKIWKVGVKGEFLSIISSPLFTPKEWYK 198 (332)
Q Consensus 126 l~~~d~~~---g~~~-~~~--~-l~~~~~~~~~~ndiavd~dG~lyvtd~~~~~I~~v~~~g~~~~~~~~~~~~~p~~~~ 198 (332)
|.+|.... |... ..+ + +.-+..-..-.-++-+..++..+.+.+....|...+..|+.+..++..
T Consensus 157 l~vyk~~K~~dG~~~~~~v~~D~~~f~~kh~v~~i~iGiA~~~k~imsas~dt~i~lw~lkGq~L~~idtn--------- 227 (420)
T KOG2096|consen 157 LCVYKLVKKTDGSGSHHFVHIDNLEFERKHQVDIINIGIAGNAKYIMSASLDTKICLWDLKGQLLQSIDTN--------- 227 (420)
T ss_pred EEEEEeeecccCCCCcccccccccccchhcccceEEEeecCCceEEEEecCCCcEEEEecCCceeeeeccc---------
Confidence 66664421 2211 011 1 100111011122244433344455667777888888888877655432
Q ss_pred CccccCeEEEccCceEEEEeCCCC--eEEEE
Q 020019 199 NLVGLNGIVYHPDGFLIVIHTFSG--NLFKI 227 (332)
Q Consensus 199 ~~~~~nGi~~~~dG~Lyva~~~~~--~i~~i 227 (332)
+..-..-+++|+|+...+...+- ++|.+
T Consensus 228 -q~~n~~aavSP~GRFia~~gFTpDVkVwE~ 257 (420)
T KOG2096|consen 228 -QSSNYDAAVSPDGRFIAVSGFTPDVKVWEP 257 (420)
T ss_pred -cccccceeeCCCCcEEEEecCCCCceEEEE
Confidence 22344678999994444444444 44443
|
|
| >COG5276 Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=90.76 E-value=13 Score=33.95 Aligned_cols=160 Identities=17% Similarity=0.185 Sum_probs=85.4
Q ss_pred CCccceEECCCCcEEEEeCCCCe-EEEEcCCCceEEEecCCCCCCcccccCccccCeEEEccCc-eEEEEeCCCCeEEEE
Q 020019 150 SCADDVTVDAEGNAYVTDVTGSK-IWKVGVKGEFLSIISSPLFTPKEWYKNLVGLNGIVYHPDG-FLIVIHTFSGNLFKI 227 (332)
Q Consensus 150 ~~~ndiavd~dG~lyvtd~~~~~-I~~v~~~g~~~~~~~~~~~~~p~~~~~~~~~nGi~~~~dG-~Lyva~~~~~~i~~i 227 (332)
...+|+.+..+ -+|++|+.+|- |+-+..-.+.... .. +. ......|+.++ | ++||++...+ +..+
T Consensus 87 ~l~~Dv~vse~-yvyvad~ssGL~IvDIS~P~sP~~~-~~--ln------t~gyaygv~vs--Gn~aYVadlddg-fLiv 153 (370)
T COG5276 87 DLFADVRVSEE-YVYVADWSSGLRIVDISTPDSPTLI-GF--LN------TDGYAYGVYVS--GNYAYVADLDDG-FLIV 153 (370)
T ss_pred hhhheeEeccc-EEEEEcCCCceEEEeccCCCCccee-cc--cc------CCceEEEEEec--CCEEEEeeccCc-EEEE
Confidence 45677888765 59999987664 3333322232211 00 00 01223455564 6 9999998766 6678
Q ss_pred eCCCCCCccceeEEEEecCCCCCCCCeEEEeCCCeEEEEe-CCceEEEEcCCCceEEEEEeeecCCCcccceEEEEECCe
Q 020019 228 DIVDGVGEGEEIKLIRVAGGPLSFGDGLELLSPTKLVVAG-NPSARLVESSDGWETAAVVAKFSGPVHRLATAATVKDGR 306 (332)
Q Consensus 228 d~~~~~~~~~~~~~v~~~g~~~~~pdGi~~~~dG~l~va~-~~~~~~v~~~dg~~~~~~~~~~~~~~~~~pt~va~~~g~ 306 (332)
|..+++. .+..-+...++ .-...+++. .+.-|++. +++..++...+. ..-++++..... ....++.+.+++
T Consensus 154 dvsdpss-P~lagrya~~~---~d~~~v~IS-Gn~AYvA~~d~GL~ivDVSnp-~sPvli~~~n~g--~g~~sv~vsdnr 225 (370)
T COG5276 154 DVSDPSS-PQLAGRYALPG---GDTHDVAIS-GNYAYVAWRDGGLTIVDVSNP-HSPVLIGSYNTG--PGTYSVSVSDNR 225 (370)
T ss_pred ECCCCCC-ceeeeeeccCC---CCceeEEEe-cCeEEEEEeCCCeEEEEccCC-CCCeEEEEEecC--CceEEEEecCCe
Confidence 8886631 01111122211 111245554 45789995 445566665554 333455543311 012345557888
Q ss_pred EEE----EEecCccccCCccceeeeeec
Q 020019 307 VYL----NHMLGFGYPKKKHALVEAVFS 330 (332)
Q Consensus 307 lyv----~~~~g~~~~~~~~~~~~~~~~ 330 (332)
.|+ ..-+-.+++..++|+.-..|.
T Consensus 226 ~y~vvy~egvlivd~s~~ssp~~~gsye 253 (370)
T COG5276 226 AYLVVYDEGVLIVDVSGPSSPTVFGSYE 253 (370)
T ss_pred eEEEEcccceEEEecCCCCCceEeeccc
Confidence 886 345556677777777766654
|
|
| >KOG2321 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=90.73 E-value=14 Score=36.48 Aligned_cols=176 Identities=9% Similarity=0.125 Sum_probs=94.1
Q ss_pred CCEEEEEecCCeEEEEECCCCCCCccceeeeEEecccCcCCCccceEEEeCCCCeEEEEEeCcCCCccceEEEEECCCCc
Q 020019 56 GRRFIVSFLDGGIGQVAVPDDYPPGTVLEEVTLVKDLELTGNGSLGLVLDHPRNRLLVVAADVFGNKYSAVAAYDLSTWN 135 (332)
Q Consensus 56 g~~~~~~~~~g~I~~vd~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~vd~~~g~l~v~~~~~~~~~~~~l~~~d~~~g~ 135 (332)
..+|++.. ...|||+.+..|.+ +. .+. ....+.+.+.+.+- +.|++|.. ..+.+-.||+++..
T Consensus 146 cDly~~gs-g~evYRlNLEqGrf----L~--P~~----~~~~~lN~v~in~~-hgLla~Gt-----~~g~VEfwDpR~ks 208 (703)
T KOG2321|consen 146 CDLYLVGS-GSEVYRLNLEQGRF----LN--PFE----TDSGELNVVSINEE-HGLLACGT-----EDGVVEFWDPRDKS 208 (703)
T ss_pred ccEEEeec-CcceEEEEcccccc----cc--ccc----cccccceeeeecCc-cceEEecc-----cCceEEEecchhhh
Confidence 44554443 46799999988863 22 121 11125677888886 55666654 24678889998765
Q ss_pred EEEEEecCC-----CCC-CCCCccceEECCCCcEEEEeCCCCeEEEEcCCCceEEEecCCCCCCcccccCccccCeEEEc
Q 020019 136 RLFLTQLSG-----PSD-GKSCADDVTVDAEGNAYVTDVTGSKIWKVGVKGEFLSIISSPLFTPKEWYKNLVGLNGIVYH 209 (332)
Q Consensus 136 ~~~~~~l~~-----~~~-~~~~~ndiavd~dG~lyvtd~~~~~I~~v~~~g~~~~~~~~~~~~~p~~~~~~~~~nGi~~~ 209 (332)
......... |+. ....+..+.+..+|--.-.-+..|.|+.+|...+...+..+..+..| ..-|.|-
T Consensus 209 rv~~l~~~~~v~s~pg~~~~~svTal~F~d~gL~~aVGts~G~v~iyDLRa~~pl~~kdh~~e~p--------i~~l~~~ 280 (703)
T KOG2321|consen 209 RVGTLDAASSVNSHPGGDAAPSVTALKFRDDGLHVAVGTSTGSVLIYDLRASKPLLVKDHGYELP--------IKKLDWQ 280 (703)
T ss_pred hheeeecccccCCCccccccCcceEEEecCCceeEEeeccCCcEEEEEcccCCceeecccCCccc--------eeeeccc
Confidence 444333311 121 12457778888887323334567899999876543333323233222 1233332
Q ss_pred cC--c-eEEEEeCCCCeEEE-EeCCCCCCccceeEEEEecCCCCCCCCeEEEeCC-CeEEEEe
Q 020019 210 PD--G-FLIVIHTFSGNLFK-IDIVDGVGEGEEIKLIRVAGGPLSFGDGLELLSP-TKLVVAG 267 (332)
Q Consensus 210 ~d--G-~Lyva~~~~~~i~~-id~~~~~~~~~~~~~v~~~g~~~~~pdGi~~~~d-G~l~va~ 267 (332)
+. + .|+-.+. ++.| ++..+|+ ....+. +......+|+-++ |-+++++
T Consensus 281 ~~~~q~~v~S~Dk---~~~kiWd~~~Gk----~~asiE----pt~~lND~C~~p~sGm~f~An 332 (703)
T KOG2321|consen 281 DTDQQNKVVSMDK---RILKIWDECTGK----PMASIE----PTSDLNDFCFVPGSGMFFTAN 332 (703)
T ss_pred ccCCCceEEecch---HHhhhcccccCC----ceeecc----ccCCcCceeeecCCceEEEec
Confidence 22 3 5554443 3444 3455663 222222 2233567888887 4445554
|
|
| >KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=90.60 E-value=14 Score=35.95 Aligned_cols=103 Identities=16% Similarity=0.172 Sum_probs=66.0
Q ss_pred eEECCCC-cEEEEeCCCCeEEEEcCCCceEEEecCCCCCCcccccCccccCeEEEccCc-eEEEEeCCCCeEEEEeCCCC
Q 020019 155 VTVDAEG-NAYVTDVTGSKIWKVGVKGEFLSIISSPLFTPKEWYKNLVGLNGIVYHPDG-FLIVIHTFSGNLFKIDIVDG 232 (332)
Q Consensus 155 iavd~dG-~lyvtd~~~~~I~~v~~~g~~~~~~~~~~~~~p~~~~~~~~~nGi~~~~dG-~Lyva~~~~~~i~~id~~~~ 232 (332)
+...+-- .+..+.+..|.|..+|..|+-..+.-...-.+ -..||||+|.. .|+|+-....+|+-+|....
T Consensus 170 l~ys~skr~lL~~asd~G~VtlwDv~g~sp~~~~~~~HsA--------P~~gicfspsne~l~vsVG~Dkki~~yD~~s~ 241 (673)
T KOG4378|consen 170 LRYSPSKRFLLSIASDKGAVTLWDVQGMSPIFHASEAHSA--------PCRGICFSPSNEALLVSVGYDKKINIYDIRSQ 241 (673)
T ss_pred eecccccceeeEeeccCCeEEEEeccCCCcccchhhhccC--------CcCcceecCCccceEEEecccceEEEeecccc
Confidence 3444543 36666777788888887776332211111112 24799999999 89999888999999998855
Q ss_pred CCccceeEEEEecCCCCCCCCeEEEeCCCeEEEEeCCceEE
Q 020019 233 VGEGEEIKLIRVAGGPLSFGDGLELLSPTKLVVAGNPSARL 273 (332)
Q Consensus 233 ~~~~~~~~~v~~~g~~~~~pdGi~~~~dG~l~va~~~~~~~ 273 (332)
. ....+... .++ ..+++.++|..+++++...++
T Consensus 242 ~----s~~~l~y~-~Pl---stvaf~~~G~~L~aG~s~G~~ 274 (673)
T KOG4378|consen 242 A----STDRLTYS-HPL---STVAFSECGTYLCAGNSKGEL 274 (673)
T ss_pred c----ccceeeec-CCc---ceeeecCCceEEEeecCCceE
Confidence 3 23334333 344 357888888888887654343
|
|
| >PF02191 OLF: Olfactomedin-like domain; InterPro: IPR003112 The olfactomedin-domain was first identified in olfactomedin, an extracellular matrix protein of the olfactory neuroepithelium [] | Back alignment and domain information |
|---|
Probab=90.51 E-value=12 Score=33.33 Aligned_cols=148 Identities=16% Similarity=0.139 Sum_probs=86.0
Q ss_pred CCCEEEEEecCCeEEEEECCCCCCCccceeeeEEecccCcCC--------CccceEEEeCCCCeEEEEEeCcCCCccceE
Q 020019 55 SGRRFIVSFLDGGIGQVAVPDDYPPGTVLEEVTLVKDLELTG--------NGSLGLVLDHPRNRLLVVAADVFGNKYSAV 126 (332)
Q Consensus 55 ~g~~~~~~~~~g~I~~vd~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~gi~vd~~~g~l~v~~~~~~~~~~~~l 126 (332)
+|.+||-.....+|.|+|..++.. ..+..+. ..+..+ ..-..+++|+. | |||.-......+.=.|
T Consensus 78 ngslYY~~~~s~~IvkydL~t~~v----~~~~~L~-~A~~~n~~~y~~~~~t~iD~AvDE~-G-LWvIYat~~~~g~ivv 150 (250)
T PF02191_consen 78 NGSLYYNKYNSRNIVKYDLTTRSV----VARRELP-GAGYNNRFPYYWSGYTDIDFAVDEN-G-LWVIYATEDNNGNIVV 150 (250)
T ss_pred CCcEEEEecCCceEEEEECcCCcE----EEEEECC-ccccccccceecCCCceEEEEEcCC-C-EEEEEecCCCCCcEEE
Confidence 467888777788999999987652 2221221 111111 12357889873 5 6888653221122346
Q ss_pred EEEECCCCcEEEEEecCCCCCCCCCccceEECCCCcEEEEeCCC---Ce-EEEEcCC-CceEEEecCCCCCCcccccCcc
Q 020019 127 AAYDLSTWNRLFLTQLSGPSDGKSCADDVTVDAEGNAYVTDVTG---SK-IWKVGVK-GEFLSIISSPLFTPKEWYKNLV 201 (332)
Q Consensus 127 ~~~d~~~g~~~~~~~l~~~~~~~~~~ndiavd~dG~lyvtd~~~---~~-I~~v~~~-g~~~~~~~~~~~~~p~~~~~~~ 201 (332)
.++|+++-+++..+...- ......|.+.+ .|-||++++.. .. -+.+|.. ++... .. -.|.. ...
T Consensus 151 skld~~tL~v~~tw~T~~--~k~~~~naFmv--CGvLY~~~s~~~~~~~I~yafDt~t~~~~~-~~-i~f~~-----~~~ 219 (250)
T PF02191_consen 151 SKLDPETLSVEQTWNTSY--PKRSAGNAFMV--CGVLYATDSYDTRDTEIFYAFDTYTGKEED-VS-IPFPN-----PYG 219 (250)
T ss_pred EeeCcccCceEEEEEecc--CchhhcceeeE--eeEEEEEEECCCCCcEEEEEEECCCCceec-ee-eeecc-----ccC
Confidence 678998888877776532 22344554444 58899998764 33 3567765 33221 11 11211 123
Q ss_pred ccCeEEEccCc-eEEEEeCC
Q 020019 202 GLNGIVYHPDG-FLIVIHTF 220 (332)
Q Consensus 202 ~~nGi~~~~dG-~Lyva~~~ 220 (332)
....|.++|.. .||+-|.+
T Consensus 220 ~~~~l~YNP~dk~LY~wd~G 239 (250)
T PF02191_consen 220 NISMLSYNPRDKKLYAWDNG 239 (250)
T ss_pred ceEeeeECCCCCeEEEEECC
Confidence 56789999988 99987653
|
Members of this extracellular domain-family have since been shown to be present in several metazoan proteins, such as latrophilins, myocilins, optimedins and noelins, the latter being involved in the generation of neural crest cells. Myocilin is of considerable interest, as mutations in its olfactomedin-domain can lead to glaucoma []. The olfactomedin-domains in myocilin and optimedin are essential for the interaction between these two proteins [].; GO: 0005515 protein binding |
| >KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=90.50 E-value=17 Score=35.00 Aligned_cols=156 Identities=14% Similarity=0.135 Sum_probs=88.7
Q ss_pred cccceEEcCCCCEEEEEecCCeEEEEECCCCCCCccc--e--eeeEEecccCcCCCccceEEEeCCCCeEEEEEeCcCCC
Q 020019 46 FRECAKWDDSGRRFIVSFLDGGIGQVAVPDDYPPGTV--L--EEVTLVKDLELTGNGSLGLVLDHPRNRLLVVAADVFGN 121 (332)
Q Consensus 46 ~pegia~d~~g~~~~~~~~~g~I~~vd~~~~~~~~~~--~--~~~~~~~~~~~~~~~~~gi~vd~~~g~l~v~~~~~~~~ 121 (332)
....+-|++.|.++.+...++++-.+.-.+...-.++ . +.++....|. ..+.-.+..|...+...
T Consensus 361 ~V~alk~n~tg~LLaS~SdD~TlkiWs~~~~~~~~~l~~Hskei~t~~wsp~------g~v~~n~~~~~~l~sas----- 429 (524)
T KOG0273|consen 361 EVNALKWNPTGSLLASCSDDGTLKIWSMGQSNSVHDLQAHSKEIYTIKWSPT------GPVTSNPNMNLMLASAS----- 429 (524)
T ss_pred ceEEEEECCCCceEEEecCCCeeEeeecCCCcchhhhhhhccceeeEeecCC------CCccCCCcCCceEEEee-----
Confidence 3456889999998888887888777764333210000 0 0001111111 11222333233333322
Q ss_pred ccceEEEEECCCCcEEEEEecCCCCCCCCCccceEECCCCcEEEEeCCCCeEEEEcCC-CceEEEecCCCCCCcccccCc
Q 020019 122 KYSAVAAYDLSTWNRLFLTQLSGPSDGKSCADDVTVDAEGNAYVTDVTGSKIWKVGVK-GEFLSIISSPLFTPKEWYKNL 200 (332)
Q Consensus 122 ~~~~l~~~d~~~g~~~~~~~l~~~~~~~~~~ndiavd~dG~lyvtd~~~~~I~~v~~~-g~~~~~~~~~~~~~p~~~~~~ 200 (332)
..+.|..||.+.|.....+. .......++++.|+|+...+-+..++|...+.. |+...-+.. .
T Consensus 430 ~dstV~lwdv~~gv~i~~f~-----kH~~pVysvafS~~g~ylAsGs~dg~V~iws~~~~~l~~s~~~-----------~ 493 (524)
T KOG0273|consen 430 FDSTVKLWDVESGVPIHTLM-----KHQEPVYSVAFSPNGRYLASGSLDGCVHIWSTKTGKLVKSYQG-----------T 493 (524)
T ss_pred cCCeEEEEEccCCceeEeec-----cCCCceEEEEecCCCcEEEecCCCCeeEeccccchheeEeecC-----------C
Confidence 23568889999888765431 113445679999999888888888988887755 454332211 1
Q ss_pred cccCeEEEccCc-eEEEEeCCCCeEEEEeC
Q 020019 201 VGLNGIVYHPDG-FLIVIHTFSGNLFKIDI 229 (332)
Q Consensus 201 ~~~nGi~~~~dG-~Lyva~~~~~~i~~id~ 229 (332)
.+.+-++|+.+| .|-++ ...+.+..+|+
T Consensus 494 ~~Ifel~Wn~~G~kl~~~-~sd~~vcvldl 522 (524)
T KOG0273|consen 494 GGIFELCWNAAGDKLGAC-ASDGSVCVLDL 522 (524)
T ss_pred CeEEEEEEcCCCCEEEEE-ecCCCceEEEe
Confidence 335678999999 55544 44455555554
|
|
| >KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=90.40 E-value=15 Score=34.23 Aligned_cols=194 Identities=16% Similarity=0.173 Sum_probs=106.2
Q ss_pred cccceEEcCCCCEEEEEecCCeEEEEECCCCCCCccceeeeEEecccCcCCCccceEEEeCCCCeEEEEEeCcCCCccce
Q 020019 46 FRECAKWDDSGRRFIVSFLDGGIGQVAVPDDYPPGTVLEEVTLVKDLELTGNGSLGLVLDHPRNRLLVVAADVFGNKYSA 125 (332)
Q Consensus 46 ~pegia~d~~g~~~~~~~~~g~I~~vd~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~vd~~~g~l~v~~~~~~~~~~~~ 125 (332)
..+++++++..-.+|+...++.|--+|....+. +. .+.. -+. +++++.++|. -++.+... +.+.
T Consensus 195 ~vr~vavS~rHpYlFs~gedk~VKCwDLe~nkv----IR--~YhG--HlS--~V~~L~lhPT-ldvl~t~g-----rDst 258 (460)
T KOG0285|consen 195 TVRGVAVSKRHPYLFSAGEDKQVKCWDLEYNKV----IR--HYHG--HLS--GVYCLDLHPT-LDVLVTGG-----RDST 258 (460)
T ss_pred eeeeeeecccCceEEEecCCCeeEEEechhhhh----HH--Hhcc--ccc--eeEEEecccc-ceeEEecC-----Ccce
Confidence 668899998876555557778888888876552 22 2321 122 6889999996 55555543 3456
Q ss_pred EEEEECCCCcEEEEEecCCCCCCCCCccceEECC-CCcEEEEeCCCCeEEEEcCC-CceEEEecCCCCCCcccccCcccc
Q 020019 126 VAAYDLSTWNRLFLTQLSGPSDGKSCADDVTVDA-EGNAYVTDVTGSKIWKVGVK-GEFLSIISSPLFTPKEWYKNLVGL 203 (332)
Q Consensus 126 l~~~d~~~g~~~~~~~l~~~~~~~~~~ndiavd~-dG~lyvtd~~~~~I~~v~~~-g~~~~~~~~~~~~~p~~~~~~~~~ 203 (332)
+.+||.++...+ ..+.+.. .-...+.+.+ |+. .+|.+..+.|--.|.. |+....+-+. ....
T Consensus 259 ~RvWDiRtr~~V--~~l~GH~---~~V~~V~~~~~dpq-vit~S~D~tvrlWDl~agkt~~tlt~h----------kksv 322 (460)
T KOG0285|consen 259 IRVWDIRTRASV--HVLSGHT---NPVASVMCQPTDPQ-VITGSHDSTVRLWDLRAGKTMITLTHH----------KKSV 322 (460)
T ss_pred EEEeeecccceE--EEecCCC---CcceeEEeecCCCc-eEEecCCceEEEeeeccCceeEeeecc----------ccee
Confidence 778999875543 3343211 2223344444 343 4455666666666643 5543322111 1234
Q ss_pred CeEEEccCceEEEEeCCCCeEEEEeCCCCCCccceeEEEEecCCCCCCCCeEEEeCCCeEEEEe-CCceEEEEcCCC
Q 020019 204 NGIVYHPDGFLIVIHTFSGNLFKIDIVDGVGEGEEIKLIRVAGGPLSFGDGLELLSPTKLVVAG-NPSARLVESSDG 279 (332)
Q Consensus 204 nGi~~~~dG~Lyva~~~~~~i~~id~~~~~~~~~~~~~v~~~g~~~~~pdGi~~~~dG~l~va~-~~~~~~v~~~dg 279 (332)
..++++|+-.+|.+...+ .|-.+++..+. .... ++| .-.-...|+..+||-+++.. |+..+.-+..+|
T Consensus 323 ral~lhP~e~~fASas~d-nik~w~~p~g~----f~~n--lsg-h~~iintl~~nsD~v~~~G~dng~~~fwdwksg 391 (460)
T KOG0285|consen 323 RALCLHPKENLFASASPD-NIKQWKLPEGE----FLQN--LSG-HNAIINTLSVNSDGVLVSGGDNGSIMFWDWKSG 391 (460)
T ss_pred eEEecCCchhhhhccCCc-cceeccCCccc----hhhc--ccc-ccceeeeeeeccCceEEEcCCceEEEEEecCcC
Confidence 588999998888765544 46566665441 2322 221 11223456666666444443 343343344554
|
|
| >KOG0645 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=90.23 E-value=13 Score=33.30 Aligned_cols=153 Identities=11% Similarity=0.111 Sum_probs=88.2
Q ss_pred cccceEEcCCCCEEEEEecCCeEEEEECCCCCCCccceeeeEEecccCcCCCccceEEEeCCCCeEEEEEeCcCCCccce
Q 020019 46 FRECAKWDDSGRRFIVSFLDGGIGQVAVPDDYPPGTVLEEVTLVKDLELTGNGSLGLVLDHPRNRLLVVAADVFGNKYSA 125 (332)
Q Consensus 46 ~pegia~d~~g~~~~~~~~~g~I~~vd~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~vd~~~g~l~v~~~~~~~~~~~~ 125 (332)
....+|+.|.|+.+.+...+.++..+...++++ +.+..++.++ +-+.+++..++ |++..... +...
T Consensus 63 sVRsvAwsp~g~~La~aSFD~t~~Iw~k~~~ef-----ecv~~lEGHE---nEVK~Vaws~s-G~~LATCS-----RDKS 128 (312)
T KOG0645|consen 63 SVRSVAWSPHGRYLASASFDATVVIWKKEDGEF-----ECVATLEGHE---NEVKCVAWSAS-GNYLATCS-----RDKS 128 (312)
T ss_pred eeeeeeecCCCcEEEEeeccceEEEeecCCCce-----eEEeeeeccc---cceeEEEEcCC-CCEEEEee-----CCCe
Confidence 556899999999555557788887777665653 3233333222 35789999996 77555443 3456
Q ss_pred EEEEECCCC-cEEEEEecCCCCCCCCCccceEECCCCcEEEEeCCCCeEE--EEcCCCc--eEEEecCCCCCCcccccCc
Q 020019 126 VAAYDLSTW-NRLFLTQLSGPSDGKSCADDVTVDAEGNAYVTDVTGSKIW--KVGVKGE--FLSIISSPLFTPKEWYKNL 200 (332)
Q Consensus 126 l~~~d~~~g-~~~~~~~l~~~~~~~~~~ndiavd~dG~lyvtd~~~~~I~--~v~~~g~--~~~~~~~~~~~~p~~~~~~ 200 (332)
+++|....+ +.....-|.... .-.-.++..|--.|.++.+..+.|- +..+++. ....++...
T Consensus 129 VWiWe~deddEfec~aVL~~Ht---qDVK~V~WHPt~dlL~S~SYDnTIk~~~~~~dddW~c~~tl~g~~---------- 195 (312)
T KOG0645|consen 129 VWIWEIDEDDEFECIAVLQEHT---QDVKHVIWHPTEDLLFSCSYDNTIKVYRDEDDDDWECVQTLDGHE---------- 195 (312)
T ss_pred EEEEEecCCCcEEEEeeecccc---ccccEEEEcCCcceeEEeccCCeEEEEeecCCCCeeEEEEecCcc----------
Confidence 788776533 333332332111 1233588899767999998877654 4433332 222222111
Q ss_pred cccCeEEEccCc-eEEEEeCCCC--eEEE
Q 020019 201 VGLNGIVYHPDG-FLIVIHTFSG--NLFK 226 (332)
Q Consensus 201 ~~~nGi~~~~dG-~Lyva~~~~~--~i~~ 226 (332)
...=.++|++.| +|--+ .+.+ +|||
T Consensus 196 ~TVW~~~F~~~G~rl~s~-sdD~tv~Iw~ 223 (312)
T KOG0645|consen 196 NTVWSLAFDNIGSRLVSC-SDDGTVSIWR 223 (312)
T ss_pred ceEEEEEecCCCceEEEe-cCCcceEeee
Confidence 123478899988 55544 3333 4555
|
|
| >PHA03098 kelch-like protein; Provisional | Back alignment and domain information |
|---|
Probab=90.21 E-value=21 Score=35.46 Aligned_cols=152 Identities=13% Similarity=0.030 Sum_probs=76.1
Q ss_pred CCCEEEEE-ec-----CCeEEEEECCCCCCCccceeeeEEecccCcC-CCccceEEEeCCCCeEEEEEeCcCCCccceEE
Q 020019 55 SGRRFIVS-FL-----DGGIGQVAVPDDYPPGTVLEEVTLVKDLELT-GNGSLGLVLDHPRNRLLVVAADVFGNKYSAVA 127 (332)
Q Consensus 55 ~g~~~~~~-~~-----~g~I~~vd~~~~~~~~~~~~~~~~~~~~~~~-~~~~~gi~vd~~~g~l~v~~~~~~~~~~~~l~ 127 (332)
++.+|+.+ .. ...++++|+.+.++ ...|.+. ...-.++++- +++||+..+.........+.
T Consensus 294 ~~~lyv~GG~~~~~~~~~~v~~yd~~~~~W----------~~~~~~~~~R~~~~~~~~--~~~lyv~GG~~~~~~~~~v~ 361 (534)
T PHA03098 294 NNVIYFIGGMNKNNLSVNSVVSYDTKTKSW----------NKVPELIYPRKNPGVTVF--NNRIYVIGGIYNSISLNTVE 361 (534)
T ss_pred CCEEEEECCCcCCCCeeccEEEEeCCCCee----------eECCCCCcccccceEEEE--CCEEEEEeCCCCCEecceEE
Confidence 34566654 21 13588898876553 2222222 1222344444 27899986532111234678
Q ss_pred EEECCCCcEEEEEecCCCCCCCCCccceEECCCCcEEEEeCC------CCeEEEEcCCCceEEEecCCCCCCcccccCcc
Q 020019 128 AYDLSTWNRLFLTQLSGPSDGKSCADDVTVDAEGNAYVTDVT------GSKIWKVGVKGEFLSIISSPLFTPKEWYKNLV 201 (332)
Q Consensus 128 ~~d~~~g~~~~~~~l~~~~~~~~~~ndiavd~dG~lyvtd~~------~~~I~~v~~~g~~~~~~~~~~~~~p~~~~~~~ 201 (332)
+||+.+++.....+++. .+.+..++--+|++|+.-.. ...++++|+.... |...+.++.+ ..
T Consensus 362 ~yd~~~~~W~~~~~lp~-----~r~~~~~~~~~~~iYv~GG~~~~~~~~~~v~~yd~~t~~--W~~~~~~p~~-----r~ 429 (534)
T PHA03098 362 SWKPGESKWREEPPLIF-----PRYNPCVVNVNNLIYVIGGISKNDELLKTVECFSLNTNK--WSKGSPLPIS-----HY 429 (534)
T ss_pred EEcCCCCceeeCCCcCc-----CCccceEEEECCEEEEECCcCCCCcccceEEEEeCCCCe--eeecCCCCcc-----cc
Confidence 89998776543333321 12122222235789986321 2568889886431 2111112111 11
Q ss_pred ccCeEEEccCceEEEEeCC--------CCeEEEEeCCCC
Q 020019 202 GLNGIVYHPDGFLIVIHTF--------SGNLFKIDIVDG 232 (332)
Q Consensus 202 ~~nGi~~~~dG~Lyva~~~--------~~~i~~id~~~~ 232 (332)
+. ..+. -++.||+.-.. .+.++++|+.+.
T Consensus 430 ~~-~~~~-~~~~iyv~GG~~~~~~~~~~~~v~~yd~~~~ 466 (534)
T PHA03098 430 GG-CAIY-HDGKIYVIGGISYIDNIKVYNIVESYNPVTN 466 (534)
T ss_pred Cc-eEEE-ECCEEEEECCccCCCCCcccceEEEecCCCC
Confidence 22 2232 35688886432 124888888865
|
|
| >KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription] | Back alignment and domain information |
|---|
Probab=90.12 E-value=12 Score=39.31 Aligned_cols=156 Identities=18% Similarity=0.199 Sum_probs=84.3
Q ss_pred cceEEcCCCCEEEEEecCCeEEEEECCC-CCCCccce-------eeeEEecccCcCC--CccceEEEeCCCCeEEEEEeC
Q 020019 48 ECAKWDDSGRRFIVSFLDGGIGQVAVPD-DYPPGTVL-------EEVTLVKDLELTG--NGSLGLVLDHPRNRLLVVAAD 117 (332)
Q Consensus 48 egia~d~~g~~~~~~~~~g~I~~vd~~~-~~~~~~~~-------~~~~~~~~~~~~~--~~~~gi~vd~~~g~l~v~~~~ 117 (332)
..+-|.+||..+.+...+.-|.++.... +.. .+. ....|-..--+.+ .-...+..+|+ +.+.+...
T Consensus 73 ~CVR~S~dG~~lAsGSDD~~v~iW~~~~~~~~--~~fgs~g~~~~vE~wk~~~~l~~H~~DV~Dv~Wsp~-~~~lvS~s- 148 (942)
T KOG0973|consen 73 NCVRFSPDGSYLASGSDDRLVMIWERAEIGSG--TVFGSTGGAKNVESWKVVSILRGHDSDVLDVNWSPD-DSLLVSVS- 148 (942)
T ss_pred eEEEECCCCCeEeeccCcceEEEeeecccCCc--ccccccccccccceeeEEEEEecCCCccceeccCCC-ccEEEEec-
Confidence 4567999998666656666555555431 000 000 0001110000000 13567888885 77666543
Q ss_pred cCCCccceEEEEECCCCcEEEEEecCCCCCCCCCccceEECCCCcEEEEeCCCCeEEEEcCC--CceEEEecCCCCC-Cc
Q 020019 118 VFGNKYSAVAAYDLSTWNRLFLTQLSGPSDGKSCADDVTVDAEGNAYVTDVTGSKIWKVGVK--GEFLSIISSPLFT-PK 194 (332)
Q Consensus 118 ~~~~~~~~l~~~d~~~g~~~~~~~l~~~~~~~~~~ndiavd~dG~lyvtd~~~~~I~~v~~~--g~~~~~~~~~~~~-~p 194 (332)
-.+.+.+|+.++.+...... + ..+.+-|+++||-|..+.+.+....|...+.. |-... +.. .|. .|
T Consensus 149 ----~DnsViiwn~~tF~~~~vl~--~---H~s~VKGvs~DP~Gky~ASqsdDrtikvwrt~dw~i~k~-It~-pf~~~~ 217 (942)
T KOG0973|consen 149 ----LDNSVIIWNAKTFELLKVLR--G---HQSLVKGVSWDPIGKYFASQSDDRTLKVWRTSDWGIEKS-ITK-PFEESP 217 (942)
T ss_pred ----ccceEEEEccccceeeeeee--c---ccccccceEECCccCeeeeecCCceEEEEEcccceeeEe-ecc-chhhCC
Confidence 24678999999875443332 1 24678899999999888887777665444422 22111 111 111 11
Q ss_pred ccccCccccCeEEEccCc-eEEEEeCCCC
Q 020019 195 EWYKNLVGLNGIVYHPDG-FLIVIHTFSG 222 (332)
Q Consensus 195 ~~~~~~~~~nGi~~~~dG-~Lyva~~~~~ 222 (332)
.-..-.=+.|+||| +|-+.+.-++
T Consensus 218 ----~~T~f~RlSWSPDG~~las~nA~n~ 242 (942)
T KOG0973|consen 218 ----LTTFFLRLSWSPDGHHLASPNAVNG 242 (942)
T ss_pred ----CcceeeecccCCCcCeecchhhccC
Confidence 11223456789999 7777666443
|
|
| >PRK13616 lipoprotein LpqB; Provisional | Back alignment and domain information |
|---|
Probab=89.96 E-value=24 Score=35.77 Aligned_cols=193 Identities=9% Similarity=0.043 Sum_probs=95.2
Q ss_pred cccceEEcCCCCEEEEEe--------cCCeEEEEECCCCCCCccceeeeEEecccCcCCCccceEEEeCCCCeEEEEEeC
Q 020019 46 FRECAKWDDSGRRFIVSF--------LDGGIGQVAVPDDYPPGTVLEEVTLVKDLELTGNGSLGLVLDHPRNRLLVVAAD 117 (332)
Q Consensus 46 ~pegia~d~~g~~~~~~~--------~~g~I~~vd~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~vd~~~g~l~v~~~~ 117 (332)
.+..++++++|+...... ....||.++.. +.. . .+.... ....-.++++.+.||++...
T Consensus 351 ~vsspaiSpdG~~vA~v~~~~~~~~d~~s~Lwv~~~g-g~~-----~--~lt~g~-----~~t~PsWspDG~~lw~v~dg 417 (591)
T PRK13616 351 NITSAALSRSGRQVAAVVTLGRGAPDPASSLWVGPLG-GVA-----V--QVLEGH-----SLTRPSWSLDADAVWVVVDG 417 (591)
T ss_pred CcccceECCCCCEEEEEEeecCCCCCcceEEEEEeCC-Ccc-----e--eeecCC-----CCCCceECCCCCceEEEecC
Confidence 566889999998653332 12368888753 321 1 222111 12233566754567776432
Q ss_pred cC------CCccceEEEEECCCCcEEEEEecCCCCCCCCCccceEECCCCc-EEEEeCCCCeEEE---EcC-CCceEEEe
Q 020019 118 VF------GNKYSAVAAYDLSTWNRLFLTQLSGPSDGKSCADDVTVDAEGN-AYVTDVTGSKIWK---VGV-KGEFLSII 186 (332)
Q Consensus 118 ~~------~~~~~~l~~~d~~~g~~~~~~~l~~~~~~~~~~ndiavd~dG~-lyvtd~~~~~I~~---v~~-~g~~~~~~ 186 (332)
.. ..+.+.+++.+.+.++... .+ ......+.+.|||. +.+.- .++|+. +.. +|+ .++
T Consensus 418 ~~~~~v~~~~~~gql~~~~vd~ge~~~--~~------~g~Issl~wSpDG~RiA~i~--~g~v~Va~Vvr~~~G~-~~l- 485 (591)
T PRK13616 418 NTVVRVIRDPATGQLARTPVDASAVAS--RV------PGPISELQLSRDGVRAAMII--GGKVYLAVVEQTEDGQ-YAL- 485 (591)
T ss_pred cceEEEeccCCCceEEEEeccCchhhh--cc------CCCcCeEEECCCCCEEEEEE--CCEEEEEEEEeCCCCc-eee-
Confidence 00 0011233333333322211 11 13477899999994 54433 257766 443 454 222
Q ss_pred cCCCCCCcccccCccc-cCeEEEccCceEEEEeCCC-CeEEEEeCCCCCCccceeEEEEecCCCCCCCCeEEEeCCCeEE
Q 020019 187 SSPLFTPKEWYKNLVG-LNGIVYHPDGFLIVIHTFS-GNLFKIDIVDGVGEGEEIKLIRVAGGPLSFGDGLELLSPTKLV 264 (332)
Q Consensus 187 ~~~~~~~p~~~~~~~~-~nGi~~~~dG~Lyva~~~~-~~i~~id~~~~~~~~~~~~~v~~~g~~~~~pdGi~~~~dG~l~ 264 (332)
..+.-. .+.... +..+.|..++.|++..... ..++++++++. ..+.+... ........++-.+ +.+|
T Consensus 486 ~~~~~l----~~~l~~~~~~l~W~~~~~L~V~~~~~~~~v~~v~vDG~-----~~~~~~~~-n~~~~v~~vaa~~-~~iy 554 (591)
T PRK13616 486 TNPREV----GPGLGDTAVSLDWRTGDSLVVGRSDPEHPVWYVNLDGS-----NSDALPSR-NLSAPVVAVAASP-STVY 554 (591)
T ss_pred cccEEe----ecccCCccccceEecCCEEEEEecCCCCceEEEecCCc-----cccccCCC-CccCceEEEecCC-ceEE
Confidence 111000 011222 4678999999888876544 45899999854 12211111 0111222333333 6799
Q ss_pred EEeCCceEEE
Q 020019 265 VAGNPSARLV 274 (332)
Q Consensus 265 va~~~~~~~v 274 (332)
+++.......
T Consensus 555 v~~~~g~~~l 564 (591)
T PRK13616 555 VTDARAVLQL 564 (591)
T ss_pred EEcCCceEEe
Confidence 9987664433
|
|
| >KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=89.66 E-value=5.4 Score=37.14 Aligned_cols=178 Identities=13% Similarity=0.109 Sum_probs=97.1
Q ss_pred cceEEcCCC-CEEEEEecCCeEEEEECCCCCCCccceeeeEEecccCcCCCccceEEEeCCCCeEEEEEeCcCCCccceE
Q 020019 48 ECAKWDDSG-RRFIVSFLDGGIGQVAVPDDYPPGTVLEEVTLVKDLELTGNGSLGLVLDHPRNRLLVVAADVFGNKYSAV 126 (332)
Q Consensus 48 egia~d~~g-~~~~~~~~~g~I~~vd~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~vd~~~g~l~v~~~~~~~~~~~~l 126 (332)
..+|=+|.. ..+++...+|.|..|+..+..+ ..++...-+ -+.||.++.. ..+++.+ + + .+
T Consensus 70 ~~lakhp~~ls~~aSGs~DG~VkiWnlsqR~~------~~~f~AH~G----~V~Gi~v~~~-~~~tvgd-D----K--tv 131 (433)
T KOG0268|consen 70 SCLAKHPNKLSTVASGSCDGEVKIWNLSQREC------IRTFKAHEG----LVRGICVTQT-SFFTVGD-D----K--TV 131 (433)
T ss_pred chhhcCcchhhhhhccccCceEEEEehhhhhh------hheeecccC----ceeeEEeccc-ceEEecC-C----c--ce
Confidence 345666654 3445556789999999876553 123332222 3689999973 4444443 2 2 23
Q ss_pred EEEECCCCcEEEEEecCCCCCCCCCccceEECCCCcEEEEeCCCCeEEEEcCCCceEEEecCCCCCCcccccCccccCeE
Q 020019 127 AAYDLSTWNRLFLTQLSGPSDGKSCADDVTVDAEGNAYVTDVTGSKIWKVGVKGEFLSIISSPLFTPKEWYKNLVGLNGI 206 (332)
Q Consensus 127 ~~~d~~~g~~~~~~~l~~~~~~~~~~ndiavd~dG~lyvtd~~~~~I~~v~~~g~~~~~~~~~~~~~p~~~~~~~~~nGi 206 (332)
..|..+ +.+...+. +.+...|+--...++++.|....=.||-...+. ...-... +......+
T Consensus 132 K~wk~~-~~p~~til------g~s~~~gIdh~~~~~~FaTcGe~i~IWD~~R~~-Pv~smsw----------G~Dti~sv 193 (433)
T KOG0268|consen 132 KQWKID-GPPLHTIL------GKSVYLGIDHHRKNSVFATCGEQIDIWDEQRDN-PVSSMSW----------GADSISSV 193 (433)
T ss_pred eeeecc-CCcceeee------ccccccccccccccccccccCceeeecccccCC-ccceeec----------CCCceeEE
Confidence 344332 12222211 234455565555566777753333344333221 1111110 11123467
Q ss_pred EEccCc-eEEEEeCCCCeEEEEeCCCCCCccceeEEEEecCCCCCCCCeEEEeCCCeEEEEeCC
Q 020019 207 VYHPDG-FLIVIHTFSGNLFKIDIVDGVGEGEEIKLIRVAGGPLSFGDGLELLSPTKLVVAGNP 269 (332)
Q Consensus 207 ~~~~dG-~Lyva~~~~~~i~~id~~~~~~~~~~~~~v~~~g~~~~~pdGi~~~~dG~l~va~~~ 269 (332)
-++|-. .+..+....+.|+-+|+...+ +++.+... -.+.+|+..|++-.|++.+.
T Consensus 194 kfNpvETsILas~~sDrsIvLyD~R~~~----Pl~KVi~~----mRTN~IswnPeafnF~~a~E 249 (433)
T KOG0268|consen 194 KFNPVETSILASCASDRSIVLYDLRQAS----PLKKVILT----MRTNTICWNPEAFNFVAANE 249 (433)
T ss_pred ecCCCcchheeeeccCCceEEEecccCC----ccceeeee----ccccceecCccccceeeccc
Confidence 788887 677666677889999998663 45444432 35678888888777777543
|
|
| >KOG0645 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=89.56 E-value=15 Score=32.95 Aligned_cols=190 Identities=14% Similarity=0.169 Sum_probs=113.8
Q ss_pred cccceEEcCC-CCEEEEEecCCeEEEEECCCCCCCccceeeeEEecccCcCC-CccceEEEeCCCCeEEEEEeCcCCCcc
Q 020019 46 FRECAKWDDS-GRRFIVSFLDGGIGQVAVPDDYPPGTVLEEVTLVKDLELTG-NGSLGLVLDHPRNRLLVVAADVFGNKY 123 (332)
Q Consensus 46 ~pegia~d~~-g~~~~~~~~~g~I~~vd~~~~~~~~~~~~~~~~~~~~~~~~-~~~~gi~vd~~~g~l~v~~~~~~~~~~ 123 (332)
..-.+++.|. |+++.+...+..|..++...+.. ..-++.+++ .+ +....++..|. |+ |++...+ .
T Consensus 16 r~W~~awhp~~g~ilAscg~Dk~vriw~~~~~~s----~~ck~vld~---~hkrsVRsvAwsp~-g~-~La~aSF----D 82 (312)
T KOG0645|consen 16 RVWSVAWHPGKGVILASCGTDKAVRIWSTSSGDS----WTCKTVLDD---GHKRSVRSVAWSPH-GR-YLASASF----D 82 (312)
T ss_pred cEEEEEeccCCceEEEeecCCceEEEEecCCCCc----EEEEEeccc---cchheeeeeeecCC-Cc-EEEEeec----c
Confidence 4457899998 87777666677777777653221 111133321 12 46788999996 88 5554432 2
Q ss_pred ceEEEEECCCCcEEEEEecCCCCCCCCCccceEECCCCcEEEEeCCCCeEEE--EcCCCceEE--EecCCCCCCcccccC
Q 020019 124 SAVAAYDLSTWNRLFLTQLSGPSDGKSCADDVTVDAEGNAYVTDVTGSKIWK--VGVKGEFLS--IISSPLFTPKEWYKN 199 (332)
Q Consensus 124 ~~l~~~d~~~g~~~~~~~l~~~~~~~~~~ndiavd~dG~lyvtd~~~~~I~~--v~~~g~~~~--~~~~~~~~~p~~~~~ 199 (332)
+.+.+|....++++....+.++. .-.-.+++.++|++..|.+....||. ++.++++.- ++....
T Consensus 83 ~t~~Iw~k~~~efecv~~lEGHE---nEVK~Vaws~sG~~LATCSRDKSVWiWe~deddEfec~aVL~~Ht--------- 150 (312)
T KOG0645|consen 83 ATVVIWKKEDGEFECVATLEGHE---NEVKCVAWSASGNYLATCSRDKSVWIWEIDEDDEFECIAVLQEHT--------- 150 (312)
T ss_pred ceEEEeecCCCceeEEeeeeccc---cceeEEEEcCCCCEEEEeeCCCeEEEEEecCCCcEEEEeeecccc---------
Confidence 34566766667777766675542 34557999999999999998887655 555566542 222111
Q ss_pred ccccCeEEEccCceEEEEeCCCCeE--EEEeCCCCCCccceeEEEEecCCCCCCCCeEEEeCCCe-EEEEe
Q 020019 200 LVGLNGIVYHPDGFLIVIHTFSGNL--FKIDIVDGVGEGEEIKLIRVAGGPLSFGDGLELLSPTK-LVVAG 267 (332)
Q Consensus 200 ~~~~nGi~~~~dG~Lyva~~~~~~i--~~id~~~~~~~~~~~~~v~~~g~~~~~pdGi~~~~dG~-l~va~ 267 (332)
--.-++.++|-.-|.++-...++| |+.+.+.. - +-++. +.| .-...-.++|++.|. |.-+.
T Consensus 151 -qDVK~V~WHPt~dlL~S~SYDnTIk~~~~~~ddd-W--~c~~t--l~g-~~~TVW~~~F~~~G~rl~s~s 214 (312)
T KOG0645|consen 151 -QDVKHVIWHPTEDLLFSCSYDNTIKVYRDEDDDD-W--ECVQT--LDG-HENTVWSLAFDNIGSRLVSCS 214 (312)
T ss_pred -ccccEEEEcCCcceeEEeccCCeEEEEeecCCCC-e--eEEEE--ecC-ccceEEEEEecCCCceEEEec
Confidence 123589999987666666666666 55443211 0 01222 221 224667888888774 44443
|
|
| >KOG1215 consensus Low-density lipoprotein receptors containing Ca2+-binding EGF-like domains [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=89.31 E-value=33 Score=36.50 Aligned_cols=191 Identities=15% Similarity=0.121 Sum_probs=112.4
Q ss_pred ccceEEEeCCCCeEEEEEeCcCCCccceEEEEECCCCcEEEEEecCCCCCCCCCccceEECCC-CcEEEEeCCCCeEEEE
Q 020019 98 GSLGLVLDHPRNRLLVVAADVFGNKYSAVAAYDLSTWNRLFLTQLSGPSDGKSCADDVTVDAE-GNAYVTDVTGSKIWKV 176 (332)
Q Consensus 98 ~~~gi~vd~~~g~l~v~~~~~~~~~~~~l~~~d~~~g~~~~~~~l~~~~~~~~~~ndiavd~d-G~lyvtd~~~~~I~~v 176 (332)
.+..+.++..++.+|-.+.. ...+.............. ..+.-.+.++++|-- +++|.+|.....|.+.
T Consensus 438 ~~~~~d~d~~~~~i~~~d~~-----~~~i~~~~~~~~~~~~~~-----~~g~~~~~~lavD~~~~~~y~tDe~~~~i~v~ 507 (877)
T KOG1215|consen 438 NAVALDFDVLNNRIYWADLS-----DEKICRASQDGSSECELC-----GDGLCIPEGLAVDWIGDNIYWTDEGNCLIEVA 507 (877)
T ss_pred cceEEEEEecCCEEEEEecc-----CCeEeeeccCCCccceEe-----ccCccccCcEEEEeccCCceecccCCceeEEE
Confidence 34455556555677777753 233433332222222111 123467889999986 5799999999998888
Q ss_pred cCCCceEEEecCCCCCCcccccCccccCeEEEccCc-eEEEEeCCC-CeEEEEeCCCCCCccceeEEEEecCCCCCCCCe
Q 020019 177 GVKGEFLSIISSPLFTPKEWYKNLVGLNGIVYHPDG-FLIVIHTFS-GNLFKIDIVDGVGEGEEIKLIRVAGGPLSFGDG 254 (332)
Q Consensus 177 ~~~g~~~~~~~~~~~~~p~~~~~~~~~nGi~~~~dG-~Lyva~~~~-~~i~~id~~~~~~~~~~~~~v~~~g~~~~~pdG 254 (332)
+.+|....++-.... ..+..++++|-. .+|+++++. .+|-|-.++.. ....+... ...-|.|
T Consensus 508 ~~~g~~~~vl~~~~l---------~~~r~~~v~p~~g~~~wtd~~~~~~i~ra~~dg~-----~~~~l~~~--~~~~p~g 571 (877)
T KOG1215|consen 508 DLDGSSRKVLVSKDL---------DLPRSIAVDPEKGLMFWTDWGQPPRIERASLDGS-----ERAVLVTN--GILWPNG 571 (877)
T ss_pred EccCCceeEEEecCC---------CCccceeeccccCeeEEecCCCCchhhhhcCCCC-----CceEEEeC--CccCCCc
Confidence 877654333222211 345689999986 999999974 45666666632 22222222 2467899
Q ss_pred EEEe-CCCeEEEEeCCce--EEEEcCCCceEEEEEeeecCCCcccceEEEEECCeEEEEEecCcccc
Q 020019 255 LELL-SPTKLVVAGNPSA--RLVESSDGWETAAVVAKFSGPVHRLATAATVKDGRVYLNHMLGFGYP 318 (332)
Q Consensus 255 i~~~-~dG~l~va~~~~~--~~v~~~dg~~~~~~~~~~~~~~~~~pt~va~~~g~lyv~~~~g~~~~ 318 (332)
+++| .+.++|-++.... .....-+| ....+.. ...+.-|-.++..++++|=..+....+.
T Consensus 572 lt~d~~~~~~yw~d~~~~~~i~~~~~~g-~~r~~~~---~~~~~~p~~~~~~~~~iyw~d~~~~~~~ 634 (877)
T KOG1215|consen 572 LTIDYETDRLYWADAKLDYTIESANMDG-QNRRVVD---SEDLPHPFGLSVFEDYIYWTDWSNRAIS 634 (877)
T ss_pred ceEEeecceeEEEcccCCcceeeeecCC-CceEEec---cccCCCceEEEEecceeEEeeccccceE
Confidence 9999 4578888875432 11233445 3332111 1234556677777888886655555433
|
|
| >KOG3545 consensus Olfactomedin and related extracellular matrix glycoproteins [Extracellular structures] | Back alignment and domain information |
|---|
Probab=89.12 E-value=12 Score=33.21 Aligned_cols=115 Identities=18% Similarity=0.209 Sum_probs=66.3
Q ss_pred ceEEEeCCCCeEEEEEeCcCCCccceEEEEECCCCcEEEEEecCCCCCCCCCccceEECCCCcEEEEeCCC---CeE-EE
Q 020019 100 LGLVLDHPRNRLLVVAADVFGNKYSAVAAYDLSTWNRLFLTQLSGPSDGKSCADDVTVDAEGNAYVTDVTG---SKI-WK 175 (332)
Q Consensus 100 ~gi~vd~~~g~l~v~~~~~~~~~~~~l~~~d~~~g~~~~~~~l~~~~~~~~~~ndiavd~dG~lyvtd~~~---~~I-~~ 175 (332)
..+++|.. | ||+.-......+.-.|.++|+.+-+.+..+... .......+++.+ .|.||+.++.+ ..| +.
T Consensus 125 iD~avDE~-G-LWviYat~~~~g~iv~skLdp~tl~~e~tW~T~--~~k~~~~~aF~i--CGvLY~v~S~~~~~~~i~ya 198 (249)
T KOG3545|consen 125 IDLAVDEN-G-LWVIYATPENAGTIVLSKLDPETLEVERTWNTT--LPKRSAGNAFMI--CGVLYVVHSYNCTHTQISYA 198 (249)
T ss_pred ccceeccc-c-eeEEecccccCCcEEeeccCHHHhheeeeeccc--cCCCCcCceEEE--eeeeEEEeccccCCceEEEE
Confidence 67899984 5 688765322112223467888766666655442 122355566665 58899998863 345 57
Q ss_pred EcCC-CceEEEecCCCCCCcccccCccccCeEEEccCc-eEEEEeCCCCeEEEEeC
Q 020019 176 VGVK-GEFLSIISSPLFTPKEWYKNLVGLNGIVYHPDG-FLIVIHTFSGNLFKIDI 229 (332)
Q Consensus 176 v~~~-g~~~~~~~~~~~~~p~~~~~~~~~nGi~~~~dG-~Lyva~~~~~~i~~id~ 229 (332)
+|.. |+..+ ..-+ |.. .......|-+.|.. .||+-+ ++.+..+++
T Consensus 199 ydt~~~~~~~-~~ip-f~N-----~y~~~~~idYNP~D~~LY~wd--ng~~l~y~l 245 (249)
T KOG3545|consen 199 YDTTTGTQER-IDLP-FPN-----PYSYATMIDYNPRDRRLYAWD--NGHQLTYNL 245 (249)
T ss_pred EEcCCCceec-cccc-ccc-----hhhhhhccCCCcccceeeEec--CCcEEEEEe
Confidence 7776 44322 1111 221 23456789999955 999854 455555543
|
|
| >KOG2139 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=89.11 E-value=8.3 Score=35.98 Aligned_cols=147 Identities=15% Similarity=0.146 Sum_probs=83.7
Q ss_pred ccceEEEeCCCCeEEEEEeCcCCCccceEEEEECCCCcEEEEEecCCCCCCCCCccceEECCCCcEEEEeCCCCeEEEEc
Q 020019 98 GSLGLVLDHPRNRLLVVAADVFGNKYSAVAAYDLSTWNRLFLTQLSGPSDGKSCADDVTVDAEGNAYVTDVTGSKIWKVG 177 (332)
Q Consensus 98 ~~~gi~vd~~~g~l~v~~~~~~~~~~~~l~~~d~~~g~~~~~~~l~~~~~~~~~~ndiavd~dG~lyvtd~~~~~I~~v~ 177 (332)
.+..|.-.+| |..++.... ....+.+||+.+|+....... +.....=+-..|||..+++.+-.+ ++++=
T Consensus 197 pVtsmqwn~d-gt~l~tAS~----gsssi~iWdpdtg~~~pL~~~-----glgg~slLkwSPdgd~lfaAt~da-vfrlw 265 (445)
T KOG2139|consen 197 PVTSMQWNED-GTILVTASF----GSSSIMIWDPDTGQKIPLIPK-----GLGGFSLLKWSPDGDVLFAATCDA-VFRLW 265 (445)
T ss_pred eeeEEEEcCC-CCEEeeccc----CcceEEEEcCCCCCccccccc-----CCCceeeEEEcCCCCEEEEecccc-eeeee
Confidence 3456777775 666665432 245688999999876544322 122333478899998777655433 33322
Q ss_pred -CC--CceEEEecCCCCCCcccccCccccCeEEEccCc-eEEEEeCCCCeEEEEeCCCC--CCc-cceeEEEE----ec-
Q 020019 178 -VK--GEFLSIISSPLFTPKEWYKNLVGLNGIVYHPDG-FLIVIHTFSGNLFKIDIVDG--VGE-GEEIKLIR----VA- 245 (332)
Q Consensus 178 -~~--g~~~~~~~~~~~~~p~~~~~~~~~nGi~~~~dG-~Lyva~~~~~~i~~id~~~~--~~~-~~~~~~v~----~~- 245 (332)
.. -...++. . +.....+-+++|+| .|.++-..+-+||++.-+.. ... .+.++.+. ++
T Consensus 266 ~e~q~wt~erw~---l--------gsgrvqtacWspcGsfLLf~~sgsp~lysl~f~~~~~~~~~~~~~k~~lliaDL~e 334 (445)
T KOG2139|consen 266 QENQSWTKERWI---L--------GSGRVQTACWSPCGSFLLFACSGSPRLYSLTFDGEDSVFLRPQSIKRVLLIADLQE 334 (445)
T ss_pred hhcccceeccee---c--------cCCceeeeeecCCCCEEEEEEcCCceEEEEeecCCCccccCcccceeeeeeccchh
Confidence 11 1111221 1 11245678999999 88889999999998765521 110 01111111 11
Q ss_pred -----CCC--CCCCCeEEEeCCCeEEEE
Q 020019 246 -----GGP--LSFGDGLELLSPTKLVVA 266 (332)
Q Consensus 246 -----g~~--~~~pdGi~~~~dG~l~va 266 (332)
|+. .+.+.-|+.||-|+-.+.
T Consensus 335 ~ti~ag~~l~cgeaq~lawDpsGeyLav 362 (445)
T KOG2139|consen 335 VTICAGQRLCCGEAQCLAWDPSGEYLAV 362 (445)
T ss_pred hhhhcCcccccCccceeeECCCCCEEEE
Confidence 122 246889999998875444
|
|
| >KOG0918 consensus Selenium-binding protein [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=89.08 E-value=16 Score=34.67 Aligned_cols=106 Identities=19% Similarity=0.256 Sum_probs=58.5
Q ss_pred ceEEEEECCCCcEEEEEecCCCCCCCCCccceEE--CCCC-cEEEEeCCCCeEEEEcCCC----ceEEEecCCCCCCccc
Q 020019 124 SAVAAYDLSTWNRLFLTQLSGPSDGKSCADDVTV--DAEG-NAYVTDVTGSKIWKVGVKG----EFLSIISSPLFTPKEW 196 (332)
Q Consensus 124 ~~l~~~d~~~g~~~~~~~l~~~~~~~~~~ndiav--d~dG-~lyvtd~~~~~I~~v~~~g----~~~~~~~~~~~~~p~~ 196 (332)
..+.+|...+++..+.+.+... ...|--+.+ +|+- .-|+....+..|+++-... ...+++..+......+
T Consensus 229 ~~lhvy~w~~~~~~QtidL~~~---gllpleiRfLh~p~~~~~fvg~Al~s~i~~~~k~~~~tws~~~visvp~~kv~~w 305 (476)
T KOG0918|consen 229 SHLHVYQWSPGELKQTIDLGDT---GLLPLEIRFLHNPSKATGFVGCALSSNIFRFFKNSDDTWSAEVVISVPPLKVENW 305 (476)
T ss_pred eeeEEEecCCccceeEEecCCC---CcceEEeeeccCCCcccceeeeeccCCceeeeeccccccceeEEEecCccccccc
Confidence 3567788888888887777421 233333333 2332 3566555555555544321 1222222221111110
Q ss_pred -ccCcc-ccCeEEEccCc-eEEEEeCCCCeEEEEeCCCC
Q 020019 197 -YKNLV-GLNGIVYHPDG-FLIVIHTFSGNLFKIDIVDG 232 (332)
Q Consensus 197 -~~~~~-~~nGi~~~~dG-~Lyva~~~~~~i~~id~~~~ 232 (332)
.+.+. -...|-++=|. .||++++..|-|+++|.+++
T Consensus 306 ~~~eMP~LITDilISmDDRFLYvs~WLHGDirQYdIsDP 344 (476)
T KOG0918|consen 306 ILPEMPGLITDILISLDDRFLYVSNWLHGDIRQYDISDP 344 (476)
T ss_pred cCcccchhhheeEEeecCcEEEEEeeeecceeeeccCCC
Confidence 11111 24566677666 99999999999999999876
|
|
| >KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=89.02 E-value=29 Score=35.53 Aligned_cols=197 Identities=12% Similarity=0.068 Sum_probs=107.6
Q ss_pred ceeEEEecCCccccceEEcCCCCEEEEEecCCeEEEEECCCCCCCccceeeeEEecccCcCCCccceEEEeCCCCeEEEE
Q 020019 35 THVYHYHSSSFFRECAKWDDSGRRFIVSFLDGGIGQVAVPDDYPPGTVLEEVTLVKDLELTGNGSLGLVLDHPRNRLLVV 114 (332)
Q Consensus 35 ~~~i~~~~~~~~pegia~d~~g~~~~~~~~~g~I~~vd~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~vd~~~g~l~v~ 114 (332)
.+.|.+.+...-..++.++.+..+. .+-.++.|-.|+.++.++ .+++.. +-..+-.+=|- ++ ||.
T Consensus 364 ~~~i~~~GHR~dVRsl~vS~d~~~~-~Sga~~SikiWn~~t~kc------iRTi~~------~y~l~~~Fvpg-d~-~Iv 428 (888)
T KOG0306|consen 364 TSNIEIGGHRSDVRSLCVSSDSILL-ASGAGESIKIWNRDTLKC------IRTITC------GYILASKFVPG-DR-YIV 428 (888)
T ss_pred cceeeeccchhheeEEEeecCceee-eecCCCcEEEEEccCcce------eEEecc------ccEEEEEecCC-Cc-eEE
Confidence 3456666655556678888775444 444457787787766653 123321 13344455552 44 555
Q ss_pred EeCcCCCccceEEEEECCCCcEEEEEecCCCCCCCCCccceEECCCCcEEEEeCCCCeEEEEcC------CCceEEE---
Q 020019 115 AADVFGNKYSAVAAYDLSTWNRLFLTQLSGPSDGKSCADDVTVDAEGNAYVTDVTGSKIWKVGV------KGEFLSI--- 185 (332)
Q Consensus 115 ~~~~~~~~~~~l~~~d~~~g~~~~~~~l~~~~~~~~~~ndiavd~dG~lyvtd~~~~~I~~v~~------~g~~~~~--- 185 (332)
.+. +.+.|.+||..+....-.++- .+ .-.-.++..|||.=++|-+....|--.+- .|....+
T Consensus 429 ~G~----k~Gel~vfdlaS~~l~Eti~A---Hd--gaIWsi~~~pD~~g~vT~saDktVkfWdf~l~~~~~gt~~k~lsl 499 (888)
T KOG0306|consen 429 LGT----KNGELQVFDLASASLVETIRA---HD--GAIWSISLSPDNKGFVTGSADKTVKFWDFKLVVSVPGTQKKVLSL 499 (888)
T ss_pred Eec----cCCceEEEEeehhhhhhhhhc---cc--cceeeeeecCCCCceEEecCCcEEEEEeEEEEeccCcccceeeee
Confidence 432 467899999987655433321 11 22334777888877777776655433221 1222111
Q ss_pred ecCCCCCCcccccCccccCeEEEccCceEEEEeCCCCeEEEEeCCCCCCccceeEEEEecCCCCCCCCeEEEeCCCeEEE
Q 020019 186 ISSPLFTPKEWYKNLVGLNGIVYHPDGFLIVIHTFSGNLFKIDIVDGVGEGEEIKLIRVAGGPLSFGDGLELLSPTKLVV 265 (332)
Q Consensus 186 ~~~~~~~~p~~~~~~~~~nGi~~~~dG~Lyva~~~~~~i~~id~~~~~~~~~~~~~v~~~g~~~~~pdGi~~~~dG~l~v 265 (332)
.....+.-+ ...-.+.++|||.+...--.++++-.+-+++- ...+.+.|..++. -.|.+.+|.++.+
T Consensus 500 ~~~rtLel~------ddvL~v~~Spdgk~LaVsLLdnTVkVyflDtl------KFflsLYGHkLPV-~smDIS~DSkliv 566 (888)
T KOG0306|consen 500 KHTRTLELE------DDVLCVSVSPDGKLLAVSLLDNTVKVYFLDTL------KFFLSLYGHKLPV-LSMDISPDSKLIV 566 (888)
T ss_pred ccceEEecc------ccEEEEEEcCCCcEEEEEeccCeEEEEEecce------eeeeeecccccce-eEEeccCCcCeEE
Confidence 111111111 12347889999944444455666666666653 2334555544543 3577778899999
Q ss_pred EeC
Q 020019 266 AGN 268 (332)
Q Consensus 266 a~~ 268 (332)
+..
T Consensus 567 TgS 569 (888)
T KOG0306|consen 567 TGS 569 (888)
T ss_pred ecc
Confidence 864
|
|
| >KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=88.58 E-value=22 Score=33.59 Aligned_cols=194 Identities=16% Similarity=0.159 Sum_probs=102.6
Q ss_pred ceEEcCCCCEEEEE-ecCCeEEEEEC-CCCCCCccceeeeEEecccCcCC--CccceEEEeCCCCeEEEEEeCcCCCccc
Q 020019 49 CAKWDDSGRRFIVS-FLDGGIGQVAV-PDDYPPGTVLEEVTLVKDLELTG--NGSLGLVLDHPRNRLLVVAADVFGNKYS 124 (332)
Q Consensus 49 gia~d~~g~~~~~~-~~~g~I~~vd~-~~~~~~~~~~~~~~~~~~~~~~~--~~~~gi~vd~~~g~l~v~~~~~~~~~~~ 124 (332)
.++|.|-.+-.+.+ ..+.+|..|+. +++... ...+.+. .+.| +.+.-++.+|...++..+.. ..+
T Consensus 86 Di~w~PfnD~vIASgSeD~~v~vW~IPe~~l~~-~ltepvv-----~L~gH~rrVg~V~wHPtA~NVLlsag-----~Dn 154 (472)
T KOG0303|consen 86 DIDWCPFNDCVIASGSEDTKVMVWQIPENGLTR-DLTEPVV-----ELYGHQRRVGLVQWHPTAPNVLLSAG-----SDN 154 (472)
T ss_pred ccccCccCCceeecCCCCceEEEEECCCccccc-CcccceE-----EEeecceeEEEEeecccchhhHhhcc-----CCc
Confidence 46778876666665 55666666663 333210 0011000 1111 23445666665344444332 246
Q ss_pred eEEEEECCCCcEEEEEecCCCCCCCCCccceEECCCCcEEEEeCCCCeEEEEcCC-CceEEEecCCCCCCcccccCcccc
Q 020019 125 AVAAYDLSTWNRLFLTQLSGPSDGKSCADDVTVDAEGNAYVTDVTGSKIWKVGVK-GEFLSIISSPLFTPKEWYKNLVGL 203 (332)
Q Consensus 125 ~l~~~d~~~g~~~~~~~l~~~~~~~~~~ndiavd~dG~lyvtd~~~~~I~~v~~~-g~~~~~~~~~~~~~p~~~~~~~~~ 203 (332)
.+..|+..+|+....... | -....+.+..||.+++|......|..+|+. |+...-.... ....+
T Consensus 155 ~v~iWnv~tgeali~l~h--p----d~i~S~sfn~dGs~l~TtckDKkvRv~dpr~~~~v~e~~~h---------eG~k~ 219 (472)
T KOG0303|consen 155 TVSIWNVGTGEALITLDH--P----DMVYSMSFNRDGSLLCTTCKDKKVRVIDPRRGTVVSEGVAH---------EGAKP 219 (472)
T ss_pred eEEEEeccCCceeeecCC--C----CeEEEEEeccCCceeeeecccceeEEEcCCCCcEeeecccc---------cCCCc
Confidence 788999999886543332 2 234558888999999999999999999987 4543221111 11223
Q ss_pred CeEEEccCceEEEEeCC---CCeEEEEeCCCCCCccceeEEEEecCCCCCCCCeEEE---eCC-CeEEEEeC--CceEEE
Q 020019 204 NGIVYHPDGFLIVIHTF---SGNLFKIDIVDGVGEGEEIKLIRVAGGPLSFGDGLEL---LSP-TKLVVAGN--PSARLV 274 (332)
Q Consensus 204 nGi~~~~dG~Lyva~~~---~~~i~~id~~~~~~~~~~~~~v~~~g~~~~~pdGi~~---~~d-G~l~va~~--~~~~~v 274 (332)
.-..|-.+|.++.+-+. ..++.-.+++.-. +++.. +.+....|+.+ |+| +-+|+++- .++|+.
T Consensus 220 ~Raifl~~g~i~tTGfsr~seRq~aLwdp~nl~---eP~~~-----~elDtSnGvl~PFyD~dt~ivYl~GKGD~~IRYy 291 (472)
T KOG0303|consen 220 ARAIFLASGKIFTTGFSRMSERQIALWDPNNLE---EPIAL-----QELDTSNGVLLPFYDPDTSIVYLCGKGDSSIRYF 291 (472)
T ss_pred ceeEEeccCceeeeccccccccceeccCccccc---Cccee-----EEeccCCceEEeeecCCCCEEEEEecCCcceEEE
Confidence 34456667765554442 2233333333210 11111 12334456665 677 56888863 345655
Q ss_pred Ec
Q 020019 275 ES 276 (332)
Q Consensus 275 ~~ 276 (332)
..
T Consensus 292 Ei 293 (472)
T KOG0303|consen 292 EI 293 (472)
T ss_pred Ee
Confidence 43
|
|
| >PF14517 Tachylectin: Tachylectin; PDB: 1TL2_A | Back alignment and domain information |
|---|
Probab=88.55 E-value=12 Score=32.87 Aligned_cols=107 Identities=15% Similarity=0.148 Sum_probs=54.5
Q ss_pred CCccceEECCCCcEEEEeCCCCeEEEEcCC--CceE-----EEecCCCCCCcccccCccccCeEEEccCceEEEEeCCCC
Q 020019 150 SCADDVTVDAEGNAYVTDVTGSKIWKVGVK--GEFL-----SIISSPLFTPKEWYKNLVGLNGIVYHPDGFLIVIHTFSG 222 (332)
Q Consensus 150 ~~~ndiavd~dG~lyvtd~~~~~I~~v~~~--g~~~-----~~~~~~~~~~p~~~~~~~~~nGi~~~~dG~Lyva~~~~~ 222 (332)
.....|+..|+|.+|.... +.+|+..+. +... ..+... ....-.-|.+++.|.||.... ++
T Consensus 34 ~~~~~i~~~P~g~lY~I~~--~~lY~~~~~~~~~~~~~~~~~~Ig~g---------~W~~F~~i~~d~~G~LYaV~~-~G 101 (229)
T PF14517_consen 34 NNFRDIAAGPNGRLYAIRN--DGLYRGSPSSSGGNTWDSGSKQIGDG---------GWNSFKFIFFDPTGVLYAVTP-DG 101 (229)
T ss_dssp TT-SEEEE-TTS-EEEEET--TEEEEES---STT--HHHH-EEEE-S----------GGG-SEEEE-TTS-EEEEET-T-
T ss_pred cccceEEEcCCceEEEEEC--CceEEecCCccCcccccccCcccccC---------cccceeEEEecCCccEEEecc-cc
Confidence 4466799999999999874 488888422 1111 111111 012234899999999997665 78
Q ss_pred eEEEEeCCCCCCc---cceeEEEEecCCCCCCCCeEEEeCCCeEEEEeCCc
Q 020019 223 NLFKIDIVDGVGE---GEEIKLIRVAGGPLSFGDGLELLSPTKLVVAGNPS 270 (332)
Q Consensus 223 ~i~~id~~~~~~~---~~~~~~v~~~g~~~~~pdGi~~~~dG~l~va~~~~ 270 (332)
+|||....+.... ....+.+-. ..-+..+-+-.+++|.||+.+...
T Consensus 102 ~lyR~~~~~~~~~~W~~~~~~~iG~--~GW~~f~~vfa~~~GvLY~i~~dg 150 (229)
T PF14517_consen 102 KLYRHPRPTNGSDNWIGGSGKKIGG--TGWNDFDAVFAGPNGVLYAITPDG 150 (229)
T ss_dssp EEEEES---STT--HHH-HSEEEE---SSGGGEEEEEE-TTS-EEEEETTE
T ss_pred ceeeccCCCccCcchhhccceeccc--CCCccceEEEeCCCccEEEEcCCC
Confidence 8999887643211 001222311 123445677778889999888654
|
|
| >KOG1215 consensus Low-density lipoprotein receptors containing Ca2+-binding EGF-like domains [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=88.49 E-value=35 Score=36.33 Aligned_cols=183 Identities=14% Similarity=0.122 Sum_probs=112.0
Q ss_pred cceEEcCCCCEE-EEEecCCeEEEEECCCCCCCccceeeeEEecccCcCCCccceEEEeCCCCeEEEEEeCcCCCccceE
Q 020019 48 ECAKWDDSGRRF-IVSFLDGGIGQVAVPDDYPPGTVLEEVTLVKDLELTGNGSLGLVLDHPRNRLLVVAADVFGNKYSAV 126 (332)
Q Consensus 48 egia~d~~g~~~-~~~~~~g~I~~vd~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~vd~~~g~l~v~~~~~~~~~~~~l 126 (332)
..+.++...+.. ..+.....|.+....+... . .+.. -+. ..+.|+++|--.+.+|..+.. ...+
T Consensus 440 ~~~d~d~~~~~i~~~d~~~~~i~~~~~~~~~~-----~--~~~~-~g~--~~~~~lavD~~~~~~y~tDe~-----~~~i 504 (877)
T KOG1215|consen 440 VALDFDVLNNRIYWADLSDEKICRASQDGSSE-----C--ELCG-DGL--CIPEGLAVDWIGDNIYWTDEG-----NCLI 504 (877)
T ss_pred eEEEEEecCCEEEEEeccCCeEeeeccCCCcc-----c--eEec-cCc--cccCcEEEEeccCCceecccC-----Ccee
Confidence 334444444433 3446677788877654431 1 2221 111 257899999877888888764 2334
Q ss_pred EEEECCCCcEEEEEecCCCCCCCCCccceEECCC-CcEEEEeCC-CCeEEEEcCCCceEEEecCCCCCCcccccCccccC
Q 020019 127 AAYDLSTWNRLFLTQLSGPSDGKSCADDVTVDAE-GNAYVTDVT-GSKIWKVGVKGEFLSIISSPLFTPKEWYKNLVGLN 204 (332)
Q Consensus 127 ~~~d~~~g~~~~~~~l~~~~~~~~~~ndiavd~d-G~lyvtd~~-~~~I~~v~~~g~~~~~~~~~~~~~p~~~~~~~~~n 204 (332)
.+.+++ |... ...+. .....|..++++|- |-+|.+|++ ..+|-|-..+|.....+... +...|+
T Consensus 505 ~v~~~~-g~~~-~vl~~---~~l~~~r~~~v~p~~g~~~wtd~~~~~~i~ra~~dg~~~~~l~~~---------~~~~p~ 570 (877)
T KOG1215|consen 505 EVADLD-GSSR-KVLVS---KDLDLPRSIAVDPEKGLMFWTDWGQPPRIERASLDGSERAVLVTN---------GILWPN 570 (877)
T ss_pred EEEEcc-CCce-eEEEe---cCCCCccceeeccccCeeEEecCCCCchhhhhcCCCCCceEEEeC---------CccCCC
Confidence 455543 2221 11111 11246777999997 779999998 45687877887644433221 235689
Q ss_pred eEEEccCc-eEEEEeCCCC-eEEEEeCCCCCCccceeEEEEecCCCCCCCCeEEEeCCCeEEEEe
Q 020019 205 GIVYHPDG-FLIVIHTFSG-NLFKIDIVDGVGEGEEIKLIRVAGGPLSFGDGLELLSPTKLVVAG 267 (332)
Q Consensus 205 Gi~~~~dG-~Lyva~~~~~-~i~~id~~~~~~~~~~~~~v~~~g~~~~~pdGi~~~~dG~l~va~ 267 (332)
|++++--. .+|+++.... .|.+++.+.. ..+ +... ..+..|.++++-.+ .+|-++
T Consensus 571 glt~d~~~~~~yw~d~~~~~~i~~~~~~g~-----~r~-~~~~-~~~~~p~~~~~~~~-~iyw~d 627 (877)
T KOG1215|consen 571 GLTIDYETDRLYWADAKLDYTIESANMDGQ-----NRR-VVDS-EDLPHPFGLSVFED-YIYWTD 627 (877)
T ss_pred cceEEeecceeEEEcccCCcceeeeecCCC-----ceE-Eecc-ccCCCceEEEEecc-eeEEee
Confidence 99999776 9999999888 6888888754 222 2222 34567889988765 566554
|
|
| >KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=88.10 E-value=25 Score=33.54 Aligned_cols=166 Identities=9% Similarity=0.035 Sum_probs=97.8
Q ss_pred ccceEEcCCCCEEEEE-ecCCeEEEEECCCCCCCccceeeeEEecccCcCCCccceEEEeCCCCeEEEEEeCcCCCccce
Q 020019 47 RECAKWDDSGRRFIVS-FLDGGIGQVAVPDDYPPGTVLEEVTLVKDLELTGNGSLGLVLDHPRNRLLVVAADVFGNKYSA 125 (332)
Q Consensus 47 pegia~d~~g~~~~~~-~~~g~I~~vd~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~vd~~~g~l~v~~~~~~~~~~~~ 125 (332)
-.|+.|.+.-.-.+.+ ..+++|..+|.........+...+.....- ...+..+++++-+..||.+..+ .++
T Consensus 180 g~glsWn~~~~g~Lls~~~d~~i~lwdi~~~~~~~~~~~p~~~~~~h---~~~VeDV~~h~~h~~lF~sv~d-----d~~ 251 (422)
T KOG0264|consen 180 GYGLSWNRQQEGTLLSGSDDHTICLWDINAESKEDKVVDPKTIFSGH---EDVVEDVAWHPLHEDLFGSVGD-----DGK 251 (422)
T ss_pred ccccccccccceeEeeccCCCcEEEEeccccccCCccccceEEeecC---CcceehhhccccchhhheeecC-----CCe
Confidence 3567887775544444 556677666654332100000111222110 0245677777765677877765 468
Q ss_pred EEEEECCCCcEEEEEecCCCCCCCCCccceEECCCC-cEEEEeCCCCeEEEEcCCCceEEEecCCCCCCcccccCccccC
Q 020019 126 VAAYDLSTWNRLFLTQLSGPSDGKSCADDVTVDAEG-NAYVTDVTGSKIWKVGVKGEFLSIISSPLFTPKEWYKNLVGLN 204 (332)
Q Consensus 126 l~~~d~~~g~~~~~~~l~~~~~~~~~~ndiavd~dG-~lyvtd~~~~~I~~v~~~g~~~~~~~~~~~~~p~~~~~~~~~n 204 (332)
|..||.++++........ + -..-.|.+++.|-+ .|+.|-+..+.|.-+|...-...+. .++. ......
T Consensus 252 L~iwD~R~~~~~~~~~~~--a-h~~~vn~~~fnp~~~~ilAT~S~D~tV~LwDlRnL~~~lh---~~e~-----H~dev~ 320 (422)
T KOG0264|consen 252 LMIWDTRSNTSKPSHSVK--A-HSAEVNCVAFNPFNEFILATGSADKTVALWDLRNLNKPLH---TFEG-----HEDEVF 320 (422)
T ss_pred EEEEEcCCCCCCCccccc--c-cCCceeEEEeCCCCCceEEeccCCCcEEEeechhcccCce---eccC-----CCcceE
Confidence 999999864221111111 1 12456889999974 6888888889998888753222211 1111 112356
Q ss_pred eEEEccCc-eEEEEeCCCCeEEEEeCCC
Q 020019 205 GIVYHPDG-FLIVIHTFSGNLFKIDIVD 231 (332)
Q Consensus 205 Gi~~~~dG-~Lyva~~~~~~i~~id~~~ 231 (332)
.+.|+|+- ++..+....+++...|+..
T Consensus 321 ~V~WSPh~etvLASSg~D~rl~vWDls~ 348 (422)
T KOG0264|consen 321 QVEWSPHNETVLASSGTDRRLNVWDLSR 348 (422)
T ss_pred EEEeCCCCCceeEecccCCcEEEEeccc
Confidence 89999998 8888888888888888773
|
|
| >KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=88.01 E-value=33 Score=34.84 Aligned_cols=225 Identities=12% Similarity=0.063 Sum_probs=122.3
Q ss_pred cccceEEcCCCCEEEEEecCCeEEEEECCCCCCCccceeeeEEecccCcCCCccceEEEeCCCCeEEEEEeCcCCCccce
Q 020019 46 FRECAKWDDSGRRFIVSFLDGGIGQVAVPDDYPPGTVLEEVTLVKDLELTGNGSLGLVLDHPRNRLLVVAADVFGNKYSA 125 (332)
Q Consensus 46 ~pegia~d~~g~~~~~~~~~g~I~~vd~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~vd~~~g~l~v~~~~~~~~~~~~ 125 (332)
-.+.+++-|||.-++... +.+++.+|+..|.. .+ ++-.+- .-++.++...+ |..|.+... ..-
T Consensus 14 ci~d~afkPDGsqL~lAA-g~rlliyD~ndG~l----lq--tLKgHK----DtVycVAys~d-GkrFASG~a-----DK~ 76 (1081)
T KOG1538|consen 14 CINDIAFKPDGTQLILAA-GSRLLVYDTSDGTL----LQ--PLKGHK----DTVYCVAYAKD-GKRFASGSA-----DKS 76 (1081)
T ss_pred chheeEECCCCceEEEec-CCEEEEEeCCCccc----cc--cccccc----ceEEEEEEccC-CceeccCCC-----cee
Confidence 347899999998776553 57899999887752 12 221111 25678888875 887766432 112
Q ss_pred EEEEECC---------------------CCcEEE----EEecCCCCC-------CCCCccceEECCCCcEEEEeCCCCeE
Q 020019 126 VAAYDLS---------------------TWNRLF----LTQLSGPSD-------GKSCADDVTVDAEGNAYVTDVTGSKI 173 (332)
Q Consensus 126 l~~~d~~---------------------~g~~~~----~~~l~~~~~-------~~~~~ndiavd~dG~lyvtd~~~~~I 173 (332)
+.+|..+ +..+.. .+.+-++.+ -..+.++.+...||.+++---.+|.|
T Consensus 77 VI~W~~klEG~LkYSH~D~IQCMsFNP~~h~LasCsLsdFglWS~~qK~V~K~kss~R~~~CsWtnDGqylalG~~nGTI 156 (1081)
T KOG1538|consen 77 VIIWTSKLEGILKYSHNDAIQCMSFNPITHQLASCSLSDFGLWSPEQKSVSKHKSSSRIICCSWTNDGQYLALGMFNGTI 156 (1081)
T ss_pred EEEecccccceeeeccCCeeeEeecCchHHHhhhcchhhccccChhhhhHHhhhhheeEEEeeecCCCcEEEEeccCceE
Confidence 3333332 111100 011111111 12578889999999877777778888
Q ss_pred EEEcCCCceEEEecCCCCCCcccccCccccCeEEEccCc------eEEEEeCCCCeEEEEeCCCCCCccceeEEEEecCC
Q 020019 174 WKVGVKGEFLSIISSPLFTPKEWYKNLVGLNGIVYHPDG------FLIVIHTFSGNLFKIDIVDGVGEGEEIKLIRVAGG 247 (332)
Q Consensus 174 ~~v~~~g~~~~~~~~~~~~~p~~~~~~~~~nGi~~~~dG------~Lyva~~~~~~i~~id~~~~~~~~~~~~~v~~~g~ 247 (332)
..-+..|+....+..+... ....-+|+++|.. .+-|.|++. ++.-..++ |+ .+. -. .
T Consensus 157 siRNk~gEek~~I~Rpgg~-------Nspiwsi~~~p~sg~G~~di~aV~DW~q-TLSFy~Ls-G~----~Ig---k~-r 219 (1081)
T KOG1538|consen 157 SIRNKNGEEKVKIERPGGS-------NSPIWSICWNPSSGEGRNDILAVADWGQ-TLSFYQLS-GK----QIG---KD-R 219 (1081)
T ss_pred EeecCCCCcceEEeCCCCC-------CCCceEEEecCCCCCCccceEEEEeccc-eeEEEEec-ce----eec---cc-c
Confidence 8777777765555443332 1123478887652 455555532 33333333 21 111 01 1
Q ss_pred CC-CCCCeEEEeCCCeEEEEe-CCceEEEEcCCCceEEEEEeeecCCCcccceEEEE-ECCeEEE
Q 020019 248 PL-SFGDGLELLSPTKLVVAG-NPSARLVESSDGWETAAVVAKFSGPVHRLATAATV-KDGRVYL 309 (332)
Q Consensus 248 ~~-~~pdGi~~~~dG~l~va~-~~~~~~v~~~dg~~~~~~~~~~~~~~~~~pt~va~-~~g~lyv 309 (332)
.+ ..|-.+..=++|.....+ ....-.+++.+|-+.+++-. .-.|..+++. .++.-|+
T Consensus 220 ~L~FdP~CisYf~NGEy~LiGGsdk~L~~fTR~GvrLGTvg~-----~D~WIWtV~~~PNsQ~v~ 279 (1081)
T KOG1538|consen 220 ALNFDPCCISYFTNGEYILLGGSDKQLSLFTRDGVRLGTVGE-----QDSWIWTVQAKPNSQYVV 279 (1081)
T ss_pred cCCCCchhheeccCCcEEEEccCCCceEEEeecCeEEeeccc-----cceeEEEEEEccCCceEE
Confidence 22 246677777888865554 33334467888855554433 1235566776 5555554
|
|
| >KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=87.64 E-value=27 Score=33.52 Aligned_cols=222 Identities=13% Similarity=0.180 Sum_probs=115.9
Q ss_pred ceEEcCCCCEEEEEecCCeEEEEECCCCCCCccceeeeEEecccCcCCCccceEEEeCCCCeEEEEEeCcCCCccceEEE
Q 020019 49 CAKWDDSGRRFIVSFLDGGIGQVAVPDDYPPGTVLEEVTLVKDLELTGNGSLGLVLDHPRNRLLVVAADVFGNKYSAVAA 128 (332)
Q Consensus 49 gia~d~~g~~~~~~~~~g~I~~vd~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~vd~~~g~l~v~~~~~~~~~~~~l~~ 128 (332)
.+++++||+.++++-.+..|+.++.++.+. .. .+...- +.+.++++-.....||.+..+ ..+.+
T Consensus 207 ~~avS~Dgkylatgg~d~~v~Iw~~~t~eh----v~--~~~ghr----~~V~~L~fr~gt~~lys~s~D------rsvkv 270 (479)
T KOG0299|consen 207 TLAVSSDGKYLATGGRDRHVQIWDCDTLEH----VK--VFKGHR----GAVSSLAFRKGTSELYSASAD------RSVKV 270 (479)
T ss_pred EEEEcCCCcEEEecCCCceEEEecCcccch----hh--cccccc----cceeeeeeecCccceeeeecC------CceEE
Confidence 478999998766665567788999887762 11 121100 246778876656889999875 24667
Q ss_pred EECCCCcEEEEEecCCCCCCCCCccceEECCCCcEE-EEeC-CCCeEEEEcCCCceEEEecCCCCCCcccccCccccCeE
Q 020019 129 YDLSTWNRLFLTQLSGPSDGKSCADDVTVDAEGNAY-VTDV-TGSKIWKVGVKGEFLSIISSPLFTPKEWYKNLVGLNGI 206 (332)
Q Consensus 129 ~d~~~g~~~~~~~l~~~~~~~~~~ndiavd~dG~ly-vtd~-~~~~I~~v~~~g~~~~~~~~~~~~~p~~~~~~~~~nGi 206 (332)
|+.+.... .-.+-+.. ...-+|-.-..++.. |... ..-++|++..+.+ +.+.... ..+..+
T Consensus 271 w~~~~~s~--vetlyGHq---d~v~~IdaL~reR~vtVGgrDrT~rlwKi~eesq-lifrg~~-----------~sidcv 333 (479)
T KOG0299|consen 271 WSIDQLSY--VETLYGHQ---DGVLGIDALSRERCVTVGGRDRTVRLWKIPEESQ-LIFRGGE-----------GSIDCV 333 (479)
T ss_pred EehhHhHH--HHHHhCCc---cceeeechhcccceEEeccccceeEEEeccccce-eeeeCCC-----------CCeeeE
Confidence 77653221 11121111 111122222223322 2211 2457888833333 3332221 235677
Q ss_pred EEccCceEEEEeCCCCeEEEEeCCCCCCccceeEEEEec-C-----CCCC---CCCeEEEeCCCeEEEEeCC--ceEEEE
Q 020019 207 VYHPDGFLIVIHTFSGNLFKIDIVDGVGEGEEIKLIRVA-G-----GPLS---FGDGLELLSPTKLVVAGNP--SARLVE 275 (332)
Q Consensus 207 ~~~~dG~Lyva~~~~~~i~~id~~~~~~~~~~~~~v~~~-g-----~~~~---~pdGi~~~~dG~l~va~~~--~~~~v~ 275 (332)
++=.+ .=||+-..+|.|+-+++.+.+ ++...... | .+.. =-.++++-+.-.|+.++.. ..++--
T Consensus 334 ~~In~-~HfvsGSdnG~IaLWs~~KKk----plf~~~~AHgv~~~~~~~~~~~Witsla~i~~sdL~asGS~~G~vrLW~ 408 (479)
T KOG0299|consen 334 AFIND-EHFVSGSDNGSIALWSLLKKK----PLFTSRLAHGVIPELDPVNGNFWITSLAVIPGSDLLASGSWSGCVRLWK 408 (479)
T ss_pred EEecc-cceeeccCCceEEEeeecccC----ceeEeeccccccCCccccccccceeeeEecccCceEEecCCCCceEEEE
Confidence 87644 456667788888888777542 33333322 1 0011 1235677777677777632 223223
Q ss_pred cCCCceEEEEEeeecCCCcccceEEEE-E-CCeEEEE
Q 020019 276 SSDGWETAAVVAKFSGPVHRLATAATV-K-DGRVYLN 310 (332)
Q Consensus 276 ~~dg~~~~~~~~~~~~~~~~~pt~va~-~-~g~lyv~ 310 (332)
..+|.+...++..++. ..+...++| . +.+|++.
T Consensus 409 i~~g~r~i~~l~~ls~--~GfVNsl~f~~sgk~ivag 443 (479)
T KOG0299|consen 409 IEDGLRAINLLYSLSL--VGFVNSLAFSNSGKRIVAG 443 (479)
T ss_pred ecCCccccceeeeccc--ccEEEEEEEccCCCEEEEe
Confidence 4566455555555442 234567777 4 4446663
|
|
| >KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=87.51 E-value=35 Score=34.63 Aligned_cols=164 Identities=20% Similarity=0.170 Sum_probs=94.6
Q ss_pred ccceEEEeCCCCeEEEEEeCcCCCccceEEEEECCCCcEEEEEecCCCCCCCCCccceEECCCCcEEEEeCCCCeEEEEc
Q 020019 98 GSLGLVLDHPRNRLLVVAADVFGNKYSAVAAYDLSTWNRLFLTQLSGPSDGKSCADDVTVDAEGNAYVTDVTGSKIWKVG 177 (332)
Q Consensus 98 ~~~gi~vd~~~g~l~v~~~~~~~~~~~~l~~~d~~~g~~~~~~~l~~~~~~~~~~ndiavd~dG~lyvtd~~~~~I~~v~ 177 (332)
+.+.+++.||.-.|.++.. +++++||++.|..... +.+. .-..+.+|...||..|.+-.....|...+
T Consensus 14 ci~d~afkPDGsqL~lAAg-------~rlliyD~ndG~llqt--LKgH---KDtVycVAys~dGkrFASG~aDK~VI~W~ 81 (1081)
T KOG1538|consen 14 CINDIAFKPDGTQLILAAG-------SRLLVYDTSDGTLLQP--LKGH---KDTVYCVAYAKDGKRFASGSADKSVIIWT 81 (1081)
T ss_pred chheeEECCCCceEEEecC-------CEEEEEeCCCcccccc--cccc---cceEEEEEEccCCceeccCCCceeEEEec
Confidence 6789999998334555432 5799999998876543 3211 24567799999999988877666666666
Q ss_pred CC--CceEEEecC--------------------CCCC--Ccc-----cccCccccCeEEEccCceEEEEeCCCCeEEEEe
Q 020019 178 VK--GEFLSIISS--------------------PLFT--PKE-----WYKNLVGLNGIVYHPDGFLIVIHTFSGNLFKID 228 (332)
Q Consensus 178 ~~--g~~~~~~~~--------------------~~~~--~p~-----~~~~~~~~nGi~~~~dG~Lyva~~~~~~i~~id 228 (332)
+. |.. .+... ..|. .+. ....-...++.+|..||+.++--..+|+|. +.
T Consensus 82 ~klEG~L-kYSH~D~IQCMsFNP~~h~LasCsLsdFglWS~~qK~V~K~kss~R~~~CsWtnDGqylalG~~nGTIs-iR 159 (1081)
T KOG1538|consen 82 SKLEGIL-KYSHNDAIQCMSFNPITHQLASCSLSDFGLWSPEQKSVSKHKSSSRIICCSWTNDGQYLALGMFNGTIS-IR 159 (1081)
T ss_pred cccccee-eeccCCeeeEeecCchHHHhhhcchhhccccChhhhhHHhhhhheeEEEeeecCCCcEEEEeccCceEE-ee
Confidence 54 322 11100 0010 011 012234678999999996555566788874 22
Q ss_pred CCCCCCccceeEEEEecCCCCCCCCeEEEeCC------CeEEEEeCCceEEEEcCCC
Q 020019 229 IVDGVGEGEEIKLIRVAGGPLSFGDGLELLSP------TKLVVAGNPSARLVESSDG 279 (332)
Q Consensus 229 ~~~~~~~~~~~~~v~~~g~~~~~pdGi~~~~d------G~l~va~~~~~~~v~~~dg 279 (332)
-.++ ++...+.-+|.+-+...++++.|. ..+-|++++..-....-+|
T Consensus 160 Nk~g----Eek~~I~Rpgg~Nspiwsi~~~p~sg~G~~di~aV~DW~qTLSFy~LsG 212 (1081)
T KOG1538|consen 160 NKNG----EEKVKIERPGGSNSPIWSICWNPSSGEGRNDILAVADWGQTLSFYQLSG 212 (1081)
T ss_pred cCCC----CcceEEeCCCCCCCCceEEEecCCCCCCccceEEEEeccceeEEEEecc
Confidence 2223 233445555434445567777643 3366666554333344555
|
|
| >KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=87.07 E-value=28 Score=32.99 Aligned_cols=109 Identities=13% Similarity=0.077 Sum_probs=60.3
Q ss_pred CccccceEEcCCCCEEEEEecCCeEEEEECCCCCCCccceeeeEEecccCcCCCccceEEEeCCCCeEEEEEeCcCCCcc
Q 020019 44 SFFRECAKWDDSGRRFIVSFLDGGIGQVAVPDDYPPGTVLEEVTLVKDLELTGNGSLGLVLDHPRNRLLVVAADVFGNKY 123 (332)
Q Consensus 44 ~~~pegia~d~~g~~~~~~~~~g~I~~vd~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~vd~~~g~l~v~~~~~~~~~~ 123 (332)
..-+..++|.++++...+..-+..++-+|...+.. . ....+ -...++|++.||- +. ||+..... +
T Consensus 123 ~~diydL~Ws~d~~~l~s~s~dns~~l~Dv~~G~l-----~--~~~~d---h~~yvqgvawDpl-~q-yv~s~s~d--r- 187 (434)
T KOG1009|consen 123 RDDIYDLAWSPDSNFLVSGSVDNSVRLWDVHAGQL-----L--AILDD---HEHYVQGVAWDPL-NQ-YVASKSSD--R- 187 (434)
T ss_pred ccchhhhhccCCCceeeeeeccceEEEEEecccee-----E--eeccc---cccccceeecchh-hh-hhhhhccC--c-
Confidence 34566799999998777665567778887766652 1 12211 1135889999985 44 66654311 1
Q ss_pred ceEEEEECCCCcEEEEE------------------ecCCCCCCCCCccceEECCCCcEEEEeC
Q 020019 124 SAVAAYDLSTWNRLFLT------------------QLSGPSDGKSCADDVTVDAEGNAYVTDV 168 (332)
Q Consensus 124 ~~l~~~d~~~g~~~~~~------------------~l~~~~~~~~~~ndiavd~dG~lyvtd~ 168 (332)
....+..+..++.... .+-.-.....|..-+.+.|||.+|++-.
T Consensus 188 -~~~~~~~~~~~~~~~~~~~~m~~~~~~~~e~~s~rLfhDeTlksFFrRlsfTPdG~llvtPa 249 (434)
T KOG1009|consen 188 -HPEGFSAKLKQVIKRHGLDIMPAKAFNEREGKSTRLFHDETLKSFFRRLSFTPDGSLLVTPA 249 (434)
T ss_pred -ccceeeeeeeeeeeeeeeeEeeecccCCCCcceeeeeecCchhhhhhhcccCCCCcEEEccc
Confidence 1222222221111111 1100011246778889999999999754
|
|
| >COG5276 Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=87.00 E-value=24 Score=32.24 Aligned_cols=180 Identities=16% Similarity=0.150 Sum_probs=94.3
Q ss_pred cceEEEeCCCCeEEEEEeCcCCCccceEEEEECCCCc-EEEEEecCCCCCCCCCccceEECCCCc-EEEEeCCCCeEEEE
Q 020019 99 SLGLVLDHPRNRLLVVAADVFGNKYSAVAAYDLSTWN-RLFLTQLSGPSDGKSCADDVTVDAEGN-AYVTDVTGSKIWKV 176 (332)
Q Consensus 99 ~~gi~vd~~~g~l~v~~~~~~~~~~~~l~~~d~~~g~-~~~~~~l~~~~~~~~~~ndiavd~dG~-lyvtd~~~~~I~~v 176 (332)
...+++.+ ..+|+++. .+.|.++|..+-+ +...-.++ . -....++.+. |+ +||+|...+-+ .+
T Consensus 89 ~~Dv~vse--~yvyvad~------ssGL~IvDIS~P~sP~~~~~ln--t--~gyaygv~vs--Gn~aYVadlddgfL-iv 153 (370)
T COG5276 89 FADVRVSE--EYVYVADW------SSGLRIVDISTPDSPTLIGFLN--T--DGYAYGVYVS--GNYAYVADLDDGFL-IV 153 (370)
T ss_pred hheeEecc--cEEEEEcC------CCceEEEeccCCCCcceecccc--C--CceEEEEEec--CCEEEEeeccCcEE-EE
Confidence 45677775 68899985 3568888876532 22111121 1 1344456554 54 89999866543 33
Q ss_pred cCC--CceEEEecCCCCCCcccccCccccCeEEEccCc-eEEEEeCCCCeEEEEeCCCCCCccceeEEEEecCCCCCCCC
Q 020019 177 GVK--GEFLSIISSPLFTPKEWYKNLVGLNGIVYHPDG-FLIVIHTFSGNLFKIDIVDGVGEGEEIKLIRVAGGPLSFGD 253 (332)
Q Consensus 177 ~~~--g~~~~~~~~~~~~~p~~~~~~~~~nGi~~~~dG-~Lyva~~~~~~i~~id~~~~~~~~~~~~~v~~~g~~~~~pd 253 (332)
|.. .+.... . ++.-|. .-..-++++ | +-|++..+.| +..+|...+.. ...+...... ++..
T Consensus 154 dvsdpssP~la-g--rya~~~-----~d~~~v~IS--Gn~AYvA~~d~G-L~ivDVSnp~s-Pvli~~~n~g----~g~~ 217 (370)
T COG5276 154 DVSDPSSPQLA-G--RYALPG-----GDTHDVAIS--GNYAYVAWRDGG-LTIVDVSNPHS-PVLIGSYNTG----PGTY 217 (370)
T ss_pred ECCCCCCceee-e--eeccCC-----CCceeEEEe--cCeEEEEEeCCC-eEEEEccCCCC-CeEEEEEecC----CceE
Confidence 322 222211 0 111110 112356776 6 9999998877 55677775521 0123333332 2334
Q ss_pred eEEEeCCCeEEEEeCCceEEEEcCCCceEEEEEeeecCCCcccceEEEEECCeEEEE
Q 020019 254 GLELLSPTKLVVAGNPSARLVESSDGWETAAVVAKFSGPVHRLATAATVKDGRVYLN 310 (332)
Q Consensus 254 Gi~~~~dG~l~va~~~~~~~v~~~dg~~~~~~~~~~~~~~~~~pt~va~~~g~lyv~ 310 (332)
++.+ .+++.|++......++...++.+.-++....+......-+++.+.+.+.||.
T Consensus 218 sv~v-sdnr~y~vvy~egvlivd~s~~ssp~~~gsyet~~p~~~s~v~Vs~~~~Yva 273 (370)
T COG5276 218 SVSV-SDNRAYLVVYDEGVLIVDVSGPSSPTVFGSYETSNPVSISTVPVSGEYAYVA 273 (370)
T ss_pred EEEe-cCCeeEEEEcccceEEEecCCCCCceEeeccccCCcccccceecccceeeee
Confidence 4544 4578888875544444445553444455443322112223456688999983
|
|
| >KOG1963 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=86.97 E-value=41 Score=34.82 Aligned_cols=166 Identities=14% Similarity=0.134 Sum_probs=97.7
Q ss_pred ceEEcCCCCEEEEEecCCeEEEEECCCCCCCccceeeeEEecccCcCCCccceEEEeCCCCeEEEEEeCcCCCccceEEE
Q 020019 49 CAKWDDSGRRFIVSFLDGGIGQVAVPDDYPPGTVLEEVTLVKDLELTGNGSLGLVLDHPRNRLLVVAADVFGNKYSAVAA 128 (332)
Q Consensus 49 gia~d~~g~~~~~~~~~g~I~~vd~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~vd~~~g~l~v~~~~~~~~~~~~l~~ 128 (332)
..++++.++...++..+|+|..+..-.-.-...-.....|.. +.++++.+..+ |. |+..++ ..+.+.+
T Consensus 210 ~~~~spn~~~~Aa~d~dGrI~vw~d~~~~~~~~t~t~lHWH~------~~V~~L~fS~~-G~-~LlSGG----~E~VLv~ 277 (792)
T KOG1963|consen 210 CVALSPNERYLAAGDSDGRILVWRDFGSSDDSETCTLLHWHH------DEVNSLSFSSD-GA-YLLSGG----REGVLVL 277 (792)
T ss_pred eEEeccccceEEEeccCCcEEEEeccccccccccceEEEecc------cccceeEEecC-Cc-eEeecc----cceEEEE
Confidence 467888888665666679998887432010000011112321 25678898886 65 444433 3467888
Q ss_pred EECCCCcEEEEEecCCCCCCCCCccceEECCCCcEEEEeCCCCeEEEEcC-CCceEEEecCCCCCCcc-cccCccccCeE
Q 020019 129 YDLSTWNRLFLTQLSGPSDGKSCADDVTVDAEGNAYVTDVTGSKIWKVGV-KGEFLSIISSPLFTPKE-WYKNLVGLNGI 206 (332)
Q Consensus 129 ~d~~~g~~~~~~~l~~~~~~~~~~ndiavd~dG~lyvtd~~~~~I~~v~~-~g~~~~~~~~~~~~~p~-~~~~~~~~nGi 206 (332)
|..++++....-++. +-.-++++.||+++|-.--..++|..+.. +-+....+.......|. ......-+.++
T Consensus 278 Wq~~T~~kqfLPRLg------s~I~~i~vS~ds~~~sl~~~DNqI~li~~~dl~~k~tIsgi~~~~~~~k~~~~~l~t~~ 351 (792)
T KOG1963|consen 278 WQLETGKKQFLPRLG------SPILHIVVSPDSDLYSLVLEDNQIHLIKASDLEIKSTISGIKPPTPSTKTRPQSLTTGV 351 (792)
T ss_pred EeecCCCcccccccC------CeeEEEEEcCCCCeEEEEecCceEEEEeccchhhhhhccCccCCCccccccccccceeE
Confidence 999888744433442 34567999999999988777888887765 32222222111111010 01123457899
Q ss_pred EEccCceEEEEeCCCCeEEEEeCCCC
Q 020019 207 VYHPDGFLIVIHTFSGNLFKIDIVDG 232 (332)
Q Consensus 207 ~~~~dG~Lyva~~~~~~i~~id~~~~ 232 (332)
+++|.=...+-+...++|.-+|+.+.
T Consensus 352 ~idpr~~~~vln~~~g~vQ~ydl~td 377 (792)
T KOG1963|consen 352 SIDPRTNSLVLNGHPGHVQFYDLYTD 377 (792)
T ss_pred EEcCCCCceeecCCCceEEEEecccc
Confidence 99994344444677788888888754
|
|
| >KOG2321 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=86.94 E-value=35 Score=33.97 Aligned_cols=102 Identities=13% Similarity=0.098 Sum_probs=66.6
Q ss_pred ceEEEEECCCCcEEEEEecCCCCCCCCCccceEECCCCcEEEEeCCCCeEEEEcCCCceE--EE-ecCCCCCCcccccCc
Q 020019 124 SAVAAYDLSTWNRLFLTQLSGPSDGKSCADDVTVDAEGNAYVTDVTGSKIWKVGVKGEFL--SI-ISSPLFTPKEWYKNL 200 (332)
Q Consensus 124 ~~l~~~d~~~g~~~~~~~l~~~~~~~~~~ndiavd~dG~lyvtd~~~~~I~~v~~~g~~~--~~-~~~~~~~~p~~~~~~ 200 (332)
..|++++++.|..+.-+... .+..|-+.+.+-+.|+.+-+..|.|--+|+.-+-. .+ +....-..|. ....
T Consensus 155 ~evYRlNLEqGrfL~P~~~~-----~~~lN~v~in~~hgLla~Gt~~g~VEfwDpR~ksrv~~l~~~~~v~s~pg-~~~~ 228 (703)
T KOG2321|consen 155 SEVYRLNLEQGRFLNPFETD-----SGELNVVSINEEHGLLACGTEDGVVEFWDPRDKSRVGTLDAASSVNSHPG-GDAA 228 (703)
T ss_pred cceEEEEccccccccccccc-----cccceeeeecCccceEEecccCceEEEecchhhhhheeeecccccCCCcc-cccc
Confidence 35888888888776544432 24567788888777888888889999999874421 11 1111100111 1123
Q ss_pred cccCeEEEccCc-eEEEEeCCCCeEEEEeCCCC
Q 020019 201 VGLNGIVYHPDG-FLIVIHTFSGNLFKIDIVDG 232 (332)
Q Consensus 201 ~~~nGi~~~~dG-~Lyva~~~~~~i~~id~~~~ 232 (332)
..+..|.|+.|| ++-|. +.+|.++-+|+.+.
T Consensus 229 ~svTal~F~d~gL~~aVG-ts~G~v~iyDLRa~ 260 (703)
T KOG2321|consen 229 PSVTALKFRDDGLHVAVG-TSTGSVLIYDLRAS 260 (703)
T ss_pred CcceEEEecCCceeEEee-ccCCcEEEEEcccC
Confidence 457899999889 77776 45788999999865
|
|
| >KOG3881 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=86.39 E-value=30 Score=32.65 Aligned_cols=130 Identities=13% Similarity=0.182 Sum_probs=79.6
Q ss_pred cceEEEEECCCCcEEEEEecCCCCC--C---CCCccceEECCC--CcEEEEeCCCCeEEEEcCCCceEEEecCCCCCCcc
Q 020019 123 YSAVAAYDLSTWNRLFLTQLSGPSD--G---KSCADDVTVDAE--GNAYVTDVTGSKIWKVGVKGEFLSIISSPLFTPKE 195 (332)
Q Consensus 123 ~~~l~~~d~~~g~~~~~~~l~~~~~--~---~~~~ndiavd~d--G~lyvtd~~~~~I~~v~~~g~~~~~~~~~~~~~p~ 195 (332)
.+.+-.||++..+.++...-. |.+ + ..-+.|+.+-+. .+-++|-+..+++..+|+.-+-..+..-...+
T Consensus 172 ~n~lkiwdle~~~qiw~aKNv-pnD~L~LrVPvW~tdi~Fl~g~~~~~fat~T~~hqvR~YDt~~qRRPV~~fd~~E--- 247 (412)
T KOG3881|consen 172 INELKIWDLEQSKQIWSAKNV-PNDRLGLRVPVWITDIRFLEGSPNYKFATITRYHQVRLYDTRHQRRPVAQFDFLE--- 247 (412)
T ss_pred ccceeeeecccceeeeeccCC-CCccccceeeeeeccceecCCCCCceEEEEecceeEEEecCcccCcceeEecccc---
Confidence 356778999876544432211 111 0 123567777766 67899999999999999873212221111111
Q ss_pred cccCccccCeEEEccCc-eEEEEeCCCCeEEEEeCCCCCCccceeEEEEecCCCCCCCCeEEEeCCCeEEEEeC
Q 020019 196 WYKNLVGLNGIVYHPDG-FLIVIHTFSGNLFKIDIVDGVGEGEEIKLIRVAGGPLSFGDGLELLSPTKLVVAGN 268 (332)
Q Consensus 196 ~~~~~~~~nGi~~~~dG-~Lyva~~~~~~i~~id~~~~~~~~~~~~~v~~~g~~~~~pdGi~~~~dG~l~va~~ 268 (332)
.....+.+.|+| .+|++++ .+.+..||..+++ .--....| -.+.+.+|.+.+.+.+..+..
T Consensus 248 -----~~is~~~l~p~gn~Iy~gn~-~g~l~~FD~r~~k-----l~g~~~kg-~tGsirsih~hp~~~~las~G 309 (412)
T KOG3881|consen 248 -----NPISSTGLTPSGNFIYTGNT-KGQLAKFDLRGGK-----LLGCGLKG-ITGSIRSIHCHPTHPVLASCG 309 (412)
T ss_pred -----CcceeeeecCCCcEEEEecc-cchhheecccCce-----eeccccCC-ccCCcceEEEcCCCceEEeec
Confidence 124567888999 8888886 5679999999763 21122222 225788999998776666653
|
|
| >KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=86.36 E-value=11 Score=37.76 Aligned_cols=153 Identities=15% Similarity=0.137 Sum_probs=77.0
Q ss_pred EecCCccccceEEcCCCCEEEEEecCCeEEEEECCCCCCCccceeeeEEecccCcCCCccceEEEeCCCCeEEEEEeCcC
Q 020019 40 YHSSSFFRECAKWDDSGRRFIVSFLDGGIGQVAVPDDYPPGTVLEEVTLVKDLELTGNGSLGLVLDHPRNRLLVVAADVF 119 (332)
Q Consensus 40 ~~~~~~~pegia~d~~g~~~~~~~~~g~I~~vd~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~vd~~~g~l~v~~~~~~ 119 (332)
+.+..-.-.++||+++|+..-+...+|+|.+..+..++. .+.+.++-.+....-|...-+ |++.++.+ +.
T Consensus 716 l~gHtdqIf~~AWSpdGr~~AtVcKDg~~rVy~Prs~e~--------pv~Eg~gpvgtRgARi~wacd-gr~viv~G-fd 785 (1012)
T KOG1445|consen 716 LVGHTDQIFGIAWSPDGRRIATVCKDGTLRVYEPRSREQ--------PVYEGKGPVGTRGARILWACD-GRIVIVVG-FD 785 (1012)
T ss_pred eccCcCceeEEEECCCCcceeeeecCceEEEeCCCCCCC--------ccccCCCCccCcceeEEEEec-CcEEEEec-cc
Confidence 444444667899999999887777889999999876652 233222211111122344443 55444432 22
Q ss_pred CCccceEEEEECCCCc--EEEEEecCCCCCCCCCccceEECCCC-cEEEEeCCCCeEEEEcCCCceEEEecCCCCCCccc
Q 020019 120 GNKYSAVAAYDLSTWN--RLFLTQLSGPSDGKSCADDVTVDAEG-NAYVTDVTGSKIWKVGVKGEFLSIISSPLFTPKEW 196 (332)
Q Consensus 120 ~~~~~~l~~~d~~~g~--~~~~~~l~~~~~~~~~~ndiavd~dG-~lyvtd~~~~~I~~v~~~g~~~~~~~~~~~~~p~~ 196 (332)
+...-.+..||.++-. .+....+.- ...+-=--.|+|- -+++|-.+...|+.+..--+-..++.-..|+.|
T Consensus 786 k~SeRQv~~Y~Aq~l~~~pl~t~~lDv----aps~LvP~YD~Ds~~lfltGKGD~~v~~yEv~~esPy~lpl~~f~sp-- 859 (1012)
T KOG1445|consen 786 KSSERQVQMYDAQTLDLRPLYTQVLDV----APSPLVPHYDYDSNVLFLTGKGDRFVNMYEVIYESPYLLPLAPFMSP-- 859 (1012)
T ss_pred ccchhhhhhhhhhhccCCcceeeeecc----cCccccccccCCCceEEEecCCCceEEEEEecCCCceeeecccccCC--
Confidence 1112245566654322 111111210 0111112347774 478887777777776432111112222233322
Q ss_pred ccCccccCeEEEccCc
Q 020019 197 YKNLVGLNGIVYHPDG 212 (332)
Q Consensus 197 ~~~~~~~nGi~~~~dG 212 (332)
.+-.||+|.++-
T Consensus 860 ----~~hqGl~fl~K~ 871 (1012)
T KOG1445|consen 860 ----VGHQGLAFLQKL 871 (1012)
T ss_pred ----Ccccceeeeccc
Confidence 345788888765
|
|
| >KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription] | Back alignment and domain information |
|---|
Probab=86.19 E-value=9.2 Score=40.16 Aligned_cols=119 Identities=16% Similarity=0.086 Sum_probs=72.3
Q ss_pred CCccceEECCCCcEEEEeCCCCeEEEEcCC-CceEEEecCCCCCCcccccCccccCeEEEccCceEEEEeCCCCeEEEEe
Q 020019 150 SCADDVTVDAEGNAYVTDVTGSKIWKVGVK-GEFLSIISSPLFTPKEWYKNLVGLNGIVYHPDGFLIVIHTFSGNLFKID 228 (332)
Q Consensus 150 ~~~ndiavd~dG~lyvtd~~~~~I~~v~~~-g~~~~~~~~~~~~~p~~~~~~~~~nGi~~~~dG~Lyva~~~~~~i~~id 228 (332)
.--.|++.+|++.+.++-+..+.|..++.. .+....+.. ...-+-|+.|||-|.-+.++.+.+.|..++
T Consensus 130 ~DV~Dv~Wsp~~~~lvS~s~DnsViiwn~~tF~~~~vl~~----------H~s~VKGvs~DP~Gky~ASqsdDrtikvwr 199 (942)
T KOG0973|consen 130 SDVLDVNWSPDDSLLVSVSLDNSVIIWNAKTFELLKVLRG----------HQSLVKGVSWDPIGKYFASQSDDRTLKVWR 199 (942)
T ss_pred CccceeccCCCccEEEEecccceEEEEccccceeeeeeec----------ccccccceEECCccCeeeeecCCceEEEEE
Confidence 346689999999999999999999998865 232322222 123356999999998888888888775555
Q ss_pred CCCCCCccceeEEEEecCCCC---CCCCeEEEeCCCeEEEEeC---C--ceEEEEcCCCceE
Q 020019 229 IVDGVGEGEEIKLIRVAGGPL---SFGDGLELLSPTKLVVAGN---P--SARLVESSDGWET 282 (332)
Q Consensus 229 ~~~~~~~~~~~~~v~~~g~~~---~~pdGi~~~~dG~l~va~~---~--~~~~v~~~dg~~~ 282 (332)
..+= ...+.+.-+-+.. ..---+...|||..+++-| . ...-++..++|+.
T Consensus 200 t~dw----~i~k~It~pf~~~~~~T~f~RlSWSPDG~~las~nA~n~~~~~~~IieR~tWk~ 257 (942)
T KOG0973|consen 200 TSDW----GIEKSITKPFEESPLTTFFLRLSWSPDGHHLASPNAVNGGKSTIAIIERGTWKV 257 (942)
T ss_pred cccc----eeeEeeccchhhCCCcceeeecccCCCcCeecchhhccCCcceeEEEecCCcee
Confidence 3331 1333343221111 1122344569999888842 2 1233455677764
|
|
| >KOG0283 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=85.47 E-value=47 Score=34.09 Aligned_cols=152 Identities=19% Similarity=0.148 Sum_probs=83.8
Q ss_pred ceEEEeCCCCeEEEEEeCcCCCccceEEEEECCCCcEEEEEecCCCCCCCCCccceEECCC-CcEEEEeCCCCeEEEEcC
Q 020019 100 LGLVLDHPRNRLLVVAADVFGNKYSAVAAYDLSTWNRLFLTQLSGPSDGKSCADDVTVDAE-GNAYVTDVTGSKIWKVGV 178 (332)
Q Consensus 100 ~gi~vd~~~g~l~v~~~~~~~~~~~~l~~~d~~~g~~~~~~~l~~~~~~~~~~ndiavd~d-G~lyvtd~~~~~I~~v~~ 178 (332)
+.|....+ +.|.-+.+| + .+..|++...+=+..+.- ..+...+++.|- .+.|++-+..+.|...+.
T Consensus 373 LDlSWSKn-~fLLSSSMD----K--TVRLWh~~~~~CL~~F~H------ndfVTcVaFnPvDDryFiSGSLD~KvRiWsI 439 (712)
T KOG0283|consen 373 LDLSWSKN-NFLLSSSMD----K--TVRLWHPGRKECLKVFSH------NDFVTCVAFNPVDDRYFISGSLDGKVRLWSI 439 (712)
T ss_pred eecccccC-CeeEecccc----c--cEEeecCCCcceeeEEec------CCeeEEEEecccCCCcEeecccccceEEeec
Confidence 34455543 555555554 2 244567665443333332 357788999995 579999888887666664
Q ss_pred CCceEEEecCCCCCCcccccCccccCeEEEccCceEEEEeCCCCeEEEEeCCCCCCccceeEEEEec-CCC--CCCCCeE
Q 020019 179 KGEFLSIISSPLFTPKEWYKNLVGLNGIVYHPDGFLIVIHTFSGNLFKIDIVDGVGEGEEIKLIRVA-GGP--LSFGDGL 255 (332)
Q Consensus 179 ~g~~~~~~~~~~~~~p~~~~~~~~~nGi~~~~dG~Lyva~~~~~~i~~id~~~~~~~~~~~~~v~~~-g~~--~~~pdGi 255 (332)
-.+....+.+-. .-...+||.|||...|.-+.+|...-++..+.+.. .-..|... ++. .....|+
T Consensus 440 ~d~~Vv~W~Dl~----------~lITAvcy~PdGk~avIGt~~G~C~fY~t~~lk~~--~~~~I~~~~~Kk~~~~rITG~ 507 (712)
T KOG0283|consen 440 SDKKVVDWNDLR----------DLITAVCYSPDGKGAVIGTFNGYCRFYDTEGLKLV--SDFHIRLHNKKKKQGKRITGL 507 (712)
T ss_pred CcCeeEeehhhh----------hhheeEEeccCCceEEEEEeccEEEEEEccCCeEE--EeeeEeeccCccccCceeeee
Confidence 434333333211 12468999999944444455666666666654321 11112221 111 1246778
Q ss_pred EEeCC--CeEEEEeCCc-eEEEEc
Q 020019 256 ELLSP--TKLVVAGNPS-ARLVES 276 (332)
Q Consensus 256 ~~~~d--G~l~va~~~~-~~~v~~ 276 (332)
.+.+. .++.|+.|.+ +|++..
T Consensus 508 Q~~p~~~~~vLVTSnDSrIRI~d~ 531 (712)
T KOG0283|consen 508 QFFPGDPDEVLVTSNDSRIRIYDG 531 (712)
T ss_pred EecCCCCCeEEEecCCCceEEEec
Confidence 77643 3688887654 454443
|
|
| >PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation | Back alignment and domain information |
|---|
Probab=85.22 E-value=27 Score=31.10 Aligned_cols=163 Identities=14% Similarity=0.133 Sum_probs=85.7
Q ss_pred cccceEEcCCCCEEEEEe---cCCeEEEEECCCCCCCccceeeeEEecccCcCCCccceEEEeCCCCeEEEEEeCcCCCc
Q 020019 46 FRECAKWDDSGRRFIVSF---LDGGIGQVAVPDDYPPGTVLEEVTLVKDLELTGNGSLGLVLDHPRNRLLVVAADVFGNK 122 (332)
Q Consensus 46 ~pegia~d~~g~~~~~~~---~~g~I~~vd~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~vd~~~g~l~v~~~~~~~~~ 122 (332)
.++.++++++|+.+..-. ...+|+....++.. . .+.. +.....-.++++ +.+|++..+..
T Consensus 25 ~~~s~AvS~dg~~~A~v~~~~~~~~L~~~~~~~~~------~--~~~~-----g~~l~~PS~d~~-g~~W~v~~~~~--- 87 (253)
T PF10647_consen 25 DVTSPAVSPDGSRVAAVSEGDGGRSLYVGPAGGPV------R--PVLT-----GGSLTRPSWDPD-GWVWTVDDGSG--- 87 (253)
T ss_pred cccceEECCCCCeEEEEEEcCCCCEEEEEcCCCcc------e--eecc-----CCccccccccCC-CCEEEEEcCCC---
Confidence 678899999998664432 34568888655332 1 2221 113334477886 99999976421
Q ss_pred cceEEEEECCCCcEEEEEecCCCCCCCCCccceEECCCC-c-EEEE-eCCCCeEEE--E--cCCCceEEEecCCCCCCcc
Q 020019 123 YSAVAAYDLSTWNRLFLTQLSGPSDGKSCADDVTVDAEG-N-AYVT-DVTGSKIWK--V--GVKGEFLSIISSPLFTPKE 195 (332)
Q Consensus 123 ~~~l~~~d~~~g~~~~~~~l~~~~~~~~~~ndiavd~dG-~-lyvt-d~~~~~I~~--v--~~~g~~~~~~~~~~~~~p~ 195 (332)
...+. .+..+++... ..+..+.. ......+.+.||| + .++. +...++|+. + +.+|....+ ..+.-..+
T Consensus 88 ~~~~~-~~~~~g~~~~-~~v~~~~~-~~~I~~l~vSpDG~RvA~v~~~~~~~~v~va~V~r~~~g~~~~l-~~~~~~~~- 162 (253)
T PF10647_consen 88 GVRVV-RDSASGTGEP-VEVDWPGL-RGRITALRVSPDGTRVAVVVEDGGGGRVYVAGVVRDGDGVPRRL-TGPRRVAP- 162 (253)
T ss_pred ceEEE-EecCCCccee-EEeccccc-CCceEEEEECCCCcEEEEEEecCCCCeEEEEEEEeCCCCCccee-ccceEecc-
Confidence 12222 2333444322 22221211 1156789999999 4 4444 344566665 2 233411111 11110000
Q ss_pred cccCccccCeEEEccCceEEEEeCCC-CeEEE-EeCCCC
Q 020019 196 WYKNLVGLNGIVYHPDGFLIVIHTFS-GNLFK-IDIVDG 232 (332)
Q Consensus 196 ~~~~~~~~nGi~~~~dG~Lyva~~~~-~~i~~-id~~~~ 232 (332)
........++|.++++|.|..... ..++. +..+.+
T Consensus 163 --~~~~~v~~v~W~~~~~L~V~~~~~~~~~~~~v~~dG~ 199 (253)
T PF10647_consen 163 --PLLSDVTDVAWSDDSTLVVLGRSAGGPVVRLVSVDGG 199 (253)
T ss_pred --cccCcceeeeecCCCEEEEEeCCCCCceeEEEEccCC
Confidence 123456799999999776666544 34665 655543
|
It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues. |
| >KOG3881 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=85.03 E-value=16 Score=34.34 Aligned_cols=116 Identities=9% Similarity=-0.012 Sum_probs=74.9
Q ss_pred cccceEEcCC--CCEEEEEecCCeEEEEECCCCCCCccceeeeEEecccCcCCCccceEEEeCCCCeEEEEEeCcCCCcc
Q 020019 46 FRECAKWDDS--GRRFIVSFLDGGIGQVAVPDDYPPGTVLEEVTLVKDLELTGNGSLGLVLDHPRNRLLVVAADVFGNKY 123 (332)
Q Consensus 46 ~pegia~d~~--g~~~~~~~~~g~I~~vd~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~vd~~~g~l~v~~~~~~~~~~ 123 (332)
++.++.|-+. .+.|++....+++..+|+..+..| +...+ +..+....+...++.+.+|+++. .
T Consensus 204 W~tdi~Fl~g~~~~~fat~T~~hqvR~YDt~~qRRP--------V~~fd-~~E~~is~~~l~p~gn~Iy~gn~------~ 268 (412)
T KOG3881|consen 204 WITDIRFLEGSPNYKFATITRYHQVRLYDTRHQRRP--------VAQFD-FLENPISSTGLTPSGNFIYTGNT------K 268 (412)
T ss_pred eeccceecCCCCCceEEEEecceeEEEecCcccCcc--------eeEec-cccCcceeeeecCCCcEEEEecc------c
Confidence 5566666665 556666666789999998755432 22111 11124456777887566777764 5
Q ss_pred ceEEEEECCCCcEEEEEecCCCCCCCCCccceEECCCCcEEEEeCCCCeEEEEcCCC
Q 020019 124 SAVAAYDLSTWNRLFLTQLSGPSDGKSCADDVTVDAEGNAYVTDVTGSKIWKVGVKG 180 (332)
Q Consensus 124 ~~l~~~d~~~g~~~~~~~l~~~~~~~~~~ndiavd~dG~lyvtd~~~~~I~~v~~~g 180 (332)
+.|..||.+.++.... .+. ...+.+.+|..+|.+.+..+....--|..+|.+.
T Consensus 269 g~l~~FD~r~~kl~g~-~~k---g~tGsirsih~hp~~~~las~GLDRyvRIhD~kt 321 (412)
T KOG3881|consen 269 GQLAKFDLRGGKLLGC-GLK---GITGSIRSIHCHPTHPVLASCGLDRYVRIHDIKT 321 (412)
T ss_pred chhheecccCceeecc-ccC---CccCCcceEEEcCCCceEEeeccceeEEEeeccc
Confidence 6799999998776432 221 1236788899999987777766666666677664
|
|
| >TIGR03548 mutarot_permut cyclically-permuted mutatrotase family protein | Back alignment and domain information |
|---|
Probab=84.84 E-value=32 Score=31.62 Aligned_cols=114 Identities=12% Similarity=0.070 Sum_probs=57.4
Q ss_pred CCCEEEEE-ec----CCeEEEEECCCCCCCccceeeeEEecccCcCC-CccceEEEeCCCCeEEEEEeCcCCCccceEEE
Q 020019 55 SGRRFIVS-FL----DGGIGQVAVPDDYPPGTVLEEVTLVKDLELTG-NGSLGLVLDHPRNRLLVVAADVFGNKYSAVAA 128 (332)
Q Consensus 55 ~g~~~~~~-~~----~g~I~~vd~~~~~~~~~~~~~~~~~~~~~~~~-~~~~gi~vd~~~g~l~v~~~~~~~~~~~~l~~ 128 (332)
++.+|+.. .. ...++++++.+.++ + ..|...+.++. ..-.+.++- +++|||..........+.+.+
T Consensus 72 ~~~lyviGG~~~~~~~~~v~~~d~~~~~w-----~-~~~~~~~~lp~~~~~~~~~~~--~~~iYv~GG~~~~~~~~~v~~ 143 (323)
T TIGR03548 72 ENGIYYIGGSNSSERFSSVYRITLDESKE-----E-LICETIGNLPFTFENGSACYK--DGTLYVGGGNRNGKPSNKSYL 143 (323)
T ss_pred CCEEEEEcCCCCCCCceeEEEEEEcCCce-----e-eeeeEcCCCCcCccCceEEEE--CCEEEEEeCcCCCccCceEEE
Confidence 45677654 22 14688888765542 0 01222222221 112334444 279999854321122457899
Q ss_pred EECCCCcEEEEEecCCCCCCCCCccceEECCCCcEEEEeCCC----CeEEEEcCCC
Q 020019 129 YDLSTWNRLFLTQLSGPSDGKSCADDVTVDAEGNAYVTDVTG----SKIWKVGVKG 180 (332)
Q Consensus 129 ~d~~~g~~~~~~~l~~~~~~~~~~ndiavd~dG~lyvtd~~~----~~I~~v~~~g 180 (332)
||+++.+......++ . ..+....++--++.||+---.. ..++++|+..
T Consensus 144 yd~~~~~W~~~~~~p--~--~~r~~~~~~~~~~~iYv~GG~~~~~~~~~~~yd~~~ 195 (323)
T TIGR03548 144 FNLETQEWFELPDFP--G--EPRVQPVCVKLQNELYVFGGGSNIAYTDGYKYSPKK 195 (323)
T ss_pred EcCCCCCeeECCCCC--C--CCCCcceEEEECCEEEEEcCCCCccccceEEEecCC
Confidence 999877654332232 1 1222333333456799863221 2467888764
|
Members of this protein family show essentially full-length homology, cyclically permuted, to YjhT from Escherichia coli. YjhT was shown to act as a mutarotase for sialic acid, and by this ability to be able to act as a virulence factor. Members of the YjhT family (TIGR03547) and this cyclically-permuted family have multiple repeats of the beta-propeller-forming Kelch repeat. |
| >KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=84.83 E-value=43 Score=33.09 Aligned_cols=200 Identities=15% Similarity=0.161 Sum_probs=98.5
Q ss_pred cceEEcCCCCEEEEEecCCeEEEEECCCCCCCccceeeeEEecccCcCC--CccceEEEeCCCCeEEEEEeCcCCCccce
Q 020019 48 ECAKWDDSGRRFIVSFLDGGIGQVAVPDDYPPGTVLEEVTLVKDLELTG--NGSLGLVLDHPRNRLLVVAADVFGNKYSA 125 (332)
Q Consensus 48 egia~d~~g~~~~~~~~~g~I~~vd~~~~~~~~~~~~~~~~~~~~~~~~--~~~~gi~vd~~~g~l~v~~~~~~~~~~~~ 125 (332)
-++++...+...|+.-.+|.|.-|...-..-+.+-.+. ..+... +.| ...++++++..+.+|..|+.+ +.
T Consensus 348 l~v~v~~n~~~~ysgg~Dg~I~~w~~p~n~dp~ds~dp-~vl~~~-l~Ghtdavw~l~~s~~~~~Llscs~D------gT 419 (577)
T KOG0642|consen 348 LCVVVPSNGEHCYSGGIDGTIRCWNLPPNQDPDDSYDP-SVLSGT-LLGHTDAVWLLALSSTKDRLLSCSSD------GT 419 (577)
T ss_pred EEEEecCCceEEEeeccCceeeeeccCCCCCcccccCc-chhccc-eeccccceeeeeecccccceeeecCC------ce
Confidence 35678888888887766888877732211100000000 111110 111 257899999887888888764 45
Q ss_pred EEEEECCCCcEEEEEecCCCCCCCCCccceEECCCC-cEEEEeCCCCeEEEEcC-C-CceEEEecCCCCCCcccccCccc
Q 020019 126 VAAYDLSTWNRLFLTQLSGPSDGKSCADDVTVDAEG-NAYVTDVTGSKIWKVGV-K-GEFLSIISSPLFTPKEWYKNLVG 202 (332)
Q Consensus 126 l~~~d~~~g~~~~~~~l~~~~~~~~~~ndiavd~dG-~lyvtd~~~~~I~~v~~-~-g~~~~~~~~~~~~~p~~~~~~~~ 202 (332)
+..|++..... ..+..+. ....|.-+.+-..- .+-+++. .-..+.++. + +....++.+...+.+. ....
T Consensus 420 vr~w~~~~~~~---~~f~~~~-e~g~Plsvd~~ss~~a~~~~s~-~~~~~~~~~~ev~s~~~~~~s~~~~~~~---~~~~ 491 (577)
T KOG0642|consen 420 VRLWEPTEESP---CTFGEPK-EHGYPLSVDRTSSRPAHSLASF-RFGYTSIDDMEVVSDLLIFESSASPGPR---RYPQ 491 (577)
T ss_pred EEeeccCCcCc---cccCCcc-ccCCcceEeeccchhHhhhhhc-ccccccchhhhhhhheeeccccCCCccc---ccCc
Confidence 77787754333 2222221 23455444443322 1222221 122222221 1 2222333332222111 1234
Q ss_pred cCeEEEccCceEEEEeCCCCeEEEEeCCCCCCccceeEEEEecCCCCCCCCeEEEeCCCeEEEEeCCc
Q 020019 203 LNGIVYHPDGFLIVIHTFSGNLFKIDIVDGVGEGEEIKLIRVAGGPLSFGDGLELLSPTKLVVAGNPS 270 (332)
Q Consensus 203 ~nGi~~~~dG~Lyva~~~~~~i~~id~~~~~~~~~~~~~v~~~g~~~~~pdGi~~~~dG~l~va~~~~ 270 (332)
.|=|+..|.+-+-++...++.|..+|-.++. .+.... +.....++++++++|-.+++.+..
T Consensus 492 in~vVs~~~~~~~~~~hed~~Ir~~dn~~~~----~l~s~~---a~~~svtslai~~ng~~l~s~s~d 552 (577)
T KOG0642|consen 492 INKVVSHPTADITFTAHEDRSIRFFDNKTGK----ILHSMV---AHKDSVTSLAIDPNGPYLMSGSHD 552 (577)
T ss_pred cceEEecCCCCeeEecccCCceecccccccc----cchhee---eccceecceeecCCCceEEeecCC
Confidence 5667777777444445566667666666553 222111 233466899999988766666543
|
|
| >KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=84.32 E-value=37 Score=33.93 Aligned_cols=189 Identities=12% Similarity=0.139 Sum_probs=99.7
Q ss_pred ccceEEEeCCCCeEEEEEeCcCCCccceEEEEECCCCcEEEEEecCCCCCCCCCccceEECCCCcE-EEEeCCCCeEEEE
Q 020019 98 GSLGLVLDHPRNRLLVVAADVFGNKYSAVAAYDLSTWNRLFLTQLSGPSDGKSCADDVTVDAEGNA-YVTDVTGSKIWKV 176 (332)
Q Consensus 98 ~~~gi~vd~~~g~l~v~~~~~~~~~~~~l~~~d~~~g~~~~~~~l~~~~~~~~~~ndiavd~dG~l-yvtd~~~~~I~~v 176 (332)
-+.+|.+++. |. |++.+. ..+.+.+|...+|.-++.+++.+ ....+++.|.+++ .++-....+++.+
T Consensus 402 ~Vr~iSvdp~-G~-wlasGs----dDGtvriWEi~TgRcvr~~~~d~------~I~~vaw~P~~~~~vLAvA~~~~~~iv 469 (733)
T KOG0650|consen 402 LVRSISVDPS-GE-WLASGS----DDGTVRIWEIATGRCVRTVQFDS------EIRSVAWNPLSDLCVLAVAVGECVLIV 469 (733)
T ss_pred eEEEEEecCC-cc-eeeecC----CCCcEEEEEeecceEEEEEeecc------eeEEEEecCCCCceeEEEEecCceEEe
Confidence 3578999994 76 777653 34668889999998777777742 2334667766542 2222233335555
Q ss_pred cCC-Cc-eEE------EecC--CCCC--Ccc----------------cccCccccCeEEEccCc-eEEEEeCC--CCeEE
Q 020019 177 GVK-GE-FLS------IISS--PLFT--PKE----------------WYKNLVGLNGIVYHPDG-FLIVIHTF--SGNLF 225 (332)
Q Consensus 177 ~~~-g~-~~~------~~~~--~~~~--~p~----------------~~~~~~~~nGi~~~~dG-~Lyva~~~--~~~i~ 225 (332)
++. |. ... +... ...+ +++ .+....-.+-+.|+.+| +|-+.... +.+|+
T Consensus 470 np~~G~~~e~~~t~ell~~~~~~~~p~~~~~~W~~~~~~e~~~~v~~~I~~~k~i~~vtWHrkGDYlatV~~~~~~~~Vl 549 (733)
T KOG0650|consen 470 NPIFGDRLEVGPTKELLASAPNESEPDAAVVTWSRASLDELEKGVCIVIKHPKSIRQVTWHRKGDYLATVMPDSGNKSVL 549 (733)
T ss_pred CccccchhhhcchhhhhhcCCCccCCcccceeechhhhhhhccceEEEEecCCccceeeeecCCceEEEeccCCCcceEE
Confidence 543 31 000 0000 0000 000 12233445788899999 66655442 34565
Q ss_pred EEeCCCCCCccceeEEEEecCCCCCCCCeEEEeCC-CeEEEEeCCceEEEEcCCCceEEEEEeeecCCCcccceEEEE--
Q 020019 226 KIDIVDGVGEGEEIKLIRVAGGPLSFGDGLELLSP-TKLVVAGNPSARLVESSDGWETAAVVAKFSGPVHRLATAATV-- 302 (332)
Q Consensus 226 ~id~~~~~~~~~~~~~v~~~g~~~~~pdGi~~~~d-G~l~va~~~~~~~v~~~dg~~~~~~~~~~~~~~~~~pt~va~-- 302 (332)
.-.+..... . .++. ...+.+..+.|.|- -.|+||.....++...... .+.+.+. +...|-+++++
T Consensus 550 iHQLSK~~s----Q--~PF~-kskG~vq~v~FHPs~p~lfVaTq~~vRiYdL~kq----elvKkL~-tg~kwiS~msihp 617 (733)
T KOG0650|consen 550 IHQLSKRKS----Q--SPFR-KSKGLVQRVKFHPSKPYLFVATQRSVRIYDLSKQ----ELVKKLL-TGSKWISSMSIHP 617 (733)
T ss_pred EEecccccc----c--Cchh-hcCCceeEEEecCCCceEEEEeccceEEEehhHH----HHHHHHh-cCCeeeeeeeecC
Confidence 555554321 1 1111 11245667777764 6799998877676544322 2333222 22456677777
Q ss_pred ECCeEEEE
Q 020019 303 KDGRVYLN 310 (332)
Q Consensus 303 ~~g~lyv~ 310 (332)
.++.|.+.
T Consensus 618 ~GDnli~g 625 (733)
T KOG0650|consen 618 NGDNLILG 625 (733)
T ss_pred CCCeEEEe
Confidence 45666664
|
|
| >PF01011 PQQ: PQQ enzyme repeat family | Back alignment and domain information |
|---|
Probab=84.27 E-value=2.3 Score=25.73 Aligned_cols=29 Identities=24% Similarity=0.132 Sum_probs=22.8
Q ss_pred CeEEEEEeCcCCCccceEEEEECCCCcEEEEEecC
Q 020019 109 NRLLVVAADVFGNKYSAVAAYDLSTWNRLFLTQLS 143 (332)
Q Consensus 109 g~l~v~~~~~~~~~~~~l~~~d~~~g~~~~~~~l~ 143 (332)
|++|+... .+.|+.+|.++|+.++.++..
T Consensus 1 ~~v~~~~~------~g~l~AlD~~TG~~~W~~~~~ 29 (38)
T PF01011_consen 1 GRVYVGTP------DGYLYALDAKTGKVLWKFQTG 29 (38)
T ss_dssp TEEEEETT------TSEEEEEETTTTSEEEEEESS
T ss_pred CEEEEeCC------CCEEEEEECCCCCEEEeeeCC
Confidence 46777733 467999999999999888764
|
; InterPro: IPR002372 Pyrrolo-quinoline quinone (PQQ) is a redox coenzyme, which serves as a cofactor for a number of enzymes (quinoproteins) and particularly for some bacterial dehydrogenases [, ]. A number of bacterial quinoproteins belong to this family. Enzymes in this group have repeats of a beta propeller.; PDB: 1H4I_C 1H4J_E 1W6S_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A 1G72_A .... |
| >PLN00033 photosystem II stability/assembly factor; Provisional | Back alignment and domain information |
|---|
Probab=83.50 E-value=43 Score=32.10 Aligned_cols=106 Identities=13% Similarity=0.086 Sum_probs=57.0
Q ss_pred cccCeEEEccCceEEEEeCCCCeEEEEeCCCCCCcc-ceeEEEEecCCCCCCCCeEEEeCCCeEEEEeCCceEEEEcCCC
Q 020019 201 VGLNGIVYHPDGFLIVIHTFSGNLFKIDIVDGVGEG-EEIKLIRVAGGPLSFGDGLELLSPTKLVVAGNPSARLVESSDG 279 (332)
Q Consensus 201 ~~~nGi~~~~dG~Lyva~~~~~~i~~id~~~~~~~~-~~~~~v~~~g~~~~~pdGi~~~~dG~l~va~~~~~~~v~~~dg 279 (332)
....++.+.+||.+|++-.. +.+++-+ +.+.... .....+... .....+.++.+.+++++|++++....++..+.|
T Consensus 281 ~~l~~v~~~~dg~l~l~g~~-G~l~~S~-d~G~~~~~~~f~~~~~~-~~~~~l~~v~~~~d~~~~a~G~~G~v~~s~D~G 357 (398)
T PLN00033 281 RRIQNMGWRADGGLWLLTRG-GGLYVSK-GTGLTEEDFDFEEADIK-SRGFGILDVGYRSKKEAWAAGGSGILLRSTDGG 357 (398)
T ss_pred cceeeeeEcCCCCEEEEeCC-ceEEEec-CCCCcccccceeecccC-CCCcceEEEEEcCCCcEEEEECCCcEEEeCCCC
Confidence 34678889999988887654 5565443 2231100 011222211 011235667888899999999876554444445
Q ss_pred ceEEEEEe---eecCCCcccceEEEE-ECCeEEEEEecC
Q 020019 280 WETAAVVA---KFSGPVHRLATAATV-KDGRVYLNHMLG 314 (332)
Q Consensus 280 ~~~~~~~~---~~~~~~~~~pt~va~-~~g~lyv~~~~g 314 (332)
++=+... .+..+ + ..+.+ .+++.||...-|
T Consensus 358 -~tW~~~~~~~~~~~~-l---y~v~f~~~~~g~~~G~~G 391 (398)
T PLN00033 358 -KSWKRDKGADNIAAN-L---YSVKFFDDKKGFVLGNDG 391 (398)
T ss_pred -cceeEccccCCCCcc-e---eEEEEcCCCceEEEeCCc
Confidence 3322222 11111 2 35666 678899866544
|
|
| >PF06739 SBBP: Beta-propeller repeat; InterPro: IPR010620 This family is related to IPR001680 from INTERPRO and is likely to also form a beta-propeller | Back alignment and domain information |
|---|
Probab=83.14 E-value=1 Score=27.56 Aligned_cols=19 Identities=26% Similarity=0.581 Sum_probs=16.5
Q ss_pred CCCeEEEeCCCeEEEEeCC
Q 020019 251 FGDGLELLSPTKLVVAGNP 269 (332)
Q Consensus 251 ~pdGi~~~~dG~l~va~~~ 269 (332)
.+.+|++|++|++||++..
T Consensus 14 ~~~~IavD~~GNiYv~G~T 32 (38)
T PF06739_consen 14 YGNGIAVDSNGNIYVTGYT 32 (38)
T ss_pred eEEEEEECCCCCEEEEEee
Confidence 5789999999999999743
|
SBBP stands for Seven Bladed Beta Propeller. |
| >KOG0288 consensus WD40 repeat protein TipD [General function prediction only] | Back alignment and domain information |
|---|
Probab=83.12 E-value=42 Score=31.95 Aligned_cols=122 Identities=11% Similarity=0.188 Sum_probs=75.6
Q ss_pred ceEEEEECCCCcEEEEEecCCCCCCCCCccceEECCCCcEEEEeCCCCeEEEEcCCCceEEE-ecCCCCCCcccccCccc
Q 020019 124 SAVAAYDLSTWNRLFLTQLSGPSDGKSCADDVTVDAEGNAYVTDVTGSKIWKVGVKGEFLSI-ISSPLFTPKEWYKNLVG 202 (332)
Q Consensus 124 ~~l~~~d~~~g~~~~~~~l~~~~~~~~~~ndiavd~dG~lyvtd~~~~~I~~v~~~g~~~~~-~~~~~~~~p~~~~~~~~ 202 (332)
.+|..||.++.......++ .+....+.+..+|.=..+.+....+-.+|..++..+. +..+.+.. ..-
T Consensus 322 kkvRfwD~Rs~~~~~sv~~------gg~vtSl~ls~~g~~lLsssRDdtl~viDlRt~eI~~~~sA~g~k~------asD 389 (459)
T KOG0288|consen 322 KKVRFWDIRSADKTRSVPL------GGRVTSLDLSMDGLELLSSSRDDTLKVIDLRTKEIRQTFSAEGFKC------ASD 389 (459)
T ss_pred cceEEEeccCCceeeEeec------CcceeeEeeccCCeEEeeecCCCceeeeecccccEEEEeecccccc------ccc
Confidence 4577888887776655554 2355667777888645555777788888877654432 22222210 112
Q ss_pred cCeEEEccCceEEEEeCCCCeEEEEeCCCCCCccceeEEEEecCCCCCCCCeEEEeCCCe
Q 020019 203 LNGIVYHPDGFLIVIHTFSGNLFKIDIVDGVGEGEEIKLIRVAGGPLSFGDGLELLSPTK 262 (332)
Q Consensus 203 ~nGi~~~~dG~Lyva~~~~~~i~~id~~~~~~~~~~~~~v~~~g~~~~~pdGi~~~~dG~ 262 (332)
-+-++|+||+.+..+-..+++||.++..+++ ..+.+..++ .-+....+++++-|.
T Consensus 390 wtrvvfSpd~~YvaAGS~dgsv~iW~v~tgK----lE~~l~~s~-s~~aI~s~~W~~sG~ 444 (459)
T KOG0288|consen 390 WTRVVFSPDGSYVAAGSADGSVYIWSVFTGK----LEKVLSLST-SNAAITSLSWNPSGS 444 (459)
T ss_pred cceeEECCCCceeeeccCCCcEEEEEccCce----EEEEeccCC-CCcceEEEEEcCCCc
Confidence 5788999999766777788999999999884 333344332 111334556666665
|
|
| >KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=82.67 E-value=68 Score=33.80 Aligned_cols=111 Identities=12% Similarity=0.069 Sum_probs=64.7
Q ss_pred cccceEEcCCCCEEEEEecCCeEEEEECCCCCCCccceeeeEEecccCcCCCccceEEEeCCCCeEEEEEeCcCC-----
Q 020019 46 FRECAKWDDSGRRFIVSFLDGGIGQVAVPDDYPPGTVLEEVTLVKDLELTGNGSLGLVLDHPRNRLLVVAADVFG----- 120 (332)
Q Consensus 46 ~pegia~d~~g~~~~~~~~~g~I~~vd~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~vd~~~g~l~v~~~~~~~----- 120 (332)
...++.++|..++.+++..++.|.++|.+..+. ++ ++-.+ ...-+-++.+|. .+||.+..|.+-
T Consensus 252 nVssvlfhp~q~lIlSnsEDksirVwDm~kRt~----v~--tfrre----ndRFW~laahP~-lNLfAAgHDsGm~VFkl 320 (1202)
T KOG0292|consen 252 NVSSVLFHPHQDLILSNSEDKSIRVWDMTKRTS----VQ--TFRRE----NDRFWILAAHPE-LNLFAAGHDSGMIVFKL 320 (1202)
T ss_pred CcceEEecCccceeEecCCCccEEEEecccccc----ee--eeecc----CCeEEEEEecCC-cceeeeecCCceEEEEE
Confidence 345788999988888888889999999875542 22 23211 113445555654 555555443210
Q ss_pred ----------------CccceEEEEECCCCcEEEEEecCCCCCCCCCccceEECCC-CcEEEEe
Q 020019 121 ----------------NKYSAVAAYDLSTWNRLFLTQLSGPSDGKSCADDVTVDAE-GNAYVTD 167 (332)
Q Consensus 121 ----------------~~~~~l~~~d~~~g~~~~~~~l~~~~~~~~~~ndiavd~d-G~lyvtd 167 (332)
-+...|..||+.+.+-.....+..++....-+..+...|. |.+.++.
T Consensus 321 eRErpa~~v~~n~LfYvkd~~i~~~d~~t~~d~~v~~lr~~g~~~~~~~smsYNpae~~vlics 384 (1202)
T KOG0292|consen 321 ERERPAYAVNGNGLFYVKDRFIRSYDLRTQKDTAVASLRRPGTLWQPPRSLSYNPAENAVLICS 384 (1202)
T ss_pred cccCceEEEcCCEEEEEccceEEeeeccccccceeEeccCCCcccCCcceeeeccccCeEEEEe
Confidence 0123566677776555555555444322345667888886 5556653
|
|
| >PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families | Back alignment and domain information |
|---|
Probab=82.26 E-value=44 Score=31.25 Aligned_cols=142 Identities=15% Similarity=0.194 Sum_probs=78.7
Q ss_pred cccceEEcCCCC-EEEEEec-C---CeEEEEECCCCCCCccceeeeEEec--ccCcCCCccceEEEe-CC-CCeEEEEEe
Q 020019 46 FRECAKWDDSGR-RFIVSFL-D---GGIGQVAVPDDYPPGTVLEEVTLVK--DLELTGNGSLGLVLD-HP-RNRLLVVAA 116 (332)
Q Consensus 46 ~pegia~d~~g~-~~~~~~~-~---g~I~~vd~~~~~~~~~~~~~~~~~~--~~~~~~~~~~gi~vd-~~-~g~l~v~~~ 116 (332)
+.-.+.|.++++ +++.-+. . -.|..++..++.. + .... .++.- .....+.+- ++ +..+|+...
T Consensus 185 yl~~v~W~~d~~~l~~~~~nR~q~~~~l~~~d~~tg~~-----~--~~~~e~~~~Wv-~~~~~~~~~~~~~~~~l~~s~~ 256 (353)
T PF00930_consen 185 YLTRVGWSPDGKRLWVQWLNRDQNRLDLVLCDASTGET-----R--VVLEETSDGWV-DVYDPPHFLGPDGNEFLWISER 256 (353)
T ss_dssp EEEEEEEEETTEEEEEEEEETTSTEEEEEEEEECTTTC-----E--EEEEEESSSSS-SSSSEEEE-TTTSSEEEEEEET
T ss_pred CcccceecCCCcEEEEEEcccCCCEEEEEEEECCCCce-----e--EEEEecCCcce-eeecccccccCCCCEEEEEEEc
Confidence 445678888888 5554422 1 2478888876653 1 1111 12221 112334432 32 245666664
Q ss_pred CcCCCccceEEEEECCCCcEEEEEecCCCCCCCCCc-cceEECCCC-cEEEEeCC----CCeEEEEcCC-CceEEEecCC
Q 020019 117 DVFGNKYSAVAAYDLSTWNRLFLTQLSGPSDGKSCA-DDVTVDAEG-NAYVTDVT----GSKIWKVGVK-GEFLSIISSP 189 (332)
Q Consensus 117 ~~~~~~~~~l~~~d~~~g~~~~~~~l~~~~~~~~~~-ndiavd~dG-~lyvtd~~----~~~I~~v~~~-g~~~~~~~~~ 189 (332)
+ +...|+.++..++... .+. .+.--. .-+.+|+++ .||++... ...||+++.+ +.....+...
T Consensus 257 ~----G~~hly~~~~~~~~~~---~lT---~G~~~V~~i~~~d~~~~~iyf~a~~~~p~~r~lY~v~~~~~~~~~~LT~~ 326 (353)
T PF00930_consen 257 D----GYRHLYLYDLDGGKPR---QLT---SGDWEVTSILGWDEDNNRIYFTANGDNPGERHLYRVSLDSGGEPKCLTCE 326 (353)
T ss_dssp T----SSEEEEEEETTSSEEE---ESS----SSS-EEEEEEEECTSSEEEEEESSGGTTSBEEEEEETTETTEEEESSTT
T ss_pred C----CCcEEEEEccccccee---ccc---cCceeecccceEcCCCCEEEEEecCCCCCceEEEEEEeCCCCCeEeccCC
Confidence 3 3567999999876643 332 112222 347788885 58988665 4589999988 6555443221
Q ss_pred CCCCcccccCccccC-eEEEccCceEEE
Q 020019 190 LFTPKEWYKNLVGLN-GIVYHPDGFLIV 216 (332)
Q Consensus 190 ~~~~p~~~~~~~~~n-Gi~~~~dG~Lyv 216 (332)
.+.+ .+.++|||..|+
T Consensus 327 -----------~~~~~~~~~Spdg~y~v 343 (353)
T PF00930_consen 327 -----------DGDHYSASFSPDGKYYV 343 (353)
T ss_dssp -----------SSTTEEEEE-TTSSEEE
T ss_pred -----------CCCceEEEECCCCCEEE
Confidence 2234 899999994444
|
Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: |
| >KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=82.18 E-value=50 Score=31.84 Aligned_cols=115 Identities=12% Similarity=0.108 Sum_probs=69.8
Q ss_pred ccceEEEeCCCCeEEEEEeCcCCCccceEEEEECCCCcEEEEEecCCCCCCC-------CCccceEECCCCcEEEEeCCC
Q 020019 98 GSLGLVLDHPRNRLLVVAADVFGNKYSAVAAYDLSTWNRLFLTQLSGPSDGK-------SCADDVTVDAEGNAYVTDVTG 170 (332)
Q Consensus 98 ~~~gi~vd~~~g~l~v~~~~~~~~~~~~l~~~d~~~g~~~~~~~l~~~~~~~-------~~~ndiavd~dG~lyvtd~~~ 170 (332)
++..+++-.+ ..||...+ .+.|+.|++...+++....+..+..+. .--+.+++=+.-+++.+-+.+
T Consensus 329 sidcv~~In~--~HfvsGSd-----nG~IaLWs~~KKkplf~~~~AHgv~~~~~~~~~~~Witsla~i~~sdL~asGS~~ 401 (479)
T KOG0299|consen 329 SIDCVAFIND--EHFVSGSD-----NGSIALWSLLKKKPLFTSRLAHGVIPELDPVNGNFWITSLAVIPGSDLLASGSWS 401 (479)
T ss_pred CeeeEEEecc--cceeeccC-----CceEEEeeecccCceeEeeccccccCCccccccccceeeeEecccCceEEecCCC
Confidence 5666776543 34666543 467888998877777666553221111 135677887776788887776
Q ss_pred Ce--EEEEcCCCceEEEecCCCCCCcccccCccccCeEEEccCc-eEEEEeCCCCeEEEE
Q 020019 171 SK--IWKVGVKGEFLSIISSPLFTPKEWYKNLVGLNGIVYHPDG-FLIVIHTFSGNLFKI 227 (332)
Q Consensus 171 ~~--I~~v~~~g~~~~~~~~~~~~~p~~~~~~~~~nGi~~~~dG-~Lyva~~~~~~i~~i 227 (332)
|. +|++...-+....+.+-.+ ....|.|+|+.+| .++++-....++-|+
T Consensus 402 G~vrLW~i~~g~r~i~~l~~ls~--------~GfVNsl~f~~sgk~ivagiGkEhRlGRW 453 (479)
T KOG0299|consen 402 GCVRLWKIEDGLRAINLLYSLSL--------VGFVNSLAFSNSGKRIVAGIGKEHRLGRW 453 (479)
T ss_pred CceEEEEecCCccccceeeeccc--------ccEEEEEEEccCCCEEEEeccccccccee
Confidence 64 6666654333333222111 1347999999999 788886655555333
|
|
| >KOG1188 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=81.88 E-value=44 Score=31.04 Aligned_cols=147 Identities=13% Similarity=0.159 Sum_probs=87.4
Q ss_pred CEEEEEecCCeEEEEECCCCCCCccceeeeEEecccCcCCCccceEEEeCC--CCeEEEEEeCcCCCccceEEEEECCCC
Q 020019 57 RRFIVSFLDGGIGQVAVPDDYPPGTVLEEVTLVKDLELTGNGSLGLVLDHP--RNRLLVVAADVFGNKYSAVAAYDLSTW 134 (332)
Q Consensus 57 ~~~~~~~~~g~I~~vd~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~vd~~--~g~l~v~~~~~~~~~~~~l~~~d~~~g 134 (332)
++..+++.+|.|.-+|+.+++. ++ .+-..|. ..+|+++-.. -+.++.|..+ +.|..||.++.
T Consensus 41 ~~vav~lSngsv~lyd~~tg~~----l~--~fk~~~~----~~N~vrf~~~ds~h~v~s~ssD------G~Vr~wD~Rs~ 104 (376)
T KOG1188|consen 41 TAVAVSLSNGSVRLYDKGTGQL----LE--EFKGPPA----TTNGVRFISCDSPHGVISCSSD------GTVRLWDIRSQ 104 (376)
T ss_pred eeEEEEecCCeEEEEeccchhh----hh--eecCCCC----cccceEEecCCCCCeeEEeccC------CeEEEEEeecc
Confidence 5666778899999999988763 33 2322222 4567777542 1456666543 56889999987
Q ss_pred cEEEEEecCCCCCCCCCccceEECC--CCcEEEEeCC----CCeEEEEcCCC--ceEEEecCCCCCCcccccCccccCeE
Q 020019 135 NRLFLTQLSGPSDGKSCADDVTVDA--EGNAYVTDVT----GSKIWKVGVKG--EFLSIISSPLFTPKEWYKNLVGLNGI 206 (332)
Q Consensus 135 ~~~~~~~l~~~~~~~~~~ndiavd~--dG~lyvtd~~----~~~I~~v~~~g--~~~~~~~~~~~~~p~~~~~~~~~nGi 206 (332)
....++...+ .+..-.+.+|. +++++.+.+. ...|+-+|..- +..+.+... ...-.+-|
T Consensus 105 ~e~a~~~~~~----~~~~~f~~ld~nck~~ii~~GtE~~~s~A~v~lwDvR~~qq~l~~~~eS---------H~DDVT~l 171 (376)
T KOG1188|consen 105 AESARISWTQ----QSGTPFICLDLNCKKNIIACGTELTRSDASVVLWDVRSEQQLLRQLNES---------HNDDVTQL 171 (376)
T ss_pred hhhhheeccC----CCCCcceEeeccCcCCeEEeccccccCceEEEEEEeccccchhhhhhhh---------ccCcceeE
Confidence 6555554421 11112345555 5677776542 34455555432 212212111 11224678
Q ss_pred EEccCc-eEEEEeCCCCeEEEEeCCCC
Q 020019 207 VYHPDG-FLIVIHTFSGNLFKIDIVDG 232 (332)
Q Consensus 207 ~~~~dG-~Lyva~~~~~~i~~id~~~~ 232 (332)
.|+|.. .|.++-+-.|-|-.||....
T Consensus 172 rFHP~~pnlLlSGSvDGLvnlfD~~~d 198 (376)
T KOG1188|consen 172 RFHPSDPNLLLSGSVDGLVNLFDTKKD 198 (376)
T ss_pred EecCCCCCeEEeecccceEEeeecCCC
Confidence 899999 99999888898888887743
|
|
| >PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins | Back alignment and domain information |
|---|
Probab=81.61 E-value=50 Score=34.62 Aligned_cols=155 Identities=14% Similarity=0.108 Sum_probs=84.9
Q ss_pred CccccceEEcCC-CCEEEEE-ecCCeEEEEECCCCCCCccceeeeEEecccCcCCCccceEE-------EeCCCCeEEEE
Q 020019 44 SFFRECAKWDDS-GRRFIVS-FLDGGIGQVAVPDDYPPGTVLEEVTLVKDLELTGNGSLGLV-------LDHPRNRLLVV 114 (332)
Q Consensus 44 ~~~pegia~d~~-g~~~~~~-~~~g~I~~vd~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~-------vd~~~g~l~v~ 114 (332)
.+.|..+-.+.+ .++++.+ .....||++|...|+ +++ +|--.-.. ....++ +++ ...|++
T Consensus 480 ~~~P~k~mL~~~d~~mil~~~~~~~~ly~mDLe~GK----VV~--eW~~~~~~---~v~~~~p~~K~aqlt~--e~tflG 548 (794)
T PF08553_consen 480 NFTPKKAMLHDQDRNMILLDPNNPNKLYKMDLERGK----VVE--EWKVHDDI---PVVDIAPDSKFAQLTN--EQTFLG 548 (794)
T ss_pred ccCcchhhhhccccceEeecCCCCCceEEEecCCCc----EEE--EeecCCCc---ceeEecccccccccCC--CceEEE
Confidence 346666555444 4566666 456789999999888 455 45421110 011221 123 233555
Q ss_pred EeCcCCCccceEEEEECCCC--cEEEEEecCCCCCCCCCccceEECCCCcEEEEeCCCCeEEEEcCCCce-EEEecCCCC
Q 020019 115 AADVFGNKYSAVAAYDLSTW--NRLFLTQLSGPSDGKSCADDVTVDAEGNAYVTDVTGSKIWKVGVKGEF-LSIISSPLF 191 (332)
Q Consensus 115 ~~~~~~~~~~~l~~~d~~~g--~~~~~~~l~~~~~~~~~~ndiavd~dG~lyvtd~~~~~I~~v~~~g~~-~~~~~~~~~ 191 (332)
.. .+.|+++|++-. +++. .+... .........+|.+.+|.|-|+. ..|.|.-+|.-|+. ...+ +.+
T Consensus 549 ls------~n~lfriDpR~~~~k~v~-~~~k~-Y~~~~~Fs~~aTt~~G~iavgs-~~G~IRLyd~~g~~AKT~l--p~l 617 (794)
T PF08553_consen 549 LS------DNSLFRIDPRLSGNKLVD-SQSKQ-YSSKNNFSCFATTEDGYIAVGS-NKGDIRLYDRLGKRAKTAL--PGL 617 (794)
T ss_pred EC------CCceEEeccCCCCCceee-ccccc-cccCCCceEEEecCCceEEEEe-CCCcEEeecccchhhhhcC--CCC
Confidence 43 357899998742 2221 11110 1123456678889999777764 56778778766642 1111 122
Q ss_pred CCcccccCccccCeEEEccCceEEEEeCCCCeEEEEeC
Q 020019 192 TPKEWYKNLVGLNGIVYHPDGFLIVIHTFSGNLFKIDI 229 (332)
Q Consensus 192 ~~p~~~~~~~~~nGi~~~~dG~Lyva~~~~~~i~~id~ 229 (332)
..| ..||.++.||...++...+ .|.-|+.
T Consensus 618 G~p--------I~~iDvt~DGkwilaTc~t-yLlLi~t 646 (794)
T PF08553_consen 618 GDP--------IIGIDVTADGKWILATCKT-YLLLIDT 646 (794)
T ss_pred CCC--------eeEEEecCCCcEEEEeecc-eEEEEEE
Confidence 222 4799999999444444433 4555654
|
Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ]. |
| >PRK13614 lipoprotein LpqB; Provisional | Back alignment and domain information |
|---|
Probab=81.38 E-value=64 Score=32.56 Aligned_cols=144 Identities=13% Similarity=0.120 Sum_probs=66.0
Q ss_pred ccceEECCCCcEEEEeCCCC-eEEEEcCCCceEEEecCCCCCCcccccCccccCeEEEccCceEEEEeCCC-CeEEEEeC
Q 020019 152 ADDVTVDAEGNAYVTDVTGS-KIWKVGVKGEFLSIISSPLFTPKEWYKNLVGLNGIVYHPDGFLIVIHTFS-GNLFKIDI 229 (332)
Q Consensus 152 ~ndiavd~dG~lyvtd~~~~-~I~~v~~~g~~~~~~~~~~~~~p~~~~~~~~~nGi~~~~dG~Lyva~~~~-~~i~~id~ 229 (332)
+...++.++|..+..-...+ .++...+.+....++....+..| .|+++|.+|....++ ++|.++..
T Consensus 345 ~~s~avS~~g~~~A~~~~~~~~l~~~~~g~~~~~~~~g~~Lt~P------------S~d~~g~vWtv~~g~~~~vv~~~~ 412 (573)
T PRK13614 345 PASPAESPVSQTVAFLNGSRTTLYTVSPGQPARALTSGSTLTRP------------SFSPQDWVWTAGPGGNGRIVAYRP 412 (573)
T ss_pred ccceeecCCCceEEEecCCCcEEEEecCCCcceeeecCCCccCC------------cccCCCCEEEeeCCCCceEEEEec
Confidence 33456666654322222222 45544444433333333334444 588889999887644 47888765
Q ss_pred CC-CCCccceeEEEEecCCCCC--CCCeEEEeCCCe--EEEE-eCCc-----eEEEEcCCCceEEEEEeeecCCCcccce
Q 020019 230 VD-GVGEGEEIKLIRVAGGPLS--FGDGLELLSPTK--LVVA-GNPS-----ARLVESSDGWETAAVVAKFSGPVHRLAT 298 (332)
Q Consensus 230 ~~-~~~~~~~~~~v~~~g~~~~--~pdGi~~~~dG~--l~va-~~~~-----~~~v~~~dg~~~~~~~~~~~~~~~~~pt 298 (332)
.+ +......+..+..+ .+. ....+.+.+||. ..+. ++.. ..+++..+| .-..+...+.......++
T Consensus 413 ~g~~~~~~~~~~~v~~~--~l~g~~I~~lrvSrDG~R~Avi~~~~g~~~V~va~V~R~~~G-~P~~L~~~~~~~~~~~~~ 489 (573)
T PRK13614 413 TGVAEGAQAPTVTLTAD--WLAGRTVKELRVSREGVRALVISEQNGKSRVQVAGIVRNEDG-TPRELTAPITLAADSDAD 489 (573)
T ss_pred CCCcccccccceeeccc--ccCCCeeEEEEECCCccEEEEEEEeCCccEEEEEEEEeCCCC-CeEEccCceecccCCCcc
Confidence 42 11100111122221 111 234566666665 2222 1221 123455666 322333222211123456
Q ss_pred EEEE-ECCeEEEE
Q 020019 299 AATV-KDGRVYLN 310 (332)
Q Consensus 299 ~va~-~~g~lyv~ 310 (332)
++.+ .++.|.|.
T Consensus 490 sl~W~~~~sl~V~ 502 (573)
T PRK13614 490 TGAWVGDSTVVVT 502 (573)
T ss_pred eeEEcCCCEEEEE
Confidence 7777 77777773
|
|
| >PF14298 DUF4374: Domain of unknown function (DUF4374) | Back alignment and domain information |
|---|
Probab=81.24 E-value=52 Score=31.80 Aligned_cols=125 Identities=15% Similarity=0.122 Sum_probs=67.0
Q ss_pred ccceEEcCCCCEEEEEec--------------CCeEEEEECCCCCCCccceeeeEEecccCcCC-CccceEEEeCCCCeE
Q 020019 47 RECAKWDDSGRRFIVSFL--------------DGGIGQVAVPDDYPPGTVLEEVTLVKDLELTG-NGSLGLVLDHPRNRL 111 (332)
Q Consensus 47 pegia~d~~g~~~~~~~~--------------~g~I~~vd~~~~~~~~~~~~~~~~~~~~~~~~-~~~~gi~vd~~~g~l 111 (332)
-.++..+.+|++|+.+.. ...|+||.....+++ .--+..-....+ ....++..-.+ +.
T Consensus 277 ~~~i~~~enGDvYvfS~s~a~~~~~~~~~stkPSGilRIk~G~teFD-----~~Yffnle~~sgg~~~~~~~yIG~-~k- 349 (435)
T PF14298_consen 277 YNGIWKDENGDVYVFSPSYAKTMSDGKSQSTKPSGILRIKKGTTEFD-----KSYFFNLEAKSGGYKFFRVWYIGN-NK- 349 (435)
T ss_pred eeeeeEeCCCCEEEEcCcccccccccccccCCccEEEEECCCCcccC-----cceEeeeecccCCcceEEEEEecC-CE-
Confidence 357888999999976621 124888875443321 101221111122 22334333332 44
Q ss_pred EEEEeCcC---C--CccceEEEEECCCCcEEEEEecCCCCCCCCCccceEECCCCcEEEEeC---C-CCeEEEEcCCC
Q 020019 112 LVVAADVF---G--NKYSAVAAYDLSTWNRLFLTQLSGPSDGKSCADDVTVDAEGNAYVTDV---T-GSKIWKVGVKG 180 (332)
Q Consensus 112 ~v~~~~~~---~--~~~~~l~~~d~~~g~~~~~~~l~~~~~~~~~~ndiavd~dG~lyvtd~---~-~~~I~~v~~~g 180 (332)
+++..... . ....++.++|..++++.+...+|.. ......+...+ .+|.+|+.-. + ...||++|+..
T Consensus 350 Fll~~~~~~~~~~~~~~~~laI~d~~~kt~t~V~glP~~-~is~~~~~~~v-e~G~aYi~Vtt~~g~~~~IY~iDp~T 425 (435)
T PF14298_consen 350 FLLQMYDKALTGTYSDAKKLAIFDVSNKTFTWVTGLPAD-LISGFGNAPYV-ENGKAYIPVTTEDGSDPYIYKIDPAT 425 (435)
T ss_pred EEEEEecccccccCCccceEEEEEccCceeEEeccCChh-hccccccceEe-eCCEEEEEEeecCCCceeEEEEcCcc
Confidence 33322111 1 2345788899999888877667432 11234444444 4688898533 2 36899999873
|
|
| >PLN00033 photosystem II stability/assembly factor; Provisional | Back alignment and domain information |
|---|
Probab=80.66 E-value=55 Score=31.39 Aligned_cols=103 Identities=11% Similarity=-0.001 Sum_probs=52.0
Q ss_pred cCeEEEccCceEEEEeCCCCeEEEEeCCCCCCcccee-EEEEecCCCCCCCCeEEEeCCCeEEEEeCCceEEEEcCCCce
Q 020019 203 LNGIVYHPDGFLIVIHTFSGNLFKIDIVDGVGEGEEI-KLIRVAGGPLSFGDGLELLSPTKLVVAGNPSARLVESSDGWE 281 (332)
Q Consensus 203 ~nGi~~~~dG~Lyva~~~~~~i~~id~~~~~~~~~~~-~~v~~~g~~~~~pdGi~~~~dG~l~va~~~~~~~v~~~dg~~ 281 (332)
..++...+||.+++.-. .+.+++-.-... .. +.+..+ .-....++.+.++|.+|++.+....+....+| .
T Consensus 241 f~~v~~~~dG~~~~vg~-~G~~~~s~d~G~-----~~W~~~~~~--~~~~l~~v~~~~dg~l~l~g~~G~l~~S~d~G-~ 311 (398)
T PLN00033 241 FSTVNRSPDGDYVAVSS-RGNFYLTWEPGQ-----PYWQPHNRA--SARRIQNMGWRADGGLWLLTRGGGLYVSKGTG-L 311 (398)
T ss_pred eeeEEEcCCCCEEEEEC-CccEEEecCCCC-----cceEEecCC--CccceeeeeEcCCCCEEEEeCCceEEEecCCC-C
Confidence 35567778885555443 345665443322 11 323332 11345678888999999998775444444455 2
Q ss_pred EE---EEEeeecCCCcccceEEEE-ECCeEEEEEecC
Q 020019 282 TA---AVVAKFSGPVHRLATAATV-KDGRVYLNHMLG 314 (332)
Q Consensus 282 ~~---~~~~~~~~~~~~~pt~va~-~~g~lyv~~~~g 314 (332)
.- +..+..........+.+.+ .++.+|++...|
T Consensus 312 ~~~~~~f~~~~~~~~~~~l~~v~~~~d~~~~a~G~~G 348 (398)
T PLN00033 312 TEEDFDFEEADIKSRGFGILDVGYRSKKEAWAAGGSG 348 (398)
T ss_pred cccccceeecccCCCCcceEEEEEcCCCcEEEEECCC
Confidence 21 1121100001112355555 566677655444
|
|
| >PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families | Back alignment and domain information |
|---|
Probab=80.60 E-value=52 Score=31.26 Aligned_cols=165 Identities=17% Similarity=0.165 Sum_probs=84.8
Q ss_pred cceEEcCCCCEEEEE-e--cC-CeEEEEECCCCCCCccceeeeEEecccCcCCCcc-ceEEEeCCCCeEEEEEeCcCCCc
Q 020019 48 ECAKWDDSGRRFIVS-F--LD-GGIGQVAVPDDYPPGTVLEEVTLVKDLELTGNGS-LGLVLDHPRNRLLVVAADVFGNK 122 (332)
Q Consensus 48 egia~d~~g~~~~~~-~--~~-g~I~~vd~~~~~~~~~~~~~~~~~~~~~~~~~~~-~gi~vd~~~g~l~v~~~~~~~~~ 122 (332)
-++..+++++.++.. . .+ ..++.++..++..+ -.+...+.. ... +. .-+... ++.+|+..+... .
T Consensus 230 ~~~~~s~d~~~l~i~~~~~~~~s~v~~~d~~~~~~~--~~~~~~l~~--~~~--~~~~~v~~~--~~~~yi~Tn~~a--~ 299 (414)
T PF02897_consen 230 VSVSRSKDGRYLFISSSSGTSESEVYLLDLDDGGSP--DAKPKLLSP--RED--GVEYYVDHH--GDRLYILTNDDA--P 299 (414)
T ss_dssp EEEEE-TTSSEEEEEEESSSSEEEEEEEECCCTTTS--S-SEEEEEE--SSS--S-EEEEEEE--TTEEEEEE-TT---T
T ss_pred EEEEecCcccEEEEEEEccccCCeEEEEeccccCCC--cCCcEEEeC--CCC--ceEEEEEcc--CCEEEEeeCCCC--C
Confidence 367788999876654 2 23 57999998764000 001112221 111 22 222222 378888776432 3
Q ss_pred cceEEEEECCCCcE-EEEEecCCCCCCCCCccceEECCCCcEEEEeC--CCCeEEEEcCC-CceEEEecCCCCCCccccc
Q 020019 123 YSAVAAYDLSTWNR-LFLTQLSGPSDGKSCADDVTVDAEGNAYVTDV--TGSKIWKVGVK-GEFLSIISSPLFTPKEWYK 198 (332)
Q Consensus 123 ~~~l~~~d~~~g~~-~~~~~l~~~~~~~~~~ndiavd~dG~lyvtd~--~~~~I~~v~~~-g~~~~~~~~~~~~~p~~~~ 198 (332)
..+|+.++++.... .+...+. +........++.+..+. |++... ...+|..++.+ ++.......+.
T Consensus 300 ~~~l~~~~l~~~~~~~~~~~l~-~~~~~~~l~~~~~~~~~-Lvl~~~~~~~~~l~v~~~~~~~~~~~~~~p~-------- 369 (414)
T PF02897_consen 300 NGRLVAVDLADPSPAEWWTVLI-PEDEDVSLEDVSLFKDY-LVLSYRENGSSRLRVYDLDDGKESREIPLPE-------- 369 (414)
T ss_dssp T-EEEEEETTSTSGGGEEEEEE---SSSEEEEEEEEETTE-EEEEEEETTEEEEEEEETT-TEEEEEEESSS--------
T ss_pred CcEEEEecccccccccceeEEc-CCCCceeEEEEEEECCE-EEEEEEECCccEEEEEECCCCcEEeeecCCc--------
Confidence 56899999876542 1111221 12222456777776554 665544 44578888888 66544332211
Q ss_pred CccccCeEEEccCc-eEEEEeCC---CCeEEEEeCCCCC
Q 020019 199 NLVGLNGIVYHPDG-FLIVIHTF---SGNLFKIDIVDGV 233 (332)
Q Consensus 199 ~~~~~nGi~~~~dG-~Lyva~~~---~~~i~~id~~~~~ 233 (332)
.....++..++++ .+++.-+. ..++|++|+.+++
T Consensus 370 -~g~v~~~~~~~~~~~~~~~~ss~~~P~~~y~~d~~t~~ 407 (414)
T PF02897_consen 370 -AGSVSGVSGDFDSDELRFSYSSFTTPPTVYRYDLATGE 407 (414)
T ss_dssp -SSEEEEEES-TT-SEEEEEEEETTEEEEEEEEETTTTC
T ss_pred -ceEEeccCCCCCCCEEEEEEeCCCCCCEEEEEECCCCC
Confidence 1122455555566 66655442 4579999999883
|
Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A .... |
| >PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins | Back alignment and domain information |
|---|
Probab=80.36 E-value=81 Score=33.12 Aligned_cols=148 Identities=13% Similarity=0.176 Sum_probs=81.2
Q ss_pred ccceEEEeCCCCeEEEEEeCcCCCccceEEEEECCCCcEEEEEecCCCCCCCCCccceEECC------CCcEEEEeCCCC
Q 020019 98 GSLGLVLDHPRNRLLVVAADVFGNKYSAVAAYDLSTWNRLFLTQLSGPSDGKSCADDVTVDA------EGNAYVTDVTGS 171 (332)
Q Consensus 98 ~~~gi~vd~~~g~l~v~~~~~~~~~~~~l~~~d~~~g~~~~~~~l~~~~~~~~~~ndiavd~------dG~lyvtd~~~~ 171 (332)
.|.-+.++..+..+++.+.. ...+|+.+|++.|+++..+.+.. . .-..+++-+. +-..|+.= ..+
T Consensus 482 ~P~k~mL~~~d~~mil~~~~----~~~~ly~mDLe~GKVV~eW~~~~--~--~~v~~~~p~~K~aqlt~e~tflGl-s~n 552 (794)
T PF08553_consen 482 TPKKAMLHDQDRNMILLDPN----NPNKLYKMDLERGKVVEEWKVHD--D--IPVVDIAPDSKFAQLTNEQTFLGL-SDN 552 (794)
T ss_pred CcchhhhhccccceEeecCC----CCCceEEEecCCCcEEEEeecCC--C--cceeEecccccccccCCCceEEEE-CCC
Confidence 35444444433555555532 24679999999999988887732 1 1123333321 11344443 357
Q ss_pred eEEEEcCC--CceEEEecCCCCCCcccccCccccCeEEEccCceEEEEeCCCCeEEEEeCCCCCCccceeEEEEecCCCC
Q 020019 172 KIWKVGVK--GEFLSIISSPLFTPKEWYKNLVGLNGIVYHPDGFLIVIHTFSGNLFKIDIVDGVGEGEEIKLIRVAGGPL 249 (332)
Q Consensus 172 ~I~~v~~~--g~~~~~~~~~~~~~p~~~~~~~~~nGi~~~~dG~Lyva~~~~~~i~~id~~~~~~~~~~~~~v~~~g~~~ 249 (332)
+++++||. |.....-....+. ....-..++-+.+|+|.|+. ..|.|.-++.. ++- ....++.-|
T Consensus 553 ~lfriDpR~~~~k~v~~~~k~Y~------~~~~Fs~~aTt~~G~iavgs-~~G~IRLyd~~-g~~---AKT~lp~lG--- 618 (794)
T PF08553_consen 553 SLFRIDPRLSGNKLVDSQSKQYS------SKNNFSCFATTEDGYIAVGS-NKGDIRLYDRL-GKR---AKTALPGLG--- 618 (794)
T ss_pred ceEEeccCCCCCceeeccccccc------cCCCceEEEecCCceEEEEe-CCCcEEeeccc-chh---hhhcCCCCC---
Confidence 89999986 3212111111121 11234578889999999886 46667666643 211 111122111
Q ss_pred CCCCeEEEeCCCeEEEEeC
Q 020019 250 SFGDGLELLSPTKLVVAGN 268 (332)
Q Consensus 250 ~~pdGi~~~~dG~l~va~~ 268 (332)
.-.-||.+..||+..++.-
T Consensus 619 ~pI~~iDvt~DGkwilaTc 637 (794)
T PF08553_consen 619 DPIIGIDVTADGKWILATC 637 (794)
T ss_pred CCeeEEEecCCCcEEEEee
Confidence 1235899999999888863
|
Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ]. |
| >PF14339 DUF4394: Domain of unknown function (DUF4394) | Back alignment and domain information |
|---|
Probab=80.04 E-value=42 Score=29.63 Aligned_cols=127 Identities=13% Similarity=0.117 Sum_probs=75.1
Q ss_pred CccceEEEeCCCCeEEEEEeCcCCCccceEEEEECCCCcEEEE--EecCCCCCCCCCccceEECCC-CcEEEEeCCCCeE
Q 020019 97 NGSLGLVLDHPRNRLLVVAADVFGNKYSAVAAYDLSTWNRLFL--TQLSGPSDGKSCADDVTVDAE-GNAYVTDVTGSKI 173 (332)
Q Consensus 97 ~~~~gi~vd~~~g~l~v~~~~~~~~~~~~l~~~d~~~g~~~~~--~~l~~~~~~~~~~ndiavd~d-G~lyvtd~~~~~I 173 (332)
....||-+-|.+|.||.... .++|+.+|+.+|..... ..+..+- ....-++-+.|- .+|.|... .++-
T Consensus 27 e~l~GID~Rpa~G~LYgl~~------~g~lYtIn~~tG~aT~vg~s~~~~al--~g~~~gvDFNP~aDRlRvvs~-~GqN 97 (236)
T PF14339_consen 27 ESLVGIDFRPANGQLYGLGS------TGRLYTINPATGAATPVGASPLTVAL--SGTAFGVDFNPAADRLRVVSN-TGQN 97 (236)
T ss_pred CeEEEEEeecCCCCEEEEeC------CCcEEEEECCCCeEEEeecccccccc--cCceEEEecCcccCcEEEEcc-CCcE
Confidence 36789999999999998854 46899999999986544 2232111 122556777775 57876533 6777
Q ss_pred EEEcCC-CceEEEecCCCCCCccccc-CccccCeEEEccC------c-eEEEEeCCCCeEEEEe-CCCC
Q 020019 174 WKVGVK-GEFLSIISSPLFTPKEWYK-NLVGLNGIVYHPD------G-FLIVIHTFSGNLFKID-IVDG 232 (332)
Q Consensus 174 ~~v~~~-g~~~~~~~~~~~~~p~~~~-~~~~~nGi~~~~d------G-~Lyva~~~~~~i~~id-~~~~ 232 (332)
+|++++ |.....-.+-.+....... ......+.++... . +||--|...+++++-. +.++
T Consensus 98 lR~npdtGav~~~Dg~L~y~~gd~~~G~~p~v~aaAYTNs~~g~~t~TtLy~ID~~~~~Lv~Q~ppN~G 166 (236)
T PF14339_consen 98 LRLNPDTGAVTIVDGNLAYAAGDMNAGTTPGVTAAAYTNSFAGATTSTTLYDIDTTLDALVTQNPPNDG 166 (236)
T ss_pred EEECCCCCCceeccCccccCCCccccCCCCceEEEEEecccCCCccceEEEEEecCCCeEEEecCCCCC
Confidence 888887 4422211111111000000 0122345555433 5 7899999888888874 4455
|
|
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
No homologous structure with e-value below 0.005
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >2p9w_A MAL S 1 allergenic protein; beta propeller; 1.35A {Malassezia sympodialis} Length = 334 | Back alignment and structure |
|---|
Score = 154 bits (389), Expect = 2e-44
Identities = 51/305 (16%), Positives = 85/305 (27%), Gaps = 41/305 (13%)
Query: 36 HVYHYHSSSFFRECAKWDDSGRRFIVSFLDGG-IGQVAVPDDYPPGTVLEEVTLVKDLEL 94
+ E +D + + F S L G I V++ + D E
Sbjct: 4 DQIDVKVKNLTPEDTIYDRTRQVFYQSNLYKGRIEVYNPKTQSHFNVVIDGASSNGDGEQ 63
Query: 95 TGNGSLGLVLDHPRNRLLVV-----AADVFGNKYSA---VAAYDL---STWNRLFLTQLS 143
+G L L+ RL V + + +++L ++
Sbjct: 64 QMSG-LSLLTHDNSKRLFAVMKNAKSFNFADQSSHGASSFHSFNLPLSENSKPVWSVNFE 122
Query: 144 GPSDGKSCAD--------DVTVDAEGNAYVTDVTG-SKIWKVGVKGEFLSIISSPLFTPK 194
D D +GN+YV G I +V G+ S
Sbjct: 123 KVQDEFEKKAGKRPFGVVQSAQDRDGNSYVAFALGMPAIARVSADGKT----VSTFAWES 178
Query: 195 EWYKNLVGLNGIVYHPDGFLIVIHTFSGNLFKIDIVDGVGEGEEIKLIRVAGGPLSFGDG 254
G +GI + P ++ L D+ E +K+ G G
Sbjct: 179 GNGGQRPGYSGITFDPHSNKLIAFGGPRALTAFDVSKPYAWPEPVKI----NGDFGTLSG 234
Query: 255 LELLSP------TKLVVAGNPSARLVESSDGWETAAVVAKFSGPVH--RLATAATVKDG- 305
E + + LV A P A S D W++A + + A G
Sbjct: 235 TEKIVTVPVGNESVLVGARAPYAISFRSWDNWKSANIKKTKRSELQNSGFTAVADYYQGS 294
Query: 306 --RVY 308
+Y
Sbjct: 295 EQGLY 299
|
| >3sre_A PON1, serum paraoxonase; directed evolution, 6-blades-propeller fold, hydrolase; HET: LMT; 1.99A {Artificial gene} PDB: 1v04_A* 3srg_A* Length = 355 | Back alignment and structure |
|---|
Score = 63.6 bits (154), Expect = 1e-11
Identities = 48/346 (13%), Positives = 99/346 (28%), Gaps = 44/346 (12%)
Query: 1 MALSLCSAKSLLFFFVISAIPVAYIISQERANPATHVYHYHSSSFFRECAK---WDDSGR 57
AL+L L F + R + + + ++ +G
Sbjct: 5 TALTLLGM--GLALFDRQKSSFQTRFNVHREVTPVELPNCNLVKGIDNGSEDLEILPNGL 62
Query: 58 RFIVSFLDGGIGQVAVPDDYPPGTVL-----EEVTLVKDLELTGNGS---------LGLV 103
FI S L + D G +L E+ V +LE+ GN +
Sbjct: 63 AFISSGLK--YPGIMSFDPDKSGKILLMDLNEKEPAVSELEIIGNTLDISSFNPHGISTF 120
Query: 104 LDHPRNRLLVVAADVFGNKYSAVAAYDLSTWNRLFLTQLSGPSDGKSCADDVTVDAEGNA 163
+D L+V + V + + L L + +D+ +
Sbjct: 121 IDDDNTVYLLVVNHPGSSSTVEVFKFQEEEKSLLHLKTIRHKLLP--SVNDIVAVGPEHF 178
Query: 164 YVTDVTGSKIWKVGVKGEFLSIISSPLF-----TPKEWYKNLVGLNGIVYHPDG-FLIVI 217
Y T+ + L + S + + + NGI PDG ++ +
Sbjct: 179 YATNDHYFIDPYLKSWEMHLGLAWSFVTYYSPNDVRVVAEGFDFANGINISPDGKYVYIA 238
Query: 218 HTFSGNLFKIDIVDGVGEGEEIKLIRVAGGP--------------LSFGDGLELLSPTKL 263
+ + + ++++ +G+ +
Sbjct: 239 ELLAHKIHVYEK-HANWTLTPLRVLSFDTLVDNISVDPVTGDLWVGCHPNGMRIFFYDAE 297
Query: 264 VVAGNPSARLVESSDGWETAAVVAKFSGPVHRLATAATVKDGRVYL 309
G+ R+ + VV +G V + +T A V G++ +
Sbjct: 298 NPPGSEVLRIQDILSEEPKVTVVYAENGTVLQGSTVAAVYKGKLLI 343
|
| >2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A Length = 333 | Back alignment and structure |
|---|
Score = 50.9 bits (122), Expect = 2e-07
Identities = 35/224 (15%), Positives = 62/224 (27%), Gaps = 35/224 (15%)
Query: 41 HSSSFFRECAKWDDSGRRFIVSFLDGGIGQVAVPDDYPPGTVLEEVTLVKDLELTGNGSL 100
E +D G+ F++ +G I ++ +
Sbjct: 41 SKKGLQLEGLNFDRQGQLFLLDVFEGNIFKINPETKEIKRPFVSH----------KANPA 90
Query: 101 GLVLDHPRNRLLVVAADVFGNKYSAVAAYDLSTWNRLFLTQLSGPSDGKSCADDVTVDAE 160
+ + RL V F + + A + L + C DD+ D++
Sbjct: 91 AIKIH-KDGRLFVCYLGDFKST-GGIFAATENG---DNLQDIIEDLSTAYCIDDMVFDSK 145
Query: 161 GNAYVTDVTGSK------IWKVGVKGEFLSIISSPLFTPKEWYKNLVGLNGIVYHPDG-F 213
G Y TD G ++ V ++ I + NGI D
Sbjct: 146 GGFYFTDFRGYSTNPLGGVYYVSPDFRTVTPIIQNISVA----------NGIALSTDEKV 195
Query: 214 LIVIHTFSGNLFKIDIVD--GVGEGEEIKLIRVAGGPLSFGDGL 255
L V T + L +I + D + + G D
Sbjct: 196 LWVTETTANRLHRIALEDDGVTIQPFGATIPYYFTGHEGP-DSC 238
|
| >2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A* Length = 299 | Back alignment and structure |
|---|
Score = 49.2 bits (118), Expect = 6e-07
Identities = 33/259 (12%), Positives = 74/259 (28%), Gaps = 45/259 (17%)
Query: 53 DDSGRRFIVSFLDGGIGQVAVPDDYPPGTVLEEVTLVKDLELTGNGSLGLVLDHPRNRLL 112
D G+ +I I + + E L + L + +
Sbjct: 23 SDKGKVWITQHKANMISCIN------LDGKITEYPL----PTPDAKVMCLTIS-SDGEVW 71
Query: 113 VVAADVFGNKYSAVAAYDLSTWNRLFLTQLSGPSDGKSCADDVTVDAEGNAYVTDVTGSK 172
+ NK + + + + P+ + +T G+ + T++ G++
Sbjct: 72 F--TENAANK---IGRITKKG----IIKEYTLPNPDSA-PYGITEGPNGDIWFTEMNGNR 121
Query: 173 IWKVGVKGEFLSI-ISSPLFTPKEWYKNLVGLNGIVYHPDGFLIVIHTFSGNLFKIDIVD 231
I ++ G+ + + P + I D L + + +I
Sbjct: 122 IGRITDDGKIREYELPNKGSYP----------SFITLGSDNALWFTENQNNAIGRITE-- 169
Query: 232 GVGEGEEIKLIRVAGGPLSFGDGLELLSPTKLVVA--GNPSARLVESSDGWETAAVVAKF 289
G+ E K+ A GP G+ + L + +S +
Sbjct: 170 -SGDITEFKIPTPASGP----VGITKGNDDALWFVEIIGNKIGRITTSGEITEFKIPTPN 224
Query: 290 SGPVHRLATAATVKDGRVY 308
+ P H + A ++
Sbjct: 225 ARP-HAITAGA---GIDLW 239
|
| >2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A* Length = 299 | Back alignment and structure |
|---|
Score = 48.1 bits (115), Expect = 1e-06
Identities = 25/175 (14%), Positives = 51/175 (29%), Gaps = 37/175 (21%)
Query: 140 TQLSGPSDGKSCADDVTVDAEGNAYVTDVTGSKIWKVGVKGEFLSI-ISSPLFTPKEWYK 198
Q +GP +TV +G ++T + I + + G+ + +P
Sbjct: 12 NQDTGPYG-------ITVSDKGKVWITQHKANMISCINLDGKITEYPLPTPDAKV----- 59
Query: 199 NLVGLNGIVYHPDGFLIVIHTFSGNLFKIDIVDGVGEGEEIKLIRVAGGPLSF---GDGL 255
+ DG + + + +I G +E L P +G
Sbjct: 60 -----MCLTISSDGEVWFTENAANKIGRI---TKKGIIKEYTLPNPDSAPYGITEGPNG- 110
Query: 256 ELLSPTKLVVAGNPSARLVE-SSDG-WETAAVVAKFSGPVHRLATAATVKDGRVY 308
+ R+ + DG + K S P + + D ++
Sbjct: 111 ------DIWFTEMNGNRIGRITDDGKIREYELPNKGSYP-SFITLGS---DNALW 155
|
| >2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A* Length = 299 | Back alignment and structure |
|---|
Score = 41.5 bits (98), Expect = 2e-04
Identities = 23/185 (12%), Positives = 54/185 (29%), Gaps = 34/185 (18%)
Query: 52 WDDSGRRFIVSFLDGGIGQVAVPDDYPPGTVLEEVTLVKDLELTGNGSLGLVLDHPRNRL 111
+ + IG+ + E + +G +G+ + L
Sbjct: 148 LGSDNALWFTENQNNAIGR------ITESGDITEFKI----PTPASGPVGITKG-NDDAL 196
Query: 112 LVVAADVFGNKYSAVAAYDLSTWNRLFLTQLSGPSDGKSCADDVTVDAEGNAYVTDVTGS 171
++ GNK + S +T+ P+ + +T A + + T+ +
Sbjct: 197 WF--VEIIGNK---IGRITTSGE----ITEFKIPTPN-ARPHAITAGAGIDLWFTEWGAN 246
Query: 172 KIWKVGVKGEFLSI-ISSPLFTPKEWYKNLVGLNGIVYHPDGFLIVIHTFSGNLFKIDIV 230
KI ++ I P +GI + + + + K+ ++
Sbjct: 247 KIGRLTSNNIIEEYPIQIKSAEP----------HGICFDGETIWFAMEC--DKIGKLTLI 294
Query: 231 DGVGE 235
E
Sbjct: 295 KDNME 299
|
| >2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii} Length = 300 | Back alignment and structure |
|---|
Score = 49.2 bits (118), Expect = 7e-07
Identities = 32/218 (14%), Positives = 65/218 (29%), Gaps = 39/218 (17%)
Query: 96 GNGSLGLVLDHPRNRLLVVAADVFGNKYSAVAAYDLSTWNRLFLTQLSGPSDGKSCADDV 155
+G G+ ++ NK +++ D S + + P+ +
Sbjct: 19 DSGPYGITSS-EDGKVWF--TQHKANK---ISSLDQSG----RIKEFEVPTPDAK-VMCL 67
Query: 156 TVDAEGNAYVTDVTGSKIWKVGVKGEFLSIISSPLFTPKEWYKNLVGLNGIVYHPDGFLI 215
V + G+ + T+ +KI K+ KG F + G GI +G +
Sbjct: 68 IVSSLGDIWFTENGANKIGKLSKKGGFTEYPLPQPDS---------GPYGITEGLNGDIW 118
Query: 216 VIHTFSGNLFKIDIVDGVGEGEEIKLIRVAGGPLSF---GDGLELLSPTKLVVAGNPSAR 272
+ K+ G E L P D L N +
Sbjct: 119 FTQLNGDRIGKL---TADGTIYEYDLPNKGSYPAFITLGSDN-------ALWFTENQNNS 168
Query: 273 L--VESSDGWETAAVVAKFSGPVHRLATAATVKDGRVY 308
+ + ++ E + + P + + DG ++
Sbjct: 169 IGRITNTGKLEEYPLPTNAAAP-VGITSGN---DGALW 202
|
| >2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii} Length = 300 | Back alignment and structure |
|---|
Score = 44.6 bits (106), Expect = 2e-05
Identities = 27/179 (15%), Positives = 55/179 (30%), Gaps = 36/179 (20%)
Query: 53 DDSGRRFIVSFLDGGIGQVAVPDDYPPGTVLEEVTLVKDLELTGNGSLGLVLDHPRNRLL 112
+G + IG++ GT+ E DL G+ + L N L
Sbjct: 112 GLNGDIWFTQLNGDRIGKLT-----ADGTIYE-----YDLPNKGSYPAFITLG-SDNALW 160
Query: 113 VVAADVFGNKYSAVAAYDLSTWNRLFL--TQLSGPSDGKSCADDVTVDAEGNAYVTDVTG 170
+ N ++ + + T + P +T +G + ++ G
Sbjct: 161 F--TENQNN---SIGRITNTGKLEEYPLPTNAAAP-------VGITSGNDGALWFVEIMG 208
Query: 171 SKIWKVGVKGEFLSI-ISSPLFTPKEWYKNLVGLNGIVYHPDGFLIVIHTFSGNLFKID 228
+KI ++ GE I +P P + I + + + + +I
Sbjct: 209 NKIGRITTTGEISEYDIPTPNARP----------HAITAGKNSEIWFTEWGANQIGRIT 257
|
| >2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii} Length = 300 | Back alignment and structure |
|---|
Score = 42.7 bits (101), Expect = 9e-05
Identities = 21/179 (11%), Positives = 53/179 (29%), Gaps = 34/179 (18%)
Query: 52 WDDSGRRFIVSFLDGGIGQVAVPDDYPPGTVLEEVTLVKDLELTGNGSLGLVLDHPRNRL 111
+ + IG++ LEE L + +G+ L
Sbjct: 153 LGSDNALWFTENQNNSIGRI------TNTGKLEEYPLPTN----AAAPVGITSG-NDGAL 201
Query: 112 LVVAADVFGNKYSAVAAYDLSTWNRLFLTQLSGPSDGKSCADDVTVDAEGNAYVTDVTGS 171
++ GNK + + +++ P+ + +T + T+ +
Sbjct: 202 WF--VEIMGNK---IGRITTTGE----ISEYDIPTPN-ARPHAITAGKNSEIWFTEWGAN 251
Query: 172 KIWKVGVKGEFLSI-ISSPLFTPKEWYKNLVGLNGIVYHPDGFLIVIHTFSGNLFKIDI 229
+I ++ + + P +GI + DG + + K+++
Sbjct: 252 QIGRITNDNTIQEYQLQTENAEP----------HGITFGKDGSVWF--ALKCKIGKLNL 298
|
| >3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A Length = 376 | Back alignment and structure |
|---|
Score = 45.6 bits (108), Expect = 1e-05
Identities = 50/265 (18%), Positives = 84/265 (31%), Gaps = 63/265 (23%)
Query: 75 DDYPPGTVLEEVTLVKDLELTGNGSLGLVLDHPRNRLLVVAAD---VFGNKYSAVAAYDL 131
+D + L V + S+G + + + L AD ++ V A +
Sbjct: 11 EDVVKMSPLPTVENQFTPTTAWSTSVGSGIGNFYSNLHPALADNVVYAADRAGLVKALNA 70
Query: 132 STWNRLFLTQLSGPSDGKSCADD-----VTVDAEGNAYVTDV----------TGSKIWKV 176
++ L+ S VTV G+ Y+ G+ W+
Sbjct: 71 DDGKEIWSVSLAEKDGWFSKEPALLSGGVTVS-GGHVYIGSEKAQVYALNTSDGTVAWQT 129
Query: 177 GVKGEFLSIISSPLFTPKEWYKNLVGLNGIVYHPDGFLIVIHTFSGNLFKIDIVDG---- 232
V GE +S P+ + +G+V IHT +G L ++ DG
Sbjct: 130 KVAGE---ALSRPVVS-----------DGLVL--------IHTSNGQLQALNEADGAVKW 167
Query: 233 -VGEGEEIKLIRVAGGPLSFGDGLELLSPTKLVVAGNPSARL--VESSDG---WETAAVV 286
V +R P + V G + R+ V G W+
Sbjct: 168 TVNLDMPSLSLRGESAPTTAFGA---------AVVGGDNGRVSAVLMEQGQMIWQQRISQ 218
Query: 287 AKFSGPVHRLA---TAATVKDGRVY 308
A S + RL+ T V +G V+
Sbjct: 219 ATGSTEIDRLSDVDTTPVVVNGVVF 243
|
| >2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3 Length = 306 | Back alignment and structure |
|---|
Score = 45.3 bits (107), Expect = 1e-05
Identities = 17/134 (12%), Positives = 47/134 (35%), Gaps = 15/134 (11%)
Query: 154 DVTVDAEGNAYVTDVTGSKIWKVGVKGEFLSIISSPLFTPKEWYKNLVGLNGIVYHPDGF 213
++ +G +VT+ +I + G + ++G+ + +G
Sbjct: 36 NLASAPDGTIFVTNHEVGEIVSITPDGNQQIHATVE-----------GKVSGLAFTSNGD 84
Query: 214 LIVIHTFSGNLFKIDIVDGVGEGEEIKLIRVAGGPLSFGDGLELLSPTKLVVAGNPSARL 273
L+ + ++ + +V G E + + A +G+ LS T+ + A + +
Sbjct: 85 LVATGWNADSIPVVSLVKSDGTVETLLTLPDAIFL----NGITPLSDTQYLTADSYRGAI 140
Query: 274 VESSDGWETAAVVA 287
+ ++
Sbjct: 141 WLIDVVQPSGSIWL 154
|
| >2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3 Length = 306 | Back alignment and structure |
|---|
Score = 40.3 bits (94), Expect = 5e-04
Identities = 8/82 (9%), Positives = 19/82 (23%), Gaps = 8/82 (9%)
Query: 113 VVAADVFGNKYSAVA-AYDLSTWNRLFLTQLSGPSDGKSCADDVTVDAEGNAYVTDVTGS 171
+ ++ + + + DD D EGN Y +
Sbjct: 181 LYVSNTEKMLLLRIPVDSTDKPGEPEIFVEQTNI-------DDFAFDVEGNLYGATHIYN 233
Query: 172 KIWKVGVKGEFLSIISSPLFTP 193
+ ++ I +
Sbjct: 234 SVVRIAPDRSTTIIAQAEQGVI 255
|
| >1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ... Length = 314 | Back alignment and structure |
|---|
Score = 40.9 bits (96), Expect = 4e-04
Identities = 40/227 (17%), Positives = 64/227 (28%), Gaps = 31/227 (13%)
Query: 46 FRECAKWDDSGRRFIVSFLDGGIGQVAVPDD----YPPGTVLEEVTLVKDLELTGNGSLG 101
E +D +G +IV+ + P T + V ++ G G
Sbjct: 19 GAEGPVFDKNGDFYIVA---PEVEVNGKPAGEILRIDLKTGKKTVICKPEVNGYGGIPAG 75
Query: 102 LVLDHPRNRLLVVAADVFGNKYSAVAAYDLSTWNRLFLTQLSGPSDGK---SCADDVTVD 158
D L VA + F S+G+ C +D D
Sbjct: 76 CQCD-RDANQLFVAD-----MRLGLLVVQTDG---TFEEIAKKDSEGRRMQGC-NDCAFD 125
Query: 159 AEGNAYVTDVTGSKIWKVGVKGEFLSIIS----SPLFTPKEWYKNLVGLNGIVYHPDG-- 212
EGN ++T G + S + + NGI
Sbjct: 126 YEGNLWITAPAGEVAPADYTRSMQEKFGSIYCFTTDGQMIQVDTAFQFPNGIAVRHMNDG 185
Query: 213 ---FLIVIHTFSGNLFKIDIV-DGVGEGEEIKLIRVAGGPLSFGDGL 255
LIV T + L+ DI E +++ + G DG+
Sbjct: 186 RPYQLIVAETPTKKLWSYDIKGPAKIENKKV-WGHIPGTHEGGADGM 231
|
| >1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A Length = 270 | Back alignment and structure |
|---|
Score = 40.3 bits (95), Expect = 4e-04
Identities = 24/172 (13%), Positives = 54/172 (31%), Gaps = 31/172 (18%)
Query: 140 TQLSGPSDGKSCADDVTVDAEGNAYVTDVTGSKIWKVGVKGEFLSIISSP-LFTPKEWYK 198
L+ P + VD +G YV D +++ K+ + +++ L P
Sbjct: 105 DGLNYPEG-------LAVDTQGAVYVADRGNNRVVKLAAGSKTQTVLPFTGLNDP----- 152
Query: 199 NLVGLNGIVYHPDGFLIVIHTFSGNLFKIDIVDGVGEGEEIKLIRVAGGPLSFGDGLELL 258
+G+ G + V T + + K++ + + + ++ G+ +
Sbjct: 153 -----DGVAVDNSGNVYVTDTDNNRVVKLE-AESNN------QVVLPFTDITAPWGIAVD 200
Query: 259 SPTKLVVA--GNPSARLVESSDGWETAAVVAKFSGPVHRLATAATVKDGRVY 308
+ V + + T + P +A D VY
Sbjct: 201 EAGTVYVTEHNTNQVVKLLAGSTTSTVLPFTGLNTP-LAVAVD---SDRTVY 248
|
| >2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A* Length = 322 | Back alignment and structure |
|---|
Score = 39.7 bits (92), Expect = 8e-04
Identities = 39/287 (13%), Positives = 77/287 (26%), Gaps = 35/287 (12%)
Query: 48 ECAKWDDSGRRFIVSFLDGGIGQVAVPDD---------YPPGTVLEEVTLVKDLELTGNG 98
+D + + F S DG + + P+ E + +
Sbjct: 22 NSFTFDSTNKGFYTSVQDGRVIKYEGPNSGFVDFAYASPYWNKAFCENSTDAEKRPLCGR 81
Query: 99 SLGLVLDHPRNRLLVVAADVFGNKYSAVAAYDLSTWNRLFLTQLSGPSDGKSCADDVTVD 158
+ + + N+L +V + Y ++ + L K
Sbjct: 82 TYDISYNLQNNQLYIV------DCYYHLSVVGSEGGHATQLATSVDGVPFKWLYAVTVDQ 135
Query: 159 AEGNAYVTDVTGSKIWKVGVKGEFLSIISSP-LF-------TPKEWYKNLVGLNGIVYHP 210
G Y TD + GV+ + + L K L G
Sbjct: 136 RTGIVYFTD-VSTLYDDRGVQQIMDTSDKTGRLIKYDPSTKETTLLLKELHVPGGAEVSA 194
Query: 211 DG-FLIVIHTFSGNLFKIDIVDGVGEGEEIKLIRVAGGPLSF---GDG---LELLSPTKL 263
D F++V S + K + E+ L+++ P + DG +
Sbjct: 195 DSSFVLVAEFLSHQIVKYWLEGPKKGTAEV-LVKI-PNPGNIKRNADGHFWVSSSEELDG 252
Query: 264 VVAGNPSARLVE-SSDGWETAAVVAKFSGPVHRLATAATVKDGRVYL 309
+ G + ++ G V+ DG +Y+
Sbjct: 253 NMHGRVDPKGIKFDEFG-NILEVIPLPPPFAGEHFEQIQEHDGLLYI 298
|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 332 | |||
| 2p9w_A | 334 | MAL S 1 allergenic protein; beta propeller; 1.35A | 99.96 | |
| 3g4e_A | 297 | Regucalcin; six bladed beta-propeller, gluconolcat | 99.94 | |
| 2p4o_A | 306 | Hypothetical protein; putative lactonase, structur | 99.93 | |
| 2fp8_A | 322 | Strictosidine synthase; six bladed beta propeller | 99.93 | |
| 3e5z_A | 296 | Putative gluconolactonase; X-RAY NESG Q9RXN3 gluco | 99.9 | |
| 1q7f_A | 286 | NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL | 99.89 | |
| 3dr2_A | 305 | Exported gluconolactonase; gluconolactonase SMP-30 | 99.89 | |
| 2qe8_A | 343 | Uncharacterized protein; structural genomics, join | 99.88 | |
| 3fvz_A | 329 | Peptidyl-glycine alpha-amidating monooxygenase; be | 99.88 | |
| 1rwi_B | 270 | Serine/threonine-protein kinase PKND; beta propell | 99.88 | |
| 1npe_A | 267 | Nidogen, entactin; glycoprotein, basement membrane | 99.88 | |
| 2qc5_A | 300 | Streptogramin B lactonase; beta propeller, lyase; | 99.87 | |
| 3sre_A | 355 | PON1, serum paraoxonase; directed evolution, 6-bla | 99.87 | |
| 3v64_C | 349 | Agrin; beta propeller, laminin-G, signaling, prote | 99.86 | |
| 2qc5_A | 300 | Streptogramin B lactonase; beta propeller, lyase; | 99.86 | |
| 2z2n_A | 299 | Virginiamycin B lyase; seven-bladed beta-propeller | 99.86 | |
| 2ghs_A | 326 | AGR_C_1268P; regucalcin, structural genomics, join | 99.86 | |
| 3v65_B | 386 | Low-density lipoprotein receptor-related protein; | 99.86 | |
| 4hw6_A | 433 | Hypothetical protein, IPT/TIG domain protein; puta | 99.85 | |
| 3hrp_A | 409 | Uncharacterized protein; NP_812590.1, structural g | 99.85 | |
| 2z2n_A | 299 | Virginiamycin B lyase; seven-bladed beta-propeller | 99.85 | |
| 1ijq_A | 316 | LDL receptor, low-density lipoprotein receptor; be | 99.85 | |
| 2dg1_A | 333 | DRP35, lactonase; beta propeller, hydrolase; 1.72A | 99.84 | |
| 1pjx_A | 314 | Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotries | 99.84 | |
| 3tc9_A | 430 | Hypothetical hydrolase; 6-bladed beta-propeller, i | 99.83 | |
| 3sov_A | 318 | LRP-6, low-density lipoprotein receptor-related pr | 99.82 | |
| 3p5b_L | 400 | Low density lipoprotein receptor variant; B-propel | 99.82 | |
| 3hrp_A | 409 | Uncharacterized protein; NP_812590.1, structural g | 99.82 | |
| 1rwi_B | 270 | Serine/threonine-protein kinase PKND; beta propell | 99.82 | |
| 3v64_C | 349 | Agrin; beta propeller, laminin-G, signaling, prote | 99.81 | |
| 3v65_B | 386 | Low-density lipoprotein receptor-related protein; | 99.81 | |
| 1npe_A | 267 | Nidogen, entactin; glycoprotein, basement membrane | 99.8 | |
| 3fvz_A | 329 | Peptidyl-glycine alpha-amidating monooxygenase; be | 99.79 | |
| 3dsm_A | 328 | Uncharacterized protein bacuni_02894; seven_blated | 99.79 | |
| 1q7f_A | 286 | NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL | 99.79 | |
| 3dsm_A | 328 | Uncharacterized protein bacuni_02894; seven_blated | 99.78 | |
| 1ijq_A | 316 | LDL receptor, low-density lipoprotein receptor; be | 99.78 | |
| 3m0c_C | 791 | LDL receptor, low-density lipoprotein receptor; pr | 99.78 | |
| 2ism_A | 352 | Putative oxidoreductase; BL41XU spring-8, bladed b | 99.78 | |
| 3kya_A | 496 | Putative phosphatase; structural genomics, joint c | 99.78 | |
| 4a0p_A | 628 | LRP6, LRP-6, low-density lipoprotein receptor-rela | 99.77 | |
| 3a9g_A | 354 | Putative uncharacterized protein; PQQ dependent de | 99.77 | |
| 4hw6_A | 433 | Hypothetical protein, IPT/TIG domain protein; puta | 99.77 | |
| 3p5b_L | 400 | Low density lipoprotein receptor variant; B-propel | 99.76 | |
| 3s94_A | 619 | LRP-6, low-density lipoprotein receptor-related pr | 99.75 | |
| 1n7d_A | 699 | LDL receptor, low-density lipoprotein receptor; fa | 99.75 | |
| 3tc9_A | 430 | Hypothetical hydrolase; 6-bladed beta-propeller, i | 99.75 | |
| 3s94_A | 619 | LRP-6, low-density lipoprotein receptor-related pr | 99.75 | |
| 3sov_A | 318 | LRP-6, low-density lipoprotein receptor-related pr | 99.75 | |
| 2qe8_A | 343 | Uncharacterized protein; structural genomics, join | 99.74 | |
| 3vgz_A | 353 | Uncharacterized protein YNCE; beta-propeller, prot | 99.74 | |
| 3vgz_A | 353 | Uncharacterized protein YNCE; beta-propeller, prot | 99.74 | |
| 3kya_A | 496 | Putative phosphatase; structural genomics, joint c | 99.72 | |
| 3das_A | 347 | Putative oxidoreductase; aldose sugar dehydrogenas | 99.72 | |
| 4a0p_A | 628 | LRP6, LRP-6, low-density lipoprotein receptor-rela | 99.71 | |
| 3m0c_C | 791 | LDL receptor, low-density lipoprotein receptor; pr | 99.71 | |
| 2fp8_A | 322 | Strictosidine synthase; six bladed beta propeller | 99.7 | |
| 2iwa_A | 266 | Glutamine cyclotransferase; pyroglutamate, acyltra | 99.69 | |
| 3g4e_A | 297 | Regucalcin; six bladed beta-propeller, gluconolcat | 99.69 | |
| 3hfq_A | 347 | Uncharacterized protein LP_2219; Q88V64_lacpl, NES | 99.68 | |
| 3e5z_A | 296 | Putative gluconolactonase; X-RAY NESG Q9RXN3 gluco | 99.68 | |
| 3q6k_A | 381 | 43.2 kDa salivary protein; beta propeller, binding | 99.65 | |
| 2p4o_A | 306 | Hypothetical protein; putative lactonase, structur | 99.65 | |
| 3u4y_A | 331 | Uncharacterized protein; structural genomics, PSI- | 99.65 | |
| 2g8s_A | 353 | Glucose/sorbosone dehydrogenases; bladed beta-prop | 99.64 | |
| 3dr2_A | 305 | Exported gluconolactonase; gluconolactonase SMP-30 | 99.63 | |
| 1n7d_A | 699 | LDL receptor, low-density lipoprotein receptor; fa | 99.63 | |
| 2iwa_A | 266 | Glutamine cyclotransferase; pyroglutamate, acyltra | 99.62 | |
| 2dg1_A | 333 | DRP35, lactonase; beta propeller, hydrolase; 1.72A | 99.61 | |
| 3nol_A | 262 | Glutamine cyclotransferase; beta-propeller, glutam | 99.61 | |
| 3mbr_X | 243 | Glutamine cyclotransferase; beta-propeller; 1.44A | 99.6 | |
| 1pjx_A | 314 | Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotries | 99.6 | |
| 3hfq_A | 347 | Uncharacterized protein LP_2219; Q88V64_lacpl, NES | 99.59 | |
| 3nok_A | 268 | Glutaminyl cyclase; beta-propeller, cyclotransfera | 99.57 | |
| 3no2_A | 276 | Uncharacterized protein; six-bladed beta-propeller | 99.55 | |
| 3scy_A | 361 | Hypothetical bacterial 6-phosphogluconolactonase; | 99.52 | |
| 2ism_A | 352 | Putative oxidoreductase; BL41XU spring-8, bladed b | 99.52 | |
| 1l0q_A | 391 | Surface layer protein; SLP, S-layer, 7-bladed beta | 99.51 | |
| 3c75_H | 426 | MADH, methylamine dehydrogenase heavy chain; coppe | 99.51 | |
| 3nol_A | 262 | Glutamine cyclotransferase; beta-propeller, glutam | 99.5 | |
| 3u4y_A | 331 | Uncharacterized protein; structural genomics, PSI- | 99.49 | |
| 3mbr_X | 243 | Glutamine cyclotransferase; beta-propeller; 1.44A | 99.49 | |
| 2ghs_A | 326 | AGR_C_1268P; regucalcin, structural genomics, join | 99.49 | |
| 3no2_A | 276 | Uncharacterized protein; six-bladed beta-propeller | 99.48 | |
| 2ece_A | 462 | 462AA long hypothetical selenium-binding protein; | 99.48 | |
| 2oiz_A | 361 | Aromatic amine dehydrogenase, large subunit; oxido | 99.47 | |
| 3qqz_A | 255 | Putative uncharacterized protein YJIK; MCSG, PSI-2 | 99.47 | |
| 3qqz_A | 255 | Putative uncharacterized protein YJIK; MCSG, PSI-2 | 99.47 | |
| 1ri6_A | 343 | Putative isomerase YBHE; 7-bladed propeller, enzym | 99.46 | |
| 1ri6_A | 343 | Putative isomerase YBHE; 7-bladed propeller, enzym | 99.45 | |
| 3nok_A | 268 | Glutaminyl cyclase; beta-propeller, cyclotransfera | 99.45 | |
| 1nir_A | 543 | Nitrite reductase; hemoprotein, denitrification, d | 99.44 | |
| 3bws_A | 433 | Protein LP49; two-domain, immunoglobulin-like, 7-b | 99.42 | |
| 3c75_H | 426 | MADH, methylamine dehydrogenase heavy chain; coppe | 99.41 | |
| 3scy_A | 361 | Hypothetical bacterial 6-phosphogluconolactonase; | 99.41 | |
| 1pby_B | 337 | Quinohemoprotein amine dehydrogenase 40 kDa subuni | 99.41 | |
| 1nir_A | 543 | Nitrite reductase; hemoprotein, denitrification, d | 99.41 | |
| 2mad_H | 373 | Methylamine dehydrogenase (heavy subunit); oxidore | 99.4 | |
| 1l0q_A | 391 | Surface layer protein; SLP, S-layer, 7-bladed beta | 99.38 | |
| 3a9g_A | 354 | Putative uncharacterized protein; PQQ dependent de | 99.38 | |
| 2mad_H | 373 | Methylamine dehydrogenase (heavy subunit); oxidore | 99.38 | |
| 1mda_H | 368 | Methylamine dehydrogenase (heavy subunit); electro | 99.38 | |
| 3bws_A | 433 | Protein LP49; two-domain, immunoglobulin-like, 7-b | 99.37 | |
| 3sjl_D | 386 | Methylamine dehydrogenase heavy chain; MAUG, C-hem | 99.37 | |
| 1jmx_B | 349 | Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; | 99.36 | |
| 1cru_A | 454 | Protein (soluble quinoprotein glucose dehydrogena; | 99.36 | |
| 1qks_A | 567 | Cytochrome CD1 nitrite reductase; enzyme, oxidored | 99.35 | |
| 1jof_A | 365 | Carboxy-CIS,CIS-muconate cyclase; beta-propeller, | 99.32 | |
| 1fwx_A | 595 | Nitrous oxide reductase; beta-propeller domain, cu | 99.3 | |
| 2p9w_A | 334 | MAL S 1 allergenic protein; beta propeller; 1.35A | 99.3 | |
| 3sre_A | 355 | PON1, serum paraoxonase; directed evolution, 6-bla | 99.29 | |
| 1jmx_B | 349 | Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; | 99.29 | |
| 2ece_A | 462 | 462AA long hypothetical selenium-binding protein; | 99.28 | |
| 3sjl_D | 386 | Methylamine dehydrogenase heavy chain; MAUG, C-hem | 99.27 | |
| 2g8s_A | 353 | Glucose/sorbosone dehydrogenases; bladed beta-prop | 99.26 | |
| 1qks_A | 567 | Cytochrome CD1 nitrite reductase; enzyme, oxidored | 99.24 | |
| 3hxj_A | 330 | Pyrrolo-quinoline quinone; all beta protein. incom | 99.24 | |
| 1mda_H | 368 | Methylamine dehydrogenase (heavy subunit); electro | 99.24 | |
| 2oiz_A | 361 | Aromatic amine dehydrogenase, large subunit; oxido | 99.23 | |
| 1pby_B | 337 | Quinohemoprotein amine dehydrogenase 40 kDa subuni | 99.23 | |
| 1jof_A | 365 | Carboxy-CIS,CIS-muconate cyclase; beta-propeller, | 99.23 | |
| 3v9f_A | 781 | Two-component system sensor histidine kinase/RESP | 99.19 | |
| 3das_A | 347 | Putative oxidoreductase; aldose sugar dehydrogenas | 99.18 | |
| 1cru_A | 454 | Protein (soluble quinoprotein glucose dehydrogena; | 99.17 | |
| 1gxr_A | 337 | ESG1, transducin-like enhancer protein 1; transcri | 99.05 | |
| 4a2l_A | 795 | BT_4663, two-component system sensor histidine kin | 99.05 | |
| 4a2l_A | 795 | BT_4663, two-component system sensor histidine kin | 99.03 | |
| 3hxj_A | 330 | Pyrrolo-quinoline quinone; all beta protein. incom | 99.02 | |
| 2wg3_C | 463 | Hedgehog-interacting protein; lipoprotein, develop | 99.02 | |
| 3v9f_A | 781 | Two-component system sensor histidine kinase/RESP | 99.01 | |
| 3ow8_A | 321 | WD repeat-containing protein 61; structural genomi | 99.0 | |
| 1gxr_A | 337 | ESG1, transducin-like enhancer protein 1; transcri | 98.97 | |
| 1fwx_A | 595 | Nitrous oxide reductase; beta-propeller domain, cu | 98.97 | |
| 3q6k_A | 381 | 43.2 kDa salivary protein; beta propeller, binding | 98.97 | |
| 3zwl_B | 369 | Eukaryotic translation initiation factor 3 subuni; | 98.95 | |
| 1got_B | 340 | GT-beta; complex (GTP-binding/transducer), G prote | 98.9 | |
| 4ery_A | 312 | WD repeat-containing protein 5; WD40, WIN motif, b | 98.88 | |
| 3ow8_A | 321 | WD repeat-containing protein 61; structural genomi | 98.84 | |
| 4ery_A | 312 | WD repeat-containing protein 5; WD40, WIN motif, b | 98.82 | |
| 2ymu_A | 577 | WD-40 repeat protein; unknown function, two domain | 98.8 | |
| 1k8k_C | 372 | P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta- | 98.79 | |
| 2hqs_A | 415 | Protein TOLB; TOLB, PAL, TOL, transport protein-li | 98.77 | |
| 2ojh_A | 297 | Uncharacterized protein ATU1656/AGR_C_3050; TOLB, | 98.76 | |
| 4h5i_A | 365 | Guanine nucleotide-exchange factor SEC12; copii ve | 98.75 | |
| 3ott_A | 758 | Two-component system sensor histidine kinase; beta | 98.75 | |
| 2ymu_A | 577 | WD-40 repeat protein; unknown function, two domain | 98.74 | |
| 2aq5_A | 402 | Coronin-1A; WD40 repeat, 7-bladed beta-propeller, | 98.73 | |
| 3ott_A | 758 | Two-component system sensor histidine kinase; beta | 98.71 | |
| 4gqb_B | 344 | Methylosome protein 50; TIM barrel, beta-propeller | 98.7 | |
| 3zwl_B | 369 | Eukaryotic translation initiation factor 3 subuni; | 98.7 | |
| 1r5m_A | 425 | SIR4-interacting protein SIF2; transcription corep | 98.68 | |
| 4g56_B | 357 | MGC81050 protein; protein arginine methyltransfera | 98.68 | |
| 3frx_A | 319 | Guanine nucleotide-binding protein subunit beta- l | 98.66 | |
| 3pe7_A | 388 | Oligogalacturonate lyase; seven-bladed beta-propel | 98.66 | |
| 2pbi_B | 354 | Guanine nucleotide-binding protein subunit beta 5; | 98.66 | |
| 1vyh_C | 410 | Platelet-activating factor acetylhydrolase IB alph | 98.66 | |
| 3ei3_B | 383 | DNA damage-binding protein 2; UV-damage, DDB, nucl | 98.65 | |
| 2aq5_A | 402 | Coronin-1A; WD40 repeat, 7-bladed beta-propeller, | 98.65 | |
| 2pbi_B | 354 | Guanine nucleotide-binding protein subunit beta 5; | 98.64 | |
| 4gqb_B | 344 | Methylosome protein 50; TIM barrel, beta-propeller | 98.64 | |
| 3mkq_A | 814 | Coatomer beta'-subunit; beta-propeller, alpha-sole | 98.64 | |
| 1got_B | 340 | GT-beta; complex (GTP-binding/transducer), G prote | 98.64 | |
| 2ynn_A | 304 | Coatomer subunit beta'; protein transport, peptide | 98.64 | |
| 2ojh_A | 297 | Uncharacterized protein ATU1656/AGR_C_3050; TOLB, | 98.63 | |
| 4aez_A | 401 | CDC20, WD repeat-containing protein SLP1; cell cyc | 98.62 | |
| 2hqs_A | 415 | Protein TOLB; TOLB, PAL, TOL, transport protein-li | 98.61 | |
| 2z3z_A | 706 | Dipeptidyl aminopeptidase IV; peptidase family S9, | 98.6 | |
| 3iz6_a | 380 | 40S ribosomal protein RACK1 (RACK1); eukaryotic ri | 98.59 | |
| 2ecf_A | 741 | Dipeptidyl peptidase IV; prolyl oligopeptidase fam | 98.59 | |
| 1erj_A | 393 | Transcriptional repressor TUP1; beta-propeller, tr | 98.59 | |
| 3amr_A | 355 | 3-phytase; beta-propeller, phytate, MYO-inositol h | 98.58 | |
| 1vyh_C | 410 | Platelet-activating factor acetylhydrolase IB alph | 98.57 | |
| 2ynn_A | 304 | Coatomer subunit beta'; protein transport, peptide | 98.55 | |
| 4g56_B | 357 | MGC81050 protein; protein arginine methyltransfera | 98.55 | |
| 1nr0_A | 611 | Actin interacting protein 1; beta propeller, WD40 | 98.54 | |
| 4h5i_A | 365 | Guanine nucleotide-exchange factor SEC12; copii ve | 98.54 | |
| 1r5m_A | 425 | SIR4-interacting protein SIF2; transcription corep | 98.53 | |
| 1k8k_C | 372 | P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta- | 98.53 | |
| 3fm0_A | 345 | Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD r | 98.52 | |
| 3amr_A | 355 | 3-phytase; beta-propeller, phytate, MYO-inositol h | 98.52 | |
| 3jrp_A | 379 | Fusion protein of protein transport protein SEC13 | 98.51 | |
| 4e54_B | 435 | DNA damage-binding protein 2; beta barrel, double | 98.5 | |
| 2vdu_B | 450 | TRNA (guanine-N(7)-)-methyltransferase- associated | 98.49 | |
| 3vl1_A | 420 | 26S proteasome regulatory subunit RPN14; beta-prop | 98.48 | |
| 3mkq_A | 814 | Coatomer beta'-subunit; beta-propeller, alpha-sole | 98.47 | |
| 1pgu_A | 615 | Actin interacting protein 1; WD repeat, seven-blad | 98.47 | |
| 3sfz_A | 1249 | APAF-1, apoptotic peptidase activating factor 1; a | 98.47 | |
| 4a9v_A | 592 | PHOX; hydrolase, beta-propeller; 1.10A {Pseudomona | 98.46 | |
| 2z3z_A | 706 | Dipeptidyl aminopeptidase IV; peptidase family S9, | 98.46 | |
| 3frx_A | 319 | Guanine nucleotide-binding protein subunit beta- l | 98.46 | |
| 2xzm_R | 343 | RACK1; ribosome, translation; 3.93A {Tetrahymena t | 98.45 | |
| 3q7m_A | 376 | Lipoprotein YFGL, BAMB; beta-propeller, BAM comple | 98.45 | |
| 3sfz_A | 1249 | APAF-1, apoptotic peptidase activating factor 1; a | 98.44 | |
| 3dwl_C | 377 | Actin-related protein 2/3 complex subunit 1; prope | 98.44 | |
| 3dm0_A | 694 | Maltose-binding periplasmic protein fused with RAC | 98.42 | |
| 3vl1_A | 420 | 26S proteasome regulatory subunit RPN14; beta-prop | 98.42 | |
| 3dm0_A | 694 | Maltose-binding periplasmic protein fused with RAC | 98.4 | |
| 1sq9_A | 397 | Antiviral protein SKI8; WD repeat, beta-transducin | 98.39 | |
| 2pm9_A | 416 | Protein WEB1, protein transport protein SEC31; bet | 98.39 | |
| 4aez_A | 401 | CDC20, WD repeat-containing protein SLP1; cell cyc | 98.39 | |
| 3o4h_A | 582 | Acylamino-acid-releasing enzyme; alpha/beta hydrol | 98.39 | |
| 3odt_A | 313 | Protein DOA1; ubiquitin, nuclear protein; HET: MSE | 98.38 | |
| 3pe7_A | 388 | Oligogalacturonate lyase; seven-bladed beta-propel | 98.36 | |
| 2vdu_B | 450 | TRNA (guanine-N(7)-)-methyltransferase- associated | 98.36 | |
| 3s25_A | 302 | Hypothetical 7-bladed beta-propeller-like protein; | 98.36 | |
| 2pm9_A | 416 | Protein WEB1, protein transport protein SEC31; bet | 98.35 | |
| 2ecf_A | 741 | Dipeptidyl peptidase IV; prolyl oligopeptidase fam | 98.34 | |
| 3ei3_B | 383 | DNA damage-binding protein 2; UV-damage, DDB, nucl | 98.34 | |
| 2xyi_A | 430 | Probable histone-binding protein CAF1; transcripti | 98.31 | |
| 1xfd_A | 723 | DIP, dipeptidyl aminopeptidase-like protein 6, dip | 98.31 | |
| 4a11_B | 408 | DNA excision repair protein ERCC-8; DNA binding pr | 98.31 | |
| 3iz6_a | 380 | 40S ribosomal protein RACK1 (RACK1); eukaryotic ri | 98.3 | |
| 1sq9_A | 397 | Antiviral protein SKI8; WD repeat, beta-transducin | 98.28 | |
| 3q7m_A | 376 | Lipoprotein YFGL, BAMB; beta-propeller, BAM comple | 98.27 | |
| 2ad6_A | 571 | Methanol dehydrogenase subunit 1; PQQ configuratio | 98.25 | |
| 1erj_A | 393 | Transcriptional repressor TUP1; beta-propeller, tr | 98.25 | |
| 3dwl_C | 377 | Actin-related protein 2/3 complex subunit 1; prope | 98.24 | |
| 3k26_A | 366 | Polycomb protein EED; WD40, structural genomics, N | 98.23 | |
| 3azo_A | 662 | Aminopeptidase; POP family, hydrolase; 2.00A {Stre | 98.22 | |
| 1nr0_A | 611 | Actin interacting protein 1; beta propeller, WD40 | 98.21 | |
| 2xzm_R | 343 | RACK1; ribosome, translation; 3.93A {Tetrahymena t | 98.2 | |
| 1pgu_A | 615 | Actin interacting protein 1; WD repeat, seven-blad | 98.2 | |
| 3s25_A | 302 | Hypothetical 7-bladed beta-propeller-like protein; | 98.19 | |
| 2wg3_C | 463 | Hedgehog-interacting protein; lipoprotein, develop | 98.18 | |
| 1yfq_A | 342 | Cell cycle arrest protein BUB3; WD repeat WD40 rep | 98.16 | |
| 3azo_A | 662 | Aminopeptidase; POP family, hydrolase; 2.00A {Stre | 98.15 | |
| 4aow_A | 340 | Guanine nucleotide-binding protein subunit beta-2; | 98.14 | |
| 2xyi_A | 430 | Probable histone-binding protein CAF1; transcripti | 98.13 | |
| 3mmy_A | 368 | MRNA export factor; mRNA export, nuclear protein; | 98.13 | |
| 2pm7_B | 297 | Protein transport protein SEC13, protein transport | 98.12 | |
| 2oaj_A | 902 | Protein SNI1; WD40 repeat, beta propeller, endocyt | 98.11 | |
| 3i2n_A | 357 | WD repeat-containing protein 92; WD40 repeats, str | 98.11 | |
| 3dw8_B | 447 | Serine/threonine-protein phosphatase 2A 55 kDa RE | 98.1 | |
| 1xfd_A | 723 | DIP, dipeptidyl aminopeptidase-like protein 6, dip | 98.1 | |
| 3jro_A | 753 | Fusion protein of protein transport protein SEC13 | 98.09 | |
| 3i2n_A | 357 | WD repeat-containing protein 92; WD40 repeats, str | 98.09 | |
| 3jrp_A | 379 | Fusion protein of protein transport protein SEC13 | 98.08 | |
| 4a9v_A | 592 | PHOX; hydrolase, beta-propeller; 1.10A {Pseudomona | 98.07 | |
| 3lrv_A | 343 | PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiqu | 98.05 | |
| 1kb0_A | 677 | Quinohemoprotein alcohol dehydrogenase; beta-prope | 98.05 | |
| 1w6s_A | 599 | Methanol dehydrogenase subunit 1; anisotropic, ele | 98.03 | |
| 4aow_A | 340 | Guanine nucleotide-binding protein subunit beta-2; | 98.03 | |
| 1k32_A | 1045 | Tricorn protease; protein degradation, substrate g | 98.02 | |
| 3dw8_B | 447 | Serine/threonine-protein phosphatase 2A 55 kDa RE | 98.02 | |
| 3odt_A | 313 | Protein DOA1; ubiquitin, nuclear protein; HET: MSE | 97.98 | |
| 3f3f_A | 351 | Nucleoporin SEH1; structural protein, protein comp | 97.96 | |
| 3k26_A | 366 | Polycomb protein EED; WD40, structural genomics, N | 97.96 | |
| 3gre_A | 437 | Serine/threonine-protein kinase VPS15; seven-blade | 97.95 | |
| 3fm0_A | 345 | Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD r | 97.94 | |
| 1yiq_A | 689 | Quinohemoprotein alcohol dehydrogenase; electron t | 97.94 | |
| 3c5m_A | 396 | Oligogalacturonate lyase; blade-shaped beta-propel | 97.92 | |
| 3v7d_B | 464 | Cell division control protein 4; WD 40 domain, pho | 97.92 | |
| 1yfq_A | 342 | Cell cycle arrest protein BUB3; WD repeat WD40 rep | 97.91 | |
| 3lrv_A | 343 | PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiqu | 97.91 | |
| 3c5m_A | 396 | Oligogalacturonate lyase; blade-shaped beta-propel | 97.9 | |
| 2ad6_A | 571 | Methanol dehydrogenase subunit 1; PQQ configuratio | 97.87 | |
| 4a11_B | 408 | DNA excision repair protein ERCC-8; DNA binding pr | 97.86 | |
| 1tl2_A | 236 | L10, protein (tachylectin-2); animal lectin, horse | 97.85 | |
| 1kb0_A | 677 | Quinohemoprotein alcohol dehydrogenase; beta-prope | 97.85 | |
| 1flg_A | 582 | Protein (quinoprotein ethanol dehydrogenase); supe | 97.84 | |
| 1kv9_A | 668 | Type II quinohemoprotein alcohol dehydrogenase; el | 97.81 | |
| 2xdw_A | 710 | Prolyl endopeptidase; alpha/beta-hydrolase, amnesi | 97.78 | |
| 3o4h_A | 582 | Acylamino-acid-releasing enzyme; alpha/beta hydrol | 97.72 | |
| 4gga_A | 420 | P55CDC, cell division cycle protein 20 homolog; ce | 97.71 | |
| 3v7d_B | 464 | Cell division control protein 4; WD 40 domain, pho | 97.71 | |
| 4e54_B | 435 | DNA damage-binding protein 2; beta barrel, double | 97.69 | |
| 2hes_X | 330 | YDR267CP; beta-propeller, WD40 repeat, biosyntheti | 97.68 | |
| 3jro_A | 753 | Fusion protein of protein transport protein SEC13 | 97.67 | |
| 2j04_A | 588 | TAU60, YPL007P, hypothetical protein YPL007C; beta | 97.67 | |
| 1k32_A | 1045 | Tricorn protease; protein degradation, substrate g | 97.67 | |
| 3gre_A | 437 | Serine/threonine-protein kinase VPS15; seven-blade | 97.63 | |
| 4a5s_A | 740 | Dipeptidyl peptidase 4 soluble form; hydrolase, ty | 97.61 | |
| 1tl2_A | 236 | L10, protein (tachylectin-2); animal lectin, horse | 97.6 | |
| 3vu4_A | 355 | KMHSV2; beta-propeller fold, protein transport; 2. | 97.59 | |
| 1kv9_A | 668 | Type II quinohemoprotein alcohol dehydrogenase; el | 97.59 | |
| 1z68_A | 719 | Fibroblast activation protein, alpha subunit; sepr | 97.57 | |
| 3bg1_A | 316 | Protein SEC13 homolog; NPC, transport, WD repeat, | 97.57 | |
| 1yiq_A | 689 | Quinohemoprotein alcohol dehydrogenase; electron t | 97.54 | |
| 2gop_A | 347 | Trilobed protease; beta propeller, open velcro, hy | 97.51 | |
| 2bkl_A | 695 | Prolyl endopeptidase; mechanistic study, celiac sp | 97.5 | |
| 3f3f_A | 351 | Nucleoporin SEH1; structural protein, protein comp | 97.49 | |
| 1flg_A | 582 | Protein (quinoprotein ethanol dehydrogenase); supe | 97.48 | |
| 4gga_A | 420 | P55CDC, cell division cycle protein 20 homolog; ce | 97.43 | |
| 2j04_A | 588 | TAU60, YPL007P, hypothetical protein YPL007C; beta | 97.43 | |
| 2pm7_B | 297 | Protein transport protein SEC13, protein transport | 97.41 | |
| 3zwu_A | 592 | Alkaline phosphatase PHOX; hydrolase, beta-propell | 97.37 | |
| 2xdw_A | 710 | Prolyl endopeptidase; alpha/beta-hydrolase, amnesi | 97.37 | |
| 1w6s_A | 599 | Methanol dehydrogenase subunit 1; anisotropic, ele | 97.34 | |
| 3zwu_A | 592 | Alkaline phosphatase PHOX; hydrolase, beta-propell | 97.3 | |
| 2bkl_A | 695 | Prolyl endopeptidase; mechanistic study, celiac sp | 97.25 | |
| 2ovr_B | 445 | FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 | 97.16 | |
| 4gq1_A | 393 | NUP37; propeller, transport protein; 2.40A {Schizo | 97.15 | |
| 3bg1_A | 316 | Protein SEC13 homolog; NPC, transport, WD repeat, | 97.04 | |
| 2hes_X | 330 | YDR267CP; beta-propeller, WD40 repeat, biosyntheti | 97.04 | |
| 2oit_A | 434 | Nucleoporin 214KDA; NH2 terminal domain of NUP214/ | 97.0 | |
| 3mmy_A | 368 | MRNA export factor; mRNA export, nuclear protein; | 97.0 | |
| 2w18_A | 356 | PALB2, fancn, partner and localizer of BRCA2; fanc | 97.0 | |
| 1yr2_A | 741 | Prolyl oligopeptidase; prolyl endopeptidase, mecha | 96.98 | |
| 3vu4_A | 355 | KMHSV2; beta-propeller fold, protein transport; 2. | 96.98 | |
| 2oaj_A | 902 | Protein SNI1; WD40 repeat, beta propeller, endocyt | 96.96 | |
| 2j04_B | 524 | YDR362CP, TAU91; beta propeller, type 2 promoters, | 96.96 | |
| 2ovr_B | 445 | FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 | 96.83 | |
| 4ggc_A | 318 | P55CDC, cell division cycle protein 20 homolog; ce | 96.79 | |
| 4ggc_A | 318 | P55CDC, cell division cycle protein 20 homolog; ce | 96.7 | |
| 1yr2_A | 741 | Prolyl oligopeptidase; prolyl endopeptidase, mecha | 96.66 | |
| 2oit_A | 434 | Nucleoporin 214KDA; NH2 terminal domain of NUP214/ | 96.62 | |
| 1p22_A | 435 | F-BOX/WD-repeat protein 1A; ubiquitination, degrad | 96.62 | |
| 1p22_A | 435 | F-BOX/WD-repeat protein 1A; ubiquitination, degrad | 96.51 | |
| 1z68_A | 719 | Fibroblast activation protein, alpha subunit; sepr | 96.47 | |
| 2gop_A | 347 | Trilobed protease; beta propeller, open velcro, hy | 96.42 | |
| 4a5s_A | 740 | Dipeptidyl peptidase 4 soluble form; hydrolase, ty | 96.41 | |
| 2j04_B | 524 | YDR362CP, TAU91; beta propeller, type 2 promoters, | 96.32 | |
| 2w18_A | 356 | PALB2, fancn, partner and localizer of BRCA2; fanc | 95.8 | |
| 1k3i_A | 656 | Galactose oxidase precursor; blade beta propeller, | 95.74 | |
| 2xbg_A | 327 | YCF48-like protein; photosynthesis, photosystem II | 95.65 | |
| 3sbq_A | 638 | Nitrous-oxide reductase; beta-propeller, cupredoxi | 95.58 | |
| 3iuj_A | 693 | Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas | 95.47 | |
| 1k3i_A | 656 | Galactose oxidase precursor; blade beta propeller, | 95.36 | |
| 2xbg_A | 327 | YCF48-like protein; photosynthesis, photosystem II | 95.28 | |
| 3iuj_A | 693 | Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas | 95.13 | |
| 2hz6_A | 369 | Endoplasmic reticulum to nucleus signalling 1 isof | 95.09 | |
| 2hz6_A | 369 | Endoplasmic reticulum to nucleus signalling 1 isof | 94.62 | |
| 4gq1_A | 393 | NUP37; propeller, transport protein; 2.40A {Schizo | 94.22 | |
| 3sbq_A | 638 | Nitrous-oxide reductase; beta-propeller, cupredoxi | 93.34 | |
| 3ii7_A | 306 | Kelch-like protein 7; protein-binding, kelch-repea | 93.16 | |
| 3b7f_A | 394 | Glycosyl hydrolase, BNR repeat; 7-bladed beta-prop | 92.81 | |
| 1zgk_A | 308 | Kelch-like ECH-associated protein 1; beta-propelle | 92.45 | |
| 2be1_A | 339 | Serine/threonine-protein kinase/endoribonuclease; | 92.39 | |
| 2xe4_A | 751 | Oligopeptidase B; hydrolase-inhibitor complex, hyd | 92.24 | |
| 2vpj_A | 301 | Kelch-like protein 12; adaptor protein, WNT signal | 90.49 | |
| 3b7f_A | 394 | Glycosyl hydrolase, BNR repeat; 7-bladed beta-prop | 89.35 | |
| 4asc_A | 315 | Kelch repeat and BTB domain-containing protein 5; | 88.4 | |
| 2uvk_A | 357 | YJHT; unknown function, hypothetical protein, sial | 87.88 | |
| 2xzh_A | 365 | Clathrin heavy chain 1; endocytosis, endocytosis i | 86.68 | |
| 2xe4_A | 751 | Oligopeptidase B; hydrolase-inhibitor complex, hyd | 85.82 | |
| 2xn4_A | 302 | Kelch-like protein 2; structural protein, cytoskel | 85.4 | |
| 2vpj_A | 301 | Kelch-like protein 12; adaptor protein, WNT signal | 83.75 | |
| 2woz_A | 318 | Kelch repeat and BTB domain-containing protein 10; | 83.63 | |
| 1bpo_A | 494 | Protein (clathrin); clathrin endocytosis beta-prop | 83.14 | |
| 2be1_A | 339 | Serine/threonine-protein kinase/endoribonuclease; | 82.75 | |
| 2zwa_A | 695 | Leucine carboxyl methyltransferase 2; HET: SAH CIT | 81.27 | |
| 3hx6_A | 570 | Type 4 fimbrial biogenesis protein PILY1; beta pro | 81.04 |
| >2p9w_A MAL S 1 allergenic protein; beta propeller; 1.35A {Malassezia sympodialis} | Back alignment and structure |
|---|
Probab=99.96 E-value=3.7e-27 Score=214.74 Aligned_cols=266 Identities=18% Similarity=0.203 Sum_probs=191.0
Q ss_pred CCceeEEEecCCccccceEEcCC-CCEEEEEecCCeEEEEECCCCCCCccceeeeEEecccCcC--C---CccceEEE--
Q 020019 33 PATHVYHYHSSSFFRECAKWDDS-GRRFIVSFLDGGIGQVAVPDDYPPGTVLEEVTLVKDLELT--G---NGSLGLVL-- 104 (332)
Q Consensus 33 ~~~~~i~~~~~~~~pegia~d~~-g~~~~~~~~~g~I~~vd~~~~~~~~~~~~~~~~~~~~~~~--~---~~~~gi~v-- 104 (332)
++++.|.++..+.|||++.||+. |++|++++.+++|+++++.++.. .+ + ..++.. + ..+.||.+
T Consensus 1 ~~~~~i~~~~~~~yPE~~~wd~~~g~~~vs~l~~g~V~~~~~~~~~~----~~---~-~~~~~s~~g~~~~~~sGl~~~~ 72 (334)
T 2p9w_A 1 ALPDQIDVKVKNLTPEDTIYDRTRQVFYQSNLYKGRIEVYNPKTQSH----FN---V-VIDGASSNGDGEQQMSGLSLLT 72 (334)
T ss_dssp CCCSEEEECCTTCCCSCEEEETTTTEEEEEETTTTEEEEECTTTCCE----EE---E-CCTTTCCSSCCSEEEEEEEESS
T ss_pred CCCceEEecCcccCCcCccCcCCCCEEEEEeccCCEEEEEcCCCCeE----EE---E-ecCCccccCCCcceeeEEEEec
Confidence 36789999999999999999884 66666778999999999975541 12 2 223322 2 25789999
Q ss_pred -eCCCCeEEEEEeCcC-----C---CccceEEEEECC---CCcEEEEEecCCCCC--------CCCCccceEECCCCcEE
Q 020019 105 -DHPRNRLLVVAADVF-----G---NKYSAVAAYDLS---TWNRLFLTQLSGPSD--------GKSCADDVTVDAEGNAY 164 (332)
Q Consensus 105 -d~~~g~l~v~~~~~~-----~---~~~~~l~~~d~~---~g~~~~~~~l~~~~~--------~~~~~ndiavd~dG~ly 164 (332)
|++ |+|||+..... . .+...|.+||++ +++..+...|+...+ ....+||+++|++||+|
T Consensus 73 ~D~~-grL~vv~~~~~af~~~g~~~~g~~~v~~~Dl~~~~tg~~~~~~dL~~~~~~~~~~~g~~~~~~nDvavD~~GnaY 151 (334)
T 2p9w_A 73 HDNS-KRLFAVMKNAKSFNFADQSSHGASSFHSFNLPLSENSKPVWSVNFEKVQDEFEKKAGKRPFGVVQSAQDRDGNSY 151 (334)
T ss_dssp SSSC-CEEEEEEEETTTTCTTSCCSSSCCEEEEEESSCCTTCCCSEEEESHHHHHHHHHHHSSCCEEEEEEEECTTSCEE
T ss_pred cCCC-CcEEEEEcccccccccccccCCCCEEEEEcCCcCCCCCEEEEecCccccccccccccccccCCceeEECCCCCEE
Confidence 786 99999643110 0 235679999999 888888888742111 12469999999999999
Q ss_pred EEeCCC-CeEEEEcCCCceEE-EecCCCCCCcccccCccccCeEEEccCc-eEEEEeCCCCeEEEEeCCCCCCccceeEE
Q 020019 165 VTDVTG-SKIWKVGVKGEFLS-IISSPLFTPKEWYKNLVGLNGIVYHPDG-FLIVIHTFSGNLFKIDIVDGVGEGEEIKL 241 (332)
Q Consensus 165 vtd~~~-~~I~~v~~~g~~~~-~~~~~~~~~p~~~~~~~~~nGi~~~~dG-~Lyva~~~~~~i~~id~~~~~~~~~~~~~ 241 (332)
|+++.. +.|+|++++|+... +...... .....++|||+++||| .|++++. .++|++||+... ....
T Consensus 152 Vt~s~~~~~I~rV~pdG~~~~~~~~~~~~-----~~~~~G~nGIv~~pdg~~Liv~~~-~g~L~~fD~~~p-----v~~~ 220 (334)
T 2p9w_A 152 VAFALGMPAIARVSADGKTVSTFAWESGN-----GGQRPGYSGITFDPHSNKLIAFGG-PRALTAFDVSKP-----YAWP 220 (334)
T ss_dssp EEEEESSCEEEEECTTSCCEEEEEECCCC-----SSSCCSCSEEEEETTTTEEEEESS-SSSEEEEECSSS-----SCCC
T ss_pred EeCCCCCCeEEEEeCCCCEEeeeeecCCC-----cccccCcceEEEeCCCCEEEEEcC-CCeEEEEcCCCC-----ccee
Confidence 999999 99999999998443 3322111 1245789999999999 8888888 999999999843 1112
Q ss_pred EEec--C--CCCCCCCeE-EEeCCCeE-EEEeC-CceEEEEcCCCceEEEEEeeecCC-CcccceEEEE----ECCeEEE
Q 020019 242 IRVA--G--GPLSFGDGL-ELLSPTKL-VVAGN-PSARLVESSDGWETAAVVAKFSGP-VHRLATAATV----KDGRVYL 309 (332)
Q Consensus 242 v~~~--g--~~~~~pdGi-~~~~dG~l-~va~~-~~~~~v~~~dg~~~~~~~~~~~~~-~~~~pt~va~----~~g~lyv 309 (332)
+... | ..+..|||| ....+|++ +|+++ ...+++++.|+|+++.+...++.+ ..+.++..+. .++++|+
T Consensus 221 v~~~~~G~~~~~~~~dgilp~~~~G~vllV~~~~~~~~~l~S~DgW~sa~~~g~~~~~~~~~g~tt~t~~~~~~~~~iYv 300 (334)
T 2p9w_A 221 EPVKINGDFGTLSGTEKIVTVPVGNESVLVGARAPYAISFRSWDNWKSANIKKTKRSELQNSGFTAVADYYQGSEQGLYA 300 (334)
T ss_dssp EECEESSCCCCCTTEEEEEEEEETTEEEEEEEETTEEEEEECSSTTSEEEEEEEECGGGGSSCEEEEEEEEETTEEEEEE
T ss_pred ecccccCCcccccCcccccccccCCEEEEEEcCCCCEEEEECCCCcceeEEeeeecCccccCceeEEEEeccccCCeEEE
Confidence 3332 2 245789996 55667887 77764 345678899999999999877643 1345555555 6799997
Q ss_pred -EEecCcccc
Q 020019 310 -NHMLGFGYP 318 (332)
Q Consensus 310 -~~~~g~~~~ 318 (332)
..+++..++
T Consensus 301 v~~~f~~~~~ 310 (334)
T 2p9w_A 301 VSAFFDNGAH 310 (334)
T ss_dssp EECCGGGTTT
T ss_pred EeeecCCccc
Confidence 777776554
|
| >3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B | Back alignment and structure |
|---|
Probab=99.94 E-value=1.4e-24 Score=197.24 Aligned_cols=250 Identities=12% Similarity=0.122 Sum_probs=176.2
Q ss_pred ecCCccccceEEcCC-CCEEEEEecCCeEEEEECCCCCCCccceeeeEEecccCcCCCccceEEEeCCCCeEEEEEeCcC
Q 020019 41 HSSSFFRECAKWDDS-GRRFIVSFLDGGIGQVAVPDDYPPGTVLEEVTLVKDLELTGNGSLGLVLDHPRNRLLVVAADVF 119 (332)
Q Consensus 41 ~~~~~~pegia~d~~-g~~~~~~~~~g~I~~vd~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~vd~~~g~l~v~~~~~~ 119 (332)
.....++||++|+++ +++|+++...++|+++++.+++. .....+ ..+.+++++++ |++|++..
T Consensus 9 ~~~~~~~Egp~w~~~~~~l~~~d~~~~~i~~~d~~~~~~--------~~~~~~----~~~~~i~~~~d-G~l~v~~~--- 72 (297)
T 3g4e_A 9 PENCRCGESPVWEEVSNSLLFVDIPAKKVCRWDSFTKQV--------QRVTMD----APVSSVALRQS-GGYVATIG--- 72 (297)
T ss_dssp CCCCSBEEEEEEETTTTEEEEEETTTTEEEEEETTTCCE--------EEEECS----SCEEEEEEBTT-SSEEEEET---
T ss_pred ccCCccccCCeEECCCCEEEEEECCCCEEEEEECCCCcE--------EEEeCC----CceEEEEECCC-CCEEEEEC---
Confidence 334459999999995 56778888889999999986652 122222 26889999996 88999863
Q ss_pred CCccceEEEEECCCCcEEEEEecCCCCCCCCCccceEECCCCcEEEEeC-----------CCCeEEEEcCCCceEEEecC
Q 020019 120 GNKYSAVAAYDLSTWNRLFLTQLSGPSDGKSCADDVTVDAEGNAYVTDV-----------TGSKIWKVGVKGEFLSIISS 188 (332)
Q Consensus 120 ~~~~~~l~~~d~~~g~~~~~~~l~~~~~~~~~~ndiavd~dG~lyvtd~-----------~~~~I~~v~~~g~~~~~~~~ 188 (332)
..|++||+++++......... ......+|++++|++|++|+++. ..+.||+++++|+...+..
T Consensus 73 ----~~l~~~d~~~g~~~~~~~~~~-~~~~~~~~di~~d~dG~l~~~~~~~~~~~~~~~~~~~~l~~~d~~g~~~~~~~- 146 (297)
T 3g4e_A 73 ----TKFCALNWKEQSAVVLATVDN-DKKNNRFNDGKVDPAGRYFAGTMAEETAPAVLERHQGALYSLFPDHHVKKYFD- 146 (297)
T ss_dssp ----TEEEEEETTTTEEEEEEECCT-TCSSEEEEEEEECTTSCEEEEEEECCSBTTBCCTTCEEEEEECTTSCEEEEEE-
T ss_pred ----CeEEEEECCCCcEEEEEecCC-CCCCCCCCCEEECCCCCEEEecCCcccccccccCCCcEEEEEECCCCEEEEee-
Confidence 368999999888765554421 11235799999999999999874 3468999999987655432
Q ss_pred CCCCCcccccCccccCeEEEccCc-eEEEEeCCCCeEEEEeCC--CCCCccceeEEE-EecCCCCCCCCeEEEeCCCeEE
Q 020019 189 PLFTPKEWYKNLVGLNGIVYHPDG-FLIVIHTFSGNLFKIDIV--DGVGEGEEIKLI-RVAGGPLSFGDGLELLSPTKLV 264 (332)
Q Consensus 189 ~~~~~p~~~~~~~~~nGi~~~~dG-~Lyva~~~~~~i~~id~~--~~~~~~~~~~~v-~~~g~~~~~pdGi~~~~dG~l~ 264 (332)
....||||++++|| .||++++.+++|++++.+ ++... ..+.+ ... .....|+||++|++|+||
T Consensus 147 ----------~~~~pngi~~spdg~~lyv~~~~~~~i~~~~~d~~~G~~~--~~~~~~~~~-~~~~~p~g~~~d~~G~lw 213 (297)
T 3g4e_A 147 ----------QVDISNGLDWSLDHKIFYYIDSLSYSVDAFDYDLQTGQIS--NRRSVYKLE-KEEQIPDGMCIDAEGKLW 213 (297)
T ss_dssp ----------EESBEEEEEECTTSCEEEEEEGGGTEEEEEEECTTTCCEE--EEEEEEECC-GGGCEEEEEEEBTTSCEE
T ss_pred ----------ccccccceEEcCCCCEEEEecCCCCcEEEEeccCCCCccc--CcEEEEECC-CCCCCCCeeEECCCCCEE
Confidence 23458999999999 899999999999999874 44220 11112 222 123579999999999999
Q ss_pred EEeCCce-EEEEcCC-CceEEEEEeeecCCCcccceEEEEE---CCeEEEEEe-cCcccc-CCccceeeeeec
Q 020019 265 VAGNPSA-RLVESSD-GWETAAVVAKFSGPVHRLATAATVK---DGRVYLNHM-LGFGYP-KKKHALVEAVFS 330 (332)
Q Consensus 265 va~~~~~-~~v~~~d-g~~~~~~~~~~~~~~~~~pt~va~~---~g~lyv~~~-~g~~~~-~~~~~~~~~~~~ 330 (332)
++..... ..++.++ | ++...+..+ ...|++++|. .++|||++. .+.+-. .+++|.+|++|.
T Consensus 214 va~~~~~~v~~~d~~tG----~~~~~i~~p-~~~~t~~~f~g~d~~~L~vt~~~~~~~~~~~~~~p~~G~~f~ 281 (297)
T 3g4e_A 214 VACYNGGRVIRLDPVTG----KRLQTVKLP-VDKTTSCCFGGKNYSEMYVTCARDGMDPEGLLRQPEAGGIFK 281 (297)
T ss_dssp EEEETTTEEEEECTTTC----CEEEEEECS-SSBEEEEEEESGGGCEEEEEEBCTTCCHHHHHHCTTTTCEEE
T ss_pred EEEcCCCEEEEEcCCCc----eEEEEEECC-CCCceEEEEeCCCCCEEEEEcCCcCCChhHccCCCCCceEEE
Confidence 9985432 3345554 7 344444444 3568999994 379999554 444322 456788999985
|
| >2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3 | Back alignment and structure |
|---|
Probab=99.93 E-value=1.9e-23 Score=190.71 Aligned_cols=257 Identities=16% Similarity=0.091 Sum_probs=177.4
Q ss_pred CCccccceEEcCCCCEEEEEecCCeEEEEECCCCCCCccceeeeEEecccCcCCCccceEEEeCCCCeEEEEEeCcCCCc
Q 020019 43 SSFFRECAKWDDSGRRFIVSFLDGGIGQVAVPDDYPPGTVLEEVTLVKDLELTGNGSLGLVLDHPRNRLLVVAADVFGNK 122 (332)
Q Consensus 43 ~~~~pegia~d~~g~~~~~~~~~g~I~~vd~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~vd~~~g~l~v~~~~~~~~~ 122 (332)
.+.+||+++++++|++|+++...++|++++++++. . .+...+ ..|.||+++++ |+|||++....
T Consensus 30 ~~~~pegia~~~~g~lyv~d~~~~~I~~~d~~g~~------~--~~~~~~----~~p~gia~~~d-G~l~vad~~~~--- 93 (306)
T 2p4o_A 30 VNTFLENLASAPDGTIFVTNHEVGEIVSITPDGNQ------Q--IHATVE----GKVSGLAFTSN-GDLVATGWNAD--- 93 (306)
T ss_dssp TTCCEEEEEECTTSCEEEEETTTTEEEEECTTCCE------E--EEEECS----SEEEEEEECTT-SCEEEEEECTT---
T ss_pred CCCCcceEEECCCCCEEEEeCCCCeEEEECCCCce------E--EEEeCC----CCceeEEEcCC-CcEEEEeccCC---
Confidence 34699999999999999999888999999987532 1 233222 37899999996 89999985311
Q ss_pred cceEEEEECCCCcEEEEEecCCCCCCCCCccceEECCCCcEEEEeCCCCeEEEEcCCCc-eEEEecCCCCCCcccccCcc
Q 020019 123 YSAVAAYDLSTWNRLFLTQLSGPSDGKSCADDVTVDAEGNAYVTDVTGSKIWKVGVKGE-FLSIISSPLFTPKEWYKNLV 201 (332)
Q Consensus 123 ~~~l~~~d~~~g~~~~~~~l~~~~~~~~~~ndiavd~dG~lyvtd~~~~~I~~v~~~g~-~~~~~~~~~~~~p~~~~~~~ 201 (332)
..++++||.++|++.....+. ...+++++++.+++++|++|+..+.||++++++. ...+...+.+........+.
T Consensus 94 ~~~v~~~d~~~g~~~~~~~~~----~~~~~~g~~~~~~~~~~v~d~~~g~i~~~d~~~~~~~v~~~~~~~~~~~~~~~~~ 169 (306)
T 2p4o_A 94 SIPVVSLVKSDGTVETLLTLP----DAIFLNGITPLSDTQYLTADSYRGAIWLIDVVQPSGSIWLEHPMLARSNSESVFP 169 (306)
T ss_dssp SCEEEEEECTTSCEEEEEECT----TCSCEEEEEESSSSEEEEEETTTTEEEEEETTTTEEEEEEECGGGSCSSTTCCSC
T ss_pred cceEEEEcCCCCeEEEEEeCC----CccccCcccccCCCcEEEEECCCCeEEEEeCCCCcEeEEEECCccccccccCCCC
Confidence 125888998888876655552 2467899999888889999999999999998743 22221111111000012356
Q ss_pred ccCeEEEccCc-eEEEEeCCCCeEEEEeCCC-CCCccceeEEEEecCCCCCCCCeEEEeCCCeEEEEeCCc-eEEEEcCC
Q 020019 202 GLNGIVYHPDG-FLIVIHTFSGNLFKIDIVD-GVGEGEEIKLIRVAGGPLSFGDGLELLSPTKLVVAGNPS-ARLVESSD 278 (332)
Q Consensus 202 ~~nGi~~~~dG-~Lyva~~~~~~i~~id~~~-~~~~~~~~~~v~~~g~~~~~pdGi~~~~dG~l~va~~~~-~~~v~~~d 278 (332)
.|||| ++|| +|||+++.+++|++|+++. ++.. ..+.+. .+..|+||++|++|+|||++... ...++.++
T Consensus 170 ~pngi--s~dg~~lyv~d~~~~~I~~~~~~~~g~~~--~~~~~~----~~~~P~gi~vd~dG~l~va~~~~~~V~~~~~~ 241 (306)
T 2p4o_A 170 AANGL--KRFGNFLYVSNTEKMLLLRIPVDSTDKPG--EPEIFV----EQTNIDDFAFDVEGNLYGATHIYNSVVRIAPD 241 (306)
T ss_dssp SEEEE--EEETTEEEEEETTTTEEEEEEBCTTSCBC--CCEEEE----ESCCCSSEEEBTTCCEEEECBTTCCEEEECTT
T ss_pred cCCCc--CcCCCEEEEEeCCCCEEEEEEeCCCCCCC--ccEEEe----ccCCCCCeEECCCCCEEEEeCCCCeEEEECCC
Confidence 79999 7787 9999999999999999875 3221 122222 12579999999999999998533 23356667
Q ss_pred CceEEEEEeeecCCCcccceEEEEE-----CCeEEEEEecCccccCCccceeeeeec
Q 020019 279 GWETAAVVAKFSGPVHRLATAATVK-----DGRVYLNHMLGFGYPKKKHALVEAVFS 330 (332)
Q Consensus 279 g~~~~~~~~~~~~~~~~~pt~va~~-----~g~lyv~~~~g~~~~~~~~~~~~~~~~ 330 (332)
| +... ...+..+ +..|+++++. +++|||++..+...+....+..+.+|.
T Consensus 242 G-~~~~-~~~~~~~-~~~p~~~a~~g~~~d~~~LyVt~~~~~~~~~~~~~~~g~v~~ 295 (306)
T 2p4o_A 242 R-STTI-IAQAEQG-VIGSTAVAFGQTEGDCTAIYVVTNGGMFLPPPTGVVPANVVR 295 (306)
T ss_dssp C-CEEE-EECGGGT-CTTEEEEEECCSTTTTTEEEEEECTTSSSCCTTCCCCEEEEE
T ss_pred C-CEEE-Eeecccc-cCCceEEEEecccCCCCEEEEECCCCcccCCCcccccceEEE
Confidence 7 3322 2233322 5789999994 379999887665555334466677763
|
| >2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A* | Back alignment and structure |
|---|
Probab=99.93 E-value=4e-24 Score=196.23 Aligned_cols=251 Identities=14% Similarity=0.122 Sum_probs=170.6
Q ss_pred ceeEEEecCCccccceEEcCCCCEEEEEecCCeEEEEECCCCCCCccceeeeEEecccCc----------------CCCc
Q 020019 35 THVYHYHSSSFFRECAKWDDSGRRFIVSFLDGGIGQVAVPDDYPPGTVLEEVTLVKDLEL----------------TGNG 98 (332)
Q Consensus 35 ~~~i~~~~~~~~pegia~d~~g~~~~~~~~~g~I~~vd~~~~~~~~~~~~~~~~~~~~~~----------------~~~~ 98 (332)
.+.|.+.+.-..||+++++++|++||++..+++|+++++.+++. . .+...... ....
T Consensus 9 ~~~i~~~g~~~~p~~i~~d~~g~~l~v~~~~~~i~~~~~~~~~~-----~--~~~~~~~~~~~~~~~g~~~~~~~~~~~~ 81 (322)
T 2fp8_A 9 LKEILIEAPSYAPNSFTFDSTNKGFYTSVQDGRVIKYEGPNSGF-----V--DFAYASPYWNKAFCENSTDAEKRPLCGR 81 (322)
T ss_dssp -CEEEEECSSSCCCCEECCTTCSSEEEECTTSEEEEECCTTTCE-----E--EEEESCTTCCHHHHTTCCCGGGHHHHCC
T ss_pred cceeecCCccCCceEEEEcCCCCEEEEEcCCCeEEEECCCCCce-----E--EEecccccccccccccccchhccccCCC
Confidence 34566776556999999999999777887789999999876542 1 23211100 0136
Q ss_pred cceEEEeCCCCeEEEEEeCcCCCccceEEEEECCCCcEEEEEecCCCCCCCCCccceEECC-CCcEEEEeCC--------
Q 020019 99 SLGLVLDHPRNRLLVVAADVFGNKYSAVAAYDLSTWNRLFLTQLSGPSDGKSCADDVTVDA-EGNAYVTDVT-------- 169 (332)
Q Consensus 99 ~~gi~vd~~~g~l~v~~~~~~~~~~~~l~~~d~~~g~~~~~~~l~~~~~~~~~~ndiavd~-dG~lyvtd~~-------- 169 (332)
|.||++++++|+|||++.. ..+.+||+++++........ ......+||++++|+ +|++||+|..
T Consensus 82 p~gi~~~~~~g~l~v~d~~------~~i~~~d~~~g~~~~~~~~~-~~~~~~~p~~i~~d~~~G~l~v~d~~~~~~~~~~ 154 (322)
T 2fp8_A 82 TYDISYNLQNNQLYIVDCY------YHLSVVGSEGGHATQLATSV-DGVPFKWLYAVTVDQRTGIVYFTDVSTLYDDRGV 154 (322)
T ss_dssp EEEEEEETTTTEEEEEETT------TEEEEECTTCEECEEEESEE-TTEECSCEEEEEECTTTCCEEEEESCSSCCTTCH
T ss_pred CceEEEcCCCCcEEEEECC------CCEEEEeCCCCEEEEecccC-CCCcccccceEEEecCCCEEEEECCccccccccc
Confidence 8999999734999999863 35889998876544332221 111236799999999 9999999975
Q ss_pred ---------CCeEEEEcCC-CceEEEecCCCCCCcccccCccccCeEEEccCc-eEEEEeCCCCeEEEEeCCCCCCccce
Q 020019 170 ---------GSKIWKVGVK-GEFLSIISSPLFTPKEWYKNLVGLNGIVYHPDG-FLIVIHTFSGNLFKIDIVDGVGEGEE 238 (332)
Q Consensus 170 ---------~~~I~~v~~~-g~~~~~~~~~~~~~p~~~~~~~~~nGi~~~~dG-~Lyva~~~~~~i~~id~~~~~~~~~~ 238 (332)
.+.|++++++ ++...+.. .+..||||++++|| .|||+++.+++|+++++++... + .
T Consensus 155 ~~~~~~~~~~g~v~~~d~~~~~~~~~~~-----------~~~~p~gia~~~dg~~lyv~d~~~~~I~~~~~~~~~~-~-~ 221 (322)
T 2fp8_A 155 QQIMDTSDKTGRLIKYDPSTKETTLLLK-----------ELHVPGGAEVSADSSFVLVAEFLSHQIVKYWLEGPKK-G-T 221 (322)
T ss_dssp HHHHHHTCCCEEEEEEETTTTEEEEEEE-----------EESCCCEEEECTTSSEEEEEEGGGTEEEEEESSSTTT-T-C
T ss_pred ceehcccCCCceEEEEeCCCCEEEEecc-----------CCccCcceEECCCCCEEEEEeCCCCeEEEEECCCCcC-C-c
Confidence 3689999987 44333221 23468999999999 7999999999999999985422 1 2
Q ss_pred eEEEEecCCCCCCCCeEEEeCCCeEEEEeCC-----------ceEEEEcCCCceEEEEEeeecCCCcccceEEEEECCeE
Q 020019 239 IKLIRVAGGPLSFGDGLELLSPTKLVVAGNP-----------SARLVESSDGWETAAVVAKFSGPVHRLATAATVKDGRV 307 (332)
Q Consensus 239 ~~~v~~~g~~~~~pdGi~~~~dG~l~va~~~-----------~~~~v~~~dg~~~~~~~~~~~~~~~~~pt~va~~~g~l 307 (332)
.+.+.. +..|+||++|++|+|||++.. ....++.++| +.........+..+..|+++++.+++|
T Consensus 222 ~~~~~~----~~gP~gi~~d~~G~l~va~~~~~~~~~~~~~~~~v~~~d~~G-~~~~~~~~~~g~~~~~~~~~~~~~g~L 296 (322)
T 2fp8_A 222 AEVLVK----IPNPGNIKRNADGHFWVSSSEELDGNMHGRVDPKGIKFDEFG-NILEVIPLPPPFAGEHFEQIQEHDGLL 296 (322)
T ss_dssp EEEEEE----CSSEEEEEECTTSCEEEEEEEETTSSTTSCEEEEEEEECTTS-CEEEEEECCTTTTTSCCCEEEEETTEE
T ss_pred cceEEe----CCCCCCeEECCCCCEEEEecCcccccccCCCccEEEEECCCC-CEEEEEECCCCCccccceEEEEeCCEE
Confidence 222221 112999999999999999754 2234566777 322222211111267889998899999
Q ss_pred EEEEecCccc
Q 020019 308 YLNHMLGFGY 317 (332)
Q Consensus 308 yv~~~~g~~~ 317 (332)
||++.....+
T Consensus 297 ~v~~~~~~~i 306 (322)
T 2fp8_A 297 YIGTLFHGSV 306 (322)
T ss_dssp EEECSSCSEE
T ss_pred EEeecCCCce
Confidence 9986554443
|
| >3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans} | Back alignment and structure |
|---|
Probab=99.90 E-value=2.7e-21 Score=174.62 Aligned_cols=231 Identities=13% Similarity=0.131 Sum_probs=163.5
Q ss_pred ecCCccccceEEcCCCC-EEEEEecCCeEEEEECCCCCCCccceeeeEEecccCcCCCccceEEEeCCCCeEEEEEeCcC
Q 020019 41 HSSSFFRECAKWDDSGR-RFIVSFLDGGIGQVAVPDDYPPGTVLEEVTLVKDLELTGNGSLGLVLDHPRNRLLVVAADVF 119 (332)
Q Consensus 41 ~~~~~~pegia~d~~g~-~~~~~~~~g~I~~vd~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~vd~~~g~l~v~~~~~~ 119 (332)
......||+++|+++|+ +|+++...++|++++++++ . . .+. .+. ..|.+|+++++ |+||+++..
T Consensus 24 ~~~~~~~eg~~~d~~g~~l~~~~~~~~~i~~~~~~~~-~-----~--~~~-~~~---~~~~~l~~~~d-g~l~v~~~~-- 88 (296)
T 3e5z_A 24 ADGFTWTEGPVYVPARSAVIFSDVRQNRTWAWSDDGQ-L-----S--PEM-HPS---HHQNGHCLNKQ-GHLIACSHG-- 88 (296)
T ss_dssp ECCCSSEEEEEEEGGGTEEEEEEGGGTEEEEEETTSC-E-----E--EEE-SSC---SSEEEEEECTT-CCEEEEETT--
T ss_pred ecCCccccCCeEeCCCCEEEEEeCCCCEEEEEECCCC-e-----E--EEE-CCC---CCcceeeECCC-CcEEEEecC--
Confidence 34445999999999998 7778888899999998865 2 1 333 222 36899999996 999999853
Q ss_pred CCccceEEEEECCCCcEEEEEecCCCCCCCCCccceEECCCCcEEEEeC-----------------CCCeEEEEcCCCce
Q 020019 120 GNKYSAVAAYDLSTWNRLFLTQLSGPSDGKSCADDVTVDAEGNAYVTDV-----------------TGSKIWKVGVKGEF 182 (332)
Q Consensus 120 ~~~~~~l~~~d~~~g~~~~~~~l~~~~~~~~~~ndiavd~dG~lyvtd~-----------------~~~~I~~v~~~g~~ 182 (332)
...|.+||+++|+........ .......++++++|++|++|++|+ ..+.|++++++|+.
T Consensus 89 ---~~~i~~~d~~~g~~~~~~~~~-~~~~~~~~~~i~~d~~G~l~vtd~~~g~~~~~~~~~~~~~~~~~~l~~~~~~g~~ 164 (296)
T 3e5z_A 89 ---LRRLERQREPGGEWESIADSF-EGKKLNSPNDVCLAPDGSLWFSDPTYGIDKPEEGYGGEMELPGRWVFRLAPDGTL 164 (296)
T ss_dssp ---TTEEEEECSTTCCEEEEECEE-TTEECCCCCCEEECTTSCEEEEECSHHHHCGGGSSCCCCCSSSCEEEEECTTSCE
T ss_pred ---CCeEEEEcCCCCcEEEEeecc-CCCCCCCCCCEEECCCCCEEEECCccccccccccccccccCCCcEEEEECCCCCE
Confidence 357999999888876543321 111235799999999999999875 24689999998776
Q ss_pred EEEecCCCCCCcccccCccccCeEEEccCceEEEEeCCCCeEEEEeCC-CCCCccceeEEEEecCCCCCCCCeEEEeCCC
Q 020019 183 LSIISSPLFTPKEWYKNLVGLNGIVYHPDGFLIVIHTFSGNLFKIDIV-DGVGEGEEIKLIRVAGGPLSFGDGLELLSPT 261 (332)
Q Consensus 183 ~~~~~~~~~~~p~~~~~~~~~nGi~~~~dG~Lyva~~~~~~i~~id~~-~~~~~~~~~~~v~~~g~~~~~pdGi~~~~dG 261 (332)
..+.. ....|+||++++||.+++++...++|++++++ +++... ....+ . .....|+||++|++|
T Consensus 165 ~~~~~-----------~~~~~~gi~~s~dg~~lv~~~~~~~i~~~~~~~~g~~~~-~~~~~--~-~~~~~p~~i~~d~~G 229 (296)
T 3e5z_A 165 SAPIR-----------DRVKPNGLAFLPSGNLLVSDTGDNATHRYCLNARGETEY-QGVHF--T-VEPGKTDGLRVDAGG 229 (296)
T ss_dssp EEEEC-----------CCSSEEEEEECTTSCEEEEETTTTEEEEEEECSSSCEEE-EEEEE--C-CSSSCCCSEEEBTTS
T ss_pred EEeec-----------CCCCCccEEECCCCCEEEEeCCCCeEEEEEECCCCcCcC-CCeEe--e-CCCCCCCeEEECCCC
Confidence 55432 12457899999999444999999999999987 342100 01222 2 234679999999999
Q ss_pred eEEEEeCCceEEEEcCCCceEEEEEeeecCCCcccceEEEEE---CCeEEEEEe
Q 020019 262 KLVVAGNPSARLVESSDGWETAAVVAKFSGPVHRLATAATVK---DGRVYLNHM 312 (332)
Q Consensus 262 ~l~va~~~~~~~v~~~dg~~~~~~~~~~~~~~~~~pt~va~~---~g~lyv~~~ 312 (332)
+||++.+.. ..+..++| +....+..+. . |+++++. +++|||++.
T Consensus 230 ~l~v~~~~~-v~~~~~~g----~~~~~~~~~~-~-~~~~~f~~~d~~~L~v~t~ 276 (296)
T 3e5z_A 230 LIWASAGDG-VHVLTPDG----DELGRVLTPQ-T-TSNLCFGGPEGRTLYMTVS 276 (296)
T ss_dssp CEEEEETTE-EEEECTTS----CEEEEEECSS-C-CCEEEEESTTSCEEEEEET
T ss_pred CEEEEcCCe-EEEECCCC----CEEEEEECCC-C-ceeEEEECCCCCEEEEEcC
Confidence 999999443 44566777 2333343343 3 8899983 357999654
|
| >1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1 | Back alignment and structure |
|---|
Probab=99.89 E-value=2.8e-20 Score=166.78 Aligned_cols=233 Identities=12% Similarity=0.057 Sum_probs=166.1
Q ss_pred cccceEEcCCCCEEEEEecCCeEEEEECCCCCCCccceeeeEEecccCc-C--CCccceEEEeCCCCeEEEEEeCcCCCc
Q 020019 46 FRECAKWDDSGRRFIVSFLDGGIGQVAVPDDYPPGTVLEEVTLVKDLEL-T--GNGSLGLVLDHPRNRLLVVAADVFGNK 122 (332)
Q Consensus 46 ~pegia~d~~g~~~~~~~~~g~I~~vd~~~~~~~~~~~~~~~~~~~~~~-~--~~~~~gi~vd~~~g~l~v~~~~~~~~~ 122 (332)
.|.+++++++|++|+++..+++|.+++++ ++. .. .+. ..+. . ...|.++++++.+|++|+++.. .
T Consensus 31 ~p~~v~~~~~g~l~v~~~~~~~i~~~d~~-g~~----~~--~~~-~~~~~~~~~~~p~~i~~~~~~g~l~v~~~~----~ 98 (286)
T 1q7f_A 31 EPSGVAVNAQNDIIVADTNNHRIQIFDKE-GRF----KF--QFG-ECGKRDSQLLYPNRVAVVRNSGDIIVTERS----P 98 (286)
T ss_dssp CEEEEEECTTCCEEEEEGGGTEEEEECTT-SCE----EE--EEC-CBSSSTTCBSSEEEEEEETTTTEEEEEECG----G
T ss_pred CCceEEECCCCCEEEEECCCCEEEEECCC-CcE----EE--Eec-ccCCCcccccCceEEEEEcCCCeEEEEcCC----C
Confidence 79999999999999888778999999987 431 11 222 1110 1 1368999995335999999842 1
Q ss_pred cceEEEEECCCCcEEEEEecCCCCCCCCCccceEECCCCcEEEEeCCCCeEEEEcCCCceEEEecCCCCCCcccccCccc
Q 020019 123 YSAVAAYDLSTWNRLFLTQLSGPSDGKSCADDVTVDAEGNAYVTDVTGSKIWKVGVKGEFLSIISSPLFTPKEWYKNLVG 202 (332)
Q Consensus 123 ~~~l~~~d~~~g~~~~~~~l~~~~~~~~~~ndiavd~dG~lyvtd~~~~~I~~v~~~g~~~~~~~~~~~~~p~~~~~~~~ 202 (332)
...|.+||. +++....+.. .....|+++++|++|++|+++...+.|++++++|+....+.... ....
T Consensus 99 ~~~i~~~d~-~g~~~~~~~~----~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~g~~~~~~~~~~--------~~~~ 165 (286)
T 1q7f_A 99 THQIQIYNQ-YGQFVRKFGA----TILQHPRGVTVDNKGRIIVVECKVMRVIIFDQNGNVLHKFGCSK--------HLEF 165 (286)
T ss_dssp GCEEEEECT-TSCEEEEECT----TTCSCEEEEEECTTSCEEEEETTTTEEEEECTTSCEEEEEECTT--------TCSS
T ss_pred CCEEEEECC-CCcEEEEecC----ccCCCceEEEEeCCCCEEEEECCCCEEEEEcCCCCEEEEeCCCC--------ccCC
Confidence 357899994 5666544432 12367999999999999999999999999999988655443211 2346
Q ss_pred cCeEEEccCceEEEEeCCCCeEEEEeCCCCCCccceeEEEEecCCCCCCCCeEEEeCCCeEEEEeCCc--eEEEEcCCCc
Q 020019 203 LNGIVYHPDGFLIVIHTFSGNLFKIDIVDGVGEGEEIKLIRVAGGPLSFGDGLELLSPTKLVVAGNPS--ARLVESSDGW 280 (332)
Q Consensus 203 ~nGi~~~~dG~Lyva~~~~~~i~~id~~~~~~~~~~~~~v~~~g~~~~~pdGi~~~~dG~l~va~~~~--~~~v~~~dg~ 280 (332)
|++|+++++|+||+++..+++|+++++++. .+..+...+ .+..|.+|+++++|+||+++... ...++..+|.
T Consensus 166 p~~i~~~~~g~l~v~~~~~~~i~~~~~~g~-----~~~~~~~~g-~~~~p~~i~~d~~G~l~v~~~~~~~~i~~~~~~g~ 239 (286)
T 1q7f_A 166 PNGVVVNDKQEIFISDNRAHCVKVFNYEGQ-----YLRQIGGEG-ITNYPIGVGINSNGEILIADNHNNFNLTIFTQDGQ 239 (286)
T ss_dssp EEEEEECSSSEEEEEEGGGTEEEEEETTCC-----EEEEESCTT-TSCSEEEEEECTTCCEEEEECSSSCEEEEECTTSC
T ss_pred cEEEEECCCCCEEEEECCCCEEEEEcCCCC-----EEEEEccCC-ccCCCcEEEECCCCCEEEEeCCCCEEEEEECCCCC
Confidence 889999999999999999999999998643 444444332 35689999999999999998432 3345667773
Q ss_pred eEEEEEeeecCCCcccceEEEE-ECCeEEEEEe
Q 020019 281 ETAAVVAKFSGPVHRLATAATV-KDGRVYLNHM 312 (332)
Q Consensus 281 ~~~~~~~~~~~~~~~~pt~va~-~~g~lyv~~~ 312 (332)
....+.. ......|.++++ .+|+|||++.
T Consensus 240 ~~~~~~~---~~~~~~~~~i~~~~~g~l~vs~~ 269 (286)
T 1q7f_A 240 LISALES---KVKHAQCFDVALMDDGSVVLASK 269 (286)
T ss_dssp EEEEEEE---SSCCSCEEEEEEETTTEEEEEET
T ss_pred EEEEEcc---cCCCCcceeEEECCCCcEEEECC
Confidence 2222222 122445888999 7899999863
|
| >3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV} | Back alignment and structure |
|---|
Probab=99.89 E-value=1.2e-20 Score=171.57 Aligned_cols=229 Identities=17% Similarity=0.196 Sum_probs=160.7
Q ss_pred ecCCccccceEEcCCCC-EEEEEecCCeEEEEECCCCCCCccceeeeEEecccCcCCCccceEEEeCCCCeEEEEEeCcC
Q 020019 41 HSSSFFRECAKWDDSGR-RFIVSFLDGGIGQVAVPDDYPPGTVLEEVTLVKDLELTGNGSLGLVLDHPRNRLLVVAADVF 119 (332)
Q Consensus 41 ~~~~~~pegia~d~~g~-~~~~~~~~g~I~~vd~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~vd~~~g~l~v~~~~~~ 119 (332)
.....++||++|+++|+ +|+++..+++|++++++ ++. . .+. .+. ..+++++++++ |+||+++..
T Consensus 41 ~~~~~~~egp~~~~~g~~l~~~d~~~~~i~~~~~~-g~~-----~--~~~-~~~---~~~~gl~~d~d-G~l~v~~~~-- 105 (305)
T 3dr2_A 41 YDQATWSEGPAWWEAQRTLVWSDLVGRRVLGWRED-GTV-----D--VLL-DAT---AFTNGNAVDAQ-QRLVHCEHG-- 105 (305)
T ss_dssp ECCCSSEEEEEEEGGGTEEEEEETTTTEEEEEETT-SCE-----E--EEE-ESC---SCEEEEEECTT-SCEEEEETT--
T ss_pred ecCCcCccCCeEeCCCCEEEEEECCCCEEEEEeCC-CCE-----E--EEe-CCC---CccceeeECCC-CCEEEEECC--
Confidence 44445899999999998 77777888999999984 441 1 233 222 36899999996 999999753
Q ss_pred CCccceEEEEECCCCcEEEEEecCCCCCCCCCccceEECCCCcEEEEeCC-----------------CCeEEEEcCC-Cc
Q 020019 120 GNKYSAVAAYDLSTWNRLFLTQLSGPSDGKSCADDVTVDAEGNAYVTDVT-----------------GSKIWKVGVK-GE 181 (332)
Q Consensus 120 ~~~~~~l~~~d~~~g~~~~~~~l~~~~~~~~~~ndiavd~dG~lyvtd~~-----------------~~~I~~v~~~-g~ 181 (332)
...|.+||.+ |+........ .......||++++|++|++|+||.. .+.|++++++ |+
T Consensus 106 ---~~~v~~~~~~-g~~~~~~~~~-~~~~~~~~~~i~~d~dG~l~~td~~~g~~~~~~~~~~~~~~~~~~v~~~d~~~g~ 180 (305)
T 3dr2_A 106 ---RRAITRSDAD-GQAHLLVGRY-AGKRLNSPNDLIVARDGAIWFTDPPFGLRKPSQGCPADPELAHHSVYRLPPDGSP 180 (305)
T ss_dssp ---TTEEEEECTT-SCEEEEECEE-TTEECSCCCCEEECTTSCEEEECCSGGGSCGGGSCCCCCSSSCEEEEEECSSSCC
T ss_pred ---CCEEEEECCC-CCEEEEEecc-CCCccCCCCCEEECCCCCEEEeCcCCCccccccccccccccCCCeEEEEcCCCCc
Confidence 3578999986 6655433221 1112357999999999999999741 3689999985 66
Q ss_pred eEEEecCCCCCCcccccCccccCeEEEccCc-eEEEEeCCC-----CeEEEEeCCCCCCccceeEEEEecCCCCCCCCeE
Q 020019 182 FLSIISSPLFTPKEWYKNLVGLNGIVYHPDG-FLIVIHTFS-----GNLFKIDIVDGVGEGEEIKLIRVAGGPLSFGDGL 255 (332)
Q Consensus 182 ~~~~~~~~~~~~p~~~~~~~~~nGi~~~~dG-~Lyva~~~~-----~~i~~id~~~~~~~~~~~~~v~~~g~~~~~pdGi 255 (332)
...+. . ...|||+++++|| .||+++... ++|++++++.+.. ...+.+ .. .....|+||
T Consensus 181 ~~~~~---~---------~~~p~gl~~spdg~~lyv~~~~~~~~~~~~i~~~~~~~~~l--~~~~~~-~~-~~~~~pdgi 244 (305)
T 3dr2_A 181 LQRMA---D---------LDHPNGLAFSPDEQTLYVSQTPEQGHGSVEITAFAWRDGAL--HDRRHF-AS-VPDGLPDGF 244 (305)
T ss_dssp CEEEE---E---------ESSEEEEEECTTSSEEEEEECCC---CCCEEEEEEEETTEE--EEEEEE-EC-CSSSCCCSE
T ss_pred EEEEe---c---------CCCCcceEEcCCCCEEEEEecCCcCCCCCEEEEEEecCCCc--cCCeEE-EE-CCCCCCCeE
Confidence 55432 1 2357899999999 899999874 7899999875421 011111 11 123579999
Q ss_pred EEeCCCeEEEEeCCceEEEEcCCCceEEEEEeeecCCCcccceEEEE--ECCeEEEEEe
Q 020019 256 ELLSPTKLVVAGNPSARLVESSDGWETAAVVAKFSGPVHRLATAATV--KDGRVYLNHM 312 (332)
Q Consensus 256 ~~~~dG~l~va~~~~~~~v~~~dg~~~~~~~~~~~~~~~~~pt~va~--~~g~lyv~~~ 312 (332)
++|++|+||+++... ..++.++|. +...+..+. .|+++++ ++++|||++.
T Consensus 245 ~~d~~G~lwv~~~~g-v~~~~~~g~----~~~~~~~~~--~~~~~~f~~d~~~L~it~~ 296 (305)
T 3dr2_A 245 CVDRGGWLWSSSGTG-VCVFDSDGQ----LLGHIPTPG--TASNCTFDQAQQRLFITGG 296 (305)
T ss_dssp EECTTSCEEECCSSE-EEEECTTSC----EEEEEECSS--CCCEEEECTTSCEEEEEET
T ss_pred EECCCCCEEEecCCc-EEEECCCCC----EEEEEECCC--ceeEEEEeCCCCEEEEEcC
Confidence 999999999999654 445677883 333333343 4889999 4578999764
|
| >2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413} | Back alignment and structure |
|---|
Probab=99.88 E-value=2.9e-20 Score=172.19 Aligned_cols=253 Identities=16% Similarity=0.184 Sum_probs=166.1
Q ss_pred ccccceEEcCCCCEEEEE-ec-CC--eEEEEECCCCCCCccceeeeEEec---ccCcCCCccceEEEeCCCCeEEEEEeC
Q 020019 45 FFRECAKWDDSGRRFIVS-FL-DG--GIGQVAVPDDYPPGTVLEEVTLVK---DLELTGNGSLGLVLDHPRNRLLVVAAD 117 (332)
Q Consensus 45 ~~pegia~d~~g~~~~~~-~~-~g--~I~~vd~~~~~~~~~~~~~~~~~~---~~~~~~~~~~gi~vd~~~g~l~v~~~~ 117 (332)
..|++++++++|++|++. .+ .+ +|++++ +++. . .+.. .+...-..|.||++|++ |+|||++..
T Consensus 17 ~~p~~va~~~~g~~~v~~~~~~~~~~~l~~~~--~g~~-----~--~~p~~~~~~~~~~~~p~gv~~d~~-g~L~v~D~g 86 (343)
T 2qe8_A 17 LAPGNITLTPDGRLFLSLHQFYQPEMQVAELT--QDGL-----I--PFPPQSGNAIITFDTVLGIKSDGN-GIVWMLDNG 86 (343)
T ss_dssp SCEEEEEECTTSCEEEEECGGGCCSCSEEEEE--TTEE-----E--ESCCCCSSCCCCCSCEEEEEECSS-SEEEEEECH
T ss_pred CCcceEEECCCCCEEEEeCCCCCCceEEEEEC--CCCe-----e--cCCCcccCcccceeEeeEEEEcCC-CcEEEEcCC
Confidence 589999999999999886 32 34 899998 3431 1 1211 11101137999999997 999999853
Q ss_pred cCCCccceEEEEECCCCcEEEEEecCCC-CCCCCCccceEECCC-CcEEEEeC---CCCeEEEEcCC-CceEEEecCC-C
Q 020019 118 VFGNKYSAVAAYDLSTWNRLFLTQLSGP-SDGKSCADDVTVDAE-GNAYVTDV---TGSKIWKVGVK-GEFLSIISSP-L 190 (332)
Q Consensus 118 ~~~~~~~~l~~~d~~~g~~~~~~~l~~~-~~~~~~~ndiavd~d-G~lyvtd~---~~~~I~~v~~~-g~~~~~~~~~-~ 190 (332)
.......+|.+||++++++...+.++.. .....+++++++|++ |.+|++|+ ..+.|++++.+ |+..+++... .
T Consensus 87 ~~~~~~~~i~~~d~~tg~~~~~~~~~~~~~~~~~~~~~v~vd~~~g~~yvtd~~~~~~~~i~v~d~~~g~~~r~~~~~~~ 166 (343)
T 2qe8_A 87 NQSKSVPKLVAWDTLNNQLSRVIYLPPPITLSNSFVNDLAVDLIHNFVYISDPAPDDKAALIRVDLQTGLAARVLQGYPG 166 (343)
T ss_dssp HHHTSCCEEEEEETTTTEEEEEEECCTTTSCTTCCCCEEEEETTTTEEEEEECCSGGGCEEEEEETTTCCEEEECTTCTT
T ss_pred CCcCCCCeEEEEECCCCeEEEEEECChhhcccccccceEEEecCCCEEEEEcCccCCCCeEEEEECCCCCEEEEecCCCc
Confidence 1000025799999999997777776422 112367899999975 68999999 78999999986 6665554321 1
Q ss_pred CCC-cc--ccc---------------CccccCeEEEccCc-eEEEEeCCCCeEEEEeCC---CCCCc-cceeEEEEecCC
Q 020019 191 FTP-KE--WYK---------------NLVGLNGIVYHPDG-FLIVIHTFSGNLFKIDIV---DGVGE-GEEIKLIRVAGG 247 (332)
Q Consensus 191 ~~~-p~--~~~---------------~~~~~nGi~~~~dG-~Lyva~~~~~~i~~id~~---~~~~~-~~~~~~v~~~g~ 247 (332)
+.. +. ... -..++|||++++|| .||+++..+++||+++.. .+... .+....+...|
T Consensus 167 ~~~~~~~~~~~g~~~~~~~~~g~~~~~~~~~~gia~s~dg~~ly~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~g- 245 (343)
T 2qe8_A 167 IAPEDIDLVIDGVPVQIGQPDGTVIRPHLGVNGIVLDAENEWLYLSPMHSTSMYRIKSADLSNLQLTDAELGSKIERYS- 245 (343)
T ss_dssp TSCCSCCCEETTEECBEECTTSCEECCCCCEEEEEECTTSCEEEEEESSCSEEEEEEHHHHTCTTCCHHHHHTTCEEEE-
T ss_pred ccccccceeECCEEEEeccCCCceeceecccceeEeccCCCEEEEEeCCCCeEEEEEHHHhcCCCCChhhhhcceEecc-
Confidence 100 00 000 11468999999999 999999999999999864 12110 00000011111
Q ss_pred CCCCCCeEEEeCCCeEEEEeCCce-EEEEcC-CCceEEEEEeeecCCCcccceEEEE-ECCeEEEEEe
Q 020019 248 PLSFGDGLELLSPTKLVVAGNPSA-RLVESS-DGWETAAVVAKFSGPVHRLATAATV-KDGRVYLNHM 312 (332)
Q Consensus 248 ~~~~pdGi~~~~dG~l~va~~~~~-~~v~~~-dg~~~~~~~~~~~~~~~~~pt~va~-~~g~lyv~~~ 312 (332)
..+.|+||++|++|+||+++.... ..+..+ +| +...+.. .+.+.+|+++++ .+++|||++.
T Consensus 246 ~~g~pdgia~d~~G~l~va~~~~~~V~~~d~~~G-~~~~~~~---~~~~~~p~~va~~~~g~l~v~~~ 309 (343)
T 2qe8_A 246 EKPICDGISIDKDHNIYVGDLAHSAIGVITSADR-AYKLLVT---DEKLSWTDSFNFGSDGYLYFDCN 309 (343)
T ss_dssp ECCSCSCEEECTTCCEEEEEGGGTEEEEEETTTT-EEEEEEE---CGGGSCEEEEEECTTSCEEEEEC
T ss_pred cCCCCceEEECCCCCEEEEccCCCeEEEEECCCC-CEEEEEE---CCceecCCeeEECCCCcEEEEeC
Confidence 224799999999999999985432 334455 77 4333332 345788999999 7899999543
|
| >3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A* | Back alignment and structure |
|---|
Probab=99.88 E-value=9.2e-21 Score=174.41 Aligned_cols=248 Identities=15% Similarity=0.114 Sum_probs=164.8
Q ss_pred cccceEEcCCCCEEEEEecC------------------------CeEEEEECCCCCCCccceeeeEEecccCcCCCccce
Q 020019 46 FRECAKWDDSGRRFIVSFLD------------------------GGIGQVAVPDDYPPGTVLEEVTLVKDLELTGNGSLG 101 (332)
Q Consensus 46 ~pegia~d~~g~~~~~~~~~------------------------g~I~~vd~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 101 (332)
.|.+++++++|++|+++..+ ++|+++|+.+++. . .......+ ..|.|
T Consensus 25 ~v~~va~d~~G~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~g~~----~---~~~~~~~~--~~p~g 95 (329)
T 3fvz_A 25 QVSGVALDSKNNLVIFHRGDHVWDGNSFDSKFVYQQRGLGPIEEDTILVIDPNNAEI----L---QSSGKNLF--YLPHG 95 (329)
T ss_dssp CEEEEEECTTCCEEEEECTTCCCCTTSBCTTSCBSCGGGCSCCSCCEEEECTTTCCE----E---EEECTTTC--SSEEE
T ss_pred CceEEEECCCCCEEEEeCCCCeEEeeccCcceeecccccccccCCcEEEEECCCCeE----E---eccCCCcc--CCceE
Confidence 68899999999999887544 4799999876762 1 12211111 37999
Q ss_pred EEEeCCCCeEEEEEeCcCCCccceEEEEECCCCc-EEEEEecCC-CC---CCCCCccceEECC-CCcEEEEeC-CCCeEE
Q 020019 102 LVLDHPRNRLLVVAADVFGNKYSAVAAYDLSTWN-RLFLTQLSG-PS---DGKSCADDVTVDA-EGNAYVTDV-TGSKIW 174 (332)
Q Consensus 102 i~vd~~~g~l~v~~~~~~~~~~~~l~~~d~~~g~-~~~~~~l~~-~~---~~~~~~ndiavd~-dG~lyvtd~-~~~~I~ 174 (332)
|+++++ |+||+++.. ..+|.+||++... ....+.-.+ ++ .....|+++++++ +|++||+|+ .+++|+
T Consensus 96 ia~d~~-g~l~v~d~~-----~~~v~~~~~~g~~~~~~~~~~~~~~g~~~~~~~~P~~ia~~~~~g~lyv~d~~~~~~I~ 169 (329)
T 3fvz_A 96 LSIDTD-GNYWVTDVA-----LHQVFKLDPHSKEGPLLILGRSMQPGSDQNHFCQPTDVAVEPSTGAVFVSDGYCNSRIV 169 (329)
T ss_dssp EEECTT-SCEEEEETT-----TTEEEEECTTCSSCCSEEESBTTBCCCSTTCCSSEEEEEECTTTCCEEEEECSSCCEEE
T ss_pred EEECCC-CCEEEEECC-----CCEEEEEeCCCCeEEEEEecccCCCCCCccccCCCcEEEEeCCCCeEEEEeCCCCCeEE
Confidence 999996 899999864 4579999986542 222222110 11 1235799999999 799999997 799999
Q ss_pred EEcCCCceEEEecCCCCCCcccccCccccCeEEEccC-ceEEEEeCCCCeEEEEeCCCCCCccceeEEEEecCCCCCCCC
Q 020019 175 KVGVKGEFLSIISSPLFTPKEWYKNLVGLNGIVYHPD-GFLIVIHTFSGNLFKIDIVDGVGEGEEIKLIRVAGGPLSFGD 253 (332)
Q Consensus 175 ~v~~~g~~~~~~~~~~~~~p~~~~~~~~~nGi~~~~d-G~Lyva~~~~~~i~~id~~~~~~~~~~~~~v~~~g~~~~~pd 253 (332)
+++++|+....+.............+..|+||+++++ |.|||++..+++|.++++++++ .+..+...+ ....|.
T Consensus 170 ~~~~~g~~~~~~~~~g~~~~~~~~~~~~p~gia~d~~~g~l~v~d~~~~~I~~~~~~~G~----~~~~~~~~~-~~~~~~ 244 (329)
T 3fvz_A 170 QFSPSGKFVTQWGEESSGSSPRPGQFSVPHSLALVPHLDQLCVADRENGRIQCFKTDTKE----FVREIKHAS-FGRNVF 244 (329)
T ss_dssp EECTTSCEEEEECEECCSSSCCTTEESCEEEEEEETTTTEEEEEETTTTEEEEEETTTCC----EEEEECCTT-TTTCEE
T ss_pred EEcCCCCEEEEeccCCCCCCCCCcccCCCcEEEEECCCCEEEEEECCCCEEEEEECCCCc----EEEEEeccc-cCCCcc
Confidence 9999998765543211100000013456999999999 6999999999999999998662 455554331 123444
Q ss_pred eEEEeC------CCeEEEEeCC--ceEEEEcCCCceEEEEEeeec--CCCcccceEEEE-ECCeEEEEEecCccc
Q 020019 254 GLELLS------PTKLVVAGNP--SARLVESSDGWETAAVVAKFS--GPVHRLATAATV-KDGRVYLNHMLGFGY 317 (332)
Q Consensus 254 Gi~~~~------dG~l~va~~~--~~~~v~~~dg~~~~~~~~~~~--~~~~~~pt~va~-~~g~lyv~~~~g~~~ 317 (332)
++++.| +|++|+++.. ...++...+| +++..+. ...+..|.++++ .+|.|||++.....+
T Consensus 245 ~~~~~pg~~~~~~g~~~v~~~~~~~v~~~~~~~g----~~~~~~~~~~~~~~~p~~ia~~~dG~lyvad~~~~~I 315 (329)
T 3fvz_A 245 AISYIPGFLFAVNGKPYFGDQEPVQGFVMNFSSG----EIIDVFKPVRKHFDMPHDIVASEDGTVYIGDAHTNTV 315 (329)
T ss_dssp EEEEETTEEEEEECCCCTTCSCCCCEEEEETTTC----CEEEEECCSSSCCSSEEEEEECTTSEEEEEESSSCCE
T ss_pred eeeecCCEEEEeCCCEEeccCCCcEEEEEEcCCC----eEEEEEcCCCCccCCeeEEEECCCCCEEEEECCCCEE
Confidence 555555 5666665432 2334445666 2333332 234788999999 778999988765543
|
| >1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A | Back alignment and structure |
|---|
Probab=99.88 E-value=7.2e-21 Score=168.69 Aligned_cols=231 Identities=15% Similarity=0.166 Sum_probs=160.3
Q ss_pred cccceEEcCCCCEEE-EEecCCeEEEEECCCCCCCccceeeeEEecccCcCCCccceEEEeCCCCeEEEEEeCcCCCccc
Q 020019 46 FRECAKWDDSGRRFI-VSFLDGGIGQVAVPDDYPPGTVLEEVTLVKDLELTGNGSLGLVLDHPRNRLLVVAADVFGNKYS 124 (332)
Q Consensus 46 ~pegia~d~~g~~~~-~~~~~g~I~~vd~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~vd~~~g~l~v~~~~~~~~~~~ 124 (332)
.|++++++++|++|+ ++...++|++++..+... ....... ...|.+|+++++ |++|+++. .+
T Consensus 25 ~p~~i~~~~~g~l~v~~~~~~~~i~~~~~~~~~~--------~~~~~~~--~~~p~~i~~~~~-g~l~v~~~------~~ 87 (270)
T 1rwi_B 25 SPSGVAVDSAGNVYVTSEGMYGRVVKLATGSTGT--------TVLPFNG--LYQPQGLAVDGA-GTVYVTDF------NN 87 (270)
T ss_dssp CEEEEEECTTCCEEEEECSSSCEEEEECC-------------EECCCCS--CCSCCCEEECTT-CCEEEEET------TT
T ss_pred CccceEECCCCCEEEEccCCCCcEEEecCCCccc--------ceEeeCC--cCCcceeEECCC-CCEEEEcC------CC
Confidence 899999999999888 557789999998765431 2221111 137899999996 88999975 24
Q ss_pred eEEEEECCCCcEEEEEecCCCCCCCCCccceEECCCCcEEEEeCCCCeEEEEcCCCceEEEecCCCCCCcccccCccccC
Q 020019 125 AVAAYDLSTWNRLFLTQLSGPSDGKSCADDVTVDAEGNAYVTDVTGSKIWKVGVKGEFLSIISSPLFTPKEWYKNLVGLN 204 (332)
Q Consensus 125 ~l~~~d~~~g~~~~~~~l~~~~~~~~~~ndiavd~dG~lyvtd~~~~~I~~v~~~g~~~~~~~~~~~~~p~~~~~~~~~n 204 (332)
.|.+||++++.... ... .+...|+++++|++|++|+++...+.|++++............ ....|+
T Consensus 88 ~i~~~d~~~~~~~~-~~~----~~~~~p~~i~~~~~g~l~v~~~~~~~i~~~~~~~~~~~~~~~~---------~~~~p~ 153 (270)
T 1rwi_B 88 RVVTLAAGSNNQTV-LPF----DGLNYPEGLAVDTQGAVYVADRGNNRVVKLAAGSKTQTVLPFT---------GLNDPD 153 (270)
T ss_dssp EEEEECTTCSCCEE-CCC----CSCSSEEEEEECTTCCEEEEEGGGTEEEEECTTCCSCEECCCC---------SCCSCC
T ss_pred EEEEEeCCCceEee-eec----CCcCCCcceEECCCCCEEEEECCCCEEEEEECCCceeEeeccc---------cCCCce
Confidence 78999987654422 211 1236799999999999999999999999997654322221111 234689
Q ss_pred eEEEccCceEEEEeCCCCeEEEEeCCCCCCccceeEEEEecCCCCCCCCeEEEeCCCeEEEEeCCc-eEEEEcCCCceEE
Q 020019 205 GIVYHPDGFLIVIHTFSGNLFKIDIVDGVGEGEEIKLIRVAGGPLSFGDGLELLSPTKLVVAGNPS-ARLVESSDGWETA 283 (332)
Q Consensus 205 Gi~~~~dG~Lyva~~~~~~i~~id~~~~~~~~~~~~~v~~~g~~~~~pdGi~~~~dG~l~va~~~~-~~~v~~~dg~~~~ 283 (332)
+|+++++|+||+++..+++|+++++++. ...... . ..+..|.+|+++++|+||+++... ...+...++ ...
T Consensus 154 ~i~~~~~g~l~v~~~~~~~i~~~~~~~~-----~~~~~~-~-~~~~~p~~i~~d~~g~l~v~~~~~~~v~~~~~~~-~~~ 225 (270)
T 1rwi_B 154 GVAVDNSGNVYVTDTDNNRVVKLEAESN-----NQVVLP-F-TDITAPWGIAVDEAGTVYVTEHNTNQVVKLLAGS-TTS 225 (270)
T ss_dssp CEEECTTCCEEEEEGGGTEEEEECTTTC-----CEEECC-C-SSCCSEEEEEECTTCCEEEEETTTSCEEEECTTC-SCC
T ss_pred eEEEeCCCCEEEEECCCCEEEEEecCCC-----ceEeec-c-cCCCCceEEEECCCCCEEEEECCCCcEEEEcCCC-Ccc
Confidence 9999999999999999999999998865 222221 1 234679999999999999998432 233445555 221
Q ss_pred EEEeeecCCCcccceEEEE-ECCeEEEEEecCcccc
Q 020019 284 AVVAKFSGPVHRLATAATV-KDGRVYLNHMLGFGYP 318 (332)
Q Consensus 284 ~~~~~~~~~~~~~pt~va~-~~g~lyv~~~~g~~~~ 318 (332)
.. .....+..|.++++ .+|+|||++.....+.
T Consensus 226 ~~---~~~~~~~~p~~i~~~~~g~l~v~~~~~~~v~ 258 (270)
T 1rwi_B 226 TV---LPFTGLNTPLAVAVDSDRTVYVADRGNDRVV 258 (270)
T ss_dssp EE---CCCCSCSCEEEEEECTTCCEEEEEGGGTEEE
T ss_pred ee---eccCCCCCceeEEECCCCCEEEEECCCCEEE
Confidence 11 12223577999999 6789999877665543
|
| >1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1 | Back alignment and structure |
|---|
Probab=99.88 E-value=5.9e-20 Score=163.83 Aligned_cols=216 Identities=15% Similarity=0.152 Sum_probs=152.3
Q ss_pred ccccceEEcCC-CCEEEEEecCCeEEEEECCCCCCCccceeeeEEecccCcCCCccceEEEeCCCCeEEEEEeCcCCCcc
Q 020019 45 FFRECAKWDDS-GRRFIVSFLDGGIGQVAVPDDYPPGTVLEEVTLVKDLELTGNGSLGLVLDHPRNRLLVVAADVFGNKY 123 (332)
Q Consensus 45 ~~pegia~d~~-g~~~~~~~~~g~I~~vd~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~vd~~~g~l~v~~~~~~~~~~ 123 (332)
..|+++++|++ +++|+++...++|++++++++.. . .+.. .+. ..|.+|++|+++++||+++.. .
T Consensus 36 ~~~~gi~~d~~~~~ly~~d~~~~~I~~~~~~g~~~-----~--~~~~-~~~--~~p~~ia~d~~~~~lyv~d~~-----~ 100 (267)
T 1npe_A 36 KVIIGLAFDCVDKVVYWTDISEPSIGRASLHGGEP-----T--TIIR-QDL--GSPEGIALDHLGRTIFWTDSQ-----L 100 (267)
T ss_dssp EEEEEEEEETTTTEEEEEETTTTEEEEEESSSCCC-----E--EEEC-TTC--CCEEEEEEETTTTEEEEEETT-----T
T ss_pred CcEEEEEEecCCCEEEEEECCCCEEEEEecCCCCc-----E--EEEE-CCC--CCccEEEEEecCCeEEEEECC-----C
Confidence 47899999986 56777778789999999875542 2 3332 222 379999999876899999864 4
Q ss_pred ceEEEEECCCCcEEEEEecCCCCCCCCCccceEECCC-CcEEEEeCC--CCeEEEEcCCCceEEEecCCCCCCcccccCc
Q 020019 124 SAVAAYDLSTWNRLFLTQLSGPSDGKSCADDVTVDAE-GNAYVTDVT--GSKIWKVGVKGEFLSIISSPLFTPKEWYKNL 200 (332)
Q Consensus 124 ~~l~~~d~~~g~~~~~~~l~~~~~~~~~~ndiavd~d-G~lyvtd~~--~~~I~~v~~~g~~~~~~~~~~~~~p~~~~~~ 200 (332)
.+|.+++++......... .+...|+++++|++ |++|++|.. .+.|++++.+|+....+... ..
T Consensus 101 ~~I~~~~~~g~~~~~~~~-----~~~~~P~~i~vd~~~g~lyv~~~~~~~~~I~~~~~dg~~~~~~~~~---------~~ 166 (267)
T 1npe_A 101 DRIEVAKMDGTQRRVLFD-----TGLVNPRGIVTDPVRGNLYWTDWNRDNPKIETSHMDGTNRRILAQD---------NL 166 (267)
T ss_dssp TEEEEEETTSCSCEEEEC-----SSCSSEEEEEEETTTTEEEEEECCSSSCEEEEEETTSCCCEEEECT---------TC
T ss_pred CEEEEEEcCCCCEEEEEE-----CCCCCccEEEEeeCCCEEEEEECCCCCcEEEEEecCCCCcEEEEEC---------CC
Confidence 578999987543322221 12368999999995 789999987 68999999998754333211 23
Q ss_pred cccCeEEEccCc-eEEEEeCCCCeEEEEeCCCCCCccceeEEEEecCCCCCCCCeEEEeCCCeEEEEeCCc--eEEEEcC
Q 020019 201 VGLNGIVYHPDG-FLIVIHTFSGNLFKIDIVDGVGEGEEIKLIRVAGGPLSFGDGLELLSPTKLVVAGNPS--ARLVESS 277 (332)
Q Consensus 201 ~~~nGi~~~~dG-~Lyva~~~~~~i~~id~~~~~~~~~~~~~v~~~g~~~~~pdGi~~~~dG~l~va~~~~--~~~v~~~ 277 (332)
..|+||++++++ +|||++..+++|+++++++. ....+. . .+..|+||+++ ++.||+++... ...+...
T Consensus 167 ~~P~gia~d~~~~~lyv~d~~~~~I~~~~~~g~-----~~~~~~-~--~~~~P~gi~~d-~~~lyva~~~~~~v~~~d~~ 237 (267)
T 1npe_A 167 GLPNGLTFDAFSSQLCWVDAGTHRAECLNPAQP-----GRRKVL-E--GLQYPFAVTSY-GKNLYYTDWKTNSVIAMDLA 237 (267)
T ss_dssp SCEEEEEEETTTTEEEEEETTTTEEEEEETTEE-----EEEEEE-E--CCCSEEEEEEE-TTEEEEEETTTTEEEEEETT
T ss_pred CCCcEEEEcCCCCEEEEEECCCCEEEEEecCCC-----ceEEEe-c--CCCCceEEEEe-CCEEEEEECCCCeEEEEeCC
Confidence 468999999986 99999999999999999854 222222 2 24679999998 68999998543 3333344
Q ss_pred CCceEEEEEeeecCCCcccceEEEE
Q 020019 278 DGWETAAVVAKFSGPVHRLATAATV 302 (332)
Q Consensus 278 dg~~~~~~~~~~~~~~~~~pt~va~ 302 (332)
+| ++...+.......|.++++
T Consensus 238 ~g----~~~~~i~~g~~~~p~gi~~ 258 (267)
T 1npe_A 238 IS----KEMDTFHPHKQTRLYGITI 258 (267)
T ss_dssp TT----EEEEEECCSSCCCCCCEEE
T ss_pred CC----CceEEEccccccccceeee
Confidence 46 3444444332345888887
|
| >2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii} | Back alignment and structure |
|---|
Probab=99.87 E-value=2.3e-19 Score=160.72 Aligned_cols=235 Identities=10% Similarity=0.047 Sum_probs=169.5
Q ss_pred EEEecCCccccceEEcCCCCEEEEEecCCeEEEEECCCCCCCccceeeeEEecccCcCCCccceEEEeCCCCeEEEEEeC
Q 020019 38 YHYHSSSFFRECAKWDDSGRRFIVSFLDGGIGQVAVPDDYPPGTVLEEVTLVKDLELTGNGSLGLVLDHPRNRLLVVAAD 117 (332)
Q Consensus 38 i~~~~~~~~pegia~d~~g~~~~~~~~~g~I~~vd~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~vd~~~g~l~v~~~~ 117 (332)
+.+......|++++++++|++|++....+.|.++++. ++. . .+. .+. ....|.+|+++++ |++|+++..
T Consensus 13 ~~~~~~~~~p~~i~~d~~g~l~v~~~~~~~v~~~~~~-~~~-----~--~~~-~~~-~~~~~~~i~~~~~-g~l~v~~~~ 81 (300)
T 2qc5_A 13 FNLSIPDSGPYGITSSEDGKVWFTQHKANKISSLDQS-GRI-----K--EFE-VPT-PDAKVMCLIVSSL-GDIWFTENG 81 (300)
T ss_dssp EECSSTTCCEEEEEECTTSCEEEEETTTTEEEEECTT-SCE-----E--EEE-CSS-TTCCEEEEEECTT-SCEEEEETT
T ss_pred EecCCCCCCcceeeECCCCCEEEEcCCCCeEEEECCC-Cce-----E--EEE-CCC-CCCcceeEEECCC-CCEEEEecC
Confidence 3334445599999999999999988778999999987 542 1 222 121 1137899999986 999999753
Q ss_pred cCCCccceEEEEECCCCcEEEEEecCCCCCCCCCccceEECCCCcEEEEeCCCCeEEEEcCCCceEEEecCCCCCCcccc
Q 020019 118 VFGNKYSAVAAYDLSTWNRLFLTQLSGPSDGKSCADDVTVDAEGNAYVTDVTGSKIWKVGVKGEFLSIISSPLFTPKEWY 197 (332)
Q Consensus 118 ~~~~~~~~l~~~d~~~g~~~~~~~l~~~~~~~~~~ndiavd~dG~lyvtd~~~~~I~~v~~~g~~~~~~~~~~~~~p~~~ 197 (332)
.+.|.+||++ ++.. .+.++ . ....|+++++|++|++|+++...+.|++++++|+...+....
T Consensus 82 -----~~~v~~~d~~-g~~~-~~~~~--~-~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~g~~~~~~~~~-------- 143 (300)
T 2qc5_A 82 -----ANKIGKLSKK-GGFT-EYPLP--Q-PDSGPYGITEGLNGDIWFTQLNGDRIGKLTADGTIYEYDLPN-------- 143 (300)
T ss_dssp -----TTEEEEECTT-SCEE-EEECS--S-TTCCEEEEEECSTTCEEEEETTTTEEEEECTTSCEEEEECSS--------
T ss_pred -----CCeEEEECCC-CCeE-EecCC--C-CCCCCccceECCCCCEEEEccCCCeEEEECCCCCEEEccCCC--------
Confidence 3579999988 6664 33442 1 236799999999999999999899999999998765442111
Q ss_pred cCccccCeEEEccCceEEEEeCCCCeEEEEeCCCCCCccceeEEEEecCCCCCCCCeEEEeCCCeEEEEeCCc-eEEEEc
Q 020019 198 KNLVGLNGIVYHPDGFLIVIHTFSGNLFKIDIVDGVGEGEEIKLIRVAGGPLSFGDGLELLSPTKLVVAGNPS-ARLVES 276 (332)
Q Consensus 198 ~~~~~~nGi~~~~dG~Lyva~~~~~~i~~id~~~~~~~~~~~~~v~~~g~~~~~pdGi~~~~dG~l~va~~~~-~~~v~~ 276 (332)
....|++|+++++|.||+++..+++|+++++ ++ ....+..+ .....|.+|+++++|+||+++... ...+..
T Consensus 144 -~~~~~~~i~~d~~g~l~v~~~~~~~i~~~~~-~g-----~~~~~~~~-~~~~~~~~i~~d~~g~l~v~~~~~~~i~~~~ 215 (300)
T 2qc5_A 144 -KGSYPAFITLGSDNALWFTENQNNSIGRITN-TG-----KLEEYPLP-TNAAAPVGITSGNDGALWFVEIMGNKIGRIT 215 (300)
T ss_dssp -TTCCEEEEEECTTSSEEEEETTTTEEEEECT-TC-----CEEEEECS-STTCCEEEEEECTTSSEEEEETTTTEEEEEC
T ss_pred -CCCCceeEEECCCCCEEEEecCCCeEEEECC-CC-----cEEEeeCC-CCCCCcceEEECCCCCEEEEccCCCEEEEEc
Confidence 1246789999999999999998999999998 45 23334444 245679999999999999998543 233444
Q ss_pred CCCceEEEEEeeecCCCcccceEEEE-ECCeEEEEEec
Q 020019 277 SDGWETAAVVAKFSGPVHRLATAATV-KDGRVYLNHML 313 (332)
Q Consensus 277 ~dg~~~~~~~~~~~~~~~~~pt~va~-~~g~lyv~~~~ 313 (332)
.++ +..... .. .....|.++++ .+|+|||+...
T Consensus 216 ~~g-~~~~~~--~~-~~~~~~~~i~~d~~g~l~v~~~~ 249 (300)
T 2qc5_A 216 TTG-EISEYD--IP-TPNARPHAITAGKNSEIWFTEWG 249 (300)
T ss_dssp TTC-CEEEEE--CS-STTCCEEEEEECSTTCEEEEETT
T ss_pred CCC-cEEEEE--CC-CCCCCceEEEECCCCCEEEeccC
Confidence 566 322221 11 23567899999 68899997754
|
| >3sre_A PON1, serum paraoxonase; directed evolution, 6-blades-propeller fold, hydrolase; HET: LMT; 1.99A {Artificial gene} PDB: 1v04_A* 3srg_A* | Back alignment and structure |
|---|
Probab=99.87 E-value=3.4e-19 Score=165.47 Aligned_cols=244 Identities=16% Similarity=0.186 Sum_probs=155.6
Q ss_pred ccccceEEcCCCCEEEEE------------ecCCeEEEEECCCCCCCccceeeeEEecc-cCcCCCccceEEEeCC---C
Q 020019 45 FFRECAKWDDSGRRFIVS------------FLDGGIGQVAVPDDYPPGTVLEEVTLVKD-LELTGNGSLGLVLDHP---R 108 (332)
Q Consensus 45 ~~pegia~d~~g~~~~~~------------~~~g~I~~vd~~~~~~~~~~~~~~~~~~~-~~~~~~~~~gi~vd~~---~ 108 (332)
..||.++++++|.+|+++ ...|+|+++|+++.... .++..+... ++...-.|.||.+.++ +
T Consensus 50 ~G~EDi~~~~~G~~~~s~~~~~pg~~~~~~~~~G~I~~~d~~~~~~~---~~~l~~~g~~~~~~~f~PhGi~~~~d~dg~ 126 (355)
T 3sre_A 50 NGSEDLEILPNGLAFISSGLKYPGIMSFDPDKSGKILLMDLNEKEPA---VSELEIIGNTLDISSFNPHGISTFIDDDNT 126 (355)
T ss_dssp SCCCEEEECTTSEEEEEECCC-----------CCEEEEEETTSSSCC---EEECEEECSSCCGGGCCEEEEEEEECTTCC
T ss_pred CCcceeEEcCCCeEEEEeccccCCCcccCCCCCCeEEEEecCCCCCc---eEEEEccCCCCCcCceeeeeeEEEECCCCc
Confidence 479999999999888876 14789999998743221 111122211 1111127999998652 2
Q ss_pred CeEEEEEeCcCCCccceEEEEECCCCcEEEEEecCCCCCCCCCccceEECCCCcEEEEeC-----------------CCC
Q 020019 109 NRLLVVAADVFGNKYSAVAAYDLSTWNRLFLTQLSGPSDGKSCADDVTVDAEGNAYVTDV-----------------TGS 171 (332)
Q Consensus 109 g~l~v~~~~~~~~~~~~l~~~d~~~g~~~~~~~l~~~~~~~~~~ndiavd~dG~lyvtd~-----------------~~~ 171 (332)
.+|||++..... ..-.++.+|..++.......+.+ ....+|||++++++|++|+++. ..+
T Consensus 127 ~~L~Vvnh~~~~-s~ielf~~d~~~~~~~~~~~~~g--~~~~~pND~~v~~~G~fyvt~~~~ftd~~~~~~e~~~~~~~g 203 (355)
T 3sre_A 127 VYLLVVNHPGSS-STVEVFKFQEEEKSLLHLKTIRH--KLLPSVNDIVAVGPEHFYATNDHYFIDPYLKSWEMHLGLAWS 203 (355)
T ss_dssp EEEEEEECSTTC-CEEEEEEEETTTTEEEEEEEECC--TTCSSEEEEEEEETTEEEEEESCSCSSHHHHHHHHHTTCCCE
T ss_pred EEEEEEECCCCC-CeEEEEEEECCCCEEEEEecccc--CCCCCCceEEEeCCCCEEecCCcEeCCcccccchhhccCCcc
Confidence 479999864211 12246777776655554445543 2357899999999999999875 247
Q ss_pred eEEEEcCCCceEEEecCCCCCCcccccCccccCeEEEccCc-eEEEEeCCCCeEEEEeCCC-CCCccceeEEEEecCCCC
Q 020019 172 KIWKVGVKGEFLSIISSPLFTPKEWYKNLVGLNGIVYHPDG-FLIVIHTFSGNLFKIDIVD-GVGEGEEIKLIRVAGGPL 249 (332)
Q Consensus 172 ~I~~v~~~g~~~~~~~~~~~~~p~~~~~~~~~nGi~~~~dG-~Lyva~~~~~~i~~id~~~-~~~~~~~~~~v~~~g~~~ 249 (332)
.||+++++ +...+.. ++..||||+++||| +|||+++..++|++++.+. ++. ...+.+..+
T Consensus 204 ~vyr~d~~-~~~~~~~-----------~l~~pNGia~spDg~~lYvadt~~~~I~~~~~~~~g~l--~~~~~~~~~---- 265 (355)
T 3sre_A 204 FVTYYSPN-DVRVVAE-----------GFDFANGINISPDGKYVYIAELLAHKIHVYEKHANWTL--TPLRVLSFD---- 265 (355)
T ss_dssp EEEEECTT-CCEEEEE-----------EESSEEEEEECTTSSEEEEEEGGGTEEEEEEECTTSCE--EEEEEEECS----
T ss_pred EEEEEECC-eEEEeec-----------CCcccCcceECCCCCEEEEEeCCCCeEEEEEECCCCcE--ecCEEEeCC----
Confidence 89999985 5443322 34578999999999 9999999999999999873 322 122333332
Q ss_pred CCCCeEEEeC-CCeEEEEeC-Cc-------------eEE--EEc---CCCceEEEEEeeecCCCcccceEEEEECCeEEE
Q 020019 250 SFGDGLELLS-PTKLVVAGN-PS-------------ARL--VES---SDGWETAAVVAKFSGPVHRLATAATVKDGRVYL 309 (332)
Q Consensus 250 ~~pdGi~~~~-dG~l~va~~-~~-------------~~~--v~~---~dg~~~~~~~~~~~~~~~~~pt~va~~~g~lyv 309 (332)
..||||++|+ +|+||++.. .. ..+ +.. .++ +..++.+. .+..+..-|.+...+|+|||
T Consensus 266 g~PDGi~vD~e~G~lwva~~~~g~~v~~~~P~~~~~s~v~rI~~~~~~~~-~v~~v~~d-dG~~l~~~T~a~~~~g~L~i 343 (355)
T 3sre_A 266 TLVDNISVDPVTGDLWVGCHPNGMRIFFYDAENPPGSEVLRIQDILSEEP-KVTVVYAE-NGTVLQGSTVAAVYKGKLLI 343 (355)
T ss_dssp SEEEEEEECTTTCCEEEEEESCHHHHHSCCTTSCCCEEEEEEECTTSSSC-EEEEEEEE-CSSSCCSEEEEEEETTEEEE
T ss_pred CCCceEEEeCCCCcEEEEecCCceEEEEECCCCCCCCEEEEEEccCCCCc-EEEEEEEc-CCCEEEeeEEEEEECCEEEE
Confidence 5799999999 599999752 21 111 121 122 33333333 23334443444448999999
Q ss_pred EEecC
Q 020019 310 NHMLG 314 (332)
Q Consensus 310 ~~~~g 314 (332)
.+-+.
T Consensus 344 Gsv~~ 348 (355)
T 3sre_A 344 GTVFH 348 (355)
T ss_dssp EESSS
T ss_pred EEcCC
Confidence 87655
|
| >3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus} | Back alignment and structure |
|---|
Probab=99.86 E-value=1.2e-19 Score=168.84 Aligned_cols=216 Identities=13% Similarity=0.103 Sum_probs=153.8
Q ss_pred ccccceEEcC-CCCEEEEEecCCeEEEEECCCCCCCccceeeeEEecccCcCCCccceEEEeCCCCeEEEEEeCcCCCcc
Q 020019 45 FFRECAKWDD-SGRRFIVSFLDGGIGQVAVPDDYPPGTVLEEVTLVKDLELTGNGSLGLVLDHPRNRLLVVAADVFGNKY 123 (332)
Q Consensus 45 ~~pegia~d~-~g~~~~~~~~~g~I~~vd~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~vd~~~g~l~v~~~~~~~~~~ 123 (332)
..|+++++|+ ++++|+++...++|++++++++.. + .+.. .+. ..|.||++|+.+++||+++.. .
T Consensus 73 ~~~~~l~~d~~~~~ly~~D~~~~~I~r~~~~g~~~-----~--~~~~-~~~--~~p~glavd~~~g~ly~~d~~-----~ 137 (349)
T 3v64_C 73 ENAIALDFHHRRELVFWSDVTLDRILRANLNGSNV-----E--EVVS-TGL--ESPGGLAVDWVHDKLYWTDSG-----T 137 (349)
T ss_dssp SCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSC-----E--EEEC-SSC--SCCCEEEEETTTTEEEEEETT-----T
T ss_pred CceEEEEEeccccEEEEEeccCCceEEEecCCCCc-----e--EEEe-CCC--CCccEEEEecCCCeEEEEcCC-----C
Confidence 3789999996 466777778889999999986542 2 3332 222 378999999866999999864 4
Q ss_pred ceEEEEECCCCcEEEEEecCCCCCCCCCccceEECCC-CcEEEEeCCC-CeEEEEcCCCceEEEecCCCCCCcccccCcc
Q 020019 124 SAVAAYDLSTWNRLFLTQLSGPSDGKSCADDVTVDAE-GNAYVTDVTG-SKIWKVGVKGEFLSIISSPLFTPKEWYKNLV 201 (332)
Q Consensus 124 ~~l~~~d~~~g~~~~~~~l~~~~~~~~~~ndiavd~d-G~lyvtd~~~-~~I~~v~~~g~~~~~~~~~~~~~p~~~~~~~ 201 (332)
..|.+++++......... .....|+++++||. |.||++|+.. ++|++++++|+....+... ...
T Consensus 138 ~~I~~~~~dG~~~~~l~~-----~~l~~P~~iavdp~~g~ly~td~~~~~~I~r~~~dG~~~~~~~~~---------~~~ 203 (349)
T 3v64_C 138 SRIEVANLDGAHRKVLLW-----QSLEKPRAIALHPMEGTIYWTDWGNTPRIEASSMDGSGRRIIADT---------HLF 203 (349)
T ss_dssp TEEEEEETTSCSCEEEEC-----TTCSCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCSCEESCCS---------SCS
T ss_pred CeEEEEcCCCCceEEEEe-----CCCCCcceEEEecCcCeEEEeccCCCCEEEEEeCCCCCcEEEEEC---------CCC
Confidence 578999987543322221 22468999999985 7899999998 9999999998754433221 235
Q ss_pred ccCeEEEccCc-eEEEEeCCCCeEEEEeCCCCCCccceeEEEEecCCCCCCCCeEEEeCCCeEEEEeCCceEE--EEcCC
Q 020019 202 GLNGIVYHPDG-FLIVIHTFSGNLFKIDIVDGVGEGEEIKLIRVAGGPLSFGDGLELLSPTKLVVAGNPSARL--VESSD 278 (332)
Q Consensus 202 ~~nGi~~~~dG-~Lyva~~~~~~i~~id~~~~~~~~~~~~~v~~~g~~~~~pdGi~~~~dG~l~va~~~~~~~--v~~~d 278 (332)
.||||++++++ +|||++...++|+++++++. ..+.+.. ..+..|+||+++ ++.||+++....++ +...+
T Consensus 204 ~PnGla~d~~~~~lY~aD~~~~~I~~~~~dG~-----~~~~~~~--~~~~~P~giav~-~~~ly~td~~~~~V~~~~~~~ 275 (349)
T 3v64_C 204 WPNGLTIDYAGRRMYWVDAKHHVIERANLDGS-----HRKAVIS--QGLPHPFAITVF-EDSLYWTDWHTKSINSANKFT 275 (349)
T ss_dssp CEEEEEEETTTTEEEEEETTTTEEEEEETTSC-----SCEEEEC--SSCSSEEEEEEE-TTEEEEEETTTTEEEEEETTT
T ss_pred CcceEEEeCCCCEEEEEECCCCEEEEEeCCCC-----ceEEEEe--CCCCCceEEEEE-CCEEEEecCCCCeEEEEEccC
Confidence 68999999866 99999999999999999854 2333322 246789999995 57999998544332 33356
Q ss_pred CceEEEEEeeecCCCcccceEEEE
Q 020019 279 GWETAAVVAKFSGPVHRLATAATV 302 (332)
Q Consensus 279 g~~~~~~~~~~~~~~~~~pt~va~ 302 (332)
|.....+.. .+..|.++++
T Consensus 276 G~~~~~i~~-----~~~~p~gi~v 294 (349)
T 3v64_C 276 GKNQEIIRN-----KLHFPMDIHT 294 (349)
T ss_dssp CCSCEEEEC-----SCSCCCCEEE
T ss_pred CCccEEecc-----CCCCCceEEE
Confidence 733322221 2567888887
|
| >2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii} | Back alignment and structure |
|---|
Probab=99.86 E-value=5.5e-19 Score=158.17 Aligned_cols=227 Identities=13% Similarity=0.103 Sum_probs=165.3
Q ss_pred ccccceEEcCCCCEEEEEecCCeEEEEECCCCCCCccceeeeEEecccCcCCCccceEEEeCCCCeEEEEEeCcCCCccc
Q 020019 45 FFRECAKWDDSGRRFIVSFLDGGIGQVAVPDDYPPGTVLEEVTLVKDLELTGNGSLGLVLDHPRNRLLVVAADVFGNKYS 124 (332)
Q Consensus 45 ~~pegia~d~~g~~~~~~~~~g~I~~vd~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~vd~~~g~l~v~~~~~~~~~~~ 124 (332)
..|.+++++++|++|++....++|++++++ ++. . .+. .+. .+..|.+|+++++ |++|+++.. .+
T Consensus 62 ~~~~~i~~~~~g~l~v~~~~~~~v~~~d~~-g~~-----~--~~~-~~~-~~~~~~~i~~~~~-g~l~v~~~~-----~~ 125 (300)
T 2qc5_A 62 AKVMCLIVSSLGDIWFTENGANKIGKLSKK-GGF-----T--EYP-LPQ-PDSGPYGITEGLN-GDIWFTQLN-----GD 125 (300)
T ss_dssp CCEEEEEECTTSCEEEEETTTTEEEEECTT-SCE-----E--EEE-CSS-TTCCEEEEEECST-TCEEEEETT-----TT
T ss_pred CcceeEEECCCCCEEEEecCCCeEEEECCC-CCe-----E--Eec-CCC-CCCCCccceECCC-CCEEEEccC-----CC
Confidence 478999999999999988767899999987 542 1 222 221 1247899999986 999999753 35
Q ss_pred eEEEEECCCCcEEEEEecCCCCCCCCCccceEECCCCcEEEEeCCCCeEEEEcCCCceEEEecCCCCCCcccccCccccC
Q 020019 125 AVAAYDLSTWNRLFLTQLSGPSDGKSCADDVTVDAEGNAYVTDVTGSKIWKVGVKGEFLSIISSPLFTPKEWYKNLVGLN 204 (332)
Q Consensus 125 ~l~~~d~~~g~~~~~~~l~~~~~~~~~~ndiavd~dG~lyvtd~~~~~I~~v~~~g~~~~~~~~~~~~~p~~~~~~~~~n 204 (332)
.|.+||++ ++... ..++ . ....|+++++|++|++|+++...+.|++++++|+...+.... ....+.
T Consensus 126 ~i~~~~~~-g~~~~-~~~~--~-~~~~~~~i~~d~~g~l~v~~~~~~~i~~~~~~g~~~~~~~~~---------~~~~~~ 191 (300)
T 2qc5_A 126 RIGKLTAD-GTIYE-YDLP--N-KGSYPAFITLGSDNALWFTENQNNSIGRITNTGKLEEYPLPT---------NAAAPV 191 (300)
T ss_dssp EEEEECTT-SCEEE-EECS--S-TTCCEEEEEECTTSSEEEEETTTTEEEEECTTCCEEEEECSS---------TTCCEE
T ss_pred eEEEECCC-CCEEE-ccCC--C-CCCCceeEEECCCCCEEEEecCCCeEEEECCCCcEEEeeCCC---------CCCCcc
Confidence 78999987 76653 3342 1 246899999999999999999999999999988766532111 234678
Q ss_pred eEEEccCceEEEEeCCCCeEEEEeCCCCCCccceeEEEEecCCCCCCCCeEEEeCCCeEEEEeCC-ceEEEEcCCCceEE
Q 020019 205 GIVYHPDGFLIVIHTFSGNLFKIDIVDGVGEGEEIKLIRVAGGPLSFGDGLELLSPTKLVVAGNP-SARLVESSDGWETA 283 (332)
Q Consensus 205 Gi~~~~dG~Lyva~~~~~~i~~id~~~~~~~~~~~~~v~~~g~~~~~pdGi~~~~dG~l~va~~~-~~~~v~~~dg~~~~ 283 (332)
+|+++++|.||+++..+++|++++++ + ....+..+ .....|.+|+++++|+||+++.. ....++.+++ +..
T Consensus 192 ~i~~d~~g~l~v~~~~~~~i~~~~~~-g-----~~~~~~~~-~~~~~~~~i~~d~~g~l~v~~~~~~~i~~~~~~g-~~~ 263 (300)
T 2qc5_A 192 GITSGNDGALWFVEIMGNKIGRITTT-G-----EISEYDIP-TPNARPHAITAGKNSEIWFTEWGANQIGRITNDN-TIQ 263 (300)
T ss_dssp EEEECTTSSEEEEETTTTEEEEECTT-C-----CEEEEECS-STTCCEEEEEECSTTCEEEEETTTTEEEEECTTS-CEE
T ss_pred eEEECCCCCEEEEccCCCEEEEEcCC-C-----cEEEEECC-CCCCCceEEEECCCCCEEEeccCCCeEEEECCCC-cEE
Confidence 99999999999999999999999983 4 23334443 24567999999999999999843 2233445566 322
Q ss_pred EEEeeecCCCcccceEEEE-ECCeEEEEEe
Q 020019 284 AVVAKFSGPVHRLATAATV-KDGRVYLNHM 312 (332)
Q Consensus 284 ~~~~~~~~~~~~~pt~va~-~~g~lyv~~~ 312 (332)
... +. .....|.++++ .+|+||++..
T Consensus 264 ~~~--~~-~~~~~~~~i~~~~~g~l~v~~~ 290 (300)
T 2qc5_A 264 EYQ--LQ-TENAEPHGITFGKDGSVWFALK 290 (300)
T ss_dssp EEE--CC-STTCCCCCEEECTTSCEEEECS
T ss_pred EEE--CC-ccCCccceeEeCCCCCEEEEcc
Confidence 221 11 13466899999 6899999765
|
| >2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A* | Back alignment and structure |
|---|
Probab=99.86 E-value=7.3e-19 Score=157.30 Aligned_cols=235 Identities=12% Similarity=0.056 Sum_probs=167.5
Q ss_pred EEecCCccccceEEcCCCCEEEEEecCCeEEEEECCCCCCCccceeeeEEecccCcCCCccceEEEeCCCCeEEEEEeCc
Q 020019 39 HYHSSSFFRECAKWDDSGRRFIVSFLDGGIGQVAVPDDYPPGTVLEEVTLVKDLELTGNGSLGLVLDHPRNRLLVVAADV 118 (332)
Q Consensus 39 ~~~~~~~~pegia~d~~g~~~~~~~~~g~I~~vd~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~vd~~~g~l~v~~~~~ 118 (332)
.+......|.+++++++|++|+++...+.|+++++. ++. . .+. .+. ....|.+|+++++ |++|+++..
T Consensus 9 ~~~~~~~~~~~i~~d~~g~l~v~~~~~~~v~~~d~~-~~~-----~--~~~-~~~-~~~~~~~i~~~~~-g~l~v~~~~- 76 (299)
T 2z2n_A 9 NLTNQDTGPYGITVSDKGKVWITQHKANMISCINLD-GKI-----T--EYP-LPT-PDAKVMCLTISSD-GEVWFTENA- 76 (299)
T ss_dssp ECCSSSCCEEEEEECTTSCEEEEETTTTEEEEECTT-CCE-----E--EEE-CSS-TTCCEEEEEECTT-SCEEEEETT-
T ss_pred cCCCcCCCccceEECCCCCEEEEecCCCcEEEEcCC-CCe-----E--Eec-CCc-ccCceeeEEECCC-CCEEEeCCC-
Confidence 344445689999999999999988767899999987 542 1 222 121 1247899999996 999999753
Q ss_pred CCCccceEEEEECCCCcEEEEEecCCCCCCCCCccceEECCCCcEEEEeCCCCeEEEEcCCCceEEEecCCCCCCccccc
Q 020019 119 FGNKYSAVAAYDLSTWNRLFLTQLSGPSDGKSCADDVTVDAEGNAYVTDVTGSKIWKVGVKGEFLSIISSPLFTPKEWYK 198 (332)
Q Consensus 119 ~~~~~~~l~~~d~~~g~~~~~~~l~~~~~~~~~~ndiavd~dG~lyvtd~~~~~I~~v~~~g~~~~~~~~~~~~~p~~~~ 198 (332)
.+.|.+||++ ++... +.++ . ....|+++++|++|++|+++...+.|++++++|+...+....
T Consensus 77 ----~~~i~~~~~~-g~~~~-~~~~--~-~~~~~~~i~~~~~g~l~v~~~~~~~i~~~d~~g~~~~~~~~~--------- 138 (299)
T 2z2n_A 77 ----ANKIGRITKK-GIIKE-YTLP--N-PDSAPYGITEGPNGDIWFTEMNGNRIGRITDDGKIREYELPN--------- 138 (299)
T ss_dssp ----TTEEEEECTT-SCEEE-EECS--S-TTCCEEEEEECTTSCEEEEETTTTEEEEECTTCCEEEEECSS---------
T ss_pred ----CCeEEEECCC-CcEEE-EeCC--C-cCCCceeeEECCCCCEEEEecCCceEEEECCCCCEEEecCCC---------
Confidence 3578999986 55432 3342 1 246799999999999999999899999999987765442111
Q ss_pred CccccCeEEEccCceEEEEeCCCCeEEEEeCCCCCCccceeEEEEecCCCCCCCCeEEEeCCCeEEEEeCCc-eEEEEcC
Q 020019 199 NLVGLNGIVYHPDGFLIVIHTFSGNLFKIDIVDGVGEGEEIKLIRVAGGPLSFGDGLELLSPTKLVVAGNPS-ARLVESS 277 (332)
Q Consensus 199 ~~~~~nGi~~~~dG~Lyva~~~~~~i~~id~~~~~~~~~~~~~v~~~g~~~~~pdGi~~~~dG~l~va~~~~-~~~v~~~ 277 (332)
....+++|+++++|+||+++..++.|+++++ ++ ....+..+ .....|.+|+++++|+||+++... ...+...
T Consensus 139 ~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~-~g-----~~~~~~~~-~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~ 211 (299)
T 2z2n_A 139 KGSYPSFITLGSDNALWFTENQNNAIGRITE-SG-----DITEFKIP-TPASGPVGITKGNDDALWFVEIIGNKIGRITT 211 (299)
T ss_dssp TTCCEEEEEECTTSCEEEEETTTTEEEEECT-TC-----CEEEEECS-STTCCEEEEEECTTSSEEEEETTTTEEEEECT
T ss_pred CCCCCceEEEcCCCCEEEEeCCCCEEEEEcC-CC-----cEEEeeCC-CCCCcceeEEECCCCCEEEEccCCceEEEECC
Confidence 1245789999999999999998899999998 55 33334443 234678999999999999998432 2223444
Q ss_pred CCceEEEEEeeecCCCcccceEEEE-ECCeEEEEEecC
Q 020019 278 DGWETAAVVAKFSGPVHRLATAATV-KDGRVYLNHMLG 314 (332)
Q Consensus 278 dg~~~~~~~~~~~~~~~~~pt~va~-~~g~lyv~~~~g 314 (332)
++ +...+ ... .....|.++++ .+|+|||+....
T Consensus 212 ~g-~~~~~--~~~-~~~~~~~~i~~~~~g~l~v~~~~~ 245 (299)
T 2z2n_A 212 SG-EITEF--KIP-TPNARPHAITAGAGIDLWFTEWGA 245 (299)
T ss_dssp TC-CEEEE--ECS-STTCCEEEEEECSTTCEEEEETTT
T ss_pred CC-cEEEE--ECC-CCCCCceeEEECCCCCEEEeccCC
Confidence 66 32222 111 23567899999 688999976443
|
| >2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1 | Back alignment and structure |
|---|
Probab=99.86 E-value=1.7e-19 Score=165.92 Aligned_cols=247 Identities=15% Similarity=0.164 Sum_probs=167.4
Q ss_pred CccccceEEcCC-CCEEEEEecCCeEEEEECCCCCCCccceeeeEEecccCcCCCccceEEEeCCCCeEEEEEeCcCCCc
Q 020019 44 SFFRECAKWDDS-GRRFIVSFLDGGIGQVAVPDDYPPGTVLEEVTLVKDLELTGNGSLGLVLDHPRNRLLVVAADVFGNK 122 (332)
Q Consensus 44 ~~~pegia~d~~-g~~~~~~~~~g~I~~vd~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~vd~~~g~l~v~~~~~~~~~ 122 (332)
...+|+++|+++ +.+|+++...++|+++++.+++. . .+. .+ ..+.+++++++ |++|++..
T Consensus 48 ~~~~egp~~~~~~~~l~~~d~~~~~i~~~d~~~~~~-----~--~~~-~~----~~v~~i~~~~d-g~l~v~~~------ 108 (326)
T 2ghs_A 48 MLLGEGPTFDPASGTAWWFNILERELHELHLASGRK-----T--VHA-LP----FMGSALAKISD-SKQLIASD------ 108 (326)
T ss_dssp CSBEEEEEEETTTTEEEEEEGGGTEEEEEETTTTEE-----E--EEE-CS----SCEEEEEEEET-TEEEEEET------
T ss_pred CCCCcCCeEeCCCCEEEEEECCCCEEEEEECCCCcE-----E--EEE-CC----CcceEEEEeCC-CeEEEEEC------
Confidence 348999999997 55777777789999999986641 1 222 22 26788999996 99999863
Q ss_pred cceEEEEECCCCcEEEEEecCCCCCCCCCccceEECCCCcEEEEeCC------CCeEEEEcCCCceEEEecCCCCCCccc
Q 020019 123 YSAVAAYDLSTWNRLFLTQLSGPSDGKSCADDVTVDAEGNAYVTDVT------GSKIWKVGVKGEFLSIISSPLFTPKEW 196 (332)
Q Consensus 123 ~~~l~~~d~~~g~~~~~~~l~~~~~~~~~~ndiavd~dG~lyvtd~~------~~~I~~v~~~g~~~~~~~~~~~~~p~~ 196 (332)
..|++||+++++......... ......++++++|++|++|+++.. .+.||+++ +|+...+..
T Consensus 109 -~gl~~~d~~~g~~~~~~~~~~-~~~~~~~~~i~~d~~G~l~v~~~~~~~~~~~~~l~~~~-~g~~~~~~~--------- 176 (326)
T 2ghs_A 109 -DGLFLRDTATGVLTLHAELES-DLPGNRSNDGRMHPSGALWIGTMGRKAETGAGSIYHVA-KGKVTKLFA--------- 176 (326)
T ss_dssp -TEEEEEETTTCCEEEEECSST-TCTTEEEEEEEECTTSCEEEEEEETTCCTTCEEEEEEE-TTEEEEEEE---------
T ss_pred -CCEEEEECCCCcEEEEeeCCC-CCCCCCCCCEEECCCCCEEEEeCCCcCCCCceEEEEEe-CCcEEEeeC---------
Confidence 258999999888765443321 111357899999999999998753 47899999 777554321
Q ss_pred ccCccccCeEEEccCc-eEEEEeCCCCeEEEEeCC--CC-CCccceeEEEEecCCCCCCCCeEEEeCCCeEEEEeCC-ce
Q 020019 197 YKNLVGLNGIVYHPDG-FLIVIHTFSGNLFKIDIV--DG-VGEGEEIKLIRVAGGPLSFGDGLELLSPTKLVVAGNP-SA 271 (332)
Q Consensus 197 ~~~~~~~nGi~~~~dG-~Lyva~~~~~~i~~id~~--~~-~~~~~~~~~v~~~g~~~~~pdGi~~~~dG~l~va~~~-~~ 271 (332)
....++++++++|| .||+++...++|++++.+ ++ .... ........ .....|+|+++|++|+||++... ..
T Consensus 177 --~~~~~~~i~~s~dg~~lyv~~~~~~~I~~~d~~~~~Gl~~~~-~~~~~~~~-~~~~~p~gi~~d~~G~lwva~~~~~~ 252 (326)
T 2ghs_A 177 --DISIPNSICFSPDGTTGYFVDTKVNRLMRVPLDARTGLPTGK-AEVFIDST-GIKGGMDGSVCDAEGHIWNARWGEGA 252 (326)
T ss_dssp --EESSEEEEEECTTSCEEEEEETTTCEEEEEEBCTTTCCBSSC-CEEEEECT-TSSSEEEEEEECTTSCEEEEEETTTE
T ss_pred --CCcccCCeEEcCCCCEEEEEECCCCEEEEEEcccccCCcccC-ceEEEECC-CCCCCCCeeEECCCCCEEEEEeCCCE
Confidence 12357899999999 899999999999999986 44 3211 11112222 12357999999999999999843 22
Q ss_pred EEEEcCCCceEEEEEeeecCCCcccceEEEEE---CCeEEEEEecC-cccc-CCccceeeeeec
Q 020019 272 RLVESSDGWETAAVVAKFSGPVHRLATAATVK---DGRVYLNHMLG-FGYP-KKKHALVEAVFS 330 (332)
Q Consensus 272 ~~v~~~dg~~~~~~~~~~~~~~~~~pt~va~~---~g~lyv~~~~g-~~~~-~~~~~~~~~~~~ 330 (332)
..+..++| + +...+..+ ...|+++++. +++|||+...+ .... ..+.|.++++|.
T Consensus 253 v~~~d~~g-~---~~~~i~~~-~~~~~~~af~g~d~~~L~vt~~~~~~~~~~~~~~p~~g~~~~ 311 (326)
T 2ghs_A 253 VDRYDTDG-N---HIARYEVP-GKQTTCPAFIGPDASRLLVTSAREHLDDDAITANPQHGLTFE 311 (326)
T ss_dssp EEEECTTC-C---EEEEEECS-CSBEEEEEEESTTSCEEEEEEBCTTCCHHHHHHCTTTTCEEE
T ss_pred EEEECCCC-C---EEEEEECC-CCCcEEEEEecCCCCEEEEEecCCCCChhHhccCCCCceEEE
Confidence 33455666 2 33333333 3468999984 36899965443 3222 234566777764
|
| >3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus} | Back alignment and structure |
|---|
Probab=99.86 E-value=1.5e-19 Score=170.50 Aligned_cols=216 Identities=13% Similarity=0.104 Sum_probs=153.5
Q ss_pred ccccceEEcC-CCCEEEEEecCCeEEEEECCCCCCCccceeeeEEecccCcCCCccceEEEeCCCCeEEEEEeCcCCCcc
Q 020019 45 FFRECAKWDD-SGRRFIVSFLDGGIGQVAVPDDYPPGTVLEEVTLVKDLELTGNGSLGLVLDHPRNRLLVVAADVFGNKY 123 (332)
Q Consensus 45 ~~pegia~d~-~g~~~~~~~~~g~I~~vd~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~vd~~~g~l~v~~~~~~~~~~ 123 (332)
..|++++||+ ++++|+++...++|++++++++.. + .+.. .+. ..|.||++|+.+++||+++.. .
T Consensus 116 ~~~~gl~~d~~~~~ly~~D~~~~~I~r~~~~g~~~-----~--~~~~-~~~--~~p~glavd~~~g~lY~~d~~-----~ 180 (386)
T 3v65_B 116 ENAIALDFHHRRELVFWSDVTLDRILRANLNGSNV-----E--EVVS-TGL--ESPGGLAVDWVHDKLYWTDSG-----T 180 (386)
T ss_dssp SCEEEEEEETTTTEEEEEETTTTEEEEEETTSCCE-----E--EEEC-SSC--SCCCCEEEETTTTEEEEEETT-----T
T ss_pred CccEEEEEecCCCeEEEEeCCCCcEEEEecCCCCc-----E--EEEe-CCC--CCccEEEEEeCCCeEEEEcCC-----C
Confidence 3799999996 466777778889999999886541 2 3332 222 378999999866999999874 4
Q ss_pred ceEEEEECCCCcEEEEEecCCCCCCCCCccceEECCC-CcEEEEeCCC-CeEEEEcCCCceEEEecCCCCCCcccccCcc
Q 020019 124 SAVAAYDLSTWNRLFLTQLSGPSDGKSCADDVTVDAE-GNAYVTDVTG-SKIWKVGVKGEFLSIISSPLFTPKEWYKNLV 201 (332)
Q Consensus 124 ~~l~~~d~~~g~~~~~~~l~~~~~~~~~~ndiavd~d-G~lyvtd~~~-~~I~~v~~~g~~~~~~~~~~~~~p~~~~~~~ 201 (332)
..|.+++++......... .+...|+++++||+ |.||++|+.. ++|++++++|+....+... .+.
T Consensus 181 ~~I~~~~~dg~~~~~l~~-----~~l~~P~giavdp~~g~ly~td~~~~~~I~r~~~dG~~~~~~~~~---------~~~ 246 (386)
T 3v65_B 181 SRIEVANLDGAHRKVLLW-----QSLEKPRAIALHPMEGTIYWTDWGNTPRIEASSMDGSGRRIIADT---------HLF 246 (386)
T ss_dssp TEEEECBTTSCSCEEEEC-----SSCSCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCSCEEEECS---------SCS
T ss_pred CeEEEEeCCCCceEEeec-----CCCCCCcEEEEEcCCCeEEEeccCCCCEEEEEeCCCCCcEEEEEC---------CCC
Confidence 578888887543332221 22468999999985 6899999998 9999999998754433222 234
Q ss_pred ccCeEEEccCc-eEEEEeCCCCeEEEEeCCCCCCccceeEEEEecCCCCCCCCeEEEeCCCeEEEEeCCceEE--EEcCC
Q 020019 202 GLNGIVYHPDG-FLIVIHTFSGNLFKIDIVDGVGEGEEIKLIRVAGGPLSFGDGLELLSPTKLVVAGNPSARL--VESSD 278 (332)
Q Consensus 202 ~~nGi~~~~dG-~Lyva~~~~~~i~~id~~~~~~~~~~~~~v~~~g~~~~~pdGi~~~~dG~l~va~~~~~~~--v~~~d 278 (332)
.||||++++++ +|||++..+++|+++++++. ..+.+.. ..+..|+||+++ ++.||+++....++ +...+
T Consensus 247 ~PnGlavd~~~~~lY~aD~~~~~I~~~d~dG~-----~~~~~~~--~~~~~P~giav~-~~~ly~td~~~~~V~~~~~~~ 318 (386)
T 3v65_B 247 WPNGLTIDYAGRRMYWVDAKHHVIERANLDGS-----HRKAVIS--QGLPHPFAITVF-EDSLYWTDWHTKSINSANKFT 318 (386)
T ss_dssp CEEEEEEEGGGTEEEEEETTTTEEEEECTTSC-----SCEEEEC--SSCSSEEEEEEE-TTEEEEEETTTTEEEEEETTT
T ss_pred CeeeEEEeCCCCEEEEEECCCCEEEEEeCCCC-----eeEEEEE--CCCCCceEEEEE-CCEEEEeeCCCCeEEEEECCC
Confidence 68999999776 99999999999999998854 2333322 246789999995 57899998544332 33366
Q ss_pred CceEEEEEeeecCCCcccceEEEE
Q 020019 279 GWETAAVVAKFSGPVHRLATAATV 302 (332)
Q Consensus 279 g~~~~~~~~~~~~~~~~~pt~va~ 302 (332)
|.....+. . .+..|.++++
T Consensus 319 G~~~~~i~----~-~~~~p~gi~v 337 (386)
T 3v65_B 319 GKNQEIIR----N-KLHFPMDIHT 337 (386)
T ss_dssp CCSCEEEE----C-SCSCCCCEEE
T ss_pred CcceEEEc----c-CCCCCceEEE
Confidence 73322222 2 2567888887
|
| >4hw6_A Hypothetical protein, IPT/TIG domain protein; putative carbohydrate bindning two domains protein, IPT/TIG (PF01833), 6-beta-propeller; HET: MSE; 1.70A {Bacteroides ovatus} | Back alignment and structure |
|---|
Probab=99.85 E-value=7e-19 Score=168.38 Aligned_cols=239 Identities=12% Similarity=0.074 Sum_probs=161.0
Q ss_pred cccceEEcCC---CCEEEEEecCCeEEEEECCCCCCCccceeeeEEecccCcCCCccceEEEeCCCCeEEEEEeCcCCCc
Q 020019 46 FRECAKWDDS---GRRFIVSFLDGGIGQVAVPDDYPPGTVLEEVTLVKDLELTGNGSLGLVLDHPRNRLLVVAADVFGNK 122 (332)
Q Consensus 46 ~pegia~d~~---g~~~~~~~~~g~I~~vd~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~vd~~~g~l~v~~~~~~~~~ 122 (332)
.|+++++|++ |++|+++.. ++|+++++.+++. . ++.. . ...|.+|+++++ |+|||++..... .
T Consensus 140 ~P~gvavd~~s~~g~Lyv~D~~-~~I~~id~~~g~v-----~--~~~~--~--~~~P~giavd~d-G~lyVad~~~~~-~ 205 (433)
T 4hw6_A 140 NIWRMMFDPNSNYDDLYWVGQR-DAFRHVDFVNQYV-----D--IKTT--N--IGQCADVNFTLN-GDMVVVDDQSSD-T 205 (433)
T ss_dssp CCCEEEECTTTTTCEEEEECBT-SCEEEEETTTTEE-----E--EECC--C--CSCEEEEEECTT-CCEEEEECCSCT-T
T ss_pred CCceEEEccccCCCEEEEEeCC-CCEEEEECCCCEE-----E--Eeec--C--CCCccEEEECCC-CCEEEEcCCCCc-c
Confidence 7999999984 888888865 9999999976652 1 3332 2 237999999997 779999863211 1
Q ss_pred cceEEEEECCCCcEEEEEecCCCCCCCCCccceEECC-CCcEEEEeCCCCeEEEEcCC-Cce-EEEecCCCCCCcccccC
Q 020019 123 YSAVAAYDLSTWNRLFLTQLSGPSDGKSCADDVTVDA-EGNAYVTDVTGSKIWKVGVK-GEF-LSIISSPLFTPKEWYKN 199 (332)
Q Consensus 123 ~~~l~~~d~~~g~~~~~~~l~~~~~~~~~~ndiavd~-dG~lyvtd~~~~~I~~v~~~-g~~-~~~~~~~~~~~p~~~~~ 199 (332)
...++.++...+... ...+. ....|+++++|+ +|+|||+|..+++|++++++ |+. ..+.....
T Consensus 206 ~~gv~~~~~~~~~~~-~~~~~----~~~~P~giavd~~~G~lyv~d~~~~~V~~~d~~~g~~~~~~~~~~~--------- 271 (433)
T 4hw6_A 206 NTGIYLFTRASGFTE-RLSLC----NARGAKTCAVHPQNGKIYYTRYHHAMISSYDPATGTLTEEEVMMDT--------- 271 (433)
T ss_dssp SEEEEEECGGGTTCC-EEEEE----ECSSBCCCEECTTTCCEEECBTTCSEEEEECTTTCCEEEEEEECSC---------
T ss_pred cceEEEEECCCCeec-ccccc----ccCCCCEEEEeCCCCeEEEEECCCCEEEEEECCCCeEEEEEeccCC---------
Confidence 123555665432211 11121 136799999999 79999999999999999998 665 33322211
Q ss_pred ccccCeEEEccCc-eEEEEeCCCCeEEEEeCCC--CCCccceeEEEEec-C-----------CCCCCCCeEEE-------
Q 020019 200 LVGLNGIVYHPDG-FLIVIHTFSGNLFKIDIVD--GVGEGEEIKLIRVA-G-----------GPLSFGDGLEL------- 257 (332)
Q Consensus 200 ~~~~nGi~~~~dG-~Lyva~~~~~~i~~id~~~--~~~~~~~~~~v~~~-g-----------~~~~~pdGi~~------- 257 (332)
...+.+|+++++| +|||++..+++|++++++. +... ....+... + ..+..|.||++
T Consensus 272 ~~~~~~ia~dpdG~~LYvad~~~~~I~~~~~d~~~~~~~--~~~~~ag~~g~~g~~dg~~~~a~~~~P~giav~~n~~y~ 349 (433)
T 4hw6_A 272 KGSNFHIVWHPTGDWAYIIYNGKHCIYRVDYNRETGKLA--VPYIVCGQHSSPGWVDGMGTGARLWGPNQGIFVKNEAYA 349 (433)
T ss_dssp CSSCEEEEECTTSSEEEEEETTTTEEEEEEBCTTTCCBC--CCEEEEECTTCCCCBCEEGGGSBCSSEEEEEEEECGGGT
T ss_pred CCCcccEEEeCCCCEEEEEeCCCCEEEEEeCCCCCcccC--cEEEEEecCCCCccCCCcccceEEcCCccEEEEcccccc
Confidence 1234589999999 7999999999999998763 3110 11122110 1 23567999999
Q ss_pred --eCCCeEEEEeCCce-EEEEcCCCceEEEEEeeec-------------CCCcccceEEEEE--CCeEEEEEecCc
Q 020019 258 --LSPTKLVVAGNPSA-RLVESSDGWETAAVVAKFS-------------GPVHRLATAATVK--DGRVYLNHMLGF 315 (332)
Q Consensus 258 --~~dG~l~va~~~~~-~~v~~~dg~~~~~~~~~~~-------------~~~~~~pt~va~~--~g~lyv~~~~g~ 315 (332)
+++|+|||++.... ..++.++| ...++..... ..++..|.++++. +|+|||+.....
T Consensus 350 ~dd~~g~lyvaD~~n~~I~~~~~~G-~v~t~~G~g~~~~~G~~dG~~~~~~~~~~P~giavd~~~g~lyVaD~~n~ 424 (433)
T 4hw6_A 350 GEEDEYDFYFCDRDSHTVRVLTPEG-RVTTYAGRGNSREWGYVDGELRSQALFNHPTSIAYDMKRKCFYIGDCDNH 424 (433)
T ss_dssp TSSCCEEEEEEETTTTEEEEECTTS-EEEEEECCCTTCSSCCBCEETTTTCBCSSEEEEEEETTTTEEEEEEGGGT
T ss_pred ccCCCCcEEEEECCCCEEEEECCCC-CEEEEEeCCCCCccccCCCccccccEeCCCcEEEEECCCCEEEEEeCCCC
Confidence 89999999984332 22456788 5545543211 1147889999996 899999876443
|
| >3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482} | Back alignment and structure |
|---|
Probab=99.85 E-value=9e-19 Score=166.41 Aligned_cols=239 Identities=12% Similarity=0.071 Sum_probs=163.0
Q ss_pred cccceEEcCCCCEEEEEecCCeEEEEECCCCCCCccceeeeEEecccCcCCCccceEEEeCCCCeEEEEEeCcCCCccce
Q 020019 46 FRECAKWDDSGRRFIVSFLDGGIGQVAVPDDYPPGTVLEEVTLVKDLELTGNGSLGLVLDHPRNRLLVVAADVFGNKYSA 125 (332)
Q Consensus 46 ~pegia~d~~g~~~~~~~~~g~I~~vd~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~vd~~~g~l~v~~~~~~~~~~~~ 125 (332)
.|.+++++++|++|+++..+++|++++++++.. . ++... +..+. ++++++.+.||+++.+. ...
T Consensus 132 ~P~~la~d~~g~lyv~d~~~~~I~~id~~~g~~-----~--~~~~~----~~~~~-ia~~~~g~~l~~~d~~~----~~~ 195 (409)
T 3hrp_A 132 YMWGIAAVGNNTVLAYQRDDPRVRLISVDDNKV-----T--TVHPG----FKGGK-PAVTKDKQRVYSIGWEG----THT 195 (409)
T ss_dssp CEEEEEECSTTEEEEEETTTTEEEEEETTTTEE-----E--EEEET----CCBCB-CEECTTSSEEEEEBSST----TCE
T ss_pred CceEEEEeCCCCEEEEecCCCcEEEEECCCCEE-----E--Eeecc----CCCCc-eeEecCCCcEEEEecCC----Cce
Confidence 899999999999999888789999999986652 1 33321 12456 99999866788887531 127
Q ss_pred EEEEECCCCcEEEEE-ecCCCCCCCCCccceEECC-CCcEEEEeCCCCeEEEEcCCCceEEEe-cCCCCCCcccccCccc
Q 020019 126 VAAYDLSTWNRLFLT-QLSGPSDGKSCADDVTVDA-EGNAYVTDVTGSKIWKVGVKGEFLSII-SSPLFTPKEWYKNLVG 202 (332)
Q Consensus 126 l~~~d~~~g~~~~~~-~l~~~~~~~~~~ndiavd~-dG~lyvtd~~~~~I~~v~~~g~~~~~~-~~~~~~~p~~~~~~~~ 202 (332)
|++||..++...... .+. ......|+++++++ +|+||+++. .+.|+++++++.....+ ..... .. ....
T Consensus 196 I~~~d~~~~~~~~~~g~~~--~~~~~~p~~iav~p~~g~lyv~d~-~~~I~~~d~~~~~~~~~~~~~~~-g~----~~~~ 267 (409)
T 3hrp_A 196 VYVYMKASGWAPTRIGQLG--STFSGKIGAVALDETEEWLYFVDS-NKNFGRFNVKTQEVTLIKQLELS-GS----LGTN 267 (409)
T ss_dssp EEEEEGGGTTCEEEEEECC--TTSCSCCCBCEECTTSSEEEEECT-TCEEEEEETTTCCEEEEEECCCC-SC----CCCS
T ss_pred EEEEEcCCCceeEEeeecc--chhcCCcEEEEEeCCCCeEEEEEC-CCcEEEEECCCCCEEEEeccccc-CC----CCCC
Confidence 999998766543222 221 11246899999999 689999876 78999999985533332 11111 00 1122
Q ss_pred cC-eEEEccC-ceEEEEeCCCCeEEEEeCCCCCCccceeEEEEecC------------CCCCCCCeEEEeCCCeEEEEeC
Q 020019 203 LN-GIVYHPD-GFLIVIHTFSGNLFKIDIVDGVGEGEEIKLIRVAG------------GPLSFGDGLELLSPTKLVVAGN 268 (332)
Q Consensus 203 ~n-Gi~~~~d-G~Lyva~~~~~~i~~id~~~~~~~~~~~~~v~~~g------------~~~~~pdGi~~~~dG~l~va~~ 268 (332)
|. +|+++|+ |+||+++..+++|++++++.. +..+.-.+ ..+..|.||+++++|+||+++.
T Consensus 268 P~~~ia~~p~~g~lyv~d~~~~~I~~~~~~g~------~~~~~g~~~~~g~~dg~~~~~~~~~P~gia~d~dG~lyvad~ 341 (409)
T 3hrp_A 268 PGPYLIYYFVDSNFYMSDQNLSSVYKITPDGE------CEWFCGSATQKTVQDGLREEALFAQPNGMTVDEDGNFYIVDG 341 (409)
T ss_dssp SCCEEEEETTTTEEEEEETTTTEEEEECTTCC------EEEEEECTTCCSCBCEEGGGCBCSSEEEEEECTTCCEEEEET
T ss_pred ccccEEEeCCCCEEEEEeCCCCEEEEEecCCC------EEEEEeCCCCCCcCCCcccccEeCCCeEEEEeCCCCEEEEeC
Confidence 44 9999995 699999999999999998743 22222110 1256799999999999999986
Q ss_pred -CceE--EEEcCCCceEEEEEeeec----------CCCcccceEEEE-ECCeEEEEEecCc
Q 020019 269 -PSAR--LVESSDGWETAAVVAKFS----------GPVHRLATAATV-KDGRVYLNHMLGF 315 (332)
Q Consensus 269 -~~~~--~v~~~dg~~~~~~~~~~~----------~~~~~~pt~va~-~~g~lyv~~~~g~ 315 (332)
...+ .+..++| ...++..... ...+..|.++++ .+++|||+.....
T Consensus 342 ~~~~~I~~~~~~~G-~v~~~~g~~~~~g~~~g~~~~~~~~~P~giavd~~g~lyVad~~n~ 401 (409)
T 3hrp_A 342 FKGYCLRKLDILDG-YVSTVAGQVDVASQIDGTPLEATFNYPYDICYDGEGGYWIAEAWGK 401 (409)
T ss_dssp TTTCEEEEEETTTT-EEEEEEECTTCBSCCCBSTTTCCBSSEEEEEECSSSEEEEEESTTC
T ss_pred CCCCEEEEEECCCC-EEEEEeCCCCCCCcCCCChhceEeCCceEEEEcCCCCEEEEECCCC
Confidence 5433 2333677 4444443210 013788999999 6799999876554
|
| >2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A* | Back alignment and structure |
|---|
Probab=99.85 E-value=2e-18 Score=154.44 Aligned_cols=228 Identities=10% Similarity=0.079 Sum_probs=163.8
Q ss_pred CccccceEEcCCCCEEEEEecCCeEEEEECCCCCCCccceeeeEEecccCcCCCccceEEEeCCCCeEEEEEeCcCCCcc
Q 020019 44 SFFRECAKWDDSGRRFIVSFLDGGIGQVAVPDDYPPGTVLEEVTLVKDLELTGNGSLGLVLDHPRNRLLVVAADVFGNKY 123 (332)
Q Consensus 44 ~~~pegia~d~~g~~~~~~~~~g~I~~vd~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~vd~~~g~l~v~~~~~~~~~~ 123 (332)
...|.+++++++|++|++....+.|++++++ ++. + .+. .+. ....|.+|+++++ |++|+++.. .
T Consensus 56 ~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~-g~~-----~--~~~-~~~-~~~~~~~i~~~~~-g~l~v~~~~-----~ 119 (299)
T 2z2n_A 56 DAKVMCLTISSDGEVWFTENAANKIGRITKK-GII-----K--EYT-LPN-PDSAPYGITEGPN-GDIWFTEMN-----G 119 (299)
T ss_dssp TCCEEEEEECTTSCEEEEETTTTEEEEECTT-SCE-----E--EEE-CSS-TTCCEEEEEECTT-SCEEEEETT-----T
T ss_pred cCceeeEEECCCCCEEEeCCCCCeEEEECCC-CcE-----E--EEe-CCC-cCCCceeeEECCC-CCEEEEecC-----C
Confidence 4578999999999999988767899999986 431 1 222 221 2247899999996 999999753 3
Q ss_pred ceEEEEECCCCcEEEEEecCCCCCCCCCccceEECCCCcEEEEeCCCCeEEEEcCCCceEEEecCCCCCCcccccCcccc
Q 020019 124 SAVAAYDLSTWNRLFLTQLSGPSDGKSCADDVTVDAEGNAYVTDVTGSKIWKVGVKGEFLSIISSPLFTPKEWYKNLVGL 203 (332)
Q Consensus 124 ~~l~~~d~~~g~~~~~~~l~~~~~~~~~~ndiavd~dG~lyvtd~~~~~I~~v~~~g~~~~~~~~~~~~~p~~~~~~~~~ 203 (332)
+.|.+||+ +++... +.++ . ....|+++++|++|++|+++...+.|++++++|+...+.... ....+
T Consensus 120 ~~i~~~d~-~g~~~~-~~~~--~-~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~g~~~~~~~~~---------~~~~~ 185 (299)
T 2z2n_A 120 NRIGRITD-DGKIRE-YELP--N-KGSYPSFITLGSDNALWFTENQNNAIGRITESGDITEFKIPT---------PASGP 185 (299)
T ss_dssp TEEEEECT-TCCEEE-EECS--S-TTCCEEEEEECTTSCEEEEETTTTEEEEECTTCCEEEEECSS---------TTCCE
T ss_pred ceEEEECC-CCCEEE-ecCC--C-CCCCCceEEEcCCCCEEEEeCCCCEEEEEcCCCcEEEeeCCC---------CCCcc
Confidence 57899998 666543 2332 1 246799999999999999999999999999987765432111 13457
Q ss_pred CeEEEccCceEEEEeCCCCeEEEEeCCCCCCccceeEEEEecCCCCCCCCeEEEeCCCeEEEEeCC-ceEEEEcCCCceE
Q 020019 204 NGIVYHPDGFLIVIHTFSGNLFKIDIVDGVGEGEEIKLIRVAGGPLSFGDGLELLSPTKLVVAGNP-SARLVESSDGWET 282 (332)
Q Consensus 204 nGi~~~~dG~Lyva~~~~~~i~~id~~~~~~~~~~~~~v~~~g~~~~~pdGi~~~~dG~l~va~~~-~~~~v~~~dg~~~ 282 (332)
.+|+++++|.||+++...+.|+++++ ++ ....+..+ .....|.+|+++++|+||+++.. ....+..+++ +.
T Consensus 186 ~~i~~~~~g~l~v~~~~~~~i~~~~~-~g-----~~~~~~~~-~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~d~~g-~~ 257 (299)
T 2z2n_A 186 VGITKGNDDALWFVEIIGNKIGRITT-SG-----EITEFKIP-TPNARPHAITAGAGIDLWFTEWGANKIGRLTSNN-II 257 (299)
T ss_dssp EEEEECTTSSEEEEETTTTEEEEECT-TC-----CEEEEECS-STTCCEEEEEECSTTCEEEEETTTTEEEEEETTT-EE
T ss_pred eeEEECCCCCEEEEccCCceEEEECC-CC-----cEEEEECC-CCCCCceeEEECCCCCEEEeccCCceEEEECCCC-ce
Confidence 89999999999999998999999998 55 33444444 24567999999999999999743 2222344466 33
Q ss_pred EEEEeeecCCCcccceEEEEECCeEEEEEe
Q 020019 283 AAVVAKFSGPVHRLATAATVKDGRVYLNHM 312 (332)
Q Consensus 283 ~~~~~~~~~~~~~~pt~va~~~g~lyv~~~ 312 (332)
..+. +. .....|.++++.+++||++..
T Consensus 258 ~~~~--~~-~~~~~~~~i~~~~g~l~v~~~ 284 (299)
T 2z2n_A 258 EEYP--IQ-IKSAEPHGICFDGETIWFAME 284 (299)
T ss_dssp EEEE--CS-SSSCCEEEEEECSSCEEEEET
T ss_pred EEEe--CC-CCCCccceEEecCCCEEEEec
Confidence 2221 11 224568888887889999764
|
| >1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 | Back alignment and structure |
|---|
Probab=99.85 E-value=1.2e-18 Score=159.79 Aligned_cols=221 Identities=16% Similarity=0.118 Sum_probs=151.5
Q ss_pred CCccccceEEcCC-CCEEEEEecCCeEEEEECCCC---CCCccceeeeEEecccCcCCCccceEEEeCCCCeEEEEEeCc
Q 020019 43 SSFFRECAKWDDS-GRRFIVSFLDGGIGQVAVPDD---YPPGTVLEEVTLVKDLELTGNGSLGLVLDHPRNRLLVVAADV 118 (332)
Q Consensus 43 ~~~~pegia~d~~-g~~~~~~~~~g~I~~vd~~~~---~~~~~~~~~~~~~~~~~~~~~~~~gi~vd~~~g~l~v~~~~~ 118 (332)
....|+++++|++ +++|+++...++|+++++++. .. .+ .+.. .++ ..|.||++|..+++||+++..
T Consensus 28 ~~~~p~g~~~d~~~~~ly~~D~~~~~I~~~~~~g~~~~~~----~~--~~~~-~~~--~~p~glavd~~~~~ly~~d~~- 97 (316)
T 1ijq_A 28 NLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSS----YD--TVIS-RDI--QAPDGLAVDWIHSNIYWTDSV- 97 (316)
T ss_dssp SCSSEEEEEEETTTTEEEEEETTTTEEEEEEC------------CE--EEEC-SSC--SCCCEEEEETTTTEEEEEETT-
T ss_pred CCCceEEEEEEeCCCEEEEEECCCCcEEEEECCCCCCCcc----cE--EEEe-CCC--CCcCEEEEeecCCeEEEEECC-
Confidence 3348999999986 567777888899999998751 21 11 2332 122 378999999756899999864
Q ss_pred CCCccceEEEEECCCCcEEEEEecCCCCCCCCCccceEECCC-CcEEEEeCCC-CeEEEEcCCCceEEEecCCCCCCccc
Q 020019 119 FGNKYSAVAAYDLSTWNRLFLTQLSGPSDGKSCADDVTVDAE-GNAYVTDVTG-SKIWKVGVKGEFLSIISSPLFTPKEW 196 (332)
Q Consensus 119 ~~~~~~~l~~~d~~~g~~~~~~~l~~~~~~~~~~ndiavd~d-G~lyvtd~~~-~~I~~v~~~g~~~~~~~~~~~~~p~~ 196 (332)
...|.++|++.......... ....|+++++||+ |.+|++|+.. ++|++++++|+....+...
T Consensus 98 ----~~~I~~~~~~g~~~~~~~~~-----~~~~P~~iavdp~~g~ly~~d~~~~~~I~~~~~dG~~~~~~~~~------- 161 (316)
T 1ijq_A 98 ----LGTVSVADTKGVKRKTLFRE-----NGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLVTE------- 161 (316)
T ss_dssp ----TTEEEEEETTSSSEEEEEEC-----TTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCCEEEEECS-------
T ss_pred ----CCEEEEEeCCCCceEEEEEC-----CCCCcceEEeCCCCCEEEEEccCCCCeEEEEcCCCCCeEEEEEC-------
Confidence 45789999875444333321 2468999999984 7899999986 8999999999865543222
Q ss_pred ccCccccCeEEEccCc-eEEEEeCCCCeEEEEeCCCCCCccceeEEEEecCCCCCCCCeEEEeCCCeEEEEeCCceEE--
Q 020019 197 YKNLVGLNGIVYHPDG-FLIVIHTFSGNLFKIDIVDGVGEGEEIKLIRVAGGPLSFGDGLELLSPTKLVVAGNPSARL-- 273 (332)
Q Consensus 197 ~~~~~~~nGi~~~~dG-~Lyva~~~~~~i~~id~~~~~~~~~~~~~v~~~g~~~~~pdGi~~~~dG~l~va~~~~~~~-- 273 (332)
.+..|+||++++++ +||+++...++|+++++++. ..+.+...+..+..|+||+++. +.||+++....++
T Consensus 162 --~~~~P~gla~d~~~~~lY~~D~~~~~I~~~d~dg~-----~~~~~~~~~~~~~~P~giav~~-~~ly~~d~~~~~V~~ 233 (316)
T 1ijq_A 162 --NIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGG-----NRKTILEDEKRLAHPFSLAVFE-DKVFWTDIINEAIFS 233 (316)
T ss_dssp --SCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSC-----SCEEEEECTTTTSSEEEEEEET-TEEEEEETTTTEEEE
T ss_pred --CCCCceEEEEeccCCEEEEEECCCCeEEEEecCCC-----ceEEEeecCCccCCcEEEEEEC-CEEEEEECCCCeEEE
Confidence 23568999999876 99999999999999999854 2333322213467899999985 8999998554333
Q ss_pred EEcCCCceEEEEEeeecCCCcccceEEEE
Q 020019 274 VESSDGWETAAVVAKFSGPVHRLATAATV 302 (332)
Q Consensus 274 v~~~dg~~~~~~~~~~~~~~~~~pt~va~ 302 (332)
+...+|.....+.. .+..|.++++
T Consensus 234 ~~~~~g~~~~~i~~-----~~~~p~~i~v 257 (316)
T 1ijq_A 234 ANRLTGSDVNLLAE-----NLLSPEDMVL 257 (316)
T ss_dssp EETTTCCCCEEEEC-----SCSCCCCEEE
T ss_pred EeCCCCcceEEEec-----CCCCceEEEE
Confidence 23345622222322 2455666665
|
| >2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A | Back alignment and structure |
|---|
Probab=99.84 E-value=2.8e-18 Score=156.93 Aligned_cols=241 Identities=20% Similarity=0.181 Sum_probs=163.4
Q ss_pred EecCCccccceEEcCCCCEEEEEecCCeEEEEECCCCCCCccceeeeEEecccCcCCCccceEEEeCCCCeEEEEEeCcC
Q 020019 40 YHSSSFFRECAKWDDSGRRFIVSFLDGGIGQVAVPDDYPPGTVLEEVTLVKDLELTGNGSLGLVLDHPRNRLLVVAADVF 119 (332)
Q Consensus 40 ~~~~~~~pegia~d~~g~~~~~~~~~g~I~~vd~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~vd~~~g~l~v~~~~~~ 119 (332)
+......|++++++++|++|+++...+.|+++++++++. . .+.... ...+.+|+++++ |++|++.....
T Consensus 40 ~~~~~~~~~~~~~~~~g~l~~~~~~~~~i~~~d~~~~~~-----~--~~~~~~---~~~~~~i~~~~d-g~l~v~~~~~~ 108 (333)
T 2dg1_A 40 ISKKGLQLEGLNFDRQGQLFLLDVFEGNIFKINPETKEI-----K--RPFVSH---KANPAAIKIHKD-GRLFVCYLGDF 108 (333)
T ss_dssp EESSCCCEEEEEECTTSCEEEEETTTCEEEEECTTTCCE-----E--EEEECS---SSSEEEEEECTT-SCEEEEECTTS
T ss_pred EeccCccccCcEECCCCCEEEEECCCCEEEEEeCCCCcE-----E--EEeeCC---CCCcceEEECCC-CcEEEEeCCCC
Confidence 344445889999999999988887789999999886652 1 232111 236899999996 89999975310
Q ss_pred CCccceEEEEECCCCcEEEEEecCCCCCCCCCccceEECCCCcEEEEeCC------CCeEEEEcCCC-ceEEEecCCCCC
Q 020019 120 GNKYSAVAAYDLSTWNRLFLTQLSGPSDGKSCADDVTVDAEGNAYVTDVT------GSKIWKVGVKG-EFLSIISSPLFT 192 (332)
Q Consensus 120 ~~~~~~l~~~d~~~g~~~~~~~l~~~~~~~~~~ndiavd~dG~lyvtd~~------~~~I~~v~~~g-~~~~~~~~~~~~ 192 (332)
. ....|++||+++++......- ......++++++|++|++|+++.. .+.|+++++++ +...+..
T Consensus 109 ~-~~~~i~~~d~~~~~~~~~~~~---~~~~~~~~~i~~d~~g~l~v~~~~~~~~~~~~~l~~~~~~~~~~~~~~~----- 179 (333)
T 2dg1_A 109 K-STGGIFAATENGDNLQDIIED---LSTAYCIDDMVFDSKGGFYFTDFRGYSTNPLGGVYYVSPDFRTVTPIIQ----- 179 (333)
T ss_dssp S-SCCEEEEECTTSCSCEEEECS---SSSCCCEEEEEECTTSCEEEEECCCBTTBCCEEEEEECTTSCCEEEEEE-----
T ss_pred C-CCceEEEEeCCCCEEEEEEcc---CccCCcccceEECCCCCEEEEeccccccCCCceEEEEeCCCCEEEEeec-----
Confidence 0 114799999988776533321 112357999999999999999875 47899999885 4433321
Q ss_pred CcccccCccccCeEEEccCc-eEEEEeCCCCeEEEEeCCC-CCCccceeEE----EEecCCCCCCCCeEEEeCCCeEEEE
Q 020019 193 PKEWYKNLVGLNGIVYHPDG-FLIVIHTFSGNLFKIDIVD-GVGEGEEIKL----IRVAGGPLSFGDGLELLSPTKLVVA 266 (332)
Q Consensus 193 ~p~~~~~~~~~nGi~~~~dG-~Lyva~~~~~~i~~id~~~-~~~~~~~~~~----v~~~g~~~~~pdGi~~~~dG~l~va 266 (332)
....++++++++|| .||+++...++|+++++++ +. .... +.........|++|+++++|++|++
T Consensus 180 ------~~~~~~~i~~~~dg~~l~v~~~~~~~i~~~d~~~~g~----~~~~~~~~~~~~~~~~~~~~~i~~d~~G~l~v~ 249 (333)
T 2dg1_A 180 ------NISVANGIALSTDEKVLWVTETTANRLHRIALEDDGV----TIQPFGATIPYYFTGHEGPDSCCIDSDDNLYVA 249 (333)
T ss_dssp ------EESSEEEEEECTTSSEEEEEEGGGTEEEEEEECTTSS----SEEEEEEEEEEECCSSSEEEEEEEBTTCCEEEE
T ss_pred ------CCCcccceEECCCCCEEEEEeCCCCeEEEEEecCCCc----CcccccceEEEecCCCCCCCceEECCCCCEEEE
Confidence 12347899999999 7999998889999999863 31 1211 1111011247999999999999999
Q ss_pred eCC-ceEEEEcCCCceEEEEEeeecCCC-----cccceEEEE-EC-CeEEEEEecC
Q 020019 267 GNP-SARLVESSDGWETAAVVAKFSGPV-----HRLATAATV-KD-GRVYLNHMLG 314 (332)
Q Consensus 267 ~~~-~~~~v~~~dg~~~~~~~~~~~~~~-----~~~pt~va~-~~-g~lyv~~~~g 314 (332)
+.. ....+..+++.. ...+..+. +..|+++++ .+ ++|||++..+
T Consensus 250 ~~~~~~v~~~d~~g~~----~~~~~~~~~~~g~~~~~~~~~~~~dg~~L~v~~~~g 301 (333)
T 2dg1_A 250 MYGQGRVLVFNKRGYP----IGQILIPGRDEGHMLRSTHPQFIPGTNQLIICSNDI 301 (333)
T ss_dssp EETTTEEEEECTTSCE----EEEEECTTGGGTCSCBCCEEEECTTSCEEEEEEECG
T ss_pred EcCCCEEEEECCCCCE----EEEEEcCCCccccccCcceEEECCCCCEEEEEeCcc
Confidence 743 223345556622 22222221 236899999 44 6999976654
|
| >1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ... | Back alignment and structure |
|---|
Probab=99.84 E-value=1.1e-18 Score=157.86 Aligned_cols=238 Identities=20% Similarity=0.220 Sum_probs=161.5
Q ss_pred ecCCccccceEEcCCCCEEEE-------EecCCeEEEEECCCCCCCccceeeeEEecccCc--CCCccceEEEeCCCCeE
Q 020019 41 HSSSFFRECAKWDDSGRRFIV-------SFLDGGIGQVAVPDDYPPGTVLEEVTLVKDLEL--TGNGSLGLVLDHPRNRL 111 (332)
Q Consensus 41 ~~~~~~pegia~d~~g~~~~~-------~~~~g~I~~vd~~~~~~~~~~~~~~~~~~~~~~--~~~~~~gi~vd~~~g~l 111 (332)
...-..|++++++++|++|++ +...++|+++++.+++. . .+. .+.. ....|.++++++++|+|
T Consensus 14 ~~~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~i~~~d~~~g~~-----~--~~~-~~~~~~~~~~~~~i~~~~~~g~l 85 (314)
T 1pjx_A 14 TEDIPGAEGPVFDKNGDFYIVAPEVEVNGKPAGEILRIDLKTGKK-----T--VIC-KPEVNGYGGIPAGCQCDRDANQL 85 (314)
T ss_dssp ECCCTTCEEEEECTTSCEEEEETTCEETTEECCEEEEECTTTCCE-----E--EEE-CCEETTEECCEEEEEECSSSSEE
T ss_pred hccCCCccCceECCCCCEEEEEeccccCCCCCCEEEEEeCCCCcE-----E--EEE-ecccCCCCCCCceEEEecCCCcE
Confidence 333349999999999999998 55678999999776652 1 222 1110 11368999999854899
Q ss_pred EEEEeCcCCCccceEEEEECCCCcEEEE-EecCCCCCCCCCccceEECCCCcEEEEeCCC---------------CeEEE
Q 020019 112 LVVAADVFGNKYSAVAAYDLSTWNRLFL-TQLSGPSDGKSCADDVTVDAEGNAYVTDVTG---------------SKIWK 175 (332)
Q Consensus 112 ~v~~~~~~~~~~~~l~~~d~~~g~~~~~-~~l~~~~~~~~~~ndiavd~dG~lyvtd~~~---------------~~I~~ 175 (332)
|+++.. ..|.+||++ ++.... .... .......++++++|++|++|+++... +.|++
T Consensus 86 ~v~~~~------~~l~~~d~~-g~~~~~~~~~~-~~~~~~~~~~i~~d~~g~l~v~~~~~~~~~~~~~~~~~~~~~~l~~ 157 (314)
T 1pjx_A 86 FVADMR------LGLLVVQTD-GTFEEIAKKDS-EGRRMQGCNDCAFDYEGNLWITAPAGEVAPADYTRSMQEKFGSIYC 157 (314)
T ss_dssp EEEETT------TEEEEEETT-SCEEECCSBCT-TSCBCBCCCEEEECTTSCEEEEECBCBCTTSCCCBTTSSSCEEEEE
T ss_pred EEEECC------CCEEEEeCC-CCEEEEEeccC-CCccccCCcCEEECCCCCEEEEecCcccccccccccccCCCCeEEE
Confidence 999852 368999998 776543 2211 11123579999999999999999765 78999
Q ss_pred EcCCCceEEEecCCCCCCcccccCccccCeEEEc----cCc-eEEEEeCCCCeEEEEeCC-CCCCccceeEEE-EecCCC
Q 020019 176 VGVKGEFLSIISSPLFTPKEWYKNLVGLNGIVYH----PDG-FLIVIHTFSGNLFKIDIV-DGVGEGEEIKLI-RVAGGP 248 (332)
Q Consensus 176 v~~~g~~~~~~~~~~~~~p~~~~~~~~~nGi~~~----~dG-~Lyva~~~~~~i~~id~~-~~~~~~~~~~~v-~~~g~~ 248 (332)
++++|+...+.. ....+++++++ +|| .||+++..+++|++++++ +++. ...+.+ ..++ .
T Consensus 158 ~~~~g~~~~~~~-----------~~~~~~~i~~~~~~d~dg~~l~v~~~~~~~i~~~~~~~~g~~--~~~~~~~~~~~-~ 223 (314)
T 1pjx_A 158 FTTDGQMIQVDT-----------AFQFPNGIAVRHMNDGRPYQLIVAETPTKKLWSYDIKGPAKI--ENKKVWGHIPG-T 223 (314)
T ss_dssp ECTTSCEEEEEE-----------EESSEEEEEEEECTTSCEEEEEEEETTTTEEEEEEEEETTEE--EEEEEEEECCC-C
T ss_pred ECCCCCEEEecc-----------CCCCcceEEEecccCCCCCEEEEEECCCCeEEEEECCCCCcc--ccceEEEECCC-C
Confidence 999877654421 12357899999 999 899999999999999976 3421 011112 2231 2
Q ss_pred C-CCCCeEEEeCCCeEEEEeCC-ceEEEEcCC-CceEEEEEeeecCCCcccceEEEE-ECCe-EEEEEec
Q 020019 249 L-SFGDGLELLSPTKLVVAGNP-SARLVESSD-GWETAAVVAKFSGPVHRLATAATV-KDGR-VYLNHML 313 (332)
Q Consensus 249 ~-~~pdGi~~~~dG~l~va~~~-~~~~v~~~d-g~~~~~~~~~~~~~~~~~pt~va~-~~g~-lyv~~~~ 313 (332)
. ..|++|+++++|+||+++.. ....+..++ | + ....+..+ ...|+++++ .+++ |||++..
T Consensus 224 ~~~~p~~i~~d~~G~l~v~~~~~~~i~~~d~~~g-~---~~~~~~~~-~~~~~~i~~~~dg~~l~v~~~~ 288 (314)
T 1pjx_A 224 HEGGADGMDFDEDNNLLVANWGSSHIEVFGPDGG-Q---PKMRIRCP-FEKPSNLHFKPQTKTIFVTEHE 288 (314)
T ss_dssp SSCEEEEEEEBTTCCEEEEEETTTEEEEECTTCB-S---CSEEEECS-SSCEEEEEECTTSSEEEEEETT
T ss_pred CCCCCCceEECCCCCEEEEEcCCCEEEEEcCCCC-c---EeEEEeCC-CCCceeEEECCCCCEEEEEeCC
Confidence 2 56999999999999999732 223344454 5 2 22222223 357899999 5555 9997654
|
| >3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=99.83 E-value=3.6e-18 Score=163.35 Aligned_cols=241 Identities=8% Similarity=0.090 Sum_probs=160.0
Q ss_pred cccceEEcC--CCCEEEEEecCCeEEEEECCCCCCCccceeeeEEecccCcCCCccceEEEeCCCCeEEEEEeCcCCCcc
Q 020019 46 FRECAKWDD--SGRRFIVSFLDGGIGQVAVPDDYPPGTVLEEVTLVKDLELTGNGSLGLVLDHPRNRLLVVAADVFGNKY 123 (332)
Q Consensus 46 ~pegia~d~--~g~~~~~~~~~g~I~~vd~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~vd~~~g~l~v~~~~~~~~~~ 123 (332)
.|.++++|+ ++++|+++.. ++|+++++++++. . .+.. . ...|.+|+++++.++||+++..... ..
T Consensus 138 ~P~~lavdp~~~g~Lyv~d~~-~~I~~id~~~~~v-----~--~~~~--~--~~~P~~ia~d~~G~~lyvad~~~~~-~~ 204 (430)
T 3tc9_A 138 GAVWLSFDPKNHNHLYLVGEQ-HPTRLIDFEKEYV-----S--TVYS--G--LSKVRTICWTHEADSMIITNDQNNN-DR 204 (430)
T ss_dssp CCCEEEEETTEEEEEEEEEBT-EEEEEEETTTTEE-----E--EEEC--C--CSCEEEEEECTTSSEEEEEECCSCT-TS
T ss_pred CCCEEEECCCCCCeEEEEeCC-CcEEEEECCCCEE-----E--EEec--C--CCCcceEEEeCCCCEEEEEeCCCCc-cc
Confidence 899999996 4788888865 8999999986541 1 3332 2 2479999999974449999864221 11
Q ss_pred ceEEEEECCCCcEEEEEecCCCCCCCCCccceEECC-CCcEEEEeCCCCeEEEEcCCCceE-EEecCCCCCCcccccCcc
Q 020019 124 SAVAAYDLSTWNRLFLTQLSGPSDGKSCADDVTVDA-EGNAYVTDVTGSKIWKVGVKGEFL-SIISSPLFTPKEWYKNLV 201 (332)
Q Consensus 124 ~~l~~~d~~~g~~~~~~~l~~~~~~~~~~ndiavd~-dG~lyvtd~~~~~I~~v~~~g~~~-~~~~~~~~~~p~~~~~~~ 201 (332)
..++.++.+ +.......+. ....|+++++|+ +|+|||+|..+++|+++++++... .+.... ...
T Consensus 205 ~~v~~~~~~-g~~~~~~~l~----~~~~p~giavdp~~g~lyv~d~~~~~V~~~~~~~~~~~~~~~~~---------~~~ 270 (430)
T 3tc9_A 205 PNNYILTRE-SGFKVITELT----KGQNCNGAETHPINGELYFNSWNAGQVFRYDFTTQETTPLFTIQ---------DSG 270 (430)
T ss_dssp EEEEEEEGG-GTSCSEEEEE----ECSSCCCEEECTTTCCEEEEETTTTEEEEEETTTTEEEEEEECS---------SSS
T ss_pred ceEEEEeCC-Cceeeeeeec----cCCCceEEEEeCCCCEEEEEECCCCEEEEEECCCCcEEEEEEcC---------CCC
Confidence 245566654 3322111221 135789999999 789999999999999999986644 332211 124
Q ss_pred ccCeEEEccCc-eEEEEeCCCCeEEEEeCCCCCCccceeEEEEec-C-----------CCCCCCC-eEEEe--------C
Q 020019 202 GLNGIVYHPDG-FLIVIHTFSGNLFKIDIVDGVGEGEEIKLIRVA-G-----------GPLSFGD-GLELL--------S 259 (332)
Q Consensus 202 ~~nGi~~~~dG-~Lyva~~~~~~i~~id~~~~~~~~~~~~~v~~~-g-----------~~~~~pd-Gi~~~--------~ 259 (332)
.|+||+++++| +|||++..+++|++++.+.....-.....+... + ..+..|. |++++ +
T Consensus 271 ~P~gia~~pdG~~lyv~d~~~~~I~~~~~d~~~~~~~~~~~~ag~~g~~g~~dg~~~~a~~~~P~~gv~v~~~~y~~~D~ 350 (430)
T 3tc9_A 271 WEFHIQFHPSGNYAYIVVVNQHYILRSDYDWKTKRLTTPYIVCGQQGAKDWVDGVGKKARMHAPRQGTFVKNPAYKGSSD 350 (430)
T ss_dssp CCEEEEECTTSSEEEEEETTTTEEEEEEEETTTTEECCCEEEEECTTCBCCBCEEGGGCBBSSEEEEEEEECGGGTTSSC
T ss_pred cceeEEEcCCCCEEEEEECCCCEEEEEeCCcccccccceEEEeccCCCCCCCCCCCcceEeCCCcceEEEccccccccCC
Confidence 68899999999 699999999999999887421000011222211 1 2356788 89884 5
Q ss_pred CCeEEEEeC--CceEEEEcCCCceEEEEEeee----cC---------CCcccceEEEE-E-CCeEEEEEecCc
Q 020019 260 PTKLVVAGN--PSARLVESSDGWETAAVVAKF----SG---------PVHRLATAATV-K-DGRVYLNHMLGF 315 (332)
Q Consensus 260 dG~l~va~~--~~~~~v~~~dg~~~~~~~~~~----~~---------~~~~~pt~va~-~-~g~lyv~~~~g~ 315 (332)
+|+|||++. +.++ ++.++| ...++.... .+ .+|..|.++++ . ++.|||++....
T Consensus 351 ~g~lyvaD~~n~~I~-~i~~~G-~v~~~~g~g~~~~~G~~dG~~~~~~~~~~P~giavd~~~g~lyVaD~~n~ 421 (430)
T 3tc9_A 351 EYDFYFCDRENHCIR-ILTPQG-RVTTFAGRGSNGTSGYNDGDLRQEARFNHPEGIVYDEERECFFIGDRENR 421 (430)
T ss_dssp CEEEEEEEGGGTEEE-EECTTS-EEEEEEECCTTSSSSCBCEETTTTCBCSSEEEEEEETTTTEEEEEEGGGT
T ss_pred CCeEEEEECCCcEEE-EECCCC-cEEEEEeCCCCCCCcccCCCchhhcEeCCCcEEEEECCCCEEEEEECCCC
Confidence 699999984 3333 455788 554554421 01 13778999999 4 699999876443
|
| >3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B | Back alignment and structure |
|---|
Probab=99.82 E-value=2.2e-18 Score=158.35 Aligned_cols=216 Identities=15% Similarity=0.097 Sum_probs=150.1
Q ss_pred cccceEEcCC-CCEEEEEecCCeEEEEECCCCCCCccceeeeEEecccCcCCCccceEEEeCCCCeEEEEEeCcCCCccc
Q 020019 46 FRECAKWDDS-GRRFIVSFLDGGIGQVAVPDDYPPGTVLEEVTLVKDLELTGNGSLGLVLDHPRNRLLVVAADVFGNKYS 124 (332)
Q Consensus 46 ~pegia~d~~-g~~~~~~~~~g~I~~vd~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~vd~~~g~l~v~~~~~~~~~~~ 124 (332)
.|.+++|+++ +++|+++...++|++++++++.. .+ .+.. .++ ..|.||++|..+++||+++.. ..
T Consensus 36 ~~~~ld~d~~~~~lyw~D~~~~~I~r~~~~g~~~----~~--~~~~-~~l--~~p~glavd~~~g~ly~~d~~-----~~ 101 (318)
T 3sov_A 36 DAAAVDFVFSHGLIYWSDVSEEAIKRTEFNKTES----VQ--NVVV-SGL--LSPDGLACDWLGEKLYWTDSE-----TN 101 (318)
T ss_dssp EEEEEEEEGGGTEEEEEETTTTEEEEEETTSSSC----CC--EEEE-ECC--SCCCEEEEETTTTEEEEEETT-----TT
T ss_pred ccEEEEEEeCCCEEEEEECCCCcEEEEEccCCCc----eE--EEEc-CCC--CCccEEEEEcCCCeEEEEECC-----CC
Confidence 6778999985 66778888889999999876531 11 2221 122 378999999766999999864 45
Q ss_pred eEEEEECCCCcEEEEEecCCCCCCCCCccceEECCC-CcEEEEeCC-CCeEEEEcCCCceEEEecCCCCCCcccccCccc
Q 020019 125 AVAAYDLSTWNRLFLTQLSGPSDGKSCADDVTVDAE-GNAYVTDVT-GSKIWKVGVKGEFLSIISSPLFTPKEWYKNLVG 202 (332)
Q Consensus 125 ~l~~~d~~~g~~~~~~~l~~~~~~~~~~ndiavd~d-G~lyvtd~~-~~~I~~v~~~g~~~~~~~~~~~~~p~~~~~~~~ 202 (332)
.|.+++++......... .....|+++++||. |.||++|+. .++|++++++|+....+... .+..
T Consensus 102 ~I~~~~~dG~~~~~l~~-----~~~~~P~giavdp~~g~ly~td~~~~~~I~r~~~dG~~~~~~~~~---------~l~~ 167 (318)
T 3sov_A 102 RIEVSNLDGSLRKVLFW-----QELDQPRAIALDPSSGFMYWTDWGEVPKIERAGMDGSSRFIIINS---------EIYW 167 (318)
T ss_dssp EEEEEETTSCSCEEEEC-----SSCSSEEEEEEEGGGTEEEEEECSSSCEEEEEETTSCSCEEEECS---------SCSC
T ss_pred EEEEEECCCCcEEEEEe-----CCCCCccEEEEeCCCCEEEEEecCCCCEEEEEEcCCCCeEEEEEC---------CCCC
Confidence 78999987543332221 22468999999985 789999986 79999999998754433222 2356
Q ss_pred cCeEEEccCc-eEEEEeCCCCeEEEEeCCCCCCccceeEEEEecCCCCCCCCeEEEeCCCeEEEEeCCce--EEEEcCCC
Q 020019 203 LNGIVYHPDG-FLIVIHTFSGNLFKIDIVDGVGEGEEIKLIRVAGGPLSFGDGLELLSPTKLVVAGNPSA--RLVESSDG 279 (332)
Q Consensus 203 ~nGi~~~~dG-~Lyva~~~~~~i~~id~~~~~~~~~~~~~v~~~g~~~~~pdGi~~~~dG~l~va~~~~~--~~v~~~dg 279 (332)
||||++++++ +||++|..+++|+++++++. ..+.+. . ..+..|+||+++. +.+|+++.... ..+...+|
T Consensus 168 Pnglavd~~~~~lY~aD~~~~~I~~~d~dG~-----~~~~~~-~-~~~~~P~glav~~-~~lywtd~~~~~V~~~~~~~G 239 (318)
T 3sov_A 168 PNGLTLDYEEQKLYWADAKLNFIHKSNLDGT-----NRQAVV-K-GSLPHPFALTLFE-DILYWTDWSTHSILACNKYTG 239 (318)
T ss_dssp EEEEEEETTTTEEEEEETTTTEEEEEETTSC-----SCEEEE-C-SCCSCEEEEEEET-TEEEEEETTTTEEEEEETTTC
T ss_pred ccEEEEeccCCEEEEEECCCCEEEEEcCCCC-----ceEEEe-c-CCCCCceEEEEeC-CEEEEEecCCCeEEEEECCCC
Confidence 8999999866 99999999999999999854 233332 2 2567899999985 58999985432 32333456
Q ss_pred ceEEEEEeeecCCCcccceEEEE
Q 020019 280 WETAAVVAKFSGPVHRLATAATV 302 (332)
Q Consensus 280 ~~~~~~~~~~~~~~~~~pt~va~ 302 (332)
.....+.. + +..|.++++
T Consensus 240 ~~~~~i~~----~-~~~P~~i~v 257 (318)
T 3sov_A 240 EGLREIHS----D-IFSPMDIHA 257 (318)
T ss_dssp CSCEEEEC----C-CSSCCCEEE
T ss_pred CceEEEeC----C-CCCCcEEEE
Confidence 33223322 2 445666665
|
| >3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L | Back alignment and structure |
|---|
Probab=99.82 E-value=1.1e-17 Score=158.60 Aligned_cols=222 Identities=17% Similarity=0.092 Sum_probs=151.1
Q ss_pred ccccceEEcCC-CCEEEEEecCCeEEEEECCCCCCCccceeeeEEecccCcCCCccceEEEeCCCCeEEEEEeCcCCCcc
Q 020019 45 FFRECAKWDDS-GRRFIVSFLDGGIGQVAVPDDYPPGTVLEEVTLVKDLELTGNGSLGLVLDHPRNRLLVVAADVFGNKY 123 (332)
Q Consensus 45 ~~pegia~d~~-g~~~~~~~~~g~I~~vd~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~vd~~~g~l~v~~~~~~~~~~ 123 (332)
..|.++++|++ +++|+++...++|+++++++... ..+...+.. .+. ..|.||++|..+++||+++.. .
T Consensus 112 ~~~~~l~~d~~~~~lywsD~~~~~I~~~~~~g~~~---~~~~~~~~~-~~~--~~p~glavD~~~~~lY~~d~~-----~ 180 (400)
T 3p5b_L 112 RNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHG---VSSYDTVIS-RDI--QAPDGLAVDWIHSNIYWTDSV-----L 180 (400)
T ss_dssp SCEEEEEEETTTTEEEEEETTTTEEEEEEC---------CCCEEEEC-SSC--SCEEEEEEETTTTEEEEEETT-----T
T ss_pred CcceEEeeeeccCceEEEecCCCeEEEEEcccCCC---CCcceEEEe-CCC--CCcccEEEEecCCceEEEECC-----C
Confidence 48899999975 66777778889999999875220 000113332 122 378999999866999999864 4
Q ss_pred ceEEEEECCCCcEEEEEecCCCCCCCCCccceEECCC-CcEEEEeCC-CCeEEEEcCCCceEEEecCCCCCCcccccCcc
Q 020019 124 SAVAAYDLSTWNRLFLTQLSGPSDGKSCADDVTVDAE-GNAYVTDVT-GSKIWKVGVKGEFLSIISSPLFTPKEWYKNLV 201 (332)
Q Consensus 124 ~~l~~~d~~~g~~~~~~~l~~~~~~~~~~ndiavd~d-G~lyvtd~~-~~~I~~v~~~g~~~~~~~~~~~~~p~~~~~~~ 201 (332)
..|.+++++.......+.- ....|++|++||. |.||++|++ .+.|++++++|+....+... .+.
T Consensus 181 ~~I~~~~~~g~~~~~l~~~-----~~~~P~~iavdp~~g~ly~td~~~~~~I~~~~~dG~~~~~~~~~---------~l~ 246 (400)
T 3p5b_L 181 GTVSVADTKGVKRKTLFRE-----NGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLVTE---------NIQ 246 (400)
T ss_dssp TEEEEECTTTCSEEEEEEC-----SSCCEEEEEEETTTTEEEEEECSSSCCEEEEETTSCSCEEEECS---------SCS
T ss_pred CeEEEEeCCCCceEEEEeC-----CCCCcceEEEecccCeEEEEeCCCCCEEEEEeCCCCccEEEEEC---------CCC
Confidence 5788999876554433321 2467999999985 789999987 48999999998754433222 235
Q ss_pred ccCeEEEccCc-eEEEEeCCCCeEEEEeCCCCCCccceeEEEEecCCCCCCCCeEEEeCCCeEEEEeCC--ceEEEEcCC
Q 020019 202 GLNGIVYHPDG-FLIVIHTFSGNLFKIDIVDGVGEGEEIKLIRVAGGPLSFGDGLELLSPTKLVVAGNP--SARLVESSD 278 (332)
Q Consensus 202 ~~nGi~~~~dG-~Lyva~~~~~~i~~id~~~~~~~~~~~~~v~~~g~~~~~pdGi~~~~dG~l~va~~~--~~~~v~~~d 278 (332)
.|+||++++++ +|||+|...++|+++++++. ..+.+......+..|.||+++. +.||+++.. .+..+...+
T Consensus 247 ~P~glavd~~~~~lY~aD~~~~~I~~~d~dG~-----~~~~~~~~~~~l~~P~gl~v~~-~~lywtd~~~~~V~~~~~~~ 320 (400)
T 3p5b_L 247 WPNGITLDLLSGRLYWVDSKLHSISSIDVNGG-----NRKTILEDEKRLAHPFSLAVFE-DKVFWTDIINEAIFSANRLT 320 (400)
T ss_dssp CEEEEEEETTTTEEEEEETTTTEEEEEETTSC-----CCEEEEECSSTTSSEEEEEEET-TEEEEEESSSCSEEEEESSS
T ss_pred ceEEEEEEeCCCEEEEEECCCCEEEEEeCCCC-----ccEEEEeCCCCCCCCEEEEEeC-CEEEEecCCCCeEEEEEcCC
Confidence 68999999876 99999999999999999854 2333322213567899999965 689999844 333334466
Q ss_pred CceEEEEEeeecCCCcccceEEEE
Q 020019 279 GWETAAVVAKFSGPVHRLATAATV 302 (332)
Q Consensus 279 g~~~~~~~~~~~~~~~~~pt~va~ 302 (332)
|.....+.. .+..|.++++
T Consensus 321 G~~~~~i~~-----~~~~p~~i~v 339 (400)
T 3p5b_L 321 GSDVNLLAE-----NLLSPEDMVL 339 (400)
T ss_dssp CCCCEEEEC-----SCSCEEEEEE
T ss_pred CCceEEEec-----CCCCCceEEE
Confidence 733333322 2456777776
|
| >3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482} | Back alignment and structure |
|---|
Probab=99.82 E-value=1.4e-17 Score=158.18 Aligned_cols=211 Identities=13% Similarity=0.072 Sum_probs=144.5
Q ss_pred CccccceEEcCCCCEEEEE-ecCC-eEEEEECCCCCCCccceeeeEEecccCcCCCccceEEEeCCCCeEEEEEeCcCCC
Q 020019 44 SFFRECAKWDDSGRRFIVS-FLDG-GIGQVAVPDDYPPGTVLEEVTLVKDLELTGNGSLGLVLDHPRNRLLVVAADVFGN 121 (332)
Q Consensus 44 ~~~pegia~d~~g~~~~~~-~~~g-~I~~vd~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~vd~~~g~l~v~~~~~~~~ 121 (332)
+..|. ++++++|+.+|+. ...+ +|+++++.++.. .. .+-.........|.++++++++|+||+++.
T Consensus 171 ~~~~~-ia~~~~g~~l~~~d~~~~~~I~~~d~~~~~~----~~--~~g~~~~~~~~~p~~iav~p~~g~lyv~d~----- 238 (409)
T 3hrp_A 171 FKGGK-PAVTKDKQRVYSIGWEGTHTVYVYMKASGWA----PT--RIGQLGSTFSGKIGAVALDETEEWLYFVDS----- 238 (409)
T ss_dssp CCBCB-CEECTTSSEEEEEBSSTTCEEEEEEGGGTTC----EE--EEEECCTTSCSCCCBCEECTTSSEEEEECT-----
T ss_pred CCCCc-eeEecCCCcEEEEecCCCceEEEEEcCCCce----eE--EeeeccchhcCCcEEEEEeCCCCeEEEEEC-----
Confidence 44677 9999999876666 4333 899999875542 11 121100102247899999996699999653
Q ss_pred ccceEEEEECCCCcEEEEEecCCCCCCCCCcc-ceEECC-CCcEEEEeCCCCeEEEEcCCCceEEEecCC---CCC-Ccc
Q 020019 122 KYSAVAAYDLSTWNRLFLTQLSGPSDGKSCAD-DVTVDA-EGNAYVTDVTGSKIWKVGVKGEFLSIISSP---LFT-PKE 195 (332)
Q Consensus 122 ~~~~l~~~d~~~g~~~~~~~l~~~~~~~~~~n-diavd~-dG~lyvtd~~~~~I~~v~~~g~~~~~~~~~---~~~-~p~ 195 (332)
.+.|++||++++.................|. +++++| +|++|++|+.+++|++++.+|+...+.... .+. .+.
T Consensus 239 -~~~I~~~d~~~~~~~~~~~~~~~g~~~~~P~~~ia~~p~~g~lyv~d~~~~~I~~~~~~g~~~~~~g~~~~~g~~dg~~ 317 (409)
T 3hrp_A 239 -NKNFGRFNVKTQEVTLIKQLELSGSLGTNPGPYLIYYFVDSNFYMSDQNLSSVYKITPDGECEWFCGSATQKTVQDGLR 317 (409)
T ss_dssp -TCEEEEEETTTCCEEEEEECCCCSCCCCSSCCEEEEETTTTEEEEEETTTTEEEEECTTCCEEEEEECTTCCSCBCEEG
T ss_pred -CCcEEEEECCCCCEEEEecccccCCCCCCccccEEEeCCCCEEEEEeCCCCEEEEEecCCCEEEEEeCCCCCCcCCCcc
Confidence 3579999998876544333211111123344 999999 489999999999999999999866655432 111 111
Q ss_pred cccCccccCeEEEccCceEEEEeC-CCCeEEEEeCCCCCCccceeEEEEec-C-----------CCCCCCCeEEEeCCCe
Q 020019 196 WYKNLVGLNGIVYHPDGFLIVIHT-FSGNLFKIDIVDGVGEGEEIKLIRVA-G-----------GPLSFGDGLELLSPTK 262 (332)
Q Consensus 196 ~~~~~~~~nGi~~~~dG~Lyva~~-~~~~i~~id~~~~~~~~~~~~~v~~~-g-----------~~~~~pdGi~~~~dG~ 262 (332)
....+..|+||+++++|.|||++. .+++|+++++.++ .+..+... + ..+..|.||+++++|+
T Consensus 318 ~~~~~~~P~gia~d~dG~lyvad~~~~~~I~~~~~~~G-----~v~~~~g~~~~~g~~~g~~~~~~~~~P~giavd~~g~ 392 (409)
T 3hrp_A 318 EEALFAQPNGMTVDEDGNFYIVDGFKGYCLRKLDILDG-----YVSTVAGQVDVASQIDGTPLEATFNYPYDICYDGEGG 392 (409)
T ss_dssp GGCBCSSEEEEEECTTCCEEEEETTTTCEEEEEETTTT-----EEEEEEECTTCBSCCCBSTTTCCBSSEEEEEECSSSE
T ss_pred cccEeCCCeEEEEeCCCCEEEEeCCCCCEEEEEECCCC-----EEEEEeCCCCCCCcCCCChhceEeCCceEEEEcCCCC
Confidence 112356799999999999999999 9999999997666 34433321 0 1256799999999999
Q ss_pred EEEEeCCceE
Q 020019 263 LVVAGNPSAR 272 (332)
Q Consensus 263 l~va~~~~~~ 272 (332)
|||++....+
T Consensus 393 lyVad~~n~~ 402 (409)
T 3hrp_A 393 YWIAEAWGKA 402 (409)
T ss_dssp EEEEESTTCE
T ss_pred EEEEECCCCe
Confidence 9999855433
|
| >1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A | Back alignment and structure |
|---|
Probab=99.82 E-value=2.3e-18 Score=152.52 Aligned_cols=188 Identities=18% Similarity=0.210 Sum_probs=139.2
Q ss_pred ccccceEEcCCCCEEEEEecCCeEEEEECCCCCCCccceeeeEEecccCcCCCccceEEEeCCCCeEEEEEeCcCCCccc
Q 020019 45 FFRECAKWDDSGRRFIVSFLDGGIGQVAVPDDYPPGTVLEEVTLVKDLELTGNGSLGLVLDHPRNRLLVVAADVFGNKYS 124 (332)
Q Consensus 45 ~~pegia~d~~g~~~~~~~~~g~I~~vd~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~vd~~~g~l~v~~~~~~~~~~~ 124 (332)
..|.+++++++|++|+++. .++|+++++++... ......+. ..|.+|+++++ |++|+++.. .+
T Consensus 67 ~~p~~i~~~~~g~l~v~~~-~~~i~~~d~~~~~~--------~~~~~~~~--~~p~~i~~~~~-g~l~v~~~~-----~~ 129 (270)
T 1rwi_B 67 YQPQGLAVDGAGTVYVTDF-NNRVVTLAAGSNNQ--------TVLPFDGL--NYPEGLAVDTQ-GAVYVADRG-----NN 129 (270)
T ss_dssp CSCCCEEECTTCCEEEEET-TTEEEEECTTCSCC--------EECCCCSC--SSEEEEEECTT-CCEEEEEGG-----GT
T ss_pred CCcceeEECCCCCEEEEcC-CCEEEEEeCCCceE--------eeeecCCc--CCCcceEECCC-CCEEEEECC-----CC
Confidence 3799999999999888877 78999999875542 12211121 37899999996 899999863 45
Q ss_pred eEEEEECCCCcEEEEEecCCCCCCCCCccceEECCCCcEEEEeCCCCeEEEEcCCCceEEEecCCCCCCcccccCccccC
Q 020019 125 AVAAYDLSTWNRLFLTQLSGPSDGKSCADDVTVDAEGNAYVTDVTGSKIWKVGVKGEFLSIISSPLFTPKEWYKNLVGLN 204 (332)
Q Consensus 125 ~l~~~d~~~g~~~~~~~l~~~~~~~~~~ndiavd~dG~lyvtd~~~~~I~~v~~~g~~~~~~~~~~~~~p~~~~~~~~~n 204 (332)
.|.+|+..+..... .. ......|+++++|++|++|+++...+.|+++++++......... ....|.
T Consensus 130 ~i~~~~~~~~~~~~--~~---~~~~~~p~~i~~~~~g~l~v~~~~~~~i~~~~~~~~~~~~~~~~---------~~~~p~ 195 (270)
T 1rwi_B 130 RVVKLAAGSKTQTV--LP---FTGLNDPDGVAVDNSGNVYVTDTDNNRVVKLEAESNNQVVLPFT---------DITAPW 195 (270)
T ss_dssp EEEEECTTCCSCEE--CC---CCSCCSCCCEEECTTCCEEEEEGGGTEEEEECTTTCCEEECCCS---------SCCSEE
T ss_pred EEEEEECCCceeEe--ec---cccCCCceeEEEeCCCCEEEEECCCCEEEEEecCCCceEeeccc---------CCCCce
Confidence 78889765543321 11 11235799999999999999999999999999987654332111 224678
Q ss_pred eEEEccCceEEEEeCCCCeEEEEeCCCCCCccceeEEEEecCCCCCCCCeEEEeCCCeEEEEeCCc
Q 020019 205 GIVYHPDGFLIVIHTFSGNLFKIDIVDGVGEGEEIKLIRVAGGPLSFGDGLELLSPTKLVVAGNPS 270 (332)
Q Consensus 205 Gi~~~~dG~Lyva~~~~~~i~~id~~~~~~~~~~~~~v~~~g~~~~~pdGi~~~~dG~l~va~~~~ 270 (332)
+|+++++|+||+++..+++|+++++++. ....... ..+..|.+|+++++|+||+++...
T Consensus 196 ~i~~d~~g~l~v~~~~~~~v~~~~~~~~-----~~~~~~~--~~~~~p~~i~~~~~g~l~v~~~~~ 254 (270)
T 1rwi_B 196 GIAVDEAGTVYVTEHNTNQVVKLLAGST-----TSTVLPF--TGLNTPLAVAVDSDRTVYVADRGN 254 (270)
T ss_dssp EEEECTTCCEEEEETTTSCEEEECTTCS-----CCEECCC--CSCSCEEEEEECTTCCEEEEEGGG
T ss_pred EEEECCCCCEEEEECCCCcEEEEcCCCC-----cceeecc--CCCCCceeEEECCCCCEEEEECCC
Confidence 9999999999999999999999998754 2222221 234679999999999999998543
|
| >3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus} | Back alignment and structure |
|---|
Probab=99.81 E-value=1e-17 Score=155.86 Aligned_cols=224 Identities=16% Similarity=0.111 Sum_probs=155.8
Q ss_pred EEcCCCCEEEEEecCCeEEEEECCCCCCCccceeeeEEecccCcCCCccceEEEeCCCCeEEEEEeCcCCCccceEEEEE
Q 020019 51 KWDDSGRRFIVSFLDGGIGQVAVPDDYPPGTVLEEVTLVKDLELTGNGSLGLVLDHPRNRLLVVAADVFGNKYSAVAAYD 130 (332)
Q Consensus 51 a~d~~g~~~~~~~~~g~I~~vd~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~vd~~~g~l~v~~~~~~~~~~~~l~~~d 130 (332)
+.+++..++++. ...|.++++++... + .+.. .. ..|.||++|+.+++||+++.. ..+|++++
T Consensus 40 ~~~~~~~ll~~~--~~~I~~i~~~g~~~-----~--~~~~--~~--~~~~~l~~d~~~~~ly~~D~~-----~~~I~r~~ 101 (349)
T 3v64_C 40 ALGPEPVLLFAN--RIDIRQVLPHRSEY-----T--LLLN--NL--ENAIALDFHHRRELVFWSDVT-----LDRILRAN 101 (349)
T ss_dssp ESSSCCEEEEEC--BSCEEEECTTSCCE-----E--EEEC--SC--SCEEEEEEETTTTEEEEEETT-----TTEEEEEE
T ss_pred ccccCceeEeec--ccceEEEeCCCCee-----E--Eeec--CC--CceEEEEEeccccEEEEEecc-----CCceEEEe
Confidence 344444444433 35799999875542 2 2332 22 368999999877999999863 45799999
Q ss_pred CCCCcEEEEEecCCCCCCCCCccceEECC-CCcEEEEeCCCCeEEEEcCCCceEEEecCCCCCCcccccCccccCeEEEc
Q 020019 131 LSTWNRLFLTQLSGPSDGKSCADDVTVDA-EGNAYVTDVTGSKIWKVGVKGEFLSIISSPLFTPKEWYKNLVGLNGIVYH 209 (332)
Q Consensus 131 ~~~g~~~~~~~l~~~~~~~~~~ndiavd~-dG~lyvtd~~~~~I~~v~~~g~~~~~~~~~~~~~p~~~~~~~~~nGi~~~ 209 (332)
++++....... .+...|.++++|+ +|+||++|...+.|++++.+|+....+... .+..|+||+++
T Consensus 102 ~~g~~~~~~~~-----~~~~~p~glavd~~~g~ly~~d~~~~~I~~~~~dG~~~~~l~~~---------~l~~P~~iavd 167 (349)
T 3v64_C 102 LNGSNVEEVVS-----TGLESPGGLAVDWVHDKLYWTDSGTSRIEVANLDGAHRKVLLWQ---------SLEKPRAIALH 167 (349)
T ss_dssp TTSCSCEEEEC-----SSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECT---------TCSCEEEEEEE
T ss_pred cCCCCceEEEe-----CCCCCccEEEEecCCCeEEEEcCCCCeEEEEcCCCCceEEEEeC---------CCCCcceEEEe
Confidence 98765443322 1246789999997 478999999999999999998754433222 23468999999
Q ss_pred cCc-eEEEEeCCC-CeEEEEeCCCCCCccceeEEEEecCCCCCCCCeEEEeC-CCeEEEEeCCceE-EEEcCCCceEEEE
Q 020019 210 PDG-FLIVIHTFS-GNLFKIDIVDGVGEGEEIKLIRVAGGPLSFGDGLELLS-PTKLVVAGNPSAR-LVESSDGWETAAV 285 (332)
Q Consensus 210 ~dG-~Lyva~~~~-~~i~~id~~~~~~~~~~~~~v~~~g~~~~~pdGi~~~~-dG~l~va~~~~~~-~v~~~dg~~~~~~ 285 (332)
|++ .||+++... ++|+|+++++. ..+.+ .. ..+..|.||++|+ +++||+++....+ .+...+|.....+
T Consensus 168 p~~g~ly~td~~~~~~I~r~~~dG~-----~~~~~-~~-~~~~~PnGla~d~~~~~lY~aD~~~~~I~~~~~dG~~~~~~ 240 (349)
T 3v64_C 168 PMEGTIYWTDWGNTPRIEASSMDGS-----GRRII-AD-THLFWPNGLTIDYAGRRMYWVDAKHHVIERANLDGSHRKAV 240 (349)
T ss_dssp TTTTEEEEEECSSSCEEEEEETTSC-----SCEES-CC-SSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEE
T ss_pred cCcCeEEEeccCCCCEEEEEeCCCC-----CcEEE-EE-CCCCCcceEEEeCCCCEEEEEECCCCEEEEEeCCCCceEEE
Confidence 865 999999998 99999999854 22222 22 3467899999996 6899999854322 2344566222222
Q ss_pred EeeecCCCcccceEEEEECCeEEEEEecCccc
Q 020019 286 VAKFSGPVHRLATAATVKDGRVYLNHMLGFGY 317 (332)
Q Consensus 286 ~~~~~~~~~~~pt~va~~~g~lyv~~~~g~~~ 317 (332)
.. ..+..|.++++.+++||++++....+
T Consensus 241 ~~----~~~~~P~giav~~~~ly~td~~~~~V 268 (349)
T 3v64_C 241 IS----QGLPHPFAITVFEDSLYWTDWHTKSI 268 (349)
T ss_dssp EC----SSCSSEEEEEEETTEEEEEETTTTEE
T ss_pred Ee----CCCCCceEEEEECCEEEEecCCCCeE
Confidence 22 23678999999999999987766544
|
| >3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus} | Back alignment and structure |
|---|
Probab=99.81 E-value=1.8e-17 Score=156.21 Aligned_cols=224 Identities=16% Similarity=0.107 Sum_probs=156.3
Q ss_pred EEcCCCCEEEEEecCCeEEEEECCCCCCCccceeeeEEecccCcCCCccceEEEeCCCCeEEEEEeCcCCCccceEEEEE
Q 020019 51 KWDDSGRRFIVSFLDGGIGQVAVPDDYPPGTVLEEVTLVKDLELTGNGSLGLVLDHPRNRLLVVAADVFGNKYSAVAAYD 130 (332)
Q Consensus 51 a~d~~g~~~~~~~~~g~I~~vd~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~vd~~~g~l~v~~~~~~~~~~~~l~~~d 130 (332)
+.++++.++++. ...|+++++++... + .+.. .. ..|.||++|+.+++||+++.. ..+|++++
T Consensus 83 ~~~~~~~l~~~~--~~~I~~i~~~~~~~-----~--~~~~--~~--~~~~gl~~d~~~~~ly~~D~~-----~~~I~r~~ 144 (386)
T 3v65_B 83 ALGPEPVLLFAN--RIDIRQVLPHRSEY-----T--LLLN--NL--ENAIALDFHHRRELVFWSDVT-----LDRILRAN 144 (386)
T ss_dssp ECSSCCEEEEEC--BSCEEEECTTSCCC-----E--EEEC--SC--SCEEEEEEETTTTEEEEEETT-----TTEEEEEE
T ss_pred CccccceeEeec--CccceeeccCCCcE-----E--EEec--CC--CccEEEEEecCCCeEEEEeCC-----CCcEEEEe
Confidence 334444333332 46899999886552 2 2332 22 378999999877999999863 46799999
Q ss_pred CCCCcEEEEEecCCCCCCCCCccceEECCC-CcEEEEeCCCCeEEEEcCCCceEEEecCCCCCCcccccCccccCeEEEc
Q 020019 131 LSTWNRLFLTQLSGPSDGKSCADDVTVDAE-GNAYVTDVTGSKIWKVGVKGEFLSIISSPLFTPKEWYKNLVGLNGIVYH 209 (332)
Q Consensus 131 ~~~g~~~~~~~l~~~~~~~~~~ndiavd~d-G~lyvtd~~~~~I~~v~~~g~~~~~~~~~~~~~p~~~~~~~~~nGi~~~ 209 (332)
++++....... .+...|+++++|+. |+||++|+..++|++++++|+....+... .+..|+||+++
T Consensus 145 ~~g~~~~~~~~-----~~~~~p~glavd~~~g~lY~~d~~~~~I~~~~~dg~~~~~l~~~---------~l~~P~giavd 210 (386)
T 3v65_B 145 LNGSNVEEVVS-----TGLESPGGLAVDWVHDKLYWTDSGTSRIEVANLDGAHRKVLLWQ---------SLEKPRAIALH 210 (386)
T ss_dssp TTSCCEEEEEC-----SSCSCCCCEEEETTTTEEEEEETTTTEEEECBTTSCSCEEEECS---------SCSCEEEEEEE
T ss_pred cCCCCcEEEEe-----CCCCCccEEEEEeCCCeEEEEcCCCCeEEEEeCCCCceEEeecC---------CCCCCcEEEEE
Confidence 98665443332 12467899999974 78999999999999999998754333222 23468999999
Q ss_pred cCc-eEEEEeCCC-CeEEEEeCCCCCCccceeEEEEecCCCCCCCCeEEEeC-CCeEEEEeCCceE-EEEcCCCceEEEE
Q 020019 210 PDG-FLIVIHTFS-GNLFKIDIVDGVGEGEEIKLIRVAGGPLSFGDGLELLS-PTKLVVAGNPSAR-LVESSDGWETAAV 285 (332)
Q Consensus 210 ~dG-~Lyva~~~~-~~i~~id~~~~~~~~~~~~~v~~~g~~~~~pdGi~~~~-dG~l~va~~~~~~-~v~~~dg~~~~~~ 285 (332)
|++ .||+++... ++|+|+++++. ..+.+. . ..+..|.||++|+ +++||+++....+ .+...+|.....+
T Consensus 211 p~~g~ly~td~~~~~~I~r~~~dG~-----~~~~~~-~-~~~~~PnGlavd~~~~~lY~aD~~~~~I~~~d~dG~~~~~~ 283 (386)
T 3v65_B 211 PMEGTIYWTDWGNTPRIEASSMDGS-----GRRIIA-D-THLFWPNGLTIDYAGRRMYWVDAKHHVIERANLDGSHRKAV 283 (386)
T ss_dssp TTTTEEEEEECSSSCEEEEEETTSC-----SCEEEE-C-SSCSCEEEEEEEGGGTEEEEEETTTTEEEEECTTSCSCEEE
T ss_pred cCCCeEEEeccCCCCEEEEEeCCCC-----CcEEEE-E-CCCCCeeeEEEeCCCCEEEEEECCCCEEEEEeCCCCeeEEE
Confidence 865 999999988 99999999854 233232 2 2467899999995 5899999854322 2345566222223
Q ss_pred EeeecCCCcccceEEEEECCeEEEEEecCccc
Q 020019 286 VAKFSGPVHRLATAATVKDGRVYLNHMLGFGY 317 (332)
Q Consensus 286 ~~~~~~~~~~~pt~va~~~g~lyv~~~~g~~~ 317 (332)
.. ..+..|.++++.+++||++++....+
T Consensus 284 ~~----~~~~~P~giav~~~~ly~td~~~~~V 311 (386)
T 3v65_B 284 IS----QGLPHPFAITVFEDSLYWTDWHTKSI 311 (386)
T ss_dssp EC----SSCSSEEEEEEETTEEEEEETTTTEE
T ss_pred EE----CCCCCceEEEEECCEEEEeeCCCCeE
Confidence 22 23678999999999999988765544
|
| >1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1 | Back alignment and structure |
|---|
Probab=99.80 E-value=3.9e-17 Score=145.45 Aligned_cols=223 Identities=13% Similarity=0.097 Sum_probs=150.7
Q ss_pred EEEEEecCCeEEEEECCCCCCCccceeeeEEecccCcCCCccceEEEeCCCCeEEEEEeCcCCCccceEEEEECCCCcEE
Q 020019 58 RFIVSFLDGGIGQVAVPDDYPPGTVLEEVTLVKDLELTGNGSLGLVLDHPRNRLLVVAADVFGNKYSAVAAYDLSTWNRL 137 (332)
Q Consensus 58 ~~~~~~~~g~I~~vd~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~vd~~~g~l~v~~~~~~~~~~~~l~~~d~~~g~~~ 137 (332)
+|+++ .++|++++.++.... ..+...+...|. ..|.|+++|+++++||+++.. .+.|.++|++++...
T Consensus 4 l~~~~--~~~I~~~~~~g~~~~--~~~~~~~~~~~~---~~~~gi~~d~~~~~ly~~d~~-----~~~I~~~~~~g~~~~ 71 (267)
T 1npe_A 4 LLFAQ--TGKIERLPLERNTMK--KTEAKAFLHIPA---KVIIGLAFDCVDKVVYWTDIS-----EPSIGRASLHGGEPT 71 (267)
T ss_dssp EEEEE--EEEEEEEEESSSCBC--GGGCEEEEEEEE---EEEEEEEEETTTTEEEEEETT-----TTEEEEEESSSCCCE
T ss_pred EEEEc--CCeEEEEEecCcccc--cccceeeecCCC---CcEEEEEEecCCCEEEEEECC-----CCEEEEEecCCCCcE
Confidence 44444 358999998754320 000011222221 268999999976899999863 467999999765543
Q ss_pred EEEecCCCCCCCCCccceEECCC-CcEEEEeCCCCeEEEEcCCCceEEEecCCCCCCcccccCccccCeEEEccC-ceEE
Q 020019 138 FLTQLSGPSDGKSCADDVTVDAE-GNAYVTDVTGSKIWKVGVKGEFLSIISSPLFTPKEWYKNLVGLNGIVYHPD-GFLI 215 (332)
Q Consensus 138 ~~~~l~~~~~~~~~~ndiavd~d-G~lyvtd~~~~~I~~v~~~g~~~~~~~~~~~~~p~~~~~~~~~nGi~~~~d-G~Ly 215 (332)
.... .+...|+++++|++ |++|++|...++|++++.+|+....+... ....|+||+++++ |+||
T Consensus 72 ~~~~-----~~~~~p~~ia~d~~~~~lyv~d~~~~~I~~~~~~g~~~~~~~~~---------~~~~P~~i~vd~~~g~ly 137 (267)
T 1npe_A 72 TIIR-----QDLGSPEGIALDHLGRTIFWTDSQLDRIEVAKMDGTQRRVLFDT---------GLVNPRGIVTDPVRGNLY 137 (267)
T ss_dssp EEEC-----TTCCCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECS---------SCSSEEEEEEETTTTEEE
T ss_pred EEEE-----CCCCCccEEEEEecCCeEEEEECCCCEEEEEEcCCCCEEEEEEC---------CCCCccEEEEeeCCCEEE
Confidence 3221 12468999999996 68999999999999999998643322111 2346899999996 5999
Q ss_pred EEeCC--CCeEEEEeCCCCCCccceeEEEEecCCCCCCCCeEEEeCC-CeEEEEeCCce-EEEEcCCCceEEEEEeeecC
Q 020019 216 VIHTF--SGNLFKIDIVDGVGEGEEIKLIRVAGGPLSFGDGLELLSP-TKLVVAGNPSA-RLVESSDGWETAAVVAKFSG 291 (332)
Q Consensus 216 va~~~--~~~i~~id~~~~~~~~~~~~~v~~~g~~~~~pdGi~~~~d-G~l~va~~~~~-~~v~~~dg~~~~~~~~~~~~ 291 (332)
+++.. +++|++++++.. ..+.+.. ..+..|.||+++++ ++||+++.... ..++..++.....+ +.
T Consensus 138 v~~~~~~~~~I~~~~~dg~-----~~~~~~~--~~~~~P~gia~d~~~~~lyv~d~~~~~I~~~~~~g~~~~~~---~~- 206 (267)
T 1npe_A 138 WTDWNRDNPKIETSHMDGT-----NRRILAQ--DNLGLPNGLTFDAFSSQLCWVDAGTHRAECLNPAQPGRRKV---LE- 206 (267)
T ss_dssp EEECCSSSCEEEEEETTSC-----CCEEEEC--TTCSCEEEEEEETTTTEEEEEETTTTEEEEEETTEEEEEEE---EE-
T ss_pred EEECCCCCcEEEEEecCCC-----CcEEEEE--CCCCCCcEEEEcCCCCEEEEEECCCCEEEEEecCCCceEEE---ec-
Confidence 99987 689999998743 2232322 24568999999986 78999985432 23445555222222 22
Q ss_pred CCcccceEEEEECCeEEEEEecCcccc
Q 020019 292 PVHRLATAATVKDGRVYLNHMLGFGYP 318 (332)
Q Consensus 292 ~~~~~pt~va~~~g~lyv~~~~g~~~~ 318 (332)
.+..|.++++.+++||++++....+.
T Consensus 207 -~~~~P~gi~~d~~~lyva~~~~~~v~ 232 (267)
T 1npe_A 207 -GLQYPFAVTSYGKNLYYTDWKTNSVI 232 (267)
T ss_dssp -CCCSEEEEEEETTEEEEEETTTTEEE
T ss_pred -CCCCceEEEEeCCEEEEEECCCCeEE
Confidence 35679999999999999887665543
|
| >3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A* | Back alignment and structure |
|---|
Probab=99.79 E-value=6.7e-18 Score=155.18 Aligned_cols=207 Identities=10% Similarity=0.041 Sum_probs=142.9
Q ss_pred cccceEEcCCCCEEEEEecCCeEEEEECCCCCCCccceeeeEEec--ccCc---CCCccceEEEeCCCCeEEEEEeCcCC
Q 020019 46 FRECAKWDDSGRRFIVSFLDGGIGQVAVPDDYPPGTVLEEVTLVK--DLEL---TGNGSLGLVLDHPRNRLLVVAADVFG 120 (332)
Q Consensus 46 ~pegia~d~~g~~~~~~~~~g~I~~vd~~~~~~~~~~~~~~~~~~--~~~~---~~~~~~gi~vd~~~g~l~v~~~~~~~ 120 (332)
.|.+++++++|++|+++...++|+++++++.... .. .+-. .++. .-..|.+|++++++|++||++..
T Consensus 92 ~p~gia~d~~g~l~v~d~~~~~v~~~~~~g~~~~---~~--~~~~~~~~g~~~~~~~~P~~ia~~~~~g~lyv~d~~--- 163 (329)
T 3fvz_A 92 LPHGLSIDTDGNYWVTDVALHQVFKLDPHSKEGP---LL--ILGRSMQPGSDQNHFCQPTDVAVEPSTGAVFVSDGY--- 163 (329)
T ss_dssp SEEEEEECTTSCEEEEETTTTEEEEECTTCSSCC---SE--EESBTTBCCCSTTCCSSEEEEEECTTTCCEEEEECS---
T ss_pred CceEEEECCCCCEEEEECCCCEEEEEeCCCCeEE---EE--EecccCCCCCCccccCCCcEEEEeCCCCeEEEEeCC---
Confidence 8999999999999988887899999998754210 11 2211 0111 01369999999945999999851
Q ss_pred CccceEEEEECCCCcEEEEEecCCCC-----CCCCCccceEECCC-CcEEEEeCCCCeEEEEcCC-CceEEEecCCCCC-
Q 020019 121 NKYSAVAAYDLSTWNRLFLTQLSGPS-----DGKSCADDVTVDAE-GNAYVTDVTGSKIWKVGVK-GEFLSIISSPLFT- 192 (332)
Q Consensus 121 ~~~~~l~~~d~~~g~~~~~~~l~~~~-----~~~~~~ndiavd~d-G~lyvtd~~~~~I~~v~~~-g~~~~~~~~~~~~- 192 (332)
...+|.+||. +|+....+...+.. .....|+++++|++ |++||+|+.+++|.+++++ |+....+..+...
T Consensus 164 -~~~~I~~~~~-~g~~~~~~~~~g~~~~~~~~~~~~p~gia~d~~~g~l~v~d~~~~~I~~~~~~~G~~~~~~~~~~~~~ 241 (329)
T 3fvz_A 164 -CNSRIVQFSP-SGKFVTQWGEESSGSSPRPGQFSVPHSLALVPHLDQLCVADRENGRIQCFKTDTKEFVREIKHASFGR 241 (329)
T ss_dssp -SCCEEEEECT-TSCEEEEECEECCSSSCCTTEESCEEEEEEETTTTEEEEEETTTTEEEEEETTTCCEEEEECCTTTTT
T ss_pred -CCCeEEEEcC-CCCEEEEeccCCCCCCCCCcccCCCcEEEEECCCCEEEEEECCCCEEEEEECCCCcEEEEEeccccCC
Confidence 1457999995 56765544322111 11256999999998 8999999999999999998 8876655332221
Q ss_pred CcccccCccccCeEEEccCceEEEEeCCCCeEEEEeCCCCCCccceeEEEEecCCCCCCCCeEEEeCCCeEEEEeCC
Q 020019 193 PKEWYKNLVGLNGIVYHPDGFLIVIHTFSGNLFKIDIVDGVGEGEEIKLIRVAGGPLSFGDGLELLSPTKLVVAGNP 269 (332)
Q Consensus 193 ~p~~~~~~~~~nGi~~~~dG~Lyva~~~~~~i~~id~~~~~~~~~~~~~v~~~g~~~~~pdGi~~~~dG~l~va~~~ 269 (332)
.+. .-...| |++++.+|.+|+++...++|+.+++.+++ .+..+......+..|.+|+++++|+|||++..
T Consensus 242 ~~~--~~~~~p-g~~~~~~g~~~v~~~~~~~v~~~~~~~g~----~~~~~~~~~~~~~~p~~ia~~~dG~lyvad~~ 311 (329)
T 3fvz_A 242 NVF--AISYIP-GFLFAVNGKPYFGDQEPVQGFVMNFSSGE----IIDVFKPVRKHFDMPHDIVASEDGTVYIGDAH 311 (329)
T ss_dssp CEE--EEEEET-TEEEEEECCCCTTCSCCCCEEEEETTTCC----EEEEECCSSSCCSSEEEEEECTTSEEEEEESS
T ss_pred Ccc--eeeecC-CEEEEeCCCEEeccCCCcEEEEEEcCCCe----EEEEEcCCCCccCCeeEEEECCCCCEEEEECC
Confidence 110 001123 56666688888888888899999988773 44444322135678999999999999999843
|
| >3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis} | Back alignment and structure |
|---|
Probab=99.79 E-value=2.9e-17 Score=151.08 Aligned_cols=217 Identities=9% Similarity=-0.004 Sum_probs=151.2
Q ss_pred CccccceEEcCCCCEEEEEecCCeEEEEECCCCCCCccceeeeEEecccCcC--CCccceEEEeCCCCeEEEEEeCcCCC
Q 020019 44 SFFRECAKWDDSGRRFIVSFLDGGIGQVAVPDDYPPGTVLEEVTLVKDLELT--GNGSLGLVLDHPRNRLLVVAADVFGN 121 (332)
Q Consensus 44 ~~~pegia~d~~g~~~~~~~~~g~I~~vd~~~~~~~~~~~~~~~~~~~~~~~--~~~~~gi~vd~~~g~l~v~~~~~~~~ 121 (332)
+..|++++++++|++|+++..+++|+++|+.+++. .. .+. -.... ...|.+|+++ +++|||++.+.
T Consensus 83 ~~~p~~i~~~~~g~lyv~~~~~~~v~~iD~~t~~~----~~--~i~-~g~~~~~~~~p~~i~~~--~~~lyv~~~~~--- 150 (328)
T 3dsm_A 83 FTSPRYIHFLSDEKAYVTQIWDYRIFIINPKTYEI----TG--YIE-CPDMDMESGSTEQMVQY--GKYVYVNCWSY--- 150 (328)
T ss_dssp CSSEEEEEEEETTEEEEEEBSCSEEEEEETTTTEE----EE--EEE-CTTCCTTTCBCCCEEEE--TTEEEEEECTT---
T ss_pred CCCCcEEEEeCCCeEEEEECCCCeEEEEECCCCeE----EE--EEE-cCCccccCCCcceEEEE--CCEEEEEcCCC---
Confidence 45899999988898887776789999999987652 11 221 11100 0268899994 48999997521
Q ss_pred ccceEEEEECCCCcEEEEEecCCCCCCCCCccceEECCCCcEEEEeCCC----------CeEEEEcCC-CceEEEecCCC
Q 020019 122 KYSAVAAYDLSTWNRLFLTQLSGPSDGKSCADDVTVDAEGNAYVTDVTG----------SKIWKVGVK-GEFLSIISSPL 190 (332)
Q Consensus 122 ~~~~l~~~d~~~g~~~~~~~l~~~~~~~~~~ndiavd~dG~lyvtd~~~----------~~I~~v~~~-g~~~~~~~~~~ 190 (332)
.+.|.+||++++++...+.. ...|++++++++|++|+++... +.|+++|++ ++....+..+.
T Consensus 151 -~~~v~viD~~t~~~~~~i~~------g~~p~~i~~~~dG~l~v~~~~~~~~~~~~~~~~~v~~id~~t~~v~~~~~~~~ 223 (328)
T 3dsm_A 151 -QNRILKIDTETDKVVDELTI------GIQPTSLVMDKYNKMWTITDGGYEGSPYGYEAPSLYRIDAETFTVEKQFKFKL 223 (328)
T ss_dssp -CCEEEEEETTTTEEEEEEEC------SSCBCCCEECTTSEEEEEBCCBCTTCSSCBCCCEEEEEETTTTEEEEEEECCT
T ss_pred -CCEEEEEECCCCeEEEEEEc------CCCccceEEcCCCCEEEEECCCccCCccccCCceEEEEECCCCeEEEEEecCC
Confidence 35799999999988776654 2468999999999999998875 899999987 55443332211
Q ss_pred CCCcccccCccccCeEEEccCc-eEEEEeCCCCeEEEEeCCCCCCccceeEEEEecCCCCCCCCeEEEeC-CCeEEEEe-
Q 020019 191 FTPKEWYKNLVGLNGIVYHPDG-FLIVIHTFSGNLFKIDIVDGVGEGEEIKLIRVAGGPLSFGDGLELLS-PTKLVVAG- 267 (332)
Q Consensus 191 ~~~p~~~~~~~~~nGi~~~~dG-~Lyva~~~~~~i~~id~~~~~~~~~~~~~v~~~g~~~~~pdGi~~~~-dG~l~va~- 267 (332)
...|++|+++||| +||+++. +|+++|+++++.. .... .. .....|+||++++ +|+|||++
T Consensus 224 ---------g~~p~~la~~~d~~~lyv~~~---~v~~~d~~t~~~~--~~~~--~~-~~~~~p~gi~vdp~~g~lyva~~ 286 (328)
T 3dsm_A 224 ---------GDWPSEVQLNGTRDTLYWINN---DIWRMPVEADRVP--VRPF--LE-FRDTKYYGLTVNPNNGEVYVADA 286 (328)
T ss_dssp ---------TCCCEEEEECTTSCEEEEESS---SEEEEETTCSSCC--SSCS--BC-CCSSCEEEEEECTTTCCEEEEEC
T ss_pred ---------CCCceeEEEecCCCEEEEEcc---EEEEEECCCCcee--eeee--ec-CCCCceEEEEEcCCCCeEEEEcc
Confidence 1358899999988 9999876 8999999877421 0110 11 1136799999998 79999998
Q ss_pred ---CCce-EEEEcCCCceEEEEEeeecCCCcccceEEEE
Q 020019 268 ---NPSA-RLVESSDGWETAAVVAKFSGPVHRLATAATV 302 (332)
Q Consensus 268 ---~~~~-~~v~~~dg~~~~~~~~~~~~~~~~~pt~va~ 302 (332)
.... ..++.++| +++..+.. ...|.++++
T Consensus 287 ~~y~~~~~V~v~d~~g----~~~~~i~~--G~~P~~~~~ 319 (328)
T 3dsm_A 287 IDYQQQGIVYRYSPQG----KLIDEFYV--GIIPGAFCW 319 (328)
T ss_dssp TTSSSEEEEEEECTTC----CEEEEEEE--EESEEEEEE
T ss_pred cccccCCEEEEECCCC----CEEEEEEe--ccCcceEEE
Confidence 4332 34566667 33333331 356788877
|
| >1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1 | Back alignment and structure |
|---|
Probab=99.79 E-value=3e-17 Score=146.88 Aligned_cols=191 Identities=14% Similarity=0.120 Sum_probs=140.6
Q ss_pred ccccceEE-cCCCCEEEEEec-CCeEEEEECCCCCCCccceeeeEEecccCcCCCccceEEEeCCCCeEEEEEeCcCCCc
Q 020019 45 FFRECAKW-DDSGRRFIVSFL-DGGIGQVAVPDDYPPGTVLEEVTLVKDLELTGNGSLGLVLDHPRNRLLVVAADVFGNK 122 (332)
Q Consensus 45 ~~pegia~-d~~g~~~~~~~~-~g~I~~vd~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~vd~~~g~l~v~~~~~~~~~ 122 (332)
..|.++++ +++|++|+++.. +++|++++.+ ++. .. .+. ... ...|.+|+++++ |++|+++..
T Consensus 77 ~~p~~i~~~~~~g~l~v~~~~~~~~i~~~d~~-g~~----~~--~~~-~~~--~~~~~~i~~~~~-g~l~v~~~~----- 140 (286)
T 1q7f_A 77 LYPNRVAVVRNSGDIIVTERSPTHQIQIYNQY-GQF----VR--KFG-ATI--LQHPRGVTVDNK-GRIIVVECK----- 140 (286)
T ss_dssp SSEEEEEEETTTTEEEEEECGGGCEEEEECTT-SCE----EE--EEC-TTT--CSCEEEEEECTT-SCEEEEETT-----
T ss_pred cCceEEEEEcCCCeEEEEcCCCCCEEEEECCC-CcE----EE--Eec-Ccc--CCCceEEEEeCC-CCEEEEECC-----
Confidence 37899999 588988888853 7899999964 441 11 221 111 137899999996 899999853
Q ss_pred cceEEEEECCCCcEEEEEecCCCCCCCCCccceEECCCCcEEEEeCCCCeEEEEcCCCceEEEecCCCCCCcccccCccc
Q 020019 123 YSAVAAYDLSTWNRLFLTQLSGPSDGKSCADDVTVDAEGNAYVTDVTGSKIWKVGVKGEFLSIISSPLFTPKEWYKNLVG 202 (332)
Q Consensus 123 ~~~l~~~d~~~g~~~~~~~l~~~~~~~~~~ndiavd~dG~lyvtd~~~~~I~~v~~~g~~~~~~~~~~~~~p~~~~~~~~ 202 (332)
.+.|.+||.+ ++....+... .....|+++++|++|++|++++..+.|++++++|+....+.... .+..
T Consensus 141 ~~~i~~~~~~-g~~~~~~~~~---~~~~~p~~i~~~~~g~l~v~~~~~~~i~~~~~~g~~~~~~~~~g--------~~~~ 208 (286)
T 1q7f_A 141 VMRVIIFDQN-GNVLHKFGCS---KHLEFPNGVVVNDKQEIFISDNRAHCVKVFNYEGQYLRQIGGEG--------ITNY 208 (286)
T ss_dssp TTEEEEECTT-SCEEEEEECT---TTCSSEEEEEECSSSEEEEEEGGGTEEEEEETTCCEEEEESCTT--------TSCS
T ss_pred CCEEEEEcCC-CCEEEEeCCC---CccCCcEEEEECCCCCEEEEECCCCEEEEEcCCCCEEEEEccCC--------ccCC
Confidence 4579999975 5555444331 12467999999999999999999999999999988654432211 1246
Q ss_pred cCeEEEccCceEEEEeCCCC-eEEEEeCCCCCCccceeEEEEecCCCCCCCCeEEEeCCCeEEEEeCC
Q 020019 203 LNGIVYHPDGFLIVIHTFSG-NLFKIDIVDGVGEGEEIKLIRVAGGPLSFGDGLELLSPTKLVVAGNP 269 (332)
Q Consensus 203 ~nGi~~~~dG~Lyva~~~~~-~i~~id~~~~~~~~~~~~~v~~~g~~~~~pdGi~~~~dG~l~va~~~ 269 (332)
|.+|+++++|+||+++..++ +|.+++.++. .+..+... .....|.+++++++|+||+++..
T Consensus 209 p~~i~~d~~G~l~v~~~~~~~~i~~~~~~g~-----~~~~~~~~-~~~~~~~~i~~~~~g~l~vs~~~ 270 (286)
T 1q7f_A 209 PIGVGINSNGEILIADNHNNFNLTIFTQDGQ-----LISALESK-VKHAQCFDVALMDDGSVVLASKD 270 (286)
T ss_dssp EEEEEECTTCCEEEEECSSSCEEEEECTTSC-----EEEEEEES-SCCSCEEEEEEETTTEEEEEETT
T ss_pred CcEEEECCCCCEEEEeCCCCEEEEEECCCCC-----EEEEEccc-CCCCcceeEEECCCCcEEEECCC
Confidence 78999999999999999886 9999997643 45555543 23356889999999999999743
|
| >3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis} | Back alignment and structure |
|---|
Probab=99.78 E-value=1.3e-16 Score=146.67 Aligned_cols=226 Identities=12% Similarity=0.045 Sum_probs=159.9
Q ss_pred ccccceEEcCCCCEEEEEecCCeEEEEECCCCCCCccceeeeEEecccCcCCCccceEEEeCCCCeEEEEEeCcCCCccc
Q 020019 45 FFRECAKWDDSGRRFIVSFLDGGIGQVAVPDDYPPGTVLEEVTLVKDLELTGNGSLGLVLDHPRNRLLVVAADVFGNKYS 124 (332)
Q Consensus 45 ~~pegia~d~~g~~~~~~~~~g~I~~vd~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~vd~~~g~l~v~~~~~~~~~~~ 124 (332)
..|++++++. +++|++....+.|.++|+.+++. .. ++ . . +..|.+|+++++ |++|+++.. .+
T Consensus 44 ~~~~~i~~~~-~~lyv~~~~~~~v~viD~~t~~~----~~--~i-~--~--~~~p~~i~~~~~-g~lyv~~~~-----~~ 105 (328)
T 3dsm_A 44 DVAQSMVIRD-GIGWIVVNNSHVIFAIDINTFKE----VG--RI-T--G--FTSPRYIHFLSD-EKAYVTQIW-----DY 105 (328)
T ss_dssp SCEEEEEEET-TEEEEEEGGGTEEEEEETTTCCE----EE--EE-E--C--CSSEEEEEEEET-TEEEEEEBS-----CS
T ss_pred ccceEEEEEC-CEEEEEEcCCCEEEEEECcccEE----EE--Ec-C--C--CCCCcEEEEeCC-CeEEEEECC-----CC
Confidence 3678898864 67888777789999999987762 22 23 1 1 237899999886 899999842 35
Q ss_pred eEEEEECCCCcEEEEEecCCCCCCCCCccceEECCCCcEEEEeCC-CCeEEEEcCC-CceEEEecCCCCCCcccccCccc
Q 020019 125 AVAAYDLSTWNRLFLTQLSGPSDGKSCADDVTVDAEGNAYVTDVT-GSKIWKVGVK-GEFLSIISSPLFTPKEWYKNLVG 202 (332)
Q Consensus 125 ~l~~~d~~~g~~~~~~~l~~~~~~~~~~ndiavd~dG~lyvtd~~-~~~I~~v~~~-g~~~~~~~~~~~~~p~~~~~~~~ 202 (332)
.|.+||++++++...+.+.........|.++++ .++.+|+++++ .+.|.++|+. ++....+.. ...
T Consensus 106 ~v~~iD~~t~~~~~~i~~g~~~~~~~~p~~i~~-~~~~lyv~~~~~~~~v~viD~~t~~~~~~i~~-----------g~~ 173 (328)
T 3dsm_A 106 RIFIINPKTYEITGYIECPDMDMESGSTEQMVQ-YGKYVYVNCWSYQNRILKIDTETDKVVDELTI-----------GIQ 173 (328)
T ss_dssp EEEEEETTTTEEEEEEECTTCCTTTCBCCCEEE-ETTEEEEEECTTCCEEEEEETTTTEEEEEEEC-----------SSC
T ss_pred eEEEEECCCCeEEEEEEcCCccccCCCcceEEE-ECCEEEEEcCCCCCEEEEEECCCCeEEEEEEc-----------CCC
Confidence 799999999988776665211111237899999 46789999984 8899999987 454433321 135
Q ss_pred cCeEEEccCceEEEEeCCC----------CeEEEEeCCCCCCccceeEEEEecCCCCCCCCeEEEeCC-CeEEEEeCCce
Q 020019 203 LNGIVYHPDGFLIVIHTFS----------GNLFKIDIVDGVGEGEEIKLIRVAGGPLSFGDGLELLSP-TKLVVAGNPSA 271 (332)
Q Consensus 203 ~nGi~~~~dG~Lyva~~~~----------~~i~~id~~~~~~~~~~~~~v~~~g~~~~~pdGi~~~~d-G~l~va~~~~~ 271 (332)
|+++++++||.+|++.... ++|++||+++++ ....+.++ ....|.+|+++++ +.||+++. ..
T Consensus 174 p~~i~~~~dG~l~v~~~~~~~~~~~~~~~~~v~~id~~t~~----v~~~~~~~--~g~~p~~la~~~d~~~lyv~~~-~v 246 (328)
T 3dsm_A 174 PTSLVMDKYNKMWTITDGGYEGSPYGYEAPSLYRIDAETFT----VEKQFKFK--LGDWPSEVQLNGTRDTLYWINN-DI 246 (328)
T ss_dssp BCCCEECTTSEEEEEBCCBCTTCSSCBCCCEEEEEETTTTE----EEEEEECC--TTCCCEEEEECTTSCEEEEESS-SE
T ss_pred ccceEEcCCCCEEEEECCCccCCccccCCceEEEEECCCCe----EEEEEecC--CCCCceeEEEecCCCEEEEEcc-EE
Confidence 7899999999999998875 899999998772 44455554 1247999999986 56888876 44
Q ss_pred EEEEcCCCceEEEEEe-eecCCCcccceEEEE--ECCeEEEEE
Q 020019 272 RLVESSDGWETAAVVA-KFSGPVHRLATAATV--KDGRVYLNH 311 (332)
Q Consensus 272 ~~v~~~dg~~~~~~~~-~~~~~~~~~pt~va~--~~g~lyv~~ 311 (332)
..+...++ + +.. .+.......|.++++ .+++|||++
T Consensus 247 ~~~d~~t~-~---~~~~~~~~~~~~~p~gi~vdp~~g~lyva~ 285 (328)
T 3dsm_A 247 WRMPVEAD-R---VPVRPFLEFRDTKYYGLTVNPNNGEVYVAD 285 (328)
T ss_dssp EEEETTCS-S---CCSSCSBCCCSSCEEEEEECTTTCCEEEEE
T ss_pred EEEECCCC-c---eeeeeeecCCCCceEEEEEcCCCCeEEEEc
Confidence 54455555 2 221 111111467999999 389999988
|
| >1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 | Back alignment and structure |
|---|
Probab=99.78 E-value=2.7e-16 Score=144.15 Aligned_cols=214 Identities=14% Similarity=0.111 Sum_probs=147.3
Q ss_pred CCeEEEEECCCCCCCccceeeeEEecccCcCCCccceEEEeCCCCeEEEEEeCcCCCccceEEEEECCC----CcEEEEE
Q 020019 65 DGGIGQVAVPDDYPPGTVLEEVTLVKDLELTGNGSLGLVLDHPRNRLLVVAADVFGNKYSAVAAYDLST----WNRLFLT 140 (332)
Q Consensus 65 ~g~I~~vd~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~vd~~~g~l~v~~~~~~~~~~~~l~~~d~~~----g~~~~~~ 140 (332)
...|.+++.++.+. . .++ +.+ ..|.|+++|+++++||+++.. ...|+++++++ ......
T Consensus 9 ~~~I~~i~~~~~~~-----~--~~~--~~~--~~p~g~~~d~~~~~ly~~D~~-----~~~I~~~~~~g~~~~~~~~~~- 71 (316)
T 1ijq_A 9 RHEVRKMTLDRSEY-----T--SLI--PNL--RNVVALDTEVASNRIYWSDLS-----QRMICSTQLDRAHGVSSYDTV- 71 (316)
T ss_dssp BSSEEEEETTSCCC-----E--EEE--CSC--SSEEEEEEETTTTEEEEEETT-----TTEEEEEEC--------CEEE-
T ss_pred CCeEEEEECCCcce-----E--ehh--cCC--CceEEEEEEeCCCEEEEEECC-----CCcEEEEECCCCCCCcccEEE-
Confidence 36799999886653 1 233 222 378999999877899999864 46799999875 122221
Q ss_pred ecCCCCCCCCCccceEECC-CCcEEEEeCCCCeEEEEcCCCceEEEecCCCCCCcccccCccccCeEEEccCc-eEEEEe
Q 020019 141 QLSGPSDGKSCADDVTVDA-EGNAYVTDVTGSKIWKVGVKGEFLSIISSPLFTPKEWYKNLVGLNGIVYHPDG-FLIVIH 218 (332)
Q Consensus 141 ~l~~~~~~~~~~ndiavd~-dG~lyvtd~~~~~I~~v~~~g~~~~~~~~~~~~~p~~~~~~~~~nGi~~~~dG-~Lyva~ 218 (332)
+. .+...|.++++|+ +|+||++|...+.|.+++++|+....+... .+..|+||+++|++ .||+++
T Consensus 72 -~~---~~~~~p~glavd~~~~~ly~~d~~~~~I~~~~~~g~~~~~~~~~---------~~~~P~~iavdp~~g~ly~~d 138 (316)
T 1ijq_A 72 -IS---RDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFRE---------NGSKPRAIVVDPVHGFMYWTD 138 (316)
T ss_dssp -EC---SSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSSSEEEEEEC---------TTCCEEEEEEETTTTEEEEEE
T ss_pred -Ee---CCCCCcCEEEEeecCCeEEEEECCCCEEEEEeCCCCceEEEEEC---------CCCCcceEEeCCCCCEEEEEc
Confidence 21 1246789999997 578999999999999999998754433221 23468899999855 999999
Q ss_pred CCC-CeEEEEeCCCCCCccceeEEEEecCCCCCCCCeEEEeC-CCeEEEEeCCce-EEEEcCCCceEEEEEeeecCCCcc
Q 020019 219 TFS-GNLFKIDIVDGVGEGEEIKLIRVAGGPLSFGDGLELLS-PTKLVVAGNPSA-RLVESSDGWETAAVVAKFSGPVHR 295 (332)
Q Consensus 219 ~~~-~~i~~id~~~~~~~~~~~~~v~~~g~~~~~pdGi~~~~-dG~l~va~~~~~-~~v~~~dg~~~~~~~~~~~~~~~~ 295 (332)
... ++|+++++++. ..+.+. . ..+..|.||++|+ +++||+++.... ..+...+|.....+... ...+.
T Consensus 139 ~~~~~~I~~~~~dG~-----~~~~~~-~-~~~~~P~gla~d~~~~~lY~~D~~~~~I~~~d~dg~~~~~~~~~--~~~~~ 209 (316)
T 1ijq_A 139 WGTPAKIKKGGLNGV-----DIYSLV-T-ENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRKTILED--EKRLA 209 (316)
T ss_dssp CSSSCEEEEEETTSC-----CEEEEE-C-SSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEEEC--TTTTS
T ss_pred cCCCCeEEEEcCCCC-----CeEEEE-E-CCCCCceEEEEeccCCEEEEEECCCCeEEEEecCCCceEEEeec--CCccC
Confidence 986 89999999843 233332 2 2567899999996 489999985432 22344556233233221 13467
Q ss_pred cceEEEEECCeEEEEEecCccc
Q 020019 296 LATAATVKDGRVYLNHMLGFGY 317 (332)
Q Consensus 296 ~pt~va~~~g~lyv~~~~g~~~ 317 (332)
.|.++++.+++||++++....+
T Consensus 210 ~P~giav~~~~ly~~d~~~~~V 231 (316)
T 1ijq_A 210 HPFSLAVFEDKVFWTDIINEAI 231 (316)
T ss_dssp SEEEEEEETTEEEEEETTTTEE
T ss_pred CcEEEEEECCEEEEEECCCCeE
Confidence 8999999889999988665544
|
| >3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.78 E-value=1.4e-16 Score=162.42 Aligned_cols=223 Identities=16% Similarity=0.090 Sum_probs=151.2
Q ss_pred CccccceEEcCC-CCEEEEEecCCeEEEEECCCCCCCccceeeeEEecccCcCCCccceEEEeCCCCeEEEEEeCcCCCc
Q 020019 44 SFFRECAKWDDS-GRRFIVSFLDGGIGQVAVPDDYPPGTVLEEVTLVKDLELTGNGSLGLVLDHPRNRLLVVAADVFGNK 122 (332)
Q Consensus 44 ~~~pegia~d~~-g~~~~~~~~~g~I~~vd~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~vd~~~g~l~v~~~~~~~~~ 122 (332)
...|.+++++.. +++|+++...++|++++.++.... .+...++. ..+ ..|.||++|...++||+++..
T Consensus 423 ~~~~~gl~~d~~~~~lY~sD~~~~~I~~~~l~g~~~~---~~~~~vi~-~~l--~~P~GLAvD~~~~~LY~tD~~----- 491 (791)
T 3m0c_C 423 LRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGV---SSYDTVIS-RDI--QAPDGLAVDWIHSNIYWTDSV----- 491 (791)
T ss_dssp CSSEEEEEEETTTTEEEEEETTTTEEEEEEC-----------CEEEEC-SSC--SCCCEEEEETTTTEEEEEETT-----
T ss_pred CCceEEEeecccCCeeEEeeccceeEEEEeccCCCCC---cceeEEEe-cCC--CCcceeeeeecCCcEEEEecC-----
Confidence 347899999984 667777787899999998753210 01112332 122 379999999876799999864
Q ss_pred cceEEEEECCCCcEEEEEecCCCCCCCCCccceEECCC-CcEEEEeCCC-CeEEEEcCCCceEEEecCCCCCCcccccCc
Q 020019 123 YSAVAAYDLSTWNRLFLTQLSGPSDGKSCADDVTVDAE-GNAYVTDVTG-SKIWKVGVKGEFLSIISSPLFTPKEWYKNL 200 (332)
Q Consensus 123 ~~~l~~~d~~~g~~~~~~~l~~~~~~~~~~ndiavd~d-G~lyvtd~~~-~~I~~v~~~g~~~~~~~~~~~~~p~~~~~~ 200 (332)
...|.+++++.......+. .....|++|++|+. |.||++|++. ++|++++++|+....+... .+
T Consensus 492 ~~~I~v~~ldG~~~~~l~~-----~~l~~P~gIaVDp~~g~LYwtD~g~~~~I~~~~~dG~~~~~lv~~---------~l 557 (791)
T 3m0c_C 492 LGTVSVADTKGVKRKTLFR-----ENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLVTE---------NI 557 (791)
T ss_dssp TTEEEEEETTSSSEEEEEE-----CTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCCEEEEECS---------SC
T ss_pred CCeEEEEeCCCCeEEEEEe-----CCCCCcceEEEecCCCCEEEecCCCCCeEEEEecCCCceEEEEeC---------CC
Confidence 4679999997554433332 12467999999996 7899999986 8999999999865544332 23
Q ss_pred cccCeEEEccCc-eEEEEeCCCCeEEEEeCCCCCCccceeEEEEecCCCCCCCCeEEEeCCCeEEEEeCCc--eEEEEcC
Q 020019 201 VGLNGIVYHPDG-FLIVIHTFSGNLFKIDIVDGVGEGEEIKLIRVAGGPLSFGDGLELLSPTKLVVAGNPS--ARLVESS 277 (332)
Q Consensus 201 ~~~nGi~~~~dG-~Lyva~~~~~~i~~id~~~~~~~~~~~~~v~~~g~~~~~pdGi~~~~dG~l~va~~~~--~~~v~~~ 277 (332)
..|+||++++.+ +|||++...++|+++++++. ..+.+...+..+..|.||+++. ++||+++... ++.+...
T Consensus 558 ~~P~GLavD~~~~~LYwaD~~~~~I~~~d~dG~-----~~~~v~~~~~~l~~P~glav~~-~~lYwtD~~~~~I~~~dk~ 631 (791)
T 3m0c_C 558 QWPNGITLDLLSGRLYWVDSKLHSISSIDVNGG-----NRKTILEDEKRLAHPFSLAVFE-DKVFWTDIINEAIFSANRL 631 (791)
T ss_dssp SCEEEEEEETTTTEEEEEETTTTEEEEEETTSC-----SCEEEEECTTTTSSEEEEEEET-TEEEEEETTTTEEEEEETT
T ss_pred CCceEEEEecCCCeEEEEeCCCCcEEEEecCCC-----ceEEEecCCCccCCCCEEEEeC-CEEEEEECCCCEEEEEeCC
Confidence 568999999765 99999999999999999854 2333322223567889999975 5999998543 3333345
Q ss_pred CCceEEEEEeeecCCCcccceEEEE
Q 020019 278 DGWETAAVVAKFSGPVHRLATAATV 302 (332)
Q Consensus 278 dg~~~~~~~~~~~~~~~~~pt~va~ 302 (332)
+|.....+.. .+..|.++++
T Consensus 632 tG~~~~~l~~-----~l~~P~~i~v 651 (791)
T 3m0c_C 632 TGSDVNLLAE-----NLLSPEDMVL 651 (791)
T ss_dssp TCCCCEEEEC-----SCSCCCCEEE
T ss_pred CCcceEEeec-----CCCCceeEee
Confidence 6633333322 2445666665
|
| >2ism_A Putative oxidoreductase; BL41XU spring-8, bladed beta-propellor, glucose dehydrogenas structural genomics, NPPSFA; 1.90A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.78 E-value=9.2e-17 Score=149.58 Aligned_cols=255 Identities=17% Similarity=0.138 Sum_probs=153.6
Q ss_pred EEecCCc-cccceEEcCCCCEEEEEecCCeEEEEECCCCCCCccceeeeEEeccc-CcC-CCccceEEEeCC---CCeEE
Q 020019 39 HYHSSSF-FRECAKWDDSGRRFIVSFLDGGIGQVAVPDDYPPGTVLEEVTLVKDL-ELT-GNGSLGLVLDHP---RNRLL 112 (332)
Q Consensus 39 ~~~~~~~-~pegia~d~~g~~~~~~~~~g~I~~vd~~~~~~~~~~~~~~~~~~~~-~~~-~~~~~gi~vd~~---~g~l~ 112 (332)
+....++ .|++++++++|++|++... |+|++++ + ++. + .+...+ ... ..+|.||+++++ ++.||
T Consensus 24 ~~va~~l~~P~~ia~~pdG~l~V~e~~-g~I~~i~-~-g~~-----~--~~~~~~v~~~g~~~p~gia~~pdf~~~g~lY 93 (352)
T 2ism_A 24 EEVVGGLEVPWALAFLPDGGMLIAERP-GRIRLFR-E-GRL-----S--TYAELSVYHRGESGLLGLALHPRFPQEPYVY 93 (352)
T ss_dssp EEEECCCSCEEEEEECTTSCEEEEETT-TEEEEEE-T-TEE-----E--EEEECCCCCSTTCSEEEEEECTTTTTSCEEE
T ss_pred EEEECCCCCceEEEEcCCCeEEEEeCC-CeEEEEE-C-CCc-----c--EeecceEeecCCCCceeEEECCCCCCCCEEE
Confidence 3333444 8999999999998888764 9999998 3 431 1 122111 011 247999999996 68999
Q ss_pred EEEeCcCCCccceEEEEECCCCcEE---EEE-ecCCCCCCCCCccceEECCCCcEEEEeC-------------CCCeEEE
Q 020019 113 VVAADVFGNKYSAVAAYDLSTWNRL---FLT-QLSGPSDGKSCADDVTVDAEGNAYVTDV-------------TGSKIWK 175 (332)
Q Consensus 113 v~~~~~~~~~~~~l~~~d~~~g~~~---~~~-~l~~~~~~~~~~ndiavd~dG~lyvtd~-------------~~~~I~~ 175 (332)
|++.........+|.+|+.+.++.. ..+ .++......+.++++++++||+|||++. ..++|+|
T Consensus 94 v~~~~~~~~~~~~v~r~~~~~~~~~~~~~l~~~~p~~~~~~h~~~~l~~~pdG~Lyv~~G~~~~~~~~~d~~~~~g~I~r 173 (352)
T 2ism_A 94 AYRTVAEGGLRNQVVRLRHLGERGVLDRVVLDGIPARPHGLHSGGRIAFGPDGMLYVTTGEVYERELAQDLASLGGKILR 173 (352)
T ss_dssp EEEEECTTSSEEEEEEEEECSSCEEEEEEEEEEECCCTTCCCCCCCEEECTTSCEEEECCCTTCGGGGGCTTCSSSEEEE
T ss_pred EEEecCCCCCccEEEEEEeCCCCcCceEEEEEeCCCCCCCCcCCceEEECCCCCEEEEECCCCCCccccCCCCCceEEEE
Confidence 9986311001257889988754321 122 2421012346889999999999999963 2479999
Q ss_pred EcCCCceEEEecCCCCC------CcccccCccccCeEEEcc-CceEEEEeCCCCe--------EEEEeCCCC----CCcc
Q 020019 176 VGVKGEFLSIISSPLFT------PKEWYKNLVGLNGIVYHP-DGFLIVIHTFSGN--------LFKIDIVDG----VGEG 236 (332)
Q Consensus 176 v~~~g~~~~~~~~~~~~------~p~~~~~~~~~nGi~~~~-dG~Lyva~~~~~~--------i~~id~~~~----~~~~ 236 (332)
++++|+... .++ |. ......++..|+||++++ +|+||+++...+. |.++..... ...+
T Consensus 174 i~~dG~~p~--~np-f~~~~~~~~~i~a~G~rnp~g~a~d~~~g~l~v~d~g~~~~~~~~~dei~~i~~G~nyGwp~~~g 250 (352)
T 2ism_A 174 LTPEGEPAP--GNP-FLGRRGARPEVYSLGHRNPQGLAWHPKTGELFSSEHGPSGEQGYGHDEVNLIVPGGNYGWPRVVG 250 (352)
T ss_dssp ECTTSSBCT--TCT-TTTCTTSCTTEEEECCSEECCCEECTTTCCEEEEEECC------CCCEEEEECTTCBCCTTTCCS
T ss_pred EcCCCCCCC--CCc-ccCCCCCCccEEEEcCCCcccEEEECCCCCEEEEEcCCCCCCCCCCeEEEEeccCCcCCCCcccC
Confidence 999985321 111 10 011123456799999999 6799999998776 666654320 0000
Q ss_pred --------ceeEEEEecCCCCCCCCeEEEeCCCeEEEEeCCceEE--EEcC-CCce--EEEEEeeecCCCcccceEEEE-
Q 020019 237 --------EEIKLIRVAGGPLSFGDGLELLSPTKLVVAGNPSARL--VESS-DGWE--TAAVVAKFSGPVHRLATAATV- 302 (332)
Q Consensus 237 --------~~~~~v~~~g~~~~~pdGi~~~~dG~l~va~~~~~~~--v~~~-dg~~--~~~~~~~~~~~~~~~pt~va~- 302 (332)
.++ +... +...|.||++ .+|++|+++....++ +... ++.. ..+....+. ....|+++++
T Consensus 251 ~~~~~~~~~p~--~~~~--~~~ap~G~~~-~~G~l~v~~~~~~~v~~v~~~~~~~~~~~~~~~~~~~--~~~rp~~v~~~ 323 (352)
T 2ism_A 251 RGNDPRYRDPL--YFWP--QGFPPGNLAF-FRGDLYVAGLRGQALLRLVLEGERGRWRVLRVETALS--GFGRLREVQVG 323 (352)
T ss_dssp CCCCTTSCCCS--EECT--TCCCEEEEEE-ETTEEEEEETTTTEEEEEEEEEETTEEEEEEEEEEEE--SSCCEEEEEEC
T ss_pred CCCCCCCcCCe--EecC--CCCCCcceEE-ECCEEEEEECCCCEEEEEEECCCCcceeecchheecc--cCCCeeEEEEC
Confidence 011 1111 2346899999 578999998543332 2222 2211 111222221 2456899999
Q ss_pred ECCeEEEEEec
Q 020019 303 KDGRVYLNHML 313 (332)
Q Consensus 303 ~~g~lyv~~~~ 313 (332)
.+|.|||+..-
T Consensus 324 pdG~lyv~~~~ 334 (352)
T 2ism_A 324 PDGALYVTTSN 334 (352)
T ss_dssp TTSCEEEEECS
T ss_pred CCCcEEEEEeC
Confidence 78999997653
|
| >3kya_A Putative phosphatase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE; 1.77A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=99.78 E-value=1.7e-16 Score=152.96 Aligned_cols=246 Identities=9% Similarity=0.030 Sum_probs=158.7
Q ss_pred cccceEEcC--CCCEEEEEecCCeEEEEECCCCCCCccceeeeEEecccCcCCCccceEEE-------eCCCCeEEEEEe
Q 020019 46 FRECAKWDD--SGRRFIVSFLDGGIGQVAVPDDYPPGTVLEEVTLVKDLELTGNGSLGLVL-------DHPRNRLLVVAA 116 (332)
Q Consensus 46 ~pegia~d~--~g~~~~~~~~~g~I~~vd~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~v-------d~~~g~l~v~~~ 116 (332)
.|.++++|| ++++|++....++|+++|++++.. . ++.......-+.|.+|++ +++.++||+++.
T Consensus 140 ~p~~la~dp~~~~~Lyv~~~~~~~i~~ID~~~~~v-----~--~l~~~~~~~~~~p~~ia~~~~~~~~d~~G~~lyvad~ 212 (496)
T 3kya_A 140 DNGRLAFDPLNKDHLYICYDGHKAIQLIDLKNRML-----S--SPLNINTIPTNRIRSIAFNKKIEGYADEAEYMIVAID 212 (496)
T ss_dssp SEEEEEEETTEEEEEEEEEETEEEEEEEETTTTEE-----E--EEECCTTSSCSBEEEEEECCCBTTTBCTTCEEEEEEC
T ss_pred CCCEEEEccCCCCEEEEEECCCCeEEEEECCCCEE-----E--EEEccCccccCCCcEEEEeecccccCCCCCEEEEEeC
Confidence 689999997 377887776567899999886652 2 333221111137999999 997445999986
Q ss_pred CcCC-CccceEEEEECCC-CcEEE---EEecCCCCCCCCCccceEECC-CCcEEEEeCCCCeEEEEcCC-------CceE
Q 020019 117 DVFG-NKYSAVAAYDLST-WNRLF---LTQLSGPSDGKSCADDVTVDA-EGNAYVTDVTGSKIWKVGVK-------GEFL 183 (332)
Q Consensus 117 ~~~~-~~~~~l~~~d~~~-g~~~~---~~~l~~~~~~~~~~ndiavd~-dG~lyvtd~~~~~I~~v~~~-------g~~~ 183 (332)
.... .....++.++.+. |++.. ...+. ....|++++++| +|.||+++...++|++++++ ++..
T Consensus 213 ~~~~~~~~~~V~~i~r~~~G~~~~~~~~~~v~----~~~~p~giavdp~~g~LYvtd~~~g~V~r~d~~~~~~~~~tg~~ 288 (496)
T 3kya_A 213 YDGKGDESPSVYIIKRNADGTFDDRSDIQLIA----AYKQCNGATIHPINGELYFNSYEKGQVFRLDLVDYFKTIKNGGS 288 (496)
T ss_dssp CCTTGGGEEEEEEEECCTTSCCSTTSCEEEEE----EESCCCCEEECTTTCCEEEEETTTTEEEEECHHHHHHHHHTTCC
T ss_pred CCCCcccCceEEEEecCCCCceeecccceeec----cCCCceEEEEcCCCCeEEEEECCCCEEEEEecccccccccCcee
Confidence 4210 0123477787544 33320 01110 124789999999 57899999999999999986 2221
Q ss_pred -------------EEecCCCCCCcccccCccccCeEEEccCc-eEEEEeCCCCeEEEEeCCCCCCccceeEEEEec-C--
Q 020019 184 -------------SIISSPLFTPKEWYKNLVGLNGIVYHPDG-FLIVIHTFSGNLFKIDIVDGVGEGEEIKLIRVA-G-- 246 (332)
Q Consensus 184 -------------~~~~~~~~~~p~~~~~~~~~nGi~~~~dG-~Lyva~~~~~~i~~id~~~~~~~~~~~~~v~~~-g-- 246 (332)
.+... +....|.+|+++|+| .|||+++.+++|+|++++.....-.....+.-. |
T Consensus 289 ~tp~~~~~~g~~~~l~~~---------~~~~~p~~ia~~p~G~~lYvaD~~~h~I~kid~dg~~~~~~~~~~~aG~~g~~ 359 (496)
T 3kya_A 289 WDPIVKNNPNTFKQLFTI---------ADPSWEFQIFIHPTGKYAYFGVINNHYFMRSDYDEIKKEFITPYNFVGGYKQS 359 (496)
T ss_dssp CCCBGGGCTTTEEEEEEC---------SSSSCCEEEEECTTSSEEEEEETTTTEEEEEEEETTTTEECCCEEEEEBTTBC
T ss_pred ecccccccccccceeEec---------CCCCCceEEEEcCCCCEEEEEeCCCCEEEEEecCCCcceecccEEecCCCCCC
Confidence 11111 112357899999999 699999999999998876321000001222211 1
Q ss_pred ---------CCCCCCC-eEEEe-------CCCeEEEEe--CCceEEEEcCCCceEEEEEeeec-------------C---
Q 020019 247 ---------GPLSFGD-GLELL-------SPTKLVVAG--NPSARLVESSDGWETAAVVAKFS-------------G--- 291 (332)
Q Consensus 247 ---------~~~~~pd-Gi~~~-------~dG~l~va~--~~~~~~v~~~dg~~~~~~~~~~~-------------~--- 291 (332)
..+..|. |++++ ++|+|||++ |+.++ ++.++| ...++..... .
T Consensus 360 G~~DG~~~~a~f~~P~~gv~vd~~~~~~~~~g~lyVaD~~N~rIr-~i~~~G-~v~TiaG~g~~~~~~~~~~~G~~dG~~ 437 (496)
T 3kya_A 360 GYRDDVGTEARMNNPCQGVFVKNPDYTGEEEYDFYFVDRLNFCVR-KVTPEG-IVSTYAGRGASTSLADGNQWGTDDGDL 437 (496)
T ss_dssp CCBCCBGGGCBCSSEEEEEEEECTTCCSSCCEEEEEEEGGGTEEE-EECTTC-BEEEEEESCTTHHHHHSCSCCCCCEET
T ss_pred cccCCcccccccCCCeEEEEEccccccccCCCeEEEEECCCCEEE-EEeCCC-CEEEEecccccccccCccccccCCCCc
Confidence 2456799 88887 689999997 44445 355788 5556654310 1
Q ss_pred ---CCcccceEEEE-E-CCeEEEEEec
Q 020019 292 ---PVHRLATAATV-K-DGRVYLNHML 313 (332)
Q Consensus 292 ---~~~~~pt~va~-~-~g~lyv~~~~ 313 (332)
.+|..|.++++ . ++.|||+...
T Consensus 438 ~~~a~f~~P~gIavd~~~g~lyVaD~~ 464 (496)
T 3kya_A 438 REVARFRDVSGLVYDDVKEMFYVHDQV 464 (496)
T ss_dssp TTTCCCSSEEEEEEETTTTEEEEEETT
T ss_pred hhhhhcCCCcEEEEECCCCEEEEEeCC
Confidence 14788999999 4 3999997643
|
| >4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A* | Back alignment and structure |
|---|
Probab=99.77 E-value=1.2e-16 Score=159.61 Aligned_cols=195 Identities=15% Similarity=0.134 Sum_probs=143.6
Q ss_pred cccceEEcCC-CCEEEEEecCCeEEEEECCCCCCCccceeeeEEecccCcCCCccceEEEeCCCCeEEEEEeCcCCCccc
Q 020019 46 FRECAKWDDS-GRRFIVSFLDGGIGQVAVPDDYPPGTVLEEVTLVKDLELTGNGSLGLVLDHPRNRLLVVAADVFGNKYS 124 (332)
Q Consensus 46 ~pegia~d~~-g~~~~~~~~~g~I~~vd~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~vd~~~g~l~v~~~~~~~~~~~ 124 (332)
.|.++++|++ +++|+++...++|+++++++... + .+.. .+. ..|.||++|...++||+++.. ..
T Consensus 38 ~~~~l~~d~~~~~lywtD~~~~~I~r~~~~g~~~-----~--~v~~-~g~--~~P~GlAvD~~~~~LY~tD~~-----~~ 102 (628)
T 4a0p_A 38 EASALDFDVTDNRIYWTDISLKTISRAFMNGSAL-----E--HVVE-FGL--DYPEGMAVDWLGKNLYWADTG-----TN 102 (628)
T ss_dssp CEEEEEEETTTTEEEEEETTTTEEEEEETTSCSC-----E--EEEC-SSC--SCCCEEEEETTTTEEEEEETT-----TT
T ss_pred ceEEEEEECCCCEEEEEECCCCeEEEEECCCCCc-----E--EEEe-CCC--CCcceEEEEeCCCEEEEEECC-----CC
Confidence 7889999986 55677778889999999875542 2 3442 232 379999999877999999874 46
Q ss_pred eEEEEECCCCcEEEEEecCCCCCCCCCccceEECC-CCcEEEEeCC-CCeEEEEcCCCceEEEecCCCCCCcccccCccc
Q 020019 125 AVAAYDLSTWNRLFLTQLSGPSDGKSCADDVTVDA-EGNAYVTDVT-GSKIWKVGVKGEFLSIISSPLFTPKEWYKNLVG 202 (332)
Q Consensus 125 ~l~~~d~~~g~~~~~~~l~~~~~~~~~~ndiavd~-dG~lyvtd~~-~~~I~~v~~~g~~~~~~~~~~~~~p~~~~~~~~ 202 (332)
.|.+++++......... .....|++|++|| +|.||+||++ .++|++++++|+....+.. .+..
T Consensus 103 ~I~v~~~dG~~~~~l~~-----~~l~~P~~iavdp~~G~lY~tD~g~~~~I~r~~~dG~~~~~l~~----------~~~~ 167 (628)
T 4a0p_A 103 RIEVSKLDGQHRQVLVW-----KDLDSPRALALDPAEGFMYWTEWGGKPKIDRAAMDGSERTTLVP----------NVGR 167 (628)
T ss_dssp EEEEEETTSTTCEEEEC-----SSCCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCSCEEEEC----------SCSS
T ss_pred EEEEEecCCCcEEEEEe-----CCCCCcccEEEccCCCeEEEeCCCCCCEEEEEeCCCCceEEEEC----------CCCC
Confidence 79999987544332221 1246799999998 5899999987 7899999999875443322 2346
Q ss_pred cCeEEEccCc-eEEEEeCCCCeEEEEeCCCCCCccceeEEEEecCCCCCCCCeEEEeCCCeEEEEeCCc--eEEEEcCCC
Q 020019 203 LNGIVYHPDG-FLIVIHTFSGNLFKIDIVDGVGEGEEIKLIRVAGGPLSFGDGLELLSPTKLVVAGNPS--ARLVESSDG 279 (332)
Q Consensus 203 ~nGi~~~~dG-~Lyva~~~~~~i~~id~~~~~~~~~~~~~v~~~g~~~~~pdGi~~~~dG~l~va~~~~--~~~v~~~dg 279 (332)
|+||++|+++ +|||++..+++|+++++++. ..+.+. ..+..|.||+++. ++||+++... +..+...+|
T Consensus 168 P~GlalD~~~~~LY~aD~~~~~I~~~d~dG~-----~~~v~~---~~l~~P~glav~~-~~ly~tD~~~~~I~~~dk~tg 238 (628)
T 4a0p_A 168 ANGLTIDYAKRRLYWTDLDTNLIESSNMLGL-----NREVIA---DDLPHPFGLTQYQ-DYIYWTDWSRRSIERANKTSG 238 (628)
T ss_dssp EEEEEEETTTTEEEEEETTTTEEEEEETTSC-----SCEEEE---ECCSCEEEEEEET-TEEEEEETTTTEEEEEETTTC
T ss_pred cceEEEccccCEEEEEECCCCEEEEEcCCCC-----ceEEee---ccCCCceEEEEEC-CEEEEecCCCCEEEEEECCCC
Confidence 8999999976 99999999999999999854 223332 2457899999997 7999998533 333343455
|
| >3a9g_A Putative uncharacterized protein; PQQ dependent dehydrogenase, aldose sugar dehydrogenase, BET propeller fold, oxidoreductase; HET: TRE; 2.39A {Pyrobaculum aerophilum} PDB: 3a9h_A* | Back alignment and structure |
|---|
Probab=99.77 E-value=1.9e-16 Score=147.58 Aligned_cols=256 Identities=16% Similarity=0.121 Sum_probs=155.4
Q ss_pred EEEecCCc-cccceEEcCCCCEEEEEecCCeEEEEECCCCCCCccceeeeEEeccc-CcC-CCccceEEEeCC---CCeE
Q 020019 38 YHYHSSSF-FRECAKWDDSGRRFIVSFLDGGIGQVAVPDDYPPGTVLEEVTLVKDL-ELT-GNGSLGLVLDHP---RNRL 111 (332)
Q Consensus 38 i~~~~~~~-~pegia~d~~g~~~~~~~~~g~I~~vd~~~~~~~~~~~~~~~~~~~~-~~~-~~~~~gi~vd~~---~g~l 111 (332)
++....++ .|++++++++|++|++... |+|++++.+ ++. .+..-+ ... ..++.||+++++ +++|
T Consensus 21 ~~~va~~l~~P~~ia~~pdG~l~V~e~~-g~I~~~d~~-G~~--------~~~~~~v~~~g~~g~~gia~~pdf~~~g~l 90 (354)
T 3a9g_A 21 ISEVASDLEVPWSIAPLGGGRYLVTERP-GRLVLISPS-GKK--------LVASFDVANVGEAGLLGLALHPEFPKKSWV 90 (354)
T ss_dssp EEEEECSCSCEEEEEEEETTEEEEEETT-TEEEEECSS-CEE--------EEEECCCCCSTTCSEEEEEECTTTTTSCEE
T ss_pred EEEEeCCCCCCeEEEEcCCCeEEEEeCC-CEEEEEeCC-Cce--------EeeccceeecCCCceeeEEeCCCCCcCCEE
Confidence 44444455 8999999999998888764 999999754 321 121111 011 137999999996 6899
Q ss_pred EEEEeC--cCCCccceEEEEECCCC--cE---EEEE-ecCCCCCCCCCccceEECCCCcEEEEeC-------------CC
Q 020019 112 LVVAAD--VFGNKYSAVAAYDLSTW--NR---LFLT-QLSGPSDGKSCADDVTVDAEGNAYVTDV-------------TG 170 (332)
Q Consensus 112 ~v~~~~--~~~~~~~~l~~~d~~~g--~~---~~~~-~l~~~~~~~~~~ndiavd~dG~lyvtd~-------------~~ 170 (332)
||+... .......+|.+|+.+.+ +. ...+ .++ ....+.+++|+++|||+|||+.. ..
T Consensus 91 yv~~~~~~~~~~~~~~v~r~~~~~~~~~~~~~~~l~~~~~--~~~~h~~~~l~~~pDG~Lyvt~G~~~~~~~~~d~~~~~ 168 (354)
T 3a9g_A 91 YLYASYFAEGGHIRNRVIRGRLDGSTFKLKEVKTLIDGIP--GAYIHNGGRIRFGPDGMLYITTGDAADPRLAQDLSSLA 168 (354)
T ss_dssp EEEEEEECGGGCEEEEEEEEEECSSSCCEEEEEEEEEEEE--CCSSCCCCCEEECTTSCEEEECCCTTCGGGGTCTTCCS
T ss_pred EEEEeccCCCCCcceEEEEEEECCCCcCcCccEEEEEcCC--CCCCcCCceEEECCCCcEEEEECCCCCCccccCCCCCC
Confidence 999852 00001257889987654 22 1111 232 22346799999999999999853 24
Q ss_pred CeEEEEcCCCceEEEecCCCCC-CcccccCccccCeEEEcc-CceEEEEeCCCCe---EEEEeCCCCCC-----cc----
Q 020019 171 SKIWKVGVKGEFLSIISSPLFT-PKEWYKNLVGLNGIVYHP-DGFLIVIHTFSGN---LFKIDIVDGVG-----EG---- 236 (332)
Q Consensus 171 ~~I~~v~~~g~~~~~~~~~~~~-~p~~~~~~~~~nGi~~~~-dG~Lyva~~~~~~---i~~id~~~~~~-----~~---- 236 (332)
++|+|++++|+... .++ |. ......++.+|+||++++ +|+||+++...++ |.++.... .. .+
T Consensus 169 G~I~ri~~dG~~p~--~np-f~~~~i~a~G~rnp~Gla~d~~~g~l~v~d~g~~~~dei~~i~~G~-nyGwp~~~g~~~~ 244 (354)
T 3a9g_A 169 GKILRVDEEGRPPA--DNP-FPNSPIWSYGHRNPQGIDWHRASGVMVATEHGPVGHDEVNIILKGG-NYGWPLATGKAGR 244 (354)
T ss_dssp SEEEEECTTSCCCT--TSS-STTCCEEEECCSCCCEEEECTTTCCEEEEECCSSSCCEEEEECTTC-BCCTTTCCSCCCC
T ss_pred eEEEEEcCCCCCCC--CCC-CCCCcEEEEccCCcceEEEeCCCCCEEEEecCCCCCcEEEEecCCC-cCCCCcccCCCCC
Confidence 78999999987310 111 11 011122456799999999 6799999998765 55554321 00 00
Q ss_pred -cee-EEEEecCCCCCCCCeEEE-------eCCCeEEEEeCCc--eEEEEcC-CCceEEEEEeeecCCCcccceEEEE-E
Q 020019 237 -EEI-KLIRVAGGPLSFGDGLEL-------LSPTKLVVAGNPS--ARLVESS-DGWETAAVVAKFSGPVHRLATAATV-K 303 (332)
Q Consensus 237 -~~~-~~v~~~g~~~~~pdGi~~-------~~dG~l~va~~~~--~~~v~~~-dg~~~~~~~~~~~~~~~~~pt~va~-~ 303 (332)
... ...... .....|.||++ +.+|++|+++... .+.+... +| +..+....+. .....|.++++ .
T Consensus 245 ~~~~~p~~~~~-~~~~ap~G~~~y~g~~fp~~~G~l~v~~~~~~~v~~~~~~~~g-~~~~~~~~~~-~~~~rp~~v~~~p 321 (354)
T 3a9g_A 245 GEFVDPVIDTG-SETWAPSGASFVHGDMFPGLRGWLLIACLRGSMLAAVNFGDNM-EVRKISTFFK-NVFGRLRDVVIDD 321 (354)
T ss_dssp TTSCCCSEECT-TCCCCEEEEEECCSSSCGGGTTEEEEEETTTTEEEEEEECGGG-CEEEEEEECT-TTSCCEEEEEECT
T ss_pred CCCcCCEeecC-CCCcCCcceEEECCCCCcccCCcEEEEEcCCCEEEEEEECCCC-cccceeeecc-CCCCCeeEEEECC
Confidence 000 011111 12357999999 4679999998543 3323332 23 2222222222 22456899999 7
Q ss_pred CCeEEEEEe
Q 020019 304 DGRVYLNHM 312 (332)
Q Consensus 304 ~g~lyv~~~ 312 (332)
+|.|||+..
T Consensus 322 DG~lyv~~~ 330 (354)
T 3a9g_A 322 DGGILISTS 330 (354)
T ss_dssp TSCEEEEEC
T ss_pred CCcEEEEEe
Confidence 899999764
|
| >4hw6_A Hypothetical protein, IPT/TIG domain protein; putative carbohydrate bindning two domains protein, IPT/TIG (PF01833), 6-beta-propeller; HET: MSE; 1.70A {Bacteroides ovatus} | Back alignment and structure |
|---|
Probab=99.77 E-value=6.9e-17 Score=154.56 Aligned_cols=201 Identities=11% Similarity=0.073 Sum_probs=138.2
Q ss_pred CccccceEEcCCCCEEEEEecC----CeEEEEECCCCCCCccceeeeEEecccCcCCCccceEEEeCCCCeEEEEEeCcC
Q 020019 44 SFFRECAKWDDSGRRFIVSFLD----GGIGQVAVPDDYPPGTVLEEVTLVKDLELTGNGSLGLVLDHPRNRLLVVAADVF 119 (332)
Q Consensus 44 ~~~pegia~d~~g~~~~~~~~~----g~I~~vd~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~vd~~~g~l~v~~~~~~ 119 (332)
...|.+++++++|++|+++... ..++.++...+.. .. .... . ...|.|+++|+++|+|||++..
T Consensus 181 ~~~P~giavd~dG~lyVad~~~~~~~~gv~~~~~~~~~~-----~~-~~~~--~--~~~P~giavd~~~G~lyv~d~~-- 248 (433)
T 4hw6_A 181 IGQCADVNFTLNGDMVVVDDQSSDTNTGIYLFTRASGFT-----ER-LSLC--N--ARGAKTCAVHPQNGKIYYTRYH-- 248 (433)
T ss_dssp CSCEEEEEECTTCCEEEEECCSCTTSEEEEEECGGGTTC-----CE-EEEE--E--CSSBCCCEECTTTCCEEECBTT--
T ss_pred CCCccEEEECCCCCEEEEcCCCCcccceEEEEECCCCee-----cc-cccc--c--cCCCCEEEEeCCCCeEEEEECC--
Confidence 3479999999999988887422 2477776653321 10 1111 1 2479999999955999999863
Q ss_pred CCccceEEEEECCCCcE-EEEEecCCCCCCCCCccceEECCCCc-EEEEeCCCCeEEEEcCCC---ce---EEEecC---
Q 020019 120 GNKYSAVAAYDLSTWNR-LFLTQLSGPSDGKSCADDVTVDAEGN-AYVTDVTGSKIWKVGVKG---EF---LSIISS--- 188 (332)
Q Consensus 120 ~~~~~~l~~~d~~~g~~-~~~~~l~~~~~~~~~~ndiavd~dG~-lyvtd~~~~~I~~v~~~g---~~---~~~~~~--- 188 (332)
.++|++||+++++. ....... ....+.+++++++|+ |||+|+.+++|++++.++ +. ..+...
T Consensus 249 ---~~~V~~~d~~~g~~~~~~~~~~----~~~~~~~ia~dpdG~~LYvad~~~~~I~~~~~d~~~~~~~~~~~~ag~~g~ 321 (433)
T 4hw6_A 249 ---HAMISSYDPATGTLTEEEVMMD----TKGSNFHIVWHPTGDWAYIIYNGKHCIYRVDYNRETGKLAVPYIVCGQHSS 321 (433)
T ss_dssp ---CSEEEEECTTTCCEEEEEEECS----CCSSCEEEEECTTSSEEEEEETTTTEEEEEEBCTTTCCBCCCEEEEECTTC
T ss_pred ---CCEEEEEECCCCeEEEEEeccC----CCCCcccEEEeCCCCEEEEEeCCCCEEEEEeCCCCCcccCcEEEEEecCCC
Confidence 45799999988876 3333331 124556799999997 999999999999988763 21 233322
Q ss_pred CCCC-CcccccCccccCeEEE---------ccCceEEEEeCCCCeEEEEeCCCCCCccceeEEEEecC------------
Q 020019 189 PLFT-PKEWYKNLVGLNGIVY---------HPDGFLIVIHTFSGNLFKIDIVDGVGEGEEIKLIRVAG------------ 246 (332)
Q Consensus 189 ~~~~-~p~~~~~~~~~nGi~~---------~~dG~Lyva~~~~~~i~~id~~~~~~~~~~~~~v~~~g------------ 246 (332)
..+. .+.....+..|.||++ +++|.|||+++.+++|.+|+++ + .+..+...+
T Consensus 322 ~g~~dg~~~~a~~~~P~giav~~n~~y~~dd~~g~lyvaD~~n~~I~~~~~~-G-----~v~t~~G~g~~~~~G~~dG~~ 395 (433)
T 4hw6_A 322 PGWVDGMGTGARLWGPNQGIFVKNEAYAGEEDEYDFYFCDRDSHTVRVLTPE-G-----RVTTYAGRGNSREWGYVDGEL 395 (433)
T ss_dssp CCCBCEEGGGSBCSSEEEEEEEECGGGTTSSCCEEEEEEETTTTEEEEECTT-S-----EEEEEECCCTTCSSCCBCEET
T ss_pred CccCCCcccceEEcCCccEEEEccccccccCCCCcEEEEECCCCEEEEECCC-C-----CEEEEEeCCCCCccccCCCcc
Confidence 1111 1111234667999999 8888999999999999999975 4 333333111
Q ss_pred ---CCCCCCCeEEEe-CCCeEEEEeCC
Q 020019 247 ---GPLSFGDGLELL-SPTKLVVAGNP 269 (332)
Q Consensus 247 ---~~~~~pdGi~~~-~dG~l~va~~~ 269 (332)
..+..|.||+++ ++|+|||++..
T Consensus 396 ~~~~~~~~P~giavd~~~g~lyVaD~~ 422 (433)
T 4hw6_A 396 RSQALFNHPTSIAYDMKRKCFYIGDCD 422 (433)
T ss_dssp TTTCBCSSEEEEEEETTTTEEEEEEGG
T ss_pred ccccEeCCCcEEEEECCCCEEEEEeCC
Confidence 125679999999 88999999843
|
| >3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L | Back alignment and structure |
|---|
Probab=99.76 E-value=8.9e-16 Score=145.33 Aligned_cols=214 Identities=14% Similarity=0.123 Sum_probs=149.2
Q ss_pred CCeEEEEECCCCCCCccceeeeEEecccCcCCCccceEEEeCCCCeEEEEEeCcCCCccceEEEEECCCC----cEEEEE
Q 020019 65 DGGIGQVAVPDDYPPGTVLEEVTLVKDLELTGNGSLGLVLDHPRNRLLVVAADVFGNKYSAVAAYDLSTW----NRLFLT 140 (332)
Q Consensus 65 ~g~I~~vd~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~vd~~~g~l~v~~~~~~~~~~~~l~~~d~~~g----~~~~~~ 140 (332)
...|.+++.++... . .+.. .+ ..+.+|++|+.+++||+++.. ..+|++++++.. .....+
T Consensus 91 ~~~I~~i~l~~~~~-----~--~~~~--~~--~~~~~l~~d~~~~~lywsD~~-----~~~I~~~~~~g~~~~~~~~~~~ 154 (400)
T 3p5b_L 91 RHEVRKMTLDRSEY-----T--SLIP--NL--RNVVALDTEVASNRIYWSDLS-----QRMICSTQLDRAHGVSSYDTVI 154 (400)
T ss_dssp TTEEEEECTTSCSC-----E--EEEC--SC--SCEEEEEEETTTTEEEEEETT-----TTEEEEEEC------CCCEEEE
T ss_pred cceeEEEccCCcce-----e--Eecc--cc--CcceEEeeeeccCceEEEecC-----CCeEEEEEcccCCCCCcceEEE
Confidence 57899999886653 1 2332 22 378999999877999999864 457889998652 222222
Q ss_pred ecCCCCCCCCCccceEECC-CCcEEEEeCCCCeEEEEcCCCceEEEecCCCCCCcccccCccccCeEEEccC-ceEEEEe
Q 020019 141 QLSGPSDGKSCADDVTVDA-EGNAYVTDVTGSKIWKVGVKGEFLSIISSPLFTPKEWYKNLVGLNGIVYHPD-GFLIVIH 218 (332)
Q Consensus 141 ~l~~~~~~~~~~ndiavd~-dG~lyvtd~~~~~I~~v~~~g~~~~~~~~~~~~~p~~~~~~~~~nGi~~~~d-G~Lyva~ 218 (332)
. .....|.++++|. .++||++|+..++|.+++++|+....+... .+..|+||+++|. |.||+++
T Consensus 155 ~-----~~~~~p~glavD~~~~~lY~~d~~~~~I~~~~~~g~~~~~l~~~---------~~~~P~~iavdp~~g~ly~td 220 (400)
T 3p5b_L 155 S-----RDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFRE---------NGSKPRAIVVDPVHGFMYWTD 220 (400)
T ss_dssp C-----SSCSCEEEEEEETTTTEEEEEETTTTEEEEECTTTCSEEEEEEC---------SSCCEEEEEEETTTTEEEEEE
T ss_pred e-----CCCCCcccEEEEecCCceEEEECCCCeEEEEeCCCCceEEEEeC---------CCCCcceEEEecccCeEEEEe
Confidence 1 1246899999998 578999999999999999998865443222 2345789999986 4999999
Q ss_pred CC-CCeEEEEeCCCCCCccceeEEEEecCCCCCCCCeEEEeC-CCeEEEEeCC--ceEEEEcCCCceEEEEEeeecCCCc
Q 020019 219 TF-SGNLFKIDIVDGVGEGEEIKLIRVAGGPLSFGDGLELLS-PTKLVVAGNP--SARLVESSDGWETAAVVAKFSGPVH 294 (332)
Q Consensus 219 ~~-~~~i~~id~~~~~~~~~~~~~v~~~g~~~~~pdGi~~~~-dG~l~va~~~--~~~~v~~~dg~~~~~~~~~~~~~~~ 294 (332)
+. .++|+++++++. ..+.+. . ..+..|.||++|+ +++||+++.. .++ +...+|.....+... ...+
T Consensus 221 ~~~~~~I~~~~~dG~-----~~~~~~-~-~~l~~P~glavd~~~~~lY~aD~~~~~I~-~~d~dG~~~~~~~~~--~~~l 290 (400)
T 3p5b_L 221 WGTPAKIKKGGLNGV-----DIYSLV-T-ENIQWPNGITLDLLSGRLYWVDSKLHSIS-SIDVNGGNRKTILED--EKRL 290 (400)
T ss_dssp CSSSCCEEEEETTSC-----SCEEEE-C-SSCSCEEEEEEETTTTEEEEEETTTTEEE-EEETTSCCCEEEEEC--SSTT
T ss_pred CCCCCEEEEEeCCCC-----ccEEEE-E-CCCCceEEEEEEeCCCEEEEEECCCCEEE-EEeCCCCccEEEEeC--CCCC
Confidence 87 489999999854 233232 2 3567899999995 5899999844 333 344566233333331 1246
Q ss_pred ccceEEEEECCeEEEEEecCcccc
Q 020019 295 RLATAATVKDGRVYLNHMLGFGYP 318 (332)
Q Consensus 295 ~~pt~va~~~g~lyv~~~~g~~~~ 318 (332)
..|.++++.+++||++++....+.
T Consensus 291 ~~P~gl~v~~~~lywtd~~~~~V~ 314 (400)
T 3p5b_L 291 AHPFSLAVFEDKVFWTDIINEAIF 314 (400)
T ss_dssp SSEEEEEEETTEEEEEESSSCSEE
T ss_pred CCCEEEEEeCCEEEEecCCCCeEE
Confidence 789999999999999887665543
|
| >3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} PDB: 4dg6_A* | Back alignment and structure |
|---|
Probab=99.75 E-value=7.3e-16 Score=153.65 Aligned_cols=197 Identities=14% Similarity=0.110 Sum_probs=143.9
Q ss_pred cccceEEcC-CCCEEEEEecCCeEEEEECCCCCCCccceeeeEEecccCcCCCccceEEEeCCCCeEEEEEeCcCCCccc
Q 020019 46 FRECAKWDD-SGRRFIVSFLDGGIGQVAVPDDYPPGTVLEEVTLVKDLELTGNGSLGLVLDHPRNRLLVVAADVFGNKYS 124 (332)
Q Consensus 46 ~pegia~d~-~g~~~~~~~~~g~I~~vd~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~vd~~~g~l~v~~~~~~~~~~~ 124 (332)
.|.++++|+ ++++|+++...++|+++++++... + ++.. .++ ..|.||++|...++||+++.. ..
T Consensus 350 ~~~~ld~d~~~~~ly~sD~~~~~I~r~~~~g~~~-----~--~v~~-~~~--~~p~GlAvD~~~~~lY~tD~~-----~~ 414 (619)
T 3s94_A 350 HAIAIDYDPVEGYIYWTDDEVRAIRRSFIDGSGS-----Q--FVVT-AQI--AHPDGIAVDWVARNLYWTDTG-----TD 414 (619)
T ss_dssp SEEEEEEETTTTEEEEEETTTTEEEEEETTSCSC-----E--EEEC-SSC--SCCCEEEEETTTTEEEEEETT-----TT
T ss_pred ccEEEEEEcCCCeEEEEeCCCCeEEEEEcCCCcc-----E--EEEE-CCC--CCcCceEEecccCcEEEEeCC-----CC
Confidence 678899998 466777888889999999986442 2 3432 222 379999999756899999864 45
Q ss_pred eEEEEECCCCcEEEEEecCCCCCCCCCccceEECCC-CcEEEEeCCC-CeEEEEcCCCceEEEecCCCCCCcccccCccc
Q 020019 125 AVAAYDLSTWNRLFLTQLSGPSDGKSCADDVTVDAE-GNAYVTDVTG-SKIWKVGVKGEFLSIISSPLFTPKEWYKNLVG 202 (332)
Q Consensus 125 ~l~~~d~~~g~~~~~~~l~~~~~~~~~~ndiavd~d-G~lyvtd~~~-~~I~~v~~~g~~~~~~~~~~~~~p~~~~~~~~ 202 (332)
.|.+.+++........ ..+...|++|++||. |.+|+||++. ++|++.+.+|+....+... .+..
T Consensus 415 ~I~v~~~~G~~~~~l~-----~~~l~~P~~iavdp~~G~ly~tD~g~~~~I~r~~~dG~~~~~l~~~---------~l~~ 480 (619)
T 3s94_A 415 RIEVTRLNGTMRKILI-----SEDLEEPRAIVLDPMVGYMYWTDWGEIPKIERAALDGSDRVVLVNT---------SLGW 480 (619)
T ss_dssp EEEEEETTSCSCEEEE-----CTTCCSEEEEEEETTTTEEEEEECSSSCEEEEEETTSCSCEEEECS---------SCSC
T ss_pred cEEEEeCCCCeEEEEE-----ECCCCCeeeEEEEcCCCcEEEecCCCCCEEEEEccCCCccEEEEeC---------CCCC
Confidence 7888988754332222 123578999999996 8999999875 8999999998754433222 2356
Q ss_pred cCeEEEccCc-eEEEEeCCCCeEEEEeCCCCCCccceeEEEEecCCCCCCCCeEEEeCCCeEEEEeCC--ceEEEEcCCC
Q 020019 203 LNGIVYHPDG-FLIVIHTFSGNLFKIDIVDGVGEGEEIKLIRVAGGPLSFGDGLELLSPTKLVVAGNP--SARLVESSDG 279 (332)
Q Consensus 203 ~nGi~~~~dG-~Lyva~~~~~~i~~id~~~~~~~~~~~~~v~~~g~~~~~pdGi~~~~dG~l~va~~~--~~~~v~~~dg 279 (332)
|+||++|+++ +|||++...++|+++++++. ..+.+.. ..+..|.||++..+ .||+++.. .+..+...+|
T Consensus 481 P~GlalD~~~~~LY~aD~~~~~I~~~~~dG~-----~~~~~~~--~~l~~P~glav~~~-~ly~tD~~~~~I~~~~k~~g 552 (619)
T 3s94_A 481 PNGLALDYDEGKIYWGDAKTDKIEVMNTDGT-----GRRVLVE--DKIPHIFGFTLLGD-YVYWTDWQRRSIERVHKRSA 552 (619)
T ss_dssp EEEEEEETTTTEEEEEETTTTEEEEEESSSC-----CCEEEEE--CCCCSSCCEEEETT-EEEEECTTSSCEEEEESSSC
T ss_pred CeeeEEcccCCEEEEEECCCCEEEEEecCCC-----ceEEEec--cCCCCcEEEEEECC-EEEEeecCCCeEEEEEcCCC
Confidence 8999999865 99999999999999999854 2333322 25678999999865 99999854 3444455555
|
| >1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A | Back alignment and structure |
|---|
Probab=99.75 E-value=1.8e-17 Score=167.66 Aligned_cols=220 Identities=17% Similarity=0.114 Sum_probs=149.7
Q ss_pred CccccceEEcCCC-CEEEEEecCCeEEEEECCCC---CCCccceeeeEEecccCcCCCccceEEEeCCCCeEEEEEeCcC
Q 020019 44 SFFRECAKWDDSG-RRFIVSFLDGGIGQVAVPDD---YPPGTVLEEVTLVKDLELTGNGSLGLVLDHPRNRLLVVAADVF 119 (332)
Q Consensus 44 ~~~pegia~d~~g-~~~~~~~~~g~I~~vd~~~~---~~~~~~~~~~~~~~~~~~~~~~~~gi~vd~~~g~l~v~~~~~~ 119 (332)
...|++++|++++ ++|+++...++|+++++++. .. .+ .++ ..++ ..|.||++|...++||+++..
T Consensus 405 ~~~p~gla~d~~~~~Ly~sD~~~~~I~~~~~~g~~~~~~----~~--~~i-~~~~--~~P~glavD~~~g~LY~tD~~-- 473 (699)
T 1n7d_A 405 LRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSS----YD--TVI-SRDI--QAPDGLAVDWIHSNIYWTDSV-- 473 (699)
T ss_dssp CTTCCCCEEETTTTEEEECCTTTTSBEEEESCCCCC-CC----CC--CBC-CSCC----CCCEECCCSSSBCEECCTT--
T ss_pred CcceEEEccccccCeEEEEecCCCeEEEEecCCCCCCcc----eE--EEE-eCCC--CCcceEEEEeeCCcEEEEecc--
Confidence 3489999999865 56666677899999998751 11 01 222 1122 368999999666899999753
Q ss_pred CCccceEEEEECCCCcEEEEEecCCCCCCCCCccceEECCC-CcEEEEeCCC-CeEEEEcCCCceEEEecCCCCCCcccc
Q 020019 120 GNKYSAVAAYDLSTWNRLFLTQLSGPSDGKSCADDVTVDAE-GNAYVTDVTG-SKIWKVGVKGEFLSIISSPLFTPKEWY 197 (332)
Q Consensus 120 ~~~~~~l~~~d~~~g~~~~~~~l~~~~~~~~~~ndiavd~d-G~lyvtd~~~-~~I~~v~~~g~~~~~~~~~~~~~p~~~ 197 (332)
...|.+++++......++. .....|++|++||+ |.||++|+.. +.|++++++|+....+...
T Consensus 474 ---~~~I~v~d~dg~~~~~l~~-----~~~~~P~giavDp~~g~ly~td~~~~~~I~~~~~dG~~~~~l~~~-------- 537 (699)
T 1n7d_A 474 ---LGTVSVADTKGVKRKTLFR-----EQGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLVTE-------- 537 (699)
T ss_dssp ---TSCEEEEBSSSCCEEEECC-----CSSCCCCCEECCSSSSCCEECCCSSSCCEEBCCSSSCCCCEESCS--------
T ss_pred ---CCeEEEEecCCCceEEEEe-----CCCCCcceEEEccCCCcEEEcccCCCCeEEEEeCCCCCeeEEEeC--------
Confidence 4578899987544432221 12467999999996 6899999876 8999999998754333221
Q ss_pred cCccccCeEEEccCc-eEEEEeCCCCeEEEEeCCCCCCccceeEEEEecCCCCCCCCeEEEeCCCeEEEEeCCc--eEEE
Q 020019 198 KNLVGLNGIVYHPDG-FLIVIHTFSGNLFKIDIVDGVGEGEEIKLIRVAGGPLSFGDGLELLSPTKLVVAGNPS--ARLV 274 (332)
Q Consensus 198 ~~~~~~nGi~~~~dG-~Lyva~~~~~~i~~id~~~~~~~~~~~~~v~~~g~~~~~pdGi~~~~dG~l~va~~~~--~~~v 274 (332)
.+..|+||++++++ +|||++...++|+++++++. ..+.+......+..|+||+++.+ .||+++... +..+
T Consensus 538 -~l~~PnGlavd~~~~~LY~aD~~~~~I~~~d~dG~-----~~~~~~~~~~~~~~P~glavd~~-~lywtd~~~~~V~~~ 610 (699)
T 1n7d_A 538 -NIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGG-----NRKTILEDEKRLAHPFSLAVFED-KVFWTDIINEAIFSA 610 (699)
T ss_dssp -SCSSCCCEEECTTTCCEEEEETTTTEEEEECSSSS-----CCEEECCCSSSCSSCCCCEEETT-EEEEECSTTTCEEEE
T ss_pred -CCCCccEEEEeccCCEEEEEecCCCeEEEEccCCC-----ceEEEEecCCcCCCceEeEEECC-EEEEEeCCCCeEEEE
Confidence 23568999999886 99999999999999999853 23333222134678999999975 899998543 3323
Q ss_pred EcCCCceEEEEEeeecCCCcccceEEEE
Q 020019 275 ESSDGWETAAVVAKFSGPVHRLATAATV 302 (332)
Q Consensus 275 ~~~dg~~~~~~~~~~~~~~~~~pt~va~ 302 (332)
...+| +..+.+..+ +..|+++++
T Consensus 611 d~~~G----~~~~~i~~~-~~~P~~i~v 633 (699)
T 1n7d_A 611 NRLTG----SDVNLLAEN-LLSPEDMVL 633 (699)
T ss_dssp ETTTE----EEEECCCTT-CSSCCCCCB
T ss_pred EccCC----CceEEeecC-CCCCcEEEE
Confidence 33445 444444332 556777776
|
| >3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=99.75 E-value=3.9e-16 Score=149.16 Aligned_cols=202 Identities=10% Similarity=0.025 Sum_probs=138.7
Q ss_pred CCccccceEEcCCCC-EEEEEecCC----eEEEEECCCCCCCccceeeeEEecccCcCCCccceEEEeCCCCeEEEEEeC
Q 020019 43 SSFFRECAKWDDSGR-RFIVSFLDG----GIGQVAVPDDYPPGTVLEEVTLVKDLELTGNGSLGLVLDHPRNRLLVVAAD 117 (332)
Q Consensus 43 ~~~~pegia~d~~g~-~~~~~~~~g----~I~~vd~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~vd~~~g~l~v~~~~ 117 (332)
....|.+++++++|+ +|+++...+ .++.++.++ .+ .....+. .+ .+|.++++++++|+||+++..
T Consensus 177 ~~~~P~~ia~d~~G~~lyvad~~~~~~~~~v~~~~~~g-~~----~~~~~l~---~~--~~p~giavdp~~g~lyv~d~~ 246 (430)
T 3tc9_A 177 GLSKVRTICWTHEADSMIITNDQNNNDRPNNYILTRES-GF----KVITELT---KG--QNCNGAETHPINGELYFNSWN 246 (430)
T ss_dssp CCSCEEEEEECTTSSEEEEEECCSCTTSEEEEEEEGGG-TS----CSEEEEE---EC--SSCCCEEECTTTCCEEEEETT
T ss_pred CCCCcceEEEeCCCCEEEEEeCCCCcccceEEEEeCCC-ce----eeeeeec---cC--CCceEEEEeCCCCEEEEEECC
Confidence 344799999999999 677665332 577787653 32 1111221 12 379999999955999999874
Q ss_pred cCCCccceEEEEECCCCcEEEEEecCCCCCCCCCccceEECCCCc-EEEEeCCCCeEEEEcCCCc------eEEEecC--
Q 020019 118 VFGNKYSAVAAYDLSTWNRLFLTQLSGPSDGKSCADDVTVDAEGN-AYVTDVTGSKIWKVGVKGE------FLSIISS-- 188 (332)
Q Consensus 118 ~~~~~~~~l~~~d~~~g~~~~~~~l~~~~~~~~~~ndiavd~dG~-lyvtd~~~~~I~~v~~~g~------~~~~~~~-- 188 (332)
.++|++||+++++......+. ....|++++++++|+ ||++|..+++|++++.++. ...+...
T Consensus 247 -----~~~V~~~~~~~~~~~~~~~~~----~~~~P~gia~~pdG~~lyv~d~~~~~I~~~~~d~~~~~~~~~~~~ag~~g 317 (430)
T 3tc9_A 247 -----AGQVFRYDFTTQETTPLFTIQ----DSGWEFHIQFHPSGNYAYIVVVNQHYILRSDYDWKTKRLTTPYIVCGQQG 317 (430)
T ss_dssp -----TTEEEEEETTTTEEEEEEECS----SSSCCEEEEECTTSSEEEEEETTTTEEEEEEEETTTTEECCCEEEEECTT
T ss_pred -----CCEEEEEECCCCcEEEEEEcC----CCCcceeEEEcCCCCEEEEEECCCCEEEEEeCCcccccccceEEEeccCC
Confidence 468999999876654444441 136799999999998 9999999999999998753 1222221
Q ss_pred -CCCC-CcccccCccccC-eEEEc--------cCceEEEEeCCCCeEEEEeCCCCCCccceeEEEEec------C-----
Q 020019 189 -PLFT-PKEWYKNLVGLN-GIVYH--------PDGFLIVIHTFSGNLFKIDIVDGVGEGEEIKLIRVA------G----- 246 (332)
Q Consensus 189 -~~~~-~p~~~~~~~~~n-Gi~~~--------~dG~Lyva~~~~~~i~~id~~~~~~~~~~~~~v~~~------g----- 246 (332)
..+. .+.....+..|. |++++ ++|.|||++..+++|.+|+++ + .+..+... |
T Consensus 318 ~~g~~dg~~~~a~~~~P~~gv~v~~~~y~~~D~~g~lyvaD~~n~~I~~i~~~-G-----~v~~~~g~g~~~~~G~~dG~ 391 (430)
T 3tc9_A 318 AKDWVDGVGKKARMHAPRQGTFVKNPAYKGSSDEYDFYFCDRENHCIRILTPQ-G-----RVTTFAGRGSNGTSGYNDGD 391 (430)
T ss_dssp CBCCBCEEGGGCBBSSEEEEEEEECGGGTTSSCCEEEEEEEGGGTEEEEECTT-S-----EEEEEEECCTTSSSSCBCEE
T ss_pred CCCCCCCCCcceEeCCCcceEEEccccccccCCCCeEEEEECCCcEEEEECCC-C-----cEEEEEeCCCCCCCcccCCC
Confidence 1111 111122456788 89884 568999999999999999965 4 23333221 0
Q ss_pred ----CCCCCCCeEEEeC-CCeEEEEeCC
Q 020019 247 ----GPLSFGDGLELLS-PTKLVVAGNP 269 (332)
Q Consensus 247 ----~~~~~pdGi~~~~-dG~l~va~~~ 269 (332)
..+..|.||++++ +|.|||++..
T Consensus 392 ~~~~~~~~~P~giavd~~~g~lyVaD~~ 419 (430)
T 3tc9_A 392 LRQEARFNHPEGIVYDEERECFFIGDRE 419 (430)
T ss_dssp TTTTCBCSSEEEEEEETTTTEEEEEEGG
T ss_pred chhhcEeCCCcEEEEECCCCEEEEEECC
Confidence 1256799999999 6999999843
|
| >3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} PDB: 4dg6_A* | Back alignment and structure |
|---|
Probab=99.75 E-value=2.4e-16 Score=157.12 Aligned_cols=198 Identities=17% Similarity=0.131 Sum_probs=137.3
Q ss_pred cccceEEcCC-CCEEEEEecCCeEEEEECCCCCCCccceeeeEEecccCcCCCccceEEEeCCCCeEEEEEeCcCCCccc
Q 020019 46 FRECAKWDDS-GRRFIVSFLDGGIGQVAVPDDYPPGTVLEEVTLVKDLELTGNGSLGLVLDHPRNRLLVVAADVFGNKYS 124 (332)
Q Consensus 46 ~pegia~d~~-g~~~~~~~~~g~I~~vd~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~vd~~~g~l~v~~~~~~~~~~~ 124 (332)
.|.+++++++ +++|+++...++|+++++++... .+ .+.. .++ ..|.||++|..+++||+++.. .+
T Consensus 41 ~~~~ld~~~~~~~ly~sD~~~~~I~r~~~~g~~~----~~--~v~~-~~~--~~P~GlAvD~~~~~ly~~d~~-----~~ 106 (619)
T 3s94_A 41 DAAAVDFVFSHGLIYWSDVSEEAIKRTEFNKTES----VQ--NVVV-SGL--LSPDGLACDWLGEKLYWTDSE-----TN 106 (619)
T ss_dssp CEEEEEEETTTTEEEEEETTTTEEEEEEC---------CE--EEEC-SSC--SCEEEEEEETTTTEEEEEETT-----TT
T ss_pred ceEEEEEEeCCCEEEEEECCCCeEEEEEccCCCc----eE--EEEe-CCC--CCcCeEEEEecCCEEEEEeCC-----CC
Confidence 7899999985 55677778889999999875431 12 2332 222 379999999976999999863 46
Q ss_pred eEEEEECCCCcEEEEEecCCCCCCCCCccceEECCC-CcEEEEeCC-CCeEEEEcCCCceEEEecCCCCCCcccccCccc
Q 020019 125 AVAAYDLSTWNRLFLTQLSGPSDGKSCADDVTVDAE-GNAYVTDVT-GSKIWKVGVKGEFLSIISSPLFTPKEWYKNLVG 202 (332)
Q Consensus 125 ~l~~~d~~~g~~~~~~~l~~~~~~~~~~ndiavd~d-G~lyvtd~~-~~~I~~v~~~g~~~~~~~~~~~~~p~~~~~~~~ 202 (332)
.|.+++++......... .....|++|++||. |.||+||++ .++|++.+++|+....+... ....
T Consensus 107 ~I~v~~~dG~~~~~l~~-----~~l~~P~~Iavdp~~g~ly~tD~g~~~~I~r~~~dG~~~~~l~~~---------~~~~ 172 (619)
T 3s94_A 107 RIEVSNLDGSLRKVLFW-----QELDQPRAIALDPSSGFMYWTDWGEVPKIERAGMDGSSRFIIINS---------EIYW 172 (619)
T ss_dssp EEEEEETTSCSCEEEEC-----SSCSCCCCEEEETTTTEEEEEECSSSCEEEEEETTSCSCEEEECS---------SCSS
T ss_pred EEEEEECCCCCEEEEEe-----CCCCCCceEEEecCCCeEEEeccCCCCEEEEEECCCCceEEEEeC---------CCCC
Confidence 78999987544332221 12467999999996 789999987 67999999998754433222 2356
Q ss_pred cCeEEEccCc-eEEEEeCCCCeEEEEeCCCCCCccceeEEEEecCCCCCCCCeEEEeCCCeEEEEeCC--ceEEEEcCCC
Q 020019 203 LNGIVYHPDG-FLIVIHTFSGNLFKIDIVDGVGEGEEIKLIRVAGGPLSFGDGLELLSPTKLVVAGNP--SARLVESSDG 279 (332)
Q Consensus 203 ~nGi~~~~dG-~Lyva~~~~~~i~~id~~~~~~~~~~~~~v~~~g~~~~~pdGi~~~~dG~l~va~~~--~~~~v~~~dg 279 (332)
|+||++++++ +|||++...++|+++++++. ..+.+. . ..+..|.||+++.+ +||+++.. .+..+....|
T Consensus 173 P~Glald~~~~~LY~aD~~~~~I~~~~~dG~-----~~~~~~-~-~~~~~P~gi~~~~~-~ly~td~~~~~V~~~d~~tg 244 (619)
T 3s94_A 173 PNGLTLDYEEQKLYWADAKLNFIHKSNLDGT-----NRQAVV-K-GSLPHPFALTLFED-ILYWTDWSTHSILACNKYTG 244 (619)
T ss_dssp EEEEEEETTTTEEEEEETTTCCEEEESSSCC-----EEC-----------CCCEEESSS-EEEEECTTTCSEEEEESSSC
T ss_pred CcEEEEEccCCEEEEEeCCCCeEEEecCCCC-----ccEEEE-e-CCCCCceEEEEeCC-EEEEecCCCCEEEEEECCCC
Confidence 8999999875 99999999999999999854 222222 2 24578999999976 99999843 3444444455
|
| >3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B | Back alignment and structure |
|---|
Probab=99.75 E-value=3e-16 Score=144.12 Aligned_cols=214 Identities=14% Similarity=0.107 Sum_probs=147.5
Q ss_pred CCeEEEEECCCCCCCccceeeeEEecccCcCCCccceEEEeCCCCeEEEEEeCcCCCccceEEEEECCCCcE-EEEEecC
Q 020019 65 DGGIGQVAVPDDYPPGTVLEEVTLVKDLELTGNGSLGLVLDHPRNRLLVVAADVFGNKYSAVAAYDLSTWNR-LFLTQLS 143 (332)
Q Consensus 65 ~g~I~~vd~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~vd~~~g~l~v~~~~~~~~~~~~l~~~d~~~g~~-~~~~~l~ 143 (332)
...|.++++++... +...... +. ..+.+|.+|+.+++||+++.. ..+|.+++++++.. .....
T Consensus 12 ~~~I~~i~l~~~~~-----~~~~~~~--~~--~~~~~ld~d~~~~~lyw~D~~-----~~~I~r~~~~g~~~~~~~~~-- 75 (318)
T 3sov_A 12 RRDLRLVDATNGKE-----NATIVVG--GL--EDAAAVDFVFSHGLIYWSDVS-----EEAIKRTEFNKTESVQNVVV-- 75 (318)
T ss_dssp EEEEEEEETTCTTS-----CCEEEEE--EE--EEEEEEEEEGGGTEEEEEETT-----TTEEEEEETTSSSCCCEEEE--
T ss_pred cCeEEEEECCCCce-----EEEEEec--CC--CccEEEEEEeCCCEEEEEECC-----CCcEEEEEccCCCceEEEEc--
Confidence 36799999986531 1001221 22 257899999867999999863 46799999876532 11111
Q ss_pred CCCCCCCCccceEECC-CCcEEEEeCCCCeEEEEcCCCceEEEecCCCCCCcccccCccccCeEEEccCc-eEEEEeCC-
Q 020019 144 GPSDGKSCADDVTVDA-EGNAYVTDVTGSKIWKVGVKGEFLSIISSPLFTPKEWYKNLVGLNGIVYHPDG-FLIVIHTF- 220 (332)
Q Consensus 144 ~~~~~~~~~ndiavd~-dG~lyvtd~~~~~I~~v~~~g~~~~~~~~~~~~~p~~~~~~~~~nGi~~~~dG-~Lyva~~~- 220 (332)
.+...|.++++|+ +|+||++|...++|.+++++|+....+... .+..|+||+++|.+ .||+++..
T Consensus 76 ---~~l~~p~glavd~~~g~ly~~d~~~~~I~~~~~dG~~~~~l~~~---------~~~~P~giavdp~~g~ly~td~~~ 143 (318)
T 3sov_A 76 ---SGLLSPDGLACDWLGEKLYWTDSETNRIEVSNLDGSLRKVLFWQ---------ELDQPRAIALDPSSGFMYWTDWGE 143 (318)
T ss_dssp ---ECCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECS---------SCSSEEEEEEEGGGTEEEEEECSS
T ss_pred ---CCCCCccEEEEEcCCCeEEEEECCCCEEEEEECCCCcEEEEEeC---------CCCCccEEEEeCCCCEEEEEecCC
Confidence 1235789999997 578999999999999999998754433222 23468899999865 99999975
Q ss_pred CCeEEEEeCCCCCCccceeEEEEecCCCCCCCCeEEEeC-CCeEEEEeCCceE-EEEcCCCceEEEEEeeecCCCcccce
Q 020019 221 SGNLFKIDIVDGVGEGEEIKLIRVAGGPLSFGDGLELLS-PTKLVVAGNPSAR-LVESSDGWETAAVVAKFSGPVHRLAT 298 (332)
Q Consensus 221 ~~~i~~id~~~~~~~~~~~~~v~~~g~~~~~pdGi~~~~-dG~l~va~~~~~~-~v~~~dg~~~~~~~~~~~~~~~~~pt 298 (332)
.++|+|+++++. ..+.+. . ..+..|.||++|+ +++||+++....+ .....+|.....+.. ..+..|.
T Consensus 144 ~~~I~r~~~dG~-----~~~~~~-~-~~l~~Pnglavd~~~~~lY~aD~~~~~I~~~d~dG~~~~~~~~----~~~~~P~ 212 (318)
T 3sov_A 144 VPKIERAGMDGS-----SRFIII-N-SEIYWPNGLTLDYEEQKLYWADAKLNFIHKSNLDGTNRQAVVK----GSLPHPF 212 (318)
T ss_dssp SCEEEEEETTSC-----SCEEEE-C-SSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEEC----SCCSCEE
T ss_pred CCEEEEEEcCCC-----CeEEEE-E-CCCCCccEEEEeccCCEEEEEECCCCEEEEEcCCCCceEEEec----CCCCCce
Confidence 689999999853 233232 2 2567899999997 5899999854322 234456622222322 2477899
Q ss_pred EEEEECCeEEEEEecCccc
Q 020019 299 AATVKDGRVYLNHMLGFGY 317 (332)
Q Consensus 299 ~va~~~g~lyv~~~~g~~~ 317 (332)
++++.++.||++.+....+
T Consensus 213 glav~~~~lywtd~~~~~V 231 (318)
T 3sov_A 213 ALTLFEDILYWTDWSTHSI 231 (318)
T ss_dssp EEEEETTEEEEEETTTTEE
T ss_pred EEEEeCCEEEEEecCCCeE
Confidence 9999889999987655443
|
| >2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413} | Back alignment and structure |
|---|
Probab=99.74 E-value=2.9e-16 Score=145.20 Aligned_cols=206 Identities=17% Similarity=0.107 Sum_probs=139.9
Q ss_pred ccccceEEcCCCCEEEEEec-----CCeEEEEECCCCCCCccceeeeEEecccC---cCCCccceEEEeCCCCeEEEEEe
Q 020019 45 FFRECAKWDDSGRRFIVSFL-----DGGIGQVAVPDDYPPGTVLEEVTLVKDLE---LTGNGSLGLVLDHPRNRLLVVAA 116 (332)
Q Consensus 45 ~~pegia~d~~g~~~~~~~~-----~g~I~~vd~~~~~~~~~~~~~~~~~~~~~---~~~~~~~gi~vd~~~g~l~v~~~ 116 (332)
..|.++++|++|++|+++.. .++|+++|+.+++. .. .+. .+. .....+++|+++++++++|+++.
T Consensus 67 ~~p~gv~~d~~g~L~v~D~g~~~~~~~~i~~~d~~tg~~----~~--~~~-~~~~~~~~~~~~~~v~vd~~~g~~yvtd~ 139 (343)
T 2qe8_A 67 DTVLGIKSDGNGIVWMLDNGNQSKSVPKLVAWDTLNNQL----SR--VIY-LPPPITLSNSFVNDLAVDLIHNFVYISDP 139 (343)
T ss_dssp SCEEEEEECSSSEEEEEECHHHHTSCCEEEEEETTTTEE----EE--EEE-CCTTTSCTTCCCCEEEEETTTTEEEEEEC
T ss_pred eEeeEEEEcCCCcEEEEcCCCCcCCCCeEEEEECCCCeE----EE--EEE-CChhhcccccccceEEEecCCCEEEEEcC
Confidence 38999999999999998854 58999999887652 22 221 111 11235799999976689999986
Q ss_pred CcCCCccceEEEEECCCCcEEEEEecC-C--CC------CC---------------CCCccceEECCCCc-EEEEeCCCC
Q 020019 117 DVFGNKYSAVAAYDLSTWNRLFLTQLS-G--PS------DG---------------KSCADDVTVDAEGN-AYVTDVTGS 171 (332)
Q Consensus 117 ~~~~~~~~~l~~~d~~~g~~~~~~~l~-~--~~------~~---------------~~~~ndiavd~dG~-lyvtd~~~~ 171 (332)
... ....|.+||+++++......-. . +. .+ ...+|+|++++||+ +|+++....
T Consensus 140 ~~~--~~~~i~v~d~~~g~~~r~~~~~~~~~~~~~~~~~~g~~~~~~~~~g~~~~~~~~~~gia~s~dg~~ly~~~~~~~ 217 (343)
T 2qe8_A 140 APD--DKAALIRVDLQTGLAARVLQGYPGIAPEDIDLVIDGVPVQIGQPDGTVIRPHLGVNGIVLDAENEWLYLSPMHST 217 (343)
T ss_dssp CSG--GGCEEEEEETTTCCEEEECTTCTTTSCCSCCCEETTEECBEECTTSCEECCCCCEEEEEECTTSCEEEEEESSCS
T ss_pred ccC--CCCeEEEEECCCCCEEEEecCCCcccccccceeECCEEEEeccCCCceeceecccceeEeccCCCEEEEEeCCCC
Confidence 210 1357899999888765433110 0 00 00 12479999999985 999999888
Q ss_pred eEEEEcCC----CceE--EEecCCCCCCcccccCccccCeEEEccCceEEEEeCCCCeEEEEeCCCCCCccceeEEEEec
Q 020019 172 KIWKVGVK----GEFL--SIISSPLFTPKEWYKNLVGLNGIVYHPDGFLIVIHTFSGNLFKIDIVDGVGEGEEIKLIRVA 245 (332)
Q Consensus 172 ~I~~v~~~----g~~~--~~~~~~~~~~p~~~~~~~~~nGi~~~~dG~Lyva~~~~~~i~~id~~~~~~~~~~~~~v~~~ 245 (332)
.||+++.+ +... .+. ..+.. ......|+||+++++|.||+++..+++|.+++++++ ....+...
T Consensus 218 ~l~~~~~~~~~~~~~~~~~~~--~~~~~---~g~~g~pdgia~d~~G~l~va~~~~~~V~~~d~~~G-----~~~~~~~~ 287 (343)
T 2qe8_A 218 SMYRIKSADLSNLQLTDAELG--SKIER---YSEKPICDGISIDKDHNIYVGDLAHSAIGVITSADR-----AYKLLVTD 287 (343)
T ss_dssp EEEEEEHHHHTCTTCCHHHHH--TTCEE---EEECCSCSCEEECTTCCEEEEEGGGTEEEEEETTTT-----EEEEEEEC
T ss_pred eEEEEEHHHhcCCCCChhhhh--cceEe---cccCCCCceEEECCCCCEEEEccCCCeEEEEECCCC-----CEEEEEEC
Confidence 99999853 1110 000 00000 001236899999999999999999999999999545 23333222
Q ss_pred CCCCCCCCeEEEeCCCeEEEEeCCc
Q 020019 246 GGPLSFGDGLELLSPTKLVVAGNPS 270 (332)
Q Consensus 246 g~~~~~pdGi~~~~dG~l~va~~~~ 270 (332)
..+..|++++++++|+|||+++..
T Consensus 288 -~~~~~p~~va~~~~g~l~v~~~~~ 311 (343)
T 2qe8_A 288 -EKLSWTDSFNFGSDGYLYFDCNQL 311 (343)
T ss_dssp -GGGSCEEEEEECTTSCEEEEECCG
T ss_pred -CceecCCeeEECCCCcEEEEeCcc
Confidence 135789999999999999998654
|
| >3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A* | Back alignment and structure |
|---|
Probab=99.74 E-value=4.9e-15 Score=135.42 Aligned_cols=234 Identities=15% Similarity=0.164 Sum_probs=155.5
Q ss_pred CccccceEEcCCCCEEEEE-ec------CCeEEEEECCCCCCCccceeeeEEecccCcCCCccceEEEeCCCCeEEEEEe
Q 020019 44 SFFRECAKWDDSGRRFIVS-FL------DGGIGQVAVPDDYPPGTVLEEVTLVKDLELTGNGSLGLVLDHPRNRLLVVAA 116 (332)
Q Consensus 44 ~~~pegia~d~~g~~~~~~-~~------~g~I~~vd~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~vd~~~g~l~v~~~ 116 (332)
+..|.+++++++|+.+|+. .. +++|+++|..+++. .. .+. . +..+.+++++++.+++|+++.
T Consensus 40 ~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~v~~~d~~~~~~----~~--~~~-~----~~~~~~~~~s~dg~~l~v~~~ 108 (353)
T 3vgz_A 40 GKGAYEMAYSQQENALWLATSQSRKLDKGGVVYRLDPVTLEV----TQ--AIH-N----DLKPFGATINNTTQTLWFGNT 108 (353)
T ss_dssp ESSEEEEEEETTTTEEEEEECCCTTTEESEEEEEECTTTCCE----EE--EEE-E----SSCCCSEEEETTTTEEEEEET
T ss_pred ccCccceEECCCCCEEEEEcCCCcCCCCCccEEEEcCCCCeE----EE--EEe-c----CCCcceEEECCCCCEEEEEec
Confidence 3468899999999766554 33 56899999887752 12 221 1 125889999997455888876
Q ss_pred CcCCCccceEEEEECCCCcEEEEEecCCCCC---C-CCCccceEECCCCc-EEEEeC-CCCeEEEEcCC-CceEEEecCC
Q 020019 117 DVFGNKYSAVAAYDLSTWNRLFLTQLSGPSD---G-KSCADDVTVDAEGN-AYVTDV-TGSKIWKVGVK-GEFLSIISSP 189 (332)
Q Consensus 117 ~~~~~~~~~l~~~d~~~g~~~~~~~l~~~~~---~-~~~~ndiavd~dG~-lyvtd~-~~~~I~~v~~~-g~~~~~~~~~ 189 (332)
. .+.|.+||+++++....+.+..... . ...|++++++++|+ +|+++. ..+.|+++|.+ ++....+...
T Consensus 109 ~-----~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~i~~~d~~~~~~~~~~~~~ 183 (353)
T 3vgz_A 109 V-----NSAVTAIDAKTGEVKGRLVLDDRKRTEEVRPLQPRELVADDATNTVYISGIGKESVIWVVDGGNIKLKTAIQNT 183 (353)
T ss_dssp T-----TTEEEEEETTTCCEEEEEESCCCCCCSSCCCCEEEEEEEETTTTEEEEEEESSSCEEEEEETTTTEEEEEECCC
T ss_pred C-----CCEEEEEeCCCCeeEEEEecCCCccccccCCCCCceEEECCCCCEEEEEecCCCceEEEEcCCCCceEEEecCC
Confidence 3 3579999999999877776632110 0 12378999999986 899984 47889999987 4444333211
Q ss_pred CCCCcccccCccccCeEEEccCc-eEEEEeCCCCeEEEEeCCCCCCccceeEEEEecCC-CCCCCCeEEEeCCCe-EEEE
Q 020019 190 LFTPKEWYKNLVGLNGIVYHPDG-FLIVIHTFSGNLFKIDIVDGVGEGEEIKLIRVAGG-PLSFGDGLELLSPTK-LVVA 266 (332)
Q Consensus 190 ~~~~p~~~~~~~~~nGi~~~~dG-~Lyva~~~~~~i~~id~~~~~~~~~~~~~v~~~g~-~~~~pdGi~~~~dG~-l~va 266 (332)
...++++++++|| .||+++. +++|+.+|+.++ +....+..... +...+.+++++++|+ +|++
T Consensus 184 ----------~~~~~~~~~s~dg~~l~~~~~-~~~i~~~d~~~~----~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~ 248 (353)
T 3vgz_A 184 ----------GKMSTGLALDSEGKRLYTTNA-DGELITIDTADN----KILSRKKLLDDGKEHFFINISLDTARQRAFIT 248 (353)
T ss_dssp ----------CTTCCCCEEETTTTEEEEECT-TSEEEEEETTTT----EEEEEEECCCSSSCCCEEEEEEETTTTEEEEE
T ss_pred ----------CCccceEEECCCCCEEEEEcC-CCeEEEEECCCC----eEEEEEEcCCCCCCcccceEEECCCCCEEEEE
Confidence 1247899999999 8999876 778999999877 24444554321 234577899999976 8888
Q ss_pred eCC--ceEEEEcCCCceEEEEEeeecCCCcccceEEEE-E-CCeEEEEEecCc
Q 020019 267 GNP--SARLVESSDGWETAAVVAKFSGPVHRLATAATV-K-DGRVYLNHMLGF 315 (332)
Q Consensus 267 ~~~--~~~~v~~~dg~~~~~~~~~~~~~~~~~pt~va~-~-~g~lyv~~~~g~ 315 (332)
+.. ...++...++ ++...+..+ .|.++++ . ++++|+++..+.
T Consensus 249 ~~~~~~v~~~d~~~~----~~~~~~~~~---~~~~~~~s~dg~~l~v~~~~~~ 294 (353)
T 3vgz_A 249 DSKAAEVLVVDTRNG----NILAKVAAP---ESLAVLFNPARNEAYVTHRQAG 294 (353)
T ss_dssp ESSSSEEEEEETTTC----CEEEEEECS---SCCCEEEETTTTEEEEEETTTT
T ss_pred eCCCCEEEEEECCCC----cEEEEEEcC---CCceEEECCCCCEEEEEECCCC
Confidence 743 3344455555 233333322 2456777 3 456888765443
|
| >3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A* | Back alignment and structure |
|---|
Probab=99.74 E-value=3.6e-14 Score=129.62 Aligned_cols=237 Identities=12% Similarity=0.085 Sum_probs=160.8
Q ss_pred ccccceEEcCCCC-EEEEEecCCeEEEEECCCCCCCccceeeeEEecccCc-----CCCccceEEEeCCCCeEEEEEeCc
Q 020019 45 FFRECAKWDDSGR-RFIVSFLDGGIGQVAVPDDYPPGTVLEEVTLVKDLEL-----TGNGSLGLVLDHPRNRLLVVAADV 118 (332)
Q Consensus 45 ~~pegia~d~~g~-~~~~~~~~g~I~~vd~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~gi~vd~~~g~l~v~~~~~ 118 (332)
..|.+++++++|+ +|+++..++.|+.+|..+++. .. .+...... ....+.+++++++.+++|++...
T Consensus 89 ~~~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~~~----~~--~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~- 161 (353)
T 3vgz_A 89 LKPFGATINNTTQTLWFGNTVNSAVTAIDAKTGEV----KG--RLVLDDRKRTEEVRPLQPRELVADDATNTVYISGIG- 161 (353)
T ss_dssp SCCCSEEEETTTTEEEEEETTTTEEEEEETTTCCE----EE--EEESCCCCCCSSCCCCEEEEEEEETTTTEEEEEEES-
T ss_pred CCcceEEECCCCCEEEEEecCCCEEEEEeCCCCee----EE--EEecCCCccccccCCCCCceEEECCCCCEEEEEecC-
Confidence 3588999999998 555556678999999987762 12 22111000 00147899999985678888743
Q ss_pred CCCccceEEEEECCCCcEEEEEecCCCCCCCCCccceEECCCCc-EEEEeCCCCeEEEEcCC-CceEEEecCCCCCCccc
Q 020019 119 FGNKYSAVAAYDLSTWNRLFLTQLSGPSDGKSCADDVTVDAEGN-AYVTDVTGSKIWKVGVK-GEFLSIISSPLFTPKEW 196 (332)
Q Consensus 119 ~~~~~~~l~~~d~~~g~~~~~~~l~~~~~~~~~~ndiavd~dG~-lyvtd~~~~~I~~v~~~-g~~~~~~~~~~~~~p~~ 196 (332)
..+.|++||+++++....+... ...+++++++++|+ +|+++. .+.|+.+|.. ++.......... .
T Consensus 162 ---~~~~i~~~d~~~~~~~~~~~~~-----~~~~~~~~~s~dg~~l~~~~~-~~~i~~~d~~~~~~~~~~~~~~~-~--- 228 (353)
T 3vgz_A 162 ---KESVIWVVDGGNIKLKTAIQNT-----GKMSTGLALDSEGKRLYTTNA-DGELITIDTADNKILSRKKLLDD-G--- 228 (353)
T ss_dssp ---SSCEEEEEETTTTEEEEEECCC-----CTTCCCCEEETTTTEEEEECT-TSEEEEEETTTTEEEEEEECCCS-S---
T ss_pred ---CCceEEEEcCCCCceEEEecCC-----CCccceEEECCCCCEEEEEcC-CCeEEEEECCCCeEEEEEEcCCC-C---
Confidence 1357999999998877655421 24588999999986 777765 7899999976 444433322111 0
Q ss_pred ccCccccCeEEEccCc-eEEEEeCCCCeEEEEeCCCCCCccceeEEEEecCCCCCCCCeEEEeCCCe-EEEEeCC--ceE
Q 020019 197 YKNLVGLNGIVYHPDG-FLIVIHTFSGNLFKIDIVDGVGEGEEIKLIRVAGGPLSFGDGLELLSPTK-LVVAGNP--SAR 272 (332)
Q Consensus 197 ~~~~~~~nGi~~~~dG-~Lyva~~~~~~i~~id~~~~~~~~~~~~~v~~~g~~~~~pdGi~~~~dG~-l~va~~~--~~~ 272 (332)
....+.+++++||| .||+++...++|+.+|+.+++ .+..+..+ .|.+++++++|+ +|+++.. ...
T Consensus 229 --~~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~----~~~~~~~~-----~~~~~~~s~dg~~l~v~~~~~~~v~ 297 (353)
T 3vgz_A 229 --KEHFFINISLDTARQRAFITDSKAAEVLVVDTRNGN----ILAKVAAP-----ESLAVLFNPARNEAYVTHRQAGKVS 297 (353)
T ss_dssp --SCCCEEEEEEETTTTEEEEEESSSSEEEEEETTTCC----EEEEEECS-----SCCCEEEETTTTEEEEEETTTTEEE
T ss_pred --CCcccceEEECCCCCEEEEEeCCCCEEEEEECCCCc----EEEEEEcC-----CCceEEECCCCCEEEEEECCCCeEE
Confidence 12346789999999 899999999999999998773 45555543 357899999987 8998743 334
Q ss_pred EEEcCCCceEEEEEeeecCCCcccceEEEE-E-CCeEEEEEecCcccc
Q 020019 273 LVESSDGWETAAVVAKFSGPVHRLATAATV-K-DGRVYLNHMLGFGYP 318 (332)
Q Consensus 273 ~v~~~dg~~~~~~~~~~~~~~~~~pt~va~-~-~g~lyv~~~~g~~~~ 318 (332)
++...++ ++...+..+ ..|.++++ . ++.|||++..+....
T Consensus 298 ~~d~~~~----~~~~~~~~~--~~~~~~~~s~dg~~l~v~~~~~~~~~ 339 (353)
T 3vgz_A 298 VIDAKSY----KVVKTFDTP--THPNSLALSADGKTLYVSVKQKSTKQ 339 (353)
T ss_dssp EEETTTT----EEEEEEECC--SEEEEEEECTTSCEEEEEEECCCBTT
T ss_pred EEECCCC----eEEEEEecC--CCCCeEEEcCCCCEEEEEEccccccc
Confidence 4455556 344444332 36889999 4 456999888765443
|
| >3kya_A Putative phosphatase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE; 1.77A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=99.72 E-value=1.1e-15 Score=147.29 Aligned_cols=209 Identities=10% Similarity=0.041 Sum_probs=141.3
Q ss_pred cccceEE-------cCCCC-EEEEEecC------CeEEEEECCC-CCCCccceeeeEEecccCcCCCccceEEEeCCCCe
Q 020019 46 FRECAKW-------DDSGR-RFIVSFLD------GGIGQVAVPD-DYPPGTVLEEVTLVKDLELTGNGSLGLVLDHPRNR 110 (332)
Q Consensus 46 ~pegia~-------d~~g~-~~~~~~~~------g~I~~vd~~~-~~~~~~~~~~~~~~~~~~~~~~~~~gi~vd~~~g~ 110 (332)
.|.+|++ +++|+ +|+++... ..|++++... +++... .....+. .+ .+|+|+++++++++
T Consensus 187 ~p~~ia~~~~~~~~d~~G~~lyvad~~~~~~~~~~~V~~i~r~~~G~~~~~-~~~~~v~---~~--~~p~giavdp~~g~ 260 (496)
T 3kya_A 187 RIRSIAFNKKIEGYADEAEYMIVAIDYDGKGDESPSVYIIKRNADGTFDDR-SDIQLIA---AY--KQCNGATIHPINGE 260 (496)
T ss_dssp BEEEEEECCCBTTTBCTTCEEEEEECCCTTGGGEEEEEEEECCTTSCCSTT-SCEEEEE---EE--SCCCCEEECTTTCC
T ss_pred CCcEEEEeecccccCCCCCEEEEEeCCCCCcccCceEEEEecCCCCceeec-ccceeec---cC--CCceEEEEcCCCCe
Confidence 5899999 99998 66666443 2488887554 232100 0000121 22 37899999997799
Q ss_pred EEEEEeCcCCCccceEEEEECC-------CCcE------------EEEEecCCCCCCCCCccceEECCCCc-EEEEeCCC
Q 020019 111 LLVVAADVFGNKYSAVAAYDLS-------TWNR------------LFLTQLSGPSDGKSCADDVTVDAEGN-AYVTDVTG 170 (332)
Q Consensus 111 l~v~~~~~~~~~~~~l~~~d~~-------~g~~------------~~~~~l~~~~~~~~~~ndiavd~dG~-lyvtd~~~ 170 (332)
||+++.. .++|++||++ +++. .....+. ....|.+|+++|+|+ +||+|+.+
T Consensus 261 LYvtd~~-----~g~V~r~d~~~~~~~~~tg~~~tp~~~~~~g~~~~l~~~~----~~~~p~~ia~~p~G~~lYvaD~~~ 331 (496)
T 3kya_A 261 LYFNSYE-----KGQVFRLDLVDYFKTIKNGGSWDPIVKNNPNTFKQLFTIA----DPSWEFQIFIHPTGKYAYFGVINN 331 (496)
T ss_dssp EEEEETT-----TTEEEEECHHHHHHHHHTTCCCCCBGGGCTTTEEEEEECS----SSSCCEEEEECTTSSEEEEEETTT
T ss_pred EEEEECC-----CCEEEEEecccccccccCceeecccccccccccceeEecC----CCCCceEEEEcCCCCEEEEEeCCC
Confidence 9999873 4679999997 5554 1223331 246789999999998 89999999
Q ss_pred CeEEEEcCCCce------EEEecC---CCCC-CcccccCccccC-eEEEc-------cCceEEEEeCCCCeEEEEeCCCC
Q 020019 171 SKIWKVGVKGEF------LSIISS---PLFT-PKEWYKNLVGLN-GIVYH-------PDGFLIVIHTFSGNLFKIDIVDG 232 (332)
Q Consensus 171 ~~I~~v~~~g~~------~~~~~~---~~~~-~p~~~~~~~~~n-Gi~~~-------~dG~Lyva~~~~~~i~~id~~~~ 232 (332)
++|++++.++.. ..+... ..+. .+.....+..|. |++++ ++|.|||+++.+++|.+|+++ +
T Consensus 332 h~I~kid~dg~~~~~~~~~~~aG~~g~~G~~DG~~~~a~f~~P~~gv~vd~~~~~~~~~g~lyVaD~~N~rIr~i~~~-G 410 (496)
T 3kya_A 332 HYFMRSDYDEIKKEFITPYNFVGGYKQSGYRDDVGTEARMNNPCQGVFVKNPDYTGEEEYDFYFVDRLNFCVRKVTPE-G 410 (496)
T ss_dssp TEEEEEEEETTTTEECCCEEEEEBTTBCCCBCCBGGGCBCSSEEEEEEEECTTCCSSCCEEEEEEEGGGTEEEEECTT-C
T ss_pred CEEEEEecCCCcceecccEEecCCCCCCcccCCcccccccCCCeEEEEEccccccccCCCeEEEEECCCCEEEEEeCC-C
Confidence 999998877532 233332 1111 122233566799 88887 678999999999999999965 4
Q ss_pred CCccceeEEEEec------------C---------CCCCCCCeEEEeCC-CeEEEEe--CCceEEEE
Q 020019 233 VGEGEEIKLIRVA------------G---------GPLSFGDGLELLSP-TKLVVAG--NPSARLVE 275 (332)
Q Consensus 233 ~~~~~~~~~v~~~------------g---------~~~~~pdGi~~~~d-G~l~va~--~~~~~~v~ 275 (332)
.+..+.-. | ..+..|.||+++++ |+|||++ |+.+|.+.
T Consensus 411 -----~v~TiaG~g~~~~~~~~~~~G~~dG~~~~~a~f~~P~gIavd~~~g~lyVaD~~N~rIrki~ 472 (496)
T 3kya_A 411 -----IVSTYAGRGASTSLADGNQWGTDDGDLREVARFRDVSGLVYDDVKEMFYVHDQVGHTIRTIS 472 (496)
T ss_dssp -----BEEEEEESCTTHHHHHSCSCCCCCEETTTTCCCSSEEEEEEETTTTEEEEEETTTTEEEEEE
T ss_pred -----CEEEEecccccccccCccccccCCCCchhhhhcCCCcEEEEECCCCEEEEEeCCCCEEEEEE
Confidence 34444321 1 13567999999997 9999998 44455443
|
| >3das_A Putative oxidoreductase; aldose sugar dehydrogenase, beta propellor, PQQ, SGDH; HET: MSE ARA PQQ; 1.60A {Streptomyces coelicolor} | Back alignment and structure |
|---|
Probab=99.72 E-value=1e-14 Score=134.80 Aligned_cols=263 Identities=12% Similarity=0.043 Sum_probs=161.6
Q ss_pred eEEEecCCc-cccceEEcCCCCEEEEEecCCeEEEEECCCCCCCccceeeeEEecccCc--C-CCccceEEEeCC---CC
Q 020019 37 VYHYHSSSF-FRECAKWDDSGRRFIVSFLDGGIGQVAVPDDYPPGTVLEEVTLVKDLEL--T-GNGSLGLVLDHP---RN 109 (332)
Q Consensus 37 ~i~~~~~~~-~pegia~d~~g~~~~~~~~~g~I~~vd~~~~~~~~~~~~~~~~~~~~~~--~-~~~~~gi~vd~~---~g 109 (332)
.++....++ .|.++++.++|++|++....|+|+++++++++. + .+..-|.. . ..+++||+++|+ ++
T Consensus 23 ~~~~va~gL~~P~~ia~~pdG~llVter~~G~I~~v~~~~g~~-----~--~v~~~~~v~~~g~~GllGia~~Pdf~~~g 95 (347)
T 3das_A 23 VLRTVATGLNSPWGLAPLPGGDLLVSSRDEATITRVDAKTGRK-----T--ELGEVPGVSPSGEGGLLGIALSPDYASDH 95 (347)
T ss_dssp EEEEEECCCSSEEEEEECTTSCEEEEETTTCEEEEECTTTCCE-----E--EEEECTTCCCBTTBSEEEEEECTTHHHHC
T ss_pred eeEEeecCCCCceEEEEcCCCcEEEEEecCCEEEEEECCCCcE-----e--eecccCceeecCCCCceeeEeccccccCC
Confidence 455555666 999999999999988887689999998765542 1 12111211 1 247899999984 58
Q ss_pred eEEEEEeCcCCCccceEEEEECCCC--------cEEE-EEecCCCCCCCCCccceEECCCCcEEEEe-------------
Q 020019 110 RLLVVAADVFGNKYSAVAAYDLSTW--------NRLF-LTQLSGPSDGKSCADDVTVDAEGNAYVTD------------- 167 (332)
Q Consensus 110 ~l~v~~~~~~~~~~~~l~~~d~~~g--------~~~~-~~~l~~~~~~~~~~ndiavd~dG~lyvtd------------- 167 (332)
.||++.... ..++|.+|....+ +... ...++ ....++.+.|++++||.|||+.
T Consensus 96 ~lYv~yt~~---~~~~v~R~~~~~~~~~~~~~~~~~~i~~~~p--~~~~H~g~~l~fgpDG~Lyvt~Gd~~~~~~~qd~~ 170 (347)
T 3das_A 96 MVYAYFTSA---SDNRIVRMLYDEKKPSGEQLGAPDTVFRGIP--KGVIHNGGRIAFGPDKMLYAGTGESGDTGLSQDRK 170 (347)
T ss_dssp EEEEEEECS---SSEEEEEEEBCTTSCTTCCBCCCEEEEEEEC--CCSSCCCCCEEECTTSCEEEECBCTTCGGGTTCTT
T ss_pred EEEEEEecC---CCCEEEEEEeCCCCcccccCCCcEEEEEcCC--CCCCccCccccCCCCCCEEEEECCCCCCccccCCC
Confidence 999986532 2357888876542 1222 22343 2335788999999999999984
Q ss_pred CCCCeEEEEcCCCceEEEecCCCCC-CcccccCccccCeEEEccCceEEEEeCCCC---eEEEEeCCCCCC-----ccc-
Q 020019 168 VTGSKIWKVGVKGEFLSIISSPLFT-PKEWYKNLVGLNGIVYHPDGFLIVIHTFSG---NLFKIDIVDGVG-----EGE- 237 (332)
Q Consensus 168 ~~~~~I~~v~~~g~~~~~~~~~~~~-~p~~~~~~~~~nGi~~~~dG~Lyva~~~~~---~i~~id~~~~~~-----~~~- 237 (332)
...++|+|++++|+... .+ .|. ......++.+|.||+++++|.||+++.... .|.++... +.. .+.
T Consensus 171 ~~~G~IlRi~~dG~ip~--~n-Pf~~~~i~a~G~RNp~Gla~dp~G~L~~~d~g~~~~deln~i~~G-~nyGwP~~~g~~ 246 (347)
T 3das_A 171 SLGGKILRMTPDGEPAP--GN-PFPGSPVYSYGHRNVQGLAWDDKQRLFASEFGQDTWDELNAIKPG-DNYGWPEAEGKG 246 (347)
T ss_dssp CSTTCEEEECTTSSBCT--TC-SSTTCCEEEBCCSBCCEEEECTTCCEEEEECCSSSCEEEEEECTT-CBCCTTTCCSSC
T ss_pred CCCCEEEEEeCCCCccC--CC-CCCCCeEEeeCCCCcceEEECCCCCEEEEecCCCCCceeeEEcCC-CEecCCcccCCC
Confidence 24689999999987321 11 121 112233566899999999999999998653 46666432 110 000
Q ss_pred ----ee-EEEEecCCCCCCCCeEEEeCCCeEEEEeCC--ceEEEEcCCCceEEEEEeeecCCCcccceEEEE-ECCeEEE
Q 020019 238 ----EI-KLIRVAGGPLSFGDGLELLSPTKLVVAGNP--SARLVESSDGWETAAVVAKFSGPVHRLATAATV-KDGRVYL 309 (332)
Q Consensus 238 ----~~-~~v~~~g~~~~~pdGi~~~~dG~l~va~~~--~~~~v~~~dg~~~~~~~~~~~~~~~~~pt~va~-~~g~lyv 309 (332)
.+ ..+... .....|.||++. +|.+|++... ..+.+....+....+....+. .....|..|++ .+|.|||
T Consensus 247 ~~~~~~~P~~~~~-~~~~ap~G~~~~-~g~~~~~~l~~~~l~~v~~~~~~~~~~~e~~l~-~~~gR~~dv~~~pDG~lyv 323 (347)
T 3das_A 247 GGSGFHDPVAQWS-TDEASPSGIAYA-EGSVWMAGLRGERLWRIPLKGTAAAADPQAFLE-GEYGRLRTVAPAGGDKLWL 323 (347)
T ss_dssp CCTTCCCCSEEEC-TTTCCEEEEEEE-TTEEEEEESTTCSEEEEEEETTEESSCCEEEST-TTSSCEEEEEEEETTEEEE
T ss_pred CCccccCCcEecC-CCCCCCcceEEE-cCceeeccccCCEEEEEEecCCceecceEEeec-CCCCCccEEEECCCCcEEE
Confidence 00 001111 112468899998 4899999743 333333322201111111222 23456889999 8999999
Q ss_pred E--EecCcccc
Q 020019 310 N--HMLGFGYP 318 (332)
Q Consensus 310 ~--~~~g~~~~ 318 (332)
+ +.-|...|
T Consensus 324 ~td~~~g~g~p 334 (347)
T 3das_A 324 VTSNTDGRGDA 334 (347)
T ss_dssp EECTTSSSSCC
T ss_pred EEcCCCCCCCC
Confidence 4 34444445
|
| >4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A* | Back alignment and structure |
|---|
Probab=99.71 E-value=4.9e-15 Score=147.85 Aligned_cols=214 Identities=12% Similarity=0.111 Sum_probs=151.8
Q ss_pred cCCeEEEEECCCCCCCccceeeeEEecccCcCCCccceEEEeCCCCeEEEEEeCcCCCccceEEEEECCCCcEEEEEecC
Q 020019 64 LDGGIGQVAVPDDYPPGTVLEEVTLVKDLELTGNGSLGLVLDHPRNRLLVVAADVFGNKYSAVAAYDLSTWNRLFLTQLS 143 (332)
Q Consensus 64 ~~g~I~~vd~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~vd~~~g~l~v~~~~~~~~~~~~l~~~d~~~g~~~~~~~l~ 143 (332)
....|.+++.++... + ..+.-++. ..|.||++|+.+++||+++.. .++|.+++++.......+..
T Consensus 13 ~~~~I~~i~l~~~~~-----~--~~~~~~~~--~~~~~l~~d~~~~~lywtD~~-----~~~I~r~~~~g~~~~~v~~~- 77 (628)
T 4a0p_A 13 RRADIRRISLETNNN-----N--VAIPLTGV--KEASALDFDVTDNRIYWTDIS-----LKTISRAFMNGSALEHVVEF- 77 (628)
T ss_dssp ETTEEEEEESSCTTC-----E--EECCCCSC--SCEEEEEEETTTTEEEEEETT-----TTEEEEEETTSCSCEEEECS-
T ss_pred eCCcEEEEECCCCCc-----c--eEEEcCCC--CceEEEEEECCCCEEEEEECC-----CCeEEEEECCCCCcEEEEeC-
Confidence 467899999986542 1 22222232 378999999988999999873 46799999876554433322
Q ss_pred CCCCCCCCccceEECCC-CcEEEEeCCCCeEEEEcCCCceEEEecCCCCCCcccccCccccCeEEEccC-ceEEEEeCC-
Q 020019 144 GPSDGKSCADDVTVDAE-GNAYVTDVTGSKIWKVGVKGEFLSIISSPLFTPKEWYKNLVGLNGIVYHPD-GFLIVIHTF- 220 (332)
Q Consensus 144 ~~~~~~~~~ndiavd~d-G~lyvtd~~~~~I~~v~~~g~~~~~~~~~~~~~p~~~~~~~~~nGi~~~~d-G~Lyva~~~- 220 (332)
+...|.|+|+|.. |+||++|+..++|.+++.+|+....+... .+..|++|+++|. |.||++++.
T Consensus 78 ----g~~~P~GlAvD~~~~~LY~tD~~~~~I~v~~~dG~~~~~l~~~---------~l~~P~~iavdp~~G~lY~tD~g~ 144 (628)
T 4a0p_A 78 ----GLDYPEGMAVDWLGKNLYWADTGTNRIEVSKLDGQHRQVLVWK---------DLDSPRALALDPAEGFMYWTEWGG 144 (628)
T ss_dssp ----SCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSTTCEEEECS---------SCCCEEEEEEETTTTEEEEEECSS
T ss_pred ----CCCCcceEEEEeCCCEEEEEECCCCEEEEEecCCCcEEEEEeC---------CCCCcccEEEccCCCeEEEeCCCC
Confidence 2467999999976 68999999999999999998754433222 2346889999985 699999986
Q ss_pred CCeEEEEeCCCCCCccceeEEEEecCCCCCCCCeEEEeCC-CeEEEEeCCceE-EEEcCCCceEEEEEeeecCCCcccce
Q 020019 221 SGNLFKIDIVDGVGEGEEIKLIRVAGGPLSFGDGLELLSP-TKLVVAGNPSAR-LVESSDGWETAAVVAKFSGPVHRLAT 298 (332)
Q Consensus 221 ~~~i~~id~~~~~~~~~~~~~v~~~g~~~~~pdGi~~~~d-G~l~va~~~~~~-~v~~~dg~~~~~~~~~~~~~~~~~pt 298 (332)
.++|+|+++++. ..+.+. . .+..|.||++|++ ++||+++..... .....+|... ++... .+..|.
T Consensus 145 ~~~I~r~~~dG~-----~~~~l~-~--~~~~P~GlalD~~~~~LY~aD~~~~~I~~~d~dG~~~-~v~~~----~l~~P~ 211 (628)
T 4a0p_A 145 KPKIDRAAMDGS-----ERTTLV-P--NVGRANGLTIDYAKRRLYWTDLDTNLIESSNMLGLNR-EVIAD----DLPHPF 211 (628)
T ss_dssp SCEEEEEETTSC-----SCEEEE-C--SCSSEEEEEEETTTTEEEEEETTTTEEEEEETTSCSC-EEEEE----CCSCEE
T ss_pred CCEEEEEeCCCC-----ceEEEE-C--CCCCcceEEEccccCEEEEEECCCCEEEEEcCCCCce-EEeec----cCCCce
Confidence 789999999854 233332 2 4678999999985 899999854322 2344455222 33322 367799
Q ss_pred EEEEECCeEEEEEecCcccc
Q 020019 299 AATVKDGRVYLNHMLGFGYP 318 (332)
Q Consensus 299 ~va~~~g~lyv~~~~g~~~~ 318 (332)
++++.+++||++++....+.
T Consensus 212 glav~~~~ly~tD~~~~~I~ 231 (628)
T 4a0p_A 212 GLTQYQDYIYWTDWSRRSIE 231 (628)
T ss_dssp EEEEETTEEEEEETTTTEEE
T ss_pred EEEEECCEEEEecCCCCEEE
Confidence 99998899999887655543
|
| >3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.71 E-value=6.3e-15 Score=150.28 Aligned_cols=216 Identities=14% Similarity=0.115 Sum_probs=147.6
Q ss_pred CCeEEEEECCCCCCCccceeeeEEecccCcCCCccceEEEeCCCCeEEEEEeCcCCCccceEEEEECCCCcE--EEEEec
Q 020019 65 DGGIGQVAVPDDYPPGTVLEEVTLVKDLELTGNGSLGLVLDHPRNRLLVVAADVFGNKYSAVAAYDLSTWNR--LFLTQL 142 (332)
Q Consensus 65 ~g~I~~vd~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~vd~~~g~l~v~~~~~~~~~~~~l~~~d~~~g~~--~~~~~l 142 (332)
...|.+++.+...+ . .+.. .+ ..+.||++|..+++||+++.. ..+|++++++.... .....+
T Consensus 403 ~~~Ir~i~l~~~~~-----~--~l~~--~~--~~~~gl~~d~~~~~lY~sD~~-----~~~I~~~~l~g~~~~~~~~~vi 466 (791)
T 3m0c_C 403 RHEVRKMTLDRSEY-----T--SLIP--NL--RNVVALDTEVASNRIYWSDLS-----QRMICSTQLDRAHGVSSYDTVI 466 (791)
T ss_dssp BSSEEEECTTSCCC-----E--EEEC--SC--SSEEEEEEETTTTEEEEEETT-----TTEEEEEEC--------CEEEE
T ss_pred ccceeEeeccCCcc-----e--eeec--CC--CceEEEeecccCCeeEEeecc-----ceeEEEEeccCCCCCcceeEEE
Confidence 35789998875543 1 2332 22 378999999877999999874 45788888864221 111112
Q ss_pred CCCCCCCCCccceEECCCC-cEEEEeCCCCeEEEEcCCCceEEEecCCCCCCcccccCccccCeEEEccC-ceEEEEeCC
Q 020019 143 SGPSDGKSCADDVTVDAEG-NAYVTDVTGSKIWKVGVKGEFLSIISSPLFTPKEWYKNLVGLNGIVYHPD-GFLIVIHTF 220 (332)
Q Consensus 143 ~~~~~~~~~~ndiavd~dG-~lyvtd~~~~~I~~v~~~g~~~~~~~~~~~~~p~~~~~~~~~nGi~~~~d-G~Lyva~~~ 220 (332)
......|.+||+|..+ +||++|+..++|++++.+|+....+.... +..|+||++++. |+|||+++.
T Consensus 467 ---~~~l~~P~GLAvD~~~~~LY~tD~~~~~I~v~~ldG~~~~~l~~~~---------l~~P~gIaVDp~~g~LYwtD~g 534 (791)
T 3m0c_C 467 ---SRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFREN---------GSKPRAIVVDPVHGFMYWTDWG 534 (791)
T ss_dssp ---CSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSSSEEEEEECT---------TCCEEEEEEETTTTEEEEEECS
T ss_pred ---ecCCCCcceeeeeecCCcEEEEecCCCeEEEEeCCCCeEEEEEeCC---------CCCcceEEEecCCCCEEEecCC
Confidence 1124689999999875 89999999999999999988655443222 345789999997 599999988
Q ss_pred C-CeEEEEeCCCCCCccceeEEEEecCCCCCCCCeEEEe-CCCeEEEEeCCce-EEEEcCCCceEEEEEeeecCCCcccc
Q 020019 221 S-GNLFKIDIVDGVGEGEEIKLIRVAGGPLSFGDGLELL-SPTKLVVAGNPSA-RLVESSDGWETAAVVAKFSGPVHRLA 297 (332)
Q Consensus 221 ~-~~i~~id~~~~~~~~~~~~~v~~~g~~~~~pdGi~~~-~dG~l~va~~~~~-~~v~~~dg~~~~~~~~~~~~~~~~~p 297 (332)
. ++|+++++++. ..+.+. . ..+..|.||++| .+++||+++.... ..+...+|.....+... ...+..|
T Consensus 535 ~~~~I~~~~~dG~-----~~~~lv-~-~~l~~P~GLavD~~~~~LYwaD~~~~~I~~~d~dG~~~~~v~~~--~~~l~~P 605 (791)
T 3m0c_C 535 TPAKIKKGGLNGV-----DIYSLV-T-ENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRKTILED--EKRLAHP 605 (791)
T ss_dssp SSCEEEEEETTSC-----CEEEEE-C-SSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEEEC--TTTTSSE
T ss_pred CCCeEEEEecCCC-----ceEEEE-e-CCCCCceEEEEecCCCeEEEEeCCCCcEEEEecCCCceEEEecC--CCccCCC
Confidence 6 89999999854 233332 2 356789999999 4699999985432 22344566333333322 1246778
Q ss_pred eEEEEECCeEEEEEecCccc
Q 020019 298 TAATVKDGRVYLNHMLGFGY 317 (332)
Q Consensus 298 t~va~~~g~lyv~~~~g~~~ 317 (332)
.++++.+++||++++....+
T Consensus 606 ~glav~~~~lYwtD~~~~~I 625 (791)
T 3m0c_C 606 FSLAVFEDKVFWTDIINEAI 625 (791)
T ss_dssp EEEEEETTEEEEEETTTTEE
T ss_pred CEEEEeCCEEEEEECCCCEE
Confidence 88999899999987665544
|
| >2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A* | Back alignment and structure |
|---|
Probab=99.70 E-value=1.6e-15 Score=138.80 Aligned_cols=191 Identities=13% Similarity=0.094 Sum_probs=135.3
Q ss_pred cccceEEcC-CCCEEEEEecCCeEEEEECCCCCCCccceeeeEEecc-cCcCCCccceEEEeC-CCCeEEEEEeCcC---
Q 020019 46 FRECAKWDD-SGRRFIVSFLDGGIGQVAVPDDYPPGTVLEEVTLVKD-LELTGNGSLGLVLDH-PRNRLLVVAADVF--- 119 (332)
Q Consensus 46 ~pegia~d~-~g~~~~~~~~~g~I~~vd~~~~~~~~~~~~~~~~~~~-~~~~~~~~~gi~vd~-~~g~l~v~~~~~~--- 119 (332)
.|.++++++ +|++|+++.. +.|+++++++++. + .+... .+.....|++|++++ + |++|+++....
T Consensus 81 ~p~gi~~~~~~g~l~v~d~~-~~i~~~d~~~g~~-----~--~~~~~~~~~~~~~p~~i~~d~~~-G~l~v~d~~~~~~~ 151 (322)
T 2fp8_A 81 RTYDISYNLQNNQLYIVDCY-YHLSVVGSEGGHA-----T--QLATSVDGVPFKWLYAVTVDQRT-GIVYFTDVSTLYDD 151 (322)
T ss_dssp CEEEEEEETTTTEEEEEETT-TEEEEECTTCEEC-----E--EEESEETTEECSCEEEEEECTTT-CCEEEEESCSSCCT
T ss_pred CCceEEEcCCCCcEEEEECC-CCEEEEeCCCCEE-----E--EecccCCCCcccccceEEEecCC-CEEEEECCcccccc
Confidence 588999997 8888888754 4599999875542 1 22211 111113689999999 6 99999986410
Q ss_pred ---------CCccceEEEEECCCCcEEEEEecCCCCCCCCCccceEECCCCc-EEEEeCCCCeEEEEcCCCc----eEEE
Q 020019 120 ---------GNKYSAVAAYDLSTWNRLFLTQLSGPSDGKSCADDVTVDAEGN-AYVTDVTGSKIWKVGVKGE----FLSI 185 (332)
Q Consensus 120 ---------~~~~~~l~~~d~~~g~~~~~~~l~~~~~~~~~~ndiavd~dG~-lyvtd~~~~~I~~v~~~g~----~~~~ 185 (332)
....+.|++||+++++...... ....||+++++++|+ +||+|+..++|++++.++. ...+
T Consensus 152 ~~~~~~~~~~~~~g~v~~~d~~~~~~~~~~~------~~~~p~gia~~~dg~~lyv~d~~~~~I~~~~~~~~~~~~~~~~ 225 (322)
T 2fp8_A 152 RGVQQIMDTSDKTGRLIKYDPSTKETTLLLK------ELHVPGGAEVSADSSFVLVAEFLSHQIVKYWLEGPKKGTAEVL 225 (322)
T ss_dssp TCHHHHHHHTCCCEEEEEEETTTTEEEEEEE------EESCCCEEEECTTSSEEEEEEGGGTEEEEEESSSTTTTCEEEE
T ss_pred cccceehcccCCCceEEEEeCCCCEEEEecc------CCccCcceEECCCCCEEEEEeCCCCeEEEEECCCCcCCccceE
Confidence 0123679999998777543321 135789999999986 9999999999999998752 2222
Q ss_pred ecCCCCCCcccccCccccCeEEEccCceEEEEeCC----------CCeEEEEeCCCCCCccceeEEEEec-CCCCCCCCe
Q 020019 186 ISSPLFTPKEWYKNLVGLNGIVYHPDGFLIVIHTF----------SGNLFKIDIVDGVGEGEEIKLIRVA-GGPLSFGDG 254 (332)
Q Consensus 186 ~~~~~~~~p~~~~~~~~~nGi~~~~dG~Lyva~~~----------~~~i~~id~~~~~~~~~~~~~v~~~-g~~~~~pdG 254 (332)
.. . .+|+||+++++|+|||++.. .++|++++++.. .+..+..+ |..+..|.+
T Consensus 226 ~~---~---------~gP~gi~~d~~G~l~va~~~~~~~~~~~~~~~~v~~~d~~G~-----~~~~~~~~~g~~~~~~~~ 288 (322)
T 2fp8_A 226 VK---I---------PNPGNIKRNADGHFWVSSSEELDGNMHGRVDPKGIKFDEFGN-----ILEVIPLPPPFAGEHFEQ 288 (322)
T ss_dssp EE---C---------SSEEEEEECTTSCEEEEEEEETTSSTTSCEEEEEEEECTTSC-----EEEEEECCTTTTTSCCCE
T ss_pred Ee---C---------CCCCCeEECCCCCEEEEecCcccccccCCCccEEEEECCCCC-----EEEEEECCCCCccccceE
Confidence 11 1 12899999999999999976 578999998733 55556654 222567888
Q ss_pred EEEeCCCeEEEEeCC
Q 020019 255 LELLSPTKLVVAGNP 269 (332)
Q Consensus 255 i~~~~dG~l~va~~~ 269 (332)
++.+ +|+|||++..
T Consensus 289 ~~~~-~g~L~v~~~~ 302 (322)
T 2fp8_A 289 IQEH-DGLLYIGTLF 302 (322)
T ss_dssp EEEE-TTEEEEECSS
T ss_pred EEEe-CCEEEEeecC
Confidence 8774 7999999743
|
| >2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A* | Back alignment and structure |
|---|
Probab=99.69 E-value=1.1e-14 Score=129.67 Aligned_cols=191 Identities=16% Similarity=0.137 Sum_probs=135.3
Q ss_pred ccccceEEcCCCCEEEEEe--cCCeEEEEECCCCCCCccceeeeEEecccCcCCCccceEEEeCCCCeEEEEEeCcCCCc
Q 020019 45 FFRECAKWDDSGRRFIVSF--LDGGIGQVAVPDDYPPGTVLEEVTLVKDLELTGNGSLGLVLDHPRNRLLVVAADVFGNK 122 (332)
Q Consensus 45 ~~pegia~d~~g~~~~~~~--~~g~I~~vd~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~vd~~~g~l~v~~~~~~~~~ 122 (332)
.+|+|++++++|.+|+++- ..++|.++|+.+++ +.. ++. -+. ...+.|++++. ++||+++..
T Consensus 21 ~f~~Gl~~~~dg~Lyvstg~~~~s~v~~iD~~tg~----v~~--~i~-l~~--~~fgeGi~~~g--~~lyv~t~~----- 84 (266)
T 2iwa_A 21 AFTQGLVYAENDTLFESTGLYGRSSVRQVALQTGK----VEN--IHK-MDD--SYFGEGLTLLN--EKLYQVVWL----- 84 (266)
T ss_dssp CCEEEEEECSTTEEEEEECSTTTCEEEEEETTTCC----EEE--EEE-CCT--TCCEEEEEEET--TEEEEEETT-----
T ss_pred CCcccEEEeCCCeEEEECCCCCCCEEEEEECCCCC----EEE--EEe-cCC--CcceEEEEEeC--CEEEEEEec-----
Confidence 3789999999988887762 36899999999887 223 221 111 11445788874 799999863
Q ss_pred cceEEEEECCCCcEEEEEecCCCCCCCCCccceEECCCC-cEEEEeCCCCeEEEEcCCC-ceEEEecCCCCCCcccccCc
Q 020019 123 YSAVAAYDLSTWNRLFLTQLSGPSDGKSCADDVTVDAEG-NAYVTDVTGSKIWKVGVKG-EFLSIISSPLFTPKEWYKNL 200 (332)
Q Consensus 123 ~~~l~~~d~~~g~~~~~~~l~~~~~~~~~~ndiavd~dG-~lyvtd~~~~~I~~v~~~g-~~~~~~~~~~~~~p~~~~~~ 200 (332)
.+.+.+||.+++++...+... .+.+..+.+|| .+|+++ +.+.|+.+|++. +....+....... ..
T Consensus 85 ~~~v~viD~~t~~v~~~i~~g-------~~~g~glt~Dg~~l~vs~-gs~~l~viD~~t~~v~~~I~Vg~~~~-----p~ 151 (266)
T 2iwa_A 85 KNIGFIYDRRTLSNIKNFTHQ-------MKDGWGLATDGKILYGSD-GTSILYEIDPHTFKLIKKHNVKYNGH-----RV 151 (266)
T ss_dssp CSEEEEEETTTTEEEEEEECC-------SSSCCEEEECSSSEEEEC-SSSEEEEECTTTCCEEEEEECEETTE-----EC
T ss_pred CCEEEEEECCCCcEEEEEECC-------CCCeEEEEECCCEEEEEC-CCCeEEEEECCCCcEEEEEEECCCCc-----cc
Confidence 467999999999887766552 12345555565 699999 689999999985 4333322111011 12
Q ss_pred cccCeEEEccCceEEEEeCCCCeEEEEeCCCCCCccceeEEEEecC----------CCCCCCCeEEEeCC-CeEEEEeCC
Q 020019 201 VGLNGIVYHPDGFLIVIHTFSGNLFKIDIVDGVGEGEEIKLIRVAG----------GPLSFGDGLELLSP-TKLVVAGNP 269 (332)
Q Consensus 201 ~~~nGi~~~~dG~Lyva~~~~~~i~~id~~~~~~~~~~~~~v~~~g----------~~~~~pdGi~~~~d-G~l~va~~~ 269 (332)
..+|++++. ||+||++.+.++.|.+||+.+++ .+..+.+++ .....|.||+++++ .++||++..
T Consensus 152 ~~~nele~~-dg~lyvn~~~~~~V~vID~~tg~----V~~~I~~~g~~~~~~~~~~~~~~v~nGIa~~~~~~~lfVTgk~ 226 (266)
T 2iwa_A 152 IRLNELEYI-NGEVWANIWQTDCIARISAKDGT----LLGWILLPNLRKKLIDEGFRDIDVLNGIAWDQENKRIFVTGKL 226 (266)
T ss_dssp CCEEEEEEE-TTEEEEEETTSSEEEEEETTTCC----EEEEEECHHHHHHHHHTTCTTCCCEEEEEEETTTTEEEEEETT
T ss_pred ccceeEEEE-CCEEEEecCCCCeEEEEECCCCc----EEEEEECCCcccccccccccccCceEEEEEcCCCCEEEEECCC
Confidence 358999998 88999999999999999999883 567777642 01246789999998 479999844
|
| >3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B | Back alignment and structure |
|---|
Probab=99.69 E-value=6e-15 Score=133.43 Aligned_cols=193 Identities=10% Similarity=0.032 Sum_probs=136.9
Q ss_pred ccccceEEcCCCCEEEEEecCCeEEEEECCCCCCCccceeeeEEecc-cCcCCCccceEEEeCCCCeEEEEEeCcCC---
Q 020019 45 FFRECAKWDDSGRRFIVSFLDGGIGQVAVPDDYPPGTVLEEVTLVKD-LELTGNGSLGLVLDHPRNRLLVVAADVFG--- 120 (332)
Q Consensus 45 ~~pegia~d~~g~~~~~~~~~g~I~~vd~~~~~~~~~~~~~~~~~~~-~~~~~~~~~gi~vd~~~g~l~v~~~~~~~--- 120 (332)
..|.+++++++|++|++. .+.|+++++++++. + .+... .+...+.++++++|++ |++|+++.....
T Consensus 54 ~~~~~i~~~~dG~l~v~~--~~~l~~~d~~~g~~-----~--~~~~~~~~~~~~~~~di~~d~d-G~l~~~~~~~~~~~~ 123 (297)
T 3g4e_A 54 APVSSVALRQSGGYVATI--GTKFCALNWKEQSA-----V--VLATVDNDKKNNRFNDGKVDPA-GRYFAGTMAEETAPA 123 (297)
T ss_dssp SCEEEEEEBTTSSEEEEE--TTEEEEEETTTTEE-----E--EEEECCTTCSSEEEEEEEECTT-SCEEEEEEECCSBTT
T ss_pred CceEEEEECCCCCEEEEE--CCeEEEEECCCCcE-----E--EEEecCCCCCCCCCCCEEECCC-CCEEEecCCcccccc
Confidence 468899999999977765 57899999886652 2 22221 1112246899999996 999998754210
Q ss_pred ---CccceEEEEECCCCcEEEEEecCCCCCCCCCccceEECCCCc-EEEEeCCCCeEEEEcC---CCceE--E-EecCCC
Q 020019 121 ---NKYSAVAAYDLSTWNRLFLTQLSGPSDGKSCADDVTVDAEGN-AYVTDVTGSKIWKVGV---KGEFL--S-IISSPL 190 (332)
Q Consensus 121 ---~~~~~l~~~d~~~g~~~~~~~l~~~~~~~~~~ndiavd~dG~-lyvtd~~~~~I~~v~~---~g~~~--~-~~~~~~ 190 (332)
...+.|+++|.+ ++...... ....||++++++||+ +|++++..+.|++++. +|+.. + +.....
T Consensus 124 ~~~~~~~~l~~~d~~-g~~~~~~~------~~~~pngi~~spdg~~lyv~~~~~~~i~~~~~d~~~G~~~~~~~~~~~~~ 196 (297)
T 3g4e_A 124 VLERHQGALYSLFPD-HHVKKYFD------QVDISNGLDWSLDHKIFYYIDSLSYSVDAFDYDLQTGQISNRRSVYKLEK 196 (297)
T ss_dssp BCCTTCEEEEEECTT-SCEEEEEE------EESBEEEEEECTTSCEEEEEEGGGTEEEEEEECTTTCCEEEEEEEEECCG
T ss_pred cccCCCcEEEEEECC-CCEEEEee------ccccccceEEcCCCCEEEEecCCCCcEEEEeccCCCCcccCcEEEEECCC
Confidence 124578889875 45443221 135789999999985 9999999999999874 45532 1 111110
Q ss_pred CCCcccccCccccCeEEEccCceEEEEeCCCCeEEEEeCCCCCCccceeEEEEecCCCCCCCCeEEEe-CC-CeEEEEeC
Q 020019 191 FTPKEWYKNLVGLNGIVYHPDGFLIVIHTFSGNLFKIDIVDGVGEGEEIKLIRVAGGPLSFGDGLELL-SP-TKLVVAGN 268 (332)
Q Consensus 191 ~~~p~~~~~~~~~nGi~~~~dG~Lyva~~~~~~i~~id~~~~~~~~~~~~~v~~~g~~~~~pdGi~~~-~d-G~l~va~~ 268 (332)
....|+|++++++|+||+++..+++|+++++++++ .+..+..+ ...|..+++. +| ++|||+..
T Consensus 197 --------~~~~p~g~~~d~~G~lwva~~~~~~v~~~d~~tG~----~~~~i~~p---~~~~t~~~f~g~d~~~L~vt~~ 261 (297)
T 3g4e_A 197 --------EEQIPDGMCIDAEGKLWVACYNGGRVIRLDPVTGK----RLQTVKLP---VDKTTSCCFGGKNYSEMYVTCA 261 (297)
T ss_dssp --------GGCEEEEEEEBTTSCEEEEEETTTEEEEECTTTCC----EEEEEECS---SSBEEEEEEESGGGCEEEEEEB
T ss_pred --------CCCCCCeeEECCCCCEEEEEcCCCEEEEEcCCCce----EEEEEECC---CCCceEEEEeCCCCCEEEEEcC
Confidence 12468999999999999999999999999998773 45666654 2568899997 66 57999975
Q ss_pred C
Q 020019 269 P 269 (332)
Q Consensus 269 ~ 269 (332)
.
T Consensus 262 ~ 262 (297)
T 3g4e_A 262 R 262 (297)
T ss_dssp C
T ss_pred C
Confidence 4
|
| >3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum} | Back alignment and structure |
|---|
Probab=99.68 E-value=2.2e-14 Score=131.56 Aligned_cols=248 Identities=11% Similarity=0.148 Sum_probs=150.9
Q ss_pred CCccccceEEcCCCCEEEEEec--CCeEEEEECCCCCCCccceeeeEEecccCcCCCccceEEEeCCCCeEEEEEeCcCC
Q 020019 43 SSFFRECAKWDDSGRRFIVSFL--DGGIGQVAVPDDYPPGTVLEEVTLVKDLELTGNGSLGLVLDHPRNRLLVVAADVFG 120 (332)
Q Consensus 43 ~~~~pegia~d~~g~~~~~~~~--~g~I~~vd~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~vd~~~g~l~v~~~~~~~ 120 (332)
....|.+++++++|++|+++.. ++.|+.++.++++. + .+......+..|.+++++++...||++...
T Consensus 38 ~~~~p~~~a~spdg~l~~~~~~~~~~~v~~~~~~~g~~-----~---~~~~~~~~~~~p~~~a~spdg~~l~~~~~~--- 106 (347)
T 3hfq_A 38 ATQNPTYLALSAKDCLYSVDKEDDEGGIAAWQIDGQTA-----H---KLNTVVAPGTPPAYVAVDEARQLVYSANYH--- 106 (347)
T ss_dssp ECSCCCCEEECTTCEEEEEEEETTEEEEEEEEEETTEE-----E---EEEEEEEESCCCSEEEEETTTTEEEEEETT---
T ss_pred ccCCcceEEEccCCeEEEEEecCCCceEEEEEecCCcE-----E---EeeeeecCCCCCEEEEECCCCCEEEEEeCC---
Confidence 3457899999999996666643 57899998865542 1 111100112378999999974457887642
Q ss_pred CccceEEEEECC-CCcEEEEEecCCCCC------CCCCccceEECCCCcEEEEeCCCCeEEEEcCC--CceEEEecCCCC
Q 020019 121 NKYSAVAAYDLS-TWNRLFLTQLSGPSD------GKSCADDVTVDAEGNAYVTDVTGSKIWKVGVK--GEFLSIISSPLF 191 (332)
Q Consensus 121 ~~~~~l~~~d~~-~g~~~~~~~l~~~~~------~~~~~ndiavd~dG~lyvtd~~~~~I~~v~~~--g~~~~~~~~~~~ 191 (332)
.+.+.+||.+ +++......+..... ....+++++++|+|++|+++...+.|+.++.+ |+........ .
T Consensus 107 --~~~v~v~~~~~~g~~~~~~~~~~~~~~p~~~~~~~~~~~~~~spdg~l~v~~~~~~~v~~~~~~~~g~~~~~~~~~-~ 183 (347)
T 3hfq_A 107 --KGTAEVMKIAADGALTLTDTVQHSGHGPRPEQDGSHIHYTDLTPDNRLAVIDLGSDKVYVYNVSDAGQLSEQSVLT-M 183 (347)
T ss_dssp --TTEEEEEEECTTSCEEEEEEEECCCCCSSTTCSSCCEEEEEECTTSCEEEEETTTTEEEEEEECTTSCEEEEEEEE-C
T ss_pred --CCEEEEEEeCCCCCeeecceeecCCCCCCccccCCCceEEEECCCCcEEEEeCCCCEEEEEEECCCCcEEEeeeEE-c
Confidence 3568888874 445443333311111 12357889999999999999998988777654 5543321100 0
Q ss_pred CCcccccCccccCeEEEccCc-eEEEEeCCCCeEEEEeCCC--CCCccceeEEEEecCCC---CCCCCeEEEeCCCe-EE
Q 020019 192 TPKEWYKNLVGLNGIVYHPDG-FLIVIHTFSGNLFKIDIVD--GVGEGEEIKLIRVAGGP---LSFGDGLELLSPTK-LV 264 (332)
Q Consensus 192 ~~p~~~~~~~~~nGi~~~~dG-~Lyva~~~~~~i~~id~~~--~~~~~~~~~~v~~~g~~---~~~pdGi~~~~dG~-l~ 264 (332)
....+|++++|+||| .||+++...++|..++++. ++. ..+..+...... ...|.++++++||+ ||
T Consensus 184 ------~~g~~p~~~~~spdg~~l~v~~~~~~~v~v~~~~~~~g~~--~~~~~~~~~~~~~~~~~~~~~i~~spdG~~l~ 255 (347)
T 3hfq_A 184 ------EAGFGPRHLVFSPDGQYAFLAGELSSQIASLKYDTQTGAF--TQLGIVKTIPADYTAHNGAAAIRLSHDGHFLY 255 (347)
T ss_dssp ------CTTCCEEEEEECTTSSEEEEEETTTTEEEEEEEETTTTEE--EEEEEEESSCTTCCSCCEEEEEEECTTSCEEE
T ss_pred ------CCCCCCceEEECCCCCEEEEEeCCCCEEEEEEecCCCCce--EEeeeeeecCCCCCCCCcceeEEECCCCCEEE
Confidence 012357899999999 7999999889887776653 411 112222211001 13478899999997 78
Q ss_pred EEeC--CceEEEEcC-CCceEEEEEeeecCCCcccceEEEE-EC-CeEEEEEecCc
Q 020019 265 VAGN--PSARLVESS-DGWETAAVVAKFSGPVHRLATAATV-KD-GRVYLNHMLGF 315 (332)
Q Consensus 265 va~~--~~~~~v~~~-dg~~~~~~~~~~~~~~~~~pt~va~-~~-g~lyv~~~~g~ 315 (332)
+++. ....+.... +| .. +....+... ...|.++++ .+ +.||+++....
T Consensus 256 v~~~~~~~v~v~~~~~~g-~~-~~~~~~~~~-~~~~~~~~~spdg~~l~v~~~~~~ 308 (347)
T 3hfq_A 256 VSNRGYNTLAVFAVTADG-HL-TLIQQISTE-GDFPRDFDLDPTEAFVVVVNQNTD 308 (347)
T ss_dssp EEEETTTEEEEEEECGGG-CE-EEEEEEECS-SSCCCEEEECTTSSEEEEEETTTT
T ss_pred EEeCCCCEEEEEEECCCC-cE-EEeEEEecC-CCCcCeEEECCCCCEEEEEEcCCC
Confidence 8864 333333332 33 22 333333321 346889999 44 46888776543
|
| >3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans} | Back alignment and structure |
|---|
Probab=99.68 E-value=3e-14 Score=128.18 Aligned_cols=201 Identities=10% Similarity=0.011 Sum_probs=140.7
Q ss_pred cCCccccceEEcCCCCEEEEEecCCeEEEEECCCCCCCccceeeeEEecc-cCcCCCccceEEEeCCCCeEEEEEeCcC-
Q 020019 42 SSSFFRECAKWDDSGRRFIVSFLDGGIGQVAVPDDYPPGTVLEEVTLVKD-LELTGNGSLGLVLDHPRNRLLVVAADVF- 119 (332)
Q Consensus 42 ~~~~~pegia~d~~g~~~~~~~~~g~I~~vd~~~~~~~~~~~~~~~~~~~-~~~~~~~~~gi~vd~~~g~l~v~~~~~~- 119 (332)
.....|.+++++++|++|++....+.|+++++.+++. + .+... .+.....+++++++++ |++|+++...+
T Consensus 66 ~~~~~~~~l~~~~dg~l~v~~~~~~~i~~~d~~~g~~-----~--~~~~~~~~~~~~~~~~i~~d~~-G~l~vtd~~~g~ 137 (296)
T 3e5z_A 66 HPSHHQNGHCLNKQGHLIACSHGLRRLERQREPGGEW-----E--SIADSFEGKKLNSPNDVCLAPD-GSLWFSDPTYGI 137 (296)
T ss_dssp SSCSSEEEEEECTTCCEEEEETTTTEEEEECSTTCCE-----E--EEECEETTEECCCCCCEEECTT-SCEEEEECSHHH
T ss_pred CCCCCcceeeECCCCcEEEEecCCCeEEEEcCCCCcE-----E--EEeeccCCCCCCCCCCEEECCC-CCEEEECCcccc
Confidence 3444789999999999988876678999999866652 1 22211 1112236889999996 99999864210
Q ss_pred -----------CCccceEEEEECCCCcEEEEEecCCCCCCCCCccceEECCCCcEEEEeCCCCeEEEEcCC--Cce---E
Q 020019 120 -----------GNKYSAVAAYDLSTWNRLFLTQLSGPSDGKSCADDVTVDAEGNAYVTDVTGSKIWKVGVK--GEF---L 183 (332)
Q Consensus 120 -----------~~~~~~l~~~d~~~g~~~~~~~l~~~~~~~~~~ndiavd~dG~lyvtd~~~~~I~~v~~~--g~~---~ 183 (332)
....+.|++++++ ++..... .....|++++++++|+++++++..+.|++++.+ |+. .
T Consensus 138 ~~~~~~~~~~~~~~~~~l~~~~~~-g~~~~~~------~~~~~~~gi~~s~dg~~lv~~~~~~~i~~~~~~~~g~~~~~~ 210 (296)
T 3e5z_A 138 DKPEEGYGGEMELPGRWVFRLAPD-GTLSAPI------RDRVKPNGLAFLPSGNLLVSDTGDNATHRYCLNARGETEYQG 210 (296)
T ss_dssp HCGGGSSCCCCCSSSCEEEEECTT-SCEEEEE------CCCSSEEEEEECTTSCEEEEETTTTEEEEEEECSSSCEEEEE
T ss_pred ccccccccccccCCCcEEEEECCC-CCEEEee------cCCCCCccEEECCCCCEEEEeCCCCeEEEEEECCCCcCcCCC
Confidence 0113478999887 6654322 124678999999999877999999999998864 554 2
Q ss_pred EEecCCCCCCcccccCccccCeEEEccCceEEEEeCCCCeEEEEeCCCCCCccceeEEEEecCCCCCCCCeEEEe-CCC-
Q 020019 184 SIISSPLFTPKEWYKNLVGLNGIVYHPDGFLIVIHTFSGNLFKIDIVDGVGEGEEIKLIRVAGGPLSFGDGLELL-SPT- 261 (332)
Q Consensus 184 ~~~~~~~~~~p~~~~~~~~~nGi~~~~dG~Lyva~~~~~~i~~id~~~~~~~~~~~~~v~~~g~~~~~pdGi~~~-~dG- 261 (332)
..+ .. ....|+||+++++|+||++. .+.|+++++++. .+..+..+. . |..++++ ++|
T Consensus 211 ~~~-~~---------~~~~p~~i~~d~~G~l~v~~--~~~v~~~~~~g~-----~~~~~~~~~---~-~~~~~f~~~d~~ 269 (296)
T 3e5z_A 211 VHF-TV---------EPGKTDGLRVDAGGLIWASA--GDGVHVLTPDGD-----ELGRVLTPQ---T-TSNLCFGGPEGR 269 (296)
T ss_dssp EEE-CC---------SSSCCCSEEEBTTSCEEEEE--TTEEEEECTTSC-----EEEEEECSS---C-CCEEEEESTTSC
T ss_pred eEe-eC---------CCCCCCeEEECCCCCEEEEc--CCeEEEECCCCC-----EEEEEECCC---C-ceeEEEECCCCC
Confidence 222 11 12457899999999999999 778999998733 555565541 3 8899995 664
Q ss_pred eEEEEeCCceEEEEcCC
Q 020019 262 KLVVAGNPSARLVESSD 278 (332)
Q Consensus 262 ~l~va~~~~~~~v~~~d 278 (332)
.||++.....+.+...+
T Consensus 270 ~L~v~t~~~l~~~~~~~ 286 (296)
T 3e5z_A 270 TLYMTVSTEFWSIETNV 286 (296)
T ss_dssp EEEEEETTEEEEEECSC
T ss_pred EEEEEcCCeEEEEEccc
Confidence 69999877655444443
|
| >3q6k_A 43.2 kDa salivary protein; beta propeller, binding protein, serotonin, salivary gland, binding, ligand binging protein; HET: CIT SRO; 2.52A {Lutzomyia longipalpis} PDB: 3q6p_A* 3q6t_A* | Back alignment and structure |
|---|
Probab=99.65 E-value=8.1e-14 Score=129.82 Aligned_cols=258 Identities=16% Similarity=0.174 Sum_probs=167.8
Q ss_pred cCCccccceEEc-CCCCEEEEEe-c-C---CeEEEEECCCC-----CCCccceeeeEE-ecccCcC-C---CccceEEEe
Q 020019 42 SSSFFRECAKWD-DSGRRFIVSF-L-D---GGIGQVAVPDD-----YPPGTVLEEVTL-VKDLELT-G---NGSLGLVLD 105 (332)
Q Consensus 42 ~~~~~pegia~d-~~g~~~~~~~-~-~---g~I~~vd~~~~-----~~~~~~~~~~~~-~~~~~~~-~---~~~~gi~vd 105 (332)
.....|-|+++| .+|++|++-. + . -+|..++.++. ..+ .+ ..-|+.. + .+++++.+|
T Consensus 23 p~n~~P~gv~vd~~~gRiFvt~PR~~~gvp~TL~~v~~~~~~~~~~~~p-------~ll~PYP~w~~~~~lvsV~~v~iD 95 (381)
T 3q6k_A 23 PDNMISTAFAYDAEGEKLFLAVPRKLPRVPYTLAEVDTKNSLGVKGKHS-------PLLNKFSGHKTGKELTSIYQPVID 95 (381)
T ss_dssp GGGCCCCEEEEETTTTEEEEECCTTSTTCSCSEEEEEHHHHTTCTTCSS-------CCBEECTTCSSSCSSSCEEEEEEC
T ss_pred cCccceeeeeeecCCCcEEEEeCCCCCCCCcEEEEEeCCCCcccccCCc-------ccccCCCCCccccceEEeeEEEEc
Confidence 344588999994 8898887763 2 2 26888875421 110 12 2223321 1 378999999
Q ss_pred CCCCeEEEEEeCcCC----------CccceEEEEECCCC--cEEEEEecCCC-CCCCCCccceEEC-C-------CCcEE
Q 020019 106 HPRNRLLVVAADVFG----------NKYSAVAAYDLSTW--NRLFLTQLSGP-SDGKSCADDVTVD-A-------EGNAY 164 (332)
Q Consensus 106 ~~~g~l~v~~~~~~~----------~~~~~l~~~d~~~g--~~~~~~~l~~~-~~~~~~~ndiavd-~-------dG~ly 164 (332)
+. |+|||.|.+... ....+|.+||++++ +++.++.++.. ....++.|++++| . ++.+|
T Consensus 96 ~~-~rLWVLDtG~~~~~~~~~~~~~~~~pkLv~~DL~t~~~~li~~y~~p~~~~~~~S~l~di~VD~~~~~~~c~~~~aY 174 (381)
T 3q6k_A 96 DC-RRLWVVDIGSVEYRSRGAKDYPSHRPAIVAYDLKQPNYPEVVRYYFPTRLVEKPTYFGGFAVDVANPKGDCSETFVY 174 (381)
T ss_dssp TT-CEEEEEECSSCSSCSTTGGGSCCCCCEEEEEESSSTTCCEEEEEECCGGGCCCGGGEEEEEEEESCTTTTSCSEEEE
T ss_pred CC-CcEEEEeCCCcCcCCCccccCCCCCceEEEEECCCCCceeEEEEECCHHhcccCCccceEEEecccCCCCCCccEEE
Confidence 95 999999976321 12358999999999 99999988532 1234789999999 2 34599
Q ss_pred EEeCCCCeEEEEcCC-CceEEEecCCCCCC-cc---c-----ccCccccCeEEEccC----c-eEEEEeCCCCeEEEEeC
Q 020019 165 VTDVTGSKIWKVGVK-GEFLSIISSPLFTP-KE---W-----YKNLVGLNGIVYHPD----G-FLIVIHTFSGNLFKIDI 229 (332)
Q Consensus 165 vtd~~~~~I~~v~~~-g~~~~~~~~~~~~~-p~---~-----~~~~~~~nGi~~~~d----G-~Lyva~~~~~~i~~id~ 229 (332)
+||+..+.|.++|.. |+.-++.+ ..+.. +. . ..-..+.+||+++|+ + +||+.-..+.++|+|+.
T Consensus 175 ItD~~~~gLIVydl~~~~swRv~~-~~~~pd~~~~~~i~G~~~~~~~Gi~gIaLsp~~~~~~~~LYf~plss~~ly~V~T 253 (381)
T 3q6k_A 175 ITNFLRGALFIYDHKKQDSWNVTH-PTFKAERPTKFDYGGKEYEFKAGIFGITLGDRDSEGNRPAYYLAGSAIKVYSVNT 253 (381)
T ss_dssp EEETTTTEEEEEETTTTEEEEEEC-GGGSCCSCEEEEETTEEEEECCCEEEEEECCCCTTSCCEEEEEESSCSEEEEEEH
T ss_pred EEcCCCCcEEEEECCCCcEEEEcc-CCCccccCcceEECCEEeEeccCceEEEecCCcCCCCeEEEEEECCCCcEEEEEH
Confidence 999999999999976 66555553 22221 11 0 011358999999998 6 99999999999999985
Q ss_pred C---CCCCccceeEEEEecCCCCCCCC--eEEEe-CCCeEEEEeCC-ceEEEEcCCC-----ceEEEEEeeecCCCcccc
Q 020019 230 V---DGVGEGEEIKLIRVAGGPLSFGD--GLELL-SPTKLVVAGNP-SARLVESSDG-----WETAAVVAKFSGPVHRLA 297 (332)
Q Consensus 230 ~---~~~~~~~~~~~v~~~g~~~~~pd--Gi~~~-~dG~l~va~~~-~~~~v~~~dg-----~~~~~~~~~~~~~~~~~p 297 (332)
+ .+... ..++.+-.. .+..+ ++++| .+|+||++.-. .......+++ .....+.. .+.+.||
T Consensus 254 ~~L~~~~~~-~~v~~~G~k---g~~s~~~~~~~D~~~G~ly~~~~~~~aI~~w~~~~~~~~~~n~~~l~~---d~~l~~p 326 (381)
T 3q6k_A 254 KELKQKGGK-LNPELLGNR---GKYNDAIALAYDPKTKVIFFAEANTKQVSCWNTQKMPLRMKNTDVVYT---SSRFVFG 326 (381)
T ss_dssp HHHSSTTCC-CCCEEEEEC---CTTCCEEEEEECTTTCEEEEEESSSSEEEEEETTSCSBCGGGEEEEEE---CTTCCSE
T ss_pred HHhhCcchh-hceEEeeec---CCCCCcceEEEeCCCCeEEEEeccCCeEEEEeCCCCccccCceEEEEE---CCCcccc
Confidence 3 33221 133333221 12245 56776 78999999733 2222333433 12233433 3579999
Q ss_pred eEEEE-ECCeEEE-EEecCc
Q 020019 298 TAATV-KDGRVYL-NHMLGF 315 (332)
Q Consensus 298 t~va~-~~g~lyv-~~~~g~ 315 (332)
+++.+ .+|.||| ++++..
T Consensus 327 d~~~i~~~g~Lwv~sn~l~~ 346 (381)
T 3q6k_A 327 TDISVDSKGGLWFMSNGFPP 346 (381)
T ss_dssp EEEEECTTSCEEEEECSCCS
T ss_pred CeEEECCCCeEEEEECcchH
Confidence 99999 7899998 666543
|
| >2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3 | Back alignment and structure |
|---|
Probab=99.65 E-value=4.8e-14 Score=128.18 Aligned_cols=194 Identities=11% Similarity=0.062 Sum_probs=131.6
Q ss_pred CccccceEEcCCCCEEEEEecC--CeEEEEECCCCCCCccceeeeEEecccCcCCCccceEEEeCCCCeEEEEEeCcCCC
Q 020019 44 SFFRECAKWDDSGRRFIVSFLD--GGIGQVAVPDDYPPGTVLEEVTLVKDLELTGNGSLGLVLDHPRNRLLVVAADVFGN 121 (332)
Q Consensus 44 ~~~pegia~d~~g~~~~~~~~~--g~I~~vd~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~vd~~~g~l~v~~~~~~~~ 121 (332)
+..|.+++++++|++|+++... .+|++++..+++. + .+...+. ...+.|+++.+. +++|+++..
T Consensus 71 ~~~p~gia~~~dG~l~vad~~~~~~~v~~~d~~~g~~-----~--~~~~~~~--~~~~~g~~~~~~-~~~~v~d~~---- 136 (306)
T 2p4o_A 71 EGKVSGLAFTSNGDLVATGWNADSIPVVSLVKSDGTV-----E--TLLTLPD--AIFLNGITPLSD-TQYLTADSY---- 136 (306)
T ss_dssp SSEEEEEEECTTSCEEEEEECTTSCEEEEEECTTSCE-----E--EEEECTT--CSCEEEEEESSS-SEEEEEETT----
T ss_pred CCCceeEEEcCCCcEEEEeccCCcceEEEEcCCCCeE-----E--EEEeCCC--ccccCcccccCC-CcEEEEECC----
Confidence 3479999999999998888443 3699998776652 2 2332222 235788888764 889998752
Q ss_pred ccceEEEEECCCCcEEEEE-e--cC--CCCCCCCCccceEECCCC-cEEEEeCCCCeEEEEcCCC--ceEEEecCCCCCC
Q 020019 122 KYSAVAAYDLSTWNRLFLT-Q--LS--GPSDGKSCADDVTVDAEG-NAYVTDVTGSKIWKVGVKG--EFLSIISSPLFTP 193 (332)
Q Consensus 122 ~~~~l~~~d~~~g~~~~~~-~--l~--~~~~~~~~~ndiavd~dG-~lyvtd~~~~~I~~v~~~g--~~~~~~~~~~~~~ 193 (332)
.+.|+++|+.+++..... . +. .+......||++ +++| .+|++|+..++|++++.++ +... ...+
T Consensus 137 -~g~i~~~d~~~~~~~v~~~~~~~~~~~~~~~~~~pngi--s~dg~~lyv~d~~~~~I~~~~~~~~g~~~~---~~~~-- 208 (306)
T 2p4o_A 137 -RGAIWLIDVVQPSGSIWLEHPMLARSNSESVFPAANGL--KRFGNFLYVSNTEKMLLLRIPVDSTDKPGE---PEIF-- 208 (306)
T ss_dssp -TTEEEEEETTTTEEEEEEECGGGSCSSTTCCSCSEEEE--EEETTEEEEEETTTTEEEEEEBCTTSCBCC---CEEE--
T ss_pred -CCeEEEEeCCCCcEeEEEECCccccccccCCCCcCCCc--CcCCCEEEEEeCCCCEEEEEEeCCCCCCCc---cEEE--
Confidence 457999998765422211 1 10 111224679998 6665 6999999999999999873 3210 0000
Q ss_pred cccccCccccCeEEEccCceEEEEeCCCCeEEEEeCCCCCCccceeEEEEecCCCCCCCCeEEEe---CC-CeEEEEeCC
Q 020019 194 KEWYKNLVGLNGIVYHPDGFLIVIHTFSGNLFKIDIVDGVGEGEEIKLIRVAGGPLSFGDGLELL---SP-TKLVVAGNP 269 (332)
Q Consensus 194 p~~~~~~~~~nGi~~~~dG~Lyva~~~~~~i~~id~~~~~~~~~~~~~v~~~g~~~~~pdGi~~~---~d-G~l~va~~~ 269 (332)
.....|+||+++++|+|||++..+++|++|+++ ++ ........ .++..|.+++++ +| +.|||++..
T Consensus 209 ----~~~~~P~gi~vd~dG~l~va~~~~~~V~~~~~~-G~----~~~~~~~~-~~~~~p~~~a~~g~~~d~~~LyVt~~~ 278 (306)
T 2p4o_A 209 ----VEQTNIDDFAFDVEGNLYGATHIYNSVVRIAPD-RS----TTIIAQAE-QGVIGSTAVAFGQTEGDCTAIYVVTNG 278 (306)
T ss_dssp ----EESCCCSSEEEBTTCCEEEECBTTCCEEEECTT-CC----EEEEECGG-GTCTTEEEEEECCSTTTTTEEEEEECT
T ss_pred ----eccCCCCCeEECCCCCEEEEeCCCCeEEEECCC-CC----EEEEeecc-cccCCceEEEEecccCCCCEEEEECCC
Confidence 012468999999999999999999999999987 41 22211222 235679999998 67 789999854
|
| >3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans} | Back alignment and structure |
|---|
Probab=99.65 E-value=2.5e-13 Score=123.25 Aligned_cols=240 Identities=10% Similarity=0.120 Sum_probs=149.6
Q ss_pred CccccceEEcCCCCE-EEEEecCCeEEEEECCCCCCCccceeeeEEecccCcCCCccce-EEEeCCCCeEEEEEeCcCCC
Q 020019 44 SFFRECAKWDDSGRR-FIVSFLDGGIGQVAVPDDYPPGTVLEEVTLVKDLELTGNGSLG-LVLDHPRNRLLVVAADVFGN 121 (332)
Q Consensus 44 ~~~pegia~d~~g~~-~~~~~~~g~I~~vd~~~~~~~~~~~~~~~~~~~~~~~~~~~~g-i~vd~~~g~l~v~~~~~~~~ 121 (332)
...| +++++++|+. |+++..+++|++++..+++. .. ..... +..+.. ++++++...+| +..+..
T Consensus 40 ~~~~-~~~~s~dg~~l~~~~~~~~~i~~~d~~~~~~----~~--~~~~~----~~~~~~~~~~s~dg~~l~-~~~~~~-- 105 (331)
T 3u4y_A 40 YDFV-DTAITSDCSNVVVTSDFCQTLVQIETQLEPP----KV--VAIQE----GQSSMADVDITPDDQFAV-TVTGLN-- 105 (331)
T ss_dssp CCEE-EEEECSSSCEEEEEESTTCEEEEEECSSSSC----EE--EEEEE----CSSCCCCEEECTTSSEEE-ECCCSS--
T ss_pred CCcc-eEEEcCCCCEEEEEeCCCCeEEEEECCCCce----eE--Eeccc----CCCCccceEECCCCCEEE-EecCCC--
Confidence 3356 9999999984 44556678999999987752 01 12211 125666 99999734455 433210
Q ss_pred ccceEEEEECCCCcEEEEEecCCCCCCCCCccceEECCCCc-EEEEeCCCCe---EEEEcCCCceEEEecCCCCCCcccc
Q 020019 122 KYSAVAAYDLSTWNRLFLTQLSGPSDGKSCADDVTVDAEGN-AYVTDVTGSK---IWKVGVKGEFLSIISSPLFTPKEWY 197 (332)
Q Consensus 122 ~~~~l~~~d~~~g~~~~~~~l~~~~~~~~~~ndiavd~dG~-lyvtd~~~~~---I~~v~~~g~~~~~~~~~~~~~p~~~ 197 (332)
....|.+||.++++....... ...|++++++|+|+ +|+++...+. +|.++.+|+..... ....
T Consensus 106 ~~~~i~v~d~~~~~~~~~~~~------~~~~~~~~~spdg~~l~~~~~~~~~~i~~~~~~~~g~~~~~~-~~~~------ 172 (331)
T 3u4y_A 106 HPFNMQSYSFLKNKFISTIPI------PYDAVGIAISPNGNGLILIDRSSANTVRRFKIDADGVLFDTG-QEFI------ 172 (331)
T ss_dssp SSCEEEEEETTTTEEEEEEEC------CTTEEEEEECTTSSCEEEEEETTTTEEEEEEECTTCCEEEEE-EEEE------
T ss_pred CcccEEEEECCCCCeEEEEEC------CCCccceEECCCCCEEEEEecCCCceEEEEEECCCCcEeecC-Cccc------
Confidence 112799999998887665443 24578999999996 9999887666 55555556543221 0000
Q ss_pred cCccccCeEEEccCc-eEEEEeCCCCeEEEEeCCCCCCccceeEEEEecCCCCCCCCeEEEeCCCe-EEEEeCCc--eEE
Q 020019 198 KNLVGLNGIVYHPDG-FLIVIHTFSGNLFKIDIVDGVGEGEEIKLIRVAGGPLSFGDGLELLSPTK-LVVAGNPS--ARL 273 (332)
Q Consensus 198 ~~~~~~nGi~~~~dG-~Lyva~~~~~~i~~id~~~~~~~~~~~~~v~~~g~~~~~pdGi~~~~dG~-l~va~~~~--~~~ 273 (332)
.....+.+++++||| +||++....++|+.+++.+++.. +.+..+... ..|.++++++||+ ||+++... ..+
T Consensus 173 ~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~d~~~~~~~-~~~~~~~~~----~~~~~~~~spdg~~l~v~~~~~~~i~~ 247 (331)
T 3u4y_A 173 SGGTRPFNITFTPDGNFAFVANLIGNSIGILETQNPENI-TLLNAVGTN----NLPGTIVVSRDGSTVYVLTESTVDVFN 247 (331)
T ss_dssp CSSSSEEEEEECTTSSEEEEEETTTTEEEEEECSSTTSC-EEEEEEECS----SCCCCEEECTTSSEEEEECSSEEEEEE
T ss_pred cCCCCccceEECCCCCEEEEEeCCCCeEEEEECCCCccc-ceeeeccCC----CCCceEEECCCCCEEEEEEcCCCEEEE
Confidence 122457899999999 79999999999999999876310 014444422 5788999999988 78886432 334
Q ss_pred EEcCCCceEEEEEeeecC----CC-cccceEEEE--ECCeEEEEEecCcc
Q 020019 274 VESSDGWETAAVVAKFSG----PV-HRLATAATV--KDGRVYLNHMLGFG 316 (332)
Q Consensus 274 v~~~dg~~~~~~~~~~~~----~~-~~~pt~va~--~~g~lyv~~~~g~~ 316 (332)
+...++ +...+...... +. ......+++ ++.+||+++..+..
T Consensus 248 ~d~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~ 296 (331)
T 3u4y_A 248 FNQLSG-TLSFVKSFGHGLLIDPRPLFGANQMALNKTETKLFISANISRE 296 (331)
T ss_dssp EETTTT-EEEEEEEEECCCCCCCGGGTTCCCEEECTTSSEEEEEETTTTE
T ss_pred EECCCC-ceeeecccccccccCCCCcccccceEECCCCCEEEEecCCCCc
Confidence 445556 33222211111 11 111234677 45678887765533
|
| >2g8s_A Glucose/sorbosone dehydrogenases; bladed beta-propellor, pyrolloquinoline quinone (PQQ), quinoprotein, sugar binding protein; HET: MSE; 1.50A {Escherichia coli K12} | Back alignment and structure |
|---|
Probab=99.64 E-value=3.5e-14 Score=132.13 Aligned_cols=250 Identities=13% Similarity=0.115 Sum_probs=149.0
Q ss_pred cccceEEcCCCC-EEEEEecCCeEEEEECCCCCCCccceeeeEEecccCc--C-CCccceEEEeCC---CCeEEEEEeCc
Q 020019 46 FRECAKWDDSGR-RFIVSFLDGGIGQVAVPDDYPPGTVLEEVTLVKDLEL--T-GNGSLGLVLDHP---RNRLLVVAADV 118 (332)
Q Consensus 46 ~pegia~d~~g~-~~~~~~~~g~I~~vd~~~~~~~~~~~~~~~~~~~~~~--~-~~~~~gi~vd~~---~g~l~v~~~~~ 118 (332)
.|.+++++++|+ +|++.. .|+|++++.++... + .+...+.. . ..++.||+++|+ +++||++....
T Consensus 19 ~P~~i~~~pdG~~l~V~e~-~G~i~~~~~~g~~~-----~--~~~~~~~v~~~g~~g~~gia~~pdf~~~g~lYv~~~~~ 90 (353)
T 2g8s_A 19 HPWALAFLPDNHGMLITLR-GGELRHWQAGKGLS-----A--PLSGVPDVWAHGQGGLLDVVLAPDFAQSRRIWLSYSEV 90 (353)
T ss_dssp SEEEEEECSTTCCEEEEET-TTEEEEEETTTEEC-----C--CCBSCCCCCCSTTCSEEEEEECTTHHHHCEEEEEEEEE
T ss_pred CcEEEEEcCCCCEEEEEeC-CceEEEEeCCCcee-----e--EecCCcccccCCCCCceeEEECCCCCCCCEEEEEEeCC
Confidence 899999999999 888775 59999999753211 1 11111111 1 136899999995 69999997531
Q ss_pred CCC--ccceEEEEECCCC--cEEE---EE-ecCCCCCCCCCccceEECCCCcEEEEeC-------------CCCeEEEEc
Q 020019 119 FGN--KYSAVAAYDLSTW--NRLF---LT-QLSGPSDGKSCADDVTVDAEGNAYVTDV-------------TGSKIWKVG 177 (332)
Q Consensus 119 ~~~--~~~~l~~~d~~~g--~~~~---~~-~l~~~~~~~~~~ndiavd~dG~lyvtd~-------------~~~~I~~v~ 177 (332)
... ...+|.+|+.+.+ ++.. .+ .++......+++++|+++|||.|||+.. ..++|+|++
T Consensus 91 ~~~g~~~~~v~r~~~~~~~~~~~~~~~i~~~~p~~~~~~h~~~~l~~~pdG~Lyv~~Gd~~~~~~~q~~~~~~g~I~ri~ 170 (353)
T 2g8s_A 91 GDDGKAGTAVGYGRLSDDLSKVTDFRTVFRQMPKLSTGNHFGGRLVFDGKGYLFIALGENNQRPTAQDLDKLQGKLVRLT 170 (353)
T ss_dssp CSSSCEEEEEEEEEECTTSSBEEEEEEEEECSSCCBSSSCCCCCEEECSSSEEEEEECCTTCGGGGGCTTSCTTEEEEEE
T ss_pred CCCCCceeEEEEEEECCCCCCCCceEEEEEECCCCCCCcccCccEEECCCCcEEEEECCCCCCCccCCCCCCCeEEEEEC
Confidence 100 1356888877543 2221 12 2321012346789999999999999953 247899999
Q ss_pred CCCceEEEecCCCCC------CcccccCccccCeEEEcc-CceEEEEeCCCC---eEEEEeCCCCCC-----cc------
Q 020019 178 VKGEFLSIISSPLFT------PKEWYKNLVGLNGIVYHP-DGFLIVIHTFSG---NLFKIDIVDGVG-----EG------ 236 (332)
Q Consensus 178 ~~g~~~~~~~~~~~~------~p~~~~~~~~~nGi~~~~-dG~Lyva~~~~~---~i~~id~~~~~~-----~~------ 236 (332)
++|+... .++ |. ......++.+|.||++++ +|+||+++...+ +|.+|... +.. +.
T Consensus 171 ~dG~~p~--~np-f~~~~~~~~~i~a~G~rnp~gl~~d~~~g~l~~~d~g~~~~dei~~i~~G-~nyGwp~~~~~~~~~~ 246 (353)
T 2g8s_A 171 DQGEIPD--DNP-FIKESGVRAEIWSYGIRNPQGMAMNPWSNALWLNEHGPRGGDEINIPQKG-KNYGWPLATWGINYSG 246 (353)
T ss_dssp TTSCCCT--TCT-TTTSTTSCTTEEEECCSEEEEEEEETTTTEEEEEEECSBSCEEEECCCTT-CBCCTTTBCSSBCTTS
T ss_pred CCCCCCC--CCC-CcCCCCCCccEEEEcCcCccceEEECCCCCEEEEecCCCCCcEEeEeccC-CcCCCCCccCCCCCCC
Confidence 9987321 111 11 011223456799999999 679999998753 55555332 110 00
Q ss_pred ------------cee-EEEEecCCCCCCCCeEEEeC-------CCeEEEEeCCc--eEEEEcCCCceEEEEEeeecCCCc
Q 020019 237 ------------EEI-KLIRVAGGPLSFGDGLELLS-------PTKLVVAGNPS--ARLVESSDGWETAAVVAKFSGPVH 294 (332)
Q Consensus 237 ------------~~~-~~v~~~g~~~~~pdGi~~~~-------dG~l~va~~~~--~~~v~~~dg~~~~~~~~~~~~~~~ 294 (332)
... ..+... +...|.||++.. +|++|+++... ++.+...++ +.......+. ...
T Consensus 247 ~~~~~~~~~~~~~~~~P~~~~~--~~~ap~G~~~y~g~~fp~~~g~l~v~~~~~~~v~~~~~~~~-~~~~~~~~~~-~~~ 322 (353)
T 2g8s_A 247 FKIPEAKGEIVAGTEQPVFYWK--DSPAVSGMAFYNSDKFPQWQQKLFIGALKDKDVIVMSVNGD-KVTEDGRILT-DRG 322 (353)
T ss_dssp SCCTTCCBSSCTTSCCCSEEES--SCCCEEEEEEECCSSSGGGTTEEEEEETTTTEEEEEEEETT-EEEEEEEESG-GGC
T ss_pred CccCcccCCCCCCccCCeEEeC--CCcCcceeEEECCccCcccCCcEEEEEccCCEEEEEEeCCC-eEeeeEEccc-CCC
Confidence 000 001111 224688999974 58999998543 333333344 2211112121 224
Q ss_pred ccceEEEE-ECCeEEEEE
Q 020019 295 RLATAATV-KDGRVYLNH 311 (332)
Q Consensus 295 ~~pt~va~-~~g~lyv~~ 311 (332)
..|..+++ .+|.|||+.
T Consensus 323 ~rp~~v~~~pdG~lyv~t 340 (353)
T 2g8s_A 323 QRIRDVRTGPDGYLYVLT 340 (353)
T ss_dssp CCEEEEEECTTSCEEEEE
T ss_pred CceeEEEECCCCcEEEEE
Confidence 46899999 789999964
|
| >3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV} | Back alignment and structure |
|---|
Probab=99.63 E-value=9.8e-14 Score=125.81 Aligned_cols=193 Identities=11% Similarity=0.052 Sum_probs=135.1
Q ss_pred CCccccceEEcCCCCEEEEEecCCeEEEEECCCCCCCccceeeeEEecc-cCcCCCccceEEEeCCCCeEEEEEeCcCC-
Q 020019 43 SSFFRECAKWDDSGRRFIVSFLDGGIGQVAVPDDYPPGTVLEEVTLVKD-LELTGNGSLGLVLDHPRNRLLVVAADVFG- 120 (332)
Q Consensus 43 ~~~~pegia~d~~g~~~~~~~~~g~I~~vd~~~~~~~~~~~~~~~~~~~-~~~~~~~~~gi~vd~~~g~l~v~~~~~~~- 120 (332)
....|.+++++++|++|+++...++|++++++ ++. . .+... .+...+.|++++++++ |++|+++...+.
T Consensus 84 ~~~~~~gl~~d~dG~l~v~~~~~~~v~~~~~~-g~~-----~--~~~~~~~~~~~~~~~~i~~d~d-G~l~~td~~~g~~ 154 (305)
T 3dr2_A 84 ATAFTNGNAVDAQQRLVHCEHGRRAITRSDAD-GQA-----H--LLVGRYAGKRLNSPNDLIVARD-GAIWFTDPPFGLR 154 (305)
T ss_dssp SCSCEEEEEECTTSCEEEEETTTTEEEEECTT-SCE-----E--EEECEETTEECSCCCCEEECTT-SCEEEECCSGGGS
T ss_pred CCCccceeeECCCCCEEEEECCCCEEEEECCC-CCE-----E--EEEeccCCCccCCCCCEEECCC-CCEEEeCcCCCcc
Confidence 34478999999999988887667899999986 542 1 22211 1112246899999996 999998642110
Q ss_pred -----------CccceEEEEECCCCcEEEEEecCCCCCCCCCccceEECCCCc-EEEEeCCC-----CeEEEEcCCCceE
Q 020019 121 -----------NKYSAVAAYDLSTWNRLFLTQLSGPSDGKSCADDVTVDAEGN-AYVTDVTG-----SKIWKVGVKGEFL 183 (332)
Q Consensus 121 -----------~~~~~l~~~d~~~g~~~~~~~l~~~~~~~~~~ndiavd~dG~-lyvtd~~~-----~~I~~v~~~g~~~ 183 (332)
...+.|++||+++++...... ...||++++++||+ +|++++.. +.|++++.++...
T Consensus 155 ~~~~~~~~~~~~~~~~v~~~d~~~g~~~~~~~-------~~~p~gl~~spdg~~lyv~~~~~~~~~~~~i~~~~~~~~~l 227 (305)
T 3dr2_A 155 KPSQGCPADPELAHHSVYRLPPDGSPLQRMAD-------LDHPNGLAFSPDEQTLYVSQTPEQGHGSVEITAFAWRDGAL 227 (305)
T ss_dssp CGGGSCCCCCSSSCEEEEEECSSSCCCEEEEE-------ESSEEEEEECTTSSEEEEEECCC---CCCEEEEEEEETTEE
T ss_pred ccccccccccccCCCeEEEEcCCCCcEEEEec-------CCCCcceEEcCCCCEEEEEecCCcCCCCCEEEEEEecCCCc
Confidence 123579999998887654332 25789999999996 99999874 7899988663321
Q ss_pred ---EEecCCCCCCcccccCccccCeEEEccCceEEEEeCCCCeEEEEeCCCCCCccceeEEEEecCCCCCCCCeEEEeCC
Q 020019 184 ---SIISSPLFTPKEWYKNLVGLNGIVYHPDGFLIVIHTFSGNLFKIDIVDGVGEGEEIKLIRVAGGPLSFGDGLELLSP 260 (332)
Q Consensus 184 ---~~~~~~~~~~p~~~~~~~~~nGi~~~~dG~Lyva~~~~~~i~~id~~~~~~~~~~~~~v~~~g~~~~~pdGi~~~~d 260 (332)
..+... ....|+||+++++|+||++. .+.|+++++++. ....+..+ ..|..++++++
T Consensus 228 ~~~~~~~~~---------~~~~pdgi~~d~~G~lwv~~--~~gv~~~~~~g~-----~~~~~~~~----~~~~~~~f~~d 287 (305)
T 3dr2_A 228 HDRRHFASV---------PDGLPDGFCVDRGGWLWSSS--GTGVCVFDSDGQ-----LLGHIPTP----GTASNCTFDQA 287 (305)
T ss_dssp EEEEEEECC---------SSSCCCSEEECTTSCEEECC--SSEEEEECTTSC-----EEEEEECS----SCCCEEEECTT
T ss_pred cCCeEEEEC---------CCCCCCeEEECCCCCEEEec--CCcEEEECCCCC-----EEEEEECC----CceeEEEEeCC
Confidence 111110 12358999999999999987 346999998643 56666654 25889999877
Q ss_pred C-eEEEEeCCce
Q 020019 261 T-KLVVAGNPSA 271 (332)
Q Consensus 261 G-~l~va~~~~~ 271 (332)
+ .||++.....
T Consensus 288 ~~~L~it~~~~l 299 (305)
T 3dr2_A 288 QQRLFITGGPCL 299 (305)
T ss_dssp SCEEEEEETTEE
T ss_pred CCEEEEEcCCeE
Confidence 4 6999987653
|
| >1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A | Back alignment and structure |
|---|
Probab=99.63 E-value=3.1e-15 Score=151.22 Aligned_cols=215 Identities=13% Similarity=0.090 Sum_probs=144.3
Q ss_pred CCeEEEEECCCCCCCccceeeeEEecccCcCCCccceEEEeCCCCeEEEEEeCcCCCccceEEEEECCC----CcEEEEE
Q 020019 65 DGGIGQVAVPDDYPPGTVLEEVTLVKDLELTGNGSLGLVLDHPRNRLLVVAADVFGNKYSAVAAYDLST----WNRLFLT 140 (332)
Q Consensus 65 ~g~I~~vd~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~vd~~~g~l~v~~~~~~~~~~~~l~~~d~~~----g~~~~~~ 140 (332)
...|.+++..+.+. . .++ +.. ..|.||++++.+++||+++.. ...|+++++++ .....
T Consensus 385 ~~~I~~id~~~~~~-----~--~~~--~~~--~~p~gla~d~~~~~Ly~sD~~-----~~~I~~~~~~g~~~~~~~~~-- 446 (699)
T 1n7d_A 385 RHEVRKMTLDRSEY-----T--SLI--PNL--RNVVALDTEVASNRIYWSDLS-----QRMICSTQLDRAHGVSSYDT-- 446 (699)
T ss_dssp TTC-CEECTTSCCE-----E--CCS--CCC--TTCCCCEEETTTTEEEECCTT-----TTSBEEEESCCCCC-CCCCC--
T ss_pred ccceEEEeCCCCcc-----e--eee--ccC--cceEEEccccccCeEEEEecC-----CCeEEEEecCCCCCCcceEE--
Confidence 36789998875542 1 122 122 378899999877899999863 35688899875 11111
Q ss_pred ecCCCCCCCCCccceEECC-CCcEEEEeCCCCeEEEEcCCCceEEEecCCCCCCcccccCccccCeEEEccCc-eEEEEe
Q 020019 141 QLSGPSDGKSCADDVTVDA-EGNAYVTDVTGSKIWKVGVKGEFLSIISSPLFTPKEWYKNLVGLNGIVYHPDG-FLIVIH 218 (332)
Q Consensus 141 ~l~~~~~~~~~~ndiavd~-dG~lyvtd~~~~~I~~v~~~g~~~~~~~~~~~~~p~~~~~~~~~nGi~~~~dG-~Lyva~ 218 (332)
.+ ..+...|.+|++|. .|+||++|...++|++++++|+....+... .+..|+||+++|++ +|||++
T Consensus 447 ~i---~~~~~~P~glavD~~~g~LY~tD~~~~~I~v~d~dg~~~~~l~~~---------~~~~P~giavDp~~g~ly~td 514 (699)
T 1n7d_A 447 VI---SRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFRE---------QGSKPRAIVVDPVHGFMYWTD 514 (699)
T ss_dssp BC---CSCC--CCCEECCCSSSBCEECCTTTSCEEEEBSSSCCEEEECCC---------SSCCCCCEECCSSSSCCEECC
T ss_pred EE---eCCCCCcceEEEEeeCCcEEEEeccCCeEEEEecCCCceEEEEeC---------CCCCcceEEEccCCCcEEEcc
Confidence 11 11235789999996 478999999999999999998765443222 23468999999975 999999
Q ss_pred CCC-CeEEEEeCCCCCCccceeEEEEecCCCCCCCCeEEEeCC-CeEEEEeCCce-EEEEcCCCceEEEEEeeecCCCcc
Q 020019 219 TFS-GNLFKIDIVDGVGEGEEIKLIRVAGGPLSFGDGLELLSP-TKLVVAGNPSA-RLVESSDGWETAAVVAKFSGPVHR 295 (332)
Q Consensus 219 ~~~-~~i~~id~~~~~~~~~~~~~v~~~g~~~~~pdGi~~~~d-G~l~va~~~~~-~~v~~~dg~~~~~~~~~~~~~~~~ 295 (332)
+.. ++|+++++++. ..+.+. . ..+..|.||+++++ ++||+++.... ..++..+|.....+... ...+.
T Consensus 515 ~~~~~~I~~~~~dG~-----~~~~l~-~-~~l~~PnGlavd~~~~~LY~aD~~~~~I~~~d~dG~~~~~~~~~--~~~~~ 585 (699)
T 1n7d_A 515 WGTPAKIKKGGLNGV-----DIYSLV-T-ENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRKTILED--EKRLA 585 (699)
T ss_dssp CSSSCCEEBCCSSSC-----CCCEES-C-SSCSSCCCEEECTTTCCEEEEETTTTEEEEECSSSSCCEEECCC--SSSCS
T ss_pred cCCCCeEEEEeCCCC-----CeeEEE-e-CCCCCccEEEEeccCCEEEEEecCCCeEEEEccCCCceEEEEec--CCcCC
Confidence 876 89999998743 222222 2 24678999999975 88999985432 22445556222223221 13467
Q ss_pred cceEEEEECCeEEEEEecCcccc
Q 020019 296 LATAATVKDGRVYLNHMLGFGYP 318 (332)
Q Consensus 296 ~pt~va~~~g~lyv~~~~g~~~~ 318 (332)
.|.++++.+++||++++....+.
T Consensus 586 ~P~glavd~~~lywtd~~~~~V~ 608 (699)
T 1n7d_A 586 HPFSLAVFEDKVFWTDIINEAIF 608 (699)
T ss_dssp SCCCCEEETTEEEEECSTTTCEE
T ss_pred CceEeEEECCEEEEEeCCCCeEE
Confidence 89999998889999887665544
|
| >2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A* | Back alignment and structure |
|---|
Probab=99.62 E-value=6.4e-14 Score=124.82 Aligned_cols=192 Identities=14% Similarity=0.040 Sum_probs=134.3
Q ss_pred ccceEEEeCCCCeEEEEEeCcCCCccceEEEEECCCCcEEEEEecCCCCCCCCCccceEECCCCcEEEEeCCCCeEEEEc
Q 020019 98 GSLGLVLDHPRNRLLVVAADVFGNKYSAVAAYDLSTWNRLFLTQLSGPSDGKSCADDVTVDAEGNAYVTDVTGSKIWKVG 177 (332)
Q Consensus 98 ~~~gi~vd~~~g~l~v~~~~~~~~~~~~l~~~d~~~g~~~~~~~l~~~~~~~~~~ndiavd~dG~lyvtd~~~~~I~~v~ 177 (332)
.+.||+++++ ++||++.... ..+.|.++|++++++...+.+. ...++.+++++. +.+|++++..+.++++|
T Consensus 22 f~~Gl~~~~d-g~Lyvstg~~---~~s~v~~iD~~tg~v~~~i~l~----~~~fgeGi~~~g-~~lyv~t~~~~~v~viD 92 (266)
T 2iwa_A 22 FTQGLVYAEN-DTLFESTGLY---GRSSVRQVALQTGKVENIHKMD----DSYFGEGLTLLN-EKLYQVVWLKNIGFIYD 92 (266)
T ss_dssp CEEEEEECST-TEEEEEECST---TTCEEEEEETTTCCEEEEEECC----TTCCEEEEEEET-TEEEEEETTCSEEEEEE
T ss_pred CcccEEEeCC-CeEEEECCCC---CCCEEEEEECCCCCEEEEEecC----CCcceEEEEEeC-CEEEEEEecCCEEEEEE
Confidence 4789999997 8999998532 2367999999999998877762 246777888884 47999999999999999
Q ss_pred CC-CceEEEecCCCCCCcccccCccccCeEEEccCc-eEEEEeCCCCeEEEEeCCCCCCccceeEEEEec--CCCCCCCC
Q 020019 178 VK-GEFLSIISSPLFTPKEWYKNLVGLNGIVYHPDG-FLIVIHTFSGNLFKIDIVDGVGEGEEIKLIRVA--GGPLSFGD 253 (332)
Q Consensus 178 ~~-g~~~~~~~~~~~~~p~~~~~~~~~nGi~~~~dG-~Lyva~~~~~~i~~id~~~~~~~~~~~~~v~~~--g~~~~~pd 253 (332)
++ ++....+..+ .+.|..+.+|| +||+++ .+++|+.||+++.+ .+..+.+. +.++..|.
T Consensus 93 ~~t~~v~~~i~~g------------~~~g~glt~Dg~~l~vs~-gs~~l~viD~~t~~----v~~~I~Vg~~~~p~~~~n 155 (266)
T 2iwa_A 93 RRTLSNIKNFTHQ------------MKDGWGLATDGKILYGSD-GTSILYEIDPHTFK----LIKKHNVKYNGHRVIRLN 155 (266)
T ss_dssp TTTTEEEEEEECC------------SSSCCEEEECSSSEEEEC-SSSEEEEECTTTCC----EEEEEECEETTEECCCEE
T ss_pred CCCCcEEEEEECC------------CCCeEEEEECCCEEEEEC-CCCeEEEEECCCCc----EEEEEEECCCCcccccce
Confidence 87 4444333211 13456666788 999999 68999999999863 56666653 23445688
Q ss_pred eEEEeCCCeEEEEeCCc--eEEEEcCCCceEEEEEe-eec-------CCCcccceEEEE--ECCeEEEEEecCcc
Q 020019 254 GLELLSPTKLVVAGNPS--ARLVESSDGWETAAVVA-KFS-------GPVHRLATAATV--KDGRVYLNHMLGFG 316 (332)
Q Consensus 254 Gi~~~~dG~l~va~~~~--~~~v~~~dg~~~~~~~~-~~~-------~~~~~~pt~va~--~~g~lyv~~~~g~~ 316 (332)
+|++. +|+||++.... ..++...+|...+.+.- .+. .+....|.++++ .++++||++.....
T Consensus 156 ele~~-dg~lyvn~~~~~~V~vID~~tg~V~~~I~~~g~~~~~~~~~~~~~~v~nGIa~~~~~~~lfVTgk~~~~ 229 (266)
T 2iwa_A 156 ELEYI-NGEVWANIWQTDCIARISAKDGTLLGWILLPNLRKKLIDEGFRDIDVLNGIAWDQENKRIFVTGKLWPK 229 (266)
T ss_dssp EEEEE-TTEEEEEETTSSEEEEEETTTCCEEEEEECHHHHHHHHHTTCTTCCCEEEEEEETTTTEEEEEETTCSE
T ss_pred eEEEE-CCEEEEecCCCCeEEEEECCCCcEEEEEECCCcccccccccccccCceEEEEEcCCCCEEEEECCCCCe
Confidence 99998 79999998543 34456666732333321 110 012357889999 45799998765544
|
| >2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A | Back alignment and structure |
|---|
Probab=99.61 E-value=7.8e-14 Score=127.20 Aligned_cols=203 Identities=17% Similarity=0.205 Sum_probs=138.4
Q ss_pred CccccceEEcCCCCEEEEEecC----CeEEEEECCCCCCCccceeeeEEecccCcCCCccceEEEeCCCCeEEEEEeCcC
Q 020019 44 SFFRECAKWDDSGRRFIVSFLD----GGIGQVAVPDDYPPGTVLEEVTLVKDLELTGNGSLGLVLDHPRNRLLVVAADVF 119 (332)
Q Consensus 44 ~~~pegia~d~~g~~~~~~~~~----g~I~~vd~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~vd~~~g~l~v~~~~~~ 119 (332)
...|.+++++++|++|++.... +.|++++++++.. . .+..... .+..+++++++++ |++|+++....
T Consensus 86 ~~~~~~i~~~~dg~l~v~~~~~~~~~~~i~~~d~~~~~~-----~--~~~~~~~-~~~~~~~i~~d~~-g~l~v~~~~~~ 156 (333)
T 2dg1_A 86 KANPAAIKIHKDGRLFVCYLGDFKSTGGIFAATENGDNL-----Q--DIIEDLS-TAYCIDDMVFDSK-GGFYFTDFRGY 156 (333)
T ss_dssp SSSEEEEEECTTSCEEEEECTTSSSCCEEEEECTTSCSC-----E--EEECSSS-SCCCEEEEEECTT-SCEEEEECCCB
T ss_pred CCCcceEEECCCCcEEEEeCCCCCCCceEEEEeCCCCEE-----E--EEEccCc-cCCcccceEECCC-CCEEEEecccc
Confidence 3468899999999999887554 6899999886652 1 2332111 2246899999996 99999875311
Q ss_pred -CCccceEEEEECCCCcEEEEEecCCCCCCCCCccceEECCCCc-EEEEeCCCCeEEEEcC--CCceEEEecCCCCCCcc
Q 020019 120 -GNKYSAVAAYDLSTWNRLFLTQLSGPSDGKSCADDVTVDAEGN-AYVTDVTGSKIWKVGV--KGEFLSIISSPLFTPKE 195 (332)
Q Consensus 120 -~~~~~~l~~~d~~~g~~~~~~~l~~~~~~~~~~ndiavd~dG~-lyvtd~~~~~I~~v~~--~g~~~~~~~~~~~~~p~ 195 (332)
......|+++|+++++......- ...+++++++++|+ +|+++...+.|++++. +|+....+.......
T Consensus 157 ~~~~~~~l~~~~~~~~~~~~~~~~------~~~~~~i~~~~dg~~l~v~~~~~~~i~~~d~~~~g~~~~~~~~~~~~~-- 228 (333)
T 2dg1_A 157 STNPLGGVYYVSPDFRTVTPIIQN------ISVANGIALSTDEKVLWVTETTANRLHRIALEDDGVTIQPFGATIPYY-- 228 (333)
T ss_dssp TTBCCEEEEEECTTSCCEEEEEEE------ESSEEEEEECTTSSEEEEEEGGGTEEEEEEECTTSSSEEEEEEEEEEE--
T ss_pred ccCCCceEEEEeCCCCEEEEeecC------CCcccceEECCCCCEEEEEeCCCCeEEEEEecCCCcCcccccceEEEe--
Confidence 01235799999887666543221 24588999999996 9999988899999987 444322110000000
Q ss_pred cccCccccCeEEEccCceEEEEeCCCCeEEEEeCCCCCCccceeEEEEecCC---CCCCCCeEEEeCCC-eEEEEeCC
Q 020019 196 WYKNLVGLNGIVYHPDGFLIVIHTFSGNLFKIDIVDGVGEGEEIKLIRVAGG---PLSFGDGLELLSPT-KLVVAGNP 269 (332)
Q Consensus 196 ~~~~~~~~nGi~~~~dG~Lyva~~~~~~i~~id~~~~~~~~~~~~~v~~~g~---~~~~pdGi~~~~dG-~l~va~~~ 269 (332)
......|++|+++++|.||+++..+++|+++++++. .+..+..+.. .+..|.++++++|| .||++...
T Consensus 229 -~~~~~~~~~i~~d~~G~l~v~~~~~~~v~~~d~~g~-----~~~~~~~~~~~~g~~~~~~~~~~~~dg~~L~v~~~~ 300 (333)
T 2dg1_A 229 -FTGHEGPDSCCIDSDDNLYVAMYGQGRVLVFNKRGY-----PIGQILIPGRDEGHMLRSTHPQFIPGTNQLIICSND 300 (333)
T ss_dssp -CCSSSEEEEEEEBTTCCEEEEEETTTEEEEECTTSC-----EEEEEECTTGGGTCSCBCCEEEECTTSCEEEEEEEC
T ss_pred -cCCCCCCCceEECCCCCEEEEEcCCCEEEEECCCCC-----EEEEEEcCCCccccccCcceEEECCCCCEEEEEeCc
Confidence 001235789999999999999988899999998533 4555554311 12268999999885 89998754
|
| >3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A | Back alignment and structure |
|---|
Probab=99.61 E-value=4.6e-13 Score=118.28 Aligned_cols=188 Identities=14% Similarity=0.153 Sum_probs=131.3
Q ss_pred ccccceEEcCCCCEEEEEecC--CeEEEEECCCCCCCccceeeeEEecccCcCCCccceEEEeCCCCeEEEEEeCcCCCc
Q 020019 45 FFRECAKWDDSGRRFIVSFLD--GGIGQVAVPDDYPPGTVLEEVTLVKDLELTGNGSLGLVLDHPRNRLLVVAADVFGNK 122 (332)
Q Consensus 45 ~~pegia~d~~g~~~~~~~~~--g~I~~vd~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~vd~~~g~l~v~~~~~~~~~ 122 (332)
.+.+|+.++ ++.+|.+.-.. ++|.++|+.+++ +.. ...-++.. -..||+++. ++||+++..
T Consensus 43 ~ftqGL~~~-~~~LyestG~~g~S~v~~vD~~Tgk----v~~--~~~l~~~~---FgeGit~~g--~~ly~ltw~----- 105 (262)
T 3nol_A 43 AFTEGFFYR-NGYFYESTGLNGRSSIRKVDIESGK----TLQ--QIELGKRY---FGEGISDWK--DKIVGLTWK----- 105 (262)
T ss_dssp CEEEEEEEE-TTEEEEEEEETTEEEEEEECTTTCC----EEE--EEECCTTC---CEEEEEEET--TEEEEEESS-----
T ss_pred cccceEEEE-CCEEEEECCCCCCceEEEEECCCCc----EEE--EEecCCcc---ceeEEEEeC--CEEEEEEee-----
Confidence 366999999 67777776433 489999999887 233 22111111 235678774 799999863
Q ss_pred cceEEEEECCCCcEEEEEecCCCCCCCCCccceEECCCCcEEEEeCCCCeEEEEcCC-CceEEEecCCCCCCcccccCcc
Q 020019 123 YSAVAAYDLSTWNRLFLTQLSGPSDGKSCADDVTVDAEGNAYVTDVTGSKIWKVGVK-GEFLSIISSPLFTPKEWYKNLV 201 (332)
Q Consensus 123 ~~~l~~~d~~~g~~~~~~~l~~~~~~~~~~ndiavd~dG~lyvtd~~~~~I~~v~~~-g~~~~~~~~~~~~~p~~~~~~~ 201 (332)
.+.+++||+++.++...+...+ .+-+++.|. +.+|++|. .+.|+.+|+. .+....+....-.. ...
T Consensus 106 ~~~v~v~D~~t~~~~~ti~~~~------eG~glt~dg-~~L~~SdG-s~~i~~iDp~T~~v~~~I~V~~~g~-----~~~ 172 (262)
T 3nol_A 106 NGLGFVWNIRNLRQVRSFNYDG------EGWGLTHND-QYLIMSDG-TPVLRFLDPESLTPVRTITVTAHGE-----ELP 172 (262)
T ss_dssp SSEEEEEETTTCCEEEEEECSS------CCCCEEECS-SCEEECCS-SSEEEEECTTTCSEEEEEECEETTE-----ECC
T ss_pred CCEEEEEECccCcEEEEEECCC------CceEEecCC-CEEEEECC-CCeEEEEcCCCCeEEEEEEeccCCc-----ccc
Confidence 4679999999999887777631 223555443 46999994 7999999998 45443332111001 124
Q ss_pred ccCeEEEccCceEEEEeCCCCeEEEEeCCCCCCccceeEEEEecC---------CCCCCCCeEEEeCC-CeEEEEe
Q 020019 202 GLNGIVYHPDGFLIVIHTFSGNLFKIDIVDGVGEGEEIKLIRVAG---------GPLSFGDGLELLSP-TKLVVAG 267 (332)
Q Consensus 202 ~~nGi~~~~dG~Lyva~~~~~~i~~id~~~~~~~~~~~~~v~~~g---------~~~~~pdGi~~~~d-G~l~va~ 267 (332)
.+|.+.+. +|+||++.+.++.|.+||+++++ .+..+.+.+ .....|.|||++++ ++|||++
T Consensus 173 ~lNELe~~-~G~lyan~w~~~~I~vIDp~tG~----V~~~Id~~~L~~~~~~~~~~~~vlNGIA~dp~~~~lfVTG 243 (262)
T 3nol_A 173 ELNELEWV-DGEIFANVWQTNKIVRIDPETGK----VTGIIDLNGILAEAGPLPSPIDVLNGIAWDKEHHRLFVTG 243 (262)
T ss_dssp CEEEEEEE-TTEEEEEETTSSEEEEECTTTCB----EEEEEECTTGGGGSCSCCSSCCCEEEEEEETTTTEEEEEE
T ss_pred ccceeEEE-CCEEEEEEccCCeEEEEECCCCc----EEEEEECCcCccccccccCcCCceEEEEEcCCCCEEEEEC
Confidence 57888887 78999999999999999999983 567777642 01247899999986 7899997
|
| >3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris} | Back alignment and structure |
|---|
Probab=99.60 E-value=3.3e-13 Score=118.20 Aligned_cols=191 Identities=17% Similarity=0.182 Sum_probs=131.8
Q ss_pred cCCccccceEEcCCCCEEEEE-ec-CCeEEEEECCCCCCCccceeeeEEecccCcCCCccceEEEeCCCCeEEEEEeCcC
Q 020019 42 SSSFFRECAKWDDSGRRFIVS-FL-DGGIGQVAVPDDYPPGTVLEEVTLVKDLELTGNGSLGLVLDHPRNRLLVVAADVF 119 (332)
Q Consensus 42 ~~~~~pegia~d~~g~~~~~~-~~-~g~I~~vd~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~vd~~~g~l~v~~~~~~ 119 (332)
....+.+|+.++. +.+|.+. .. .++|.++|+.+++ +.. ... -+.. --..|++++. ++||+++.
T Consensus 18 d~~~ftqGL~~~~-~~LyestG~~g~S~v~~vD~~tgk----v~~--~~~-l~~~--~fgeGi~~~~--~~ly~ltw--- 82 (243)
T 3mbr_X 18 DTTAFTEGLFYLR-GHLYESTGETGRSSVRKVDLETGR----ILQ--RAE-VPPP--YFGAGIVAWR--DRLIQLTW--- 82 (243)
T ss_dssp CTTCCEEEEEEET-TEEEEEECCTTSCEEEEEETTTCC----EEE--EEE-CCTT--CCEEEEEEET--TEEEEEES---
T ss_pred CCccccccEEEEC-CEEEEECCCCCCceEEEEECCCCC----EEE--EEe-CCCC--cceeEEEEeC--CEEEEEEe---
Confidence 3344889999997 6777776 32 4689999999887 233 121 1111 1235677774 89999986
Q ss_pred CCccceEEEEECCCCcEEEEEecCCCCCCCCCccceEECCCCcEEEEeCCCCeEEEEcCCC-ceEEEecCCCCCCccccc
Q 020019 120 GNKYSAVAAYDLSTWNRLFLTQLSGPSDGKSCADDVTVDAEGNAYVTDVTGSKIWKVGVKG-EFLSIISSPLFTPKEWYK 198 (332)
Q Consensus 120 ~~~~~~l~~~d~~~g~~~~~~~l~~~~~~~~~~ndiavd~dG~lyvtd~~~~~I~~v~~~g-~~~~~~~~~~~~~p~~~~ 198 (332)
+.+.+++||.++.++...+... . .+-+++-|. +.||++| +.+.|+.+|+.. +....+....-..
T Consensus 83 --~~~~v~v~D~~tl~~~~ti~~~--~----~Gwglt~dg-~~L~vSd-gs~~l~~iDp~t~~~~~~I~V~~~g~----- 147 (243)
T 3mbr_X 83 --RNHEGFVYDLATLTPRARFRYP--G----EGWALTSDD-SHLYMSD-GTAVIRKLDPDTLQQVGSIKVTAGGR----- 147 (243)
T ss_dssp --SSSEEEEEETTTTEEEEEEECS--S----CCCEEEECS-SCEEEEC-SSSEEEEECTTTCCEEEEEECEETTE-----
T ss_pred --eCCEEEEEECCcCcEEEEEeCC--C----CceEEeeCC-CEEEEEC-CCCeEEEEeCCCCeEEEEEEEccCCc-----
Confidence 3567999999999988777662 1 223455432 4799999 589999999874 4333322111000
Q ss_pred CccccCeEEEccCceEEEEeCCCCeEEEEeCCCCCCccceeEEEEecC----C------CCCCCCeEEEeCC-CeEEEEe
Q 020019 199 NLVGLNGIVYHPDGFLIVIHTFSGNLFKIDIVDGVGEGEEIKLIRVAG----G------PLSFGDGLELLSP-TKLVVAG 267 (332)
Q Consensus 199 ~~~~~nGi~~~~dG~Lyva~~~~~~i~~id~~~~~~~~~~~~~v~~~g----~------~~~~pdGi~~~~d-G~l~va~ 267 (332)
....+|.+.+. +|+||++.+.++.|.+||+.+++ .+..+.+.+ . ....|+|||++++ ++|||++
T Consensus 148 ~~~~lNeLe~~-~G~lyanvw~s~~I~vIDp~tG~----V~~~idl~~l~~~~~~~~~~~~~vlNGIA~d~~~~~lfVTG 222 (243)
T 3mbr_X 148 PLDNLNELEWV-NGELLANVWLTSRIARIDPASGK----VVAWIDLQALVPDADALTDSTNDVLNGIAFDAEHDRLFVTG 222 (243)
T ss_dssp ECCCEEEEEEE-TTEEEEEETTTTEEEEECTTTCB----EEEEEECGGGSTTTTSCCCTTSSCEEEEEEETTTTEEEEEE
T ss_pred ccccceeeEEe-CCEEEEEECCCCeEEEEECCCCC----EEEEEECCcCccccccccCCcCCceEEEEEcCCCCEEEEEC
Confidence 12456888886 88999999999999999999983 567777542 0 1247899999986 7899997
|
| >1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ... | Back alignment and structure |
|---|
Probab=99.60 E-value=1.3e-13 Score=124.26 Aligned_cols=193 Identities=16% Similarity=0.169 Sum_probs=135.2
Q ss_pred ccccceEEcCC-CCEEEEEecCCeEEEEECCCCCCCccceeeeEE-ecc-cCcCCCccceEEEeCCCCeEEEEEeCcC--
Q 020019 45 FFRECAKWDDS-GRRFIVSFLDGGIGQVAVPDDYPPGTVLEEVTL-VKD-LELTGNGSLGLVLDHPRNRLLVVAADVF-- 119 (332)
Q Consensus 45 ~~pegia~d~~-g~~~~~~~~~g~I~~vd~~~~~~~~~~~~~~~~-~~~-~~~~~~~~~gi~vd~~~g~l~v~~~~~~-- 119 (332)
..|.+++++++ |++|+++. .+.|++++++ ++. . .+ ... .......+.+|++|++ |++|+++....
T Consensus 71 ~~~~~i~~~~~~g~l~v~~~-~~~l~~~d~~-g~~-----~--~~~~~~~~~~~~~~~~~i~~d~~-g~l~v~~~~~~~~ 140 (314)
T 1pjx_A 71 GIPAGCQCDRDANQLFVADM-RLGLLVVQTD-GTF-----E--EIAKKDSEGRRMQGCNDCAFDYE-GNLWITAPAGEVA 140 (314)
T ss_dssp CCEEEEEECSSSSEEEEEET-TTEEEEEETT-SCE-----E--ECCSBCTTSCBCBCCCEEEECTT-SCEEEEECBCBCT
T ss_pred CCCceEEEecCCCcEEEEEC-CCCEEEEeCC-CCE-----E--EEEeccCCCccccCCcCEEECCC-CCEEEEecCcccc
Confidence 36889999999 88888775 3489999987 652 1 22 211 1112236899999996 99999985310
Q ss_pred --------CCccceEEEEECCCCcEEEEEecCCCCCCCCCccceEEC----CCC-cEEEEeCCCCeEEEEcCC--CceE-
Q 020019 120 --------GNKYSAVAAYDLSTWNRLFLTQLSGPSDGKSCADDVTVD----AEG-NAYVTDVTGSKIWKVGVK--GEFL- 183 (332)
Q Consensus 120 --------~~~~~~l~~~d~~~g~~~~~~~l~~~~~~~~~~ndiavd----~dG-~lyvtd~~~~~I~~v~~~--g~~~- 183 (332)
....+.|++||++ ++......- ...|++++++ ++| .+|+++...+.|++++.+ |+..
T Consensus 141 ~~~~~~~~~~~~~~l~~~~~~-g~~~~~~~~------~~~~~~i~~~~~~d~dg~~l~v~~~~~~~i~~~~~~~~g~~~~ 213 (314)
T 1pjx_A 141 PADYTRSMQEKFGSIYCFTTD-GQMIQVDTA------FQFPNGIAVRHMNDGRPYQLIVAETPTKKLWSYDIKGPAKIEN 213 (314)
T ss_dssp TSCCCBTTSSSCEEEEEECTT-SCEEEEEEE------ESSEEEEEEEECTTSCEEEEEEEETTTTEEEEEEEEETTEEEE
T ss_pred cccccccccCCCCeEEEECCC-CCEEEeccC------CCCcceEEEecccCCCCCEEEEEECCCCeEEEEECCCCCcccc
Confidence 0112578999987 665443221 2467899999 998 599999999999999854 4432
Q ss_pred --EEecCCCCCCcccccCc-cccCeEEEccCceEEEEeCCCCeEEEEeCCCCCCccceeEEEEecCCCCCCCCeEEEeCC
Q 020019 184 --SIISSPLFTPKEWYKNL-VGLNGIVYHPDGFLIVIHTFSGNLFKIDIVDGVGEGEEIKLIRVAGGPLSFGDGLELLSP 260 (332)
Q Consensus 184 --~~~~~~~~~~p~~~~~~-~~~nGi~~~~dG~Lyva~~~~~~i~~id~~~~~~~~~~~~~v~~~g~~~~~pdGi~~~~d 260 (332)
.+...+. .. ..|++|+++++|.||+++..++.|+++++++++ ....+..+ ...|.+++++++
T Consensus 214 ~~~~~~~~~--------~~~~~p~~i~~d~~G~l~v~~~~~~~i~~~d~~~g~----~~~~~~~~---~~~~~~i~~~~d 278 (314)
T 1pjx_A 214 KKVWGHIPG--------THEGGADGMDFDEDNNLLVANWGSSHIEVFGPDGGQ----PKMRIRCP---FEKPSNLHFKPQ 278 (314)
T ss_dssp EEEEEECCC--------CSSCEEEEEEEBTTCCEEEEEETTTEEEEECTTCBS----CSEEEECS---SSCEEEEEECTT
T ss_pred ceEEEECCC--------CCCCCCCceEECCCCCEEEEEcCCCEEEEEcCCCCc----EeEEEeCC---CCCceeEEECCC
Confidence 1111110 11 457899999999999999888999999998552 34444433 257889999999
Q ss_pred Ce-EEEEeCC
Q 020019 261 TK-LVVAGNP 269 (332)
Q Consensus 261 G~-l~va~~~ 269 (332)
|+ ||+++..
T Consensus 279 g~~l~v~~~~ 288 (314)
T 1pjx_A 279 TKTIFVTEHE 288 (314)
T ss_dssp SSEEEEEETT
T ss_pred CCEEEEEeCC
Confidence 88 9999855
|
| >3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum} | Back alignment and structure |
|---|
Probab=99.59 E-value=1.5e-12 Score=119.39 Aligned_cols=236 Identities=16% Similarity=0.140 Sum_probs=142.6
Q ss_pred CCccccceEEcCCCCEEEEE-ecCCeEEEEECCC-CCCCccceeeeEEecccCc------CCCccceEEEeCCCCeEEEE
Q 020019 43 SSFFRECAKWDDSGRRFIVS-FLDGGIGQVAVPD-DYPPGTVLEEVTLVKDLEL------TGNGSLGLVLDHPRNRLLVV 114 (332)
Q Consensus 43 ~~~~pegia~d~~g~~~~~~-~~~g~I~~vd~~~-~~~~~~~~~~~~~~~~~~~------~~~~~~gi~vd~~~g~l~v~ 114 (332)
.+..|.+++++++|+.+++. ..++.|..++... +.. .........+. ....+.+++++++ |++|++
T Consensus 84 ~~~~p~~~a~spdg~~l~~~~~~~~~v~v~~~~~~g~~-----~~~~~~~~~~~~p~~~~~~~~~~~~~~spd-g~l~v~ 157 (347)
T 3hfq_A 84 PGTPPAYVAVDEARQLVYSANYHKGTAEVMKIAADGAL-----TLTDTVQHSGHGPRPEQDGSHIHYTDLTPD-NRLAVI 157 (347)
T ss_dssp ESCCCSEEEEETTTTEEEEEETTTTEEEEEEECTTSCE-----EEEEEEECCCCCSSTTCSSCCEEEEEECTT-SCEEEE
T ss_pred CCCCCEEEEECCCCCEEEEEeCCCCEEEEEEeCCCCCe-----eecceeecCCCCCCccccCCCceEEEECCC-CcEEEE
Confidence 35588999999999966555 5678888887642 321 11111111110 0124678999997 778888
Q ss_pred EeCcCCCccceEEEEECC-CCcEEEEEecCCCCCCCCCccceEECCCCc-EEEEeCCCCeEEEEcCC---CceEEEecCC
Q 020019 115 AADVFGNKYSAVAAYDLS-TWNRLFLTQLSGPSDGKSCADDVTVDAEGN-AYVTDVTGSKIWKVGVK---GEFLSIISSP 189 (332)
Q Consensus 115 ~~~~~~~~~~~l~~~d~~-~g~~~~~~~l~~~~~~~~~~ndiavd~dG~-lyvtd~~~~~I~~v~~~---g~~~~~~~~~ 189 (332)
+.. .+.+.+||.+ +++......+..+ ....|++++++|||+ +|+++...+.|..++.+ |+........
T Consensus 158 ~~~-----~~~v~~~~~~~~g~~~~~~~~~~~--~g~~p~~~~~spdg~~l~v~~~~~~~v~v~~~~~~~g~~~~~~~~~ 230 (347)
T 3hfq_A 158 DLG-----SDKVYVYNVSDAGQLSEQSVLTME--AGFGPRHLVFSPDGQYAFLAGELSSQIASLKYDTQTGAFTQLGIVK 230 (347)
T ss_dssp ETT-----TTEEEEEEECTTSCEEEEEEEECC--TTCCEEEEEECTTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEE
T ss_pred eCC-----CCEEEEEEECCCCcEEEeeeEEcC--CCCCCceEEECCCCCEEEEEeCCCCEEEEEEecCCCCceEEeeeee
Confidence 753 3578889987 5665543333211 135788999999997 99999888887666543 4433221111
Q ss_pred CCCCcccccCccccCeEEEccCc-eEEEEeCCCCeEEEEeCCC-CCCccceeEEEEecCCCCCCCCeEEEeCCCe-EEEE
Q 020019 190 LFTPKEWYKNLVGLNGIVYHPDG-FLIVIHTFSGNLFKIDIVD-GVGEGEEIKLIRVAGGPLSFGDGLELLSPTK-LVVA 266 (332)
Q Consensus 190 ~~~~p~~~~~~~~~nGi~~~~dG-~Lyva~~~~~~i~~id~~~-~~~~~~~~~~v~~~g~~~~~pdGi~~~~dG~-l~va 266 (332)
.. +........+.+++++||| +||+++...++|..++++. +.. ..+..+.. ....|.++++++||+ ||++
T Consensus 231 ~~--~~~~~~~~~~~~i~~spdG~~l~v~~~~~~~v~v~~~~~~g~~--~~~~~~~~---~~~~~~~~~~spdg~~l~v~ 303 (347)
T 3hfq_A 231 TI--PADYTAHNGAAAIRLSHDGHFLYVSNRGYNTLAVFAVTADGHL--TLIQQIST---EGDFPRDFDLDPTEAFVVVV 303 (347)
T ss_dssp SS--CTTCCSCCEEEEEEECTTSCEEEEEEETTTEEEEEEECGGGCE--EEEEEEEC---SSSCCCEEEECTTSSEEEEE
T ss_pred ec--CCCCCCCCcceeEEECCCCCEEEEEeCCCCEEEEEEECCCCcE--EEeEEEec---CCCCcCeEEECCCCCEEEEE
Confidence 11 1000122457899999999 8999999889888888762 211 12222332 224689999999986 8888
Q ss_pred eCC--ceEEE--EcCCCceEEEEEeeecCCCcccceEEEE
Q 020019 267 GNP--SARLV--ESSDGWETAAVVAKFSGPVHRLATAATV 302 (332)
Q Consensus 267 ~~~--~~~~v--~~~dg~~~~~~~~~~~~~~~~~pt~va~ 302 (332)
+.. ...+. ...+| +...+...+. +..|.++.+
T Consensus 304 ~~~~~~v~v~~~d~~tg-~l~~~~~~~~---~p~p~~~~~ 339 (347)
T 3hfq_A 304 NQNTDNATLYARDLTSG-KLSLLQKDVT---VPEGVCVRF 339 (347)
T ss_dssp ETTTTEEEEEEECTTTC-CEEEEEEEEE---CTTEEEEEE
T ss_pred EcCCCcEEEEEEeCCCC-eEEeccccee---cCCCcEEEe
Confidence 643 22222 23445 4444444433 334565554
|
| >3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus} | Back alignment and structure |
|---|
Probab=99.57 E-value=6.7e-13 Score=117.28 Aligned_cols=187 Identities=16% Similarity=0.156 Sum_probs=132.9
Q ss_pred ccccceEEcCCCCEEEEEecCCeEEEEECCCCCCCccceeeeEEecccCcCCCccceEEEeCCCCeEEEEEeCcCCCccc
Q 020019 45 FFRECAKWDDSGRRFIVSFLDGGIGQVAVPDDYPPGTVLEEVTLVKDLELTGNGSLGLVLDHPRNRLLVVAADVFGNKYS 124 (332)
Q Consensus 45 ~~pegia~d~~g~~~~~~~~~g~I~~vd~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~vd~~~g~l~v~~~~~~~~~~~ 124 (332)
.+.+|+.++. +.+|++.-..|+|.++|+.+++. ..+ .+ ++.. -..|++++. ++||+++.. .+
T Consensus 55 ~ftqGL~~~~-~~Ly~stG~~g~v~~iD~~Tgkv----~~~--~l-~~~~---FgeGit~~g--~~Ly~ltw~-----~~ 116 (268)
T 3nok_A 55 AFTQGLVFHQ-GHFFESTGHQGTLRQLSLESAQP----VWM--ER-LGNI---FAEGLASDG--ERLYQLTWT-----EG 116 (268)
T ss_dssp CCEEEEEEET-TEEEEEETTTTEEEECCSSCSSC----SEE--EE-CTTC---CEEEEEECS--SCEEEEESS-----SC
T ss_pred cccceEEEEC-CEEEEEcCCCCEEEEEECCCCcE----EeE--EC-CCCc---ceeEEEEeC--CEEEEEEcc-----CC
Confidence 3668999984 67777776678899999998873 332 23 2211 235687775 799999863 56
Q ss_pred eEEEEECCCCcEEEEEecCCCCCCCCCccceEECCCCcEEEEeCCCCeEEEEcCCC-ceEEEecCCCCCCcccccCcccc
Q 020019 125 AVAAYDLSTWNRLFLTQLSGPSDGKSCADDVTVDAEGNAYVTDVTGSKIWKVGVKG-EFLSIISSPLFTPKEWYKNLVGL 203 (332)
Q Consensus 125 ~l~~~d~~~g~~~~~~~l~~~~~~~~~~ndiavd~dG~lyvtd~~~~~I~~v~~~g-~~~~~~~~~~~~~p~~~~~~~~~ 203 (332)
.+++||+++.++...+... . .+-+++.|. +.||++| +.+.|+.+|+.. +....+....- +. ....+
T Consensus 117 ~v~V~D~~Tl~~~~ti~~~--~----eGwGLt~Dg-~~L~vSd-Gs~~l~~iDp~T~~v~~~I~V~~~--g~---~v~~l 183 (268)
T 3nok_A 117 LLFTWSGMPPQRERTTRYS--G----EGWGLCYWN-GKLVRSD-GGTMLTFHEPDGFALVGAVQVKLR--GQ---PVELI 183 (268)
T ss_dssp EEEEEETTTTEEEEEEECS--S----CCCCEEEET-TEEEEEC-SSSEEEEECTTTCCEEEEEECEET--TE---ECCCE
T ss_pred EEEEEECCcCcEEEEEeCC--C----ceeEEecCC-CEEEEEC-CCCEEEEEcCCCCeEEEEEEeCCC--Cc---ccccc
Confidence 7999999999988777762 1 234566553 4699999 589999999874 44433321111 10 23457
Q ss_pred CeEEEccCceEEEEeCCCCeEEEEeCCCCCCccceeEEEEecC----------CCCCCCCeEEEeCC-CeEEEEe
Q 020019 204 NGIVYHPDGFLIVIHTFSGNLFKIDIVDGVGEGEEIKLIRVAG----------GPLSFGDGLELLSP-TKLVVAG 267 (332)
Q Consensus 204 nGi~~~~dG~Lyva~~~~~~i~~id~~~~~~~~~~~~~v~~~g----------~~~~~pdGi~~~~d-G~l~va~ 267 (332)
|.+.+. +|+||++.+.++.|.+||+++++ .+..+.+.+ .....|+|||++++ ++|||++
T Consensus 184 NeLe~~-dG~lyanvw~s~~I~vIDp~TG~----V~~~Idl~~L~~~~~~~~~~~~~vlNGIA~dp~~~rlfVTG 253 (268)
T 3nok_A 184 NELECA-NGVIYANIWHSSDVLEIDPATGT----VVGVIDASALTRAVAGQVTNPEAVLNGIAVEPGSGRIFMTG 253 (268)
T ss_dssp EEEEEE-TTEEEEEETTCSEEEEECTTTCB----EEEEEECHHHHHHHTTTCCCTTCCEEEEEECTTTCCEEEEE
T ss_pred cccEEe-CCEEEEEECCCCeEEEEeCCCCc----EEEEEECCCCcccccccccCcCCceEEEEEcCCCCEEEEeC
Confidence 899987 88999999999999999999983 567777541 01247899999986 7799997
|
| >3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae} | Back alignment and structure |
|---|
Probab=99.55 E-value=5.6e-12 Score=113.11 Aligned_cols=223 Identities=14% Similarity=0.078 Sum_probs=154.0
Q ss_pred CCEEEEEecCCeEEEEECCCCCCCccceeeeEEecccCcCCCccceEEEeCCCCeEEEEEeCcCCCccceEEEEECCCCc
Q 020019 56 GRRFIVSFLDGGIGQVAVPDDYPPGTVLEEVTLVKDLELTGNGSLGLVLDHPRNRLLVVAADVFGNKYSAVAAYDLSTWN 135 (332)
Q Consensus 56 g~~~~~~~~~g~I~~vd~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~vd~~~g~l~v~~~~~~~~~~~~l~~~d~~~g~ 135 (332)
++++++...+++|+.+|..+++. .|.-... .+..+..+.+.++ |++|++. ...+..||+ +|+
T Consensus 5 ~~~lv~~~~~~~v~~~d~~tG~~--------~w~~~~~-~~~~~~~~~~~pd-G~ilvs~-------~~~V~~~d~-~G~ 66 (276)
T 3no2_A 5 QHLLVGGSGWNKIAIINKDTKEI--------VWEYPLE-KGWECNSVAATKA-GEILFSY-------SKGAKMITR-DGR 66 (276)
T ss_dssp CEEEEECTTCSEEEEEETTTTEE--------EEEEECC-TTCCCCEEEECTT-SCEEEEC-------BSEEEEECT-TSC
T ss_pred CcEEEeeCCCCEEEEEECCCCeE--------EEEeCCC-ccCCCcCeEECCC-CCEEEeC-------CCCEEEECC-CCC
Confidence 56677777789999999877762 2321111 1125788999996 9988843 246899999 788
Q ss_pred EEEEEecCCCCCCCCCccceEECCCCcEEEEeCC-CCeEEEEcCCCceEEEecCCC-CCCcccccCccccCeEEEccCce
Q 020019 136 RLFLTQLSGPSDGKSCADDVTVDAEGNAYVTDVT-GSKIWKVGVKGEFLSIISSPL-FTPKEWYKNLVGLNGIVYHPDGF 213 (332)
Q Consensus 136 ~~~~~~l~~~~~~~~~~ndiavd~dG~lyvtd~~-~~~I~~v~~~g~~~~~~~~~~-~~~p~~~~~~~~~nGi~~~~dG~ 213 (332)
.++.+... . ....+.+.+.++|++++++.. .++|+.++++|+....+.... ... ....+.++++.++|.
T Consensus 67 ~~W~~~~~--~--~~~~~~~~~~~dG~~lv~~~~~~~~v~~vd~~Gk~l~~~~~~~~~~~-----~~~~~~~v~~~~~G~ 137 (276)
T 3no2_A 67 ELWNIAAP--A--GCEMQTARILPDGNALVAWCGHPSTILEVNMKGEVLSKTEFETGIER-----PHAQFRQINKNKKGN 137 (276)
T ss_dssp EEEEEECC--T--TCEEEEEEECTTSCEEEEEESTTEEEEEECTTSCEEEEEEECCSCSS-----GGGSCSCCEECTTSC
T ss_pred EEEEEcCC--C--CccccccEECCCCCEEEEecCCCCEEEEEeCCCCEEEEEeccCCCCc-----ccccccCceECCCCC
Confidence 88776652 1 234567889999999999988 899999999998654432111 111 123567889999998
Q ss_pred EEEEeCCCCeEEEEeCCCCCCccceeEEEEecCCCCCCCCeEEEeCCCeEEEEeCCceE-EEEcCC-CceEEEEEe-eec
Q 020019 214 LIVIHTFSGNLFKIDIVDGVGEGEEIKLIRVAGGPLSFGDGLELLSPTKLVVAGNPSAR-LVESSD-GWETAAVVA-KFS 290 (332)
Q Consensus 214 Lyva~~~~~~i~~id~~~~~~~~~~~~~v~~~g~~~~~pdGi~~~~dG~l~va~~~~~~-~v~~~d-g~~~~~~~~-~~~ 290 (332)
+++++..+++|+.+|++ ++ .+-.+..+ ..|.++.+.++|++++++....+ +.+.++ |...-++.. .++
T Consensus 138 ~lv~~~~~~~v~~~d~~-G~----~~w~~~~~----~~~~~~~~~~~g~~~v~~~~~~~v~~~d~~tG~~~w~~~~~~~~ 208 (276)
T 3no2_A 138 YLVPLFATSEVREIAPN-GQ----LLNSVKLS----GTPFSSAFLDNGDCLVACGDAHCFVQLNLESNRIVRRVNANDIE 208 (276)
T ss_dssp EEEEETTTTEEEEECTT-SC----EEEEEECS----SCCCEEEECTTSCEEEECBTTSEEEEECTTTCCEEEEEEGGGSB
T ss_pred EEEEecCCCEEEEECCC-CC----EEEEEECC----CCccceeEcCCCCEEEEeCCCCeEEEEeCcCCcEEEEecCCCCC
Confidence 88999999999999998 62 45444433 35778999999999999754433 344555 722222221 112
Q ss_pred CCCcccceEEEE-ECCeEEEEEecC
Q 020019 291 GPVHRLATAATV-KDGRVYLNHMLG 314 (332)
Q Consensus 291 ~~~~~~pt~va~-~~g~lyv~~~~g 314 (332)
...+..|++++. .+|.+||++..|
T Consensus 209 ~~~l~~~~~~~~~~~G~i~v~~~~g 233 (276)
T 3no2_A 209 GVQLFFVAQLFPLQNGGLYICNWQG 233 (276)
T ss_dssp SCCCSEEEEEEECTTSCEEEEEECT
T ss_pred CccccccccceEcCCCCEEEEeccC
Confidence 224677899988 899999988755
|
| >3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A | Back alignment and structure |
|---|
Probab=99.52 E-value=7.4e-12 Score=115.41 Aligned_cols=242 Identities=12% Similarity=0.122 Sum_probs=143.4
Q ss_pred CCccccceEEcCCCCEEEEE-e---cCCeE--EEEECCCCCCCccceeeeEEecccCcCCCccceEEEeCCCCeEEEEEe
Q 020019 43 SSFFRECAKWDDSGRRFIVS-F---LDGGI--GQVAVPDDYPPGTVLEEVTLVKDLELTGNGSLGLVLDHPRNRLLVVAA 116 (332)
Q Consensus 43 ~~~~pegia~d~~g~~~~~~-~---~~g~I--~~vd~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~vd~~~g~l~v~~~ 116 (332)
....|..++++++|+.+|+. . ..+.| +.++.++++. + .+...+ ..+..|..+++ +...||+++.
T Consensus 48 ~~~~p~~l~~spdg~~l~~~~~~~~~~~~v~~~~~~~~~g~~-----~--~~~~~~-~~~~~p~~~~~--dg~~l~~~~~ 117 (361)
T 3scy_A 48 EVANPSYLIPSADGKFVYSVNEFSKDQAAVSAFAFDKEKGTL-----H--LLNTQK-TMGADPCYLTT--NGKNIVTANY 117 (361)
T ss_dssp ECSCCCSEEECTTSSEEEEEECCSSTTCEEEEEEEETTTTEE-----E--EEEEEE-CSSSCEEEEEE--CSSEEEEEET
T ss_pred cCCCCceEEECCCCCEEEEEEccCCCCCcEEEEEEeCCCCcE-----E--EeeEec-cCCCCcEEEEE--CCCEEEEEEC
Confidence 34578899999999966655 3 23666 5666554542 1 111111 12236788888 3367888874
Q ss_pred CcCCCccceEEEEECCCC-cEE---EEEecCCCC-----CCCCCccceEECCCCc-EEEEeCCCCeEEEEc--CCC----
Q 020019 117 DVFGNKYSAVAAYDLSTW-NRL---FLTQLSGPS-----DGKSCADDVTVDAEGN-AYVTDVTGSKIWKVG--VKG---- 180 (332)
Q Consensus 117 ~~~~~~~~~l~~~d~~~g-~~~---~~~~l~~~~-----~~~~~~ndiavd~dG~-lyvtd~~~~~I~~v~--~~g---- 180 (332)
. .+.+.+|+.++. ... ......+.. +....+++++++|+|+ +|+++...+.|+.++ ..+
T Consensus 118 ~-----~~~v~~~~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~v~v~~~~~~~~~~~ 192 (361)
T 3scy_A 118 S-----GGSITVFPIGQDGALLPASDVIEFKGSGPDKERQTMPHLHCVRITPDGKYLLADDLGTDQIHKFNINPNANADN 192 (361)
T ss_dssp T-----TTEEEEEEBCTTSCBCSCSEEEECCCCCSCTTTCSSCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTCCTTT
T ss_pred C-----CCEEEEEEeCCCCcCcccceeEEccCCCCCccccCCCcceEEEECCCCCEEEEEeCCCCEEEEEEEcCCCCccc
Confidence 3 356888988643 221 112221110 1124568899999997 999998888777664 333
Q ss_pred -c-eEE-----EecCCCCCCcccccCccccCeEEEccCc-eEEEEeCCCCeEEEEeCCCCCCccceeEEEEecCCCCCCC
Q 020019 181 -E-FLS-----IISSPLFTPKEWYKNLVGLNGIVYHPDG-FLIVIHTFSGNLFKIDIVDGVGEGEEIKLIRVAGGPLSFG 252 (332)
Q Consensus 181 -~-~~~-----~~~~~~~~~p~~~~~~~~~nGi~~~~dG-~Lyva~~~~~~i~~id~~~~~~~~~~~~~v~~~g~~~~~p 252 (332)
+ +.. ..... ...+|.+++|+||| .||+++..+++|..+++++++. ..+..+.........|
T Consensus 193 ~~~l~~~~~~~~~~~~---------~~~~~~~~~~spdg~~l~v~~~~~~~v~v~~~~~g~~--~~~~~~~~~~~~~~~~ 261 (361)
T 3scy_A 193 KEKFLTKGTPEAFKVA---------PGSGPRHLIFNSDGKFAYLINEIGGTVIAFRYADGML--DEIQTVAADTVNAQGS 261 (361)
T ss_dssp CCCCEEEEEEEEEECC---------TTCCEEEEEECTTSSEEEEEETTTCEEEEEEEETTEE--EEEEEEESCSSCCCCE
T ss_pred ccceeecccccceecC---------CCCCCeEEEEcCCCCEEEEEcCCCCeEEEEEecCCce--EEeEEEecCCCCCCCc
Confidence 2 211 11111 23467899999999 8999998899999888876521 1122222211223457
Q ss_pred CeEEEeCCCe-EEEEeCC--c-eEEEEc--CCCceEEEEEeeecCCCcccceEEEE-EC-CeEEEEEecC
Q 020019 253 DGLELLSPTK-LVVAGNP--S-ARLVES--SDGWETAAVVAKFSGPVHRLATAATV-KD-GRVYLNHMLG 314 (332)
Q Consensus 253 dGi~~~~dG~-l~va~~~--~-~~~v~~--~dg~~~~~~~~~~~~~~~~~pt~va~-~~-g~lyv~~~~g 314 (332)
.++++++||+ ||+++.. . ..+... .+| +. +....+.. ...|.++++ .+ +.||+++...
T Consensus 262 ~~i~~spdg~~l~v~~~~~~~~i~v~~~~~~~g-~~-~~~~~~~~--g~~~~~~~~spdg~~l~~~~~~~ 327 (361)
T 3scy_A 262 GDIHLSPDGKYLYASNRLKADGVAIFKVDETNG-TL-TKVGYQLT--GIHPRNFIITPNGKYLLVACRDT 327 (361)
T ss_dssp EEEEECTTSSEEEEEECSSSCEEEEEEECTTTC-CE-EEEEEEEC--SSCCCEEEECTTSCEEEEEETTT
T ss_pred ccEEECCCCCEEEEECCCCCCEEEEEEEcCCCC-cE-EEeeEecC--CCCCceEEECCCCCEEEEEECCC
Confidence 7999999987 7787644 2 233222 345 32 23333332 346889999 44 4688876543
|
| >2ism_A Putative oxidoreductase; BL41XU spring-8, bladed beta-propellor, glucose dehydrogenas structural genomics, NPPSFA; 1.90A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.52 E-value=6.5e-13 Score=123.46 Aligned_cols=203 Identities=14% Similarity=0.161 Sum_probs=125.6
Q ss_pred ccceEEEeCCCCeEEEEEeCcCCCccceEEEEECCCCcEEEEEecCCCCCCCCCccceEECCC----CcEEEEeCCC---
Q 020019 98 GSLGLVLDHPRNRLLVVAADVFGNKYSAVAAYDLSTWNRLFLTQLSGPSDGKSCADDVTVDAE----GNAYVTDVTG--- 170 (332)
Q Consensus 98 ~~~gi~vd~~~g~l~v~~~~~~~~~~~~l~~~d~~~g~~~~~~~l~~~~~~~~~~ndiavd~d----G~lyvtd~~~--- 170 (332)
.|.+|+++++ |+|||++.. ++|.+++ +++......++-...+...|++|+++|+ |.|||+++..
T Consensus 32 ~P~~ia~~pd-G~l~V~e~~------g~I~~i~--~g~~~~~~~~~v~~~g~~~p~gia~~pdf~~~g~lYv~~~~~~~~ 102 (352)
T 2ism_A 32 VPWALAFLPD-GGMLIAERP------GRIRLFR--EGRLSTYAELSVYHRGESGLLGLALHPRFPQEPYVYAYRTVAEGG 102 (352)
T ss_dssp CEEEEEECTT-SCEEEEETT------TEEEEEE--TTEEEEEEECCCCCSTTCSEEEEEECTTTTTSCEEEEEEEECTTS
T ss_pred CceEEEEcCC-CeEEEEeCC------CeEEEEE--CCCccEeecceEeecCCCCceeEEECCCCCCCCEEEEEEecCCCC
Confidence 7999999997 999999863 6788888 4554433344211223568999999998 7899998864
Q ss_pred --CeEEEEcCCCc-e---EEEec-CCCCCCcccccCccccCeEEEccCceEEEEeCC-------------CCeEEEEeCC
Q 020019 171 --SKIWKVGVKGE-F---LSIIS-SPLFTPKEWYKNLVGLNGIVYHPDGFLIVIHTF-------------SGNLFKIDIV 230 (332)
Q Consensus 171 --~~I~~v~~~g~-~---~~~~~-~~~~~~p~~~~~~~~~nGi~~~~dG~Lyva~~~-------------~~~i~~id~~ 230 (332)
++|++++.++. . ..++. .+.. + ...-.+++|++++||+||++... .++|+||+++
T Consensus 103 ~~~~v~r~~~~~~~~~~~~~l~~~~p~~--~---~~~h~~~~l~~~pdG~Lyv~~G~~~~~~~~~d~~~~~g~I~ri~~d 177 (352)
T 2ism_A 103 LRNQVVRLRHLGERGVLDRVVLDGIPAR--P---HGLHSGGRIAFGPDGMLYVTTGEVYERELAQDLASLGGKILRLTPE 177 (352)
T ss_dssp SEEEEEEEEECSSCEEEEEEEEEEECCC--T---TCCCCCCCEEECTTSCEEEECCCTTCGGGGGCTTCSSSEEEEECTT
T ss_pred CccEEEEEEeCCCCcCceEEEEEeCCCC--C---CCCcCCceEEECCCCCEEEEECCCCCCccccCCCCCceEEEEEcCC
Confidence 78999987742 1 12221 1100 0 01235789999999999999742 3789999987
Q ss_pred CCCCcc--------ceeEEEEecCCCCCCCCeEEEeC-CCeEEEEeCCceE--------EEEcCCC----ceEEE-----
Q 020019 231 DGVGEG--------EEIKLIRVAGGPLSFGDGLELLS-PTKLVVAGNPSAR--------LVESSDG----WETAA----- 284 (332)
Q Consensus 231 ~~~~~~--------~~~~~v~~~g~~~~~pdGi~~~~-dG~l~va~~~~~~--------~v~~~dg----~~~~~----- 284 (332)
+.-..+ ...+.+.. .+..|.||++++ +|+||++++...+ +-....| |....
T Consensus 178 G~~p~~npf~~~~~~~~~i~a~---G~rnp~g~a~d~~~g~l~v~d~g~~~~~~~~~dei~~i~~G~nyGwp~~~g~~~~ 254 (352)
T 2ism_A 178 GEPAPGNPFLGRRGARPEVYSL---GHRNPQGLAWHPKTGELFSSEHGPSGEQGYGHDEVNLIVPGGNYGWPRVVGRGND 254 (352)
T ss_dssp SSBCTTCTTTTCTTSCTTEEEE---CCSEECCCEECTTTCCEEEEEECC------CCCEEEEECTTCBCCTTTCCSCCCC
T ss_pred CCCCCCCcccCCCCCCccEEEE---cCCCcccEEEECCCCCEEEEEcCCCCCCCCCCeEEEEeccCCcCCCCcccCCCCC
Confidence 410000 01122222 346799999999 7999999854332 2222222 11000
Q ss_pred ---EEeeecCCCcccceEEEEECCeEEEEEecCccc
Q 020019 285 ---VVAKFSGPVHRLATAATVKDGRVYLNHMLGFGY 317 (332)
Q Consensus 285 ---~~~~~~~~~~~~pt~va~~~g~lyv~~~~g~~~ 317 (332)
......-+....|+++++.+|.+||+...+..+
T Consensus 255 ~~~~~p~~~~~~~~ap~G~~~~~G~l~v~~~~~~~v 290 (352)
T 2ism_A 255 PRYRDPLYFWPQGFPPGNLAFFRGDLYVAGLRGQAL 290 (352)
T ss_dssp TTSCCCSEECTTCCCEEEEEEETTEEEEEETTTTEE
T ss_pred CCCcCCeEecCCCCCCcceEEECCEEEEEECCCCEE
Confidence 000000012346888999889999987666543
|
| >1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3 | Back alignment and structure |
|---|
Probab=99.51 E-value=4.9e-11 Score=110.58 Aligned_cols=220 Identities=14% Similarity=0.172 Sum_probs=151.6
Q ss_pred ccccceEEcCCCCEE-EEEecCCeEEEEECCCCCCCccceeeeEEecccCcCCCccceEEEeCCCCeEEEEEeCcCCCcc
Q 020019 45 FFRECAKWDDSGRRF-IVSFLDGGIGQVAVPDDYPPGTVLEEVTLVKDLELTGNGSLGLVLDHPRNRLLVVAADVFGNKY 123 (332)
Q Consensus 45 ~~pegia~d~~g~~~-~~~~~~g~I~~vd~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~vd~~~g~l~v~~~~~~~~~~ 123 (332)
..+.+++++++|+.+ ++...++.|..++..+++. . ..+... ..+.+++++++..+||++... .
T Consensus 32 ~~~~~~~~s~dg~~l~~~~~~d~~i~v~d~~~~~~----~---~~~~~~----~~v~~~~~spdg~~l~~~~~~-----~ 95 (391)
T 1l0q_A 32 SNPMGAVISPDGTKVYVANAHSNDVSIIDTATNNV----I---ATVPAG----SSPQGVAVSPDGKQVYVTNMA-----S 95 (391)
T ss_dssp SSEEEEEECTTSSEEEEEEGGGTEEEEEETTTTEE----E---EEEECS----SSEEEEEECTTSSEEEEEETT-----T
T ss_pred CCcceEEECCCCCEEEEECCCCCeEEEEECCCCeE----E---EEEECC----CCccceEECCCCCEEEEEECC-----C
Confidence 357899999999865 4556789999999876652 1 122111 267899999974557777642 3
Q ss_pred ceEEEEECCCCcEEEEEecCCCCCCCCCccceEECCCCc-EEEEeCCCCeEEEEcCC-CceEEEecCCCCCCcccccCcc
Q 020019 124 SAVAAYDLSTWNRLFLTQLSGPSDGKSCADDVTVDAEGN-AYVTDVTGSKIWKVGVK-GEFLSIISSPLFTPKEWYKNLV 201 (332)
Q Consensus 124 ~~l~~~d~~~g~~~~~~~l~~~~~~~~~~ndiavd~dG~-lyvtd~~~~~I~~v~~~-g~~~~~~~~~~~~~p~~~~~~~ 201 (332)
+.|.+||.++++....... ...+.+++++++|+ +|++....+.|+.+|.. ++....+.. ..
T Consensus 96 ~~v~v~d~~~~~~~~~~~~------~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~-----------~~ 158 (391)
T 1l0q_A 96 STLSVIDTTSNTVAGTVKT------GKSPLGLALSPDGKKLYVTNNGDKTVSVINTVTKAVINTVSV-----------GR 158 (391)
T ss_dssp TEEEEEETTTTEEEEEEEC------SSSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEEC-----------CS
T ss_pred CEEEEEECCCCeEEEEEeC------CCCcceEEECCCCCEEEEEeCCCCEEEEEECCCCcEEEEEec-----------CC
Confidence 5799999999887655443 24578999999986 78999999999999976 444433321 12
Q ss_pred ccCeEEEccCc-eEEEEeCCCCeEEEEeCCCCCCccceeEEEEecCCCCCCCCeEEEeCCCe-EEEEeC----CceEEEE
Q 020019 202 GLNGIVYHPDG-FLIVIHTFSGNLFKIDIVDGVGEGEEIKLIRVAGGPLSFGDGLELLSPTK-LVVAGN----PSARLVE 275 (332)
Q Consensus 202 ~~nGi~~~~dG-~Lyva~~~~~~i~~id~~~~~~~~~~~~~v~~~g~~~~~pdGi~~~~dG~-l~va~~----~~~~~v~ 275 (332)
.+.++++++|| .||++....++|+.+|+.++ +.+..+... ..+.++++.++|+ ||++.. ....+..
T Consensus 159 ~~~~~~~~~dg~~l~~~~~~~~~v~~~d~~~~----~~~~~~~~~----~~~~~~~~~~~g~~l~~~~~~~~~~~v~~~d 230 (391)
T 1l0q_A 159 SPKGIAVTPDGTKVYVANFDSMSISVIDTVTN----SVIDTVKVE----AAPSGIAVNPEGTKAYVTNVDKYFNTVSMID 230 (391)
T ss_dssp SEEEEEECTTSSEEEEEETTTTEEEEEETTTT----EEEEEEECS----SEEEEEEECTTSSEEEEEEECSSCCEEEEEE
T ss_pred CcceEEECCCCCEEEEEeCCCCEEEEEECCCC----eEEEEEecC----CCccceEECCCCCEEEEEecCcCCCcEEEEE
Confidence 45799999999 89999999999999999876 234434322 4578899999975 666652 2334444
Q ss_pred cCCCceEEEEEeeecCCCcccceEEEE-E-CCeEEEEE
Q 020019 276 SSDGWETAAVVAKFSGPVHRLATAATV-K-DGRVYLNH 311 (332)
Q Consensus 276 ~~dg~~~~~~~~~~~~~~~~~pt~va~-~-~g~lyv~~ 311 (332)
..++ + ....+.. ...|.++++ . ++.||++.
T Consensus 231 ~~~~-~---~~~~~~~--~~~~~~~~~s~dg~~l~~s~ 262 (391)
T 1l0q_A 231 TGTN-K---ITARIPV--GPDPAGIAVTPDGKKVYVAL 262 (391)
T ss_dssp TTTT-E---EEEEEEC--CSSEEEEEECTTSSEEEEEE
T ss_pred CCCC-e---EEEEEec--CCCccEEEEccCCCEEEEEc
Confidence 4555 2 3333332 234677888 3 44677764
|
| >3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus} | Back alignment and structure |
|---|
Probab=99.51 E-value=4.2e-12 Score=120.64 Aligned_cols=216 Identities=12% Similarity=0.065 Sum_probs=126.7
Q ss_pred CCccccceEEcCCCCEEEEE-e---------cCCeEEEEECCCCCCCccceeeeEEecc-cC-c-CCCccceEEEeCCCC
Q 020019 43 SSFFRECAKWDDSGRRFIVS-F---------LDGGIGQVAVPDDYPPGTVLEEVTLVKD-LE-L-TGNGSLGLVLDHPRN 109 (332)
Q Consensus 43 ~~~~pegia~d~~g~~~~~~-~---------~~g~I~~vd~~~~~~~~~~~~~~~~~~~-~~-~-~~~~~~gi~vd~~~g 109 (332)
.+..| ++++++||+.+|+. . .++.|.+||..+.+ +.. ++.-. +. . .+..|.+++++++..
T Consensus 117 vG~~P-gia~SpDgk~lyVan~~~~~~~~G~~~~~VsviD~~t~~----vv~--~I~v~g~~r~~~g~~P~~~~~spDGk 189 (426)
T 3c75_H 117 GGFLP-HPVAAEDGSFFAQASTVFERIARGKRTDYVEVFDPVTFL----PIA--DIELPDAPRFLVGTYQWMNALTPDNK 189 (426)
T ss_dssp ECSSC-EEEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTCC----EEE--EEEETTCCCCCBSCCGGGSEECTTSS
T ss_pred CCCCC-ceEECCCCCEEEEEeccccccccCCCCCEEEEEECCCCc----EEE--EEECCCccccccCCCcceEEEcCCCC
Confidence 35689 99999999865554 3 35689999988776 222 22111 11 0 134789999999866
Q ss_pred eEEEEEeCcCCCccceEEEEECCCCcEEEEEecCCCCCCCCCccc----eEECCCCcEEEEeCC----------------
Q 020019 110 RLLVVAADVFGNKYSAVAAYDLSTWNRLFLTQLSGPSDGKSCADD----VTVDAEGNAYVTDVT---------------- 169 (332)
Q Consensus 110 ~l~v~~~~~~~~~~~~l~~~d~~~g~~~~~~~l~~~~~~~~~~nd----iavd~dG~lyvtd~~---------------- 169 (332)
+|||++.. ..+.|.++|.+++++...+.+.+. ....|.+ +++.++|++++.+..
T Consensus 190 ~lyV~n~~----~~~~VsVID~~t~kvv~~I~v~g~--~~~~p~g~~~~v~~~~dG~~~~V~~~~~~v~~~~~~~~~v~~ 263 (426)
T 3c75_H 190 NLLFYQFS----PAPAVGVVDLEGKTFDRMLDVPDC--YHIFPASPTVFYMNCRDGSLARVDFADGETKVTNTEVFHTED 263 (426)
T ss_dssp EEEEEECS----SSCEEEEEETTTTEEEEEEECCSE--EEEEEEETTEEEEEETTSSEEEEECCTTCCEEEECCCCSCTT
T ss_pred EEEEEecC----CCCeEEEEECCCCeEEEEEEcCCc--eeeccCCCcEEEEEcCCCCEEEEECCCCcEEEEeeeeeccCC
Confidence 89998742 135689999999988877766210 0111222 344444442222212
Q ss_pred ---------------------CCeEEEEcCCCceEEEecCCCCCCcccccCccccCe---EEEccCc-eEEEEeC-----
Q 020019 170 ---------------------GSKIWKVGVKGEFLSIISSPLFTPKEWYKNLVGLNG---IVYHPDG-FLIVIHT----- 219 (332)
Q Consensus 170 ---------------------~~~I~~v~~~g~~~~~~~~~~~~~p~~~~~~~~~nG---i~~~~dG-~Lyva~~----- 219 (332)
.+.|+.+|..+....+...-.............|.| +++++|| +|||++.
T Consensus 264 ~p~~~~~~~~~dg~~~~~~s~~g~V~ViD~~~~~~~v~~~~~~~~~~~i~~g~~p~g~~~va~s~dg~rlyVa~~~~~~g 343 (426)
T 3c75_H 264 ELLINHPAFSLRSGRLVWPTYTGKIFQADLTAEGATFRAPIEALTEAERADDWRPGGWQQTAYHRQSDRIYLLVDQRDEW 343 (426)
T ss_dssp SCBCSCCEECTTTCEEEEEBTTSEEEEEEECSSCEEECCCEESSCTTTGGGTEEECSSSCEEEEGGGTEEEEEEEECCTT
T ss_pred CceeeEeeecCCCCEEEEEeCCCcEEEEeccCCceEEeeeeeeccccccccccccCCceeeEEcCCCCEEEEEecccccc
Confidence 234444444322111110000000000011122444 9999998 9999975
Q ss_pred ----CCCeEEEEeCCCCCCccceeEEEEecCCCCCCCCeEEEeCCCe--EEEEeCC--ceEEEEcCCC
Q 020019 220 ----FSGNLFKIDIVDGVGEGEEIKLIRVAGGPLSFGDGLELLSPTK--LVVAGNP--SARLVESSDG 279 (332)
Q Consensus 220 ----~~~~i~~id~~~~~~~~~~~~~v~~~g~~~~~pdGi~~~~dG~--l~va~~~--~~~~v~~~dg 279 (332)
.+++|+.||+.+.+ .+..+.++ ..|+||++++||+ +|+++.. ...+++..++
T Consensus 344 thk~~s~~VsVID~~T~k----vv~~I~vg----~~P~gia~spDg~~~lyv~n~~s~~VsVID~~t~ 403 (426)
T 3c75_H 344 KHKAASRFVVVLNAETGE----RINKIELG----HEIDSINVSQDAEPLLYALSAGTQTLHIYDAATG 403 (426)
T ss_dssp CTTSCEEEEEEEETTTCC----EEEEEEEE----EEECEEEECCSSSCEEEEEETTTTEEEEEETTTC
T ss_pred cccCCCCEEEEEECCCCe----EEEEEECC----CCcCeEEEccCCCEEEEEEcCCCCeEEEEECCCC
Confidence 24679999999873 67777765 3699999999987 6666632 3334455555
|
| >3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A | Back alignment and structure |
|---|
Probab=99.50 E-value=3.3e-12 Score=112.76 Aligned_cols=181 Identities=10% Similarity=0.059 Sum_probs=126.6
Q ss_pred cceEEEeCCCCeEEEEEeCcCCCccceEEEEECCCCcEEEEEecCCCCCCCCCccceEECCCCcEEEEeCCCCeEEEEcC
Q 020019 99 SLGLVLDHPRNRLLVVAADVFGNKYSAVAAYDLSTWNRLFLTQLSGPSDGKSCADDVTVDAEGNAYVTDVTGSKIWKVGV 178 (332)
Q Consensus 99 ~~gi~vd~~~g~l~v~~~~~~~~~~~~l~~~d~~~g~~~~~~~l~~~~~~~~~~ndiavd~dG~lyvtd~~~~~I~~v~~ 178 (332)
.+||.++ + ++||++.... +.+.|.++|+++|++.....++ ...|.-|++++. ++||+.++..+.++++|+
T Consensus 45 tqGL~~~-~-~~LyestG~~---g~S~v~~vD~~Tgkv~~~~~l~----~~~FgeGit~~g-~~ly~ltw~~~~v~v~D~ 114 (262)
T 3nol_A 45 TEGFFYR-N-GYFYESTGLN---GRSSIRKVDIESGKTLQQIELG----KRYFGEGISDWK-DKIVGLTWKNGLGFVWNI 114 (262)
T ss_dssp EEEEEEE-T-TEEEEEEEET---TEEEEEEECTTTCCEEEEEECC----TTCCEEEEEEET-TEEEEEESSSSEEEEEET
T ss_pred cceEEEE-C-CEEEEECCCC---CCceEEEEECCCCcEEEEEecC----CccceeEEEEeC-CEEEEEEeeCCEEEEEEC
Confidence 4899998 4 8999998642 2457999999999998888773 245777888875 479999999999999998
Q ss_pred C-CceEEEecCCCCCCcccccCccccCeEEEccCc-eEEEEeCCCCeEEEEeCCCCCCccceeEEEEec--CCCCCCCCe
Q 020019 179 K-GEFLSIISSPLFTPKEWYKNLVGLNGIVYHPDG-FLIVIHTFSGNLFKIDIVDGVGEGEEIKLIRVA--GGPLSFGDG 254 (332)
Q Consensus 179 ~-g~~~~~~~~~~~~~p~~~~~~~~~nGi~~~~dG-~Lyva~~~~~~i~~id~~~~~~~~~~~~~v~~~--g~~~~~pdG 254 (332)
+ .+....+..+. ..-|++ +|| .||+++. +++|+.+|+.+.+ .+..+.+. |.++..+..
T Consensus 115 ~t~~~~~ti~~~~-----------eG~glt--~dg~~L~~SdG-s~~i~~iDp~T~~----v~~~I~V~~~g~~~~~lNE 176 (262)
T 3nol_A 115 RNLRQVRSFNYDG-----------EGWGLT--HNDQYLIMSDG-TPVLRFLDPESLT----PVRTITVTAHGEELPELNE 176 (262)
T ss_dssp TTCCEEEEEECSS-----------CCCCEE--ECSSCEEECCS-SSEEEEECTTTCS----EEEEEECEETTEECCCEEE
T ss_pred ccCcEEEEEECCC-----------CceEEe--cCCCEEEEECC-CCeEEEEcCCCCe----EEEEEEeccCCccccccce
Confidence 6 45443332210 123555 566 9999985 8999999999873 56666653 234455667
Q ss_pred EEEeCCCeEEEEeCCce--EEEEcCCCceEEEEEeeecC-----------CCcccceEEEE--ECCeEEEEEe
Q 020019 255 LELLSPTKLVVAGNPSA--RLVESSDGWETAAVVAKFSG-----------PVHRLATAATV--KDGRVYLNHM 312 (332)
Q Consensus 255 i~~~~dG~l~va~~~~~--~~v~~~dg~~~~~~~~~~~~-----------~~~~~pt~va~--~~g~lyv~~~ 312 (332)
+++. +|+||+...... .++...+| ++++.+.. +....|.++|+ .+++|||+..
T Consensus 177 Le~~-~G~lyan~w~~~~I~vIDp~tG----~V~~~Id~~~L~~~~~~~~~~~~vlNGIA~dp~~~~lfVTGK 244 (262)
T 3nol_A 177 LEWV-DGEIFANVWQTNKIVRIDPETG----KVTGIIDLNGILAEAGPLPSPIDVLNGIAWDKEHHRLFVTGK 244 (262)
T ss_dssp EEEE-TTEEEEEETTSSEEEEECTTTC----BEEEEEECTTGGGGSCSCCSSCCCEEEEEEETTTTEEEEEET
T ss_pred eEEE-CCEEEEEEccCCeEEEEECCCC----cEEEEEECCcCccccccccCcCCceEEEEEcCCCCEEEEECC
Confidence 8886 799999875433 33445566 34333332 22356789999 4689999754
|
| >3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans} | Back alignment and structure |
|---|
Probab=99.49 E-value=1.4e-11 Score=111.70 Aligned_cols=223 Identities=13% Similarity=0.072 Sum_probs=137.4
Q ss_pred EEcCCCCE-EEEEecCCeEEEEECCCCCCCccceeeeEEecccCcCCCccceEEEeCCCCeEEEEEeCcCCCccceEEEE
Q 020019 51 KWDDSGRR-FIVSFLDGGIGQVAVPDDYPPGTVLEEVTLVKDLELTGNGSLGLVLDHPRNRLLVVAADVFGNKYSAVAAY 129 (332)
Q Consensus 51 a~d~~g~~-~~~~~~~g~I~~vd~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~vd~~~g~l~v~~~~~~~~~~~~l~~~ 129 (332)
.++.+++. |+++..+++|..+|..+++. . .....+ ...+ +++++++...+|++... .+.|++|
T Consensus 4 ~~~~~~~~~~v~~~~~~~v~~~d~~~~~~----~---~~~~~~---~~~~-~~~~s~dg~~l~~~~~~-----~~~i~~~ 67 (331)
T 3u4y_A 4 MFQTTSNFGIVVEQHLRRISFFSTDTLEI----L---NQITLG---YDFV-DTAITSDCSNVVVTSDF-----CQTLVQI 67 (331)
T ss_dssp ---CCCCEEEEEEGGGTEEEEEETTTCCE----E---EEEECC---CCEE-EEEECSSSCEEEEEEST-----TCEEEEE
T ss_pred eEcCCCCEEEEEecCCCeEEEEeCcccce----e---eeEEcc---CCcc-eEEEcCCCCEEEEEeCC-----CCeEEEE
Confidence 44555554 55667789999999887762 1 122111 2256 99999974458888763 3579999
Q ss_pred ECCCCcE-EEEEecCCCCCCCCCccc-eEECCCCc-EEEEeCCCC--eEEEEcCC-CceEEEecCCCCCCcccccCcccc
Q 020019 130 DLSTWNR-LFLTQLSGPSDGKSCADD-VTVDAEGN-AYVTDVTGS--KIWKVGVK-GEFLSIISSPLFTPKEWYKNLVGL 203 (332)
Q Consensus 130 d~~~g~~-~~~~~l~~~~~~~~~~nd-iavd~dG~-lyvtd~~~~--~I~~v~~~-g~~~~~~~~~~~~~p~~~~~~~~~ 203 (332)
|+++++. ...... ...|.. ++++|+|+ +|+++...+ .|+.++.+ ++....+.. ...+
T Consensus 68 d~~~~~~~~~~~~~------~~~~~~~~~~s~dg~~l~~~~~~~~~~~i~v~d~~~~~~~~~~~~-----------~~~~ 130 (331)
T 3u4y_A 68 ETQLEPPKVVAIQE------GQSSMADVDITPDDQFAVTVTGLNHPFNMQSYSFLKNKFISTIPI-----------PYDA 130 (331)
T ss_dssp ECSSSSCEEEEEEE------CSSCCCCEEECTTSSEEEECCCSSSSCEEEEEETTTTEEEEEEEC-----------CTTE
T ss_pred ECCCCceeEEeccc------CCCCccceEECCCCCEEEEecCCCCcccEEEEECCCCCeEEEEEC-----------CCCc
Confidence 9999886 443332 234566 99999997 664333334 89999986 444433321 1346
Q ss_pred CeEEEccCc-eEEEEeCCCCe-EEEEeCCCCCCccceeEEEEecCCCCCCCCeEEEeCCCe-EEEEeCC--ceEEEEcCC
Q 020019 204 NGIVYHPDG-FLIVIHTFSGN-LFKIDIVDGVGEGEEIKLIRVAGGPLSFGDGLELLSPTK-LVVAGNP--SARLVESSD 278 (332)
Q Consensus 204 nGi~~~~dG-~Lyva~~~~~~-i~~id~~~~~~~~~~~~~v~~~g~~~~~pdGi~~~~dG~-l~va~~~--~~~~v~~~d 278 (332)
++++++||| .||+++...++ |+.++++..... ......... ....|.++++++||+ +|+++.. ...++...+
T Consensus 131 ~~~~~spdg~~l~~~~~~~~~~i~~~~~~~~g~~-~~~~~~~~~--~~~~~~~~~~spdg~~l~v~~~~~~~v~v~d~~~ 207 (331)
T 3u4y_A 131 VGIAISPNGNGLILIDRSSANTVRRFKIDADGVL-FDTGQEFIS--GGTRPFNITFTPDGNFAFVANLIGNSIGILETQN 207 (331)
T ss_dssp EEEEECTTSSCEEEEEETTTTEEEEEEECTTCCE-EEEEEEEEC--SSSSEEEEEECTTSSEEEEEETTTTEEEEEECSS
T ss_pred cceEECCCCCEEEEEecCCCceEEEEEECCCCcE-eecCCcccc--CCCCccceEECCCCCEEEEEeCCCCeEEEEECCC
Confidence 899999999 89999988777 776666532110 001111111 224689999999987 8888743 344445555
Q ss_pred CceEEEEEeeecCCCcccceEEEE-ECC-eEEEEEe
Q 020019 279 GWETAAVVAKFSGPVHRLATAATV-KDG-RVYLNHM 312 (332)
Q Consensus 279 g~~~~~~~~~~~~~~~~~pt~va~-~~g-~lyv~~~ 312 (332)
+.. .+....+.. ...|.++++ .++ .||+++.
T Consensus 208 ~~~-~~~~~~~~~--~~~~~~~~~spdg~~l~v~~~ 240 (331)
T 3u4y_A 208 PEN-ITLLNAVGT--NNLPGTIVVSRDGSTVYVLTE 240 (331)
T ss_dssp TTS-CEEEEEEEC--SSCCCCEEECTTSSEEEEECS
T ss_pred Ccc-cceeeeccC--CCCCceEEECCCCCEEEEEEc
Confidence 622 111333332 356788888 444 5888654
|
| >3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris} | Back alignment and structure |
|---|
Probab=99.49 E-value=1.5e-11 Score=107.67 Aligned_cols=186 Identities=14% Similarity=0.102 Sum_probs=127.3
Q ss_pred ccceEEEeCCCCeEEEEEeCcCCCccceEEEEECCCCcEEEEEecCCCCCCCCCccceEECCCCcEEEEeCCCCeEEEEc
Q 020019 98 GSLGLVLDHPRNRLLVVAADVFGNKYSAVAAYDLSTWNRLFLTQLSGPSDGKSCADDVTVDAEGNAYVTDVTGSKIWKVG 177 (332)
Q Consensus 98 ~~~gi~vd~~~g~l~v~~~~~~~~~~~~l~~~d~~~g~~~~~~~l~~~~~~~~~~ndiavd~dG~lyvtd~~~~~I~~v~ 177 (332)
-.+|+++++ ++||++.... +.+.|.++|+++|++...+.++ ...+.-+++++. ++||+.++..+.++++|
T Consensus 22 ftqGL~~~~--~~LyestG~~---g~S~v~~vD~~tgkv~~~~~l~----~~~fgeGi~~~~-~~ly~ltw~~~~v~v~D 91 (243)
T 3mbr_X 22 FTEGLFYLR--GHLYESTGET---GRSSVRKVDLETGRILQRAEVP----PPYFGAGIVAWR-DRLIQLTWRNHEGFVYD 91 (243)
T ss_dssp CEEEEEEET--TEEEEEECCT---TSCEEEEEETTTCCEEEEEECC----TTCCEEEEEEET-TEEEEEESSSSEEEEEE
T ss_pred ccccEEEEC--CEEEEECCCC---CCceEEEEECCCCCEEEEEeCC----CCcceeEEEEeC-CEEEEEEeeCCEEEEEE
Confidence 457999996 8999998642 2457999999999999888773 245778888874 57999999999999999
Q ss_pred CC-CceEEEecCCCCCCcccccCccccCeEEEccCc-eEEEEeCCCCeEEEEeCCCCCCccceeEEEEec--CCCCCCCC
Q 020019 178 VK-GEFLSIISSPLFTPKEWYKNLVGLNGIVYHPDG-FLIVIHTFSGNLFKIDIVDGVGEGEEIKLIRVA--GGPLSFGD 253 (332)
Q Consensus 178 ~~-g~~~~~~~~~~~~~p~~~~~~~~~nGi~~~~dG-~Lyva~~~~~~i~~id~~~~~~~~~~~~~v~~~--g~~~~~pd 253 (332)
++ .+....+..+ ..|..+..|| +||+++. +++|+.+|+.+.+ .+..+.+. +.++..+.
T Consensus 92 ~~tl~~~~ti~~~-------------~~Gwglt~dg~~L~vSdg-s~~l~~iDp~t~~----~~~~I~V~~~g~~~~~lN 153 (243)
T 3mbr_X 92 LATLTPRARFRYP-------------GEGWALTSDDSHLYMSDG-TAVIRKLDPDTLQ----QVGSIKVTAGGRPLDNLN 153 (243)
T ss_dssp TTTTEEEEEEECS-------------SCCCEEEECSSCEEEECS-SSEEEEECTTTCC----EEEEEECEETTEECCCEE
T ss_pred CCcCcEEEEEeCC-------------CCceEEeeCCCEEEEECC-CCeEEEEeCCCCe----EEEEEEEccCCcccccce
Confidence 86 4444333211 1234444566 9999995 8999999999873 55666653 23345566
Q ss_pred eEEEeCCCeEEEEeCCc--eEEEEcCCCceEEEEEee-ec-------CCCcccceEEEE--ECCeEEEEEe
Q 020019 254 GLELLSPTKLVVAGNPS--ARLVESSDGWETAAVVAK-FS-------GPVHRLATAATV--KDGRVYLNHM 312 (332)
Q Consensus 254 Gi~~~~dG~l~va~~~~--~~~v~~~dg~~~~~~~~~-~~-------~~~~~~pt~va~--~~g~lyv~~~ 312 (332)
.|... +|+||+..... +.++...+|..++.+.-. +. .+....|.++|+ .+++|||+.+
T Consensus 154 eLe~~-~G~lyanvw~s~~I~vIDp~tG~V~~~idl~~l~~~~~~~~~~~~~vlNGIA~d~~~~~lfVTGK 223 (243)
T 3mbr_X 154 ELEWV-NGELLANVWLTSRIARIDPASGKVVAWIDLQALVPDADALTDSTNDVLNGIAFDAEHDRLFVTGK 223 (243)
T ss_dssp EEEEE-TTEEEEEETTTTEEEEECTTTCBEEEEEECGGGSTTTTSCCCTTSSCEEEEEEETTTTEEEEEET
T ss_pred eeEEe-CCEEEEEECCCCeEEEEECCCCCEEEEEECCcCccccccccCCcCCceEEEEEcCCCCEEEEECC
Confidence 77776 79999887543 333455667322222211 10 123357789999 4789999754
|
| >2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1 | Back alignment and structure |
|---|
Probab=99.49 E-value=7.2e-12 Score=114.81 Aligned_cols=190 Identities=15% Similarity=0.133 Sum_probs=130.9
Q ss_pred cccceEEcCCCCEEEEEecCCeEEEEECCCCCCCccceeeeEEeccc-CcCCCccceEEEeCCCCeEEEEEeCcC-CCcc
Q 020019 46 FRECAKWDDSGRRFIVSFLDGGIGQVAVPDDYPPGTVLEEVTLVKDL-ELTGNGSLGLVLDHPRNRLLVVAADVF-GNKY 123 (332)
Q Consensus 46 ~pegia~d~~g~~~~~~~~~g~I~~vd~~~~~~~~~~~~~~~~~~~~-~~~~~~~~gi~vd~~~g~l~v~~~~~~-~~~~ 123 (332)
.+.+++++++|++|++. ...|+++++.+++. . .+...+ +.....++++++|++ |++|+++.+.. ....
T Consensus 91 ~v~~i~~~~dg~l~v~~--~~gl~~~d~~~g~~-----~--~~~~~~~~~~~~~~~~i~~d~~-G~l~v~~~~~~~~~~~ 160 (326)
T 2ghs_A 91 MGSALAKISDSKQLIAS--DDGLFLRDTATGVL-----T--LHAELESDLPGNRSNDGRMHPS-GALWIGTMGRKAETGA 160 (326)
T ss_dssp CEEEEEEEETTEEEEEE--TTEEEEEETTTCCE-----E--EEECSSTTCTTEEEEEEEECTT-SCEEEEEEETTCCTTC
T ss_pred cceEEEEeCCCeEEEEE--CCCEEEEECCCCcE-----E--EEeeCCCCCCCCCCCCEEECCC-CCEEEEeCCCcCCCCc
Confidence 57789999999988876 45699999877652 1 232211 111236889999996 99999875311 0123
Q ss_pred ceEEEEECCCCcEEEEEecCCCCCCCCCccceEECCCCc-EEEEeCCCCeEEEEcCC---C-ce---EEEecCCCCCCcc
Q 020019 124 SAVAAYDLSTWNRLFLTQLSGPSDGKSCADDVTVDAEGN-AYVTDVTGSKIWKVGVK---G-EF---LSIISSPLFTPKE 195 (332)
Q Consensus 124 ~~l~~~d~~~g~~~~~~~l~~~~~~~~~~ndiavd~dG~-lyvtd~~~~~I~~v~~~---g-~~---~~~~~~~~~~~p~ 195 (332)
+.|+++| +++...... ....++++++++||+ +|++++..+.|++++.+ | +. ..+.....
T Consensus 161 ~~l~~~~--~g~~~~~~~------~~~~~~~i~~s~dg~~lyv~~~~~~~I~~~d~~~~~Gl~~~~~~~~~~~~~----- 227 (326)
T 2ghs_A 161 GSIYHVA--KGKVTKLFA------DISIPNSICFSPDGTTGYFVDTKVNRLMRVPLDARTGLPTGKAEVFIDSTG----- 227 (326)
T ss_dssp EEEEEEE--TTEEEEEEE------EESSEEEEEECTTSCEEEEEETTTCEEEEEEBCTTTCCBSSCCEEEEECTT-----
T ss_pred eEEEEEe--CCcEEEeeC------CCcccCCeEEcCCCCEEEEEECCCCEEEEEEcccccCCcccCceEEEECCC-----
Confidence 5789998 466543321 124688999999985 99999999999999864 5 32 11211100
Q ss_pred cccCccccCeEEEccCceEEEEeCCCCeEEEEeCCCCCCccceeEEEEecCCCCCCCCeEEEe-CC-CeEEEEeCC
Q 020019 196 WYKNLVGLNGIVYHPDGFLIVIHTFSGNLFKIDIVDGVGEGEEIKLIRVAGGPLSFGDGLELL-SP-TKLVVAGNP 269 (332)
Q Consensus 196 ~~~~~~~~nGi~~~~dG~Lyva~~~~~~i~~id~~~~~~~~~~~~~v~~~g~~~~~pdGi~~~-~d-G~l~va~~~ 269 (332)
....|+|++++++|.||++....++|++++++ + +.+..+..+ ...|.+++++ ++ +.||++...
T Consensus 228 ---~~~~p~gi~~d~~G~lwva~~~~~~v~~~d~~-g----~~~~~i~~~---~~~~~~~af~g~d~~~L~vt~~~ 292 (326)
T 2ghs_A 228 ---IKGGMDGSVCDAEGHIWNARWGEGAVDRYDTD-G----NHIARYEVP---GKQTTCPAFIGPDASRLLVTSAR 292 (326)
T ss_dssp ---SSSEEEEEEECTTSCEEEEEETTTEEEEECTT-C----CEEEEEECS---CSBEEEEEEESTTSCEEEEEEBC
T ss_pred ---CCCCCCeeEECCCCCEEEEEeCCCEEEEECCC-C----CEEEEEECC---CCCcEEEEEecCCCCEEEEEecC
Confidence 12357899999999999999888899999985 4 245556544 2468899998 77 569999754
|
| >3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae} | Back alignment and structure |
|---|
Probab=99.48 E-value=1.1e-10 Score=104.66 Aligned_cols=191 Identities=13% Similarity=0.103 Sum_probs=138.3
Q ss_pred ccccceEEcCCCCEEEEEecCCeEEEEECCCCCCCccceeeeEEecccCcCCCccceEEEeCCCCeEEEEEeCcCCCccc
Q 020019 45 FFRECAKWDDSGRRFIVSFLDGGIGQVAVPDDYPPGTVLEEVTLVKDLELTGNGSLGLVLDHPRNRLLVVAADVFGNKYS 124 (332)
Q Consensus 45 ~~pegia~d~~g~~~~~~~~~g~I~~vd~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~vd~~~g~l~v~~~~~~~~~~~ 124 (332)
..+++++++++|++|+ + ..+.|+.+++ +++. .- ++. .+. .....+..+.++ |++++++.+. ..
T Consensus 37 ~~~~~~~~~pdG~ilv-s-~~~~V~~~d~-~G~~----~W--~~~-~~~--~~~~~~~~~~~d-G~~lv~~~~~----~~ 99 (276)
T 3no2_A 37 WECNSVAATKAGEILF-S-YSKGAKMITR-DGRE----LW--NIA-APA--GCEMQTARILPD-GNALVAWCGH----PS 99 (276)
T ss_dssp CCCCEEEECTTSCEEE-E-CBSEEEEECT-TSCE----EE--EEE-CCT--TCEEEEEEECTT-SCEEEEEEST----TE
T ss_pred CCCcCeEECCCCCEEE-e-CCCCEEEECC-CCCE----EE--EEc-CCC--CccccccEECCC-CCEEEEecCC----CC
Confidence 3688999999999888 3 3678999999 5652 11 221 111 124567778886 8888887531 35
Q ss_pred eEEEEECCCCcEEEEEecCCCCC-CCCCccceEECCCCcEEEEeCCCCeEEEEcCCCceEEEecCCCCCCcccccCcccc
Q 020019 125 AVAAYDLSTWNRLFLTQLSGPSD-GKSCADDVTVDAEGNAYVTDVTGSKIWKVGVKGEFLSIISSPLFTPKEWYKNLVGL 203 (332)
Q Consensus 125 ~l~~~d~~~g~~~~~~~l~~~~~-~~~~~ndiavd~dG~lyvtd~~~~~I~~v~~~g~~~~~~~~~~~~~p~~~~~~~~~ 203 (332)
+++.+|+ +|+.++.+.+..... ....+.+++++++|+++++++..+.|+.+|++|+....+..+ ..+
T Consensus 100 ~v~~vd~-~Gk~l~~~~~~~~~~~~~~~~~~v~~~~~G~~lv~~~~~~~v~~~d~~G~~~w~~~~~-----------~~~ 167 (276)
T 3no2_A 100 TILEVNM-KGEVLSKTEFETGIERPHAQFRQINKNKKGNYLVPLFATSEVREIAPNGQLLNSVKLS-----------GTP 167 (276)
T ss_dssp EEEEECT-TSCEEEEEEECCSCSSGGGSCSCCEECTTSCEEEEETTTTEEEEECTTSCEEEEEECS-----------SCC
T ss_pred EEEEEeC-CCCEEEEEeccCCCCcccccccCceECCCCCEEEEecCCCEEEEECCCCCEEEEEECC-----------CCc
Confidence 7888987 678777776632111 113577899999999999999999999999999866444321 235
Q ss_pred CeEEEccCceEEEEeCCCCeEEEEeCCCCCCccceeEEEEec---CCCCCCCCeEEEeCCCeEEEEeC
Q 020019 204 NGIVYHPDGFLIVIHTFSGNLFKIDIVDGVGEGEEIKLIRVA---GGPLSFGDGLELLSPTKLVVAGN 268 (332)
Q Consensus 204 nGi~~~~dG~Lyva~~~~~~i~~id~~~~~~~~~~~~~v~~~---g~~~~~pdGi~~~~dG~l~va~~ 268 (332)
.++.+.++|.++++...+++|+.+++++++ .+-.+... +..+..|.++++.++|++|+++.
T Consensus 168 ~~~~~~~~g~~~v~~~~~~~v~~~d~~tG~----~~w~~~~~~~~~~~l~~~~~~~~~~~G~i~v~~~ 231 (276)
T 3no2_A 168 FSSAFLDNGDCLVACGDAHCFVQLNLESNR----IVRRVNANDIEGVQLFFVAQLFPLQNGGLYICNW 231 (276)
T ss_dssp CEEEECTTSCEEEECBTTSEEEEECTTTCC----EEEEEEGGGSBSCCCSEEEEEEECTTSCEEEEEE
T ss_pred cceeEcCCCCEEEEeCCCCeEEEEeCcCCc----EEEEecCCCCCCccccccccceEcCCCCEEEEec
Confidence 688999999999999989999999999873 45445422 22356689999999999999983
|
| >2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii} | Back alignment and structure |
|---|
Probab=99.48 E-value=2.9e-11 Score=114.45 Aligned_cols=241 Identities=12% Similarity=0.063 Sum_probs=151.7
Q ss_pred CCCCEEEEE-ecCCeEEEEECCCCCCCccceeeeEEecccCc---CC-CccceEEEeCCCCeEEEEEeCcC-CCccceEE
Q 020019 54 DSGRRFIVS-FLDGGIGQVAVPDDYPPGTVLEEVTLVKDLEL---TG-NGSLGLVLDHPRNRLLVVAADVF-GNKYSAVA 127 (332)
Q Consensus 54 ~~g~~~~~~-~~~g~I~~vd~~~~~~~~~~~~~~~~~~~~~~---~~-~~~~gi~vd~~~g~l~v~~~~~~-~~~~~~l~ 127 (332)
.+++.+++. +.+++|+.+|..+.... .+....++..+. .+ ..|.++...++ | +||+..+.. +...+.+.
T Consensus 93 ~~r~~l~v~~l~s~~I~viD~~t~p~~---p~~~k~ie~~~~~~~~g~s~Ph~~~~~pd-G-i~Vs~~g~~~g~~~g~v~ 167 (462)
T 2ece_A 93 IERRFLIVPGLRSSRIYIIDTKPNPRE---PKIIKVIEPEEVKKVSGYSRLHTVHCGPD-A-IYISALGNEEGEGPGGIL 167 (462)
T ss_dssp CCSCEEEEEBTTTCCEEEEECCSCTTS---CEEEEEECHHHHHHHHCEEEEEEEEECSS-C-EEEEEEEETTSCSCCEEE
T ss_pred ccCCEEEEccCCCCeEEEEECCCCCCC---ceeeeeechhhcccccCCCcccceeECCC-e-EEEEcCCCcCCCCCCeEE
Confidence 777766655 88899999997533110 011123310011 12 26899999996 7 899876531 12346799
Q ss_pred EEECCCCcEEEEEecCCCCCCCCCccceEECCCCc-EEEEeCC------------------CCeEEEEcCC-CceEEEec
Q 020019 128 AYDLSTWNRLFLTQLSGPSDGKSCADDVTVDAEGN-AYVTDVT------------------GSKIWKVGVK-GEFLSIIS 187 (332)
Q Consensus 128 ~~d~~~g~~~~~~~l~~~~~~~~~~ndiavd~dG~-lyvtd~~------------------~~~I~~v~~~-g~~~~~~~ 187 (332)
.+|.+++++...+... .....++.|+.+.|+++ +|+++++ ..+|..+|.+ ++....+.
T Consensus 168 vlD~~T~~v~~~~~~~--~~~~~~~Yd~~~~p~~~~mvsS~wg~p~~~~~g~~~~~~~~~~~d~V~v~D~~~~k~~~tI~ 245 (462)
T 2ece_A 168 MLDHYSFEPLGKWEID--RGDQYLAYDFWWNLPNEVLVSSEWAVPNTIEDGLKLEHLKDRYGNRIHFWDLRKRKRIHSLT 245 (462)
T ss_dssp EECTTTCCEEEECCSB--CTTCCCCCCEEEETTTTEEEECBCCCHHHHTTCCCTTTHHHHSCCEEEEEETTTTEEEEEEE
T ss_pred EEECCCCeEEEEEccC--CCCccccceEEECCCCCEEEEccCcCccccccccchhhhhhccCCEEEEEECCCCcEeeEEe
Confidence 9999999988777653 12246788999999987 5666653 6889999976 44333332
Q ss_pred CCCCCCcccccCccccCeEEE--ccCc-eEEEEeC-----CCCeEEEEeCCCCCCccceeEEEEecCC----C-------
Q 020019 188 SPLFTPKEWYKNLVGLNGIVY--HPDG-FLIVIHT-----FSGNLFKIDIVDGVGEGEEIKLIRVAGG----P------- 248 (332)
Q Consensus 188 ~~~~~~p~~~~~~~~~nGi~~--~~dG-~Lyva~~-----~~~~i~~id~~~~~~~~~~~~~v~~~g~----~------- 248 (332)
.+. ...+|.+|.+ +|+| ++||+.. .+++|+.+..+.+.. +..+.+.++.. .
T Consensus 246 vg~--------~g~~P~~i~f~~~Pdg~~aYV~~e~~~~~Lss~V~v~~~d~g~~--~~~~vIdi~~~~v~~~lp~~~~~ 315 (462)
T 2ece_A 246 LGE--------ENRMALELRPLHDPTKLMGFINMVVSLKDLSSSIWLWFYEDGKW--NAEKVIEIPAEPLEGNLPEILKP 315 (462)
T ss_dssp SCT--------TEEEEEEEEECSSTTCCEEEEEEEEETTTCCEEEEEEEEETTEE--EEEEEEEECCEECCSSCCGGGGG
T ss_pred cCC--------CCCccceeEeeECCCCCEEEEEEeeeccCCCceEEEEEecCCce--eEEEEEeCCCccccccccccccc
Confidence 210 1235678877 9999 9999999 999998777665422 12233322210 0
Q ss_pred ----CCCCCeEEEeCCCe-EEEEeCC--ceEEEEcCCCceEEEEEeeecCCCc-------------ccceEEEE--ECCe
Q 020019 249 ----LSFGDGLELLSPTK-LVVAGNP--SARLVESSDGWETAAVVAKFSGPVH-------------RLATAATV--KDGR 306 (332)
Q Consensus 249 ----~~~pdGi~~~~dG~-l~va~~~--~~~~v~~~dg~~~~~~~~~~~~~~~-------------~~pt~va~--~~g~ 306 (332)
.+.|.+|.+++||+ |||++.. ...++...+. ...++...+...+. .+|..+++ ++++
T Consensus 316 f~~~~~~pa~I~lS~DGrfLYVSnrg~d~VavfdV~d~-~~~~lv~~I~tGG~~~~~~~~~G~~~~ggPr~~~lSpDGk~ 394 (462)
T 2ece_A 316 FKAVPPLVTDIDISLDDKFLYLSLWGIGEVRQYDISNP-FKPVLTGKVKLGGIFHRADHPAGHKLTGAPQMLEISRDGRR 394 (462)
T ss_dssp GTEECCCCCCEEECTTSCEEEEEETTTTEEEEEECSST-TSCEEEEEEECBTTTTCBCCTTSCCCCSCCCCEEECTTSSE
T ss_pred cccCCCceeEEEECCCCCEEEEEeCCCCEEEEEEecCC-CCcEEEEEEEeCCeeccccccccccCCCCCCEEEEcCCCCE
Confidence 14689999999976 9999853 3344444333 22345554443211 25889999 5779
Q ss_pred EEEEEe
Q 020019 307 VYLNHM 312 (332)
Q Consensus 307 lyv~~~ 312 (332)
|||+|.
T Consensus 395 LyVaNs 400 (462)
T 2ece_A 395 VYVTNS 400 (462)
T ss_dssp EEEECC
T ss_pred EEEEcC
Confidence 999883
|
| >2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ... | Back alignment and structure |
|---|
Probab=99.47 E-value=1.6e-11 Score=114.17 Aligned_cols=241 Identities=10% Similarity=0.029 Sum_probs=131.2
Q ss_pred CCccccceEEcCCCCEEEEE-e---------cCCeEEEEECCCCCCCccceeeeEEecccCcCCCccceEEEeCCCCeEE
Q 020019 43 SSFFRECAKWDDSGRRFIVS-F---------LDGGIGQVAVPDDYPPGTVLEEVTLVKDLELTGNGSLGLVLDHPRNRLL 112 (332)
Q Consensus 43 ~~~~pegia~d~~g~~~~~~-~---------~~g~I~~vd~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~vd~~~g~l~ 112 (332)
.+..| +++++++|+.+|+. . .++.|..+|..+.+ +..+..........+..|.+|+++++..+||
T Consensus 49 ~g~~p-~i~~spdg~~lyv~~~~~~~~~~g~~~~~v~v~d~~t~~----~~~~i~~~~~~~~~g~~p~~i~~spdg~~l~ 123 (361)
T 2oiz_A 49 TAFNG-HVQVSNDGKKIYTMTTYHERITRGKRSDVVEVWDADKLT----FEKEISLPPKRVQGLNYDGLFRQTTDGKFIV 123 (361)
T ss_dssp CCEEE-EEEECTTSSEEEEEEEEETTSSSSCEEEEEEEEETTTCC----EEEEEEECTTBCCBCCCGGGEEECTTSSEEE
T ss_pred CCCCC-ceEECCCCCEEEEEEecccccccCCCCCEEEEEECcCCc----EEEEEEcCccccccCCCcceEEECCCCCEEE
Confidence 35678 99999999876665 2 23569999987665 2221111110001234789999999855788
Q ss_pred EEEeCcCCCccceEEEEECCCCcEEEE-EecCCCCCCCCCccc----eEECCCCcE-EEEeCCCCeEE------------
Q 020019 113 VVAADVFGNKYSAVAAYDLSTWNRLFL-TQLSGPSDGKSCADD----VTVDAEGNA-YVTDVTGSKIW------------ 174 (332)
Q Consensus 113 v~~~~~~~~~~~~l~~~d~~~g~~~~~-~~l~~~~~~~~~~nd----iavd~dG~l-yvtd~~~~~I~------------ 174 (332)
+++.. ..+.|.+||.++++.... +...+...-..+|.+ +++.++|.+ |+.....+.+.
T Consensus 124 v~n~~----~~~~v~v~d~~~~~~~~~~i~~~~~~~v~~~p~~~~~~~~~~~dg~~~~v~~~~~g~~~~~~~~~~~~~~~ 199 (361)
T 2oiz_A 124 LQNAS----PATSIGIVDVAKGDYVEDVTAAAGCWSVIPQPNRPRSFMTICGDGGLLTINLGEDGKVASQSRSKQMFSVK 199 (361)
T ss_dssp EEEES----SSEEEEEEETTTTEEEEEEGGGTTEEEEEECTTSSSEEEEEETTSSEEEEEECTTSSEEEEEECCCCSCTT
T ss_pred EECCC----CCCeEEEEECCCCcEEEEEecCCCcceeEEcCCCCeeEEEECCCCcEEEEEECCCCcEeeeccccceEcCC
Confidence 88753 135789999999887654 333110000012222 555555543 33322212221
Q ss_pred ----------------EEcCCCceEEEecCCCCC----Cc------ccccCc---cccCeEEEccCc-eEEEEeC-----
Q 020019 175 ----------------KVGVKGEFLSIISSPLFT----PK------EWYKNL---VGLNGIVYHPDG-FLIVIHT----- 219 (332)
Q Consensus 175 ----------------~v~~~g~~~~~~~~~~~~----~p------~~~~~~---~~~nGi~~~~dG-~Lyva~~----- 219 (332)
.++.+++... ++...-. .+ ...... .++..+++++|| ++|++..
T Consensus 200 ~~~~~~~~~~~g~~~~~~~~~~~v~v-~d~~~~~~~~~~~~~~~~~~~~~~~~~p~g~~~~a~~~dg~~lyv~~~~~~~~ 278 (361)
T 2oiz_A 200 DDPIFIAPALDKDKAHFVSYYGNVYS-ADFSGDEVKVDGPWSLLNDEDKAKNWVPGGYNLVGLHRASGRMYVFMHPDGKE 278 (361)
T ss_dssp TSCBCSCCEECSSEEEEEBTTSEEEE-EECSSSSCEEEEEEESCCHHHHHTTCEECCSSCEEEETTTTEEEEEEESSCCT
T ss_pred CCceEEEecccCCEEEEEeCCCeEEE-EEecCCCceecccccccCccccccccccCCeeEEEEecCCCeEEEEEccCCCc
Confidence 1111111111 0000000 00 000001 223349999998 9999875
Q ss_pred -----CCCeEEEEeCCCCCCccceeEEEEecCCCCCCCCeEEEeCCCe-EEEEeCCceEEEEcCCCceEEEEEeeecCCC
Q 020019 220 -----FSGNLFKIDIVDGVGEGEEIKLIRVAGGPLSFGDGLELLSPTK-LVVAGNPSARLVESSDGWETAAVVAKFSGPV 293 (332)
Q Consensus 220 -----~~~~i~~id~~~~~~~~~~~~~v~~~g~~~~~pdGi~~~~dG~-l~va~~~~~~~v~~~dg~~~~~~~~~~~~~~ 293 (332)
.+++|+.||+.++ +.+..+... . |.+|++++||+ ||+++.+...++...++ +. +++..+. +.
T Consensus 279 ~~~~~~~~~v~viD~~t~----~~v~~i~~~----~-p~~ia~spdg~~l~v~n~~~v~v~D~~t~-~l-~~~~~i~-~~ 346 (361)
T 2oiz_A 279 GTHKFPAAEIWVMDTKTK----QRVARIPGR----D-ALSMTIDQQRNLMLTLDGGNVNVYDISQP-EP-KLLRTIE-GA 346 (361)
T ss_dssp TCTTCCCSEEEEEETTTT----EEEEEEECT----T-CCEEEEETTTTEEEEECSSCEEEEECSSS-SC-EEEEEET-TS
T ss_pred ccccCCCceEEEEECCCC----cEEEEEecC----C-eeEEEECCCCCEEEEeCCCeEEEEECCCC-cc-eeeEEec-cC
Confidence 2458999999987 356666654 2 99999999976 66666533343344433 11 4445442 12
Q ss_pred cccceEEEE-ECC
Q 020019 294 HRLATAATV-KDG 305 (332)
Q Consensus 294 ~~~pt~va~-~~g 305 (332)
...|..+++ .+|
T Consensus 347 G~~P~~~~~~p~G 359 (361)
T 2oiz_A 347 AEASLQVQFHPVG 359 (361)
T ss_dssp CSSEEEEEECCCS
T ss_pred CCCcEEEEecCCC
Confidence 457888888 454
|
| >3qqz_A Putative uncharacterized protein YJIK; MCSG, PSI-2, structural genomics, midwest center for structu genomics, TOLB-like, Ca binding; 2.55A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.47 E-value=6.3e-11 Score=104.85 Aligned_cols=196 Identities=15% Similarity=0.174 Sum_probs=131.5
Q ss_pred ccceEEEeCCCCeEEEEEeCcCCCccceEEEEECCCCcEEEEEecCCCCCCCCCccceEECCCCcEEEEeCCCCeEEEEc
Q 020019 98 GSLGLVLDHPRNRLLVVAADVFGNKYSAVAAYDLSTWNRLFLTQLSGPSDGKSCADDVTVDAEGNAYVTDVTGSKIWKVG 177 (332)
Q Consensus 98 ~~~gi~vd~~~g~l~v~~~~~~~~~~~~l~~~d~~~g~~~~~~~l~~~~~~~~~~ndiavd~dG~lyvtd~~~~~I~~v~ 177 (332)
.+.||++++++++||++... .+.|+.+|++ |++...+.+. +..-+-||+++++|.+|+++...++++.++
T Consensus 28 ~lSGla~~~~~~~L~aV~d~-----~~~I~~ld~~-g~v~~~i~l~----g~~D~EGIa~~~~g~~~vs~E~~~~l~~~~ 97 (255)
T 3qqz_A 28 NISSLTWSAQSNTLFSTINK-----PAAIVEMTTN-GDLIRTIPLD----FVKDLETIEYIGDNQFVISDERDYAIYVIS 97 (255)
T ss_dssp CEEEEEEETTTTEEEEEEET-----TEEEEEEETT-CCEEEEEECS----SCSSEEEEEECSTTEEEEEETTTTEEEEEE
T ss_pred CcceeEEeCCCCEEEEEECC-----CCeEEEEeCC-CCEEEEEecC----CCCChHHeEEeCCCEEEEEECCCCcEEEEE
Confidence 58899999987899998763 5679999998 8888877773 235688999999998999998889888775
Q ss_pred --CCCceE--EEecCCCCCCcccccCccccCeEEEccCc-eEEEEeCCCC-eEEEEeCCCCCCccceeEEEEe----cCC
Q 020019 178 --VKGEFL--SIISSPLFTPKEWYKNLVGLNGIVYHPDG-FLIVIHTFSG-NLFKIDIVDGVGEGEEIKLIRV----AGG 247 (332)
Q Consensus 178 --~~g~~~--~~~~~~~~~~p~~~~~~~~~nGi~~~~dG-~Lyva~~~~~-~i~~id~~~~~~~~~~~~~v~~----~g~ 247 (332)
.+++.. .....+.... +...+.-||++++++ +||++..... +||+++--.. +...+...- ...
T Consensus 98 v~~~~~i~~~~~~~~~~~~~----~~N~g~EGLA~d~~~~~L~va~E~~p~~i~~~~g~~~---~~~l~i~~~~~~~~~~ 170 (255)
T 3qqz_A 98 LTPNSEVKILKKIKIPLQES----PTNCGFEGLAYSRQDHTFWFFKEKNPIEVYKVNGLLS---SNELHISKDKALQRQF 170 (255)
T ss_dssp ECTTCCEEEEEEEECCCSSC----CCSSCCEEEEEETTTTEEEEEEESSSEEEEEEESTTC---SSCCEEEECHHHHHTC
T ss_pred cCCCCeeeeeeeeccccccc----cccCCcceEEEeCCCCEEEEEECcCCceEEEEccccc---CCceeeecchhhcccc
Confidence 445422 1121111111 123467899999998 9999988766 8999982101 112222221 112
Q ss_pred CCCCCCeEEEeCC-CeEEEEeCCceEEE-EcCCCceEEEEEeeecC-----CCcccceEEEE-ECCeEEEEE
Q 020019 248 PLSFGDGLELLSP-TKLVVAGNPSARLV-ESSDGWETAAVVAKFSG-----PVHRLATAATV-KDGRVYLNH 311 (332)
Q Consensus 248 ~~~~pdGi~~~~d-G~l~va~~~~~~~v-~~~dg~~~~~~~~~~~~-----~~~~~pt~va~-~~g~lyv~~ 311 (332)
.+..+.++++|+. |+||+....+..++ ...+| +......-..+ ..+.+|.++|+ .+|+|||++
T Consensus 171 ~~~d~S~l~~dp~tg~lliLS~~s~~L~~~d~~g-~~~~~~~L~~g~~~l~~~~~qpEGia~d~~G~lyIvs 241 (255)
T 3qqz_A 171 TLDDVSGAEFNQQKNTLLVLSHESRALQEVTLVG-EVIGEMSLTKGSRGLSHNIKQAEGVAMDASGNIYIVS 241 (255)
T ss_dssp CSSCCCEEEEETTTTEEEEEETTTTEEEEECTTC-CEEEEEECSTTGGGCSSCCCSEEEEEECTTCCEEEEE
T ss_pred ccCCceeEEEcCCCCeEEEEECCCCeEEEEcCCC-CEEEEEEcCCccCCcccccCCCCeeEECCCCCEEEEc
Confidence 3456899999987 89999986654444 44556 32222221111 13578999999 789999964
|
| >3qqz_A Putative uncharacterized protein YJIK; MCSG, PSI-2, structural genomics, midwest center for structu genomics, TOLB-like, Ca binding; 2.55A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.47 E-value=2.3e-11 Score=107.59 Aligned_cols=208 Identities=11% Similarity=0.121 Sum_probs=137.2
Q ss_pred cccceEEcCCCC-EEEEEecCCeEEEEECCCCCCCccceeeeEEecccCcCCCccceEEEeCCCCeEEEEEeCcCCCccc
Q 020019 46 FRECAKWDDSGR-RFIVSFLDGGIGQVAVPDDYPPGTVLEEVTLVKDLELTGNGSLGLVLDHPRNRLLVVAADVFGNKYS 124 (332)
Q Consensus 46 ~pegia~d~~g~-~~~~~~~~g~I~~vd~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~vd~~~g~l~v~~~~~~~~~~~ 124 (332)
.+.|++++++++ +|.+.-..++|+++|++ ++ +.. .+. -.+. .-+.||+++++ |++||++.. ..
T Consensus 28 ~lSGla~~~~~~~L~aV~d~~~~I~~ld~~-g~----v~~--~i~-l~g~--~D~EGIa~~~~-g~~~vs~E~-----~~ 91 (255)
T 3qqz_A 28 NISSLTWSAQSNTLFSTINKPAAIVEMTTN-GD----LIR--TIP-LDFV--KDLETIEYIGD-NQFVISDER-----DY 91 (255)
T ss_dssp CEEEEEEETTTTEEEEEEETTEEEEEEETT-CC----EEE--EEE-CSSC--SSEEEEEECST-TEEEEEETT-----TT
T ss_pred CcceeEEeCCCCEEEEEECCCCeEEEEeCC-CC----EEE--EEe-cCCC--CChHHeEEeCC-CEEEEEECC-----CC
Confidence 688999999866 44445557899999997 54 222 221 1121 25789999986 888888753 45
Q ss_pred eEEEEECCCCc---EEEEEecCC-CCCCCCCccceEECCCC-cEEEEeCCCC-eEEEEc--CCCceEEEecCCCCCCccc
Q 020019 125 AVAAYDLSTWN---RLFLTQLSG-PSDGKSCADDVTVDAEG-NAYVTDVTGS-KIWKVG--VKGEFLSIISSPLFTPKEW 196 (332)
Q Consensus 125 ~l~~~d~~~g~---~~~~~~l~~-~~~~~~~~ndiavd~dG-~lyvtd~~~~-~I~~v~--~~g~~~~~~~~~~~~~p~~ 196 (332)
.+++|+..... ......++- ....+...-++++|+++ ++|++..... .||.++ +.++.......+.+..+
T Consensus 92 ~l~~~~v~~~~~i~~~~~~~~~~~~~~~N~g~EGLA~d~~~~~L~va~E~~p~~i~~~~g~~~~~~l~i~~~~~~~~~-- 169 (255)
T 3qqz_A 92 AIYVISLTPNSEVKILKKIKIPLQESPTNCGFEGLAYSRQDHTFWFFKEKNPIEVYKVNGLLSSNELHISKDKALQRQ-- 169 (255)
T ss_dssp EEEEEEECTTCCEEEEEEEECCCSSCCCSSCCEEEEEETTTTEEEEEEESSSEEEEEEESTTCSSCCEEEECHHHHHT--
T ss_pred cEEEEEcCCCCeeeeeeeeccccccccccCCcceEEEeCCCCEEEEEECcCCceEEEEcccccCCceeeecchhhccc--
Confidence 78888765433 223333321 11234567899999986 6999877666 899998 22221222221111000
Q ss_pred ccCccccCeEEEccCc-eEEEEeCCCCeEEEEeCCCCCCccceeEEEEecC------CCCCCCCeEEEeCCCeEEEEeCC
Q 020019 197 YKNLVGLNGIVYHPDG-FLIVIHTFSGNLFKIDIVDGVGEGEEIKLIRVAG------GPLSFGDGLELLSPTKLVVAGNP 269 (332)
Q Consensus 197 ~~~~~~~nGi~~~~dG-~Lyva~~~~~~i~~id~~~~~~~~~~~~~v~~~g------~~~~~pdGi~~~~dG~l~va~~~ 269 (332)
.....+-+|+++|.- +||+....+++|..+|.+.. .+..+.+.. ..+..|.||++|++|+|||++..
T Consensus 170 -~~~~d~S~l~~dp~tg~lliLS~~s~~L~~~d~~g~-----~~~~~~L~~g~~~l~~~~~qpEGia~d~~G~lyIvsE~ 243 (255)
T 3qqz_A 170 -FTLDDVSGAEFNQQKNTLLVLSHESRALQEVTLVGE-----VIGEMSLTKGSRGLSHNIKQAEGVAMDASGNIYIVSEP 243 (255)
T ss_dssp -CCSSCCCEEEEETTTTEEEEEETTTTEEEEECTTCC-----EEEEEECSTTGGGCSSCCCSEEEEEECTTCCEEEEETT
T ss_pred -cccCCceeEEEcCCCCeEEEEECCCCeEEEEcCCCC-----EEEEEEcCCccCCcccccCCCCeeEECCCCCEEEEcCC
Confidence 012457899999986 99999999999999998854 566666652 12468999999999999999865
Q ss_pred ceEEEEcC
Q 020019 270 SARLVESS 277 (332)
Q Consensus 270 ~~~~v~~~ 277 (332)
+..+++.+
T Consensus 244 n~~y~f~~ 251 (255)
T 3qqz_A 244 NRFYRFTP 251 (255)
T ss_dssp TEEEEEEC
T ss_pred ceEEEEEe
Confidence 54445544
|
| >1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1 | Back alignment and structure |
|---|
Probab=99.46 E-value=2.2e-10 Score=103.52 Aligned_cols=242 Identities=10% Similarity=0.091 Sum_probs=143.0
Q ss_pred CCccccceEEcCCCCEEEEE-ecCCeEEEEECC--CCCCCccceeeeEEecccCcCCCccceEEEeCCCCeEEEEEeCcC
Q 020019 43 SSFFRECAKWDDSGRRFIVS-FLDGGIGQVAVP--DDYPPGTVLEEVTLVKDLELTGNGSLGLVLDHPRNRLLVVAADVF 119 (332)
Q Consensus 43 ~~~~pegia~d~~g~~~~~~-~~~g~I~~vd~~--~~~~~~~~~~~~~~~~~~~~~~~~~~gi~vd~~~g~l~v~~~~~~ 119 (332)
....|.+++++++|+.+++. ..++.|..++.+ +++. + .+...+. +..+.+++++++...||++...
T Consensus 36 ~~~~~~~~~~spdg~~l~~~~~~~~~v~~~~~~~~~~~~-----~--~~~~~~~--~~~~~~~~~s~dg~~l~~~~~~-- 104 (343)
T 1ri6_A 36 VPGQVQPMVVSPDKRYLYVGVRPEFRVLAYRIAPDDGAL-----T--FAAESAL--PGSLTHISTDHQGQFVFVGSYN-- 104 (343)
T ss_dssp CSSCCCCEEECTTSSEEEEEETTTTEEEEEEECTTTCCE-----E--EEEEEEC--SSCCSEEEECTTSSEEEEEETT--
T ss_pred cCCCCceEEECCCCCEEEEeecCCCeEEEEEecCCCCce-----e--ecccccc--CCCCcEEEEcCCCCEEEEEecC--
Confidence 34478899999999966555 444888776655 4442 1 1111111 1268899999974457777642
Q ss_pred CCccceEEEEECCCCcEEEEE-ecCCCCCCCCCccceEECCCCc-EEEEeCCCCeEEEEcCC--CceEEEecCCCCCCcc
Q 020019 120 GNKYSAVAAYDLSTWNRLFLT-QLSGPSDGKSCADDVTVDAEGN-AYVTDVTGSKIWKVGVK--GEFLSIISSPLFTPKE 195 (332)
Q Consensus 120 ~~~~~~l~~~d~~~g~~~~~~-~l~~~~~~~~~~ndiavd~dG~-lyvtd~~~~~I~~v~~~--g~~~~~~~~~~~~~p~ 195 (332)
.+.+.+||.+.++..... .+. ....+++++++|+|+ +|+++...+.|+.++.+ ++....... ....
T Consensus 105 ---~~~i~~~d~~~~~~~~~~~~~~----~~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~-~~~~-- 174 (343)
T 1ri6_A 105 ---AGNVSVTRLEDGLPVGVVDVVE----GLDGCHSANISPDNRTLWVPALKQDRICLFTVSDDGHLVAQDPA-EVTT-- 174 (343)
T ss_dssp ---TTEEEEEEEETTEEEEEEEEEC----CCTTBCCCEECTTSSEEEEEEGGGTEEEEEEECTTSCEEEEEEE-EEEC--
T ss_pred ---CCeEEEEECCCCcccccccccc----CCCCceEEEECCCCCEEEEecCCCCEEEEEEecCCCceeeeccc-cccc--
Confidence 356888988433322222 221 134688999999986 89998778888887754 554322100 0000
Q ss_pred cccCccccCeEEEccCc-eEEEEeCCCCeEEEEeCCC--CCCccceeEEEE-ecC--CCCCCCCeEEEeCCCe-EEEEeC
Q 020019 196 WYKNLVGLNGIVYHPDG-FLIVIHTFSGNLFKIDIVD--GVGEGEEIKLIR-VAG--GPLSFGDGLELLSPTK-LVVAGN 268 (332)
Q Consensus 196 ~~~~~~~~nGi~~~~dG-~Lyva~~~~~~i~~id~~~--~~~~~~~~~~v~-~~g--~~~~~pdGi~~~~dG~-l~va~~ 268 (332)
.....+.+++++||| .||++....++|..++++. ++. .....+. .+. .....|.+++++++|+ ||+++.
T Consensus 175 --~~~~~~~~~~~~pdg~~l~~~~~~~~~i~~~~~~~~~g~~--~~~~~~~~~~~~~~~~~~~~~i~~s~dg~~l~v~~~ 250 (343)
T 1ri6_A 175 --VEGAGPRHMVFHPNEQYAYCVNELNSSVDVWELKDPHGNI--ECVQTLDMMPENFSDTRWAADIHITPDGRHLYACDR 250 (343)
T ss_dssp --STTCCEEEEEECTTSSEEEEEETTTTEEEEEESSCTTSCC--EEEEEEECSCTTCCSCCCEEEEEECTTSSEEEEEET
T ss_pred --CCCCCcceEEECCCCCEEEEEeCCCCEEEEEEecCCCCcE--EEEeeccccCccccccCCccceEECCCCCEEEEEec
Confidence 012357799999999 7999998899999998853 321 1122232 110 0123456899999985 777763
Q ss_pred C--ceEEEEcCC-CceEEEEEeeecCCCcccceEEEE-E-CCeEEEEEe
Q 020019 269 P--SARLVESSD-GWETAAVVAKFSGPVHRLATAATV-K-DGRVYLNHM 312 (332)
Q Consensus 269 ~--~~~~v~~~d-g~~~~~~~~~~~~~~~~~pt~va~-~-~g~lyv~~~ 312 (332)
. ...+..... + ...+....+... ..|.++++ . +..||+++.
T Consensus 251 ~~~~i~v~d~~~~~-~~~~~~~~~~~~--~~~~~~~~s~dg~~l~~~~~ 296 (343)
T 1ri6_A 251 TASLITVFSVSEDG-SVLSKEGFQPTE--TQPRGFNVDHSGKYLIAAGQ 296 (343)
T ss_dssp TTTEEEEEEECTTS-CCEEEEEEEECS--SSCCCEEECTTSSEEEEECT
T ss_pred CCCEEEEEEEcCCC-CceEEeeeecCC--CccceEEECCCCCEEEEecC
Confidence 2 233333331 2 122344444322 23788888 4 456887654
|
| >1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1 | Back alignment and structure |
|---|
Probab=99.45 E-value=6.3e-11 Score=107.20 Aligned_cols=230 Identities=14% Similarity=0.152 Sum_probs=141.7
Q ss_pred cccceEEcCCCCEEEEE-ecCCeEEEEECCCCCCCccceeeeEEecccCcCCCccceEEEeCCCCeEEEEEeCcCCCccc
Q 020019 46 FRECAKWDDSGRRFIVS-FLDGGIGQVAVPDDYPPGTVLEEVTLVKDLELTGNGSLGLVLDHPRNRLLVVAADVFGNKYS 124 (332)
Q Consensus 46 ~pegia~d~~g~~~~~~-~~~g~I~~vd~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~vd~~~g~l~v~~~~~~~~~~~ 124 (332)
.|.+++++++|+.+++. ..++.|..++..++.. .+..... +. +..+.+++++++...+|+++.. .+
T Consensus 85 ~~~~~~~s~dg~~l~~~~~~~~~i~~~d~~~~~~----~~~~~~~--~~--~~~~~~~~~s~dg~~l~~~~~~-----~~ 151 (343)
T 1ri6_A 85 SLTHISTDHQGQFVFVGSYNAGNVSVTRLEDGLP----VGVVDVV--EG--LDGCHSANISPDNRTLWVPALK-----QD 151 (343)
T ss_dssp CCSEEEECTTSSEEEEEETTTTEEEEEEEETTEE----EEEEEEE--CC--CTTBCCCEECTTSSEEEEEEGG-----GT
T ss_pred CCcEEEEcCCCCEEEEEecCCCeEEEEECCCCcc----ccccccc--cC--CCCceEEEECCCCCEEEEecCC-----CC
Confidence 78999999999966555 5578888888742321 0111111 11 1257899999974468888732 35
Q ss_pred eEEEEECCC-CcEEEEE--ecCCCCCCCCCccceEECCCCc-EEEEeCCCCeEEEEcCC---CceEEEecCCCCCCcccc
Q 020019 125 AVAAYDLST-WNRLFLT--QLSGPSDGKSCADDVTVDAEGN-AYVTDVTGSKIWKVGVK---GEFLSIISSPLFTPKEWY 197 (332)
Q Consensus 125 ~l~~~d~~~-g~~~~~~--~l~~~~~~~~~~ndiavd~dG~-lyvtd~~~~~I~~v~~~---g~~~~~~~~~~~~~p~~~ 197 (332)
.+.+||.++ ++..... .+..+ ....|.+++++|+|+ +|+++...+.|..++.+ |+........... ...
T Consensus 152 ~v~~~d~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~pdg~~l~~~~~~~~~i~~~~~~~~~g~~~~~~~~~~~~--~~~ 227 (343)
T 1ri6_A 152 RICLFTVSDDGHLVAQDPAEVTTV--EGAGPRHMVFHPNEQYAYCVNELNSSVDVWELKDPHGNIECVQTLDMMP--ENF 227 (343)
T ss_dssp EEEEEEECTTSCEEEEEEEEEECS--TTCCEEEEEECTTSSEEEEEETTTTEEEEEESSCTTSCCEEEEEEECSC--TTC
T ss_pred EEEEEEecCCCceeeecccccccC--CCCCcceEEECCCCCEEEEEeCCCCEEEEEEecCCCCcEEEEeeccccC--ccc
Confidence 789999987 6654432 22111 135788999999997 89999888988888864 3332111100110 000
Q ss_pred cCccccCeEEEccCc-eEEEEeCCCCeEEEEeCC--CCCCccceeEEEEecCCCCCCCCeEEEeCCCe-EEEEeCC--ce
Q 020019 198 KNLVGLNGIVYHPDG-FLIVIHTFSGNLFKIDIV--DGVGEGEEIKLIRVAGGPLSFGDGLELLSPTK-LVVAGNP--SA 271 (332)
Q Consensus 198 ~~~~~~nGi~~~~dG-~Lyva~~~~~~i~~id~~--~~~~~~~~~~~v~~~g~~~~~pdGi~~~~dG~-l~va~~~--~~ 271 (332)
.....+.+++++||| .||++....+.|..++++ +++. ..+..+... ..|.+++++++|+ ||+++.. ..
T Consensus 228 ~~~~~~~~i~~s~dg~~l~v~~~~~~~i~v~d~~~~~~~~--~~~~~~~~~----~~~~~~~~s~dg~~l~~~~~~~~~v 301 (343)
T 1ri6_A 228 SDTRWAADIHITPDGRHLYACDRTASLITVFSVSEDGSVL--SKEGFQPTE----TQPRGFNVDHSGKYLIAAGQKSHHI 301 (343)
T ss_dssp CSCCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSCCE--EEEEEEECS----SSCCCEEECTTSSEEEEECTTTCEE
T ss_pred cccCCccceEECCCCCEEEEEecCCCEEEEEEEcCCCCce--EEeeeecCC----CccceEEECCCCCEEEEecCCCCeE
Confidence 112346689999999 999999888999888887 3311 122223322 3489999999987 7777632 22
Q ss_pred EEE--EcCCCceEEEEEeeecCCCcccceEEEE
Q 020019 272 RLV--ESSDGWETAAVVAKFSGPVHRLATAATV 302 (332)
Q Consensus 272 ~~v--~~~dg~~~~~~~~~~~~~~~~~pt~va~ 302 (332)
.+. ....| +. +.+..+.. ...|.++++
T Consensus 302 ~v~~~d~~~g-~~-~~~~~~~~--g~~p~~i~~ 330 (343)
T 1ri6_A 302 SVYEIVGEQG-LL-HEKGRYAV--GQGPMWVVV 330 (343)
T ss_dssp EEEEEETTTT-EE-EEEEEEEC--SSSCCEEEE
T ss_pred EEEEEcCCCc-ee-eEcccccc--CCCCeeEEE
Confidence 222 33345 33 33334432 356899998
|
| >3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus} | Back alignment and structure |
|---|
Probab=99.45 E-value=3.9e-12 Score=112.37 Aligned_cols=182 Identities=14% Similarity=0.120 Sum_probs=125.4
Q ss_pred cceEEEeCCCCeEEEEEeCcCCCccceEEEEECCCCcEEEEEecCCCCCCCCCccceEECCCCcEEEEeCCCCeEEEEcC
Q 020019 99 SLGLVLDHPRNRLLVVAADVFGNKYSAVAAYDLSTWNRLFLTQLSGPSDGKSCADDVTVDAEGNAYVTDVTGSKIWKVGV 178 (332)
Q Consensus 99 ~~gi~vd~~~g~l~v~~~~~~~~~~~~l~~~d~~~g~~~~~~~l~~~~~~~~~~ndiavd~dG~lyvtd~~~~~I~~v~~ 178 (332)
..||.++. ++||++... .+.|.++|+++|++.... ++ ...|.-|++++.+ .||+.++..+.++++|+
T Consensus 57 tqGL~~~~--~~Ly~stG~-----~g~v~~iD~~Tgkv~~~~-l~----~~~FgeGit~~g~-~Ly~ltw~~~~v~V~D~ 123 (268)
T 3nok_A 57 TQGLVFHQ--GHFFESTGH-----QGTLRQLSLESAQPVWME-RL----GNIFAEGLASDGE-RLYQLTWTEGLLFTWSG 123 (268)
T ss_dssp EEEEEEET--TEEEEEETT-----TTEEEECCSSCSSCSEEE-EC----TTCCEEEEEECSS-CEEEEESSSCEEEEEET
T ss_pred cceEEEEC--CEEEEEcCC-----CCEEEEEECCCCcEEeEE-CC----CCcceeEEEEeCC-EEEEEEccCCEEEEEEC
Confidence 47999984 899999874 346999999999988777 63 1457778988754 79999999999999998
Q ss_pred C-CceEEEecCCCCCCcccccCccccCeEEEccCc-eEEEEeCCCCeEEEEeCCCCCCccceeEEEEec--CCCCCCCCe
Q 020019 179 K-GEFLSIISSPLFTPKEWYKNLVGLNGIVYHPDG-FLIVIHTFSGNLFKIDIVDGVGEGEEIKLIRVA--GGPLSFGDG 254 (332)
Q Consensus 179 ~-g~~~~~~~~~~~~~p~~~~~~~~~nGi~~~~dG-~Lyva~~~~~~i~~id~~~~~~~~~~~~~v~~~--g~~~~~pdG 254 (332)
+ .+....+..+ ...-|++. || +||+++ .+++|+.+|+++.+ .+..+.+. +.++..+..
T Consensus 124 ~Tl~~~~ti~~~-----------~eGwGLt~--Dg~~L~vSd-Gs~~l~~iDp~T~~----v~~~I~V~~~g~~v~~lNe 185 (268)
T 3nok_A 124 MPPQRERTTRYS-----------GEGWGLCY--WNGKLVRSD-GGTMLTFHEPDGFA----LVGAVQVKLRGQPVELINE 185 (268)
T ss_dssp TTTEEEEEEECS-----------SCCCCEEE--ETTEEEEEC-SSSEEEEECTTTCC----EEEEEECEETTEECCCEEE
T ss_pred CcCcEEEEEeCC-----------CceeEEec--CCCEEEEEC-CCCEEEEEcCCCCe----EEEEEEeCCCCcccccccc
Confidence 7 4544333211 11246664 56 999999 59999999999873 56666653 234456678
Q ss_pred EEEeCCCeEEEEeCCc--eEEEEcCCCceEEEEEee-e-------cCCCcccceEEEE--ECCeEEEEEe
Q 020019 255 LELLSPTKLVVAGNPS--ARLVESSDGWETAAVVAK-F-------SGPVHRLATAATV--KDGRVYLNHM 312 (332)
Q Consensus 255 i~~~~dG~l~va~~~~--~~~v~~~dg~~~~~~~~~-~-------~~~~~~~pt~va~--~~g~lyv~~~ 312 (332)
|++. +|+||+..... +.++...+|..++.+.-. + ..+....|.++|+ .+++|||+.+
T Consensus 186 Le~~-dG~lyanvw~s~~I~vIDp~TG~V~~~Idl~~L~~~~~~~~~~~~~vlNGIA~dp~~~rlfVTGK 254 (268)
T 3nok_A 186 LECA-NGVIYANIWHSSDVLEIDPATGTVVGVIDASALTRAVAGQVTNPEAVLNGIAVEPGSGRIFMTGK 254 (268)
T ss_dssp EEEE-TTEEEEEETTCSEEEEECTTTCBEEEEEECHHHHHHHTTTCCCTTCCEEEEEECTTTCCEEEEET
T ss_pred cEEe-CCEEEEEECCCCeEEEEeCCCCcEEEEEECCCCcccccccccCcCCceEEEEEcCCCCEEEEeCC
Confidence 8887 78999887543 333455667222222211 1 0112357789999 4789999765
|
| >1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A* | Back alignment and structure |
|---|
Probab=99.44 E-value=1.3e-10 Score=114.10 Aligned_cols=233 Identities=15% Similarity=0.144 Sum_probs=154.2
Q ss_pred ccccceEEcCCCCEEEEEecCCeEEEEEC--CCCCCCccceeeeEEecccCcCCCccceEEEeC----CCCeEEEEEeCc
Q 020019 45 FFRECAKWDDSGRRFIVSFLDGGIGQVAV--PDDYPPGTVLEEVTLVKDLELTGNGSLGLVLDH----PRNRLLVVAADV 118 (332)
Q Consensus 45 ~~pegia~d~~g~~~~~~~~~g~I~~vd~--~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~vd~----~~g~l~v~~~~~ 118 (332)
..|++++++++|+.+|+...++.|..+|. .+++ +.. ++. .+..|.++++++ +...||+++..
T Consensus 179 ~~~~~v~~spdg~~l~v~~~d~~V~v~D~~~~t~~----~~~--~i~-----~g~~p~~va~sp~~~~dg~~l~v~~~~- 246 (543)
T 1nir_A 179 YAVHISRMSASGRYLLVIGRDARIDMIDLWAKEPT----KVA--EIK-----IGIEARSVESSKFKGYEDRYTIAGAYW- 246 (543)
T ss_dssp TTEEEEEECTTSCEEEEEETTSEEEEEETTSSSCE----EEE--EEE-----CCSEEEEEEECCSTTCTTTEEEEEEEE-
T ss_pred cccceEEECCCCCEEEEECCCCeEEEEECcCCCCc----EEE--EEe-----cCCCcceEEeCCCcCCCCCEEEEEEcc-
Confidence 34789999999998877755699999998 4443 111 221 134789999999 85678888742
Q ss_pred CCCccceEEEEECCCCcEEEEEecCCC-CC-----CCCCccceEECCCC-cEEEEeCCCCeEEEEcCCC-ceEE--EecC
Q 020019 119 FGNKYSAVAAYDLSTWNRLFLTQLSGP-SD-----GKSCADDVTVDAEG-NAYVTDVTGSKIWKVGVKG-EFLS--IISS 188 (332)
Q Consensus 119 ~~~~~~~l~~~d~~~g~~~~~~~l~~~-~~-----~~~~~ndiavd~dG-~lyvtd~~~~~I~~v~~~g-~~~~--~~~~ 188 (332)
.+.+.+||.++++....+...+. .. ....+..++++++| .+|++....+.|+.++... +... .+..
T Consensus 247 ----~~~v~v~D~~t~~~~~~i~~~g~~~~~~~~~~~~~v~~i~~s~~~~~~~vs~~~~g~i~vvd~~~~~~l~~~~i~~ 322 (543)
T 1nir_A 247 ----PPQFAIMDGETLEPKQIVSTRGMTVDTQTYHPEPRVAAIIASHEHPEFIVNVKETGKVLLVNYKDIDNLTVTSIGA 322 (543)
T ss_dssp ----SSEEEEEETTTCCEEEEEECCEECSSSCCEESCCCEEEEEECSSSSEEEEEETTTTEEEEEECTTSSSCEEEEEEC
T ss_pred ----CCeEEEEeccccccceeecccCcccCccccccCCceEEEEECCCCCEEEEEECCCCeEEEEEecCCCcceeEEecc
Confidence 35688999999988877665210 00 12367789999986 5889999999999999753 2211 1211
Q ss_pred CCCCCcccccCccccCeEEEccCc-eEEEEeCCCCeEEEEeCCCCCCccceeEEEEecCCCCCCC-CeEEE-eCC-CeEE
Q 020019 189 PLFTPKEWYKNLVGLNGIVYHPDG-FLIVIHTFSGNLFKIDIVDGVGEGEEIKLIRVAGGPLSFG-DGLEL-LSP-TKLV 264 (332)
Q Consensus 189 ~~~~~p~~~~~~~~~nGi~~~~dG-~Lyva~~~~~~i~~id~~~~~~~~~~~~~v~~~g~~~~~p-dGi~~-~~d-G~l~ 264 (332)
...+.+++|+||| ++|+++..+++|..+|+.+++ .+..+... ..+.| .|+.+ +++ |.+|
T Consensus 323 -----------~~~~~~~~~spdg~~l~va~~~~~~v~v~D~~tg~----l~~~i~~g--~~ph~g~g~~~~~p~~g~~~ 385 (543)
T 1nir_A 323 -----------APFLHDGGWDSSHRYFMTAANNSNKVAVIDSKDRR----LSALVDVG--KTPHPGRGANFVHPKYGPVW 385 (543)
T ss_dssp -----------CSSCCCEEECTTSCEEEEEEGGGTEEEEEETTTTE----EEEEEECS--SSBCCTTCEEEEETTTEEEE
T ss_pred -----------CcCccCceECCCCCEEEEEecCCCeEEEEECCCCe----EEEeeccC--CCCCCCCCcccCCCCCccEE
Confidence 1347799999999 899999999999999999873 45555543 11222 35554 676 8899
Q ss_pred EEeC---CceEEEEcCCC------ceEEEEEeeecCCCcccceEEEE--ECCeEEEEEecC
Q 020019 265 VAGN---PSARLVESSDG------WETAAVVAKFSGPVHRLATAATV--KDGRVYLNHMLG 314 (332)
Q Consensus 265 va~~---~~~~~v~~~dg------~~~~~~~~~~~~~~~~~pt~va~--~~g~lyv~~~~g 314 (332)
+++. +.+.++...+. |+ ++..+... ...+..+++ ++.+||+.++++
T Consensus 386 ~s~~~~d~~V~v~d~~~~~~~~~~~~---~v~~l~~~-g~~~~~v~~~pdg~~l~v~~~~~ 442 (543)
T 1nir_A 386 STSHLGDGSISLIGTDPKNHPQYAWK---KVAELQGQ-GGGSLFIKTHPKSSHLYVDTTFN 442 (543)
T ss_dssp EEEBSSSSEEEEEECCTTTCTTTBTS---EEEEEECS-CSCCCCEECCTTCCEEEECCTTC
T ss_pred EeccCCCceEEEEEeCCCCCchhcCe---EEEEEEcC-CCCceEEEcCCCCCcEEEecCCC
Confidence 9964 23343444431 44 33434322 123455777 568999977543
|
| >3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans} | Back alignment and structure |
|---|
Probab=99.42 E-value=1.1e-10 Score=109.61 Aligned_cols=221 Identities=14% Similarity=0.114 Sum_probs=148.9
Q ss_pred cccceEEcCCCCEEEEEecCCeEEEEECCCCCCCccceeeeEEecccCcCCCccceEEEeCCCCeEEEEEeCcCCCccce
Q 020019 46 FRECAKWDDSGRRFIVSFLDGGIGQVAVPDDYPPGTVLEEVTLVKDLELTGNGSLGLVLDHPRNRLLVVAADVFGNKYSA 125 (332)
Q Consensus 46 ~pegia~d~~g~~~~~~~~~g~I~~vd~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~vd~~~g~l~v~~~~~~~~~~~~ 125 (332)
...++++++++++|++...++.|..++..+++. .. .+. . .+..+.+++++++...+|++... .+.
T Consensus 171 ~v~~~~~~~~~~~~~s~~~d~~v~~~d~~~~~~----~~--~~~-~---~~~~~~~~~~~~~~~~l~~~~~~-----~~~ 235 (433)
T 3bws_A 171 FVETISIPEHNELWVSQMQANAVHVFDLKTLAY----KA--TVD-L---TGKWSKILLYDPIRDLVYCSNWI-----SED 235 (433)
T ss_dssp EEEEEEEGGGTEEEEEEGGGTEEEEEETTTCCE----EE--EEE-C---SSSSEEEEEEETTTTEEEEEETT-----TTE
T ss_pred ceeEEEEcCCCEEEEEECCCCEEEEEECCCceE----EE--EEc-C---CCCCeeEEEEcCCCCEEEEEecC-----CCc
Confidence 345689999999888887789999999876652 11 222 1 12367899999975567677632 357
Q ss_pred EEEEECCCCcEEEEEecCCCCCCCCCccceEECCCCc-EEEEeC-------CCCeEEEEcCC-CceEEEecCCCCCCccc
Q 020019 126 VAAYDLSTWNRLFLTQLSGPSDGKSCADDVTVDAEGN-AYVTDV-------TGSKIWKVGVK-GEFLSIISSPLFTPKEW 196 (332)
Q Consensus 126 l~~~d~~~g~~~~~~~l~~~~~~~~~~ndiavd~dG~-lyvtd~-------~~~~I~~v~~~-g~~~~~~~~~~~~~p~~ 196 (332)
|.+||+++++....... ...+.+++++|+|+ +|++.. ..+.|+.++.. ++.......
T Consensus 236 i~~~d~~~~~~~~~~~~------~~~~~~~~~~~~g~~l~~~~~~~~~~~~~dg~i~~~d~~~~~~~~~~~~-------- 301 (433)
T 3bws_A 236 ISVIDRKTKLEIRKTDK------IGLPRGLLLSKDGKELYIAQFSASNQESGGGRLGIYSMDKEKLIDTIGP-------- 301 (433)
T ss_dssp EEEEETTTTEEEEECCC------CSEEEEEEECTTSSEEEEEEEESCTTCSCCEEEEEEETTTTEEEEEEEE--------
T ss_pred EEEEECCCCcEEEEecC------CCCceEEEEcCCCCEEEEEECCCCccccCCCeEEEEECCCCcEEeeccC--------
Confidence 99999998876543322 24588999999985 677664 35688899976 444333211
Q ss_pred ccCccccCeEEEccCc-eEEEEeCCCCeEEEEeCCCCCCccceeEEEEecCCCCCCCCeEEEeCCCe-EEEEeCC-----
Q 020019 197 YKNLVGLNGIVYHPDG-FLIVIHTFSGNLFKIDIVDGVGEGEEIKLIRVAGGPLSFGDGLELLSPTK-LVVAGNP----- 269 (332)
Q Consensus 197 ~~~~~~~nGi~~~~dG-~Lyva~~~~~~i~~id~~~~~~~~~~~~~v~~~g~~~~~pdGi~~~~dG~-l~va~~~----- 269 (332)
...+.+++++|+| .||++....++|..++++++ +.+..+... ..+.+++++++|+ ||++...
T Consensus 302 ---~~~~~~~~~~~~g~~l~~~~~~~~~v~v~d~~~~----~~~~~~~~~----~~~~~~~~s~dg~~l~~~~~~~~~~~ 370 (433)
T 3bws_A 302 ---PGNKRHIVSGNTENKIYVSDMCCSKIEVYDLKEK----KVQKSIPVF----DKPNTIALSPDGKYLYVSCRGPNHPT 370 (433)
T ss_dssp ---EECEEEEEECSSTTEEEEEETTTTEEEEEETTTT----EEEEEEECS----SSEEEEEECTTSSEEEEEECCCCCTT
T ss_pred ---CCCcceEEECCCCCEEEEEecCCCEEEEEECCCC----cEEEEecCC----CCCCeEEEcCCCCEEEEEecCCCccc
Confidence 1246789999999 89999999999999999876 234444422 4678999999986 7777532
Q ss_pred -----------ceEEEEcCCCceEEEEEeeecCCCcccceEEEE-EC-CeEEEEEe
Q 020019 270 -----------SARLVESSDGWETAAVVAKFSGPVHRLATAATV-KD-GRVYLNHM 312 (332)
Q Consensus 270 -----------~~~~v~~~dg~~~~~~~~~~~~~~~~~pt~va~-~~-g~lyv~~~ 312 (332)
...+....++ ++...+.. ...|+++++ .+ ..||++..
T Consensus 371 ~~~~~~g~~dg~v~~~d~~~~----~~~~~~~~--~~~~~~~~~s~dg~~l~~~~~ 420 (433)
T 3bws_A 371 EGYLKKGLVLGKVYVIDTTTD----TVKEFWEA--GNQPTGLDVSPDNRYLVISDF 420 (433)
T ss_dssp TCTTSCCSSCCEEEEEETTTT----EEEEEEEC--SSSEEEEEECTTSCEEEEEET
T ss_pred cccccccccceEEEEEECCCC----cEEEEecC--CCCCceEEEcCCCCEEEEEEC
Confidence 3344445555 33333332 345788998 44 45666554
|
| >3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus} | Back alignment and structure |
|---|
Probab=99.41 E-value=4e-11 Score=113.93 Aligned_cols=244 Identities=10% Similarity=0.032 Sum_probs=139.9
Q ss_pred CCCC-EEEEEecC----CeEEEEECCCCCCCccceeeeEEecccCcCCCccceEEEeCCCCeEEEEEeCcC----CCccc
Q 020019 54 DSGR-RFIVSFLD----GGIGQVAVPDDYPPGTVLEEVTLVKDLELTGNGSLGLVLDHPRNRLLVVAADVF----GNKYS 124 (332)
Q Consensus 54 ~~g~-~~~~~~~~----g~I~~vd~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~vd~~~g~l~v~~~~~~----~~~~~ 124 (332)
++++ +|+++... +.|.++|+.+.+ +.. ++. .|..| ||+++++..+|||++.... ....+
T Consensus 82 ~~~~~vyV~n~~~~~~~~~VsVID~~t~~----vv~--~I~-----vG~~P-gia~SpDgk~lyVan~~~~~~~~G~~~~ 149 (426)
T 3c75_H 82 PDARRVYIQDPAHFAAITQQFVIDGSTGR----ILG--MTD-----GGFLP-HPVAAEDGSFFAQASTVFERIARGKRTD 149 (426)
T ss_dssp CCTTEEEEEECTTTCSSEEEEEEETTTTE----EEE--EEE-----ECSSC-EEEECTTSSCEEEEEEEEEETTEEEEEE
T ss_pred CCCCEEEEECCCcCCCCCeEEEEECCCCE----EEE--EEE-----CCCCC-ceEECCCCCEEEEEeccccccccCCCCC
Confidence 4555 55555533 799999998775 222 221 12368 9999998778999974210 00135
Q ss_pred eEEEEECCCCcEEEEEecCCCCC--CCCCccceEECCCCc-EEEEeCC-CCeEEEEcCC-CceEEEecCCCCC--Ccc--
Q 020019 125 AVAAYDLSTWNRLFLTQLSGPSD--GKSCADDVTVDAEGN-AYVTDVT-GSKIWKVGVK-GEFLSIISSPLFT--PKE-- 195 (332)
Q Consensus 125 ~l~~~d~~~g~~~~~~~l~~~~~--~~~~~ndiavd~dG~-lyvtd~~-~~~I~~v~~~-g~~~~~~~~~~~~--~p~-- 195 (332)
.|.++|.+++++...+.+.++.. ....|.+++++|||+ +||++.. .+.|.+||.. ++....+..+... .|.
T Consensus 150 ~VsviD~~t~~vv~~I~v~g~~r~~~g~~P~~~~~spDGk~lyV~n~~~~~~VsVID~~t~kvv~~I~v~g~~~~~p~g~ 229 (426)
T 3c75_H 150 YVEVFDPVTFLPIADIELPDAPRFLVGTYQWMNALTPDNKNLLFYQFSPAPAVGVVDLEGKTFDRMLDVPDCYHIFPASP 229 (426)
T ss_dssp EEEEECTTTCCEEEEEEETTCCCCCBSCCGGGSEECTTSSEEEEEECSSSCEEEEEETTTTEEEEEEECCSEEEEEEEET
T ss_pred EEEEEECCCCcEEEEEECCCccccccCCCcceEEEcCCCCEEEEEecCCCCeEEEEECCCCeEEEEEEcCCceeeccCCC
Confidence 68999999999988887742111 125799999999985 9999875 7899999987 3443222211100 000
Q ss_pred ----------------c------------ccCcccc--CeEEEccCc-eEEEEeCCCCeEEEEeCCCCCCccceeEEEEe
Q 020019 196 ----------------W------------YKNLVGL--NGIVYHPDG-FLIVIHTFSGNLFKIDIVDGVGEGEEIKLIRV 244 (332)
Q Consensus 196 ----------------~------------~~~~~~~--nGi~~~~dG-~Lyva~~~~~~i~~id~~~~~~~~~~~~~v~~ 244 (332)
. ......| ..+.++++| .+|+... .++++.+|..+.+. ..+..+..
T Consensus 230 ~~~v~~~~dG~~~~V~~~~~~v~~~~~~~~~v~~~p~~~~~~~~~dg~~~~~~s~-~g~V~ViD~~~~~~--~v~~~~~~ 306 (426)
T 3c75_H 230 TVFYMNCRDGSLARVDFADGETKVTNTEVFHTEDELLINHPAFSLRSGRLVWPTY-TGKIFQADLTAEGA--TFRAPIEA 306 (426)
T ss_dssp TEEEEEETTSSEEEEECCTTCCEEEECCCCSCTTSCBCSCCEECTTTCEEEEEBT-TSEEEEEEECSSCE--EECCCEES
T ss_pred cEEEEEcCCCCEEEEECCCCcEEEEeeeeeccCCCceeeEeeecCCCCEEEEEeC-CCcEEEEeccCCce--EEeeeeee
Confidence 0 0000000 123445555 5555543 45666666654311 00011111
Q ss_pred cC-C--CC-CCCCe---EEEeCC-CeEEEEeC-----------CceEEEEcCCCceEEEEEeeecCCCcccceEEEE-E-
Q 020019 245 AG-G--PL-SFGDG---LELLSP-TKLVVAGN-----------PSARLVESSDGWETAAVVAKFSGPVHRLATAATV-K- 303 (332)
Q Consensus 245 ~g-~--~~-~~pdG---i~~~~d-G~l~va~~-----------~~~~~v~~~dg~~~~~~~~~~~~~~~~~pt~va~-~- 303 (332)
.. . .. ..|.| +++++| +++||++. +...++..... ++++.+..+ ..|.++++ .
T Consensus 307 ~~~~~i~~g~~p~g~~~va~s~dg~rlyVa~~~~~~gthk~~s~~VsVID~~T~----kvv~~I~vg--~~P~gia~spD 380 (426)
T 3c75_H 307 LTEAERADDWRPGGWQQTAYHRQSDRIYLLVDQRDEWKHKAASRFVVVLNAETG----ERINKIELG--HEIDSINVSQD 380 (426)
T ss_dssp SCTTTGGGTEEECSSSCEEEEGGGTEEEEEEEECCTTCTTSCEEEEEEEETTTC----CEEEEEEEE--EEECEEEECCS
T ss_pred ccccccccccccCCceeeEEcCCCCEEEEEecccccccccCCCCEEEEEECCCC----eEEEEEECC--CCcCeEEEccC
Confidence 00 0 00 13555 899988 67999962 12344455555 455554432 35899999 4
Q ss_pred CC-eEEEEEecCcccc
Q 020019 304 DG-RVYLNHMLGFGYP 318 (332)
Q Consensus 304 ~g-~lyv~~~~g~~~~ 318 (332)
++ +||++++....++
T Consensus 381 g~~~lyv~n~~s~~Vs 396 (426)
T 3c75_H 381 AEPLLYALSAGTQTLH 396 (426)
T ss_dssp SSCEEEEEETTTTEEE
T ss_pred CCEEEEEEcCCCCeEE
Confidence 45 6888888777665
|
| >3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A | Back alignment and structure |
|---|
Probab=99.41 E-value=1.9e-10 Score=105.93 Aligned_cols=232 Identities=13% Similarity=0.126 Sum_probs=134.2
Q ss_pred CCccccceEEcCCCCEEEE-EecCCeEEEEECCCCCCCccceeeeEEecccCc-------CCCccceEEEeCCCCeEEEE
Q 020019 43 SSFFRECAKWDDSGRRFIV-SFLDGGIGQVAVPDDYPPGTVLEEVTLVKDLEL-------TGNGSLGLVLDHPRNRLLVV 114 (332)
Q Consensus 43 ~~~~pegia~d~~g~~~~~-~~~~g~I~~vd~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~gi~vd~~~g~l~v~ 114 (332)
.+..|..+++ +|+.+++ +..++.|..++.........+. ......+. ...++.+++++|+...||++
T Consensus 98 ~~~~p~~~~~--dg~~l~~~~~~~~~v~~~~~~~~g~~~~~~---~~~~~~g~~~~~~~~~~~~~~~~~~spdg~~l~~~ 172 (361)
T 3scy_A 98 MGADPCYLTT--NGKNIVTANYSGGSITVFPIGQDGALLPAS---DVIEFKGSGPDKERQTMPHLHCVRITPDGKYLLAD 172 (361)
T ss_dssp SSSCEEEEEE--CSSEEEEEETTTTEEEEEEBCTTSCBCSCS---EEEECCCCCSCTTTCSSCCEEEEEECTTSSEEEEE
T ss_pred CCCCcEEEEE--CCCEEEEEECCCCEEEEEEeCCCCcCcccc---eeEEccCCCCCccccCCCcceEEEECCCCCEEEEE
Confidence 3457778888 6665544 4667888888875433110011 11111110 01245789999973348888
Q ss_pred EeCcCCCccceEEEEECCC--C----c-EEE-----EEecCCCCCCCCCccceEECCCCc-EEEEeCCCCeEEEEcCC-C
Q 020019 115 AADVFGNKYSAVAAYDLST--W----N-RLF-----LTQLSGPSDGKSCADDVTVDAEGN-AYVTDVTGSKIWKVGVK-G 180 (332)
Q Consensus 115 ~~~~~~~~~~~l~~~d~~~--g----~-~~~-----~~~l~~~~~~~~~~ndiavd~dG~-lyvtd~~~~~I~~v~~~-g 180 (332)
+.. ...+.+|+.+. + + +.. ...+. ....|++++++|||+ +|+++...+.|..++.+ |
T Consensus 173 ~~~-----~~~v~v~~~~~~~~~~~~~~l~~~~~~~~~~~~----~~~~~~~~~~spdg~~l~v~~~~~~~v~v~~~~~g 243 (361)
T 3scy_A 173 DLG-----TDQIHKFNINPNANADNKEKFLTKGTPEAFKVA----PGSGPRHLIFNSDGKFAYLINEIGGTVIAFRYADG 243 (361)
T ss_dssp ETT-----TTEEEEEEECTTCCTTTCCCCEEEEEEEEEECC----TTCCEEEEEECTTSSEEEEEETTTCEEEEEEEETT
T ss_pred eCC-----CCEEEEEEEcCCCCcccccceeecccccceecC----CCCCCeEEEEcCCCCEEEEEcCCCCeEEEEEecCC
Confidence 753 34677776553 2 2 221 22221 235788999999996 89999888988888864 4
Q ss_pred ceEEEecCCCCCCcccccCccccCeEEEccCc-eEEEEeCC-CCeEEEEeC--CCCCCccceeEEEEecCCCCCCCCeEE
Q 020019 181 EFLSIISSPLFTPKEWYKNLVGLNGIVYHPDG-FLIVIHTF-SGNLFKIDI--VDGVGEGEEIKLIRVAGGPLSFGDGLE 256 (332)
Q Consensus 181 ~~~~~~~~~~~~~p~~~~~~~~~nGi~~~~dG-~Lyva~~~-~~~i~~id~--~~~~~~~~~~~~v~~~g~~~~~pdGi~ 256 (332)
+........... ....++.+|+++||| .||+++.. .++|..++. .+++. ..+..+.. ...|.+++
T Consensus 244 ~~~~~~~~~~~~-----~~~~~~~~i~~spdg~~l~v~~~~~~~~i~v~~~~~~~g~~--~~~~~~~~----g~~~~~~~ 312 (361)
T 3scy_A 244 MLDEIQTVAADT-----VNAQGSGDIHLSPDGKYLYASNRLKADGVAIFKVDETNGTL--TKVGYQLT----GIHPRNFI 312 (361)
T ss_dssp EEEEEEEEESCS-----SCCCCEEEEEECTTSSEEEEEECSSSCEEEEEEECTTTCCE--EEEEEEEC----SSCCCEEE
T ss_pred ceEEeEEEecCC-----CCCCCcccEEECCCCCEEEEECCCCCCEEEEEEEcCCCCcE--EEeeEecC----CCCCceEE
Confidence 432221111111 123457899999999 89999988 777766555 44521 12222222 25689999
Q ss_pred EeCCCe-EEEEeCC-c-eEE--EEcCCCceEEEEEeeecCCCcccceEEEEE
Q 020019 257 LLSPTK-LVVAGNP-S-ARL--VESSDGWETAAVVAKFSGPVHRLATAATVK 303 (332)
Q Consensus 257 ~~~dG~-l~va~~~-~-~~~--v~~~dg~~~~~~~~~~~~~~~~~pt~va~~ 303 (332)
+++||+ ||+++.. . ..+ +...+| +...+...+. ...|+|++|.
T Consensus 313 ~spdg~~l~~~~~~~~~v~v~~~d~~~g-~~~~~~~~~~---~~~p~~v~~~ 360 (361)
T 3scy_A 313 ITPNGKYLLVACRDTNVIQIFERDQATG-LLTDIKKDIK---VDKPVCLKFV 360 (361)
T ss_dssp ECTTSCEEEEEETTTTEEEEEEECTTTC-CEEECSCCEE---CSSEEEEEEE
T ss_pred ECCCCCEEEEEECCCCCEEEEEEECCCC-cEeecceeee---CCCCeEEEEc
Confidence 999987 7887633 2 222 223445 3322222222 3468888773
|
| >1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B* | Back alignment and structure |
|---|
Probab=99.41 E-value=3e-10 Score=102.43 Aligned_cols=225 Identities=15% Similarity=0.088 Sum_probs=140.9
Q ss_pred cccceEEcCCCCEE-EEEecCCeEEEEECCCCCCCccceeeeEEecccC--cCCCccceEEEeCCCCeEEEEEeCcC--C
Q 020019 46 FRECAKWDDSGRRF-IVSFLDGGIGQVAVPDDYPPGTVLEEVTLVKDLE--LTGNGSLGLVLDHPRNRLLVVAADVF--G 120 (332)
Q Consensus 46 ~pegia~d~~g~~~-~~~~~~g~I~~vd~~~~~~~~~~~~~~~~~~~~~--~~~~~~~gi~vd~~~g~l~v~~~~~~--~ 120 (332)
.|.+++++++|+.+ ++....++|++++..+++. .. .+. .+. ..+..+.+++++++..+||++..... .
T Consensus 35 ~~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~~~----~~--~~~-~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~ 107 (337)
T 1pby_B 35 TPMVPMVAPGGRIAYATVNKSESLVKIDLVTGET----LG--RID-LSTPEERVKSLFGAALSPDGKTLAIYESPVRLEL 107 (337)
T ss_dssp CCCCEEECTTSSEEEEEETTTTEEEEEETTTCCE----EE--EEE-CCBTTEEEECTTCEEECTTSSEEEEEEEEEEECS
T ss_pred CccceEEcCCCCEEEEEeCCCCeEEEEECCCCCe----Ee--eEE-cCCcccccccccceEECCCCCEEEEEeccccccc
Confidence 58999999999755 4556678999999887652 11 221 111 00125789999997447888862100 0
Q ss_pred C----ccceEEEEECCCCcEEEEEecCCCCCCCCCccceEECCCCc-EEEEeCCCCeEEEEcCC-CceEEEecCCCCCCc
Q 020019 121 N----KYSAVAAYDLSTWNRLFLTQLSGPSDGKSCADDVTVDAEGN-AYVTDVTGSKIWKVGVK-GEFLSIISSPLFTPK 194 (332)
Q Consensus 121 ~----~~~~l~~~d~~~g~~~~~~~l~~~~~~~~~~ndiavd~dG~-lyvtd~~~~~I~~v~~~-g~~~~~~~~~~~~~p 194 (332)
. ..+.|.+||.++++....+.. ...+++++++|+|+ +|++ .+.|+.++.. ++....+.....
T Consensus 108 ~~~~~~~~~i~v~d~~~~~~~~~~~~------~~~~~~~~~s~dg~~l~~~---~~~i~~~d~~~~~~~~~~~~~~~--- 175 (337)
T 1pby_B 108 THFEVQPTRVALYDAETLSRRKAFEA------PRQITMLAWARDGSKLYGL---GRDLHVMDPEAGTLVEDKPIQSW--- 175 (337)
T ss_dssp SCEEECCCEEEEEETTTTEEEEEEEC------CSSCCCEEECTTSSCEEEE---SSSEEEEETTTTEEEEEECSTTT---
T ss_pred ccccccCceEEEEECCCCcEEEEEeC------CCCcceeEECCCCCEEEEe---CCeEEEEECCCCcEeeeeecccc---
Confidence 0 125799999998887655543 24578899999986 8888 4789999976 444433322111
Q ss_pred ccccCccccCeEEEccCc-eEEEEeCCCC-----------------------eEEEEeCCCCCCccceeEEEEecCCCCC
Q 020019 195 EWYKNLVGLNGIVYHPDG-FLIVIHTFSG-----------------------NLFKIDIVDGVGEGEEIKLIRVAGGPLS 250 (332)
Q Consensus 195 ~~~~~~~~~nGi~~~~dG-~Lyva~~~~~-----------------------~i~~id~~~~~~~~~~~~~v~~~g~~~~ 250 (332)
+..++++||| .||++....+ +|+.+++.+++ ...+... ....
T Consensus 176 --------~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~-----~~~~~~~-~~~~ 241 (337)
T 1pby_B 176 --------EAETYAQPDVLAVWNQHESSGVMATPFYTARKDIDPADPTAYRTGLLTMDLETGE-----MAMREVR-IMDV 241 (337)
T ss_dssp --------TTTTBCCCBCCCCCCCCTTTTEEEEEEEEEBTTSCTTSGGGEEEEEEEEETTTCC-----EEEEEEE-ECSS
T ss_pred --------CCCceeCCCccEEeeeccCCCceeeeeeccccccccccccccccceEEEeCCCCC-----ceEeecC-CCCC
Confidence 1233678888 7777665544 46888888763 2233332 1224
Q ss_pred CCCeEEEeCCCe-EEEEeCCceEEEEcCCCceEEEEEeeecCCCcccceEEEE-E-CCeEEEE
Q 020019 251 FGDGLELLSPTK-LVVAGNPSARLVESSDGWETAAVVAKFSGPVHRLATAATV-K-DGRVYLN 310 (332)
Q Consensus 251 ~pdGi~~~~dG~-l~va~~~~~~~v~~~dg~~~~~~~~~~~~~~~~~pt~va~-~-~g~lyv~ 310 (332)
.|.++++++||+ +|++ +....++...++ ++...+..+ ..|.++++ . +++||++
T Consensus 242 ~~~~~~~s~dg~~l~~~-~~~v~~~d~~~~----~~~~~~~~~--~~~~~~~~s~dg~~l~~~ 297 (337)
T 1pby_B 242 FYFSTAVNPAKTRAFGA-YNVLESFDLEKN----ASIKRVPLP--HSYYSVNVSTDGSTVWLG 297 (337)
T ss_dssp CEEEEEECTTSSEEEEE-ESEEEEEETTTT----EEEEEEECS--SCCCEEEECTTSCEEEEE
T ss_pred ceeeEEECCCCCEEEEe-CCeEEEEECCCC----cCcceecCC--CceeeEEECCCCCEEEEE
Confidence 678899999976 6666 444454555555 333333322 35788888 4 4567775
|
| >1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A* | Back alignment and structure |
|---|
Probab=99.41 E-value=2e-10 Score=112.68 Aligned_cols=231 Identities=17% Similarity=0.099 Sum_probs=149.9
Q ss_pred EEcCCCCEEEEEecCCeEEEEECCCCCCCccceeeeEEecccCcCCCccceEEEeCCCCeEEEEEeCcCCCccceEEEEE
Q 020019 51 KWDDSGRRFIVSFLDGGIGQVAVPDDYPPGTVLEEVTLVKDLELTGNGSLGLVLDHPRNRLLVVAADVFGNKYSAVAAYD 130 (332)
Q Consensus 51 a~d~~g~~~~~~~~~g~I~~vd~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~vd~~~g~l~v~~~~~~~~~~~~l~~~d 130 (332)
++++++.+|++...++.|..+|..+++. .. ++. .+..+.+++++++..+||+++.+ +.|.+||
T Consensus 144 ~~~p~~~~~vs~~~d~~V~v~D~~t~~~----~~--~i~-----~g~~~~~v~~spdg~~l~v~~~d------~~V~v~D 206 (543)
T 1nir_A 144 DLDLPNLFSVTLRDAGQIALVDGDSKKI----VK--VID-----TGYAVHISRMSASGRYLLVIGRD------ARIDMID 206 (543)
T ss_dssp CCCGGGEEEEEEGGGTEEEEEETTTCCE----EE--EEE-----CSTTEEEEEECTTSCEEEEEETT------SEEEEEE
T ss_pred ccCCCCEEEEEEcCCCeEEEEECCCceE----EE--EEe-----cCcccceEEECCCCCEEEEECCC------CeEEEEE
Confidence 4888888787777789999999887762 22 221 12247899999985578888753 5799999
Q ss_pred C--CCCcEEEEEecCCCCCCCCCccceEECC----CCc-EEEEeCCCCeEEEEcCC-CceEEEecCCCCCCcc-cccCcc
Q 020019 131 L--STWNRLFLTQLSGPSDGKSCADDVTVDA----EGN-AYVTDVTGSKIWKVGVK-GEFLSIISSPLFTPKE-WYKNLV 201 (332)
Q Consensus 131 ~--~~g~~~~~~~l~~~~~~~~~~ndiavd~----dG~-lyvtd~~~~~I~~v~~~-g~~~~~~~~~~~~~p~-~~~~~~ 201 (332)
+ ++++....+.. ...|..++++| ||+ +|+++...+.|..+|.. ++....+......... ......
T Consensus 207 ~~~~t~~~~~~i~~------g~~p~~va~sp~~~~dg~~l~v~~~~~~~v~v~D~~t~~~~~~i~~~g~~~~~~~~~~~~ 280 (543)
T 1nir_A 207 LWAKEPTKVAEIKI------GIEARSVESSKFKGYEDRYTIAGAYWPPQFAIMDGETLEPKQIVSTRGMTVDTQTYHPEP 280 (543)
T ss_dssp TTSSSCEEEEEEEC------CSEEEEEEECCSTTCTTTEEEEEEEESSEEEEEETTTCCEEEEEECCEECSSSCCEESCC
T ss_pred CcCCCCcEEEEEec------CCCcceEEeCCCcCCCCCEEEEEEccCCeEEEEeccccccceeecccCcccCccccccCC
Confidence 9 77776654442 35688999999 986 89998888999999865 4544433221100000 000012
Q ss_pred ccCeEEEccCc-eEEEEeCCCCeEEEEeCCCCCCccceeEEEEecCCCCCCCCeEEEeCCCe-EEEEeCC--ceEEEEcC
Q 020019 202 GLNGIVYHPDG-FLIVIHTFSGNLFKIDIVDGVGEGEEIKLIRVAGGPLSFGDGLELLSPTK-LVVAGNP--SARLVESS 277 (332)
Q Consensus 202 ~~nGi~~~~dG-~Lyva~~~~~~i~~id~~~~~~~~~~~~~v~~~g~~~~~pdGi~~~~dG~-l~va~~~--~~~~v~~~ 277 (332)
.+.+|++++++ .+|++...+++|+.++..+.+. ..+..+... ..|.+++++++|+ +|++++. ...++...
T Consensus 281 ~v~~i~~s~~~~~~~vs~~~~g~i~vvd~~~~~~--l~~~~i~~~----~~~~~~~~spdg~~l~va~~~~~~v~v~D~~ 354 (543)
T 1nir_A 281 RVAAIIASHEHPEFIVNVKETGKVLLVNYKDIDN--LTVTSIGAA----PFLHDGGWDSSHRYFMTAANNSNKVAVIDSK 354 (543)
T ss_dssp CEEEEEECSSSSEEEEEETTTTEEEEEECTTSSS--CEEEEEECC----SSCCCEEECTTSCEEEEEEGGGTEEEEEETT
T ss_pred ceEEEEECCCCCEEEEEECCCCeEEEEEecCCCc--ceeEEeccC----cCccCceECCCCCEEEEEecCCCeEEEEECC
Confidence 46789999988 9999999999999999987531 122234321 4688999999998 6777643 34555666
Q ss_pred CCceEEEEEeeecCCCcccc-eEEEE---ECCeEEEEEecC
Q 020019 278 DGWETAAVVAKFSGPVHRLA-TAATV---KDGRVYLNHMLG 314 (332)
Q Consensus 278 dg~~~~~~~~~~~~~~~~~p-t~va~---~~g~lyv~~~~g 314 (332)
++ ++...+.......| .+..+ +++++|+++..+
T Consensus 355 tg----~l~~~i~~g~~ph~g~g~~~~~p~~g~~~~s~~~~ 391 (543)
T 1nir_A 355 DR----RLSALVDVGKTPHPGRGANFVHPKYGPVWSTSHLG 391 (543)
T ss_dssp TT----EEEEEEECSSSBCCTTCEEEEETTTEEEEEEEBSS
T ss_pred CC----eEEEeeccCCCCCCCCCcccCCCCCccEEEeccCC
Confidence 67 33333332111111 12222 348888876643
|
| >2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H* | Back alignment and structure |
|---|
Probab=99.40 E-value=5.7e-10 Score=104.37 Aligned_cols=232 Identities=10% Similarity=-0.016 Sum_probs=126.2
Q ss_pred CCccccceEEcCCCCEEEEE-e---------cCCeEEEEECCCCCCCccceeeeEEecc--cCc-CCCccceEEEeCCCC
Q 020019 43 SSFFRECAKWDDSGRRFIVS-F---------LDGGIGQVAVPDDYPPGTVLEEVTLVKD--LEL-TGNGSLGLVLDHPRN 109 (332)
Q Consensus 43 ~~~~pegia~d~~g~~~~~~-~---------~~g~I~~vd~~~~~~~~~~~~~~~~~~~--~~~-~~~~~~gi~vd~~~g 109 (332)
.+..| ++++++||+.+|+. . .++.|.++|+.+.+. .. ++.-. +.. .+..|.+++++|+..
T Consensus 65 ~g~~p-~i~~spDg~~lyv~n~~~~~~~rg~~~~~v~viD~~t~~~----~~--~i~~~~~~~~~~g~~p~~~~~spDG~ 137 (373)
T 2mad_H 65 GGFLP-NPVAAHSGSEFALASTSFSRIAKGKRTDYVEVFDPVTFLP----IA--DIELPDAPRFDVGPYSWMNANTPNNA 137 (373)
T ss_pred CCCCC-CeEECCCCCEEEEEeccccccccCCCCCeEEEEECCCCcE----EE--EEECCCccccccCCCccceEECCCCC
Confidence 45678 99999999866655 2 246799999876552 22 12111 110 124688999999866
Q ss_pred eEEEEEeCcCCCccceEEEEECCCCcEEEE-EecCCCCCCCCCccc----eEECCCCc----------------------
Q 020019 110 RLLVVAADVFGNKYSAVAAYDLSTWNRLFL-TQLSGPSDGKSCADD----VTVDAEGN---------------------- 162 (332)
Q Consensus 110 ~l~v~~~~~~~~~~~~l~~~d~~~g~~~~~-~~l~~~~~~~~~~nd----iavd~dG~---------------------- 162 (332)
+||+++.. ..+.|.++| +++++... +.+++. ....+.+ ++..++|.
T Consensus 138 ~l~v~n~~----~~~~v~viD-~t~~~~~~~i~~~~~--~~~~~~~~~~~~~~~~dg~~~~vd~~g~~~~~~~~~~~~~~ 210 (373)
T 2mad_H 138 DLLFFQFA----AGPAVGLVV-QGGSSDDQLLSSPTC--YHIHPGAPSTFYLLCAQGGLAKTDHAGGAAGAGLVGAMLTA 210 (373)
T ss_pred EEEEEecC----CCCeEEEEE-CCCCEEeEEcCCCce--EEEEeCCCceEEEEcCCCCEEEEECCCcEEEEEeccccccC
Confidence 78988742 135689999 99988766 544210 0000100 11222222
Q ss_pred ----------------EEEEeCCCCeEEEEcCCCceEEEecCCCCCCcccccCccccCe---EEEccCc-eEEEEeC---
Q 020019 163 ----------------AYVTDVTGSKIWKVGVKGEFLSIISSPLFTPKEWYKNLVGLNG---IVYHPDG-FLIVIHT--- 219 (332)
Q Consensus 163 ----------------lyvtd~~~~~I~~v~~~g~~~~~~~~~~~~~p~~~~~~~~~nG---i~~~~dG-~Lyva~~--- 219 (332)
+|+.. ..+.|+.+|..+....+...-.............|.| +++++|| +|||+..
T Consensus 211 ~~p~~~~~~~~~~~~~~~~~~-~~~~v~vid~~~~~~~v~~~~~~~~~~~~~~~~~p~g~~~~~~s~d~~~lyV~~~~~~ 289 (373)
T 2mad_H 211 AQNLLTQPAQANKSGRIVWPV-YSGKILQADISAAGATNKAPIDALSGGRKADTWRPGGWQQVAYLKSSDGIYLLTSEQS 289 (373)
T ss_pred CcceeecceeEecCCEEEEEc-CCceEEEEeccCCcceEeeeeeecCCcccccceecCceEeEEECCCCCEEEEEeccCC
Confidence 22221 2234444444321111100000000000011123555 8999999 9999865
Q ss_pred ------CCCeEEEEeCCCCCCccceeEEEEecCCCCCCCCeEEEeCCCe--EEEEeCC--ceEEEEcCCCceEEEEEeee
Q 020019 220 ------FSGNLFKIDIVDGVGEGEEIKLIRVAGGPLSFGDGLELLSPTK--LVVAGNP--SARLVESSDGWETAAVVAKF 289 (332)
Q Consensus 220 ------~~~~i~~id~~~~~~~~~~~~~v~~~g~~~~~pdGi~~~~dG~--l~va~~~--~~~~v~~~dg~~~~~~~~~~ 289 (332)
.++.|+.||+.+. +.+..+.++ ..|.+|++++||+ +|+++.. ...++...++ ++++.+
T Consensus 290 ~~~~~~~~~~V~VID~~t~----~vv~~i~~g----~~p~~i~~s~Dg~~~l~v~~~~~~~V~ViD~~t~----~vv~~i 357 (373)
T 2mad_H 290 AWKLHAAAKEVTSVTGLVG----QTSSQISLG----HDVDAISVAQDGGPDLYALSAGTEVLHIYDAGAG----DQDQST 357 (373)
T ss_pred cccccCCCCeEEEEECCCC----EEEEEEECC----CCcCeEEECCCCCeEEEEEcCCCCeEEEEECCCC----CEEeee
Confidence 2468999999987 356767654 3699999999987 5555522 2333455555 444442
Q ss_pred cCCCcccceEEEE
Q 020019 290 SGPVHRLATAATV 302 (332)
Q Consensus 290 ~~~~~~~pt~va~ 302 (332)
. +....|..+..
T Consensus 358 ~-~vG~~P~~~~~ 369 (373)
T 2mad_H 358 V-ELGSGPQVLSV 369 (373)
T ss_pred c-CCCCCCcEEEE
Confidence 1 11245666654
|
| >1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3 | Back alignment and structure |
|---|
Probab=99.38 E-value=7.9e-10 Score=102.39 Aligned_cols=209 Identities=18% Similarity=0.258 Sum_probs=141.8
Q ss_pred CEEEEEecCCeEEEEECCCCCCCccceeeeEEecccCcCCCccceEEEeCCCCeEEEEEeCcCCCccceEEEEECCCCcE
Q 020019 57 RRFIVSFLDGGIGQVAVPDDYPPGTVLEEVTLVKDLELTGNGSLGLVLDHPRNRLLVVAADVFGNKYSAVAAYDLSTWNR 136 (332)
Q Consensus 57 ~~~~~~~~~g~I~~vd~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~vd~~~g~l~v~~~~~~~~~~~~l~~~d~~~g~~ 136 (332)
.+|++...++.|..++..+++. . ..+.. +..+.+++++++...+|++... .+.|.+||+++++.
T Consensus 3 ~l~vs~~~d~~v~v~d~~~~~~----~---~~~~~----~~~~~~~~~s~dg~~l~~~~~~-----d~~i~v~d~~~~~~ 66 (391)
T 1l0q_A 3 FAYIANSESDNISVIDVTSNKV----T---ATIPV----GSNPMGAVISPDGTKVYVANAH-----SNDVSIIDTATNNV 66 (391)
T ss_dssp EEEEEETTTTEEEEEETTTTEE----E---EEEEC----SSSEEEEEECTTSSEEEEEEGG-----GTEEEEEETTTTEE
T ss_pred EEEEEcCCCCEEEEEECCCCeE----E---EEeec----CCCcceEEECCCCCEEEEECCC-----CCeEEEEECCCCeE
Confidence 3555667789999999887652 1 12211 1257899999974456677642 45799999999888
Q ss_pred EEEEecCCCCCCCCCccceEECCCCc-EEEEeCCCCeEEEEcCC-CceEEEecCCCCCCcccccCccccCeEEEccCc-e
Q 020019 137 LFLTQLSGPSDGKSCADDVTVDAEGN-AYVTDVTGSKIWKVGVK-GEFLSIISSPLFTPKEWYKNLVGLNGIVYHPDG-F 213 (332)
Q Consensus 137 ~~~~~l~~~~~~~~~~ndiavd~dG~-lyvtd~~~~~I~~v~~~-g~~~~~~~~~~~~~p~~~~~~~~~nGi~~~~dG-~ 213 (332)
...+.. ...+++++++|+|+ +|++....+.|+.+|.. ++....+.. ...+.++++++|| .
T Consensus 67 ~~~~~~------~~~v~~~~~spdg~~l~~~~~~~~~v~v~d~~~~~~~~~~~~-----------~~~~~~~~~s~dg~~ 129 (391)
T 1l0q_A 67 IATVPA------GSSPQGVAVSPDGKQVYVTNMASSTLSVIDTTSNTVAGTVKT-----------GKSPLGLALSPDGKK 129 (391)
T ss_dssp EEEEEC------SSSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEEC-----------SSSEEEEEECTTSSE
T ss_pred EEEEEC------CCCccceEECCCCCEEEEEECCCCEEEEEECCCCeEEEEEeC-----------CCCcceEEECCCCCE
Confidence 766554 13788999999986 88998888999999987 444333321 1246799999999 8
Q ss_pred EEEEeCCCCeEEEEeCCCCCCccceeEEEEecCCCCCCCCeEEEeCCCe-EEEEeCC--ceEEEEcCCCceEEEEEeeec
Q 020019 214 LIVIHTFSGNLFKIDIVDGVGEGEEIKLIRVAGGPLSFGDGLELLSPTK-LVVAGNP--SARLVESSDGWETAAVVAKFS 290 (332)
Q Consensus 214 Lyva~~~~~~i~~id~~~~~~~~~~~~~v~~~g~~~~~pdGi~~~~dG~-l~va~~~--~~~~v~~~dg~~~~~~~~~~~ 290 (332)
||++....++|+.+++.++ +.+..+... ..|.++++.++|+ ||++... ...+.....+ + ....+.
T Consensus 130 l~~~~~~~~~v~~~d~~~~----~~~~~~~~~----~~~~~~~~~~dg~~l~~~~~~~~~v~~~d~~~~-~---~~~~~~ 197 (391)
T 1l0q_A 130 LYVTNNGDKTVSVINTVTK----AVINTVSVG----RSPKGIAVTPDGTKVYVANFDSMSISVIDTVTN-S---VIDTVK 197 (391)
T ss_dssp EEEEETTTTEEEEEETTTT----EEEEEEECC----SSEEEEEECTTSSEEEEEETTTTEEEEEETTTT-E---EEEEEE
T ss_pred EEEEeCCCCEEEEEECCCC----cEEEEEecC----CCcceEEECCCCCEEEEEeCCCCEEEEEECCCC-e---EEEEEe
Confidence 9999999999999999876 234444332 4578999999975 6677533 3444455555 2 222222
Q ss_pred CCCcccceEEEE--ECCeEEEEEe
Q 020019 291 GPVHRLATAATV--KDGRVYLNHM 312 (332)
Q Consensus 291 ~~~~~~pt~va~--~~g~lyv~~~ 312 (332)
. ...+.++++ .+..||+++.
T Consensus 198 ~--~~~~~~~~~~~~g~~l~~~~~ 219 (391)
T 1l0q_A 198 V--EAAPSGIAVNPEGTKAYVTNV 219 (391)
T ss_dssp C--SSEEEEEEECTTSSEEEEEEE
T ss_pred c--CCCccceEECCCCCEEEEEec
Confidence 2 235677888 3456777653
|
| >3a9g_A Putative uncharacterized protein; PQQ dependent dehydrogenase, aldose sugar dehydrogenase, BET propeller fold, oxidoreductase; HET: TRE; 2.39A {Pyrobaculum aerophilum} PDB: 3a9h_A* | Back alignment and structure |
|---|
Probab=99.38 E-value=6.6e-11 Score=110.02 Aligned_cols=209 Identities=8% Similarity=-0.007 Sum_probs=129.8
Q ss_pred cccceEEcCC----CCEEEEEec---C----CeEEEEECCCCCCCccceeeeEEec-ccCcCCCccceEEEeCCCCeEEE
Q 020019 46 FRECAKWDDS----GRRFIVSFL---D----GGIGQVAVPDDYPPGTVLEEVTLVK-DLELTGNGSLGLVLDHPRNRLLV 113 (332)
Q Consensus 46 ~pegia~d~~----g~~~~~~~~---~----g~I~~vd~~~~~~~~~~~~~~~~~~-~~~~~~~~~~gi~vd~~~g~l~v 113 (332)
.|.||+++++ +.+|++... . ++|++++.++.... +.+...++. .|......+.+|+++++ |+||+
T Consensus 74 g~~gia~~pdf~~~g~lyv~~~~~~~~~~~~~~v~r~~~~~~~~~--~~~~~~l~~~~~~~~~h~~~~l~~~pD-G~Lyv 150 (354)
T 3a9g_A 74 GLLGLALHPEFPKKSWVYLYASYFAEGGHIRNRVIRGRLDGSTFK--LKEVKTLIDGIPGAYIHNGGRIRFGPD-GMLYI 150 (354)
T ss_dssp SEEEEEECTTTTTSCEEEEEEEEECGGGCEEEEEEEEEECSSSCC--EEEEEEEEEEEECCSSCCCCCEEECTT-SCEEE
T ss_pred ceeeEEeCCCCCcCCEEEEEEeccCCCCCcceEEEEEEECCCCcC--cCccEEEEEcCCCCCCcCCceEEECCC-CcEEE
Confidence 6899999997 677766542 3 68999997754210 111112222 12211125789999997 99999
Q ss_pred EEeCcCC--------CccceEEEEECCCCcE--------EEEEecCCCCCCCCCccceEECC-CCcEEEEeCCCC---eE
Q 020019 114 VAADVFG--------NKYSAVAAYDLSTWNR--------LFLTQLSGPSDGKSCADDVTVDA-EGNAYVTDVTGS---KI 173 (332)
Q Consensus 114 ~~~~~~~--------~~~~~l~~~d~~~g~~--------~~~~~l~~~~~~~~~~ndiavd~-dG~lyvtd~~~~---~I 173 (332)
+..+... ...++|++++++. +. ...+. .+..+|+++++|+ +|+||++|...+ .|
T Consensus 151 t~G~~~~~~~~~d~~~~~G~I~ri~~dG-~~p~~npf~~~~i~a-----~G~rnp~Gla~d~~~g~l~v~d~g~~~~dei 224 (354)
T 3a9g_A 151 TTGDAADPRLAQDLSSLAGKILRVDEEG-RPPADNPFPNSPIWS-----YGHRNPQGIDWHRASGVMVATEHGPVGHDEV 224 (354)
T ss_dssp ECCCTTCGGGGTCTTCCSSEEEEECTTS-CCCTTSSSTTCCEEE-----ECCSCCCEEEECTTTCCEEEEECCSSSCCEE
T ss_pred EECCCCCCccccCCCCCCeEEEEEcCCC-CCCCCCCCCCCcEEE-----EccCCcceEEEeCCCCCEEEEecCCCCCcEE
Confidence 9764221 1235788998763 21 00111 1246799999999 699999998765 36
Q ss_pred EEEcCCCceE---EEe--cCCCCCCcccc--cCccccCeEEE-------ccCceEEEEeCCCCeEEEEeCCCCCCcccee
Q 020019 174 WKVGVKGEFL---SII--SSPLFTPKEWY--KNLVGLNGIVY-------HPDGFLIVIHTFSGNLFKIDIVDGVGEGEEI 239 (332)
Q Consensus 174 ~~v~~~g~~~---~~~--~~~~~~~p~~~--~~~~~~nGi~~-------~~dG~Lyva~~~~~~i~~id~~~~~~~~~~~ 239 (332)
.++.+.+-.- ... ..+.+..|... .....|.|+++ +.+|.||+++...++|++++++... +..
T Consensus 225 ~~i~~G~nyGwp~~~g~~~~~~~~~p~~~~~~~~~ap~G~~~y~g~~fp~~~G~l~v~~~~~~~v~~~~~~~~g---~~~ 301 (354)
T 3a9g_A 225 NIILKGGNYGWPLATGKAGRGEFVDPVIDTGSETWAPSGASFVHGDMFPGLRGWLLIACLRGSMLAAVNFGDNM---EVR 301 (354)
T ss_dssp EEECTTCBCCTTTCCSCCCCTTSCCCSEECTTCCCCEEEEEECCSSSCGGGTTEEEEEETTTTEEEEEEECGGG---CEE
T ss_pred EEecCCCcCCCCcccCCCCCCCCcCCEeecCCCCcCCcceEEECCCCCcccCCcEEEEEcCCCEEEEEEECCCC---ccc
Confidence 6665432110 000 00112222211 12456899999 4678999999999999999998431 121
Q ss_pred --EEEEecCCCCCCCCeEEEeCCCeEEEEeC
Q 020019 240 --KLIRVAGGPLSFGDGLELLSPTKLVVAGN 268 (332)
Q Consensus 240 --~~v~~~g~~~~~pdGi~~~~dG~l~va~~ 268 (332)
+.+ +.+ ....|.+|++++||.|||++.
T Consensus 302 ~~~~~-~~~-~~~rp~~v~~~pDG~lyv~~~ 330 (354)
T 3a9g_A 302 KISTF-FKN-VFGRLRDVVIDDDGGILISTS 330 (354)
T ss_dssp EEEEE-CTT-TSCCEEEEEECTTSCEEEEEC
T ss_pred ceeee-ccC-CCCCeeEEEECCCCcEEEEEe
Confidence 222 221 346799999999999999974
|
| >2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H* | Back alignment and structure |
|---|
Probab=99.38 E-value=6.9e-10 Score=103.80 Aligned_cols=246 Identities=14% Similarity=0.049 Sum_probs=135.8
Q ss_pred EEcCCCCEEEEE-e-cCC---eEEEEECCCCCCCccceeeeEEecccCcCCCccceEEEeCCCCeEEEEEeCcCC----C
Q 020019 51 KWDDSGRRFIVS-F-LDG---GIGQVAVPDDYPPGTVLEEVTLVKDLELTGNGSLGLVLDHPRNRLLVVAADVFG----N 121 (332)
Q Consensus 51 a~d~~g~~~~~~-~-~~g---~I~~vd~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~vd~~~g~l~v~~~~~~~----~ 121 (332)
...++++..|+. . ..+ .|+++|+.+++. .. .+ .. +..| +|+++++..+||+++..... .
T Consensus 27 ~~~~~~~~~yv~~~~~~~~~~~v~v~D~~t~~~----~~---~i-~~---g~~p-~i~~spDg~~lyv~n~~~~~~~rg~ 94 (373)
T 2mad_H 27 APGADGRRSYINLPAHHSAIIQQWVLDAGSGSI----LG---HV-NG---GFLP-NPVAAHSGSEFALASTSFSRIAKGK 94 (373)
T ss_pred cCCCCCCEEEEeCCcccCCccEEEEEECCCCeE----EE---Ee-cC---CCCC-CeEECCCCCEEEEEeccccccccCC
Confidence 334666655544 4 444 889999887652 11 22 12 2367 99999986689999742110 0
Q ss_pred ccceEEEEECCCCcEEEEEecCCCCC--CCCCccceEECCCCc-EEEEeCC-CCeEEEEcCC-CceEEE-ecCCCCC--C
Q 020019 122 KYSAVAAYDLSTWNRLFLTQLSGPSD--GKSCADDVTVDAEGN-AYVTDVT-GSKIWKVGVK-GEFLSI-ISSPLFT--P 193 (332)
Q Consensus 122 ~~~~l~~~d~~~g~~~~~~~l~~~~~--~~~~~ndiavd~dG~-lyvtd~~-~~~I~~v~~~-g~~~~~-~~~~~~~--~ 193 (332)
..+.+.+||.+++++...+.+.++.. ....|.+++++|||+ ||+++.. .+.|..+| + ++.... +..+... .
T Consensus 95 ~~~~v~viD~~t~~~~~~i~~~~~~~~~~g~~p~~~~~spDG~~l~v~n~~~~~~v~viD-~t~~~~~~~i~~~~~~~~~ 173 (373)
T 2mad_H 95 RTDYVEVFDPVTFLPIADIELPDAPRFDVGPYSWMNANTPNNADLLFFQFAAGPAVGLVV-QGGSSDDQLLSSPTCYHIH 173 (373)
T ss_pred CCCeEEEEECCCCcEEEEEECCCccccccCCCccceEECCCCCEEEEEecCCCCeEEEEE-CCCCEEeEEcCCCceEEEE
Confidence 13468899999988887777631111 125688999999985 9999875 68899999 6 454433 3221100 0
Q ss_pred ccc-------------------------c---cCcccc----CeEEEccCc-eEEEEeCCCCeEEEEeCCCCCCccceeE
Q 020019 194 KEW-------------------------Y---KNLVGL----NGIVYHPDG-FLIVIHTFSGNLFKIDIVDGVGEGEEIK 240 (332)
Q Consensus 194 p~~-------------------------~---~~~~~~----nGi~~~~dG-~Lyva~~~~~~i~~id~~~~~~~~~~~~ 240 (332)
|.. . +...+. ....+.+++ .+|+.. ..++++.+|..+... ..+.
T Consensus 174 ~~~~~~~~~~~~dg~~~~vd~~g~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~-~~~~v~vid~~~~~~--~v~~ 250 (373)
T 2mad_H 174 PGAPSTFYLLCAQGGLAKTDHAGGAAGAGLVGAMLTAAQNLLTQPAQANKSGRIVWPV-YSGKILQADISAAGA--TNKA 250 (373)
T ss_pred eCCCceEEEEcCCCCEEEEECCCcEEEEEeccccccCCcceeecceeEecCCEEEEEc-CCceEEEEeccCCcc--eEee
Confidence 000 0 000000 011223333 433333 345666676654311 1122
Q ss_pred EEEecC----CCCCCCCe---EEEeCC-CeEEEEeCC-----------ceEEEEcCCCceEEEEEeeecCCCcccceEEE
Q 020019 241 LIRVAG----GPLSFGDG---LELLSP-TKLVVAGNP-----------SARLVESSDGWETAAVVAKFSGPVHRLATAAT 301 (332)
Q Consensus 241 ~v~~~g----~~~~~pdG---i~~~~d-G~l~va~~~-----------~~~~v~~~dg~~~~~~~~~~~~~~~~~pt~va 301 (332)
.+.... .....|+| +++++| ++|||+..+ ...++....+ ++++.+..+ ..|.+++
T Consensus 251 ~~~~~~~~~~~~~~~p~g~~~~~~s~d~~~lyV~~~~~~~~~~~~~~~~V~VID~~t~----~vv~~i~~g--~~p~~i~ 324 (373)
T 2mad_H 251 PIDALSGGRKADTWRPGGWQQVAYLKSSDGIYLLTSEQSAWKLHAAAKEVTSVTGLVG----QTSSQISLG--HDVDAIS 324 (373)
T ss_pred eeeecCCcccccceecCceEeEEECCCCCEEEEEeccCCcccccCCCCeEEEEECCCC----EEEEEEECC--CCcCeEE
Confidence 222210 01124777 889988 669998531 2344444444 566665533 3589999
Q ss_pred E-EC-C-eEEEEEecCcccc
Q 020019 302 V-KD-G-RVYLNHMLGFGYP 318 (332)
Q Consensus 302 ~-~~-g-~lyv~~~~g~~~~ 318 (332)
+ .+ + .+|+++.....++
T Consensus 325 ~s~Dg~~~l~v~~~~~~~V~ 344 (373)
T 2mad_H 325 VAQDGGPDLYALSAGTEVLH 344 (373)
T ss_pred ECCCCCeEEEEEcCCCCeEE
Confidence 9 44 4 5777776666654
|
| >1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1 | Back alignment and structure |
|---|
Probab=99.38 E-value=4.3e-11 Score=111.74 Aligned_cols=228 Identities=10% Similarity=-0.035 Sum_probs=129.2
Q ss_pred CCccccceEEcCCCCEEEEE-e---------cCCeEEEEECCCCCCCccceeeeEEeccc---Cc-CCCccceEEEeCCC
Q 020019 43 SSFFRECAKWDDSGRRFIVS-F---------LDGGIGQVAVPDDYPPGTVLEEVTLVKDL---EL-TGNGSLGLVLDHPR 108 (332)
Q Consensus 43 ~~~~pegia~d~~g~~~~~~-~---------~~g~I~~vd~~~~~~~~~~~~~~~~~~~~---~~-~~~~~~gi~vd~~~ 108 (332)
.+..| ++++++||+.+|+. . .++.|.++|+.+.+ +.. ++. -+ .+ .+..|.+++++++.
T Consensus 64 vG~~P-~i~~spDg~~lyVan~~~~r~~~G~~~~~VsviD~~T~~----vv~--~I~-v~~~~~~~~g~~P~~ia~SpDG 135 (368)
T 1mda_H 64 GAFLS-LAVAGHSGSDFALASTSFARSAKGKRTDYVEVFDPVTFL----PIA--DIE-LPDAPRFSVGPRVHIIGNCASS 135 (368)
T ss_dssp ECTTC-EEEECTTSSCEEEEEEEETTTTSSSEEEEEEEECTTTCC----EEE--EEE-ETTSCSCCBSCCTTSEEECTTS
T ss_pred CCCCC-ceEECCCCCEEEEEcccccccccCCCCCEEEEEECCCCC----EEE--EEE-CCCccccccCCCcceEEEcCCC
Confidence 35678 99999999755544 2 25679999998876 222 222 12 11 12468999999986
Q ss_pred CeEEEEEeCcCCCccceEEE--EECCCCcEEEEEecCCCCCCCCCccc----e---------------------------
Q 020019 109 NRLLVVAADVFGNKYSAVAA--YDLSTWNRLFLTQLSGPSDGKSCADD----V--------------------------- 155 (332)
Q Consensus 109 g~l~v~~~~~~~~~~~~l~~--~d~~~g~~~~~~~l~~~~~~~~~~nd----i--------------------------- 155 (332)
.+|||++.. ..+.+.+ +|+++ ...+.+++. -...|.+ +
T Consensus 136 k~lyVan~~----~~~~v~V~~iD~~t---v~~i~v~~~--~~~~p~g~~~~~~~~~dg~~~~vd~~~~~~~~~~v~~~~ 206 (368)
T 1mda_H 136 ACLLFFLFG----SSAAAGLSVPGASD---DQLTKSASC--FHIHPGAAATHYLGSCPASLAASDLAAAPAAAGIVGAQC 206 (368)
T ss_dssp SCEEEEECS----SSCEEEEEETTTEE---EEEEECSSC--CCCEEEETTEEECCCCTTSCEEEECCSSCCCCEECCCCS
T ss_pred CEEEEEccC----CCCeEEEEEEchhh---ceEEECCCc--eEEccCCCeEEEEEcCCCCEEEEECccccccCCeEEEEe
Confidence 689999753 1234666 67755 222333110 0000100 1
Q ss_pred -----------EECCCCcEEEEeCCCCeEEEEcCCCceEEEecCCCCCCcccccCccccCe---EEEccCc-eEEEEeC-
Q 020019 156 -----------TVDAEGNAYVTDVTGSKIWKVGVKGEFLSIISSPLFTPKEWYKNLVGLNG---IVYHPDG-FLIVIHT- 219 (332)
Q Consensus 156 -----------avd~dG~lyvtd~~~~~I~~v~~~g~~~~~~~~~~~~~p~~~~~~~~~nG---i~~~~dG-~Lyva~~- 219 (332)
+...++.+|++.. +.|+.+|..+....+...-.+...........|.| +++++|| +|||+..
T Consensus 207 t~~i~vg~~P~~~~~~~~~~~vs~--~~V~viD~~~~~~~v~~~~~~~~~~~~~~~~~p~g~~~v~~s~dg~~lyV~~~~ 284 (368)
T 1mda_H 207 TGAQNCSSQAAQANYPGMLVWAVA--SSILQGDIPAAGATMKAAIDGNESGRKADNFRSAGFQMVAKLKNTDGIMILTVE 284 (368)
T ss_dssp CTTSCBCSCCEEETTTTEEEECBS--SCCEEEECCSSCCEEECCCCSSCTHHHHTTEEECSSSCEEEETTTTEEEEEEEE
T ss_pred eeeeeCCCCccccccCCEEEEEcC--CEEEEEECCCCcceEEEEEEeccccccccccccCcceeeEEcCCCCEEEEEecc
Confidence 1111223444433 56666665432111111100100000011223455 8999999 9999865
Q ss_pred --C-----CCeEEEEeCCCCCCccceeEEEEecCCCCCCCCeEEEeCCCe-EEEEeC-Cce--EEEEcCCCceEEEEEee
Q 020019 220 --F-----SGNLFKIDIVDGVGEGEEIKLIRVAGGPLSFGDGLELLSPTK-LVVAGN-PSA--RLVESSDGWETAAVVAK 288 (332)
Q Consensus 220 --~-----~~~i~~id~~~~~~~~~~~~~v~~~g~~~~~pdGi~~~~dG~-l~va~~-~~~--~~v~~~dg~~~~~~~~~ 288 (332)
. .+.+..||+.+.+ .+..+.++ ..|.||++++||+ +|++++ ... .++...++ ++++.
T Consensus 285 ~~~~~~~~~~~~~ViD~~t~~----vv~~i~vg----~~p~gi~~s~Dg~~l~va~~~~~~~VsVID~~t~----kvv~~ 352 (368)
T 1mda_H 285 HSRSCLAAAENTSSVTASVGQ----TSGPISNG----HDSDAIIAAQDGASDNYANSAGTEVLDIYDAASD----QDQSS 352 (368)
T ss_dssp CSSCTTSCEEEEEEEESSSCC----EEECCEEE----EEECEEEECCSSSCEEEEEETTTTEEEEEESSSC----EEEEE
T ss_pred ccCcccccCCCEEEEECCCCe----EEEEEECC----CCcceEEECCCCCEEEEEccCCCCeEEEEECCCC----cEEEE
Confidence 3 3456799999873 56666654 3699999999987 899986 332 33445444 66676
Q ss_pred ecCCCcccceEEEEE
Q 020019 289 FSGPVHRLATAATVK 303 (332)
Q Consensus 289 ~~~~~~~~pt~va~~ 303 (332)
+.. ...|.++++.
T Consensus 353 I~v--g~~P~~i~~~ 365 (368)
T 1mda_H 353 VEL--DKGPESLSVQ 365 (368)
T ss_dssp CCC--CSCCCEEECC
T ss_pred EEC--CCCCCEEEee
Confidence 653 4678888873
|
| >3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans} | Back alignment and structure |
|---|
Probab=99.37 E-value=5.7e-10 Score=104.83 Aligned_cols=225 Identities=15% Similarity=0.104 Sum_probs=149.9
Q ss_pred ccccceEEcCCCCEEEEEecCCeEEEEECCCCCCCccceeeeEEecccCcC--CCccceEEEeCCCCeEEEEEeCcCCCc
Q 020019 45 FFRECAKWDDSGRRFIVSFLDGGIGQVAVPDDYPPGTVLEEVTLVKDLELT--GNGSLGLVLDHPRNRLLVVAADVFGNK 122 (332)
Q Consensus 45 ~~pegia~d~~g~~~~~~~~~g~I~~vd~~~~~~~~~~~~~~~~~~~~~~~--~~~~~gi~vd~~~g~l~v~~~~~~~~~ 122 (332)
..|.+++++++++++++...++.|..++..+++. . ......... ...+.+++++++ +++|++...
T Consensus 123 ~~~~~~~~s~~~~~~~~~~~~~~i~~~d~~~g~~----~---~~~~~~~~~~~~~~v~~~~~~~~-~~~~~s~~~----- 189 (433)
T 3bws_A 123 FQPKSVRFIDNTRLAIPLLEDEGMDVLDINSGQT----V---RLSPPEKYKKKLGFVETISIPEH-NELWVSQMQ----- 189 (433)
T ss_dssp SCBCCCEESSSSEEEEEBTTSSSEEEEETTTCCE----E---EECCCHHHHTTCCEEEEEEEGGG-TEEEEEEGG-----
T ss_pred CCceEEEEeCCCeEEEEeCCCCeEEEEECCCCeE----e---eecCcccccccCCceeEEEEcCC-CEEEEEECC-----
Confidence 3567899999776666666678899999887752 1 121111111 124678999885 898888753
Q ss_pred cceEEEEECCCCcEEEEEecCCCCCCCCCccceEECCCCc-EEEEeCCCCeEEEEcCC-CceEEEecCCCCCCcccccCc
Q 020019 123 YSAVAAYDLSTWNRLFLTQLSGPSDGKSCADDVTVDAEGN-AYVTDVTGSKIWKVGVK-GEFLSIISSPLFTPKEWYKNL 200 (332)
Q Consensus 123 ~~~l~~~d~~~g~~~~~~~l~~~~~~~~~~ndiavd~dG~-lyvtd~~~~~I~~v~~~-g~~~~~~~~~~~~~p~~~~~~ 200 (332)
.+.+.+||.++++....... ....++.++++++|+ +|++.+..+.|+.+|.. ++....+.. .
T Consensus 190 d~~v~~~d~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~l~~~~~~~~~i~~~d~~~~~~~~~~~~-----------~ 253 (433)
T 3bws_A 190 ANAVHVFDLKTLAYKATVDL-----TGKWSKILLYDPIRDLVYCSNWISEDISVIDRKTKLEIRKTDK-----------I 253 (433)
T ss_dssp GTEEEEEETTTCCEEEEEEC-----SSSSEEEEEEETTTTEEEEEETTTTEEEEEETTTTEEEEECCC-----------C
T ss_pred CCEEEEEECCCceEEEEEcC-----CCCCeeEEEEcCCCCEEEEEecCCCcEEEEECCCCcEEEEecC-----------C
Confidence 46799999998887655442 135788999999986 77898888999999976 444332211 1
Q ss_pred cccCeEEEccCc-eEEEEeC-------CCCeEEEEeCCCCCCccceeEEEEecCCCCCCCCeEEEeCCC-eEEEEeCC--
Q 020019 201 VGLNGIVYHPDG-FLIVIHT-------FSGNLFKIDIVDGVGEGEEIKLIRVAGGPLSFGDGLELLSPT-KLVVAGNP-- 269 (332)
Q Consensus 201 ~~~nGi~~~~dG-~Lyva~~-------~~~~i~~id~~~~~~~~~~~~~v~~~g~~~~~pdGi~~~~dG-~l~va~~~-- 269 (332)
..+.+++++|+| .||++.. ..+.|+.+++.+++ .+..+... ..+.+++++++| .+|++...
T Consensus 254 ~~~~~~~~~~~g~~l~~~~~~~~~~~~~dg~i~~~d~~~~~----~~~~~~~~----~~~~~~~~~~~g~~l~~~~~~~~ 325 (433)
T 3bws_A 254 GLPRGLLLSKDGKELYIAQFSASNQESGGGRLGIYSMDKEK----LIDTIGPP----GNKRHIVSGNTENKIYVSDMCCS 325 (433)
T ss_dssp SEEEEEEECTTSSEEEEEEEESCTTCSCCEEEEEEETTTTE----EEEEEEEE----ECEEEEEECSSTTEEEEEETTTT
T ss_pred CCceEEEEcCCCCEEEEEECCCCccccCCCeEEEEECCCCc----EEeeccCC----CCcceEEECCCCCEEEEEecCCC
Confidence 247899999999 8888875 45688999998762 34434332 356789999998 58888533
Q ss_pred ceEEEEcCCCceEEEEEeeecCCCcccceEEEE-EC-CeEEEEEe
Q 020019 270 SARLVESSDGWETAAVVAKFSGPVHRLATAATV-KD-GRVYLNHM 312 (332)
Q Consensus 270 ~~~~v~~~dg~~~~~~~~~~~~~~~~~pt~va~-~~-g~lyv~~~ 312 (332)
...+....++ + +...+.. ...|.++++ .+ ..||++..
T Consensus 326 ~v~v~d~~~~-~---~~~~~~~--~~~~~~~~~s~dg~~l~~~~~ 364 (433)
T 3bws_A 326 KIEVYDLKEK-K---VQKSIPV--FDKPNTIALSPDGKYLYVSCR 364 (433)
T ss_dssp EEEEEETTTT-E---EEEEEEC--SSSEEEEEECTTSSEEEEEEC
T ss_pred EEEEEECCCC-c---EEEEecC--CCCCCeEEEcCCCCEEEEEec
Confidence 3344444555 3 3333321 244678888 44 45777554
|
| >3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ... | Back alignment and structure |
|---|
Probab=99.37 E-value=1.4e-10 Score=108.54 Aligned_cols=230 Identities=12% Similarity=0.069 Sum_probs=133.6
Q ss_pred CccccceEEcCCCCEEEE-Ee---------cCCeEEEEECCCCCCCccceeeeEEecccC---cCCCccceEEEeCCCCe
Q 020019 44 SFFRECAKWDDSGRRFIV-SF---------LDGGIGQVAVPDDYPPGTVLEEVTLVKDLE---LTGNGSLGLVLDHPRNR 110 (332)
Q Consensus 44 ~~~pegia~d~~g~~~~~-~~---------~~g~I~~vd~~~~~~~~~~~~~~~~~~~~~---~~~~~~~gi~vd~~~g~ 110 (332)
+..|+ +++++||+.+|+ +. .++.|.+||..+.+ +.. ++.-.++ ..+..|.+++++++..+
T Consensus 78 G~~P~-va~spDG~~lyVan~~~~r~~~G~~~~~VsviD~~t~~----v~~--~I~v~~g~r~~~g~~P~~~a~spDGk~ 150 (386)
T 3sjl_D 78 GFLPN-PVVADDGSFIAHASTVFSRIARGERTDYVEVFDPVTLL----PTA--DIELPDAPRFLVGTYPWMTSLTPDGKT 150 (386)
T ss_dssp CSSCE-EEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTCC----EEE--EEEETTCCCCCBSCCGGGEEECTTSSE
T ss_pred CCCCc-EEECCCCCEEEEEcccccccccCCCCCEEEEEECCCCe----EEE--EEECCCccccccCCCCceEEEcCCCCE
Confidence 56786 999999986554 42 24679999998776 223 2221110 11347999999998667
Q ss_pred EEEEEeCcCCCccceEEEEECCCCcEEEEEecCCCCCCCCCccc----eEECCCCcEEEEeCC-----------------
Q 020019 111 LLVVAADVFGNKYSAVAAYDLSTWNRLFLTQLSGPSDGKSCADD----VTVDAEGNAYVTDVT----------------- 169 (332)
Q Consensus 111 l~v~~~~~~~~~~~~l~~~d~~~g~~~~~~~l~~~~~~~~~~nd----iavd~dG~lyvtd~~----------------- 169 (332)
|||++.. ..+.|.++|.+++++...+.+++. ...+|.+ +++.+||.+++.+..
T Consensus 151 lyVan~~----~~~~VsVID~~t~~vv~tI~v~g~--~~~~P~g~~~~~~~~~DG~~~~v~~~~~g~v~~~~~~~~~~~~ 224 (386)
T 3sjl_D 151 LLFYQFS----PAPAVGVVDLEGKAFKRMLDVPDC--YHIFPTAPDTFFMHCRDGSLAKVAFGTEGTPEITHTEVFHPED 224 (386)
T ss_dssp EEEEECS----SSCEEEEEETTTTEEEEEEECCSE--EEEEEEETTEEEEEETTSCEEEEECCSSSCCEEEECCCCSCTT
T ss_pred EEEEEcC----CCCeEEEEECCCCcEEEEEECCCc--ceeecCCCceeEEECCCCCEEEEECCCCCeEEEeecceecccc
Confidence 9998742 135688899998888776665321 0112222 244444443222221
Q ss_pred ---------------------CCeEEEEcCCCceEEEecC-CCCCC----cccccCccccCeEEEccCc-eEEEEeC---
Q 020019 170 ---------------------GSKIWKVGVKGEFLSIISS-PLFTP----KEWYKNLVGLNGIVYHPDG-FLIVIHT--- 219 (332)
Q Consensus 170 ---------------------~~~I~~v~~~g~~~~~~~~-~~~~~----p~~~~~~~~~nGi~~~~dG-~Lyva~~--- 219 (332)
.+.|+.+|..+....+... ..+.. +.+. ..+...+++++++ +|||+..
T Consensus 225 ~~~~~~~~~~~~dG~~~~vs~~g~V~v~d~~~~~~~v~~~~~~~~~~~~~~g~~--p~g~q~~a~~~~~~~lyV~~~~~~ 302 (386)
T 3sjl_D 225 EFLINHPAYSQKAGRLVWPTYTGKIHQIDLSSGDAKFLPAVEALTEAERADGWR--PGGWQQVAYHRALDRIYLLVDQRD 302 (386)
T ss_dssp SCBCSCCEEETTTTEEEEEBTTSEEEEEECTTSSCEECCCEESSCHHHHHTTEE--ECSSSCEEEETTTTEEEEEEEECC
T ss_pred ccccccceeEcCCCcEEEEeCCCEEEEEECCCCcceeecceecccccccccccc--CCCcceeeECCCCCeEEEEecccc
Confidence 2344444433221111000 00100 0000 1123458889998 9999864
Q ss_pred ------CCCeEEEEeCCCCCCccceeEEEEecCCCCCCCCeEEEeCCCe--EEEEeCC--ceEEEEcCCCceEEEEEeee
Q 020019 220 ------FSGNLFKIDIVDGVGEGEEIKLIRVAGGPLSFGDGLELLSPTK--LVVAGNP--SARLVESSDGWETAAVVAKF 289 (332)
Q Consensus 220 ------~~~~i~~id~~~~~~~~~~~~~v~~~g~~~~~pdGi~~~~dG~--l~va~~~--~~~~v~~~dg~~~~~~~~~~ 289 (332)
..++|+.||+.+.+ .+..+.+. ..|.+|++++||+ ||+++.. ...++...++ ++++.+
T Consensus 303 ~~~hk~~~~~V~viD~~t~k----v~~~i~vg----~~~~~lavs~D~~~~ly~tn~~~~~VsViD~~t~----k~~~~i 370 (386)
T 3sjl_D 303 EWRHKTASRFVVVLDAKTGE----RLAKFEMG----HEIDSINVSQDEKPLLYALSTGDKTLYIHDAESG----EELRSV 370 (386)
T ss_dssp TTCTTSCEEEEEEEETTTCC----EEEEEEEE----EEECEEEECSSSSCEEEEEETTTTEEEEEETTTC----CEEEEE
T ss_pred ccccCCCCCEEEEEECCCCe----EEEEEECC----CCcceEEECCCCCeEEEEEcCCCCeEEEEECCCC----cEEEEe
Confidence 24689999999883 67777765 3688999999985 7777743 2344455666 566655
Q ss_pred cCCCcccceEEEE
Q 020019 290 SGPVHRLATAATV 302 (332)
Q Consensus 290 ~~~~~~~pt~va~ 302 (332)
.. ...|..+++
T Consensus 371 ~~--~~~p~~l~~ 381 (386)
T 3sjl_D 371 NQ--LGHGPQVIT 381 (386)
T ss_dssp CC--CCSSCCEEE
T ss_pred cC--CCCCceeEE
Confidence 43 334666665
|
| >1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B* | Back alignment and structure |
|---|
Probab=99.36 E-value=5.2e-10 Score=101.48 Aligned_cols=160 Identities=16% Similarity=0.162 Sum_probs=105.9
Q ss_pred cceEEcCCCCEEEEEecCCeEEEEECCCCCCCccceeeeEEecccCcCCCccceEEEeCCCCeEEEEEeCcCCCccceEE
Q 020019 48 ECAKWDDSGRRFIVSFLDGGIGQVAVPDDYPPGTVLEEVTLVKDLELTGNGSLGLVLDHPRNRLLVVAADVFGNKYSAVA 127 (332)
Q Consensus 48 egia~d~~g~~~~~~~~~g~I~~vd~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~vd~~~g~l~v~~~~~~~~~~~~l~ 127 (332)
-|+++.+++++|++...+++|+++|..+++. .. .+..+.. ..+.+++++++...+|++... .+.|.
T Consensus 3 ~g~~~~~~~~~~v~~~~~~~v~~~d~~~~~~----~~---~~~~~~~--~~~~~~~~s~dg~~~~v~~~~-----~~~i~ 68 (349)
T 1jmx_B 3 TGPALKAGHEYMIVTNYPNNLHVVDVASDTV----YK---SCVMPDK--FGPGTAMMAPDNRTAYVLNNH-----YGDIY 68 (349)
T ss_dssp -CCCCCTTCEEEEEEETTTEEEEEETTTTEE----EE---EEECSSC--CSSCEEEECTTSSEEEEEETT-----TTEEE
T ss_pred ccccccCCCEEEEEeCCCCeEEEEECCCCcE----EE---EEecCCC--CCCceeEECCCCCEEEEEeCC-----CCcEE
Confidence 4678888888888887789999999887652 11 2211111 157899999973457887642 45799
Q ss_pred EEECCCCcEEEEEecCCCC-CCCCCccceEECCCCc-EEEEeCC-----------CCeEEEEcCCC-ceEEEecCCCCCC
Q 020019 128 AYDLSTWNRLFLTQLSGPS-DGKSCADDVTVDAEGN-AYVTDVT-----------GSKIWKVGVKG-EFLSIISSPLFTP 193 (332)
Q Consensus 128 ~~d~~~g~~~~~~~l~~~~-~~~~~~ndiavd~dG~-lyvtd~~-----------~~~I~~v~~~g-~~~~~~~~~~~~~ 193 (332)
+||+++++....+.+.... .....+++++++|||+ +|++... .+.|+.+|... +...... .+.
T Consensus 69 ~~d~~t~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~--~~~- 145 (349)
T 1jmx_B 69 GIDLDTCKNTFHANLSSVPGEVGRSMYSFAISPDGKEVYATVNPTQRLNDHYVVKPPRLEVFSTADGLEAKPVR--TFP- 145 (349)
T ss_dssp EEETTTTEEEEEEESCCSTTEEEECSSCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEEGGGGGGBCCSE--EEE-
T ss_pred EEeCCCCcEEEEEEcccccccccccccceEECCCCCEEEEEcccccccccccccCCCeEEEEECCCccccceee--ecc-
Confidence 9999998877666652100 0023488999999996 7887743 57898888653 2211100 010
Q ss_pred cccccCccccCeEEEccCceEEEEeCCCCeEEEEeCCCC
Q 020019 194 KEWYKNLVGLNGIVYHPDGFLIVIHTFSGNLFKIDIVDG 232 (332)
Q Consensus 194 p~~~~~~~~~nGi~~~~dG~Lyva~~~~~~i~~id~~~~ 232 (332)
....+.++++++||.||++ ++.|+.+++.++
T Consensus 146 -----~~~~~~~~~~s~dg~l~~~---~~~i~~~d~~~~ 176 (349)
T 1jmx_B 146 -----MPRQVYLMRAADDGSLYVA---GPDIYKMDVKTG 176 (349)
T ss_dssp -----CCSSCCCEEECTTSCEEEE---SSSEEEECTTTC
T ss_pred -----CCCcccceeECCCCcEEEc---cCcEEEEeCCCC
Confidence 1124678999999998885 345999998866
|
| >1cru_A Protein (soluble quinoprotein glucose dehydrogena; beta-propeller, superbarrel; HET: PQQ; 1.50A {Acinetobacter calcoaceticus} SCOP: b.68.2.1 PDB: 1c9u_A* 1cq1_A* 1qbi_A | Back alignment and structure |
|---|
Probab=99.36 E-value=4.6e-11 Score=114.70 Aligned_cols=168 Identities=14% Similarity=0.189 Sum_probs=110.0
Q ss_pred CCc-cccceEEcCCCCEEEEEecCCeEEEEECCCCCCCccceeeeEEecccCc-----CCCccceEEEeCC---CCeEEE
Q 020019 43 SSF-FRECAKWDDSGRRFIVSFLDGGIGQVAVPDDYPPGTVLEEVTLVKDLEL-----TGNGSLGLVLDHP---RNRLLV 113 (332)
Q Consensus 43 ~~~-~pegia~d~~g~~~~~~~~~g~I~~vd~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~gi~vd~~---~g~l~v 113 (332)
.++ .|.+++++++|++|++....++|++++..+++. + .+..-++. ...+++||+++|+ ++.||+
T Consensus 24 ~~l~~P~~~a~~pdG~l~V~e~~gg~I~~~~~~~g~~-----~--~~~~~~~~~~~~~g~~Gllgia~~Pdf~~~g~lYv 96 (454)
T 1cru_A 24 SNLNKPHALLWGPDNQIWLTERATGKILRVNPESGSV-----K--TVFQVPEIVNDADGQNGLLGFAFHPDFKNNPYIYI 96 (454)
T ss_dssp CCCSSEEEEEECTTSCEEEEETTTCEEEEECTTTCCE-----E--EEEECTTCCCCTTSSCSEEEEEECTTTTTSCEEEE
T ss_pred CCCCCceEEEEcCCCcEEEEEcCCCEEEEEECCCCcE-----e--EEecCCccccccCCCCceeEEEECCCcCcCCEEEE
Confidence 344 999999999999999887667899998765542 2 22211211 1247889999995 699999
Q ss_pred EEeCcC----C---CccceEEEEECCCC--cE---EEEE-ecCCCCCCCCCccceEECCCCcEEEEeC------------
Q 020019 114 VAADVF----G---NKYSAVAAYDLSTW--NR---LFLT-QLSGPSDGKSCADDVTVDAEGNAYVTDV------------ 168 (332)
Q Consensus 114 ~~~~~~----~---~~~~~l~~~d~~~g--~~---~~~~-~l~~~~~~~~~~ndiavd~dG~lyvtd~------------ 168 (332)
+..... . ....+|.+|+.+.+ ++ ...+ .++ ....+++++|++++||+|||+..
T Consensus 97 ~~s~~~~~~~~~~~~~~~~v~r~~~~~~~~~~~~~~~i~~~~p--~~~~H~~~~l~f~pDG~Lyv~~Gd~~~~~~~~~~~ 174 (454)
T 1cru_A 97 SGTFKNPKSTDKELPNQTIIRRYTYNKSTDTLEKPVDLLAGLP--SSKDHQSGRLVIGPDQKIYYTIGDQGRNQLAYLFL 174 (454)
T ss_dssp EEEEECTTC--CCSCEEEEEEEEEEETTTTEEEEEEEEEEEEC--CCSSCCEEEEEECTTSCEEEEECCTTTTSGGGTTS
T ss_pred EEeccccCCCccccccccEEEEEEECCCCCCcCCcEEEEEcCC--CCCCCCCCeEeECCCCeEEEEECCCCCCCcccccc
Confidence 985310 0 01357888876432 22 1122 242 22357899999999999999832
Q ss_pred --------------------CCCeEEEEcCCCceEEEecCCCCC----CcccccCccccCeEEEccCceEEEEeCCCC
Q 020019 169 --------------------TGSKIWKVGVKGEFLSIISSPLFT----PKEWYKNLVGLNGIVYHPDGFLIVIHTFSG 222 (332)
Q Consensus 169 --------------------~~~~I~~v~~~g~~~~~~~~~~~~----~p~~~~~~~~~nGi~~~~dG~Lyva~~~~~ 222 (332)
..++|+|++++|+.. ..++ |. ...+..++.+|.|++|+++|+||+++...+
T Consensus 175 ~~~~~~~p~~~~~~aq~~~~~~G~IlRi~~dG~ip--~~Np-f~~~~~~ei~a~G~RNp~gla~dp~G~L~~~d~g~~ 249 (454)
T 1cru_A 175 PNQAQHTPTQQELNGKDYHTYMGKVLRLNLDGSIP--KDNP-SFNGVVSHIYTLGHRNPQGLAFTPNGKLLQSEQGPN 249 (454)
T ss_dssp CCCTTCCCCHHHHHTTCCTTCSSEEEEECTTSCCC--TTCC-EETTEECSEEEBCCSEEEEEEECTTSCEEEEEECSS
T ss_pred ccccccccccccccccCCCCCCeeEEEEeCCCCCC--CCCC-CCCCCcceEEEECCCCcceEEECCCCCEEEEecCCC
Confidence 147899999998731 0010 10 011123456799999999999999998643
|
| >1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A* | Back alignment and structure |
|---|
Probab=99.35 E-value=1.5e-09 Score=106.97 Aligned_cols=238 Identities=13% Similarity=0.103 Sum_probs=152.3
Q ss_pred CCccccceEEcCCCCEEEEEecCCeEEEEECC--CCCCCccceeeeEEecccCcCCCccceEEEe----CCCCeEEEEEe
Q 020019 43 SSFFRECAKWDDSGRRFIVSFLDGGIGQVAVP--DDYPPGTVLEEVTLVKDLELTGNGSLGLVLD----HPRNRLLVVAA 116 (332)
Q Consensus 43 ~~~~pegia~d~~g~~~~~~~~~g~I~~vd~~--~~~~~~~~~~~~~~~~~~~~~~~~~~gi~vd----~~~g~l~v~~~ 116 (332)
.+..|+++++++||+.+|+...++.|.++|.. +.+ +.. ++. .+..|.+|+++ ++...+|+++.
T Consensus 195 ~g~~p~~v~~SpDGr~lyv~~~dg~V~viD~~~~t~~----~v~--~i~-----~G~~P~~ia~s~~~~pDGk~l~v~n~ 263 (567)
T 1qks_A 195 TGYAVHISRLSASGRYLFVIGRDGKVNMIDLWMKEPT----TVA--EIK-----IGSEARSIETSKMEGWEDKYAIAGAY 263 (567)
T ss_dssp CSSCEEEEEECTTSCEEEEEETTSEEEEEETTSSSCC----EEE--EEE-----CCSEEEEEEECCSTTCTTTEEEEEEE
T ss_pred CCCCccceEECCCCCEEEEEcCCCeEEEEECCCCCCc----EeE--EEe-----cCCCCceeEEccccCCCCCEEEEEEc
Confidence 35578999999999977766567899999985 333 111 221 23478999999 56457888876
Q ss_pred CcCCCccceEEEEECCCCcEEEEEecCCC-CCC-----CCCccceEECCCC-cEEEEeCCCCeEEEEcCCC-ceEEEecC
Q 020019 117 DVFGNKYSAVAAYDLSTWNRLFLTQLSGP-SDG-----KSCADDVTVDAEG-NAYVTDVTGSKIWKVGVKG-EFLSIISS 188 (332)
Q Consensus 117 ~~~~~~~~~l~~~d~~~g~~~~~~~l~~~-~~~-----~~~~ndiavd~dG-~lyvtd~~~~~I~~v~~~g-~~~~~~~~ 188 (332)
. .+.+.+||..+.++...+.+.+. .++ ..+...+...+++ .+|++....|.|+.+|... +......-
T Consensus 264 ~-----~~~v~ViD~~t~~~~~~i~~~~~~~~~~~~~p~~rva~i~~s~~~~~~vv~~~~~g~v~~vd~~~~~~~~v~~i 338 (567)
T 1qks_A 264 W-----PPQYVIMDGETLEPKKIQSTRGMTYDEQEYHPEPRVAAILASHYRPEFIVNVKETGKILLVDYTDLNNLKTTEI 338 (567)
T ss_dssp E-----TTEEEEEETTTCCEEEEEECCEECTTTCCEESCCCEEEEEECSSSSEEEEEETTTTEEEEEETTCSSEEEEEEE
T ss_pred c-----CCeEEEEECCCCcEEEEEeccccccccccccCCCceEEEEEcCCCCEEEEEecCCCeEEEEecCCCccceeeee
Confidence 3 35688999999998877765321 111 1245577887776 4677777889999999653 22211110
Q ss_pred CCCCCcccccCccccCeEEEccCc-eEEEEeCCCCeEEEEeCCCCCCccceeEEEEecCCCCCCC-CeEEE-eCC-CeEE
Q 020019 189 PLFTPKEWYKNLVGLNGIVYHPDG-FLIVIHTFSGNLFKIDIVDGVGEGEEIKLIRVAGGPLSFG-DGLEL-LSP-TKLV 264 (332)
Q Consensus 189 ~~~~~p~~~~~~~~~nGi~~~~dG-~Lyva~~~~~~i~~id~~~~~~~~~~~~~v~~~g~~~~~p-dGi~~-~~d-G~l~ 264 (332)
+ ....+.++.|++|| ++|+++..+++|..||+.+++ .+..+.+.+ ..+.| .|+.+ +++ |.+|
T Consensus 339 ~---------~~~~~~d~~~~pdgr~~~va~~~sn~V~ViD~~t~k----l~~~i~vgg-~~Phpg~g~~~~~p~~g~v~ 404 (567)
T 1qks_A 339 S---------AERFLHDGGLDGSHRYFITAANARNKLVVIDTKEGK----LVAIEDTGG-QTPHPGRGANFVHPTFGPVW 404 (567)
T ss_dssp E---------CCSSEEEEEECTTSCEEEEEEGGGTEEEEEETTTTE----EEEEEECSS-SSBCCTTCEEEEETTTEEEE
T ss_pred e---------ccccccCceECCCCCEEEEEeCCCCeEEEEECCCCc----EEEEEeccC-cCCCCccceeeECCCCCcEE
Confidence 0 11246689999999 999999999999999999873 455566511 22334 36654 776 8899
Q ss_pred EEeC-C-ceEEEEcCCC-------ceEEEEEeeecCCCcccceEEEE--ECCeEEEEEecC
Q 020019 265 VAGN-P-SARLVESSDG-------WETAAVVAKFSGPVHRLATAATV--KDGRVYLNHMLG 314 (332)
Q Consensus 265 va~~-~-~~~~v~~~dg-------~~~~~~~~~~~~~~~~~pt~va~--~~g~lyv~~~~g 314 (332)
++.+ . ....++..+. |+. +..+.... ..+-.+.. ++.+|||+++++
T Consensus 405 ~t~~~g~~~Vsvid~~~~~~~~~~~kv---v~~i~~~g-~g~~~i~~~p~~~~l~v~~~~~ 461 (567)
T 1qks_A 405 ATSHMGDDSVALIGTDPEGHPDNAWKI---LDSFPALG-GGSLFIKTHPNSQYLYVDATLN 461 (567)
T ss_dssp EEEBSSSSEEEEEECCTTTCTTTBTSE---EEEEECSC-SCCCCEECCTTCSEEEEECTTC
T ss_pred EeCCCCCCeEEEecCCCCCCccccCEE---EEEEecCC-CCCEEEEeCCCCCeEEEecCCC
Confidence 8863 2 2233333332 543 33333221 12233444 457899988754
|
| >1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1 | Back alignment and structure |
|---|
Probab=99.32 E-value=4.6e-10 Score=103.97 Aligned_cols=248 Identities=13% Similarity=0.041 Sum_probs=139.9
Q ss_pred cccceEEcCCCCEEEEEecCCeEEEEECC-CCCCCccceeeeEEecccCcCCCccceEEEeCCCCe-EEEEEeCcC----
Q 020019 46 FRECAKWDDSGRRFIVSFLDGGIGQVAVP-DDYPPGTVLEEVTLVKDLELTGNGSLGLVLDHPRNR-LLVVAADVF---- 119 (332)
Q Consensus 46 ~pegia~d~~g~~~~~~~~~g~I~~vd~~-~~~~~~~~~~~~~~~~~~~~~~~~~~gi~vd~~~g~-l~v~~~~~~---- 119 (332)
.|..++++++|+.+|+.... .|..++.+ +++. . .....+. . ..|.+++++++ |+ ||+...+.+
T Consensus 41 ~~~~~a~spdg~~l~~~~~~-~v~~~~~~~~g~~-----~--~~~~~~~-~-g~~~~~~~spd-g~~l~~~~~~~~~~~~ 109 (365)
T 1jof_A 41 PISWMTFDHERKNIYGAAMK-KWSSFAVKSPTEI-----V--HEASHPI-G-GHPRANDADTN-TRAIFLLAAKQPPYAV 109 (365)
T ss_dssp CCSEEEECTTSSEEEEEEBT-EEEEEEEEETTEE-----E--EEEEEEC-C-SSGGGGCTTSC-CEEEEEEECSSTTCCE
T ss_pred CCcEEEECCCCCEEEEEccc-eEEEEEECCCCCE-----E--EeeEeec-C-CCCccEEECCC-CCEEEEEEecCCccee
Confidence 78899999999966655333 78777764 4541 1 1211111 1 14677899997 76 344322100
Q ss_pred -CC----ccceEEEEECC-CCcEEEEEecCCCCCCCCCccceEECCCCc-EEEEeCCCCeEEEEcCC--CceEEEecCCC
Q 020019 120 -GN----KYSAVAAYDLS-TWNRLFLTQLSGPSDGKSCADDVTVDAEGN-AYVTDVTGSKIWKVGVK--GEFLSIISSPL 190 (332)
Q Consensus 120 -~~----~~~~l~~~d~~-~g~~~~~~~l~~~~~~~~~~ndiavd~dG~-lyvtd~~~~~I~~v~~~--g~~~~~~~~~~ 190 (332)
.+ ..+.+.+|+.+ .|+........ +.+....+++++++|||+ +|+++...+.|+.++.+ |+....... .
T Consensus 110 ~~~~~~~~~g~v~v~~~~~~g~~~~~~~~~-~~~~~~~~~~~~~spdG~~l~~~~~~~~~v~~~~~~~~g~~~~~~~~-~ 187 (365)
T 1jof_A 110 YANPFYKFAGYGNVFSVSETGKLEKNVQNY-EYQENTGIHGMVFDPTETYLYSADLTANKLWTHRKLASGEVELVGSV-D 187 (365)
T ss_dssp EEEEESSSCCEEEEEEECTTCCEEEEEEEE-ECCTTCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSCEEEEEEE-E
T ss_pred ccceeecCCceEEEEccCCCCcCcceEeeE-EeCCCCcceEEEECCCCCEEEEEcCCCCEEEEEEECCCCCEEEeeeE-e
Confidence 00 12456778876 46654333321 011246789999999996 89999888899888864 654322110 0
Q ss_pred CCCcccccCccccCeEEEccCc-eEEEEeCCCCeEEEEeC--CCCCCccceeEEEE-ecCCCC---C-------CCCeEE
Q 020019 191 FTPKEWYKNLVGLNGIVYHPDG-FLIVIHTFSGNLFKIDI--VDGVGEGEEIKLIR-VAGGPL---S-------FGDGLE 256 (332)
Q Consensus 191 ~~~p~~~~~~~~~nGi~~~~dG-~Lyva~~~~~~i~~id~--~~~~~~~~~~~~v~-~~g~~~---~-------~pdGi~ 256 (332)
+.. ...+|.+++|+||| .||+++..+++|..++. .+++... ..+.+. .+ ... . .|.+++
T Consensus 188 ~~~-----~g~~p~~~~~spdg~~l~v~~~~~~~v~v~~~~~~~g~~~~-~~~~~~~~~-~~~~g~~~~~~~~~~~~~i~ 260 (365)
T 1jof_A 188 APD-----PGDHPRWVAMHPTGNYLYALMEAGNRICEYVIDPATHMPVY-THHSFPLIP-PGIPDRDPETGKGLYRADVC 260 (365)
T ss_dssp CSS-----TTCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEE-EEEEEESSC-TTCCCBCTTTSSBSEEEEEE
T ss_pred cCC-----CCCCCCEeEECCCCCEEEEEECCCCeEEEEEEeCCCCcEEE-ccceEEcCC-CCcCCcccccccccccccEE
Confidence 000 12468899999999 99999988887766544 3452100 012233 22 111 1 478999
Q ss_pred -EeCCCe-EEEEeC--C-----ceEEEEc-CCCceEEEEEeeecCCCcccceEEEE-E----CCeEEEEEecCc
Q 020019 257 -LLSPTK-LVVAGN--P-----SARLVES-SDGWETAAVVAKFSGPVHRLATAATV-K----DGRVYLNHMLGF 315 (332)
Q Consensus 257 -~~~dG~-l~va~~--~-----~~~~v~~-~dg~~~~~~~~~~~~~~~~~pt~va~-~----~g~lyv~~~~g~ 315 (332)
+++||+ ||+++. . ...+... .+| +...+...+... ...|..+++ . ++.||+++..+.
T Consensus 261 ~~spdG~~l~v~~~~~~~~~~~~i~v~~~~~~g-~~~~~~~~~~~~-~~~~~~~a~sp~~~dg~~l~v~~~~~~ 332 (365)
T 1jof_A 261 ALTFSGKYMFASSRANKFELQGYIAGFKLRDCG-SIEKQLFLSPTP-TSGGHSNAVSPCPWSDEWMAITDDQEG 332 (365)
T ss_dssp EECTTSSEEEEEEEESSTTSCCEEEEEEECTTS-CEEEEEEEEECS-SCCTTCCCEEECTTCTTEEEEECSSSC
T ss_pred EECCCCCEEEEECCCCCCCCCCeEEEEEECCCC-CEEEeeeeeecC-CCCcccceecCCCcCCCEEEEEEcCCC
Confidence 999986 777762 2 3333333 356 333322222211 234566666 4 567777665433
|
| >1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A | Back alignment and structure |
|---|
Probab=99.30 E-value=2e-10 Score=112.15 Aligned_cols=255 Identities=13% Similarity=0.096 Sum_probs=151.6
Q ss_pred CCCEEEEE-ecCCeEEEEECCCCCCCccceeeeEEecccCcCCCccceEEE-e-CCCCeEEEEEeCcC------C-----
Q 020019 55 SGRRFIVS-FLDGGIGQVAVPDDYPPGTVLEEVTLVKDLELTGNGSLGLVL-D-HPRNRLLVVAADVF------G----- 120 (332)
Q Consensus 55 ~g~~~~~~-~~~g~I~~vd~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~v-d-~~~g~l~v~~~~~~------~----- 120 (332)
||+.+|++ ..+++|.+||.++.+. . ..+.-|. +.+|.|+++ . |+.+.+|++..... .
T Consensus 100 DG~~lfVnd~~~~rVavIdl~t~~~----~---~ii~ip~--g~~phg~~~~~~p~~~~v~~~~~~~~p~~~dg~~l~~~ 170 (595)
T 1fwx_A 100 DGRFLFMNDKANTRVARVRCDVMKC----D---AILEIPN--AKGIHGLRPQKWPRSNYVFCNGEDETPLVNDGTNMEDV 170 (595)
T ss_dssp EEEEEEEEETTTTEEEEEETTTTEE----E---EEEECSS--CCSEEEEEECCSSBCSEEEEEECSCEESSCSSSSTTCG
T ss_pred CCCEEEEEcCCCCEEEEEECCCceE----e---eEEeCCC--CCCCcceeeeecCCCcEEEEecccccccCCCCcccccc
Confidence 67766655 6688999999987652 1 2232232 237899998 4 77678888753210 0
Q ss_pred -CccceEEEEECCCCcEEEEEecCCCCCCCCCccceEECCCCc-EEEEeCCC--------------CeEEEEcC------
Q 020019 121 -NKYSAVAAYDLSTWNRLFLTQLSGPSDGKSCADDVTVDAEGN-AYVTDVTG--------------SKIWKVGV------ 178 (332)
Q Consensus 121 -~~~~~l~~~d~~~g~~~~~~~l~~~~~~~~~~ndiavd~dG~-lyvtd~~~--------------~~I~~v~~------ 178 (332)
.-.+.+.++|.++.++.+.+.+. ..|.+++++++|+ +|+|+... ..|..++.
T Consensus 171 ~~~~~~vtvID~~t~~v~~qI~Vg------g~pd~~~~spdGk~~~vt~~~se~~~~i~~~~~~~~d~v~V~~~~~~~~~ 244 (595)
T 1fwx_A 171 ANYVNVFTAVDADKWEVAWQVLVS------GNLDNCDADYEGKWAFSTSYNSEKGMTLPEMTAAEMDHIVVFNIAEIEKA 244 (595)
T ss_dssp GGEEEEEEEEETTTTEEEEEEEES------SCCCCEEECSSSSEEEEEESCTTCCSSHHHHTCCSEEEEEEEEHHHHHHH
T ss_pred cccCceEEEEECCCCeEEEEEEeC------CCccceEECCCCCEEEEEecCcccCcchhhccccccceEEEeeccceeEe
Confidence 11346788999998888777662 2688999999985 88887654 23444331
Q ss_pred --CCceEE-----EecCCC--CCC-cccccCccccCeEEEccCc-eEEEEeCCCCeEEEEeCCCC------CCcc--cee
Q 020019 179 --KGEFLS-----IISSPL--FTP-KEWYKNLVGLNGIVYHPDG-FLIVIHTFSGNLFKIDIVDG------VGEG--EEI 239 (332)
Q Consensus 179 --~g~~~~-----~~~~~~--~~~-p~~~~~~~~~nGi~~~~dG-~Lyva~~~~~~i~~id~~~~------~~~~--~~~ 239 (332)
+|+... +++... ... ...++....|.|+.++||| ++|+++..+++|..||.++. ++.. ..+
T Consensus 245 v~~Gk~~~i~~V~VID~~~~~~~~~~~~Ipvg~~PhGv~~sPDGk~v~V~~~~s~~VsVid~~~~~~~~~~~l~~~~~v~ 324 (595)
T 1fwx_A 245 IAAGDYQELNGVKVVDGRKEASSLFTRYIPIANNPHGCNMAPDKKHLCVAGKLSPTVTVLDVTRFDAVFYENADPRSAVV 324 (595)
T ss_dssp HHHTCSEEETTEEEEECSGGGCCSSEEEEEEESSCCCEEECTTSSEEEEECTTSSBEEEEEGGGHHHHHHSCCCGGGGEE
T ss_pred ccCCCeeEECcEEEEeCcccCCceeEEEEecCCCceEEEEcCCCCEEEEeCCCCCeEEEEECcccccccccccCcccceE
Confidence 233211 111111 000 1112334579999999999 99999999999999998843 1110 112
Q ss_pred EEEEecCCCCCCCCeEEEeCCCeEEEEeCCce--EEEEcCC------CceEEEEEeeecCCCcccc------eEEEE--E
Q 020019 240 KLIRVAGGPLSFGDGLELLSPTKLVVAGNPSA--RLVESSD------GWETAAVVAKFSGPVHRLA------TAATV--K 303 (332)
Q Consensus 240 ~~v~~~g~~~~~pdGi~~~~dG~l~va~~~~~--~~v~~~d------g~~~~~~~~~~~~~~~~~p------t~va~--~ 303 (332)
..+.+ ..+|-+++++++|++|++..-.+ .+..... |.+...++..+.. .-.| -+.++ +
T Consensus 325 ~~v~v----G~gP~h~aF~~dG~aY~t~~ldsqV~kwdi~~a~~~~~g~~~~~vi~kidV--~yqpGh~~~~~g~t~~~D 398 (595)
T 1fwx_A 325 AEPEL----GLGPLHTAFDGRGNAYTSLFLDSQVVKWNIEDAIRAYAGEKVDPIKDKLDV--HYQPGHLKTVMGETLDAT 398 (595)
T ss_dssp ECCBC----CSCEEEEEECTTSEEEEEETTTTEEEEEEHHHHHHHHHTCSCCCEEEEEEC--SSCEEEEEETTTTSTTCC
T ss_pred EEcCC----CCCcceEEECCCCeEEEEEecCCcEEEEEhhHhhhhhcccccceeEEEeec--ccccccceeccceEeCCC
Confidence 22221 25799999999999999974332 2222222 1111234444432 1233 12233 5
Q ss_pred CCeEEEEEecCcc--cc-CCccceeeeeec
Q 020019 304 DGRVYLNHMLGFG--YP-KKKHALVEAVFS 330 (332)
Q Consensus 304 ~g~lyv~~~~g~~--~~-~~~~~~~~~~~~ 330 (332)
+++||+.|++..+ ++ -.-+|..+.+|+
T Consensus 399 Gk~l~~~Nk~skdr~~~~gp~~~~~~ql~d 428 (595)
T 1fwx_A 399 NDWLVCLSKFSKDRFLNVGPLKPENDQLID 428 (595)
T ss_dssp SSEEEEEESCCTTSSCCCCSSCCEEEEEEE
T ss_pred CCEEEEcCCCCccccccCCCCCCCcceEEE
Confidence 7899999998743 22 233355556554
|
| >2p9w_A MAL S 1 allergenic protein; beta propeller; 1.35A {Malassezia sympodialis} | Back alignment and structure |
|---|
Probab=99.30 E-value=2.6e-10 Score=103.84 Aligned_cols=203 Identities=12% Similarity=0.090 Sum_probs=124.5
Q ss_pred ccceEEEeCCCCeEEEEEeCcCCCccceEEEEECCCCcEEEEEecCCC---CCCCCCccceEE---CCCCcEEE-EeC--
Q 020019 98 GSLGLVLDHPRNRLLVVAADVFGNKYSAVAAYDLSTWNRLFLTQLSGP---SDGKSCADDVTV---DAEGNAYV-TDV-- 168 (332)
Q Consensus 98 ~~~gi~vd~~~g~l~v~~~~~~~~~~~~l~~~d~~~g~~~~~~~l~~~---~~~~~~~ndiav---d~dG~lyv-td~-- 168 (332)
-|.+++.|+.++++|+++.. .+.|.+||+..+..+.. .+++. +.+...+.|+.+ |++|+||+ ++.
T Consensus 14 yPE~~~wd~~~g~~~vs~l~-----~g~V~~~~~~~~~~~~~-~~~~~s~~g~~~~~~sGl~~~~~D~~grL~vv~~~~~ 87 (334)
T 2p9w_A 14 TPEDTIYDRTRQVFYQSNLY-----KGRIEVYNPKTQSHFNV-VIDGASSNGDGEQQMSGLSLLTHDNSKRLFAVMKNAK 87 (334)
T ss_dssp CCSCEEEETTTTEEEEEETT-----TTEEEEECTTTCCEEEE-CCTTTCCSSCCSEEEEEEEESSSSSCCEEEEEEEETT
T ss_pred CCcCccCcCCCCEEEEEecc-----CCEEEEEcCCCCeEEEE-ecCCccccCCCcceeeEEEEeccCCCCcEEEEEcccc
Confidence 57899999988999999864 46799999986665443 44321 222346789999 79999998 552
Q ss_pred ----------CCCeEEEEcCC----CceEEEecCCCCC-C--cccccCccccCeEEEccCceEEEEeCCC-CeEEEEeCC
Q 020019 169 ----------TGSKIWKVGVK----GEFLSIISSPLFT-P--KEWYKNLVGLNGIVYHPDGFLIVIHTFS-GNLFKIDIV 230 (332)
Q Consensus 169 ----------~~~~I~~v~~~----g~~~~~~~~~~~~-~--p~~~~~~~~~nGi~~~~dG~Lyva~~~~-~~i~~id~~ 230 (332)
+...|.++|.+ |+.....+..... . +.......++|+|++|++|+.||+++.. +.|+||+++
T Consensus 88 af~~~g~~~~g~~~v~~~Dl~~~~tg~~~~~~dL~~~~~~~~~~~g~~~~~~nDvavD~~GnaYVt~s~~~~~I~rV~pd 167 (334)
T 2p9w_A 88 SFNFADQSSHGASSFHSFNLPLSENSKPVWSVNFEKVQDEFEKKAGKRPFGVVQSAQDRDGNSYVAFALGMPAIARVSAD 167 (334)
T ss_dssp TTCTTSCCSSSCCEEEEEESSCCTTCCCSEEEESHHHHHHHHHHHSSCCEEEEEEEECTTSCEEEEEEESSCEEEEECTT
T ss_pred cccccccccCCCCEEEEEcCCcCCCCCEEEEecCccccccccccccccccCCceeEECCCCCEEEeCCCCCCeEEEEeCC
Confidence 35789999987 6654433211000 0 0000012468999999999999999999 999999999
Q ss_pred CCCCccceeEEEEec---CCCCCCCCeEEEeCCCeE-EEEeCCc-eEEEEcCCCceEEEEEee--ecCCCcccceEE-EE
Q 020019 231 DGVGEGEEIKLIRVA---GGPLSFGDGLELLSPTKL-VVAGNPS-ARLVESSDGWETAAVVAK--FSGPVHRLATAA-TV 302 (332)
Q Consensus 231 ~~~~~~~~~~~v~~~---g~~~~~pdGi~~~~dG~l-~va~~~~-~~~v~~~dg~~~~~~~~~--~~~~~~~~pt~v-a~ 302 (332)
.. .+..+... .....++.||++.|+|++ ++++... ...+..... ...++... .....+..|+.+ +.
T Consensus 168 G~-----~~~~~~~~~~~~~~~~G~nGIv~~pdg~~Liv~~~~g~L~~fD~~~p-v~~~v~~~~~G~~~~~~~~dgilp~ 241 (334)
T 2p9w_A 168 GK-----TVSTFAWESGNGGQRPGYSGITFDPHSNKLIAFGGPRALTAFDVSKP-YAWPEPVKINGDFGTLSGTEKIVTV 241 (334)
T ss_dssp SC-----CEEEEEECCCCSSSCCSCSEEEEETTTTEEEEESSSSSEEEEECSSS-SCCCEECEESSCCCCCTTEEEEEEE
T ss_pred CC-----EEeeeeecCCCcccccCcceEEEeCCCCEEEEEcCCCeEEEEcCCCC-cceeecccccCCcccccCccccccc
Confidence 54 23222221 112346899999999864 4444432 222222211 10011111 001236678885 55
Q ss_pred -ECCeE-EEEEe
Q 020019 303 -KDGRV-YLNHM 312 (332)
Q Consensus 303 -~~g~l-yv~~~ 312 (332)
.+|++ +|++.
T Consensus 242 ~~~G~vllV~~~ 253 (334)
T 2p9w_A 242 PVGNESVLVGAR 253 (334)
T ss_dssp EETTEEEEEEEE
T ss_pred ccCCEEEEEEcC
Confidence 57777 77654
|
| >3sre_A PON1, serum paraoxonase; directed evolution, 6-blades-propeller fold, hydrolase; HET: LMT; 1.99A {Artificial gene} PDB: 1v04_A* 3srg_A* | Back alignment and structure |
|---|
Probab=99.29 E-value=3.6e-10 Score=104.74 Aligned_cols=193 Identities=13% Similarity=0.110 Sum_probs=124.1
Q ss_pred ccceEEEeCCCCeEEEEEeC-cC------CCccceEEEEECCC--CcEEEEEecCC--CCCCCCCccceEECC--CC--c
Q 020019 98 GSLGLVLDHPRNRLLVVAAD-VF------GNKYSAVAAYDLST--WNRLFLTQLSG--PSDGKSCADDVTVDA--EG--N 162 (332)
Q Consensus 98 ~~~gi~vd~~~g~l~v~~~~-~~------~~~~~~l~~~d~~~--g~~~~~~~l~~--~~~~~~~~ndiavd~--dG--~ 162 (332)
+|..|+++++ |.+|++... .+ +...++|++||+++ ++.. ...+.+ +......|+||.+.+ +| +
T Consensus 51 G~EDi~~~~~-G~~~~s~~~~~pg~~~~~~~~~G~I~~~d~~~~~~~~~-~l~~~g~~~~~~~f~PhGi~~~~d~dg~~~ 128 (355)
T 3sre_A 51 GSEDLEILPN-GLAFISSGLKYPGIMSFDPDKSGKILLMDLNEKEPAVS-ELEIIGNTLDISSFNPHGISTFIDDDNTVY 128 (355)
T ss_dssp CCCEEEECTT-SEEEEEECCC-----------CCEEEEEETTSSSCCEE-ECEEECSSCCGGGCCEEEEEEEECTTCCEE
T ss_pred CcceeEEcCC-CeEEEEeccccCCCcccCCCCCCeEEEEecCCCCCceE-EEEccCCCCCcCceeeeeeEEEECCCCcEE
Confidence 6778999985 999999731 10 01356899999973 3433 233332 111236899999965 45 5
Q ss_pred EEEEeCCCC----eEEEEcCCCceEEEecCCCCCCcccccCccccCeEEEccCceEEEEeC-----------------CC
Q 020019 163 AYVTDVTGS----KIWKVGVKGEFLSIISSPLFTPKEWYKNLVGLNGIVYHPDGFLIVIHT-----------------FS 221 (332)
Q Consensus 163 lyvtd~~~~----~I~~v~~~g~~~~~~~~~~~~~p~~~~~~~~~nGi~~~~dG~Lyva~~-----------------~~ 221 (332)
|||.+...+ .|++++++++...++..-.. ..+..||.++++++|.+|+++. ..
T Consensus 129 L~Vvnh~~~~s~ielf~~d~~~~~~~~~~~~~g------~~~~~pND~~v~~~G~fyvt~~~~ftd~~~~~~e~~~~~~~ 202 (355)
T 3sre_A 129 LLVVNHPGSSSTVEVFKFQEEEKSLLHLKTIRH------KLLPSVNDIVAVGPEHFYATNDHYFIDPYLKSWEMHLGLAW 202 (355)
T ss_dssp EEEEECSTTCCEEEEEEEETTTTEEEEEEEECC------TTCSSEEEEEEEETTEEEEEESCSCSSHHHHHHHHHTTCCC
T ss_pred EEEEECCCCCCeEEEEEEECCCCEEEEEecccc------CCCCCCceEEEeCCCCEEecCCcEeCCcccccchhhccCCc
Confidence 899987632 48889988776555432111 1346799999999999999976 35
Q ss_pred CeEEEEeCCCCCCccceeEEEEecCCCCCCCCeEEEeCCC-eEEEEeCC--ceEEEE-cCCCceEEEEEeeecCCCcccc
Q 020019 222 GNLFKIDIVDGVGEGEEIKLIRVAGGPLSFGDGLELLSPT-KLVVAGNP--SARLVE-SSDGWETAAVVAKFSGPVHRLA 297 (332)
Q Consensus 222 ~~i~~id~~~~~~~~~~~~~v~~~g~~~~~pdGi~~~~dG-~l~va~~~--~~~~v~-~~dg~~~~~~~~~~~~~~~~~p 297 (332)
++|||+++. .++.+. . .+..|.||++++|| .|||++.. .++... .++| +... .+.+.. ...|
T Consensus 203 g~vyr~d~~-------~~~~~~-~--~l~~pNGia~spDg~~lYvadt~~~~I~~~~~~~~g-~l~~-~~~~~~--~g~P 268 (355)
T 3sre_A 203 SFVTYYSPN-------DVRVVA-E--GFDFANGINISPDGKYVYIAELLAHKIHVYEKHANW-TLTP-LRVLSF--DTLV 268 (355)
T ss_dssp EEEEEECTT-------CCEEEE-E--EESSEEEEEECTTSSEEEEEEGGGTEEEEEEECTTS-CEEE-EEEEEC--SSEE
T ss_pred cEEEEEECC-------eEEEee-c--CCcccCcceECCCCCEEEEEeCCCCeEEEEEECCCC-cEec-CEEEeC--CCCC
Confidence 789999874 122232 2 45789999999997 69999843 333333 2455 3322 222322 2569
Q ss_pred eEEEE-E-CCeEEEEEe
Q 020019 298 TAATV-K-DGRVYLNHM 312 (332)
Q Consensus 298 t~va~-~-~g~lyv~~~ 312 (332)
.++++ . +|+|||+..
T Consensus 269 DGi~vD~e~G~lwva~~ 285 (355)
T 3sre_A 269 DNISVDPVTGDLWVGCH 285 (355)
T ss_dssp EEEEECTTTCCEEEEEE
T ss_pred ceEEEeCCCCcEEEEec
Confidence 99999 5 499999553
|
| >1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B* | Back alignment and structure |
|---|
Probab=99.29 E-value=1.1e-09 Score=99.42 Aligned_cols=209 Identities=11% Similarity=0.062 Sum_probs=127.1
Q ss_pred cccceEEcCCCCEE-EEEecCCeEEEEECCCCCCCccceeeeEEecccCcC---CCccceEEEeCCCCeEEEEEeCc--C
Q 020019 46 FRECAKWDDSGRRF-IVSFLDGGIGQVAVPDDYPPGTVLEEVTLVKDLELT---GNGSLGLVLDHPRNRLLVVAADV--F 119 (332)
Q Consensus 46 ~pegia~d~~g~~~-~~~~~~g~I~~vd~~~~~~~~~~~~~~~~~~~~~~~---~~~~~gi~vd~~~g~l~v~~~~~--~ 119 (332)
.|.+++++++|+.+ ++...++.|++++..+++. .. .+..+... +..+.+++++++...||++..+. .
T Consensus 44 ~~~~~~~s~dg~~~~v~~~~~~~i~~~d~~t~~~----~~---~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~ 116 (349)
T 1jmx_B 44 GPGTAMMAPDNRTAYVLNNHYGDIYGIDLDTCKN----TF---HANLSSVPGEVGRSMYSFAISPDGKEVYATVNPTQRL 116 (349)
T ss_dssp SSCEEEECTTSSEEEEEETTTTEEEEEETTTTEE----EE---EEESCCSTTEEEECSSCEEECTTSSEEEEEEEEEEEC
T ss_pred CCceeEECCCCCEEEEEeCCCCcEEEEeCCCCcE----EE---EEEcccccccccccccceEECCCCCEEEEEccccccc
Confidence 68899999999855 4556678999999887652 11 22111110 22478999999744677776320 0
Q ss_pred C----CccceEEEEECCCCcEEEEE-ecCCCCCCCCCccceEECCCCcEEEEeCCCCeEEEEcCC-CceEEEecCCCCCC
Q 020019 120 G----NKYSAVAAYDLSTWNRLFLT-QLSGPSDGKSCADDVTVDAEGNAYVTDVTGSKIWKVGVK-GEFLSIISSPLFTP 193 (332)
Q Consensus 120 ~----~~~~~l~~~d~~~g~~~~~~-~l~~~~~~~~~~ndiavd~dG~lyvtd~~~~~I~~v~~~-g~~~~~~~~~~~~~ 193 (332)
. ...+.|.+||+++++..... .+.. ...+.+++++++|++|+++ +.|+.+|.. ++....+.......
T Consensus 117 ~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~----~~~~~~~~~s~dg~l~~~~---~~i~~~d~~~~~~~~~~~~~~~~~ 189 (349)
T 1jmx_B 117 NDHYVVKPPRLEVFSTADGLEAKPVRTFPM----PRQVYLMRAADDGSLYVAG---PDIYKMDVKTGKYTVALPLRNWNR 189 (349)
T ss_dssp SSCEEECCCEEEEEEGGGGGGBCCSEEEEC----CSSCCCEEECTTSCEEEES---SSEEEECTTTCCEEEEECSTTCCC
T ss_pred ccccccCCCeEEEEECCCccccceeeeccC----CCcccceeECCCCcEEEcc---CcEEEEeCCCCceeccccccccCC
Confidence 0 01257899999875532211 1111 1357789999999988863 349999975 55443332111000
Q ss_pred ccc-------------------c---------------------------------------cCccccCeEEEcc-Cc-e
Q 020019 194 KEW-------------------Y---------------------------------------KNLVGLNGIVYHP-DG-F 213 (332)
Q Consensus 194 p~~-------------------~---------------------------------------~~~~~~nGi~~~~-dG-~ 213 (332)
+.. . +....+.+++++| || .
T Consensus 190 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~dg~~ 269 (349)
T 1jmx_B 190 KGYSAPDVLYFWPHQSPRHEFSMLYTIARFKDDKQDPATADLLYGYLSVDLKTGKTHTQEFADLTELYFTGLRSPKDPNQ 269 (349)
T ss_dssp TTBCCCBCCCCCCCCCTTCEEEEEEEEEEC-------CCCEEEEEEEEEETTTCCEEEEEEEECSSCEEEEEECSSCTTE
T ss_pred ccccCccceeeecCCCcceeEEeeeeeeecCCCcCCccccccceeEEEEeccCCcEEecccccCCCcceeeEecCCCCCE
Confidence 000 0 0011456788889 99 8
Q ss_pred EEEEeCCCCeEEEEeCCCCCCccceeEEEEecCCCCCCCCeEEEeCCCe-EEEEeCC-ceEEEEcCCC
Q 020019 214 LIVIHTFSGNLFKIDIVDGVGEGEEIKLIRVAGGPLSFGDGLELLSPTK-LVVAGNP-SARLVESSDG 279 (332)
Q Consensus 214 Lyva~~~~~~i~~id~~~~~~~~~~~~~v~~~g~~~~~pdGi~~~~dG~-l~va~~~-~~~~v~~~dg 279 (332)
||++ .++|+.+|+.++ +.+..+... ..|.+++++++|+ ||++... ...+.....+
T Consensus 270 l~~~---~~~v~~~d~~~~----~~~~~~~~~----~~~~~~~~s~dg~~l~~~~~~~~v~v~d~~~~ 326 (349)
T 1jmx_B 270 IYGV---LNRLAKYDLKQR----KLIKAANLD----HTYYCVAFDKKGDKLYLGGTFNDLAVFNPDTL 326 (349)
T ss_dssp EEEE---ESEEEEEETTTT----EEEEEEECS----SCCCEEEECSSSSCEEEESBSSEEEEEETTTT
T ss_pred EEEE---cCeEEEEECccC----eEEEEEcCC----CCccceEECCCCCEEEEecCCCeEEEEecccc
Confidence 9988 679999999877 244545433 3578999999965 7776433 3344455555
|
| >2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii} | Back alignment and structure |
|---|
Probab=99.28 E-value=7e-10 Score=105.02 Aligned_cols=209 Identities=17% Similarity=0.102 Sum_probs=135.3
Q ss_pred cccceEEcCCCCEEEEEecC------CeEEEEECCCCCCCccceeeeEEecccCcCCCccceEEEeCCCCeEEEEEeCcC
Q 020019 46 FRECAKWDDSGRRFIVSFLD------GGIGQVAVPDDYPPGTVLEEVTLVKDLELTGNGSLGLVLDHPRNRLLVVAADVF 119 (332)
Q Consensus 46 ~pegia~d~~g~~~~~~~~~------g~I~~vd~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~vd~~~g~l~v~~~~~~ 119 (332)
.|+++...++| +|++.+.+ |.|..+|..+.+ +.. +|.. +.....-+..+.+.++.+.+|+++.+.+
T Consensus 139 ~Ph~~~~~pdG-i~Vs~~g~~~g~~~g~v~vlD~~T~~----v~~--~~~~-~~~~~~~~Yd~~~~p~~~~mvsS~wg~p 210 (462)
T 2ece_A 139 RLHTVHCGPDA-IYISALGNEEGEGPGGILMLDHYSFE----PLG--KWEI-DRGDQYLAYDFWWNLPNEVLVSSEWAVP 210 (462)
T ss_dssp EEEEEEECSSC-EEEEEEEETTSCSCCEEEEECTTTCC----EEE--ECCS-BCTTCCCCCCEEEETTTTEEEECBCCCH
T ss_pred cccceeECCCe-EEEEcCCCcCCCCCCeEEEEECCCCe----EEE--EEcc-CCCCccccceEEECCCCCEEEEccCcCc
Confidence 89999999999 88766554 789999988776 223 3431 1111113456888997555555542110
Q ss_pred --------C-----CccceEEEEECCCCcEEEEEecCCCCCCCCCccceEE--CCCCc-EEEEeC-----CCCeEEEEcC
Q 020019 120 --------G-----NKYSAVAAYDLSTWNRLFLTQLSGPSDGKSCADDVTV--DAEGN-AYVTDV-----TGSKIWKVGV 178 (332)
Q Consensus 120 --------~-----~~~~~l~~~d~~~g~~~~~~~l~~~~~~~~~~ndiav--d~dG~-lyvtd~-----~~~~I~~v~~ 178 (332)
. ....+|.+||.++++....+.+. .....|..+++ +|+|+ +|++.. ..+.|+++..
T Consensus 211 ~~~~~g~~~~~~~~~~~d~V~v~D~~~~k~~~tI~vg---~~g~~P~~i~f~~~Pdg~~aYV~~e~~~~~Lss~V~v~~~ 287 (462)
T 2ece_A 211 NTIEDGLKLEHLKDRYGNRIHFWDLRKRKRIHSLTLG---EENRMALELRPLHDPTKLMGFINMVVSLKDLSSSIWLWFY 287 (462)
T ss_dssp HHHTTCCCTTTHHHHSCCEEEEEETTTTEEEEEEESC---TTEEEEEEEEECSSTTCCEEEEEEEEETTTCCEEEEEEEE
T ss_pred cccccccchhhhhhccCCEEEEEECCCCcEeeEEecC---CCCCccceeEeeECCCCCEEEEEEeeeccCCCceEEEEEe
Confidence 0 02468999999988888777772 11356788877 99986 899988 8888876554
Q ss_pred C-CceE--EEecCCCC----CCccccc---C-ccccCeEEEccCc-eEEEEeCCCCeEEEEeCCCC-CCccceeEEEEec
Q 020019 179 K-GEFL--SIISSPLF----TPKEWYK---N-LVGLNGIVYHPDG-FLIVIHTFSGNLFKIDIVDG-VGEGEEIKLIRVA 245 (332)
Q Consensus 179 ~-g~~~--~~~~~~~~----~~p~~~~---~-~~~~nGi~~~~dG-~Lyva~~~~~~i~~id~~~~-~~~~~~~~~v~~~ 245 (332)
+ |+.. ..+.-+.. ..|.... . ...+.+|.+++|| .|||++...+.|..++.... +. +.+..+...
T Consensus 288 d~g~~~~~~vIdi~~~~v~~~lp~~~~~f~~~~~~pa~I~lS~DGrfLYVSnrg~d~VavfdV~d~~~~--~lv~~I~tG 365 (462)
T 2ece_A 288 EDGKWNAEKVIEIPAEPLEGNLPEILKPFKAVPPLVTDIDISLDDKFLYLSLWGIGEVRQYDISNPFKP--VLTGKVKLG 365 (462)
T ss_dssp ETTEEEEEEEEEECCEECCSSCCGGGGGGTEECCCCCCEEECTTSCEEEEEETTTTEEEEEECSSTTSC--EEEEEEECB
T ss_pred cCCceeEEEEEeCCCccccccccccccccccCCCceeEEEECCCCCEEEEEeCCCCEEEEEEecCCCCc--EEEEEEEeC
Confidence 3 4321 22211110 0010000 0 2458999999999 99999999999999997632 21 345666655
Q ss_pred CC----------CC-CCCCeEEEeCCCe-EEEEe
Q 020019 246 GG----------PL-SFGDGLELLSPTK-LVVAG 267 (332)
Q Consensus 246 g~----------~~-~~pdGi~~~~dG~-l~va~ 267 (332)
|. .+ ..|.++++++||+ |||++
T Consensus 366 G~~~~~~~~~G~~~~ggPr~~~lSpDGk~LyVaN 399 (462)
T 2ece_A 366 GIFHRADHPAGHKLTGAPQMLEISRDGRRVYVTN 399 (462)
T ss_dssp TTTTCBCCTTSCCCCSCCCCEEECTTSSEEEEEC
T ss_pred CeeccccccccccCCCCCCEEEEcCCCCEEEEEc
Confidence 31 11 3699999999975 88888
|
| >3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ... | Back alignment and structure |
|---|
Probab=99.27 E-value=1.8e-09 Score=101.09 Aligned_cols=246 Identities=12% Similarity=0.049 Sum_probs=139.7
Q ss_pred EEcCCCCEEEEE-ec----CCeEEEEECCCCCCCccceeeeEEecccCcCCCccceEEEeCCCCeEEEEEeCcCC----C
Q 020019 51 KWDDSGRRFIVS-FL----DGGIGQVAVPDDYPPGTVLEEVTLVKDLELTGNGSLGLVLDHPRNRLLVVAADVFG----N 121 (332)
Q Consensus 51 a~d~~g~~~~~~-~~----~g~I~~vd~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~vd~~~g~l~v~~~~~~~----~ 121 (332)
...|+++.+|+. .. .++|+++|..+.+ +.. ++. .|..|. |+++|+..+||+++..... .
T Consensus 39 ~~~pd~~~vyV~~~~~~~~~~~V~ViD~~t~~----v~~--~I~-----vG~~P~-va~spDG~~lyVan~~~~r~~~G~ 106 (386)
T 3sjl_D 39 APAPDARRVYVNDPAHFAAVTQQFVIDGEAGR----VIG--MID-----GGFLPN-PVVADDGSFIAHASTVFSRIARGE 106 (386)
T ss_dssp CCCCCTTEEEEEECGGGCSSEEEEEEETTTTE----EEE--EEE-----ECSSCE-EEECTTSSCEEEEEEEEEETTEEE
T ss_pred ccCCCCCEEEEEcCcccCCCCEEEEEECCCCe----EEE--EEE-----CCCCCc-EEECCCCCEEEEEcccccccccCC
Confidence 345777765554 54 6799999988765 222 221 123574 9999986679999741100 0
Q ss_pred ccceEEEEECCCCcEEEEEecCCCC--CCCCCccceEECCCCc-EEEEeCC-CCeEEEEcCC-CceEEEecCCCCC----
Q 020019 122 KYSAVAAYDLSTWNRLFLTQLSGPS--DGKSCADDVTVDAEGN-AYVTDVT-GSKIWKVGVK-GEFLSIISSPLFT---- 192 (332)
Q Consensus 122 ~~~~l~~~d~~~g~~~~~~~l~~~~--~~~~~~ndiavd~dG~-lyvtd~~-~~~I~~v~~~-g~~~~~~~~~~~~---- 192 (332)
..+.|.+||.+++++...+.++... .....|.+++++|||+ +||++.. .+.|..+|.. ++....+..+...
T Consensus 107 ~~~~VsviD~~t~~v~~~I~v~~g~r~~~g~~P~~~a~spDGk~lyVan~~~~~~VsVID~~t~~vv~tI~v~g~~~~~P 186 (386)
T 3sjl_D 107 RTDYVEVFDPVTLLPTADIELPDAPRFLVGTYPWMTSLTPDGKTLLFYQFSPAPAVGVVDLEGKAFKRMLDVPDCYHIFP 186 (386)
T ss_dssp EEEEEEEECTTTCCEEEEEEETTCCCCCBSCCGGGEEECTTSSEEEEEECSSSCEEEEEETTTTEEEEEEECCSEEEEEE
T ss_pred CCCEEEEEECCCCeEEEEEECCCccccccCCCCceEEEcCCCCEEEEEEcCCCCeEEEEECCCCcEEEEEECCCcceeec
Confidence 1356899999999988877773200 0125799999999996 9999864 6888888876 3333222111000
Q ss_pred --------------------Cc-cc----ccCcc------ccCeEEEc-cCce-EEEEeCCCCeEEEEeCCCCCCcccee
Q 020019 193 --------------------PK-EW----YKNLV------GLNGIVYH-PDGF-LIVIHTFSGNLFKIDIVDGVGEGEEI 239 (332)
Q Consensus 193 --------------------~p-~~----~~~~~------~~nGi~~~-~dG~-Lyva~~~~~~i~~id~~~~~~~~~~~ 239 (332)
.+ .. ..... ..+..+|+ ++|+ +|++. +++|+.+|..+++. +..
T Consensus 187 ~g~~~~~~~~~DG~~~~v~~~~~g~v~~~~~~~~~~~~~~~~~~~~~~~~dG~~~~vs~--~g~V~v~d~~~~~~--~v~ 262 (386)
T 3sjl_D 187 TAPDTFFMHCRDGSLAKVAFGTEGTPEITHTEVFHPEDEFLINHPAYSQKAGRLVWPTY--TGKIHQIDLSSGDA--KFL 262 (386)
T ss_dssp EETTEEEEEETTSCEEEEECCSSSCCEEEECCCCSCTTSCBCSCCEEETTTTEEEEEBT--TSEEEEEECTTSSC--EEC
T ss_pred CCCceeEEECCCCCEEEEECCCCCeEEEeecceeccccccccccceeEcCCCcEEEEeC--CCEEEEEECCCCcc--eee
Confidence 00 00 00000 01123443 5674 45443 56788888765521 112
Q ss_pred EEEEecCC----CCCCCCe---EEEeCC-CeEEEEeC-----------CceEEEEcCCCceEEEEEeeecCCCcccceEE
Q 020019 240 KLIRVAGG----PLSFGDG---LELLSP-TKLVVAGN-----------PSARLVESSDGWETAAVVAKFSGPVHRLATAA 300 (332)
Q Consensus 240 ~~v~~~g~----~~~~pdG---i~~~~d-G~l~va~~-----------~~~~~v~~~dg~~~~~~~~~~~~~~~~~pt~v 300 (332)
..+.+-.. .--.|.| ++++++ +++||+.+ +..+++....+ ++++.+..+ ..|.++
T Consensus 263 ~~~~~~~~~~~~~g~~p~g~q~~a~~~~~~~lyV~~~~~~~~~hk~~~~~V~viD~~t~----kv~~~i~vg--~~~~~l 336 (386)
T 3sjl_D 263 PAVEALTEAERADGWRPGGWQQVAYHRALDRIYLLVDQRDEWRHKTASRFVVVLDAKTG----ERLAKFEMG--HEIDSI 336 (386)
T ss_dssp CCEESSCHHHHHTTEEECSSSCEEEETTTTEEEEEEEECCTTCTTSCEEEEEEEETTTC----CEEEEEEEE--EEECEE
T ss_pred cceeccccccccccccCCCcceeeECCCCCeEEEEeccccccccCCCCCEEEEEECCCC----eEEEEEECC--CCcceE
Confidence 22221000 0012333 888876 78999863 12344555555 455554432 346789
Q ss_pred EE-ECC--eEEEEEecCcccc
Q 020019 301 TV-KDG--RVYLNHMLGFGYP 318 (332)
Q Consensus 301 a~-~~g--~lyv~~~~g~~~~ 318 (332)
++ .++ +||++++.+.+++
T Consensus 337 avs~D~~~~ly~tn~~~~~Vs 357 (386)
T 3sjl_D 337 NVSQDEKPLLYALSTGDKTLY 357 (386)
T ss_dssp EECSSSSCEEEEEETTTTEEE
T ss_pred EECCCCCeEEEEEcCCCCeEE
Confidence 99 454 6888888776654
|
| >2g8s_A Glucose/sorbosone dehydrogenases; bladed beta-propellor, pyrolloquinoline quinone (PQQ), quinoprotein, sugar binding protein; HET: MSE; 1.50A {Escherichia coli K12} | Back alignment and structure |
|---|
Probab=99.26 E-value=3.8e-10 Score=104.75 Aligned_cols=209 Identities=10% Similarity=-0.001 Sum_probs=126.5
Q ss_pred cccceEEcCC----CCEEEEEec-------CCeEEEEECCCCCCCccceeeeEEec-ccCc--CCCccceEEEeCCCCeE
Q 020019 46 FRECAKWDDS----GRRFIVSFL-------DGGIGQVAVPDDYPPGTVLEEVTLVK-DLEL--TGNGSLGLVLDHPRNRL 111 (332)
Q Consensus 46 ~pegia~d~~----g~~~~~~~~-------~g~I~~vd~~~~~~~~~~~~~~~~~~-~~~~--~~~~~~gi~vd~~~g~l 111 (332)
.|.+++++|+ +.+|++... ..+|++++.+..... +.+...++. .|.. ....+.+|+++++ |.|
T Consensus 67 g~~gia~~pdf~~~g~lYv~~~~~~~~g~~~~~v~r~~~~~~~~~--~~~~~~i~~~~p~~~~~~h~~~~l~~~pd-G~L 143 (353)
T 2g8s_A 67 GLLDVVLAPDFAQSRRIWLSYSEVGDDGKAGTAVGYGRLSDDLSK--VTDFRTVFRQMPKLSTGNHFGGRLVFDGK-GYL 143 (353)
T ss_dssp SEEEEEECTTHHHHCEEEEEEEEECSSSCEEEEEEEEEECTTSSB--EEEEEEEEECSSCCBSSSCCCCCEEECSS-SEE
T ss_pred CceeEEECCCCCCCCEEEEEEeCCCCCCCceeEEEEEEECCCCCC--CCceEEEEEECCCCCCCcccCccEEECCC-CcE
Confidence 5678999994 777776532 347999887543210 111112322 2321 1124789999997 999
Q ss_pred EEEEeCcCC--------CccceEEEEECCCCcE-------------EEEEecCCCCCCCCCccceEECC-CCcEEEEeCC
Q 020019 112 LVVAADVFG--------NKYSAVAAYDLSTWNR-------------LFLTQLSGPSDGKSCADDVTVDA-EGNAYVTDVT 169 (332)
Q Consensus 112 ~v~~~~~~~--------~~~~~l~~~d~~~g~~-------------~~~~~l~~~~~~~~~~ndiavd~-dG~lyvtd~~ 169 (332)
|++..+... ...++|+++|++. +. ...+.. +...|.++++|+ +|+||++|.+
T Consensus 144 yv~~Gd~~~~~~~q~~~~~~g~I~ri~~dG-~~p~~npf~~~~~~~~~i~a~-----G~rnp~gl~~d~~~g~l~~~d~g 217 (353)
T 2g8s_A 144 FIALGENNQRPTAQDLDKLQGKLVRLTDQG-EIPDDNPFIKESGVRAEIWSY-----GIRNPQGMAMNPWSNALWLNEHG 217 (353)
T ss_dssp EEEECCTTCGGGGGCTTSCTTEEEEEETTS-CCCTTCTTTTSTTSCTTEEEE-----CCSEEEEEEEETTTTEEEEEEEC
T ss_pred EEEECCCCCCCccCCCCCCCeEEEEECCCC-CCCCCCCCcCCCCCCccEEEE-----cCcCccceEEECCCCCEEEEecC
Confidence 999865321 1235799999863 21 000111 235699999999 6999999986
Q ss_pred CC---eEEEEcCCCceE---EEe----c-----------CCCCCCccc-ccCccccCeEEEcc-------CceEEEEeCC
Q 020019 170 GS---KIWKVGVKGEFL---SII----S-----------SPLFTPKEW-YKNLVGLNGIVYHP-------DGFLIVIHTF 220 (332)
Q Consensus 170 ~~---~I~~v~~~g~~~---~~~----~-----------~~~~~~p~~-~~~~~~~nGi~~~~-------dG~Lyva~~~ 220 (332)
.. .|.++.+.+..- ... . .+.+..|.. ......|.|+++.. +|.+|+++..
T Consensus 218 ~~~~dei~~i~~G~nyGwp~~~~~~~~~~~~~~~~~~~~~~~~~~P~~~~~~~~ap~G~~~y~g~~fp~~~g~l~v~~~~ 297 (353)
T 2g8s_A 218 PRGGDEINIPQKGKNYGWPLATWGINYSGFKIPEAKGEIVAGTEQPVFYWKDSPAVSGMAFYNSDKFPQWQQKLFIGALK 297 (353)
T ss_dssp SBSCEEEECCCTTCBCCTTTBCSSBCTTSSCCTTCCBSSCTTSCCCSEEESSCCCEEEEEEECCSSSGGGTTEEEEEETT
T ss_pred CCCCcEEeEeccCCcCCCCCccCCCCCCCCccCcccCCCCCCccCCeEEeCCCcCcceeEEECCccCcccCCcEEEEEcc
Confidence 43 566665432210 000 0 001112221 11234689999974 5799999999
Q ss_pred CCeEEEEeCCCCCCccceeEEEEecCCCCCCCCeEEEeCCCeEEEEe
Q 020019 221 SGNLFKIDIVDGVGEGEEIKLIRVAGGPLSFGDGLELLSPTKLVVAG 267 (332)
Q Consensus 221 ~~~i~~id~~~~~~~~~~~~~v~~~g~~~~~pdGi~~~~dG~l~va~ 267 (332)
.++|++++++.++ .+....+-......|.+|++++||.|||++
T Consensus 298 ~~~v~~~~~~~~~----~~~~~~~~~~~~~rp~~v~~~pdG~lyv~t 340 (353)
T 2g8s_A 298 DKDVIVMSVNGDK----VTEDGRILTDRGQRIRDVRTGPDGYLYVLT 340 (353)
T ss_dssp TTEEEEEEEETTE----EEEEEEESGGGCCCEEEEEECTTSCEEEEE
T ss_pred CCEEEEEEeCCCe----EeeeEEcccCCCCceeEEEECCCCcEEEEE
Confidence 9999999998542 222222210123589999999999999984
|
| >1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A* | Back alignment and structure |
|---|
Probab=99.24 E-value=6.2e-09 Score=102.58 Aligned_cols=236 Identities=17% Similarity=0.048 Sum_probs=146.8
Q ss_pred cccceEEcCC-CC-EEEEEecCCeEEEEECCCCCCCccceeeeEEecccCcCCCccceEEEeCCCCeEEEEEeCcCCCcc
Q 020019 46 FRECAKWDDS-GR-RFIVSFLDGGIGQVAVPDDYPPGTVLEEVTLVKDLELTGNGSLGLVLDHPRNRLLVVAADVFGNKY 123 (332)
Q Consensus 46 ~pegia~d~~-g~-~~~~~~~~g~I~~vd~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~vd~~~g~l~v~~~~~~~~~~ 123 (332)
.|..+.+..| ++ +|++...+++|..+|..+++. .. ++. .+..|.+++++++...+|+++. .
T Consensus 155 ~P~~~~~~~d~~~~~~V~~~~~~~V~viD~~t~~v----~~--~i~-----~g~~p~~v~~SpDGr~lyv~~~------d 217 (567)
T 1qks_A 155 RPTQQMNDWDLENLFSVTLRDAGQIALIDGSTYEI----KT--VLD-----TGYAVHISRLSASGRYLFVIGR------D 217 (567)
T ss_dssp SCSSCCSCCCGGGEEEEEETTTTEEEEEETTTCCE----EE--EEE-----CSSCEEEEEECTTSCEEEEEET------T
T ss_pred cccccccccCCCceEEEEeCCCCeEEEEECCCCeE----EE--EEe-----CCCCccceEECCCCCEEEEEcC------C
Confidence 4555554444 33 444557789999999987762 22 221 1236789999998556888764 3
Q ss_pred ceEEEEECC--CCcEEEEEecCCCCCCCCCccceEEC----CCCc-EEEEeCCCCeEEEEcCC-CceEEEecCCCCCCcc
Q 020019 124 SAVAAYDLS--TWNRLFLTQLSGPSDGKSCADDVTVD----AEGN-AYVTDVTGSKIWKVGVK-GEFLSIISSPLFTPKE 195 (332)
Q Consensus 124 ~~l~~~d~~--~g~~~~~~~l~~~~~~~~~~ndiavd----~dG~-lyvtd~~~~~I~~v~~~-g~~~~~~~~~~~~~p~ 195 (332)
+.|.+||+. +++....+.. ...|.+++++ |||+ +|+++...+.|..+|.. .+....+.........
T Consensus 218 g~V~viD~~~~t~~~v~~i~~------G~~P~~ia~s~~~~pDGk~l~v~n~~~~~v~ViD~~t~~~~~~i~~~~~~~~~ 291 (567)
T 1qks_A 218 GKVNMIDLWMKEPTTVAEIKI------GSEARSIETSKMEGWEDKYAIAGAYWPPQYVIMDGETLEPKKIQSTRGMTYDE 291 (567)
T ss_dssp SEEEEEETTSSSCCEEEEEEC------CSEEEEEEECCSTTCTTTEEEEEEEETTEEEEEETTTCCEEEEEECCEECTTT
T ss_pred CeEEEEECCCCCCcEeEEEec------CCCCceeEEccccCCCCCEEEEEEccCCeEEEEECCCCcEEEEEecccccccc
Confidence 579999995 7776655443 3568899999 6985 99999999999999965 3443332211110000
Q ss_pred -cccCccccCeEEEccCc-eEEEEeCCCCeEEEEeCCCCCCccceeEEEEecCCCCCCCCeEEEeCCCe-EEEEeCCc--
Q 020019 196 -WYKNLVGLNGIVYHPDG-FLIVIHTFSGNLFKIDIVDGVGEGEEIKLIRVAGGPLSFGDGLELLSPTK-LVVAGNPS-- 270 (332)
Q Consensus 196 -~~~~~~~~nGi~~~~dG-~Lyva~~~~~~i~~id~~~~~~~~~~~~~v~~~g~~~~~pdGi~~~~dG~-l~va~~~~-- 270 (332)
.........+|..++++ .+|++...+++|+.++..+.+. ..+..+... ..|.++.++++|+ +|++++.+
T Consensus 292 ~~~~p~~rva~i~~s~~~~~~vv~~~~~g~v~~vd~~~~~~--~~v~~i~~~----~~~~d~~~~pdgr~~~va~~~sn~ 365 (567)
T 1qks_A 292 QEYHPEPRVAAILASHYRPEFIVNVKETGKILLVDYTDLNN--LKTTEISAE----RFLHDGGLDGSHRYFITAANARNK 365 (567)
T ss_dssp CCEESCCCEEEEEECSSSSEEEEEETTTTEEEEEETTCSSE--EEEEEEECC----SSEEEEEECTTSCEEEEEEGGGTE
T ss_pred ccccCCCceEEEEEcCCCCEEEEEecCCCeEEEEecCCCcc--ceeeeeecc----ccccCceECCCCCEEEEEeCCCCe
Confidence 00001134578899988 8899999999999999986521 123333321 4678899999988 56666533
Q ss_pred eEEEEcCCCceEEEEEeeecC-CCcccc-eEEEE--E-CCeEEEEEecC
Q 020019 271 ARLVESSDGWETAAVVAKFSG-PVHRLA-TAATV--K-DGRVYLNHMLG 314 (332)
Q Consensus 271 ~~~v~~~dg~~~~~~~~~~~~-~~~~~p-t~va~--~-~g~lyv~~~~g 314 (332)
..++...++ ++...+.. .....| .+..+ . ++.+|+++.++
T Consensus 366 V~ViD~~t~----kl~~~i~vgg~~Phpg~g~~~~~p~~g~v~~t~~~g 410 (567)
T 1qks_A 366 LVVIDTKEG----KLVAIEDTGGQTPHPGRGANFVHPTFGPVWATSHMG 410 (567)
T ss_dssp EEEEETTTT----EEEEEEECSSSSBCCTTCEEEEETTTEEEEEEEBSS
T ss_pred EEEEECCCC----cEEEEEeccCcCCCCccceeeECCCCCcEEEeCCCC
Confidence 444566666 33333332 222222 13333 2 57888877665
|
| >3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis} | Back alignment and structure |
|---|
Probab=99.24 E-value=4.4e-09 Score=94.96 Aligned_cols=213 Identities=10% Similarity=0.112 Sum_probs=135.9
Q ss_pred eEEcCCCCEEEEEecCCeEEEEECCCCCCCccceeeeEEecccCcCCCccceEEEeCCCCeEEEEEeCcCCCccceEEEE
Q 020019 50 AKWDDSGRRFIVSFLDGGIGQVAVPDDYPPGTVLEEVTLVKDLELTGNGSLGLVLDHPRNRLLVVAADVFGNKYSAVAAY 129 (332)
Q Consensus 50 ia~d~~g~~~~~~~~~g~I~~vd~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~vd~~~g~l~v~~~~~~~~~~~~l~~~ 129 (332)
+++. ++++|+++ .++.|+++++. ++. .+..... ......+.++++ |++|++.. .+.|+.|
T Consensus 103 ~~~~-~~~l~v~t-~~~~l~~~d~~-g~~--------~~~~~~~--~~~~~~~~~~~~-g~l~vgt~------~~~l~~~ 162 (330)
T 3hxj_A 103 FTIF-EDILYVTS-MDGHLYAINTD-GTE--------KWRFKTK--KAIYATPIVSED-GTIYVGSN------DNYLYAI 162 (330)
T ss_dssp EEEE-TTEEEEEC-TTSEEEEECTT-SCE--------EEEEECS--SCCCSCCEECTT-SCEEEECT------TSEEEEE
T ss_pred ceEE-CCEEEEEe-cCCEEEEEcCC-CCE--------EEEEcCC--CceeeeeEEcCC-CEEEEEcC------CCEEEEE
Confidence 4444 56666544 46889999987 541 2221111 113456677875 89999864 2579999
Q ss_pred ECCCCcEEEEEecCCCCCCCCCccceEECCCCcEEEEeCCCCeEEEEcCCCceEEEecCCCCCCcccccCccccCeEEEc
Q 020019 130 DLSTWNRLFLTQLSGPSDGKSCADDVTVDAEGNAYVTDVTGSKIWKVGVKGEFLSIISSPLFTPKEWYKNLVGLNGIVYH 209 (332)
Q Consensus 130 d~~~g~~~~~~~l~~~~~~~~~~ndiavd~dG~lyvtd~~~~~I~~v~~~g~~~~~~~~~~~~~p~~~~~~~~~nGi~~~ 209 (332)
|.+ |+..+...+. ......+++|++|++|++. +.|++++.+|+........ ......++++
T Consensus 163 d~~-g~~~~~~~~~-----~~~~~~~~~d~~g~l~v~t---~~l~~~d~~g~~~~~~~~~----------~~~~~~~~~~ 223 (330)
T 3hxj_A 163 NPD-GTEKWRFKTN-----DAITSAASIGKDGTIYFGS---DKVYAINPDGTEKWNFYAG----------YWTVTRPAIS 223 (330)
T ss_dssp CTT-SCEEEEEECS-----SCCCSCCEECTTCCEEEES---SSEEEECTTSCEEEEECCS----------SCCCSCCEEC
T ss_pred CCC-CCEeEEEecC-----CCceeeeEEcCCCEEEEEe---CEEEEECCCCcEEEEEccC----------CcceeceEEC
Confidence 998 8877666552 2356678999999999998 8899999877754332211 1235688999
Q ss_pred cCceEEEEeCCCCeEEEEeCCCCCCccceeEEEEecCCCCCCCCeEEEeCCCeEEEEeCCceEEEEcCCCceEEEEEeee
Q 020019 210 PDGFLIVIHTFSGNLFKIDIVDGVGEGEEIKLIRVAGGPLSFGDGLELLSPTKLVVAGNPSARLVESSDGWETAAVVAKF 289 (332)
Q Consensus 210 ~dG~Lyva~~~~~~i~~id~~~~~~~~~~~~~v~~~g~~~~~pdGi~~~~dG~l~va~~~~~~~v~~~dg~~~~~~~~~~ 289 (332)
++|.||++.. .+.|++++.++. ....+... ...+..+.++++|+||++..........++| +. ....
T Consensus 224 ~~g~l~v~t~-~~gl~~~~~~g~-----~~~~~~~~---~~~~~~~~~~~~g~l~v~t~~ggl~~~d~~g-~~---~~~~ 290 (330)
T 3hxj_A 224 EDGTIYVTSL-DGHLYAINPDGT-----EKWRFKTG---KRIESSPVIGNTDTIYFGSYDGHLYAINPDG-TE---KWNF 290 (330)
T ss_dssp TTSCEEEEET-TTEEEEECTTSC-----EEEEEECS---SCCCSCCEECTTSCEEEECTTCEEEEECTTS-CE---EEEE
T ss_pred CCCeEEEEcC-CCeEEEECCCCC-----EeEEeeCC---CCccccceEcCCCeEEEecCCCCEEEECCCC-cE---EEEE
Confidence 9999999875 567999976433 34434432 1234567888899999998764343455666 22 2212
Q ss_pred cCCCcccceEEEE-ECCeEEEEEecCc
Q 020019 290 SGPVHRLATAATV-KDGRVYLNHMLGF 315 (332)
Q Consensus 290 ~~~~~~~pt~va~-~~g~lyv~~~~g~ 315 (332)
..+. ....+++. .+|+||+...-|.
T Consensus 291 ~~~~-~~~~~~~~d~~g~l~~gt~~G~ 316 (330)
T 3hxj_A 291 ETGS-WIIATPVIDENGTIYFGTRNGK 316 (330)
T ss_dssp ECSS-CCCSCCEECTTCCEEEECTTSC
T ss_pred EcCC-ccccceEEcCCCEEEEEcCCCe
Confidence 2121 22345666 7899999665553
|
| >1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1 | Back alignment and structure |
|---|
Probab=99.24 E-value=5.3e-10 Score=104.32 Aligned_cols=236 Identities=11% Similarity=-0.057 Sum_probs=137.7
Q ss_pred CCEEEEEecCC----eEEEEECCCCCCCccceeeeEEecccCcCCCccceEEEeCCCCeEEEEEeCcC----CCccceEE
Q 020019 56 GRRFIVSFLDG----GIGQVAVPDDYPPGTVLEEVTLVKDLELTGNGSLGLVLDHPRNRLLVVAADVF----GNKYSAVA 127 (332)
Q Consensus 56 g~~~~~~~~~g----~I~~vd~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~vd~~~g~l~v~~~~~~----~~~~~~l~ 127 (332)
.++|+++...+ +|+.+|+++.+ +.. ++. .|..| |++++++..++||++.... +.+.+.|.
T Consensus 32 ~~~yV~~~~~~~~~d~vsvID~~t~~----v~~--~i~-----vG~~P-~i~~spDg~~lyVan~~~~r~~~G~~~~~Vs 99 (368)
T 1mda_H 32 RRSHITLPAYFAGTTENWVSCAGCGV----TLG--HSL-----GAFLS-LAVAGHSGSDFALASTSFARSAKGKRTDYVE 99 (368)
T ss_dssp TEEEEEECTTTCSSEEEEEEETTTTE----EEE--EEE-----ECTTC-EEEECTTSSCEEEEEEEETTTTSSSEEEEEE
T ss_pred CeEEEECCccCCccceEEEEECCCCe----EEE--EEe-----CCCCC-ceEECCCCCEEEEEcccccccccCCCCCEEE
Confidence 45777775555 89999988776 222 222 12367 9999998778999984211 01246799
Q ss_pred EEECCCCcEEEEEecCCCCC--CCCCccceEECCCC-cEEEEeCC-CCeEEE--EcCCCceEEEecCCCC--CCcc----
Q 020019 128 AYDLSTWNRLFLTQLSGPSD--GKSCADDVTVDAEG-NAYVTDVT-GSKIWK--VGVKGEFLSIISSPLF--TPKE---- 195 (332)
Q Consensus 128 ~~d~~~g~~~~~~~l~~~~~--~~~~~ndiavd~dG-~lyvtd~~-~~~I~~--v~~~g~~~~~~~~~~~--~~p~---- 195 (332)
+||+.++++...+.++++.. ....|.+++++||| .+||++.. .+.|.. +|+.. ..++ ..+.. ..|.
T Consensus 100 viD~~T~~vv~~I~v~~~~~~~~g~~P~~ia~SpDGk~lyVan~~~~~~v~V~~iD~~t-v~~i-~v~~~~~~~p~g~~~ 177 (368)
T 1mda_H 100 VFDPVTFLPIADIELPDAPRFSVGPRVHIIGNCASSACLLFFLFGSSAAAGLSVPGASD-DQLT-KSASCFHIHPGAAAT 177 (368)
T ss_dssp EECTTTCCEEEEEEETTSCSCCBSCCTTSEEECTTSSCEEEEECSSSCEEEEEETTTEE-EEEE-ECSSCCCCEEEETTE
T ss_pred EEECCCCCEEEEEECCCccccccCCCcceEEEcCCCCEEEEEccCCCCeEEEEEEchhh-ceEE-ECCCceEEccCCCeE
Confidence 99999999988887742110 12579999999998 59999876 567777 78743 1111 10000 0000
Q ss_pred -------------------------------cccCccccCeEEEccCc-eEEEEeCCCCeEEEEeCCCCCCccceeEEEE
Q 020019 196 -------------------------------WYKNLVGLNGIVYHPDG-FLIVIHTFSGNLFKIDIVDGVGEGEEIKLIR 243 (332)
Q Consensus 196 -------------------------------~~~~~~~~nGi~~~~dG-~Lyva~~~~~~i~~id~~~~~~~~~~~~~v~ 243 (332)
..+....|. + .+++ .+|++.. ++++.+|..+.+. +.+..+.
T Consensus 178 ~~~~~~dg~~~~vd~~~~~~~~~~v~~~~t~~i~vg~~P~--~-~~~~~~~~~vs~--~~V~viD~~~~~~--~v~~~~~ 250 (368)
T 1mda_H 178 HYLGSCPASLAASDLAAAPAAAGIVGAQCTGAQNCSSQAA--Q-ANYPGMLVWAVA--SSILQGDIPAAGA--TMKAAID 250 (368)
T ss_dssp EECCCCTTSCEEEECCSSCCCCEECCCCSCTTSCBCSCCE--E-ETTTTEEEECBS--SCCEEEECCSSCC--EEECCCC
T ss_pred EEEEcCCCCEEEEECccccccCCeEEEEeeeeeeCCCCcc--c-cccCCEEEEEcC--CEEEEEECCCCcc--eEEEEEE
Confidence 000001122 3 3444 6555555 7788888865311 0111121
Q ss_pred ecC----CCCCCCCe---EEEeCC-CeEEEEeC---C-------ceEEEEcCCCceEEEEEeeecCCCcccceEEEE-EC
Q 020019 244 VAG----GPLSFGDG---LELLSP-TKLVVAGN---P-------SARLVESSDGWETAAVVAKFSGPVHRLATAATV-KD 304 (332)
Q Consensus 244 ~~g----~~~~~pdG---i~~~~d-G~l~va~~---~-------~~~~v~~~dg~~~~~~~~~~~~~~~~~pt~va~-~~ 304 (332)
+.. .....|.| +++++| +++||+.. . ...++....+ +++..++.+ ..|.++++ .+
T Consensus 251 ~~~~~~~~~~~~p~g~~~v~~s~dg~~lyV~~~~~~~~~~~~~~~~~ViD~~t~----~vv~~i~vg--~~p~gi~~s~D 324 (368)
T 1mda_H 251 GNESGRKADNFRSAGFQMVAKLKNTDGIMILTVEHSRSCLAAAENTSSVTASVG----QTSGPISNG--HDSDAIIAAQD 324 (368)
T ss_dssp SSCTHHHHTTEEECSSSCEEEETTTTEEEEEEEECSSCTTSCEEEEEEEESSSC----CEEECCEEE--EEECEEEECCS
T ss_pred eccccccccccccCcceeeEEcCCCCEEEEEeccccCcccccCCCEEEEECCCC----eEEEEEECC--CCcceEEECCC
Confidence 110 01123555 889988 56999854 2 2233444444 455555432 36899999 55
Q ss_pred C-eEEEEEe-cCcccc
Q 020019 305 G-RVYLNHM-LGFGYP 318 (332)
Q Consensus 305 g-~lyv~~~-~g~~~~ 318 (332)
| ++|++++ ..+.++
T Consensus 325 g~~l~va~~~~~~~Vs 340 (368)
T 1mda_H 325 GASDNYANSAGTEVLD 340 (368)
T ss_dssp SSCEEEEEETTTTEEE
T ss_pred CCEEEEEccCCCCeEE
Confidence 4 6999888 466665
|
| >2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ... | Back alignment and structure |
|---|
Probab=99.23 E-value=1.1e-08 Score=95.03 Aligned_cols=111 Identities=10% Similarity=0.111 Sum_probs=75.6
Q ss_pred CEEEEEe-----cCCeEEEEECCCCCCCccceeeeEEecccCcCCCccceEEEeCCCCeEEEEEeCcC----CCccceEE
Q 020019 57 RRFIVSF-----LDGGIGQVAVPDDYPPGTVLEEVTLVKDLELTGNGSLGLVLDHPRNRLLVVAADVF----GNKYSAVA 127 (332)
Q Consensus 57 ~~~~~~~-----~~g~I~~vd~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~vd~~~g~l~v~~~~~~----~~~~~~l~ 127 (332)
.+|+++. .++.|+++|..+++. .. ++. . +..| +++++++..+||+++.... ....+.|.
T Consensus 17 ~~yv~~~~~~~~~d~~v~v~D~~t~~~----~~--~i~--~---g~~p-~i~~spdg~~lyv~~~~~~~~~~g~~~~~v~ 84 (361)
T 2oiz_A 17 RIYVMDSVFMHLTESRVHVYDYTNGKF----LG--MVP--T---AFNG-HVQVSNDGKKIYTMTTYHERITRGKRSDVVE 84 (361)
T ss_dssp EEEEEECCGGGGGGCEEEEEETTTCCE----EE--EEE--C---CEEE-EEEECTTSSEEEEEEEEETTSSSSCEEEEEE
T ss_pred EEEEECCCCCccccCeEEEEECCCCeE----EE--Eec--C---CCCC-ceEECCCCCEEEEEEecccccccCCCCCEEE
Confidence 3555553 357999999877752 22 221 1 2367 9999998667999874210 01234688
Q ss_pred EEECCCCcEEEEEecCCCC-CCCCCccceEECCCCc-EEEEeCC-CCeEEEEcCC
Q 020019 128 AYDLSTWNRLFLTQLSGPS-DGKSCADDVTVDAEGN-AYVTDVT-GSKIWKVGVK 179 (332)
Q Consensus 128 ~~d~~~g~~~~~~~l~~~~-~~~~~~ndiavd~dG~-lyvtd~~-~~~I~~v~~~ 179 (332)
+||.++++....+.+.... .....|.+++++|||+ +|+++.. .+.|..+|.+
T Consensus 85 v~d~~t~~~~~~i~~~~~~~~~g~~p~~i~~spdg~~l~v~n~~~~~~v~v~d~~ 139 (361)
T 2oiz_A 85 VWDADKLTFEKEISLPPKRVQGLNYDGLFRQTTDGKFIVLQNASPATSIGIVDVA 139 (361)
T ss_dssp EEETTTCCEEEEEEECTTBCCBCCCGGGEEECTTSSEEEEEEESSSEEEEEEETT
T ss_pred EEECcCCcEEEEEEcCccccccCCCcceEEECCCCCEEEEECCCCCCeEEEEECC
Confidence 9999998888777663111 1235799999999995 8999876 6889999876
|
| >1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B* | Back alignment and structure |
|---|
Probab=99.23 E-value=3.8e-09 Score=95.08 Aligned_cols=189 Identities=7% Similarity=-0.029 Sum_probs=122.8
Q ss_pred cccceEEcCCCCEEEEEe------------cCCeEEEEECCCCCCCccceeeeEEecccCcCCCccceEEEeCCCCeEEE
Q 020019 46 FRECAKWDDSGRRFIVSF------------LDGGIGQVAVPDDYPPGTVLEEVTLVKDLELTGNGSLGLVLDHPRNRLLV 113 (332)
Q Consensus 46 ~pegia~d~~g~~~~~~~------------~~g~I~~vd~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~vd~~~g~l~v 113 (332)
.|.+++++++|+.+++.. .++.|+.++..+++. . ..+.. +..+.+++++++...||+
T Consensus 83 ~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~----~---~~~~~----~~~~~~~~~s~dg~~l~~ 151 (337)
T 1pby_B 83 SLFGAALSPDGKTLAIYESPVRLELTHFEVQPTRVALYDAETLSR----R---KAFEA----PRQITMLAWARDGSKLYG 151 (337)
T ss_dssp CTTCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEETTTTEE----E---EEEEC----CSSCCCEEECTTSSCEEE
T ss_pred cccceEECCCCCEEEEEecccccccccccccCceEEEEECCCCcE----E---EEEeC----CCCcceeEECCCCCEEEE
Confidence 688999999997655542 358999999876541 1 12211 236789999997445777
Q ss_pred EEeCcCCCccceEEEEECCCCcEEEEEecCCCCCCCCCccceEECCCCc-EEEEeCCCC---------------------
Q 020019 114 VAADVFGNKYSAVAAYDLSTWNRLFLTQLSGPSDGKSCADDVTVDAEGN-AYVTDVTGS--------------------- 171 (332)
Q Consensus 114 ~~~~~~~~~~~~l~~~d~~~g~~~~~~~l~~~~~~~~~~ndiavd~dG~-lyvtd~~~~--------------------- 171 (332)
++ +.+.+||.++++....+... ..+..+++.|+|. +|++....+
T Consensus 152 ~~--------~~i~~~d~~~~~~~~~~~~~------~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 217 (337)
T 1pby_B 152 LG--------RDLHVMDPEAGTLVEDKPIQ------SWEAETYAQPDVLAVWNQHESSGVMATPFYTARKDIDPADPTAY 217 (337)
T ss_dssp ES--------SSEEEEETTTTEEEEEECST------TTTTTTBCCCBCCCCCCCCTTTTEEEEEEEEEBTTSCTTSGGGE
T ss_pred eC--------CeEEEEECCCCcEeeeeecc------ccCCCceeCCCccEEeeeccCCCceeeeeecccccccccccccc
Confidence 72 35889999998876554431 1122346788875 676655444
Q ss_pred --eEEEEcCCC-ceEEEecCCCCCCcccccCccccCeEEEccCc-eEEEEeCCCCeEEEEeCCCCCCccceeEEEEecCC
Q 020019 172 --KIWKVGVKG-EFLSIISSPLFTPKEWYKNLVGLNGIVYHPDG-FLIVIHTFSGNLFKIDIVDGVGEGEEIKLIRVAGG 247 (332)
Q Consensus 172 --~I~~v~~~g-~~~~~~~~~~~~~p~~~~~~~~~nGi~~~~dG-~Lyva~~~~~~i~~id~~~~~~~~~~~~~v~~~g~ 247 (332)
.|+.+|... +.. ..... +....+.+++++||| .||++ +++|+.+++.++ +.+..+...
T Consensus 218 ~~~v~~~d~~~~~~~-~~~~~--------~~~~~~~~~~~s~dg~~l~~~---~~~v~~~d~~~~----~~~~~~~~~-- 279 (337)
T 1pby_B 218 RTGLLTMDLETGEMA-MREVR--------IMDVFYFSTAVNPAKTRAFGA---YNVLESFDLEKN----ASIKRVPLP-- 279 (337)
T ss_dssp EEEEEEEETTTCCEE-EEEEE--------ECSSCEEEEEECTTSSEEEEE---ESEEEEEETTTT----EEEEEEECS--
T ss_pred ccceEEEeCCCCCce-EeecC--------CCCCceeeEEECCCCCEEEEe---CCeEEEEECCCC----cCcceecCC--
Confidence 357777663 332 11110 112357789999999 89988 478999999876 244445433
Q ss_pred CCCCCCeEEEeCCCe-EEEEeCC-ceEEEEcCCC
Q 020019 248 PLSFGDGLELLSPTK-LVVAGNP-SARLVESSDG 279 (332)
Q Consensus 248 ~~~~pdGi~~~~dG~-l~va~~~-~~~~v~~~dg 279 (332)
..|.++++++||+ ||++... ...++...++
T Consensus 280 --~~~~~~~~s~dg~~l~~~~~~~~i~v~d~~~~ 311 (337)
T 1pby_B 280 --HSYYSVNVSTDGSTVWLGGALGDLAAYDAETL 311 (337)
T ss_dssp --SCCCEEEECTTSCEEEEESBSSEEEEEETTTC
T ss_pred --CceeeEEECCCCCEEEEEcCCCcEEEEECcCC
Confidence 4688999999987 7777543 3344455556
|
| >1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1 | Back alignment and structure |
|---|
Probab=99.23 E-value=4.3e-09 Score=97.36 Aligned_cols=207 Identities=12% Similarity=0.092 Sum_probs=119.7
Q ss_pred cccceEEcCCCCE-EE-EEe-------------cCCeEEEEECC-CCCCCccceeeeEEecccCcCCCccceEEEeCCCC
Q 020019 46 FRECAKWDDSGRR-FI-VSF-------------LDGGIGQVAVP-DDYPPGTVLEEVTLVKDLELTGNGSLGLVLDHPRN 109 (332)
Q Consensus 46 ~pegia~d~~g~~-~~-~~~-------------~~g~I~~vd~~-~~~~~~~~~~~~~~~~~~~~~~~~~~gi~vd~~~g 109 (332)
.|..++++++|+. |+ +.- .++.+..++.+ +++. .......... .+..+.+++++|+..
T Consensus 84 ~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~~g~v~v~~~~~~g~~----~~~~~~~~~~--~~~~~~~~~~spdG~ 157 (365)
T 1jof_A 84 HPRANDADTNTRAIFLLAAKQPPYAVYANPFYKFAGYGNVFSVSETGKL----EKNVQNYEYQ--ENTGIHGMVFDPTET 157 (365)
T ss_dssp SGGGGCTTSCCEEEEEEECSSTTCCEEEEEESSSCCEEEEEEECTTCCE----EEEEEEEECC--TTCCEEEEEECTTSS
T ss_pred CCccEEECCCCCEEEEEEecCCcceeccceeecCCceEEEEccCCCCcC----cceEeeEEeC--CCCcceEEEECCCCC
Confidence 4788999999984 33 221 46777666654 2431 1111111100 123789999999733
Q ss_pred eEEEEEeCcCCCccceEEEEECC-CCcEEEEEecCCCCCCCCCccceEECCCCc-EEEEeCCCCeEEEE--cC-CCceEE
Q 020019 110 RLLVVAADVFGNKYSAVAAYDLS-TWNRLFLTQLSGPSDGKSCADDVTVDAEGN-AYVTDVTGSKIWKV--GV-KGEFLS 184 (332)
Q Consensus 110 ~l~v~~~~~~~~~~~~l~~~d~~-~g~~~~~~~l~~~~~~~~~~ndiavd~dG~-lyvtd~~~~~I~~v--~~-~g~~~~ 184 (332)
.||+++.+ ...|.+||.+ +|+......+..+. ....|.+++++|||+ +|+++...+.|..+ +. +|+...
T Consensus 158 ~l~~~~~~-----~~~v~~~~~~~~g~~~~~~~~~~~~-~g~~p~~~~~spdg~~l~v~~~~~~~v~v~~~~~~~g~~~~ 231 (365)
T 1jof_A 158 YLYSADLT-----ANKLWTHRKLASGEVELVGSVDAPD-PGDHPRWVAMHPTGNYLYALMEAGNRICEYVIDPATHMPVY 231 (365)
T ss_dssp EEEEEETT-----TTEEEEEEECTTSCEEEEEEEECSS-TTCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEE
T ss_pred EEEEEcCC-----CCEEEEEEECCCCCEEEeeeEecCC-CCCCCCEeEECCCCCEEEEEECCCCeEEEEEEeCCCCcEEE
Confidence 57777642 3578899988 78765433332111 135689999999995 89998877776554 54 355421
Q ss_pred ---Eec-CCC-CCCcc-cccCccccCeEE-EccCc-eEEEEeCCCC-----eEEEEeCC-CCCCccceeEEEE-ecCCCC
Q 020019 185 ---IIS-SPL-FTPKE-WYKNLVGLNGIV-YHPDG-FLIVIHTFSG-----NLFKIDIV-DGVGEGEEIKLIR-VAGGPL 249 (332)
Q Consensus 185 ---~~~-~~~-~~~p~-~~~~~~~~nGi~-~~~dG-~Lyva~~~~~-----~i~~id~~-~~~~~~~~~~~v~-~~g~~~ 249 (332)
.+. .+. +.... .......+.+++ ++||| .||+++...+ +|..++++ +++ ...... .. ...
T Consensus 232 ~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~spdG~~l~v~~~~~~~~~~~~i~v~~~~~~g~----~~~~~~~~~-~~~ 306 (365)
T 1jof_A 232 THHSFPLIPPGIPDRDPETGKGLYRADVCALTFSGKYMFASSRANKFELQGYIAGFKLRDCGS----IEKQLFLSP-TPT 306 (365)
T ss_dssp EEEEEESSCTTCCCBCTTTSSBSEEEEEEEECTTSSEEEEEEEESSTTSCCEEEEEEECTTSC----EEEEEEEEE-CSS
T ss_pred ccceEEcCCCCcCCcccccccccccccEEEECCCCCEEEEECCCCCCCCCCeEEEEEECCCCC----EEEeeeeee-cCC
Confidence 111 110 00000 000011478999 99999 8999987655 77777664 442 222111 11 122
Q ss_pred CCCCeEEEeC---CC-eEEEEeCC
Q 020019 250 SFGDGLELLS---PT-KLVVAGNP 269 (332)
Q Consensus 250 ~~pdGi~~~~---dG-~l~va~~~ 269 (332)
..|.+++++| || .||+++..
T Consensus 307 ~~~~~~a~sp~~~dg~~l~v~~~~ 330 (365)
T 1jof_A 307 SGGHSNAVSPCPWSDEWMAITDDQ 330 (365)
T ss_dssp CCTTCCCEEECTTCTTEEEEECSS
T ss_pred CCcccceecCCCcCCCEEEEEEcC
Confidence 4688999998 65 57777643
|
| >3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=99.19 E-value=6.8e-09 Score=105.90 Aligned_cols=235 Identities=11% Similarity=0.067 Sum_probs=144.7
Q ss_pred ccceEEcCCCCEEEEEecCCeEEEEECCCCCCCccceeeeEEecccCcCCCccceEEEeCCCCeEEEEEeCcCCCccceE
Q 020019 47 RECAKWDDSGRRFIVSFLDGGIGQVAVPDDYPPGTVLEEVTLVKDLELTGNGSLGLVLDHPRNRLLVVAADVFGNKYSAV 126 (332)
Q Consensus 47 pegia~d~~g~~~~~~~~~g~I~~vd~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~vd~~~g~l~v~~~~~~~~~~~~l 126 (332)
..++..|++|++|++.. .+.|+++++.+++. +....+......+..|..|++ |+||++.. ..|
T Consensus 409 v~~i~~d~~g~lWigt~-~~Gl~~~~~~~~~~--------~~~~~~~~~~~~v~~i~~d~~-g~lwigt~-------~Gl 471 (781)
T 3v9f_A 409 VLCSLKDSEGNLWFGTY-LGNISYYNTRLKKF--------QIIELEKNELLDVRVFYEDKN-KKIWIGTH-------AGV 471 (781)
T ss_dssp EEEEEECTTSCEEEEET-TEEEEEECSSSCEE--------EECCSTTTCCCCEEEEEECTT-SEEEEEET-------TEE
T ss_pred eEEEEECCCCCEEEEec-cCCEEEEcCCCCcE--------EEeccCCCCCCeEEEEEECCC-CCEEEEEC-------Cce
Confidence 34677888999998653 46799999876542 122111222346788999986 99999974 368
Q ss_pred EEEECCCCcEEEEEecCCCCCCCCCccceEECCCCcEEEEeCCCCeEEEEcCCCceEEEecC-CCCCCcccccCccccCe
Q 020019 127 AAYDLSTWNRLFLTQLSGPSDGKSCADDVTVDAEGNAYVTDVTGSKIWKVGVKGEFLSIISS-PLFTPKEWYKNLVGLNG 205 (332)
Q Consensus 127 ~~~d~~~g~~~~~~~l~~~~~~~~~~ndiavd~dG~lyvtd~~~~~I~~v~~~g~~~~~~~~-~~~~~p~~~~~~~~~nG 205 (332)
.+||+++++.................++++.|++|+||++... +.|++++++++....+.. ..+. ......
T Consensus 472 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~d~~g~lWigt~~-~Gl~~~~~~~~~~~~~~~~~~l~-------~~~i~~ 543 (781)
T 3v9f_A 472 FVIDLASKKVIHHYDTSNSQLLENFVRSIAQDSEGRFWIGTFG-GGVGIYTPDMQLVRKFNQYEGFC-------SNTINQ 543 (781)
T ss_dssp EEEESSSSSCCEEECTTTSSCSCSCEEEEEECTTCCEEEEESS-SCEEEECTTCCEEEEECTTTTCS-------CSCEEE
T ss_pred EEEeCCCCeEEecccCcccccccceeEEEEEcCCCCEEEEEcC-CCEEEEeCCCCeEEEccCCCCCC-------CCeeEE
Confidence 9999988776544332111111256788999999999998764 448999988553333321 1111 123568
Q ss_pred EEEccCceEEEEeCCCCeEEEEeCCCCCCccceeEEEEec-CCCCCCCCeEEEeCCCeEEEEeCCceEEEEcCCCceEEE
Q 020019 206 IVYHPDGFLIVIHTFSGNLFKIDIVDGVGEGEEIKLIRVA-GGPLSFGDGLELLSPTKLVVAGNPSARLVESSDGWETAA 284 (332)
Q Consensus 206 i~~~~dG~Lyva~~~~~~i~~id~~~~~~~~~~~~~v~~~-g~~~~~pdGi~~~~dG~l~va~~~~~~~v~~~dg~~~~~ 284 (332)
|+.+++|.||++.. .|-|++++++++ ..+.+... |-+-....+|+.|++|+||++.+.+...+....+ +...
T Consensus 544 i~~d~~g~lWi~T~-~Glv~~~d~~~~-----~~~~~~~~~gl~~~~i~~i~~d~~g~lW~~t~~Gl~~~~~~~~-~~~~ 616 (781)
T 3v9f_A 544 IYRSSKGQMWLATG-EGLVCFPSARNF-----DYQVFQRKEGLPNTHIRAISEDKNGNIWASTNTGISCYITSKK-CFYT 616 (781)
T ss_dssp EEECTTSCEEEEET-TEEEEESCTTTC-----CCEEECGGGTCSCCCCCEEEECSSSCEEEECSSCEEEEETTTT-EEEE
T ss_pred EEECCCCCEEEEEC-CCceEEECCCCC-----cEEEccccCCCCCceEEEEEECCCCCEEEEcCCceEEEECCCC-ceEE
Confidence 88999999999876 553399998876 34444322 1111245689999999999998776443333333 3222
Q ss_pred EEe--eecCCCcccceEEEE-ECCeEEEEEecC
Q 020019 285 VVA--KFSGPVHRLATAATV-KDGRVYLNHMLG 314 (332)
Q Consensus 285 ~~~--~~~~~~~~~pt~va~-~~g~lyv~~~~g 314 (332)
... .+....+. +.+++. .+|+||+...-|
T Consensus 617 ~~~~dGl~~~~f~-~~~~~~~~~G~l~~g~~~G 648 (781)
T 3v9f_A 617 YDHSNNIPQGSFI-SGCVTKDHNGLIYFGSING 648 (781)
T ss_dssp ECGGGTCCSSCEE-EEEEEECTTSCEEEEETTE
T ss_pred ecccCCccccccc-cCceEECCCCEEEEECCCc
Confidence 211 11111111 223444 689999965444
|
| >3das_A Putative oxidoreductase; aldose sugar dehydrogenase, beta propellor, PQQ, SGDH; HET: MSE ARA PQQ; 1.60A {Streptomyces coelicolor} | Back alignment and structure |
|---|
Probab=99.18 E-value=2.7e-09 Score=98.52 Aligned_cols=156 Identities=17% Similarity=0.161 Sum_probs=100.7
Q ss_pred CCCCccceEECCCCcEEEEeCCCCeEEEEcCC-CceEEEecCCCCCCcccccCccccCeEEEccC----ceEEEEeC--C
Q 020019 148 GKSCADDVTVDAEGNAYVTDVTGSKIWKVGVK-GEFLSIISSPLFTPKEWYKNLVGLNGIVYHPD----GFLIVIHT--F 220 (332)
Q Consensus 148 ~~~~~ndiavd~dG~lyvtd~~~~~I~~v~~~-g~~~~~~~~~~~~~p~~~~~~~~~nGi~~~~d----G~Lyva~~--~ 220 (332)
+...|.+|++.|||++||++...|+|++++++ |+...+...+.. ...+..++.||+++|| |+||++.+ .
T Consensus 30 gL~~P~~ia~~pdG~llVter~~G~I~~v~~~~g~~~~v~~~~~v----~~~g~~GllGia~~Pdf~~~g~lYv~yt~~~ 105 (347)
T 3das_A 30 GLNSPWGLAPLPGGDLLVSSRDEATITRVDAKTGRKTELGEVPGV----SPSGEGGLLGIALSPDYASDHMVYAYFTSAS 105 (347)
T ss_dssp CCSSEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECTTC----CCBTTBSEEEEEECTTHHHHCEEEEEEECSS
T ss_pred CCCCceEEEEcCCCcEEEEEecCCEEEEEECCCCcEeeecccCce----eecCCCCceeeEeccccccCCEEEEEEecCC
Confidence 45789999999999999999989999999976 554333221110 1124568999999985 68998754 5
Q ss_pred CCeEEEEeCCCC-----CCccceeEEEE-ecCCCCCCCCeEEEeCCCeEEEEeC--------------CceEEEEcCCCc
Q 020019 221 SGNLFKIDIVDG-----VGEGEEIKLIR-VAGGPLSFGDGLELLSPTKLVVAGN--------------PSARLVESSDGW 280 (332)
Q Consensus 221 ~~~i~~id~~~~-----~~~~~~~~~v~-~~g~~~~~pdGi~~~~dG~l~va~~--------------~~~~~v~~~dg~ 280 (332)
.++|.|+.++.+ ... +....+. .+....-....|++++||.||++.. ....+.+.+||.
T Consensus 106 ~~~v~R~~~~~~~~~~~~~~-~~~~i~~~~p~~~~H~g~~l~fgpDG~Lyvt~Gd~~~~~~~qd~~~~~G~IlRi~~dG~ 184 (347)
T 3das_A 106 DNRIVRMLYDEKKPSGEQLG-APDTVFRGIPKGVIHNGGRIAFGPDKMLYAGTGESGDTGLSQDRKSLGGKILRMTPDGE 184 (347)
T ss_dssp SEEEEEEEBCTTSCTTCCBC-CCEEEEEEECCCSSCCCCCEEECTTSCEEEECBCTTCGGGTTCTTCSTTCEEEECTTSS
T ss_pred CCEEEEEEeCCCCcccccCC-CcEEEEEcCCCCCCccCccccCCCCCCEEEEECCCCCCccccCCCCCCCEEEEEeCCCC
Confidence 679999988752 111 1122221 2211122456799999999999941 122334556661
Q ss_pred e-------EEEEEeeecCCCcccceEEEE-ECCeEEEEEe
Q 020019 281 E-------TAAVVAKFSGPVHRLATAATV-KDGRVYLNHM 312 (332)
Q Consensus 281 ~-------~~~~~~~~~~~~~~~pt~va~-~~g~lyv~~~ 312 (332)
. ..++.. -.++-|.++++ .+|+||++..
T Consensus 185 ip~~nPf~~~~i~a----~G~RNp~Gla~dp~G~L~~~d~ 220 (347)
T 3das_A 185 PAPGNPFPGSPVYS----YGHRNVQGLAWDDKQRLFASEF 220 (347)
T ss_dssp BCTTCSSTTCCEEE----BCCSBCCEEEECTTCCEEEEEC
T ss_pred ccCCCCCCCCeEEe----eCCCCcceEEECCCCCEEEEec
Confidence 0 011211 13677899999 6799999664
|
| >1cru_A Protein (soluble quinoprotein glucose dehydrogena; beta-propeller, superbarrel; HET: PQQ; 1.50A {Acinetobacter calcoaceticus} SCOP: b.68.2.1 PDB: 1c9u_A* 1cq1_A* 1qbi_A | Back alignment and structure |
|---|
Probab=99.17 E-value=1.6e-10 Score=110.89 Aligned_cols=157 Identities=11% Similarity=0.126 Sum_probs=104.6
Q ss_pred ccceEEEeCCCCeEEEEEeCcCCCccceEEEEECCCCcEEEEEecCCCC---CCCCCccceEECC----CCcEEEEeCC-
Q 020019 98 GSLGLVLDHPRNRLLVVAADVFGNKYSAVAAYDLSTWNRLFLTQLSGPS---DGKSCADDVTVDA----EGNAYVTDVT- 169 (332)
Q Consensus 98 ~~~gi~vd~~~g~l~v~~~~~~~~~~~~l~~~d~~~g~~~~~~~l~~~~---~~~~~~ndiavd~----dG~lyvtd~~- 169 (332)
.|.+|+++++ |+|||++.. .++|++++..+|+......++... .+...+.||+++| +|.||++++.
T Consensus 28 ~P~~~a~~pd-G~l~V~e~~-----gg~I~~~~~~~g~~~~~~~~~~~~~~~~g~~Gllgia~~Pdf~~~g~lYv~~s~~ 101 (454)
T 1cru_A 28 KPHALLWGPD-NQIWLTERA-----TGKILRVNPESGSVKTVFQVPEIVNDADGQNGLLGFAFHPDFKNNPYIYISGTFK 101 (454)
T ss_dssp SEEEEEECTT-SCEEEEETT-----TCEEEEECTTTCCEEEEEECTTCCCCTTSSCSEEEEEECTTTTTSCEEEEEEEEE
T ss_pred CceEEEEcCC-CcEEEEEcC-----CCEEEEEECCCCcEeEEecCCccccccCCCCceeEEEECCCcCcCCEEEEEEecc
Confidence 7999999997 999999863 236888987767665545553211 1245677999999 6789999864
Q ss_pred -----------CCeEEEEcCCC---ce---EEEec-CCCCCCcccccCccccCeEEEccCceEEEEeCC-----------
Q 020019 170 -----------GSKIWKVGVKG---EF---LSIIS-SPLFTPKEWYKNLVGLNGIVYHPDGFLIVIHTF----------- 220 (332)
Q Consensus 170 -----------~~~I~~v~~~g---~~---~~~~~-~~~~~~p~~~~~~~~~nGi~~~~dG~Lyva~~~----------- 220 (332)
..+|+|++.+. ++ ..++. .+. ...-.+++|+|++||.|||+...
T Consensus 102 ~~~~~~~~~~~~~~v~r~~~~~~~~~~~~~~~i~~~~p~-------~~~H~~~~l~f~pDG~Lyv~~Gd~~~~~~~~~~~ 174 (454)
T 1cru_A 102 NPKSTDKELPNQTIIRRYTYNKSTDTLEKPVDLLAGLPS-------SKDHQSGRLVIGPDQKIYYTIGDQGRNQLAYLFL 174 (454)
T ss_dssp CTTC--CCSCEEEEEEEEEEETTTTEEEEEEEEEEEECC-------CSSCCEEEEEECTTSCEEEEECCTTTTSGGGTTS
T ss_pred ccCCCccccccccEEEEEEECCCCCCcCCcEEEEEcCCC-------CCCCCCCeEeECCCCeEEEEECCCCCCCcccccc
Confidence 35899987542 21 12221 111 01234789999999999998542
Q ss_pred ---------------------CCeEEEEeCCCCCCccce-----eEEEEecCCCCCCCCeEEEeCCCeEEEEeCC
Q 020019 221 ---------------------SGNLFKIDIVDGVGEGEE-----IKLIRVAGGPLSFGDGLELLSPTKLVVAGNP 269 (332)
Q Consensus 221 ---------------------~~~i~~id~~~~~~~~~~-----~~~v~~~g~~~~~pdGi~~~~dG~l~va~~~ 269 (332)
.++|+||++++....+.. ..++-.. .+..|.||+++++|+||++++.
T Consensus 175 ~~~~~~~p~~~~~~aq~~~~~~G~IlRi~~dG~ip~~Npf~~~~~~ei~a~--G~RNp~gla~dp~G~L~~~d~g 247 (454)
T 1cru_A 175 PNQAQHTPTQQELNGKDYHTYMGKVLRLNLDGSIPKDNPSFNGVVSHIYTL--GHRNPQGLAFTPNGKLLQSEQG 247 (454)
T ss_dssp CCCTTCCCCHHHHHTTCCTTCSSEEEEECTTSCCCTTCCEETTEECSEEEB--CCSEEEEEEECTTSCEEEEEEC
T ss_pred ccccccccccccccccCCCCCCeeEEEEeCCCCCCCCCCCCCCCcceEEEE--CCCCcceEEECCCCCEEEEecC
Confidence 378999998743111111 1112222 3578999999999999999853
|
| >1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A | Back alignment and structure |
|---|
Probab=99.05 E-value=9.3e-07 Score=79.10 Aligned_cols=221 Identities=12% Similarity=0.071 Sum_probs=138.1
Q ss_pred ccccceEEcCCCCEEEEEecCCeEEEEECCCCCCCccceeeeEEecccCcCCCccceEEEeCCCCeEEEEEeCcCCCccc
Q 020019 45 FFRECAKWDDSGRRFIVSFLDGGIGQVAVPDDYPPGTVLEEVTLVKDLELTGNGSLGLVLDHPRNRLLVVAADVFGNKYS 124 (332)
Q Consensus 45 ~~pegia~d~~g~~~~~~~~~g~I~~vd~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~vd~~~g~l~v~~~~~~~~~~~ 124 (332)
.....++++++++.+++...++.|..++..+++. .....+. . .......++++++...++++.. .+
T Consensus 98 ~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~----~~~~~~~-~---~~~~i~~~~~~~~~~~l~~~~~------dg 163 (337)
T 1gxr_A 98 NYIRSCKLLPDGCTLIVGGEASTLSIWDLAAPTP----RIKAELT-S---SAPACYALAISPDSKVCFSCCS------DG 163 (337)
T ss_dssp SBEEEEEECTTSSEEEEEESSSEEEEEECCCC------EEEEEEE-C---SSSCEEEEEECTTSSEEEEEET------TS
T ss_pred CcEEEEEEcCCCCEEEEEcCCCcEEEEECCCCCc----ceeeecc-c---CCCceEEEEECCCCCEEEEEeC------CC
Confidence 3556789999999888777789999999876652 0100121 1 1124678999997334444433 35
Q ss_pred eEEEEECCCCcEEEEEecCCCCCCCCCccceEECCCCcEEEEeCCCCeEEEEcCC-CceEEEecCCCCCCcccccCcccc
Q 020019 125 AVAAYDLSTWNRLFLTQLSGPSDGKSCADDVTVDAEGNAYVTDVTGSKIWKVGVK-GEFLSIISSPLFTPKEWYKNLVGL 203 (332)
Q Consensus 125 ~l~~~d~~~g~~~~~~~l~~~~~~~~~~ndiavd~dG~lyvtd~~~~~I~~v~~~-g~~~~~~~~~~~~~p~~~~~~~~~ 203 (332)
.+..||.++++....... .......+++.++|+.+++-...+.|..++.. ++....... ....
T Consensus 164 ~v~~~d~~~~~~~~~~~~-----~~~~i~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~-----------~~~v 227 (337)
T 1gxr_A 164 NIAVWDLHNQTLVRQFQG-----HTDGASCIDISNDGTKLWTGGLDNTVRSWDLREGRQLQQHDF-----------TSQI 227 (337)
T ss_dssp CEEEEETTTTEEEEEECC-----CSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEEC-----------SSCE
T ss_pred cEEEEeCCCCceeeeeec-----ccCceEEEEECCCCCEEEEEecCCcEEEEECCCCceEeeecC-----------CCce
Confidence 689999998876554332 13467889999999888887788999999976 443333221 1235
Q ss_pred CeEEEccCceEEEEeCCCCeEEEEeCCCCCCccceeEEEEecCCCCCCCCeEEEeCCCeEEEEe-C-CceEEEEcCCCce
Q 020019 204 NGIVYHPDGFLIVIHTFSGNLFKIDIVDGVGEGEEIKLIRVAGGPLSFGDGLELLSPTKLVVAG-N-PSARLVESSDGWE 281 (332)
Q Consensus 204 nGi~~~~dG~Lyva~~~~~~i~~id~~~~~~~~~~~~~v~~~g~~~~~pdGi~~~~dG~l~va~-~-~~~~~v~~~dg~~ 281 (332)
..++++|+|.++++-...+.|..+++.++ ....+ . ........+++.++|+++++. . +..++.....+ +
T Consensus 228 ~~~~~s~~~~~l~~~~~~~~i~~~~~~~~-----~~~~~--~-~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~~~~~~-~ 298 (337)
T 1gxr_A 228 FSLGYCPTGEWLAVGMESSNVEVLHVNKP-----DKYQL--H-LHESCVLSLKFAYCGKWFVSTGKDNLLNAWRTPYG-A 298 (337)
T ss_dssp EEEEECTTSSEEEEEETTSCEEEEETTSS-----CEEEE--C-CCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTC-C
T ss_pred EEEEECCCCCEEEEEcCCCcEEEEECCCC-----CeEEE--c-CCccceeEEEECCCCCEEEEecCCCcEEEEECCCC-e
Confidence 68999999944444456778999998866 22222 2 123456789999998877765 3 33344455555 2
Q ss_pred EEEEEeeecCCCcccceEEEE-ECCeEEE
Q 020019 282 TAAVVAKFSGPVHRLATAATV-KDGRVYL 309 (332)
Q Consensus 282 ~~~~~~~~~~~~~~~pt~va~-~~g~lyv 309 (332)
.... ... ....+++++ .++++++
T Consensus 299 ~~~~---~~~--~~~v~~~~~s~~~~~l~ 322 (337)
T 1gxr_A 299 SIFQ---SKE--SSSVLSCDISVDDKYIV 322 (337)
T ss_dssp EEEE---EEC--SSCEEEEEECTTSCEEE
T ss_pred EEEE---ecC--CCcEEEEEECCCCCEEE
Confidence 2111 111 233567778 5554444
|
| >4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A* | Back alignment and structure |
|---|
Probab=99.05 E-value=6.7e-08 Score=98.74 Aligned_cols=235 Identities=12% Similarity=0.088 Sum_probs=142.2
Q ss_pred cceEEcCCCC-EEEEEecCCeEEEEECCCCCCCccceeeeEEec-ccCcCCCccceEEEeCCCCeEEEEEeCcCCCccce
Q 020019 48 ECAKWDDSGR-RFIVSFLDGGIGQVAVPDDYPPGTVLEEVTLVK-DLELTGNGSLGLVLDHPRNRLLVVAADVFGNKYSA 125 (332)
Q Consensus 48 egia~d~~g~-~~~~~~~~g~I~~vd~~~~~~~~~~~~~~~~~~-~~~~~~~~~~gi~vd~~~g~l~v~~~~~~~~~~~~ 125 (332)
.++..|++|+ +|++.. .+.|+++++.+++. . .+.. .+......+..|..|++ |+||++.. ..
T Consensus 409 ~~i~~d~~g~~lWigt~-~~Gl~~~d~~~~~~-----~--~~~~~~~~l~~~~v~~i~~d~~-g~lwigt~-------~G 472 (795)
T 4a2l_A 409 KAVYVDEKKSLVYIGTH-AGGLSILHRNSGQV-----E--NFNQRNSQLVNENVYAILPDGE-GNLWLGTL-------SA 472 (795)
T ss_dssp EEEEEETTTTEEEEEET-TTEEEEEETTTCCE-----E--EECTTTSCCSCSCEEEEEECSS-SCEEEEES-------SC
T ss_pred EEEEEcCCCCEEEEEeC-cCceeEEeCCCCcE-----E--EeecCCCCcCCCeeEEEEECCC-CCEEEEec-------Cc
Confidence 4677889999 887654 46799999887652 1 2321 12223346788999985 99999974 35
Q ss_pred EEEEECCCCcEEEEEecCCC-CCCCCCccceEECCCCcEEEEeCCCCeEEEEcCCCceEEEecCCCCCCcccccCccccC
Q 020019 126 VAAYDLSTWNRLFLTQLSGP-SDGKSCADDVTVDAEGNAYVTDVTGSKIWKVGVKGEFLSIISSPLFTPKEWYKNLVGLN 204 (332)
Q Consensus 126 l~~~d~~~g~~~~~~~l~~~-~~~~~~~ndiavd~dG~lyvtd~~~~~I~~v~~~g~~~~~~~~~~~~~p~~~~~~~~~n 204 (332)
|.+||+++++.........+ .........+..|++|++|++.. +.|+++++++....+..... .+. -.....+
T Consensus 473 l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~d~~g~lWigt~--~Gl~~~~~~~~~~~~~~~~~--~~~--l~~~~i~ 546 (795)
T 4a2l_A 473 LVRFNPEQRSFTTIEKEKDGTPVVSKQITTLFRDSHKRLWIGGE--EGLSVFKQEGLDIQKASILP--VSN--VTKLFTN 546 (795)
T ss_dssp EEEEETTTTEEEECCBCTTCCBCCCCCEEEEEECTTCCEEEEES--SCEEEEEEETTEEEECCCSC--SCG--GGGSCEE
T ss_pred eeEEeCCCCeEEEccccccccccCCceEEEEEECCCCCEEEEeC--CceEEEeCCCCeEEEecCCC--CCC--CCCCeeE
Confidence 89999988766432211000 11124567899999999999886 57999988644333221000 000 0112456
Q ss_pred eEEEccCceEEEEeCCCCeEEEEeCCCCCCccceeEEEEecCCCC--CCCCeEEEeCCCeEEEEeCCceEEEEcCCCceE
Q 020019 205 GIVYHPDGFLIVIHTFSGNLFKIDIVDGVGEGEEIKLIRVAGGPL--SFGDGLELLSPTKLVVAGNPSARLVESSDGWET 282 (332)
Q Consensus 205 Gi~~~~dG~Lyva~~~~~~i~~id~~~~~~~~~~~~~v~~~g~~~--~~pdGi~~~~dG~l~va~~~~~~~v~~~dg~~~ 282 (332)
.|+.+++|.||++... -|++++++++ ..+.+... ..+ ....+|+.|++|+||++.+.+...+....+ +.
T Consensus 547 ~i~~d~~g~lWigT~~--Gl~~~d~~~~-----~~~~~~~~-~gl~~~~i~~i~~d~~g~lWi~t~~Gl~~~~~~~~-~~ 617 (795)
T 4a2l_A 547 CIYEASNGIIWVGTRE--GFYCFNEKDK-----QIKRYNTT-NGLPNNVVYGILEDSFGRLWLSTNRGISCFNPETE-KF 617 (795)
T ss_dssp EEEECTTSCEEEEESS--CEEEEETTTT-----EEEEECGG-GTCSCSCEEEEEECTTSCEEEEETTEEEEEETTTT-EE
T ss_pred EEEECCCCCEEEEeCC--CceeECCCCC-----cEEEeCCC-CCCchhheEEEEECCCCCEEEEcCCceEEEcCCCC-cE
Confidence 8899999999998764 5999998866 34444322 112 234578889999999999776443333333 32
Q ss_pred EEEEe--eecCCCcccceEEEE-ECCeEEEEEecC
Q 020019 283 AAVVA--KFSGPVHRLATAATV-KDGRVYLNHMLG 314 (332)
Q Consensus 283 ~~~~~--~~~~~~~~~pt~va~-~~g~lyv~~~~g 314 (332)
..... .+....+. ..+++. .+|+||+...-|
T Consensus 618 ~~~~~~dGl~~~~f~-~~~~~~~~~G~l~~g~~~G 651 (795)
T 4a2l_A 618 RNFTESDGLQSNQFN-TASYCRTSVGQMYFGGING 651 (795)
T ss_dssp EEECGGGTCSCSCEE-EEEEEECTTSCEEEEETTE
T ss_pred EEcCCcCCCccccCc-cCceeECCCCeEEEecCCc
Confidence 21111 11111111 123444 689999965444
|
| >4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A* | Back alignment and structure |
|---|
Probab=99.03 E-value=7.3e-08 Score=98.46 Aligned_cols=236 Identities=11% Similarity=0.040 Sum_probs=141.9
Q ss_pred ccceEEcCCCCEEEEEecCCeEEEEECCCCCCCccceeeeEEeccc-----CcCCCccceEEEeCCCCe-EEEEEeCcCC
Q 020019 47 RECAKWDDSGRRFIVSFLDGGIGQVAVPDDYPPGTVLEEVTLVKDL-----ELTGNGSLGLVLDHPRNR-LLVVAADVFG 120 (332)
Q Consensus 47 pegia~d~~g~~~~~~~~~g~I~~vd~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~gi~vd~~~g~-l~v~~~~~~~ 120 (332)
..++..|++|++|++.. .+.|.++++.+++. . .+...+ +...+.+..|..|++ |+ ||++..+
T Consensus 359 V~~i~~d~~g~lWiGt~-~~Gl~~~~~~~~~~-----~--~~~~~~~~~~~~l~~~~v~~i~~d~~-g~~lWigt~~--- 426 (795)
T 4a2l_A 359 VSCIVEDKDKNLWIGTN-DGGLNLYNPITQRF-----T--SYTLQEDESARGIGSNNIKAVYVDEK-KSLVYIGTHA--- 426 (795)
T ss_dssp EEEEEECTTSCEEEEES-SSCEEEECTTTCCE-----E--EECCC------CCSCSCEEEEEEETT-TTEEEEEETT---
T ss_pred eEEEEECCCCCEEEEEC-CCCeEEEcCCCCcE-----E--EEecCCCCcccCCCCccEEEEEEcCC-CCEEEEEeCc---
Confidence 34677899999998764 46799999876652 1 222111 122346788999986 88 9998752
Q ss_pred CccceEEEEECCCCcEEEEEecCCCCCCCCCccceEECCCCcEEEEeCCCCeEEEEcCCCceEEEecCCCCCCcccccCc
Q 020019 121 NKYSAVAAYDLSTWNRLFLTQLSGPSDGKSCADDVTVDAEGNAYVTDVTGSKIWKVGVKGEFLSIISSPLFTPKEWYKNL 200 (332)
Q Consensus 121 ~~~~~l~~~d~~~g~~~~~~~l~~~~~~~~~~ndiavd~dG~lyvtd~~~~~I~~v~~~g~~~~~~~~~~~~~p~~~~~~ 200 (332)
+.|.+||.++++..... ...+.........+..|++|+||++.. +.|++++++........... .+.. -..
T Consensus 427 ---~Gl~~~d~~~~~~~~~~-~~~~~l~~~~v~~i~~d~~g~lwigt~--~Gl~~~~~~~~~~~~~~~~~--~~~~-~~~ 497 (795)
T 4a2l_A 427 ---GGLSILHRNSGQVENFN-QRNSQLVNENVYAILPDGEGNLWLGTL--SALVRFNPEQRSFTTIEKEK--DGTP-VVS 497 (795)
T ss_dssp ---TEEEEEETTTCCEEEEC-TTTSCCSCSCEEEEEECSSSCEEEEES--SCEEEEETTTTEEEECCBCT--TCCB-CCC
T ss_pred ---CceeEEeCCCCcEEEee-cCCCCcCCCeeEEEEECCCCCEEEEec--CceeEEeCCCCeEEEccccc--cccc-cCC
Confidence 46899999988765432 211111124567899999999999876 56999998754333221110 0000 001
Q ss_pred cccCeEEEccCceEEEEeCCCCeEEEEeCCCCCCccceeEEEEe--cCCCC--CCCCeEEEeCCCeEEEEeCCceEEEEc
Q 020019 201 VGLNGIVYHPDGFLIVIHTFSGNLFKIDIVDGVGEGEEIKLIRV--AGGPL--SFGDGLELLSPTKLVVAGNPSARLVES 276 (332)
Q Consensus 201 ~~~nGi~~~~dG~Lyva~~~~~~i~~id~~~~~~~~~~~~~v~~--~g~~~--~~pdGi~~~~dG~l~va~~~~~~~v~~ 276 (332)
.....|..+++|.||++.. +-|+++++.++ .. .+.. ....+ .....|..|++|+||++...+......
T Consensus 498 ~~i~~i~~d~~g~lWigt~--~Gl~~~~~~~~-----~~-~~~~~~~~~~l~~~~i~~i~~d~~g~lWigT~~Gl~~~d~ 569 (795)
T 4a2l_A 498 KQITTLFRDSHKRLWIGGE--EGLSVFKQEGL-----DI-QKASILPVSNVTKLFTNCIYEASNGIIWVGTREGFYCFNE 569 (795)
T ss_dssp CCEEEEEECTTCCEEEEES--SCEEEEEEETT-----EE-EECCCSCSCGGGGSCEEEEEECTTSCEEEEESSCEEEEET
T ss_pred ceEEEEEECCCCCEEEEeC--CceEEEeCCCC-----eE-EEecCCCCCCCCCCeeEEEEECCCCCEEEEeCCCceeECC
Confidence 2356788999999999987 45999998865 23 2321 10111 234578889999999998765443333
Q ss_pred CCCceEEEEEeeecCCCcccceEEEE-ECCeEEEEEec
Q 020019 277 SDGWETAAVVAKFSGPVHRLATAATV-KDGRVYLNHML 313 (332)
Q Consensus 277 ~dg~~~~~~~~~~~~~~~~~pt~va~-~~g~lyv~~~~ 313 (332)
..+ +.... ....+-.-....+++. .+|+||++..-
T Consensus 570 ~~~-~~~~~-~~~~gl~~~~i~~i~~d~~g~lWi~t~~ 605 (795)
T 4a2l_A 570 KDK-QIKRY-NTTNGLPNNVVYGILEDSFGRLWLSTNR 605 (795)
T ss_dssp TTT-EEEEE-CGGGTCSCSCEEEEEECTTSCEEEEETT
T ss_pred CCC-cEEEe-CCCCCCchhheEEEEECCCCCEEEEcCC
Confidence 333 32222 1111100122344555 57899996543
|
| >3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis} | Back alignment and structure |
|---|
Probab=99.02 E-value=1.1e-07 Score=85.78 Aligned_cols=180 Identities=9% Similarity=0.007 Sum_probs=121.1
Q ss_pred cccceEEcCCCCEEEEEecCCeEEEEECCCCCCCccceeeeEEecccCcCCCccceEEEeCCCCeEEEEEeCcCCCccce
Q 020019 46 FRECAKWDDSGRRFIVSFLDGGIGQVAVPDDYPPGTVLEEVTLVKDLELTGNGSLGLVLDHPRNRLLVVAADVFGNKYSA 125 (332)
Q Consensus 46 ~pegia~d~~g~~~~~~~~~g~I~~vd~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~vd~~~g~l~v~~~~~~~~~~~~ 125 (332)
....++.+++|++|+++ .++.|+++++. ++. .+.... .......+.+|.+ |++|++. +.
T Consensus 138 ~~~~~~~~~~g~l~vgt-~~~~l~~~d~~-g~~--------~~~~~~--~~~~~~~~~~d~~-g~l~v~t--------~~ 196 (330)
T 3hxj_A 138 IYATPIVSEDGTIYVGS-NDNYLYAINPD-GTE--------KWRFKT--NDAITSAASIGKD-GTIYFGS--------DK 196 (330)
T ss_dssp CCSCCEECTTSCEEEEC-TTSEEEEECTT-SCE--------EEEEEC--SSCCCSCCEECTT-CCEEEES--------SS
T ss_pred eeeeeEEcCCCEEEEEc-CCCEEEEECCC-CCE--------eEEEec--CCCceeeeEEcCC-CEEEEEe--------CE
Confidence 34567888899988755 35899999987 541 121111 1124566788875 9999985 35
Q ss_pred EEEEECCCCcEEEEEecCCCCCCCCCccceEECCCCcEEEEeCCCCeEEEEcCCCceEEEecCCCCCCcccccCccccCe
Q 020019 126 VAAYDLSTWNRLFLTQLSGPSDGKSCADDVTVDAEGNAYVTDVTGSKIWKVGVKGEFLSIISSPLFTPKEWYKNLVGLNG 205 (332)
Q Consensus 126 l~~~d~~~g~~~~~~~l~~~~~~~~~~ndiavd~dG~lyvtd~~~~~I~~v~~~g~~~~~~~~~~~~~p~~~~~~~~~nG 205 (332)
|++|| .+++..+..... ......+++|++|++|++.. .+.|++++++|+......... .....
T Consensus 197 l~~~d-~~g~~~~~~~~~-----~~~~~~~~~~~~g~l~v~t~-~~gl~~~~~~g~~~~~~~~~~----------~~~~~ 259 (330)
T 3hxj_A 197 VYAIN-PDGTEKWNFYAG-----YWTVTRPAISEDGTIYVTSL-DGHLYAINPDGTEKWRFKTGK----------RIESS 259 (330)
T ss_dssp EEEEC-TTSCEEEEECCS-----SCCCSCCEECTTSCEEEEET-TTEEEEECTTSCEEEEEECSS----------CCCSC
T ss_pred EEEEC-CCCcEEEEEccC-----CcceeceEECCCCeEEEEcC-CCeEEEECCCCCEeEEeeCCC----------Ccccc
Confidence 88999 677766554431 24567899999999999865 578999998887553332111 12345
Q ss_pred EEEccCceEEEEeCCCCeEEEEeCCCCCCccceeEEEEecCCCCCCCCeEEEeCCCeEEEEeCCceE
Q 020019 206 IVYHPDGFLIVIHTFSGNLFKIDIVDGVGEGEEIKLIRVAGGPLSFGDGLELLSPTKLVVAGNPSAR 272 (332)
Q Consensus 206 i~~~~dG~Lyva~~~~~~i~~id~~~~~~~~~~~~~v~~~g~~~~~pdGi~~~~dG~l~va~~~~~~ 272 (332)
++++++|.||++.. .+.|++++++ ++ .......++ .....+..+++|+||++...+..
T Consensus 260 ~~~~~~g~l~v~t~-~ggl~~~d~~-g~----~~~~~~~~~---~~~~~~~~d~~g~l~~gt~~G~~ 317 (330)
T 3hxj_A 260 PVIGNTDTIYFGSY-DGHLYAINPD-GT----EKWNFETGS---WIIATPVIDENGTIYFGTRNGKF 317 (330)
T ss_dssp CEECTTSCEEEECT-TCEEEEECTT-SC----EEEEEECSS---CCCSCCEECTTCCEEEECTTSCE
T ss_pred ceEcCCCeEEEecC-CCCEEEECCC-Cc----EEEEEEcCC---ccccceEEcCCCEEEEEcCCCeE
Confidence 77888889999865 5679999974 42 344444432 34457788899999999876544
|
| >2wg3_C Hedgehog-interacting protein; lipoprotein, development, membrane, secreted, protease, PALM hydrolase, developmental protein, autocatalytic cleavage; HET: NAG; 2.60A {Homo sapiens} PDB: 2wg4_B 2wfx_B 2wft_A 3ho3_A 3ho4_A 3ho5_A | Back alignment and structure |
|---|
Probab=99.02 E-value=1.5e-07 Score=90.28 Aligned_cols=264 Identities=14% Similarity=0.099 Sum_probs=140.3
Q ss_pred CCc-cccceEEcCCCC--EEEEEecCCeEEEEECCCCCCCccceeeeEEecccCc---CCCccceEEEeCC---CCeEEE
Q 020019 43 SSF-FRECAKWDDSGR--RFIVSFLDGGIGQVAVPDDYPPGTVLEEVTLVKDLEL---TGNGSLGLVLDHP---RNRLLV 113 (332)
Q Consensus 43 ~~~-~pegia~d~~g~--~~~~~~~~g~I~~vd~~~~~~~~~~~~~~~~~~~~~~---~~~~~~gi~vd~~---~g~l~v 113 (332)
.++ .|.+|++.++|+ +|++.. .|+|++++.++......+....... ..+. ...++.||+++|+ ++.|||
T Consensus 11 ~gL~~P~~~a~~pdG~~rl~V~er-~G~i~~~~~~g~~~~~~~~~~~~~~-~~g~~~~~e~Gllgia~~P~f~~n~~lYv 88 (463)
T 2wg3_C 11 SGLRQPVGALHSGDGSQRLFILEK-EGYVKILTPEGEIFKEPYLDIHKLV-QSGIKGGDERGLLSLAFHPNYKKNGKLYV 88 (463)
T ss_dssp EEESSEEEEECCSSSSCCEEEEET-TTEEEEECTTSCBCSSCSEECTTTB-CCCCSSSCCCSEEEEEECTTHHHHCEEEE
T ss_pred cCCCCceEEEECCCCCeEEEEEeC-CceEEEEeCCCCeeeeeecCCccee-ccCccccCCCcceeeEeCCCCcCCCEEEE
Confidence 344 899999999985 776664 6999999865432110011100000 0110 0137899999985 589999
Q ss_pred EEeCcCC-------CccceEEEEECCCC--------cEEEEEecCCCCCCCCCccceEECCCCcEEEEe--C--------
Q 020019 114 VAADVFG-------NKYSAVAAYDLSTW--------NRLFLTQLSGPSDGKSCADDVTVDAEGNAYVTD--V-------- 168 (332)
Q Consensus 114 ~~~~~~~-------~~~~~l~~~d~~~g--------~~~~~~~l~~~~~~~~~~ndiavd~dG~lyvtd--~-------- 168 (332)
+...... ....+|.+|....+ +....+++.. ....++...|+++|||.|||+- .
T Consensus 89 ~yt~~~~~~~~~~~~~~~~v~r~~~~~~~~~~~d~~~~~~i~~~~~-~~~~H~g~~l~fgpDG~LYv~~Gd~~~~~~~~~ 167 (463)
T 2wg3_C 89 SYTTNQERWAIGPHDHILRVVEYTVSRKNPHQVDLRTARVFLEVAE-LHRKHLGGQLLFGPDGFLYIILGDGMITLDDME 167 (463)
T ss_dssp EEEECCCSSCSSSSCEEEEEEEEEBCTTCTTSBCGGGCEEEEEEEE-SSSSSCEEEEEECTTSCEEEEECCTTCCHHHHH
T ss_pred EEeCCCCCcccCCcccceEEEEEEEcCCCCCccCCCCceEEEEcCC-CCCcccCCcEeECCCCcEEEEeCCCCCCCCccc
Confidence 8653110 11247888876431 1223333321 2235778899999999999972 1
Q ss_pred -------CCCeEEEEcCCCce-----EEEecCCCCC-----CcccccCccccCeEEEccC-----c--eEEEEeCCC---
Q 020019 169 -------TGSKIWKVGVKGEF-----LSIISSPLFT-----PKEWYKNLVGLNGIVYHPD-----G--FLIVIHTFS--- 221 (332)
Q Consensus 169 -------~~~~I~~v~~~g~~-----~~~~~~~~~~-----~p~~~~~~~~~nGi~~~~d-----G--~Lyva~~~~--- 221 (332)
..|.|+|++++|+. ..-..++-.. ...+..++-+|.|++|+++ | ++|.+|...
T Consensus 168 ~~q~~~~~~GkIlRi~~dg~~~~~~y~iP~dNPf~~~~~~~~eI~a~G~RNp~gla~dp~tg~~~G~l~~~~~D~~G~~~ 247 (463)
T 2wg3_C 168 EMDGLSDFTGSVLRLDVDTDMCNVPYSIPRSNPHFNSTNQPPEVFAHGLHDPGRCAVDRHPTDININLTILCSDSNGKNR 247 (463)
T ss_dssp HCTTCCSCTTEEEEEBCCCCCSSCSCBCCTTSTTTTCSSSCTTEEEECCSSCCBEEEESSCSSTTCSEEEEEECC-----
T ss_pred cccCcCCCCeeEEEEECCCCcccccCcCCCCCCCcCCCCCcccEEEECCCCcceEEECCCCCCcccceEEEecccCCCCC
Confidence 25789999999841 1111121111 1123446778999999997 5 678788621
Q ss_pred --CeEEEEeCCCCCCc-cceeEEEEecCCCCCCCCeEEEeC-------CCeEEEEeCCc-eEEEEcC-CC--ceEEEEEe
Q 020019 222 --GNLFKIDIVDGVGE-GEEIKLIRVAGGPLSFGDGLELLS-------PTKLVVAGNPS-ARLVESS-DG--WETAAVVA 287 (332)
Q Consensus 222 --~~i~~id~~~~~~~-~~~~~~v~~~g~~~~~pdGi~~~~-------dG~l~va~~~~-~~~v~~~-dg--~~~~~~~~ 287 (332)
.+|.++.... ... ..++. ......-..|.||++-. .|.+++++... .+.+... ++ |....+..
T Consensus 248 ~~~ei~~i~~G~-~yG~~~P~~--~~~~~~g~Ap~G~~~Y~G~~fP~~~g~~f~~~~~g~i~~~~~~~~~~~~~~~~~~~ 324 (463)
T 2wg3_C 248 SSARILQIIKGK-DYESEPSLL--EFKPFSNGPLVGGFVYRGCQSERLYGSYVFGDRNGNFLTLQQSPVTKQWQEKPLCL 324 (463)
T ss_dssp -CEEEEEEC-----CCSCCCCE--ECCC----CEEEEEECCCSSCTTTTTCEEEEETTSCEEEEEC-----CCEEEEECE
T ss_pred CCCeEeeeccCC-CCCCCCCeE--EeeCCCCccccceEEEeCCCChhhcceEEEecCCCcEEEEEeCCCCceeeEEEeec
Confidence 2344443221 000 01221 22100013678888842 26688887543 2222222 22 22111211
Q ss_pred e-e---cCCCcccceEEEE-ECCeEEEEEe
Q 020019 288 K-F---SGPVHRLATAATV-KDGRVYLNHM 312 (332)
Q Consensus 288 ~-~---~~~~~~~pt~va~-~~g~lyv~~~ 312 (332)
. . ..+....|..+++ .+|.|||...
T Consensus 325 g~~~~~~~~~~~r~~~v~~~pdG~Lyv~~~ 354 (463)
T 2wg3_C 325 GTSGSCRGYFSGHILGFGEDELGEVYILSS 354 (463)
T ss_dssp EETTSSCSCCCSEEEEEEECTTCCEEEEEE
T ss_pred CCcccccccccCcceEEEECCCCCEEEEec
Confidence 1 0 0122345788888 7899999654
|
| >3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=99.01 E-value=1e-07 Score=97.12 Aligned_cols=231 Identities=11% Similarity=0.041 Sum_probs=139.8
Q ss_pred cceEEcCCCCEEEEEecCCeEEEEECCCCCCCccceeeeEEecc------cCcCCCccceEEEeCCCCeEEEEEeCcCCC
Q 020019 48 ECAKWDDSGRRFIVSFLDGGIGQVAVPDDYPPGTVLEEVTLVKD------LELTGNGSLGLVLDHPRNRLLVVAADVFGN 121 (332)
Q Consensus 48 egia~d~~g~~~~~~~~~g~I~~vd~~~~~~~~~~~~~~~~~~~------~~~~~~~~~gi~vd~~~g~l~v~~~~~~~~ 121 (332)
..+..|++|++|++.. .+.|.++++.+... . .+... ..+....+..|..|++ |+||++..+
T Consensus 316 ~~i~~D~~g~lWigt~-~~Gl~~~~~~~~~~-----~--~~~~~~~~~~~~~l~~~~v~~i~~d~~-g~lWigt~~---- 382 (781)
T 3v9f_A 316 RYIFQDSFNNIWIGTW-GGGINFISNAPPTF-----H--TWSYSPTQMNESSLSNKVVSSVCDDGQ-GKLWIGTDG---- 382 (781)
T ss_dssp EEEEECSSCCEEEEEB-SSCEEEECSSCCSC-----E--EEC----CCCSSCCSSSCEEEEEECTT-SCEEEEEBS----
T ss_pred EEEEEeCCCCEEEEec-CCeEEEeCCCCCcc-----e--eeccCccccccCCCCCcceEEEEEcCC-CCEEEEeCC----
Confidence 4578899999998764 46799998876553 2 22111 1222345788999986 999999742
Q ss_pred ccceEEEEECCCCcEEEEEecCCCCCCCCCccceEECCCCcEEEEeCCCCeEEEEcCCC-ceEEEecCCCCCCcccccCc
Q 020019 122 KYSAVAAYDLSTWNRLFLTQLSGPSDGKSCADDVTVDAEGNAYVTDVTGSKIWKVGVKG-EFLSIISSPLFTPKEWYKNL 200 (332)
Q Consensus 122 ~~~~l~~~d~~~g~~~~~~~l~~~~~~~~~~ndiavd~dG~lyvtd~~~~~I~~v~~~g-~~~~~~~~~~~~~p~~~~~~ 200 (332)
+.|.+||.++++..... .+ ..........++.|++|+||+... .+.|+++++.. +...+. .... ..
T Consensus 383 --~Gl~~~~~~~~~~~~~~-~~-~~~~~~~v~~i~~d~~g~lWigt~-~~Gl~~~~~~~~~~~~~~-~~~~-------~~ 449 (781)
T 3v9f_A 383 --GGINVFENGKRVAIYNK-EN-RELLSNSVLCSLKDSEGNLWFGTY-LGNISYYNTRLKKFQIIE-LEKN-------EL 449 (781)
T ss_dssp --SCEEEEETTEEEEECC-------CCCSBEEEEEECTTSCEEEEET-TEEEEEECSSSCEEEECC-STTT-------CC
T ss_pred --CcEEEEECCCCeEEEcc-CC-CCCCCcceEEEEECCCCCEEEEec-cCCEEEEcCCCCcEEEec-cCCC-------CC
Confidence 45889998765443221 10 011124567889999999999854 36799999874 443322 1111 11
Q ss_pred cccCeEEEccCceEEEEeCCCCeEEEEeCCCCCCccceeEEEEecC-CC--CCCCCeEEEeCCCeEEEEeCCceEEEEcC
Q 020019 201 VGLNGIVYHPDGFLIVIHTFSGNLFKIDIVDGVGEGEEIKLIRVAG-GP--LSFGDGLELLSPTKLVVAGNPSARLVESS 277 (332)
Q Consensus 201 ~~~nGi~~~~dG~Lyva~~~~~~i~~id~~~~~~~~~~~~~v~~~g-~~--~~~pdGi~~~~dG~l~va~~~~~~~v~~~ 277 (332)
.....|+.+++|.||++.. +-|+++++.+++ ...+.... .. ......|+.|++|+||++..........+
T Consensus 450 ~~v~~i~~d~~g~lwigt~--~Gl~~~~~~~~~-----~~~~~~~~~~~~~~~~i~~i~~d~~g~lWigt~~~Gl~~~~~ 522 (781)
T 3v9f_A 450 LDVRVFYEDKNKKIWIGTH--AGVFVIDLASKK-----VIHHYDTSNSQLLENFVRSIAQDSEGRFWIGTFGGGVGIYTP 522 (781)
T ss_dssp CCEEEEEECTTSEEEEEET--TEEEEEESSSSS-----CCEEECTTTSSCSCSCEEEEEECTTCCEEEEESSSCEEEECT
T ss_pred CeEEEEEECCCCCEEEEEC--CceEEEeCCCCe-----EEecccCcccccccceeEEEEEcCCCCEEEEEcCCCEEEEeC
Confidence 2356788999999999976 469999998763 22232210 01 13466889999999999986322333444
Q ss_pred CCceEEEEEeeecCCCc--ccceEEEE-ECCeEEEEEecC
Q 020019 278 DGWETAAVVAKFSGPVH--RLATAATV-KDGRVYLNHMLG 314 (332)
Q Consensus 278 dg~~~~~~~~~~~~~~~--~~pt~va~-~~g~lyv~~~~g 314 (332)
+..+.... .. ...+ ....+++. .+|+||++..-|
T Consensus 523 ~~~~~~~~-~~--~~~l~~~~i~~i~~d~~g~lWi~T~~G 559 (781)
T 3v9f_A 523 DMQLVRKF-NQ--YEGFCSNTINQIYRSSKGQMWLATGEG 559 (781)
T ss_dssp TCCEEEEE-CT--TTTCSCSCEEEEEECTTSCEEEEETTE
T ss_pred CCCeEEEc-cC--CCCCCCCeeEEEEECCCCCEEEEECCC
Confidence 43122111 11 1112 22345666 679999965433
|
| >3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.00 E-value=2.9e-06 Score=76.87 Aligned_cols=223 Identities=11% Similarity=0.122 Sum_probs=144.5
Q ss_pred cccceEEcCCCCEEEEEecCCeEEEEECCCCCCCccceeeeEEecccCcCCCccceEEEeCCCCeEEEEEeCcCCCccce
Q 020019 46 FRECAKWDDSGRRFIVSFLDGGIGQVAVPDDYPPGTVLEEVTLVKDLELTGNGSLGLVLDHPRNRLLVVAADVFGNKYSA 125 (332)
Q Consensus 46 ~pegia~d~~g~~~~~~~~~g~I~~vd~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~vd~~~g~l~v~~~~~~~~~~~~ 125 (332)
....+++.+++.++++...++.|..+|..+++. .. .+...+ .....+++.++ ++.+++.. ..+.
T Consensus 82 ~v~~~~~~~~~~~l~s~s~D~~i~lWd~~~~~~----~~--~~~~~~----~~~~~~~~spd-g~~l~~g~-----~dg~ 145 (321)
T 3ow8_A 82 GVVSVDISHTLPIAASSSLDAHIRLWDLENGKQ----IK--SIDAGP----VDAWTLAFSPD-SQYLATGT-----HVGK 145 (321)
T ss_dssp CEEEEEECSSSSEEEEEETTSEEEEEETTTTEE----EE--EEECCT----TCCCCEEECTT-SSEEEEEC-----TTSE
T ss_pred CEEEEEECCCCCEEEEEeCCCcEEEEECCCCCE----EE--EEeCCC----ccEEEEEECCC-CCEEEEEc-----CCCc
Confidence 445678999998888777789999999877652 11 222111 24568999997 66555543 2467
Q ss_pred EEEEECCCCcEEEEEecCCCCCCCCCccceEECCCCcEEEEeCCCCeEEEEcCC-CceEEEecCCCCCCcccccCccccC
Q 020019 126 VAAYDLSTWNRLFLTQLSGPSDGKSCADDVTVDAEGNAYVTDVTGSKIWKVGVK-GEFLSIISSPLFTPKEWYKNLVGLN 204 (332)
Q Consensus 126 l~~~d~~~g~~~~~~~l~~~~~~~~~~ndiavd~dG~lyvtd~~~~~I~~v~~~-g~~~~~~~~~~~~~p~~~~~~~~~n 204 (332)
+..||.++++....... .......+++.|+|+.+++-+..+.|..+|.. ++....+... ....+
T Consensus 146 v~i~~~~~~~~~~~~~~-----~~~~v~~~~~spdg~~lasg~~dg~i~iwd~~~~~~~~~~~~h----------~~~v~ 210 (321)
T 3ow8_A 146 VNIFGVESGKKEYSLDT-----RGKFILSIAYSPDGKYLASGAIDGIINIFDIATGKLLHTLEGH----------AMPIR 210 (321)
T ss_dssp EEEEETTTCSEEEEEEC-----SSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCC----------SSCCC
T ss_pred EEEEEcCCCceeEEecC-----CCceEEEEEECCCCCEEEEEcCCCeEEEEECCCCcEEEEEccc----------CCcee
Confidence 88999998877654432 12456789999999988888888999999875 4544333211 12357
Q ss_pred eEEEccCceEEEEeCCCCeEEEEeCCCCCCccceeEEEEecCCCCCCCCeEEEeCCCeEEEEeC--CceEEEEcCCCceE
Q 020019 205 GIVYHPDGFLIVIHTFSGNLFKIDIVDGVGEGEEIKLIRVAGGPLSFGDGLELLSPTKLVVAGN--PSARLVESSDGWET 282 (332)
Q Consensus 205 Gi~~~~dG~Lyva~~~~~~i~~id~~~~~~~~~~~~~v~~~g~~~~~pdGi~~~~dG~l~va~~--~~~~~v~~~dg~~~ 282 (332)
.++|+|||.++++-...+.|..++..+++ ....+. + .......+++.++|+++++.. ...++-....+
T Consensus 211 ~l~~spd~~~l~s~s~dg~i~iwd~~~~~----~~~~~~--~-h~~~v~~~~~sp~~~~l~s~s~D~~v~iwd~~~~--- 280 (321)
T 3ow8_A 211 SLTFSPDSQLLVTASDDGYIKIYDVQHAN----LAGTLS--G-HASWVLNVAFCPDDTHFVSSSSDKSVKVWDVGTR--- 280 (321)
T ss_dssp EEEECTTSCEEEEECTTSCEEEEETTTCC----EEEEEC--C-CSSCEEEEEECTTSSEEEEEETTSCEEEEETTTT---
T ss_pred EEEEcCCCCEEEEEcCCCeEEEEECCCcc----eeEEEc--C-CCCceEEEEECCCCCEEEEEeCCCcEEEEeCCCC---
Confidence 89999999666666778889889988662 333332 1 224456899999988777753 33444455556
Q ss_pred EEEEeeecCCCcccceEEEE-ECCeEEEEE
Q 020019 283 AAVVAKFSGPVHRLATAATV-KDGRVYLNH 311 (332)
Q Consensus 283 ~~~~~~~~~~~~~~pt~va~-~~g~lyv~~ 311 (332)
+....+..- .....++++ .+++..++.
T Consensus 281 -~~~~~~~~h-~~~v~~v~~s~~g~~l~s~ 308 (321)
T 3ow8_A 281 -TCVHTFFDH-QDQVWGVKYNGNGSKIVSV 308 (321)
T ss_dssp -EEEEEECCC-SSCEEEEEECTTSSEEEEE
T ss_pred -EEEEEEcCC-CCcEEEEEECCCCCEEEEE
Confidence 233333211 223467888 555555543
|
| >1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A | Back alignment and structure |
|---|
Probab=98.97 E-value=3e-06 Score=75.68 Aligned_cols=208 Identities=11% Similarity=0.093 Sum_probs=129.6
Q ss_pred EEecCCccccceEEcCCCCEEEEEecCCeEEEEECCCCCCCccceeeeEEecccCcCCCccceEEEeCCCCeEEEEEeCc
Q 020019 39 HYHSSSFFRECAKWDDSGRRFIVSFLDGGIGQVAVPDDYPPGTVLEEVTLVKDLELTGNGSLGLVLDHPRNRLLVVAADV 118 (332)
Q Consensus 39 ~~~~~~~~pegia~d~~g~~~~~~~~~g~I~~vd~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~vd~~~g~l~v~~~~~ 118 (332)
...........++++++++++++.. ++.|..++..+++.. .......... .......++++++ ++++++...
T Consensus 46 ~~~~h~~~v~~~~~~~~~~~l~~~~-dg~i~iw~~~~~~~~----~~~~~~~~~~-~~~~v~~~~~~~~-~~~l~~~~~- 117 (337)
T 1gxr_A 46 NTLNHGEVVCAVTISNPTRHVYTGG-KGCVKVWDISHPGNK----SPVSQLDCLN-RDNYIRSCKLLPD-GCTLIVGGE- 117 (337)
T ss_dssp EEECCSSCCCEEEECSSSSEEEEEC-BSEEEEEETTSTTCC----SCSEEEECSC-TTSBEEEEEECTT-SSEEEEEES-
T ss_pred eeccCCCceEEEEEecCCcEEEEcC-CCeEEEEECCCCCce----eeeecccccC-CCCcEEEEEEcCC-CCEEEEEcC-
Confidence 3334444567899999999887776 899999998765421 1001111001 1125788999997 554444321
Q ss_pred CCCccceEEEEECCCCcEEEEEecCCCCCCCCCccceEECCCCcEEEEeCCCCeEEEEcCC-CceEEEecCCCCCCcccc
Q 020019 119 FGNKYSAVAAYDLSTWNRLFLTQLSGPSDGKSCADDVTVDAEGNAYVTDVTGSKIWKVGVK-GEFLSIISSPLFTPKEWY 197 (332)
Q Consensus 119 ~~~~~~~l~~~d~~~g~~~~~~~l~~~~~~~~~~ndiavd~dG~lyvtd~~~~~I~~v~~~-g~~~~~~~~~~~~~p~~~ 197 (332)
.+.+..||.++++......+.. .......+++.++|+.+++-...+.|..++.. ++....+..
T Consensus 118 ----d~~i~~~d~~~~~~~~~~~~~~---~~~~i~~~~~~~~~~~l~~~~~dg~v~~~d~~~~~~~~~~~~--------- 181 (337)
T 1gxr_A 118 ----ASTLSIWDLAAPTPRIKAELTS---SAPACYALAISPDSKVCFSCCSDGNIAVWDLHNQTLVRQFQG--------- 181 (337)
T ss_dssp ----SSEEEEEECCCC--EEEEEEEC---SSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECC---------
T ss_pred ----CCcEEEEECCCCCcceeeeccc---CCCceEEEEECCCCCEEEEEeCCCcEEEEeCCCCceeeeeec---------
Confidence 3578999998877444344421 13456789999999877777778889999876 443333221
Q ss_pred cCccccCeEEEccCceEEEEeCCCCeEEEEeCCCCCCccceeEEEEecCCCCCCCCeEEEeCCCeEEEEe--CCceEEEE
Q 020019 198 KNLVGLNGIVYHPDGFLIVIHTFSGNLFKIDIVDGVGEGEEIKLIRVAGGPLSFGDGLELLSPTKLVVAG--NPSARLVE 275 (332)
Q Consensus 198 ~~~~~~nGi~~~~dG~Lyva~~~~~~i~~id~~~~~~~~~~~~~v~~~g~~~~~pdGi~~~~dG~l~va~--~~~~~~v~ 275 (332)
.......++++|+|..+++-...+.|..+++.++ +.+..+... .....+++.++|+++++. .....+..
T Consensus 182 -~~~~i~~~~~~~~~~~l~~~~~dg~i~~~d~~~~----~~~~~~~~~----~~v~~~~~s~~~~~l~~~~~~~~i~~~~ 252 (337)
T 1gxr_A 182 -HTDGASCIDISNDGTKLWTGGLDNTVRSWDLREG----RQLQQHDFT----SQIFSLGYCPTGEWLAVGMESSNVEVLH 252 (337)
T ss_dssp -CSSCEEEEEECTTSSEEEEEETTSEEEEEETTTT----EEEEEEECS----SCEEEEEECTTSSEEEEEETTSCEEEEE
T ss_pred -ccCceEEEEECCCCCEEEEEecCCcEEEEECCCC----ceEeeecCC----CceEEEEECCCCCEEEEEcCCCcEEEEE
Confidence 1124578999999944444556788999999876 234444332 345688999998866664 23344444
Q ss_pred cCCC
Q 020019 276 SSDG 279 (332)
Q Consensus 276 ~~dg 279 (332)
...+
T Consensus 253 ~~~~ 256 (337)
T 1gxr_A 253 VNKP 256 (337)
T ss_dssp TTSS
T ss_pred CCCC
Confidence 4544
|
| >1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A | Back alignment and structure |
|---|
Probab=98.97 E-value=2.2e-08 Score=97.82 Aligned_cols=207 Identities=10% Similarity=-0.052 Sum_probs=130.1
Q ss_pred CccccceEE-c-CCCCEEEEEe------------------cCCeEEEEECCCCCCCccceeeeEEecccCcCCCccceEE
Q 020019 44 SFFRECAKW-D-DSGRRFIVSF------------------LDGGIGQVAVPDDYPPGTVLEEVTLVKDLELTGNGSLGLV 103 (332)
Q Consensus 44 ~~~pegia~-d-~~g~~~~~~~------------------~~g~I~~vd~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~ 103 (332)
+..|+|+++ . |+++.+|++- ..+.+..||.++.+ +.. ++. .. ..|.+++
T Consensus 133 g~~phg~~~~~~p~~~~v~~~~~~~~p~~~dg~~l~~~~~~~~~vtvID~~t~~----v~~--qI~----Vg-g~pd~~~ 201 (595)
T 1fwx_A 133 AKGIHGLRPQKWPRSNYVFCNGEDETPLVNDGTNMEDVANYVNVFTAVDADKWE----VAW--QVL----VS-GNLDNCD 201 (595)
T ss_dssp CCSEEEEEECCSSBCSEEEEEECSCEESSCSSSSTTCGGGEEEEEEEEETTTTE----EEE--EEE----ES-SCCCCEE
T ss_pred CCCCcceeeeecCCCcEEEEecccccccCCCCcccccccccCceEEEEECCCCe----EEE--EEE----eC-CCccceE
Confidence 457999998 4 7887666651 23478999987654 222 121 11 2688999
Q ss_pred EeCCCCeEEEEEeCcCC--------------------------------CccceEEEEECCC--CcE-EEEEecCCCCCC
Q 020019 104 LDHPRNRLLVVAADVFG--------------------------------NKYSAVAAYDLST--WNR-LFLTQLSGPSDG 148 (332)
Q Consensus 104 vd~~~g~l~v~~~~~~~--------------------------------~~~~~l~~~d~~~--g~~-~~~~~l~~~~~~ 148 (332)
++++.+.+|+++.+... ...+.+.++|.++ ++. ...++.
T Consensus 202 ~spdGk~~~vt~~~se~~~~i~~~~~~~~d~v~V~~~~~~~~~v~~Gk~~~i~~V~VID~~~~~~~~~~~~Ipv------ 275 (595)
T 1fwx_A 202 ADYEGKWAFSTSYNSEKGMTLPEMTAAEMDHIVVFNIAEIEKAIAAGDYQELNGVKVVDGRKEASSLFTRYIPI------ 275 (595)
T ss_dssp ECSSSSEEEEEESCTTCCSSHHHHTCCSEEEEEEEEHHHHHHHHHHTCSEEETTEEEEECSGGGCCSSEEEEEE------
T ss_pred ECCCCCEEEEEecCcccCcchhhccccccceEEEeeccceeEeccCCCeeEECcEEEEeCcccCCceeEEEEec------
Confidence 99986678888743200 0023477888877 444 444444
Q ss_pred CCCccceEECCCCc-EEEEeCCCCeEEEEcCCCceEEEec--CCCCCCcccccCccccCeEEEccCceEEEEeCCCCeEE
Q 020019 149 KSCADDVTVDAEGN-AYVTDVTGSKIWKVGVKGEFLSIIS--SPLFTPKEWYKNLVGLNGIVYHPDGFLIVIHTFSGNLF 225 (332)
Q Consensus 149 ~~~~ndiavd~dG~-lyvtd~~~~~I~~v~~~g~~~~~~~--~~~~~~p~~~~~~~~~nGi~~~~dG~Lyva~~~~~~i~ 225 (332)
...|+++.++|||+ +|+++...+.|..+|.+.....+-. .+....-...+...+|.+++|++||++|++...+++|.
T Consensus 276 g~~PhGv~~sPDGk~v~V~~~~s~~VsVid~~~~~~~~~~~l~~~~~v~~~v~vG~gP~h~aF~~dG~aY~t~~ldsqV~ 355 (595)
T 1fwx_A 276 ANNPHGCNMAPDKKHLCVAGKLSPTVTVLDVTRFDAVFYENADPRSAVVAEPELGLGPLHTAFDGRGNAYTSLFLDSQVV 355 (595)
T ss_dssp ESSCCCEEECTTSSEEEEECTTSSBEEEEEGGGHHHHHHSCCCGGGGEEECCBCCSCEEEEEECTTSEEEEEETTTTEEE
T ss_pred CCCceEEEEcCCCCEEEEeCCCCCeEEEEECcccccccccccCcccceEEEcCCCCCcceEEECCCCeEEEEEecCCcEE
Confidence 24789999999996 9999999999999997622100000 00000000012346789999999999999999999999
Q ss_pred EEeCCCCC------CccceeEEEEecCCC--CCCCCeEEEeCCCe-EEEEe
Q 020019 226 KIDIVDGV------GEGEEIKLIRVAGGP--LSFGDGLELLSPTK-LVVAG 267 (332)
Q Consensus 226 ~id~~~~~------~~~~~~~~v~~~g~~--~~~pdGi~~~~dG~-l~va~ 267 (332)
+++.++.. -..+.+..+.+.-++ .....|+++++||+ ||+++
T Consensus 356 kwdi~~a~~~~~g~~~~~vi~kidV~yqpGh~~~~~g~t~~~DGk~l~~~N 406 (595)
T 1fwx_A 356 KWNIEDAIRAYAGEKVDPIKDKLDVHYQPGHLKTVMGETLDATNDWLVCLS 406 (595)
T ss_dssp EEEHHHHHHHHHTCSCCCEEEEEECSSCEEEEEETTTTSTTCCSSEEEEEE
T ss_pred EEEhhHhhhhhcccccceeEEEeecccccccceeccceEeCCCCCEEEEcC
Confidence 99987510 001245555543111 22346778889988 45555
|
| >3q6k_A 43.2 kDa salivary protein; beta propeller, binding protein, serotonin, salivary gland, binding, ligand binging protein; HET: CIT SRO; 2.52A {Lutzomyia longipalpis} PDB: 3q6p_A* 3q6t_A* | Back alignment and structure |
|---|
Probab=98.97 E-value=1.5e-07 Score=87.64 Aligned_cols=206 Identities=13% Similarity=0.065 Sum_probs=132.9
Q ss_pred cccceEEcCCCCEEEEEec---------------CCeEEEEECCCC--CCCccceeeeEEecccCcCCCccceEEEe-C-
Q 020019 46 FRECAKWDDSGRRFIVSFL---------------DGGIGQVAVPDD--YPPGTVLEEVTLVKDLELTGNGSLGLVLD-H- 106 (332)
Q Consensus 46 ~pegia~d~~g~~~~~~~~---------------~g~I~~vd~~~~--~~~~~~~~~~~~~~~~~~~~~~~~gi~vd-~- 106 (332)
...++.+|+.+++|+.+.. ..+|..+|+.+. + ++.+..+..+.-..+...+.|++| .
T Consensus 88 sV~~v~iD~~~rLWVLDtG~~~~~~~~~~~~~~~~pkLv~~DL~t~~~~----li~~y~~p~~~~~~~S~l~di~VD~~~ 163 (381)
T 3q6k_A 88 SIYQPVIDDCRRLWVVDIGSVEYRSRGAKDYPSHRPAIVAYDLKQPNYP----EVVRYYFPTRLVEKPTYFGGFAVDVAN 163 (381)
T ss_dssp CEEEEEECTTCEEEEEECSSCSSCSTTGGGSCCCCCEEEEEESSSTTCC----EEEEEECCGGGCCCGGGEEEEEEEESC
T ss_pred EeeEEEEcCCCcEEEEeCCCcCcCCCccccCCCCCceEEEEECCCCCce----eEEEEECCHHhcccCCccceEEEeccc
Confidence 6678999999999998821 126999999987 5 233222221100111256899999 2
Q ss_pred -C----CCeEEEEEeCcCCCccceEEEEECCCCcEEEEEec-CCCCC-------C-----CCCccceEECCC----C-cE
Q 020019 107 -P----RNRLLVVAADVFGNKYSAVAAYDLSTWNRLFLTQL-SGPSD-------G-----KSCADDVTVDAE----G-NA 163 (332)
Q Consensus 107 -~----~g~l~v~~~~~~~~~~~~l~~~d~~~g~~~~~~~l-~~~~~-------~-----~~~~ndiavd~d----G-~l 163 (332)
. ++.+|++|.. ...|.+||+++++..+...- -.|.. + .....+|+++|+ + .|
T Consensus 164 ~~~~c~~~~aYItD~~-----~~gLIVydl~~~~swRv~~~~~~pd~~~~~~i~G~~~~~~~Gi~gIaLsp~~~~~~~~L 238 (381)
T 3q6k_A 164 PKGDCSETFVYITNFL-----RGALFIYDHKKQDSWNVTHPTFKAERPTKFDYGGKEYEFKAGIFGITLGDRDSEGNRPA 238 (381)
T ss_dssp TTTTSCSEEEEEEETT-----TTEEEEEETTTTEEEEEECGGGSCCSCEEEEETTEEEEECCCEEEEEECCCCTTSCCEE
T ss_pred CCCCCCccEEEEEcCC-----CCcEEEEECCCCcEEEEccCCCccccCcceEECCEEeEeccCceEEEecCCcCCCCeEE
Confidence 1 4789999864 45799999999876554320 00110 1 136778999987 5 49
Q ss_pred EEEeCCCCeEEEEcCC----Cce---EEEecCCCCCCcccccCccccCeEEEc-cCceEEEEeCCCCeEEEEeCCCCCCc
Q 020019 164 YVTDVTGSKIWKVGVK----GEF---LSIISSPLFTPKEWYKNLVGLNGIVYH-PDGFLIVIHTFSGNLFKIDIVDGVGE 235 (332)
Q Consensus 164 yvtd~~~~~I~~v~~~----g~~---~~~~~~~~~~~p~~~~~~~~~nGi~~~-~dG~Lyva~~~~~~i~~id~~~~~~~ 235 (332)
|+.--....+|++... ... ...+.... | .....++++| .+|.||+++...+.|.++++.+....
T Consensus 239 Yf~plss~~ly~V~T~~L~~~~~~~~v~~~G~kg---~-----~s~~~~~~~D~~~G~ly~~~~~~~aI~~w~~~~~~~~ 310 (381)
T 3q6k_A 239 YYLAGSAIKVYSVNTKELKQKGGKLNPELLGNRG---K-----YNDAIALAYDPKTKVIFFAEANTKQVSCWNTQKMPLR 310 (381)
T ss_dssp EEEESSCSEEEEEEHHHHSSTTCCCCCEEEEECC---T-----TCCEEEEEECTTTCEEEEEESSSSEEEEEETTSCSBC
T ss_pred EEEECCCCcEEEEEHHHhhCcchhhceEEeeecC---C-----CCCcceEEEeCCCCeEEEEeccCCeEEEEeCCCCccc
Confidence 9998888899998732 111 01111100 0 0122356776 67899999999999999998861111
Q ss_pred cceeEEEEecCCCCCCCCeEEEeCCCeEEEEeCC
Q 020019 236 GEEIKLIRVAGGPLSFGDGLELLSPTKLVVAGNP 269 (332)
Q Consensus 236 ~~~~~~v~~~g~~~~~pdGi~~~~dG~l~va~~~ 269 (332)
......+... ..+..||+|.++.+|.||+..|+
T Consensus 311 ~~n~~~l~~d-~~l~~pd~~~i~~~g~Lwv~sn~ 343 (381)
T 3q6k_A 311 MKNTDVVYTS-SRFVFGTDISVDSKGGLWFMSNG 343 (381)
T ss_dssp GGGEEEEEEC-TTCCSEEEEEECTTSCEEEEECS
T ss_pred cCceEEEEEC-CCccccCeEEECCCCeEEEEECc
Confidence 1134445444 36778999999999999999765
|
| >3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.95 E-value=3.4e-06 Score=76.30 Aligned_cols=217 Identities=12% Similarity=0.071 Sum_probs=135.0
Q ss_pred ceeEEEecCCccccceEEcCCCCEEEEEecCCeEEEEECCCCCCCccceeeeEEecccCcCCCccceEEEeCCCCeEEEE
Q 020019 35 THVYHYHSSSFFRECAKWDDSGRRFIVSFLDGGIGQVAVPDDYPPGTVLEEVTLVKDLELTGNGSLGLVLDHPRNRLLVV 114 (332)
Q Consensus 35 ~~~i~~~~~~~~pegia~d~~g~~~~~~~~~g~I~~vd~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~vd~~~g~l~v~ 114 (332)
...+.+.+.......++++++|+++++...++.|..++..+++. .. .+... ......++++++ ++++++
T Consensus 23 ~~~~~l~~h~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~----~~--~~~~h----~~~v~~~~~~~~-~~~l~s 91 (369)
T 3zwl_B 23 MKAIKLTGHERPLTQVKYNKEGDLLFSCSKDSSASVWYSLNGER----LG--TLDGH----TGTIWSIDVDCF-TKYCVT 91 (369)
T ss_dssp EEEEEEECCSSCEEEEEECTTSCEEEEEESSSCEEEEETTTCCE----EE--EECCC----SSCEEEEEECTT-SSEEEE
T ss_pred cccEEEEEeeceEEEEEEcCCCCEEEEEeCCCEEEEEeCCCchh----hh--hhhhc----CCcEEEEEEcCC-CCEEEE
Confidence 34566777666778899999999888877789999999876652 11 22211 125688999996 654444
Q ss_pred EeCcCCCccceEEEEECCCCcEEEEEecCCCCCCCCCccceEECCCCcEEEEeCCC-----CeEEEEcCCCc--e--EEE
Q 020019 115 AADVFGNKYSAVAAYDLSTWNRLFLTQLSGPSDGKSCADDVTVDAEGNAYVTDVTG-----SKIWKVGVKGE--F--LSI 185 (332)
Q Consensus 115 ~~~~~~~~~~~l~~~d~~~g~~~~~~~l~~~~~~~~~~ndiavd~dG~lyvtd~~~-----~~I~~v~~~g~--~--~~~ 185 (332)
... .+.|..||.++++....... ......+++.++|+.+++.... +.|..++.... . ...
T Consensus 92 ~~~-----dg~i~iwd~~~~~~~~~~~~------~~~v~~~~~~~~~~~l~~~~~~~~~~~g~i~~~d~~~~~~~~~~~~ 160 (369)
T 3zwl_B 92 GSA-----DYSIKLWDVSNGQCVATWKS------PVPVKRVEFSPCGNYFLAILDNVMKNPGSINIYEIERDSATHELTK 160 (369)
T ss_dssp EET-----TTEEEEEETTTCCEEEEEEC------SSCEEEEEECTTSSEEEEEECCBTTBCCEEEEEEEEECTTTCCEEE
T ss_pred EeC-----CCeEEEEECCCCcEEEEeec------CCCeEEEEEccCCCEEEEecCCccCCCCEEEEEEecCCccceeecc
Confidence 332 45799999999887766553 2456789999999876665555 77777765411 1 111
Q ss_pred ecCCCCCCcccccCccccCeEEEccCceEEEEeCCCCeEEEEeCCCCCCccceeEEEEecCCCCCCCCeEEEeCCCeEEE
Q 020019 186 ISSPLFTPKEWYKNLVGLNGIVYHPDGFLIVIHTFSGNLFKIDIVDGVGEGEEIKLIRVAGGPLSFGDGLELLSPTKLVV 265 (332)
Q Consensus 186 ~~~~~~~~p~~~~~~~~~nGi~~~~dG~Lyva~~~~~~i~~id~~~~~~~~~~~~~v~~~g~~~~~pdGi~~~~dG~l~v 265 (332)
........-...........++++++|.++++-...+.|..+++.+.. ..+..+.. .......+++.++|++++
T Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~---~~~~~~~~---~~~~v~~~~~~~~~~~l~ 234 (369)
T 3zwl_B 161 VSEEPIHKIITHEGLDAATVAGWSTKGKYIIAGHKDGKISKYDVSNNY---EYVDSIDL---HEKSISDMQFSPDLTYFI 234 (369)
T ss_dssp ECSSCSEEEECCTTCCCEEEEEECGGGCEEEEEETTSEEEEEETTTTT---EEEEEEEC---CSSCEEEEEECTTSSEEE
T ss_pred cccceeeeccCCcCccceeEEEEcCCCCEEEEEcCCCEEEEEECCCCc---EeEEEEec---CCCceeEEEECCCCCEEE
Confidence 100000000000112256789999999444444567889999998731 23443432 224567899999988666
Q ss_pred Ee-C-CceEEEEcCCC
Q 020019 266 AG-N-PSARLVESSDG 279 (332)
Q Consensus 266 a~-~-~~~~~v~~~dg 279 (332)
+. . ...++....++
T Consensus 235 ~~~~d~~i~v~d~~~~ 250 (369)
T 3zwl_B 235 TSSRDTNSFLVDVSTL 250 (369)
T ss_dssp EEETTSEEEEEETTTC
T ss_pred EecCCceEEEEECCCC
Confidence 64 3 33444455555
|
| >1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B* | Back alignment and structure |
|---|
Probab=98.90 E-value=8.1e-06 Score=74.32 Aligned_cols=228 Identities=12% Similarity=0.103 Sum_probs=139.6
Q ss_pred cccceEEcCCCCEEEEEecCCeEEEEECCCCCCCccceeeeEEecccCcCCCccceEEEeCCCCeEEEEEeCcCCCccce
Q 020019 46 FRECAKWDDSGRRFIVSFLDGGIGQVAVPDDYPPGTVLEEVTLVKDLELTGNGSLGLVLDHPRNRLLVVAADVFGNKYSA 125 (332)
Q Consensus 46 ~pegia~d~~g~~~~~~~~~g~I~~vd~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~vd~~~g~l~v~~~~~~~~~~~~ 125 (332)
....++++++|+.+++...++.|..++..+.+.. ......+.... .....+.+.++ +.++.+.. .+.
T Consensus 99 ~v~~~~~s~~~~~l~s~~~d~~v~iw~~~~~~~~--~~~~~~~~~h~----~~v~~~~~~~~-~~l~s~s~------d~~ 165 (340)
T 1got_B 99 WVMTCAYAPSGNYVACGGLDNICSIYNLKTREGN--VRVSRELAGHT----GYLSCCRFLDD-NQIVTSSG------DTT 165 (340)
T ss_dssp CEEEEEECTTSSEEEEEETTCEEEEEETTTCSBS--CEEEEEEECCS----SCEEEEEEEET-TEEEEEET------TSC
T ss_pred cEEEEEECCCCCEEEEEeCCCeEEEEECccCCCc--ceeEEEecCCC----ccEEEEEECCC-CcEEEEEC------CCc
Confidence 3456889999998877777899988887654310 00000121111 24567777775 77666554 356
Q ss_pred EEEEECCCCcEEEEEecCCCCCCCCCccceEECCCCcEEEEeCCCCeEEEEcCC-CceEEEecCCCCCCcccccCccccC
Q 020019 126 VAAYDLSTWNRLFLTQLSGPSDGKSCADDVTVDAEGNAYVTDVTGSKIWKVGVK-GEFLSIISSPLFTPKEWYKNLVGLN 204 (332)
Q Consensus 126 l~~~d~~~g~~~~~~~l~~~~~~~~~~ndiavd~dG~lyvtd~~~~~I~~v~~~-g~~~~~~~~~~~~~p~~~~~~~~~n 204 (332)
+..||.++++....+. +. ......+++.|+|+++++-+..+.|..+|.. ++....+.. .....+
T Consensus 166 i~~wd~~~~~~~~~~~--~h---~~~v~~~~~~~~~~~l~sg~~d~~v~~wd~~~~~~~~~~~~----------h~~~v~ 230 (340)
T 1got_B 166 CALWDIETGQQTTTFT--GH---TGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTG----------HESDIN 230 (340)
T ss_dssp EEEEETTTTEEEEEEC--CC---SSCEEEEEECTTSSEEEEEETTSCEEEEETTTCSEEEEECC----------CSSCEE
T ss_pred EEEEECCCCcEEEEEc--CC---CCceEEEEECCCCCEEEEEeCCCcEEEEECCCCeeEEEEcC----------CcCCEE
Confidence 8899999887654432 11 2456789999999999998888988888865 443332211 112467
Q ss_pred eEEEccCceEEEEeCCCCeEEEEeCCCCCCccceeEEEEecCCCCCCCCeEEEeCCCeEEEEeCC--ceEEEEcCCCceE
Q 020019 205 GIVYHPDGFLIVIHTFSGNLFKIDIVDGVGEGEEIKLIRVAGGPLSFGDGLELLSPTKLVVAGNP--SARLVESSDGWET 282 (332)
Q Consensus 205 Gi~~~~dG~Lyva~~~~~~i~~id~~~~~~~~~~~~~v~~~g~~~~~pdGi~~~~dG~l~va~~~--~~~~v~~~dg~~~ 282 (332)
.++++|+|.++++-...+.|..+|+.++ +.+..+... ........+++.++|+++++... ..++-....+...
T Consensus 231 ~v~~~p~~~~l~s~s~d~~v~iwd~~~~----~~~~~~~~~-~~~~~v~~~~~s~~g~~l~~g~~d~~i~vwd~~~~~~~ 305 (340)
T 1got_B 231 AICFFPNGNAFATGSDDATCRLFDLRAD----QELMTYSHD-NIICGITSVSFSKSGRLLLAGYDDFNCNVWDALKADRA 305 (340)
T ss_dssp EEEECTTSSEEEEEETTSCEEEEETTTT----EEEEEECCT-TCCSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEE
T ss_pred EEEEcCCCCEEEEEcCCCcEEEEECCCC----cEEEEEccC-CcccceEEEEECCCCCEEEEECCCCeEEEEEcccCcEe
Confidence 8999999966666667888988998865 233333322 11234567899999998888633 3333344445222
Q ss_pred EEEEeeecCCCcccceEEEE-ECCeEEEEE
Q 020019 283 AAVVAKFSGPVHRLATAATV-KDGRVYLNH 311 (332)
Q Consensus 283 ~~~~~~~~~~~~~~pt~va~-~~g~lyv~~ 311 (332)
..+.+ .-...+++++ .++++.++.
T Consensus 306 ----~~~~~-h~~~v~~~~~s~dg~~l~s~ 330 (340)
T 1got_B 306 ----GVLAG-HDNRVSCLGVTDDGMAVATG 330 (340)
T ss_dssp ----EEEEC-CSSCEEEEEECTTSSCEEEE
T ss_pred ----eEeec-CCCcEEEEEEcCCCCEEEEE
Confidence 22221 1123467888 566555543
|
| >4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ... | Back alignment and structure |
|---|
Probab=98.88 E-value=9.7e-06 Score=72.37 Aligned_cols=205 Identities=18% Similarity=0.146 Sum_probs=133.6
Q ss_pred EEEecCCccccceEEcCCCCEEEEEecCCeEEEEECCCCCCCccceeeeEEecccCcCCCccceEEEeCCCCeEEEEEeC
Q 020019 38 YHYHSSSFFRECAKWDDSGRRFIVSFLDGGIGQVAVPDDYPPGTVLEEVTLVKDLELTGNGSLGLVLDHPRNRLLVVAAD 117 (332)
Q Consensus 38 i~~~~~~~~pegia~d~~g~~~~~~~~~g~I~~vd~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~vd~~~g~l~v~~~~ 117 (332)
..+.+.......++++++|+++++...++.|..++..+++. .. .+... ......++++++ ++++++...
T Consensus 17 ~~~~gh~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~~----~~--~~~~h----~~~v~~~~~~~~-~~~l~s~~~ 85 (312)
T 4ery_A 17 FTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKF----EK--TISGH----KLGISDVAWSSD-SNLLVSASD 85 (312)
T ss_dssp EEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCE----EE--EECCC----SSCEEEEEECTT-SSEEEEEET
T ss_pred EEEcccCCcEEEEEECCCCCEEEEeeCCCeEEEEeCCCccc----ch--hhccC----CCceEEEEEcCC-CCEEEEECC
Confidence 34444444567899999999888777789999999876652 11 22111 125688999997 665554432
Q ss_pred cCCCccceEEEEECCCCcEEEEEecCCCCCCCCCccceEECCCCcEEEEeCCCCeEEEEcCC-CceEEEecCCCCCCccc
Q 020019 118 VFGNKYSAVAAYDLSTWNRLFLTQLSGPSDGKSCADDVTVDAEGNAYVTDVTGSKIWKVGVK-GEFLSIISSPLFTPKEW 196 (332)
Q Consensus 118 ~~~~~~~~l~~~d~~~g~~~~~~~l~~~~~~~~~~ndiavd~dG~lyvtd~~~~~I~~v~~~-g~~~~~~~~~~~~~p~~ 196 (332)
.+.+.+||.++++......- .......+++.|+++++++-...+.|..+|.. ++....+...
T Consensus 86 -----d~~i~vwd~~~~~~~~~~~~-----~~~~v~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~------- 148 (312)
T 4ery_A 86 -----DKTLKIWDVSSGKCLKTLKG-----HSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAH------- 148 (312)
T ss_dssp -----TSEEEEEETTTCCEEEEEEC-----CSSCEEEEEECSSSSEEEEEETTSCEEEEETTTCCEEEEECCC-------
T ss_pred -----CCEEEEEECCCCcEEEEEcC-----CCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCEEEEEecCC-------
Confidence 35788999998887654432 12456779999999988888888889888876 4443332211
Q ss_pred ccCccccCeEEEccCceEEEEeCCCCeEEEEeCCCCCCccceeEEEEecCCCCCCCCeEEEeCCCeEEEEeC--CceEEE
Q 020019 197 YKNLVGLNGIVYHPDGFLIVIHTFSGNLFKIDIVDGVGEGEEIKLIRVAGGPLSFGDGLELLSPTKLVVAGN--PSARLV 274 (332)
Q Consensus 197 ~~~~~~~nGi~~~~dG~Lyva~~~~~~i~~id~~~~~~~~~~~~~v~~~g~~~~~pdGi~~~~dG~l~va~~--~~~~~v 274 (332)
......++++++|.++++-...+.|..+++.+++ .+..+... .......++++++|+.+++.. +..++.
T Consensus 149 ---~~~v~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~----~~~~~~~~--~~~~~~~~~~~~~~~~l~~~~~d~~i~iw 219 (312)
T 4ery_A 149 ---SDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQ----CLKTLIDD--DNPPVSFVKFSPNGKYILAATLDNTLKLW 219 (312)
T ss_dssp ---SSCEEEEEECTTSSEEEEEETTSCEEEEETTTCC----EEEEECCS--SCCCEEEEEECTTSSEEEEEETTTEEEEE
T ss_pred ---CCcEEEEEEcCCCCEEEEEeCCCcEEEEECCCCc----eeeEEecc--CCCceEEEEECCCCCEEEEEcCCCeEEEE
Confidence 1235689999999555555667889889988762 33333221 222345688999988777652 334444
Q ss_pred EcCCC
Q 020019 275 ESSDG 279 (332)
Q Consensus 275 ~~~dg 279 (332)
....+
T Consensus 220 d~~~~ 224 (312)
T 4ery_A 220 DYSKG 224 (312)
T ss_dssp ETTTT
T ss_pred ECCCC
Confidence 55555
|
| >3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.84 E-value=5e-06 Score=75.34 Aligned_cols=184 Identities=13% Similarity=0.060 Sum_probs=125.0
Q ss_pred cccceEEcCCCCEEEEEecCCeEEEEECCCCCCCccceeeeEEecccCcCCCccceEEEeCCCCeEEEEEeCcCCCccce
Q 020019 46 FRECAKWDDSGRRFIVSFLDGGIGQVAVPDDYPPGTVLEEVTLVKDLELTGNGSLGLVLDHPRNRLLVVAADVFGNKYSA 125 (332)
Q Consensus 46 ~pegia~d~~g~~~~~~~~~g~I~~vd~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~vd~~~g~l~v~~~~~~~~~~~~ 125 (332)
....++++++|+.+++...++.|..++..+++. . ..+.. .+.....++++++ ++++++... .+.
T Consensus 124 ~~~~~~~spdg~~l~~g~~dg~v~i~~~~~~~~-----~-~~~~~----~~~~v~~~~~spd-g~~lasg~~-----dg~ 187 (321)
T 3ow8_A 124 DAWTLAFSPDSQYLATGTHVGKVNIFGVESGKK-----E-YSLDT----RGKFILSIAYSPD-GKYLASGAI-----DGI 187 (321)
T ss_dssp CCCCEEECTTSSEEEEECTTSEEEEEETTTCSE-----E-EEEEC----SSSCEEEEEECTT-SSEEEEEET-----TSC
T ss_pred cEEEEEECCCCCEEEEEcCCCcEEEEEcCCCce-----e-EEecC----CCceEEEEEECCC-CCEEEEEcC-----CCe
Confidence 445789999999888887789999999876652 1 12221 1125678999997 665554432 356
Q ss_pred EEEEECCCCcEEEEEecCCCCCCCCCccceEECCCCcEEEEeCCCCeEEEEcCC-CceEEEecCCCCCCcccccCccccC
Q 020019 126 VAAYDLSTWNRLFLTQLSGPSDGKSCADDVTVDAEGNAYVTDVTGSKIWKVGVK-GEFLSIISSPLFTPKEWYKNLVGLN 204 (332)
Q Consensus 126 l~~~d~~~g~~~~~~~l~~~~~~~~~~ndiavd~dG~lyvtd~~~~~I~~v~~~-g~~~~~~~~~~~~~p~~~~~~~~~n 204 (332)
|..||.++++......- . ....+.+++.|+|+++++-+..+.|..+|.. ++....+.. ......
T Consensus 188 i~iwd~~~~~~~~~~~~--h---~~~v~~l~~spd~~~l~s~s~dg~i~iwd~~~~~~~~~~~~----------h~~~v~ 252 (321)
T 3ow8_A 188 INIFDIATGKLLHTLEG--H---AMPIRSLTFSPDSQLLVTASDDGYIKIYDVQHANLAGTLSG----------HASWVL 252 (321)
T ss_dssp EEEEETTTTEEEEEECC--C---SSCCCEEEECTTSCEEEEECTTSCEEEEETTTCCEEEEECC----------CSSCEE
T ss_pred EEEEECCCCcEEEEEcc--c---CCceeEEEEcCCCCEEEEEcCCCeEEEEECCCcceeEEEcC----------CCCceE
Confidence 88999998877644321 1 2456789999999988888888888888865 343332211 112356
Q ss_pred eEEEccCceEEEEeCCCCeEEEEeCCCCCCccceeEEEEecCCCCCCCCeEEEeCCCeEEEEe
Q 020019 205 GIVYHPDGFLIVIHTFSGNLFKIDIVDGVGEGEEIKLIRVAGGPLSFGDGLELLSPTKLVVAG 267 (332)
Q Consensus 205 Gi~~~~dG~Lyva~~~~~~i~~id~~~~~~~~~~~~~v~~~g~~~~~pdGi~~~~dG~l~va~ 267 (332)
.++|+|+|..+++-...++|..+++.++ +.+..+.. ......++++.++|+.+++.
T Consensus 253 ~~~~sp~~~~l~s~s~D~~v~iwd~~~~----~~~~~~~~---h~~~v~~v~~s~~g~~l~s~ 308 (321)
T 3ow8_A 253 NVAFCPDDTHFVSSSSDKSVKVWDVGTR----TCVHTFFD---HQDQVWGVKYNGNGSKIVSV 308 (321)
T ss_dssp EEEECTTSSEEEEEETTSCEEEEETTTT----EEEEEECC---CSSCEEEEEECTTSSEEEEE
T ss_pred EEEECCCCCEEEEEeCCCcEEEEeCCCC----EEEEEEcC---CCCcEEEEEECCCCCEEEEE
Confidence 8999999955556667788988998876 23433321 22456789999998877764
|
| >4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ... | Back alignment and structure |
|---|
Probab=98.82 E-value=3.2e-05 Score=68.96 Aligned_cols=227 Identities=14% Similarity=0.099 Sum_probs=135.3
Q ss_pred cccceEEcCCCCEEEEEecCCeEEEEECCCCCCCccceeeeEEecccCcCCCccceEEEeCCCCeEEEEEeCcCCCccce
Q 020019 46 FRECAKWDDSGRRFIVSFLDGGIGQVAVPDDYPPGTVLEEVTLVKDLELTGNGSLGLVLDHPRNRLLVVAADVFGNKYSA 125 (332)
Q Consensus 46 ~pegia~d~~g~~~~~~~~~g~I~~vd~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~vd~~~g~l~v~~~~~~~~~~~~ 125 (332)
....++++++++.+++...++.|..++..+++. .. .+.... .....+.++++ +.++++... .+.
T Consensus 67 ~v~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~----~~--~~~~~~----~~v~~~~~~~~-~~~l~s~~~-----d~~ 130 (312)
T 4ery_A 67 GISDVAWSSDSNLLVSASDDKTLKIWDVSSGKC----LK--TLKGHS----NYVFCCNFNPQ-SNLIVSGSF-----DES 130 (312)
T ss_dssp CEEEEEECTTSSEEEEEETTSEEEEEETTTCCE----EE--EEECCS----SCEEEEEECSS-SSEEEEEET-----TSC
T ss_pred ceEEEEEcCCCCEEEEECCCCEEEEEECCCCcE----EE--EEcCCC----CCEEEEEEcCC-CCEEEEEeC-----CCc
Confidence 456789999999888887789999999876652 11 232111 24678899997 554544432 356
Q ss_pred EEEEECCCCcEEEEEecCCCCCCCCCccceEECCCCcEEEEeCCCCeEEEEcCC-CceEEEecCCCCCCcccccCccccC
Q 020019 126 VAAYDLSTWNRLFLTQLSGPSDGKSCADDVTVDAEGNAYVTDVTGSKIWKVGVK-GEFLSIISSPLFTPKEWYKNLVGLN 204 (332)
Q Consensus 126 l~~~d~~~g~~~~~~~l~~~~~~~~~~ndiavd~dG~lyvtd~~~~~I~~v~~~-g~~~~~~~~~~~~~p~~~~~~~~~n 204 (332)
+..||.++++....... .......+++.++|+++++-+..+.|..+|.. ++....+... ......
T Consensus 131 i~iwd~~~~~~~~~~~~-----~~~~v~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~---------~~~~~~ 196 (312)
T 4ery_A 131 VRIWDVKTGKCLKTLPA-----HSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDD---------DNPPVS 196 (312)
T ss_dssp EEEEETTTCCEEEEECC-----CSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEEECCS---------SCCCEE
T ss_pred EEEEECCCCEEEEEecC-----CCCcEEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeeEEecc---------CCCceE
Confidence 89999998876544322 12346779999999988888888889888875 4433322111 112346
Q ss_pred eEEEccCceEEEEeCCCCeEEEEeCCCCCCccceeEEEEecCCCCCCCCeEEEeCCCeEEEEeC--CceEEEEcCCCceE
Q 020019 205 GIVYHPDGFLIVIHTFSGNLFKIDIVDGVGEGEEIKLIRVAGGPLSFGDGLELLSPTKLVVAGN--PSARLVESSDGWET 282 (332)
Q Consensus 205 Gi~~~~dG~Lyva~~~~~~i~~id~~~~~~~~~~~~~v~~~g~~~~~pdGi~~~~dG~l~va~~--~~~~~v~~~dg~~~ 282 (332)
.++++|+|..+++-...+.|..+++.+++ .+..+................+++.++++.. +..++.....+
T Consensus 197 ~~~~~~~~~~l~~~~~d~~i~iwd~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~l~sg~~dg~i~vwd~~~~--- 269 (312)
T 4ery_A 197 FVKFSPNGKYILAATLDNTLKLWDYSKGK----CLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTK--- 269 (312)
T ss_dssp EEEECTTSSEEEEEETTTEEEEEETTTTE----EEEEECSSCCSSSCCCEEEECSSSCEEEECCTTSCEEEEETTTC---
T ss_pred EEEECCCCCEEEEEcCCCeEEEEECCCCc----EEEEEEecCCceEEEEEEEEeCCCcEEEEECCCCEEEEEECCCc---
Confidence 78999999545555667889999988762 3333332100111112222235677776653 23444445555
Q ss_pred EEEEeeecCCCcccceEEEE-ECCeEEEEE
Q 020019 283 AAVVAKFSGPVHRLATAATV-KDGRVYLNH 311 (332)
Q Consensus 283 ~~~~~~~~~~~~~~pt~va~-~~g~lyv~~ 311 (332)
++...+... .....++++ .++.+.++.
T Consensus 270 -~~~~~~~~h-~~~v~~~~~~p~~~~l~s~ 297 (312)
T 4ery_A 270 -EIVQKLQGH-TDVVISTACHPTENIIASA 297 (312)
T ss_dssp -CEEEEECCC-SSCEEEEEECSSSSEEEEE
T ss_pred -hhhhhhhcc-CCcEEEEeecCcCCceEEE
Confidence 233333321 223456777 555555543
|
| >2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme} | Back alignment and structure |
|---|
Probab=98.80 E-value=9.2e-06 Score=78.80 Aligned_cols=220 Identities=11% Similarity=0.094 Sum_probs=138.5
Q ss_pred cccceEEcCCCCEEEEEecCCeEEEEECCCCCCCccceeeeEEecccCcCCCccceEEEeCCCCeEEEEEeCcCCCccce
Q 020019 46 FRECAKWDDSGRRFIVSFLDGGIGQVAVPDDYPPGTVLEEVTLVKDLELTGNGSLGLVLDHPRNRLLVVAADVFGNKYSA 125 (332)
Q Consensus 46 ~pegia~d~~g~~~~~~~~~g~I~~vd~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~vd~~~g~l~v~~~~~~~~~~~~ 125 (332)
...+++++++|+.+++...++.|..++.. ++. .+ .+.... ..+.+++++++ ++.+++... .+.
T Consensus 346 ~v~~~~~s~~g~~l~~~~~dg~v~~~~~~-~~~----~~--~~~~~~----~~v~~~~~s~d-g~~l~~~~~-----d~~ 408 (577)
T 2ymu_A 346 SVWGVAFSPDGQTIASASDDKTVKLWNRN-GQL----LQ--TLTGHS----SSVRGVAFSPD-GQTIASASD-----DKT 408 (577)
T ss_dssp CEEEEEECTTSSEEEEEETTSEEEEEETT-CCE----EE--EEECCS----SCEEEEEECTT-SSCEEEEET-----TSE
T ss_pred CEEEEEECCCCCEEEEEeCCCEEEEEcCC-CCE----EE--EecCCC----CCeEEEEECCC-CCEEEEEeC-----CCE
Confidence 44578999999988777778899999864 331 12 222111 25688999997 664444332 356
Q ss_pred EEEEECCCCcEEEEEecCCCCCCCCCccceEECCCCcEEEEeCCCCeEEEEcCCCceEEEecCCCCCCcccccCccccCe
Q 020019 126 VAAYDLSTWNRLFLTQLSGPSDGKSCADDVTVDAEGNAYVTDVTGSKIWKVGVKGEFLSIISSPLFTPKEWYKNLVGLNG 205 (332)
Q Consensus 126 l~~~d~~~g~~~~~~~l~~~~~~~~~~ndiavd~dG~lyvtd~~~~~I~~v~~~g~~~~~~~~~~~~~p~~~~~~~~~nG 205 (332)
|..||.+ ++......- . .....++++.||++.+++-+..+.|..++.+++....+... ......
T Consensus 409 v~~~~~~-~~~~~~~~~--~---~~~v~~~~~s~d~~~l~~~~~d~~v~~w~~~~~~~~~~~~~----------~~~v~~ 472 (577)
T 2ymu_A 409 VKLWNRN-GQLLQTLTG--H---SSSVWGVAFSPDDQTIASASDDKTVKLWNRNGQLLQTLTGH----------SSSVRG 472 (577)
T ss_dssp EEEECTT-CCEEEEEEC--C---SSCEEEEEECTTSSEEEEEETTSEEEEEETTSCEEEEEECC----------SSCEEE
T ss_pred EEEEeCC-CCEEEEecC--C---CCCeEEEEECCCCCEEEEEcCCCEEEEEECCCCEEEEEcCC----------CCCEEE
Confidence 8889964 555433321 1 24567899999999888888889998888887755433211 123578
Q ss_pred EEEccCceEEEEeCCCCeEEEEeCCCCCCccceeEEEEecCCCCCCCCeEEEeCCCeEEEEe-CCceEEEEcCCCceEEE
Q 020019 206 IVYHPDGFLIVIHTFSGNLFKIDIVDGVGEGEEIKLIRVAGGPLSFGDGLELLSPTKLVVAG-NPSARLVESSDGWETAA 284 (332)
Q Consensus 206 i~~~~dG~Lyva~~~~~~i~~id~~~~~~~~~~~~~v~~~g~~~~~pdGi~~~~dG~l~va~-~~~~~~v~~~dg~~~~~ 284 (332)
++|+|||.+.++-...+.|..++.+.. .++.+.. .......+++.+||+++++. ......+...++...
T Consensus 473 ~~~spd~~~las~~~d~~i~iw~~~~~-----~~~~~~~---h~~~v~~l~~s~dg~~l~s~~~dg~v~lwd~~~~~~-- 542 (577)
T 2ymu_A 473 VAFSPDGQTIASASDDKTVKLWNRNGQ-----LLQTLTG---HSSSVRGVAFSPDGQTIASASDDKTVKLWNRNGQLL-- 542 (577)
T ss_dssp EEECTTSCEEEEEETTSEEEEEETTSC-----EEEEEEC---CSSCEEEEEECTTSSCEEEEETTSEEEEECTTSCEE--
T ss_pred EEEcCCCCEEEEEeCCCEEEEEcCCCC-----EEEEEeC---CCCCEEEEEEcCCCCEEEEEECcCEEEEEeCCCCEE--
Confidence 999999966666566778887886532 4444442 22456789999999877764 333233444566222
Q ss_pred EEeeecCCCcccceEEEE-ECCeEEEEE
Q 020019 285 VVAKFSGPVHRLATAATV-KDGRVYLNH 311 (332)
Q Consensus 285 ~~~~~~~~~~~~pt~va~-~~g~lyv~~ 311 (332)
..+.+- -...++++| .+++.+++.
T Consensus 543 --~~~~~h-~~~v~~~~fs~dg~~l~s~ 567 (577)
T 2ymu_A 543 --QTLTGH-SSSVWGVAFSPDGQTIASA 567 (577)
T ss_dssp --EEEECC-SSCEEEEEECTTSSCEEEE
T ss_pred --EEEcCC-CCCEEEEEEcCCCCEEEEE
Confidence 222211 123477888 677666643
|
| >1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C | Back alignment and structure |
|---|
Probab=98.79 E-value=6.8e-06 Score=74.69 Aligned_cols=232 Identities=9% Similarity=0.032 Sum_probs=135.0
Q ss_pred cccceEEcCCCCEEEEEecCCeEEEEECCCCCCCccceeeeEEecccCcCCCccceEEEeCCCCeEEEEEeCcCCCccce
Q 020019 46 FRECAKWDDSGRRFIVSFLDGGIGQVAVPDDYPPGTVLEEVTLVKDLELTGNGSLGLVLDHPRNRLLVVAADVFGNKYSA 125 (332)
Q Consensus 46 ~pegia~d~~g~~~~~~~~~g~I~~vd~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~vd~~~g~l~v~~~~~~~~~~~~ 125 (332)
....++++++|+++++...++.|..++..+++. .....+... ......++++++ ++++++... .+.
T Consensus 10 ~i~~~~~s~~~~~l~~~~~d~~v~i~~~~~~~~----~~~~~~~~h----~~~v~~~~~~~~-~~~l~~~~~-----dg~ 75 (372)
T 1k8k_C 10 PISCHAWNKDRTQIAICPNNHEVHIYEKSGNKW----VQVHELKEH----NGQVTGVDWAPD-SNRIVTCGT-----DRN 75 (372)
T ss_dssp CCCEEEECTTSSEEEEECSSSEEEEEEEETTEE----EEEEEEECC----SSCEEEEEEETT-TTEEEEEET-----TSC
T ss_pred CeEEEEECCCCCEEEEEeCCCEEEEEeCCCCcE----EeeeeecCC----CCcccEEEEeCC-CCEEEEEcC-----CCe
Confidence 456799999999888776789999998876531 010122211 125789999996 654444332 356
Q ss_pred EEEEECCCCcEEEEEecCCCCCCCCCccceEECCCCcEEEEeCCCCeEEEEcCCC-c-e--EEEecCCCCCCcccccCcc
Q 020019 126 VAAYDLSTWNRLFLTQLSGPSDGKSCADDVTVDAEGNAYVTDVTGSKIWKVGVKG-E-F--LSIISSPLFTPKEWYKNLV 201 (332)
Q Consensus 126 l~~~d~~~g~~~~~~~l~~~~~~~~~~ndiavd~dG~lyvtd~~~~~I~~v~~~g-~-~--~~~~~~~~~~~p~~~~~~~ 201 (332)
+..||.++++......+.. .......+++.++|+.+++-...+.|..++.+. + . ....... ...
T Consensus 76 i~vwd~~~~~~~~~~~~~~---~~~~v~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~---------~~~ 143 (372)
T 1k8k_C 76 AYVWTLKGRTWKPTLVILR---INRAARCVRWAPNEKKFAVGSGSRVISICYFEQENDWWVCKHIKKP---------IRS 143 (372)
T ss_dssp EEEEEEETTEEEEEEECCC---CSSCEEEEEECTTSSEEEEEETTSSEEEEEEETTTTEEEEEEECTT---------CCS
T ss_pred EEEEECCCCeeeeeEEeec---CCCceeEEEECCCCCEEEEEeCCCEEEEEEecCCCcceeeeeeecc---------cCC
Confidence 8899998887655554421 135678899999998777766677766655432 2 1 1111111 123
Q ss_pred ccCeEEEccCceEEEEeCCCCeEEEEeCCCCCC--------------ccceeEEEEecCCCCCCCCeEEEeCCCeEEEEe
Q 020019 202 GLNGIVYHPDGFLIVIHTFSGNLFKIDIVDGVG--------------EGEEIKLIRVAGGPLSFGDGLELLSPTKLVVAG 267 (332)
Q Consensus 202 ~~nGi~~~~dG~Lyva~~~~~~i~~id~~~~~~--------------~~~~~~~v~~~g~~~~~pdGi~~~~dG~l~va~ 267 (332)
....+++++++.++++-...+.|..++...... .+..+..+. ........+++.++|+++++.
T Consensus 144 ~i~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~v~~~~~~~~~~~l~~~ 220 (372)
T 1k8k_C 144 TVLSLDWHPNSVLLAAGSCDFKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESS---SSCGWVHGVCFSANGSRVAWV 220 (372)
T ss_dssp CEEEEEECTTSSEEEEEETTSCEEEEECCCTTTSCCCCCBTTBSCCCTTCEEEECC---CCSSCEEEEEECSSSSEEEEE
T ss_pred CeeEEEEcCCCCEEEEEcCCCCEEEEEcccccccccccccccccccchhhheEecC---CCCCeEEEEEECCCCCEEEEE
Confidence 467999999995555555677888888542110 011232222 122456789999998766664
Q ss_pred -CC-ceEEEEcCCCceEEEEEeeecCCCcccceEEEE-ECCeEEEEE
Q 020019 268 -NP-SARLVESSDGWETAAVVAKFSGPVHRLATAATV-KDGRVYLNH 311 (332)
Q Consensus 268 -~~-~~~~v~~~dg~~~~~~~~~~~~~~~~~pt~va~-~~g~lyv~~ 311 (332)
.. ..++.....+... ..+... ....+++++ .+++++++.
T Consensus 221 ~~d~~i~i~d~~~~~~~----~~~~~~-~~~v~~~~~~~~~~~l~~~ 262 (372)
T 1k8k_C 221 SHDSTVCLADADKKMAV----ATLASE-TLPLLAVTFITESSLVAAG 262 (372)
T ss_dssp ETTTEEEEEEGGGTTEE----EEEECS-SCCEEEEEEEETTEEEEEE
T ss_pred eCCCEEEEEECCCCcee----EEEccC-CCCeEEEEEecCCCEEEEE
Confidence 33 3444455555222 222211 122366777 666655543
|
| >2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A | Back alignment and structure |
|---|
Probab=98.77 E-value=3.1e-06 Score=79.73 Aligned_cols=181 Identities=12% Similarity=0.156 Sum_probs=114.4
Q ss_pred cccceEEcCCCCEEEEEecC---CeEEEEECCCCCCCccceeeeEEecccCcCCCccceEEEeCCCCe-EEEEEeCcCCC
Q 020019 46 FRECAKWDDSGRRFIVSFLD---GGIGQVAVPDDYPPGTVLEEVTLVKDLELTGNGSLGLVLDHPRNR-LLVVAADVFGN 121 (332)
Q Consensus 46 ~pegia~d~~g~~~~~~~~~---g~I~~vd~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~vd~~~g~-l~v~~~~~~~~ 121 (332)
...+++|+|+|+.++....+ ..|+.++..+++. . .+...+ .....++++|+ |+ |+++....
T Consensus 180 ~v~~~~~Spdg~~la~~s~~~~~~~i~~~d~~tg~~-----~--~l~~~~----~~~~~~~~spd-g~~la~~~~~~--- 244 (415)
T 2hqs_A 180 PLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAV-----R--QVASFP----RHNGAPAFSPD-GSKLAFALSKT--- 244 (415)
T ss_dssp CEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCCE-----E--EEECCS----SCEEEEEECTT-SSEEEEEECTT---
T ss_pred cceeeEEcCCCCEEEEEEecCCCcEEEEEECCCCcE-----E--EeecCC----CcccCEEEcCC-CCEEEEEEecC---
Confidence 44578999999866554333 4899999887752 1 233222 24678999997 65 55443321
Q ss_pred ccceEEEEECCCCcEEEEEecCCCCCCCCCccceEECCCCc-EEEEeCC--CCeEEEEcCCCceEEEecCCCCCCccccc
Q 020019 122 KYSAVAAYDLSTWNRLFLTQLSGPSDGKSCADDVTVDAEGN-AYVTDVT--GSKIWKVGVKGEFLSIISSPLFTPKEWYK 198 (332)
Q Consensus 122 ~~~~l~~~d~~~g~~~~~~~l~~~~~~~~~~ndiavd~dG~-lyvtd~~--~~~I~~v~~~g~~~~~~~~~~~~~p~~~~ 198 (332)
+...|+.||+++++.. .+.. .......+++.|||+ |+++... ...||.++.++.....+...
T Consensus 245 g~~~i~~~d~~~~~~~---~l~~---~~~~~~~~~~spdg~~l~~~s~~~g~~~i~~~d~~~~~~~~l~~~--------- 309 (415)
T 2hqs_A 245 GSLNLYVMDLASGQIR---QVTD---GRSNNTEPTWFPDSQNLAFTSDQAGRPQVYKVNINGGAPQRITWE--------- 309 (415)
T ss_dssp SSCEEEEEETTTCCEE---ECCC---CSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTSSCCEECCCS---------
T ss_pred CCceEEEEECCCCCEE---eCcC---CCCcccceEECCCCCEEEEEECCCCCcEEEEEECCCCCEEEEecC---------
Confidence 2346999999988763 3321 124566799999997 6655433 34899999875422221110
Q ss_pred CccccCeEEEccCc-eEEEEeCC--CCeEEEEeCCCCCCccceeEEEEecCCCCCCCCeEEEeCCCeEEEE
Q 020019 199 NLVGLNGIVYHPDG-FLIVIHTF--SGNLFKIDIVDGVGEGEEIKLIRVAGGPLSFGDGLELLSPTKLVVA 266 (332)
Q Consensus 199 ~~~~~nGi~~~~dG-~Lyva~~~--~~~i~~id~~~~~~~~~~~~~v~~~g~~~~~pdGi~~~~dG~l~va 266 (332)
......++|+||| .|+++... ...|+.++++++ ....+.. . .....+++.+||+.++.
T Consensus 310 -~~~~~~~~~spdG~~l~~~~~~~g~~~i~~~d~~~~-----~~~~l~~---~-~~~~~~~~spdg~~l~~ 370 (415)
T 2hqs_A 310 -GSQNQDADVSSDGKFMVMVSSNGGQQHIAKQDLATG-----GVQVLSS---T-FLDETPSLAPNGTMVIY 370 (415)
T ss_dssp -SSEEEEEEECTTSSEEEEEEECSSCEEEEEEETTTC-----CEEECCC---S-SSCEEEEECTTSSEEEE
T ss_pred -CCcccCeEECCCCCEEEEEECcCCceEEEEEECCCC-----CEEEecC---C-CCcCCeEEcCCCCEEEE
Confidence 1234578999999 78877665 358999999876 3332221 1 25678899999884443
|
| >2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str} | Back alignment and structure |
|---|
Probab=98.76 E-value=5.7e-06 Score=72.12 Aligned_cols=184 Identities=10% Similarity=0.089 Sum_probs=112.0
Q ss_pred ccccceEEcCCCCEEEEEecCCeEEEEECCC-CCCCccceeeeEEecccCcCCCccceEEEeCCCCe-EEEEEeCcCCCc
Q 020019 45 FFRECAKWDDSGRRFIVSFLDGGIGQVAVPD-DYPPGTVLEEVTLVKDLELTGNGSLGLVLDHPRNR-LLVVAADVFGNK 122 (332)
Q Consensus 45 ~~pegia~d~~g~~~~~~~~~g~I~~vd~~~-~~~~~~~~~~~~~~~~~~~~~~~~~gi~vd~~~g~-l~v~~~~~~~~~ 122 (332)
....+++++++|+.+++.. ++.|+.++..+ ++. . .+.... ....+..++++++ |+ |+++..... .
T Consensus 42 ~~v~~~~~spdg~~l~~~~-~~~i~~~d~~~~~~~-----~--~~~~~~--~~~~~~~~~~spd-g~~l~~~~~~~~--~ 108 (297)
T 2ojh_A 42 ELFEAPNWSPDGKYLLLNS-EGLLYRLSLAGDPSP-----E--KVDTGF--ATICNNDHGISPD-GALYAISDKVEF--G 108 (297)
T ss_dssp SCCEEEEECTTSSEEEEEE-TTEEEEEESSSCCSC-----E--ECCCTT--CCCBCSCCEECTT-SSEEEEEECTTT--S
T ss_pred cceEeeEECCCCCEEEEEc-CCeEEEEeCCCCCCc-----e--Eecccc--ccccccceEECCC-CCEEEEEEeCCC--C
Confidence 3567899999999776654 78999999887 652 1 222111 1125678899997 55 444432111 2
Q ss_pred cceEEEEECCCCcEEEEEecCCCCCCCCCccceEECCCCc-EEEEeCCCC--eEEEEcCCCceEEEecCCCCCCcccccC
Q 020019 123 YSAVAAYDLSTWNRLFLTQLSGPSDGKSCADDVTVDAEGN-AYVTDVTGS--KIWKVGVKGEFLSIISSPLFTPKEWYKN 199 (332)
Q Consensus 123 ~~~l~~~d~~~g~~~~~~~l~~~~~~~~~~ndiavd~dG~-lyvtd~~~~--~I~~v~~~g~~~~~~~~~~~~~p~~~~~ 199 (332)
...|+.++.++++.. .+.. ....+.+++.|+|+ ++++....+ .||.++.++.....+.. .
T Consensus 109 ~~~l~~~~~~~~~~~---~~~~----~~~~~~~~~spdg~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~----------~ 171 (297)
T 2ojh_A 109 KSAIYLLPSTGGTPR---LMTK----NLPSYWHGWSPDGKSFTYCGIRDQVFDIYSMDIDSGVETRLTH----------G 171 (297)
T ss_dssp SCEEEEEETTCCCCE---ECCS----SSSEEEEEECTTSSEEEEEEEETTEEEEEEEETTTCCEEECCC----------S
T ss_pred cceEEEEECCCCceE---Eeec----CCCccceEECCCCCEEEEEECCCCceEEEEEECCCCcceEccc----------C
Confidence 457888998776643 2211 12367789999986 665654444 68888776443322211 1
Q ss_pred ccccCeEEEccCc-eEEEEeC--CCCeEEEEeCCCCCCccceeEEEEecCCCCCCCCeEEEeCCCeEEEE
Q 020019 200 LVGLNGIVYHPDG-FLIVIHT--FSGNLFKIDIVDGVGEGEEIKLIRVAGGPLSFGDGLELLSPTKLVVA 266 (332)
Q Consensus 200 ~~~~nGi~~~~dG-~Lyva~~--~~~~i~~id~~~~~~~~~~~~~v~~~g~~~~~pdGi~~~~dG~l~va 266 (332)
......++++||| .|+++.. ...+||.++..++ ....+.. .......++++++|+.++.
T Consensus 172 ~~~~~~~~~s~dg~~l~~~~~~~~~~~i~~~~~~~~-----~~~~~~~---~~~~~~~~~~s~dg~~l~~ 233 (297)
T 2ojh_A 172 EGRNDGPDYSPDGRWIYFNSSRTGQMQIWRVRVDGS-----SVERITD---SAYGDWFPHPSPSGDKVVF 233 (297)
T ss_dssp SSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTSS-----CEEECCC---CSEEEEEEEECTTSSEEEE
T ss_pred CCccccceECCCCCEEEEEecCCCCccEEEECCCCC-----CcEEEec---CCcccCCeEECCCCCEEEE
Confidence 1235789999999 7777653 4557888887654 3332321 1123456888999874443
|
| >4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A | Back alignment and structure |
|---|
Probab=98.75 E-value=1.1e-06 Score=81.39 Aligned_cols=201 Identities=10% Similarity=0.069 Sum_probs=121.7
Q ss_pred cccceEEcCCCCEEEE-E-ecCCeEEEEECCCCCCCccceeeeEEecccCcCCCccceEEEeCCCCeEEEEEeCcCCCcc
Q 020019 46 FRECAKWDDSGRRFIV-S-FLDGGIGQVAVPDDYPPGTVLEEVTLVKDLELTGNGSLGLVLDHPRNRLLVVAADVFGNKY 123 (332)
Q Consensus 46 ~pegia~d~~g~~~~~-~-~~~g~I~~vd~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~vd~~~g~l~v~~~~~~~~~~ 123 (332)
+...++++|||+++++ + ..++.|..+|..+++. . ..+... ..+..+++.|+ |+++++..+
T Consensus 135 ~~~~v~fSpDg~~la~as~~~d~~i~iwd~~~~~~----~---~~~~~~----~~V~~v~fspd-g~~l~s~s~------ 196 (365)
T 4h5i_A 135 YTKLVYISREGTVAAIASSKVPAIMRIIDPSDLTE----K---FEIETR----GEVKDLHFSTD-GKVVAYITG------ 196 (365)
T ss_dssp CEEEEEECTTSSCEEEEESCSSCEEEEEETTTTEE----E---EEEECS----SCCCEEEECTT-SSEEEEECS------
T ss_pred CEEEEEEcCCCCEEEEEECCCCCEEEEeECCCCcE----E---EEeCCC----CceEEEEEccC-CceEEeccc------
Confidence 3456899999997754 3 4578999999887652 1 122111 24789999997 876665542
Q ss_pred ceEEEEECCCCcEEEEEecCCCCCCCCCccceEECCCCcEEEEeCCCC----eEEEEcCCCceEEEecCCCCCCcccccC
Q 020019 124 SAVAAYDLSTWNRLFLTQLSGPSDGKSCADDVTVDAEGNAYVTDVTGS----KIWKVGVKGEFLSIISSPLFTPKEWYKN 199 (332)
Q Consensus 124 ~~l~~~d~~~g~~~~~~~l~~~~~~~~~~ndiavd~dG~lyvtd~~~~----~I~~v~~~g~~~~~~~~~~~~~p~~~~~ 199 (332)
..+.+|+..+++........ ......+.+++.|+|+.+++-+..+ .++.++.............+. ..
T Consensus 197 ~~~~~~~~~~~~~~~~~~~~---~~~~~v~~v~fspdg~~l~~~s~d~~~~~~i~~~~~~~~~~~~~~~~~~~-----~~ 268 (365)
T 4h5i_A 197 SSLEVISTVTGSCIARKTDF---DKNWSLSKINFIADDTVLIAASLKKGKGIVLTKISIKSGNTSVLRSKQVT-----NR 268 (365)
T ss_dssp SCEEEEETTTCCEEEEECCC---CTTEEEEEEEEEETTEEEEEEEESSSCCEEEEEEEEETTEEEEEEEEEEE-----SS
T ss_pred eeEEEEEeccCcceeeeecC---CCCCCEEEEEEcCCCCEEEEEecCCcceeEEeecccccceecceeeeeec-----CC
Confidence 35677888877765433321 1124567899999998666543322 355555432111110000000 01
Q ss_pred ccccCeEEEccCceEEEEeCCCCeEEEEeCCCCCCccceeEEEEecCCCCCCCCeEEEeCCCeEEEEeC--CceEEEEcC
Q 020019 200 LVGLNGIVYHPDGFLIVIHTFSGNLFKIDIVDGVGEGEEIKLIRVAGGPLSFGDGLELLSPTKLVVAGN--PSARLVESS 277 (332)
Q Consensus 200 ~~~~nGi~~~~dG~Lyva~~~~~~i~~id~~~~~~~~~~~~~v~~~g~~~~~pdGi~~~~dG~l~va~~--~~~~~v~~~ 277 (332)
....+.++|+|||.+.++-...+.|..+|..++ +.+..+. . ........+++.|||+++++.. ..+++...+
T Consensus 269 ~~~V~~~~~Spdg~~lasgs~D~~V~iwd~~~~----~~~~~~~-~-gH~~~V~~v~fSpdg~~laS~S~D~tvrvw~ip 342 (365)
T 4h5i_A 269 FKGITSMDVDMKGELAVLASNDNSIALVKLKDL----SMSKIFK-Q-AHSFAITEVTISPDSTYVASVSAANTIHIIKLP 342 (365)
T ss_dssp CSCEEEEEECTTSCEEEEEETTSCEEEEETTTT----EEEEEET-T-SSSSCEEEEEECTTSCEEEEEETTSEEEEEECC
T ss_pred CCCeEeEEECCCCCceEEEcCCCEEEEEECCCC----cEEEEec-C-cccCCEEEEEECCCCCEEEEEeCCCeEEEEEcC
Confidence 234578999999966666667788988999877 2343332 2 1334567999999999888863 334444444
Q ss_pred C
Q 020019 278 D 278 (332)
Q Consensus 278 d 278 (332)
.
T Consensus 343 ~ 343 (365)
T 4h5i_A 343 L 343 (365)
T ss_dssp T
T ss_pred C
Confidence 3
|
| >3ott_A Two-component system sensor histidine kinase; beta-propeller, beta-sandwich, transcription; HET: TBR; 2.30A {Bacteroides thetaiotaomicron} PDB: 3va6_A | Back alignment and structure |
|---|
Probab=98.75 E-value=2.3e-06 Score=86.88 Aligned_cols=233 Identities=14% Similarity=0.121 Sum_probs=130.8
Q ss_pred ccceEEcCCCCEEEEEecCCeEEEEECCCCCCCccceeeeEEecccC-cCCCccceEEEeCCCCeEEEEEeCcCCCccce
Q 020019 47 RECAKWDDSGRRFIVSFLDGGIGQVAVPDDYPPGTVLEEVTLVKDLE-LTGNGSLGLVLDHPRNRLLVVAADVFGNKYSA 125 (332)
Q Consensus 47 pegia~d~~g~~~~~~~~~g~I~~vd~~~~~~~~~~~~~~~~~~~~~-~~~~~~~gi~vd~~~g~l~v~~~~~~~~~~~~ 125 (332)
...+..|.+|++|++. .+.|.++++.+++. .......... ...+....|..|.+ |+||++... +.
T Consensus 375 v~~i~~d~~g~lWigt--~~GL~~~~~~~~~~-----~~~~~~~~~~~~~~~~v~~i~~d~~-g~lWigT~~------~G 440 (758)
T 3ott_A 375 IRHIYEDKEQQLWIAT--DGSINRYDYATRQF-----IHYNIVDNTGTYNTNWTYYIFEDTA-GQLWISTCL------GG 440 (758)
T ss_dssp EEEEEECTTSCEEEEE--TTEEEEEETTTTEE-----EEEEEECCC--CBSSSEEEEEECTT-SEEEEEESS------SC
T ss_pred eEEEEECCCCCEEEEe--CCcHhhcCcCCCcE-----EEeecCCCcCCCCCceEEEEEEcCC-CCEEEEECC------Cc
Confidence 3457789999999987 36899999876652 1111111111 11234678888886 999999752 35
Q ss_pred EEEEECCC------CcEE--EEEecCCCCCCCCCccceEECCCCcEEEEeCCCCeEEEEcCCCceEEEecCCCCCCcccc
Q 020019 126 VAAYDLST------WNRL--FLTQLSGPSDGKSCADDVTVDAEGNAYVTDVTGSKIWKVGVKGEFLSIISSPLFTPKEWY 197 (332)
Q Consensus 126 l~~~d~~~------g~~~--~~~~l~~~~~~~~~~ndiavd~dG~lyvtd~~~~~I~~v~~~g~~~~~~~~~~~~~p~~~ 197 (332)
|.+||.++ +... ...... ..........+..|++|+||+.....+.|++++++......+......
T Consensus 441 l~~~~~~~~~~~~~~~~~~~~~~~~~-~~l~~~~i~~i~~d~~g~lWi~~~t~~Gl~~~d~~~~~~~~~~~~~~~----- 514 (758)
T 3ott_A 441 IFVVDKHKLMQSTSGQYIAEQNYSVH-NGLSGMFINQIIPDNEGNVWVLLYNNKGIDKINPRTREVTKLFADELT----- 514 (758)
T ss_dssp EEEEEHHHHHHCCSSEEECSEEECGG-GTCSCSCEEEEEECTTSCEEEEETTCSSEEEEETTTTEEEEECTTTSC-----
T ss_pred eEEEccccccccCCcceecccccccc-cccccceeeeEEEcCCCCEEEEccCCCCcEEEeCCCCceEEecCCCcC-----
Confidence 88888653 1121 111111 011123467799999999999333346799999874433222111111
Q ss_pred cCccccCeEEEccCceEEEEeCCCCeEEEEeCCCCCCccceeEEEEecCCCCCCCCeEEEeCCCeEEEEeCCceEEEEcC
Q 020019 198 KNLVGLNGIVYHPDGFLIVIHTFSGNLFKIDIVDGVGEGEEIKLIRVAGGPLSFGDGLELLSPTKLVVAGNPSARLVESS 277 (332)
Q Consensus 198 ~~~~~~nGi~~~~dG~Lyva~~~~~~i~~id~~~~~~~~~~~~~v~~~g~~~~~pdGi~~~~dG~l~va~~~~~~~v~~~ 277 (332)
....++.|..+.+|.||++.. . -|+++++++.+ .+.+...+-+.....+|..+ +|+||++.+.+...+...
T Consensus 515 -~~~~~~~i~~d~~g~lWigt~-~-Gl~~~~~~~~~-----~~~~~~~gl~~~~i~~i~~~-~g~lWi~t~~Gl~~~~~~ 585 (758)
T 3ott_A 515 -GEKSPNYLLCDEDGLLWVGFH-G-GVMRINPKDES-----QQSISFGSFSNNEILSMTCV-KNSIWVSTTNGLWIIDRK 585 (758)
T ss_dssp -GGGCEEEEEECTTSCEEEEET-T-EEEEECC--CC-----CCBCCCCC---CCEEEEEEE-TTEEEEEESSCEEEEETT
T ss_pred -CCcccceEEECCCCCEEEEec-C-ceEEEecCCCc-----eEEecccCCCccceEEEEEC-CCCEEEECCCCeEEEcCC
Confidence 123467899999999999964 3 49999988663 22221111111335567665 799999987765444443
Q ss_pred CCceEEEEEeeecCCCcccceEEEE--ECCeEEEEEecC
Q 020019 278 DGWETAAVVAKFSGPVHRLATAATV--KDGRVYLNHMLG 314 (332)
Q Consensus 278 dg~~~~~~~~~~~~~~~~~pt~va~--~~g~lyv~~~~g 314 (332)
.. +.. .. .+.. ..+. ..+. .+|+||+...-|
T Consensus 586 ~~-~~~-~~-~~~~--~~~~-~~~~~~~~G~l~fG~~~G 618 (758)
T 3ott_A 586 TM-DAR-QQ-NMTN--KRFT-SLLFDPKEDCVYLGGADG 618 (758)
T ss_dssp TC-CEE-EC---CC--CCCS-EEEEETTTTEEEEECBSE
T ss_pred Cc-eeE-Ee-cCCC--Ccee-eeEEECCCCcEEEecCCc
Confidence 33 221 11 1111 1222 3333 588999854444
|
| >2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme} | Back alignment and structure |
|---|
Probab=98.74 E-value=1.5e-05 Score=77.39 Aligned_cols=193 Identities=11% Similarity=0.091 Sum_probs=124.7
Q ss_pred cccceEEcCCCCEEEEEecCCeEEEEECCCCCCCccceeeeEEecccCcCCCccceEEEeCCCCeEEEEEeCcCCCccce
Q 020019 46 FRECAKWDDSGRRFIVSFLDGGIGQVAVPDDYPPGTVLEEVTLVKDLELTGNGSLGLVLDHPRNRLLVVAADVFGNKYSA 125 (332)
Q Consensus 46 ~pegia~d~~g~~~~~~~~~g~I~~vd~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~vd~~~g~l~v~~~~~~~~~~~~ 125 (332)
...++++.++++.+++...++.|..++..+... . .+. .. ...+.++++.++ ++.+++... .+.
T Consensus 305 ~v~~~~~~~~~~~l~t~~~d~~i~~w~~~~~~~-----~--~~~-~~---~~~v~~~~~s~~-g~~l~~~~~-----dg~ 367 (577)
T 2ymu_A 305 SVWGVAFSPDGQTIASASDDKTVKLWNRNGQHL-----Q--TLT-GH---SSSVWGVAFSPD-GQTIASASD-----DKT 367 (577)
T ss_dssp CEEEEEECTTSSEEEEEETTSCEEEEETTSCEE-----E--EEC-CC---SSCEEEEEECTT-SSEEEEEET-----TSE
T ss_pred CeEEEEECCCCCEEEEEeCCCeEEEEeCCCCee-----E--EEe-CC---CCCEEEEEECCC-CCEEEEEeC-----CCE
Confidence 445789999999888777789999998764321 1 221 11 125678999997 665544332 356
Q ss_pred EEEEECCCCcEEEEEecCCCCCCCCCccceEECCCCcEEEEeCCCCeEEEEcCCCceEEEecCCCCCCcccccCccccCe
Q 020019 126 VAAYDLSTWNRLFLTQLSGPSDGKSCADDVTVDAEGNAYVTDVTGSKIWKVGVKGEFLSIISSPLFTPKEWYKNLVGLNG 205 (332)
Q Consensus 126 l~~~d~~~g~~~~~~~l~~~~~~~~~~ndiavd~dG~lyvtd~~~~~I~~v~~~g~~~~~~~~~~~~~p~~~~~~~~~nG 205 (332)
+..||.. ++......- .......+++.|+|+.+++-+..+.|..++.+++....+... .....+
T Consensus 368 v~~~~~~-~~~~~~~~~-----~~~~v~~~~~s~dg~~l~~~~~d~~v~~~~~~~~~~~~~~~~----------~~~v~~ 431 (577)
T 2ymu_A 368 VKLWNRN-GQLLQTLTG-----HSSSVRGVAFSPDGQTIASASDDKTVKLWNRNGQLLQTLTGH----------SSSVWG 431 (577)
T ss_dssp EEEEETT-CCEEEEEEC-----CSSCEEEEEECTTSSCEEEEETTSEEEEECTTCCEEEEEECC----------SSCEEE
T ss_pred EEEEcCC-CCEEEEecC-----CCCCeEEEEECCCCCEEEEEeCCCEEEEEeCCCCEEEEecCC----------CCCeEE
Confidence 8889964 555433321 124567899999998888777788999999887755433211 123568
Q ss_pred EEEccCceEEEEeCCCCeEEEEeCCCCCCccceeEEEEecCCCCCCCCeEEEeCCCeEEEEeC-CceEEEEcCCC
Q 020019 206 IVYHPDGFLIVIHTFSGNLFKIDIVDGVGEGEEIKLIRVAGGPLSFGDGLELLSPTKLVVAGN-PSARLVESSDG 279 (332)
Q Consensus 206 i~~~~dG~Lyva~~~~~~i~~id~~~~~~~~~~~~~v~~~g~~~~~pdGi~~~~dG~l~va~~-~~~~~v~~~dg 279 (332)
++++||+.+.++-...+.|..++.... .+..+.. .......+++.++|+++++.. .....+...++
T Consensus 432 ~~~s~d~~~l~~~~~d~~v~~w~~~~~-----~~~~~~~---~~~~v~~~~~spd~~~las~~~d~~i~iw~~~~ 498 (577)
T 2ymu_A 432 VAFSPDDQTIASASDDKTVKLWNRNGQ-----LLQTLTG---HSSSVRGVAFSPDGQTIASASDDKTVKLWNRNG 498 (577)
T ss_dssp EEECTTSSEEEEEETTSEEEEEETTSC-----EEEEEEC---CSSCEEEEEECTTSCEEEEEETTSEEEEEETTS
T ss_pred EEECCCCCEEEEEcCCCEEEEEECCCC-----EEEEEcC---CCCCEEEEEEcCCCCEEEEEeCCCEEEEEcCCC
Confidence 999999955555566778887886533 3443432 224556899999999887753 33233344566
|
| >2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A | Back alignment and structure |
|---|
Probab=98.73 E-value=4.3e-06 Score=77.70 Aligned_cols=206 Identities=12% Similarity=0.054 Sum_probs=131.2
Q ss_pred CccccceEEcCCC-CEEEEEecCCeEEEEECCCCCCCccceeeeEEecccCcCCCccceEEEeCCCCeEEEEEeCcCCCc
Q 020019 44 SFFRECAKWDDSG-RRFIVSFLDGGIGQVAVPDDYPPGTVLEEVTLVKDLELTGNGSLGLVLDHPRNRLLVVAADVFGNK 122 (332)
Q Consensus 44 ~~~pegia~d~~g-~~~~~~~~~g~I~~vd~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~vd~~~g~l~v~~~~~~~~~ 122 (332)
......+++++++ +++++...++.|..+|..+++. .. .+. ... -......++++++ +.++++.. .
T Consensus 131 ~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~----~~--~~~-~~~-~~~~v~~~~~~~~-~~~l~~~~-----~ 196 (402)
T 2aq5_A 131 TKRVGIVAWHPTAQNVLLSAGCDNVILVWDVGTGAA----VL--TLG-PDV-HPDTIYSVDWSRD-GALICTSC-----R 196 (402)
T ss_dssp SSCEEEEEECSSBTTEEEEEETTSCEEEEETTTTEE----EE--EEC-TTT-CCSCEEEEEECTT-SSCEEEEE-----T
T ss_pred CCeEEEEEECcCCCCEEEEEcCCCEEEEEECCCCCc----cE--EEe-cCC-CCCceEEEEECCC-CCEEEEEe-----c
Confidence 3355679999998 5777777789999999876652 11 221 011 1125789999996 65444433 1
Q ss_pred cceEEEEECCCCcEEEEEecCCCCCCCCCccceEECCCCcEEEEe---CCCCeEEEEcCCC-ce-EEEecCCCCCCcccc
Q 020019 123 YSAVAAYDLSTWNRLFLTQLSGPSDGKSCADDVTVDAEGNAYVTD---VTGSKIWKVGVKG-EF-LSIISSPLFTPKEWY 197 (332)
Q Consensus 123 ~~~l~~~d~~~g~~~~~~~l~~~~~~~~~~ndiavd~dG~lyvtd---~~~~~I~~v~~~g-~~-~~~~~~~~~~~p~~~ 197 (332)
.+.|.+||+++++........ . ....+..+++.++|+++++- ...+.|..+|... +. .......
T Consensus 197 d~~i~iwd~~~~~~~~~~~~~--~-~~~~~~~~~~~~~~~~l~~g~~~~~d~~i~iwd~~~~~~~~~~~~~~-------- 265 (402)
T 2aq5_A 197 DKRVRVIEPRKGTVVAEKDRP--H-EGTRPVHAVFVSEGKILTTGFSRMSERQVALWDTKHLEEPLSLQELD-------- 265 (402)
T ss_dssp TSEEEEEETTTTEEEEEEECS--S-CSSSCCEEEECSTTEEEEEEECTTCCEEEEEEETTBCSSCSEEEECC--------
T ss_pred CCcEEEEeCCCCceeeeeccC--C-CCCcceEEEEcCCCcEEEEeccCCCCceEEEEcCccccCCceEEecc--------
Confidence 457999999988876554221 1 12357889999999877776 5778888888763 21 1111110
Q ss_pred cCccccCeEEEccCc-eEEEEeCCCCeEEEEeCCCCCCccceeEEEEecCCCCCCCCeEEEeCCCeEEEEeCCceEEEEc
Q 020019 198 KNLVGLNGIVYHPDG-FLIVIHTFSGNLFKIDIVDGVGEGEEIKLIRVAGGPLSFGDGLELLSPTKLVVAGNPSARLVES 276 (332)
Q Consensus 198 ~~~~~~nGi~~~~dG-~Lyva~~~~~~i~~id~~~~~~~~~~~~~v~~~g~~~~~pdGi~~~~dG~l~va~~~~~~~v~~ 276 (332)
.......+++++|| .||++....+.|..++..+++. .+..+... .......++++.++|.+.++.....++...
T Consensus 266 -~~~~v~~~~~s~~~~~l~~~g~~dg~i~i~d~~~~~~---~~~~l~~~-~~~~~v~~~~~sp~~~~~~s~~~~~~~~~l 340 (402)
T 2aq5_A 266 -TSSGVLLPFFDPDTNIVYLCGKGDSSIRYFEITSEAP---FLHYLSMF-SSKESQRGMGYMPKRGLEVNKCEIARFYKL 340 (402)
T ss_dssp -CCSSCEEEEEETTTTEEEEEETTCSCEEEEEECSSTT---CEEEEEEE-CCSSCCSEEEECCGGGSCGGGTEEEEEEEE
T ss_pred -CCCceeEEEEcCCCCEEEEEEcCCCeEEEEEecCCCc---ceEeeccc-ccCCcccceEEecccccceecceeEEEEEc
Confidence 12346789999999 8888887788898888886631 13333322 122456899999998877765444444343
Q ss_pred CCC
Q 020019 277 SDG 279 (332)
Q Consensus 277 ~dg 279 (332)
.++
T Consensus 341 ~~~ 343 (402)
T 2aq5_A 341 HER 343 (402)
T ss_dssp ETT
T ss_pred CCC
Confidence 444
|
| >3ott_A Two-component system sensor histidine kinase; beta-propeller, beta-sandwich, transcription; HET: TBR; 2.30A {Bacteroides thetaiotaomicron} PDB: 3va6_A | Back alignment and structure |
|---|
Probab=98.71 E-value=5e-06 Score=84.39 Aligned_cols=235 Identities=12% Similarity=0.100 Sum_probs=135.0
Q ss_pred cceEEcCCCCEEEEEecCCeEEEEECCCCCCCccceeeeEEecc----cCcCCCccceEEEeCCCCeEEEEEeCcCCCcc
Q 020019 48 ECAKWDDSGRRFIVSFLDGGIGQVAVPDDYPPGTVLEEVTLVKD----LELTGNGSLGLVLDHPRNRLLVVAADVFGNKY 123 (332)
Q Consensus 48 egia~d~~g~~~~~~~~~g~I~~vd~~~~~~~~~~~~~~~~~~~----~~~~~~~~~gi~vd~~~g~l~v~~~~~~~~~~ 123 (332)
..+..|++|++|++. .+.|+++++.+++.. . ..+... ..+..+.+..|..|.+ |+||++..
T Consensus 327 ~~i~~D~~g~lWiGt--~~Gl~~~~~~~~~~~----~-~~~~~~~~~~~~l~~~~v~~i~~d~~-g~lWigt~------- 391 (758)
T 3ott_A 327 YSLFRDSKGFYWFGG--ANGLIRFTDPAGERH----D-AIWYRMGDKTYPLSHNRIRHIYEDKE-QQLWIATD------- 391 (758)
T ss_dssp EEEEECTTCCEEEEE--TTEEEEESCTTSSCC----C-CEEECTTCSSSCCSCSCEEEEEECTT-SCEEEEET-------
T ss_pred EEEEEcCCCCEEEee--CCcceeecccccccc----e-eEEeccCCcCCCCCCCceEEEEECCC-CCEEEEeC-------
Confidence 456778999999886 356889987654210 0 112211 1122235678888886 99999873
Q ss_pred ceEEEEECCCCcEEEEEecCCCCC-CCCCccceEECCCCcEEEEeCCCCeEEEEcCCC------c-eE--EEec-CCCCC
Q 020019 124 SAVAAYDLSTWNRLFLTQLSGPSD-GKSCADDVTVDAEGNAYVTDVTGSKIWKVGVKG------E-FL--SIIS-SPLFT 192 (332)
Q Consensus 124 ~~l~~~d~~~g~~~~~~~l~~~~~-~~~~~ndiavd~dG~lyvtd~~~~~I~~v~~~g------~-~~--~~~~-~~~~~ 192 (332)
+.|.+||+++++............ .......+..|++|+||++... +.|++++++. + .. .... ...+
T Consensus 392 ~GL~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~d~~g~lWigT~~-~Gl~~~~~~~~~~~~~~~~~~~~~~~~~~~l- 469 (758)
T 3ott_A 392 GSINRYDYATRQFIHYNIVDNTGTYNTNWTYYIFEDTAGQLWISTCL-GGIFVVDKHKLMQSTSGQYIAEQNYSVHNGL- 469 (758)
T ss_dssp TEEEEEETTTTEEEEEEEECCC--CBSSSEEEEEECTTSEEEEEESS-SCEEEEEHHHHHHCCSSEEECSEEECGGGTC-
T ss_pred CcHhhcCcCCCcEEEeecCCCcCCCCCceEEEEEEcCCCCEEEEECC-CceEEEccccccccCCcceeccccccccccc-
Confidence 368999998887654322111000 1134567888999999998653 5688888652 1 11 0010 0001
Q ss_pred CcccccCccccCeEEEccCceEEEEeCCCCeEEEEeCCCCCCccceeEEEEecCCC-CCCCCeEEEeCCCeEEEEeCCce
Q 020019 193 PKEWYKNLVGLNGIVYHPDGFLIVIHTFSGNLFKIDIVDGVGEGEEIKLIRVAGGP-LSFGDGLELLSPTKLVVAGNPSA 271 (332)
Q Consensus 193 ~p~~~~~~~~~nGi~~~~dG~Lyva~~~~~~i~~id~~~~~~~~~~~~~v~~~g~~-~~~pdGi~~~~dG~l~va~~~~~ 271 (332)
.......|..+++|.||++....+-|+++++.++ ..+.+...+.. ...+..+..|++|+||++...+.
T Consensus 470 ------~~~~i~~i~~d~~g~lWi~~~t~~Gl~~~d~~~~-----~~~~~~~~~~~~~~~~~~i~~d~~g~lWigt~~Gl 538 (758)
T 3ott_A 470 ------SGMFINQIIPDNEGNVWVLLYNNKGIDKINPRTR-----EVTKLFADELTGEKSPNYLLCDEDGLLWVGFHGGV 538 (758)
T ss_dssp ------SCSCEEEEEECTTSCEEEEETTCSSEEEEETTTT-----EEEEECTTTSCGGGCEEEEEECTTSCEEEEETTEE
T ss_pred ------ccceeeeEEEcCCCCEEEEccCCCCcEEEeCCCC-----ceEEecCCCcCCCcccceEEECCCCCEEEEecCce
Confidence 0123567889999999983222345999999876 34444321100 12467888999999999987643
Q ss_pred EEEEcCCCceEEEEE-eeecCCCcccceEEEEECCeEEEEEecC
Q 020019 272 RLVESSDGWETAAVV-AKFSGPVHRLATAATVKDGRVYLNHMLG 314 (332)
Q Consensus 272 ~~v~~~dg~~~~~~~-~~~~~~~~~~pt~va~~~g~lyv~~~~g 314 (332)
. ...+...+..... ..+ + .....++..++|+||++..-|
T Consensus 539 ~-~~~~~~~~~~~~~~~gl--~-~~~i~~i~~~~g~lWi~t~~G 578 (758)
T 3ott_A 539 M-RINPKDESQQSISFGSF--S-NNEILSMTCVKNSIWVSTTNG 578 (758)
T ss_dssp E-EECC--CCCCBCCCCC------CCEEEEEEETTEEEEEESSC
T ss_pred E-EEecCCCceEEecccCC--C-ccceEEEEECCCCEEEECCCC
Confidence 3 3333321111110 011 1 123345555789999976544
|
| >4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.70 E-value=3.5e-06 Score=77.38 Aligned_cols=186 Identities=10% Similarity=0.051 Sum_probs=122.4
Q ss_pred cccceEEcCCCCEEEEEecCCeEEEEECCCCCCCccceeeeEEecccCcCCCccceEEEeCCCCeEEEEEeCcCCCccce
Q 020019 46 FRECAKWDDSGRRFIVSFLDGGIGQVAVPDDYPPGTVLEEVTLVKDLELTGNGSLGLVLDHPRNRLLVVAADVFGNKYSA 125 (332)
Q Consensus 46 ~pegia~d~~g~~~~~~~~~g~I~~vd~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~vd~~~g~l~v~~~~~~~~~~~~ 125 (332)
....++++++|+.+++...++.|..+|..+++. .. ++.... .....+++.++...++++... .+.
T Consensus 129 ~V~~v~~spdg~~l~sgs~d~~i~iwd~~~~~~----~~--~~~~h~----~~V~~~~~~~~~~~~l~s~s~-----D~~ 193 (344)
T 4gqb_B 129 IVSTVSVLSSGTQAVSGSKDICIKVWDLAQQVV----LS--SYRAHA----AQVTCVAASPHKDSVFLSCSE-----DNR 193 (344)
T ss_dssp CEEEEEECTTSSEEEEEETTSCEEEEETTTTEE----EE--EECCCS----SCEEEEEECSSCTTEEEEEET-----TSC
T ss_pred CEEEEEECCCCCEEEEEeCCCeEEEEECCCCcE----EE--EEcCcC----CceEEEEecCCCCCceeeecc-----ccc
Confidence 345789999999888888889999999887652 11 222111 256789998874456655432 356
Q ss_pred EEEEECCCCcEEEEEecCCCCCCCCCccceEECCC-CcEEEEeCCCCeEEEEcCC-CceEEEecCCCCCCcccccCcccc
Q 020019 126 VAAYDLSTWNRLFLTQLSGPSDGKSCADDVTVDAE-GNAYVTDVTGSKIWKVGVK-GEFLSIISSPLFTPKEWYKNLVGL 203 (332)
Q Consensus 126 l~~~d~~~g~~~~~~~l~~~~~~~~~~ndiavd~d-G~lyvtd~~~~~I~~v~~~-g~~~~~~~~~~~~~p~~~~~~~~~ 203 (332)
|..||.++++....+... . .....+.+++.++ ++++++-+..+.|..+|.. ++....+.. .....
T Consensus 194 v~iwd~~~~~~~~~~~~~--~-~~~~~~~~~~~p~~~~~l~sg~~dg~v~~wd~~~~~~~~~~~~----------h~~~v 260 (344)
T 4gqb_B 194 ILLWDTRCPKPASQIGCS--A-PGYLPTSLAWHPQQSEVFVFGDENGTVSLVDTKSTSCVLSSAV----------HSQCV 260 (344)
T ss_dssp EEEEETTSSSCEEECC-------CCCEEEEEECSSCTTEEEEEETTSEEEEEESCC--CCEEEEC----------CSSCE
T ss_pred cccccccccceeeeeecc--e-eeccceeeeecCCCCcceEEeccCCcEEEEECCCCcEEEEEcC----------CCCCE
Confidence 889999988876543321 1 1245678999986 5788887788889888875 443322211 11235
Q ss_pred CeEEEccCc-eEEEEeCCCCeEEEEeCCCCCCccceeEEEEecCCCCCCCCeEEEeCCCe-EEEEe
Q 020019 204 NGIVYHPDG-FLIVIHTFSGNLFKIDIVDGVGEGEEIKLIRVAGGPLSFGDGLELLSPTK-LVVAG 267 (332)
Q Consensus 204 nGi~~~~dG-~Lyva~~~~~~i~~id~~~~~~~~~~~~~v~~~g~~~~~pdGi~~~~dG~-l~va~ 267 (332)
+.|+|+||| .+.++-...++|..+|..++ ... ...+ +......+++.|+|. |+++.
T Consensus 261 ~~v~fsp~g~~~lasgs~D~~i~vwd~~~~-----~~~--~~~~-H~~~V~~v~~sp~~~~llas~ 318 (344)
T 4gqb_B 261 TGLVFSPHSVPFLASLSEDCSLAVLDSSLS-----ELF--RSQA-HRDFVRDATWSPLNHSLLTTV 318 (344)
T ss_dssp EEEEECSSSSCCEEEEETTSCEEEECTTCC-----EEE--EECC-CSSCEEEEEECSSSTTEEEEE
T ss_pred EEEEEccCCCeEEEEEeCCCeEEEEECCCC-----cEE--EEcC-CCCCEEEEEEeCCCCeEEEEE
Confidence 789999998 67777777888988888866 232 2332 334567899998875 66553
|
| >3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.70 E-value=3.5e-05 Score=69.51 Aligned_cols=194 Identities=13% Similarity=0.093 Sum_probs=121.7
Q ss_pred CccccceEEcCCCCEEEEEecCCeEEEEECCCCCCCccceeeeEEecccCcCCCccceEEEeCCCCeEEEEEeCcCCCcc
Q 020019 44 SFFRECAKWDDSGRRFIVSFLDGGIGQVAVPDDYPPGTVLEEVTLVKDLELTGNGSLGLVLDHPRNRLLVVAADVFGNKY 123 (332)
Q Consensus 44 ~~~pegia~d~~g~~~~~~~~~g~I~~vd~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~vd~~~g~l~v~~~~~~~~~~ 123 (332)
......++++++++.+++...++.|..++..+++. .. .+. .. ..+..+.++++ ++.+++.........
T Consensus 74 ~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~----~~--~~~-~~----~~v~~~~~~~~-~~~l~~~~~~~~~~~ 141 (369)
T 3zwl_B 74 TGTIWSIDVDCFTKYCVTGSADYSIKLWDVSNGQC----VA--TWK-SP----VPVKRVEFSPC-GNYFLAILDNVMKNP 141 (369)
T ss_dssp SSCEEEEEECTTSSEEEEEETTTEEEEEETTTCCE----EE--EEE-CS----SCEEEEEECTT-SSEEEEEECCBTTBC
T ss_pred CCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcE----EE--Eee-cC----CCeEEEEEccC-CCEEEEecCCccCCC
Confidence 33556789999999888877789999999887652 11 222 11 25788999997 655554432100012
Q ss_pred ceEEEEECCCCcEEEEEe-cCC-C------CCCCCCccceEECCCCcEEEEeCCCCeEEEEcCCC--ceEEEecCCCCCC
Q 020019 124 SAVAAYDLSTWNRLFLTQ-LSG-P------SDGKSCADDVTVDAEGNAYVTDVTGSKIWKVGVKG--EFLSIISSPLFTP 193 (332)
Q Consensus 124 ~~l~~~d~~~g~~~~~~~-l~~-~------~~~~~~~ndiavd~dG~lyvtd~~~~~I~~v~~~g--~~~~~~~~~~~~~ 193 (332)
+.+..||.+.++...... ... + .........++++++|+.+++-...+.|..++... +....+...
T Consensus 142 g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~---- 217 (369)
T 3zwl_B 142 GSINIYEIERDSATHELTKVSEEPIHKIITHEGLDAATVAGWSTKGKYIIAGHKDGKISKYDVSNNYEYVDSIDLH---- 217 (369)
T ss_dssp CEEEEEEEEECTTTCCEEEECSSCSEEEECCTTCCCEEEEEECGGGCEEEEEETTSEEEEEETTTTTEEEEEEECC----
T ss_pred CEEEEEEecCCccceeecccccceeeeccCCcCccceeEEEEcCCCCEEEEEcCCCEEEEEECCCCcEeEEEEecC----
Confidence 568888876543211110 000 0 11123677899999998777777789999998764 333322211
Q ss_pred cccccCccccCeEEEccCceEEEEeCCCCeEEEEeCCCCCCccceeEEEEecCCCCCCCCeEEEeCCCeEEEEe
Q 020019 194 KEWYKNLVGLNGIVYHPDGFLIVIHTFSGNLFKIDIVDGVGEGEEIKLIRVAGGPLSFGDGLELLSPTKLVVAG 267 (332)
Q Consensus 194 p~~~~~~~~~nGi~~~~dG~Lyva~~~~~~i~~id~~~~~~~~~~~~~v~~~g~~~~~pdGi~~~~dG~l~va~ 267 (332)
......++++++|.++++-...+.|..+++.+++ .+..+... .....+++.++|+.+++.
T Consensus 218 ------~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~----~~~~~~~~----~~~~~~~~~~~~~~l~~~ 277 (369)
T 3zwl_B 218 ------EKSISDMQFSPDLTYFITSSRDTNSFLVDVSTLQ----VLKKYETD----CPLNTAVITPLKEFIILG 277 (369)
T ss_dssp ------SSCEEEEEECTTSSEEEEEETTSEEEEEETTTCC----EEEEEECS----SCEEEEEECSSSSEEEEE
T ss_pred ------CCceeEEEECCCCCEEEEecCCceEEEEECCCCc----eeeeecCC----CCceeEEecCCCceEEEe
Confidence 1235789999999444455567889999998762 44444422 345678899988866664
|
| >1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.68 E-value=8.4e-06 Score=75.17 Aligned_cols=186 Identities=8% Similarity=-0.007 Sum_probs=123.3
Q ss_pred ccccceEEcCCCCEEEEEecCCeEEEEECCCCCCCccceeeeEEecccCcC------------CCccceEEEeCCCCeEE
Q 020019 45 FFRECAKWDDSGRRFIVSFLDGGIGQVAVPDDYPPGTVLEEVTLVKDLELT------------GNGSLGLVLDHPRNRLL 112 (332)
Q Consensus 45 ~~pegia~d~~g~~~~~~~~~g~I~~vd~~~~~~~~~~~~~~~~~~~~~~~------------~~~~~gi~vd~~~g~l~ 112 (332)
.....++++++++.+++...++.|..++..+++. .. .+. ..... +.....+.+.++ +.++
T Consensus 150 ~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~----~~--~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~ 221 (425)
T 1r5m_A 150 APIVSVKWNKDGTHIISMDVENVTILWNVISGTV----MQ--HFE-LKETGGSSINAENHSGDGSLGVDVEWVDD-DKFV 221 (425)
T ss_dssp SCEEEEEECTTSSEEEEEETTCCEEEEETTTTEE----EE--EEC-CC---------------CCCBSCCEEEET-TEEE
T ss_pred ccEEEEEECCCCCEEEEEecCCeEEEEECCCCcE----EE--Eee-ccccCccceeeccccCCcceeeEEEEcCC-CEEE
Confidence 3556799999999888777789999999876652 11 121 11100 001678888885 7766
Q ss_pred EEEeCcCCCccceEEEEECCCCcEEEEEecCCCCCCCCCccceEECCCCcEEEEeCCCCeEEEEcCC-CceEEEecCCCC
Q 020019 113 VVAADVFGNKYSAVAAYDLSTWNRLFLTQLSGPSDGKSCADDVTVDAEGNAYVTDVTGSKIWKVGVK-GEFLSIISSPLF 191 (332)
Q Consensus 113 v~~~~~~~~~~~~l~~~d~~~g~~~~~~~l~~~~~~~~~~ndiavd~dG~lyvtd~~~~~I~~v~~~-g~~~~~~~~~~~ 191 (332)
++.. .+.+..||.++++....... .......+++.++|+.+++-...+.|..++.. ++....+..
T Consensus 222 ~~~~------~g~i~~~d~~~~~~~~~~~~-----~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~--- 287 (425)
T 1r5m_A 222 IPGP------KGAIFVYQITEKTPTGKLIG-----HHGPISVLEFNDTNKLLLSASDDGTLRIWHGGNGNSQNCFYG--- 287 (425)
T ss_dssp EECG------GGCEEEEETTCSSCSEEECC-----CSSCEEEEEEETTTTEEEEEETTSCEEEECSSSBSCSEEECC---
T ss_pred EEcC------CCeEEEEEcCCCceeeeecc-----CCCceEEEEECCCCCEEEEEcCCCEEEEEECCCCccceEecC---
Confidence 6543 46799999998776543321 12456789999999888887788889888865 333222211
Q ss_pred CCcccccCccccCeEEEccCceEEEEeCCCCeEEEEeCCCCCCccceeEEEEecCCCCCCCCeEEEeCCCeEEEEe
Q 020019 192 TPKEWYKNLVGLNGIVYHPDGFLIVIHTFSGNLFKIDIVDGVGEGEEIKLIRVAGGPLSFGDGLELLSPTKLVVAG 267 (332)
Q Consensus 192 ~~p~~~~~~~~~nGi~~~~dG~Lyva~~~~~~i~~id~~~~~~~~~~~~~v~~~g~~~~~pdGi~~~~dG~l~va~ 267 (332)
.......++++++| ++++-...+.|..+++.++ +.+..+... ......+++.++|+++++.
T Consensus 288 -------~~~~i~~~~~~~~~-~l~~~~~d~~i~i~d~~~~----~~~~~~~~~---~~~i~~~~~s~~~~~l~~~ 348 (425)
T 1r5m_A 288 -------HSQSIVSASWVGDD-KVISCSMDGSVRLWSLKQN----TLLALSIVD---GVPIFAGRISQDGQKYAVA 348 (425)
T ss_dssp -------CSSCEEEEEEETTT-EEEEEETTSEEEEEETTTT----EEEEEEECT---TCCEEEEEECTTSSEEEEE
T ss_pred -------CCccEEEEEECCCC-EEEEEeCCCcEEEEECCCC----cEeEecccC---CccEEEEEEcCCCCEEEEE
Confidence 11245789999999 6666667889999999876 234434322 2356688999998877764
|
| >4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis} | Back alignment and structure |
|---|
Probab=98.68 E-value=1.4e-06 Score=80.24 Aligned_cols=205 Identities=13% Similarity=0.151 Sum_probs=119.6
Q ss_pred cccceEEcCCCCEEEEEe------cCCeEEEEECCCCCCCccceeeeEEecccCcCCCccceEEEeCCCCeEEEEEeCcC
Q 020019 46 FRECAKWDDSGRRFIVSF------LDGGIGQVAVPDDYPPGTVLEEVTLVKDLELTGNGSLGLVLDHPRNRLLVVAADVF 119 (332)
Q Consensus 46 ~pegia~d~~g~~~~~~~------~~g~I~~vd~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~vd~~~g~l~v~~~~~~ 119 (332)
....++|+|||+++++.. +++.|+.++..++... . .+......-..+...+++.++ ++++++..+
T Consensus 44 ~V~~v~fSpDG~~las~s~d~~~~wd~~v~~~~~~~~~~~----~--~~~~~~~~~~~~V~~~~~s~d-~~~l~~s~d-- 114 (357)
T 4g56_B 44 QIGAVRYRRDGALLLAASSLSSRTWGGSIWVFKDPEGAPN----E--SLCTAGVQTEAGVTDVAWVSE-KGILVASDS-- 114 (357)
T ss_dssp EEEEEEECSSSCEEEEEECSSSSSCCEEEEEESSCC---C----G--GGCSEEEECSSCEEEEEEETT-TEEEEEETT--
T ss_pred CEEEEEECCCCCEEEEEcCCCCccccCeEEEEECCCCCcc----e--eEecccCCCCCCEEEEEEcCC-CCEEEEECC--
Confidence 456799999999888763 3678888876655421 1 111000000125788999997 887776543
Q ss_pred CCccceEEEEECCCCcEEEEEecCCCCCCCCCccceEECCCCcEEEEeCCCCeEEEEcCC-CceEEEecCCCCCCccccc
Q 020019 120 GNKYSAVAAYDLSTWNRLFLTQLSGPSDGKSCADDVTVDAEGNAYVTDVTGSKIWKVGVK-GEFLSIISSPLFTPKEWYK 198 (332)
Q Consensus 120 ~~~~~~l~~~d~~~g~~~~~~~l~~~~~~~~~~ndiavd~dG~lyvtd~~~~~I~~v~~~-g~~~~~~~~~~~~~p~~~~ 198 (332)
+.|.+||..+++......+.. .......+.+++.|+|+.+++-+..+.|..+|.. ++....+...
T Consensus 115 ----g~v~lWd~~~~~~~~~~~~~~-~~h~~~V~~v~~spdg~~l~sgs~dg~v~iwd~~~~~~~~~~~~h--------- 180 (357)
T 4g56_B 115 ----GAVELWEILEKESLLVNKFAK-YEHDDIVKTLSVFSDGTQAVSGGKDFSVKVWDLSQKAVLKSYNAH--------- 180 (357)
T ss_dssp ----SCEEEC--------CCCCEEE-CCCSSCEEEEEECSSSSEEEEEETTSCEEEEETTTTEEEEEECCC---------
T ss_pred ----CEEEEeeccccceeEEEeecc-CCCCCCEEEEEECCCCCEEEEEeCCCeEEEEECCCCcEEEEEcCC---------
Confidence 468889998776432211110 0112456789999999988888888889888876 4443333211
Q ss_pred CccccCeEEEccCc-eEEEEeCCCCeEEEEeCCCCCCccceeEEEEecCCCCCCCCeEEEeCC-CeEEEEe--CCceEEE
Q 020019 199 NLVGLNGIVYHPDG-FLIVIHTFSGNLFKIDIVDGVGEGEEIKLIRVAGGPLSFGDGLELLSP-TKLVVAG--NPSARLV 274 (332)
Q Consensus 199 ~~~~~nGi~~~~dG-~Lyva~~~~~~i~~id~~~~~~~~~~~~~v~~~g~~~~~pdGi~~~~d-G~l~va~--~~~~~~v 274 (332)
....+.+++++++ .++++-...++|..+|+.+++ ....+... .....+..+++.|+ +.++++. ...+++.
T Consensus 181 -~~~v~~v~~s~~~~~~~~s~~~dg~v~~wd~~~~~----~~~~~~~~-~~~~~v~~v~~sp~~~~~la~g~~d~~i~~w 254 (357)
T 4g56_B 181 -SSEVNCVAACPGKDTIFLSCGEDGRILLWDTRKPK----PATRIDFC-ASDTIPTSVTWHPEKDDTFACGDETGNVSLV 254 (357)
T ss_dssp -SSCEEEEEECTTCSSCEEEEETTSCEEECCTTSSS----CBCBCCCT-TCCSCEEEEEECTTSTTEEEEEESSSCEEEE
T ss_pred -CCCEEEEEEccCCCceeeeeccCCceEEEECCCCc----eeeeeeec-cccccccchhhhhcccceEEEeecccceeEE
Confidence 1235789999998 677777778889888888663 22222222 12234567888876 4566553 2334544
Q ss_pred EcCCC
Q 020019 275 ESSDG 279 (332)
Q Consensus 275 ~~~dg 279 (332)
...++
T Consensus 255 d~~~~ 259 (357)
T 4g56_B 255 NIKNP 259 (357)
T ss_dssp ESSCG
T ss_pred ECCCC
Confidence 55554
|
| >3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R* | Back alignment and structure |
|---|
Probab=98.66 E-value=6.3e-05 Score=67.75 Aligned_cols=183 Identities=10% Similarity=0.115 Sum_probs=117.3
Q ss_pred cccceEEcCCCCEEEEEecCCeEEEEECCCCCCCccceeeeEEecccCcCCCccceEEEeCCCCeEEEEEeCcCCCccce
Q 020019 46 FRECAKWDDSGRRFIVSFLDGGIGQVAVPDDYPPGTVLEEVTLVKDLELTGNGSLGLVLDHPRNRLLVVAADVFGNKYSA 125 (332)
Q Consensus 46 ~pegia~d~~g~~~~~~~~~g~I~~vd~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~vd~~~g~l~v~~~~~~~~~~~~ 125 (332)
....+++.++|+.+++...++.|..+|..+++. .. .+.... .....+.++++ +.++++... .+.
T Consensus 67 ~v~~~~~s~dg~~l~s~s~D~~v~~wd~~~~~~----~~--~~~~h~----~~v~~~~~~~~-~~~l~s~s~-----D~~ 130 (319)
T 3frx_A 67 IVQDCTLTADGAYALSASWDKTLRLWDVATGET----YQ--RFVGHK----SDVMSVDIDKK-ASMIISGSR-----DKT 130 (319)
T ss_dssp CEEEEEECTTSSEEEEEETTSEEEEEETTTTEE----EE--EEECCS----SCEEEEEECTT-SCEEEEEET-----TSC
T ss_pred cEEEEEECCCCCEEEEEeCCCEEEEEECCCCCe----eE--EEccCC----CcEEEEEEcCC-CCEEEEEeC-----CCe
Confidence 445689999999888888899999999887652 11 232111 25688999996 665555432 356
Q ss_pred EEEEECCCCcEEEEEecCCCCCCCCCccceEECC------CCcEEEEeCCCCeEEEEcCCC-ceEEEecCCCCCCccccc
Q 020019 126 VAAYDLSTWNRLFLTQLSGPSDGKSCADDVTVDA------EGNAYVTDVTGSKIWKVGVKG-EFLSIISSPLFTPKEWYK 198 (332)
Q Consensus 126 l~~~d~~~g~~~~~~~l~~~~~~~~~~ndiavd~------dG~lyvtd~~~~~I~~v~~~g-~~~~~~~~~~~~~p~~~~ 198 (332)
+.+||.+..... .+.+. ......+++.| ++..+++-+..+.|...+... +....+..
T Consensus 131 i~vwd~~~~~~~---~~~~h---~~~v~~~~~~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~---------- 194 (319)
T 3frx_A 131 IKVWTIKGQCLA---TLLGH---NDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQFQIEADFIG---------- 194 (319)
T ss_dssp EEEEETTSCEEE---EECCC---SSCEEEEEECCC------CCEEEEEETTSCEEEEETTTTEEEEEECC----------
T ss_pred EEEEECCCCeEE---EEecc---CCcEEEEEEccCCCCCCCccEEEEEeCCCEEEEEECCcchhheeecC----------
Confidence 888999753332 22111 23345566665 344677777788888888653 32221111
Q ss_pred CccccCeEEEccCceEEEEeCCCCeEEEEeCCCCCCccceeEEEEecCCCCCCCCeEEEeCCCeEEEEeC
Q 020019 199 NLVGLNGIVYHPDGFLIVIHTFSGNLFKIDIVDGVGEGEEIKLIRVAGGPLSFGDGLELLSPTKLVVAGN 268 (332)
Q Consensus 199 ~~~~~nGi~~~~dG~Lyva~~~~~~i~~id~~~~~~~~~~~~~v~~~g~~~~~pdGi~~~~dG~l~va~~ 268 (332)
.....+.++++|+|.++++-...+.|..+|+.++ +.+..+... .....+++.++|.++++..
T Consensus 195 h~~~v~~~~~sp~g~~l~s~~~dg~i~iwd~~~~----~~~~~~~~~----~~v~~~~~sp~~~~la~~~ 256 (319)
T 3frx_A 195 HNSNINTLTASPDGTLIASAGKDGEIMLWNLAAK----KAMYTLSAQ----DEVFSLAFSPNRYWLAAAT 256 (319)
T ss_dssp CCSCEEEEEECTTSSEEEEEETTCEEEEEETTTT----EEEEEEECC----SCEEEEEECSSSSEEEEEE
T ss_pred CCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCC----cEEEEecCC----CcEEEEEEcCCCCEEEEEc
Confidence 1124578999999966666667888999998876 234444322 3456899999988777753
|
| >3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp} | Back alignment and structure |
|---|
Probab=98.66 E-value=5.2e-06 Score=76.32 Aligned_cols=187 Identities=11% Similarity=-0.002 Sum_probs=108.0
Q ss_pred ceEEcCCCCEEEEEecCCeEEEEECCCCCCCccceeeeEEecccCcCCCccceEEEeCCCCeEEEEEeCcC---------
Q 020019 49 CAKWDDSGRRFIVSFLDGGIGQVAVPDDYPPGTVLEEVTLVKDLELTGNGSLGLVLDHPRNRLLVVAADVF--------- 119 (332)
Q Consensus 49 gia~d~~g~~~~~~~~~g~I~~vd~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~vd~~~g~l~v~~~~~~--------- 119 (332)
+++++|+|+.++....++.|++++..+++. ..+...+... .......++++ ++++++.....
T Consensus 85 ~~~~spdg~~l~~~~~~~~l~~~d~~~g~~-------~~~~~~~~~~-~~~~~~~~~~d-g~~l~~~~~~~~~~~~~~~~ 155 (388)
T 3pe7_A 85 GGFLSPDDDALFYVKDGRNLMRVDLATLEE-------NVVYQVPAEW-VGYGTWVANSD-CTKLVGIEIRREDWVPLTDW 155 (388)
T ss_dssp SCEECTTSSEEEEEETTTEEEEEETTTCCE-------EEEEECCTTE-EEEEEEEECTT-SSEEEEEEEEGGGCCCCCSH
T ss_pred ceEEcCCCCEEEEEeCCCeEEEEECCCCcc-------eeeeechhhc-ccccceeECCC-CCeeccccccCccccccccc
Confidence 679999998776665567999999987762 1233222210 01122334675 77665432100
Q ss_pred --------CCccceEEEEECCCCcEEEEEecCCCCCCCCCccceEECC-CCc-EE-EEeCC----CCeEEEEcCCCceEE
Q 020019 120 --------GNKYSAVAAYDLSTWNRLFLTQLSGPSDGKSCADDVTVDA-EGN-AY-VTDVT----GSKIWKVGVKGEFLS 184 (332)
Q Consensus 120 --------~~~~~~l~~~d~~~g~~~~~~~l~~~~~~~~~~ndiavd~-dG~-ly-vtd~~----~~~I~~v~~~g~~~~ 184 (332)
......|+.+|+++++....... ....+++++.| ||+ |+ +.+.. ...|+.++.+++..+
T Consensus 156 ~~~~~~~~~~~~~~l~~~d~~~g~~~~l~~~------~~~~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~~~~~ 229 (388)
T 3pe7_A 156 KKFHEFYFTKPCCRLMRVDLKTGESTVILQE------NQWLGHPIYRPYDDSTVAFCHEGPHDLVDARMWLINEDGTNMR 229 (388)
T ss_dssp HHHHHHGGGCCCEEEEEEETTTCCEEEEEEE------SSCEEEEEEETTEEEEEEEEECSCTTTSSCSEEEEETTSCCCE
T ss_pred chhhhhhccCCcceEEEEECCCCceEEeecC------CccccccEECCCCCCEEEEEEecCCCCCcceEEEEeCCCCceE
Confidence 01235799999999887654432 23457899999 885 54 44322 458999998765333
Q ss_pred EecCCCCCCcccccCccccCeEEEccCc-eE-EEEeCCCC---eEEEEeCCCCCCccceeEEE-EecC--CCCCCCCeEE
Q 020019 185 IISSPLFTPKEWYKNLVGLNGIVYHPDG-FL-IVIHTFSG---NLFKIDIVDGVGEGEEIKLI-RVAG--GPLSFGDGLE 256 (332)
Q Consensus 185 ~~~~~~~~~p~~~~~~~~~nGi~~~~dG-~L-yva~~~~~---~i~~id~~~~~~~~~~~~~v-~~~g--~~~~~pdGi~ 256 (332)
.+..... .......+|+||| .| |+++.... .|+.+++.+++ .+.+ ..++ .....+++++
T Consensus 230 ~l~~~~~--------~~~~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~g~-----~~~l~~~~~~~~~~~~~~~~~ 296 (388)
T 3pe7_A 230 KVKTHAE--------GESCTHEFWVPDGSALVYVSYLKGSPDRFIYSADPETLE-----NRQLTSMPACSHLMSNYDGSL 296 (388)
T ss_dssp ESCCCCT--------TEEEEEEEECTTSSCEEEEEEETTCCCEEEEEECTTTCC-----EEEEEEECCEEEEEECTTSSE
T ss_pred EeeeCCC--------CcccccceECCCCCEEEEEecCCCCCcceEEEEecCCCc-----eEEEEcCCCceeeeecCCCCe
Confidence 2211100 0123467899999 67 55554333 39999999873 2222 2221 0012367788
Q ss_pred EeCCCeE
Q 020019 257 LLSPTKL 263 (332)
Q Consensus 257 ~~~dG~l 263 (332)
+.+||+.
T Consensus 297 ~spdg~~ 303 (388)
T 3pe7_A 297 MVGDGSD 303 (388)
T ss_dssp EEEEECC
T ss_pred EccCCCc
Confidence 8888763
|
| >2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus} | Back alignment and structure |
|---|
Probab=98.66 E-value=8.8e-05 Score=67.90 Aligned_cols=231 Identities=13% Similarity=0.130 Sum_probs=136.8
Q ss_pred cccceEEcCCCCEEEEEecCCeEEEEECCCCCCCccceeeeEEecccCcCCCccceEEEeCCCCeEEEEEeCcCCCccce
Q 020019 46 FRECAKWDDSGRRFIVSFLDGGIGQVAVPDDYPPGTVLEEVTLVKDLELTGNGSLGLVLDHPRNRLLVVAADVFGNKYSA 125 (332)
Q Consensus 46 ~pegia~d~~g~~~~~~~~~g~I~~vd~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~vd~~~g~l~v~~~~~~~~~~~~ 125 (332)
....++++|+|+.+++...++.+..++...............+.... .....+.+.++...|+.+.. .+.
T Consensus 108 ~v~~~~~sp~g~~lasg~~d~~i~v~~~~~~~~~~~~~~~~~~~~h~----~~v~~~~~~~~~~~l~t~s~------D~~ 177 (354)
T 2pbi_B 108 WVMACAYAPSGCAIACGGLDNKCSVYPLTFDKNENMAAKKKSVAMHT----NYLSACSFTNSDMQILTASG------DGT 177 (354)
T ss_dssp CCCEEEECTTSSEEEEESTTSEEEEEECCCCTTCCSGGGCEEEEECS----SCEEEEEECSSSSEEEEEET------TSE
T ss_pred CEEEEEECCCCCEEEEeeCCCCEEEEEEeccccccccccceeeeccC----CcEEEEEEeCCCCEEEEEeC------CCc
Confidence 45678999999988877778888777754332100000000111111 24578889887344554443 356
Q ss_pred EEEEECCCCcEEEEEecCCCCCCCCCccceEECC--CCcEEEEeCCCCeEEEEcCC-CceEEEecCCCCCCcccccCccc
Q 020019 126 VAAYDLSTWNRLFLTQLSGPSDGKSCADDVTVDA--EGNAYVTDVTGSKIWKVGVK-GEFLSIISSPLFTPKEWYKNLVG 202 (332)
Q Consensus 126 l~~~d~~~g~~~~~~~l~~~~~~~~~~ndiavd~--dG~lyvtd~~~~~I~~v~~~-g~~~~~~~~~~~~~p~~~~~~~~ 202 (332)
+..||.++++....+.- . ......+++.+ +|+.+++-+..+.|..+|.. ++....+.. ....
T Consensus 178 v~lwd~~~~~~~~~~~~--h---~~~v~~~~~~~~~~g~~l~sgs~Dg~v~~wd~~~~~~~~~~~~----------h~~~ 242 (354)
T 2pbi_B 178 CALWDVESGQLLQSFHG--H---GADVLCLDLAPSETGNTFVSGGCDKKAMVWDMRSGQCVQAFET----------HESD 242 (354)
T ss_dssp EEEEETTTCCEEEEEEC--C---SSCEEEEEECCCSSCCEEEEEETTSCEEEEETTTCCEEEEECC----------CSSC
T ss_pred EEEEeCCCCeEEEEEcC--C---CCCeEEEEEEeCCCCCEEEEEeCCCeEEEEECCCCcEEEEecC----------CCCC
Confidence 88999999887654432 1 23345566765 57888888888999998865 454333321 1124
Q ss_pred cCeEEEccCceEEEEeCCCCeEEEEeCCCCCCccceeEEEEecCCCCCCCCeEEEeCCCeEEEEeC--CceEEEEcCCCc
Q 020019 203 LNGIVYHPDGFLIVIHTFSGNLFKIDIVDGVGEGEEIKLIRVAGGPLSFGDGLELLSPTKLVVAGN--PSARLVESSDGW 280 (332)
Q Consensus 203 ~nGi~~~~dG~Lyva~~~~~~i~~id~~~~~~~~~~~~~v~~~g~~~~~pdGi~~~~dG~l~va~~--~~~~~v~~~dg~ 280 (332)
.+.++++|+|.++++-...+.|..+|+..+ ..+..+... ........+++.++|+++++.. ...++.....+.
T Consensus 243 v~~v~~~p~~~~l~s~s~D~~v~lwd~~~~----~~~~~~~~~-~~~~~~~~~~~s~~g~~l~~g~~d~~i~vwd~~~~~ 317 (354)
T 2pbi_B 243 VNSVRYYPSGDAFASGSDDATCRLYDLRAD----REVAIYSKE-SIIFGASSVDFSLSGRLLFAGYNDYTINVWDVLKGS 317 (354)
T ss_dssp EEEEEECTTSSEEEEEETTSCEEEEETTTT----EEEEEECCT-TCCSCEEEEEECTTSSEEEEEETTSCEEEEETTTCS
T ss_pred eEEEEEeCCCCEEEEEeCCCeEEEEECCCC----cEEEEEcCC-CcccceeEEEEeCCCCEEEEEECCCcEEEEECCCCc
Confidence 578999999966666667788988998865 123323221 1122455788999998887753 334444555662
Q ss_pred eEEEEEeeecCCCcccceEEEE-ECCeEEEEE
Q 020019 281 ETAAVVAKFSGPVHRLATAATV-KDGRVYLNH 311 (332)
Q Consensus 281 ~~~~~~~~~~~~~~~~pt~va~-~~g~lyv~~ 311 (332)
.. ..+.+ .-...+++++ .+++++++.
T Consensus 318 ~~----~~l~~-h~~~v~~l~~spdg~~l~sg 344 (354)
T 2pbi_B 318 RV----SILFG-HENRVSTLRVSPDGTAFCSG 344 (354)
T ss_dssp EE----EEECC-CSSCEEEEEECTTSSCEEEE
T ss_pred eE----EEEEC-CCCcEEEEEECCCCCEEEEE
Confidence 22 22221 1233577888 666655543
|
| >1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1 | Back alignment and structure |
|---|
Probab=98.66 E-value=3.3e-05 Score=72.29 Aligned_cols=162 Identities=12% Similarity=0.084 Sum_probs=111.0
Q ss_pred EecCCccccceEEcCCCCEEEEEecCCeEEEEECCCCCCCccceeeeEEecccCcCCCccceEEEeCCCCeEEEEEeCcC
Q 020019 40 YHSSSFFRECAKWDDSGRRFIVSFLDGGIGQVAVPDDYPPGTVLEEVTLVKDLELTGNGSLGLVLDHPRNRLLVVAADVF 119 (332)
Q Consensus 40 ~~~~~~~pegia~d~~g~~~~~~~~~g~I~~vd~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~vd~~~g~l~v~~~~~~ 119 (332)
+.+.......++++|+++++++...++.|..+|..+++. .. ++.... ..+..++++++ +.++++...
T Consensus 104 l~gh~~~V~~~~~~p~~~~l~s~s~Dg~i~vwd~~~~~~----~~--~l~~h~----~~V~~v~~~~~-~~~l~sgs~-- 170 (410)
T 1vyh_C 104 LSGHRSPVTRVIFHPVFSVMVSASEDATIKVWDYETGDF----ER--TLKGHT----DSVQDISFDHS-GKLLASCSA-- 170 (410)
T ss_dssp EECCSSCEEEEEECSSSSEEEEEESSSCEEEEETTTCCC----CE--EECCCS----SCEEEEEECTT-SSEEEEEET--
T ss_pred ecccCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcE----EE--EEeccC----CcEEEEEEcCC-CCEEEEEeC--
Confidence 334333556789999999888888899999999887763 11 232111 25788999996 665555432
Q ss_pred CCccceEEEEECCCCcEEEEEecCCCCCCCCCccceEECCCCcEEEEeCCCCeEEEEcCC-CceEEEecCCCCCCccccc
Q 020019 120 GNKYSAVAAYDLSTWNRLFLTQLSGPSDGKSCADDVTVDAEGNAYVTDVTGSKIWKVGVK-GEFLSIISSPLFTPKEWYK 198 (332)
Q Consensus 120 ~~~~~~l~~~d~~~g~~~~~~~l~~~~~~~~~~ndiavd~dG~lyvtd~~~~~I~~v~~~-g~~~~~~~~~~~~~p~~~~ 198 (332)
.+.+..||.++++... .+.+ .......+++.|+|+.+++-+..+.|..+|.. ++....+...
T Consensus 171 ---D~~i~iwd~~~~~~~~--~~~~---h~~~V~~v~~~p~~~~l~s~s~D~~i~~wd~~~~~~~~~~~~h--------- 233 (410)
T 1vyh_C 171 ---DMTIKLWDFQGFECIR--TMHG---HDHNVSSVSIMPNGDHIVSASRDKTIKMWEVQTGYCVKTFTGH--------- 233 (410)
T ss_dssp ---TSCCCEEETTSSCEEE--CCCC---CSSCEEEEEECSSSSEEEEEETTSEEEEEETTTCCEEEEEECC---------
T ss_pred ---CCeEEEEeCCCCceeE--EEcC---CCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCcEEEEEeCC---------
Confidence 3567889998877643 2321 12457789999999988888888999888865 4433322111
Q ss_pred CccccCeEEEccCceEEEEeCCCCeEEEEeCCCC
Q 020019 199 NLVGLNGIVYHPDGFLIVIHTFSGNLFKIDIVDG 232 (332)
Q Consensus 199 ~~~~~nGi~~~~dG~Lyva~~~~~~i~~id~~~~ 232 (332)
....+.++++++|.++++-...+.|..++..++
T Consensus 234 -~~~v~~~~~~~~g~~l~s~s~D~~v~vwd~~~~ 266 (410)
T 1vyh_C 234 -REWVRMVRPNQDGTLIASCSNDQTVRVWVVATK 266 (410)
T ss_dssp -SSCEEEEEECTTSSEEEEEETTSCEEEEETTTC
T ss_pred -CccEEEEEECCCCCEEEEEcCCCeEEEEECCCC
Confidence 123467899999976667677888888888765
|
| >3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B* | Back alignment and structure |
|---|
Probab=98.65 E-value=1.9e-05 Score=72.49 Aligned_cols=209 Identities=11% Similarity=0.061 Sum_probs=133.9
Q ss_pred ecCCccccceEEcCCC-CEEEEEecCCeEEEEECCCCCCCccceeeeEEecccCcCCCccceEEEeCCCCeEEEEEeCcC
Q 020019 41 HSSSFFRECAKWDDSG-RRFIVSFLDGGIGQVAVPDDYPPGTVLEEVTLVKDLELTGNGSLGLVLDHPRNRLLVVAADVF 119 (332)
Q Consensus 41 ~~~~~~pegia~d~~g-~~~~~~~~~g~I~~vd~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~vd~~~g~l~v~~~~~~ 119 (332)
.+.......+++++++ +++++...++.|..++..+++. . ......+ -......+++.++++.++++..
T Consensus 70 ~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~-----~--~~~~~~~-h~~~v~~~~~~~~~~~~l~s~~--- 138 (383)
T 3ei3_B 70 SPFDRRVTSLEWHPTHPTTVAVGSKGGDIILWDYDVQNK-----T--SFIQGMG-PGDAITGMKFNQFNTNQLFVSS--- 138 (383)
T ss_dssp CCCSSCEEEEEECSSCTTEEEEEEBTSCEEEEETTSTTC-----E--EEECCCS-TTCBEEEEEEETTEEEEEEEEE---
T ss_pred cCCCCCEEEEEECCCCCCEEEEEcCCCeEEEEeCCCccc-----c--eeeecCC-cCCceeEEEeCCCCCCEEEEEe---
Confidence 3333456789999999 7777777789999999886653 1 2221111 1135789999984355454443
Q ss_pred CCccceEEEEECCCCcEEEEEecCCCCCCCCCccceEECCCCcEEEEeCCCCeEEEEcCCCceEEEecCCCCCCcccccC
Q 020019 120 GNKYSAVAAYDLSTWNRLFLTQLSGPSDGKSCADDVTVDAEGNAYVTDVTGSKIWKVGVKGEFLSIISSPLFTPKEWYKN 199 (332)
Q Consensus 120 ~~~~~~l~~~d~~~g~~~~~~~l~~~~~~~~~~ndiavd~dG~lyvtd~~~~~I~~v~~~g~~~~~~~~~~~~~p~~~~~ 199 (332)
..+.+..||.++......... .........+++.++|+.+++-...+.|..++.+++....+...
T Consensus 139 --~d~~i~iwd~~~~~~~~~~~~---~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~h---------- 203 (383)
T 3ei3_B 139 --IRGATTLRDFSGSVIQVFAKT---DSWDYWYCCVDVSVSRQMLATGDSTGRLLLLGLDGHEIFKEKLH---------- 203 (383)
T ss_dssp --TTTEEEEEETTSCEEEEEECC---CCSSCCEEEEEEETTTTEEEEEETTSEEEEEETTSCEEEEEECS----------
T ss_pred --CCCEEEEEECCCCceEEEecc---CCCCCCeEEEEECCCCCEEEEECCCCCEEEEECCCCEEEEeccC----------
Confidence 245788999986443322221 11124578899999999888888889999999887654433211
Q ss_pred ccccCeEEEccCce-EEEEeCCCCeEEEEeCCCCCCccceeEEEEecCCCCCCCCeEEEeC-CCeEEEEeC--CceEEEE
Q 020019 200 LVGLNGIVYHPDGF-LIVIHTFSGNLFKIDIVDGVGEGEEIKLIRVAGGPLSFGDGLELLS-PTKLVVAGN--PSARLVE 275 (332)
Q Consensus 200 ~~~~nGi~~~~dG~-Lyva~~~~~~i~~id~~~~~~~~~~~~~v~~~g~~~~~pdGi~~~~-dG~l~va~~--~~~~~v~ 275 (332)
......++++|++. ++++-...+.|..+++.+.+.....+..+. .......+++.+ +|+++++.. ...++..
T Consensus 204 ~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~----~~~~v~~~~~s~~~~~~l~~~~~d~~i~iwd 279 (383)
T 3ei3_B 204 KAKVTHAEFNPRCDWLMATSSVDATVKLWDLRNIKDKNSYIAEMP----HEKPVNAAYFNPTDSTKLLTTDQRNEIRVYS 279 (383)
T ss_dssp SSCEEEEEECSSCTTEEEEEETTSEEEEEEGGGCCSTTCEEEEEE----CSSCEEEEEECTTTSCEEEEEESSSEEEEEE
T ss_pred CCcEEEEEECCCCCCEEEEEeCCCEEEEEeCCCCCcccceEEEec----CCCceEEEEEcCCCCCEEEEEcCCCcEEEEE
Confidence 12457899999994 777777888998899886322112333332 224567899999 888777653 3334334
Q ss_pred cCCC
Q 020019 276 SSDG 279 (332)
Q Consensus 276 ~~dg 279 (332)
..++
T Consensus 280 ~~~~ 283 (383)
T 3ei3_B 280 SYDW 283 (383)
T ss_dssp TTBT
T ss_pred CCCC
Confidence 4444
|
| >2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A | Back alignment and structure |
|---|
Probab=98.65 E-value=3.8e-05 Score=71.23 Aligned_cols=209 Identities=13% Similarity=0.041 Sum_probs=129.6
Q ss_pred cccceEEcC-CCCEEEEEecCCeEEEEECCCCCCCcccee-eeEEecccCcCCCccceEEEeCCCCeEEEEEeCcCCCcc
Q 020019 46 FRECAKWDD-SGRRFIVSFLDGGIGQVAVPDDYPPGTVLE-EVTLVKDLELTGNGSLGLVLDHPRNRLLVVAADVFGNKY 123 (332)
Q Consensus 46 ~pegia~d~-~g~~~~~~~~~g~I~~vd~~~~~~~~~~~~-~~~~~~~~~~~~~~~~gi~vd~~~g~l~v~~~~~~~~~~ 123 (332)
....+++++ +++++++...++.|..++..++.......+ ...+.... ..+..++++++..+++++... .
T Consensus 83 ~V~~~~~~p~~~~~l~s~s~dg~v~vw~~~~~~~~~~~~~~~~~~~~h~----~~v~~~~~~p~~~~~l~s~~~-----d 153 (402)
T 2aq5_A 83 PVLDIAWCPHNDNVIASGSEDCTVMVWEIPDGGLVLPLREPVITLEGHT----KRVGIVAWHPTAQNVLLSAGC-----D 153 (402)
T ss_dssp CEEEEEECTTCTTEEEEEETTSEEEEEECCTTCCSSCBCSCSEEEECCS----SCEEEEEECSSBTTEEEEEET-----T
T ss_pred CEEEEEeCCCCCCEEEEEeCCCeEEEEEccCCCCccccCCceEEecCCC----CeEEEEEECcCCCCEEEEEcC-----C
Confidence 345689999 888888877789999999876532000000 00222111 257889999973244544332 3
Q ss_pred ceEEEEECCCCcEEEEEecCCCCCCCCCccceEECCCCcEEEEeCCCCeEEEEcCC-CceEEEecCCCCCCcccccCccc
Q 020019 124 SAVAAYDLSTWNRLFLTQLSGPSDGKSCADDVTVDAEGNAYVTDVTGSKIWKVGVK-GEFLSIISSPLFTPKEWYKNLVG 202 (332)
Q Consensus 124 ~~l~~~d~~~g~~~~~~~l~~~~~~~~~~ndiavd~dG~lyvtd~~~~~I~~v~~~-g~~~~~~~~~~~~~p~~~~~~~~ 202 (332)
+.|.+||.++++....+.... .......+++.++|+.+++-+..+.|..+|.. ++....+.... ....
T Consensus 154 g~i~iwd~~~~~~~~~~~~~~---~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~--------~~~~ 222 (402)
T 2aq5_A 154 NVILVWDVGTGAAVLTLGPDV---HPDTIYSVDWSRDGALICTSCRDKRVRVIEPRKGTVVAEKDRPH--------EGTR 222 (402)
T ss_dssp SCEEEEETTTTEEEEEECTTT---CCSCEEEEEECTTSSCEEEEETTSEEEEEETTTTEEEEEEECSS--------CSSS
T ss_pred CEEEEEECCCCCccEEEecCC---CCCceEEEEECCCCCEEEEEecCCcEEEEeCCCCceeeeeccCC--------CCCc
Confidence 568999999887765442111 13467889999999888777788999999976 44433321110 1123
Q ss_pred cCeEEEccCceEEEEe---CCCCeEEEEeCCCCCCccceeEEEEecCCCCCCCCeEEEeCCCeEE-EEeC--CceEEEEc
Q 020019 203 LNGIVYHPDGFLIVIH---TFSGNLFKIDIVDGVGEGEEIKLIRVAGGPLSFGDGLELLSPTKLV-VAGN--PSARLVES 276 (332)
Q Consensus 203 ~nGi~~~~dG~Lyva~---~~~~~i~~id~~~~~~~~~~~~~v~~~g~~~~~pdGi~~~~dG~l~-va~~--~~~~~v~~ 276 (332)
...++++++|.++++- ...+.|..+++.+.+. ........ .......++++++|+.+ ++.. +..++...
T Consensus 223 ~~~~~~~~~~~~l~~g~~~~~d~~i~iwd~~~~~~---~~~~~~~~--~~~~v~~~~~s~~~~~l~~~g~~dg~i~i~d~ 297 (402)
T 2aq5_A 223 PVHAVFVSEGKILTTGFSRMSERQVALWDTKHLEE---PLSLQELD--TSSGVLLPFFDPDTNIVYLCGKGDSSIRYFEI 297 (402)
T ss_dssp CCEEEECSTTEEEEEEECTTCCEEEEEEETTBCSS---CSEEEECC--CCSSCEEEEEETTTTEEEEEETTCSCEEEEEE
T ss_pred ceEEEEcCCCcEEEEeccCCCCceEEEEcCccccC---CceEEecc--CCCceeEEEEcCCCCEEEEEEcCCCeEEEEEe
Confidence 5789999999655555 5678899999886531 23333332 22456788999997755 5552 33454455
Q ss_pred CCC
Q 020019 277 SDG 279 (332)
Q Consensus 277 ~dg 279 (332)
.++
T Consensus 298 ~~~ 300 (402)
T 2aq5_A 298 TSE 300 (402)
T ss_dssp CSS
T ss_pred cCC
Confidence 555
|
| >2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus} | Back alignment and structure |
|---|
Probab=98.64 E-value=2.4e-05 Score=71.76 Aligned_cols=188 Identities=13% Similarity=0.142 Sum_probs=124.3
Q ss_pred cccceEEcCCCCEEEEEecCCeEEEEECCCCCCCccceeeeEEecccCcCCCccceEEEeCC-CCeEEEEEeCcCCCccc
Q 020019 46 FRECAKWDDSGRRFIVSFLDGGIGQVAVPDDYPPGTVLEEVTLVKDLELTGNGSLGLVLDHP-RNRLLVVAADVFGNKYS 124 (332)
Q Consensus 46 ~pegia~d~~g~~~~~~~~~g~I~~vd~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~vd~~-~g~l~v~~~~~~~~~~~ 124 (332)
....+++.++++.+++...++.|..+|..+++. .. ++.... .....+.+.++ ++.++++... .+
T Consensus 156 ~v~~~~~~~~~~~l~t~s~D~~v~lwd~~~~~~----~~--~~~~h~----~~v~~~~~~~~~~g~~l~sgs~-----Dg 220 (354)
T 2pbi_B 156 YLSACSFTNSDMQILTASGDGTCALWDVESGQL----LQ--SFHGHG----ADVLCLDLAPSETGNTFVSGGC-----DK 220 (354)
T ss_dssp CEEEEEECSSSSEEEEEETTSEEEEEETTTCCE----EE--EEECCS----SCEEEEEECCCSSCCEEEEEET-----TS
T ss_pred cEEEEEEeCCCCEEEEEeCCCcEEEEeCCCCeE----EE--EEcCCC----CCeEEEEEEeCCCCCEEEEEeC-----CC
Confidence 345788999998888877889999999887652 12 232111 14566777663 2454444332 35
Q ss_pred eEEEEECCCCcEEEEEecCCCCCCCCCccceEECCCCcEEEEeCCCCeEEEEcCCC-ceEEEecCCCCCCcccccCcccc
Q 020019 125 AVAAYDLSTWNRLFLTQLSGPSDGKSCADDVTVDAEGNAYVTDVTGSKIWKVGVKG-EFLSIISSPLFTPKEWYKNLVGL 203 (332)
Q Consensus 125 ~l~~~d~~~g~~~~~~~l~~~~~~~~~~ndiavd~dG~lyvtd~~~~~I~~v~~~g-~~~~~~~~~~~~~p~~~~~~~~~ 203 (332)
.+..||.++++....... .....+.+++.|+|+.+++-+..+.|..+|... +....+.... .....
T Consensus 221 ~v~~wd~~~~~~~~~~~~-----h~~~v~~v~~~p~~~~l~s~s~D~~v~lwd~~~~~~~~~~~~~~--------~~~~~ 287 (354)
T 2pbi_B 221 KAMVWDMRSGQCVQAFET-----HESDVNSVRYYPSGDAFASGSDDATCRLYDLRADREVAIYSKES--------IIFGA 287 (354)
T ss_dssp CEEEEETTTCCEEEEECC-----CSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCTT--------CCSCE
T ss_pred eEEEEECCCCcEEEEecC-----CCCCeEEEEEeCCCCEEEEEeCCCeEEEEECCCCcEEEEEcCCC--------cccce
Confidence 689999999887654332 124577899999999888888888888888653 3333222111 11345
Q ss_pred CeEEEccCceEEEEeCCCCeEEEEeCCCCCCccceeEEEEecCCCCCCCCeEEEeCCCeEEEEeC
Q 020019 204 NGIVYHPDGFLIVIHTFSGNLFKIDIVDGVGEGEEIKLIRVAGGPLSFGDGLELLSPTKLVVAGN 268 (332)
Q Consensus 204 nGi~~~~dG~Lyva~~~~~~i~~id~~~~~~~~~~~~~v~~~g~~~~~pdGi~~~~dG~l~va~~ 268 (332)
..++|+++|.+.++-...+.|..++..+++ .+..+. + .......+++.+||+++++..
T Consensus 288 ~~~~~s~~g~~l~~g~~d~~i~vwd~~~~~----~~~~l~--~-h~~~v~~l~~spdg~~l~sgs 345 (354)
T 2pbi_B 288 SSVDFSLSGRLLFAGYNDYTINVWDVLKGS----RVSILF--G-HENRVSTLRVSPDGTAFCSGS 345 (354)
T ss_dssp EEEEECTTSSEEEEEETTSCEEEEETTTCS----EEEEEC--C-CSSCEEEEEECTTSSCEEEEE
T ss_pred eEEEEeCCCCEEEEEECCCcEEEEECCCCc----eEEEEE--C-CCCcEEEEEECCCCCEEEEEc
Confidence 689999999555555677889989987662 343332 1 334567899999998777753
|
| >4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.64 E-value=3.8e-05 Score=70.38 Aligned_cols=223 Identities=11% Similarity=0.059 Sum_probs=134.0
Q ss_pred cceEEcCCCCEEEEEecCCeEEEEECCCCCCCccceeeeEEecccCcCC-CccceEEEeCCCCeEEEEEeCcCCCccceE
Q 020019 48 ECAKWDDSGRRFIVSFLDGGIGQVAVPDDYPPGTVLEEVTLVKDLELTG-NGSLGLVLDHPRNRLLVVAADVFGNKYSAV 126 (332)
Q Consensus 48 egia~d~~g~~~~~~~~~g~I~~vd~~~~~~~~~~~~~~~~~~~~~~~~-~~~~gi~vd~~~g~l~v~~~~~~~~~~~~l 126 (332)
..++|.+++. +++...+|.|..+|..+++.. ...... ...+ .....+++.++ |+++++... .+.|
T Consensus 86 ~~~~~s~d~~-l~~~s~dg~v~lWd~~~~~~~----~~~~~~---~~~H~~~V~~v~~spd-g~~l~sgs~-----d~~i 151 (344)
T 4gqb_B 86 ADLTWVGERG-ILVASDSGAVELWELDENETL----IVSKFC---KYEHDDIVSTVSVLSS-GTQAVSGSK-----DICI 151 (344)
T ss_dssp EEEEEETTTE-EEEEETTSEEEEEEECTTSSC----EEEEEE---EECCSSCEEEEEECTT-SSEEEEEET-----TSCE
T ss_pred EEEEEeCCCe-EEEEECCCEEEEEeccCCCce----eEeecc---ccCCCCCEEEEEECCC-CCEEEEEeC-----CCeE
Confidence 4578999865 445566899999998776631 100111 0111 25689999997 765554432 3568
Q ss_pred EEEECCCCcEEEEEecCCCCCCCCCccceEECCCC-cEEEEeCCCCeEEEEcCC-CceEEEecCCCCCCcccccCccccC
Q 020019 127 AAYDLSTWNRLFLTQLSGPSDGKSCADDVTVDAEG-NAYVTDVTGSKIWKVGVK-GEFLSIISSPLFTPKEWYKNLVGLN 204 (332)
Q Consensus 127 ~~~d~~~g~~~~~~~l~~~~~~~~~~ndiavd~dG-~lyvtd~~~~~I~~v~~~-g~~~~~~~~~~~~~p~~~~~~~~~n 204 (332)
.+||.++++...... +. ....+.+++.+++ +++++-+..+.|...|.. ++....+.... .....+
T Consensus 152 ~iwd~~~~~~~~~~~--~h---~~~V~~~~~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~--------~~~~~~ 218 (344)
T 4gqb_B 152 KVWDLAQQVVLSSYR--AH---AAQVTCVAASPHKDSVFLSCSEDNRILLWDTRCPKPASQIGCSA--------PGYLPT 218 (344)
T ss_dssp EEEETTTTEEEEEEC--CC---SSCEEEEEECSSCTTEEEEEETTSCEEEEETTSSSCEEECC------------CCCEE
T ss_pred EEEECCCCcEEEEEc--Cc---CCceEEEEecCCCCCceeeeccccccccccccccceeeeeecce--------eeccce
Confidence 899999988765432 11 2456789999987 588888888888888865 44433221110 112356
Q ss_pred eEEEccCc-eEEEEeCCCCeEEEEeCCCCCCccceeEEEEecCCCCCCCCeEEEeCCC-eEEEEe-C-CceEEEEcCCCc
Q 020019 205 GIVYHPDG-FLIVIHTFSGNLFKIDIVDGVGEGEEIKLIRVAGGPLSFGDGLELLSPT-KLVVAG-N-PSARLVESSDGW 280 (332)
Q Consensus 205 Gi~~~~dG-~Lyva~~~~~~i~~id~~~~~~~~~~~~~v~~~g~~~~~pdGi~~~~dG-~l~va~-~-~~~~~v~~~dg~ 280 (332)
.+++++++ .++++-..++.|..+|+.+++ .+..+.. .......+++.++| +++++. . ..+++-....+
T Consensus 219 ~~~~~p~~~~~l~sg~~dg~v~~wd~~~~~----~~~~~~~---h~~~v~~v~fsp~g~~~lasgs~D~~i~vwd~~~~- 290 (344)
T 4gqb_B 219 SLAWHPQQSEVFVFGDENGTVSLVDTKSTS----CVLSSAV---HSQCVTGLVFSPHSVPFLASLSEDCSLAVLDSSLS- 290 (344)
T ss_dssp EEEECSSCTTEEEEEETTSEEEEEESCC------CCEEEEC---CSSCEEEEEECSSSSCCEEEEETTSCEEEECTTCC-
T ss_pred eeeecCCCCcceEEeccCCcEEEEECCCCc----EEEEEcC---CCCCEEEEEEccCCCeEEEEEeCCCeEEEEECCCC-
Confidence 89999976 787777778889889998763 4444442 22445688999987 455553 2 33443344444
Q ss_pred eEEEEEeeecCCCcccceEEEE-E-CCeEEEE
Q 020019 281 ETAAVVAKFSGPVHRLATAATV-K-DGRVYLN 310 (332)
Q Consensus 281 ~~~~~~~~~~~~~~~~pt~va~-~-~g~lyv~ 310 (332)
++.... .--...++++| . +.+|+++
T Consensus 291 ---~~~~~~--~H~~~V~~v~~sp~~~~llas 317 (344)
T 4gqb_B 291 ---ELFRSQ--AHRDFVRDATWSPLNHSLLTT 317 (344)
T ss_dssp ---EEEEEC--CCSSCEEEEEECSSSTTEEEE
T ss_pred ---cEEEEc--CCCCCEEEEEEeCCCCeEEEE
Confidence 233221 11123467777 3 3456554
|
| >3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A | Back alignment and structure |
|---|
Probab=98.64 E-value=3.4e-05 Score=78.00 Aligned_cols=202 Identities=4% Similarity=-0.008 Sum_probs=130.2
Q ss_pred ecCCccccceEEcCCCCEEEEEecCCeEEEEECCCCCCCccceeeeEEecccCcCCCccceEEEeCCCCeEEEEEeCcCC
Q 020019 41 HSSSFFRECAKWDDSGRRFIVSFLDGGIGQVAVPDDYPPGTVLEEVTLVKDLELTGNGSLGLVLDHPRNRLLVVAADVFG 120 (332)
Q Consensus 41 ~~~~~~pegia~d~~g~~~~~~~~~g~I~~vd~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~vd~~~g~l~v~~~~~~~ 120 (332)
.+......+++++|+|+++++...+|.|..++..+++. .. .+.... .....++++++ +..+++...
T Consensus 10 ~~h~~~v~~i~~sp~~~~la~~~~~g~v~iwd~~~~~~----~~--~~~~~~----~~v~~~~~s~~-~~~l~~~~~--- 75 (814)
T 3mkq_A 10 SNRSDRVKGIDFHPTEPWVLTTLYSGRVEIWNYETQVE----VR--SIQVTE----TPVRAGKFIAR-KNWIIVGSD--- 75 (814)
T ss_dssp EEECSCEEEEEECSSSSEEEEEETTSEEEEEETTTTEE----EE--EEECCS----SCEEEEEEEGG-GTEEEEEET---
T ss_pred ecCCCceEEEEECCCCCEEEEEeCCCEEEEEECCCCce----EE--EEecCC----CcEEEEEEeCC-CCEEEEEeC---
Confidence 33334567899999999888777789999999876652 11 222111 25688999997 654444332
Q ss_pred CccceEEEEECCCCcEEEEEecCCCCCCCCCccceEECCCCcEEEEeCCCCeEEEEcCCC--ceEEEecCCCCCCccccc
Q 020019 121 NKYSAVAAYDLSTWNRLFLTQLSGPSDGKSCADDVTVDAEGNAYVTDVTGSKIWKVGVKG--EFLSIISSPLFTPKEWYK 198 (332)
Q Consensus 121 ~~~~~l~~~d~~~g~~~~~~~l~~~~~~~~~~ndiavd~dG~lyvtd~~~~~I~~v~~~g--~~~~~~~~~~~~~p~~~~ 198 (332)
.+.|.+||.++++......- .......+++.|+|...++-+..+.|..++.+. +....+...
T Consensus 76 --dg~i~vw~~~~~~~~~~~~~-----~~~~v~~~~~s~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~--------- 139 (814)
T 3mkq_A 76 --DFRIRVFNYNTGEKVVDFEA-----HPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNWALEQTFEGH--------- 139 (814)
T ss_dssp --TSEEEEEETTTCCEEEEEEC-----CSSCEEEEEECSSSSEEEEEETTSEEEEEEGGGTSEEEEEEECC---------
T ss_pred --CCeEEEEECCCCcEEEEEec-----CCCCEEEEEEeCCCCEEEEEcCCCEEEEEECCCCceEEEEEcCC---------
Confidence 45799999998887654432 124577899999998777777778888877653 322222111
Q ss_pred CccccCeEEEcc-CceEEEEeCCCCeEEEEeCCCCCCccceeEEEEecCCCCCCCCeEEEeC--CCeEEEEeC--CceEE
Q 020019 199 NLVGLNGIVYHP-DGFLIVIHTFSGNLFKIDIVDGVGEGEEIKLIRVAGGPLSFGDGLELLS--PTKLVVAGN--PSARL 273 (332)
Q Consensus 199 ~~~~~nGi~~~~-dG~Lyva~~~~~~i~~id~~~~~~~~~~~~~v~~~g~~~~~pdGi~~~~--dG~l~va~~--~~~~~ 273 (332)
......++|+| ++.++++-...+.|..+++.++. ....+... .......+++.+ +|.++++.. ...++
T Consensus 140 -~~~v~~~~~~p~~~~~l~~~~~dg~v~vwd~~~~~----~~~~~~~~--~~~~v~~~~~~~~~~~~~l~~~~~dg~i~~ 212 (814)
T 3mkq_A 140 -EHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQST----PNFTLTTG--QERGVNYVDYYPLPDKPYMITASDDLTIKI 212 (814)
T ss_dssp -SSCEEEEEEETTEEEEEEEEETTSEEEEEETTCSS----CSEEEECC--CTTCCCEEEECCSTTCCEEEEECTTSEEEE
T ss_pred -CCcEEEEEEEcCCCCEEEEEeCCCeEEEEECCCCc----ceeEEecC--CCCCEEEEEEEECCCCCEEEEEeCCCEEEE
Confidence 12357899999 77666666678889999987652 33333322 224566788887 777666653 23333
Q ss_pred EEcCCC
Q 020019 274 VESSDG 279 (332)
Q Consensus 274 v~~~dg 279 (332)
....++
T Consensus 213 ~d~~~~ 218 (814)
T 3mkq_A 213 WDYQTK 218 (814)
T ss_dssp EETTTT
T ss_pred EECCCC
Confidence 344555
|
| >1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B* | Back alignment and structure |
|---|
Probab=98.64 E-value=0.00014 Score=66.02 Aligned_cols=204 Identities=11% Similarity=0.081 Sum_probs=128.4
Q ss_pred EEecCCccccceEEcCCCCEEEEEecCCeEEEEECCCCCCCccceeeeEEecccCcCCCccceEEEeCCCCeEEEEEeCc
Q 020019 39 HYHSSSFFRECAKWDDSGRRFIVSFLDGGIGQVAVPDDYPPGTVLEEVTLVKDLELTGNGSLGLVLDHPRNRLLVVAADV 118 (332)
Q Consensus 39 ~~~~~~~~pegia~d~~g~~~~~~~~~g~I~~vd~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~vd~~~g~l~v~~~~~ 118 (332)
.+.+.......++++++++++++...++.|..++..+++. .. .+... ......+++.++ ++++++...
T Consensus 50 ~l~gH~~~v~~~~~s~d~~~l~s~s~Dg~v~iWd~~~~~~----~~--~~~~~----~~~v~~~~~s~~-~~~l~s~~~- 117 (340)
T 1got_B 50 TLRGHLAKIYAMHWGTDSRLLLSASQDGKLIIWDSYTTNK----VH--AIPLR----SSWVMTCAYAPS-GNYVACGGL- 117 (340)
T ss_dssp EECCCSSCEEEEEECTTSSEEEEEETTTEEEEEETTTCCE----EE--EEECS----SSCEEEEEECTT-SSEEEEEET-
T ss_pred eecCCCCceEEEEECCCCCEEEEEeCCCcEEEEECCCCCc----ce--EeecC----CccEEEEEECCC-CCEEEEEeC-
Confidence 3444444567899999999888888899999999876652 11 22211 125678999997 665554432
Q ss_pred CCCccceEEEEECCCCc--EEEEEecCCCCCCCCCccceEECCCCcEEEEeCCCCeEEEEcCC-CceEEEecCCCCCCcc
Q 020019 119 FGNKYSAVAAYDLSTWN--RLFLTQLSGPSDGKSCADDVTVDAEGNAYVTDVTGSKIWKVGVK-GEFLSIISSPLFTPKE 195 (332)
Q Consensus 119 ~~~~~~~l~~~d~~~g~--~~~~~~l~~~~~~~~~~ndiavd~dG~lyvtd~~~~~I~~v~~~-g~~~~~~~~~~~~~p~ 195 (332)
.+.+..||.++++ ......+.+. ......+.+.+++. +++-+..+.|..+|.. ++....+...
T Consensus 118 ----d~~v~iw~~~~~~~~~~~~~~~~~h---~~~v~~~~~~~~~~-l~s~s~d~~i~~wd~~~~~~~~~~~~h------ 183 (340)
T 1got_B 118 ----DNICSIYNLKTREGNVRVSRELAGH---TGYLSCCRFLDDNQ-IVTSSGDTTCALWDIETGQQTTTFTGH------ 183 (340)
T ss_dssp ----TCEEEEEETTTCSBSCEEEEEEECC---SSCEEEEEEEETTE-EEEEETTSCEEEEETTTTEEEEEECCC------
T ss_pred ----CCeEEEEECccCCCcceeEEEecCC---CccEEEEEECCCCc-EEEEECCCcEEEEECCCCcEEEEEcCC------
Confidence 3568889987653 1222233211 24456677777775 5555667888888865 4443322211
Q ss_pred cccCccccCeEEEccCceEEEEeCCCCeEEEEeCCCCCCccceeEEEEecCCCCCCCCeEEEeCCCeEEEEeC--CceEE
Q 020019 196 WYKNLVGLNGIVYHPDGFLIVIHTFSGNLFKIDIVDGVGEGEEIKLIRVAGGPLSFGDGLELLSPTKLVVAGN--PSARL 273 (332)
Q Consensus 196 ~~~~~~~~nGi~~~~dG~Lyva~~~~~~i~~id~~~~~~~~~~~~~v~~~g~~~~~pdGi~~~~dG~l~va~~--~~~~~ 273 (332)
......++++|++.++++-...+.|..+|+.++. ....+.. .......+++.|+|+++++.. ...++
T Consensus 184 ----~~~v~~~~~~~~~~~l~sg~~d~~v~~wd~~~~~----~~~~~~~---h~~~v~~v~~~p~~~~l~s~s~d~~v~i 252 (340)
T 1got_B 184 ----TGDVMSLSLAPDTRLFVSGACDASAKLWDVREGM----CRQTFTG---HESDINAICFFPNGNAFATGSDDATCRL 252 (340)
T ss_dssp ----SSCEEEEEECTTSSEEEEEETTSCEEEEETTTCS----EEEEECC---CSSCEEEEEECTTSSEEEEEETTSCEEE
T ss_pred ----CCceEEEEECCCCCEEEEEeCCCcEEEEECCCCe----eEEEEcC---CcCCEEEEEEcCCCCEEEEEcCCCcEEE
Confidence 1235789999999777777778889889988762 3433331 224567899999988877753 33444
Q ss_pred EEcCCC
Q 020019 274 VESSDG 279 (332)
Q Consensus 274 v~~~dg 279 (332)
.....+
T Consensus 253 wd~~~~ 258 (340)
T 1got_B 253 FDLRAD 258 (340)
T ss_dssp EETTTT
T ss_pred EECCCC
Confidence 445555
|
| >2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A | Back alignment and structure |
|---|
Probab=98.64 E-value=0.00013 Score=65.19 Aligned_cols=161 Identities=5% Similarity=0.011 Sum_probs=108.5
Q ss_pred ecCCccccceEEcCCCCEEEEEecCCeEEEEECCCCCCCccceeeeEEecccCcCCCccceEEEeCCCCeEEEEEeCcCC
Q 020019 41 HSSSFFRECAKWDDSGRRFIVSFLDGGIGQVAVPDDYPPGTVLEEVTLVKDLELTGNGSLGLVLDHPRNRLLVVAADVFG 120 (332)
Q Consensus 41 ~~~~~~pegia~d~~g~~~~~~~~~g~I~~vd~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~vd~~~g~l~v~~~~~~~ 120 (332)
.+......+++++|+|+++++...+|.|..++..+++. .. .+.. .. .....+.+.++ ++++++...
T Consensus 10 ~~h~~~V~~~~fsp~~~~l~s~~~dg~v~lWd~~~~~~----~~--~~~~-~~---~~v~~~~~~~~-~~~l~s~s~--- 75 (304)
T 2ynn_A 10 SNRSDRVKGIDFHPTEPWVLTTLYSGRVELWNYETQVE----VR--SIQV-TE---TPVRAGKFIAR-KNWIIVGSD--- 75 (304)
T ss_dssp EEECSCEEEEEECSSSSEEEEEETTSEEEEEETTTTEE----EE--EEEC-CS---SCEEEEEEEGG-GTEEEEEET---
T ss_pred cCCCCceEEEEECCCCCEEEEEcCCCcEEEEECCCCce----eE--Eeec-cC---CcEEEEEEeCC-CCEEEEECC---
Confidence 33333567899999999888888899999999876641 11 2221 11 24578888886 554444332
Q ss_pred CccceEEEEECCCCcEEEEEecCCCCCCCCCccceEECCCCcEEEEeCCCCeEEEEcCC-C-ceEEEecCCCCCCccccc
Q 020019 121 NKYSAVAAYDLSTWNRLFLTQLSGPSDGKSCADDVTVDAEGNAYVTDVTGSKIWKVGVK-G-EFLSIISSPLFTPKEWYK 198 (332)
Q Consensus 121 ~~~~~l~~~d~~~g~~~~~~~l~~~~~~~~~~ndiavd~dG~lyvtd~~~~~I~~v~~~-g-~~~~~~~~~~~~~p~~~~ 198 (332)
.+.+.+||.++++......- . ....+.+++.|+++++++-+..+.|...|.. + .....+..
T Consensus 76 --d~~i~vwd~~~~~~~~~~~~--h---~~~v~~~~~~~~~~~l~sgs~D~~v~lWd~~~~~~~~~~~~~---------- 138 (304)
T 2ynn_A 76 --DFRIRVFNYNTGEKVVDFEA--H---PDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNWALEQTFEG---------- 138 (304)
T ss_dssp --TSEEEEEETTTCCEEEEEEC--C---SSCEEEEEECSSSSEEEEEETTSCEEEEEGGGTTEEEEEECC----------
T ss_pred --CCEEEEEECCCCcEEEEEeC--C---CCcEEEEEEcCCCCEEEEECCCCeEEEEECCCCcchhhhhcc----------
Confidence 45789999999887654432 1 2457789999999988888888888888765 3 22222211
Q ss_pred CccccCeEEEccC-ceEEEEeCCCCeEEEEeCCCC
Q 020019 199 NLVGLNGIVYHPD-GFLIVIHTFSGNLFKIDIVDG 232 (332)
Q Consensus 199 ~~~~~nGi~~~~d-G~Lyva~~~~~~i~~id~~~~ 232 (332)
.......++|+|+ +.++++-...+.|..+|+...
T Consensus 139 h~~~v~~v~~~p~~~~~l~sgs~D~~v~iwd~~~~ 173 (304)
T 2ynn_A 139 HEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQS 173 (304)
T ss_dssp CCSCEEEEEECTTCTTEEEEEETTSEEEEEETTCS
T ss_pred cCCcEEEEEECCCCCCEEEEEeCCCeEEEEECCCC
Confidence 1123578999984 566666677888988888755
|
| >2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str} | Back alignment and structure |
|---|
Probab=98.63 E-value=8.7e-06 Score=70.94 Aligned_cols=163 Identities=11% Similarity=0.098 Sum_probs=101.3
Q ss_pred cCCeEEEEECCCCCCCccceeeeEEecccCcCCCccceEEEeCCCCeEEEEEeCcCCCccceEEEEECCC-CcEEEEEec
Q 020019 64 LDGGIGQVAVPDDYPPGTVLEEVTLVKDLELTGNGSLGLVLDHPRNRLLVVAADVFGNKYSAVAAYDLST-WNRLFLTQL 142 (332)
Q Consensus 64 ~~g~I~~vd~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~vd~~~g~l~v~~~~~~~~~~~~l~~~d~~~-g~~~~~~~l 142 (332)
.+++|+.++..+++. . .+.... ..+..++++++ |+.+++.. .+.|++||.++ ++.......
T Consensus 20 ~~~~i~~~d~~~~~~-----~--~~~~~~----~~v~~~~~spd-g~~l~~~~------~~~i~~~d~~~~~~~~~~~~~ 81 (297)
T 2ojh_A 20 MRSSIEIFNIRTRKM-----R--VVWQTP----ELFEAPNWSPD-GKYLLLNS------EGLLYRLSLAGDPSPEKVDTG 81 (297)
T ss_dssp CCEEEEEEETTTTEE-----E--EEEEES----SCCEEEEECTT-SSEEEEEE------TTEEEEEESSSCCSCEECCCT
T ss_pred cceeEEEEeCCCCce-----e--eeccCC----cceEeeEECCC-CCEEEEEc------CCeEEEEeCCCCCCceEeccc
Confidence 457899999876652 1 233221 25678999997 66555543 24799999988 776532211
Q ss_pred CCCCCCCCCccceEECCCCc-EEEEeC---CCCeEEEEcCCCceEEEecCCCCCCcccccCccccCeEEEccCc-eEEEE
Q 020019 143 SGPSDGKSCADDVTVDAEGN-AYVTDV---TGSKIWKVGVKGEFLSIISSPLFTPKEWYKNLVGLNGIVYHPDG-FLIVI 217 (332)
Q Consensus 143 ~~~~~~~~~~ndiavd~dG~-lyvtd~---~~~~I~~v~~~g~~~~~~~~~~~~~p~~~~~~~~~nGi~~~~dG-~Lyva 217 (332)
.......++++.|+|+ ++++.. ....|+.++.++.....+... .....++++||| .|+++
T Consensus 82 ----~~~~~~~~~~~spdg~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~-----------~~~~~~~~spdg~~l~~~ 146 (297)
T 2ojh_A 82 ----FATICNNDHGISPDGALYAISDKVEFGKSAIYLLPSTGGTPRLMTKN-----------LPSYWHGWSPDGKSFTYC 146 (297)
T ss_dssp ----TCCCBCSCCEECTTSSEEEEEECTTTSSCEEEEEETTCCCCEECCSS-----------SSEEEEEECTTSSEEEEE
T ss_pred ----cccccccceEECCCCCEEEEEEeCCCCcceEEEEECCCCceEEeecC-----------CCccceEECCCCCEEEEE
Confidence 1135678899999997 444432 367899998765433222111 125678999999 77766
Q ss_pred eCCCC--eEEEEeCCCCCCccceeEEEEecCCCCCCCCeEEEeCCCe-EEEEe
Q 020019 218 HTFSG--NLFKIDIVDGVGEGEEIKLIRVAGGPLSFGDGLELLSPTK-LVVAG 267 (332)
Q Consensus 218 ~~~~~--~i~~id~~~~~~~~~~~~~v~~~g~~~~~pdGi~~~~dG~-l~va~ 267 (332)
....+ +||.++..++ ....+.. ....+..++++++|+ |+++.
T Consensus 147 ~~~~~~~~l~~~~~~~~-----~~~~~~~---~~~~~~~~~~s~dg~~l~~~~ 191 (297)
T 2ojh_A 147 GIRDQVFDIYSMDIDSG-----VETRLTH---GEGRNDGPDYSPDGRWIYFNS 191 (297)
T ss_dssp EEETTEEEEEEEETTTC-----CEEECCC---SSSCEEEEEECTTSSEEEEEE
T ss_pred ECCCCceEEEEEECCCC-----cceEccc---CCCccccceECCCCCEEEEEe
Confidence 55455 6788887755 2332221 223457889999987 55553
|
| >4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe} | Back alignment and structure |
|---|
Probab=98.62 E-value=0.00011 Score=68.07 Aligned_cols=180 Identities=12% Similarity=0.088 Sum_probs=121.6
Q ss_pred cccceEEcCCCCEEEEEecCCeEEEEECCCCCCCccceeeeEEecccCcCCCccceEEEeCCCCeEEEEEeCcCCCccce
Q 020019 46 FRECAKWDDSGRRFIVSFLDGGIGQVAVPDDYPPGTVLEEVTLVKDLELTGNGSLGLVLDHPRNRLLVVAADVFGNKYSA 125 (332)
Q Consensus 46 ~pegia~d~~g~~~~~~~~~g~I~~vd~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~vd~~~g~l~v~~~~~~~~~~~~ 125 (332)
....++++++++.+++...+|.|..++..+++. .. .+... ......+.+++ ..++.+.. .+.
T Consensus 136 ~v~~v~~s~~~~~l~~~~~dg~i~iwd~~~~~~----~~--~~~~~----~~~v~~~~~~~--~~l~~~~~------dg~ 197 (401)
T 4aez_A 136 YVASVKWSHDGSFLSVGLGNGLVDIYDVESQTK----LR--TMAGH----QARVGCLSWNR--HVLSSGSR------SGA 197 (401)
T ss_dssp CEEEEEECTTSSEEEEEETTSCEEEEETTTCCE----EE--EECCC----SSCEEEEEEET--TEEEEEET------TSE
T ss_pred CEEEEEECCCCCEEEEECCCCeEEEEECcCCeE----EE--EecCC----CCceEEEEECC--CEEEEEcC------CCC
Confidence 456789999999888877789999999876652 11 22211 12567788864 45555443 467
Q ss_pred EEEEECCCC-cEEEEEecCCCCCCCCCccceEECCCCcEEEEeCCCCeEEEEcCC-CceEEEecCCCCCCcccccCcccc
Q 020019 126 VAAYDLSTW-NRLFLTQLSGPSDGKSCADDVTVDAEGNAYVTDVTGSKIWKVGVK-GEFLSIISSPLFTPKEWYKNLVGL 203 (332)
Q Consensus 126 l~~~d~~~g-~~~~~~~l~~~~~~~~~~ndiavd~dG~lyvtd~~~~~I~~v~~~-g~~~~~~~~~~~~~p~~~~~~~~~ 203 (332)
+..||.+.. +......- ......++++.++|+.+++-+..+.|..+|.. ++....+.. .....
T Consensus 198 i~i~d~~~~~~~~~~~~~-----~~~~v~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~----------~~~~v 262 (401)
T 4aez_A 198 IHHHDVRIANHQIGTLQG-----HSSEVCGLAWRSDGLQLASGGNDNVVQIWDARSSIPKFTKTN----------HNAAV 262 (401)
T ss_dssp EEEEETTSSSCEEEEEEC-----CSSCEEEEEECTTSSEEEEEETTSCEEEEETTCSSEEEEECC----------CSSCC
T ss_pred EEEEecccCcceeeEEcC-----CCCCeeEEEEcCCCCEEEEEeCCCeEEEccCCCCCccEEecC----------CcceE
Confidence 899999843 33332221 13467789999999988888888899998876 343332211 11345
Q ss_pred CeEEEccCc-eEEEEeC--CCCeEEEEeCCCCCCccceeEEEEecCCCCCCCCeEEEeCCCeEEEE
Q 020019 204 NGIVYHPDG-FLIVIHT--FSGNLFKIDIVDGVGEGEEIKLIRVAGGPLSFGDGLELLSPTKLVVA 266 (332)
Q Consensus 204 nGi~~~~dG-~Lyva~~--~~~~i~~id~~~~~~~~~~~~~v~~~g~~~~~pdGi~~~~dG~l~va 266 (332)
..++++|++ .++++-. ..+.|..+++.+++ .+..+... .....+++.++|+.+++
T Consensus 263 ~~~~~~p~~~~ll~~~~gs~d~~i~i~d~~~~~----~~~~~~~~----~~v~~~~~s~~~~~l~~ 320 (401)
T 4aez_A 263 KAVAWCPWQSNLLATGGGTMDKQIHFWNAATGA----RVNTVDAG----SQVTSLIWSPHSKEIMS 320 (401)
T ss_dssp CEEEECTTSTTEEEEECCTTTCEEEEEETTTCC----EEEEEECS----SCEEEEEECSSSSEEEE
T ss_pred EEEEECCCCCCEEEEecCCCCCEEEEEECCCCC----EEEEEeCC----CcEEEEEECCCCCeEEE
Confidence 799999988 8887754 68899999998762 45545432 34678999999887776
|
| >2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A | Back alignment and structure |
|---|
Probab=98.61 E-value=3.4e-05 Score=72.52 Aligned_cols=161 Identities=11% Similarity=0.087 Sum_probs=100.3
Q ss_pred CeEEEEECCCCCCCccceeeeEEecccCcCCCccceEEEeCCCCe-EEEEEeCcCCCccceEEEEECCCCcEEEEEecCC
Q 020019 66 GGIGQVAVPDDYPPGTVLEEVTLVKDLELTGNGSLGLVLDHPRNR-LLVVAADVFGNKYSAVAAYDLSTWNRLFLTQLSG 144 (332)
Q Consensus 66 g~I~~vd~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~vd~~~g~-l~v~~~~~~~~~~~~l~~~d~~~g~~~~~~~l~~ 144 (332)
++|+.+|.+++.. . .+.... .....+++.|+ |+ |+.+..+. +...|+.||+++++.......
T Consensus 159 ~~i~i~d~~g~~~-----~--~l~~~~----~~v~~~~~Spd-g~~la~~s~~~---~~~~i~~~d~~tg~~~~l~~~-- 221 (415)
T 2hqs_A 159 YELRVSDYDGYNQ-----F--VVHRSP----QPLMSPAWSPD-GSKLAYVTFES---GRSALVIQTLANGAVRQVASF-- 221 (415)
T ss_dssp EEEEEEETTSCSC-----E--EEEEES----SCEEEEEECTT-SSEEEEEECTT---SSCEEEEEETTTCCEEEEECC--
T ss_pred ceEEEEcCCCCCC-----E--EEeCCC----CcceeeEEcCC-CCEEEEEEecC---CCcEEEEEECCCCcEEEeecC--
Confidence 6899999875432 1 333211 25678999997 65 44444321 124799999999887543322
Q ss_pred CCCCCCCccceEECCCCc-EEEEeCC--CCeEEEEcCCC-ceEEEecCCCCCCcccccCccccCeEEEccCc-eEEEEeC
Q 020019 145 PSDGKSCADDVTVDAEGN-AYVTDVT--GSKIWKVGVKG-EFLSIISSPLFTPKEWYKNLVGLNGIVYHPDG-FLIVIHT 219 (332)
Q Consensus 145 ~~~~~~~~ndiavd~dG~-lyvtd~~--~~~I~~v~~~g-~~~~~~~~~~~~~p~~~~~~~~~nGi~~~~dG-~Lyva~~ 219 (332)
......+++.|||+ |+++.+. ...|+.++..+ +...+... ......++|+||| .|+++..
T Consensus 222 ----~~~~~~~~~spdg~~la~~~~~~g~~~i~~~d~~~~~~~~l~~~-----------~~~~~~~~~spdg~~l~~~s~ 286 (415)
T 2hqs_A 222 ----PRHNGAPAFSPDGSKLAFALSKTGSLNLYVMDLASGQIRQVTDG-----------RSNNTEPTWFPDSQNLAFTSD 286 (415)
T ss_dssp ----SSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCCEEECCCC-----------SSCEEEEEECTTSSEEEEEEC
T ss_pred ----CCcccCEEEcCCCCEEEEEEecCCCceEEEEECCCCCEEeCcCC-----------CCcccceEECCCCCEEEEEEC
Confidence 23567899999997 6656543 45699999864 43332211 1234688999999 7777764
Q ss_pred CCC--eEEEEeCCCCCCccceeEEEEecCCCCCCCCeEEEeCCCeEEEE
Q 020019 220 FSG--NLFKIDIVDGVGEGEEIKLIRVAGGPLSFGDGLELLSPTKLVVA 266 (332)
Q Consensus 220 ~~~--~i~~id~~~~~~~~~~~~~v~~~g~~~~~pdGi~~~~dG~l~va 266 (332)
..+ +|+.+++.++ ....+... ......+++.+||+.++.
T Consensus 287 ~~g~~~i~~~d~~~~-----~~~~l~~~---~~~~~~~~~spdG~~l~~ 327 (415)
T 2hqs_A 287 QAGRPQVYKVNINGG-----APQRITWE---GSQNQDADVSSDGKFMVM 327 (415)
T ss_dssp TTSSCEEEEEETTSS-----CCEECCCS---SSEEEEEEECTTSSEEEE
T ss_pred CCCCcEEEEEECCCC-----CEEEEecC---CCcccCeEECCCCCEEEE
Confidence 333 8999999876 23323222 123456888999874444
|
| >2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A* | Back alignment and structure |
|---|
Probab=98.60 E-value=9e-06 Score=81.28 Aligned_cols=191 Identities=14% Similarity=0.080 Sum_probs=114.4
Q ss_pred ccceEEcCCCCEEEEEe---------------------------------cCCeEEEEECCCCCCCccceeeeEEecccC
Q 020019 47 RECAKWDDSGRRFIVSF---------------------------------LDGGIGQVAVPDDYPPGTVLEEVTLVKDLE 93 (332)
Q Consensus 47 pegia~d~~g~~~~~~~---------------------------------~~g~I~~vd~~~~~~~~~~~~~~~~~~~~~ 93 (332)
+.+++|+|||+.++... ...+|+.++..+++. ..+....
T Consensus 183 ~~~~~~SpDg~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~y~~~g~~~~~~~l~~~d~~~~~~--------~~~~~~~ 254 (706)
T 2z3z_A 183 EKGTFWSPKGSCLAFYRMDQSMVKPTPIVDYHPLEAESKPLYYPMAGTPSHHVTVGIYHLATGKT--------VYLQTGE 254 (706)
T ss_dssp CCSEEECTTSSEEEEEEEECTTSCCEEEEECCSSSCEEEEECCCBTTSCCCEEEEEEEETTTTEE--------EECCCCS
T ss_pred CceEEECCCCCEEEEEEECCCCCceEEeeccCCCCCceEEeeCCCCCCCCCeeEEEEEECCCCce--------EeeccCC
Confidence 47899999999665542 235689999876641 1111111
Q ss_pred cCCCccceEEEeCCCCeEEEEEeCcCCCccceEEEEECCCC-cEEEEEecCCCCCCCCCccceEECC--CCcEEEEeC--
Q 020019 94 LTGNGSLGLVLDHPRNRLLVVAADVFGNKYSAVAAYDLSTW-NRLFLTQLSGPSDGKSCADDVTVDA--EGNAYVTDV-- 168 (332)
Q Consensus 94 ~~~~~~~gi~vd~~~g~l~v~~~~~~~~~~~~l~~~d~~~g-~~~~~~~l~~~~~~~~~~ndiavd~--dG~lyvtd~-- 168 (332)
.....+..+++.++...|+++..+.. .....|..||.+++ +......-.. .......+.+++.| ||+++++..
T Consensus 255 ~~~~~~~~~~~spdg~~l~~~~~~~~-~~~~~v~~~d~~~g~~~~~~~~~~~-~~~~~~~~~~~~sp~~dg~~l~~~~~~ 332 (706)
T 2z3z_A 255 PKEKFLTNLSWSPDENILYVAEVNRA-QNECKVNAYDAETGRFVRTLFVETD-KHYVEPLHPLTFLPGSNNQFIWQSRRD 332 (706)
T ss_dssp CTTCEEEEEEECTTSSEEEEEEECTT-SCEEEEEEEETTTCCEEEEEEEEEC-SSCCCCCSCCEECTTCSSEEEEEECTT
T ss_pred CCceeEeeEEEECCCCEEEEEEeCCC-CCeeEEEEEECCCCceeeEEEEccC-CCeECccCCceeecCCCCEEEEEEccC
Confidence 11124678999997334666554321 12357899999988 4433322111 10012346789999 997544433
Q ss_pred CCCeEEEEcCCCceEEEecCCCCCCcccccCccccCe-EEEccCc-eEEEEeCCCC----eEEEEeCCCCCCccceeEEE
Q 020019 169 TGSKIWKVGVKGEFLSIISSPLFTPKEWYKNLVGLNG-IVYHPDG-FLIVIHTFSG----NLFKIDIVDGVGEGEEIKLI 242 (332)
Q Consensus 169 ~~~~I~~v~~~g~~~~~~~~~~~~~p~~~~~~~~~nG-i~~~~dG-~Lyva~~~~~----~i~~id~~~~~~~~~~~~~v 242 (332)
+...||.++.+++....+.... ..... +++++|| .||++....+ +||+++++++ ..+.+
T Consensus 333 g~~~l~~~~~~~~~~~~l~~~~----------~~v~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~~-----~~~~l 397 (706)
T 2z3z_A 333 GWNHLYLYDTTGRLIRQVTKGE----------WEVTNFAGFDPKGTRLYFESTEASPLERHFYCIDIKGG-----KTKDL 397 (706)
T ss_dssp SSCEEEEEETTSCEEEECCCSS----------SCEEEEEEECTTSSEEEEEESSSCTTCBEEEEEETTCC-----CCEES
T ss_pred CccEEEEEECCCCEEEecCCCC----------eEEEeeeEEcCCCCEEEEEecCCCCceEEEEEEEcCCC-----Cceec
Confidence 3457999997776544332211 11234 7899999 8988877655 8999999876 23323
Q ss_pred EecCCCCCCCCeEEEeCCCeEEEE
Q 020019 243 RVAGGPLSFGDGLELLSPTKLVVA 266 (332)
Q Consensus 243 ~~~g~~~~~pdGi~~~~dG~l~va 266 (332)
.. ......+++.+||+.++.
T Consensus 398 ~~----~~~~~~~~~spdg~~l~~ 417 (706)
T 2z3z_A 398 TP----ESGMHRTQLSPDGSAIID 417 (706)
T ss_dssp CC----SSSEEEEEECTTSSEEEE
T ss_pred cC----CCceEEEEECCCCCEEEE
Confidence 21 123457889999885554
|
| >3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum} | Back alignment and structure |
|---|
Probab=98.59 E-value=0.00021 Score=65.90 Aligned_cols=246 Identities=9% Similarity=0.090 Sum_probs=137.9
Q ss_pred EecCCccccceEEcCCCCEEEEEecCCeEEEEECCCCCCCccceeeeEEecccCcCCCccceEEEeCCCCeEEEEEeCcC
Q 020019 40 YHSSSFFRECAKWDDSGRRFIVSFLDGGIGQVAVPDDYPPGTVLEEVTLVKDLELTGNGSLGLVLDHPRNRLLVVAADVF 119 (332)
Q Consensus 40 ~~~~~~~pegia~d~~g~~~~~~~~~g~I~~vd~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~vd~~~g~l~v~~~~~~ 119 (332)
+.+.......++|+++|+++++...++.|..++..+++. .. .+.... .....++++++ |++.++.....
T Consensus 62 l~gH~~~V~~~~~sp~~~~l~s~s~D~~v~iWd~~~~~~----~~--~~~~h~----~~v~~~~~s~~-g~~las~~~d~ 130 (380)
T 3iz6_a 62 LQGHSGKVYSLDWTPEKNWIVSASQDGRLIVWNALTSQK----TH--AIKLHC----PWVMECAFAPN-GQSVACGGLDS 130 (380)
T ss_dssp ECCCSSCEEEEEECTTSSCEEEEETTSEEEEEETTTTEE----EE--EEECCC----TTCCCCEECTT-SSEEEECCSSS
T ss_pred ccccccEEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcc----ce--EEecCC----CCEEEEEECCC-CCEEEEeeCCC
Confidence 344444567899999999888888889999999876542 11 111110 12233444443 32222110000
Q ss_pred ---------------------------------------C------CccceEEEEECCCCcEEEEEecCCCCCCCCCccc
Q 020019 120 ---------------------------------------G------NKYSAVAAYDLSTWNRLFLTQLSGPSDGKSCADD 154 (332)
Q Consensus 120 ---------------------------------------~------~~~~~l~~~d~~~g~~~~~~~l~~~~~~~~~~nd 154 (332)
. ...+.+..||.++++.........+.........
T Consensus 131 ~v~iw~~~~~~~~~~~~~~~~~~~gh~~~v~~~~~~~~~~~~l~s~s~D~~i~~wd~~~~~~~~~~~~~~~~~h~~~v~~ 210 (380)
T 3iz6_a 131 ACSIFNLSSQADRDGNMPVSRVLTGHKGYASSCQYVPDQETRLITGSGDQTCVLWDVTTGQRISIFGSEFPSGHTADVLS 210 (380)
T ss_dssp CCEEEECCCCSSCCCSSTTCCBCCCCSSCCCCCBCCSSSSSCEEEECTTSCEEEECTTTCCEEEEECCCSSSSCCSCEEE
T ss_pred cEEEEECCCCccccCCccceeeccCCCcceEEEEEecCCCCEEEEECCCCcEEEEEcCCCcEEEEeecccCCCCccCeEE
Confidence 0 0134577888888776554432111111234556
Q ss_pred eEECC-CCcEEEEeCCCCeEEEEcCC--CceEEEecCCCCCCcccccCccccCeEEEccCceEEEEeCCCCeEEEEeCCC
Q 020019 155 VTVDA-EGNAYVTDVTGSKIWKVGVK--GEFLSIISSPLFTPKEWYKNLVGLNGIVYHPDGFLIVIHTFSGNLFKIDIVD 231 (332)
Q Consensus 155 iavd~-dG~lyvtd~~~~~I~~v~~~--g~~~~~~~~~~~~~p~~~~~~~~~nGi~~~~dG~Lyva~~~~~~i~~id~~~ 231 (332)
+++.+ +++++++-+..+.|..+|.. ++....+.. .....+.++|+|+|..+++-...+.|..+|+.+
T Consensus 211 ~~~~~~~~~~l~sgs~D~~v~~wd~~~~~~~~~~~~~----------h~~~v~~v~~~p~~~~l~s~s~D~~i~lwd~~~ 280 (380)
T 3iz6_a 211 LSINSLNANMFISGSCDTTVRLWDLRITSRAVRTYHG----------HEGDINSVKFFPDGQRFGTGSDDGTCRLFDMRT 280 (380)
T ss_dssp EEECSSSCCEEEEEETTSCEEEEETTTTCCCCEEECC----------CSSCCCEEEECTTSSEEEEECSSSCEEEEETTT
T ss_pred EEeecCCCCEEEEEECCCeEEEEECCCCCcceEEECC----------cCCCeEEEEEecCCCeEEEEcCCCeEEEEECCC
Confidence 77766 67888888888888888764 232222211 113467999999997777777888999999987
Q ss_pred CCCccceeEEEEecC----CCCCCCCeEEEeCCCeEEEEeC--CceEEEEcCCCceEEEEEeeecCCCcccceEEEE-EC
Q 020019 232 GVGEGEEIKLIRVAG----GPLSFGDGLELLSPTKLVVAGN--PSARLVESSDGWETAAVVAKFSGPVHRLATAATV-KD 304 (332)
Q Consensus 232 ~~~~~~~~~~v~~~g----~~~~~pdGi~~~~dG~l~va~~--~~~~~v~~~dg~~~~~~~~~~~~~~~~~pt~va~-~~ 304 (332)
+. .+..+.... ........+++.++|+++++.. +..++-....+.....+ ...........+++++ .+
T Consensus 281 ~~----~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~dg~i~vwd~~~~~~~~~~-~~~~~~h~~~v~~l~~s~d 355 (380)
T 3iz6_a 281 GH----QLQVYNREPDRNDNELPIVTSVAFSISGRLLFAGYSNGDCYVWDTLLAEMVLNL-GTLQNSHEGRISCLGLSSD 355 (380)
T ss_dssp TE----EEEEECCCCSSSCCSSCSCSEEEECSSSSEEEEECTTSCEEEEETTTCCEEEEE-CCSCSSCCCCCCEEEECSS
T ss_pred Cc----EEEEecccccccccccCceEEEEECCCCCEEEEEECCCCEEEEECCCCceEEEE-ecccCCCCCceEEEEECCC
Confidence 62 343333210 1123357899999999888863 33343344455222122 1111111233577888 66
Q ss_pred CeEEEEE
Q 020019 305 GRVYLNH 311 (332)
Q Consensus 305 g~lyv~~ 311 (332)
+.++++.
T Consensus 356 g~~l~sg 362 (380)
T 3iz6_a 356 GSALCTG 362 (380)
T ss_dssp SSEEEEE
T ss_pred CCEEEEe
Confidence 6655543
|
| >2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia} | Back alignment and structure |
|---|
Probab=98.59 E-value=5.7e-06 Score=83.15 Aligned_cols=191 Identities=15% Similarity=0.163 Sum_probs=111.1
Q ss_pred cccceEEcCCCCEEEEEec-CC-----eEEEEECCCCCCCccceeeeEEecccCcC--------------------C-Cc
Q 020019 46 FRECAKWDDSGRRFIVSFL-DG-----GIGQVAVPDDYPPGTVLEEVTLVKDLELT--------------------G-NG 98 (332)
Q Consensus 46 ~pegia~d~~g~~~~~~~~-~g-----~I~~vd~~~~~~~~~~~~~~~~~~~~~~~--------------------~-~~ 98 (332)
.+..+++++||+.++.... ++ .|+.++..+++. . .+....... + ..
T Consensus 38 ~~~~~~~SpdG~~la~~~~~d~~~~~~~i~~~d~~~g~~-----~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 110 (741)
T 2ecf_A 38 TLMKPKVAPDGSRVTFLRGKDSDRNQLDLWSYDIGSGQT-----R--LLVDSKVVLPGTETLSDEEKARRERQRIAAMTG 110 (741)
T ss_dssp CCEEEEECTTSSEEEEEECCSSCTTEEEEEEEETTTCCE-----E--EEECGGGTC--------------------CCEE
T ss_pred CCCCceEecCCCEEEEEeccCCCCcccEEEEEECCCCce-----e--EccchhhcccccccccchhhhhhhhhhhccccC
Confidence 4678999999997665533 55 899999887752 1 222211110 0 12
Q ss_pred cceEEEeCCCCe-EEEEEeCcCCCccceEEEEECCCC---cEEEEEecCCCCCCCCCccceEECCCCc-EEEEeCCCCeE
Q 020019 99 SLGLVLDHPRNR-LLVVAADVFGNKYSAVAAYDLSTW---NRLFLTQLSGPSDGKSCADDVTVDAEGN-AYVTDVTGSKI 173 (332)
Q Consensus 99 ~~gi~vd~~~g~-l~v~~~~~~~~~~~~l~~~d~~~g---~~~~~~~l~~~~~~~~~~ndiavd~dG~-lyvtd~~~~~I 173 (332)
...++++|+ |+ |+++.. +.|+.||.+++ +.. .+. ........+++.|||+ |+++. .+.|
T Consensus 111 v~~~~~SpD-g~~l~~~~~-------~~i~~~d~~~~~~~~~~---~l~---~~~~~~~~~~~SPDG~~la~~~--~~~i 174 (741)
T 2ecf_A 111 IVDYQWSPD-AQRLLFPLG-------GELYLYDLKQEGKAAVR---QLT---HGEGFATDAKLSPKGGFVSFIR--GRNL 174 (741)
T ss_dssp SCCCEECTT-SSEEEEEET-------TEEEEEESSSCSTTSCC---BCC---CSSSCEEEEEECTTSSEEEEEE--TTEE
T ss_pred cceeEECCC-CCEEEEEeC-------CcEEEEECCCCCcceEE---Ecc---cCCcccccccCCCCCCEEEEEe--CCcE
Confidence 568899997 65 444432 57899999887 443 231 1124577899999997 54443 3589
Q ss_pred EEEcCCC-ceEEEecCCCCCC----ccc--ccCccccCeEEEccCc-eEEEEeCCCC-----------------------
Q 020019 174 WKVGVKG-EFLSIISSPLFTP----KEW--YKNLVGLNGIVYHPDG-FLIVIHTFSG----------------------- 222 (332)
Q Consensus 174 ~~v~~~g-~~~~~~~~~~~~~----p~~--~~~~~~~nGi~~~~dG-~Lyva~~~~~----------------------- 222 (332)
+.++.++ +..++........ +.+ ........+++|+||| .|+++....+
T Consensus 175 ~~~d~~~g~~~~~~~~~~~~~~~g~~~~v~~~~~~~~~~~~~SpDg~~l~~~~~d~~~~~~~~~~~~~p~~~~~~~~~~~ 254 (741)
T 2ecf_A 175 WVIDLASGRQMQLTADGSTTIGNGIAEFVADEEMDRHTGYWWAPDDSAIAYARIDESPVPVQKRYEVYADRTDVIEQRYP 254 (741)
T ss_dssp EEEETTTTEEEECCCCCCSSEEESCCCHHHHHHSCCCCSEEECTTSSCEEEEEEECTTSCEEEEEEECSSCEEEEEEECC
T ss_pred EEEecCCCCEEEeccCCccceeccccceeeeeccccccceEECCCCCEEEEEEEcCCCCceEecCCCCCCcccceEeecC
Confidence 9999875 4333321111000 000 0011225789999999 7888754332
Q ss_pred ---------eEEEEeCCC-CCCccceeEEEEecCCCCCCCCeEEEeCCCeEEE
Q 020019 223 ---------NLFKIDIVD-GVGEGEEIKLIRVAGGPLSFGDGLELLSPTKLVV 265 (332)
Q Consensus 223 ---------~i~~id~~~-~~~~~~~~~~v~~~g~~~~~pdGi~~~~dG~l~v 265 (332)
+|+.+++++ ++ ...+............+++ +||+.++
T Consensus 255 ~~g~~~~~~~l~~~d~~~~~~-----~~~~~~~~~~~~~~~~~~~-pDg~~l~ 301 (741)
T 2ecf_A 255 AAGDANVQVKLGVISPAEQAQ-----TQWIDLGKEQDIYLARVNW-RDPQHLS 301 (741)
T ss_dssp BTTSCCCEEEEEEECSSTTCC-----CEEECCCSCSSEEEEEEEE-EETTEEE
T ss_pred CCCCCCCeeEEEEEECCCCCc-----eEEecCCCCcceEEEEEEe-CCCCEEE
Confidence 677788876 62 2223221011234567889 9987444
|
| >1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 | Back alignment and structure |
|---|
Probab=98.59 E-value=0.00011 Score=68.22 Aligned_cols=207 Identities=12% Similarity=0.097 Sum_probs=123.3
Q ss_pred ccceEEcCCCCEEEEEecCCeEEEEECCCCCCCccceeeeEEecccCcCCCccceEEEeCCCCeEEEEEeCcCCCccceE
Q 020019 47 RECAKWDDSGRRFIVSFLDGGIGQVAVPDDYPPGTVLEEVTLVKDLELTGNGSLGLVLDHPRNRLLVVAADVFGNKYSAV 126 (332)
Q Consensus 47 pegia~d~~g~~~~~~~~~g~I~~vd~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~vd~~~g~l~v~~~~~~~~~~~~l 126 (332)
...++++++|+.+++...++.|..+|..+++. .. .+.... .....+++.++ +..+++... .+.+
T Consensus 126 v~~v~~s~dg~~l~s~~~d~~i~iwd~~~~~~----~~--~~~~h~----~~v~~~~~~p~-~~~l~s~s~-----d~~v 189 (393)
T 1erj_A 126 IRSVCFSPDGKFLATGAEDRLIRIWDIENRKI----VM--ILQGHE----QDIYSLDYFPS-GDKLVSGSG-----DRTV 189 (393)
T ss_dssp EEEEEECTTSSEEEEEETTSCEEEEETTTTEE----EE--EECCCS----SCEEEEEECTT-SSEEEEEET-----TSEE
T ss_pred EEEEEECCCCCEEEEEcCCCeEEEEECCCCcE----EE--EEccCC----CCEEEEEEcCC-CCEEEEecC-----CCcE
Confidence 45789999999888877789999999876642 11 221111 25688999997 554444332 3578
Q ss_pred EEEECCCCcEEEEEecCCCCCCCCCccceEECC-CCcEEEEeCCCCeEEEEcCC-CceEEEecCCCCCCcccccCccccC
Q 020019 127 AAYDLSTWNRLFLTQLSGPSDGKSCADDVTVDA-EGNAYVTDVTGSKIWKVGVK-GEFLSIISSPLFTPKEWYKNLVGLN 204 (332)
Q Consensus 127 ~~~d~~~g~~~~~~~l~~~~~~~~~~ndiavd~-dG~lyvtd~~~~~I~~v~~~-g~~~~~~~~~~~~~p~~~~~~~~~n 204 (332)
..||.++++....... ......+++.| +|+++++-+..+.|..+|.. ++....+....... ........
T Consensus 190 ~iwd~~~~~~~~~~~~------~~~v~~~~~~~~~~~~l~~~s~d~~v~iwd~~~~~~~~~~~~~~~~~---~~h~~~v~ 260 (393)
T 1erj_A 190 RIWDLRTGQCSLTLSI------EDGVTTVAVSPGDGKYIAAGSLDRAVRVWDSETGFLVERLDSENESG---TGHKDSVY 260 (393)
T ss_dssp EEEETTTTEEEEEEEC------SSCEEEEEECSTTCCEEEEEETTSCEEEEETTTCCEEEEEC---------CCCSSCEE
T ss_pred EEEECCCCeeEEEEEc------CCCcEEEEEECCCCCEEEEEcCCCcEEEEECCCCcEEEeecccccCC---CCCCCCEE
Confidence 8999998876655443 13456788998 78888888888888888876 44433321110000 00123457
Q ss_pred eEEEccCceEEEEeCCCCeEEEEeCCCCCCcc------ceeEEEEecCCCCCCCCeEEEeCCCeEEEEeC--CceEEEEc
Q 020019 205 GIVYHPDGFLIVIHTFSGNLFKIDIVDGVGEG------EEIKLIRVAGGPLSFGDGLELLSPTKLVVAGN--PSARLVES 276 (332)
Q Consensus 205 Gi~~~~dG~Lyva~~~~~~i~~id~~~~~~~~------~~~~~v~~~g~~~~~pdGi~~~~dG~l~va~~--~~~~~v~~ 276 (332)
.++|+++|.++++-...++|..+++....... .........+ .......+++.++|+++++.. ...++-..
T Consensus 261 ~v~~~~~g~~l~s~s~d~~v~~wd~~~~~~~~~~~~~~~~~~~~~~~~-h~~~v~~~~~~~~~~~l~sgs~D~~v~iwd~ 339 (393)
T 1erj_A 261 SVVFTRDGQSVVSGSLDRSVKLWNLQNANNKSDSKTPNSGTCEVTYIG-HKDFVLSVATTQNDEYILSGSKDRGVLFWDK 339 (393)
T ss_dssp EEEECTTSSEEEEEETTSEEEEEEC---------------CEEEEEEC-CSSCEEEEEECGGGCEEEEEETTSEEEEEET
T ss_pred EEEECCCCCEEEEEeCCCEEEEEECCCCCCcccccCCCCCcceEEEec-ccCcEEEEEECCCCCEEEEEeCCCeEEEEEC
Confidence 89999999555566677888888876431100 0011111221 223345788888888777753 22333344
Q ss_pred CCC
Q 020019 277 SDG 279 (332)
Q Consensus 277 ~dg 279 (332)
.++
T Consensus 340 ~~~ 342 (393)
T 1erj_A 340 KSG 342 (393)
T ss_dssp TTC
T ss_pred CCC
Confidence 555
|
| >3amr_A 3-phytase; beta-propeller, phytate, MYO-inositol hexasulfate, hydrolase-hydrolase inhibitor complex; HET: IHS; 1.25A {Bacillus subtilis} PDB: 3ams_A* 2poo_A 1poo_A 1qlg_A 1h6l_A 1cvm_A | Back alignment and structure |
|---|
Probab=98.58 E-value=2e-05 Score=72.33 Aligned_cols=139 Identities=20% Similarity=0.393 Sum_probs=85.8
Q ss_pred CccceEEE--eCCCCeEEEEEeCcCCCccceEEEEEC---CCC----cEEEEEecCCCCCCCCCccceEECCC-CcEEEE
Q 020019 97 NGSLGLVL--DHPRNRLLVVAADVFGNKYSAVAAYDL---STW----NRLFLTQLSGPSDGKSCADDVTVDAE-GNAYVT 166 (332)
Q Consensus 97 ~~~~gi~v--d~~~g~l~v~~~~~~~~~~~~l~~~d~---~~g----~~~~~~~l~~~~~~~~~~ndiavd~d-G~lyvt 166 (332)
..|.||++ ++..+++|+.-.+ +.+.+..|++ ..| ++++.+.+. +-+-++++|+. |.||++
T Consensus 128 ~~pyGlcly~~~~~g~~yafV~~----k~G~~~q~~l~~~~~g~~~~~lVR~f~lg------sq~EgcvvDd~~g~Lyv~ 197 (355)
T 3amr_A 128 NEVYGFTLYHSQKTGKYYAMVTG----KEGEFEQYELKADKNGYISGKKVRAFKMN------SQTEGMAADDEYGRLYIA 197 (355)
T ss_dssp SSCCCEEEEECTTTCCEEEEEEC----SSSEEEEEEEEECTTSCEEEEEEEEEECS------SCEEEEEEETTTTEEEEE
T ss_pred CCeeEEEEEecCCCCcEEEEEEC----CCCeEEEEEEEeCCCCcccceEEEEecCC------CCcceEEEcCCCCeEEEe
Confidence 47899999 7765764444332 2345666655 333 334445552 35778999986 789999
Q ss_pred eCCCCeEEEEcCC--C----ceEEEecCCCCCCcccccCccccCeEEEc--cC--ceEEEEeCCCCeEEEEeCC-CCCCc
Q 020019 167 DVTGSKIWKVGVK--G----EFLSIISSPLFTPKEWYKNLVGLNGIVYH--PD--GFLIVIHTFSGNLFKIDIV-DGVGE 235 (332)
Q Consensus 167 d~~~~~I~~v~~~--g----~~~~~~~~~~~~~p~~~~~~~~~nGi~~~--~d--G~Lyva~~~~~~i~~id~~-~~~~~ 235 (332)
+...+ ||+++.+ + +....+....+. ..+-||++. ++ |+|++++.++++...++.+ +.
T Consensus 198 eEd~G-Iw~~da~p~~~~~~~~v~~~~~g~l~--------aDvEGLai~~~~~g~gyLivSsQG~~s~~Vydr~~~~--- 265 (355)
T 3amr_A 198 EEDEA-IWKFSAEPDGGSNGTVIDRADGRHLT--------RDIEGLTIYYAADGKGYLMASSQGNSSYAIYDRQGKN--- 265 (355)
T ss_dssp ETTTE-EEEEECSTTSCSCCEEEEEBSSSSBC--------SCEEEEEEEECGGGCEEEEEEEGGGTEEEEEESSTTC---
T ss_pred cccce-EEEEeCCcCCCCCceEEEEecCCccc--------cCcceEEEEecCCCCEEEEEEcCCCCEEEEEECCCCC---
Confidence 99855 9999954 3 222222222221 135699984 44 4799999999999999987 33
Q ss_pred cceeEEEEecCCC----CCCCCeEEEe
Q 020019 236 GEEIKLIRVAGGP----LSFGDGLELL 258 (332)
Q Consensus 236 ~~~~~~v~~~g~~----~~~pdGi~~~ 258 (332)
+.+..+.+...+ ....||+++.
T Consensus 266 -~~vg~f~Ig~~~~idgv~eTDG~~v~ 291 (355)
T 3amr_A 266 -KYVADFRITDGPETDGTSDTDGIDVL 291 (355)
T ss_dssp -CEEEEEEECCCSSSCCCCSCCCEEEE
T ss_pred -cEEEEEEecCCCCceeeeccCcceEE
Confidence 245555543111 2346666553
|
| >1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1 | Back alignment and structure |
|---|
Probab=98.57 E-value=5.9e-05 Score=70.55 Aligned_cols=222 Identities=11% Similarity=0.068 Sum_probs=135.1
Q ss_pred cccceEEcCCCCEEEEEecCCeEEEEECCCCCCCccceeeeEEecccCcCCCccceEEEeCCCCeEEEEEeCcCCCccce
Q 020019 46 FRECAKWDDSGRRFIVSFLDGGIGQVAVPDDYPPGTVLEEVTLVKDLELTGNGSLGLVLDHPRNRLLVVAADVFGNKYSA 125 (332)
Q Consensus 46 ~pegia~d~~g~~~~~~~~~g~I~~vd~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~vd~~~g~l~v~~~~~~~~~~~~ 125 (332)
....++++++|+++++...++.|..+|..+++. .. ++... ......+++.++ +..+++.. ..+.
T Consensus 152 ~V~~v~~~~~~~~l~sgs~D~~i~iwd~~~~~~----~~--~~~~h----~~~V~~v~~~p~-~~~l~s~s-----~D~~ 215 (410)
T 1vyh_C 152 SVQDISFDHSGKLLASCSADMTIKLWDFQGFEC----IR--TMHGH----DHNVSSVSIMPN-GDHIVSAS-----RDKT 215 (410)
T ss_dssp CEEEEEECTTSSEEEEEETTSCCCEEETTSSCE----EE--CCCCC----SSCEEEEEECSS-SSEEEEEE-----TTSE
T ss_pred cEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCce----eE--EEcCC----CCCEEEEEEeCC-CCEEEEEe-----CCCe
Confidence 345688999999888777789999998875541 11 12111 125688999997 65444433 2457
Q ss_pred EEEEECCCCcEEEEEecCCCCCCCCCccceEECCCCcEEEEeCCCCeEEEEcCC-CceEEEecCCCCCCcccccCccccC
Q 020019 126 VAAYDLSTWNRLFLTQLSGPSDGKSCADDVTVDAEGNAYVTDVTGSKIWKVGVK-GEFLSIISSPLFTPKEWYKNLVGLN 204 (332)
Q Consensus 126 l~~~d~~~g~~~~~~~l~~~~~~~~~~ndiavd~dG~lyvtd~~~~~I~~v~~~-g~~~~~~~~~~~~~p~~~~~~~~~n 204 (332)
+..||.++++....+.- . ....+.+++.++|+++++-+..+.|..++.. ++....+... ....+
T Consensus 216 i~~wd~~~~~~~~~~~~--h---~~~v~~~~~~~~g~~l~s~s~D~~v~vwd~~~~~~~~~~~~h----------~~~v~ 280 (410)
T 1vyh_C 216 IKMWEVQTGYCVKTFTG--H---REWVRMVRPNQDGTLIASCSNDQTVRVWVVATKECKAELREH----------RHVVE 280 (410)
T ss_dssp EEEEETTTCCEEEEEEC--C---SSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEEECCC----------SSCEE
T ss_pred EEEEECCCCcEEEEEeC--C---CccEEEEEECCCCCEEEEEcCCCeEEEEECCCCceeeEecCC----------CceEE
Confidence 88999999886554432 1 2456778999999999988888888888865 3333222111 11235
Q ss_pred eEEEccC--------------------ceEEEEeCCCCeEEEEeCCCCCCccceeEEEEecCCCCCCCCeEEEeCCCeEE
Q 020019 205 GIVYHPD--------------------GFLIVIHTFSGNLFKIDIVDGVGEGEEIKLIRVAGGPLSFGDGLELLSPTKLV 264 (332)
Q Consensus 205 Gi~~~~d--------------------G~Lyva~~~~~~i~~id~~~~~~~~~~~~~v~~~g~~~~~pdGi~~~~dG~l~ 264 (332)
.++|+|+ |.+.++-...+.|..+|+.++ ..+..+.. ......++++.++|+++
T Consensus 281 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~sgs~D~~i~iwd~~~~----~~~~~~~~---h~~~v~~v~~~~~g~~l 353 (410)
T 1vyh_C 281 CISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTG----MCLMTLVG---HDNWVRGVLFHSGGKFI 353 (410)
T ss_dssp EEEECCSCGGGGGGGCCSCC-------CCEEEEEETTSEEEEEETTTT----EEEEEEEC---CSSCEEEEEECSSSSCE
T ss_pred EEEEcCcccccchhhhccccccccCCCCCEEEEEeCCCeEEEEECCCC----ceEEEEEC---CCCcEEEEEEcCCCCEE
Confidence 6667665 545666667788988998876 23433331 22445689999998877
Q ss_pred EEeC-C-ceEEEEcCCCceEEEEEeeecCCCcccceEEEE-ECCeEEEE
Q 020019 265 VAGN-P-SARLVESSDGWETAAVVAKFSGPVHRLATAATV-KDGRVYLN 310 (332)
Q Consensus 265 va~~-~-~~~~v~~~dg~~~~~~~~~~~~~~~~~pt~va~-~~g~lyv~ 310 (332)
++.. . ..++-....+... ..+..- -...+++++ .++.+.++
T Consensus 354 ~s~s~D~~i~vwd~~~~~~~----~~~~~h-~~~v~~l~~~~~~~~l~s 397 (410)
T 1vyh_C 354 LSCADDKTLRVWDYKNKRCM----KTLNAH-EHFVTSLDFHKTAPYVVT 397 (410)
T ss_dssp EEEETTTEEEEECCTTSCCC----EEEECC-SSCEEEEEECSSSSCEEE
T ss_pred EEEeCCCeEEEEECCCCceE----EEEcCC-CCcEEEEEEcCCCCEEEE
Confidence 7653 2 2333333444122 222211 123477888 55555443
|
| >2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A | Back alignment and structure |
|---|
Probab=98.55 E-value=0.00015 Score=64.68 Aligned_cols=222 Identities=10% Similarity=0.049 Sum_probs=134.9
Q ss_pred cccceEEcCCCCEEEEEecCCeEEEEECCCCCCCccceeeeEEecccCcCCCccceEEEeCCCCeEEEEEeCcCCCccce
Q 020019 46 FRECAKWDDSGRRFIVSFLDGGIGQVAVPDDYPPGTVLEEVTLVKDLELTGNGSLGLVLDHPRNRLLVVAADVFGNKYSA 125 (332)
Q Consensus 46 ~pegia~d~~g~~~~~~~~~g~I~~vd~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~vd~~~g~l~v~~~~~~~~~~~~ 125 (332)
....+++.++++.+++...++.|..++..+++. .. .+.... .....++++++ +.++++... .+.
T Consensus 57 ~v~~~~~~~~~~~l~s~s~d~~i~vwd~~~~~~----~~--~~~~h~----~~v~~~~~~~~-~~~l~sgs~-----D~~ 120 (304)
T 2ynn_A 57 PVRAGKFIARKNWIIVGSDDFRIRVFNYNTGEK----VV--DFEAHP----DYIRSIAVHPT-KPYVLSGSD-----DLT 120 (304)
T ss_dssp CEEEEEEEGGGTEEEEEETTSEEEEEETTTCCE----EE--EEECCS----SCEEEEEECSS-SSEEEEEET-----TSC
T ss_pred cEEEEEEeCCCCEEEEECCCCEEEEEECCCCcE----EE--EEeCCC----CcEEEEEEcCC-CCEEEEECC-----CCe
Confidence 345688999999888888889999999887652 11 232222 25789999997 654444332 356
Q ss_pred EEEEECCCCcEEEEEecCCCCCCCCCccceEECC-CCcEEEEeCCCCeEEEEcCCC-ce-EEEecCCCCCCcccccCccc
Q 020019 126 VAAYDLSTWNRLFLTQLSGPSDGKSCADDVTVDA-EGNAYVTDVTGSKIWKVGVKG-EF-LSIISSPLFTPKEWYKNLVG 202 (332)
Q Consensus 126 l~~~d~~~g~~~~~~~l~~~~~~~~~~ndiavd~-dG~lyvtd~~~~~I~~v~~~g-~~-~~~~~~~~~~~p~~~~~~~~ 202 (332)
+..||.+++.... ..+.+ .......+++.| +++++++-+..+.|..+|... +. ..+... ....
T Consensus 121 v~lWd~~~~~~~~-~~~~~---h~~~v~~v~~~p~~~~~l~sgs~D~~v~iwd~~~~~~~~~~~~~----------~~~~ 186 (304)
T 2ynn_A 121 VKLWNWENNWALE-QTFEG---HEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNFTLTTG----------QERG 186 (304)
T ss_dssp EEEEEGGGTTEEE-EEECC---CCSCEEEEEECTTCTTEEEEEETTSEEEEEETTCSSCSEEEECC----------CTTC
T ss_pred EEEEECCCCcchh-hhhcc---cCCcEEEEEECCCCCCEEEEEeCCCeEEEEECCCCCccceeccC----------CcCc
Confidence 8899998764332 12321 134567899998 568888888888888888642 21 111111 0122
Q ss_pred cCeEEEcc--CceEEEEeCCCCeEEEEeCCCCCCccceeEEEEecCCCCCCCCeEEEeCCCeEEEEeC--CceEEEEcCC
Q 020019 203 LNGIVYHP--DGFLIVIHTFSGNLFKIDIVDGVGEGEEIKLIRVAGGPLSFGDGLELLSPTKLVVAGN--PSARLVESSD 278 (332)
Q Consensus 203 ~nGi~~~~--dG~Lyva~~~~~~i~~id~~~~~~~~~~~~~v~~~g~~~~~pdGi~~~~dG~l~va~~--~~~~~v~~~d 278 (332)
.+.+.+.+ ++.+.++-...+.|..+|+.++ +.+..+.. .......+++.+++.++++.. +..++-....
T Consensus 187 v~~~~~~~~~~~~~l~s~s~D~~i~iWd~~~~----~~~~~~~~---h~~~v~~~~~~p~~~~l~s~s~Dg~i~iWd~~~ 259 (304)
T 2ynn_A 187 VNYVDYYPLPDKPYMITASDDLTIKIWDYQTK----SCVATLEG---HMSNVSFAVFHPTLPIIISGSEDGTLKIWNSST 259 (304)
T ss_dssp EEEEEECCSTTCCEEEEEETTSEEEEEETTTT----EEEEEEEC---CSSCEEEEEECSSSSEEEEEETTSCEEEEETTT
T ss_pred EEEEEEEEcCCCCEEEEEcCCCeEEEEeCCCC----ccceeeCC---CCCCEEEEEECCCCCEEEEEcCCCeEEEEECCC
Confidence 34567765 6656666667888988998876 23443432 334456788999988777753 3344434555
Q ss_pred CceEEEEEeeecCCCcccceEEEE-E-CCeEEE
Q 020019 279 GWETAAVVAKFSGPVHRLATAATV-K-DGRVYL 309 (332)
Q Consensus 279 g~~~~~~~~~~~~~~~~~pt~va~-~-~g~lyv 309 (332)
+ ++...+... .....++++ . +++.|+
T Consensus 260 ~----~~~~~~~~~-~~~~~~~~~~~~~~~~~~ 287 (304)
T 2ynn_A 260 Y----KVEKTLNVG-LERSWCIATHPTGRKNYI 287 (304)
T ss_dssp C----CEEEEECCS-SSSEEEEEECTTCGGGCE
T ss_pred C----ceeeeccCC-CccEEEEEECCCCCceEE
Confidence 5 333333321 334467776 3 344444
|
| >4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis} | Back alignment and structure |
|---|
Probab=98.55 E-value=4.3e-06 Score=76.91 Aligned_cols=186 Identities=8% Similarity=0.034 Sum_probs=121.2
Q ss_pred cccceEEcCCCCEEEEEecCCeEEEEECCCCCCCccceeeeEEecccCcCCCccceEEEeCCCCeEEEEEeCcCCCccce
Q 020019 46 FRECAKWDDSGRRFIVSFLDGGIGQVAVPDDYPPGTVLEEVTLVKDLELTGNGSLGLVLDHPRNRLLVVAADVFGNKYSA 125 (332)
Q Consensus 46 ~pegia~d~~g~~~~~~~~~g~I~~vd~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~vd~~~g~l~v~~~~~~~~~~~~ 125 (332)
....+++.++|+.+++...++.|..+|..+++. .. .+.... .....+++.++...++++... .+.
T Consensus 141 ~V~~v~~spdg~~l~sgs~dg~v~iwd~~~~~~----~~--~~~~h~----~~v~~v~~s~~~~~~~~s~~~-----dg~ 205 (357)
T 4g56_B 141 IVKTLSVFSDGTQAVSGGKDFSVKVWDLSQKAV----LK--SYNAHS----SEVNCVAACPGKDTIFLSCGE-----DGR 205 (357)
T ss_dssp CEEEEEECSSSSEEEEEETTSCEEEEETTTTEE----EE--EECCCS----SCEEEEEECTTCSSCEEEEET-----TSC
T ss_pred CEEEEEECCCCCEEEEEeCCCeEEEEECCCCcE----EE--EEcCCC----CCEEEEEEccCCCceeeeecc-----CCc
Confidence 345789999999888877889999999876652 11 221111 256789998864445555432 356
Q ss_pred EEEEECCCCcEEEEEecCCCCCCCCCccceEECCCC-cEEEEeCCCCeEEEEcCC-CceEEEecCCCCCCcccccCcccc
Q 020019 126 VAAYDLSTWNRLFLTQLSGPSDGKSCADDVTVDAEG-NAYVTDVTGSKIWKVGVK-GEFLSIISSPLFTPKEWYKNLVGL 203 (332)
Q Consensus 126 l~~~d~~~g~~~~~~~l~~~~~~~~~~ndiavd~dG-~lyvtd~~~~~I~~v~~~-g~~~~~~~~~~~~~p~~~~~~~~~ 203 (332)
|..||.++++......+. ........+++.|++ +++++-...+.|..+|.. ++....+.. .....
T Consensus 206 v~~wd~~~~~~~~~~~~~---~~~~~v~~v~~sp~~~~~la~g~~d~~i~~wd~~~~~~~~~~~~----------~~~~v 272 (357)
T 4g56_B 206 ILLWDTRKPKPATRIDFC---ASDTIPTSVTWHPEKDDTFACGDETGNVSLVNIKNPDSAQTSAV----------HSQNI 272 (357)
T ss_dssp EEECCTTSSSCBCBCCCT---TCCSCEEEEEECTTSTTEEEEEESSSCEEEEESSCGGGCEEECC----------CSSCE
T ss_pred eEEEECCCCceeeeeeec---cccccccchhhhhcccceEEEeecccceeEEECCCCcEeEEEec----------cceeE
Confidence 889999988765433331 123557789999984 677777777888888865 443332211 11235
Q ss_pred CeEEEccCc-eEEEEeCCCCeEEEEeCCCCCCccceeEEEEecCCCCCCCCeEEEeC-CCeEEEEe
Q 020019 204 NGIVYHPDG-FLIVIHTFSGNLFKIDIVDGVGEGEEIKLIRVAGGPLSFGDGLELLS-PTKLVVAG 267 (332)
Q Consensus 204 nGi~~~~dG-~Lyva~~~~~~i~~id~~~~~~~~~~~~~v~~~g~~~~~pdGi~~~~-dG~l~va~ 267 (332)
+.|+|+|+| .+.++-...++|..+|.+++ +..+. .+ .-....++++.| |++++++.
T Consensus 273 ~~l~~sp~~~~~lasgs~D~~i~iwd~~~~----~~~~~---~~-H~~~V~~vafsP~d~~~l~s~ 330 (357)
T 4g56_B 273 TGLAYSYHSSPFLASISEDCTVAVLDADFS----EVFRD---LS-HRDFVTGVAWSPLDHSKFTTV 330 (357)
T ss_dssp EEEEECSSSSCCEEEEETTSCEEEECTTSC----EEEEE---CC-CSSCEEEEEECSSSTTEEEEE
T ss_pred EEEEEcCCCCCEEEEEeCCCEEEEEECCCC----cEeEE---CC-CCCCEEEEEEeCCCCCEEEEE
Confidence 789999998 66666667788988998876 22222 21 234567899987 77777764
|
| >1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A | Back alignment and structure |
|---|
Probab=98.54 E-value=3.6e-05 Score=76.02 Aligned_cols=227 Identities=11% Similarity=0.036 Sum_probs=131.7
Q ss_pred cccceEEcCCCCEEEEEecCCeEEEEECCCCCCCccceeeeEEecccCcCCCccceEEEeCCCCeEEEEEeCcCCCccce
Q 020019 46 FRECAKWDDSGRRFIVSFLDGGIGQVAVPDDYPPGTVLEEVTLVKDLELTGNGSLGLVLDHPRNRLLVVAADVFGNKYSA 125 (332)
Q Consensus 46 ~pegia~d~~g~~~~~~~~~g~I~~vd~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~vd~~~g~l~v~~~~~~~~~~~~ 125 (332)
.+..++++|+|+.++... .+.|..++..+++. .. .+.... .....++++|+ |++.++... .+.
T Consensus 20 ~~~~~~~spdg~~l~~~~-~~~v~l~~~~~~~~----~~--~~~~h~----~~v~~~~~spd-g~~lasg~~-----d~~ 82 (611)
T 1nr0_A 20 TAVVLGNTPAGDKIQYCN-GTSVYTVPVGSLTD----TE--IYTEHS----HQTTVAKTSPS-GYYCASGDV-----HGN 82 (611)
T ss_dssp CCCCCEECTTSSEEEEEE-TTEEEEEETTCSSC----CE--EECCCS----SCEEEEEECTT-SSEEEEEET-----TSE
T ss_pred ceeEEeeCCCCCEEEeCC-CCEEEEecCCCccc----Ce--EecCCC----CceEEEEECCC-CcEEEEEeC-----CCC
Confidence 677899999999776654 46888888875542 11 232111 25678999997 875554432 356
Q ss_pred EEEEECCCCcEEEEEecCCCCCCCCCccceEECCCCcEEEEeCC----CCeEEEEcCCCceEEEecCCCCCCcccccCcc
Q 020019 126 VAAYDLSTWNRLFLTQLSGPSDGKSCADDVTVDAEGNAYVTDVT----GSKIWKVGVKGEFLSIISSPLFTPKEWYKNLV 201 (332)
Q Consensus 126 l~~~d~~~g~~~~~~~l~~~~~~~~~~ndiavd~dG~lyvtd~~----~~~I~~v~~~g~~~~~~~~~~~~~p~~~~~~~ 201 (332)
+..||.++++......+.+. ....++++++|+|+..++-.. .+.|+.++. |+... .+. ....
T Consensus 83 v~lWd~~~~~~~~~~~~~~~---~~~v~~v~fs~dg~~l~~~~~~~~~~~~v~~wd~-~~~~~-----~l~-----gh~~ 148 (611)
T 1nr0_A 83 VRIWDTTQTTHILKTTIPVF---SGPVKDISWDSESKRIAAVGEGRERFGHVFLFDT-GTSNG-----NLT-----GQAR 148 (611)
T ss_dssp EEEEESSSTTCCEEEEEECS---SSCEEEEEECTTSCEEEEEECCSSCSEEEEETTT-CCBCB-----CCC-----CCSS
T ss_pred EEEeECCCCcceeeEeeccc---CCceEEEEECCCCCEEEEEECCCCceeEEEEeeC-CCCcc-----eec-----CCCC
Confidence 88999876543322333211 245778999999975554322 246666663 22211 111 0123
Q ss_pred ccCeEEEccCc-eEEEEeCCCCeEEEEeCCCCCCccceeEEEEecCCCCCCCCeEEEeCCCeEEEEeC--CceEEEEcCC
Q 020019 202 GLNGIVYHPDG-FLIVIHTFSGNLFKIDIVDGVGEGEEIKLIRVAGGPLSFGDGLELLSPTKLVVAGN--PSARLVESSD 278 (332)
Q Consensus 202 ~~nGi~~~~dG-~Lyva~~~~~~i~~id~~~~~~~~~~~~~v~~~g~~~~~pdGi~~~~dG~l~va~~--~~~~~v~~~d 278 (332)
..+.++|+|++ .++++-...+.|..++..++ +.... +. .+......+++.|||+++++.. ...++-...+
T Consensus 149 ~v~~v~f~p~~~~~l~s~s~D~~v~lwd~~~~----~~~~~--l~-~H~~~V~~v~fspdg~~las~s~D~~i~lwd~~~ 221 (611)
T 1nr0_A 149 AMNSVDFKPSRPFRIISGSDDNTVAIFEGPPF----KFKST--FG-EHTKFVHSVRYNPDGSLFASTGGDGTIVLYNGVD 221 (611)
T ss_dssp CEEEEEECSSSSCEEEEEETTSCEEEEETTTB----EEEEE--EC-CCSSCEEEEEECTTSSEEEEEETTSCEEEEETTT
T ss_pred CceEEEECCCCCeEEEEEeCCCeEEEEECCCC----eEeee--ec-cccCceEEEEECCCCCEEEEEECCCcEEEEECCC
Confidence 46799999998 56777777888888887654 12322 23 2334567899999999888753 3344445566
Q ss_pred CceEEEEEee-ecC-CCcccceEEEE-ECCeEEEE
Q 020019 279 GWETAAVVAK-FSG-PVHRLATAATV-KDGRVYLN 310 (332)
Q Consensus 279 g~~~~~~~~~-~~~-~~~~~pt~va~-~~g~lyv~ 310 (332)
+.....+... +.. ..-....++++ .++++.++
T Consensus 222 g~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~l~s 256 (611)
T 1nr0_A 222 GTKTGVFEDDSLKNVAHSGSVFGLTWSPDGTKIAS 256 (611)
T ss_dssp CCEEEECBCTTSSSCSSSSCEEEEEECTTSSEEEE
T ss_pred CcEeeeeccccccccccCCCEEEEEECCCCCEEEE
Confidence 6222222110 000 11123466777 55555543
|
| >4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A | Back alignment and structure |
|---|
Probab=98.54 E-value=4.4e-05 Score=70.39 Aligned_cols=191 Identities=16% Similarity=0.134 Sum_probs=110.3
Q ss_pred cceEEEeCCCCeE-EEEEeCcCCCccceEEEEECCCCcEEEEEecCCCCCCCCCccceEECCCCcEEEEeCCCCeEEEEc
Q 020019 99 SLGLVLDHPRNRL-LVVAADVFGNKYSAVAAYDLSTWNRLFLTQLSGPSDGKSCADDVTVDAEGNAYVTDVTGSKIWKVG 177 (332)
Q Consensus 99 ~~gi~vd~~~g~l-~v~~~~~~~~~~~~l~~~d~~~g~~~~~~~l~~~~~~~~~~ndiavd~dG~lyvtd~~~~~I~~v~ 177 (332)
...+++.|+ |++ .++... ..+.|.+||.++++....... .....++++.|||+++++-+... +.+++
T Consensus 136 ~~~v~fSpD-g~~la~as~~----~d~~i~iwd~~~~~~~~~~~~------~~~V~~v~fspdg~~l~s~s~~~-~~~~~ 203 (365)
T 4h5i_A 136 TKLVYISRE-GTVAAIASSK----VPAIMRIIDPSDLTEKFEIET------RGEVKDLHFSTDGKVVAYITGSS-LEVIS 203 (365)
T ss_dssp EEEEEECTT-SSCEEEEESC----SSCEEEEEETTTTEEEEEEEC------SSCCCEEEECTTSSEEEEECSSC-EEEEE
T ss_pred EEEEEEcCC-CCEEEEEECC----CCCEEEEeECCCCcEEEEeCC------CCceEEEEEccCCceEEecccee-EEEEE
Confidence 567899997 664 445432 235688999999887655442 23467899999998877766444 44444
Q ss_pred -CCCceEEEecCCCCCCcccccCccccCeEEEccCc-eEEEEeCCCC---eEEEEeCCCCCCccceeEEEEecCCCCCCC
Q 020019 178 -VKGEFLSIISSPLFTPKEWYKNLVGLNGIVYHPDG-FLIVIHTFSG---NLFKIDIVDGVGEGEEIKLIRVAGGPLSFG 252 (332)
Q Consensus 178 -~~g~~~~~~~~~~~~~p~~~~~~~~~nGi~~~~dG-~Lyva~~~~~---~i~~id~~~~~~~~~~~~~v~~~g~~~~~p 252 (332)
.+++....... .. .......++|+||| .+..+....+ .++.++...... ...+.....+ .....
T Consensus 204 ~~~~~~~~~~~~-~~-------~~~~v~~v~fspdg~~l~~~s~d~~~~~~i~~~~~~~~~~--~~~~~~~~~~-~~~~V 272 (365)
T 4h5i_A 204 TVTGSCIARKTD-FD-------KNWSLSKINFIADDTVLIAASLKKGKGIVLTKISIKSGNT--SVLRSKQVTN-RFKGI 272 (365)
T ss_dssp TTTCCEEEEECC-CC-------TTEEEEEEEEEETTEEEEEEEESSSCCEEEEEEEEETTEE--EEEEEEEEES-SCSCE
T ss_pred eccCcceeeeec-CC-------CCCCEEEEEEcCCCCEEEEEecCCcceeEEeeccccccee--cceeeeeecC-CCCCe
Confidence 44554322111 00 11235789999999 5555443332 456666654411 0112222221 23445
Q ss_pred CeEEEeCCCeEEEEe--CCceEEEEcCCCceEEEEEeeecCCCcccceEEEE-ECCeEEEEEecCcc
Q 020019 253 DGLELLSPTKLVVAG--NPSARLVESSDGWETAAVVAKFSGPVHRLATAATV-KDGRVYLNHMLGFG 316 (332)
Q Consensus 253 dGi~~~~dG~l~va~--~~~~~~v~~~dg~~~~~~~~~~~~~~~~~pt~va~-~~g~lyv~~~~g~~ 316 (332)
..+++.|||+++++. ...+++....++ +.+..+...--...++++| .++++.++.-....
T Consensus 273 ~~~~~Spdg~~lasgs~D~~V~iwd~~~~----~~~~~~~~gH~~~V~~v~fSpdg~~laS~S~D~t 335 (365)
T 4h5i_A 273 TSMDVDMKGELAVLASNDNSIALVKLKDL----SMSKIFKQAHSFAITEVTISPDSTYVASVSAANT 335 (365)
T ss_dssp EEEEECTTSCEEEEEETTSCEEEEETTTT----EEEEEETTSSSSCEEEEEECTTSCEEEEEETTSE
T ss_pred EeEEECCCCCceEEEcCCCEEEEEECCCC----cEEEEecCcccCCEEEEEECCCCCEEEEEeCCCe
Confidence 688999999988875 234555566666 3333322111223478999 77877775544433
|
| >1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.53 E-value=6.5e-05 Score=69.10 Aligned_cols=199 Identities=10% Similarity=0.075 Sum_probs=120.7
Q ss_pred cccceEEcCCCCEEEEEecCCeEEEEECCCCCCCccceeeeEEecccCcCCCccceEEEeCCCCeEEEEEeCcCCCccce
Q 020019 46 FRECAKWDDSGRRFIVSFLDGGIGQVAVPDDYPPGTVLEEVTLVKDLELTGNGSLGLVLDHPRNRLLVVAADVFGNKYSA 125 (332)
Q Consensus 46 ~pegia~d~~g~~~~~~~~~g~I~~vd~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~vd~~~g~l~v~~~~~~~~~~~~ 125 (332)
....++++++++++++...++.|..++.. ++. .. .+... ......+++.++...|+++.. .+.
T Consensus 110 ~v~~~~~s~~~~~l~~~~~dg~i~i~~~~-~~~----~~--~~~~~----~~~v~~~~~~~~~~~l~~~~~------d~~ 172 (425)
T 1r5m_A 110 QVTCLAWSHDGNSIVTGVENGELRLWNKT-GAL----LN--VLNFH----RAPIVSVKWNKDGTHIISMDV------ENV 172 (425)
T ss_dssp CEEEEEECTTSSEEEEEETTSCEEEEETT-SCE----EE--EECCC----CSCEEEEEECTTSSEEEEEET------TCC
T ss_pred ceEEEEEcCCCCEEEEEeCCCeEEEEeCC-CCe----ee--eccCC----CccEEEEEECCCCCEEEEEec------CCe
Confidence 45678999999988887778999999843 431 11 22211 125788999997334444443 356
Q ss_pred EEEEECCCCcEEEEEecCCCCC----------CCCCccceEECCCCcEEEEeCCCCeEEEEcCCC-ceEEEecCCCCCCc
Q 020019 126 VAAYDLSTWNRLFLTQLSGPSD----------GKSCADDVTVDAEGNAYVTDVTGSKIWKVGVKG-EFLSIISSPLFTPK 194 (332)
Q Consensus 126 l~~~d~~~g~~~~~~~l~~~~~----------~~~~~ndiavd~dG~lyvtd~~~~~I~~v~~~g-~~~~~~~~~~~~~p 194 (332)
+..||.++++............ .......+++.+++. +++-...+.|+.++... +....+..
T Consensus 173 i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~g~i~~~d~~~~~~~~~~~~------ 245 (425)
T 1r5m_A 173 TILWNVISGTVMQHFELKETGGSSINAENHSGDGSLGVDVEWVDDDK-FVIPGPKGAIFVYQITEKTPTGKLIG------ 245 (425)
T ss_dssp EEEEETTTTEEEEEECCC---------------CCCBSCCEEEETTE-EEEECGGGCEEEEETTCSSCSEEECC------
T ss_pred EEEEECCCCcEEEEeeccccCccceeeccccCCcceeeEEEEcCCCE-EEEEcCCCeEEEEEcCCCceeeeecc------
Confidence 8899999888766554421100 011267888888865 55555678888888663 32222211
Q ss_pred ccccCccccCeEEEccCceEEEEeCCCCeEEEEeCCCCCCccceeEEEEecCCCCCCCCeEEEeCCCeEEEEeCC-ceEE
Q 020019 195 EWYKNLVGLNGIVYHPDGFLIVIHTFSGNLFKIDIVDGVGEGEEIKLIRVAGGPLSFGDGLELLSPTKLVVAGNP-SARL 273 (332)
Q Consensus 195 ~~~~~~~~~nGi~~~~dG~Lyva~~~~~~i~~id~~~~~~~~~~~~~v~~~g~~~~~pdGi~~~~dG~l~va~~~-~~~~ 273 (332)
.......+++++++.++++-...+.|..+++.+++ .+..+.. .......+++.++|.++++... ..++
T Consensus 246 ----~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~----~~~~~~~---~~~~i~~~~~~~~~~l~~~~~d~~i~i 314 (425)
T 1r5m_A 246 ----HHGPISVLEFNDTNKLLLSASDDGTLRIWHGGNGN----SQNCFYG---HSQSIVSASWVGDDKVISCSMDGSVRL 314 (425)
T ss_dssp ----CSSCEEEEEEETTTTEEEEEETTSCEEEECSSSBS----CSEEECC---CSSCEEEEEEETTTEEEEEETTSEEEE
T ss_pred ----CCCceEEEEECCCCCEEEEEcCCCEEEEEECCCCc----cceEecC---CCccEEEEEECCCCEEEEEeCCCcEEE
Confidence 11235789999999444445567789889988652 3443332 2245678899999944444443 3344
Q ss_pred EEcCCC
Q 020019 274 VESSDG 279 (332)
Q Consensus 274 v~~~dg 279 (332)
.....+
T Consensus 315 ~d~~~~ 320 (425)
T 1r5m_A 315 WSLKQN 320 (425)
T ss_dssp EETTTT
T ss_pred EECCCC
Confidence 444555
|
| >1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C | Back alignment and structure |
|---|
Probab=98.53 E-value=3e-05 Score=70.36 Aligned_cols=192 Identities=12% Similarity=0.093 Sum_probs=121.7
Q ss_pred CccccceEEcCCCCEEEEEecCCeEEEEECCCCCCCccceeeeEEecccCcCCCccceEEEeCCCCeEEEEEeCcCCCcc
Q 020019 44 SFFRECAKWDDSGRRFIVSFLDGGIGQVAVPDDYPPGTVLEEVTLVKDLELTGNGSLGLVLDHPRNRLLVVAADVFGNKY 123 (332)
Q Consensus 44 ~~~pegia~d~~g~~~~~~~~~g~I~~vd~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~vd~~~g~l~v~~~~~~~~~~ 123 (332)
......++++++++.+++...++.|..++..+++. .. ... ... ....+..+.++++ ++.+++... .
T Consensus 52 ~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~----~~--~~~-~~~-~~~~v~~~~~~~~-~~~l~~~~~-----d 117 (372)
T 1k8k_C 52 NGQVTGVDWAPDSNRIVTCGTDRNAYVWTLKGRTW----KP--TLV-ILR-INRAARCVRWAPN-EKKFAVGSG-----S 117 (372)
T ss_dssp SSCEEEEEEETTTTEEEEEETTSCEEEEEEETTEE----EE--EEE-CCC-CSSCEEEEEECTT-SSEEEEEET-----T
T ss_pred CCcccEEEEeCCCCEEEEEcCCCeEEEEECCCCee----ee--eEE-eec-CCCceeEEEECCC-CCEEEEEeC-----C
Confidence 33556799999999888777789999888765541 11 111 011 1125788999997 554444332 3
Q ss_pred ceEEEEECCCCcEEEE-EecCCCCCCCCCccceEECCCCcEEEEeCCCCeEEEEcCC-------------------CceE
Q 020019 124 SAVAAYDLSTWNRLFL-TQLSGPSDGKSCADDVTVDAEGNAYVTDVTGSKIWKVGVK-------------------GEFL 183 (332)
Q Consensus 124 ~~l~~~d~~~g~~~~~-~~l~~~~~~~~~~ndiavd~dG~lyvtd~~~~~I~~v~~~-------------------g~~~ 183 (332)
+.+..||.++++.... ..+..+ .......+++.++|+.+++-...+.|..++.. ++..
T Consensus 118 ~~v~i~d~~~~~~~~~~~~~~~~--~~~~i~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~ 195 (372)
T 1k8k_C 118 RVISICYFEQENDWWVCKHIKKP--IRSTVLSLDWHPNSVLLAAGSCDFKCRIFSAYIKEVEERPAPTPWGSKMPFGELM 195 (372)
T ss_dssp SSEEEEEEETTTTEEEEEEECTT--CCSCEEEEEECTTSSEEEEEETTSCEEEEECCCTTTSCCCCCBTTBSCCCTTCEE
T ss_pred CEEEEEEecCCCcceeeeeeecc--cCCCeeEEEEcCCCCEEEEEcCCCCEEEEEcccccccccccccccccccchhhhe
Confidence 4678888877653221 122111 13567889999999888887778888888742 3322
Q ss_pred EEecCCCCCCcccccCccccCeEEEccCceEEEEeCCCCeEEEEeCCCCCCccceeEEEEecCCCCCCCCeEEEeCCCeE
Q 020019 184 SIISSPLFTPKEWYKNLVGLNGIVYHPDGFLIVIHTFSGNLFKIDIVDGVGEGEEIKLIRVAGGPLSFGDGLELLSPTKL 263 (332)
Q Consensus 184 ~~~~~~~~~~p~~~~~~~~~nGi~~~~dG~Lyva~~~~~~i~~id~~~~~~~~~~~~~v~~~g~~~~~pdGi~~~~dG~l 263 (332)
..+.. .....+.++++++|.++++-...+.|..++..+++ .+..+... ......+++.++|++
T Consensus 196 ~~~~~----------~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~----~~~~~~~~---~~~v~~~~~~~~~~~ 258 (372)
T 1k8k_C 196 FESSS----------SCGWVHGVCFSANGSRVAWVSHDSTVCLADADKKM----AVATLASE---TLPLLAVTFITESSL 258 (372)
T ss_dssp EECCC----------CSSCEEEEEECSSSSEEEEEETTTEEEEEEGGGTT----EEEEEECS---SCCEEEEEEEETTEE
T ss_pred EecCC----------CCCeEEEEEECCCCCEEEEEeCCCEEEEEECCCCc----eeEEEccC---CCCeEEEEEecCCCE
Confidence 22211 12346789999999444444567889999998762 45545432 234578999999998
Q ss_pred EEEeC
Q 020019 264 VVAGN 268 (332)
Q Consensus 264 ~va~~ 268 (332)
+++..
T Consensus 259 l~~~~ 263 (372)
T 1k8k_C 259 VAAGH 263 (372)
T ss_dssp EEEET
T ss_pred EEEEe
Confidence 88763
|
| >3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.52 E-value=2.1e-05 Score=71.70 Aligned_cols=190 Identities=14% Similarity=0.109 Sum_probs=117.5
Q ss_pred ccceEEcCCCCEEEEEecCCeEEEEECCCCCCCccceeeeEEecccCcCCCccceEEEeCCCCeEEEEEeCcCCCccceE
Q 020019 47 RECAKWDDSGRRFIVSFLDGGIGQVAVPDDYPPGTVLEEVTLVKDLELTGNGSLGLVLDHPRNRLLVVAADVFGNKYSAV 126 (332)
Q Consensus 47 pegia~d~~g~~~~~~~~~g~I~~vd~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~vd~~~g~l~v~~~~~~~~~~~~l 126 (332)
...++++|+|+++++...++.|..++..++.. ... .... .+ -......++++++ ++++++... .+.+
T Consensus 19 v~~l~~sp~g~~las~~~D~~i~iw~~~~~~~----~~~-~~~~-~~-h~~~v~~~~~sp~-g~~l~s~s~-----D~~v 85 (345)
T 3fm0_A 19 CWFLAWNPAGTLLASCGGDRRIRIWGTEGDSW----ICK-SVLS-EG-HQRTVRKVAWSPC-GNYLASASF-----DATT 85 (345)
T ss_dssp EEEEEECTTSSCEEEEETTSCEEEEEEETTEE----EEE-EEEC-SS-CSSCEEEEEECTT-SSEEEEEET-----TSCE
T ss_pred EEEEEECCCCCEEEEEcCCCeEEEEEcCCCcc----eee-eeec-cc-cCCcEEEEEECCC-CCEEEEEEC-----CCcE
Confidence 34789999999888877789888888765531 110 1111 11 0125788999997 664444332 3457
Q ss_pred EEEECCCCcEEEEEecCCCCCCCCCccceEECCCCcEEEEeCCCCeEEEEcCCC--ceE--EEecCCCCCCcccccCccc
Q 020019 127 AAYDLSTWNRLFLTQLSGPSDGKSCADDVTVDAEGNAYVTDVTGSKIWKVGVKG--EFL--SIISSPLFTPKEWYKNLVG 202 (332)
Q Consensus 127 ~~~d~~~g~~~~~~~l~~~~~~~~~~ndiavd~dG~lyvtd~~~~~I~~v~~~g--~~~--~~~~~~~~~~p~~~~~~~~ 202 (332)
..||.++++......+.+. ....+.+++.|+|+++++-+..+.|...+.+. ... ..+.. ....
T Consensus 86 ~iw~~~~~~~~~~~~~~~h---~~~v~~v~~sp~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~----------h~~~ 152 (345)
T 3fm0_A 86 CIWKKNQDDFECVTTLEGH---ENEVKSVAWAPSGNLLATCSRDKSVWVWEVDEEDEYECVSVLNS----------HTQD 152 (345)
T ss_dssp EEEEECCC-EEEEEEECCC---SSCEEEEEECTTSSEEEEEETTSCEEEEEECTTSCEEEEEEECC----------CCSC
T ss_pred EEEEccCCCeEEEEEccCC---CCCceEEEEeCCCCEEEEEECCCeEEEEECCCCCCeEEEEEecC----------cCCC
Confidence 7889877665444445321 24578899999999888888888777766542 211 11211 1123
Q ss_pred cCeEEEccCceEEEEeCCCCeEEEEeCCCCCCccceeEEEEecCCCCCCCCeEEEeCCCeEEEEe
Q 020019 203 LNGIVYHPDGFLIVIHTFSGNLFKIDIVDGVGEGEEIKLIRVAGGPLSFGDGLELLSPTKLVVAG 267 (332)
Q Consensus 203 ~nGi~~~~dG~Lyva~~~~~~i~~id~~~~~~~~~~~~~v~~~g~~~~~pdGi~~~~dG~l~va~ 267 (332)
...++++|+|.++++-...+.|..++...+. ......+.+ .......++++++|+++++.
T Consensus 153 v~~~~~~p~~~~l~s~s~d~~i~~w~~~~~~----~~~~~~~~~-h~~~v~~l~~sp~g~~l~s~ 212 (345)
T 3fm0_A 153 VKHVVWHPSQELLASASYDDTVKLYREEEDD----WVCCATLEG-HESTVWSLAFDPSGQRLASC 212 (345)
T ss_dssp EEEEEECSSSSCEEEEETTSCEEEEEEETTE----EEEEEEECC-CSSCEEEEEECTTSSEEEEE
T ss_pred eEEEEECCCCCEEEEEeCCCcEEEEEecCCC----EEEEEEecC-CCCceEEEEECCCCCEEEEE
Confidence 5689999999555555566777777766541 222223332 33456789999999877775
|
| >3amr_A 3-phytase; beta-propeller, phytate, MYO-inositol hexasulfate, hydrolase-hydrolase inhibitor complex; HET: IHS; 1.25A {Bacillus subtilis} PDB: 3ams_A* 2poo_A 1poo_A 1qlg_A 1h6l_A 1cvm_A | Back alignment and structure |
|---|
Probab=98.52 E-value=1.6e-05 Score=72.87 Aligned_cols=181 Identities=16% Similarity=0.217 Sum_probs=107.0
Q ss_pred ccceEEEEECCCCcEEEEEecCCCCCCCCCccceEECCC----C----cEEEEeCC--CCeEE--EEcCCCceEEEecCC
Q 020019 122 KYSAVAAYDLSTWNRLFLTQLSGPSDGKSCADDVTVDAE----G----NAYVTDVT--GSKIW--KVGVKGEFLSIISSP 189 (332)
Q Consensus 122 ~~~~l~~~d~~~g~~~~~~~l~~~~~~~~~~ndiavd~d----G----~lyvtd~~--~~~I~--~v~~~g~~~~~~~~~ 189 (332)
+.+.|++||+ .|+.+..+.. ..+|.+.+-++ | -+|+++.. .++|. .+|++.+.+..+...
T Consensus 48 k~~gL~Vydl-~G~~l~~~~~-------g~~nnVD~r~~~~l~g~~~dla~as~R~~~~n~l~vf~iDp~~~~l~~i~~~ 119 (355)
T 3amr_A 48 KKSGLVVYSL-DGKMLHSYNT-------GKLNNVDIRYDFPLNGKKVDIAAASNRSEGKNTIEIYAIDGKNGTLQSMTDP 119 (355)
T ss_dssp TTTEEEEEET-TSCEEEEECC-------SCEEEEEEEEEEEETTEEEEEEEEEECSTTCCEEEEEEECTTTCCEEECSCT
T ss_pred CCCCEEEEcC-CCcEEEEccC-------CCcccEEEecccccCCceEeEEEEeCCCCCCCeEEEEEECCCCCceeecccc
Confidence 3468999999 6787765421 35666666552 1 25889988 78664 457664433322211
Q ss_pred CCCCcccccCccccCeEEE--ccC-c--eEEEEeCCCCeEEEEeCC---CCCCccceeEEEEecCCCCCCCCeEEEeCC-
Q 020019 190 LFTPKEWYKNLVGLNGIVY--HPD-G--FLIVIHTFSGNLFKIDIV---DGVGEGEEIKLIRVAGGPLSFGDGLELLSP- 260 (332)
Q Consensus 190 ~~~~p~~~~~~~~~nGi~~--~~d-G--~Lyva~~~~~~i~~id~~---~~~~~~~~~~~v~~~g~~~~~pdGi~~~~d- 260 (332)
. .|. ......|.|||+ +++ | ++||++.. +++..+++. .++...+.++.+.++ +.|.|+++|+.
T Consensus 120 ~--~pv-~t~~~~pyGlcly~~~~~g~~yafV~~k~-G~~~q~~l~~~~~g~~~~~lVR~f~lg----sq~EgcvvDd~~ 191 (355)
T 3amr_A 120 D--HPI-ATAINEVYGFTLYHSQKTGKYYAMVTGKE-GEFEQYELKADKNGYISGKKVRAFKMN----SQTEGMAADDEY 191 (355)
T ss_dssp T--SCE-ECCCSSCCCEEEEECTTTCCEEEEEECSS-SEEEEEEEEECTTSCEEEEEEEEEECS----SCEEEEEEETTT
T ss_pred c--cCc-CCCCCCeeEEEEEecCCCCcEEEEEECCC-CeEEEEEEEeCCCCcccceEEEEecCC----CCcceEEEcCCC
Confidence 0 010 012367899999 764 4 58887765 788776653 333333356666655 46889999975
Q ss_pred CeEEEEeC-CceEEEEcC-CCceEEEEEeeecCCCcc-cceEEEE-EC----CeEEEEEecCcccc
Q 020019 261 TKLVVAGN-PSARLVESS-DGWETAAVVAKFSGPVHR-LATAATV-KD----GRVYLNHMLGFGYP 318 (332)
Q Consensus 261 G~l~va~~-~~~~~v~~~-dg~~~~~~~~~~~~~~~~-~pt~va~-~~----g~lyv~~~~g~~~~ 318 (332)
|.||+++. ..+|.+... ++-.+.+++..+..+.+. -+.++++ .. +.|++++.-...+.
T Consensus 192 g~Lyv~eEd~GIw~~da~p~~~~~~~~v~~~~~g~l~aDvEGLai~~~~~g~gyLivSsQG~~s~~ 257 (355)
T 3amr_A 192 GRLYIAEEDEAIWKFSAEPDGGSNGTVIDRADGRHLTRDIEGLTIYYAADGKGYLMASSQGNSSYA 257 (355)
T ss_dssp TEEEEEETTTEEEEEECSTTSCSCCEEEEEBSSSSBCSCEEEEEEEECGGGCEEEEEEEGGGTEEE
T ss_pred CeEEEecccceEEEEeCCcCCCCCceEEEEecCCccccCcceEEEEecCCCCEEEEEEcCCCCEEE
Confidence 99999975 445654422 211233555544433343 5788988 33 46777765544433
|
| >3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.51 E-value=0.00012 Score=66.22 Aligned_cols=191 Identities=13% Similarity=0.079 Sum_probs=117.4
Q ss_pred cccceEEcCCCCEEEEEecCCeEEEEECCCCCCCccceeeeEEecccCcCCCccceEEEeCC--CCeEEEEEeCcCCCcc
Q 020019 46 FRECAKWDDSGRRFIVSFLDGGIGQVAVPDDYPPGTVLEEVTLVKDLELTGNGSLGLVLDHP--RNRLLVVAADVFGNKY 123 (332)
Q Consensus 46 ~pegia~d~~g~~~~~~~~~g~I~~vd~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~vd~~--~g~l~v~~~~~~~~~~ 123 (332)
....++++++++.+++...++.|..++..+... +....+. + -......+++.++ ...|+.+.. .
T Consensus 13 ~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~-----~~~~~~~--~-h~~~v~~~~~~~~~~~~~l~s~~~------d 78 (379)
T 3jrp_A 13 LIHDAVLDYYGKRLATCSSDKTIKIFEVEGETH-----KLIDTLT--G-HEGPVWRVDWAHPKFGTILASCSY------D 78 (379)
T ss_dssp CEEEEEECSSSSEEEEEETTSCEEEEEEETTEE-----EEEEEEC--C-CSSCEEEEEECCGGGCSEEEEEET------T
T ss_pred cEEEEEEcCCCCEEEEEECCCcEEEEecCCCcc-----eeeeEec--C-CCCcEEEEEeCCCCCCCEEEEecc------C
Confidence 456789999999888777789888888753321 1001111 1 0125678888753 234444443 3
Q ss_pred ceEEEEECCCCcEEEEEecCCCCCCCCCccceEECCC--CcEEEEeCCCCeEEEEcCCCc---eEEEecCCCCCCccccc
Q 020019 124 SAVAAYDLSTWNRLFLTQLSGPSDGKSCADDVTVDAE--GNAYVTDVTGSKIWKVGVKGE---FLSIISSPLFTPKEWYK 198 (332)
Q Consensus 124 ~~l~~~d~~~g~~~~~~~l~~~~~~~~~~ndiavd~d--G~lyvtd~~~~~I~~v~~~g~---~~~~~~~~~~~~p~~~~ 198 (332)
+.|..||.++++......+.. .......+++.++ |+++++-+..+.|..++.... .......
T Consensus 79 g~v~iwd~~~~~~~~~~~~~~---~~~~v~~~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~---------- 145 (379)
T 3jrp_A 79 GKVLIWKEENGRWSQIAVHAV---HSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGTTSPIIIDA---------- 145 (379)
T ss_dssp SCEEEEEEETTEEEEEEEECC---CSSCEEEEEECCGGGCSEEEEEETTSEEEEEECCTTSCCCEEEEEC----------
T ss_pred CEEEEEEcCCCceeEeeeecC---CCcceEEEEeCCCCCCCEEEEecCCCcEEEEecCCCCceeeEEecC----------
Confidence 568899998887444444421 1356788999999 888888788888888886532 1111111
Q ss_pred CccccCeEEEcc-------------CceEEEEeCCCCeEEEEeCCCCCCccceeEEE-EecCCCCCCCCeEEEeCC---C
Q 020019 199 NLVGLNGIVYHP-------------DGFLIVIHTFSGNLFKIDIVDGVGEGEEIKLI-RVAGGPLSFGDGLELLSP---T 261 (332)
Q Consensus 199 ~~~~~nGi~~~~-------------dG~Lyva~~~~~~i~~id~~~~~~~~~~~~~v-~~~g~~~~~pdGi~~~~d---G 261 (332)
.......++++| ++.++++-...+.|..+++.++.. ....+ ... ........+++.++ +
T Consensus 146 ~~~~v~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~---~~~~~~~~~-~h~~~v~~~~~sp~~~~~ 221 (379)
T 3jrp_A 146 HAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQ---TYVLESTLE-GHSDWVRDVAWSPTVLLR 221 (379)
T ss_dssp CTTCEEEEEECCCC----------CTTCEEEEEETTSCEEEEEEETTTT---EEEEEEEEC-CCSSCEEEEEECCCCSSS
T ss_pred CCCceEEEEEcCccccccccccCCCCCCEEEEEeCCCeEEEEEecCCCc---ceeeEEEEe-cccCcEeEEEECCCCCCC
Confidence 112356888998 675555556677888888775521 11111 222 12245678999998 7
Q ss_pred eEEEEe
Q 020019 262 KLVVAG 267 (332)
Q Consensus 262 ~l~va~ 267 (332)
+++++.
T Consensus 222 ~~l~s~ 227 (379)
T 3jrp_A 222 SYLASV 227 (379)
T ss_dssp EEEEEE
T ss_pred CeEEEE
Confidence 877775
|
| >4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B* | Back alignment and structure |
|---|
Probab=98.50 E-value=1e-05 Score=76.32 Aligned_cols=204 Identities=10% Similarity=0.054 Sum_probs=124.3
Q ss_pred cccceEEcCC-CCEEEEEecCCeEEEEECCCCCCCccceeeeEEecccCcCCCccceEEEeCCCCeEEEEEeCcCCCccc
Q 020019 46 FRECAKWDDS-GRRFIVSFLDGGIGQVAVPDDYPPGTVLEEVTLVKDLELTGNGSLGLVLDHPRNRLLVVAADVFGNKYS 124 (332)
Q Consensus 46 ~pegia~d~~-g~~~~~~~~~g~I~~vd~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~vd~~~g~l~v~~~~~~~~~~~ 124 (332)
....++|+|. ++++.+...+|.|..++..+++. . ......+ -.....+|++.|.++.++++... .+
T Consensus 121 ~V~~l~~~P~~~~~lasGs~dg~i~lWd~~~~~~-----~--~~~~~~g-H~~~V~~l~f~p~~~~~l~s~s~-----D~ 187 (435)
T 4e54_B 121 RATSLAWHPTHPSTVAVGSKGGDIMLWNFGIKDK-----P--TFIKGIG-AGGSITGLKFNPLNTNQFYASSM-----EG 187 (435)
T ss_dssp CEEEEEECSSCTTCEEEEETTSCEEEECSSCCSC-----C--EEECCCS-SSCCCCEEEECSSCTTEEEEECS-----SS
T ss_pred CEEEEEEeCCCCCEEEEEeCCCEEEEEECCCCCc-----e--eEEEccC-CCCCEEEEEEeCCCCCEEEEEeC-----CC
Confidence 4567999984 56776667789999999876652 1 2221111 01257899999754554444332 35
Q ss_pred eEEEEECCCCcEEEEEecCCCCCCCCCccceEECCCCcEEEEeCCCCeEEEEcCCCceEEEecCCCCCCcccccCccccC
Q 020019 125 AVAAYDLSTWNRLFLTQLSGPSDGKSCADDVTVDAEGNAYVTDVTGSKIWKVGVKGEFLSIISSPLFTPKEWYKNLVGLN 204 (332)
Q Consensus 125 ~l~~~d~~~g~~~~~~~l~~~~~~~~~~ndiavd~dG~lyvtd~~~~~I~~v~~~g~~~~~~~~~~~~~p~~~~~~~~~n 204 (332)
.|..||.+++........ .........++++++|+++++-...+.|..++.+++....+.. .....+
T Consensus 188 ~v~iwd~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~l~~g~~dg~i~~wd~~~~~~~~~~~----------h~~~v~ 254 (435)
T 4e54_B 188 TTRLQDFKGNILRVFASS---DTINIWFCSLDVSASSRMVVTGDNVGNVILLNMDGKELWNLRM----------HKKKVT 254 (435)
T ss_dssp CEEEEETTSCEEEEEECC---SSCSCCCCCEEEETTTTEEEEECSSSBEEEEESSSCBCCCSBC----------CSSCEE
T ss_pred EEEEeeccCCceeEEecc---CCCCccEEEEEECCCCCEEEEEeCCCcEeeeccCcceeEEEec----------ccceEE
Confidence 688999987654433222 1112345679999999988888888999999988764321110 122457
Q ss_pred eEEEccCc-eEEEEeCCCCeEEEEeCCCCCCccceeEEEEecCCCCCCCCeEEEeCCCeEEEEeC--CceEEEEcCCC
Q 020019 205 GIVYHPDG-FLIVIHTFSGNLFKIDIVDGVGEGEEIKLIRVAGGPLSFGDGLELLSPTKLVVAGN--PSARLVESSDG 279 (332)
Q Consensus 205 Gi~~~~dG-~Lyva~~~~~~i~~id~~~~~~~~~~~~~v~~~g~~~~~pdGi~~~~dG~l~va~~--~~~~~v~~~dg 279 (332)
.|+|+|++ .++++-...+.|..+|+...+. ........ ........+++.++|+.+++.. +.+++....++
T Consensus 255 ~v~~~p~~~~~~~s~s~d~~v~iwd~~~~~~---~~~~~~~~-~h~~~v~~~~~spdg~~l~s~~~D~~i~iwd~~~~ 328 (435)
T 4e54_B 255 HVALNPCCDWFLATASVDQTVKIWDLRQVRG---KASFLYSL-PHRHPVNAACFSPDGARLLTTDQKSEIRVYSASQW 328 (435)
T ss_dssp EEEECTTCSSEEEEEETTSBCCEEETTTCCS---SSCCSBCC-BCSSCEEECCBCTTSSEEEEEESSSCEEEEESSSS
T ss_pred eeeecCCCceEEEEecCcceeeEEecccccc---cceEEEee-eccccccceeECCCCCeeEEEcCCCEEEEEECCCC
Confidence 89999998 6777767777787788875421 11111111 1122345677888887777642 33343344444
|
| >2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.49 E-value=4.5e-05 Score=72.08 Aligned_cols=230 Identities=9% Similarity=0.024 Sum_probs=135.4
Q ss_pred cccceEEcCCCCEE-EEEecCCeEEEEECC--CCCCCccceeeeEEecccCcCCCccceEEEeCCCCeEEEEEeCcCCCc
Q 020019 46 FRECAKWDDSGRRF-IVSFLDGGIGQVAVP--DDYPPGTVLEEVTLVKDLELTGNGSLGLVLDHPRNRLLVVAADVFGNK 122 (332)
Q Consensus 46 ~pegia~d~~g~~~-~~~~~~g~I~~vd~~--~~~~~~~~~~~~~~~~~~~~~~~~~~gi~vd~~~g~l~v~~~~~~~~~ 122 (332)
...+++++++|+.+ ++...++.|..++.. +++. .. .+... . ....+..++++++...|+++..
T Consensus 104 ~v~~~~~s~d~~~l~~~~~~dg~v~iwd~~~~~~~~----~~--~~~~~-~-~~~~v~~~~~sp~~~~l~~~~~------ 169 (450)
T 2vdu_B 104 YIRNLRLTSDESRLIACADSDKSLLVFDVDKTSKNV----LK--LRKRF-C-FSKRPNAISIAEDDTTVIIADK------ 169 (450)
T ss_dssp CEEEEEECTTSSEEEEEEGGGTEEEEEEECSSSSSC----EE--EEEEE-E-CSSCEEEEEECTTSSEEEEEET------
T ss_pred ceEEEEEcCCCCEEEEEECCCCeEEEEECcCCCCce----ee--eeecc-c-CCCCceEEEEcCCCCEEEEEeC------
Confidence 35679999999986 555678988888876 5552 12 22110 1 1125789999997334444443
Q ss_pred cceEEEEECCCCcEEE--EEecCCCCCCCCCccceEECCC---CcEEEEeCCCCeEEEEcCC-CceEEE-ecCCCCCCcc
Q 020019 123 YSAVAAYDLSTWNRLF--LTQLSGPSDGKSCADDVTVDAE---GNAYVTDVTGSKIWKVGVK-GEFLSI-ISSPLFTPKE 195 (332)
Q Consensus 123 ~~~l~~~d~~~g~~~~--~~~l~~~~~~~~~~ndiavd~d---G~lyvtd~~~~~I~~v~~~-g~~~~~-~~~~~~~~p~ 195 (332)
.+.++.|+..+++... ...+.+ .....+.+++.|+ |+++++-+..+.|..++.. ++.... ...
T Consensus 170 ~g~v~~~~~~~~~~~~~~~~~~~~---h~~~v~~~~~sp~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~------- 239 (450)
T 2vdu_B 170 FGDVYSIDINSIPEEKFTQEPILG---HVSMLTDVHLIKDSDGHQFIITSDRDEHIKISHYPQCFIVDKWLFG------- 239 (450)
T ss_dssp TSEEEEEETTSCCCSSCCCCCSEE---CSSCEEEEEEEECTTSCEEEEEEETTSCEEEEEESCTTCEEEECCC-------
T ss_pred CCcEEEEecCCcccccccceeeec---ccCceEEEEEcCCCCCCcEEEEEcCCCcEEEEECCCCceeeeeecC-------
Confidence 3568899987765421 001111 1245778999999 8877777777888877754 443322 211
Q ss_pred cccCccccCeEEEccCceEEEEeCCCCeEEEEeCCCCCCccceeEEEEecC----------------------CCCCCCC
Q 020019 196 WYKNLVGLNGIVYHPDGFLIVIHTFSGNLFKIDIVDGVGEGEEIKLIRVAG----------------------GPLSFGD 253 (332)
Q Consensus 196 ~~~~~~~~nGi~~~~dG~Lyva~~~~~~i~~id~~~~~~~~~~~~~v~~~g----------------------~~~~~pd 253 (332)
.......++|+ ||.++++-...++|..+++.+++ .+..+.... ..-....
T Consensus 240 ---h~~~v~~~~~s-d~~~l~s~~~d~~v~vwd~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 311 (450)
T 2vdu_B 240 ---HKHFVSSICCG-KDYLLLSAGGDDKIFAWDWKTGK----NLSTFDYNSLIKPYLNDQHLAPPRFQNENNDIIEFAVS 311 (450)
T ss_dssp ---CSSCEEEEEEC-STTEEEEEESSSEEEEEETTTCC----EEEEEECHHHHGGGCCTTSBC----------CBCCCEE
T ss_pred ---CCCceEEEEEC-CCCEEEEEeCCCeEEEEECCCCc----EeeeecchhhhhhhhhhcccccccccccccccceEEEE
Confidence 11345789999 98444455577889999998773 344444210 0012345
Q ss_pred eEEEeCCCeEEEE-e-CCc-eEEEEc--CCCceEEEEEeeecCCCcccceEEEEECCeEEEE
Q 020019 254 GLELLSPTKLVVA-G-NPS-ARLVES--SDGWETAAVVAKFSGPVHRLATAATVKDGRVYLN 310 (332)
Q Consensus 254 Gi~~~~dG~l~va-~-~~~-~~~v~~--~dg~~~~~~~~~~~~~~~~~pt~va~~~g~lyv~ 310 (332)
++++.++|+++++ . ... ..+... ..++.. +....+... ..+.++++..+.+|++
T Consensus 312 ~i~~~~~~~~l~~~~~~d~~i~iw~~~~~~~~~l-~~~~~~~~~--~~v~~~~~~~~~~~v~ 370 (450)
T 2vdu_B 312 KIIKSKNLPFVAFFVEATKCIIILEMSEKQKGDL-ALKQIITFP--YNVISLSAHNDEFQVT 370 (450)
T ss_dssp EEEECSSSSEEEEEETTCSEEEEEEECSSSTTCE-EEEEEEECS--SCEEEEEEETTEEEEE
T ss_pred EEEEeCCCCEEEEEECCCCeEEEEEeccCCCCce-eeccEeccC--CceEEEEecCCcEEEE
Confidence 7888888775555 3 222 333333 333222 333444332 4567888866777774
|
| >3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A | Back alignment and structure |
|---|
Probab=98.48 E-value=9.2e-05 Score=68.53 Aligned_cols=192 Identities=15% Similarity=0.063 Sum_probs=122.2
Q ss_pred cccceEEcCCCCEEEEEecCCeEEEEECCCCCCCccceeeeEEecccCcCCCccceEEEeCCCCeEEEEEeCcCCCccce
Q 020019 46 FRECAKWDDSGRRFIVSFLDGGIGQVAVPDDYPPGTVLEEVTLVKDLELTGNGSLGLVLDHPRNRLLVVAADVFGNKYSA 125 (332)
Q Consensus 46 ~pegia~d~~g~~~~~~~~~g~I~~vd~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~vd~~~g~l~v~~~~~~~~~~~~ 125 (332)
....++++++++.+++...++.|..++..+++. .. .+.... .....++++++ ++++++... .+.
T Consensus 141 ~v~~~~~~~~~~~l~s~s~d~~i~iwd~~~~~~----~~--~~~~h~----~~v~~~~~~~~-~~~l~s~~~-----d~~ 204 (420)
T 3vl1_A 141 EITKLKFFPSGEALISSSQDMQLKIWSVKDGSN----PR--TLIGHR----ATVTDIAIIDR-GRNVLSASL-----DGT 204 (420)
T ss_dssp CEEEEEECTTSSEEEEEETTSEEEEEETTTCCC----CE--EEECCS----SCEEEEEEETT-TTEEEEEET-----TSC
T ss_pred ccEEEEECCCCCEEEEEeCCCeEEEEeCCCCcC----ce--EEcCCC----CcEEEEEEcCC-CCEEEEEcC-----CCc
Confidence 556789999999888777789999999887653 11 232111 25788999997 554444332 356
Q ss_pred EEEEECCCCcEEEEEecCC-CCC------------------CCCCccceEECCCCcEEEEeCCCCeEEEEcCC-CceEEE
Q 020019 126 VAAYDLSTWNRLFLTQLSG-PSD------------------GKSCADDVTVDAEGNAYVTDVTGSKIWKVGVK-GEFLSI 185 (332)
Q Consensus 126 l~~~d~~~g~~~~~~~l~~-~~~------------------~~~~~ndiavd~dG~lyvtd~~~~~I~~v~~~-g~~~~~ 185 (332)
+..||.++++......... +.. .......++++++|+.+++-...+.|..+|.. ++....
T Consensus 205 v~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~ 284 (420)
T 3vl1_A 205 IRLWECGTGTTIHTFNRKENPHDGVNSIALFVGTDRQLHEISTSKKNNLEFGTYGKYVIAGHVSGVITVHNVFSKEQTIQ 284 (420)
T ss_dssp EEEEETTTTEEEEEECBTTBTTCCEEEEEEEECCCSSCGGGCCCCCCTTCSSCTTEEEEEEETTSCEEEEETTTCCEEEE
T ss_pred EEEeECCCCceeEEeecCCCCCCCccEEEEecCCcceeeecccCcccceEEcCCCCEEEEEcCCCeEEEEECCCCceeEE
Confidence 8899999887766554311 000 01345567788999887877778888888875 333322
Q ss_pred ecCCCCCCcccccCccccCeEEEccCce-EEEEeCCCCeEEEEeCCCCCCccceeEEEEecCCCCCCCCeEEEeCCCeEE
Q 020019 186 ISSPLFTPKEWYKNLVGLNGIVYHPDGF-LIVIHTFSGNLFKIDIVDGVGEGEEIKLIRVAGGPLSFGDGLELLSPTKLV 264 (332)
Q Consensus 186 ~~~~~~~~p~~~~~~~~~nGi~~~~dG~-Lyva~~~~~~i~~id~~~~~~~~~~~~~v~~~g~~~~~pdGi~~~~dG~l~ 264 (332)
.... .......++++|+|. ++++-...+.|..+++.+++. .+..+... .-.....+.. ++|+++
T Consensus 285 ~~~~---------~~~~v~~~~~~~~~~~~l~~g~~dg~i~vwd~~~~~~---~~~~~~~~--~~~~v~~~~~-~~~~~l 349 (420)
T 3vl1_A 285 LPSK---------FTCSCNSLTVDGNNANYIYAGYENGMLAQWDLRSPEC---PVGEFLIN--EGTPINNVYF-AAGALF 349 (420)
T ss_dssp ECCT---------TSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCTTS---CSEEEEES--TTSCEEEEEE-ETTEEE
T ss_pred cccc---------cCCCceeEEEeCCCCCEEEEEeCCCeEEEEEcCCCcC---chhhhhcc--CCCCceEEEe-CCCCEE
Confidence 2111 113467899999994 777777889999999987631 34444432 1123344544 466666
Q ss_pred EEeC
Q 020019 265 VAGN 268 (332)
Q Consensus 265 va~~ 268 (332)
++..
T Consensus 350 ~s~~ 353 (420)
T 3vl1_A 350 VSSG 353 (420)
T ss_dssp EEET
T ss_pred EEec
Confidence 6653
|
| >3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A | Back alignment and structure |
|---|
Probab=98.47 E-value=0.0001 Score=74.42 Aligned_cols=199 Identities=9% Similarity=-0.013 Sum_probs=128.2
Q ss_pred CCccccceEEcCCCCEEEEEecCCeEEEEECCCCCCCccceeeeEEecccCcCCCccceEEEeCCCCe-EEEEEeCcCCC
Q 020019 43 SSFFRECAKWDDSGRRFIVSFLDGGIGQVAVPDDYPPGTVLEEVTLVKDLELTGNGSLGLVLDHPRNR-LLVVAADVFGN 121 (332)
Q Consensus 43 ~~~~pegia~d~~g~~~~~~~~~g~I~~vd~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~vd~~~g~-l~v~~~~~~~~ 121 (332)
......+++|+++|+.+++...+|.|..++..+++. .. .+.... .....++++++ +. |.++..
T Consensus 54 ~~~~v~~~~~s~~~~~l~~~~~dg~i~vw~~~~~~~----~~--~~~~~~----~~v~~~~~s~~-~~~l~~~~~----- 117 (814)
T 3mkq_A 54 TETPVRAGKFIARKNWIIVGSDDFRIRVFNYNTGEK----VV--DFEAHP----DYIRSIAVHPT-KPYVLSGSD----- 117 (814)
T ss_dssp CSSCEEEEEEEGGGTEEEEEETTSEEEEEETTTCCE----EE--EEECCS----SCEEEEEECSS-SSEEEEEET-----
T ss_pred CCCcEEEEEEeCCCCEEEEEeCCCeEEEEECCCCcE----EE--EEecCC----CCEEEEEEeCC-CCEEEEEcC-----
Confidence 333557899999999888877789999999877652 11 222111 25788999997 55 444433
Q ss_pred ccceEEEEECCCCc-EEEEEecCCCCCCCCCccceEECC-CCcEEEEeCCCCeEEEEcCC-CceEEEecCCCCCCccccc
Q 020019 122 KYSAVAAYDLSTWN-RLFLTQLSGPSDGKSCADDVTVDA-EGNAYVTDVTGSKIWKVGVK-GEFLSIISSPLFTPKEWYK 198 (332)
Q Consensus 122 ~~~~l~~~d~~~g~-~~~~~~l~~~~~~~~~~ndiavd~-dG~lyvtd~~~~~I~~v~~~-g~~~~~~~~~~~~~p~~~~ 198 (332)
.+.+..||.+++. ......- .......+++.| +|+.+++-+..+.|..++.. ++........
T Consensus 118 -dg~i~vw~~~~~~~~~~~~~~-----~~~~v~~~~~~p~~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~~--------- 182 (814)
T 3mkq_A 118 -DLTVKLWNWENNWALEQTFEG-----HEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNFTLTTG--------- 182 (814)
T ss_dssp -TSEEEEEEGGGTSEEEEEEEC-----CSSCEEEEEEETTEEEEEEEEETTSEEEEEETTCSSCSEEEECC---------
T ss_pred -CCEEEEEECCCCceEEEEEcC-----CCCcEEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcceeEEecC---------
Confidence 3578899998763 3322221 124567899999 78888888888888888865 3322211111
Q ss_pred CccccCeEEEcc--CceEEEEeCCCCeEEEEeCCCCCCccceeEEEEecCCCCCCCCeEEEeCCCeEEEEeC--CceEEE
Q 020019 199 NLVGLNGIVYHP--DGFLIVIHTFSGNLFKIDIVDGVGEGEEIKLIRVAGGPLSFGDGLELLSPTKLVVAGN--PSARLV 274 (332)
Q Consensus 199 ~~~~~nGi~~~~--dG~Lyva~~~~~~i~~id~~~~~~~~~~~~~v~~~g~~~~~pdGi~~~~dG~l~va~~--~~~~~v 274 (332)
.....+.+++++ +|.++++-...++|..++..++ ..+..+.. .......+++.++|.++++.. +..++.
T Consensus 183 ~~~~v~~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~----~~~~~~~~---~~~~v~~~~~~~~~~~l~~~~~dg~v~vw 255 (814)
T 3mkq_A 183 QERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTK----SCVATLEG---HMSNVSFAVFHPTLPIIISGSEDGTLKIW 255 (814)
T ss_dssp CTTCCCEEEECCSTTCCEEEEECTTSEEEEEETTTT----EEEEEEEC---CSSCEEEEEECSSSSEEEEEETTSCEEEE
T ss_pred CCCCEEEEEEEECCCCCEEEEEeCCCEEEEEECCCC----cEEEEEcC---CCCCEEEEEEcCCCCEEEEEeCCCeEEEE
Confidence 113467899998 8855666667889999998876 23443432 224566889999988766652 334444
Q ss_pred EcCCC
Q 020019 275 ESSDG 279 (332)
Q Consensus 275 ~~~dg 279 (332)
....+
T Consensus 256 d~~~~ 260 (814)
T 3mkq_A 256 NSSTY 260 (814)
T ss_dssp ETTTC
T ss_pred ECCCC
Confidence 44545
|
| >1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A | Back alignment and structure |
|---|
Probab=98.47 E-value=7.5e-05 Score=72.56 Aligned_cols=196 Identities=11% Similarity=0.050 Sum_probs=122.8
Q ss_pred cccceEEcCCCCEEEEEecCCeEEEEECCCC----CCCccceeeeEEecccCcCCCc-cceEEEeC--CCCeEEEEEeCc
Q 020019 46 FRECAKWDDSGRRFIVSFLDGGIGQVAVPDD----YPPGTVLEEVTLVKDLELTGNG-SLGLVLDH--PRNRLLVVAADV 118 (332)
Q Consensus 46 ~pegia~d~~g~~~~~~~~~g~I~~vd~~~~----~~~~~~~~~~~~~~~~~~~~~~-~~gi~vd~--~~g~l~v~~~~~ 118 (332)
.+..++++++|+++++.. ++.|..++..++ +. .. .+.... .. +..+++++ + ++++++...
T Consensus 20 ~v~~~~~spdg~~l~~~~-~~~v~v~~~~~~~~~~~~----~~--~~~~h~----~~~v~~~~~sp~~~-~~~l~s~~~- 86 (615)
T 1pgu_A 20 FTTHLSYDPTTNAIAYPC-GKSAFVRCLDDGDSKVPP----VV--QFTGHG----SSVVTTVKFSPIKG-SQYLCSGDE- 86 (615)
T ss_dssp CCCCCEEETTTTEEEEEE-TTEEEEEECCSSCCSSCS----EE--EECTTT----TSCEEEEEECSSTT-CCEEEEEET-
T ss_pred ceeEEEECCCCCEEEEec-CCeEEEEECCCCCCcccc----ce--EEecCC----CceEEEEEECcCCC-CCEEEEecC-
Confidence 567899999999776655 688999998766 31 11 232111 25 78999999 8 554444332
Q ss_pred CCCccceEEEEECCCC------cEEEEEecCCCCCCCCCccceEECCCCcEEEEeCCC----CeEEEEcCCCceEEEecC
Q 020019 119 FGNKYSAVAAYDLSTW------NRLFLTQLSGPSDGKSCADDVTVDAEGNAYVTDVTG----SKIWKVGVKGEFLSIISS 188 (332)
Q Consensus 119 ~~~~~~~l~~~d~~~g------~~~~~~~l~~~~~~~~~~ndiavd~dG~lyvtd~~~----~~I~~v~~~g~~~~~~~~ 188 (332)
.+.+.+||.+++ +......+.. .......+++.|+|+.+++-... +.|+.++. ++....+..
T Consensus 87 ----dg~v~vw~~~~~~~~~~~~~~~~~~~~~---~~~~v~~~~~s~~~~~l~~~~~~~~~~~~v~~~d~-~~~~~~~~~ 158 (615)
T 1pgu_A 87 ----SGKVIVWGWTFDKESNSVEVNVKSEFQV---LAGPISDISWDFEGRRLCVVGEGRDNFGVFISWDS-GNSLGEVSG 158 (615)
T ss_dssp ----TSEEEEEEEEEEGGGTEEEEEEEEEEEC---CSSCEEEEEECTTSSEEEEEECCSSCSEEEEETTT-CCEEEECCS
T ss_pred ----CCEEEEEeCCCCcccccccccccchhhc---ccccEEEEEEeCCCCEEEEeccCCCCccEEEEEEC-CCcceeeec
Confidence 356889998755 3333333321 13467889999999865554433 67888873 343332211
Q ss_pred CCCCCcccccCccccCeEEEccCc-eEEEEeCCCCeEEEEeCCCCCCccceeEEEEecCCCCC---CCCeEEEeCC-CeE
Q 020019 189 PLFTPKEWYKNLVGLNGIVYHPDG-FLIVIHTFSGNLFKIDIVDGVGEGEEIKLIRVAGGPLS---FGDGLELLSP-TKL 263 (332)
Q Consensus 189 ~~~~~p~~~~~~~~~nGi~~~~dG-~Lyva~~~~~~i~~id~~~~~~~~~~~~~v~~~g~~~~---~pdGi~~~~d-G~l 263 (332)
.......++|+|++ .++++-...+.|..++..++ +.+..+.. ... ....+++.++ |++
T Consensus 159 ----------~~~~v~~~~~~~~~~~~l~~~~~d~~v~vwd~~~~----~~~~~~~~---~~~~~~~v~~~~~~~~~~~~ 221 (615)
T 1pgu_A 159 ----------HSQRINACHLKQSRPMRSMTVGDDGSVVFYQGPPF----KFSASDRT---HHKQGSFVRDVEFSPDSGEF 221 (615)
T ss_dssp ----------CSSCEEEEEECSSSSCEEEEEETTTEEEEEETTTB----EEEEEECS---SSCTTCCEEEEEECSTTCCE
T ss_pred ----------CCccEEEEEECCCCCcEEEEEeCCCcEEEEeCCCc----ceeeeecc---cCCCCceEEEEEECCCCCCE
Confidence 11346789999999 47777777889999998765 23333332 222 4568899999 887
Q ss_pred EEEe--CCceEEEEcCCC
Q 020019 264 VVAG--NPSARLVESSDG 279 (332)
Q Consensus 264 ~va~--~~~~~~v~~~dg 279 (332)
+++. ....++....++
T Consensus 222 l~~~~~dg~i~vwd~~~~ 239 (615)
T 1pgu_A 222 VITVGSDRKISCFDGKSG 239 (615)
T ss_dssp EEEEETTCCEEEEETTTC
T ss_pred EEEEeCCCeEEEEECCCC
Confidence 7764 333444455666
|
| >3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A* | Back alignment and structure |
|---|
Probab=98.47 E-value=0.00027 Score=75.09 Aligned_cols=231 Identities=13% Similarity=0.043 Sum_probs=140.2
Q ss_pred cccceEEcCCCCEEEEEecCCeEEEEECCCCCCCccceeeeEEecccCcCCCccceEEEeCCC-CeEEEEEeCcCCCccc
Q 020019 46 FRECAKWDDSGRRFIVSFLDGGIGQVAVPDDYPPGTVLEEVTLVKDLELTGNGSLGLVLDHPR-NRLLVVAADVFGNKYS 124 (332)
Q Consensus 46 ~pegia~d~~g~~~~~~~~~g~I~~vd~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~vd~~~-g~l~v~~~~~~~~~~~ 124 (332)
....++++++|+.+++...++.|..++..+++. .. .+... ......+++.++. +.++++.. ..+
T Consensus 659 ~v~~~~~s~~~~~l~s~~~d~~v~vwd~~~~~~----~~--~~~~~----~~~v~~~~~~~~~~~~~l~sg~-----~d~ 723 (1249)
T 3sfz_A 659 EVLCCAFSSDDSYIATCSADKKVKIWDSATGKL----VH--TYDEH----SEQVNCCHFTNKSNHLLLATGS-----NDF 723 (1249)
T ss_dssp CEEEEEECTTSSEEEEEETTSEEEEEETTTCCE----EE--EEECC----SSCEEEEEECSSSSCCEEEEEE-----TTS
T ss_pred CEEEEEEecCCCEEEEEeCCCeEEEEECCCCce----EE--EEcCC----CCcEEEEEEecCCCceEEEEEe-----CCC
Confidence 445789999999888777789999999887752 11 23211 1256788888753 33333332 245
Q ss_pred eEEEEECCCCcEEEEEecCCCCCCCCCccceEECCCCcEEEEeCCCCeEEEEcCC-CceEEEecCCCCC-Ccc--cccCc
Q 020019 125 AVAAYDLSTWNRLFLTQLSGPSDGKSCADDVTVDAEGNAYVTDVTGSKIWKVGVK-GEFLSIISSPLFT-PKE--WYKNL 200 (332)
Q Consensus 125 ~l~~~d~~~g~~~~~~~l~~~~~~~~~~ndiavd~dG~lyvtd~~~~~I~~v~~~-g~~~~~~~~~~~~-~p~--~~~~~ 200 (332)
.+..||.++++......- .....+.+++.|+|+.+++-+..+.|..++.. ++........... ... .....
T Consensus 724 ~v~vwd~~~~~~~~~~~~-----h~~~v~~~~~sp~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~ 798 (1249)
T 3sfz_A 724 FLKLWDLNQKECRNTMFG-----HTNSVNHCRFSPDDELLASCSADGTLRLWDVRSANERKSINVKRFFLSSEDPPEDVE 798 (1249)
T ss_dssp CEEEEETTSSSEEEEECC-----CSSCEEEEEECSSTTEEEEEESSSEEEEEEGGGTEEEEEEECCCCC--------CCC
T ss_pred eEEEEECCCcchhheecC-----CCCCEEEEEEecCCCEEEEEECCCeEEEEeCCCCcccceecccccccccCCcccccc
Confidence 689999998886543321 13467889999999988888888888888865 3333222211110 000 00112
Q ss_pred cccCeEEEccCc-eEEEEeCCCCeEEEEeCCCCCCccceeEEEEecCCCCCCCCeEEEeCCCeEEEEeC--CceEEEEcC
Q 020019 201 VGLNGIVYHPDG-FLIVIHTFSGNLFKIDIVDGVGEGEEIKLIRVAGGPLSFGDGLELLSPTKLVVAGN--PSARLVESS 277 (332)
Q Consensus 201 ~~~nGi~~~~dG-~Lyva~~~~~~i~~id~~~~~~~~~~~~~v~~~g~~~~~pdGi~~~~dG~l~va~~--~~~~~v~~~ 277 (332)
.....+++++|| .+.++. .+.+..++..++. ....+... .......+++.++|+++++.. ....+....
T Consensus 799 ~~v~~~~~s~dg~~l~~~~--~~~v~~~d~~~~~----~~~~~~~~--~~~~v~~~~~sp~~~~l~~~~~dg~v~vwd~~ 870 (1249)
T 3sfz_A 799 VIVKCCSWSADGDKIIVAA--KNKVLLFDIHTSG----LLAEIHTG--HHSTIQYCDFSPYDHLAVIALSQYCVELWNID 870 (1249)
T ss_dssp CCBCCCCBCTTSSEEEEEE--TTEEEEEETTTCC----EEEEEECS--SSSCCCEEEECSSTTEEEEECSSSCEEEEETT
T ss_pred ceEEEEEECCCCCEEEEEc--CCcEEEEEecCCC----ceeEEcCC--CCCceEEEEEcCCCCEEEEEeCCCeEEEEEcC
Confidence 356789999999 666654 5789999988762 34333322 335677899999988877753 233444455
Q ss_pred CCceEEEEEeeecCCCcccceEEEE-ECCeEEE
Q 020019 278 DGWETAAVVAKFSGPVHRLATAATV-KDGRVYL 309 (332)
Q Consensus 278 dg~~~~~~~~~~~~~~~~~pt~va~-~~g~lyv 309 (332)
++ . ....+.. .....+++++ .+++.++
T Consensus 871 ~~-~---~~~~~~~-h~~~v~~v~~spdg~~l~ 898 (1249)
T 3sfz_A 871 SR-L---KVADCRG-HLSWVHGVMFSPDGSSFL 898 (1249)
T ss_dssp TT-E---EEEEECC-CSSCEEEEEECTTSSEEE
T ss_pred CC-c---eeeecCC-CccceEEEEECCCCCEEE
Confidence 55 2 2222221 1233466777 4554444
|
| >4a9v_A PHOX; hydrolase, beta-propeller; 1.10A {Pseudomonas fluorescens} PDB: 3zwu_A 4a9x_A* | Back alignment and structure |
|---|
Probab=98.46 E-value=2.5e-06 Score=82.72 Aligned_cols=116 Identities=18% Similarity=0.270 Sum_probs=80.9
Q ss_pred ccceEEEeCCCCeEEEEEeCcCC----------------CccceEEEEECCCC-----cEEEEEec-CC-CC--------
Q 020019 98 GSLGLVLDHPRNRLLVVAADVFG----------------NKYSAVAAYDLSTW-----NRLFLTQL-SG-PS-------- 146 (332)
Q Consensus 98 ~~~gi~vd~~~g~l~v~~~~~~~----------------~~~~~l~~~d~~~g-----~~~~~~~l-~~-~~-------- 146 (332)
.|-+++++|.+|.+|++...... ++.+.|++|..+.+ +..+.+-+ .+ |.
T Consensus 385 RpEdi~v~p~~g~vY~alTnn~~rg~~~~~~~~~Npr~~n~~G~I~r~~e~~~d~~a~~f~W~i~l~~G~p~~~~~~~~~ 464 (592)
T 4a9v_A 385 RPEWIVVSPKDGQVYCTLTNNAKRGEDGQPVGGPNPREKNVYGQILRWRTDRDDHASKTFAWDLFVVAGNPSVHAGTPKG 464 (592)
T ss_dssp CEEEEEECTTTCCEEEEECCBTTTTSTTSCCBTTBCCSSBSSCEEEEEEEGGGCTTCSEEEEEEEEECCCTTTSTTSGGG
T ss_pred CccceeEcCCCCEEEEEEeCCCCCCCcCccccCCCCccCCCCCeEEEEeeCCCCcccceeeEEEEEEccCCccccccccc
Confidence 47899999988999999754211 23578999976432 22222111 11 10
Q ss_pred --------CCCCCccceEECCCCcEEE-EeCC-----------CCeEEEEcCC-CceEEEecCCCCCCcccccCccccCe
Q 020019 147 --------DGKSCADDVTVDAEGNAYV-TDVT-----------GSKIWKVGVK-GEFLSIISSPLFTPKEWYKNLVGLNG 205 (332)
Q Consensus 147 --------~~~~~~ndiavd~dG~lyv-td~~-----------~~~I~~v~~~-g~~~~~~~~~~~~~p~~~~~~~~~nG 205 (332)
.....|++|++|++|+||| ||.. ++.||+++++ |++.+++..+. ...+||
T Consensus 465 g~~~~~~~~~fnsPDnL~fd~~G~LWf~TD~~~~~~g~~~~~gnn~v~~~dp~tGel~~fl~~P~---------~aEpnG 535 (592)
T 4a9v_A 465 GSSNITPQNMFNSPDGLGFDKAGRLWILTDGDSSNAGDFAGMGNNQMLCADPATGEIRRFMVGPI---------GCEVTG 535 (592)
T ss_dssp CCTTCCTTTCCCCEEEEEECTTCCEEEEECCCCCCSGGGTTCCSCEEEEECTTTCCEEEEEECCT---------TCEEEE
T ss_pred CccCccccCccCCCCceEECCCCCEEEEeCCCcCccccccccCCceEEEEeCCCCeEEEEEeCCC---------CccccC
Confidence 1236899999999999999 8863 4489999995 78777764332 345899
Q ss_pred EEEccCc-eEEEEeCCCC
Q 020019 206 IVYHPDG-FLIVIHTFSG 222 (332)
Q Consensus 206 i~~~~dG-~Lyva~~~~~ 222 (332)
++|+||+ +|||+-+.-+
T Consensus 536 iafSPD~ktLfV~vQHPG 553 (592)
T 4a9v_A 536 ISFSPDQKTLFVGIQHPG 553 (592)
T ss_dssp EEECTTSSEEEEEEESTT
T ss_pred CEECCCCCEEEEEEeCCC
Confidence 9999999 9999977555
|
| >2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A* | Back alignment and structure |
|---|
Probab=98.46 E-value=3.5e-05 Score=76.95 Aligned_cols=190 Identities=11% Similarity=0.117 Sum_probs=106.1
Q ss_pred ccceEEcCCCCEEEEEecCCeEEEEECCCCCCCccce-eeeEEecccCc-------------CCCccceEEEeCCCCeEE
Q 020019 47 RECAKWDDSGRRFIVSFLDGGIGQVAVPDDYPPGTVL-EEVTLVKDLEL-------------TGNGSLGLVLDHPRNRLL 112 (332)
Q Consensus 47 pegia~d~~g~~~~~~~~~g~I~~vd~~~~~~~~~~~-~~~~~~~~~~~-------------~~~~~~gi~vd~~~g~l~ 112 (332)
+.++.|. |+.|+....++ | .+|..+++. . . .+...... ....+..++++++ +++.
T Consensus 28 ~~~~~w~--g~~~~~~~~~~-i-~~d~~tg~~----~~~--~l~~~~~~~~~l~~~~~~~~~~~~~v~~~~~spd-~~~~ 96 (706)
T 2z3z_A 28 VVGLQWM--GDNYVFIEGDD-L-VFNKANGKS----AQT--TRFSAADLNALMPEGCKFQTTDAFPSFRTLDAGR-GLVV 96 (706)
T ss_dssp CTTCEEE--TTEEEEEETTE-E-EEEC-----------C--EEEEHHHHHTTC-----------CCCEEEEETTT-TEEE
T ss_pred CCCCcCc--CCeEEEEeCCc-E-EEECCCCcE----eeE--EeechhHhhhhccchhccccccccCceeEEECCC-CeEE
Confidence 3557888 55555544444 8 999887762 0 1 22221110 0024678999997 7776
Q ss_pred EEEeCcCCCccceEEEEECCCCcEEEEEecCCCCCCCCCccceEECCCCc-EEEEeCCCCeEEEEcCCC------ceEEE
Q 020019 113 VVAADVFGNKYSAVAAYDLSTWNRLFLTQLSGPSDGKSCADDVTVDAEGN-AYVTDVTGSKIWKVGVKG------EFLSI 185 (332)
Q Consensus 113 v~~~~~~~~~~~~l~~~d~~~g~~~~~~~l~~~~~~~~~~ndiavd~dG~-lyvtd~~~~~I~~v~~~g------~~~~~ 185 (332)
++.. +.+++||.++++....... ......+++.|||+ |+++ ..+.|+.++.++ +...+
T Consensus 97 ~~~~-------~~i~~~d~~~~~~~~l~~~------~~~~~~~~~SpdG~~la~~--~~~~i~v~~~~~~~~~~g~~~~~ 161 (706)
T 2z3z_A 97 LFTQ-------GGLVGFDMLARKVTYLFDT------NEETASLDFSPVGDRVAYV--RNHNLYIARGGKLGEGMSRAIAV 161 (706)
T ss_dssp EEET-------TEEEEEETTTTEEEEEECC------TTCCTTCEECTTSSEEEEE--ETTEEEEEECBCTTSCCCCCEES
T ss_pred EEEC-------CEEEEEECCCCceEEccCC------cccccCCcCCCCCCEEEEE--ECCeEEEEecCcccccCCCcEEe
Confidence 6642 4789999998876543322 23467899999996 4444 357888888653 44332
Q ss_pred ecCCCCC----CcccccCccccCeEEEccCc-eEEEEeC--------------------------------CCCeEEEEe
Q 020019 186 ISSPLFT----PKEWYKNLVGLNGIVYHPDG-FLIVIHT--------------------------------FSGNLFKID 228 (332)
Q Consensus 186 ~~~~~~~----~p~~~~~~~~~nGi~~~~dG-~Lyva~~--------------------------------~~~~i~~id 228 (332)
....... .+..........+++|+||| .|+++.. ...+|+.++
T Consensus 162 ~~~~~~~~~~g~~~~~ee~~~~~~~~~SpDg~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~y~~~g~~~~~~~l~~~d 241 (706)
T 2z3z_A 162 TIDGTETLVYGQAVHQREFGIEKGTFWSPKGSCLAFYRMDQSMVKPTPIVDYHPLEAESKPLYYPMAGTPSHHVTVGIYH 241 (706)
T ss_dssp CSCCBTTEEESSCCGGGCTTCCCSEEECTTSSEEEEEEEECTTSCCEEEEECCSSSCEEEEECCCBTTSCCCEEEEEEEE
T ss_pred ccCCCCCeEcccchhhhhcCCCceEEECCCCCEEEEEEECCCCCceEEeeccCCCCCceEEeeCCCCCCCCCeeEEEEEE
Confidence 2111000 00000112235899999999 7777752 335688888
Q ss_pred CCCCCCccceeEEEEecCCCCCCCCeEEEeCCCe-EEEEe
Q 020019 229 IVDGVGEGEEIKLIRVAGGPLSFGDGLELLSPTK-LVVAG 267 (332)
Q Consensus 229 ~~~~~~~~~~~~~v~~~g~~~~~pdGi~~~~dG~-l~va~ 267 (332)
++++ ....+.........+..+++.+||+ |+++.
T Consensus 242 ~~~~-----~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~ 276 (706)
T 2z3z_A 242 LATG-----KTVYLQTGEPKEKFLTNLSWSPDENILYVAE 276 (706)
T ss_dssp TTTT-----EEEECCCCSCTTCEEEEEEECTTSSEEEEEE
T ss_pred CCCC-----ceEeeccCCCCceeEeeEEEECCCCEEEEEE
Confidence 8866 2322222101113355788999987 55543
|
| >3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R* | Back alignment and structure |
|---|
Probab=98.46 E-value=0.00054 Score=61.50 Aligned_cols=205 Identities=11% Similarity=-0.024 Sum_probs=125.3
Q ss_pred ecCCccccceEEcCCC-CEEEEEecCCeEEEEECCCCCCCccceee-eEEecccCcCCCccceEEEeCCCCeEEEEEeCc
Q 020019 41 HSSSFFRECAKWDDSG-RRFIVSFLDGGIGQVAVPDDYPPGTVLEE-VTLVKDLELTGNGSLGLVLDHPRNRLLVVAADV 118 (332)
Q Consensus 41 ~~~~~~pegia~d~~g-~~~~~~~~~g~I~~vd~~~~~~~~~~~~~-~~~~~~~~~~~~~~~gi~vd~~~g~l~v~~~~~ 118 (332)
.+.......+++.+++ +++++...++.|..++..+.... .... ..+.... .....+++.++ +++.++...
T Consensus 14 ~gH~~~V~~l~~~~~~~~~l~s~s~D~~v~~W~~~~~~~~--~~~~~~~~~~h~----~~v~~~~~s~d-g~~l~s~s~- 85 (319)
T 3frx_A 14 EGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQK--FGVPVRSFKGHS----HIVQDCTLTAD-GAYALSASW- 85 (319)
T ss_dssp CCCSSCEEEEEECSSCTTEEEEEETTSEEEEEEEEEETTE--EEEEEEEEECCS----SCEEEEEECTT-SSEEEEEET-
T ss_pred ccccceEEEEEccCCCccEEEEecCCccEEEecCCCCCcc--ccccceEEeCCc----ccEEEEEECCC-CCEEEEEeC-
Confidence 3433355678999865 67777777898888876432210 0000 0111111 25678999997 664444332
Q ss_pred CCCccceEEEEECCCCcEEEEEecCCCCCCCCCccceEECCCCcEEEEeCCCCeEEEEcCCCceEEEecCCCCCCccccc
Q 020019 119 FGNKYSAVAAYDLSTWNRLFLTQLSGPSDGKSCADDVTVDAEGNAYVTDVTGSKIWKVGVKGEFLSIISSPLFTPKEWYK 198 (332)
Q Consensus 119 ~~~~~~~l~~~d~~~g~~~~~~~l~~~~~~~~~~ndiavd~dG~lyvtd~~~~~I~~v~~~g~~~~~~~~~~~~~p~~~~ 198 (332)
.+.+.+||.++++....+.- . ......++++++++++++-+..+.|...+.+++....+...
T Consensus 86 ----D~~v~~wd~~~~~~~~~~~~--h---~~~v~~~~~~~~~~~l~s~s~D~~i~vwd~~~~~~~~~~~h--------- 147 (319)
T 3frx_A 86 ----DKTLRLWDVATGETYQRFVG--H---KSDVMSVDIDKKASMIISGSRDKTIKVWTIKGQCLATLLGH--------- 147 (319)
T ss_dssp ----TSEEEEEETTTTEEEEEEEC--C---SSCEEEEEECTTSCEEEEEETTSCEEEEETTSCEEEEECCC---------
T ss_pred ----CCEEEEEECCCCCeeEEEcc--C---CCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeEEEEecc---------
Confidence 35788999999886654331 1 24567899999999999888889888888877644332111
Q ss_pred CccccCeEEEcc------CceEEEEeCCCCeEEEEeCCCCCCccceeEEEEecCCCCCCCCeEEEeCCCeEEEEeC--Cc
Q 020019 199 NLVGLNGIVYHP------DGFLIVIHTFSGNLFKIDIVDGVGEGEEIKLIRVAGGPLSFGDGLELLSPTKLVVAGN--PS 270 (332)
Q Consensus 199 ~~~~~nGi~~~~------dG~Lyva~~~~~~i~~id~~~~~~~~~~~~~v~~~g~~~~~pdGi~~~~dG~l~va~~--~~ 270 (332)
......+++.| ++.++++-...+.|..+++...+ ....+ .+ .......+++.++|+++++.. ..
T Consensus 148 -~~~v~~~~~~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~----~~~~~--~~-h~~~v~~~~~sp~g~~l~s~~~dg~ 219 (319)
T 3frx_A 148 -NDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQFQ----IEADF--IG-HNSNINTLTASPDGTLIASAGKDGE 219 (319)
T ss_dssp -SSCEEEEEECCC------CCEEEEEETTSCEEEEETTTTE----EEEEE--CC-CCSCEEEEEECTTSSEEEEEETTCE
T ss_pred -CCcEEEEEEccCCCCCCCccEEEEEeCCCEEEEEECCcch----hheee--cC-CCCcEEEEEEcCCCCEEEEEeCCCe
Confidence 11234566666 34456666677888888888651 22222 21 224566899999998887753 33
Q ss_pred eEEEEcCCC
Q 020019 271 ARLVESSDG 279 (332)
Q Consensus 271 ~~~v~~~dg 279 (332)
.++-....+
T Consensus 220 i~iwd~~~~ 228 (319)
T 3frx_A 220 IMLWNLAAK 228 (319)
T ss_dssp EEEEETTTT
T ss_pred EEEEECCCC
Confidence 444445555
|
| >2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R | Back alignment and structure |
|---|
Probab=98.45 E-value=0.00031 Score=63.69 Aligned_cols=197 Identities=10% Similarity=0.061 Sum_probs=120.5
Q ss_pred cccceEEcCCCCEEEEEecCCeEEEEECCCCCCCccceeeeEEecccCcCCCccceEEEeCCCCeEEEEEeCcCCCccce
Q 020019 46 FRECAKWDDSGRRFIVSFLDGGIGQVAVPDDYPPGTVLEEVTLVKDLELTGNGSLGLVLDHPRNRLLVVAADVFGNKYSA 125 (332)
Q Consensus 46 ~pegia~d~~g~~~~~~~~~g~I~~vd~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~vd~~~g~l~v~~~~~~~~~~~~ 125 (332)
....+++++++.++++...++.|..+|..+++. .. .+.... .....++++++ ++.+++... .+.
T Consensus 78 ~V~~~~~~~~~~~l~s~s~D~~v~lwd~~~~~~----~~--~~~~h~----~~v~~v~~sp~-~~~l~s~~~-----d~~ 141 (343)
T 2xzm_R 78 FVSDLALSQENCFAISSSWDKTLRLWDLRTGTT----YK--RFVGHQ----SEVYSVAFSPD-NRQILSAGA-----ERE 141 (343)
T ss_dssp CEEEEEECSSTTEEEEEETTSEEEEEETTSSCE----EE--EEECCC----SCEEEEEECSS-TTEEEEEET-----TSC
T ss_pred ceEEEEECCCCCEEEEEcCCCcEEEEECCCCcE----EE--EEcCCC----CcEEEEEECCC-CCEEEEEcC-----CCE
Confidence 445789999999888778899999999876652 11 232211 25688999997 654444332 356
Q ss_pred EEEEECCCCcEEEEEecCCCCCCCCCccceEECCCC----------cEEEEeCCCCeEEEEcCCCceEEEecCCCCCCcc
Q 020019 126 VAAYDLSTWNRLFLTQLSGPSDGKSCADDVTVDAEG----------NAYVTDVTGSKIWKVGVKGEFLSIISSPLFTPKE 195 (332)
Q Consensus 126 l~~~d~~~g~~~~~~~l~~~~~~~~~~ndiavd~dG----------~lyvtd~~~~~I~~v~~~g~~~~~~~~~~~~~p~ 195 (332)
+..||... +....... ..........+++.|++ ..+++-+..+.|..++..++....+..
T Consensus 142 i~~wd~~~-~~~~~~~~--~~~~~~~v~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~------- 211 (343)
T 2xzm_R 142 IKLWNILG-ECKFSSAE--KENHSDWVSCVRYSPIMKSANKVQPFAPYFASVGWDGRLKVWNTNFQIRYTFKA------- 211 (343)
T ss_dssp EEEEESSS-CEEEECCT--TTSCSSCEEEEEECCCCCSCSCCCSSCCEEEEEETTSEEEEEETTTEEEEEEEC-------
T ss_pred EEEEeccC-Cceeeeec--ccCCCceeeeeeeccccccccccCCCCCEEEEEcCCCEEEEEcCCCceeEEEcC-------
Confidence 88999874 32221111 01112345667777765 577777778888888866554332211
Q ss_pred cccCccccCeEEEccCceEEEEeCCCCeEEEEeCCCCCCccceeEEEEecCCCCCCCCeEEEeCCCeEEEEe-CCceEEE
Q 020019 196 WYKNLVGLNGIVYHPDGFLIVIHTFSGNLFKIDIVDGVGEGEEIKLIRVAGGPLSFGDGLELLSPTKLVVAG-NPSARLV 274 (332)
Q Consensus 196 ~~~~~~~~nGi~~~~dG~Lyva~~~~~~i~~id~~~~~~~~~~~~~v~~~g~~~~~pdGi~~~~dG~l~va~-~~~~~~v 274 (332)
.....+.++|+|||.+.++-...+.|..+|+.... .....+... .....+++.+++.++.+. ....++.
T Consensus 212 ---h~~~v~~~~~s~~g~~l~sgs~dg~v~iwd~~~~~---~~~~~~~~~----~~v~~v~~sp~~~~la~~~d~~v~iw 281 (343)
T 2xzm_R 212 ---HESNVNHLSISPNGKYIATGGKDKKLLIWDILNLT---YPQREFDAG----STINQIAFNPKLQWVAVGTDQGVKIF 281 (343)
T ss_dssp ---CSSCEEEEEECTTSSEEEEEETTCEEEEEESSCCS---SCSEEEECS----SCEEEEEECSSSCEEEEEESSCEEEE
T ss_pred ---ccccceEEEECCCCCEEEEEcCCCeEEEEECCCCc---ccceeecCC----CcEEEEEECCCCCEEEEECCCCEEEE
Confidence 11235789999999666666678889888885331 123333222 235688999998877665 3334433
Q ss_pred EcCC
Q 020019 275 ESSD 278 (332)
Q Consensus 275 ~~~d 278 (332)
....
T Consensus 282 ~~~~ 285 (343)
T 2xzm_R 282 NLMT 285 (343)
T ss_dssp ESSS
T ss_pred EeCC
Confidence 4333
|
| >3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A | Back alignment and structure |
|---|
Probab=98.45 E-value=0.00012 Score=67.27 Aligned_cols=192 Identities=14% Similarity=0.095 Sum_probs=103.3
Q ss_pred CCCEEEEEecCCeEEEEECCCCCCCccceeeeEEecccCcCCCccceEEEeCCCCeEEEEEeCcCCCccceEEEEECCCC
Q 020019 55 SGRRFIVSFLDGGIGQVAVPDDYPPGTVLEEVTLVKDLELTGNGSLGLVLDHPRNRLLVVAADVFGNKYSAVAAYDLSTW 134 (332)
Q Consensus 55 ~g~~~~~~~~~g~I~~vd~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~vd~~~g~l~v~~~~~~~~~~~~l~~~d~~~g 134 (332)
++.+|+.+ .++.|+.+|..+++. .|...... .......++. +++|+... .+.|+.||.++|
T Consensus 103 ~~~v~v~~-~~g~l~a~d~~tG~~--------~W~~~~~~--~~~~~p~~~~--~~v~v~~~------~g~l~~~d~~tG 163 (376)
T 3q7m_A 103 GGHVYIGS-EKAQVYALNTSDGTV--------AWQTKVAG--EALSRPVVSD--GLVLIHTS------NGQLQALNEADG 163 (376)
T ss_dssp TTEEEEEE-TTSEEEEEETTTCCE--------EEEEECSS--CCCSCCEEET--TEEEEECT------TSEEEEEETTTC
T ss_pred CCEEEEEc-CCCEEEEEECCCCCE--------EEEEeCCC--ceEcCCEEEC--CEEEEEcC------CCeEEEEECCCC
Confidence 45555544 468999999987762 23321111 0111224443 78998764 357999999999
Q ss_pred cEEEEEecCCCCCCCCCccceEECCCCcEEEEeCCCCeEEEEcCC-CceEEEecCCCCCCcccccCcc-ccCeEEEccCc
Q 020019 135 NRLFLTQLSGPSDGKSCADDVTVDAEGNAYVTDVTGSKIWKVGVK-GEFLSIISSPLFTPKEWYKNLV-GLNGIVYHPDG 212 (332)
Q Consensus 135 ~~~~~~~l~~~~~~~~~~ndiavd~dG~lyvtd~~~~~I~~v~~~-g~~~~~~~~~~~~~p~~~~~~~-~~nGi~~~~dG 212 (332)
+..+......+..........+++ +|.+|+.. ..+.|+.+++. |+.................... .....++ .++
T Consensus 164 ~~~W~~~~~~~~~~~~~~~~~~~~-~~~v~~g~-~~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~~~p~~-~~~ 240 (376)
T 3q7m_A 164 AVKWTVNLDMPSLSLRGESAPTTA-FGAAVVGG-DNGRVSAVLMEQGQMIWQQRISQATGSTEIDRLSDVDTTPVV-VNG 240 (376)
T ss_dssp CEEEEEECCC-----CCCCCCEEE-TTEEEECC-TTTEEEEEETTTCCEEEEEECCC-----------CCCCCCEE-ETT
T ss_pred cEEEEEeCCCCceeecCCCCcEEE-CCEEEEEc-CCCEEEEEECCCCcEEEEEecccCCCCcccccccccCCCcEE-ECC
Confidence 988877663221101111234444 56788863 46889999975 6654322211000000000000 0011122 257
Q ss_pred eEEEEeCCCCeEEEEeCCCCCCccceeEEEEecCCCCCCCCeEEEeCCCeEEEEeCC-ceEEEEcCCC
Q 020019 213 FLIVIHTFSGNLFKIDIVDGVGEGEEIKLIRVAGGPLSFGDGLELLSPTKLVVAGNP-SARLVESSDG 279 (332)
Q Consensus 213 ~Lyva~~~~~~i~~id~~~~~~~~~~~~~v~~~g~~~~~pdGi~~~~dG~l~va~~~-~~~~v~~~dg 279 (332)
.+|+... .+.|+.+++.+++ ..-.... ....++.++ ++++|++... ....+...+|
T Consensus 241 ~v~~~~~-~g~l~~~d~~tG~----~~w~~~~-----~~~~~~~~~-~~~l~~~~~~g~l~~~d~~tG 297 (376)
T 3q7m_A 241 VVFALAY-NGNLTALDLRSGQ----IMWKREL-----GSVNDFIVD-GNRIYLVDQNDRVMALTIDGG 297 (376)
T ss_dssp EEEEECT-TSCEEEEETTTCC----EEEEECC-----CCEEEEEEE-TTEEEEEETTCCEEEEETTTC
T ss_pred EEEEEec-CcEEEEEECCCCc----EEeeccC-----CCCCCceEE-CCEEEEEcCCCeEEEEECCCC
Confidence 8998864 6689999998872 2222221 233456565 6899999754 4444555677
|
| >3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A* | Back alignment and structure |
|---|
Probab=98.44 E-value=0.00017 Score=76.74 Aligned_cols=207 Identities=11% Similarity=0.033 Sum_probs=132.1
Q ss_pred EEEecCCccccceEEcCCCCEEEEEecCCeEEEEECCCCCCCccceeeeEEecccCcCCCccceEEEeCCCCeEEEEEeC
Q 020019 38 YHYHSSSFFRECAKWDDSGRRFIVSFLDGGIGQVAVPDDYPPGTVLEEVTLVKDLELTGNGSLGLVLDHPRNRLLVVAAD 117 (332)
Q Consensus 38 i~~~~~~~~pegia~d~~g~~~~~~~~~g~I~~vd~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~vd~~~g~l~v~~~~ 117 (332)
+.+.+......+++++++|+++++...+|.|..++..+++. .. ++... ...+..++++++ |++.++...
T Consensus 609 ~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~i~vw~~~~~~~----~~--~~~~h----~~~v~~~~~s~~-~~~l~s~~~ 677 (1249)
T 3sfz_A 609 LVVRPHTDAVYHACFSQDGQRIASCGADKTLQVFKAETGEK----LL--DIKAH----EDEVLCCAFSSD-DSYIATCSA 677 (1249)
T ss_dssp EEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCE----EE--EECCC----SSCEEEEEECTT-SSEEEEEET
T ss_pred EEEecccccEEEEEECCCCCEEEEEeCCCeEEEEECCCCCE----EE--EeccC----CCCEEEEEEecC-CCEEEEEeC
Confidence 44444444566789999999888777789999999887652 11 22211 125789999997 664544432
Q ss_pred cCCCccceEEEEECCCCcEEEEEecCCCCCCCCCccceEECCC--CcEEEEeCCCCeEEEEcCC-CceEEEecCCCCCCc
Q 020019 118 VFGNKYSAVAAYDLSTWNRLFLTQLSGPSDGKSCADDVTVDAE--GNAYVTDVTGSKIWKVGVK-GEFLSIISSPLFTPK 194 (332)
Q Consensus 118 ~~~~~~~~l~~~d~~~g~~~~~~~l~~~~~~~~~~ndiavd~d--G~lyvtd~~~~~I~~v~~~-g~~~~~~~~~~~~~p 194 (332)
.+.+.+||.++++......- . ......+++.++ +.++++-+..+.|..++.. ++....+..
T Consensus 678 -----d~~v~vwd~~~~~~~~~~~~--~---~~~v~~~~~~~~~~~~~l~sg~~d~~v~vwd~~~~~~~~~~~~------ 741 (1249)
T 3sfz_A 678 -----DKKVKIWDSATGKLVHTYDE--H---SEQVNCCHFTNKSNHLLLATGSNDFFLKLWDLNQKECRNTMFG------ 741 (1249)
T ss_dssp -----TSEEEEEETTTCCEEEEEEC--C---SSCEEEEEECSSSSCCEEEEEETTSCEEEEETTSSSEEEEECC------
T ss_pred -----CCeEEEEECCCCceEEEEcC--C---CCcEEEEEEecCCCceEEEEEeCCCeEEEEECCCcchhheecC------
Confidence 35799999999887655432 1 245677889885 4577787788888888866 443322211
Q ss_pred ccccCccccCeEEEccCceEEEEeCCCCeEEEEeCCCCCCccceeEEEEecC----------CCCCCCCeEEEeCCCeEE
Q 020019 195 EWYKNLVGLNGIVYHPDGFLIVIHTFSGNLFKIDIVDGVGEGEEIKLIRVAG----------GPLSFGDGLELLSPTKLV 264 (332)
Q Consensus 195 ~~~~~~~~~nGi~~~~dG~Lyva~~~~~~i~~id~~~~~~~~~~~~~v~~~g----------~~~~~pdGi~~~~dG~l~ 264 (332)
.....+.++++|+|.+.++-...+.|..+++.++. ....+.... ........+++.++|+.+
T Consensus 742 ----h~~~v~~~~~sp~~~~l~s~s~dg~v~vwd~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l 813 (1249)
T 3sfz_A 742 ----HTNSVNHCRFSPDDELLASCSADGTLRLWDVRSAN----ERKSINVKRFFLSSEDPPEDVEVIVKCCSWSADGDKI 813 (1249)
T ss_dssp ----CSSCEEEEEECSSTTEEEEEESSSEEEEEEGGGTE----EEEEEECCCCC--------CCCCCBCCCCBCTTSSEE
T ss_pred ----CCCCEEEEEEecCCCEEEEEECCCeEEEEeCCCCc----ccceecccccccccCCccccccceEEEEEECCCCCEE
Confidence 11245789999999555566677889888887652 333333210 001135567888998877
Q ss_pred EEe-CCceEEEEcCCC
Q 020019 265 VAG-NPSARLVESSDG 279 (332)
Q Consensus 265 va~-~~~~~~v~~~dg 279 (332)
++. .+...+.....+
T Consensus 814 ~~~~~~~v~~~d~~~~ 829 (1249)
T 3sfz_A 814 IVAAKNKVLLFDIHTS 829 (1249)
T ss_dssp EEEETTEEEEEETTTC
T ss_pred EEEcCCcEEEEEecCC
Confidence 665 444444455555
|
| >3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe} | Back alignment and structure |
|---|
Probab=98.44 E-value=1.2e-05 Score=73.54 Aligned_cols=237 Identities=6% Similarity=-0.036 Sum_probs=124.9
Q ss_pred cccceEEcCCCCEEEEEecCCeEEEEECCCCCCCccceeeeEEecccCcCCCccceEEEeCCCCeEEEEEeCcCCCccce
Q 020019 46 FRECAKWDDSGRRFIVSFLDGGIGQVAVPDDYPPGTVLEEVTLVKDLELTGNGSLGLVLDHPRNRLLVVAADVFGNKYSA 125 (332)
Q Consensus 46 ~pegia~d~~g~~~~~~~~~g~I~~vd~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~vd~~~g~l~v~~~~~~~~~~~~ 125 (332)
....++++++|+++++...++.|..++..++... ... .+... ......+++.++ ++++++... .+.
T Consensus 13 ~v~~~~~s~~g~~l~~~~~d~~i~iw~~~~~~~~--~~~--~~~~h----~~~v~~~~~s~~-~~~l~s~s~-----d~~ 78 (377)
T 3dwl_C 13 PSYEHAFNSQRTEFVTTTATNQVELYEQDGNGWK--HAR--TFSDH----DKIVTCVDWAPK-SNRIVTCSQ-----DRN 78 (377)
T ss_dssp CCSCCEECSSSSEEECCCSSSCBCEEEEETTEEE--ECC--CBCCC----SSCEEEEEECTT-TCCEEEEET-----TSS
T ss_pred cEEEEEECCCCCEEEEecCCCEEEEEEccCCceE--EEE--EEecC----CceEEEEEEeCC-CCEEEEEeC-----CCe
Confidence 4578999999997776666788877777655210 001 12111 125788999997 554444331 356
Q ss_pred EEEEECCCCc-EEEEEecCCCCCCCCCccceEECCCCcEEEEeCCCCeEEEEcCCCce----EEEecCCCCCCcccccCc
Q 020019 126 VAAYDLSTWN-RLFLTQLSGPSDGKSCADDVTVDAEGNAYVTDVTGSKIWKVGVKGEF----LSIISSPLFTPKEWYKNL 200 (332)
Q Consensus 126 l~~~d~~~g~-~~~~~~l~~~~~~~~~~ndiavd~dG~lyvtd~~~~~I~~v~~~g~~----~~~~~~~~~~~p~~~~~~ 200 (332)
+.+||.++++ ......+.. .......+++.|+|+.+++-+..+.|..++.+... ...+..+ ..
T Consensus 79 v~vwd~~~~~~~~~~~~~~~---~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~---------h~ 146 (377)
T 3dwl_C 79 AYVYEKRPDGTWKQTLVLLR---LNRAATFVRWSPNEDKFAVGSGARVISVCYFEQENDWWVSKHLKRP---------LR 146 (377)
T ss_dssp EEEC------CCCCEEECCC---CSSCEEEEECCTTSSCCEEEESSSCEEECCC-----CCCCEEECSS---------CC
T ss_pred EEEEEcCCCCceeeeeEecc---cCCceEEEEECCCCCEEEEEecCCeEEEEEECCcccceeeeEeecc---------cC
Confidence 8899998766 222233321 13467789999999877776677888887765321 1212110 12
Q ss_pred cccCeEEEccCceEEEEeCCCCeEEEEeCCCCCCccc-----------eeEEEEecCCCCCCCCeEEEeCCCeEEEEe-C
Q 020019 201 VGLNGIVYHPDGFLIVIHTFSGNLFKIDIVDGVGEGE-----------EIKLIRVAGGPLSFGDGLELLSPTKLVVAG-N 268 (332)
Q Consensus 201 ~~~nGi~~~~dG~Lyva~~~~~~i~~id~~~~~~~~~-----------~~~~v~~~g~~~~~pdGi~~~~dG~l~va~-~ 268 (332)
...+.++++|+|.++++-...+.|..+++........ .-+.+..- ........+++.++|+++++. .
T Consensus 147 ~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~v~~~~~sp~~~~l~~~~~ 225 (377)
T 3dwl_C 147 STILSLDWHPNNVLLAAGCADRKAYVLSAYVRDVDAKPEASVWGSRLPFNTVCAEY-PSGGWVHAVGFSPSGNALAYAGH 225 (377)
T ss_dssp SCEEEEEECTTSSEEEEEESSSCEEEEEECCSSCC-CCCSCSSCSCCCEEEEEECC-CCSSSEEEEEECTTSSCEEEEET
T ss_pred CCeEEEEEcCCCCEEEEEeCCCEEEEEEEEecccCCCccccccccccchhhhhhcc-cCCceEEEEEECCCCCEEEEEeC
Confidence 3467999999995445555567787777653211000 01111111 122446789999999866664 3
Q ss_pred C-ceEEEEcCCCceEEEEEeeecCCCcccceEEEE-ECCeEEEE
Q 020019 269 P-SARLVESSDGWETAAVVAKFSGPVHRLATAATV-KDGRVYLN 310 (332)
Q Consensus 269 ~-~~~~v~~~dg~~~~~~~~~~~~~~~~~pt~va~-~~g~lyv~ 310 (332)
. ..++.....+.........+... ....+++++ .++++.++
T Consensus 226 d~~i~iwd~~~~~~~~~~~~~~~~~-~~~v~~~~~s~~~~~l~~ 268 (377)
T 3dwl_C 226 DSSVTIAYPSAPEQPPRALITVKLS-QLPLRSLLWANESAIVAA 268 (377)
T ss_dssp TTEEC-CEECSTTSCEEECCCEECS-SSCEEEEEEEETTEEEEE
T ss_pred CCcEEEEECCCCCCcceeeEeecCC-CCceEEEEEcCCCCEEEE
Confidence 2 23333444442211112222211 122466777 66666553
|
| >3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli} | Back alignment and structure |
|---|
Probab=98.42 E-value=0.0003 Score=70.32 Aligned_cols=198 Identities=13% Similarity=0.126 Sum_probs=125.0
Q ss_pred cccceEEcCCCCEEEEEecCCeEEEEECCCCCCCccceeeeEEecccCcCCCccceEEEeCCCCeEEEEEeCcCCCccce
Q 020019 46 FRECAKWDDSGRRFIVSFLDGGIGQVAVPDDYPPGTVLEEVTLVKDLELTGNGSLGLVLDHPRNRLLVVAADVFGNKYSA 125 (332)
Q Consensus 46 ~pegia~d~~g~~~~~~~~~g~I~~vd~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~vd~~~g~l~v~~~~~~~~~~~~ 125 (332)
....++++++|+++++...++.|..+|..++.. . ..+..+. .....++++++ ++.+++... .+.
T Consensus 432 ~v~~v~~s~~g~~l~sgs~Dg~v~vwd~~~~~~----~--~~~~~h~----~~v~~~~~s~~-~~~l~s~s~-----D~~ 495 (694)
T 3dm0_A 432 FVEDVVLSSDGQFALSGSWDGELRLWDLAAGVS----T--RRFVGHT----KDVLSVAFSLD-NRQIVSASR-----DRT 495 (694)
T ss_dssp CEEEEEECTTSSEEEEEETTSEEEEEETTTTEE----E--EEEECCS----SCEEEEEECTT-SSCEEEEET-----TSC
T ss_pred cEEEEEECCCCCEEEEEeCCCcEEEEECCCCcc----e--eEEeCCC----CCEEEEEEeCC-CCEEEEEeC-----CCE
Confidence 445789999999888888899999999876652 1 1232211 25688999997 554444332 356
Q ss_pred EEEEECCCCcEEEEEecCCCCCCCCCccceEECCCC--cEEEEeCCCCeEEEEcCCC-ceEEEecCCCCCCcccccCccc
Q 020019 126 VAAYDLSTWNRLFLTQLSGPSDGKSCADDVTVDAEG--NAYVTDVTGSKIWKVGVKG-EFLSIISSPLFTPKEWYKNLVG 202 (332)
Q Consensus 126 l~~~d~~~g~~~~~~~l~~~~~~~~~~ndiavd~dG--~lyvtd~~~~~I~~v~~~g-~~~~~~~~~~~~~p~~~~~~~~ 202 (332)
|.+||....... ...... .........+++.+++ ..+++-+..+.|..+|... +....+.. ....
T Consensus 496 i~iwd~~~~~~~-~~~~~~-~~h~~~v~~~~~~~~~~~~~l~s~s~d~~v~vwd~~~~~~~~~~~~----------h~~~ 563 (694)
T 3dm0_A 496 IKLWNTLGECKY-TISEGG-EGHRDWVSCVRFSPNTLQPTIVSASWDKTVKVWNLSNCKLRSTLAG----------HTGY 563 (694)
T ss_dssp EEEECTTSCEEE-EECSST-TSCSSCEEEEEECSCSSSCEEEEEETTSCEEEEETTTCCEEEEECC----------CSSC
T ss_pred EEEEECCCCcce-eeccCC-CCCCCcEEEEEEeCCCCcceEEEEeCCCeEEEEECCCCcEEEEEcC----------CCCC
Confidence 888998653332 221110 1112456789999986 4778877888888888763 43332221 1123
Q ss_pred cCeEEEccCceEEEEeCCCCeEEEEeCCCCCCccceeEEEEecCCCCCCCCeEEEeCCCeEEEEeC-CceEEEEcCCC
Q 020019 203 LNGIVYHPDGFLIVIHTFSGNLFKIDIVDGVGEGEEIKLIRVAGGPLSFGDGLELLSPTKLVVAGN-PSARLVESSDG 279 (332)
Q Consensus 203 ~nGi~~~~dG~Lyva~~~~~~i~~id~~~~~~~~~~~~~v~~~g~~~~~pdGi~~~~dG~l~va~~-~~~~~v~~~dg 279 (332)
.+.++++|||.++++-...+.|..+|+.+++ .+..+.. ......+++.+++.++++.. ..+++-....+
T Consensus 564 v~~v~~spdg~~l~sg~~Dg~i~iwd~~~~~----~~~~~~~----~~~v~~~~~sp~~~~l~~~~~~~i~iwd~~~~ 633 (694)
T 3dm0_A 564 VSTVAVSPDGSLCASGGKDGVVLLWDLAEGK----KLYSLEA----NSVIHALCFSPNRYWLCAATEHGIKIWDLESK 633 (694)
T ss_dssp EEEEEECTTSSEEEEEETTSBCEEEETTTTE----EEECCBC----SSCEEEEEECSSSSEEEEEETTEEEEEETTTT
T ss_pred EEEEEEeCCCCEEEEEeCCCeEEEEECCCCc----eEEEecC----CCcEEEEEEcCCCcEEEEEcCCCEEEEECCCC
Confidence 5789999999666666778889889988762 2322221 13456788999988777753 33444445555
|
| >3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A | Back alignment and structure |
|---|
Probab=98.42 E-value=0.00029 Score=65.11 Aligned_cols=203 Identities=9% Similarity=0.026 Sum_probs=124.4
Q ss_pred eEEcCCCCEEEEEecCCeEEEEECCCCCCCccceeeeEEecccCcCCCccceEEEeCCCCeEEEEEeCcCCCccceEEEE
Q 020019 50 AKWDDSGRRFIVSFLDGGIGQVAVPDDYPPGTVLEEVTLVKDLELTGNGSLGLVLDHPRNRLLVVAADVFGNKYSAVAAY 129 (332)
Q Consensus 50 ia~d~~g~~~~~~~~~g~I~~vd~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~vd~~~g~l~v~~~~~~~~~~~~l~~~ 129 (332)
.++.++++.+++...++.|..++..+++. ..... . -......++++++ ++++++... .+.+..|
T Consensus 103 ~~~~~~~~~l~~~~~dg~i~iwd~~~~~~-------~~~~~--~-h~~~v~~~~~~~~-~~~l~s~s~-----d~~i~iw 166 (420)
T 3vl1_A 103 DTAKLQMRRFILGTTEGDIKVLDSNFNLQ-------REIDQ--A-HVSEITKLKFFPS-GEALISSSQ-----DMQLKIW 166 (420)
T ss_dssp EEECSSSCEEEEEETTSCEEEECTTSCEE-------EEETT--S-SSSCEEEEEECTT-SSEEEEEET-----TSEEEEE
T ss_pred EEEecCCCEEEEEECCCCEEEEeCCCcce-------eeecc--c-ccCccEEEEECCC-CCEEEEEeC-----CCeEEEE
Confidence 36788998888777789999999875541 12221 1 1125789999997 654444332 3578999
Q ss_pred ECCCCcEEEEEecCCCCCCCCCccceEECCCCcEEEEeCCCCeEEEEcCC-CceEEEecCCCCC-Ccc------------
Q 020019 130 DLSTWNRLFLTQLSGPSDGKSCADDVTVDAEGNAYVTDVTGSKIWKVGVK-GEFLSIISSPLFT-PKE------------ 195 (332)
Q Consensus 130 d~~~g~~~~~~~l~~~~~~~~~~ndiavd~dG~lyvtd~~~~~I~~v~~~-g~~~~~~~~~~~~-~p~------------ 195 (332)
|.++++......- .......+++.|+|+.+++-+..+.|..+|.. ++....+...... .+.
T Consensus 167 d~~~~~~~~~~~~-----h~~~v~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~ 241 (420)
T 3vl1_A 167 SVKDGSNPRTLIG-----HRATVTDIAIIDRGRNVLSASLDGTIRLWECGTGTTIHTFNRKENPHDGVNSIALFVGTDRQ 241 (420)
T ss_dssp ETTTCCCCEEEEC-----CSSCEEEEEEETTTTEEEEEETTSCEEEEETTTTEEEEEECBTTBTTCCEEEEEEEECCCSS
T ss_pred eCCCCcCceEEcC-----CCCcEEEEEEcCCCCEEEEEcCCCcEEEeECCCCceeEEeecCCCCCCCccEEEEecCCcce
Confidence 9998876544331 12457789999999888888888888888865 4444333211000 000
Q ss_pred -cccCccccCeEEEccCceEEEEeCCCCeEEEEeCCCCCCccceeEEEEecCCCCCCCCeEEEeCCCe-EEEEe-C-Cce
Q 020019 196 -WYKNLVGLNGIVYHPDGFLIVIHTFSGNLFKIDIVDGVGEGEEIKLIRVAGGPLSFGDGLELLSPTK-LVVAG-N-PSA 271 (332)
Q Consensus 196 -~~~~~~~~nGi~~~~dG~Lyva~~~~~~i~~id~~~~~~~~~~~~~v~~~g~~~~~pdGi~~~~dG~-l~va~-~-~~~ 271 (332)
..........++++++|.+.++-...+.|..+++.+++ ....+.. ........+++.++|. ++++. . +..
T Consensus 242 ~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~----~~~~~~~--~~~~~v~~~~~~~~~~~~l~~g~~dg~i 315 (420)
T 3vl1_A 242 LHEISTSKKNNLEFGTYGKYVIAGHVSGVITVHNVFSKE----QTIQLPS--KFTCSCNSLTVDGNNANYIYAGYENGML 315 (420)
T ss_dssp CGGGCCCCCCTTCSSCTTEEEEEEETTSCEEEEETTTCC----EEEEECC--TTSSCEEEEEECSSCTTEEEEEETTSEE
T ss_pred eeecccCcccceEEcCCCCEEEEEcCCCeEEEEECCCCc----eeEEccc--ccCCCceeEEEeCCCCCEEEEEeCCCeE
Confidence 00012345678889999555555667889999998762 3333321 1224567899999987 55554 3 333
Q ss_pred EEEEcCCC
Q 020019 272 RLVESSDG 279 (332)
Q Consensus 272 ~~v~~~dg 279 (332)
++.....+
T Consensus 316 ~vwd~~~~ 323 (420)
T 3vl1_A 316 AQWDLRSP 323 (420)
T ss_dssp EEEETTCT
T ss_pred EEEEcCCC
Confidence 43444444
|
| >3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli} | Back alignment and structure |
|---|
Probab=98.40 E-value=0.00075 Score=67.37 Aligned_cols=211 Identities=11% Similarity=0.013 Sum_probs=132.2
Q ss_pred EecCCccccceEEcCCC-CEEEEEecCCeEEEEECCCCCCCccceeeeEEecccCcCCCccceEEEeCCCCeEEEEEeCc
Q 020019 40 YHSSSFFRECAKWDDSG-RRFIVSFLDGGIGQVAVPDDYPPGTVLEEVTLVKDLELTGNGSLGLVLDHPRNRLLVVAADV 118 (332)
Q Consensus 40 ~~~~~~~pegia~d~~g-~~~~~~~~~g~I~~vd~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~vd~~~g~l~v~~~~~ 118 (332)
+.+......++++++++ +++++...++.|..++............ ..+..+. .....++++++ +++.++...
T Consensus 378 l~~H~~~V~~v~~~~~~~~~l~s~s~D~~i~~W~~~~~~~~~~~~~-~~~~~h~----~~v~~v~~s~~-g~~l~sgs~- 450 (694)
T 3dm0_A 378 MRAHTDMVTAIATPIDNADIIVSASRDKSIILWKLTKDDKAYGVAQ-RRLTGHS----HFVEDVVLSSD-GQFALSGSW- 450 (694)
T ss_dssp EECCSSCEEEEECCTTCCSEEEEEETTSEEEEEECCCSTTCSCEEE-EEEECCS----SCEEEEEECTT-SSEEEEEET-
T ss_pred cccCCceeEEEEecCCCCCEEEEEeCCCcEEEEEccCCCccccccc-ceecCCC----CcEEEEEECCC-CCEEEEEeC-
Confidence 34444455678888775 5666777789998888764331000001 1121111 25678999997 665555432
Q ss_pred CCCccceEEEEECCCCcEEEEEecCCCCCCCCCccceEECCCCcEEEEeCCCCeEEEEcCCCceEEEecCCCCCCccccc
Q 020019 119 FGNKYSAVAAYDLSTWNRLFLTQLSGPSDGKSCADDVTVDAEGNAYVTDVTGSKIWKVGVKGEFLSIISSPLFTPKEWYK 198 (332)
Q Consensus 119 ~~~~~~~l~~~d~~~g~~~~~~~l~~~~~~~~~~ndiavd~dG~lyvtd~~~~~I~~v~~~g~~~~~~~~~~~~~p~~~~ 198 (332)
.+.|.+||.++++......- . ......+++.++|+.+++-+..+.|...+..+........... .
T Consensus 451 ----Dg~v~vwd~~~~~~~~~~~~--h---~~~v~~~~~s~~~~~l~s~s~D~~i~iwd~~~~~~~~~~~~~~------~ 515 (694)
T 3dm0_A 451 ----DGELRLWDLAAGVSTRRFVG--H---TKDVLSVAFSLDNRQIVSASRDRTIKLWNTLGECKYTISEGGE------G 515 (694)
T ss_dssp ----TSEEEEEETTTTEEEEEEEC--C---SSCEEEEEECTTSSCEEEEETTSCEEEECTTSCEEEEECSSTT------S
T ss_pred ----CCcEEEEECCCCcceeEEeC--C---CCCEEEEEEeCCCCEEEEEeCCCEEEEEECCCCcceeeccCCC------C
Confidence 45789999998876544321 1 2456789999999888888888999888877653332211110 0
Q ss_pred CccccCeEEEccCc--eEEEEeCCCCeEEEEeCCCCCCccceeEEEEecCCCCCCCCeEEEeCCCeEEEEeC--CceEEE
Q 020019 199 NLVGLNGIVYHPDG--FLIVIHTFSGNLFKIDIVDGVGEGEEIKLIRVAGGPLSFGDGLELLSPTKLVVAGN--PSARLV 274 (332)
Q Consensus 199 ~~~~~nGi~~~~dG--~Lyva~~~~~~i~~id~~~~~~~~~~~~~v~~~g~~~~~pdGi~~~~dG~l~va~~--~~~~~v 274 (332)
.......+++++++ .++++-...+.|..+|+.+.+ ....+. .+......+++.++|+++++.. ..+++-
T Consensus 516 h~~~v~~~~~~~~~~~~~l~s~s~d~~v~vwd~~~~~----~~~~~~---~h~~~v~~v~~spdg~~l~sg~~Dg~i~iw 588 (694)
T 3dm0_A 516 HRDWVSCVRFSPNTLQPTIVSASWDKTVKVWNLSNCK----LRSTLA---GHTGYVSTVAVSPDGSLCASGGKDGVVLLW 588 (694)
T ss_dssp CSSCEEEEEECSCSSSCEEEEEETTSCEEEEETTTCC----EEEEEC---CCSSCEEEEEECTTSSEEEEEETTSBCEEE
T ss_pred CCCcEEEEEEeCCCCcceEEEEeCCCeEEEEECCCCc----EEEEEc---CCCCCEEEEEEeCCCCEEEEEeCCCeEEEE
Confidence 12235789999987 466666778889889988662 333332 1334567899999999888753 334554
Q ss_pred EcCCC
Q 020019 275 ESSDG 279 (332)
Q Consensus 275 ~~~dg 279 (332)
....+
T Consensus 589 d~~~~ 593 (694)
T 3dm0_A 589 DLAEG 593 (694)
T ss_dssp ETTTT
T ss_pred ECCCC
Confidence 55666
|
| >1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X | Back alignment and structure |
|---|
Probab=98.39 E-value=0.00012 Score=67.17 Aligned_cols=224 Identities=13% Similarity=0.053 Sum_probs=127.1
Q ss_pred EEEecCCccccceEEcCC----C---CEEEEEecCCeEEEEECCCCCCCccc-eeeeEEecccCc-CCCccceEEEe---
Q 020019 38 YHYHSSSFFRECAKWDDS----G---RRFIVSFLDGGIGQVAVPDDYPPGTV-LEEVTLVKDLEL-TGNGSLGLVLD--- 105 (332)
Q Consensus 38 i~~~~~~~~pegia~d~~----g---~~~~~~~~~g~I~~vd~~~~~~~~~~-~~~~~~~~~~~~-~~~~~~gi~vd--- 105 (332)
..+.........+++.++ | +++++...++.|..++..+++..... .. .+...+.. ....+..+.+.
T Consensus 56 ~~~~~h~~~v~~~~~~~~~~~~g~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~--~~~~~~~~~~~~~v~~~~~~~~~ 133 (397)
T 1sq9_A 56 YSHFVHKSGLHHVDVLQAIERDAFELCLVATTSFSGDLLFYRITREDETKKVIFE--KLDLLDSDMKKHSFWALKWGASN 133 (397)
T ss_dssp EEEECCTTCEEEEEEEEEEETTTEEEEEEEEEETTSCEEEEEEEECTTTCCEEEE--EECCSCTTGGGSCEEEEEEECCC
T ss_pred eEEecCCCcEEEEEEecccccCCccccEEEEEcCCCCEEEEEccCCcccccccce--eecccccccCCCcEEEEEEeecc
Confidence 333433335567899998 8 87777777898888887655421000 11 22111100 01357889999
Q ss_pred -CCCCeE-EEEEeCcCCCccceEEEEECCC------CcEEE-----EEec--CCCCCCCCCccceEECCCCcEEEEeCCC
Q 020019 106 -HPRNRL-LVVAADVFGNKYSAVAAYDLST------WNRLF-----LTQL--SGPSDGKSCADDVTVDAEGNAYVTDVTG 170 (332)
Q Consensus 106 -~~~g~l-~v~~~~~~~~~~~~l~~~d~~~------g~~~~-----~~~l--~~~~~~~~~~ndiavd~dG~lyvtd~~~ 170 (332)
++ +.. +++... .+.+..||.++ ++... .+.. ..+.........+++.++| ++++-...
T Consensus 134 ~~~-~~~~l~~~~~-----dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~l~~~~~d 206 (397)
T 1sq9_A 134 DRL-LSHRLVATDV-----KGTTYIWKFHPFADESNSLTLNWSPTLELQGTVESPMTPSQFATSVDISERG-LIATGFNN 206 (397)
T ss_dssp -----CEEEEEEET-----TSCEEEEEEESSSSHHHHTTTCCCCEEEEEEEECCSSSSCCCCCEEEECTTS-EEEEECTT
T ss_pred CCC-CceEEEEEeC-----CCcEEEEeCCccccccccceeeccCcceeeeeeccccCCCCCceEEEECCCc-eEEEEeCC
Confidence 86 554 444322 35688899876 43322 1210 0001113567889999999 88888888
Q ss_pred CeEEEEcCC-CceEEEecCC-CCCCcccccCccccCeEEEccCceEEEEeCCC---CeEEEEeCCCCCCccceeEEEEec
Q 020019 171 SKIWKVGVK-GEFLSIISSP-LFTPKEWYKNLVGLNGIVYHPDGFLIVIHTFS---GNLFKIDIVDGVGEGEEIKLIRVA 245 (332)
Q Consensus 171 ~~I~~v~~~-g~~~~~~~~~-~~~~p~~~~~~~~~nGi~~~~dG~Lyva~~~~---~~i~~id~~~~~~~~~~~~~v~~~ 245 (332)
+.|..++.. ++....+... .-. ........+++++++.++++-... +.|..+++.+++ .+..+..+
T Consensus 207 g~i~i~d~~~~~~~~~~~~~~~h~-----~~~~~i~~i~~~~~~~~l~~~~~d~~~g~i~i~d~~~~~----~~~~~~~~ 277 (397)
T 1sq9_A 207 GTVQISELSTLRPLYNFESQHSMI-----NNSNSIRSVKFSPQGSLLAIAHDSNSFGCITLYETEFGE----RIGSLSVP 277 (397)
T ss_dssp SEEEEEETTTTEEEEEEECCC--------CCCCCEEEEEECSSTTEEEEEEEETTEEEEEEEETTTCC----EEEEECBC
T ss_pred CcEEEEECCCCceeEEEecccccc-----ccCCccceEEECCCCCEEEEEecCCCCceEEEEECCCCc----ccceeccC
Confidence 999999976 4444333220 000 002346799999999444444445 789999988762 34444321
Q ss_pred C----------CCCCCCCeEEEeCCCeEEEEeC--CceEEEEcCCC
Q 020019 246 G----------GPLSFGDGLELLSPTKLVVAGN--PSARLVESSDG 279 (332)
Q Consensus 246 g----------~~~~~pdGi~~~~dG~l~va~~--~~~~~v~~~dg 279 (332)
. ........+++.++|+++++.. ...++....++
T Consensus 278 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~ 323 (397)
T 1sq9_A 278 THSSQASLGEFAHSSWVMSLSFNDSGETLCSAGWDGKLRFWDVKTK 323 (397)
T ss_dssp --------CCBSBSSCEEEEEECSSSSEEEEEETTSEEEEEETTTT
T ss_pred cccccccccccccCCcEEEEEECCCCCEEEEEeCCCeEEEEEcCCC
Confidence 0 0123456899999988777753 33444455566
|
| >2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.39 E-value=2.3e-05 Score=72.37 Aligned_cols=211 Identities=8% Similarity=0.085 Sum_probs=124.8
Q ss_pred ccceEEcCCCCEEEEEecCCeEEEEECCCCCCCccceeeeEEecccCcCCCccceEEEeCCCCeEEEEEeCcCCCccceE
Q 020019 47 RECAKWDDSGRRFIVSFLDGGIGQVAVPDDYPPGTVLEEVTLVKDLELTGNGSLGLVLDHPRNRLLVVAADVFGNKYSAV 126 (332)
Q Consensus 47 pegia~d~~g~~~~~~~~~g~I~~vd~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~vd~~~g~l~v~~~~~~~~~~~~l 126 (332)
...++|+++++++++...++.|..++..+.... .+...... + -......+++.+++++++++... .+.|
T Consensus 70 v~~~~~s~~~~~l~~~~~dg~v~vw~~~~~~~~---~~~~~~~~--~-h~~~v~~~~~~~~~~~~l~s~~~-----dg~v 138 (416)
T 2pm9_A 70 FNDLDWSHNNKIIAGALDNGSLELYSTNEANNA---INSMARFS--N-HSSSVKTVKFNAKQDNVLASGGN-----NGEI 138 (416)
T ss_dssp EEEEEECSSSSCEEEEESSSCEEEECCSSTTSC---CCEEEECC--C-SSSCCCEEEECSSSTTBEEEECS-----SSCE
T ss_pred eEEEEECCCCCeEEEEccCCeEEEeeccccccc---ccchhhcc--C-CccceEEEEEcCCCCCEEEEEcC-----CCeE
Confidence 457899999998887777899999987752100 00001111 1 11256889999863444444332 3568
Q ss_pred EEEECCCCc------EEEEEecCCCCCCCCCccceEECCC-CcEEEEeCCCCeEEEEcCC-CceEEEecCCCCCCccccc
Q 020019 127 AAYDLSTWN------RLFLTQLSGPSDGKSCADDVTVDAE-GNAYVTDVTGSKIWKVGVK-GEFLSIISSPLFTPKEWYK 198 (332)
Q Consensus 127 ~~~d~~~g~------~~~~~~l~~~~~~~~~~ndiavd~d-G~lyvtd~~~~~I~~v~~~-g~~~~~~~~~~~~~p~~~~ 198 (332)
..||.++++ ....... ..........+++.++ ++++++-...+.|..++.. ++....+...... ..
T Consensus 139 ~iwd~~~~~~~~~~~~~~~~~~--~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~----~~ 212 (416)
T 2pm9_A 139 FIWDMNKCTESPSNYTPLTPGQ--SMSSVDEVISLAWNQSLAHVFASAGSSNFASIWDLKAKKEVIHLSYTSPN----SG 212 (416)
T ss_dssp EBCBTTTTSSCTTTCCCBCCCC--SCCSSCCCCEEEECSSCTTEEEEESSSSCEEEEETTTTEEEEEECCCCCS----SC
T ss_pred EEEECCCCcccccccccccccc--ccCCCCCeeEEEeCCCCCcEEEEEcCCCCEEEEECCCCCcceEEeccccc----cc
Confidence 899998775 2211110 0111346788999999 6788888888999999976 3433333211000 00
Q ss_pred CccccCeEEEccCc-eEEEEeCCCC---eEEEEeCCCCCCccceeEEEEecCCCCCCCCeEEEeC-CCeEEEEeC--Cce
Q 020019 199 NLVGLNGIVYHPDG-FLIVIHTFSG---NLFKIDIVDGVGEGEEIKLIRVAGGPLSFGDGLELLS-PTKLVVAGN--PSA 271 (332)
Q Consensus 199 ~~~~~nGi~~~~dG-~Lyva~~~~~---~i~~id~~~~~~~~~~~~~v~~~g~~~~~pdGi~~~~-dG~l~va~~--~~~ 271 (332)
.......++++|+| .++++-...+ .|..+++.++.. ....+.. + .......+++.+ +++++++.. ...
T Consensus 213 ~~~~v~~~~~~~~~~~~l~~~~~d~~~~~i~~~d~~~~~~---~~~~~~~-~-~~~~v~~~~~s~~~~~~l~s~~~dg~v 287 (416)
T 2pm9_A 213 IKQQLSVVEWHPKNSTRVATATGSDNDPSILIWDLRNANT---PLQTLNQ-G-HQKGILSLDWCHQDEHLLLSSGRDNTV 287 (416)
T ss_dssp CCCCEEEEEECSSCTTEEEEEECCSSSCCCCEEETTSTTS---CSBCCCS-C-CSSCEEEEEECSSCSSCEEEEESSSEE
T ss_pred cCCceEEEEECCCCCCEEEEEECCCCCceEEEEeCCCCCC---CcEEeec-C-ccCceeEEEeCCCCCCeEEEEeCCCCE
Confidence 02346899999998 6666666666 888888886521 2222220 1 224566888988 787777653 333
Q ss_pred EEEEcCCC
Q 020019 272 RLVESSDG 279 (332)
Q Consensus 272 ~~v~~~dg 279 (332)
++.....+
T Consensus 288 ~~wd~~~~ 295 (416)
T 2pm9_A 288 LLWNPESA 295 (416)
T ss_dssp EEECSSSC
T ss_pred EEeeCCCC
Confidence 43344455
|
| >4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe} | Back alignment and structure |
|---|
Probab=98.39 E-value=0.00061 Score=63.07 Aligned_cols=196 Identities=13% Similarity=0.093 Sum_probs=122.2
Q ss_pred cccceEEcCCCCEEEEEecCCeEEEEECCCCCCCccceeeeEEecccCcCCCccceEEEeCCCCeEEEEEeCcCCCccce
Q 020019 46 FRECAKWDDSGRRFIVSFLDGGIGQVAVPDDYPPGTVLEEVTLVKDLELTGNGSLGLVLDHPRNRLLVVAADVFGNKYSA 125 (332)
Q Consensus 46 ~pegia~d~~g~~~~~~~~~g~I~~vd~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~vd~~~g~l~v~~~~~~~~~~~~ 125 (332)
....+.++ ++.+++...++.|..++...... ... .+.... ....++.++++ +.++++... .+.
T Consensus 178 ~v~~~~~~--~~~l~~~~~dg~i~i~d~~~~~~---~~~--~~~~~~----~~v~~~~~~~~-~~~l~s~~~-----d~~ 240 (401)
T 4aez_A 178 RVGCLSWN--RHVLSSGSRSGAIHHHDVRIANH---QIG--TLQGHS----SEVCGLAWRSD-GLQLASGGN-----DNV 240 (401)
T ss_dssp CEEEEEEE--TTEEEEEETTSEEEEEETTSSSC---EEE--EEECCS----SCEEEEEECTT-SSEEEEEET-----TSC
T ss_pred ceEEEEEC--CCEEEEEcCCCCEEEEecccCcc---eee--EEcCCC----CCeeEEEEcCC-CCEEEEEeC-----CCe
Confidence 33456663 56666667789999999864332 111 222111 25788999996 654544432 357
Q ss_pred EEEEECCCCcEEEEEecCCCCCCCCCccceEECCCC-cEEEEeC--CCCeEEEEcCC-CceEEEecCCCCCCcccccCcc
Q 020019 126 VAAYDLSTWNRLFLTQLSGPSDGKSCADDVTVDAEG-NAYVTDV--TGSKIWKVGVK-GEFLSIISSPLFTPKEWYKNLV 201 (332)
Q Consensus 126 l~~~d~~~g~~~~~~~l~~~~~~~~~~ndiavd~dG-~lyvtd~--~~~~I~~v~~~-g~~~~~~~~~~~~~p~~~~~~~ 201 (332)
+..||.++++......- .......+++.|+| +++++.. ..+.|..++.. ++....+.. ..
T Consensus 241 v~iwd~~~~~~~~~~~~-----~~~~v~~~~~~p~~~~ll~~~~gs~d~~i~i~d~~~~~~~~~~~~-----------~~ 304 (401)
T 4aez_A 241 VQIWDARSSIPKFTKTN-----HNAAVKAVAWCPWQSNLLATGGGTMDKQIHFWNAATGARVNTVDA-----------GS 304 (401)
T ss_dssp EEEEETTCSSEEEEECC-----CSSCCCEEEECTTSTTEEEEECCTTTCEEEEEETTTCCEEEEEEC-----------SS
T ss_pred EEEccCCCCCccEEecC-----CcceEEEEEECCCCCCEEEEecCCCCCEEEEEECCCCCEEEEEeC-----------CC
Confidence 89999998877654321 13457789999986 5777754 68889999875 444433321 12
Q ss_pred ccCeEEEccCc-eEEEEe-CCCCeEEEEeCCCCCCccceeEEEEecCCCCCCCCeEEEeCCCeEEEEeC--CceEEEEcC
Q 020019 202 GLNGIVYHPDG-FLIVIH-TFSGNLFKIDIVDGVGEGEEIKLIRVAGGPLSFGDGLELLSPTKLVVAGN--PSARLVESS 277 (332)
Q Consensus 202 ~~nGi~~~~dG-~Lyva~-~~~~~i~~id~~~~~~~~~~~~~v~~~g~~~~~pdGi~~~~dG~l~va~~--~~~~~v~~~ 277 (332)
....++++++| .|+++. ...+.|..++..++. ........+ .......+++.++|+++++.. +..++....
T Consensus 305 ~v~~~~~s~~~~~l~~~~g~~dg~i~v~~~~~~~----~~~~~~~~~-h~~~v~~~~~s~dg~~l~s~~~dg~i~iw~~~ 379 (401)
T 4aez_A 305 QVTSLIWSPHSKEIMSTHGFPDNNLSIWSYSSSG----LTKQVDIPA-HDTRVLYSALSPDGRILSTAASDENLKFWRVY 379 (401)
T ss_dssp CEEEEEECSSSSEEEEEECTTTCEEEEEEEETTE----EEEEEEEEC-CSSCCCEEEECTTSSEEEEECTTSEEEEEECC
T ss_pred cEEEEEECCCCCeEEEEeecCCCcEEEEecCCcc----ceeEEEecC-CCCCEEEEEECCCCCEEEEEeCCCcEEEEECC
Confidence 36789999999 666553 367888888887652 233333332 335677899999998777753 233333444
Q ss_pred CC
Q 020019 278 DG 279 (332)
Q Consensus 278 dg 279 (332)
++
T Consensus 380 ~~ 381 (401)
T 4aez_A 380 DG 381 (401)
T ss_dssp C-
T ss_pred CC
Confidence 44
|
| >3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A | Back alignment and structure |
|---|
Probab=98.39 E-value=1.9e-05 Score=77.25 Aligned_cols=174 Identities=16% Similarity=0.104 Sum_probs=100.6
Q ss_pred cccceEEcCCCCEEEEEec---C--CeEEEEEC--CCCCCCccceeeeEEecccCcCCCccceEEEeCCC-CeEEEEEeC
Q 020019 46 FRECAKWDDSGRRFIVSFL---D--GGIGQVAV--PDDYPPGTVLEEVTLVKDLELTGNGSLGLVLDHPR-NRLLVVAAD 117 (332)
Q Consensus 46 ~pegia~d~~g~~~~~~~~---~--g~I~~vd~--~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~vd~~~-g~l~v~~~~ 117 (332)
....++|+|+ +++++... . .+|+.++. +++. . .+... . +.....+.++. +.+|++...
T Consensus 66 ~~~~~~~spd-~~l~~~~~~~g~~~~~l~~~~~~~~g~~------~--~l~~~---~--~~~~~~~s~dg~~~~~~s~~~ 131 (582)
T 3o4h_A 66 SVLDPHYGVG-RVILVRDVSKGAEQHALFKVNTSRPGEE------Q--RLEAV---K--PMRILSGVDTGEAVVFTGATE 131 (582)
T ss_dssp EECEECTTCS-EEEEEEECSTTSCCEEEEEEETTSTTCC------E--ECTTS---C--SBEEEEEEECSSCEEEEEECS
T ss_pred ccccccCCCC-eEEEEeccCCCCcceEEEEEeccCCCcc------c--cccCC---C--CceeeeeCCCCCeEEEEecCC
Confidence 3456788988 66665532 2 26888887 4332 1 22211 1 22234555542 344554432
Q ss_pred cCCCccceEEEEECCCCcEEEEEecCCCCCCCCCccceEECCCCcEEE-Ee-C-C-CCeEEEEcCC-CceEEEecCCCCC
Q 020019 118 VFGNKYSAVAAYDLSTWNRLFLTQLSGPSDGKSCADDVTVDAEGNAYV-TD-V-T-GSKIWKVGVK-GEFLSIISSPLFT 192 (332)
Q Consensus 118 ~~~~~~~~l~~~d~~~g~~~~~~~l~~~~~~~~~~ndiavd~dG~lyv-td-~-~-~~~I~~v~~~-g~~~~~~~~~~~~ 192 (332)
..+..||+++++.......+ . .+++++|||+.++ +. . . ...|+.+|.+ |+...+...
T Consensus 132 ------~~~~l~d~~~g~~~~l~~~~------~--~~~~~spDG~~la~~~~~~~~~~~i~~~d~~~g~~~~l~~~---- 193 (582)
T 3o4h_A 132 ------DRVALYALDGGGLRELARLP------G--FGFVSDIRGDLIAGLGFFGGGRVSLFTSNLSSGGLRVFDSG---- 193 (582)
T ss_dssp ------SCEEEEEEETTEEEEEEEES------S--CEEEEEEETTEEEEEEEEETTEEEEEEEETTTCCCEEECCS----
T ss_pred ------CCceEEEccCCcEEEeecCC------C--ceEEECCCCCEEEEEEEcCCCCeEEEEEcCCCCCceEeecC----
Confidence 23457899888766544331 1 7899999997444 32 1 1 2679999976 554443221
Q ss_pred CcccccCccccCeEEEccCc-eEEEEeCCCC--eEEEEeCCCCCCccceeEEEEecCCCCCCCCeEE--------EeCCC
Q 020019 193 PKEWYKNLVGLNGIVYHPDG-FLIVIHTFSG--NLFKIDIVDGVGEGEEIKLIRVAGGPLSFGDGLE--------LLSPT 261 (332)
Q Consensus 193 ~p~~~~~~~~~nGi~~~~dG-~Lyva~~~~~--~i~~id~~~~~~~~~~~~~v~~~g~~~~~pdGi~--------~~~dG 261 (332)
....+.++|+||| .|+.++. .+ +|++++++++ ... + +.+ ....+.+++ +++||
T Consensus 194 -------~~~~~~~~~SpDG~~l~~~~~-~~~~~i~~~d~~~~-----~~~-~-~~~-~~~~~~~~~~~~~~~~~~spdg 257 (582)
T 3o4h_A 194 -------EGSFSSASISPGMKVTAGLET-AREARLVTVDPRDG-----SVE-D-LEL-PSKDFSSYRPTAITWLGYLPDG 257 (582)
T ss_dssp -------SCEEEEEEECTTSCEEEEEEC-SSCEEEEEECTTTC-----CEE-E-CCC-SCSHHHHHCCSEEEEEEECTTS
T ss_pred -------CCccccceECCCCCEEEEccC-CCeeEEEEEcCCCC-----cEE-E-ccC-CCcChhhhhhccccceeEcCCC
Confidence 1224789999999 7775544 44 8999999877 233 2 221 112233344 99999
Q ss_pred eEEEEe
Q 020019 262 KLVVAG 267 (332)
Q Consensus 262 ~l~va~ 267 (332)
.+|++.
T Consensus 258 ~~~~~~ 263 (582)
T 3o4h_A 258 RLAVVA 263 (582)
T ss_dssp CEEEEE
T ss_pred cEEEEE
Confidence 888875
|
| >3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.38 E-value=0.001 Score=58.39 Aligned_cols=219 Identities=14% Similarity=0.135 Sum_probs=129.9
Q ss_pred cccceEEcCCCCEEEEEecCCeEEEEECCCCCCCccceeeeEEecccCcCCCccceEEEeCCCCeEEEEEeCcCCCccce
Q 020019 46 FRECAKWDDSGRRFIVSFLDGGIGQVAVPDDYPPGTVLEEVTLVKDLELTGNGSLGLVLDHPRNRLLVVAADVFGNKYSA 125 (332)
Q Consensus 46 ~pegia~d~~g~~~~~~~~~g~I~~vd~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~vd~~~g~l~v~~~~~~~~~~~~ 125 (332)
....++++++++.+++...++.|..++........ ... .+... ......+.+++ +.++.+.. .+.
T Consensus 61 ~v~~~~~~~~~~~l~~~~~dg~i~~~~~~~~~~~~-~~~--~~~~~----~~~i~~~~~~~--~~l~~~~~------d~~ 125 (313)
T 3odt_A 61 FLNSVCYDSEKELLLFGGKDTMINGVPLFATSGED-PLY--TLIGH----QGNVCSLSFQD--GVVISGSW------DKT 125 (313)
T ss_dssp CEEEEEEETTTTEEEEEETTSCEEEEETTCCTTSC-C-C--EECCC----SSCEEEEEEET--TEEEEEET------TSE
T ss_pred cEEEEEECCCCCEEEEecCCCeEEEEEeeecCCCC-ccc--chhhc----ccCEEEEEecC--CEEEEEeC------CCC
Confidence 55678999999988888778999888866543100 011 12111 12456778753 45555543 356
Q ss_pred EEEEECCCCcEEEEEecCCCCCCCCCccceEECC-CCcEEEEeCCCCeEEEEcCCCceEEEecCCCCCCcccccCccccC
Q 020019 126 VAAYDLSTWNRLFLTQLSGPSDGKSCADDVTVDA-EGNAYVTDVTGSKIWKVGVKGEFLSIISSPLFTPKEWYKNLVGLN 204 (332)
Q Consensus 126 l~~~d~~~g~~~~~~~l~~~~~~~~~~ndiavd~-dG~lyvtd~~~~~I~~v~~~g~~~~~~~~~~~~~p~~~~~~~~~n 204 (332)
+..|| .++....... .......+++.+ +++.+++-...+.|..++.. +........ ......
T Consensus 126 i~~~d--~~~~~~~~~~-----~~~~v~~~~~~~~~~~~l~~~~~d~~i~i~d~~-~~~~~~~~~---------~~~~i~ 188 (313)
T 3odt_A 126 AKVWK--EGSLVYNLQA-----HNASVWDAKVVSFSENKFLTASADKTIKLWQND-KVIKTFSGI---------HNDVVR 188 (313)
T ss_dssp EEEEE--TTEEEEEEEC-----CSSCEEEEEEEETTTTEEEEEETTSCEEEEETT-EEEEEECSS---------CSSCEE
T ss_pred EEEEc--CCcEEEeccc-----CCCceeEEEEccCCCCEEEEEECCCCEEEEecC-ceEEEEecc---------CcccEE
Confidence 88899 3444443332 124456677777 77888877788888888844 333222211 113457
Q ss_pred eEEEccCceEEEEeCCCCeEEEEeCCCCCCccceeEEEEecCCCCCCCCeEEEeCCCeEEEEeCCc-eEEEEcCCCceEE
Q 020019 205 GIVYHPDGFLIVIHTFSGNLFKIDIVDGVGEGEEIKLIRVAGGPLSFGDGLELLSPTKLVVAGNPS-ARLVESSDGWETA 283 (332)
Q Consensus 205 Gi~~~~dG~Lyva~~~~~~i~~id~~~~~~~~~~~~~v~~~g~~~~~pdGi~~~~dG~l~va~~~~-~~~v~~~dg~~~~ 283 (332)
.+++++++. +++-...+.|..+++.+++ .+..+.. .......+++.++|.|+.+...+ .++....++ +
T Consensus 189 ~~~~~~~~~-~~~~~~dg~i~i~d~~~~~----~~~~~~~---~~~~i~~~~~~~~~~l~~~~~dg~v~iwd~~~~-~-- 257 (313)
T 3odt_A 189 HLAVVDDGH-FISCSNDGLIKLVDMHTGD----VLRTYEG---HESFVYCIKLLPNGDIVSCGEDRTVRIWSKENG-S-- 257 (313)
T ss_dssp EEEEEETTE-EEEEETTSEEEEEETTTCC----EEEEEEC---CSSCEEEEEECTTSCEEEEETTSEEEEECTTTC-C--
T ss_pred EEEEcCCCe-EEEccCCCeEEEEECCchh----hhhhhhc---CCceEEEEEEecCCCEEEEecCCEEEEEECCCC-c--
Confidence 899999998 4455567889999998762 4444442 22456789999999877766543 343344555 2
Q ss_pred EEEeeecCCCcccceEEEE-ECCeEEE
Q 020019 284 AVVAKFSGPVHRLATAATV-KDGRVYL 309 (332)
Q Consensus 284 ~~~~~~~~~~~~~pt~va~-~~g~lyv 309 (332)
....+... ....+++++ .++++.+
T Consensus 258 -~~~~~~~~-~~~i~~~~~~~~~~~~~ 282 (313)
T 3odt_A 258 -LKQVITLP-AISIWSVDCMSNGDIIV 282 (313)
T ss_dssp -EEEEEECS-SSCEEEEEECTTSCEEE
T ss_pred -eeEEEecc-CceEEEEEEccCCCEEE
Confidence 22222221 123356666 4555443
|
| >3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp} | Back alignment and structure |
|---|
Probab=98.36 E-value=7.7e-05 Score=68.38 Aligned_cols=182 Identities=14% Similarity=0.165 Sum_probs=105.2
Q ss_pred cceEEcCCCCEEEEE-ecCC--eEEEEECCCCCCCccceeeeEEecccCcCCCccceEEEeCCCCeEEEEEeCcCCCccc
Q 020019 48 ECAKWDDSGRRFIVS-FLDG--GIGQVAVPDDYPPGTVLEEVTLVKDLELTGNGSLGLVLDHPRNRLLVVAADVFGNKYS 124 (332)
Q Consensus 48 egia~d~~g~~~~~~-~~~g--~I~~vd~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~vd~~~g~l~v~~~~~~~~~~~ 124 (332)
..++++|||+.++.. ..++ .|+.++..+++. . .+...+. ....+.++.|+..+|+++.. ..
T Consensus 39 ~~~~~SpDg~~l~~~~~~~g~~~l~~~d~~~g~~-----~--~lt~~~~---~~~~~~~~spdg~~l~~~~~------~~ 102 (388)
T 3pe7_A 39 YQKCFTRDGSKLLFGGAFDGPWNYYLLDLNTQVA-----T--QLTEGRG---DNTFGGFLSPDDDALFYVKD------GR 102 (388)
T ss_dssp TSCCBCTTSCEEEEEECTTSSCEEEEEETTTCEE-----E--ECCCSSC---BCSSSCEECTTSSEEEEEET------TT
T ss_pred cCccCCCCCCEEEEEEcCCCCceEEEEeCCCCce-----E--EeeeCCC---CCccceEEcCCCCEEEEEeC------CC
Confidence 348899999855444 3345 599999887652 1 2221111 12336789997445666653 24
Q ss_pred eEEEEECCCCcEEEEEecCCCCCCCCCccceEECCCCcEEEE----------------------eCCCCeEEEEcCC-Cc
Q 020019 125 AVAAYDLSTWNRLFLTQLSGPSDGKSCADDVTVDAEGNAYVT----------------------DVTGSKIWKVGVK-GE 181 (332)
Q Consensus 125 ~l~~~d~~~g~~~~~~~l~~~~~~~~~~ndiavd~dG~lyvt----------------------d~~~~~I~~v~~~-g~ 181 (332)
.|+++|+++++.......+ . ........+++++|..++. ......|++++.+ |+
T Consensus 103 ~l~~~d~~~g~~~~~~~~~--~-~~~~~~~~~~~~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~g~ 179 (388)
T 3pe7_A 103 NLMRVDLATLEENVVYQVP--A-EWVGYGTWVANSDCTKLVGIEIRREDWVPLTDWKKFHEFYFTKPCCRLMRVDLKTGE 179 (388)
T ss_dssp EEEEEETTTCCEEEEEECC--T-TEEEEEEEEECTTSSEEEEEEEEGGGCCCCCSHHHHHHHGGGCCCEEEEEEETTTCC
T ss_pred eEEEEECCCCcceeeeech--h-hcccccceeECCCCCeeccccccCcccccccccchhhhhhccCCcceEEEEECCCCc
Confidence 6899999998876655552 1 1111122345888876653 1134679999976 44
Q ss_pred eEEEecCCCCCCcccccCccccCeEEEcc-Cc-eEEEEeCC-----CCeEEEEeCCCCCCccceeEEEEecCCCCCCCCe
Q 020019 182 FLSIISSPLFTPKEWYKNLVGLNGIVYHP-DG-FLIVIHTF-----SGNLFKIDIVDGVGEGEEIKLIRVAGGPLSFGDG 254 (332)
Q Consensus 182 ~~~~~~~~~~~~p~~~~~~~~~nGi~~~~-dG-~Lyva~~~-----~~~i~~id~~~~~~~~~~~~~v~~~g~~~~~pdG 254 (332)
...+.... .....++++| || .|+++... ..+|+.++++++ ..+.+... ........
T Consensus 180 ~~~l~~~~-----------~~~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~~-----~~~~l~~~-~~~~~~~~ 242 (388)
T 3pe7_A 180 STVILQEN-----------QWLGHPIYRPYDDSTVAFCHEGPHDLVDARMWLINEDGT-----NMRKVKTH-AEGESCTH 242 (388)
T ss_dssp EEEEEEES-----------SCEEEEEEETTEEEEEEEEECSCTTTSSCSEEEEETTSC-----CCEESCCC-CTTEEEEE
T ss_pred eEEeecCC-----------ccccccEECCCCCCEEEEEEecCCCCCcceEEEEeCCCC-----ceEEeeeC-CCCccccc
Confidence 44433221 1246789999 99 66554443 448999998865 23222211 10011235
Q ss_pred EEEeCCCe-EEE
Q 020019 255 LELLSPTK-LVV 265 (332)
Q Consensus 255 i~~~~dG~-l~v 265 (332)
.++.|||+ |++
T Consensus 243 ~~~spdg~~l~~ 254 (388)
T 3pe7_A 243 EFWVPDGSALVY 254 (388)
T ss_dssp EEECTTSSCEEE
T ss_pred ceECCCCCEEEE
Confidence 67889987 533
|
| >2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.36 E-value=0.00021 Score=67.41 Aligned_cols=160 Identities=9% Similarity=0.021 Sum_probs=96.8
Q ss_pred ccceEEEeCCCCeE-EEEEeCcCCCccceEEEEECC--CCcEEEEEecCCCCCCCCCccceEECCCCcEEEEeCCCCeEE
Q 020019 98 GSLGLVLDHPRNRL-LVVAADVFGNKYSAVAAYDLS--TWNRLFLTQLSGPSDGKSCADDVTVDAEGNAYVTDVTGSKIW 174 (332)
Q Consensus 98 ~~~gi~vd~~~g~l-~v~~~~~~~~~~~~l~~~d~~--~g~~~~~~~l~~~~~~~~~~ndiavd~dG~lyvtd~~~~~I~ 174 (332)
.+.+++++++ ++. +++.. ..+.+.+||.+ +++....+... .....+..+++.|+|+.+++-...+.|+
T Consensus 104 ~v~~~~~s~d-~~~l~~~~~-----~dg~v~iwd~~~~~~~~~~~~~~~---~~~~~v~~~~~sp~~~~l~~~~~~g~v~ 174 (450)
T 2vdu_B 104 YIRNLRLTSD-ESRLIACAD-----SDKSLLVFDVDKTSKNVLKLRKRF---CFSKRPNAISIAEDDTTVIIADKFGDVY 174 (450)
T ss_dssp CEEEEEECTT-SSEEEEEEG-----GGTEEEEEEECSSSSSCEEEEEEE---ECSSCEEEEEECTTSSEEEEEETTSEEE
T ss_pred ceEEEEEcCC-CCEEEEEEC-----CCCeEEEEECcCCCCceeeeeecc---cCCCCceEEEEcCCCCEEEEEeCCCcEE
Confidence 3678999997 654 45543 24578899988 77665544321 0124577899999998666656688898
Q ss_pred EEcCC-CceEEEecCCCCCCcccccCccccCeEEEccC---ceEEEEeCCCCeEEEEeCCCCCCccceeEEEEecCCCCC
Q 020019 175 KVGVK-GEFLSIISSPLFTPKEWYKNLVGLNGIVYHPD---GFLIVIHTFSGNLFKIDIVDGVGEGEEIKLIRVAGGPLS 250 (332)
Q Consensus 175 ~v~~~-g~~~~~~~~~~~~~p~~~~~~~~~nGi~~~~d---G~Lyva~~~~~~i~~id~~~~~~~~~~~~~v~~~g~~~~ 250 (332)
.++.. ++..... ...+. ......+.++|+|+ +.++++-...+.|..+++.+++ .+..+. . ....
T Consensus 175 ~~~~~~~~~~~~~-~~~~~-----~h~~~v~~~~~sp~~~~~~~l~s~~~d~~i~vwd~~~~~----~~~~~~-~-~h~~ 242 (450)
T 2vdu_B 175 SIDINSIPEEKFT-QEPIL-----GHVSMLTDVHLIKDSDGHQFIITSDRDEHIKISHYPQCF----IVDKWL-F-GHKH 242 (450)
T ss_dssp EEETTSCCCSSCC-CCCSE-----ECSSCEEEEEEEECTTSCEEEEEEETTSCEEEEEESCTT----CEEEEC-C-CCSS
T ss_pred EEecCCccccccc-ceeee-----cccCceEEEEEcCCCCCCcEEEEEcCCCcEEEEECCCCc----eeeeee-c-CCCC
Confidence 88864 2211000 00110 01234678999999 8555555567788888888662 333322 2 1234
Q ss_pred CCCeEEEeCCCeEEEEeC--CceEEEEcCCC
Q 020019 251 FGDGLELLSPTKLVVAGN--PSARLVESSDG 279 (332)
Q Consensus 251 ~pdGi~~~~dG~l~va~~--~~~~~v~~~dg 279 (332)
....+++. +|+++++.. ...++.....+
T Consensus 243 ~v~~~~~s-d~~~l~s~~~d~~v~vwd~~~~ 272 (450)
T 2vdu_B 243 FVSSICCG-KDYLLLSAGGDDKIFAWDWKTG 272 (450)
T ss_dssp CEEEEEEC-STTEEEEEESSSEEEEEETTTC
T ss_pred ceEEEEEC-CCCEEEEEeCCCeEEEEECCCC
Confidence 56789999 888777753 23344455566
|
| >3s25_A Hypothetical 7-bladed beta-propeller-like protein; structural genomics, joint center F structural genomics, JCSG; 1.88A {Eubacterium rectale} | Back alignment and structure |
|---|
Probab=98.36 E-value=8.1e-05 Score=67.21 Aligned_cols=182 Identities=10% Similarity=0.100 Sum_probs=107.8
Q ss_pred cceEEcCCCCEEEEE-ecCCeEEEEECCCCCCCccceeeeEEecccCcCCCccceEEEeCCCCeEEEEEeCcCC------
Q 020019 48 ECAKWDDSGRRFIVS-FLDGGIGQVAVPDDYPPGTVLEEVTLVKDLELTGNGSLGLVLDHPRNRLLVVAADVFG------ 120 (332)
Q Consensus 48 egia~d~~g~~~~~~-~~~g~I~~vd~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~vd~~~g~l~v~~~~~~~------ 120 (332)
.|...-.++.+||.+ ...++|++++.++... +.+.+ + .+.-|.++. +.||.+.....+
T Consensus 18 ~g~~~~~g~~iy~~n~~d~~~ly~~~~dg~~~--------~~l~~-~----~~~~i~~~g--~~Iyy~~~~~~~~~~~~~ 82 (302)
T 3s25_A 18 AGLFCESDGEVFFSNTNDNGRLYAMNIDGSNI--------HKLSN-D----TAMYINADK--NYVYYVRNNNQKITSQTF 82 (302)
T ss_dssp TTCEEEETTEEEEEEGGGTTEEEEEETTSCSC--------EEEEE-E----EEEEEEECS--SEEEEEEECC------CC
T ss_pred ceEEEEeCCEEEEEeCCCCceEEEEcCCCCCC--------EEccC-C----ceeeEEEcC--CEEEEEECCCCcccccce
Confidence 445554555677776 4578999999875542 22321 1 344565553 788888753210
Q ss_pred --CccceEEEEECCCCcEEEEEecCCCCCCCCCccceEECCCC-cEEEEe---CCCCeEEEEcCCCceEEEecCCCCCCc
Q 020019 121 --NKYSAVAAYDLSTWNRLFLTQLSGPSDGKSCADDVTVDAEG-NAYVTD---VTGSKIWKVGVKGEFLSIISSPLFTPK 194 (332)
Q Consensus 121 --~~~~~l~~~d~~~g~~~~~~~l~~~~~~~~~~ndiavd~dG-~lyvtd---~~~~~I~~v~~~g~~~~~~~~~~~~~p 194 (332)
.....|++++++.++....... .. .++.++| .||+++ .....|++++.+|+..+.+....
T Consensus 83 ~~~n~~~Iy~i~~dg~~~~~l~~~--------~~--~~~s~~g~~Iy~~~~~~~~~~~Iy~~~~dGs~~~~lt~~~---- 148 (302)
T 3s25_A 83 FSYDRNSLCRIKRNGHGSTVLDPD--------PC--IYASLIGNYIYYLHYDTQTATSLYRIRIDGEEKKKIKNHY---- 148 (302)
T ss_dssp SSCCSEEEEEEETTSCCCEEEECS--------CE--EEEEEETTEEEEEEESSSSCEEEEEEETTSCCCEEEESSC----
T ss_pred eccCCCeEEEEeCCCCcceEeecC--------Cc--cEEEEeCCEEEEEeecCCCCceEEEEECCCCCeEEEeCCC----
Confidence 0124688889887664433221 11 2444454 699998 67789999999986443332211
Q ss_pred ccccCccccCeEEEccCc-eEEEEeCCCCeEEEEeCCCCCCccceeEEEEecCCCCCCCCeEEEeC-CCeEEEEeCCc--
Q 020019 195 EWYKNLVGLNGIVYHPDG-FLIVIHTFSGNLFKIDIVDGVGEGEEIKLIRVAGGPLSFGDGLELLS-PTKLVVAGNPS-- 270 (332)
Q Consensus 195 ~~~~~~~~~nGi~~~~dG-~Lyva~~~~~~i~~id~~~~~~~~~~~~~v~~~g~~~~~pdGi~~~~-dG~l~va~~~~-- 270 (332)
.++++++| .||+++....+|++++++++ ..+.+ ..+ . ..+.+.| ++.||.++...
T Consensus 149 ----------~~~~~~~g~~iy~t~~g~~~Iy~~~l~g~-----~~~~l-~~~-~----~~~~~~P~g~~iy~t~~~~~~ 207 (302)
T 3s25_A 149 ----------LFTCNTSDRYFYYNNPKNGQLYRYDTASQ-----SEALF-YDC-N----CYKPVVLDDTNVYYMDVNRDN 207 (302)
T ss_dssp ----------CCCSEEETTEEEEECTTTCCEEEEETTTT-----EEEEE-ECS-C----EEEEEEEETTEEEEEEGGGTT
T ss_pred ----------ceEeeEECCEEEEEeCCCceEEEEECCCC-----CEEEE-eCC-C----ccceeeecCCEEEEEEcCCCc
Confidence 12456777 99999988889999999865 33434 221 1 1234554 47788886331
Q ss_pred eEEEEcCCC
Q 020019 271 ARLVESSDG 279 (332)
Q Consensus 271 ~~~v~~~dg 279 (332)
...+...||
T Consensus 208 ~I~~~~ldG 216 (302)
T 3s25_A 208 AIVHVNINN 216 (302)
T ss_dssp EEEEECSSS
T ss_pred EEEEEECCC
Confidence 222344555
|
| >2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.35 E-value=7.6e-05 Score=68.84 Aligned_cols=201 Identities=9% Similarity=0.092 Sum_probs=123.8
Q ss_pred cccceEEcCC-CCEEEEEecCCeEEEEECCCCCCCccceeeeEEecccCcCCCccceEEEeCCCCeEEEEEeCcCCCccc
Q 020019 46 FRECAKWDDS-GRRFIVSFLDGGIGQVAVPDDYPPGTVLEEVTLVKDLELTGNGSLGLVLDHPRNRLLVVAADVFGNKYS 124 (332)
Q Consensus 46 ~pegia~d~~-g~~~~~~~~~g~I~~vd~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~vd~~~g~l~v~~~~~~~~~~~ 124 (332)
....++++++ ++++++...++.|..++..+++................ .......+++.++.+.++++... .+
T Consensus 115 ~v~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~-~~~~v~~~~~~~~~~~~l~~~~~-----dg 188 (416)
T 2pm9_A 115 SVKTVKFNAKQDNVLASGGNNGEIFIWDMNKCTESPSNYTPLTPGQSMS-SVDEVISLAWNQSLAHVFASAGS-----SN 188 (416)
T ss_dssp CCCEEEECSSSTTBEEEECSSSCEEBCBTTTTSSCTTTCCCBCCCCSCC-SSCCCCEEEECSSCTTEEEEESS-----SS
T ss_pred ceEEEEEcCCCCCEEEEEcCCCeEEEEECCCCccccccccccccccccC-CCCCeeEEEeCCCCCcEEEEEcC-----CC
Confidence 4567899998 77777777789999999876541000000001100000 11256889999963555555432 45
Q ss_pred eEEEEECCCCcEEEEEecCCCCCC-CCCccceEECCCC-cEEEEeCCCC---eEEEEcCCC--ceEEEecCCCCCCcccc
Q 020019 125 AVAAYDLSTWNRLFLTQLSGPSDG-KSCADDVTVDAEG-NAYVTDVTGS---KIWKVGVKG--EFLSIISSPLFTPKEWY 197 (332)
Q Consensus 125 ~l~~~d~~~g~~~~~~~l~~~~~~-~~~~ndiavd~dG-~lyvtd~~~~---~I~~v~~~g--~~~~~~~~~~~~~p~~~ 197 (332)
.|..||.++++.........+..+ ....+.+++.|+| +++++....+ .|..++... +....+..
T Consensus 189 ~v~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~~~~i~~~d~~~~~~~~~~~~~--------- 259 (416)
T 2pm9_A 189 FASIWDLKAKKEVIHLSYTSPNSGIKQQLSVVEWHPKNSTRVATATGSDNDPSILIWDLRNANTPLQTLNQ--------- 259 (416)
T ss_dssp CEEEEETTTTEEEEEECCCCCSSCCCCCEEEEEECSSCTTEEEEEECCSSSCCCCEEETTSTTSCSBCCCS---------
T ss_pred CEEEEECCCCCcceEEeccccccccCCceEEEEECCCCCCEEEEEECCCCCceEEEEeCCCCCCCcEEeec---------
Confidence 689999998877655544211101 3567889999997 5777766665 777777653 22111110
Q ss_pred cCccccCeEEEcc-CceEEEEeCCCCeEEEEeCCCCCCccceeEEEEecCCCCCCCCeEEEeCCC-eEEEEeC
Q 020019 198 KNLVGLNGIVYHP-DGFLIVIHTFSGNLFKIDIVDGVGEGEEIKLIRVAGGPLSFGDGLELLSPT-KLVVAGN 268 (332)
Q Consensus 198 ~~~~~~nGi~~~~-dG~Lyva~~~~~~i~~id~~~~~~~~~~~~~v~~~g~~~~~pdGi~~~~dG-~l~va~~ 268 (332)
........++++| ++.++++-...++|..+++.+++ .+..+.. .......+++.++| +++++..
T Consensus 260 ~~~~~v~~~~~s~~~~~~l~s~~~dg~v~~wd~~~~~----~~~~~~~---~~~~v~~~~~s~~~~~~l~s~~ 325 (416)
T 2pm9_A 260 GHQKGILSLDWCHQDEHLLLSSGRDNTVLLWNPESAE----QLSQFPA---RGNWCFKTKFAPEAPDLFACAS 325 (416)
T ss_dssp CCSSCEEEEEECSSCSSCEEEEESSSEEEEECSSSCC----EEEEEEC---SSSCCCCEEECTTCTTEEEECC
T ss_pred CccCceeEEEeCCCCCCeEEEEeCCCCEEEeeCCCCc----cceeecC---CCCceEEEEECCCCCCEEEEEe
Confidence 0123467999999 78555566668889999988762 4544442 22456789999988 6777753
|
| >2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia} | Back alignment and structure |
|---|
Probab=98.34 E-value=7.5e-05 Score=74.92 Aligned_cols=189 Identities=6% Similarity=0.069 Sum_probs=110.8
Q ss_pred ccceEEcCCCCEEEEE-ecCC--------------------------------eEEEEECCC-CCCCccceeeeEEeccc
Q 020019 47 RECAKWDDSGRRFIVS-FLDG--------------------------------GIGQVAVPD-DYPPGTVLEEVTLVKDL 92 (332)
Q Consensus 47 pegia~d~~g~~~~~~-~~~g--------------------------------~I~~vd~~~-~~~~~~~~~~~~~~~~~ 92 (332)
+.+++|+|||+.++.. ...+ +|+.++..+ ++. . .+. .+
T Consensus 211 ~~~~~~SpDg~~l~~~~~d~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~~~~l~~~d~~~~~~~-----~--~~~-~~ 282 (741)
T 2ecf_A 211 HTGYWWAPDDSAIAYARIDESPVPVQKRYEVYADRTDVIEQRYPAAGDANVQVKLGVISPAEQAQT-----Q--WID-LG 282 (741)
T ss_dssp CCSEEECTTSSCEEEEEEECTTSCEEEEEEECSSCEEEEEEECCBTTSCCCEEEEEEECSSTTCCC-----E--EEC-CC
T ss_pred ccceEECCCCCEEEEEEEcCCCCceEecCCCCCCcccceEeecCCCCCCCCeeEEEEEECCCCCce-----E--Eec-CC
Confidence 4679999999865544 3221 788888876 652 1 221 11
Q ss_pred CcCCCccceEEEeCCCCeEEEEEeCcCCCccceEEEEECCCCcEEEEEecCCCCCCCCCccceEECCCCcEEEEeCCC--
Q 020019 93 ELTGNGSLGLVLDHPRNRLLVVAADVFGNKYSAVAAYDLSTWNRLFLTQLSGPSDGKSCADDVTVDAEGNAYVTDVTG-- 170 (332)
Q Consensus 93 ~~~~~~~~gi~vd~~~g~l~v~~~~~~~~~~~~l~~~d~~~g~~~~~~~l~~~~~~~~~~ndiavd~dG~lyvtd~~~-- 170 (332)
.........+++ ++...|+++..+.. .....|+.||.++++........... -....+.+++.|||+++++....
T Consensus 283 ~~~~~~~~~~~~-pDg~~l~~~~~~~~-~~~~~i~~~d~~~g~~~~~~~~~~~~-~~~~~~~~~~spdg~~~~~~~~~g~ 359 (741)
T 2ecf_A 283 KEQDIYLARVNW-RDPQHLSFQRQSRD-QKKLDLVEVTLASNQQRVLAHETSPT-WVPLHNSLRFLDDGSILWSSERTGF 359 (741)
T ss_dssp SCSSEEEEEEEE-EETTEEEEEEEETT-SSEEEEEEEETTTCCEEEEEEEECSS-CCCCCSCCEECTTSCEEEEECTTSS
T ss_pred CCcceEEEEEEe-CCCCEEEEEEeccc-CCeEEEEEEECCCCceEEEEEcCCCC-cCCcCCceEECCCCeEEEEecCCCc
Confidence 001124567888 87344555543211 13457999999998876554431100 00134679999999876665444
Q ss_pred CeEEEEcCCCceEEEecCCCCCCcccccCccccCeE-EEccCc-eEEEEeCCC----CeEEEEeCCCCCCccceeEEEEe
Q 020019 171 SKIWKVGVKGEFLSIISSPLFTPKEWYKNLVGLNGI-VYHPDG-FLIVIHTFS----GNLFKIDIVDGVGEGEEIKLIRV 244 (332)
Q Consensus 171 ~~I~~v~~~g~~~~~~~~~~~~~p~~~~~~~~~nGi-~~~~dG-~Lyva~~~~----~~i~~id~~~~~~~~~~~~~v~~ 244 (332)
..||.++.+|+ ...+.... .....+ +|++|| .||++.... .+||+++.++. ..+.+..
T Consensus 360 ~~l~~~~~~~~-~~~l~~~~----------~~v~~~~~~s~dg~~l~~~~~~~~~~~~~l~~~~~~g~-----~~~~l~~ 423 (741)
T 2ecf_A 360 QHLYRIDSKGK-AAALTHGN----------WSVDELLAVDEKAGLAYFRAGIESARESQIYAVPLQGG-----QPQRLSK 423 (741)
T ss_dssp CEEEEECSSSC-EEESCCSS----------SCEEEEEEEETTTTEEEEEECSSCTTCBEEEEEETTCC-----CCEECCC
T ss_pred cEEEEEcCCCC-eeeeeecc----------eEEEeEeEEeCCCCEEEEEEeCCCCceEEEEEEEcCCC-----Ceeeccc
Confidence 47999998877 43332111 122355 599999 787766543 36888887643 2332321
Q ss_pred cCCCCCCCCeEEEeCCCeEEEE
Q 020019 245 AGGPLSFGDGLELLSPTKLVVA 266 (332)
Q Consensus 245 ~g~~~~~pdGi~~~~dG~l~va 266 (332)
......+++++||+.++.
T Consensus 424 ----~~~~~~~~~spdg~~l~~ 441 (741)
T 2ecf_A 424 ----APGMHSASFARNASVYVD 441 (741)
T ss_dssp ----SCSEEEEEECTTSSEEEE
T ss_pred ----CCCceEEEECCCCCEEEE
Confidence 122346788999886555
|
| >3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B* | Back alignment and structure |
|---|
Probab=98.34 E-value=0.00044 Score=63.24 Aligned_cols=157 Identities=10% Similarity=0.111 Sum_probs=102.8
Q ss_pred cccceEEcC-CCCEEEEEecCCeEEEEECCCCCCCccceeeeEEecccCcCCCccceEEEeCCCCeEEEEEeCcCCCccc
Q 020019 46 FRECAKWDD-SGRRFIVSFLDGGIGQVAVPDDYPPGTVLEEVTLVKDLELTGNGSLGLVLDHPRNRLLVVAADVFGNKYS 124 (332)
Q Consensus 46 ~pegia~d~-~g~~~~~~~~~g~I~~vd~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~vd~~~g~l~v~~~~~~~~~~~ 124 (332)
...++++.+ +++.+++...++.|..++..+.. .. .+..... .......+++.++ ++.+++.. ..+
T Consensus 120 ~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~-----~~--~~~~~~~-~~~~v~~~~~~~~-~~~l~~~~-----~d~ 185 (383)
T 3ei3_B 120 AITGMKFNQFNTNQLFVSSIRGATTLRDFSGSV-----IQ--VFAKTDS-WDYWYCCVDVSVS-RQMLATGD-----STG 185 (383)
T ss_dssp BEEEEEEETTEEEEEEEEETTTEEEEEETTSCE-----EE--EEECCCC-SSCCEEEEEEETT-TTEEEEEE-----TTS
T ss_pred ceeEEEeCCCCCCEEEEEeCCCEEEEEECCCCc-----eE--EEeccCC-CCCCeEEEEECCC-CCEEEEEC-----CCC
Confidence 445789999 56777777778999999987532 11 2321111 1125788999997 55444433 246
Q ss_pred eEEEEECCCCcEEEEEecCCCCCCCCCccceEECCCCc-EEEEeCCCCeEEEEcCC-----CceEEEecCCCCCCccccc
Q 020019 125 AVAAYDLSTWNRLFLTQLSGPSDGKSCADDVTVDAEGN-AYVTDVTGSKIWKVGVK-----GEFLSIISSPLFTPKEWYK 198 (332)
Q Consensus 125 ~l~~~d~~~g~~~~~~~l~~~~~~~~~~ndiavd~dG~-lyvtd~~~~~I~~v~~~-----g~~~~~~~~~~~~~p~~~~ 198 (332)
.+..||.+ ++......- .......+++.|++. ++++.+..+.|..+|.. ++.......
T Consensus 186 ~i~i~d~~-~~~~~~~~~-----h~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~---------- 249 (383)
T 3ei3_B 186 RLLLLGLD-GHEIFKEKL-----HKAKVTHAEFNPRCDWLMATSSVDATVKLWDLRNIKDKNSYIAEMPH---------- 249 (383)
T ss_dssp EEEEEETT-SCEEEEEEC-----SSSCEEEEEECSSCTTEEEEEETTSEEEEEEGGGCCSTTCEEEEEEC----------
T ss_pred CEEEEECC-CCEEEEecc-----CCCcEEEEEECCCCCCEEEEEeCCCEEEEEeCCCCCcccceEEEecC----------
Confidence 78999995 554433332 135677899999997 88888888888888865 233332221
Q ss_pred CccccCeEEEcc-CceEEEEeCCCCeEEEEeCCCCC
Q 020019 199 NLVGLNGIVYHP-DGFLIVIHTFSGNLFKIDIVDGV 233 (332)
Q Consensus 199 ~~~~~nGi~~~~-dG~Lyva~~~~~~i~~id~~~~~ 233 (332)
......++|+| +|.++++-...++|..+++.+++
T Consensus 250 -~~~v~~~~~s~~~~~~l~~~~~d~~i~iwd~~~~~ 284 (383)
T 3ei3_B 250 -EKPVNAAYFNPTDSTKLLTTDQRNEIRVYSSYDWS 284 (383)
T ss_dssp -SSCEEEEEECTTTSCEEEEEESSSEEEEEETTBTT
T ss_pred -CCceEEEEEcCCCCCEEEEEcCCCcEEEEECCCCc
Confidence 12457899999 99555555667889999988663
|
| >2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B | Back alignment and structure |
|---|
Probab=98.31 E-value=0.00015 Score=68.07 Aligned_cols=206 Identities=9% Similarity=0.016 Sum_probs=128.0
Q ss_pred EEEecCCccccceEEcCCCC-EEEEEecCCeEEEEECCCCCCCcccee-eeEEecccCcCCCccceEEEeCCCCeEEEEE
Q 020019 38 YHYHSSSFFRECAKWDDSGR-RFIVSFLDGGIGQVAVPDDYPPGTVLE-EVTLVKDLELTGNGSLGLVLDHPRNRLLVVA 115 (332)
Q Consensus 38 i~~~~~~~~pegia~d~~g~-~~~~~~~~g~I~~vd~~~~~~~~~~~~-~~~~~~~~~~~~~~~~gi~vd~~~g~l~v~~ 115 (332)
..+........+++|++++. ++++...+|.|..++...+........ ...+.. -...+..++++++++.++++.
T Consensus 175 ~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~----h~~~v~~v~~~p~~~~~l~s~ 250 (430)
T 2xyi_A 175 LRLRGHQKEGYGLSWNPNLNGYLLSASDDHTICLWDINATPKEHRVIDAKNIFTG----HTAVVEDVAWHLLHESLFGSV 250 (430)
T ss_dssp EEEECCSSCCCCEEECTTSTTEEEEECTTSCEEEEETTSCCBGGGEEECSEEECC----CSSCEEEEEECSSCTTEEEEE
T ss_pred EEecCCCCCeEEEEeCCCCCCeEEEEeCCCeEEEEeCCCCCCCCceeccceeecC----CCCCEeeeEEeCCCCCEEEEE
Confidence 34444444567899999988 777777789999999875321000000 001111 112578899998546666665
Q ss_pred eCcCCCccceEEEEECCCC---cEEEEEecCCCCCCCCCccceEECCCCc-EEEEeCCCCeEEEEcCCC--ceEEEecCC
Q 020019 116 ADVFGNKYSAVAAYDLSTW---NRLFLTQLSGPSDGKSCADDVTVDAEGN-AYVTDVTGSKIWKVGVKG--EFLSIISSP 189 (332)
Q Consensus 116 ~~~~~~~~~~l~~~d~~~g---~~~~~~~l~~~~~~~~~~ndiavd~dG~-lyvtd~~~~~I~~v~~~g--~~~~~~~~~ 189 (332)
.. .+.|.+||.+++ +....... ....++.+++.|++. ++++-...+.|..++... +....+..
T Consensus 251 ~~-----dg~i~i~d~~~~~~~~~~~~~~~-----~~~~v~~i~~~p~~~~~l~tg~~dg~v~vwd~~~~~~~~~~~~~- 319 (430)
T 2xyi_A 251 AD-----DQKLMIWDTRNNNTSKPSHTVDA-----HTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKLKLHSFES- 319 (430)
T ss_dssp ET-----TSEEEEEETTCSCSSSCSEEEEC-----CSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCTTSCSEEEEC-
T ss_pred eC-----CCeEEEEECCCCCCCcceeEeec-----CCCCeEEEEeCCCCCCEEEEEeCCCeEEEEeCCCCCCCeEEeec-
Confidence 42 467999999876 23322221 135678999999985 888888889998888653 22221111
Q ss_pred CCCCcccccCccccCeEEEccCc-eEEEEeCCCCeEEEEeCCCCCCc--------cceeEEEEecCCCCCCCCeEEEeCC
Q 020019 190 LFTPKEWYKNLVGLNGIVYHPDG-FLIVIHTFSGNLFKIDIVDGVGE--------GEEIKLIRVAGGPLSFGDGLELLSP 260 (332)
Q Consensus 190 ~~~~p~~~~~~~~~nGi~~~~dG-~Lyva~~~~~~i~~id~~~~~~~--------~~~~~~v~~~g~~~~~pdGi~~~~d 260 (332)
.......|+|+|++ .++++....++|..+++...... +......... .....+..+++.++
T Consensus 320 ---------h~~~v~~i~~sp~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~-~h~~~v~~~~~~p~ 389 (430)
T 2xyi_A 320 ---------HKDEIFQVQWSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHG-GHTAKISDFSWNPN 389 (430)
T ss_dssp ---------CSSCEEEEEECSSCTTEEEEEETTSCCEEEEGGGTTCCCCHHHHHHCCTTEEEECC-CCSSCEEEEEECSS
T ss_pred ---------CCCCEEEEEECCCCCCEEEEEeCCCcEEEEeCCCCccccCccccccCCcceEEEcC-CCCCCceEEEECCC
Confidence 11245789999999 78888888888888888752110 0001112222 23345788999999
Q ss_pred Ce-EEEEeC
Q 020019 261 TK-LVVAGN 268 (332)
Q Consensus 261 G~-l~va~~ 268 (332)
+. ++++..
T Consensus 390 ~~~~l~s~s 398 (430)
T 2xyi_A 390 EPWIICSVS 398 (430)
T ss_dssp STTEEEEEE
T ss_pred CCCEEEEEE
Confidence 88 666653
|
| >1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24 | Back alignment and structure |
|---|
Probab=98.31 E-value=8.8e-05 Score=74.11 Aligned_cols=160 Identities=12% Similarity=0.071 Sum_probs=92.0
Q ss_pred cccceEEcCCCCEEEEEecCCeEEEEECCCCCCCccceeeeEEecccCcCCCccceEEEeCCCCe-EEEEEeCcCC---C
Q 020019 46 FRECAKWDDSGRRFIVSFLDGGIGQVAVPDDYPPGTVLEEVTLVKDLELTGNGSLGLVLDHPRNR-LLVVAADVFG---N 121 (332)
Q Consensus 46 ~pegia~d~~g~~~~~~~~~g~I~~vd~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~vd~~~g~-l~v~~~~~~~---~ 121 (332)
.+..++|+++|+++++ ..+|.|+.++..+++. . .+..........+..++++|+ |+ |.++..+... .
T Consensus 18 ~~~~~~~spdg~~~~~-~~dg~i~~~d~~~g~~-----~--~~~~~~~~~~~~v~~~~~SpD-g~~l~~~~~~~~~~~~~ 88 (723)
T 1xfd_A 18 HDPEAKWISDTEFIYR-EQKGTVRLWNVETNTS-----T--VLIEGKKIESLRAIRYEISPD-REYALFSYNVEPIYQHS 88 (723)
T ss_dssp CCCCCCBSSSSCBCCC-CSSSCEEEBCGGGCCC-----E--EEECTTTTTTTTCSEEEECTT-SSEEEEEESCCCCSSSC
T ss_pred cccccEEcCCCcEEEE-eCCCCEEEEECCCCcE-----E--EEeccccccccccceEEECCC-CCEEEEEecCccceeec
Confidence 4678999999996554 4578999999887763 1 233221111013678999997 66 4444332110 1
Q ss_pred ccceEEEEECCCCcEEEEEecCCCCCCCCCccceEECCCCc-EEEEeCCCCeEEEEcCCC-ceEEEecCCCCCC-----c
Q 020019 122 KYSAVAAYDLSTWNRLFLTQLSGPSDGKSCADDVTVDAEGN-AYVTDVTGSKIWKVGVKG-EFLSIISSPLFTP-----K 194 (332)
Q Consensus 122 ~~~~l~~~d~~~g~~~~~~~l~~~~~~~~~~ndiavd~dG~-lyvtd~~~~~I~~v~~~g-~~~~~~~~~~~~~-----p 194 (332)
..+.+++||.++++.. .+............+++.|||+ |.++.. +.|+.++.++ +..++........ +
T Consensus 89 ~~~~i~~~d~~~~~~~---~l~~~~~~~~~~~~~~~SPdG~~la~~~~--~~i~~~~~~~g~~~~~~~~~~~~~~~~g~~ 163 (723)
T 1xfd_A 89 YTGYYVLSKIPHGDPQ---SLDPPEVSNAKLQYAGWGPKGQQLIFIFE--NNIYYCAHVGKQAIRVVSTGKEGVIYNGLS 163 (723)
T ss_dssp CCSEEEEEESSSCCCE---ECCCTTCCSCCCSBCCBCSSTTCEEEEET--TEEEEESSSSSCCEEEECCCBTTTEEEEEC
T ss_pred ceeeEEEEECCCCceE---eccCCccccccccccEECCCCCEEEEEEC--CeEEEEECCCCceEEEecCCCCCceECccc
Confidence 1367899999988763 2221111123467899999995 544432 6899999774 4444332211000 0
Q ss_pred cc---ccCccccCeEEEccCc-eEEEEeC
Q 020019 195 EW---YKNLVGLNGIVYHPDG-FLIVIHT 219 (332)
Q Consensus 195 ~~---~~~~~~~nGi~~~~dG-~Lyva~~ 219 (332)
.+ ...+....+++|+||| .|+++..
T Consensus 164 ~~v~~ee~~~~~~~~~~SpDg~~la~~~~ 192 (723)
T 1xfd_A 164 DWLYEEEILKTHIAHWWSPDGTRLAYAAI 192 (723)
T ss_dssp CHHHHHTTSSSSEEEEECTTSSEEEEEEE
T ss_pred ceeEEEEeccCcceEEECCCCCEEEEEEE
Confidence 00 0001123689999999 7777654
|
| >4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.31 E-value=0.00035 Score=63.81 Aligned_cols=198 Identities=9% Similarity=0.045 Sum_probs=119.8
Q ss_pred ccccceEEcC-CCCEEEEEecCCeEEEEECCCCCCCccceeeeEEec----ccCcCCCccceEEEeCCCCeEEEEEeCcC
Q 020019 45 FFRECAKWDD-SGRRFIVSFLDGGIGQVAVPDDYPPGTVLEEVTLVK----DLELTGNGSLGLVLDHPRNRLLVVAADVF 119 (332)
Q Consensus 45 ~~pegia~d~-~g~~~~~~~~~g~I~~vd~~~~~~~~~~~~~~~~~~----~~~~~~~~~~gi~vd~~~g~l~v~~~~~~ 119 (332)
.....+++++ +++++++...+|.|..++..+++....... ..... .+......+..+++.++++.++++...
T Consensus 44 ~~v~~~~~s~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~-- 120 (408)
T 4a11_B 44 GGINTLDIEPVEGRYMLSGGSDGVIVLYDLENSSRQSYYTC-KAVCSIGRDHPDVHRYSVETVQWYPHDTGMFTSSSF-- 120 (408)
T ss_dssp SCEEEEEECTTTCCEEEEEETTSCEEEEECCCCSSSSCEEE-CEEEEECTTCTTCCSSCEEEEEECTTCTTCEEEEET--
T ss_pred CcEEEEEEecCCCCEEEEEcCCCeEEEEECCCCcccceEec-cccccccccccccCCCcEEEEEEccCCCcEEEEEeC--
Confidence 3557799999 999888887789999999887653110000 00000 000011357889999843554544432
Q ss_pred CCccceEEEEECCCCcEEEEEecCCCCCCCCCccceEECC---CCcEEEEeCCCCeEEEEcCC-CceEEEecCCCCCCcc
Q 020019 120 GNKYSAVAAYDLSTWNRLFLTQLSGPSDGKSCADDVTVDA---EGNAYVTDVTGSKIWKVGVK-GEFLSIISSPLFTPKE 195 (332)
Q Consensus 120 ~~~~~~l~~~d~~~g~~~~~~~l~~~~~~~~~~ndiavd~---dG~lyvtd~~~~~I~~v~~~-g~~~~~~~~~~~~~p~ 195 (332)
.+.+..||.++++........ .....+.+.+ ++.++++-...+.|..++.. ++....+..
T Consensus 121 ---d~~i~iwd~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~------- 184 (408)
T 4a11_B 121 ---DKTLKVWDTNTLQTADVFNFE------ETVYSHHMSPVSTKHCLVAVGTRGPKVQLCDLKSGSCSHILQG------- 184 (408)
T ss_dssp ---TSEEEEEETTTTEEEEEEECS------SCEEEEEECSSCSSCCEEEEEESSSSEEEEESSSSCCCEEECC-------
T ss_pred ---CCeEEEeeCCCCccceeccCC------CceeeeEeecCCCCCcEEEEEcCCCeEEEEeCCCcceeeeecC-------
Confidence 357899999998877665542 2345566666 44577777778888888865 333222211
Q ss_pred cccCccccCeEEEccCc-eEEEEeCCCCeEEEEeCCCCCCccceeEEEEec------------CCCCCCCCeEEEeCCCe
Q 020019 196 WYKNLVGLNGIVYHPDG-FLIVIHTFSGNLFKIDIVDGVGEGEEIKLIRVA------------GGPLSFGDGLELLSPTK 262 (332)
Q Consensus 196 ~~~~~~~~nGi~~~~dG-~Lyva~~~~~~i~~id~~~~~~~~~~~~~v~~~------------g~~~~~pdGi~~~~dG~ 262 (332)
.......++++|++ +++++-...+.|..+++..+.. ....+... .........+++.++|+
T Consensus 185 ---~~~~v~~~~~~~~~~~ll~~~~~dg~i~i~d~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~ 258 (408)
T 4a11_B 185 ---HRQEILAVSWSPRYDYILATASADSRVKLWDVRRASG---CLITLDQHNGKKSQAVESANTAHNGKVNGLCFTSDGL 258 (408)
T ss_dssp ---CCSCEEEEEECSSCTTEEEEEETTSCEEEEETTCSSC---CSEECCTTTTCSCCCTTTSSCSCSSCEEEEEECTTSS
T ss_pred ---CCCcEEEEEECCCCCcEEEEEcCCCcEEEEECCCCCc---ccccccccccccceeeccccccccCceeEEEEcCCCC
Confidence 11235789999999 6777777788898898875521 22222100 01123456788888887
Q ss_pred EEEEe
Q 020019 263 LVVAG 267 (332)
Q Consensus 263 l~va~ 267 (332)
.+++.
T Consensus 259 ~l~~~ 263 (408)
T 4a11_B 259 HLLTV 263 (408)
T ss_dssp EEEEE
T ss_pred EEEEe
Confidence 66654
|
| >3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum} | Back alignment and structure |
|---|
Probab=98.30 E-value=0.00045 Score=63.67 Aligned_cols=199 Identities=12% Similarity=0.091 Sum_probs=122.8
Q ss_pred ccceEEcCCC-CEEEEEecCCeEEEEECCCCCCCccceeeeEEec-ccCcCCCccceEEEeCCCCeEEEEEeCcCCCccc
Q 020019 47 RECAKWDDSG-RRFIVSFLDGGIGQVAVPDDYPPGTVLEEVTLVK-DLELTGNGSLGLVLDHPRNRLLVVAADVFGNKYS 124 (332)
Q Consensus 47 pegia~d~~g-~~~~~~~~~g~I~~vd~~~~~~~~~~~~~~~~~~-~~~~~~~~~~gi~vd~~~g~l~v~~~~~~~~~~~ 124 (332)
...+.+.+++ ..+++...++.|..+|..+++. .. .+.. .+..-......+.+.+.++.++++... .+
T Consensus 160 v~~~~~~~~~~~~l~s~s~D~~i~~wd~~~~~~----~~--~~~~~~~~~h~~~v~~~~~~~~~~~~l~sgs~-----D~ 228 (380)
T 3iz6_a 160 ASSCQYVPDQETRLITGSGDQTCVLWDVTTGQR----IS--IFGSEFPSGHTADVLSLSINSLNANMFISGSC-----DT 228 (380)
T ss_dssp CCCCBCCSSSSSCEEEECTTSCEEEECTTTCCE----EE--EECCCSSSSCCSCEEEEEECSSSCCEEEEEET-----TS
T ss_pred eEEEEEecCCCCEEEEECCCCcEEEEEcCCCcE----EE--EeecccCCCCccCeEEEEeecCCCCEEEEEEC-----CC
Confidence 3456677764 4566667789999999887652 11 1211 011011245778887644666665442 45
Q ss_pred eEEEEECCC-CcEEEEEecCCCCCCCCCccceEECCCCcEEEEeCCCCeEEEEcCC-CceEEEecCCCCCCcccccCccc
Q 020019 125 AVAAYDLST-WNRLFLTQLSGPSDGKSCADDVTVDAEGNAYVTDVTGSKIWKVGVK-GEFLSIISSPLFTPKEWYKNLVG 202 (332)
Q Consensus 125 ~l~~~d~~~-g~~~~~~~l~~~~~~~~~~ndiavd~dG~lyvtd~~~~~I~~v~~~-g~~~~~~~~~~~~~p~~~~~~~~ 202 (332)
.+..||++. ++.... +.+ .....+.+++.|+|+.+++-+..+.|..+|.. ++....+........ .....
T Consensus 229 ~v~~wd~~~~~~~~~~--~~~---h~~~v~~v~~~p~~~~l~s~s~D~~i~lwd~~~~~~~~~~~~~~~~~~---~~~~~ 300 (380)
T 3iz6_a 229 TVRLWDLRITSRAVRT--YHG---HEGDINSVKFFPDGQRFGTGSDDGTCRLFDMRTGHQLQVYNREPDRND---NELPI 300 (380)
T ss_dssp CEEEEETTTTCCCCEE--ECC---CSSCCCEEEECTTSSEEEEECSSSCEEEEETTTTEEEEEECCCCSSSC---CSSCS
T ss_pred eEEEEECCCCCcceEE--ECC---cCCCeEEEEEecCCCeEEEEcCCCeEEEEECCCCcEEEEecccccccc---cccCc
Confidence 688999874 333322 211 12457889999999999999999999999876 454443322111000 01224
Q ss_pred cCeEEEccCceEEEEeCCCCeEEEEeCCCCCCccceeEEEEe-cCCCCCCCCeEEEeCCCeEEEEeC
Q 020019 203 LNGIVYHPDGFLIVIHTFSGNLFKIDIVDGVGEGEEIKLIRV-AGGPLSFGDGLELLSPTKLVVAGN 268 (332)
Q Consensus 203 ~nGi~~~~dG~Lyva~~~~~~i~~id~~~~~~~~~~~~~v~~-~g~~~~~pdGi~~~~dG~l~va~~ 268 (332)
...++|+++|.+.++-..++.|+.+|...++ .+..+.. ..........+++.++|+++++..
T Consensus 301 v~~~~~s~~g~~l~~g~~dg~i~vwd~~~~~----~~~~~~~~~~~h~~~v~~l~~s~dg~~l~sgs 363 (380)
T 3iz6_a 301 VTSVAFSISGRLLFAGYSNGDCYVWDTLLAE----MVLNLGTLQNSHEGRISCLGLSSDGSALCTGS 363 (380)
T ss_dssp CSEEEECSSSSEEEEECTTSCEEEEETTTCC----EEEEECCSCSSCCCCCCEEEECSSSSEEEEEC
T ss_pred eEEEEECCCCCEEEEEECCCCEEEEECCCCc----eEEEEecccCCCCCceEEEEECCCCCEEEEee
Confidence 6789999999666666778899999987662 3333321 111234567899999999888763
|
| >1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X | Back alignment and structure |
|---|
Probab=98.28 E-value=0.00021 Score=65.51 Aligned_cols=204 Identities=12% Similarity=0.076 Sum_probs=117.6
Q ss_pred cccceEEc----CCCCE-EEEEecCCeEEEEECCC------CCCCccceeeeEEec---ccCcCCCccceEEEeCCCCeE
Q 020019 46 FRECAKWD----DSGRR-FIVSFLDGGIGQVAVPD------DYPPGTVLEEVTLVK---DLELTGNGSLGLVLDHPRNRL 111 (332)
Q Consensus 46 ~pegia~d----~~g~~-~~~~~~~g~I~~vd~~~------~~~~~~~~~~~~~~~---~~~~~~~~~~gi~vd~~~g~l 111 (332)
....+++. ++++. +++...++.|..++..+ ++... ......+.. .+......+..++++++ + +
T Consensus 123 ~v~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~i~~~~~~~~-~-~ 199 (397)
T 1sq9_A 123 SFWALKWGASNDRLLSHRLVATDVKGTTYIWKFHPFADESNSLTLN-WSPTLELQGTVESPMTPSQFATSVDISER-G-L 199 (397)
T ss_dssp CEEEEEEECCC----CEEEEEEETTSCEEEEEEESSSSHHHHTTTC-CCCEEEEEEEECCSSSSCCCCCEEEECTT-S-E
T ss_pred cEEEEEEeeccCCCCceEEEEEeCCCcEEEEeCCccccccccceee-ccCcceeeeeeccccCCCCCceEEEECCC-c-e
Confidence 45678999 99998 77777789988888765 33210 000001210 00101125789999997 6 4
Q ss_pred EEEEeCcCCCccceEEEEECCCCcEEEEEecC-CCCCCCCCccceEECCCCcEEEEeCCC---CeEEEEcCC-CceEEEe
Q 020019 112 LVVAADVFGNKYSAVAAYDLSTWNRLFLTQLS-GPSDGKSCADDVTVDAEGNAYVTDVTG---SKIWKVGVK-GEFLSII 186 (332)
Q Consensus 112 ~v~~~~~~~~~~~~l~~~d~~~g~~~~~~~l~-~~~~~~~~~ndiavd~dG~lyvtd~~~---~~I~~v~~~-g~~~~~~ 186 (332)
+++.. ..+.+..||.++++....+... +..........++++++|+++++-... +.|..++.. ++....+
T Consensus 200 l~~~~-----~dg~i~i~d~~~~~~~~~~~~~~~h~~~~~~i~~i~~~~~~~~l~~~~~d~~~g~i~i~d~~~~~~~~~~ 274 (397)
T 1sq9_A 200 IATGF-----NNGTVQISELSTLRPLYNFESQHSMINNSNSIRSVKFSPQGSLLAIAHDSNSFGCITLYETEFGERIGSL 274 (397)
T ss_dssp EEEEC-----TTSEEEEEETTTTEEEEEEECCC---CCCCCEEEEEECSSTTEEEEEEEETTEEEEEEEETTTCCEEEEE
T ss_pred EEEEe-----CCCcEEEEECCCCceeEEEeccccccccCCccceEEECCCCCEEEEEecCCCCceEEEEECCCCccccee
Confidence 44433 2467999999988776554430 000003457789999999877776666 889999865 5544333
Q ss_pred cCCCCCC--c-ccccCccccCeEEEccCceEEEEeCCCCeEEEEeCCCCCCccceeEEEEecC---CC------------
Q 020019 187 SSPLFTP--K-EWYKNLVGLNGIVYHPDGFLIVIHTFSGNLFKIDIVDGVGEGEEIKLIRVAG---GP------------ 248 (332)
Q Consensus 187 ~~~~~~~--p-~~~~~~~~~nGi~~~~dG~Lyva~~~~~~i~~id~~~~~~~~~~~~~v~~~g---~~------------ 248 (332)
..+.... . ...........++++|+|.++++-...++|..+++.++ +.+..+.... ..
T Consensus 275 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~----~~~~~~~~~~~~~~~~~~~~~g~~~~~ 350 (397)
T 1sq9_A 275 SVPTHSSQASLGEFAHSSWVMSLSFNDSGETLCSAGWDGKLRFWDVKTK----ERITTLNMHCDDIEIEEDILAVDEHGD 350 (397)
T ss_dssp CBC--------CCBSBSSCEEEEEECSSSSEEEEEETTSEEEEEETTTT----EEEEEEECCGGGCSSGGGCCCBCTTSC
T ss_pred ccCcccccccccccccCCcEEEEEECCCCCEEEEEeCCCeEEEEEcCCC----ceeEEEecccCcccchhhhhccccccc
Confidence 2110000 0 00001234678999999955555567888999999876 2455454110 01
Q ss_pred ---CCCCCeEEEeCCC
Q 020019 249 ---LSFGDGLELLSPT 261 (332)
Q Consensus 249 ---~~~pdGi~~~~dG 261 (332)
......+++.++|
T Consensus 351 ~~~~~~v~~~~~~~~g 366 (397)
T 1sq9_A 351 SLAEPGVFDVKFLKKG 366 (397)
T ss_dssp BCSSCCEEEEEEECTT
T ss_pred cccCCceeEEEecccc
Confidence 2446688999997
|
| >3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A | Back alignment and structure |
|---|
Probab=98.27 E-value=0.00074 Score=61.91 Aligned_cols=221 Identities=14% Similarity=0.111 Sum_probs=117.1
Q ss_pred ceEEcCCCCEEEEEecCCeEEEEECCCCCCCccceeeeEEecccCcC-------CCc-cceEEEeCCCCeEEEEEeCcCC
Q 020019 49 CAKWDDSGRRFIVSFLDGGIGQVAVPDDYPPGTVLEEVTLVKDLELT-------GNG-SLGLVLDHPRNRLLVVAADVFG 120 (332)
Q Consensus 49 gia~d~~g~~~~~~~~~g~I~~vd~~~~~~~~~~~~~~~~~~~~~~~-------~~~-~~gi~vd~~~g~l~v~~~~~~~ 120 (332)
.++++ ++++|+.+ .++.|+.+|..+++. .|....... +.. ...+.++. +++|+...
T Consensus 48 ~p~v~-~~~v~~~~-~~g~v~a~d~~tG~~--------~W~~~~~~~~~~~~~~~~~~~~~~~~~~--~~v~v~~~---- 111 (376)
T 3q7m_A 48 HPALA-DNVVYAAD-RAGLVKALNADDGKE--------IWSVSLAEKDGWFSKEPALLSGGVTVSG--GHVYIGSE---- 111 (376)
T ss_dssp CCEEE-TTEEEEEC-TTSEEEEEETTTCCE--------EEEEECCC---CCSCCCCCEEEEEEEET--TEEEEEET----
T ss_pred ccEEE-CCEEEEEc-CCCeEEEEEccCCce--------eeeecCccccccccccCcccccCceEeC--CEEEEEcC----
Confidence 45554 35555544 468999999987762 233211100 111 23455553 89999875
Q ss_pred CccceEEEEECCCCcEEEEEecCCCCCCCCCccceEECCCCcEEEEeCCCCeEEEEcCC-CceEEEecCCCCCCcccccC
Q 020019 121 NKYSAVAAYDLSTWNRLFLTQLSGPSDGKSCADDVTVDAEGNAYVTDVTGSKIWKVGVK-GEFLSIISSPLFTPKEWYKN 199 (332)
Q Consensus 121 ~~~~~l~~~d~~~g~~~~~~~l~~~~~~~~~~ndiavd~dG~lyvtd~~~~~I~~v~~~-g~~~~~~~~~~~~~p~~~~~ 199 (332)
.+.|+.+|.++|+..+...+... .....+++ +|.+|+.. ..+.|+.+|+. |+......... +. ..
T Consensus 112 --~g~l~a~d~~tG~~~W~~~~~~~-----~~~~p~~~-~~~v~v~~-~~g~l~~~d~~tG~~~W~~~~~~---~~--~~ 177 (376)
T 3q7m_A 112 --KAQVYALNTSDGTVAWQTKVAGE-----ALSRPVVS-DGLVLIHT-SNGQLQALNEADGAVKWTVNLDM---PS--LS 177 (376)
T ss_dssp --TSEEEEEETTTCCEEEEEECSSC-----CCSCCEEE-TTEEEEEC-TTSEEEEEETTTCCEEEEEECCC---------
T ss_pred --CCEEEEEECCCCCEEEEEeCCCc-----eEcCCEEE-CCEEEEEc-CCCeEEEEECCCCcEEEEEeCCC---Cc--ee
Confidence 35799999999999887776321 11122333 56788864 46789999974 76543322111 00 00
Q ss_pred ccccCeEEEccCceEEEEeCCCCeEEEEeCCCCCCccceeEEEEecCCC-------CCCCCeEEEeCCCeEEEEeCC-ce
Q 020019 200 LVGLNGIVYHPDGFLIVIHTFSGNLFKIDIVDGVGEGEEIKLIRVAGGP-------LSFGDGLELLSPTKLVVAGNP-SA 271 (332)
Q Consensus 200 ~~~~nGi~~~~dG~Lyva~~~~~~i~~id~~~~~~~~~~~~~v~~~g~~-------~~~pdGi~~~~dG~l~va~~~-~~ 271 (332)
.......+++ ++.+|+. ..++.|+.+++.+++ ..-........ +....+..+..++.+|+.... ..
T Consensus 178 ~~~~~~~~~~-~~~v~~g-~~~g~l~~~d~~tG~----~~w~~~~~~~~~~~~~~~~~~~~~~p~~~~~~v~~~~~~g~l 251 (376)
T 3q7m_A 178 LRGESAPTTA-FGAAVVG-GDNGRVSAVLMEQGQ----MIWQQRISQATGSTEIDRLSDVDTTPVVVNGVVFALAYNGNL 251 (376)
T ss_dssp -CCCCCCEEE-TTEEEEC-CTTTEEEEEETTTCC----EEEEEECCC-----------CCCCCCEEETTEEEEECTTSCE
T ss_pred ecCCCCcEEE-CCEEEEE-cCCCEEEEEECCCCc----EEEEEecccCCCCcccccccccCCCcEEECCEEEEEecCcEE
Confidence 0111223343 5688886 346789999998773 23223222100 000111122246899998743 34
Q ss_pred EEEEcCCCceEEEEEeeecCCCcccceEEEEECCeEEEEEe
Q 020019 272 RLVESSDGWETAAVVAKFSGPVHRLATAATVKDGRVYLNHM 312 (332)
Q Consensus 272 ~~v~~~dg~~~~~~~~~~~~~~~~~pt~va~~~g~lyv~~~ 312 (332)
..+...+| + +.-... ...+.++...+++||+...
T Consensus 252 ~~~d~~tG-~---~~w~~~---~~~~~~~~~~~~~l~~~~~ 285 (376)
T 3q7m_A 252 TALDLRSG-Q---IMWKRE---LGSVNDFIVDGNRIYLVDQ 285 (376)
T ss_dssp EEEETTTC-C---EEEEEC---CCCEEEEEEETTEEEEEET
T ss_pred EEEECCCC-c---EEeecc---CCCCCCceEECCEEEEEcC
Confidence 44555667 2 221111 1123445557888888543
|
| >2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A* | Back alignment and structure |
|---|
Probab=98.25 E-value=0.0015 Score=64.02 Aligned_cols=202 Identities=14% Similarity=0.070 Sum_probs=107.4
Q ss_pred eEEEeCCCCeEEEEEeCcC--------CCc--cceEEEEECCCCcEEEEEecCCCCC-CCCCccc-eEEC--CCC---cE
Q 020019 101 GLVLDHPRNRLLVVAADVF--------GNK--YSAVAAYDLSTWNRLFLTQLSGPSD-GKSCADD-VTVD--AEG---NA 163 (332)
Q Consensus 101 gi~vd~~~g~l~v~~~~~~--------~~~--~~~l~~~d~~~g~~~~~~~l~~~~~-~~~~~nd-iavd--~dG---~l 163 (332)
.+++|++.+.+|+...... ... .+.|+.+|+++|+..+.++...... .....+. +.++ .+| .+
T Consensus 239 ~~a~d~~~g~vy~~~g~~~~~~~~~~~gd~~y~~~v~Ald~~tG~~~W~~~~~~~d~~d~~~~~~p~l~~~~~~G~~~~~ 318 (571)
T 2ad6_A 239 WYAYDPKLNLFYYGSGNPAPWNETMRPGDNKWTMTIWGRDLDTGMAKWGYQKTPHDEWDFAGVNQMVLTDQPVNGKMTPL 318 (571)
T ss_dssp CCEEETTTTEEEEECCCCSCSCGGGSCSCCTTTTEEEEEETTTCCEEEEEESSTTCSSCCCCCCCCEEEEEEETTEEEEE
T ss_pred eEEEcCCCCeEEEECCCCccccCCccCCCceeEEEEEEEecCCCcEEEEecCCCCcccccccCCCCEEEecccCCcEEEE
Confidence 4788987799999864210 000 1358999999999998887632100 0011122 2233 256 35
Q ss_pred EEEeCCCCeEEEEcCC-CceEEEecCCC-----------CCCccc---------------ccCcc---ccCeEEEccCc-
Q 020019 164 YVTDVTGSKIWKVGVK-GEFLSIISSPL-----------FTPKEW---------------YKNLV---GLNGIVYHPDG- 212 (332)
Q Consensus 164 yvtd~~~~~I~~v~~~-g~~~~~~~~~~-----------~~~p~~---------------~~~~~---~~nGi~~~~dG- 212 (332)
++.-..+|.++.+|.. |+.+....... ...|.. .+... .=.+++++|+.
T Consensus 319 v~~~~~~G~l~~lD~~tG~~~w~~~~~~~~~w~~~~d~~~g~p~~~~~~~~~~~~~~~~~~P~~~Gg~~w~~~a~dp~~g 398 (571)
T 2ad6_A 319 LSHIDRNGILYTLNRENGNLIVAEKVDPAVNVFKKVDLKTGTPVRDPEFATRMDHKGTNICPSAMGFHNQGVDSYDPESR 398 (571)
T ss_dssp EEEECTTSEEEEEETTTCCEEEEEESSTTCCSEEEECTTTCSEEECGGGCCCTTCCEEEESSCTTCSSCSCBCEEETTTT
T ss_pred EEEeCCCcEEEEEECCCCCEEeeecccCCccccccccccCCceecccccCCCCCCCceEECCCCccccCCCCceECCCCC
Confidence 5555567888888864 66542221100 000100 00000 11468999986
Q ss_pred eEEEEeC------------------------------------CCCeEEEEeCCCCCCccceeEEEEecCCCCCCCCeEE
Q 020019 213 FLIVIHT------------------------------------FSGNLFKIDIVDGVGEGEEIKLIRVAGGPLSFGDGLE 256 (332)
Q Consensus 213 ~Lyva~~------------------------------------~~~~i~~id~~~~~~~~~~~~~v~~~g~~~~~pdGi~ 256 (332)
.+|+... ..+.|+.+|+.+++ .+-.+.... . ...+..
T Consensus 399 ~~yv~~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~~g~l~a~D~~tG~----~~W~~~~~~-~--~~~~~~ 471 (571)
T 2ad6_A 399 TLYAGLNHICMDWEPFMLPYRAGQFFVGATLAMYPGPNGPTKKEMGQIRAFDLTTGK----AKWTKWEKF-A--AWGGTL 471 (571)
T ss_dssp EEEEEEECEEEEEEECCCCCCTTSCCCCEEEEEEECTTSTTSCCCEEEEEECTTTCC----EEEEEEESS-C--CCSBCE
T ss_pred EEEEEchhccccccccccccccCCccccccceeccCccccCCCCCCeEEEEECCCCC----EEEEecCCC-C--ccceeE
Confidence 9998753 24688999998873 333343331 1 111223
Q ss_pred EeCCCeEEEEeCC-ceEEEEcCCCceEEEEEeeecCC--CcccceEEEE-ECCeEEEEEecCc
Q 020019 257 LLSPTKLVVAGNP-SARLVESSDGWETAAVVAKFSGP--VHRLATAATV-KDGRVYLNHMLGF 315 (332)
Q Consensus 257 ~~~dG~l~va~~~-~~~~v~~~dg~~~~~~~~~~~~~--~~~~pt~va~-~~g~lyv~~~~g~ 315 (332)
...+|.+|+.... ....+...+| +++-.+..+ ....| +++ .+|++||...-|.
T Consensus 472 ~t~gg~v~~g~~dg~l~a~D~~tG----~~lw~~~~~~~~~~~p--~~~~~~G~~yv~~~~G~ 528 (571)
T 2ad6_A 472 YTKGGLVWYATLDGYLKALDNKDG----KELWNFKMPSGGIGSP--MTYSFKGKQYIGSMYGV 528 (571)
T ss_dssp EETTTEEEEECTTSEEEEEETTTC----CEEEEEECSSCCCSCC--EEEEETTEEEEEEEECC
T ss_pred EECCCEEEEEcCCCeEEEEECCCC----CEEEEEeCCCCcEeee--EEEEECCEEEEEEECCC
Confidence 4467889997643 3444566677 233222212 12233 344 7999999555443
|
| >1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 | Back alignment and structure |
|---|
Probab=98.25 E-value=0.0014 Score=60.57 Aligned_cols=200 Identities=11% Similarity=0.007 Sum_probs=118.1
Q ss_pred cccceEEcCCCCEEEEEecCCeEEEEECCCCCCCccceeeeEEecccCcCCCccceEEEeCCCCeEEEEEeCcCCCccce
Q 020019 46 FRECAKWDDSGRRFIVSFLDGGIGQVAVPDDYPPGTVLEEVTLVKDLELTGNGSLGLVLDHPRNRLLVVAADVFGNKYSA 125 (332)
Q Consensus 46 ~pegia~d~~g~~~~~~~~~g~I~~vd~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~vd~~~g~l~v~~~~~~~~~~~~ 125 (332)
....+++.++++.+++...++.|..+|..+++. .. .+. . ......+++.+.+++++++... .+.
T Consensus 167 ~v~~~~~~p~~~~l~s~s~d~~v~iwd~~~~~~----~~--~~~-~----~~~v~~~~~~~~~~~~l~~~s~-----d~~ 230 (393)
T 1erj_A 167 DIYSLDYFPSGDKLVSGSGDRTVRIWDLRTGQC----SL--TLS-I----EDGVTTVAVSPGDGKYIAAGSL-----DRA 230 (393)
T ss_dssp CEEEEEECTTSSEEEEEETTSEEEEEETTTTEE----EE--EEE-C----SSCEEEEEECSTTCCEEEEEET-----TSC
T ss_pred CEEEEEEcCCCCEEEEecCCCcEEEEECCCCee----EE--EEE-c----CCCcEEEEEECCCCCEEEEEcC-----CCc
Confidence 455789999999888777789999999876652 11 221 1 1256788888844765555432 356
Q ss_pred EEEEECCCCcEEEEEecCCC--CCCCCCccceEECCCCcEEEEeCCCCeEEEEcCCCceE-EEecCC-CCCC-cccccCc
Q 020019 126 VAAYDLSTWNRLFLTQLSGP--SDGKSCADDVTVDAEGNAYVTDVTGSKIWKVGVKGEFL-SIISSP-LFTP-KEWYKNL 200 (332)
Q Consensus 126 l~~~d~~~g~~~~~~~l~~~--~~~~~~~ndiavd~dG~lyvtd~~~~~I~~v~~~g~~~-~~~~~~-~~~~-p~~~~~~ 200 (332)
+..||.++++.......... .........+++.++|+.+++-+..+.|..++...... .....+ .... .......
T Consensus 231 v~iwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~g~~l~s~s~d~~v~~wd~~~~~~~~~~~~~~~~~~~~~~~~h~ 310 (393)
T 1erj_A 231 VRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTRDGQSVVSGSLDRSVKLWNLQNANNKSDSKTPNSGTCEVTYIGHK 310 (393)
T ss_dssp EEEEETTTCCEEEEEC------CCCSSCEEEEEECTTSSEEEEEETTSEEEEEEC---------------CEEEEEECCS
T ss_pred EEEEECCCCcEEEeecccccCCCCCCCCEEEEEECCCCCEEEEEeCCCEEEEEECCCCCCcccccCCCCCcceEEEeccc
Confidence 88999998876654422100 01124567899999999888888888888877542110 000000 0000 0000011
Q ss_pred cccCeEEEccCceEEEEeCCCCeEEEEeCCCCCCccceeEEEEecCCCCCCCCeEEEeC------CCeEEEEeC
Q 020019 201 VGLNGIVYHPDGFLIVIHTFSGNLFKIDIVDGVGEGEEIKLIRVAGGPLSFGDGLELLS------PTKLVVAGN 268 (332)
Q Consensus 201 ~~~nGi~~~~dG~Lyva~~~~~~i~~id~~~~~~~~~~~~~v~~~g~~~~~pdGi~~~~------dG~l~va~~ 268 (332)
.....+++++++.+.++-...+.|..++..+++ .+..+.. .......+++.+ +++++++..
T Consensus 311 ~~v~~~~~~~~~~~l~sgs~D~~v~iwd~~~~~----~~~~l~~---h~~~v~~v~~~~~~~~~p~~~~l~sgs 377 (393)
T 1erj_A 311 DFVLSVATTQNDEYILSGSKDRGVLFWDKKSGN----PLLMLQG---HRNSVISVAVANGSSLGPEYNVFATGS 377 (393)
T ss_dssp SCEEEEEECGGGCEEEEEETTSEEEEEETTTCC----EEEEEEC---CSSCEEEEEECSSCTTCTTCEEEEEEE
T ss_pred CcEEEEEECCCCCEEEEEeCCCeEEEEECCCCe----EEEEECC---CCCCEEEEEecCCcCcCCCCCEEEEEC
Confidence 235689999999655666677889889988762 3433332 223344555543 677777653
|
| >3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe} | Back alignment and structure |
|---|
Probab=98.24 E-value=2.7e-05 Score=71.15 Aligned_cols=203 Identities=9% Similarity=0.076 Sum_probs=112.0
Q ss_pred cccceEEcCCCCEEEEEecCCeEEEEECCCCC-CCccceeeeEEecccCcCCCccceEEEeCCCCeEEEEEeCcCCCccc
Q 020019 46 FRECAKWDDSGRRFIVSFLDGGIGQVAVPDDY-PPGTVLEEVTLVKDLELTGNGSLGLVLDHPRNRLLVVAADVFGNKYS 124 (332)
Q Consensus 46 ~pegia~d~~g~~~~~~~~~g~I~~vd~~~~~-~~~~~~~~~~~~~~~~~~~~~~~gi~vd~~~g~l~v~~~~~~~~~~~ 124 (332)
....++++++++.+++...++.|..++..+++ .. ....+... ......+++.++ ++++++... .+
T Consensus 57 ~v~~~~~s~~~~~l~s~s~d~~v~vwd~~~~~~~~----~~~~~~~~----~~~v~~~~~~~~-~~~l~~~~~-----d~ 122 (377)
T 3dwl_C 57 IVTCVDWAPKSNRIVTCSQDRNAYVYEKRPDGTWK----QTLVLLRL----NRAATFVRWSPN-EDKFAVGSG-----AR 122 (377)
T ss_dssp CEEEEEECTTTCCEEEEETTSSEEEC------CCC----CEEECCCC----SSCEEEEECCTT-SSCCEEEES-----SS
T ss_pred eEEEEEEeCCCCEEEEEeCCCeEEEEEcCCCCcee----eeeEeccc----CCceEEEEECCC-CCEEEEEec-----CC
Confidence 34568999999988877778999999877654 10 10011111 125788999996 554444322 35
Q ss_pred eEEEEECCCCcEE-EEEecCCCCCCCCCccceEECCCCcEEEEeCCCCeEEEEcCCCc----------------eEEEec
Q 020019 125 AVAAYDLSTWNRL-FLTQLSGPSDGKSCADDVTVDAEGNAYVTDVTGSKIWKVGVKGE----------------FLSIIS 187 (332)
Q Consensus 125 ~l~~~d~~~g~~~-~~~~l~~~~~~~~~~ndiavd~dG~lyvtd~~~~~I~~v~~~g~----------------~~~~~~ 187 (332)
.+..||.++++.. ....+..+ .....+.+++.|+|+++++-+..+.|..++.... ......
T Consensus 123 ~i~iwd~~~~~~~~~~~~~~~~--h~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~ 200 (377)
T 3dwl_C 123 VISVCYFEQENDWWVSKHLKRP--LRSTILSLDWHPNNVLLAAGCADRKAYVLSAYVRDVDAKPEASVWGSRLPFNTVCA 200 (377)
T ss_dssp CEEECCC-----CCCCEEECSS--CCSCEEEEEECTTSSEEEEEESSSCEEEEEECCSSCC-CCCSCSSCSCCCEEEEEE
T ss_pred eEEEEEECCcccceeeeEeecc--cCCCeEEEEEcCCCCEEEEEeCCCEEEEEEEEecccCCCccccccccccchhhhhh
Confidence 6888999876521 01223211 1356788999999988887777787777765310 000000
Q ss_pred CCCCCCcccccCccccCeEEEccCceEEEEeCCCCeEEEEeCCCCCCccceeEEEEecCCCCCCCCeEEEeCCCeEEEEe
Q 020019 188 SPLFTPKEWYKNLVGLNGIVYHPDGFLIVIHTFSGNLFKIDIVDGVGEGEEIKLIRVAGGPLSFGDGLELLSPTKLVVAG 267 (332)
Q Consensus 188 ~~~~~~p~~~~~~~~~nGi~~~~dG~Lyva~~~~~~i~~id~~~~~~~~~~~~~v~~~g~~~~~pdGi~~~~dG~l~va~ 267 (332)
.+ ......+.++|+|+|.++++-...+.|..+++.+++.....+..+.. .......+++.++|+++++.
T Consensus 201 --~~------~~~~~v~~~~~sp~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~---~~~~v~~~~~s~~~~~l~~~ 269 (377)
T 3dwl_C 201 --EY------PSGGWVHAVGFSPSGNALAYAGHDSSVTIAYPSAPEQPPRALITVKL---SQLPLRSLLWANESAIVAAG 269 (377)
T ss_dssp --CC------CCSSSEEEEEECTTSSCEEEEETTTEEC-CEECSTTSCEEECCCEEC---SSSCEEEEEEEETTEEEEEE
T ss_pred --cc------cCCceEEEEEECCCCCEEEEEeCCCcEEEEECCCCCCcceeeEeecC---CCCceEEEEEcCCCCEEEEE
Confidence 00 11234678999999954444456778888888766310000222221 22345689999999988886
Q ss_pred CCceEEEE
Q 020019 268 NPSARLVE 275 (332)
Q Consensus 268 ~~~~~~v~ 275 (332)
.....++.
T Consensus 270 ~~~~~~~~ 277 (377)
T 3dwl_C 270 YNYSPILL 277 (377)
T ss_dssp SSSSEEEE
T ss_pred cCCcEEEE
Confidence 54333333
|
| >3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A | Back alignment and structure |
|---|
Probab=98.23 E-value=0.00053 Score=61.62 Aligned_cols=116 Identities=12% Similarity=0.032 Sum_probs=76.9
Q ss_pred ccceEEcCC----CCEEEEEecCCeEEEEECCCCCCCccceeeeEEecccCcCCCccceEEEeCCCCeEEEEEeCcCCCc
Q 020019 47 RECAKWDDS----GRRFIVSFLDGGIGQVAVPDDYPPGTVLEEVTLVKDLELTGNGSLGLVLDHPRNRLLVVAADVFGNK 122 (332)
Q Consensus 47 pegia~d~~----g~~~~~~~~~g~I~~vd~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~vd~~~g~l~v~~~~~~~~~ 122 (332)
...+++.++ |+++++...+|.|..++..+++. .. .+... ......+.+.++++.++++...
T Consensus 72 v~~~~~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~----~~--~~~~~----~~~i~~~~~~~~~~~~l~s~~~----- 136 (366)
T 3k26_A 72 FYTCAWTYDSNTSHPLLAVAGSRGIIRIINPITMQC----IK--HYVGH----GNAINELKFHPRDPNLLLSVSK----- 136 (366)
T ss_dssp EEEEEEEECTTTCCEEEEEEETTCEEEEECTTTCCE----EE--EEESC----CSCEEEEEECSSCTTEEEEEET-----
T ss_pred EEEEEeccCCCCCCCEEEEecCCCEEEEEEchhceE----ee--eecCC----CCcEEEEEECCCCCCEEEEEeC-----
Confidence 456788888 56777777789999999876652 11 22211 1257899999833555554432
Q ss_pred cceEEEEECCCCcEEEEEecCCCCCCCCCccceEECCCCcEEEEeCCCCeEEEEcCC
Q 020019 123 YSAVAAYDLSTWNRLFLTQLSGPSDGKSCADDVTVDAEGNAYVTDVTGSKIWKVGVK 179 (332)
Q Consensus 123 ~~~l~~~d~~~g~~~~~~~l~~~~~~~~~~ndiavd~dG~lyvtd~~~~~I~~v~~~ 179 (332)
.+.|..||.++++........ .........++++++|+.+++-...+.|..++..
T Consensus 137 dg~i~iwd~~~~~~~~~~~~~--~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~ 191 (366)
T 3k26_A 137 DHALRLWNIQTDTLVAIFGGV--EGHRDEVLSADYDLLGEKIMSCGMDHSLKLWRIN 191 (366)
T ss_dssp TSCEEEEETTTTEEEEEECST--TSCSSCEEEEEECTTSSEEEEEETTSCEEEEESC
T ss_pred CCeEEEEEeecCeEEEEeccc--ccccCceeEEEECCCCCEEEEecCCCCEEEEECC
Confidence 356899999988766544210 1113567889999999877777667777777654
|
| >3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A | Back alignment and structure |
|---|
Probab=98.22 E-value=0.0003 Score=69.61 Aligned_cols=198 Identities=12% Similarity=0.006 Sum_probs=110.3
Q ss_pred cccceEEcCCCCEEEEEecC----------CeEEEEECCC------CCCCccceeeeEEe-cccCcCCCccceEEEeCCC
Q 020019 46 FRECAKWDDSGRRFIVSFLD----------GGIGQVAVPD------DYPPGTVLEEVTLV-KDLELTGNGSLGLVLDHPR 108 (332)
Q Consensus 46 ~pegia~d~~g~~~~~~~~~----------g~I~~vd~~~------~~~~~~~~~~~~~~-~~~~~~~~~~~gi~vd~~~ 108 (332)
...+++|++||+.++....+ .+|++++.++ ++. . .+. ... .....++++|+.
T Consensus 131 ~~~~~~~spDg~~l~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~-----~--~l~~~~~----~~~~~~~~SpDG 199 (662)
T 3azo_A 131 RWADPVLLPERGEVWCMAEEFTGEGPSDVRRFLAAVPLDGSAAADRSAV-----R--ELSDDAH----RFVTGPRLSPDG 199 (662)
T ss_dssp EEEEEEEETTTTEEEEEEEEECSSSTTCEEEEEEEEETTSTTTTCGGGS-----E--ESSCSCS----SEECCCEECTTS
T ss_pred cccCcEECCCCCEEEEEEecccCCCCCCceeEEEEEECCCCccccCCce-----e--EEEecCC----CcccCceECCCC
Confidence 45678999999866544222 4799999886 432 1 222 111 245678899973
Q ss_pred CeEEEEEeCcCC--CccceEEEEECC-CCcEEEEEecCCCCCCCCCccceEECCCCcEEEEeCCCC--eEEEEcCC-Cce
Q 020019 109 NRLLVVAADVFG--NKYSAVAAYDLS-TWNRLFLTQLSGPSDGKSCADDVTVDAEGNAYVTDVTGS--KIWKVGVK-GEF 182 (332)
Q Consensus 109 g~l~v~~~~~~~--~~~~~l~~~d~~-~g~~~~~~~l~~~~~~~~~~ndiavd~dG~lyvtd~~~~--~I~~v~~~-g~~ 182 (332)
..|+++..+... -....|+++|.+ +|+......+.. . .......+++.|||++|++....+ .||+++.+ |+.
T Consensus 200 ~~la~~~~~~~~~~~~~~~i~~~d~~~~g~~~~~~~l~~-~-~~~~~~~~~~spdg~l~~~~~~~~~~~l~~~~~~~~~~ 277 (662)
T 3azo_A 200 RQAVWLAWDHPRMPWEGTELKTARVTEDGRFADTRTLLG-G-PEEAIAQAEWAPDGSLIVATDRTGWWNLHRVDPATGAA 277 (662)
T ss_dssp SEEEEEEECTTCCTTTCEEEEEEEECTTSCEEEEEEEEE-E-TTBCEEEEEECTTSCEEEEECTTSSCEEEEECTTTCCE
T ss_pred CEEEEEECCCCCCCCCCcEEEEEEECCCCcccccEEeCC-C-CCceEcceEECCCCeEEEEECCCCCeEEEEEECCCCce
Confidence 345555543210 012579999998 573222222210 0 124566789999999887765555 89999985 554
Q ss_pred EEEecCC-CCCCcccccCccccCeEEEccCceEEE-EeCCCCeEEEEeCCCCCCccceeEEEEecCCCCCCCCeE-EEeC
Q 020019 183 LSIISSP-LFTPKEWYKNLVGLNGIVYHPDGFLIV-IHTFSGNLFKIDIVDGVGEGEEIKLIRVAGGPLSFGDGL-ELLS 259 (332)
Q Consensus 183 ~~~~~~~-~~~~p~~~~~~~~~nGi~~~~dG~Lyv-a~~~~~~i~~id~~~~~~~~~~~~~v~~~g~~~~~pdGi-~~~~ 259 (332)
..+.... ....|.+ ..+...++++++|.+++ +.....+||+++++++ ..+.+... ......+ ..+.
T Consensus 278 ~~l~~~~~~~~~p~w---~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~-----~~~~l~~~---~~~~~~~~s~~~ 346 (662)
T 3azo_A 278 TQLCRREEEFAGPLW---TPGMRWFAPLANGLIAVVHGKGAAVLGILDPESG-----ELVDAAGP---WTEWAATLTVSG 346 (662)
T ss_dssp EESSCCSSBSSCCCC---STTCCSEEECTTSCEEEEEBSSSCEEEEEETTTT-----EEEECCSS---CCEEEEEEEEET
T ss_pred eecccccccccCccc---cccCceEeEeCCCEEEEEEEcCccEEEEEECCCC-----cEEEecCC---CCeEEEEEecCC
Confidence 4432211 1111111 11245789999995444 4334457899998866 34433321 1223355 5555
Q ss_pred CCeEEEEe
Q 020019 260 PTKLVVAG 267 (332)
Q Consensus 260 dG~l~va~ 267 (332)
+..+|++.
T Consensus 347 ~~~~~~~~ 354 (662)
T 3azo_A 347 TRAVGVAA 354 (662)
T ss_dssp TEEEEEEE
T ss_pred CEEEEEEc
Confidence 54455544
|
| >1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A | Back alignment and structure |
|---|
Probab=98.21 E-value=0.0021 Score=63.21 Aligned_cols=162 Identities=11% Similarity=0.118 Sum_probs=101.0
Q ss_pred cccceEEcCCCCEEEEEecC----CeEEEEECCCCCCCccceeeeEEecccCcCCCccceEEEeCCCCeEEEEEeCcCCC
Q 020019 46 FRECAKWDDSGRRFIVSFLD----GGIGQVAVPDDYPPGTVLEEVTLVKDLELTGNGSLGLVLDHPRNRLLVVAADVFGN 121 (332)
Q Consensus 46 ~pegia~d~~g~~~~~~~~~----g~I~~vd~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~vd~~~g~l~v~~~~~~~~ 121 (332)
....++|+++|+.+++...+ +.|+.++. ++. .. ++... ...+..+++.|+....+++...
T Consensus 105 ~v~~v~fs~dg~~l~~~~~~~~~~~~v~~wd~--~~~----~~--~l~gh----~~~v~~v~f~p~~~~~l~s~s~---- 168 (611)
T 1nr0_A 105 PVKDISWDSESKRIAAVGEGRERFGHVFLFDT--GTS----NG--NLTGQ----ARAMNSVDFKPSRPFRIISGSD---- 168 (611)
T ss_dssp CEEEEEECTTSCEEEEEECCSSCSEEEEETTT--CCB----CB--CCCCC----SSCEEEEEECSSSSCEEEEEET----
T ss_pred ceEEEEECCCCCEEEEEECCCCceeEEEEeeC--CCC----cc--eecCC----CCCceEEEECCCCCeEEEEEeC----
Confidence 34578899998877655321 46777763 321 01 12111 1257889999973333443332
Q ss_pred ccceEEEEECCCCcEEEEEecCCCCCCCCCccceEECCCCcEEEEeCCCCeEEEEcCC-CceEEEecCCCCCCcccccCc
Q 020019 122 KYSAVAAYDLSTWNRLFLTQLSGPSDGKSCADDVTVDAEGNAYVTDVTGSKIWKVGVK-GEFLSIISSPLFTPKEWYKNL 200 (332)
Q Consensus 122 ~~~~l~~~d~~~g~~~~~~~l~~~~~~~~~~ndiavd~dG~lyvtd~~~~~I~~v~~~-g~~~~~~~~~~~~~p~~~~~~ 200 (332)
.+.+..||.++++... .+.+ .....+.+++.|+|+++++-+..+.|...+.. |+....+........ ...
T Consensus 169 -D~~v~lwd~~~~~~~~--~l~~---H~~~V~~v~fspdg~~las~s~D~~i~lwd~~~g~~~~~~~~~~~~~~---~h~ 239 (611)
T 1nr0_A 169 -DNTVAIFEGPPFKFKS--TFGE---HTKFVHSVRYNPDGSLFASTGGDGTIVLYNGVDGTKTGVFEDDSLKNV---AHS 239 (611)
T ss_dssp -TSCEEEEETTTBEEEE--EECC---CSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEECBCTTSSSC---SSS
T ss_pred -CCeEEEEECCCCeEee--eecc---ccCceEEEEECCCCCEEEEEECCCcEEEEECCCCcEeeeecccccccc---ccC
Confidence 3568889988776543 3321 13467889999999999998888998888854 554443321111000 012
Q ss_pred cccCeEEEccCceEEEEeCCCCeEEEEeCCCC
Q 020019 201 VGLNGIVYHPDGFLIVIHTFSGNLFKIDIVDG 232 (332)
Q Consensus 201 ~~~nGi~~~~dG~Lyva~~~~~~i~~id~~~~ 232 (332)
....+++|+|||.++++-...+.|..+++.++
T Consensus 240 ~~V~~v~~spdg~~l~s~s~D~~v~lWd~~~~ 271 (611)
T 1nr0_A 240 GSVFGLTWSPDGTKIASASADKTIKIWNVATL 271 (611)
T ss_dssp SCEEEEEECTTSSEEEEEETTSEEEEEETTTT
T ss_pred CCEEEEEECCCCCEEEEEeCCCeEEEEeCCCC
Confidence 34679999999966666667888988898876
|
| >2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R | Back alignment and structure |
|---|
Probab=98.20 E-value=0.0024 Score=57.71 Aligned_cols=198 Identities=12% Similarity=-0.016 Sum_probs=118.4
Q ss_pred ecCCccccceEE-----cC-CCCEEEEEecCCeEEEEECCCCCCCccceeeeEEecccCcCCCccceEEEeCCCCeEEEE
Q 020019 41 HSSSFFRECAKW-----DD-SGRRFIVSFLDGGIGQVAVPDDYPPGTVLEEVTLVKDLELTGNGSLGLVLDHPRNRLLVV 114 (332)
Q Consensus 41 ~~~~~~pegia~-----d~-~g~~~~~~~~~g~I~~vd~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~vd~~~g~l~v~ 114 (332)
.+.......+++ .+ +++++++...++.|..++..+.+...........+. + -......++++++ +.+.++
T Consensus 18 ~gH~~~V~~~~~~~s~~~~~d~~~l~sgs~D~~v~iWd~~~~~~~~~~~~~~~~l~--~-h~~~V~~~~~~~~-~~~l~s 93 (343)
T 2xzm_R 18 EGHSDWVTSIVAGFSQKENEDSPVLISGSRDKTVMIWKLYEEEQNGYFGIPHKALT--G-HNHFVSDLALSQE-NCFAIS 93 (343)
T ss_dssp ECCSSCEEEEEECCCSSTTCCCCEEEEEETTSCEEEEEECSSCCSSBSEEEEEEEC--C-CSSCEEEEEECSS-TTEEEE
T ss_pred ccchhhhhheeeEEEeecCCCCCEEEEEcCCCEEEEEECCcCCcccccccccchhc--c-CCCceEEEEECCC-CCEEEE
Confidence 343334566777 55 788888777789888888654321000000001111 1 0124678999996 665444
Q ss_pred EeCcCCCccceEEEEECCCCcEEEEEecCCCCCCCCCccceEECCCCcEEEEeCCCCeEEEEcCCCceEEEecCCCCCCc
Q 020019 115 AADVFGNKYSAVAAYDLSTWNRLFLTQLSGPSDGKSCADDVTVDAEGNAYVTDVTGSKIWKVGVKGEFLSIISSPLFTPK 194 (332)
Q Consensus 115 ~~~~~~~~~~~l~~~d~~~g~~~~~~~l~~~~~~~~~~ndiavd~dG~lyvtd~~~~~I~~v~~~g~~~~~~~~~~~~~p 194 (332)
... .+.+..||.++++....+.- . ......+++.|+|+.+++-+..+.|..++..++..........
T Consensus 94 ~s~-----D~~v~lwd~~~~~~~~~~~~--h---~~~v~~v~~sp~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~--- 160 (343)
T 2xzm_R 94 SSW-----DKTLRLWDLRTGTTYKRFVG--H---QSEVYSVAFSPDNRQILSAGAEREIKLWNILGECKFSSAEKEN--- 160 (343)
T ss_dssp EET-----TSEEEEEETTSSCEEEEEEC--C---CSCEEEEEECSSTTEEEEEETTSCEEEEESSSCEEEECCTTTS---
T ss_pred EcC-----CCcEEEEECCCCcEEEEEcC--C---CCcEEEEEECCCCCEEEEEcCCCEEEEEeccCCceeeeecccC---
Confidence 332 35788999999887654332 1 2456789999999988887788888888876553322111000
Q ss_pred ccccCccccCeEEEccCc----------eEEEEeCCCCeEEEEeCCCCCCccceeEEEEecCCCCCCCCeEEEeCCCeEE
Q 020019 195 EWYKNLVGLNGIVYHPDG----------FLIVIHTFSGNLFKIDIVDGVGEGEEIKLIRVAGGPLSFGDGLELLSPTKLV 264 (332)
Q Consensus 195 ~~~~~~~~~nGi~~~~dG----------~Lyva~~~~~~i~~id~~~~~~~~~~~~~v~~~g~~~~~pdGi~~~~dG~l~ 264 (332)
.......++++|++ .++++-...++|..++.... ....+.. .......+++.++|+++
T Consensus 161 ----~~~~v~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~-----~~~~~~~---h~~~v~~~~~s~~g~~l 228 (343)
T 2xzm_R 161 ----HSDWVSCVRYSPIMKSANKVQPFAPYFASVGWDGRLKVWNTNFQ-----IRYTFKA---HESNVNHLSISPNGKYI 228 (343)
T ss_dssp ----CSSCEEEEEECCCCCSCSCCCSSCCEEEEEETTSEEEEEETTTE-----EEEEEEC---CSSCEEEEEECTTSSEE
T ss_pred ----CCceeeeeeeccccccccccCCCCCEEEEEcCCCEEEEEcCCCc-----eeEEEcC---ccccceEEEECCCCCEE
Confidence 11234677788775 45666666788887884321 2332321 22445678999999877
Q ss_pred EEe
Q 020019 265 VAG 267 (332)
Q Consensus 265 va~ 267 (332)
++.
T Consensus 229 ~sg 231 (343)
T 2xzm_R 229 ATG 231 (343)
T ss_dssp EEE
T ss_pred EEE
Confidence 775
|
| >1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A | Back alignment and structure |
|---|
Probab=98.20 E-value=0.0012 Score=63.87 Aligned_cols=212 Identities=12% Similarity=0.034 Sum_probs=125.1
Q ss_pred EEecCCcc-ccceEEcC--CCCEEEEEecCCeEEEEECCCC------CCCccceeeeEEecccCcCCCccceEEEeCCCC
Q 020019 39 HYHSSSFF-RECAKWDD--SGRRFIVSFLDGGIGQVAVPDD------YPPGTVLEEVTLVKDLELTGNGSLGLVLDHPRN 109 (332)
Q Consensus 39 ~~~~~~~~-pegia~d~--~g~~~~~~~~~g~I~~vd~~~~------~~~~~~~~~~~~~~~~~~~~~~~~gi~vd~~~g 109 (332)
.+.+.... ...+++++ +++++++...+|.|..++..++ +.. ... .+.. .......++++++ +
T Consensus 58 ~~~~h~~~~v~~~~~sp~~~~~~l~s~~~dg~v~vw~~~~~~~~~~~~~~--~~~--~~~~----~~~~v~~~~~s~~-~ 128 (615)
T 1pgu_A 58 QFTGHGSSVVTTVKFSPIKGSQYLCSGDESGKVIVWGWTFDKESNSVEVN--VKS--EFQV----LAGPISDISWDFE-G 128 (615)
T ss_dssp EECTTTTSCEEEEEECSSTTCCEEEEEETTSEEEEEEEEEEGGGTEEEEE--EEE--EEEC----CSSCEEEEEECTT-S
T ss_pred EEecCCCceEEEEEECcCCCCCEEEEecCCCEEEEEeCCCCccccccccc--ccc--hhhc----ccccEEEEEEeCC-C
Confidence 33443334 67899999 9998887777899888887543 110 001 1211 1125789999997 6
Q ss_pred eEEEEEeCcCCCccceEEEEECCCCcEEEEEecCCCCCCCCCccceEECCCCc-EEEEeCCCCeEEEEcCC-CceEEEec
Q 020019 110 RLLVVAADVFGNKYSAVAAYDLSTWNRLFLTQLSGPSDGKSCADDVTVDAEGN-AYVTDVTGSKIWKVGVK-GEFLSIIS 187 (332)
Q Consensus 110 ~l~v~~~~~~~~~~~~l~~~d~~~g~~~~~~~l~~~~~~~~~~ndiavd~dG~-lyvtd~~~~~I~~v~~~-g~~~~~~~ 187 (332)
+.+++..... ...+.+..|| +++... .+.+ .....+.+++.|+|. ++++-+..+.|..++.. ++....+.
T Consensus 129 ~~l~~~~~~~-~~~~~v~~~d--~~~~~~--~~~~---~~~~v~~~~~~~~~~~~l~~~~~d~~v~vwd~~~~~~~~~~~ 200 (615)
T 1pgu_A 129 RRLCVVGEGR-DNFGVFISWD--SGNSLG--EVSG---HSQRINACHLKQSRPMRSMTVGDDGSVVFYQGPPFKFSASDR 200 (615)
T ss_dssp SEEEEEECCS-SCSEEEEETT--TCCEEE--ECCS---CSSCEEEEEECSSSSCEEEEEETTTEEEEEETTTBEEEEEEC
T ss_pred CEEEEeccCC-CCccEEEEEE--CCCcce--eeec---CCccEEEEEECCCCCcEEEEEeCCCcEEEEeCCCcceeeeec
Confidence 5444433210 0125677777 445433 3321 135678899999986 78888888999998866 34333322
Q ss_pred CCCCCCcccccCccccCeEEEccC-ceEEEEeCCCCeEEEEeCCCCCCccceeEEEEec-CCCCCCCCeEEEeCCCeEEE
Q 020019 188 SPLFTPKEWYKNLVGLNGIVYHPD-GFLIVIHTFSGNLFKIDIVDGVGEGEEIKLIRVA-GGPLSFGDGLELLSPTKLVV 265 (332)
Q Consensus 188 ~~~~~~p~~~~~~~~~nGi~~~~d-G~Lyva~~~~~~i~~id~~~~~~~~~~~~~v~~~-g~~~~~pdGi~~~~dG~l~v 265 (332)
.... .......++++|+ |.++++-...+.|..+++.+++ .+..+... .........+++. ++++++
T Consensus 201 ~~~~-------~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~----~~~~~~~~~~~~~~~v~~~~~~-~~~~l~ 268 (615)
T 1pgu_A 201 THHK-------QGSFVRDVEFSPDSGEFVITVGSDRKISCFDGKSGE----FLKYIEDDQEPVQGGIFALSWL-DSQKFA 268 (615)
T ss_dssp SSSC-------TTCCEEEEEECSTTCCEEEEEETTCCEEEEETTTCC----EEEECCBTTBCCCSCEEEEEES-SSSEEE
T ss_pred ccCC-------CCceEEEEEECCCCCCEEEEEeCCCeEEEEECCCCC----EeEEecccccccCCceEEEEEc-CCCEEE
Confidence 1100 0013578999999 8555555567889999988762 34433110 0122446688888 877666
Q ss_pred Ee-C-CceEEEEcCCC
Q 020019 266 AG-N-PSARLVESSDG 279 (332)
Q Consensus 266 a~-~-~~~~~v~~~dg 279 (332)
+. . ...++.....+
T Consensus 269 ~~~~d~~i~~wd~~~~ 284 (615)
T 1pgu_A 269 TVGADATIRVWDVTTS 284 (615)
T ss_dssp EEETTSEEEEEETTTT
T ss_pred EEcCCCcEEEEECCCC
Confidence 64 3 33444455556
|
| >3s25_A Hypothetical 7-bladed beta-propeller-like protein; structural genomics, joint center F structural genomics, JCSG; 1.88A {Eubacterium rectale} | Back alignment and structure |
|---|
Probab=98.19 E-value=0.0002 Score=64.68 Aligned_cols=189 Identities=8% Similarity=0.039 Sum_probs=109.2
Q ss_pred CeEEEEECCCCCCCccceeeeEEecccCcCCCccceEEEeCCCCeEEEEEeCcCCCccceEEEEECCCCcEEEEEecCCC
Q 020019 66 GGIGQVAVPDDYPPGTVLEEVTLVKDLELTGNGSLGLVLDHPRNRLLVVAADVFGNKYSAVAAYDLSTWNRLFLTQLSGP 145 (332)
Q Consensus 66 g~I~~vd~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~vd~~~g~l~v~~~~~~~~~~~~l~~~d~~~g~~~~~~~l~~~ 145 (332)
..|++++.++++. + .+...+. ..+.++ .+.||.++... .....|++.+++.........-
T Consensus 88 ~~Iy~i~~dg~~~-----~--~l~~~~~------~~~s~~--g~~Iy~~~~~~--~~~~~Iy~~~~dGs~~~~lt~~--- 147 (302)
T 3s25_A 88 NSLCRIKRNGHGS-----T--VLDPDPC------IYASLI--GNYIYYLHYDT--QTATSLYRIRIDGEEKKKIKNH--- 147 (302)
T ss_dssp EEEEEEETTSCCC-----E--EEECSCE------EEEEEE--TTEEEEEEESS--SSCEEEEEEETTSCCCEEEESS---
T ss_pred CeEEEEeCCCCcc-----e--EeecCCc------cEEEEe--CCEEEEEeecC--CCCceEEEEECCCCCeEEEeCC---
Confidence 5799999986652 1 3332111 234444 47899987210 0245789999875444333221
Q ss_pred CCCCCCccceEECCCC-cEEEEeCCCCeEEEEcCCCceEEEecCCCCCCcccccCccccCeEEEccCc-eEEEEeCCC-C
Q 020019 146 SDGKSCADDVTVDAEG-NAYVTDVTGSKIWKVGVKGEFLSIISSPLFTPKEWYKNLVGLNGIVYHPDG-FLIVIHTFS-G 222 (332)
Q Consensus 146 ~~~~~~~ndiavd~dG-~lyvtd~~~~~I~~v~~~g~~~~~~~~~~~~~p~~~~~~~~~nGi~~~~dG-~Lyva~~~~-~ 222 (332)
. . .+++++| +||+++.+.++|++.+.+|...+.+... +..+.+.|+| .||+++... .
T Consensus 148 -~--~----~~~~~~g~~iy~t~~g~~~Iy~~~l~g~~~~~l~~~-------------~~~~~~~P~g~~iy~t~~~~~~ 207 (302)
T 3s25_A 148 -Y--L----FTCNTSDRYFYYNNPKNGQLYRYDTASQSEALFYDC-------------NCYKPVVLDDTNVYYMDVNRDN 207 (302)
T ss_dssp -C--C----CCSEEETTEEEEECTTTCCEEEEETTTTEEEEEECS-------------CEEEEEEEETTEEEEEEGGGTT
T ss_pred -C--c----eEeeEECCEEEEEeCCCceEEEEECCCCCEEEEeCC-------------CccceeeecCCEEEEEEcCCCc
Confidence 0 1 3346665 6999999889999999998754433211 1123466877 999999764 5
Q ss_pred eEEEEeCCCCCCccceeEEEEecCCCCCCCCeEEEeCC-CeEEEEeCC--ceEEEEcCCCceEEEEEeeecCCCcccceE
Q 020019 223 NLFKIDIVDGVGEGEEIKLIRVAGGPLSFGDGLELLSP-TKLVVAGNP--SARLVESSDGWETAAVVAKFSGPVHRLATA 299 (332)
Q Consensus 223 ~i~~id~~~~~~~~~~~~~v~~~g~~~~~pdGi~~~~d-G~l~va~~~--~~~~v~~~dg~~~~~~~~~~~~~~~~~pt~ 299 (332)
+|+|.++++. ..+.+ .. ..+ | .++++ +.||.+... ........||.....+... . ...
T Consensus 208 ~I~~~~ldG~-----~~~~L-t~-~~~--~---~~~~~g~~Iy~~~~~~~~~i~~~~~DG~~r~~l~~~----~---~~~ 268 (302)
T 3s25_A 208 AIVHVNINNP-----NPVVL-TE-ANI--E---HYNVYGSLIFYQRGGDNPALCVVKNDGTGFKELAKG----E---FCN 268 (302)
T ss_dssp EEEEECSSSC-----CCEEC-SC-SCE--E---EEEEETTEEEEEECSSSCEEEEEETTSCCCEEEEES----C---EEE
T ss_pred EEEEEECCCC-----CeEEE-eC-CCc--c---eEEECCCEEEEEECCCCcEEEEEECCCCccEEeeCC----c---cce
Confidence 8999999965 23322 22 122 2 25554 567776322 2222345677333333321 1 125
Q ss_pred EEEECCeEEEEEec
Q 020019 300 ATVKDGRVYLNHML 313 (332)
Q Consensus 300 va~~~g~lyv~~~~ 313 (332)
+++.+++||.+.+.
T Consensus 269 i~i~~d~Iy~td~~ 282 (302)
T 3s25_A 269 INVTSQYVYFTDFV 282 (302)
T ss_dssp EEECSSEEEEEETT
T ss_pred EEEeCCEEEEEECC
Confidence 67788999987653
|
| >2wg3_C Hedgehog-interacting protein; lipoprotein, development, membrane, secreted, protease, PALM hydrolase, developmental protein, autocatalytic cleavage; HET: NAG; 2.60A {Homo sapiens} PDB: 2wg4_B 2wfx_B 2wft_A 3ho3_A 3ho4_A 3ho5_A | Back alignment and structure |
|---|
Probab=98.18 E-value=0.00054 Score=65.52 Aligned_cols=213 Identities=12% Similarity=0.049 Sum_probs=110.4
Q ss_pred cccceEEcCC----CCEEEEEec--C----------CeEEEEECCCCCC-CccceeeeEEeccc-CcCCCccceEEEeCC
Q 020019 46 FRECAKWDDS----GRRFIVSFL--D----------GGIGQVAVPDDYP-PGTVLEEVTLVKDL-ELTGNGSLGLVLDHP 107 (332)
Q Consensus 46 ~pegia~d~~----g~~~~~~~~--~----------g~I~~vd~~~~~~-~~~~~~~~~~~~~~-~~~~~~~~gi~vd~~ 107 (332)
.+-||+++|+ +.+|+.-.. . .+|.|+....+.. ..+..+...++..+ ....-....|++++|
T Consensus 70 Gllgia~~P~f~~n~~lYv~yt~~~~~~~~~~~~~~~~v~r~~~~~~~~~~~d~~~~~~i~~~~~~~~~H~g~~l~fgpD 149 (463)
T 2wg3_C 70 GLLSLAFHPNYKKNGKLYVSYTTNQERWAIGPHDHILRVVEYTVSRKNPHQVDLRTARVFLEVAELHRKHLGGQLLFGPD 149 (463)
T ss_dssp SEEEEEECTTHHHHCEEEEEEEECCCSSCSSSSCEEEEEEEEEBCTTCTTSBCGGGCEEEEEEEESSSSSCEEEEEECTT
T ss_pred cceeeEeCCCCcCCCEEEEEEeCCCCCcccCCcccceEEEEEEEcCCCCCccCCCCceEEEEcCCCCCcccCCcEeECCC
Confidence 3457999996 666665421 1 2788888653210 00010111233222 111123467999997
Q ss_pred CCeEEEEEeCcCC------------CccceEEEEECCCCcEEEEEecC--CC------------CCCCCCccceEECCC-
Q 020019 108 RNRLLVVAADVFG------------NKYSAVAAYDLSTWNRLFLTQLS--GP------------SDGKSCADDVTVDAE- 160 (332)
Q Consensus 108 ~g~l~v~~~~~~~------------~~~~~l~~~d~~~g~~~~~~~l~--~~------------~~~~~~~ndiavd~d- 160 (332)
|.|||+..+... ...++|+++|++.......+.++ .| .-+...|.++++|++
T Consensus 150 -G~LYv~~Gd~~~~~~~~~~~q~~~~~~GkIlRi~~dg~~~~~~y~iP~dNPf~~~~~~~~eI~a~G~RNp~gla~dp~t 228 (463)
T 2wg3_C 150 -GFLYIILGDGMITLDDMEEMDGLSDFTGSVLRLDVDTDMCNVPYSIPRSNPHFNSTNQPPEVFAHGLHDPGRCAVDRHP 228 (463)
T ss_dssp -SCEEEEECCTTCCHHHHHHCTTCCSCTTEEEEEBCCCCCSSCSCBCCTTSTTTTCSSSCTTEEEECCSSCCBEEEESSC
T ss_pred -CcEEEEeCCCCCCCCccccccCcCCCCeeEEEEECCCCcccccCcCCCCCCCcCCCCCcccEEEECCCCcceEEECCCC
Confidence 999999876431 22468999988752100000000 00 013457999999997
Q ss_pred ----C--cEEEEeCCC-----CeEEEEcCCCceEEEecCCCCCCcccc-c--CccccCeEEEccC-------ceEEEEeC
Q 020019 161 ----G--NAYVTDVTG-----SKIWKVGVKGEFLSIISSPLFTPKEWY-K--NLVGLNGIVYHPD-------GFLIVIHT 219 (332)
Q Consensus 161 ----G--~lyvtd~~~-----~~I~~v~~~g~~~~~~~~~~~~~p~~~-~--~~~~~nGi~~~~d-------G~Lyva~~ 219 (332)
| .+|.+|... ..|..+.+.+.. ....|... . ....+.|+++-.. |.+++++.
T Consensus 229 g~~~G~l~~~~~D~~G~~~~~~ei~~i~~G~~y-------G~~~P~~~~~~~~g~Ap~G~~~Y~G~~fP~~~g~~f~~~~ 301 (463)
T 2wg3_C 229 TDININLTILCSDSNGKNRSSARILQIIKGKDY-------ESEPSLLEFKPFSNGPLVGGFVYRGCQSERLYGSYVFGDR 301 (463)
T ss_dssp SSTTCSEEEEEECC------CEEEEEEC----C-------CSCCCCEECCC----CEEEEEECCCSSCTTTTTCEEEEET
T ss_pred CCcccceEEEecccCCCCCCCCeEeeeccCCCC-------CCCCCeEEeeCCCCccccceEEEeCCCChhhcceEEEecC
Confidence 5 467788521 234444322111 01122210 0 1145778887532 45889988
Q ss_pred CCCeEEEEeCCCCCCccceeEEEEec------CCCCCCCCeEEEeCCCeEEEEeC
Q 020019 220 FSGNLFKIDIVDGVGEGEEIKLIRVA------GGPLSFGDGLELLSPTKLVVAGN 268 (332)
Q Consensus 220 ~~~~i~~id~~~~~~~~~~~~~v~~~------g~~~~~pdGi~~~~dG~l~va~~ 268 (332)
. ++|+++.++..+... ..+.+... +.....|-++++++||.|||++.
T Consensus 302 ~-g~i~~~~~~~~~~~~-~~~~~~~g~~~~~~~~~~~r~~~v~~~pdG~Lyv~~~ 354 (463)
T 2wg3_C 302 N-GNFLTLQQSPVTKQW-QEKPLCLGTSGSCRGYFSGHILGFGEDELGEVYILSS 354 (463)
T ss_dssp T-SCEEEEEC-----CC-EEEEECEEETTSSCSCCCSEEEEEEECTTCCEEEEEE
T ss_pred C-CcEEEEEeCCCCcee-eEEEeecCCcccccccccCcceEEEECCCCCEEEEec
Confidence 6 789999887432111 12222111 11235688999999999999974
|
| >1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A | Back alignment and structure |
|---|
Probab=98.16 E-value=0.00045 Score=61.69 Aligned_cols=232 Identities=9% Similarity=-0.015 Sum_probs=131.0
Q ss_pred cccceEEcCCCC-EEEEEecCCeEEEEEC-CCCCCCccceeeeEEecccCcCCCccceEEEeCCCCeEEEEEeCcCCCcc
Q 020019 46 FRECAKWDDSGR-RFIVSFLDGGIGQVAV-PDDYPPGTVLEEVTLVKDLELTGNGSLGLVLDHPRNRLLVVAADVFGNKY 123 (332)
Q Consensus 46 ~pegia~d~~g~-~~~~~~~~g~I~~vd~-~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~vd~~~g~l~v~~~~~~~~~~ 123 (332)
....++++++++ .+++...++.|..++. .+++. . .+...+. ......+++.+ .+.++.+.. .
T Consensus 58 ~v~~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~-----~--~~~~~~~--~~~v~~l~~~~-~~~l~s~~~------d 121 (342)
T 1yfq_A 58 PLLCCNFIDNTDLQIYVGTVQGEILKVDLIGSPSF-----Q--ALTNNEA--NLGICRICKYG-DDKLIAASW------D 121 (342)
T ss_dssp CEEEEEEEESSSEEEEEEETTSCEEEECSSSSSSE-----E--ECBSCCC--CSCEEEEEEET-TTEEEEEET------T
T ss_pred ceEEEEECCCCCcEEEEEcCCCeEEEEEeccCCce-----E--eccccCC--CCceEEEEeCC-CCEEEEEcC------C
Confidence 556789999999 7777777899999998 75541 1 2221001 12567899998 466665554 3
Q ss_pred ceEEEEECCC---------CcEEEEEecCCCCCCCCCccceEECCCCcEEEEeCCCCeEEEEcCCC--c-eEEEecCCCC
Q 020019 124 SAVAAYDLST---------WNRLFLTQLSGPSDGKSCADDVTVDAEGNAYVTDVTGSKIWKVGVKG--E-FLSIISSPLF 191 (332)
Q Consensus 124 ~~l~~~d~~~---------g~~~~~~~l~~~~~~~~~~ndiavd~dG~lyvtd~~~~~I~~v~~~g--~-~~~~~~~~~~ 191 (332)
+.|..||.++ ++... .+. .......+++.+++ +++ -...+.|..++... + ........
T Consensus 122 ~~i~iwd~~~~~~~~~~~~~~~~~--~~~----~~~~v~~~~~~~~~-l~~-~~~d~~i~i~d~~~~~~~~~~~~~~~-- 191 (342)
T 1yfq_A 122 GLIEVIDPRNYGDGVIAVKNLNSN--NTK----VKNKIFTMDTNSSR-LIV-GMNNSQVQWFRLPLCEDDNGTIEESG-- 191 (342)
T ss_dssp SEEEEECHHHHTTBCEEEEESCSS--SSS----SCCCEEEEEECSSE-EEE-EESTTEEEEEESSCCTTCCCEEEECS--
T ss_pred CeEEEEcccccccccccccCCeee--EEe----eCCceEEEEecCCc-EEE-EeCCCeEEEEECCccccccceeeecC--
Confidence 5688899865 33221 111 12456789999887 444 45567888888654 1 11111110
Q ss_pred CCcccccCccccCeEEEcc-CceEEEEeCCCCeEEEEeCCCC--CCccceeEEEEecCC------CCCCCCeEEEeCCCe
Q 020019 192 TPKEWYKNLVGLNGIVYHP-DGFLIVIHTFSGNLFKIDIVDG--VGEGEEIKLIRVAGG------PLSFGDGLELLSPTK 262 (332)
Q Consensus 192 ~~p~~~~~~~~~nGi~~~~-dG~Lyva~~~~~~i~~id~~~~--~~~~~~~~~v~~~g~------~~~~pdGi~~~~dG~ 262 (332)
.......++++| ++.++++-...+.|..++.+.. .........+..... .......+++.++|+
T Consensus 192 -------~~~~i~~i~~~~~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~ 264 (342)
T 1yfq_A 192 -------LKYQIRDVALLPKEQEGYACSSIDGRVAVEFFDDQGDDYNSSKRFAFRCHRLNLKDTNLAYPVNSIEFSPRHK 264 (342)
T ss_dssp -------CSSCEEEEEECSGGGCEEEEEETTSEEEEEECCTTCCSTTCTTCEEEECCCCCTTCCSSCCCEEEEEECTTTC
T ss_pred -------CCCceeEEEECCCCCCEEEEEecCCcEEEEEEcCCCcccccccceeeecccccccccccceeEEEEEEcCCCC
Confidence 123467899999 9955555556777777666543 100013333432210 012466889999988
Q ss_pred EEEEe-C-CceEEEEcCCCceEEEEEeeecCCCcccceEEEEECCeEEE-EEecCc
Q 020019 263 LVVAG-N-PSARLVESSDGWETAAVVAKFSGPVHRLATAATVKDGRVYL-NHMLGF 315 (332)
Q Consensus 263 l~va~-~-~~~~~v~~~dg~~~~~~~~~~~~~~~~~pt~va~~~g~lyv-~~~~g~ 315 (332)
++++. . +..++....++ +....+....-...++++ .++++++ +...|.
T Consensus 265 ~l~~~~~dg~i~vwd~~~~----~~~~~~~~~h~~~v~~~~-~~~~~l~s~s~Dg~ 315 (342)
T 1yfq_A 265 FLYTAGSDGIISCWNLQTR----KKIKNFAKFNEDSVVKIA-CSDNILCLATSDDT 315 (342)
T ss_dssp CEEEEETTSCEEEEETTTT----EEEEECCCCSSSEEEEEE-ECSSEEEEEEECTH
T ss_pred EEEEecCCceEEEEcCccH----hHhhhhhcccCCCceEec-CCCCeEEEEecCCc
Confidence 66664 3 33454455656 333333321012235566 6665554 555544
|
| >3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A | Back alignment and structure |
|---|
Probab=98.15 E-value=0.00059 Score=67.45 Aligned_cols=191 Identities=18% Similarity=0.184 Sum_probs=108.2
Q ss_pred eEEc--CCCCE-EEEE-ecCCeEEEEECC--C-CCCCccceeeeEEecccCc-CCCccceEEEeCCCCeEEEEEeCcC--
Q 020019 50 AKWD--DSGRR-FIVS-FLDGGIGQVAVP--D-DYPPGTVLEEVTLVKDLEL-TGNGSLGLVLDHPRNRLLVVAADVF-- 119 (332)
Q Consensus 50 ia~d--~~g~~-~~~~-~~~g~I~~vd~~--~-~~~~~~~~~~~~~~~~~~~-~~~~~~gi~vd~~~g~l~v~~~~~~-- 119 (332)
..+. |||+. ++.. ..+.+|+.++.+ + ++. . .+...+.. ......+++++|+..+|+++..+..
T Consensus 82 ~~~~~SPDg~~~la~~~~~~~~l~~~~~~~~g~~~~-----~--~l~~~~~~~~~~~~~~~~~spDg~~l~~~~~~~~~~ 154 (662)
T 3azo_A 82 WAGVPRPAGGPLLVFTHFGDQRLYAFEPDAPGGAVP-----R--PLTPVSAVGGGLRWADPVLLPERGEVWCMAEEFTGE 154 (662)
T ss_dssp EEEECCSSSSCEEEEEBTTTCCEEEECTTSTTCCCC-----E--ECSCCCCSTTCEEEEEEEEETTTTEEEEEEEEECSS
T ss_pred ceeeeecCCCeEEEEEECCCCeEEEEcCCCCCCCCC-----E--eccCCccCCCCccccCcEECCCCCEEEEEEecccCC
Confidence 4354 88876 4444 446789999976 3 432 1 22211110 0124578899998445665553210
Q ss_pred --CCccceEEEEECCC------CcEEEEEecCCCCCCCCCccceEECCCCc-EEEEeCC-------CCeEEEEcCC--C-
Q 020019 120 --GNKYSAVAAYDLST------WNRLFLTQLSGPSDGKSCADDVTVDAEGN-AYVTDVT-------GSKIWKVGVK--G- 180 (332)
Q Consensus 120 --~~~~~~l~~~d~~~------g~~~~~~~l~~~~~~~~~~ndiavd~dG~-lyvtd~~-------~~~I~~v~~~--g- 180 (332)
......|++||.++ ++.. .+.. ........+++.|||+ |+++... ...|+.++.+ |
T Consensus 155 ~~~~~~~~i~~~~~~~~~~~~~~~~~---~l~~--~~~~~~~~~~~SpDG~~la~~~~~~~~~~~~~~~i~~~d~~~~g~ 229 (662)
T 3azo_A 155 GPSDVRRFLAAVPLDGSAAADRSAVR---ELSD--DAHRFVTGPRLSPDGRQAVWLAWDHPRMPWEGTELKTARVTEDGR 229 (662)
T ss_dssp STTCEEEEEEEEETTSTTTTCGGGSE---ESSC--SCSSEECCCEECTTSSEEEEEEECTTCCTTTCEEEEEEEECTTSC
T ss_pred CCCCceeEEEEEECCCCccccCCcee---EEEe--cCCCcccCceECCCCCEEEEEECCCCCCCCCCcEEEEEEECCCCc
Confidence 01235799999987 6653 2310 1124567789999996 6555432 2578888876 4
Q ss_pred --ceEEEecCCCCCCcccccCccccCeEEEccCceEEEEeCCCC--eEEEEeCCCCCCccceeEEEEecCCCCC------
Q 020019 181 --EFLSIISSPLFTPKEWYKNLVGLNGIVYHPDGFLIVIHTFSG--NLFKIDIVDGVGEGEEIKLIRVAGGPLS------ 250 (332)
Q Consensus 181 --~~~~~~~~~~~~~p~~~~~~~~~nGi~~~~dG~Lyva~~~~~--~i~~id~~~~~~~~~~~~~v~~~g~~~~------ 250 (332)
+...+.... ......++|+|||.+|++....+ +||++++++++ .+.+........
T Consensus 230 ~~~~~~l~~~~----------~~~~~~~~~spdg~l~~~~~~~~~~~l~~~~~~~~~-----~~~l~~~~~~~~~p~w~~ 294 (662)
T 3azo_A 230 FADTRTLLGGP----------EEAIAQAEWAPDGSLIVATDRTGWWNLHRVDPATGA-----ATQLCRREEEFAGPLWTP 294 (662)
T ss_dssp EEEEEEEEEET----------TBCEEEEEECTTSCEEEEECTTSSCEEEEECTTTCC-----EEESSCCSSBSSCCCCST
T ss_pred ccccEEeCCCC----------CceEcceEECCCCeEEEEECCCCCeEEEEEECCCCc-----eeecccccccccCccccc
Confidence 333332210 12346789999996666555455 89999987652 222211101111
Q ss_pred CCCeEEEeCCCeEEEEe
Q 020019 251 FGDGLELLSPTKLVVAG 267 (332)
Q Consensus 251 ~pdGi~~~~dG~l~va~ 267 (332)
....+++.++|+++++.
T Consensus 295 ~~~~~~~~~~~~~~~~~ 311 (662)
T 3azo_A 295 GMRWFAPLANGLIAVVH 311 (662)
T ss_dssp TCCSEEECTTSCEEEEE
T ss_pred cCceEeEeCCCEEEEEE
Confidence 13467887888888775
|
| >4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a | Back alignment and structure |
|---|
Probab=98.14 E-value=0.0038 Score=55.40 Aligned_cols=209 Identities=9% Similarity=0.004 Sum_probs=124.9
Q ss_pred EecCCccccceEEcCC-CCEEEEEecCCeEEEEECCCCCCCccceeeeEEecccCcCCCccceEEEeCCCCeEEEEEeCc
Q 020019 40 YHSSSFFRECAKWDDS-GRRFIVSFLDGGIGQVAVPDDYPPGTVLEEVTLVKDLELTGNGSLGLVLDHPRNRLLVVAADV 118 (332)
Q Consensus 40 ~~~~~~~pegia~d~~-g~~~~~~~~~g~I~~vd~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~vd~~~g~l~v~~~~~ 118 (332)
+.+..-....++++|+ ++++++...++.|..++..+.+....... ..+. + -...+..+.+.++ ++++++...
T Consensus 34 L~GH~~~V~~v~~sp~~~~~l~S~s~D~~i~vWd~~~~~~~~~~~~--~~l~--~-h~~~V~~~~~s~d-g~~l~s~~~- 106 (340)
T 4aow_A 34 LKGHNGWVTQIATTPQFPDMILSASRDKTIIMWKLTRDETNYGIPQ--RALR--G-HSHFVSDVVISSD-GQFALSGSW- 106 (340)
T ss_dssp ECCCSSCEEEEEECTTCTTEEEEEETTSCEEEEEECCSSSCSEEEE--EEEC--C-CSSCEEEEEECTT-SSEEEEEET-
T ss_pred ECCccCCEEEEEEeCCCCCEEEEEcCCCeEEEEECCCCCcccceee--EEEe--C-CCCCEEEEEECCC-CCEEEEEcc-
Confidence 3444445678999998 57777777789888888765442100000 1111 0 0125788999997 665544332
Q ss_pred CCCccceEEEEECCCCcEEEEEecCCCCCCCCCccceEECCCCcEEEEeCCCCeEEEEcCCCceEEEecCCCCCCccccc
Q 020019 119 FGNKYSAVAAYDLSTWNRLFLTQLSGPSDGKSCADDVTVDAEGNAYVTDVTGSKIWKVGVKGEFLSIISSPLFTPKEWYK 198 (332)
Q Consensus 119 ~~~~~~~l~~~d~~~g~~~~~~~l~~~~~~~~~~ndiavd~dG~lyvtd~~~~~I~~v~~~g~~~~~~~~~~~~~p~~~~ 198 (332)
.+.+..|+............ ...........++++.+++-+..+.+..++..+..........
T Consensus 107 ----d~~i~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~l~s~s~d~~~~~~d~~~~~~~~~~~~~-------- 169 (340)
T 4aow_A 107 ----DGTLRLWDLTTGTTTRRFVG-----HTKDVLSVAFSSDNRQIVSGSRDKTIKLWNTLGVCKYTVQDES-------- 169 (340)
T ss_dssp ----TSEEEEEETTTTEEEEEEEC-----CSSCEEEEEECTTSSCEEEEETTSCEEEECTTSCEEEEECSSS--------
T ss_pred ----cccceEEeecccceeeeecC-----CCCceeEEEEeecCccceeecCCCeEEEEEeCCCceEEEEecc--------
Confidence 35688899887665544332 1244556778888887777777788888887654332221111
Q ss_pred CccccCeEEEccCc--eEEEEeCCCCeEEEEeCCCCCCccceeEEEEecCCCCCCCCeEEEeCCCeEEEEeC--CceEEE
Q 020019 199 NLVGLNGIVYHPDG--FLIVIHTFSGNLFKIDIVDGVGEGEEIKLIRVAGGPLSFGDGLELLSPTKLVVAGN--PSARLV 274 (332)
Q Consensus 199 ~~~~~nGi~~~~dG--~Lyva~~~~~~i~~id~~~~~~~~~~~~~v~~~g~~~~~pdGi~~~~dG~l~va~~--~~~~~v 274 (332)
.......+++++++ .++++-...+.|..++..+++ .+..+.. .......+++.++|+++++.. ...++.
T Consensus 170 ~~~~v~~~~~~~~~~~~~~~s~~~d~~i~i~d~~~~~----~~~~~~~---h~~~v~~~~~s~~~~~l~s~s~Dg~i~iw 242 (340)
T 4aow_A 170 HSEWVSCVRFSPNSSNPIIVSCGWDKLVKVWNLANCK----LKTNHIG---HTGYLNTVTVSPDGSLCASGGKDGQAMLW 242 (340)
T ss_dssp CSSCEEEEEECSCSSSCEEEEEETTSCEEEEETTTTE----EEEEECC---CSSCEEEEEECTTSSEEEEEETTCEEEEE
T ss_pred ccCcccceEEccCCCCcEEEEEcCCCEEEEEECCCCc----eeeEecC---CCCcEEEEEECCCCCEEEEEeCCCeEEEE
Confidence 11234577888776 566666677888888888762 3332221 223456889999998887753 233333
Q ss_pred EcCCC
Q 020019 275 ESSDG 279 (332)
Q Consensus 275 ~~~dg 279 (332)
....+
T Consensus 243 d~~~~ 247 (340)
T 4aow_A 243 DLNEG 247 (340)
T ss_dssp ETTTT
T ss_pred EeccC
Confidence 44444
|
| >2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B | Back alignment and structure |
|---|
Probab=98.13 E-value=0.0013 Score=61.58 Aligned_cols=189 Identities=8% Similarity=0.053 Sum_probs=118.9
Q ss_pred cccceEEcCC-CCEEEEEecCCeEEEEECCCC--------CCCccceeeeEEecccCcCCCccceEEEeCCCCe-EEEEE
Q 020019 46 FRECAKWDDS-GRRFIVSFLDGGIGQVAVPDD--------YPPGTVLEEVTLVKDLELTGNGSLGLVLDHPRNR-LLVVA 115 (332)
Q Consensus 46 ~pegia~d~~-g~~~~~~~~~g~I~~vd~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~gi~vd~~~g~-l~v~~ 115 (332)
.+..+++.++ ++++++...+|.|..++.... ... ... .+... ...+.+|.++++ +. ++++.
T Consensus 130 ~v~~l~~~p~~~~~lat~~~dg~V~vwd~~~~~~~~~~~~~~~--~~~--~~~~h----~~~v~~l~~~~~-~~~~l~s~ 200 (430)
T 2xyi_A 130 EVNRARYMPQNACVIATKTPSSDVLVFDYTKHPSKPEPSGECQ--PDL--RLRGH----QKEGYGLSWNPN-LNGYLLSA 200 (430)
T ss_dssp CCSEEEEETTEEEEEEEECSSSCEEEEEGGGSCSSCCTTCCCC--CSE--EEECC----SSCCCCEEECTT-STTEEEEE
T ss_pred cEEEEEECCCCCcEEEEECCCCcEEEEECCCcccccCccccCC--CcE--EecCC----CCCeEEEEeCCC-CCCeEEEE
Confidence 5677999998 556666677899999987641 000 011 22211 125688999996 44 44443
Q ss_pred eCcCCCccceEEEEECCCCcE----EE-EEecCCCCCCCCCccceEECC-CCcEEEEeCCCCeEEEEcCCCc----eEEE
Q 020019 116 ADVFGNKYSAVAAYDLSTWNR----LF-LTQLSGPSDGKSCADDVTVDA-EGNAYVTDVTGSKIWKVGVKGE----FLSI 185 (332)
Q Consensus 116 ~~~~~~~~~~l~~~d~~~g~~----~~-~~~l~~~~~~~~~~ndiavd~-dG~lyvtd~~~~~I~~v~~~g~----~~~~ 185 (332)
.. .+.|.+||.+++.. .. ...+. ......+++++.| +++++++....+.|..++.... ....
T Consensus 201 ~~-----dg~i~vwd~~~~~~~~~~~~~~~~~~---~h~~~v~~v~~~p~~~~~l~s~~~dg~i~i~d~~~~~~~~~~~~ 272 (430)
T 2xyi_A 201 SD-----DHTICLWDINATPKEHRVIDAKNIFT---GHTAVVEDVAWHLLHESLFGSVADDQKLMIWDTRNNNTSKPSHT 272 (430)
T ss_dssp CT-----TSCEEEEETTSCCBGGGEEECSEEEC---CCSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCSCSSSCSEE
T ss_pred eC-----CCeEEEEeCCCCCCCCceeccceeec---CCCCCEeeeEEeCCCCCEEEEEeCCCeEEEEECCCCCCCcceeE
Confidence 32 35688999987321 11 11221 1135678899999 4679999888999999887632 1111
Q ss_pred ecCCCCCCcccccCccccCeEEEccCc-eEEEEeCCCCeEEEEeCCCCCCccceeEEEEecCCCCCCCCeEEEeCCCe-E
Q 020019 186 ISSPLFTPKEWYKNLVGLNGIVYHPDG-FLIVIHTFSGNLFKIDIVDGVGEGEEIKLIRVAGGPLSFGDGLELLSPTK-L 263 (332)
Q Consensus 186 ~~~~~~~~p~~~~~~~~~nGi~~~~dG-~Lyva~~~~~~i~~id~~~~~~~~~~~~~v~~~g~~~~~pdGi~~~~dG~-l 263 (332)
+.. ....++.|+|+|++ .++++-...+.|..+++...+ ..+..+.. .......+++.++|+ +
T Consensus 273 ~~~----------~~~~v~~i~~~p~~~~~l~tg~~dg~v~vwd~~~~~---~~~~~~~~---h~~~v~~i~~sp~~~~~ 336 (430)
T 2xyi_A 273 VDA----------HTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLK---LKLHSFES---HKDEIFQVQWSPHNETI 336 (430)
T ss_dssp EEC----------CSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCTT---SCSEEEEC---CSSCEEEEEECSSCTTE
T ss_pred eec----------CCCCeEEEEeCCCCCCEEEEEeCCCeEEEEeCCCCC---CCeEEeec---CCCCEEEEEECCCCCCE
Confidence 111 12357899999999 788888888999999998642 13444442 224566889999874 5
Q ss_pred EEEe
Q 020019 264 VVAG 267 (332)
Q Consensus 264 ~va~ 267 (332)
+++.
T Consensus 337 l~s~ 340 (430)
T 2xyi_A 337 LASS 340 (430)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 6664
|
| >3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.13 E-value=0.00046 Score=61.96 Aligned_cols=118 Identities=11% Similarity=0.063 Sum_probs=76.7
Q ss_pred cCCccccceEEcCC---CCEEEEEecCCeEEEEECCCCCCCccceeeeEEecccCcCCCccceEEEeCCCCeEEEEEeCc
Q 020019 42 SSSFFRECAKWDDS---GRRFIVSFLDGGIGQVAVPDDYPPGTVLEEVTLVKDLELTGNGSLGLVLDHPRNRLLVVAADV 118 (332)
Q Consensus 42 ~~~~~pegia~d~~---g~~~~~~~~~g~I~~vd~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~vd~~~g~l~v~~~~~ 118 (332)
+.......++++++ |+.+++...+|.|..++..+... ... ..+.... .....+++.++ ++.+++...
T Consensus 37 ~h~~~v~~~~~~~~~~~g~~l~~~~~dg~i~iw~~~~~~~---~~~-~~~~~h~----~~v~~~~~~~~-~~~l~s~~~- 106 (368)
T 3mmy_A 37 SPDDSIGCLSFSPPTLPGNFLIAGSWANDVRCWEVQDSGQ---TIP-KAQQMHT----GPVLDVCWSDD-GSKVFTASC- 106 (368)
T ss_dssp CCSSCEEEEEECCTTSSSEEEEEEETTSEEEEEEECTTSC---EEE-EEEEECS----SCEEEEEECTT-SSEEEEEET-
T ss_pred CCCCceEEEEEcCCCCCceEEEEECCCCcEEEEEcCCCCc---eeE-EEecccc----CCEEEEEECcC-CCEEEEEcC-
Confidence 33346678999999 57777777789999998875231 111 1222111 25789999996 554444321
Q ss_pred CCCccceEEEEECCCCcEEEEEecCCCCCCCCCccceEE--CCCCcEEEEeCCCCeEEEEcCC
Q 020019 119 FGNKYSAVAAYDLSTWNRLFLTQLSGPSDGKSCADDVTV--DAEGNAYVTDVTGSKIWKVGVK 179 (332)
Q Consensus 119 ~~~~~~~l~~~d~~~g~~~~~~~l~~~~~~~~~~ndiav--d~dG~lyvtd~~~~~I~~v~~~ 179 (332)
.+.+..||.++++....... ......+++ .++|+++++-+..+.|..++..
T Consensus 107 ----dg~v~iwd~~~~~~~~~~~~------~~~v~~~~~~~~~~~~~l~~~~~dg~i~vwd~~ 159 (368)
T 3mmy_A 107 ----DKTAKMWDLSSNQAIQIAQH------DAPVKTIHWIKAPNYSCVMTGSWDKTLKFWDTR 159 (368)
T ss_dssp ----TSEEEEEETTTTEEEEEEEC------SSCEEEEEEEECSSCEEEEEEETTSEEEEECSS
T ss_pred ----CCcEEEEEcCCCCceeeccc------cCceEEEEEEeCCCCCEEEEccCCCcEEEEECC
Confidence 35789999998876654332 244667888 8888877776667777777643
|
| >2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A | Back alignment and structure |
|---|
Probab=98.12 E-value=0.0037 Score=55.27 Aligned_cols=193 Identities=13% Similarity=0.088 Sum_probs=112.2
Q ss_pred cccceEEcCCCCEEEEEecCCeEEEEECCCCCCCccceeeeEEecccCcCCCccceEEEeCC-CCeEEEEEeCcCCCccc
Q 020019 46 FRECAKWDDSGRRFIVSFLDGGIGQVAVPDDYPPGTVLEEVTLVKDLELTGNGSLGLVLDHP-RNRLLVVAADVFGNKYS 124 (332)
Q Consensus 46 ~pegia~d~~g~~~~~~~~~g~I~~vd~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~vd~~-~g~l~v~~~~~~~~~~~ 124 (332)
....++++++|+.+++...++.|..++..+.... ... ++.... .....+++.++ +++++++... .+
T Consensus 11 ~V~~~~~s~~g~~las~s~D~~v~iw~~~~~~~~--~~~--~l~gH~----~~V~~v~~s~~~~g~~l~s~s~-----D~ 77 (297)
T 2pm7_B 11 MIHDAVMDYYGKRMATCSSDKTIKIFEVEGETHK--LID--TLTGHE----GPVWRVDWAHPKFGTILASCSY-----DG 77 (297)
T ss_dssp CEEEEEECTTSSEEEEEETTSCEEEEEBCSSCBC--CCE--EECCCS----SCEEEEEECCGGGCSEEEEEET-----TT
T ss_pred ceEEEEECCCCCEEEEEeCCCEEEEEecCCCCcE--EEE--EEcccc----CCeEEEEecCCCcCCEEEEEcC-----CC
Confidence 4467899999998888877899998887643210 011 222111 24678888642 2554544432 35
Q ss_pred eEEEEECCCCcEEEEEecCCCCCCCCCccceEECCC--CcEEEEeCCCCeEEEEcCCCc--e-EEEecCCCCCCcccccC
Q 020019 125 AVAAYDLSTWNRLFLTQLSGPSDGKSCADDVTVDAE--GNAYVTDVTGSKIWKVGVKGE--F-LSIISSPLFTPKEWYKN 199 (332)
Q Consensus 125 ~l~~~d~~~g~~~~~~~l~~~~~~~~~~ndiavd~d--G~lyvtd~~~~~I~~v~~~g~--~-~~~~~~~~~~~p~~~~~ 199 (332)
.+.+||.++++......+.. .....+.+++.|+ |.++++-+..+.|..++.... . ...+.. .
T Consensus 78 ~v~iWd~~~~~~~~~~~~~~---h~~~v~~v~~~p~~~g~~l~s~s~d~~v~~wd~~~~~~~~~~~~~~----------h 144 (297)
T 2pm7_B 78 KVMIWKEENGRWSQIAVHAV---HSASVNSVQWAPHEYGPMLLVASSDGKVSVVEFKENGTTSPIIIDA----------H 144 (297)
T ss_dssp EEEEEEBSSSCBCCCEEECC---CSSCEEEEEECCGGGCSEEEEEETTSEEEEEEBCSSSCBCCEEEEC----------C
T ss_pred EEEEEEcCCCceEEEEEeec---CCCceeEEEeCcCCCCcEEEEEECCCcEEEEEecCCCceeeeeeec----------c
Confidence 78899998775322222321 1245778999997 778888777888877775421 1 111110 1
Q ss_pred ccccCeEEEccC-------------ceEEEEeCCCCeEEEEeCCCCCCccceeEEEEecCCCCCCCCeEEEeCCC---eE
Q 020019 200 LVGLNGIVYHPD-------------GFLIVIHTFSGNLFKIDIVDGVGEGEEIKLIRVAGGPLSFGDGLELLSPT---KL 263 (332)
Q Consensus 200 ~~~~nGi~~~~d-------------G~Lyva~~~~~~i~~id~~~~~~~~~~~~~v~~~g~~~~~pdGi~~~~dG---~l 263 (332)
....+.++|+|+ +.++++-...++|..++..++.. .......+.+ .......+++.|++ ++
T Consensus 145 ~~~v~~~~~~p~~~~~~~~~~~~~~~~~l~sgs~D~~v~lwd~~~~~~--~~~~~~~l~~-H~~~V~~v~~sp~~~~~~~ 221 (297)
T 2pm7_B 145 AIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQ--TYVLESTLEG-HSDWVRDVAWSPTVLLRSY 221 (297)
T ss_dssp SSCEEEEEECCCC------------CCEEEEEETTSCEEEEEEETTTT--EEEEEEEECC-CSSCEEEEEECCCCSSSEE
T ss_pred cCccceEeecCCcccccccCCCCCCcceEEEEcCCCcEEEEEEcCCCc--eEEEEEEecC-CCCceEEEEECCCCCCceE
Confidence 123567788876 44566666677777677665421 0111112332 33456788898874 66
Q ss_pred EEEe
Q 020019 264 VVAG 267 (332)
Q Consensus 264 ~va~ 267 (332)
+++.
T Consensus 222 las~ 225 (297)
T 2pm7_B 222 MASV 225 (297)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 6664
|
| >2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.11 E-value=0.0019 Score=66.82 Aligned_cols=202 Identities=11% Similarity=0.022 Sum_probs=127.7
Q ss_pred CccccceEEcCCCCEEEEEecCCeEEEEECCCCCCCccceeeeEEecccCcCCCccceEEEeCCCCeEEEEEeCcCCCcc
Q 020019 44 SFFRECAKWDDSGRRFIVSFLDGGIGQVAVPDDYPPGTVLEEVTLVKDLELTGNGSLGLVLDHPRNRLLVVAADVFGNKY 123 (332)
Q Consensus 44 ~~~pegia~d~~g~~~~~~~~~g~I~~vd~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~vd~~~g~l~v~~~~~~~~~~ 123 (332)
......++++++|+++.+...+|.|..++..+.+. ... ... ......+++.+ ...|..+.. .
T Consensus 17 ~~~V~~lafspdg~~lAsgs~Dg~I~lw~~~~~~~--------~~~-~~~--~~~V~~l~fsp-g~~L~S~s~------D 78 (902)
T 2oaj_A 17 SSKPIAAAFDFTQNLLAIATVTGEVHIYGQQQVEV--------VIK-LED--RSAIKEMRFVK-GIYLVVINA------K 78 (902)
T ss_dssp SSCEEEEEEETTTTEEEEEETTSEEEEECSTTCEE--------EEE-CSS--CCCEEEEEEET-TTEEEEEET------T
T ss_pred CCCcEEEEECCCCCEEEEEeCCCEEEEEeCCCcEE--------EEE-cCC--CCCEEEEEEcC-CCEEEEEEC------c
Confidence 33567899999999888877889999998764431 111 111 12578999998 233444433 3
Q ss_pred ceEEEEECCCCcEEEEEecCCCCCCCCCccceEECCCCcEEEEeCCCCeEEEEcCCCceEE-EecC------CCCCCccc
Q 020019 124 SAVAAYDLSTWNRLFLTQLSGPSDGKSCADDVTVDAEGNAYVTDVTGSKIWKVGVKGEFLS-IISS------PLFTPKEW 196 (332)
Q Consensus 124 ~~l~~~d~~~g~~~~~~~l~~~~~~~~~~ndiavd~dG~lyvtd~~~~~I~~v~~~g~~~~-~~~~------~~~~~p~~ 196 (332)
+.|.+||.++++....+.. ......++++|+|+..++-+..+.|..+|.++.... +... ..+.
T Consensus 79 ~~v~lWd~~~~~~~~~~~~------~~~V~~v~~sp~g~~l~sgs~dg~V~lwd~~~~~~~~~~i~~~~~~~~~~~---- 148 (902)
T 2oaj_A 79 DTVYVLSLYSQKVLTTVFV------PGKITSIDTDASLDWMLIGLQNGSMIVYDIDRDQLSSFKLDNLQKSSFFPA---- 148 (902)
T ss_dssp CEEEEEETTTCSEEEEEEC------SSCEEEEECCTTCSEEEEEETTSCEEEEETTTTEEEEEEECCHHHHHTCSS----
T ss_pred CeEEEEECCCCcEEEEEcC------CCCEEEEEECCCCCEEEEEcCCCcEEEEECCCCccccceeccccccccccc----
Confidence 5789999998887655542 134678999999987777777888988987744321 1100 0110
Q ss_pred ccCccccCeEEEccCc-eEEEEeCCCCeEEEEeCCCCCCccceeEEEEec---CCC------------CCCCCeEEEeCC
Q 020019 197 YKNLVGLNGIVYHPDG-FLIVIHTFSGNLFKIDIVDGVGEGEEIKLIRVA---GGP------------LSFGDGLELLSP 260 (332)
Q Consensus 197 ~~~~~~~nGi~~~~dG-~Lyva~~~~~~i~~id~~~~~~~~~~~~~v~~~---g~~------------~~~pdGi~~~~d 260 (332)
........|+|+|++ .++++-...+.| .+|+.+++ .+..+... +.. ......+++.++
T Consensus 149 -~h~~~V~sl~~sp~~~~~l~~g~~dg~v-lWd~~~~~----~~~~~~~~~~~g~~~~~~~~~~~~~h~~~V~~v~fspd 222 (902)
T 2oaj_A 149 -ARLSPIVSIQWNPRDIGTVLISYEYVTL-TYSLVENE----IKQSFIYELPPFAPGGDFSEKTNEKRTPKVIQSLYHPN 222 (902)
T ss_dssp -SCCCCCCEEEEETTEEEEEEEECSSCEE-EEETTTTE----EEEEECCCBCTTCCCSTTCCCTTSCBCCCEEEEEECTT
T ss_pred -cCCCCeEEEEEccCCCCEEEEEeCCCcE-EEECCCCc----eEEEEecccCCcCCCcccccccccccCCCeEEEEEcCC
Confidence 012346899999975 555556677888 89988762 33333321 000 123567899999
Q ss_pred CeEEEEeC--CceEEEEcCCC
Q 020019 261 TKLVVAGN--PSARLVESSDG 279 (332)
Q Consensus 261 G~l~va~~--~~~~~v~~~dg 279 (332)
|+++++.. ...++-...+|
T Consensus 223 g~~lasgs~Dg~i~lWd~~~g 243 (902)
T 2oaj_A 223 SLHIITIHEDNSLVFWDANSG 243 (902)
T ss_dssp SSEEEEEETTCCEEEEETTTC
T ss_pred CCEEEEEECCCeEEEEECCCC
Confidence 99888753 33444455555
|
| >3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.11 E-value=0.00016 Score=64.87 Aligned_cols=192 Identities=11% Similarity=0.078 Sum_probs=110.3
Q ss_pred EEcCCCCEEEEEecCCeEEEEECCCCCCCccceeeeEEecccCcCCCccceEE----EeCCCCeEEEEEeCcCCCccceE
Q 020019 51 KWDDSGRRFIVSFLDGGIGQVAVPDDYPPGTVLEEVTLVKDLELTGNGSLGLV----LDHPRNRLLVVAADVFGNKYSAV 126 (332)
Q Consensus 51 a~d~~g~~~~~~~~~g~I~~vd~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~----vd~~~g~l~v~~~~~~~~~~~~l 126 (332)
+++++++.+++...++.|..++..+++.. .. .+....+........+. ++++ ++++++... .+.+
T Consensus 124 ~~s~~~~~l~~~~~d~~i~vwd~~~~~~~---~~--~~~~~~~~~~~~v~~~~~~~~~~~~-~~~l~~~~~-----d~~i 192 (357)
T 3i2n_A 124 GIGEGAPEIVTGSRDGTVKVWDPRQKDDP---VA--NMEPVQGENKRDCWTVAFGNAYNQE-ERVVCAGYD-----NGDI 192 (357)
T ss_dssp GCC-CCCEEEEEETTSCEEEECTTSCSSC---SE--EECCCTTSCCCCEEEEEEECCCC-C-CCEEEEEET-----TSEE
T ss_pred ccCCCccEEEEEeCCCeEEEEeCCCCCCc---ce--eccccCCCCCCceEEEEEEeccCCC-CCEEEEEcc-----CCeE
Confidence 55788988887777899999998766521 11 22211111112345565 5565 554554432 3579
Q ss_pred EEEECCCCcEEEEEecCCCCCCCCCccceEECC---CCcEEEEeCCCCeEEEEcCCCc-eEEEecCCCCCCcccccCccc
Q 020019 127 AAYDLSTWNRLFLTQLSGPSDGKSCADDVTVDA---EGNAYVTDVTGSKIWKVGVKGE-FLSIISSPLFTPKEWYKNLVG 202 (332)
Q Consensus 127 ~~~d~~~g~~~~~~~l~~~~~~~~~~ndiavd~---dG~lyvtd~~~~~I~~v~~~g~-~~~~~~~~~~~~p~~~~~~~~ 202 (332)
..||.++++....... ......+++.| +++.+++-...+.|..++.... ....+....+ ......
T Consensus 193 ~i~d~~~~~~~~~~~~------~~~v~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~-----~~~~~~ 261 (357)
T 3i2n_A 193 KLFDLRNMALRWETNI------KNGVCSLEFDRKDISMNKLVATSLEGKFHVFDMRTQHPTKGFASVSE-----KAHKST 261 (357)
T ss_dssp EEEETTTTEEEEEEEC------SSCEEEEEESCSSSSCCEEEEEESTTEEEEEEEEEEETTTEEEEEEE-----ECCSSC
T ss_pred EEEECccCceeeecCC------CCceEEEEcCCCCCCCCEEEEECCCCeEEEEeCcCCCcccceeeecc-----CCCcCC
Confidence 9999998877544333 24567899999 8887777777888888775421 1000000000 001234
Q ss_pred cCeEEEccCce-EEEEeCCCCeEEEEeCCCCCCc------cc------eeEEE-EecCCCCCCCCeEEEeCCCeEEE
Q 020019 203 LNGIVYHPDGF-LIVIHTFSGNLFKIDIVDGVGE------GE------EIKLI-RVAGGPLSFGDGLELLSPTKLVV 265 (332)
Q Consensus 203 ~nGi~~~~dG~-Lyva~~~~~~i~~id~~~~~~~------~~------~~~~v-~~~g~~~~~pdGi~~~~dG~l~v 265 (332)
...++++|+|. ++++-...+.|..+++..+... +. ..+.+ ... ........+++.++|++++
T Consensus 262 v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~-~~~~~v~~~~~s~~~~~l~ 337 (357)
T 3i2n_A 262 VWQVRHLPQNRELFLTAGGAGGLHLWKYEYPIQRSKKDSEGIEMGVAGSVSLLQNVT-LSTQPISSLDWSPDKRGLC 337 (357)
T ss_dssp EEEEEEETTEEEEEEEEETTSEEEEEEEECCSCC--CCTTSCCCCCCCEEEEEEEEE-CCSSCEEEEEECSSSTTEE
T ss_pred EEEEEECCCCCcEEEEEeCCCcEEEeecCCCcccccccCCCCccccccccceeeccc-cCCCCeeEEEEcCCCCeEE
Confidence 67899999994 7777777888877776643210 00 00111 122 1223456788888887555
|
| >3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.10 E-value=0.0011 Score=61.56 Aligned_cols=175 Identities=7% Similarity=0.011 Sum_probs=102.1
Q ss_pred ccccceEEcCCCCEEEEEecCCeEEEEECCCCCCCccceeeeEEeccc-CcC--CCccceEEEeCCCC-eEEEEEeCcCC
Q 020019 45 FFRECAKWDDSGRRFIVSFLDGGIGQVAVPDDYPPGTVLEEVTLVKDL-ELT--GNGSLGLVLDHPRN-RLLVVAADVFG 120 (332)
Q Consensus 45 ~~pegia~d~~g~~~~~~~~~g~I~~vd~~~~~~~~~~~~~~~~~~~~-~~~--~~~~~gi~vd~~~g-~l~v~~~~~~~ 120 (332)
.....++++++++.+++. .++.|..++...... ... .+...+ ... ......++++++ + .++++...
T Consensus 178 ~~v~~~~~~~~~~~l~s~-~d~~i~iwd~~~~~~---~~~--~~~~~~~~~~~~~~~v~~~~~~p~-~~~~l~s~~~--- 247 (447)
T 3dw8_B 178 YHINSISINSDYETYLSA-DDLRINLWHLEITDR---SFN--IVDIKPANMEELTEVITAAEFHPN-SCNTFVYSSS--- 247 (447)
T ss_dssp SCCCEEEECTTSSEEEEE-CSSEEEEEETTEEEE---EEE--EEECCCSSGGGCCCCEEEEEECSS-CTTEEEEEET---
T ss_pred cceEEEEEcCCCCEEEEe-CCCeEEEEECCCCCc---eee--eeecccccccccCcceEEEEECCC-CCcEEEEEeC---
Confidence 356789999999988887 789999999863321 011 110011 111 125789999997 5 55554432
Q ss_pred CccceEEEEECCCCcE----EEEEecCC-CCCC------CCCccceEECCCCcEEEEeCCCCeEEEEcCC--CceEEEec
Q 020019 121 NKYSAVAAYDLSTWNR----LFLTQLSG-PSDG------KSCADDVTVDAEGNAYVTDVTGSKIWKVGVK--GEFLSIIS 187 (332)
Q Consensus 121 ~~~~~l~~~d~~~g~~----~~~~~l~~-~~~~------~~~~ndiavd~dG~lyvtd~~~~~I~~v~~~--g~~~~~~~ 187 (332)
.+.|..||.++++. ...+.... +... ....+.+++.|+|+++++-+. +.|..++.. ++....+.
T Consensus 248 --dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~-~~v~iwd~~~~~~~~~~~~ 324 (447)
T 3dw8_B 248 --KGTIRLCDMRASALCDRHSKLFEEPEDPSNRSFFSEIISSISDVKFSHSGRYMMTRDY-LSVKVWDLNMENRPVETYQ 324 (447)
T ss_dssp --TSCEEEEETTTCSSSCTTCEEECCC-----CCHHHHHTTCEEEEEECTTSSEEEEEES-SEEEEEETTCCSSCSCCEE
T ss_pred --CCeEEEEECcCCccccceeeEeccCCCccccccccccCceEEEEEECCCCCEEEEeeC-CeEEEEeCCCCccccceee
Confidence 35689999988774 33332210 0000 025778999999987777666 888888865 33221111
Q ss_pred CCCCCCcc-----cccCccccCeEEEccCceEEEEeCCCCeEEEEeCCCC
Q 020019 188 SPLFTPKE-----WYKNLVGLNGIVYHPDGFLIVIHTFSGNLFKIDIVDG 232 (332)
Q Consensus 188 ~~~~~~p~-----~~~~~~~~nGi~~~~dG~Lyva~~~~~~i~~id~~~~ 232 (332)
........ ..........++|+|+|..+++-...+.|..++..++
T Consensus 325 ~~~~~~~~l~~~~~~~~i~~~~~~~~s~~~~~l~s~s~dg~v~iwd~~~~ 374 (447)
T 3dw8_B 325 VHEYLRSKLCSLYENDCIFDKFECCWNGSDSVVMTGSYNNFFRMFDRNTK 374 (447)
T ss_dssp SCGGGTTTHHHHHHTSGGGCCCCEEECTTSSEEEEECSTTEEEEEETTTC
T ss_pred ccccccccccccccccccccceEEEECCCCCEEEEeccCCEEEEEEcCCC
Confidence 11000000 0000011234999999954566677889999998876
|
| >1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24 | Back alignment and structure |
|---|
Probab=98.10 E-value=0.0005 Score=68.60 Aligned_cols=153 Identities=8% Similarity=-0.007 Sum_probs=85.2
Q ss_pred ccceEEEeCCCCeEEEEEeCcCCCccceEEEEECCCCcEEEEEecCCCCCCCCCccceEECCCCc-EEEE-eCCCC----
Q 020019 98 GSLGLVLDHPRNRLLVVAADVFGNKYSAVAAYDLSTWNRLFLTQLSGPSDGKSCADDVTVDAEGN-AYVT-DVTGS---- 171 (332)
Q Consensus 98 ~~~gi~vd~~~g~l~v~~~~~~~~~~~~l~~~d~~~g~~~~~~~l~~~~~~~~~~ndiavd~dG~-lyvt-d~~~~---- 171 (332)
....+.+.|+ |++++...... .....|+.||.++++............-...+..+++.|||+ |++. ....+
T Consensus 256 ~~~~~~~SpD-g~~l~~~~~~~-~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~ 333 (723)
T 1xfd_A 256 YITMVKWATS-TKVAVTWLNRA-QNVSILTLCDATTGVCTKKHEDESEAWLHRQNEEPVFSKDGRKFFFIRAIPQGGRGK 333 (723)
T ss_dssp EEEEEEESSS-SEEEEEEEETT-SCEEEEEEEETTTCCEEEEEEEECSSCCCCCCCCCEECTTSCSEEEEEEECCSSSSC
T ss_pred eeEEEEEeCC-CeEEEEEEcCC-CCeEEEEEEeCCCCcceEEEEeccCCEEeccCCCceEcCCCCeEEEEEecccCCCcc
Confidence 3467899997 87654432211 124578899999988655443211010001134789999996 6654 44444
Q ss_pred --eEEEEc-CCCce---EEEecCCCCCCcccccCccccCeEEEccCc-eEEEEeCC----CCeEEEEeCCCCCCccceeE
Q 020019 172 --KIWKVG-VKGEF---LSIISSPLFTPKEWYKNLVGLNGIVYHPDG-FLIVIHTF----SGNLFKIDIVDGVGEGEEIK 240 (332)
Q Consensus 172 --~I~~v~-~~g~~---~~~~~~~~~~~p~~~~~~~~~nGi~~~~dG-~Lyva~~~----~~~i~~id~~~~~~~~~~~~ 240 (332)
.|+.++ .++.. ...+..... .....++|+||| .||++... ..+||+++..++. ...
T Consensus 334 ~~~l~~~d~~~~~~~~~~~~l~~~~~---------~~~~~~~~spdg~~l~~~~~~~~~~~~~l~~~~~~~~~----~~~ 400 (723)
T 1xfd_A 334 FYHITVSSSQPNSSNDNIQSITSGDW---------DVTKILAYDEKGNKIYFLSTEDLPRRRQLYSANTVGNF----NRQ 400 (723)
T ss_dssp EEEEEEECSSCCSSSCCCCBSCCSSS---------CEEEEEEEETTTTEEEEEESSSCTTCCEEEEECSSTTC----CCB
T ss_pred eeEEEEEeccCCCCccceeEeecCCe---------EEEeeeEEcCCCCEEEEEEcCCCCcceEEEEEeCCCCC----Ccc
Confidence 788998 44332 221111100 111236899999 88876553 3568888876431 111
Q ss_pred EEEecCC--CCCCCCeEEEeCCCeEEEEe
Q 020019 241 LIRVAGG--PLSFGDGLELLSPTKLVVAG 267 (332)
Q Consensus 241 ~v~~~g~--~~~~pdGi~~~~dG~l~va~ 267 (332)
.+.+. +......+++++||+.++..
T Consensus 401 --~l~~~~~~~~~~~~~~~spdg~~l~~~ 427 (723)
T 1xfd_A 401 --CLSCDLVENCTYFSASFSHSMDFFLLK 427 (723)
T ss_dssp --CSSTTSSSSCCCCEEEECTTSSEEEEE
T ss_pred --eecccccCCCCeEEEEECCCCCEEEEE
Confidence 12110 11335678999998866653
|
| >3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.09 E-value=0.00041 Score=70.26 Aligned_cols=191 Identities=13% Similarity=0.089 Sum_probs=117.3
Q ss_pred cccceEEcCCCCEEEEEecCCeEEEEECCCCCCCccceeeeEEecccCcCCCccceEEEeCCC-Ce-EEEEEeCcCCCcc
Q 020019 46 FRECAKWDDSGRRFIVSFLDGGIGQVAVPDDYPPGTVLEEVTLVKDLELTGNGSLGLVLDHPR-NR-LLVVAADVFGNKY 123 (332)
Q Consensus 46 ~pegia~d~~g~~~~~~~~~g~I~~vd~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~vd~~~-g~-l~v~~~~~~~~~~ 123 (332)
....++++++|+.+++...+|.|..++..++.. +...... + -......+.+.++. ++ ++.+.. .
T Consensus 11 ~V~~l~~s~dg~~latg~~dg~I~vwd~~~~~~-----~~~~~l~--~-h~~~V~~l~~s~~~~~~~l~s~s~------D 76 (753)
T 3jro_A 11 LIHDAVLDYYGKRLATCSSDKTIKIFEVEGETH-----KLIDTLT--G-HEGPVWRVDWAHPKFGTILASCSY------D 76 (753)
T ss_dssp CEEEECCCSSSCCEEEEETTTEEEEEEEETTEE-----EEEEEEC--C-CSSCEEEEEECCTTSCSEEEEEET------T
T ss_pred eeEEEEECCCCCeEEEEECCCcEEEEecCCCCC-----ccceecc--C-CcCceEEEEecCCCCCCEEEEEeC------C
Confidence 456788999999888777789998888764321 1011111 1 01256789987641 44 444433 3
Q ss_pred ceEEEEECCCCcEEEEEecCCCCCCCCCccceEECCC--CcEEEEeCCCCeEEEEcCCCc---eEEEecCCCCCCccccc
Q 020019 124 SAVAAYDLSTWNRLFLTQLSGPSDGKSCADDVTVDAE--GNAYVTDVTGSKIWKVGVKGE---FLSIISSPLFTPKEWYK 198 (332)
Q Consensus 124 ~~l~~~d~~~g~~~~~~~l~~~~~~~~~~ndiavd~d--G~lyvtd~~~~~I~~v~~~g~---~~~~~~~~~~~~p~~~~ 198 (332)
+.|..||.++++......+.. .......+++.|+ |+++++-+..+.|..++.... .......
T Consensus 77 g~I~vwd~~~~~~~~~~~~~~---h~~~V~~v~~sp~~~~~~l~sgs~dg~I~vwdl~~~~~~~~~~~~~---------- 143 (753)
T 3jro_A 77 GKVLIWKEENGRWSQIAVHAV---HSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGTTSPIIIDA---------- 143 (753)
T ss_dssp SCEEEEEEETTEEEEEEEECC---CSSCEEEEEECCGGGCSEEEEEETTSEEEEEECCSSSCCCCEEEEC----------
T ss_pred CeEEEEECCCCcccccccccC---CCCCeEEEEECCCCCCCEEEEEeCCCcEEEEEeecCCCcceeEeec----------
Confidence 568899998876444344421 1356788999999 888888888898888886532 1111111
Q ss_pred CccccCeEEEcc-------------CceEEEEeCCCCeEEEEeCCCCCCccceeEEE-EecCCCCCCCCeEEEeCC---C
Q 020019 199 NLVGLNGIVYHP-------------DGFLIVIHTFSGNLFKIDIVDGVGEGEEIKLI-RVAGGPLSFGDGLELLSP---T 261 (332)
Q Consensus 199 ~~~~~nGi~~~~-------------dG~Lyva~~~~~~i~~id~~~~~~~~~~~~~v-~~~g~~~~~pdGi~~~~d---G 261 (332)
.......++++| ++.++++-...+.|..++..++.. ..... ... ........+++.++ |
T Consensus 144 ~~~~v~~l~~~p~~~~~~~~~~~~~d~~~l~sgs~dg~I~iwd~~~~~~---~~~~~~~~~-~h~~~V~~l~~sp~~~~~ 219 (753)
T 3jro_A 144 HAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQ---TYVLESTLE-GHSDWVRDVAWSPTVLLR 219 (753)
T ss_dssp CSSCEEEEEECCCC---------CGGGCCEEEEETTSCEEEEEEETTTT---EEEEEEEEC-CCSSCEEEEEECCCCSSS
T ss_pred CCCceEEEEecCcccccccccccCCCCCEEEEEECCCeEEEEeccCCcc---cceeeeeec-CCCCcEEEEEeccCCCCC
Confidence 112456888888 575555555677788787775421 11111 222 12345678999998 8
Q ss_pred eEEEEe
Q 020019 262 KLVVAG 267 (332)
Q Consensus 262 ~l~va~ 267 (332)
+++++.
T Consensus 220 ~~l~s~ 225 (753)
T 3jro_A 220 SYLASV 225 (753)
T ss_dssp EEEEEE
T ss_pred CEEEEE
Confidence 877775
|
| >3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.09 E-value=0.0011 Score=59.29 Aligned_cols=193 Identities=10% Similarity=0.029 Sum_probs=111.4
Q ss_pred ecCCccccceEEcCCCCEEEEE-ec---CCeEEEEECCCCCCCccceeeeEEecccCcCCCccceEEEeCCC--Ce-EEE
Q 020019 41 HSSSFFRECAKWDDSGRRFIVS-FL---DGGIGQVAVPDDYPPGTVLEEVTLVKDLELTGNGSLGLVLDHPR--NR-LLV 113 (332)
Q Consensus 41 ~~~~~~pegia~d~~g~~~~~~-~~---~g~I~~vd~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~vd~~~--g~-l~v 113 (332)
.+.......+++++++..+++. .. ++.|..++..+++. .. ....... .....+++.++. +. |+.
T Consensus 15 ~~h~~~v~~~~~~p~~~~l~~~~s~~~~d~~v~iw~~~~~~~----~~-~~~~~~~----~~v~~~~~~~~~~~~~~l~~ 85 (357)
T 3i2n_A 15 KGFNYTVFDCKWVPCSAKFVTMGNFARGTGVIQLYEIQHGDL----KL-LREIEKA----KPIKCGTFGATSLQQRYLAT 85 (357)
T ss_dssp EECSSCEEEEEECTTSSEEEEEEC--CCCEEEEEEEECSSSE----EE-EEEEEES----SCEEEEECTTCCTTTCCEEE
T ss_pred cCCCCceEEEEEcCCCceEEEecCccCCCcEEEEEeCCCCcc----cc-eeeeccc----CcEEEEEEcCCCCCCceEEE
Confidence 3444466789999999766544 43 78899998876652 11 0111111 256788998862 34 444
Q ss_pred EEeCcCCCccceEEEEECCCCc-EEEEEecCCCCCCCCCccce------EECCCCcEEEEeCCCCeEEEEcCCC-c-eEE
Q 020019 114 VAADVFGNKYSAVAAYDLSTWN-RLFLTQLSGPSDGKSCADDV------TVDAEGNAYVTDVTGSKIWKVGVKG-E-FLS 184 (332)
Q Consensus 114 ~~~~~~~~~~~~l~~~d~~~g~-~~~~~~l~~~~~~~~~~ndi------avd~dG~lyvtd~~~~~I~~v~~~g-~-~~~ 184 (332)
+.. .+.+..||.++++ ......- . ......+ ++.++|+.+++-+..+.|..++... + ...
T Consensus 86 ~~~------dg~i~iwd~~~~~~~~~~~~~--~---~~~v~~~~~~~~~~~s~~~~~l~~~~~d~~i~vwd~~~~~~~~~ 154 (357)
T 3i2n_A 86 GDF------GGNLHIWNLEAPEMPVYSVKG--H---KEIINAIDGIGGLGIGEGAPEIVTGSRDGTVKVWDPRQKDDPVA 154 (357)
T ss_dssp EET------TSCEEEECTTSCSSCSEEECC--C---SSCEEEEEEESGGGCC-CCCEEEEEETTSCEEEECTTSCSSCSE
T ss_pred ecC------CCeEEEEeCCCCCccEEEEEe--c---ccceEEEeeccccccCCCccEEEEEeCCCeEEEEeCCCCCCcce
Confidence 433 3568899998876 4332221 1 1233344 5678898888878888888888763 2 222
Q ss_pred EecCCCCCCcccccCccccCeEE----EccCceEEEEeCCCCeEEEEeCCCCCCccceeEEEEecCCCCCCCCeEEEeC-
Q 020019 185 IISSPLFTPKEWYKNLVGLNGIV----YHPDGFLIVIHTFSGNLFKIDIVDGVGEGEEIKLIRVAGGPLSFGDGLELLS- 259 (332)
Q Consensus 185 ~~~~~~~~~p~~~~~~~~~nGi~----~~~dG~Lyva~~~~~~i~~id~~~~~~~~~~~~~v~~~g~~~~~pdGi~~~~- 259 (332)
.+...... .......++ +++++.++++-...+.|..+++.+++ ....... ......+++.+
T Consensus 155 ~~~~~~~~------~~~~v~~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~----~~~~~~~----~~~v~~~~~~~~ 220 (357)
T 3i2n_A 155 NMEPVQGE------NKRDCWTVAFGNAYNQEERVVCAGYDNGDIKLFDLRNMA----LRWETNI----KNGVCSLEFDRK 220 (357)
T ss_dssp EECCCTTS------CCCCEEEEEEECCCC-CCCEEEEEETTSEEEEEETTTTE----EEEEEEC----SSCEEEEEESCS
T ss_pred eccccCCC------CCCceEEEEEEeccCCCCCEEEEEccCCeEEEEECccCc----eeeecCC----CCceEEEEcCCC
Confidence 22111110 011234555 67899555555667899999998762 2222222 23466888887
Q ss_pred --CCeEEEEe
Q 020019 260 --PTKLVVAG 267 (332)
Q Consensus 260 --dG~l~va~ 267 (332)
+++.+++.
T Consensus 221 ~~~~~~l~~~ 230 (357)
T 3i2n_A 221 DISMNKLVAT 230 (357)
T ss_dssp SSSCCEEEEE
T ss_pred CCCCCEEEEE
Confidence 76665554
|
| >3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.08 E-value=0.00026 Score=64.02 Aligned_cols=196 Identities=8% Similarity=-0.038 Sum_probs=114.5
Q ss_pred cccceEEcCC--CCEEEEEecCCeEEEEECCCCCCCccceeeeEEecccCcCCCccceEEEeCC--CCeEEEEEeCcCCC
Q 020019 46 FRECAKWDDS--GRRFIVSFLDGGIGQVAVPDDYPPGTVLEEVTLVKDLELTGNGSLGLVLDHP--RNRLLVVAADVFGN 121 (332)
Q Consensus 46 ~pegia~d~~--g~~~~~~~~~g~I~~vd~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~vd~~--~g~l~v~~~~~~~~ 121 (332)
....+++.++ ++.+++...++.|..++..+++. .. ..... . .......+++.++ ...++++..
T Consensus 57 ~v~~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~----~~-~~~~~--~-~~~~v~~~~~~~~~~~~~l~~~~~----- 123 (379)
T 3jrp_A 57 PVWRVDWAHPKFGTILASCSYDGKVLIWKEENGRW----SQ-IAVHA--V-HSASVNSVQWAPHEYGPLLLVASS----- 123 (379)
T ss_dssp CEEEEEECCGGGCSEEEEEETTSCEEEEEEETTEE----EE-EEEEC--C-CSSCEEEEEECCGGGCSEEEEEET-----
T ss_pred cEEEEEeCCCCCCCEEEEeccCCEEEEEEcCCCce----eE-eeeec--C-CCcceEEEEeCCCCCCCEEEEecC-----
Confidence 4456888876 88888777789998888776541 01 11111 1 1125788999985 334444443
Q ss_pred ccceEEEEECCCCcEEEEEecCCCCCCCCCccceEECC-------------CCcEEEEeCCCCeEEEEcCC-Cc-eEEEe
Q 020019 122 KYSAVAAYDLSTWNRLFLTQLSGPSDGKSCADDVTVDA-------------EGNAYVTDVTGSKIWKVGVK-GE-FLSII 186 (332)
Q Consensus 122 ~~~~l~~~d~~~g~~~~~~~l~~~~~~~~~~ndiavd~-------------dG~lyvtd~~~~~I~~v~~~-g~-~~~~~ 186 (332)
.+.+..||.++++......+.. .......+++.| +++.+++-+..+.|..++.. ++ .....
T Consensus 124 -d~~i~v~d~~~~~~~~~~~~~~---~~~~v~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~ 199 (379)
T 3jrp_A 124 -DGKVSVVEFKENGTTSPIIIDA---HAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLE 199 (379)
T ss_dssp -TSEEEEEECCTTSCCCEEEEEC---CTTCEEEEEECCCC----------CTTCEEEEEETTSCEEEEEEETTTTEEEEE
T ss_pred -CCcEEEEecCCCCceeeEEecC---CCCceEEEEEcCccccccccccCCCCCCEEEEEeCCCeEEEEEecCCCcceeeE
Confidence 4578899998774332223321 124567788888 68888877777877777653 22 11111
Q ss_pred cCCCCCCcccccCccccCeEEEccC---ceEEEEeCCCCeEEEEeCCCCCCccceeEEEEecCCCCCCCCeEEEeCCCeE
Q 020019 187 SSPLFTPKEWYKNLVGLNGIVYHPD---GFLIVIHTFSGNLFKIDIVDGVGEGEEIKLIRVAGGPLSFGDGLELLSPTKL 263 (332)
Q Consensus 187 ~~~~~~~p~~~~~~~~~nGi~~~~d---G~Lyva~~~~~~i~~id~~~~~~~~~~~~~v~~~g~~~~~pdGi~~~~dG~l 263 (332)
. .+. ........++++|+ +.++++-...+.|..+++.++.. .....+............+++.++|++
T Consensus 200 ~--~~~-----~h~~~v~~~~~sp~~~~~~~l~s~~~dg~i~iwd~~~~~~--~~~~~~~~~~~~~~~v~~~~~s~~g~~ 270 (379)
T 3jrp_A 200 S--TLE-----GHSDWVRDVAWSPTVLLRSYLASVSQDRTCIIWTQDNEQG--PWKKTLLKEEKFPDVLWRASWSLSGNV 270 (379)
T ss_dssp E--EEC-----CCSSCEEEEEECCCCSSSEEEEEEETTSCEEEEEESSTTS--CCEEEESSSSCCSSCEEEEEECSSSCC
T ss_pred E--EEe-----cccCcEeEEEECCCCCCCCeEEEEeCCCEEEEEeCCCCCc--cceeeeeccccCCCcEEEEEEcCCCCE
Confidence 0 000 01124578999999 85555556677788888776521 012222111012234567889999886
Q ss_pred EEEe
Q 020019 264 VVAG 267 (332)
Q Consensus 264 ~va~ 267 (332)
+++.
T Consensus 271 l~~~ 274 (379)
T 3jrp_A 271 LALS 274 (379)
T ss_dssp EEEE
T ss_pred EEEe
Confidence 6653
|
| >4a9v_A PHOX; hydrolase, beta-propeller; 1.10A {Pseudomonas fluorescens} PDB: 3zwu_A 4a9x_A* | Back alignment and structure |
|---|
Probab=98.07 E-value=3.3e-05 Score=74.93 Aligned_cols=112 Identities=16% Similarity=0.154 Sum_probs=73.7
Q ss_pred CCccceEECCC-CcEEEEeCC---------------------CCeEEEEcCCCc-----e---EEEe--cCCCCCC----
Q 020019 150 SCADDVTVDAE-GNAYVTDVT---------------------GSKIWKVGVKGE-----F---LSII--SSPLFTP---- 193 (332)
Q Consensus 150 ~~~ndiavd~d-G~lyvtd~~---------------------~~~I~~v~~~g~-----~---~~~~--~~~~~~~---- 193 (332)
.+|-|++++|. |.+|++-+. .|+|+++.+++. . ..++ .++....
T Consensus 384 dRpEdi~v~p~~g~vY~alTnn~~rg~~~~~~~~~Npr~~n~~G~I~r~~e~~~d~~a~~f~W~i~l~~G~p~~~~~~~~ 463 (592)
T 4a9v_A 384 DRPEWIVVSPKDGQVYCTLTNNAKRGEDGQPVGGPNPREKNVYGQILRWRTDRDDHASKTFAWDLFVVAGNPSVHAGTPK 463 (592)
T ss_dssp ECEEEEEECTTTCCEEEEECCBTTTTSTTSCCBTTBCCSSBSSCEEEEEEEGGGCTTCSEEEEEEEEECCCTTTSTTSGG
T ss_pred cCccceeEcCCCCEEEEEEeCCCCCCCcCccccCCCCccCCCCCeEEEEeeCCCCcccceeeEEEEEEccCCcccccccc
Confidence 47899999994 899998542 388999986531 1 1111 1111000
Q ss_pred cc-----cccCccccCeEEEccCceEEE-EeCC-----------CCeEEEEeCCCCCCccceeEEEEecCCCCCCCCeEE
Q 020019 194 KE-----WYKNLVGLNGIVYHPDGFLIV-IHTF-----------SGNLFKIDIVDGVGEGEEIKLIRVAGGPLSFGDGLE 256 (332)
Q Consensus 194 p~-----~~~~~~~~nGi~~~~dG~Lyv-a~~~-----------~~~i~~id~~~~~~~~~~~~~v~~~g~~~~~pdGi~ 256 (332)
.. ....+..||+|+++++|.||+ +|.. ++.+|++++.++ .++.+... .....|.|++
T Consensus 464 ~g~~~~~~~~~fnsPDnL~fd~~G~LWf~TD~~~~~~g~~~~~gnn~v~~~dp~tG-----el~~fl~~-P~~aEpnGia 537 (592)
T 4a9v_A 464 GGSSNITPQNMFNSPDGLGFDKAGRLWILTDGDSSNAGDFAGMGNNQMLCADPATG-----EIRRFMVG-PIGCEVTGIS 537 (592)
T ss_dssp GCCTTCCTTTCCCCEEEEEECTTCCEEEEECCCCCCSGGGTTCCSCEEEEECTTTC-----CEEEEEEC-CTTCEEEEEE
T ss_pred cCccCccccCccCCCCceEECCCCCEEEEeCCCcCccccccccCCceEEEEeCCCC-----eEEEEEeC-CCCccccCCE
Confidence 00 012367899999999999999 6653 458999999877 44444321 1235789999
Q ss_pred EeCCCe-EEEEe
Q 020019 257 LLSPTK-LVVAG 267 (332)
Q Consensus 257 ~~~dG~-l~va~ 267 (332)
+.||++ |||+-
T Consensus 538 fSPD~ktLfV~v 549 (592)
T 4a9v_A 538 FSPDQKTLFVGI 549 (592)
T ss_dssp ECTTSSEEEEEE
T ss_pred ECCCCCEEEEEE
Confidence 999965 78774
|
| >3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.05 E-value=0.005 Score=55.49 Aligned_cols=144 Identities=6% Similarity=0.017 Sum_probs=89.6
Q ss_pred ccceEEEeC--CCCeEEEEEeCcCCCccceEEEEECCCCcEEEEEecCCCCCCCCCccceEECCCCcEEEEeCCCCeEEE
Q 020019 98 GSLGLVLDH--PRNRLLVVAADVFGNKYSAVAAYDLSTWNRLFLTQLSGPSDGKSCADDVTVDAEGNAYVTDVTGSKIWK 175 (332)
Q Consensus 98 ~~~gi~vd~--~~g~l~v~~~~~~~~~~~~l~~~d~~~g~~~~~~~l~~~~~~~~~~ndiavd~dG~lyvtd~~~~~I~~ 175 (332)
....+.+++ + +.++++... .+.+..||.++++........ .....+.+++.|+|.++++-+..+.|..
T Consensus 127 ~v~~~~~~~~~~-~~~l~s~s~-----dg~i~~wd~~~~~~~~~~~~~----~~~~i~~~~~~pdg~~lasg~~dg~i~i 196 (343)
T 3lrv_A 127 EIIYMYGHNEVN-TEYFIWADN-----RGTIGFQSYEDDSQYIVHSAK----SDVEYSSGVLHKDSLLLALYSPDGILDV 196 (343)
T ss_dssp CEEEEECCC----CCEEEEEET-----TCCEEEEESSSSCEEEEECCC----SSCCCCEEEECTTSCEEEEECTTSCEEE
T ss_pred CEEEEEcCCCCC-CCEEEEEeC-----CCcEEEEECCCCcEEEEEecC----CCCceEEEEECCCCCEEEEEcCCCEEEE
Confidence 467899988 7 665554432 356889999988875433221 1234788999999998888788888888
Q ss_pred EcCC-CceE-EEecCCCCCCcccccCccccCeEEEccCc-eEEEEeCCCCeEEEEeCCCCCCccceeEEEEe-cCCCCCC
Q 020019 176 VGVK-GEFL-SIISSPLFTPKEWYKNLVGLNGIVYHPDG-FLIVIHTFSGNLFKIDIVDGVGEGEEIKLIRV-AGGPLSF 251 (332)
Q Consensus 176 v~~~-g~~~-~~~~~~~~~~p~~~~~~~~~nGi~~~~dG-~Lyva~~~~~~i~~id~~~~~~~~~~~~~v~~-~g~~~~~ 251 (332)
+|.. ++.. ..+... .....+.|+|+|+| .|..+. . +.|..+|+.+++. +..+.. .......
T Consensus 197 wd~~~~~~~~~~~~~~---------h~~~v~~l~fs~~g~~l~s~~-~-~~v~iwd~~~~~~----~~~~~~~~~~~~~~ 261 (343)
T 3lrv_A 197 YNLSSPDQASSRFPVD---------EEAKIKEVKFADNGYWMVVEC-D-QTVVCFDLRKDVG----TLAYPTYTIPEFKT 261 (343)
T ss_dssp EESSCTTSCCEECCCC---------TTSCEEEEEECTTSSEEEEEE-S-SBEEEEETTSSTT----CBSSCCCBC-----
T ss_pred EECCCCCCCccEEecc---------CCCCEEEEEEeCCCCEEEEEe-C-CeEEEEEcCCCCc----ceeecccccccccc
Confidence 8875 3322 112110 12346799999999 666655 3 3888899886531 111111 0000110
Q ss_pred -CCeEEEeCCCeEEEE
Q 020019 252 -GDGLELLSPTKLVVA 266 (332)
Q Consensus 252 -pdGi~~~~dG~l~va 266 (332)
...++++++|+++++
T Consensus 262 ~~~~~~~~~~g~~l~~ 277 (343)
T 3lrv_A 262 GTVTYDIDDSGKNMIA 277 (343)
T ss_dssp CCEEEEECTTSSEEEE
T ss_pred cceEEEECCCCCEEEE
Confidence 035999999998887
|
| >1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1 | Back alignment and structure |
|---|
Probab=98.05 E-value=0.0062 Score=60.97 Aligned_cols=204 Identities=13% Similarity=0.125 Sum_probs=107.0
Q ss_pred ceEEEeCCCCeEEEEEeCcC-----------C--CccceEEEEECCCCcEEEEEecCCCCC-CCCCccceE-EC--CCC-
Q 020019 100 LGLVLDHPRNRLLVVAADVF-----------G--NKYSAVAAYDLSTWNRLFLTQLSGPSD-GKSCADDVT-VD--AEG- 161 (332)
Q Consensus 100 ~gi~vd~~~g~l~v~~~~~~-----------~--~~~~~l~~~d~~~g~~~~~~~l~~~~~-~~~~~ndia-vd--~dG- 161 (332)
..+++|++.+.+|+...+.. . .-.+.|+.+|.++|+..+.++...... ....+...+ ++ .+|
T Consensus 246 ~~~~~d~~~~~vy~~~~~~~~w~~~~~~~~~gd~~~~~sv~AlD~~TG~~~W~~~~~~~d~wd~~~~~~p~l~~~~~dG~ 325 (677)
T 1kb0_A 246 DSMTFDAELNTMYVGTGNGSPWSHKVRSPKGGDNLYLASIVALDPDTGKYKWHYQETPGDNWDYTSTQPMILADIKIAGK 325 (677)
T ss_dssp SCEEEETTTTEEEEECCCEESSCHHHHSTTCCCCTTTTEEEEECTTTCCEEEEEESSTTCCSCCCCCSCCEEEEEEETTE
T ss_pred cceeEcCCCCEEEEECCCCccccCCCCCccCCCCeeeEEEEEEECCCCCEEEEEecCCCcccccccCCCcEEEecccCCc
Confidence 36889998789998864310 0 001359999999999998887632100 001111222 22 145
Q ss_pred --cEEEEeCCCCeEEEEcCC-CceEEEecCCCCC---------Ccc-------------cccCc---cccCeEEEccCc-
Q 020019 162 --NAYVTDVTGSKIWKVGVK-GEFLSIISSPLFT---------PKE-------------WYKNL---VGLNGIVYHPDG- 212 (332)
Q Consensus 162 --~lyvtd~~~~~I~~v~~~-g~~~~~~~~~~~~---------~p~-------------~~~~~---~~~nGi~~~~dG- 212 (332)
.+++.-...|.|+.+|.. |+.+.......-. .|. ..+.. ..-.+++++|++
T Consensus 326 ~~~~l~~~~~~G~l~~lD~~tG~~l~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~P~~~G~~~w~~~a~dp~~~ 405 (677)
T 1kb0_A 326 PRKVILHAPKNGFFFVLDRTNGKFISAKNFVPVNWASGYDKHGKPIGIAAARDGSKPQDAVPGPYGAHNWHPMSFNPQTG 405 (677)
T ss_dssp EEEEEEECCTTSEEEEEETTTCCEEEEEESSCCSSEEEECTTSCEEECGGGGCTTSCEECSSCTTCSSCSSCCEEETTTT
T ss_pred EeeEEEEECCCCEEEEEECCCCCEeccccccccCcccccCCCCceeeccccCcCCCccEECcCcccccCCCCceEcCCCC
Confidence 455555567888888865 6654222100000 000 00011 112478999987
Q ss_pred eEEEEeCC------------------------------------------CCeEEEEeCCCCCCccceeEEEEecCCCCC
Q 020019 213 FLIVIHTF------------------------------------------SGNLFKIDIVDGVGEGEEIKLIRVAGGPLS 250 (332)
Q Consensus 213 ~Lyva~~~------------------------------------------~~~i~~id~~~~~~~~~~~~~v~~~g~~~~ 250 (332)
.+|+.... .+.|..+|+.+++ .+-.+... . .
T Consensus 406 ~~yv~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~g~~~~~~~~~~~~~g~l~A~D~~tG~----~~W~~~~~-~--~ 478 (677)
T 1kb0_A 406 LVYLPAQNVPVNLMDDKKWEFNQAGPGKPQSGTGWNTAKFFNAEPPKSKPFGRLLAWDPVAQK----AAWSVEHV-S--P 478 (677)
T ss_dssp EEEEEEEECCCEEEECTTCCTTCCCTTSTTGGGTCCCCEEECSSCCCSCCEEEEEEEETTTTE----EEEEEEES-S--S
T ss_pred EEEEeChhcceeeecccccccccccccccccccccccccccccccCCCCCccEEEEEeCCCCc----EEeecCCC-C--C
Confidence 88886421 1678899998872 33333332 1 1
Q ss_pred CCCeEEEeCCCeEEEEeCC-ceEEEEcCCCceEEEEEeeecCCCcccceEEEE-ECCeEEEEEecC
Q 020019 251 FGDGLELLSPTKLVVAGNP-SARLVESSDGWETAAVVAKFSGPVHRLATAATV-KDGRVYLNHMLG 314 (332)
Q Consensus 251 ~pdGi~~~~dG~l~va~~~-~~~~v~~~dg~~~~~~~~~~~~~~~~~pt~va~-~~g~lyv~~~~g 314 (332)
.-.|.....++.+|++... ..+.+...+| +++..+..+....-+-+++ .+|+.||....|
T Consensus 479 ~~~g~~~~~g~~v~~g~~dg~l~a~D~~tG----~~lw~~~~~~~~~~~p~~y~~~G~~~v~~~~G 540 (677)
T 1kb0_A 479 WNGGTLTTAGNVVFQGTADGRLVAYHAATG----EKLWEAPTGTGVVAAPSTYMVDGRQYVSVAVG 540 (677)
T ss_dssp CCCCEEEETTTEEEEECTTSEEEEEETTTC----CEEEEEECSSCCCSCCEEEEETTEEEEEEEEC
T ss_pred CcCcceEeCCCEEEEECCCCcEEEEECCCC----ceeeeeeCCCCcccCCEEEEeCCEEEEEEecc
Confidence 2234444456778887543 3344556677 3333333222112223455 788899854433
|
| >1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP: b.70.1.1 PDB: 1h4i_A* 1h4j_A* 2d0v_A* 1lrw_A* | Back alignment and structure |
|---|
Probab=98.03 E-value=0.0051 Score=60.68 Aligned_cols=203 Identities=11% Similarity=0.009 Sum_probs=108.6
Q ss_pred eEEEeCCCCeEEEEEeCcCC---------C-ccceEEEEECCCCcEEEEEecCCCCC-CCCCccc-eEEC---CCC---c
Q 020019 101 GLVLDHPRNRLLVVAADVFG---------N-KYSAVAAYDLSTWNRLFLTQLSGPSD-GKSCADD-VTVD---AEG---N 162 (332)
Q Consensus 101 gi~vd~~~g~l~v~~~~~~~---------~-~~~~l~~~d~~~g~~~~~~~l~~~~~-~~~~~nd-iavd---~dG---~ 162 (332)
.+++|+++|.+|+...+... + -...|+.+|+++|+..+.++...... ....++. +.+| .+| .
T Consensus 245 ~~a~d~~~g~vy~g~g~~~p~~~~~r~gd~~y~~sv~Ald~~TG~~~W~~q~~~~d~wd~d~~~~p~l~d~~~~~G~~~~ 324 (599)
T 1w6s_A 245 WYAYDPGTNLIYFGTGNPAPWNETMRPGDNKWTMTIFGRDADTGEAKFGYQKTPHDEWDYAGVNVMMLSEQKDKDGKARK 324 (599)
T ss_dssp CCEEETTTTEEEEECCCCSCSCGGGSCSCCTTSSEEEEEETTTCCEEEEEESSTTCSSCCCCCCCCEEEEEECTTSCEEE
T ss_pred ceeEeCCCCEEEEeCCCCccccCcccCCCccccceEEEEeCCCCceeeEeecCCCccccccCCCccEEEeccccCCcEEE
Confidence 47888888999998653100 0 02469999999999998887632100 0011111 3333 456 4
Q ss_pred EEEEeCCCCeEEEEcCC-CceEEEecCCC-----------CCCccc---------------cc---CccccCeEEEccCc
Q 020019 163 AYVTDVTGSKIWKVGVK-GEFLSIISSPL-----------FTPKEW---------------YK---NLVGLNGIVYHPDG 212 (332)
Q Consensus 163 lyvtd~~~~~I~~v~~~-g~~~~~~~~~~-----------~~~p~~---------------~~---~~~~~nGi~~~~dG 212 (332)
+++.-..+|.+|.+|.. |+.+.-..... -..|.. .| +...-.+++++|+.
T Consensus 325 ~v~~~~~~G~l~~lD~~tG~~lw~~~~~~~~~~~~~~~~~~g~p~~~~~~~~~~~~~~~~~~P~~~Gg~~w~~~a~dp~~ 404 (599)
T 1w6s_A 325 LLTHPDRNGIVYTLDRTDGALVSANKLDDTVNVFKSVDLKTGQPVRDPEYGTRMDHLAKDICPSAMGYHNQGHDSYDPKR 404 (599)
T ss_dssp EEEEECTTSEEEEEETTTCCEEEEEESSTTCCSEEEECTTTCCEEECGGGCCCTTCCEEEESSCTTCSSCSCBCEEETTT
T ss_pred EEEEECCCcEEEEEECCCCCEeecccccCCcccccccccCCCceeeccccCCCCCCCccEeccCcccccCCCCccCCCCC
Confidence 56655667888888864 66442211000 000000 00 11223678899886
Q ss_pred -eEEEEeC--------------------------------------CCCeEEEEeCCCCCCccceeEEEEecCCCCCCCC
Q 020019 213 -FLIVIHT--------------------------------------FSGNLFKIDIVDGVGEGEEIKLIRVAGGPLSFGD 253 (332)
Q Consensus 213 -~Lyva~~--------------------------------------~~~~i~~id~~~~~~~~~~~~~v~~~g~~~~~pd 253 (332)
.+|+... ..+.|+.+|+.+++ .+=..+.. .+.-.
T Consensus 405 ~~~yv~~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~~p~~~~~~~~~~G~l~A~D~~tG~----~~W~~~~~---~~~~~ 477 (599)
T 1w6s_A 405 ELFFMGINHICMDWEPFMLPYKAGQFFVGATLNMYPGPKGDRQNYEGLGQIKAYNAITGD----YKWEKMER---FAVWG 477 (599)
T ss_dssp TEEEEEEECEEEEEEECCCCCCTTSCCCCEEEEEEECTTSBTTTTBCCEEEEEECTTTCC----EEEEEEES---SCCCS
T ss_pred CEEEEeccccceeeecccccccCCcceecccceeccCCcCCcccCCCcCeEEEEECCCCC----EEeEecCC---CCccC
Confidence 7776421 23578888888772 22223222 12223
Q ss_pred eEEEeCCCeEEEEeCC-ceEEEEcCCCceEEEEEeeecCCCcccceEEEE-ECCeEEEEEecC
Q 020019 254 GLELLSPTKLVVAGNP-SARLVESSDGWETAAVVAKFSGPVHRLATAATV-KDGRVYLNHMLG 314 (332)
Q Consensus 254 Gi~~~~dG~l~va~~~-~~~~v~~~dg~~~~~~~~~~~~~~~~~pt~va~-~~g~lyv~~~~g 314 (332)
|.....+|.+|++... ..+.+...+|...-+ ..+.......| +++ .+|++||....|
T Consensus 478 g~~~tagg~vf~gt~dg~l~A~D~~tG~~lW~--~~l~~g~~~~P--~~y~~~G~qyv~~~~G 536 (599)
T 1w6s_A 478 GTMATAGDLVFYGTLDGYLKARDSDTGDLLWK--FKIPSGAIGYP--MTYTHKGTQYVAIYYG 536 (599)
T ss_dssp BCEEETTTEEEEECTTSEEEEEETTTCCEEEE--EECSSCCCSCC--EEEEETTEEEEEEEEC
T ss_pred cceEecCCEEEEECCCCeEEEEECCCCCEEEE--eeCCCCcEecc--EEEEeCCEEEEEEEcc
Confidence 5344567889987644 345456677722211 12222223334 444 799999965555
|
| >4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a | Back alignment and structure |
|---|
Probab=98.03 E-value=0.0064 Score=53.89 Aligned_cols=196 Identities=12% Similarity=0.067 Sum_probs=116.8
Q ss_pred cccceEEcCCCCEEEEEecCCeEEEEECCCCCCCccceeeeEEecccCcCCCccceEEEeCCCCeEEEEEeCcCCCccce
Q 020019 46 FRECAKWDDSGRRFIVSFLDGGIGQVAVPDDYPPGTVLEEVTLVKDLELTGNGSLGLVLDHPRNRLLVVAADVFGNKYSA 125 (332)
Q Consensus 46 ~pegia~d~~g~~~~~~~~~g~I~~vd~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~vd~~~g~l~v~~~~~~~~~~~~ 125 (332)
....++++++|+.+++...++.|..++...... . ...... ......+...++ +..+++... .+.
T Consensus 88 ~V~~~~~s~dg~~l~s~~~d~~i~~~~~~~~~~-----~--~~~~~~---~~~~~~~~~~~~-~~~l~s~s~-----d~~ 151 (340)
T 4aow_A 88 FVSDVVISSDGQFALSGSWDGTLRLWDLTTGTT-----T--RRFVGH---TKDVLSVAFSSD-NRQIVSGSR-----DKT 151 (340)
T ss_dssp CEEEEEECTTSSEEEEEETTSEEEEEETTTTEE-----E--EEEECC---SSCEEEEEECTT-SSCEEEEET-----TSC
T ss_pred CEEEEEECCCCCEEEEEcccccceEEeecccce-----e--eeecCC---CCceeEEEEeec-CccceeecC-----CCe
Confidence 456789999999888877789999998765431 1 111111 123456667775 444443321 346
Q ss_pred EEEEECCCCcEEEEEecCCCCCCCCCccceEECCCC--cEEEEeCCCCeEEEEcCC-CceEEEecCCCCCCcccccCccc
Q 020019 126 VAAYDLSTWNRLFLTQLSGPSDGKSCADDVTVDAEG--NAYVTDVTGSKIWKVGVK-GEFLSIISSPLFTPKEWYKNLVG 202 (332)
Q Consensus 126 l~~~d~~~g~~~~~~~l~~~~~~~~~~ndiavd~dG--~lyvtd~~~~~I~~v~~~-g~~~~~~~~~~~~~p~~~~~~~~ 202 (332)
+..||....... .....+ .......+++.+++ .++++....+.|..++.. ++....+... ...
T Consensus 152 ~~~~d~~~~~~~-~~~~~~---~~~~v~~~~~~~~~~~~~~~s~~~d~~i~i~d~~~~~~~~~~~~h----------~~~ 217 (340)
T 4aow_A 152 IKLWNTLGVCKY-TVQDES---HSEWVSCVRFSPNSSNPIIVSCGWDKLVKVWNLANCKLKTNHIGH----------TGY 217 (340)
T ss_dssp EEEECTTSCEEE-EECSSS---CSSCEEEEEECSCSSSCEEEEEETTSCEEEEETTTTEEEEEECCC----------SSC
T ss_pred EEEEEeCCCceE-EEEecc---ccCcccceEEccCCCCcEEEEEcCCCEEEEEECCCCceeeEecCC----------CCc
Confidence 788998754432 223321 12445667777664 467777777888888876 3433322111 123
Q ss_pred cCeEEEccCceEEEEeCCCCeEEEEeCCCCCCccceeEEEEecCCCCCCCCeEEEeCCCeEEEEeCC-ceEEEEcCCC
Q 020019 203 LNGIVYHPDGFLIVIHTFSGNLFKIDIVDGVGEGEEIKLIRVAGGPLSFGDGLELLSPTKLVVAGNP-SARLVESSDG 279 (332)
Q Consensus 203 ~nGi~~~~dG~Lyva~~~~~~i~~id~~~~~~~~~~~~~v~~~g~~~~~pdGi~~~~dG~l~va~~~-~~~~v~~~dg 279 (332)
.+.|+++|+|.++++-...+.|..+|+.+. ..+..+... .....+++.+++.++++... ..++.....+
T Consensus 218 v~~~~~s~~~~~l~s~s~Dg~i~iwd~~~~----~~~~~~~~~----~~v~~~~~~~~~~~~~~~~d~~i~iwd~~~~ 287 (340)
T 4aow_A 218 LNTVTVSPDGSLCASGGKDGQAMLWDLNEG----KHLYTLDGG----DIINALCFSPNRYWLCAATGPSIKIWDLEGK 287 (340)
T ss_dssp EEEEEECTTSSEEEEEETTCEEEEEETTTT----EEEEEEECS----SCEEEEEECSSSSEEEEEETTEEEEEETTTT
T ss_pred EEEEEECCCCCEEEEEeCCCeEEEEEeccC----ceeeeecCC----ceEEeeecCCCCceeeccCCCEEEEEECCCC
Confidence 578999999966666667788988998866 234434322 23456778888877776543 3333333433
|
| >1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A* | Back alignment and structure |
|---|
Probab=98.02 E-value=0.00056 Score=71.82 Aligned_cols=207 Identities=14% Similarity=0.057 Sum_probs=114.5
Q ss_pred ccccceEEcCCCCEEEEEecCCeEEEEECCCCCCCccceeeeEEecccCcCCCccceEEEeCCCCe-EEEEEeCc--C--
Q 020019 45 FFRECAKWDDSGRRFIVSFLDGGIGQVAVPDDYPPGTVLEEVTLVKDLELTGNGSLGLVLDHPRNR-LLVVAADV--F-- 119 (332)
Q Consensus 45 ~~pegia~d~~g~~~~~~~~~g~I~~vd~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~vd~~~g~-l~v~~~~~--~-- 119 (332)
..+..++++|+|+.++.....+.|+.++..+++. . .+..... .....++++|+ |+ |.++..+. .
T Consensus 379 ~~~~~~~~SpDG~~la~~~~~~~v~~~d~~tg~~-----~--~~~~~~~---~~v~~~~~SpD-G~~la~~~~~~~~~~~ 447 (1045)
T 1k32_A 379 GNVFAMGVDRNGKFAVVANDRFEIMTVDLETGKP-----T--VIERSRE---AMITDFTISDN-SRFIAYGFPLKHGETD 447 (1045)
T ss_dssp CSEEEEEECTTSSEEEEEETTSEEEEEETTTCCE-----E--EEEECSS---SCCCCEEECTT-SCEEEEEEEECSSTTC
T ss_pred cceeeeEECCCCCEEEEECCCCeEEEEECCCCce-----E--EeccCCC---CCccceEECCC-CCeEEEEecCcccccc
Confidence 3567899999999887666678999999987762 1 2321111 13478999997 66 43333221 0
Q ss_pred CCccceEEEEECCCCcEEEEEecCCCCCCCCCccceEECCCCc-EEEEeCCCC-eEEE-------EcCCCceEEE-ecCC
Q 020019 120 GNKYSAVAAYDLSTWNRLFLTQLSGPSDGKSCADDVTVDAEGN-AYVTDVTGS-KIWK-------VGVKGEFLSI-ISSP 189 (332)
Q Consensus 120 ~~~~~~l~~~d~~~g~~~~~~~l~~~~~~~~~~ndiavd~dG~-lyvtd~~~~-~I~~-------v~~~g~~~~~-~~~~ 189 (332)
......|++||.++++. ..+.. .......+++.|||+ ||+...... .++. +..+.+...+ +...
T Consensus 448 ~~~~~~i~l~d~~~g~~---~~l~~---~~~~~~~~~~spdG~~l~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 521 (1045)
T 1k32_A 448 GYVMQAIHVYDMEGRKI---FAATT---ENSHDYAPAFDADSKNLYYLSYRSLDPSPDRVVLNFSFEVVSKPFVIPLIPG 521 (1045)
T ss_dssp SCCEEEEEEEETTTTEE---EECSC---SSSBEEEEEECTTSCEEEEEESCCCCCEECSSSSCEECCSCBEEEEEESSTT
T ss_pred CCCCCeEEEEECCCCcE---EEeeC---CCcccCCceEcCCCCEEEEEecccCCcCcchhccccccccCceeEEEEeCCC
Confidence 01235799999988763 23321 123456689999996 666544221 1111 0111111100 0000
Q ss_pred ---C----------------CCC--cc--ccc-CccccCeEEEccCceEEEE-------------eCCCCeEEEEeCCCC
Q 020019 190 ---L----------------FTP--KE--WYK-NLVGLNGIVYHPDGFLIVI-------------HTFSGNLFKIDIVDG 232 (332)
Q Consensus 190 ---~----------------~~~--p~--~~~-~~~~~nGi~~~~dG~Lyva-------------~~~~~~i~~id~~~~ 232 (332)
. +.. .. ..+ ......++++++||.+|+. .....+|+++|+.++
T Consensus 522 ~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~l~~~~~~~~~~~~s~dg~~~~~~~~~g~~~~~~~~~~~~~~l~~~d~~~~ 601 (1045)
T 1k32_A 522 SPNPTKLVPRSMTSEAGEYDLNDMYKRSSPINVDPGDYRMIIPLESSILIYSVPVHGEFAAYYQGAPEKGVLLKYDVKTR 601 (1045)
T ss_dssp CCCGGGCCCGGGSCCCCCCCCTTGGGGCEECSCCCBCEEEEEECSSEEEEEECCCCCSHHHHHHCCCCCEEEEEEETTTC
T ss_pred CCCccccCcCccccccccccccCHhHceEEcCCCCCChhheEEcCCCeEEEEecccCcccccccccCCCceEEEEECCCC
Confidence 0 000 00 000 1123568999999965553 223558999999877
Q ss_pred CCccceeEEEEecCCCCCCCCeEEEeCCCe-EEEEeCCceEEEEcCCC
Q 020019 233 VGEGEEIKLIRVAGGPLSFGDGLELLSPTK-LVVAGNPSARLVESSDG 279 (332)
Q Consensus 233 ~~~~~~~~~v~~~g~~~~~pdGi~~~~dG~-l~va~~~~~~~v~~~dg 279 (332)
+ .+.+. ..+..+++++||+ |+++.....+++....+
T Consensus 602 ~-----~~~l~------~~v~~~~~S~DG~~l~~~~~~~i~~~d~~~~ 638 (1045)
T 1k32_A 602 K-----VTEVK------NNLTDLRLSADRKTVMVRKDDGKIYTFPLEK 638 (1045)
T ss_dssp C-----EEEEE------EEEEEEEECTTSCEEEEEETTSCEEEEESSC
T ss_pred c-----EEEee------cCcceEEECCCCCEEEEEcCCcEEEEeCccC
Confidence 2 33232 1245789999987 45555455555555555
|
| >3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.02 E-value=0.0021 Score=59.65 Aligned_cols=211 Identities=9% Similarity=0.100 Sum_probs=120.4
Q ss_pred cccceEEcCCCCEEEEEecCCeEEEEECCCCCCCc----ccee-eeEEeccc-Cc---C----CCccceEEEeCCC--Ce
Q 020019 46 FRECAKWDDSGRRFIVSFLDGGIGQVAVPDDYPPG----TVLE-EVTLVKDL-EL---T----GNGSLGLVLDHPR--NR 110 (332)
Q Consensus 46 ~pegia~d~~g~~~~~~~~~g~I~~vd~~~~~~~~----~~~~-~~~~~~~~-~~---~----~~~~~gi~vd~~~--g~ 110 (332)
....++++++|+++++...+|.|..++..+++... ...+ ...+.... ++ . ......+++.++. ..
T Consensus 30 ~V~~v~~s~~g~~la~g~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~V~~l~~~~~~~~~~ 109 (447)
T 3dw8_B 30 IISTVEFNHSGELLATGDKGGRVVIFQQEQENKIQSHSRGEYNVYSTFQSHEPEFDYLKSLEIEEKINKIRWLPQKNAAQ 109 (447)
T ss_dssp SEEEEEECSSSSEEEEEETTSEEEEEEECC-----CCCCCCEEEEEEEECCCCEEEGGGTEEECCCCCEEEECCCCSSSE
T ss_pred cEEEEEECCCCCEEEEEcCCCeEEEEEecCCCCCCcccccceeEecccccccccccccccccccCceEEEEEcCCCCcce
Confidence 44578999999988887778999888876543100 0000 00121111 00 0 0246789999973 24
Q ss_pred EEEEEeCcCCCccceEEEEECCCCcEEEE-------------------------------------EecCCCCCCCCCcc
Q 020019 111 LLVVAADVFGNKYSAVAAYDLSTWNRLFL-------------------------------------TQLSGPSDGKSCAD 153 (332)
Q Consensus 111 l~v~~~~~~~~~~~~l~~~d~~~g~~~~~-------------------------------------~~l~~~~~~~~~~n 153 (332)
+..+.. .+.|..||.++++.... ..+. ........
T Consensus 110 l~s~s~------d~~i~iw~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~h~~~v~ 181 (447)
T 3dw8_B 110 FLLSTN------DKTIKLWKISERDKRPEGYNLKEEDGRYRDPTTVTTLRVPVFRPMDLMVEASPRRIFA--NAHTYHIN 181 (447)
T ss_dssp EEEEEC------SSCEEEEEEEEEEEEEECCSCC--------CCCCCSCCCCEEEEEEEEEEEEEEEEEC--SCCSSCCC
T ss_pred EEEeCC------CCeEEEEecccccCCcceecccCccccccCcccccceEeccccchheeeeccceEEec--cCCCcceE
Confidence 444443 34677888765433110 0110 11134577
Q ss_pred ceEECCCCcEEEEeCCCCeEEEEcCC--CceEEEecCCCCCCcccccCccccCeEEEccCc-eEEEEeCCCCeEEEEeCC
Q 020019 154 DVTVDAEGNAYVTDVTGSKIWKVGVK--GEFLSIISSPLFTPKEWYKNLVGLNGIVYHPDG-FLIVIHTFSGNLFKIDIV 230 (332)
Q Consensus 154 diavd~dG~lyvtd~~~~~I~~v~~~--g~~~~~~~~~~~~~p~~~~~~~~~nGi~~~~dG-~Lyva~~~~~~i~~id~~ 230 (332)
.+++.++|+++++- ..+.|..++.. ++....+...... ........+.++|+|+| .++++-...+.|..+|+.
T Consensus 182 ~~~~~~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~---~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~ 257 (447)
T 3dw8_B 182 SISINSDYETYLSA-DDLRINLWHLEITDRSFNIVDIKPAN---MEELTEVITAAEFHPNSCNTFVYSSSKGTIRLCDMR 257 (447)
T ss_dssp EEEECTTSSEEEEE-CSSEEEEEETTEEEEEEEEEECCCSS---GGGCCCCEEEEEECSSCTTEEEEEETTSCEEEEETT
T ss_pred EEEEcCCCCEEEEe-CCCeEEEEECCCCCceeeeeeccccc---ccccCcceEEEEECCCCCcEEEEEeCCCeEEEEECc
Confidence 89999999988776 68889888877 2333222111000 00122346899999998 777777788899999988
Q ss_pred CCCCccceeEEEEecCCC---------CCCCCeEEEeCCCeEEEEeC
Q 020019 231 DGVGEGEEIKLIRVAGGP---------LSFGDGLELLSPTKLVVAGN 268 (332)
Q Consensus 231 ~~~~~~~~~~~v~~~g~~---------~~~pdGi~~~~dG~l~va~~ 268 (332)
+++........+...... ......+++.++|+++++..
T Consensus 258 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~ 304 (447)
T 3dw8_B 258 ASALCDRHSKLFEEPEDPSNRSFFSEIISSISDVKFSHSGRYMMTRD 304 (447)
T ss_dssp TCSSSCTTCEEECCC-----CCHHHHHTTCEEEEEECTTSSEEEEEE
T ss_pred CCccccceeeEeccCCCccccccccccCceEEEEEECCCCCEEEEee
Confidence 763211113434322000 01456899999998877753
|
| >3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=97.98 E-value=0.0054 Score=53.62 Aligned_cols=199 Identities=9% Similarity=0.001 Sum_probs=115.5
Q ss_pred EecCCccccceEEcCCCCEEEEEecCCeEEEEECCCCCCCccceeeeEEecccCcCCCccceEEEeCCCCeEEEEEeCcC
Q 020019 40 YHSSSFFRECAKWDDSGRRFIVSFLDGGIGQVAVPDDYPPGTVLEEVTLVKDLELTGNGSLGLVLDHPRNRLLVVAADVF 119 (332)
Q Consensus 40 ~~~~~~~pegia~d~~g~~~~~~~~~g~I~~vd~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~vd~~~g~l~v~~~~~~ 119 (332)
+.+.......+++ ++++.+++...+|.|..++..+++. .. .+... ......++++++ ++++++...
T Consensus 14 l~~h~~~v~~~~~-~~~~~l~s~~~dg~v~vw~~~~~~~----~~--~~~~~----~~~v~~~~~~~~-~~~l~~~~~-- 79 (313)
T 3odt_A 14 LKGHDQDVRDVVA-VDDSKVASVSRDGTVRLWSKDDQWL----GT--VVYTG----QGFLNSVCYDSE-KELLLFGGK-- 79 (313)
T ss_dssp ECCCSSCEEEEEE-EETTEEEEEETTSEEEEEEESSSEE----EE--EEEEC----SSCEEEEEEETT-TTEEEEEET--
T ss_pred hhCCCCCcEEEEe-cCCCEEEEEEcCCcEEEEECCCCEE----EE--EeecC----CccEEEEEECCC-CCEEEEecC--
Confidence 4444445677888 8888888777789999999865541 11 22211 125788999997 554444332
Q ss_pred CCccceEEEEECCCCcE-EEEEecCCCCCCCCCccceEECCCCcEEEEeCCCCeEEEEcCCCceEEEecCCCCCCccccc
Q 020019 120 GNKYSAVAAYDLSTWNR-LFLTQLSGPSDGKSCADDVTVDAEGNAYVTDVTGSKIWKVGVKGEFLSIISSPLFTPKEWYK 198 (332)
Q Consensus 120 ~~~~~~l~~~d~~~g~~-~~~~~l~~~~~~~~~~ndiavd~dG~lyvtd~~~~~I~~v~~~g~~~~~~~~~~~~~p~~~~ 198 (332)
.+.+..|+...... .....+.. .......+.+ +++.+++-...+.|..++ .++....+...
T Consensus 80 ---dg~i~~~~~~~~~~~~~~~~~~~---~~~~i~~~~~--~~~~l~~~~~d~~i~~~d-~~~~~~~~~~~--------- 141 (313)
T 3odt_A 80 ---DTMINGVPLFATSGEDPLYTLIG---HQGNVCSLSF--QDGVVISGSWDKTAKVWK-EGSLVYNLQAH--------- 141 (313)
T ss_dssp ---TSCEEEEETTCCTTSCC-CEECC---CSSCEEEEEE--ETTEEEEEETTSEEEEEE-TTEEEEEEECC---------
T ss_pred ---CCeEEEEEeeecCCCCcccchhh---cccCEEEEEe--cCCEEEEEeCCCCEEEEc-CCcEEEecccC---------
Confidence 35677888765321 11112211 1234566777 456777777788888888 43433322211
Q ss_pred CccccCeEEEcc-CceEEEEeCCCCeEEEEeCCCCCCccceeEEEEecCCCCCCCCeEEEeCCCeEEEEeCCc-eEEEEc
Q 020019 199 NLVGLNGIVYHP-DGFLIVIHTFSGNLFKIDIVDGVGEGEEIKLIRVAGGPLSFGDGLELLSPTKLVVAGNPS-ARLVES 276 (332)
Q Consensus 199 ~~~~~nGi~~~~-dG~Lyva~~~~~~i~~id~~~~~~~~~~~~~v~~~g~~~~~pdGi~~~~dG~l~va~~~~-~~~v~~ 276 (332)
......+++.+ ++.++++-...+.|..++... ....+... .......+++.+++.++++.... .++...
T Consensus 142 -~~~v~~~~~~~~~~~~l~~~~~d~~i~i~d~~~------~~~~~~~~--~~~~i~~~~~~~~~~~~~~~~dg~i~i~d~ 212 (313)
T 3odt_A 142 -NASVWDAKVVSFSENKFLTASADKTIKLWQNDK------VIKTFSGI--HNDVVRHLAVVDDGHFISCSNDGLIKLVDM 212 (313)
T ss_dssp -SSCEEEEEEEETTTTEEEEEETTSCEEEEETTE------EEEEECSS--CSSCEEEEEEEETTEEEEEETTSEEEEEET
T ss_pred -CCceeEEEEccCCCCEEEEEECCCCEEEEecCc------eEEEEecc--CcccEEEEEEcCCCeEEEccCCCeEEEEEC
Confidence 12345778877 774444555677888887331 33333321 22456788899999866665443 344455
Q ss_pred CCC
Q 020019 277 SDG 279 (332)
Q Consensus 277 ~dg 279 (332)
..+
T Consensus 213 ~~~ 215 (313)
T 3odt_A 213 HTG 215 (313)
T ss_dssp TTC
T ss_pred Cch
Confidence 555
|
| >3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A | Back alignment and structure |
|---|
Probab=97.96 E-value=0.008 Score=52.88 Aligned_cols=199 Identities=13% Similarity=0.071 Sum_probs=114.0
Q ss_pred cccceEEcCCCCEEEEEecCCeEEEEECCCCCCCccceee-eEEecccCcCCCccceEEEeCC-CCeEEEEEeCcCCCcc
Q 020019 46 FRECAKWDDSGRRFIVSFLDGGIGQVAVPDDYPPGTVLEE-VTLVKDLELTGNGSLGLVLDHP-RNRLLVVAADVFGNKY 123 (332)
Q Consensus 46 ~pegia~d~~g~~~~~~~~~g~I~~vd~~~~~~~~~~~~~-~~~~~~~~~~~~~~~gi~vd~~-~g~l~v~~~~~~~~~~ 123 (332)
....++++++++.+++...+|.|..++..++... .+. ..+... ......+++.+. ++.++++... .
T Consensus 13 ~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~---~~~~~~~~~~----~~~v~~~~~~~~~d~~~l~s~~~-----d 80 (351)
T 3f3f_A 13 LVHDVVYDFYGRHVATCSSDQHIKVFKLDKDTSN---WELSDSWRAH----DSSIVAIDWASPEYGRIIASASY-----D 80 (351)
T ss_dssp CEEEEEECSSSSEEEEEETTSEEEEEEECSSSCC---EEEEEEEECC----SSCEEEEEECCGGGCSEEEEEET-----T
T ss_pred ceeEEEEcCCCCEEEEeeCCCeEEEEECCCCCCc---ceecceeccC----CCcEEEEEEcCCCCCCEEEEEcC-----C
Confidence 4567999999998887777899988887754321 010 011111 125688999873 1554444332 3
Q ss_pred ceEEEEECCCCcE-------EEEEecCCCCCCCCCccceEECCC--CcEEEEeCCCCeEEEEcCC-CceEEE------ec
Q 020019 124 SAVAAYDLSTWNR-------LFLTQLSGPSDGKSCADDVTVDAE--GNAYVTDVTGSKIWKVGVK-GEFLSI------IS 187 (332)
Q Consensus 124 ~~l~~~d~~~g~~-------~~~~~l~~~~~~~~~~ndiavd~d--G~lyvtd~~~~~I~~v~~~-g~~~~~------~~ 187 (332)
+.|..||.++++. .....+.. .......+++.++ ++++++-...+.|..+|.. ++.... ..
T Consensus 81 g~v~vwd~~~~~~~~~~~~~~~~~~~~~---~~~~v~~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~ 157 (351)
T 3f3f_A 81 KTVKLWEEDPDQEECSGRRWNKLCTLND---SKGSLYSVKFAPAHLGLKLACLGNDGILRLYDALEPSDLRSWTLTSEMK 157 (351)
T ss_dssp SCEEEEEECTTSCTTSSCSEEEEEEECC---CSSCEEEEEECCGGGCSEEEEEETTCEEEEEECSSTTCTTCCEEEEEEE
T ss_pred CeEEEEecCCCcccccccCcceeeeecc---cCCceeEEEEcCCCCCcEEEEecCCCcEEEecCCChHHhcccccccccc
Confidence 5688999987632 22223321 1356788999999 8888887788888888854 321100 00
Q ss_pred CCCCCCcccccCccccCeEEEccC---ceEEEEeCCCCeEEEEeCCCCCCccceeEEEEecCCCCCCCCeEEEeCCC---
Q 020019 188 SPLFTPKEWYKNLVGLNGIVYHPD---GFLIVIHTFSGNLFKIDIVDGVGEGEEIKLIRVAGGPLSFGDGLELLSPT--- 261 (332)
Q Consensus 188 ~~~~~~p~~~~~~~~~nGi~~~~d---G~Lyva~~~~~~i~~id~~~~~~~~~~~~~v~~~g~~~~~pdGi~~~~dG--- 261 (332)
...+. + .........++++|+ +.++++-...+.+...+...+. ........+ .......+++.++|
T Consensus 158 ~~~~~-~--~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~~~~~~~----~~~~~~~~~-h~~~i~~~~~~p~~~~~ 229 (351)
T 3f3f_A 158 VLSIP-P--ANHLQSDFCLSWCPSRFSPEKLAVSALEQAIIYQRGKDGK----LHVAAKLPG-HKSLIRSISWAPSIGRW 229 (351)
T ss_dssp SCSCC-C--SSCSCCCEEEEECCCSSSCCEEEEEETTEEEEEEECTTSC----EEEEEECCC-CCSCEEEEEECCCSSCS
T ss_pred ccccc-c--CCcccceeEEEeccCCCCCcEEEEecCCCcEEEEccCCCc----eeeeeecCC-CCcceeEEEECCCCCCc
Confidence 00000 0 012345678999997 6444444455556444444441 212222331 22455688888887
Q ss_pred -eEEEEe
Q 020019 262 -KLVVAG 267 (332)
Q Consensus 262 -~l~va~ 267 (332)
+++++.
T Consensus 230 ~~~l~s~ 236 (351)
T 3f3f_A 230 YQLIATG 236 (351)
T ss_dssp SEEEEEE
T ss_pred ceEEEEE
Confidence 666664
|
| >3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A | Back alignment and structure |
|---|
Probab=97.96 E-value=0.0091 Score=53.33 Aligned_cols=166 Identities=8% Similarity=-0.018 Sum_probs=101.3
Q ss_pred ccccceEEcCC----CCEEEEEecCCeEEEEECCCCCCCccceeeeEEecccCcCCCccceEEEeCCC---CeEEEEEeC
Q 020019 45 FFRECAKWDDS----GRRFIVSFLDGGIGQVAVPDDYPPGTVLEEVTLVKDLELTGNGSLGLVLDHPR---NRLLVVAAD 117 (332)
Q Consensus 45 ~~pegia~d~~----g~~~~~~~~~g~I~~vd~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~vd~~~---g~l~v~~~~ 117 (332)
....+++++|+ ...+++...++.|..++..+++. .........+. .......+++.++. ++++++...
T Consensus 19 ~~v~~i~~~p~~~~~~~~~~~~~~~~~v~vw~~~~~~~----~~~~~~~~~~~-~~~~v~~~~~~~~~~~~~~~l~~~~~ 93 (366)
T 3k26_A 19 QPLFGVQFNWHSKEGDPLVFATVGSNRVTLYECHSQGE----IRLLQSYVDAD-ADENFYTCAWTYDSNTSHPLLAVAGS 93 (366)
T ss_dssp SCEEEEEECTTCCTTSCEEEEEEETTEEEEEEECGGGC----EEEEEEEECSC-TTCCEEEEEEEECTTTCCEEEEEEET
T ss_pred CceEEEEEecccCCCCceEEEECCCCEEEEEEcCCCcE----EEeeeeccccC-CCCcEEEEEeccCCCCCCCEEEEecC
Confidence 35568899973 34555665567898888775542 12111111111 11356788888852 344444332
Q ss_pred cCCCccceEEEEECCCCcEEEEEecCCCCCCCCCccceEECC-CCcEEEEeCCCCeEEEEcCC-CceEEEecCCCCCCcc
Q 020019 118 VFGNKYSAVAAYDLSTWNRLFLTQLSGPSDGKSCADDVTVDA-EGNAYVTDVTGSKIWKVGVK-GEFLSIISSPLFTPKE 195 (332)
Q Consensus 118 ~~~~~~~~l~~~d~~~g~~~~~~~l~~~~~~~~~~ndiavd~-dG~lyvtd~~~~~I~~v~~~-g~~~~~~~~~~~~~p~ 195 (332)
.+.|.+||.++++......- .......+++.| +++++++-+..+.|..++.. ++....+.. +.
T Consensus 94 -----dg~i~v~d~~~~~~~~~~~~-----~~~~i~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~--~~--- 158 (366)
T 3k26_A 94 -----RGIIRIINPITMQCIKHYVG-----HGNAINELKFHPRDPNLLLSVSKDHALRLWNIQTDTLVAIFGG--VE--- 158 (366)
T ss_dssp -----TCEEEEECTTTCCEEEEEES-----CCSCEEEEEECSSCTTEEEEEETTSCEEEEETTTTEEEEEECS--TT---
T ss_pred -----CCEEEEEEchhceEeeeecC-----CCCcEEEEEECCCCCCEEEEEeCCCeEEEEEeecCeEEEEecc--cc---
Confidence 45789999998887655432 135678899999 78888888888888888876 444433311 00
Q ss_pred cccCccccCeEEEccCceEEEEeCCCCeEEEEeCCCC
Q 020019 196 WYKNLVGLNGIVYHPDGFLIVIHTFSGNLFKIDIVDG 232 (332)
Q Consensus 196 ~~~~~~~~nGi~~~~dG~Lyva~~~~~~i~~id~~~~ 232 (332)
........++++++|..+++-...+.|..+++.++
T Consensus 159 --~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~ 193 (366)
T 3k26_A 159 --GHRDEVLSADYDLLGEKIMSCGMDHSLKLWRINSK 193 (366)
T ss_dssp --SCSSCEEEEEECTTSSEEEEEETTSCEEEEESCSH
T ss_pred --cccCceeEEEECCCCCEEEEecCCCCEEEEECCCC
Confidence 01234578888888844444445677877777643
|
| >3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=97.95 E-value=0.0026 Score=59.15 Aligned_cols=206 Identities=12% Similarity=0.044 Sum_probs=118.8
Q ss_pred ccccceEEcC-CCCEEEEEecCCeEEEEECCC---CCCCccceeeeEEecccCcCCCccceEEEeCCCCeEEEEEeCcCC
Q 020019 45 FFRECAKWDD-SGRRFIVSFLDGGIGQVAVPD---DYPPGTVLEEVTLVKDLELTGNGSLGLVLDHPRNRLLVVAADVFG 120 (332)
Q Consensus 45 ~~pegia~d~-~g~~~~~~~~~g~I~~vd~~~---~~~~~~~~~~~~~~~~~~~~~~~~~gi~vd~~~g~l~v~~~~~~~ 120 (332)
.....+++++ +++++++...++.|..++..+ +.. .+........ ..+..+++.++ +.++++...
T Consensus 64 ~~V~~~~~s~~~~~~l~s~s~dg~v~vwd~~~~~~~~~----~~~~~~~~h~----~~v~~~~~~~~-~~~l~s~s~--- 131 (437)
T 3gre_A 64 NSITSSAVSPGETPYLITGSDQGVIKIWNLKEIIVGEV----YSSSLTYDCS----STVTQITMIPN-FDAFAVSSK--- 131 (437)
T ss_dssp SCEEEEEEECSSSCEEEEEETTSEEEEEEHHHHHTTCC----CSCSEEEECS----SCEEEEEECTT-SSEEEEEET---
T ss_pred CceEEEEECCCCCCEEEEecCCceEEEeECcccccCcc----cceeeeccCC----CCEEEEEEeCC-CCEEEEEeC---
Confidence 3567899999 999888888889999998765 321 0100111111 25789999996 554444331
Q ss_pred CccceEEEEECC---CCcEEEE--------EecCCCCCCCCCccceE--ECCCCcEEEEeCCCCeEEEEcCC-CceEEEe
Q 020019 121 NKYSAVAAYDLS---TWNRLFL--------TQLSGPSDGKSCADDVT--VDAEGNAYVTDVTGSKIWKVGVK-GEFLSII 186 (332)
Q Consensus 121 ~~~~~l~~~d~~---~g~~~~~--------~~l~~~~~~~~~~ndia--vd~dG~lyvtd~~~~~I~~v~~~-g~~~~~~ 186 (332)
.+.+.+||.+ +++.... +.+. +.........+. ..++++++++-+..+.|..+|.. ++....+
T Consensus 132 --dg~i~vwd~~~~~~~~~~~~~~~~~i~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~ 208 (437)
T 3gre_A 132 --DGQIIVLKVNHYQQESEVKFLNCECIRKINLK-NFGKNEYAVRMRAFVNEEKSLLVALTNLSRVIIFDIRTLERLQII 208 (437)
T ss_dssp --TSEEEEEEEEEEEETTEEEEEEEEEEEEEEGG-GGSSCCCEEEEEEEECSSCEEEEEEETTSEEEEEETTTCCEEEEE
T ss_pred --CCEEEEEEeccccCCceeeccccceeEEEEcc-CcccccCceEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCeeeEEE
Confidence 3568888874 4443322 1221 000123344444 55788888888888999999975 4444333
Q ss_pred cCCCCCCcccccCccccCeEEEccCceEEEEeCCCCeEEEEeCCCCCCccceeEEEEecCCCCCCCCeEEEe----CCCe
Q 020019 187 SSPLFTPKEWYKNLVGLNGIVYHPDGFLIVIHTFSGNLFKIDIVDGVGEGEEIKLIRVAGGPLSFGDGLELL----SPTK 262 (332)
Q Consensus 187 ~~~~~~~p~~~~~~~~~nGi~~~~dG~Lyva~~~~~~i~~id~~~~~~~~~~~~~v~~~g~~~~~pdGi~~~----~dG~ 262 (332)
.... .....+.++++|++.+.++-...+.|..+|+..+ ..+..+... .......+++. ++|+
T Consensus 209 ~~~~--------h~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~----~~~~~~~~~--~~~~v~~~~~~~~~s~~~~ 274 (437)
T 3gre_A 209 ENSP--------RHGAVSSICIDEECCVLILGTTRGIIDIWDIRFN----VLIRSWSFG--DHAPITHVEVCQFYGKNSV 274 (437)
T ss_dssp ECCG--------GGCCEEEEEECTTSCEEEEEETTSCEEEEETTTT----EEEEEEBCT--TCEEEEEEEECTTTCTTEE
T ss_pred ccCC--------CCCceEEEEECCCCCEEEEEcCCCeEEEEEcCCc----cEEEEEecC--CCCceEEEEeccccCCCcc
Confidence 2210 1234679999999955555566788999998876 234444332 11223455333 5676
Q ss_pred EEEEeCCc--eEEEEcCCC
Q 020019 263 LVVAGNPS--ARLVESSDG 279 (332)
Q Consensus 263 l~va~~~~--~~~v~~~dg 279 (332)
++++.... .++.....+
T Consensus 275 ~l~s~~~dg~i~iwd~~~~ 293 (437)
T 3gre_A 275 IVVGGSSKTFLTIWNFVKG 293 (437)
T ss_dssp EEEEESTTEEEEEEETTTT
T ss_pred EEEEEcCCCcEEEEEcCCC
Confidence 66665332 333344555
|
| >3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.94 E-value=0.0018 Score=58.67 Aligned_cols=147 Identities=9% Similarity=0.092 Sum_probs=89.7
Q ss_pred ccceEEEeCCCCeEEEEEeCcCCCccceEEEEECCCCcEEEEEecCCCCCCCCCccceEECCCCcEEEEeCCCCeEEEEc
Q 020019 98 GSLGLVLDHPRNRLLVVAADVFGNKYSAVAAYDLSTWNRLFLTQLSGPSDGKSCADDVTVDAEGNAYVTDVTGSKIWKVG 177 (332)
Q Consensus 98 ~~~gi~vd~~~g~l~v~~~~~~~~~~~~l~~~d~~~g~~~~~~~l~~~~~~~~~~ndiavd~dG~lyvtd~~~~~I~~v~ 177 (332)
....++++|+ |+++++... .+.|.+||.++++......+. .......+.+++.|+|+.+++-+..+.|...+
T Consensus 18 ~v~~l~~sp~-g~~las~~~-----D~~i~iw~~~~~~~~~~~~~~--~~h~~~v~~~~~sp~g~~l~s~s~D~~v~iw~ 89 (345)
T 3fm0_A 18 RCWFLAWNPA-GTLLASCGG-----DRRIRIWGTEGDSWICKSVLS--EGHQRTVRKVAWSPCGNYLASASFDATTCIWK 89 (345)
T ss_dssp CEEEEEECTT-SSCEEEEET-----TSCEEEEEEETTEEEEEEEEC--SSCSSCEEEEEECTTSSEEEEEETTSCEEEEE
T ss_pred cEEEEEECCC-CCEEEEEcC-----CCeEEEEEcCCCcceeeeeec--cccCCcEEEEEECCCCCEEEEEECCCcEEEEE
Confidence 4578999997 775555432 356888998877644333321 11134577899999999888877777665555
Q ss_pred CCC-c--eEEEecCCCCCCcccccCccccCeEEEccCceEEEEeCCCCeEEEEeCCCCCCccceeEEEE-ecCCCCCCCC
Q 020019 178 VKG-E--FLSIISSPLFTPKEWYKNLVGLNGIVYHPDGFLIVIHTFSGNLFKIDIVDGVGEGEEIKLIR-VAGGPLSFGD 253 (332)
Q Consensus 178 ~~g-~--~~~~~~~~~~~~p~~~~~~~~~nGi~~~~dG~Lyva~~~~~~i~~id~~~~~~~~~~~~~v~-~~g~~~~~pd 253 (332)
.+. + ....+.. .....+.++|+|+|.++++-...+.|..+++..+. ....+. .. .......
T Consensus 90 ~~~~~~~~~~~~~~----------h~~~v~~v~~sp~~~~l~s~s~D~~v~iwd~~~~~----~~~~~~~~~-~h~~~v~ 154 (345)
T 3fm0_A 90 KNQDDFECVTTLEG----------HENEVKSVAWAPSGNLLATCSRDKSVWVWEVDEED----EYECVSVLN-SHTQDVK 154 (345)
T ss_dssp ECCC-EEEEEEECC----------CSSCEEEEEECTTSSEEEEEETTSCEEEEEECTTS----CEEEEEEEC-CCCSCEE
T ss_pred ccCCCeEEEEEccC----------CCCCceEEEEeCCCCEEEEEECCCeEEEEECCCCC----CeEEEEEec-CcCCCeE
Confidence 432 2 1221211 11235789999999655566667778777776542 222222 22 1223456
Q ss_pred eEEEeCCCeEEEEe
Q 020019 254 GLELLSPTKLVVAG 267 (332)
Q Consensus 254 Gi~~~~dG~l~va~ 267 (332)
.+++.++|+++++.
T Consensus 155 ~~~~~p~~~~l~s~ 168 (345)
T 3fm0_A 155 HVVWHPSQELLASA 168 (345)
T ss_dssp EEEECSSSSCEEEE
T ss_pred EEEECCCCCEEEEE
Confidence 78899998877764
|
| >1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida} | Back alignment and structure |
|---|
Probab=97.94 E-value=0.0085 Score=60.07 Aligned_cols=200 Identities=16% Similarity=0.163 Sum_probs=104.4
Q ss_pred eEEEeCCCCeEEEEEeCcCC------------C-ccceEEEEECCCCcEEEEEecCCCCC--CCCCc-----cceEECCC
Q 020019 101 GLVLDHPRNRLLVVAADVFG------------N-KYSAVAAYDLSTWNRLFLTQLSGPSD--GKSCA-----DDVTVDAE 160 (332)
Q Consensus 101 gi~vd~~~g~l~v~~~~~~~------------~-~~~~l~~~d~~~g~~~~~~~l~~~~~--~~~~~-----ndiavd~d 160 (332)
.+++|++++.+|+...+... + =.+.|+.+|.++|+..+..+... .+ ....+ .++.+ +
T Consensus 239 ~~~~d~~~~~vy~~~~~g~~w~~~~~~~~~gd~~y~~~v~AlD~~TG~~~W~~~~~~-~d~wd~~~~~~~~l~d~~~--~ 315 (689)
T 1yiq_A 239 SFAYDPELNLLYIGVGNGSLWDPKWRSQAKGDNLFLSSIVAVNADTGEYVWHYQTTP-GDAWDYTATQHMILAELPI--D 315 (689)
T ss_dssp CEEEETTTTEEEEECCCEESSCHHHHHTTCSCCTTTTEEEEEETTTCCEEEEEESST-TCCSCCCCCSCEEEEEEEE--T
T ss_pred ceeEcCCCCEEEEeCCCCCccccCCCCCCCCCceeeeeEEEEEccCCceeEeeecCC-cccccccCCCCcEEEeecc--C
Confidence 57899887899988653110 0 01258999999999988777531 11 00111 12222 3
Q ss_pred Cc---EEEEeCCCCeEEEEcCC-CceEEEecCCC----------CCCcc----------------ccc---CccccCeEE
Q 020019 161 GN---AYVTDVTGSKIWKVGVK-GEFLSIISSPL----------FTPKE----------------WYK---NLVGLNGIV 207 (332)
Q Consensus 161 G~---lyvtd~~~~~I~~v~~~-g~~~~~~~~~~----------~~~p~----------------~~~---~~~~~nGi~ 207 (332)
|. +++.-..+|.++.+|.. |+.+....... ...|. ..+ +...-.+++
T Consensus 316 G~~~~~v~~~~~~G~l~~lD~~tG~~l~~~~~~~~~w~~~~~~~~~~pi~~~~~~~~~~~~~~~~~~p~~~Gg~~w~~~a 395 (689)
T 1yiq_A 316 GKPRKVLMQAPKNGFFYVIDRATGELLSAKGIVPQSWTKGMDMKTGRPILDEENAAYWKNGKRNLVTPAFWGAHDWQPMS 395 (689)
T ss_dssp TEEEEEEEECCTTSEEEEEETTTCCEEEEEESSCCSSEEEEETTTTEEEECHHHHCTTTSSSCEEESSCTTCSSCSSCCE
T ss_pred CcEEEEEEEECCCCeEEEEECCCCCEeccccccccccccccCccCCCcccchhhccccCCCCeeEeCCCcccccCCCcce
Confidence 32 44444456777777754 55432110000 00000 000 111234689
Q ss_pred EccCc-eEEEEeCC--------------------------------------------CCeEEEEeCCCCCCccceeEEE
Q 020019 208 YHPDG-FLIVIHTF--------------------------------------------SGNLFKIDIVDGVGEGEEIKLI 242 (332)
Q Consensus 208 ~~~dG-~Lyva~~~--------------------------------------------~~~i~~id~~~~~~~~~~~~~v 242 (332)
+||+. .+|+.... .+.|..+|+.+++ .+-.+
T Consensus 396 ~dp~~~~~yv~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~~~~~~~~~~~~g~l~A~D~~tG~----~~W~~ 471 (689)
T 1yiq_A 396 YNPDTGLVYIPAHIMSAYYEHIPEAPKRNPFKSMYQLGLRTGMMPEGAEGLLEMAKSWSGKLIAWDPVKQQ----AAWEV 471 (689)
T ss_dssp EETTTTEEEEEEEECCEEEECCSSCCCCCSCTTSCCCSSEECCCCSSHHHHHHHHTTCEEEEEEEETTTTE----EEEEE
T ss_pred ECCCCCEEEEeccccceeeeeccccccccccccccccCccccccCcccccCCCCCCCcceeEEEEECCCCC----eEeEc
Confidence 99986 88886321 2668889998882 33333
Q ss_pred EecCCCCCCCCeEEEeCCCeEEEEeCC-ceEEEEcCCCceEEEEEeeecCCCcccceEEEE-ECCeEEEEEecC
Q 020019 243 RVAGGPLSFGDGLELLSPTKLVVAGNP-SARLVESSDGWETAAVVAKFSGPVHRLATAATV-KDGRVYLNHMLG 314 (332)
Q Consensus 243 ~~~g~~~~~pdGi~~~~dG~l~va~~~-~~~~v~~~dg~~~~~~~~~~~~~~~~~pt~va~-~~g~lyv~~~~g 314 (332)
+.. .....|.....+|.+|++... ..+.+...+| +++-.+..+.....+-+++ .+|+.||....|
T Consensus 472 ~~~---~~~~~g~~~tagglvf~gt~dg~l~a~D~~tG----~~lw~~~~~~~~~~~p~ty~~~G~qyv~~~~G 538 (689)
T 1yiq_A 472 PYV---TIFNGGTLSTAGNLVFEGSADGRVIAYAADTG----EKLWEQPAASGVMAAPVTYSVDGEQYVTFMAG 538 (689)
T ss_dssp EES---SSCCCCEEEETTTEEEEECTTSEEEEEETTTC----CEEEEEECSSCCCSCCEEEEETTEEEEEEEEC
T ss_pred cCC---CCccCccceECCCEEEEECCCCcEEEEECCCC----ccceeeeCCCCcccCceEEEECCEEEEEEEec
Confidence 332 122234555567888887643 3454566677 3332222221111223555 899999865544
|
| >3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633} | Back alignment and structure |
|---|
Probab=97.92 E-value=0.00046 Score=63.03 Aligned_cols=184 Identities=10% Similarity=0.113 Sum_probs=101.5
Q ss_pred cccceEEcCCCCEEEEE-ec--CCeEEEEECCCCCCCccceeeeEEecccCcCCCccceEEEeCCCCeEEEEEeCcCCCc
Q 020019 46 FRECAKWDDSGRRFIVS-FL--DGGIGQVAVPDDYPPGTVLEEVTLVKDLELTGNGSLGLVLDHPRNRLLVVAADVFGNK 122 (332)
Q Consensus 46 ~pegia~d~~g~~~~~~-~~--~g~I~~vd~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~vd~~~g~l~v~~~~~~~~~ 122 (332)
++..++++|+|+.++.. .. ...|+.++..+++. . .+..... ....++.+.++...|+++..
T Consensus 37 ~~~~~~~SpdG~~l~~~~~~~g~~~l~~~d~~~~~~-----~--~l~~~~~---~~~~~~~~spdg~~l~~~~~------ 100 (396)
T 3c5m_A 37 YFYQKCFTQDGKKLLFAGDFDGNRNYYLLNLETQQA-----V--QLTEGKG---DNTFGGFISTDERAFFYVKN------ 100 (396)
T ss_dssp CTTSCCBCTTSCEEEEEECTTSSCEEEEEETTTTEE-----E--ECCCSSC---BCTTTCEECTTSSEEEEEET------
T ss_pred eeecCcCCCCCCEEEEEEecCCCceEEEEECCCCcE-----E--EeecCCC---CccccceECCCCCEEEEEEc------
Confidence 36788999999865443 32 34799999876641 1 2221111 12234678887344555543
Q ss_pred cceEEEEECCCCcEEEEEecCCCCCCCCCccc------------------eEECCCCc-EEEEe----CCCCeEEEEcCC
Q 020019 123 YSAVAAYDLSTWNRLFLTQLSGPSDGKSCADD------------------VTVDAEGN-AYVTD----VTGSKIWKVGVK 179 (332)
Q Consensus 123 ~~~l~~~d~~~g~~~~~~~l~~~~~~~~~~nd------------------iavd~dG~-lyvtd----~~~~~I~~v~~~ 179 (332)
...|+++|+++++.......+ . ...+.+ +.+.|+|+ +++.. .....|+.++.+
T Consensus 101 ~~~l~~~d~~~~~~~~~~~~~--~--~~~~~g~~l~~~~~~~~~~~~~~~~~~spdg~~~~~~~~~~~~~~~~l~~~d~~ 176 (396)
T 3c5m_A 101 ELNLMKVDLETLEEQVIYTVD--E--EWKGYGTWVANSDCTKLVGIEILKRDWQPLTSWEKFAEFYHTNPTCRLIKVDIE 176 (396)
T ss_dssp TTEEEEEETTTCCEEEEEECC--T--TEEEEEEEEECTTSSEEEEEEEEGGGCCCCCSHHHHHHHHHTCCCEEEEEEETT
T ss_pred CCcEEEEECCCCCcEEEEecc--c--ccCCCCCEEEeccCCccccccccccccCCCCcceeeeeeccCCCcceEEEEECC
Confidence 236899999988766555432 1 111111 23455654 33333 345678888876
Q ss_pred -CceEEEecCCCCCCcccccCccccCeEEEcc-Cc-eEEEEeCCC-----CeEEEEeCCCCCCccceeEEEEecCCCCCC
Q 020019 180 -GEFLSIISSPLFTPKEWYKNLVGLNGIVYHP-DG-FLIVIHTFS-----GNLFKIDIVDGVGEGEEIKLIRVAGGPLSF 251 (332)
Q Consensus 180 -g~~~~~~~~~~~~~p~~~~~~~~~nGi~~~~-dG-~Lyva~~~~-----~~i~~id~~~~~~~~~~~~~v~~~g~~~~~ 251 (332)
|+...+... ......++++| || .|++..... .+|+.++++++ ..+.+... .....
T Consensus 177 ~g~~~~~~~~-----------~~~~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~~-----~~~~l~~~-~~~~~ 239 (396)
T 3c5m_A 177 TGELEVIHQD-----------TAWLGHPIYRPFDDSTVGFCHEGPHDLVDARMWLVNEDGS-----NVRKIKEH-AEGES 239 (396)
T ss_dssp TCCEEEEEEE-----------SSCEEEEEEETTEEEEEEEEECSCSSSCSCCCEEEETTSC-----CCEESSCC-CTTEE
T ss_pred CCcEEeeccC-----------CcccccceECCCCCCEEEEEecCCCCCCCceEEEEECCCC-----ceeEeecc-CCCcc
Confidence 444333211 12345789999 77 565554332 47999998765 22222111 11113
Q ss_pred CCeEEEeCCCe-EEEE
Q 020019 252 GDGLELLSPTK-LVVA 266 (332)
Q Consensus 252 pdGi~~~~dG~-l~va 266 (332)
+..+++.+||+ |+++
T Consensus 240 ~~~~~~spdg~~l~~~ 255 (396)
T 3c5m_A 240 CTHEFWIPDGSAMAYV 255 (396)
T ss_dssp EEEEEECTTSSCEEEE
T ss_pred ccceEECCCCCEEEEE
Confidence 44578889987 5554
|
| >3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B* | Back alignment and structure |
|---|
Probab=97.92 E-value=0.011 Score=55.22 Aligned_cols=200 Identities=12% Similarity=0.024 Sum_probs=112.3
Q ss_pred ceEEcCCCCEEEEEecCCeEEEEECCCCCCCccceeeeEEecccCcCCCccceEEEeCCCCeEEEEEeCcCCCccceEEE
Q 020019 49 CAKWDDSGRRFIVSFLDGGIGQVAVPDDYPPGTVLEEVTLVKDLELTGNGSLGLVLDHPRNRLLVVAADVFGNKYSAVAA 128 (332)
Q Consensus 49 gia~d~~g~~~~~~~~~g~I~~vd~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~vd~~~g~l~v~~~~~~~~~~~~l~~ 128 (332)
.+.+ +++.+++...+|.|..++..+++. .. .+.... ..+..+++.++ +.++.+.. .+.+..
T Consensus 127 ~~~~--~~~~l~sgs~dg~i~vwd~~~~~~----~~--~~~~h~----~~V~~l~~~~~-~~l~s~s~------dg~i~v 187 (464)
T 3v7d_B 127 CLQF--EDNYVITGADDKMIRVYDSINKKF----LL--QLSGHD----GGVWALKYAHG-GILVSGST------DRTVRV 187 (464)
T ss_dssp EEEE--ETTEEEEEETTSCEEEEETTTTEE----EE--EECCCS----SCEEEEEECST-TEEEEEET------TSCEEE
T ss_pred EEEE--CCCEEEEEcCCCcEEEEECCCCcE----EE--EEeCCC----cCEEEEEEcCC-CEEEEEeC------CCCEEE
Confidence 3444 456777777789999999876652 11 222111 25788999885 65555543 356899
Q ss_pred EECCCCcEEEEEecCCCCCCCCCccceEEC--CCCcEEEEeCCCCeEEEEcCCCce-EEEecC-CCC----CCccc----
Q 020019 129 YDLSTWNRLFLTQLSGPSDGKSCADDVTVD--AEGNAYVTDVTGSKIWKVGVKGEF-LSIISS-PLF----TPKEW---- 196 (332)
Q Consensus 129 ~d~~~g~~~~~~~l~~~~~~~~~~ndiavd--~dG~lyvtd~~~~~I~~v~~~g~~-~~~~~~-~~~----~~p~~---- 196 (332)
||.++++......- . ......+++. ++++.+++-+..+.|..++..... ...... ... ..|..
T Consensus 188 wd~~~~~~~~~~~~--h---~~~v~~l~~~~~~~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 262 (464)
T 3v7d_B 188 WDIKKGCCTHVFEG--H---NSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYF 262 (464)
T ss_dssp EETTTTEEEEEECC--C---SSCEEEEEEEESSSCEEEEEEETTSCEEEEECCCCCCC------CCSSEEESCGGGCTTE
T ss_pred EECCCCcEEEEECC--C---CCccEEEEEecCCCCCEEEEEcCCCcEEEeeCCCCcccccccccCCcceEeeccCCCeEE
Confidence 99998876544331 1 2345556666 567777877778888777765321 110000 000 00000
Q ss_pred --ccCccccCeEEEccCceEEEEeCCCCeEEEEeCCCCCCccceeEEEEecCCCCCCCCeEEEeCCCeEEEEe-C-CceE
Q 020019 197 --YKNLVGLNGIVYHPDGFLIVIHTFSGNLFKIDIVDGVGEGEEIKLIRVAGGPLSFGDGLELLSPTKLVVAG-N-PSAR 272 (332)
Q Consensus 197 --~~~~~~~nGi~~~~dG~Lyva~~~~~~i~~id~~~~~~~~~~~~~v~~~g~~~~~pdGi~~~~dG~l~va~-~-~~~~ 272 (332)
....-...-.++++++.+.++-...+.|..+|+.++ +.+..+.. .......++++++|+.+++. . ...+
T Consensus 263 ~~~~~~~~~~v~~~~~~~~~l~~~~~d~~i~vwd~~~~----~~~~~~~~---~~~~v~~~~~~~~~~~l~sg~~dg~i~ 335 (464)
T 3v7d_B 263 VGVLRGHMASVRTVSGHGNIVVSGSYDNTLIVWDVAQM----KCLYILSG---HTDRIYSTIYDHERKRCISASMDTTIR 335 (464)
T ss_dssp EEEECCCSSCEEEEEEETTEEEEEETTSCEEEEETTTT----EEEEEECC---CSSCEEEEEEETTTTEEEEEETTSCEE
T ss_pred EEEccCccceEEEEcCCCCEEEEEeCCCeEEEEECCCC----cEEEEecC---CCCCEEEEEEcCCCCEEEEEeCCCcEE
Confidence 000001122345677844444556778999998876 23333321 23456688999998776665 3 3344
Q ss_pred EEEcCCC
Q 020019 273 LVESSDG 279 (332)
Q Consensus 273 ~v~~~dg 279 (332)
+.....+
T Consensus 336 vwd~~~~ 342 (464)
T 3v7d_B 336 IWDLENG 342 (464)
T ss_dssp EEETTTT
T ss_pred EEECCCC
Confidence 4455556
|
| >1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A | Back alignment and structure |
|---|
Probab=97.91 E-value=0.0011 Score=59.14 Aligned_cols=190 Identities=8% Similarity=-0.040 Sum_probs=116.1
Q ss_pred cccceEEcCCCCEEEEEecCCeEEEEECCCCCCCccceeeeEEecccCcCCCccceEEEeCCCCe--EEEEEeCcCCCcc
Q 020019 46 FRECAKWDDSGRRFIVSFLDGGIGQVAVPDDYPPGTVLEEVTLVKDLELTGNGSLGLVLDHPRNR--LLVVAADVFGNKY 123 (332)
Q Consensus 46 ~pegia~d~~g~~~~~~~~~g~I~~vd~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~vd~~~g~--l~v~~~~~~~~~~ 123 (332)
...+++++++++.+++...++.|..++..+++.. ......... ......+++.++ ++ |+++.. .
T Consensus 13 ~v~~~~~s~~~~~l~~~~~d~~v~iw~~~~~~~~---~~~~~~~~~----~~~v~~~~~~~~-~~~~l~~~~~------d 78 (342)
T 1yfq_A 13 YISDIKIIPSKSLLLITSWDGSLTVYKFDIQAKN---VDLLQSLRY----KHPLLCCNFIDN-TDLQIYVGTV------Q 78 (342)
T ss_dssp CEEEEEEEGGGTEEEEEETTSEEEEEEEETTTTE---EEEEEEEEC----SSCEEEEEEEES-SSEEEEEEET------T
T ss_pred cEEEEEEcCCCCEEEEEcCCCeEEEEEeCCCCcc---ccceeeeec----CCceEEEEECCC-CCcEEEEEcC------C
Confidence 4567899999998887777898888887655410 000112211 125788999987 66 444443 3
Q ss_pred ceEEEEEC-CCCcEEEEEecCCCCCCCCCccceEECCCCcEEEEeCCCCeEEEEcCCC---ceEEEecC--CCCCCcccc
Q 020019 124 SAVAAYDL-STWNRLFLTQLSGPSDGKSCADDVTVDAEGNAYVTDVTGSKIWKVGVKG---EFLSIISS--PLFTPKEWY 197 (332)
Q Consensus 124 ~~l~~~d~-~~g~~~~~~~l~~~~~~~~~~ndiavd~dG~lyvtd~~~~~I~~v~~~g---~~~~~~~~--~~~~~p~~~ 197 (332)
+.|..||. ++++.. .+.+. ........+++.+ ++.+++-+..+.|..++... ........ ..+.
T Consensus 79 g~i~~wd~~~~~~~~---~~~~~-~~~~~v~~l~~~~-~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~----- 148 (342)
T 1yfq_A 79 GEILKVDLIGSPSFQ---ALTNN-EANLGICRICKYG-DDKLIAASWDGLIEVIDPRNYGDGVIAVKNLNSNNTK----- 148 (342)
T ss_dssp SCEEEECSSSSSSEE---ECBSC-CCCSCEEEEEEET-TTEEEEEETTSEEEEECHHHHTTBCEEEEESCSSSSS-----
T ss_pred CeEEEEEeccCCceE---ecccc-CCCCceEEEEeCC-CCEEEEEcCCCeEEEEcccccccccccccCCeeeEEe-----
Confidence 57899999 887663 23210 0134567899999 88888888888888888542 00000000 0111
Q ss_pred cCccccCeEEEccCceEEEEeCCCCeEEEEeCCC-CCCccceeEEEEecCCCCCCCCeEEEeC-CCeEEEEe
Q 020019 198 KNLVGLNGIVYHPDGFLIVIHTFSGNLFKIDIVD-GVGEGEEIKLIRVAGGPLSFGDGLELLS-PTKLVVAG 267 (332)
Q Consensus 198 ~~~~~~nGi~~~~dG~Lyva~~~~~~i~~id~~~-~~~~~~~~~~v~~~g~~~~~pdGi~~~~-dG~l~va~ 267 (332)
.......+++++++ ++++ ...+.|..+++.+ +.. ........ .......+++.+ +|+++++.
T Consensus 149 -~~~~v~~~~~~~~~-l~~~-~~d~~i~i~d~~~~~~~---~~~~~~~~--~~~~i~~i~~~~~~~~~l~~~ 212 (342)
T 1yfq_A 149 -VKNKIFTMDTNSSR-LIVG-MNNSQVQWFRLPLCEDD---NGTIEESG--LKYQIRDVALLPKEQEGYACS 212 (342)
T ss_dssp -SCCCEEEEEECSSE-EEEE-ESTTEEEEEESSCCTTC---CCEEEECS--CSSCEEEEEECSGGGCEEEEE
T ss_pred -eCCceEEEEecCCc-EEEE-eCCCeEEEEECCccccc---cceeeecC--CCCceeEEEECCCCCCEEEEE
Confidence 12346789999888 5555 4567899999887 421 22222221 223567889999 88877775
|
| >3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=97.91 E-value=0.0034 Score=56.57 Aligned_cols=195 Identities=13% Similarity=0.059 Sum_probs=118.1
Q ss_pred CCCCEEEEEecCCeEEEEECCCCCCCccceeeeEEecc-cCcCCCccceEEEeCCCCeEEEEEeCcCCCccceEEEEECC
Q 020019 54 DSGRRFIVSFLDGGIGQVAVPDDYPPGTVLEEVTLVKD-LELTGNGSLGLVLDHPRNRLLVVAADVFGNKYSAVAAYDLS 132 (332)
Q Consensus 54 ~~g~~~~~~~~~g~I~~vd~~~~~~~~~~~~~~~~~~~-~~~~~~~~~gi~vd~~~g~l~v~~~~~~~~~~~~l~~~d~~ 132 (332)
.+++++++...+|.|..++..+++. .. .+... .....-.|. +.....++.+.+-+. .+.+..||.+
T Consensus 46 ~d~~~l~sg~~Dg~v~iwd~~~~~~----~~--~~~~~~v~~~~~~~~-~~s~s~D~~i~~w~~------~~~~~~~~~~ 112 (343)
T 3lrv_A 46 YDKWVCMCRCEDGALHFTQLKDSKT----IT--TITTPNPRTGGEHPA-IISRGPCNRLLLLYP------GNQITILDSK 112 (343)
T ss_dssp EEEEEEEEEEETTEEEEEEESSSSC----EE--EEEEECCCTTCCCCS-EEEECSTTEEEEEET------TTEEEEEETT
T ss_pred CCCCEEEEECCCCcEEEEECCCCcE----EE--EEecCCceeeeeCCc-eEEecCCCeEEEEEc------cCceEEeecC
Confidence 4566777777789999999887763 12 22111 000001233 333333366666554 2356678888
Q ss_pred CCcEEEEEecCCCCCCCCCccceEECC--CCcEEEEeCCCCeEEEEcCC-CceEEEecCCCCCCcccccCccccCeEEEc
Q 020019 133 TWNRLFLTQLSGPSDGKSCADDVTVDA--EGNAYVTDVTGSKIWKVGVK-GEFLSIISSPLFTPKEWYKNLVGLNGIVYH 209 (332)
Q Consensus 133 ~g~~~~~~~l~~~~~~~~~~ndiavd~--dG~lyvtd~~~~~I~~v~~~-g~~~~~~~~~~~~~p~~~~~~~~~nGi~~~ 209 (332)
+++........ . ......++++| +|+.+++-+..+.|..+|.. ++........ .....+.++++
T Consensus 113 ~~~~~~~~~~~--~--~~~v~~~~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~---------~~~~i~~~~~~ 179 (343)
T 3lrv_A 113 TNKVLREIEVD--S--ANEIIYMYGHNEVNTEYFIWADNRGTIGFQSYEDDSQYIVHSAK---------SDVEYSSGVLH 179 (343)
T ss_dssp TCCEEEEEECC--C--SSCEEEEECCC---CCEEEEEETTCCEEEEESSSSCEEEEECCC---------SSCCCCEEEEC
T ss_pred CcceeEEeecC--C--CCCEEEEEcCCCCCCCEEEEEeCCCcEEEEECCCCcEEEEEecC---------CCCceEEEEEC
Confidence 87766555442 1 23567899999 89999988888999888876 4443322111 11236799999
Q ss_pred cCceEEEEeCCCCeEEEEeCCCCCCccceeEEEEecCCCCCCCCeEEEeCCCeEEEEeC-CceEEEEcCCC
Q 020019 210 PDGFLIVIHTFSGNLFKIDIVDGVGEGEEIKLIRVAGGPLSFGDGLELLSPTKLVVAGN-PSARLVESSDG 279 (332)
Q Consensus 210 ~dG~Lyva~~~~~~i~~id~~~~~~~~~~~~~v~~~g~~~~~pdGi~~~~dG~l~va~~-~~~~~v~~~dg 279 (332)
|||.++++-...+.|..+|..+++. ....+.. ........+++.++|.++++.. ...++-....+
T Consensus 180 pdg~~lasg~~dg~i~iwd~~~~~~---~~~~~~~--~h~~~v~~l~fs~~g~~l~s~~~~~v~iwd~~~~ 245 (343)
T 3lrv_A 180 KDSLLLALYSPDGILDVYNLSSPDQ---ASSRFPV--DEEAKIKEVKFADNGYWMVVECDQTVVCFDLRKD 245 (343)
T ss_dssp TTSCEEEEECTTSCEEEEESSCTTS---CCEECCC--CTTSCEEEEEECTTSSEEEEEESSBEEEEETTSS
T ss_pred CCCCEEEEEcCCCEEEEEECCCCCC---CccEEec--cCCCCEEEEEEeCCCCEEEEEeCCeEEEEEcCCC
Confidence 9997777667788899999987732 1133332 1234567899999988777753 33333333333
|
| >3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633} | Back alignment and structure |
|---|
Probab=97.90 E-value=0.00046 Score=63.01 Aligned_cols=182 Identities=12% Similarity=0.056 Sum_probs=98.8
Q ss_pred ceEEcCCCCEEEEEecCCeEEEEECCCCCCCccceeeeEEecccCcCCCccce--EE----------------EeCCCCe
Q 020019 49 CAKWDDSGRRFIVSFLDGGIGQVAVPDDYPPGTVLEEVTLVKDLELTGNGSLG--LV----------------LDHPRNR 110 (332)
Q Consensus 49 gia~d~~g~~~~~~~~~g~I~~vd~~~~~~~~~~~~~~~~~~~~~~~~~~~~g--i~----------------vd~~~g~ 110 (332)
++.|+++|+.++.....+.|++++..+++. . .+...+.. ..+.| |+ +.++ ++
T Consensus 85 ~~~~spdg~~l~~~~~~~~l~~~d~~~~~~-----~--~~~~~~~~--~~~~g~~l~~~~~~~~~~~~~~~~~~spd-g~ 154 (396)
T 3c5m_A 85 GGFISTDERAFFYVKNELNLMKVDLETLEE-----Q--VIYTVDEE--WKGYGTWVANSDCTKLVGIEILKRDWQPL-TS 154 (396)
T ss_dssp TCEECTTSSEEEEEETTTEEEEEETTTCCE-----E--EEEECCTT--EEEEEEEEECTTSSEEEEEEEEGGGCCCC-CS
T ss_pred cceECCCCCEEEEEEcCCcEEEEECCCCCc-----E--EEEecccc--cCCCCCEEEeccCCccccccccccccCCC-Cc
Confidence 378999998775554556899999887652 1 22221110 01111 11 1222 11
Q ss_pred -EEEEEeCcCCCccceEEEEECCCCcEEEEEecCCCCCCCCCccceEECC-CCc-EEE-EeCCC----CeEEEEcCCCce
Q 020019 111 -LLVVAADVFGNKYSAVAAYDLSTWNRLFLTQLSGPSDGKSCADDVTVDA-EGN-AYV-TDVTG----SKIWKVGVKGEF 182 (332)
Q Consensus 111 -l~v~~~~~~~~~~~~l~~~d~~~g~~~~~~~l~~~~~~~~~~ndiavd~-dG~-lyv-td~~~----~~I~~v~~~g~~ 182 (332)
+.+.... .......|+++|+++++....... ......+++.| +|+ +++ ++... ..|+.++.++..
T Consensus 155 ~~~~~~~~-~~~~~~~l~~~d~~~g~~~~~~~~------~~~~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~~~ 227 (396)
T 3c5m_A 155 WEKFAEFY-HTNPTCRLIKVDIETGELEVIHQD------TAWLGHPIYRPFDDSTVGFCHEGPHDLVDARMWLVNEDGSN 227 (396)
T ss_dssp HHHHHHHH-HTCCCEEEEEEETTTCCEEEEEEE------SSCEEEEEEETTEEEEEEEEECSCSSSCSCCCEEEETTSCC
T ss_pred ceeeeeec-cCCCcceEEEEECCCCcEEeeccC------CcccccceECCCCCCEEEEEecCCCCCCCceEEEEECCCCc
Confidence 1111000 001235788999998876544322 23456788999 675 554 44222 579999987543
Q ss_pred EEEecCCCCCCcccccCccccCeEEEccCc-eEEEEeCC--CCe--EEEEeCCCCCCccceeEEEE-ecCCCCCCCCeEE
Q 020019 183 LSIISSPLFTPKEWYKNLVGLNGIVYHPDG-FLIVIHTF--SGN--LFKIDIVDGVGEGEEIKLIR-VAGGPLSFGDGLE 256 (332)
Q Consensus 183 ~~~~~~~~~~~p~~~~~~~~~nGi~~~~dG-~Lyva~~~--~~~--i~~id~~~~~~~~~~~~~v~-~~g~~~~~pdGi~ 256 (332)
...+.... .......++|+||| .|+++... ... |+.+++.++ ..+.+. .+ ... ++
T Consensus 228 ~~~l~~~~--------~~~~~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~g-----~~~~l~~~~-----~~~-~~ 288 (396)
T 3c5m_A 228 VRKIKEHA--------EGESCTHEFWIPDGSAMAYVSYFKGQTDRVIYKANPETL-----ENEEVMVMP-----PCS-HL 288 (396)
T ss_dssp CEESSCCC--------TTEEEEEEEECTTSSCEEEEEEETTTCCEEEEEECTTTC-----CEEEEEECC-----SEE-EE
T ss_pred eeEeeccC--------CCccccceEECCCCCEEEEEecCCCCccceEEEEECCCC-----CeEEeeeCC-----CCC-CC
Confidence 22221110 01234578999999 66665332 334 999999876 233332 22 112 77
Q ss_pred EeC-CCeEEEE
Q 020019 257 LLS-PTKLVVA 266 (332)
Q Consensus 257 ~~~-dG~l~va 266 (332)
+.+ ||++++.
T Consensus 289 ~s~~dg~~l~~ 299 (396)
T 3c5m_A 289 MSNFDGSLMVG 299 (396)
T ss_dssp EECSSSSEEEE
T ss_pred ccCCCCceEEE
Confidence 888 9887775
|
| >2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A* | Back alignment and structure |
|---|
Probab=97.87 E-value=0.015 Score=57.04 Aligned_cols=116 Identities=11% Similarity=0.060 Sum_probs=71.8
Q ss_pred eEEcCCCCEEEEEecCCeEEEEEC-CCCCCCccceeeeEEecccCcCC---------CccceEEEeCCCCeEEEEEeCcC
Q 020019 50 AKWDDSGRRFIVSFLDGGIGQVAV-PDDYPPGTVLEEVTLVKDLELTG---------NGSLGLVLDHPRNRLLVVAADVF 119 (332)
Q Consensus 50 ia~d~~g~~~~~~~~~g~I~~vd~-~~~~~~~~~~~~~~~~~~~~~~~---------~~~~gi~vd~~~g~l~v~~~~~~ 119 (332)
+++. ++.+|+.+..++.|+.+|. .+++. .|...+.... ....+++++. +++|+...
T Consensus 58 P~v~-~g~vyv~~~~~~~v~AlD~~~tG~~--------~W~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~v~v~~~--- 123 (571)
T 2ad6_A 58 PLVI-GDMMYVHSAFPNNTYALNLNDPGKI--------VWQHKPKQDASTKAVMCCDVVDRGLAYGA--GQIVKKQA--- 123 (571)
T ss_dssp CEEE-TTEEEEECSTTTCEEEEETTCTTSE--------EEEECCCCCGGGGGGCTTCSCCCCCEEET--TEEEEECT---
T ss_pred cEEE-CCEEEEEeCCCCEEEEEeCCCCccE--------EEEEcCCCCccccccccccccccccEEEC--CEEEEEeC---
Confidence 4443 4566665543689999999 77762 3443222110 0113567764 89999864
Q ss_pred CCccceEEEEECCCCcEEEEEecCCCCCCCCCccceEECCCCcEEEEeCC-----CCeEEEEcCC-CceE
Q 020019 120 GNKYSAVAAYDLSTWNRLFLTQLSGPSDGKSCADDVTVDAEGNAYVTDVT-----GSKIWKVGVK-GEFL 183 (332)
Q Consensus 120 ~~~~~~l~~~d~~~g~~~~~~~l~~~~~~~~~~ndiavd~dG~lyvtd~~-----~~~I~~v~~~-g~~~ 183 (332)
.+.|+.+|.++|++.+..++..+..+.......++. +|.+|+.... .+.|+.+|+. |+..
T Consensus 124 ---dg~l~alD~~tG~~~W~~~~~~~~~~~~~~~~P~v~-~g~v~vg~~~~~~~~~g~v~a~D~~tG~~~ 189 (571)
T 2ad6_A 124 ---NGHLLALDAKTGKINWEVEVCDPKVGSTLTQAPFVA-KDTVLMGCSGAELGVRGAVNAFDLKTGELK 189 (571)
T ss_dssp ---TSEEEEEETTTCCEEEEEECCCGGGTCBCCSCCEEE-TTEEEEECBCGGGTCCCEEEEEETTTCCEE
T ss_pred ---CCEEEEEECCCCCEEEEecCCCCCccceeccCCEEE-CCEEEEEecCCccCCCCEEEEEECCCCcEE
Confidence 357999999999998887764211111112223333 5689998764 6899999986 7754
|
| >4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.86 E-value=0.0045 Score=56.30 Aligned_cols=166 Identities=13% Similarity=0.059 Sum_probs=100.2
Q ss_pred cccceEEcC-CCCEEEEEecCCeEEEEECCCCCCCccceeeeEEecccCcCCCccceEEEeCCC--CeEEEEEeCcCCCc
Q 020019 46 FRECAKWDD-SGRRFIVSFLDGGIGQVAVPDDYPPGTVLEEVTLVKDLELTGNGSLGLVLDHPR--NRLLVVAADVFGNK 122 (332)
Q Consensus 46 ~pegia~d~-~g~~~~~~~~~g~I~~vd~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~vd~~~--g~l~v~~~~~~~~~ 122 (332)
....+++.+ +++++++...++.|..++..+++. . .....+ .....+.+.+.. +.++++...
T Consensus 101 ~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~----~---~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~----- 164 (408)
T 4a11_B 101 SVETVQWYPHDTGMFTSSSFDKTLKVWDTNTLQT----A---DVFNFE----ETVYSHHMSPVSTKHCLVAVGTR----- 164 (408)
T ss_dssp CEEEEEECTTCTTCEEEEETTSEEEEEETTTTEE----E---EEEECS----SCEEEEEECSSCSSCCEEEEEES-----
T ss_pred cEEEEEEccCCCcEEEEEeCCCeEEEeeCCCCcc----c---eeccCC----CceeeeEeecCCCCCcEEEEEcC-----
Confidence 445688999 666777777789999999876652 1 122111 145566776631 334444332
Q ss_pred cceEEEEECCCCcEEEEEecCCCCCCCCCccceEECCCCc-EEEEeCCCCeEEEEcCCC-c-eEEEecCCCCC---Ccc-
Q 020019 123 YSAVAAYDLSTWNRLFLTQLSGPSDGKSCADDVTVDAEGN-AYVTDVTGSKIWKVGVKG-E-FLSIISSPLFT---PKE- 195 (332)
Q Consensus 123 ~~~l~~~d~~~g~~~~~~~l~~~~~~~~~~ndiavd~dG~-lyvtd~~~~~I~~v~~~g-~-~~~~~~~~~~~---~p~- 195 (332)
.+.+..||.++++....... .......+++.|++. ++++-...+.|..++... + ....+...... ...
T Consensus 165 ~~~v~~~d~~~~~~~~~~~~-----~~~~v~~~~~~~~~~~ll~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~ 239 (408)
T 4a11_B 165 GPKVQLCDLKSGSCSHILQG-----HRQEILAVSWSPRYDYILATASADSRVKLWDVRRASGCLITLDQHNGKKSQAVES 239 (408)
T ss_dssp SSSEEEEESSSSCCCEEECC-----CCSCEEEEEECSSCTTEEEEEETTSCEEEEETTCSSCCSEECCTTTTCSCCCTTT
T ss_pred CCeEEEEeCCCcceeeeecC-----CCCcEEEEEECCCCCcEEEEEcCCCcEEEEECCCCCcccccccccccccceeecc
Confidence 35689999998876543321 124567899999986 788877888888888652 2 11111110000 000
Q ss_pred -cccCccccCeEEEccCceEEEEeCCCCeEEEEeCCCC
Q 020019 196 -WYKNLVGLNGIVYHPDGFLIVIHTFSGNLFKIDIVDG 232 (332)
Q Consensus 196 -~~~~~~~~nGi~~~~dG~Lyva~~~~~~i~~id~~~~ 232 (332)
..........++++|+|..+++-...+.|..+++.++
T Consensus 240 ~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~ 277 (408)
T 4a11_B 240 ANTAHNGKVNGLCFTSDGLHLLTVGTDNRMRLWNSSNG 277 (408)
T ss_dssp SSCSCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTC
T ss_pred ccccccCceeEEEEcCCCCEEEEecCCCeEEEEECCCC
Confidence 0112345688999999944444456677888888764
|
| >1tl2_A L10, protein (tachylectin-2); animal lectin, horseshoe CRAB, N-acetylglucosamine, beta- propeller, sugar binding protein; HET: NDG; 2.00A {Tachypleus tridentatus} SCOP: b.67.1.1 PDB: 3kif_A* 3kih_A* | Back alignment and structure |
|---|
Probab=97.85 E-value=0.00031 Score=60.09 Aligned_cols=158 Identities=13% Similarity=0.102 Sum_probs=93.5
Q ss_pred cccceEEcCCCCEEEEEecCCeEEEEECCCCCCCccceeeeEEecc---cCcCC-CccceEEEeCCCCeEEEEEeCcCCC
Q 020019 46 FRECAKWDDSGRRFIVSFLDGGIGQVAVPDDYPPGTVLEEVTLVKD---LELTG-NGSLGLVLDHPRNRLLVVAADVFGN 121 (332)
Q Consensus 46 ~pegia~d~~g~~~~~~~~~g~I~~vd~~~~~~~~~~~~~~~~~~~---~~~~~-~~~~gi~vd~~~g~l~v~~~~~~~~ 121 (332)
....++++|+|++|.+ .+|.|+++++.+.+. + .|... .+..+ +.-..+.+|++ |.||++ .+
T Consensus 42 ~~~~laf~P~G~LYaV--~~G~Ly~~~~~t~~~-----~--~W~~s~t~IG~~Gw~~F~a~~fD~~-G~LYav-~d---- 106 (236)
T 1tl2_A 42 NFKFLFLSPGGELYGV--LNDKIYKGTPPTHDN-----D--NWMGRAKKIGNGGWNQFQFLFFDPN-GYLYAV-SK---- 106 (236)
T ss_dssp TCSEEEECTTSCEEEE--ETTEEEEESCCCSTT-----C--CHHHHCEEEECSCGGGCSEEEECTT-SCEEEE-ET----
T ss_pred cceeEEECCCccEEEE--eCCeEEEECCCCCCc-----c--cccccccEecccccccceEEEECCC-CCEEEe-CC----
Confidence 5568999999998877 689999999865432 1 23321 01011 12367899996 999999 32
Q ss_pred ccceEEEEECCC-CcEEEE---EecCCCCC-CCCCccceEECCCCcEEEEeCCCCeEEEEc-CCCceEEEecCCCC-CCc
Q 020019 122 KYSAVAAYDLST-WNRLFL---TQLSGPSD-GKSCADDVTVDAEGNAYVTDVTGSKIWKVG-VKGEFLSIISSPLF-TPK 194 (332)
Q Consensus 122 ~~~~l~~~d~~~-g~~~~~---~~l~~~~~-~~~~~ndiavd~dG~lyvtd~~~~~I~~v~-~~g~~~~~~~~~~~-~~p 194 (332)
+.|+++++.+ +.-.+. ..+ .. +-....-+.++|+|+||... .+.++|-. |.+.-..++..... ...
T Consensus 107 --G~iyr~~pP~~~~~~Wl~~a~~v---g~~gw~~~~~lff~p~G~Lyav~--dg~lyr~~~P~~~~~~wl~~~~~~g~~ 179 (236)
T 1tl2_A 107 --DKLYKASPPQSDTDNWIARATEV---GSGGWSGFKFLFFHPNGYLYAVH--GQQFYKALPPVSNQDNWLARATKIGQG 179 (236)
T ss_dssp --TEEEEESCCCSTTCCHHHHSEEE---ECSSGGGEEEEEECTTSCEEEEE--TTEEEEECCCSSTTCCHHHHCEEEESS
T ss_pred --CEEEEeCCCcCCCCceeccccEe---ccCCCCceEEEEECCCceEEEEe--CCcEEecCCCCCCCcccccccceeccC
Confidence 5788888743 221110 011 01 11233679999999999888 66787744 32221111110000 000
Q ss_pred ccccCccccCeEEEccCceEEEEeCCCCeEEEEeCCC
Q 020019 195 EWYKNLVGLNGIVYHPDGFLIVIHTFSGNLFKIDIVD 231 (332)
Q Consensus 195 ~~~~~~~~~nGi~~~~dG~Lyva~~~~~~i~~id~~~ 231 (332)
......=+.++++|.||..+ ++++|+....+
T Consensus 180 ----g~~~yr~l~f~~~G~l~~v~--~g~~Y~~~~p~ 210 (236)
T 1tl2_A 180 ----GWDTFKFLFFSSVGTLFGVQ--GGKFYEDYPPS 210 (236)
T ss_dssp ----SGGGEEEEEECTTSCEEEEE--TTEEEEESCCC
T ss_pred ----CcceEEEEEECCCCcEEEEe--CCeEEecCCcc
Confidence 00111226699999999988 88999997664
|
| >1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1 | Back alignment and structure |
|---|
Probab=97.85 E-value=0.014 Score=58.28 Aligned_cols=160 Identities=13% Similarity=0.052 Sum_probs=94.6
Q ss_pred CCCEEEEEecCCeEEEEECCCCCCCccceeeeEEecccCcCC---------CccceEEEeCCCCeEEEEEeCcCCCccce
Q 020019 55 SGRRFIVSFLDGGIGQVAVPDDYPPGTVLEEVTLVKDLELTG---------NGSLGLVLDHPRNRLLVVAADVFGNKYSA 125 (332)
Q Consensus 55 ~g~~~~~~~~~g~I~~vd~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~gi~vd~~~g~l~v~~~~~~~~~~~~ 125 (332)
+|.+|+++. .+.|+.+|..+++. .|..++.... ....+++++. ++||+... .+.
T Consensus 77 ~g~vyv~~~-~~~v~AlD~~tG~~--------~W~~~~~~~~~~~~~~~~~~~~~~~a~~~--~~v~v~~~------dg~ 139 (677)
T 1kb0_A 77 DGIMYVSAS-WSVVHAIDTRTGNR--------IWTYDPQIDRSTGFKGCCDVVNRGVALWK--GKVYVGAW------DGR 139 (677)
T ss_dssp TTEEEEECG-GGCEEEEETTTTEE--------EEEECCCCCGGGGGGSSSCSCCCCCEEET--TEEEEECT------TSE
T ss_pred CCEEEEECC-CCeEEEEECCCCcE--------EEEEcCCCCccccccccccCCCCCceEEC--CEEEEEcC------CCE
Confidence 455665543 58899999988862 3443222110 1124677764 89999864 357
Q ss_pred EEEEECCCCcEEEEEecC-CCCCCCCCccceEECCCCcEEEEeCC-----CCeEEEEcCC-CceEEEecCC--CCCCcc-
Q 020019 126 VAAYDLSTWNRLFLTQLS-GPSDGKSCADDVTVDAEGNAYVTDVT-----GSKIWKVGVK-GEFLSIISSP--LFTPKE- 195 (332)
Q Consensus 126 l~~~d~~~g~~~~~~~l~-~~~~~~~~~ndiavd~dG~lyvtd~~-----~~~I~~v~~~-g~~~~~~~~~--~~~~p~- 195 (332)
|+.+|.++|++.+..... .+..........+++ +|.+|+.... .+.|+.+|.. |+..-..... ....+.
T Consensus 140 l~alD~~tG~~~W~~~~~~~~~~~~~~~~~p~v~-~~~v~v~~~~~~~~~~g~v~a~D~~tG~~~W~~~~~~~~~~~~~~ 218 (677)
T 1kb0_A 140 LIALDAATGKEVWHQNTFEGQKGSLTITGAPRVF-KGKVIIGNGGAEYGVRGYITAYDAETGERKWRWFSVPGDPSKPFE 218 (677)
T ss_dssp EEEEETTTCCEEEEEETTTTCCSSCBCCSCCEEE-TTEEEECCBCTTTCCBCEEEEEETTTCCEEEEEESSCCCTTSCCS
T ss_pred EEEEECCCCCEEeeecCCcCcCcCcccccCcEEE-CCEEEEEecccccCCCCEEEEEECCCCcEEEEeccCCCCcccccc
Confidence 999999999998887763 111111222223343 4679998763 5889999975 7754322211 000000
Q ss_pred ----------cc---------cCccccCeEEEccCc-eEEEEeCCC------------------CeEEEEeCCCC
Q 020019 196 ----------WY---------KNLVGLNGIVYHPDG-FLIVIHTFS------------------GNLFKIDIVDG 232 (332)
Q Consensus 196 ----------~~---------~~~~~~nGi~~~~dG-~Lyva~~~~------------------~~i~~id~~~~ 232 (332)
+. .+...-..+++++++ .||+..... +.|+.+|++++
T Consensus 219 ~~~~~~g~~~w~~~g~~~~~~~g~~~w~~~~~d~~~~~vy~~~~~~~~w~~~~~~~~~gd~~~~~sv~AlD~~TG 293 (677)
T 1kb0_A 219 DESMKRAARTWDPSGKWWEAGGGGTMWDSMTFDAELNTMYVGTGNGSPWSHKVRSPKGGDNLYLASIVALDPDTG 293 (677)
T ss_dssp SHHHHHHHTTSCGGGCHHHHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHSTTCCCCTTTTEEEEECTTTC
T ss_pred ccccccccccccccCceeEeCCCcccccceeEcCCCCEEEEECCCCccccCCCCCccCCCCeeeEEEEEEECCCC
Confidence 00 000111468999987 999876542 25999999988
|
| >1flg_A Protein (quinoprotein ethanol dehydrogenase); superbarrel, oxidoreductase; HET: PQQ; 2.60A {Pseudomonas aeruginosa} SCOP: b.70.1.1 | Back alignment and structure |
|---|
Probab=97.84 E-value=0.028 Score=55.20 Aligned_cols=203 Identities=17% Similarity=0.145 Sum_probs=108.4
Q ss_pred eEEEeCCCCeEEEEEeCcCC------------------CccceEEEEECCCCcEEEEEecCCCCC-CCCCc-cceEEC--
Q 020019 101 GLVLDHPRNRLLVVAADVFG------------------NKYSAVAAYDLSTWNRLFLTQLSGPSD-GKSCA-DDVTVD-- 158 (332)
Q Consensus 101 gi~vd~~~g~l~v~~~~~~~------------------~~~~~l~~~d~~~g~~~~~~~l~~~~~-~~~~~-ndiavd-- 158 (332)
.+++|++++.+|+....... .-.+.|+.+|+++|+..+.++...... ....+ .-+.++
T Consensus 250 ~~a~d~~~g~vyv~~gn~~~~~~~~r~~~gg~~~~~d~~~~~~v~AlD~~TG~~~W~~q~~~~d~wd~~~~~~p~l~~~~ 329 (582)
T 1flg_A 250 SASFDAETNTIIVGAGNPGPWNTWARTAKGGNPHDYDSLYTSGQVGVDPSSGEVKWFYQHTPNDAWDFSGNNELVLFDYK 329 (582)
T ss_dssp CCEEETTTTEEEEEECCBSSSCGGGGSCTTSCSTTCCCTTCSEEEEECTTTCCEEEEEESSTTCCSCCCCCCCCEEEEEE
T ss_pred CceEcCCCCEEEEeCCCCCcccCcccccCCCcccccCCcccceEEEEeCCCCCEEEEEeCCCCCcccccCCCCcEEEeee
Confidence 47889888999998752100 001579999999999998887632110 00111 123333
Q ss_pred -CCCc---EEEEeCCCCeEEEEcCC-CceEEEecCC--------------------CCCCc-------c-----cccCcc
Q 020019 159 -AEGN---AYVTDVTGSKIWKVGVK-GEFLSIISSP--------------------LFTPK-------E-----WYKNLV 201 (332)
Q Consensus 159 -~dG~---lyvtd~~~~~I~~v~~~-g~~~~~~~~~--------------------~~~~p-------~-----~~~~~~ 201 (332)
.+|+ +++.-..+|.+|.+|.+ |+.+...... .+..+ . ..|...
T Consensus 330 ~~~G~~~~~v~~~~~~G~l~~lD~~tG~~lw~~~~~~~~~~~~~~~~~~g~p~~~~~~~~~~~~~~~~~~~~~~~~P~~~ 409 (582)
T 1flg_A 330 AKDGKIVKATAHADRNGFFYVVDRSNGKLQNAFPFVDNITWASHIDLKTGRPVEREGQRPPLPEPGQKHGKAVEVSPPFL 409 (582)
T ss_dssp CSSSCEEEEEEEECTTSEEEEEETTTCCEEEEEESSSCCCSEEEECTTTCCEEECTTCSCCCCCTTCSSCCCEEESSCTT
T ss_pred cCCCCEEEEEEEECCCceEEEEECCCCCEecccccccCccccccccccCCCEeEccccCCccccccccCCCceEECcCCc
Confidence 3563 55555667788888864 6543221110 01000 0 001111
Q ss_pred ---ccCeEEEccCc-eEEEEeC--------------------------------CCCeEEEEeCCCCCCccceeEEEEec
Q 020019 202 ---GLNGIVYHPDG-FLIVIHT--------------------------------FSGNLFKIDIVDGVGEGEEIKLIRVA 245 (332)
Q Consensus 202 ---~~nGi~~~~dG-~Lyva~~--------------------------------~~~~i~~id~~~~~~~~~~~~~v~~~ 245 (332)
.-.+++++|+. .+|+... ..+.|+.+|+.+++ .+=.++..
T Consensus 410 Gg~~w~~~a~dp~~g~~yv~~~~~~~~~~~~~~~~~~g~~~~g~~~~~~p~~~~~~G~l~A~D~~tG~----~~W~~~~~ 485 (582)
T 1flg_A 410 GGKNWNPMAYSQDTGLFYVPANHWKEDYWTEEVSYTKGSAYLGMGFRIKRMYDDHVGSLRAMDPVSGK----VVWEHKEH 485 (582)
T ss_dssp CSSCSSCCEECTTTCCEEEEEECEEEEEEECCCCCCTTSCCCCEEEEEEESCSSCSEEEEEECTTTCC----EEEEEEES
T ss_pred cccCCCCceECCCCCEEEEechhcceeeecccccccCCCceeccceeecCCCCCCcceEEEEECCCCC----EEEEecCC
Confidence 12467899886 8887542 24678899998873 23223332
Q ss_pred CCCCCCCCeEEEeCCCeEEEEeCC-ceEEEEcCCCceEEEEEeeecCCCcccceEEEE-ECCeEEEEEecC
Q 020019 246 GGPLSFGDGLELLSPTKLVVAGNP-SARLVESSDGWETAAVVAKFSGPVHRLATAATV-KDGRVYLNHMLG 314 (332)
Q Consensus 246 g~~~~~pdGi~~~~dG~l~va~~~-~~~~v~~~dg~~~~~~~~~~~~~~~~~pt~va~-~~g~lyv~~~~g 314 (332)
. ..-.|.....+|.+|+.... ..+.+...+| +++-....+.....+-+++ .+|++||....|
T Consensus 486 -~--~~~~g~~~tagglvf~g~~dg~l~A~D~~tG----~~lW~~~~~~g~~a~P~~y~~~G~qYv~~~~G 549 (582)
T 1flg_A 486 -L--PLWAGVLATAGNLVFTGTGDGYFKAFDAKSG----KELWKFQTGSGIVSPPITWEQDGEQYLGVTVG 549 (582)
T ss_dssp -S--CCCSCCEEETTTEEEEECTTSEEEEEETTTC----CEEEEEECSSCCCSCCEEEEETTEEEEEEEEC
T ss_pred -C--CCcccceEeCCCEEEEECCCCcEEEEECCCC----CEEEEecCCCCcccCceEEEECCEEEEEEEcc
Confidence 1 11123344567888887643 3444566677 2332222222111122555 899999966655
|
| >1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1 | Back alignment and structure |
|---|
Probab=97.81 E-value=0.0085 Score=59.87 Aligned_cols=201 Identities=13% Similarity=0.132 Sum_probs=101.8
Q ss_pred eEEEeCCCCeEEEEEeCcCC------------C-ccceEEEEECCCCcEEEEEecCCCCC-C--C---CCccceEECCCC
Q 020019 101 GLVLDHPRNRLLVVAADVFG------------N-KYSAVAAYDLSTWNRLFLTQLSGPSD-G--K---SCADDVTVDAEG 161 (332)
Q Consensus 101 gi~vd~~~g~l~v~~~~~~~------------~-~~~~l~~~d~~~g~~~~~~~l~~~~~-~--~---~~~ndiavd~dG 161 (332)
.+++|++.+.+|+...+... + -.+.|+.+|+++|+..+..+...... . . ....++.+|.+.
T Consensus 234 ~~a~d~~~~~vy~~~~~g~~w~~~~~~~~~gd~l~~~~v~AlD~~tG~~~W~~~~~~~~~wd~~~~~~~~~~d~~~~G~~ 313 (668)
T 1kv9_A 234 SMAYDPELDLLYVGTGNGSPWNREVRSPGGGDNLYLSSILAIRPDTGKLAWHYQVTPGDSWDFTATQQITLAELNIDGKP 313 (668)
T ss_dssp CEEEETTTTEEEEECCCEESSCHHHHSTTCCCCTTTTEEEEECTTTCCEEEEEESSTTCCSCCCCCSCEEEEEEEETTEE
T ss_pred ceEEcCCCCEEEEeCCCCCccccCCCCCCCCCceeeeeEEEEcCCCCceeeEeecCCCccccccCCCCcEEEEeccCCcE
Confidence 47899877899988643210 0 01258999999999998887631100 0 0 111223332211
Q ss_pred -cEEEEeCCCCeEEEEcCC-CceEEEecC----------CCCCCccc-------------cc---CccccCeEEEccCc-
Q 020019 162 -NAYVTDVTGSKIWKVGVK-GEFLSIISS----------PLFTPKEW-------------YK---NLVGLNGIVYHPDG- 212 (332)
Q Consensus 162 -~lyvtd~~~~~I~~v~~~-g~~~~~~~~----------~~~~~p~~-------------~~---~~~~~nGi~~~~dG- 212 (332)
.+++.-..+|.+|.+|.. |+.+..... .....|.. .+ +...-.+++++|+.
T Consensus 314 ~~~v~~~~~~G~l~~lD~~tG~~l~~~~~~~~~w~~~~d~~~g~p~~~~~~~~~~~~~~~~p~~~G~~~w~~~a~dp~~g 393 (668)
T 1kv9_A 314 RKVLMQAPKNGFFYVLDRTNGKLISAEKFGKVTWAEKVDLATGRPVEAPGVRYEKEPIVMWPSPFGAHNWHSMSFNPGTG 393 (668)
T ss_dssp EEEEEECCTTSEEEEEETTTCCEEEEEESSCCCSEEEECTTTCCEEECTTTTCSSSCEEESSCTTCSSCSSCCEEETTTT
T ss_pred EEEEEEECCCCEEEEEECCCCCEeccccccccccccccccccCCccccccccccCCeeEECCCCccccCCCcceECCCCC
Confidence 133334456677777654 554311100 00000000 00 11123458999986
Q ss_pred eEEEEeC-----------------------------------CCCeEEEEeCCCCCCccceeEEEEecCCCCCCCCeEEE
Q 020019 213 FLIVIHT-----------------------------------FSGNLFKIDIVDGVGEGEEIKLIRVAGGPLSFGDGLEL 257 (332)
Q Consensus 213 ~Lyva~~-----------------------------------~~~~i~~id~~~~~~~~~~~~~v~~~g~~~~~pdGi~~ 257 (332)
.+|+... ..+.|+.+|+.+++ .+-.++.. . ..-.+...
T Consensus 394 ~~yv~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~p~~~~~g~l~A~D~~tG~----~~W~~~~~-~--~~~~~~~~ 466 (668)
T 1kv9_A 394 LVYIPYQEVPGVYRNEGKDFVTRKAFNTAAGFADATDVPAAVVSGALLAWDPVKQK----AAWKVPYP-T--HWNGGTLS 466 (668)
T ss_dssp EEEEEEEECCEEECCCGGGCCCCSSCCCSSCGGGCCCCCGGGCEEEEEEEETTTTE----EEEEEEES-S--SCCCCEEE
T ss_pred EEEEeccccceEeeeeccccccccccccCccccccCCCCCCCccceEEEEeCCCCc----EEEEccCC-C--CCcCceeE
Confidence 8887421 12678899998872 23223332 1 11123444
Q ss_pred eCCCeEEEEeCCc-eEEEEcCCCceEEEEEeeecCCC--cccceEEEE-ECCeEEEEEecC
Q 020019 258 LSPTKLVVAGNPS-ARLVESSDGWETAAVVAKFSGPV--HRLATAATV-KDGRVYLNHMLG 314 (332)
Q Consensus 258 ~~dG~l~va~~~~-~~~v~~~dg~~~~~~~~~~~~~~--~~~pt~va~-~~g~lyv~~~~g 314 (332)
..+|.+|+.+... .+.+...+| +++..+..+. ...| ++. .+|++||+..-|
T Consensus 467 t~gg~vf~g~~dg~l~a~d~~tG----~~l~~~~~~~~~~~~p--~~~~~~G~~yva~~~G 521 (668)
T 1kv9_A 467 TAGNLVFQGTAAGQMHAYSADKG----EALWQFEAQSGIVAAP--MTFELAGRQYVAIMAG 521 (668)
T ss_dssp ETTTEEEEECTTSEEEEEETTTC----CEEEEEECSSCCCSCC--EEEEETTEEEEEEEEC
T ss_pred eCCCEEEEECCcccchhhhhhcC----hhheEecCCCCcccCc--eEEEECCEEEEEEEec
Confidence 5678888886443 444556667 2332222121 2234 444 789999855444
|
| >2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A* | Back alignment and structure |
|---|
Probab=97.78 E-value=0.0093 Score=59.66 Aligned_cols=192 Identities=12% Similarity=0.112 Sum_probs=108.5
Q ss_pred ccceEEcCCCCEEEEE-ecCC----eEEEEECCCCCCCccceeeeEEecccCcCCCccceEEEeCCCCeEEEEEeCcCC-
Q 020019 47 RECAKWDDSGRRFIVS-FLDG----GIGQVAVPDDYPPGTVLEEVTLVKDLELTGNGSLGLVLDHPRNRLLVVAADVFG- 120 (332)
Q Consensus 47 pegia~d~~g~~~~~~-~~~g----~I~~vd~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~vd~~~g~l~v~~~~~~~- 120 (332)
..+++++|||+.+... ...| .|+.++..+++. .. .... . ....+++..+|...|+++..+...
T Consensus 127 ~~~~~~SPDg~~la~~~~~~G~~~~~i~v~d~~tg~~----~~--~~~~--~---~~~~~~~wspDg~~l~~~~~~~~~~ 195 (710)
T 2xdw_A 127 LRGYAFSEDGEYFAYGLSASGSDWVTIKFMKVDGAKE----LP--DVLE--R---VKFSCMAWTHDGKGMFYNAYPQQDG 195 (710)
T ss_dssp EEEEEECTTSSEEEEEEEETTCSCEEEEEEETTTTEE----EE--EEEE--E---ECSCCEEECTTSSEEEEEECCCCSS
T ss_pred EEEEEECCCCCEEEEEEcCCCCceEEEEEEECCCCCC----Cc--cccc--C---cccceEEEEeCCCEEEEEEECCccc
Confidence 3468999999966544 3333 799999987752 11 1111 1 124578999874456666543210
Q ss_pred ---------CccceEEEEECCCCcE--EEEEecCCCCCCCCCccceEECCCCc-EEEEeC-C---CCeEEEEcCCC----
Q 020019 121 ---------NKYSAVAAYDLSTWNR--LFLTQLSGPSDGKSCADDVTVDAEGN-AYVTDV-T---GSKIWKVGVKG---- 180 (332)
Q Consensus 121 ---------~~~~~l~~~d~~~g~~--~~~~~l~~~~~~~~~~ndiavd~dG~-lyvtd~-~---~~~I~~v~~~g---- 180 (332)
.....|+++++.+++. ...... +. ...+..++.+.|||+ |+++.. . ...|+.++.++
T Consensus 196 ~~~~~~~~~~~~~~v~~~~l~t~~~~~~~v~~~--~~-~~~~~~~~~~SpDg~~l~~~~~~~~~~~~~l~~~d~~~~~~~ 272 (710)
T 2xdw_A 196 KSDGTETSTNLHQKLYYHVLGTDQSEDILCAEF--PD-EPKWMGGAELSDDGRYVLLSIREGCDPVNRLWYCDLQQESNG 272 (710)
T ss_dssp CCSSSCCCCCCCCEEEEEETTSCGGGCEEEECC--TT-CTTCEEEEEECTTSCEEEEEEECSSSSCCEEEEEEGGGSSSS
T ss_pred cccccccccCCCCEEEEEECCCCcccceEEecc--CC-CCeEEEEEEEcCCCCEEEEEEEccCCCccEEEEEECcccccc
Confidence 1134588999987752 222222 11 123456789999996 554432 2 56899988753
Q ss_pred -----ceEEEecCCCCCCcccccCccccCeEEEccCc-eEEEEeCC---CCeEEEEeCCCCCCccceeEEEEecCCCCCC
Q 020019 181 -----EFLSIISSPLFTPKEWYKNLVGLNGIVYHPDG-FLIVIHTF---SGNLFKIDIVDGVGEGEEIKLIRVAGGPLSF 251 (332)
Q Consensus 181 -----~~~~~~~~~~~~~p~~~~~~~~~nGi~~~~dG-~Lyva~~~---~~~i~~id~~~~~~~~~~~~~v~~~g~~~~~ 251 (332)
+...+.... ...--.+++|| .||+.... ..+|++++++++.. ...+.+... .....
T Consensus 273 ~~~~~~~~~l~~~~------------~~~~~~~s~dg~~l~~~s~~~~~~~~l~~~d~~~~~~--~~~~~l~~~-~~~~~ 337 (710)
T 2xdw_A 273 ITGILKWVKLIDNF------------EGEYDYVTNEGTVFTFKTNRHSPNYRLINIDFTDPEE--SKWKVLVPE-HEKDV 337 (710)
T ss_dssp SCSSCCCEEEECSS------------SSCEEEEEEETTEEEEEECTTCTTCEEEEEETTSCCG--GGCEEEECC-CSSCE
T ss_pred cCCccceEEeeCCC------------CcEEEEEeccCCEEEEEECCCCCCCEEEEEeCCCCCc--ccceeccCC-CCCCe
Confidence 233322111 11122577888 88877553 45899999986521 012333222 11123
Q ss_pred CCeEEEeCCCeEEEEe
Q 020019 252 GDGLELLSPTKLVVAG 267 (332)
Q Consensus 252 pdGi~~~~dG~l~va~ 267 (332)
..++++.+++.|+++.
T Consensus 338 ~~~~~~~~~~~lv~~~ 353 (710)
T 2xdw_A 338 LEWVACVRSNFLVLCY 353 (710)
T ss_dssp EEEEEEETTTEEEEEE
T ss_pred EEEEEEEcCCEEEEEE
Confidence 4577777678888774
|
| >3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A | Back alignment and structure |
|---|
Probab=97.72 E-value=0.00069 Score=66.06 Aligned_cols=182 Identities=15% Similarity=0.077 Sum_probs=100.5
Q ss_pred ceEEcCCCC-EEEEEecCCeEEEEECCCCCCCccceeeeEEecccCcCCCccceEEEeCCCCeEEEE-EeCcCCCccceE
Q 020019 49 CAKWDDSGR-RFIVSFLDGGIGQVAVPDDYPPGTVLEEVTLVKDLELTGNGSLGLVLDHPRNRLLVV-AADVFGNKYSAV 126 (332)
Q Consensus 49 gia~d~~g~-~~~~~~~~g~I~~vd~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~vd~~~g~l~v~-~~~~~~~~~~~l 126 (332)
..+++++|+ +++++...+.+..++.++++. . .+...+ . ..++++|+ |+.++. ..+.. ....|
T Consensus 114 ~~~~s~dg~~~~~~s~~~~~~~l~d~~~g~~-----~--~l~~~~-----~-~~~~~spD-G~~la~~~~~~~--~~~~i 177 (582)
T 3o4h_A 114 ILSGVDTGEAVVFTGATEDRVALYALDGGGL-----R--ELARLP-----G-FGFVSDIR-GDLIAGLGFFGG--GRVSL 177 (582)
T ss_dssp EEEEEECSSCEEEEEECSSCEEEEEEETTEE-----E--EEEEES-----S-CEEEEEEE-TTEEEEEEEEET--TEEEE
T ss_pred eeeeCCCCCeEEEEecCCCCceEEEccCCcE-----E--EeecCC-----C-ceEEECCC-CCEEEEEEEcCC--CCeEE
Confidence 356777775 455554445555667666642 1 233222 1 67889997 765553 32211 12458
Q ss_pred EEEECCCCcEEEEEecCCCCCCCCCccceEECCCCcEEEEeCCCC--eEEEEcCCCceEEEecCCCCCCcccccCccccC
Q 020019 127 AAYDLSTWNRLFLTQLSGPSDGKSCADDVTVDAEGNAYVTDVTGS--KIWKVGVKGEFLSIISSPLFTPKEWYKNLVGLN 204 (332)
Q Consensus 127 ~~~d~~~g~~~~~~~l~~~~~~~~~~ndiavd~dG~lyvtd~~~~--~I~~v~~~g~~~~~~~~~~~~~p~~~~~~~~~n 204 (332)
+.+|+++++...... .....+.+++.|||+.+++....+ .|+++|.++........... .........+.
T Consensus 178 ~~~d~~~g~~~~l~~------~~~~~~~~~~SpDG~~l~~~~~~~~~~i~~~d~~~~~~~~~~~~~~--~~~~~~~~~~~ 249 (582)
T 3o4h_A 178 FTSNLSSGGLRVFDS------GEGSFSSASISPGMKVTAGLETAREARLVTVDPRDGSVEDLELPSK--DFSSYRPTAIT 249 (582)
T ss_dssp EEEETTTCCCEEECC------SSCEEEEEEECTTSCEEEEEECSSCEEEEEECTTTCCEEECCCSCS--HHHHHCCSEEE
T ss_pred EEEcCCCCCceEeec------CCCccccceECCCCCEEEEccCCCeeEEEEEcCCCCcEEEccCCCc--Chhhhhhcccc
Confidence 999999888653211 123457899999997444444445 89999988543333221111 00000001122
Q ss_pred eEEEccCceEEEEeCCCCeEEEEeCCCCCCccceeEEEEecCCCCCCCCeEEEeCCCeEEEEe
Q 020019 205 GIVYHPDGFLIVIHTFSGNLFKIDIVDGVGEGEEIKLIRVAGGPLSFGDGLELLSPTKLVVAG 267 (332)
Q Consensus 205 Gi~~~~dG~Lyva~~~~~~i~~id~~~~~~~~~~~~~v~~~g~~~~~pdGi~~~~dG~l~va~ 267 (332)
..+|+|||.+|++....+++..++. ++ ... .. ......++++ +|+++++.
T Consensus 250 ~~~~spdg~~~~~~~~~g~~~l~~~--g~----~~~---~~---~~~v~~~~~s-dg~~l~~~ 299 (582)
T 3o4h_A 250 WLGYLPDGRLAVVARREGRSAVFID--GE----RVE---AP---QGNHGRVVLW-RGKLVTSH 299 (582)
T ss_dssp EEEECTTSCEEEEEEETTEEEEEET--TE----EEC---CC---SSEEEEEEEE-TTEEEEEE
T ss_pred ceeEcCCCcEEEEEEcCCcEEEEEE--CC----eec---cC---CCceEEEEec-CCEEEEEE
Confidence 3349999977777766676665665 41 221 11 1234577888 88877763
|
| >4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A | Back alignment and structure |
|---|
Probab=97.71 E-value=0.031 Score=51.80 Aligned_cols=224 Identities=11% Similarity=0.076 Sum_probs=123.7
Q ss_pred ccccceEEcCCCCEEEEEecCCeEEEEECCCCCCCccceeeeEEecccCcCCCccceEEEeCCCCeEEEEEeCcCCCccc
Q 020019 45 FFRECAKWDDSGRRFIVSFLDGGIGQVAVPDDYPPGTVLEEVTLVKDLELTGNGSLGLVLDHPRNRLLVVAADVFGNKYS 124 (332)
Q Consensus 45 ~~pegia~d~~g~~~~~~~~~g~I~~vd~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~vd~~~g~l~v~~~~~~~~~~~ 124 (332)
....+++|+++|+.+++...++.|..++..+++. .. .+.... .....+..++ .+.++.. ...
T Consensus 148 ~~V~sv~fspdg~~lasgs~Dg~v~iWd~~~~~~----~~--~~~~h~----~~v~~~s~~~---~~l~sgs-----~d~ 209 (420)
T 4gga_A 148 EYISSVAWIKEGNYLAVGTSSAEVQLWDVQQQKR----LR--NMTSHS----ARVGSLSWNS---YILSSGS-----RSG 209 (420)
T ss_dssp CCEEEEEECTTSSEEEEEETTSCEEEEETTTTEE----EE--EECCCS----SCEEEEEEET---TEEEEEE-----TTS
T ss_pred CcEEEEEECCCCCEEEEEECCCeEEEEEcCCCcE----EE--EEeCCC----CceEEEeeCC---CEEEEEe-----CCC
Confidence 3456799999999888888889999999876652 11 221111 1344555553 3344332 235
Q ss_pred eEEEEECCCCcEEEEEecCCCCCCCCCccceEECCCCcEEEEeCCCCeEEEEcCC-CceEEEecCCCCCCcccccCcccc
Q 020019 125 AVAAYDLSTWNRLFLTQLSGPSDGKSCADDVTVDAEGNAYVTDVTGSKIWKVGVK-GEFLSIISSPLFTPKEWYKNLVGL 203 (332)
Q Consensus 125 ~l~~~d~~~g~~~~~~~l~~~~~~~~~~ndiavd~dG~lyvtd~~~~~I~~v~~~-g~~~~~~~~~~~~~p~~~~~~~~~ 203 (332)
.+..||........ ..+.+ .......+.+.++|+.+++-...+.|..++.. ++..... .... .......
T Consensus 210 ~i~~~d~~~~~~~~-~~~~~---h~~~~~~~~~~~~g~~l~s~~~D~~v~i~~~~~~~~~~~~-~~~~-----~~~~~~V 279 (420)
T 4gga_A 210 HIHHHDVRVAEHHV-ATLSG---HSQEVCGLRWAPDGRHLASGGNDNLVNVWPSAPGEGGWVP-LQTF-----TQHQGAV 279 (420)
T ss_dssp EEEEEETTSSSCEE-EEEEC---CSSCEEEEEECTTSSEEEEEETTSCEEEEESSCCSSCSCC-SEEE-----CCCSSCE
T ss_pred ceeEeeecccceee-EEecc---cccceeeeeecCCCCeeeeeeccccceEEeecccccccee-eeee-----cccCCce
Confidence 67888887644322 22211 12456678899999888887777877777654 2211000 0000 0012235
Q ss_pred CeEEEccCc-eEEEEe--CCCCeEEEEeCCCCCCccceeEEEEecCCCCCCCCeEEEeCCCeEEEE-e---CCceEEEEc
Q 020019 204 NGIVYHPDG-FLIVIH--TFSGNLFKIDIVDGVGEGEEIKLIRVAGGPLSFGDGLELLSPTKLVVA-G---NPSARLVES 276 (332)
Q Consensus 204 nGi~~~~dG-~Lyva~--~~~~~i~~id~~~~~~~~~~~~~v~~~g~~~~~pdGi~~~~dG~l~va-~---~~~~~~v~~ 276 (332)
..++++|++ .++++- ...+.|..+++.+++ ....+... .....+.+.++++.+++ . .+.+.+...
T Consensus 280 ~~~~~~p~~~~~la~~~gs~D~~I~iwd~~t~~----~~~~~~~~----~~v~~~~~~~~~~~lv~~sg~~d~~I~iwd~ 351 (420)
T 4gga_A 280 KAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGA----CLSAVDAH----SQVCSILWSPHYKELISGHGFAQNQLVIWKY 351 (420)
T ss_dssp EEEEECTTCTTEEEEEECTTTCEEEEEETTTTE----EEEEEECS----SCEEEEEEETTTTEEEEEECTTTCCEEEEET
T ss_pred eeeeeCCCcccEEEEEeecCCCEEEEEeCCccc----cceeeccc----cceeeeeecCCCCeEEEEEecCCCEEEEEEC
Confidence 688999987 665543 345788888988772 34434332 33456777777654444 3 223444455
Q ss_pred CCCceEEEEEeeecCCCcccceEEEE-ECCeEEE
Q 020019 277 SDGWETAAVVAKFSGPVHRLATAATV-KDGRVYL 309 (332)
Q Consensus 277 ~dg~~~~~~~~~~~~~~~~~pt~va~-~~g~lyv 309 (332)
+++... ..+.+ .-...+++++ .++++.+
T Consensus 352 ~~~~~v----~~l~g-H~~~V~~l~~spdg~~l~ 380 (420)
T 4gga_A 352 PTMAKV----AELKG-HTSRVLSLTMSPDGATVA 380 (420)
T ss_dssp TTCCEE----EEECC-CSSCEEEEEECTTSSCEE
T ss_pred CCCcEE----EEEcC-CCCCEEEEEEcCCCCEEE
Confidence 666332 22221 0122356677 4554444
|
| >3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B* | Back alignment and structure |
|---|
Probab=97.71 E-value=0.033 Score=52.00 Aligned_cols=229 Identities=11% Similarity=0.068 Sum_probs=128.0
Q ss_pred cccceEEc--CCCCEEEEEecCCeEEEEECCCCCCCccceee---eEEecccC--------cCC--CccceEEEeCCCCe
Q 020019 46 FRECAKWD--DSGRRFIVSFLDGGIGQVAVPDDYPPGTVLEE---VTLVKDLE--------LTG--NGSLGLVLDHPRNR 110 (332)
Q Consensus 46 ~pegia~d--~~g~~~~~~~~~g~I~~vd~~~~~~~~~~~~~---~~~~~~~~--------~~~--~~~~gi~vd~~~g~ 110 (332)
....+++. ++++.+++...++.|..++..++......... ......+. ..+ .....+ .++...
T Consensus 205 ~v~~l~~~~~~~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~--~~~~~~ 282 (464)
T 3v7d_B 205 TVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHMASVRTV--SGHGNI 282 (464)
T ss_dssp CEEEEEEEESSSCEEEEEEETTSCEEEEECCCCCCC------CCSSEEESCGGGCTTEEEEECCCSSCEEEE--EEETTE
T ss_pred ccEEEEEecCCCCCEEEEEcCCCcEEEeeCCCCcccccccccCCcceEeeccCCCeEEEEEccCccceEEEE--cCCCCE
Confidence 34456666 56677777777899999987765421000000 00000000 000 122333 443244
Q ss_pred EEEEEeCcCCCccceEEEEECCCCcEEEEEecCCCCCCCCCccceEECCCCcEEEEeCCCCeEEEEcCC-CceEEEecCC
Q 020019 111 LLVVAADVFGNKYSAVAAYDLSTWNRLFLTQLSGPSDGKSCADDVTVDAEGNAYVTDVTGSKIWKVGVK-GEFLSIISSP 189 (332)
Q Consensus 111 l~v~~~~~~~~~~~~l~~~d~~~g~~~~~~~l~~~~~~~~~~ndiavd~dG~lyvtd~~~~~I~~v~~~-g~~~~~~~~~ 189 (332)
++++.. .+.+..||.++++......- .......++++++|+.+++-+..+.|..++.. ++....+...
T Consensus 283 l~~~~~------d~~i~vwd~~~~~~~~~~~~-----~~~~v~~~~~~~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~h 351 (464)
T 3v7d_B 283 VVSGSY------DNTLIVWDVAQMKCLYILSG-----HTDRIYSTIYDHERKRCISASMDTTIRIWDLENGELMYTLQGH 351 (464)
T ss_dssp EEEEET------TSCEEEEETTTTEEEEEECC-----CSSCEEEEEEETTTTEEEEEETTSCEEEEETTTTEEEEEECCC
T ss_pred EEEEeC------CCeEEEEECCCCcEEEEecC-----CCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEEeCC
Confidence 444443 35689999998876644321 13457789999999988888888999999975 5544333211
Q ss_pred CCCCcccccCccccCeEEEccCceEEEEeCCCCeEEEEeCCCCCCccceeEEEEecCCCCCCCCeEEEeCCCeEEEEeCC
Q 020019 190 LFTPKEWYKNLVGLNGIVYHPDGFLIVIHTFSGNLFKIDIVDGVGEGEEIKLIRVAGGPLSFGDGLELLSPTKLVVAGNP 269 (332)
Q Consensus 190 ~~~~p~~~~~~~~~nGi~~~~dG~Lyva~~~~~~i~~id~~~~~~~~~~~~~v~~~g~~~~~pdGi~~~~dG~l~va~~~ 269 (332)
......++++ +...++-...+.|..+++.++. ........ .....+++.++|+++++...
T Consensus 352 ----------~~~v~~~~~~--~~~l~s~s~dg~v~vwd~~~~~----~~~~~~~~----~~~~~~~~~~~~~~l~~~~d 411 (464)
T 3v7d_B 352 ----------TALVGLLRLS--DKFLVSAAADGSIRGWDANDYS----RKFSYHHT----NLSAITTFYVSDNILVSGSE 411 (464)
T ss_dssp ----------SSCEEEEEEC--SSEEEEEETTSEEEEEETTTCC----EEEEEECT----TCCCEEEEEECSSEEEEEET
T ss_pred ----------CCcEEEEEEc--CCEEEEEeCCCcEEEEECCCCc----eeeeecCC----CCccEEEEEeCCCEEEEecC
Confidence 1234577776 4344444567789889988652 22222211 33456788888888877643
Q ss_pred -ceEEEEcCCCceEEEEEeeecCCCcccceEEEEECCeEEEEE
Q 020019 270 -SARLVESSDGWETAAVVAKFSGPVHRLATAATVKDGRVYLNH 311 (332)
Q Consensus 270 -~~~~v~~~dg~~~~~~~~~~~~~~~~~pt~va~~~g~lyv~~ 311 (332)
...+....+| ++......+.......+++.++.++++.
T Consensus 412 g~i~iwd~~~g----~~~~~~~~~~~~~v~~v~~~~~~l~~~~ 450 (464)
T 3v7d_B 412 NQFNIYNLRSG----KLVHANILKDADQIWSVNFKGKTLVAAV 450 (464)
T ss_dssp TEEEEEETTTC----CEEESCTTTTCSEEEEEEEETTEEEEEE
T ss_pred CeEEEEECCCC----cEEehhhccCCCcEEEEEecCCEEEEEE
Confidence 3444455666 3333211122233466777777777643
|
| >4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B* | Back alignment and structure |
|---|
Probab=97.69 E-value=0.0013 Score=61.69 Aligned_cols=147 Identities=10% Similarity=0.113 Sum_probs=94.5
Q ss_pred ccceEEEeCCCCeEEEEEeCcCCCccceEEEEECCCCcEEEEEecCCCCCCCCCccceEECC-CCcEEEEeCCCCeEEEE
Q 020019 98 GSLGLVLDHPRNRLLVVAADVFGNKYSAVAAYDLSTWNRLFLTQLSGPSDGKSCADDVTVDA-EGNAYVTDVTGSKIWKV 176 (332)
Q Consensus 98 ~~~gi~vd~~~g~l~v~~~~~~~~~~~~l~~~d~~~g~~~~~~~l~~~~~~~~~~ndiavd~-dG~lyvtd~~~~~I~~v 176 (332)
.+..|+++|.++++.++.. ..+.|.+||.++++......+.++ ....+++++.| +++++++-+..+.|...
T Consensus 121 ~V~~l~~~P~~~~~lasGs-----~dg~i~lWd~~~~~~~~~~~~~gH---~~~V~~l~f~p~~~~~l~s~s~D~~v~iw 192 (435)
T 4e54_B 121 RATSLAWHPTHPSTVAVGS-----KGGDIMLWNFGIKDKPTFIKGIGA---GGSITGLKFNPLNTNQFYASSMEGTTRLQ 192 (435)
T ss_dssp CEEEEEECSSCTTCEEEEE-----TTSCEEEECSSCCSCCEEECCCSS---SCCCCEEEECSSCTTEEEEECSSSCEEEE
T ss_pred CEEEEEEeCCCCCEEEEEe-----CCCEEEEEECCCCCceeEEEccCC---CCCEEEEEEeCCCCCEEEEEeCCCEEEEe
Confidence 4678999986565554432 245689999988765554554321 24578899998 57888998888999888
Q ss_pred cCCCceEEEecCCCCCCcccccCccccCeEEEccCceEEEEeCCCCeEEEEeCCCCCCccceeEEEEecCCCCCCCCeEE
Q 020019 177 GVKGEFLSIISSPLFTPKEWYKNLVGLNGIVYHPDGFLIVIHTFSGNLFKIDIVDGVGEGEEIKLIRVAGGPLSFGDGLE 256 (332)
Q Consensus 177 ~~~g~~~~~~~~~~~~~p~~~~~~~~~nGi~~~~dG~Lyva~~~~~~i~~id~~~~~~~~~~~~~v~~~g~~~~~pdGi~ 256 (332)
|..++.......... .......++++++|.++++-...+.|..+++++. .+..+.. .......++
T Consensus 193 d~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~l~~g~~dg~i~~wd~~~~-----~~~~~~~---h~~~v~~v~ 257 (435)
T 4e54_B 193 DFKGNILRVFASSDT-------INIWFCSLDVSASSRMVVTGDNVGNVILLNMDGK-----ELWNLRM---HKKKVTHVA 257 (435)
T ss_dssp ETTSCEEEEEECCSS-------CSCCCCCEEEETTTTEEEEECSSSBEEEEESSSC-----BCCCSBC---CSSCEEEEE
T ss_pred eccCCceeEEeccCC-------CCccEEEEEECCCCCEEEEEeCCCcEeeeccCcc-----eeEEEec---ccceEEeee
Confidence 887664433322111 1123567999999966666667888988998754 2221211 223456788
Q ss_pred EeCCCe-EEEEe
Q 020019 257 LLSPTK-LVVAG 267 (332)
Q Consensus 257 ~~~dG~-l~va~ 267 (332)
+.+++. ++++.
T Consensus 258 ~~p~~~~~~~s~ 269 (435)
T 4e54_B 258 LNPCCDWFLATA 269 (435)
T ss_dssp ECTTCSSEEEEE
T ss_pred ecCCCceEEEEe
Confidence 888765 55443
|
| >2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=97.68 E-value=0.027 Score=50.42 Aligned_cols=202 Identities=6% Similarity=0.000 Sum_probs=107.8
Q ss_pred cccceEEcCCCCEEEEEecCCeEEEEECCCCCCCccceeeeEEecccCcCCCccceEEEeCCCCeEEEEEeCcCCCccce
Q 020019 46 FRECAKWDDSGRRFIVSFLDGGIGQVAVPDDYPPGTVLEEVTLVKDLELTGNGSLGLVLDHPRNRLLVVAADVFGNKYSA 125 (332)
Q Consensus 46 ~pegia~d~~g~~~~~~~~~g~I~~vd~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~vd~~~g~l~v~~~~~~~~~~~~ 125 (332)
....++++|+++++++...++.|..++...........+....+. + -......++++++ ++++++... .+.
T Consensus 60 ~v~~v~~sp~~~~las~s~D~~v~iw~~~~~~~~~~~~~~~~~~~--~-h~~~V~~v~~sp~-g~~las~s~-----D~~ 130 (330)
T 2hes_X 60 AIRSVAWRPHTSLLAAGSFDSTVSIWAKEESADRTFEMDLLAIIE--G-HENEVKGVAWSND-GYYLATCSR-----DKS 130 (330)
T ss_dssp CEEEEEECTTSSEEEEEETTSCEEEEEC-------CCCEEEEEEC-------CEEEEEECTT-SCEEEEEET-----TSC
T ss_pred CEEEEEECCCCCEEEEEeCCCcEEEEEcccCcCccccceeEEEEc--C-CCCcEEEEEECCC-CCEEEEEeC-----CCE
Confidence 345789999999888777789998888643210000001001111 1 0125688999997 665554432 356
Q ss_pred EEEEECCC-Cc-EEEEEecCCCCCCCCCccceEECCCCcEEEEeCCCCeEEEEcCC-C--ceEEEecCCCCCCcccccCc
Q 020019 126 VAAYDLST-WN-RLFLTQLSGPSDGKSCADDVTVDAEGNAYVTDVTGSKIWKVGVK-G--EFLSIISSPLFTPKEWYKNL 200 (332)
Q Consensus 126 l~~~d~~~-g~-~~~~~~l~~~~~~~~~~ndiavd~dG~lyvtd~~~~~I~~v~~~-g--~~~~~~~~~~~~~p~~~~~~ 200 (332)
+..||.+. ++ ......+.+ .....+.+++.|+|+++++-+..+.|...+.. + +....+.. ..
T Consensus 131 v~iwd~~~~~~~~~~~~~~~~---h~~~v~~v~~~p~~~~l~s~s~D~~i~iW~~~~~~~~~~~~~~~----------h~ 197 (330)
T 2hes_X 131 VWIWETDESGEEYECISVLQE---HSQDVKHVIWHPSEALLASSSYDDTVRIWKDYDDDWECVAVLNG----------HE 197 (330)
T ss_dssp EEEEECCTTCCCCEEEEEECC---CSSCEEEEEECSSSSEEEEEETTSCEEEEEEETTEEEEEEEECC----------CS
T ss_pred EEEEeccCCCCCeEEEEEecc---CCCceEEEEECCCCCEEEEEcCCCeEEEEECCCCCeeEEEEccC----------CC
Confidence 88999843 22 122223321 12457789999999988888877877666543 2 22222211 11
Q ss_pred cccCeEEEccC--ceEEEEeCCCCeEEEEeCCCCCCccc-e-eEEEEecCCCCCCCCeEEEeCCCeEEEEeCC
Q 020019 201 VGLNGIVYHPD--GFLIVIHTFSGNLFKIDIVDGVGEGE-E-IKLIRVAGGPLSFGDGLELLSPTKLVVAGNP 269 (332)
Q Consensus 201 ~~~nGi~~~~d--G~Lyva~~~~~~i~~id~~~~~~~~~-~-~~~v~~~g~~~~~pdGi~~~~dG~l~va~~~ 269 (332)
.....++|+++ +.+.++-...+.|..+++..+..... . .......+........+++.+++.|+.+...
T Consensus 198 ~~v~~~~~~~~~~~~~l~s~s~D~~v~iw~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s~~~~l~s~~~d 270 (330)
T 2hes_X 198 GTVWSSDFDKTEGVFRLCSGSDDSTVRVWKYMGDDEDDQQEWVCEAILPDVHKRQVYNVAWGFNGLIASVGAD 270 (330)
T ss_dssp SCEEEEEECCSSSSCEEEEEETTSCEEEEEEEEECTTSCEEEEEEEECCSCCSSCEEEEEECTTSCEEEEETT
T ss_pred CcEEEEEecCCCCeeEEEEEeCCCeEEEEEecCCCccccceeEEeeecccccccceEEEEEcCCCEEEEEeCC
Confidence 23468899998 54455555566665555542210000 1 1111122112234567888877766555533
|
| >3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=97.67 E-value=0.0019 Score=65.31 Aligned_cols=196 Identities=8% Similarity=-0.032 Sum_probs=114.1
Q ss_pred cccceEEcCC--CCEEEEEecCCeEEEEECCCCCCCccceeeeEEecccCcCCCccceEEEeCC--CCeEEEEEeCcCCC
Q 020019 46 FRECAKWDDS--GRRFIVSFLDGGIGQVAVPDDYPPGTVLEEVTLVKDLELTGNGSLGLVLDHP--RNRLLVVAADVFGN 121 (332)
Q Consensus 46 ~pegia~d~~--g~~~~~~~~~g~I~~vd~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~vd~~--~g~l~v~~~~~~~~ 121 (332)
...++++.++ ++.+++...+|.|..++..+++. ....... . .......++++++ ...++++..
T Consensus 55 ~V~~l~~s~~~~~~~l~s~s~Dg~I~vwd~~~~~~-----~~~~~~~--~-h~~~V~~v~~sp~~~~~~l~sgs~----- 121 (753)
T 3jro_A 55 PVWRVDWAHPKFGTILASCSYDGKVLIWKEENGRW-----SQIAVHA--V-HSASVNSVQWAPHEYGPLLLVASS----- 121 (753)
T ss_dssp CEEEEEECCTTSCSEEEEEETTSCEEEEEEETTEE-----EEEEEEC--C-CSSCEEEEEECCGGGCSEEEEEET-----
T ss_pred ceEEEEecCCCCCCEEEEEeCCCeEEEEECCCCcc-----ccccccc--C-CCCCeEEEEECCCCCCCEEEEEeC-----
Confidence 4457889887 88888877789999998776541 1001111 1 1125688999985 334444433
Q ss_pred ccceEEEEECCCCcEEEEEecCCCCCCCCCccceEECC-------------CCcEEEEeCCCCeEEEEcCC-C-ceEEEe
Q 020019 122 KYSAVAAYDLSTWNRLFLTQLSGPSDGKSCADDVTVDA-------------EGNAYVTDVTGSKIWKVGVK-G-EFLSII 186 (332)
Q Consensus 122 ~~~~l~~~d~~~g~~~~~~~l~~~~~~~~~~ndiavd~-------------dG~lyvtd~~~~~I~~v~~~-g-~~~~~~ 186 (332)
.+.+..||.+++.......+.+ .......+++.| +|+.+++.+..+.|..++.. + ......
T Consensus 122 -dg~I~vwdl~~~~~~~~~~~~~---~~~~v~~l~~~p~~~~~~~~~~~~~d~~~l~sgs~dg~I~iwd~~~~~~~~~~~ 197 (753)
T 3jro_A 122 -DGKVSVVEFKENGTTSPIIIDA---HAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLE 197 (753)
T ss_dssp -TSEEEEEECCSSSCCCCEEEEC---CSSCEEEEEECCCC---------CGGGCCEEEEETTSCEEEEEEETTTTEEEEE
T ss_pred -CCcEEEEEeecCCCcceeEeec---CCCceEEEEecCcccccccccccCCCCCEEEEEECCCeEEEEeccCCcccceee
Confidence 4578999998763322222211 124566788888 57777777777877777653 2 111111
Q ss_pred cCCCCCCcccccCccccCeEEEccC---ceEEEEeCCCCeEEEEeCCCCCCccceeEEEEecCCCCCCCCeEEEeCCCeE
Q 020019 187 SSPLFTPKEWYKNLVGLNGIVYHPD---GFLIVIHTFSGNLFKIDIVDGVGEGEEIKLIRVAGGPLSFGDGLELLSPTKL 263 (332)
Q Consensus 187 ~~~~~~~p~~~~~~~~~nGi~~~~d---G~Lyva~~~~~~i~~id~~~~~~~~~~~~~v~~~g~~~~~pdGi~~~~dG~l 263 (332)
. .+. ........++++|+ |.++++-...+.|..+++.++.. .....+............+++.++|++
T Consensus 198 ~--~~~-----~h~~~V~~l~~sp~~~~~~~l~s~s~Dg~I~iwd~~~~~~--~~~~~~~~~~~~~~~v~~l~~spdg~~ 268 (753)
T 3jro_A 198 S--TLE-----GHSDWVRDVAWSPTVLLRSYLASVSQDRTCIIWTQDNEQG--PWKKTLLKEEKFPDVLWRASWSLSGNV 268 (753)
T ss_dssp E--EEC-----CCSSCEEEEEECCCCSSSEEEEEEESSSCEEEEEESSSSS--CCBCCBSSSSCCSSCCCCEEECTTTCC
T ss_pred e--eec-----CCCCcEEEEEeccCCCCCCEEEEEecCCEEEEecCCCCCC--cceeEEeccCCCCCceEEEEEcCCCCE
Confidence 0 000 01234679999999 86666666678888888876421 011111111012245668899999887
Q ss_pred EEEe
Q 020019 264 VVAG 267 (332)
Q Consensus 264 ~va~ 267 (332)
+++.
T Consensus 269 l~s~ 272 (753)
T 3jro_A 269 LALS 272 (753)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 7664
|
| >2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=97.67 E-value=0.002 Score=62.95 Aligned_cols=200 Identities=11% Similarity=0.026 Sum_probs=115.8
Q ss_pred eeEEEecCC--ccccceEEcCCCCEEEEEecCCeEEEEECCCCCCCccceeeeEEecccCcCCCccceEEEeCCCCeEEE
Q 020019 36 HVYHYHSSS--FFRECAKWDDSGRRFIVSFLDGGIGQVAVPDDYPPGTVLEEVTLVKDLELTGNGSLGLVLDHPRNRLLV 113 (332)
Q Consensus 36 ~~i~~~~~~--~~pegia~d~~g~~~~~~~~~g~I~~vd~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~vd~~~g~l~v 113 (332)
+++.+.... ...++++|+|||+++.+...+++|. ++...+ .+..++ .....+++.|+ |
T Consensus 5 ~~~~~~~~~~~~~v~sv~~SpDG~~iASas~D~TV~--d~~~~~---------~l~gh~----~~v~~V~FsPd-g---- 64 (588)
T 2j04_A 5 KDLLVDRKEFEDWKNNLTWARDGTLYLTTFPDISIG--QPKYAK---------DINCNS----KNLFHVKEFPL-E---- 64 (588)
T ss_dssp BCEEECSCCCSSSSCCEEECTTSCEEEECSSSEEEE--EECCCS---------CCSSBG----GGTEEEEEECC-C----
T ss_pred HhhcccHhHhhccEEEEEECCCCCEEEEEcCCceee--cccccc---------eecCCC----ccEEEEEECCC-C----
Confidence 445554433 3778999999999887777677777 544333 121112 25788899996 6
Q ss_pred EEeCcCCCccceEEEEECCCCcEEEEEecCCCCCCCCCccceEECCCCcEEEEeCCCCeEEEEcCCCceEEEecCCCCCC
Q 020019 114 VAADVFGNKYSAVAAYDLSTWNRLFLTQLSGPSDGKSCADDVTVDAEGNAYVTDVTGSKIWKVGVKGEFLSIISSPLFTP 193 (332)
Q Consensus 114 ~~~~~~~~~~~~l~~~d~~~g~~~~~~~l~~~~~~~~~~ndiavd~dG~lyvtd~~~~~I~~v~~~g~~~~~~~~~~~~~ 193 (332)
.+ ..|+..+++......+. . ......+++.|||....+-+..+.|..++.++. ...+. .....
T Consensus 65 --~~---------~~~~~~~~~~~~~~~~~--~--~~~V~~vawSPdG~~LAs~s~dg~V~iwd~~~~-l~~l~-~~~~~ 127 (588)
T 2j04_A 65 --FE---------NKLDFELAQQNGLLNSQ--P--VCYPRVCKPSPIDDWMAVLSNNGNVSVFKDNKM-LTNLD-SKGNL 127 (588)
T ss_dssp --CC---------CTTTTSCCCSSCSSTTS--C--SCCEEEEEECSSSSCEEEEETTSCEEEEETTEE-EEECC-CSSCS
T ss_pred --Cc---------ceEEEEeCCCceEeecC--C--CCcEEEEEECCCCCEEEEEeCCCcEEEEeCCce-eeecc-CCCcc
Confidence 11 11233333211112221 1 356788999999998888888888888886552 22222 11100
Q ss_pred cccccCccccCeEEEccCc-eEEEEeCCCCeEEEEeCCCCCCccc---eeEEEEecC-CCCCCCCeEEEeCCCeEEEEeC
Q 020019 194 KEWYKNLVGLNGIVYHPDG-FLIVIHTFSGNLFKIDIVDGVGEGE---EIKLIRVAG-GPLSFGDGLELLSPTKLVVAGN 268 (332)
Q Consensus 194 p~~~~~~~~~nGi~~~~dG-~Lyva~~~~~~i~~id~~~~~~~~~---~~~~v~~~g-~~~~~pdGi~~~~dG~l~va~~ 268 (332)
.......++|+||| .|+++ ...++|.-+++.++..... .+..+.... .+......+++.||| +.++..
T Consensus 128 -----~~~sv~svafSPDG~~LAsg-s~DGtVkIWd~~~~~l~~~~~i~l~ti~~~~~gh~~~V~sVawSPdg-Laass~ 200 (588)
T 2j04_A 128 -----SSRTYHCFEWNPIESSIVVG-NEDGELQFFSIRKNSENTPEFYFESSIRLSDAGSKDWVTHIVWYEDV-LVAALS 200 (588)
T ss_dssp -----TTTCEEEEEECSSSSCEEEE-ETTSEEEEEECCCCTTTCCCCEEEEEEECSCTTCCCCEEEEEEETTE-EEEEET
T ss_pred -----ccccEEEEEEcCCCCEEEEE-cCCCEEEEEECCCCccccccceeeeeeecccccccccEEEEEEcCCc-EEEEeC
Confidence 01246799999999 66665 4577888888886632000 133333211 123457789999999 655554
Q ss_pred C-ceEEEEcCCC
Q 020019 269 P-SARLVESSDG 279 (332)
Q Consensus 269 ~-~~~~v~~~dg 279 (332)
. ..++.....+
T Consensus 201 D~tVrlWd~~~~ 212 (588)
T 2j04_A 201 NNSVFSMTVSAS 212 (588)
T ss_dssp TCCEEEECCCSS
T ss_pred CCeEEEEECCCC
Confidence 3 3444344333
|
| >1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A* | Back alignment and structure |
|---|
Probab=97.67 E-value=0.0015 Score=68.44 Aligned_cols=180 Identities=13% Similarity=0.035 Sum_probs=110.7
Q ss_pred cccceEEc-CCCCEEEEEecCCeEEEEECCCCCCCccceeeeEEecccCcCCCccceEEEeCCCCe-EEEEEeCcCCCcc
Q 020019 46 FRECAKWD-DSGRRFIVSFLDGGIGQVAVPDDYPPGTVLEEVTLVKDLELTGNGSLGLVLDHPRNR-LLVVAADVFGNKY 123 (332)
Q Consensus 46 ~pegia~d-~~g~~~~~~~~~g~I~~vd~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~vd~~~g~-l~v~~~~~~~~~~ 123 (332)
.+.+++++ |+|+.++... .+.|+.++..+++. . .+...++ ..+..+++. + |+ ++++.. .
T Consensus 297 ~v~~~~~S~pdG~~la~~~-~~~i~~~~~~~~~~-----~--~~~~~~~---~~~~~~~~s-d-g~~l~~~s~------~ 357 (1045)
T 1k32_A 297 SKFAEDFSPLDGDLIAFVS-RGQAFIQDVSGTYV-----L--KVPEPLR---IRYVRRGGD-T-KVAFIHGTR------E 357 (1045)
T ss_dssp GGGEEEEEECGGGCEEEEE-TTEEEEECTTSSBE-----E--ECSCCSC---EEEEEECSS-S-EEEEEEEET------T
T ss_pred ccceeeecCCCCCEEEEEE-cCEEEEEcCCCCce-----E--EccCCCc---ceEEeeeEc-C-CCeEEEEEC------C
Confidence 46789999 9998554443 68999998775541 1 2211111 134566777 5 54 444432 2
Q ss_pred ceEE-EEECCCCcEEEEEecCCCCCCCCCccceEECCCCcEEEEeCCCCeEEEEcCC-CceEEEecCCCCCCcccccCcc
Q 020019 124 SAVA-AYDLSTWNRLFLTQLSGPSDGKSCADDVTVDAEGNAYVTDVTGSKIWKVGVK-GEFLSIISSPLFTPKEWYKNLV 201 (332)
Q Consensus 124 ~~l~-~~d~~~g~~~~~~~l~~~~~~~~~~ndiavd~dG~lyvtd~~~~~I~~v~~~-g~~~~~~~~~~~~~p~~~~~~~ 201 (332)
..++ .||.++++... +.. .......+++.|||+.+++....+.|+.++.+ |+........ ..
T Consensus 358 ~~l~~~~d~~~~~~~~---l~~---~~~~~~~~~~SpDG~~la~~~~~~~v~~~d~~tg~~~~~~~~~----------~~ 421 (1045)
T 1k32_A 358 GDFLGIYDYRTGKAEK---FEE---NLGNVFAMGVDRNGKFAVVANDRFEIMTVDLETGKPTVIERSR----------EA 421 (1045)
T ss_dssp EEEEEEEETTTCCEEE---CCC---CCCSEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECS----------SS
T ss_pred CceEEEEECCCCCceE---ecC---CccceeeeEECCCCCEEEEECCCCeEEEEECCCCceEEeccCC----------CC
Confidence 4688 89998776542 321 13567789999999855555556799999986 4544443211 11
Q ss_pred ccCeEEEccCc-eEEEEeCCC---------CeEEEEeCCCCCCccceeEEEEecCCCCCCCCeEEEeCCCe-EEEEeC
Q 020019 202 GLNGIVYHPDG-FLIVIHTFS---------GNLFKIDIVDGVGEGEEIKLIRVAGGPLSFGDGLELLSPTK-LVVAGN 268 (332)
Q Consensus 202 ~~nGi~~~~dG-~Lyva~~~~---------~~i~~id~~~~~~~~~~~~~v~~~g~~~~~pdGi~~~~dG~-l~va~~ 268 (332)
....++|+||| .|.++.... +.|+.+++.++ ... .+. ........+++.+||+ ||++..
T Consensus 422 ~v~~~~~SpDG~~la~~~~~~~~~~~~~~~~~i~l~d~~~g-----~~~--~l~-~~~~~~~~~~~spdG~~l~~~s~ 491 (1045)
T 1k32_A 422 MITDFTISDNSRFIAYGFPLKHGETDGYVMQAIHVYDMEGR-----KIF--AAT-TENSHDYAPAFDADSKNLYYLSY 491 (1045)
T ss_dssp CCCCEEECTTSCEEEEEEEECSSTTCSCCEEEEEEEETTTT-----EEE--ECS-CSSSBEEEEEECTTSCEEEEEES
T ss_pred CccceEECCCCCeEEEEecCccccccCCCCCeEEEEECCCC-----cEE--Eee-CCCcccCCceEcCCCCEEEEEec
Confidence 24689999999 676654432 58999998876 332 222 1223445688999987 555543
|
| >3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=97.63 E-value=0.01 Score=55.09 Aligned_cols=162 Identities=7% Similarity=-0.003 Sum_probs=101.5
Q ss_pred EcCCCCEEEEEecCCeEEEEECCCCCCCccceeeeEEecccCcCCCccceEEEeCCCCeEEEEEeCcCCCccceEEEEEC
Q 020019 52 WDDSGRRFIVSFLDGGIGQVAVPDDYPPGTVLEEVTLVKDLELTGNGSLGLVLDHPRNRLLVVAADVFGNKYSAVAAYDL 131 (332)
Q Consensus 52 ~d~~g~~~~~~~~~g~I~~vd~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~vd~~~g~l~v~~~~~~~~~~~~l~~~d~ 131 (332)
+.++++.+++...++.|..+|..+++. .. .+...+.. ..+..++++++ +.++++... .+.|..||.
T Consensus 178 ~~~~~~~l~~~~~d~~i~iwd~~~~~~----~~--~~~~~~h~--~~v~~~~~s~~-~~~l~s~~~-----dg~i~iwd~ 243 (437)
T 3gre_A 178 VNEEKSLLVALTNLSRVIIFDIRTLER----LQ--IIENSPRH--GAVSSICIDEE-CCVLILGTT-----RGIIDIWDI 243 (437)
T ss_dssp ECSSCEEEEEEETTSEEEEEETTTCCE----EE--EEECCGGG--CCEEEEEECTT-SCEEEEEET-----TSCEEEEET
T ss_pred EcCCCCEEEEEeCCCeEEEEeCCCCee----eE--EEccCCCC--CceEEEEECCC-CCEEEEEcC-----CCeEEEEEc
Confidence 456788777777789999999876652 11 23211111 25789999997 664444332 356899999
Q ss_pred CCCcEEEEEecCCCCCCCCCccceEEC----CCCcEEEEeCCCCeEEEEcCC-CceEEEecCCCCC------Cccc----
Q 020019 132 STWNRLFLTQLSGPSDGKSCADDVTVD----AEGNAYVTDVTGSKIWKVGVK-GEFLSIISSPLFT------PKEW---- 196 (332)
Q Consensus 132 ~~g~~~~~~~l~~~~~~~~~~ndiavd----~dG~lyvtd~~~~~I~~v~~~-g~~~~~~~~~~~~------~p~~---- 196 (332)
++++....+.+. . ......+++. ++|.++++-+..+.|..+|.. ++....+...... .|..
T Consensus 244 ~~~~~~~~~~~~--~--~~~v~~~~~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 319 (437)
T 3gre_A 244 RFNVLIRSWSFG--D--HAPITHVEVCQFYGKNSVIVVGGSSKTFLTIWNFVKGHCQYAFINSDEQPSMEHFLPIEKGLE 319 (437)
T ss_dssp TTTEEEEEEBCT--T--CEEEEEEEECTTTCTTEEEEEEESTTEEEEEEETTTTEEEEEEESSSSCCCGGGGSCBCSSGG
T ss_pred CCccEEEEEecC--C--CCceEEEEeccccCCCccEEEEEcCCCcEEEEEcCCCcEEEEEEcCCCCCccceecccccccc
Confidence 988876655542 1 2345567444 567788888888889999876 5543332211100 0000
Q ss_pred ----c--cCccccCeEEEccCceEEEEeCCCCeEEEEeCCCC
Q 020019 197 ----Y--KNLVGLNGIVYHPDGFLIVIHTFSGNLFKIDIVDG 232 (332)
Q Consensus 197 ----~--~~~~~~nGi~~~~dG~Lyva~~~~~~i~~id~~~~ 232 (332)
. ........++++ ++.++++-...++|..+++.++
T Consensus 320 ~~~~~~~~~~~~v~~l~~~-~~~~l~s~~~d~~i~~wd~~~~ 360 (437)
T 3gre_A 320 ELNFCGIRSLNALSTISVS-NDKILLTDEATSSIVMFSLNEL 360 (437)
T ss_dssp GCCCCCCCSGGGGCCEEEE-TTEEEEEEGGGTEEEEEETTCG
T ss_pred cceecccccCCceEEEEEC-CceEEEecCCCCeEEEEECCCc
Confidence 0 012236789999 7766667777889999999876
|
| >4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ... | Back alignment and structure |
|---|
Probab=97.61 E-value=0.003 Score=63.60 Aligned_cols=153 Identities=11% Similarity=0.089 Sum_probs=87.1
Q ss_pred cceEEcCCCCEEEEEecCCeEEEEECCCCCCCccceeeeEEecccCcCCC--ccceEEEeCCCCe-EEEEEeCcC---CC
Q 020019 48 ECAKWDDSGRRFIVSFLDGGIGQVAVPDDYPPGTVLEEVTLVKDLELTGN--GSLGLVLDHPRNR-LLVVAADVF---GN 121 (332)
Q Consensus 48 egia~d~~g~~~~~~~~~g~I~~vd~~~~~~~~~~~~~~~~~~~~~~~~~--~~~gi~vd~~~g~-l~v~~~~~~---~~ 121 (332)
.++.|.++|.+++.+ ++.|+.++..+++. ..++........ ....+.++|| |+ |.+...+.. .+
T Consensus 20 ~~~~w~~dg~~~~~~--~~~i~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~Spd-g~~l~~~~~~~~~~r~~ 89 (740)
T 4a5s_A 20 YSLRWISDHEYLYKQ--ENNILVFNAEYGNS-------SVFLENSTFDEFGHSINDYSISPD-GQFILLEYNYVKQWRHS 89 (740)
T ss_dssp CCEEECSSSEEEEEE--TTEEEEEETTTCCE-------EEEECTTTTTTCCSCCCEEEECTT-SSEEEEEEEEEECSSSC
T ss_pred cccEECCCCcEEEEc--CCcEEEEECCCCce-------EEEEechhhhhhcccccceEECCC-CCEEEEEECCeeeEEEc
Confidence 478999999877665 78999999987762 134332221111 2245788997 55 444443211 01
Q ss_pred ccceEEEEECCCCcEEEEEecCCCCCCCCCccceEECCCCc-EEEEeCCCCeEEEEcCCC-ceEEEecCCCCC-----Cc
Q 020019 122 KYSAVAAYDLSTWNRLFLTQLSGPSDGKSCADDVTVDAEGN-AYVTDVTGSKIWKVGVKG-EFLSIISSPLFT-----PK 194 (332)
Q Consensus 122 ~~~~l~~~d~~~g~~~~~~~l~~~~~~~~~~ndiavd~dG~-lyvtd~~~~~I~~v~~~g-~~~~~~~~~~~~-----~p 194 (332)
..+.++.||.++++.. .+.. ........++.|||+ |.++. .+.||..+.++ +..++-...... .+
T Consensus 90 ~~~~~~~~d~~~~~~~---~l~~---~~~~~~~~~~SPdG~~la~~~--~~~i~~~~~~~~~~~~lt~~g~~~~~~~g~~ 161 (740)
T 4a5s_A 90 YTASYDIYDLNKRQLI---TEER---IPNNTQWVTWSPVGHKLAYVW--NNDIYVKIEPNLPSYRITWTGKEDIIYNGIT 161 (740)
T ss_dssp EEEEEEEEETTTTEEC---CSSC---CCTTEEEEEECSSTTCEEEEE--TTEEEEESSTTSCCEECCSCCBTTTEEESBC
T ss_pred cceEEEEEECCCCcEE---Eccc---CCCcceeeEECCCCCEEEEEE--CCeEEEEECCCCceEEEcCCCCccceecCcc
Confidence 2356889999988754 2321 123456789999985 54442 36888888764 433322111100 00
Q ss_pred cc---ccCccccCeEEEccCc-eEEEEe
Q 020019 195 EW---YKNLVGLNGIVYHPDG-FLIVIH 218 (332)
Q Consensus 195 ~~---~~~~~~~nGi~~~~dG-~Lyva~ 218 (332)
.+ ...+....+++|+||| .|.++.
T Consensus 162 ~~v~~ee~~~~~~~~~wSpDg~~la~~~ 189 (740)
T 4a5s_A 162 DWVYEEEVFSAYSALWWSPNGTFLAYAQ 189 (740)
T ss_dssp CHHHHHHTSSSSBCEEECTTSSEEEEEE
T ss_pred cccccchhcCCCcceEECCCCCEEEEEE
Confidence 00 0002334579999999 676654
|
| >1tl2_A L10, protein (tachylectin-2); animal lectin, horseshoe CRAB, N-acetylglucosamine, beta- propeller, sugar binding protein; HET: NDG; 2.00A {Tachypleus tridentatus} SCOP: b.67.1.1 PDB: 3kif_A* 3kih_A* | Back alignment and structure |
|---|
Probab=97.60 E-value=0.00042 Score=59.22 Aligned_cols=110 Identities=14% Similarity=0.083 Sum_probs=66.9
Q ss_pred CCccceEECCCCcEEEEeCCCCeEEEEcCC-CceEEEecCCCCCCcccccCccccCeEEEccCceEEEEeCCCCeEEEEe
Q 020019 150 SCADDVTVDAEGNAYVTDVTGSKIWKVGVK-GEFLSIISSPLFTPKEWYKNLVGLNGIVYHPDGFLIVIHTFSGNLFKID 228 (332)
Q Consensus 150 ~~~ndiavd~dG~lyvtd~~~~~I~~v~~~-g~~~~~~~~~~~~~p~~~~~~~~~nGi~~~~dG~Lyva~~~~~~i~~id 228 (332)
....+++++|+|.||.. ..+.+|++++. ++...+.....-... .+-.+-..+.++++|.||+. .+++|||++
T Consensus 41 ~~~~~laf~P~G~LYaV--~~G~Ly~~~~~t~~~~~W~~s~t~IG~---~Gw~~F~a~~fD~~G~LYav--~dG~iyr~~ 113 (236)
T 1tl2_A 41 SNFKFLFLSPGGELYGV--LNDKIYKGTPPTHDNDNWMGRAKKIGN---GGWNQFQFLFFDPNGYLYAV--SKDKLYKAS 113 (236)
T ss_dssp TTCSEEEECTTSCEEEE--ETTEEEEESCCCSTTCCHHHHCEEEEC---SCGGGCSEEEECTTSCEEEE--ETTEEEEES
T ss_pred ccceeEEECCCccEEEE--eCCeEEEECCCCCCcccccccccEecc---cccccceEEEECCCCCEEEe--CCCEEEEeC
Confidence 35569999999999998 67889999984 222222111000000 01112357899999999999 348999998
Q ss_pred CCCCCCc---cceeEEEEecCCCCCCCCeEEEeCCCeEEEEeCC
Q 020019 229 IVDGVGE---GEEIKLIRVAGGPLSFGDGLELLSPTKLVVAGNP 269 (332)
Q Consensus 229 ~~~~~~~---~~~~~~v~~~g~~~~~pdGi~~~~dG~l~va~~~ 269 (332)
+.+.... . .-..|-- ..-..-.-+.++|+|.||.++..
T Consensus 114 pP~~~~~~Wl~-~a~~vg~--~gw~~~~~lff~p~G~Lyav~dg 154 (236)
T 1tl2_A 114 PPQSDTDNWIA-RATEVGS--GGWSGFKFLFFHPNGYLYAVHGQ 154 (236)
T ss_dssp CCCSTTCCHHH-HSEEEEC--SSGGGEEEEEECTTSCEEEEETT
T ss_pred CCcCCCCceec-cccEecc--CCCCceEEEEECCCceEEEEeCC
Confidence 7542110 0 0111211 11123367899999999999933
|
| >3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A | Back alignment and structure |
|---|
Probab=97.59 E-value=0.016 Score=52.62 Aligned_cols=62 Identities=10% Similarity=0.043 Sum_probs=43.8
Q ss_pred cccCeEEEccCceEEEEeCCCCe-EEEEeCCCCCCccceeEEEEecCCCCCCCCeEEEeCCCeEEEEe
Q 020019 201 VGLNGIVYHPDGFLIVIHTFSGN-LFKIDIVDGVGEGEEIKLIRVAGGPLSFGDGLELLSPTKLVVAG 267 (332)
Q Consensus 201 ~~~nGi~~~~dG~Lyva~~~~~~-i~~id~~~~~~~~~~~~~v~~~g~~~~~pdGi~~~~dG~l~va~ 267 (332)
...+.++|+|||.+.++-...++ |..+|+.+++ .+..+.. |........+++.++|+++++.
T Consensus 196 ~~v~~~~~s~~g~~l~s~s~d~~~v~iwd~~~~~----~~~~~~~-g~h~~~v~~~~~s~~~~~l~s~ 258 (355)
T 3vu4_A 196 NPIKMVRLNRKSDMVATCSQDGTIIRVFKTEDGV----LVREFRR-GLDRADVVDMKWSTDGSKLAVV 258 (355)
T ss_dssp SCEEEEEECTTSSEEEEEETTCSEEEEEETTTCC----EEEEEEC-TTCCSCEEEEEECTTSCEEEEE
T ss_pred CceEEEEECCCCCEEEEEeCCCCEEEEEECCCCc----EEEEEEc-CCCCCcEEEEEECCCCCEEEEE
Confidence 34688999999966666677787 8888988762 4554542 1122456789999999887775
|
| >1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1 | Back alignment and structure |
|---|
Probab=97.59 E-value=0.051 Score=54.18 Aligned_cols=111 Identities=14% Similarity=0.099 Sum_probs=69.3
Q ss_pred CCCEEEEEecCCeEEEEECCCCCCCccceeeeEEecccCcCC---------CccceEEEeCCCCeEEEEEeCcCCCccce
Q 020019 55 SGRRFIVSFLDGGIGQVAVPDDYPPGTVLEEVTLVKDLELTG---------NGSLGLVLDHPRNRLLVVAADVFGNKYSA 125 (332)
Q Consensus 55 ~g~~~~~~~~~g~I~~vd~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~gi~vd~~~g~l~v~~~~~~~~~~~~ 125 (332)
+|.+|+++ ..+.|+.+|..+++. .|..++.... ....+++++. +++|+... .+.
T Consensus 66 ~g~vyv~~-~~~~v~AlD~~tG~~--------~W~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~v~v~~~------dg~ 128 (668)
T 1kv9_A 66 DGVIYTSM-SWSRVIAVDAASGKE--------LWRYDPEVAKVKARTSCCDAVNRGVALWG--DKVYVGTL------DGR 128 (668)
T ss_dssp TTEEEEEE-GGGEEEEEETTTCCE--------EEEECCCCCGGGGGGCTTCSCCCCCEEEB--TEEEEECT------TSE
T ss_pred CCEEEEEC-CCCeEEEEECCCChh--------ceEECCCCCccccccccccCCccceEEEC--CEEEEEcC------CCE
Confidence 45666655 368899999988872 3443222110 0124567764 79999864 357
Q ss_pred EEEEECCCCcEEEEEecCCCCCCCCCccceEECCCCcEEEEeCC-----CCeEEEEcCC-CceE
Q 020019 126 VAAYDLSTWNRLFLTQLSGPSDGKSCADDVTVDAEGNAYVTDVT-----GSKIWKVGVK-GEFL 183 (332)
Q Consensus 126 l~~~d~~~g~~~~~~~l~~~~~~~~~~ndiavd~dG~lyvtd~~-----~~~I~~v~~~-g~~~ 183 (332)
|+.+|.++|++.+..+...+..........++. +|.+|+.... .+.|+.+|.. |+..
T Consensus 129 l~alD~~tG~~~W~~~~~~~~~~~~~~~~P~v~-~~~v~vg~~~~~~~~~g~v~a~D~~tG~~~ 191 (668)
T 1kv9_A 129 LIALDAKTGKAIWSQQTTDPAKPYSITGAPRVV-KGKVIIGNGGAEYGVRGFVSAYDADTGKLA 191 (668)
T ss_dssp EEEEETTTCCEEEEEECSCTTSSCBCCSCCEEE-TTEEEECCBCTTTCCBCEEEEEETTTCCEE
T ss_pred EEEEECCCCCEeeeeccCCCCCcceecCCCEEE-CCEEEEeCCCCCcCCCCEEEEEECCCCcEE
Confidence 999999999999887763221111122223343 5678987654 5889999975 7754
|
| >1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.57 E-value=0.0021 Score=64.24 Aligned_cols=156 Identities=12% Similarity=0.076 Sum_probs=87.5
Q ss_pred ccceEEcCCCCEEEEEecCCeEEEEECCCCCCCccceeeeEEecccCcCCCccceEEEeCCCCe-EEEEEeCcC---CCc
Q 020019 47 RECAKWDDSGRRFIVSFLDGGIGQVAVPDDYPPGTVLEEVTLVKDLELTGNGSLGLVLDHPRNR-LLVVAADVF---GNK 122 (332)
Q Consensus 47 pegia~d~~g~~~~~~~~~g~I~~vd~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~vd~~~g~-l~v~~~~~~---~~~ 122 (332)
+.+++|.++|++++ ...++.|+.++..+++. . .+.............++++|+ |+ |.++..... ...
T Consensus 18 ~~~~~~s~dg~~~~-~~~d~~i~~~~~~~g~~-----~--~~~~~~~~~~~~~~~~~~SpD-g~~la~~~~~~~~~~~s~ 88 (719)
T 1z68_A 18 TFFPNWISGQEYLH-QSADNNIVLYNIETGQS-----Y--TILSNRTMKSVNASNYGLSPD-RQFVYLESDYSKLWRYSY 88 (719)
T ss_dssp CCCCEESSSSEEEE-ECTTSCEEEEESSSCCE-----E--EEECHHHHHTTTCSEEEECTT-SSEEEEEEEEEECSSSCE
T ss_pred CCccEECCCCeEEE-EcCCCCEEEEEcCCCcE-----E--EEEccccccccceeeEEECCC-CCeEEEEecCceeEEeec
Confidence 34789999996444 43578999999987762 1 333211110012578899997 65 444432100 011
Q ss_pred cceEEEEECCCCcEEEEEecCCCCCCCCCccceEECCCCc-EEEEeCCCCeEEEEcCC-CceEEEecCCCCC-----Ccc
Q 020019 123 YSAVAAYDLSTWNRLFLTQLSGPSDGKSCADDVTVDAEGN-AYVTDVTGSKIWKVGVK-GEFLSIISSPLFT-----PKE 195 (332)
Q Consensus 123 ~~~l~~~d~~~g~~~~~~~l~~~~~~~~~~ndiavd~dG~-lyvtd~~~~~I~~v~~~-g~~~~~~~~~~~~-----~p~ 195 (332)
.+.+++||.++++......+. .....+++.|||+ |.++. .+.|+..+.+ |+..++....... .+.
T Consensus 89 ~~~i~~~d~~~g~~~~~~~l~------~~~~~~~~SPDG~~la~~~--~~~i~~~~~~~g~~~~l~~~~~~~~v~~g~~~ 160 (719)
T 1z68_A 89 TATYYIYDLSNGEFVRGNELP------RPIQYLCWSPVGSKLAYVY--QNNIYLKQRPGDPPFQITFNGRENKIFNGIPD 160 (719)
T ss_dssp EEEEEEEETTTTEECCSSCCC------SSBCCEEECSSTTCEEEEE--TTEEEEESSTTSCCEECCCCCBTTTEEESSCC
T ss_pred ceEEEEEECCCCccccceecC------cccccceECCCCCEEEEEE--CCeEEEEeCCCCCcEEEecCCCcCCeEccccc
Confidence 357999999988752111221 2356799999996 54443 4689999876 4443332111000 000
Q ss_pred c---ccCccccCeEEEccCc-eEEEEeC
Q 020019 196 W---YKNLVGLNGIVYHPDG-FLIVIHT 219 (332)
Q Consensus 196 ~---~~~~~~~nGi~~~~dG-~Lyva~~ 219 (332)
+ .+.+....+++|+||| .|+++..
T Consensus 161 ~v~~ee~~~~~~~~~wSPDG~~la~~~~ 188 (719)
T 1z68_A 161 WVYEEEMLATKYALWWSPNGKFLAYAEF 188 (719)
T ss_dssp HHHHHHTTCSSCCEEECTTSSEEEEEEE
T ss_pred ceeeeecccCcccEEECCCCCEEEEEEE
Confidence 0 0001123589999999 7776653
|
| >3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A | Back alignment and structure |
|---|
Probab=97.57 E-value=0.0067 Score=54.13 Aligned_cols=118 Identities=14% Similarity=0.064 Sum_probs=74.2
Q ss_pred cccceEEcCCCCEEEEEecCCeEEEEECCCCCCCccceeeeEEecccCcCCCccceEEEeCC-CCeEEEEEeCcCCCccc
Q 020019 46 FRECAKWDDSGRRFIVSFLDGGIGQVAVPDDYPPGTVLEEVTLVKDLELTGNGSLGLVLDHP-RNRLLVVAADVFGNKYS 124 (332)
Q Consensus 46 ~pegia~d~~g~~~~~~~~~g~I~~vd~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~vd~~-~g~l~v~~~~~~~~~~~ 124 (332)
....++++++|+++++...++.|..++..+++. ....++.... .....+++.++ +++++++... .+
T Consensus 15 ~V~~v~~s~~g~~lasgs~D~~v~lwd~~~~~~----~~~~~l~gH~----~~V~~v~~~~~~~~~~l~s~s~-----D~ 81 (316)
T 3bg1_A 15 MIHDAQMDYYGTRLATCSSDRSVKIFDVRNGGQ----ILIADLRGHE----GPVWQVAWAHPMYGNILASCSY-----DR 81 (316)
T ss_dssp CEEEEEECGGGCEEEEEETTTEEEEEEEETTEE----EEEEEEECCS----SCEEEEEECCGGGSSCEEEEET-----TS
T ss_pred eEEEeeEcCCCCEEEEEeCCCeEEEEEecCCCc----EEEEEEcCCC----ccEEEEEeCCCCCCCEEEEEEC-----CC
Confidence 446789999999888877789998888765431 0000222111 25678888642 2444444332 35
Q ss_pred eEEEEECCCCcEEEEEecCCCCCCCCCccceEECCC--CcEEEEeCCCCeEEEEcCC
Q 020019 125 AVAAYDLSTWNRLFLTQLSGPSDGKSCADDVTVDAE--GNAYVTDVTGSKIWKVGVK 179 (332)
Q Consensus 125 ~l~~~d~~~g~~~~~~~l~~~~~~~~~~ndiavd~d--G~lyvtd~~~~~I~~v~~~ 179 (332)
.+..||.++++......+.+ .....+.+++.|+ |.++++-+..+.|..++..
T Consensus 82 ~v~iWd~~~~~~~~~~~~~~---h~~~V~~v~~~p~~~g~~lasgs~D~~i~lwd~~ 135 (316)
T 3bg1_A 82 KVIIWREENGTWEKSHEHAG---HDSSVNSVCWAPHDYGLILACGSSDGAISLLTYT 135 (316)
T ss_dssp CEEEECCSSSCCCEEEEECC---CSSCCCEEEECCTTTCSCEEEECSSSCEEEEEEC
T ss_pred EEEEEECCCCcceEEEEccC---CCCceEEEEECCCCCCcEEEEEcCCCCEEEEecC
Confidence 68899998875333334421 1246788999997 7788887777877776654
|
| >1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida} | Back alignment and structure |
|---|
Probab=97.54 E-value=0.02 Score=57.33 Aligned_cols=80 Identities=9% Similarity=-0.049 Sum_probs=48.0
Q ss_pred CeEEEEcCC-CceEEEecCCCCCCcccccCccccCeEEEccCceEEEEeCCCCeEEEEeCCCCCCccceeEEEEecCCCC
Q 020019 171 SKIWKVGVK-GEFLSIISSPLFTPKEWYKNLVGLNGIVYHPDGFLIVIHTFSGNLFKIDIVDGVGEGEEIKLIRVAGGPL 249 (332)
Q Consensus 171 ~~I~~v~~~-g~~~~~~~~~~~~~p~~~~~~~~~nGi~~~~dG~Lyva~~~~~~i~~id~~~~~~~~~~~~~v~~~g~~~ 249 (332)
+.|..+|+. |+..-..... . | ...|.....+|.+|++ +.++.|+.+|.++++ .+-.+.++....
T Consensus 455 g~l~A~D~~tG~~~W~~~~~-~--~-------~~~g~~~tagglvf~g-t~dg~l~a~D~~tG~----~lw~~~~~~~~~ 519 (689)
T 1yiq_A 455 GKLIAWDPVKQQAAWEVPYV-T--I-------FNGGTLSTAGNLVFEG-SADGRVIAYAADTGE----KLWEQPAASGVM 519 (689)
T ss_dssp EEEEEEETTTTEEEEEEEES-S--S-------CCCCEEEETTTEEEEE-CTTSEEEEEETTTCC----EEEEEECSSCCC
T ss_pred eeEEEEECCCCCeEeEccCC-C--C-------ccCccceECCCEEEEE-CCCCcEEEEECCCCc----cceeeeCCCCcc
Confidence 567888876 5543222111 0 0 1123333344588887 567899999999883 555566552222
Q ss_pred CCCCeEEEeCCCeEEEEe
Q 020019 250 SFGDGLELLSPTKLVVAG 267 (332)
Q Consensus 250 ~~pdGi~~~~dG~l~va~ 267 (332)
..| |.+..+|+.||+-
T Consensus 520 ~~p--~ty~~~G~qyv~~ 535 (689)
T 1yiq_A 520 AAP--VTYSVDGEQYVTF 535 (689)
T ss_dssp SCC--EEEEETTEEEEEE
T ss_pred cCc--eEEEECCEEEEEE
Confidence 344 7777889999984
|
| >2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus} | Back alignment and structure |
|---|
Probab=97.51 E-value=0.041 Score=49.04 Aligned_cols=147 Identities=10% Similarity=0.056 Sum_probs=86.3
Q ss_pred ccceEEcCCCCEEE-EEecC----CeEEEEECCCCCCCccceeeeEEecccCcCCCccceEEEeCCCCeEEEEEeCc---
Q 020019 47 RECAKWDDSGRRFI-VSFLD----GGIGQVAVPDDYPPGTVLEEVTLVKDLELTGNGSLGLVLDHPRNRLLVVAADV--- 118 (332)
Q Consensus 47 pegia~d~~g~~~~-~~~~~----g~I~~vd~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~vd~~~g~l~v~~~~~--- 118 (332)
...++|+|||+.++ ++... ..|+.++..+++. . .+...+ . ...+++.|+...|+++..+.
T Consensus 61 ~~~~~~SpDg~~la~~~~~~~~~~~~l~~~~~~~g~~-----~--~l~~~~----~-~~~~~wspdg~~l~~~~~~~~~~ 128 (347)
T 2gop_A 61 ATMPRISPDGKKIAFMRANEEKKVSEIWVADLETLSS-----K--KILEAK----N-IRSLEWNEDSRKLLIVGFKRRED 128 (347)
T ss_dssp CEEEEECTTSSEEEEEEEETTTTEEEEEEEETTTTEE-----E--EEEEES----E-EEEEEECTTSSEEEEEEECCCC-
T ss_pred CCCeEECCCCCEEEEEEeccCCCcceEEEEECCCCce-----E--EEEcCC----C-ccceeECCCCCEEEEEEccCCCc
Confidence 45689999998554 44322 3599999876652 1 232211 1 56788888744566654320
Q ss_pred --------------C----CCccceEEEEECCCCcEEEEEecCCCCCCCCCccceEECCCCcEEEEeCC---------CC
Q 020019 119 --------------F----GNKYSAVAAYDLSTWNRLFLTQLSGPSDGKSCADDVTVDAEGNAYVTDVT---------GS 171 (332)
Q Consensus 119 --------------~----~~~~~~l~~~d~~~g~~~~~~~l~~~~~~~~~~ndiavd~dG~lyvtd~~---------~~ 171 (332)
+ ......|+++|+++++....+..+ ....+++.||| ++++... ..
T Consensus 129 ~~~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~l~~~-------~~~~~~~spdg-~~~~~~~~~~~~~~~~~~ 200 (347)
T 2gop_A 129 EDFIFEDDVPAWFDDLGFFDGEKTTFWIFDTESEEVIEEFEKP-------RFSSGIWHRDK-IVVNVPHREIIPQYFKFW 200 (347)
T ss_dssp --------CCCC---------CEEEEEEEETTTTEEEEEEEEE-------TTCEEEEETTE-EEEEEECCCSSCCSSCCE
T ss_pred CCcEEEcccceeecCcccccCccceEEEEECCCCeEEeeecCC-------CcccccCCCCe-EEEEEecccccccccccc
Confidence 0 001357899999888762222211 34568899999 7665422 34
Q ss_pred eEEEEcCCCceEEEecCCCCCCcccccCccccCeEEEccCc-eEEEEeCC-------CCeEEEEe
Q 020019 172 KIWKVGVKGEFLSIISSPLFTPKEWYKNLVGLNGIVYHPDG-FLIVIHTF-------SGNLFKID 228 (332)
Q Consensus 172 ~I~~v~~~g~~~~~~~~~~~~~p~~~~~~~~~nGi~~~~dG-~Lyva~~~-------~~~i~~id 228 (332)
.||.++ .|+...+... . .-..++||| .|++.... ..+|+.++
T Consensus 201 ~l~~~d-~~~~~~l~~~--~------------~~~~~spdg~~l~~~~~~~~~~~~~~~~l~~~d 250 (347)
T 2gop_A 201 DIYIWE-DGKEEKMFEK--V------------SFYAVDSDGERILLYGKPEKKYMSEHNKLYIYD 250 (347)
T ss_dssp EEEEEE-TTEEEEEEEE--E------------SEEEEEECSSCEEEEECCSSSCCCSSCEEEEEC
T ss_pred cEEEeC-CCceEEeccC--c------------ceeeECCCCCEEEEEEccccCCccccceEEEEC
Confidence 799998 6665443321 1 011238999 67665533 35799998
|
| >2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus} | Back alignment and structure |
|---|
Probab=97.50 E-value=0.021 Score=56.92 Aligned_cols=158 Identities=9% Similarity=-0.021 Sum_probs=85.6
Q ss_pred CCCCEE-EEEec----CCeEEEEECCCCCCCccceeeeEEecccCcC--C-CccceEEEeCCCCeEEEEEeCcCCCccce
Q 020019 54 DSGRRF-IVSFL----DGGIGQVAVPDDYPPGTVLEEVTLVKDLELT--G-NGSLGLVLDHPRNRLLVVAADVFGNKYSA 125 (332)
Q Consensus 54 ~~g~~~-~~~~~----~g~I~~vd~~~~~~~~~~~~~~~~~~~~~~~--~-~~~~gi~vd~~~g~l~v~~~~~~~~~~~~ 125 (332)
++|+.+ |+... .+.|++.+..+++. + .+.....+. + ....++.+.|+ |+..+...+..+.....
T Consensus 77 ~dG~~~~~~~~~~~~~~~~l~~~~~~~~~~-----~--~l~d~~~~a~~~~~~~~~~~~SPD-G~~la~~~~~~G~~~~~ 148 (695)
T 2bkl_A 77 RRNGRFFYVRTHKDKEKAILYWRQGESGQE-----K--VLLDPNGWSKDGTVSLGTWAVSWD-GKKVAFAQKPNAADEAV 148 (695)
T ss_dssp EETTEEEEEEECTTCSSCEEEEEESTTSCC-----E--EEECGGGSSSSSCEEEEEEEECTT-SSEEEEEEEETTCSCCE
T ss_pred EECCEEEEEEEcCCCeEEEEEEEcCCCCCc-----E--EEEchHHhccCCCEEEEEEEECCC-CCEEEEEECCCCCceEE
Confidence 556644 44432 25689998765542 2 344211211 1 13568899997 66333222211112357
Q ss_pred EEEEECCCCcEEEEEecCCCCCCCCCccceEECCCCc-EEEEeCC------------CCeEEEEcCCCce---EEEecCC
Q 020019 126 VAAYDLSTWNRLFLTQLSGPSDGKSCADDVTVDAEGN-AYVTDVT------------GSKIWKVGVKGEF---LSIISSP 189 (332)
Q Consensus 126 l~~~d~~~g~~~~~~~l~~~~~~~~~~ndiavd~dG~-lyvtd~~------------~~~I~~v~~~g~~---~~~~~~~ 189 (332)
|+++|+++|+......+. .....++++.|||+ |+++... ...|++++.++.. ..+...+
T Consensus 149 i~v~dl~tg~~~~~~~~~-----~~~~~~~~wspDg~~l~~~~~d~~~~~~~~~~~~~~~v~~~~l~t~~~~~~lv~~~~ 223 (695)
T 2bkl_A 149 LHVIDVDSGEWSKVDVIE-----GGKYATPKWTPDSKGFYYEWLPTDPSIKVDERPGYTTIRYHTLGTEPSKDTVVHERT 223 (695)
T ss_dssp EEEEETTTCCBCSSCCBS-----CCTTCCCEECTTSSEEEEEECCCCTTSCGGGGGGGCEEEEEETTSCGGGCEEEECCC
T ss_pred EEEEECCCCCCcCCcccC-----cccccceEEecCCCEEEEEEecCCCCCccccCCCCCEEEEEECCCCchhceEEEecC
Confidence 999999998753111121 11226799999996 5555432 2348888876321 2222211
Q ss_pred CCCCcccccCccccCeEEEccCc-eEEEEeCC---CCeEEEEeCCCC
Q 020019 190 LFTPKEWYKNLVGLNGIVYHPDG-FLIVIHTF---SGNLFKIDIVDG 232 (332)
Q Consensus 190 ~~~~p~~~~~~~~~nGi~~~~dG-~Lyva~~~---~~~i~~id~~~~ 232 (332)
. ......++.+++|| .|+++... +..||.++..++
T Consensus 224 ~--------~~~~~~~~~~SpDG~~l~~~~~~~~~~~~l~~~~~~~~ 262 (695)
T 2bkl_A 224 G--------DPTTFLQSDLSRDGKYLFVYILRGWSENDVYWKRPGEK 262 (695)
T ss_dssp C--------CTTCEEEEEECTTSCCEEEEEEETTTEEEEEEECTTCS
T ss_pred C--------CCEEEEEEEECCCCCEEEEEEeCCCCceEEEEEcCCCC
Confidence 0 01223588999999 77665543 347888866544
|
| >3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A | Back alignment and structure |
|---|
Probab=97.49 E-value=0.044 Score=47.96 Aligned_cols=128 Identities=12% Similarity=-0.035 Sum_probs=76.9
Q ss_pred CccccceEEcCC--CCEEEEEecCCeEEEEECCCCCCCccceeeeEEe--c-ccCcCCCccceEEEeCC--CCeEEEEEe
Q 020019 44 SFFRECAKWDDS--GRRFIVSFLDGGIGQVAVPDDYPPGTVLEEVTLV--K-DLELTGNGSLGLVLDHP--RNRLLVVAA 116 (332)
Q Consensus 44 ~~~pegia~d~~--g~~~~~~~~~g~I~~vd~~~~~~~~~~~~~~~~~--~-~~~~~~~~~~gi~vd~~--~g~l~v~~~ 116 (332)
......++++++ ++.+++...++.|..+|..+++............ . .+.........+.+.++ ++.++++..
T Consensus 110 ~~~v~~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~l~~~~ 189 (351)
T 3f3f_A 110 KGSLYSVKFAPAHLGLKLACLGNDGILRLYDALEPSDLRSWTLTSEMKVLSIPPANHLQSDFCLSWCPSRFSPEKLAVSA 189 (351)
T ss_dssp SSCEEEEEECCGGGCSEEEEEETTCEEEEEECSSTTCTTCCEEEEEEESCSCCCSSCSCCCEEEEECCCSSSCCEEEEEE
T ss_pred CCceeEEEEcCCCCCcEEEEecCCCcEEEecCCChHHhccccccccccccccccCCcccceeEEEeccCCCCCcEEEEec
Confidence 335577999999 8888877778999999987665311000000000 0 01111125678888875 244444433
Q ss_pred CcCCCccceEEEEECCCCcEEEEEecCCCCCCCCCccceEECCCC----cEEEEeCCCCeEEEEcCC
Q 020019 117 DVFGNKYSAVAAYDLSTWNRLFLTQLSGPSDGKSCADDVTVDAEG----NAYVTDVTGSKIWKVGVK 179 (332)
Q Consensus 117 ~~~~~~~~~l~~~d~~~g~~~~~~~l~~~~~~~~~~ndiavd~dG----~lyvtd~~~~~I~~v~~~ 179 (332)
. .+.+..++...++......+.+ .....+.+++.|+| +++++-...+.|..++..
T Consensus 190 ~-----~~~~~~~~~~~~~~~~~~~~~~---h~~~i~~~~~~p~~~~~~~~l~s~~~dg~i~iwd~~ 248 (351)
T 3f3f_A 190 L-----EQAIIYQRGKDGKLHVAAKLPG---HKSLIRSISWAPSIGRWYQLIATGCKDGRIRIFKIT 248 (351)
T ss_dssp T-----TEEEEEEECTTSCEEEEEECCC---CCSCEEEEEECCCSSCSSEEEEEEETTSCEEEEEEE
T ss_pred C-----CCcEEEEccCCCceeeeeecCC---CCcceeEEEECCCCCCcceEEEEEcCCCeEEEEeCC
Confidence 2 3456666777666654455532 13467889999998 788887777877776654
|
| >1flg_A Protein (quinoprotein ethanol dehydrogenase); superbarrel, oxidoreductase; HET: PQQ; 2.60A {Pseudomonas aeruginosa} SCOP: b.70.1.1 | Back alignment and structure |
|---|
Probab=97.48 E-value=0.048 Score=53.51 Aligned_cols=81 Identities=10% Similarity=0.052 Sum_probs=47.5
Q ss_pred CCeEEEEcCC-CceEEEecCCCCCCcccccCccccCeEEEccCceEEEEeCCCCeEEEEeCCCCCCccceeEEEEecCCC
Q 020019 170 GSKIWKVGVK-GEFLSIISSPLFTPKEWYKNLVGLNGIVYHPDGFLIVIHTFSGNLFKIDIVDGVGEGEEIKLIRVAGGP 248 (332)
Q Consensus 170 ~~~I~~v~~~-g~~~~~~~~~~~~~p~~~~~~~~~nGi~~~~dG~Lyva~~~~~~i~~id~~~~~~~~~~~~~v~~~g~~ 248 (332)
.+.|+.+|+. |+..-..... . | ...|.....+|.+|++. ..+.|+.+|.++++ .+-.+.++...
T Consensus 465 ~G~l~A~D~~tG~~~W~~~~~-~--~-------~~~g~~~tagglvf~g~-~dg~l~A~D~~tG~----~lW~~~~~~g~ 529 (582)
T 1flg_A 465 VGSLRAMDPVSGKVVWEHKEH-L--P-------LWAGVLATAGNLVFTGT-GDGYFKAFDAKSGK----ELWKFQTGSGI 529 (582)
T ss_dssp SEEEEEECTTTCCEEEEEEES-S--C-------CCSCCEEETTTEEEEEC-TTSEEEEEETTTCC----EEEEEECSSCC
T ss_pred cceEEEEECCCCCEEEEecCC-C--C-------CcccceEeCCCEEEEEC-CCCcEEEEECCCCC----EEEEecCCCCc
Confidence 4678888875 6643212111 0 1 11122233466888865 57889999999883 45555554212
Q ss_pred CCCCCeEEEeCCCeEEEEe
Q 020019 249 LSFGDGLELLSPTKLVVAG 267 (332)
Q Consensus 249 ~~~pdGi~~~~dG~l~va~ 267 (332)
...| |.+..+|++||+.
T Consensus 530 ~a~P--~~y~~~G~qYv~~ 546 (582)
T 1flg_A 530 VSPP--ITWEQDGEQYLGV 546 (582)
T ss_dssp CSCC--EEEEETTEEEEEE
T ss_pred ccCc--eEEEECCEEEEEE
Confidence 2333 6777889999984
|
| >4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A | Back alignment and structure |
|---|
Probab=97.43 E-value=0.073 Score=49.17 Aligned_cols=155 Identities=13% Similarity=0.167 Sum_probs=97.4
Q ss_pred ccccceEEcCCCCEEEEEecCCeEEEEECCCCCCCccceeeeEEecccCcCCCccceEEEeCCCCeEEEEEeCcCCCccc
Q 020019 45 FFRECAKWDDSGRRFIVSFLDGGIGQVAVPDDYPPGTVLEEVTLVKDLELTGNGSLGLVLDHPRNRLLVVAADVFGNKYS 124 (332)
Q Consensus 45 ~~pegia~d~~g~~~~~~~~~g~I~~vd~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~vd~~~g~l~v~~~~~~~~~~~ 124 (332)
+|..-++|+++ +++.+.+ ++.|+.+|..+++. .+ .+...+ ....+..+++.++ |+++++... .+
T Consensus 106 ~y~~~l~wS~~-n~lAvgl-d~tV~lWd~~tg~~----~~---~~~~~~-~~~~V~sv~fspd-g~~lasgs~-----Dg 169 (420)
T 4gga_A 106 YYLNLVDWSSG-NVLAVAL-DNSVYLWSASSGDI----LQ---LLQMEQ-PGEYISSVAWIKE-GNYLAVGTS-----SA 169 (420)
T ss_dssp TTCBCEEECTT-SEEEEEE-TTEEEEEETTTCCE----EE---EEECCS-TTCCEEEEEECTT-SSEEEEEET-----TS
T ss_pred ccceeEEECCC-CEEEEEe-CCEEEEEECCCCCE----EE---EEEecC-CCCcEEEEEECCC-CCEEEEEEC-----CC
Confidence 46677899875 5555555 79999999988762 22 222111 1125789999997 665544332 45
Q ss_pred eEEEEECCCCcEEEEEecCCCCCCCCCccceEECCCCcEEEEeCCCCeEEEEcCCCc--eEEEecCCCCCCcccccCccc
Q 020019 125 AVAAYDLSTWNRLFLTQLSGPSDGKSCADDVTVDAEGNAYVTDVTGSKIWKVGVKGE--FLSIISSPLFTPKEWYKNLVG 202 (332)
Q Consensus 125 ~l~~~d~~~g~~~~~~~l~~~~~~~~~~ndiavd~dG~lyvtd~~~~~I~~v~~~g~--~~~~~~~~~~~~p~~~~~~~~ 202 (332)
.|.+||.++++......- . ..... ++..++.+.++-+..+.+...+.... ....+.. ....
T Consensus 170 ~v~iWd~~~~~~~~~~~~--h---~~~v~--~~s~~~~~l~sgs~d~~i~~~d~~~~~~~~~~~~~----------h~~~ 232 (420)
T 4gga_A 170 EVQLWDVQQQKRLRNMTS--H---SARVG--SLSWNSYILSSGSRSGHIHHHDVRVAEHHVATLSG----------HSQE 232 (420)
T ss_dssp CEEEEETTTTEEEEEECC--C---SSCEE--EEEEETTEEEEEETTSEEEEEETTSSSCEEEEEEC----------CSSC
T ss_pred eEEEEEcCCCcEEEEEeC--C---CCceE--EEeeCCCEEEEEeCCCceeEeeecccceeeEEecc----------cccc
Confidence 689999999887654322 1 12333 34445678888878888888775532 2222211 1123
Q ss_pred cCeEEEccCceEEEEeCCCCeEEEEeCCCC
Q 020019 203 LNGIVYHPDGFLIVIHTFSGNLFKIDIVDG 232 (332)
Q Consensus 203 ~nGi~~~~dG~Lyva~~~~~~i~~id~~~~ 232 (332)
..++.+.++|...++-...+.+..++..++
T Consensus 233 ~~~~~~~~~g~~l~s~~~D~~v~i~~~~~~ 262 (420)
T 4gga_A 233 VCGLRWAPDGRHLASGGNDNLVNVWPSAPG 262 (420)
T ss_dssp EEEEEECTTSSEEEEEETTSCEEEEESSCC
T ss_pred eeeeeecCCCCeeeeeeccccceEEeeccc
Confidence 568999999955556666778888887765
|
| >2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=97.43 E-value=0.036 Score=54.13 Aligned_cols=186 Identities=12% Similarity=0.131 Sum_probs=115.5
Q ss_pred cccceEEcCCCCEEEEEecCCeEEEEECCCCCCCccceeeeEEec-ccCcCCCccceEEEeCCCCeEEEEEeCcCCCccc
Q 020019 46 FRECAKWDDSGRRFIVSFLDGGIGQVAVPDDYPPGTVLEEVTLVK-DLELTGNGSLGLVLDHPRNRLLVVAADVFGNKYS 124 (332)
Q Consensus 46 ~pegia~d~~g~~~~~~~~~g~I~~vd~~~~~~~~~~~~~~~~~~-~~~~~~~~~~gi~vd~~~g~l~v~~~~~~~~~~~ 124 (332)
+..+++|+|+|..+.+...+|.|..++.++ . +. ... ...........++++|+...|+++.. .+
T Consensus 87 ~V~~vawSPdG~~LAs~s~dg~V~iwd~~~-~-----l~---~l~~~~~~~~~sv~svafSPDG~~LAsgs~------DG 151 (588)
T 2j04_A 87 YPRVCKPSPIDDWMAVLSNNGNVSVFKDNK-M-----LT---NLDSKGNLSSRTYHCFEWNPIESSIVVGNE------DG 151 (588)
T ss_dssp CEEEEEECSSSSCEEEEETTSCEEEEETTE-E-----EE---ECCCSSCSTTTCEEEEEECSSSSCEEEEET------TS
T ss_pred cEEEEEECCCCCEEEEEeCCCcEEEEeCCc-e-----ee---eccCCCccccccEEEEEEcCCCCEEEEEcC------CC
Confidence 567899999999887777889999998432 1 11 221 11011235789999998334444443 46
Q ss_pred eEEEEECCCCcE-------EEEEecCCCCCCCCCccceEECCCCcEEEEeCCCCeEEEEcCCCceE----EEecCCCCCC
Q 020019 125 AVAAYDLSTWNR-------LFLTQLSGPSDGKSCADDVTVDAEGNAYVTDVTGSKIWKVGVKGEFL----SIISSPLFTP 193 (332)
Q Consensus 125 ~l~~~d~~~g~~-------~~~~~l~~~~~~~~~~ndiavd~dG~lyvtd~~~~~I~~v~~~g~~~----~~~~~~~~~~ 193 (332)
.|..||.+++.. ...+.....+ .......+++.||| +++-+..+.|+..+.++... ..+...
T Consensus 152 tVkIWd~~~~~l~~~~~i~l~ti~~~~~g-h~~~V~sVawSPdg--Laass~D~tVrlWd~~~~~~~~~~~tL~~~---- 224 (588)
T 2j04_A 152 ELQFFSIRKNSENTPEFYFESSIRLSDAG-SKDWVTHIVWYEDV--LVAALSNNSVFSMTVSASSHQPVSRMIQNA---- 224 (588)
T ss_dssp EEEEEECCCCTTTCCCCEEEEEEECSCTT-CCCCEEEEEEETTE--EEEEETTCCEEEECCCSSSSCCCEEEEECC----
T ss_pred EEEEEECCCCccccccceeeeeeeccccc-ccccEEEEEEcCCc--EEEEeCCCeEEEEECCCCccccceeeeccc----
Confidence 789999988752 2333321111 12467789999999 56666778888888775431 112100
Q ss_pred cccccCccccCeEEEccCceEEEEeCCCCeEEEEeCCCCCCccceeEEEEecCCCCCCCCeEEE--eCCCeEEEEeC
Q 020019 194 KEWYKNLVGLNGIVYHPDGFLIVIHTFSGNLFKIDIVDGVGEGEEIKLIRVAGGPLSFGDGLEL--LSPTKLVVAGN 268 (332)
Q Consensus 194 p~~~~~~~~~nGi~~~~dG~Lyva~~~~~~i~~id~~~~~~~~~~~~~v~~~g~~~~~pdGi~~--~~dG~l~va~~ 268 (332)
.......++|+ +..|..+. .++|..++..++ ....... | ......+|++ .+||..+++..
T Consensus 225 -----h~~~V~svaFs-g~~LASa~--~~tIkLWd~~~~-----~~~~~~~-g-h~~~V~~va~~~s~d~~~La~a~ 286 (588)
T 2j04_A 225 -----SRRKITDLKIV-DYKVVLTC--PGYVHKIDLKNY-----SISSLKT-G-SLENFHIIPLNHEKESTILLMSN 286 (588)
T ss_dssp -----CSSCCCCEEEE-TTEEEEEC--SSEEEEEETTTT-----EEEEEEC-S-CCSCCCEEEETTCSSCEEEEECS
T ss_pred -----ccCcEEEEEEE-CCEEEEEe--CCeEEEEECCCC-----eEEEEEc-C-CCceEEEEEeeeCCCCCEEEEEc
Confidence 11346789998 44666663 478999998866 3333433 2 3355678888 88886666643
|
| >2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A | Back alignment and structure |
|---|
Probab=97.41 E-value=0.029 Score=49.35 Aligned_cols=196 Identities=7% Similarity=-0.035 Sum_probs=106.7
Q ss_pred ccceEEcC--CCCEEEEEecCCeEEEEECCCCCCCccceeeeEEecccCcCCCccceEEEeCCC-CeEEEEEeCcCCCcc
Q 020019 47 RECAKWDD--SGRRFIVSFLDGGIGQVAVPDDYPPGTVLEEVTLVKDLELTGNGSLGLVLDHPR-NRLLVVAADVFGNKY 123 (332)
Q Consensus 47 pegia~d~--~g~~~~~~~~~g~I~~vd~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~vd~~~-g~l~v~~~~~~~~~~ 123 (332)
...++|.+ +|+++++...++.|..++..+++.. . ....... ......+++.++. +.++++... .
T Consensus 56 V~~v~~s~~~~g~~l~s~s~D~~v~iWd~~~~~~~----~-~~~~~~h---~~~v~~v~~~p~~~g~~l~s~s~-----d 122 (297)
T 2pm7_B 56 VWRVDWAHPKFGTILASCSYDGKVMIWKEENGRWS----Q-IAVHAVH---SASVNSVQWAPHEYGPMLLVASS-----D 122 (297)
T ss_dssp EEEEEECCGGGCSEEEEEETTTEEEEEEBSSSCBC----C-CEEECCC---SSCEEEEEECCGGGCSEEEEEET-----T
T ss_pred eEEEEecCCCcCCEEEEEcCCCEEEEEEcCCCceE----E-EEEeecC---CCceeEEEeCcCCCCcEEEEEEC-----C
Confidence 35678865 3787777778899999998765420 1 0111110 1256789998852 444444332 3
Q ss_pred ceEEEEECCCCcEEEEEecCCCCCCCCCccceEECCC-------------CcEEEEeCCCCeEEEEcCC-Cc-eEEEecC
Q 020019 124 SAVAAYDLSTWNRLFLTQLSGPSDGKSCADDVTVDAE-------------GNAYVTDVTGSKIWKVGVK-GE-FLSIISS 188 (332)
Q Consensus 124 ~~l~~~d~~~g~~~~~~~l~~~~~~~~~~ndiavd~d-------------G~lyvtd~~~~~I~~v~~~-g~-~~~~~~~ 188 (332)
+.+..||.+++.......+.+. ....+.+++.|+ ++.+++-+..+.|...+.. ++ ......
T Consensus 123 ~~v~~wd~~~~~~~~~~~~~~h---~~~v~~~~~~p~~~~~~~~~~~~~~~~~l~sgs~D~~v~lwd~~~~~~~~~~~~- 198 (297)
T 2pm7_B 123 GKVSVVEFKENGTTSPIIIDAH---AIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLES- 198 (297)
T ss_dssp SEEEEEEBCSSSCBCCEEEECC---SSCEEEEEECCCC------------CCEEEEEETTSCEEEEEEETTTTEEEEEE-
T ss_pred CcEEEEEecCCCceeeeeeecc---cCccceEeecCCcccccccCCCCCCcceEEEEcCCCcEEEEEEcCCCceEEEEE-
Confidence 5688899876532111112111 234556777775 4577777777776666543 22 111100
Q ss_pred CCCCCcccccCccccCeEEEccCc---eEEEEeCCCCeEEEEeCCCCCCccceeEEEEecCCCCCCCCeEEEeCCCeEEE
Q 020019 189 PLFTPKEWYKNLVGLNGIVYHPDG---FLIVIHTFSGNLFKIDIVDGVGEGEEIKLIRVAGGPLSFGDGLELLSPTKLVV 265 (332)
Q Consensus 189 ~~~~~p~~~~~~~~~nGi~~~~dG---~Lyva~~~~~~i~~id~~~~~~~~~~~~~v~~~g~~~~~pdGi~~~~dG~l~v 265 (332)
.+. ......+.++|+|++ .++++-...++|..++++.+.. ..................+++.++|++++
T Consensus 199 -~l~-----~H~~~V~~v~~sp~~~~~~~las~s~D~~v~iWd~~~~~~--~~~~~~~~~~~~~~~v~~~~~s~~g~~la 270 (297)
T 2pm7_B 199 -TLE-----GHSDWVRDVAWSPTVLLRSYMASVSQDRTCIIWTQDNEQG--PWKKTLLKEEKFPDVLWRASWSLSGNVLA 270 (297)
T ss_dssp -EEC-----CCSSCEEEEEECCCCSSSEEEEEEETTSCEEEEEESSTTS--CCEEEESSSSCCSSCEEEEEECSSSCCEE
T ss_pred -Eec-----CCCCceEEEEECCCCCCceEEEEEECCCcEEEEEeCCCCC--ccceeeeecccCCCcEEEEEECCCCCEEE
Confidence 010 011235789999984 6666666777787777664311 01111111001113345788999998777
Q ss_pred Ee
Q 020019 266 AG 267 (332)
Q Consensus 266 a~ 267 (332)
+.
T Consensus 271 s~ 272 (297)
T 2pm7_B 271 LS 272 (297)
T ss_dssp EE
T ss_pred EE
Confidence 64
|
| >3zwu_A Alkaline phosphatase PHOX; hydrolase, beta-propeller, iron; 1.39A {Pseudomonas fluorescens} | Back alignment and structure |
|---|
Probab=97.37 E-value=0.0027 Score=62.31 Aligned_cols=115 Identities=16% Similarity=0.232 Sum_probs=76.8
Q ss_pred ccceEEEeCCCCeEEEEEeCcCC----------------CccceEEEEECCCCc-----EEEEEec-CC-CC--------
Q 020019 98 GSLGLVLDHPRNRLLVVAADVFG----------------NKYSAVAAYDLSTWN-----RLFLTQL-SG-PS-------- 146 (332)
Q Consensus 98 ~~~gi~vd~~~g~l~v~~~~~~~----------------~~~~~l~~~d~~~g~-----~~~~~~l-~~-~~-------- 146 (332)
.|.++.+++.++.+|++...... +..+.|++|+++.+. ..+.+-+ .+ |.
T Consensus 385 RpEgi~~~p~~g~vY~a~Tn~~~rg~~~~~~~~~np~~~n~~G~I~r~~~~~~d~~a~~f~w~~~v~~g~p~~~~~~~~~ 464 (592)
T 3zwu_A 385 RPEWIVVSPKDGQVYCTLTNNAKRGEDGQPVGGPNPREKNVYGQILRWRTDRDDHASKTFAWDLFVVAGNPSVHAGTPKG 464 (592)
T ss_dssp CEEEEEECTTTCCEEEEECCBTTTTSTTCCCBTTBCCSSBSSCEEEEEEEGGGCTTCSEEEEEEEEECCCTTTSTTSGGG
T ss_pred ccceeEEcCCCCEEEEEecCCcccccCcccccccccccCCcceeEEEEecCCCccccceeEEEEEEeccCcccccccccc
Confidence 47899999877999999764221 234679999865432 2221111 10 10
Q ss_pred --------CCCCCccceEECCCCcEEEEeC------------CCCeEEEEcCC-CceEEEecCCCCCCcccccCccccCe
Q 020019 147 --------DGKSCADDVTVDAEGNAYVTDV------------TGSKIWKVGVK-GEFLSIISSPLFTPKEWYKNLVGLNG 205 (332)
Q Consensus 147 --------~~~~~~ndiavd~dG~lyvtd~------------~~~~I~~v~~~-g~~~~~~~~~~~~~p~~~~~~~~~nG 205 (332)
.....|..|++|++|+|||.+- .++.++..+++ |++.+++..+. ..-..|
T Consensus 465 ~~~~~~~~~~f~~PDNL~fd~~G~LwI~eDg~~~~~~~~~~~gnn~~~~~~~~~g~~~rf~~~P~---------gaE~TG 535 (592)
T 3zwu_A 465 GSSNITPQNMFNSPDGLGFDKAGRLWILTDGDSSNAGDFAGMGNNQMLCADPATGEIRRFMVGPI---------GCEVTG 535 (592)
T ss_dssp CCTTCCTTTCCCCEEEEEECTTCCEEEEECCCCCCSGGGTTTCSCEEEEECTTTCCEEEEEECCT---------TCEEEE
T ss_pred cccccCCCCCccCCcceEECCCCCEEEEecCCCcccccccccccceEEEEeCCCCeEEEEEeCCC---------CccCcC
Confidence 1135789999999999998643 24678888876 78877775442 234679
Q ss_pred EEEccCc-eEEEEeCCC
Q 020019 206 IVYHPDG-FLIVIHTFS 221 (332)
Q Consensus 206 i~~~~dG-~Lyva~~~~ 221 (332)
++|+||| +|||+-+.-
T Consensus 536 ~~fspDg~tlfvniQHP 552 (592)
T 3zwu_A 536 ISFSPDQKTLFVGIQHP 552 (592)
T ss_dssp EEECTTSSEEEEEEEST
T ss_pred eeECCCCCEEEEEEECC
Confidence 9999999 999875543
|
| >2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A* | Back alignment and structure |
|---|
Probab=97.37 E-value=0.093 Score=52.34 Aligned_cols=155 Identities=10% Similarity=0.096 Sum_probs=86.4
Q ss_pred CCCCEEE-EEec----CCeEEEEECCCCCCCccceeeeEEecccCcC--CC-ccceEEEeCCCCe-EEEEEeCcCCCccc
Q 020019 54 DSGRRFI-VSFL----DGGIGQVAVPDDYPPGTVLEEVTLVKDLELT--GN-GSLGLVLDHPRNR-LLVVAADVFGNKYS 124 (332)
Q Consensus 54 ~~g~~~~-~~~~----~g~I~~vd~~~~~~~~~~~~~~~~~~~~~~~--~~-~~~gi~vd~~~g~-l~v~~~~~~~~~~~ 124 (332)
++|+.++ .... .+.|++++..+++. + .++....+. +. ...++++.|+ |+ |.++....+ ....
T Consensus 81 ~dG~~~~~~~~~~~~~~~~l~~~~~~~~~~-----~--~lld~~~l~~~~~~~~~~~~~SPD-g~~la~~~~~~G-~~~~ 151 (710)
T 2xdw_A 81 KKGKRYFYFYNTGLQNQRVLYVQDSLEGEA-----R--VFLDPNILSDDGTVALRGYAFSED-GEYFAYGLSASG-SDWV 151 (710)
T ss_dssp EETTEEEEEEECSSCSSCEEEEESSTTSCC-----E--EEECGGGGCTTSCEEEEEEEECTT-SSEEEEEEEETT-CSCE
T ss_pred EECCEEEEEEEcCCceEEEEEEEcCCCCCc-----E--EEECHHHhccCCCEEEEEEEECCC-CCEEEEEEcCCC-CceE
Confidence 6676544 3322 23689988665542 2 333211111 11 3567899997 65 333332211 1223
Q ss_pred eEEEEECCCCcEEEEEecCCCCCCCCCccceEECCCCc-EEEEeCC---------------CCeEEEEcCCCce---EEE
Q 020019 125 AVAAYDLSTWNRLFLTQLSGPSDGKSCADDVTVDAEGN-AYVTDVT---------------GSKIWKVGVKGEF---LSI 185 (332)
Q Consensus 125 ~l~~~d~~~g~~~~~~~l~~~~~~~~~~ndiavd~dG~-lyvtd~~---------------~~~I~~v~~~g~~---~~~ 185 (332)
.|+++|+++|+.... .+. .....++++.|||+ ||++... ...|++++..+.. ..+
T Consensus 152 ~i~v~d~~tg~~~~~-~~~-----~~~~~~~~wspDg~~l~~~~~~~~~~~~~~~~~~~~~~~~v~~~~l~t~~~~~~~v 225 (710)
T 2xdw_A 152 TIKFMKVDGAKELPD-VLE-----RVKFSCMAWTHDGKGMFYNAYPQQDGKSDGTETSTNLHQKLYYHVLGTDQSEDILC 225 (710)
T ss_dssp EEEEEETTTTEEEEE-EEE-----EECSCCEEECTTSSEEEEEECCCCSSCCSSSCCCCCCCCEEEEEETTSCGGGCEEE
T ss_pred EEEEEECCCCCCCcc-ccc-----CcccceEEEEeCCCEEEEEEECCccccccccccccCCCCEEEEEECCCCcccceEE
Confidence 799999999887543 221 11245799999986 6665432 2348888765321 222
Q ss_pred ecCCCCCCcccccCccccCeEEEccCc-eEEEEeC-C---CCeEEEEeCCC
Q 020019 186 ISSPLFTPKEWYKNLVGLNGIVYHPDG-FLIVIHT-F---SGNLFKIDIVD 231 (332)
Q Consensus 186 ~~~~~~~~p~~~~~~~~~nGi~~~~dG-~Lyva~~-~---~~~i~~id~~~ 231 (332)
..... ......+++++||| +|+++.. . .+.|+.+++++
T Consensus 226 ~~~~~--------~~~~~~~~~~SpDg~~l~~~~~~~~~~~~~l~~~d~~~ 268 (710)
T 2xdw_A 226 AEFPD--------EPKWMGGAELSDDGRYVLLSIREGCDPVNRLWYCDLQQ 268 (710)
T ss_dssp ECCTT--------CTTCEEEEEECTTSCEEEEEEECSSSSCCEEEEEEGGG
T ss_pred eccCC--------CCeEEEEEEEcCCCCEEEEEEEccCCCccEEEEEECcc
Confidence 22110 01123588999999 7776654 2 56899999876
|
| >1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP: b.70.1.1 PDB: 1h4i_A* 1h4j_A* 2d0v_A* 1lrw_A* | Back alignment and structure |
|---|
Probab=97.34 E-value=0.09 Score=51.75 Aligned_cols=51 Identities=14% Similarity=0.148 Sum_probs=34.8
Q ss_pred cCceEEEEeCCCCeEEEEeCCCCCCccceeEEEEecCCCCCCCCeEEEeCCCeEEEEe
Q 020019 210 PDGFLIVIHTFSGNLFKIDIVDGVGEGEEIKLIRVAGGPLSFGDGLELLSPTKLVVAG 267 (332)
Q Consensus 210 ~dG~Lyva~~~~~~i~~id~~~~~~~~~~~~~v~~~g~~~~~pdGi~~~~dG~l~va~ 267 (332)
.+|.+|++. ..+.|+.+|.++++ .+-..+++......| |.+..+|++||+.
T Consensus 483 agg~vf~gt-~dg~l~A~D~~tG~----~lW~~~l~~g~~~~P--~~y~~~G~qyv~~ 533 (599)
T 1w6s_A 483 AGDLVFYGT-LDGYLKARDSDTGD----LLWKFKIPSGAIGYP--MTYTHKGTQYVAI 533 (599)
T ss_dssp TTTEEEEEC-TTSEEEEEETTTCC----EEEEEECSSCCCSCC--EEEEETTEEEEEE
T ss_pred cCCEEEEEC-CCCeEEEEECCCCC----EEEEeeCCCCcEecc--EEEEeCCEEEEEE
Confidence 456888864 57889999999883 455555552223344 6666789999885
|
| >3zwu_A Alkaline phosphatase PHOX; hydrolase, beta-propeller, iron; 1.39A {Pseudomonas fluorescens} | Back alignment and structure |
|---|
Probab=97.30 E-value=0.0026 Score=62.36 Aligned_cols=111 Identities=16% Similarity=0.206 Sum_probs=71.6
Q ss_pred CCccceEECC-CCcEEEEeCC---------------------CCeEEEEcCCCc-----eEE---E--ecCCCCCC--cc
Q 020019 150 SCADDVTVDA-EGNAYVTDVT---------------------GSKIWKVGVKGE-----FLS---I--ISSPLFTP--KE 195 (332)
Q Consensus 150 ~~~ndiavd~-dG~lyvtd~~---------------------~~~I~~v~~~g~-----~~~---~--~~~~~~~~--p~ 195 (332)
.+|-|+.++| +|.+|++.+. .|+|+++++++. ... + ..++.... +.
T Consensus 384 ~RpEgi~~~p~~g~vY~a~Tn~~~rg~~~~~~~~~np~~~n~~G~I~r~~~~~~d~~a~~f~w~~~v~~g~p~~~~~~~~ 463 (592)
T 3zwu_A 384 DRPEWIVVSPKDGQVYCTLTNNAKRGEDGQPVGGPNPREKNVYGQILRWRTDRDDHASKTFAWDLFVVAGNPSVHAGTPK 463 (592)
T ss_dssp ECEEEEEECTTTCCEEEEECCBTTTTSTTCCCBTTBCCSSBSSCEEEEEEEGGGCTTCSEEEEEEEEECCCTTTSTTSGG
T ss_pred eccceeEEcCCCCEEEEEecCCcccccCcccccccccccCCcceeEEEEecCCCccccceeEEEEEEeccCccccccccc
Confidence 5788999998 5899998652 378999986521 111 1 11111100 00
Q ss_pred -------cccCccccCeEEEccCceEEEEeCC------------CCeEEEEeCCCCCCccceeEEEEecCCCCCCCCeEE
Q 020019 196 -------WYKNLVGLNGIVYHPDGFLIVIHTF------------SGNLFKIDIVDGVGEGEEIKLIRVAGGPLSFGDGLE 256 (332)
Q Consensus 196 -------~~~~~~~~nGi~~~~dG~Lyva~~~------------~~~i~~id~~~~~~~~~~~~~v~~~g~~~~~pdGi~ 256 (332)
....+..|++|+|+++|.|||++-. ++.++.+++.++ .++.+... ..-....|++
T Consensus 464 ~~~~~~~~~~~f~~PDNL~fd~~G~LwI~eDg~~~~~~~~~~~gnn~~~~~~~~~g-----~~~rf~~~-P~gaE~TG~~ 537 (592)
T 3zwu_A 464 GGSSNITPQNMFNSPDGLGFDKAGRLWILTDGDSSNAGDFAGMGNNQMLCADPATG-----EIRRFMVG-PIGCEVTGIS 537 (592)
T ss_dssp GCCTTCCTTTCCCCEEEEEECTTCCEEEEECCCCCCSGGGTTTCSCEEEEECTTTC-----CEEEEEEC-CTTCEEEEEE
T ss_pred ccccccCCCCCccCCcceEECCCCCEEEEecCCCcccccccccccceEEEEeCCCC-----eEEEEEeC-CCCccCcCee
Confidence 0123668999999999999998764 356788888777 45555432 1224577999
Q ss_pred EeCCCe-EEEE
Q 020019 257 LLSPTK-LVVA 266 (332)
Q Consensus 257 ~~~dG~-l~va 266 (332)
+.+||+ |||.
T Consensus 538 fspDg~tlfvn 548 (592)
T 3zwu_A 538 FSPDQKTLFVG 548 (592)
T ss_dssp ECTTSSEEEEE
T ss_pred ECCCCCEEEEE
Confidence 999965 7776
|
| >2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus} | Back alignment and structure |
|---|
Probab=97.25 E-value=0.078 Score=52.80 Aligned_cols=192 Identities=8% Similarity=-0.010 Sum_probs=103.8
Q ss_pred ccceEEcCCCCEEEEE-ecC----CeEEEEECCCCCCCccceeeeEEecccCcCCCccceEEEeCCCCeEEEEEeCcCC-
Q 020019 47 RECAKWDDSGRRFIVS-FLD----GGIGQVAVPDDYPPGTVLEEVTLVKDLELTGNGSLGLVLDHPRNRLLVVAADVFG- 120 (332)
Q Consensus 47 pegia~d~~g~~~~~~-~~~----g~I~~vd~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~vd~~~g~l~v~~~~~~~- 120 (332)
..+++++|||+.+... ... ..|+.++..+++. .... ...+....+++..++...|+.+..+...
T Consensus 123 ~~~~~~SPDG~~la~~~~~~G~~~~~i~v~dl~tg~~---------~~~~-~~~~~~~~~~~wspDg~~l~~~~~d~~~~ 192 (695)
T 2bkl_A 123 LGTWAVSWDGKKVAFAQKPNAADEAVLHVIDVDSGEW---------SKVD-VIEGGKYATPKWTPDSKGFYYEWLPTDPS 192 (695)
T ss_dssp EEEEEECTTSSEEEEEEEETTCSCCEEEEEETTTCCB---------CSSC-CBSCCTTCCCEECTTSSEEEEEECCCCTT
T ss_pred EEEEEECCCCCEEEEEECCCCCceEEEEEEECCCCCC---------cCCc-ccCcccccceEEecCCCEEEEEEecCCCC
Confidence 4578999999966533 223 4799999987762 1000 0111112578899973345555443210
Q ss_pred ------CccceEEEEECCCCcE--EEEEecCCCCCCCCCccceEECCCCc-EEEEeC---CCCeEEEEcCC-CceEEEec
Q 020019 121 ------NKYSAVAAYDLSTWNR--LFLTQLSGPSDGKSCADDVTVDAEGN-AYVTDV---TGSKIWKVGVK-GEFLSIIS 187 (332)
Q Consensus 121 ------~~~~~l~~~d~~~g~~--~~~~~l~~~~~~~~~~ndiavd~dG~-lyvtd~---~~~~I~~v~~~-g~~~~~~~ 187 (332)
.....|+++++.+++. ....... .......++++++||+ |+++.. ....||.++.. ++...+..
T Consensus 193 ~~~~~~~~~~~v~~~~l~t~~~~~~lv~~~~---~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~l~~~~~~~~~~~~l~~ 269 (695)
T 2bkl_A 193 IKVDERPGYTTIRYHTLGTEPSKDTVVHERT---GDPTTFLQSDLSRDGKYLFVYILRGWSENDVYWKRPGEKDFRLLVK 269 (695)
T ss_dssp SCGGGGGGGCEEEEEETTSCGGGCEEEECCC---CCTTCEEEEEECTTSCCEEEEEEETTTEEEEEEECTTCSSCEEEEE
T ss_pred CccccCCCCCEEEEEECCCCchhceEEEecC---CCCEEEEEEEECCCCCEEEEEEeCCCCceEEEEEcCCCCceEEeec
Confidence 1234699999987762 2222221 1123456789999996 554432 23478888764 44444332
Q ss_pred CCCCCCcccccCccccCeEEEccCceEEEEeC---CCCeEEEEeCCCCCCccceeEEEEecCCCCCCCCeEEEeCCCeEE
Q 020019 188 SPLFTPKEWYKNLVGLNGIVYHPDGFLIVIHT---FSGNLFKIDIVDGVGEGEEIKLIRVAGGPLSFGDGLELLSPTKLV 264 (332)
Q Consensus 188 ~~~~~~p~~~~~~~~~nGi~~~~dG~Lyva~~---~~~~i~~id~~~~~~~~~~~~~v~~~g~~~~~pdGi~~~~dG~l~ 264 (332)
.. .......+ ++|.+|+... .+++|++++++++.. ...+.+... .+-....++++. ++.|+
T Consensus 270 ~~-----------~~~~~~~~-~~g~l~~~s~~~~~~~~l~~~d~~~~~~--~~~~~l~~~-~~~~~l~~~~~~-~~~lv 333 (695)
T 2bkl_A 270 GV-----------GAKYEVHA-WKDRFYVLTDEGAPRQRVFEVDPAKPAR--ASWKEIVPE-DSSASLLSVSIV-GGHLS 333 (695)
T ss_dssp CS-----------SCCEEEEE-ETTEEEEEECTTCTTCEEEEEBTTBCSG--GGCEEEECC-CSSCEEEEEEEE-TTEEE
T ss_pred CC-----------CceEEEEe-cCCcEEEEECCCCCCCEEEEEeCCCCCc--cCCeEEecC-CCCCeEEEEEEE-CCEEE
Confidence 11 11123344 4554666544 357899999986521 012323222 111234567777 67777
Q ss_pred EEe
Q 020019 265 VAG 267 (332)
Q Consensus 265 va~ 267 (332)
++.
T Consensus 334 ~~~ 336 (695)
T 2bkl_A 334 LEY 336 (695)
T ss_dssp EEE
T ss_pred EEE
Confidence 774
|
| >2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B* | Back alignment and structure |
|---|
Probab=97.16 E-value=0.15 Score=47.20 Aligned_cols=182 Identities=14% Similarity=0.117 Sum_probs=105.5
Q ss_pred EcCCCCEEEEEecCCeEEEEECCCCCCCccceeeeEEecccCcCCCccceEEEeCCCCeEEEEEeCcCCCccceEEEEEC
Q 020019 52 WDDSGRRFIVSFLDGGIGQVAVPDDYPPGTVLEEVTLVKDLELTGNGSLGLVLDHPRNRLLVVAADVFGNKYSAVAAYDL 131 (332)
Q Consensus 52 ~d~~g~~~~~~~~~g~I~~vd~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~vd~~~g~l~v~~~~~~~~~~~~l~~~d~ 131 (332)
+..+|+.+++...+|.|..++..+++. .. .+.... .....+.+++ +.++.+.. .+.+..||.
T Consensus 125 ~~~~g~~l~sg~~dg~i~vwd~~~~~~----~~--~~~~h~----~~v~~~~~~~--~~l~s~~~------dg~i~vwd~ 186 (445)
T 2ovr_B 125 LQFCGNRIVSGSDDNTLKVWSAVTGKC----LR--TLVGHT----GGVWSSQMRD--NIIISGST------DRTLKVWNA 186 (445)
T ss_dssp EEEETTEEEEEETTSCEEEEETTTCCE----EE--ECCCCS----SCEEEEEEET--TEEEEEET------TSCEEEEET
T ss_pred EEEcCCEEEEEECCCcEEEEECCCCcE----EE--EEcCCC----CCEEEEEecC--CEEEEEeC------CCeEEEEEC
Confidence 445678888777789999999877652 11 221111 2567788874 55555554 356899999
Q ss_pred CCCcEEEEEecCCCCCCCCCccceEECCCCcEEEEeCCCCeEEEEcCC-CceEEEecCCCCCCcccccCccccCeEEEcc
Q 020019 132 STWNRLFLTQLSGPSDGKSCADDVTVDAEGNAYVTDVTGSKIWKVGVK-GEFLSIISSPLFTPKEWYKNLVGLNGIVYHP 210 (332)
Q Consensus 132 ~~g~~~~~~~l~~~~~~~~~~ndiavd~dG~lyvtd~~~~~I~~v~~~-g~~~~~~~~~~~~~p~~~~~~~~~nGi~~~~ 210 (332)
++++......- . ......++++ ++.+++-+..+.|..++.. ++....+... ......+.+
T Consensus 187 ~~~~~~~~~~~--h---~~~v~~~~~~--~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~----------~~~v~~~~~-- 247 (445)
T 2ovr_B 187 ETGECIHTLYG--H---TSTVRCMHLH--EKRVVSGSRDATLRVWDIETGQCLHVLMGH----------VAAVRCVQY-- 247 (445)
T ss_dssp TTTEEEEEECC--C---SSCEEEEEEE--TTEEEEEETTSEEEEEESSSCCEEEEEECC----------SSCEEEEEE--
T ss_pred CcCcEEEEECC--C---CCcEEEEEec--CCEEEEEeCCCEEEEEECCCCcEEEEEcCC----------cccEEEEEE--
Confidence 98876654331 1 2345566664 4567777778888888865 4444333211 122356666
Q ss_pred CceEEEEeCCCCeEEEEeCCCCCCccceeEEEEecCCCCCCCCeEEEeCCCeEEEE-eC-CceEEEEcCCC
Q 020019 211 DGFLIVIHTFSGNLFKIDIVDGVGEGEEIKLIRVAGGPLSFGDGLELLSPTKLVVA-GN-PSARLVESSDG 279 (332)
Q Consensus 211 dG~Lyva~~~~~~i~~id~~~~~~~~~~~~~v~~~g~~~~~pdGi~~~~dG~l~va-~~-~~~~~v~~~dg 279 (332)
+|..+++-...+.|..+++.++ +.+..+.. .......+.+ +++.+++ .. +..++....++
T Consensus 248 ~~~~l~~~~~dg~i~iwd~~~~----~~~~~~~~---~~~~v~~~~~--~~~~l~~~~~d~~i~i~d~~~~ 309 (445)
T 2ovr_B 248 DGRRVVSGAYDFMVKVWDPETE----TCLHTLQG---HTNRVYSLQF--DGIHVVSGSLDTSIRVWDVETG 309 (445)
T ss_dssp CSSCEEEEETTSCEEEEEGGGT----EEEEEECC---CSSCEEEEEE--CSSEEEEEETTSCEEEEETTTC
T ss_pred CCCEEEEEcCCCEEEEEECCCC----cEeEEecC---CCCceEEEEE--CCCEEEEEeCCCeEEEEECCCC
Confidence 5634444456778988998866 23433331 2233445666 4444444 43 33444455555
|
| >4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A | Back alignment and structure |
|---|
Probab=97.15 E-value=0.078 Score=48.71 Aligned_cols=201 Identities=11% Similarity=-0.005 Sum_probs=105.3
Q ss_pred cccceEEcC--------CCCEEEEEecCCeEEEEECCCCCCCccceeeeEEecccCcCCCccceEEEeCCCCeEEEEEeC
Q 020019 46 FRECAKWDD--------SGRRFIVSFLDGGIGQVAVPDDYPPGTVLEEVTLVKDLELTGNGSLGLVLDHPRNRLLVVAAD 117 (332)
Q Consensus 46 ~pegia~d~--------~g~~~~~~~~~g~I~~vd~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~vd~~~g~l~v~~~~ 117 (332)
....++|.| +|+++.+...+++|..+|..++.. ...+.... ..+..++++|++.+++++..
T Consensus 138 ~v~~v~~~p~~~~~~~~d~~~las~s~D~tv~~Wd~~~~~~------~~~~~~~~----~~v~~v~~~p~~~~~l~~~~- 206 (393)
T 4gq1_A 138 FVNDIDIADVYSADNRLAEQVIASVGDDCTLIIWRLTDEGP------ILAGYPLS----SPGISVQFRPSNPNQLIVGE- 206 (393)
T ss_dssp CEEEEEEEEEECTTCSEEEEEEEEEETTSEEEEEEEETTEE------EEEEEECS----SCEEEEEEETTEEEEEEEEE-
T ss_pred ceEEEEEccccccccCCCCCEEEEEECCCeEEEEECCCCce------eeeecCCC----CCcEEEEECCCCCceEEecC-
Confidence 345688876 777777777889999998765431 11222111 24678999996334444432
Q ss_pred cCCCccceEEEEECCCCcEEEEEec-CCC-------------------CCCCCCccceEEC-CCCcEEEEeCCCCeEEEE
Q 020019 118 VFGNKYSAVAAYDLSTWNRLFLTQL-SGP-------------------SDGKSCADDVTVD-AEGNAYVTDVTGSKIWKV 176 (332)
Q Consensus 118 ~~~~~~~~l~~~d~~~g~~~~~~~l-~~~-------------------~~~~~~~ndiavd-~dG~lyvtd~~~~~I~~v 176 (332)
..+.+..||.++++......- ... .........+++. ++|+..++-...+.+...
T Consensus 207 ----~d~~v~~wd~~t~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~v~~v~~~~~dg~~l~s~s~d~~i~vw 282 (393)
T 4gq1_A 207 ----RNGNIRIFDWTLNLSAEENSQTELVKNPWLLTLNTLPLVNTCHSSGIASSLANVRWIGSDGSGILAMCKSGAWLRW 282 (393)
T ss_dssp ----TTSEEEEEETTCCC----------CSCCCSEEEESGGGC------CCSSSCSEEEEETTTTCEEEEECTTSEEEEE
T ss_pred ----CCCEEEEEECCCCcccccccccCCcccceEEecccccceeeeecccccccceeeeeecCCCCEEEEEeCCCCEEEE
Confidence 245688999988764322110 000 0001223445554 678877777777777776
Q ss_pred cCC-CceEEEecC-------CCCCCcc-cccCccccCeEEEccC-c-eEEEEeCCCCeEEEEeCCCCCCccceeEEEEec
Q 020019 177 GVK-GEFLSIISS-------PLFTPKE-WYKNLVGLNGIVYHPD-G-FLIVIHTFSGNLFKIDIVDGVGEGEEIKLIRVA 245 (332)
Q Consensus 177 ~~~-g~~~~~~~~-------~~~~~p~-~~~~~~~~nGi~~~~d-G-~Lyva~~~~~~i~~id~~~~~~~~~~~~~v~~~ 245 (332)
+.. ++....+.. ..+.... .........+.++.+. + .+.++-...++|..++..++. ........
T Consensus 283 d~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sgs~Dg~V~lwd~~~~~----~~~~~~~~ 358 (393)
T 4gq1_A 283 NLFANNDYNEISDSTMKLGPKNLLPNVQGISLFPSLLGACPHPRYMDYFATAHSQHGLIQLINTYEKD----SNSIPIQL 358 (393)
T ss_dssp EC-------------------CCSCSEEEECSSCCSSCCEECSSCTTEEEEEETTTTEEEEEETTCTT----CCEEEEEC
T ss_pred ECccCCCCceEeeecCccccEEEccccccccccCcceeEEEccCCCCEEEEEECCCCEEEEEECCCCc----EEEEecCC
Confidence 654 221111000 0000000 0111223344555554 3 555666778899999988763 22222211
Q ss_pred CCCCCCCCeEEEeCCCeEEEEeC
Q 020019 246 GGPLSFGDGLELLSPTKLVVAGN 268 (332)
Q Consensus 246 g~~~~~pdGi~~~~dG~l~va~~ 268 (332)
......+++.|||+++++..
T Consensus 359 ---~~~V~svafspdG~~LA~as 378 (393)
T 4gq1_A 359 ---GMPIVDFCWHQDGSHLAIAT 378 (393)
T ss_dssp ---SSCEEEEEECTTSSEEEEEE
T ss_pred ---CCcEEEEEEcCCCCEEEEEe
Confidence 12356899999999777753
|
| >3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A | Back alignment and structure |
|---|
Probab=97.04 E-value=0.087 Score=46.69 Aligned_cols=195 Identities=8% Similarity=-0.038 Sum_probs=106.9
Q ss_pred cccceEEcC--CCCEEEEEecCCeEEEEECCCCCCCccceeeeEEecccCcCCCccceEEEeCCC-CeEEEEEeCcCCCc
Q 020019 46 FRECAKWDD--SGRRFIVSFLDGGIGQVAVPDDYPPGTVLEEVTLVKDLELTGNGSLGLVLDHPR-NRLLVVAADVFGNK 122 (332)
Q Consensus 46 ~pegia~d~--~g~~~~~~~~~g~I~~vd~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~vd~~~-g~l~v~~~~~~~~~ 122 (332)
....+++.+ +++++++...++.|..++..+++.. ....+.... ..+..++++|+. +.++++...
T Consensus 59 ~V~~v~~~~~~~~~~l~s~s~D~~v~iWd~~~~~~~----~~~~~~~h~----~~V~~v~~~p~~~g~~lasgs~----- 125 (316)
T 3bg1_A 59 PVWQVAWAHPMYGNILASCSYDRKVIIWREENGTWE----KSHEHAGHD----SSVNSVCWAPHDYGLILACGSS----- 125 (316)
T ss_dssp CEEEEEECCGGGSSCEEEEETTSCEEEECCSSSCCC----EEEEECCCS----SCCCEEEECCTTTCSCEEEECS-----
T ss_pred cEEEEEeCCCCCCCEEEEEECCCEEEEEECCCCcce----EEEEccCCC----CceEEEEECCCCCCcEEEEEcC-----
Confidence 445678865 4787777777899999998765421 100121111 256889998852 554444332
Q ss_pred cceEEEEECCCCcEEE-EEecCCCCCCCCCccceEECCC-----------------CcEEEEeCCCCeEEEEcCC--Cce
Q 020019 123 YSAVAAYDLSTWNRLF-LTQLSGPSDGKSCADDVTVDAE-----------------GNAYVTDVTGSKIWKVGVK--GEF 182 (332)
Q Consensus 123 ~~~l~~~d~~~g~~~~-~~~l~~~~~~~~~~ndiavd~d-----------------G~lyvtd~~~~~I~~v~~~--g~~ 182 (332)
.+.+..||.+++.... ...+.+ .....+.+++.|+ ++.+++-+..+.|...+.. ++.
T Consensus 126 D~~i~lwd~~~~~~~~~~~~~~~---h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sgs~D~~v~lWd~~~~~~~ 202 (316)
T 3bg1_A 126 DGAISLLTYTGEGQWEVKKINNA---HTIGCNAVSWAPAVVPGSLIDHPSGQKPNYIKRFASGGCDNLIKLWKEEEDGQW 202 (316)
T ss_dssp SSCEEEEEECSSSCEEECCBTTS---SSSCBCCCEECCCCCC------CCSCCCCCCCBEECCBTTSBCCEEEECTTSCE
T ss_pred CCCEEEEecCCCCCcceeeeecc---ccCCcceEEEccccCCccccccccccCccccceEEEecCCCeEEEEEeCCCCcc
Confidence 3568889987653221 112211 1234556777765 3566666666655555443 221
Q ss_pred EEEecCCCCCCcccccCccccCeEEEccCc----eEEEEeCCCCeEEEEeCCCCCCccceeEEEEecCCCCCCCCeEEEe
Q 020019 183 LSIISSPLFTPKEWYKNLVGLNGIVYHPDG----FLIVIHTFSGNLFKIDIVDGVGEGEEIKLIRVAGGPLSFGDGLELL 258 (332)
Q Consensus 183 ~~~~~~~~~~~p~~~~~~~~~nGi~~~~dG----~Lyva~~~~~~i~~id~~~~~~~~~~~~~v~~~g~~~~~pdGi~~~ 258 (332)
.... .+. ......+.++|+|++ .++++-...++|..+++++........+.+.. .......+++.
T Consensus 203 ~~~~---~l~-----~h~~~V~~v~~sp~~~~~~~~las~s~D~~v~iw~~~~~~~~~~~~~~~~~---~~~~v~~v~~s 271 (316)
T 3bg1_A 203 KEEQ---KLE-----AHSDWVRDVAWAPSIGLPTSTIASCSQDGRVFIWTCDDASSNTWSPKLLHK---FNDVVWHVSWS 271 (316)
T ss_dssp EEEE---CCB-----CCSSCEEEEECCCCSSCSCCEEEEEETTCEEEEEECSSTTCCCCBCCEEEE---CSSCEEEEEEC
T ss_pred ceee---ecc-----cCCCceEEEEecCCCCCCCceEEEEcCCCeEEEEEccCccccchhhhhhhc---CCCcEEEEEEc
Confidence 1111 111 011235789999986 66777777888888887652100001111221 11345678899
Q ss_pred CCCeEEEEe
Q 020019 259 SPTKLVVAG 267 (332)
Q Consensus 259 ~dG~l~va~ 267 (332)
++|+++++.
T Consensus 272 p~g~~las~ 280 (316)
T 3bg1_A 272 ITANILAVS 280 (316)
T ss_dssp TTTCCEEEE
T ss_pred CCCCEEEEE
Confidence 998877664
|
| >2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=97.04 E-value=0.16 Score=45.24 Aligned_cols=195 Identities=13% Similarity=0.108 Sum_probs=107.7
Q ss_pred ecCCccccceEEcCCCCEEEEEecCCeEEEEECCCCCCCccceeeeEEecccCcCCCccceEEEeCCCCeEEEEEeCcCC
Q 020019 41 HSSSFFRECAKWDDSGRRFIVSFLDGGIGQVAVPDDYPPGTVLEEVTLVKDLELTGNGSLGLVLDHPRNRLLVVAADVFG 120 (332)
Q Consensus 41 ~~~~~~pegia~d~~g~~~~~~~~~g~I~~vd~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~vd~~~g~l~v~~~~~~~ 120 (332)
.+.......++++++ ++++...++.|..++..++.. .....+.. +.-......++++|+ +.++++...
T Consensus 11 ~~h~~~v~~~~~s~~--~las~~~D~~i~lw~~~~~~~-----~~~~~~~~-~~h~~~v~~v~~sp~-~~~las~s~--- 78 (330)
T 2hes_X 11 KLYKEKIWSFDFSQG--ILATGSTDRKIKLVSVKYDDF-----TLIDVLDE-TAHKKAIRSVAWRPH-TSLLAAGSF--- 78 (330)
T ss_dssp ECCSSCEEEEEEETT--EEEEEESSSCEEEEECSSSCC-----EEEEEECT-TCCCSCEEEEEECTT-SSEEEEEET---
T ss_pred ccCCCceeeeccCCC--EEEEEcCCCEEEEEEecCCCe-----EEEEEEec-CCccCCEEEEEECCC-CCEEEEEeC---
Confidence 333334456778776 555557789999998765432 10112211 101125788999997 665554432
Q ss_pred CccceEEEEECCCCc-----EEEEEecCCCCCCCCCccceEECCCCcEEEEeCCCCeEEEEcCC--Cc---eEEEecCCC
Q 020019 121 NKYSAVAAYDLSTWN-----RLFLTQLSGPSDGKSCADDVTVDAEGNAYVTDVTGSKIWKVGVK--GE---FLSIISSPL 190 (332)
Q Consensus 121 ~~~~~l~~~d~~~g~-----~~~~~~l~~~~~~~~~~ndiavd~dG~lyvtd~~~~~I~~v~~~--g~---~~~~~~~~~ 190 (332)
.+.+..||.+... ......+.+. ......+++.|+|+.+++-+..+.|...+.+ ++ ....+..
T Consensus 79 --D~~v~iw~~~~~~~~~~~~~~~~~~~~h---~~~V~~v~~sp~g~~las~s~D~~v~iwd~~~~~~~~~~~~~~~~-- 151 (330)
T 2hes_X 79 --DSTVSIWAKEESADRTFEMDLLAIIEGH---ENEVKGVAWSNDGYYLATCSRDKSVWIWETDESGEEYECISVLQE-- 151 (330)
T ss_dssp --TSCEEEEEC-------CCCEEEEEEC-------CEEEEEECTTSCEEEEEETTSCEEEEECCTTCCCCEEEEEECC--
T ss_pred --CCcEEEEEcccCcCccccceeEEEEcCC---CCcEEEEEECCCCCEEEEEeCCCEEEEEeccCCCCCeEEEEEecc--
Confidence 3568889885321 1112223211 2456789999999988888888888877763 22 1221211
Q ss_pred CCCcccccCccccCeEEEccCceEEEEeCCCCeEEEEeCCCCCCccceeEEEEecCCCCCCCCeEEEeCC--CeEEEEe
Q 020019 191 FTPKEWYKNLVGLNGIVYHPDGFLIVIHTFSGNLFKIDIVDGVGEGEEIKLIRVAGGPLSFGDGLELLSP--TKLVVAG 267 (332)
Q Consensus 191 ~~~p~~~~~~~~~nGi~~~~dG~Lyva~~~~~~i~~id~~~~~~~~~~~~~v~~~g~~~~~pdGi~~~~d--G~l~va~ 267 (332)
.....+.++|+|++.++++-...+.|..++..++.. +.+. .+.+ .......+++.++ +.++++.
T Consensus 152 --------h~~~v~~v~~~p~~~~l~s~s~D~~i~iW~~~~~~~--~~~~--~~~~-h~~~v~~~~~~~~~~~~~l~s~ 217 (330)
T 2hes_X 152 --------HSQDVKHVIWHPSEALLASSSYDDTVRIWKDYDDDW--ECVA--VLNG-HEGTVWSSDFDKTEGVFRLCSG 217 (330)
T ss_dssp --------CSSCEEEEEECSSSSEEEEEETTSCEEEEEEETTEE--EEEE--EECC-CSSCEEEEEECCSSSSCEEEEE
T ss_pred --------CCCceEEEEECCCCCEEEEEcCCCeEEEEECCCCCe--eEEE--EccC-CCCcEEEEEecCCCCeeEEEEE
Confidence 112357899999996666666677776666554310 1122 2221 2234567788877 5555553
|
| >2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A | Back alignment and structure |
|---|
Probab=97.00 E-value=0.014 Score=55.00 Aligned_cols=169 Identities=11% Similarity=0.043 Sum_probs=97.3
Q ss_pred cccceEEcCCCCEEEE---E-ecCCeEEEEECCCC-----CCCccceeeeEEecccCcCCCccceEEEeCCCCeEEEEEe
Q 020019 46 FRECAKWDDSGRRFIV---S-FLDGGIGQVAVPDD-----YPPGTVLEEVTLVKDLELTGNGSLGLVLDHPRNRLLVVAA 116 (332)
Q Consensus 46 ~pegia~d~~g~~~~~---~-~~~g~I~~vd~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~gi~vd~~~g~l~v~~~ 116 (332)
....++|+++|+.+++ + ..++.|..+|..+. +.. .... .+....+ -...+.+++++++.+.++++..
T Consensus 94 ~v~~l~~spdg~~lav~~~sgs~d~~v~iwd~~~~~~~~~~~~-~~~~--~~~~~~~-h~~~V~~v~~~p~~~~~las~s 169 (434)
T 2oit_A 94 PIHHLALSCDNLTLSACMMSSEYGSIIAFFDVRTFSNEAKQQK-RPFA--YHKLLKD-AGGMVIDMKWNPTVPSMVAVCL 169 (434)
T ss_dssp CEEEEEECTTSCEEEEEEEETTTEEEEEEEEHHHHHCTTCSSC-CCSE--EEECCCS-GGGSEEEEEECSSCTTEEEEEE
T ss_pred cccEEEEcCCCCEEEEEEeccCCCceEEEEEccccccCCcCCc-ceee--eeeccCC-CCCceEEEEECCCCCCEEEEEE
Confidence 4678999999998774 3 45678888886533 100 0001 1110000 0125789999996456555443
Q ss_pred CcCCCccceEEEEECCCCcEEEEEecCCCCCCCCCccceEECCCCcEEEEeCCCCeEEEEcCCCceEEEecCCCCCCccc
Q 020019 117 DVFGNKYSAVAAYDLSTWNRLFLTQLSGPSDGKSCADDVTVDAEGNAYVTDVTGSKIWKVGVKGEFLSIISSPLFTPKEW 196 (332)
Q Consensus 117 ~~~~~~~~~l~~~d~~~g~~~~~~~l~~~~~~~~~~ndiavd~dG~lyvtd~~~~~I~~v~~~g~~~~~~~~~~~~~p~~ 196 (332)
. .+.|..||.++++..... . + .......+++.|+|+.+++-+..+.|..++.+++....+..+....+
T Consensus 170 ~-----Dg~v~iwD~~~~~~~~~~-~-~---~~~~v~~v~wspdg~~lasgs~dg~v~iwd~~~~~~~~~~~~~~~~~-- 237 (434)
T 2oit_A 170 A-----DGSIAVLQVTETVKVCAT-L-P---STVAVTSVCWSPKGKQLAVGKQNGTVVQYLPTLQEKKVIPCPPFYES-- 237 (434)
T ss_dssp T-----TSCEEEEEESSSEEEEEE-E-C---GGGCEEEEEECTTSSCEEEEETTSCEEEECTTCCEEEEECCCTTCCT--
T ss_pred C-----CCeEEEEEcCCCcceeec-c-C---CCCceeEEEEcCCCCEEEEEcCCCcEEEEccCCcccccccCCcccCC--
Confidence 2 356899999887543221 1 0 12467889999999877776788999999988664443321110000
Q ss_pred ccCccccCeEEEccCc-eEEEEeCCCC------eEEEEeCCC
Q 020019 197 YKNLVGLNGIVYHPDG-FLIVIHTFSG------NLFKIDIVD 231 (332)
Q Consensus 197 ~~~~~~~nGi~~~~dG-~Lyva~~~~~------~i~~id~~~ 231 (332)
........|++++++ .+.+.....+ .+..+++..
T Consensus 238 -~~~~~v~~v~w~~~~~~l~~~~~~dg~~~~~~~v~i~~l~~ 278 (434)
T 2oit_A 238 -DHPVRVLDVLWIGTYVFAIVYAAADGTLETSPDVVMALLPK 278 (434)
T ss_dssp -TSCEEEEEEEEEETTEEEEEEEETTCCSSSCCEEEEEECCC
T ss_pred -CCceeEEEEEEecCceEEEEEccCCCccCCCCceEEEEecc
Confidence 011245788999888 3333333332 255566653
|
| >3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.00 E-value=0.17 Score=44.79 Aligned_cols=115 Identities=11% Similarity=0.081 Sum_probs=78.1
Q ss_pred ccceEEEeCCC--CeEEEEEeCcCCCccceEEEEECCC-CcEEEEEecCCCCCCCCCccceEECCCCcEEEEeCCCCeEE
Q 020019 98 GSLGLVLDHPR--NRLLVVAADVFGNKYSAVAAYDLST-WNRLFLTQLSGPSDGKSCADDVTVDAEGNAYVTDVTGSKIW 174 (332)
Q Consensus 98 ~~~gi~vd~~~--g~l~v~~~~~~~~~~~~l~~~d~~~-g~~~~~~~l~~~~~~~~~~ndiavd~dG~lyvtd~~~~~I~ 174 (332)
....++++++. |.++++... .+.|.+||.++ ++... ..+.+ .......+++.++|+.+++-+..+.|.
T Consensus 41 ~v~~~~~~~~~~~g~~l~~~~~-----dg~i~iw~~~~~~~~~~-~~~~~---h~~~v~~~~~~~~~~~l~s~~~dg~v~ 111 (368)
T 3mmy_A 41 SIGCLSFSPPTLPGNFLIAGSW-----ANDVRCWEVQDSGQTIP-KAQQM---HTGPVLDVCWSDDGSKVFTASCDKTAK 111 (368)
T ss_dssp CEEEEEECCTTSSSEEEEEEET-----TSEEEEEEECTTSCEEE-EEEEE---CSSCEEEEEECTTSSEEEEEETTSEEE
T ss_pred ceEEEEEcCCCCCceEEEEECC-----CCcEEEEEcCCCCceeE-EEecc---ccCCEEEEEECcCCCEEEEEcCCCcEE
Confidence 57899999964 465555432 45788999987 44432 22211 134577899999998888878889999
Q ss_pred EEcCCC-ceEEEecCCCCCCcccccCccccCeEEE--ccCceEEEEeCCCCeEEEEeCCCC
Q 020019 175 KVGVKG-EFLSIISSPLFTPKEWYKNLVGLNGIVY--HPDGFLIVIHTFSGNLFKIDIVDG 232 (332)
Q Consensus 175 ~v~~~g-~~~~~~~~~~~~~p~~~~~~~~~nGi~~--~~dG~Lyva~~~~~~i~~id~~~~ 232 (332)
.++... +....... ......+++ ++++.++++-...+.|..+++.++
T Consensus 112 iwd~~~~~~~~~~~~-----------~~~v~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~ 161 (368)
T 3mmy_A 112 MWDLSSNQAIQIAQH-----------DAPVKTIHWIKAPNYSCVMTGSWDKTLKFWDTRSS 161 (368)
T ss_dssp EEETTTTEEEEEEEC-----------SSCEEEEEEEECSSCEEEEEEETTSEEEEECSSCS
T ss_pred EEEcCCCCceeeccc-----------cCceEEEEEEeCCCCCEEEEccCCCcEEEEECCCC
Confidence 888764 33333221 123578999 899965666666788999998876
|
| >2w18_A PALB2, fancn, partner and localizer of BRCA2; fanconi anemia, homologous recomination, polymorphism, phosphoprotein, beta-propeller, WD40, nucleus; 1.90A {Homo sapiens} PDB: 3eu7_A | Back alignment and structure |
|---|
Probab=97.00 E-value=0.17 Score=46.32 Aligned_cols=159 Identities=9% Similarity=0.017 Sum_probs=88.0
Q ss_pred eEEcC---CCCEEEEEecCCeEEEEECCCCCCCccceeeeEEecccCcCCCccceEEEeCCCCeEEEEEeCc-------C
Q 020019 50 AKWDD---SGRRFIVSFLDGGIGQVAVPDDYPPGTVLEEVTLVKDLELTGNGSLGLVLDHPRNRLLVVAADV-------F 119 (332)
Q Consensus 50 ia~d~---~g~~~~~~~~~g~I~~vd~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~vd~~~g~l~v~~~~~-------~ 119 (332)
+++.+ ++.++++...++.|..+|..+++. +. ++..... .......+++.|+ |.+.++.... .
T Consensus 184 l~fs~~~g~~~~LaSgS~D~TIkIWDl~TGk~----l~--tL~g~~~-~v~~v~~vafSpd-G~~lvs~s~~~~~w~laS 255 (356)
T 2w18_A 184 LTFAEVQGMQEALLGTTIMNNIVIWNLKTGQL----LK--KMHIDDS-YQASVCHKAYSEM-GLLFIVLSHPCAKESESL 255 (356)
T ss_dssp EEEEEEETSTTEEEEEETTSEEEEEETTTCCE----EE--EEECCC----CCCEEEEEEET-TEEEEEEC----------
T ss_pred EEeeccCCCCceEEEecCCCcEEEEECCCCcE----EE--EEcCCCc-ceeeeEEEEECCC-CCEEEEeccCCCcceeec
Confidence 45555 667777778899999999998873 12 3321111 0124556788996 8766543210 0
Q ss_pred CCccceEEEEECCCCcEEEEEecCCCCCCCCCccceEECCCCcEEEEeCCCCeEEEEcCC-CceEEEecCCCCCCccccc
Q 020019 120 GNKYSAVAAYDLSTWNRLFLTQLSGPSDGKSCADDVTVDAEGNAYVTDVTGSKIWKVGVK-GEFLSIISSPLFTPKEWYK 198 (332)
Q Consensus 120 ~~~~~~l~~~d~~~g~~~~~~~l~~~~~~~~~~ndiavd~dG~lyvtd~~~~~I~~v~~~-g~~~~~~~~~~~~~p~~~~ 198 (332)
......+..||+++++......+..|....... +..+.+|.+.++-+..+.|...|.. |+....+....
T Consensus 256 Gs~D~tIklWd~~tgk~l~v~~~~~p~Gh~~~~--lsg~~sg~~lASgS~DgTIkIWDl~tGk~l~tL~gH~-------- 325 (356)
T 2w18_A 256 RSPVFQLIVINPKTTLSVGVMLYCLPPGQAGRF--LEGDVKDHCAAAILTSGTIAIWDLLLGQCTALLPPVS-------- 325 (356)
T ss_dssp --CCEEEEEEETTTTEEEEEEEECCCTTCCCCE--EEEEEETTEEEEEETTSCEEEEETTTCSEEEEECCC---------
T ss_pred cCCCcEEEEEECCCCEEEEEEEeeccCCCccee--EccccCCCEEEEEcCCCcEEEEECCCCcEEEEecCCC--------
Confidence 123456778999998876544322121101111 1222235566776667788778865 55444332110
Q ss_pred Ccccc-CeEEEccCceEEEEeCCCCeEEEEe
Q 020019 199 NLVGL-NGIVYHPDGFLIVIHTFSGNLFKID 228 (332)
Q Consensus 199 ~~~~~-nGi~~~~dG~Lyva~~~~~~i~~id 228 (332)
... ..++|+|||...++-...++|..++
T Consensus 326 --~~vvs~vafSPDG~~LaSGS~D~TIklWd 354 (356)
T 2w18_A 326 --DQHWSFVKWSGTDSHLLAGQKDGNIFVYH 354 (356)
T ss_dssp ---CCCCEEEECSSSSEEEEECTTSCEEEEE
T ss_pred --CCeEEEEEECCCCCEEEEEECCCcEEEec
Confidence 112 3589999995555556677776554
|
| >1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum} | Back alignment and structure |
|---|
Probab=96.98 E-value=0.26 Score=49.43 Aligned_cols=188 Identities=15% Similarity=0.078 Sum_probs=103.4
Q ss_pred ccceEEcCCCCEEEEE-ecCC----eEEEEECCCCCCCccceeeeEEecccCcCCCccceEEEeCCCCeEEEEEeCcCC-
Q 020019 47 RECAKWDDSGRRFIVS-FLDG----GIGQVAVPDDYPPGTVLEEVTLVKDLELTGNGSLGLVLDHPRNRLLVVAADVFG- 120 (332)
Q Consensus 47 pegia~d~~g~~~~~~-~~~g----~I~~vd~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~vd~~~g~l~v~~~~~~~- 120 (332)
..+++|+|||+.+... ...| +|+.++..+++. .. ... ++ ....+++..++ ..|+++..+...
T Consensus 165 ~~~~~~SPDG~~la~~~~~~G~e~~~i~v~dl~tg~~----~~--~~~--~~---~~~~~~~wspD-~~l~~~~~~~~~~ 232 (741)
T 1yr2_A 165 LDAWAASDDGRLLAYSVQDGGSDWRTVKFVGVADGKP----LA--DEL--KW---VKFSGLAWLGN-DALLYSRFAEPKE 232 (741)
T ss_dssp EEEEEECTTSSEEEEEEEETTCSEEEEEEEETTTCCE----EE--EEE--EE---EESCCCEESTT-SEEEEEECCCC--
T ss_pred EEeEEECCCCCEEEEEEcCCCCceEEEEEEECCCCCC----CC--ccC--CC---ceeccEEEECC-CEEEEEEecCccc
Confidence 3468999999966544 3333 599999987762 11 111 11 01246788887 778877644210
Q ss_pred -------CccceEEEEECCCCcE--EEEEecCCCCCCCCCccceEECCCCc-EEEEeC----CCCeEEEEcCCCc----e
Q 020019 121 -------NKYSAVAAYDLSTWNR--LFLTQLSGPSDGKSCADDVTVDAEGN-AYVTDV----TGSKIWKVGVKGE----F 182 (332)
Q Consensus 121 -------~~~~~l~~~d~~~g~~--~~~~~l~~~~~~~~~~ndiavd~dG~-lyvtd~----~~~~I~~v~~~g~----~ 182 (332)
.....|+.++..+++. ...... +. ...+..++.+.+||+ |+++.. ....|+.++.++. .
T Consensus 233 ~~~~~~~~~~~~v~~~~lgt~~~~~~lv~~~--~~-~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~ 309 (741)
T 1yr2_A 233 GQAFQALNYNQTVWLHRLGTPQSADQPVFAT--PE-LPKRGHGASVSSDGRWVVITSSEGTDPVNTVHVARVTNGKIGPV 309 (741)
T ss_dssp ------CCCCCEEEEEETTSCGGGCEEEECC--TT-CTTCEEEEEECTTSCEEEEEEECTTCSCCEEEEEEEETTEECCC
T ss_pred ccccccCCCCCEEEEEECCCCchhCEEEecc--CC-CCeEEEEEEECCCCCEEEEEEEccCCCcceEEEEECCCCCCccc
Confidence 0134688899877652 222222 11 112456789999996 554432 2468999887533 3
Q ss_pred EEEecCCCCCCcccccCccccCeEEEccCc-eEEEEeCC---CCeEEEEeCCCCCCccceeEEEEecCCCCCCCCeEEEe
Q 020019 183 LSIISSPLFTPKEWYKNLVGLNGIVYHPDG-FLIVIHTF---SGNLFKIDIVDGVGEGEEIKLIRVAGGPLSFGDGLELL 258 (332)
Q Consensus 183 ~~~~~~~~~~~p~~~~~~~~~nGi~~~~dG-~Lyva~~~---~~~i~~id~~~~~~~~~~~~~v~~~g~~~~~pdGi~~~ 258 (332)
..+.... ...... +++|| .||+.... +.+|++++++++. . ..+.+- ++ .-....++.+.
T Consensus 310 ~~l~~~~-----------~~~~~~-~~~dg~~l~~~s~~~~~~~~l~~~d~~~~~--~-~~~~l~-~~-~~~~l~~~~~~ 372 (741)
T 1yr2_A 310 TALIPDL-----------KAQWDF-VDGVGDQLWFVSGDGAPLKKIVRVDLSGST--P-RFDTVV-PE-SKDNLESVGIA 372 (741)
T ss_dssp EEEECSS-----------SSCEEE-EEEETTEEEEEECTTCTTCEEEEEECSSSS--C-EEEEEE-CC-CSSEEEEEEEE
T ss_pred EEecCCC-----------CceEEE-EeccCCEEEEEECCCCCCCEEEEEeCCCCc--c-ccEEEe-cC-CCCeEEEEEEE
Confidence 3332211 011222 34777 78776542 5679999988641 0 222222 21 11224466666
Q ss_pred CCCeEEEEe
Q 020019 259 SPTKLVVAG 267 (332)
Q Consensus 259 ~dG~l~va~ 267 (332)
++.|+++.
T Consensus 373 -~~~lv~~~ 380 (741)
T 1yr2_A 373 -GNRLFASY 380 (741)
T ss_dssp -BTEEEEEE
T ss_pred -CCEEEEEE
Confidence 56777764
|
| >3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A | Back alignment and structure |
|---|
Probab=96.98 E-value=0.2 Score=45.27 Aligned_cols=75 Identities=12% Similarity=0.147 Sum_probs=53.5
Q ss_pred CCccceEECCCCcEEEEeCCCCe-EEEEcCC-CceEEEecCCCCCCcccccCccccCeEEEccCceEEEEeCCCCeEEEE
Q 020019 150 SCADDVTVDAEGNAYVTDVTGSK-IWKVGVK-GEFLSIISSPLFTPKEWYKNLVGLNGIVYHPDGFLIVIHTFSGNLFKI 227 (332)
Q Consensus 150 ~~~ndiavd~dG~lyvtd~~~~~-I~~v~~~-g~~~~~~~~~~~~~p~~~~~~~~~nGi~~~~dG~Lyva~~~~~~i~~i 227 (332)
...+.+++.|+|++.++-+..+. |...|.. ++....+.... .....+.++|+|||.+.++-...+.|..+
T Consensus 196 ~~v~~~~~s~~g~~l~s~s~d~~~v~iwd~~~~~~~~~~~~g~--------h~~~v~~~~~s~~~~~l~s~s~d~~v~iw 267 (355)
T 3vu4_A 196 NPIKMVRLNRKSDMVATCSQDGTIIRVFKTEDGVLVREFRRGL--------DRADVVDMKWSTDGSKLAVVSDKWTLHVF 267 (355)
T ss_dssp SCEEEEEECTTSSEEEEEETTCSEEEEEETTTCCEEEEEECTT--------CCSCEEEEEECTTSCEEEEEETTCEEEEE
T ss_pred CceEEEEECCCCCEEEEEeCCCCEEEEEECCCCcEEEEEEcCC--------CCCcEEEEEECCCCCEEEEEECCCEEEEE
Confidence 45778999999999998888887 8888875 55444332110 11245789999999666666677888888
Q ss_pred eCCCC
Q 020019 228 DIVDG 232 (332)
Q Consensus 228 d~~~~ 232 (332)
++..+
T Consensus 268 ~~~~~ 272 (355)
T 3vu4_A 268 EIFND 272 (355)
T ss_dssp ESSCC
T ss_pred EccCC
Confidence 88654
|
| >2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=96.96 E-value=0.059 Score=55.67 Aligned_cols=167 Identities=13% Similarity=0.051 Sum_probs=103.4
Q ss_pred cccceEEcCCCCEEEEEecCCeEEEEECCCCCCCccceeeeEEecccCcCCCccceEEEeCCCCeEEEEEeCcCCCccce
Q 020019 46 FRECAKWDDSGRRFIVSFLDGGIGQVAVPDDYPPGTVLEEVTLVKDLELTGNGSLGLVLDHPRNRLLVVAADVFGNKYSA 125 (332)
Q Consensus 46 ~pegia~d~~g~~~~~~~~~g~I~~vd~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~vd~~~g~l~v~~~~~~~~~~~~ 125 (332)
....++|.+ |+++++...++.|..+|..+++. .. ++. .+ .....++++++...|+++.. .+.
T Consensus 60 ~V~~l~fsp-g~~L~S~s~D~~v~lWd~~~~~~----~~--~~~-~~----~~V~~v~~sp~g~~l~sgs~------dg~ 121 (902)
T 2oaj_A 60 AIKEMRFVK-GIYLVVINAKDTVYVLSLYSQKV----LT--TVF-VP----GKITSIDTDASLDWMLIGLQ------NGS 121 (902)
T ss_dssp CEEEEEEET-TTEEEEEETTCEEEEEETTTCSE----EE--EEE-CS----SCEEEEECCTTCSEEEEEET------TSC
T ss_pred CEEEEEEcC-CCEEEEEECcCeEEEEECCCCcE----EE--EEc-CC----CCEEEEEECCCCCEEEEEcC------CCc
Confidence 346789999 88565557789999999887652 22 222 22 25678999997444444443 356
Q ss_pred EEEEECCCCcEEEEEec-------CCCCCCCCCccceEECCC-CcEEEEeCCCCeEEEEcCC-CceEEEecCCCCC-Ccc
Q 020019 126 VAAYDLSTWNRLFLTQL-------SGPSDGKSCADDVTVDAE-GNAYVTDVTGSKIWKVGVK-GEFLSIISSPLFT-PKE 195 (332)
Q Consensus 126 l~~~d~~~g~~~~~~~l-------~~~~~~~~~~ndiavd~d-G~lyvtd~~~~~I~~v~~~-g~~~~~~~~~~~~-~p~ 195 (332)
|..||.++++... ..+ ..+.........++++|+ ++++++-+..+.| ..|.. ++....+...... .+.
T Consensus 122 V~lwd~~~~~~~~-~~i~~~~~~~~~~~~h~~~V~sl~~sp~~~~~l~~g~~dg~v-lWd~~~~~~~~~~~~~~~~g~~~ 199 (902)
T 2oaj_A 122 MIVYDIDRDQLSS-FKLDNLQKSSFFPAARLSPIVSIQWNPRDIGTVLISYEYVTL-TYSLVENEIKQSFIYELPPFAPG 199 (902)
T ss_dssp EEEEETTTTEEEE-EEECCHHHHHTCSSSCCCCCCEEEEETTEEEEEEEECSSCEE-EEETTTTEEEEEECCCBCTTCCC
T ss_pred EEEEECCCCcccc-ceeccccccccccccCCCCeEEEEEccCCCCEEEEEeCCCcE-EEECCCCceEEEEecccCCcCCC
Confidence 8899999877532 211 001111246788999997 4566666777888 88876 3433333211000 000
Q ss_pred -------cccCccccCeEEEccCceEEEEeCCCCeEEEEeCCCC
Q 020019 196 -------WYKNLVGLNGIVYHPDGFLIVIHTFSGNLFKIDIVDG 232 (332)
Q Consensus 196 -------~~~~~~~~nGi~~~~dG~Lyva~~~~~~i~~id~~~~ 232 (332)
........+.++|+|||..+++-...+.|..+|..++
T Consensus 200 ~~~~~~~~~~h~~~V~~v~fspdg~~lasgs~Dg~i~lWd~~~g 243 (902)
T 2oaj_A 200 GDFSEKTNEKRTPKVIQSLYHPNSLHIITIHEDNSLVFWDANSG 243 (902)
T ss_dssp STTCCCTTSCBCCCEEEEEECTTSSEEEEEETTCCEEEEETTTC
T ss_pred cccccccccccCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCC
Confidence 0000134689999999966666677888988998876
|
| >2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=96.96 E-value=0.084 Score=50.99 Aligned_cols=190 Identities=14% Similarity=0.091 Sum_probs=111.2
Q ss_pred ccceEEcCC------CCEEEEEecCCeEEEEECCCCCCCccceeeeEEecccC--cC--CCccceEEEeCCCCeEEEEEe
Q 020019 47 RECAKWDDS------GRRFIVSFLDGGIGQVAVPDDYPPGTVLEEVTLVKDLE--LT--GNGSLGLVLDHPRNRLLVVAA 116 (332)
Q Consensus 47 pegia~d~~------g~~~~~~~~~g~I~~vd~~~~~~~~~~~~~~~~~~~~~--~~--~~~~~gi~vd~~~g~l~v~~~ 116 (332)
...++|.|+ ++++.+...+|.|..++..++... .........|. +. ...+..+++.++ +.|..+..
T Consensus 210 V~~v~wsp~~~~~~~~~~LAs~s~DgtvrlWd~~~~~~~---~~~~~~~~~p~~~l~~h~~~v~sv~~s~~-~~lasgs~ 285 (524)
T 2j04_B 210 VWDLKWHEGCHAPHLVGCLSFVSQEGTINFLEIIDNATD---VHVFKMCEKPSLTLSLADSLITTFDFLSP-TTVVCGFK 285 (524)
T ss_dssp EEEEEECSSCCCSSSSCEEEEEETTSCEEEEECCCCSSS---SSEEECCCSCSEEECCTTTCEEEEEESSS-SEEEEEET
T ss_pred EEEEEECCCCCCCCCCceEEEEecCCeEEEEEcCCCccc---cccceeecCceEEEEcCCCCEEEEEecCC-CeEEEEeC
Confidence 456888886 456666677899988887655320 00000000110 11 124678888875 66555543
Q ss_pred CcCCCccceEEEEECCCCc-EEEEEecCCCCCCCCCccce--EECCCC-cEEEEeCCCCeEEEEcCC-CceE-EEecCCC
Q 020019 117 DVFGNKYSAVAAYDLSTWN-RLFLTQLSGPSDGKSCADDV--TVDAEG-NAYVTDVTGSKIWKVGVK-GEFL-SIISSPL 190 (332)
Q Consensus 117 ~~~~~~~~~l~~~d~~~g~-~~~~~~l~~~~~~~~~~ndi--avd~dG-~lyvtd~~~~~I~~v~~~-g~~~-~~~~~~~ 190 (332)
.+.|..||+++++ ....... . ....+++ ++.++| ++++|-+..+.|...|.. ++.. .+.....
T Consensus 286 ------DgtV~lWD~~~~~~~~~~~~~--H---~~~V~sv~~~~s~~g~~~laS~S~D~tvklWD~~~~~~~~~~~~~~~ 354 (524)
T 2j04_B 286 ------NGFVAEFDLTDPEVPSFYDQV--H---DSYILSVSTAYSDFEDTVVSTVAVDGYFYIFNPKDIATTKTTVSRFR 354 (524)
T ss_dssp ------TSEEEEEETTBCSSCSEEEEC--S---SSCEEEEEEECCTTSCCEEEEEETTSEEEEECGGGHHHHCEEEEECS
T ss_pred ------CCEEEEEECCCCCCceEEeec--c---cccEEEEEEEcCCCCCeEEEEeccCCeEEEEECCCCCcccccccccc
Confidence 3578899998663 2222221 1 2345667 456777 899998888988888865 2321 1111100
Q ss_pred CCCcccccCccccCeEEEccCceEEEEeCCCCeEEEEeCCCCCCccceeEEEEecCCCCCCCCeEEEeCCCeEEEEe
Q 020019 191 FTPKEWYKNLVGLNGIVYHPDGFLIVIHTFSGNLFKIDIVDGVGEGEEIKLIRVAGGPLSFGDGLELLSPTKLVVAG 267 (332)
Q Consensus 191 ~~~p~~~~~~~~~nGi~~~~dG~Lyva~~~~~~i~~id~~~~~~~~~~~~~v~~~g~~~~~pdGi~~~~dG~l~va~ 267 (332)
......++|+|++..+++-...+.|..+++.++. ....+.. .......+++.|+|+++++.
T Consensus 355 ---------~~~v~~v~fsp~~~~l~s~~~d~tv~lwd~~~~~----~~~~l~g---H~~~V~sva~Sp~g~~l~Sg 415 (524)
T 2j04_B 355 ---------GSNLVPVVYCPQIYSYIYSDGASSLRAVPSRAAF----AVHPLVS---RETTITAIGVSRLHPMVLAG 415 (524)
T ss_dssp ---------CCSCCCEEEETTTTEEEEECSSSEEEEEETTCTT----CCEEEEE---CSSCEEEEECCSSCCBCEEE
T ss_pred ---------cCcccceEeCCCcCeEEEeCCCCcEEEEECcccc----cceeeec---CCCceEEEEeCCCCCeEEEE
Confidence 0124679999999667776677778888887652 2232321 22445677888887766664
|
| >2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B* | Back alignment and structure |
|---|
Probab=96.83 E-value=0.3 Score=45.17 Aligned_cols=218 Identities=15% Similarity=0.109 Sum_probs=115.4
Q ss_pred ccceEEcCCCCEEEEEecCCeEEEEECCCCCCCccceeeeEEecccCcCCCccceEEEeCCCCeEEEEEeCcCCCccceE
Q 020019 47 RECAKWDDSGRRFIVSFLDGGIGQVAVPDDYPPGTVLEEVTLVKDLELTGNGSLGLVLDHPRNRLLVVAADVFGNKYSAV 126 (332)
Q Consensus 47 pegia~d~~g~~~~~~~~~g~I~~vd~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~vd~~~g~l~v~~~~~~~~~~~~l 126 (332)
...+.++ ++.+++...++.|..++..+++. .. .+.... .....+.++. ..++++.. .+.+
T Consensus 202 v~~~~~~--~~~l~s~s~dg~i~~wd~~~~~~----~~--~~~~~~----~~v~~~~~~~--~~l~~~~~------dg~i 261 (445)
T 2ovr_B 202 VRCMHLH--EKRVVSGSRDATLRVWDIETGQC----LH--VLMGHV----AAVRCVQYDG--RRVVSGAY------DFMV 261 (445)
T ss_dssp EEEEEEE--TTEEEEEETTSEEEEEESSSCCE----EE--EEECCS----SCEEEEEECS--SCEEEEET------TSCE
T ss_pred EEEEEec--CCEEEEEeCCCEEEEEECCCCcE----EE--EEcCCc----ccEEEEEECC--CEEEEEcC------CCEE
Confidence 3445564 45566666788999999876652 11 222111 2456777743 45555543 3568
Q ss_pred EEEECCCCcEEEEEecCCCCCCCCCccceEECCCCcEEEEeCCCCeEEEEcCC-CceEEEecCCCCCCcccccCccccCe
Q 020019 127 AAYDLSTWNRLFLTQLSGPSDGKSCADDVTVDAEGNAYVTDVTGSKIWKVGVK-GEFLSIISSPLFTPKEWYKNLVGLNG 205 (332)
Q Consensus 127 ~~~d~~~g~~~~~~~l~~~~~~~~~~ndiavd~dG~lyvtd~~~~~I~~v~~~-g~~~~~~~~~~~~~p~~~~~~~~~nG 205 (332)
..||.++++....... . ......+++ +|+.+++-+..+.|..+|.. ++....+... ......
T Consensus 262 ~iwd~~~~~~~~~~~~--~---~~~v~~~~~--~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~----------~~~v~~ 324 (445)
T 2ovr_B 262 KVWDPETETCLHTLQG--H---TNRVYSLQF--DGIHVVSGSLDTSIRVWDVETGNCIHTLTGH----------QSLTSG 324 (445)
T ss_dssp EEEEGGGTEEEEEECC--C---SSCEEEEEE--CSSEEEEEETTSCEEEEETTTCCEEEEECCC----------CSCEEE
T ss_pred EEEECCCCcEeEEecC--C---CCceEEEEE--CCCEEEEEeCCCeEEEEECCCCCEEEEEcCC----------cccEEE
Confidence 8999988776544332 1 234556666 66777777778888888865 4543332211 112234
Q ss_pred EEEccCceEEEEeCCCCeEEEEeCCCCCCccceeEEEEecCCCCCCCCeEEEeCCCeEEEE-eCC-ceEEEEcCCCceEE
Q 020019 206 IVYHPDGFLIVIHTFSGNLFKIDIVDGVGEGEEIKLIRVAGGPLSFGDGLELLSPTKLVVA-GNP-SARLVESSDGWETA 283 (332)
Q Consensus 206 i~~~~dG~Lyva~~~~~~i~~id~~~~~~~~~~~~~v~~~g~~~~~pdGi~~~~dG~l~va-~~~-~~~~v~~~dg~~~~ 283 (332)
+.+ ++.++++-...+.|..+++.+++ .+..+............++++ ++++++ ... ..++....++....
T Consensus 325 ~~~--~~~~l~~~~~dg~i~vwd~~~~~----~~~~~~~~~~~~~~v~~~~~~--~~~l~s~~~dg~v~iwd~~~~~~~~ 396 (445)
T 2ovr_B 325 MEL--KDNILVSGNADSTVKIWDIKTGQ----CLQTLQGPNKHQSAVTCLQFN--KNFVITSSDDGTVKLWDLKTGEFIR 396 (445)
T ss_dssp EEE--ETTEEEEEETTSCEEEEETTTCC----EEEEECSTTSCSSCEEEEEEC--SSEEEEEETTSEEEEEETTTCCEEE
T ss_pred EEE--eCCEEEEEeCCCeEEEEECCCCc----EEEEEccCCCCCCCEEEEEEC--CCEEEEEeCCCeEEEEECCCCceee
Confidence 554 45344445567789999988762 454444321122334566665 344444 433 34444566663332
Q ss_pred EEEeeecCCCcccceEEEE-ECCeEEE
Q 020019 284 AVVAKFSGPVHRLATAATV-KDGRVYL 309 (332)
Q Consensus 284 ~~~~~~~~~~~~~pt~va~-~~g~lyv 309 (332)
.+......+.....+++++ .++.+.+
T Consensus 397 ~~~~~~~~~~~~~v~~~~~s~~~~~la 423 (445)
T 2ovr_B 397 NLVTLESGGSGGVVWRIRASNTKLVCA 423 (445)
T ss_dssp EEEECTTGGGTCEEEEEEECSSEEEEE
T ss_pred eeeccccCCCCceEEEEEecCCEEEEE
Confidence 2221111111223466777 4444433
|
| >4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens} | Back alignment and structure |
|---|
Probab=96.79 E-value=0.23 Score=43.10 Aligned_cols=162 Identities=8% Similarity=-0.002 Sum_probs=97.1
Q ss_pred CccccceEEcCCCCEEEEEecCCeEEEEECCCCCCCccceeeeEEecccCcCCCccceEEEeCCCCeEEEEEeCcCCCcc
Q 020019 44 SFFRECAKWDDSGRRFIVSFLDGGIGQVAVPDDYPPGTVLEEVTLVKDLELTGNGSLGLVLDHPRNRLLVVAADVFGNKY 123 (332)
Q Consensus 44 ~~~pegia~d~~g~~~~~~~~~g~I~~vd~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~vd~~~g~l~v~~~~~~~~~~ 123 (332)
......+.+.++++.+++...++.|..++..+++.. .. ....... .......+...+....+.....+. ..
T Consensus 150 ~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~---~~--~~~~~~~-~~~~v~~~~~~~~~~~~~~~~~~~---~~ 220 (318)
T 4ggc_A 150 SQEVCGLRWAPDGRHLASGGNDNLVNVWPSAPGEGG---WV--PLQTFTQ-HQGAVKAVAWCPWQSNVLATGGGT---SD 220 (318)
T ss_dssp SSCEEEEEECTTSSEEEEEETTSCEEEEESSCBTTB---SC--CSEEECC-CCSCEEEEEECTTSTTEEEEEECT---TT
T ss_pred cCceEEEEEcCCCCEEEEEecCcceeEEECCCCccc---cc--ceeeecc-cCCceEEEEecCCCCcEEEEEecC---CC
Confidence 335567889999998887777899999998765421 00 0110011 112456777777645544333221 24
Q ss_pred ceEEEEECCCCcEEEEEecCCCCCCCCCccceEECCCCcEEEE--eCCCCeEEEEcCC-CceEEEecCCCCCCcccccCc
Q 020019 124 SAVAAYDLSTWNRLFLTQLSGPSDGKSCADDVTVDAEGNAYVT--DVTGSKIWKVGVK-GEFLSIISSPLFTPKEWYKNL 200 (332)
Q Consensus 124 ~~l~~~d~~~g~~~~~~~l~~~~~~~~~~ndiavd~dG~lyvt--d~~~~~I~~v~~~-g~~~~~~~~~~~~~p~~~~~~ 200 (332)
..+..||.+.++....... ......+.+.++++.+++ ....+.|..+|.. ++....+.. ..
T Consensus 221 ~~i~lwd~~~~~~~~~~~~------~~~v~~~~~~~~~~~~~~~sg~~d~~i~iwd~~~~~~~~~l~g----------H~ 284 (318)
T 4ggc_A 221 RHIRIWNVCSGACLSAVDA------HSQVCSILWSPHYKELISGHGFAQNQLVIWKYPTMAKVAELKG----------HT 284 (318)
T ss_dssp CEEEEEETTTCCEEEEEEC------SSCEEEEEEETTTTEEEEEECTTTCCEEEEETTTCCEEEEECC----------CS
T ss_pred CEEEEEecccccccccccc------eeeeeeeeecccccceEEEEEcCCCEEEEEECCCCcEEEEEcC----------CC
Confidence 5688899988776544332 233556788888764443 3356788888865 554433321 11
Q ss_pred cccCeEEEccCceEEEEeCCCCeEEEEeCC
Q 020019 201 VGLNGIVYHPDGFLIVIHTFSGNLFKIDIV 230 (332)
Q Consensus 201 ~~~nGi~~~~dG~Lyva~~~~~~i~~id~~ 230 (332)
...+.|+|+|||.+.++-...++|..+++.
T Consensus 285 ~~V~~l~~spdg~~l~S~s~D~~v~iWd~~ 314 (318)
T 4ggc_A 285 SRVLSLTMSPDGATVASAAADETLRLWRCF 314 (318)
T ss_dssp SCEEEEEECTTSSCEEEEETTTEEEEECCS
T ss_pred CCEEEEEEcCCCCEEEEEecCCeEEEEECC
Confidence 235789999999555565667777666654
|
| >4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens} | Back alignment and structure |
|---|
Probab=96.70 E-value=0.26 Score=42.67 Aligned_cols=197 Identities=13% Similarity=0.055 Sum_probs=98.8
Q ss_pred cCCccccceEEcCCCCEEEEEecCCeEEEEECCCCCCCccceeeeEEecccCcCCCccceEEEeCCCCeEEEEEeCcCCC
Q 020019 42 SSSFFRECAKWDDSGRRFIVSFLDGGIGQVAVPDDYPPGTVLEEVTLVKDLELTGNGSLGLVLDHPRNRLLVVAADVFGN 121 (332)
Q Consensus 42 ~~~~~pegia~d~~g~~~~~~~~~g~I~~vd~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~vd~~~g~l~v~~~~~~~~ 121 (332)
........++++++|+.+++...++.|..++..+++. .. .+.... .....+..+ +.+.++...
T Consensus 65 ~~~~~V~~v~~~~~~~~l~sgs~Dg~v~iw~~~~~~~----~~--~~~~h~----~~~~~~~~~---~~~l~s~~~---- 127 (318)
T 4ggc_A 65 QPGEYISSVAWIKEGNYLAVGTSSAEVQLWDVQQQKR----LR--NMTSHS----ARVGSLSWN---SYILSSGSR---- 127 (318)
T ss_dssp STTCCEEEEEECTTSSEEEEEETTSEEEEEETTTTEE----EE--EEECCS----SCEEEEEEE---TTEEEEEET----
T ss_pred CCCCeEEEEEECCCCCEEEEEECCCcEEEeecCCcee----EE--EecCcc----ceEEEeecC---CCEEEEEec----
Confidence 3333456799999999888888889999999887652 11 222111 122333333 333333221
Q ss_pred ccceEEEEECCCCcEEEEEecCCCCCCCCCccceEECCCCcEEEEeCCCCeEEEEcCC-Cce-----EE-----------
Q 020019 122 KYSAVAAYDLSTWNRLFLTQLSGPSDGKSCADDVTVDAEGNAYVTDVTGSKIWKVGVK-GEF-----LS----------- 184 (332)
Q Consensus 122 ~~~~l~~~d~~~g~~~~~~~l~~~~~~~~~~ndiavd~dG~lyvtd~~~~~I~~v~~~-g~~-----~~----------- 184 (332)
.+.+..++..++..... .+.+ .......+++.++|+.+++-...+.|..+|.. ++. ..
T Consensus 128 -~~~~~~~~~~~~~~~~~-~~~~---~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~ 202 (318)
T 4ggc_A 128 -SGHIHHHDVRVAEHHVA-TLSG---HSQEVCGLRWAPDGRHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAV 202 (318)
T ss_dssp -TSEEEEEETTSSSCEEE-EEEC---CSSCEEEEEECTTSSEEEEEETTSCEEEEESSCBTTBSCCSEEECCCCSCEEEE
T ss_pred -CCceEeeecCCCceeEE-EEcC---ccCceEEEEEcCCCCEEEEEecCcceeEEECCCCcccccceeeecccCCceEEE
Confidence 23455566655432221 1111 12344556666777666665555555555432 110 00
Q ss_pred ----------------------EecCCCCCCcccccCccccCeEEEccCc-eEEEEe-CCCCeEEEEeCCCCCCccceeE
Q 020019 185 ----------------------IISSPLFTPKEWYKNLVGLNGIVYHPDG-FLIVIH-TFSGNLFKIDIVDGVGEGEEIK 240 (332)
Q Consensus 185 ----------------------~~~~~~~~~p~~~~~~~~~nGi~~~~dG-~Lyva~-~~~~~i~~id~~~~~~~~~~~~ 240 (332)
+++..................+++.+++ .++++. ...+.|..++..+++ .+.
T Consensus 203 ~~~~~~~~~~~~~~~~~~~~i~lwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~sg~~d~~i~iwd~~~~~----~~~ 278 (318)
T 4ggc_A 203 AWCPWQSNVLATGGGTSDRHIRIWNVCSGACLSAVDAHSQVCSILWSPHYKELISGHGFAQNQLVIWKYPTMA----KVA 278 (318)
T ss_dssp EECTTSTTEEEEEECTTTCEEEEEETTTCCEEEEEECSSCEEEEEEETTTTEEEEEECTTTCCEEEEETTTCC----EEE
T ss_pred EecCCCCcEEEEEecCCCCEEEEEecccccccccccceeeeeeeeecccccceEEEEEcCCCEEEEEECCCCc----EEE
Confidence 0000000000000112234566777777 555543 346677777777652 344
Q ss_pred EEEecCCCCCCCCeEEEeCCCeEEEEe
Q 020019 241 LIRVAGGPLSFGDGLELLSPTKLVVAG 267 (332)
Q Consensus 241 ~v~~~g~~~~~pdGi~~~~dG~l~va~ 267 (332)
.+. + +......|++.+||+++++.
T Consensus 279 ~l~--g-H~~~V~~l~~spdg~~l~S~ 302 (318)
T 4ggc_A 279 ELK--G-HTSRVLSLTMSPDGATVASA 302 (318)
T ss_dssp EEC--C-CSSCEEEEEECTTSSCEEEE
T ss_pred EEc--C-CCCCEEEEEEcCCCCEEEEE
Confidence 333 1 22445677888887766664
|
| >1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum} | Back alignment and structure |
|---|
Probab=96.66 E-value=0.63 Score=46.54 Aligned_cols=158 Identities=10% Similarity=0.094 Sum_probs=85.4
Q ss_pred cCCCCEEE-EEec----CCeEEEEECC---CCCCCccceeeeEEecccCcC--C-CccceEEEeCCCCeEEEEEeCcCCC
Q 020019 53 DDSGRRFI-VSFL----DGGIGQVAVP---DDYPPGTVLEEVTLVKDLELT--G-NGSLGLVLDHPRNRLLVVAADVFGN 121 (332)
Q Consensus 53 d~~g~~~~-~~~~----~g~I~~vd~~---~~~~~~~~~~~~~~~~~~~~~--~-~~~~gi~vd~~~g~l~v~~~~~~~~ 121 (332)
.++|+.++ +... .+.|++.+.. +++. + .++....+. + ....++.+.|+ |+..+...+..+.
T Consensus 115 ~pdG~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~-----~--~lld~~~l~~~~~~~~~~~~~SPD-G~~la~~~~~~G~ 186 (741)
T 1yr2_A 115 QRRGASVFYSWNSGLMNQSQLLVRPADAPVGTKG-----R--VLLDPNTWAKDGATALDAWAASDD-GRLLAYSVQDGGS 186 (741)
T ss_dssp EEETTEEEEEEECSSCSSCEEEEEETTSCTTCCC-----E--EEECGGGCC----EEEEEEEECTT-SSEEEEEEEETTC
T ss_pred EEECCEEEEEEEcCCCeEEEEEEEcCCccCCCCC-----E--EEECHHHhccCCCEEEEeEEECCC-CCEEEEEEcCCCC
Confidence 36777554 3322 2568999875 4442 2 343211111 1 13567899997 6533222221111
Q ss_pred ccceEEEEECCCCcEEEEEecCCCCCCCCCccceEECCCCcEEEEeCC-------------CCeEEEEcCCCce---EEE
Q 020019 122 KYSAVAAYDLSTWNRLFLTQLSGPSDGKSCADDVTVDAEGNAYVTDVT-------------GSKIWKVGVKGEF---LSI 185 (332)
Q Consensus 122 ~~~~l~~~d~~~g~~~~~~~l~~~~~~~~~~ndiavd~dG~lyvtd~~-------------~~~I~~v~~~g~~---~~~ 185 (332)
....|+++|+++|+.... .+. .....++++.||..||++... ...|++.+..+.. ..+
T Consensus 187 e~~~i~v~dl~tg~~~~~-~~~-----~~~~~~~~wspD~~l~~~~~~~~~~~~~~~~~~~~~~v~~~~lgt~~~~~~lv 260 (741)
T 1yr2_A 187 DWRTVKFVGVADGKPLAD-ELK-----WVKFSGLAWLGNDALLYSRFAEPKEGQAFQALNYNQTVWLHRLGTPQSADQPV 260 (741)
T ss_dssp SEEEEEEEETTTCCEEEE-EEE-----EEESCCCEESTTSEEEEEECCCC--------CCCCCEEEEEETTSCGGGCEEE
T ss_pred ceEEEEEEECCCCCCCCc-cCC-----CceeccEEEECCCEEEEEEecCcccccccccCCCCCEEEEEECCCCchhCEEE
Confidence 235699999999987543 221 011246889888336666432 2358877764221 222
Q ss_pred ecCCCCCCcccccCccccCeEEEccCc-eEEEEeC----CCCeEEEEeCCCC
Q 020019 186 ISSPLFTPKEWYKNLVGLNGIVYHPDG-FLIVIHT----FSGNLFKIDIVDG 232 (332)
Q Consensus 186 ~~~~~~~~p~~~~~~~~~nGi~~~~dG-~Lyva~~----~~~~i~~id~~~~ 232 (332)
...+. ......++.+++|| .|+++.. .+..|+.++++++
T Consensus 261 ~~~~~--------~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~l~~~d~~~~ 304 (741)
T 1yr2_A 261 FATPE--------LPKRGHGASVSSDGRWVVITSSEGTDPVNTVHVARVTNG 304 (741)
T ss_dssp ECCTT--------CTTCEEEEEECTTSCEEEEEEECTTCSCCEEEEEEEETT
T ss_pred eccCC--------CCeEEEEEEECCCCCEEEEEEEccCCCcceEEEEECCCC
Confidence 22110 00124588999999 6776654 2458999998865
|
| >2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A | Back alignment and structure |
|---|
Probab=96.62 E-value=0.088 Score=49.40 Aligned_cols=146 Identities=16% Similarity=0.126 Sum_probs=87.1
Q ss_pred ccceEEEeCCCCeEEE-E--EeCcCCCccceEEEEECCCC--------cEEEEEecCCCCCCCCCccceEECCC-CcEEE
Q 020019 98 GSLGLVLDHPRNRLLV-V--AADVFGNKYSAVAAYDLSTW--------NRLFLTQLSGPSDGKSCADDVTVDAE-GNAYV 165 (332)
Q Consensus 98 ~~~gi~vd~~~g~l~v-~--~~~~~~~~~~~l~~~d~~~g--------~~~~~~~l~~~~~~~~~~ndiavd~d-G~lyv 165 (332)
.+..++++++ |++.+ + ... ..+.+.+||.+++ +........ ........++++.|+ +++++
T Consensus 94 ~v~~l~~spd-g~~lav~~~sgs----~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~--~~h~~~V~~v~~~p~~~~~la 166 (434)
T 2oit_A 94 PIHHLALSCD-NLTLSACMMSSE----YGSIIAFFDVRTFSNEAKQQKRPFAYHKLL--KDAGGMVIDMKWNPTVPSMVA 166 (434)
T ss_dssp CEEEEEECTT-SCEEEEEEEETT----TEEEEEEEEHHHHHCTTCSSCCCSEEEECC--CSGGGSEEEEEECSSCTTEEE
T ss_pred cccEEEEcCC-CCEEEEEEeccC----CCceEEEEEccccccCCcCCcceeeeeecc--CCCCCceEEEEECCCCCCEEE
Confidence 4789999997 55444 2 221 2457889997654 111122221 111246788999998 78898
Q ss_pred EeCCCCeEEEEcCCCceEEEecCCCCCCcccccCccccCeEEEccCc-eEEEEeCCCCeEEEEeCCCCCCccceeEEEEe
Q 020019 166 TDVTGSKIWKVGVKGEFLSIISSPLFTPKEWYKNLVGLNGIVYHPDG-FLIVIHTFSGNLFKIDIVDGVGEGEEIKLIRV 244 (332)
Q Consensus 166 td~~~~~I~~v~~~g~~~~~~~~~~~~~p~~~~~~~~~nGi~~~~dG-~Lyva~~~~~~i~~id~~~~~~~~~~~~~v~~ 244 (332)
+-+..+.|..+|............ .......++|+|+| .|+++. ..++|..++.+ ++ ....+..
T Consensus 167 s~s~Dg~v~iwD~~~~~~~~~~~~---------~~~~v~~v~wspdg~~lasgs-~dg~v~iwd~~-~~----~~~~~~~ 231 (434)
T 2oit_A 167 VCLADGSIAVLQVTETVKVCATLP---------STVAVTSVCWSPKGKQLAVGK-QNGTVVQYLPT-LQ----EKKVIPC 231 (434)
T ss_dssp EEETTSCEEEEEESSSEEEEEEEC---------GGGCEEEEEECTTSSCEEEEE-TTSCEEEECTT-CC----EEEEECC
T ss_pred EEECCCeEEEEEcCCCcceeeccC---------CCCceeEEEEcCCCCEEEEEc-CCCcEEEEccC-Cc----ccccccC
Confidence 888889888888664322211100 11346799999999 666665 67789888887 41 3333332
Q ss_pred cCCCC-----CCCCeEEEeCCCeEEEE
Q 020019 245 AGGPL-----SFGDGLELLSPTKLVVA 266 (332)
Q Consensus 245 ~g~~~-----~~pdGi~~~~dG~l~va 266 (332)
. ... .....++..+++.++++
T Consensus 232 ~-~~~~~~~~~~v~~v~w~~~~~~l~~ 257 (434)
T 2oit_A 232 P-PFYESDHPVRVLDVLWIGTYVFAIV 257 (434)
T ss_dssp C-TTCCTTSCEEEEEEEEEETTEEEEE
T ss_pred C-cccCCCCceeEEEEEEecCceEEEE
Confidence 2 111 13446777777766544
|
| >1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 | Back alignment and structure |
|---|
Probab=96.62 E-value=0.43 Score=44.05 Aligned_cols=169 Identities=17% Similarity=0.225 Sum_probs=97.2
Q ss_pred CCCEEEEEecCCeEEEEECCCCCCCccceeeeEEecccCcCCCccceEEEeCCCCeEEEEEeCcCCCccceEEEEECCCC
Q 020019 55 SGRRFIVSFLDGGIGQVAVPDDYPPGTVLEEVTLVKDLELTGNGSLGLVLDHPRNRLLVVAADVFGNKYSAVAAYDLSTW 134 (332)
Q Consensus 55 ~g~~~~~~~~~g~I~~vd~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~vd~~~g~l~v~~~~~~~~~~~~l~~~d~~~g 134 (332)
+++.+++...+|.|..++..+++. .. .+... ......+.+++ +.++.+.. .+.+..||.+++
T Consensus 182 ~~~~l~sg~~dg~i~vwd~~~~~~----~~--~~~~h----~~~v~~l~~~~--~~l~s~s~------dg~i~vwd~~~~ 243 (435)
T 1p22_A 182 DERVIITGSSDSTVRVWDVNTGEM----LN--TLIHH----CEAVLHLRFNN--GMMVTCSK------DRSIAVWDMASP 243 (435)
T ss_dssp CSSEEEEEETTSCEEEEESSSCCE----EE--EECCC----CSCEEEEECCT--TEEEEEET------TSCEEEEECSSS
T ss_pred CCCEEEEEcCCCeEEEEECCCCcE----EE--EEcCC----CCcEEEEEEcC--CEEEEeeC------CCcEEEEeCCCC
Confidence 677777777789999999876652 11 22211 12456777764 56555554 356889999887
Q ss_pred cEEEE-EecCCCCCCCCCccceEECCCCcEEEEeCCCCeEEEEcCC-CceEEEecCCCCCCcccccCccccCeEEEccCc
Q 020019 135 NRLFL-TQLSGPSDGKSCADDVTVDAEGNAYVTDVTGSKIWKVGVK-GEFLSIISSPLFTPKEWYKNLVGLNGIVYHPDG 212 (332)
Q Consensus 135 ~~~~~-~~l~~~~~~~~~~ndiavd~dG~lyvtd~~~~~I~~v~~~-g~~~~~~~~~~~~~p~~~~~~~~~nGi~~~~dG 212 (332)
+.... ..+.+ .....+.+++ +|+.+++-+..+.|..+|.. ++....+... ......+.+ ++
T Consensus 244 ~~~~~~~~~~~---~~~~v~~~~~--~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~----------~~~v~~~~~--~~ 306 (435)
T 1p22_A 244 TDITLRRVLVG---HRAAVNVVDF--DDKYIVSASGDRTIKVWNTSTCEFVRTLNGH----------KRGIACLQY--RD 306 (435)
T ss_dssp SCCEEEEEECC---CSSCEEEEEE--ETTEEEEEETTSEEEEEETTTCCEEEEEECC----------SSCEEEEEE--ET
T ss_pred CCceeeeEecC---CCCcEEEEEe--CCCEEEEEeCCCeEEEEECCcCcEEEEEcCC----------CCcEEEEEe--CC
Confidence 64322 22211 1234556666 56777777778899888876 4443333211 112345666 45
Q ss_pred eEEEEeCCCCeEEEEeCCCCCCccceeEEEEecCCCCCCCCeEEEeCCCeEEEEe
Q 020019 213 FLIVIHTFSGNLFKIDIVDGVGEGEEIKLIRVAGGPLSFGDGLELLSPTKLVVAG 267 (332)
Q Consensus 213 ~Lyva~~~~~~i~~id~~~~~~~~~~~~~v~~~g~~~~~pdGi~~~~dG~l~va~ 267 (332)
.++++-...+.|..+|..+++ .+..+.. .......+++ +++.+++.
T Consensus 307 ~~l~~g~~dg~i~iwd~~~~~----~~~~~~~---h~~~v~~~~~--~~~~l~sg 352 (435)
T 1p22_A 307 RLVVSGSSDNTIRLWDIECGA----CLRVLEG---HEELVRCIRF--DNKRIVSG 352 (435)
T ss_dssp TEEEEEETTSCEEEEETTTCC----EEEEECC---CSSCEEEEEC--CSSEEEEE
T ss_pred CEEEEEeCCCeEEEEECCCCC----EEEEEeC---CcCcEEEEEe--cCCEEEEE
Confidence 444445567789999998762 3443432 2233445555 45555543
|
| >1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 | Back alignment and structure |
|---|
Probab=96.51 E-value=0.51 Score=43.56 Aligned_cols=183 Identities=11% Similarity=0.047 Sum_probs=103.2
Q ss_pred EEcCCCCEEEEEecCCeEEEEECCCCCCCccceeeeEEecccCcCCCccceEEEeCCCCeEEEEEeCcCCCccceEEEEE
Q 020019 51 KWDDSGRRFIVSFLDGGIGQVAVPDDYPPGTVLEEVTLVKDLELTGNGSLGLVLDHPRNRLLVVAADVFGNKYSAVAAYD 130 (332)
Q Consensus 51 a~d~~g~~~~~~~~~g~I~~vd~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~vd~~~g~l~v~~~~~~~~~~~~l~~~d 130 (332)
++..+++.+++...+|.|..++..+++. .. .+.... .....+.++. ..|+.+.. .+.|.+||
T Consensus 138 ~~~~d~~~l~~g~~dg~i~iwd~~~~~~----~~--~~~~h~----~~v~~l~~~~--~~l~sg~~------dg~i~vwd 199 (435)
T 1p22_A 138 CLQYDDQKIVSGLRDNTIKIWDKNTLEC----KR--ILTGHT----GSVLCLQYDE--RVIITGSS------DSTVRVWD 199 (435)
T ss_dssp EEECCSSEEEEEESSSCEEEEESSSCCE----EE--EECCCS----SCEEEEECCS--SEEEEEET------TSCEEEEE
T ss_pred EEEECCCEEEEEeCCCeEEEEeCCCCeE----EE--EEcCCC----CcEEEEEECC--CEEEEEcC------CCeEEEEE
Confidence 4566788888777889999999876652 11 222111 2456676642 44444443 35689999
Q ss_pred CCCCcEEEEEecCCCCCCCCCccceEECCCCcEEEEeCCCCeEEEEcCCC-ceE---EEecCCCCCCcccccCccccCeE
Q 020019 131 LSTWNRLFLTQLSGPSDGKSCADDVTVDAEGNAYVTDVTGSKIWKVGVKG-EFL---SIISSPLFTPKEWYKNLVGLNGI 206 (332)
Q Consensus 131 ~~~g~~~~~~~l~~~~~~~~~~ndiavd~dG~lyvtd~~~~~I~~v~~~g-~~~---~~~~~~~~~~p~~~~~~~~~nGi 206 (332)
.++++....... . ......++++ ++.+++-+..+.|..++... +.. ..... .....+.+
T Consensus 200 ~~~~~~~~~~~~--h---~~~v~~l~~~--~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~----------~~~~v~~~ 262 (435)
T 1p22_A 200 VNTGEMLNTLIH--H---CEAVLHLRFN--NGMMVTCSKDRSIAVWDMASPTDITLRRVLVG----------HRAAVNVV 262 (435)
T ss_dssp SSSCCEEEEECC--C---CSCEEEEECC--TTEEEEEETTSCEEEEECSSSSCCEEEEEECC----------CSSCEEEE
T ss_pred CCCCcEEEEEcC--C---CCcEEEEEEc--CCEEEEeeCCCcEEEEeCCCCCCceeeeEecC----------CCCcEEEE
Confidence 999887654432 1 2345556665 34677767778888887652 221 11111 11234566
Q ss_pred EEccCc-eEEEEeCCCCeEEEEeCCCCCCccceeEEEEecCCCCCCCCeEEEeCCCeEEEEeC-CceEEEEcCCC
Q 020019 207 VYHPDG-FLIVIHTFSGNLFKIDIVDGVGEGEEIKLIRVAGGPLSFGDGLELLSPTKLVVAGN-PSARLVESSDG 279 (332)
Q Consensus 207 ~~~~dG-~Lyva~~~~~~i~~id~~~~~~~~~~~~~v~~~g~~~~~pdGi~~~~dG~l~va~~-~~~~~v~~~dg 279 (332)
++ ++ .|+++ ...+.|..+|+.+++ .+..+.. .......+.+++ ..++++.. +..++.....+
T Consensus 263 ~~--~~~~l~s~-~~dg~i~vwd~~~~~----~~~~~~~---~~~~v~~~~~~~-~~l~~g~~dg~i~iwd~~~~ 326 (435)
T 1p22_A 263 DF--DDKYIVSA-SGDRTIKVWNTSTCE----FVRTLNG---HKRGIACLQYRD-RLVVSGSSDNTIRLWDIECG 326 (435)
T ss_dssp EE--ETTEEEEE-ETTSEEEEEETTTCC----EEEEEEC---CSSCEEEEEEET-TEEEEEETTSCEEEEETTTC
T ss_pred Ee--CCCEEEEE-eCCCeEEEEECCcCc----EEEEEcC---CCCcEEEEEeCC-CEEEEEeCCCeEEEEECCCC
Confidence 66 56 55544 567889999998762 4444442 223344555542 33444443 33454455556
|
| >1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens} | Back alignment and structure |
|---|
Probab=96.47 E-value=0.019 Score=57.10 Aligned_cols=112 Identities=9% Similarity=0.072 Sum_probs=69.2
Q ss_pred ceEEEeCCCCeEEEEEeCcCCCccceEEEEECCCCcEEEEEecCCCCCCCCCccceEECCCCc-EEEEeC--------CC
Q 020019 100 LGLVLDHPRNRLLVVAADVFGNKYSAVAAYDLSTWNRLFLTQLSGPSDGKSCADDVTVDAEGN-AYVTDV--------TG 170 (332)
Q Consensus 100 ~gi~vd~~~g~l~v~~~~~~~~~~~~l~~~d~~~g~~~~~~~l~~~~~~~~~~ndiavd~dG~-lyvtd~--------~~ 170 (332)
.++...++ |++++... .+.|.+||.++++........ .........+++.|||+ |+++.. ..
T Consensus 19 ~~~~~s~d-g~~~~~~~------d~~i~~~~~~~g~~~~~~~~~--~~~~~~~~~~~~SpDg~~la~~~~~~~~~~~s~~ 89 (719)
T 1z68_A 19 FFPNWISG-QEYLHQSA------DNNIVLYNIETGQSYTILSNR--TMKSVNASNYGLSPDRQFVYLESDYSKLWRYSYT 89 (719)
T ss_dssp CCCEESSS-SEEEEECT------TSCEEEEESSSCCEEEEECHH--HHHTTTCSEEEECTTSSEEEEEEEEEECSSSCEE
T ss_pred CccEECCC-CeEEEEcC------CCCEEEEEcCCCcEEEEEccc--cccccceeeEEECCCCCeEEEEecCceeEEeecc
Confidence 36678886 76444432 346899999998876544321 00001256799999997 444322 24
Q ss_pred CeEEEEcCCCceEEEecCCCCCCcccccCccccCeEEEccCc-eEEEEeCCCCeEEEEeCCCC
Q 020019 171 SKIWKVGVKGEFLSIISSPLFTPKEWYKNLVGLNGIVYHPDG-FLIVIHTFSGNLFKIDIVDG 232 (332)
Q Consensus 171 ~~I~~v~~~g~~~~~~~~~~~~~p~~~~~~~~~nGi~~~~dG-~Lyva~~~~~~i~~id~~~~ 232 (332)
+.|+.++.++.... ...... .....++|+||| .|.++. .++|+.+++.++
T Consensus 90 ~~i~~~d~~~g~~~--~~~~l~--------~~~~~~~~SPDG~~la~~~--~~~i~~~~~~~g 140 (719)
T 1z68_A 90 ATYYIYDLSNGEFV--RGNELP--------RPIQYLCWSPVGSKLAYVY--QNNIYLKQRPGD 140 (719)
T ss_dssp EEEEEEETTTTEEC--CSSCCC--------SSBCCEEECSSTTCEEEEE--TTEEEEESSTTS
T ss_pred eEEEEEECCCCccc--cceecC--------cccccceECCCCCEEEEEE--CCeEEEEeCCCC
Confidence 78888887754320 000110 235679999999 777664 568999998876
|
| >2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus} | Back alignment and structure |
|---|
Probab=96.42 E-value=0.047 Score=48.64 Aligned_cols=113 Identities=14% Similarity=0.168 Sum_probs=70.7
Q ss_pred cceEEEEECCCCcEEEEEecCCCCCCCCCccceEECCCCc-EEEEeC----CCCeEEEEcCCC-ceEEEecCCCCCCccc
Q 020019 123 YSAVAAYDLSTWNRLFLTQLSGPSDGKSCADDVTVDAEGN-AYVTDV----TGSKIWKVGVKG-EFLSIISSPLFTPKEW 196 (332)
Q Consensus 123 ~~~l~~~d~~~g~~~~~~~l~~~~~~~~~~ndiavd~dG~-lyvtd~----~~~~I~~v~~~g-~~~~~~~~~~~~~p~~ 196 (332)
...|+.+|.++++.... .....+++.|||+ |+++.. ....|+.++.++ +...+...+
T Consensus 42 ~~~l~~~d~~~~~~~~l----------~~~~~~~~SpDg~~la~~~~~~~~~~~~l~~~~~~~g~~~~l~~~~------- 104 (347)
T 2gop_A 42 ENTIVIENLKNNARRFI----------ENATMPRISPDGKKIAFMRANEEKKVSEIWVADLETLSSKKILEAK------- 104 (347)
T ss_dssp EEEEEEEETTTCCEEEE----------ESCEEEEECTTSSEEEEEEEETTTTEEEEEEEETTTTEEEEEEEES-------
T ss_pred cceEEEEeCCCCceEEc----------ccCCCeEECCCCCEEEEEEeccCCCcceEEEEECCCCceEEEEcCC-------
Confidence 45688999988775433 1234589999996 554432 234699998764 433332211
Q ss_pred ccCccccCeEEEccCc-eEEEEeCC--------------------------CCeEEEEeCCCCCCccceeEEEEecCCCC
Q 020019 197 YKNLVGLNGIVYHPDG-FLIVIHTF--------------------------SGNLFKIDIVDGVGEGEEIKLIRVAGGPL 249 (332)
Q Consensus 197 ~~~~~~~nGi~~~~dG-~Lyva~~~--------------------------~~~i~~id~~~~~~~~~~~~~v~~~g~~~ 249 (332)
. ...++|+||| .|+++... ..+|+.+++.+++ .++.+.. +
T Consensus 105 ----~-~~~~~wspdg~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~----~~~~l~~---~- 171 (347)
T 2gop_A 105 ----N-IRSLEWNEDSRKLLIVGFKRREDEDFIFEDDVPAWFDDLGFFDGEKTTFWIFDTESEE----VIEEFEK---P- 171 (347)
T ss_dssp ----E-EEEEEECTTSSEEEEEEECCCC---------CCCC---------CEEEEEEEETTTTE----EEEEEEE---E-
T ss_pred ----C-ccceeECCCCCEEEEEEccCCCcCCcEEEcccceeecCcccccCccceEEEEECCCCe----EEeeecC---C-
Confidence 1 4688999999 78777532 3578999998762 2143432 1
Q ss_pred CCCCeEEEeCCCeEEEEe
Q 020019 250 SFGDGLELLSPTKLVVAG 267 (332)
Q Consensus 250 ~~pdGi~~~~dG~l~va~ 267 (332)
....+++.+|| ++++.
T Consensus 172 -~~~~~~~spdg-~~~~~ 187 (347)
T 2gop_A 172 -RFSSGIWHRDK-IVVNV 187 (347)
T ss_dssp -TTCEEEEETTE-EEEEE
T ss_pred -CcccccCCCCe-EEEEE
Confidence 44577888888 55543
|
| >4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ... | Back alignment and structure |
|---|
Probab=96.41 E-value=0.067 Score=53.72 Aligned_cols=114 Identities=9% Similarity=0.041 Sum_probs=69.0
Q ss_pred cceEEEeCCCCeEEEEEeCcCCCccceEEEEECCCCcEEEEEecCCCCCCCCCccceEECCCCc-EEEE-eC-------C
Q 020019 99 SLGLVLDHPRNRLLVVAADVFGNKYSAVAAYDLSTWNRLFLTQLSGPSDGKSCADDVTVDAEGN-AYVT-DV-------T 169 (332)
Q Consensus 99 ~~gi~vd~~~g~l~v~~~~~~~~~~~~l~~~d~~~g~~~~~~~l~~~~~~~~~~ndiavd~dG~-lyvt-d~-------~ 169 (332)
...+...++ |.+++.. + +.|..||.++++............-....+++++.|||+ |+++ +. .
T Consensus 19 ~~~~~w~~d-g~~~~~~-~------~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Spdg~~l~~~~~~~~~~r~~~ 90 (740)
T 4a5s_A 19 LYSLRWISD-HEYLYKQ-E------NNILVFNAEYGNSSVFLENSTFDEFGHSINDYSISPDGQFILLEYNYVKQWRHSY 90 (740)
T ss_dssp CCCEEECSS-SEEEEEE-T------TEEEEEETTTCCEEEEECTTTTTTCCSCCCEEEECTTSSEEEEEEEEEECSSSCE
T ss_pred ccccEECCC-CcEEEEc-C------CcEEEEECCCCceEEEEechhhhhhcccccceEECCCCCEEEEEECCeeeEEEcc
Confidence 357788886 7755554 3 468899999998765443211011112346689999997 4443 21 1
Q ss_pred CCeEEEEcCCCceEEEecCCCCCCcccccCccccCeEEEccCc-eEEEEeCCCCeEEEEeCCCC
Q 020019 170 GSKIWKVGVKGEFLSIISSPLFTPKEWYKNLVGLNGIVYHPDG-FLIVIHTFSGNLFKIDIVDG 232 (332)
Q Consensus 170 ~~~I~~v~~~g~~~~~~~~~~~~~p~~~~~~~~~nGi~~~~dG-~Lyva~~~~~~i~~id~~~~ 232 (332)
.+.++.+|.++.....+.. ........+|+||| .|.++. .+.||..+..++
T Consensus 91 ~~~~~~~d~~~~~~~~l~~----------~~~~~~~~~~SPdG~~la~~~--~~~i~~~~~~~~ 142 (740)
T 4a5s_A 91 TASYDIYDLNKRQLITEER----------IPNNTQWVTWSPVGHKLAYVW--NNDIYVKIEPNL 142 (740)
T ss_dssp EEEEEEEETTTTEECCSSC----------CCTTEEEEEECSSTTCEEEEE--TTEEEEESSTTS
T ss_pred ceEEEEEECCCCcEEEccc----------CCCcceeeEECCCCCEEEEEE--CCeEEEEECCCC
Confidence 2677888877543322211 01134578899999 666653 467998888766
|
| >2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=96.32 E-value=0.05 Score=52.63 Aligned_cols=157 Identities=10% Similarity=-0.004 Sum_probs=95.4
Q ss_pred cccceEEcCCCCEEEEEecCCeEEEEECCCCCCCccceeeeEEecccCcCCCccceEE--EeCCCC-eEEEEEeCcCCCc
Q 020019 46 FRECAKWDDSGRRFIVSFLDGGIGQVAVPDDYPPGTVLEEVTLVKDLELTGNGSLGLV--LDHPRN-RLLVVAADVFGNK 122 (332)
Q Consensus 46 ~pegia~d~~g~~~~~~~~~g~I~~vd~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~--vd~~~g-~l~v~~~~~~~~~ 122 (332)
...+++|.+++ .++++..+|.|..+|..++..+ .. .+.... .....++ ..++ + +++++...
T Consensus 268 ~v~sv~~s~~~-~lasgs~DgtV~lWD~~~~~~~---~~--~~~~H~----~~V~sv~~~~s~~-g~~~laS~S~----- 331 (524)
T 2j04_B 268 LITTFDFLSPT-TVVCGFKNGFVAEFDLTDPEVP---SF--YDQVHD----SYILSVSTAYSDF-EDTVVSTVAV----- 331 (524)
T ss_dssp CEEEEEESSSS-EEEEEETTSEEEEEETTBCSSC---SE--EEECSS----SCEEEEEEECCTT-SCCEEEEEET-----
T ss_pred CEEEEEecCCC-eEEEEeCCCEEEEEECCCCCCc---eE--Eeeccc----ccEEEEEEEcCCC-CCeEEEEecc-----
Confidence 44568888764 5666677899999998755421 11 122111 2456773 4553 6 65555432
Q ss_pred cceEEEEECCCCcEEEEEecCCCCCCCCCccceEECCCCcEEEEeCCCCeEEEEcCC-Cce-EEEecCCCCCCcccccCc
Q 020019 123 YSAVAAYDLSTWNRLFLTQLSGPSDGKSCADDVTVDAEGNAYVTDVTGSKIWKVGVK-GEF-LSIISSPLFTPKEWYKNL 200 (332)
Q Consensus 123 ~~~l~~~d~~~g~~~~~~~l~~~~~~~~~~ndiavd~dG~lyvtd~~~~~I~~v~~~-g~~-~~~~~~~~~~~p~~~~~~ 200 (332)
.+.+..||+++++......-. . .......+++.|+|..+++-...+.|..++.. ++. ..+... .
T Consensus 332 D~tvklWD~~~~~~~~~~~~~--~-~~~~v~~v~fsp~~~~l~s~~~d~tv~lwd~~~~~~~~~l~gH-----------~ 397 (524)
T 2j04_B 332 DGYFYIFNPKDIATTKTTVSR--F-RGSNLVPVVYCPQIYSYIYSDGASSLRAVPSRAAFAVHPLVSR-----------E 397 (524)
T ss_dssp TSEEEEECGGGHHHHCEEEEE--C-SCCSCCCEEEETTTTEEEEECSSSEEEEEETTCTTCCEEEEEC-----------S
T ss_pred CCeEEEEECCCCCcccccccc--c-ccCcccceEeCCCcCeEEEeCCCCcEEEEECcccccceeeecC-----------C
Confidence 456889999876543222110 0 01224679999999888887777777777754 332 222221 1
Q ss_pred cccCeEEEccCceEEEEeCCCCeEEEEeCCCC
Q 020019 201 VGLNGIVYHPDGFLIVIHTFSGNLFKIDIVDG 232 (332)
Q Consensus 201 ~~~nGi~~~~dG~Lyva~~~~~~i~~id~~~~ 232 (332)
...+.|+|+|+|.++++-...++|..+++...
T Consensus 398 ~~V~sva~Sp~g~~l~Sgs~Dgtv~lwd~~~~ 429 (524)
T 2j04_B 398 TTITAIGVSRLHPMVLAGSADGSLIITNAARR 429 (524)
T ss_dssp SCEEEEECCSSCCBCEEEETTTEEECCBSCSS
T ss_pred CceEEEEeCCCCCeEEEEECCCEEEEEechHh
Confidence 24579999999965566677888877776543
|
| >2w18_A PALB2, fancn, partner and localizer of BRCA2; fanconi anemia, homologous recomination, polymorphism, phosphoprotein, beta-propeller, WD40, nucleus; 1.90A {Homo sapiens} PDB: 3eu7_A | Back alignment and structure |
|---|
Probab=95.80 E-value=1.1 Score=40.87 Aligned_cols=139 Identities=10% Similarity=0.029 Sum_probs=73.5
Q ss_pred CeEEEEEeCcCCCccceEEEEECCCCcEEEEEecCCCCCCCCCccceEECCCCcEEEEeC------------CCCeEEEE
Q 020019 109 NRLLVVAADVFGNKYSAVAAYDLSTWNRLFLTQLSGPSDGKSCADDVTVDAEGNAYVTDV------------TGSKIWKV 176 (332)
Q Consensus 109 g~l~v~~~~~~~~~~~~l~~~d~~~g~~~~~~~l~~~~~~~~~~ndiavd~dG~lyvtd~------------~~~~I~~v 176 (332)
+.++++... .+.|.+||+++|+....+.- ..........+++.|+|.+.++-+ ..+.|...
T Consensus 193 ~~~LaSgS~-----D~TIkIWDl~TGk~l~tL~g--~~~~v~~v~~vafSpdG~~lvs~s~~~~~w~laSGs~D~tIklW 265 (356)
T 2w18_A 193 QEALLGTTI-----MNNIVIWNLKTGQLLKKMHI--DDSYQASVCHKAYSEMGLLFIVLSHPCAKESESLRSPVFQLIVI 265 (356)
T ss_dssp TTEEEEEET-----TSEEEEEETTTCCEEEEEEC--CC---CCCEEEEEEETTEEEEEEC------------CCEEEEEE
T ss_pred CceEEEecC-----CCcEEEEECCCCcEEEEEcC--CCcceeeeEEEEECCCCCEEEEeccCCCcceeeccCCCcEEEEE
Confidence 566666442 45688999999997765532 111123455668999997765533 22344445
Q ss_pred cCC-CceEEEecCCCCCCcccccCccccCeEEEccCceEEEEeCCCCeEEEEeCCCCCCccceeEEEEecCCCCCCC-Ce
Q 020019 177 GVK-GEFLSIISSPLFTPKEWYKNLVGLNGIVYHPDGFLIVIHTFSGNLFKIDIVDGVGEGEEIKLIRVAGGPLSFG-DG 254 (332)
Q Consensus 177 ~~~-g~~~~~~~~~~~~~p~~~~~~~~~nGi~~~~dG~Lyva~~~~~~i~~id~~~~~~~~~~~~~v~~~g~~~~~p-dG 254 (332)
+++ |+......- .+ |. +..+ .=+..+.+|.+.++-..+++|.-+|+.+++ .+..+. + +...+ ..
T Consensus 266 d~~tgk~l~v~~~-~~--p~---Gh~~-~~lsg~~sg~~lASgS~DgTIkIWDl~tGk----~l~tL~--g-H~~~vvs~ 331 (356)
T 2w18_A 266 NPKTTLSVGVMLY-CL--PP---GQAG-RFLEGDVKDHCAAAILTSGTIAIWDLLLGQ----CTALLP--P-VSDQHWSF 331 (356)
T ss_dssp ETTTTEEEEEEEE-CC--CT---TCCC-CEEEEEEETTEEEEEETTSCEEEEETTTCS----EEEEEC--C-C--CCCCE
T ss_pred ECCCCEEEEEEEe-ec--cC---CCcc-eeEccccCCCEEEEEcCCCcEEEEECCCCc----EEEEec--C-CCCCeEEE
Confidence 554 332221100 00 00 0000 011222225456666667888889998873 344443 1 22222 35
Q ss_pred EEEeCCCeEEEEeC
Q 020019 255 LELLSPTKLVVAGN 268 (332)
Q Consensus 255 i~~~~dG~l~va~~ 268 (332)
+++.|||+++++..
T Consensus 332 vafSPDG~~LaSGS 345 (356)
T 2w18_A 332 VKWSGTDSHLLAGQ 345 (356)
T ss_dssp EEECSSSSEEEEEC
T ss_pred EEECCCCCEEEEEE
Confidence 88999999888764
|
| >1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A | Back alignment and structure |
|---|
Probab=95.74 E-value=1.2 Score=44.03 Aligned_cols=78 Identities=10% Similarity=0.001 Sum_probs=48.5
Q ss_pred ceEEcCCCCEEEEE-ecCCeEEEEECCCCCCCccceeeeEEecccCcC-CCccceEEEeCCCCeEEEEEe-CcCCCccce
Q 020019 49 CAKWDDSGRRFIVS-FLDGGIGQVAVPDDYPPGTVLEEVTLVKDLELT-GNGSLGLVLDHPRNRLLVVAA-DVFGNKYSA 125 (332)
Q Consensus 49 gia~d~~g~~~~~~-~~~g~I~~vd~~~~~~~~~~~~~~~~~~~~~~~-~~~~~gi~vd~~~g~l~v~~~-~~~~~~~~~ 125 (332)
+.++..+|++|+.. .....++++|+.+.++ ..-+.+. .+.-.+.++-++ |++||..+ .........
T Consensus 247 ~~~~~~~g~lyv~GG~~~~~v~~yd~~t~~W----------~~~~~~~~~R~~~s~~~~~d-g~iyv~GG~~~~~~~~~~ 315 (656)
T 1k3i_A 247 GISMDGNGQIVVTGGNDAKKTSLYDSSSDSW----------IPGPDMQVARGYQSSATMSD-GRVFTIGGSWSGGVFEKN 315 (656)
T ss_dssp EEEECTTSCEEEECSSSTTCEEEEEGGGTEE----------EECCCCSSCCSSCEEEECTT-SCEEEECCCCCSSSCCCC
T ss_pred cccCCCCCCEEEeCCCCCCceEEecCcCCce----------eECCCCCccccccceEEecC-CeEEEEeCcccCCccccc
Confidence 46777889998877 4556899999886653 2222222 123345566554 89999864 111112356
Q ss_pred EEEEECCCCcEE
Q 020019 126 VAAYDLSTWNRL 137 (332)
Q Consensus 126 l~~~d~~~g~~~ 137 (332)
+.+||+++++..
T Consensus 316 ~e~yd~~t~~W~ 327 (656)
T 1k3i_A 316 GEVYSPSSKTWT 327 (656)
T ss_dssp EEEEETTTTEEE
T ss_pred ceEeCCCCCcce
Confidence 889999887644
|
| >2xbg_A YCF48-like protein; photosynthesis, photosystem II, beta-propeller, assembly FAC; 1.50A {Thermosynechococcus elongatus} | Back alignment and structure |
|---|
Probab=95.65 E-value=1.1 Score=39.91 Aligned_cols=187 Identities=14% Similarity=0.073 Sum_probs=97.2
Q ss_pred cceEEcCCCCEEEEEecCCeEEEEECCCCCCCccceeeeEEecccCcCCCccceEEEeCCCCeEEEEEeCcCCCccceEE
Q 020019 48 ECAKWDDSGRRFIVSFLDGGIGQVAVPDDYPPGTVLEEVTLVKDLELTGNGSLGLVLDHPRNRLLVVAADVFGNKYSAVA 127 (332)
Q Consensus 48 egia~d~~g~~~~~~~~~g~I~~vd~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~vd~~~g~l~v~~~~~~~~~~~~l~ 127 (332)
..+++.+++++|++. ..+.|++-+ +.++. -+ ... .+. .....+++++++ +++|++... +.++
T Consensus 125 ~~i~~~~~~~~~~~~-~~g~v~~S~-DgG~t----W~--~~~-~~~--~~~~~~~~~~~~-~~~~~~g~~------G~~~ 186 (327)
T 2xbg_A 125 RLIKALGNGSAEMIT-NVGAIYRTK-DSGKN----WQ--ALV-QEA--IGVMRNLNRSPS-GEYVAVSSR------GSFY 186 (327)
T ss_dssp EEEEEEETTEEEEEE-TTCCEEEES-STTSS----EE--EEE-CSC--CCCEEEEEECTT-SCEEEEETT------SSEE
T ss_pred EEEEEECCCCEEEEe-CCccEEEEc-CCCCC----CE--Eee-cCC--CcceEEEEEcCC-CcEEEEECC------CcEE
Confidence 345555666666544 356677643 43431 01 111 111 124578888885 888876542 3455
Q ss_pred EEECCCCcEEEEEecCCCCCCCCCccceEECCCCcEEEEeCCCCeEEEEcCC-CceEEEecCCCCCCcccccCccccCeE
Q 020019 128 AYDLSTWNRLFLTQLSGPSDGKSCADDVTVDAEGNAYVTDVTGSKIWKVGVK-GEFLSIISSPLFTPKEWYKNLVGLNGI 206 (332)
Q Consensus 128 ~~d~~~g~~~~~~~l~~~~~~~~~~ndiavd~dG~lyvtd~~~~~I~~v~~~-g~~~~~~~~~~~~~p~~~~~~~~~nGi 206 (332)
+-+-..|+-...... +. .....+++++++|++|+... .+.+++-+.+ |+.-.....+.+ + .......|
T Consensus 187 ~S~d~gG~tW~~~~~--~~--~~~~~~~~~~~~g~~~~~~~-~G~~~~s~~D~G~tW~~~~~~~~--~----~~~~~~~v 255 (327)
T 2xbg_A 187 STWEPGQTAWEPHNR--TT--SRRLHNMGFTPDGRLWMIVN-GGKIAFSDPDNSENWGELLSPLR--R----NSVGFLDL 255 (327)
T ss_dssp EEECTTCSSCEEEEC--CS--SSCEEEEEECTTSCEEEEET-TTEEEEEETTEEEEECCCBCTTS--S----CCSCEEEE
T ss_pred EEeCCCCCceeECCC--CC--CCccceeEECCCCCEEEEeC-CceEEEecCCCCCeeEeccCCcc--c----CCcceEEE
Confidence 433221332222222 11 24567899999999987754 4667765445 442211111100 0 11235678
Q ss_pred EEccCceEEEEeCCCCeEEEEeCCCCCCccceeEEEEecCCCC-CCCCeEEEeCCCeEEEEeCCc
Q 020019 207 VYHPDGFLIVIHTFSGNLFKIDIVDGVGEGEEIKLIRVAGGPL-SFGDGLELLSPTKLVVAGNPS 270 (332)
Q Consensus 207 ~~~~dG~Lyva~~~~~~i~~id~~~~~~~~~~~~~v~~~g~~~-~~pdGi~~~~dG~l~va~~~~ 270 (332)
++.+++.+|++.. .+.|++ ..+.++ .-+.+... ... .....+++.+++++|++.+..
T Consensus 256 ~~~~~~~~~~~g~-~g~i~~-S~DgG~----tW~~~~~~-~~~~~~~~~v~~~~~~~~~~~G~~G 313 (327)
T 2xbg_A 256 AYRTPNEVWLAGG-AGALLC-SQDGGQ----TWQQDVDV-KKVPSNFYKILFFSPDQGFILGQKG 313 (327)
T ss_dssp EESSSSCEEEEES-TTCEEE-ESSTTS----SCEECGGG-TTSSSCCCEEEEEETTEEEEECSTT
T ss_pred EecCCCEEEEEeC-CCeEEE-eCCCCc----ccEEcCcc-CCCCCCeEEEEEECCCceEEEcCCc
Confidence 8888888888755 455653 445442 22222211 111 234678887778888887664
|
| >3sbq_A Nitrous-oxide reductase; beta-propeller, cupredoxin domain, copper-contain periplasmic, oxidoreductase; 1.70A {Pseudomonas stutzeri} PDB: 3sbp_A 3sbr_A 1qni_A | Back alignment and structure |
|---|
Probab=95.58 E-value=1.2 Score=43.06 Aligned_cols=195 Identities=12% Similarity=0.092 Sum_probs=110.1
Q ss_pred CCCEEEEE-ecCCeEEEEECCCCCCCccceeeeEEecccCcCCCccceEEEe--CCCCeEEEEEeCcC--CC--------
Q 020019 55 SGRRFIVS-FLDGGIGQVAVPDDYPPGTVLEEVTLVKDLELTGNGSLGLVLD--HPRNRLLVVAADVF--GN-------- 121 (332)
Q Consensus 55 ~g~~~~~~-~~~g~I~~vd~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~vd--~~~g~l~v~~~~~~--~~-------- 121 (332)
||+.+|.+ -.+.||.||+.+.-++ . ..+.-|... +..|+++- |+++.++......- ++
T Consensus 141 DGrylfiNdkan~RvAri~l~~~~~-----d--~Ii~iPn~~--~~Hg~~~~~~p~T~yv~~~~e~~~P~pndg~~~~~~ 211 (638)
T 3sbq_A 141 DGKYLFINDKANSRVARIRLDIMKC-----D--KMITVPNVQ--AIHGLRLQKVPHTKYVFANAEFIIPHPNDGKVFDLQ 211 (638)
T ss_dssp EEEEEEEEETTTTEEEEEETTTTEE-----E--EEEECTTCS--CEEEEEECCSSBCCEEEEEECSCEESSCSSSCCCTT
T ss_pred eeEEEEEecCCCcceEEEECCcEee-----c--eeEeCCCCc--CcccccccccCCccEEEecceeeccCCCCCcccccC
Confidence 46656655 5678999999987653 2 344434433 56788876 44454443332210 01
Q ss_pred ---ccceEEEEECCCCcEEEEEecCCCCCCCCCccceEECCCCcEEEEeCC---------------CCeEEEEcC-----
Q 020019 122 ---KYSAVAAYDLSTWNRLFLTQLSGPSDGKSCADDVTVDAEGNAYVTDVT---------------GSKIWKVGV----- 178 (332)
Q Consensus 122 ---~~~~l~~~d~~~g~~~~~~~l~~~~~~~~~~ndiavd~dG~lyvtd~~---------------~~~I~~v~~----- 178 (332)
+.+....+|.++-++.+.+.++ ..+..+..|++|..-++.+. ...+..++-
T Consensus 212 ~~~~y~~f~~iD~~tm~v~~Qv~v~------gnld~~~~~~~g~~af~t~yNsE~~~~l~em~~~e~D~~~vfn~~~ie~ 285 (638)
T 3sbq_A 212 DENSYTMYNAIDAETMEMAFQVIVD------GNLDNTDADYTGRFAAATCYNSEKAFDLGGMMRNERDWVVVFDIHAVEA 285 (638)
T ss_dssp STTEEEEEEEEETTTCSEEEEEEES------SCCCCEEECSSSSEEEEEESCTTCCSSHHHHTCSSCEEEEEEEHHHHHH
T ss_pred ChhhceEEEEEcCCccEEEEEEEcC------CChhhcCCCCCCCEEEEeeeccccCcChhhcCcccccEEEEecHHHHHH
Confidence 1122335687777776555552 24566788999875554322 123334331
Q ss_pred ---CCceEEE-------ecCCC----CC-CcccccCccccCeEEEccCc-eEEEEeCCCCeEEEEeCCC------CCC--
Q 020019 179 ---KGEFLSI-------ISSPL----FT-PKEWYKNLVGLNGIVYHPDG-FLIVIHTFSGNLFKIDIVD------GVG-- 234 (332)
Q Consensus 179 ---~g~~~~~-------~~~~~----~~-~p~~~~~~~~~nGi~~~~dG-~Lyva~~~~~~i~~id~~~------~~~-- 234 (332)
+|+.... ++... .. --..+|....|.|+-++||| +++++.-.+.++..++.+. .+.
T Consensus 286 ~vk~G~~~~~~g~gv~ViD~~~~~~~~~~~~~~iP~pksPHGv~vsPDGkyi~v~GKLsptvtV~d~~k~~~~~~~k~~~ 365 (638)
T 3sbq_A 286 AVKAGDFITLGDSKTPVLDGRKKDGKDSKFTRYVPVPKNPHGCNTSSDGKYFIAAGKLSPTCSMIAIDKLPDLFAGKLAD 365 (638)
T ss_dssp HHHTTCCBCCTTCCCCEEECSCBTTBCCSSEEEEEESSSCCCEEECTTSCEEEEECTTSSBEEEEEGGGHHHHHTTCCSC
T ss_pred HHhcCCeEEECCCCeeEEccccccccCCceEEEEeCCCCCcceeeCCCCCEEEEcCCCCCeEEEEEeehhhhhhhccccC
Confidence 2332211 10000 00 00012345689999999999 9999999999998888773 111
Q ss_pred -ccceeEEEEecCCCCCCCCeEEEeCCCeEEEEeC
Q 020019 235 -EGEEIKLIRVAGGPLSFGDGLELLSPTKLVVAGN 268 (332)
Q Consensus 235 -~~~~~~~v~~~g~~~~~pdGi~~~~dG~l~va~~ 268 (332)
+...+..+++ .-+|--.++|++|+.|.+-.
T Consensus 366 ~~~~~~ae~e~----GlGPlHt~Fd~~G~aYTtlf 396 (638)
T 3sbq_A 366 PRDVIVGEPEL----GLGPLHTTFDGRGNAYTTLF 396 (638)
T ss_dssp GGGGEEECCBC----CSCEEEEEECSSSEEEEEET
T ss_pred cccceEeeccC----CCcccEEEECCCCceEeeee
Confidence 0111211221 14788999999999999963
|
| >3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A* | Back alignment and structure |
|---|
Probab=95.47 E-value=0.74 Score=45.74 Aligned_cols=156 Identities=12% Similarity=0.119 Sum_probs=86.9
Q ss_pred cceEEcCCCCEEEEE-e---cCCeEEEEECCCCCCCccceeeeEEecccCcCCCccceEEEeCCCCeEEEEEeCcCCCcc
Q 020019 48 ECAKWDDSGRRFIVS-F---LDGGIGQVAVPDDYPPGTVLEEVTLVKDLELTGNGSLGLVLDHPRNRLLVVAADVFGNKY 123 (332)
Q Consensus 48 egia~d~~g~~~~~~-~---~~g~I~~vd~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~vd~~~g~l~v~~~~~~~~~~ 123 (332)
.++.+++||+.++.. . ...+|+.++.+++.. +...+.. .. . ..... ++++.+++|+..+... ..
T Consensus 237 ~~~~~SpDg~~l~~~~~~~~~~~~i~~~d~~~~~~-----~~~~l~~-~~-~--~~~~~-~~~~g~~l~~~t~~~~--~~ 304 (693)
T 3iuj_A 237 VGATVTEDDRFLLISAANSTSGNRLYVKDLSQENA-----PLLTVQG-DL-D--ADVSL-VDNKGSTLYLLTNRDA--PN 304 (693)
T ss_dssp EEEEECTTSCEEEEEEESSSSCCEEEEEETTSTTC-----CCEEEEC-SS-S--SCEEE-EEEETTEEEEEECTTC--TT
T ss_pred EEEEEcCCCCEEEEEEccCCCCcEEEEEECCCCCC-----ceEEEeC-CC-C--ceEEE-EeccCCEEEEEECCCC--CC
Confidence 367899999866544 2 235899999876531 1112322 11 1 11122 3444478888765321 24
Q ss_pred ceEEEEECCCCcE---EEEEecCCCCCCCCCccceEECCCCc-EEEEeCCC--CeEEEEcCCCceEEEecCCCCCCcccc
Q 020019 124 SAVAAYDLSTWNR---LFLTQLSGPSDGKSCADDVTVDAEGN-AYVTDVTG--SKIWKVGVKGEFLSIISSPLFTPKEWY 197 (332)
Q Consensus 124 ~~l~~~d~~~g~~---~~~~~l~~~~~~~~~~ndiavd~dG~-lyvtd~~~--~~I~~v~~~g~~~~~~~~~~~~~p~~~ 197 (332)
.+|+.+|+++++. ...+. .. .... .+.++|+ |+++.... ..|+.++.+|+....+..+.
T Consensus 305 ~~l~~~d~~~~~~~~~~~l~~----~~-~~~~---~~s~~g~~lv~~~~~~g~~~l~~~d~~g~~~~~l~~p~------- 369 (693)
T 3iuj_A 305 RRLVTVDAANPGPAHWRDLIP----ER-QQVL---TVHSGSGYLFAEYMVDATARVEQFDYEGKRVREVALPG------- 369 (693)
T ss_dssp CEEEEEETTSCCGGGCEEEEC----CC-SSCE---EEEEETTEEEEEEEETTEEEEEEECTTSCEEEEECCSS-------
T ss_pred CEEEEEeCCCCCccccEEEec----CC-CCEE---EEEEECCEEEEEEEECCeeEEEEEECCCCeeEEeecCC-------
Confidence 6799999987653 22221 11 1122 4555554 65554433 47899998877554432111
Q ss_pred cCccccCeEEEccCc-eEEEEeCC---CCeEEEEeCCCC
Q 020019 198 KNLVGLNGIVYHPDG-FLIVIHTF---SGNLFKIDIVDG 232 (332)
Q Consensus 198 ~~~~~~nGi~~~~dG-~Lyva~~~---~~~i~~id~~~~ 232 (332)
.....++.+++|+ .|++.-.. .++|+++++.++
T Consensus 370 --~~~~~~~~~~~d~~~l~~~~ss~~tP~~l~~~d~~~g 406 (693)
T 3iuj_A 370 --LGSVSGFNGKHDDPALYFGFENYAQPPTLYRFEPKSG 406 (693)
T ss_dssp --SSEEEECCCCTTCSCEEEEEECSSSCCEEEEECTTTC
T ss_pred --CceEEeeecCCCCCEEEEEecCCCCCCEEEEEECCCC
Confidence 1122355567787 77766432 378999999876
|
| >1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A | Back alignment and structure |
|---|
Probab=95.36 E-value=1.8 Score=42.57 Aligned_cols=120 Identities=10% Similarity=0.046 Sum_probs=70.2
Q ss_pred cccceEEcC-CCCEEEEE-ecC----------CeEEEEECCCCCCCccceeeeEEecccCcCCCccceEEEeCCCCeEEE
Q 020019 46 FRECAKWDD-SGRRFIVS-FLD----------GGIGQVAVPDDYPPGTVLEEVTLVKDLELTGNGSLGLVLDHPRNRLLV 113 (332)
Q Consensus 46 ~pegia~d~-~g~~~~~~-~~~----------g~I~~vd~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~vd~~~g~l~v 113 (332)
.+...++.+ +|++|+.. ... ..++++|+.++++. .+...|........+.++..+ |+||+
T Consensus 187 ~~~~~av~~~~g~l~v~GG~~~~~~~~~~~~~~~~~~yd~~t~~w~-------~~~~~~~~~~~~~~~~~~~~~-g~lyv 258 (656)
T 1k3i_A 187 VPAAAAIEPTSGRVLMWSSYRNDAFGGSPGGITLTSSWDPSTGIVS-------DRTVTVTKHDMFCPGISMDGN-GQIVV 258 (656)
T ss_dssp CCSEEEEETTTTEEEEEEECCCTTTCSCCCSEEEEEEECTTTCCBC-------CCEEEECSCCCSSCEEEECTT-SCEEE
T ss_pred CceeEEEEecCCEEEEEecccccccccCCCCeEEEEEEeCCCCcEE-------eCcccCCCCCCccccccCCCC-CCEEE
Confidence 455777777 78888765 211 15889999877652 111111111112345666664 89999
Q ss_pred EEeCcCCCccceEEEEECCCCcEEEEEecCCCCCCCCCccceEECCCCcEEEEeC------CCCeEEEEcCCCc
Q 020019 114 VAADVFGNKYSAVAAYDLSTWNRLFLTQLSGPSDGKSCADDVTVDAEGNAYVTDV------TGSKIWKVGVKGE 181 (332)
Q Consensus 114 ~~~~~~~~~~~~l~~~d~~~g~~~~~~~l~~~~~~~~~~ndiavd~dG~lyvtd~------~~~~I~~v~~~g~ 181 (332)
..+.. ...+.+||+++++......++ . ...-..+++-++|+||+.-. ....++++|+...
T Consensus 259 ~GG~~----~~~v~~yd~~t~~W~~~~~~~--~--~R~~~s~~~~~dg~iyv~GG~~~~~~~~~~~e~yd~~t~ 324 (656)
T 1k3i_A 259 TGGND----AKKTSLYDSSSDSWIPGPDMQ--V--ARGYQSSATMSDGRVFTIGGSWSGGVFEKNGEVYSPSSK 324 (656)
T ss_dssp ECSSS----TTCEEEEEGGGTEEEECCCCS--S--CCSSCEEEECTTSCEEEECCCCCSSSCCCCEEEEETTTT
T ss_pred eCCCC----CCceEEecCcCCceeECCCCC--c--cccccceEEecCCeEEEEeCcccCCcccccceEeCCCCC
Confidence 85421 236899999877544322221 1 12234566767899998643 1256888998744
|
| >2xbg_A YCF48-like protein; photosynthesis, photosystem II, beta-propeller, assembly FAC; 1.50A {Thermosynechococcus elongatus} | Back alignment and structure |
|---|
Probab=95.28 E-value=1.5 Score=39.05 Aligned_cols=189 Identities=8% Similarity=0.012 Sum_probs=101.7
Q ss_pred cccceEEcCCCCEEEEEecCCeEEEEECCCCC-CCccceeeeEEecccCcCCCccceEEEeCCCCeEEEEEeCcCCCccc
Q 020019 46 FRECAKWDDSGRRFIVSFLDGGIGQVAVPDDY-PPGTVLEEVTLVKDLELTGNGSLGLVLDHPRNRLLVVAADVFGNKYS 124 (332)
Q Consensus 46 ~pegia~d~~g~~~~~~~~~g~I~~vd~~~~~-~~~~~~~~~~~~~~~~~~~~~~~gi~vd~~~g~l~v~~~~~~~~~~~ 124 (332)
...++.+.+++..|++.. .|.|++-. +.++ + + ..............+|.+++ +++|++.. .+
T Consensus 37 ~~~~v~~~~~~~~~~~G~-~g~i~~s~-DgG~tW-----~--~~~~~~~~~~~~~~~i~~~~--~~~~~~g~------~g 99 (327)
T 2xbg_A 37 TILDMSFIDRHHGWLVGV-NATLMETR-DGGQTW-----E--PRTLVLDHSDYRFNSVSFQG--NEGWIVGE------PP 99 (327)
T ss_dssp CEEEEEESSSSCEEEEET-TTEEEEES-STTSSC-----E--ECCCCCSCCCCEEEEEEEET--TEEEEEEE------TT
T ss_pred cEEEEEECCCCcEEEEcC-CCeEEEeC-CCCCCC-----e--ECCCCCCCCCccEEEEEecC--CeEEEEEC------CC
Confidence 556788877788787543 56777653 4443 2 1 11100001112457888885 68888753 23
Q ss_pred eEEEEECCCCcEEEEEecCCCCCCCCCccceEECCCCcEEEEeCCCCeEEEEcCCCceEEEecCCCCCCcccccCccccC
Q 020019 125 AVAAYDLSTWNRLFLTQLSGPSDGKSCADDVTVDAEGNAYVTDVTGSKIWKVGVKGEFLSIISSPLFTPKEWYKNLVGLN 204 (332)
Q Consensus 125 ~l~~~d~~~g~~~~~~~l~~~~~~~~~~ndiavd~dG~lyvtd~~~~~I~~v~~~g~~~~~~~~~~~~~p~~~~~~~~~n 204 (332)
.|++ ..+.|+-....... ......+.++++.+++++|+... .+.|++-+-.|+.=.....+. .....
T Consensus 100 ~i~~-S~DgG~tW~~~~~~--~~~~~~~~~i~~~~~~~~~~~~~-~g~v~~S~DgG~tW~~~~~~~---------~~~~~ 166 (327)
T 2xbg_A 100 IMLH-TTDGGQSWSQIPLD--PKLPGSPRLIKALGNGSAEMITN-VGAIYRTKDSGKNWQALVQEA---------IGVMR 166 (327)
T ss_dssp EEEE-ESSTTSSCEECCCC--TTCSSCEEEEEEEETTEEEEEET-TCCEEEESSTTSSEEEEECSC---------CCCEE
T ss_pred eEEE-ECCCCCCceECccc--cCCCCCeEEEEEECCCCEEEEeC-CccEEEEcCCCCCCEEeecCC---------CcceE
Confidence 4543 33334422222211 10012356787777788887654 567888665565322222111 12346
Q ss_pred eEEEccCceEEEEeCCCCeEEEEeCCCCCCccceeEEEEecCCCCCCCCeEEEeCCCeEEEEeCCce
Q 020019 205 GIVYHPDGFLIVIHTFSGNLFKIDIVDGVGEGEEIKLIRVAGGPLSFGDGLELLSPTKLVVAGNPSA 271 (332)
Q Consensus 205 Gi~~~~dG~Lyva~~~~~~i~~id~~~~~~~~~~~~~v~~~g~~~~~pdGi~~~~dG~l~va~~~~~ 271 (332)
++++++++.+|+... .+.+++-+-..+. .-+.+..+ .-.....++++++|++|++.....
T Consensus 167 ~~~~~~~~~~~~~g~-~G~~~~S~d~gG~----tW~~~~~~--~~~~~~~~~~~~~g~~~~~~~~G~ 226 (327)
T 2xbg_A 167 NLNRSPSGEYVAVSS-RGSFYSTWEPGQT----AWEPHNRT--TSRRLHNMGFTPDGRLWMIVNGGK 226 (327)
T ss_dssp EEEECTTSCEEEEET-TSSEEEEECTTCS----SCEEEECC--SSSCEEEEEECTTSCEEEEETTTE
T ss_pred EEEEcCCCcEEEEEC-CCcEEEEeCCCCC----ceeECCCC--CCCccceeEECCCCCEEEEeCCce
Confidence 889999887776543 5668776432231 22223322 113445788888999999876543
|
| >3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A* | Back alignment and structure |
|---|
Probab=95.13 E-value=2.8 Score=41.46 Aligned_cols=120 Identities=12% Similarity=0.134 Sum_probs=66.4
Q ss_pred ccceEEEeCCCCeEEEEEeCcCCCccceEEEEECCCCcEEEEEecCCCCCCCCCccceEECCCCc-EEEEeCC-------
Q 020019 98 GSLGLVLDHPRNRLLVVAADVFGNKYSAVAAYDLSTWNRLFLTQLSGPSDGKSCADDVTVDAEGN-AYVTDVT------- 169 (332)
Q Consensus 98 ~~~gi~vd~~~g~l~v~~~~~~~~~~~~l~~~d~~~g~~~~~~~l~~~~~~~~~~ndiavd~dG~-lyvtd~~------- 169 (332)
...++.+.|+ |+..+-..+..+.....|+++|+++|+.... .+. ......+++. ||+ ||++...
T Consensus 130 ~l~~~~~SpD-g~~lAy~~~~~G~~~~~i~v~dl~tg~~~~~-~~~-----~~k~~~~~Ws-Dg~~l~y~~~~~~~~~~~ 201 (693)
T 3iuj_A 130 ALDQLSFSRD-GRILAYSLSLAGSDWREIHLMDVESKQPLET-PLK-----DVKFSGISWL-GNEGFFYSSYDKPDGSEL 201 (693)
T ss_dssp EEEEEEECTT-SSEEEEEEECSSCCEEEEEEEETTTCSEEEE-EEE-----EEESCCCEEE-TTTEEEEEESSCCC----
T ss_pred EEEEEEECCC-CCEEEEEEecCCCceEEEEEEECCCCCCCcc-ccC-----CceeccEEEe-CCCEEEEEEecCcccccc
Confidence 4568899997 6633222221112335789999999986542 221 0112346777 774 6665432
Q ss_pred -----CCeEEEEcCCC---ceEEEecCCCCCCcccccCccccCeEEEccCc-eEEEEeCC---CCeEEEEeCCCC
Q 020019 170 -----GSKIWKVGVKG---EFLSIISSPLFTPKEWYKNLVGLNGIVYHPDG-FLIVIHTF---SGNLFKIDIVDG 232 (332)
Q Consensus 170 -----~~~I~~v~~~g---~~~~~~~~~~~~~p~~~~~~~~~nGi~~~~dG-~Lyva~~~---~~~i~~id~~~~ 232 (332)
...|++.+... +...+...+.. ......++.+++|| .|+++... .+.||.++++++
T Consensus 202 ~~~~~~~~v~~~~lgt~~~~~~~v~~~~~~-------~~~~~~~~~~SpDg~~l~~~~~~~~~~~~i~~~d~~~~ 269 (693)
T 3iuj_A 202 SARTDQHKVYFHRLGTAQEDDRLVFGAIPA-------QHHRYVGATVTEDDRFLLISAANSTSGNRLYVKDLSQE 269 (693)
T ss_dssp ---CCCCEEEEEETTSCGGGCEEEESCSGG-------GCCSEEEEEECTTSCEEEEEEESSSSCCEEEEEETTST
T ss_pred cccCCCcEEEEEECCCCcccceEEEecCCC-------CCeEEEEEEEcCCCCEEEEEEccCCCCcEEEEEECCCC
Confidence 24577776542 11222221110 00123478899999 77766542 358999998865
|
| >2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens} | Back alignment and structure |
|---|
Probab=95.09 E-value=0.014 Score=53.63 Aligned_cols=141 Identities=13% Similarity=0.085 Sum_probs=60.3
Q ss_pred CCEEEEEecCCeEEEEECCCCCCCccceeeeEEecccCcCCCccceEEEeCCCCeEEEEEeCcCCCccceEEEEECCCCc
Q 020019 56 GRRFIVSFLDGGIGQVAVPDDYPPGTVLEEVTLVKDLELTGNGSLGLVLDHPRNRLLVVAADVFGNKYSAVAAYDLSTWN 135 (332)
Q Consensus 56 g~~~~~~~~~g~I~~vd~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~vd~~~g~l~v~~~~~~~~~~~~l~~~d~~~g~ 135 (332)
+..+|+...++.|+.+|..+++. .|....+ ......+..+ |++|++.. ..+.|+.||.++|+
T Consensus 9 ~~~v~~gs~dg~v~a~d~~tG~~--------~W~~~~~----~~~s~p~~~~-g~~~v~~s-----~dg~l~a~d~~tG~ 70 (369)
T 2hz6_A 9 ETLLFVSTLDGSLHAVSKRTGSI--------KWTLKED----PVLQVPTHVE-EPAFLPDP-----NDGSLYTLGSKNNE 70 (369)
T ss_dssp TTEEEEEETTSEEEEEETTTCCE--------EEEEECC----CSCCCC------CCEEECT-----TTCCEEEC-----C
T ss_pred CCEEEEEcCCCEEEEEECCCCCE--------EEEecCC----CceecceEcC-CCEEEEeC-----CCCEEEEEECCCCc
Confidence 34444554578999999888862 2321111 1111112232 66777642 13568999999888
Q ss_pred EEEEEecCCCCCCCCCccceEECCCCcEEEEeCCCCeEEEEcCC-CceEEEecCCCCCCcccccCccccCeEEEccCc-e
Q 020019 136 RLFLTQLSGPSDGKSCADDVTVDAEGNAYVTDVTGSKIWKVGVK-GEFLSIISSPLFTPKEWYKNLVGLNGIVYHPDG-F 213 (332)
Q Consensus 136 ~~~~~~l~~~~~~~~~~ndiavd~dG~lyvtd~~~~~I~~v~~~-g~~~~~~~~~~~~~p~~~~~~~~~nGi~~~~dG-~ 213 (332)
..+.++...+. ......++..++.+|+.. ..+.|+.+|+. |+........ ..+...|++ .
T Consensus 71 ~~w~~~~~~~~---~~~~sp~~~~~~~v~~g~-~dg~v~a~D~~tG~~~w~~~~~--------------~~~~~~p~~~~ 132 (369)
T 2hz6_A 71 GLTKLPFTIPE---LVQASPCRSSDGILYMGK-KQDIWYVIDLLTGEKQQTLSSA--------------FADSLSPSTSL 132 (369)
T ss_dssp CSEECSCCHHH---HHTTCSCC-----CCCCE-EEEEEEEECCC------------------------------------
T ss_pred eeeeeeccCcc---ccccCceEecCCEEEEEe-CCCEEEEEECCCCcEEEEecCC--------------CcccccccCCE
Confidence 76554431100 000111222345677643 35789999976 6643221111 012233455 8
Q ss_pred EEEEeCCCCeEEEEeCCCCC
Q 020019 214 LIVIHTFSGNLFKIDIVDGV 233 (332)
Q Consensus 214 Lyva~~~~~~i~~id~~~~~ 233 (332)
||++.. .+.|+.+|+.+++
T Consensus 133 v~~~~~-dg~v~a~d~~tG~ 151 (369)
T 2hz6_A 133 LYLGRT-EYTITMYDTKTRE 151 (369)
T ss_dssp EEEEEE-EEEEECCCSSSSS
T ss_pred EEEEec-CCEEEEEECCCCC
Confidence 888753 5679999988774
|
| >2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens} | Back alignment and structure |
|---|
Probab=94.62 E-value=0.021 Score=52.53 Aligned_cols=107 Identities=21% Similarity=0.273 Sum_probs=53.7
Q ss_pred EEEeCCCCeEEEEEeCcCCCccceEEEEECCCCcEEEEEecCCCCCCCCCccceEECCCCcEEEEeCCCCeEEEEcC-CC
Q 020019 102 LVLDHPRNRLLVVAADVFGNKYSAVAAYDLSTWNRLFLTQLSGPSDGKSCADDVTVDAEGNAYVTDVTGSKIWKVGV-KG 180 (332)
Q Consensus 102 i~vd~~~g~l~v~~~~~~~~~~~~l~~~d~~~g~~~~~~~l~~~~~~~~~~ndiavd~dG~lyvtd~~~~~I~~v~~-~g 180 (332)
.+++ ++++|++..+ +.|+.||.++|+..+.... ++. .. ..+-.+|.+|++.+..+.|+.+|. +|
T Consensus 5 P~v~--~~~v~~gs~d------g~v~a~d~~tG~~~W~~~~-~~~--~s----~p~~~~g~~~v~~s~dg~l~a~d~~tG 69 (369)
T 2hz6_A 5 VTLP--ETLLFVSTLD------GSLHAVSKRTGSIKWTLKE-DPV--LQ----VPTHVEEPAFLPDPNDGSLYTLGSKNN 69 (369)
T ss_dssp ---C--TTEEEEEETT------SEEEEEETTTCCEEEEEEC-CCS--CC----CC-----CCEEECTTTCCEEEC-----
T ss_pred Ceee--CCEEEEEcCC------CEEEEEECCCCCEEEEecC-CCc--ee----cceEcCCCEEEEeCCCCEEEEEECCCC
Confidence 3454 3899998753 5799999999999887665 221 11 122345678888888899999998 46
Q ss_pred ceEEEecCCCCCCcccccCccccCeEEEccCceEEEEeCCCCeEEEEeCCCC
Q 020019 181 EFLSIISSPLFTPKEWYKNLVGLNGIVYHPDGFLIVIHTFSGNLFKIDIVDG 232 (332)
Q Consensus 181 ~~~~~~~~~~~~~p~~~~~~~~~nGi~~~~dG~Lyva~~~~~~i~~id~~~~ 232 (332)
+....+... .+. .. ....++..++.||+.. ..++|+.+|+.+|
T Consensus 70 ~~~w~~~~~---~~~----~~-~~sp~~~~~~~v~~g~-~dg~v~a~D~~tG 112 (369)
T 2hz6_A 70 EGLTKLPFT---IPE----LV-QASPCRSSDGILYMGK-KQDIWYVIDLLTG 112 (369)
T ss_dssp CCSEECSCC---HHH----HH-TTCSCC-----CCCCE-EEEEEEEECCC--
T ss_pred ceeeeeecc---Ccc----cc-ccCceEecCCEEEEEe-CCCEEEEEECCCC
Confidence 643222111 000 00 0011122345777654 3567888888877
|
| >4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A | Back alignment and structure |
|---|
Probab=94.22 E-value=3.1 Score=37.72 Aligned_cols=155 Identities=11% Similarity=0.082 Sum_probs=83.7
Q ss_pred EEEEecCCeEEEEECCCCCCCccceeeeEEecccCcCC--CccceEEEeC--------CCCeEEEEEeCcCCCccceEEE
Q 020019 59 FIVSFLDGGIGQVAVPDDYPPGTVLEEVTLVKDLELTG--NGSLGLVLDH--------PRNRLLVVAADVFGNKYSAVAA 128 (332)
Q Consensus 59 ~~~~~~~g~I~~vd~~~~~~~~~~~~~~~~~~~~~~~~--~~~~gi~vd~--------~~g~l~v~~~~~~~~~~~~l~~ 128 (332)
+.+...+++|..++..+++. .. ..... .+.| ..++.+++.| + ++++++..+ .+.+.+
T Consensus 104 las~~~d~~v~lw~~~~~~~----~~-~~~~~--~~~gH~~~v~~v~~~p~~~~~~~~d-~~~las~s~-----D~tv~~ 170 (393)
T 4gq1_A 104 LACVCQDNTVRLIITKNETI----IT-QHVLG--GKSGHHNFVNDIDIADVYSADNRLA-EQVIASVGD-----DCTLII 170 (393)
T ss_dssp EEEEETTSCEEEEEEETTEE----EE-EEEEC--TTTSCSSCEEEEEEEEEECTTCSEE-EEEEEEEET-----TSEEEE
T ss_pred EEEEeCCCcEEEEECCCCcc----ce-eeeec--ccCCCCCceEEEEEccccccccCCC-CCEEEEEEC-----CCeEEE
Confidence 33346678888887765542 11 01111 1222 2568888875 3 676666543 456889
Q ss_pred EECCCCcEEEE-EecCCCCCCCCCccceEECCCC-cEEEEeCCCCeEEEEcCCC-ceEEEe-cCCCCC-----C----cc
Q 020019 129 YDLSTWNRLFL-TQLSGPSDGKSCADDVTVDAEG-NAYVTDVTGSKIWKVGVKG-EFLSII-SSPLFT-----P----KE 195 (332)
Q Consensus 129 ~d~~~g~~~~~-~~l~~~~~~~~~~ndiavd~dG-~lyvtd~~~~~I~~v~~~g-~~~~~~-~~~~~~-----~----p~ 195 (332)
||.+++..... ... ......+++.|++ +++++-+..+.|..+|... +..... ...... . +.
T Consensus 171 Wd~~~~~~~~~~~~~------~~~v~~v~~~p~~~~~l~~~~~d~~v~~wd~~t~~~~~~~~~~~~~~~~~~~s~~~~~~ 244 (393)
T 4gq1_A 171 WRLTDEGPILAGYPL------SSPGISVQFRPSNPNQLIVGERNGNIRIFDWTLNLSAEENSQTELVKNPWLLTLNTLPL 244 (393)
T ss_dssp EEEETTEEEEEEEEC------SSCEEEEEEETTEEEEEEEEETTSEEEEEETTCCC----------CSCCCSEEEESGGG
T ss_pred EECCCCceeeeecCC------CCCcEEEEECCCCCceEEecCCCCEEEEEECCCCcccccccccCCcccceEEecccccc
Confidence 99877654332 222 2345679999987 5777777888888888652 221110 000000 0 00
Q ss_pred -----cccCccccCeEEEc-cCceEEEEeCCCCeEEEEeCCCC
Q 020019 196 -----WYKNLVGLNGIVYH-PDGFLIVIHTFSGNLFKIDIVDG 232 (332)
Q Consensus 196 -----~~~~~~~~nGi~~~-~dG~Lyva~~~~~~i~~id~~~~ 232 (332)
..........+.+. +||...++-...+++..+++..+
T Consensus 245 ~~~~~~~~~~~~v~~v~~~~~dg~~l~s~s~d~~i~vwd~~~~ 287 (393)
T 4gq1_A 245 VNTCHSSGIASSLANVRWIGSDGSGILAMCKSGAWLRWNLFAN 287 (393)
T ss_dssp C------CCSSSCSEEEEETTTTCEEEEECTTSEEEEEEC---
T ss_pred eeeeecccccccceeeeeecCCCCEEEEEeCCCCEEEEECccC
Confidence 00112335667776 78855566677788877777644
|
| >3sbq_A Nitrous-oxide reductase; beta-propeller, cupredoxin domain, copper-contain periplasmic, oxidoreductase; 1.70A {Pseudomonas stutzeri} PDB: 3sbp_A 3sbr_A 1qni_A | Back alignment and structure |
|---|
Probab=93.34 E-value=0.12 Score=50.04 Aligned_cols=136 Identities=8% Similarity=-0.037 Sum_probs=81.8
Q ss_pred eEEEEECCC----C-cEEEEEecCCCCCCCCCccceEECCCCc-EEEEeCCCCeEEEEcCCCceEEEecCCCCCCcc---
Q 020019 125 AVAAYDLST----W-NRLFLTQLSGPSDGKSCADDVTVDAEGN-AYVTDVTGSKIWKVGVKGEFLSIISSPLFTPKE--- 195 (332)
Q Consensus 125 ~l~~~d~~~----g-~~~~~~~l~~~~~~~~~~ndiavd~dG~-lyvtd~~~~~I~~v~~~g~~~~~~~~~~~~~p~--- 195 (332)
.+.++|.+. + .....++. ...|+|+-++|||. +|++.-....+..++.+ +...++....+ .|.
T Consensus 299 gv~ViD~~~~~~~~~~~~~~iP~------pksPHGv~vsPDGkyi~v~GKLsptvtV~d~~-k~~~~~~~k~~-~~~~~~ 370 (638)
T 3sbq_A 299 KTPVLDGRKKDGKDSKFTRYVPV------PKNPHGCNTSSDGKYFIAAGKLSPTCSMIAID-KLPDLFAGKLA-DPRDVI 370 (638)
T ss_dssp CCCEEECSCBTTBCCSSEEEEEE------SSSCCCEEECTTSCEEEEECTTSSBEEEEEGG-GHHHHHTTCCS-CGGGGE
T ss_pred CeeEEccccccccCCceEEEEeC------CCCCcceeeCCCCCEEEEcCCCCCeEEEEEee-hhhhhhhcccc-Ccccce
Confidence 455667654 2 23333433 26799999999996 78888888888888755 11111111000 000
Q ss_pred --cccCccccCeEEEccCceEEEEeCCCCeEEEEeCCCC------CCccceeEEEEecCC--CCCCCCeEEEeCCCeEEE
Q 020019 196 --WYKNLVGLNGIVYHPDGFLIVIHTFSGNLFKIDIVDG------VGEGEEIKLIRVAGG--PLSFGDGLELLSPTKLVV 265 (332)
Q Consensus 196 --~~~~~~~~nGi~~~~dG~Lyva~~~~~~i~~id~~~~------~~~~~~~~~v~~~g~--~~~~pdGi~~~~dG~l~v 265 (332)
..+...+|--.+|+++|..|.+-.-..+|.+++.+.. .--...+..+.+.=+ ++..+.|=..++||+.++
T Consensus 371 ~ae~e~GlGPlHt~Fd~~G~aYTtlfidSqvvkWni~~a~~~~~g~~~~~v~~k~dv~YqpGH~~~~~get~~~dGk~lv 450 (638)
T 3sbq_A 371 VGEPELGLGPLHTTFDGRGNAYTTLFIDSQVVKWNMEEAVRAYKGEKVNYIKQKLDVHYQPGHLHASLCETNEADGKWLV 450 (638)
T ss_dssp EECCBCCSCEEEEEECSSSEEEEEETTTTEEEEEEHHHHHHHHTTCCCCCEEEEEECSSCEEEEEETTTTSTTCCSCEEE
T ss_pred EeeccCCCcccEEEECCCCceEeeeeecceEEEEeccHHHHHhcCccCCeeeeccccccCCcccccCCCccCCCCccEEE
Confidence 1123467889999999999999999999999887631 100113444543200 122334445578899888
Q ss_pred EeC
Q 020019 266 AGN 268 (332)
Q Consensus 266 a~~ 268 (332)
+-|
T Consensus 451 ~ln 453 (638)
T 3sbq_A 451 ALS 453 (638)
T ss_dssp EEE
T ss_pred Eec
Confidence 853
|
| >3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens} | Back alignment and structure |
|---|
Probab=93.16 E-value=3.9 Score=35.46 Aligned_cols=219 Identities=11% Similarity=0.007 Sum_probs=108.4
Q ss_pred CCEEEEE--ecCCeEEEEECCCCCCCccceeeeEEecccCcCCCccceEEEeCCCCeEEEEEeCcCCCccceEEEEECCC
Q 020019 56 GRRFIVS--FLDGGIGQVAVPDDYPPGTVLEEVTLVKDLELTGNGSLGLVLDHPRNRLLVVAADVFGNKYSAVAAYDLST 133 (332)
Q Consensus 56 g~~~~~~--~~~g~I~~vd~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~vd~~~g~l~v~~~~~~~~~~~~l~~~d~~~ 133 (332)
+.+|+.. .....++++|+.+.++ + .+...|. ...-..+++. +++||+..+.. ......+.+||+.+
T Consensus 12 ~~l~~~GG~~~~~~~~~~d~~~~~W-----~--~~~~~p~--~r~~~~~~~~--~~~lyv~GG~~-~~~~~~~~~~d~~~ 79 (306)
T 3ii7_A 12 DYRIALFGGSQPQSCRYFNPKDYSW-----T--DIRCPFE--KRRDAACVFW--DNVVYILGGSQ-LFPIKRMDCYNVVK 79 (306)
T ss_dssp CEEEEEECCSSTTSEEEEETTTTEE-----E--ECCCCSC--CCBSCEEEEE--TTEEEEECCBS-SSBCCEEEEEETTT
T ss_pred ceEEEEeCCCCCceEEEecCCCCCE-----e--cCCCCCc--ccceeEEEEE--CCEEEEEeCCC-CCCcceEEEEeCCC
Confidence 3455444 2246799999887654 1 1211121 1223344444 37899885432 12346789999998
Q ss_pred CcEEEEEecCCCCCCCCCccceEECCCCcEEEEeC------CCCeEEEEcCCCceEEEecCCCCCCcccccCccccCeEE
Q 020019 134 WNRLFLTQLSGPSDGKSCADDVTVDAEGNAYVTDV------TGSKIWKVGVKGEFLSIISSPLFTPKEWYKNLVGLNGIV 207 (332)
Q Consensus 134 g~~~~~~~l~~~~~~~~~~ndiavd~dG~lyvtd~------~~~~I~~v~~~g~~~~~~~~~~~~~p~~~~~~~~~nGi~ 207 (332)
++......++ . .... ..+++- ++.||+.-- ....++++|+....-..+ +.++.|. .-...+
T Consensus 80 ~~W~~~~~~p--~-~r~~-~~~~~~-~~~iyv~GG~~~~~~~~~~~~~~d~~~~~W~~~--~~~p~~r------~~~~~~ 146 (306)
T 3ii7_A 80 DSWYSKLGPP--T-PRDS-LAACAA-EGKIYTSGGSEVGNSALYLFECYDTRTESWHTK--PSMLTQR------CSHGMV 146 (306)
T ss_dssp TEEEEEECCS--S-CCBS-CEEEEE-TTEEEEECCBBTTBSCCCCEEEEETTTTEEEEE--CCCSSCC------BSCEEE
T ss_pred CeEEECCCCC--c-cccc-eeEEEE-CCEEEEECCCCCCCcEeeeEEEEeCCCCceEeC--CCCcCCc------ceeEEE
Confidence 7765544442 1 1122 223322 567998532 246799999875432222 1222111 122333
Q ss_pred EccCceEEEEeCC---------CCeEEEEeCCCCCCccceeEEEEecCCCCCC-CCeEEEeCCCeEEEEeCC-------c
Q 020019 208 YHPDGFLIVIHTF---------SGNLFKIDIVDGVGEGEEIKLIRVAGGPLSF-GDGLELLSPTKLVVAGNP-------S 270 (332)
Q Consensus 208 ~~~dG~Lyva~~~---------~~~i~~id~~~~~~~~~~~~~v~~~g~~~~~-pdGi~~~~dG~l~va~~~-------~ 270 (332)
.. ++.||+.-.. .+.++++|+.+. .-+.+... +.+. -..+++- +++||+.+.. .
T Consensus 147 ~~-~~~iyv~GG~~~~~~~~~~~~~~~~yd~~~~-----~W~~~~~~--p~~r~~~~~~~~-~~~i~v~GG~~~~~~~~~ 217 (306)
T 3ii7_A 147 EA-NGLIYVCGGSLGNNVSGRVLNSCEVYDPATE-----TWTELCPM--IEARKNHGLVFV-KDKIFAVGGQNGLGGLDN 217 (306)
T ss_dssp EE-TTEEEEECCEESCTTTCEECCCEEEEETTTT-----EEEEECCC--SSCCBSCEEEEE-TTEEEEECCEETTEEBCC
T ss_pred EE-CCEEEEECCCCCCCCcccccceEEEeCCCCC-----eEEECCCc--cchhhcceEEEE-CCEEEEEeCCCCCCCCce
Confidence 32 6688886431 466899999876 23323211 1111 2234343 6899999521 1
Q ss_pred eEEEEcCCCceEEEEEeeecCCCcccceEEEEECCeEEEEEe
Q 020019 271 ARLVESSDGWETAAVVAKFSGPVHRLATAATVKDGRVYLNHM 312 (332)
Q Consensus 271 ~~~v~~~dg~~~~~~~~~~~~~~~~~pt~va~~~g~lyv~~~ 312 (332)
........+ +....-..|..+.-.+++..+++|||...
T Consensus 218 ~~~yd~~~~----~W~~~~~~p~~r~~~~~~~~~~~i~v~GG 255 (306)
T 3ii7_A 218 VEYYDIKLN----EWKMVSPMPWKGVTVKCAAVGSIVYVLAG 255 (306)
T ss_dssp EEEEETTTT----EEEECCCCSCCBSCCEEEEETTEEEEEEC
T ss_pred EEEeeCCCC----cEEECCCCCCCccceeEEEECCEEEEEeC
Confidence 233333333 22221111222222334446899998544
|
| >3b7f_A Glycosyl hydrolase, BNR repeat; 7-bladed beta-propeller fold, structural genomics, joint CEN structural genomics, JCSG; 2.20A {Ralstonia eutropha} | Back alignment and structure |
|---|
Probab=92.81 E-value=5.5 Score=36.18 Aligned_cols=168 Identities=10% Similarity=0.041 Sum_probs=86.3
Q ss_pred ccccceEEcC--CCCEEEEEecCC----eEEEEECCCCCCCccceeeeEEecccCcC---C-------CccceEEEeCC-
Q 020019 45 FFRECAKWDD--SGRRFIVSFLDG----GIGQVAVPDDYPPGTVLEEVTLVKDLELT---G-------NGSLGLVLDHP- 107 (332)
Q Consensus 45 ~~pegia~d~--~g~~~~~~~~~g----~I~~vd~~~~~~~~~~~~~~~~~~~~~~~---~-------~~~~gi~vd~~- 107 (332)
...+.|++|+ .+++|++.. .| .|++-+..+..+ + .+...+++. + .....|++++.
T Consensus 55 ~~v~~i~~dp~~~~~l~~g~~-~g~~g~gl~~s~D~G~tW-----~--~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~ 126 (394)
T 3b7f_A 55 HTIHHIVQDPREPERMLMAAR-TGHLGPTVFRSDDGGGNW-----T--EATRPPAFNKAPEGETGRVVDHVFWLTPGHAS 126 (394)
T ss_dssp SEEEEEEECSSSTTCEEEEEE-C--CCEEEEEESSTTSCC-----E--ECSBCCCCCCCC----CCCCCEEEEEEECCTT
T ss_pred CceEEEEECCCCCCeEEEEec-CCCCCccEEEeCCCCCCc-----e--ECCccccCCCcccccccccccceeEEEeCCCC
Confidence 3567899998 677887653 24 688865433333 1 111111111 0 13456888862
Q ss_pred -CCeEEEEEeCcCCCccceEEEEECCCCcEEEEEecC-CCC------------CCCCCccceEECCC--CcEEEEeCCCC
Q 020019 108 -RNRLLVVAADVFGNKYSAVAAYDLSTWNRLFLTQLS-GPS------------DGKSCADDVTVDAE--GNAYVTDVTGS 171 (332)
Q Consensus 108 -~g~l~v~~~~~~~~~~~~l~~~d~~~g~~~~~~~l~-~~~------------~~~~~~ndiavd~d--G~lyvtd~~~~ 171 (332)
.++||++... +.|++.+-..........+. .|. ........|++|+. +++|+.... +
T Consensus 127 ~~~~l~~g~~~------ggl~~S~DgG~tW~~~~~~~~~p~~~~~~~~~~~g~~~~~~i~~i~~d~~~~~~l~vg~~~-g 199 (394)
T 3b7f_A 127 EPGTWYAGTSP------QGLFRSTDHGASWEPVAGFNDHPMRRAWTGGEQDGTPDGPKMHSILVDPRDPKHLYIGMSS-G 199 (394)
T ss_dssp STTCEEEEEET------TEEEEESSTTSBCEECHHHHTCTTHHHHHCCC----CCCCEEEEEEECTTCTTCEEEEEET-B
T ss_pred CCCEEEEEecC------CcEEEEcCCCCCeEECcCccCCccccccccccccCCCCCCceeEEEECCCCCCEEEEEECC-C
Confidence 3889998642 45776643322222211110 010 00123457999973 579987543 5
Q ss_pred eEEEEcCCCceEEEecCC---CCCCcccccC-ccccCeEEEccC--ceEEEEeCCCCeEEEEeCC
Q 020019 172 KIWKVGVKGEFLSIISSP---LFTPKEWYKN-LVGLNGIVYHPD--GFLIVIHTFSGNLFKIDIV 230 (332)
Q Consensus 172 ~I~~v~~~g~~~~~~~~~---~~~~p~~~~~-~~~~nGi~~~~d--G~Lyva~~~~~~i~~id~~ 230 (332)
.|++.+..|+.-...... .+. |..... ......|+++++ +.||++.. +.|++.+-.
T Consensus 200 gl~~s~DgG~tW~~~~~~~~~~~~-p~~~~~~g~~~~~i~~~~~~~~~l~vg~~--~gl~~s~D~ 261 (394)
T 3b7f_A 200 GVFESTDAGTDWKPLNRGCAANFL-PDPNVEFGHDPHCVVQHPAAPDILYQQNH--CGIYRMDRR 261 (394)
T ss_dssp EEEEESSTTSSCEECCTTCCCTTS-SSSSSSSCBCEEEEEECSSSTTEEEEEET--TEEEEEETT
T ss_pred CEEEECCCCCCceECCCCcccccc-CCCccccCcceeEEEECCCCCCEEEEEcC--CeEEEeCCC
Confidence 688887777642222111 000 100000 012467889887 58999763 458877533
|
| >1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A | Back alignment and structure |
|---|
Probab=92.45 E-value=5.1 Score=34.91 Aligned_cols=220 Identities=14% Similarity=0.061 Sum_probs=105.4
Q ss_pred CCCEEEEE-e---cCCeEEEEECCCCCCCccceeeeEEecccCcCCCccceEEEeCCCCeEEEEEeC----cCCCccceE
Q 020019 55 SGRRFIVS-F---LDGGIGQVAVPDDYPPGTVLEEVTLVKDLELTGNGSLGLVLDHPRNRLLVVAAD----VFGNKYSAV 126 (332)
Q Consensus 55 ~g~~~~~~-~---~~g~I~~vd~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~vd~~~g~l~v~~~~----~~~~~~~~l 126 (332)
++.+|+.. . ....++++|+.+.++ . .+...|. ...-.++++. +++||+..+. ......+.+
T Consensus 24 ~~~i~v~GG~~~~~~~~~~~~d~~~~~W-----~--~~~~~p~--~r~~~~~~~~--~~~lyv~GG~~~~~~~~~~~~~~ 92 (308)
T 1zgk_A 24 GRLIYTAGGYFRQSLSYLEAYNPSNGTW-----L--RLADLQV--PRSGLAGCVV--GGLLYAVGGRNNSPDGNTDSSAL 92 (308)
T ss_dssp CCCEEEECCBSSSBCCCEEEEETTTTEE-----E--ECCCCSS--CCBSCEEEEE--TTEEEEECCEEEETTEEEECCCE
T ss_pred CCEEEEEeCcCCCCcceEEEEcCCCCeE-----e--ECCCCCc--ccccceEEEE--CCEEEEECCCcCCCCCCeecceE
Confidence 34566544 2 124689999886654 1 1211121 1222345554 3789988432 111123468
Q ss_pred EEEECCCCcEEEEEecCCCCCCCCCccceEECCCCcEEEEeC-----CCCeEEEEcCCCceEEEecCCCCCCcccccCcc
Q 020019 127 AAYDLSTWNRLFLTQLSGPSDGKSCADDVTVDAEGNAYVTDV-----TGSKIWKVGVKGEFLSIISSPLFTPKEWYKNLV 201 (332)
Q Consensus 127 ~~~d~~~g~~~~~~~l~~~~~~~~~~ndiavd~dG~lyvtd~-----~~~~I~~v~~~g~~~~~~~~~~~~~p~~~~~~~ 201 (332)
.+||+.+++......++ . .... ..+++ -+|.||+.-- ....++++|+....-..+ +.++.+ .
T Consensus 93 ~~~d~~~~~W~~~~~~p--~-~r~~-~~~~~-~~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~--~~~p~~------r 159 (308)
T 1zgk_A 93 DCYNPMTNQWSPCAPMS--V-PRNR-IGVGV-IDGHIYAVGGSHGCIHHNSVERYEPERDEWHLV--APMLTR------R 159 (308)
T ss_dssp EEEETTTTEEEECCCCS--S-CCBT-CEEEE-ETTEEEEECCEETTEECCCEEEEETTTTEEEEC--CCCSSC------C
T ss_pred EEECCCCCeEeECCCCC--c-Cccc-cEEEE-ECCEEEEEcCCCCCcccccEEEECCCCCeEeEC--CCCCcc------c
Confidence 89999887654332231 1 1122 22333 2578998621 135788999875422211 122211 1
Q ss_pred ccCeEEEccCceEEEEeCC-----CCeEEEEeCCCCCCccceeEEEEecCCCCC-CCCeEEEeCCCeEEEEeC-------
Q 020019 202 GLNGIVYHPDGFLIVIHTF-----SGNLFKIDIVDGVGEGEEIKLIRVAGGPLS-FGDGLELLSPTKLVVAGN------- 268 (332)
Q Consensus 202 ~~nGi~~~~dG~Lyva~~~-----~~~i~~id~~~~~~~~~~~~~v~~~g~~~~-~pdGi~~~~dG~l~va~~------- 268 (332)
.-...+.. ++.||+.-.. .+.++++|+.+. .-+.+.. -+.+ .--.+++- +++||+.+.
T Consensus 160 ~~~~~~~~-~~~iyv~GG~~~~~~~~~~~~yd~~~~-----~W~~~~~--~p~~r~~~~~~~~-~~~iyv~GG~~~~~~~ 230 (308)
T 1zgk_A 160 IGVGVAVL-NRLLYAVGGFDGTNRLNSAECYYPERN-----EWRMITA--MNTIRSGAGVCVL-HNCIYAAGGYDGQDQL 230 (308)
T ss_dssp BSCEEEEE-TTEEEEECCBCSSCBCCCEEEEETTTT-----EEEECCC--CSSCCBSCEEEEE-TTEEEEECCBCSSSBC
T ss_pred cceEEEEE-CCEEEEEeCCCCCCcCceEEEEeCCCC-----eEeeCCC--CCCccccceEEEE-CCEEEEEeCCCCCCcc
Confidence 12233333 5688886321 356899998865 2222211 1111 11234443 689999962
Q ss_pred CceEEEEcCCCceEEEEEeeecCCCcccceEEEEECCeEEEEE
Q 020019 269 PSARLVESSDGWETAAVVAKFSGPVHRLATAATVKDGRVYLNH 311 (332)
Q Consensus 269 ~~~~~v~~~dg~~~~~~~~~~~~~~~~~pt~va~~~g~lyv~~ 311 (332)
........... +....-..+..+.-.+++..+++|||..
T Consensus 231 ~~v~~yd~~~~----~W~~~~~~p~~r~~~~~~~~~~~i~v~G 269 (308)
T 1zgk_A 231 NSVERYDVETE----TWTFVAPMKHRRSALGITVHQGRIYVLG 269 (308)
T ss_dssp CCEEEEETTTT----EEEECCCCSSCCBSCEEEEETTEEEEEC
T ss_pred ceEEEEeCCCC----cEEECCCCCCCccceEEEEECCEEEEEc
Confidence 12233333333 2222111121122234455789999853
|
| >2be1_A Serine/threonine-protein kinase/endoribonuclease; transcription; 2.98A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=92.39 E-value=2 Score=38.92 Aligned_cols=109 Identities=12% Similarity=0.126 Sum_probs=59.9
Q ss_pred CeEEEEEeCcCCCccceEEEEECCCCcEEEEEecC--CCCCCCCCccceEECCCCcEEEEe-CCCCeEEEEcCCCceEEE
Q 020019 109 NRLLVVAADVFGNKYSAVAAYDLSTWNRLFLTQLS--GPSDGKSCADDVTVDAEGNAYVTD-VTGSKIWKVGVKGEFLSI 185 (332)
Q Consensus 109 g~l~v~~~~~~~~~~~~l~~~d~~~g~~~~~~~l~--~~~~~~~~~ndiavd~dG~lyvtd-~~~~~I~~v~~~g~~~~~ 185 (332)
|.+||...+ +.|+.+|.++|+..+.++.. .|.-....+ +...+|.+|+.+ +..|.||.++.......+
T Consensus 11 ~~V~v~t~d------G~l~Ald~~tG~~~W~~~~~~~~p~~~~~~~---~~~~~~~~~vv~p~~dG~l~a~~~~~G~~~~ 81 (339)
T 2be1_A 11 DILIAADVE------GGLHAVDRRNGHIIWSIEPENFQPLIEIQEP---SRLETYETLIIEPFGDGNIYYFNAHQGLQKL 81 (339)
T ss_dssp EEEEEEETT------SCEEEEETTTTEEEEEECGGGSCCSEECCCS---CTTTSSEEEEECCSTTTEEEEEETTTEEEEE
T ss_pred CEEEEEeCC------CeEEEEECCCCcEEEEecCCccCCcEEecCC---ccccCCcEEEEEECCCCEEEEEECCCCcEEe
Confidence 678888764 57999999999998887663 121000001 011345688887 578999999966322222
Q ss_pred -ecCCCC--CCcccccCccccCeEEE------ccCceEEEEeCCCCeEEEEeCCCC
Q 020019 186 -ISSPLF--TPKEWYKNLVGLNGIVY------HPDGFLIVIHTFSGNLFKIDIVDG 232 (332)
Q Consensus 186 -~~~~~~--~~p~~~~~~~~~nGi~~------~~dG~Lyva~~~~~~i~~id~~~~ 232 (332)
...+.+ ..| ........+ +.+|.+|+... +++++.+++.+|
T Consensus 82 ~~~~~~lv~~SP-----~~~~~~pvv~~~~~~~~~g~Vy~Gs~-~g~l~ald~~tG 131 (339)
T 2be1_A 82 PLSIRQLVSTSP-----LHLKTNIVVNDSGKIVEDEKVYTGSM-RTIMYTINMLNG 131 (339)
T ss_dssp EEEHHHHHTTCS-----EEEECC----------CCEEEEECEE-EEEEEEEETTTC
T ss_pred eeccccceeccc-----cccCCCceeecccccccCCEEEEEec-CCEEEEEECCCC
Confidence 110000 011 000111112 24567777654 567888888877
|
| >2xe4_A Oligopeptidase B; hydrolase-inhibitor complex, hydrolase, protease inhibitor trypanosomes, CLAN SC; HET: FC0 RGL; 1.65A {Leishmania major} | Back alignment and structure |
|---|
Probab=92.24 E-value=4.4 Score=40.58 Aligned_cols=117 Identities=10% Similarity=0.023 Sum_probs=67.2
Q ss_pred ccceEEc-CCCCEEE-EEecCC----eEEEEECCCC-CCCccceeeeEEecccCcCCCccceEEEeCCCCeEEEEEeCcC
Q 020019 47 RECAKWD-DSGRRFI-VSFLDG----GIGQVAVPDD-YPPGTVLEEVTLVKDLELTGNGSLGLVLDHPRNRLLVVAADVF 119 (332)
Q Consensus 47 pegia~d-~~g~~~~-~~~~~g----~I~~vd~~~~-~~~~~~~~~~~~~~~~~~~~~~~~gi~vd~~~g~l~v~~~~~~ 119 (332)
..++.++ |||+.+. +....| +|+.++..++ +. +.+ .+. . ...+++..++...|+++..+..
T Consensus 176 ~~~~~~S~PDG~~lAy~~~~~G~~~~~l~v~dl~~g~~~---l~~--~~~---~----~~~~~~WspDg~~l~y~~~d~~ 243 (751)
T 2xe4_A 176 VMEVKPAPPEHDLVAFSVDMSGNEVYTIEFKRISDPSQT---IAD--KVS---G----TNGEIVWGPDHTSLFYVTKDET 243 (751)
T ss_dssp EEEEEECTTTTCEEEEEEESSSSSCEEEEEEETTCTTCC---CCC--CEE---E----ECSCCEECSSTTEEEEEEECTT
T ss_pred EeeeEecCCCCCEEEEEEeCCCCceEEEEEEECCCCCEe---CCc--ccc---C----ceeeEEEecCCCEEEEEEECCC
Confidence 3457899 9998554 433233 4999999877 52 111 111 0 1246778887446666654321
Q ss_pred CCccceEEEEECCCCcE--EEEEecCCCCCCCCCccceEECCCCc-EEEEeC--CCCeEEEEcCCC
Q 020019 120 GNKYSAVAAYDLSTWNR--LFLTQLSGPSDGKSCADDVTVDAEGN-AYVTDV--TGSKIWKVGVKG 180 (332)
Q Consensus 120 ~~~~~~l~~~d~~~g~~--~~~~~l~~~~~~~~~~ndiavd~dG~-lyvtd~--~~~~I~~v~~~g 180 (332)
.....|+.+++.+++. ...+.-. . ..+..++.+.+||+ |+++.. ....||.++.++
T Consensus 244 -~~~~~v~~~~lgt~~~~~~lv~~~~--~--~~~~~~~~~SpDg~~l~~~~~~~~~~~l~~~d~~~ 304 (751)
T 2xe4_A 244 -LRENKVWRHVMGKLQSEDVCLYEEH--N--PLFSAFMYKAADTNTLCIGSQSPETAEVHLLDLRK 304 (751)
T ss_dssp -CCEEEEEEEETTSCGGGCEEEEECC--C--TTCEEEEEECTTSSEEEEEEECSSCEEEEEEESSS
T ss_pred -CCCCEEEEEECCCCchhcEEEEecC--C--CceEEEEEECCCCCEEEEEecCCCCceEEEEECCC
Confidence 1224788899877642 2222221 1 23445788999996 555432 345788888764
|
| >2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens} | Back alignment and structure |
|---|
Probab=90.49 E-value=7.9 Score=33.33 Aligned_cols=169 Identities=14% Similarity=0.093 Sum_probs=85.8
Q ss_pred CeEEEEECCCCCCCccceeeeEEecccCcCCCccceEEEeCCCCeEEEEEeCcCCCccceEEEEECCCCc---EEEEEec
Q 020019 66 GGIGQVAVPDDYPPGTVLEEVTLVKDLELTGNGSLGLVLDHPRNRLLVVAADVFGNKYSAVAAYDLSTWN---RLFLTQL 142 (332)
Q Consensus 66 g~I~~vd~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~vd~~~g~l~v~~~~~~~~~~~~l~~~d~~~g~---~~~~~~l 142 (332)
..++++|+.+.++ + .+...|. ...-.++++.. ++||+..+.........+++||+.+++ ......+
T Consensus 31 ~~~~~~d~~~~~W-----~--~~~~~p~--~r~~~~~~~~~--~~l~v~GG~~~~~~~~~~~~~d~~~~~~~~W~~~~~~ 99 (301)
T 2vpj_A 31 DVVEKYDPKTQEW-----S--FLPSITR--KRRYVASVSLH--DRIYVIGGYDGRSRLSSVECLDYTADEDGVWYSVAPM 99 (301)
T ss_dssp CCEEEEETTTTEE-----E--ECCCCSS--CCBSCEEEEET--TEEEEECCBCSSCBCCCEEEEETTCCTTCCCEEECCC
T ss_pred eEEEEEcCCCCeE-----E--eCCCCCh--hhccccEEEEC--CEEEEEcCCCCCccCceEEEEECCCCCCCeeEECCCC
Confidence 4689999876653 1 1211121 12223444442 788987542211234568999998877 5443333
Q ss_pred CCCCCCCCCccceEECCCCcEEEEeC-----CCCeEEEEcCCCceEEEecCCCCCCcccccCccccCeEEEccCceEEEE
Q 020019 143 SGPSDGKSCADDVTVDAEGNAYVTDV-----TGSKIWKVGVKGEFLSIISSPLFTPKEWYKNLVGLNGIVYHPDGFLIVI 217 (332)
Q Consensus 143 ~~~~~~~~~~ndiavd~dG~lyvtd~-----~~~~I~~v~~~g~~~~~~~~~~~~~p~~~~~~~~~nGi~~~~dG~Lyva 217 (332)
+ . .... ..+++. ++.+|+.-- ....++++|+....-..+. .++.+ ......+.. ++.||+.
T Consensus 100 p--~-~r~~-~~~~~~-~~~lyv~GG~~~~~~~~~~~~~d~~~~~W~~~~--~~p~~------r~~~~~~~~-~~~iyv~ 165 (301)
T 2vpj_A 100 N--V-RRGL-AGATTL-GDMIYVSGGFDGSRRHTSMERYDPNIDQWSMLG--DMQTA------REGAGLVVA-SGVIYCL 165 (301)
T ss_dssp S--S-CCBS-CEEEEE-TTEEEEECCBCSSCBCCEEEEEETTTTEEEEEE--ECSSC------CBSCEEEEE-TTEEEEE
T ss_pred C--C-Cccc-eeEEEE-CCEEEEEcccCCCcccceEEEEcCCCCeEEECC--CCCCC------cccceEEEE-CCEEEEE
Confidence 2 1 1122 223332 578998632 1357999998754222111 11111 112233333 6788886
Q ss_pred eC-----CCCeEEEEeCCCCCCccceeEEEEecCCCCCC-CCeEEEeCCCeEEEEe
Q 020019 218 HT-----FSGNLFKIDIVDGVGEGEEIKLIRVAGGPLSF-GDGLELLSPTKLVVAG 267 (332)
Q Consensus 218 ~~-----~~~~i~~id~~~~~~~~~~~~~v~~~g~~~~~-pdGi~~~~dG~l~va~ 267 (332)
-. ..+.++++|+.+. .-+.+.. -+.+. -..+++ -+++||+.+
T Consensus 166 GG~~~~~~~~~~~~~d~~~~-----~W~~~~~--~p~~r~~~~~~~-~~~~i~v~G 213 (301)
T 2vpj_A 166 GGYDGLNILNSVEKYDPHTG-----HWTNVTP--MATKRSGAGVAL-LNDHIYVVG 213 (301)
T ss_dssp CCBCSSCBCCCEEEEETTTT-----EEEEECC--CSSCCBSCEEEE-ETTEEEEEC
T ss_pred CCCCCCcccceEEEEeCCCC-----cEEeCCC--CCcccccceEEE-ECCEEEEEe
Confidence 32 2456899999876 2333321 11111 123333 368999996
|
| >3b7f_A Glycosyl hydrolase, BNR repeat; 7-bladed beta-propeller fold, structural genomics, joint CEN structural genomics, JCSG; 2.20A {Ralstonia eutropha} | Back alignment and structure |
|---|
Probab=89.35 E-value=12 Score=33.81 Aligned_cols=110 Identities=12% Similarity=0.059 Sum_probs=59.3
Q ss_pred EeCCCCeEEEEEeCcCCCccceEEEEECCC-C-cEEEEE-ecCCCCCCCCCccceEECC--CCcEEEEeCCC---CeEEE
Q 020019 104 LDHPRNRLLVVAADVFGNKYSAVAAYDLST-W-NRLFLT-QLSGPSDGKSCADDVTVDA--EGNAYVTDVTG---SKIWK 175 (332)
Q Consensus 104 vd~~~g~l~v~~~~~~~~~~~~l~~~d~~~-g-~~~~~~-~l~~~~~~~~~~ndiavd~--dG~lyvtd~~~---~~I~~ 175 (332)
.|.+ ++||+... ..+++++... + +..... .+ .......|++|| ++++|+.-... ..|++
T Consensus 19 ~d~~-g~l~vgt~-------~Gl~~~~~~~~g~~W~~~~~~~-----~~~~v~~i~~dp~~~~~l~~g~~~g~~g~gl~~ 85 (394)
T 3b7f_A 19 ESGP-VMLLVATI-------KGAWFLASDPARRTWELRGPVF-----LGHTIHHIVQDPREPERMLMAARTGHLGPTVFR 85 (394)
T ss_dssp CCSC-CEEEEEET-------TEEEEEEECTTSCSEEEEEEES-----TTSEEEEEEECSSSTTCEEEEEEC--CCEEEEE
T ss_pred CCCC-CEEEEEec-------CceEEEECCCCCCCceECCccC-----CCCceEEEEECCCCCCeEEEEecCCCCCccEEE
Confidence 3554 89999874 2366666543 2 232211 12 124577899999 67899875432 17888
Q ss_pred EcCCCceEEEecCC-CCCCccccc----CccccCeEEEcc---CceEEEEeCCCCeEEEEe
Q 020019 176 VGVKGEFLSIISSP-LFTPKEWYK----NLVGLNGIVYHP---DGFLIVIHTFSGNLFKID 228 (332)
Q Consensus 176 v~~~g~~~~~~~~~-~~~~p~~~~----~~~~~nGi~~~~---dG~Lyva~~~~~~i~~id 228 (332)
.+..|+.-..+..+ .+.... .. .......|++++ .+.||+... .+.|+|-+
T Consensus 86 s~D~G~tW~~~~~~~~~~~~~-~~~~~~~~~~i~~l~~~~~~~~~~l~~g~~-~ggl~~S~ 144 (394)
T 3b7f_A 86 SDDGGGNWTEATRPPAFNKAP-EGETGRVVDHVFWLTPGHASEPGTWYAGTS-PQGLFRST 144 (394)
T ss_dssp ESSTTSCCEECSBCCCCCCCC-----CCCCCEEEEEEECCTTSTTCEEEEEE-TTEEEEES
T ss_pred eCCCCCCceECCccccCCCcc-cccccccccceeEEEeCCCCCCCEEEEEec-CCcEEEEc
Confidence 87667632222211 111000 00 001234678885 458998754 45688764
|
| >4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens} | Back alignment and structure |
|---|
Probab=88.40 E-value=12 Score=32.52 Aligned_cols=170 Identities=12% Similarity=-0.035 Sum_probs=84.8
Q ss_pred CeEEEEECCCCCCCccceeeeEEecccCcCCCccceEEEeCCCCeEEEEEeC-----cCC-CccceEEEEECCCCcEEEE
Q 020019 66 GGIGQVAVPDDYPPGTVLEEVTLVKDLELTGNGSLGLVLDHPRNRLLVVAAD-----VFG-NKYSAVAAYDLSTWNRLFL 139 (332)
Q Consensus 66 g~I~~vd~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~vd~~~g~l~v~~~~-----~~~-~~~~~l~~~d~~~g~~~~~ 139 (332)
..++.+|+.++++ .....|......-.++++. +++||+..+. ... .....+.+||+.+++....
T Consensus 13 ~~~~~yd~~~~~W--------~~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~~~~~~~d~~~~~W~~~ 82 (315)
T 4asc_A 13 EGAVAYDPAANEC--------YCASLSSQVPKNHVSLVTK--ENQVFVAGGLFYNEDNKEDPMSAYFLQFDHLDSEWLGM 82 (315)
T ss_dssp TEEEEEETTTTEE--------EEEECCCCSCSSEEEEECT--TCCEEEEEEEEECSSCSSSCEEEEEEEEETTTTEEEEC
T ss_pred CceEEECCCCCeE--------ecCCCCCCCCccceEEEEE--CCEEEEEcCcccCCCCCccccccceEEecCCCCeEEEC
Confidence 6799999987654 1121121111222344443 3789988652 111 1123488999998765433
Q ss_pred EecCCCCCCCCCccceEECCCCcEEEEeC--------CCCeEEEEcCCCceEEEecCCCCCCcccccCccccCeEEEccC
Q 020019 140 TQLSGPSDGKSCADDVTVDAEGNAYVTDV--------TGSKIWKVGVKGEFLSIISSPLFTPKEWYKNLVGLNGIVYHPD 211 (332)
Q Consensus 140 ~~l~~~~~~~~~~ndiavd~dG~lyvtd~--------~~~~I~~v~~~g~~~~~~~~~~~~~p~~~~~~~~~nGi~~~~d 211 (332)
..++ . ......+++. ++.||+.-- ....++++|+....=... +.++.| ..-...+. -+
T Consensus 83 ~~~p--~--~r~~~~~~~~-~~~lyv~GG~~~~~~~~~~~~~~~~d~~~~~W~~~--~~~p~~------r~~~~~~~-~~ 148 (315)
T 4asc_A 83 PPLP--S--PRCLFGLGEA-LNSIYVVGGREIKDGERCLDSVMCYDRLSFKWGES--DPLPYV------VYGHTVLS-HM 148 (315)
T ss_dssp CCBS--S--CEESCEEEEE-TTEEEEECCEESSTTCCBCCCEEEEETTTTEEEEC--CCCSSC------CBSCEEEE-ET
T ss_pred CCCC--c--chhceeEEEE-CCEEEEEeCCcCCCCCcccceEEEECCCCCcEeEC--CCCCCc------ccceeEEE-EC
Confidence 2231 1 1112233333 567888522 235689999875421111 222211 11223333 35
Q ss_pred ceEEEEeCC------CCeEEEEeCCCCCCccceeEEEEecCCCCCC-CCeEEEeCCCeEEEEe
Q 020019 212 GFLIVIHTF------SGNLFKIDIVDGVGEGEEIKLIRVAGGPLSF-GDGLELLSPTKLVVAG 267 (332)
Q Consensus 212 G~Lyva~~~------~~~i~~id~~~~~~~~~~~~~v~~~g~~~~~-pdGi~~~~dG~l~va~ 267 (332)
+.||+.-.. .+.++++|+.+. .=+.+.. -+.+. -..+++ -+++||+.+
T Consensus 149 ~~iyv~GG~~~~~~~~~~~~~yd~~~~-----~W~~~~~--~p~~r~~~~~~~-~~~~iyv~G 203 (315)
T 4asc_A 149 DLVYVIGGKGSDRKCLNKMCVYDPKKF-----EWKELAP--MQTARSLFGATV-HDGRIIVAA 203 (315)
T ss_dssp TEEEEECCBCTTSCBCCCEEEEETTTT-----EEEECCC--CSSCCBSCEEEE-ETTEEEEEE
T ss_pred CEEEEEeCCCCCCcccceEEEEeCCCC-----eEEECCC--CCCchhceEEEE-ECCEEEEEe
Confidence 678886432 356899998865 2222211 11111 123333 368999995
|
| >2uvk_A YJHT; unknown function, hypothetical protein, sialic acid metabolism, kelch repeat, beta-propeller; HET: MSE; 1.50A {Escherichia coli} | Back alignment and structure |
|---|
Probab=87.88 E-value=14 Score=32.68 Aligned_cols=99 Identities=14% Similarity=0.073 Sum_probs=52.0
Q ss_pred CCCEEEEE-ecCCeEEEEECCCCCCCccceeeeEEecccCcC--CCccceEEEeCCCCeEEEEEeC-c--C--CCccceE
Q 020019 55 SGRRFIVS-FLDGGIGQVAVPDDYPPGTVLEEVTLVKDLELT--GNGSLGLVLDHPRNRLLVVAAD-V--F--GNKYSAV 126 (332)
Q Consensus 55 ~g~~~~~~-~~~g~I~~vd~~~~~~~~~~~~~~~~~~~~~~~--~~~~~gi~vd~~~g~l~v~~~~-~--~--~~~~~~l 126 (332)
++.+|+.. .....++++|+...+. +|..-+.++ ...-.++++-. ++|||..+. . . ....+.+
T Consensus 19 ~~~iyv~GG~~~~~~~~~d~~~~~~--------~W~~~~~~p~~~R~~~~~~~~~--~~lyv~GG~~~~~~~~~~~~~~v 88 (357)
T 2uvk_A 19 NDTVYIGLGSAGTAWYKLDTQAKDK--------KWTALAAFPGGPRDQATSAFID--GNLYVFGGIGKNSEGLTQVFNDV 88 (357)
T ss_dssp TTEEEEECGGGTTCEEEEETTSSSC--------CEEECCCCTTCCCBSCEEEEET--TEEEEECCEEECTTSCEEECCCE
T ss_pred CCEEEEEeCcCCCeEEEEccccCCC--------CeeECCCCCCCcCccceEEEEC--CEEEEEcCCCCCCCccceeeccE
Confidence 56777766 5566899999874211 233222222 12334455543 789997532 1 0 0123568
Q ss_pred EEEECCCCcEEEEEecCCCCCCCCCccceEECCCCcEEEEe
Q 020019 127 AAYDLSTWNRLFLTQLSGPSDGKSCADDVTVDAEGNAYVTD 167 (332)
Q Consensus 127 ~~~d~~~g~~~~~~~l~~~~~~~~~~ndiavd~dG~lyvtd 167 (332)
.+||+++.+......+. |. ......+++ -++.||+.-
T Consensus 89 ~~yd~~~~~W~~~~~~~-p~--~r~~~~~~~-~~~~iyv~G 125 (357)
T 2uvk_A 89 HKYNPKTNSWVKLMSHA-PM--GMAGHVTFV-HNGKAYVTG 125 (357)
T ss_dssp EEEETTTTEEEECSCCC-SS--CCSSEEEEE-ETTEEEEEE
T ss_pred EEEeCCCCcEEECCCCC-Cc--ccccceEEE-ECCEEEEEe
Confidence 99999887654332221 11 112223344 567899854
|
| >2xe4_A Oligopeptidase B; hydrolase-inhibitor complex, hydrolase, protease inhibitor trypanosomes, CLAN SC; HET: FC0 RGL; 1.65A {Leishmania major} | Back alignment and structure |
|---|
Probab=85.82 E-value=30 Score=34.46 Aligned_cols=117 Identities=8% Similarity=0.048 Sum_probs=66.7
Q ss_pred ccceEEEe-CCCCe-EEEEEeCcCCCccceEEEEECCCC-cEEEEEecCCCCCCCCCccceEECCCCc-EEEEeCC-C--
Q 020019 98 GSLGLVLD-HPRNR-LLVVAADVFGNKYSAVAAYDLSTW-NRLFLTQLSGPSDGKSCADDVTVDAEGN-AYVTDVT-G-- 170 (332)
Q Consensus 98 ~~~gi~vd-~~~g~-l~v~~~~~~~~~~~~l~~~d~~~g-~~~~~~~l~~~~~~~~~~ndiavd~dG~-lyvtd~~-~-- 170 (332)
...+..+. |+ |+ |.++....+ .....|+++|+++| +... ..+. ....++++.|||+ ||++... .
T Consensus 175 ~~~~~~~S~PD-G~~lAy~~~~~G-~~~~~l~v~dl~~g~~~l~-~~~~------~~~~~~~WspDg~~l~y~~~d~~~~ 245 (751)
T 2xe4_A 175 DVMEVKPAPPE-HDLVAFSVDMSG-NEVYTIEFKRISDPSQTIA-DKVS------GTNGEIVWGPDHTSLFYVTKDETLR 245 (751)
T ss_dssp EEEEEEECTTT-TCEEEEEEESSS-SSCEEEEEEETTCTTCCCC-CCEE------EECSCCEECSSTTEEEEEEECTTCC
T ss_pred EEeeeEecCCC-CCEEEEEEeCCC-CceEEEEEEECCCCCEeCC-cccc------CceeeEEEecCCCEEEEEEECCCCC
Confidence 34568899 87 65 333332111 12346999999988 6311 0110 1134689999984 6665432 1
Q ss_pred -CeEEEEcCCCce---EEEecCCCCCCcccccCccccCeEEEccCc-eEEEEeC--CCCeEEEEeCCCC
Q 020019 171 -SKIWKVGVKGEF---LSIISSPLFTPKEWYKNLVGLNGIVYHPDG-FLIVIHT--FSGNLFKIDIVDG 232 (332)
Q Consensus 171 -~~I~~v~~~g~~---~~~~~~~~~~~p~~~~~~~~~nGi~~~~dG-~Lyva~~--~~~~i~~id~~~~ 232 (332)
..||+++.++.. ..++..+. .....++.+++|| +|++... .+..||.++++++
T Consensus 246 ~~~v~~~~lgt~~~~~~lv~~~~~---------~~~~~~~~~SpDg~~l~~~~~~~~~~~l~~~d~~~~ 305 (751)
T 2xe4_A 246 ENKVWRHVMGKLQSEDVCLYEEHN---------PLFSAFMYKAADTNTLCIGSQSPETAEVHLLDLRKG 305 (751)
T ss_dssp EEEEEEEETTSCGGGCEEEEECCC---------TTCEEEEEECTTSSEEEEEEECSSCEEEEEEESSSC
T ss_pred CCEEEEEECCCCchhcEEEEecCC---------CceEEEEEECCCCCEEEEEecCCCCceEEEEECCCC
Confidence 378888876431 22222110 0112478899999 7776653 3457899999865
|
| >2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens} | Back alignment and structure |
|---|
Probab=85.40 E-value=17 Score=31.21 Aligned_cols=208 Identities=13% Similarity=0.131 Sum_probs=100.7
Q ss_pred CeEEEEECCCCCCCccceeeeEEecccCcCCCccceEEEeCCCCeEEEEEeCcCCCccceEEEEECCCCcEEEEEecCCC
Q 020019 66 GGIGQVAVPDDYPPGTVLEEVTLVKDLELTGNGSLGLVLDHPRNRLLVVAADVFGNKYSAVAAYDLSTWNRLFLTQLSGP 145 (332)
Q Consensus 66 g~I~~vd~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~vd~~~g~l~v~~~~~~~~~~~~l~~~d~~~g~~~~~~~l~~~ 145 (332)
..++.+|+.+.++ + .+...|. ...-.++++. +++||+..+.........+.+||+.+++......++
T Consensus 30 ~~~~~~d~~~~~W-----~--~~~~~p~--~r~~~~~~~~--~~~lyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p-- 96 (302)
T 2xn4_A 30 RSVECYDFKEERW-----H--QVAELPS--RRCRAGMVYM--AGLVFAVGGFNGSLRVRTVDSYDPVKDQWTSVANMR-- 96 (302)
T ss_dssp CCEEEEETTTTEE-----E--EECCCSS--CCBSCEEEEE--TTEEEEESCBCSSSBCCCEEEEETTTTEEEEECCCS--
T ss_pred CcEEEEcCcCCcE-----e--EcccCCc--ccccceEEEE--CCEEEEEeCcCCCccccceEEECCCCCceeeCCCCC--
Confidence 4688888876553 1 2211121 1222345544 378998854222123456899999987755433332
Q ss_pred CCCCCCccceEECCCCcEEEEeCC-----CCeEEEEcCCCceEEEecCCCCCCcccccCccccCeEEEccCceEEEEeCC
Q 020019 146 SDGKSCADDVTVDAEGNAYVTDVT-----GSKIWKVGVKGEFLSIISSPLFTPKEWYKNLVGLNGIVYHPDGFLIVIHTF 220 (332)
Q Consensus 146 ~~~~~~~ndiavd~dG~lyvtd~~-----~~~I~~v~~~g~~~~~~~~~~~~~p~~~~~~~~~nGi~~~~dG~Lyva~~~ 220 (332)
. ......+++ -++.+|+.--. ...++++|+....-..+ +.++.| ......+.. ++.||+.-..
T Consensus 97 ~--~r~~~~~~~-~~~~iyv~GG~~~~~~~~~~~~~d~~~~~W~~~--~~~p~~------r~~~~~~~~-~~~iyv~GG~ 164 (302)
T 2xn4_A 97 D--RRSTLGAAV-LNGLLYAVGGFDGSTGLSSVEAYNIKSNEWFHV--APMNTR------RSSVGVGVV-GGLLYAVGGY 164 (302)
T ss_dssp S--CCBSCEEEE-ETTEEEEEEEECSSCEEEEEEEEETTTTEEEEE--CCCSSC------CBSCEEEEE-TTEEEEECCE
T ss_pred c--cccceEEEE-ECCEEEEEcCCCCCccCceEEEEeCCCCeEeec--CCCCCc------ccCceEEEE-CCEEEEEeCC
Confidence 1 112223333 25678885321 24688898875422222 122211 112233333 5688886321
Q ss_pred -------CCeEEEEeCCCCCCccceeEEEE-ecCCCCCCCCeEEEeCCCeEEEEeCC-------ceEEEEcCCC-ceEEE
Q 020019 221 -------SGNLFKIDIVDGVGEGEEIKLIR-VAGGPLSFGDGLELLSPTKLVVAGNP-------SARLVESSDG-WETAA 284 (332)
Q Consensus 221 -------~~~i~~id~~~~~~~~~~~~~v~-~~g~~~~~pdGi~~~~dG~l~va~~~-------~~~~v~~~dg-~~~~~ 284 (332)
.+.++++|+.+. .-+.+. .+ .+... ..+++ -+++||+.+.. .........+ |..
T Consensus 165 ~~~~~~~~~~~~~yd~~~~-----~W~~~~~~p-~~r~~-~~~~~-~~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~-- 234 (302)
T 2xn4_A 165 DVASRQCLSTVECYNATTN-----EWTYIAEMS-TRRSG-AGVGV-LNNLLYAVGGHDGPLVRKSVEVYDPTTNAWRQ-- 234 (302)
T ss_dssp ETTTTEECCCEEEEETTTT-----EEEEECCCS-SCCBS-CEEEE-ETTEEEEECCBSSSSBCCCEEEEETTTTEEEE--
T ss_pred CCCCCccccEEEEEeCCCC-----cEEECCCCc-ccccc-ccEEE-ECCEEEEECCCCCCcccceEEEEeCCCCCEee--
Confidence 356899999876 223232 11 11111 23433 36899999621 2233333333 321
Q ss_pred EEeeecCCCcccceEEEEECCeEEEEE
Q 020019 285 VVAKFSGPVHRLATAATVKDGRVYLNH 311 (332)
Q Consensus 285 ~~~~~~~~~~~~pt~va~~~g~lyv~~ 311 (332)
...+ +..+.-.+++..+++|||..
T Consensus 235 -~~~~--~~~r~~~~~~~~~~~i~v~G 258 (302)
T 2xn4_A 235 -VADM--NMCRRNAGVCAVNGLLYVVG 258 (302)
T ss_dssp -ECCC--SSCCBSCEEEEETTEEEEEC
T ss_pred -CCCC--CCccccCeEEEECCEEEEEC
Confidence 2222 21122234455789999843
|
| >2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens} | Back alignment and structure |
|---|
Probab=83.75 E-value=20 Score=30.67 Aligned_cols=180 Identities=12% Similarity=0.096 Sum_probs=94.4
Q ss_pred CCCEEEEE-ec----CCeEEEEECCCCC---CCccceeeeEEecccCcCCCccceEEEeCCCCeEEEEEeCcCCCccceE
Q 020019 55 SGRRFIVS-FL----DGGIGQVAVPDDY---PPGTVLEEVTLVKDLELTGNGSLGLVLDHPRNRLLVVAADVFGNKYSAV 126 (332)
Q Consensus 55 ~g~~~~~~-~~----~g~I~~vd~~~~~---~~~~~~~~~~~~~~~~~~~~~~~gi~vd~~~g~l~v~~~~~~~~~~~~l 126 (332)
++.+|+.. .. ...++++|+.+.+ + + .+...|. ...-.++++. +++||+..+.........+
T Consensus 62 ~~~l~v~GG~~~~~~~~~~~~~d~~~~~~~~W-----~--~~~~~p~--~r~~~~~~~~--~~~lyv~GG~~~~~~~~~~ 130 (301)
T 2vpj_A 62 HDRIYVIGGYDGRSRLSSVECLDYTADEDGVW-----Y--SVAPMNV--RRGLAGATTL--GDMIYVSGGFDGSRRHTSM 130 (301)
T ss_dssp TTEEEEECCBCSSCBCCCEEEEETTCCTTCCC-----E--EECCCSS--CCBSCEEEEE--TTEEEEECCBCSSCBCCEE
T ss_pred CCEEEEEcCCCCCccCceEEEEECCCCCCCee-----E--ECCCCCC--CccceeEEEE--CCEEEEEcccCCCcccceE
Confidence 45677654 22 2469999988776 5 1 2221121 1223344444 2889998543222224578
Q ss_pred EEEECCCCcEEEEEecCCCCCCCCCccceEECCCCcEEEEeC-----CCCeEEEEcCCCceEEEecCCCCCCcccccCcc
Q 020019 127 AAYDLSTWNRLFLTQLSGPSDGKSCADDVTVDAEGNAYVTDV-----TGSKIWKVGVKGEFLSIISSPLFTPKEWYKNLV 201 (332)
Q Consensus 127 ~~~d~~~g~~~~~~~l~~~~~~~~~~ndiavd~dG~lyvtd~-----~~~~I~~v~~~g~~~~~~~~~~~~~p~~~~~~~ 201 (332)
.+||+++++......++.+ ... ..+++. ++.||+.-- ....++++|+....-..+ +.++.+ ..
T Consensus 131 ~~~d~~~~~W~~~~~~p~~---r~~-~~~~~~-~~~iyv~GG~~~~~~~~~~~~~d~~~~~W~~~--~~~p~~-----r~ 198 (301)
T 2vpj_A 131 ERYDPNIDQWSMLGDMQTA---REG-AGLVVA-SGVIYCLGGYDGLNILNSVEKYDPHTGHWTNV--TPMATK-----RS 198 (301)
T ss_dssp EEEETTTTEEEEEEECSSC---CBS-CEEEEE-TTEEEEECCBCSSCBCCCEEEEETTTTEEEEE--CCCSSC-----CB
T ss_pred EEEcCCCCeEEECCCCCCC---ccc-ceEEEE-CCEEEEECCCCCCcccceEEEEeCCCCcEEeC--CCCCcc-----cc
Confidence 9999998776655444211 122 223332 578998632 246789999875422222 122211 11
Q ss_pred ccCeEEEccCceEEEEeCC-----CCeEEEEeCCCCCCccceeEEEEecCCCCC-CCCeEEEeCCCeEEEEe
Q 020019 202 GLNGIVYHPDGFLIVIHTF-----SGNLFKIDIVDGVGEGEEIKLIRVAGGPLS-FGDGLELLSPTKLVVAG 267 (332)
Q Consensus 202 ~~nGi~~~~dG~Lyva~~~-----~~~i~~id~~~~~~~~~~~~~v~~~g~~~~-~pdGi~~~~dG~l~va~ 267 (332)
. ..++.. ++.||+.-.. .+.++++|+.+. .-+.+.. -+.+ .-.++++- +++||+.+
T Consensus 199 ~-~~~~~~-~~~i~v~GG~~~~~~~~~v~~yd~~~~-----~W~~~~~--~p~~r~~~~~~~~-~~~i~v~G 260 (301)
T 2vpj_A 199 G-AGVALL-NDHIYVVGGFDGTAHLSSVEAYNIRTD-----SWTTVTS--MTTPRCYVGATVL-RGRLYAIA 260 (301)
T ss_dssp S-CEEEEE-TTEEEEECCBCSSSBCCCEEEEETTTT-----EEEEECC--CSSCCBSCEEEEE-TTEEEEEC
T ss_pred c-ceEEEE-CCEEEEEeCCCCCcccceEEEEeCCCC-----cEEECCC--CCCcccceeEEEE-CCEEEEEc
Confidence 1 233332 5688886432 357899999876 2332321 1111 11234333 68899996
|
| >2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding, invasion and metastasis, UBL conjugation pathway, UBL protein folding; 2.00A {Rattus norvegicus} | Back alignment and structure |
|---|
Probab=83.63 E-value=21 Score=30.91 Aligned_cols=155 Identities=15% Similarity=0.146 Sum_probs=81.2
Q ss_pred EcCCCCEEEEE-ec---CC-------eEEEEECCCCCCCccceeeeEEecccCcC-CCccceEEEeCCCCeEEEEEeCc-
Q 020019 52 WDDSGRRFIVS-FL---DG-------GIGQVAVPDDYPPGTVLEEVTLVKDLELT-GNGSLGLVLDHPRNRLLVVAADV- 118 (332)
Q Consensus 52 ~d~~g~~~~~~-~~---~g-------~I~~vd~~~~~~~~~~~~~~~~~~~~~~~-~~~~~gi~vd~~~g~l~v~~~~~- 118 (332)
+..++.+|+.. .. .+ .++++|+.+.++ ..-+.++ ...-.++++. +++||+..+..
T Consensus 53 ~~~~~~lyv~GG~~~~~~~~~~~~~~~~~~~d~~~~~W----------~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~ 120 (318)
T 2woz_A 53 VTQQNQVYVVGGLYVDEENKDQPLQSYFFQLDNVSSEW----------VGLPPLPSARCLFGLGEV--DDKIYVVAGKDL 120 (318)
T ss_dssp ECSSSCEEEEESSCC-------CCCBEEEEEETTTTEE----------EECSCBSSCBCSCEEEEE--TTEEEEEEEEBT
T ss_pred EEECCEEEEECCcccCccccCCCccccEEEEeCCCCcE----------EECCCCCccccccceEEE--CCEEEEEcCccC
Confidence 34556777765 21 11 288999876653 2212222 1233455554 37999986532
Q ss_pred -CCCccceEEEEECCCCcEEEEEecCCCCCCCCCccceEECCCCcEEEEeC------CCCeEEEEcCCCceEEEecCCCC
Q 020019 119 -FGNKYSAVAAYDLSTWNRLFLTQLSGPSDGKSCADDVTVDAEGNAYVTDV------TGSKIWKVGVKGEFLSIISSPLF 191 (332)
Q Consensus 119 -~~~~~~~l~~~d~~~g~~~~~~~l~~~~~~~~~~ndiavd~dG~lyvtd~------~~~~I~~v~~~g~~~~~~~~~~~ 191 (332)
.......+.+||+++.+......++ . ......+++ -+|.||+.-- ....++++|+....=..+ +.+
T Consensus 121 ~~~~~~~~~~~yd~~~~~W~~~~~~p--~--~r~~~~~~~-~~~~iyv~GG~~~~~~~~~~~~~yd~~~~~W~~~--~~~ 193 (318)
T 2woz_A 121 QTEASLDSVLCYDPVAAKWSEVKNLP--I--KVYGHNVIS-HNGMIYCLGGKTDDKKCTNRVFIYNPKKGDWKDL--APM 193 (318)
T ss_dssp TTCCEEEEEEEEETTTTEEEEECCCS--S--CEESCEEEE-ETTEEEEECCEESSSCBCCCEEEEETTTTEEEEE--CCC
T ss_pred CCCcccceEEEEeCCCCCEeECCCCC--C--cccccEEEE-ECCEEEEEcCCCCCCCccceEEEEcCCCCEEEEC--CCC
Confidence 1123456899999887665433332 1 112223333 4678998532 145699999875422212 122
Q ss_pred CCcccccCccccCeEEEccCceEEEEeCC-----CCeEEEEeCCCC
Q 020019 192 TPKEWYKNLVGLNGIVYHPDGFLIVIHTF-----SGNLFKIDIVDG 232 (332)
Q Consensus 192 ~~p~~~~~~~~~nGi~~~~dG~Lyva~~~-----~~~i~~id~~~~ 232 (332)
+.|. ...+.+.. ++.||+.-.. .+.++++|+++.
T Consensus 194 p~~r------~~~~~~~~-~~~iyv~GG~~~~~~~~~~~~yd~~~~ 232 (318)
T 2woz_A 194 KTPR------SMFGVAIH-KGKIVIAGGVTEDGLSASVEAFDLKTN 232 (318)
T ss_dssp SSCC------BSCEEEEE-TTEEEEEEEEETTEEEEEEEEEETTTC
T ss_pred CCCc------ccceEEEE-CCEEEEEcCcCCCCccceEEEEECCCC
Confidence 2111 12234443 5678876421 246788998865
|
| >1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS, membrane PR; 2.60A {Rattus norvegicus} SCOP: a.118.1.4 b.69.6.1 | Back alignment and structure |
|---|
Probab=83.14 E-value=31 Score=32.45 Aligned_cols=71 Identities=24% Similarity=0.431 Sum_probs=49.3
Q ss_pred cCcCCCccceEEEeCCCCeEEEEEeCcCCCccceEEEEECCCCcEEEEEecCCCCCCCCCccceEECCCCcEEEEe--CC
Q 020019 92 LELTGNGSLGLVLDHPRNRLLVVAADVFGNKYSAVAAYDLSTWNRLFLTQLSGPSDGKSCADDVTVDAEGNAYVTD--VT 169 (332)
Q Consensus 92 ~~~~~~~~~gi~vd~~~g~l~v~~~~~~~~~~~~l~~~d~~~g~~~~~~~l~~~~~~~~~~ndiavd~dG~lyvtd--~~ 169 (332)
|+....-|..|.+.+..|.+|+... .+.++.||+++|.....-+++. + .+|++. ..
T Consensus 254 pe~~~DFPvamqvs~kygviyviTK------~G~i~lyDleTgt~i~~nrIs~---------------~-~iF~t~~~~~ 311 (494)
T 1bpo_A 254 PEAQNDFPVAMQISEKHDVVFLITK------YGYIHLYDLETGTCIYMNRISG---------------E-TIFVTAPHEA 311 (494)
T ss_dssp TTSTTCCEEEEEEETTTTEEEEEET------TSEEEEEETTTCCEEEEEECCS---------------S-CEEEEEEETT
T ss_pred cccccCceeEEEecccCCEEEEEec------CceEEEEecccceeeeeecccC---------------C-ceEEecccCC
Confidence 4444457999999998899999975 5789999999999887666631 1 244432 33
Q ss_pred CCeEEEEcCCCceEE
Q 020019 170 GSKIWKVGVKGEFLS 184 (332)
Q Consensus 170 ~~~I~~v~~~g~~~~ 184 (332)
.+.|+.++.+|+...
T Consensus 312 ~~Gi~~Vnr~GqVl~ 326 (494)
T 1bpo_A 312 TAGIIGVNRKGQVLS 326 (494)
T ss_dssp TTEEEEEETTCEEEE
T ss_pred CCcEEEEccCceEEE
Confidence 456666666666543
|
| >2be1_A Serine/threonine-protein kinase/endoribonuclease; transcription; 2.98A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=82.75 E-value=27 Score=31.40 Aligned_cols=74 Identities=12% Similarity=0.096 Sum_probs=44.4
Q ss_pred CCCEEEEE-ecCCeEEEEECCCCCCCccceeeeEEec-ccCcCCCccce----EEE------eCCCCeEEEEEeCcCCCc
Q 020019 55 SGRRFIVS-FLDGGIGQVAVPDDYPPGTVLEEVTLVK-DLELTGNGSLG----LVL------DHPRNRLLVVAADVFGNK 122 (332)
Q Consensus 55 ~g~~~~~~-~~~g~I~~vd~~~~~~~~~~~~~~~~~~-~~~~~~~~~~g----i~v------d~~~g~l~v~~~~~~~~~ 122 (332)
++.+|+.. ..+|+|+.++..++.. .|.. -+.+...+|.- ..+ .. +|.+|+...
T Consensus 55 ~~~~~vv~p~~dG~l~a~~~~~G~~--------~~~~~~~~lv~~SP~~~~~~pvv~~~~~~~~-~g~Vy~Gs~------ 119 (339)
T 2be1_A 55 TYETLIIEPFGDGNIYYFNAHQGLQ--------KLPLSIRQLVSTSPLHLKTNIVVNDSGKIVE-DEKVYTGSM------ 119 (339)
T ss_dssp SSEEEEECCSTTTEEEEEETTTEEE--------EEEEEHHHHHTTCSEEEECC----------C-CEEEEECEE------
T ss_pred CCcEEEEEECCCCEEEEEECCCCcE--------EeeeccccceeccccccCCCceeeccccccc-CCEEEEEec------
Confidence 44566665 4689999999876641 2221 12211112211 112 13 388898875
Q ss_pred cceEEEEECCCCcEEEEEecC
Q 020019 123 YSAVAAYDLSTWNRLFLTQLS 143 (332)
Q Consensus 123 ~~~l~~~d~~~g~~~~~~~l~ 143 (332)
.++++.+|.++|+..+.....
T Consensus 120 ~g~l~ald~~tG~~~W~~~~~ 140 (339)
T 2be1_A 120 RTIMYTINMLNGEIISAFGPG 140 (339)
T ss_dssp EEEEEEEETTTCCEEEEESTT
T ss_pred CCEEEEEECCCCcEEEEEecC
Confidence 468999999999998877654
|
| >2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A* | Back alignment and structure |
|---|
Probab=81.27 E-value=44 Score=32.96 Aligned_cols=201 Identities=15% Similarity=0.115 Sum_probs=103.2
Q ss_pred ceEEcCCCCEEEEE-e---cCCeEEEEECCCCCCCccceeeeEEe-ccc--CcC-CCccceEEEeCCCCeEEEEEeCcCC
Q 020019 49 CAKWDDSGRRFIVS-F---LDGGIGQVAVPDDYPPGTVLEEVTLV-KDL--ELT-GNGSLGLVLDHPRNRLLVVAADVFG 120 (332)
Q Consensus 49 gia~d~~g~~~~~~-~---~~g~I~~vd~~~~~~~~~~~~~~~~~-~~~--~~~-~~~~~gi~vd~~~g~l~v~~~~~~~ 120 (332)
+.+..-++.+|+.. . ....++++|+.+.++ . .+. ..| ..+ ...-.++++-..+|+||+..+....
T Consensus 391 g~~~~~~~~iyv~GG~~~~~~~~v~~yd~~~~~W-----~--~~~~~~p~~~~p~~R~~hs~~~~~~~~~lyv~GG~~~~ 463 (695)
T 2zwa_A 391 GDVDVAGNDVFYMGGSNPYRVNEILQLSIHYDKI-----D--MKNIEVSSSEVPVARMCHTFTTISRNNQLLLIGGRKAP 463 (695)
T ss_dssp CEEEECSSCEEEECCBSSSBCCCEEEEEECSSCE-----E--EEECCCCCSCCCCCCBSCEEEEETTTTEEEEECCBSST
T ss_pred eEEEEECCEEEEECCCCCCCcCcEEEEECCCCeE-----E--EeccCCCCCCCCccccceEEEEEccCCEEEEEcCCCCC
Confidence 33333556777765 2 234699999987765 1 222 111 111 1233455555312889998543221
Q ss_pred -CccceEEEEECCCCcEEEEEecCCCCCCCCCccceEECCCCcEEEEeCC--CCeEEEEcCCCceEEEecCCCCCCcccc
Q 020019 121 -NKYSAVAAYDLSTWNRLFLTQLSGPSDGKSCADDVTVDAEGNAYVTDVT--GSKIWKVGVKGEFLSIISSPLFTPKEWY 197 (332)
Q Consensus 121 -~~~~~l~~~d~~~g~~~~~~~l~~~~~~~~~~ndiavd~dG~lyvtd~~--~~~I~~v~~~g~~~~~~~~~~~~~p~~~ 197 (332)
...+.+++||+.+.+......++ . .......++-.+|.||+---. .+.++++|+....=..+.. ....|.
T Consensus 464 ~~~~~dv~~yd~~t~~W~~~~~~p--~--~R~~h~~~~~~~~~iyv~GG~~~~~~v~~yd~~t~~W~~~~~-~g~~p~-- 536 (695)
T 2zwa_A 464 HQGLSDNWIFDMKTREWSMIKSLS--H--TRFRHSACSLPDGNVLILGGVTEGPAMLLYNVTEEIFKDVTP-KDEFFQ-- 536 (695)
T ss_dssp TCBCCCCEEEETTTTEEEECCCCS--B--CCBSCEEEECTTSCEEEECCBCSSCSEEEEETTTTEEEECCC-SSGGGG--
T ss_pred CCccccEEEEeCCCCcEEECCCCC--C--CcccceEEEEcCCEEEEECCCCCCCCEEEEECCCCceEEccC-CCCCCC--
Confidence 12456899999887654332221 1 123334455347789986321 1279999987542111111 111111
Q ss_pred cCccccCeEEEccC-ceEEEEeCC-------CCeEEEEeCCCCCCcccee--EEEEe-cCCCCC-CCCeEEEeCCCeEEE
Q 020019 198 KNLVGLNGIVYHPD-GFLIVIHTF-------SGNLFKIDIVDGVGEGEEI--KLIRV-AGGPLS-FGDGLELLSPTKLVV 265 (332)
Q Consensus 198 ~~~~~~nGi~~~~d-G~Lyva~~~-------~~~i~~id~~~~~~~~~~~--~~v~~-~g~~~~-~pdGi~~~~dG~l~v 265 (332)
...+...++++.+ +.||+.-.. .+.++++++.+.+- ...+ +.+.. + ..+ .-.++++-.+|+||+
T Consensus 537 -~r~~~~a~v~~~~~~~iyv~GG~~~~~~~~~~~v~~yd~~~~~w-~~~~~W~~~~~~p--~~~R~~~~~~~~~~~~iyv 612 (695)
T 2zwa_A 537 -NSLVSAGLEFDPVSKQGIILGGGFMDQTTVSDKAIIFKYDAENA-TEPITVIKKLQHP--LFQRYGSQIKYITPRKLLI 612 (695)
T ss_dssp -SCCBSCEEEEETTTTEEEEECCBCTTSSCBCCEEEEEEECTTCS-SCCEEEEEEEECG--GGCCBSCEEEEEETTEEEE
T ss_pred -cccceeEEEEeCCCCEEEEECCcCCCCCeeeCcEEEEEccCCcc-ccceEEEEcCCCC--CCCcccceEEEeCCCEEEE
Confidence 1234445777766 689987532 35689999987631 0011 22221 1 111 223455555589999
Q ss_pred Ee
Q 020019 266 AG 267 (332)
Q Consensus 266 a~ 267 (332)
.+
T Consensus 613 ~G 614 (695)
T 2zwa_A 613 VG 614 (695)
T ss_dssp EC
T ss_pred EC
Confidence 86
|
| >3hx6_A Type 4 fimbrial biogenesis protein PILY1; beta propeller, pilus protein, cell adhesion; 2.10A {Pseudomonas aeruginosa} | Back alignment and structure |
|---|
Probab=81.04 E-value=8.2 Score=37.29 Aligned_cols=56 Identities=16% Similarity=0.302 Sum_probs=39.3
Q ss_pred ccceEEEEECCCCcEEEEEecCCCCCCCCCccce----EECCCC-----cEEEEeCCCCeEEEEcCCCc
Q 020019 122 KYSAVAAYDLSTWNRLFLTQLSGPSDGKSCADDV----TVDAEG-----NAYVTDVTGSKIWKVGVKGE 181 (332)
Q Consensus 122 ~~~~l~~~d~~~g~~~~~~~l~~~~~~~~~~ndi----avd~dG-----~lyvtd~~~~~I~~v~~~g~ 181 (332)
....|+++|+++|++++.+...+. ...++++ .+|.|+ .+|+.|. .|.|||||..+.
T Consensus 221 ~~~~Lyv~d~~tG~li~~i~~~~~---~~~~~Gls~~~~~D~d~Dg~~D~~YaGDl-~GnlWRfDl~~~ 285 (570)
T 3hx6_A 221 DKAALLIIDMETGAITRKLEVTGR---TGVPNGLSSPRLADNNSDGVADYAYAGDL-QGNLWRFDLIAG 285 (570)
T ss_dssp CCEEEEEEETTTCCEEEEEEECCS---TTSCCCEEEEEEECTTSSSBCCEEEEEET-TSEEEEEECSCS
T ss_pred CccEEEEEECCCCceEEEEecCCC---CccCCccccceEEecCCCCceeEEEEEeC-CCcEEEEEcCCC
Confidence 346899999999999887776421 2334443 466653 3899995 699999997643
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 332 | ||||
| d1v04a_ | 340 | b.68.6.2 (A:) Serum paraoxonase/arylesterase 1, PO | 6e-07 | |
| d2dg1a1 | 319 | b.68.6.1 (A:6-324) Lactonase Drp35 {Staphylococcus | 0.001 |
| >d1v04a_ b.68.6.2 (A:) Serum paraoxonase/arylesterase 1, PON1 {Rabit (Oryctolagus cuniculus) [TaxId: 9986]} Length = 340 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: Serum paraoxonase/arylesterase 1, PON1 domain: Serum paraoxonase/arylesterase 1, PON1 species: Rabit (Oryctolagus cuniculus) [TaxId: 9986]
Score = 48.2 bits (114), Expect = 6e-07
Identities = 45/292 (15%), Positives = 86/292 (29%), Gaps = 41/292 (14%)
Query: 53 DDSGRRFIVSFLDGGIGQVAVPDDYPPGTVL-----EEVTLVKDLELTGNGSLGL----- 102
+G FI S L PD G +L E+ V +LE+ GN
Sbjct: 43 LPNGLAFISSGLKYPGIMSFDPD--KSGKILLMDLNEKEPAVSELEIIGNTLDISSFNPH 100
Query: 103 -----VLDHPRNRLLVVAADVFGNKYSAVAAYDLSTWNRLFLTQLSGPSDGKSCADDVTV 157
+ D LLVV + V + + L L + +D+
Sbjct: 101 GISTFIDDDNTVYLLVVNHPGSSST-VEVFKFQEEEKSLLHLKTIRHKLLP--SVNDIVA 157
Query: 158 DAEGNAYVTDVTGSKIWKVGVKGEFLSIISSPLF-----TPKEWYKNLVGLNGIVYHPDG 212
+ Y T+ + L + S + + + NGI PDG
Sbjct: 158 VGPEHFYATNDHYFIDPYLKSWEMHLGLAWSFVTYYSPNDVRVVAEGFDFANGINISPDG 217
Query: 213 -FLIVIHTFSGNLFKIDIVDGVGEGEEIKLIRVAGGP--------------LSFGDGLEL 257
++ + + + + ++++ +G+ +
Sbjct: 218 KYVYIAELLAHKIHVYEK-HANWTLTPLRVLSFDTLVDNISVDPVTGDLWVGCHPNGMRI 276
Query: 258 LSPTKLVVAGNPSARLVESSDGWETAAVVAKFSGPVHRLATAATVKDGRVYL 309
G+ R+ + VV +G V + +T A V G++ +
Sbjct: 277 FFYDAENPPGSEVLRIQDILSEEPKVTVVYAENGTVLQGSTVAAVYKGKLLI 328
|
| >d2dg1a1 b.68.6.1 (A:6-324) Lactonase Drp35 {Staphylococcus aureus [TaxId: 1280]} Length = 319 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: SGL-like domain: Lactonase Drp35 species: Staphylococcus aureus [TaxId: 1280]
Score = 37.8 bits (86), Expect = 0.001
Identities = 12/65 (18%), Positives = 22/65 (33%), Gaps = 9/65 (13%)
Query: 155 VTVDAEGNAYVTDVTGSKIWKVGVKGEFLSIISSPLFTPKEWYKNLVGLNGIVYHPDGFL 214
+ D +G ++ DV I+K+ + + + I H DG L
Sbjct: 45 LNFDRQGQLFLLDVFEGNIFKINPETKEIKRPFVSH---------KANPAAIKIHKDGRL 95
Query: 215 IVIHT 219
V +
Sbjct: 96 FVCYL 100
|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 332 | |||
| d2dg1a1 | 319 | Lactonase Drp35 {Staphylococcus aureus [TaxId: 128 | 99.96 | |
| d1pjxa_ | 314 | Diisopropylfluorophosphatase (phosphotriesterase, | 99.95 | |
| d2ghsa1 | 295 | Regucalcin {Agrobacterium tumefaciens [TaxId: 358] | 99.94 | |
| d2p4oa1 | 302 | Hypothetical protein All0351 homologue {Nostoc pun | 99.93 | |
| d1rwia_ | 260 | Serine/threonine-protein kinase PknD {Mycobacteriu | 99.91 | |
| d1q7fa_ | 279 | Brain tumor cg10719-pa {Fruit fly (Drosophila mela | 99.89 | |
| d1rwia_ | 260 | Serine/threonine-protein kinase PknD {Mycobacteriu | 99.85 | |
| d1pjxa_ | 314 | Diisopropylfluorophosphatase (phosphotriesterase, | 99.79 | |
| d1q7fa_ | 279 | Brain tumor cg10719-pa {Fruit fly (Drosophila mela | 99.75 | |
| d2dg1a1 | 319 | Lactonase Drp35 {Staphylococcus aureus [TaxId: 128 | 99.74 | |
| d1npea_ | 263 | Nidogen {Mouse (Mus musculus) [TaxId: 10090]} | 99.72 | |
| d1ijqa1 | 266 | Low density lipoprotein (LDL) receptor {Human (Hom | 99.68 | |
| d2p4oa1 | 302 | Hypothetical protein All0351 homologue {Nostoc pun | 99.65 | |
| d1npea_ | 263 | Nidogen {Mouse (Mus musculus) [TaxId: 10090]} | 99.65 | |
| d2ghsa1 | 295 | Regucalcin {Agrobacterium tumefaciens [TaxId: 358] | 99.62 | |
| d1v04a_ | 340 | Serum paraoxonase/arylesterase 1, PON1 {Rabit (Ory | 99.62 | |
| d1ijqa1 | 266 | Low density lipoprotein (LDL) receptor {Human (Hom | 99.61 | |
| d1l0qa2 | 301 | Surface layer protein {Archaeon Methanosarcina maz | 99.5 | |
| d1ri6a_ | 333 | Putative isomerase YbhE {Escherichia coli [TaxId: | 99.33 | |
| d1jofa_ | 365 | 3-carboxy-cis,cis-mucoante lactonizing enzyme {Neu | 99.31 | |
| d1l0qa2 | 301 | Surface layer protein {Archaeon Methanosarcina maz | 99.31 | |
| d1qksa2 | 432 | C-terminal (heme d1) domain of cytochrome cd1-nitr | 99.21 | |
| d1jofa_ | 365 | 3-carboxy-cis,cis-mucoante lactonizing enzyme {Neu | 99.2 | |
| d1pbyb_ | 337 | Quinohemoprotein amine dehydrogenase B chain {Para | 99.15 | |
| d1ri6a_ | 333 | Putative isomerase YbhE {Escherichia coli [TaxId: | 99.13 | |
| d1pbyb_ | 337 | Quinohemoprotein amine dehydrogenase B chain {Para | 99.12 | |
| d1crua_ | 450 | Soluble quinoprotein glucose dehydrogenase {Acinet | 99.12 | |
| d1jmxb_ | 346 | Quinohemoprotein amine dehydrogenase B chain {Pseu | 99.04 | |
| d1mdah_ | 368 | Methylamine dehydrogenase, H-chain {Paracoccus den | 99.01 | |
| d2bbkh_ | 355 | Methylamine dehydrogenase, H-chain {Paracoccus den | 98.99 | |
| d1jmxb_ | 346 | Quinohemoprotein amine dehydrogenase B chain {Pseu | 98.98 | |
| d1hzua2 | 426 | C-terminal (heme d1) domain of cytochrome cd1-nitr | 98.96 | |
| d1qksa2 | 432 | C-terminal (heme d1) domain of cytochrome cd1-nitr | 98.86 | |
| d1qnia2 | 441 | Nitrous oxide reductase, N-terminal domain {Pseudo | 98.83 | |
| d2madh_ | 373 | Methylamine dehydrogenase, H-chain {Gram negative | 98.76 | |
| d1gxra_ | 337 | Groucho/tle1, C-terminal domain {Human (Homo sapie | 98.75 | |
| d1k8kc_ | 371 | Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taur | 98.7 | |
| d1nr0a1 | 311 | Actin interacting protein 1 {Nematode (Caenorhabdi | 98.69 | |
| d1v04a_ | 340 | Serum paraoxonase/arylesterase 1, PON1 {Rabit (Ory | 98.68 | |
| d1gxra_ | 337 | Groucho/tle1, C-terminal domain {Human (Homo sapie | 98.65 | |
| d1hzua2 | 426 | C-terminal (heme d1) domain of cytochrome cd1-nitr | 98.61 | |
| d1nr0a1 | 311 | Actin interacting protein 1 {Nematode (Caenorhabdi | 98.6 | |
| d1qnia2 | 441 | Nitrous oxide reductase, N-terminal domain {Pseudo | 98.57 | |
| d1nr0a2 | 299 | Actin interacting protein 1 {Nematode (Caenorhabdi | 98.54 | |
| d2madh_ | 373 | Methylamine dehydrogenase, H-chain {Gram negative | 98.53 | |
| d1crua_ | 450 | Soluble quinoprotein glucose dehydrogenase {Acinet | 98.48 | |
| d1mdah_ | 368 | Methylamine dehydrogenase, H-chain {Paracoccus den | 98.43 | |
| d1k32a3 | 360 | Tricorn protease domain 2 {Archaeon Thermoplasma a | 98.35 | |
| d2bbkh_ | 355 | Methylamine dehydrogenase, H-chain {Paracoccus den | 98.31 | |
| d1k8kc_ | 371 | Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taur | 98.3 | |
| d1fwxa2 | 459 | Nitrous oxide reductase, N-terminal domain {Paraco | 98.28 | |
| d1vyhc1 | 317 | Platelet-activating factor acetylhydrolase IB subu | 98.06 | |
| d1tbga_ | 340 | beta1-subunit of the signal-transducing G protein | 98.06 | |
| d1erja_ | 388 | Tup1, C-terminal domain {Baker's yeast (Saccharomy | 98.03 | |
| d1nr0a2 | 299 | Actin interacting protein 1 {Nematode (Caenorhabdi | 97.94 | |
| d1tbga_ | 340 | beta1-subunit of the signal-transducing G protein | 97.84 | |
| d1pgua1 | 325 | Actin interacting protein 1 {Baker's yeast (Saccha | 97.73 | |
| d1pgua1 | 325 | Actin interacting protein 1 {Baker's yeast (Saccha | 97.7 | |
| d1k32a3 | 360 | Tricorn protease domain 2 {Archaeon Thermoplasma a | 97.69 | |
| d1erja_ | 388 | Tup1, C-terminal domain {Baker's yeast (Saccharomy | 97.68 | |
| d1vyhc1 | 317 | Platelet-activating factor acetylhydrolase IB subu | 97.64 | |
| d1k32a2 | 281 | Tricorn protease N-terminal domain {Archaeon Therm | 97.36 | |
| d1sq9a_ | 393 | Antiviral protein Ski8 (Ski8p) {Baker's yeast (Sac | 97.16 | |
| d1h6la_ | 353 | Thermostable phytase (3-phytase) {Bacillus amyloli | 97.15 | |
| d1fwxa2 | 459 | Nitrous oxide reductase, N-terminal domain {Paraco | 97.1 | |
| d1nexb2 | 355 | Cdc4 propeller domain {Baker's yeast (Saccharomyce | 96.98 | |
| d2ovrb2 | 342 | F-box/WD repeat-containing protein 7, FBXW7 {Human | 96.78 | |
| d1sq9a_ | 393 | Antiviral protein Ski8 (Ski8p) {Baker's yeast (Sac | 96.6 | |
| d1pgua2 | 287 | Actin interacting protein 1 {Baker's yeast (Saccha | 96.49 | |
| d1yfqa_ | 342 | Cell cycle arrest protein BUB3 {Baker's yeast (Sac | 95.86 | |
| d2ovrb2 | 342 | F-box/WD repeat-containing protein 7, FBXW7 {Human | 95.83 | |
| d2bgra1 | 470 | Dipeptidyl peptidase IV/CD26, N-terminal domain {P | 95.71 | |
| d1h6la_ | 353 | Thermostable phytase (3-phytase) {Bacillus amyloli | 95.49 | |
| d2ad6a1 | 571 | Methanol dehydrogenase, heavy chain {Methylophilus | 95.44 | |
| d1nexb2 | 355 | Cdc4 propeller domain {Baker's yeast (Saccharomyce | 95.39 | |
| d1xfda1 | 465 | Dipeptidyl aminopeptidase-like protein 6, DPP6, N- | 95.17 | |
| d1flga_ | 582 | Ethanol dehydrogenase {Pseudomonas aeruginosa [Tax | 95.08 | |
| d1kv9a2 | 560 | Quinoprotein alcohol dehydrogenase, N-terminal dom | 94.83 | |
| d1tl2a_ | 235 | Tachylectin-2 {Japanese horseshoe crab (Tachypleus | 94.61 | |
| d1pgua2 | 287 | Actin interacting protein 1 {Baker's yeast (Saccha | 94.4 | |
| d1tl2a_ | 235 | Tachylectin-2 {Japanese horseshoe crab (Tachypleus | 94.24 | |
| d2bgra1 | 470 | Dipeptidyl peptidase IV/CD26, N-terminal domain {P | 94.21 | |
| d1k3ia3 | 387 | Galactose oxidase, central domain {Fungi (Fusarium | 94.15 | |
| d1yfqa_ | 342 | Cell cycle arrest protein BUB3 {Baker's yeast (Sac | 94.12 | |
| d1w6sa_ | 596 | Methanol dehydrogenase, heavy chain {Methylobacter | 94.0 | |
| d2ad6a1 | 571 | Methanol dehydrogenase, heavy chain {Methylophilus | 93.53 | |
| d1k3ia3 | 387 | Galactose oxidase, central domain {Fungi (Fusarium | 93.19 | |
| d1flga_ | 582 | Ethanol dehydrogenase {Pseudomonas aeruginosa [Tax | 92.89 | |
| d1k32a2 | 281 | Tricorn protease N-terminal domain {Archaeon Therm | 92.83 | |
| d1kb0a2 | 573 | Quinoprotein alcohol dehydrogenase, N-terminal dom | 92.61 | |
| d1xfda1 | 465 | Dipeptidyl aminopeptidase-like protein 6, DPP6, N- | 92.1 | |
| d1kv9a2 | 560 | Quinoprotein alcohol dehydrogenase, N-terminal dom | 91.78 | |
| d1w6sa_ | 596 | Methanol dehydrogenase, heavy chain {Methylobacter | 90.56 | |
| d2ebsa1 | 427 | Oligoxyloglucan reducing end-specific cellobiohydr | 89.83 | |
| d2hqsa1 | 269 | TolB, C-terminal domain {Escherichia coli [TaxId: | 89.3 | |
| d1kb0a2 | 573 | Quinoprotein alcohol dehydrogenase, N-terminal dom | 88.32 | |
| d1utca2 | 327 | Clathrin heavy-chain terminal domain {Rat (Rattus | 87.71 |
| >d2dg1a1 b.68.6.1 (A:6-324) Lactonase Drp35 {Staphylococcus aureus [TaxId: 1280]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: SGL-like domain: Lactonase Drp35 species: Staphylococcus aureus [TaxId: 1280]
Probab=99.96 E-value=5.3e-27 Score=213.80 Aligned_cols=246 Identities=18% Similarity=0.138 Sum_probs=171.6
Q ss_pred eEEEecCCccccceEEcCCCCEEEEEecCCeEEEEECCCCCCCccceeeeEEecccCcCCCccceEEEeCCCCeEEEEEe
Q 020019 37 VYHYHSSSFFRECAKWDDSGRRFIVSFLDGGIGQVAVPDDYPPGTVLEEVTLVKDLELTGNGSLGLVLDHPRNRLLVVAA 116 (332)
Q Consensus 37 ~i~~~~~~~~pegia~d~~g~~~~~~~~~g~I~~vd~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~vd~~~g~l~v~~~ 116 (332)
-+.+...+..+||++||++|++|+++...++|+|+++++++. . .+... . ...|+||+++++ |+|||++.
T Consensus 32 ~~~~~~~~~~lEG~~~D~~G~Ly~~D~~~g~I~ri~p~g~~~-----~--~~~~~-~--~~~p~gla~~~d-G~l~va~~ 100 (319)
T d2dg1a1 32 WLEISKKGLQLEGLNFDRQGQLFLLDVFEGNIFKINPETKEI-----K--RPFVS-H--KANPAAIKIHKD-GRLFVCYL 100 (319)
T ss_dssp EEEEESSCCCEEEEEECTTSCEEEEETTTCEEEEECTTTCCE-----E--EEEEC-S--SSSEEEEEECTT-SCEEEEEC
T ss_pred cEEeccCCcCcEeCEECCCCCEEEEECCCCEEEEEECCCCeE-----E--EEEeC-C--CCCeeEEEECCC-CCEEEEec
Confidence 355566777889999999999999998899999999986642 1 23211 1 137899999996 99999975
Q ss_pred CcCCCccceEEEEECCCCcEEEEEecCCCCCCCCCccceEECCCCcEEEEeCC------CCeEEEEcCCCceEEEecCCC
Q 020019 117 DVFGNKYSAVAAYDLSTWNRLFLTQLSGPSDGKSCADDVTVDAEGNAYVTDVT------GSKIWKVGVKGEFLSIISSPL 190 (332)
Q Consensus 117 ~~~~~~~~~l~~~d~~~g~~~~~~~l~~~~~~~~~~ndiavd~dG~lyvtd~~------~~~I~~v~~~g~~~~~~~~~~ 190 (332)
.... ....+..++.++++......- ......|||+++|++|++|++|.. .+.+++++++|+....+..
T Consensus 101 ~~~~-~~~~i~~~~~~~~~~~~~~~~---~~~~~~~nd~~~d~~G~l~vtd~~~~~~~~~g~v~~~~~dg~~~~~~~~-- 174 (319)
T d2dg1a1 101 GDFK-STGGIFAATENGDNLQDIIED---LSTAYCIDDMVFDSKGGFYFTDFRGYSTNPLGGVYYVSPDFRTVTPIIQ-- 174 (319)
T ss_dssp TTSS-SCCEEEEECTTSCSCEEEECS---SSSCCCEEEEEECTTSCEEEEECCCBTTBCCEEEEEECTTSCCEEEEEE--
T ss_pred CCCc-cceeEEEEcCCCceeeeeccC---CCcccCCcceeEEeccceeecccccccccCcceeEEEecccceeEEEee--
Confidence 4211 245678888877666544332 123468999999999999999865 4579999999875433211
Q ss_pred CCCcccccCccccCeEEEccCc-eEEEEeCCCCeEEEEeCCCCCCccc-eeEEEEecCCCCCCCCeEEEeCCCeEEEEeC
Q 020019 191 FTPKEWYKNLVGLNGIVYHPDG-FLIVIHTFSGNLFKIDIVDGVGEGE-EIKLIRVAGGPLSFGDGLELLSPTKLVVAGN 268 (332)
Q Consensus 191 ~~~p~~~~~~~~~nGi~~~~dG-~Lyva~~~~~~i~~id~~~~~~~~~-~~~~v~~~g~~~~~pdGi~~~~dG~l~va~~ 268 (332)
....||||++++|| +||++++.+++|++++++....... ....+...-.....||||++|++|+|||++.
T Consensus 175 --------~~~~pnGia~s~dg~~lyvad~~~~~I~~~d~~~~g~~~~~~~~~~~~~~~~~~~PdGl~vD~~G~l~Va~~ 246 (319)
T d2dg1a1 175 --------NISVANGIALSTDEKVLWVTETTANRLHRIALEDDGVTIQPFGATIPYYFTGHEGPDSCCIDSDDNLYVAMY 246 (319)
T ss_dssp --------EESSEEEEEECTTSSEEEEEEGGGTEEEEEEECTTSSSEEEEEEEEEEECCSSSEEEEEEEBTTCCEEEEEE
T ss_pred --------ccceeeeeeeccccceEEEecccCCceEEEEEcCCCceeccccceeeeccCCccceeeeeEcCCCCEEEEEc
Confidence 23568999999999 8999999999999999874321001 1111111112345799999999999999985
Q ss_pred C-ceEEEEcCCCceEEEEEeeecCCC-----cccceEEEE--ECCeEEEEE
Q 020019 269 P-SARLVESSDGWETAAVVAKFSGPV-----HRLATAATV--KDGRVYLNH 311 (332)
Q Consensus 269 ~-~~~~v~~~dg~~~~~~~~~~~~~~-----~~~pt~va~--~~g~lyv~~ 311 (332)
. ....++.++|. ++..+..|. ...++++++ ...++|++.
T Consensus 247 ~~g~V~~~~p~G~----~l~~i~~P~~~~~~~~~~~~~~~~~~~~~~~~t~ 293 (319)
T d2dg1a1 247 GQGRVLVFNKRGY----PIGQILIPGRDEGHMLRSTHPQFIPGTNQLIICS 293 (319)
T ss_dssp TTTEEEEECTTSC----EEEEEECTTGGGTCSCBCCEEEECTTSCEEEEEE
T ss_pred CCCEEEEECCCCc----EEEEEeCCCcCCCcCceeeeEEEeCCCCEEEEEc
Confidence 3 33446778883 333333332 346789999 345777754
|
| >d1pjxa_ b.68.6.1 (A:) Diisopropylfluorophosphatase (phosphotriesterase, DFP) {Squid (Loligo vulgaris) [TaxId: 6622]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: SGL-like domain: Diisopropylfluorophosphatase (phosphotriesterase, DFP) species: Squid (Loligo vulgaris) [TaxId: 6622]
Probab=99.95 E-value=1.1e-26 Score=211.44 Aligned_cols=245 Identities=18% Similarity=0.182 Sum_probs=165.2
Q ss_pred EEecCCc-cccceEEcCCCCEEEEEe-------cCCeEEEEECCCCCCCccceeeeEEecccCcC--CCccceEEEeCCC
Q 020019 39 HYHSSSF-FRECAKWDDSGRRFIVSF-------LDGGIGQVAVPDDYPPGTVLEEVTLVKDLELT--GNGSLGLVLDHPR 108 (332)
Q Consensus 39 ~~~~~~~-~pegia~d~~g~~~~~~~-------~~g~I~~vd~~~~~~~~~~~~~~~~~~~~~~~--~~~~~gi~vd~~~ 108 (332)
....+++ .|||+++|++|++|+++. .+++|+|+++.++.. +....+... +..|.||+++++.
T Consensus 11 ~~v~~~~~g~EGpa~d~dG~ly~~~~~~~~~~~~~g~I~r~d~~~~~~--------~~~~~~~~~~~~g~P~Gl~~~~dg 82 (314)
T d1pjxa_ 11 TKVTEDIPGAEGPVFDKNGDFYIVAPEVEVNGKPAGEILRIDLKTGKK--------TVICKPEVNGYGGIPAGCQCDRDA 82 (314)
T ss_dssp EEEECCCTTCEEEEECTTSCEEEEETTCEETTEECCEEEEECTTTCCE--------EEEECCEETTEECCEEEEEECSSS
T ss_pred EEeecCCCCCeEeEEeCCCCEEEEECccccccccCCEEEEEECCCCcE--------EEEECCccccCCCcceeEEEeCCC
Confidence 3344455 899999999999999862 257899999987652 222222221 1358999999974
Q ss_pred CeEEEEEeCcCCCccceEEEEECCCCcEEEEEecCCCCCCCCCccceEECCCCcEEEEeCC---------------CCeE
Q 020019 109 NRLLVVAADVFGNKYSAVAAYDLSTWNRLFLTQLSGPSDGKSCADDVTVDAEGNAYVTDVT---------------GSKI 173 (332)
Q Consensus 109 g~l~v~~~~~~~~~~~~l~~~d~~~g~~~~~~~l~~~~~~~~~~ndiavd~dG~lyvtd~~---------------~~~I 173 (332)
+++|+++. ...+.++|++++... .......+.....|||+++|++|++||||.. .++|
T Consensus 83 ~~l~vad~------~~~i~~~~~~g~~~~-~~~~~~~g~~~~~pndl~~d~~G~lyvtd~~~~~~~~~~~~~~~~~~G~v 155 (314)
T d1pjxa_ 83 NQLFVADM------RLGLLVVQTDGTFEE-IAKKDSEGRRMQGCNDCAFDYEGNLWITAPAGEVAPADYTRSMQEKFGSI 155 (314)
T ss_dssp SEEEEEET------TTEEEEEETTSCEEE-CCSBCTTSCBCBCCCEEEECTTSCEEEEECBCBCTTSCCCBTTSSSCEEE
T ss_pred CEEEEEEC------CCeEEEEeCCCcEEE-EEeccccccccCCCcEEEECCCCCEEEecCccCcccccccceeccCCceE
Confidence 57888875 246888998754332 2222111111346999999999999999853 4689
Q ss_pred EEEcCCCceEEEecCCCCCCcccccCccccCeEEEccCc-----eEEEEeCCCCeEEEEeCCCCCCccceeEEEEecCCC
Q 020019 174 WKVGVKGEFLSIISSPLFTPKEWYKNLVGLNGIVYHPDG-----FLIVIHTFSGNLFKIDIVDGVGEGEEIKLIRVAGGP 248 (332)
Q Consensus 174 ~~v~~~g~~~~~~~~~~~~~p~~~~~~~~~nGi~~~~dG-----~Lyva~~~~~~i~~id~~~~~~~~~~~~~v~~~g~~ 248 (332)
|+++++|+...+.. .+..||||++++++ +|||+++.+++|++++++....-.........++..
T Consensus 156 ~~~~~dg~~~~~~~-----------~~~~pNGi~~~~d~d~~~~~lyv~d~~~~~i~~~d~~~~g~~~~~~~~~~~~~~~ 224 (314)
T d1pjxa_ 156 YCFTTDGQMIQVDT-----------AFQFPNGIAVRHMNDGRPYQLIVAETPTKKLWSYDIKGPAKIENKKVWGHIPGTH 224 (314)
T ss_dssp EEECTTSCEEEEEE-----------EESSEEEEEEEECTTSCEEEEEEEETTTTEEEEEEEEETTEEEEEEEEEECCCCS
T ss_pred EEEeecCceeEeeC-----------CcceeeeeEECCCCCcceeEEEEEeecccceEEeeccCccccceeeEEEEccccc
Confidence 99999998765542 23568999998875 699999999999999876331100011112333334
Q ss_pred CCCCCeEEEeCCCeEEEEeCCc-eEEEEcCCCceEEEEEeeecCCCcccceEEEE-E-CCeEEEEEec
Q 020019 249 LSFGDGLELLSPTKLVVAGNPS-ARLVESSDGWETAAVVAKFSGPVHRLATAATV-K-DGRVYLNHML 313 (332)
Q Consensus 249 ~~~pdGi~~~~dG~l~va~~~~-~~~v~~~dg~~~~~~~~~~~~~~~~~pt~va~-~-~g~lyv~~~~ 313 (332)
...||||++|++|+|||++... ...++.+++.+ +...+..| ...|++++| . +++|||+...
T Consensus 225 ~~~pdGiavD~~GnlyVa~~~~g~I~~~dp~~g~---~~~~i~~p-~~~~t~~afg~d~~~lyVt~~~ 288 (314)
T d1pjxa_ 225 EGGADGMDFDEDNNLLVANWGSSHIEVFGPDGGQ---PKMRIRCP-FEKPSNLHFKPQTKTIFVTEHE 288 (314)
T ss_dssp SCEEEEEEEBTTCCEEEEEETTTEEEEECTTCBS---CSEEEECS-SSCEEEEEECTTSSEEEEEETT
T ss_pred cccceeeEEecCCcEEEEEcCCCEEEEEeCCCCE---EEEEEECC-CCCEEEEEEeCCCCEEEEEECC
Confidence 4679999999999999998433 33456666522 33333334 467999999 4 3579997543
|
| >d2ghsa1 b.68.6.1 (A:20-314) Regucalcin {Agrobacterium tumefaciens [TaxId: 358]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: SGL-like domain: Regucalcin species: Agrobacterium tumefaciens [TaxId: 358]
Probab=99.94 E-value=3.5e-25 Score=199.58 Aligned_cols=250 Identities=15% Similarity=0.166 Sum_probs=180.0
Q ss_pred cCCccccceEEcC-CCCEEEEEecCCeEEEEECCCCCCCccceeeeEEecccCcCCCccceEEEeCCCCeEEEEEeCcCC
Q 020019 42 SSSFFRECAKWDD-SGRRFIVSFLDGGIGQVAVPDDYPPGTVLEEVTLVKDLELTGNGSLGLVLDHPRNRLLVVAADVFG 120 (332)
Q Consensus 42 ~~~~~pegia~d~-~g~~~~~~~~~g~I~~vd~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~vd~~~g~l~v~~~~~~~ 120 (332)
.....-||+.||+ ++++|++++..++|+++++++++. .....|. .+.+++.+++ |+||++..
T Consensus 15 ~~~~LgEgp~wd~~~~~l~wvDi~~~~I~r~d~~~g~~--------~~~~~~~----~~~~i~~~~d-g~l~va~~---- 77 (295)
T d2ghsa1 15 TPMLLGEGPTFDPASGTAWWFNILERELHELHLASGRK--------TVHALPF----MGSALAKISD-SKQLIASD---- 77 (295)
T ss_dssp SCCSBEEEEEEETTTTEEEEEEGGGTEEEEEETTTTEE--------EEEECSS----CEEEEEEEET-TEEEEEET----
T ss_pred CCCeeeeCCeEECCCCEEEEEECCCCEEEEEECCCCeE--------EEEECCC----CcEEEEEecC-CCEEEEEe----
Confidence 3444679999997 567888898899999999987752 2332333 5678898886 99999864
Q ss_pred CccceEEEEECCCCcEEEEEecCCCCCCCCCccceEECCCCcEEEEeCC------CCeEEEEcCCCceEEEecCCCCCCc
Q 020019 121 NKYSAVAAYDLSTWNRLFLTQLSGPSDGKSCADDVTVDAEGNAYVTDVT------GSKIWKVGVKGEFLSIISSPLFTPK 194 (332)
Q Consensus 121 ~~~~~l~~~d~~~g~~~~~~~l~~~~~~~~~~ndiavd~dG~lyvtd~~------~~~I~~v~~~g~~~~~~~~~~~~~p 194 (332)
..++.||+++++......... ......+||+++|++|++|+++.. .+.+++++ +|+...+..
T Consensus 78 ---~gl~~~d~~tg~~~~l~~~~~-~~~~~~~nd~~vd~~G~iw~~~~~~~~~~~~g~l~~~~-~g~~~~~~~------- 145 (295)
T d2ghsa1 78 ---DGLFLRDTATGVLTLHAELES-DLPGNRSNDGRMHPSGALWIGTMGRKAETGAGSIYHVA-KGKVTKLFA------- 145 (295)
T ss_dssp ---TEEEEEETTTCCEEEEECSST-TCTTEEEEEEEECTTSCEEEEEEETTCCTTCEEEEEEE-TTEEEEEEE-------
T ss_pred ---CccEEeecccceeeEEeeeec-CCCcccceeeEECCCCCEEEEeccccccccceeEeeec-CCcEEEEee-------
Confidence 368999999998876655432 222467999999999999999742 45677775 456544332
Q ss_pred ccccCccccCeEEEccCc-eEEEEeCCCCeEEEEeCCCCC--CccceeEEEEecCCCCCCCCeEEEeCCCeEEEEeCCc-
Q 020019 195 EWYKNLVGLNGIVYHPDG-FLIVIHTFSGNLFKIDIVDGV--GEGEEIKLIRVAGGPLSFGDGLELLSPTKLVVAGNPS- 270 (332)
Q Consensus 195 ~~~~~~~~~nGi~~~~dG-~Lyva~~~~~~i~~id~~~~~--~~~~~~~~v~~~g~~~~~pdGi~~~~dG~l~va~~~~- 270 (332)
....+||+++++|+ .+|++++.+++|++++.+... ..++....+... .....||||++|++|+|||+....
T Consensus 146 ----~~~~~Ng~~~s~d~~~l~~~dt~~~~I~~~~~d~~~~~~~~~~~~~~~~~-~~~g~pdG~~vD~~GnlWva~~~~g 220 (295)
T d2ghsa1 146 ----DISIPNSICFSPDGTTGYFVDTKVNRLMRVPLDARTGLPTGKAEVFIDST-GIKGGMDGSVCDAEGHIWNARWGEG 220 (295)
T ss_dssp ----EESSEEEEEECTTSCEEEEEETTTCEEEEEEBCTTTCCBSSCCEEEEECT-TSSSEEEEEEECTTSCEEEEEETTT
T ss_pred ----ccCCcceeeecCCCceEEEeecccceeeEeeecccccccccceEEEeccC-cccccccceEEcCCCCEEeeeeCCC
Confidence 23468999999999 899999999999999876321 111222233443 234679999999999999997443
Q ss_pred eEEEEcCCCceEEEEEeeecCCCcccceEEEEE---CCeEEE-EEecCcccc-CCccceeeeeec
Q 020019 271 ARLVESSDGWETAAVVAKFSGPVHRLATAATVK---DGRVYL-NHMLGFGYP-KKKHALVEAVFS 330 (332)
Q Consensus 271 ~~~v~~~dg~~~~~~~~~~~~~~~~~pt~va~~---~g~lyv-~~~~g~~~~-~~~~~~~~~~~~ 330 (332)
...++.++| +++..+..|. ..||+++|. .++||| +.+.+++-. .+++|.+|.+|.
T Consensus 221 ~V~~~dp~G----~~~~~i~lP~-~~~T~~~FGG~d~~~LyvTta~~~~~~~~~~~~p~~G~l~~ 280 (295)
T d2ghsa1 221 AVDRYDTDG----NHIARYEVPG-KQTTCPAFIGPDASRLLVTSAREHLDDDAITANPQHGLTFE 280 (295)
T ss_dssp EEEEECTTC----CEEEEEECSC-SBEEEEEEESTTSCEEEEEEBCTTCCHHHHHHCTTTTCEEE
T ss_pred ceEEecCCC----cEeeEecCCC-CceEEEEEeCCCCCEEEEEECCcCCChhHhccCCCCceEEE
Confidence 344577888 4455555553 579999993 379999 466666544 567788888885
|
| >d2p4oa1 b.68.6.3 (A:4-305) Hypothetical protein All0351 homologue {Nostoc punctiforme [TaxId: 272131]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: All0351-like domain: Hypothetical protein All0351 homologue species: Nostoc punctiforme [TaxId: 272131]
Probab=99.93 E-value=6.9e-24 Score=191.17 Aligned_cols=261 Identities=15% Similarity=0.105 Sum_probs=176.5
Q ss_pred eEEEecCCccccceEEcCCCCEEEEEecCCeEEEEECCCCCCCccceeeeEEecccCcCCCccceEEEeCCCCeEEEEEe
Q 020019 37 VYHYHSSSFFRECAKWDDSGRRFIVSFLDGGIGQVAVPDDYPPGTVLEEVTLVKDLELTGNGSLGLVLDHPRNRLLVVAA 116 (332)
Q Consensus 37 ~i~~~~~~~~pegia~d~~g~~~~~~~~~g~I~~vd~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~vd~~~g~l~v~~~ 116 (332)
++.--..+.+||++++++||++|+++...++|+++++++.. + .+...+ ..|+|++++++ |+||++..
T Consensus 20 v~~~~p~~~~~e~iAv~pdG~l~vt~~~~~~I~~i~p~g~~------~--~~~~~~----~~~~gla~~~d-G~l~v~~~ 86 (302)
T d2p4oa1 20 IITSFPVNTFLENLASAPDGTIFVTNHEVGEIVSITPDGNQ------Q--IHATVE----GKVSGLAFTSN-GDLVATGW 86 (302)
T ss_dssp EEEEECTTCCEEEEEECTTSCEEEEETTTTEEEEECTTCCE------E--EEEECS----SEEEEEEECTT-SCEEEEEE
T ss_pred EEEECCCCCCcCCEEECCCCCEEEEeCCCCEEEEEeCCCCE------E--EEEcCC----CCcceEEEcCC-CCeEEEec
Confidence 34433455689999999999999999889999999987432 1 233222 27899999996 99999986
Q ss_pred CcCCCccceEEEEE--CCCCcEEEEEecCCCCCCCCCccceEECCCCcEEEEeCCCCeEEEEcCCCceE-EEecCCCCCC
Q 020019 117 DVFGNKYSAVAAYD--LSTWNRLFLTQLSGPSDGKSCADDVTVDAEGNAYVTDVTGSKIWKVGVKGEFL-SIISSPLFTP 193 (332)
Q Consensus 117 ~~~~~~~~~l~~~d--~~~g~~~~~~~l~~~~~~~~~~ndiavd~dG~lyvtd~~~~~I~~v~~~g~~~-~~~~~~~~~~ 193 (332)
.. ..+.+++ ...++........ ....+|+++++++|++|++++..+.|+++++++... .+...+....
T Consensus 87 ~~-----~~~~~~~~~~~~~~~~~~~~~~----~~~~~n~i~~~~~g~~~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~~ 157 (302)
T d2p4oa1 87 NA-----DSIPVVSLVKSDGTVETLLTLP----DAIFLNGITPLSDTQYLTADSYRGAIWLIDVVQPSGSIWLEHPMLAR 157 (302)
T ss_dssp CT-----TSCEEEEEECTTSCEEEEEECT----TCSCEEEEEESSSSEEEEEETTTTEEEEEETTTTEEEEEEECGGGSC
T ss_pred CC-----ceEEEEEecccccceeeccccC----CccccceeEEccCCCEEeeccccccceeeeccCCcceeEecCCccce
Confidence 42 2344444 3344554444442 246899999999999999999999999999886533 3332222211
Q ss_pred cccccCccccCeEEEccCceEEEEeCCCCeEEEEeCCCCCCccceeEEEEecCCCCCCCCeEEEeCCCeEEEEeCCc-eE
Q 020019 194 KEWYKNLVGLNGIVYHPDGFLIVIHTFSGNLFKIDIVDGVGEGEEIKLIRVAGGPLSFGDGLELLSPTKLVVAGNPS-AR 272 (332)
Q Consensus 194 p~~~~~~~~~nGi~~~~dG~Lyva~~~~~~i~~id~~~~~~~~~~~~~v~~~g~~~~~pdGi~~~~dG~l~va~~~~-~~ 272 (332)
.........+|||.++ ++.||++++.+++|++++........ ..... . ....||||++|++|+||++.... ..
T Consensus 158 ~~~~~~~~~~ngi~~~-~~~l~~~~~~~~~i~~~~~~~~~~~~-~~~~~-~---~~~~pdgia~d~dG~l~va~~~~~~V 231 (302)
T d2p4oa1 158 SNSESVFPAANGLKRF-GNFLYVSNTEKMLLLRIPVDSTDKPG-EPEIF-V---EQTNIDDFAFDVEGNLYGATHIYNSV 231 (302)
T ss_dssp SSTTCCSCSEEEEEEE-TTEEEEEETTTTEEEEEEBCTTSCBC-CCEEE-E---ESCCCSSEEEBTTCCEEEECBTTCCE
T ss_pred eeccCccccccccccc-CCceeeecCCCCeEEecccccccccc-ccccc-c---CCCCCcceEECCCCCEEEEEcCCCcE
Confidence 1112345678999886 34899999999999999988542211 11111 1 23579999999999999997433 23
Q ss_pred EEEcCCCceEEEEEeeecCCCcccceEEEEE-----CCeEEEEEecCccccCCccceeeee
Q 020019 273 LVESSDGWETAAVVAKFSGPVHRLATAATVK-----DGRVYLNHMLGFGYPKKKHALVEAV 328 (332)
Q Consensus 273 ~v~~~dg~~~~~~~~~~~~~~~~~pt~va~~-----~g~lyv~~~~g~~~~~~~~~~~~~~ 328 (332)
.++.++| +...+.. .. ..+..|++++|. +++|||++..+...+.......+.+
T Consensus 232 ~~i~p~G-~~~~~~~-~~-~~~~~pt~vafg~~~~D~~~Lyvtt~~g~~~~~~~~~~~~~~ 289 (302)
T d2p4oa1 232 VRIAPDR-STTIIAQ-AE-QGVIGSTAVAFGQTEGDCTAIYVVTNGGMFLPPPTGVVPANV 289 (302)
T ss_dssp EEECTTC-CEEEEEC-GG-GTCTTEEEEEECCSTTTTTEEEEEECTTSSSCCTTCCCCEEE
T ss_pred EEECCCC-CEEEEEe-cC-CCCCCceEEEEcCCCCCCCEEEEECCCCccCCCcCCcCCCeE
Confidence 3567788 4433333 22 237789999992 3589998877776664443333333
|
| >d1rwia_ b.68.9.1 (A:) Serine/threonine-protein kinase PknD {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: NHL repeat family: NHL repeat domain: Serine/threonine-protein kinase PknD species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=99.91 E-value=1.4e-23 Score=185.08 Aligned_cols=229 Identities=16% Similarity=0.192 Sum_probs=161.8
Q ss_pred ccccceEEcCCCCEEEEE-ecCCeEEEEECCCCCCCccceeeeEEecccCcCCCccceEEEeCCCCeEEEEEeCcCCCcc
Q 020019 45 FFRECAKWDDSGRRFIVS-FLDGGIGQVAVPDDYPPGTVLEEVTLVKDLELTGNGSLGLVLDHPRNRLLVVAADVFGNKY 123 (332)
Q Consensus 45 ~~pegia~d~~g~~~~~~-~~~g~I~~vd~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~vd~~~g~l~v~~~~~~~~~~ 123 (332)
..|+++++|++|++|+++ ...++|.+++..+... ......+. ..|.||+++++ |++|+++.. .
T Consensus 14 ~~P~~vavd~dG~i~v~~~~~~~~i~~~~~~~~~~--------~~~~~~~~--~~p~gvav~~~-g~i~v~d~~-----~ 77 (260)
T d1rwia_ 14 LSPSGVAVDSAGNVYVTSEGMYGRVVKLATGSTGT--------TVLPFNGL--YQPQGLAVDGA-GTVYVTDFN-----N 77 (260)
T ss_dssp CCEEEEEECTTCCEEEEECSSSCEEEEEC----CE--------EECCCCSC--CSCCCEEECTT-CCEEEEETT-----T
T ss_pred CCCCEEEEcCCCCEEEEEcCCCCEEEEEcCCCceE--------EEeccCCc--cCceEEEEcCC-CCEEEeeee-----e
Confidence 589999999999999988 5568999998764431 23222222 37999999996 999999863 2
Q ss_pred ceEEEEECCCCcEEEEEecCCCCCCCCCccceEECCCCcEEEEeCCCCeEEEEcCCCceEEEecCCCCCCcccccCcccc
Q 020019 124 SAVAAYDLSTWNRLFLTQLSGPSDGKSCADDVTVDAEGNAYVTDVTGSKIWKVGVKGEFLSIISSPLFTPKEWYKNLVGL 203 (332)
Q Consensus 124 ~~l~~~d~~~g~~~~~~~l~~~~~~~~~~ndiavd~dG~lyvtd~~~~~I~~v~~~g~~~~~~~~~~~~~p~~~~~~~~~ 203 (332)
..+..++..++.. .... .+...|+++++|++|++|++|+.++++++++.+++........ .+..|
T Consensus 78 ~~i~~~~~~~~~~--~~~~----~~~~~p~~iavd~~g~i~v~d~~~~~~~~~~~~~~~~~~~~~~---------~~~~p 142 (260)
T d1rwia_ 78 RVVTLAAGSNNQT--VLPF----DGLNYPEGLAVDTQGAVYVADRGNNRVVKLAAGSKTQTVLPFT---------GLNDP 142 (260)
T ss_dssp EEEEECTTCSCCE--ECCC----CSCCSEEEEEECTTCCEEEEEGGGTEEEEECTTCSSCEECCCC---------SCCSC
T ss_pred ceeeeeeecccee--eeee----eeeeecccccccccceeEeeccccccccccccccceeeeeeec---------ccCCc
Confidence 3343343333222 2222 2246899999999999999999999999999988755443222 23567
Q ss_pred CeEEEccCceEEEEeCCCCeEEEEeCCCCCCccceeEEEEecCCCCCCCCeEEEeCCCeEEEEeCCceE-EEEcCCCceE
Q 020019 204 NGIVYHPDGFLIVIHTFSGNLFKIDIVDGVGEGEEIKLIRVAGGPLSFGDGLELLSPTKLVVAGNPSAR-LVESSDGWET 282 (332)
Q Consensus 204 nGi~~~~dG~Lyva~~~~~~i~~id~~~~~~~~~~~~~v~~~g~~~~~pdGi~~~~dG~l~va~~~~~~-~v~~~dg~~~ 282 (332)
+||+++++|++|+++..+++|++++.++. ....+.. ..+..|.||++|++|+|||++....+ ..+.+++ ..
T Consensus 143 ~~i~~~~~g~~~v~~~~~~~i~~~d~~~~-----~~~~~~~--~~~~~p~gi~~d~~g~l~vsd~~~~~i~~~~~~~-~~ 214 (260)
T d1rwia_ 143 DGVAVDNSGNVYVTDTDNNRVVKLEAESN-----NQVVLPF--TDITAPWGIAVDEAGTVYVTEHNTNQVVKLLAGS-TT 214 (260)
T ss_dssp CEEEECTTCCEEEEEGGGTEEEEECTTTC-----CEEECCC--SSCCSEEEEEECTTCCEEEEETTTTEEEEECTTC-SC
T ss_pred ceeeecCCCCEeeeccccccccccccccc-----eeeeeec--cccCCCccceeeeeeeeeeeecCCCEEEEEeCCC-Ce
Confidence 89999999999999999999999998854 2322222 35678999999999999999865433 3355665 22
Q ss_pred EEEEeeecCCCcccceEEEE-ECCeEEEEEecCc
Q 020019 283 AAVVAKFSGPVHRLATAATV-KDGRVYLNHMLGF 315 (332)
Q Consensus 283 ~~~~~~~~~~~~~~pt~va~-~~g~lyv~~~~g~ 315 (332)
.++. ....+..|+++++ .+|.|||+++-..
T Consensus 215 ~~~~---~~~~~~~P~~i~~d~~g~l~vad~~~~ 245 (260)
T d1rwia_ 215 STVL---PFTGLNTPLAVAVDSDRTVYVADRGND 245 (260)
T ss_dssp CEEC---CCCSCCCEEEEEECTTCCEEEEEGGGT
T ss_pred EEEE---ccCCCCCeEEEEEeCCCCEEEEECCCC
Confidence 2232 2234788999999 6789999877554
|
| >d1q7fa_ b.68.9.1 (A:) Brain tumor cg10719-pa {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: NHL repeat family: NHL repeat domain: Brain tumor cg10719-pa species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]
Probab=99.89 E-value=1.6e-20 Score=166.98 Aligned_cols=234 Identities=13% Similarity=0.055 Sum_probs=168.8
Q ss_pred cccceEEcCCCCEEEEEecCCeEEEEECCCCCCCccceeeeEEecc--cCcCCCccceEEEeCCCCeEEEEEeCcCCCcc
Q 020019 46 FRECAKWDDSGRRFIVSFLDGGIGQVAVPDDYPPGTVLEEVTLVKD--LELTGNGSLGLVLDHPRNRLLVVAADVFGNKY 123 (332)
Q Consensus 46 ~pegia~d~~g~~~~~~~~~g~I~~vd~~~~~~~~~~~~~~~~~~~--~~~~~~~~~gi~vd~~~g~l~v~~~~~~~~~~ 123 (332)
+|.+++++++|++|+++..+.+|.+++++ +++ .. .+... +......|.+++++.+.+..+++... ..
T Consensus 24 ~P~gvavd~dg~i~VaD~~n~rI~v~d~~-G~~----~~--~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~----~~ 92 (279)
T d1q7fa_ 24 EPSGVAVNAQNDIIVADTNNHRIQIFDKE-GRF----KF--QFGECGKRDSQLLYPNRVAVVRNSGDIIVTERS----PT 92 (279)
T ss_dssp CEEEEEECTTCCEEEEEGGGTEEEEECTT-SCE----EE--EECCBSSSTTCBSSEEEEEEETTTTEEEEEECG----GG
T ss_pred CccEEEEcCCCCEEEEECCCCEEEEEeCC-CCE----EE--EecccCCCcccccccccccccccccccceeccC----Cc
Confidence 89999999999999999888999999986 542 11 23211 11111368899987765776666543 23
Q ss_pred ceEEEEECCCCcEEEEEecCCCCCCCCCccceEECCCCcEEEEeCCCCeEEEEcCCCceEEEecCCCCCCcccccCcccc
Q 020019 124 SAVAAYDLSTWNRLFLTQLSGPSDGKSCADDVTVDAEGNAYVTDVTGSKIWKVGVKGEFLSIISSPLFTPKEWYKNLVGL 203 (332)
Q Consensus 124 ~~l~~~d~~~g~~~~~~~l~~~~~~~~~~ndiavd~dG~lyvtd~~~~~I~~v~~~g~~~~~~~~~~~~~p~~~~~~~~~ 203 (332)
..+..++. .|+....+.. .....|.++++|++|++|+++...+++++++++|+......... .+..+
T Consensus 93 ~~i~~~~~-~g~~~~~~~~----~~~~~p~~~avd~~G~i~v~~~~~~~~~~~~~~g~~~~~~g~~~--------~~~~~ 159 (279)
T d1q7fa_ 93 HQIQIYNQ-YGQFVRKFGA----TILQHPRGVTVDNKGRIIVVECKVMRVIIFDQNGNVLHKFGCSK--------HLEFP 159 (279)
T ss_dssp CEEEEECT-TSCEEEEECT----TTCSCEEEEEECTTSCEEEEETTTTEEEEECTTSCEEEEEECTT--------TCSSE
T ss_pred cccccccc-cccceeecCC----CcccccceeccccCCcEEEEeeccceeeEeccCCceeecccccc--------ccccc
Confidence 46777776 4666544433 22467999999999999999999999999999998765443211 24568
Q ss_pred CeEEEccCceEEEEeCCCCeEEEEeCCCCCCccceeEEEEecCCCCCCCCeEEEeCCCeEEEEeCC--ceEEEEcCCCce
Q 020019 204 NGIVYHPDGFLIVIHTFSGNLFKIDIVDGVGEGEEIKLIRVAGGPLSFGDGLELLSPTKLVVAGNP--SARLVESSDGWE 281 (332)
Q Consensus 204 nGi~~~~dG~Lyva~~~~~~i~~id~~~~~~~~~~~~~v~~~g~~~~~pdGi~~~~dG~l~va~~~--~~~~v~~~dg~~ 281 (332)
.+|+++++|++|+++...++|++++.+.. .+..+..+| .+..|.||++|++|+|||++.. ....++.++|.-
T Consensus 160 ~~i~~d~~g~i~v~d~~~~~V~~~d~~G~-----~~~~~g~~g-~~~~P~giavD~~G~i~Vad~~~~~~v~~f~~~G~~ 233 (279)
T d1q7fa_ 160 NGVVVNDKQEIFISDNRAHCVKVFNYEGQ-----YLRQIGGEG-ITNYPIGVGINSNGEILIADNHNNFNLTIFTQDGQL 233 (279)
T ss_dssp EEEEECSSSEEEEEEGGGTEEEEEETTCC-----EEEEESCTT-TSCSEEEEEECTTCCEEEEECSSSCEEEEECTTSCE
T ss_pred ceeeeccceeEEeeeccccceeeeecCCc-----eeeeecccc-cccCCcccccccCCeEEEEECCCCcEEEEECCCCCE
Confidence 89999999999999999999999998743 555554442 5678999999999999999742 234467788822
Q ss_pred EEEEEeeecCCCcccceEEEE-ECCeEEEEEe
Q 020019 282 TAAVVAKFSGPVHRLATAATV-KDGRVYLNHM 312 (332)
Q Consensus 282 ~~~~~~~~~~~~~~~pt~va~-~~g~lyv~~~ 312 (332)
..++... .....|+.+++ .+|+|||+++
T Consensus 234 ~~~~~~~---~~~~~p~~vav~~dG~l~V~~~ 262 (279)
T d1q7fa_ 234 ISALESK---VKHAQCFDVALMDDGSVVLASK 262 (279)
T ss_dssp EEEEEES---SCCSCEEEEEEETTTEEEEEET
T ss_pred EEEEeCC---CCCCCEeEEEEeCCCcEEEEeC
Confidence 2222221 23457999999 7889999764
|
| >d1rwia_ b.68.9.1 (A:) Serine/threonine-protein kinase PknD {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: NHL repeat family: NHL repeat domain: Serine/threonine-protein kinase PknD species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=99.85 E-value=3.6e-20 Score=162.98 Aligned_cols=191 Identities=18% Similarity=0.227 Sum_probs=138.8
Q ss_pred ccccceEEcCCCCEEEEEecCCeEEEEECCCCCCCccceeeeEEecccCcCCCccceEEEeCCCCeEEEEEeCcCCCccc
Q 020019 45 FFRECAKWDDSGRRFIVSFLDGGIGQVAVPDDYPPGTVLEEVTLVKDLELTGNGSLGLVLDHPRNRLLVVAADVFGNKYS 124 (332)
Q Consensus 45 ~~pegia~d~~g~~~~~~~~~g~I~~vd~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~vd~~~g~l~v~~~~~~~~~~~ 124 (332)
..|++++++++|++|+++...+.| ++...+... ........ ..|.+|+++++ |++|+++.. ..
T Consensus 57 ~~p~gvav~~~g~i~v~d~~~~~i-~~~~~~~~~--------~~~~~~~~--~~p~~iavd~~-g~i~v~d~~-----~~ 119 (260)
T d1rwia_ 57 YQPQGLAVDGAGTVYVTDFNNRVV-TLAAGSNNQ--------TVLPFDGL--NYPEGLAVDTQ-GAVYVADRG-----NN 119 (260)
T ss_dssp CSCCCEEECTTCCEEEEETTTEEE-EECTTCSCC--------EECCCCSC--CSEEEEEECTT-CCEEEEEGG-----GT
T ss_pred cCceEEEEcCCCCEEEeeeeecee-eeeeeccce--------eeeeeeee--eeccccccccc-ceeEeeccc-----cc
Confidence 489999999999998887654444 454433321 22211111 47899999996 899999863 45
Q ss_pred eEEEEECCCCcEEEEEecCCCCCCCCCccceEECCCCcEEEEeCCCCeEEEEcCCCceEEEecCCCCCCcccccCccccC
Q 020019 125 AVAAYDLSTWNRLFLTQLSGPSDGKSCADDVTVDAEGNAYVTDVTGSKIWKVGVKGEFLSIISSPLFTPKEWYKNLVGLN 204 (332)
Q Consensus 125 ~l~~~d~~~g~~~~~~~l~~~~~~~~~~ndiavd~dG~lyvtd~~~~~I~~v~~~g~~~~~~~~~~~~~p~~~~~~~~~n 204 (332)
++..++....... .... .+...|++++++++|++|++++..++|++++.++......... .+..|+
T Consensus 120 ~~~~~~~~~~~~~-~~~~----~~~~~p~~i~~~~~g~~~v~~~~~~~i~~~d~~~~~~~~~~~~---------~~~~p~ 185 (260)
T d1rwia_ 120 RVVKLAAGSKTQT-VLPF----TGLNDPDGVAVDNSGNVYVTDTDNNRVVKLEAESNNQVVLPFT---------DITAPW 185 (260)
T ss_dssp EEEEECTTCSSCE-ECCC----CSCCSCCEEEECTTCCEEEEEGGGTEEEEECTTTCCEEECCCS---------SCCSEE
T ss_pred cccccccccceee-eeee----cccCCcceeeecCCCCEeeeccccccccccccccceeeeeecc---------ccCCCc
Confidence 6778877654332 2222 2246789999999999999999999999999998765543322 235688
Q ss_pred eEEEccCceEEEEeCCCCeEEEEeCCCCCCccceeEEEEecCCCCCCCCeEEEeCCCeEEEEeCCceEE
Q 020019 205 GIVYHPDGFLIVIHTFSGNLFKIDIVDGVGEGEEIKLIRVAGGPLSFGDGLELLSPTKLVVAGNPSARL 273 (332)
Q Consensus 205 Gi~~~~dG~Lyva~~~~~~i~~id~~~~~~~~~~~~~v~~~g~~~~~pdGi~~~~dG~l~va~~~~~~~ 273 (332)
||+++++|.|||++..+++|+++++++. ....+.. ..+..|.||+++++|+|||++..+.++
T Consensus 186 gi~~d~~g~l~vsd~~~~~i~~~~~~~~-----~~~~~~~--~~~~~P~~i~~d~~g~l~vad~~~~rI 247 (260)
T d1rwia_ 186 GIAVDEAGTVYVTEHNTNQVVKLLAGST-----TSTVLPF--TGLNTPLAVAVDSDRTVYVADRGNDRV 247 (260)
T ss_dssp EEEECTTCCEEEEETTTTEEEEECTTCS-----CCEECCC--CSCCCEEEEEECTTCCEEEEEGGGTEE
T ss_pred cceeeeeeeeeeeecCCCEEEEEeCCCC-----eEEEEcc--CCCCCeEEEEEeCCCCEEEEECCCCEE
Confidence 9999999999999999999999998754 2332222 356789999999999999998554443
|
| >d1pjxa_ b.68.6.1 (A:) Diisopropylfluorophosphatase (phosphotriesterase, DFP) {Squid (Loligo vulgaris) [TaxId: 6622]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: SGL-like domain: Diisopropylfluorophosphatase (phosphotriesterase, DFP) species: Squid (Loligo vulgaris) [TaxId: 6622]
Probab=99.79 E-value=5e-18 Score=153.48 Aligned_cols=194 Identities=14% Similarity=0.187 Sum_probs=136.6
Q ss_pred cccceEEcCCCCEEEEEecCCeEEEEECCCCCCCccceeeeEEecccCcCC---CccceEEEeCCCCeEEEEEeCcCC--
Q 020019 46 FRECAKWDDSGRRFIVSFLDGGIGQVAVPDDYPPGTVLEEVTLVKDLELTG---NGSLGLVLDHPRNRLLVVAADVFG-- 120 (332)
Q Consensus 46 ~pegia~d~~g~~~~~~~~~g~I~~vd~~~~~~~~~~~~~~~~~~~~~~~~---~~~~gi~vd~~~g~l~v~~~~~~~-- 120 (332)
.|.|++++++|+++|+.-..+.|.+++++++.. .+.. ....+ +.|+.+++|++ |++|+++.....
T Consensus 72 ~P~Gl~~~~dg~~l~vad~~~~i~~~~~~g~~~--------~~~~-~~~~g~~~~~pndl~~d~~-G~lyvtd~~~~~~~ 141 (314)
T d1pjxa_ 72 IPAGCQCDRDANQLFVADMRLGLLVVQTDGTFE--------EIAK-KDSEGRRMQGCNDCAFDYE-GNLWITAPAGEVAP 141 (314)
T ss_dssp CEEEEEECSSSSEEEEEETTTEEEEEETTSCEE--------ECCS-BCTTSCBCBCCCEEEECTT-SCEEEEECBCBCTT
T ss_pred cceeEEEeCCCCEEEEEECCCeEEEEeCCCcEE--------EEEe-ccccccccCCCcEEEECCC-CCEEEecCccCccc
Confidence 689999999998666664457899999875531 2221 11111 36899999997 999999854210
Q ss_pred --------CccceEEEEECCCCcEEEEEecCCCCCCCCCccceEECCCC-----cEEEEeCCCCeEEEEcC--CCceEE-
Q 020019 121 --------NKYSAVAAYDLSTWNRLFLTQLSGPSDGKSCADDVTVDAEG-----NAYVTDVTGSKIWKVGV--KGEFLS- 184 (332)
Q Consensus 121 --------~~~~~l~~~d~~~g~~~~~~~l~~~~~~~~~~ndiavd~dG-----~lyvtd~~~~~I~~v~~--~g~~~~- 184 (332)
...+++++++++ |+...... +..+||++++++++ .+|++|+.+++|++++. +|....
T Consensus 142 ~~~~~~~~~~~G~v~~~~~d-g~~~~~~~------~~~~pNGi~~~~d~d~~~~~lyv~d~~~~~i~~~d~~~~g~~~~~ 214 (314)
T d1pjxa_ 142 ADYTRSMQEKFGSIYCFTTD-GQMIQVDT------AFQFPNGIAVRHMNDGRPYQLIVAETPTKKLWSYDIKGPAKIENK 214 (314)
T ss_dssp SCCCBTTSSSCEEEEEECTT-SCEEEEEE------EESSEEEEEEEECTTSCEEEEEEEETTTTEEEEEEEEETTEEEEE
T ss_pred ccccceeccCCceEEEEeec-CceeEeeC------CcceeeeeEECCCCCcceeEEEEEeecccceEEeeccCcccccee
Confidence 234578888875 45433221 13678999998875 39999999999999874 444321
Q ss_pred --EecCCCCCCcccccCccccCeEEEccCceEEEEeCCCCeEEEEeCCCCCCccceeEEEEecCCCCCCCCeEEEeCCC-
Q 020019 185 --IISSPLFTPKEWYKNLVGLNGIVYHPDGFLIVIHTFSGNLFKIDIVDGVGEGEEIKLIRVAGGPLSFGDGLELLSPT- 261 (332)
Q Consensus 185 --~~~~~~~~~p~~~~~~~~~nGi~~~~dG~Lyva~~~~~~i~~id~~~~~~~~~~~~~v~~~g~~~~~pdGi~~~~dG- 261 (332)
+...+.. ....|+||+++++|+|||++...++|++|+++++. ....+..+ ...|.++++.+|+
T Consensus 215 ~~~~~~~~~-------~~~~pdGiavD~~GnlyVa~~~~g~I~~~dp~~g~----~~~~i~~p---~~~~t~~afg~d~~ 280 (314)
T d1pjxa_ 215 KVWGHIPGT-------HEGGADGMDFDEDNNLLVANWGSSHIEVFGPDGGQ----PKMRIRCP---FEKPSNLHFKPQTK 280 (314)
T ss_dssp EEEEECCCC-------SSCEEEEEEEBTTCCEEEEEETTTEEEEECTTCBS----CSEEEECS---SSCEEEEEECTTSS
T ss_pred eEEEEcccc-------ccccceeeEEecCCcEEEEEcCCCEEEEEeCCCCE----EEEEEECC---CCCEEEEEEeCCCC
Confidence 1111111 23468999999999999999999999999998762 34556554 3578899999987
Q ss_pred eEEEEeCCc
Q 020019 262 KLVVAGNPS 270 (332)
Q Consensus 262 ~l~va~~~~ 270 (332)
+|||++...
T Consensus 281 ~lyVt~~~~ 289 (314)
T d1pjxa_ 281 TIFVTEHEN 289 (314)
T ss_dssp EEEEEETTT
T ss_pred EEEEEECCC
Confidence 599997543
|
| >d1q7fa_ b.68.9.1 (A:) Brain tumor cg10719-pa {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: NHL repeat family: NHL repeat domain: Brain tumor cg10719-pa species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]
Probab=99.75 E-value=3.3e-16 Score=138.61 Aligned_cols=191 Identities=14% Similarity=0.125 Sum_probs=137.6
Q ss_pred ccccceEEcCCCCEE-EEE-ecCCeEEEEECCCCCCCccceeeeEEecccCcCCCccceEEEeCCCCeEEEEEeCcCCCc
Q 020019 45 FFRECAKWDDSGRRF-IVS-FLDGGIGQVAVPDDYPPGTVLEEVTLVKDLELTGNGSLGLVLDHPRNRLLVVAADVFGNK 122 (332)
Q Consensus 45 ~~pegia~d~~g~~~-~~~-~~~g~I~~vd~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~vd~~~g~l~v~~~~~~~~~ 122 (332)
..|.+++++.+...+ ++. ..+++|.+++.. ++. .. .+ ..... ..|.+++++++ |++|+++..
T Consensus 70 ~~p~~~~~~~~~~~~~~~~~~~~~~i~~~~~~-g~~----~~--~~-~~~~~--~~p~~~avd~~-G~i~v~~~~----- 133 (279)
T d1q7fa_ 70 LYPNRVAVVRNSGDIIVTERSPTHQIQIYNQY-GQF----VR--KF-GATIL--QHPRGVTVDNK-GRIIVVECK----- 133 (279)
T ss_dssp SSEEEEEEETTTTEEEEEECGGGCEEEEECTT-SCE----EE--EE-CTTTC--SCEEEEEECTT-SCEEEEETT-----
T ss_pred cccccccccccccccceeccCCcccccccccc-ccc----ee--ec-CCCcc--cccceeccccC-CcEEEEeec-----
Confidence 368888877765444 444 456789898875 431 11 22 11222 37899999996 999999864
Q ss_pred cceEEEEECCCCcEEEEEecCCCCCCCCCccceEECCCCcEEEEeCCCCeEEEEcCCCceEEEecCCCCCCcccccCccc
Q 020019 123 YSAVAAYDLSTWNRLFLTQLSGPSDGKSCADDVTVDAEGNAYVTDVTGSKIWKVGVKGEFLSIISSPLFTPKEWYKNLVG 202 (332)
Q Consensus 123 ~~~l~~~d~~~g~~~~~~~l~~~~~~~~~~ndiavd~dG~lyvtd~~~~~I~~v~~~g~~~~~~~~~~~~~p~~~~~~~~ 202 (332)
..++.+|+.+ ++....+... .....++++++|++|++|+++...+.|++++++|+....+..+. .+..
T Consensus 134 ~~~~~~~~~~-g~~~~~~g~~---~~~~~~~~i~~d~~g~i~v~d~~~~~V~~~d~~G~~~~~~g~~g--------~~~~ 201 (279)
T d1q7fa_ 134 VMRVIIFDQN-GNVLHKFGCS---KHLEFPNGVVVNDKQEIFISDNRAHCVKVFNYEGQYLRQIGGEG--------ITNY 201 (279)
T ss_dssp TTEEEEECTT-SCEEEEEECT---TTCSSEEEEEECSSSEEEEEEGGGTEEEEEETTCCEEEEESCTT--------TSCS
T ss_pred cceeeEeccC-Cceeeccccc---ccccccceeeeccceeEEeeeccccceeeeecCCceeeeecccc--------cccC
Confidence 4578889875 5665544432 23578999999999999999999999999999998665443211 2346
Q ss_pred cCeEEEccCceEEEEeCCC-CeEEEEeCCCCCCccceeEEEEecCCCCCCCCeEEEeCCCeEEEEeCC
Q 020019 203 LNGIVYHPDGFLIVIHTFS-GNLFKIDIVDGVGEGEEIKLIRVAGGPLSFGDGLELLSPTKLVVAGNP 269 (332)
Q Consensus 203 ~nGi~~~~dG~Lyva~~~~-~~i~~id~~~~~~~~~~~~~v~~~g~~~~~pdGi~~~~dG~l~va~~~ 269 (332)
|.||+++++|+|||++..+ .+|.+++++ + +.+..+... .....|.+|++++||+|||++.+
T Consensus 202 P~giavD~~G~i~Vad~~~~~~v~~f~~~-G----~~~~~~~~~-~~~~~p~~vav~~dG~l~V~~~n 263 (279)
T d1q7fa_ 202 PIGVGINSNGEILIADNHNNFNLTIFTQD-G----QLISALESK-VKHAQCFDVALMDDGSVVLASKD 263 (279)
T ss_dssp EEEEEECTTCCEEEEECSSSCEEEEECTT-S----CEEEEEEES-SCCSCEEEEEEETTTEEEEEETT
T ss_pred CcccccccCCeEEEEECCCCcEEEEECCC-C----CEEEEEeCC-CCCCCEeEEEEeCCCcEEEEeCC
Confidence 8899999999999999754 468888866 4 255656544 24467999999999999999844
|
| >d2dg1a1 b.68.6.1 (A:6-324) Lactonase Drp35 {Staphylococcus aureus [TaxId: 1280]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: SGL-like domain: Lactonase Drp35 species: Staphylococcus aureus [TaxId: 1280]
Probab=99.74 E-value=2.7e-16 Score=142.17 Aligned_cols=201 Identities=15% Similarity=0.208 Sum_probs=138.7
Q ss_pred CccccceEEcCCCCEEEEEe----cCCeEEEEECCCCCCCccceeeeEEecccCcCCCccceEEEeCCCCeEEEEEeCcC
Q 020019 44 SFFRECAKWDDSGRRFIVSF----LDGGIGQVAVPDDYPPGTVLEEVTLVKDLELTGNGSLGLVLDHPRNRLLVVAADVF 119 (332)
Q Consensus 44 ~~~pegia~d~~g~~~~~~~----~~g~I~~vd~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~vd~~~g~l~v~~~~~~ 119 (332)
...|.+++++++|++|+++. ..+.|++++..++.. . ..... ......+++++++++ |++|+++....
T Consensus 81 ~~~p~gla~~~dG~l~va~~~~~~~~~~i~~~~~~~~~~-----~--~~~~~-~~~~~~~nd~~~d~~-G~l~vtd~~~~ 151 (319)
T d2dg1a1 81 KANPAAIKIHKDGRLFVCYLGDFKSTGGIFAATENGDNL-----Q--DIIED-LSTAYCIDDMVFDSK-GGFYFTDFRGY 151 (319)
T ss_dssp SSSEEEEEECTTSCEEEEECTTSSSCCEEEEECTTSCSC-----E--EEECS-SSSCCCEEEEEECTT-SCEEEEECCCB
T ss_pred CCCeeEEEECCCCCEEEEecCCCccceeEEEEcCCCcee-----e--eeccC-CCcccCCcceeEEec-cceeecccccc
Confidence 34789999999999999873 246799998876552 2 23322 112347899999996 99999986532
Q ss_pred C-CccceEEEEECCCCcEEEEEecCCCCCCCCCccceEECCCCc-EEEEeCCCCeEEEEcCC--CceEEEecCCCCCCcc
Q 020019 120 G-NKYSAVAAYDLSTWNRLFLTQLSGPSDGKSCADDVTVDAEGN-AYVTDVTGSKIWKVGVK--GEFLSIISSPLFTPKE 195 (332)
Q Consensus 120 ~-~~~~~l~~~d~~~g~~~~~~~l~~~~~~~~~~ndiavd~dG~-lyvtd~~~~~I~~v~~~--g~~~~~~~~~~~~~p~ 195 (332)
. ...+.+++++++.+....... +...||++++++||+ +|++|+..++|++++.+ |.......... +.
T Consensus 152 ~~~~~g~v~~~~~dg~~~~~~~~------~~~~pnGia~s~dg~~lyvad~~~~~I~~~d~~~~g~~~~~~~~~~---~~ 222 (319)
T d2dg1a1 152 STNPLGGVYYVSPDFRTVTPIIQ------NISVANGIALSTDEKVLWVTETTANRLHRIALEDDGVTIQPFGATI---PY 222 (319)
T ss_dssp TTBCCEEEEEECTTSCCEEEEEE------EESSEEEEEECTTSSEEEEEEGGGTEEEEEEECTTSSSEEEEEEEE---EE
T ss_pred cccCcceeEEEecccceeEEEee------ccceeeeeeeccccceEEEecccCCceEEEEEcCCCceecccccee---ee
Confidence 2 235678889887655443221 136799999999986 99999999999998743 43322111000 00
Q ss_pred cccCccccCeEEEccCceEEEEeCCCCeEEEEeCCCCCCccceeEEEEecCC---CCCCCCeEEEeCCC-eEEEEe
Q 020019 196 WYKNLVGLNGIVYHPDGFLIVIHTFSGNLFKIDIVDGVGEGEEIKLIRVAGG---PLSFGDGLELLSPT-KLVVAG 267 (332)
Q Consensus 196 ~~~~~~~~nGi~~~~dG~Lyva~~~~~~i~~id~~~~~~~~~~~~~v~~~g~---~~~~pdGi~~~~dG-~l~va~ 267 (332)
......+|+||++|++|+|||++..+++|++|+++.. .+.++.+++. ....+..+++.+++ .+|++.
T Consensus 223 ~~~~~~~PdGl~vD~~G~l~Va~~~~g~V~~~~p~G~-----~l~~i~~P~~~~~~~~~~~~~~~~~~~~~~~~t~ 293 (319)
T d2dg1a1 223 YFTGHEGPDSCCIDSDDNLYVAMYGQGRVLVFNKRGY-----PIGQILIPGRDEGHMLRSTHPQFIPGTNQLIICS 293 (319)
T ss_dssp ECCSSSEEEEEEEBTTCCEEEEEETTTEEEEECTTSC-----EEEEEECTTGGGTCSCBCCEEEECTTSCEEEEEE
T ss_pred ccCCccceeeeeEcCCCCEEEEEcCCCEEEEECCCCc-----EEEEEeCCCcCCCcCceeeeEEEeCCCCEEEEEc
Confidence 0112346899999999999999999999999998743 6777887632 12356788887764 465654
|
| >d1npea_ b.68.5.1 (A:) Nidogen {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: YWTD domain family: YWTD domain domain: Nidogen species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.72 E-value=3.7e-15 Score=131.04 Aligned_cols=216 Identities=15% Similarity=0.164 Sum_probs=147.9
Q ss_pred ccccceEEcCCCC-EEEEEecCCeEEEEECCCCCCCccceeeeEEecccCcCCCccceEEEeCCCCeEEEEEeCcCCCcc
Q 020019 45 FFRECAKWDDSGR-RFIVSFLDGGIGQVAVPDDYPPGTVLEEVTLVKDLELTGNGSLGLVLDHPRNRLLVVAADVFGNKY 123 (332)
Q Consensus 45 ~~pegia~d~~g~-~~~~~~~~g~I~~vd~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~vd~~~g~l~v~~~~~~~~~~ 123 (332)
..+.++++|...+ +|+++...++|++++.+++.. + ++.. .+. ..|.||++|.-+++||+++.. .
T Consensus 36 ~~~~~ld~D~~~~~iywsd~~~~~I~~~~l~g~~~-----~--~v~~-~~~--~~p~~iAvD~~~~~lY~~d~~-----~ 100 (263)
T d1npea_ 36 KVIIGLAFDCVDKVVYWTDISEPSIGRASLHGGEP-----T--TIIR-QDL--GSPEGIALDHLGRTIFWTDSQ-----L 100 (263)
T ss_dssp EEEEEEEEETTTTEEEEEETTTTEEEEEESSSCCC-----E--EEEC-TTC--CCEEEEEEETTTTEEEEEETT-----T
T ss_pred CcEEEEEEEeCCCEEEEEECCCCeEEEEEcccCCc-----E--EEEE-ecc--ccccEEEEeccCCeEEEeccC-----C
Confidence 3567899997765 555567789999999875542 2 3442 222 278999999767999999863 4
Q ss_pred ceEEEEECCCCcEEEEEecCCCCCCCCCccceEECCC-CcEEEEeCCC--CeEEEEcCCCceEEEecCCCCCCcccccCc
Q 020019 124 SAVAAYDLSTWNRLFLTQLSGPSDGKSCADDVTVDAE-GNAYVTDVTG--SKIWKVGVKGEFLSIISSPLFTPKEWYKNL 200 (332)
Q Consensus 124 ~~l~~~d~~~g~~~~~~~l~~~~~~~~~~ndiavd~d-G~lyvtd~~~--~~I~~v~~~g~~~~~~~~~~~~~p~~~~~~ 200 (332)
.+|.+++++......... .....|.++++||. |.+|+++++. ++|++.+.+|+....+... ..
T Consensus 101 ~~I~~~~~dg~~~~~l~~-----~~l~~p~~l~vdp~~g~ly~t~~~~~~~~I~r~~~dG~~~~~i~~~---------~~ 166 (263)
T d1npea_ 101 DRIEVAKMDGTQRRVLFD-----TGLVNPRGIVTDPVRGNLYWTDWNRDNPKIETSHMDGTNRRILAQD---------NL 166 (263)
T ss_dssp TEEEEEETTSCSCEEEEC-----SSCSSEEEEEEETTTTEEEEEECCSSSCEEEEEETTSCCCEEEECT---------TC
T ss_pred CEEEEEecCCceEEEEec-----ccccCCcEEEEecccCcEEEeecCCCCcEEEEecCCCCCceeeeee---------cc
Confidence 578888987544332221 12467999999996 6799999764 5799999998743333222 23
Q ss_pred cccCeEEEccCc-eEEEEeCCCCeEEEEeCCCCCCccceeEEEEecCCCCCCCCeEEEeCCCeEEEEeCCc--eEEEEcC
Q 020019 201 VGLNGIVYHPDG-FLIVIHTFSGNLFKIDIVDGVGEGEEIKLIRVAGGPLSFGDGLELLSPTKLVVAGNPS--ARLVESS 277 (332)
Q Consensus 201 ~~~nGi~~~~dG-~Lyva~~~~~~i~~id~~~~~~~~~~~~~v~~~g~~~~~pdGi~~~~dG~l~va~~~~--~~~v~~~ 277 (332)
..|+||++|+.+ .||+++...++|.++++++. ..+.+. . .+..|.||+++ +++||+++... +..+...
T Consensus 167 ~~P~glaiD~~~~~lYw~d~~~~~I~~~~~~g~-----~~~~v~-~--~~~~P~~lav~-~~~lYwtd~~~~~I~~~~~~ 237 (263)
T d1npea_ 167 GLPNGLTFDAFSSQLCWVDAGTHRAECLNPAQP-----GRRKVL-E--GLQYPFAVTSY-GKNLYYTDWKTNSVIAMDLA 237 (263)
T ss_dssp SCEEEEEEETTTTEEEEEETTTTEEEEEETTEE-----EEEEEE-E--CCCSEEEEEEE-TTEEEEEETTTTEEEEEETT
T ss_pred cccceEEEeecCcEEEEEeCCCCEEEEEECCCC-----CeEEEE-C--CCCCcEEEEEE-CCEEEEEECCCCEEEEEECC
Confidence 467899999887 99999999999999999854 343333 2 34678999998 58999998543 3334445
Q ss_pred CCceEEEEEeeecCCCcccceEEEE
Q 020019 278 DGWETAAVVAKFSGPVHRLATAATV 302 (332)
Q Consensus 278 dg~~~~~~~~~~~~~~~~~pt~va~ 302 (332)
.| +. ...+.......|.++++
T Consensus 238 ~g-~~---~~~~~~~~~~~~~gi~v 258 (263)
T d1npea_ 238 IS-KE---MDTFHPHKQTRLYGITI 258 (263)
T ss_dssp TT-EE---EEEECCSSCCCCCCEEE
T ss_pred CC-cc---ceEECCCCCCCcceEEE
Confidence 56 22 22221122445777776
|
| >d1ijqa1 b.68.5.1 (A:377-642) Low density lipoprotein (LDL) receptor {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: YWTD domain family: YWTD domain domain: Low density lipoprotein (LDL) receptor species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.68 E-value=5.3e-14 Score=123.69 Aligned_cols=222 Identities=16% Similarity=0.102 Sum_probs=146.6
Q ss_pred ccccceEEcCCCC-EEEEEecCCeEEEEECCCCCCCccceeeeEEecccCcCCCccceEEEeCCCCeEEEEEeCcCCCcc
Q 020019 45 FFRECAKWDDSGR-RFIVSFLDGGIGQVAVPDDYPPGTVLEEVTLVKDLELTGNGSLGLVLDHPRNRLLVVAADVFGNKY 123 (332)
Q Consensus 45 ~~pegia~d~~g~-~~~~~~~~g~I~~vd~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~vd~~~g~l~v~~~~~~~~~~ 123 (332)
..+.++++|...+ +|+++...+.|++.+.++.... ...+ ++. ..+. ..|.||++|.-+++||+++.. .
T Consensus 30 ~~~~~id~d~~~~~lYw~D~~~~~I~~~~l~~~~~~-~~~~--~~~-~~~~--~~p~glAvD~~~~~lY~~d~~-----~ 98 (266)
T d1ijqa1 30 RNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGV-SSYD--TVI-SRDI--QAPDGLAVDWIHSNIYWTDSV-----L 98 (266)
T ss_dssp SSEEEEEEETTTTEEEEEETTTTEEEEEEC---------CE--EEE-CSSC--SCCCEEEEETTTTEEEEEETT-----T
T ss_pred CceEEEEEEeCCCEEEEEECCCCEEEEEEecCCCCC-cceE--EEE-eCCC--CCcceEEEeeccceEEEEecC-----C
Confidence 3677899998765 5666677889999987643210 0011 233 2222 368999999877999999864 4
Q ss_pred ceEEEEECCCCcEEEEEecCCCCCCCCCccceEECCC-CcEEEEeCCC-CeEEEEcCCCceEEEecCCCCCCcccccCcc
Q 020019 124 SAVAAYDLSTWNRLFLTQLSGPSDGKSCADDVTVDAE-GNAYVTDVTG-SKIWKVGVKGEFLSIISSPLFTPKEWYKNLV 201 (332)
Q Consensus 124 ~~l~~~d~~~g~~~~~~~l~~~~~~~~~~ndiavd~d-G~lyvtd~~~-~~I~~v~~~g~~~~~~~~~~~~~p~~~~~~~ 201 (332)
.+|.+++++......... .....|.++++||. |.+|+++++. +.|++.+.+|.....+... ...
T Consensus 99 ~~I~v~~~~g~~~~~~~~-----~~~~~P~~l~vd~~~g~ly~~~~~~~~~I~r~~~dGs~~~~l~~~---------~~~ 164 (266)
T d1ijqa1 99 GTVSVADTKGVKRKTLFR-----ENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLVTE---------NIQ 164 (266)
T ss_dssp TEEEEEETTSSSEEEEEE-----CTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCCEEEEECS---------SCS
T ss_pred CEEEeEecCCceEEEEEc-----CCCCCcceEEEEcccCeEEEeccCCCcceeEeccCCCceeccccc---------ccc
Confidence 578999987554433222 12467999999995 7899999764 6899999998754433222 234
Q ss_pred ccCeEEEccCc-eEEEEeCCCCeEEEEeCCCCCCccceeEEEEecCCCCCCCCeEEEeCCCeEEEEeCCc--eEEEEcCC
Q 020019 202 GLNGIVYHPDG-FLIVIHTFSGNLFKIDIVDGVGEGEEIKLIRVAGGPLSFGDGLELLSPTKLVVAGNPS--ARLVESSD 278 (332)
Q Consensus 202 ~~nGi~~~~dG-~Lyva~~~~~~i~~id~~~~~~~~~~~~~v~~~g~~~~~pdGi~~~~dG~l~va~~~~--~~~v~~~d 278 (332)
.|+||++++.+ +||+++...++|.++++++. ..+.+......+..|.||+++ ++.||+++... +..+...+
T Consensus 165 ~p~gl~iD~~~~~lYw~d~~~~~I~~~~~dG~-----~~~~~~~~~~~~~~p~~lav~-~~~ly~td~~~~~I~~~~~~~ 238 (266)
T d1ijqa1 165 WPNGITLDLLSGRLYWVDSKLHSISSIDVNGG-----NRKTILEDEKRLAHPFSLAVF-EDKVFWTDIINEAIFSANRLT 238 (266)
T ss_dssp CEEEEEEETTTTEEEEEETTTTEEEEEETTSC-----SCEEEEECTTTTSSEEEEEEE-TTEEEEEETTTTEEEEEETTT
T ss_pred eeeEEEeeccccEEEEecCCcCEEEEEECCCC-----CEEEEEeCCCcccccEEEEEE-CCEEEEEECCCCeEEEEECCC
Confidence 57899999887 99999999999999999854 223332222346789999999 57999998543 33344455
Q ss_pred CceEEEEEeeecCCCcccceEEEE
Q 020019 279 GWETAAVVAKFSGPVHRLATAATV 302 (332)
Q Consensus 279 g~~~~~~~~~~~~~~~~~pt~va~ 302 (332)
|.....+.. .+..|.++.+
T Consensus 239 g~~~~~~~~-----~~~~p~~i~v 257 (266)
T d1ijqa1 239 GSDVNLLAE-----NLLSPEDMVL 257 (266)
T ss_dssp CCCCEEEEC-----SCSCCCCEEE
T ss_pred CcceEEEEc-----CCCCceEEEE
Confidence 522222222 2345666655
|
| >d2p4oa1 b.68.6.3 (A:4-305) Hypothetical protein All0351 homologue {Nostoc punctiforme [TaxId: 272131]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: All0351-like domain: Hypothetical protein All0351 homologue species: Nostoc punctiforme [TaxId: 272131]
Probab=99.65 E-value=1.6e-14 Score=128.94 Aligned_cols=200 Identities=10% Similarity=0.029 Sum_probs=137.6
Q ss_pred CccccceEEcCCCCEEEEEecCCeEEEEECCCCCCCccceeeeEEecccCcCCCccceEEEeCCCCeEEEEEeCcCCCcc
Q 020019 44 SFFRECAKWDDSGRRFIVSFLDGGIGQVAVPDDYPPGTVLEEVTLVKDLELTGNGSLGLVLDHPRNRLLVVAADVFGNKY 123 (332)
Q Consensus 44 ~~~pegia~d~~g~~~~~~~~~g~I~~vd~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~vd~~~g~l~v~~~~~~~~~~ 123 (332)
...|.+++++++|++|+++...+.+++++...... ....+...+. +..+++++++++ |++|+++.. .
T Consensus 67 ~~~~~gla~~~dG~l~v~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~--~~~~n~i~~~~~-g~~~v~~~~-----~ 133 (302)
T d2p4oa1 67 EGKVSGLAFTSNGDLVATGWNADSIPVVSLVKSDG-----TVETLLTLPD--AIFLNGITPLSD-TQYLTADSY-----R 133 (302)
T ss_dssp SSEEEEEEECTTSCEEEEEECTTSCEEEEEECTTS-----CEEEEEECTT--CSCEEEEEESSS-SEEEEEETT-----T
T ss_pred CCCcceEEEcCCCCeEEEecCCceEEEEEeccccc-----ceeeccccCC--ccccceeEEccC-CCEEeeccc-----c
Confidence 34789999999999999887778888877654331 1112332232 236899999996 999999863 4
Q ss_pred ceEEEEECCCCcEEEEEecC--CC---CCCCCCccceEECCCCcEEEEeCCCCeEEEEcCCCceEEEecCCCCCCccccc
Q 020019 124 SAVAAYDLSTWNRLFLTQLS--GP---SDGKSCADDVTVDAEGNAYVTDVTGSKIWKVGVKGEFLSIISSPLFTPKEWYK 198 (332)
Q Consensus 124 ~~l~~~d~~~g~~~~~~~l~--~~---~~~~~~~ndiavd~dG~lyvtd~~~~~I~~v~~~g~~~~~~~~~~~~~p~~~~ 198 (332)
..++++|++++.......-. .+ ......+|++..+. +.+|++++..+.|++++.++..... .... ..
T Consensus 134 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ngi~~~~-~~l~~~~~~~~~i~~~~~~~~~~~~-~~~~------~~ 205 (302)
T d2p4oa1 134 GAIWLIDVVQPSGSIWLEHPMLARSNSESVFPAANGLKRFG-NFLYVSNTEKMLLLRIPVDSTDKPG-EPEI------FV 205 (302)
T ss_dssp TEEEEEETTTTEEEEEEECGGGSCSSTTCCSCSEEEEEEET-TEEEEEETTTTEEEEEEBCTTSCBC-CCEE------EE
T ss_pred ccceeeeccCCcceeEecCCccceeeccCcccccccccccC-CceeeecCCCCeEEecccccccccc-cccc------cc
Confidence 67899999877654332211 01 11235788998875 4699999999999999977432110 0000 01
Q ss_pred CccccCeEEEccCceEEEEeCCCCeEEEEeCCCCCCccceeEEEEecCCCCCCCCeEEEe---CC-CeEEEEeCCc
Q 020019 199 NLVGLNGIVYHPDGFLIVIHTFSGNLFKIDIVDGVGEGEEIKLIRVAGGPLSFGDGLELL---SP-TKLVVAGNPS 270 (332)
Q Consensus 199 ~~~~~nGi~~~~dG~Lyva~~~~~~i~~id~~~~~~~~~~~~~v~~~g~~~~~pdGi~~~---~d-G~l~va~~~~ 270 (332)
....|+||++++||+||+++...++|+||++++. ........ .++..|..++++ +| +.|||+++..
T Consensus 206 ~~~~pdgia~d~dG~l~va~~~~~~V~~i~p~G~-----~~~~~~~~-~~~~~pt~vafg~~~~D~~~Lyvtt~~g 275 (302)
T d2p4oa1 206 EQTNIDDFAFDVEGNLYGATHIYNSVVRIAPDRS-----TTIIAQAE-QGVIGSTAVAFGQTEGDCTAIYVVTNGG 275 (302)
T ss_dssp ESCCCSSEEEBTTCCEEEECBTTCCEEEECTTCC-----EEEEECGG-GTCTTEEEEEECCSTTTTTEEEEEECTT
T ss_pred CCCCCcceEECCCCCEEEEEcCCCcEEEECCCCC-----EEEEEecC-CCCCCceEEEEcCCCCCCCEEEEECCCC
Confidence 2346899999999999999999999999998854 23333333 356789999995 45 4599997653
|
| >d1npea_ b.68.5.1 (A:) Nidogen {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: YWTD domain family: YWTD domain domain: Nidogen species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.65 E-value=5.8e-14 Score=123.21 Aligned_cols=218 Identities=12% Similarity=0.070 Sum_probs=146.6
Q ss_pred CCeEEEEECCCCCCCccceeeeEEecccCcCCCccceEEEeCCCCeEEEEEeCcCCCccceEEEEECCCCcEEEEEecCC
Q 020019 65 DGGIGQVAVPDDYPPGTVLEEVTLVKDLELTGNGSLGLVLDHPRNRLLVVAADVFGNKYSAVAAYDLSTWNRLFLTQLSG 144 (332)
Q Consensus 65 ~g~I~~vd~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~vd~~~g~l~v~~~~~~~~~~~~l~~~d~~~g~~~~~~~l~~ 144 (332)
.+.|.+++.++..... ... ...+..+ ...+.||++|..+++||+++.. .+.|.+.+++.+.......
T Consensus 9 ~~~I~~~~ld~~~~~~-~~~-~~~~~~~---~~~~~~ld~D~~~~~iywsd~~-----~~~I~~~~l~g~~~~~v~~--- 75 (263)
T d1npea_ 9 TGKIERLPLERNTMKK-TEA-KAFLHIP---AKVIIGLAFDCVDKVVYWTDIS-----EPSIGRASLHGGEPTTIIR--- 75 (263)
T ss_dssp EEEEEEEEESSSCBCG-GGC-EEEEEEE---EEEEEEEEEETTTTEEEEEETT-----TTEEEEEESSSCCCEEEEC---
T ss_pred CCeEEEEECCCccccc-ccc-ccccccC---CCcEEEEEEEeCCCEEEEEECC-----CCeEEEEEcccCCcEEEEE---
Confidence 4689999987544210 000 0112111 1246789999888999999863 4578888887655443332
Q ss_pred CCCCCCCccceEECCC-CcEEEEeCCCCeEEEEcCCCceEEEecCCCCCCcccccCccccCeEEEccCc-eEEEEeCCC-
Q 020019 145 PSDGKSCADDVTVDAE-GNAYVTDVTGSKIWKVGVKGEFLSIISSPLFTPKEWYKNLVGLNGIVYHPDG-FLIVIHTFS- 221 (332)
Q Consensus 145 ~~~~~~~~ndiavd~d-G~lyvtd~~~~~I~~v~~~g~~~~~~~~~~~~~p~~~~~~~~~nGi~~~~dG-~Lyva~~~~- 221 (332)
.+...|.++|+|.- ++||++|...+.|.+++.+|+....+.... ...|.+|+++|.. .||+++.+.
T Consensus 76 --~~~~~p~~iAvD~~~~~lY~~d~~~~~I~~~~~dg~~~~~l~~~~---------l~~p~~l~vdp~~g~ly~t~~~~~ 144 (263)
T d1npea_ 76 --QDLGSPEGIALDHLGRTIFWTDSQLDRIEVAKMDGTQRRVLFDTG---------LVNPRGIVTDPVRGNLYWTDWNRD 144 (263)
T ss_dssp --TTCCCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSS---------CSSEEEEEEETTTTEEEEEECCSS
T ss_pred --eccccccEEEEeccCCeEEEeccCCCEEEEEecCCceEEEEeccc---------ccCCcEEEEecccCcEEEeecCCC
Confidence 12467899999974 689999999999999999987543332222 2457899999876 999999864
Q ss_pred -CeEEEEeCCCCCCccceeEEEEecCCCCCCCCeEEEeCC-CeEEEEeCCce-EEEEcCCCceEEEEEeeecCCCcccce
Q 020019 222 -GNLFKIDIVDGVGEGEEIKLIRVAGGPLSFGDGLELLSP-TKLVVAGNPSA-RLVESSDGWETAAVVAKFSGPVHRLAT 298 (332)
Q Consensus 222 -~~i~~id~~~~~~~~~~~~~v~~~g~~~~~pdGi~~~~d-G~l~va~~~~~-~~v~~~dg~~~~~~~~~~~~~~~~~pt 298 (332)
.+|+|.++++. ..+.+.. ..+..|.||++|+. ++||+++.... ......+|.....+.. .+..|.
T Consensus 145 ~~~I~r~~~dG~-----~~~~i~~--~~~~~P~glaiD~~~~~lYw~d~~~~~I~~~~~~g~~~~~v~~-----~~~~P~ 212 (263)
T d1npea_ 145 NPKIETSHMDGT-----NRRILAQ--DNLGLPNGLTFDAFSSQLCWVDAGTHRAECLNPAQPGRRKVLE-----GLQYPF 212 (263)
T ss_dssp SCEEEEEETTSC-----CCEEEEC--TTCSCEEEEEEETTTTEEEEEETTTTEEEEEETTEEEEEEEEE-----CCCSEE
T ss_pred CcEEEEecCCCC-----Cceeeee--ecccccceEEEeecCcEEEEEeCCCCEEEEEECCCCCeEEEEC-----CCCCcE
Confidence 46999999854 2233332 35678999999955 78999985432 2234455623323332 256789
Q ss_pred EEEEECCeEEEEEecCcccc
Q 020019 299 AATVKDGRVYLNHMLGFGYP 318 (332)
Q Consensus 299 ~va~~~g~lyv~~~~g~~~~ 318 (332)
++++.+++||++++-...+-
T Consensus 213 ~lav~~~~lYwtd~~~~~I~ 232 (263)
T d1npea_ 213 AVTSYGKNLYYTDWKTNSVI 232 (263)
T ss_dssp EEEEETTEEEEEETTTTEEE
T ss_pred EEEEECCEEEEEECCCCEEE
Confidence 99999999999887666543
|
| >d2ghsa1 b.68.6.1 (A:20-314) Regucalcin {Agrobacterium tumefaciens [TaxId: 358]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: SGL-like domain: Regucalcin species: Agrobacterium tumefaciens [TaxId: 358]
Probab=99.62 E-value=6e-14 Score=125.11 Aligned_cols=189 Identities=15% Similarity=0.169 Sum_probs=134.4
Q ss_pred ccccceEEcCCCCEEEEEecCCeEEEEECCCCCCCccceeeeEEec-ccCcCCCccceEEEeCCCCeEEEEEeCcCC-Cc
Q 020019 45 FFRECAKWDDSGRRFIVSFLDGGIGQVAVPDDYPPGTVLEEVTLVK-DLELTGNGSLGLVLDHPRNRLLVVAADVFG-NK 122 (332)
Q Consensus 45 ~~pegia~d~~g~~~~~~~~~g~I~~vd~~~~~~~~~~~~~~~~~~-~~~~~~~~~~gi~vd~~~g~l~v~~~~~~~-~~ 122 (332)
..|.+++.+++|+++++. ...|+++++.+++. + .+.. ..+...+.++.+.+|++ |++|+++..... ..
T Consensus 59 ~~~~~i~~~~dg~l~va~--~~gl~~~d~~tg~~-----~--~l~~~~~~~~~~~~nd~~vd~~-G~iw~~~~~~~~~~~ 128 (295)
T d2ghsa1 59 FMGSALAKISDSKQLIAS--DDGLFLRDTATGVL-----T--LHAELESDLPGNRSNDGRMHPS-GALWIGTMGRKAETG 128 (295)
T ss_dssp SCEEEEEEEETTEEEEEE--TTEEEEEETTTCCE-----E--EEECSSTTCTTEEEEEEEECTT-SCEEEEEEETTCCTT
T ss_pred CCcEEEEEecCCCEEEEE--eCccEEeeccccee-----e--EEeeeecCCCcccceeeEECCC-CCEEEEecccccccc
Confidence 367789999999988875 35799999987762 2 2322 12222346899999996 999999875322 12
Q ss_pred cceEEEEECCCCcEEEEEecCCCCCCCCCccceEECCCCc-EEEEeCCCCeEEEEcCCCce-------EEEecCCCCCCc
Q 020019 123 YSAVAAYDLSTWNRLFLTQLSGPSDGKSCADDVTVDAEGN-AYVTDVTGSKIWKVGVKGEF-------LSIISSPLFTPK 194 (332)
Q Consensus 123 ~~~l~~~d~~~g~~~~~~~l~~~~~~~~~~ndiavd~dG~-lyvtd~~~~~I~~v~~~g~~-------~~~~~~~~~~~p 194 (332)
.+.++.+ ..++...... ....+|+++++++++ +|++|+..+.|++++.+.+. ..+....
T Consensus 129 ~g~l~~~--~~g~~~~~~~------~~~~~Ng~~~s~d~~~l~~~dt~~~~I~~~~~d~~~~~~~~~~~~~~~~~----- 195 (295)
T d2ghsa1 129 AGSIYHV--AKGKVTKLFA------DISIPNSICFSPDGTTGYFVDTKVNRLMRVPLDARTGLPTGKAEVFIDST----- 195 (295)
T ss_dssp CEEEEEE--ETTEEEEEEE------EESSEEEEEECTTSCEEEEEETTTCEEEEEEBCTTTCCBSSCCEEEEECT-----
T ss_pred ceeEeee--cCCcEEEEee------ccCCcceeeecCCCceEEEeecccceeeEeeecccccccccceEEEeccC-----
Confidence 3345444 4465543321 136799999999985 99999999999998765321 1222111
Q ss_pred ccccCccccCeEEEccCceEEEEeCCCCeEEEEeCCCCCCccceeEEEEecCCCCCCCCeEEEe-CC-CeEEEEe
Q 020019 195 EWYKNLVGLNGIVYHPDGFLIVIHTFSGNLFKIDIVDGVGEGEEIKLIRVAGGPLSFGDGLELL-SP-TKLVVAG 267 (332)
Q Consensus 195 ~~~~~~~~~nGi~~~~dG~Lyva~~~~~~i~~id~~~~~~~~~~~~~v~~~g~~~~~pdGi~~~-~d-G~l~va~ 267 (332)
.....|+|+++|.+|+||++.+..++|++|++++. .+..+.++. ..|..+++. +| .+|||+.
T Consensus 196 ---~~~g~pdG~~vD~~GnlWva~~~~g~V~~~dp~G~-----~~~~i~lP~---~~~T~~~FGG~d~~~LyvTt 259 (295)
T d2ghsa1 196 ---GIKGGMDGSVCDAEGHIWNARWGEGAVDRYDTDGN-----HIARYEVPG---KQTTCPAFIGPDASRLLVTS 259 (295)
T ss_dssp ---TSSSEEEEEEECTTSCEEEEEETTTEEEEECTTCC-----EEEEEECSC---SBEEEEEEESTTSCEEEEEE
T ss_pred ---cccccccceEEcCCCCEEeeeeCCCceEEecCCCc-----EeeEecCCC---CceEEEEEeCCCCCEEEEEE
Confidence 12346899999999999999999999999998744 677788763 468899996 55 6799985
|
| >d1v04a_ b.68.6.2 (A:) Serum paraoxonase/arylesterase 1, PON1 {Rabit (Oryctolagus cuniculus) [TaxId: 9986]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: Serum paraoxonase/arylesterase 1, PON1 domain: Serum paraoxonase/arylesterase 1, PON1 species: Rabit (Oryctolagus cuniculus) [TaxId: 9986]
Probab=99.62 E-value=2.5e-13 Score=123.45 Aligned_cols=245 Identities=18% Similarity=0.223 Sum_probs=148.9
Q ss_pred ccccceEEcCCCCEEEEE-ec-----------CCeEEEEECCCCCCCccceeeeEEecc-cCcCCCccceEEE--eCCCC
Q 020019 45 FFRECAKWDDSGRRFIVS-FL-----------DGGIGQVAVPDDYPPGTVLEEVTLVKD-LELTGNGSLGLVL--DHPRN 109 (332)
Q Consensus 45 ~~pegia~d~~g~~~~~~-~~-----------~g~I~~vd~~~~~~~~~~~~~~~~~~~-~~~~~~~~~gi~v--d~~~g 109 (332)
..||.|+++++|..|+++ .. .|.|+.+|.++.+.. .....+... +....-.|.||.+ +.+ |
T Consensus 35 ~G~EDi~~~~dg~~~issg~~~~~~~~~~~~~~G~i~~~dl~~~~~~---~~~l~~~~~~~~~~~f~PhGi~l~~~~d-g 110 (340)
T d1v04a_ 35 NGSEDLEILPNGLAFISSGLKYPGIMSFDPDKSGKILLMDLNEKEPA---VSELEIIGNTLDISSFNPHGISTFIDDD-N 110 (340)
T ss_dssp SCCCEEEECTTSEEEEEECCCC--------CCCCEEEEEETTSSSCC---EEECEEECSSSCGGGCCEEEEEEEECTT-C
T ss_pred CCcceEEECCCCcEEEEecCccCCCCCCCCCCCCeEEEEecCCCCCc---ceEEEecCCCCCCcceeccceeEEEcCC-C
Confidence 368999999999888876 21 388999998765421 111122211 2111126899876 332 4
Q ss_pred --eEEEEEeCcCCCccceEEEEECCCCcEEEEEecCCCCCCCCCccceEECCCCcEEEEeCC-----------------C
Q 020019 110 --RLLVVAADVFGNKYSAVAAYDLSTWNRLFLTQLSGPSDGKSCADDVTVDAEGNAYVTDVT-----------------G 170 (332)
Q Consensus 110 --~l~v~~~~~~~~~~~~l~~~d~~~g~~~~~~~l~~~~~~~~~~ndiavd~dG~lyvtd~~-----------------~ 170 (332)
+|||++..... ..-.++.++.+..+......+..| ....|||+++..+|.+|+|+.. .
T Consensus 111 ~~~L~vvnH~~~~-~~ieif~~~~~~~~l~~~~~v~~~--~~~~pNDv~~~~~g~fy~Tnd~~~~~~~~~~~e~~~~~~~ 187 (340)
T d1v04a_ 111 TVYLLVVNHPGSS-STVEVFKFQEEEKSLLHLKTIRHK--LLPSVNDIVAVGPEHFYATNDHYFIDPYLKSWEMHLGLAW 187 (340)
T ss_dssp CEEEEEEECSTTC-CEEEEEEEETTTTEEEEEEEECCT--TCSSEEEEEEEETTEEEEEESCSCCSHHHHHHHHHTTCCC
T ss_pred cEEEEEEeccCCC-ceeEEEEEeCCCCeEEEEeecCCc--cccCccceEEecCCCEEEecCccCcChhhhhhhHhhcCCc
Confidence 57777653221 112345555555556655556433 3578999999999999999742 3
Q ss_pred CeEEEEcCCCceEEEecCCCCCCcccccCccccCeEEEccCc-eEEEEeCCCCeEEEEeCCCCCCccceeEEEEecCCCC
Q 020019 171 SKIWKVGVKGEFLSIISSPLFTPKEWYKNLVGLNGIVYHPDG-FLIVIHTFSGNLFKIDIVDGVGEGEEIKLIRVAGGPL 249 (332)
Q Consensus 171 ~~I~~v~~~g~~~~~~~~~~~~~p~~~~~~~~~nGi~~~~dG-~Lyva~~~~~~i~~id~~~~~~~~~~~~~v~~~g~~~ 249 (332)
+.|+.++++. ..... .++..||||++++|+ +|||+++..++|++++++..+. .+....+.++
T Consensus 188 g~v~~~~~~~-~~~~~-----------~~l~~pNGI~~s~d~~~lyVa~t~~~~i~~y~~~~~~~-l~~~~~~~l~---- 250 (340)
T d1v04a_ 188 SFVTYYSPND-VRVVA-----------EGFDFANGINISPDGKYVYIAELLAHKIHVYEKHANWT-LTPLRVLSFD---- 250 (340)
T ss_dssp EEEEEECSSC-EEEEE-----------EEESSEEEEEECTTSSEEEEEEGGGTEEEEEEECTTSC-EEEEEEEECS----
T ss_pred eeEEEEcCCc-eEEEc-----------CCCCccceeEECCCCCEEEEEeCCCCeEEEEEeCCCcc-cceEEEecCC----
Confidence 4566666542 22222 134579999999999 9999999999999998874321 1122223333
Q ss_pred CCCCeEEEeC-CCeEEEEeCCc--------------eEE--EEc--CCCceEEEEEeeecCCCcccceEEEEECCeEEEE
Q 020019 250 SFGDGLELLS-PTKLVVAGNPS--------------ARL--VES--SDGWETAAVVAKFSGPVHRLATAATVKDGRVYLN 310 (332)
Q Consensus 250 ~~pdGi~~~~-dG~l~va~~~~--------------~~~--v~~--~dg~~~~~~~~~~~~~~~~~pt~va~~~g~lyv~ 310 (332)
..||+|.+|+ +|.+|++.... ..+ +.. ..+++..++... .+..+...|.+...+|+|||.
T Consensus 251 ~~pDNi~~d~~~g~lwva~~p~~~~~~~~~~~~~~~s~v~ri~~~~~~~~~v~~~~~~-~G~~~~~~T~a~~~~g~L~iG 329 (340)
T d1v04a_ 251 TLVDNISVDPVTGDLWVGCHPNGMRIFFYDAENPPGSEVLRIQDILSEEPKVTVVYAE-NGTVLQGSTVAAVYKGKLLIG 329 (340)
T ss_dssp SEEEEEEECTTTCCEEEEEESCHHHHHSCCTTSCCCEEEEEEECTTSSSCEEEEEEEE-CSSSSCSEEEEEEETTEEEEE
T ss_pred CCCCccEEecCCCEEEEEECCcccchhhhcccCCCCceeEEEEeccCCCCeEEEEEeC-CCcEeeceEEEEEECCEEEEE
Confidence 4699999996 68999995321 111 111 122233333222 123344445444489999998
Q ss_pred EecC
Q 020019 311 HMLG 314 (332)
Q Consensus 311 ~~~g 314 (332)
+.+.
T Consensus 330 s~~~ 333 (340)
T d1v04a_ 330 TVFH 333 (340)
T ss_dssp ESSS
T ss_pred eeeC
Confidence 7654
|
| >d1ijqa1 b.68.5.1 (A:377-642) Low density lipoprotein (LDL) receptor {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: YWTD domain family: YWTD domain domain: Low density lipoprotein (LDL) receptor species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.61 E-value=5.5e-13 Score=117.04 Aligned_cols=216 Identities=14% Similarity=0.122 Sum_probs=143.4
Q ss_pred CCeEEEEECCCCCCCccceeeeEEecccCcCCCccceEEEeCCCCeEEEEEeCcCCCccceEEEEECCCCcEE--EEEec
Q 020019 65 DGGIGQVAVPDDYPPGTVLEEVTLVKDLELTGNGSLGLVLDHPRNRLLVVAADVFGNKYSAVAAYDLSTWNRL--FLTQL 142 (332)
Q Consensus 65 ~g~I~~vd~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~vd~~~g~l~v~~~~~~~~~~~~l~~~d~~~g~~~--~~~~l 142 (332)
...|.+++.++... . .+.. +. ..+.+|.+|..+++||+++.. ...|.+.+++..... ....+
T Consensus 9 ~~~I~~~~l~~~~~-----~--~~~~--~~--~~~~~id~d~~~~~lYw~D~~-----~~~I~~~~l~~~~~~~~~~~~~ 72 (266)
T d1ijqa1 9 RHEVRKMTLDRSEY-----T--SLIP--NL--RNVVALDTEVASNRIYWSDLS-----QRMICSTQLDRAHGVSSYDTVI 72 (266)
T ss_dssp BSSEEEEETTSCCC-----E--EEEC--SC--SSEEEEEEETTTTEEEEEETT-----TTEEEEEEC--------CEEEE
T ss_pred CCeEEEEECCCCcc-----e--eeeC--CC--CceEEEEEEeCCCEEEEEECC-----CCEEEEEEecCCCCCcceEEEE
Confidence 35699999986653 1 3432 22 367899999888999999864 346777766432211 11112
Q ss_pred CCCCCCCCCccceEECCC-CcEEEEeCCCCeEEEEcCCCceEEEecCCCCCCcccccCccccCeEEEccC-ceEEEEeCC
Q 020019 143 SGPSDGKSCADDVTVDAE-GNAYVTDVTGSKIWKVGVKGEFLSIISSPLFTPKEWYKNLVGLNGIVYHPD-GFLIVIHTF 220 (332)
Q Consensus 143 ~~~~~~~~~~ndiavd~d-G~lyvtd~~~~~I~~v~~~g~~~~~~~~~~~~~p~~~~~~~~~nGi~~~~d-G~Lyva~~~ 220 (332)
..+...|.++|+|.- ++||++|...++|.+++.+|+......... ...|.+|+++|. |.||+++..
T Consensus 73 ---~~~~~~p~glAvD~~~~~lY~~d~~~~~I~v~~~~g~~~~~~~~~~---------~~~P~~l~vd~~~g~ly~~~~~ 140 (266)
T d1ijqa1 73 ---SRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFREN---------GSKPRAIVVDPVHGFMYWTDWG 140 (266)
T ss_dssp ---CSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSSSEEEEEECT---------TCCEEEEEEETTTTEEEEEECS
T ss_pred ---eCCCCCcceEEEeeccceEEEEecCCCEEEeEecCCceEEEEEcCC---------CCCcceEEEEcccCeEEEeccC
Confidence 122467899999985 689999999999999999987544332221 235789999985 599999976
Q ss_pred C-CeEEEEeCCCCCCccceeEEEEecCCCCCCCCeEEEeCC-CeEEEEeCCceE-EEEcCCCceEEEEEeeecCCCcccc
Q 020019 221 S-GNLFKIDIVDGVGEGEEIKLIRVAGGPLSFGDGLELLSP-TKLVVAGNPSAR-LVESSDGWETAAVVAKFSGPVHRLA 297 (332)
Q Consensus 221 ~-~~i~~id~~~~~~~~~~~~~v~~~g~~~~~pdGi~~~~d-G~l~va~~~~~~-~v~~~dg~~~~~~~~~~~~~~~~~p 297 (332)
. .+|+|.++++. ..+.+.. ..+..|.||++|+. ++||+++..... .....+|.....+... ...+..|
T Consensus 141 ~~~~I~r~~~dGs-----~~~~l~~--~~~~~p~gl~iD~~~~~lYw~d~~~~~I~~~~~dG~~~~~~~~~--~~~~~~p 211 (266)
T d1ijqa1 141 TPAKIKKGGLNGV-----DIYSLVT--ENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRKTILED--EKRLAHP 211 (266)
T ss_dssp SSCEEEEEETTSC-----CEEEEEC--SSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEEEC--TTTTSSE
T ss_pred CCcceeEeccCCC-----ceecccc--cccceeeEEEeeccccEEEEecCCcCEEEEEECCCCCEEEEEeC--CCccccc
Confidence 4 58999999854 2333322 34678999999975 789999854322 2234556232233332 1236679
Q ss_pred eEEEEECCeEEEEEecCccc
Q 020019 298 TAATVKDGRVYLNHMLGFGY 317 (332)
Q Consensus 298 t~va~~~g~lyv~~~~g~~~ 317 (332)
.++++.+++||++++....+
T Consensus 212 ~~lav~~~~ly~td~~~~~I 231 (266)
T d1ijqa1 212 FSLAVFEDKVFWTDIINEAI 231 (266)
T ss_dssp EEEEEETTEEEEEETTTTEE
T ss_pred EEEEEECCEEEEEECCCCeE
Confidence 99999999999987665544
|
| >d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: YVTN repeat domain: Surface layer protein species: Archaeon Methanosarcina mazei [TaxId: 2209]
Probab=99.50 E-value=6e-11 Score=102.85 Aligned_cols=226 Identities=14% Similarity=0.169 Sum_probs=150.8
Q ss_pred CccccceEEcCCCCEEE-EEecCCeEEEEECCCCCCCccceeeeEEecccCcCCCccceEEEeCCCCeEEEEEeCcCCCc
Q 020019 44 SFFRECAKWDDSGRRFI-VSFLDGGIGQVAVPDDYPPGTVLEEVTLVKDLELTGNGSLGLVLDHPRNRLLVVAADVFGNK 122 (332)
Q Consensus 44 ~~~pegia~d~~g~~~~-~~~~~g~I~~vd~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~vd~~~g~l~v~~~~~~~~~ 122 (332)
+..|.+++++++|+.+| ++..+++|..+|..+++. .. ++. . +..+.+++++++...++++..+
T Consensus 31 g~~p~~va~spdG~~l~v~~~~~~~i~v~d~~t~~~----~~--~~~---~--~~~~~~~~~~~~~~~~~~~~~~----- 94 (301)
T d1l0qa2 31 GSNPMGAVISPDGTKVYVANAHSNDVSIIDTATNNV----IA--TVP---A--GSSPQGVAVSPDGKQVYVTNMA----- 94 (301)
T ss_dssp SSSEEEEEECTTSSEEEEEEGGGTEEEEEETTTTEE----EE--EEE---C--SSSEEEEEECTTSSEEEEEETT-----
T ss_pred CCCceEEEEeCCCCEEEEEECCCCEEEEEECCCCce----ee--eee---c--cccccccccccccccccccccc-----
Confidence 45789999999998655 557789999999887652 11 221 1 2368899999974556665543
Q ss_pred cceEEEEECCCCcEEEEEecCCCCCCCCCccceEECCCCc-EEEEeCCCCeEEEEcCCC-ceEEEecCCCCCCcccccCc
Q 020019 123 YSAVAAYDLSTWNRLFLTQLSGPSDGKSCADDVTVDAEGN-AYVTDVTGSKIWKVGVKG-EFLSIISSPLFTPKEWYKNL 200 (332)
Q Consensus 123 ~~~l~~~d~~~g~~~~~~~l~~~~~~~~~~ndiavd~dG~-lyvtd~~~~~I~~v~~~g-~~~~~~~~~~~~~p~~~~~~ 200 (332)
...+..++..+++....+.. ...+..+++.++|+ ++++......+..++... +....... .
T Consensus 95 ~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~dg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------~ 157 (301)
T d1l0qa2 95 SSTLSVIDTTSNTVAGTVKT------GKSPLGLALSPDGKKLYVTNNGDKTVSVINTVTKAVINTVSV-----------G 157 (301)
T ss_dssp TTEEEEEETTTTEEEEEEEC------SSSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEEC-----------C
T ss_pred cceeeecccccceeeeeccc------cccceEEEeecCCCeeeeeeccccceeeeeccccceeeeccc-----------C
Confidence 34677899988877665543 24678899999986 677887778777777653 33322211 2
Q ss_pred cccCeEEEccCc-eEEEEeCCCCeEEEEeCCCCCCccceeEEEEecCCCCCCCCeEEEeCCCe-EEEEeCC----ceEEE
Q 020019 201 VGLNGIVYHPDG-FLIVIHTFSGNLFKIDIVDGVGEGEEIKLIRVAGGPLSFGDGLELLSPTK-LVVAGNP----SARLV 274 (332)
Q Consensus 201 ~~~nGi~~~~dG-~Lyva~~~~~~i~~id~~~~~~~~~~~~~v~~~g~~~~~pdGi~~~~dG~-l~va~~~----~~~~v 274 (332)
..+..+++++++ .+|++....+.+...+.... .....+... ..|.+++++++|+ +|++... ...+.
T Consensus 158 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~----~~~~~~~~~~~g~~~~v~~~~~~~~~v~v~ 229 (301)
T d1l0qa2 158 RSPKGIAVTPDGTKVYVANFDSMSISVIDTVTN----SVIDTVKVE----AAPSGIAVNPEGTKAYVTNVDKYFNTVSMI 229 (301)
T ss_dssp SSEEEEEECTTSSEEEEEETTTTEEEEEETTTT----EEEEEEECS----SEEEEEEECTTSSEEEEEEECSSCCEEEEE
T ss_pred CCceEEEeeccccceeeecccccccccccccce----eeeeccccc----CCcceeeccccccccccccccceeeeeeee
Confidence 346789999999 99999988887777776654 123333322 5688999998865 6666422 23334
Q ss_pred EcCCCceEEEEEeeecCCCcccceEEEE-E-CCeEEEEEecCcc
Q 020019 275 ESSDGWETAAVVAKFSGPVHRLATAATV-K-DGRVYLNHMLGFG 316 (332)
Q Consensus 275 ~~~dg~~~~~~~~~~~~~~~~~pt~va~-~-~g~lyv~~~~g~~ 316 (332)
...++ ++...+.. ...|+++++ . +++|||+......
T Consensus 230 D~~t~----~~~~~~~~--~~~~~~va~spdg~~l~va~~~~~~ 267 (301)
T d1l0qa2 230 DTGTN----KITARIPV--GPDPAGIAVTPDGKKVYVALSFCNT 267 (301)
T ss_dssp ETTTT----EEEEEEEC--CSSEEEEEECTTSSEEEEEETTTTE
T ss_pred ecCCC----eEEEEEcC--CCCEEEEEEeCCCCEEEEEECCCCe
Confidence 45555 34444432 346899999 4 4579998766544
|
| >d1ri6a_ b.69.11.1 (A:) Putative isomerase YbhE {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Putative isomerase YbhE family: Putative isomerase YbhE domain: Putative isomerase YbhE species: Escherichia coli [TaxId: 562]
Probab=99.33 E-value=9.8e-10 Score=96.52 Aligned_cols=259 Identities=10% Similarity=0.092 Sum_probs=148.8
Q ss_pred eeEEEecCCccccceEEcCCCCEEEEE-ecCCeEEEEECCCCCCCccceeeeEEecccCcCCCccceEEEeCCCCeEEEE
Q 020019 36 HVYHYHSSSFFRECAKWDDSGRRFIVS-FLDGGIGQVAVPDDYPPGTVLEEVTLVKDLELTGNGSLGLVLDHPRNRLLVV 114 (332)
Q Consensus 36 ~~i~~~~~~~~pegia~d~~g~~~~~~-~~~g~I~~vd~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~vd~~~g~l~v~ 114 (332)
..++....+-.|.+++++|||+.+|+. ..++.|..++.+..... . +...... .+..|.+|+++++...||++
T Consensus 28 ~~~~~~~~~~~v~~la~spDG~~L~v~~~~d~~i~~~~i~~~~~~---~---~~~~~~~-~~~~p~~l~~spDg~~l~v~ 100 (333)
T d1ri6a_ 28 TLTQVVDVPGQVQPMVVSPDKRYLYVGVRPEFRVLAYRIAPDDGA---L---TFAAESA-LPGSLTHISTDHQGQFVFVG 100 (333)
T ss_dssp EEEEEEECSSCCCCEEECTTSSEEEEEETTTTEEEEEEECTTTCC---E---EEEEEEE-CSSCCSEEEECTTSSEEEEE
T ss_pred EEEEEEcCCCCEeEEEEeCCCCEEEEEECCCCeEEEEEEeCCCCc---E---EEeeecc-cCCCceEEEEcCCCCEEeec
Confidence 334443444578999999999977655 55788877665543320 1 2221111 22368899999984457777
Q ss_pred EeCcCCCccceEEEEECCCCcEEEEEecCCCCCCCCCccceEECCCCc-EEEEeCCCCeEEEEcCC--CceEEEecCCCC
Q 020019 115 AADVFGNKYSAVAAYDLSTWNRLFLTQLSGPSDGKSCADDVTVDAEGN-AYVTDVTGSKIWKVGVK--GEFLSIISSPLF 191 (332)
Q Consensus 115 ~~~~~~~~~~~l~~~d~~~g~~~~~~~l~~~~~~~~~~ndiavd~dG~-lyvtd~~~~~I~~v~~~--g~~~~~~~~~~~ 191 (332)
+.+ ...+..|+............. .....+++++++++|+ +|+++.....|..++.. +...........
T Consensus 101 ~~~-----~~~v~~~~~~~~~~~~~~~~~---~~~~~~~~v~~s~d~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~ 172 (333)
T d1ri6a_ 101 SYN-----AGNVSVTRLEDGLPVGVVDVV---EGLDGCHSANISPDNRTLWVPALKQDRICLFTVSDDGHLVAQDPAEVT 172 (333)
T ss_dssp ETT-----TTEEEEEEEETTEEEEEEEEE---CCCTTBCCCEECTTSSEEEEEEGGGTEEEEEEECTTSCEEEEEEEEEE
T ss_pred ccC-----CCceeeeccccccceeccccc---CCCccceEEEeeecceeeeccccccceeeEEEeccCCcceeeeceeee
Confidence 643 345666776655544433331 1246788999999986 78888888877776644 322211110000
Q ss_pred CCcccccCccccCeEEEccCc-eEEEEeCCCCeEEEEeCCCCCCccceeEEEEe-c--CCCCCCCCeEEEeCCCe-EEEE
Q 020019 192 TPKEWYKNLVGLNGIVYHPDG-FLIVIHTFSGNLFKIDIVDGVGEGEEIKLIRV-A--GGPLSFGDGLELLSPTK-LVVA 266 (332)
Q Consensus 192 ~~p~~~~~~~~~nGi~~~~dG-~Lyva~~~~~~i~~id~~~~~~~~~~~~~v~~-~--g~~~~~pdGi~~~~dG~-l~va 266 (332)
......|..+++++++ .+|++....+.....+.......-.....+.. + ......|.++++.+||+ +|++
T Consensus 173 -----~~~g~~p~~i~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~~~~~ 247 (333)
T d1ri6a_ 173 -----TVEGAGPRHMVFHPNEQYAYCVNELNSSVDVWELKDPHGNIECVQTLDMMPENFSDTRWAADIHITPDGRHLYAC 247 (333)
T ss_dssp -----CSTTCCEEEEEECTTSSEEEEEETTTTEEEEEESSCTTSCCEEEEEEECSCTTCCSCCCEEEEEECTTSSEEEEE
T ss_pred -----eecCCCccEEEEeccceeEEeeccccCceEEEeecccccceeeeeeeeeeecCCCccccceeEEEecccCceeee
Confidence 0123457899999999 99999888777655554422110011222221 1 11234577889999976 5655
Q ss_pred eCC--ceEE-EEcCCCceEEEEEeeecCCCcccceEEEE-E-CCeEEEEEecCccc
Q 020019 267 GNP--SARL-VESSDGWETAAVVAKFSGPVHRLATAATV-K-DGRVYLNHMLGFGY 317 (332)
Q Consensus 267 ~~~--~~~~-v~~~dg~~~~~~~~~~~~~~~~~pt~va~-~-~g~lyv~~~~g~~~ 317 (332)
+.. ...+ ....++ ...++..... ....|.++++ . ++.|||++..+..+
T Consensus 248 ~~~~~~~~~~~~~~~~-~~~~~~~~~~--~~~~p~~~a~spDGk~l~va~~~~~~v 300 (333)
T d1ri6a_ 248 DRTASLITVFSVSEDG-SVLSKEGFQP--TETQPRGFNVDHSGKYLIAAGQKSHHI 300 (333)
T ss_dssp ETTTTEEEEEEECTTS-CCEEEEEEEE--CSSSCCCEEECTTSSEEEEECTTTCEE
T ss_pred cccCCeEEEEEEcCCC-CEEEEEEEeC--CCCCeeEEEEeCCCCEEEEEECCCCeE
Confidence 532 2222 233444 3334443332 2356889999 4 55689987666543
|
| >d1jofa_ b.69.10.1 (A:) 3-carboxy-cis,cis-mucoante lactonizing enzyme {Neurospora crassa [TaxId: 5141]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: 3-carboxy-cis,cis-mucoante lactonizing enzyme family: 3-carboxy-cis,cis-mucoante lactonizing enzyme domain: 3-carboxy-cis,cis-mucoante lactonizing enzyme species: Neurospora crassa [TaxId: 5141]
Probab=99.31 E-value=2.2e-10 Score=104.44 Aligned_cols=252 Identities=13% Similarity=0.039 Sum_probs=142.7
Q ss_pred cccceEEcCCCCEEEEEec-CCeEEEEECCCCCCCccceeeeEEecccCcCCCccceEEEeCCCCeEEEEEeCcCCCccc
Q 020019 46 FRECAKWDDSGRRFIVSFL-DGGIGQVAVPDDYPPGTVLEEVTLVKDLELTGNGSLGLVLDHPRNRLLVVAADVFGNKYS 124 (332)
Q Consensus 46 ~pegia~d~~g~~~~~~~~-~g~I~~vd~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~vd~~~g~l~v~~~~~~~~~~~ 124 (332)
.|..++++++++.+|+... .-..+.++.+++. . .....+ .+..|..+.++++...+|++....+. .
T Consensus 41 ~~s~la~s~d~~~ly~~~~~~~~~~~i~~~~~~-----~---~~~~~~--~~~~p~~v~~~~~~~~~~v~~a~~~~---~ 107 (365)
T d1jofa_ 41 PISWMTFDHERKNIYGAAMKKWSSFAVKSPTEI-----V---HEASHP--IGGHPRANDADTNTRAIFLLAAKQPP---Y 107 (365)
T ss_dssp CCSEEEECTTSSEEEEEEBTEEEEEEEEETTEE-----E---EEEEEE--CCSSGGGGCTTSCCEEEEEEECSSTT---C
T ss_pred CCCEEEEcCCCCEEEEEeCCcEEEEEEeCCCCe-----E---EEeeec--CCCCcEEEEECCCCCEEEEEEecCCC---C
Confidence 4567999999998777632 2245666655332 1 121112 12368888988874557777654321 1
Q ss_pred eEEEEEC-------------CCCcEEEEEecCCCCCCCCCccceEECCCCc-EEEEeCCCCeEEEEc--CCCceEEEecC
Q 020019 125 AVAAYDL-------------STWNRLFLTQLSGPSDGKSCADDVTVDAEGN-AYVTDVTGSKIWKVG--VKGEFLSIISS 188 (332)
Q Consensus 125 ~l~~~d~-------------~~g~~~~~~~l~~~~~~~~~~ndiavd~dG~-lyvtd~~~~~I~~v~--~~g~~~~~~~~ 188 (332)
.+..+.. ..++......-. ..+....+++++++|||+ +|++|.+.++|++++ .+|+.......
T Consensus 108 ~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~q~~~h~h~v~~sPdG~~l~v~d~g~d~v~~~~~~~~g~~~~~~~~ 186 (365)
T d1jofa_ 108 AVYANPFYKFAGYGNVFSVSETGKLEKNVQNY-EYQENTGIHGMVFDPTETYLYSADLTANKLWTHRKLASGEVELVGSV 186 (365)
T ss_dssp CEEEEEESSSCCEEEEEEECTTCCEEEEEEEE-ECCTTCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSCEEEEEEE
T ss_pred EEEEeEccCCCCcceeEeeeecceecCcccCc-ccCCCCcceEEEECCCCCEEEEeeCCCCEEEEEEccCCCceeeccce
Confidence 2222211 122222111110 012346789999999996 999999999887765 44554332111
Q ss_pred CCCCCcccccCccccCeEEEccCc-eEEEEeCCCCeEEEEeCCCCCCcc-ceeEEEEec--C---------CCCCCCCeE
Q 020019 189 PLFTPKEWYKNLVGLNGIVYHPDG-FLIVIHTFSGNLFKIDIVDGVGEG-EEIKLIRVA--G---------GPLSFGDGL 255 (332)
Q Consensus 189 ~~~~~p~~~~~~~~~nGi~~~~dG-~Lyva~~~~~~i~~id~~~~~~~~-~~~~~v~~~--g---------~~~~~pdGi 255 (332)
... ....+|.+++++||| .+|+++..+++|..++.+.++... .....+..- + .....+..|
T Consensus 187 ~~~------~~g~gPr~i~f~pdg~~~yv~~e~~~~V~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 260 (365)
T d1jofa_ 187 DAP------DPGDHPRWVAMHPTGNYLYALMEAGNRICEYVIDPATHMPVYTHHSFPLIPPGIPDRDPETGKGLYRADVC 260 (365)
T ss_dssp ECS------STTCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEEESSCTTCCCBCTTTSSBSEEEEEE
T ss_pred eec------CCCCceEEEEECCCCceEEEeccCCCEEEEEEecCCCceEEEEeeeeccccccccccccccccccCCccce
Confidence 011 123578999999999 999999999999888877543210 011222211 0 011236689
Q ss_pred EEeCCCe-EEEEeC--Cc-----eE-EEEcCCCceEEEEEeeec-CCCcccceEEEE-E--CCeEEEEEecCcccc
Q 020019 256 ELLSPTK-LVVAGN--PS-----AR-LVESSDGWETAAVVAKFS-GPVHRLATAATV-K--DGRVYLNHMLGFGYP 318 (332)
Q Consensus 256 ~~~~dG~-l~va~~--~~-----~~-~v~~~dg~~~~~~~~~~~-~~~~~~pt~va~-~--~g~lyv~~~~g~~~~ 318 (332)
++++||+ ||+++. .. +. +....++ .......... .....+|.++++ . +..|||++..+..+.
T Consensus 261 ~~spdG~~lyvsnr~~~~~~~~~i~~~~~~~~g-~~~~~~~~~~~~~~G~~p~~i~~~p~~G~~l~va~~~s~~v~ 335 (365)
T d1jofa_ 261 ALTFSGKYMFASSRANKFELQGYIAGFKLRDCG-SIEKQLFLSPTPTSGGHSNAVSPCPWSDEWMAITDDQEGWLE 335 (365)
T ss_dssp EECTTSSEEEEEEEESSTTSCCEEEEEEECTTS-CEEEEEEEEECSSCCTTCCCEEECTTCTTEEEEECSSSCEEE
T ss_pred EECCCCCEEEEEcccCCCccceEEEEEEecCCC-ceeeEeEeeEEEcCCCCccEEEecCCCCCEEEEEeCCCCeEE
Confidence 9999987 788752 11 11 1223444 3322222111 123567888988 3 456999888777655
|
| >d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: YVTN repeat domain: Surface layer protein species: Archaeon Methanosarcina mazei [TaxId: 2209]
Probab=99.31 E-value=3.9e-09 Score=91.03 Aligned_cols=207 Identities=19% Similarity=0.240 Sum_probs=136.0
Q ss_pred EEEEEecCCeEEEEECCCCCCCccceeeeEEecccCcCCCccceEEEeCCCCeEEEEEeCcCCCccceEEEEECCCCcEE
Q 020019 58 RFIVSFLDGGIGQVAVPDDYPPGTVLEEVTLVKDLELTGNGSLGLVLDHPRNRLLVVAADVFGNKYSAVAAYDLSTWNRL 137 (332)
Q Consensus 58 ~~~~~~~~g~I~~vd~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~vd~~~g~l~v~~~~~~~~~~~~l~~~d~~~g~~~ 137 (332)
+|+++..+++|..+|..+++. .. ++. .+..|.+++++++..+||++... .+.|.+||.++++..
T Consensus 4 ~yV~~~~~~~v~v~D~~t~~~----~~--~i~-----~g~~p~~va~spdG~~l~v~~~~-----~~~i~v~d~~t~~~~ 67 (301)
T d1l0qa2 4 AYIANSESDNISVIDVTSNKV----TA--TIP-----VGSNPMGAVISPDGTKVYVANAH-----SNDVSIIDTATNNVI 67 (301)
T ss_dssp EEEEETTTTEEEEEETTTTEE----EE--EEE-----CSSSEEEEEECTTSSEEEEEEGG-----GTEEEEEETTTTEEE
T ss_pred EEEEECCCCEEEEEECCCCeE----EE--EEE-----CCCCceEEEEeCCCCEEEEEECC-----CCEEEEEECCCCcee
Confidence 455567789999999987762 22 221 12368999999984457887753 457999999998877
Q ss_pred EEEecCCCCCCCCCccceEECCCCc-EEEEeCCCCeEEEEcCCC-ceEEEecCCCCCCcccccCccccCeEEEccCc-eE
Q 020019 138 FLTQLSGPSDGKSCADDVTVDAEGN-AYVTDVTGSKIWKVGVKG-EFLSIISSPLFTPKEWYKNLVGLNGIVYHPDG-FL 214 (332)
Q Consensus 138 ~~~~l~~~~~~~~~~ndiavd~dG~-lyvtd~~~~~I~~v~~~g-~~~~~~~~~~~~~p~~~~~~~~~nGi~~~~dG-~L 214 (332)
..+.. ...+.+++++++|+ +|++......+..++... +....+.. ...+..+++++|| .+
T Consensus 68 ~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~~dg~~~ 130 (301)
T d1l0qa2 68 ATVPA------GSSPQGVAVSPDGKQVYVTNMASSTLSVIDTTSNTVAGTVKT-----------GKSPLGLALSPDGKKL 130 (301)
T ss_dssp EEEEC------SSSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEEC-----------SSSEEEEEECTTSSEE
T ss_pred eeeec------cccccccccccccccccccccccceeeecccccceeeeeccc-----------cccceEEEeecCCCee
Confidence 65543 24678999999986 788888888888888763 43333322 1346789999999 88
Q ss_pred EEEeCCCCeEEEEeCCCCCCccceeEEEEecCCCCCCCCeEEEeCCC-eEEEEeCCc-eEEEEcCCCceEEEEEeeecCC
Q 020019 215 IVIHTFSGNLFKIDIVDGVGEGEEIKLIRVAGGPLSFGDGLELLSPT-KLVVAGNPS-ARLVESSDGWETAAVVAKFSGP 292 (332)
Q Consensus 215 yva~~~~~~i~~id~~~~~~~~~~~~~v~~~g~~~~~pdGi~~~~dG-~l~va~~~~-~~~v~~~dg~~~~~~~~~~~~~ 292 (332)
+++....+.+..++..+.. .+..+.. ...|..+++.+++ .+|+++... ...+......+ +......
T Consensus 131 ~~~~~~~~~~~~~~~~~~~----~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~- 198 (301)
T d1l0qa2 131 YVTNNGDKTVSVINTVTKA----VINTVSV----GRSPKGIAVTPDGTKVYVANFDSMSISVIDTVTNS---VIDTVKV- 198 (301)
T ss_dssp EEEETTTTEEEEEETTTTE----EEEEEEC----CSSEEEEEECTTSSEEEEEETTTTEEEEEETTTTE---EEEEEEC-
T ss_pred eeeeccccceeeeeccccc----eeeeccc----CCCceEEEeeccccceeeeccccccccccccccee---eeecccc-
Confidence 9998888888888888762 3433332 2467889999885 477776443 22233333212 2222221
Q ss_pred CcccceEEEE--ECCeEEEE
Q 020019 293 VHRLATAATV--KDGRVYLN 310 (332)
Q Consensus 293 ~~~~pt~va~--~~g~lyv~ 310 (332)
...|.++++ .+..+|+.
T Consensus 199 -~~~~~~~~~~~~g~~~~v~ 217 (301)
T d1l0qa2 199 -EAAPSGIAVNPEGTKAYVT 217 (301)
T ss_dssp -SSEEEEEEECTTSSEEEEE
T ss_pred -cCCcceeeccccccccccc
Confidence 234666666 45566664
|
| >d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase species: Paracoccus denitrificans [TaxId: 266]
Probab=99.21 E-value=5e-09 Score=97.40 Aligned_cols=207 Identities=17% Similarity=0.054 Sum_probs=130.1
Q ss_pred cccceEEcCC-CCEEEEE-ecCCeEEEEECCCCCCCccceeeeEEecccCcCCCccceEEEeCCCCeEEEEEeCcCCCcc
Q 020019 46 FRECAKWDDS-GRRFIVS-FLDGGIGQVAVPDDYPPGTVLEEVTLVKDLELTGNGSLGLVLDHPRNRLLVVAADVFGNKY 123 (332)
Q Consensus 46 ~pegia~d~~-g~~~~~~-~~~g~I~~vd~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~vd~~~g~l~v~~~~~~~~~~ 123 (332)
.|.....+.+ .+++++. ..+|+|..+|..+++. +. ++. .+..|.++++.||..++|++.. .
T Consensus 20 ~~~~~~~~~~~~~~~~v~~~d~g~v~v~D~~t~~v----~~--~~~-----~g~~~~~v~fSpDG~~l~~~s~------d 82 (432)
T d1qksa2 20 RPTQQMNDWDLENLFSVTLRDAGQIALIDGSTYEI----KT--VLD-----TGYAVHISRLSASGRYLFVIGR------D 82 (432)
T ss_dssp SCSSCCSCCCGGGEEEEEETTTTEEEEEETTTCCE----EE--EEE-----CSSCEEEEEECTTSCEEEEEET------T
T ss_pred CCCceeecCCCCcEEEEEEcCCCEEEEEECCCCcE----EE--EEe-----CCCCeeEEEECCCCCEEEEEcC------C
Confidence 4444544444 3465555 7789999999988762 22 232 2347899999998445666654 3
Q ss_pred ceEEEEECCCCcEEEEEecCCCCCCCCCccceEE----CCCCc-EEEEeCCCCeEEEEcCC-CceEEEecCCCCCC-ccc
Q 020019 124 SAVAAYDLSTWNRLFLTQLSGPSDGKSCADDVTV----DAEGN-AYVTDVTGSKIWKVGVK-GEFLSIISSPLFTP-KEW 196 (332)
Q Consensus 124 ~~l~~~d~~~g~~~~~~~l~~~~~~~~~~ndiav----d~dG~-lyvtd~~~~~I~~v~~~-g~~~~~~~~~~~~~-p~~ 196 (332)
+.+.+||.++++.....++. . ...+.++++ .|||+ +|++.+..+.|..+|.. ++............ ...
T Consensus 83 g~v~~~d~~t~~~~~~~~i~--~--~~~~~~~~~s~~~SpDG~~l~vs~~~~~~v~i~d~~t~~~~~~~~~~~~~~~~~~ 158 (432)
T d1qksa2 83 GKVNMIDLWMKEPTTVAEIK--I--GSEARSIETSKMEGWEDKYAIAGAYWPPQYVIMDGETLEPKKIQSTRGMTYDEQE 158 (432)
T ss_dssp SEEEEEETTSSSCCEEEEEE--C--CSEEEEEEECCSTTCTTTEEEEEEEETTEEEEEETTTCCEEEEEECCEECTTTCC
T ss_pred CCEEEEEeeCCCceEEEEEe--c--CCCCCCeEEecccCCCCCEEEEEcCCCCeEEEEeCccccceeeeccCCcccccee
Confidence 56889999887754333431 1 234555655 45886 79999999999999976 55444322111000 000
Q ss_pred ccCccccCeEEEccCc-eEEEEeCCCCeEEEEeCCCCCCccceeEEEEecCCCCCCCCeEEEeCCCe-EEEEeCCc--eE
Q 020019 197 YKNLVGLNGIVYHPDG-FLIVIHTFSGNLFKIDIVDGVGEGEEIKLIRVAGGPLSFGDGLELLSPTK-LVVAGNPS--AR 272 (332)
Q Consensus 197 ~~~~~~~nGi~~~~dG-~Lyva~~~~~~i~~id~~~~~~~~~~~~~v~~~g~~~~~pdGi~~~~dG~-l~va~~~~--~~ 272 (332)
........+|++++|| .+|++...+++|+.++..+.+. ..+..+... ..|.++++++||+ +|++.+.. ..
T Consensus 159 ~~~~~~~~~v~~s~dg~~~~vs~~~~~~i~~~d~~~~~~--~~~~~i~~g----~~~~~~~~spdg~~~~va~~~~~~v~ 232 (432)
T d1qksa2 159 YHPEPRVAAILASHYRPEFIVNVKETGKILLVDYTDLNN--LKTTEISAE----RFLHDGGLDGSHRYFITAANARNKLV 232 (432)
T ss_dssp EESCCCEEEEEECSSSSEEEEEETTTTEEEEEETTCSSE--EEEEEEECC----SSEEEEEECTTSCEEEEEEGGGTEEE
T ss_pred ccCCCceeEEEECCCCCEEEEEEccCCeEEEEEccCCCc--ceEEEEccc----CccccceECCCCCEEEEeccccceEE
Confidence 0112345678999999 9999999999999999887631 122333322 4688999999988 66666433 23
Q ss_pred EEEcCCC
Q 020019 273 LVESSDG 279 (332)
Q Consensus 273 ~v~~~dg 279 (332)
++....+
T Consensus 233 v~d~~~~ 239 (432)
T d1qksa2 233 VIDTKEG 239 (432)
T ss_dssp EEETTTT
T ss_pred Eeecccc
Confidence 3344444
|
| >d1jofa_ b.69.10.1 (A:) 3-carboxy-cis,cis-mucoante lactonizing enzyme {Neurospora crassa [TaxId: 5141]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: 3-carboxy-cis,cis-mucoante lactonizing enzyme family: 3-carboxy-cis,cis-mucoante lactonizing enzyme domain: 3-carboxy-cis,cis-mucoante lactonizing enzyme species: Neurospora crassa [TaxId: 5141]
Probab=99.20 E-value=2.3e-09 Score=97.61 Aligned_cols=248 Identities=14% Similarity=0.106 Sum_probs=131.6
Q ss_pred CccccceEEcCCCCE-EEEE--ecCCeEEEEECCCCCCCccc--------eeeeEEecccCc-CCCccceEEEeCCCCeE
Q 020019 44 SFFRECAKWDDSGRR-FIVS--FLDGGIGQVAVPDDYPPGTV--------LEEVTLVKDLEL-TGNGSLGLVLDHPRNRL 111 (332)
Q Consensus 44 ~~~pegia~d~~g~~-~~~~--~~~g~I~~vd~~~~~~~~~~--------~~~~~~~~~~~~-~~~~~~gi~vd~~~g~l 111 (332)
+..|..++++++++. |+.. ...+.|+.+..........+ .+. ... .+.. .+.++.++.++|+..++
T Consensus 82 ~~~p~~v~~~~~~~~~~v~~a~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~-~~~-~~~~q~~~h~h~v~~sPdG~~l 159 (365)
T d1jofa_ 82 GGHPRANDADTNTRAIFLLAAKQPPYAVYANPFYKFAGYGNVFSVSETGKLEK-NVQ-NYEYQENTGIHGMVFDPTETYL 159 (365)
T ss_dssp CSSGGGGCTTSCCEEEEEEECSSTTCCEEEEEESSSCCEEEEEEECTTCCEEE-EEE-EEECCTTCCEEEEEECTTSSEE
T ss_pred CCCcEEEEECCCCCEEEEEEecCCCCEEEEeEccCCCCcceeEeeeecceecC-ccc-CcccCCCCcceEEEECCCCCEE
Confidence 447888999999975 4443 33455655432211000000 000 010 0111 11268899999985568
Q ss_pred EEEEeCcCCCccceEEEEECC-CCcEEEEEecCCCCCCCCCccceEECCCCc-EEEEeCCCCeEEEEcCCCc---eEEEe
Q 020019 112 LVVAADVFGNKYSAVAAYDLS-TWNRLFLTQLSGPSDGKSCADDVTVDAEGN-AYVTDVTGSKIWKVGVKGE---FLSII 186 (332)
Q Consensus 112 ~v~~~~~~~~~~~~l~~~d~~-~g~~~~~~~l~~~~~~~~~~ndiavd~dG~-lyvtd~~~~~I~~v~~~g~---~~~~~ 186 (332)
|+++.+ ..+|++|+.. +++......+..+. ....|.+++++|+|+ +|+++...+.|..++.+.. .....
T Consensus 160 ~v~d~g-----~d~v~~~~~~~~g~~~~~~~~~~~~-~g~gPr~i~f~pdg~~~yv~~e~~~~V~v~~~~~~~~~~~~~~ 233 (365)
T d1jofa_ 160 YSADLT-----ANKLWTHRKLASGEVELVGSVDAPD-PGDHPRWVAMHPTGNYLYALMEAGNRICEYVIDPATHMPVYTH 233 (365)
T ss_dssp EEEETT-----TTEEEEEEECTTSCEEEEEEEECSS-TTCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEE
T ss_pred EEeeCC-----CCEEEEEEccCCCceeeccceeecC-CCCceEEEEECCCCceEEEeccCCCEEEEEEecCCCceEEEEe
Confidence 988763 3467777643 45544332222112 246899999999996 8999999999887775522 11111
Q ss_pred cC-----CCCC--CcccccCccccCeEEEccCc-eEEEEeCCCCe-----EEEEeCCC-CCCccceeEEEEecCCCCCCC
Q 020019 187 SS-----PLFT--PKEWYKNLVGLNGIVYHPDG-FLIVIHTFSGN-----LFKIDIVD-GVGEGEEIKLIRVAGGPLSFG 252 (332)
Q Consensus 187 ~~-----~~~~--~p~~~~~~~~~nGi~~~~dG-~Lyva~~~~~~-----i~~id~~~-~~~~~~~~~~v~~~g~~~~~p 252 (332)
.. .... .+........+..|+++||| .||+++...+. |..++... +... ......... .....|
T Consensus 234 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~spdG~~lyvsnr~~~~~~~~~i~~~~~~~~g~~~-~~~~~~~~~-~~G~~p 311 (365)
T d1jofa_ 234 HSFPLIPPGIPDRDPETGKGLYRADVCALTFSGKYMFASSRANKFELQGYIAGFKLRDCGSIE-KQLFLSPTP-TSGGHS 311 (365)
T ss_dssp EEEESSCTTCCCBCTTTSSBSEEEEEEEECTTSSEEEEEEEESSTTSCCEEEEEEECTTSCEE-EEEEEEECS-SCCTTC
T ss_pred eeeccccccccccccccccccCCccceEECCCCCEEEEEcccCCCccceEEEEEEecCCCcee-eEeEeeEEE-cCCCCc
Confidence 10 0010 01111223457789999999 99999865433 65555442 2110 011111222 123579
Q ss_pred CeEEEeC-CCe-EEEEeCCceE-EEEcCCCceEEEEEeeecCCCcccceEEEE
Q 020019 253 DGLELLS-PTK-LVVAGNPSAR-LVESSDGWETAAVVAKFSGPVHRLATAATV 302 (332)
Q Consensus 253 dGi~~~~-dG~-l~va~~~~~~-~v~~~dg~~~~~~~~~~~~~~~~~pt~va~ 302 (332)
.+|++++ +|+ |||++..+.. .++..++ ........+..|.-.+|.++.+
T Consensus 312 ~~i~~~p~~G~~l~va~~~s~~v~v~~~~~-~~l~~~~~~~vp~p~~~~~~~w 363 (365)
T d1jofa_ 312 NAVSPCPWSDEWMAITDDQEGWLEIYRWKD-EFLHRVARVRIPEPGFGMNAIW 363 (365)
T ss_dssp CCEEECTTCTTEEEEECSSSCEEEEEEEET-TEEEEEEEEECCSTTEEEEEEE
T ss_pred cEEEecCCCCCEEEEEeCCCCeEEEEEEeC-CcCcEEEEEECCCCCCCeEEEe
Confidence 9999997 677 8888754332 2222223 2233444444344445554443
|
| >d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Quinohemoprotein amine dehydrogenase B chain domain: Quinohemoprotein amine dehydrogenase B chain species: Paracoccus denitrificans [TaxId: 266]
Probab=99.15 E-value=3.6e-08 Score=85.91 Aligned_cols=216 Identities=11% Similarity=0.012 Sum_probs=130.0
Q ss_pred EEEecCCccccceEEcCCCCEEEE-EecCCeEEEEECCCCCCCccceeeeEEec-ccCcCCCccceEEEeCCCCeEEEEE
Q 020019 38 YHYHSSSFFRECAKWDDSGRRFIV-SFLDGGIGQVAVPDDYPPGTVLEEVTLVK-DLELTGNGSLGLVLDHPRNRLLVVA 115 (332)
Q Consensus 38 i~~~~~~~~pegia~d~~g~~~~~-~~~~g~I~~vd~~~~~~~~~~~~~~~~~~-~~~~~~~~~~gi~vd~~~g~l~v~~ 115 (332)
+.+...+..|.+++++|||+.+|+ +..++.|..+|..+++. .. .+.. .+...+..+.+++++++...+|++.
T Consensus 27 i~~~~~~~~~~~i~~spDg~~l~v~~~~~~~v~v~D~~t~~~----~~--~~~~~~~~~~~~~~~~v~~s~dg~~l~~~~ 100 (337)
T d1pbyb_ 27 ITIADAGPTPMVPMVAPGGRIAYATVNKSESLVKIDLVTGET----LG--RIDLSTPEERVKSLFGAALSPDGKTLAIYE 100 (337)
T ss_dssp EECTTCTTCCCCEEECTTSSEEEEEETTTTEEEEEETTTCCE----EE--EEECCBTTEEEECTTCEEECTTSSEEEEEE
T ss_pred EECCCCCCCccEEEECCCCCEEEEEECCCCeEEEEECCCCcE----EE--EEecCCCcccccceeeEEEcCCCcEEEEee
Confidence 444455668999999999997654 46689999999988762 22 1211 1111123578999999866777776
Q ss_pred eCcCC------CccceEEEEECCCCcEEEEEecCCCCCCCCCccceEECCCCc-EEEEeCCCCeEEEEcCC-CceEEEec
Q 020019 116 ADVFG------NKYSAVAAYDLSTWNRLFLTQLSGPSDGKSCADDVTVDAEGN-AYVTDVTGSKIWKVGVK-GEFLSIIS 187 (332)
Q Consensus 116 ~~~~~------~~~~~l~~~d~~~g~~~~~~~l~~~~~~~~~~ndiavd~dG~-lyvtd~~~~~I~~v~~~-g~~~~~~~ 187 (332)
..... .....+..+|..+++....+.. ...++++++++||. +|+++ +.+..++.. ++......
T Consensus 101 ~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~------~~~~~~~~~s~dg~~l~~~~---~~~~~~d~~~~~~~~~~~ 171 (337)
T d1pbyb_ 101 SPVRLELTHFEVQPTRVALYDAETLSRRKAFEA------PRQITMLAWARDGSKLYGLG---RDLHVMDPEAGTLVEDKP 171 (337)
T ss_dssp EEEEECSSCEEECCCEEEEEETTTTEEEEEEEC------CSSCCCEEECTTSSCEEEES---SSEEEEETTTTEEEEEEC
T ss_pred cCCcceeeeccccccceeeccccCCeEEEeccc------cCCceEEEEcCCCCEEEEEc---CCcceeeeecCcEEEEee
Confidence 43110 1234677899998887665543 24578899999986 67664 223344433 22211110
Q ss_pred CCCCC-----Ccc---------------------------------------------------cccCccccCeEEEccC
Q 020019 188 SPLFT-----PKE---------------------------------------------------WYKNLVGLNGIVYHPD 211 (332)
Q Consensus 188 ~~~~~-----~p~---------------------------------------------------~~~~~~~~nGi~~~~d 211 (332)
..... .|. ..+....+..++++++
T Consensus 172 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 251 (337)
T d1pbyb_ 172 IQSWEAETYAQPDVLAVWNQHESSGVMATPFYTARKDIDPADPTAYRTGLLTMDLETGEMAMREVRIMDVFYFSTAVNPA 251 (337)
T ss_dssp STTTTTTTBCCCBCCCCCCCCTTTTEEEEEEEEEBTTSCTTSGGGEEEEEEEEETTTCCEEEEEEEECSSCEEEEEECTT
T ss_pred cCCccccceecCCcceeeccccccceeeeeeeeeeeccceeeecccCccEEEEEcCCCcEEEEEecCCCcceEEEEeccc
Confidence 00000 000 0112223445667778
Q ss_pred c-eEEEEeCCCCeEEEEeCCCCCCccceeEEEEecCCCCCCCCeEEEeCCCe-EEEEeCC-ceEEEEcCCC
Q 020019 212 G-FLIVIHTFSGNLFKIDIVDGVGEGEEIKLIRVAGGPLSFGDGLELLSPTK-LVVAGNP-SARLVESSDG 279 (332)
Q Consensus 212 G-~Lyva~~~~~~i~~id~~~~~~~~~~~~~v~~~g~~~~~pdGi~~~~dG~-l~va~~~-~~~~v~~~dg 279 (332)
+ .+|..+ +.|..+|+.++ +.+..+..+ ..|.+|++++||+ ||++... ...+.....+
T Consensus 252 ~~~~~~~~---~~i~v~d~~~~----~~~~~~~~~----~~~~~~~~s~dG~~l~v~~~~~~i~v~D~~t~ 311 (337)
T d1pbyb_ 252 KTRAFGAY---NVLESFDLEKN----ASIKRVPLP----HSYYSVNVSTDGSTVWLGGALGDLAAYDAETL 311 (337)
T ss_dssp SSEEEEEE---SEEEEEETTTT----EEEEEEECS----SCCCEEEECTTSCEEEEESBSSEEEEEETTTC
T ss_pred ceEEEEcc---ccEEEEECCCC----cEEEEEcCC----CCEEEEEECCCCCEEEEEeCCCcEEEEECCCC
Confidence 7 777664 67888999877 245555543 4678999999987 6777543 3444455656
|
| >d1ri6a_ b.69.11.1 (A:) Putative isomerase YbhE {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Putative isomerase YbhE family: Putative isomerase YbhE domain: Putative isomerase YbhE species: Escherichia coli [TaxId: 562]
Probab=99.13 E-value=9e-09 Score=90.13 Aligned_cols=236 Identities=13% Similarity=0.135 Sum_probs=132.7
Q ss_pred cCCccccceEEcCCCCEEEEE-ecCCeEEEEECCCCCCCccceeeeEEecccCcCCCccceEEEeCCCCeEEEEEeCcCC
Q 020019 42 SSSFFRECAKWDDSGRRFIVS-FLDGGIGQVAVPDDYPPGTVLEEVTLVKDLELTGNGSLGLVLDHPRNRLLVVAADVFG 120 (332)
Q Consensus 42 ~~~~~pegia~d~~g~~~~~~-~~~g~I~~vd~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~vd~~~g~l~v~~~~~~~ 120 (332)
..+..|.++++++||+.+++. ...+.|..++...... .. ..... .....+.++.++++...+++++..
T Consensus 80 ~~~~~p~~l~~spDg~~l~v~~~~~~~v~~~~~~~~~~----~~---~~~~~-~~~~~~~~v~~s~d~~~~~~~~~~--- 148 (333)
T d1ri6a_ 80 ALPGSLTHISTDHQGQFVFVGSYNAGNVSVTRLEDGLP----VG---VVDVV-EGLDGCHSANISPDNRTLWVPALK--- 148 (333)
T ss_dssp ECSSCCSEEEECTTSSEEEEEETTTTEEEEEEEETTEE----EE---EEEEE-CCCTTBCCCEECTTSSEEEEEEGG---
T ss_pred ccCCCceEEEEcCCCCEEeecccCCCceeeeccccccc----ee---ccccc-CCCccceEEEeeecceeeeccccc---
Confidence 345578999999999977666 5567777776554431 11 11111 112367889999985566766653
Q ss_pred CccceEEEEECCCCcEEEEE---ecCCCCCCCCCccceEECCCCc-EEEEeCCCCeEE--EEcCCCceEEEe-cCCCCCC
Q 020019 121 NKYSAVAAYDLSTWNRLFLT---QLSGPSDGKSCADDVTVDAEGN-AYVTDVTGSKIW--KVGVKGEFLSII-SSPLFTP 193 (332)
Q Consensus 121 ~~~~~l~~~d~~~g~~~~~~---~l~~~~~~~~~~ndiavd~dG~-lyvtd~~~~~I~--~v~~~g~~~~~~-~~~~~~~ 193 (332)
...+..|+..+....... ... ......|..+++++++. +|++....+... .++......... .....
T Consensus 149 --~~~i~~~~~~~~~~~~~~~~~~~~--~~~g~~p~~i~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~-- 222 (333)
T d1ri6a_ 149 --QDRICLFTVSDDGHLVAQDPAEVT--TVEGAGPRHMVFHPNEQYAYCVNELNSSVDVWELKDPHGNIECVQTLDMM-- 222 (333)
T ss_dssp --GTEEEEEEECTTSCEEEEEEEEEE--CSTTCCEEEEEECTTSSEEEEEETTTTEEEEEESSCTTSCCEEEEEEECS--
T ss_pred --cceeeEEEeccCCcceeeeceeee--eecCCCccEEEEeccceeEEeeccccCceEEEeecccccceeeeeeeeee--
Confidence 346777887654322211 111 11246788999999975 677776666544 443332211110 00000
Q ss_pred cccccCccccCeEEEccCc-eEEEEeCCCCeEEEEeCCCCCCccceeEEEEecCCCCCCCCeEEEeCCCe-EEEEeCCc-
Q 020019 194 KEWYKNLVGLNGIVYHPDG-FLIVIHTFSGNLFKIDIVDGVGEGEEIKLIRVAGGPLSFGDGLELLSPTK-LVVAGNPS- 270 (332)
Q Consensus 194 p~~~~~~~~~nGi~~~~dG-~Lyva~~~~~~i~~id~~~~~~~~~~~~~v~~~g~~~~~pdGi~~~~dG~-l~va~~~~- 270 (332)
+........+.++++++|| .+|++....+.+..+.....+ ...+..... .....|.+++++|||+ |||++...
T Consensus 223 ~~~~~~~~~~~~~~~s~d~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~-~~~~~p~~~a~spDGk~l~va~~~~~ 298 (333)
T d1ri6a_ 223 PENFSDTRWAADIHITPDGRHLYACDRTASLITVFSVSEDG---SVLSKEGFQ-PTETQPRGFNVDHSGKYLIAAGQKSH 298 (333)
T ss_dssp CTTCCSCCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTS---CCEEEEEEE-ECSSSCCCEEECTTSSEEEEECTTTC
T ss_pred ecCCCccccceeEEEecccCceeeecccCCeEEEEEEcCCC---CEEEEEEEe-CCCCCeeEEEEeCCCCEEEEEECCCC
Confidence 0001133457789999999 999999888866555444221 122222211 1225689999999998 78886432
Q ss_pred -eEE--EEcCCCceEEEEEeeecCCCcccceEEEE
Q 020019 271 -ARL--VESSDGWETAAVVAKFSGPVHRLATAATV 302 (332)
Q Consensus 271 -~~~--v~~~dg~~~~~~~~~~~~~~~~~pt~va~ 302 (332)
+.+ +...+| +. +.+..++. ...|.++++
T Consensus 299 ~v~v~~id~~tG-~l-~~~~~~~~--g~~p~~v~~ 329 (333)
T d1ri6a_ 299 HISVYEIVGEQG-LL-HEKGRYAV--GQGPMWVVV 329 (333)
T ss_dssp EEEEEEEETTTT-EE-EEEEEEEC--SSSCCEEEE
T ss_pred eEEEEEEECCCC-cE-EEEEeccC--CCCCcEEEE
Confidence 232 234456 33 23334433 345877776
|
| >d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Quinohemoprotein amine dehydrogenase B chain domain: Quinohemoprotein amine dehydrogenase B chain species: Paracoccus denitrificans [TaxId: 266]
Probab=99.12 E-value=3.8e-08 Score=85.78 Aligned_cols=136 Identities=9% Similarity=0.035 Sum_probs=88.6
Q ss_pred EEEEecCCeEEEEECCCCCCCccceeeeEEecccCcCCCccceEEEeCCCCeEEEEEeCcCCCccceEEEEECCCCcEEE
Q 020019 59 FIVSFLDGGIGQVAVPDDYPPGTVLEEVTLVKDLELTGNGSLGLVLDHPRNRLLVVAADVFGNKYSAVAAYDLSTWNRLF 138 (332)
Q Consensus 59 ~~~~~~~g~I~~vd~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~vd~~~g~l~v~~~~~~~~~~~~l~~~d~~~g~~~~ 138 (332)
+++...+++|..||..+++. .. ++. .++ .+..|.+++++|+...||++... .+.|.+||.++++...
T Consensus 4 ~vt~~~d~~v~v~D~~s~~~----~~--~i~-~~~-~~~~~~~i~~spDg~~l~v~~~~-----~~~v~v~D~~t~~~~~ 70 (337)
T d1pbyb_ 4 ILAPARPDKLVVIDTEKMAV----DK--VIT-IAD-AGPTPMVPMVAPGGRIAYATVNK-----SESLVKIDLVTGETLG 70 (337)
T ss_dssp EEEEETTTEEEEEETTTTEE----EE--EEE-CTT-CTTCCCCEEECTTSSEEEEEETT-----TTEEEEEETTTCCEEE
T ss_pred EEEEcCCCEEEEEECCCCeE----EE--EEE-CCC-CCCCccEEEECCCCCEEEEEECC-----CCeEEEEECCCCcEEE
Confidence 34446689999999987652 22 222 222 22468899999973356777542 4579999999999887
Q ss_pred EEecCCCCCCCCCccceEECCCCc-EEEEeC-----------CCCeEEEEcCC-CceEEEecCCCCCCcccccCccccCe
Q 020019 139 LTQLSGPSDGKSCADDVTVDAEGN-AYVTDV-----------TGSKIWKVGVK-GEFLSIISSPLFTPKEWYKNLVGLNG 205 (332)
Q Consensus 139 ~~~l~~~~~~~~~~ndiavd~dG~-lyvtd~-----------~~~~I~~v~~~-g~~~~~~~~~~~~~p~~~~~~~~~nG 205 (332)
......+......+.++++.|+|+ +|++.. ....+..++.. ++...... ....+.+
T Consensus 71 ~~~~~~~~~~~~~~~~v~~s~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~-----------~~~~~~~ 139 (337)
T d1pbyb_ 71 RIDLSTPEERVKSLFGAALSPDGKTLAIYESPVRLELTHFEVQPTRVALYDAETLSRRKAFE-----------APRQITM 139 (337)
T ss_dssp EEECCBTTEEEECTTCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEETTTTEEEEEEE-----------CCSSCCC
T ss_pred EEecCCCcccccceeeEEEcCCCcEEEEeecCCcceeeeccccccceeeccccCCeEEEecc-----------ccCCceE
Confidence 776643222235788999999986 777654 23455556554 23222221 1235789
Q ss_pred EEEccCc-eEEEEe
Q 020019 206 IVYHPDG-FLIVIH 218 (332)
Q Consensus 206 i~~~~dG-~Lyva~ 218 (332)
+++++|| .+|++.
T Consensus 140 ~~~s~dg~~l~~~~ 153 (337)
T d1pbyb_ 140 LAWARDGSKLYGLG 153 (337)
T ss_dssp EEECTTSSCEEEES
T ss_pred EEEcCCCCEEEEEc
Confidence 9999999 888864
|
| >d1crua_ b.68.2.1 (A:) Soluble quinoprotein glucose dehydrogenase {Acinetobacter calcoaceticus [TaxId: 471]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Soluble quinoprotein glucose dehydrogenase family: Soluble quinoprotein glucose dehydrogenase domain: Soluble quinoprotein glucose dehydrogenase species: Acinetobacter calcoaceticus [TaxId: 471]
Probab=99.12 E-value=1.8e-08 Score=94.17 Aligned_cols=121 Identities=16% Similarity=0.188 Sum_probs=74.4
Q ss_pred EEEecCCc-cccceEEcCCCCEEEEEecCCeEEEEECCCCCCCccceeeeEEecccCc----CC-CccceEEEeCC---C
Q 020019 38 YHYHSSSF-FRECAKWDDSGRRFIVSFLDGGIGQVAVPDDYPPGTVLEEVTLVKDLEL----TG-NGSLGLVLDHP---R 108 (332)
Q Consensus 38 i~~~~~~~-~pegia~d~~g~~~~~~~~~g~I~~vd~~~~~~~~~~~~~~~~~~~~~~----~~-~~~~gi~vd~~---~ 108 (332)
+++...++ .|.+|++.++|++|++....|+|++++.++++. . .+..-+.. .+ .+..||++||+ +
T Consensus 19 ~~~ia~~L~~P~~la~~pdg~llVter~~G~i~~v~~~~g~~-----~--~i~~~~~~~~~~~ge~GLLgia~~Pdf~~n 91 (450)
T d1crua_ 19 KKVILSNLNKPHALLWGPDNQIWLTERATGKILRVNPESGSV-----K--TVFQVPEIVNDADGQNGLLGFAFHPDFKNN 91 (450)
T ss_dssp EEEEECCCSSEEEEEECTTSCEEEEETTTCEEEEECTTTCCE-----E--EEEECTTCCCCTTSSCSEEEEEECTTTTTS
T ss_pred EEEEECCCCCceEEEEeCCCeEEEEEecCCEEEEEECCCCcE-----e--ecccCCccccccCCCCceeeEEeCCCCccC
Confidence 34444555 999999999999998886679999999876652 1 22221221 11 36789999984 5
Q ss_pred CeEEEEEeCcCC-------CccceEEEEECCCC--cEEE----EEecCCCCCCCCCccceEECCCCcEEEEe
Q 020019 109 NRLLVVAADVFG-------NKYSAVAAYDLSTW--NRLF----LTQLSGPSDGKSCADDVTVDAEGNAYVTD 167 (332)
Q Consensus 109 g~l~v~~~~~~~-------~~~~~l~~~d~~~g--~~~~----~~~l~~~~~~~~~~ndiavd~dG~lyvtd 167 (332)
+.+|++...... .....+.++..+.. .... ...+ +..+.++...|++++||.|||+-
T Consensus 92 ~~iYvsyt~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~i~~~~--p~~~~H~gg~l~fgpDG~LYvs~ 161 (450)
T d1crua_ 92 PYIYISGTFKNPKSTDKELPNQTIIRRYTYNKSTDTLEKPVDLLAGL--PSSKDHQSGRLVIGPDQKIYYTI 161 (450)
T ss_dssp CEEEEEEEEECTTC--CCSCEEEEEEEEEEETTTTEEEEEEEEEEEE--CCCSSCCEEEEEECTTSCEEEEE
T ss_pred CEEEEEEecCCCCCcccccccceEEEeeecccccccccceEEEeecc--cccccccccceeEcCCCCEEEEe
Confidence 889997542110 01122444433222 2211 1122 22345788899999999999973
|
| >d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Quinohemoprotein amine dehydrogenase B chain domain: Quinohemoprotein amine dehydrogenase B chain species: Pseudomonas putida [TaxId: 303]
Probab=99.04 E-value=2.8e-08 Score=86.99 Aligned_cols=106 Identities=16% Similarity=0.164 Sum_probs=75.6
Q ss_pred ceEEcCCCCEEEEEecCCeEEEEECCCCCCCccceeeeEEecccCcCCCccceEEEeCCCCeEEEEEeCcCCCccceEEE
Q 020019 49 CAKWDDSGRRFIVSFLDGGIGQVAVPDDYPPGTVLEEVTLVKDLELTGNGSLGLVLDHPRNRLLVVAADVFGNKYSAVAA 128 (332)
Q Consensus 49 gia~d~~g~~~~~~~~~g~I~~vd~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~vd~~~g~l~v~~~~~~~~~~~~l~~ 128 (332)
|++++++++.+++...+++|+.+|..+++. .. .+.-+. +.+|.+++++||...+||+... .+.|.+
T Consensus 1 g~a~~~~~~~l~~~~~~~~v~v~D~~t~~~----~~---t~~~~~--~~~p~~l~~spDG~~l~v~~~~-----~~~v~~ 66 (346)
T d1jmxb_ 1 GPALKAGHEYMIVTNYPNNLHVVDVASDTV----YK---SCVMPD--KFGPGTAMMAPDNRTAYVLNNH-----YGDIYG 66 (346)
T ss_dssp CCCCCTTCEEEEEEETTTEEEEEETTTTEE----EE---EEECSS--CCSSCEEEECTTSSEEEEEETT-----TTEEEE
T ss_pred CccCCCCCcEEEEEcCCCEEEEEECCCCCE----EE---EEEcCC--CCCcceEEECCCCCEEEEEECC-----CCcEEE
Confidence 688999998887777789999999987752 22 222222 2378999999974457777643 467999
Q ss_pred EECCCCcEEEEEecCCCCC-CCCCccceEECCCCc-EEEEeC
Q 020019 129 YDLSTWNRLFLTQLSGPSD-GKSCADDVTVDAEGN-AYVTDV 168 (332)
Q Consensus 129 ~d~~~g~~~~~~~l~~~~~-~~~~~ndiavd~dG~-lyvtd~ 168 (332)
||+++++............ ....|.++++++||+ +|+++.
T Consensus 67 ~d~~t~~~~~~~~~~~~~~~~~~~~~~v~~s~DG~~l~v~~~ 108 (346)
T d1jmxb_ 67 IDLDTCKNTFHANLSSVPGEVGRSMYSFAISPDGKEVYATVN 108 (346)
T ss_dssp EETTTTEEEEEEESCCSTTEEEECSSCEEECTTSSEEEEEEE
T ss_pred EeCccCeeeeeecccccccccCCceEEEEEecCCCEEEEEec
Confidence 9999998887666532111 124688999999985 888753
|
| >d1mdah_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Methylamine dehydrogenase, H-chain domain: Methylamine dehydrogenase, H-chain species: Paracoccus denitrificans [TaxId: 266]
Probab=99.01 E-value=5.8e-08 Score=87.26 Aligned_cols=232 Identities=10% Similarity=-0.011 Sum_probs=128.8
Q ss_pred cceEEcCCCCEEEEE-e---------cCCeEEEEECCCCCCCccceeeeEEecccC-cCCCccceEEEeCCCCeEEEEEe
Q 020019 48 ECAKWDDSGRRFIVS-F---------LDGGIGQVAVPDDYPPGTVLEEVTLVKDLE-LTGNGSLGLVLDHPRNRLLVVAA 116 (332)
Q Consensus 48 egia~d~~g~~~~~~-~---------~~g~I~~vd~~~~~~~~~~~~~~~~~~~~~-~~~~~~~gi~vd~~~g~l~v~~~ 116 (332)
.++++++||+.+++. . .++.|..+|..+++. .........+. ..+..|.++++.+|..+||+++.
T Consensus 68 ~~~a~spDg~~i~~~~~~~~~~~~g~~d~~v~v~D~~t~~~----~~~i~~p~~~~~~~g~~p~~~a~SpDGk~l~va~~ 143 (368)
T d1mdah_ 68 SLAVAGHSGSDFALASTSFARSAKGKRTDYVEVFDPVTFLP----IADIELPDAPRFSVGPRVHIIGNCASSACLLFFLF 143 (368)
T ss_dssp CEEEECTTSSCEEEEEEEETTTTSSSEEEEEEEECTTTCCE----EEEEEETTSCSCCBSCCTTSEEECTTSSCEEEEEC
T ss_pred CcceECCCCCEEEEEcccCccccccccCCeEEEEECCCCcE----eeeecCCccceecccCCccceEECCCCCEEEEEeC
Confidence 379999999866543 2 134699999887762 22111111111 12346889999998556888765
Q ss_pred CcCCCccceEEEEECCCCcEEEEEecCCCCC--CCCCccceEECCCCcEEEEeC-C------------------------
Q 020019 117 DVFGNKYSAVAAYDLSTWNRLFLTQLSGPSD--GKSCADDVTVDAEGNAYVTDV-T------------------------ 169 (332)
Q Consensus 117 ~~~~~~~~~l~~~d~~~g~~~~~~~l~~~~~--~~~~~ndiavd~dG~lyvtd~-~------------------------ 169 (332)
. .+.+..||+++++.......+.... ......-+++.+||.+++.+. .
T Consensus 144 ~-----~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~Dg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 218 (368)
T d1mdah_ 144 G-----SSAAAGLSVPGASDDQLTKSASCFHIHPGAAATHYLGSCPASLAASDLAAAPAAAGIVGAQCTGAQNCSSQAAQ 218 (368)
T ss_dssp S-----SSCEEEEEETTTEEEEEEECSSCCCCEEEETTEEECCCCTTSCEEEECCSSCCCCEECCCCSCTTSCBCSCCEE
T ss_pred C-----CCeEEEEECCCCcEeEEeeccCcceEccCCCceEEEEcCCCCEEEEEecCCceeeeeeecccccccccceeecc
Confidence 3 3568889999988877665532100 001122244455555332221 0
Q ss_pred -----------CCeEEEEcCCCceEEEecCCCCCCccc---ccCccccCeEEEccCc-eEEEEeCCC--------CeEEE
Q 020019 170 -----------GSKIWKVGVKGEFLSIISSPLFTPKEW---YKNLVGLNGIVYHPDG-FLIVIHTFS--------GNLFK 226 (332)
Q Consensus 170 -----------~~~I~~v~~~g~~~~~~~~~~~~~p~~---~~~~~~~nGi~~~~dG-~Lyva~~~~--------~~i~~ 226 (332)
.+.++.++.++.....+.......... .....+...+++++++ .+|++.... ++|+.
T Consensus 219 ~~~~g~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~a~~~~~~~~~v~~~~~~~~~~~~~~~v~v 298 (368)
T d1mdah_ 219 ANYPGMLVWAVASSILQGDIPAAGATMKAAIDGNESGRKADNFRSAGFQMVAKLKNTDGIMILTVEHSRSCLAAAENTSS 298 (368)
T ss_dssp ETTTTEEEECBSSCCEEEECCSSCCEEECCCCSSCTHHHHTTEEECSSSCEEEETTTTEEEEEEEECSSCTTSCEEEEEE
T ss_pred cccCcEEEEecCCCEEEEeecCCceEEEeecccccceeeeeeecCCCceeEEEcCCCCEEEEEecCCCceeecCCceEEE
Confidence 122222322211111111000000000 0112346789999998 999886432 46888
Q ss_pred EeCCCCCCccceeEEEEecCCCCCCCCeEEEeCCCe--EEEEeCC--ceEEEEcCCCceEEEEEeeecCCCcccceEEEE
Q 020019 227 IDIVDGVGEGEEIKLIRVAGGPLSFGDGLELLSPTK--LVVAGNP--SARLVESSDGWETAAVVAKFSGPVHRLATAATV 302 (332)
Q Consensus 227 id~~~~~~~~~~~~~v~~~g~~~~~pdGi~~~~dG~--l~va~~~--~~~~v~~~dg~~~~~~~~~~~~~~~~~pt~va~ 302 (332)
+|..+++ .+..+... ..|.++++.+||+ ||+++.. ...++...+| +.+..++. ...|+.+++
T Consensus 299 ~D~~t~~----~~~~~~~~----~~~~~~a~spDG~~~ly~s~~~~~~v~v~D~~tg----k~~~~i~~--g~~P~~l~~ 364 (368)
T d1mdah_ 299 VTASVGQ----TSGPISNG----HDSDAIIAAQDGASDNYANSAGTEVLDIYDAASD----QDQSSVEL--DKGPESLSV 364 (368)
T ss_dssp EESSSCC----EEECCEEE----EEECEEEECCSSSCEEEEEETTTTEEEEEESSSC----EEEEECCC--CSCCCEEEC
T ss_pred EECCCCc----EeEEecCC----CceeEEEECCCCCEEEEEEeCCCCeEEEEECCCC----CEEEEEEC--CCCCCEEEE
Confidence 9998873 44444432 3578999999986 7888643 3454556666 55666553 356999887
|
| >d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Methylamine dehydrogenase, H-chain domain: Methylamine dehydrogenase, H-chain species: Paracoccus denitrificans [TaxId: 266]
Probab=98.99 E-value=1.4e-07 Score=83.22 Aligned_cols=233 Identities=12% Similarity=0.034 Sum_probs=126.7
Q ss_pred ceEEcCCCCEEEEE-e---------cCCeEEEEECCCCCCCccceeeeEEecccC-cCCCccceEEEeCCCCeEEEEEeC
Q 020019 49 CAKWDDSGRRFIVS-F---------LDGGIGQVAVPDDYPPGTVLEEVTLVKDLE-LTGNGSLGLVLDHPRNRLLVVAAD 117 (332)
Q Consensus 49 gia~d~~g~~~~~~-~---------~~g~I~~vd~~~~~~~~~~~~~~~~~~~~~-~~~~~~~gi~vd~~~g~l~v~~~~ 117 (332)
+++++|||+.+++. . .++.|..+|..+++. .........+. ..+..|.++++.++.+++|++...
T Consensus 51 ~~a~SpDg~~l~v~~~~~~~~~~g~~d~~v~v~D~~t~~~----~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~v~~~~ 126 (355)
T d2bbkh_ 51 NPVVADDGSFIAHASTVFSRIARGERTDYVEVFDPVTLLP----TADIELPDAPRFLVGTYPWMTSLTPDGKTLLFYQFS 126 (355)
T ss_dssp EEEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTCCE----EEEEEETTCCCCCBSCCGGGEEECTTSSEEEEEECS
T ss_pred ceEEcCCCCEEEEEeCCCccccccCCCCEEEEEECCCCCE----EEEEecCCcceeecCCCCceEEEecCCCeeEEecCC
Confidence 79999999966543 2 246799999987762 22111111111 112468899999986678887653
Q ss_pred cCCCccceEEEEECCCCcEEEEEecCCCCC--CCCCccceEECCCCc-EEEEeCC-------------------------
Q 020019 118 VFGNKYSAVAAYDLSTWNRLFLTQLSGPSD--GKSCADDVTVDAEGN-AYVTDVT------------------------- 169 (332)
Q Consensus 118 ~~~~~~~~l~~~d~~~g~~~~~~~l~~~~~--~~~~~ndiavd~dG~-lyvtd~~------------------------- 169 (332)
....+..+|..+++....+....... .......+++.+||. +++....
T Consensus 127 ----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 202 (355)
T d2bbkh_ 127 ----PAPAVGVVDLEGKAFKRMLDVPDCYHIFPTAPDTFFMHCRDGSLAKVAFGTEGTPEITHTEVFHPEDEFLINHPAY 202 (355)
T ss_dssp ----SSCEEEEEETTTTEEEEEEECCSEEEEEEEETTEEEEEETTSCEEEEECCSSSCCEEEECCCCSCTTSCBCSCCEE
T ss_pred ----CCceeeeeecCCCcEeeEEecCCcceEeecCCcceEEEcCCCCEEEEEecCCCeEEEEecccccceecceeeeccc
Confidence 23456778888877665544321000 011223355556653 4443222
Q ss_pred ------------CCeEEEEcCCCceEEEecCCCCCCccc---ccCccccCeEEEccCc-eEEEEeCCC---------CeE
Q 020019 170 ------------GSKIWKVGVKGEFLSIISSPLFTPKEW---YKNLVGLNGIVYHPDG-FLIVIHTFS---------GNL 224 (332)
Q Consensus 170 ------------~~~I~~v~~~g~~~~~~~~~~~~~p~~---~~~~~~~nGi~~~~dG-~Lyva~~~~---------~~i 224 (332)
.+.++.++..+.....+.......... .....+...+++++|+ .+|++.... +.|
T Consensus 203 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~v 282 (355)
T d2bbkh_ 203 SQKAGRLVWPTYTGKIHQIDLSSGDAKFLPAVEALTEAERADGWRPGGWQQVAYHRALDRIYLLVDQRDEWRHKTASRFV 282 (355)
T ss_dssp ETTTTEEEEEBTTSEEEEEECTTSSCEECCCEESSCHHHHHTTEEECSSSCEEEETTTTEEEEEEEECCTTCTTSCEEEE
T ss_pred cCCCCeEEEecCCCeEEEEecCCCcEEEEeccCCcccceEeeeeeccceEEEEEeCCCCeEEEEeccCCceeecCCCCeE
Confidence 222333222211000000000000000 0011245679999999 888876532 468
Q ss_pred EEEeCCCCCCccceeEEEEecCCCCCCCCeEEEeCCCe--EEEEeC--CceEEEEcCCCceEEEEEeeecCCCcccceEE
Q 020019 225 FKIDIVDGVGEGEEIKLIRVAGGPLSFGDGLELLSPTK--LVVAGN--PSARLVESSDGWETAAVVAKFSGPVHRLATAA 300 (332)
Q Consensus 225 ~~id~~~~~~~~~~~~~v~~~g~~~~~pdGi~~~~dG~--l~va~~--~~~~~v~~~dg~~~~~~~~~~~~~~~~~pt~v 300 (332)
+.+|+.+++ .+..+... ..|.++++++||+ ||+++. +.+.+....+| +++..+... ...|..+
T Consensus 283 ~v~d~~t~~----~~~~~~~~----~~~~~~a~spDG~~~l~v~~~~d~~i~v~D~~tg----~~~~~i~~~-G~~p~~i 349 (355)
T d2bbkh_ 283 VVLDAKTGE----RLAKFEMG----HEIDSINVSQDEKPLLYALSTGDKTLYIHDAESG----EELRSVNQL-GHGPQVI 349 (355)
T ss_dssp EEEETTTCC----EEEEEEEE----EEECEEEECCSSSCEEEEEETTTTEEEEEETTTC----CEEEEECCC-CSSCCEE
T ss_pred EEEeCCCCc----EEEEecCC----CCEEEEEEcCCCCeEEEEEECCCCEEEEEECCCC----CEEEEEeCc-CCCccEE
Confidence 889988773 45555543 3578999999987 667753 33455566677 444444322 3568888
Q ss_pred EE
Q 020019 301 TV 302 (332)
Q Consensus 301 a~ 302 (332)
++
T Consensus 350 ~~ 351 (355)
T d2bbkh_ 350 TT 351 (355)
T ss_dssp EC
T ss_pred Ee
Confidence 77
|
| >d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Quinohemoprotein amine dehydrogenase B chain domain: Quinohemoprotein amine dehydrogenase B chain species: Pseudomonas putida [TaxId: 303]
Probab=98.98 E-value=6.5e-09 Score=91.16 Aligned_cols=159 Identities=13% Similarity=0.102 Sum_probs=102.0
Q ss_pred eEEEeCCCCeEEEEEeCcCCCccceEEEEECCCCcEEEEEecCCCCCCCCCccceEECCCCc-EEEEeCCCCeEEEEcCC
Q 020019 101 GLVLDHPRNRLLVVAADVFGNKYSAVAAYDLSTWNRLFLTQLSGPSDGKSCADDVTVDAEGN-AYVTDVTGSKIWKVGVK 179 (332)
Q Consensus 101 gi~vd~~~g~l~v~~~~~~~~~~~~l~~~d~~~g~~~~~~~l~~~~~~~~~~ndiavd~dG~-lyvtd~~~~~I~~v~~~ 179 (332)
|+++.++ ++.+++.. ..+.|.+||++++++...+.++ . ...|.++++.|||+ +|+++...+.|+.+|..
T Consensus 1 g~a~~~~-~~~l~~~~-----~~~~v~v~D~~t~~~~~t~~~~--~--~~~p~~l~~spDG~~l~v~~~~~~~v~~~d~~ 70 (346)
T d1jmxb_ 1 GPALKAG-HEYMIVTN-----YPNNLHVVDVASDTVYKSCVMP--D--KFGPGTAMMAPDNRTAYVLNNHYGDIYGIDLD 70 (346)
T ss_dssp CCCCCTT-CEEEEEEE-----TTTEEEEEETTTTEEEEEEECS--S--CCSSCEEEECTTSSEEEEEETTTTEEEEEETT
T ss_pred CccCCCC-CcEEEEEc-----CCCEEEEEECCCCCEEEEEEcC--C--CCCcceEEECCCCCEEEEEECCCCcEEEEeCc
Confidence 4567775 77666554 2467999999999988777763 2 35789999999996 89999999999999987
Q ss_pred -CceEEEecCCCCCCcccccCccccCeEEEccCc-eEEEEeCC-----------CCeEEEEeCCCCCCccceeEEEEecC
Q 020019 180 -GEFLSIISSPLFTPKEWYKNLVGLNGIVYHPDG-FLIVIHTF-----------SGNLFKIDIVDGVGEGEEIKLIRVAG 246 (332)
Q Consensus 180 -g~~~~~~~~~~~~~p~~~~~~~~~nGi~~~~dG-~Lyva~~~-----------~~~i~~id~~~~~~~~~~~~~v~~~g 246 (332)
++............ .....+.++++++|| .||++... ...+..++..+++... .+.....+
T Consensus 71 t~~~~~~~~~~~~~~----~~~~~~~~v~~s~DG~~l~v~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~-~~~~~~~~- 144 (346)
T d1jmxb_ 71 TCKNTFHANLSSVPG----EVGRSMYSFAISPDGKEVYATVNPTQRLNDHYVVKPPRLEVFSTADGLEAK-PVRTFPMP- 144 (346)
T ss_dssp TTEEEEEEESCCSTT----EEEECSSCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEEGGGGGGBC-CSEEEECC-
T ss_pred cCeeeeeeccccccc----ccCCceEEEEEecCCCEEEEEecCCcceeeeeccCcceEEEEecccceeee-EEEeeecc-
Confidence 44433222111110 112357899999999 99998753 3445556655442100 11111111
Q ss_pred CCCCCCCeEEEeCCCeEEEEeCCceEEEEcCCC
Q 020019 247 GPLSFGDGLELLSPTKLVVAGNPSARLVESSDG 279 (332)
Q Consensus 247 ~~~~~pdGi~~~~dG~l~va~~~~~~~v~~~dg 279 (332)
.....+...+++++|+++.. ..++...++
T Consensus 145 ---~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~ 173 (346)
T d1jmxb_ 145 ---RQVYLMRAADDGSLYVAGPD-IYKMDVKTG 173 (346)
T ss_dssp ---SSCCCEEECTTSCEEEESSS-EEEECTTTC
T ss_pred ---CceEEEEecCCCEEEEeCCc-ceEEEccCC
Confidence 23445667788889988754 333455555
|
| >d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase species: Pseudomonas aeruginosa [TaxId: 287]
Probab=98.96 E-value=1.9e-07 Score=85.77 Aligned_cols=208 Identities=16% Similarity=0.042 Sum_probs=128.3
Q ss_pred ccccceEEcCCC-CEEEEE-ecCCeEEEEECCCCCCCccceeeeEEecccCcCCCccceEEEeCCCCeEEEEEeCcCCCc
Q 020019 45 FFRECAKWDDSG-RRFIVS-FLDGGIGQVAVPDDYPPGTVLEEVTLVKDLELTGNGSLGLVLDHPRNRLLVVAADVFGNK 122 (332)
Q Consensus 45 ~~pegia~d~~g-~~~~~~-~~~g~I~~vd~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~vd~~~g~l~v~~~~~~~~~ 122 (332)
..|..+.++.+. +++++. ..+|+|..||..+++. +. ++. .+..|.+++++||..+||++..
T Consensus 19 ~~p~~~~~~~d~~~~~~V~~~~dg~v~vwD~~t~~~----~~--~l~-----~g~~~~~vafSPDGk~l~~~~~------ 81 (426)
T d1hzua2 19 DRPKKQLNDLDLPNLFSVTLRDAGQIALVDGDSKKI----VK--VID-----TGYAVHISRMSASGRYLLVIGR------ 81 (426)
T ss_dssp GSCSSCCSCCCGGGEEEEEETTTTEEEEEETTTCSE----EE--EEE-----CCSSEEEEEECTTSCEEEEEET------
T ss_pred cCCCcccccCCCCeEEEEEEcCCCEEEEEECCCCcE----EE--EEe-----CCCCeeEEEECCCCCEEEEEeC------
Confidence 356666666663 455454 6789999999988762 22 232 1236899999998444566543
Q ss_pred cceEEEEECCCCcEEEEEecCCCCCCCCCccceEEC----CCCc-EEEEeCCCCeEEEEcCC-CceEEEecCCCCCC-cc
Q 020019 123 YSAVAAYDLSTWNRLFLTQLSGPSDGKSCADDVTVD----AEGN-AYVTDVTGSKIWKVGVK-GEFLSIISSPLFTP-KE 195 (332)
Q Consensus 123 ~~~l~~~d~~~g~~~~~~~l~~~~~~~~~~ndiavd----~dG~-lyvtd~~~~~I~~v~~~-g~~~~~~~~~~~~~-p~ 195 (332)
.+.+.+||.++++.....++.. ...+.++++. |||+ +|++....+.+..+|.. ++............ ..
T Consensus 82 d~~v~vwd~~t~~~~~~~~i~~----~~~~~~~~~s~~~spDG~~l~v~~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~ 157 (426)
T d1hzua2 82 DARIDMIDLWAKEPTKVAEIKI----GIEARSVESSKFKGYEDRYTIAGAYWPPQFAIMDGETLEPKQIVSTRGMTVDTQ 157 (426)
T ss_dssp TSEEEEEETTSSSCEEEEEEEC----CSEEEEEEECCSTTCTTTEEEEEEEESSEEEEEETTTCCEEEEEECCEECSSSC
T ss_pred CCCEEEEEccCCceeEEEEEeC----CCCCcceEEeeeecCCCCEEEEeecCCCeEEEEcCCccceeEEeeccCCCccce
Confidence 3568899999988655544421 2334555554 6886 78998888888888876 44443322111000 00
Q ss_pred cccCccccCeEEEccCc-eEEEEeCCCCeEEEEeCCCCCCccceeEEEEecCCCCCCCCeEEEeCCCeE-EEEeCC--ce
Q 020019 196 WYKNLVGLNGIVYHPDG-FLIVIHTFSGNLFKIDIVDGVGEGEEIKLIRVAGGPLSFGDGLELLSPTKL-VVAGNP--SA 271 (332)
Q Consensus 196 ~~~~~~~~nGi~~~~dG-~Lyva~~~~~~i~~id~~~~~~~~~~~~~v~~~g~~~~~pdGi~~~~dG~l-~va~~~--~~ 271 (332)
..........++.++|+ .+|++...++++..++...... ..+..+.. ...|.+++++++|+. |++... ..
T Consensus 158 ~~~~~~~~~~i~~s~d~~~~~~~~~~~~~i~~~~~~~~~~--~~~~~~~~----~~~~~~~~~~~~g~~~~~a~~~~~~~ 231 (426)
T d1hzua2 158 TYHPEPRVAAIIASHEHPEFIVNVKETGKVLLVNYKDIDN--LTVTSIGA----APFLADGGWDSSHRYFMTAANNSNKV 231 (426)
T ss_dssp CEESCCCEEEEEECSSSSEEEEEETTTTEEEEEECSSSSS--CEEEEEEC----CSSEEEEEECTTSCEEEEEETTCSEE
T ss_pred eecCCCceeEEEECCCCCEEEEecCCCCeEEEEEeccccc--eeeEEecc----CCccEeeeECCCCcEEEeeeecccce
Confidence 00112234568889999 9999999999998888775521 12222332 256889999999774 555433 23
Q ss_pred EEEEcCCC
Q 020019 272 RLVESSDG 279 (332)
Q Consensus 272 ~~v~~~dg 279 (332)
.++...++
T Consensus 232 ~~~~~~~~ 239 (426)
T d1hzua2 232 AVIDSKDR 239 (426)
T ss_dssp EEEETTTT
T ss_pred eeeecccc
Confidence 44456666
|
| >d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase species: Paracoccus denitrificans [TaxId: 266]
Probab=98.86 E-value=6.4e-07 Score=82.72 Aligned_cols=166 Identities=14% Similarity=0.064 Sum_probs=113.8
Q ss_pred CccccceEEcCCCCEEEEEecCCeEEEEECCCCCCCccceeeeEEecccCcCCCccceEEEe----CCCCeEEEEEeCcC
Q 020019 44 SFFRECAKWDDSGRRFIVSFLDGGIGQVAVPDDYPPGTVLEEVTLVKDLELTGNGSLGLVLD----HPRNRLLVVAADVF 119 (332)
Q Consensus 44 ~~~pegia~d~~g~~~~~~~~~g~I~~vd~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~vd----~~~g~l~v~~~~~~ 119 (332)
+..|++++++|||+.+++...++.|..+|..+++.. ...++. .+..+.++++. +|..+||++...
T Consensus 61 g~~~~~v~fSpDG~~l~~~s~dg~v~~~d~~t~~~~----~~~~i~-----~~~~~~~~~~s~~~SpDG~~l~vs~~~-- 129 (432)
T d1qksa2 61 GYAVHISRLSASGRYLFVIGRDGKVNMIDLWMKEPT----TVAEIK-----IGSEARSIETSKMEGWEDKYAIAGAYW-- 129 (432)
T ss_dssp SSCEEEEEECTTSCEEEEEETTSEEEEEETTSSSCC----EEEEEE-----CCSEEEEEEECCSTTCTTTEEEEEEEE--
T ss_pred CCCeeEEEECCCCCEEEEEcCCCCEEEEEeeCCCce----EEEEEe-----cCCCCCCeEEecccCCCCCEEEEEcCC--
Confidence 457999999999998887766899999998766531 100111 11256666664 452356777653
Q ss_pred CCccceEEEEECCCCcEEEEEecCCCC-C-----CCCCccceEECCCCc-EEEEeCCCCeEEEEcCC-CceEEEecCCCC
Q 020019 120 GNKYSAVAAYDLSTWNRLFLTQLSGPS-D-----GKSCADDVTVDAEGN-AYVTDVTGSKIWKVGVK-GEFLSIISSPLF 191 (332)
Q Consensus 120 ~~~~~~l~~~d~~~g~~~~~~~l~~~~-~-----~~~~~ndiavd~dG~-lyvtd~~~~~I~~v~~~-g~~~~~~~~~~~ 191 (332)
.+.+.+||.+++++.......... . .......++++++|. +|++....+.|+.++.. ++......-+
T Consensus 130 ---~~~v~i~d~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~s~dg~~~~vs~~~~~~i~~~d~~~~~~~~~~~i~-- 204 (432)
T d1qksa2 130 ---PPQYVIMDGETLEPKKIQSTRGMTYDEQEYHPEPRVAAILASHYRPEFIVNVKETGKILLVDYTDLNNLKTTEIS-- 204 (432)
T ss_dssp ---TTEEEEEETTTCCEEEEEECCEECTTTCCEESCCCEEEEEECSSSSEEEEEETTTTEEEEEETTCSSEEEEEEEE--
T ss_pred ---CCeEEEEeCccccceeeeccCCccccceeccCCCceeEEEECCCCCEEEEEEccCCeEEEEEccCCCcceEEEEc--
Confidence 456889999999987765432110 0 124556688899985 78888889999999865 3433222111
Q ss_pred CCcccccCccccCeEEEccCc-eEEEEeCCCCeEEEEeCCCC
Q 020019 192 TPKEWYKNLVGLNGIVYHPDG-FLIVIHTFSGNLFKIDIVDG 232 (332)
Q Consensus 192 ~~p~~~~~~~~~nGi~~~~dG-~Lyva~~~~~~i~~id~~~~ 232 (332)
....+.+++++||| ++|++....+.+..++.++.
T Consensus 205 -------~g~~~~~~~~spdg~~~~va~~~~~~v~v~d~~~~ 239 (432)
T d1qksa2 205 -------AERFLHDGGLDGSHRYFITAANARNKLVVIDTKEG 239 (432)
T ss_dssp -------CCSSEEEEEECTTSCEEEEEEGGGTEEEEEETTTT
T ss_pred -------ccCccccceECCCCCEEEEeccccceEEEeecccc
Confidence 12357899999999 89999999999999998865
|
| >d1qnia2 b.69.3.1 (A:10-450) Nitrous oxide reductase, N-terminal domain {Pseudomonas nautica [TaxId: 2743]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Nitrous oxide reductase, N-terminal domain family: Nitrous oxide reductase, N-terminal domain domain: Nitrous oxide reductase, N-terminal domain species: Pseudomonas nautica [TaxId: 2743]
Probab=98.83 E-value=2.5e-07 Score=85.58 Aligned_cols=207 Identities=14% Similarity=0.054 Sum_probs=126.2
Q ss_pred cccceEE--cCCCCEEEEE-ecCCeEEEEECCCCCCCccceeeeEEecccCcCCCccceEEEeCCCCeEEEEEeCcCC--
Q 020019 46 FRECAKW--DDSGRRFIVS-FLDGGIGQVAVPDDYPPGTVLEEVTLVKDLELTGNGSLGLVLDHPRNRLLVVAADVFG-- 120 (332)
Q Consensus 46 ~pegia~--d~~g~~~~~~-~~~g~I~~vd~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~vd~~~g~l~v~~~~~~~-- 120 (332)
+|+.... .+||+.+|++ ..+++|.+||+++.+. . ..+.-|. +.+|.|+++.++..++||+......
T Consensus 71 hP~~s~t~gtpDGr~lfV~d~~~~rVavIDl~t~k~-----~--~ii~iP~--g~gphgi~~spdg~t~YV~~~~~~~v~ 141 (441)
T d1qnia2 71 HPHISMTDGRYDGKYLFINDKANTRVARIRLDIMKT-----D--KITHIPN--VQAIHGLRLQKVPKTNYVFCNAEFVIP 141 (441)
T ss_dssp CCEEEEETTEEEEEEEEEEETTTTEEEEEETTTTEE-----E--EEEECTT--CCCEEEEEECCSSBCCEEEEEECSCEE
T ss_pred CCCcceecccCCCCEEEEEcCCCCEEEEEECCCCcE-----e--eEEecCC--CCCccceEEeccCCEEEEEeccCCccc
Confidence 4544333 4788866555 7789999999987752 1 2332232 2489999999875668888754221
Q ss_pred -----------CccceEEEEECCCCcEEEEEecCCCCCCCCCccceEECCCCc-EEEEeCCCCeEEEEc-----------
Q 020019 121 -----------NKYSAVAAYDLSTWNRLFLTQLSGPSDGKSCADDVTVDAEGN-AYVTDVTGSKIWKVG----------- 177 (332)
Q Consensus 121 -----------~~~~~l~~~d~~~g~~~~~~~l~~~~~~~~~~ndiavd~dG~-lyvtd~~~~~I~~v~----------- 177 (332)
.....+..+|.++.++...+... ..|.+++++++|. +|++......+..++
T Consensus 142 ~~~dg~~~~~~~~~~~~~~iD~~t~~v~~qI~v~------~~p~~v~~spdGk~a~vt~~nse~~~~id~~t~~~~d~i~ 215 (441)
T d1qnia2 142 QPNDGTDFSLDNSYTMFTAIDAETMDVAWQVIVD------GNLDNTDADYTGKYATSTCYNSERAVDLAGTMRNDRDWVV 215 (441)
T ss_dssp SSCSSSCCCGGGEEEEEEEEETTTCSEEEEEEES------SCCCCEEECSSSSEEEEEESCTTCCSSHHHHTCSSBCEEE
T ss_pred ccCcccccccccccceEEeecCccceeeEEEecC------CCccceEECCCCCEEEEEecCCCceEEEeccCcceEEEEE
Confidence 11234556899888887666552 4688999999986 888876533222111
Q ss_pred -----------CCCceEEE--------ecCCCCCCcccccCccccCeEEEccCc-eEEEEeCCCCeEEEEeCCCC-----
Q 020019 178 -----------VKGEFLSI--------ISSPLFTPKEWYKNLVGLNGIVYHPDG-FLIVIHTFSGNLFKIDIVDG----- 232 (332)
Q Consensus 178 -----------~~g~~~~~--------~~~~~~~~p~~~~~~~~~nGi~~~~dG-~Lyva~~~~~~i~~id~~~~----- 232 (332)
++|+.... ........-..++....|.|+.++||| ++|+++..++.|..||.++-
T Consensus 216 v~n~p~~~~~~~dGk~~~v~~~~v~vvd~~~~~~v~~~IPvgksPhGv~vSPDGkyl~~~~~~~~tvsv~d~~k~~~~~~ 295 (441)
T d1qnia2 216 VFNVERIAAAVKAGNFKTIGDSKVPVVDGRGESEFTRYIPVPKNPHGLNTSPDGKYFIANGKLSPTVSVIAIDKLDDLFE 295 (441)
T ss_dssp EEEHHHHHHHHHTTCCBCCTTCCCCEEECSSSCSSEEEECCBSSCCCEEECTTSCEEEEECTTSSBEEEEEGGGHHHHTT
T ss_pred eCCccceEEEecCCCEEEeCCCCcEEEEcccCCceEEEEeCCCCccCceECCCCCEEEEeCCcCCcEEEEEeehhhhHhh
Confidence 22222111 000000000123455679999999999 99999999999999997631
Q ss_pred -CCccceeEEEEecCCCCCCCCeEEEeCCCeEEEEeCC
Q 020019 233 -VGEGEEIKLIRVAGGPLSFGDGLELLSPTKLVVAGNP 269 (332)
Q Consensus 233 -~~~~~~~~~v~~~g~~~~~pdGi~~~~dG~l~va~~~ 269 (332)
+.. ....+....+..-+|-..++|++|+.|.+..-
T Consensus 296 ~~~~--~~~~~~~~~~~glgplh~~fd~~g~~yts~~~ 331 (441)
T d1qnia2 296 DKIE--LRDTIVAEPELGLGPLHTTFDGRGNAYTTLFI 331 (441)
T ss_dssp TSSC--GGGGEEECCBCCSCEEEEEECSSSEEEEEETT
T ss_pred ccCC--cceEEEeecccccCcccceecCCceEEEcccc
Confidence 111 01111111011135667799999999999643
|
| >d2madh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Methylamine dehydrogenase, H-chain domain: Methylamine dehydrogenase, H-chain species: Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]
Probab=98.76 E-value=5.3e-06 Score=73.45 Aligned_cols=225 Identities=9% Similarity=-0.025 Sum_probs=122.1
Q ss_pred cccceEEcCCCCEEEEE-e-cCCeEEEEECCCCCCCccceeeeEEecccCcCCCccceEEEeCCCCeEEEEEeCcCCCcc
Q 020019 46 FRECAKWDDSGRRFIVS-F-LDGGIGQVAVPDDYPPGTVLEEVTLVKDLELTGNGSLGLVLDHPRNRLLVVAADVFGNKY 123 (332)
Q Consensus 46 ~pegia~d~~g~~~~~~-~-~~g~I~~vd~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~vd~~~g~l~v~~~~~~~~~~ 123 (332)
.|.+++++++++.++.. . ..+.+..++....+ ..... ..+.++.+.++...+|++... .
T Consensus 126 ~~~~~~~s~dg~~~~v~~~~~~~~~~~~~~~~~~----------~~~~~----~~~~~~~~s~~g~~~~v~~~~-----d 186 (373)
T d2madh_ 126 YSWMNANTPNNADLLFFQFAAGPAVGLVVQGGSS----------DDQLL----SSPTCYHIHPGAPSTFYLLCA-----Q 186 (373)
T ss_pred CCCcEEEEeCCCcEEEEEEcCCCceEEeeccCCe----------EEEEe----ccceeEEEecCCCcEEEEEcC-----C
Confidence 56788888888755443 2 23456666654332 11111 145678888874456776542 4
Q ss_pred ceEEEEECCCCcEEEEEecCC-CCCCCCCccceEECCCCcEEEEeCCCCeEEEEcCCCceEE-Ee--cCCCCCCcccccC
Q 020019 124 SAVAAYDLSTWNRLFLTQLSG-PSDGKSCADDVTVDAEGNAYVTDVTGSKIWKVGVKGEFLS-II--SSPLFTPKEWYKN 199 (332)
Q Consensus 124 ~~l~~~d~~~g~~~~~~~l~~-~~~~~~~~ndiavd~dG~lyvtd~~~~~I~~v~~~g~~~~-~~--~~~~~~~p~~~~~ 199 (332)
+.+.+||..+++......... +......+..+..++++ .++.....+.++.++..+.... .. .............
T Consensus 187 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 265 (373)
T d2madh_ 187 GGLAKTDHAGGAAGAGLVGAMLTAAQNLLTQPAQANKSG-RIVWPVYSGKILQADISAAGATNKAPIDALSGGRKADTWR 265 (373)
T ss_pred CeEEEEEcCCceeeEEEeeeccccCccceeeeEEECCCc-eEEEecCCceEEEEEcCCCeEEEEEeeccccCcEEeeeec
Confidence 578889988876654432211 11112344455566655 3444445566666665532111 11 0000000000001
Q ss_pred ccccCeEEEccCc-eEEEEe---------CCCCeEEEEeCCCCCCccceeEEEEecCCCCCCCCeEEEeCCCe--EEEEe
Q 020019 200 LVGLNGIVYHPDG-FLIVIH---------TFSGNLFKIDIVDGVGEGEEIKLIRVAGGPLSFGDGLELLSPTK--LVVAG 267 (332)
Q Consensus 200 ~~~~nGi~~~~dG-~Lyva~---------~~~~~i~~id~~~~~~~~~~~~~v~~~g~~~~~pdGi~~~~dG~--l~va~ 267 (332)
......+++++|+ .+|++. ...+.+..+|..+++ .+..+... ..|.++++.+||+ ||+++
T Consensus 266 ~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~v~~~d~~t~~----~~~~~~~~----~~~~~~a~spDG~~~l~vt~ 337 (373)
T d2madh_ 266 PGGWQQVAYLKSSDGIYLLTSEQSAWKLHAAAKEVTSVTGLVGQ----TSSQISLG----HDVDAISVAQDGGPDLYALS 337 (373)
T ss_pred cCcceeeEEecCCCeEEEecCCCceEEeecCCCeEEEEECCCCc----EEEEecCC----CCeeEEEECCCCCEEEEEEe
Confidence 1234566777777 666543 345667788887762 45444432 4688999999987 67775
Q ss_pred CC--ceEEEEcCCCceEEEEEeeecCCCcccceEEEEE
Q 020019 268 NP--SARLVESSDGWETAAVVAKFSGPVHRLATAATVK 303 (332)
Q Consensus 268 ~~--~~~~v~~~dg~~~~~~~~~~~~~~~~~pt~va~~ 303 (332)
.. ...+....+| +++..+... ...|+.+++.
T Consensus 338 ~~d~~v~v~D~~tg----~~~~~~~~~-g~~P~~l~~~ 370 (373)
T d2madh_ 338 AGTEVLHIYDAGAG----DQDQSTVEL-GSGPQVLSVM 370 (373)
T ss_pred CCCCeEEEEECCCC----CEEEEECCC-CCCCcEEEEe
Confidence 33 3455566667 455554422 4678999883
|
| >d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Groucho/tle1, C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.75 E-value=1.9e-05 Score=69.19 Aligned_cols=220 Identities=12% Similarity=0.100 Sum_probs=133.7
Q ss_pred ccceEEcCCCCEEEEEecCCeEEEEECCCCCCCccceeeeEEecccCcCCCccceEEEeCCCCeEEEEEeCcCCCccceE
Q 020019 47 RECAKWDDSGRRFIVSFLDGGIGQVAVPDDYPPGTVLEEVTLVKDLELTGNGSLGLVLDHPRNRLLVVAADVFGNKYSAV 126 (332)
Q Consensus 47 pegia~d~~g~~~~~~~~~g~I~~vd~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~vd~~~g~l~v~~~~~~~~~~~~l 126 (332)
..++++.++|+.+++...++.|..++....... .. ..+. . .......+.++++ +.++++... ...+
T Consensus 100 I~~v~~s~dg~~l~s~~~dg~i~iwd~~~~~~~---~~-~~~~---~-~~~~v~~~~~~~~-~~~l~s~~~-----d~~i 165 (337)
T d1gxra_ 100 IRSCKLLPDGCTLIVGGEASTLSIWDLAAPTPR---IK-AELT---S-SAPACYALAISPD-SKVCFSCCS-----DGNI 165 (337)
T ss_dssp EEEEEECTTSSEEEEEESSSEEEEEECCCC--E---EE-EEEE---C-SSSCEEEEEECTT-SSEEEEEET-----TSCE
T ss_pred EEEEEEcCCCCEEEEeecccccccccccccccc---cc-cccc---c-ccccccccccccc-ccccccccc-----cccc
Confidence 457899999998887777899999987644320 01 0111 1 1124567888886 554444332 3468
Q ss_pred EEEECCCCcEEEEEecCCCCCCCCCccceEECCCCcEEEEeCCCCeEEEEcCC-CceEEEecCCCCCCcccccCccccCe
Q 020019 127 AAYDLSTWNRLFLTQLSGPSDGKSCADDVTVDAEGNAYVTDVTGSKIWKVGVK-GEFLSIISSPLFTPKEWYKNLVGLNG 205 (332)
Q Consensus 127 ~~~d~~~g~~~~~~~l~~~~~~~~~~ndiavd~dG~lyvtd~~~~~I~~v~~~-g~~~~~~~~~~~~~p~~~~~~~~~nG 205 (332)
..||.++++....... .......+++.++|+.+++-...+.|..++.. ++........ .....
T Consensus 166 ~~~~~~~~~~~~~~~~-----~~~~v~~l~~s~~~~~~~~~~~d~~v~i~d~~~~~~~~~~~~~-----------~~i~~ 229 (337)
T d1gxra_ 166 AVWDLHNQTLVRQFQG-----HTDGASCIDISNDGTKLWTGGLDNTVRSWDLREGRQLQQHDFT-----------SQIFS 229 (337)
T ss_dssp EEEETTTTEEEEEECC-----CSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECS-----------SCEEE
T ss_pred cccccccccccccccc-----cccccccccccccccccccccccccccccccccceeecccccc-----------cceEE
Confidence 8999988776543321 12456778999999877776777888888865 4544333221 23568
Q ss_pred EEEccCceEEEEeCCCCeEEEEeCCCCCCccceeEEEEecCCCCCCCCeEEEeCCCeEEEEeC--CceEEEEcCCCceEE
Q 020019 206 IVYHPDGFLIVIHTFSGNLFKIDIVDGVGEGEEIKLIRVAGGPLSFGDGLELLSPTKLVVAGN--PSARLVESSDGWETA 283 (332)
Q Consensus 206 i~~~~dG~Lyva~~~~~~i~~id~~~~~~~~~~~~~v~~~g~~~~~pdGi~~~~dG~l~va~~--~~~~~v~~~dg~~~~ 283 (332)
+++++++.+.++-..++.|..++...+. ... ... .......+++.++|+++++.. +..++.....+...
T Consensus 230 l~~~~~~~~l~~~~~d~~i~i~d~~~~~----~~~-~~~---~~~~i~~v~~s~~g~~l~s~s~Dg~i~iwd~~~~~~~- 300 (337)
T d1gxra_ 230 LGYCPTGEWLAVGMESSNVEVLHVNKPD----KYQ-LHL---HESCVLSLKFAYCGKWFVSTGKDNLLNAWRTPYGASI- 300 (337)
T ss_dssp EEECTTSSEEEEEETTSCEEEEETTSSC----EEE-ECC---CSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEE-
T ss_pred EEEcccccccceeccccccccccccccc----ccc-ccc---cccccceEEECCCCCEEEEEeCCCeEEEEECCCCCEE-
Confidence 9999999444444567788888988652 222 211 223456889999998777753 23344455666222
Q ss_pred EEEeeecCCCcccceEEEE-ECCeEEEE
Q 020019 284 AVVAKFSGPVHRLATAATV-KDGRVYLN 310 (332)
Q Consensus 284 ~~~~~~~~~~~~~pt~va~-~~g~lyv~ 310 (332)
..... ....+++++ .++++.++
T Consensus 301 ---~~~~~--~~~v~~~~~s~d~~~l~t 323 (337)
T d1gxra_ 301 ---FQSKE--SSSVLSCDISVDDKYIVT 323 (337)
T ss_dssp ---EEEEC--SSCEEEEEECTTSCEEEE
T ss_pred ---EEccC--CCCEEEEEEeCCCCEEEE
Confidence 11211 233567888 56655554
|
| >d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Arp2/3 complex 41 kDa subunit ARPC1 species: Cow (Bos taurus) [TaxId: 9913]
Probab=98.70 E-value=1.5e-05 Score=70.97 Aligned_cols=231 Identities=9% Similarity=0.046 Sum_probs=129.5
Q ss_pred cceEEcCCCCEEEEEecCCeEEEEECCCCCCCccceeeeEEecccCcCC-CccceEEEeCCCCeEEEEEeCcCCCccceE
Q 020019 48 ECAKWDDSGRRFIVSFLDGGIGQVAVPDDYPPGTVLEEVTLVKDLELTG-NGSLGLVLDHPRNRLLVVAADVFGNKYSAV 126 (332)
Q Consensus 48 egia~d~~g~~~~~~~~~g~I~~vd~~~~~~~~~~~~~~~~~~~~~~~~-~~~~gi~vd~~~g~l~v~~~~~~~~~~~~l 126 (332)
.+++|+++|+++++...++.|..++..+++. +....+. .+ .....|+++|+ ++++++... .+.+
T Consensus 11 t~~~~s~dg~~la~~~~~~~i~iw~~~~~~~-----~~~~~l~----gH~~~V~~l~fsp~-~~~l~s~s~-----D~~i 75 (371)
T d1k8kc_ 11 SCHAWNKDRTQIAICPNNHEVHIYEKSGNKW-----VQVHELK----EHNGQVTGVDWAPD-SNRIVTCGT-----DRNA 75 (371)
T ss_dssp CEEEECTTSSEEEEECSSSEEEEEEEETTEE-----EEEEEEE----CCSSCEEEEEEETT-TTEEEEEET-----TSCE
T ss_pred EEEEECCCCCEEEEEeCCCEEEEEECCCCCE-----EEEEEec----CCCCCEEEEEECCC-CCEEEEEEC-----CCeE
Confidence 5789999999887777788888888765542 1111111 11 25689999997 554443321 3468
Q ss_pred EEEECCCCcEEEEEecCCCCCCCCCccceEECCCCcEEEEeCCCCe--EEEEcCCCceEEEecCCCCCCcccccCccccC
Q 020019 127 AAYDLSTWNRLFLTQLSGPSDGKSCADDVTVDAEGNAYVTDVTGSK--IWKVGVKGEFLSIISSPLFTPKEWYKNLVGLN 204 (332)
Q Consensus 127 ~~~d~~~g~~~~~~~l~~~~~~~~~~ndiavd~dG~lyvtd~~~~~--I~~v~~~g~~~~~~~~~~~~~p~~~~~~~~~n 204 (332)
.+||+++++......+.. .......++++|+|+.+++-+..+. |+.++.............. ......
T Consensus 76 ~vWd~~~~~~~~~~~~~~---~~~~v~~i~~~p~~~~l~~~s~d~~i~i~~~~~~~~~~~~~~~~~~-------~~~~v~ 145 (371)
T d1k8kc_ 76 YVWTLKGRTWKPTLVILR---INRAARCVRWAPNEKKFAVGSGSRVISICYFEQENDWWVCKHIKKP-------IRSTVL 145 (371)
T ss_dssp EEEEEETTEEEEEEECCC---CSSCEEEEEECTTSSEEEEEETTSSEEEEEEETTTTEEEEEEECTT-------CCSCEE
T ss_pred EEEeeccccccccccccc---ccccccccccccccccceeecccCcceeeeeecccccccccccccc-------cccccc
Confidence 889998777665555532 1345778999999987776666664 4555544332221110000 112346
Q ss_pred eEEEccCceEEEEeCCCCeEEEEeCCCCCCccc------------eeEEEEecCCCCCCCCeEEEeCCCeEEEEe-C-Cc
Q 020019 205 GIVYHPDGFLIVIHTFSGNLFKIDIVDGVGEGE------------EIKLIRVAGGPLSFGDGLELLSPTKLVVAG-N-PS 270 (332)
Q Consensus 205 Gi~~~~dG~Lyva~~~~~~i~~id~~~~~~~~~------------~~~~v~~~g~~~~~pdGi~~~~dG~l~va~-~-~~ 270 (332)
.++++|||.++++-...+.|..++......... ........ .......++++.++|+.+++. . ..
T Consensus 146 ~v~~~p~~~~l~s~s~D~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~v~~~~~s~~g~~l~s~~~d~~ 224 (371)
T d1k8kc_ 146 SLDWHPNSVLLAAGSCDFKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESS-SSCGWVHGVCFSANGSRVAWVSHDST 224 (371)
T ss_dssp EEEECTTSSEEEEEETTSCEEEEECCCTTTSCCCCCBTTBSCCCTTCEEEECC-CCSSCEEEEEECSSSSEEEEEETTTE
T ss_pred cccccccccceeccccCcEEEEEeeccCccccccccccccccccceeeeeecc-CccCcEEEEEeecccccccccccCCc
Confidence 799999995555555667776666653211000 00111111 122345688999998876664 3 33
Q ss_pred eEEEEcCCCceEEEEEeeecCCCcccc-eEEEE-ECCeEEEE
Q 020019 271 ARLVESSDGWETAAVVAKFSGPVHRLA-TAATV-KDGRVYLN 310 (332)
Q Consensus 271 ~~~v~~~dg~~~~~~~~~~~~~~~~~p-t~va~-~~g~lyv~ 310 (332)
..+-....+....+ +.. ...| +++++ .++++.++
T Consensus 225 i~iwd~~~~~~~~~----~~~--~~~~v~s~~fs~d~~~la~ 260 (371)
T d1k8kc_ 225 VCLADADKKMAVAT----LAS--ETLPLLAVTFITESSLVAA 260 (371)
T ss_dssp EEEEEGGGTTEEEE----EEC--SSCCEEEEEEEETTEEEEE
T ss_pred ceEEeeecccceee----eec--ccccceeeeecCCCCEEEE
Confidence 33334444522222 221 1222 56777 67766654
|
| >d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Probab=98.69 E-value=1.5e-05 Score=69.49 Aligned_cols=232 Identities=11% Similarity=0.039 Sum_probs=136.7
Q ss_pred cccceEEcCCCCEEEEEecCCeEEEEECCCCCCCccceeeeEEecccCcCCCccceEEEeCCCCeEEEEEeCcCCCccce
Q 020019 46 FRECAKWDDSGRRFIVSFLDGGIGQVAVPDDYPPGTVLEEVTLVKDLELTGNGSLGLVLDHPRNRLLVVAADVFGNKYSA 125 (332)
Q Consensus 46 ~pegia~d~~g~~~~~~~~~g~I~~vd~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~vd~~~g~l~v~~~~~~~~~~~~ 125 (332)
....++++|+|+++++...+|.|..++..+++.. .. ..+... ......++++++ ++++++.... ....
T Consensus 60 ~v~~~~~sp~g~~latg~~dg~i~iwd~~~~~~~---~~-~~~~~~----~~~v~~v~~s~d-~~~l~~~~~~---~~~~ 127 (311)
T d1nr0a1 60 QTTVAKTSPSGYYCASGDVHGNVRIWDTTQTTHI---LK-TTIPVF----SGPVKDISWDSE-SKRIAAVGEG---RERF 127 (311)
T ss_dssp CEEEEEECTTSSEEEEEETTSEEEEEESSSTTCC---EE-EEEECS----SSCEEEEEECTT-SCEEEEEECC---SSCS
T ss_pred CEEEEEEeCCCCeEeccccCceEeeeeeeccccc---cc-cccccc----cCcccccccccc-cccccccccc---cccc
Confidence 4467889999998877777899999998766531 11 122111 125688999997 6655554321 1233
Q ss_pred EEEEECCCCcEEEEEecCCCCCCCCCccceEECCCCc-EEEEeCCCCeEEEEcCCC-ceEEEecCCCCCCcccccCcccc
Q 020019 126 VAAYDLSTWNRLFLTQLSGPSDGKSCADDVTVDAEGN-AYVTDVTGSKIWKVGVKG-EFLSIISSPLFTPKEWYKNLVGL 203 (332)
Q Consensus 126 l~~~d~~~g~~~~~~~l~~~~~~~~~~ndiavd~dG~-lyvtd~~~~~I~~v~~~g-~~~~~~~~~~~~~p~~~~~~~~~ 203 (332)
+.+|+.++++... .+.+ .....+.+++.|+|+ ++++-+..+.|..++... +........ ....
T Consensus 128 ~~v~~~~~~~~~~--~l~~---h~~~v~~v~~~~~~~~~l~sgs~d~~i~i~d~~~~~~~~~~~~~----------~~~i 192 (311)
T d1nr0a1 128 GHVFLFDTGTSNG--NLTG---QARAMNSVDFKPSRPFRIISGSDDNTVAIFEGPPFKFKSTFGEH----------TKFV 192 (311)
T ss_dssp EEEEETTTCCBCB--CCCC---CSSCEEEEEECSSSSCEEEEEETTSCEEEEETTTBEEEEEECCC----------SSCE
T ss_pred ccccccccccccc--cccc---cccccccccccccceeeecccccccccccccccccccccccccc----------cccc
Confidence 5678888776543 2321 124567899999986 677777788888888763 433322211 1235
Q ss_pred CeEEEccCceEEEEeCCCCeEEEEeCCCCCCccceeEEEEecCC----CCCCCCeEEEeCCCeEEEEeCC--ceEEEEcC
Q 020019 204 NGIVYHPDGFLIVIHTFSGNLFKIDIVDGVGEGEEIKLIRVAGG----PLSFGDGLELLSPTKLVVAGNP--SARLVESS 277 (332)
Q Consensus 204 nGi~~~~dG~Lyva~~~~~~i~~id~~~~~~~~~~~~~v~~~g~----~~~~pdGi~~~~dG~l~va~~~--~~~~v~~~ 277 (332)
+.++++|+|.++++-...+.|..++..+++ ....+..... .......+++.++|+++++... ..++-...
T Consensus 193 ~~v~~~p~~~~l~~~~~d~~v~~~d~~~~~----~~~~~~~~~~~~~~h~~~V~~~~~s~~~~~l~tgs~Dg~v~iwd~~ 268 (311)
T d1nr0a1 193 HSVRYNPDGSLFASTGGDGTIVLYNGVDGT----KTGVFEDDSLKNVAHSGSVFGLTWSPDGTKIASASADKTIKIWNVA 268 (311)
T ss_dssp EEEEECTTSSEEEEEETTSCEEEEETTTCC----EEEECBCTTSSSCSSSSCEEEEEECTTSSEEEEEETTSEEEEEETT
T ss_pred cccccCcccccccccccccccccccccccc----ccccccccccccccccccccccccCCCCCEEEEEeCCCeEEEEECC
Confidence 789999999555555567788888888662 3333332110 1123457899999888877632 23433456
Q ss_pred CCceEEEEEeeecCC-Cc-ccceEEEEECCeEEEEEe
Q 020019 278 DGWETAAVVAKFSGP-VH-RLATAATVKDGRVYLNHM 312 (332)
Q Consensus 278 dg~~~~~~~~~~~~~-~~-~~pt~va~~~g~lyv~~~ 312 (332)
++ ++...+... .. ....++.+.++.|+....
T Consensus 269 t~----~~~~~l~~~~~~~~~~~~~~~~~~~l~s~s~ 301 (311)
T d1nr0a1 269 TL----KVEKTIPVGTRIEDQQLGIIWTKQALVSISA 301 (311)
T ss_dssp TT----EEEEEEECCSSGGGCEEEEEECSSCEEEEET
T ss_pred CC----cEEEEEECCCCccceEEEEEecCCEEEEEEC
Confidence 66 333333321 11 112334445666665543
|
| >d1v04a_ b.68.6.2 (A:) Serum paraoxonase/arylesterase 1, PON1 {Rabit (Oryctolagus cuniculus) [TaxId: 9986]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: Serum paraoxonase/arylesterase 1, PON1 domain: Serum paraoxonase/arylesterase 1, PON1 species: Rabit (Oryctolagus cuniculus) [TaxId: 9986]
Probab=98.68 E-value=2.3e-06 Score=76.60 Aligned_cols=198 Identities=15% Similarity=0.153 Sum_probs=113.7
Q ss_pred CccccceEE--cCCCC--EEEEEe-cC-Ce--EEEEECCCCCCCccceeeeEEecccCcCCCccceEEEeCCCCeEEEEE
Q 020019 44 SFFRECAKW--DDSGR--RFIVSF-LD-GG--IGQVAVPDDYPPGTVLEEVTLVKDLELTGNGSLGLVLDHPRNRLLVVA 115 (332)
Q Consensus 44 ~~~pegia~--d~~g~--~~~~~~-~~-g~--I~~vd~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~vd~~~g~l~v~~ 115 (332)
.+.|+|+.+ +.+|+ +|+++- .. .+ |.+++.++.+. ..+.-...|.. ..|+.+++..+ |.+|+++
T Consensus 96 ~f~PhGi~l~~~~dg~~~L~vvnH~~~~~~ieif~~~~~~~~l-----~~~~~v~~~~~--~~pNDv~~~~~-g~fy~Tn 167 (340)
T d1v04a_ 96 SFNPHGISTFIDDDNTVYLLVVNHPGSSSTVEVFKFQEEEKSL-----LHLKTIRHKLL--PSVNDIVAVGP-EHFYATN 167 (340)
T ss_dssp GCCEEEEEEEECTTCCEEEEEEECSTTCCEEEEEEEETTTTEE-----EEEEEECCTTC--SSEEEEEEEET-TEEEEEE
T ss_pred ceeccceeEEEcCCCcEEEEEEeccCCCceeEEEEEeCCCCeE-----EEEeecCCccc--cCccceEEecC-CCEEEec
Confidence 368999876 55665 444442 22 33 56666554331 11112223433 37999999986 8999997
Q ss_pred eCcCC------------CccceEEEEECCCCcEEEEEecCCCCCCCCCccceEECCCCc-EEEEeCCCCeEEEEcCC--C
Q 020019 116 ADVFG------------NKYSAVAAYDLSTWNRLFLTQLSGPSDGKSCADDVTVDAEGN-AYVTDVTGSKIWKVGVK--G 180 (332)
Q Consensus 116 ~~~~~------------~~~~~l~~~d~~~g~~~~~~~l~~~~~~~~~~ndiavd~dG~-lyvtd~~~~~I~~v~~~--g 180 (332)
..... .+.+.++.||.+. ..... .+..+||||++++|++ +||+++..++|++++.+ +
T Consensus 168 d~~~~~~~~~~~e~~~~~~~g~v~~~~~~~--~~~~~------~~l~~pNGI~~s~d~~~lyVa~t~~~~i~~y~~~~~~ 239 (340)
T d1v04a_ 168 DHYFIDPYLKSWEMHLGLAWSFVTYYSPND--VRVVA------EGFDFANGINISPDGKYVYIAELLAHKIHVYEKHANW 239 (340)
T ss_dssp SCSCCSHHHHHHHHHTTCCCEEEEEECSSC--EEEEE------EEESSEEEEEECTTSSEEEEEEGGGTEEEEEEECTTS
T ss_pred CccCcChhhhhhhHhhcCCceeEEEEcCCc--eEEEc------CCCCccceeEECCCCCEEEEEeCCCCeEEEEEeCCCc
Confidence 43221 2345666676643 22111 1247899999999985 99999999999887654 3
Q ss_pred ceEEEecCCCCCCcccccCccccCeEEEcc-CceEEEEeCCC--------------CeEEEEeCCCCCCccceeEEEEec
Q 020019 181 EFLSIISSPLFTPKEWYKNLVGLNGIVYHP-DGFLIVIHTFS--------------GNLFKIDIVDGVGEGEEIKLIRVA 245 (332)
Q Consensus 181 ~~~~~~~~~~~~~p~~~~~~~~~nGi~~~~-dG~Lyva~~~~--------------~~i~~id~~~~~~~~~~~~~v~~~ 245 (332)
+........ + ...|++|.+++ +|.+|++.... ..++|+....... .+..+.+...
T Consensus 240 ~l~~~~~~~-l--------~~~pDNi~~d~~~g~lwva~~p~~~~~~~~~~~~~~~s~v~ri~~~~~~~-~~v~~~~~~~ 309 (340)
T d1v04a_ 240 TLTPLRVLS-F--------DTLVDNISVDPVTGDLWVGCHPNGMRIFFYDAENPPGSEVLRIQDILSEE-PKVTVVYAEN 309 (340)
T ss_dssp CEEEEEEEE-C--------SSEEEEEEECTTTCCEEEEEESCHHHHHSCCTTSCCCEEEEEEECTTSSS-CEEEEEEEEC
T ss_pred ccceEEEec-C--------CCCCCccEEecCCCEEEEEECCcccchhhhcccCCCCceeEEEEeccCCC-CeEEEEEeCC
Confidence 322211111 1 24588999986 56999986531 2356765322110 1223333444
Q ss_pred CCCCCCCCeEEEeCCCeEEEEeC
Q 020019 246 GGPLSFGDGLELLSPTKLVVAGN 268 (332)
Q Consensus 246 g~~~~~pdGi~~~~dG~l~va~~ 268 (332)
|+.+.... .++.-+|+||+..-
T Consensus 310 G~~~~~~T-~a~~~~g~L~iGs~ 331 (340)
T d1v04a_ 310 GTVLQGST-VAAVYKGKLLIGTV 331 (340)
T ss_dssp SSSSCSEE-EEEEETTEEEEEES
T ss_pred CcEeeceE-EEEEECCEEEEEee
Confidence 44444433 33445789999864
|
| >d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Groucho/tle1, C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.65 E-value=5.5e-05 Score=66.05 Aligned_cols=202 Identities=11% Similarity=0.097 Sum_probs=122.3
Q ss_pred CccccceEEcCCCCEEEEEecCCeEEEEECCCCCCCccceeeeEEecccCcCCCccceEEEeCCCCeEEEEEeCcCCCcc
Q 020019 44 SFFRECAKWDDSGRRFIVSFLDGGIGQVAVPDDYPPGTVLEEVTLVKDLELTGNGSLGLVLDHPRNRLLVVAADVFGNKY 123 (332)
Q Consensus 44 ~~~pegia~d~~g~~~~~~~~~g~I~~vd~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~vd~~~g~l~v~~~~~~~~~~ 123 (332)
......++++++|+.+++.. +|.|..+|..+..... .. ......+ -......+++.++ ++.+++... .
T Consensus 51 ~~~V~~v~fs~~g~~latg~-dg~V~iWd~~~~~~~~-~~---~~~~~~~-h~~~I~~v~~s~d-g~~l~s~~~-----d 118 (337)
T d1gxra_ 51 GEVVCAVTISNPTRHVYTGG-KGCVKVWDISHPGNKS-PV---SQLDCLN-RDNYIRSCKLLPD-GCTLIVGGE-----A 118 (337)
T ss_dssp SSCCCEEEECSSSSEEEEEC-BSEEEEEETTSTTCCS-CS---EEEECSC-TTSBEEEEEECTT-SSEEEEEES-----S
T ss_pred CCcEEEEEECCCCCEEEEEE-CCEEEEEEccCCcccc-ee---EEeeecC-CCCcEEEEEEcCC-CCEEEEeec-----c
Confidence 33557799999999777665 6889999876543210 01 1111111 0124678999997 664444331 3
Q ss_pred ceEEEEECCCCcEEEEEecCCCCCCCCCccceEECCCCcEEEEeCCCCeEEEEcCCC-ceEEEecCCCCCCcccccCccc
Q 020019 124 SAVAAYDLSTWNRLFLTQLSGPSDGKSCADDVTVDAEGNAYVTDVTGSKIWKVGVKG-EFLSIISSPLFTPKEWYKNLVG 202 (332)
Q Consensus 124 ~~l~~~d~~~g~~~~~~~l~~~~~~~~~~ndiavd~dG~lyvtd~~~~~I~~v~~~g-~~~~~~~~~~~~~p~~~~~~~~ 202 (332)
+.|..||....+......+.. .......+++.+++.++++.+..+.|..++... +....... ....
T Consensus 119 g~i~iwd~~~~~~~~~~~~~~---~~~~v~~~~~~~~~~~l~s~~~d~~i~~~~~~~~~~~~~~~~----------~~~~ 185 (337)
T d1gxra_ 119 STLSIWDLAAPTPRIKAELTS---SAPACYALAISPDSKVCFSCCSDGNIAVWDLHNQTLVRQFQG----------HTDG 185 (337)
T ss_dssp SEEEEEECCCC--EEEEEEEC---SSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECC----------CSSC
T ss_pred ccccccccccccccccccccc---cccccccccccccccccccccccccccccccccccccccccc----------cccc
Confidence 578899987655443334421 124456788999998888888888888888664 33322211 1123
Q ss_pred cCeEEEccCc-eEEEEeCCCCeEEEEeCCCCCCccceeEEEEecCCCCCCCCeEEEeCCCeEEEEe-C-CceEEEEcCCC
Q 020019 203 LNGIVYHPDG-FLIVIHTFSGNLFKIDIVDGVGEGEEIKLIRVAGGPLSFGDGLELLSPTKLVVAG-N-PSARLVESSDG 279 (332)
Q Consensus 203 ~nGi~~~~dG-~Lyva~~~~~~i~~id~~~~~~~~~~~~~v~~~g~~~~~pdGi~~~~dG~l~va~-~-~~~~~v~~~dg 279 (332)
...+++++++ .++++ ...+.|..+++.++ +.+...... .....++++++++++++. . ....+.....+
T Consensus 186 v~~l~~s~~~~~~~~~-~~d~~v~i~d~~~~----~~~~~~~~~----~~i~~l~~~~~~~~l~~~~~d~~i~i~d~~~~ 256 (337)
T d1gxra_ 186 ASCIDISNDGTKLWTG-GLDNTVRSWDLREG----RQLQQHDFT----SQIFSLGYCPTGEWLAVGMESSNVEVLHVNKP 256 (337)
T ss_dssp EEEEEECTTSSEEEEE-ETTSEEEEEETTTT----EEEEEEECS----SCEEEEEECTTSSEEEEEETTSCEEEEETTSS
T ss_pred cccccccccccccccc-cccccccccccccc----eeecccccc----cceEEEEEcccccccceecccccccccccccc
Confidence 5688999999 55554 55678888898876 244444433 345678889988876664 3 33343344444
|
| >d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase species: Pseudomonas aeruginosa [TaxId: 287]
Probab=98.61 E-value=6.3e-06 Score=75.18 Aligned_cols=166 Identities=16% Similarity=0.081 Sum_probs=106.7
Q ss_pred CccccceEEcCCCCEEEEEecCCeEEEEECCCCCCCccceeeeEEecccCcCCCccceEEEe----CCCCeEEEEEeCcC
Q 020019 44 SFFRECAKWDDSGRRFIVSFLDGGIGQVAVPDDYPPGTVLEEVTLVKDLELTGNGSLGLVLD----HPRNRLLVVAADVF 119 (332)
Q Consensus 44 ~~~pegia~d~~g~~~~~~~~~g~I~~vd~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~vd----~~~g~l~v~~~~~~ 119 (332)
+..|++++++|||+.+++...++.|..+|..+++. ....++. . +.++.++.++ ++..+|+++...
T Consensus 61 g~~~~~vafSPDGk~l~~~~~d~~v~vwd~~t~~~----~~~~~i~--~---~~~~~~~~~s~~~spDG~~l~v~~~~-- 129 (426)
T d1hzua2 61 GYAVHISRMSASGRYLLVIGRDARIDMIDLWAKEP----TKVAEIK--I---GIEARSVESSKFKGYEDRYTIAGAYW-- 129 (426)
T ss_dssp CSSEEEEEECTTSCEEEEEETTSEEEEEETTSSSC----EEEEEEE--C---CSEEEEEEECCSTTCTTTEEEEEEEE--
T ss_pred CCCeeEEEECCCCCEEEEEeCCCCEEEEEccCCce----eEEEEEe--C---CCCCcceEEeeeecCCCCEEEEeecC--
Confidence 45789999999999888776689999999887763 1100111 1 1245566655 453456776643
Q ss_pred CCccceEEEEECCCCcEEEEEecCCC-CC-----CCCCccceEECCCCc-EEEEeCCCCeEEEEcCC-CceEEEecCCCC
Q 020019 120 GNKYSAVAAYDLSTWNRLFLTQLSGP-SD-----GKSCADDVTVDAEGN-AYVTDVTGSKIWKVGVK-GEFLSIISSPLF 191 (332)
Q Consensus 120 ~~~~~~l~~~d~~~g~~~~~~~l~~~-~~-----~~~~~ndiavd~dG~-lyvtd~~~~~I~~v~~~-g~~~~~~~~~~~ 191 (332)
...+..||.++++.......... .. .......++..+++. ++++....+.|..++.. ++......
T Consensus 130 ---~~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~s~d~~~~~~~~~~~~~i~~~~~~~~~~~~~~~---- 202 (426)
T d1hzua2 130 ---PPQFAIMDGETLEPKQIVSTRGMTVDTQTYHPEPRVAAIIASHEHPEFIVNVKETGKVLLVNYKDIDNLTVTS---- 202 (426)
T ss_dssp ---SSEEEEEETTTCCEEEEEECCEECSSSCCEESCCCEEEEEECSSSSEEEEEETTTTEEEEEECSSSSSCEEEE----
T ss_pred ---CCeEEEEcCCccceeEEeeccCCCccceeecCCCceeEEEECCCCCEEEEecCCCCeEEEEEeccccceeeEE----
Confidence 34678899999887765543210 00 112334566777764 66777777777666543 22111110
Q ss_pred CCcccccCccccCeEEEccCc-eEEEEeCCCCeEEEEeCCCC
Q 020019 192 TPKEWYKNLVGLNGIVYHPDG-FLIVIHTFSGNLFKIDIVDG 232 (332)
Q Consensus 192 ~~p~~~~~~~~~nGi~~~~dG-~Lyva~~~~~~i~~id~~~~ 232 (332)
.+....+.+++++++| ++|++....+.+..++..++
T Consensus 203 -----~~~~~~~~~~~~~~~g~~~~~a~~~~~~~~~~~~~~~ 239 (426)
T d1hzua2 203 -----IGAAPFLADGGWDSSHRYFMTAANNSNKVAVIDSKDR 239 (426)
T ss_dssp -----EECCSSEEEEEECTTSCEEEEEETTCSEEEEEETTTT
T ss_pred -----eccCCccEeeeECCCCcEEEeeeecccceeeeecccc
Confidence 0122457899999999 99999999999999999877
|
| >d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Probab=98.60 E-value=1.8e-05 Score=69.08 Aligned_cols=197 Identities=11% Similarity=0.007 Sum_probs=118.6
Q ss_pred cccceEEcCCCCEEEEEecCCeEEEEECCCCCCCccceeeeEEecccCcCCCccceEEEeCCCCeEEEEEeCcCCCccce
Q 020019 46 FRECAKWDDSGRRFIVSFLDGGIGQVAVPDDYPPGTVLEEVTLVKDLELTGNGSLGLVLDHPRNRLLVVAADVFGNKYSA 125 (332)
Q Consensus 46 ~pegia~d~~g~~~~~~~~~g~I~~vd~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~vd~~~g~l~v~~~~~~~~~~~~ 125 (332)
.|..++++|+|+.++.. .++.|..++..+.+. .. .+.... .....+++.|+ |++.++.. ..+.
T Consensus 19 ~~~~~a~~~~g~~l~~~-~~~~v~i~~~~~~~~----~~--~~~~H~----~~v~~~~~sp~-g~~latg~-----~dg~ 81 (311)
T d1nr0a1 19 TAVVLGNTPAGDKIQYC-NGTSVYTVPVGSLTD----TE--IYTEHS----HQTTVAKTSPS-GYYCASGD-----VHGN 81 (311)
T ss_dssp CCCCCEECTTSSEEEEE-ETTEEEEEETTCSSC----CE--EECCCS----SCEEEEEECTT-SSEEEEEE-----TTSE
T ss_pred CeEEEEEcCCCCEEEEE-eCCEEEEEECCCCce----eE--EEcCCC----CCEEEEEEeCC-CCeEeccc-----cCce
Confidence 45678999999977554 356788998876652 11 222111 25688999997 77554433 2457
Q ss_pred EEEEECCCCcEEEEEecCCCCCCCCCccceEECCCCcEEEEeCC--CCeEEEEcCC-CceEEEecCCCCCCcccccCccc
Q 020019 126 VAAYDLSTWNRLFLTQLSGPSDGKSCADDVTVDAEGNAYVTDVT--GSKIWKVGVK-GEFLSIISSPLFTPKEWYKNLVG 202 (332)
Q Consensus 126 l~~~d~~~g~~~~~~~l~~~~~~~~~~ndiavd~dG~lyvtd~~--~~~I~~v~~~-g~~~~~~~~~~~~~p~~~~~~~~ 202 (332)
|.+||.++++......+... .....++++.++|+.+++-.. ...+...+.+ ++.... +. .....
T Consensus 82 i~iwd~~~~~~~~~~~~~~~---~~~v~~v~~s~d~~~l~~~~~~~~~~~~v~~~~~~~~~~~-----l~-----~h~~~ 148 (311)
T d1nr0a1 82 VRIWDTTQTTHILKTTIPVF---SGPVKDISWDSESKRIAAVGEGRERFGHVFLFDTGTSNGN-----LT-----GQARA 148 (311)
T ss_dssp EEEEESSSTTCCEEEEEECS---SSCEEEEEECTTSCEEEEEECCSSCSEEEEETTTCCBCBC-----CC-----CCSSC
T ss_pred Eeeeeeeccccccccccccc---cCcccccccccccccccccccccccccccccccccccccc-----cc-----ccccc
Confidence 89999988765433334211 245678999999986665432 2223333332 222111 10 01123
Q ss_pred cCeEEEccCc-eEEEEeCCCCeEEEEeCCCCCCccceeEEEEecCCCCCCCCeEEEeCCCeEEEEe-C-CceEEEEcCCC
Q 020019 203 LNGIVYHPDG-FLIVIHTFSGNLFKIDIVDGVGEGEEIKLIRVAGGPLSFGDGLELLSPTKLVVAG-N-PSARLVESSDG 279 (332)
Q Consensus 203 ~nGi~~~~dG-~Lyva~~~~~~i~~id~~~~~~~~~~~~~v~~~g~~~~~pdGi~~~~dG~l~va~-~-~~~~~v~~~dg 279 (332)
.+.++|+|+| .++++-...+.|..++.++++ ....+.. .......++++++|+++++. . +..++....++
T Consensus 149 v~~v~~~~~~~~~l~sgs~d~~i~i~d~~~~~----~~~~~~~---~~~~i~~v~~~p~~~~l~~~~~d~~v~~~d~~~~ 221 (311)
T d1nr0a1 149 MNSVDFKPSRPFRIISGSDDNTVAIFEGPPFK----FKSTFGE---HTKFVHSVRYNPDGSLFASTGGDGTIVLYNGVDG 221 (311)
T ss_dssp EEEEEECSSSSCEEEEEETTSCEEEEETTTBE----EEEEECC---CSSCEEEEEECTTSSEEEEEETTSCEEEEETTTC
T ss_pred cccccccccceeeecccccccccccccccccc----ccccccc---ccccccccccCccccccccccccccccccccccc
Confidence 5789999999 677777778889888988651 2332221 22345688999998877774 3 33344445555
|
| >d1qnia2 b.69.3.1 (A:10-450) Nitrous oxide reductase, N-terminal domain {Pseudomonas nautica [TaxId: 2743]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Nitrous oxide reductase, N-terminal domain family: Nitrous oxide reductase, N-terminal domain domain: Nitrous oxide reductase, N-terminal domain species: Pseudomonas nautica [TaxId: 2743]
Probab=98.57 E-value=3e-08 Score=91.85 Aligned_cols=192 Identities=9% Similarity=-0.004 Sum_probs=112.9
Q ss_pred eCCCCeEEEEEeCcCCCccceEEEEECCCCcEEEEEecCCCCCCCCCccceEECCCCc-EEEEeCCCCeEEEE------c
Q 020019 105 DHPRNRLLVVAADVFGNKYSAVAAYDLSTWNRLFLTQLSGPSDGKSCADDVTVDAEGN-AYVTDVTGSKIWKV------G 177 (332)
Q Consensus 105 d~~~g~l~v~~~~~~~~~~~~l~~~d~~~g~~~~~~~l~~~~~~~~~~ndiavd~dG~-lyvtd~~~~~I~~v------~ 177 (332)
.+|...|||++.. .++|.++|+++++....+.++ . ...|+++++.++|+ +||+......+-.. +
T Consensus 80 tpDGr~lfV~d~~-----~~rVavIDl~t~k~~~ii~iP--~--g~gphgi~~spdg~t~YV~~~~~~~v~~~~dg~~~~ 150 (441)
T d1qnia2 80 RYDGKYLFINDKA-----NTRVARIRLDIMKTDKITHIP--N--VQAIHGLRLQKVPKTNYVFCNAEFVIPQPNDGTDFS 150 (441)
T ss_dssp EEEEEEEEEEETT-----TTEEEEEETTTTEEEEEEECT--T--CCCEEEEEECCSSBCCEEEEEECSCEESSCSSSCCC
T ss_pred cCCCCEEEEEcCC-----CCEEEEEECCCCcEeeEEecC--C--CCCccceEEeccCCEEEEEeccCCcccccCcccccc
Confidence 3542358888763 568999999999888777763 2 46899999999986 79987654443210 0
Q ss_pred CCCceE--EEecCCCCCCcccccCccccCeEEEccCc-eEEEEeCCCCeEEEEeCCCCCCccceeEEEEecCCCCCCCCe
Q 020019 178 VKGEFL--SIISSPLFTPKEWYKNLVGLNGIVYHPDG-FLIVIHTFSGNLFKIDIVDGVGEGEEIKLIRVAGGPLSFGDG 254 (332)
Q Consensus 178 ~~g~~~--~~~~~~~~~~p~~~~~~~~~nGi~~~~dG-~Lyva~~~~~~i~~id~~~~~~~~~~~~~v~~~g~~~~~pdG 254 (332)
.+.+.. ..++...+......+....|.++++++|| ++|++..+++.+..++..+.+ ....+... ..|.+
T Consensus 151 ~~~~~~~~~~iD~~t~~v~~qI~v~~~p~~v~~spdGk~a~vt~~nse~~~~id~~t~~----~~d~i~v~----n~p~~ 222 (441)
T d1qnia2 151 LDNSYTMFTAIDAETMDVAWQVIVDGNLDNTDADYTGKYATSTCYNSERAVDLAGTMRN----DRDWVVVF----NVERI 222 (441)
T ss_dssp GGGEEEEEEEEETTTCSEEEEEEESSCCCCEEECSSSSEEEEEESCTTCCSSHHHHTCS----SBCEEEEE----EHHHH
T ss_pred cccccceEEeecCccceeeEEEecCCCccceEECCCCCEEEEEecCCCceEEEeccCcc----eEEEEEeC----Cccce
Confidence 001111 11111111110011122458899999999 999999998877666665542 23333322 23455
Q ss_pred EEEeCCCeEEEEeCCceEEEEcCCCceEEEEEeeecCCCcccceEEEE--ECCeEEEEEecCcccc
Q 020019 255 LELLSPTKLVVAGNPSARLVESSDGWETAAVVAKFSGPVHRLATAATV--KDGRVYLNHMLGFGYP 318 (332)
Q Consensus 255 i~~~~dG~l~va~~~~~~~v~~~dg~~~~~~~~~~~~~~~~~pt~va~--~~g~lyv~~~~g~~~~ 318 (332)
+++.++|+...........+..... .+++..++. .+.|.++.+ +++.+|+++.....++
T Consensus 223 ~~~~~dGk~~~v~~~~v~vvd~~~~---~~v~~~IPv--gksPhGv~vSPDGkyl~~~~~~~~tvs 283 (441)
T d1qnia2 223 AAAVKAGNFKTIGDSKVPVVDGRGE---SEFTRYIPV--PKNPHGLNTSPDGKYFIANGKLSPTVS 283 (441)
T ss_dssp HHHHHTTCCBCCTTCCCCEEECSSS---CSSEEEECC--BSSCCCEEECTTSCEEEEECTTSSBEE
T ss_pred EEEecCCCEEEeCCCCcEEEEcccC---CceEEEEeC--CCCccCceECCCCCEEEEeCCcCCcEE
Confidence 6666777744333333233333222 124444443 467999999 4566888988887655
|
| >d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Probab=98.54 E-value=7e-06 Score=70.23 Aligned_cols=200 Identities=8% Similarity=0.039 Sum_probs=116.8
Q ss_pred cCCccccceEEcCCCCEEEEEecCCeEEEEECCCCCCCccceeeeEEecccCcCCCccceEEEeCCCCeEEEEEeCcCCC
Q 020019 42 SSSFFRECAKWDDSGRRFIVSFLDGGIGQVAVPDDYPPGTVLEEVTLVKDLELTGNGSLGLVLDHPRNRLLVVAADVFGN 121 (332)
Q Consensus 42 ~~~~~pegia~d~~g~~~~~~~~~g~I~~vd~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~vd~~~g~l~v~~~~~~~~ 121 (332)
+.......++++++|+.+++...++.|..+|..+++. . ... +..-......+++.++ |+++++..+
T Consensus 10 GH~~~V~~l~~s~dg~~l~s~s~Dg~v~vWd~~~~~~-----~--~~~--~~~h~~~v~~v~~~~~-g~~~~~~~d---- 75 (299)
T d1nr0a2 10 GHNKAITALSSSADGKTLFSADAEGHINSWDISTGIS-----N--RVF--PDVHATMITGIKTTSK-GDLFTVSWD---- 75 (299)
T ss_dssp CCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCE-----E--ECS--SCSCSSCEEEEEECTT-SCEEEEETT----
T ss_pred CCCCCcEEEEECCCCCEEEEEcCCCeEEEEECCCCcE-----E--EEE--cCCCCCcEEEEEeecc-ceeecccce----
Confidence 3333556799999999888777789999999877652 1 121 1111124678999996 888877653
Q ss_pred ccceEEEEECCCCcEEEEEecCCCCCCCCCccceEECCCCcEEEEeCCCCeEEEEcCCCceEEEecCCCCCCcccccCcc
Q 020019 122 KYSAVAAYDLSTWNRLFLTQLSGPSDGKSCADDVTVDAEGNAYVTDVTGSKIWKVGVKGEFLSIISSPLFTPKEWYKNLV 201 (332)
Q Consensus 122 ~~~~l~~~d~~~g~~~~~~~l~~~~~~~~~~ndiavd~dG~lyvtd~~~~~I~~v~~~g~~~~~~~~~~~~~p~~~~~~~ 201 (332)
..+..|+............. ......+..+++.++|++.++... +.+..++.. +...... ..
T Consensus 76 --~~v~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~s~~g~~~~~~~~-~~i~~~~~~-~~~~~~~------------~~ 137 (299)
T d1nr0a2 76 --DHLKVVPAGGSGVDSSKAVA--NKLSSQPLGLAVSADGDIAVAACY-KHIAIYSHG-KLTEVPI------------SY 137 (299)
T ss_dssp --TEEEEECSSSSSSCTTSCCE--EECSSCEEEEEECTTSSCEEEEES-SEEEEEETT-EEEEEEC------------SS
T ss_pred --eeEEEeccCCcccccccccc--cccccccccccccccccccccccc-ccccccccc-ccccccc------------cc
Confidence 45777886543221100000 001245677999999986555433 455555533 3222211 11
Q ss_pred ccCeEEEccCceEEEEeCCCCeEEEEeCCCCCCccceeEEEEecCCCCCCCCeEEEeCCCeEEEEe-C-CceEEEEcCCC
Q 020019 202 GLNGIVYHPDGFLIVIHTFSGNLFKIDIVDGVGEGEEIKLIRVAGGPLSFGDGLELLSPTKLVVAG-N-PSARLVESSDG 279 (332)
Q Consensus 202 ~~nGi~~~~dG~Lyva~~~~~~i~~id~~~~~~~~~~~~~v~~~g~~~~~pdGi~~~~dG~l~va~-~-~~~~~v~~~dg 279 (332)
....+++++++.++++-...+.|..++++++ ....+... ..-.....++++++++++++. . ...++....++
T Consensus 138 ~~~~~~~s~~~~~l~~g~~dg~i~~~d~~~~-----~~~~~~~~-~~~~~i~~~~~~~~~~~l~~~~~d~~i~~~~~~~~ 211 (299)
T d1nr0a2 138 NSSCVALSNDKQFVAVGGQDSKVHVYKLSGA-----SVSEVKTI-VHPAEITSVAFSNNGAFLVATDQSRKVIPYSVANN 211 (299)
T ss_dssp CEEEEEECTTSCEEEEEETTSEEEEEEEETT-----EEEEEEEE-ECSSCEEEEEECTTSSEEEEEETTSCEEEEEGGGT
T ss_pred ccccccccccccccccccccccccccccccc-----cccccccc-ccccccccccccccccccccccccccccccccccc
Confidence 2457899999955545556778888888765 22222221 122345688999998877664 2 33343344444
|
| >d2madh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Methylamine dehydrogenase, H-chain domain: Methylamine dehydrogenase, H-chain species: Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]
Probab=98.53 E-value=2e-05 Score=69.55 Aligned_cols=184 Identities=15% Similarity=0.084 Sum_probs=102.5
Q ss_pred cccceEEcCCCCEEE-EEecCCeEEEEECCCCCCCccceeeeEEecccCcCCCc--cceEEEeCCCCeEEEEEeCcCCCc
Q 020019 46 FRECAKWDDSGRRFI-VSFLDGGIGQVAVPDDYPPGTVLEEVTLVKDLELTGNG--SLGLVLDHPRNRLLVVAADVFGNK 122 (332)
Q Consensus 46 ~pegia~d~~g~~~~-~~~~~g~I~~vd~~~~~~~~~~~~~~~~~~~~~~~~~~--~~gi~vd~~~g~l~v~~~~~~~~~ 122 (332)
.|.++++.++|+..+ +...++++..++..+++. .. .........+.. ...+..+++ +. ++....
T Consensus 166 ~~~~~~~s~~g~~~~v~~~~dg~~~~~~~~~~~~----~~--~~~~~~~~~~~~~~~~~~~~~~~-~~-~~~~~~----- 232 (373)
T d2madh_ 166 SPTCYHIHPGAPSTFYLLCAQGGLAKTDHAGGAA----GA--GLVGAMLTAAQNLLTQPAQANKS-GR-IVWPVY----- 232 (373)
T ss_pred cceeEEEecCCCcEEEEEcCCCeEEEEEcCCcee----eE--EEeeeccccCccceeeeEEECCC-ce-EEEecC-----
Confidence 567888999987655 447789999999876652 11 111100101112 233444543 33 333221
Q ss_pred cceEEEEECCCCcEEEEEecCCCCC-------CCCCccceEECCCCc-EEEEe---------CCCCeEEEEcCC-CceEE
Q 020019 123 YSAVAAYDLSTWNRLFLTQLSGPSD-------GKSCADDVTVDAEGN-AYVTD---------VTGSKIWKVGVK-GEFLS 184 (332)
Q Consensus 123 ~~~l~~~d~~~g~~~~~~~l~~~~~-------~~~~~ndiavd~dG~-lyvtd---------~~~~~I~~v~~~-g~~~~ 184 (332)
.+.+..++..+++............ .......+++.++|. +|+.. ...+.|..+|.. ++...
T Consensus 233 ~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~v~~~d~~t~~~~~ 312 (373)
T d2madh_ 233 SGKILQADISAAGATNKAPIDALSGGRKADTWRPGGWQQVAYLKSSDGIYLLTSEQSAWKLHAAAKEVTSVTGLVGQTSS 312 (373)
T ss_pred CceEEEEEcCCCeEEEEEeeccccCcEEeeeeccCcceeeEEecCCCeEEEecCCCceEEeecCCCeEEEEECCCCcEEE
Confidence 2345666666554433222211000 012344567777764 55443 334455566643 33332
Q ss_pred EecCCCCCCcccccCccccCeEEEccCc-e-EEEEeCCCCeEEEEeCCCCCCccceeEEEEecCCCCCCCCeEEEeCC
Q 020019 185 IISSPLFTPKEWYKNLVGLNGIVYHPDG-F-LIVIHTFSGNLFKIDIVDGVGEGEEIKLIRVAGGPLSFGDGLELLSP 260 (332)
Q Consensus 185 ~~~~~~~~~p~~~~~~~~~nGi~~~~dG-~-Lyva~~~~~~i~~id~~~~~~~~~~~~~v~~~g~~~~~pdGi~~~~d 260 (332)
.+. ....+.+++|+||| + ||++....+.|+.+|..+++ .++.+...| ..|..|++..+
T Consensus 313 ~~~-----------~~~~~~~~a~spDG~~~l~vt~~~d~~v~v~D~~tg~----~~~~~~~~g---~~P~~l~~~~~ 372 (373)
T d2madh_ 313 QIS-----------LGHDVDAISVAQDGGPDLYALSAGTEVLHIYDAGAGD----QDQSTVELG---SGPQVLSVMNE 372 (373)
T ss_pred Eec-----------CCCCeeEEEECCCCCEEEEEEeCCCCeEEEEECCCCC----EEEEECCCC---CCCcEEEEecC
Confidence 221 12357899999999 4 68888899999999999883 566565332 67899998764
|
| >d1crua_ b.68.2.1 (A:) Soluble quinoprotein glucose dehydrogenase {Acinetobacter calcoaceticus [TaxId: 471]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Soluble quinoprotein glucose dehydrogenase family: Soluble quinoprotein glucose dehydrogenase domain: Soluble quinoprotein glucose dehydrogenase species: Acinetobacter calcoaceticus [TaxId: 471]
Probab=98.48 E-value=7.2e-07 Score=83.06 Aligned_cols=157 Identities=11% Similarity=0.135 Sum_probs=98.2
Q ss_pred ccceEEEeCCCCeEEEEEeCcCCCccceEEEEECCCCcEEEEEecCCC---CCCCCCccceEECCC----CcEEEEeCC-
Q 020019 98 GSLGLVLDHPRNRLLVVAADVFGNKYSAVAAYDLSTWNRLFLTQLSGP---SDGKSCADDVTVDAE----GNAYVTDVT- 169 (332)
Q Consensus 98 ~~~gi~vd~~~g~l~v~~~~~~~~~~~~l~~~d~~~g~~~~~~~l~~~---~~~~~~~ndiavd~d----G~lyvtd~~- 169 (332)
.|.+|++.++ |+|||+... .++|.+++.++++......++.. ..+....-||++||+ +.+|++-+.
T Consensus 28 ~P~~la~~pd-g~llVter~-----~G~i~~v~~~~g~~~~i~~~~~~~~~~~ge~GLLgia~~Pdf~~n~~iYvsyt~~ 101 (450)
T d1crua_ 28 KPHALLWGPD-NQIWLTERA-----TGKILRVNPESGSVKTVFQVPEIVNDADGQNGLLGFAFHPDFKNNPYIYISGTFK 101 (450)
T ss_dssp SEEEEEECTT-SCEEEEETT-----TCEEEEECTTTCCEEEEEECTTCCCCTTSSCSEEEEEECTTTTTSCEEEEEEEEE
T ss_pred CceEEEEeCC-CeEEEEEec-----CCEEEEEECCCCcEeecccCCccccccCCCCceeeEEeCCCCccCCEEEEEEecC
Confidence 8999999997 999999842 46799999888877666655321 123356778999986 568986431
Q ss_pred -----------CCeEEEEcCC--CceE----EEecC-CCCCCcccccCccccCeEEEccCceEEEEeCC-----------
Q 020019 170 -----------GSKIWKVGVK--GEFL----SIISS-PLFTPKEWYKNLVGLNGIVYHPDGFLIVIHTF----------- 220 (332)
Q Consensus 170 -----------~~~I~~v~~~--g~~~----~~~~~-~~~~~p~~~~~~~~~nGi~~~~dG~Lyva~~~----------- 220 (332)
...|.++..+ .... .++.. +.. ..-.-..|+|++||.||++--.
T Consensus 102 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~i~~~~p~~-------~~H~gg~l~fgpDG~LYvs~Gd~~~~~~~~~~~ 174 (450)
T d1crua_ 102 NPKSTDKELPNQTIIRRYTYNKSTDTLEKPVDLLAGLPSS-------KDHQSGRLVIGPDQKIYYTIGDQGRNQLAYLFL 174 (450)
T ss_dssp CTTC--CCSCEEEEEEEEEEETTTTEEEEEEEEEEEECCC-------SSCCEEEEEECTTSCEEEEECCTTTTSGGGTTS
T ss_pred CCCCcccccccceEEEeeecccccccccceEEEeeccccc-------ccccccceeEcCCCCEEEEecCCCccccccccc
Confidence 0123343322 1111 11110 100 1112468999999999998643
Q ss_pred ---------------------CCeEEEEeCCCCCCccce-----eEEEEecCCCCCCCCeEEEeCCCeEEEEeCC
Q 020019 221 ---------------------SGNLFKIDIVDGVGEGEE-----IKLIRVAGGPLSFGDGLELLSPTKLVVAGNP 269 (332)
Q Consensus 221 ---------------------~~~i~~id~~~~~~~~~~-----~~~v~~~g~~~~~pdGi~~~~dG~l~va~~~ 269 (332)
.++|+|++++........ ..++-.. .+..|-||+++++|+||+++++
T Consensus 175 ~~~~~~~~~~~~~~~q~~~~~~Gkilri~~dg~~~~dnP~~~~~~~ei~a~--G~RNp~g~~~~p~g~l~~~e~G 247 (450)
T d1crua_ 175 PNQAQHTPTQQELNGKDYHTYMGKVLRLNLDGSIPKDNPSFNGVVSHIYTL--GHRNPQGLAFTPNGKLLQSEQG 247 (450)
T ss_dssp CCCTTCCCCHHHHHTTCCTTCSSEEEEECTTSCCCTTCCEETTEECSEEEB--CCSEEEEEEECTTSCEEEEEEC
T ss_pred ccccccCcccccccccccccccCceEEeeccccccccccccccccceEEEe--ccccccceeecccceeeecccc
Confidence 378999998743211111 1112222 4678999999999999999753
|
| >d1mdah_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Methylamine dehydrogenase, H-chain domain: Methylamine dehydrogenase, H-chain species: Paracoccus denitrificans [TaxId: 266]
Probab=98.43 E-value=3.1e-06 Score=75.54 Aligned_cols=150 Identities=9% Similarity=-0.108 Sum_probs=93.2
Q ss_pred EEEeCCCCeEEEEEeCcCCCccceEEEEECCCCcEEEEEecCCCCCCCCCccceEECCCCc-EEEEeCC---------CC
Q 020019 102 LVLDHPRNRLLVVAADVFGNKYSAVAAYDLSTWNRLFLTQLSGPSDGKSCADDVTVDAEGN-AYVTDVT---------GS 171 (332)
Q Consensus 102 i~vd~~~g~l~v~~~~~~~~~~~~l~~~d~~~g~~~~~~~l~~~~~~~~~~ndiavd~dG~-lyvtd~~---------~~ 171 (332)
++..++..+.|++..... .+...++.+|.++++....... .+...+++.|||+ ||++... .+
T Consensus 25 ~a~~~~~~~~~v~~~~~~-~g~~~~~~~d~~~~~~~~~~~~-------~~~~~~a~spDg~~i~~~~~~~~~~~~g~~d~ 96 (368)
T d1mdah_ 25 HGPGAISRRSHITLPAYF-AGTTENWVSCAGCGVTLGHSLG-------AFLSLAVAGHSGSDFALASTSFARSAKGKRTD 96 (368)
T ss_dssp CCCCCCTTEEEEEECTTT-CSSEEEEEEETTTTEEEEEEEE-------CTTCEEEECTTSSCEEEEEEEETTTTSSSEEE
T ss_pred cccCCCCcceeEEeeccC-CCcceEEEEeCCCCcEEEEEeC-------CCCCcceECCCCCEEEEEcccCccccccccCC
Confidence 344454356777753221 1345799999999998776554 2234699999985 8887632 35
Q ss_pred eEEEEcCC-CceEEEecCCCCCCcccccCccccCeEEEccCc-eEEEEeCCCCeEEEEeCCCCCCccceeEEEEecCCCC
Q 020019 172 KIWKVGVK-GEFLSIISSPLFTPKEWYKNLVGLNGIVYHPDG-FLIVIHTFSGNLFKIDIVDGVGEGEEIKLIRVAGGPL 249 (332)
Q Consensus 172 ~I~~v~~~-g~~~~~~~~~~~~~p~~~~~~~~~nGi~~~~dG-~Lyva~~~~~~i~~id~~~~~~~~~~~~~v~~~g~~~ 249 (332)
.|..+|+. ++....+..+.... ......|.+++|+||| +||+++...+.++.+|+.+++ .+..+..++...
T Consensus 97 ~v~v~D~~t~~~~~~i~~p~~~~---~~~g~~p~~~a~SpDGk~l~va~~~~~~v~~~d~~~~~----~~~~~~~~~~~~ 169 (368)
T d1mdah_ 97 YVEVFDPVTFLPIADIELPDAPR---FSVGPRVHIIGNCASSACLLFFLFGSSAAAGLSVPGAS----DDQLTKSASCFH 169 (368)
T ss_dssp EEEEECTTTCCEEEEEEETTSCS---CCBSCCTTSEEECTTSSCEEEEECSSSCEEEEEETTTE----EEEEEECSSCCC
T ss_pred eEEEEECCCCcEeeeecCCccce---ecccCCccceEECCCCCEEEEEeCCCCeEEEEECCCCc----EeEEeeccCcce
Confidence 68999976 45443332211110 0123457899999999 999999999999999999873 455555542111
Q ss_pred CC----CCeEEEeCCCeEEEE
Q 020019 250 SF----GDGLELLSPTKLVVA 266 (332)
Q Consensus 250 ~~----pdGi~~~~dG~l~va 266 (332)
.. ...+++.+||++++.
T Consensus 170 ~~~~~~~~~v~~~~Dg~~~~~ 190 (368)
T d1mdah_ 170 IHPGAAATHYLGSCPASLAAS 190 (368)
T ss_dssp CEEEETTEEECCCCTTSCEEE
T ss_pred EccCCCceEEEEcCCCCEEEE
Confidence 11 222444566665444
|
| >d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Tricorn protease domain 2 family: Tricorn protease domain 2 domain: Tricorn protease domain 2 species: Archaeon Thermoplasma acidophilum [TaxId: 2303]
Probab=98.35 E-value=1.7e-05 Score=69.05 Aligned_cols=174 Identities=11% Similarity=0.037 Sum_probs=106.1
Q ss_pred EEcC-CCCEEEEEecCCeEEEEECCCCCCCccceeeeEEecccCcCCCccceEEEeCCCCe-EEEEEeCcCCCccceEEE
Q 020019 51 KWDD-SGRRFIVSFLDGGIGQVAVPDDYPPGTVLEEVTLVKDLELTGNGSLGLVLDHPRNR-LLVVAADVFGNKYSAVAA 128 (332)
Q Consensus 51 a~d~-~g~~~~~~~~~g~I~~vd~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~vd~~~g~-l~v~~~~~~~~~~~~l~~ 128 (332)
-|+| ||+++... ..|+|+.++..++.. +.+ .+ +.....+++.|+ |+ |+++..+ ....+.+
T Consensus 9 ~fSP~dG~~~a~~-~~g~v~v~d~~~~~~-------~~~-~~----~~~v~~~~~spD-g~~l~~~~~~----~g~~v~v 70 (360)
T d1k32a3 9 DFSPLDGDLIAFV-SRGQAFIQDVSGTYV-------LKV-PE----PLRIRYVRRGGD-TKVAFIHGTR----EGDFLGI 70 (360)
T ss_dssp EEEECGGGCEEEE-ETTEEEEECTTSSBE-------EEC-SC----CSCEEEEEECSS-SEEEEEEEET----TEEEEEE
T ss_pred cccCCCCCEEEEE-ECCeEEEEECCCCcE-------EEc-cC----CCCEEEEEECCC-CCEEEEEEcC----CCCEEEE
Confidence 4777 78766444 358999998876541 122 11 125789999997 65 4444443 1235889
Q ss_pred EECCCCcEEEEEecCCCCCCCCCccceEECCCCcEEEEeCCCCeEEEEcCCC-ceEEEecCCCCCCcccccCccccCeEE
Q 020019 129 YDLSTWNRLFLTQLSGPSDGKSCADDVTVDAEGNAYVTDVTGSKIWKVGVKG-EFLSIISSPLFTPKEWYKNLVGLNGIV 207 (332)
Q Consensus 129 ~d~~~g~~~~~~~l~~~~~~~~~~ndiavd~dG~lyvtd~~~~~I~~v~~~g-~~~~~~~~~~~~~p~~~~~~~~~nGi~ 207 (332)
||.++++...... .......+++.|||+..++....+.++.++.++ +........ ......++
T Consensus 71 ~d~~~~~~~~~~~------~~~~v~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~ 134 (360)
T d1k32a3 71 YDYRTGKAEKFEE------NLGNVFAMGVDRNGKFAVVANDRFEIMTVDLETGKPTVIERSR----------EAMITDFT 134 (360)
T ss_dssp EETTTCCEEECCC------CCCSEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECS----------SSCCCCEE
T ss_pred EECCCCcEEEeeC------CCceEEeeeecccccccceeccccccccccccccceeeeeecc----------cccccchh
Confidence 9999887654221 134567899999999877777888888888764 333332211 12346899
Q ss_pred EccCc-eEEEEeCC---------CCeEEEEeCCCCCCccceeEEEEecCCCCCCCCeEEEeCCCeEEEE
Q 020019 208 YHPDG-FLIVIHTF---------SGNLFKIDIVDGVGEGEEIKLIRVAGGPLSFGDGLELLSPTKLVVA 266 (332)
Q Consensus 208 ~~~dG-~Lyva~~~---------~~~i~~id~~~~~~~~~~~~~v~~~g~~~~~pdGi~~~~dG~l~va 266 (332)
++||| .|.++... .+.++.++..++ ....+. . ......++++.+||+.++.
T Consensus 135 ~spdg~~la~~~~~~~~~~~~~~~~~~~v~d~~~~-----~~~~~~-~--~~~~~~~~~~spdg~~l~~ 195 (360)
T d1k32a3 135 ISDNSRFIAYGFPLKHGETDGYVMQAIHVYDMEGR-----KIFAAT-T--ENSHDYAPAFDADSKNLYY 195 (360)
T ss_dssp ECTTSCEEEEEEEECSSTTCSCCEEEEEEEETTTT-----EEEECS-C--SSSBEEEEEECTTSCEEEE
T ss_pred hccceeeeeeeccccccceeeccccceeeeccccC-----ceeeec-c--cccccccccccCCCCEEEE
Confidence 99999 66655432 234556676654 222111 1 1123346777888774443
|
| >d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Methylamine dehydrogenase, H-chain domain: Methylamine dehydrogenase, H-chain species: Paracoccus denitrificans [TaxId: 266]
Probab=98.31 E-value=7.4e-05 Score=65.01 Aligned_cols=146 Identities=11% Similarity=-0.040 Sum_probs=89.2
Q ss_pred eCCCCeEEEEEeCcCCCccceEEEEECCCCcEEEEEecCCCCCCCCCccceEECCCCc-EEEEeCC---------CCeEE
Q 020019 105 DHPRNRLLVVAADVFGNKYSAVAAYDLSTWNRLFLTQLSGPSDGKSCADDVTVDAEGN-AYVTDVT---------GSKIW 174 (332)
Q Consensus 105 d~~~g~l~v~~~~~~~~~~~~l~~~d~~~g~~~~~~~l~~~~~~~~~~ndiavd~dG~-lyvtd~~---------~~~I~ 174 (332)
.|+..++||.+..... ....+++||.+++++...+.. ...+ ++++.|||+ ||+++.. .+.|.
T Consensus 10 spdg~~~~v~~~~~~~-~~~~v~v~D~~tg~~~~~~~~------g~~~-~~a~SpDg~~l~v~~~~~~~~~~g~~d~~v~ 81 (355)
T d2bbkh_ 10 APDARRVYVNDPAHFA-AVTQQFVIDGEAGRVIGMIDG------GFLP-NPVVADDGSFIAHASTVFSRIARGERTDYVE 81 (355)
T ss_dssp CCCTTEEEEEECGGGC-SSEEEEEEETTTTEEEEEEEE------CSSC-EEEECTTSSCEEEEEEEEEETTEEEEEEEEE
T ss_pred CCCCCEEEEEecccCC-CcCeEEEEECCCCcEEEEEEC------CCCC-ceEEcCCCCEEEEEeCCCccccccCCCCEEE
Confidence 4554678888753221 245799999999988766543 1223 699999996 8987642 46788
Q ss_pred EEcCC-CceEEEecCCCCCCcccccCccccCeEEEccCc-eEEEEeCCC-CeEEEEeCCCCCCccceeEEEEecCC----
Q 020019 175 KVGVK-GEFLSIISSPLFTPKEWYKNLVGLNGIVYHPDG-FLIVIHTFS-GNLFKIDIVDGVGEGEEIKLIRVAGG---- 247 (332)
Q Consensus 175 ~v~~~-g~~~~~~~~~~~~~p~~~~~~~~~nGi~~~~dG-~Lyva~~~~-~~i~~id~~~~~~~~~~~~~v~~~g~---- 247 (332)
.+|.. ++....+..+.... ......+++++|++|| ++|+++... ..+..++..++ +.+..+..++.
T Consensus 82 v~D~~t~~~~~~~~~~~~~~---~~~~~~~~~~~~s~dg~~~~v~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~ 154 (355)
T d2bbkh_ 82 VFDPVTLLPTADIELPDAPR---FLVGTYPWMTSLTPDGKTLLFYQFSPAPAVGVVDLEGK----AFKRMLDVPDCYHIF 154 (355)
T ss_dssp EECTTTCCEEEEEEETTCCC---CCBSCCGGGEEECTTSSEEEEEECSSSCEEEEEETTTT----EEEEEEECCSEEEEE
T ss_pred EEECCCCCEEEEEecCCcce---eecCCCCceEEEecCCCeeEEecCCCCceeeeeecCCC----cEeeEEecCCcceEe
Confidence 89976 44443322111110 0123468899999999 999998654 45666777766 24444544310
Q ss_pred CCCCCCeEEEeCCCeEEE
Q 020019 248 PLSFGDGLELLSPTKLVV 265 (332)
Q Consensus 248 ~~~~pdGi~~~~dG~l~v 265 (332)
.......+++.+||+.++
T Consensus 155 ~~~~~~~~~~~~dg~~~~ 172 (355)
T d2bbkh_ 155 PTAPDTFFMHCRDGSLAK 172 (355)
T ss_dssp EEETTEEEEEETTSCEEE
T ss_pred ecCCcceEEEcCCCCEEE
Confidence 012334466777765433
|
| >d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Arp2/3 complex 41 kDa subunit ARPC1 species: Cow (Bos taurus) [TaxId: 9913]
Probab=98.30 E-value=0.00022 Score=63.04 Aligned_cols=199 Identities=9% Similarity=-0.003 Sum_probs=113.2
Q ss_pred cccceEEcCCCCEEEEEecCCeEEEEECCCCCCCccceeeeEEecccCcCCCccceEEEeCCCCeEEEEEeCcCCCccce
Q 020019 46 FRECAKWDDSGRRFIVSFLDGGIGQVAVPDDYPPGTVLEEVTLVKDLELTGNGSLGLVLDHPRNRLLVVAADVFGNKYSA 125 (332)
Q Consensus 46 ~pegia~d~~g~~~~~~~~~g~I~~vd~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~vd~~~g~l~v~~~~~~~~~~~~ 125 (332)
....++|+|+++++++...++.|..++..++.. + ......+ ....+..+.++|+...++++..+ +.
T Consensus 53 ~V~~l~fsp~~~~l~s~s~D~~i~vWd~~~~~~-----~--~~~~~~~-~~~~v~~i~~~p~~~~l~~~s~d------~~ 118 (371)
T d1k8kc_ 53 QVTGVDWAPDSNRIVTCGTDRNAYVWTLKGRTW-----K--PTLVILR-INRAARCVRWAPNEKKFAVGSGS------RV 118 (371)
T ss_dssp CEEEEEEETTTTEEEEEETTSCEEEEEEETTEE-----E--EEEECCC-CSSCEEEEEECTTSSEEEEEETT------SS
T ss_pred CEEEEEECCCCCEEEEEECCCeEEEEeeccccc-----c--ccccccc-ccccccccccccccccceeeccc------Cc
Confidence 457789999999887776688888888765542 1 1111111 11357889999973344444432 33
Q ss_pred EEEEECCCCc--EEEEEecCCCCCCCCCccceEECCCCcEEEEeCCCCeEEEEcCCCceE-EEe-----cCC-CCCCcc-
Q 020019 126 VAAYDLSTWN--RLFLTQLSGPSDGKSCADDVTVDAEGNAYVTDVTGSKIWKVGVKGEFL-SII-----SSP-LFTPKE- 195 (332)
Q Consensus 126 l~~~d~~~g~--~~~~~~l~~~~~~~~~~ndiavd~dG~lyvtd~~~~~I~~v~~~g~~~-~~~-----~~~-~~~~p~- 195 (332)
+..|+.+... ........ .-......++++|+|+.+++-+..+.|..++...+.. ... ... ......
T Consensus 119 i~i~~~~~~~~~~~~~~~~~---~~~~~v~~v~~~p~~~~l~s~s~D~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 195 (371)
T d1k8kc_ 119 ISICYFEQENDWWVCKHIKK---PIRSTVLSLDWHPNSVLLAAGSCDFKCRIFSAYIKEVEERPAPTPWGSKMPFGELMF 195 (371)
T ss_dssp EEEEEEETTTTEEEEEEECT---TCCSCEEEEEECTTSSEEEEEETTSCEEEEECCCTTTSCCCCCBTTBSCCCTTCEEE
T ss_pred ceeeeeeccccccccccccc---ccccccccccccccccceeccccCcEEEEEeeccCccccccccccccccccceeeee
Confidence 4455443332 22222221 1124556799999998888877777777776542210 000 000 000000
Q ss_pred -cccCccccCeEEEccCceEEEEeCCCCeEEEEeCCCCCCccceeEEEEecCCCCCCCCeEEEeCCCeEEEEeC
Q 020019 196 -WYKNLVGLNGIVYHPDGFLIVIHTFSGNLFKIDIVDGVGEGEEIKLIRVAGGPLSFGDGLELLSPTKLVVAGN 268 (332)
Q Consensus 196 -~~~~~~~~nGi~~~~dG~Lyva~~~~~~i~~id~~~~~~~~~~~~~v~~~g~~~~~pdGi~~~~dG~l~va~~ 268 (332)
........++++|+|+|...++-...+.|..+|...+ ..+..+... ......+++.+||++++++.
T Consensus 196 ~~~~~~~~v~~~~~s~~g~~l~s~~~d~~i~iwd~~~~----~~~~~~~~~---~~~v~s~~fs~d~~~la~g~ 262 (371)
T d1k8kc_ 196 ESSSSCGWVHGVCFSANGSRVAWVSHDSTVCLADADKK----MAVATLASE---TLPLLAVTFITESSLVAAGH 262 (371)
T ss_dssp ECCCCSSCEEEEEECSSSSEEEEEETTTEEEEEEGGGT----TEEEEEECS---SCCEEEEEEEETTEEEEEET
T ss_pred eccCccCcEEEEEeecccccccccccCCcceEEeeecc----cceeeeecc---cccceeeeecCCCCEEEEEc
Confidence 0112234578999999944444456788988998866 245544432 12235788999999888864
|
| >d1fwxa2 b.69.3.1 (A:8-451) Nitrous oxide reductase, N-terminal domain {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Nitrous oxide reductase, N-terminal domain family: Nitrous oxide reductase, N-terminal domain domain: Nitrous oxide reductase, N-terminal domain species: Paracoccus denitrificans [TaxId: 266]
Probab=98.28 E-value=6.2e-05 Score=68.15 Aligned_cols=208 Identities=13% Similarity=0.118 Sum_probs=124.1
Q ss_pred cCCccccceEEcC---CCCEEEEE-ecCCeEEEEECCCCCCCccceeeeEEecccCcCCCccceEEEeCCCCeEEEEEeC
Q 020019 42 SSSFFRECAKWDD---SGRRFIVS-FLDGGIGQVAVPDDYPPGTVLEEVTLVKDLELTGNGSLGLVLDHPRNRLLVVAAD 117 (332)
Q Consensus 42 ~~~~~pegia~d~---~g~~~~~~-~~~g~I~~vd~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~vd~~~g~l~v~~~~ 117 (332)
++.-+| .+.+.. ||+.+|++ -.+++|.|||.++.+. . ..+.-|-. .++.|++...+.++.||..+.
T Consensus 83 GD~HHP-~~S~TdGtyDGrylFVNDkan~RVAvIdl~~fkt-----~--kIi~iPn~--~~~HG~r~~~~p~T~YV~~~~ 152 (459)
T d1fwxa2 83 GDLHHV-HMSFTEGKYDGRFLFMNDKANTRVARVRCDVMKC-----D--AILEIPNA--KGIHGLRPQKWPRSNYVFCNG 152 (459)
T ss_dssp CCBCCE-EEEEETTEEEEEEEEEEETTTTEEEEEETTTTEE-----E--EEEECSSC--CSEEEEEECCSSBCSEEEEEE
T ss_pred CCcCCC-cccccCCccceeEEEEEcCCCceEEEEECcceee-----e--EEEecCCC--CCCceeecccCCCeEEEEccC
Confidence 344466 344333 68866666 6789999999987652 1 23333432 267888886654677888754
Q ss_pred cCC--------------CccceEEEEECCCCcEEEEEecCCCCCCCCCccceEECCCCc-EEEEeCCCC-----------
Q 020019 118 VFG--------------NKYSAVAAYDLSTWNRLFLTQLSGPSDGKSCADDVTVDAEGN-AYVTDVTGS----------- 171 (332)
Q Consensus 118 ~~~--------------~~~~~l~~~d~~~g~~~~~~~l~~~~~~~~~~ndiavd~dG~-lyvtd~~~~----------- 171 (332)
... .-.+.+.++|.++.++.+.+.+. ..+.++.++++|+ +|+|.....
T Consensus 153 e~~vP~pndg~~l~d~~~y~~~~t~ID~~tm~V~~QV~V~------g~ld~~~~s~dGK~af~TsyNSE~g~~l~e~ta~ 226 (459)
T d1fwxa2 153 EDETPLVNDGTNMEDVANYVNVFTAVDADKWEVAWQVLVS------GNLDNCDADYEGKWAFSTSYNSEKGMTLPEMTAA 226 (459)
T ss_dssp CSCEESSCSSSSTTCGG-EEEEEEEEETTTTEEEEEEEES------SCCCCEEECSSSSEEEEEESCTTCCSSHHHHTCC
T ss_pred ccccccCCCCccccchhhcceEEEEEecCCceEEEEeeeC------CChhccccCCCCCEEEEEeccccCCcchhhcccc
Confidence 211 01134567899988887766662 3577899999997 677654211
Q ss_pred ---eEEEEcC--------CCceEEE-----ecCCC---CCCcccccCccccCeEEEccCc-eEEEEeCCCCeEEEEeCCC
Q 020019 172 ---KIWKVGV--------KGEFLSI-----ISSPL---FTPKEWYKNLVGLNGIVYHPDG-FLIVIHTFSGNLFKIDIVD 231 (332)
Q Consensus 172 ---~I~~v~~--------~g~~~~~-----~~~~~---~~~p~~~~~~~~~nGi~~~~dG-~Lyva~~~~~~i~~id~~~ 231 (332)
.+..++. +|+.... +.... ...-..++....|.|+.++||| ++|++...+..+..||.+.
T Consensus 227 e~D~i~V~n~~rie~av~~Gk~~eingV~VVD~~~~~~~~v~~yIPVpKsPHGV~vSPDGKyi~VaGKLs~tVSViD~~K 306 (459)
T d1fwxa2 227 EMDHIVVFNIAEIEKAIAAGDYQELNGVKVVDGRKEASSLFTRYIPIANNPHGCNMAPDKKHLCVAGKLSPTVTVLDVTR 306 (459)
T ss_dssp SEEEEEEEEHHHHHHHHHHTCSEEETTEEEEECSGG--CSSEEEEEEESSCCCEEECTTSSEEEEECTTSSBEEEEEGGG
T ss_pred cceEEEEechHHhHHhhhcCCcEEeCCceeecccccCCcceeEEEecCCCCCceEECCCCCEEEEeCCcCCcEEEEEehh
Confidence 2222221 1221111 11000 0000013345679999999999 9999999999999999862
Q ss_pred ------CCCccceeEEEEecCCCC-CCCCeEEEeCCCeEEEEeC
Q 020019 232 ------GVGEGEEIKLIRVAGGPL-SFGDGLELLSPTKLVVAGN 268 (332)
Q Consensus 232 ------~~~~~~~~~~v~~~g~~~-~~pdGi~~~~dG~l~va~~ 268 (332)
.+.+...+ +... .++ -+|=-.++|.+|+.|++..
T Consensus 307 i~~~~~~~~~~~~~--~~~e-~elglgPLht~fd~~g~aytslf 347 (459)
T d1fwxa2 307 FDAVFYENADPRSA--VVAE-PELGLGPLHTAFDGRGNAYTSLF 347 (459)
T ss_dssp HHHHHHSCC-GGGG--EEEC-CBCCSCEEEEEECTTSEEEEEET
T ss_pred hhhhhcccCCcccc--EEee-cccCcCccccccCCCceEEEEee
Confidence 11110111 1111 112 4677789999999999964
|
| >d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Platelet-activating factor acetylhydrolase IB subunit alpha species: Mouse (Mus musculus) [TaxId: 10090]
Probab=98.06 E-value=0.0021 Score=53.35 Aligned_cols=247 Identities=10% Similarity=0.053 Sum_probs=126.6
Q ss_pred eeEEEecCCccccceEEcCCCCEEEEEecCCeEEEEECCCCCCCccceeeeEEecccCcCCCccceEEEeCCCCeEEEEE
Q 020019 36 HVYHYHSSSFFRECAKWDDSGRRFIVSFLDGGIGQVAVPDDYPPGTVLEEVTLVKDLELTGNGSLGLVLDHPRNRLLVVA 115 (332)
Q Consensus 36 ~~i~~~~~~~~pegia~d~~g~~~~~~~~~g~I~~vd~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~vd~~~g~l~v~~ 115 (332)
....+.+.......++++++++++++...++.|..++..+++.. . ++.... ..+..+.++++ +.+.+..
T Consensus 9 ~~~~L~GH~~~I~~l~~sp~~~~l~s~s~Dg~i~iWd~~~~~~~----~--~~~~h~----~~V~~~~~~~~-~~~~~~~ 77 (317)
T d1vyhc1 9 EKYALSGHRSPVTRVIFHPVFSVMVSASEDATIKVWDYETGDFE----R--TLKGHT----DSVQDISFDHS-GKLLASC 77 (317)
T ss_dssp CSCEEECCSSCEEEEEECSSSSEEEEEESSSCEEEEETTTCCCC----E--EECCCS----SCEEEEEECTT-SSEEEEE
T ss_pred ccEEEcCCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCCEE----E--EEeCCC----CcEEEEeeecc-ccccccc
Confidence 34455555445678999999998887777899999998766531 1 121000 12233333332 2222111
Q ss_pred eCcCC-------------------------------------CccceEEEEECCCCcEEEEEecCCCCCCCCCccceEEC
Q 020019 116 ADVFG-------------------------------------NKYSAVAAYDLSTWNRLFLTQLSGPSDGKSCADDVTVD 158 (332)
Q Consensus 116 ~~~~~-------------------------------------~~~~~l~~~d~~~g~~~~~~~l~~~~~~~~~~ndiavd 158 (332)
..... ...+.+..||.++++....... .......++++
T Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~ 152 (317)
T d1vyhc1 78 SADMTIKLWDFQGFECIRTMHGHDHNVSSVSIMPNGDHIVSASRDKTIKMWEVQTGYCVKTFTG-----HREWVRMVRPN 152 (317)
T ss_dssp ETTSCCCEEETTSSCEEECCCCCSSCEEEEEECSSSSEEEEEETTSEEEEEETTTCCEEEEEEC-----CSSCEEEEEEC
T ss_pred ccccccccccccccccccccccccccceeeeccCCCceEEeeccCcceeEeecccceeeeEEcc-----CCCcceeeecc
Confidence 11000 0124566778877766544332 12456678899
Q ss_pred CCCcEEEEeCCCCeEEEEcCC-CceEEEecCCCCC------Ccc----cccCccccCeEEEccCceEEEEeCCCCeEEEE
Q 020019 159 AEGNAYVTDVTGSKIWKVGVK-GEFLSIISSPLFT------PKE----WYKNLVGLNGIVYHPDGFLIVIHTFSGNLFKI 227 (332)
Q Consensus 159 ~dG~lyvtd~~~~~I~~v~~~-g~~~~~~~~~~~~------~p~----~~~~~~~~nGi~~~~dG~Lyva~~~~~~i~~i 227 (332)
++|+++++-+..+.|...+.. ++....+...... .|. ......+........++.++++-...+.|..+
T Consensus 153 ~~~~~l~~~~~d~~v~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~ 232 (317)
T d1vyhc1 153 QDGTLIASCSNDQTVRVWVVATKECKAELREHRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMW 232 (317)
T ss_dssp TTSSEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECCSCGGGGGGGCCSCC-------CCEEEEEETTSEEEEE
T ss_pred cCCCEEEEEeCCCeEEEEeeccceeeEEEecCCCCceEEEEeeccccceeeccccceeeeeccCCceeEeccCCCEEEEE
Confidence 999888887777888777755 3332222110000 000 00111223333444455455555567788888
Q ss_pred eCCCCCCccceeEEEEecCCCCCCCCeEEEeCCCeEEEEe-C-CceEEEEcCCCceEEEEEeeecCCCcccceEEEE-EC
Q 020019 228 DIVDGVGEGEEIKLIRVAGGPLSFGDGLELLSPTKLVVAG-N-PSARLVESSDGWETAAVVAKFSGPVHRLATAATV-KD 304 (332)
Q Consensus 228 d~~~~~~~~~~~~~v~~~g~~~~~pdGi~~~~dG~l~va~-~-~~~~~v~~~dg~~~~~~~~~~~~~~~~~pt~va~-~~ 304 (332)
+..++ ..+..+.. .-.....+++.++|+++++. . +..++....++. .+..+..- -...+++++ .+
T Consensus 233 ~~~~~----~~~~~~~~---~~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~----~~~~~~~h-~~~V~~~~~s~~ 300 (317)
T d1vyhc1 233 DVSTG----MCLMTLVG---HDNWVRGVLFHSGGKFILSCADDKTLRVWDYKNKR----CMKTLNAH-EHFVTSLDFHKT 300 (317)
T ss_dssp ETTTT----EEEEEEEC---CSSCEEEEEECSSSSCEEEEETTTEEEEECCTTSC----CCEEEECC-SSCEEEEEECSS
T ss_pred ECCCC----cEEEEEeC---CCCCEEEEEECCCCCEEEEEECCCeEEEEECCCCc----EEEEEcCC-CCCEEEEEEcCC
Confidence 88876 23444432 22345678899998877764 3 333333445552 22222211 123477888 55
Q ss_pred CeEEEE
Q 020019 305 GRVYLN 310 (332)
Q Consensus 305 g~lyv~ 310 (332)
+++.++
T Consensus 301 ~~~l~s 306 (317)
T d1vyhc1 301 APYVVT 306 (317)
T ss_dssp SSCEEE
T ss_pred CCEEEE
Confidence 555554
|
| >d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: beta1-subunit of the signal-transducing G protein heterotrimer species: Cow (Bos taurus) [TaxId: 9913]
Probab=98.06 E-value=0.0025 Score=53.94 Aligned_cols=235 Identities=11% Similarity=0.116 Sum_probs=125.4
Q ss_pred EecCCccccceEEcCCCCEEEEEecCCeEEEEECCCCCCCccceeeeEEecccCcCCCccceEEEeCCCCeEEEEEeCcC
Q 020019 40 YHSSSFFRECAKWDDSGRRFIVSFLDGGIGQVAVPDDYPPGTVLEEVTLVKDLELTGNGSLGLVLDHPRNRLLVVAADVF 119 (332)
Q Consensus 40 ~~~~~~~pegia~d~~g~~~~~~~~~g~I~~vd~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~vd~~~g~l~v~~~~~~ 119 (332)
+.+......+++|+++++++++...+|.|..+|..+++. .. .+... ......+++.++ +..+++...
T Consensus 51 L~GH~~~I~~l~~s~~~~~l~sgs~Dg~v~iWd~~~~~~----~~--~~~~~----~~~v~~v~~~~~-~~~l~~~~~-- 117 (340)
T d1tbga_ 51 LRGHLAKIYAMHWGTDSRLLVSASQDGKLIIWDSYTTNK----VH--AIPLR----SSWVMTCAYAPS-GNYVACGGL-- 117 (340)
T ss_dssp ECCCSSCEEEEEECTTSSEEEEEETTTEEEEEETTTTEE----EE--EEECS----CSCEEEEEECTT-SSEEEEEET--
T ss_pred ECCCCCCEEEEEECCCCCEEEEEECCCceeeeeccccee----EE--EEecc----cccEEeeEeecc-ceeeeeecc--
Confidence 344444556899999999888777889999999877652 11 22211 125678899986 554443321
Q ss_pred CCccceEEEEECCCCcE--EEEEecCCC--------------------------------------CCCCCCccceEECC
Q 020019 120 GNKYSAVAAYDLSTWNR--LFLTQLSGP--------------------------------------SDGKSCADDVTVDA 159 (332)
Q Consensus 120 ~~~~~~l~~~d~~~g~~--~~~~~l~~~--------------------------------------~~~~~~~ndiavd~ 159 (332)
...+..|+...... .....+.+. .............+
T Consensus 118 ---d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 194 (340)
T d1tbga_ 118 ---DNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQIVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAP 194 (340)
T ss_dssp ---TCCEEEEESSSSCSCCCEEEEECCCSSCEEEEEEEETTEEEEEETTTEEEEEETTTTEEEEEEECCSSCEEEEEECT
T ss_pred ---cceeecccccccccccccceecccccccccccccccccccccccccccccccccccccccccccccceeEeeecccc
Confidence 12233333221110 000000000 00011223344555
Q ss_pred CCcEEEEeCCCCeEEEEcCC-CceEEEecCCCCCCcccccCccccCeEEEccCceEEEEeCCCCeEEEEeCCCCCCccce
Q 020019 160 EGNAYVTDVTGSKIWKVGVK-GEFLSIISSPLFTPKEWYKNLVGLNGIVYHPDGFLIVIHTFSGNLFKIDIVDGVGEGEE 238 (332)
Q Consensus 160 dG~lyvtd~~~~~I~~v~~~-g~~~~~~~~~~~~~p~~~~~~~~~nGi~~~~dG~Lyva~~~~~~i~~id~~~~~~~~~~ 238 (332)
.+.++++-...+.|..+|.. ++....+.. .....+.|+++|+|.++++-...+.|..++.... ..
T Consensus 195 ~~~~~~~~~~d~~v~i~d~~~~~~~~~~~~----------h~~~i~~v~~~p~~~~l~s~s~d~~i~~~~~~~~----~~ 260 (340)
T d1tbga_ 195 DTRLFVSGACDASAKLWDVREGMCRQTFTG----------HESDINAICFFPNGNAFATGSDDATCRLFDLRAD----QE 260 (340)
T ss_dssp TSSEEEEEETTTEEEEEETTTTEEEEEECC----------CSSCEEEEEECTTSSEEEEEETTSCEEEEETTTT----EE
T ss_pred ccceeEEeecCceEEEEECCCCcEEEEEeC----------CCCCeEEEEECCCCCEEEEEeCCCeEEEEeeccc----cc
Confidence 55666666666777777654 343322211 1123578999999955555566788888888765 23
Q ss_pred eEEEEecCCCCCCCCeEEEeCCCeEEEEeC--CceEEEEcCCCceEEEEEeeecCCCcccceEEEE-ECCeEEEE
Q 020019 239 IKLIRVAGGPLSFGDGLELLSPTKLVVAGN--PSARLVESSDGWETAAVVAKFSGPVHRLATAATV-KDGRVYLN 310 (332)
Q Consensus 239 ~~~v~~~g~~~~~pdGi~~~~dG~l~va~~--~~~~~v~~~dg~~~~~~~~~~~~~~~~~pt~va~-~~g~lyv~ 310 (332)
...+... ........+++.++|+++++.. +.+++.....+. ....+..- -...+++++ .++.+.++
T Consensus 261 ~~~~~~~-~~~~~i~~~~~s~~~~~l~~g~~dg~i~iwd~~~~~----~~~~~~~H-~~~V~~l~~s~d~~~l~s 329 (340)
T d1tbga_ 261 LMTYSHD-NIICGITSVSFSKSGRLLLAGYDDFNCNVWDALKAD----RAGVLAGH-DNRVSCLGVTDDGMAVAT 329 (340)
T ss_dssp EEEECCT-TCCSCEEEEEECSSSCEEEEEETTSCEEEEETTTCC----EEEEECCC-SSCEEEEEECTTSSCEEE
T ss_pred ccccccc-cccCceEEEEECCCCCEEEEEECCCEEEEEECCCCc----EEEEEcCC-CCCEEEEEEeCCCCEEEE
Confidence 3333322 1223456788999998877753 334444555662 33333211 122467888 55655553
|
| >d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Tup1, C-terminal domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=98.03 E-value=0.0034 Score=54.56 Aligned_cols=207 Identities=11% Similarity=0.117 Sum_probs=115.9
Q ss_pred ccceEEcCCCCEEEEEecCCeEEEEECCCCCCCccceeeeEEecccCcCCCccceEEEeCCCCeEEEEEeCcCCCccceE
Q 020019 47 RECAKWDDSGRRFIVSFLDGGIGQVAVPDDYPPGTVLEEVTLVKDLELTGNGSLGLVLDHPRNRLLVVAADVFGNKYSAV 126 (332)
Q Consensus 47 pegia~d~~g~~~~~~~~~g~I~~vd~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~vd~~~g~l~v~~~~~~~~~~~~l 126 (332)
...++++++|+++++...++.|..++...++. . .... + -......+.+.++...++.+.. .+.+
T Consensus 124 V~~l~~s~~~~~l~s~~~dg~v~i~~~~~~~~----~---~~~~--~-h~~~v~~~~~~~~~~~~~~~~~------~~~i 187 (388)
T d1erja_ 124 IRSVCFSPDGKFLATGAEDRLIRIWDIENRKI----V---MILQ--G-HEQDIYSLDYFPSGDKLVSGSG------DRTV 187 (388)
T ss_dssp EEEEEECTTSSEEEEEETTSCEEEEETTTTEE----E---EEEC--C-CSSCEEEEEECTTSSEEEEEET------TSEE
T ss_pred EEEEEECCCCCcceeccccccccccccccccc----c---cccc--c-cccccccccccccccccccccc------ceee
Confidence 45689999999888887889999999776541 1 1111 1 0124677888886334444433 3568
Q ss_pred EEEECCCCcEEEEEecCCCCCCCCCccceEECC-CCcEEEEeCCCCeEEEEcCC-CceEEEecCCCCCCcccccCccccC
Q 020019 127 AAYDLSTWNRLFLTQLSGPSDGKSCADDVTVDA-EGNAYVTDVTGSKIWKVGVK-GEFLSIISSPLFTPKEWYKNLVGLN 204 (332)
Q Consensus 127 ~~~d~~~g~~~~~~~l~~~~~~~~~~ndiavd~-dG~lyvtd~~~~~I~~v~~~-g~~~~~~~~~~~~~p~~~~~~~~~n 204 (332)
..||.++......... ......+++.+ +++++++-+..+.|..++.. ++....+........ .......
T Consensus 188 ~~~d~~~~~~~~~~~~------~~~~~~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~---~h~~~v~ 258 (388)
T d1erja_ 188 RIWDLRTGQCSLTLSI------EDGVTTVAVSPGDGKYIAAGSLDRAVRVWDSETGFLVERLDSENESGT---GHKDSVY 258 (388)
T ss_dssp EEEETTTTEEEEEEEC------SSCEEEEEECSTTCCEEEEEETTSCEEEEETTTCCEEEEEC------C---CCSSCEE
T ss_pred eeeecccccccccccc------ccccccccccCCCCCeEEEEcCCCeEEEeecccCccceeecccccccc---CCCCCEE
Confidence 8999988765544332 12233455554 57777777777888888865 443333221111000 0122357
Q ss_pred eEEEccCceEEEEeCCCCeEEEEeCCCCCCccc------eeEEEEecCCCCCCCCeEEEeCCCeEEEEeC--CceEEEEc
Q 020019 205 GIVYHPDGFLIVIHTFSGNLFKIDIVDGVGEGE------EIKLIRVAGGPLSFGDGLELLSPTKLVVAGN--PSARLVES 276 (332)
Q Consensus 205 Gi~~~~dG~Lyva~~~~~~i~~id~~~~~~~~~------~~~~v~~~g~~~~~pdGi~~~~dG~l~va~~--~~~~~v~~ 276 (332)
.++++++|.+.++-...+.|..+++..+..... ........ ........+++.++|+++++.. +..++...
T Consensus 259 ~l~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~-~~~~~v~~~~~s~~~~~l~sg~~dg~i~vwd~ 337 (388)
T d1erja_ 259 SVVFTRDGQSVVSGSLDRSVKLWNLQNANNKSDSKTPNSGTCEVTYI-GHKDFVLSVATTQNDEYILSGSKDRGVLFWDK 337 (388)
T ss_dssp EEEECTTSSEEEEEETTSEEEEEEC---------------CEEEEEE-CCSSCEEEEEECGGGCEEEEEETTSEEEEEET
T ss_pred EEEECCCCCEEEEEECCCcEEEEeccCCccccccccccccceeeecc-cccceEEEEEECCCCCEEEEEeCCCEEEEEEC
Confidence 899999995555555677888888765421000 00001111 1123456788889988777653 33444456
Q ss_pred CCC
Q 020019 277 SDG 279 (332)
Q Consensus 277 ~dg 279 (332)
.++
T Consensus 338 ~~~ 340 (388)
T d1erja_ 338 KSG 340 (388)
T ss_dssp TTC
T ss_pred CCC
Confidence 666
|
| >d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Probab=97.94 E-value=0.0012 Score=55.54 Aligned_cols=155 Identities=12% Similarity=0.078 Sum_probs=94.7
Q ss_pred cccceEEcCCCCEEEEEecCCeEEEEECCCCCCCccceeeeEEecccCcCCCccceEEEeCCCCeEEEEEeCcCCCccce
Q 020019 46 FRECAKWDDSGRRFIVSFLDGGIGQVAVPDDYPPGTVLEEVTLVKDLELTGNGSLGLVLDHPRNRLLVVAADVFGNKYSA 125 (332)
Q Consensus 46 ~pegia~d~~g~~~~~~~~~g~I~~vd~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~vd~~~g~l~v~~~~~~~~~~~~ 125 (332)
.+..+++.++|+++++.. .+.+..++.. +. . .... . .....+++.++ ++++++.. ..+.
T Consensus 101 ~~~~~~~s~~g~~~~~~~-~~~i~~~~~~--~~-----~--~~~~--~---~~~~~~~~s~~-~~~l~~g~-----~dg~ 159 (299)
T d1nr0a2 101 QPLGLAVSADGDIAVAAC-YKHIAIYSHG--KL-----T--EVPI--S---YNSSCVALSND-KQFVAVGG-----QDSK 159 (299)
T ss_dssp CEEEEEECTTSSCEEEEE-SSEEEEEETT--EE-----E--EEEC--S---SCEEEEEECTT-SCEEEEEE-----TTSE
T ss_pred cccccccccccccccccc-cccccccccc--cc-----c--cccc--c---ccccccccccc-cccccccc-----cccc
Confidence 456788888888666553 4567777632 21 1 1211 1 13456888886 55444432 2457
Q ss_pred EEEEECCCCcEEEEEecCCCCCCCCCccceEECCCCcEEEEeCCCCeEEEEcCC-CceEEEecCCCCCCcccccCccccC
Q 020019 126 VAAYDLSTWNRLFLTQLSGPSDGKSCADDVTVDAEGNAYVTDVTGSKIWKVGVK-GEFLSIISSPLFTPKEWYKNLVGLN 204 (332)
Q Consensus 126 l~~~d~~~g~~~~~~~l~~~~~~~~~~ndiavd~dG~lyvtd~~~~~I~~v~~~-g~~~~~~~~~~~~~p~~~~~~~~~n 204 (332)
+..||.++++........ .....+.++++++|+.+++-...+.|+.++.. ++...... .+.. .....+
T Consensus 160 i~~~d~~~~~~~~~~~~~----~~~~i~~~~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~--~~~~-----h~~~v~ 228 (299)
T d1nr0a2 160 VHVYKLSGASVSEVKTIV----HPAEITSVAFSNNGAFLVATDQSRKVIPYSVANNFELAHTN--SWTF-----HTAKVA 228 (299)
T ss_dssp EEEEEEETTEEEEEEEEE----CSSCEEEEEECTTSSEEEEEETTSCEEEEEGGGTTEESCCC--CCCC-----CSSCEE
T ss_pred cccccccccccccccccc----ccccccccccccccccccccccccccccccccccccccccc--cccc-----cccccc
Confidence 889999877654433331 12456789999999877777778888888865 33221111 1110 123457
Q ss_pred eEEEccCceEEEEeCCCCeEEEEeCCCC
Q 020019 205 GIVYHPDGFLIVIHTFSGNLFKIDIVDG 232 (332)
Q Consensus 205 Gi~~~~dG~Lyva~~~~~~i~~id~~~~ 232 (332)
.++++|+|.++++-...+.|..+++.++
T Consensus 229 ~l~~s~~~~~l~sgs~dg~i~iwd~~~~ 256 (299)
T d1nr0a2 229 CVSWSPDNVRLATGSLDNSVIVWNMNKP 256 (299)
T ss_dssp EEEECTTSSEEEEEETTSCEEEEETTCT
T ss_pred cccccccccceEEEcCCCEEEEEECCCC
Confidence 8999999955555556678888888865
|
| >d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: beta1-subunit of the signal-transducing G protein heterotrimer species: Cow (Bos taurus) [TaxId: 9913]
Probab=97.84 E-value=0.0018 Score=54.86 Aligned_cols=151 Identities=10% Similarity=0.056 Sum_probs=96.9
Q ss_pred cceEEcCCCCEEEEEecCCeEEEEECCCCCCCccceeeeEEecccCcCCCccceEEEeCCCCeEEEEEeCcCCCccceEE
Q 020019 48 ECAKWDDSGRRFIVSFLDGGIGQVAVPDDYPPGTVLEEVTLVKDLELTGNGSLGLVLDHPRNRLLVVAADVFGNKYSAVA 127 (332)
Q Consensus 48 egia~d~~g~~~~~~~~~g~I~~vd~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~vd~~~g~l~v~~~~~~~~~~~~l~ 127 (332)
......+.+.++++...++.|..+|..+++. .. ++... . .....++++++ +.++++... .+.+.
T Consensus 188 ~~~~~~~~~~~~~~~~~d~~v~i~d~~~~~~----~~--~~~~h-~---~~i~~v~~~p~-~~~l~s~s~-----d~~i~ 251 (340)
T d1tbga_ 188 MSLSLAPDTRLFVSGACDASAKLWDVREGMC----RQ--TFTGH-E---SDINAICFFPN-GNAFATGSD-----DATCR 251 (340)
T ss_dssp EEEEECTTSSEEEEEETTTEEEEEETTTTEE----EE--EECCC-S---SCEEEEEECTT-SSEEEEEET-----TSCEE
T ss_pred eeeccccccceeEEeecCceEEEEECCCCcE----EE--EEeCC-C---CCeEEEEECCC-CCEEEEEeC-----CCeEE
Confidence 4456777777777777789999999876642 11 22211 1 25678999996 665554432 35688
Q ss_pred EEECCCCcEEEEEecCCCCCCCCCccceEECCCCcEEEEeCCCCeEEEEcCC-CceEEEecCCCCCCcccccCccccCeE
Q 020019 128 AYDLSTWNRLFLTQLSGPSDGKSCADDVTVDAEGNAYVTDVTGSKIWKVGVK-GEFLSIISSPLFTPKEWYKNLVGLNGI 206 (332)
Q Consensus 128 ~~d~~~g~~~~~~~l~~~~~~~~~~ndiavd~dG~lyvtd~~~~~I~~v~~~-g~~~~~~~~~~~~~p~~~~~~~~~nGi 206 (332)
.||.+..+........ ........++++++|++.++-+..+.|..+|.. ++....+... ....+.|
T Consensus 252 ~~~~~~~~~~~~~~~~---~~~~~i~~~~~s~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~H----------~~~V~~l 318 (340)
T d1tbga_ 252 LFDLRADQELMTYSHD---NIICGITSVSFSKSGRLLLAGYDDFNCNVWDALKADRAGVLAGH----------DNRVSCL 318 (340)
T ss_dssp EEETTTTEEEEEECCT---TCCSCEEEEEECSSSCEEEEEETTSCEEEEETTTCCEEEEECCC----------SSCEEEE
T ss_pred EEeecccccccccccc---cccCceEEEEECCCCCEEEEEECCCEEEEEECCCCcEEEEEcCC----------CCCEEEE
Confidence 8999877665544331 113456789999999988887788999999865 5544333211 1235789
Q ss_pred EEccCceEEEEeCCCCeEEEE
Q 020019 207 VYHPDGFLIVIHTFSGNLFKI 227 (332)
Q Consensus 207 ~~~~dG~Lyva~~~~~~i~~i 227 (332)
+|+|||.++++-...+.|..+
T Consensus 319 ~~s~d~~~l~s~s~Dg~v~iW 339 (340)
T d1tbga_ 319 GVTDDGMAVATGSWDSFLKIW 339 (340)
T ss_dssp EECTTSSCEEEEETTSCEEEE
T ss_pred EEeCCCCEEEEEccCCEEEEe
Confidence 999999444444456666544
|
| >d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=97.73 E-value=0.011 Score=50.71 Aligned_cols=167 Identities=17% Similarity=0.128 Sum_probs=100.3
Q ss_pred cceEEcCCCCEEEEE--ecCCeEEEEECCCCCCCccceeeeEEecccCcCCCccceEEEeCCCCeEEEEEeCcCCCccce
Q 020019 48 ECAKWDDSGRRFIVS--FLDGGIGQVAVPDDYPPGTVLEEVTLVKDLELTGNGSLGLVLDHPRNRLLVVAADVFGNKYSA 125 (332)
Q Consensus 48 egia~d~~g~~~~~~--~~~g~I~~vd~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~vd~~~g~l~v~~~~~~~~~~~~ 125 (332)
..++++++|+.+++. -.++.+..++.++++. .. .+. .. ......+++.+++..+.++... .+.
T Consensus 119 ~~v~~s~~~~~l~~~~~~~~~~~~~~~~~~~~~----~~--~~~-~h---~~~v~~~~~~~~~~~~~~~~~~-----d~~ 183 (325)
T d1pgua1 119 SDISWDFEGRRLCVVGEGRDNFGVFISWDSGNS----LG--EVS-GH---SQRINACHLKQSRPMRSMTVGD-----DGS 183 (325)
T ss_dssp EEEEECTTSSEEEEEECCSSCSEEEEETTTCCE----EE--ECC-SC---SSCEEEEEECSSSSCEEEEEET-----TTE
T ss_pred EEEEECCCCCccceeeccccceEEEEeeccccc----ce--eee-ec---ccccccccccccccceEEEeec-----ccc
Confidence 468899999877654 2345677777665542 11 121 11 1246789999874444444332 356
Q ss_pred EEEEECCCCcEEEEEecCCCCCCCCCccceEECCC-CcEEEEeCCCCeEEEEcCC-CceEEEecCCCCCCcccccCcccc
Q 020019 126 VAAYDLSTWNRLFLTQLSGPSDGKSCADDVTVDAE-GNAYVTDVTGSKIWKVGVK-GEFLSIISSPLFTPKEWYKNLVGL 203 (332)
Q Consensus 126 l~~~d~~~g~~~~~~~l~~~~~~~~~~ndiavd~d-G~lyvtd~~~~~I~~v~~~-g~~~~~~~~~~~~~p~~~~~~~~~ 203 (332)
+..||.++++........ .........+++.|+ +.++++-...+.|..+|.. ++....+..... ..
T Consensus 184 v~~~d~~~~~~~~~~~~~--~~~~~~v~~v~~~pd~~~~l~s~~~d~~i~iwd~~~~~~~~~l~~~~~----------~v 251 (325)
T d1pgua1 184 VVFYQGPPFKFSASDRTH--HKQGSFVRDVEFSPDSGEFVITVGSDRKISCFDGKSGEFLKYIEDDQE----------PV 251 (325)
T ss_dssp EEEEETTTBEEEEEECSS--SCTTCCEEEEEECSTTCCEEEEEETTCCEEEEETTTCCEEEECCBTTB----------CC
T ss_pred cccccccccccceecccc--cCCCCccEEeeeccccceeccccccccceeeeeecccccccccccccc----------cc
Confidence 888999877665443321 111345678999997 5788888888889888865 554443321111 12
Q ss_pred CeEEEc---cCceEEEEeCCCCeEEEEeCCCCCCccceeEEEEec
Q 020019 204 NGIVYH---PDGFLIVIHTFSGNLFKIDIVDGVGEGEEIKLIRVA 245 (332)
Q Consensus 204 nGi~~~---~dG~Lyva~~~~~~i~~id~~~~~~~~~~~~~v~~~ 245 (332)
.++.++ +||.++++-...+.|..+|++++ +.++.+...
T Consensus 252 ~~~~~s~~~~dg~~l~s~s~D~~i~iwd~~~~----~~~~~~~~~ 292 (325)
T d1pgua1 252 QGGIFALSWLDSQKFATVGADATIRVWDVTTS----KCVQKWTLD 292 (325)
T ss_dssp CSCEEEEEESSSSEEEEEETTSEEEEEETTTT----EEEEEEECC
T ss_pred ccceeeeeccCCCEEEEEeCCCeEEEEECCCC----CEEEEEEec
Confidence 233444 67855555567788888898876 345555544
|
| >d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=97.70 E-value=0.012 Score=50.46 Aligned_cols=216 Identities=12% Similarity=0.013 Sum_probs=119.3
Q ss_pred eEEEecCC-ccccceEEcC--CCCEEEEEecCCeEEEEECCCCCCCccceeeeEEecccCc--CCCccceEEEeCCCCeE
Q 020019 37 VYHYHSSS-FFRECAKWDD--SGRRFIVSFLDGGIGQVAVPDDYPPGTVLEEVTLVKDLEL--TGNGSLGLVLDHPRNRL 111 (332)
Q Consensus 37 ~i~~~~~~-~~pegia~d~--~g~~~~~~~~~g~I~~vd~~~~~~~~~~~~~~~~~~~~~~--~~~~~~gi~vd~~~g~l 111 (332)
...+.+.. .....+++.| +|+++++...+|+|..++...++.. .. ......... .......++++++ ++.
T Consensus 55 ~~~~~gh~~~~v~~v~fsP~~~g~~lasgs~Dg~i~iWd~~~~~~~---~~-~~~~~~~~~~~~~~~v~~v~~s~~-~~~ 129 (325)
T d1pgua1 55 VVQFTGHGSSVVTTVKFSPIKGSQYLCSGDESGKVIVWGWTFDKES---NS-VEVNVKSEFQVLAGPISDISWDFE-GRR 129 (325)
T ss_dssp EEEECTTTTSCEEEEEECSSTTCCEEEEEETTSEEEEEEEEEEGGG---TE-EEEEEEEEEECCSSCEEEEEECTT-SSE
T ss_pred eEEEeCCCCCCEEEEEEeeCCCCCEEEEEeCCCCEEEeeecCCcce---ee-eecccccccccccCcEEEEEECCC-CCc
Confidence 34444432 2456788987 4555555567898877775543310 00 011100000 1124578999986 654
Q ss_pred EEEEeCcCCCccceEEEEECCCCcEEEEEecCCCCCCCCCccceEECCCCc-EEEEeCCCCeEEEEcCC-CceEEEecCC
Q 020019 112 LVVAADVFGNKYSAVAAYDLSTWNRLFLTQLSGPSDGKSCADDVTVDAEGN-AYVTDVTGSKIWKVGVK-GEFLSIISSP 189 (332)
Q Consensus 112 ~v~~~~~~~~~~~~l~~~d~~~g~~~~~~~l~~~~~~~~~~ndiavd~dG~-lyvtd~~~~~I~~v~~~-g~~~~~~~~~ 189 (332)
+++.... ....+..|+.++++.... +.+. ....+.+++.+++. ++++-...+.|..++.. ++......
T Consensus 130 l~~~~~~---~~~~~~~~~~~~~~~~~~--~~~h---~~~v~~~~~~~~~~~~~~~~~~d~~v~~~d~~~~~~~~~~~-- 199 (325)
T d1pgua1 130 LCVVGEG---RDNFGVFISWDSGNSLGE--VSGH---SQRINACHLKQSRPMRSMTVGDDGSVVFYQGPPFKFSASDR-- 199 (325)
T ss_dssp EEEEECC---SSCSEEEEETTTCCEEEE--CCSC---SSCEEEEEECSSSSCEEEEEETTTEEEEEETTTBEEEEEEC--
T ss_pred cceeecc---ccceEEEEeeccccccee--eeec---ccccccccccccccceEEEeecccccccccccccccceecc--
Confidence 4443221 133467788888876543 3211 24567799999875 56777777888888754 34332221
Q ss_pred CCCCcccccCccccCeEEEccCc-eEEEEeCCCCeEEEEeCCCCCCccceeEEEEecCCCCCCCCeEEEe---CCCeEEE
Q 020019 190 LFTPKEWYKNLVGLNGIVYHPDG-FLIVIHTFSGNLFKIDIVDGVGEGEEIKLIRVAGGPLSFGDGLELL---SPTKLVV 265 (332)
Q Consensus 190 ~~~~p~~~~~~~~~nGi~~~~dG-~Lyva~~~~~~i~~id~~~~~~~~~~~~~v~~~g~~~~~pdGi~~~---~dG~l~v 265 (332)
.+. ........++|+||+ .++++-...+.|..+|..+++ .+..+... .....++.+. +||++++
T Consensus 200 ~~~-----~~~~~v~~v~~~pd~~~~l~s~~~d~~i~iwd~~~~~----~~~~l~~~---~~~v~~~~~s~~~~dg~~l~ 267 (325)
T d1pgua1 200 THH-----KQGSFVRDVEFSPDSGEFVITVGSDRKISCFDGKSGE----FLKYIEDD---QEPVQGGIFALSWLDSQKFA 267 (325)
T ss_dssp SSS-----CTTCCEEEEEECSTTCCEEEEEETTCCEEEEETTTCC----EEEECCBT---TBCCCSCEEEEEESSSSEEE
T ss_pred ccc-----CCCCccEEeeeccccceeccccccccceeeeeecccc----cccccccc---ccccccceeeeeccCCCEEE
Confidence 111 012235789999985 777777778889999988762 34444321 1222334443 6777666
Q ss_pred Ee-C-CceEEEEcCCC
Q 020019 266 AG-N-PSARLVESSDG 279 (332)
Q Consensus 266 a~-~-~~~~~v~~~dg 279 (332)
+. . ...++-...++
T Consensus 268 s~s~D~~i~iwd~~~~ 283 (325)
T d1pgua1 268 TVGADATIRVWDVTTS 283 (325)
T ss_dssp EEETTSEEEEEETTTT
T ss_pred EEeCCCeEEEEECCCC
Confidence 64 2 33444455666
|
| >d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Tricorn protease domain 2 family: Tricorn protease domain 2 domain: Tricorn protease domain 2 species: Archaeon Thermoplasma acidophilum [TaxId: 2303]
Probab=97.69 E-value=0.0019 Score=55.29 Aligned_cols=144 Identities=13% Similarity=0.115 Sum_probs=88.5
Q ss_pred CccccceEEcCCCCEEEEE-ecCC-eEEEEECCCCCCCccceeeeEEecccCcCCCccceEEEeCCCCeEEEEEeCcCCC
Q 020019 44 SFFRECAKWDDSGRRFIVS-FLDG-GIGQVAVPDDYPPGTVLEEVTLVKDLELTGNGSLGLVLDHPRNRLLVVAADVFGN 121 (332)
Q Consensus 44 ~~~pegia~d~~g~~~~~~-~~~g-~I~~vd~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~vd~~~g~l~v~~~~~~~~ 121 (332)
+....+++|+|||+.++.. ..++ .|+.++..+++. + .+.... ..+..++++|+ |+.+++...
T Consensus 42 ~~~v~~~~~spDg~~l~~~~~~~g~~v~v~d~~~~~~-----~--~~~~~~----~~v~~~~~spd-g~~l~~~~~---- 105 (360)
T d1k32a3 42 PLRIRYVRRGGDTKVAFIHGTREGDFLGIYDYRTGKA-----E--KFEENL----GNVFAMGVDRN-GKFAVVAND---- 105 (360)
T ss_dssp CSCEEEEEECSSSEEEEEEEETTEEEEEEEETTTCCE-----E--ECCCCC----CSEEEEEECTT-SSEEEEEET----
T ss_pred CCCEEEEEECCCCCEEEEEEcCCCCEEEEEECCCCcE-----E--EeeCCC----ceEEeeeeccc-ccccceecc----
Confidence 3356789999999876654 4443 688888876651 1 232211 25678999997 664554432
Q ss_pred ccceEEEEECCCCcEEEEEecCCCCCCCCCccceEECCCCcEE-EEeC---------CCCeEEEEcCCCceEEEecCCCC
Q 020019 122 KYSAVAAYDLSTWNRLFLTQLSGPSDGKSCADDVTVDAEGNAY-VTDV---------TGSKIWKVGVKGEFLSIISSPLF 191 (332)
Q Consensus 122 ~~~~l~~~d~~~g~~~~~~~l~~~~~~~~~~ndiavd~dG~ly-vtd~---------~~~~I~~v~~~g~~~~~~~~~~~ 191 (332)
...+..|+.++++........ .....++++.|||+.+ ++.. ..+.++.++..+........
T Consensus 106 -~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~spdg~~la~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~--- 176 (360)
T d1k32a3 106 -RFEIMTVDLETGKPTVIERSR-----EAMITDFTISDNSRFIAYGFPLKHGETDGYVMQAIHVYDMEGRKIFAATT--- 176 (360)
T ss_dssp -TSEEEEEETTTCCEEEEEECS-----SSCCCCEEECTTSCEEEEEEEECSSTTCSCCEEEEEEEETTTTEEEECSC---
T ss_pred -ccccccccccccceeeeeecc-----cccccchhhccceeeeeeeccccccceeeccccceeeeccccCceeeecc---
Confidence 456889999988876554431 2456789999999743 3321 12346666666443322211
Q ss_pred CCcccccCccccCeEEEccCc-eEEEEeC
Q 020019 192 TPKEWYKNLVGLNGIVYHPDG-FLIVIHT 219 (332)
Q Consensus 192 ~~p~~~~~~~~~nGi~~~~dG-~Lyva~~ 219 (332)
......++++++|| .|++...
T Consensus 177 -------~~~~~~~~~~spdg~~l~~~s~ 198 (360)
T d1k32a3 177 -------ENSHDYAPAFDADSKNLYYLSY 198 (360)
T ss_dssp -------SSSBEEEEEECTTSCEEEEEES
T ss_pred -------cccccccccccCCCCEEEEEeC
Confidence 11234678999999 7776543
|
| >d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Tup1, C-terminal domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=97.68 E-value=0.013 Score=50.58 Aligned_cols=199 Identities=10% Similarity=0.002 Sum_probs=110.6
Q ss_pred cccceEEcCCCCEEEEEecCCeEEEEECCCCCCCccceeeeEEecccCcCCCccceEEEeCCCCeEEEEEeCcCCCccce
Q 020019 46 FRECAKWDDSGRRFIVSFLDGGIGQVAVPDDYPPGTVLEEVTLVKDLELTGNGSLGLVLDHPRNRLLVVAADVFGNKYSA 125 (332)
Q Consensus 46 ~pegia~d~~g~~~~~~~~~g~I~~vd~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~vd~~~g~l~v~~~~~~~~~~~~ 125 (332)
....+.+.+++..++.....+.|..++..+... . ...... .....+.+.+.+++++++... .+.
T Consensus 165 ~v~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~-----~--~~~~~~----~~~~~~~~~~~~~~~l~~~~~-----d~~ 228 (388)
T d1erja_ 165 DIYSLDYFPSGDKLVSGSGDRTVRIWDLRTGQC-----S--LTLSIE----DGVTTVAVSPGDGKYIAAGSL-----DRA 228 (388)
T ss_dssp CEEEEEECTTSSEEEEEETTSEEEEEETTTTEE-----E--EEEECS----SCEEEEEECSTTCCEEEEEET-----TSC
T ss_pred cccccccccccccccccccceeeeeeecccccc-----c--cccccc----cccccccccCCCCCeEEEEcC-----CCe
Confidence 334678888888777777778898888765431 1 111111 134455666655665555432 356
Q ss_pred EEEEECCCCcEEEEEecCCCC-C-CCCCccceEECCCCcEEEEeCCCCeEEEEcCCC-ceEEEecCCCCCCc--ccccCc
Q 020019 126 VAAYDLSTWNRLFLTQLSGPS-D-GKSCADDVTVDAEGNAYVTDVTGSKIWKVGVKG-EFLSIISSPLFTPK--EWYKNL 200 (332)
Q Consensus 126 l~~~d~~~g~~~~~~~l~~~~-~-~~~~~ndiavd~dG~lyvtd~~~~~I~~v~~~g-~~~~~~~~~~~~~p--~~~~~~ 200 (332)
+..||.++++........... . .......+++.++|+.+++-+..+.|..++... +............. ......
T Consensus 229 i~i~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~ 308 (388)
T d1erja_ 229 VRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTRDGQSVVSGSLDRSVKLWNLQNANNKSDSKTPNSGTCEVTYIGHK 308 (388)
T ss_dssp EEEEETTTCCEEEEEC------CCCSSCEEEEEECTTSSEEEEEETTSEEEEEEC---------------CEEEEEECCS
T ss_pred EEEeecccCccceeeccccccccCCCCCEEEEEECCCCCEEEEEECCCcEEEEeccCCccccccccccccceeeeccccc
Confidence 889999988776554321110 0 123467899999998888877778888777542 21111000000000 000112
Q ss_pred cccCeEEEccCceEEEEeCCCCeEEEEeCCCCCCccceeEEEEecCCCCCCCCeEE------EeCCCeEEEEe
Q 020019 201 VGLNGIVYHPDGFLIVIHTFSGNLFKIDIVDGVGEGEEIKLIRVAGGPLSFGDGLE------LLSPTKLVVAG 267 (332)
Q Consensus 201 ~~~nGi~~~~dG~Lyva~~~~~~i~~id~~~~~~~~~~~~~v~~~g~~~~~pdGi~------~~~dG~l~va~ 267 (332)
.....++++++|.+.++-...+.|..+|..+++ .+..+... -.....++ +.++|+++++.
T Consensus 309 ~~v~~~~~s~~~~~l~sg~~dg~i~vwd~~~~~----~~~~l~~H---~~~V~~~~~~~~~~~spd~~~l~s~ 374 (388)
T d1erja_ 309 DFVLSVATTQNDEYILSGSKDRGVLFWDKKSGN----PLLMLQGH---RNSVISVAVANGSSLGPEYNVFATG 374 (388)
T ss_dssp SCEEEEEECGGGCEEEEEETTSEEEEEETTTCC----EEEEEECC---SSCEEEEEECSSCTTCTTCEEEEEE
T ss_pred ceEEEEEECCCCCEEEEEeCCCEEEEEECCCCc----EEEEEeCC---CCCEEEEEEecCcccCCCCCEEEEE
Confidence 345789999999444455567889999998773 45444421 12223333 45678877775
|
| >d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Platelet-activating factor acetylhydrolase IB subunit alpha species: Mouse (Mus musculus) [TaxId: 10090]
Probab=97.64 E-value=0.011 Score=48.68 Aligned_cols=189 Identities=14% Similarity=0.119 Sum_probs=108.1
Q ss_pred cccceEEcCCCCEEEEEecCCeEEEEECCCCCCCccceeeeEEecccCcCCCccceEEEeCCCCeEEEEEeCcCCCccce
Q 020019 46 FRECAKWDDSGRRFIVSFLDGGIGQVAVPDDYPPGTVLEEVTLVKDLELTGNGSLGLVLDHPRNRLLVVAADVFGNKYSA 125 (332)
Q Consensus 46 ~pegia~d~~g~~~~~~~~~g~I~~vd~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~vd~~~g~l~v~~~~~~~~~~~~ 125 (332)
....+.+.++++.+++...++.+..++..+++. .. .+.... .....++++++ +.++++... .+.
T Consensus 103 ~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~----~~--~~~~~~----~~~~~~~~~~~-~~~l~~~~~-----d~~ 166 (317)
T d1vyhc1 103 NVSSVSIMPNGDHIVSASRDKTIKMWEVQTGYC----VK--TFTGHR----EWVRMVRPNQD-GTLIASCSN-----DQT 166 (317)
T ss_dssp CEEEEEECSSSSEEEEEETTSEEEEEETTTCCE----EE--EEECCS----SCEEEEEECTT-SSEEEEEET-----TSC
T ss_pred cceeeeccCCCceEEeeccCcceeEeeccccee----ee--EEccCC----CcceeeecccC-CCEEEEEeC-----CCe
Confidence 445678899998887777788999998876652 11 222111 24567888886 665554432 346
Q ss_pred EEEEECCCCcEEEEEecCC---------CCC------CCCCccceEECCCCcEEEEeCCCCeEEEEcCC-CceEEEecCC
Q 020019 126 VAAYDLSTWNRLFLTQLSG---------PSD------GKSCADDVTVDAEGNAYVTDVTGSKIWKVGVK-GEFLSIISSP 189 (332)
Q Consensus 126 l~~~d~~~g~~~~~~~l~~---------~~~------~~~~~ndiavd~dG~lyvtd~~~~~I~~v~~~-g~~~~~~~~~ 189 (332)
+..|+.++++......-.. |.. .............+.++++-+..+.|..++.. ++....+...
T Consensus 167 v~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~~ 246 (317)
T d1vyhc1 167 VRVWVVATKECKAELREHRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGMCLMTLVGH 246 (317)
T ss_dssp EEEEETTTCCEEEEECCCSSCEEEEEECCSCGGGGGGGCCSCC-------CCEEEEEETTSEEEEEETTTTEEEEEEECC
T ss_pred EEEEeeccceeeEEEecCCCCceEEEEeeccccceeeccccceeeeeccCCceeEeccCCCEEEEEECCCCcEEEEEeCC
Confidence 7888888776554322100 000 00111112222334556666666777777754 4433222111
Q ss_pred CCCCcccccCccccCeEEEccCceEEEEeCCCCeEEEEeCCCCCCccceeEEEEecCCCCCCCCeEEEeCCCeEEEEe
Q 020019 190 LFTPKEWYKNLVGLNGIVYHPDGFLIVIHTFSGNLFKIDIVDGVGEGEEIKLIRVAGGPLSFGDGLELLSPTKLVVAG 267 (332)
Q Consensus 190 ~~~~p~~~~~~~~~nGi~~~~dG~Lyva~~~~~~i~~id~~~~~~~~~~~~~v~~~g~~~~~pdGi~~~~dG~l~va~ 267 (332)
......++++++|.+.++-...+.|..+++.+++ .+..+.. .......+++.++|+++++.
T Consensus 247 ----------~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~----~~~~~~~---h~~~V~~~~~s~~~~~l~s~ 307 (317)
T d1vyhc1 247 ----------DNWVRGVLFHSGGKFILSCADDKTLRVWDYKNKR----CMKTLNA---HEHFVTSLDFHKTAPYVVTG 307 (317)
T ss_dssp ----------SSCEEEEEECSSSSCEEEEETTTEEEEECCTTSC----CCEEEEC---CSSCEEEEEECSSSSCEEEE
T ss_pred ----------CCCEEEEEECCCCCEEEEEECCCeEEEEECCCCc----EEEEEcC---CCCCEEEEEEcCCCCEEEEE
Confidence 1235689999999555555567889889988763 4554542 22345678899998876664
|
| >d1k32a2 b.68.7.1 (A:39-319) Tricorn protease N-terminal domain {Archaeon Thermoplasma acidophilum [TaxId: 2303]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Tricorn protease N-terminal domain family: Tricorn protease N-terminal domain domain: Tricorn protease N-terminal domain species: Archaeon Thermoplasma acidophilum [TaxId: 2303]
Probab=97.36 E-value=0.027 Score=46.26 Aligned_cols=119 Identities=14% Similarity=0.117 Sum_probs=63.5
Q ss_pred EEcCC--CCEEEEEecCCeEEEEECCCCCCCccceeeeEEecccCcCCCccceEEEeCCCCeEEEEEeCcCCCccceEEE
Q 020019 51 KWDDS--GRRFIVSFLDGGIGQVAVPDDYPPGTVLEEVTLVKDLELTGNGSLGLVLDHPRNRLLVVAADVFGNKYSAVAA 128 (332)
Q Consensus 51 a~d~~--g~~~~~~~~~g~I~~vd~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~vd~~~g~l~v~~~~~~~~~~~~l~~ 128 (332)
..+|+ |+.++.. ..+.||.++.++++. . .+...++ ...+.++.||..+|.++...........|++
T Consensus 5 ~~sPdi~G~~v~f~-~~~dl~~~d~~~g~~-----~--~Lt~~~~----~~~~p~~SPDG~~iaf~~~~~~~~~~~~i~~ 72 (281)
T d1k32a2 5 LLNPDIHGDRIIFV-CCDDLWEHDLKSGST-----R--KIVSNLG----VINNARFFPDGRKIAIRVMRGSSLNTADLYF 72 (281)
T ss_dssp CEEEEEETTEEEEE-ETTEEEEEETTTCCE-----E--EEECSSS----EEEEEEECTTSSEEEEEEEESTTCCEEEEEE
T ss_pred ccCCCCCCCEEEEE-eCCcEEEEECCCCCE-----E--EEecCCC----cccCEEECCCCCEEEEEEeeCCCCCceEEEE
Confidence 44566 7644332 357788888886652 1 2322222 3456788997334444432211112346889
Q ss_pred EECCCCcEEEEEecCCC-CCCCCCccceEECCCCc-EEEEeCC-----CCeEEEEcCCCc
Q 020019 129 YDLSTWNRLFLTQLSGP-SDGKSCADDVTVDAEGN-AYVTDVT-----GSKIWKVGVKGE 181 (332)
Q Consensus 129 ~d~~~g~~~~~~~l~~~-~~~~~~~ndiavd~dG~-lyvtd~~-----~~~I~~v~~~g~ 181 (332)
++..+++.......... ..........++.|||+ |+++... ...++.++.++.
T Consensus 73 ~~~~~g~~~~lt~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~~~~ 132 (281)
T d1k32a2 73 YNGENGEIKRITYFSGKSTGRRMFTDVAGFDPDGNLIISTDAMQPFSSMTCLYRVENDGI 132 (281)
T ss_dssp EETTTTEEEECCCCCEEEETTEECSEEEEECTTCCEEEEECTTSSSTTCCEEEEEEGGGT
T ss_pred EEecCCceEEeeecCCCccCccccccccccCCCCCEEEEEEccCCCccceeeeeecCCCc
Confidence 99988877543222100 00113456688999986 6666443 234555555543
|
| >d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Antiviral protein Ski8 (Ski8p) species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=97.16 E-value=0.0047 Score=54.51 Aligned_cols=156 Identities=13% Similarity=0.093 Sum_probs=89.6
Q ss_pred ccceEEEeCCCCeEEEEEeCcCCCccceEEEEECCCCcEEEEEecCCCCCC-CCCccceEECCCCcEEEEeCCCC---eE
Q 020019 98 GSLGLVLDHPRNRLLVVAADVFGNKYSAVAAYDLSTWNRLFLTQLSGPSDG-KSCADDVTVDAEGNAYVTDVTGS---KI 173 (332)
Q Consensus 98 ~~~gi~vd~~~g~l~v~~~~~~~~~~~~l~~~d~~~g~~~~~~~l~~~~~~-~~~~ndiavd~dG~lyvtd~~~~---~I 173 (332)
.+..+++.++ +.+..+.. .+.|.+||.++++.....+......+ ....+.+++.|+|++.++-+..+ .|
T Consensus 186 ~~~~v~~s~d-g~lasgs~------Dg~i~iwd~~~~~~~~~~~~~~~l~~h~~~V~~l~~spdg~~l~sgs~D~t~~~i 258 (393)
T d1sq9a_ 186 FATSVDISER-GLIATGFN------NGTVQISELSTLRPLYNFESQHSMINNSNSIRSVKFSPQGSLLAIAHDSNSFGCI 258 (393)
T ss_dssp CCCEEEECTT-SEEEEECT------TSEEEEEETTTTEEEEEEECCC---CCCCCEEEEEECSSTTEEEEEEEETTEEEE
T ss_pred cEEEEEECCC-CEEEEEeC------CCcEEEEeecccccccccccccccccccceEEEcccccccceeeeecCCCCccee
Confidence 3567888886 75443332 45789999999887655543211111 24567899999999877755433 45
Q ss_pred EEEcCC-CceEEEecCCCCC--Ccc-cccCccccCeEEEccCceEEEEeCCCCeEEEEeCCCCCCccceeEEEEecCCCC
Q 020019 174 WKVGVK-GEFLSIISSPLFT--PKE-WYKNLVGLNGIVYHPDGFLIVIHTFSGNLFKIDIVDGVGEGEEIKLIRVAGGPL 249 (332)
Q Consensus 174 ~~v~~~-g~~~~~~~~~~~~--~p~-~~~~~~~~nGi~~~~dG~Lyva~~~~~~i~~id~~~~~~~~~~~~~v~~~g~~~ 249 (332)
..+|.. |+....+...... ... ........+.|+|+|||.+.++-...++|..+|.+++ +.+..+.......
T Consensus 259 ~lwd~~~g~~~~~l~~~~~~~~~~~~~~gH~~~V~~l~fspd~~~l~S~s~D~~v~vWd~~~g----~~~~~l~gH~~~v 334 (393)
T d1sq9a_ 259 TLYETEFGERIGSLSVPTHSSQASLGEFAHSSWVMSLSFNDSGETLCSAGWDGKLRFWDVKTK----ERITTLNMHCDDI 334 (393)
T ss_dssp EEEETTTCCEEEEECBC--------CCBSBSSCEEEEEECSSSSEEEEEETTSEEEEEETTTT----EEEEEEECCGGGC
T ss_pred eecccccceeeeeeccccccccceeeeecccCceeeeccCCCCCeeEEECCCCEEEEEECCCC----CEEEEECCcCCcc
Confidence 556654 4443332211100 000 0112234678999999977777778899999999987 3455444211111
Q ss_pred -CCCCeEEEeCCCeEE
Q 020019 250 -SFGDGLELLSPTKLV 264 (332)
Q Consensus 250 -~~pdGi~~~~dG~l~ 264 (332)
.....++++++|...
T Consensus 335 ~~~~~~~~~~~~~~~~ 350 (393)
T d1sq9a_ 335 EIEEDILAVDEHGDSL 350 (393)
T ss_dssp SSGGGCCCBCTTSCBC
T ss_pred cCCccEEEECCCCCEE
Confidence 123356677766543
|
| >d1h6la_ b.68.3.1 (A:) Thermostable phytase (3-phytase) {Bacillus amyloliquefaciens [TaxId: 1390]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Thermostable phytase (3-phytase) family: Thermostable phytase (3-phytase) domain: Thermostable phytase (3-phytase) species: Bacillus amyloliquefaciens [TaxId: 1390]
Probab=97.15 E-value=0.025 Score=49.62 Aligned_cols=166 Identities=16% Similarity=0.217 Sum_probs=85.7
Q ss_pred ccceEEEEECCCCcEEEEEecCCCCCCCCCccceE------ECCCCc--EEEEeCCC--Ce--EEEEcCCCceEEEecCC
Q 020019 122 KYSAVAAYDLSTWNRLFLTQLSGPSDGKSCADDVT------VDAEGN--AYVTDVTG--SK--IWKVGVKGEFLSIISSP 189 (332)
Q Consensus 122 ~~~~l~~~d~~~g~~~~~~~l~~~~~~~~~~ndia------vd~dG~--lyvtd~~~--~~--I~~v~~~g~~~~~~~~~ 189 (332)
+.+.|++||++ |+.+..... .++|.+. ++.++. +++++... .. +|.+++.......+...
T Consensus 48 K~~Gl~vYdL~-G~~l~~~~~-------Gr~NNVDvr~~~~l~~~~~di~vasnR~~~~~~l~~~~id~~~~~l~~~~~~ 119 (353)
T d1h6la_ 48 KKSGLAVYSLE-GKMLHSYHT-------GKLNNVDIRYDFPLNGKKVDIAAASNRSEGKNTIEIYAIDGKNGTLQSITDP 119 (353)
T ss_dssp TTSCCEEEETT-CCEEEECCS-------SCEEEEEEEEEEEETTEEEEEEEEEECCTTTCEEEEEEEETTTTEEEECSCS
T ss_pred CcCCEEEEcCC-CcEEEeccc-------CCcCccccccccccCCcceEEEEEeCCcCcceeEEEEEecCccccccccccc
Confidence 35569999996 777655432 3444433 333332 35566542 33 56777654433333221
Q ss_pred CCCCcccccCccccCeEEE--ccC-ceEE-EEeCCCCeEEEEeC--CC-CCCccceeEEEEecCCCCCCCCeEEEeCC-C
Q 020019 190 LFTPKEWYKNLVGLNGIVY--HPD-GFLI-VIHTFSGNLFKIDI--VD-GVGEGEEIKLIRVAGGPLSFGDGLELLSP-T 261 (332)
Q Consensus 190 ~~~~p~~~~~~~~~nGi~~--~~d-G~Ly-va~~~~~~i~~id~--~~-~~~~~~~~~~v~~~g~~~~~pdGi~~~~d-G 261 (332)
.. |. ......+.|+|+ +++ |.+| +.....+++..+.+ .. +......++.+..+ +.+.|+++|.+ +
T Consensus 120 ~~--p~-~~~~~~vYGlc~y~~~~~g~~~afv~~k~G~v~q~~l~~~~~g~v~~~lvr~f~~~----~q~EGCVvDde~~ 192 (353)
T d1h6la_ 120 NR--PI-ASAIDEVYGFSLYHSQKTGKYYAMVTGKEGEFEQYELNADKNGYISGKKVRAFKMN----SQTEGMAADDEYG 192 (353)
T ss_dssp SS--CE-ECSSSSCCCEEEEECTTTCCEEEEEECSSSEEEEEEEEECTTSSEEEEEEEEEECS----SCEEEEEEETTTT
T ss_pred cc--cc-ccccCcceEEEEEecCCCCeEEEEEEcCCceEEEEEEEcCCCCceeeEeeeccCCC----CccceEEEeCCCC
Confidence 11 10 112345789999 554 5444 33334667755444 32 22212234444433 46789999976 8
Q ss_pred eEEEEe-CCceEEEEc-CCCceEEEEEeeecCCC-cccceEEEE
Q 020019 262 KLVVAG-NPSARLVES-SDGWETAAVVAKFSGPV-HRLATAATV 302 (332)
Q Consensus 262 ~l~va~-~~~~~~v~~-~dg~~~~~~~~~~~~~~-~~~pt~va~ 302 (332)
+||++. +.+.|.+.. ++.....+++....+.. ..-|.++++
T Consensus 193 ~LyisEE~~Giw~~~a~~~~~~~~~~i~~~~g~~l~~D~EGlai 236 (353)
T d1h6la_ 193 SLYIAEEDEAIWKFSAEPDGGSNGTVIDRADGRHLTPDIEGLTI 236 (353)
T ss_dssp EEEEEETTTEEEEEESSTTSCSCCEEEEECSSSSCCSCEEEEEE
T ss_pred cEEEecCccceEEEEeccCCCccceeeecccCccccCCccccEE
Confidence 999997 445565432 22213334443332222 234788887
|
| >d1fwxa2 b.69.3.1 (A:8-451) Nitrous oxide reductase, N-terminal domain {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Nitrous oxide reductase, N-terminal domain family: Nitrous oxide reductase, N-terminal domain domain: Nitrous oxide reductase, N-terminal domain species: Paracoccus denitrificans [TaxId: 266]
Probab=97.10 E-value=0.0022 Score=57.81 Aligned_cols=91 Identities=15% Similarity=0.097 Sum_probs=63.9
Q ss_pred CCCc-EEEEeCCCCeEEEEcCCCc-eEEEecCCCCCCcccccCccccCeEEEccCc-eEEEEeCCC--------------
Q 020019 159 AEGN-AYVTDVTGSKIWKVGVKGE-FLSIISSPLFTPKEWYKNLVGLNGIVYHPDG-FLIVIHTFS-------------- 221 (332)
Q Consensus 159 ~dG~-lyvtd~~~~~I~~v~~~g~-~~~~~~~~~~~~p~~~~~~~~~nGi~~~~dG-~Lyva~~~~-------------- 221 (332)
.||+ +||.|..+++|.|||.+.. .......+ ...++.|+...+++ +.||.+...
T Consensus 97 yDGrylFVNDkan~RVAvIdl~~fkt~kIi~iP---------n~~~~HG~r~~~~p~T~YV~~~~e~~vP~pndg~~l~d 167 (459)
T d1fwxa2 97 YDGRFLFMNDKANTRVARVRCDVMKCDAILEIP---------NAKGIHGLRPQKWPRSNYVFCNGEDETPLVNDGTNMED 167 (459)
T ss_dssp EEEEEEEEEETTTTEEEEEETTTTEEEEEEECS---------SCCSEEEEEECCSSBCSEEEEEECSCEESSCSSSSTTC
T ss_pred cceeEEEEEcCCCceEEEEECcceeeeEEEecC---------CCCCCceeecccCCCeEEEEccCccccccCCCCccccc
Confidence 4786 9999999999999998853 33333333 23467899998888 899987543
Q ss_pred -----CeEEEEeCCCCCCccceeEEEEecCCCCCCCCeEEEeCCCeEEEE
Q 020019 222 -----GNLFKIDIVDGVGEGEEIKLIRVAGGPLSFGDGLELLSPTKLVVA 266 (332)
Q Consensus 222 -----~~i~~id~~~~~~~~~~~~~v~~~g~~~~~pdGi~~~~dG~l~va 266 (332)
+.+..||.++. +....+.++ ..|+++.++++|+..++
T Consensus 168 ~~~y~~~~t~ID~~tm----~V~~QV~V~----g~ld~~~~s~dGK~af~ 209 (459)
T d1fwxa2 168 VANYVNVFTAVDADKW----EVAWQVLVS----GNLDNCDADYEGKWAFS 209 (459)
T ss_dssp GG-EEEEEEEEETTTT----EEEEEEEES----SCCCCEEECSSSSEEEE
T ss_pred hhhcceEEEEEecCCc----eEEEEeeeC----CChhccccCCCCCEEEE
Confidence 23467888766 234445555 36899999999875444
|
| >d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Cdc4 propeller domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=96.98 E-value=0.074 Score=44.23 Aligned_cols=216 Identities=11% Similarity=-0.044 Sum_probs=110.6
Q ss_pred ceeEEEecCCccc-cceEEcCCCCEEEEEecCCeEEEEECCCCCCCccceeeeEEecccCcCCCccceEEEeCCCCeEEE
Q 020019 35 THVYHYHSSSFFR-ECAKWDDSGRRFIVSFLDGGIGQVAVPDDYPPGTVLEEVTLVKDLELTGNGSLGLVLDHPRNRLLV 113 (332)
Q Consensus 35 ~~~i~~~~~~~~p-egia~d~~g~~~~~~~~~g~I~~vd~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~vd~~~g~l~v 113 (332)
|+...+.+..... .. ++.+|+++++...++.|..+|..+++. .. ++.... .....|++.++ +.|+.
T Consensus 3 p~~~tL~GH~~~vitc--~~~~~~~l~tgs~Dg~i~vWd~~~~~~----~~--~l~~H~----~~V~~l~~s~~-~~l~s 69 (355)
T d1nexb2 3 PQRTTLRGHMTSVITC--LQFEDNYVITGADDKMIRVYDSINKKF----LL--QLSGHD----GGVWALKYAHG-GILVS 69 (355)
T ss_dssp CEEEEEECCSSSCEEE--EEEETTEEEEEETTTEEEEEETTTTEE----EE--EEECCS----SCEEEEEEETT-TEEEE
T ss_pred CCcEEECCcCCCcEEE--EEECCCEEEEEeCCCeEEEEECCCCcE----EE--EEECCC----CCEEEEEEcCC-CEEEE
Confidence 4555565543221 23 444578777777789999999887652 11 332111 25688999885 76655
Q ss_pred EEeCcCCCccceEEEEECCCCcEEEEEecCCCCCCCCCccceEECCCCcEEEEeCCCCeEEEEcCCCceE-EEecC----
Q 020019 114 VAADVFGNKYSAVAAYDLSTWNRLFLTQLSGPSDGKSCADDVTVDAEGNAYVTDVTGSKIWKVGVKGEFL-SIISS---- 188 (332)
Q Consensus 114 ~~~~~~~~~~~~l~~~d~~~g~~~~~~~l~~~~~~~~~~ndiavd~dG~lyvtd~~~~~I~~v~~~g~~~-~~~~~---- 188 (332)
+.. .+.+..|+....+........ ............+++...++-+..+.|..++...... .....
T Consensus 70 ~s~------D~~i~iw~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~d~~i~iw~~~~~~~~~~~~~~~~~ 140 (355)
T d1nexb2 70 GST------DRTVRVWDIKKGCCTHVFEGH---NSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKESSVPDHGEEHDY 140 (355)
T ss_dssp EET------TCCEEEEETTTTEEEEEECCC---SSCEEEEEEEEETTEEEEEEEETTSEEEEEECCC-----------CC
T ss_pred Eec------ccccccccccccccccccccc---cccccccccccccccceeeeecCCCcEEEEEccCCceecccccccee
Confidence 544 356888999877665443321 1112233345566666666666677776666542211 10000
Q ss_pred -----CCCCCcc-cccCcc-ccCeEEEccCceEEEEeCCCCeEEEEeCCCCCCccceeEEEEecCCCCCCCCeEEEeCCC
Q 020019 189 -----PLFTPKE-WYKNLV-GLNGIVYHPDGFLIVIHTFSGNLFKIDIVDGVGEGEEIKLIRVAGGPLSFGDGLELLSPT 261 (332)
Q Consensus 189 -----~~~~~p~-~~~~~~-~~nGi~~~~dG~Lyva~~~~~~i~~id~~~~~~~~~~~~~v~~~g~~~~~pdGi~~~~dG 261 (332)
....... ...... ...-....+++.+.+.....+.|..++..+++ .+..... .......+.+++++
T Consensus 141 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~d~~i~~~d~~~~~----~~~~~~~---~~~~~~~~~~~~~~ 213 (355)
T d1nexb2 141 PLVFHTPEENPYFVGVLRGHMASVRTVSGHGNIVVSGSYDNTLIVWDVAQMK----CLYILSG---HTDRIYSTIYDHER 213 (355)
T ss_dssp CEEESCTTTCTTEEEEEECCSSCEEEEEEETTEEEEEETTSCEEEEETTTTE----EEEEECC---CSSCEEEEEEETTT
T ss_pred ccceeccccccceeeeeeeccccccccccccceeeeecccceeeeeeccccc----ceeeeec---cccccccccccccc
Confidence 0000000 000000 11123445567555555566778888887651 2322221 22344567777777
Q ss_pred eEEEEe-C-CceEEEEcCCC
Q 020019 262 KLVVAG-N-PSARLVESSDG 279 (332)
Q Consensus 262 ~l~va~-~-~~~~~v~~~dg 279 (332)
..+++. . ...++....++
T Consensus 214 ~~~~~~~~d~~i~i~d~~~~ 233 (355)
T d1nexb2 214 KRCISASMDTTIRIWDLENG 233 (355)
T ss_dssp TEEEEEETTSCEEEEETTTC
T ss_pred eeeecccccceEEeeecccc
Confidence 666554 2 33444445555
|
| >d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: F-box/WD repeat-containing protein 7, FBXW7 species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.78 E-value=0.095 Score=43.24 Aligned_cols=155 Identities=19% Similarity=0.144 Sum_probs=88.4
Q ss_pred ceEEcCCCCEEEEEecCCeEEEEECCCCCCCccceeeeEEecccCcCCCccceEEEeCCCCeEEEEEeCcCCCccceEEE
Q 020019 49 CAKWDDSGRRFIVSFLDGGIGQVAVPDDYPPGTVLEEVTLVKDLELTGNGSLGLVLDHPRNRLLVVAADVFGNKYSAVAA 128 (332)
Q Consensus 49 gia~d~~g~~~~~~~~~g~I~~vd~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~vd~~~g~l~v~~~~~~~~~~~~l~~ 128 (332)
......+++.+++...++.|..++...++. .. .+.... .....+..++ +.++.+.. .+.+..
T Consensus 180 ~~~~~~~~~~l~s~~~dg~i~~~d~~~~~~----~~--~~~~~~----~~v~~~~~~~--~~l~s~s~------d~~i~i 241 (342)
T d2ovrb2 180 VYSLQFDGIHVVSGSLDTSIRVWDVETGNC----IH--TLTGHQ----SLTSGMELKD--NILVSGNA------DSTVKI 241 (342)
T ss_dssp EEEEEECSSEEEEEETTSCEEEEETTTCCE----EE--EECCCC----SCEEEEEEET--TEEEEEET------TSCEEE
T ss_pred cccccCCCCEEEEEeCCCeEEEeeccccee----ee--Eecccc----cceeEEecCC--CEEEEEcC------CCEEEE
Confidence 344555677777767789999999876552 11 221111 1345666664 44444443 356889
Q ss_pred EECCCCcEEEEEecCCCCCCCCCccceEECCCCcEEEEeCCCCeEEEEcCC-CceEEEecCCCCCCcccccCccccCeEE
Q 020019 129 YDLSTWNRLFLTQLSGPSDGKSCADDVTVDAEGNAYVTDVTGSKIWKVGVK-GEFLSIISSPLFTPKEWYKNLVGLNGIV 207 (332)
Q Consensus 129 ~d~~~g~~~~~~~l~~~~~~~~~~ndiavd~dG~lyvtd~~~~~I~~v~~~-g~~~~~~~~~~~~~p~~~~~~~~~nGi~ 207 (332)
||....+....... +....... .++..+++++++-+..+.|..++.. |+....+...... ......+.++
T Consensus 242 wd~~~~~~~~~~~~--~~~~~~~~--~~~~~~~~~~~s~s~Dg~i~iwd~~tg~~i~~~~~~~~~-----~~~~~v~~v~ 312 (342)
T d2ovrb2 242 WDIKTGQCLQTLQG--PNKHQSAV--TCLQFNKNFVITSSDDGTVKLWDLKTGEFIRNLVTLESG-----GSGGVVWRIR 312 (342)
T ss_dssp EETTTCCEEEEECS--TTSCSSCE--EEEEECSSEEEEEETTSEEEEEETTTCCEEEEEEECTTG-----GGTCEEEEEE
T ss_pred Eecccccccccccc--cceeeece--eecccCCCeeEEEcCCCEEEEEECCCCCEEEEEecccCC-----CCCCCEEEEE
Confidence 99988776544332 11111233 3344456788887788999999865 6654332211110 0112357899
Q ss_pred EccCceEEEEeCCCC----eEEEEeCC
Q 020019 208 YHPDGFLIVIHTFSG----NLFKIDIV 230 (332)
Q Consensus 208 ~~~dG~Lyva~~~~~----~i~~id~~ 230 (332)
++++|.+.++-..+| +|+.+|.+
T Consensus 313 ~s~~~~~la~g~~dGt~~~~l~~~Df~ 339 (342)
T d2ovrb2 313 ASNTKLVCAVGSRNGTEETKLLVLDFD 339 (342)
T ss_dssp ECSSEEEEEEECSSSSSCCEEEEEECC
T ss_pred ECCCCCEEEEEeCCCCCeeEEEEEeCC
Confidence 999996655555444 46666654
|
| >d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Antiviral protein Ski8 (Ski8p) species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=96.60 E-value=0.049 Score=47.54 Aligned_cols=151 Identities=14% Similarity=0.166 Sum_probs=91.3
Q ss_pred cccceEEcCCCCEEEEEecCCeEEEEECCCCCCCccceeeeEEecccCcCC--CccceEEEeCCCCeEEEEEeCcCCCcc
Q 020019 46 FRECAKWDDSGRRFIVSFLDGGIGQVAVPDDYPPGTVLEEVTLVKDLELTG--NGSLGLVLDHPRNRLLVVAADVFGNKY 123 (332)
Q Consensus 46 ~pegia~d~~g~~~~~~~~~g~I~~vd~~~~~~~~~~~~~~~~~~~~~~~~--~~~~gi~vd~~~g~l~v~~~~~~~~~~ 123 (332)
+...+++.++| ++++...++.|..++..+++. .. .+.....+.+ ..+..++++|+ |++.++..+.. ..
T Consensus 186 ~~~~v~~s~dg-~lasgs~Dg~i~iwd~~~~~~----~~--~~~~~~~l~~h~~~V~~l~~spd-g~~l~sgs~D~--t~ 255 (393)
T d1sq9a_ 186 FATSVDISERG-LIATGFNNGTVQISELSTLRP----LY--NFESQHSMINNSNSIRSVKFSPQ-GSLLAIAHDSN--SF 255 (393)
T ss_dssp CCCEEEECTTS-EEEEECTTSEEEEEETTTTEE----EE--EEECCC---CCCCCEEEEEECSS-TTEEEEEEEET--TE
T ss_pred cEEEEEECCCC-EEEEEeCCCcEEEEeeccccc----cc--ccccccccccccceEEEcccccc-cceeeeecCCC--Cc
Confidence 45678999987 455557789999999886652 11 1211111111 25688999997 66555543211 12
Q ss_pred ceEEEEECCCCcEEEEEecCCCC-C------C-CCCccceEECCCCcEEEEeCCCCeEEEEcCC-CceEEEecCCCCCCc
Q 020019 124 SAVAAYDLSTWNRLFLTQLSGPS-D------G-KSCADDVTVDAEGNAYVTDVTGSKIWKVGVK-GEFLSIISSPLFTPK 194 (332)
Q Consensus 124 ~~l~~~d~~~g~~~~~~~l~~~~-~------~-~~~~ndiavd~dG~lyvtd~~~~~I~~v~~~-g~~~~~~~~~~~~~p 194 (332)
..+..||.++++........... . + ....+.+++.|+|++.++-+..+.|...|.+ |+....+....- +
T Consensus 256 ~~i~lwd~~~g~~~~~l~~~~~~~~~~~~~~gH~~~V~~l~fspd~~~l~S~s~D~~v~vWd~~~g~~~~~l~gH~~--~ 333 (393)
T d1sq9a_ 256 GCITLYETEFGERIGSLSVPTHSSQASLGEFAHSSWVMSLSFNDSGETLCSAGWDGKLRFWDVKTKERITTLNMHCD--D 333 (393)
T ss_dssp EEEEEEETTTCCEEEEECBC--------CCBSBSSCEEEEEECSSSSEEEEEETTSEEEEEETTTTEEEEEEECCGG--G
T ss_pred ceeeecccccceeeeeeccccccccceeeeecccCceeeeccCCCCCeeEEECCCCEEEEEECCCCCEEEEECCcCC--c
Confidence 35778999998876654321100 0 0 1345779999999999999999999998865 655443321110 0
Q ss_pred ccccCccccCeEEEccCc
Q 020019 195 EWYKNLVGLNGIVYHPDG 212 (332)
Q Consensus 195 ~~~~~~~~~nGi~~~~dG 212 (332)
-......++++++|
T Consensus 334 ----v~~~~~~~~~~~~~ 347 (393)
T d1sq9a_ 334 ----IEIEEDILAVDEHG 347 (393)
T ss_dssp ----CSSGGGCCCBCTTS
T ss_pred ----ccCCccEEEECCCC
Confidence 01234567888888
|
| >d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=96.49 E-value=0.16 Score=41.43 Aligned_cols=188 Identities=14% Similarity=0.161 Sum_probs=103.1
Q ss_pred ccccceEEcCCCCEEEEEecCCeEEEEECCCCCCCccceeeeEEecccCcCCCccceEEEeCCCCeEEEEEeCcCCCccc
Q 020019 45 FFRECAKWDDSGRRFIVSFLDGGIGQVAVPDDYPPGTVLEEVTLVKDLELTGNGSLGLVLDHPRNRLLVVAADVFGNKYS 124 (332)
Q Consensus 45 ~~pegia~d~~g~~~~~~~~~g~I~~vd~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~vd~~~g~l~v~~~~~~~~~~~ 124 (332)
..|..+.+.+++..++.. ..+.+..++..+++. .. .+. . .....++.++...+.+...+ ..
T Consensus 81 ~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~----~~--~~~--~-----~~~~~~~~~~~~~~~v~~~~-----~~ 141 (287)
T d1pgua2 81 SQPKVASANNDGFTAVLT-NDDDLLILQSFTGDI----IK--SVR--L-----NSPGSAVSLSQNYVAVGLEE-----GN 141 (287)
T ss_dssp SCEEEEEECSSSEEEEEE-TTSEEEEEETTTCCE----EE--EEE--C-----SSCEEEEEECSSEEEEEETT-----TS
T ss_pred cceeeeeeccCCceEEEe-ecccceeeeccceee----ee--ecc--c-----cceeeeeeccCcceeeeccc-----cc
Confidence 356777888877655544 356677777665542 11 111 1 11123444443455555432 23
Q ss_pred eEEEEECCCCcEEEEEecCCCCCCCCCccceEECCCCcEEEEeCCCCeEEEEcCCCceEEEecCCCCCCcccccCccccC
Q 020019 125 AVAAYDLSTWNRLFLTQLSGPSDGKSCADDVTVDAEGNAYVTDVTGSKIWKVGVKGEFLSIISSPLFTPKEWYKNLVGLN 204 (332)
Q Consensus 125 ~l~~~d~~~g~~~~~~~l~~~~~~~~~~ndiavd~dG~lyvtd~~~~~I~~v~~~g~~~~~~~~~~~~~p~~~~~~~~~n 204 (332)
.+..|+....+.. ..+..+. ......++++|+|..+++-...+.|..++......... .+.. .....+
T Consensus 142 ~v~~~~~~~~~~~--~~~~~~~--~~~v~~~~~s~~~~~l~~g~~dg~i~i~d~~~~~~~~~---~~~~-----h~~~v~ 209 (287)
T d1pgua2 142 TIQVFKLSDLEVS--FDLKTPL--RAKPSYISISPSETYIAAGDVMGKILLYDLQSREVKTS---RWAF-----RTSKIN 209 (287)
T ss_dssp CEEEEETTEEEEE--EECSSCC--SSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEC---CSCC-----CSSCEE
T ss_pred eeeeeecccccee--eeeeecc--CCceeEEEeccCccccccccccccccceeecccccccc---cccc-----cccccc
Confidence 5778888643332 2332111 24577899999998777777788888888764322211 1100 011234
Q ss_pred eEEEcc----------CceEEEEeCCCCeEEEEeCCCCCCccceeEEEEecCCCCCCCCeEEEeCCCeEEEEeCC
Q 020019 205 GIVYHP----------DGFLIVIHTFSGNLFKIDIVDGVGEGEEIKLIRVAGGPLSFGDGLELLSPTKLVVAGNP 269 (332)
Q Consensus 205 Gi~~~~----------dG~Lyva~~~~~~i~~id~~~~~~~~~~~~~v~~~g~~~~~pdGi~~~~dG~l~va~~~ 269 (332)
.++++| ++.++++-...++|+.++++.+. ..++ . .. .......++++.++++|+.+...
T Consensus 210 ~~~~~p~~~~~~~~~~~~~~l~sgs~D~~i~iw~~~~~~---~~~~-~-~~-~h~~~V~~v~~~~~~~l~s~g~D 278 (287)
T d1pgua2 210 AISWKPAEKGANEEEIEEDLVATGSLDTNIFIYSVKRPM---KIIK-A-LN-AHKDGVNNLLWETPSTLVSSGAD 278 (287)
T ss_dssp EEEECCCC------CCSCCEEEEEETTSCEEEEESSCTT---CCEE-E-TT-SSTTCEEEEEEEETTEEEEEETT
T ss_pred eeeecccccccccccCCCCeeEeecCCCeEEEEECCCCC---eEEE-E-eC-CCCCCeEEEEECCCCEEEEEECC
Confidence 566654 44455555667788888877541 1222 1 22 23345678888888887666543
|
| >d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: Cell cycle arrest protein BUB3 domain: Cell cycle arrest protein BUB3 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=95.86 E-value=0.35 Score=39.37 Aligned_cols=165 Identities=7% Similarity=-0.023 Sum_probs=90.2
Q ss_pred cccceEEcCCCCEEEEEecCCeEEEEECCCCCCCccceeeeEEecccCcCCCccceEEEeCCCCeEEEEEeCcCCCccce
Q 020019 46 FRECAKWDDSGRRFIVSFLDGGIGQVAVPDDYPPGTVLEEVTLVKDLELTGNGSLGLVLDHPRNRLLVVAADVFGNKYSA 125 (332)
Q Consensus 46 ~pegia~d~~g~~~~~~~~~g~I~~vd~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~vd~~~g~l~v~~~~~~~~~~~~ 125 (332)
...+++|+|+++++++...++.|..++...+... . .+....+- ...+..+++.++.+.++++.. ..+.
T Consensus 13 ~I~~l~fsp~~~~L~s~s~Dg~v~iwd~~~~~~~---~---~~~~~~~h-~~~V~~v~f~~~~~~~l~sg~-----~d~~ 80 (342)
T d1yfqa_ 13 YISDIKIIPSKSLLLITSWDGSLTVYKFDIQAKN---V---DLLQSLRY-KHPLLCCNFIDNTDLQIYVGT-----VQGE 80 (342)
T ss_dssp CEEEEEEEGGGTEEEEEETTSEEEEEEEETTTTE---E---EEEEEEEC-SSCEEEEEEEESSSEEEEEEE-----TTSC
T ss_pred CEEEEEEeCCCCEEEEEECCCeEEEEEccCCCcc---e---EEEEecCC-CCCEEEEEEeCCCCCEEEEcc-----cccc
Confidence 4568999999998888777898888876544320 1 22211110 124678898875455444433 1356
Q ss_pred EEEEECCCCcEEEEEecCCCCCCCCCccceEECCCCcEEEEeCCCCeEEEEcCCC--c-eEEEecCCCCCCcccccCccc
Q 020019 126 VAAYDLSTWNRLFLTQLSGPSDGKSCADDVTVDAEGNAYVTDVTGSKIWKVGVKG--E-FLSIISSPLFTPKEWYKNLVG 202 (332)
Q Consensus 126 l~~~d~~~g~~~~~~~l~~~~~~~~~~ndiavd~dG~lyvtd~~~~~I~~v~~~g--~-~~~~~~~~~~~~p~~~~~~~~ 202 (332)
+..|+...+......... ...........+++..+++....+.+...|... . ........... ....
T Consensus 81 v~~w~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~wd~~~~~~~~~~~~~~~~~~------~~~~ 150 (342)
T d1yfqa_ 81 ILKVDLIGSPSFQALTNN----EANLGICRICKYGDDKLIAASWDGLIEVIDPRNYGDGVIAVKNLNSNN------TKVK 150 (342)
T ss_dssp EEEECSSSSSSEEECBSC----CCCSCEEEEEEETTTEEEEEETTSEEEEECHHHHTTBCEEEEESCSSS------SSSC
T ss_pred eeeeeccccccccccccc----ccccccccccccccccccccccccccceeeccccccceeeeccccccc------ccce
Confidence 888998876654432221 111222233344456777777777777776431 1 11111111000 1122
Q ss_pred cCeEEEccCceEEEEeCCCCeEEEEeCCCC
Q 020019 203 LNGIVYHPDGFLIVIHTFSGNLFKIDIVDG 232 (332)
Q Consensus 203 ~nGi~~~~dG~Lyva~~~~~~i~~id~~~~ 232 (332)
...+.+.+++...+.-...+.|..+++...
T Consensus 151 ~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~ 180 (342)
T d1yfqa_ 151 NKIFTMDTNSSRLIVGMNNSQVQWFRLPLC 180 (342)
T ss_dssp CCEEEEEECSSEEEEEESTTEEEEEESSCC
T ss_pred eeeeeeeccCCceeeecCCCcEEEEecccC
Confidence 345667777755555556778888887754
|
| >d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: F-box/WD repeat-containing protein 7, FBXW7 species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.83 E-value=0.36 Score=39.39 Aligned_cols=125 Identities=13% Similarity=0.104 Sum_probs=72.2
Q ss_pred cceEEEEECCCCcEEEEEecCCCCCCCCCccceEECCCCcEEEEeCCCCeEEEEcCCC-ceEEEecCCCCCCcccccCcc
Q 020019 123 YSAVAAYDLSTWNRLFLTQLSGPSDGKSCADDVTVDAEGNAYVTDVTGSKIWKVGVKG-EFLSIISSPLFTPKEWYKNLV 201 (332)
Q Consensus 123 ~~~l~~~d~~~g~~~~~~~l~~~~~~~~~~ndiavd~dG~lyvtd~~~~~I~~v~~~g-~~~~~~~~~~~~~p~~~~~~~ 201 (332)
.+.+..||.+.++........ ......+. ++++++++-+..+.|..++... +....+..... .
T Consensus 196 dg~i~~~d~~~~~~~~~~~~~-----~~~v~~~~--~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~~~-------~-- 259 (342)
T d2ovrb2 196 DTSIRVWDVETGNCIHTLTGH-----QSLTSGME--LKDNILVSGNADSTVKIWDIKTGQCLQTLQGPNK-------H-- 259 (342)
T ss_dssp TSCEEEEETTTCCEEEEECCC-----CSCEEEEE--EETTEEEEEETTSCEEEEETTTCCEEEEECSTTS-------C--
T ss_pred CCeEEEeecccceeeeEeccc-----ccceeEEe--cCCCEEEEEcCCCEEEEEecccccccccccccce-------e--
Confidence 356889999988776543321 12333444 4456778777788888888663 33332221110 0
Q ss_pred ccCeEEEccCceEEEEeCCCCeEEEEeCCCCCCccceeEEEEecC--CCCCCCCeEEEeCCCeEEEEe
Q 020019 202 GLNGIVYHPDGFLIVIHTFSGNLFKIDIVDGVGEGEEIKLIRVAG--GPLSFGDGLELLSPTKLVVAG 267 (332)
Q Consensus 202 ~~nGi~~~~dG~Lyva~~~~~~i~~id~~~~~~~~~~~~~v~~~g--~~~~~pdGi~~~~dG~l~va~ 267 (332)
...-.++..++.++++-...++|..+++.+++ .++.+.... ........+++.++|.+++++
T Consensus 260 ~~~~~~~~~~~~~~~s~s~Dg~i~iwd~~tg~----~i~~~~~~~~~~~~~~v~~v~~s~~~~~la~g 323 (342)
T d2ovrb2 260 QSAVTCLQFNKNFVITSSDDGTVKLWDLKTGE----FIRNLVTLESGGSGGVVWRIRASNTKLVCAVG 323 (342)
T ss_dssp SSCEEEEEECSSEEEEEETTSEEEEEETTTCC----EEEEEEECTTGGGTCEEEEEEECSSEEEEEEE
T ss_pred eeceeecccCCCeeEEEcCCCEEEEEECCCCC----EEEEEecccCCCCCCCEEEEEECCCCCEEEEE
Confidence 11223444556455556677889999998773 455554320 111234578888888877775
|
| >d2bgra1 b.70.3.1 (A:39-508) Dipeptidyl peptidase IV/CD26, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: DPP6 N-terminal domain-like family: DPP6 N-terminal domain-like domain: Dipeptidyl peptidase IV/CD26, N-terminal domain species: Pig (Sus scrofa) [TaxId: 9823]
Probab=95.71 E-value=0.069 Score=47.75 Aligned_cols=156 Identities=12% Similarity=0.104 Sum_probs=86.6
Q ss_pred ccceEEcCCCCEEEEEecCCeEEEEECCCCCCCccceeeeEEecccCcC--CCccceEEEeCCCCe-EEEEEeCc--C-C
Q 020019 47 RECAKWDDSGRRFIVSFLDGGIGQVAVPDDYPPGTVLEEVTLVKDLELT--GNGSLGLVLDHPRNR-LLVVAADV--F-G 120 (332)
Q Consensus 47 pegia~d~~g~~~~~~~~~g~I~~vd~~~~~~~~~~~~~~~~~~~~~~~--~~~~~gi~vd~~~g~-l~v~~~~~--~-~ 120 (332)
..++.|.+++..++. .++.|++++..+++. . .++....+. +....+..+.|| |+ |.+..... . .
T Consensus 19 ~~~~~W~~d~~~~~~--~~~~~~~~~~~t~~~-----~--~~~~~~~~~~~~~~i~~~~~SpD-g~~i~~~~~~~~~~r~ 88 (470)
T d2bgra1 19 LYSLRWISDHEYLYK--QENNILVFNAEYGNS-----S--VFLENSTFDEFGHSINDYSISPD-GQFILLEYNYVKQWRH 88 (470)
T ss_dssp CCCCEECSSSEEEEE--SSSCEEEEETTTCCE-----E--EEECTTTTTTSSSCCCEEEECTT-SSEEEEEEEEEECSSS
T ss_pred ccCCEeCCCCEEEEE--cCCcEEEEECCCCCE-----E--EEEchhhhhhccCccceeEECCC-CCEEEEEECCcceeee
Confidence 346778888875553 467899999988762 1 334322222 135678899997 65 33332211 0 1
Q ss_pred CccceEEEEECCCCcEEEEEecCCCCCCCCCccceEECCCCc-EEEEeCCCCeEEEEcCC-CceEEEecCCCCC-----C
Q 020019 121 NKYSAVAAYDLSTWNRLFLTQLSGPSDGKSCADDVTVDAEGN-AYVTDVTGSKIWKVGVK-GEFLSIISSPLFT-----P 193 (332)
Q Consensus 121 ~~~~~l~~~d~~~g~~~~~~~l~~~~~~~~~~ndiavd~dG~-lyvtd~~~~~I~~v~~~-g~~~~~~~~~~~~-----~ 193 (332)
+..+.+++||+++++.. .+.. .......+.+.|||+ +.+. ..+.++..+.. |+..+........ .
T Consensus 89 s~~~~~~l~d~~~~~~~---~l~~---~~~~~~~~~~SPDG~~ia~~--~~~~l~~~~~~~g~~~~~t~~~~~~~~~~g~ 160 (470)
T d2bgra1 89 SYTASYDIYDLNKRQLI---TEER---IPNNTQWVTWSPVGHKLAYV--WNNDIYVKIEPNLPSYRITWTGKEDIIYNGI 160 (470)
T ss_dssp CEEEEEEEEETTTTEEC---CSSC---CCTTEEEEEECSSTTCEEEE--ETTEEEEESSTTSCCEECCSCCBTTTEEESB
T ss_pred ccCceEEEEECCCCccc---cccc---CCccccccccccCcceeeEe--ecccceEEECCCCceeeeeeccCCCcccccc
Confidence 23457889999987753 2321 123445678899986 3332 23567777765 3333322111000 0
Q ss_pred ccc---ccCccccCeEEEccCc-eEEEEeCC
Q 020019 194 KEW---YKNLVGLNGIVYHPDG-FLIVIHTF 220 (332)
Q Consensus 194 p~~---~~~~~~~nGi~~~~dG-~Lyva~~~ 220 (332)
+.+ ........++.|+||| .|.+....
T Consensus 161 ~d~~~~~~~~~~~~~~~wSPDGk~ia~~~~d 191 (470)
T d2bgra1 161 TDWVYEEEVFSAYSALWWSPNGTFLAYAQFN 191 (470)
T ss_dssp CCHHHHHHTSSSSBCEEECTTSSEEEEEEEE
T ss_pred cceeeeeeecCCccccEECCCCCccceeEec
Confidence 000 0122345789999999 77666543
|
| >d1h6la_ b.68.3.1 (A:) Thermostable phytase (3-phytase) {Bacillus amyloliquefaciens [TaxId: 1390]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Thermostable phytase (3-phytase) family: Thermostable phytase (3-phytase) domain: Thermostable phytase (3-phytase) species: Bacillus amyloliquefaciens [TaxId: 1390]
Probab=95.49 E-value=0.22 Score=43.40 Aligned_cols=135 Identities=14% Similarity=0.211 Sum_probs=73.9
Q ss_pred CCCCcEEEEeCCCCeEEEEcCCCceEEEecCCCCCCcccccCccccCeEE------EccCc--eEEEEeCC--CCeE--E
Q 020019 158 DAEGNAYVTDVTGSKIWKVGVKGEFLSIISSPLFTPKEWYKNLVGLNGIV------YHPDG--FLIVIHTF--SGNL--F 225 (332)
Q Consensus 158 d~dG~lyvtd~~~~~I~~v~~~g~~~~~~~~~~~~~p~~~~~~~~~nGi~------~~~dG--~Lyva~~~--~~~i--~ 225 (332)
+|+..+.++....+.|+.++.+|+.+..+... .+|.|. +..+. .+++++.. +.+| |
T Consensus 37 ~p~~SlI~gTdK~~Gl~vYdL~G~~l~~~~~G------------r~NNVDvr~~~~l~~~~~di~vasnR~~~~~~l~~~ 104 (353)
T d1h6la_ 37 NPQNSKLITTNKKSGLAVYSLEGKMLHSYHTG------------KLNNVDIRYDFPLNGKKVDIAAASNRSEGKNTIEIY 104 (353)
T ss_dssp CGGGCEEEEEETTSCCEEEETTCCEEEECCSS------------CEEEEEEEEEEEETTEEEEEEEEEECCTTTCEEEEE
T ss_pred CcCccEEEEEcCcCCEEEEcCCCcEEEecccC------------CcCccccccccccCCcceEEEEEeCCcCcceeEEEE
Confidence 44555555444455699999999988765322 234444 33333 34555554 2344 6
Q ss_pred EEeCCCCCCccceeEEEEecC----CCCCCCCeEEE--eCC-CeEEEE--eCCc-eE--EE-EcCCCceEEEEEeeecCC
Q 020019 226 KIDIVDGVGEGEEIKLIRVAG----GPLSFGDGLEL--LSP-TKLVVA--GNPS-AR--LV-ESSDGWETAAVVAKFSGP 292 (332)
Q Consensus 226 ~id~~~~~~~~~~~~~v~~~g----~~~~~pdGi~~--~~d-G~l~va--~~~~-~~--~v-~~~dg~~~~~~~~~~~~~ 292 (332)
.++.... .+..+.... ..+..+.|+|+ ++. |.+|+. +... .. .+ ...++....++...+..+
T Consensus 105 ~id~~~~-----~l~~~~~~~~p~~~~~~~vYGlc~y~~~~~g~~~afv~~k~G~v~q~~l~~~~~g~v~~~lvr~f~~~ 179 (353)
T d1h6la_ 105 AIDGKNG-----TLQSITDPNRPIASAIDEVYGFSLYHSQKTGKYYAMVTGKEGEFEQYELNADKNGYISGKKVRAFKMN 179 (353)
T ss_dssp EEETTTT-----EEEECSCSSSCEECSSSSCCCEEEEECTTTCCEEEEEECSSSEEEEEEEEECTTSSEEEEEEEEEECS
T ss_pred EecCccc-----ccccccccccccccccCcceEEEEEecCCCCeEEEEEEcCCceEEEEEEEcCCCCceeeEeeeccCCC
Confidence 6665544 333332110 12346889999 554 766555 3222 21 12 234554555666666543
Q ss_pred CcccceEEEEE--CCeEEEEE
Q 020019 293 VHRLATAATVK--DGRVYLNH 311 (332)
Q Consensus 293 ~~~~pt~va~~--~g~lyv~~ 311 (332)
..+.+|.++ .++|||+.
T Consensus 180 --~q~EGCVvDde~~~LyisE 198 (353)
T d1h6la_ 180 --SQTEGMAADDEYGSLYIAE 198 (353)
T ss_dssp --SCEEEEEEETTTTEEEEEE
T ss_pred --CccceEEEeCCCCcEEEec
Confidence 356788884 58999963
|
| >d2ad6a1 b.70.1.1 (A:1-571) Methanol dehydrogenase, heavy chain {Methylophilus methylotrophus, w3a1 [TaxId: 17]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: Quinoprotein alcohol dehydrogenase-like family: Quinoprotein alcohol dehydrogenase-like domain: Methanol dehydrogenase, heavy chain species: Methylophilus methylotrophus, w3a1 [TaxId: 17]
Probab=95.44 E-value=0.97 Score=41.63 Aligned_cols=54 Identities=20% Similarity=0.315 Sum_probs=36.6
Q ss_pred EEEccCceEEEEeCCCCeEEEEeCCCCCCccceeEEEEecCCCCCCCCeEEEeCCCeEEEE
Q 020019 206 IVYHPDGFLIVIHTFSGNLFKIDIVDGVGEGEEIKLIRVAGGPLSFGDGLELLSPTKLVVA 266 (332)
Q Consensus 206 i~~~~dG~Lyva~~~~~~i~~id~~~~~~~~~~~~~v~~~g~~~~~pdGi~~~~dG~l~va 266 (332)
.....+|.+|+. ..+++++.+|.++| +.+=++.+++.....| |.+..||+.||+
T Consensus 470 ~l~TagglVf~G-~~dg~l~A~Da~tG----e~lW~~~l~~~~~a~P--~ty~~dGkqYi~ 523 (571)
T d2ad6a1 470 TLYTKGGLVWYA-TLDGYLKALDNKDG----KELWNFKMPSGGIGSP--MTYSFKGKQYIG 523 (571)
T ss_dssp CEEETTTEEEEE-CTTSEEEEEETTTC----CEEEEEECSSCCCSCC--EEEEETTEEEEE
T ss_pred eeEecCCEEEEE-CCCCeEEEEECCCC----cEEEEEECCCCceecc--eEEEECCEEEEE
Confidence 334456678876 55788999999988 3565566663233455 666668999986
|
| >d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Cdc4 propeller domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=95.39 E-value=0.55 Score=38.45 Aligned_cols=147 Identities=11% Similarity=0.108 Sum_probs=87.2
Q ss_pred EEcCCCCEEEEEecCCeEEEEECCCCCCCccceeeeEEecccCcCCCccceEEEeCCCCeEEEEEeCcCCCccceEEEEE
Q 020019 51 KWDDSGRRFIVSFLDGGIGQVAVPDDYPPGTVLEEVTLVKDLELTGNGSLGLVLDHPRNRLLVVAADVFGNKYSAVAAYD 130 (332)
Q Consensus 51 a~d~~g~~~~~~~~~g~I~~vd~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~vd~~~g~l~v~~~~~~~~~~~~l~~~d 130 (332)
...+++++++....++.|..++..+++. . .... . .......+.++++...++++.. .+.+..||
T Consensus 166 ~~~~~~~~~~~~~~d~~i~~~d~~~~~~----~---~~~~--~-~~~~~~~~~~~~~~~~~~~~~~------d~~i~i~d 229 (355)
T d1nexb2 166 TVSGHGNIVVSGSYDNTLIVWDVAQMKC----L---YILS--G-HTDRIYSTIYDHERKRCISASM------DTTIRIWD 229 (355)
T ss_dssp EEEEETTEEEEEETTSCEEEEETTTTEE----E---EEEC--C-CSSCEEEEEEETTTTEEEEEET------TSCEEEEE
T ss_pred ccccccceeeeecccceeeeeecccccc----e---eeee--c-cccccccccccccceeeecccc------cceEEeee
Confidence 3445667777776778888888765541 1 1111 1 1124567888887444444443 35688999
Q ss_pred CCCCcEEEEEecCCCCCCCCCccceEECCCCcEEEEeCCCCeEEEEcCCCceEEEecCCCCCCcccccCccccCe-EEEc
Q 020019 131 LSTWNRLFLTQLSGPSDGKSCADDVTVDAEGNAYVTDVTGSKIWKVGVKGEFLSIISSPLFTPKEWYKNLVGLNG-IVYH 209 (332)
Q Consensus 131 ~~~g~~~~~~~l~~~~~~~~~~ndiavd~dG~lyvtd~~~~~I~~v~~~g~~~~~~~~~~~~~p~~~~~~~~~nG-i~~~ 209 (332)
.++++......- . ....+.++++ ++.+++-+..+.|..+|.......+.... ..... .++.
T Consensus 230 ~~~~~~~~~~~~--h---~~~v~~~~~~--~~~l~~~~~dg~i~iwd~~~~~~~~~~~~-----------~~~~~~~~~~ 291 (355)
T d1nexb2 230 LENGELMYTLQG--H---TALVGLLRLS--DKFLVSAAADGSIRGWDANDYSRKFSYHH-----------TNLSAITTFY 291 (355)
T ss_dssp TTTCCEEEEECC--C---SSCCCEEEEC--SSEEEEECTTSEEEEEETTTCCEEEEEEC-----------TTCCCCCEEE
T ss_pred cccccccccccc--c---cccccccccc--cceeeeeecccccccccccccceeccccc-----------CCceEEEEEc
Confidence 998887654432 1 2334567765 45777777788888888764322221111 11122 3456
Q ss_pred cCceEEEEeCCCCeEEEEeCCCC
Q 020019 210 PDGFLIVIHTFSGNLFKIDIVDG 232 (332)
Q Consensus 210 ~dG~Lyva~~~~~~i~~id~~~~ 232 (332)
+++.++++-. .++|..+|++++
T Consensus 292 ~~~~~l~~g~-d~~i~vwd~~tg 313 (355)
T d1nexb2 292 VSDNILVSGS-ENQFNIYNLRSG 313 (355)
T ss_dssp ECSSEEEEEE-TTEEEEEETTTC
T ss_pred CCCCEEEEEe-CCEEEEEECCCC
Confidence 6776666654 578888898877
|
| >d1xfda1 b.70.3.1 (A:127-591) Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: DPP6 N-terminal domain-like family: DPP6 N-terminal domain-like domain: Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.17 E-value=1 Score=40.26 Aligned_cols=158 Identities=12% Similarity=0.097 Sum_probs=76.2
Q ss_pred eEEcCCCCEEEEEecCCeEEEEECCCCCCCccceeeeEEecccCcCCCccceEEEeCCCCeEEEEEeCcC---CCccceE
Q 020019 50 AKWDDSGRRFIVSFLDGGIGQVAVPDDYPPGTVLEEVTLVKDLELTGNGSLGLVLDHPRNRLLVVAADVF---GNKYSAV 126 (332)
Q Consensus 50 ia~d~~g~~~~~~~~~g~I~~vd~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~vd~~~g~l~v~~~~~~---~~~~~~l 126 (332)
+.|.+++..++. ..+|.|++++..+++. ..++....+....+....+.||...+++...... .+..+.+
T Consensus 22 ~~W~~~~~~~~~-~~~g~i~~~~~~~~~~-------~~l~~~~~~~~~~~~~~~~SpD~~~vl~~~~~~~~~r~s~~~~~ 93 (465)
T d1xfda1 22 AKWISDTEFIYR-EQKGTVRLWNVETNTS-------TVLIEGKKIESLRAIRYEISPDREYALFSYNVEPIYQHSYTGYY 93 (465)
T ss_dssp CCBSSSSCBCCC-CSSSCEEEBCGGGCCC-------EEEECTTTTTTTTCSEEEECTTSSEEEEEESCCCCSSSCCCSEE
T ss_pred CEEeCCCcEEEE-eCCCcEEEEECCCCCE-------EEEEcCccccccccceeEECCCCCeEEEEEcccceeEeeccccE
Confidence 456666654442 3356788888877652 1344322221124556778897344444432111 1234568
Q ss_pred EEEECCCCcEEEEEecCCCCCCCCCccceEECCCCc-E-EEEeCCCCeEEEEcCCC-ceEEEecCCCCC-----Cccc--
Q 020019 127 AAYDLSTWNRLFLTQLSGPSDGKSCADDVTVDAEGN-A-YVTDVTGSKIWKVGVKG-EFLSIISSPLFT-----PKEW-- 196 (332)
Q Consensus 127 ~~~d~~~g~~~~~~~l~~~~~~~~~~ndiavd~dG~-l-yvtd~~~~~I~~v~~~g-~~~~~~~~~~~~-----~p~~-- 196 (332)
++||.++++....... .......+-..+.|||+ + |+. .+.||..+..+ +..++.....-. .+.+
T Consensus 94 ~i~d~~~~~~~~l~~~---~~~~~~l~~~~wSPDG~~iafv~---~~nl~~~~~~~~~~~~lt~~g~~~~i~nG~~d~vy 167 (465)
T d1xfda1 94 VLSKIPHGDPQSLDPP---EVSNAKLQYAGWGPKGQQLIFIF---ENNIYYCAHVGKQAIRVVSTGKEGVIYNGLSDWLY 167 (465)
T ss_dssp EEEESSSCCCEECCCT---TCCSCCCSBCCBCSSTTCEEEEE---TTEEEEESSSSSCCEEEECCCBTTTEEEEECCHHH
T ss_pred EEEEccCCceeeccCc---cCCccccceeeeccCCceEEEEe---cceEEEEecCCCceEEEecccCcceeeccccchhh
Confidence 8899998876543222 11112333355566653 2 333 24455554432 222221111000 0000
Q ss_pred ccC-ccccCeEEEccCc-eEEEEeCCC
Q 020019 197 YKN-LVGLNGIVYHPDG-FLIVIHTFS 221 (332)
Q Consensus 197 ~~~-~~~~nGi~~~~dG-~Lyva~~~~ 221 (332)
... .....++.|+||| +|.+...+.
T Consensus 168 eee~~~~~~a~~WSPDgk~iaf~~~D~ 194 (465)
T d1xfda1 168 EEEILKTHIAHWWSPDGTRLAYAAIND 194 (465)
T ss_dssp HHTTSSSSEEEEECTTSSEEEEEEEEC
T ss_pred hhhhccccceEEECCCCCeEEEEEecc
Confidence 001 1234688899999 888775443
|
| >d1flga_ b.70.1.1 (A:) Ethanol dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: Quinoprotein alcohol dehydrogenase-like family: Quinoprotein alcohol dehydrogenase-like domain: Ethanol dehydrogenase species: Pseudomonas aeruginosa [TaxId: 287]
Probab=95.08 E-value=1.2 Score=41.02 Aligned_cols=104 Identities=14% Similarity=0.034 Sum_probs=64.4
Q ss_pred cceEEEeCCCCeEEEEEeCcC----------C-----------------CccceEEEEECCCCcEEEEEecCCCCCCCCC
Q 020019 99 SLGLVLDHPRNRLLVVAADVF----------G-----------------NKYSAVAAYDLSTWNRLFLTQLSGPSDGKSC 151 (332)
Q Consensus 99 ~~gi~vd~~~g~l~v~~~~~~----------~-----------------~~~~~l~~~d~~~g~~~~~~~l~~~~~~~~~ 151 (332)
-.++++|++++.+|+...+.. . ...+.|..+|+++|+.++..+...| .
T Consensus 414 w~~~a~dp~~g~~yvp~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~G~l~AiD~~TG~i~W~~~~~~p-----~ 488 (582)
T d1flga_ 414 WNPMAYSQDTGLFYVPANHWKEDYWTEEVSYTKGSAYLGMGFRIKRMYDDHVGSLRAMDPVSGKVVWEHKEHLP-----L 488 (582)
T ss_dssp SSCCEECTTTCCEEEEEECEEEEEEECCCCCCTTSCCCCEEEEEEESCSSCSEEEEEECTTTCCEEEEEEESSC-----C
T ss_pred cccceecCCCCceeeeccccccccccccccccccccccccCccccccccCCCCeEEEEcCCCCcEEeecCCCCC-----C
Confidence 357889998888888765411 0 1135789999999999887776432 2
Q ss_pred ccceEECCCCcEEEEeCCCCeEEEEcCC-CceEEEecCCCCCCcccccCccccCeEEEccCceEEEE
Q 020019 152 ADDVTVDAEGNAYVTDVTGSKIWKVGVK-GEFLSIISSPLFTPKEWYKNLVGLNGIVYHPDGFLIVI 217 (332)
Q Consensus 152 ~ndiavd~dG~lyvtd~~~~~I~~v~~~-g~~~~~~~~~~~~~p~~~~~~~~~nGi~~~~dG~Lyva 217 (332)
..+.... .|.+.|+-+..+.++.+|.+ ||.+--...+. .....-+++..||.-||+
T Consensus 489 ~~g~lst-agglVF~Gt~dg~l~A~Da~TGe~LW~~~~~~---------~~~~~P~ty~~~G~qYv~ 545 (582)
T d1flga_ 489 WAGVLAT-AGNLVFTGTGDGYFKAFDAKSGKELWKFQTGS---------GIVSPPITWEQDGEQYLG 545 (582)
T ss_dssp CSCCEEE-TTTEEEEECTTSEEEEEETTTCCEEEEEECSS---------CCCSCCEEEEETTEEEEE
T ss_pred ccceeEE-cCCeEEEeCCCCeEEEEECCCCcEeEEEECCC---------CccccCEEEEECCEEEEE
Confidence 2233333 34454455678899999987 77553232221 122234788888966655
|
| >d1kv9a2 b.70.1.1 (A:1-560) Quinoprotein alcohol dehydrogenase, N-terminal domain {Pseudomonas putida, hk5 [TaxId: 303]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: Quinoprotein alcohol dehydrogenase-like family: Quinoprotein alcohol dehydrogenase-like domain: Quinoprotein alcohol dehydrogenase, N-terminal domain species: Pseudomonas putida, hk5 [TaxId: 303]
Probab=94.83 E-value=1.2 Score=40.93 Aligned_cols=103 Identities=13% Similarity=0.093 Sum_probs=63.8
Q ss_pred ceEEEeCCCCeEEEEEeCcCC------------------------------CccceEEEEECCCCcEEEEEecCCCCCCC
Q 020019 100 LGLVLDHPRNRLLVVAADVFG------------------------------NKYSAVAAYDLSTWNRLFLTQLSGPSDGK 149 (332)
Q Consensus 100 ~gi~vd~~~g~l~v~~~~~~~------------------------------~~~~~l~~~d~~~g~~~~~~~l~~~~~~~ 149 (332)
.+.++||+++.+|+...+... ...+.|..+|+.+|+.++..++..+.
T Consensus 384 ~~~a~dp~~~~~yvp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~G~l~A~D~~tGk~~W~~~~~~~~--- 460 (560)
T d1kv9a2 384 HSMSFNPGTGLVYIPYQEVPGVYRNEGKDFVTRKAFNTAAGFADATDVPAAVVSGALLAWDPVKQKAAWKVPYPTHW--- 460 (560)
T ss_dssp SCCEEETTTTEEEEEEEECCEEECCCGGGCCCCSSCCCSSCGGGCCCCCGGGCEEEEEEEETTTTEEEEEEEESSSC---
T ss_pred ccccccCCCCeeecccccccceeeccccccccccccccccCcccccCCCCcccccceEEEeCCCCeEeeeccCCCCC---
Confidence 478899998888887643210 01357889999999999887774321
Q ss_pred CCccceEECCCCcEEEEeCCCCeEEEEcCC-CceEEEecCCCCCCcccccCccccCeEEEccCceEEEE
Q 020019 150 SCADDVTVDAEGNAYVTDVTGSKIWKVGVK-GEFLSIISSPLFTPKEWYKNLVGLNGIVYHPDGFLIVI 217 (332)
Q Consensus 150 ~~~ndiavd~dG~lyvtd~~~~~I~~v~~~-g~~~~~~~~~~~~~p~~~~~~~~~nGi~~~~dG~Lyva 217 (332)
..+..... |.|.|.-+..+.++.+|.+ |+.+--.+.+. .....-+++.-||.-||+
T Consensus 461 --~gg~l~Ta-gglVF~G~~dg~l~A~Da~tGe~LW~~~l~~---------~~~~~P~ty~~dGkqyv~ 517 (560)
T d1kv9a2 461 --NGGTLSTA-GNLVFQGTAAGQMHAYSADKGEALWQFEAQS---------GIVAAPMTFELAGRQYVA 517 (560)
T ss_dssp --CCCEEEET-TTEEEEECTTSEEEEEETTTCCEEEEEECSS---------CCCSCCEEEEETTEEEEE
T ss_pred --CCceeEEC-CCEEEEECCCCcEEEEECCCCcEeEEEECCC---------CccccCEEEEECCEEEEE
Confidence 12333333 4455555678999999976 77553222221 122334777778855554
|
| >d1tl2a_ b.67.1.1 (A:) Tachylectin-2 {Japanese horseshoe crab (Tachypleus tridentatus) [TaxId: 6853]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 5-bladed beta-propeller superfamily: Tachylectin-2 family: Tachylectin-2 domain: Tachylectin-2 species: Japanese horseshoe crab (Tachypleus tridentatus) [TaxId: 6853]
Probab=94.61 E-value=0.048 Score=43.16 Aligned_cols=167 Identities=11% Similarity=0.051 Sum_probs=91.3
Q ss_pred EEEecCCc-cccceEEcCCCCEEEEEecCCeEEEEECCCCCCCccceeeeEEeccc---CcCC-CccceEEEeCCCCeEE
Q 020019 38 YHYHSSSF-FRECAKWDDSGRRFIVSFLDGGIGQVAVPDDYPPGTVLEEVTLVKDL---ELTG-NGSLGLVLDHPRNRLL 112 (332)
Q Consensus 38 i~~~~~~~-~pegia~d~~g~~~~~~~~~g~I~~vd~~~~~~~~~~~~~~~~~~~~---~~~~-~~~~gi~vd~~~g~l~ 112 (332)
+++-..++ .-.-|+++|+|++|.+. ++.+|+=.+.+-+- + .|.... +..+ +.-.=|-+||. |.||
T Consensus 32 ~~lGk~g~~n~~~i~fsP~G~LyaVr--~~~lY~Gp~~s~~n-----q--~wf~~atrIG~ggWn~FkflffdP~-G~Ly 101 (235)
T d1tl2a_ 32 TLIGKGGWSNFKFLFLSPGGELYGVL--NDKIYKGTPPTHDN-----D--NWMGRAKKIGNGGWNQFQFLFFDPN-GYLY 101 (235)
T ss_dssp EEEESSSCTTCSEEEECTTSCEEEEE--TTEEEEESCCCSTT-----C--CHHHHCEEEECSCGGGCSEEEECTT-SCEE
T ss_pred hhcCcccccceeEEEECCCCcEEEEE--CCeEEECCCCCcch-----H--HHHHhhhhcccCcccceEEEEECCC-ceEE
Confidence 44433333 22349999999988644 57888886554331 1 233211 1111 13456889995 9999
Q ss_pred EEEeCcCCCccceEEEEECCCCcE-EEE---EecCCCCC-CCCCccceEECCCCcEEEEeCCCCeEEEEcC-CCceEEEe
Q 020019 113 VVAADVFGNKYSAVAAYDLSTWNR-LFL---TQLSGPSD-GKSCADDVTVDAEGNAYVTDVTGSKIWKVGV-KGEFLSII 186 (332)
Q Consensus 113 v~~~~~~~~~~~~l~~~d~~~g~~-~~~---~~l~~~~~-~~~~~ndiavd~dG~lyvtd~~~~~I~~v~~-~g~~~~~~ 186 (332)
++.. +.|++=.+.+.+- .+. ..+ +. +-+...-+-+||+|.||..... .++|-.+ .+.-.+++
T Consensus 102 aVt~-------~~LYr~~pPtn~~q~W~g~a~~v---G~~gw~df~~lFFdP~G~LYaV~~~--~l~k~~pP~~~~d~WL 169 (235)
T d1tl2a_ 102 AVSK-------DKLYKASPPQSDTDNWIARATEV---GSGGWSGFKFLFFHPNGYLYAVHGQ--QFYKALPPVSNQDNWL 169 (235)
T ss_dssp EEET-------TEEEEESCCCSTTCCHHHHSEEE---ECSSGGGEEEEEECTTSCEEEEETT--EEEEECCCSSTTCCHH
T ss_pred EecC-------cceecCCcCcccchhhhhhhhhh---ccCCcCceeEEEECCCceEEEEECC--cEEEcCCCCCCCchhh
Confidence 9973 3566655444321 110 011 11 1123335778999999977443 5666543 34333333
Q ss_pred cCCCCCCcccccCccccCeEEEccCceEEEEeCCCCeEEEEeCCC
Q 020019 187 SSPLFTPKEWYKNLVGLNGIVYHPDGFLIVIHTFSGNLFKIDIVD 231 (332)
Q Consensus 187 ~~~~~~~p~~~~~~~~~nGi~~~~dG~Lyva~~~~~~i~~id~~~ 231 (332)
....... ...-..+..|.|+|||+||...- +.+|+=...+
T Consensus 170 ~~st~ig---r~~w~~~~fi~Fs~dG~L~~v~~--g~~Y~~~~P~ 209 (235)
T d1tl2a_ 170 ARATKIG---QGGWDTFKFLFFSSVGTLFGVQG--GKFYEDYPPS 209 (235)
T ss_dssp HHCEEEE---SSSGGGEEEEEECTTSCEEEEET--TEEEEESCCC
T ss_pred hhhhhhc---cCcccCceEEEECCCCcEEEEeC--CeEEecCCCC
Confidence 2211000 01123456999999999998743 7788765544
|
| >d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=94.40 E-value=0.97 Score=36.34 Aligned_cols=111 Identities=12% Similarity=0.006 Sum_probs=65.0
Q ss_pred ccceEEEeCCCCeEEEEEeCcCCCccceEEEEECCCCcEEEEEecCCCCCCCCCccceEECCCCc-EEEEeCCCCeEEEE
Q 020019 98 GSLGLVLDHPRNRLLVVAADVFGNKYSAVAAYDLSTWNRLFLTQLSGPSDGKSCADDVTVDAEGN-AYVTDVTGSKIWKV 176 (332)
Q Consensus 98 ~~~gi~vd~~~g~l~v~~~~~~~~~~~~l~~~d~~~g~~~~~~~l~~~~~~~~~~ndiavd~dG~-lyvtd~~~~~I~~v 176 (332)
.+..+...++ +.+++... ...+..++..+++......... ...++.++++ +.++....+.|..+
T Consensus 82 ~~~~~~~~~~-~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~v~~~~~~~v~~~ 146 (287)
T d1pgua2 82 QPKVASANND-GFTAVLTN------DDDLLILQSFTGDIIKSVRLNS--------PGSAVSLSQNYVAVGLEEGNTIQVF 146 (287)
T ss_dssp CEEEEEECSS-SEEEEEET------TSEEEEEETTTCCEEEEEECSS--------CEEEEEECSSEEEEEETTTSCEEEE
T ss_pred ceeeeeeccC-CceEEEee------cccceeeeccceeeeeeccccc--------eeeeeeccCcceeeeccccceeeee
Confidence 3556677775 66666654 2457788888887766555421 1245566665 55555555556666
Q ss_pred cCCCceEEEecCCCCCCcccccCccccCeEEEccCc-eEEEEeCCCCeEEEEeCCCC
Q 020019 177 GVKGEFLSIISSPLFTPKEWYKNLVGLNGIVYHPDG-FLIVIHTFSGNLFKIDIVDG 232 (332)
Q Consensus 177 ~~~g~~~~~~~~~~~~~p~~~~~~~~~nGi~~~~dG-~Lyva~~~~~~i~~id~~~~ 232 (332)
+............. .......++++|+| .|+++. ..++|..++..++
T Consensus 147 ~~~~~~~~~~~~~~--------~~~~v~~~~~s~~~~~l~~g~-~dg~i~i~d~~~~ 194 (287)
T d1pgua2 147 KLSDLEVSFDLKTP--------LRAKPSYISISPSETYIAAGD-VMGKILLYDLQSR 194 (287)
T ss_dssp ETTEEEEEEECSSC--------CSSCEEEEEECTTSSEEEEEE-TTSCEEEEETTTT
T ss_pred eccccceeeeeeec--------cCCceeEEEeccCcccccccc-ccccccceeeccc
Confidence 65432221111110 11235689999999 566554 5678888888765
|
| >d1tl2a_ b.67.1.1 (A:) Tachylectin-2 {Japanese horseshoe crab (Tachypleus tridentatus) [TaxId: 6853]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 5-bladed beta-propeller superfamily: Tachylectin-2 family: Tachylectin-2 domain: Tachylectin-2 species: Japanese horseshoe crab (Tachypleus tridentatus) [TaxId: 6853]
Probab=94.24 E-value=0.36 Score=38.02 Aligned_cols=147 Identities=17% Similarity=0.148 Sum_probs=84.7
Q ss_pred ccceEEEeCCCCeEEEEEeCcCCCccceEEEEECCCCc--EE--EEEecCCCCCCC-CCccceEECCCCcEEEEeCCCCe
Q 020019 98 GSLGLVLDHPRNRLLVVAADVFGNKYSAVAAYDLSTWN--RL--FLTQLSGPSDGK-SCADDVTVDAEGNAYVTDVTGSK 172 (332)
Q Consensus 98 ~~~gi~vd~~~g~l~v~~~~~~~~~~~~l~~~d~~~g~--~~--~~~~l~~~~~~~-~~~ndiavd~dG~lyvtd~~~~~ 172 (332)
...=|+++|+ |+||++-++ ++++=.+.+-+ .. ....+ +.+. ....-+-+||+|-||.... +.
T Consensus 41 n~~~i~fsP~-G~LyaVr~~-------~lY~Gp~~s~~nq~wf~~atrI---G~ggWn~FkflffdP~G~LyaVt~--~~ 107 (235)
T d1tl2a_ 41 NFKFLFLSPG-GELYGVLND-------KIYKGTPPTHDNDNWMGRAKKI---GNGGWNQFQFLFFDPNGYLYAVSK--DK 107 (235)
T ss_dssp TCSEEEECTT-SCEEEEETT-------EEEEESCCCSTTCCHHHHCEEE---ECSCGGGCSEEEECTTSCEEEEET--TE
T ss_pred ceeEEEECCC-CcEEEEECC-------eEEECCCCCcchHHHHHhhhhc---ccCcccceEEEEECCCceEEEecC--cc
Confidence 3456899995 999999753 56554433321 10 00112 1212 3455689999999997663 69
Q ss_pred EEEEcCC-CceEEE------ecCCCCCCcccccCccccCeEEEccCceEEEEeCCCCeEEEEeCCCCCCcc--ceeEEEE
Q 020019 173 IWKVGVK-GEFLSI------ISSPLFTPKEWYKNLVGLNGIVYHPDGFLIVIHTFSGNLFKIDIVDGVGEG--EEIKLIR 243 (332)
Q Consensus 173 I~~v~~~-g~~~~~------~~~~~~~~p~~~~~~~~~nGi~~~~dG~Lyva~~~~~~i~~id~~~~~~~~--~~~~~v~ 243 (332)
+||-.+- .+-.-+ +.+.. -..-.-|-|+|+|.||.... .+|+|-.+.++.-+. ..-+.+.
T Consensus 108 LYr~~pPtn~~q~W~g~a~~vG~~g---------w~df~~lFFdP~G~LYaV~~--~~l~k~~pP~~~~d~WL~~st~ig 176 (235)
T d1tl2a_ 108 LYKASPPQSDTDNWIARATEVGSGG---------WSGFKFLFFHPNGYLYAVHG--QQFYKALPPVSNQDNWLARATKIG 176 (235)
T ss_dssp EEEESCCCSTTCCHHHHSEEEECSS---------GGGEEEEEECTTSCEEEEET--TEEEEECCCSSTTCCHHHHCEEEE
T ss_pred eecCCcCcccchhhhhhhhhhccCC---------cCceeEEEECCCceEEEEEC--CcEEEcCCCCCCCchhhhhhhhhc
Confidence 9997643 211111 22211 12234678999999998844 368877665442110 0112233
Q ss_pred ecCCCCCCCCeEEEeCCCeEEEEeCCc
Q 020019 244 VAGGPLSFGDGLELLSPTKLVVAGNPS 270 (332)
Q Consensus 244 ~~g~~~~~pdGi~~~~dG~l~va~~~~ 270 (332)
- ..-..+..|.+.++|+||-+.+..
T Consensus 177 r--~~w~~~~fi~Fs~dG~L~~v~~g~ 201 (235)
T d1tl2a_ 177 Q--GGWDTFKFLFFSSVGTLFGVQGGK 201 (235)
T ss_dssp S--SSGGGEEEEEECTTSCEEEEETTE
T ss_pred c--CcccCceEEEECCCCcEEEEeCCe
Confidence 1 122456799999999999987653
|
| >d2bgra1 b.70.3.1 (A:39-508) Dipeptidyl peptidase IV/CD26, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: DPP6 N-terminal domain-like family: DPP6 N-terminal domain-like domain: Dipeptidyl peptidase IV/CD26, N-terminal domain species: Pig (Sus scrofa) [TaxId: 9823]
Probab=94.21 E-value=0.27 Score=43.65 Aligned_cols=97 Identities=8% Similarity=0.043 Sum_probs=57.4
Q ss_pred ceEEEEECCCCcEEEEEecCCCCCCCCCccceEECCCCc-E-EEEe-------CCCCeEEEEcCCCceEEEecCCCCCCc
Q 020019 124 SAVAAYDLSTWNRLFLTQLSGPSDGKSCADDVTVDAEGN-A-YVTD-------VTGSKIWKVGVKGEFLSIISSPLFTPK 194 (332)
Q Consensus 124 ~~l~~~d~~~g~~~~~~~l~~~~~~~~~~ndiavd~dG~-l-yvtd-------~~~~~I~~v~~~g~~~~~~~~~~~~~p 194 (332)
+.++.||.++++......-..-........++.+.|||+ | |.++ +..+.++.+|..++....+..
T Consensus 36 ~~~~~~~~~t~~~~~~~~~~~~~~~~~~i~~~~~SpDg~~i~~~~~~~~~~r~s~~~~~~l~d~~~~~~~~l~~------ 109 (470)
T d2bgra1 36 NNILVFNAEYGNSSVFLENSTFDEFGHSINDYSISPDGQFILLEYNYVKQWRHSYTASYDIYDLNKRQLITEER------ 109 (470)
T ss_dssp SCEEEEETTTCCEEEEECTTTTTTSSSCCCEEEECTTSSEEEEEEEEEECSSSCEEEEEEEEETTTTEECCSSC------
T ss_pred CcEEEEECCCCCEEEEEchhhhhhccCccceeEECCCCCEEEEEECCcceeeeccCceEEEEECCCCccccccc------
Confidence 357889999998765443210011123467899999997 3 3443 234677888877654322111
Q ss_pred ccccCccccCeEEEccCc-eEEEEeCCCCeEEEEeCCCC
Q 020019 195 EWYKNLVGLNGIVYHPDG-FLIVIHTFSGNLFKIDIVDG 232 (332)
Q Consensus 195 ~~~~~~~~~nGi~~~~dG-~Lyva~~~~~~i~~id~~~~ 232 (332)
.........|+||| .+.+. .++.++..+..++
T Consensus 110 ----~~~~~~~~~~SPDG~~ia~~--~~~~l~~~~~~~g 142 (470)
T d2bgra1 110 ----IPNNTQWVTWSPVGHKLAYV--WNNDIYVKIEPNL 142 (470)
T ss_dssp ----CCTTEEEEEECSSTTCEEEE--ETTEEEEESSTTS
T ss_pred ----CCccccccccccCcceeeEe--ecccceEEECCCC
Confidence 01234567899999 55553 2456887877765
|
| >d1k3ia3 b.69.1.1 (A:151-537) Galactose oxidase, central domain {Fungi (Fusarium sp.) [TaxId: 29916]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Galactose oxidase, central domain family: Galactose oxidase, central domain domain: Galactose oxidase, central domain species: Fungi (Fusarium sp.) [TaxId: 29916]
Probab=94.15 E-value=1.4 Score=37.30 Aligned_cols=123 Identities=9% Similarity=0.005 Sum_probs=70.0
Q ss_pred cceEEcCCCCEEEEE-ecCCeEEEEECCCCCCCccceeeeEEecccCcC-CCccceEEEeCCCCeEEEEEeCcC-CCccc
Q 020019 48 ECAKWDDSGRRFIVS-FLDGGIGQVAVPDDYPPGTVLEEVTLVKDLELT-GNGSLGLVLDHPRNRLLVVAADVF-GNKYS 124 (332)
Q Consensus 48 egia~d~~g~~~~~~-~~~g~I~~vd~~~~~~~~~~~~~~~~~~~~~~~-~~~~~gi~vd~~~g~l~v~~~~~~-~~~~~ 124 (332)
.+.++..+|++|++. .....+.++|+.+..+ ...+.+. .+.-.+.++-.+ |++|+...... .....
T Consensus 79 ~~~~~~~~g~i~v~Gg~~~~~~~~yd~~~~~w----------~~~~~~~~~r~~~~~~~~~d-G~v~v~GG~~~~~~~~~ 147 (387)
T d1k3ia3 79 PGISMDGNGQIVVTGGNDAKKTSLYDSSSDSW----------IPGPDMQVARGYQSSATMSD-GRVFTIGGSWSGGVFEK 147 (387)
T ss_dssp CEEEECTTSCEEEECSSSTTCEEEEEGGGTEE----------EECCCCSSCCSSCEEEECTT-SCEEEECCCCCSSSCCC
T ss_pred eEEEEecCCcEEEeecCCCcceeEecCccCcc----------cccccccccccccceeeecC-Cceeeeccccccccccc
Confidence 467888999988876 4456889999886543 2222222 123346677675 89888854321 12234
Q ss_pred eEEEEECCCCcEEEEEecCCCCCCCC------C--ccc-eEECCCCcEEEEeCCCCeEEEEcCCCc
Q 020019 125 AVAAYDLSTWNRLFLTQLSGPSDGKS------C--ADD-VTVDAEGNAYVTDVTGSKIWKVGVKGE 181 (332)
Q Consensus 125 ~l~~~d~~~g~~~~~~~l~~~~~~~~------~--~nd-iavd~dG~lyvtd~~~~~I~~v~~~g~ 181 (332)
.+.+||+++.+.........+..... . -.- +..-++|++|+.....+.++..++...
T Consensus 148 ~v~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~g~~~~~~~~~~~~~~ 213 (387)
T d1k3ia3 148 NGEVYSPSSKTWTSLPNAKVNPMLTADKQGLYRSDNHAWLFGWKKGSVFQAGPSTAMNWYYTSGSG 213 (387)
T ss_dssp CEEEEETTTTEEEEETTSCSGGGCCCCTTGGGTTTCSCCEEECGGGCEEECCSSSEEEEEECSTTC
T ss_pred eeeeecCCCCceeecCCCcccccccccccceeeccceeEEEEeCCCCEEEecCcCCcEEecCcccC
Confidence 68899998876543211111100000 0 011 233456778877766677777777643
|
| >d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: Cell cycle arrest protein BUB3 domain: Cell cycle arrest protein BUB3 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=94.12 E-value=0.64 Score=37.61 Aligned_cols=57 Identities=11% Similarity=0.151 Sum_probs=36.5
Q ss_pred ccCeEEEccCceEEEEeCCCCeEEEEeCCCCCCccceeEEEEecCCCCCCCCeEEEeCCCeEEEE
Q 020019 202 GLNGIVYHPDGFLIVIHTFSGNLFKIDIVDGVGEGEEIKLIRVAGGPLSFGDGLELLSPTKLVVA 266 (332)
Q Consensus 202 ~~nGi~~~~dG~Lyva~~~~~~i~~id~~~~~~~~~~~~~v~~~g~~~~~pdGi~~~~dG~l~va 266 (332)
..+.|+|+|++.++++-...+.|..+|++++ +.+..+.. .....-+++.++|+++++
T Consensus 253 ~v~~l~~sp~~~~lasg~~Dg~v~vWD~~~~----~~l~~~~~----~~~~~~~~~s~~~~~l~~ 309 (342)
T d1yfqa_ 253 PVNSIEFSPRHKFLYTAGSDGIISCWNLQTR----KKIKNFAK----FNEDSVVKIACSDNILCL 309 (342)
T ss_dssp CEEEEEECTTTCCEEEEETTSCEEEEETTTT----EEEEECCC----CSSSEEEEEEECSSEEEE
T ss_pred cceeEEecCCccEEEEECCCCEEEEEECCCC----cEEEEecC----CCCCEEEEEEeCCCEEEE
Confidence 4578999999955555566789999999876 23332221 112224677777775554
|
| >d1w6sa_ b.70.1.1 (A:) Methanol dehydrogenase, heavy chain {Methylobacterium extorquens [TaxId: 408]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: Quinoprotein alcohol dehydrogenase-like family: Quinoprotein alcohol dehydrogenase-like domain: Methanol dehydrogenase, heavy chain species: Methylobacterium extorquens [TaxId: 408]
Probab=94.00 E-value=2.3 Score=39.20 Aligned_cols=113 Identities=14% Similarity=0.048 Sum_probs=66.1
Q ss_pred CCEEEEEecCCeEEEEEC-CCCCCCccceeeeEEecccCcCC---------CccceEEEeCCC----CeEEEEEeCcCCC
Q 020019 56 GRRFIVSFLDGGIGQVAV-PDDYPPGTVLEEVTLVKDLELTG---------NGSLGLVLDHPR----NRLLVVAADVFGN 121 (332)
Q Consensus 56 g~~~~~~~~~g~I~~vd~-~~~~~~~~~~~~~~~~~~~~~~~---------~~~~gi~vd~~~----g~l~v~~~~~~~~ 121 (332)
|.+|+++...+.|+.++. ++++. .|.-++.... ..-.|+++-++. .++|+...
T Consensus 63 g~ly~~t~~~~~v~a~d~~~tG~~--------~W~~~~~~~~~~~~~~~~~~~~RGv~~~~~~~~~~~~v~~~t~----- 129 (596)
T d1w6sa_ 63 GKMYIHTSFPNNTFALGLDDPGTI--------LWQDKPKQNPAARAVACCDLVNRGLAYWPGDGKTPALILKTQL----- 129 (596)
T ss_dssp TEEEEECSTTTCEEEEETTCTTSE--------EEEECCCCCGGGGGGCSSCSCCCCCEEECCCSSSCCEEEEECT-----
T ss_pred CEEEEeeCCCCcEEEEeCCCCCCE--------EEEecCCCCcccccccccccccceeEEecCCCCCceEEEEEeC-----
Confidence 567766655678888886 45651 3432222110 012577775431 25777754
Q ss_pred ccceEEEEECCCCcEEEEEecCCCCCCCCCccceEECCCCcEEEEeCC-----CCeEEEEcCC-CceE
Q 020019 122 KYSAVAAYDLSTWNRLFLTQLSGPSDGKSCADDVTVDAEGNAYVTDVT-----GSKIWKVGVK-GEFL 183 (332)
Q Consensus 122 ~~~~l~~~d~~~g~~~~~~~l~~~~~~~~~~ndiavd~dG~lyvtd~~-----~~~I~~v~~~-g~~~ 183 (332)
.+.|+.+|.++|++.+......+...........+. ++.+|+..+. .|.|..+|.. |+.+
T Consensus 130 -dg~l~Alda~tG~~~w~~~~~d~~~~~~~t~~P~v~-~~~vivg~~~~e~~~~G~v~A~Da~TG~~~ 195 (596)
T d1w6sa_ 130 -DGNVAALNAETGETVWKVENSDIKVGSTLTIAPYVV-KDKVIIGSSGAELGVRGYLTAYDVKTGEQV 195 (596)
T ss_dssp -TSEEEEEETTTCCEEEEEECCCGGGTCBCCSCCEEE-TTEEEECCBCGGGTCCCEEEEEETTTCCEE
T ss_pred -CCCeEeeccccCceeccccccccccccccccCCcEE-CCeEEEeeccccccccCceEEEECCCCcEE
Confidence 367999999999998877653211111222223333 3568886543 5889999976 6754
|
| >d2ad6a1 b.70.1.1 (A:1-571) Methanol dehydrogenase, heavy chain {Methylophilus methylotrophus, w3a1 [TaxId: 17]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: Quinoprotein alcohol dehydrogenase-like family: Quinoprotein alcohol dehydrogenase-like domain: Methanol dehydrogenase, heavy chain species: Methylophilus methylotrophus, w3a1 [TaxId: 17]
Probab=93.53 E-value=2.7 Score=38.45 Aligned_cols=42 Identities=17% Similarity=-0.071 Sum_probs=30.7
Q ss_pred eEEEeCCCCeEEEEEeCcCC---------C-ccceEEEEECCCCcEEEEEec
Q 020019 101 GLVLDHPRNRLLVVAADVFG---------N-KYSAVAAYDLSTWNRLFLTQL 142 (332)
Q Consensus 101 gi~vd~~~g~l~v~~~~~~~---------~-~~~~l~~~d~~~g~~~~~~~l 142 (332)
.+.+|++++.+|+....... + -...++.+|.++|+..+..+.
T Consensus 239 ~~s~D~~~g~~y~~tg~~~p~~~~~r~g~n~~s~svvAld~~TG~~~W~~q~ 290 (571)
T d2ad6a1 239 WYAYDPKLNLFYYGSGNPAPWNETMRPGDNKWTMTIWGRDLDTGMAKWGYQK 290 (571)
T ss_dssp CCEEETTTTEEEEECCCCSCSCGGGSCSCCTTTTEEEEEETTTCCEEEEEES
T ss_pred ccccchhcCeeeeecccccCccccccccccccccceeeeeccchhheecccc
Confidence 57899998988887653211 1 135688999999999887764
|
| >d1k3ia3 b.69.1.1 (A:151-537) Galactose oxidase, central domain {Fungi (Fusarium sp.) [TaxId: 29916]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Galactose oxidase, central domain family: Galactose oxidase, central domain domain: Galactose oxidase, central domain species: Fungi (Fusarium sp.) [TaxId: 29916]
Probab=93.19 E-value=2.1 Score=36.15 Aligned_cols=124 Identities=14% Similarity=0.032 Sum_probs=75.1
Q ss_pred cceEEEeCCCCeEEEEEeCcCC------CccceEEEEECCCCcEEEEEecCCCCCCCCCccceEECCCCcEEEEeC-CCC
Q 020019 99 SLGLVLDHPRNRLLVVAADVFG------NKYSAVAAYDLSTWNRLFLTQLSGPSDGKSCADDVTVDAEGNAYVTDV-TGS 171 (332)
Q Consensus 99 ~~gi~vd~~~g~l~v~~~~~~~------~~~~~l~~~d~~~g~~~~~~~l~~~~~~~~~~ndiavd~dG~lyvtd~-~~~ 171 (332)
+...++.+.+|++|+....... .....+.+||+++++.........+. ..+..+.++.++|.+|+.-. ...
T Consensus 21 ~~~~a~~~~~gkv~v~GG~~~~~~~~~~~~~~~~~~yd~~t~~w~~~~~~~~~~--~~~~~~~~~~~~g~i~v~Gg~~~~ 98 (387)
T d1k3ia3 21 PAAAAIEPTSGRVLMWSSYRNDAFGGSPGGITLTSSWDPSTGIVSDRTVTVTKH--DMFCPGISMDGNGQIVVTGGNDAK 98 (387)
T ss_dssp CSEEEEETTTTEEEEEEECCCTTTCSCCCSEEEEEEECTTTCCBCCCEEEECSC--CCSSCEEEECTTSCEEEECSSSTT
T ss_pred ccEEEEEeeCCEEEEEEeecCcccCCCCCceeEEEEEECCCCcEeecCCCCCCc--ccceeEEEEecCCcEEEeecCCCc
Confidence 3445555556999998542111 12334678999988764433332121 35667889999999998753 346
Q ss_pred eEEEEcCCCceEEEecCCCCCCcccccCccccCeEEEccCceEEEEeCC------CCeEEEEeCCCC
Q 020019 172 KIWKVGVKGEFLSIISSPLFTPKEWYKNLVGLNGIVYHPDGFLIVIHTF------SGNLFKIDIVDG 232 (332)
Q Consensus 172 ~I~~v~~~g~~~~~~~~~~~~~p~~~~~~~~~nGi~~~~dG~Lyva~~~------~~~i~~id~~~~ 232 (332)
.+.++|+....-.. .+.+..+ ....+.++.+||.+|+.-.. .+.++++|+.+.
T Consensus 99 ~~~~yd~~~~~w~~--~~~~~~~------r~~~~~~~~~dG~v~v~GG~~~~~~~~~~v~~yd~~~~ 157 (387)
T d1k3ia3 99 KTSLYDSSSDSWIP--GPDMQVA------RGYQSSATMSDGRVFTIGGSWSGGVFEKNGEVYSPSSK 157 (387)
T ss_dssp CEEEEEGGGTEEEE--CCCCSSC------CSSCEEEECTTSCEEEECCCCCSSSCCCCEEEEETTTT
T ss_pred ceeEecCccCcccc--ccccccc------ccccceeeecCCceeeeccccccccccceeeeecCCCC
Confidence 78888887543222 2222222 22356778889977776432 246788888865
|
| >d1flga_ b.70.1.1 (A:) Ethanol dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: Quinoprotein alcohol dehydrogenase-like family: Quinoprotein alcohol dehydrogenase-like domain: Ethanol dehydrogenase species: Pseudomonas aeruginosa [TaxId: 287]
Probab=92.89 E-value=3.4 Score=37.78 Aligned_cols=43 Identities=19% Similarity=0.093 Sum_probs=31.0
Q ss_pred eEEEeCCCCeEEEEEeCcCC-----------------C-ccceEEEEECCCCcEEEEEecC
Q 020019 101 GLVLDHPRNRLLVVAADVFG-----------------N-KYSAVAAYDLSTWNRLFLTQLS 143 (332)
Q Consensus 101 gi~vd~~~g~l~v~~~~~~~-----------------~-~~~~l~~~d~~~g~~~~~~~l~ 143 (332)
.+.+|+++|.+|+......+ + -...+..+|.++|+..+.++..
T Consensus 250 ~~s~D~~~~~vy~~tgn~~p~~~~~~~~~g~~~~~~dn~ys~SvvAld~~tG~~~W~~q~~ 310 (582)
T d1flga_ 250 SASFDAETNTIIVGAGNPGPWNTWARTAKGGNPHDYDSLYTSGQVGVDPSSGEVKWFYQHT 310 (582)
T ss_dssp CCEEETTTTEEEEEECCBSSSCGGGGSCTTSCSTTCCCTTCSEEEEECTTTCCEEEEEESS
T ss_pred cceeccccceEEeccCCcccccccccccCCCCcCcccccccceeEEecccchhhhhccccc
Confidence 48999999999998643110 0 1246888999999999887753
|
| >d1k32a2 b.68.7.1 (A:39-319) Tricorn protease N-terminal domain {Archaeon Thermoplasma acidophilum [TaxId: 2303]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Tricorn protease N-terminal domain family: Tricorn protease N-terminal domain domain: Tricorn protease N-terminal domain species: Archaeon Thermoplasma acidophilum [TaxId: 2303]
Probab=92.83 E-value=0.31 Score=39.39 Aligned_cols=92 Identities=22% Similarity=0.295 Sum_probs=48.2
Q ss_pred EECCC--Cc-EEEEeCCCCeEEEEcCCCceEEEecCCCCCCcccccCccccCeEEEccCc-eEEEEeCCC-----CeEEE
Q 020019 156 TVDAE--GN-AYVTDVTGSKIWKVGVKGEFLSIISSPLFTPKEWYKNLVGLNGIVYHPDG-FLIVIHTFS-----GNLFK 226 (332)
Q Consensus 156 avd~d--G~-lyvtd~~~~~I~~v~~~g~~~~~~~~~~~~~p~~~~~~~~~nGi~~~~dG-~Lyva~~~~-----~~i~~ 226 (332)
.+.|| |+ +.++. .+.||.++.+|...+.+.... ....+.+|+||| +|+++...+ ..||.
T Consensus 5 ~~sPdi~G~~v~f~~--~~dl~~~d~~~g~~~~Lt~~~----------~~~~~p~~SPDG~~iaf~~~~~~~~~~~~i~~ 72 (281)
T d1k32a2 5 LLNPDIHGDRIIFVC--CDDLWEHDLKSGSTRKIVSNL----------GVINNARFFPDGRKIAIRVMRGSSLNTADLYF 72 (281)
T ss_dssp CEEEEEETTEEEEEE--TTEEEEEETTTCCEEEEECSS----------SEEEEEEECTTSSEEEEEEEESTTCCEEEEEE
T ss_pred ccCCCCCCCEEEEEe--CCcEEEEECCCCCEEEEecCC----------CcccCEEECCCCCEEEEEEeeCCCCCceEEEE
Confidence 34455 64 44432 356888877744333221111 123467899999 777654321 25899
Q ss_pred EeCCCCCCccceeEEEEecC----CCCCCCCeEEEeCCCeEE
Q 020019 227 IDIVDGVGEGEEIKLIRVAG----GPLSFGDGLELLSPTKLV 264 (332)
Q Consensus 227 id~~~~~~~~~~~~~v~~~g----~~~~~pdGi~~~~dG~l~ 264 (332)
++..++ ..+.+...+ ..........+.+||+.+
T Consensus 73 ~~~~~g-----~~~~lt~~~~~~~~~~~~~~~~~~spdg~~l 109 (281)
T d1k32a2 73 YNGENG-----EIKRITYFSGKSTGRRMFTDVAGFDPDGNLI 109 (281)
T ss_dssp EETTTT-----EEEECCCCCEEEETTEECSEEEEECTTCCEE
T ss_pred EEecCC-----ceEEeeecCCCccCccccccccccCCCCCEE
Confidence 998876 333332110 011234566677777643
|
| >d1kb0a2 b.70.1.1 (A:1-573) Quinoprotein alcohol dehydrogenase, N-terminal domain {Comamonas testosteroni [TaxId: 285]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: Quinoprotein alcohol dehydrogenase-like family: Quinoprotein alcohol dehydrogenase-like domain: Quinoprotein alcohol dehydrogenase, N-terminal domain species: Comamonas testosteroni [TaxId: 285]
Probab=92.61 E-value=3.5 Score=37.59 Aligned_cols=80 Identities=18% Similarity=0.118 Sum_probs=47.3
Q ss_pred ceEEEEECCCCcEEEEEecCCCCCCCCCccceEECCCCcEEEEeCCCCeEEEEcCC-CceEEEecCCCCCCcccccCccc
Q 020019 124 SAVAAYDLSTWNRLFLTQLSGPSDGKSCADDVTVDAEGNAYVTDVTGSKIWKVGVK-GEFLSIISSPLFTPKEWYKNLVG 202 (332)
Q Consensus 124 ~~l~~~d~~~g~~~~~~~l~~~~~~~~~~ndiavd~dG~lyvtd~~~~~I~~v~~~-g~~~~~~~~~~~~~p~~~~~~~~ 202 (332)
+.|..+|+++|+.++..+...|. ++-++...|.+.|+-+..+.++.+|.+ |+.+--...+.. ..
T Consensus 457 G~l~AiD~~tGk~~W~~~~~~p~------~gg~lstagglVF~G~~dg~l~A~Da~TGe~LW~~~~~~~---------~~ 521 (573)
T d1kb0a2 457 GRLLAWDPVAQKAAWSVEHVSPW------NGGTLTTAGNVVFQGTADGRLVAYHAATGEKLWEAPTGTG---------VV 521 (573)
T ss_dssp EEEEEEETTTTEEEEEEEESSSC------CCCEEEETTTEEEEECTTSEEEEEETTTCCEEEEEECSSC---------CC
T ss_pred ccEEEeCCCCCceEeeecCCCCC------CCceEEEcCCEEEEECCCCeEEEEECCCCcEeEEEECCCC---------cc
Confidence 46889999999999877763221 112222344455555567899999976 775532222211 11
Q ss_pred cCeEEEccCceEEEEe
Q 020019 203 LNGIVYHPDGFLIVIH 218 (332)
Q Consensus 203 ~nGi~~~~dG~Lyva~ 218 (332)
..-+.+.-||..||+-
T Consensus 522 ~~P~ty~~~GkQYv~v 537 (573)
T d1kb0a2 522 AAPSTYMVDGRQYVSV 537 (573)
T ss_dssp SCCEEEEETTEEEEEE
T ss_pred ccCEEEEECCEEEEEE
Confidence 2236777788666543
|
| >d1xfda1 b.70.3.1 (A:127-591) Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: DPP6 N-terminal domain-like family: DPP6 N-terminal domain-like domain: Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=92.10 E-value=3.7 Score=36.33 Aligned_cols=163 Identities=9% Similarity=0.041 Sum_probs=85.4
Q ss_pred EEEeCCCCeEEEEEeCcCCCccceEEEEECCCCcEEEEEecCCCCCCCCCccceEECCCCc-EEE---Ee-CCCCeEEEE
Q 020019 102 LVLDHPRNRLLVVAADVFGNKYSAVAAYDLSTWNRLFLTQLSGPSDGKSCADDVTVDAEGN-AYV---TD-VTGSKIWKV 176 (332)
Q Consensus 102 i~vd~~~g~l~v~~~~~~~~~~~~l~~~d~~~g~~~~~~~l~~~~~~~~~~ndiavd~dG~-lyv---td-~~~~~I~~v 176 (332)
+...++ +++++...+.. +....+..+|.++|+......-...+=-........+.+||. +++ ++ .+.+.++.+
T Consensus 260 ~~W~~d-~~~~~~~~nR~-q~~~~i~~~d~~tg~~~~~~~e~~~~wv~~~~~~p~~~~dg~~~~fi~~se~~g~~~ly~~ 337 (465)
T d1xfda1 260 VKWATS-TKVAVTWLNRA-QNVSILTLCDATTGVCTKKHEDESEAWLHRQNEEPVFSKDGRKFFFIRAIPQGGRGKFYHI 337 (465)
T ss_dssp EEESSS-SEEEEEEEETT-SCEEEEEEEETTTCCEEEEEEEECSSCCCCCCCCCEECTTSCSEEEEEEECCSSSSCEEEE
T ss_pred eEEcCC-CeEEEEEEccc-cccceEEEEcCCCCcEEEEEEEcCCceEeccCCceeEccCCCeeEEEEeeeecccCceEEE
Confidence 445554 77777654322 134468889999998665443211100011234578888985 433 22 334566666
Q ss_pred cC-------CCceEEEecCCCCCCcccccCccccCeEEEccCc-eEEEEeCC----CCeEEEEeCCCCCCccceeEEEEe
Q 020019 177 GV-------KGEFLSIISSPLFTPKEWYKNLVGLNGIVYHPDG-FLIVIHTF----SGNLFKIDIVDGVGEGEEIKLIRV 244 (332)
Q Consensus 177 ~~-------~g~~~~~~~~~~~~~p~~~~~~~~~nGi~~~~dG-~Lyva~~~----~~~i~~id~~~~~~~~~~~~~v~~ 244 (332)
.. .++..+.+....+. --.=++++.++ .+|++-.. ...||+++++++. ..+.+..
T Consensus 338 ~~~~~~~~~~~~~~~~LT~G~w~---------V~~i~~~d~~~~~vyF~a~~~~p~~~hly~v~l~g~~----~~~~lt~ 404 (465)
T d1xfda1 338 TVSSSQPNSSNDNIQSITSGDWD---------VTKILAYDEKGNKIYFLSTEDLPRRRQLYSANTVGNF----NRQCLSC 404 (465)
T ss_dssp EEECSSCCSSSCCCCBSCCSSSC---------EEEEEEEETTTTEEEEEESSSCTTCCEEEEECSSTTC----CCBCSST
T ss_pred EeccccccCCCceeEEeccCCce---------EEEEEEEcCCCCEEEEEEeCCCCCceEEEEEECCCCC----cceeecc
Confidence 42 22222222111111 01224689887 89887543 3469999998542 1111111
Q ss_pred cCCCCCCCCeEEEeCCCeEEEEeCC-----ceEEEEcCCC
Q 020019 245 AGGPLSFGDGLELLSPTKLVVAGNP-----SARLVESSDG 279 (332)
Q Consensus 245 ~g~~~~~pdGi~~~~dG~l~va~~~-----~~~~v~~~dg 279 (332)
.-....+-..+.++++|+.||.... ...++...++
T Consensus 405 ~~~~~~~~~~~~~S~~~~y~v~~~s~~~~P~~~~~~~~~~ 444 (465)
T d1xfda1 405 DLVENCTYFSASFSHSMDFFLLKCEGPGVPMVTVHNTTDK 444 (465)
T ss_dssp TSSSSCCCCEEEECTTSSEEEEECCSSSSCCEEEEETTTC
T ss_pred ccCCCCCEEEEEECCCCCEEEEEeecCCCCeEEEEECCCC
Confidence 0001123357889999998886421 2345667777
|
| >d1kv9a2 b.70.1.1 (A:1-560) Quinoprotein alcohol dehydrogenase, N-terminal domain {Pseudomonas putida, hk5 [TaxId: 303]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: Quinoprotein alcohol dehydrogenase-like family: Quinoprotein alcohol dehydrogenase-like domain: Quinoprotein alcohol dehydrogenase, N-terminal domain species: Pseudomonas putida, hk5 [TaxId: 303]
Probab=91.78 E-value=4.6 Score=36.70 Aligned_cols=42 Identities=19% Similarity=0.086 Sum_probs=30.6
Q ss_pred eEEEeCCCCeEEEEEeCcCC------------C-ccceEEEEECCCCcEEEEEec
Q 020019 101 GLVLDHPRNRLLVVAADVFG------------N-KYSAVAAYDLSTWNRLFLTQL 142 (332)
Q Consensus 101 gi~vd~~~g~l~v~~~~~~~------------~-~~~~l~~~d~~~g~~~~~~~l 142 (332)
.+.+|++++.+|+....... + -...+..+|.++|+..+..+.
T Consensus 234 ~~s~D~~~~l~y~~tgn~~~~~~~~~~~~~g~n~~s~sivAld~~tG~~~W~~Q~ 288 (560)
T d1kv9a2 234 SMAYDPELDLLYVGTGNGSPWNREVRSPGGGDNLYLSSILAIRPDTGKLAWHYQV 288 (560)
T ss_dssp CEEEETTTTEEEEECCCEESSCHHHHSTTCCCCTTTTEEEEECTTTCCEEEEEES
T ss_pred ccccccccCeeeecCCCCcccccccccccCCccccceeeEEecCCccceeEEEec
Confidence 58899998998887643110 0 135688999999999887765
|
| >d1w6sa_ b.70.1.1 (A:) Methanol dehydrogenase, heavy chain {Methylobacterium extorquens [TaxId: 408]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: Quinoprotein alcohol dehydrogenase-like family: Quinoprotein alcohol dehydrogenase-like domain: Methanol dehydrogenase, heavy chain species: Methylobacterium extorquens [TaxId: 408]
Probab=90.56 E-value=6.3 Score=36.09 Aligned_cols=43 Identities=16% Similarity=-0.064 Sum_probs=31.5
Q ss_pred ceEEEeCCCCeEEEEEeCcCC---------C-ccceEEEEECCCCcEEEEEec
Q 020019 100 LGLVLDHPRNRLLVVAADVFG---------N-KYSAVAAYDLSTWNRLFLTQL 142 (332)
Q Consensus 100 ~gi~vd~~~g~l~v~~~~~~~---------~-~~~~l~~~d~~~g~~~~~~~l 142 (332)
..+.+|++++.+|+....... + -...+..+|.++|+..+..+.
T Consensus 244 ~~~s~D~~~~lvy~~tg~~~p~~~~~r~g~n~ys~sivAlD~~TG~~~W~~Q~ 296 (596)
T d1w6sa_ 244 GWYAYDPGTNLIYFGTGNPAPWNETMRPGDNKWTMTIFGRDADTGEAKFGYQK 296 (596)
T ss_dssp SCCEEETTTTEEEEECCCCSCSCGGGSCSCCTTSSEEEEEETTTCCEEEEEES
T ss_pred cccccccCCCeeecccccccccccccccccccccccccccccccccccccccc
Confidence 367899999999998654211 0 135688999999999887765
|
| >d2ebsa1 b.69.13.1 (A:4-430) Oligoxyloglucan reducing end-specific cellobiohydrolase {Yeast (Geotrichum sp. M128) [TaxId: 203496]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Oligoxyloglucan reducing end-specific cellobiohydrolase family: Oligoxyloglucan reducing end-specific cellobiohydrolase domain: Oligoxyloglucan reducing end-specific cellobiohydrolase species: Yeast (Geotrichum sp. M128) [TaxId: 203496]
Probab=89.83 E-value=5.4 Score=34.26 Aligned_cols=166 Identities=13% Similarity=0.192 Sum_probs=86.6
Q ss_pred ccccceEEcCCC-CEEEEEecCCeEEEEECCCCCCCccceeeeEEeccc---C---cCCCccceEEEeCCC-CeEEEEEe
Q 020019 45 FFRECAKWDDSG-RRFIVSFLDGGIGQVAVPDDYPPGTVLEEVTLVKDL---E---LTGNGSLGLVLDHPR-NRLLVVAA 116 (332)
Q Consensus 45 ~~pegia~d~~g-~~~~~~~~~g~I~~vd~~~~~~~~~~~~~~~~~~~~---~---~~~~~~~gi~vd~~~-g~l~v~~~ 116 (332)
-+..+|+++|.. +.+|+....|.|+|=+- .++ +|..-. . ....+...|++||.+ +++|++..
T Consensus 12 g~~~~i~~~P~~~~~~ya~~~~gGv~~S~d-gG~---------tW~~~~~~~~~~~~~~~~~~~iavdp~np~~vy~~tg 81 (427)
T d2ebsa1 12 GYITGIVAHPKTKDLLYARTDIGGAYRWDA-GTS---------KWIPLNDFIEAQDMNIMGTESIALDPNNPDRLYLAQG 81 (427)
T ss_dssp SCEEEEEECSSSTTCEEEEESSSCEEEEET-TTT---------EEEESCTTCCGGGGGGCSEEEEEEETTEEEEEEEEEC
T ss_pred CcEEEEEECCCCCCEEEEEecCCCEEEEEC-CCC---------ceEECCCCCCCCCcccccEeEEEECCCCCCEEEEEec
Confidence 366789998873 45555555678888663 344 343211 1 011245689999864 57888765
Q ss_pred CcCCCccceEEEEECCCCcEEEEEecCCCCC----CCCCccceEECCCC--cEEEEeCCCCeEEEEcCCCceEEEecCCC
Q 020019 117 DVFGNKYSAVAAYDLSTWNRLFLTQLSGPSD----GKSCADDVTVDAEG--NAYVTDVTGSKIWKVGVKGEFLSIISSPL 190 (332)
Q Consensus 117 ~~~~~~~~~l~~~d~~~g~~~~~~~l~~~~~----~~~~~ndiavd~dG--~lyvtd~~~~~I~~v~~~g~~~~~~~~~~ 190 (332)
.........|++ ..+.|+-........+.. .......++++|.. .+|+... .+.|+|-.-.|+.-......
T Consensus 82 ~~~~~~~~gi~~-S~DgG~TW~~~~~~~~~~~~~~~~~~~~~i~v~P~~~~~v~~~~~-~~gl~~S~D~G~tW~~~~~~- 158 (427)
T d2ebsa1 82 RYVGDEWAAFYV-SEDRGQSFTIYESPFPMGANDMGRNNGERLAVNPFNSNEVWMGTR-TEGIWKSSDRAKTWTNVTSI- 158 (427)
T ss_dssp SCTTSSCCEEEE-ESSTTSEEEEEECSSCCCTTSTTTTSCCCEEECTTCTTCEEEECS-SSCEEEESSTTSSCEECTTS-
T ss_pred cccCCcCccEEE-eCCCCccceeecCCcccCccccCccceeEEEECCCccCccccccc-ccceeeecCCCceeeecccC-
Confidence 321111223432 334454333333211110 12334569999963 4787643 45677755556532211110
Q ss_pred CCCcccccCccccCeEEEccCc--eEEEEeCCCCeEEE
Q 020019 191 FTPKEWYKNLVGLNGIVYHPDG--FLIVIHTFSGNLFK 226 (332)
Q Consensus 191 ~~~p~~~~~~~~~nGi~~~~dG--~Lyva~~~~~~i~~ 226 (332)
+..........-|.++|.. .||++....+.|||
T Consensus 159 ---~~~~~~~~~~~~i~~~p~~~~~~y~~~~~~~giy~ 193 (427)
T d2ebsa1 159 ---PDAFTNGIGYTSVIFDPERNGTIYASATAPQGMYV 193 (427)
T ss_dssp ---SCCCCSSSCEEEEEECTTSTTCEEEEESSTTCEEE
T ss_pred ---cccccCCccceEEEecccccceeeeeeeeccccee
Confidence 0000011234567888764 88988777667875
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| >d2hqsa1 b.68.4.1 (A:163-431) TolB, C-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
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class: All beta proteins fold: 6-bladed beta-propeller superfamily: TolB, C-terminal domain family: TolB, C-terminal domain domain: TolB, C-terminal domain species: Escherichia coli [TaxId: 562]
Probab=89.30 E-value=4.1 Score=32.07 Aligned_cols=92 Identities=15% Similarity=0.109 Sum_probs=52.1
Q ss_pred ceEEEEECCCCcEEEEEecCCCCCCCCCccceEECCCCc-EEEEeCC--CCeEEEEcCCCceEEEecCCCCCCcccccCc
Q 020019 124 SAVAAYDLSTWNRLFLTQLSGPSDGKSCADDVTVDAEGN-AYVTDVT--GSKIWKVGVKGEFLSIISSPLFTPKEWYKNL 200 (332)
Q Consensus 124 ~~l~~~d~~~g~~~~~~~l~~~~~~~~~~ndiavd~dG~-lyvtd~~--~~~I~~v~~~g~~~~~~~~~~~~~p~~~~~~ 200 (332)
..+..++.+++....... .........+.++|. +++.... ...|+..+.++..........
T Consensus 151 ~~i~~~~~~~~~~~~~~~------~~~~~~~~~~spdg~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~---------- 214 (269)
T d2hqsa1 151 PQVYKVNINGGAPQRITW------EGSQNQDADVSSDGKFMVMVSSNGGQQHIAKQDLATGGVQVLSSTF---------- 214 (269)
T ss_dssp CEEEEEETTSSCCEECCC------SSSEEEEEEECTTSSEEEEEEECSSCEEEEEEETTTCCEEECCCSS----------
T ss_pred ceEeeeecccccceeeec------ccccccccccccccceeEEEeecCCceeeeEeecccccceEeecCc----------
Confidence 457778887665432211 123344567888886 4443332 335777777755444432211
Q ss_pred cccCeEEEccCc-eEEEEeCC--CCeEEEEeCCCC
Q 020019 201 VGLNGIVYHPDG-FLIVIHTF--SGNLFKIDIVDG 232 (332)
Q Consensus 201 ~~~nGi~~~~dG-~Lyva~~~--~~~i~~id~~~~ 232 (332)
.-...+|+||| .|++.... ...|+.++++++
T Consensus 215 -~~~~p~~SPDG~~i~f~s~~~~~~~l~~~~~dg~ 248 (269)
T d2hqsa1 215 -LDETPSLAPNGTMVIYSSSQGMGSVLNLVSTDGR 248 (269)
T ss_dssp -SCEEEEECTTSSEEEEEEEETTEEEEEEEETTSC
T ss_pred -cccceEECCCCCEEEEEEcCCCCcEEEEEECCCC
Confidence 12345899999 66554332 346889998865
|
| >d1kb0a2 b.70.1.1 (A:1-573) Quinoprotein alcohol dehydrogenase, N-terminal domain {Comamonas testosteroni [TaxId: 285]} | Back information, alignment and structure |
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class: All beta proteins fold: 8-bladed beta-propeller superfamily: Quinoprotein alcohol dehydrogenase-like family: Quinoprotein alcohol dehydrogenase-like domain: Quinoprotein alcohol dehydrogenase, N-terminal domain species: Comamonas testosteroni [TaxId: 285]
Probab=88.32 E-value=8.8 Score=34.73 Aligned_cols=42 Identities=17% Similarity=0.075 Sum_probs=30.1
Q ss_pred eEEEeCCCCeEEEEEeCcCC-------------CccceEEEEECCCCcEEEEEec
Q 020019 101 GLVLDHPRNRLLVVAADVFG-------------NKYSAVAAYDLSTWNRLFLTQL 142 (332)
Q Consensus 101 gi~vd~~~g~l~v~~~~~~~-------------~~~~~l~~~d~~~g~~~~~~~l 142 (332)
.+.+|++++.+|+....... .....|..+|.++|+..+..+.
T Consensus 247 ~~s~D~~~g~~~~~~g~~~~~~~~~~~~~~g~~~~~~svvAld~~tG~~~W~~q~ 301 (573)
T d1kb0a2 247 SMTFDAELNTMYVGTGNGSPWSHKVRSPKGGDNLYLASIVALDPDTGKYKWHYQE 301 (573)
T ss_dssp CEEEETTTTEEEEECCCEESSCHHHHSTTCCCCTTTTEEEEECTTTCCEEEEEES
T ss_pred cceEchhhCeeeeccCCCccccccccccccccccccceEEEecccchheeecccc
Confidence 47899998998887643110 1234688999999999887764
|
| >d1utca2 b.69.6.1 (A:4-330) Clathrin heavy-chain terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
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class: All beta proteins fold: 7-bladed beta-propeller superfamily: Clathrin heavy-chain terminal domain family: Clathrin heavy-chain terminal domain domain: Clathrin heavy-chain terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=87.71 E-value=3.1 Score=34.93 Aligned_cols=71 Identities=23% Similarity=0.405 Sum_probs=51.0
Q ss_pred cCcCCCccceEEEeCCCCeEEEEEeCcCCCccceEEEEECCCCcEEEEEecCCCCCCCCCccceEECCCCcEEEE--eCC
Q 020019 92 LELTGNGSLGLVLDHPRNRLLVVAADVFGNKYSAVAAYDLSTWNRLFLTQLSGPSDGKSCADDVTVDAEGNAYVT--DVT 169 (332)
Q Consensus 92 ~~~~~~~~~gi~vd~~~g~l~v~~~~~~~~~~~~l~~~d~~~g~~~~~~~l~~~~~~~~~~ndiavd~dG~lyvt--d~~ 169 (332)
|+..+.-|..|.+.+..|.+|+... .+.++.||+++|.....-++. ++ .+|++ +..
T Consensus 251 pea~~DFPvamqvs~kygiiyviTK------~G~i~lyDleTgt~i~~nRIs---------------~~-~iF~~a~~~~ 308 (327)
T d1utca2 251 PEAQNDFPVAMQISEKHDVVFLITK------YGYIHLYDLETGTCIYMNRIS---------------GE-TIFVTAPHEA 308 (327)
T ss_dssp TTCTTCCEEEEEEETTTTEEEEEET------TSEEEEEETTTCCEEEEEECC---------------SS-CEEEEEEETT
T ss_pred ccccCCcEEEEEeeccCCEEEEEec------CcEEEEEEcccccEEEEeecC---------------CC-ceEEeccCCC
Confidence 5545567999999998899999985 578999999999988766663 11 24443 334
Q ss_pred CCeEEEEcCCCceEE
Q 020019 170 GSKIWKVGVKGEFLS 184 (332)
Q Consensus 170 ~~~I~~v~~~g~~~~ 184 (332)
.+.|+.++.+|+...
T Consensus 309 ~~Gi~~VNr~GqVl~ 323 (327)
T d1utca2 309 TAGIIGVNRKGQVLS 323 (327)
T ss_dssp TTEEEEEETTSEEEE
T ss_pred CceEEEECCCCeEEE
Confidence 567777777776543
|