Citrus Sinensis ID: 020034

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330--
Protein Sequence
MGVDMGSMRAALPSVGMVIVLLAQVSNMEVIKAAMSKGINKYVIIVYSDALSSLFFLFCSFLFHRSERPQLTFSILCSFFLLSVFGCSSQIFSFVGIQYSSPTLSTAMLNLIPAFTFVLAIIFRLEKLNWENKSSQAKSLGTFASIGGAFVVTFYKGPPLIGELSHSGSPRRLLLSPQLSWILGGFFLAAEAFMNSAWFILQALILRKFAAVLIIMFYLFFFNTILSTAFALIVVSEPSDWKLGLDIGLVAVLYSVSSYWHWVSSWLVHMVPVENWTSLCINVQALGHCLLYCHGCRHCRRRFLSWKFNWSNDNCSRILCSDVGKVQRRKDH
Secondary Structure (PSIPRED)
ccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHcccccccEEEEEEEEccHHHHHHHHcccHHHHHHHHHHHHHHcccccccccccEEEcEEEEEccEEEEEEEcccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHEEEEEEcccccEEEcccccEEEEEEEccHHHHHHHHEEccEEEEEEcccHHHHHHHHHHHHHHccccccccEEEcccccccccccccEEEEEEEccEEccccc
Secondary Structure Prediction (SSPRO)
ccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccHHHEHHHHHHHHHHHHHHHHccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHccccHEEEcccHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHEEEEccccccccEEEEcccccEEEcccc
Coil and Loop (DISEMBL)
mgvdmgsmraalpSVGMVIVLLAQVSNMEVIKAAMSKGINKYVIIVYSDALSSLFFLFCSFlfhrserpqltfSILCSFFLLsvfgcssqIFSFVgiqyssptlSTAMLNLIPAFTFVLAIIFRLEKLNWENKSSQAKSLGTFASIGGAFvvtfykgppligelshsgsprrlllspqlswilGGFFLAAEAFMNSAWFILQALILRKFAAVLIIMFYLFFFNTILSTAFALIVvsepsdwklglDIGLVAVLYSVSSYWHWVSSWLVHMVPVENWTSLCINVQALGHCLlychgcrhcrrrflswkfnwsndncsrilcsdvgkvqrrkdh
Flexible Loop (DISEMBL)
MGVDMGSMRAALPSVGMVIVLLAQVSNMEVIKAAMSKGINKYVIIVYSDALSSLFFLFCSFLFHRSERPQLTFSILCSFFLLSVFGCSSQIFSFVGIQYSSPTLSTAMLNLIPAFTFVLAIIFRLEKLNWENKSSQAKSLGTFASIGGAFVVTFYKGPPLIGELSHSGSPRRLLLSPQLSWILGGFFLAAEAFMNSAWFILQALILRKFAAVLIIMFYLFFFNTILSTAFALIVVSEPSDWKLGLDIGLVAVLYSVSSYWHWVSSWLVHMVPVENWTSLCINVQALGHCLLYCHGCRHCRRRFLSWKfnwsndncsrilcsdvgkvqrrkdh
Low Complexity Region (SEG)
MGVDMGSMRAALPSVGMVIVLLAQVSNMEVIKAAMSKGINKYVIIVYSDAlsslfflfcsflfHRSERPQLTFSILCSFFLLSVFGCSSQIFSFVGIQYSSPTLSTAMLNLIPAFTFVLAIIFRLEKLNWENKSSQAKSLGTFASIGGAFVVTFYKGPPLIGElshsgsprrlllspqlsWILGGFFLAAEAFMNSAWFILQALILRKFAAVLIIMFYLFFFNTILSTAFALIVVSEPSDWKLGLDIGLVAvlysvssywhwvsswlvhMVPVENWTSLCINVQALGHCLLYCHGCRHCRRRFLSWKFNWSNDNCSRILCSDVGKVQRRKDH
Disordered region (IsUnstruct)
***********LPSVGMVIVLLAQVSNMEVIKAAMSKGINKYVIIVYSDALSSLFFLFCSFLFHRSERPQLTFSILCSFFLLSVFGCSSQIFSFVGIQYSSPTLSTAMLNLIPAFTFVLAIIFRLEKLNWENKSSQAKSLGTFASIGGAFVVTFYKGPPLIGELSHSGSPRRLLLSPQLSWILGGFFLAAEAFMNSAWFILQALILRKFAAVLIIMFYLFFFNTILSTAFALIVVSEPSDWKLGLDIGLVAVLYSVSSYWHWVSSWLVHMVPVENWTSLCINVQALGHCLLYCHGCRHCRRRFLSWKFNWSNDNCSRILCSDVG********
Disordered Region (DISOPRED)
************PSVGMVIVLLAQVSNMEVIKAAMSKGINKYVIIVYSDALSSLFFLFCSFLFHRSERPQLTFSILCSFFLLSVFGCSSQIFSFVGIQYSSPTLSTAMLNLIPAFTFVLAIIFRLEKLNWENKSSQAKSLGTFASIGGAFVVTFYKGPPLI*******************WILGGFFLAAEAFMNSAWFILQALILRKFAAVLIIMFYLFFFNTILSTAFALIVVSEPSDWKLGLDIGLVAVLYSVSSYWHWVSSWLVHMVPVENWTSLCINVQALGHCLLYCHGCRHCRRRFLSWKFNWSNDNCSRILCSDVG*VQ*****
Disordered Region (DISEMBL)
MGVDMGSMRAALPSVGMVIVLLAQVSNMEVIKAAMSKGINKYVIIVYSDALSSLFFLFCSFLFHRSERPQLTFSILCSFFLLSVFGCSSQIFSFVGIQYSSPTLSTAMLNLIPAFTFVLAIIFRLEKLNWENKSSQAKSLGTFASIGGAFVVTFYKGPPLIGELSHSGSPRRLLLSPQLSWILGGFFLAAEAFMNSAWFILQALILRKFAAVLIIMFYLFFFNTILSTAFALIVVSEPSDWKLGLDIGLVAVLYSVSSYWHWVSSWLVHMVPVENWTSLCINVQALGHCLLYCHGCRHCRRRFLSWKFNWSNDNCSRILCSDVG********
Disordered Region (DISPRO)
*****GSMRAALPSVGMVIVLLAQVSNMEVIKAAMSKGINKYVIIVYSDALSSLFFLFCSFLFHRSERPQLTFSILCSFFLLSVFGCSSQIFSFVGIQYSSPTLSTAMLNLIPAFTFVLAIIFRLEKLNWENKSSQAKSLGTFASIGGAFVVTFYKGPPLIGEL**************LSWILGGFFLAAEAFMNSAWFILQALILRKFAAVLIIMFYLFFFNTILSTAFALIVVSEPSDWKLGLDIGLVAVLYSVSSYWHWVSSWLVHMVPVENWTSLCINVQALGHCLLYCHGCRHCRRRFLSWKFNWSNDNCSRILCSDVGK*Q*****
Transmembrane Helix (TMHMM)
iiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (HMMTOP)
iiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHoooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHoooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHooooooooooooHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHooooooooooHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHoooooooooooooHHHHHHHHHHHHHHHHHHHiiiHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSoooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHoooooooooooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MGVDMGSMRAALPSVGMVIVLLAQVSNMEVIKAAMSKGINKYVIIVYSDALSSLFFLFCSFLFHRSERPQLTFSILCSFFLLSVFGCSSQIFSFVGIQYSSPTLSTAMLNLIPAFTFVLAIIFRLEKLNWENKSSQAKSLGTFASIGGAFVVTFYKGPPLIGELSHSGSPRRLLLSPQLSWILGGFFLAAEAFMNSAWFILQALILRKFAAVLIIMFYLFFFNTILSTAFALIVVSEPSDWKLGLDIGLVAVLYSVSSYWHWVSSWLVHMVPVENWTSLCINVQALGHCLLYCHGCRHCRRRFLSWKFNWSNDNCSRILCSDVGKVQRRKDH
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	332	2.2.26 [Sep-21-2011]
Q9FL08	368	WAT1-related protein At5g	yes	no	0.789	0.711	0.372	2e-38
Q94JU2	367	WAT1-related protein At3g	no	no	0.719	0.651	0.423	3e-38
F4KHA8	370	WAT1-related protein At5g	no	no	0.789	0.708	0.343	6e-35
Q945L4	339	WAT1-related protein At5g	no	no	0.731	0.716	0.362	3e-34
Q9FL41	402	WAT1-related protein At5g	no	no	0.680	0.562	0.324	1e-29
Q9ZUS1	380	WAT1-related protein At2g	no	no	0.734	0.642	0.338	2e-29
F4JK59	347	WAT1-related protein At4g	no	no	0.719	0.688	0.354	3e-28
Q56X95	355	WAT1-related protein At3g	no	no	0.713	0.667	0.355	6e-28
Q9LRS5	353	WAT1-related protein At3g	no	no	0.704	0.662	0.364	7e-28
Q9M130	365	WAT1-related protein At4g	no	no	0.728	0.663	0.327	8e-28

>sp|Q9FL08|WTR42_ARATH WAT1-related protein At5g40240 OS=Arabidopsis thaliana GN=At5g40240 PE=2 SV=1

 Score =  160 bits (404), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 101/271 (37%), Positives = 149/271 (54%), Gaps = 9/271 (3%)

Query: 9   RAALPSVGMVIVLLAQVSNMEVIKAAMSKGINKYVIIVYSDALSSLFFLFCSFLFHRSER 68
           R  +P   M  V  A V +  + KAA  +G++ YV + YS  +S+L  L  S +F RS R
Sbjct: 16  RDVVPFAAMFAVECATVGSNTLFKAATLRGLSFYVFVFYSYIVSTLLLLPLSVIFGRSRR 75

Query: 69  -PQLTFSILCSFFLLSVFGCSSQIFSFVGIQYSSPTLSTAMLNLIPAFTFVLAIIFRLEK 127
            P     +    FLL + G  SQI    GI YSSPTL++A+ NL PAFTF LA+IFR+E+
Sbjct: 76  LPAAKSPLFFKIFLLGLVGFMSQIAGCKGIAYSSPTLASAISNLTPAFTFTLAVIFRMEQ 135

Query: 128 LNWENKSSQAKSLGTFASIGGAFVVTFYKGPPLIGELSHSGSPRRLLLSPQL-----SWI 182
           +   + ++QAK +G   SI GA VV  YKGP ++   S +     + L  QL     SWI
Sbjct: 136 VRLRSSATQAKIIGAILSISGALVVVLYKGPQVLASASFTTVLPTVTLHQQLTSIESSWI 195

Query: 183 LGGFFLAAEAFMNSAWFILQALILRKFAAVLIIMFYLFFFNTILSTAFALIVVSEPSDWK 242
           +GG  LA++ F+ S W+ILQ  ++  +   + ++F+   F T++S    L   S  + W 
Sbjct: 196 IGGLLLASQYFLISVWYILQTRVMEVYPEEITVVFFYNLFATLISVPVCLFAESNLTSWV 255

Query: 243 LGLDIGLVAVLYS---VSSYWHWVSSWLVHM 270
           L  DI L A++YS   VS +     +W +H+
Sbjct: 256 LKPDISLAAIIYSGVFVSLFSALTHTWGLHL 286

Arabidopsis thaliana (taxid: 3702)

>sp|Q94JU2|WTR18_ARATH WAT1-related protein At3g28050 OS=Arabidopsis thaliana GN=At3g28050 PE=2 SV=1

 Score =  159 bits (402), Expect = 3e-38,   Method: Compositional matrix adjust.
 Identities = 108/255 (42%), Positives = 153/255 (60%), Gaps = 16/255 (6%)

Query: 9   RAALPSVGMVIVLLAQVSNMEVIKAAMSKGINKYVIIVYSDALSSLFF---LFCSFLFHR 65
           R  LP   +VI+  A V    + KAA  KG++ +V IVYS  L++L     LFCSF   R
Sbjct: 8   REVLPVTALVIMECANVGLNTLFKAATLKGMSFHVFIVYSYGLAALLLLPSLFCSF---R 64

Query: 66  SER-PQLTFSILCSFFLLSVFGCSSQIFSFVGIQYSSPTLSTAMLNLIPAFTFVLAIIFR 124
           S   P + FSIL    LL + GC S I  + GI YSSPTL++A+ NL PAFTF+LA++FR
Sbjct: 65  SRTLPPMNFSILYKIVLLGIIGCCSNIMGYTGINYSSPTLASAISNLTPAFTFLLAVVFR 124

Query: 125 LEKLNWENKSSQAKSLGTFASIGGAFVVTFYKGPPLIGELSHSGSPRRLLLSPQLSWILG 184
           +E ++++  SS AK LGT  SIGGAF+VT Y GP +I +   S S R    +P   WILG
Sbjct: 125 MESVSFKRTSSVAKMLGTVVSIGGAFIVTLYNGPVVIAKSPPSVSLRSQSTNPN--WILG 182

Query: 185 GFFLAAEAFMNSAWFILQALILRKFAAVLIIMFYLFFFNTILSTAFALIVV-SEPSD--- 240
             FLA E F    W+I+Q  I+R++ A   +   + F++  +S   AL+ + +E +D   
Sbjct: 183 AGFLAVEYFCVPLWYIVQTQIMREYPAEFTV---VCFYSIGVSFWTALVTLFTEGNDLGA 239

Query: 241 WKLGLDIGLVAVLYS 255
           WK+  +I LV+++ S
Sbjct: 240 WKIKPNIALVSIVCS 254

Arabidopsis thaliana (taxid: 3702)

>sp|F4KHA8|WTR41_ARATH WAT1-related protein At5g40230 OS=Arabidopsis thaliana GN=At5g40230 PE=2 SV=1

 Score =  148 bits (373), Expect = 6e-35,   Method: Compositional matrix adjust.
 Identities = 93/271 (34%), Positives = 150/271 (55%), Gaps = 9/271 (3%)

Query: 9   RAALPSVGMVIVLLAQVSNMEVIKAAMSKGINKYVIIVYSDALSSLFFLFCSFLFHRSER 68
           R  +P   MV V    V +  + KAA  +G++ YV + Y+  +++L  L  S +F RS+R
Sbjct: 17  RDVVPFTAMVAVECVTVGSNTLFKAATLRGLSFYVFVFYTYVVATLVLLPLSLIFGRSKR 76

Query: 69  -PQLTFSILCSFFLLSVFGCSSQIFSFVGIQYSSPTLSTAMLNLIPAFTFVLAIIFRLEK 127
            P     +  + FLL++ G  S I    GI+YSSPTL++A+ NL PAFTF LA+IFR+E+
Sbjct: 77  LPSAKTPVFFNIFLLALVGFMSLIVGCKGIEYSSPTLASAISNLTPAFTFTLAVIFRMEQ 136

Query: 128 LNWENKSSQAKSLGTFASIGGAFVVTFYKGPPLIGELSHSGSPRRLLLSPQL-----SWI 182
           +   + ++QAK +GT  SI GA VV  YKGP ++ + S +     + L   L     SWI
Sbjct: 137 IVLRSSATQAKIIGTIVSISGALVVILYKGPKVLTDASLTPPSPTISLYQHLTSFDSSWI 196

Query: 183 LGGFFLAAEAFMNSAWFILQALILRKFAAVLIIMFYLFFFNTILSTAFALIVVSEPSDWK 242
           +GG  LA +  + S W+ILQ  ++  +   + ++F      T++S    L    + + + 
Sbjct: 197 IGGLLLATQYLLVSVWYILQTRVMELYPEEITVVFLYNLCATLISAPVCLFAEKDLNSFI 256

Query: 243 LGLDIGLVAVLYS---VSSYWHWVSSWLVHM 270
           L   + L +V+YS   VSS+   + +W +H+
Sbjct: 257 LKPGVSLASVMYSGGLVSSFGSVIHTWGLHL 287

Arabidopsis thaliana (taxid: 3702)

>sp|Q945L4|WTR40_ARATH WAT1-related protein At5g40210 OS=Arabidopsis thaliana GN=At5g40210 PE=2 SV=1

 Score =  146 bits (368), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 95/262 (36%), Positives = 147/262 (56%), Gaps = 19/262 (7%)

Query: 17  MVIVLLAQVSNMEVIKAAMSKGINKYVIIVYSDALSSLFFLFCSFLFHRSER-PQLTFSI 75
           MV+   + V    ++KAA SKG++ +V++VYS    SL  L  +F   RS   P LTFSI
Sbjct: 17  MVVTEFSNVGVNTLVKAATSKGLSPFVVLVYSYTFGSLLLLPLTFFSFRSRSLPPLTFSI 76

Query: 76  LCSFFLLSVFGCSSQIFSFVGIQYSSPTLSTAMLNLIPAFTFVLAIIFRLEKLNWENKSS 135
           LC+  +L +   + QI  + GI+YSSPTLS+AM N+ PAFTF+LA++FR+E ++   KSS
Sbjct: 77  LCNMGILGLIASAFQILGYNGIKYSSPTLSSAMSNVNPAFTFILAVVFRMENISLGKKSS 136

Query: 136 QAKSLGTFASIGGAFVVTFYKGPPLIGELSHSGSPRRLLLSPQLSWILGGFFLAAEAFMN 195
            AK LGT  SI GA VVT Y GP              +L+S    WI+GG  LA +  + 
Sbjct: 137 VAKVLGTILSIIGALVVTLYHGP--------------MLMSSHSDWIIGGGLLALQYILV 182

Query: 196 SAWFILQALILRKF-AAVLIIMFYLFFFNTILSTAFALIVVSEPSDWKLGLDIGLVAVLY 254
           S  +++ A  + ++ +AV++ + +      + +    L     P  W +  DI L+ V+ 
Sbjct: 183 SVSYLVMAHTMGRYPSAVVVTLVHNVCIAVVCAFVSLLAEKDNPKAWVIRFDITLITVVA 242

Query: 255 S--VSSYWHWVSSWLV-HMVPV 273
           +  ++S ++ + +W V H  PV
Sbjct: 243 TGILNSGYYVIHTWAVSHKGPV 264

Arabidopsis thaliana (taxid: 3702)

>sp|Q9FL41|WTR38_ARATH WAT1-related protein At5g07050 OS=Arabidopsis thaliana GN=At5g07050 PE=2 SV=1

 Score =  130 bits (327), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 77/237 (32%), Positives = 132/237 (55%), Gaps = 11/237 (4%)

Query: 30  VIKAAMSKGINKYVIIVYSDALSSLFFLFCSFLFHRSERPQLTFSILCSFFLLSVFG-CS 88
           + K +++ G++ YV++VY  A+++      +F F R  +P++TFSI    F+L + G   
Sbjct: 35  ITKISLNTGMSHYVLVVYRHAIATAVIAPFAFFFERKAQPKITFSIFMQLFILGLLGPVI 94

Query: 89  SQIFSFVGIQYSSPTLSTAMLNLIPAFTFVLAIIFRLEKLNWENKSSQAKSLGTFASIGG 148
            Q F ++G++Y+SPT S AM N++PA TF+LA++FR+E L+ +    QAK  GT  ++ G
Sbjct: 95  DQNFYYMGLKYTSPTFSCAMSNMLPAMTFILAVLFRMEMLDLKKLWCQAKIAGTVVTVAG 154

Query: 149 AFVVTFYKGPPL---------IGELSHSGSPRRLLLSPQLSWILGGFFLAAEAFMNSAWF 199
           A ++T YKGP +         I + SH+ +      S    ++ G   L       ++ F
Sbjct: 155 AMLMTIYKGPIVELFWTKYMHIQDSSHANTTSSKNSSSDKEFLKGSILLIFATLAWASLF 214

Query: 200 ILQALILRKFAAVLIIMFYLF-FFNTILSTAFALIVVSEPSDWKLGLDIGLVAVLYS 255
           +LQA IL+ +A   + +  L  F  T+ + A   ++   PS W++G D+ L+A  YS
Sbjct: 215 VLQAKILKTYAKHQLSLTTLICFIGTLQAVAVTFVMEHNPSAWRIGWDMNLLAAAYS 271

Arabidopsis thaliana (taxid: 3702)

>sp|Q9ZUS1|WTR13_ARATH WAT1-related protein At2g37460 OS=Arabidopsis thaliana GN=At2g37460 PE=2 SV=1

 Score =  129 bits (325), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 86/254 (33%), Positives = 138/254 (54%), Gaps = 10/254 (3%)

Query: 8   MRAALPSVGMVIVLLAQVSNMEVI-KAAMSKGINKYVIIVYSDALSSLFFLFCSFLFHRS 66
           M  A P + MV VL   ++ M+++ KA ++KG++ YV++VY  A++++     +F F + 
Sbjct: 10  MEKARPFISMV-VLQVGLAGMDILSKAVLNKGMSNYVLVVYRHAVATIVMAPFAFYFDKK 68

Query: 67  ERPQLTFSILCSFFLLSVFG----CSSQIFSFVGIQYSSPTLSTAMLNLIPAFTFVLAII 122
            RP++T  I   FF +S+ G       Q   ++G++Y++ T +TAM N++PA TFVLA I
Sbjct: 69  VRPKMTLMI---FFKISLLGLLEPVIDQNLYYLGMKYTTATFATAMYNVLPAITFVLAYI 125

Query: 123 FRLEKLNWENKSSQAKSLGTFASIGGAFVVTFYKGPPLIGELSHSGSPRRLLLSPQLSWI 182
           F LE++      S  K +GT A++GGA ++T  KGP L    +   S      +   S I
Sbjct: 126 FGLERVKLRCIRSTGKVVGTLATVGGAMIMTLVKGPVLDLFWTKGVSAHNTAGTDIHSAI 185

Query: 183 LGGFFLAAEAFMNSAWFILQALILRKFAAVLIIMFYLFFFNTILSTAFALIVVS-EPSDW 241
            G   +    F  + + ILQA+ LR + A L +  ++    TI  TA AL++    PS W
Sbjct: 186 KGAVLVTIGCFSYACFMILQAITLRTYPAELSLTAWICLMGTIEGTAVALVMEKGNPSAW 245

Query: 242 KLGLDIGLVAVLYS 255
            +G D  L+   YS
Sbjct: 246 AIGWDTKLLTATYS 259

Arabidopsis thaliana (taxid: 3702)

>sp|F4JK59|WTR33_ARATH WAT1-related protein At4g15540 OS=Arabidopsis thaliana GN=At4g15540 PE=2 SV=1

 Score =  126 bits (316), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 88/248 (35%), Positives = 137/248 (55%), Gaps = 9/248 (3%)

Query: 9   RAALPSVGMVIVLLAQVSNMEVIKAAMSKGINKYVIIVYSDALSSLFFLFCSFLFHRSER 68
           R  +P   M+ +    V +  + KAA  +G + YV + Y+   ++L  L  S +F RS  
Sbjct: 13  RDVVPFTAMIAIECTTVGSSILYKAATLRGFSFYVFVFYAYVGATLVLLLLSLIFGRSRS 72

Query: 69  -PQLTFSILCSFFLLSVFGCSSQIFSFVGIQYSSPTLSTAMLNLIPAFTFVLAIIFRLEK 127
            P    S+    FLL++ G +S++    GI+YSSPTLS+A+ NL PAFTF+LAI FR+E+
Sbjct: 73  LPTAKSSLFFKIFLLALLGLTSRVAGCKGIEYSSPTLSSAISNLTPAFTFILAIFFRMEQ 132

Query: 128 LNWENKSSQAKSLGTFASIGGAFVVTFYKGPPLIGELSHSGSPRRLLLSPQLSWILGGFF 187
           +   + ++QAK +GT  SI GA V+  YKGP L+   S +        S + SWI+GG  
Sbjct: 133 VMLRSSATQAKIIGTIVSISGALVIVLYKGPKLLVAASFT--------SFESSWIIGGLL 184

Query: 188 LAAEAFMNSAWFILQALILRKFAAVLIIMFYLFFFNTILSTAFALIVVSEPSDWKLGLDI 247
           L  +  + S WFILQ  I+  +   + ++F      T++S    L+V  + + W+L    
Sbjct: 185 LGLQFLLLSVWFILQTHIMEIYPEEIAVVFCYNLCATLISGTVCLLVEKDLNSWQLKPGF 244

Query: 248 GLVAVLYS 255
            L +V+YS
Sbjct: 245 SLASVIYS 252

Arabidopsis thaliana (taxid: 3702)

>sp|Q56X95|WTR23_ARATH WAT1-related protein At3g28130 OS=Arabidopsis thaliana GN=At3g28130 PE=2 SV=1

 Score =  125 bits (313), Expect = 6e-28,   Method: Compositional matrix adjust.
 Identities = 92/259 (35%), Positives = 139/259 (53%), Gaps = 22/259 (8%)

Query: 9   RAALPSVGMVIVLLAQVSNMEVIKAAMSKGINKYVIIVYSDALSSLFFLFCS-FLFHRSE 67
           R A+    M+      V+   + KAA SKG+N Y  ++YS  + S+  L    F +    
Sbjct: 9   RDAVLLTAMLATETGNVAMNTLFKAATSKGLNSYTFLIYSYLIGSIVLLPSHIFSYRSRS 68

Query: 68  RPQLTFSILCSFFLLSVFGCSSQIFSFVGIQYSSPTLSTAMLNLIPAFTFVLAIIFRLEK 127
            P L+ SILC   +L + G +  I  F+GI+YS+PTL++A+ N+ PA TF+LAIIFR+EK
Sbjct: 69  LPSLSLSILCKIGVLGLLGSTYLITGFIGIEYSNPTLASAISNINPAITFILAIIFRMEK 128

Query: 128 LNWENKSSQAKSLGTFASIGGAFVVTFYKGPPLIGELSHSGSPRRLLLSPQL-------- 179
            +++ KSS AK +GT  S+ GA VV  Y GP +    + S  P      PQL        
Sbjct: 129 ASFKEKSSVAKMVGTIVSLVGALVVVLYHGPRV---FTPSSPPF-----PQLRQLLLPLS 180

Query: 180 ----SWILGGFFLAAEAFMNSAWFILQALILRKFAAVLIIMFYLFFFNTILSTAFALIV- 234
                WI+GG  LA +  +    FILQA I++ + A   + F+ F   +IL++   ++  
Sbjct: 181 SSNSDWIIGGCLLAIKDTLVPVAFILQAHIMKLYPAPFTVSFFYFLIASILTSLIGIVAE 240

Query: 235 VSEPSDWKLGLDIGLVAVL 253
            + PS W +  DI LV ++
Sbjct: 241 KNNPSIWIIHFDITLVCIV 259

Arabidopsis thaliana (taxid: 3702)

>sp|Q9LRS5|WTR22_ARATH WAT1-related protein At3g28100 OS=Arabidopsis thaliana GN=At3g28100 PE=2 SV=1

 Score =  124 bits (312), Expect = 7e-28,   Method: Compositional matrix adjust.
 Identities = 91/250 (36%), Positives = 135/250 (54%), Gaps = 16/250 (6%)

Query: 32  KAAMSKGINKYVIIVYSDALSSLFFLFCSFLFHRSER-PQLTFSILCSFFLLSVFGCSSQ 90
           K A SKG+N Y  + YS  L+SL  L   F   RS   P L+ SIL    LL + G    
Sbjct: 33  KVATSKGLNLYAFLGYSYLLASLLLLPSLFFTDRSRSLPPLSLSILSKIGLLGLLGSMYV 92

Query: 91  IFSFVGIQYSSPTLSTAMLNLIPAFTFVLAIIFRLEKLNWENKSSQAKSLGTFASIGGAF 150
           I  ++GI+YSSPTL++A+ N+ PA TF+LAIIFR+EK++++ +SS AK +GT  S+ GA 
Sbjct: 93  ITGYIGIEYSSPTLASAISNITPALTFILAIIFRMEKVSFKERSSVAKVMGTILSLIGAL 152

Query: 151 VVTFYKGPPLIGELSHSGSPRRL--------LLSPQLSWILGGFFLAAEAFMNSAWFILQ 202
           VV  Y GP     +  + SP  +        L S    W++GG  L       S  FILQ
Sbjct: 153 VVVLYHGP----RVFVASSPPYINFRQLSPPLSSSNSDWLIGGALLTIRDIFVSVSFILQ 208

Query: 203 ALILRKFAAVLIIMFYLFFFNTILSTAFALIV-VSEPSDWKLGLDIGLVAVLYS--VSSY 259
           A I+  + A   + F      +I+++   L+V  + PS W +  DI L+ ++    ++S 
Sbjct: 209 AKIMSTYPAAFTVSFLYIVSVSIVTSMIGLVVEKNNPSVWIIRFDITLITIVTMAIITSV 268

Query: 260 WHWVSSWLVH 269
           ++ + SW V 
Sbjct: 269 YYVIHSWTVR 278

Arabidopsis thaliana (taxid: 3702)

>sp|Q9M130|WTR29_ARATH WAT1-related protein At4g01440 OS=Arabidopsis thaliana GN=At4g01440 PE=2 SV=1

 Score =  124 bits (312), Expect = 8e-28,   Method: Compositional matrix adjust.
 Identities = 81/247 (32%), Positives = 133/247 (53%), Gaps = 5/247 (2%)

Query: 13  PSVGMVIVLLAQVSNMEVIKAAMSKGINKYVIIVYSDALSSLFFLFCSFLFHRSERPQLT 72
           P + MV++  A      ++K  +  G+N  VI  Y  A+S+LF    +F + R  RP LT
Sbjct: 10  PVIIMVMINSALGLANALVKKVLDGGVNHMVIATYRLAISTLFLAPIAFFWERKTRPTLT 69

Query: 73  FSILCSFFLLSVFGCS-SQIFSFVGIQYSSPTLSTAMLNLIPAFTFVLAIIFRLEKLNWE 131
            +IL   F  ++ G S +Q F  +G+ Y+S TL+ A +++ PA TFV+A+IFR+EKLN +
Sbjct: 70  LNILVQLFFSALVGASLTQYFFLLGLSYTSATLACAFISMTPAITFVMALIFRVEKLNMK 129

Query: 132 NKSSQAKSLGTFASIGGAFVVTFYKGPPL--IGEL-SHSGSPRRLLLSPQLSWILGGFFL 188
           +K+     +G    IGGA ++T YKG PL  + +L +H        + P+ +WI+G   L
Sbjct: 130 SKAGMGMVMGALICIGGALLLTMYKGVPLTKLRKLETHQLINNNHAMKPE-NWIIGCVLL 188

Query: 189 AAEAFMNSAWFILQALILRKFAAVLIIMFYLFFFNTILSTAFALIVVSEPSDWKLGLDIG 248
            A +    +W ++QA +  K+         L FF TI     +LI   + + W L   + 
Sbjct: 189 FAGSSCFGSWMLIQAKVNEKYPCQYSSTVVLSFFGTIQCALLSLIKSRDITAWILTDKLD 248

Query: 249 LVAVLYS 255
           +V ++Y+
Sbjct: 249 IVTIVYA 255

Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	332
255581160	356	Auxin-induced protein 5NG4, putative [Ri	0.768	0.716	0.639	6e-83
225424736	346	PREDICTED: auxin-induced protein 5NG4 [V	0.756	0.725	0.556	1e-68
356502002	351	PREDICTED: auxin-induced protein 5NG4-li	0.731	0.692	0.553	2e-68
356497781	351	PREDICTED: LOW QUALITY PROTEIN: auxin-in	0.728	0.689	0.551	9e-67
255581162	349	Auxin-induced protein 5NG4, putative [Ri	0.743	0.707	0.530	9e-63
224057230	355	predicted protein [Populus trichocarpa]	0.798	0.746	0.486	3e-62
356497783	347	PREDICTED: auxin-induced protein 5NG4-li	0.774	0.740	0.501	5e-62
357486015	598	Auxin-induced protein 5NG4 [Medicago tru	0.731	0.406	0.528	2e-61
388502250	352	unknown [Medicago truncatula]	0.731	0.690	0.528	3e-61
224099697	355	predicted protein [Populus trichocarpa]	0.789	0.738	0.490	2e-60

>gi|255581160|ref|XP_002531393.1| Auxin-induced protein 5NG4, putative [Ricinus communis] gi|223528986|gb|EEF30977.1| Auxin-induced protein 5NG4, putative [Ricinus communis]

 Score =  313 bits (802), Expect = 6e-83,   Method: Compositional matrix adjust.
 Identities = 163/255 (63%), Positives = 196/255 (76%)

Query: 1   MGVDMGSMRAALPSVGMVIVLLAQVSNMEVIKAAMSKGINKYVIIVYSDALSSLFFLFCS 60
           MG    ++R+ LP VGMV+ +LAQ SNMEV K A+S+GINKYVIIVYSDALS+L  L CS
Sbjct: 1   MGFMPCNIRSLLPFVGMVVAMLAQASNMEVTKLALSQGINKYVIIVYSDALSTLVLLPCS 60

Query: 61  FLFHRSERPQLTFSILCSFFLLSVFGCSSQIFSFVGIQYSSPTLSTAMLNLIPAFTFVLA 120
           F+ HRS+R  L FS+LC FFLLSVFG  +QI  +VG+QYSSPTL TAMLNLIPAFTF+LA
Sbjct: 61  FIIHRSDRTPLDFSLLCKFFLLSVFGWCAQICGYVGLQYSSPTLGTAMLNLIPAFTFILA 120

Query: 121 IIFRLEKLNWENKSSQAKSLGTFASIGGAFVVTFYKGPPLIGELSHSGSPRRLLLSPQLS 180
           IIFRLEKL+  +KSS AKSLGT  SI GAFVVTFY+GP + G  SH     +L  SPQ  
Sbjct: 121 IIFRLEKLDRRSKSSIAKSLGTIVSIAGAFVVTFYEGPTVFGIASHIKESHQLFHSPQFF 180

Query: 181 WILGGFFLAAEAFMNSAWFILQALILRKFAAVLIIMFYLFFFNTILSTAFALIVVSEPSD 240
           W++G  FLAAEA M+SAW+ILQ  IL+KF AVLII+ YL FFNT+LS  FALIVV + + 
Sbjct: 181 WMIGALFLAAEALMDSAWYILQTFILKKFPAVLIIICYLCFFNTVLSAIFALIVVEDRNS 240

Query: 241 WKLGLDIGLVAVLYS 255
           WK+  +IGL  +LY+
Sbjct: 241 WKIKPNIGLATILYT 255

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225424736|ref|XP_002266139.1| PREDICTED: auxin-induced protein 5NG4 [Vitis vinifera] gi|296086519|emb|CBI32108.3| unnamed protein product [Vitis vinifera]

 Score =  266 bits (679), Expect = 1e-68,   Method: Compositional matrix adjust.
 Identities = 142/255 (55%), Positives = 189/255 (74%), Gaps = 4/255 (1%)

Query: 1   MGVDMGSMRAALPSVGMVIVLLAQVSNMEVIKAAMSKGINKYVIIVYSDALSSLFFLFCS 60
           MGV MG++  +LP +GMVIV+  QV+NM V K AMS G++ +V+++YS+A+S++  L  S
Sbjct: 1   MGV-MGTV--SLPFLGMVIVVFTQVTNMIVSKMAMSNGLSSFVLVLYSNAISAVILLPLS 57

Query: 61  FLFHRSERPQLTFSILCSFFLLSVFGCSSQIFSFVGIQYSSPTLSTAMLNLIPAFTFVLA 120
            LFHRS RP LTFSILC FFLL++ GC +QIF + G+QYSSPTL +AMLNL+PAFTF+LA
Sbjct: 58  LLFHRSPRPPLTFSILCRFFLLALIGCFAQIFGYAGVQYSSPTLGSAMLNLVPAFTFILA 117

Query: 121 IIFRLEKLNWENKSSQAKSLGTFASIGGAFVVTFYKGPPLIGELSHSGSPRRLLLSPQLS 180
           +I R+EKL  +  SS AKS+G   S+ GAFVVTFYKGPP++   S S S  + + S Q  
Sbjct: 118 VICRMEKLELKKSSSLAKSVGALVSVAGAFVVTFYKGPPIMFSSSFSDSSNQ-IFSSQSH 176

Query: 181 WILGGFFLAAEAFMNSAWFILQALILRKFAAVLIIMFYLFFFNTILSTAFALIVVSEPSD 240
           W+LGGF LA E+ + S W+ILQA IL+K  AVL I F+  FF +I+S A +L+   +PS 
Sbjct: 177 WVLGGFLLADESLLASMWYILQATILKKHPAVLTITFFYCFFISIISLAISLVAERDPSA 236

Query: 241 WKLGLDIGLVAVLYS 255
           W+L LD+GL+AVLYS
Sbjct: 237 WRLKLDVGLLAVLYS 251

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356502002|ref|XP_003519811.1| PREDICTED: auxin-induced protein 5NG4-like [Glycine max]

 Score =  265 bits (677), Expect = 2e-68,   Method: Compositional matrix adjust.
 Identities = 135/244 (55%), Positives = 177/244 (72%), Gaps = 1/244 (0%)

Query: 12  LPSVGMVIVLLAQVSNMEVIKAAMSKGINKYVIIVYSDALSSLFFLFCSFLFHRSERPQL 71
           LP +GMV+V+LAQ  +M VIK AMS GINKYV++VYS ALS++  L  +   HRSERP L
Sbjct: 12  LPFLGMVLVMLAQSGSMVVIKVAMSDGINKYVMVVYSLALSTILLLPFALFLHRSERPPL 71

Query: 72  TFSILCSFFLLSVFGCSSQIFSFVGIQYSSPTLSTAMLNLIPAFTFVLAIIFRLEKLNWE 131
           TFS LC FFLL++FG S QI ++VGI  SS TL++AMLNLIPAFTF+LA+IFR+E+++W 
Sbjct: 72  TFSALCCFFLLAIFGSSGQIMAYVGIDLSSATLASAMLNLIPAFTFILALIFRMEEVHWR 131

Query: 132 NKSSQAKSLGTFASIGGAFVVTFYKGPPLIGELSHSGSPRRLLLSPQLSWILGGFFLAAE 191
           + SSQAK LGT  SIGGAFVV  YKGPP+  +   S S  +L  S Q++WILGG F   +
Sbjct: 132 HSSSQAKVLGTLISIGGAFVVILYKGPPIF-KTHWSNSSNKLQFSQQINWILGGIFCVGD 190

Query: 192 AFMNSAWFILQALILRKFAAVLIIMFYLFFFNTILSTAFALIVVSEPSDWKLGLDIGLVA 251
           + + S W+I QA +  KF AV +I+F+   F+TI    FALI V +P++W+L  DIGL+ 
Sbjct: 191 SIVCSLWYIYQASVAHKFPAVTVIVFFQLLFSTIQCAVFALIAVPDPTEWELKFDIGLIG 250

Query: 252 VLYS 255
           +LY 
Sbjct: 251 ILYQ 254

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356497781|ref|XP_003517736.1| PREDICTED: LOW QUALITY PROTEIN: auxin-induced protein 5NG4-like [Glycine max]

 Score =  259 bits (663), Expect = 9e-67,   Method: Compositional matrix adjust.
 Identities = 134/243 (55%), Positives = 176/243 (72%), Gaps = 1/243 (0%)

Query: 13  PSVGMVIVLLAQVSNMEVIKAAMSKGINKYVIIVYSDALSSLFFLFCSFLFHRSERPQLT 72
           P +GMV+ +LAQ  +M VIK AM+ GINKYV++VYS ALS++  L  +   HRSERP LT
Sbjct: 13  PFLGMVMAMLAQSGSMVVIKVAMTDGINKYVMVVYSLALSTILLLPFALFLHRSERPPLT 72

Query: 73  FSILCSFFLLSVFGCSSQIFSFVGIQYSSPTLSTAMLNLIPAFTFVLAIIFRLEKLNWEN 132
           FS LCSFFLL+ FG S QI ++VGI  SSPTL++AMLNLIPAFTF+LA+IFR+E+++W++
Sbjct: 73  FSALCSFFLLAFFGSSGQIMAYVGIDLSSPTLASAMLNLIPAFTFILALIFRMEEVHWKH 132

Query: 133 KSSQAKSLGTFASIGGAFVVTFYKGPPLIGELSHSGSPRRLLLSPQLSWILGGFFLAAEA 192
            SSQAK LGT  SI GAFVV  YKGPP+  +   S S  + L S QL+WILGG F A ++
Sbjct: 133 SSSQAKFLGTIVSIAGAFVVILYKGPPIF-KTHLSNSSNKFLFSQQLNWILGGMFCAGDS 191

Query: 193 FMNSAWFILQALILRKFAAVLIIMFYLFFFNTILSTAFALIVVSEPSDWKLGLDIGLVAV 252
            + S W+I QA +  K+ AV  I+F+   F+TI    FALIVV   ++W+L LDIGL+ +
Sbjct: 192 IVCSLWYIYQASVAYKYPAVTTIVFFQLLFSTIQCGVFALIVVQXSNEWELKLDIGLIGI 251

Query: 253 LYS 255
           +Y 
Sbjct: 252 VYQ 254

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255581162|ref|XP_002531394.1| Auxin-induced protein 5NG4, putative [Ricinus communis] gi|223528987|gb|EEF30978.1| Auxin-induced protein 5NG4, putative [Ricinus communis]

 Score =  246 bits (629), Expect = 9e-63,   Method: Compositional matrix adjust.
 Identities = 132/249 (53%), Positives = 173/249 (69%), Gaps = 2/249 (0%)

Query: 7   SMRAALPSVGMVIVLLAQVSNMEVIKAAMSKGINKYVIIVYSDALSSLFFLFCSFLFHRS 66
            M+ ALP VGMVI   AQV  M + K AMSKG++ ++ + YS+AL+SL  L  S L  R+
Sbjct: 2   GMKVALPFVGMVIAECAQVGLMIISKVAMSKGMSSFIFVCYSNALASLILLPFSLLHRRT 61

Query: 67  ERPQLTFSILCSFFLLSVFGCSSQIFSFVGIQYSSPTLSTAMLNLIPAFTFVLAIIFRLE 126
           ERP LTFSI+C FFLL +FGC +Q F + GI  SSPTL TAMLNL+P  TF+LA+ FR+E
Sbjct: 62  ERPPLTFSIVCGFFLLGLFGCLAQFFGYAGINLSSPTLGTAMLNLVPGLTFILAVAFRME 121

Query: 127 KLNWENKSSQAKSLGTFASIGGAFVVTFYKGPPLIGELSHSGSPRRLLLSPQLSWILGGF 186
           KL+    SS AKS+GT  S+GGAF++T+YKGP ++  L+ S +    LL+   +WI+GG 
Sbjct: 122 KLDGRTSSSLAKSMGTIISVGGAFILTYYKGPLVL--LTPSLNSSHQLLTQPSNWIIGGL 179

Query: 187 FLAAEAFMNSAWFILQALILRKFAAVLIIMFYLFFFNTILSTAFALIVVSEPSDWKLGLD 246
            LAA+  M SAW I+QALIL+ + A LII+F+  FF TILS    L+V  +PS W L  +
Sbjct: 180 LLAADCVMTSAWIIIQALILKIYPAELIIVFFYCFFVTILSAIVCLVVERDPSAWSLIPN 239

Query: 247 IGLVAVLYS 255
           I LV+VLYS
Sbjct: 240 IRLVSVLYS 248

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224057230|ref|XP_002299184.1| predicted protein [Populus trichocarpa] gi|222846442|gb|EEE83989.1| predicted protein [Populus trichocarpa]

 Score =  245 bits (625), Expect = 3e-62,   Method: Compositional matrix adjust.
 Identities = 131/269 (48%), Positives = 183/269 (68%), Gaps = 4/269 (1%)

Query: 5   MGSMRAALPSVGMVIVLLAQVSNMEVIKAAMSKGINKYVIIVYSDALSSLFFLFCSFLFH 64
           M    A LP VGMV+   AQ   M + KAAMS G++ +V ++YS+A++ L  L  SFLFH
Sbjct: 1   MARKVAVLPIVGMVMAECAQAGRMILGKAAMSNGMSSFVFVLYSNAIACLILLPSSFLFH 60

Query: 65  RS-ERPQLTFSILCSFFLLSVFGCSSQIFSFVGIQYSSPTLSTAMLNLIPAFTFVLAIIF 123
           RS ERP LT SI+  FFLL +FGC  Q F + GI  SSPTL TAMLNL+P  TF+LAIIF
Sbjct: 61  RSSERPPLTLSIVSGFFLLGLFGCLGQSFCYAGINLSSPTLGTAMLNLVPGLTFILAIIF 120

Query: 124 RLEKLNWENKSSQAKSLGTFASIGGAFVVTFYKGPPLIGELSHSGSPRRLLLSPQLSWIL 183
           R+E ++W++ S+ AKS+GT  SIGGAF+VT YKGP L+  L         +L  Q +W+L
Sbjct: 121 RMENVDWKSYSTLAKSMGTIVSIGGAFIVTCYKGPLLLKALPSVTKSSHQVLLQQSNWVL 180

Query: 184 GGFFLAAEAFMNSAWFILQALILRKFAAVLIIMFYLFFFNTILSTAFALIVVSEPSDWKL 243
           GG  +A +    S+W I+QALIL+K++A LI++F+ FFF+TILS+  ++++  +PS W L
Sbjct: 181 GGLLMAVDCATASSWLIVQALILKKYSAKLIVVFFHFFFSTILSSIVSVVMERDPSAWSL 240

Query: 244 GLDIGLVAVLYS---VSSYWHWVSSWLVH 269
             +I L+AVL+S    +++   V++W VH
Sbjct: 241 NSNIRLIAVLFSGILGNAFEIGVTAWCVH 269

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356497783|ref|XP_003517737.1| PREDICTED: auxin-induced protein 5NG4-like [Glycine max]

 Score =  244 bits (622), Expect = 5e-62,   Method: Compositional matrix adjust.
 Identities = 131/261 (50%), Positives = 181/261 (69%), Gaps = 4/261 (1%)

Query: 12  LPSVGMVIVLLAQVSNMEVIKAAMSKGINKYVIIVYSDALSSLFFLFCSFLFHRSERPQL 71
           LP +GM++ +L Q  +M VIK AM+ G+NKYV++VYS ALSS   L      HRSE P L
Sbjct: 12  LPFLGMLMAMLTQSGSMVVIKFAMTDGMNKYVMVVYSMALSSSILLPFVLFLHRSELPLL 71

Query: 72  TFSILCSFFLLSVFGCSSQIFSFVGIQYSSPTLSTAMLNLIPAFTFVLAIIFRLEKLNWE 131
           T   L SFFLL++F  S+ I ++VGI+ SSPTL++A+LN+IPAFTFVLA+IFR+E+++W 
Sbjct: 72  TVPALGSFFLLALFASSAHIMAYVGIELSSPTLASAILNVIPAFTFVLALIFRMEEVHWR 131

Query: 132 NKSSQAKSLGTFASIGGAFVVTFYKGPPLIGELSHSGSPRRLLLSPQLSWILGGFFLAAE 191
             SSQAK LGT  SIGGAFVV  YKGPP+    S S +  +L  S Q +WILGG FL A+
Sbjct: 132 YFSSQAKVLGTIVSIGGAFVVILYKGPPIFRTHS-SYTSNKLQFSAQPNWILGGIFLVAD 190

Query: 192 AFMNSAWFILQALILRKFAAVLIIMFYLFFFNTILSTAFALIVVSEPSDWKLGLDIGLVA 251
           +F++S W+I QA + +K+ AV +I+F+ F F+TI    FALI V +P++W+L  D GL  
Sbjct: 191 SFLSSMWYIYQASVAKKYPAVTVIVFFQFLFSTIQCGVFALIAVRDPTEWELKFDRGLSV 250

Query: 252 VLYS---VSSYWHWVSSWLVH 269
           +LY     +   + +++W VH
Sbjct: 251 ILYQAIVATMLRYTLTTWCVH 271

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357486015|ref|XP_003613295.1| Auxin-induced protein 5NG4 [Medicago truncatula] gi|355514630|gb|AES96253.1| Auxin-induced protein 5NG4 [Medicago truncatula]

 Score =  241 bits (616), Expect = 2e-61,   Method: Compositional matrix adjust.
 Identities = 129/244 (52%), Positives = 179/244 (73%), Gaps = 1/244 (0%)

Query: 12  LPSVGMVIVLLAQVSNMEVIKAAMSKGINKYVIIVYSDALSSLFFLFCSFLFHRSERPQL 71
           LP VGM+I +LAQ  +M VIK AM  G+NKYV++VYS  LSS+  L  +   +RS+RP L
Sbjct: 260 LPFVGMIISVLAQSGSMVVIKFAMKDGMNKYVMVVYSMGLSSILLLPLALFINRSQRPPL 319

Query: 72  TFSILCSFFLLSVFGCSSQIFSFVGIQYSSPTLSTAMLNLIPAFTFVLAIIFRLEKLNWE 131
           TFS L SFFLL++ G S+QI ++ GI+ SSPTL++AMLNLIPAFTFVLA+IFR+E++ W 
Sbjct: 320 TFSALWSFFLLALIGSSAQIMTYGGIELSSPTLASAMLNLIPAFTFVLALIFRMERIYWR 379

Query: 132 NKSSQAKSLGTFASIGGAFVVTFYKGPPLIGELSHSGSPRRLLLSPQLSWILGGFFLAAE 191
           + SSQAK++GT  S+ GAFVV  YKGPP++ ++  S S   L  SP L+WILGGF  A +
Sbjct: 380 HFSSQAKAIGTIVSMAGAFVVILYKGPPIL-KIHSSISYNTLQFSPNLNWILGGFLCAGD 438

Query: 192 AFMNSAWFILQALILRKFAAVLIIMFYLFFFNTILSTAFALIVVSEPSDWKLGLDIGLVA 251
           + ++S W+I Q  + +K+ AV++I+F+   F TI +  +ALIVV +PS W+L LD+GL+ 
Sbjct: 439 SLLSSMWYIYQVSVTKKYPAVIVIVFFQVVFITIQTGVYALIVVRDPSAWELKLDMGLIV 498

Query: 252 VLYS 255
           +LY 
Sbjct: 499 ILYQ 502

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388502250|gb|AFK39191.1| unknown [Medicago truncatula]

 Score =  241 bits (616), Expect = 3e-61,   Method: Compositional matrix adjust.
 Identities = 129/244 (52%), Positives = 179/244 (73%), Gaps = 1/244 (0%)

Query: 12  LPSVGMVIVLLAQVSNMEVIKAAMSKGINKYVIIVYSDALSSLFFLFCSFLFHRSERPQL 71
           LP VGM+I +LAQ  +M VIK AM  G+NKYV++VYS  LSS+  L  +   +RS+RP L
Sbjct: 14  LPFVGMIISVLAQSGSMVVIKFAMKDGMNKYVMVVYSMGLSSILLLPLALFINRSQRPPL 73

Query: 72  TFSILCSFFLLSVFGCSSQIFSFVGIQYSSPTLSTAMLNLIPAFTFVLAIIFRLEKLNWE 131
           TFS L SFFLL++ G S+QI ++ GI+ SSPTL++AMLNLIPAFTFVLA+IFR+E++ W 
Sbjct: 74  TFSALWSFFLLALIGSSAQIMTYGGIELSSPTLASAMLNLIPAFTFVLALIFRMERIYWR 133

Query: 132 NKSSQAKSLGTFASIGGAFVVTFYKGPPLIGELSHSGSPRRLLLSPQLSWILGGFFLAAE 191
           + SSQAK++GT  S+ GAFVV  YKGPP++ ++  S S   L  SP L+WILGGF  A +
Sbjct: 134 HFSSQAKAIGTIVSMAGAFVVILYKGPPIL-KIHSSISYNTLQFSPNLNWILGGFLCAGD 192

Query: 192 AFMNSAWFILQALILRKFAAVLIIMFYLFFFNTILSTAFALIVVSEPSDWKLGLDIGLVA 251
           + ++S W+I Q  + +K+ AV++I+F+   F TI +  +ALIVV +PS W+L LD+GL+ 
Sbjct: 193 SLLSSMWYIYQVSVTKKYPAVIVIVFFQVVFITIQTGVYALIVVRDPSAWELKLDMGLIV 252

Query: 252 VLYS 255
           +LY 
Sbjct: 253 ILYQ 256

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224099697|ref|XP_002311582.1| predicted protein [Populus trichocarpa] gi|222851402|gb|EEE88949.1| predicted protein [Populus trichocarpa]

 Score =  238 bits (608), Expect = 2e-60,   Method: Compositional matrix adjust.
 Identities = 133/271 (49%), Positives = 176/271 (64%), Gaps = 9/271 (3%)

Query: 7   SMRAALPSVGMVIVLLAQVSNMEVIKAAMSKGINKYVIIVYSDALSSLFFLFCSFLFHRS 66
            ++AA P VGMV+   AQV  M + KAAMS G+  ++ ++YS+AL+SL  L  SF  HRS
Sbjct: 2   GLKAAAPFVGMVMAECAQVGLMILSKAAMSDGMTNFIFVLYSNALASLILLPSSFFLHRS 61

Query: 67  ERPQLTFSILCSFFLLSVFGCS-----SQIFSFVGIQYSSPTLSTAMLNLIPAFTFVLAI 121
           ERP LTF ILC FFLL +FG +       IF + GI  SS TL TAMLNLIP  TF+LA+
Sbjct: 62  ERPPLTFPILCGFFLLGLFGYAILIYFDFIFGYAGINLSSATLGTAMLNLIPGLTFILAV 121

Query: 122 IFRLEKLNWENKSSQAKSLGTFASIGGAFVVTFYKGPPLIGELSHSGSPRRLLLSPQLSW 181
            FR+EKL+W++ S+  KS GT  S+ GAF+V +YKGPPL+   S S  P   LLS Q +W
Sbjct: 122 AFRMEKLDWKSSSALVKSTGTIVSVAGAFIVCYYKGPPLLMAPSTSNLPHE-LLSQQQNW 180

Query: 182 ILGGFFLAAEAFMNSAWFILQALILRKFAAVLIIMFYLFFFNTILSTAFALIVVSEPSDW 241
           I+GG  LA +  M SAW I+QALIL+K+ A LI++F+  F  TILST   L +  +P  W
Sbjct: 181 IIGGLLLAVDCVMASAWLIIQALILKKYPAELIVVFFYCFSVTILSTIVCLFMERDPGAW 240

Query: 242 KLGLDIGLVAVLYS---VSSYWHWVSSWLVH 269
            L   +  +AV+YS    S++   VS+W +H
Sbjct: 241 SLKPTVRWIAVVYSGVFGSAFQVGVSTWCLH 271

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	332
TAIR|locus:2091363	367	UMAMIT41 "AT3G28050" [Arabidop	0.719	0.651	0.392	3.9e-37
TAIR|locus:2091368	355	UMAMIT44 "AT3G28130" [Arabidop	0.728	0.681	0.350	4.1e-33
TAIR|locus:2130344	347	UMAMIT38 "AT4G15540" [Arabidop	0.683	0.654	0.326	6.9e-31
TAIR|locus:2173737	339	UMAMIT42 "Usually multiple aci	0.662	0.648	0.351	1.1e-30
TAIR|locus:2173752	370	UMAMIT37 "AT5G40230" [Arabidop	0.731	0.656	0.309	1.6e-29
TAIR|locus:2091383	360	UMAMIT46 "AT3G28070" [Arabidop	0.728	0.672	0.338	3.4e-29
TAIR|locus:2091338	353	UMAMIT45 "AT3G28100" [Arabidop	0.728	0.685	0.330	1.5e-28
TAIR|locus:2169414	402	UMAMIT9 "Usually multiple acid	0.680	0.562	0.302	1.9e-28
TAIR|locus:2091393	358	UMAMIT47 "AT3G28080" [Arabidop	0.662	0.614	0.336	6.4e-28
TAIR|locus:2049847	380	UMAMIT12 "Usually multiple aci	0.719	0.628	0.317	6.4e-28

TAIR|locus:2091363 UMAMIT41 "AT3G28050" [Arabidopsis thaliana (taxid:3702)]

 Score = 399 (145.5 bits), Expect = 3.9e-37, P = 3.9e-37
 Identities = 97/247 (39%), Positives = 132/247 (53%)

Query:     9 RAALPSVGMVIVLLAQVSNMEVIKAAMSKGINKYVIIVYSDAXXXXXXXXXXXXXHRSER 68
             R  LP   +VI+  A V    + KAA  KG++ +V IVYS                RS  
Sbjct:     8 REVLPVTALVIMECANVGLNTLFKAATLKGMSFHVFIVYSYGLAALLLLPSLFCSFRSRT 67

Query:    69 -PQLTFSILCSFFLLSVFGCSSQIFSFVGIQYSSPTLSTAMLNLIPAFTFVLAIIFRLEK 127
              P + FSIL    LL + GC S I  + GI YSSPTL++A+ NL PAFTF+LA++FR+E 
Sbjct:    68 LPPMNFSILYKIVLLGIIGCCSNIMGYTGINYSSPTLASAISNLTPAFTFLLAVVFRMES 127

Query:   128 LNWENKSSQAKSLGTFASIGGAFVVTFYKGPPLIGEXXXXXXXXXXXXXXXXXWILGGFF 187
             ++++  SS AK LGT  SIGGAF+VT Y GP +I +                 WILG  F
Sbjct:   128 VSFKRTSSVAKMLGTVVSIGGAFIVTLYNGPVVIAKSPPSVSLRSQSTNPN--WILGAGF 185

Query:   188 LAAEAFMNSAWFILQALILRKFAAVL-IIMFYLF--FFNTILSTAFALIVVSEPSDWKLG 244
             LA E F    W+I+Q  I+R++ A   ++ FY     F T L T F     ++   WK+ 
Sbjct:   186 LAVEYFCVPLWYIVQTQIMREYPAEFTVVCFYSIGVSFWTALVTLFT--EGNDLGAWKIK 243

Query:   245 LDIGLVA 251
              +I LV+
Sbjct:   244 PNIALVS 250

GO:0008150 "biological_process" evidence=ND

GO:0016020 "membrane" evidence=IEA;ISS

TAIR|locus:2091368 UMAMIT44 "AT3G28130" [Arabidopsis thaliana (taxid:3702)]

 Score = 361 (132.1 bits), Expect = 4.1e-33, P = 4.1e-33
 Identities = 87/248 (35%), Positives = 128/248 (51%)

Query:     9 RAALPSVGMVIVLLAQVSNMEVIKAAMSKGINKYVIIVYSDAXXXXXXXXXXXXXHRSER 68
             R A+    M+      V+   + KAA SKG+N Y  ++YS               +RS  
Sbjct:     9 RDAVLLTAMLATETGNVAMNTLFKAATSKGLNSYTFLIYSYLIGSIVLLPSHIFSYRSRS 68

Query:    69 -PQLTFSILCSFFLLSVFGCSSQIFSFVGIQYSSPTLSTAMLNLIPAFTFVLAIIFRLEK 127
              P L+ SILC   +L + G +  I  F+GI+YS+PTL++A+ N+ PA TF+LAIIFR+EK
Sbjct:    69 LPSLSLSILCKIGVLGLLGSTYLITGFIGIEYSNPTLASAISNINPAITFILAIIFRMEK 128

Query:   128 LNWENKSSQAKSLGTFASIGGAFVVTFYKGP----PLIGEXXXXXXXXXXXXXXXXXWIL 183
              +++ KSS AK +GT  S+ GA VV  Y GP    P                     WI+
Sbjct:   129 ASFKEKSSVAKMVGTIVSLVGALVVVLYHGPRVFTPSSPPFPQLRQLLLPLSSSNSDWII 188

Query:   184 GGFFLAAEAFMNSAWFILQALILRKFAAVLIIMFYLFFFNTILSTAFALIVV-SEPSDWK 242
             GG  LA +  +    FILQA I++ + A   + F+ F   +IL++   ++   + PS W 
Sbjct:   189 GGCLLAIKDTLVPVAFILQAHIMKLYPAPFTVSFFYFLIASILTSLIGIVAEKNNPSIWI 248

Query:   243 LGLDIGLV 250
             +  DI LV
Sbjct:   249 IHFDITLV 256

GO:0008150 "biological_process" evidence=ND

GO:0009507 "chloroplast" evidence=ISM

GO:0016020 "membrane" evidence=IEA

TAIR|locus:2130344 UMAMIT38 "AT4G15540" [Arabidopsis thaliana (taxid:3702)]

 Score = 340 (124.7 bits), Expect = 6.9e-31, P = 6.9e-31
 Identities = 77/236 (32%), Positives = 119/236 (50%)

Query:     9 RAALPSVGMVIVLLAQVSNMEVIKAAMSKGINKYVIIVYSDAXXXXXXXXXXXXXHRSER 68
             R  +P   M+ +    V +  + KAA  +G + YV + Y+                RS  
Sbjct:    13 RDVVPFTAMIAIECTTVGSSILYKAATLRGFSFYVFVFYAYVGATLVLLLLSLIFGRSRS 72

Query:    69 -PQLTFSILCSFFLLSVFGCSSQIFSFVGIQYSSPTLSTAMLNLIPAFTFVLAIIFRLEK 127
              P    S+    FLL++ G +S++    GI+YSSPTLS+A+ NL PAFTF+LAI FR+E+
Sbjct:    73 LPTAKSSLFFKIFLLALLGLTSRVAGCKGIEYSSPTLSSAISNLTPAFTFILAIFFRMEQ 132

Query:   128 LNWENKSSQAKSLGTFASIGGAFVVTFYKGPPLIGEXXXXXXXXXXXXXXXXXWILGGFF 187
             +   + ++QAK +GT  SI GA V+  YKGP L+                   WI+GG  
Sbjct:   133 VMLRSSATQAKIIGTIVSISGALVIVLYKGPKLL--------VAASFTSFESSWIIGGLL 184

Query:   188 LAAEAFMNSAWFILQALILRKFAAVLIIMFYLFFFNTILSTAFALIVVSEPSDWKL 243
             L  +  + S WFILQ  I+  +   + ++F      T++S    L+V  + + W+L
Sbjct:   185 LGLQFLLLSVWFILQTHIMEIYPEEIAVVFCYNLCATLISGTVCLLVEKDLNSWQL 240

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

GO:0016020 "membrane" evidence=IEA

TAIR|locus:2173737 UMAMIT42 "Usually multiple acids move in and out Transporters 42" [Arabidopsis thaliana (taxid:3702)]

 Score = 338 (124.0 bits), Expect = 1.1e-30, P = 1.1e-30
 Identities = 83/236 (35%), Positives = 125/236 (52%)

Query:    17 MVIVLLAQVSNMEVIKAAMSKGINKYVIIVYSDAXXXXXXXXXXXXXHRSER-PQLTFSI 75
             MV+   + V    ++KAA SKG++ +V++VYS                RS   P LTFSI
Sbjct:    17 MVVTEFSNVGVNTLVKAATSKGLSPFVVLVYSYTFGSLLLLPLTFFSFRSRSLPPLTFSI 76

Query:    76 LCSFFLLSVFGCSSQIFSFVGIQYSSPTLSTAMLNLIPAFTFVLAIIFRLEKLNWENKSS 135
             LC+  +L +   + QI  + GI+YSSPTLS+AM N+ PAFTF+LA++FR+E ++   KSS
Sbjct:    77 LCNMGILGLIASAFQILGYNGIKYSSPTLSSAMSNVNPAFTFILAVVFRMENISLGKKSS 136

Query:   136 QAKSLGTFASIGGAFVVTFYKGPPLIGEXXXXXXXXXXXXXXXXXWILGGFFLAAEAFMN 195
              AK LGT  SI GA VVT Y GP L+                   WI+GG  LA +  + 
Sbjct:   137 VAKVLGTILSIIGALVVTLYHGPMLMSSHSD--------------WIIGGGLLALQYILV 182

Query:   196 SAWFILQALILRKF-AAVLIIMFYLFFFNTILSTAFALIVVSEPSDWKLGLDIGLV 250
             S  +++ A  + ++ +AV++ + +      + +    L     P  W +  DI L+
Sbjct:   183 SVSYLVMAHTMGRYPSAVVVTLVHNVCIAVVCAFVSLLAEKDNPKAWVIRFDITLI 238

GO:0016020 "membrane" evidence=IEA

GO:0006863 "purine nucleobase transport" evidence=RCA

TAIR|locus:2173752 UMAMIT37 "AT5G40230" [Arabidopsis thaliana (taxid:3702)]

 Score = 327 (120.2 bits), Expect = 1.6e-29, P = 1.6e-29
 Identities = 77/249 (30%), Positives = 122/249 (48%)

Query:     9 RAALPSVGMVIVLLAQVSNMEVIKAAMSKGINKYVIIVYSDAXXXXXXXXXXXXXHRSER 68
             R  +P   MV V    V +  + KAA  +G++ YV + Y+                RS+R
Sbjct:    17 RDVVPFTAMVAVECVTVGSNTLFKAATLRGLSFYVFVFYTYVVATLVLLPLSLIFGRSKR 76

Query:    69 -PQLTFSILCSFFLLSVFGCSSQIFSFVGIQYSSPTLSTAMLNLIPAFTFVLAIIFRLEK 127
              P     +  + FLL++ G  S I    GI+YSSPTL++A+ NL PAFTF LA+IFR+E+
Sbjct:    77 LPSAKTPVFFNIFLLALVGFMSLIVGCKGIEYSSPTLASAISNLTPAFTFTLAVIFRMEQ 136

Query:   128 LNWENKSSQAKSLGTFASIGGAFVVTFYKGPPLIGEXXXX-----XXXXXXXXXXXXXWI 182
             +   + ++QAK +GT  SI GA VV  YKGP ++ +                      WI
Sbjct:   137 IVLRSSATQAKIIGTIVSISGALVVILYKGPKVLTDASLTPPSPTISLYQHLTSFDSSWI 196

Query:   183 LGGFFLAAEAFMNSAWFILQALILRKFAAVLIIMFYLFFFNTILSTAFALIVVSEPSDWK 242
             +GG  LA +  + S W+ILQ  ++  +   + ++F      T++S    L    + + + 
Sbjct:   197 IGGLLLATQYLLVSVWYILQTRVMELYPEEITVVFLYNLCATLISAPVCLFAEKDLNSFI 256

Query:   243 LGLDIGLVA 251
             L   + L +
Sbjct:   257 LKPGVSLAS 265

GO:0003674 "molecular_function" evidence=ND

GO:0016020 "membrane" evidence=IEA;ISS

TAIR|locus:2091383 UMAMIT46 "AT3G28070" [Arabidopsis thaliana (taxid:3702)]

 Score = 324 (119.1 bits), Expect = 3.4e-29, P = 3.4e-29
 Identities = 84/248 (33%), Positives = 123/248 (49%)

Query:     9 RAALPSVGMVIVLLAQVSNMEVIKAAMSKGINKYVIIVYSDAXXXXXXXXXXXXXHRSER 68
             R A+    M++V  + V    + K A SKG+N Y  + YS               +RS  
Sbjct:    13 REAVFLTAMLVVETSVVGISTLFKFATSKGLNIYPFLGYSYLLASLLLLPSLFFTNRSSS 72

Query:    69 -PQLTFSILCSFFLLSVFGCSSQIFSFVGIQYSSPTLSTAMLNLIPAFTFVLAIIFRLEK 127
              P L+ SIL    LL   G    I  ++GI+YSSPTL++A+ N+ PA TF+LAIIFR+EK
Sbjct:    73 LPPLSVSILSKIGLLGFLGSMYVITGYIGIEYSSPTLASAINNITPALTFILAIIFRMEK 132

Query:   128 LNWENKSSQAKSLGTFASIGGAFVVTFYKGPPLIGEXX----XXXXXXXXXXXXXXXWIL 183
             ++++ +SS AK +GT  S+ GA VV FY GP +                        W++
Sbjct:   133 VSFKERSSLAKLMGTILSLIGALVVIFYHGPRVFLASSPPYVNFRQFSPPLSSSNSDWLI 192

Query:   184 GGFFLAAEAFMNSAWFILQALILRKFAAVLIIMF-YLFFFNTILSTAFALIVVSEPSDWK 242
             GG  L  +    S  FILQA I+  + A   + F Y    + + ST   ++  + PS W 
Sbjct:   193 GGALLTMQGIFVSVSFILQAHIMSVYPAAFRVSFLYTVCVSIVTSTIGLVVEKNNPSVWI 252

Query:   243 LGLDIGLV 250
             +  DI L+
Sbjct:   253 IHFDITLI 260

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

GO:0009507 "chloroplast" evidence=ISM

GO:0016020 "membrane" evidence=IEA;ISS

TAIR|locus:2091338 UMAMIT45 "AT3G28100" [Arabidopsis thaliana (taxid:3702)]

 Score = 318 (117.0 bits), Expect = 1.5e-28, P = 1.5e-28
 Identities = 82/248 (33%), Positives = 119/248 (47%)

Query:     9 RAALPSVGMVIVLLAQVSNMEVIKAAMSKGINKYVIIVYSDAXXXXXXXXXXXXXHRSER 68
             R A+    M+      V    + K A SKG+N Y  + YS                RS  
Sbjct:    10 REAVFLTAMLATETGVVGISTLFKVATSKGLNLYAFLGYSYLLASLLLLPSLFFTDRSRS 69

Query:    69 -PQLTFSILCSFFLLSVFGCSSQIFSFVGIQYSSPTLSTAMLNLIPAFTFVLAIIFRLEK 127
              P L+ SIL    LL + G    I  ++GI+YSSPTL++A+ N+ PA TF+LAIIFR+EK
Sbjct:    70 LPPLSLSILSKIGLLGLLGSMYVITGYIGIEYSSPTLASAISNITPALTFILAIIFRMEK 129

Query:   128 LNWENKSSQAKSLGTFASIGGAFVVTFYKGPPLIGEXX----XXXXXXXXXXXXXXXWIL 183
             ++++ +SS AK +GT  S+ GA VV  Y GP +                        W++
Sbjct:   130 VSFKERSSVAKVMGTILSLIGALVVVLYHGPRVFVASSPPYINFRQLSPPLSSSNSDWLI 189

Query:   184 GGFFLAAEAFMNSAWFILQALILRKFAAVLIIMFYLFFFNTILSTAFALIVV-SEPSDWK 242
             GG  L       S  FILQA I+  + A   + F      +I+++   L+V  + PS W 
Sbjct:   190 GGALLTIRDIFVSVSFILQAKIMSTYPAAFTVSFLYIVSVSIVTSMIGLVVEKNNPSVWI 249

Query:   243 LGLDIGLV 250
             +  DI L+
Sbjct:   250 IRFDITLI 257

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

GO:0016020 "membrane" evidence=IEA

TAIR|locus:2169414 UMAMIT9 "Usually multiple acids move in and out Transporters 9" [Arabidopsis thaliana (taxid:3702)]

 Score = 317 (116.6 bits), Expect = 1.9e-28, P = 1.9e-28
 Identities = 72/238 (30%), Positives = 122/238 (51%)

Query:    26 SNMEVI-KAAMSKGINKYVIIVYSDAXXXXXXXXXXXXXHRSERPQLTFSILCSFFLLSV 84
             + M +I K +++ G++ YV++VY  A              R  +P++TFSI    F+L +
Sbjct:    30 AGMNIITKISLNTGMSHYVLVVYRHAIATAVIAPFAFFFERKAQPKITFSIFMQLFILGL 89

Query:    85 FG-CSSQIFSFVGIQYSSPTLSTAMLNLIPAFTFVLAIIFRLEKLNWENKSSQAKSLGTF 143
              G    Q F ++G++Y+SPT S AM N++PA TF+LA++FR+E L+ +    QAK  GT 
Sbjct:    90 LGPVIDQNFYYMGLKYTSPTFSCAMSNMLPAMTFILAVLFRMEMLDLKKLWCQAKIAGTV 149

Query:   144 ASIGGAFVVTFYKGPPL---------IGEXXXXXXXXXXXXXXXXXWILGGFFLAAEAFM 194
              ++ GA ++T YKGP +         I +                 ++ G   L      
Sbjct:   150 VTVAGAMLMTIYKGPIVELFWTKYMHIQDSSHANTTSSKNSSSDKEFLKGSILLIFATLA 209

Query:   195 NSAWFILQALILRKFAA-VLIIMFYLFFFNTILSTAFALIVVSEPSDWKLGLDIGLVA 251
              ++ F+LQA IL+ +A   L +   + F  T+ + A   ++   PS W++G D+ L+A
Sbjct:   210 WASLFVLQAKILKTYAKHQLSLTTLICFIGTLQAVAVTFVMEHNPSAWRIGWDMNLLA 267

GO:0009507 "chloroplast" evidence=ISM

GO:0016020 "membrane" evidence=IEA;ISS

TAIR|locus:2091393 UMAMIT47 "AT3G28080" [Arabidopsis thaliana (taxid:3702)]

 Score = 312 (114.9 bits), Expect = 6.4e-28, P = 6.4e-28
 Identities = 76/226 (33%), Positives = 115/226 (50%)

Query:    30 VIKAAMSKGINKYVIIVYSDAXXXXXXXXXXXXXHRSER-PQLTFSILCSFFLLSVFGCS 88
             + K A SKG+N Y  + YS               +RS   P L+ SIL    LL   G  
Sbjct:    31 LFKVATSKGLNIYPFLSYSYLLASLLLLPSLFFTNRSRSLPPLSASILSKIGLLGFLGSM 90

Query:    89 SQIFSFVGIQYSSPTLSTAMLNLIPAFTFVLAIIFRLEKLNWENKSSQAKSLGTFASIGG 148
               I   +GI+YS+PTL++A+ N++PA TF+LA+IFR+EK++++ +SS AK +GT  S+ G
Sbjct:    91 YVITGGIGIEYSNPTLASAIGNIVPALTFILAVIFRMEKVSFKERSSVAKVMGTILSLIG 150

Query:   149 AFVVTFYKGPPLIGEXX----XXXXXXXXXXXXXXXWILGGFFLAAEAFMNSAWFILQAL 204
             AFVV FY GP +                        W++GG  L  +    S  FILQ  
Sbjct:   151 AFVVIFYHGPRVFVASSPPYLNFRQLSPPLSSSKSDWLIGGAILTIQGIFVSVSFILQTH 210

Query:   205 ILRKFA-AVLIIMFYLFFFNTILSTAFALIVVSEPSDWKLGLDIGL 249
             I+R++  A  + + Y+   + + S    ++  + PS W +  DI L
Sbjct:   211 IMREYPEAFTVSILYILCISIVTSMIGLVVEKNNPSIWIIHFDITL 256

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

GO:0009507 "chloroplast" evidence=ISM

GO:0016020 "membrane" evidence=IEA

GO:0019761 "glucosinolate biosynthetic process" evidence=RCA

TAIR|locus:2049847 UMAMIT12 "Usually multiple acids move in and out Transporters 12" [Arabidopsis thaliana (taxid:3702)]

 Score = 312 (114.9 bits), Expect = 6.4e-28, P = 6.4e-28
 Identities = 79/249 (31%), Positives = 125/249 (50%)

Query:     8 MRAALPSVGMVIVLLAQVSNMEVI-KAAMSKGINKYVIIVYSDAXXXXXXXXXXXXXHRS 66
             M  A P + MV VL   ++ M+++ KA ++KG++ YV++VY  A              + 
Sbjct:    10 MEKARPFISMV-VLQVGLAGMDILSKAVLNKGMSNYVLVVYRHAVATIVMAPFAFYFDKK 68

Query:    67 ERPQLTFSILCSFFLLSVFGCSSQIFS----FVGIQYSSPTLSTAMLNLIPAFTFVLAII 122
              RP++T  I   FF +S+ G    +      ++G++Y++ T +TAM N++PA TFVLA I
Sbjct:    69 VRPKMTLMI---FFKISLLGLLEPVIDQNLYYLGMKYTTATFATAMYNVLPAITFVLAYI 125

Query:   123 FRLEKLNWENKSSQAKSLGTFASIGGAFVVTFYKGPPLIGEXXXXXXXXXXXXXXXXXWI 182
             F LE++      S  K +GT A++GGA ++T  KGP L                     I
Sbjct:   126 FGLERVKLRCIRSTGKVVGTLATVGGAMIMTLVKGPVLDLFWTKGVSAHNTAGTDIHSAI 185

Query:   183 LGGFFLAAEAFMNSAWFILQALILRKFAAVLIIMFYLFFFNTILSTAFALIVVS-EPSDW 241
              G   +    F  + + ILQA+ LR + A L +  ++    TI  TA AL++    PS W
Sbjct:   186 KGAVLVTIGCFSYACFMILQAITLRTYPAELSLTAWICLMGTIEGTAVALVMEKGNPSAW 245

Query:   242 KLGLDIGLV 250
              +G D  L+
Sbjct:   246 AIGWDTKLL 254

GO:0005737 "cytoplasm" evidence=ISM

GO:0016020 "membrane" evidence=IEA;ISS

GO:0019761 "glucosinolate biosynthetic process" evidence=RCA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: GSVIVG00028878001 SubName- Full=Chromosome chr1 scaffold_46, whole genome shotgun sequence; (364 aa) (Vitis vinifera)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	332
PLN00411	358	PLN00411, PLN00411, nodulin MtN21 family protein;	8e-41

>gnl|CDD|177805 PLN00411, PLN00411, nodulin MtN21 family protein; Provisional

 Score =  145 bits (368), Expect = 8e-41
 Identities = 99/272 (36%), Positives = 149/272 (54%), Gaps = 16/272 (5%)

Query: 9   RAALPSVGMVIVLLAQVSNMEVIKAAMSKGINKYVIIVYSDALSSLFFLFCSFLFHRSER 68
           R A+    M+    + V    + K A SKG+N Y  + YS  L+SL  L   F  +RS  
Sbjct: 10  REAVFLTAMLATETSVVGISTLFKVATSKGLNIYPFLGYSYLLASLLLLPSLFFTNRSRS 69

Query: 69  -PQLTFSILCSFFLLSVFGCSSQIFSFVGIQYSSPTLSTAMLNLIPAFTFVLAIIFRLEK 127
            P L+ SIL    LL   G    I  ++GI+YS+PTL++A+ N+ PA TF+LAIIFR+EK
Sbjct: 70  LPPLSVSILSKIGLLGFLGSMYVITGYIGIEYSNPTLASAISNITPALTFILAIIFRMEK 129

Query: 128 LNWENKSSQAKSLGTFASIGGAFVVTFYKGPPLIGELSHSGSPRRL---LLSPQLS---- 180
           ++++ +SS AK +GT  S+ GA VV FY GP     +  + SP  L    LSP LS    
Sbjct: 130 VSFKERSSVAKVMGTILSLIGALVVIFYHGP----RVFVASSPPYLNFRQLSPPLSSSNS 185

Query: 181 -WILGGFFLAAEAFMNSAWFILQALILRKFAAVLIIMFYLFFFNTILSTAFALIV-VSEP 238
            W++GG  L  +    S  FILQA I+ ++ A   + F      +I+++   L+V  + P
Sbjct: 186 DWLIGGALLTIQGIFVSVSFILQAHIMSEYPAAFTVSFLYTVCVSIVTSMIGLVVEKNNP 245

Query: 239 SDWKLGLDIGLVAVLYS--VSSYWHWVSSWLV 268
           S W +  DI L+ ++    ++S ++ + SW V
Sbjct: 246 SVWIIHFDITLITIVTMAIITSVYYVIHSWTV 277

Length = 358

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	332
PLN00411	358	nodulin MtN21 family protein; Provisional	100.0
PRK11453	299	O-acetylserine/cysteine export protein; Provisiona	99.97
PRK11272	292	putative DMT superfamily transporter inner membran	99.97
PRK11689	295	aromatic amino acid exporter; Provisional	99.97
PRK15430	296	putative chloramphenical resistance permease RarD;	99.96
TIGR00950	260	2A78 Carboxylate/Amino Acid/Amine Transporter.	99.96
PRK10532	293	threonine and homoserine efflux system; Provisiona	99.95
TIGR00688	256	rarD rarD protein. This uncharacterized protein is	99.94
TIGR00817	302	tpt Tpt phosphate/phosphoenolpyruvate translocator	99.92
TIGR03340	281	phn_DUF6 phosphonate utilization associated putati	99.9
PTZ00343	350	triose or hexose phosphate/phosphate translocator;	99.9
COG0697	292	RhaT Permeases of the drug/metabolite transporter	99.85
PF06027	334	DUF914: Eukaryotic protein of unknown function (DU	99.78
COG2962	293	RarD Predicted permeases [General function predict	99.75
TIGR00776	290	RhaT RhaT L-rhamnose-proton symporter family prote	99.74
COG5006	292	rhtA Threonine/homoserine efflux transporter [Amin	99.73
KOG4510	346	consensus Permease of the drug/metabolite transpor	99.64
PF00892	126	EamA: EamA-like transporter family; InterPro: IPR0	99.52
COG2510	140	Predicted membrane protein [Function unknown]	99.5
PF08449	303	UAA: UAA transporter family; InterPro: IPR013657 T	99.36
KOG2765	416	consensus Predicted membrane protein [Function unk	99.34
TIGR00950	260	2A78 Carboxylate/Amino Acid/Amine Transporter.	99.26
PF13536	113	EmrE: Multidrug resistance efflux transporter	99.14
PF04142	244	Nuc_sug_transp: Nucleotide-sugar transporter; Inte	99.06
PRK10532	293	threonine and homoserine efflux system; Provisiona	98.93
PRK11272	292	putative DMT superfamily transporter inner membran	98.92
KOG1441	316	consensus Glucose-6-phosphate/phosphate and phosph	98.87
PRK11689	295	aromatic amino acid exporter; Provisional	98.82
PLN00411	358	nodulin MtN21 family protein; Provisional	98.77
KOG2234	345	consensus Predicted UDP-galactose transporter [Car	98.76
COG2510	140	Predicted membrane protein [Function unknown]	98.75
TIGR03340	281	phn_DUF6 phosphonate utilization associated putati	98.71
PRK11453	299	O-acetylserine/cysteine export protein; Provisiona	98.67
PF00892	126	EamA: EamA-like transporter family; InterPro: IPR0	98.67
TIGR00817	302	tpt Tpt phosphate/phosphoenolpyruvate translocator	98.65
KOG2766	336	consensus Predicted membrane protein [Function unk	98.54
PF03151	153	TPT: Triose-phosphate Transporter family; InterPro	98.52
PTZ00343	350	triose or hexose phosphate/phosphate translocator;	98.44
TIGR00776	290	RhaT RhaT L-rhamnose-proton symporter family prote	98.35
COG0697	292	RhaT Permeases of the drug/metabolite transporter	98.34
KOG1444	314	consensus Nucleotide-sugar transporter VRG4/SQV-7	98.28
PRK15430	296	putative chloramphenical resistance permease RarD;	98.27
PRK15051	111	4-amino-4-deoxy-L-arabinose-phosphoundecaprenol fl	98.25
PF06800	269	Sugar_transport: Sugar transport protein; InterPro	98.18
KOG1443	349	consensus Predicted integral membrane protein [Fun	98.17
KOG1580	337	consensus UDP-galactose transporter related protei	97.94
KOG1581	327	consensus UDP-galactose transporter related protei	97.91
PRK02971	129	4-amino-4-deoxy-L-arabinose-phosphoundecaprenol fl	97.9
PF03151	153	TPT: Triose-phosphate Transporter family; InterPro	97.83
TIGR00688	256	rarD rarD protein. This uncharacterized protein is	97.82
KOG4314	290	consensus Predicted carbohydrate/phosphate translo	97.8
KOG3912	372	consensus Predicted integral membrane protein [Gen	97.72
PRK13499	345	rhamnose-proton symporter; Provisional	97.67
COG5006	292	rhtA Threonine/homoserine efflux transporter [Amin	97.65
PF06027	334	DUF914: Eukaryotic protein of unknown function (DU	97.6
PF06800	269	Sugar_transport: Sugar transport protein; InterPro	97.45
PF08449	303	UAA: UAA transporter family; InterPro: IPR013657 T	97.23
PF05653	300	Mg_trans_NIPA: Magnesium transporter NIPA; InterPr	97.2
KOG1442	347	consensus GDP-fucose transporter [Carbohydrate tra	97.06
PRK10650	109	multidrug efflux system protein MdtI; Provisional	96.63
PRK10452	120	multidrug efflux system protein MdtJ; Provisional	96.4
KOG1441	316	consensus Glucose-6-phosphate/phosphate and phosph	96.38
COG2076	106	EmrE Membrane transporters of cations and cationic	96.36
PRK11431	105	multidrug efflux system protein; Provisional	96.28
PRK09541	110	emrE multidrug efflux protein; Reviewed	96.22
PRK13499	345	rhamnose-proton symporter; Provisional	96.11
PF10639	113	UPF0546: Uncharacterised protein family UPF0546; I	96.08
TIGR00803	222	nst UDP-galactose transporter. NSTs generally appe	96.01
PF13536	113	EmrE: Multidrug resistance efflux transporter	95.71
COG2962	293	RarD Predicted permeases [General function predict	95.58
KOG1582	367	consensus UDP-galactose transporter related protei	95.57
PF04657	138	DUF606: Protein of unknown function, DUF606; Inter	95.57
PF00893	93	Multi_Drug_Res: Small Multidrug Resistance protein	95.46
COG5070	309	VRG4 Nucleotide-sugar transporter [Carbohydrate tr	95.09
KOG2765	416	consensus Predicted membrane protein [Function unk	94.44
COG4975	288	GlcU Putative glucose uptake permease [Carbohydrat	93.99
PRK15051	111	4-amino-4-deoxy-L-arabinose-phosphoundecaprenol fl	93.71
KOG4510	346	consensus Permease of the drug/metabolite transpor	93.6
KOG2922	335	consensus Uncharacterized conserved protein [Funct	92.86
TIGR00803	222	nst UDP-galactose transporter. NSTs generally appe	91.86
COG3238	150	Uncharacterized protein conserved in bacteria [Fun	91.09
COG4975	288	GlcU Putative glucose uptake permease [Carbohydrat	90.66
KOG1580	337	consensus UDP-galactose transporter related protei	90.65
KOG1581	327	consensus UDP-galactose transporter related protei	90.2
PRK02971	129	4-amino-4-deoxy-L-arabinose-phosphoundecaprenol fl	89.3
PF00893	93	Multi_Drug_Res: Small Multidrug Resistance protein	88.46
KOG1444	314	consensus Nucleotide-sugar transporter VRG4/SQV-7	88.34
PRK10452	120	multidrug efflux system protein MdtJ; Provisional	87.97
PRK10650	109	multidrug efflux system protein MdtI; Provisional	87.77
KOG1583	330	consensus UDP-N-acetylglucosamine transporter [Car	87.6
PRK09541	110	emrE multidrug efflux protein; Reviewed	85.89
COG2076	106	EmrE Membrane transporters of cations and cationic	84.86
COG5070	309	VRG4 Nucleotide-sugar transporter [Carbohydrate tr	84.1
PRK11431	105	multidrug efflux system protein; Provisional	83.55
PF04657	138	DUF606: Protein of unknown function, DUF606; Inter	80.66

>PLN00411 nodulin MtN21 family protein; Provisional

Probab=100.00  E-value=7.5e-36  Score=284.76  Aligned_cols=300  Identities=32%  Similarity=0.509  Sum_probs=236.0

Q ss_pred             chhhHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHhhcCC-CCCCCHHHHHHHHHHHHHHH
Q 020034            9 RAALPSVGMVIVLLAQVSNMEVIKAAMSKGINKYVIIVYSDALSSLFFLFCSFLFHRSE-RPQLTFSILCSFFLLSVFGC   87 (332)
Q Consensus         9 ~~~~~~l~ll~~~~~wg~~~~~~K~~l~~~~~p~~~~~~R~~~a~i~ll~~~~~~~r~~-~~~~~~~~~~~l~~~g~~g~   87 (332)
                      |+.++++.|+..++.+++..++.|.+++.+++|+.+.++|+.+|+++++++.+.++|++ +++.+++++..+++.|++|.
T Consensus        10 ~~~~~~~~~~~~q~~~~~~~~~~k~a~~~G~~~~~~~~~R~~iA~l~Ll~~~~~~~~~~~~~~~~~~~~~~l~l~g~~g~   89 (358)
T PLN00411         10 REAVFLTAMLATETSVVGISTLFKVATSKGLNIYPFLGYSYLLASLLLLPSLFFTNRSRSLPPLSVSILSKIGLLGFLGS   89 (358)
T ss_pred             hccchHHHHHHHHHHHHHHHHHHHHHHHCCCCccHHHHHHHHHHHHHHHHHHHHHHHhcccCcchHHHHHHHHHHHHHHH
Confidence            47789999999999999999999999999999999999999999999999987654432 34456788889999999986


Q ss_pred             HHHHHHHHHhhccChhhHhHhhcchhHHHHHHHHHHHhhcccccccccccchhhhhhhhhchhheeeccCCCCcCCC--C
Q 020034           88 SSQIFSFVGIQYSSPTLSTAMLNLIPAFTFVLAIIFRLEKLNWENKSSQAKSLGTFASIGGAFVVTFYKGPPLIGEL--S  165 (332)
Q Consensus        88 ~~~~l~~~gl~~~sa~~A~~i~~~~P~~~~lls~l~~~Ek~~~~~~~s~~~~~gi~l~l~Gv~ll~~~~g~~~~~~~--~  165 (332)
                      .++.+++.|++|+++++|+++.+++|+++++++++++.|+++.+++.++.|++|++++++|+.++..++++.....+  .
T Consensus        90 ~~~~~~~~gl~~tsa~~asll~~~~P~~~~lla~~~~~e~~~~~er~~~~~~~G~~l~~~Gv~ll~~~~g~~~~~~~~~~  169 (358)
T PLN00411         90 MYVITGYIGIEYSNPTLASAISNITPALTFILAIIFRMEKVSFKERSSVAKVMGTILSLIGALVVIFYHGPRVFVASSPP  169 (358)
T ss_pred             HHHHHHHHHHhhccHHHHHHHHHhhHHHHHHHHHHHHhchhhhcccccHHHHHHHHHHHHHHHHHHHccCcccccccccc
Confidence            67779999999999999999999999999999999987777777777788899999999999887755443210000  0


Q ss_pred             CCCC--CccccCCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHcCC-CCCcc
Q 020034          166 HSGS--PRRLLLSPQLSWILGGFFLAAEAFMNSAWFILQALILRKFAAVLIIMFYLFFFNTILSTAFALIVVSE-PSDWK  242 (332)
Q Consensus       166 ~~~~--~~~~~~~~~~~~~~G~~l~L~aa~~~A~~~v~~~~~~~~~~~~~~i~~~~~l~g~i~~~~~~~~~~~~-~~~~~  242 (332)
                      +-|.  ..........++..|+++.++|+++||+|++++|+..++++++...++|++.++++...+.+...+.+ ...|.
T Consensus       170 ~~~~~~~~~~~~~~~~~~~lG~~l~l~aa~~wa~~~il~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~l~~~~~~~~~~~  249 (358)
T PLN00411        170 YLNFRQLSPPLSSSNSDWLIGGALLTIQGIFVSVSFILQAHIMSEYPAAFTVSFLYTVCVSIVTSMIGLVVEKNNPSVWI  249 (358)
T ss_pred             cccccccccccCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHhHHHHHHHHHHHHHHHHHHHHHccCCcccce
Confidence            0000  00000011223456999999999999999999999988887667888899999988887777765532 23332


Q ss_pred             ccchhhhHHHHhhh--hhhHHHHHHHHhhcc-h--hhhhcchHHHHHHHHHHHHhCCCccc----------cceeeeeec
Q 020034          243 LGLDIGLVAVLYSV--SSYWHWVSSWLVHMV-P--VENWTSLCINVQALGHCLLYCHGCRH----------CRRRFLSWK  307 (332)
Q Consensus       243 ~~~~~~~~~ll~~g--t~v~~~l~~~a~~~~-~--~s~~~~l~pv~~~i~~~l~lgE~~~~----------~~~~~~~~~  307 (332)
                      ..++.....++|.|  +.++|.+|++++++. |  ++++.+++|++++++|++++||+++.          .|.+.+.|.
T Consensus       250 ~~~~~~~~~i~y~~i~t~lay~lw~~~v~~~ga~~as~~~~L~PV~a~llg~l~LgE~lt~~~~iG~~LIl~Gv~l~~~~  329 (358)
T PLN00411        250 IHFDITLITIVTMAIITSVYYVIHSWTVRHKGPLYLAIFKPLSILIAVVMGAIFLNDSLYLGCLIGGILITLGFYAVMWG  329 (358)
T ss_pred             eccchHHHHHHHHHHHHHHHHHHHHHHHhccCchHHHHHHhHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHHHhh
Confidence            22222344566766  778999999999999 7  99999999999999999999999975          566666665


Q ss_pred             c
Q 020034          308 F  308 (332)
Q Consensus       308 ~  308 (332)
                      +
T Consensus       330 ~  330 (358)
T PLN00411        330 K  330 (358)
T ss_pred             h
Confidence            4

>PRK11453 O-acetylserine/cysteine export protein; Provisional

Probab=99.97  E-value=5.8e-29  Score=232.81  Aligned_cols=251  Identities=17%  Similarity=0.122  Sum_probs=190.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHHH-HHHHHH
Q 020034           14 SVGMVIVLLAQVSNMEVIKAAMSKGINKYVIIVYSDALSSLFFLFCSFLFHRSERPQLTFSILCSFFLLSVFG-CSSQIF   92 (332)
Q Consensus        14 ~l~ll~~~~~wg~~~~~~K~~l~~~~~p~~~~~~R~~~a~i~ll~~~~~~~r~~~~~~~~~~~~~l~~~g~~g-~~~~~l   92 (332)
                      .+..++++++||++++++|..++ ++||..+.++|+.++++.++++.  . ++   +.+++   .....|++. ..++.+
T Consensus         6 ~l~~l~~~~~Wg~~~~~~k~~~~-~~~p~~~~~~R~~~a~~~l~~~~--~-~~---~~~~~---~~~~~g~~~~~~~~~~   75 (299)
T PRK11453          6 GVLALLVVVVWGLNFVVIKVGLH-NMPPLMLAGLRFMLVAFPAIFFV--A-RP---KVPLN---LLLGYGLTISFGQFAF   75 (299)
T ss_pred             HHHHHHHHHHHhhhHHHHHHHHh-cCCHHHHHHHHHHHHHHHHHHHh--c-CC---CCchH---HHHHHHHHHHHHHHHH
Confidence            46688899999999999999887 49999999999999887776543  1 11   12222   344456655 566678


Q ss_pred             HHHHhhc-cChhhHhHhhcchhHHHHHHHHHHHhhcccccccccccchhhhhhhhhchhheeeccCCCCcCCCCCCCCCc
Q 020034           93 SFVGIQY-SSPTLSTAMLNLIPAFTFVLAIIFRLEKLNWENKSSQAKSLGTFASIGGAFVVTFYKGPPLIGELSHSGSPR  171 (332)
Q Consensus        93 ~~~gl~~-~sa~~A~~i~~~~P~~~~lls~l~~~Ek~~~~~~~s~~~~~gi~l~l~Gv~ll~~~~g~~~~~~~~~~~~~~  171 (332)
                      ++.+++| .++++++++.+++|+++.+++++++|||+++|+      ++|++++++|+.++.. ++.+            
T Consensus        76 ~~~~~~~~~~a~~a~~l~~~~pi~~~ll~~~~l~e~~~~~~------~~~~~l~~~Gv~ll~~-~~~~------------  136 (299)
T PRK11453         76 LFCAINFGMPAGLASLVLQAQAFFTIVLGAFTFGERLQGKQ------LAGIALAIFGVLVLIE-DSLN------------  136 (299)
T ss_pred             HHHHHHhcCCHHHHHHHHHhHHHHHHHHHHHHhcCcCcHHH------HHHHHHHHHhHHHhcc-ccCC------------
Confidence            8899998 588999999999999999999999999998764      9999999999988762 1100            


Q ss_pred             cccCCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHhcch--HHHHHHHHHHHHHHHHHHHHHHHcCCC---CCccccch
Q 020034          172 RLLLSPQLSWILGGFFLAAEAFMNSAWFILQALILRKFAA--VLIIMFYLFFFNTILSTAFALIVVSEP---SDWKLGLD  246 (332)
Q Consensus       172 ~~~~~~~~~~~~G~~l~L~aa~~~A~~~v~~~~~~~~~~~--~~~i~~~~~l~g~i~~~~~~~~~~~~~---~~~~~~~~  246 (332)
                          . ......|+++.++++++||.|.+++|+..++.++  ......+++..+.+.....+...+.+.   ..+...+.
T Consensus       137 ----~-~~~~~~G~~l~l~aal~~a~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  211 (299)
T PRK11453        137 ----G-QHVAMLGFMLTLAAAFSWACGNIFNKKIMSHSTRPAVMSLVVWSALIPIIPFFVASLILDGSATMIHSLVTIDM  211 (299)
T ss_pred             ----C-cchhHHHHHHHHHHHHHHHHHHHHHHHHhcccCccchhHHHHHHHHHHHHHHHHHHHHhcCchhhhhhhccCCH
Confidence                0 1112469999999999999999999997655432  234456666666655555444444321   11111122


Q ss_pred             hhhHHHHhhh---hhhHHHHHHHHhhcc-h--hhhhcchHHHHHHHHHHHHhCCCccc
Q 020034          247 IGLVAVLYSV---SSYWHWVSSWLVHMV-P--VENWTSLCINVQALGHCLLYCHGCRH  298 (332)
Q Consensus       247 ~~~~~ll~~g---t~v~~~l~~~a~~~~-~--~s~~~~l~pv~~~i~~~l~lgE~~~~  298 (332)
                      ..+..++|.|   |+++|.+|++++++. +  ++.+.+++|++++++|++++||+++.
T Consensus       212 ~~~~~l~~l~i~~t~~~~~l~~~~l~~~~a~~~s~~~~l~Pv~a~~~~~l~lgE~~~~  269 (299)
T PRK11453        212 TTILSLMYLAFVATIVGYGIWGTLLGRYETWRVAPLSLLVPVVGLASAALLLDERLTG  269 (299)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHhCCCccH
Confidence            4577788887   999999999999999 6  99999999999999999999999975

>PRK11272 putative DMT superfamily transporter inner membrane protein; Provisional

Probab=99.97  E-value=2.5e-28  Score=227.80  Aligned_cols=251  Identities=11%  Similarity=0.024  Sum_probs=201.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHHH-HHHHH
Q 020034           13 PSVGMVIVLLAQVSNMEVIKAAMSKGINKYVIIVYSDALSSLFFLFCSFLFHRSERPQLTFSILCSFFLLSVFG-CSSQI   91 (332)
Q Consensus        13 ~~l~ll~~~~~wg~~~~~~K~~l~~~~~p~~~~~~R~~~a~i~ll~~~~~~~r~~~~~~~~~~~~~l~~~g~~g-~~~~~   91 (332)
                      -...+++..++||++++++|..++ ++||.+++++|+.+++++++++....  +++ ..+++++......|.++ ..++.
T Consensus         9 ~~~~~~~~~~iWg~~~~~~K~~~~-~~~p~~~~~~R~~~a~l~ll~~~~~~--~~~-~~~~~~~~~~~~~g~~~~~~~~~   84 (292)
T PRK11272          9 LFGALFALYIIWGSTYLVIRIGVE-SWPPLMMAGVRFLIAGILLLAFLLLR--GHP-LPTLRQWLNAALIGLLLLAVGNG   84 (292)
T ss_pred             HHHHHHHHHHHHhhHHHHHHHHhc-cCCHHHHHHHHHHHHHHHHHHHHHHh--CCC-CCcHHHHHHHHHHHHHHHHHHHH
Confidence            355778899999999999999887 69999999999999999999876542  222 22456777888888887 78888


Q ss_pred             HHHHHh-hccChhhHhHhhcchhHHHHHHHHHHHhhcccccccccccchhhhhhhhhchhheeeccCCCCcCCCCCCCCC
Q 020034           92 FSFVGI-QYSSPTLSTAMLNLIPAFTFVLAIIFRLEKLNWENKSSQAKSLGTFASIGGAFVVTFYKGPPLIGELSHSGSP  170 (332)
Q Consensus        92 l~~~gl-~~~sa~~A~~i~~~~P~~~~lls~l~~~Ek~~~~~~~s~~~~~gi~l~l~Gv~ll~~~~g~~~~~~~~~~~~~  170 (332)
                      +++.+. ++++++.++++.++.|+++.+++.+ +|||+++++      ++|++++++|+.++... + +           
T Consensus        85 ~~~~~~~~~~~a~~a~~l~~~~Pl~~~lla~~-~~e~~~~~~------~~~~~la~~Gv~ll~~~-~-~-----------  144 (292)
T PRK11272         85 MVTVAEHQNVPSGIAAVVVATVPLFTLCFSRL-FGIRTRKLE------WLGIAIGLAGIVLLNSG-G-N-----------  144 (292)
T ss_pred             HHHHHHHccCcHHHHHHHHHHHHHHHHHHHHH-hcccCchhH------HHHHHHHHHhHHHHhcC-c-c-----------
Confidence            999999 9999999999999999999999986 699998764      99999999999876421 1 0           


Q ss_pred             ccccCCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHcCCCCCccccchhhhH
Q 020034          171 RRLLLSPQLSWILGGFFLAAEAFMNSAWFILQALILRKFAAVLIIMFYLFFFNTILSTAFALIVVSEPSDWKLGLDIGLV  250 (332)
Q Consensus       171 ~~~~~~~~~~~~~G~~l~L~aa~~~A~~~v~~~~~~~~~~~~~~i~~~~~l~g~i~~~~~~~~~~~~~~~~~~~~~~~~~  250 (332)
                            .+ +...|+++.++|+++||.|.+..||..++  ++...+.+++.++++.+.+.....+.+....  .+...+.
T Consensus       145 ------~~-~~~~G~l~~l~a~~~~a~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~  213 (292)
T PRK11272        145 ------LS-GNPWGAILILIASASWAFGSVWSSRLPLP--VGMMAGAAEMLAAGVVLLIASLLSGERLTAL--PTLSGFL  213 (292)
T ss_pred             ------cc-cchHHHHHHHHHHHHHHHHHHHHHhcCCC--cchHHHHHHHHHHHHHHHHHHHHcCCccccc--CCHHHHH
Confidence                  01 12479999999999999999998886543  2455678888899888877765443221111  1223456


Q ss_pred             HHHhhh---hhhHHHHHHHHhhcc-h--hhhhcchHHHHHHHHHHHHhCCCccc
Q 020034          251 AVLYSV---SSYWHWVSSWLVHMV-P--VENWTSLCINVQALGHCLLYCHGCRH  298 (332)
Q Consensus       251 ~ll~~g---t~v~~~l~~~a~~~~-~--~s~~~~l~pv~~~i~~~l~lgE~~~~  298 (332)
                      .++|.|   +.++|.+|++++++. +  ++.+.+++|+++++++++++||+++.
T Consensus       214 ~i~~l~i~~s~~~~~l~~~~~~~~~~~~~s~~~~l~Pi~a~i~~~~~l~E~~t~  267 (292)
T PRK11272        214 ALGYLAVFGSIIAISAYMYLLRNVRPALATSYAYVNPVVAVLLGTGLGGETLSP  267 (292)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHcCCCCcH
Confidence            666666   889999999999999 6  99999999999999999999999974

>PRK11689 aromatic amino acid exporter; Provisional

Probab=99.97  E-value=1.2e-28  Score=230.28  Aligned_cols=258  Identities=14%  Similarity=0.073  Sum_probs=187.8

Q ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHHH-HH
Q 020034           10 AALPSVGMVIVLLAQVSNMEVIKAAMSKGINKYVIIVYSDALSSLFFLFCSFLFHRSERPQLTFSILCSFFLLSVFG-CS   88 (332)
Q Consensus        10 ~~~~~l~ll~~~~~wg~~~~~~K~~l~~~~~p~~~~~~R~~~a~i~ll~~~~~~~r~~~~~~~~~~~~~l~~~g~~g-~~   88 (332)
                      +.++++.++++.++||++++.+|.++++ +||..++++|+.+++++++++.  .+++ .++   +++ +....+.++ ..
T Consensus         2 ~~~~~l~~l~a~~~Wg~~~~~~k~~~~~-~~P~~~~~~R~~~a~l~l~~~~--~~~~-~~~---~~~-~~~~~~~l~~~~   73 (295)
T PRK11689          2 SQKATLIGLIAILLWSTMVGLIRGVSES-LGPVGGAAMIYSVSGLLLLLTV--GFPR-LRQ---FPK-RYLLAGGLLFVS   73 (295)
T ss_pred             CcchhHHHHHHHHHHHHHHHHHHHHHcc-CChHHHHHHHHHHHHHHHHHHc--cccc-ccc---ccH-HHHHHHhHHHHH
Confidence            4567889999999999999999998874 9999999999999999988762  1111 111   112 223344445 77


Q ss_pred             HHHHHHHHhhc----cChhhHhHhhcchhHHHHHHHHHHHhhcccccccccccchhhhhhhhhchhheeeccCCCCcCCC
Q 020034           89 SQIFSFVGIQY----SSPTLSTAMLNLIPAFTFVLAIIFRLEKLNWENKSSQAKSLGTFASIGGAFVVTFYKGPPLIGEL  164 (332)
Q Consensus        89 ~~~l~~~gl~~----~sa~~A~~i~~~~P~~~~lls~l~~~Ek~~~~~~~s~~~~~gi~l~l~Gv~ll~~~~g~~~~~~~  164 (332)
                      ++.+++.++++    +++++++++.++.|+++.+++++++|||++++      |++|++++++|++++... +.....  
T Consensus        74 ~~~~~~~a~~~~~~~~~a~~a~~l~~~~Pi~~~ll~~~~~~e~~~~~------~~~g~~l~~~Gv~li~~~-~~~~~~--  144 (295)
T PRK11689         74 YEICLALSLGYANTRRQAIEVGMVNYLWPSLTILFAVLFNGQKANWL------LIPGLLLALAGVAWVLGG-DNGLSL--  144 (295)
T ss_pred             HHHHHHHHHHHhhccccchHHHHHHHHhHHHHHHHHHHHhcCCccHH------HHHHHHHHHHhHhheecC-Cccchh--
Confidence            78888888764    57788899999999999999999999999875      499999999999887622 110000  


Q ss_pred             CCCCCCccccCCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHcCCCCCcccc
Q 020034          165 SHSGSPRRLLLSPQLSWILGGFFLAAEAFMNSAWFILQALILRKFAAVLIIMFYLFFFNTILSTAFALIVVSEPSDWKLG  244 (332)
Q Consensus       165 ~~~~~~~~~~~~~~~~~~~G~~l~L~aa~~~A~~~v~~~~~~~~~~~~~~i~~~~~l~g~i~~~~~~~~~~~~~~~~~~~  244 (332)
                        +   +  ......+...|+++.++|+++||.|+++.||..++. ++....   ...+++.+.+.....+.+..+++  
T Consensus       145 --~---~--~~~~~~~~~~G~~~~l~aa~~~A~~~v~~k~~~~~~-~~~~~~---~~~~~~~l~~~~~~~~~~~~~~~--  211 (295)
T PRK11689        145 --A---E--LINNIASNPLSYGLAFIGAFIWAAYCNVTRKYARGK-NGITLF---FILTALALWIKYFLSPQPAMVFS--  211 (295)
T ss_pred             --h---h--hhhccccChHHHHHHHHHHHHHHHHHHHHhhccCCC-CchhHH---HHHHHHHHHHHHHHhcCccccCC--
Confidence              0   0  000001224699999999999999999999986665 455432   23334444443333322111222  


Q ss_pred             chhhhHHHHhhh--hhhHHHHHHHHhhcc-h--hhhhcchHHHHHHHHHHHHhCCCccc
Q 020034          245 LDIGLVAVLYSV--SSYWHWVSSWLVHMV-P--VENWTSLCINVQALGHCLLYCHGCRH  298 (332)
Q Consensus       245 ~~~~~~~ll~~g--t~v~~~l~~~a~~~~-~--~s~~~~l~pv~~~i~~~l~lgE~~~~  298 (332)
                      . ..+..+++.|  ++++|.+|++++|+. |  ++.+.+++|++++++|++++||+++.
T Consensus       212 ~-~~~~~l~~~~~~t~~~~~l~~~al~~~~a~~~s~~~~l~Pv~a~i~~~~~lgE~~~~  269 (295)
T PRK11689        212 L-PAIIKLLLAAAAMGFGYAAWNVGILHGNMTLLATASYFTPVLSAALAALLLSTPLSF  269 (295)
T ss_pred             H-HHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHhHHHHHHHHHHHHhCCCCcH
Confidence            2 3466666766  999999999999999 6  99999999999999999999999974

>PRK15430 putative chloramphenical resistance permease RarD; Provisional

Probab=99.96  E-value=9.4e-28  Score=224.36  Aligned_cols=253  Identities=11%  Similarity=-0.009  Sum_probs=184.8

Q ss_pred             chhhHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHhhcCCC--C-CCCHHHHHHHHHHHHH
Q 020034            9 RAALPSVGMVIVLLAQVSNMEVIKAAMSKGINKYVIIVYSDALSSLFFLFCSFLFHRSER--P-QLTFSILCSFFLLSVF   85 (332)
Q Consensus         9 ~~~~~~l~ll~~~~~wg~~~~~~K~~l~~~~~p~~~~~~R~~~a~i~ll~~~~~~~r~~~--~-~~~~~~~~~l~~~g~~   85 (332)
                      ++.|++++++++.++||.+++++|.. + ++||.++.++|+.++.++++++...++++..  + ..+++++... ..+.+
T Consensus         5 ~~~~g~~~~l~a~~~wg~~~~~~k~~-~-~~~~~~~~~~R~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~   81 (296)
T PRK15430          5 QTRQGVLLALAAYFIWGIAPAYFKLI-Y-YVPADEILTHRVIWSFFFMVVLMSICRQWSYLKTLIQTPQKIFML-AVSAV   81 (296)
T ss_pred             hhhhHHHHHHHHHHHHHHHHHHHHHh-c-CCCHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHcCHHHHHHH-HHHHH
Confidence            66789999999999999999999975 4 5999999999999999988877544321111  0 1133444333 35555


Q ss_pred             H-HHHHHHHHHHhhccChhhHhHhhcchhHHHHHHHHHHHhhcccccccccccchhhhhhhhhchhheeeccCCCCcCCC
Q 020034           86 G-CSSQIFSFVGIQYSSPTLSTAMLNLIPAFTFVLAIIFRLEKLNWENKSSQAKSLGTFASIGGAFVVTFYKGPPLIGEL  164 (332)
Q Consensus        86 g-~~~~~l~~~gl~~~sa~~A~~i~~~~P~~~~lls~l~~~Ek~~~~~~~s~~~~~gi~l~l~Gv~ll~~~~g~~~~~~~  164 (332)
                      + ..++.++++|++++++++++++.++.|+++++++++++|||+++++      ++|++++++|++++....        
T Consensus        82 ~~~~~~~~~~~a~~~~~~~~a~~l~~~~Pi~v~l~~~~~l~E~~~~~~------~~g~~l~~~Gv~li~~~~--------  147 (296)
T PRK15430         82 LIGGNWLLFIWAVNNHHMLEASLGYFINPLVNIVLGMIFLGERFRRMQ------WLAVILAICGVLVQLWTF--------  147 (296)
T ss_pred             HHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHhcCCCcHHH------HHHHHHHHHHHHHHHHHc--------
Confidence            5 8899999999999999999999999999999999999999998765      999999999998875110        


Q ss_pred             CCCCCCccccCCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHhc-chHHHHHHHHHHHHHHHHHHHHHHHcCCCCCccc
Q 020034          165 SHSGSPRRLLLSPQLSWILGGFFLAAEAFMNSAWFILQALILRKF-AAVLIIMFYLFFFNTILSTAFALIVVSEPSDWKL  243 (332)
Q Consensus       165 ~~~~~~~~~~~~~~~~~~~G~~l~L~aa~~~A~~~v~~~~~~~~~-~~~~~i~~~~~l~g~i~~~~~~~~~~~~~~~~~~  243 (332)
                                   +..    ..+.++++++||.|+++.|+..++. .+....+.+++.++.....+..   +.+...+..
T Consensus       148 -------------~~~----~~~~l~aa~~~a~~~i~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~  207 (296)
T PRK15430        148 -------------GSL----PIIALGLAFSFAFYGLVRKKIAVEAQTGMLIETMWLLPVAAIYLFAIA---DSSTSHMGQ  207 (296)
T ss_pred             -------------CCc----cHHHHHHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHHHHHHHHHHc---cCCcccccC
Confidence                         001    1457889999999999988864322 1233444555555554432221   111111111


Q ss_pred             cchhhhHHHHhhh--hhhHHHHHHHHhhcc-h--hhhhcchHHHHHHHHHHHHhCCCccc
Q 020034          244 GLDIGLVAVLYSV--SSYWHWVSSWLVHMV-P--VENWTSLCINVQALGHCLLYCHGCRH  298 (332)
Q Consensus       244 ~~~~~~~~ll~~g--t~v~~~l~~~a~~~~-~--~s~~~~l~pv~~~i~~~l~lgE~~~~  298 (332)
                      .+...+..+++.|  +.++|.+|++++++. |  ++.+.+++|++++++||+++||+++.
T Consensus       208 ~~~~~~~~~~~~g~~t~i~~~~~~~a~~~~~a~~~s~~~~l~Pv~a~~~g~l~l~E~~~~  267 (296)
T PRK15430        208 NPMSLNLLLIAAGIVTTVPLLCFTAAATRLRLSTLGFFQYIGPTLMFLLAVTFYGEKPGA  267 (296)
T ss_pred             CcHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHcCCCCH
Confidence            1111122233334  889999999999999 6  99999999999999999999999974

>TIGR00950 2A78 Carboxylate/Amino Acid/Amine Transporter

Probab=99.96  E-value=7.7e-27  Score=213.37  Aligned_cols=238  Identities=16%  Similarity=0.118  Sum_probs=192.9

Q ss_pred             HHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHHH-HHHHHHHHHHhhccCh
Q 020034           24 QVSNMEVIKAAMSKGINKYVIIVYSDALSSLFFLFCSFLFHRSERPQLTFSILCSFFLLSVFG-CSSQIFSFVGIQYSSP  102 (332)
Q Consensus        24 wg~~~~~~K~~l~~~~~p~~~~~~R~~~a~i~ll~~~~~~~r~~~~~~~~~~~~~l~~~g~~g-~~~~~l~~~gl~~~sa  102 (332)
                      ||.+++.+|..+++..||....+.|+..+.+++.++...  |     .+++++......|.++ .+++.++++|++|+++
T Consensus         1 Wg~~~~~~k~~~~~~~~~~~~~~~r~~~~~l~l~~~~~~--~-----~~~~~~~~~~~~~~~~~~l~~~~~~~a~~~~~~   73 (260)
T TIGR00950         1 WGTTGVVIGQYLEGQVPLYFAVFRRLIFALLLLLPLLRR--R-----PPLKRLLRLLLLGALQIGVFYVLYFVAVKRLPV   73 (260)
T ss_pred             CcchHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHh--c-----cCHhHHHHHHHHHHHHHHHHHHHHHHHHHhcCh
Confidence            899999999998877899999999999998888876432  2     2345566777888888 8999999999999999


Q ss_pred             hhHhHhhcchhHHHHHHHHHHHhhcccccccccccchhhhhhhhhchhheeeccCCCCcCCCCCCCCCccccCCCCCcch
Q 020034          103 TLSTAMLNLIPAFTFVLAIIFRLEKLNWENKSSQAKSLGTFASIGGAFVVTFYKGPPLIGELSHSGSPRRLLLSPQLSWI  182 (332)
Q Consensus       103 ~~A~~i~~~~P~~~~lls~l~~~Ek~~~~~~~s~~~~~gi~l~l~Gv~ll~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~  182 (332)
                      ++++++.++.|+++.+++.+++|||+++++      ++|++++++|+.++. .++ +                  ..+..
T Consensus        74 ~~~~ii~~~~P~~~~~~~~l~~~e~~~~~~------~~gi~i~~~Gv~li~-~~~-~------------------~~~~~  127 (260)
T TIGR00950        74 GEAALLLYLAPLYVTLLSDLMGKERPRKLV------LLAAVLGLAGAVLLL-SDG-N------------------LSINP  127 (260)
T ss_pred             hhhHHHHhhhHHHHHHHHHHHccCCCcHHH------HHHHHHHHHhHHhhc-cCC-c------------------ccccH
Confidence            999999999999999999999999998764      999999999998875 211 0                  11235


Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHhcc-hHHHHHHHHHHHHHHHHHHHHHHHcCCCCCccccchhhhHHHHhhh---hh
Q 020034          183 LGGFFLAAEAFMNSAWFILQALILRKFA-AVLIIMFYLFFFNTILSTAFALIVVSEPSDWKLGLDIGLVAVLYSV---SS  258 (332)
Q Consensus       183 ~G~~l~L~aa~~~A~~~v~~~~~~~~~~-~~~~i~~~~~l~g~i~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~g---t~  258 (332)
                      .|+.+.++++++|+.|.+..|+..++.+ ++...+.+++.++++.+.+.....+.+. ..   +...+..+++.+   +.
T Consensus       128 ~G~~~~l~a~~~~a~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~-~~---~~~~~~~~~~~~~~~~~  203 (260)
T TIGR00950       128 AGLLLGLGSGISFALGTVLYKRLVKKEGPELLQFTGWVLLLGALLLLPFAWFLGPNP-QA---LSLQWGALLYLGLIGTA  203 (260)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhHHhhcCCchHHHHHHHHHHHHHHHHHHHHHhcCCCC-Cc---chHHHHHHHHHHHHHHH
Confidence            7999999999999999999999876653 2345555788899888888766543221 11   123455556555   78


Q ss_pred             hHHHHHHHHhhcc-h--hhhhcchHHHHHHHHHHHHhCCCccc
Q 020034          259 YWHWVSSWLVHMV-P--VENWTSLCINVQALGHCLLYCHGCRH  298 (332)
Q Consensus       259 v~~~l~~~a~~~~-~--~s~~~~l~pv~~~i~~~l~lgE~~~~  298 (332)
                      ++|.+|++++++. +  ++.+.+++|+++++++++++||+++.
T Consensus       204 ~~~~~~~~a~~~~~~~~~s~~~~~~pv~~~ll~~~~~~E~~~~  246 (260)
T TIGR00950       204 LAYFLWNKGLTLVDPSAASILALAEPLVALLLGLLILGETLSL  246 (260)
T ss_pred             HHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHHHhCCCCCH
Confidence            9999999999999 6  99999999999999999999999974

>PRK10532 threonine and homoserine efflux system; Provisional

Probab=99.95  E-value=2.2e-26  Score=214.86  Aligned_cols=250  Identities=8%  Similarity=0.011  Sum_probs=194.3

Q ss_pred             cchhhHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHHHH
Q 020034            8 MRAALPSVGMVIVLLAQVSNMEVIKAAMSKGINKYVIIVYSDALSSLFFLFCSFLFHRSERPQLTFSILCSFFLLSVFGC   87 (332)
Q Consensus         8 ~~~~~~~l~ll~~~~~wg~~~~~~K~~l~~~~~p~~~~~~R~~~a~i~ll~~~~~~~r~~~~~~~~~~~~~l~~~g~~g~   87 (332)
                      -.+.+++.++++++++|+.+.+++|.++++ +||.++.++|+.+++++++++...  ++  .+.+++++..+...|++..
T Consensus         8 ~~~~~~~~~~~la~~~~~~~~~~~K~~~~~-~~~~~~~~~R~~~a~l~l~~~~~~--~~--~~~~~~~~~~~~~~g~~~~   82 (293)
T PRK10532          8 LPVWLPILLLLIAMASIQSGASLAKSLFPL-VGAPGVTALRLALGTLILIAIFKP--WR--LRFAKEQRLPLLFYGVSLG   82 (293)
T ss_pred             cccchHHHHHHHHHHHHHhhHHHHHHHHHH-cCHHHHHHHHHHHHHHHHHHHHhH--Hh--ccCCHHHHHHHHHHHHHHH
Confidence            456889999999999999999999999875 999999999999999998876422  11  1344677777888888777


Q ss_pred             HHHHHHHHHhhccChhhHhHhhcchhHHHHHHHHHHHhhcccccccccccchhhhhhhhhchhheeeccCCCCcCCCCCC
Q 020034           88 SSQIFSFVGIQYSSPTLSTAMLNLIPAFTFVLAIIFRLEKLNWENKSSQAKSLGTFASIGGAFVVTFYKGPPLIGELSHS  167 (332)
Q Consensus        88 ~~~~l~~~gl~~~sa~~A~~i~~~~P~~~~lls~l~~~Ek~~~~~~~s~~~~~gi~l~l~Gv~ll~~~~g~~~~~~~~~~  167 (332)
                      ..+.+++++++|++++.++++.++.|+++.+++    +||.+        +..++.++++|+.++. ..+.+        
T Consensus        83 ~~~~~~~~al~~~~~~~a~~l~~t~Pi~~~ll~----~~~~~--------~~~~~~i~~~Gv~li~-~~~~~--------  141 (293)
T PRK10532         83 GMNYLFYLSIQTVPLGIAVALEFTGPLAVALFS----SRRPV--------DFVWVVLAVLGLWFLL-PLGQD--------  141 (293)
T ss_pred             HHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHh----cCChH--------HHHHHHHHHHHHheee-ecCCC--------
Confidence            778889999999999999999999999998876    24321        2456788899998765 21211        


Q ss_pred             CCCccccCCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHcCCCCCccccchh
Q 020034          168 GSPRRLLLSPQLSWILGGFFLAAEAFMNSAWFILQALILRKFAAVLIIMFYLFFFNTILSTAFALIVVSEPSDWKLGLDI  247 (332)
Q Consensus       168 ~~~~~~~~~~~~~~~~G~~l~L~aa~~~A~~~v~~~~~~~~~~~~~~i~~~~~l~g~i~~~~~~~~~~~~~~~~~~~~~~  247 (332)
                              . +.....|+++.++++++||.|.+..|+..++.+ +..+ .++++++++.+.+.....+. ...++  . .
T Consensus       142 --------~-~~~~~~G~ll~l~aa~~~a~~~v~~r~~~~~~~-~~~~-~~~~~~~~~~l~~~~~~~~~-~~~~~--~-~  206 (293)
T PRK10532        142 --------V-SHVDLTGAALALGAGACWAIYILSGQRAGAEHG-PATV-AIGSLIAALIFVPIGALQAG-EALWH--W-S  206 (293)
T ss_pred             --------c-ccCChHHHHHHHHHHHHHHHHHHHHHHHhccCC-chHH-HHHHHHHHHHHHHHHHHccC-cccCC--H-H
Confidence                    0 111246999999999999999999999877764 6665 56677788777776654332 11111  1 2


Q ss_pred             hhHHHHhhh---hhhHHHHHHHHhhcc-h--hhhhcchHHHHHHHHHHHHhCCCccc
Q 020034          248 GLVAVLYSV---SSYWHWVSSWLVHMV-P--VENWTSLCINVQALGHCLLYCHGCRH  298 (332)
Q Consensus       248 ~~~~ll~~g---t~v~~~l~~~a~~~~-~--~s~~~~l~pv~~~i~~~l~lgE~~~~  298 (332)
                      .+..++|.|   |.++|.+|++++++. +  ++.+.++||++++++|++++||+++.
T Consensus       207 ~~~~~l~lgv~~t~~~~~l~~~~~~~~~a~~as~~~~l~Pv~a~l~~~l~lgE~~~~  263 (293)
T PRK10532        207 ILPLGLAVAILSTALPYSLEMIALTRLPTRTFGTLMSMEPALAAVSGMIFLGETLTL  263 (293)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhcChhHHHHHHHhHHHHHHHHHHHHhCCCCcH
Confidence            233445666   899999999999999 6  99999999999999999999999974

>TIGR00688 rarD rarD protein

Probab=99.94  E-value=1.3e-25  Score=205.49  Aligned_cols=240  Identities=11%  Similarity=0.011  Sum_probs=174.1

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHhhcCC----C-CCCCH-HHHHHHHHHHHH
Q 020034           12 LPSVGMVIVLLAQVSNMEVIKAAMSKGINKYVIIVYSDALSSLFFLFCSFLFHRSE----R-PQLTF-SILCSFFLLSVF   85 (332)
Q Consensus        12 ~~~l~ll~~~~~wg~~~~~~K~~l~~~~~p~~~~~~R~~~a~i~ll~~~~~~~r~~----~-~~~~~-~~~~~l~~~g~~   85 (332)
                      |+++++++++++||.+++++|. .+ ++||.++.++|+.++.++++++....+|++    + ++.++ +++..+...|++
T Consensus         2 ~g~~~~i~a~~~wg~~~~~~k~-~~-~~~~~~i~~~R~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~   79 (256)
T TIGR00688         2 KGIIVSLLASFLFGYMYYYSKL-LK-PLPATDILGHRMIWSFPFMLLSVTLFRQWAALIERLKRIQKRPLILSLLLCGLL   79 (256)
T ss_pred             CcHHHHHHHHHHHHHHHHHHHH-hc-cCCHHHHHHHHHHHHHHHHHHHHHHHcchHHHHHHHhCcccchHHHHHHHHHHH
Confidence            5889999999999999999998 45 499999999999999998887654432211    0 11112 234456677777


Q ss_pred             HHHHHHHHHHHhhccChhhHhHhhcchhHHHHHHHHHHHhhcccccccccccchhhhhhhhhchhheeeccCCCCcCCCC
Q 020034           86 GCSSQIFSFVGIQYSSPTLSTAMLNLIPAFTFVLAIIFRLEKLNWENKSSQAKSLGTFASIGGAFVVTFYKGPPLIGELS  165 (332)
Q Consensus        86 g~~~~~l~~~gl~~~sa~~A~~i~~~~P~~~~lls~l~~~Ek~~~~~~~s~~~~~gi~l~l~Gv~ll~~~~g~~~~~~~~  165 (332)
                      ...++.+++++++++++++|+++.+++|+++++++++++|||+++++      ++|++++++|++++...++        
T Consensus        80 ~~~~~~~~~~a~~~~~~~~a~~l~~~~Pi~~~lla~~~l~Ek~~~~~------~l~~~~~~~Gv~li~~~~~--------  145 (256)
T TIGR00688        80 IGFNWWLFIWAVNNGSSLEVSLGYLINPLVMVALGRVFLKERISRFQ------FIAVIIATLGVISNIVLKG--------  145 (256)
T ss_pred             HHHHHHHHHHHHHcchHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHH------HHHHHHHHHHHHHHHHHcC--------
Confidence            78899999999999999999999999999999999999999998765      9999999999987652100        


Q ss_pred             CCCCCccccCCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHH---HcCCCCCcc
Q 020034          166 HSGSPRRLLLSPQLSWILGGFFLAAEAFMNSAWFILQALILRKFAAVLIIMFYLFFFNTILSTAFALI---VVSEPSDWK  242 (332)
Q Consensus       166 ~~~~~~~~~~~~~~~~~~G~~l~L~aa~~~A~~~v~~~~~~~~~~~~~~i~~~~~l~g~i~~~~~~~~---~~~~~~~~~  242 (332)
                                    +.   ..+.++++++||.|.+..|+..++ + .....     .+.....+....   ...+.....
T Consensus       146 --------------~~---~~~~l~aa~~~a~~~i~~~~~~~~-~-~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~  201 (256)
T TIGR00688       146 --------------SL---PWEALVLAFSFTAYGLIRKALKNT-D-LAGFC-----LETLSLMPVAIYYLLQTDFATVQQ  201 (256)
T ss_pred             --------------Cc---hHHHHHHHHHHHHHHHHHhhcCCC-C-cchHH-----HHHHHHHHHHHHHHHHhccCcccc
Confidence                          01   135688999999999998876432 2 22211     112222222211   111111001


Q ss_pred             ccchhhhHHHHhhh--hhhHHHHHHHHhhcc-h--hhhhcchHHHHHHHHHHHH
Q 020034          243 LGLDIGLVAVLYSV--SSYWHWVSSWLVHMV-P--VENWTSLCINVQALGHCLL  291 (332)
Q Consensus       243 ~~~~~~~~~ll~~g--t~v~~~l~~~a~~~~-~--~s~~~~l~pv~~~i~~~l~  291 (332)
                      ..+..+|..+++.|  +.++|.++++++++. +  ++++.|++|++++++|+++
T Consensus       202 ~~~~~~~~~l~~~g~~t~i~~~l~~~a~~~~~a~~~s~~~yl~Pv~~~~~~~~~  255 (256)
T TIGR00688       202 TNPFPIWLLLVLAGLITGTPLLAFVIAANRLPLNLLGLLQYIGPTIMMLCVSFL  255 (256)
T ss_pred             cCchhHHHHHHHHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHHHHh
Confidence            11112455556666  889999999999999 5  9999999999999999875

This uncharacterized protein is predicted to have many membrane-spanning domains.

>TIGR00817 tpt Tpt phosphate/phosphoenolpyruvate translocator

Probab=99.92  E-value=3.4e-23  Score=194.00  Aligned_cols=252  Identities=13%  Similarity=0.112  Sum_probs=189.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Q 020034           17 MVIVLLAQVSNMEVIKAAMSKGINKYVIIVYSDALSSLFFLFCSFLFHRSERPQLTFSILCSFFLLSVFGCSSQIFSFVG   96 (332)
Q Consensus        17 ll~~~~~wg~~~~~~K~~l~~~~~p~~~~~~R~~~a~i~ll~~~~~~~r~~~~~~~~~~~~~l~~~g~~g~~~~~l~~~g   96 (332)
                      +++-.++-.+..+.-|.++++--+|..+++.|+.++.+.+.+. +..+.+++++.+++++..++..|++++.++.+.+.+
T Consensus         7 ~~~w~~~~~~~~~~NK~~l~~~~~P~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~   85 (302)
T TIGR00817         7 FGLWYFLNVYFNIYNKKLLNVFPYPYFKTLISLAVGSLYCLLS-WSSGLPKRLKISSALLKLLLPVAIVHTIGHVTSNVS   85 (302)
T ss_pred             HHHHHHHHHHHHHHHHHHHhhCChhHHHHHHHHHHHHHHHHHH-HHhCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3333444445556789998754679999999999998776654 211222334567889999999999998888999999


Q ss_pred             hhccChhhHhHhhcchhHHHHHHHHHHHhhcccccccccccchhhhhhhhhchhheeeccCCCCcCCCCCCCCCccccCC
Q 020034           97 IQYSSPTLSTAMLNLIPAFTFVLAIIFRLEKLNWENKSSQAKSLGTFASIGGAFVVTFYKGPPLIGELSHSGSPRRLLLS  176 (332)
Q Consensus        97 l~~~sa~~A~~i~~~~P~~~~lls~l~~~Ek~~~~~~~s~~~~~gi~l~l~Gv~ll~~~~g~~~~~~~~~~~~~~~~~~~  176 (332)
                      ++|+|++.++++.++.|+++++++++++|||++++      +++|++++++|+.+..   +++                 
T Consensus        86 l~~~s~s~~~li~~~~Pv~~~ll~~~~~~e~~~~~------~~~~l~l~~~Gv~l~~---~~~-----------------  139 (302)
T TIGR00817        86 LSKVAVSFTHTIKAMEPFFSVVLSAFFLGQEFPST------LWLSLLPIVGGVALAS---DTE-----------------  139 (302)
T ss_pred             HHhccHHHHHHHHhcchHHHHHHHHHHhCCCCcHH------HHHHHHHHHHHHhhhc---CCc-----------------
Confidence            99999999999999999999999999999999865      4999999999997643   110                 


Q ss_pred             CCCcchhHHHHHHHHHHHHHHHHHHHHHHHH--hcchHHHHHHHHHHHHHHHHHHHHHHHcCCC-C--Ccc-----ccch
Q 020034          177 PQLSWILGGFFLAAEAFMNSAWFILQALILR--KFAAVLIIMFYLFFFNTILSTAFALIVVSEP-S--DWK-----LGLD  246 (332)
Q Consensus       177 ~~~~~~~G~~l~L~aa~~~A~~~v~~~~~~~--~~~~~~~i~~~~~l~g~i~~~~~~~~~~~~~-~--~~~-----~~~~  246 (332)
                      .+. ...|+++.++|+++||+|.+..||..+  ++ ++..++.+++..+++.+.|.....+... .  ++.     ....
T Consensus       140 ~~~-~~~G~~~~l~a~~~~a~~~v~~k~~~~~~~~-~~~~~~~~~~~~~~~~l~p~~~~~~~~~~~~~~~~~~~~~~~~~  217 (302)
T TIGR00817       140 LSF-NWAGFLSAMISNITFVSRNIFSKKAMTIKSL-DKTNLYAYISIMSLFLLSPPAFITEGPPFLPHGFMQAISGVNVT  217 (302)
T ss_pred             ccc-cHHHHHHHHHHHHHHHHHHHHHHHhhccCCC-CcccHHHHHHHHHHHHHHHHHHHHcchHHHHHHHHHhhcccCch
Confidence            111 246999999999999999999999877  66 5889999999999999999887655311 0  110     0000


Q ss_pred             hhhHHHHhhhhhhHHH----HHHHHhhcc-h--hhhhcchHHHHHHHHHHHHhCCCccc
Q 020034          247 IGLVAVLYSVSSYWHW----VSSWLVHMV-P--VENWTSLCINVQALGHCLLYCHGCRH  298 (332)
Q Consensus       247 ~~~~~ll~~gt~v~~~----l~~~a~~~~-~--~s~~~~l~pv~~~i~~~l~lgE~~~~  298 (332)
                      ..+...++. +..++.    ++++++++. |  ++++.+++|++++++|++++||+++.
T Consensus       218 ~~~~~~~~~-~~~~~~~~~~~~~~~l~~~sa~t~sv~~~l~pv~~~~~~~~~lge~lt~  275 (302)
T TIGR00817       218 KIYTVSLVA-AMGFFHFYQQVAFMLLGRVSPLTHSVGNCMKRVVVIVVSILFFGTKISP  275 (302)
T ss_pred             HHHHHHHHH-HHHHHHHHHHHHHHHHccCCchHHHHHhhhhhhheeeeehhhcCCCCch
Confidence            111112222 222343    445789999 7  99999999999999999999999974

specificities overlap.

>TIGR03340 phn_DUF6 phosphonate utilization associated putative membrane protein

Probab=99.90  E-value=2.1e-22  Score=186.92  Aligned_cols=253  Identities=10%  Similarity=-0.047  Sum_probs=176.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHhh-cCCCCCCCHHHHHHHHHHHHHHHHHHHH
Q 020034           14 SVGMVIVLLAQVSNMEVIKAAMSKGINKYVIIVYSDALSSLFFLFCSFLFH-RSERPQLTFSILCSFFLLSVFGCSSQIF   92 (332)
Q Consensus        14 ~l~ll~~~~~wg~~~~~~K~~l~~~~~p~~~~~~R~~~a~i~ll~~~~~~~-r~~~~~~~~~~~~~l~~~g~~g~~~~~l   92 (332)
                      ....++++++|+...+..|...++ -++  ..++++..+.++++|+..... +..++..+++.+..+...++.+..++.+
T Consensus         3 ~~~~~~aa~~~a~~~~~~k~~~~~-~~~--~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   79 (281)
T TIGR03340         3 LTLVVFSALMHAGWNLMAKSHADK-EPD--FLWWALLAHSVLLTPYGLWYLAQVGWSRLPATFWLLLAISAVANMVYFLG   79 (281)
T ss_pred             HHHHHHHHHHHHHHHHHHhhcCCc-hhH--HHHHHHHHHHHHHHHHHHHhcccCCCCCcchhhHHHHHHHHHHHHHHHHH
Confidence            456788999999999999965443 344  357788888888888765421 2222333344444444444444889999


Q ss_pred             HHHHhhccChhhHhHhhcchhHHHHHHHHHHHhhcccccccccccchhhhhhhhhchhheeeccCCCCcCCCCCCCCCcc
Q 020034           93 SFVGIQYSSPTLSTAMLNLIPAFTFVLAIIFRLEKLNWENKSSQAKSLGTFASIGGAFVVTFYKGPPLIGELSHSGSPRR  172 (332)
Q Consensus        93 ~~~gl~~~sa~~A~~i~~~~P~~~~lls~l~~~Ek~~~~~~~s~~~~~gi~l~l~Gv~ll~~~~g~~~~~~~~~~~~~~~  172 (332)
                      ++.|+++++++.++.+.++.|+++++++++++|||+++++      ++|+.+++.|+.++.. ++  .            
T Consensus        80 ~~~a~~~~~~~~~~~l~~~~p~~~~l~~~~~~~e~~~~~~------~~g~~~~~~Gv~ll~~-~~--~------------  138 (281)
T TIGR03340        80 LAQAYHHADVGLVYPLARSSPLLVAIWATLTLGETLSPLA------WLGILIITLGLLVLGL-SR--F------------  138 (281)
T ss_pred             HHHHHhcCChhhhhhHHhhhHHHHHHHHHHHHcCCCCHHH------HHHHHHHHHHHHHHhc-cc--c------------
Confidence            9999999999999999999999999999999999998764      9999999999988752 11  0            


Q ss_pred             ccCCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHhcch---HHHHHHHHHHHHHHHHHHHHHHHcCCCCCccccchhhh
Q 020034          173 LLLSPQLSWILGGFFLAAEAFMNSAWFILQALILRKFAA---VLIIMFYLFFFNTILSTAFALIVVSEPSDWKLGLDIGL  249 (332)
Q Consensus       173 ~~~~~~~~~~~G~~l~L~aa~~~A~~~v~~~~~~~~~~~---~~~i~~~~~l~g~i~~~~~~~~~~~~~~~~~~~~~~~~  249 (332)
                          .. ....|+.+.++++++|++|.+..|+..++.++   ....+.+++..+++...+.....+...  +.. ....+
T Consensus       139 ----~~-~~~~g~~~~l~aal~~a~~~i~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~-~~~~~  210 (281)
T TIGR03340       139 ----AQ-HRRKAYAWALAAALGTAIYSLSDKAAALGVPAFYSALGYLGIGFLAMGWPFLLLYLKRHGRS--MFP-YARQI  210 (281)
T ss_pred             ----cc-cchhHHHHHHHHHHHHHHhhhhccccccchhcccccHHHHHHHHHHHHHHHHHHHHHHhccc--hhh-hHHHH
Confidence                01 12357888999999999999988875444321   112233333333222222221112111  111 11223


Q ss_pred             HHHHhhh---hhhHHHHHHHHhhcc-h--hhhhcchHHHHHHHHHHHHhCCCccc
Q 020034          250 VAVLYSV---SSYWHWVSSWLVHMV-P--VENWTSLCINVQALGHCLLYCHGCRH  298 (332)
Q Consensus       250 ~~ll~~g---t~v~~~l~~~a~~~~-~--~s~~~~l~pv~~~i~~~l~lgE~~~~  298 (332)
                      ..+++.+   +.++|.+|++++++. +  ++.+.+++|++++++|++++||+++.
T Consensus       211 ~~~~~~~~~~s~l~~~l~~~al~~~~a~~~~~~~~l~pv~a~l~g~~~lgE~~~~  265 (281)
T TIGR03340       211 LPSATLGGLMIGGAYALVLWAMTRLPVATVVALRNTSIVFAVVLGIWFLNERWYL  265 (281)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhCCceEEEeecccHHHHHHHHHHHHhCCCccH
Confidence            3444444   889999999999999 5  99999999999999999999999974

This family of hydrophobic proteins has some homology to families of integral membrane proteins such as (pfam00892) and may be a permease. It occurs in the vicinity of various types of operons for the catabolism of phosphonates in Vibrio, Pseudomonas, Polaromonas and Thiomicrospira.

>PTZ00343 triose or hexose phosphate/phosphate translocator; Provisional

Probab=99.90  E-value=1.6e-21  Score=186.33  Aligned_cols=260  Identities=13%  Similarity=0.124  Sum_probs=193.2

Q ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHHHhcCCC-hHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCC--HHHHHHHHHHHHHH
Q 020034           10 AALPSVGMVIVLLAQVSNMEVIKAAMSKGIN-KYVIIVYSDALSSLFFLFCSFLFHRSERPQLT--FSILCSFFLLSVFG   86 (332)
Q Consensus        10 ~~~~~l~ll~~~~~wg~~~~~~K~~l~~~~~-p~~~~~~R~~~a~i~ll~~~~~~~r~~~~~~~--~~~~~~l~~~g~~g   86 (332)
                      ++|.....+.--.+-.......|.+++. +| |..++.+|++++.++..... ..+.+.+|+.+  ++++..++..|+++
T Consensus        47 ~~~~~~~~~~wy~~s~~~~~~nK~vl~~-~~~P~~l~~~~~~~~~l~~~~~~-~~~~~~~~~~~~~~~~~~~llp~gl~~  124 (350)
T PTZ00343         47 KWKLALLFLTWYALNVLYVVDNKLALNM-LPLPWTISSLQLFVGWLFALLYW-ATGFRKIPRIKSLKLFLKNFLPQGLCH  124 (350)
T ss_pred             cHHHHHHHHHHHHHHHHHHHHHHHHHHh-CChhHHHHHHHHHHHHHHHHHHH-HhCCCCCCCCCCHHHHHHHHHHHHHHH
Confidence            4444455555545546667779999875 99 99999999999988765442 22222233332  45778888999999


Q ss_pred             HHHHHHHHHHhhccChhhHhHhhcchhHHHHHHHHHHHhhcccccccccccchhhhhhhhhchhheeeccCCCCcCCCCC
Q 020034           87 CSSQIFSFVGIQYSSPTLSTAMLNLIPAFTFVLAIIFRLEKLNWENKSSQAKSLGTFASIGGAFVVTFYKGPPLIGELSH  166 (332)
Q Consensus        87 ~~~~~l~~~gl~~~sa~~A~~i~~~~P~~~~lls~l~~~Ek~~~~~~~s~~~~~gi~l~l~Gv~ll~~~~g~~~~~~~~~  166 (332)
                      ...+...+.++++++++.++++.++.|+++++++++++|||++++      ++++++++++|+.+.+.  + +       
T Consensus       125 ~~~~~~~~~sl~~~svs~~~iika~~Pvft~lls~~~l~ek~s~~------~~l~l~l~v~Gv~l~~~--~-~-------  188 (350)
T PTZ00343        125 LFVHFGAVISMGLGAVSFTHVVKAAEPVFTALLSILFLKQFLNLY------AYLSLIPIVGGVALASV--K-E-------  188 (350)
T ss_pred             HHHHHHHHHHHhhccHHHHHHHHHhhHHHHHHHHHHHhCCCccHH------HHHHHHHHHHHHHheec--c-c-------
Confidence            444555679999999999999999999999999999999999875      59999999999988762  1 1       


Q ss_pred             CCCCccccCCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHhcc------hHHHHHHHHHHHHHHHHHHHHHHHcCCC--
Q 020034          167 SGSPRRLLLSPQLSWILGGFFLAAEAFMNSAWFILQALILRKFA------AVLIIMFYLFFFNTILSTAFALIVVSEP--  238 (332)
Q Consensus       167 ~~~~~~~~~~~~~~~~~G~~l~L~aa~~~A~~~v~~~~~~~~~~------~~~~i~~~~~l~g~i~~~~~~~~~~~~~--  238 (332)
                                .+. ...|+++.++|+++||+|.++.|+..++.+      ++..+..+++..|+++++|+....|.+.  
T Consensus       189 ----------~~~-~~~G~~~~l~s~~~~a~~~i~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lp~~~~~e~~~~~  257 (350)
T PTZ00343        189 ----------LHF-TWLAFWCAMLSNLGSSLRSIFAKKTMKNKSEIGENLTASNIYMLLTLIASLISLPLVLFFEGKKWV  257 (350)
T ss_pred             ----------chh-HHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccCCHHHHHHHHHHHHHHHHHHHHHHHhhHHHH
Confidence                      111 246999999999999999999999876531      3555667778999999999887655321  


Q ss_pred             CCcc----ccchhhhHHHHhhh--hhhHHHHHHH----Hhhcc-h--hhhhcchHHHHHHHHHHHHhCCCccc
Q 020034          239 SDWK----LGLDIGLVAVLYSV--SSYWHWVSSW----LVHMV-P--VENWTSLCINVQALGHCLLYCHGCRH  298 (332)
Q Consensus       239 ~~~~----~~~~~~~~~ll~~g--t~v~~~l~~~----a~~~~-~--~s~~~~l~pv~~~i~~~l~lgE~~~~  298 (332)
                      ..+.    ......+..+++..  ++++|.+|+.    ++++. |  .++..+++|++++++|++++||+++.
T Consensus       258 ~~~~~~~~~~~~~~~~~~l~~i~~s~l~~~l~n~~~f~~l~~~s~~t~sv~~~lk~V~~iv~s~l~~ge~lt~  330 (350)
T PTZ00343        258 PVWTNYTANMTNYTKGIIIFKIFFSGVWYYLYNEVAFYCLGKVNQVTHAVANTLKRVVIIVSSIIIFQTQVTL  330 (350)
T ss_pred             HHHHHhhhcccccchHHHHHHHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHhhhhHHHhCCCCch
Confidence            1110    00011111222222  8899999995    99999 7  99999999999999999999999974

>COG0697 RhaT Permeases of the drug/metabolite transporter (DMT) superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / General function prediction only]

Probab=99.85  E-value=7.2e-19  Score=161.97  Aligned_cols=256  Identities=16%  Similarity=0.194  Sum_probs=183.9

Q ss_pred             chhhHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHHH-H
Q 020034            9 RAALPSVGMVIVLLAQVSNMEVIKAAMSKGINKYVIIVYSDALSSLFFLFCSFLFHRSERPQLTFSILCSFFLLSVFG-C   87 (332)
Q Consensus         9 ~~~~~~l~ll~~~~~wg~~~~~~K~~l~~~~~p~~~~~~R~~~a~i~ll~~~~~~~r~~~~~~~~~~~~~l~~~g~~g-~   87 (332)
                      +........++..+.|+.+....|...+...++....+.|+..+.+++.+.... ++..+.+. .+++....+.+.++ .
T Consensus         4 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~-~~~~~~~~~~~~~~~~   81 (292)
T COG0697           4 ALLLGLLALLLWGLLWGLSFIALKLAVESLDPFLFAAALRFLIAALLLLPLLLL-EPRGLRPA-LRPWLLLLLLALLGLA   81 (292)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHhcccCChHHHHHHHHHHHHHHHHHHHHh-hccccccc-ccchHHHHHHHHHHHH
Confidence            455677788888899999999999987643677777788999999885544322 11111111 12234455566666 8


Q ss_pred             HHHHHHHHHhhccChhhHhHhhcchhHHHHHHHH-HHHhhcccccccccccchhhhhhhhhchhheeeccCCCCcCCCCC
Q 020034           88 SSQIFSFVGIQYSSPTLSTAMLNLIPAFTFVLAI-IFRLEKLNWENKSSQAKSLGTFASIGGAFVVTFYKGPPLIGELSH  166 (332)
Q Consensus        88 ~~~~l~~~gl~~~sa~~A~~i~~~~P~~~~lls~-l~~~Ek~~~~~~~s~~~~~gi~l~l~Gv~ll~~~~g~~~~~~~~~  166 (332)
                      .++.+++.++++++++.++.+.++.|+++.++++ ++++||++++      ++.|+++++.|++++...++.        
T Consensus        82 ~~~~~~~~~~~~~~~~~~~~l~~~~p~~~~~~~~~~~~~e~~~~~------~~~~~~~~~~Gv~lv~~~~~~--------  147 (292)
T COG0697          82 LPFLLLFLALKYTSASVASLIIGLLPLFTALLAVLLLLGERLSLL------QILGILLALAGVLLILLGGGG--------  147 (292)
T ss_pred             HHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHccCCCcHH------HHHHHHHHHHhHHheecCCCc--------
Confidence            9999999999999999999999999999999997 6679999875      489999999999988621110        


Q ss_pred             CCCCccccCCCCCc-chhHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHH-HHHHHHHHHHHHHHHHHcCCCCCcccc
Q 020034          167 SGSPRRLLLSPQLS-WILGGFFLAAEAFMNSAWFILQALILRKFAAVLIIMF-YLFFFNTILSTAFALIVVSEPSDWKLG  244 (332)
Q Consensus       167 ~~~~~~~~~~~~~~-~~~G~~l~L~aa~~~A~~~v~~~~~~~~~~~~~~i~~-~~~l~g~i~~~~~~~~~~~~~~~~~~~  244 (332)
                                 +.+ ...|+.+.++++++||.|.+..|+.. +. ++..... +++........+. ...+.+   .+. 
T Consensus       148 -----------~~~~~~~g~~~~l~a~~~~a~~~~~~~~~~-~~-~~~~~~~~~~~~~~~~~~~~~-~~~~~~---~~~-  209 (292)
T COG0697         148 -----------GGILSLLGLLLALAAALLWALYTALVKRLS-RL-GPVTLALLLQLLLALLLLLLF-FLSGFG---API-  209 (292)
T ss_pred             -----------chhHHHHHHHHHHHHHHHHHHHHHHHHHhc-CC-ChHHHHHHHHHHHHHHHHHHH-Hhcccc---ccC-
Confidence                       011 35899999999999999999988876 44 3455554 4444122222121 111111   111 


Q ss_pred             chhhhHHHHhhh---hhhHHHHHHHHhhcc-h--hhhhcchHHHHHHHHHHHHhCCCccc
Q 020034          245 LDIGLVAVLYSV---SSYWHWVSSWLVHMV-P--VENWTSLCINVQALGHCLLYCHGCRH  298 (332)
Q Consensus       245 ~~~~~~~ll~~g---t~v~~~l~~~a~~~~-~--~s~~~~l~pv~~~i~~~l~lgE~~~~  298 (332)
                      ....+..+.+.|   ++++|.++++++++. +  ++.+.+++|+++++++++++||.++.
T Consensus       210 ~~~~~~~~~~~g~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~l~~~e~~~~  269 (292)
T COG0697         210 LSRAWLLLLYLGVFSTGLAYLLWYYALRLLGASLVALLSLLEPVFAALLGVLLLGEPLSP  269 (292)
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHhCCCCcH
Confidence            112344555555   668999999999999 5  88888999999999999999999974

>PF06027 DUF914: Eukaryotic protein of unknown function (DUF914); InterPro: IPR009262 This family consists of several hypothetical proteins of unknown function

Probab=99.78  E-value=1.4e-16  Score=150.05  Aligned_cols=269  Identities=14%  Similarity=0.105  Sum_probs=177.9

Q ss_pred             hhHHHHHHHHH---HHHHHHHHHHHHHHhcCCC-hHHHHHHHHHHHHHHHHHHHHHhhcC-CCCCCCHHHHHHHHHHHHH
Q 020034           11 ALPSVGMVIVL---LAQVSNMEVIKAAMSKGIN-KYVIIVYSDALSSLFFLFCSFLFHRS-ERPQLTFSILCSFFLLSVF   85 (332)
Q Consensus        11 ~~~~l~ll~~~---~~wg~~~~~~K~~l~~~~~-p~~~~~~R~~~a~i~ll~~~~~~~r~-~~~~~~~~~~~~l~~~g~~   85 (332)
                      ++-+..+++.+   ++-.+....++..-+.+.+ |..-.+.-+..-.++..+....++++ ...+.-+++|++.++.|++
T Consensus         9 ~~~~~~~~lgQ~lsl~~~~t~~~s~~l~~~~~~~P~~Qs~~~Y~~l~~vy~~~~~~r~~~~~~~~~~~~~~w~y~lla~~   88 (334)
T PF06027_consen    9 RRFWIVLLLGQVLSLCITGTGTFSSLLANKGVNIPTFQSFFNYVLLALVYTPILLYRRGFKKWLKVLKRPWWKYFLLALL   88 (334)
T ss_pred             HHHHHHHHHHHHHHHHHHhHHHHHHHHHhcCccCcHHHHHHHHHHHHHHHhhhhhhccccccchhhcchhHHHHHHHHHH
Confidence            33444444333   3345555555554333433 44444555555444444543332111 1112223556677788988


Q ss_pred             HHHHHHHHHHHhhccChhhHhHhhcchhHHHHHHHHHHHhhcccccccccccchhhhhhhhhchhheeeccCCCCcCCCC
Q 020034           86 GCSSQIFSFVGIQYSSPTLSTAMLNLIPAFTFVLAIIFRLEKLNWENKSSQAKSLGTFASIGGAFVVTFYKGPPLIGELS  165 (332)
Q Consensus        86 g~~~~~l~~~gl~~~sa~~A~~i~~~~P~~~~lls~l~~~Ek~~~~~~~s~~~~~gi~l~l~Gv~ll~~~~g~~~~~~~~  165 (332)
                      -...+++...|++||+.+.+.++..+.-++++++|++++|||.++.      |++|+++|++|++++...+....+    
T Consensus        89 Dv~aN~~~v~a~~yTsvtS~~lL~~~~i~~~~~LS~~fL~~ry~~~------~~~gv~i~i~Gv~lv~~sD~~~~~----  158 (334)
T PF06027_consen   89 DVEANYLVVLAYQYTSVTSVQLLDCTSIPFVMILSFIFLKRRYSWF------HILGVLICIAGVVLVVVSDVLSGS----  158 (334)
T ss_pred             HHHHHHHHHHHhhcccHhHHHhhhhhhhHHHHHHHHHHHHhhhhHH------HHHHHHHHHhhhhheeeecccccc----
Confidence            8888899999999999999999999999999999999999998875      599999999999888754321100    


Q ss_pred             CCCCCccccCCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHcCC-CCCcccc
Q 020034          166 HSGSPRRLLLSPQLSWILGGFFLAAEAFMNSAWFILQALILRKFAAVLIIMFYLFFFNTILSTAFALIVVSE-PSDWKLG  244 (332)
Q Consensus       166 ~~~~~~~~~~~~~~~~~~G~~l~L~aa~~~A~~~v~~~~~~~~~~~~~~i~~~~~l~g~i~~~~~~~~~~~~-~~~~~~~  244 (332)
                              +...+.+...||++.+++++.||++++++++..++.+ .....++..++|.+++.+...+.|.. ....++.
T Consensus       159 --------~~~~~~~~i~GDll~l~~a~lya~~nV~~E~~v~~~~-~~~~lg~~Glfg~ii~~iq~~ile~~~i~~~~w~  229 (334)
T PF06027_consen  159 --------DSSSGSNPILGDLLALLGAILYAVSNVLEEKLVKKAP-RVEFLGMLGLFGFIISGIQLAILERSGIESIHWT  229 (334)
T ss_pred             --------cCCCCCccchhHHHHHHHHHHHHHHHHHHHHhcccCC-HHHHHHHHHHHHHHHHHHHHHheehhhhhccCCC
Confidence                    1123445689999999999999999999999998875 67788899999999998877766643 2222322


Q ss_pred             chhhhHHHHhhh-hhhHHHHHHHHhhcc-h--hhhhcchHHHHHHHHHHHHhCCCccc
Q 020034          245 LDIGLVAVLYSV-SSYWHWVSSWLVHMV-P--VENWTSLCINVQALGHCLLYCHGCRH  298 (332)
Q Consensus       245 ~~~~~~~ll~~g-t~v~~~l~~~a~~~~-~--~s~~~~l~pv~~~i~~~l~lgE~~~~  298 (332)
                      .......+.|.. ..+-|.+....++.- |  ...-.....+++++++++++||.++.
T Consensus       230 ~~~~~~~v~~~~~lf~~y~l~p~~l~~ssAt~~nLsLLTsd~~ali~~i~~f~~~~~~  287 (334)
T PF06027_consen  230 SQVIGLLVGYALCLFLFYSLVPIVLRMSSATFFNLSLLTSDFYALIIDIFFFGYKFSW  287 (334)
T ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHHHhCccceeehHHHHhhHHHHHHHHHhcCccccH
Confidence            221111112221 233334444555555 5  22222336889999999999999975

Some of the sequences in this family are annotated as putative membrane proteins.

>COG2962 RarD Predicted permeases [General function prediction only]

Probab=99.75  E-value=3.3e-16  Score=141.55  Aligned_cols=254  Identities=11%  Similarity=0.043  Sum_probs=187.4

Q ss_pred             chhhHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHhhcCCC--C-CCCHHHHHHHHHHHHH
Q 020034            9 RAALPSVGMVIVLLAQVSNMEVIKAAMSKGINKYVIIVYSDALSSLFFLFCSFLFHRSER--P-QLTFSILCSFFLLSVF   85 (332)
Q Consensus         9 ~~~~~~l~ll~~~~~wg~~~~~~K~~l~~~~~p~~~~~~R~~~a~i~ll~~~~~~~r~~~--~-~~~~~~~~~l~~~g~~   85 (332)
                      ...|+++..+.+.++||..+...|.. + +.|+.++.+.|..-+..+++.+....++++.  . ..+++.+..+.+.+..
T Consensus         4 ~~~~Gil~~l~Ay~lwG~lp~y~kll-~-~~~~~eIlahRviwS~~~~l~ll~~~r~~~~~~~~~~~p~~~~~~~l~a~l   81 (293)
T COG2962           4 DSRKGILLALLAYLLWGLLPLYFKLL-E-PLPATEILAHRVIWSFPFMLALLFLLRQWRELKQLLKQPKTLLMLALTALL   81 (293)
T ss_pred             cccchhHHHHHHHHHHHHHHHHHHHH-c-cCCHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhCcHHHHHHHHHHHH
Confidence            34689999999999999999999974 5 5999999999999998888876555433221  1 2345566666667766


Q ss_pred             HHHHHHHHHHHhhccChhhHhHhhcchhHHHHHHHHHHHhhcccccccccccchhhhhhhhhchhheeeccCCCCcCCCC
Q 020034           86 GCSSQIFSFVGIQYSSPTLSTAMLNLIPAFTFVLAIIFRLEKLNWENKSSQAKSLGTFASIGGAFVVTFYKGPPLIGELS  165 (332)
Q Consensus        86 g~~~~~l~~~gl~~~sa~~A~~i~~~~P~~~~lls~l~~~Ek~~~~~~~s~~~~~gi~l~l~Gv~ll~~~~g~~~~~~~~  165 (332)
                      -..+...|.++.+.-..-+|++=++..|++.++++++|+|||+++      .|+++++++.+|+.......|        
T Consensus        82 i~~nW~lfiWAvn~g~~leaSLGY~InPL~~VllG~lflkErls~------~Q~iAV~lA~~GV~~~~~~~g--------  147 (293)
T COG2962          82 IGLNWWLFIWAVNNGHVLEASLGYFINPLVNVLLGRLFLKERLSR------LQWIAVGLAAAGVLIQTWLLG--------  147 (293)
T ss_pred             HHHHHHHhheecCCCchhHHHhHHHHHHHHHHHHHHHHHHhhccH------HHHHHHHHHHHHHHHHHHHcC--------
Confidence            689999999999999999999999999999999999999999875      569999999999987664322        


Q ss_pred             CCCCCccccCCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHcCCCCCccccc
Q 020034          166 HSGSPRRLLLSPQLSWILGGFFLAAEAFMNSAWFILQALILRKFAAVLIIMFYLFFFNTILSTAFALIVVSEPSDWKLGL  245 (332)
Q Consensus       166 ~~~~~~~~~~~~~~~~~~G~~l~L~aa~~~A~~~v~~~~~~~~~~~~~~i~~~~~l~g~i~~~~~~~~~~~~~~~~~~~~  245 (332)
                                  +.+|     ..+.=+++|+.|..+.|+ .+ .+ ..+-....++.-....+...+..+.+........
T Consensus       148 ------------~lpw-----val~la~sf~~Ygl~RK~-~~-v~-a~~g~~lE~l~l~p~al~yl~~l~~~~~~~~~~~  207 (293)
T COG2962         148 ------------SLPW-----VALALALSFGLYGLLRKK-LK-VD-ALTGLTLETLLLLPVALIYLLFLADSGQFLQQNA  207 (293)
T ss_pred             ------------CCcH-----HHHHHHHHHHHHHHHHHh-cC-Cc-hHHhHHHHHHHHhHHHHHHHHHHhcCchhhhcCC
Confidence                        1233     235558899999977443 33 32 3444444554444444444444332221011011


Q ss_pred             hhhhHHHHhhh--hhhHHHHHHHHhhcch---hhhhcchHHHHHHHHHHHHhCCCccc
Q 020034          246 DIGLVAVLYSV--SSYWHWVSSWLVHMVP---VENWTSLCINVQALGHCLLYCHGCRH  298 (332)
Q Consensus       246 ~~~~~~ll~~g--t~v~~~l~~~a~~~~~---~s~~~~l~pv~~~i~~~l~lgE~~~~  298 (332)
                      ...+..++.+|  |.++..+|..+.+++|   .+.++|++|..--++|++++||+++.
T Consensus       208 ~~~~~LLv~aG~vTavpL~lf~~aa~~lpls~~G~lqYi~Ptl~fllav~i~~E~~~~  265 (293)
T COG2962         208 NSLWLLLVLAGLVTAVPLLLFAAAAKRLPLSTLGFLQYIEPTLMFLLAVLIFGEPFDS  265 (293)
T ss_pred             chHHHHHHHhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHcCCCCCH
Confidence            12244455566  9999999999999995   99999999999999999999999975

>TIGR00776 RhaT RhaT L-rhamnose-proton symporter family protein

Probab=99.74  E-value=4.9e-16  Score=144.90  Aligned_cols=255  Identities=13%  Similarity=0.056  Sum_probs=178.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHHHHHHHHH
Q 020034           13 PSVGMVIVLLAQVSNMEVIKAAMSKGINKYVIIVYSDALSSLFFLFCSFLFHRSERPQLTFSILCSFFLLSVFGCSSQIF   92 (332)
Q Consensus        13 ~~l~ll~~~~~wg~~~~~~K~~l~~~~~p~~~~~~R~~~a~i~ll~~~~~~~r~~~~~~~~~~~~~l~~~g~~g~~~~~l   92 (332)
                      +++..++++++||++.+..|...  +.++.++.  |..++.+++..+....+ +.+ +..++.+..-++.|+.-...+.+
T Consensus         2 ~~l~~lia~~~wGs~g~~~k~~~--g~~~~~~~--~~~~g~l~~~~~~~~~~-~~~-~~~~~~~~~g~l~G~~w~ig~~~   75 (290)
T TIGR00776         2 DILIALIPALFWGSFVLINVKIG--GGPYSQTL--GTTFGALILSIAIAIFV-LPE-FWALSIFLVGLLSGAFWALGQIN   75 (290)
T ss_pred             chHHHHHHHHHHhhhHHHHhccC--CCHHHHHH--HHHHHHHHHHHHHHHHh-CCc-ccccHHHHHHHHHHHHHHhhhhh
Confidence            36788899999999999999853  58888876  88888887776655432 211 11133333334444444677799


Q ss_pred             HHHHhhccChhhHhHhhc-chhHHHHHHHHHHHhhcccccccccccchhhhhhhhhchhheeeccCCCCcCCCCCCCCCc
Q 020034           93 SFVGIQYSSPTLSTAMLN-LIPAFTFVLAIIFRLEKLNWENKSSQAKSLGTFASIGGAFVVTFYKGPPLIGELSHSGSPR  171 (332)
Q Consensus        93 ~~~gl~~~sa~~A~~i~~-~~P~~~~lls~l~~~Ek~~~~~~~s~~~~~gi~l~l~Gv~ll~~~~g~~~~~~~~~~~~~~  171 (332)
                      ++.++++++.+.|-.+.+ +.|++..+.+.+++|||.+++++  ...++|+++.++|++++...++++.           
T Consensus        76 ~~~ai~~~gva~a~~i~~~~~~v~~~l~~~~~f~e~~t~~~~--~~~~~g~~l~l~G~~l~~~~~~~~~-----------  142 (290)
T TIGR00776        76 QFKSMRYMGVSKTMPISTGFQLVGGTLFGVIVFGEWSTSIQT--LLGLLALILIIIGVYLTSRSKDKSA-----------  142 (290)
T ss_pred             HHHHHHHHhHHHHhHHHHHHHHHHHHHHHHHHhhhccchHHH--HHHHHHHHHHHHhHheEEecccccc-----------
Confidence            999999999999988888 88899999999999999865531  1238999999999988763322110           


Q ss_pred             cccCCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHH---HHHHHHHHHHHHHHcCCCCCccccchhh
Q 020034          172 RLLLSPQLSWILGGFFLAAEAFMNSAWFILQALILRKFAAVLIIMFYLF---FFNTILSTAFALIVVSEPSDWKLGLDIG  248 (332)
Q Consensus       172 ~~~~~~~~~~~~G~~l~L~aa~~~A~~~v~~~~~~~~~~~~~~i~~~~~---l~g~i~~~~~~~~~~~~~~~~~~~~~~~  248 (332)
                        ..+...+...|.++.++|+++|+.|.+..|+.  ++ +|...++.+.   +.++.+..+..  ...  .++.  ....
T Consensus       143 --~~~~~~~~~~Gi~~~l~sg~~y~~~~~~~~~~--~~-~~~~~~~~~~~g~~~~~~~~~~~~--~~~--~~~~--~~~~  211 (290)
T TIGR00776       143 --GIKSEFNFKKGILLLLMSTIGYLVYVVVAKAF--GV-DGLSVLLPQAIGMVIGGIIFNLGH--ILA--KPLK--KYAI  211 (290)
T ss_pred             --ccccccchhhHHHHHHHHHHHHHHHHHHHHHc--CC-CcceehhHHHHHHHHHHHHHHHHH--hcc--cchH--HHHH
Confidence              00000223579999999999999999998865  35 4777744444   44444443322  111  1111  1122


Q ss_pred             hHHHHhhh--hhhHHHHHHHHhh-cc-h--hhhhcchHHHHHHHHHHHHhCCCccc
Q 020034          249 LVAVLYSV--SSYWHWVSSWLVH-MV-P--VENWTSLCINVQALGHCLLYCHGCRH  298 (332)
Q Consensus       249 ~~~ll~~g--t~v~~~l~~~a~~-~~-~--~s~~~~l~pv~~~i~~~l~lgE~~~~  298 (332)
                      +..++ .|  +++++.+|..+.+ +. +  ++.++.++|+.++++++++++|..+.
T Consensus       212 ~~~~~-~Gi~~~ia~~~y~~~~~~~~~~~~~~~ls~~~pvia~~~~v~~l~E~~~~  266 (290)
T TIGR00776       212 LLNIL-PGLMWGIGNFFYLFSAQPKVGVATSFSLSQLGVIISTLGGILILGEKKTK  266 (290)
T ss_pred             HHHHH-HHHHHHHHHHHHHHHcccccchhhHHHHHHHHHHHHHHHHHHHhccCCCc
Confidence            22333 45  8899999999999 67 5  99999999999999999999999864

These proteins are members of the L-Rhamnose Symporter (RhaT) Family (TC 2.A.7). This family includes two characterized members, both of which function as L-rhamnose:H+ symporters and have 10 GES predicted transmembrane domains.

>COG5006 rhtA Threonine/homoserine efflux transporter [Amino acid transport and metabolism]

Probab=99.73  E-value=1.2e-15  Score=134.86  Aligned_cols=248  Identities=11%  Similarity=0.024  Sum_probs=186.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHHHHHHHHH
Q 020034           13 PSVGMVIVLLAQVSNMEVIKAAMSKGINKYVIIVYSDALSSLFFLFCSFLFHRSERPQLTFSILCSFFLLSVFGCSSQIF   92 (332)
Q Consensus        13 ~~l~ll~~~~~wg~~~~~~K~~l~~~~~p~~~~~~R~~~a~i~ll~~~~~~~r~~~~~~~~~~~~~l~~~g~~g~~~~~l   92 (332)
                      ++++++.+++.-=+...+.|..... +.|...+.+|..+++++++++.    |..+.+.+++++..+...|..-...+.+
T Consensus        13 p~~~ll~amvsiq~Gas~Ak~LFP~-vG~~g~t~lRl~~aaLIll~l~----RPwr~r~~~~~~~~~~~yGvsLg~MNl~   87 (292)
T COG5006          13 PILALLVAMVSIQSGASFAKSLFPL-VGAAGVTALRLAIAALILLALF----RPWRRRLSKPQRLALLAYGVSLGGMNLL   87 (292)
T ss_pred             cHHHHHHHHHHHHhhHHHHHHHccc-cChhhHHHHHHHHHHHHHHHHh----hHHHhccChhhhHHHHHHHHHHHHHHHH
Confidence            6777777666555556678877765 9999999999999999998773    2223456778888899999888788899


Q ss_pred             HHHHhhccChhhHhHhhcchhHHHHHHHHHHHhhcccccccccccchhhhhhhhhchhheeeccCCCCcCCCCCCCCCcc
Q 020034           93 SFVGIQYSSPTLSTAMLNLIPAFTFVLAIIFRLEKLNWENKSSQAKSLGTFASIGGAFVVTFYKGPPLIGELSHSGSPRR  172 (332)
Q Consensus        93 ~~~gl~~~sa~~A~~i~~~~P~~~~lls~l~~~Ek~~~~~~~s~~~~~gi~l~l~Gv~ll~~~~g~~~~~~~~~~~~~~~  172 (332)
                      ||.+++..+-+.|..+-++-|+.+.+++.   |..         ...+-+.+++.|+.++.-. |..             
T Consensus        88 FY~si~riPlGiAVAiEF~GPL~vA~~~s---Rr~---------~d~vwvaLAvlGi~lL~p~-~~~-------------  141 (292)
T COG5006          88 FYLSIERIPLGIAVAIEFTGPLAVALLSS---RRL---------RDFVWVALAVLGIWLLLPL-GQS-------------  141 (292)
T ss_pred             HHHHHHhccchhhhhhhhccHHHHHHHhc---cch---------hhHHHHHHHHHHHHhheec-cCC-------------
Confidence            99999999999999999999998877653   111         2467788999999887622 211             


Q ss_pred             ccCCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHcCC-CCCccccchhhhHH
Q 020034          173 LLLSPQLSWILGGFFLAAEAFMNSAWFILQALILRKFAAVLIIMFYLFFFNTILSTAFALIVVSE-PSDWKLGLDIGLVA  251 (332)
Q Consensus       173 ~~~~~~~~~~~G~~l~L~aa~~~A~~~v~~~~~~~~~~~~~~i~~~~~l~g~i~~~~~~~~~~~~-~~~~~~~~~~~~~~  251 (332)
                         ....| ..|..+.+++..||++|++..+|.-+..+ ...-...-+.+++++.+|+......+ .-+++..  ..-..
T Consensus       142 ---~~~lD-p~Gv~~Al~AG~~Wa~YIv~G~r~g~~~~-g~~g~a~gm~vAaviv~Pig~~~ag~~l~~p~ll--~laLg  214 (292)
T COG5006         142 ---VWSLD-PVGVALALGAGACWALYIVLGQRAGRAEH-GTAGVAVGMLVAALIVLPIGAAQAGPALFSPSLL--PLALG  214 (292)
T ss_pred             ---cCcCC-HHHHHHHHHHhHHHHHHHHHcchhcccCC-CchHHHHHHHHHHHHHhhhhhhhcchhhcChHHH--HHHHH
Confidence               11123 58999999999999999999999865544 44456788899999999987644221 1111110  00111


Q ss_pred             HHhhhhhhHHHHHHHHhhcch---hhhhcchHHHHHHHHHHHHhCCCccc
Q 020034          252 VLYSVSSYWHWVSSWLVHMVP---VENWTSLCINVQALGHCLLYCHGCRH  298 (332)
Q Consensus       252 ll~~gt~v~~~l~~~a~~~~~---~s~~~~l~pv~~~i~~~l~lgE~~~~  298 (332)
                      +..+++.+.|.+=..++++.|   -++...+||.++++.|++++||.++.
T Consensus       215 vavlSSalPYsLEmiAL~rlp~~~F~~LlSLePa~aAl~G~i~L~e~ls~  264 (292)
T COG5006         215 VAVLSSALPYSLEMIALRRLPARTFGTLLSLEPALAALSGLIFLGETLTL  264 (292)
T ss_pred             HHHHhcccchHHHHHHHhhCChhHHHHHHHhhHHHHHHHHHHHhcCCCCH
Confidence            222239999999999999994   88999999999999999999999973

>KOG4510 consensus Permease of the drug/metabolite transporter (DMT) superfamily [General function prediction only]

Probab=99.64  E-value=8.9e-17  Score=142.83  Aligned_cols=265  Identities=12%  Similarity=0.063  Sum_probs=181.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHHHHHHHHH
Q 020034           13 PSVGMVIVLLAQVSNMEVIKAAMSKGINKYVIIVYSDALSSLFFLFCSFLFHRSERPQLTFSILCSFFLLSVFGCSSQIF   92 (332)
Q Consensus        13 ~~l~ll~~~~~wg~~~~~~K~~l~~~~~p~~~~~~R~~~a~i~ll~~~~~~~r~~~~~~~~~~~~~l~~~g~~g~~~~~l   92 (332)
                      +.+++.++ ..+.+..++.+..++  .+|.+....|+..--++-.|...+.......+...|  ..++++|+.|.....+
T Consensus        39 gl~l~~vs-~ff~~~~vv~t~~~e--~~p~e~a~~r~l~~mlit~pcliy~~~~v~gp~g~R--~~LiLRg~mG~tgvml  113 (346)
T KOG4510|consen   39 GLLLLTVS-YFFNSCMVVSTKVLE--NDPMELASFRLLVRMLITYPCLIYYMQPVIGPEGKR--KWLILRGFMGFTGVML  113 (346)
T ss_pred             CceehhhH-HHHhhHHHhhhhhhc--cChhHhhhhhhhhehhhhheEEEEEeeeeecCCCcE--EEEEeehhhhhhHHHH
Confidence            44445555 666666666666553  799999999966665555554333211111111222  2466799999777788


Q ss_pred             HHHHhhccChhhHhHhhcchhHHHHHHHHHHHhhcccccccccccchhhhhhhhhchhheee---ccCCCCcCCCCCCCC
Q 020034           93 SFVGIQYSSPTLSTAMLNLIPAFTFVLAIIFRLEKLNWENKSSQAKSLGTFASIGGAFVVTF---YKGPPLIGELSHSGS  169 (332)
Q Consensus        93 ~~~gl~~~sa~~A~~i~~~~P~~~~lls~l~~~Ek~~~~~~~s~~~~~gi~l~l~Gv~ll~~---~~g~~~~~~~~~~~~  169 (332)
                      .|++++|.|-+.|++|.+.+|+++.+++|.++|||.+.      ...+|..+.+.|+++++=   .-|++..     +  
T Consensus       114 myya~~~mslaDA~vItFssPvft~ifaw~~LkE~~t~------~eaL~s~itl~GVVLIvRPpFlFG~~t~-----g--  180 (346)
T KOG4510|consen  114 MYYALMYMSLADAVVITFSSPVFTIIFAWAFLKEPFTK------FEALGSLITLLGVVLIVRPPFLFGDTTE-----G--  180 (346)
T ss_pred             HHHHHhhcchhheEEEEecChHHHHHHHHHHHcCCCcH------HHHHHHHHhhheEEEEecCCcccCCCcc-----c--
Confidence            89999999999999999999999999999999999864      568999999999999871   0121110     0  


Q ss_pred             CccccCCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHcCCCCCcccc-chhh
Q 020034          170 PRRLLLSPQLSWILGGFFLAAEAFMNSAWFILQALILRKFAAVLIIMFYLFFFNTILSTAFALIVVSEPSDWKLG-LDIG  248 (332)
Q Consensus       170 ~~~~~~~~~~~~~~G~~l~L~aa~~~A~~~v~~~~~~~~~~~~~~i~~~~~l~g~i~~~~~~~~~~~~~~~~~~~-~~~~  248 (332)
                       +  +...-.....|..-.+.+++.-|.-.++.|++-|+.. ......+..+++.+..++.....+    .|.++ -..+
T Consensus       181 -~--~~s~~~~~~~gt~aai~s~lf~asvyIilR~iGk~~h-~~msvsyf~~i~lV~s~I~~~~ig----~~~lP~cgkd  252 (346)
T KOG4510|consen  181 -E--DSSQVEYDIPGTVAAISSVLFGASVYIILRYIGKNAH-AIMSVSYFSLITLVVSLIGCASIG----AVQLPHCGKD  252 (346)
T ss_pred             -c--ccccccccCCchHHHHHhHhhhhhHHHHHHHhhcccc-EEEEehHHHHHHHHHHHHHHhhcc----ceecCccccc
Confidence             0  0111122356777888888888877777777656653 344445666777777665433222    12221 1234


Q ss_pred             hHHHHhhh--hhhHHHHHHHHhhcc-h--hhhhcchHHHHHHHHHHHHhCCCccc---cceee
Q 020034          249 LVAVLYSV--SSYWHWVSSWLVHMV-P--VENWTSLCINVQALGHCLLYCHGCRH---CRRRF  303 (332)
Q Consensus       249 ~~~ll~~g--t~v~~~l~~~a~~~~-~--~s~~~~l~pv~~~i~~~l~lgE~~~~---~~~~~  303 (332)
                      ++.++.+|  +.+++.+.+.++++. +  ++...+.+-+++.++.++++||.++.   +|.+.
T Consensus       253 r~l~~~lGvfgfigQIllTm~lQiErAGpvaim~~~dvvfAf~wqv~ff~~~Pt~ws~~Ga~~  315 (346)
T KOG4510|consen  253 RWLFVNLGVFGFIGQILLTMGLQIERAGPVAIMTYTDVVFAFFWQVLFFGHWPTIWSWVGAVM  315 (346)
T ss_pred             eEEEEEehhhhhHHHHHHHHHhhhhccCCeehhhHHHHHHHHHHHHHHhcCCChHHHhhceee
Confidence            55556666  788899999999888 6  99999999999999999999999975   55553

>PF00892 EamA: EamA-like transporter family; InterPro: IPR000620 This domain is found in proteins including the Erwinia chrysanthemi PecM protein, which is involved in pectinase, cellulase and blue pigment regulation; and the Salmonella typhimurium PagO protein, the function of which is unknown

Probab=99.52  E-value=3.4e-14  Score=114.48  Aligned_cols=123  Identities=18%  Similarity=0.332  Sum_probs=106.6

Q ss_pred             HHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHHH-HHHHHHHHHHhhcc
Q 020034           22 LAQVSNMEVIKAAMSKGINKYVIIVYSDALSSLFFLFCSFLFHRSERPQLTFSILCSFFLLSVFG-CSSQIFSFVGIQYS  100 (332)
Q Consensus        22 ~~wg~~~~~~K~~l~~~~~p~~~~~~R~~~a~i~ll~~~~~~~r~~~~~~~~~~~~~l~~~g~~g-~~~~~l~~~gl~~~  100 (332)
                      ++||...++.|...++ .||....++|+..+++ ++++....+++..++.+++++......+.++ ..++.+++.+++++
T Consensus         1 ~~~a~~~~~~k~~~~~-~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~   78 (126)
T PF00892_consen    1 FSWAIYSVFSKKLLKK-ISPLSITFWRFLIAGI-LLILLLILGRKPFKNLSPRQWLWLLFLGLLGTALAYLLYFYALKYI   78 (126)
T ss_pred             ceeeeHHHHHHHHhcc-CCHHHHHHHHHHHHHH-HHHHHHhhccccccCCChhhhhhhhHhhccceehHHHHHHHHHHhc
Confidence            4689999999998875 9999999999999998 6666555544433455677788888888887 89999999999999


Q ss_pred             ChhhHhHhhcchhHHHHHHHHHHHhhcccccccccccchhhhhhhhhchhhe
Q 020034          101 SPTLSTAMLNLIPAFTFVLAIIFRLEKLNWENKSSQAKSLGTFASIGGAFVV  152 (332)
Q Consensus       101 sa~~A~~i~~~~P~~~~lls~l~~~Ek~~~~~~~s~~~~~gi~l~l~Gv~ll  152 (332)
                      +++.++.+.++.|+++.+++++++|||++++      +++|+++.++|++++
T Consensus        79 ~~~~~~~~~~~~pv~~~i~~~~~~~e~~~~~------~~~g~~l~~~g~~l~  124 (126)
T PF00892_consen   79 SASIVSILQYLSPVFAAILGWLFLGERPSWR------QIIGIILIIIGVVLI  124 (126)
T ss_pred             chhHHHHHHHHHHHHHHHHHHHHcCCCCCHH------HHHHHHHHHHHHHHH
Confidence            9999999999999999999999999999875      499999999999775

Many members of this family are classed as drug/metabolite transporters and have no known function. They are predicted to be integral membrane proteins and many of the proteins contain two copies of this domain [].; GO: 0016020 membrane

>COG2510 Predicted membrane protein [Function unknown]

Probab=99.50  E-value=2.6e-13  Score=108.21  Aligned_cols=134  Identities=13%  Similarity=0.152  Sum_probs=118.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHhhcCCCC-CCCHHHHHHHHHHHHHHHHHHH
Q 020034           13 PSVGMVIVLLAQVSNMEVIKAAMSKGINKYVIIVYSDALSSLFFLFCSFLFHRSERP-QLTFSILCSFFLLSVFGCSSQI   91 (332)
Q Consensus        13 ~~l~ll~~~~~wg~~~~~~K~~l~~~~~p~~~~~~R~~~a~i~ll~~~~~~~r~~~~-~~~~~~~~~l~~~g~~g~~~~~   91 (332)
                      ..++.+++++++|...++.|+.++ ++||..-+..|.....+++..+....++.+.+ ....|.|.++.+.|+.+.+...
T Consensus         4 ~~~~ALLsA~fa~L~~iF~KIGl~-~vdp~~At~IRtiVi~~~l~~v~~~~g~~~~~~~~~~k~~lflilSGla~glswl   82 (140)
T COG2510           4 AIIYALLSALFAGLTPIFAKIGLE-GVDPDFATTIRTIVILIFLLIVLLVTGNWQAGGEIGPKSWLFLILSGLAGGLSWL   82 (140)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhcc-ccCccHHHHHHHHHHHHHHHHHHHhcCceecccccCcceehhhhHHHHHHHHHHH
Confidence            456788999999999999999997 59999999999999999999887765443332 2467788999999988899999


Q ss_pred             HHHHHhhccChhhHhHhhcchhHHHHHHHHHHHhhcccccccccccchhhhhhhhhchhhee
Q 020034           92 FSFVGIQYSSPTLSTAMLNLIPAFTFVLAIIFRLEKLNWENKSSQAKSLGTFASIGGAFVVT  153 (332)
Q Consensus        92 l~~~gl~~~sa~~A~~i~~~~P~~~~lls~l~~~Ek~~~~~~~s~~~~~gi~l~l~Gv~ll~  153 (332)
                      +||.+++...++...-+--++|++++++|+++++||++.++      |+|+.+..+|++++.
T Consensus        83 ~Yf~ALk~G~as~VvPldk~svvl~~lls~lfL~E~ls~~~------~iG~~LI~~Gailvs  138 (140)
T COG2510          83 LYFRALKKGKASRVVPLDKTSVVLAVLLSILFLGERLSLPT------WIGIVLIVIGAILVS  138 (140)
T ss_pred             HHHHHHhcCCcceEEEcccccHHHHHHHHHHHhcCCCCHHH------HHHHHHHHhCeeeEe
Confidence            99999999999999999999999999999999999999875      999999999998765

>PF08449 UAA: UAA transporter family; InterPro: IPR013657 This family includes transporters with a specificity for UDP-N-acetylglucosamine []

Probab=99.36  E-value=6e-10  Score=104.60  Aligned_cols=252  Identities=14%  Similarity=0.141  Sum_probs=178.4

Q ss_pred             HHHHHHHHHh-cCCC--hHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhhccChh
Q 020034           27 NMEVIKAAMS-KGIN--KYVIIVYSDALSSLFFLFCSFLFHRSERPQLTFSILCSFFLLSVFGCSSQIFSFVGIQYSSPT  103 (332)
Q Consensus        27 ~~~~~K~~l~-~~~~--p~~~~~~R~~~a~i~ll~~~~~~~r~~~~~~~~~~~~~l~~~g~~g~~~~~l~~~gl~~~sa~  103 (332)
                      +......... ....  |..+++..+....++-.+.....+++..++.   .+...+..+++..++..+-+.+++|.|..
T Consensus        15 ~g~~qE~i~~~~~~~~~~~~lt~~q~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~al~~i~~p   91 (303)
T PF08449_consen   15 YGILQEKIMTTPYGSPFPLFLTFVQFAFNALFSFILLSLFKFPKSRKI---PLKKYAILSFLFFLASVLSNAALKYISYP   91 (303)
T ss_pred             HHHHHHHHHcCCCCCcccHHHHHHHHHHHHHHHHHHHHhccccCCCcC---hHHHHHHHHHHHHHHHHHHHHHHHhCChH
Confidence            3344444333 2344  8999999999988877765443321222222   34456677788788889999999999999


Q ss_pred             hHhHhhcchhHHHHHHHHHHHhhcccccccccccchhhhhhhhhchhheeeccCCCCcCCCCCCCCCccccCCCCCcchh
Q 020034          104 LSTAMLNLIPAFTFVLAIIFRLEKLNWENKSSQAKSLGTFASIGGAFVVTFYKGPPLIGELSHSGSPRRLLLSPQLSWIL  183 (332)
Q Consensus       104 ~A~~i~~~~P~~~~lls~l~~~Ek~~~~~~~s~~~~~gi~l~l~Gv~ll~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~  183 (332)
                      .-.++-.+.|+.+++++.+++|+|.+++      |++++++..+|+++....+..+...           ......++..
T Consensus        92 ~~~~~ks~~~i~vmi~~~l~~~k~y~~~------~~~~v~li~~Gv~~~~~~~~~~~~~-----------~~~~~~~~~~  154 (303)
T PF08449_consen   92 TQIVFKSSKPIPVMILGVLILGKRYSRR------QYLSVLLITIGVAIFTLSDSSSSSS-----------SNSSSFSSAL  154 (303)
T ss_pred             HHHHHhhhHHHHHHHHHHHhcCccccHH------HHHHHHHHHhhHheeeecccccccc-----------cccccccchh
Confidence            9999999999999999999998887654      5999999999998876543221110           0111122345


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhcc-hHHHHHHHHHHHHHHHHHHHHHH--HcCCCCCccc--cchhhhHHHHhhh--
Q 020034          184 GGFFLAAEAFMNSAWFILQALILRKFA-AVLIIMFYLFFFNTILSTAFALI--VVSEPSDWKL--GLDIGLVAVLYSV--  256 (332)
Q Consensus       184 G~~l~L~aa~~~A~~~v~~~~~~~~~~-~~~~i~~~~~l~g~i~~~~~~~~--~~~~~~~~~~--~~~~~~~~ll~~g--  256 (332)
                      |+++.+.+.++-+...+.++|..++++ ++....++..+.+.+...+....  .+...+.+..  .....+..++...  
T Consensus       155 G~~ll~~sl~~~a~~~~~qe~~~~~~~~~~~~~mfy~n~~~~~~~~~~~~~l~~~~~~~~~~f~~~~p~~~~~l~~~s~~  234 (303)
T PF08449_consen  155 GIILLLLSLLLDAFTGVYQEKLFKKYGKSPWELMFYTNLFSLPFLLILLFLLPTGEFRSAIRFISAHPSVLLYLLLFSLT  234 (303)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHHHHHHHhhHhhHHHHHHHHhHHHHHHHHHHHHH
Confidence            999999999999999999999877653 56778889999998888877766  3221111111  1111222322222  


Q ss_pred             hhhHHHHHHHHhhcc-h--hhhhcchHHHHHHHHHHHHhCCCccc
Q 020034          257 SSYWHWVSSWLVHMV-P--VENWTSLCINVQALGHCLLYCHGCRH  298 (332)
Q Consensus       257 t~v~~~l~~~a~~~~-~--~s~~~~l~pv~~~i~~~l~lgE~~~~  298 (332)
                      +.++.....+..++. |  .++...+.-+++++++++++||+++.
T Consensus       235 ~~~g~~~i~~~~~~~~al~~t~v~t~Rk~~sillS~~~f~~~~~~  279 (303)
T PF08449_consen  235 GALGQFFIFYLIKKFSALTTTIVTTLRKFLSILLSVIIFGHPLSP  279 (303)
T ss_pred             HHHHHHHHHHHHHhcCchhhhhHHHHHHHHHHHHHHHhcCCcCCh
Confidence            667777777788888 7  88999999999999999999999874

; GO: 0055085 transmembrane transport

>KOG2765 consensus Predicted membrane protein [Function unknown]

Probab=99.34  E-value=1.9e-11  Score=113.81  Aligned_cols=192  Identities=19%  Similarity=0.235  Sum_probs=140.6

Q ss_pred             HHHHHHHHHHhhccChhhHhHhhcchhHHHHHHHHHHHhhcccccccccccchhhhhhhhhchhheeeccCCCCcCCCCC
Q 020034           87 CSSQIFSFVGIQYSSPTLSTAMLNLIPAFTFVLAIIFRLEKLNWENKSSQAKSLGTFASIGGAFVVTFYKGPPLIGELSH  166 (332)
Q Consensus        87 ~~~~~l~~~gl~~~sa~~A~~i~~~~P~~~~lls~l~~~Ek~~~~~~~s~~~~~gi~l~l~Gv~ll~~~~g~~~~~~~~~  166 (332)
                      +++++.+..++++|+.+..+++..++-+||..++.++..||+++.      |.+++.+++.|++++...+....      
T Consensus       170 F~anl~~naALa~TsVAS~TilSStSs~FtL~la~if~~e~ft~s------Kllav~~si~GViiVt~~~s~~~------  237 (416)
T KOG2765|consen  170 FLANLTSNAALAFTSVASTTILSSTSSFFTLFLAAIFPVERFTLS------KLLAVFVSIAGVIIVTMGDSKQN------  237 (416)
T ss_pred             HHHHHHHHHHhhhhhhhhhhhhhhcchHHHHHHHHHcCcchhhHH------HHHHHHHhhccEEEEEecccccc------
Confidence            788889999999999999999999999999999999999999875      69999999999998875432210      


Q ss_pred             CCCCccccCCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHhcc---hHHHHHHHHHHHHHHHHHHHHHHHcC-CCCCcc
Q 020034          167 SGSPRRLLLSPQLSWILGGFFLAAEAFMNSAWFILQALILRKFA---AVLIIMFYLFFFNTILSTAFALIVVS-EPSDWK  242 (332)
Q Consensus       167 ~~~~~~~~~~~~~~~~~G~~l~L~aa~~~A~~~v~~~~~~~~~~---~~~~i~~~~~l~g~i~~~~~~~~~~~-~~~~~~  242 (332)
                      +       +..+.....|+++.+++|+.||+|+++.||...+..   |...+.++..++..+++.|...+... ..+..+
T Consensus       238 ~-------~~~a~~~llG~llaL~sA~~YavY~vllk~~~~~eg~rvdi~lffGfvGLfnllllwP~l~iL~~~~~e~F~  310 (416)
T KOG2765|consen  238 S-------DLPASRPLLGNLLALLSALLYAVYTVLLKRKIGDEGERVDIQLFFGFVGLFNLLLLWPPLIILDFFGEERFE  310 (416)
T ss_pred             c-------cCCccchhHHHHHHHHHHHHHHHHHHHHHhhcccccccccHHHHHHHHHHHHHHHHhHHHHHHHHhccCccc
Confidence            1       112334578999999999999999999998765542   44455556666777777765544421 112223


Q ss_pred             ccchhhhHHHHhhh---hhhHHHHHHHHhhcc-h--hhhhcchHHHHHHHHHHHHhCCCcc
Q 020034          243 LGLDIGLVAVLYSV---SSYWHWVSSWLVHMV-P--VENWTSLCINVQALGHCLLYCHGCR  297 (332)
Q Consensus       243 ~~~~~~~~~ll~~g---t~v~~~l~~~a~~~~-~--~s~~~~l~pv~~~i~~~l~lgE~~~  297 (332)
                      .+...+...+++.+   |.++-++|.++.-.- |  +..-..++...+++...++=|..++
T Consensus       311 lP~~~q~~~vv~~~ligtvvSDylW~~a~~lTs~Lv~TlgmSltIPLA~~aD~l~k~~~~S  371 (416)
T KOG2765|consen  311 LPSSTQFSLVVFNNLIGTVVSDYLWAKAVLLTSPLVVTLGMSLTIPLAMFADVLIKGKHPS  371 (416)
T ss_pred             CCCCceeEeeeHhhHHHHHHHHHHHHHHHHhccchhheeeeeEeeeHHHHHHHHHcCCCCC
Confidence            33333333333333   999999999999888 7  5555666667788888777677765

>TIGR00950 2A78 Carboxylate/Amino Acid/Amine Transporter

Probab=99.26  E-value=1.3e-10  Score=105.97  Aligned_cols=132  Identities=13%  Similarity=0.118  Sum_probs=110.8

Q ss_pred             chhhHHHHHHHHHHHHHHHHHHHHHHHhcCCC--hHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHHH
Q 020034            9 RAALPSVGMVIVLLAQVSNMEVIKAAMSKGIN--KYVIIVYSDALSSLFFLFCSFLFHRSERPQLTFSILCSFFLLSVFG   86 (332)
Q Consensus         9 ~~~~~~l~ll~~~~~wg~~~~~~K~~l~~~~~--p~~~~~~R~~~a~i~ll~~~~~~~r~~~~~~~~~~~~~l~~~g~~g   86 (332)
                      ...++..+.++++++|+.+.+..|...++ .+  +.....+|+.++.+++.++.+..++.  +..+.+++..++..+.++
T Consensus       125 ~~~~G~~~~l~a~~~~a~~~~~~k~~~~~-~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~--~~~~~~~~~~~~~~~~~~  201 (260)
T TIGR00950       125 INPAGLLLGLGSGISFALGTVLYKRLVKK-EGPELLQFTGWVLLLGALLLLPFAWFLGPN--PQALSLQWGALLYLGLIG  201 (260)
T ss_pred             ccHHHHHHHHHHHHHHHHHHHHHhHHhhc-CCchHHHHHHHHHHHHHHHHHHHHHhcCCC--CCcchHHHHHHHHHHHHH
Confidence            45678999999999999999999998753 56  44566678999999999887653322  233566777788888888


Q ss_pred             -HHHHHHHHHHhhccChhhHhHhhcchhHHHHHHHHHHHhhcccccccccccchhhhhhhhhch
Q 020034           87 -CSSQIFSFVGIQYSSPTLSTAMLNLIPAFTFVLAIIFRLEKLNWENKSSQAKSLGTFASIGGA  149 (332)
Q Consensus        87 -~~~~~l~~~gl~~~sa~~A~~i~~~~P~~~~lls~l~~~Ek~~~~~~~s~~~~~gi~l~l~Gv  149 (332)
                       ...+.++++++++.+++.++.+.++.|++++++++++++||++.+      +++|..+.+.|+
T Consensus       202 ~~~~~~~~~~a~~~~~~~~~s~~~~~~pv~~~ll~~~~~~E~~~~~------~~~G~~li~~g~  259 (260)
T TIGR00950       202 TALAYFLWNKGLTLVDPSAASILALAEPLVALLLGLLILGETLSLP------QLIGGALIIAAV  259 (260)
T ss_pred             HHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHHHhCCCCCHH------HHHHHHHHHHhc
Confidence             889999999999999999999999999999999999999999875      489999998886

>PF13536 EmrE: Multidrug resistance efflux transporter

Probab=99.14  E-value=8.2e-11  Score=94.32  Aligned_cols=101  Identities=22%  Similarity=0.331  Sum_probs=82.0

Q ss_pred             HHHHHHHHHHHHHHHHHhhcCC--CCCCCHHHHHHHHHHHHHH-HHHHHHHHHHhhccChhhHhHhhcchhHHHHHHHHH
Q 020034           46 VYSDALSSLFFLFCSFLFHRSE--RPQLTFSILCSFFLLSVFG-CSSQIFSFVGIQYSSPTLSTAMLNLIPAFTFVLAII  122 (332)
Q Consensus        46 ~~R~~~a~i~ll~~~~~~~r~~--~~~~~~~~~~~l~~~g~~g-~~~~~l~~~gl~~~sa~~A~~i~~~~P~~~~lls~l  122 (332)
                      ++|+..+.+++..+....+|..  .+..+.+++......|.++ ..++.++++++++++ +.++.+.+++|+++.+++++
T Consensus         2 a~r~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~a~~~~~-~~v~~i~~~~pi~~~ll~~~   80 (113)
T PF13536_consen    2 AFRYLFSVLFLLIILLIRGRLRDLFRALRRKPWLWLILAGLLGFGVAYLLFFYALSYAP-ALVAAIFSLSPIFTALLSWL   80 (113)
T ss_pred             HHHHHHHHHHHHHHHHHHccHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHHhCc-HHHHHHHHHHHHHHHHHHHH
Confidence            6899999999998776532211  1122334556667778888 699999999999999 58889999999999999999


Q ss_pred             HHhhcccccccccccchhhhhhhhhchhhee
Q 020034          123 FRLEKLNWENKSSQAKSLGTFASIGGAFVVT  153 (332)
Q Consensus       123 ~~~Ek~~~~~~~s~~~~~gi~l~l~Gv~ll~  153 (332)
                      ++|||+++++      ++|+.++++|++++.
T Consensus        81 ~~~er~~~~~------~~a~~l~~~Gv~li~  105 (113)
T PF13536_consen   81 FFKERLSPRR------WLAILLILIGVILIA  105 (113)
T ss_pred             HhcCCCCHHH------HHHHHHHHHHHHHHh
Confidence            9999998765      999999999999886

>PF04142 Nuc_sug_transp: Nucleotide-sugar transporter; InterPro: IPR007271 This family of membrane proteins transport nucleotide sugars from the cytoplasm into golgi vesicles

Probab=99.06  E-value=4.4e-08  Score=89.11  Aligned_cols=212  Identities=13%  Similarity=0.148  Sum_probs=140.3

Q ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHHhhccChhhHhHhhcchhHHHHHHHHHHHhhcccccccccccchhhhhhhhhchhh
Q 020034           72 TFSILCSFFLLSVFGCSSQIFSFVGIQYSSPTLSTAMLNLIPAFTFVLAIIFRLEKLNWENKSSQAKSLGTFASIGGAFV  151 (332)
Q Consensus        72 ~~~~~~~l~~~g~~g~~~~~l~~~gl~~~sa~~A~~i~~~~P~~~~lls~l~~~Ek~~~~~~~s~~~~~gi~l~l~Gv~l  151 (332)
                      ++|+..+..+=+++..+++.+.+.++++.+|+.-.++.++-.++|++++++++|.|++.+|      |+++.+-++|+.+
T Consensus        13 ~~~~~~~~~vPA~lY~~qn~L~~~al~~ld~~t~qvl~q~kIl~TAl~s~~~L~r~ls~~q------W~aL~lL~~Gv~l   86 (244)
T PF04142_consen   13 SPKDTLKLAVPALLYAIQNNLQFVALSYLDPSTFQVLSQSKILFTALFSVLLLKRRLSRRQ------WLALFLLVAGVVL   86 (244)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHhhHHHHHHHHHHHHHHcccchhh------HHHHHHHHHHHhe
Confidence            4567778888888888999999999999999999999999999999999999999988764      9999999999988


Q ss_pred             eeeccCCCCcCCCCCCCCCccccCCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHhcc-hHHHHHHHHHHHHHHHHHHH
Q 020034          152 VTFYKGPPLIGELSHSGSPRRLLLSPQLSWILGGFFLAAEAFMNSAWFILQALILRKFA-AVLIIMFYLFFFNTILSTAF  230 (332)
Q Consensus       152 l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~G~~l~L~aa~~~A~~~v~~~~~~~~~~-~~~~i~~~~~l~g~i~~~~~  230 (332)
                      +...+....+. ++..+..   ......+...|.++.++++++-++..++..|.+|+.+ +...-+....+.|.++.++.
T Consensus        87 v~~~~~~~~~~-~~~~~~~---~~~~~~~~~~G~~~vl~~~~~S~~agVy~E~~lK~~~~s~~~~N~qL~~~gi~~~~~~  162 (244)
T PF04142_consen   87 VQLSSSQSSDN-SSSSSVH---HDASNQNPLLGLLAVLAAAFLSGFAGVYFEKLLKRSNVSLWIQNMQLYLFGILFNLLA  162 (244)
T ss_pred             eecCCcccccc-ccccccc---cccccchhHhHHHHHHHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHHHH
Confidence            76432211000 0000000   0011234578999999999999999999999988853 34444555566666666655


Q ss_pred             HHHHcCC-C------CCccccchhhhHHHHhhhhhhHHHHHHHHhhcc-h--hhhhcchHHHHHHHHHHHHhCCCccc
Q 020034          231 ALIVVSE-P------SDWKLGLDIGLVAVLYSVSSYWHWVSSWLVHMV-P--VENWTSLCINVQALGHCLLYCHGCRH  298 (332)
Q Consensus       231 ~~~~~~~-~------~~~~~~~~~~~~~ll~~gt~v~~~l~~~a~~~~-~--~s~~~~l~pv~~~i~~~l~lgE~~~~  298 (332)
                      ....+.+ .      ++++.   ..|..+...  .++=.+....+|+. .  =+.-..+.-+++.+.+++++|.+++.
T Consensus       163 ~~~~~~~~~~~~g~f~G~~~---~~~~~i~~~--a~gGllva~v~KyadnI~K~fa~a~siv~t~~~s~~lf~~~~s~  235 (244)
T PF04142_consen  163 LLLSDGSAISESGFFHGYSW---WVWIVIFLQ--AIGGLLVAFVLKYADNIVKGFATAVSIVLTAVLSVLLFGFPPSL  235 (244)
T ss_pred             HhcccccccccCCchhhcch---HHHHHHHHH--HHhhHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhCCCCch
Confidence            4443321 1      12211   122222222  22233333444444 2  22223345578889999999999975

P78382 from SWISSPROT transports CMP-sialic acid, P78381 from SWISSPROT transports UDP-galactose and Q9Y2D2 from SWISSPROT transports UDP-GlcNAc. This family has some but not complete overlap with the UDP-galactose transporter family IPR004689 from INTERPRO.; GO: 0005351 sugar:hydrogen symporter activity, 0008643 carbohydrate transport, 0000139 Golgi membrane, 0016021 integral to membrane

>PRK10532 threonine and homoserine efflux system; Provisional

Probab=98.93  E-value=2.2e-08  Score=93.48  Aligned_cols=135  Identities=13%  Similarity=0.060  Sum_probs=107.9

Q ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHHH-HH
Q 020034           10 AALPSVGMVIVLLAQVSNMEVIKAAMSKGINKYVIIVYSDALSSLFFLFCSFLFHRSERPQLTFSILCSFFLLSVFG-CS   88 (332)
Q Consensus        10 ~~~~~l~ll~~~~~wg~~~~~~K~~l~~~~~p~~~~~~R~~~a~i~ll~~~~~~~r~~~~~~~~~~~~~l~~~g~~g-~~   88 (332)
                      ...+.++.+.++++|+...+..|...+ +.+|...... ..++++.++++......  ....++..+...+..|+++ .+
T Consensus       146 ~~~G~ll~l~aa~~~a~~~v~~r~~~~-~~~~~~~~~~-~~~~~~~l~~~~~~~~~--~~~~~~~~~~~~l~lgv~~t~~  221 (293)
T PRK10532        146 DLTGAALALGAGACWAIYILSGQRAGA-EHGPATVAIG-SLIAALIFVPIGALQAG--EALWHWSILPLGLAVAILSTAL  221 (293)
T ss_pred             ChHHHHHHHHHHHHHHHHHHHHHHHhc-cCCchHHHHH-HHHHHHHHHHHHHHccC--cccCCHHHHHHHHHHHHHHHHH
Confidence            345888999999999999999998765 4788777544 46666777776654321  1123445555566788888 88


Q ss_pred             HHHHHHHHhhccChhhHhHhhcchhHHHHHHHHHHHhhcccccccccccchhhhhhhhhchhheee
Q 020034           89 SQIFSFVGIQYSSPTLSTAMLNLIPAFTFVLAIIFRLEKLNWENKSSQAKSLGTFASIGGAFVVTF  154 (332)
Q Consensus        89 ~~~l~~~gl~~~sa~~A~~i~~~~P~~~~lls~l~~~Ek~~~~~~~s~~~~~gi~l~l~Gv~ll~~  154 (332)
                      .+.++++++++.+++.++.+.++.|++..++++++++|+++..      +++|.++.+.|++....
T Consensus       222 ~~~l~~~~~~~~~a~~as~~~~l~Pv~a~l~~~l~lgE~~~~~------~~iG~~lIl~~~~~~~~  281 (293)
T PRK10532        222 PYSLEMIALTRLPTRTFGTLMSMEPALAAVSGMIFLGETLTLI------QWLALGAIIAASMGSTL  281 (293)
T ss_pred             HHHHHHHHHHhcChhHHHHHHHhHHHHHHHHHHHHhCCCCcHH------HHHHHHHHHHHHHHHHh
Confidence            9999999999999999999999999999999999999999875      59999999999987653

>PRK11272 putative DMT superfamily transporter inner membrane protein; Provisional

Probab=98.92  E-value=2.4e-08  Score=93.22  Aligned_cols=136  Identities=15%  Similarity=0.022  Sum_probs=111.2

Q ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHHH-HH
Q 020034           10 AALPSVGMVIVLLAQVSNMEVIKAAMSKGINKYVIIVYSDALSSLFFLFCSFLFHRSERPQLTFSILCSFFLLSVFG-CS   88 (332)
Q Consensus        10 ~~~~~l~ll~~~~~wg~~~~~~K~~l~~~~~p~~~~~~R~~~a~i~ll~~~~~~~r~~~~~~~~~~~~~l~~~g~~g-~~   88 (332)
                      ...+.++.+.++++|+......|... . -++....++++.++++.+.++............+.+.+..+...++++ .+
T Consensus       148 ~~~G~l~~l~a~~~~a~~~~~~~~~~-~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~i~~s~~  225 (292)
T PRK11272        148 NPWGAILILIASASWAFGSVWSSRLP-L-PVGMMAGAAEMLAAGVVLLIASLLSGERLTALPTLSGFLALGYLAVFGSII  225 (292)
T ss_pred             chHHHHHHHHHHHHHHHHHHHHHhcC-C-CcchHHHHHHHHHHHHHHHHHHHHcCCcccccCCHHHHHHHHHHHHHHHHH
Confidence            35688999999999999999999853 2 345667788999999988887654322111112456777888889988 89


Q ss_pred             HHHHHHHHhhccChhhHhHhhcchhHHHHHHHHHHHhhcccccccccccchhhhhhhhhchhhee
Q 020034           89 SQIFSFVGIQYSSPTLSTAMLNLIPAFTFVLAIIFRLEKLNWENKSSQAKSLGTFASIGGAFVVT  153 (332)
Q Consensus        89 ~~~l~~~gl~~~sa~~A~~i~~~~P~~~~lls~l~~~Ek~~~~~~~s~~~~~gi~l~l~Gv~ll~  153 (332)
                      .+.++++++++.++++++.+.++.|++++++++++++|+++..      +++|.++.+.|++++.
T Consensus       226 ~~~l~~~~~~~~~~~~~s~~~~l~Pi~a~i~~~~~l~E~~t~~------~iiG~~lIi~gv~~~~  284 (292)
T PRK11272        226 AISAYMYLLRNVRPALATSYAYVNPVVAVLLGTGLGGETLSPI------EWLALGVIVFAVVLVT  284 (292)
T ss_pred             HHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHcCCCCcHH------HHHHHHHHHHHHHHHH
Confidence            9999999999999999999999999999999999999998875      4999999999998764

>KOG1441 consensus Glucose-6-phosphate/phosphate and phosphoenolpyruvate/phosphate antiporter [Carbohydrate transport and metabolism; Amino acid transport and metabolism]

Probab=98.87  E-value=2.2e-08  Score=93.67  Aligned_cols=252  Identities=13%  Similarity=0.121  Sum_probs=171.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHh--cCCChHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHHHHHHHH
Q 020034           14 SVGMVIVLLAQVSNMEVIKAAMS--KGINKYVIIVYSDALSSLFFLFCSFLFHRSERPQLTFSILCSFFLLSVFGCSSQI   91 (332)
Q Consensus        14 ~l~ll~~~~~wg~~~~~~K~~l~--~~~~p~~~~~~R~~~a~i~ll~~~~~~~r~~~~~~~~~~~~~l~~~g~~g~~~~~   91 (332)
                      .+....--++-.+.....|..++  +.--|..++..++..+.+..+....+..++..+..++..+..++.+|+..++...
T Consensus        19 ~~~~~~w~~~~v~~~~~nK~il~~~~f~~p~~lt~~~~~~~~l~~~v~~~l~~~~~~~~~~~~~~~~llpl~~~~~~~~v   98 (316)
T KOG1441|consen   19 GIAFAIWYVLSVGVIILNKYILSKYGFPFPITLTMLHLFCGALALLVIKVLKLVPPSKISSKLPLRTLLPLGLVFCISHV   98 (316)
T ss_pred             HHHHHHHhhhheeeEEeeHhhhccCCCCCccHHHHHHHHHHHHHHHHHHHhcCCCCCccccccchHHHHHHHHHHHHHHH
Confidence            33333333343445556788887  4345899999988888777766544322211111123456677788888888888


Q ss_pred             HHHHHhhccChhhHhHhhcchhHHHHHHHHHHHhhcccccccccccchhhhhhhhhchhheeeccCCCCcCCCCCCCCCc
Q 020034           92 FSFVGIQYSSPTLSTAMLNLIPAFTFVLAIIFRLEKLNWENKSSQAKSLGTFASIGGAFVVTFYKGPPLIGELSHSGSPR  171 (332)
Q Consensus        92 l~~~gl~~~sa~~A~~i~~~~P~~~~lls~l~~~Ek~~~~~~~s~~~~~gi~l~l~Gv~ll~~~~g~~~~~~~~~~~~~~  171 (332)
                      +-..++.+.+.+-...+=.++|++++++++++.+|+.+++.      +..++....|+.+.+.   ++            
T Consensus        99 ~~n~Sl~~v~VsF~q~iKa~~P~~tvl~~~~~~~~~~s~~~------~lsL~piv~GV~ias~---~e------------  157 (316)
T KOG1441|consen   99 LGNVSLSYVPVSFYQTIKALMPPFTVLLSVLLLGKTYSSMT------YLSLLPIVFGVAIASV---TE------------  157 (316)
T ss_pred             hcchhhhccchhHHHHHHhhcchhHHHHHHHHhCCCCcceE------EEEEEEeeeeEEEeee---cc------------
Confidence            89999999999999999999999999999999999987654      6778888888876552   11            


Q ss_pred             cccCCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHH--hc-chHHHHHHHHHHHHHHHHH-HHHHHHcCCCC------Cc
Q 020034          172 RLLLSPQLSWILGGFFLAAEAFMNSAWFILQALILR--KF-AAVLIIMFYLFFFNTILST-AFALIVVSEPS------DW  241 (332)
Q Consensus       172 ~~~~~~~~~~~~G~~l~L~aa~~~A~~~v~~~~~~~--~~-~~~~~i~~~~~l~g~i~~~-~~~~~~~~~~~------~~  241 (332)
                           ...+ ..|.+..+++.++.+...++.++.++  +. -+++....++.-++.+.++ |.....++...      .|
T Consensus       158 -----~~fn-~~G~i~a~~s~~~~al~~I~~~~ll~~~~~~~~~~~ll~y~ap~s~~~Ll~P~~~~~~~~~~~~~~~~~~  231 (316)
T KOG1441|consen  158 -----LSFN-LFGFISAMISNLAFALRNILSKKLLTSKGESLNSMNLLYYTAPISLIFLLIPFLDYVEGNKFVGFLTAPW  231 (316)
T ss_pred             -----cccc-HHHHHHHHHHHHHHHHHHHHHHHhhhccccccCchHHHHHhhhHHHHHHhcchHhhhcccceeeeecccc
Confidence                 1233 57999999999999999999999874  22 1678888888889988888 77665554321      22


Q ss_pred             cccchhhhHHHHhhhhhhHH---HHHHHHhhcc-h--hhhhcchHHHHHHHHHHHHhCCCcc
Q 020034          242 KLGLDIGLVAVLYSVSSYWH---WVSSWLVHMV-P--VENWTSLCINVQALGHCLLYCHGCR  297 (332)
Q Consensus       242 ~~~~~~~~~~ll~~gt~v~~---~l~~~a~~~~-~--~s~~~~l~pv~~~i~~~l~lgE~~~  297 (332)
                      +.    .....++. +..+|   ...++.+.+. |  -++...+--++.++.+|++++|+.+
T Consensus       232 ~~----~~~~~~~~-sv~~f~~Nls~f~~ig~tSalT~~V~g~~K~~~vi~~s~~iF~~pvt  288 (316)
T KOG1441|consen  232 FV----TFLILLLN-SVLAFLLNLSAFLVIGRTSALTYSVAGHMKRIVVIVVSWLIFGNPVT  288 (316)
T ss_pred             ch----hhHHHHHH-HHHHHHHHHHHHHHHcccCchhhhhhccceEEEEEEeEeeeecCCCc
Confidence            22    12222222 32333   2234555666 5  4555555556666778888888664

>PRK11689 aromatic amino acid exporter; Provisional

Probab=98.82  E-value=6.8e-08  Score=90.29  Aligned_cols=132  Identities=16%  Similarity=0.106  Sum_probs=101.6

Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHHHHHHH
Q 020034           11 ALPSVGMVIVLLAQVSNMEVIKAAMSKGINKYVIIVYSDALSSLFFLFCSFLFHRSERPQLTFSILCSFFLLSVFGCSSQ   90 (332)
Q Consensus        11 ~~~~l~ll~~~~~wg~~~~~~K~~l~~~~~p~~~~~~R~~~a~i~ll~~~~~~~r~~~~~~~~~~~~~l~~~g~~g~~~~   90 (332)
                      ..+.++.+.++++|+.+.+..|...+ +.+|....   +..+++.+.+.... ........+.+.+..++..++...+.+
T Consensus       155 ~~G~~~~l~aa~~~A~~~v~~k~~~~-~~~~~~~~---~~~~~~~l~~~~~~-~~~~~~~~~~~~~~~l~~~~~~t~~~~  229 (295)
T PRK11689        155 PLSYGLAFIGAFIWAAYCNVTRKYAR-GKNGITLF---FILTALALWIKYFL-SPQPAMVFSLPAIIKLLLAAAAMGFGY  229 (295)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHhhccC-CCCchhHH---HHHHHHHHHHHHHH-hcCccccCCHHHHHHHHHHHHHHHHHH
Confidence            34788999999999999999998644 47877653   23444444443333 221112345666777776665448899


Q ss_pred             HHHHHHhhccChhhHhHhhcchhHHHHHHHHHHHhhcccccccccccchhhhhhhhhchhhee
Q 020034           91 IFSFVGIQYSSPTLSTAMLNLIPAFTFVLAIIFRLEKLNWENKSSQAKSLGTFASIGGAFVVT  153 (332)
Q Consensus        91 ~l~~~gl~~~sa~~A~~i~~~~P~~~~lls~l~~~Ek~~~~~~~s~~~~~gi~l~l~Gv~ll~  153 (332)
                      .++++++++.+++.++.+.++.|++..++++++++|+++..      +++|.++.+.|+++..
T Consensus       230 ~l~~~al~~~~a~~~s~~~~l~Pv~a~i~~~~~lgE~~~~~------~~iG~~lI~~gv~~~~  286 (295)
T PRK11689        230 AAWNVGILHGNMTLLATASYFTPVLSAALAALLLSTPLSFS------FWQGVAMVTAGSLLCW  286 (295)
T ss_pred             HHHHHHHHccCHHHHHHHHHhHHHHHHHHHHHHhCCCCcHH------HHHHHHHHHHhHHHHh
Confidence            99999999999999999999999999999999999999875      4999999999997764

>PLN00411 nodulin MtN21 family protein; Provisional

Probab=98.77  E-value=1.5e-07  Score=90.36  Aligned_cols=135  Identities=10%  Similarity=0.121  Sum_probs=101.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhcCCCh-HHHHHHHHHHHHHHHHHHHHHhhcCCCC----CCCHHHHHHHHHHHHHHH
Q 020034           13 PSVGMVIVLLAQVSNMEVIKAAMSKGINK-YVIIVYSDALSSLFFLFCSFLFHRSERP----QLTFSILCSFFLLSVFGC   87 (332)
Q Consensus        13 ~~l~ll~~~~~wg~~~~~~K~~l~~~~~p-~~~~~~R~~~a~i~ll~~~~~~~r~~~~----~~~~~~~~~l~~~g~~g~   87 (332)
                      +..+++.++++|+.+.+..|..... .|| ...+++...++++.+.+.....++...+    ..... ...++..++...
T Consensus       190 G~~l~l~aa~~wa~~~il~~~~~~~-~~~~~~~t~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~-~~~i~y~~i~t~  267 (358)
T PLN00411        190 GGALLTIQGIFVSVSFILQAHIMSE-YPAAFTVSFLYTVCVSIVTSMIGLVVEKNNPSVWIIHFDIT-LITIVTMAIITS  267 (358)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHH-cCcHhHHHHHHHHHHHHHHHHHHHHHccCCcccceeccchH-HHHHHHHHHHHH
Confidence            6678889999999999999987654 544 4667777777777666655543321111    11222 222333444336


Q ss_pred             HHHHHHHHHhhccChhhHhHhhcchhHHHHHHHHHHHhhcccccccccccchhhhhhhhhchhheeec
Q 020034           88 SSQIFSFVGIQYSSPTLSTAMLNLIPAFTFVLAIIFRLEKLNWENKSSQAKSLGTFASIGGAFVVTFY  155 (332)
Q Consensus        88 ~~~~l~~~gl~~~sa~~A~~i~~~~P~~~~lls~l~~~Ek~~~~~~~s~~~~~gi~l~l~Gv~ll~~~  155 (332)
                      +.+.++++++++.+|+.++...++.|++++++++++++|+++..+      ++|.++.+.|+.+....
T Consensus       268 lay~lw~~~v~~~ga~~as~~~~L~PV~a~llg~l~LgE~lt~~~------~iG~~LIl~Gv~l~~~~  329 (358)
T PLN00411        268 VYYVIHSWTVRHKGPLYLAIFKPLSILIAVVMGAIFLNDSLYLGC------LIGGILITLGFYAVMWG  329 (358)
T ss_pred             HHHHHHHHHHhccCchHHHHHHhHHHHHHHHHHHHHhCCCCcHHH------HHHHHHHHHHHHHHHhh
Confidence            678899999999999999999999999999999999999998764      99999999999887643

>KOG2234 consensus Predicted UDP-galactose transporter [Carbohydrate transport and metabolism]

Probab=98.76  E-value=2.3e-05  Score=73.52  Aligned_cols=270  Identities=13%  Similarity=0.130  Sum_probs=173.2

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHhcC---CChHHHHHHHHHHHHHHHHHHHHHhhcC--CC--CCC------CHHHHHH
Q 020034           12 LPSVGMVIVLLAQVSNMEVIKAAMSKG---INKYVIIVYSDALSSLFFLFCSFLFHRS--ER--PQL------TFSILCS   78 (332)
Q Consensus        12 ~~~l~ll~~~~~wg~~~~~~K~~l~~~---~~p~~~~~~R~~~a~i~ll~~~~~~~r~--~~--~~~------~~~~~~~   78 (332)
                      ..++.++...+-+++.....|+.-..+   +.|.+..+.--.+-.++.+...+...|+  ++  ..+      .+++.++
T Consensus        15 ~k~~~l~~~t~~~~~l~l~l~ys~~~~~~~f~~tt~v~~~Ei~Kl~~c~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~lk   94 (345)
T KOG2234|consen   15 MKYLSLIVLTAQNTALTLLLRYSRTREKPMFLPTTAVFLTEVIKLVFCLFLLLFEERKYAKKSLKSLSKEILAAPRETLK   94 (345)
T ss_pred             HHHHHHHHHHHHHhhHHHHHHHHhcCCCCCcchhHHHHHHHHHHHHHHHHHHHHHhhHHhhhhhhhcCHHHHhChHHHHH
Confidence            456777778888899999999876554   6677777777776666665554443222  11  112      2446667


Q ss_pred             HHHHHHHHHHHHHHHHHHhhccChhhHhHhhcchhHHHHHHHHHHHhhcccccccccccchhhhhhhhhchhheeeccCC
Q 020034           79 FFLLSVFGCSSQIFSFVGIQYSSPTLSTAMLNLIPAFTFVLAIIFRLEKLNWENKSSQAKSLGTFASIGGAFVVTFYKGP  158 (332)
Q Consensus        79 l~~~g~~g~~~~~l~~~gl~~~sa~~A~~i~~~~P~~~~lls~l~~~Ek~~~~~~~s~~~~~gi~l~l~Gv~ll~~~~g~  158 (332)
                      ..+=+++..+++.++|.++.+.+|+.-.+..++--+-|++++.+++++|++++|      |.++++-++|+.++-....+
T Consensus        95 ~~vPa~iYalqNnl~yval~~ldaatyqVt~qlKI~tTA~f~vl~L~rkLs~~Q------w~Al~lL~~Gv~~vQ~~~~~  168 (345)
T KOG2234|consen   95 VSVPALIYALQNNLQYVALSNLDAATYQVTYQLKILTTAIFSVLILRRKLSRLQ------WMALVLLFAGVALVQLPSLS  168 (345)
T ss_pred             HHHHHHHHHHhhhHHHHHHhcCCchhhhhhhhHHHHHHHHHHHHHHhhhhhHHH------HHHHHHHHHHHHHHhccCCC
Confidence            777777777888899999999999999999999999999999999999998765      99999999999887622111


Q ss_pred             CCcCCCCCCCCCccccCCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHhcc-hHHHHHHHHHHHHHHHHHHHHHHHcCC
Q 020034          159 PLIGELSHSGSPRRLLLSPQLSWILGGFFLAAEAFMNSAWFILQALILRKFA-AVLIIMFYLFFFNTILSTAFALIVVSE  237 (332)
Q Consensus       159 ~~~~~~~~~~~~~~~~~~~~~~~~~G~~l~L~aa~~~A~~~v~~~~~~~~~~-~~~~i~~~~~l~g~i~~~~~~~~~~~~  237 (332)
                      . +.  .+       ......+...|...++++++.-+...++..|.+|+-. +...-+.-..++|.+..+...+..+..
T Consensus       169 ~-~~--a~-------~~~~~~n~~~G~~avl~~c~~SgfAgvYfEkiLK~s~~s~wi~NiqL~~~g~~f~~l~~~~~d~~  238 (345)
T KOG2234|consen  169 P-TG--AK-------SESSAQNPFLGLVAVLVACFLSGFAGVYFEKILKGSNVSLWIRNIQLYFFGILFNLLTILLQDGE  238 (345)
T ss_pred             C-CC--cc-------CCCcccchhhhHHHHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHHHhhcccc
Confidence            1 00  00       0122345678999999999999999999999987743 233333334456655555544443321


Q ss_pred             CCCcc---cc-chhhhHHHHhhh-hhhHHHHHHHHhhcc-hhhhhcchHHHHHHHHHHHHhCCCccc
Q 020034          238 PSDWK---LG-LDIGLVAVLYSV-SSYWHWVSSWLVHMV-PVENWTSLCINVQALGHCLLYCHGCRH  298 (332)
Q Consensus       238 ~~~~~---~~-~~~~~~~ll~~g-t~v~~~l~~~a~~~~-~~s~~~~l~pv~~~i~~~l~lgE~~~~  298 (332)
                      ...|.   .. ...-|..++-.+ +++.-.+..+=..++ . +....+..+++++.++.++|-+++.
T Consensus       239 ~i~~~gff~G~s~~vw~vVl~~a~gGLlvs~v~KyADnIlK-~f~~s~aiilt~v~S~~Lf~~~~t~  304 (345)
T KOG2234|consen  239 AINEYGFFYGYSSIVWLVVLLNAVGGLLVSLVMKYADNILK-GFSTSVAIILTTVASIALFDFQLTL  304 (345)
T ss_pred             ccccCCccccccHHHHHHHHHHhccchhHHHHHHHhHHHHH-HHHHHHHHHHHHHHHHHHccCCchH
Confidence            10011   01 112233444333 333333322222333 2 1111245577888888888888864

>COG2510 Predicted membrane protein [Function unknown]

Probab=98.75  E-value=3.6e-08  Score=79.03  Aligned_cols=127  Identities=9%  Similarity=-0.054  Sum_probs=98.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHcCCCCCccccchhhhHHHHhhh--hhhHHH
Q 020034          185 GFFLAAEAFMNSAWFILQALILRKFAAVLIIMFYLFFFNTILSTAFALIVVSEPSDWKLGLDIGLVAVLYSV--SSYWHW  262 (332)
Q Consensus       185 ~~l~L~aa~~~A~~~v~~~~~~~~~~~~~~i~~~~~l~g~i~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~g--t~v~~~  262 (332)
                      .++.+++|+++++-.++.|--+++. ||..-+....++..+.+....+..+.....-.. ....|..++..|  ++++..
T Consensus         5 ~~~ALLsA~fa~L~~iF~KIGl~~v-dp~~At~IRtiVi~~~l~~v~~~~g~~~~~~~~-~~k~~lflilSGla~glswl   82 (140)
T COG2510           5 IIYALLSALFAGLTPIFAKIGLEGV-DPDFATTIRTIVILIFLLIVLLVTGNWQAGGEI-GPKSWLFLILSGLAGGLSWL   82 (140)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhcccc-CccHHHHHHHHHHHHHHHHHHHhcCceeccccc-CcceehhhhHHHHHHHHHHH
Confidence            5688999999999999988777777 588888899988888888777766532211111 234566677777  999999


Q ss_pred             HHHHHhhcc--h-hhhhcchHHHHHHHHHHHHhCCCccccceeeeeecccCCcCCcceeeeccce
Q 020034          263 VSSWLVHMV--P-VENWTSLCINVQALGHCLLYCHGCRHCRRRFLSWKFNWSNDNCSRILCSDVG  324 (332)
Q Consensus       263 l~~~a~~~~--~-~s~~~~l~pv~~~i~~~l~lgE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  324 (332)
                      +|++++++-  | +.++.-..|+++++++++++||+++.         ++|  .+|.+|.+|.+.
T Consensus        83 ~Yf~ALk~G~as~VvPldk~svvl~~lls~lfL~E~ls~---------~~~--iG~~LI~~Gail  136 (140)
T COG2510          83 LYFRALKKGKASRVVPLDKTSVVLAVLLSILFLGERLSL---------PTW--IGIVLIVIGAIL  136 (140)
T ss_pred             HHHHHHhcCCcceEEEcccccHHHHHHHHHHHhcCCCCH---------HHH--HHHHHHHhCeee
Confidence            999999999  4 99999999999999999999999984         332  466666666654

>TIGR03340 phn_DUF6 phosphonate utilization associated putative membrane protein

Probab=98.71  E-value=7.9e-08  Score=89.17  Aligned_cols=134  Identities=15%  Similarity=0.035  Sum_probs=91.8

Q ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHHHhcCCChH----HHHHHHHHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHH
Q 020034           10 AALPSVGMVIVLLAQVSNMEVIKAAMSKGINKY----VIIVYSDALSSLFFLFCSFLFHRSERPQLTFSILCSFFLLSVF   85 (332)
Q Consensus        10 ~~~~~l~ll~~~~~wg~~~~~~K~~l~~~~~p~----~~~~~R~~~a~i~ll~~~~~~~r~~~~~~~~~~~~~l~~~g~~   85 (332)
                      +.++..+.++++++|+...+..|...+ +.+|.    ......+...++.+.+.....+++ ........+......+.+
T Consensus       142 ~~~g~~~~l~aal~~a~~~i~~k~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~  219 (281)
T TIGR03340       142 RRKAYAWALAAALGTAIYSLSDKAAAL-GVPAFYSALGYLGIGFLAMGWPFLLLYLKRHGR-SMFPYARQILPSATLGGL  219 (281)
T ss_pred             chhHHHHHHHHHHHHHHhhhhcccccc-chhcccccHHHHHHHHHHHHHHHHHHHHHHhcc-chhhhHHHHHHHHHHHHH
Confidence            345777888999999999999987532 24442    223333333322222222111111 111122233344555555


Q ss_pred             H-HHHHHHHHHHhhccChhhHhHhhcchhHHHHHHHHHHHhhcccccccccccchhhhhhhhhchhh
Q 020034           86 G-CSSQIFSFVGIQYSSPTLSTAMLNLIPAFTFVLAIIFRLEKLNWENKSSQAKSLGTFASIGGAFV  151 (332)
Q Consensus        86 g-~~~~~l~~~gl~~~sa~~A~~i~~~~P~~~~lls~l~~~Ek~~~~~~~s~~~~~gi~l~l~Gv~l  151 (332)
                      . .+.+.++++++++.+++.++.+.++.|++..++++++++|+++..      +++|..+.+.|+.+
T Consensus       220 ~s~l~~~l~~~al~~~~a~~~~~~~~l~pv~a~l~g~~~lgE~~~~~------~~iG~~lil~Gv~l  280 (281)
T TIGR03340       220 MIGGAYALVLWAMTRLPVATVVALRNTSIVFAVVLGIWFLNERWYLT------RLMGVCIIVAGLVV  280 (281)
T ss_pred             HHHHHHHHHHHHHhhCCceEEEeecccHHHHHHHHHHHHhCCCccHH------HHHHHHHHHHhHHh
Confidence            5 788999999999999999999999999999999999999999875      49999999999865

This family of hydrophobic proteins has some homology to families of integral membrane proteins such as (pfam00892) and may be a permease. It occurs in the vicinity of various types of operons for the catabolism of phosphonates in Vibrio, Pseudomonas, Polaromonas and Thiomicrospira.

>PRK11453 O-acetylserine/cysteine export protein; Provisional

Probab=98.67  E-value=5.8e-07  Score=84.14  Aligned_cols=137  Identities=14%  Similarity=0.127  Sum_probs=103.2

Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHhcC--CChHHHHHHHHHHHHHHHHHHHHHhhcCC-----CCCCCHHHHHHHHHHH
Q 020034           11 ALPSVGMVIVLLAQVSNMEVIKAAMSKG--INKYVIIVYSDALSSLFFLFCSFLFHRSE-----RPQLTFSILCSFFLLS   83 (332)
Q Consensus        11 ~~~~l~ll~~~~~wg~~~~~~K~~l~~~--~~p~~~~~~R~~~a~i~ll~~~~~~~r~~-----~~~~~~~~~~~l~~~g   83 (332)
                      ..+.++.+.++++|+...+..|...+..  .+......+-..++.+.+.......+...     ....+.+.+..++..|
T Consensus       142 ~~G~~l~l~aal~~a~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~  221 (299)
T PRK11453        142 MLGFMLTLAAAFSWACGNIFNKKIMSHSTRPAVMSLVVWSALIPIIPFFVASLILDGSATMIHSLVTIDMTTILSLMYLA  221 (299)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhcccCccchhHHHHHHHHHHHHHHHHHHHHhcCchhhhhhhccCCHHHHHHHHHHH
Confidence            4688899999999999999999864331  22233344444444443333333322211     1134567788888899


Q ss_pred             HHH-HHHHHHHHHHhhccChhhHhHhhcchhHHHHHHHHHHHhhcccccccccccchhhhhhhhhchhhee
Q 020034           84 VFG-CSSQIFSFVGIQYSSPTLSTAMLNLIPAFTFVLAIIFRLEKLNWENKSSQAKSLGTFASIGGAFVVT  153 (332)
Q Consensus        84 ~~g-~~~~~l~~~gl~~~sa~~A~~i~~~~P~~~~lls~l~~~Ek~~~~~~~s~~~~~gi~l~l~Gv~ll~  153 (332)
                      +++ .+.+.+++.++++.++++++.+.++.|++..++++++++|+++..      +++|.++.++|+.+..
T Consensus       222 i~~t~~~~~l~~~~l~~~~a~~~s~~~~l~Pv~a~~~~~l~lgE~~~~~------~~iG~~lI~~gv~l~~  286 (299)
T PRK11453        222 FVATIVGYGIWGTLLGRYETWRVAPLSLLVPVVGLASAALLLDERLTGL------QFLGAVLIMAGLYINV  286 (299)
T ss_pred             HHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHhCCCccHH------HHHHHHHHHHHHHHHh
Confidence            888 899999999999999999999999999999999999999999875      4999999999997754

>PF00892 EamA: EamA-like transporter family; InterPro: IPR000620 This domain is found in proteins including the Erwinia chrysanthemi PecM protein, which is involved in pectinase, cellulase and blue pigment regulation; and the Salmonella typhimurium PagO protein, the function of which is unknown

Probab=98.67  E-value=8.9e-08  Score=76.75  Aligned_cols=101  Identities=16%  Similarity=0.185  Sum_probs=79.2

Q ss_pred             HHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHcCCC-CCccccchhhhHHHHhhh---hhhHHHHHHHHh
Q 020034          193 FMNSAWFILQALILRKFAAVLIIMFYLFFFNTILSTAFALIVVSEP-SDWKLGLDIGLVAVLYSV---SSYWHWVSSWLV  268 (332)
Q Consensus       193 ~~~A~~~v~~~~~~~~~~~~~~i~~~~~l~g~i~~~~~~~~~~~~~-~~~~~~~~~~~~~ll~~g---t~v~~~l~~~a~  268 (332)
                      ++||.+.++.|+..++. |+...+++.+..+++ +.+.....+... ..++   ...+...++.|   +.+++.++++++
T Consensus         1 ~~~a~~~~~~k~~~~~~-~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~a~   75 (126)
T PF00892_consen    1 FSWAIYSVFSKKLLKKI-SPLSITFWRFLIAGI-LLILLLILGRKPFKNLS---PRQWLWLLFLGLLGTALAYLLYFYAL   75 (126)
T ss_pred             ceeeeHHHHHHHHhccC-CHHHHHHHHHHHHHH-HHHHHHhhccccccCCC---hhhhhhhhHhhccceehHHHHHHHHH
Confidence            47899999999998887 489999999999998 666665554321 1121   12344444444   689999999999


Q ss_pred             hcc-h--hhhhcchHHHHHHHHHHHHhCCCccc
Q 020034          269 HMV-P--VENWTSLCINVQALGHCLLYCHGCRH  298 (332)
Q Consensus       269 ~~~-~--~s~~~~l~pv~~~i~~~l~lgE~~~~  298 (332)
                      ++. +  ++++.+++|+++.++++++++|+++.
T Consensus        76 ~~~~~~~~~~~~~~~pv~~~i~~~~~~~e~~~~  108 (126)
T PF00892_consen   76 KYISASIVSILQYLSPVFAAILGWLFLGERPSW  108 (126)
T ss_pred             HhcchhHHHHHHHHHHHHHHHHHHHHcCCCCCH
Confidence            999 5  99999999999999999999999974

Many members of this family are classed as drug/metabolite transporters and have no known function. They are predicted to be integral membrane proteins and many of the proteins contain two copies of this domain [].; GO: 0016020 membrane

>TIGR00817 tpt Tpt phosphate/phosphoenolpyruvate translocator

Probab=98.65  E-value=1.3e-07  Score=88.62  Aligned_cols=138  Identities=17%  Similarity=0.141  Sum_probs=104.9

Q ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHHHhc-CCChHHHHHHHHHHHHHHHHHHHHHhhcCCCCC---------CCHHHHHH-
Q 020034           10 AALPSVGMVIVLLAQVSNMEVIKAAMSK-GINKYVIIVYSDALSSLFFLFCSFLFHRSERPQ---------LTFSILCS-   78 (332)
Q Consensus        10 ~~~~~l~ll~~~~~wg~~~~~~K~~l~~-~~~p~~~~~~R~~~a~i~ll~~~~~~~r~~~~~---------~~~~~~~~-   78 (332)
                      ...+.++.++++++|+...+..|...++ +.||..+..+....+.+.++|+....+......         ........ 
T Consensus       143 ~~~G~~~~l~a~~~~a~~~v~~k~~~~~~~~~~~~~~~~~~~~~~~~l~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  222 (302)
T TIGR00817       143 NWAGFLSAMISNITFVSRNIFSKKAMTIKSLDKTNLYAYISIMSLFLLSPPAFITEGPPFLPHGFMQAISGVNVTKIYTV  222 (302)
T ss_pred             cHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCcccHHHHHHHHHHHHHHHHHHHHcchHHHHHHHHHhhcccCchHHHHH
Confidence            3558889999999999999999987651 489999999999999999999876542111000         01111111 


Q ss_pred             HHHHHHHH-HHHHHHHHHHhhccChhhHhHhhcchhHHHHHHHHHHHhhcccccccccccchhhhhhhhhchhhee
Q 020034           79 FFLLSVFG-CSSQIFSFVGIQYSSPTLSTAMLNLIPAFTFVLAIIFRLEKLNWENKSSQAKSLGTFASIGGAFVVT  153 (332)
Q Consensus        79 l~~~g~~g-~~~~~l~~~gl~~~sa~~A~~i~~~~P~~~~lls~l~~~Ek~~~~~~~s~~~~~gi~l~l~Gv~ll~  153 (332)
                      .+..++.. ...+.+++.++++++|..+++..++.|++++++++++++|+++.++      ++|.++.+.|+.+..
T Consensus       223 ~~~~~~~~~~~~~~~~~~~l~~~sa~t~sv~~~l~pv~~~~~~~~~lge~lt~~~------~~G~~lil~Gv~l~~  292 (302)
T TIGR00817       223 SLVAAMGFFHFYQQVAFMLLGRVSPLTHSVGNCMKRVVVIVVSILFFGTKISPQQ------VFGTGIAIAGVFLYS  292 (302)
T ss_pred             HHHHHHHHHHHHHHHHHHHHccCCchHHHHHhhhhhhheeeeehhhcCCCCchhH------HHHHHHHHHHHHHHH
Confidence            22333322 3444677889999999999999999999999999999999998865      999999999998754

specificities overlap.

>KOG2766 consensus Predicted membrane protein [Function unknown]

Probab=98.54  E-value=1.2e-07  Score=84.63  Aligned_cols=170  Identities=17%  Similarity=0.162  Sum_probs=125.3

Q ss_pred             ChHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhhccChhhHhHhhcchhHHHHHH
Q 020034           40 NKYVIIVYSDALSSLFFLFCSFLFHRSERPQLTFSILCSFFLLSVFGCSSQIFSFVGIQYSSPTLSTAMLNLIPAFTFVL  119 (332)
Q Consensus        40 ~p~~~~~~R~~~a~i~ll~~~~~~~r~~~~~~~~~~~~~l~~~g~~g~~~~~l~~~gl~~~sa~~A~~i~~~~P~~~~ll  119 (332)
                      .|..=.++-+.+-+++-.|+..+ +|+.   . +-.|...++.|+...-.+++...+.|||+-+.+.++-.-.-..+.++
T Consensus        47 ~Pt~QtFl~Y~LLalVY~~~~~f-R~~~---~-~~~~~hYilla~~DVEaNy~vV~AyQyTsmtSi~lLDcwaip~v~~l  121 (336)
T KOG2766|consen   47 APTSQTFLNYVLLALVYGPIMLF-RRKY---I-KAKWRHYILLAFVDVEANYFVVKAYQYTSMTSIMLLDCWAIPCVLVL  121 (336)
T ss_pred             CccHHHHHHHHHHHHHHhhHHHh-hhHH---H-HHHHHHhhheeEEeecccEEEeeehhhcchHHHHHHHHhhhHHHHHH
Confidence            36666777777777777777655 2321   1 12233456677777556677788999999988888876666667889


Q ss_pred             HHHHHhhcccccccccccchhhhhhhhhchhheeeccCCCCcCCCCCCCCCccccCCCCCcchhHHHHHHHHHHHHHHHH
Q 020034          120 AIIFRLEKLNWENKSSQAKSLGTFASIGGAFVVTFYKGPPLIGELSHSGSPRRLLLSPQLSWILGGFFLAAEAFMNSAWF  199 (332)
Q Consensus       120 s~l~~~Ek~~~~~~~s~~~~~gi~l~l~Gv~ll~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~G~~l~L~aa~~~A~~~  199 (332)
                      +|+++|.|-++      .|+.|+++|+.|++.+++.+-.. +            +..++.+...||.+.++.|.+||..+
T Consensus       122 sw~fLktrYrl------mki~gV~iCi~GvvmvV~sDV~a-g------------d~aggsnp~~GD~lvi~GATlYaVSN  182 (336)
T KOG2766|consen  122 SWFFLKTRYRL------MKISGVVICIVGVVMVVFSDVHA-G------------DRAGGSNPVKGDFLVIAGATLYAVSN  182 (336)
T ss_pred             HHHHHHHHHhh------heeeeEEeEecceEEEEEeeecc-c------------cccCCCCCccCcEEEEecceeeeecc
Confidence            99999998765      46999999999999888542110 0            12335566889999999999999999


Q ss_pred             HHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHc
Q 020034          200 ILQALILRKFAAVLIIMFYLFFFNTILSTAFALIVV  235 (332)
Q Consensus       200 v~~~~~~~~~~~~~~i~~~~~l~g~i~~~~~~~~~~  235 (332)
                      +....+.|+.+ ...+.....++|++.+.+= ++.+
T Consensus       183 v~EEflvkn~d-~~elm~~lgLfGaIIsaIQ-~i~~  216 (336)
T KOG2766|consen  183 VSEEFLVKNAD-RVELMGFLGLFGAIISAIQ-FIFE  216 (336)
T ss_pred             ccHHHHHhcCc-HHHHHHHHHHHHHHHHHHH-Hhhh
Confidence            99888888874 7778888889999998776 4444

>PF03151 TPT: Triose-phosphate Transporter family; InterPro: IPR004853 This family consists entirely of aligned regions from Drosophila melanogaster proteins

Probab=98.52  E-value=2.5e-06  Score=71.41  Aligned_cols=133  Identities=18%  Similarity=0.249  Sum_probs=109.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhc------CCChHHHHHHHHHHHHHHHHHHHHHhhcCCC-C------C--C--CHHH
Q 020034           13 PSVGMVIVLLAQVSNMEVIKAAMSK------GINKYVIIVYSDALSSLFFLFCSFLFHRSER-P------Q--L--TFSI   75 (332)
Q Consensus        13 ~~l~ll~~~~~wg~~~~~~K~~l~~------~~~p~~~~~~R~~~a~i~ll~~~~~~~r~~~-~------~--~--~~~~   75 (332)
                      +..+.+.+.++.+...+..|..++.      ..+|.++..+-...+.++++|.+...++... +      +  .  ..+.
T Consensus         1 G~~~~l~s~~~~al~~v~~~~~~~~~~~~~~~~~~~~l~~~~~~~s~~~l~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~   80 (153)
T PF03151_consen    1 GFILALASSLFSALRNVLIKKLLKKVSSNSKKLNPLNLLYYNSPISFIILLPLAFLLEGPQLSSFFSEIFGEELSSDPNF   80 (153)
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHHhcccccccCCCHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHhhhhhhcchHHH
Confidence            3567788999999999999988765      6899999999999999999998877653321 0      0  0  1244


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhhccChhhHhHhhcchhHHHHHHHHHHHhhcccccccccccchhhhhhhhhchhh
Q 020034           76 LCSFFLLSVFGCSSQIFSFVGIQYSSPTLSTAMLNLIPAFTFVLAIIFRLEKLNWENKSSQAKSLGTFASIGGAFV  151 (332)
Q Consensus        76 ~~~l~~~g~~g~~~~~l~~~gl~~~sa~~A~~i~~~~P~~~~lls~l~~~Ek~~~~~~~s~~~~~gi~l~l~Gv~l  151 (332)
                      +..++..|+++...+...+..++++||...++....-.+.+.++++++++|+++.+      +++|+.+++.|.++
T Consensus        81 ~~~~~~~~~~~~~~n~~~f~~i~~tS~lt~~v~~~~K~~~~i~~s~~~f~~~~t~~------~~~G~~l~~~G~~~  150 (153)
T PF03151_consen   81 IFLLILSGLLAFLYNLSSFLLIKLTSPLTYSVLGNVKRILVILLSVIFFGEPITPL------QIIGIVLALVGVLL  150 (153)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhhhcChhHHHHHHHHHHHHHHHHHhhhcCCcCCHH------HHHHHHHHHHHHhe
Confidence            55566666777888899999999999999999999999999999999999999875      49999999999865

O49724 from SWISSPROT contains three repeats of this region. In other proteins, the aligned region is located towards the C terminus. The function of the aligned region is unknown.

>PTZ00343 triose or hexose phosphate/phosphate translocator; Provisional

Probab=98.44  E-value=4.8e-06  Score=79.83  Aligned_cols=137  Identities=17%  Similarity=0.124  Sum_probs=101.5

Q ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHHHhc------CCChHHHHHHHHHHHHHHHHHHHHHhhcCC-C----------CCCC
Q 020034           10 AALPSVGMVIVLLAQVSNMEVIKAAMSK------GINKYVIIVYSDALSSLFFLFCSFLFHRSE-R----------PQLT   72 (332)
Q Consensus        10 ~~~~~l~ll~~~~~wg~~~~~~K~~l~~------~~~p~~~~~~R~~~a~i~ll~~~~~~~r~~-~----------~~~~   72 (332)
                      .+.+.++.++++++|+...+..|..++.      ..++.....+-..+++++++|+....+... .          ....
T Consensus       192 ~~~G~~~~l~s~~~~a~~~i~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lp~~~~~e~~~~~~~~~~~~~~~~~~~  271 (350)
T PTZ00343        192 TWLAFWCAMLSNLGSSLRSIFAKKTMKNKSEIGENLTASNIYMLLTLIASLISLPLVLFFEGKKWVPVWTNYTANMTNYT  271 (350)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccCCHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhhhcccccc
Confidence            3568899999999999999999997753      256777777778899999999876432110 0          0111


Q ss_pred             HHHHHH-HHHHHHHHHHHHHHHHHHhhccChhhHhHhhcchhHHHHHHHHHHHhhcccccccccccchhhhhhhhhchhh
Q 020034           73 FSILCS-FFLLSVFGCSSQIFSFVGIQYSSPTLSTAMLNLIPAFTFVLAIIFRLEKLNWENKSSQAKSLGTFASIGGAFV  151 (332)
Q Consensus        73 ~~~~~~-l~~~g~~g~~~~~l~~~gl~~~sa~~A~~i~~~~P~~~~lls~l~~~Ek~~~~~~~s~~~~~gi~l~l~Gv~l  151 (332)
                      ...... ++..++...+.+.+.|++++++++..+++..++-|+++.++++++++|+++..      +++|.++.+.|+++
T Consensus       272 ~~~~l~~i~~s~l~~~l~n~~~f~~l~~~s~~t~sv~~~lk~V~~iv~s~l~~ge~lt~~------~~iG~~lii~Gv~l  345 (350)
T PTZ00343        272 KGIIIFKIFFSGVWYYLYNEVAFYCLGKVNQVTHAVANTLKRVVIIVSSIIIFQTQVTLL------GYLGMAVAILGALL  345 (350)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHhhhhHHHhCCCCchH------hHHHHHHHHHHHHH
Confidence            111111 22222223555556667999999999999999999999999999999999875      49999999999976


Q ss_pred             e
Q 020034          152 V  152 (332)
Q Consensus       152 l  152 (332)
                      .
T Consensus       346 Y  346 (350)
T PTZ00343        346 Y  346 (350)
T ss_pred             H
Confidence            4

>TIGR00776 RhaT RhaT L-rhamnose-proton symporter family protein

Probab=98.35  E-value=5.3e-06  Score=77.48  Aligned_cols=134  Identities=14%  Similarity=0.091  Sum_probs=100.5

Q ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHH---HHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHHH
Q 020034           10 AALPSVGMVIVLLAQVSNMEVIKAAMSKGINKYVIIVYSD---ALSSLFFLFCSFLFHRSERPQLTFSILCSFFLLSVFG   86 (332)
Q Consensus        10 ~~~~~l~ll~~~~~wg~~~~~~K~~l~~~~~p~~~~~~R~---~~a~i~ll~~~~~~~r~~~~~~~~~~~~~l~~~g~~g   86 (332)
                      ..|+..+.+++.+.++.+....|..   +.||....+...   .+++.++.+..    ++.+|. +.+.....++.|++-
T Consensus       150 ~~~Gi~~~l~sg~~y~~~~~~~~~~---~~~~~~~~~~~~~g~~~~~~~~~~~~----~~~~~~-~~~~~~~~~~~Gi~~  221 (290)
T TIGR00776       150 FKKGILLLLMSTIGYLVYVVVAKAF---GVDGLSVLLPQAIGMVIGGIIFNLGH----ILAKPL-KKYAILLNILPGLMW  221 (290)
T ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHc---CCCcceehhHHHHHHHHHHHHHHHHH----hcccch-HHHHHHHHHHHHHHH
Confidence            3679999999999999999999964   378988854444   44555444432    112222 233444455577776


Q ss_pred             HHHHHHHHHHhh-ccChhhHhHhhcchhHHHHHHHHHHHhhcccccccccccchhhhhhhhhchhhee
Q 020034           87 CSSQIFSFVGIQ-YSSPTLSTAMLNLIPAFTFVLAIIFRLEKLNWENKSSQAKSLGTFASIGGAFVVT  153 (332)
Q Consensus        87 ~~~~~l~~~gl~-~~sa~~A~~i~~~~P~~~~lls~l~~~Ek~~~~~~~s~~~~~gi~l~l~Gv~ll~  153 (332)
                      ...+.+|+.+.+ +.+++.++.+.+..|+...+.+++++||+.++|++  +.-.+|.++.+.|+.++.
T Consensus       222 ~ia~~~y~~~~~~~~~~~~~~~ls~~~pvia~~~~v~~l~E~~~~~~~--~~~~iG~~lIi~~~~l~~  287 (290)
T TIGR00776       222 GIGNFFYLFSAQPKVGVATSFSLSQLGVIISTLGGILILGEKKTKREM--IAISVGIILIIIAANILG  287 (290)
T ss_pred             HHHHHHHHHHcccccchhhHHHHHHHHHHHHHHHHHHHhccCCCccee--ehhHHHHHHHHHHHHHHh
Confidence            778889999999 99999999999999999999999999999988762  112389999999987754

These proteins are members of the L-Rhamnose Symporter (RhaT) Family (TC 2.A.7). This family includes two characterized members, both of which function as L-rhamnose:H+ symporters and have 10 GES predicted transmembrane domains.

>COG0697 RhaT Permeases of the drug/metabolite transporter (DMT) superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / General function prediction only]

Probab=98.34  E-value=1.2e-05  Score=73.76  Aligned_cols=132  Identities=14%  Similarity=0.169  Sum_probs=102.8

Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHH-HHHHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHHH-HH
Q 020034           11 ALPSVGMVIVLLAQVSNMEVIKAAMSKGINKYVIIV-YSDALSSLFFLFCSFLFHRSERPQLTFSILCSFFLLSVFG-CS   88 (332)
Q Consensus        11 ~~~~l~ll~~~~~wg~~~~~~K~~l~~~~~p~~~~~-~R~~~a~i~ll~~~~~~~r~~~~~~~~~~~~~l~~~g~~g-~~   88 (332)
                      ..+.+..+.+.+.|+...+..|...  ..++..... +.+..+.....+..  ..... .....+.+..+...|+++ ..
T Consensus       153 ~~g~~~~l~a~~~~a~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~-~~~~~~~~~~~~~~g~~~~~i  227 (292)
T COG0697         153 LLGLLLALAAALLWALYTALVKRLS--RLGPVTLALLLQLLLALLLLLLFF--LSGFG-APILSRAWLLLLYLGVFSTGL  227 (292)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhc--CCChHHHHHHHHHHHHHHHHHHHH--hcccc-ccCCHHHHHHHHHHHHHHHHH
Confidence            5788999999999999999999765  367777776 44442233332322  11111 234566788888899998 67


Q ss_pred             HHHHHHHHhhccChhhHhHhhcchhHHHHHHHHHHHhhcccccccccccchhhhhhhhhchhhee
Q 020034           89 SQIFSFVGIQYSSPTLSTAMLNLIPAFTFVLAIIFRLEKLNWENKSSQAKSLGTFASIGGAFVVT  153 (332)
Q Consensus        89 ~~~l~~~gl~~~sa~~A~~i~~~~P~~~~lls~l~~~Ek~~~~~~~s~~~~~gi~l~l~Gv~ll~  153 (332)
                      .+.++++++++.+++.++.+.++.|++..+.++++++|+++.++      ++|..+.+.|+.+..
T Consensus       228 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~l~~~e~~~~~~------~~G~~li~~g~~l~~  286 (292)
T COG0697         228 AYLLWYYALRLLGASLVALLSLLEPVFAALLGVLLLGEPLSPAQ------LLGAALVVLGVLLAS  286 (292)
T ss_pred             HHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHhCCCCcHHH------HHHHHHHHHHHHHHh
Confidence            99999999999999999999999999999999999999998764      899999999987754

>KOG1444 consensus Nucleotide-sugar transporter VRG4/SQV-7 [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]

Probab=98.28  E-value=0.0002  Score=66.42  Aligned_cols=256  Identities=15%  Similarity=0.087  Sum_probs=160.4

Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHH--HHHHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHHHHH
Q 020034           11 ALPSVGMVIVLLAQVSNMEVIKAAMSKGINKYVIIV--YSDALSSLFFLFCSFLFHRSERPQLTFSILCSFFLLSVFGCS   88 (332)
Q Consensus        11 ~~~~l~ll~~~~~wg~~~~~~K~~l~~~~~p~~~~~--~R~~~a~i~ll~~~~~~~r~~~~~~~~~~~~~l~~~g~~g~~   88 (332)
                      .++.+..+.-.+.-..+.++-|.++.+.=-|..+..  ++.+...+.+...-.. +--+.++++++..++.+-..++..+
T Consensus        11 ~~~l~sa~~Y~~sS~lm~vvNK~vls~y~f~~~l~l~~~Q~l~s~~~v~~lk~~-~lv~~~~l~~~~~kk~~P~~~lf~~   89 (314)
T KOG1444|consen   11 SSPLLSALFYCLSSILMTVVNKIVLSSYNFPMGLLLMLLQSLASVLVVLVLKRL-GLVNFRPLDLRTAKKWFPVSLLFVG   89 (314)
T ss_pred             hhhhHHHHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHh-ceeecCCcChHHHHHHccHHHHHHH
Confidence            334444444444444556667888875323444444  8888777766654322 1111245667777777777777777


Q ss_pred             HHHHHHHHhhccChhhHhHhhcchhHHHHHHHHHHHhhcccccccccccchhhhhhhhhchhheeeccCCCCcCCCCCCC
Q 020034           89 SQIFSFVGIQYSSPTLSTAMLNLIPAFTFVLAIIFRLEKLNWENKSSQAKSLGTFASIGGAFVVTFYKGPPLIGELSHSG  168 (332)
Q Consensus        89 ~~~l~~~gl~~~sa~~A~~i~~~~P~~~~lls~l~~~Ek~~~~~~~s~~~~~gi~l~l~Gv~ll~~~~g~~~~~~~~~~~  168 (332)
                      +.+.-..+++|.+...-+++-...|+++++...+++|-|.+      +.-+.++....+|.......   +         
T Consensus        90 ~i~t~~~slk~lnVpm~tv~kn~tii~~ai~E~lf~~~~~~------~~v~~Sv~~m~~~s~~~~~~---d---------  151 (314)
T KOG1444|consen   90 MLFTGSKSLKYLNVPMFTVFKNLTIILTAIGEVLFFGKRPS------NKVWASVFAMIIGSVAAAFT---D---------  151 (314)
T ss_pred             HHHHccccccccCchHHHHHhhchHHHHHHhHHhhcCcCch------hhHHHHHHHHHHHHHhhccc---c---------
Confidence            77777889999999999999999999999999999885544      44588888888888765421   1         


Q ss_pred             CCccccCCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHhcc-hHHHHHHHHHHHHHHHHHHHHHHHcCC------CCCc
Q 020034          169 SPRRLLLSPQLSWILGGFFLAAEAFMNSAWFILQALILRKFA-AVLIIMFYLFFFNTILSTAFALIVVSE------PSDW  241 (332)
Q Consensus       169 ~~~~~~~~~~~~~~~G~~l~L~aa~~~A~~~v~~~~~~~~~~-~~~~i~~~~~l~g~i~~~~~~~~~~~~------~~~~  241 (332)
                              ...+ ..|-.+.+...++-+.+.+..|+..+... ....+.++-.+.....+....+++++.      .+.|
T Consensus       152 --------~sf~-~~gY~w~~~n~~~~a~~~v~~kk~vd~~~l~~~~lv~yNnl~~L~~l~~~~~~~ge~~~l~~~~~~~  222 (314)
T KOG1444|consen  152 --------LSFN-LRGYSWALANCLTTAAFVVYVKKSVDSANLNKFGLVFYNNLLSLPPLLILSFITGELDALSLNFDNW  222 (314)
T ss_pred             --------ceec-chhHHHHHHHHHHHHHHHHHHHHhhccccccceeEEeehhHHHHHHHHHHHHHhcchHHHHhhcccc
Confidence                    1112 34889999999999999999888654421 234566788888888887777776531      1112


Q ss_pred             cccchhhhHHHHhhh---hhhHHHHHHHHhhcc-h--hhhhcchHHHHHHHHHHHHhCCCcc
Q 020034          242 KLGLDIGLVAVLYSV---SSYWHWVSSWLVHMV-P--VENWTSLCINVQALGHCLLYCHGCR  297 (332)
Q Consensus       242 ~~~~~~~~~~ll~~g---t~v~~~l~~~a~~~~-~--~s~~~~l~pv~~~i~~~l~lgE~~~  297 (332)
                      ..  ...+..+...+   -++.|. -.++.+.. +  .++.....-..+.+...++.|++.+
T Consensus       223 ~~--~~~~~~~~lScv~gf~isy~-s~~ct~~~SAtT~tivG~~n~l~t~l~~ll~~d~~~~  281 (314)
T KOG1444|consen  223 SD--SSVLVVMLLSCVMGFGISYT-SFLCTRVNSATTTTIVGAKNKLLTYLGGLLFGDKPFT  281 (314)
T ss_pred             cc--hhHHHHHHHHHHHHHHHHHH-HHHHHhhccccceeehhhhhhHHHHHHHHhcCCceec
Confidence            21  11233333332   223332 23555555 4  4444433444455556666666665

>PRK15430 putative chloramphenical resistance permease RarD; Provisional

Probab=98.27  E-value=1.1e-05  Score=75.33  Aligned_cols=130  Identities=10%  Similarity=0.014  Sum_probs=87.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhcC-CChHHHHHHHHHHHHHHHHHHHHHhhcCCC--CCCCHHHHHHHHHHHHHHHHHHH
Q 020034           15 VGMVIVLLAQVSNMEVIKAAMSKG-INKYVIIVYSDALSSLFFLFCSFLFHRSER--PQLTFSILCSFFLLSVFGCSSQI   91 (332)
Q Consensus        15 l~ll~~~~~wg~~~~~~K~~l~~~-~~p~~~~~~R~~~a~i~ll~~~~~~~r~~~--~~~~~~~~~~l~~~g~~g~~~~~   91 (332)
                      ...+.++++|+.+.+..|...+++ .++.....+-..++.+.+++..   .....  ...+...+..+...|+...+.+.
T Consensus       152 ~~~l~aa~~~a~~~i~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~g~~t~i~~~  228 (296)
T PRK15430        152 IIALGLAFSFAFYGLVRKKIAVEAQTGMLIETMWLLPVAAIYLFAIA---DSSTSHMGQNPMSLNLLLIAAGIVTTVPLL  228 (296)
T ss_pred             HHHHHHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHHHHHHHHHHc---cCCcccccCCcHHHHHHHHHHHHHHHHHHH
Confidence            356778899999999998753221 1223333333334433332221   11110  11122223344445554578899


Q ss_pred             HHHHHhhccChhhHhHhhcchhHHHHHHHHHHHhhcccccccccccchhhhhhhhhchhhee
Q 020034           92 FSFVGIQYSSPTLSTAMLNLIPAFTFVLAIIFRLEKLNWENKSSQAKSLGTFASIGGAFVVT  153 (332)
Q Consensus        92 l~~~gl~~~sa~~A~~i~~~~P~~~~lls~l~~~Ek~~~~~~~s~~~~~gi~l~l~Gv~ll~  153 (332)
                      +++.++++.+++.++.+.++.|++..++++++++|+++..      +++|.++.+.|+.++.
T Consensus       229 ~~~~a~~~~~a~~~s~~~~l~Pv~a~~~g~l~l~E~~~~~------~~~G~~lI~~~~~v~~  284 (296)
T PRK15430        229 CFTAAATRLRLSTLGFFQYIGPTLMFLLAVTFYGEKPGAD------KMVTFAFIWVALAIFV  284 (296)
T ss_pred             HHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHcCCCCHH------HHHHHHHHHHHHHHHH
Confidence            9999999999999999999999999999999999999875      4899999988887765

>PRK15051 4-amino-4-deoxy-L-arabinose-phosphoundecaprenol flippase subunit ArnE; Provisional

Probab=98.25  E-value=3e-06  Score=67.72  Aligned_cols=67  Identities=16%  Similarity=0.141  Sum_probs=59.9

Q ss_pred             HHHHHH-HHHHHHHHHHhhccChhhHhHhhcchhHHHHHHHHHHHhhcccccccccccchhhhhhhhhchhhee
Q 020034           81 LLSVFG-CSSQIFSFVGIQYSSPTLSTAMLNLIPAFTFVLAIIFRLEKLNWENKSSQAKSLGTFASIGGAFVVT  153 (332)
Q Consensus        81 ~~g~~g-~~~~~l~~~gl~~~sa~~A~~i~~~~P~~~~lls~l~~~Ek~~~~~~~s~~~~~gi~l~l~Gv~ll~  153 (332)
                      ..++++ ..++.++..++++.|.+.|-.+.++.|+++++.+++++|||++++|      ++|+.+.++|++++.
T Consensus        41 ~~~~~~~~l~~~~~~~al~~iplg~Ay~~~~l~~v~~~~~~~l~f~E~ls~~~------~~Gi~lii~Gv~~i~  108 (111)
T PRK15051         41 GLALACLGLAMVLWLLVLQNVPVGIAYPMLSLNFVWVTLAAVKLWHEPVSPRH------WCGVAFIIGGIVILG  108 (111)
T ss_pred             HHHHHHHHHHHHHHHHHHhhCChHHHHHHHHHHHHHHHHHHHHHhCCCCCHHH------HHHHHHHHHHHHHHh
Confidence            344466 7889999999999999999999999999999999999999998865      999999999998764

>PF06800 Sugar_transport: Sugar transport protein; InterPro: IPR010651 This is a family of bacterial sugar transporters approximately 300 residues long

Probab=98.18  E-value=0.00017  Score=66.08  Aligned_cols=201  Identities=12%  Similarity=0.008  Sum_probs=127.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhccChhhHhHhhc-chhHHHHHHHHHHHhhcccccccccccchhhhhhhhhchhhe
Q 020034           74 SILCSFFLLSVFGCSSQIFSFVGIQYSSPTLSTAMLN-LIPAFTFVLAIIFRLEKLNWENKSSQAKSLGTFASIGGAFVV  152 (332)
Q Consensus        74 ~~~~~l~~~g~~g~~~~~l~~~gl~~~sa~~A~~i~~-~~P~~~~lls~l~~~Ek~~~~~~~s~~~~~gi~l~l~Gv~ll  152 (332)
                      +.+..-++.|++=.+.|..++.++++.+.+.+-=+.. ++=+.+.+.+.++++|.-+.+++  ..-.+++++.++|+.+-
T Consensus        43 ~~~~~~~lsG~~W~iGq~~qf~s~~~~GVS~tmPiStg~QLvg~sl~gv~~fgEW~~~~~~--~~G~~Al~liiiGv~lt  120 (269)
T PF06800_consen   43 TSFIVAFLSGAFWAIGQIGQFKSFKKIGVSKTMPISTGLQLVGTSLIGVLFFGEWTTTTQK--IIGFLALVLIIIGVILT  120 (269)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhcceeeeccchhHHHHHHHHHHHhhcCCCCCcchH--HHHHHHHHHHHHHHHHh
Confidence            6677777777777888999999999988887755543 44456788899999998765543  13456778888898776


Q ss_pred             eeccCCCCcCCCCCCCCCccccCCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHH
Q 020034          153 TFYKGPPLIGELSHSGSPRRLLLSPQLSWILGGFFLAAEAFMNSAWFILQALILRKFAAVLIIMFYLFFFNTILSTAFAL  232 (332)
Q Consensus       153 ~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~G~~l~L~aa~~~A~~~v~~~~~~~~~~~~~~i~~~~~l~g~i~~~~~~~  232 (332)
                      ...++++.             ..+...+...|...++.+.+.|..|.++.|-  .+. ++..+..=|++.-.+....+..
T Consensus       121 s~~~~~~~-------------~~~~~~~~~kgi~~Ll~stigy~~Y~~~~~~--~~~-~~~~~~lPqaiGm~i~a~i~~~  184 (269)
T PF06800_consen  121 SYQDKKSD-------------KSSSKSNMKKGILALLISTIGYWIYSVIPKA--FHV-SGWSAFLPQAIGMLIGAFIFNL  184 (269)
T ss_pred             cccccccc-------------ccccccchhhHHHHHHHHHHHHHHHHHHHHh--cCC-ChhHhHHHHHHHHHHHHHHHhh
Confidence            53222110             0011234567999999999999999998664  344 4666655554322222223333


Q ss_pred             HHcCCCCCccccchhhhHHHHhhhhhhHHHHHHHHhhcc-h--hhhhcchHHHHHHHHHHHHhCCCc
Q 020034          233 IVVSEPSDWKLGLDIGLVAVLYSVSSYWHWVSSWLVHMV-P--VENWTSLCINVQALGHCLLYCHGC  296 (332)
Q Consensus       233 ~~~~~~~~~~~~~~~~~~~ll~~gt~v~~~l~~~a~~~~-~--~s~~~~l~pv~~~i~~~l~lgE~~  296 (332)
                      +.+++..+ ...+..-+..+++   .++-.+|..+.++. .  .=.++-+..+++++.|.++++|.=
T Consensus       185 ~~~~~~~~-k~~~~nil~G~~w---~ignl~~~is~~~~G~a~af~lSQ~~vvIStlgGI~il~E~K  247 (269)
T PF06800_consen  185 FSKKPFFE-KKSWKNILTGLIW---GIGNLFYLISAQKNGVATAFTLSQLGVVISTLGGIFILKEKK  247 (269)
T ss_pred             cccccccc-cchHHhhHHHHHH---HHHHHHHHHhHHhccchhhhhHHhHHHHHHHhhhheEEEecC
Confidence            22221111 1111111223333   35566677778777 4  446667779999999999999973

Members include glucose uptake proteins [], ribose transport proteins, and several putative and hypothetical membrane proteins probably involved in sugar transport across bacterial membranes.; GO: 0015144 carbohydrate transmembrane transporter activity, 0034219 carbohydrate transmembrane transport, 0016021 integral to membrane

>KOG1443 consensus Predicted integral membrane protein [Function unknown]

Probab=98.17  E-value=0.00024  Score=65.39  Aligned_cols=232  Identities=17%  Similarity=0.171  Sum_probs=139.8

Q ss_pred             ChHHHHHHHHHHHHHHHHHHHHHhhcCC---CCCCCHHHHH-HHHHHHHHHHHHHHHHHHHhhccChhhHhHhhcchhHH
Q 020034           40 NKYVIIVYSDALSSLFFLFCSFLFHRSE---RPQLTFSILC-SFFLLSVFGCSSQIFSFVGIQYSSPTLSTAMLNLIPAF  115 (332)
Q Consensus        40 ~p~~~~~~R~~~a~i~ll~~~~~~~r~~---~~~~~~~~~~-~l~~~g~~g~~~~~l~~~gl~~~sa~~A~~i~~~~P~~  115 (332)
                      -|+.++.+..+.=.++-......++++.   |.+.+|++.. ++...|+..+....+..++++|++.+.=+..-..+++|
T Consensus        44 fPLf~ts~h~~v~flfa~~~~~l~~~~~~r~r~~~sw~~~Lr~~aPtalata~DIGLSN~sl~yVtlSlYTM~KSSsi~F  123 (349)
T KOG1443|consen   44 FPLFVTSLHLAVKFLFAALSRRLYQCSVPRARVVLSWRDYLRRLAPTALATALDIGLSNWSLEYVTLSLYTMTKSSSILF  123 (349)
T ss_pred             CchHHHHHHHHHHHHHHHHHHHHHhccCCccccCCcHHHHHHHhhhhhhhhhcccccccceeeeeeeeeeeeccccHHHH
Confidence            4777776665444333322222222211   2245666544 46677777788889999999999999988888999999


Q ss_pred             HHHHHHHHHhhcccccccccccchhhhhhhhhchhheeeccCCCCcCCCCCCCCCccccCCCCCcchhHHHHHHHHHHHH
Q 020034          116 TFVLAIIFRLEKLNWENKSSQAKSLGTFASIGGAFVVTFYKGPPLIGELSHSGSPRRLLLSPQLSWILGGFFLAAEAFMN  195 (332)
Q Consensus       116 ~~lls~l~~~Ek~~~~~~~s~~~~~gi~l~l~Gv~ll~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~G~~l~L~aa~~~  195 (332)
                      +.+++.+|.-||.+++-      ..-+.+...|++++. +|..                   +.+ ..|..+.++|+++-
T Consensus       124 IllFs~if~lEk~~w~L------~l~v~lI~~Glflft-~KsT-------------------qf~-i~Gf~lv~~aS~~s  176 (349)
T KOG1443|consen  124 ILLFSLIFKLEKFRWAL------VLIVLLIAVGLFLFT-YKST-------------------QFN-IEGFFLVLAASLLS  176 (349)
T ss_pred             HHHHHHHHHhHHHHHHH------HHHHHHHhhheeEEE-eccc-------------------cee-ehhHHHHHHHHHhh
Confidence            99999999999988742      233333444444443 4432                   122 46888888777766


Q ss_pred             HHHHHHHHHHHHhcc----hHHHHHHHHHHHHHHHHHHHHHHHcCCC-----CCcccc-chhhhHHH--HhhhhhhHHHH
Q 020034          196 SAWFILQALILRKFA----AVLIIMFYLFFFNTILSTAFALIVVSEP-----SDWKLG-LDIGLVAV--LYSVSSYWHWV  263 (332)
Q Consensus       196 A~~~v~~~~~~~~~~----~~~~i~~~~~l~g~i~~~~~~~~~~~~~-----~~~~~~-~~~~~~~l--l~~gt~v~~~l  263 (332)
                      .+-=.+....+++.+    .|........-.-.+.++|..+.+|++.     +.|... +...+..+  +.+|+..++.+
T Consensus       177 GlRW~~tQ~ll~~~~~~~~~P~~ti~~l~p~M~~~Ll~~~l~fEG~~~~~~s~~f~~~d~~~~~rv~g~i~l~g~laF~l  256 (349)
T KOG1443|consen  177 GLRWAFTQMLLRNQPSAKRNPIDTIFHLQPWMSIGLLPLSLLFEGLHLITSSSIFRFQDTGLILRVIGLISLGGLLAFLL  256 (349)
T ss_pred             hhhHHHHHHHHhcCccccCCCeeeHHHhhhHHHHHHHHHHHHHcccccchhhhHHHhcCccHHHHHHHHHHHHHHHHHHH
Confidence            554444444555532    4566666555566667777777777642     122211 11122222  22334555544


Q ss_pred             HH--HHh-hcch---hhhhcchHHHHHHHHHHHHhCCCccc
Q 020034          264 SS--WLV-HMVP---VENWTSLCINVQALGHCLLYCHGCRH  298 (332)
Q Consensus       264 ~~--~a~-~~~~---~s~~~~l~pv~~~i~~~l~lgE~~~~  298 (332)
                      -.  ..+ .+.+   .++..-.--+.+.++|.++.+|+++.
T Consensus       257 ~~sEflLl~~Ts~ltlSIaGI~Kel~tl~la~ii~~d~ls~  297 (349)
T KOG1443|consen  257 EFSEFLLLSRTSSLTLSIAGIVKEVCTLLLAIIILKDQLSL  297 (349)
T ss_pred             HHHHHheeeeccceeeeHHHHHHHHHHHHHHHHHhhcchhh
Confidence            22  222 2223   55666666778889999999999974

>KOG1580 consensus UDP-galactose transporter related protein [Carbohydrate transport and metabolism]

Probab=97.94  E-value=0.00016  Score=64.16  Aligned_cols=198  Identities=16%  Similarity=0.092  Sum_probs=140.2

Q ss_pred             HHHHHHHHHHHHHHHHHhhccChhhHhHhhcchhHHHHHHHHHHHhhcccccccccccchhhhhhhhhchhheeeccCCC
Q 020034           80 FLLSVFGCSSQIFSFVGIQYSSPTLSTAMLNLIPAFTFVLAIIFRLEKLNWENKSSQAKSLGTFASIGGAFVVTFYKGPP  159 (332)
Q Consensus        80 ~~~g~~g~~~~~l~~~gl~~~sa~~A~~i~~~~P~~~~lls~l~~~Ek~~~~~~~s~~~~~gi~l~l~Gv~ll~~~~g~~  159 (332)
                      +.+++-..+.+.....++||.+=..+.+=-++-|+=+++++.++.|.+-.|+      |...+.+.+.|+.+.. +|.+.
T Consensus        89 aAcs~sYLlAMVssN~Alq~vpYPTqVlgKScKPIPVMilGVl~~~KsY~w~------kY~cVL~IV~GValFm-YK~~K  161 (337)
T KOG1580|consen   89 AACSASYLLAMVSSNQALQYVPYPTQVLGKSCKPIPVMILGVLFAHKSYHWR------KYCCVLMIVVGVALFM-YKENK  161 (337)
T ss_pred             HHHHHHHHHHHHhccchhcccCCcHHHhcccCCCcceeeeehhhhcccccHH------HHHHHHHHHHHHHHhh-ccccc
Confidence            3455555678888999999998777777778899999999999987776654      5899999999997764 66432


Q ss_pred             CcCCCCCCCCCccccCCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHhcc-hHHHHHHHHHHHHHHHHHHHHHHHcCCC
Q 020034          160 LIGELSHSGSPRRLLLSPQLSWILGGFFLAAEAFMNSAWFILQALILRKFA-AVLIIMFYLFFFNTILSTAFALIVVSEP  238 (332)
Q Consensus       160 ~~~~~~~~~~~~~~~~~~~~~~~~G~~l~L~aa~~~A~~~v~~~~~~~~~~-~~~~i~~~~~l~g~i~~~~~~~~~~~~~  238 (332)
                      ..             ..++.+...|.+++++|-..=.+-...|.|+.+.+. +...++.++.+.+++.+..-.++++...
T Consensus       162 v~-------------g~e~~t~g~GElLL~lSL~mDGlTg~~Qdrira~yq~~g~~MM~~~NlwStL~Lg~g~lfTGElw  228 (337)
T KOG1580|consen  162 VG-------------GAEDKTFGFGELLLILSLAMDGLTGSIQDRIRASYQRTGTSMMFYTNLWSTLYLGAGLLFTGELW  228 (337)
T ss_pred             cC-------------CCcccccchHHHHHHHHHHhcccchhHHHHHHHhhccCchhhHHHHHHHHHHHhhhhheehhhHH
Confidence            21             122445678999999987777777778888755542 4456777777877777655444443210


Q ss_pred             C--CccccchhhhHHHHhhh--hhhHHHHHHHHhhcc-h--hhhhcchHHHHHHHHHHHHhCCCcc
Q 020034          239 S--DWKLGLDIGLVAVLYSV--SSYWHWVSSWLVHMV-P--VENWTSLCINVQALGHCLLYCHGCR  297 (332)
Q Consensus       239 ~--~~~~~~~~~~~~ll~~g--t~v~~~l~~~a~~~~-~--~s~~~~l~pv~~~i~~~l~lgE~~~  297 (332)
                      +  .+.......++-+...+  +.+++++...-+... |  -|+...-.-.++++.++++++.+++
T Consensus       229 eF~yF~~RhP~~~~~l~l~ai~s~LGQ~fIF~tv~~FgPLtCSivTTTRKfFTil~SVllf~npls  294 (337)
T KOG1580|consen  229 EFFYFVQRHPYVFWDLTLLAIASCLGQWFIFKTVEEFGPLTCSIVTTTRKFFTILISVLLFNNPLS  294 (337)
T ss_pred             HHHHHHHhccHHHHHHHHHHHHHHhhhHHHHHHHHHhCCeeEEEEeehHHHHHHHHHHHHhcCcCc
Confidence            0  00000111122222223  889999999999999 8  7788888999999999999999986

>KOG1581 consensus UDP-galactose transporter related protein [Carbohydrate transport and metabolism]

Probab=97.91  E-value=0.0011  Score=60.95  Aligned_cols=236  Identities=14%  Similarity=0.170  Sum_probs=150.7

Q ss_pred             ChHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhhccChhhHhHhhc--chhHHHH
Q 020034           40 NKYVIIVYSDALSSLFFLFCSFLFHRSERPQLTFSILCSFFLLSVFGCSSQIFSFVGIQYSSPTLSTAMLN--LIPAFTF  117 (332)
Q Consensus        40 ~p~~~~~~R~~~a~i~ll~~~~~~~r~~~~~~~~~~~~~l~~~g~~g~~~~~l~~~gl~~~sa~~A~~i~~--~~P~~~~  117 (332)
                      +|..+.+.+-+.+.++-..  ++..++... ...+-|......++.+.....+.+.+++|.|=..-.+-=.  ..|++  
T Consensus        50 ~~~fL~~~q~l~~~~~s~~--~l~~~k~~~-~~~apl~~y~~is~tn~~s~~~~yeaLKyvSyPtq~LaKscKmIPVm--  124 (327)
T KOG1581|consen   50 HSLFLVFCQRLVALLVSYA--MLKWWKKEL-SGVAPLYKYSLISFTNTLSSWCGYEALKYVSYPTQTLAKSCKMIPVM--  124 (327)
T ss_pred             ccHHHHHHHHHHHHHHHHH--HHhcccccC-CCCCchhHHhHHHHHhhcchHHHHHHHHhccchHHHHHHHhhhhHHH--
Confidence            5666666666666554422  222233222 2223456677788888888899999999986444333322  55554  


Q ss_pred             HHHHHHHhhcccccccccccchhhhhhhhhchhheeeccCCCCcCCCCCCCCCccccCCCCCcchhHHHHHHHHHHHHHH
Q 020034          118 VLAIIFRLEKLNWENKSSQAKSLGTFASIGGAFVVTFYKGPPLIGELSHSGSPRRLLLSPQLSWILGGFFLAAEAFMNSA  197 (332)
Q Consensus       118 lls~l~~~Ek~~~~~~~s~~~~~gi~l~l~Gv~ll~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~G~~l~L~aa~~~A~  197 (332)
                      +...++.+.|.+.      .+.+..++.-.|+.+-.+.+..+  ..+          .....+...|..+....-+.=+.
T Consensus       125 lmg~Lvy~~ky~~------~eYl~~~LIs~GvsiF~l~~~s~--s~~----------~~g~~ns~~G~~Ll~~~L~fDgf  186 (327)
T KOG1581|consen  125 LMGTLVYGRKYSS------FEYLVAFLISLGVSIFSLFPNSD--SSS----------KSGRENSPIGILLLFGYLLFDGF  186 (327)
T ss_pred             HHHHHHhcCccCc------HHHHHHHHHHhheeeEEEecCCC--Ccc----------ccCCCCchHhHHHHHHHHHHHhh
Confidence            4677777666554      45788888888886665443222  000          11123446798888887777777


Q ss_pred             HHHHHHHHHHhcc-hHHHHHHHHHHHHHHHHHHHHHHHcCCCCCc---cccchhhhHHHHhhh-hhhHHHHHHHHhhcc-
Q 020034          198 WFILQALILRKFA-AVLIIMFYLFFFNTILSTAFALIVVSEPSDW---KLGLDIGLVAVLYSV-SSYWHWVSSWLVHMV-  271 (332)
Q Consensus       198 ~~v~~~~~~~~~~-~~~~i~~~~~l~g~i~~~~~~~~~~~~~~~~---~~~~~~~~~~ll~~g-t~v~~~l~~~a~~~~-  271 (332)
                      -+-.|+++.+++. ++..+++...+++++......+-.++..+..   ..++...+-.++|.- +.+++.+.++-+++. 
T Consensus       187 Tn~tQd~lf~~~k~s~~~mM~~vNLf~~i~~~~~li~qg~~~~av~F~~~hp~~~~Di~l~s~~gavGQ~FI~~TI~~FG  266 (327)
T KOG1581|consen  187 TNATQDSLFKKYKVSSLHMMFGVNLFSAILNGTYLILQGHLLPAVSFIKEHPDVAFDILLYSTCGAVGQLFIFYTIERFG  266 (327)
T ss_pred             HHhHHHHHhccCCccHhHHHHHHHHHHHHHHHHhhhcCCCCchHHHHHHcChhHHHHHHHHHHhhhhhhheehhhHhhcc
Confidence            7778888877643 5778888888888888766522222211111   112222222334443 789999999999999 


Q ss_pred             h--hhhhcchHHHHHHHHHHHHhCCCccc
Q 020034          272 P--VENWTSLCINVQALGHCLLYCHGCRH  298 (332)
Q Consensus       272 ~--~s~~~~l~pv~~~i~~~l~lgE~~~~  298 (332)
                      |  -++++...=.+++.++.+.+|++++.
T Consensus       267 slt~t~I~ttRk~~si~lS~i~f~h~~s~  295 (327)
T KOG1581|consen  267 SLTFTTIMTTRKMVSIMLSCIVFGHPLSS  295 (327)
T ss_pred             cHHHHHHHHHHHHHHHHHHHHHhCCccch
Confidence            8  77788888899999999999999974

>PRK02971 4-amino-4-deoxy-L-arabinose-phosphoundecaprenol flippase subunit ArnF; Provisional

Probab=97.90  E-value=0.00013  Score=59.72  Aligned_cols=116  Identities=16%  Similarity=0.165  Sum_probs=85.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHHH-HHHHH
Q 020034           13 PSVGMVIVLLAQVSNMEVIKAAMSKGINKYVIIVYSDALSSLFFLFCSFLFHRSERPQLTFSILCSFFLLSVFG-CSSQI   91 (332)
Q Consensus        13 ~~l~ll~~~~~wg~~~~~~K~~l~~~~~p~~~~~~R~~~a~i~ll~~~~~~~r~~~~~~~~~~~~~l~~~g~~g-~~~~~   91 (332)
                      ++++++++.++-+...++.|..+++ .+...... +. .      ......       .++   ...+..|+.. .+.+.
T Consensus         3 ~~~~i~~sv~l~~~gQl~~K~g~~~-~g~~~~~~-~~-~------~~~~~~-------~~p---~~~i~lgl~~~~la~~   63 (129)
T PRK02971          3 GYLWGLASVLLASVAQLSLKWGMSR-LPLLSHAW-DF-I------AALLAF-------GLA---LRAVLLGLAGYALSML   63 (129)
T ss_pred             cHHHHHHHHHHHHHHHHHHHHHHhh-CCCccchh-HH-H------HHHHHH-------hcc---HHHHHHHHHHHHHHHH
Confidence            6778888888888889999998764 43332211 11 0      000000       000   1245677777 89999


Q ss_pred             HHHHHhhccChhhHhHhhcchhHHHHHHHHH--HHhhcccccccccccchhhhhhhhhchhhee
Q 020034           92 FSFVGIQYSSPTLSTAMLNLIPAFTFVLAII--FRLEKLNWENKSSQAKSLGTFASIGGAFVVT  153 (332)
Q Consensus        92 l~~~gl~~~sa~~A~~i~~~~P~~~~lls~l--~~~Ek~~~~~~~s~~~~~gi~l~l~Gv~ll~  153 (332)
                      ++..++++.+.+.|.-+.+..+.++.+.++.  +++|+++++|      ++|+++.++|++++.
T Consensus        64 ~w~~aL~~~~ls~Ayp~~sl~~~~v~~~~~~~~~~~E~ls~~~------~iGi~lIi~GV~lv~  121 (129)
T PRK02971         64 CWLKALRYLPLSRAYPLLSLSYALVYLAAMLLPWFNETFSLKK------TLGVACIMLGVWLIN  121 (129)
T ss_pred             HHHHHHHhCCcHHHHHHHHHHHHHHHHHHHHHHHcCCCCCHHH------HHHHHHHHHHHHHhc
Confidence            9999999999999999999999888888875  8999998864      999999999998875

>PF03151 TPT: Triose-phosphate Transporter family; InterPro: IPR004853 This family consists entirely of aligned regions from Drosophila melanogaster proteins

Probab=97.83  E-value=0.00029  Score=58.78  Aligned_cols=115  Identities=14%  Similarity=0.154  Sum_probs=84.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHh------cchHHHHHHHHHHHHHHHHHHHHHHHcCCC-C-Cc-cc-c-----chhh
Q 020034          184 GGFFLAAEAFMNSAWFILQALILRK------FAAVLIIMFYLFFFNTILSTAFALIVVSEP-S-DW-KL-G-----LDIG  248 (332)
Q Consensus       184 G~~l~L~aa~~~A~~~v~~~~~~~~------~~~~~~i~~~~~l~g~i~~~~~~~~~~~~~-~-~~-~~-~-----~~~~  248 (332)
                      |.++.++|.++.|++.++.|+..++      ..++..+..+....+.+.+.+..++.|.+. . .. .. .     ....
T Consensus         1 G~~~~l~s~~~~al~~v~~~~~~~~~~~~~~~~~~~~l~~~~~~~s~~~l~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~   80 (153)
T PF03151_consen    1 GFILALASSLFSALRNVLIKKLLKKVSSNSKKLNPLNLLYYNSPISFIILLPLAFLLEGPQLSSFFSEIFGEELSSDPNF   80 (153)
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHHhcccccccCCCHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHhhhhhhcchHHH
Confidence            6788999999999999999998666      237889999999999999999988877532 1 01 00 0     1122


Q ss_pred             hHHHHhhh--hhhHHHHHHHHhhcc-h--hhhhcchHHHHHHHHHHHHhCCCccc
Q 020034          249 LVAVLYSV--SSYWHWVSSWLVHMV-P--VENWTSLCINVQALGHCLLYCHGCRH  298 (332)
Q Consensus       249 ~~~ll~~g--t~v~~~l~~~a~~~~-~--~s~~~~l~pv~~~i~~~l~lgE~~~~  298 (332)
                      +..++..|  ..+-.....+.+++. |  .++...+-.+...+.|++++||+++.
T Consensus        81 ~~~~~~~~~~~~~~n~~~f~~i~~tS~lt~~v~~~~K~~~~i~~s~~~f~~~~t~  135 (153)
T PF03151_consen   81 IFLLILSGLLAFLYNLSSFLLIKLTSPLTYSVLGNVKRILVILLSVIFFGEPITP  135 (153)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhhhcChhHHHHHHHHHHHHHHHHHhhhcCCcCCH
Confidence            33333333  333334556777888 7  88999999999999999999999874

O49724 from SWISSPROT contains three repeats of this region. In other proteins, the aligned region is located towards the C terminus. The function of the aligned region is unknown.

>TIGR00688 rarD rarD protein

Probab=97.82  E-value=0.0002  Score=65.31  Aligned_cols=114  Identities=11%  Similarity=0.035  Sum_probs=83.0

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHcCCC---CCcc-ccchhhhHHHHhhh--
Q 020034          183 LGGFFLAAEAFMNSAWFILQALILRKFAAVLIIMFYLFFFNTILSTAFALIVVSEP---SDWK-LGLDIGLVAVLYSV--  256 (332)
Q Consensus       183 ~G~~l~L~aa~~~A~~~v~~~~~~~~~~~~~~i~~~~~l~g~i~~~~~~~~~~~~~---~~~~-~~~~~~~~~ll~~g--  256 (332)
                      .|..+.+++++.|+...+..|. ..+. +|..+.++.++++++.+.+......+..   ..+. ......+..+...|  
T Consensus         2 ~g~~~~i~a~~~wg~~~~~~k~-~~~~-~~~~i~~~R~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~   79 (256)
T TIGR00688         2 KGIIVSLLASFLFGYMYYYSKL-LKPL-PATDILGHRMIWSFPFMLLSVTLFRQWAALIERLKRIQKRPLILSLLLCGLL   79 (256)
T ss_pred             CcHHHHHHHHHHHHHHHHHHHH-hccC-CHHHHHHHHHHHHHHHHHHHHHHHcchHHHHHHHhCcccchHHHHHHHHHHH
Confidence            3788999999999999999886 4566 5899999999999888766554432110   0111 00111122233333  


Q ss_pred             hhhHHHHHHHHhhcc-h--hhhhcchHHHHHHHHHHHHhCCCccc
Q 020034          257 SSYWHWVSSWLVHMV-P--VENWTSLCINVQALGHCLLYCHGCRH  298 (332)
Q Consensus       257 t~v~~~l~~~a~~~~-~--~s~~~~l~pv~~~i~~~l~lgE~~~~  298 (332)
                      ..+.+.++++++++. +  ++...+..|++++++++++++|+++.
T Consensus        80 ~~~~~~~~~~a~~~~~~~~a~~l~~~~Pi~~~lla~~~l~Ek~~~  124 (256)
T TIGR00688        80 IGFNWWLFIWAVNNGSSLEVSLGYLINPLVMVALGRVFLKERISR  124 (256)
T ss_pred             HHHHHHHHHHHHHcchHHHHHHHHHHHHHHHHHHHHHHHhcCCCH
Confidence            456788999999999 4  88999999999999999999999974

This uncharacterized protein is predicted to have many membrane-spanning domains.

>KOG4314 consensus Predicted carbohydrate/phosphate translocator [General function prediction only]

Probab=97.80  E-value=0.00014  Score=62.85  Aligned_cols=97  Identities=21%  Similarity=0.331  Sum_probs=83.2

Q ss_pred             HHHHHHHHHHhhccChhhHhHhhcchhHHHHHHHHHHHhhcccccccccccchhhhhhhhhchhheeeccCCCCcCCCCC
Q 020034           87 CSSQIFSFVGIQYSSPTLSTAMLNLIPAFTFVLAIIFRLEKLNWENKSSQAKSLGTFASIGGAFVVTFYKGPPLIGELSH  166 (332)
Q Consensus        87 ~~~~~l~~~gl~~~sa~~A~~i~~~~P~~~~lls~l~~~Ek~~~~~~~s~~~~~gi~l~l~Gv~ll~~~~g~~~~~~~~~  166 (332)
                      .+.++.|..+++..+++.++.+..+.-.|+.+++++.+++|+..      .|+++.++++.|++.+...+++        
T Consensus        64 t~aNY~Yl~AL~~is~s~asai~~CNaAFVfiLa~IVL~D~~~~------~kIlaailAI~GiVmiay~DN~--------  129 (290)
T KOG4314|consen   64 TGANYLYLLALKKISASDASAIFACNAAFVFILAIIVLGDRFMG------FKILAAILAIGGIVMIAYADNE--------  129 (290)
T ss_pred             ecCCcHHHHHHHhcChhhhHHHHHhhHHHHHHHHHHHhccchhh------hhHHHHHHHhCcEEEEEeccch--------
Confidence            56788999999999999999999999999999999999999875      4699999999999887732221        


Q ss_pred             CCCCccccCCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHh
Q 020034          167 SGSPRRLLLSPQLSWILGGFFLAAEAFMNSAWFILQALILRK  208 (332)
Q Consensus       167 ~~~~~~~~~~~~~~~~~G~~l~L~aa~~~A~~~v~~~~~~~~  208 (332)
                                 ..+...|+.+...|++.-|+|-++.|+...+
T Consensus       130 -----------~a~e~iGi~~AV~SA~~aAlYKV~FK~~iGn  160 (290)
T KOG4314|consen  130 -----------HADEIIGIACAVGSAFMAALYKVLFKMFIGN  160 (290)
T ss_pred             -----------hhhhhhhHHHHHHHHHHHHHHHHHHHHHhcc
Confidence                       2245789999999999999999999987654

>KOG3912 consensus Predicted integral membrane protein [General function prediction only]

Probab=97.72  E-value=0.0014  Score=59.70  Aligned_cols=183  Identities=15%  Similarity=0.117  Sum_probs=123.8

Q ss_pred             HHHHHHHHHHHh---cCCC----hHHHHHHHHHHHHHHHHHHHHHhhcCCCC---------------CCCHHHHHHHHHH
Q 020034           25 VSNMEVIKAAMS---KGIN----KYVIIVYSDALSSLFFLFCSFLFHRSERP---------------QLTFSILCSFFLL   82 (332)
Q Consensus        25 g~~~~~~K~~l~---~~~~----p~~~~~~R~~~a~i~ll~~~~~~~r~~~~---------------~~~~~~~~~l~~~   82 (332)
                      +.|.+.+|.+=+   ++-|    |...+..-|+-=.+|+..+..++.|...+               +.+..   ..+.=
T Consensus        16 s~Ntl~aKwadsi~~eg~pgfqhpvlqal~mFlGEflCl~vf~lir~~sn~~g~~s~~~~ilsq~~~pf~p~---lfl~P   92 (372)
T KOG3912|consen   16 SFNTLVAKWADSIQAEGSPGFQHPVLQALLMFLGEFLCLAVFKLIRLRSNGQGVSSDLDSILSQDSSPFNPV---LFLPP   92 (372)
T ss_pred             cHHHHHHHHHHhhhhhCCCccccHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCcccccccccccccCCCCcc---eecCh
Confidence            345566776422   2233    55555555555567777666554433221               11111   11223


Q ss_pred             HHHHHHHHHHHHHHhhccChhhHhHhhcchhHHHHHHHHHHHhhcccccccccccchhhhhhhhhchhheeeccCCCCcC
Q 020034           83 SVFGCSSQIFSFVGIQYSSPTLSTAMLNLIPAFTFVLAIIFRLEKLNWENKSSQAKSLGTFASIGGAFVVTFYKGPPLIG  162 (332)
Q Consensus        83 g~~g~~~~~l~~~gl~~~sa~~A~~i~~~~P~~~~lls~l~~~Ek~~~~~~~s~~~~~gi~l~l~Gv~ll~~~~g~~~~~  162 (332)
                      +++......+.+.|+.+|+++.-..+-...-+|+.++|.-+++.+++.+      ||+|+.....|.+++...+-..   
T Consensus        93 al~Di~gsslm~vgL~lTsASsfQMlRGaviIFvglfst~~Ln~ti~~~------qWl~i~fv~lGlviVg~~d~~~---  163 (372)
T KOG3912|consen   93 ALCDIAGSSLMYVGLNLTSASSFQMLRGAVIIFVGLFSTMFLNRTITGR------QWLGILFVSLGLVIVGSLDVHL---  163 (372)
T ss_pred             HHHHHhhhHHHHHHHHHhhHHHHHHhhcchhhhhHHHHHHHHhcccchh------hHHHHHHHHhhhheeeeeeccc---
Confidence            4445666678899999999999989999999999999999999988765      5999999999998876431100   


Q ss_pred             CCCCCCCCccccCCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHhc-chHHHHHHHHHHHHHHHH
Q 020034          163 ELSHSGSPRRLLLSPQLSWILGGFFLAAEAFMNSAWFILQALILRKF-AAVLIIMFYLFFFNTILS  227 (332)
Q Consensus       163 ~~~~~~~~~~~~~~~~~~~~~G~~l~L~aa~~~A~~~v~~~~~~~~~-~~~~~i~~~~~l~g~i~~  227 (332)
                        +++  |   ..+ -.+...|+++.+.|-+.-|+.+++-.|.+++. .+|.....|+.++|.+.+
T Consensus       164 --~~~--p---~~d-~s~iitGdllIiiaqiivaiQ~v~Eek~l~~~nV~pl~avg~eGlfG~v~~  221 (372)
T KOG3912|consen  164 --VTD--P---YTD-YSSIITGDLLIIIAQIIVAIQMVCEEKQLKKSNVAPLQAVGWEGLFGLVIL  221 (372)
T ss_pred             --ccC--C---ccc-cccchhhhHHHHHHHHHHHHHHHHHHhhhhhccCCHHHHhhhhhhHHHHHH
Confidence              000  0   001 13457899999999999999999988887663 368999999999994433

>PRK13499 rhamnose-proton symporter; Provisional

Probab=97.67  E-value=0.0085  Score=57.08  Aligned_cols=178  Identities=12%  Similarity=0.049  Sum_probs=108.0

Q ss_pred             chhhHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHH--HHHhhcCC---CCCCCHHHHHHHHHHH
Q 020034            9 RAALPSVGMVIVLLAQVSNMEVIKAAMSKGINKYVIIVYSDALSSLFFLFC--SFLFHRSE---RPQLTFSILCSFFLLS   83 (332)
Q Consensus         9 ~~~~~~l~ll~~~~~wg~~~~~~K~~l~~~~~p~~~~~~R~~~a~i~ll~~--~~~~~r~~---~~~~~~~~~~~l~~~g   83 (332)
                      +-.-+++..+++.++||++.+-.|.. .. .| .+....=..+-.-++.|+  ..+..|..   ....+.+.+..-++.|
T Consensus         4 ~~~~G~~~~~i~~~~~GS~~~p~K~~-k~-w~-wE~~W~v~gi~~wl~~~~~~g~~~~~~f~~~~~~~~~~~~~~~~l~G   80 (345)
T PRK13499          4 AIILGIIWHLIGGASSGSFYAPFKKV-KK-WS-WETMWSVGGIFSWLILPWLIAALLLPDFWAYYSSFSGSTLLPVFLFG   80 (345)
T ss_pred             hhHHHHHHHHHHHHHhhccccccccc-CC-Cc-hhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHhcCHHHHHHHHHHH
Confidence            45668999999999999999999984 32 33 111111011111111121  11111110   0123455566666666


Q ss_pred             HHHHHHHHHHHHHhhccChhhHhHhh-cchhHHHHHHHHHHHhhcc---cccccccccchhhhhhhhhchhheeeccCCC
Q 020034           84 VFGCSSQIFSFVGIQYSSPTLSTAML-NLIPAFTFVLAIIFRLEKL---NWENKSSQAKSLGTFASIGGAFVVTFYKGPP  159 (332)
Q Consensus        84 ~~g~~~~~l~~~gl~~~sa~~A~~i~-~~~P~~~~lls~l~~~Ek~---~~~~~~s~~~~~gi~l~l~Gv~ll~~~~g~~  159 (332)
                      ++=...+..++.++++...+.+--+. .+.=+...++..++++|--   +.++  ...-.+|+++.++|+++.... |..
T Consensus        81 ~~W~iG~i~~~~s~~~iGvS~~~pIs~Gl~lv~gtL~~~i~~gew~~~~~t~~--g~~~~~gv~liliGi~l~s~A-g~~  157 (345)
T PRK13499         81 ALWGIGGITYGLTMRYLGMSLGIGIAIGITLIVGTLMPPIINGNFDVLLATNG--GRMTLLGVLVALIGVAIVGRA-GQL  157 (345)
T ss_pred             HHHHhhhhhHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHccccccccccch--HHHHHHHHHHHHHHHHHHHHh-hhh
Confidence            66678889999999999888875554 4666777788888888753   2222  234688999999999886631 110


Q ss_pred             CcCCCCCCCCCccccCCCCCcchhHHHHHHHHHHHHHHHH
Q 020034          160 LIGELSHSGSPRRLLLSPQLSWILGGFFLAAEAFMNSAWF  199 (332)
Q Consensus       160 ~~~~~~~~~~~~~~~~~~~~~~~~G~~l~L~aa~~~A~~~  199 (332)
                      .+    +.+ .  ++...+.+...|.+..+++.+.++.|.
T Consensus       158 k~----~~~-~--~~~~~~~~~~KGi~ialisgi~~~~f~  190 (345)
T PRK13499        158 KE----RKM-G--IKKAEEFNLKKGLILAVMSGIFSACFS  190 (345)
T ss_pred             cc----ccc-c--cccccccchHhHHHHHHHHHHHHHHHH
Confidence            00    000 0  000123456789999999999999999

>COG5006 rhtA Threonine/homoserine efflux transporter [Amino acid transport and metabolism]

Probab=97.65  E-value=0.00058  Score=61.37  Aligned_cols=131  Identities=13%  Similarity=0.035  Sum_probs=105.7

Q ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHHH-HH
Q 020034           10 AALPSVGMVIVLLAQVSNMEVIKAAMSKGINKYVIIVYSDALSSLFFLFCSFLFHRSERPQLTFSILCSFFLLSVFG-CS   88 (332)
Q Consensus        10 ~~~~~l~ll~~~~~wg~~~~~~K~~l~~~~~p~~~~~~R~~~a~i~ll~~~~~~~r~~~~~~~~~~~~~l~~~g~~g-~~   88 (332)
                      ..-+..+.+.+..+|..+-+..|.+-+ ..+-..-++.-+.+|+++.+|+..-.  ....-.+++.+..-+..|++. .+
T Consensus       146 Dp~Gv~~Al~AG~~Wa~YIv~G~r~g~-~~~g~~g~a~gm~vAaviv~Pig~~~--ag~~l~~p~ll~laLgvavlSSal  222 (292)
T COG5006         146 DPVGVALALGAGACWALYIVLGQRAGR-AEHGTAGVAVGMLVAALIVLPIGAAQ--AGPALFSPSLLPLALGVAVLSSAL  222 (292)
T ss_pred             CHHHHHHHHHHhHHHHHHHHHcchhcc-cCCCchHHHHHHHHHHHHHhhhhhhh--cchhhcChHHHHHHHHHHHHhccc
Confidence            445677888899999999999998753 35677788899999999999997642  111123455555666788888 89


Q ss_pred             HHHHHHHHhhccChhhHhHhhcchhHHHHHHHHHHHhhcccccccccccchhhhhhhhhch
Q 020034           89 SQIFSFVGIQYSSPTLSTAMLNLIPAFTFVLAIIFRLEKLNWENKSSQAKSLGTFASIGGA  149 (332)
Q Consensus        89 ~~~l~~~gl~~~sa~~A~~i~~~~P~~~~lls~l~~~Ek~~~~~~~s~~~~~gi~l~l~Gv  149 (332)
                      .+.+...++++.+...-+.+..+.|.+.++.++++++|+++..|      |+++.+.+.+.
T Consensus       223 PYsLEmiAL~rlp~~~F~~LlSLePa~aAl~G~i~L~e~ls~~q------wlaI~~ViaAs  277 (292)
T COG5006         223 PYSLEMIALRRLPARTFGTLLSLEPALAALSGLIFLGETLTLIQ------WLAIAAVIAAS  277 (292)
T ss_pred             chHHHHHHHhhCChhHHHHHHHhhHHHHHHHHHHHhcCCCCHHH------HHHHHHHHHHH
Confidence            99999999999999999999999999999999999999998865      67776665554

>PF06027 DUF914: Eukaryotic protein of unknown function (DUF914); InterPro: IPR009262 This family consists of several hypothetical proteins of unknown function

Probab=97.60  E-value=0.00093  Score=63.44  Aligned_cols=140  Identities=11%  Similarity=0.051  Sum_probs=105.7

Q ss_pred             cchhhHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCH--HHHHHHHHHHHH
Q 020034            8 MRAALPSVGMVIVLLAQVSNMEVIKAAMSKGINKYVIIVYSDALSSLFFLFCSFLFHRSERPQLTF--SILCSFFLLSVF   85 (332)
Q Consensus         8 ~~~~~~~l~ll~~~~~wg~~~~~~K~~l~~~~~p~~~~~~R~~~a~i~ll~~~~~~~r~~~~~~~~--~~~~~l~~~g~~   85 (332)
                      .++.++-++++.+++++|.+++.-+...++ .|+.++.+.=-+++.++..+....++++...+.++  +....++..++.
T Consensus       164 ~~~i~GDll~l~~a~lya~~nV~~E~~v~~-~~~~~~lg~~Glfg~ii~~iq~~ile~~~i~~~~w~~~~~~~~v~~~~~  242 (334)
T PF06027_consen  164 SNPILGDLLALLGAILYAVSNVLEEKLVKK-APRVEFLGMLGLFGFIISGIQLAILERSGIESIHWTSQVIGLLVGYALC  242 (334)
T ss_pred             CccchhHHHHHHHHHHHHHHHHHHHHhccc-CCHHHHHHHHHHHHHHHHHHHHHheehhhhhccCCChhhHHHHHHHHHH
Confidence            467889999999999999999999988764 89888887777788887777766666665443333  333332222232


Q ss_pred             HHHHHHHHHHHhhccChhhHhHhhcchhHHHHHHHHHHHhhcccccccccccchhhhhhhhhchhheee
Q 020034           86 GCSSQIFSFVGIQYSSPTLSTAMLNLIPAFTFVLAIIFRLEKLNWENKSSQAKSLGTFASIGGAFVVTF  154 (332)
Q Consensus        86 g~~~~~l~~~gl~~~sa~~A~~i~~~~P~~~~lls~l~~~Ek~~~~~~~s~~~~~gi~l~l~Gv~ll~~  154 (332)
                      ....+.+.-..+++++|+...+=.-++.++..++.++++||++++.      .++|.++.++|.++...
T Consensus       243 lf~~y~l~p~~l~~ssAt~~nLsLLTsd~~ali~~i~~f~~~~~~l------y~~af~lIiiG~vvy~~  305 (334)
T PF06027_consen  243 LFLFYSLVPIVLRMSSATFFNLSLLTSDFYALIIDIFFFGYKFSWL------YILAFALIIIGFVVYNL  305 (334)
T ss_pred             HHHHHHHHHHHHHhCccceeehHHHHhhHHHHHHHHHhcCccccHH------HHHHHHHHHHHhheEEc
Confidence            2455556667788999887777677889999999999999999874      48999999999988764

Some of the sequences in this family are annotated as putative membrane proteins.

>PF06800 Sugar_transport: Sugar transport protein; InterPro: IPR010651 This is a family of bacterial sugar transporters approximately 300 residues long

Probab=97.45  E-value=0.0014  Score=60.09  Aligned_cols=134  Identities=10%  Similarity=0.026  Sum_probs=92.9

Q ss_pred             chhhHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHHHHH
Q 020034            9 RAALPSVGMVIVLLAQVSNMEVIKAAMSKGINKYVIIVYSDALSSLFFLFCSFLFHRSERPQLTFSILCSFFLLSVFGCS   88 (332)
Q Consensus         9 ~~~~~~l~ll~~~~~wg~~~~~~K~~l~~~~~p~~~~~~R~~~a~i~ll~~~~~~~r~~~~~~~~~~~~~l~~~g~~g~~   88 (332)
                      +..|+++.++++.+.+..+..+.|..   ++||.....-...-..+.-+.+..+. ++.  ..+++.+ +-++.|++-..
T Consensus       135 ~~~kgi~~Ll~stigy~~Y~~~~~~~---~~~~~~~~lPqaiGm~i~a~i~~~~~-~~~--~~~k~~~-~nil~G~~w~i  207 (269)
T PF06800_consen  135 NMKKGILALLISTIGYWIYSVIPKAF---HVSGWSAFLPQAIGMLIGAFIFNLFS-KKP--FFEKKSW-KNILTGLIWGI  207 (269)
T ss_pred             chhhHHHHHHHHHHHHHHHHHHHHhc---CCChhHhHHHHHHHHHHHHHHHhhcc-ccc--ccccchH-HhhHHHHHHHH
Confidence            46778999999999999999998863   37777776655333222222222221 111  1222223 33556666667


Q ss_pred             HHHHHHHHhhccChhhHhHhhcchhHHHHHHHHHHHhhcccccccccccchhhhhhhhhchhh
Q 020034           89 SQIFSFVGIQYSSPTLSTAMLNLIPAFTFVLAIIFRLEKLNWENKSSQAKSLGTFASIGGAFV  151 (332)
Q Consensus        89 ~~~l~~~gl~~~sa~~A~~i~~~~P~~~~lls~l~~~Ek~~~~~~~s~~~~~gi~l~l~Gv~l  151 (332)
                      .+.+++.+.+....+.+-.+.++.++...+.+.+++||+=++|++  ....+|+++.++|.++
T Consensus       208 gnl~~~is~~~~G~a~af~lSQ~~vvIStlgGI~il~E~Kt~ke~--~~~~~G~~Liv~G~il  268 (269)
T PF06800_consen  208 GNLFYLISAQKNGVATAFTLSQLGVVISTLGGIFILKEKKTKKEM--IYTLIGLILIVIGAIL  268 (269)
T ss_pred             HHHHHHHhHHhccchhhhhHHhHHHHHHHhhhheEEEecCchhhH--HHHHHHHHHHHHhhhc
Confidence            778899999999999999999999999999999999999666553  3456777777777653

Members include glucose uptake proteins [], ribose transport proteins, and several putative and hypothetical membrane proteins probably involved in sugar transport across bacterial membranes.; GO: 0015144 carbohydrate transmembrane transporter activity, 0034219 carbohydrate transmembrane transport, 0016021 integral to membrane

>PF08449 UAA: UAA transporter family; InterPro: IPR013657 This family includes transporters with a specificity for UDP-N-acetylglucosamine []

Probab=97.23  E-value=0.0069  Score=56.80  Aligned_cols=135  Identities=21%  Similarity=0.280  Sum_probs=107.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHh-cCCChHHHHHHHHHHHHHHHHHHHHHhhcCC-CC-----CCCHHHHHHHHHHHHH
Q 020034           13 PSVGMVIVLLAQVSNMEVIKAAMS-KGINKYVIIVYSDALSSLFFLFCSFLFHRSE-RP-----QLTFSILCSFFLLSVF   85 (332)
Q Consensus        13 ~~l~ll~~~~~wg~~~~~~K~~l~-~~~~p~~~~~~R~~~a~i~ll~~~~~~~r~~-~~-----~~~~~~~~~l~~~g~~   85 (332)
                      ++.+++++.++-|...+..+..++ .+.++.+..++-...+.++.++........+ .+     ..+++.+..++...+.
T Consensus       155 G~~ll~~sl~~~a~~~~~qe~~~~~~~~~~~~~mfy~n~~~~~~~~~~~~~l~~~~~~~~~~f~~~~p~~~~~l~~~s~~  234 (303)
T PF08449_consen  155 GIILLLLSLLLDAFTGVYQEKLFKKYGKSPWELMFYTNLFSLPFLLILLFLLPTGEFRSAIRFISAHPSVLLYLLLFSLT  234 (303)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHHHHHHHhhHhhHHHHHHHHhHHHHHHHHHHHHH
Confidence            888999999999999999998775 3689999999999999888887666521111 10     1123445666777777


Q ss_pred             HHHHHHHHHHHhhccChhhHhHhhcchhHHHHHHHHHHHhhcccccccccccchhhhhhhhhchhhee
Q 020034           86 GCSSQIFSFVGIQYSSPTLSTAMLNLIPAFTFVLAIIFRLEKLNWENKSSQAKSLGTFASIGGAFVVT  153 (332)
Q Consensus        86 g~~~~~l~~~gl~~~sa~~A~~i~~~~P~~~~lls~l~~~Ek~~~~~~~s~~~~~gi~l~l~Gv~ll~  153 (332)
                      ++..+.+.+.-++..++...+++..+--+.+.++|.++++++++..+      |+|+++.+.|..+-.
T Consensus       235 ~~~g~~~i~~~~~~~~al~~t~v~t~Rk~~sillS~~~f~~~~~~~~------~~G~~lv~~g~~~~~  296 (303)
T PF08449_consen  235 GALGQFFIFYLIKKFSALTTTIVTTLRKFLSILLSVIIFGHPLSPLQ------WIGIVLVFAGIFLYS  296 (303)
T ss_pred             HHHHHHHHHHHHHhcCchhhhhHHHHHHHHHHHHHHHhcCCcCChHH------HHHHHHhHHHHHHHH
Confidence            77777787888999999999999999999999999999999988754      999999999987644

; GO: 0055085 transmembrane transport

>PF05653 Mg_trans_NIPA: Magnesium transporter NIPA; InterPro: IPR008521 This family consists of several eukaryotic proteins of unknown function

Probab=97.20  E-value=0.0053  Score=57.63  Aligned_cols=63  Identities=25%  Similarity=0.401  Sum_probs=54.5

Q ss_pred             HHHHHHHHHHhhccChhhHhHhhcchhHHHHHHHHHHHhhcccccccccccchhhhhhhhhchhheeec
Q 020034           87 CSSQIFSFVGIQYSSPTLSTAMLNLIPAFTFVLAIIFRLEKLNWENKSSQAKSLGTFASIGGAFVVTFY  155 (332)
Q Consensus        87 ~~~~~l~~~gl~~~sa~~A~~i~~~~P~~~~lls~l~~~Ek~~~~~~~s~~~~~gi~l~l~Gv~ll~~~  155 (332)
                      .++..+.+.++.+.+++..+=+..+.-++.++++..++|||++++.      +.|+.+++.|..++...
T Consensus        61 ~~g~~~~~~Al~~ap~slv~Plg~~~lv~~~~~a~~~l~e~~~~~~------~~G~~l~i~G~~liv~~  123 (300)
T PF05653_consen   61 VLGEILNFVALGFAPASLVAPLGALSLVFNAVLARFFLGEKLTRRD------IVGCALIILGSVLIVIF  123 (300)
T ss_pred             hcchHHHHHHHHhhhHHHHHHHHhhhhhhHHHHhHHHhcccchHhH------HhhHHHHHhhheeeEEe
Confidence            4556777889999999988888888899999999999999998765      89999999999887654

>KOG1442 consensus GDP-fucose transporter [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]

Probab=97.06  E-value=0.0058  Score=55.69  Aligned_cols=244  Identities=14%  Similarity=0.038  Sum_probs=130.1

Q ss_pred             HHHHHHhcC---C-ChHHHHHHHHHHHHHHHHHHHHHhhcC----CCCC--CCHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 020034           30 VIKAAMSKG---I-NKYVIIVYSDALSSLFFLFCSFLFHRS----ERPQ--LTFSILCSFFLLSVFGCSSQIFSFVGIQY   99 (332)
Q Consensus        30 ~~K~~l~~~---~-~p~~~~~~R~~~a~i~ll~~~~~~~r~----~~~~--~~~~~~~~l~~~g~~g~~~~~l~~~gl~~   99 (332)
                      ..|+.++..   . .|..+..++-+....+-+.+.....+.    ..|+  ++.+....+.-..+.-.+...+-.+.++|
T Consensus        46 ~nk~llss~~~~Ld~plf~t~~qcLvt~~~c~~ls~ls~k~~~~ftfp~~~ldl~t~r~vlplsvVfi~mI~fnnlcL~y  125 (347)
T KOG1442|consen   46 LNKHLLSSLVVILDAPLFITWYQCLVTTSICLVLSSLSVKYPGLFTFPSLQLDLATARQVLPLSVVFILMISFNNLCLKY  125 (347)
T ss_pred             hHHHHhhchhhhcCcHHHHHHHHHHHHHHHHHHHHHHHhhccceeccCcccccHHHHHhhcchhheeeeehhccceehhh
Confidence            356665431   2 488888888777766555555443221    1222  22222222222222222222233455666


Q ss_pred             cChhhHhHhhcchhHHHHHHHHHHHhhcccccccccccchhhhhhhhhchhheeeccCCCCcCCCCCCCCCccccCCCCC
Q 020034          100 SSPTLSTAMLNLIPAFTFVLAIIFRLEKLNWENKSSQAKSLGTFASIGGAFVVTFYKGPPLIGELSHSGSPRRLLLSPQL  179 (332)
Q Consensus       100 ~sa~~A~~i~~~~P~~~~lls~l~~~Ek~~~~~~~s~~~~~gi~l~l~Gv~ll~~~~g~~~~~~~~~~~~~~~~~~~~~~  179 (332)
                      .+.+-=-+=-.+.-+|++++++.++|+|-+.+       ..|-++.+++-+-+    |-+.+             +..+.
T Consensus       126 VgVaFYyvgRsLttvFtVlLtyvllkqkTs~~-------~~~~C~lIi~GF~l----GvdqE-------------~~~~~  181 (347)
T KOG1442|consen  126 VGVAFYYVGRSLTTVFTVLLTYVLLKQKTSFF-------ALGCCLLIILGFGL----GVDQE-------------GSTGT  181 (347)
T ss_pred             cceEEEEeccchhhhHHHHhHHhhcccccccc-------cceeehhheehhee----ccccc-------------cccCc
Confidence            55443323334667899999999999986543       33333333322222    32211             11122


Q ss_pred             cchhHHHHHHHHHHHHHHHHHHHHHHHHhcc-hHHHHHHHHHHHHHHHHHHHHHHHcCCCCCcc--ccchhhhHHHHhhh
Q 020034          180 SWILGGFFLAAEAFMNSAWFILQALILRKFA-AVLIIMFYLFFFNTILSTAFALIVVSEPSDWK--LGLDIGLVAVLYSV  256 (332)
Q Consensus       180 ~~~~G~~l~L~aa~~~A~~~v~~~~~~~~~~-~~~~i~~~~~l~g~i~~~~~~~~~~~~~~~~~--~~~~~~~~~ll~~g  256 (332)
                      -...|.+++..|.++-|+..+..||.+.... .-..++.+..+.+.++.+|...+.+.-..-+.  -.+....+.++.++
T Consensus       182 ls~~GvifGVlaSl~vAlnaiytkk~l~~v~~~iw~lt~ynnv~a~lLflpll~lnge~~~v~~~~~l~a~~Fw~~mtLs  261 (347)
T KOG1442|consen  182 LSWIGVIFGVLASLAVALNAIYTKKVLPPVGDCIWRLTAYNNVNALLLFLPLLILNGEFQAVVGFPHLPAIKFWILMTLS  261 (347)
T ss_pred             cchhhhHHHHHHHHHHHHHHHhhheecccccCeehhhHHHHHHHHHHHHHHHHHHcchHHHHcCcccchHHHHHHHHHHH
Confidence            2357999999999999999999887655533 34567778888888888887655432111121  11222334445555


Q ss_pred             hhhHHHHHHHHhhcc-hhhhhcc-----hHHHHHHHHHHHHhCCCcc
Q 020034          257 SSYWHWVSSWLVHMV-PVENWTS-----LCINVQALGHCLLYCHGCR  297 (332)
Q Consensus       257 t~v~~~l~~~a~~~~-~~s~~~~-----l~pv~~~i~~~l~lgE~~~  297 (332)
                      +..+|.+-+.---++ ..|+...     .-...-+++++.+++|.-+
T Consensus       262 glfgF~mgyvTg~QIK~TSplThnISgTAka~aQTvlAv~~y~E~ks  308 (347)
T KOG1442|consen  262 GLFGFAMGYVTGWQIKVTSPLTHNISGTAKAAAQTVLAVAYYSETKS  308 (347)
T ss_pred             HHHHHHhhheeeEEEEecccceeeecHhHHHHHHHHHHHHHHHHHhh
Confidence            555555533221122 1222222     1234456788899999975

>PRK10650 multidrug efflux system protein MdtI; Provisional

Probab=96.63  E-value=0.019  Score=45.56  Aligned_cols=60  Identities=12%  Similarity=0.042  Sum_probs=51.1

Q ss_pred             HHHHHHHHHHhhccChhhH-hHhhcchhHHHHHHHHHHHhhcccccccccccchhhhhhhhhchhhe
Q 020034           87 CSSQIFSFVGIQYSSPTLS-TAMLNLIPAFTFVLAIIFRLEKLNWENKSSQAKSLGTFASIGGAFVV  152 (332)
Q Consensus        87 ~~~~~l~~~gl~~~sa~~A-~~i~~~~P~~~~lls~l~~~Ek~~~~~~~s~~~~~gi~l~l~Gv~ll  152 (332)
                      ..++++...++++.|.+.| ++.....-+.+++.++++++|++++.|      ++|+.+.+.|++.+
T Consensus        46 ~~sf~~Ls~al~~lpvgvAYAvW~GiG~v~~~~ig~~~f~e~~~~~~------~~gi~lIi~GVi~l  106 (109)
T PRK10650         46 LAAFSALSQAVKGIDLSVAYALWGGFGIAATLAAGWILFGQRLNRKG------WIGLVLLLAGMVMI  106 (109)
T ss_pred             HHHHHHHHHHHhhCchHHHHHHHHHHHHHHHHHHHHHHcCCCCCHHH------HHHHHHHHHHHHHh
Confidence            6788899999999998888 444567778889999999999998764      99999999999764

>PRK10452 multidrug efflux system protein MdtJ; Provisional

Probab=96.40  E-value=0.0075  Score=48.70  Aligned_cols=65  Identities=15%  Similarity=0.160  Sum_probs=54.7

Q ss_pred             HHHH-HHHHHHHHHHhhccChhhHhHh-hcchhHHHHHHHHHHHhhcccccccccccchhhhhhhhhchhhee
Q 020034           83 SVFG-CSSQIFSFVGIQYSSPTLSTAM-LNLIPAFTFVLAIIFRLEKLNWENKSSQAKSLGTFASIGGAFVVT  153 (332)
Q Consensus        83 g~~g-~~~~~l~~~gl~~~sa~~A~~i-~~~~P~~~~lls~l~~~Ek~~~~~~~s~~~~~gi~l~l~Gv~ll~  153 (332)
                      .+.+ ...++++..++++.+.+.|=.+ ....-+.+++.++++++|+++++      |++|+.+.++|++.+-
T Consensus        36 ~i~~~~~sf~~ls~al~~lplsiAYavw~GiG~v~~~~ig~~~f~E~~s~~------~~~gi~lIi~GVi~l~  102 (120)
T PRK10452         36 MLVMISLSYIFLSFAVKKIALGVAYALWEGIGILFITLFSVLLFDESLSLM------KIAGLTTLVAGIVLIK  102 (120)
T ss_pred             HHHHHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHHHHhCCCCCHH------HHHHHHHHHHHHHHhh
Confidence            3444 7888999999999999888555 46788889999999999999886      4999999999998765

>KOG1441 consensus Glucose-6-phosphate/phosphate and phosphoenolpyruvate/phosphate antiporter [Carbohydrate transport and metabolism; Amino acid transport and metabolism]

Probab=96.38  E-value=0.0081  Score=56.54  Aligned_cols=138  Identities=16%  Similarity=0.159  Sum_probs=104.1

Q ss_pred             chhhHHHHHHHHHHHHHHHHHHHHHHH---hcCCChHHHHHHHHHHHHHHHH-HHHHHhhcCCC---C--CCCHHHHHHH
Q 020034            9 RAALPSVGMVIVLLAQVSNMEVIKAAM---SKGINKYVIIVYSDALSSLFFL-FCSFLFHRSER---P--QLTFSILCSF   79 (332)
Q Consensus         9 ~~~~~~l~ll~~~~~wg~~~~~~K~~l---~~~~~p~~~~~~R~~~a~i~ll-~~~~~~~r~~~---~--~~~~~~~~~l   79 (332)
                      -++.+.+...++.+..+.-.++.|..+   +.+++++.+..+---++.++++ |+....+....   .  ..+.+ ....
T Consensus       160 fn~~G~i~a~~s~~~~al~~I~~~~ll~~~~~~~~~~~ll~y~ap~s~~~Ll~P~~~~~~~~~~~~~~~~~~~~~-~~~~  238 (316)
T KOG1441|consen  160 FNLFGFISAMISNLAFALRNILSKKLLTSKGESLNSMNLLYYTAPISLIFLLIPFLDYVEGNKFVGFLTAPWFVT-FLIL  238 (316)
T ss_pred             ccHHHHHHHHHHHHHHHHHHHHHHHhhhccccccCchHHHHHhhhHHHHHHhcchHhhhcccceeeeeccccchh-hHHH
Confidence            367789999999999999999999988   3359999999999999999999 88665433222   1  12223 2333


Q ss_pred             HHHHHHHHHHHHHHHHHhhccChhhHhHhhcchhHHHHHHHHHHHhhcccccccccccchhhhhhhhhchhhee
Q 020034           80 FLLSVFGCSSQIFSFVGIQYSSPTLSTAMLNLIPAFTFVLAIIFRLEKLNWENKSSQAKSLGTFASIGGAFVVT  153 (332)
Q Consensus        80 ~~~g~~g~~~~~l~~~gl~~~sa~~A~~i~~~~P~~~~lls~l~~~Ek~~~~~~~s~~~~~gi~l~l~Gv~ll~  153 (332)
                      ...+++..+.+...|..+.++||-.=++....==..+.+.++++++|+++..+      ..|..++++|+.+..
T Consensus       239 ~~~sv~~f~~Nls~f~~ig~tSalT~~V~g~~K~~~vi~~s~~iF~~pvt~~n------~~G~~iai~Gv~~Y~  306 (316)
T KOG1441|consen  239 LLNSVLAFLLNLSAFLVIGRTSALTYSVAGHMKRIVVIVVSWLIFGNPVTFLN------ALGYAIAILGVFLYS  306 (316)
T ss_pred             HHHHHHHHHHHHHHHHHHcccCchhhhhhccceEEEEEEeEeeeecCCCchhh------HHHHHHHHHHHHHHH
Confidence            44446667777888999999998887777654444555678899999988765      999999999998743

>COG2076 EmrE Membrane transporters of cations and cationic drugs [Inorganic ion transport and metabolism]

Probab=96.36  E-value=0.007  Score=47.52  Aligned_cols=63  Identities=14%  Similarity=0.094  Sum_probs=53.4

Q ss_pred             HHH-HHHHHHHHHHhhccChhhH-hHhhcchhHHHHHHHHHHHhhcccccccccccchhhhhhhhhchhhe
Q 020034           84 VFG-CSSQIFSFVGIQYSSPTLS-TAMLNLIPAFTFVLAIIFRLEKLNWENKSSQAKSLGTFASIGGAFVV  152 (332)
Q Consensus        84 ~~g-~~~~~l~~~gl~~~sa~~A-~~i~~~~P~~~~lls~l~~~Ek~~~~~~~s~~~~~gi~l~l~Gv~ll  152 (332)
                      +.+ ...+.++-.++++.+.+.| ++....--+.+++.++++++|+++.+      |++|+.+.++|++.+
T Consensus        37 ~v~~~~sf~~Ls~alk~ipvgvAYAiW~GiG~v~~~l~g~~~f~E~l~~~------~~~gl~LiiaGvi~L  101 (106)
T COG2076          37 IVGYGLSFYLLSLALKTIPLGVAYAIWTGIGIVGTALVGVLLFGESLSLI------KLLGLALILAGVIGL  101 (106)
T ss_pred             HHHHHHHHHHHHHHHhhCchHHHHHHHHHHHHHHHHHHHHHhcCCcCCHH------HHHHHHHHHHHHHHh
Confidence            444 6788999999999998888 45566788889999999999999875      599999999999765

>PRK11431 multidrug efflux system protein; Provisional

Probab=96.28  E-value=0.012  Score=46.35  Aligned_cols=63  Identities=10%  Similarity=-0.042  Sum_probs=52.9

Q ss_pred             HHH-HHHHHHHHHHhhccChhhH-hHhhcchhHHHHHHHHHHHhhcccccccccccchhhhhhhhhchhhe
Q 020034           84 VFG-CSSQIFSFVGIQYSSPTLS-TAMLNLIPAFTFVLAIIFRLEKLNWENKSSQAKSLGTFASIGGAFVV  152 (332)
Q Consensus        84 ~~g-~~~~~l~~~gl~~~sa~~A-~~i~~~~P~~~~lls~l~~~Ek~~~~~~~s~~~~~gi~l~l~Gv~ll  152 (332)
                      +.+ ..++++...++++.|.+.| ++.....-+.+++.++++++|++++.|      ++|+.+.++|++.+
T Consensus        36 i~~~~~sf~~Ls~al~~ip~gvaYAvW~GiG~v~~~lig~~~f~e~~~~~~------~~gi~lIi~GVv~l  100 (105)
T PRK11431         36 VTAMIVSMALLAWAMKSLPVGTAYAVWTGIGAVGAAITGIVLLGESASPAR------LLSLALIVAGIIGL  100 (105)
T ss_pred             HHHHHHHHHHHHHHHhhCCcHhHHHHHHHHHHHHHHHHHHHHhCCCCCHHH------HHHHHHHHHHHHhh
Confidence            444 7888899999999998888 444567788899999999999998864      99999999999875

>PRK09541 emrE multidrug efflux protein; Reviewed

Probab=96.22  E-value=0.012  Score=46.77  Aligned_cols=65  Identities=15%  Similarity=0.235  Sum_probs=54.0

Q ss_pred             HHHH-HHHHHHHHHHhhccChhhHhHh-hcchhHHHHHHHHHHHhhcccccccccccchhhhhhhhhchhhee
Q 020034           83 SVFG-CSSQIFSFVGIQYSSPTLSTAM-LNLIPAFTFVLAIIFRLEKLNWENKSSQAKSLGTFASIGGAFVVT  153 (332)
Q Consensus        83 g~~g-~~~~~l~~~gl~~~sa~~A~~i-~~~~P~~~~lls~l~~~Ek~~~~~~~s~~~~~gi~l~l~Gv~ll~  153 (332)
                      .+.+ ...+.++..++++.|.+.|=.+ ....-+.+++.++++++|++++.|      ++|+.+.++|++.+-
T Consensus        36 ~~~~~~~sf~~l~~al~~ipl~iAYavw~GlG~v~~~l~g~~~f~e~~~~~~------~~gi~lIi~GVi~l~  102 (110)
T PRK09541         36 TIICYCASFWLLAQTLAYIPTGIAYAIWSGVGIVLISLLSWGFFGQRLDLPA------IIGMMLICAGVLVIN  102 (110)
T ss_pred             HHHHHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHHHHhCCCCCHHH------HHHHHHHHHHHHHHh
Confidence            3445 6788888999999998888555 557778889999999999998864      999999999998864

>PRK13499 rhamnose-proton symporter; Provisional

Probab=96.11  E-value=0.15  Score=48.64  Aligned_cols=145  Identities=12%  Similarity=0.035  Sum_probs=86.9

Q ss_pred             cchhhHHHHHHHHHHHHHHHH-------HHHHHHHhcCCChHHHHHHHHH---HHHHHHHH-HHHHh-hc-CCCC----C
Q 020034            8 MRAALPSVGMVIVLLAQVSNM-------EVIKAAMSKGINKYVIIVYSDA---LSSLFFLF-CSFLF-HR-SERP----Q   70 (332)
Q Consensus         8 ~~~~~~~l~ll~~~~~wg~~~-------~~~K~~l~~~~~p~~~~~~R~~---~a~i~ll~-~~~~~-~r-~~~~----~   70 (332)
                      .+..|+.+.++++.+..+...       +.-+.+.+.+.+|.....-.+.   +++.+.-. ++.+. +| +..+    +
T Consensus       170 ~~~~KGi~ialisgi~~~~f~~~~~~~~~~~~~a~~~g~~~~~~~lp~~~~~~~G~~~~n~~~~~~~~~k~~~~~~~~~~  249 (345)
T PRK13499        170 FNLKKGLILAVMSGIFSACFSFAMDAGKPMHEAAAALGVDPLYAALPSYVVIMGGGAITNLGFCFIRLAKNKDLSLKADF  249 (345)
T ss_pred             cchHhHHHHHHHHHHHHHHHHHHHhhccchhhhhhhcCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCcccchhc
Confidence            356789999999999988888       5555544456777776666665   44443332 22221 12 1110    1


Q ss_pred             C-CHHH-HHHHH---HHHHHHHHHHHHHHHHhhccChhhHhH---hh-cchhHHHHHHHHHHHhhcccccccccccchhh
Q 020034           71 L-TFSI-LCSFF---LLSVFGCSSQIFSFVGIQYSSPTLSTA---ML-NLIPAFTFVLAIIFRLEKLNWENKSSQAKSLG  141 (332)
Q Consensus        71 ~-~~~~-~~~l~---~~g~~g~~~~~l~~~gl~~~sa~~A~~---i~-~~~P~~~~lls~l~~~Ek~~~~~~~s~~~~~g  141 (332)
                      . +++. +..++   +.|++=+..+.++..|-+..+.+.+..   +. ++.-++..+-+. ++||+=+-.||.-+.-++|
T Consensus       250 ~~~~~~~~~n~l~~~l~G~~W~~~~~~y~~~~~~~g~~~~~~sw~l~m~~~ViistlwGi-~lkE~K~a~~k~~~~l~~G  328 (345)
T PRK13499        250 SLAKPLLITNVLLSALAGVMWYLQFFFYAMGHSKLGAQYDFVSWMLHMSFYVLCGNLWGL-VLKEWKGASRRPVRVLSLG  328 (345)
T ss_pred             cccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccchHHHHHhccHHHHHHHHhhh-hhhhccCCCccchhHHHHH
Confidence            1 1111 22333   333333566667777777775555544   55 555566666666 5899866334445677899


Q ss_pred             hhhhhhchhhee
Q 020034          142 TFASIGGAFVVT  153 (332)
Q Consensus       142 i~l~l~Gv~ll~  153 (332)
                      +++-++|++++.
T Consensus       329 ~vliI~g~~lig  340 (345)
T PRK13499        329 CVVIILAANIVG  340 (345)
T ss_pred             HHHHHHHHHHHh
Confidence            999999998765

>PF10639 UPF0546: Uncharacterised protein family UPF0546; InterPro: IPR018908 This family of proteins has no known function

Probab=96.08  E-value=0.016  Score=46.18  Aligned_cols=109  Identities=17%  Similarity=0.165  Sum_probs=69.2

Q ss_pred             HHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHH-HHHHHHHHHHH
Q 020034           18 VIVLLAQVSNMEVIKAAMSKGINKYVIIVYSDALSSLFFLFCSFLFHRSERPQLTFSILCSFFLLSVF-GCSSQIFSFVG   96 (332)
Q Consensus        18 l~~~~~wg~~~~~~K~~l~~~~~p~~~~~~R~~~a~i~ll~~~~~~~r~~~~~~~~~~~~~l~~~g~~-g~~~~~l~~~g   96 (332)
                      +++.++||..+++.|.+... .++..-.. |..--...+     +        .+++   +.  ..+. +-.....|++.
T Consensus         2 l~Vg~~WG~Tnpfik~g~~~-~~~~~~~~-~~~~~~~~L-----l--------~n~~---y~--ipf~lNq~GSv~f~~~   61 (113)
T PF10639_consen    2 LLVGILWGCTNPFIKRGSSG-LEKVKASL-QLLQEIKFL-----L--------LNPK---YI--IPFLLNQSGSVLFFLL   61 (113)
T ss_pred             eeehHHhcCchHHHHHHHhh-cCCccchH-HHHHHHHHH-----H--------HhHH---HH--HHHHHHHHHHHHHHHH
Confidence            45679999999999997653 44333221 322221111     0        1122   21  2333 35556778899


Q ss_pred             hhccChhhHhHhh-cchhHHHHHHHHHHHhhcccccccccccchhhhhhhhhchhhe
Q 020034           97 IQYSSPTLSTAML-NLIPAFTFVLAIIFRLEKLNWENKSSQAKSLGTFASIGGAFVV  152 (332)
Q Consensus        97 l~~~sa~~A~~i~-~~~P~~~~lls~l~~~Ek~~~~~~~s~~~~~gi~l~l~Gv~ll  152 (332)
                      +..++-+.+.-+. .+.=++|++.++++.+|..+++      .++|+.+.+.|+.+.
T Consensus        62 L~~~dlSlavPi~Nsl~fvfT~l~g~~lge~~~~~~------~~~G~~Li~~Gv~Lc  112 (113)
T PF10639_consen   62 LGSADLSLAVPIANSLAFVFTALTGWLLGEEVISRR------TWLGMALILAGVALC  112 (113)
T ss_pred             HhcCCceeeehHHhHHHHHHHHHHHHHhcCcccchh------HHHHHHHHHcCeeee
Confidence            9999999888887 4666778888877655554433      499999999998653

Many members are annotated as potential transmembrane proteins.

>TIGR00803 nst UDP-galactose transporter

Probab=96.01  E-value=0.072  Score=47.43  Aligned_cols=182  Identities=12%  Similarity=-0.023  Sum_probs=92.9

Q ss_pred             HhHhhcchhHHHHHHHHHHHhhcccccccccccchhhhhhhhhchhheeecc-----------CCCCcCCCCCCCCCccc
Q 020034          105 STAMLNLIPAFTFVLAIIFRLEKLNWENKSSQAKSLGTFASIGGAFVVTFYK-----------GPPLIGELSHSGSPRRL  173 (332)
Q Consensus       105 A~~i~~~~P~~~~lls~l~~~Ek~~~~~~~s~~~~~gi~l~l~Gv~ll~~~~-----------g~~~~~~~~~~~~~~~~  173 (332)
                      ....-+..|+++++..+.+.+||.+.      .|++++.+...|++.-...+           |....  +.+...+   
T Consensus         7 ~~~~~s~~l~~v~l~~~~~~~~~~~~------~~i~~~~l~~~g~l~~~ls~~q~~al~~l~~~~~~~--~~~~~~~---   75 (222)
T TIGR00803         7 HIIFKQNNLVLIALGNLLAAGKQVTQ------LKILSTALMTLGSLVASLGDDQWFSLKLLKLGVAIV--QMVQSSA---   75 (222)
T ss_pred             hHHHHhcchHHHHHhcccccceeeeh------HHHHHHHHHHHHHHHhHhhHHHHHHHHHHHHhHeee--ecCCCCc---
Confidence            34455677777777777777776652      35777777777765311100           00000  0000000   


Q ss_pred             cCCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHH-HHHHHHHHHHHHHHHcCC-CCCccc--cchhhh
Q 020034          174 LLSPQLSWILGGFFLAAEAFMNSAWFILQALILRKFAAVLIIMFYL-FFFNTILSTAFALIVVSE-PSDWKL--GLDIGL  249 (332)
Q Consensus       174 ~~~~~~~~~~G~~l~L~aa~~~A~~~v~~~~~~~~~~~~~~i~~~~-~l~g~i~~~~~~~~~~~~-~~~~~~--~~~~~~  249 (332)
                      ......+...|....+.++++-+...+.+++..++.+........+ .+.+.+............ ..++..  ......
T Consensus        76 ~~~~~g~~~~g~~~~l~a~~~~~~~~~y~e~~~k~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  155 (222)
T TIGR00803        76 KTLMFGNPVVGLSAVLSALLSSGFAGVYFEKILKDGDTMFWSRNLQLPLFGLFSTFSVLLWSDGTLISNFGFFIGYPTAV  155 (222)
T ss_pred             cccccccHHHHHHHHHHHHHHHhhhHHHHHHcccCCCCchHHHHHHHHHHHHHHHHHHHhhcccchhhccCcccCCchHH
Confidence            0001113456777777777777777777777655432111111111 122222111111111110 111110  011112


Q ss_pred             HHHHhhhhhhHHHHHHHHhhcc-h--hhhhcchHHHHHHHHHHHHhCCCccc
Q 020034          250 VAVLYSVSSYWHWVSSWLVHMV-P--VENWTSLCINVQALGHCLLYCHGCRH  298 (332)
Q Consensus       250 ~~ll~~gt~v~~~l~~~a~~~~-~--~s~~~~l~pv~~~i~~~l~lgE~~~~  298 (332)
                      +.++.. ..++..+..+.+++. +  .+....++++++.+++++++||+++.
T Consensus       156 ~~~~~~-~a~~~~~v~~vlk~~~~~~~~~~~~~~~~~s~lls~~~f~~~ls~  206 (222)
T TIGR00803       156 WIVGLL-NVGGGLCIGGVVRYADNTTKSFVTALSIILSTLASVRLFDAKISS  206 (222)
T ss_pred             HHHHHH-HHhcCceeeehhHHhHHHHHHHHHHHHHHHHHHHHHHHhcCCccH
Confidence            222222 456666788888999 6  88889999999999999999999974

NSTs generally appear to function by antiport mechanisms, exchanging a nucleotide-sugar for a nucleotide. Thus, CMP-sialic acid is exchanged for CMP; GDP-mannose is preferentially exchanged for GMP, and UDP-galactose and UDP-N-acetylglucosamine are exchanged for UMP (or possibly UDP). Other nucleotide sugars (e.g., GDP-fucose, UDP-xylose, UDP-glucose, UDP-N-acetylgalactosamine, etc.) may also be transported in exchange for various nucleotides, but their transporters have not been molecularly characterized. Each compound appears to be translocated by its own transport protein. Transport allows the compound, synthesized in the cytoplasm, to be exported to the lumen of the Golgi apparatus or the endoplasmic reticulum where it is used for the synthesis of glycoproteins and glycolipids.

>PF13536 EmrE: Multidrug resistance efflux transporter

Probab=95.71  E-value=0.034  Score=44.17  Aligned_cols=42  Identities=14%  Similarity=-0.024  Sum_probs=37.8

Q ss_pred             hhhHHHHHHHHhhcc-h-hhhhcchHHHHHHHHHHHHhCCCccc
Q 020034          257 SSYWHWVSSWLVHMV-P-VENWTSLCINVQALGHCLLYCHGCRH  298 (332)
Q Consensus       257 t~v~~~l~~~a~~~~-~-~s~~~~l~pv~~~i~~~l~lgE~~~~  298 (332)
                      ..+++.++.++.+.. + +++...+.|++++++++++++|+++.
T Consensus        45 ~~~~~~~~~~a~~~~~~~v~~i~~~~pi~~~ll~~~~~~er~~~   88 (113)
T PF13536_consen   45 FGVAYLLFFYALSYAPALVAAIFSLSPIFTALLSWLFFKERLSP   88 (113)
T ss_pred             HHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHhcCCCCH
Confidence            347899999999999 5 88899999999999999999999974

>COG2962 RarD Predicted permeases [General function prediction only]

Probab=95.58  E-value=0.31  Score=44.98  Aligned_cols=123  Identities=11%  Similarity=0.007  Sum_probs=83.9

Q ss_pred             HHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHhhcCCC--CCCCHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 020034           21 LLAQVSNMEVIKAAMSKGINKYVIIVYSDALSSLFFLFCSFLFHRSER--PQLTFSILCSFFLLSVFGCSSQIFSFVGIQ   98 (332)
Q Consensus        21 ~~~wg~~~~~~K~~l~~~~~p~~~~~~R~~~a~i~ll~~~~~~~r~~~--~~~~~~~~~~l~~~g~~g~~~~~l~~~gl~   98 (332)
                      ++-|+..+..=|..   ++|+.+-...-...-...-+...++......  ..-+.+.+..+...|........++..|-+
T Consensus       157 a~sf~~Ygl~RK~~---~v~a~~g~~lE~l~l~p~al~yl~~l~~~~~~~~~~~~~~~~LLv~aG~vTavpL~lf~~aa~  233 (293)
T COG2962         157 ALSFGLYGLLRKKL---KVDALTGLTLETLLLLPVALIYLLFLADSGQFLQQNANSLWLLLVLAGLVTAVPLLLFAAAAK  233 (293)
T ss_pred             HHHHHHHHHHHHhc---CCchHHhHHHHHHHHhHHHHHHHHHHhcCchhhhcCCchHHHHHHHhhHHHHHHHHHHHHHHh
Confidence            34456666555542   3666665555544444433333333222110  112346677788888888899999999999


Q ss_pred             ccChhhHhHhhcchhHHHHHHHHHHHhhcccccccccccchhhhhhhhhchhhe
Q 020034           99 YSSPTLSTAMLNLIPAFTFVLAIIFRLEKLNWENKSSQAKSLGTFASIGGAFVV  152 (332)
Q Consensus        99 ~~sa~~A~~i~~~~P~~~~lls~l~~~Ek~~~~~~~s~~~~~gi~l~l~Gv~ll  152 (332)
                      +.+-+.-++++|..|.+..+++.++++|+++..|      ..+-+..-.|.++.
T Consensus       234 ~lpls~~G~lqYi~Ptl~fllav~i~~E~~~~~~------~~~F~~IW~aL~l~  281 (293)
T COG2962         234 RLPLSTLGFLQYIEPTLMFLLAVLIFGEPFDSDQ------LVTFAFIWLALALF  281 (293)
T ss_pred             cCCHHHHHHHHHHHHHHHHHHHHHHcCCCCCHHH------HHHHHHHHHHHHHH
Confidence            9999999999999999999999999999998754      56666656665544

>KOG1582 consensus UDP-galactose transporter related protein [Carbohydrate transport and metabolism]

Probab=95.57  E-value=0.1  Score=47.77  Aligned_cols=262  Identities=11%  Similarity=0.071  Sum_probs=148.1

Q ss_pred             ccchhhHHHHHHHHHHH-HHHHHHHHHHHHh-cCCCh--HHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHH
Q 020034            7 SMRAALPSVGMVIVLLA-QVSNMEVIKAAMS-KGINK--YVIIVYSDALSSLFFLFCSFLFHRSERPQLTFSILCSFFLL   82 (332)
Q Consensus         7 ~~~~~~~~l~ll~~~~~-wg~~~~~~K~~l~-~~~~p--~~~~~~R~~~a~i~ll~~~~~~~r~~~~~~~~~~~~~l~~~   82 (332)
                      ..+||+.++....+.++ +=.+...-..... .++.|  ..++..+++.-+.+-+.-.... +.+++..++|....   +
T Consensus        37 ~kpkw~QFlic~~g~Ff~Yl~yGy~qElif~~~gfkp~GWylTlvQf~~Ysg~glie~~~~-~~k~r~iP~rtY~~---l  112 (367)
T KOG1582|consen   37 DKPKWTQFLICSAGVFFLYLVYGYLQELIFNVEGFKPFGWYLTLVQFLVYSGFGLIELQLI-QTKRRVIPWRTYVI---L  112 (367)
T ss_pred             cCchhhhHHHHHhHHHHHHHHHHHHHHHHhccccCcccchHHHHHHHHHHHhhhheEEEee-cccceecchhHhhh---h
Confidence            34677777766554433 2333344443332 24665  3577777777655544322211 22223345664333   3


Q ss_pred             HHHHHHHHHHHHHHhhccChhhHhHhh--cchhHHHHHHHHHHHhhcccccccccccchhhhhhhhhchhheeeccCCCC
Q 020034           83 SVFGCSSQIFSFVGIQYSSPTLSTAML--NLIPAFTFVLAIIFRLEKLNWENKSSQAKSLGTFASIGGAFVVTFYKGPPL  160 (332)
Q Consensus        83 g~~g~~~~~l~~~gl~~~sa~~A~~i~--~~~P~~~~lls~l~~~Ek~~~~~~~s~~~~~gi~l~l~Gv~ll~~~~g~~~  160 (332)
                      +.+-...+.+...++.|.+=..-.++-  -+.|+++  .+.++-+.|      +..+..++..+-.+|.+.-.+.+... 
T Consensus       113 a~~t~gtmGLsn~SlgYLNYPtQviFKccKliPVmi--ggifIqGkR------Y~v~d~~aA~lm~lGli~FTLADs~~-  183 (367)
T KOG1582|consen  113 AFLTVGTMGLSNGSLGYLNYPTQVIFKCCKLIPVMI--GGIFIQGKR------YGVHDYIAAMLMSLGLIWFTLADSQT-  183 (367)
T ss_pred             HhhhhhccccCcCccccccCcHHHHHHhhhhhhhhh--eeeeecccc------ccHHHHHHHHHHHHHHHhhhhccccc-
Confidence            344345555555555554332222222  2556543  555554444      44566888888888987765432211 


Q ss_pred             cCCCCCCCCCccccCCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHhcc-hHHHHHHHHHHHHHHHHHHHHHHHcCCCC
Q 020034          161 IGELSHSGSPRRLLLSPQLSWILGGFFLAAEAFMNSAWFILQALILRKFA-AVLIIMFYLFFFNTILSTAFALIVVSEPS  239 (332)
Q Consensus       161 ~~~~~~~~~~~~~~~~~~~~~~~G~~l~L~aa~~~A~~~v~~~~~~~~~~-~~~~i~~~~~l~g~i~~~~~~~~~~~~~~  239 (332)
                                     .++.+ ..|....-.|-++=|.-.-.|.+..+.++ +...+.++...+|.+.++.....++.-.+
T Consensus       184 ---------------sPNF~-~~Gv~mIsgALl~DA~iGNvQEk~m~~~~~ss~EmvfySy~iG~vflf~~mvlTge~f~  247 (367)
T KOG1582|consen  184 ---------------SPNFN-LIGVMMISGALLADAVIGNVQEKAMKMNPASSSEMVFYSYGIGFVFLFAPMVLTGELFS  247 (367)
T ss_pred             ---------------CCCcc-eeeHHHHHHHHHHHHHhhHHHHHHHhhCCCCcceEEEeeecccHHHHHHHHHhcccchh
Confidence                           11223 46888888888888887778888877764 44566778888888887776666655455


Q ss_pred             Ccccc---chhhhHHHHhhh--hhhHHHHHHHHhhcc-h--hhhhcchHHHHHHHHHHHHhCCCcc
Q 020034          240 DWKLG---LDIGLVAVLYSV--SSYWHWVSSWLVHMV-P--VENWTSLCINVQALGHCLLYCHGCR  297 (332)
Q Consensus       240 ~~~~~---~~~~~~~ll~~g--t~v~~~l~~~a~~~~-~--~s~~~~l~pv~~~i~~~l~lgE~~~  297 (332)
                      .|+.-   +..-.....+..  +.++...-...++.. +  ++......--++.+++++++..+++
T Consensus       248 a~~fcaehp~~tyGy~~~~s~~gylG~~~VLalI~~fGA~~aatvTTaRKavTi~lSfllFsKPfT  313 (367)
T KOG1582|consen  248 AWTFCAEHPVRTYGYAFLFSLAGYLGIVFVLALIKLFGALIAATVTTARKAVTILLSFLLFSKPFT  313 (367)
T ss_pred             hhHHHHhCcHhHHHHHHHHHHHhHhhHHHHHHHHHHhchhHHHHHHHhHhHHHHHHHHHHHcCchH
Confidence            55431   111112222221  334444433445555 4  7777888888999999999999986

>PF04657 DUF606: Protein of unknown function, DUF606; InterPro: IPR006750 This family contains uncharacterised bacterial proteins

Probab=95.57  E-value=0.25  Score=40.86  Aligned_cols=107  Identities=14%  Similarity=0.144  Sum_probs=70.9

Q ss_pred             ChHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhhccChhhHhHhhcchhHHH-HH
Q 020034           40 NKYVIIVYSDALSSLFFLFCSFLFHRSERPQLTFSILCSFFLLSVFGCSSQIFSFVGIQYSSPTLSTAMLNLIPAFT-FV  118 (332)
Q Consensus        40 ~p~~~~~~R~~~a~i~ll~~~~~~~r~~~~~~~~~~~~~l~~~g~~g~~~~~l~~~gl~~~sa~~A~~i~~~~P~~~-~l  118 (332)
                      +|..-++.-+..+.+.+..+....+++..+..+...| +...-|++|...-.+..+.++..+++.+..+.-+.=+.+ .+
T Consensus        29 s~~~as~i~~~~G~i~~~i~~~~~~~~~~~~~~~~p~-w~~lGG~lG~~~V~~~~~~vp~lG~~~~~~l~~~GQl~~sl~  107 (138)
T PF04657_consen   29 SPLVASFISFGVGFILLLIILLITGRPSLASLSSVPW-WAYLGGLLGVFFVLSNIILVPRLGAALTTILIVAGQLIASLL  107 (138)
T ss_pred             ccHHHHHHHHHHHHHHHHHHHHHhcccccchhccCCh-HHhccHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHH
Confidence            5999999999999999988776654432222221122 334488999888888889999999998877754433333 33


Q ss_pred             HHHH--HHhhcccccccccccchhhhhhhhhchhh
Q 020034          119 LAII--FRLEKLNWENKSSQAKSLGTFASIGGAFV  151 (332)
Q Consensus       119 ls~l--~~~Ek~~~~~~~s~~~~~gi~l~l~Gv~l  151 (332)
                      +..+  +-.|    |++.+..|.+|+.+.++|+++
T Consensus       108 iD~fG~fg~~----~~~~~~~r~lG~~l~i~Gv~L  138 (138)
T PF04657_consen  108 IDHFGLFGAP----KRPFSLRRILGLALMIAGVIL  138 (138)
T ss_pred             HHHccccCCC----CCCCCHHHHHHHHHHHHHHhC
Confidence            3332  1112    233345679999999999863

>PF00893 Multi_Drug_Res: Small Multidrug Resistance protein; InterPro: IPR000390 Members of this family which have been characterised, belong to the small multidrug resistance (Smr) protein family and are integral membrane proteins

Probab=95.46  E-value=0.036  Score=42.63  Aligned_cols=56  Identities=18%  Similarity=0.110  Sum_probs=32.4

Q ss_pred             HHHH-HHHHHHHHHHhhccChhhH-hHhhcchhHHHHHHHHHHHhhcccccccccccchhhhhh
Q 020034           83 SVFG-CSSQIFSFVGIQYSSPTLS-TAMLNLIPAFTFVLAIIFRLEKLNWENKSSQAKSLGTFA  144 (332)
Q Consensus        83 g~~g-~~~~~l~~~gl~~~sa~~A-~~i~~~~P~~~~lls~l~~~Ek~~~~~~~s~~~~~gi~l  144 (332)
                      .+.+ ...+.++..++++.+.+.| .+...+..+.+++.+.++++|+++.+|      ++|+.+
T Consensus        35 ~~~~~~~s~~~l~~al~~lp~~vaYavw~g~g~v~~~~~~~~~f~E~~s~~~------~~gi~l   92 (93)
T PF00893_consen   35 AVVGYGLSFYFLSLALKKLPLSVAYAVWTGLGIVGVTLVGVFFFGESLSLSK------WLGIGL   92 (93)
T ss_dssp             HHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHH--------------HHHHHH
T ss_pred             HHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHhCCCCCHHH------Hhheee
Confidence            3334 7788899999999999999 445568899999999999999999865      777654

They confer resistance to a wide range of toxic compounds by removing them for the cells. The efflux is coupled to an influx of protons. An example is Escherichia coli mvrC P23895 from SWISSPROT which prevents the incorporation of methyl viologen into cells [] and is involved in ethidium bromide efflux [].; GO: 0016021 integral to membrane; PDB: 2I68_A.

>COG5070 VRG4 Nucleotide-sugar transporter [Carbohydrate transport and metabolism / Posttranslational modification, protein turnover, chaperones / Intracellular trafficking and secretion]

Probab=95.09  E-value=0.22  Score=44.28  Aligned_cols=245  Identities=16%  Similarity=0.130  Sum_probs=143.2

Q ss_pred             HHHHHHHhc-CCC-hHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhhccChhhHh
Q 020034           29 EVIKAAMSK-GIN-KYVIIVYSDALSSLFFLFCSFLFHRSERPQLTFSILCSFFLLSVFGCSSQIFSFVGIQYSSPTLST  106 (332)
Q Consensus        29 ~~~K~~l~~-~~~-p~~~~~~R~~~a~i~ll~~~~~~~r~~~~~~~~~~~~~l~~~g~~g~~~~~l~~~gl~~~sa~~A~  106 (332)
                      +.-|..++. +++ -+.+.+.+.+...+-+..+-+...-+.| ..+.+.|   +..+++-....+.--.+++|.+...=+
T Consensus        23 ltNKyVls~~gfnMnflll~vQSlvcvv~l~iLk~l~~~~fR-~t~aK~W---fpiSfLLv~MIyt~SKsLqyL~vpiYT   98 (309)
T COG5070          23 LTNKYVLSNLGFNMNFLLLAVQSLVCVVGLLILKFLRLVEFR-LTKAKKW---FPISFLLVVMIYTSSKSLQYLAVPIYT   98 (309)
T ss_pred             HhhHheecCCCCchhhHHHHHHHHHHHHHHHHHHHHhHhhee-hhhhhhh---cCHHHHHHHHHHhcccceeeeeeeHHH
Confidence            345665542 222 3455666766665555443222111111 1122333   334444444445556789999999999


Q ss_pred             HhhcchhHHHHHHHHHHHhhcccccccccccchhhhhhhhhchhheeeccCCCCcCCCCCCCCCccccCCCCCcchhHHH
Q 020034          107 AMLNLIPAFTFVLAIIFRLEKLNWENKSSQAKSLGTFASIGGAFVVTFYKGPPLIGELSHSGSPRRLLLSPQLSWILGGF  186 (332)
Q Consensus       107 ~i~~~~P~~~~lls~l~~~Ek~~~~~~~s~~~~~gi~l~l~Gv~ll~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~G~~  186 (332)
                      ++-++..+.++..-.++++.|++--      .....++-++.-+.-.  .|+. .           +........+.|-+
T Consensus        99 iFKNltII~iAygEvl~Fgg~vtsl------~l~SFilMvlSS~va~--w~D~-q-----------~~~~~~~~lN~GY~  158 (309)
T COG5070          99 IFKNLTIILIAYGEVLFFGGRVTSL------ELLSFILMVLSSVVAT--WGDQ-Q-----------ASAFKAQILNPGYL  158 (309)
T ss_pred             HhccceeehhHhhHHHHhcCccchh------hHHHHHHHHHHHHHhc--cchh-h-----------HHHHHhcccCCceE
Confidence            9999999999999999999988643      2444444444443322  1211 0           00111123467888


Q ss_pred             HHHHHHHHHHHHHHHHHHHHH--hcchHHHHHHHHHHHHHHHHHHHHHHHcCC-CCCccc-cchhhhHHHHhhh--hhhH
Q 020034          187 FLAAEAFMNSAWFILQALILR--KFAAVLIIMFYLFFFNTILSTAFALIVVSE-PSDWKL-GLDIGLVAVLYSV--SSYW  260 (332)
Q Consensus       187 l~L~aa~~~A~~~v~~~~~~~--~~~~~~~i~~~~~l~g~i~~~~~~~~~~~~-~~~~~~-~~~~~~~~ll~~g--t~v~  260 (332)
                      +....+++-|.|.+..|+..+  +..|..+ .+|..+.+..+++.+++++|.. +.+..- .....+.++...|  +..-
T Consensus       159 Wm~~NclssaafVL~mrkri~ltNf~d~dt-mfYnNllslPiL~~~s~~~edws~~n~annl~~d~l~am~ISgl~svgi  237 (309)
T COG5070         159 WMFTNCLSSAAFVLIMRKRIKLTNFKDFDT-MFYNNLLSLPILLSFSFLFEDWSPGNLANNLSVDSLMAMFISGLCSVGI  237 (309)
T ss_pred             EEehhhHhHHHHHHHHHHhhcccccchhhH-HHHhhhHHHHHHHHHHHHhccCCcchhhcCCChHHHHHHHHHHHHHhhh
Confidence            889999999999887776533  3334333 5788899999988888887642 221110 0112233444444  2111


Q ss_pred             HHHHHHHhhcc-h--hhhhcchHHHHHHHHHHHHhCCCccc
Q 020034          261 HWVSSWLVHMV-P--VENWTSLCINVQALGHCLLYCHGCRH  298 (332)
Q Consensus       261 ~~l~~~a~~~~-~--~s~~~~l~pv~~~i~~~l~lgE~~~~  298 (332)
                      -.+-.|+++.. +  -++...+.-.-..+.|.+++||+.++
T Consensus       238 Sy~saWcvrVtSSTtySMvGALNKlp~alaGlvffdap~nf  278 (309)
T COG5070         238 SYCSAWCVRVTSSTTYSMVGALNKLPIALAGLVFFDAPVNF  278 (309)
T ss_pred             hhccceeEeehhhhHHHHHHHhhhChHHHhhhhhcCCchhH
Confidence            23455778777 4  67777777777789999999999863

>KOG2765 consensus Predicted membrane protein [Function unknown]

Probab=94.44  E-value=0.31  Score=46.52  Aligned_cols=140  Identities=11%  Similarity=0.142  Sum_probs=100.7

Q ss_pred             cchhhHHHHHHHHHHHHHHHHHHHHHHHhcC---CChHHHHHHHHHHHHHHHHHHHHHhhcCCCCC---CCHHHHHHHHH
Q 020034            8 MRAALPSVGMVIVLLAQVSNMEVIKAAMSKG---INKYVIIVYSDALSSLFFLFCSFLFHRSERPQ---LTFSILCSFFL   81 (332)
Q Consensus         8 ~~~~~~~l~ll~~~~~wg~~~~~~K~~l~~~---~~p~~~~~~R~~~a~i~ll~~~~~~~r~~~~~---~~~~~~~~l~~   81 (332)
                      .+...+-++.+++++++|...++.|.-.+++   +|--.+..+=-++..++++|..++..+..+++   .+......++.
T Consensus       243 ~~~llG~llaL~sA~~YavY~vllk~~~~~eg~rvdi~lffGfvGLfnllllwP~l~iL~~~~~e~F~lP~~~q~~~vv~  322 (416)
T KOG2765|consen  243 SRPLLGNLLALLSALLYAVYTVLLKRKIGDEGERVDIQLFFGFVGLFNLLLLWPPLIILDFFGEERFELPSSTQFSLVVF  322 (416)
T ss_pred             cchhHHHHHHHHHHHHHHHHHHHHHhhcccccccccHHHHHHHHHHHHHHHHhHHHHHHHHhccCcccCCCCceeEeeeH
Confidence            4556788999999999999999999865532   56555666666777778887666543322222   12334455677


Q ss_pred             HHHHH-HHHHHHHHHHhhccChhhHhHhhcchhHHHHHHHHHHHhhcccccccccccchhhhhhhhhchhhee
Q 020034           82 LSVFG-CSSQIFSFVGIQYSSPTLSTAMLNLIPAFTFVLAIIFRLEKLNWENKSSQAKSLGTFASIGGAFVVT  153 (332)
Q Consensus        82 ~g~~g-~~~~~l~~~gl~~~sa~~A~~i~~~~P~~~~lls~l~~~Ek~~~~~~~s~~~~~gi~l~l~Gv~ll~  153 (332)
                      .+++| ++.=++|..|.-.|++-.+++=+.+.....++.-.++.+.+      ++...++|.+..+.|-+++.
T Consensus       323 ~~ligtvvSDylW~~a~~lTs~Lv~TlgmSltIPLA~~aD~l~k~~~------~S~~~iiGsi~Ifv~Fv~vn  389 (416)
T KOG2765|consen  323 NNLIGTVVSDYLWAKAVLLTSPLVVTLGMSLTIPLAMFADVLIKGKH------PSALYIIGSIPIFVGFVIVN  389 (416)
T ss_pred             hhHHHHHHHHHHHHHHHHhccchhheeeeeEeeeHHHHHHHHHcCCC------CCHHHHHHHHHHHHHHhhee
Confidence            88999 99999999999999999999888766555666666654333      45567999998888887664

>COG4975 GlcU Putative glucose uptake permease [Carbohydrate transport and metabolism]

Probab=93.99  E-value=0.0074  Score=54.20  Aligned_cols=252  Identities=13%  Similarity=0.086  Sum_probs=141.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHHHHHHHHH
Q 020034           13 PSVGMVIVLLAQVSNMEVIKAAMSKGINKYVIIVYSDALSSLFFLFCSFLFHRSERPQLTFSILCSFFLLSVFGCSSQIF   92 (332)
Q Consensus        13 ~~l~ll~~~~~wg~~~~~~K~~l~~~~~p~~~~~~R~~~a~i~ll~~~~~~~r~~~~~~~~~~~~~l~~~g~~g~~~~~l   92 (332)
                      .++..++=++.||+...+....   +=+|.+=.--- .++++++..+.+++.   .|..+.+.+..-++.|++=.+.|..
T Consensus         3 ~~liaL~P~l~WGsip~v~~k~---GG~p~qQ~lGt-T~GALifaiiv~~~~---~p~~T~~~~iv~~isG~~Ws~GQ~~   75 (288)
T COG4975           3 DLLIALLPALGWGSIPLVANKF---GGKPYQQTLGT-TLGALIFAIIVFLFV---SPELTLTIFIVGFISGAFWSFGQAN   75 (288)
T ss_pred             hHHHHHHHHHHhcccceeeeec---CCChhHhhhhc-cHHHHHHHHHHheee---cCccchhhHHHHHHhhhHhhhhhhh
Confidence            4567778899999998875542   23444433322 333333333333332   3455666666656666555788899


Q ss_pred             HHHHhhccChhhHhHhhc-chhHHHHHHHHHHHhhcccccccccccchhhhhhhhhchhheeeccCCCCcCCCCCCCCCc
Q 020034           93 SFVGIQYSSPTLSTAMLN-LIPAFTFVLAIIFRLEKLNWENKSSQAKSLGTFASIGGAFVVTFYKGPPLIGELSHSGSPR  171 (332)
Q Consensus        93 ~~~gl~~~sa~~A~~i~~-~~P~~~~lls~l~~~Ek~~~~~~~s~~~~~gi~l~l~Gv~ll~~~~g~~~~~~~~~~~~~~  171 (332)
                      ++.++++.+.++|-=+.+ ..=+-+.+++.+.++|.-+..+.  ....+++++.++|+.+-..  .++.+.         
T Consensus        76 Qfka~~~iGVSkamPiStG~QLVg~sL~gV~~f~EW~t~~~~--IlG~iAliliviG~~lTs~--~~~~nk---------  142 (288)
T COG4975          76 QFKAIQLIGVSKAMPISTGMQLVGTSLFGVFVFHEWTTPTQI--ILGFIALILIVIGIYLTSK--QDRNNK---------  142 (288)
T ss_pred             hhhheeeeeeeccccccchhhHhhceeeeEEEEeccCcchhH--HHHHHHHHHHHHhheEeee--eccccc---------
Confidence            999999999999866654 45566677888999997655431  1234556667777765432  111110         


Q ss_pred             cccCCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHH---HHHHHHHHHHHHHHHc-CCCCCccccchh
Q 020034          172 RLLLSPQLSWILGGFFLAAEAFMNSAWFILQALILRKFAAVLIIMFYL---FFFNTILSTAFALIVV-SEPSDWKLGLDI  247 (332)
Q Consensus       172 ~~~~~~~~~~~~G~~l~L~aa~~~A~~~v~~~~~~~~~~~~~~i~~~~---~l~g~i~~~~~~~~~~-~~~~~~~~~~~~  247 (332)
                        +.++..+.-.|...++.+.+.|..|.++.+...  . |..+...=|   +.++++.+   ...-+ .......+  ..
T Consensus       143 --~~~~~~n~kkgi~~L~iSt~GYv~yvvl~~~f~--v-~g~saiLPqAiGMv~~ali~---~~~~~~~~~~K~t~--~n  212 (288)
T COG4975         143 --EEENPSNLKKGIVILLISTLGYVGYVVLFQLFD--V-DGLSAILPQAIGMVIGALIL---GFFKMEKRFNKYTW--LN  212 (288)
T ss_pred             --cccChHhhhhheeeeeeeccceeeeEeeecccc--c-cchhhhhHHHHHHHHHHHHH---hhcccccchHHHHH--HH
Confidence              112233456788888999999999999866442  3 234433333   33333332   22211 11111111  01


Q ss_pred             hhHHHHhhhhhhHHHHHHHHhhcc-hhhhhcc--hHHHHHHHHHHHHhCCCcc
Q 020034          248 GLVAVLYSVSSYWHWVSSWLVHMV-PVENWTS--LCINVQALGHCLLYCHGCR  297 (332)
Q Consensus       248 ~~~~ll~~gt~v~~~l~~~a~~~~-~~s~~~~--l~pv~~~i~~~l~lgE~~~  297 (332)
                      -...+.+   +.+-..+..+.++. -+..++.  +.-+++++-|.++++|.=+
T Consensus       213 ii~G~~W---a~GNl~ml~a~~~~GvAt~FSlSQlgViisTiGGIl~L~ekKt  262 (288)
T COG4975         213 IIPGLIW---AIGNLFMLLAAQKVGVATSFSLSQLGVIISTIGGILFLGEKKT  262 (288)
T ss_pred             HhhHHHH---HhhHHHHHHhhhhhceeeeeeHhhheeeeeecceEEEEeccCc
Confidence            1222222   24445555566665 2333333  3467788888999999844

>PRK15051 4-amino-4-deoxy-L-arabinose-phosphoundecaprenol flippase subunit ArnE; Provisional

Probab=93.71  E-value=0.34  Score=38.52  Aligned_cols=42  Identities=14%  Similarity=0.002  Sum_probs=35.9

Q ss_pred             hhhHHHHHHHHhhcch---hhhhcchHHHHHHHHHHHHhCCCccc
Q 020034          257 SSYWHWVSSWLVHMVP---VENWTSLCINVQALGHCLLYCHGCRH  298 (332)
Q Consensus       257 t~v~~~l~~~a~~~~~---~s~~~~l~pv~~~i~~~l~lgE~~~~  298 (332)
                      .++++.++..++++.|   +.....+.+++++++|++++||+++.
T Consensus        47 ~~l~~~~~~~al~~iplg~Ay~~~~l~~v~~~~~~~l~f~E~ls~   91 (111)
T PRK15051         47 LGLAMVLWLLVLQNVPVGIAYPMLSLNFVWVTLAAVKLWHEPVSP   91 (111)
T ss_pred             HHHHHHHHHHHHhhCChHHHHHHHHHHHHHHHHHHHHHhCCCCCH
Confidence            4578889999999995   55666699999999999999999974

>KOG4510 consensus Permease of the drug/metabolite transporter (DMT) superfamily [General function prediction only]

Probab=93.60  E-value=0.048  Score=49.70  Aligned_cols=133  Identities=17%  Similarity=0.137  Sum_probs=85.5

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHHHHHHHH
Q 020034           12 LPSVGMVIVLLAQVSNMEVIKAAMSKGINKYVIIVYSDALSSLFFLFCSFLFHRSERPQLTFSILCSFFLLSVFGCSSQI   91 (332)
Q Consensus        12 ~~~l~ll~~~~~wg~~~~~~K~~l~~~~~p~~~~~~R~~~a~i~ll~~~~~~~r~~~~~~~~~~~~~l~~~g~~g~~~~~   91 (332)
                      ++....+.+++.-++-.+..|.. ....+.+....+=..++.+.-+........-..| ..+++++.+..+|++|.++|+
T Consensus       191 ~gt~aai~s~lf~asvyIilR~i-Gk~~h~~msvsyf~~i~lV~s~I~~~~ig~~~lP-~cgkdr~l~~~lGvfgfigQI  268 (346)
T KOG4510|consen  191 PGTVAAISSVLFGASVYIILRYI-GKNAHAIMSVSYFSLITLVVSLIGCASIGAVQLP-HCGKDRWLFVNLGVFGFIGQI  268 (346)
T ss_pred             CchHHHHHhHhhhhhHHHHHHHh-hccccEEEEehHHHHHHHHHHHHHHhhccceecC-ccccceEEEEEehhhhhHHHH
Confidence            34555555555556666666654 2223333333333333333222221111111223 456677788889999999999


Q ss_pred             HHHHHhhccChhhHhHhhcchhHHHHHHHHHHHhhcccccccccccchhhhhhhhhchhhe
Q 020034           92 FSFVGIQYSSPTLSTAMLNLIPAFTFVLAIIFRLEKLNWENKSSQAKSLGTFASIGGAFVV  152 (332)
Q Consensus        92 l~~~gl~~~sa~~A~~i~~~~P~~~~lls~l~~~Ek~~~~~~~s~~~~~gi~l~l~Gv~ll  152 (332)
                      +...|+|.--++-.++..++.-+++.+.-.+|++|..++      +.|.|.++.+...+..
T Consensus       269 llTm~lQiErAGpvaim~~~dvvfAf~wqv~ff~~~Pt~------ws~~Ga~~vvsS~v~~  323 (346)
T KOG4510|consen  269 LLTMGLQIERAGPVAIMTYTDVVFAFFWQVLFFGHWPTI------WSWVGAVMVVSSTVWV  323 (346)
T ss_pred             HHHHHhhhhccCCeehhhHHHHHHHHHHHHHHhcCCChH------HHhhceeeeehhHHHH
Confidence            999999999999999999999999999999999887665      4477766555544443

>KOG2922 consensus Uncharacterized conserved protein [Function unknown]

Probab=92.86  E-value=0.81  Score=42.92  Aligned_cols=118  Identities=16%  Similarity=0.136  Sum_probs=77.2

Q ss_pred             chhhHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHHH-H
Q 020034            9 RAALPSVGMVIVLLAQVSNMEVIKAAMSKGINKYVIIVYSDALSSLFFLFCSFLFHRSERPQLTFSILCSFFLLSVFG-C   87 (332)
Q Consensus         9 ~~~~~~l~ll~~~~~wg~~~~~~K~~l~~~~~p~~~~~~R~~~a~i~ll~~~~~~~r~~~~~~~~~~~~~l~~~g~~g-~   87 (332)
                      ....+.++.+.+.++.|+++++-|..+-. .   .-...|.              .....+.++...|+    .|++- .
T Consensus        18 d~~~G~~LaissS~~Ig~sfilkKkgl~r-~---~~~~~ra--------------~~gg~~yl~~~~Ww----~G~ltm~   75 (335)
T KOG2922|consen   18 DNIIGLVLAISSSIFIGSSFILKKKGLKR-A---GASGLRA--------------GEGGYGYLKEPLWW----AGMLTMI   75 (335)
T ss_pred             CceeeeeehhhccEEEeeehhhhHHHHHH-H---hhhcccc--------------cCCCcchhhhHHHH----HHHHHHH
Confidence            45556666777777788888888876542 1   0011110              11111222212222    33333 3


Q ss_pred             HHHHHHHHHhhccChhhHhHhhcchhHHHHHHHHHHHhhcccccccccccchhhhhhhhhchhheee
Q 020034           88 SSQIFSFVGIQYSSPTLSTAMLNLIPAFTFVLAIIFRLEKLNWENKSSQAKSLGTFASIGGAFVVTF  154 (332)
Q Consensus        88 ~~~~l~~~gl~~~sa~~A~~i~~~~P~~~~lls~l~~~Ek~~~~~~~s~~~~~gi~l~l~Gv~ll~~  154 (332)
                      +....-|.++.+.+++..+-+.+++-+..++++..+++||++++.      .+|..+|++|-.+++.
T Consensus        76 vGei~NFaAYaFAPasLVtPLGAlsvi~saila~~~L~Ekl~~~g------~lGc~l~v~Gst~iV~  136 (335)
T KOG2922|consen   76 VGEIANFAAYAFAPASLVTPLGALSVIISAILASFFLKEKLNLLG------ILGCVLCVVGSTTIVI  136 (335)
T ss_pred             HHhHhhHHHHhhchHhhhccchhHHHHHHHHHHHHHHHHHHHHhh------hhheeEEecccEEEEE
Confidence            444444667778888888888889999999999999999998764      8999999999988874

>TIGR00803 nst UDP-galactose transporter

Probab=91.86  E-value=0.95  Score=40.18  Aligned_cols=62  Identities=11%  Similarity=0.099  Sum_probs=52.8

Q ss_pred             HHHHHHHHHHHHHhhccChhhHhHhhcchhHHHHHHHHHHHhhcccccccccccchhhhhhhhhchhh
Q 020034           84 VFGCSSQIFSFVGIQYSSPTLSTAMLNLIPAFTFVLAIIFRLEKLNWENKSSQAKSLGTFASIGGAFV  151 (332)
Q Consensus        84 ~~g~~~~~l~~~gl~~~sa~~A~~i~~~~P~~~~lls~l~~~Ek~~~~~~~s~~~~~gi~l~l~Gv~l  151 (332)
                      +.+...+.+..+-++|.++..-+....+.++++.+++.++++|+++..      +++|..+.+.|+.+
T Consensus       160 ~~~a~~~~~v~~vlk~~~~~~~~~~~~~~~~~s~lls~~~f~~~ls~~------~~~g~~lV~~~~~l  221 (222)
T TIGR00803       160 LLNVGGGLCIGGVVRYADNTTKSFVTALSIILSTLASVRLFDAKISST------FYLGAILVFLATFL  221 (222)
T ss_pred             HHHHhcCceeeehhHHhHHHHHHHHHHHHHHHHHHHHHHHhcCCccHH------HHHHHHHHHeeeEe
Confidence            333556677888999999999999999999999999999999998875      48999999988753

NSTs generally appear to function by antiport mechanisms, exchanging a nucleotide-sugar for a nucleotide. Thus, CMP-sialic acid is exchanged for CMP; GDP-mannose is preferentially exchanged for GMP, and UDP-galactose and UDP-N-acetylglucosamine are exchanged for UMP (or possibly UDP). Other nucleotide sugars (e.g., GDP-fucose, UDP-xylose, UDP-glucose, UDP-N-acetylgalactosamine, etc.) may also be transported in exchange for various nucleotides, but their transporters have not been molecularly characterized. Each compound appears to be translocated by its own transport protein. Transport allows the compound, synthesized in the cytoplasm, to be exported to the lumen of the Golgi apparatus or the endoplasmic reticulum where it is used for the synthesis of glycoproteins and glycolipids.

>COG3238 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=91.09  E-value=3.7  Score=34.40  Aligned_cols=109  Identities=8%  Similarity=0.064  Sum_probs=63.2

Q ss_pred             ChHHHHHHHHHHHHHHHHHHHHHhhcCCCC-CCCHHHHHHHHHHHHHHHHHHHHHHHHhhccChhhHhHhhcchhHH-HH
Q 020034           40 NKYVIIVYSDALSSLFFLFCSFLFHRSERP-QLTFSILCSFFLLSVFGCSSQIFSFVGIQYSSPTLSTAMLNLIPAF-TF  117 (332)
Q Consensus        40 ~p~~~~~~R~~~a~i~ll~~~~~~~r~~~~-~~~~~~~~~l~~~g~~g~~~~~l~~~gl~~~sa~~A~~i~~~~P~~-~~  117 (332)
                      +|+.-.+.-+..+.+++..+.+. .++..+ ....+.-++...-|++|..+-..-........++....+.-..=++ ..
T Consensus        33 spl~As~isf~vGt~~L~~l~l~-~~~~~~~a~~~~~pwW~~~GG~lGa~~vt~s~~l~p~lGa~~t~~l~i~gQli~gl  111 (150)
T COG3238          33 SPLLASLISFLVGTVLLLILLLI-KQGHPGLAAVASAPWWAWIGGLLGAIFVTSSILLAPRLGAATTIALVIAGQLIMGL  111 (150)
T ss_pred             ChHHHHHHHHHHHHHHHHHHHHH-hcCCCchhhccCCchHHHHccchhhhhhhhhHHhccchhHHHHHHHHHHHHHHHHH
Confidence            69999999999999999888776 333321 2112222233456677755544555556666665554443322222 22


Q ss_pred             HHHHH-HHhhcccccccccccchhhhhhhhhchhhe
Q 020034          118 VLAII-FRLEKLNWENKSSQAKSLGTFASIGGAFVV  152 (332)
Q Consensus       118 lls~l-~~~Ek~~~~~~~s~~~~~gi~l~l~Gv~ll  152 (332)
                      ++..+ +++++   ||.++..|++|+++.++|++++
T Consensus       112 liD~fG~~g~~---~~~~~~~r~lgi~L~l~gil~~  144 (150)
T COG3238         112 LIDHFGWFGVP---KRPLNLPRILGILLVLAGILLA  144 (150)
T ss_pred             HHHhhcccCCC---cCCCCHHHHHHHHHHHHHHHHh
Confidence            22221 12232   3446677899999999995543

>COG4975 GlcU Putative glucose uptake permease [Carbohydrate transport and metabolism]

Probab=90.66  E-value=0.02  Score=51.49  Aligned_cols=136  Identities=13%  Similarity=0.101  Sum_probs=89.7

Q ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHHHHHH
Q 020034           10 AALPSVGMVIVLLAQVSNMEVIKAAMSKGINKYVIIVYSDALSSLFFLFCSFLFHRSERPQLTFSILCSFFLLSVFGCSS   89 (332)
Q Consensus        10 ~~~~~l~ll~~~~~wg~~~~~~K~~l~~~~~p~~~~~~R~~~a~i~ll~~~~~~~r~~~~~~~~~~~~~l~~~g~~g~~~   89 (332)
                      -.|+...++.+.+.+-...+..+..--++.+.+.--+.-+.++++++-.      ++..++.++..+.. .+-|+.=...
T Consensus       150 ~kkgi~~L~iSt~GYv~yvvl~~~f~v~g~saiLPqAiGMv~~ali~~~------~~~~~~~~K~t~~n-ii~G~~Wa~G  222 (288)
T COG4975         150 LKKGIVILLISTLGYVGYVVLFQLFDVDGLSAILPQAIGMVIGALILGF------FKMEKRFNKYTWLN-IIPGLIWAIG  222 (288)
T ss_pred             hhhheeeeeeeccceeeeEeeeccccccchhhhhHHHHHHHHHHHHHhh------cccccchHHHHHHH-HhhHHHHHhh
Confidence            4456666666666665555555543223455555556666666665431      22222333444444 3456555566


Q ss_pred             HHHHHHHhhccChhhHhHhhcchhHHHHHHHHHHHhhcccccccccccchhhhhhhhhchhheee
Q 020034           90 QIFSFVGIQYSSPTLSTAMLNLIPAFTFVLAIIFRLEKLNWENKSSQAKSLGTFASIGGAFVVTF  154 (332)
Q Consensus        90 ~~l~~~gl~~~sa~~A~~i~~~~P~~~~lls~l~~~Ek~~~~~~~s~~~~~gi~l~l~Gv~ll~~  154 (332)
                      +.+++.+-+....+.+=.+.++.-+...+...+++|||=+.|++  ..-++|+++.+.|++++..
T Consensus       223 Nl~ml~a~~~~GvAt~FSlSQlgViisTiGGIl~L~ekKtkkEm--~~v~iGiilivvgai~lg~  285 (288)
T COG4975         223 NLFMLLAAQKVGVATSFSLSQLGVIISTIGGILFLGEKKTKKEM--VYVIIGIILIVVGAILLGI  285 (288)
T ss_pred             HHHHHHhhhhhceeeeeeHhhheeeeeecceEEEEeccCchhhh--hhhhhhHHHHHHHhhhhhe
Confidence            77888888887777777778888888899999999999888775  3568899999999877653

>KOG1580 consensus UDP-galactose transporter related protein [Carbohydrate transport and metabolism]

Probab=90.65  E-value=0.42  Score=42.94  Aligned_cols=74  Identities=18%  Similarity=0.255  Sum_probs=64.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhccChhhHhHhhcchhHHHHHHHHHHHhhcccccccccccchhhhhhhhhchhhee
Q 020034           74 SILCSFFLLSVFGCSSQIFSFVGIQYSSPTLSTAMLNLIPAFTFVLAIIFRLEKLNWENKSSQAKSLGTFASIGGAFVVT  153 (332)
Q Consensus        74 ~~~~~l~~~g~~g~~~~~l~~~gl~~~sa~~A~~i~~~~P~~~~lls~l~~~Ek~~~~~~~s~~~~~gi~l~l~Gv~ll~  153 (332)
                      ..+..+.+.++.+++.|.+.|.-+.+-+|-.-+++..+--.|+.+.|.+++..+++.||      |+|.++.+.|..+=.
T Consensus       239 ~~~~~l~l~ai~s~LGQ~fIF~tv~~FgPLtCSivTTTRKfFTil~SVllf~npls~rQ------wlgtvlVF~aL~~D~  312 (337)
T KOG1580|consen  239 YVFWDLTLLAIASCLGQWFIFKTVEEFGPLTCSIVTTTRKFFTILISVLLFNNPLSGRQ------WLGTVLVFSALTADV  312 (337)
T ss_pred             HHHHHHHHHHHHHHhhhHHHHHHHHHhCCeeEEEEeehHHHHHHHHHHHHhcCcCcHHH------HHHHHHHHHHhhhHh
Confidence            44566778888889999999999999999999999999999999999999999998765      999999999976533

>KOG1581 consensus UDP-galactose transporter related protein [Carbohydrate transport and metabolism]

Probab=90.20  E-value=3.7  Score=38.32  Aligned_cols=135  Identities=16%  Similarity=0.189  Sum_probs=94.2

Q ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHHHhc-CCChHHHHHHHHHHHHHHHHHHHHHhhcCC-CC-----CCCHHHHHHHHHH
Q 020034           10 AALPSVGMVIVLLAQVSNMEVIKAAMSK-GINKYVIIVYSDALSSLFFLFCSFLFHRSE-RP-----QLTFSILCSFFLL   82 (332)
Q Consensus        10 ~~~~~l~ll~~~~~wg~~~~~~K~~l~~-~~~p~~~~~~R~~~a~i~ll~~~~~~~r~~-~~-----~~~~~~~~~l~~~   82 (332)
                      ...+++++....+.=|..+..-+...+. .+++..+.+.--+...+.=..- .+ ..+. ++     +.+++-+..+++.
T Consensus       170 s~~G~~Ll~~~L~fDgfTn~tQd~lf~~~k~s~~~mM~~vNLf~~i~~~~~-li-~qg~~~~av~F~~~hp~~~~Di~l~  247 (327)
T KOG1581|consen  170 SPIGILLLFGYLLFDGFTNATQDSLFKKYKVSSLHMMFGVNLFSAILNGTY-LI-LQGHLLPAVSFIKEHPDVAFDILLY  247 (327)
T ss_pred             chHhHHHHHHHHHHHhhHHhHHHHHhccCCccHhHHHHHHHHHHHHHHHHh-hh-cCCCCchHHHHHHcChhHHHHHHHH
Confidence            3445555555444446666665555543 4788888777766665544433 22 2222 22     2345666778899


Q ss_pred             HHHHHHHHHHHHHHhhccChhhHhHhhcchhHHHHHHHHHHHhhcccccccccccchhhhhhhhhchhhe
Q 020034           83 SVFGCSSQIFSFVGIQYSSPTLSTAMLNLIPAFTFVLAIIFRLEKLNWENKSSQAKSLGTFASIGGAFVV  152 (332)
Q Consensus        83 g~~g~~~~~l~~~gl~~~sa~~A~~i~~~~P~~~~lls~l~~~Ek~~~~~~~s~~~~~gi~l~l~Gv~ll  152 (332)
                      +++|+..|.+.|+-++.-++-.-+.|..+==++..++|.+.++.++++.+      |+|+.+.+.|..+=
T Consensus       248 s~~gavGQ~FI~~TI~~FGslt~t~I~ttRk~~si~lS~i~f~h~~s~~q------~~g~~iVFg~i~l~  311 (327)
T KOG1581|consen  248 STCGAVGQLFIFYTIERFGSLTFTTIMTTRKMVSIMLSCIVFGHPLSSEQ------WLGVLIVFGGIFLE  311 (327)
T ss_pred             HHhhhhhhheehhhHhhcccHHHHHHHHHHHHHHHHHHHHHhCCccchhh------ccCeeeehHHHHHH
Confidence            99999999999999998777777788888888899999999999998875      88888888887653

>PRK02971 4-amino-4-deoxy-L-arabinose-phosphoundecaprenol flippase subunit ArnF; Provisional

Probab=89.30  E-value=0.79  Score=37.46  Aligned_cols=97  Identities=11%  Similarity=0.009  Sum_probs=59.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHcCCCCCccccchhhhHHHHhhhhhhHHHH
Q 020034          184 GGFFLAAEAFMNSAWFILQALILRKFAAVLIIMFYLFFFNTILSTAFALIVVSEPSDWKLGLDIGLVAVLYSVSSYWHWV  263 (332)
Q Consensus       184 G~~l~L~aa~~~A~~~v~~~~~~~~~~~~~~i~~~~~l~g~i~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~gt~v~~~l  263 (332)
                      |.++.+.+.++-+..-++-|+-.++.++ ......     .. .... ...+    ++      .+..+...+.++++.+
T Consensus         3 ~~~~i~~sv~l~~~gQl~~K~g~~~~g~-~~~~~~-----~~-~~~~-~~~~----p~------~~i~lgl~~~~la~~~   64 (129)
T PRK02971          3 GYLWGLASVLLASVAQLSLKWGMSRLPL-LSHAWD-----FI-AALL-AFGL----AL------RAVLLGLAGYALSMLC   64 (129)
T ss_pred             cHHHHHHHHHHHHHHHHHHHHHHhhCCC-ccchhH-----HH-HHHH-HHhc----cH------HHHHHHHHHHHHHHHH
Confidence            5667788888888887887877666542 111110     00 0000 0000    00      0111111116799999


Q ss_pred             HHHHhhcch---hhhhcchHHHHHHHHHHH--HhCCCccc
Q 020034          264 SSWLVHMVP---VENWTSLCINVQALGHCL--LYCHGCRH  298 (332)
Q Consensus       264 ~~~a~~~~~---~s~~~~l~pv~~~i~~~l--~lgE~~~~  298 (332)
                      |.+++++.|   +.++..+.++...+.++.  ++||+++.
T Consensus        65 w~~aL~~~~ls~Ayp~~sl~~~~v~~~~~~~~~~~E~ls~  104 (129)
T PRK02971         65 WLKALRYLPLSRAYPLLSLSYALVYLAAMLLPWFNETFSL  104 (129)
T ss_pred             HHHHHHhCCcHHHHHHHHHHHHHHHHHHHHHHHcCCCCCH
Confidence            999999994   667777777778888875  89999985

>PF00893 Multi_Drug_Res: Small Multidrug Resistance protein; InterPro: IPR000390 Members of this family which have been characterised, belong to the small multidrug resistance (Smr) protein family and are integral membrane proteins

Probab=88.46  E-value=2.8  Score=32.02  Aligned_cols=42  Identities=17%  Similarity=0.199  Sum_probs=26.5

Q ss_pred             hhhHHHHHHHHhhcch----hhhhcchHHHHHHHHHHHHhCCCccc
Q 020034          257 SSYWHWVSSWLVHMVP----VENWTSLCINVQALGHCLLYCHGCRH  298 (332)
Q Consensus       257 t~v~~~l~~~a~~~~~----~s~~~~l~pv~~~i~~~l~lgE~~~~  298 (332)
                      -++++.++.+++|+.|    -+++.-+..+..++.|++++||+++.
T Consensus        39 ~~~s~~~l~~al~~lp~~vaYavw~g~g~v~~~~~~~~~f~E~~s~   84 (93)
T PF00893_consen   39 YGLSFYFLSLALKKLPLSVAYAVWTGLGIVGVTLVGVFFFGESLSL   84 (93)
T ss_dssp             HHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHH------
T ss_pred             HHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHhCCCCCH
Confidence            4578899999999996    34566678899999999999999974

They confer resistance to a wide range of toxic compounds by removing them for the cells. The efflux is coupled to an influx of protons. An example is Escherichia coli mvrC P23895 from SWISSPROT which prevents the incorporation of methyl viologen into cells [] and is involved in ethidium bromide efflux [].; GO: 0016021 integral to membrane; PDB: 2I68_A.

>KOG1444 consensus Nucleotide-sugar transporter VRG4/SQV-7 [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]

Probab=88.34  E-value=2.1  Score=40.13  Aligned_cols=137  Identities=18%  Similarity=0.227  Sum_probs=98.0

Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHhc-CCChHHHHHHHHHHHHHHHHHHHHHhhcCC-----CCCC-CHHHHHHHHHHH
Q 020034           11 ALPSVGMVIVLLAQVSNMEVIKAAMSK-GINKYVIIVYSDALSSLFFLFCSFLFHRSE-----RPQL-TFSILCSFFLLS   83 (332)
Q Consensus        11 ~~~~l~ll~~~~~wg~~~~~~K~~l~~-~~~p~~~~~~R~~~a~i~ll~~~~~~~r~~-----~~~~-~~~~~~~l~~~g   83 (332)
                      .++|.++....+.-....+..|+..+. +..-+.+..+--+++...+....+..+...     .+.. ...-+..+.+.+
T Consensus       156 ~~gY~w~~~n~~~~a~~~v~~kk~vd~~~l~~~~lv~yNnl~~L~~l~~~~~~~ge~~~l~~~~~~~~~~~~~~~~~lSc  235 (314)
T KOG1444|consen  156 LRGYSWALANCLTTAAFVVYVKKSVDSANLNKFGLVFYNNLLSLPPLLILSFITGELDALSLNFDNWSDSSVLVVMLLSC  235 (314)
T ss_pred             chhHHHHHHHHHHHHHHHHHHHHhhccccccceeEEeehhHHHHHHHHHHHHHhcchHHHHhhcccccchhHHHHHHHHH
Confidence            447888888888888889999988764 477788889998888888777665432111     1111 123355666777


Q ss_pred             HHHHHHHHHHHHHhhccChhhHhHhhcchhHHHHHHHHHHHhhcccccccccccchhhhhhhhhchhhee
Q 020034           84 VFGCSSQIFSFVGIQYSSPTLSTAMLNLIPAFTFVLAIIFRLEKLNWENKSSQAKSLGTFASIGGAFVVT  153 (332)
Q Consensus        84 ~~g~~~~~l~~~gl~~~sa~~A~~i~~~~P~~~~lls~l~~~Ek~~~~~~~s~~~~~gi~l~l~Gv~ll~  153 (332)
                      ++|.+-.++.++..+..|+..-++.....-..+.+...++.++++++      ...+|+.++++|-++-.
T Consensus       236 v~gf~isy~s~~ct~~~SAtT~tivG~~n~l~t~l~~ll~~d~~~~~------~n~~gll~~~~ggv~Y~  299 (314)
T KOG1444|consen  236 VMGFGISYTSFLCTRVNSATTTTIVGAKNKLLTYLGGLLFGDKPFTF------LNVIGLLVGFFGGVLYS  299 (314)
T ss_pred             HHHHHHHHHHHHHHhhccccceeehhhhhhHHHHHHHHhcCCceech------hhhHHHHHHhhhhhHHh
Confidence            77766667888899999988888888555555555556666776665      45999999999987755

>PRK10452 multidrug efflux system protein MdtJ; Provisional

Probab=87.97  E-value=3.1  Score=33.58  Aligned_cols=42  Identities=19%  Similarity=0.148  Sum_probs=34.6

Q ss_pred             hhhHHHHHHHHhhcch----hhhhcchHHHHHHHHHHHHhCCCccc
Q 020034          257 SSYWHWVSSWLVHMVP----VENWTSLCINVQALGHCLLYCHGCRH  298 (332)
Q Consensus       257 t~v~~~l~~~a~~~~~----~s~~~~l~pv~~~i~~~l~lgE~~~~  298 (332)
                      -++++.++..++|++|    -+++.-+-.+.+++.+++++||+++.
T Consensus        40 ~~~sf~~ls~al~~lplsiAYavw~GiG~v~~~~ig~~~f~E~~s~   85 (120)
T PRK10452         40 ISLSYIFLSFAVKKIALGVAYALWEGIGILFITLFSVLLFDESLSL   85 (120)
T ss_pred             HHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHHHHhCCCCCH
Confidence            4578899999999886    44555677888999999999999985

>PRK10650 multidrug efflux system protein MdtI; Provisional

Probab=87.77  E-value=4.5  Score=32.01  Aligned_cols=42  Identities=12%  Similarity=0.044  Sum_probs=35.8

Q ss_pred             hhhHHHHHHHHhhcch----hhhhcchHHHHHHHHHHHHhCCCccc
Q 020034          257 SSYWHWVSSWLVHMVP----VENWTSLCINVQALGHCLLYCHGCRH  298 (332)
Q Consensus       257 t~v~~~l~~~a~~~~~----~s~~~~l~pv~~~i~~~l~lgE~~~~  298 (332)
                      -.++|.+...++|++|    -++..-+-.+.+++.+++++||+++.
T Consensus        45 ~~~sf~~Ls~al~~lpvgvAYAvW~GiG~v~~~~ig~~~f~e~~~~   90 (109)
T PRK10650         45 VLAAFSALSQAVKGIDLSVAYALWGGFGIAATLAAGWILFGQRLNR   90 (109)
T ss_pred             HHHHHHHHHHHHhhCchHHHHHHHHHHHHHHHHHHHHHHcCCCCCH
Confidence            5688999999999986    55777778899999999999999974

>KOG1583 consensus UDP-N-acetylglucosamine transporter [Carbohydrate transport and metabolism]

Probab=87.60  E-value=7.7  Score=35.88  Aligned_cols=239  Identities=13%  Similarity=0.099  Sum_probs=131.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhhc-cChhhHhHhhcchhHHHHHHH
Q 020034           42 YVIIVYSDALSSLFFLFCSFLFHRSERPQLTFSILCSFFLLSVFGCSSQIFSFVGIQY-SSPTLSTAMLNLIPAFTFVLA  120 (332)
Q Consensus        42 ~~~~~~R~~~a~i~ll~~~~~~~r~~~~~~~~~~~~~l~~~g~~g~~~~~l~~~gl~~-~sa~~A~~i~~~~P~~~~lls  120 (332)
                      -.+++.+|++-+.-=+++.-.+. ..+|+.+.|++....  +.+ +..+.+-.+++++ .+-..=-++-.-.++-+++++
T Consensus        34 NLITFaqFlFia~eGlif~skf~-~~k~kiplk~Y~i~V--~mF-F~vnv~NN~al~f~I~~PlHiIfRsgsll~nM~~g  109 (330)
T KOG1583|consen   34 NLITFAQFLFIATEGLIFTSKFF-TVKPKIPLKDYAITV--AMF-FIVNVTNNYALKFNIPMPLHIIFRSGSLLANMILG  109 (330)
T ss_pred             eehHHHHHHHHHHhceeeecccc-ccCCCCchhhhheeh--hee-eeeeeeccceeeecccceEEEEEecCcHHHHHHHH
Confidence            45666666655443332211111 112455666654432  222 2233344566665 333334455678888999999


Q ss_pred             HHHHhhcccccccccccchhhhhhhhhchhheeeccCCCCcCCCCCCCCCccccCCCCCcchhHHHHHHHHHHHHHHHHH
Q 020034          121 IIFRLEKLNWENKSSQAKSLGTFASIGGAFVVTFYKGPPLIGELSHSGSPRRLLLSPQLSWILGGFFLAAEAFMNSAWFI  200 (332)
Q Consensus       121 ~l~~~Ek~~~~~~~s~~~~~gi~l~l~Gv~ll~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~G~~l~L~aa~~~A~~~v  200 (332)
                      +++.+.|-+.      .|+.++.+.=+|+++-.+.+.++...  .+.++-+.+.......|..|+.++..|-+.-|.-.+
T Consensus       110 ~il~~k~Ys~------~Qy~Sv~~iTiGiiIcTl~s~~d~~~--~~~~l~~~~~~~~~~~w~iGi~lL~~al~~sa~mgi  181 (330)
T KOG1583|consen  110 WILLGKRYSL------RQYSSVLMITIGIIICTLFSSKDGRS--KLSGLDSGSAQSDFFWWLIGIALLVFALLLSAYMGI  181 (330)
T ss_pred             HHhccceeeh------hhhhhHHhhhhhheeEEeecCcchhh--hhcccccCcccccchHHHHHHHHHHHHHHHHHHHHH
Confidence            9998766554      46889999999998877665444321  000000000111223567899888888888888888


Q ss_pred             HHHHHHHhcc-hHHHHHHHHHHHHHHHHHHHHHHHcCC---------------CCCccccchhhhHHHHhhhhhhHHHHH
Q 020034          201 LQALILRKFA-AVLIIMFYLFFFNTILSTAFALIVVSE---------------PSDWKLGLDIGLVAVLYSVSSYWHWVS  264 (332)
Q Consensus       201 ~~~~~~~~~~-~~~~i~~~~~l~g~i~~~~~~~~~~~~---------------~~~~~~~~~~~~~~ll~~gt~v~~~l~  264 (332)
                      .|.+.-+++. ++-...++.=+...    |..++...+               .+.........|..++.  ..+.+..=
T Consensus       182 yqE~~Y~kyGKh~~EalFytH~LsL----P~Flf~~~div~~~~~~~~se~~~~p~~g~~vP~~~~yLl~--n~L~Qy~C  255 (330)
T KOG1583|consen  182 YQETTYQKYGKHWKEALFYTHFLSL----PLFLFMGDDIVSHWRLAFKSESYLIPLLGFKVPSMWVYLLF--NVLTQYFC  255 (330)
T ss_pred             HHHHHHHHhcCChHHHHHHHHHhcc----chHHHhcchHHHHHHHHhcCcceeccccCccccHHHHHHHH--HHHHHHHH
Confidence            8887766653 44555555554443    333322211               01111111122333333  33444433


Q ss_pred             HHHhhcc-----h--hhhhcchHHHHHHHHHHHHhCCCccc
Q 020034          265 SWLVHMV-----P--VENWTSLCINVQALGHCLLYCHGCRH  298 (332)
Q Consensus       265 ~~a~~~~-----~--~s~~~~l~pv~~~i~~~l~lgE~~~~  298 (332)
                      ..+.-.+     +  +++...+.=.++.+++.+.++.++++
T Consensus       256 ikgVy~L~te~~sLTVTlvltlRKFvSLl~SiiyF~Npft~  296 (330)
T KOG1583|consen  256 IKGVYILTTETSSLTVTLVLTLRKFVSLLFSIIYFENPFTP  296 (330)
T ss_pred             HHhhhhhhceecceEEEEeeeHHHHHHHhheeeEecCCCCH
Confidence            3333222     2  77888889999999999999999864

>PRK09541 emrE multidrug efflux protein; Reviewed

Probab=85.89  E-value=4.4  Score=32.10  Aligned_cols=42  Identities=12%  Similarity=0.204  Sum_probs=33.4

Q ss_pred             hhhHHHHHHHHhhcch----hhhhcchHHHHHHHHHHHHhCCCccc
Q 020034          257 SSYWHWVSSWLVHMVP----VENWTSLCINVQALGHCLLYCHGCRH  298 (332)
Q Consensus       257 t~v~~~l~~~a~~~~~----~s~~~~l~pv~~~i~~~l~lgE~~~~  298 (332)
                      -++++.++..+++++|    -++..-+..+.+++.|++++||+++.
T Consensus        40 ~~~sf~~l~~al~~ipl~iAYavw~GlG~v~~~l~g~~~f~e~~~~   85 (110)
T PRK09541         40 YCASFWLLAQTLAYIPTGIAYAIWSGVGIVLISLLSWGFFGQRLDL   85 (110)
T ss_pred             HHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHHHHhCCCCCH
Confidence            4577888888888886    44555567888899999999999975

>COG2076 EmrE Membrane transporters of cations and cationic drugs [Inorganic ion transport and metabolism]

Probab=84.86  E-value=4.9  Score=31.63  Aligned_cols=42  Identities=21%  Similarity=0.273  Sum_probs=36.3

Q ss_pred             hhhHHHHHHHHhhcch----hhhhcchHHHHHHHHHHHHhCCCccc
Q 020034          257 SSYWHWVSSWLVHMVP----VENWTSLCINVQALGHCLLYCHGCRH  298 (332)
Q Consensus       257 t~v~~~l~~~a~~~~~----~s~~~~l~pv~~~i~~~l~lgE~~~~  298 (332)
                      -.++|.+...++|++|    -++..-+-.+.+++.|++++||+++.
T Consensus        40 ~~~sf~~Ls~alk~ipvgvAYAiW~GiG~v~~~l~g~~~f~E~l~~   85 (106)
T COG2076          40 YGLSFYLLSLALKTIPLGVAYAIWTGIGIVGTALVGVLLFGESLSL   85 (106)
T ss_pred             HHHHHHHHHHHHhhCchHHHHHHHHHHHHHHHHHHHHHhcCCcCCH
Confidence            4588999999999996    55777788899999999999999985

>COG5070 VRG4 Nucleotide-sugar transporter [Carbohydrate transport and metabolism / Posttranslational modification, protein turnover, chaperones / Intracellular trafficking and secretion]

Probab=84.10  E-value=3.8  Score=36.66  Aligned_cols=137  Identities=14%  Similarity=0.155  Sum_probs=95.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHh-cCCChHHHHHHHHHHHHHHHHHHHHHhhcCCCC----CCCHHHHHHHHHHHHHHH
Q 020034           13 PSVGMVIVLLAQVSNMEVIKAAMS-KGINKYVIIVYSDALSSLFFLFCSFLFHRSERP----QLTFSILCSFFLLSVFGC   87 (332)
Q Consensus        13 ~~l~ll~~~~~wg~~~~~~K~~l~-~~~~p~~~~~~R~~~a~i~ll~~~~~~~r~~~~----~~~~~~~~~l~~~g~~g~   87 (332)
                      +|+++....+--+..-...|...+ .+..-++..++.-.++..+++.+.+.++.+...    .++...+...++.|++..
T Consensus       156 GY~Wm~~NclssaafVL~mrkri~ltNf~d~dtmfYnNllslPiL~~~s~~~edws~~n~annl~~d~l~am~ISgl~sv  235 (309)
T COG5070         156 GYLWMFTNCLSSAAFVLIMRKRIKLTNFKDFDTMFYNNLLSLPILLSFSFLFEDWSPGNLANNLSVDSLMAMFISGLCSV  235 (309)
T ss_pred             ceEEEehhhHhHHHHHHHHHHhhcccccchhhHHHHhhhHHHHHHHHHHHHhccCCcchhhcCCChHHHHHHHHHHHHHh
Confidence            455555444433333444554433 236678889999999999999888776543221    244555667777787776


Q ss_pred             HHHHHHHHHhhccChhhHhHhhcchhHHHHHHHHHHHhhcccccccccccchhhhhhhhhchhheeec
Q 020034           88 SSQIFSFVGIQYSSPTLSTAMLNLIPAFTFVLAIIFRLEKLNWENKSSQAKSLGTFASIGGAFVVTFY  155 (332)
Q Consensus        88 ~~~~l~~~gl~~~sa~~A~~i~~~~P~~~~lls~l~~~Ek~~~~~~~s~~~~~gi~l~l~Gv~ll~~~  155 (332)
                      +-.++--+.++-++++.-+....+.-.-.++-+.++++|+.+..      ++..+.+++..-.+...+
T Consensus       236 giSy~saWcvrVtSSTtySMvGALNKlp~alaGlvffdap~nf~------si~sillGflsg~iYava  297 (309)
T COG5070         236 GISYCSAWCVRVTSSTTYSMVGALNKLPIALAGLVFFDAPVNFL------SIFSILLGFLSGAIYAVA  297 (309)
T ss_pred             hhhhccceeEeehhhhHHHHHHHhhhChHHHhhhhhcCCchhHH------HHHHHHHHHHHHHHHHHH
Confidence            66677788889999988888888887778888899999998754      488888887766554433

>PRK11431 multidrug efflux system protein; Provisional

Probab=83.55  E-value=7.7  Score=30.46  Aligned_cols=42  Identities=14%  Similarity=0.200  Sum_probs=35.3

Q ss_pred             hhhHHHHHHHHhhcch----hhhhcchHHHHHHHHHHHHhCCCccc
Q 020034          257 SSYWHWVSSWLVHMVP----VENWTSLCINVQALGHCLLYCHGCRH  298 (332)
Q Consensus       257 t~v~~~l~~~a~~~~~----~s~~~~l~pv~~~i~~~l~lgE~~~~  298 (332)
                      -+++|.+...++|++|    -++..-+-.+.+++.|++++||+++.
T Consensus        39 ~~~sf~~Ls~al~~ip~gvaYAvW~GiG~v~~~lig~~~f~e~~~~   84 (105)
T PRK11431         39 MIVSMALLAWAMKSLPVGTAYAVWTGIGAVGAAITGIVLLGESASP   84 (105)
T ss_pred             HHHHHHHHHHHHhhCCcHhHHHHHHHHHHHHHHHHHHHHhCCCCCH
Confidence            4578888889998886    55777778899999999999999985

>PF04657 DUF606: Protein of unknown function, DUF606; InterPro: IPR006750 This family contains uncharacterised bacterial proteins

Probab=80.66  E-value=30  Score=28.41  Aligned_cols=101  Identities=11%  Similarity=-0.022  Sum_probs=62.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHcCCCCCccccchhhhHHHHhhh---hhhHH
Q 020034          185 GFFLAAEAFMNSAWFILQALILRKFAAVLIIMFYLFFFNTILSTAFALIVVSEPSDWKLGLDIGLVAVLYSV---SSYWH  261 (332)
Q Consensus       185 ~~l~L~aa~~~A~~~v~~~~~~~~~~~~~~i~~~~~l~g~i~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~g---t~v~~  261 (332)
                      .++.+++...-++...++.++.++..+|..-+.+.+..|.+.+..+..+.++.  ++.......|+  .|.|   +.+--
T Consensus         3 ~lla~~aG~~i~~q~~~N~~L~~~~gs~~~as~i~~~~G~i~~~i~~~~~~~~--~~~~~~~~p~w--~~lGG~lG~~~V   78 (138)
T PF04657_consen    3 ILLALLAGALIALQAAFNGQLGKALGSPLVASFISFGVGFILLLIILLITGRP--SLASLSSVPWW--AYLGGLLGVFFV   78 (138)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHHHHHHhccc--ccchhccCChH--HhccHHHHHHHH
Confidence            45678888888888888888877776689999999999999998877776542  11111111222  2333   33334


Q ss_pred             HHHHHHhhcc-h---hhhhcchHHHHHHHHHH
Q 020034          262 WVSSWLVHMV-P---VENWTSLCINVQALGHC  289 (332)
Q Consensus       262 ~l~~~a~~~~-~---~s~~~~l~pv~~~i~~~  289 (332)
                      ....+..+++ +   +.....-|-+.+.++..
T Consensus        79 ~~~~~~vp~lG~~~~~~l~~~GQl~~sl~iD~  110 (138)
T PF04657_consen   79 LSNIILVPRLGAALTTILIVAGQLIASLLIDH  110 (138)
T ss_pred             HHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHH
Confidence            5566777777 5   22222234444444443

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	332
2i68_A	137	Protein EMRE; transmembrane protein, small-multidr	98.09
3b5d_A	110	Multidrug transporter EMRE; helical membrane prote	98.05
2i68_A	137	Protein EMRE; transmembrane protein, small-multidr	96.37
3b5d_A	110	Multidrug transporter EMRE; helical membrane prote	94.78

>2i68_A Protein EMRE; transmembrane protein, small-multidrug resistance, transporter, homodimer, dual topology, transport protein; NMR {Escherichia coli}

Probab=98.09  E-value=2.9e-06  Score=69.06  Aligned_cols=68  Identities=13%  Similarity=0.220  Sum_probs=50.9

Q ss_pred             HHHHHH-HHHHHHHHHHhhccChhhHhHh-hcchhHHHHHHHHHHHhhcccccccccccchhhhhhhhhchhheee
Q 020034           81 LLSVFG-CSSQIFSFVGIQYSSPTLSTAM-LNLIPAFTFVLAIIFRLEKLNWENKSSQAKSLGTFASIGGAFVVTF  154 (332)
Q Consensus        81 ~~g~~g-~~~~~l~~~gl~~~sa~~A~~i-~~~~P~~~~lls~l~~~Ek~~~~~~~s~~~~~gi~l~l~Gv~ll~~  154 (332)
                      +.+++. .++++++..++++.+++.|..+ .++.|++++++++++++|++++++      ++|+.+.++|++++..
T Consensus        34 ~l~i~~~~ls~~l~~~alk~i~~s~ay~iw~~l~pv~~~l~g~l~lgE~ls~~~------~~Gi~LIi~GV~ll~~  103 (137)
T 2i68_A           34 VGTIICYCASFWLLAQTLAYIPTGIAYAIWSGVGIVLISLLSWGFFGQRLDLPA------IIGMMLICAGVLIINL  103 (137)
T ss_dssp             CHHHHHHHHHHHHHHHHHC-----CHHHHHHHHHHHHHHHHHHHHHC------C------HHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHhCChhHHHHHHHHHHHHHHHHHHHHHhCCCCCHHH------HHHHHHHHHHHHHHhc
Confidence            456666 8899999999999999999888 899999999999999999998764      9999999999988763

>3b5d_A Multidrug transporter EMRE; helical membrane protein, multidrug resistance transporter, SMR, antiport, inner membrane, transmembrane; HET: P4P; 3.80A {Escherichia coli K12} PDB: 3b61_A 3b62_A*

Probab=98.05  E-value=6.1e-06  Score=64.64  Aligned_cols=67  Identities=13%  Similarity=0.213  Sum_probs=59.7

Q ss_pred             HHHHHH-HHHHHHHHHHhhccChhhHhHh-hcchhHHHHHHHHHHHhhcccccccccccchhhhhhhhhchhhee
Q 020034           81 LLSVFG-CSSQIFSFVGIQYSSPTLSTAM-LNLIPAFTFVLAIIFRLEKLNWENKSSQAKSLGTFASIGGAFVVT  153 (332)
Q Consensus        81 ~~g~~g-~~~~~l~~~gl~~~sa~~A~~i-~~~~P~~~~lls~l~~~Ek~~~~~~~s~~~~~gi~l~l~Gv~ll~  153 (332)
                      ..++.+ ..++.++..++++.+.+.|..+ ..+.|++++++++++++|+++.+|      ++|+.+.++|++++.
T Consensus        34 ~~~~~~~~~~~~~~~~al~~~p~s~ay~i~~g~~~v~~~l~~~~~~~E~~s~~~------~~Gi~lIi~Gv~~l~  102 (110)
T 3b5d_A           34 VGTIICYCASFWLLAQTLAYIPTGIAYAIWSGVGIVLISLLSWGFFGQRLDLPA------IIGMMLICAGVLIIN  102 (110)
T ss_pred             HHHHHHHHHHHHHHHHHHHhCChhhHHHHHhhHHHHHHHHHHHHHhCCCCCHHH------HHHHHHHHHHHHHHh
Confidence            455555 7888999999999999999888 799999999999999999998764      999999999998875

>2i68_A Protein EMRE; transmembrane protein, small-multidrug resistance, transporter, homodimer, dual topology, transport protein; NMR {Escherichia coli}

Probab=96.37  E-value=0.0015  Score=53.00  Aligned_cols=42  Identities=10%  Similarity=0.085  Sum_probs=31.2

Q ss_pred             hhhHHHHHHHHhhcch---hhhh-cchHHHHHHHHHHHHhCCCccc
Q 020034          257 SSYWHWVSSWLVHMVP---VENW-TSLCINVQALGHCLLYCHGCRH  298 (332)
Q Consensus       257 t~v~~~l~~~a~~~~~---~s~~-~~l~pv~~~i~~~l~lgE~~~~  298 (332)
                      ++++|.++.+++++.|   +.++ ..+.|++++++|++++||+++.
T Consensus        40 ~~ls~~l~~~alk~i~~s~ay~iw~~l~pv~~~l~g~l~lgE~ls~   85 (137)
T 2i68_A           40 YCASFWLLAQTLAYIPTGIAYAIWSGVGIVLISLLSWGFFGQRLDL   85 (137)
T ss_dssp             HHHHHHHHHHHHC-----CHHHHHHHHHHHHHHHHHHHHHC-----
T ss_pred             HHHHHHHHHHHHHhCChhHHHHHHHHHHHHHHHHHHHHHhCCCCCH
Confidence            6789999999999994   6566 8999999999999999999975

>3b5d_A Multidrug transporter EMRE; helical membrane protein, multidrug resistance transporter, SMR, antiport, inner membrane, transmembrane; HET: P4P; 3.80A {Escherichia coli K12} PDB: 3b61_A 3b62_A*

Probab=94.78  E-value=0.12  Score=39.74  Aligned_cols=42  Identities=10%  Similarity=0.085  Sum_probs=36.6

Q ss_pred             hhhHHHHHHHHhhcch---hhhh-cchHHHHHHHHHHHHhCCCccc
Q 020034          257 SSYWHWVSSWLVHMVP---VENW-TSLCINVQALGHCLLYCHGCRH  298 (332)
Q Consensus       257 t~v~~~l~~~a~~~~~---~s~~-~~l~pv~~~i~~~l~lgE~~~~  298 (332)
                      .+++|.++.+++|+.|   +.++ ..+.|++++++|++++||+++.
T Consensus        40 ~~~~~~~~~~al~~~p~s~ay~i~~g~~~v~~~l~~~~~~~E~~s~   85 (110)
T 3b5d_A           40 YCASFWLLAQTLAYIPTGIAYAIWSGVGIVLISLLSWGFFGQRLDL   85 (110)
T ss_pred             HHHHHHHHHHHHHhCChhhHHHHHhhHHHHHHHHHHHHHhCCCCCH
Confidence            5688999999999995   5455 7899999999999999999974

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00