Citrus Sinensis ID: 020035

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330--
Protein Sequence
MAASLIPKTLQSIRNPNAISSFTTFRTRHLCSVATVHQSPQYDDDPTSSFTFSSPSDKINESIYIKGRKQETASSSSSSVTMPMSFMTGSIVGKRFYEKVSTREADDGNGWTVMLDYRTLKTPSKRPLKLPTLGLAKAIGAEWDYQQTDGIRPFMMPLMKLACTALERVPLTRPKIIEHLMKKFNQDLVFCRAPADNDLTSGVHERQVQKIDPLLKWVESEFGFKPVVYSSFFGGKQEDGLIKTVENLMKKTDDYELAAIDAIAAAAHSLVIAIGIFRGKLQIEEAIELIRLEEDLQVDKWGLVEGGHDIDIADLRVQISSATVFLGLSRRN
Secondary Structure (PSIPRED)
ccccccHHHHHHccccccccccccccEEcccccccccccccccccccccccccccccccHHHHHHHccHHHHHccccccccccccccccccccccccEEEEEEEEcccccEEEEEcccccccccccccccccHHHHHHHHHHHcccccccccccccHHHHHHHHHHccccccHHHHHHHHHHHccccEEEEEccccccccHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHccc
Secondary Structure Prediction (SSPRO)
cHHHHHHHHHHHccccHHcHHHHHHHHHHHHHHHHHHccccccccccccEEEcccccccccEEEEEccccHccccccccccccccccccccccHHEEEEEEEEEccccccEEEEEcccEccccccccEEcccHHHHHHHHHHHHHHcccccccccccHHHHHHHHHHcccccHHHHHHHHHHHHcccEEEEEccccHHHHHHHHHHHHHHHHHHHHHHHHHcccEEEEEcccccccccHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHcHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHccc
Coil and Loop (DISEMBL)
maaslipktlqsirnpnaissftTFRTRHLCsvatvhqspqydddptssftfsspsdkinesIYIKgrkqetassssssvtmpmsfmtgsivgkrfYEKVstreaddgngwTVMLDYRtlktpskrplklptLGLAKAIGAewdyqqtdgirpfmmPLMKLACTAlervpltrPKIIEHLMKKFNQDlvfcrapadndltsgvherqvqkidpllkwvesefgfkpvvyssffggkqedGLIKTVENLMKKTDDYELAAIDAIAAAAHSLVIAIGIFRGKLQIEEAIELIRLEEdlqvdkwglvegghdidiaDLRVQISSATVFLGLSRRN
Flexible Loop (DISEMBL)
maaslipktlqsirnpnAISSFTTFRTRHLCSVATVhqspqydddptssftfsspsdkINESIYIKgrkqetassssssvtmpmSFMTGSIVGKRFYEKVStreaddgngwtVMLDYRtlktpskrplklpTLGLAKAIGAEWDYQQTDGIRPFMMPLMKLACTALERVPLTRPKIIEHLMKKFNQDLVFCRAPADNDLTSGVHERQVQKIDPLLKWVESEFGFKPVVYSsffggkqedGLIKTVENLMKKTDDYELAAIDAIAAAAHSLVIAIGIFRGKLQIEEAIELIRLEEDLQVDKWGLVEGGHDIDIADLRVQISSAtvflglsrrn
Low Complexity Region (SEG)
MAASLIPKTLQSIRNPNAISSFTTFRTRHLCSVATVHQSPQYdddptssftfsspsdKINESIYIKGRKQETAssssssVTMPMSFMTGSIVGKRFYEKVSTREADDGNGWTVMLDYRTLKTPSKRPLKLPTLGLAKAIGAEWDYQQTDGIRPFMMPLMKLACTALERVPLTRPKIIEHLMKKFNQDLVFCRAPADNDLTSGVHERQVQKIDPLLKWVESEFGFKPVVYSSFFGGKQEDGLIKTVENLMKKTDDYELaaidaiaaaahslviaiGIFRGKLQieeaielirleedlQVDKWGLVEGGHDIDIADLRVQISSATVFLGLSRRN
Disordered region (IsUnstruct)
*****************AISSFTTFRTRHLCSVATV**************************************************MTGSIVGKRFYEKVSTREADDGNGWTVMLDYRTLKTPSKRPLKLPTLGLAKAIGAEWDYQQTDGIRPFMMPLMKLACTALERVPLTRPKIIEHLMKKFNQDLVFCRAPADNDLTSGVHERQVQKIDPLLKWVESEFGFKPVVYSSFFGGKQEDGLIKTVENLMKKTDDYELAAIDAIAAAAHSLVIAIGIFRGKLQIEEAIELIRLEEDLQVDKWGLVEGGHDIDIADLRVQISSATVFLGL****
Disordered Region (DISOPRED)
*************RNPNAISSFTTFRTRHLCS***************************************************************FYEKVSTREADDGNGWTVMLDYRTLKTPSKRPLKLPTLGLAKAIGAEWDYQQTDGIRPFMMPLMKLACTALERVPLTRPKIIEHLMKKFNQDLVFCRAPADNDLTSGVHERQVQKIDPLLKWVESEFGFKPVVYSSFFGGKQEDGLIKTVENLMKKTDDYELAAIDAIAAAAHSLVIAIGIFRGKLQIEEAIELIRLEEDLQVDKWGLVEGGHDIDIADLRVQISSATVFLGLSR**
Disordered Region (DISEMBL)
MAASLIPKTLQSIRNPNAISSFTTFRTRHLCSVATVHQSPQYDDDPTSSFTFSSPSDKINESIYIK**************TMPMSFMTGSIVGKRFYEKVSTREADDGNGWTVMLDYRTLKTPSKRPLKLPTLGLAKAIGAEWDYQQTDGIRPFMMPLMKLACTALERVPLTRPKIIEHLMKKFNQDLVFCRAPADNDLTSGVHERQVQKIDPLLKWVESEFGFKPVVYSSFFGGKQEDGLIKTVENLMKKTDDYELAAIDAIAAAAHSLVIAIGIFRGKLQIEEAIELIRLEEDLQVDKWGLVEGGHDIDIADLRVQISSATVFLGLSRRN
Disordered Region (DISPRO)
**ASLIPKTLQSIRNPNAISSFTTFRTRHLCSVATVHQ******************DKINESIY*KGRK****************F*TGSIVGKRFYEKVSTREADDGNGWTVMLDYRTLKTPSKRPLKLPTLGLAKAIGAEWDYQQTDGIRPFMMPLMKLACTALERVPLTRPKIIEHLMKKFNQDLVFCRAPADNDLTSGVHERQVQKIDPLLKWVESEFGFKPVVYSSFFGGKQEDGLIKTVENLMKKTDDYELAAIDAIAAAAHSLVIAIGIFRGKLQIEEAIELIRLEEDLQVDKWGLVEGGHDIDIADLRVQISSATVFLGLSRRN
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MAASLIPKTLQSIRNPNAISSFTTFRTRHLCSVATVHQSPQYDDDPTSSFTFSSPSDKINESIYIKGRKQETASSSSSSVTMPMSFMTGSIVGKRFYEKVSTREADDGNGWTVMLDYRTLKTPSKRPLKLPTLGLAKAIGAEWDYQQTDGIRPFMMPLMKLACTALERVPLTRPKIIEHLMKKFNQDLVFCRAPADNDLTSGVHERQVQKIDPLLKWVESEFGFKPVVYSSFFGGKQEDGLIKTVENLMKKTDDYELAAIDAIAAAAHSLVIAIGIFRGKLQIEEAIELIRLEEDLQVDKWGLVEGGHDIDIADLRVQISSATVFLGLSRRN
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	332	2.2.26 [Sep-21-2011]
Q8N5M1	289	ATP synthase mitochondria	yes	no	0.683	0.785	0.312	3e-27
Q91YY4	289	ATP synthase mitochondria	yes	no	0.683	0.785	0.303	6e-26
Q1LZ96	289	ATP synthase mitochondria	yes	no	0.683	0.785	0.308	8e-25
Q9UT16	291	Protein atp12, mitochondr	yes	no	0.677	0.773	0.245	5e-15
P22135	325	Protein ATP12, mitochondr	yes	no	0.704	0.72	0.218	6e-05

>sp|Q8N5M1|ATPF2_HUMAN ATP synthase mitochondrial F1 complex assembly factor 2 OS=Homo sapiens GN=ATPAF2 PE=1 SV=1

 Score =  122 bits (307), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 74/237 (31%), Positives = 126/237 (53%), Gaps = 10/237 (4%)

Query: 94  KRFYEKVSTREADDGNGWTVMLDYRTLKTPSKRPLKLPTLGLAKAIGAEWDYQQTDGIRP 153
           KRFY+ VS  + +   G+ + LD+R LKTP  +   +P+  LA A+  EWD QQ D I+ 
Sbjct: 47  KRFYQNVSITQGE--GGFEINLDHRKLKTPQAKLFTVPSEALAIAVATEWDSQQ-DTIKY 103

Query: 154 FMMPLMKLACTALERVPLTRPK--IIEHLMKKFNQDLVFCRAPADNDLTSGVHERQVQKI 211
           + M L  L  T+L+  P  R K  +I   +K  + D +  R      L     E Q  + 
Sbjct: 104 YTMHLTTLCNTSLDN-PTQRNKDQLIRAAVKFLDTDTICYRVEEPETLV----ELQRNEW 158

Query: 212 DPLLKWVESEFGFKPVVYSSFFGGKQEDGLIKTVENLMKKTDDYELAAIDAIAAAAHSLV 271
           DP+++W E  +G +    +S  G        + + + +   + + L  I+ +AA   S+V
Sbjct: 159 DPIIEWAEKRYGVEISSSTSIMGPSIPAKTREVLVSHLASYNTWALQGIEFVAAQLKSMV 218

Query: 272 IAIGIFRGKLQIEEAIELIRLEEDLQVDKWGLVEGGHDIDIADLRVQISSATVFLGL 328
           + +G+   +L +E+A+ L RLEE+ Q+ KWG +E  HD ++ +LR + ++ T+F+ L
Sbjct: 219 LTLGLIDLRLTVEQAVLLSRLEEEYQIQKWGNIEWAHDYELQELRARTAAGTLFIHL 275

May play a role in the assembly of the F1 component of the mitochondrial ATP synthase (ATPase).
Homo sapiens (taxid: 9606)

>sp|Q91YY4|ATPF2_MOUSE ATP synthase mitochondrial F1 complex assembly factor 2 OS=Mus musculus GN=Atpaf2 PE=2 SV=1

 Score =  118 bits (296), Expect = 6e-26,   Method: Compositional matrix adjust.
 Identities = 72/237 (30%), Positives = 125/237 (52%), Gaps = 10/237 (4%)

Query: 94  KRFYEKVSTREADDGNGWTVMLDYRTLKTPSKRPLKLPTLGLAKAIGAEWDYQQTDGIRP 153
           KRFY+ VS  + +   G+ + LD+R LKTP  +   +P+  LA A+  EWD QQ D I+ 
Sbjct: 47  KRFYQNVSISQGE--GGFEINLDHRKLKTPQAKLFTVPSEALAIAVATEWDSQQ-DTIKF 103

Query: 154 FMMPLMKLACTALERVPLTRPK--IIEHLMKKFNQDLVFCRAPADNDLTSGVHERQVQKI 211
           + M L  L  T+L+  P  R K  +I   +K  + D +  R      L     E Q  + 
Sbjct: 104 YTMHLTTLCNTSLDN-PTQRSKDQLIRAAVKFLDTDTICYRVEEPETLV----ELQKNEW 158

Query: 212 DPLLKWVESEFGFKPVVYSSFFGGKQEDGLIKTVENLMKKTDDYELAAIDAIAAAAHSLV 271
           DP+++W E  +G +    +S  G        + + + +   + + L  I+ + A   S++
Sbjct: 159 DPVIEWAEKRYGMEIGSSTSIMGPSIPTQTREVLTSHLSSYNMWALQGIEFVVAQLKSML 218

Query: 272 IAIGIFRGKLQIEEAIELIRLEEDLQVDKWGLVEGGHDIDIADLRVQISSATVFLGL 328
           + +G+   +L +E+A+ L RLEE+ Q+ KWG +E  HD ++ +LR + ++ T+F+ L
Sbjct: 219 LTLGLIDLRLTVEQAVLLSRLEEEYQIQKWGNIEWAHDYELQELRARTAAGTLFVHL 275

May play a role in the assembly of the F1 component of the mitochondrial ATP synthase (ATPase).

Mus musculus (taxid: 10090)

>sp|Q1LZ96|ATPF2_BOVIN ATP synthase mitochondrial F1 complex assembly factor 2 OS=Bos taurus GN=ATPAF2 PE=2 SV=1

 Score =  114 bits (286), Expect = 8e-25,   Method: Compositional matrix adjust.
 Identities = 73/237 (30%), Positives = 123/237 (51%), Gaps = 10/237 (4%)

Query: 94  KRFYEKVSTREADDGNGWTVMLDYRTLKTPSKRPLKLPTLGLAKAIGAEWDYQQTDGIRP 153
           KRFY+ VS  + +   G+ + LD+R L+TP  +   +P+  LA A+  EWD QQ D I+ 
Sbjct: 47  KRFYQNVSISQGE--GGFEINLDHRKLRTPQGKLFTVPSEALAIAVATEWDSQQ-DTIKM 103

Query: 154 FMMPLMKLACTALERVPLTRPK--IIEHLMKKFNQDLVFCRAPADNDLTSGVHERQVQKI 211
           + M L  L  T+L+  P  R K  +I   +K  + D V  R      L     E Q  + 
Sbjct: 104 YTMHLTTLCNTSLDN-PTQRDKDQLIRAAVKFLDTDTVCYRVEEPETLV----ELQRNEW 158

Query: 212 DPLLKWVESEFGFKPVVYSSFFGGKQEDGLIKTVENLMKKTDDYELAAIDAIAAAAHSLV 271
           DP++ W E  +G +    +S  G        + + + +   + + L  I+ +     SLV
Sbjct: 159 DPVISWAEKRYGVEIGSSTSITGPSIPARTREVLVSHLASYNMWALQGIEFVVTQLKSLV 218

Query: 272 IAIGIFRGKLQIEEAIELIRLEEDLQVDKWGLVEGGHDIDIADLRVQISSATVFLGL 328
           + +G+   +L +E+A+ L RLEE+ Q+ KWG +E  HD ++ +LR + ++ T+F+ L
Sbjct: 219 LTLGLTDLRLTVEQAVLLSRLEEEYQIQKWGNIEWAHDYELQELRARTAAGTLFVHL 275

May play a role in the assembly of the F1 component of the mitochondrial ATP synthase (ATPase).

Bos taurus (taxid: 9913)

>sp|Q9UT16|ATP12_SCHPO Protein atp12, mitochondrial OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=atp12 PE=3 SV=2

 Score = 82.0 bits (201), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 60/244 (24%), Positives = 116/244 (47%), Gaps = 19/244 (7%)

Query: 94  KRFYEKVSTREADDGNGWTVMLDYRTLKTPSKRPLKLPTLG--LAKAIGAEWDYQQTDGI 151
           +RF++  +T+   +G    + LD R LK+PS + +K+P     LA  I  EWD   +  +
Sbjct: 39  RRFWKNTATK-IQNGEV-LIQLDGRNLKSPSGKIVKVPKEMELLAHLIALEWDRLPSTSV 96

Query: 152 RPFMMPLMKLACTALERVPLTRPK---IIEHLMKKFNQDLVFCRAPADNDLTSGVHERQV 208
           R   +P+  L   A++     + +   +   L++  + D +   +P + +    + E Q 
Sbjct: 97  RQHNLPITSLVSRAIDISQFKKEEKELLSTQLIRFLDTDTILIYSP-ETEYEGKLLEEQK 155

Query: 209 QKIDPLLKWVESEFGFKPVVYSSFFGG-------KQEDGLIKTVENLMKKTDDYELAAID 261
           +   PL +  E++ G    V  S+  G       KQ     + + N +   + ++LAA +
Sbjct: 156 ENWWPLKETFENKLG----VQLSYLDGDAGIIAHKQTQETHERIRNWLSSLNSWQLAAFE 211

Query: 262 AIAAAAHSLVIAIGIFRGKLQIEEAIELIRLEEDLQVDKWGLVEGGHDIDIADLRVQISS 321
              +   S +++  I +G L  E+A  L  LE   Q ++WG +E  H+ID  DL+ +++S
Sbjct: 212 RSVSCCKSFIVSFMILKGYLNSEKAAALTNLELQYQTNRWGSLEDAHEIDNEDLKNKLAS 271

Query: 322 ATVF 325
           + + 
Sbjct: 272 SAIL 275

Essential for the assembly of the mitochondrial F1-F0 complex.

Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812)

>sp|P22135|ATP12_YEAST Protein ATP12, mitochondrial OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=ATP12 PE=1 SV=2

 Score = 48.5 bits (114), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 60/274 (21%), Positives = 108/274 (39%), Gaps = 40/274 (14%)

Query: 90  SIVGKRFYEKVSTREADDGNGWTVMLDYRTLKTPSKRPLKLPTLG--LAKAIGAEWDYQQ 147
           S   ++F+EKVS     +     + LD RT+KTP    + +      LA  +  EW    
Sbjct: 48  SKTSQKFWEKVSLNRDVEKGKIALQLDGRTIKTPLGNGIIVDNAKSLLAYLLKLEWSSLS 107

Query: 148 TDGIRPFMMPLMKLA--CTALERV--PLTRPKII-----------EHLMKKFNQDLVFCR 192
           +  I+   +PL  L   C  L+    P   P+++             L++  + D +   
Sbjct: 108 SLSIKTHSLPLTSLVARCIDLQMTNEPGCDPQLVAKIGGNSDVIKNQLLRYLDTDTLLVF 167

Query: 193 APADNDLTSGVHERQVQKIDPLLKWVE-------SEFGFKPVVYSS----FFGGKQEDGL 241
           +P  N+    +   Q +   P++K +E       SE   +  +  +      G +Q D +
Sbjct: 168 SPM-NEFEGRLRNAQNELYIPIIKGMEEFLRNFSSESNIRLQILDADIHGLRGNQQSDIV 226

Query: 242 IKTVENLMKKTDDYELAAIDAIAAAAHSLVIAIGIFRGKLQIEEAIELIR---------- 291
               +  M     ++LA ++       S +  + +   K      I  ++          
Sbjct: 227 KNAAKKYMSSLSPWDLAILEKTVLTTKSFICGVLLLENKKDTANLIPALKTDMDNIVRAA 286

Query: 292 -LEEDLQVDKWGLVEGGHDIDIADLRVQISSATV 324
            LE   QV+KWG VE  HD+D  D+R +I +A +
Sbjct: 287 TLETIFQVEKWGEVEDTHDVDKRDIRRKIHTAAI 320

Essential for the assembly of the mitochondrial F1-F0 complex.

Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (taxid: 559292)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	332
255572002	334	ATP synthase mitochondrial F1 complex as	0.990	0.985	0.763	1e-135
118488474	330	unknown [Populus trichocarpa]	0.969	0.975	0.710	1e-134
225452226	328	PREDICTED: ATP synthase mitochondrial F1	0.984	0.996	0.740	1e-133
449455898	330	PREDICTED: ATP synthase mitochondrial F1	0.984	0.990	0.744	1e-131
307136314	329	ATP12-like protein [Cucumis melo subsp.	0.981	0.990	0.744	1e-131
356558787	326	PREDICTED: ATP synthase mitochondrial F1	0.954	0.972	0.721	1e-127
224060183	270	predicted protein [Populus trichocarpa]	0.786	0.966	0.812	1e-126
388518015	321	unknown [Medicago truncatula]	0.957	0.990	0.716	1e-125
21592835	325	unknown [Arabidopsis thaliana]	0.957	0.978	0.681	1e-124
15237466	325	ATP synthase mitochondrial F1 complex as	0.957	0.978	0.678	1e-123

>gi|255572002|ref|XP_002526942.1| ATP synthase mitochondrial F1 complex assembly factor 2, mitochondrial precursor, putative [Ricinus communis] gi|223533694|gb|EEF35429.1| ATP synthase mitochondrial F1 complex assembly factor 2, mitochondrial precursor, putative [Ricinus communis]

 Score =  488 bits (1256), Expect = e-135,   Method: Compositional matrix adjust.
 Identities = 255/334 (76%), Positives = 284/334 (85%), Gaps = 5/334 (1%)

Query: 1   MAASLIPKTLQSIRNPNAISSFTTFRTRHLCSVATVHQSPQYDDDPTSSFTFSSPSDKIN 60
           MA SLI KTL SI+NP  +S  ++  T H  + AT   + Q  D P+S FTF+  +   N
Sbjct: 1   MATSLITKTLNSIKNPRLLSPLSSSVTHHFTTAATAATAAQ-SDGPSSPFTFTDTATSTN 59

Query: 61  ESIYIK----GRKQETASSSSSSVTMPMSFMTGSIVGKRFYEKVSTREADDGNGWTVMLD 116
            SI++K      + E  S SSSSVTMPMSFMTGSIVGKRFY+KV+TREADDG G+TVMLD
Sbjct: 60  NSIHMKTPNPDARGEATSFSSSSVTMPMSFMTGSIVGKRFYKKVTTREADDGIGYTVMLD 119

Query: 117 YRTLKTPSKRPLKLPTLGLAKAIGAEWDYQQTDGIRPFMMPLMKLACTALERVPLTRPKI 176
           YRTLKTPSK+PLKLPTL LAKAI AEWD QQTDGIRPF MPLMKLACTALERVPLTR KI
Sbjct: 120 YRTLKTPSKKPLKLPTLSLAKAIAAEWDCQQTDGIRPFTMPLMKLACTALERVPLTRLKI 179

Query: 177 IEHLMKKFNQDLVFCRAPADNDLTSGVHERQVQKIDPLLKWVESEFGFKPVVYSSFFGGK 236
           IE+LMKKFNQDLVFCRAP DNDLTSGV+ERQV+KIDPLL WV+SEFGFKPVVYSSFFGGK
Sbjct: 180 IENLMKKFNQDLVFCRAPEDNDLTSGVYERQVEKIDPLLDWVKSEFGFKPVVYSSFFGGK 239

Query: 237 QEDGLIKTVENLMKKTDDYELAAIDAIAAAAHSLVIAIGIFRGKLQIEEAIELIRLEEDL 296
           QE+GL+K +E+L+KKTD+ ELAAIDAIAA+AHSLVIAIGI RGKL IEEAI+LIRLEEDL
Sbjct: 240 QEEGLVKAIEDLLKKTDNCELAAIDAIAASAHSLVIAIGIVRGKLDIEEAIQLIRLEEDL 299

Query: 297 QVDKWGLVEGGHDIDIADLRVQISSATVFLGLSR 330
           QVD+WGLVEGGHDIDIADLRVQISSA VFLGLSR
Sbjct: 300 QVDRWGLVEGGHDIDIADLRVQISSAAVFLGLSR 333

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|118488474|gb|ABK96051.1| unknown [Populus trichocarpa]

 Score =  484 bits (1245), Expect = e-134,   Method: Compositional matrix adjust.
 Identities = 241/339 (71%), Positives = 273/339 (80%), Gaps = 17/339 (5%)

Query: 1   MAASLIPKTLQSIRNPNAISSFTTFRTRHLCSVATVHQSPQYDDDPTSSFTFSSPSDKIN 60
           MA SLI KTL SI+NP  +   T    R   S+ATV       ++P+SSFTF+      +
Sbjct: 1   MATSLITKTLNSIKNPKLLRPLT----RQFTSIATVQS-----ENPSSSFTFADSDSNSS 51

Query: 61  ES-----IYIKGRKQET---ASSSSSSVTMPMSFMTGSIVGKRFYEKVSTREADDGNGWT 112
            S     IY++             SSSVTMPMS MTGSIVGKRFY++V+TREADDGNGW 
Sbjct: 52  SSCNDSNIYMRKGPPNCNVKGEKDSSSVTMPMSSMTGSIVGKRFYKQVTTREADDGNGWN 111

Query: 113 VMLDYRTLKTPSKRPLKLPTLGLAKAIGAEWDYQQTDGIRPFMMPLMKLACTALERVPLT 172
           VMLDYRTLKTPSKRPLKLPTL LAKAI AEWDYQQTDGIRPF MPLMKLACTAL+RVPLT
Sbjct: 112 VMLDYRTLKTPSKRPLKLPTLALAKAIAAEWDYQQTDGIRPFTMPLMKLACTALDRVPLT 171

Query: 173 RPKIIEHLMKKFNQDLVFCRAPADNDLTSGVHERQVQKIDPLLKWVESEFGFKPVVYSSF 232
           RPKIIEHLMKKF+QDLVFCRAP DN LTSGV+ERQV+K DPL+ W++SEFGFKPVV+S  
Sbjct: 172 RPKIIEHLMKKFSQDLVFCRAPEDNVLTSGVYERQVEKFDPLIGWIKSEFGFKPVVHSCL 231

Query: 233 FGGKQEDGLIKTVENLMKKTDDYELAAIDAIAAAAHSLVIAIGIFRGKLQIEEAIELIRL 292
           FGGKQE+GL+K +ENL+K+TDD +LA IDAIA+AAHSL+IA+GI +GKL IEEAIELIRL
Sbjct: 232 FGGKQEEGLVKAIENLLKQTDDCQLAVIDAIASAAHSLIIAVGIVKGKLDIEEAIELIRL 291

Query: 293 EEDLQVDKWGLVEGGHDIDIADLRVQISSATVFLGLSRR 331
           EED QVD WGLVEGGHDIDIADLRVQISSA VFLGLSR+
Sbjct: 292 EEDFQVDTWGLVEGGHDIDIADLRVQISSAAVFLGLSRK 330

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225452226|ref|XP_002268368.1| PREDICTED: ATP synthase mitochondrial F1 complex assembly factor 2 [Vitis vinifera] gi|296081322|emb|CBI17704.3| unnamed protein product [Vitis vinifera]

 Score =  482 bits (1240), Expect = e-133,   Method: Compositional matrix adjust.
 Identities = 245/331 (74%), Positives = 284/331 (85%), Gaps = 4/331 (1%)

Query: 1   MAASLIPKTLQSIRNPNAISSFTTFRTRHLCSVATVHQSPQYDDDPTSSFTFSSPSDKIN 60
           MA++++ KTL SI+NP  +   ++  T    +VAT  ++P+  +  +SSFTF+  +   +
Sbjct: 1   MASAVMKKTLTSIKNPLILRGLSS-HTLRFSAVATA-RNPE-SEGASSSFTFNEKNSDKD 57

Query: 61  ESIYIKGRKQETASSSSSSVTMPMSFMTGSIVGKRFYEKVSTREADDGNGWTVMLDYRTL 120
           +SI++KG         ++SVTMPMSFMTGSIVGKRFY++ STREADDGNGWTVMLDYRTL
Sbjct: 58  DSIHVKG-PSSNPRRETTSVTMPMSFMTGSIVGKRFYKQASTREADDGNGWTVMLDYRTL 116

Query: 121 KTPSKRPLKLPTLGLAKAIGAEWDYQQTDGIRPFMMPLMKLACTALERVPLTRPKIIEHL 180
           KTPSKRPLKLPTL LAKAI AEW+YQQTDGIRPF MPLMKLACTALERVPLTR KIIE+L
Sbjct: 117 KTPSKRPLKLPTLSLAKAIAAEWEYQQTDGIRPFTMPLMKLACTALERVPLTRMKIIEYL 176

Query: 181 MKKFNQDLVFCRAPADNDLTSGVHERQVQKIDPLLKWVESEFGFKPVVYSSFFGGKQEDG 240
           MKKF+QDLVFCRAP D+DLT GV ERQV+KIDPLL+WVES+FGFKP+VYSSFFGGKQEDG
Sbjct: 177 MKKFHQDLVFCRAPGDSDLTIGVLERQVEKIDPLLQWVESQFGFKPIVYSSFFGGKQEDG 236

Query: 241 LIKTVENLMKKTDDYELAAIDAIAAAAHSLVIAIGIFRGKLQIEEAIELIRLEEDLQVDK 300
           L+  +ENL+KKTDD ELAAIDAIA+AAHSL IAIGIFRGKLQIEEAIELIRLEEDLQVDK
Sbjct: 237 LVNAIENLLKKTDDCELAAIDAIASAAHSLTIAIGIFRGKLQIEEAIELIRLEEDLQVDK 296

Query: 301 WGLVEGGHDIDIADLRVQISSATVFLGLSRR 331
           WGLVEGGHD+D+ADL+VQISSA  FLGLSRR
Sbjct: 297 WGLVEGGHDVDVADLKVQISSAAAFLGLSRR 327

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449455898|ref|XP_004145687.1| PREDICTED: ATP synthase mitochondrial F1 complex assembly factor 2-like [Cucumis sativus] gi|449492905|ref|XP_004159136.1| PREDICTED: ATP synthase mitochondrial F1 complex assembly factor 2-like [Cucumis sativus]

 Score =  473 bits (1217), Expect = e-131,   Method: Compositional matrix adjust.
 Identities = 248/333 (74%), Positives = 286/333 (85%), Gaps = 6/333 (1%)

Query: 1   MAASLIPKTLQSIRNPN-AISSFTTFRTRHLC-SVATVHQSPQYDDDPTSSFTFSSPSDK 58
           M++S++ K  +SIR  N  +S   +FR R LC SVAT  +    DD   +SFTFS+ + +
Sbjct: 1   MSSSILSKMAKSIRITNPTLSPSHSFRYRMLCTSVATAAEQSPLDD---TSFTFSNDNPR 57

Query: 59  INESIYIKGRKQETASSSSSSVTMPMSFMTGSIVGKRFYEKVSTREADDGNGWTVMLDYR 118
            +E +++K  +  ++S SSSSVTMP SFMTGSIVGKRFY+KV+TREADD NGW VMLDYR
Sbjct: 58  -DEPVFVKAPRSNSSSRSSSSVTMPTSFMTGSIVGKRFYQKVTTREADDRNGWAVMLDYR 116

Query: 119 TLKTPSKRPLKLPTLGLAKAIGAEWDYQQTDGIRPFMMPLMKLACTALERVPLTRPKIIE 178
           TLKTP+KRPLKLPTLGLAKA+ AEW+YQ+TDGIRPF MPLMKLACTALERVPLTR  IIE
Sbjct: 117 TLKTPTKRPLKLPTLGLAKAVAAEWEYQETDGIRPFTMPLMKLACTALERVPLTRHTIIE 176

Query: 179 HLMKKFNQDLVFCRAPADNDLTSGVHERQVQKIDPLLKWVESEFGFKPVVYSSFFGGKQE 238
           HL+KKFN DLVFCRAP +N LTSGV+ERQV+KIDPLL WV SEFGFKP+VYSSFFGG QE
Sbjct: 177 HLIKKFNSDLVFCRAPEENVLTSGVYERQVEKIDPLLDWVHSEFGFKPIVYSSFFGGNQE 236

Query: 239 DGLIKTVENLMKKTDDYELAAIDAIAAAAHSLVIAIGIFRGKLQIEEAIELIRLEEDLQV 298
           DGLIK VE+L+KKT+D ELA+IDAIA+AAHSL+IAIGIFRGKLQIEEAIELIRLEEDLQV
Sbjct: 237 DGLIKAVEDLLKKTNDCELASIDAIASAAHSLIIAIGIFRGKLQIEEAIELIRLEEDLQV 296

Query: 299 DKWGLVEGGHDIDIADLRVQISSATVFLGLSRR 331
           DKWGLVEGGHD+DIADL+VQISSATVFL LSRR
Sbjct: 297 DKWGLVEGGHDVDIADLQVQISSATVFLALSRR 329

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|307136314|gb|ADN34137.1| ATP12-like protein [Cucumis melo subsp. melo]

 Score =  473 bits (1217), Expect = e-131,   Method: Compositional matrix adjust.
 Identities = 248/333 (74%), Positives = 284/333 (85%), Gaps = 7/333 (2%)

Query: 1   MAASLIPKTLQSIR--NPNAISSFTTFRTRHLCSVATVHQSPQYDDDPTSSFTFSSPSDK 58
           M+ S++    +SIR  NP    S + FR R LC+  +V  +P+      +SFTFS+ + +
Sbjct: 1   MSTSILSIMAKSIRITNPTLTPSHS-FRYRMLCT--SVATAPEQSPSDAASFTFSNDNPR 57

Query: 59  INESIYIKGRKQETASSSSSSVTMPMSFMTGSIVGKRFYEKVSTREADDGNGWTVMLDYR 118
             E ++IK  +  ++S SSSSVTMP SFMTGSIVGKRFY+KV+TREADDGNGWTVMLDYR
Sbjct: 58  -EEPVFIKAPRSNSSSPSSSSVTMPTSFMTGSIVGKRFYQKVTTREADDGNGWTVMLDYR 116

Query: 119 TLKTPSKRPLKLPTLGLAKAIGAEWDYQQTDGIRPFMMPLMKLACTALERVPLTRPKIIE 178
           TLKTP+KRPLKLPTLGLAKA+ AEW+YQ+TDGIRPF MPLMKLACTALERVPLTRPKIIE
Sbjct: 117 TLKTPTKRPLKLPTLGLAKAVAAEWEYQETDGIRPFTMPLMKLACTALERVPLTRPKIIE 176

Query: 179 HLMKKFNQDLVFCRAPADNDLTSGVHERQVQKIDPLLKWVESEFGFKPVVYSSFFGGKQE 238
           HLM KFN+DLVFCRAP D DLTSGV+ERQV+KIDPLL WV SEFGFKP+VYSS FGG QE
Sbjct: 177 HLMGKFNRDLVFCRAPED-DLTSGVYERQVEKIDPLLDWVHSEFGFKPIVYSSLFGGNQE 235

Query: 239 DGLIKTVENLMKKTDDYELAAIDAIAAAAHSLVIAIGIFRGKLQIEEAIELIRLEEDLQV 298
           DGLIK VE+L++KTDD ELA+IDAIA+AAHSL+IAIGIFRGKLQIEEAIELIRLEED QV
Sbjct: 236 DGLIKAVEDLLRKTDDCELASIDAIASAAHSLIIAIGIFRGKLQIEEAIELIRLEEDFQV 295

Query: 299 DKWGLVEGGHDIDIADLRVQISSATVFLGLSRR 331
           DKWGLVEGGHD+DIADL+VQISSATVFL LSRR
Sbjct: 296 DKWGLVEGGHDVDIADLQVQISSATVFLALSRR 328

Source: Cucumis melo subsp. melo

Species: Cucumis melo

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356558787|ref|XP_003547684.1| PREDICTED: ATP synthase mitochondrial F1 complex assembly factor 2-like [Glycine max]

 Score =  461 bits (1185), Expect = e-127,   Method: Compositional matrix adjust.
 Identities = 243/337 (72%), Positives = 276/337 (81%), Gaps = 20/337 (5%)

Query: 1   MAASLIPKTLQSIRNPNAISSFTTFRT----RHLCSVATVHQSPQYDDDPT---SSFTFS 53
           MA SLI K ++    P  ++  T        R L SVA        D+DP    SSFTFS
Sbjct: 1   MAHSLIRKCIK----PATLNFLTPLAVPEIRRRLASVAAAA-----DEDPPQSPSSFTFS 51

Query: 54  SPSDKINESIYIKGRKQETASSSSSSVTMPMSFMTGSIVGKRFYEKVSTREADDGNGWTV 113
           S  +K+    Y+K    +   S SS+VTMPMSFMTGSIVGKRFY++V TREADDGNGWTV
Sbjct: 52  SEGEKV----YVKPPAGKWKPSPSSTVTMPMSFMTGSIVGKRFYKEVKTREADDGNGWTV 107

Query: 114 MLDYRTLKTPSKRPLKLPTLGLAKAIGAEWDYQQTDGIRPFMMPLMKLACTALERVPLTR 173
           MLDYRTLKTPSKRPLKLP+L LAKAI AEW+YQQTDGIRPF MPLM+LACTALERVPLTR
Sbjct: 108 MLDYRTLKTPSKRPLKLPSLPLAKAIAAEWEYQQTDGIRPFTMPLMRLACTALERVPLTR 167

Query: 174 PKIIEHLMKKFNQDLVFCRAPADNDLTSGVHERQVQKIDPLLKWVESEFGFKPVVYSSFF 233
            K+IE+LMKKFNQDLVFCRAP D++LTS VH RQV+KIDPLL+WVESEFGFKPV+Y+SFF
Sbjct: 168 SKVIENLMKKFNQDLVFCRAPDDDELTSYVHARQVEKIDPLLRWVESEFGFKPVLYTSFF 227

Query: 234 GGKQEDGLIKTVENLMKKTDDYELAAIDAIAAAAHSLVIAIGIFRGKLQIEEAIELIRLE 293
           GGKQEDGL+  +ENL+KKTDD ELAAIDAIAA+AHSL+IAIG+ +GKLQIEEAIELIRLE
Sbjct: 228 GGKQEDGLVMAIENLLKKTDDCELAAIDAIAASAHSLIIAIGMVQGKLQIEEAIELIRLE 287

Query: 294 EDLQVDKWGLVEGGHDIDIADLRVQISSATVFLGLSR 330
           ED QVD+WGLVEGGHD+DIADLRVQ+SSA VFLGLSR
Sbjct: 288 EDSQVDRWGLVEGGHDVDIADLRVQVSSAIVFLGLSR 324

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224060183|ref|XP_002300073.1| predicted protein [Populus trichocarpa] gi|222847331|gb|EEE84878.1| predicted protein [Populus trichocarpa]

 Score =  457 bits (1175), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 217/267 (81%), Positives = 240/267 (89%), Gaps = 6/267 (2%)

Query: 65  IKGRKQETASSSSSSVTMPMSFMTGSIVGKRFYEKVSTREADDGNGWTVMLDYRTLKTPS 124
           +KG K       SSSVTMPMS MTGSIVGKRFY++V+TREADDGNGW VMLDYRTLKTPS
Sbjct: 10  VKGEK------DSSSVTMPMSSMTGSIVGKRFYKQVTTREADDGNGWNVMLDYRTLKTPS 63

Query: 125 KRPLKLPTLGLAKAIGAEWDYQQTDGIRPFMMPLMKLACTALERVPLTRPKIIEHLMKKF 184
           KRPLKLPTL LAKAI AEWDYQQTDGIRPF MPLMKLACTAL+RVPLTRPKIIEHLMKKF
Sbjct: 64  KRPLKLPTLALAKAIAAEWDYQQTDGIRPFTMPLMKLACTALDRVPLTRPKIIEHLMKKF 123

Query: 185 NQDLVFCRAPADNDLTSGVHERQVQKIDPLLKWVESEFGFKPVVYSSFFGGKQEDGLIKT 244
           +QDLVFCRAP DN LTSGV+ERQV+K DPL+ W++SEFGFKPVV+S  FGGKQE+GL+K 
Sbjct: 124 SQDLVFCRAPEDNVLTSGVYERQVEKFDPLIGWIKSEFGFKPVVHSCLFGGKQEEGLVKA 183

Query: 245 VENLMKKTDDYELAAIDAIAAAAHSLVIAIGIFRGKLQIEEAIELIRLEEDLQVDKWGLV 304
           +ENL+K+TDD +LA IDAIA+AAHSL+IA+GI +GKL IEEAIELIRLEED QVD WGLV
Sbjct: 184 IENLLKQTDDCQLAVIDAIASAAHSLIIAVGIVKGKLDIEEAIELIRLEEDFQVDTWGLV 243

Query: 305 EGGHDIDIADLRVQISSATVFLGLSRR 331
           EGGHDIDIADLRVQISSA VFLGLSR+
Sbjct: 244 EGGHDIDIADLRVQISSAAVFLGLSRK 270

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388518015|gb|AFK47069.1| unknown [Medicago truncatula]

 Score =  455 bits (1171), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 237/331 (71%), Positives = 269/331 (81%), Gaps = 13/331 (3%)

Query: 1   MAASLIPKTLQSIRNPNAISSFTTFR-TRHLCSVATVHQSPQYDDDPTSSFTFSSPSDKI 59
           MA SLI  +++SI NP  +S+ +  R  R   S A        D++ +SSFTFSS  D I
Sbjct: 1   MAHSLIKNSIKSI-NPKFLSTLSAHRIVRRFGSAAAA------DEEQSSSFTFSSEGDSI 53

Query: 60  NESIYIKGRKQETASSSSSSVTMPMSFMTGSIVGKRFYEKVSTREADDGNGWTVMLDYRT 119
                   R++      SSSVTMP+SFMTGSIVGKRFY++V T+EADDGNGWTVMLDYRT
Sbjct: 54  QLKSPSAARRK-----LSSSVTMPISFMTGSIVGKRFYKEVKTKEADDGNGWTVMLDYRT 108

Query: 120 LKTPSKRPLKLPTLGLAKAIGAEWDYQQTDGIRPFMMPLMKLACTALERVPLTRPKIIEH 179
           LKTP+KRPLKLPT+ LAKAI AEWDYQQ DGIRPF MPLM+LACTALERVP+TRPKIIEH
Sbjct: 109 LKTPAKRPLKLPTVALAKAIAAEWDYQQIDGIRPFTMPLMRLACTALERVPVTRPKIIEH 168

Query: 180 LMKKFNQDLVFCRAPADNDLTSGVHERQVQKIDPLLKWVESEFGFKPVVYSSFFGGKQED 239
           L++KFNQDLVFCRAP DN+L S V+ERQV KIDPLL W+ESEFGFKPVVYSSFFGGKQED
Sbjct: 169 LVEKFNQDLVFCRAPDDNELASLVYERQVDKIDPLLHWLESEFGFKPVVYSSFFGGKQED 228

Query: 240 GLIKTVENLMKKTDDYELAAIDAIAAAAHSLVIAIGIFRGKLQIEEAIELIRLEEDLQVD 299
           GL+  +E L+KKTDD ELAAIDAIAA+A SL IAI +  G+LQIEEAIELIRLEEDLQVD
Sbjct: 229 GLVMAIEKLLKKTDDCELAAIDAIAASAQSLTIAIALVHGRLQIEEAIELIRLEEDLQVD 288

Query: 300 KWGLVEGGHDIDIADLRVQISSATVFLGLSR 330
           +WGLVEGGHDIDIAD+RVQISS  VFLGLSR
Sbjct: 289 RWGLVEGGHDIDIADIRVQISSPVVFLGLSR 319

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|21592835|gb|AAM64785.1| unknown [Arabidopsis thaliana]

 Score =  449 bits (1156), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 231/339 (68%), Positives = 264/339 (77%), Gaps = 21/339 (6%)

Query: 1   MAASLIPKTLQSIRNPNAISSFTTFRTRHLCSVATVHQSPQYDDDPTSS---FTFSSPSD 57
           MAA LI +  +S RN N        R R LC+ +   Q P  D  P+ S   FTF   ++
Sbjct: 1   MAAMLIGRAFKSARNSN-----LAIRARSLCTTSAARQ-PDSDTQPSESSSSFTFEKENE 54

Query: 58  KINESIYIKG----RKQETASSSSSSVTMPMSFMTGSIVGKRFYEKVSTREADDGNGWTV 113
           K    I +K     RK E     S SVTMP SFMTGSIVGKRFY+KV+TREADDGNGWTV
Sbjct: 55  K---PILVKAPNSRRKNE-----SDSVTMPTSFMTGSIVGKRFYKKVTTREADDGNGWTV 106

Query: 114 MLDYRTLKTPSKRPLKLPTLGLAKAIGAEWDYQQTDGIRPFMMPLMKLACTALERVPLTR 173
           MLDYRTLKTPSKRPLKL +L LAKAI AEW+YQ T+GIRPF MPLM+LACTALERVPLTR
Sbjct: 107 MLDYRTLKTPSKRPLKLRSLALAKAIAAEWEYQLTEGIRPFTMPLMRLACTALERVPLTR 166

Query: 174 PKIIEHLMKKFNQDLVFCRAPADNDLTSGVHERQVQKIDPLLKWVESEFGFKPVVYSSFF 233
            KIIEHL +K +QDLVF RAP DNDLTS VH+ QV+ IDPLLKW+ESEF  KP VYSS F
Sbjct: 167 SKIIEHLSRKIHQDLVFFRAPEDNDLTSDVHDIQVESIDPLLKWIESEFRVKPKVYSSIF 226

Query: 234 GGKQEDGLIKTVENLMKKTDDYELAAIDAIAAAAHSLVIAIGIFRGKLQIEEAIELIRLE 293
           GGKQ+D L+K VE L+KKT+D ELA+IDA+ A+AHS+VIA+GIF GKLQI++AI+LIRLE
Sbjct: 227 GGKQDDKLVKAVEELLKKTNDGELASIDALQASAHSIVIALGIFCGKLQIDDAIKLIRLE 286

Query: 294 EDLQVDKWGLVEGGHDIDIADLRVQISSATVFLGLSRRN 332
           EDLQVDKWGLVEGGHDID+ADL+VQISSATVFL LSR N
Sbjct: 287 EDLQVDKWGLVEGGHDIDVADLKVQISSATVFLALSREN 325

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|15237466|ref|NP_198882.1| ATP synthase mitochondrial F1 complex assembly factor 2 [Arabidopsis thaliana] gi|14517426|gb|AAK62603.1| AT5g40660/MNF13_180 [Arabidopsis thaliana] gi|22655442|gb|AAM98313.1| At5g40660/MNF13_180 [Arabidopsis thaliana] gi|332007196|gb|AED94579.1| ATP synthase mitochondrial F1 complex assembly factor 2 [Arabidopsis thaliana]

 Score =  448 bits (1152), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 230/339 (67%), Positives = 264/339 (77%), Gaps = 21/339 (6%)

Query: 1   MAASLIPKTLQSIRNPNAISSFTTFRTRHLCSVATVHQSPQYDDDPTSS---FTFSSPSD 57
           MAA LI +  +S RN N        R R LC+ +   Q P  D  P+ S   FTF   ++
Sbjct: 1   MAAMLIGRAFKSARNSN-----LAIRARSLCTTSAARQ-PDSDTQPSESSSSFTFEKENE 54

Query: 58  KINESIYIKG----RKQETASSSSSSVTMPMSFMTGSIVGKRFYEKVSTREADDGNGWTV 113
           K    I +K     RK E     S SVTMP SFMTGSIVGKRFY+KV+TREADDGNGWTV
Sbjct: 55  K---PILVKAPNSRRKNE-----SDSVTMPTSFMTGSIVGKRFYKKVTTREADDGNGWTV 106

Query: 114 MLDYRTLKTPSKRPLKLPTLGLAKAIGAEWDYQQTDGIRPFMMPLMKLACTALERVPLTR 173
           MLDYRTLKTPSKRPLKL +L LAKAI AEW+YQ T+GIRPF MPLM+LACTALERVPLTR
Sbjct: 107 MLDYRTLKTPSKRPLKLRSLALAKAIAAEWEYQLTEGIRPFTMPLMRLACTALERVPLTR 166

Query: 174 PKIIEHLMKKFNQDLVFCRAPADNDLTSGVHERQVQKIDPLLKWVESEFGFKPVVYSSFF 233
            KIIEHL +K +QDLVF RAP DNDLTS VH+ QV+ IDPLL+W+ESEF  KP VYSS F
Sbjct: 167 SKIIEHLSRKIHQDLVFFRAPEDNDLTSDVHDIQVESIDPLLEWIESEFRVKPKVYSSIF 226

Query: 234 GGKQEDGLIKTVENLMKKTDDYELAAIDAIAAAAHSLVIAIGIFRGKLQIEEAIELIRLE 293
           GGKQ+D L+K VE L+KKT+D ELA+IDA+ A+AHS+VIA+GIF GKLQI++AI+LIRLE
Sbjct: 227 GGKQDDKLVKAVEELLKKTNDGELASIDALQASAHSIVIALGIFCGKLQIDDAIKLIRLE 286

Query: 294 EDLQVDKWGLVEGGHDIDIADLRVQISSATVFLGLSRRN 332
           EDLQVDKWGLVEGGHDID+ADL+VQISSATVFL LSR N
Sbjct: 287 EDLQVDKWGLVEGGHDIDVADLKVQISSATVFLALSREN 325

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	332
TAIR|locus:2168833	325	AT5G40660 [Arabidopsis thalian	0.978	1.0	0.590	6.8e-95
UNIPROTKB|Q8N5M1	289	ATPAF2 "ATP synthase mitochond	0.683	0.785	0.257	4.6e-18
MGI|MGI:2180561	289	Atpaf2 "ATP synthase mitochond	0.683	0.785	0.257	5.8e-18
RGD|1305161	298	Atpaf2 "ATP synthase mitochond	0.683	0.761	0.257	7.5e-18
UNIPROTKB|Q0C3G5	242	HNE_1005 "ATP12 chaperone fami	0.611	0.838	0.263	2.9e-16
UNIPROTKB|Q5LW25	238	SPO0518 "Uncharacterized prote	0.382	0.533	0.352	6e-16
TIGR_CMR|SPO_0518	238	SPO_0518 "conserved hypothetic	0.382	0.533	0.352	6e-16
UNIPROTKB|J9P3Y1	244	ATPAF2 "Uncharacterized protei	0.364	0.495	0.335	1e-15
UNIPROTKB|Q1LZ96	289	ATPAF2 "ATP synthase mitochond	0.367	0.422	0.340	2e-15
UNIPROTKB|F1PRK7	285	ATPAF2 "Uncharacterized protei	0.364	0.424	0.335	7.3e-15

TAIR|locus:2168833 AT5G40660 [Arabidopsis thaliana (taxid:3702)]

 Score = 944 (337.4 bits), Expect = 6.8e-95, P = 6.8e-95
 Identities = 196/332 (59%), Positives = 221/332 (66%)

Query:     1 MAASLIPKTLQSIRNPNAISSFTTFRTRHLCSVATVHQSPQYXXXXXXXXXXXXXXXKIN 60
             MAA LI +  +S RN N        R R LC+ +   Q P                 +  
Sbjct:     1 MAAMLIGRAFKSARNSNL-----AIRARSLCTTSAARQ-PDSDTQPSESSSSFTFEKENE 54

Query:    61 ESIYIKGRKQETAXXXXXXVTMPMSFMTGSIVGKRFYEKVSTREADDGNGWTVMLDYRTL 120
             + I +K             VTMP SFMTGSIVGKRFY+KV+TREADDGNGWTVMLDYRTL
Sbjct:    55 KPILVKAPNSRRKNESDS-VTMPTSFMTGSIVGKRFYKKVTTREADDGNGWTVMLDYRTL 113

Query:   121 KTPSKRPLKLPTLGLAKAIGAEWDYQQTDGIRPFMMPLMKLACTALERVPLTRPKIIEHL 180
             KTPSKRPLKL +L LAKAI AEW+YQ T+GIRPF MPLM+LACTALERVPLTR KIIEHL
Sbjct:   114 KTPSKRPLKLRSLALAKAIAAEWEYQLTEGIRPFTMPLMRLACTALERVPLTRSKIIEHL 173

Query:   181 MKKFNQDLVFCRAPADNDLTSGVHERQVQKIDPLLKWVESEFGFKPVVYSSFFGGKQEDG 240
              +K +QDLVF RAP DNDLTS VH+ QV+ IDPLL+W+ESEF  KP VYSS FGGKQ+D 
Sbjct:   174 SRKIHQDLVFFRAPEDNDLTSDVHDIQVESIDPLLEWIESEFRVKPKVYSSIFGGKQDDK 233

Query:   241 LIKTVENLMKKTDDYELXXXXXXXXXXXXXXXXXGIFRGKXXXXXXXXXXXXXXDLQVDK 300
             L+K VE L+KKT+D EL                 GIF GK              DLQVDK
Sbjct:   234 LVKAVEELLKKTNDGELASIDALQASAHSIVIALGIFCGKLQIDDAIKLIRLEEDLQVDK 293

Query:   301 WGLVEGGHDIDIADLRVQISSATVFLGLSRRN 332
             WGLVEGGHDID+ADL+VQISSATVFL LSR N
Sbjct:   294 WGLVEGGHDIDVADLKVQISSATVFLALSREN 325

GO:0005739 "mitochondrion" evidence=ISM;IDA

GO:0043461 "proton-transporting ATP synthase complex assembly" evidence=IEA

UNIPROTKB|Q8N5M1 ATPAF2 "ATP synthase mitochondrial F1 complex assembly factor 2" [Homo sapiens (taxid:9606)]

 Score = 219 (82.2 bits), Expect = 4.6e-18, P = 4.6e-18
 Identities = 61/237 (25%), Positives = 105/237 (44%)

Query:    94 KRFYEKVSTREADDGNGWTVMLDYRTLKTPSKRPLKLPTLGLAKAIGAEWDYQQTDGIRP 153
             KRFY+ VS  + +   G+ + LD+R LKTP  +   +P+  LA A+  EWD QQ D I+ 
Sbjct:    47 KRFYQNVSITQGE--GGFEINLDHRKLKTPQAKLFTVPSEALAIAVATEWDSQQ-DTIKY 103

Query:   154 FMMPLMKLACTALERVPLTRPK--IIEHLMKKFNQDLVFCRAPADNDLTSGVHERQVQKI 211
             + M L  L  T+L+  P  R K  +I   +K  + D +  R      L     E Q  + 
Sbjct:   104 YTMHLTTLCNTSLDN-PTQRNKDQLIRAAVKFLDTDTICYRVEEPETLV----ELQRNEW 158

Query:   212 DPLLKWVESEFGFKPVVYSSFFGGKQEDGLIKTVENLMKKTDDYELXXXXXXXXXXXXXX 271
             DP+++W E  +G +    +S  G        + + + +   + + L              
Sbjct:   159 DPIIEWAEKRYGVEISSSTSIMGPSIPAKTREVLVSHLASYNTWALQGIEFVAAQLKSMV 218

Query:   272 XXXGIFRGKXXXXXXXXXXXXXXDLQVDKWGLVEGGHDIDIADLRVQISSATVFLGL 328
                G+   +              + Q+ KWG +E  HD ++ +LR + ++ T+F+ L
Sbjct:   219 LTLGLIDLRLTVEQAVLLSRLEEEYQIQKWGNIEWAHDYELQELRARTAAGTLFIHL 275

GO:0005739 "mitochondrion" evidence=IEA

GO:0043461 "proton-transporting ATP synthase complex assembly" evidence=NAS

GO:0005515 "protein binding" evidence=IPI

GO:0016607 "nuclear speck" evidence=IDA

MGI|MGI:2180561 Atpaf2 "ATP synthase mitochondrial F1 complex assembly factor 2" [Mus musculus (taxid:10090)]

 Score = 218 (81.8 bits), Expect = 5.8e-18, P = 5.8e-18
 Identities = 61/237 (25%), Positives = 105/237 (44%)

Query:    94 KRFYEKVSTREADDGNGWTVMLDYRTLKTPSKRPLKLPTLGLAKAIGAEWDYQQTDGIRP 153
             KRFY+ VS  + +   G+ + LD+R LKTP  +   +P+  LA A+  EWD QQ D I+ 
Sbjct:    47 KRFYQNVSISQGE--GGFEINLDHRKLKTPQAKLFTVPSEALAIAVATEWDSQQ-DTIKF 103

Query:   154 FMMPLMKLACTALERVPLTRPK--IIEHLMKKFNQDLVFCRAPADNDLTSGVHERQVQKI 211
             + M L  L  T+L+  P  R K  +I   +K  + D +  R      L     E Q  + 
Sbjct:   104 YTMHLTTLCNTSLDN-PTQRSKDQLIRAAVKFLDTDTICYRVEEPETLV----ELQKNEW 158

Query:   212 DPLLKWVESEFGFKPVVYSSFFGGKQEDGLIKTVENLMKKTDDYELXXXXXXXXXXXXXX 271
             DP+++W E  +G +    +S  G        + + + +   + + L              
Sbjct:   159 DPVIEWAEKRYGMEIGSSTSIMGPSIPTQTREVLTSHLSSYNMWALQGIEFVVAQLKSML 218

Query:   272 XXXGIFRGKXXXXXXXXXXXXXXDLQVDKWGLVEGGHDIDIADLRVQISSATVFLGL 328
                G+   +              + Q+ KWG +E  HD ++ +LR + ++ T+F+ L
Sbjct:   219 LTLGLIDLRLTVEQAVLLSRLEEEYQIQKWGNIEWAHDYELQELRARTAAGTLFVHL 275

GO:0003674 "molecular_function" evidence=ND

GO:0005739 "mitochondrion" evidence=IDA

GO:0008150 "biological_process" evidence=ND

GO:0043461 "proton-transporting ATP synthase complex assembly" evidence=IEA

RGD|1305161 Atpaf2 "ATP synthase mitochondrial F1 complex assembly factor 2" [Rattus norvegicus (taxid:10116)]

 Score = 217 (81.4 bits), Expect = 7.5e-18, P = 7.5e-18
 Identities = 61/237 (25%), Positives = 105/237 (44%)

Query:    94 KRFYEKVSTREADDGNGWTVMLDYRTLKTPSKRPLKLPTLGLAKAIGAEWDYQQTDGIRP 153
             KRFY+ VS  + +   G+ + LD+R LKTP  +   +P+  LA A+  EWD QQ D I+ 
Sbjct:    56 KRFYQNVSISQGE--GGFEINLDHRKLKTPQAKLFTVPSEALAIAVATEWDSQQ-DTIKF 112

Query:   154 FMMPLMKLACTALERVPLTRPK--IIEHLMKKFNQDLVFCRAPADNDLTSGVHERQVQKI 211
             + M L  L  T+L+  P  R K  +I   +K  + D +  R      L     E Q  + 
Sbjct:   113 YTMHLTTLCNTSLDN-PTQRNKDQLIRAAVKFLDTDTICYRVEEPETLV----ELQKNEW 167

Query:   212 DPLLKWVESEFGFKPVVYSSFFGGKQEDGLIKTVENLMKKTDDYELXXXXXXXXXXXXXX 271
             DP+++W E  +G +    +S  G        + + + +   + + L              
Sbjct:   168 DPIIEWAEKRYGMEIGSSTSIMGPSIPTQTREVLTSHLASYNMWALQGIEFVVAQLKSML 227

Query:   272 XXXGIFRGKXXXXXXXXXXXXXXDLQVDKWGLVEGGHDIDIADLRVQISSATVFLGL 328
                G+   +              + Q+ KWG +E  HD ++ +LR + ++ T+F+ L
Sbjct:   228 LTLGLIDLRLTVEQAVLLSRLEEEYQIQKWGNIEWAHDYELQELRARTAAGTLFVHL 284

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0005739 "mitochondrion" evidence=IEA;ISO

GO:0008150 "biological_process" evidence=ND

GO:0016607 "nuclear speck" evidence=IEA;ISO

GO:0043461 "proton-transporting ATP synthase complex assembly" evidence=IEA

UNIPROTKB|Q0C3G5 HNE_1005 "ATP12 chaperone family protein" [Hyphomonas neptunium ATCC 15444 (taxid:228405)]

 Score = 202 (76.2 bits), Expect = 2.9e-16, P = 2.9e-16
 Identities = 55/209 (26%), Positives = 85/209 (40%)

Query:    94 KRFYEKVSTREADDGNGWTVMLDYRTLKTPSKRPLKLPTLGLAKAIGAEWDYQQTDGIRP 153
             KRFY  V T E  +G GW ++LD R++KTP +  L+LPT  LA+ +  EW  QQT  I  
Sbjct:    12 KRFYTDV-TAEPAEGGGWQILLDGRSVKTPGRALLRLPTEALAQEVAEEWAEQQTY-IHL 69

Query:   154 FMMPLMKLACTALERVPLTRPKIIEHLMKKFNQDLVFCRAPADNDLTSGVHERQVQKIDP 213
               M L +LA  A++R P  R ++ E + +    DL+ C    +    + + E + +   P
Sbjct:    70 IGMHLTRLANVAIDRTPEIREEMAEEVARYCETDLL-CHIAEEPFELAALEEARWR---P 125

Query:   214 LLKWVESEFGFKPVVYSSFFGGKQEDGLIKTVENLMKKTDDYELXXXXXXXXXXXXXXXX 273
             +L W   + G   +         Q    ++   +     DD+ L                
Sbjct:   126 VLDWAGEKLGVILMTTEGIIAAPQPGASLQAARDYALGLDDFRLTALVFACGVFGSAVLA 185

Query:   274 XGIFRGKXXXXXXXXXXXXXXDLQVDKWG 302
               +  G               D Q  KWG
Sbjct:   186 MALVEGALTAESAFHLSRVDEDWQAQKWG 214

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

UNIPROTKB|Q5LW25 SPO0518 "Uncharacterized protein" [Ruegeria pomeroyi DSS-3 (taxid:246200)]

 Score = 199 (75.1 bits), Expect = 6.0e-16, P = 6.0e-16
 Identities = 48/136 (35%), Positives = 76/136 (55%)

Query:    94 KRFYEKVSTREADDGNGWTVMLDYRTLKTPSKRPLKLPTLGLAKAIGAEWDYQQTDGIRP 153
             KRF+++ +   A+   G+ V LD R ++TP+K PL LPT  LA+AI AEWD Q+++ + P
Sbjct:    10 KRFWKQAAV--AETAEGYAVELDGRPVRTPAKAPLLLPTRALAEAIAAEWDAQESE-VDP 66

Query:   154 FMMPLMKLACTALERVPLTRPKIIEHLMKKFNQDLVFCRAPADNDLTSGVHERQVQKIDP 213
               MP  + A  A+++V + + ++ + L    + DL+  RA +  +L     E Q Q  DP
Sbjct:    67 INMPFTRTANAAIDKVRIQQAEVADMLAAYGDSDLLCYRADSPAELV----ELQAQTWDP 122

Query:   214 LLKWVESEFG--FKPV 227
              L W     G   +PV
Sbjct:   123 ALDWAAETLGVRLRPV 138

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

TIGR_CMR|SPO_0518 SPO_0518 "conserved hypothetical protein" [Ruegeria pomeroyi DSS-3 (taxid:246200)]

 Score = 199 (75.1 bits), Expect = 6.0e-16, P = 6.0e-16
 Identities = 48/136 (35%), Positives = 76/136 (55%)

Query:    94 KRFYEKVSTREADDGNGWTVMLDYRTLKTPSKRPLKLPTLGLAKAIGAEWDYQQTDGIRP 153
             KRF+++ +   A+   G+ V LD R ++TP+K PL LPT  LA+AI AEWD Q+++ + P
Sbjct:    10 KRFWKQAAV--AETAEGYAVELDGRPVRTPAKAPLLLPTRALAEAIAAEWDAQESE-VDP 66

Query:   154 FMMPLMKLACTALERVPLTRPKIIEHLMKKFNQDLVFCRAPADNDLTSGVHERQVQKIDP 213
               MP  + A  A+++V + + ++ + L    + DL+  RA +  +L     E Q Q  DP
Sbjct:    67 INMPFTRTANAAIDKVRIQQAEVADMLAAYGDSDLLCYRADSPAELV----ELQAQTWDP 122

Query:   214 LLKWVESEFG--FKPV 227
              L W     G   +PV
Sbjct:   123 ALDWAAETLGVRLRPV 138

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

UNIPROTKB|J9P3Y1 ATPAF2 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 162 (62.1 bits), Expect = 1.0e-15, Sum P(2) = 1.0e-15
 Identities = 44/131 (33%), Positives = 67/131 (51%)

Query:    94 KRFYEKVSTREADDGNGWTVMLDYRTLKTPSKRPLKLPTLGLAKAIGAEWDYQQTDGIRP 153
             KRFY+ VS  + +   G+ + LD+R LKTP  +   +P+  LA A+  EWD QQ D I+ 
Sbjct:     2 KRFYQNVSITQGE--GGFEINLDHRKLKTPQAKLFTVPSEALAIAVATEWDSQQ-DTIKF 58

Query:   154 FMMPLMKLACTALERVPLTRPK--IIEHLMKKFNQDLVFCRAPADNDLTSGVHERQVQKI 211
             + M L  L  T+L+  P  R K  +I   +K  + D +  R      L     E Q  + 
Sbjct:    59 YTMHLTTLCNTSLDN-PTQRNKDQLIRAAVKFLDTDTICYRVEEPATLV----ELQKNEW 113

Query:   212 DPLLKWVESEF 222
             DP+++W E  +
Sbjct:   114 DPIIEWAEKRY 124

GO:0043461 "proton-transporting ATP synthase complex assembly" evidence=IEA

UNIPROTKB|Q1LZ96 ATPAF2 "ATP synthase mitochondrial F1 complex assembly factor 2" [Bos taurus (taxid:9913)]

 Score = 167 (63.8 bits), Expect = 2.0e-15, Sum P(2) = 2.0e-15
 Identities = 45/132 (34%), Positives = 67/132 (50%)

Query:    94 KRFYEKVSTREADDGNGWTVMLDYRTLKTPSKRPLKLPTLGLAKAIGAEWDYQQTDGIRP 153
             KRFY+ VS  + +   G+ + LD+R L+TP  +   +P+  LA A+  EWD QQ D I+ 
Sbjct:    47 KRFYQNVSISQGE--GGFEINLDHRKLRTPQGKLFTVPSEALAIAVATEWDSQQ-DTIKM 103

Query:   154 FMMPLMKLACTALERVPLTRPK--IIEHLMKKFNQDLVFCRAPADNDLTSGVHERQVQKI 211
             + M L  L  T+L+  P  R K  +I   +K  + D V  R      L     E Q  + 
Sbjct:   104 YTMHLTTLCNTSLDN-PTQRDKDQLIRAAVKFLDTDTVCYRVEEPETLV----ELQRNEW 158

Query:   212 DPLLKWVESEFG 223
             DP++ W E  +G
Sbjct:   159 DPVISWAEKRYG 170

GO:0005739 "mitochondrion" evidence=IEA

GO:0016607 "nuclear speck" evidence=IEA

GO:0043461 "proton-transporting ATP synthase complex assembly" evidence=IEA

UNIPROTKB|F1PRK7 ATPAF2 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 162 (62.1 bits), Expect = 7.3e-15, Sum P(2) = 7.3e-15
 Identities = 44/131 (33%), Positives = 67/131 (51%)

Query:    94 KRFYEKVSTREADDGNGWTVMLDYRTLKTPSKRPLKLPTLGLAKAIGAEWDYQQTDGIRP 153
             KRFY+ VS  + +   G+ + LD+R LKTP  +   +P+  LA A+  EWD QQ D I+ 
Sbjct:    43 KRFYQNVSITQGE--GGFEINLDHRKLKTPQAKLFTVPSEALAIAVATEWDSQQ-DTIKF 99

Query:   154 FMMPLMKLACTALERVPLTRPK--IIEHLMKKFNQDLVFCRAPADNDLTSGVHERQVQKI 211
             + M L  L  T+L+  P  R K  +I   +K  + D +  R      L     E Q  + 
Sbjct:   100 YTMHLTTLCNTSLDN-PTQRNKDQLIRAAVKFLDTDTICYRVEEPATLV----ELQKNEW 154

Query:   212 DPLLKWVESEF 222
             DP+++W E  +
Sbjct:   155 DPIIEWAEKRY 165

GO:0043461 "proton-transporting ATP synthase complex assembly" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input:
	GSVIVG00020592001	SubName- Full=Chromosome chr14 scaffold_21, whole genome shotgun sequence; (328 aa)
		(Vitis vinifera)
Predicted Functional Partners:
	GSVIVG00014042001	SubName- Full=Chromosome chr16 scaffold_10, whole genome shotgun sequence; (158 aa)			•				•		0.401

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	332
pfam07542	122	pfam07542, ATP12, ATP12 chaperone protein	2e-48
COG5387	264	COG5387, COG5387, Chaperone required for the assem	2e-36

>gnl|CDD|203677 pfam07542, ATP12, ATP12 chaperone protein

 Score =  158 bits (401), Expect = 2e-48
 Identities = 56/129 (43%), Positives = 77/129 (59%), Gaps = 7/129 (5%)

Query: 94  KRFYEKVSTREADDGNGWTVMLDYRTLKTPSKRPLKLPTLGLAKAIGAEWDYQQTDGIRP 153
           KRFY++VS  E + G  + V+LD R +KTP+K PL +P+  LA+AI AEWD Q  + I P
Sbjct: 1   KRFYKEVSVEEEEGG--FAVLLDGRPVKTPAKNPLAVPSEALAEAIAAEWDAQG-EVIDP 57

Query: 154 FMMPLMKLACTALERVPLTRPKIIEHLMKKFNQDLVFCRAPADNDLTSGVHERQVQKIDP 213
             MPL +LA TA++ V   R  +IE L++  + DL+  RAP   +L      RQ +  DP
Sbjct: 58  ATMPLTRLANTAIDLVAEDRDAVIEDLLRYLDTDLLCYRAPEPEEL----VARQAELWDP 113

Query: 214 LLKWVESEF 222
           LL W E   
Sbjct: 114 LLDWAEERL 122

Mitochondrial F1-ATPase is an oligomeric enzyme composed of five distinct subunit polypeptides. The alpha and beta subunits make up the bulk of protein mass of F1. In Saccharomyces cerevisiae both subunits are synthesised as precursors with amino-terminal targeting signals that are removed upon translocation of the proteins to the matrix compartment. These proteins include examples from eukaryotes and bacteria and may have chaperone activity, being involved in F1 ATPase complex assembly. Length = 122

>gnl|CDD|227677 COG5387, COG5387, Chaperone required for the assembly of the mitochondrial F1-ATPase [Posttranslational modification, protein turnover, chaperones]

 Score =  131 bits (332), Expect = 2e-36
 Identities = 68/231 (29%), Positives = 118/231 (51%), Gaps = 8/231 (3%)

Query: 94  KRFYEKVSTREADDGNGWTVMLDYRTLKTPSKRPLKLPTLGLAKAIGAEWDYQQTDGIRP 153
           KRFY+K +  + + G G+ + LD RTLKTP+ +PL +PT  LA  +  EWD Q    I P
Sbjct: 33  KRFYKKATAADVEKG-GFAIQLDGRTLKTPAGKPLVVPTEALAYLLALEWDAQSES-IDP 90

Query: 154 FMMPLMKLACTALERVPLTRPKIIEHLMKKFNQDLVFCRAPADNDLTSGVHERQVQKIDP 213
             MPL +L  TA++ +      + E +++  + DL+  RA +  +L     ERQ +  DP
Sbjct: 91  HSMPLTRLVNTAIDGIAEDSQAVFEQILRFLDTDLLCYRAESPFELV----ERQNENWDP 146

Query: 214 LLKWVESEFGFKPVVYSSFFGGKQEDGLIKTVENLMKKTDD-YELAAIDAIAAAAHSLVI 272
           ++ W E+  G + ++      G+Q    +      +   D  + LAA++ + +   S ++
Sbjct: 147 IIDWAENFLGARFILVDGVIHGEQPREAVAAFAVKLMSLDSPWALAALETMVSLTGSFIL 206

Query: 273 AIGIFRGKLQIEEAIELIRLEEDLQVDKWG-LVEGGHDIDIADLRVQISSA 322
           A+ +  G+L  E+A  L  L+ED Q ++WG   E         + + I++ 
Sbjct: 207 ALALLEGELSAEKAWALAHLDEDWQAEQWGSDEEATERRKNRLIEMAIAAR 257

Length = 264

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	332
KOG3015	283	consensus F1-ATP synthase assembly protein [Energy	100.0
COG5387	264	Chaperone required for the assembly of the mitocho	100.0
PF07542	122	ATP12: ATP12 chaperone protein; InterPro: IPR01141	100.0

>KOG3015 consensus F1-ATP synthase assembly protein [Energy production and conversion]

Probab=100.00  E-value=2e-75  Score=545.79  Aligned_cols=261  Identities=37%  Similarity=0.614  Sum_probs=242.0

Q ss_pred             ceeecCCCCCCCCCCCCccccccccCCCCCCcCcccceeeeeEeCCCCCEEEEeCCCcCCCCCCCceeeCcHHHHHHHHH
Q 020035           62 SIYIKGRKQETASSSSSSVTMPMSFMTGSIVGKRFYEKVSTREADDGNGWTVMLDYRTLKTPSKRPLKLPTLGLAKAIGA  141 (332)
Q Consensus        62 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~KRFyK~V~V~~~~~~~g~~V~LDgR~LKTP~~~~L~vPs~~LA~aIA~  141 (332)
                      +++...|.|.... .+.++.+|        +.|||||+|++...++++||.|.||||++|||.|+++.|||+.||++||.
T Consensus        22 ~~fs~~~~p~~~~-~a~~~~~P--------t~krF~kkvs~~~g~~~g~~~v~LD~R~lKTP~g~~f~v~s~~LA~~ia~   92 (283)
T KOG3015|consen   22 PMFSLCPGPLSTA-IAREYASP--------TSKRFYKKVSTLTGDAFGGQEVQLDGRTLKTPKGNPFKVRSEKLAIAIAL   92 (283)
T ss_pred             cceecCCCccccc-cccccCCC--------cHHHHHhhhhheecccCCceEEecccccccCCCCCeeecccHHHHHHHHH
Confidence            3444444444333 44445444        27999999999998877899999999999999999999999999999999


Q ss_pred             HhccccCCCccCCCCchhHHHhHhhcCC-CCChHHHHHHHHhhcCCceEeEecCCCCCcchHHHHHHHhhhhHHHHHHHH
Q 020035          142 EWDYQQTDGIRPFMMPLMKLACTALERV-PLTRPKIIEHLMKKFNQDLVFCRAPADNDLTSGVHERQVQKIDPLLKWVES  220 (332)
Q Consensus       142 EW~~~Q~e~I~p~tMPLT~La~tAID~~-~~~r~~ii~~Ll~Yl~tDtvcyra~~p~~L~~~L~~~Q~e~WdPll~W~~~  220 (332)
                      ||++++.+.|+||+||||+||+||||++ +.+++.++++|++|++|||||||+++++.| +.|++.|.|.|+|||+||++
T Consensus        93 Ewdsq~s~~i~~~~mplt~L~~taid~~~~~~kd~i~~~llrfldtDTvlf~~pe~e~l-~~l~~~Q~e~w~Plie~~e~  171 (283)
T KOG3015|consen   93 EWDSQKSTSIRPFTMPLTSLVFTAIDNPSELNKDTISNQLLRFLDTDTVLFFSPESEDL-GRLRDLQVEEWDPLIEWFEN  171 (283)
T ss_pred             HHhhcccccccccccHHHHHHHHHhhccCcccHHHHHHHHHHHhccCeEEEecCChhhh-hHHHHHHHHhhHHHHHHHHH
Confidence            9997777999999999999999999995 799999999999999999999999999777 58889999999999999999


Q ss_pred             HhCCcccccCCccCCCCCHHHHHHHHHHHhCCCchhHHHHHHHHHHhhHHHHHHHHHcCCCCHHHHHHHhhhhHHHHhhh
Q 020035          221 EFGFKPVVYSSFFGGKQEDGLIKTVENLMKKTDDYELAAIDAIAAAAHSLVIAIGIFRGKLQIEEAIELIRLEEDLQVDK  300 (332)
Q Consensus       221 ~fgv~l~~t~gi~~~~Q~~~t~~~l~~~L~sld~w~Laal~~av~~~kSlilaLAl~~g~l~~e~A~~aarLEE~~Q~e~  300 (332)
                      +||+++.++++|++++|++.+++++++||.++|+|+|+||++++..+||||||+++++|++++|+|+.+|||||+||+++
T Consensus       172 ~lgvkl~~~~~I~~~~q~e~~ke~i~~~l~s~n~w~Lagle~~v~s~KSfVia~~ii~~~l~~d~Av~larLEe~yQvek  251 (283)
T KOG3015|consen  172 RLGVKLQPSDNILGGKQAEKDKEAIDKWLSSLNFWALAGLEFAVASLKSFVIALGIIEGKLDVDKAVALARLEEEYQVEK  251 (283)
T ss_pred             HhCcceeecccccCCcccHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hcCCCCcchhhHHHHHHHhhHHHHHHHhhhcC
Q 020035          301 WGLVEGGHDIDIADLRVQISSATVFLGLSRRN  332 (332)
Q Consensus       301 WG~VE~~HDvd~adl~~~L~AA~lf~~l~r~~  332 (332)
                      ||+|||+||++++++++++++|.+|++|+++|
T Consensus       252 WG~VEwaHdi~~~eL~~r~~aa~lf~~l~~~~  283 (283)
T KOG3015|consen  252 WGNVEWAHDIEKQELRARLSAATLFVHLNSEN  283 (283)
T ss_pred             HhcccccchhhHHHHHHHHHHHHHHHHHhcCC
Confidence            99999999999999999999999999999875

>COG5387 Chaperone required for the assembly of the mitochondrial F1-ATPase [Posttranslational modification, protein turnover, chaperones]

Probab=100.00  E-value=7.4e-65  Score=467.51  Aligned_cols=229  Identities=29%  Similarity=0.545  Sum_probs=217.9

Q ss_pred             CCCcCcccceeeeeEeCCCCCEEEEeCCCcCCCCCCCceeeCcHHHHHHHHHHhccccCCCccCCCCchhHHHhHhhcCC
Q 020035           90 SIVGKRFYEKVSTREADDGNGWTVMLDYRTLKTPSKRPLKLPTLGLAKAIGAEWDYQQTDGIRPFMMPLMKLACTALERV  169 (332)
Q Consensus        90 ~~~~KRFyK~V~V~~~~~~~g~~V~LDgR~LKTP~~~~L~vPs~~LA~aIA~EW~~~Q~e~I~p~tMPLT~La~tAID~~  169 (332)
                      .+.+|||||++++.+.++ |||.|+||||++|||.|++|+||++.||+.||.||+ .|.+.|+||.||+|+|++||||++
T Consensus        29 ~plpkrfyk~a~aa~ve~-Gg~aiqLDGR~~KtPa~k~l~vpt~~LA~lla~EWd-aqs~~I~~~~mP~TrlV~taID~i  106 (264)
T COG5387          29 KPLPKRFYKKATAADVEK-GGFAIQLDGRTLKTPAGKPLVVPTEALAYLLALEWD-AQSESIDPHSMPLTRLVNTAIDGI  106 (264)
T ss_pred             CcchHHHHHHhhcCcccc-CceEEEeCCCCCCCCCCCceeCcHHHHHHHHHHHhh-cchhccCcccCcHHHHHHHHHHhh
Confidence            355899999999999876 479999999999999999999999999999999999 999999999999999999999999


Q ss_pred             CCChHHHHHHHHhhcCCceEeEecCCCCCcchHHHHHHHhhhhHHHHHHHHHhCCcccccCCccCCCCCHHHHHHHHHHH
Q 020035          170 PLTRPKIIEHLMKKFNQDLVFCRAPADNDLTSGVHERQVQKIDPLLKWVESEFGFKPVVYSSFFGGKQEDGLIKTVENLM  249 (332)
Q Consensus       170 ~~~r~~ii~~Ll~Yl~tDtvcyra~~p~~L~~~L~~~Q~e~WdPll~W~~~~fgv~l~~t~gi~~~~Q~~~t~~~l~~~L  249 (332)
                      ..+++.+.++|++|++||++|||++.|.+    |+++|++.|+||++|+++.+|+.+...+|+++.+||.+++++++.++
T Consensus       107 a~~~~~v~~~ilrf~~tDlLcYra~sp~e----Lv~rQ~e~w~Piidw~e~~lg~rf~~vdgvih~~Qp~E~va~~a~~l  182 (264)
T COG5387         107 AEDSQAVFEQILRFLDTDLLCYRAESPFE----LVERQNENWDPIIDWAENFLGARFILVDGVIHGEQPREAVAAFAVKL  182 (264)
T ss_pred             cccHHHHHHHHHHHccCCeeEecCCCHHH----HHHHHHhhhHHHHHHHHHhhCceEEeehhhhcCCCcHHHHHHHHHHH
Confidence            99999999999999999999999999855    69999999999999999999999999999999999999999999999


Q ss_pred             hCCC-chhHHHHHHHHHHhhHHHHHHHHHcCCCCHHHHHHHhhhhHHHHhhhhc-CCCCcchhhHHHHHHHhhHHHH
Q 020035          250 KKTD-DYELAAIDAIAAAAHSLVIAIGIFRGKLQIEEAIELIRLEEDLQVDKWG-LVEGGHDIDIADLRVQISSATV  324 (332)
Q Consensus       250 ~sld-~w~Laal~~av~~~kSlilaLAl~~g~l~~e~A~~aarLEE~~Q~e~WG-~VE~~HDvd~adl~~~L~AA~l  324 (332)
                      .+++ ||.|++|+.+|..+||+|||+++..|+++.|+||.+++|||+||+|+|| .+|+.||.+..++++.+.+..+
T Consensus       183 ~s~~sp~~LA~l~~~~sl~gS~Il~lal~~g~l~~e~a~ala~lde~~q~EqWG~d~Ea~~r~~~r~i~~~i~~r~i  259 (264)
T COG5387         183 MSLDSPWALAALETMVSLTGSFILALALLEGELSAEKAWALAHLDEDWQAEQWGSDEEATERRKNRLIEMAIAARVI  259 (264)
T ss_pred             hhcCCHHHHHHHHHHHHHHHHHHHHHHHHcCcccHHHHHHHHhHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHH
Confidence            9986 5999999999999999999999999999999999999999999999999 7888899998888888776653

>PF07542 ATP12: ATP12 chaperone protein; InterPro: IPR011419 This entry represents a group of ATPase F1F0-assembly proteins, including ATP12 and ATPAF2 (ATP synthase mitochondrial F1 complex assembly factor 2)

Probab=100.00  E-value=1.2e-49  Score=338.10  Aligned_cols=122  Identities=46%  Similarity=0.794  Sum_probs=102.7

Q ss_pred             CcccceeeeeEeCCCCCEEEEeCCCcCCCCCCCceeeCcHHHHHHHHHHhccccCCCccCCCCchhHHHhHhhcCCCCCh
Q 020035           94 KRFYEKVSTREADDGNGWTVMLDYRTLKTPSKRPLKLPTLGLAKAIGAEWDYQQTDGIRPFMMPLMKLACTALERVPLTR  173 (332)
Q Consensus        94 KRFyK~V~V~~~~~~~g~~V~LDgR~LKTP~~~~L~vPs~~LA~aIA~EW~~~Q~e~I~p~tMPLT~La~tAID~~~~~r  173 (332)
                      |||||+|+|.+.++  ||+|+||||+||||+|++|+|||++||++||+||+ +|++.|+|++||||+||+||||+++.+|
T Consensus         1 KRFyk~v~v~~~~~--g~~V~LDgR~lkTP~~~~l~vps~~LA~avA~EW~-~Q~~~i~p~~MPLT~L~~taiD~~~~~r   77 (122)
T PF07542_consen    1 KRFYKEVSVEENDG--GFQVLLDGRPLKTPAGNPLVVPSEALAEAVAAEWD-AQGEYIKPHTMPLTSLANTAIDRVAEDR   77 (122)
T ss_dssp             B---S-EEEEEETT--SEEEEETTEE-BETTSEB--BSSHHHHHHHHHHHH-T-SSB--GGG-HHHHHHHHHHHTTCCCH
T ss_pred             CCCcceeeEEecCC--CEEEEeCCCCCCCCCCCeeEcCcHHHHHHHHHHHH-hhhcccCcccccHHHHHHHHHhccchhH
Confidence            89999999998654  79999999999999999999999999999999999 9999999999999999999999998899


Q ss_pred             HHHHHHHHhhcCCceEeEecCCCCCcchHHHHHHHhhhhHHHHHHHHHh
Q 020035          174 PKIIEHLMKKFNQDLVFCRAPADNDLTSGVHERQVQKIDPLLKWVESEF  222 (332)
Q Consensus       174 ~~ii~~Ll~Yl~tDtvcyra~~p~~L~~~L~~~Q~e~WdPll~W~~~~f  222 (332)
                      +.++++|++|++|||||||+++|+    .|+++|.+.|+||++||+++|
T Consensus        78 ~~~~~~il~yl~tDtlc~r~~~~~----~L~~~Q~~~w~Pll~w~~~~f  122 (122)
T PF07542_consen   78 EAVIDEILRYLDTDTLCYRAPEPE----ELVERQEEKWDPLLEWAEERF  122 (122)
T ss_dssp             HHHHHHHHHHHHC-CCCEE--SSH----HHHHHHHHHHHHHHHHHHHH-
T ss_pred             HHHHHHHHHHcCCCeEEEeCCCcH----HHHHHHHHHHHHHHHHHHhcC
Confidence            999999999999999999999984    479999999999999999987

These proteins are essential for the assembly of the mitochondrial F1-F0 complex. Mitochondrial F1-ATPase is an oligomeric enzyme composed of five distinct subunit polypeptides. The alpha and beta subunits make up the bulk of protein mass of F1. In Saccharomyces cerevisiae both subunits are synthesised as precursors with N-terminal targeting signals that are removed upon translocation of the proteins to the matrix compartment []. These proteins include examples from eukaryotes and bacteria and may have chaperone activity, being involved in F1 ATPase complex assembly. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0043461 proton-transporting ATP synthase complex assembly; PDB: 2R6I_B 2ZD2_B 2P4X_B 2R31_A.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	332
2zd2_A	234	D202k Mutant Of P. Denitrificans Atp12p Length = 23		5e-14
2p4x_A	239	Crystal Structure Of Atp12 From Paracoccus Denitrif		5e-14
2r6i_A	284	Crystal Structure Of Atu1473 Protein, A Putative Ch		6e-10

>pdb|2ZD2|A Chain A, D202k Mutant Of P. Denitrificans Atp12p Length = 234

Iteration: 1
 Score = 75.1 bits (183), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 55/210 (26%), Positives = 85/210 (40%), Gaps = 7/210 (3%)
Query: 93  GKRFYEKVSTREADDGNGWTVMLDYRTLKTPSKRPLKLPTLGLAKAIGAEWDYQQTDGIR 152
            +RF+  V   + +   GW V+LD R L+TP K+PL+LPT  LA AI  EW   Q + I 
Sbjct: 5   ARRFWASVGIHKEE--GGWAVLLDERPLRTPGKQPLRLPTEALALAIAEEWQAVQ-EVID 61
Query: 153 PFMMPLMKLACTALERVPLTRPKIIEHLMKKFNQDLVFCRAPADNDLTSGVHERQVQKID 212
           P  MPL + A +A+E+V      +   L      DL+  RA A   L       Q +  D
Sbjct: 62  PNAMPLTRSANSAIEKVAPQFDAVAAMLGDYGGTDLLSYRADAPEALVRA----QAEGWD 117
Query: 213 PLLKWVESEFGFKPVVYSSFFGGKQEDGLIKTVENLMKKTDDYELXXXXXXXXXXXXXXX 272
           PL+ W  +E      +        Q+  ++  +   +   D + L               
Sbjct: 118 PLIDWAATELRAPLRITHGVIPVPQDPVVLLKLRAEVASLDPFGLTALHDLVTLPGSLIL 177
Query: 273 XXGIFRGKXXXXXXXXXXXXXXDLQVDKWG 302
              + RG+              + Q ++WG
Sbjct: 178 GLAVIRGRIDAPTAHALSRIKEEFQAERWG 207

>pdb|2P4X|A Chain A, Crystal Structure Of Atp12 From Paracoccus Denitrificans Length = 239

Iteration: 1
 Score = 75.1 bits (183), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 55/210 (26%), Positives = 85/210 (40%), Gaps = 7/210 (3%)
Query: 93  GKRFYEKVSTREADDGNGWTVMLDYRTLKTPSKRPLKLPTLGLAKAIGAEWDYQQTDGIR 152
            +RF+  V   + +   GW V+LD R L+TP K+PL+LPT  LA AI  EW   Q + I 
Sbjct: 9   ARRFWASVGIHKEE--GGWAVLLDERPLRTPGKQPLRLPTEALALAIAEEWQAVQ-EVID 65
Query: 153 PFMMPLMKLACTALERVPLTRPKIIEHLMKKFNQDLVFCRAPADNDLTSGVHERQVQKID 212
           P  MPL + A +A+E+V      +   L      DL+  RA A   L       Q +  D
Sbjct: 66  PNAMPLTRSANSAIEKVAPQFDAVAAMLGDYGGTDLLSYRADAPEALVRA----QAEGWD 121
Query: 213 PLLKWVESEFGFKPVVYSSFFGGKQEDGLIKTVENLMKKTDDYELXXXXXXXXXXXXXXX 272
           PL+ W  +E      +        Q+  ++  +   +   D + L               
Sbjct: 122 PLIDWAATELRAPLRITHGVIPVPQDPVVLLKLRAEVASLDPFGLTALHDLVTLPGSLIL 181
Query: 273 XXGIFRGKXXXXXXXXXXXXXXDLQVDKWG 302
              + RG+              + Q ++WG
Sbjct: 182 GLAVIRGRIDAPTAHALSRIDEEFQAERWG 211

>pdb|2R6I|A Chain A, Crystal Structure Of Atu1473 Protein, A Putative Chaperone From Agrobacterium Tumefaciens Length = 284

Iteration: 1
 Score = 61.6 bits (148), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 45/160 (28%), Positives = 81/160 (50%), Gaps = 6/160 (3%)
Query: 94  KRFYEKVSTREADDGNGWTVMLDYRTLKTPSKRPLKLPTLGLAKAIGAEWDYQQTDGIRP 153
           KRFY+ V+  + ++G G+T++LD + L+TP+K+PL  P+  LA  +  EWD Q+ + + P
Sbjct: 52  KRFYKDVTVADVEEG-GFTILLDGKPLRTPAKKPLVAPSRALADLLRDEWDAQK-EVVNP 109
Query: 154 FMMPLMKLACTALERVPLTRPKIIEHLMKKFNQDLVFCRAPADNDLTSGVHERQVQKIDP 213
            + P+ +   TA++ +      + E +++  + DL+  RA     L +    RQ    DP
Sbjct: 110 VVXPVSRHVNTAIDGIASDTQAVFEDILRFSSSDLLCYRAGDPEALVA----RQTDYWDP 165
Query: 214 LLKWVESEFGFKPVVYSSFFGGKQEDGLIKTVENLMKKTD 253
           +L W  +  G + ++        Q    I      +KK D
Sbjct: 166 VLDWATNVLGARFILVEGVXHRDQPREAIAAFAVTLKKYD 205

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	332
2r31_A	239	ATP12 ATPase; chaperone F1 ATPase assembly ATP12P,	2e-71
2r6i_A	284	AGR_C_2717P, uncharacterized protein ATU1473; chap	5e-63

>2r31_A ATP12 ATPase; chaperone F1 ATPase assembly ATP12P, chaperone; 1.00A {Paracoccus denitrificans} SCOP: d.381.1.1 PDB: 2p4x_A 2zd2_A Length = 239

 Score =  220 bits (562), Expect = 2e-71
 Identities = 66/241 (27%), Positives = 107/241 (44%), Gaps = 8/241 (3%)

Query: 90  SIVGKRFYEKVSTREADDGNGWTVMLDYRTLKTPSKRPLKLPTLGLAKAIGAEWDYQQTD 149
               +RF+  V   + + G  W V+LD R L+TP K+PL+LPT  LA AI  EW     +
Sbjct: 6   EWKARRFWASVGIHKEEGG--WAVLLDERPLRTPGKQPLRLPTEALALAIAEEWQ-AVQE 62

Query: 150 GIRPFMMPLMKLACTALERVPLTRPKIIEHLMKKFNQDLVFCRAPADNDLTSGVHERQVQ 209
            I P  MPL + A +A+E+V      +   L      DL+  RA A   L       Q +
Sbjct: 63  VIDPNAMPLTRSANSAIEKVAPQFDAVAAMLGDYGGTDLLSYRADAPEAL----VRAQAE 118

Query: 210 KIDPLLKWVESEFGFKPVVYSSFFGGKQEDGLIKTVENLMKKTDDYELAAIDAIAAAAHS 269
             DPL+ W  +E      +        Q+  ++  +   +   D + L A+  +     S
Sbjct: 119 GWDPLIDWAATELRAPLRITHGVIPVPQDPVVLLKLRAEVASLDPFGLTALHDLVTLPGS 178

Query: 270 LVIAIGIFRGKLQIEEAIELIRLEEDLQVDKWGLVEGGHDIDIADLRVQISSATVFLGLS 329
           L++ + + RG++    A  L R++E+ Q ++WG  E       A     +  +  F  L+
Sbjct: 179 LILGLAVIRGRIDAPTAHALSRIDEEFQAERWGRDEEAEAQA-ASRLAAMRDSERFWHLT 237

Query: 330 R 330
           R
Sbjct: 238 R 238

>2r6i_A AGR_C_2717P, uncharacterized protein ATU1473; chaperone, structural genomics, APC6123, PSI-2, protein STRU initiative; 2.59A {Agrobacterium tumefaciens str} SCOP: d.381.1.1 Length = 284

 Score =  201 bits (511), Expect = 5e-63
 Identities = 65/238 (27%), Positives = 116/238 (48%), Gaps = 8/238 (3%)

Query: 94  KRFYEKVSTREADDGNGWTVMLDYRTLKTPSKRPLKLPTLGLAKAIGAEWDYQQTDGIRP 153
           KRFY+ V+  + ++G G+T++LD + L+TP+K+PL  P+  LA  +  EWD  Q + + P
Sbjct: 52  KRFYKDVTVADVEEG-GFTILLDGKPLRTPAKKPLVAPSRALADLLRDEWD-AQKEVVNP 109

Query: 154 FMMPLMKLACTALERVPLTRPKIIEHLMKKFNQDLVFCRAPADNDLTSGVHERQVQKIDP 213
            +MP+ +   TA++ +      + E +++  + DL+  RA         +  RQ    DP
Sbjct: 110 VVMPVSRHVNTAIDGIASDTQAVFEDILRFSSSDLLCYRAGDPEA----LVARQTDYWDP 165

Query: 214 LLKWVESEFGFKPVVYSSFFGGKQEDGLIKTVENLMKKTDD-YELAAIDAIAAAAHSLVI 272
           +L W  +  G + ++        Q    I      +KK D    LAA+  + +   S ++
Sbjct: 166 VLDWATNVLGARFILVEGVMHRDQPREAIAAFAVTLKKYDTPIALAALHTMTSLTGSAIL 225

Query: 273 AIGIFRGKLQIEEAIELIRLEEDLQVDKWGLVEGGHDIDIADLRVQISSATVFLGLSR 330
           A+ +  G+L +EEA  L  L+ED   ++WG  E   +     L   + +A   L   +
Sbjct: 226 ALALAEGELTLEEAWALAHLDEDWTAEQWGEDEEALERRAVRLI-DMRAALNVLESLK 282

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	332
2r31_A	239	ATP12 ATPase; chaperone F1 ATPase assembly ATP12P,	100.0
2r6i_A	284	AGR_C_2717P, uncharacterized protein ATU1473; chap	100.0

>2r31_A ATP12 ATPase; chaperone F1 ATPase assembly ATP12P, chaperone; 1.00A {Paracoccus denitrificans} SCOP: d.381.1.1 PDB: 2p4x_A 2zd2_A

Probab=100.00  E-value=4.3e-82  Score=588.59  Aligned_cols=234  Identities=27%  Similarity=0.475  Sum_probs=227.1

Q ss_pred             CCCcCcccceeeeeEeCCCCCEEEEeCCCcCCCCCCCceeeCcHHHHHHHHHHhccccCCCccCCCCchhHHHhHhhcCC
Q 020035           90 SIVGKRFYEKVSTREADDGNGWTVMLDYRTLKTPSKRPLKLPTLGLAKAIGAEWDYQQTDGIRPFMMPLMKLACTALERV  169 (332)
Q Consensus        90 ~~~~KRFyK~V~V~~~~~~~g~~V~LDgR~LKTP~~~~L~vPs~~LA~aIA~EW~~~Q~e~I~p~tMPLT~La~tAID~~  169 (332)
                      ++.+|||||+|+|.+.+  +||+|+||||+||||+|++|+|||++||++||+||+ +|++.|+|++||||+|||||||++
T Consensus         6 ~~~~kRFyk~v~v~~~~--gg~~V~LDgR~lkTP~~~~L~vPs~~LA~aiA~EW~-~Q~~~I~p~~MPlT~La~tAiD~~   82 (239)
T 2r31_A            6 EWKARRFWASVGIHKEE--GGWAVLLDERPLRTPGKQPLRLPTEALALAIAEEWQ-AVQEVIDPNAMPLTRSANSAIEKV   82 (239)
T ss_dssp             HHHTBCCCSCEEEEEET--TEEEEEETTEECBCTTSCBCCBSCHHHHHHHHHHHH-TCCSBCCGGGCHHHHHHHHHHHTT
T ss_pred             ccccccceeeceEEecC--CceEEEeCCCCCCCCCCCeeecCcHHHHHHHHHHHH-HhhccCccCCCcHHHHHHHHHccC
Confidence            46789999999999875  489999999999999999999999999999999999 899999999999999999999999


Q ss_pred             CCChHHHHHHHHhhcCCceEeEecCCCCCcchHHHHHHHhhhhHHHHHHHHHhCCcccccCCccCCCCCHHHHHHHHHHH
Q 020035          170 PLTRPKIIEHLMKKFNQDLVFCRAPADNDLTSGVHERQVQKIDPLLKWVESEFGFKPVVYSSFFGGKQEDGLIKTVENLM  249 (332)
Q Consensus       170 ~~~r~~ii~~Ll~Yl~tDtvcyra~~p~~L~~~L~~~Q~e~WdPll~W~~~~fgv~l~~t~gi~~~~Q~~~t~~~l~~~L  249 (332)
                      +.+|+.++++|++|++|||||||+++|    +.|+++|.+.|+|||+||+++||+++.+++||++++||+++++++++||
T Consensus        83 ~~~r~~v~~~ll~y~~tD~l~yra~~p----~~L~~~Q~~~wdPll~w~~~~~g~~l~~~~gi~~~~Q~~~~~~~~~~~l  158 (239)
T 2r31_A           83 APQFDAVAAMLGDYGGTDLLSYRADAP----EALVRAQAEGWDPLIDWAATELRAPLRITHGVIPVPQDPVVLLKLRAEV  158 (239)
T ss_dssp             GGGHHHHHHHHHHGGGSCGGGEECCCC----HHHHHHHHHHHHHHHHHHHHHSSCCCCCEETTCCCCCCHHHHHHHHHHH
T ss_pred             cccHHHHHHHHHHhcCCCeEEEecCCc----HHHHHHHHHHhHHHHHHHHHHcCCceeeecCccCCCCCHHHHHHHHHHH
Confidence            999999999999999999999999987    4679999999999999999999999999999999999999999999999


Q ss_pred             hCCCchhHHHHHHHHHHhhHHHHHHHHHcCCCCHHHHHHHhhhhHHHHhhhhcCCCCcchhhHHHHHHHhhHHHHHHHhh
Q 020035          250 KKTDDYELAAIDAIAAAAHSLVIAIGIFRGKLQIEEAIELIRLEEDLQVDKWGLVEGGHDIDIADLRVQISSATVFLGLS  329 (332)
Q Consensus       250 ~sld~w~Laal~~av~~~kSlilaLAl~~g~l~~e~A~~aarLEE~~Q~e~WG~VE~~HDvd~adl~~~L~AA~lf~~l~  329 (332)
                      .+||+|+|+||+.+|.++||+|||+|+++|++++|+|+++|||||+||+++||+|||+||+++++ +++++||++|++++
T Consensus       159 ~~l~~~~Laal~~~~~~~kS~ilalal~~g~~~~e~a~~~a~lEe~~Q~e~WG~ve~ahd~~~~~-~~~l~aa~l~~~l~  237 (239)
T 2r31_A          159 ASLDPFGLTALHDLVTLPGSLILGLAVIRGRIDAPTAHALSRIDEEFQAERWGRDEEAEAQAASR-LAAMRDSERFWHLT  237 (239)
T ss_dssp             HTSCHHHHHHHHHHHHTTTCHHHHHHHHTTSSCHHHHHHHHTHHHHHHHHHHCCCHHHHHHHHHH-HHHHHHHHHHHHHT
T ss_pred             HcCCHHHHHHHHHHHHHHhHHHHHHHHHcCCCCHHHHHHHhhhhHHHHHHHHCCCchHhHHHHHH-HHHHHHHHHHHHHh
Confidence            99999999999999999999999999999999999999999999999999999999999999999 99999999999998


Q ss_pred             hc
Q 020035          330 RR  331 (332)
Q Consensus       330 r~  331 (332)
                      |.
T Consensus       238 ~~  239 (239)
T 2r31_A          238 RG  239 (239)
T ss_dssp             C-
T ss_pred             cC
Confidence            74

>2r6i_A AGR_C_2717P, uncharacterized protein ATU1473; chaperone, structural genomics, APC6123, PSI-2, protein STRU initiative; 2.59A {Agrobacterium tumefaciens str} SCOP: d.381.1.1

Probab=100.00  E-value=1.4e-78  Score=576.29  Aligned_cols=234  Identities=27%  Similarity=0.483  Sum_probs=221.7

Q ss_pred             CCcCcccceeeeeEeCCCCCEEEEeCCCcCCCCCCCceeeCcHHHHHHHHHHhccccCCCccCCCCchhHHHhHhhcCCC
Q 020035           91 IVGKRFYEKVSTREADDGNGWTVMLDYRTLKTPSKRPLKLPTLGLAKAIGAEWDYQQTDGIRPFMMPLMKLACTALERVP  170 (332)
Q Consensus        91 ~~~KRFyK~V~V~~~~~~~g~~V~LDgR~LKTP~~~~L~vPs~~LA~aIA~EW~~~Q~e~I~p~tMPLT~La~tAID~~~  170 (332)
                      +.+|||||+|+|.+.++ +||+|+||||+||||+|++|+||+++||.+||+||+ +|++.|+|++||||+|||||||+++
T Consensus        49 ~~~KRFyK~v~V~~~~~-gg~~V~LDgR~lKTP~k~~L~vPs~~LA~aIA~EW~-aQ~e~I~p~~MPLT~La~tAID~~~  126 (284)
T 2r6i_A           49 PLPKRFYKDVTVADVEE-GGFTILLDGKPLRTPAKKPLVAPSRALADLLRDEWD-AQKEVVNPVVMPVSRHVNTAIDGIA  126 (284)
T ss_dssp             TSCBCCCSCEEEEECTT-SCEEEEETTEECBCTTSCBCCBSSHHHHHHHHHHHH-TCSSBCCGGGCHHHHHHHHHHHTTG
T ss_pred             hhcccceeeceeEEcCC-CCeEEEeCCCcCCCCCCCeeecCcHHHHHHHHHHHH-hhhccCccCCCcHHHHHHHHHccCc
Confidence            57899999999998653 489999999999999999999999999999999999 8999999999999999999999999


Q ss_pred             CChHHHHHHHHhhcCCceEeEecCCCCCcchHHHHHHHhhhhHHHHHHHHHhCCcccccCCccCCCCCHHHHHHHHHHHh
Q 020035          171 LTRPKIIEHLMKKFNQDLVFCRAPADNDLTSGVHERQVQKIDPLLKWVESEFGFKPVVYSSFFGGKQEDGLIKTVENLMK  250 (332)
Q Consensus       171 ~~r~~ii~~Ll~Yl~tDtvcyra~~p~~L~~~L~~~Q~e~WdPll~W~~~~fgv~l~~t~gi~~~~Q~~~t~~~l~~~L~  250 (332)
                      .+|+.++++|++|++|||||||+++|    +.|+++|.+.|+|||+||+++||+++.+++||++++||+++++++++||.
T Consensus       127 ~~r~~v~~~ll~yl~tDtlcyra~~p----~~L~~~Q~e~wdPll~w~~~~~gv~l~~~~gi~~~~Qp~~t~~~l~~~l~  202 (284)
T 2r6i_A          127 SDTQAVFEDILRFSSSDLLCYRAGDP----EALVARQTDYWDPVLDWATNVLGARFILVEGVMHRDQPREAIAAFAVTLK  202 (284)
T ss_dssp             GGHHHHHHHHHHHHHTCTTTEECCCC----HHHHHHHHHHHHHHHHHHHHHHCCCCCCEESSSCCCCCHHHHHHHHHHHH
T ss_pred             chHHHHHHHHHHhcCCceEEEeCCCc----HHHHHHHHHHhHHHHHHHHHHcCCceeeeCCccCCCCCHHHHHHHHHHHH
Confidence            99999999999999999999999987    46799999999999999999999999999999999999999999999999


Q ss_pred             CC-CchhHHHHHHHHHHhhHHHHHHHHHcCCCCHHHHHHHhhhhHHHHhhhhcCCCCcchhhHHHHHHHhhHHHHHHHhh
Q 020035          251 KT-DDYELAAIDAIAAAAHSLVIAIGIFRGKLQIEEAIELIRLEEDLQVDKWGLVEGGHDIDIADLRVQISSATVFLGLS  329 (332)
Q Consensus       251 sl-d~w~Laal~~av~~~kSlilaLAl~~g~l~~e~A~~aarLEE~~Q~e~WG~VE~~HDvd~adl~~~L~AA~lf~~l~  329 (332)
                      +| |+|+|+||+.+|.++||+|||+|+++|++++|+||++|||||+||+++||+|||+||+++.+.+ .+.+|+.|+.++
T Consensus       203 ~l~~~~~Laal~~~v~~~kSlilalal~~g~l~~eeA~~aa~LEE~~Q~e~WG~vEeahd~~~~~~~-~~~~Aa~~~~~~  281 (284)
T 2r6i_A          203 KYDTPIALAALHTMTSLTGSAILALALAEGELTLEEAWALAHLDEDWTAEQWGEDEEALERRAVRLI-DMRAALNVLESL  281 (284)
T ss_dssp             TTCSHHHHHHHHHHHHTTTCHHHHHHHHTTSSCHHHHHHHTTHHHHHHHHHHCCCHHHHHHHHHHHH-HHHHHHHHHHHH
T ss_pred             hcCCHHHHHHHHHHHHHHhHHHHHHHHHcCCCCHHHHHHHhhhhHHHHHHHhCCCchHHHHHHHHHH-HHHHHHHHHHHh
Confidence            99 9999999999999999999999999999999999999999999999999999999999999854 445555788887


Q ss_pred             hc
Q 020035          330 RR  331 (332)
Q Consensus       330 r~  331 (332)
                      |.
T Consensus       282 ~~  283 (284)
T 2r6i_A          282 KG  283 (284)
T ss_dssp             C-
T ss_pred             cC
Confidence            74

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	332
d2r31a1	233	d.381.1.1 (A:6-238) ATP12 ATPase {Paracoccus denit	2e-70
d2r6ia1	261	d.381.1.1 (A:1-261) Uncharacterized protein Atu147	3e-66

>d2r31a1 d.381.1.1 (A:6-238) ATP12 ATPase {Paracoccus denitrificans [TaxId: 266]} Length = 233

class: Alpha and beta proteins (a+b)
fold: ATP12-like
superfamily: ATP12-like
family: ATP12-like
domain: ATP12 ATPase
species: Paracoccus denitrificans [TaxId: 266]

 Score =  217 bits (553), Expect = 2e-70
 Identities = 66/237 (27%), Positives = 108/237 (45%), Gaps = 8/237 (3%)

Query: 94  KRFYEKVSTREADDGNGWTVMLDYRTLKTPSKRPLKLPTLGLAKAIGAEWDYQQTDGIRP 153
           +RF+  V   + + G  W V+LD R L+TP K+PL+LPT  LA AI  EW   Q + I P
Sbjct: 5   RRFWASVGIHKEEGG--WAVLLDERPLRTPGKQPLRLPTEALALAIAEEWQAVQ-EVIDP 61

Query: 154 FMMPLMKLACTALERVPLTRPKIIEHLMKKFNQDLVFCRAPADNDLTSGVHERQVQKIDP 213
             MPL + A +A+E+V      +   L      DL+  RA A       +   Q +  DP
Sbjct: 62  NAMPLTRSANSAIEKVAPQFDAVAAMLGDYGGTDLLSYRADAPEA----LVRAQAEGWDP 117

Query: 214 LLKWVESEFGFKPVVYSSFFGGKQEDGLIKTVENLMKKTDDYELAAIDAIAAAAHSLVIA 273
           L+ W  +E      +        Q+  ++  +   +   D + L A+  +     SL++ 
Sbjct: 118 LIDWAATELRAPLRITHGVIPVPQDPVVLLKLRAEVASLDPFGLTALHDLVTLPGSLILG 177

Query: 274 IGIFRGKLQIEEAIELIRLEEDLQVDKWGLVEGGHDIDIADLRVQISSATVFLGLSR 330
           + + RG++    A  L R++E+ Q ++WG  E       A     +  +  F  L+R
Sbjct: 178 LAVIRGRIDAPTAHALSRIDEEFQAERWGRDEEAEAQA-ASRLAAMRDSERFWHLTR 233

>d2r6ia1 d.381.1.1 (A:1-261) Uncharacterized protein Atu1473 {Agrobacterium tumefaciens [TaxId: 358]} Length = 261

class: Alpha and beta proteins (a+b)
fold: ATP12-like
superfamily: ATP12-like
family: ATP12-like
domain: Uncharacterized protein Atu1473
species: Agrobacterium tumefaciens [TaxId: 358]

 Score =  207 bits (527), Expect = 3e-66
 Identities = 65/238 (27%), Positives = 116/238 (48%), Gaps = 8/238 (3%)

Query: 94  KRFYEKVSTREADDGNGWTVMLDYRTLKTPSKRPLKLPTLGLAKAIGAEWDYQQTDGIRP 153
           KRFY+ V+  + ++G G+T++LD + L+TP+K+PL  P+  LA  +  EWD  Q + + P
Sbjct: 31  KRFYKDVTVADVEEG-GFTILLDGKPLRTPAKKPLVAPSRALADLLRDEWD-AQKEVVNP 88

Query: 154 FMMPLMKLACTALERVPLTRPKIIEHLMKKFNQDLVFCRAPADNDLTSGVHERQVQKIDP 213
            +MP+ +   TA++ +      + E +++  + DL+  RA         +  RQ    DP
Sbjct: 89  VVMPVSRHVNTAIDGIASDTQAVFEDILRFSSSDLLCYRAGDPEA----LVARQTDYWDP 144

Query: 214 LLKWVESEFGFKPVVYSSFFGGKQEDGLIKTVENLMKKTDD-YELAAIDAIAAAAHSLVI 272
           +L W  +  G + ++        Q    I      +KK D    LAA+  + +   S ++
Sbjct: 145 VLDWATNVLGARFILVEGVMHRDQPREAIAAFAVTLKKYDTPIALAALHTMTSLTGSAIL 204

Query: 273 AIGIFRGKLQIEEAIELIRLEEDLQVDKWGLVEGGHDIDIADLRVQISSATVFLGLSR 330
           A+ +  G+L +EEA  L  L+ED   ++WG  E   +     L   + +A   L   +
Sbjct: 205 ALALAEGELTLEEAWALAHLDEDWTAEQWGEDEEALERRAVRLI-DMRAALNVLESLK 261

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	332
d2r31a1	233	ATP12 ATPase {Paracoccus denitrificans [TaxId: 266	100.0
d2r6ia1	261	Uncharacterized protein Atu1473 {Agrobacterium tum	100.0

>d2r31a1 d.381.1.1 (A:6-238) ATP12 ATPase {Paracoccus denitrificans [TaxId: 266]}

class: Alpha and beta proteins (a+b)
fold: ATP12-like
superfamily: ATP12-like
family: ATP12-like
domain: ATP12 ATPase
species: Paracoccus denitrificans [TaxId: 266]

Probab=100.00  E-value=6.1e-76  Score=542.61  Aligned_cols=232  Identities=28%  Similarity=0.485  Sum_probs=224.5

Q ss_pred             CCcCcccceeeeeEeCCCCCEEEEeCCCcCCCCCCCceeeCcHHHHHHHHHHhccccCCCccCCCCchhHHHhHhhcCCC
Q 020035           91 IVGKRFYEKVSTREADDGNGWTVMLDYRTLKTPSKRPLKLPTLGLAKAIGAEWDYQQTDGIRPFMMPLMKLACTALERVP  170 (332)
Q Consensus        91 ~~~KRFyK~V~V~~~~~~~g~~V~LDgR~LKTP~~~~L~vPs~~LA~aIA~EW~~~Q~e~I~p~tMPLT~La~tAID~~~  170 (332)
                      +.+|||||+|+|.+.+  +||+|+||||+||||+|++|.||++.||++||.||+ +|++.|+|++||||+||++|||+++
T Consensus         2 ~~~KRFyk~v~v~~~~--~~~~V~LD~r~lkTP~~~~L~vps~~LA~~ia~EW~-~q~~~i~p~~mplt~L~~~aiD~~~   78 (233)
T d2r31a1           2 WKARRFWASVGIHKEE--GGWAVLLDERPLRTPGKQPLRLPTEALALAIAEEWQ-AVQEVIDPNAMPLTRSANSAIEKVA   78 (233)
T ss_dssp             HHTBCCCSCEEEEEET--TEEEEEETTEECBCTTSCBCCBSCHHHHHHHHHHHH-TCCSBCCGGGCHHHHHHHHHHHTTG
T ss_pred             CccccccccceEEEeC--CcEEEEECCccccCCCCCeeecCcHHHHHHHHHHHH-hhhcccCcccChHHHHHHHHhhccc
Confidence            4589999999999875  489999999999999999999999999999999999 8889999999999999999999999


Q ss_pred             CChHHHHHHHHhhcCCceEeEecCCCCCcchHHHHHHHhhhhHHHHHHHHHhCCcccccCCccCCCCCHHHHHHHHHHHh
Q 020035          171 LTRPKIIEHLMKKFNQDLVFCRAPADNDLTSGVHERQVQKIDPLLKWVESEFGFKPVVYSSFFGGKQEDGLIKTVENLMK  250 (332)
Q Consensus       171 ~~r~~ii~~Ll~Yl~tDtvcyra~~p~~L~~~L~~~Q~e~WdPll~W~~~~fgv~l~~t~gi~~~~Q~~~t~~~l~~~L~  250 (332)
                      .+|+.+++.|++|++||+||||+++|+    .|+++|.+.|+|+|+||+++||+++.+++||++++||+++++++++||.
T Consensus        79 ~~r~~~~~~i~~y~~tD~l~yra~~p~----~L~~~Q~~~w~Pil~w~~~~~~~~l~~~~gi~~~~Q~~~~~~~i~~~l~  154 (233)
T d2r31a1          79 PQFDAVAAMLGDYGGTDLLSYRADAPE----ALVRAQAEGWDPLIDWAATELRAPLRITHGVIPVPQDPVVLLKLRAEVA  154 (233)
T ss_dssp             GGHHHHHHHHHHGGGSCGGGEECCCCH----HHHHHHHHHHHHHHHHHHHHSSCCCCCEETTCCCCCCHHHHHHHHHHHH
T ss_pred             hhHHHHHHHHHHHccCCeEEecCCCCh----HHHHHHHHHhHHHHHHHHHHhCCCccccCCCCCCCCCHHHHHHHHHHHH
Confidence            999999999999999999999999984    5799999999999999999999999999999999999999999999999


Q ss_pred             CCCchhHHHHHHHHHHhhHHHHHHHHHcCCCCHHHHHHHhhhhHHHHhhhhcCCCCcchhhHHHHHHHhhHHHHHHHhhh
Q 020035          251 KTDDYELAAIDAIAAAAHSLVIAIGIFRGKLQIEEAIELIRLEEDLQVDKWGLVEGGHDIDIADLRVQISSATVFLGLSR  330 (332)
Q Consensus       251 sld~w~Laal~~av~~~kSlilaLAl~~g~l~~e~A~~aarLEE~~Q~e~WG~VE~~HDvd~adl~~~L~AA~lf~~l~r  330 (332)
                      +||+|+|+||+.++.++||+|||+++++|++++++|+++|+|||+||+++||+||++|| .+++++..+.+|++|++|+|
T Consensus       155 ~l~~~~L~al~~~~~~~kS~il~lal~~~~i~~~~a~~ls~lEE~~Q~e~WG~veea~~-~~~~~~~~~~~a~~F~~Llr  233 (233)
T d2r31a1         155 SLDPFGLTALHDLVTLPGSLILGLAVIRGRIDAPTAHALSRIDEEFQAERWGRDEEAEA-QAASRLAAMRDSERFWHLTR  233 (233)
T ss_dssp             TSCHHHHHHHHHHHHTTTCHHHHHHHHTTSSCHHHHHHHHTHHHHHHHHHHCCCHHHHH-HHHHHHHHHHHHHHHHHHTC
T ss_pred             hCChHHHHHHHHHHHHHhhHHHHHHHHHCCCCHHHHHHHHhhHHHHHHHHcCCcHHHHH-HHHHHHHHHHHHHHHHHHhC
Confidence            99999999999999999999999999999999999999999999999999999999999 55888999999999999986

>d2r6ia1 d.381.1.1 (A:1-261) Uncharacterized protein Atu1473 {Agrobacterium tumefaciens [TaxId: 358]}

class: Alpha and beta proteins (a+b)
fold: ATP12-like
superfamily: ATP12-like
family: ATP12-like
domain: Uncharacterized protein Atu1473
species: Agrobacterium tumefaciens [TaxId: 358]

Probab=100.00  E-value=2.2e-74  Score=540.50  Aligned_cols=233  Identities=27%  Similarity=0.493  Sum_probs=221.9

Q ss_pred             CCcCcccceeeeeEeCCCCCEEEEeCCCcCCCCCCCceeeCcHHHHHHHHHHhccccCCCccCCCCchhHHHhHhhcCCC
Q 020035           91 IVGKRFYEKVSTREADDGNGWTVMLDYRTLKTPSKRPLKLPTLGLAKAIGAEWDYQQTDGIRPFMMPLMKLACTALERVP  170 (332)
Q Consensus        91 ~~~KRFyK~V~V~~~~~~~g~~V~LDgR~LKTP~~~~L~vPs~~LA~aIA~EW~~~Q~e~I~p~tMPLT~La~tAID~~~  170 (332)
                      +.+|||||+|+|.+.++ +||+|+||||+||||+|++|.||++.||.+||.||+ +|++.|+|++||||+||+||||+++
T Consensus        28 ~l~KRFyk~v~v~~~~~-gg~~V~LD~r~lkTP~~~~L~vps~~LA~aiA~EW~-~q~~~i~p~~MPlt~L~~taiD~~~  105 (261)
T d2r6ia1          28 PLPKRFYKDVTVADVEE-GGFTILLDGKPLRTPAKKPLVAPSRALADLLRDEWD-AQKEVVNPVVMPVSRHVNTAIDGIA  105 (261)
T ss_dssp             TSCBCCCSCEEEEECTT-SCEEEEETTEECBCTTSCBCCBSSHHHHHHHHHHHH-TCSSBCCGGGCHHHHHHHHHHHTTG
T ss_pred             cccCcccccceEEEecC-CcEEEEECCCccCCCCCCeeccCcHHHHHHHHHHHH-hCcccCCcccCcHHHHHHHHhhccc
Confidence            56799999999998765 489999999999999999999999999999999999 8999999999999999999999999


Q ss_pred             CChHHHHHHHHhhcCCceEeEecCCCCCcchHHHHHHHhhhhHHHHHHHHHhCCcccccCCccCCCCCHHHHHHHHHHHh
Q 020035          171 LTRPKIIEHLMKKFNQDLVFCRAPADNDLTSGVHERQVQKIDPLLKWVESEFGFKPVVYSSFFGGKQEDGLIKTVENLMK  250 (332)
Q Consensus       171 ~~r~~ii~~Ll~Yl~tDtvcyra~~p~~L~~~L~~~Q~e~WdPll~W~~~~fgv~l~~t~gi~~~~Q~~~t~~~l~~~L~  250 (332)
                      .+|+.+++.|++|++|||||||+++|+    .|+++|.+.|+|+|+||+++||+++.+++||+++.||++++.+++++|.
T Consensus       106 ~~r~~ii~~ll~yl~tDllcyr~~~p~----~L~~~Q~~~wdPil~w~~~~~g~~l~~~~gi~~~~Q~~~~~~~~~~~L~  181 (261)
T d2r6ia1         106 SDTQAVFEDILRFSSSDLLCYRAGDPE----ALVARQTDYWDPVLDWATNVLGARFILVEGVMHRDQPREAIAAFAVTLK  181 (261)
T ss_dssp             GGHHHHHHHHHHHHHTCTTTEECCCCH----HHHHHHHHHHHHHHHHHHHHHCCCCCCEESSSCCCCCHHHHHHHHHHHH
T ss_pred             hhHHHHHHHHHHhccccEEEEecCCch----HHHHHHHHhhHHHHHHHHHhcCCCceeeccccCCCCCHHHHHHHHHHHH
Confidence            999999999999999999999999884    5799999999999999999999999999999999999999999999999


Q ss_pred             CCC-chhHHHHHHHHHHhhHHHHHHHHHcCCCCHHHHHHHhhhhHHHHhhhhcCCCCcchhhHHHHHHHhhHHHHHHHhh
Q 020035          251 KTD-DYELAAIDAIAAAAHSLVIAIGIFRGKLQIEEAIELIRLEEDLQVDKWGLVEGGHDIDIADLRVQISSATVFLGLS  329 (332)
Q Consensus       251 sld-~w~Laal~~av~~~kSlilaLAl~~g~l~~e~A~~aarLEE~~Q~e~WG~VE~~HDvd~adl~~~L~AA~lf~~l~  329 (332)
                      +|| +|+|+||+.++.++||+|||+++++|++++|+|+++|+|||+||+++||+||++||.+..+ +..+.+|+.|+.++
T Consensus       182 ~~d~~~~L~al~~~~~~tkS~iL~lal~~~~i~~e~A~~~s~LEe~~Q~e~WG~deea~d~~~~~-~~~~~~a~~~l~~l  260 (261)
T d2r6ia1         182 KYDTPIALAALHTMTSLTGSAILALALAEGELTLEEAWALAHLDEDWTAEQWGEDEEALERRAVR-LIDMRAALNVLESL  260 (261)
T ss_dssp             TTCSHHHHHHHHHHHHTTTCHHHHHHHHTTSSCHHHHHHHTTHHHHHHHHHHCCCHHHHHHHHHH-HHHHHHHHHHHHHH
T ss_pred             HcccchHHHHHHHHHHHHhhHHHHHHHHhCCCCHHHHHHHhcchHHHHHHHhCCcHHHHHHHHHH-HHHHHHHHHHHHHh
Confidence            998 7999999999999999999999999999999999999999999999999999999977555 67788888888876


Q ss_pred             h
Q 020035          330 R  330 (332)
Q Consensus       330 r  330 (332)
                      |
T Consensus       261 ~  261 (261)
T d2r6ia1         261 K  261 (261)
T ss_dssp             C
T ss_pred             C
Confidence            5