Citrus Sinensis ID: 020053

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330--
Protein Sequence
MAEDRYNLKNPAVKRILQEVKEMQSNPSDDFMSLPLEENIFEWQFAIRGPGDTEFEGGIYHGRIQLPAEYPFKPPSFMLLTVRCCSLMEHKSYCLCADYGVRTNVCAFFPPQPNGRFETQTKICLSISNHHPEHWQPSWSVRTALVALIAFMPTNPNGALGSLDYKKEERRALAIKSREAAPKFGTPERQKLIDEIHEYMLSKAPPVPQLSTCEEQPGNREGEAQASSIDAMVTGAGEGLPAPVGDRIIEEVQEDLPASMNPNPVVAGTSREVPANASGVQLQPKPETRVQKPADDRLFTWAAVGLTIAILVLLLKKFMKSNGHGTVFMDGS
Secondary Structure (PSIPRED)
cccccccccHHHHHHHHHHHHHHHHccccccEEEcccccEEEEEEEEEccccccccccEEEEEEEcccccccccccEEEEcEEcccccccccccEEcccccccccccccccccccccccccEEEEccccccccccccHHHHHHHHHHHHHHcccccccccccccccHHHHHHHHHHHHHHHHHccccccccccHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHcccccEEcccc
Secondary Structure Prediction (SSPRO)
ccccccccccHHHHHHHHHHHHHHccccccccccccccccEEEEEEEEccccccccccEEEEEEEccccccccccEEEEEEEEcccEEEcccEEEEEcccccccEEEEcccccccccccccEEEEEHcccccccccccHHHHHHHHHHHHHcccccccccccHcccHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHcccccccccccccccccHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEcccccccHHHHHHHHHHHHHHHHHHHHHHHHHccccEEEEccc
Coil and Loop (DISEMBL)
maedrynlknpAVKRILQEVKEmqsnpsddfmslpleeNIFEWQFairgpgdtefeggiyhgriqlpaeypfkppsfmLLTVRCcslmehksyclcadygvrtnvcaffppqpngrfetqTKICLSisnhhpehwqpsWSVRTALVALIAFmptnpngalgsldykKEERRALAIKSreaapkfgtperQKLIDEIHEYmlskappvpqlstceeqpgnregeaqaSSIDAMVTgageglpapvgdRIIEEVQedlpasmnpnpvvagtsrevpanasgvqlqpkpetrvqkpaddrLFTWAAVGLTIAILVLLLKKFMksnghgtvfmdgs
Flexible Loop (DISEMBL)
maedrynlknpavKRILQEVKEMQSNPSDDFMSLPLEENIFEWQFAIRGPGDTEFEGGIYHGRIQLPAEYPFKPPSFMLLTVRCCSLMEHKSYCLCADYGVRTNVCAFFPPQPNGRFETQTKICLSISNHHPEHWQPSWSVRTALVALIAFMPTNpngalgsldYKKEERRALAIksreaapkfgtpeRQKLIDEIHEYMLSKAPPVPQLSTCEEQPGNREGEAQASSIDAMVTGAGEGLPAPVGDRIIEEVQEDLPASMNPNPVVAGTSREVPAnasgvqlqpkpetrvqkpaDDRLFTWAAVGLTIAILVLLLKKFMKsnghgtvfmdgs
Low Complexity Region (SEG)
MAEDRYNLKNPAVKRILQEVKEMQSNPSDDFMSLPLEENIFEWQFAIRGPGDTEFEGGIYHGRIQLPAEYPFKPPSFMLLTVRCCSLMEHKSYCLCADYGVRTNVCAFFPPQPNGRFETQTKICLSISNHHPEHWQPSWSVRTALVALIAFMPTNPNGALGSLDYKKEERRALAIKSREAAPKFGTPERQKLIDEIHEYMLSKAPPVPQLSTCEEQPGNREGEAQASSIDAMVTGAGEGLPAPVGDRIIEEVQEDLPASMNPNPVVAGTSREVPANASGVQLQPKPETRVQKPADDRLFTWAAVGLTIAILVLLLKKFMKSNGHGTVFMDGS
Disordered region (IsUnstruct)
*********************************LPLEENIFEWQFAIRGPGDTEFEGGIYHGRIQLPAEYPFKPPSFMLLTVRCCSLMEHKSYCLCADYGVRTNVCAFFPPQPNGRFETQTKICLSISNHHPEHWQPSWSVRTALVALIAFMPTNPNGAL****************************************************************************************************************************************RLFTWAAVGLTIAILVLLLKKFMKSNGH********
Disordered Region (DISOPRED)
***************ILQEVKEMQSNPSDDFMSLPLEENIFEWQFAIRGPGDTEFEGGIYHGRIQLPAEYPFKPPSFMLLTVRCCSLMEHKSYCLCADYGVRTNVCAFFPPQPNGRFETQTKICLSISNHHPEHWQPSWSVRTALVALIAFMPTNPNGALGSLDYKKEERRALAIKSREAAPKFGTPERQKLIDE********************************************************************************************************TWAAVGLTIAILVLLLKKFMKSNGHGTVFM***
Disordered Region (DISEMBL)
MAEDRYNLKNPAVKRILQEVKEMQSNPSDDFMSLPLEENIFEWQFAIRGPGDTEFEGGIYHGRIQLPAEYPFKPPSFMLLTVRCCSLMEHKSYCLCADYGVRTNVCAFFPPQPNGRFETQTKICLSISNHHPEHWQPSWSVRTALVALIAFMPTNPNGALGSLDYKKEERRALAIKSREAAPKFGTPERQKLIDEIHEYMLSKAPPVPQ*****************SSIDAMVTGAGEGLPAPVGDRIIEEVQEDLPASMNPNPVVAGTSREVPANASGVQLQPKPETRVQKPADDRLFTWAAVGLTIAILVLLLKKFMKSNGHGTVFMDGS
Disordered Region (DISPRO)
********KNPAVKRILQEVKEMQSNPSDDFMSLPLEENIFEWQFAIRGPGDTEFEGGIYHGRIQLPAEYPFKPPSFMLLTVRCCSLMEHKSYCLCADYGVRTNVCAFFPPQPNGRFETQTKICLSISNHHPEHWQPSWSVRTALVALIAFMPTNPNGALGSLDYKKEERRALAIKSREAAPKFGTPERQKLIDEIHEYMLSKAP*******************************************************************************KPETRVQKPADDRLFTWAAVGLTIAILVLLLKKFMKSNGHGTVFMDG*
Transmembrane Helix (TMHMM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHooooooooooooooooo
Transmembrane Helix (MEMSAT)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiii
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MAEDRYNLKNPAVKRILQEVKEMQSNPSDDFMSLPLEENIFEWQFAIRGPGDTEFEGGIYHGRIQLPAEYPFKPPSFMLLTVRCCSLMEHKSYCLCADYGVRTNVCAFFPPQPNGRFETQTKICLSISNHHPEHWQPSWSVRTALVALIAFMPTNPNGALGSLDYKKEERRALAIKSREAAPKFGTPERQKLIDEIHEYMLSKAPPVPQLSTCEEQPGNREGEAQASSIDAMVTGAGEGLPAPVGDRIIEEVQEDLPASMNPNPVVAGTSREVPANASGVQLQPKPETRVQKPADDRLFTWAAVGLTIAILVLLLKKFMKSNGHGTVFMDGS
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	332	2.2.26 [Sep-21-2011]
Q9LSP7	309	Ubiquitin-conjugating enz	yes	no	0.888	0.954	0.612	1e-108
Q9Y385	318	Ubiquitin-conjugating enz	yes	no	0.436	0.455	0.536	3e-50
Q9JJZ4	318	Ubiquitin-conjugating enz	yes	no	0.436	0.455	0.536	5e-50
Q6FQK7	246	Ubiquitin-conjugating enz	yes	no	0.403	0.544	0.373	3e-27
Q74Z34	242	Ubiquitin-conjugating enz	yes	no	0.409	0.561	0.357	2e-26
P33296	250	Ubiquitin-conjugating enz	yes	no	0.403	0.536	0.355	4e-26
Q6CMG6	251	Ubiquitin-conjugating enz	yes	no	0.406	0.537	0.359	4e-26
Q8N2K1	259	Ubiquitin-conjugating enz	no	no	0.403	0.517	0.349	1e-25
O42646	227	Ubiquitin-conjugating enz	yes	no	0.406	0.594	0.359	3e-25
Q6BYG4	242	Ubiquitin-conjugating enz	yes	no	0.403	0.553	0.367	4e-25

>sp|Q9LSP7|UBC32_ARATH Ubiquitin-conjugating enzyme E2 32 OS=Arabidopsis thaliana GN=UBC32 PE=2 SV=1

 Score =  390 bits (1002), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 209/341 (61%), Positives = 238/341 (69%), Gaps = 46/341 (13%)

Query: 1   MAEDRYNLKNPAVKRILQEVKEMQSNPSDDFMSLPLEENIFEWQFAIRGPGDTEFEGGIY 60
           MA++RYN KNPAVKRILQEVKEMQ+NPSDDFMSLPLEENIFEWQFAIRGPGDTEFEGGIY
Sbjct: 1   MADERYNRKNPAVKRILQEVKEMQANPSDDFMSLPLEENIFEWQFAIRGPGDTEFEGGIY 60

Query: 61  HGRIQLPAEYPFKPPSFMLLTVRCCSLMEHKSYCLCADYGVRTNVCAFFPPQPNGRFETQ 120
           HGRIQLPA+YPFKPPSFMLLT                               PNGRFET 
Sbjct: 61  HGRIQLPADYPFKPPSFMLLT-------------------------------PNGRFETN 89

Query: 121 TKICLSISNHHPEHWQPSWSVRTALVALIAFMPTNPNGALGSLDYKKEERRALAIKSREA 180
           TKICLSISN+HPEHWQPSWSVRTALVALIAFMPT+PNGALGS+DY K+ERR LAIKSRE 
Sbjct: 90  TKICLSISNYHPEHWQPSWSVRTALVALIAFMPTSPNGALGSVDYPKDERRTLAIKSRET 149

Query: 181 APKFGTPERQKLIDEIHEYMLSKAPPVPQ--LSTCEEQPG-NREGEAQASSIDAMVTGAG 237
            PK+G+PERQK+IDEIH+Y+LSKA  VP+     C + P    E  +Q    +A+     
Sbjct: 150 PPKYGSPERQKIIDEIHQYILSKATVVPKPLPLECSQAPSIVSEAHSQVEPQEAITVVEE 209

Query: 238 EGLPAP---VGDRIIEEVQEDLPASMNPNPVVAGTSREVPANASGVQLQPKPETRV---- 290
             +      V D+IIEE  E    ++N    V   +  +PA    V+     E R+    
Sbjct: 210 RSIATTDTIVDDQIIEETAE----AVNTAASVVPAAAPLPAVEVVVKASVSGEQRMARRA 265

Query: 291 -QKPADDRLFTWAAVGLTIAILVLLLKKFMKSNGHGTVFMD 330
            QKP DDRLFTWAAVGLTIAI+VLLLKKF+KSNG+ T FMD
Sbjct: 266 AQKPVDDRLFTWAAVGLTIAIMVLLLKKFIKSNGYSTGFMD 306

Accepts the ubiquitin from the E1 complex and catalyzes its covalent attachment to other proteins.
Arabidopsis thaliana (taxid: 3702)
EC: 6EC: .EC: 3EC: .EC: 2EC: .EC: 1EC: 9

>sp|Q9Y385|UB2J1_HUMAN Ubiquitin-conjugating enzyme E2 J1 OS=Homo sapiens GN=UBE2J1 PE=1 SV=2

 Score =  199 bits (505), Expect = 3e-50,   Method: Compositional matrix adjust.
 Identities = 95/177 (53%), Positives = 119/177 (67%), Gaps = 32/177 (18%)

Query: 3   EDRYNLKNPAVKRILQEVKEMQSNPSDDFMSLPLEENIFEWQFAIRGPGDTEFEGGIYHG 62
           E RYNLK+PAVKR+++E  E++ +P+D + + PLE+N+FEW F +RGP D++F+GG+YHG
Sbjct: 2   ETRYNLKSPAVKRLMKEAAELK-DPTDHYHAQPLEDNLFEWHFTVRGPPDSDFDGGVYHG 60

Query: 63  RIQLPAEYPFKPPSFMLLTVRCCSLMEHKSYCLCADYGVRTNVCAFFPPQPNGRFETQTK 122
           RI LP EYP KPPS +LLT                                NGRFE   K
Sbjct: 61  RIVLPPEYPMKPPSIILLTA-------------------------------NGRFEVGKK 89

Query: 123 ICLSISNHHPEHWQPSWSVRTALVALIAFMPTNPNGALGSLDYKKEERRALAIKSRE 179
           ICLSIS HHPE WQPSWS+RTAL+A+I FMPT   GA+GSLDY  EERRALA KS++
Sbjct: 90  ICLSISGHHPETWQPSWSIRTALLAIIGFMPTKGEGAIGSLDYTPEERRALAKKSQD 146

Catalyzes the covalent attachment of ubiquitin to other proteins. Seems to function in the selective degradation of misfolded membrane proteins from the endoplasmic reticulum.

Homo sapiens (taxid: 9606)

EC: 6

EC: .

EC: 3

EC: .

EC: 2

EC: .

EC: 1

EC: 9

>sp|Q9JJZ4|UB2J1_MOUSE Ubiquitin-conjugating enzyme E2 J1 OS=Mus musculus GN=Ube2j1 PE=1 SV=2

 Score =  198 bits (504), Expect = 5e-50,   Method: Compositional matrix adjust.
 Identities = 95/177 (53%), Positives = 119/177 (67%), Gaps = 32/177 (18%)

Query: 3   EDRYNLKNPAVKRILQEVKEMQSNPSDDFMSLPLEENIFEWQFAIRGPGDTEFEGGIYHG 62
           E RYNLK+PAVKR+++E  E++ +P+D + + PLE+N+FEW F +RGP D++F+GG+YHG
Sbjct: 2   ETRYNLKSPAVKRLMKEAAELK-DPTDHYHAQPLEDNLFEWHFTVRGPPDSDFDGGVYHG 60

Query: 63  RIQLPAEYPFKPPSFMLLTVRCCSLMEHKSYCLCADYGVRTNVCAFFPPQPNGRFETQTK 122
           RI LP EYP KPPS +LLT                                NGRFE   K
Sbjct: 61  RIVLPPEYPMKPPSIILLTA-------------------------------NGRFEVGKK 89

Query: 123 ICLSISNHHPEHWQPSWSVRTALVALIAFMPTNPNGALGSLDYKKEERRALAIKSRE 179
           ICLSIS HHPE WQPSWS+RTAL+A+I FMPT   GA+GSLDY  EERRALA KS++
Sbjct: 90  ICLSISGHHPETWQPSWSIRTALLAIIGFMPTKGEGAIGSLDYTPEERRALAKKSQD 146

Catalyzes the covalent attachment of ubiquitin to other proteins. Seems to function in the selective degradation of misfolded membrane proteins from the endoplasmic reticulum.

Mus musculus (taxid: 10090)

EC: 6

EC: .

EC: 3

EC: .

EC: 2

EC: .

EC: 1

EC: 9

>sp|Q6FQK7|UBC6_CANGA Ubiquitin-conjugating enzyme E2 6 OS=Candida glabrata (strain ATCC 2001 / CBS 138 / JCM 3761 / NBRC 0622 / NRRL Y-65) GN=UBC6 PE=3 SV=1

 Score =  122 bits (306), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 62/166 (37%), Positives = 90/166 (54%), Gaps = 32/166 (19%)

Query: 12  AVKRILQEVKEMQSNPSDDFMSLPLEENIFEWQFAIRGPGDTEFEGGIYHGRIQLPAEYP 71
           A KR+ +E K M  NP    ++ P EENI EW + I GP DT ++GG YHG +  P++YP
Sbjct: 6   AQKRLTKEYKMMVENPPPFIIARPNEENILEWHYVISGPPDTPYDGGQYHGTLTFPSDYP 65

Query: 72  FKPPSFMLLTVRCCSLMEHKSYCLCADYGVRTNVCAFFPPQPNGRFETQTKICLSISNHH 131
           +KPP+  ++T                               PNGRF+  T++CLS+S++H
Sbjct: 66  YKPPAIRMIT-------------------------------PNGRFKENTRLCLSMSDYH 94

Query: 132 PEHWQPSWSVRTALVALIAFMPTNPNGALGSLDYKKEERRALAIKS 177
           P+ W P WSV T L  L++FM T      GS+   ++E++ LA KS
Sbjct: 95  PDTWNPGWSVATILNGLLSFM-TGDESTTGSITTTQQEKKILAKKS 139

Catalyzes the covalent attachment of ubiquitin to other proteins. Functions in degradation of misfolded or regulated proteins localized in the endoplasmic reticulum (ER) lumen or membrane via the ubiquitin-proteasome system. Cognate E2 conjugating enzyme for the DOA10 ubiquitin ligase complex, which is part of the ERAD-C pathway responsible for the rapid degradation of membrane proteins with misfolded cytoplasmic domains.

Candida glabrata (strain ATCC 2001 / CBS 138 / JCM 3761 / NBRC 0622 / NRRL Y-65) (taxid: 284593)

EC: 6

EC: .

EC: 3

EC: .

EC: 2

EC: .

EC: 1

EC: 9

>sp|Q74Z34|UBC6_ASHGO Ubiquitin-conjugating enzyme E2 6 OS=Ashbya gossypii (strain ATCC 10895 / CBS 109.51 / FGSC 9923 / NRRL Y-1056) GN=UBC6 PE=3 SV=1

 Score =  120 bits (300), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 60/168 (35%), Positives = 88/168 (52%), Gaps = 32/168 (19%)

Query: 12  AVKRILQEVKEMQSNPSDDFMSLPLEENIFEWQFAIRGPGDTEFEGGIYHGRIQLPAEYP 71
           A KR+ +E K M  NP    ++ P E+NI  W + I GP +T +E G YHG +  P +YP
Sbjct: 6   AYKRLSKEYKMMTENPPPYIVAAPKEDNILVWHYVITGPPETPYEDGQYHGTLVFPNDYP 65

Query: 72  FKPPSFMLLTVRCCSLMEHKSYCLCADYGVRTNVCAFFPPQPNGRFETQTKICLSISNHH 131
           F PP+  +LT                               PNGRF   T++CLS+S++H
Sbjct: 66  FNPPAIRMLT-------------------------------PNGRFRENTRLCLSMSDYH 94

Query: 132 PEHWQPSWSVRTALVALIAFMPTNPNGALGSLDYKKEERRALAIKSRE 179
           P+ W PSWSV T L  L++FM T+   ++G+++     +R  A KS+E
Sbjct: 95  PDTWNPSWSVATILTGLLSFMTTD-ESSIGTMESTDSTKRKYAAKSKE 141

Catalyzes the covalent attachment of ubiquitin to other proteins. Functions in degradation of misfolded or regulated proteins localized in the endoplasmic reticulum (ER) lumen or membrane via the ubiquitin-proteasome system. Cognate E2 conjugating enzyme for the DOA10 ubiquitin ligase complex, which is part of the ERAD-C pathway responsible for the rapid degradation of membrane proteins with misfolded cytoplasmic domains.

Ashbya gossypii (strain ATCC 10895 / CBS 109.51 / FGSC 9923 / NRRL Y-1056) (taxid: 284811)

EC: 6

EC: .

EC: 3

EC: .

EC: 2

EC: .

EC: 1

EC: 9

>sp|P33296|UBC6_YEAST Ubiquitin-conjugating enzyme E2 6 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=UBC6 PE=1 SV=1

 Score =  119 bits (297), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 59/166 (35%), Positives = 88/166 (53%), Gaps = 32/166 (19%)

Query: 12  AVKRILQEVKEMQSNPSDDFMSLPLEENIFEWQFAIRGPGDTEFEGGIYHGRIQLPAEYP 71
           A KR+ +E K M  NP    ++ P E+NI EW + I GP DT ++GG YHG +  P++YP
Sbjct: 6   AHKRLTKEYKLMVENPPPYILARPNEDNILEWHYIITGPADTPYKGGQYHGTLTFPSDYP 65

Query: 72  FKPPSFMLLTVRCCSLMEHKSYCLCADYGVRTNVCAFFPPQPNGRFETQTKICLSISNHH 131
           +KPP+  ++T                               PNGRF+  T++CLS+S++H
Sbjct: 66  YKPPAIRMIT-------------------------------PNGRFKPNTRLCLSMSDYH 94

Query: 132 PEHWQPSWSVRTALVALIAFMPTNPNGALGSLDYKKEERRALAIKS 177
           P+ W P WSV T L  L++FM T+     GS+     +++ LA  S
Sbjct: 95  PDTWNPGWSVSTILNGLLSFM-TSDEATTGSITTSDHQKKTLARNS 139

Catalyzes the covalent attachment of ubiquitin to other proteins. Functions in degradation of misfolded or regulated proteins localized in the endoplasmic reticulum (ER) lumen or membrane via the ubiquitin-proteasome system. Cognate E2 conjugating enzyme for the DOA10 ubiquitin ligase complex, which is part of the ERAD-C pathway responsible for the rapid degradation of membrane proteins with misfolded cytoplasmic domains.

Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (taxid: 559292)

EC: 6

EC: .

EC: 3

EC: .

EC: 2

EC: .

EC: 1

EC: 9

>sp|Q6CMG6|UBC6_KLULA Ubiquitin-conjugating enzyme E2 6 OS=Kluyveromyces lactis (strain ATCC 8585 / CBS 2359 / DSM 70799 / NBRC 1267 / NRRL Y-1140 / WM37) GN=UBC6 PE=3 SV=1

 Score =  119 bits (297), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 60/167 (35%), Positives = 89/167 (53%), Gaps = 32/167 (19%)

Query: 12  AVKRILQEVKEMQSNPSDDFMSLPLEENIFEWQFAIRGPGDTEFEGGIYHGRIQLPAEYP 71
           A KR+ +E K + +NP    ++ P E+NI EW + I GP  T +E G YHG +  P++YP
Sbjct: 6   ANKRLTKEYKNIVNNPPPFIIAAPHEDNILEWHYVITGPPSTPYENGQYHGTLTFPSDYP 65

Query: 72  FKPPSFMLLTVRCCSLMEHKSYCLCADYGVRTNVCAFFPPQPNGRFETQTKICLSISNHH 131
           F PP+  ++T                               PNGRF+  T++CLS+S++H
Sbjct: 66  FNPPAIRMIT-------------------------------PNGRFKENTRLCLSMSDYH 94

Query: 132 PEHWQPSWSVRTALVALIAFMPTNPNGALGSLDYKKEERRALAIKSR 178
           PE W P+WSV T L  L++FM T      GS+    +++R LA KS+
Sbjct: 95  PEAWNPAWSVVTILNGLLSFM-TGDEQTTGSVSTSDKDKRTLAKKSK 140

Catalyzes the covalent attachment of ubiquitin to other proteins. Functions in degradation of misfolded or regulated proteins localized in the endoplasmic reticulum (ER) lumen or membrane via the ubiquitin-proteasome system. Cognate E2 conjugating enzyme for the DOA10 ubiquitin ligase complex, which is part of the ERAD-C pathway responsible for the rapid degradation of membrane proteins with misfolded cytoplasmic domains.

Kluyveromyces lactis (strain ATCC 8585 / CBS 2359 / DSM 70799 / NBRC 1267 / NRRL Y-1140 / WM37) (taxid: 284590)

EC: 6

EC: .

EC: 3

EC: .

EC: 2

EC: .

EC: 1

EC: 9

>sp|Q8N2K1|UB2J2_HUMAN Ubiquitin-conjugating enzyme E2 J2 OS=Homo sapiens GN=UBE2J2 PE=1 SV=3

 Score =  117 bits (293), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 58/166 (34%), Positives = 87/166 (52%), Gaps = 32/166 (19%)

Query: 12  AVKRILQEVKEMQSNPSDDFMSLPLEENIFEWQFAIRGPGDTEFEGGIYHGRIQLPAEYP 71
           A +R+ Q+   ++ +P     + PL  NI EW + +RGP  T +EGG YHG++  P E+P
Sbjct: 13  ATQRLKQDYLRIKKDPVPYICAEPLPSNILEWHYVVRGPEMTPYEGGYYHGKLIFPREFP 72

Query: 72  FKPPSFMLLTVRCCSLMEHKSYCLCADYGVRTNVCAFFPPQPNGRFETQTKICLSISNHH 131
           FKPPS  ++T                               PNGRF+  T++CLSI++ H
Sbjct: 73  FKPPSIYMIT-------------------------------PNGRFKCNTRLCLSITDFH 101

Query: 132 PEHWQPSWSVRTALVALIAFMPTNPNGALGSLDYKKEERRALAIKS 177
           P+ W P+WSV T L  L++FM       LGS++     +R LA++S
Sbjct: 102 PDTWNPAWSVSTILTGLLSFM-VEKGPTLGSIETSDFTKRQLAVQS 146

Catalyzes the covalent attachment of ubiquitin to other proteins. Seems to function in the selective degradation of misfolded membrane proteins from the endoplasmic reticulum (ERAD).

Homo sapiens (taxid: 9606)

EC: 6

EC: .

EC: 3

EC: .

EC: 2

EC: .

EC: 1

EC: 9

>sp|O42646|UBC6_SCHPO Ubiquitin-conjugating enzyme E2 6 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=ubc6 PE=2 SV=1

 Score =  115 bits (289), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 60/167 (35%), Positives = 86/167 (51%), Gaps = 32/167 (19%)

Query: 12  AVKRILQEVKEMQSNPSDDFMSLPLEENIFEWQFAIRGPGDTEFEGGIYHGRIQLPAEYP 71
           A KR+++E   +Q NP +   + P  ENI EW + I GP DT +EGG YHG +  P +YP
Sbjct: 6   AYKRLMKEYLALQKNPVELVDAKPATENILEWHYIITGPPDTPYEGGQYHGTLIFPPDYP 65

Query: 72  FKPPSFMLLTVRCCSLMEHKSYCLCADYGVRTNVCAFFPPQPNGRFETQTKICLSISNHH 131
           FKPP+  ++T                               P+GRF+T T++CLS S+ H
Sbjct: 66  FKPPAIRMIT-------------------------------PSGRFQTNTRLCLSFSDFH 94

Query: 132 PEHWQPSWSVRTALVALIAFMPTNPNGALGSLDYKKEERRALAIKSR 178
           P+ W PSW V T LV L++FM T+     G +   +  RR  A  ++
Sbjct: 95  PKSWNPSWMVSTILVGLVSFM-TSDEITTGGIVTSESTRRTYAKDTK 140

Catalyzes the covalent attachment of ubiquitin to other proteins. Functions in degradation of misfolded or regulated proteins localized in the endoplasmic reticulum (ER) lumen or membrane via the ubiquitin-proteasome system. Cognate E2 conjugating enzyme for the doa10 ubiquitin ligase complex, which is part of the ERAD-C pathway responsible for the rapid degradation of membrane proteins with misfolded cytoplasmic domains.

Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812)

EC: 6

EC: .

EC: 3

EC: .

EC: 2

EC: .

EC: 1

EC: 9

>sp|Q6BYG4|UBC6_DEBHA Ubiquitin-conjugating enzyme E2 6 OS=Debaryomyces hansenii (strain ATCC 36239 / CBS 767 / JCM 1990 / NBRC 0083 / IGC 2968) GN=UBC6 PE=3 SV=2

 Score =  115 bits (289), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 61/166 (36%), Positives = 85/166 (51%), Gaps = 32/166 (19%)

Query: 14  KRILQEVKEMQSNPSDDFMSLPLEENIFEWQFAIRGPGDTEFEGGIYHGRIQLPAEYPFK 73
           KR+ +E K +  NP     + P +ENI EW + I GP  T FE G YHG ++ P+EYPFK
Sbjct: 8   KRLTKEYKAITLNPPPYVSAKPNDENILEWHYVITGPPHTPFEEGQYHGILRFPSEYPFK 67

Query: 74  PPSFMLLTVRCCSLMEHKSYCLCADYGVRTNVCAFFPPQPNGRFETQTKICLSISNHHPE 133
           PPS  ++T                               PNGRF   T++CLS+S++HP+
Sbjct: 68  PPSISMIT-------------------------------PNGRFACNTRLCLSMSDYHPD 96

Query: 134 HWQPSWSVRTALVALIAFMPTNPNGALGSLDYKKEERRALAIKSRE 179
            W P+WSV T L  L++FM T      GS+      ++ LA  S+E
Sbjct: 97  TWNPAWSVATILTGLLSFM-TGDESTTGSITTSDNVKKRLARSSKE 141

Catalyzes the covalent attachment of ubiquitin to other proteins. Functions in degradation of misfolded or regulated proteins localized in the endoplasmic reticulum (ER) lumen or membrane via the ubiquitin-proteasome system. Cognate E2 conjugating enzyme for the DOA10 ubiquitin ligase complex, which is part of the ERAD-C pathway responsible for the rapid degradation of membrane proteins with misfolded cytoplasmic domains.

Debaryomyces hansenii (strain ATCC 36239 / CBS 767 / JCM 1990 / NBRC 0083 / IGC 2968) (taxid: 284592)

EC: 6

EC: .

EC: 3

EC: .

EC: 2

EC: .

EC: 1

EC: 9

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	332
224108707	308	predicted protein [Populus trichocarpa]	0.897	0.967	0.710	1e-131
255556356	309	non-canonical ubiquitin conjugating enzy	0.900	0.967	0.713	1e-129
224101573	310	predicted protein [Populus trichocarpa]	0.903	0.967	0.707	1e-129
147790480	297	hypothetical protein VITISV_020701 [Viti	0.882	0.986	0.708	1e-125
225431934	297	PREDICTED: ubiquitin-conjugating enzyme	0.882	0.986	0.705	1e-125
388522695	311	unknown [Lotus japonicus]	0.888	0.948	0.693	1e-124
449432914	297	PREDICTED: ubiquitin-conjugating enzyme	0.879	0.983	0.691	1e-123
356529168	308	PREDICTED: ubiquitin-conjugating enzyme	0.885	0.954	0.677	1e-120
357478955	307	Ubiquitin carrier protein E2 [Medicago t	0.885	0.957	0.679	1e-119
356556010	306	PREDICTED: ubiquitin-conjugating enzyme	0.879	0.954	0.686	1e-118

>gi|224108707|ref|XP_002314941.1| predicted protein [Populus trichocarpa] gi|222863981|gb|EEF01112.1| predicted protein [Populus trichocarpa]

 Score =  474 bits (1219), Expect = e-131,   Method: Compositional matrix adjust.
 Identities = 243/342 (71%), Positives = 266/342 (77%), Gaps = 44/342 (12%)

Query: 1   MAEDRYNLKNPAVKRILQEVKEMQSNPSDDFMSLPLEENIFEWQFAIRGPGDTEFEGGIY 60
           MA D+YNLKNP+VKRILQEV+EMQS+PSDDFMSLPLEENIFEWQFAIRGPG+TEFEGGIY
Sbjct: 1   MAVDKYNLKNPSVKRILQEVREMQSSPSDDFMSLPLEENIFEWQFAIRGPGETEFEGGIY 60

Query: 61  HGRIQLPAEYPFKPPSFMLLTVRCCSLMEHKSYCLCADYGVRTNVCAFFPPQPNGRFETQ 120
           HGRIQLPAEYPFKPPSFMLLT                               PNGRFETQ
Sbjct: 61  HGRIQLPAEYPFKPPSFMLLT-------------------------------PNGRFETQ 89

Query: 121 TKICLSISNHHPEHWQPSWSVRTALVALIAFMPTNPNGALGSLDYKKEERRALAIKSREA 180
           TKICLSISNHHPEHWQPSWSVRTAL+ALIAFMPT+PNGALGSLDYKKEERR LA+KSREA
Sbjct: 90  TKICLSISNHHPEHWQPSWSVRTALLALIAFMPTSPNGALGSLDYKKEERRVLAVKSREA 149

Query: 181 APKFGTPERQKLIDEIHEYMLSKAPPVPQLSTC---EEQPGNREGEAQASSIDAMVTGAG 237
           AP+FGTPERQKLIDEIH+YML KAP VPQ ++    EE PGN EGEAQA   DA V  A 
Sbjct: 150 APRFGTPERQKLIDEIHQYMLGKAPSVPQQNSVQGSEEHPGNNEGEAQAQ--DAGVVAAA 207

Query: 238 EGLPAP-------VGDRIIEEVQEDLPASMNPNPVVAGTSREVPANASGVQLQPKPETRV 290
           E LP P       VG+R+IEEV E  P ++NP+P     SRE+PA     QL  +P TRV
Sbjct: 208 EELPNPAVGEIQEVGERVIEEVHE-APVNVNPSPTGTSVSREIPARGPTDQLLQRPVTRV 266

Query: 291 QKPADDRLFTWAAVGLTIAILVLLLKKFMKSNGHGTVFMDGS 332
           QKPADDRLFTWAAVGLTIAI+VLLLKKFMKS+G+G +FMDGS
Sbjct: 267 QKPADDRLFTWAAVGLTIAIVVLLLKKFMKSSGYGALFMDGS 308

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255556356|ref|XP_002519212.1| non-canonical ubiquitin conjugating enzyme, putative [Ricinus communis] gi|223541527|gb|EEF43076.1| non-canonical ubiquitin conjugating enzyme, putative [Ricinus communis]

 Score =  468 bits (1205), Expect = e-129,   Method: Compositional matrix adjust.
 Identities = 242/339 (71%), Positives = 261/339 (76%), Gaps = 40/339 (11%)

Query: 1   MAEDRYNLKNPAVKRILQEVKEMQSNPSDDFMSLPLEENIFEWQFAIRGPGDTEFEGGIY 60
           MAED+YNLKNPAVKRILQEVKEMQSNPSDDFMS+PLEENIFEWQFAIRGP DTEFEGGIY
Sbjct: 1   MAEDKYNLKNPAVKRILQEVKEMQSNPSDDFMSMPLEENIFEWQFAIRGPCDTEFEGGIY 60

Query: 61  HGRIQLPAEYPFKPPSFMLLTVRCCSLMEHKSYCLCADYGVRTNVCAFFPPQPNGRFETQ 120
           HGRIQLP+EYPFKPPSF+LLT                               PNGRFETQ
Sbjct: 61  HGRIQLPSEYPFKPPSFLLLT-------------------------------PNGRFETQ 89

Query: 121 TKICLSISNHHPEHWQPSWSVRTALVALIAFMPTNPNGALGSLDYKKEERRALAIKSREA 180
           TKICLSISNHHPEHWQPSWSVRTALVALIAFMPTNPNGALGSLDYKKEERRALAIKSREA
Sbjct: 90  TKICLSISNHHPEHWQPSWSVRTALVALIAFMPTNPNGALGSLDYKKEERRALAIKSREA 149

Query: 181 APKFGTPERQKLIDEIHEYMLSKAPPVPQLS---TCEEQPGNREGEAQA-----SSIDAM 232
           AP+FGTPERQKLIDEIH+YMLSKAPPVPQLS     EE    +E EA A      ++ A 
Sbjct: 150 APRFGTPERQKLIDEIHQYMLSKAPPVPQLSPSQDSEEHHTGKEDEAHAILQEQGAVAAN 209

Query: 233 VTGAGEGLPAPVGDRIIEEVQEDLPASMNPNPVVAGTSREVPANASGVQLQPKPETRVQK 292
           +          VGDRI+EEV E  P ++NP      TS E+PA AS  QL  +PETRVQ+
Sbjct: 210 LPNLAVSEQLAVGDRIVEEVPE-APVNVNPGATGVRTSTEIPARASSDQLLHRPETRVQR 268

Query: 293 PADDRLFTWAAVGLTIAILVLLLKKFMKSNGHGTVFMDG 331
           PADDRLFTWAAVGLTIAI+VLLLKKF+KS+GHG VFMDG
Sbjct: 269 PADDRLFTWAAVGLTIAIVVLLLKKFLKSSGHGAVFMDG 307

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224101573|ref|XP_002312335.1| predicted protein [Populus trichocarpa] gi|222852155|gb|EEE89702.1| predicted protein [Populus trichocarpa]

 Score =  466 bits (1198), Expect = e-129,   Method: Compositional matrix adjust.
 Identities = 242/342 (70%), Positives = 258/342 (75%), Gaps = 42/342 (12%)

Query: 1   MAEDRYNLKNPAVKRILQEVKEMQSNPSDDFMSLPLEENIFEWQFAIRGPGDTEFEGGIY 60
           MAED+YNLKNPAVKRILQEVKEMQSNPSDDFMSLPLEENIFEWQFAIRGPG+TEFEGGIY
Sbjct: 1   MAEDKYNLKNPAVKRILQEVKEMQSNPSDDFMSLPLEENIFEWQFAIRGPGETEFEGGIY 60

Query: 61  HGRIQLPAEYPFKPPSFMLLTVRCCSLMEHKSYCLCADYGVRTNVCAFFPPQPNGRFETQ 120
           HGRIQLPAEYPFKPPSFMLLT                               PNGRFETQ
Sbjct: 61  HGRIQLPAEYPFKPPSFMLLT-------------------------------PNGRFETQ 89

Query: 121 TKICLSISNHHPEHWQPSWSVRTALVALIAFMPTNPNGALGSLDYKKEERRALAIKSREA 180
           TKICLSISNHHPEHWQPSWSVRTALVALIAFMPT+PNGALGSLDYKKEERR LA+KSREA
Sbjct: 90  TKICLSISNHHPEHWQPSWSVRTALVALIAFMPTSPNGALGSLDYKKEERRVLAVKSREA 149

Query: 181 APKFGTPERQKLIDEIHEYMLSKAPPVPQLS---TCEEQPGNREGEAQASSIDAMVTGAG 237
           AP+FGTPERQKLIDEIH+YMLSKAP VPQ +     EE P N   E Q SS DA    A 
Sbjct: 150 APRFGTPERQKLIDEIHQYMLSKAPSVPQQNPAQGSEEHPNNSVCETQESSPDAEAVTAA 209

Query: 238 EGLPAP-------VGDRIIEEVQEDLPASMNPNPVVAGTSREVPANASGVQLQPKPETRV 290
           E LP P       VG+R+ E+V E    + NP+P     SREVPA  S  QL  +  TRV
Sbjct: 210 EDLPNPAVGEIQEVGERVFEQVHE-AHITANPSPAGTSASREVPAKCSSDQLLQRQVTRV 268

Query: 291 QKPADDRLFTWAAVGLTIAILVLLLKKFMKSNGHGTVFMDGS 332
           QKPADDRLFTWAAVGL IAI+VLLLKKFMKS+G+G  FMDGS
Sbjct: 269 QKPADDRLFTWAAVGLAIAIVVLLLKKFMKSSGYGAFFMDGS 310

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147790480|emb|CAN72172.1| hypothetical protein VITISV_020701 [Vitis vinifera]

 Score =  456 bits (1172), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 238/336 (70%), Positives = 257/336 (76%), Gaps = 43/336 (12%)

Query: 1   MAEDRYNLKNPAVKRILQEVKEMQSNPSDDFMSLPLEENIFEWQFAIRGPGDTEFEGGIY 60
           MAED+YNLKNP VKRILQEVKEMQSNPSDDFMSLPLEENIFEWQFAIRGP DTEFEGGIY
Sbjct: 1   MAEDKYNLKNPGVKRILQEVKEMQSNPSDDFMSLPLEENIFEWQFAIRGPSDTEFEGGIY 60

Query: 61  HGRIQLPAEYPFKPPSFMLLTVRCCSLMEHKSYCLCADYGVRTNVCAFFPPQPNGRFETQ 120
           HGRIQLPAEYPF+PPSFMLLT                               PNGRFETQ
Sbjct: 61  HGRIQLPAEYPFQPPSFMLLT-------------------------------PNGRFETQ 89

Query: 121 TKICLSISNHHPEHWQPSWSVRTALVALIAFMPTNPNGALGSLDYKKEERRALAIKSREA 180
           TKICLSISNHHPEHWQPSWSVRTALVALIAFMPT+PNGALGSLDYKKEER ALAIKSREA
Sbjct: 90  TKICLSISNHHPEHWQPSWSVRTALVALIAFMPTSPNGALGSLDYKKEERHALAIKSREA 149

Query: 181 APKFGTPERQKLIDEIHEYMLSKAPPVPQLSTC---EEQPGNREGEAQASSIDAMVTGAG 237
           APKFGTPERQKLIDEIHEYMLSK+PPVPQL++    EE   NREGE Q +  +     A 
Sbjct: 150 APKFGTPERQKLIDEIHEYMLSKSPPVPQLNSSQAPEEPSTNREGEGQTNPPNGSAIAAA 209

Query: 238 EGLPAP-VGDRIIEEVQEDLPASMNPNPVVAGTSREVPANASGVQLQPKPETRVQKPADD 296
           + L  P V DRI+EE    +P + NP+PV    SR+    AS V+L  KP  RVQ+ ADD
Sbjct: 210 DELSDPRVADRIVEEEPPQVPLNANPSPV----SRQ----ASAVRLLQKPVPRVQRQADD 261

Query: 297 RLFTWAAVGLTIAILVLLLKKFMKSNGHGTVFMDGS 332
           RL TWAAVGLTIAI+VLLLKKF+KS+GHG VFMD S
Sbjct: 262 RLLTWAAVGLTIAIMVLLLKKFLKSSGHGAVFMDES 297

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225431934|ref|XP_002277394.1| PREDICTED: ubiquitin-conjugating enzyme E2 32 [Vitis vinifera] gi|296083258|emb|CBI22894.3| unnamed protein product [Vitis vinifera]

 Score =  454 bits (1168), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 237/336 (70%), Positives = 256/336 (76%), Gaps = 43/336 (12%)

Query: 1   MAEDRYNLKNPAVKRILQEVKEMQSNPSDDFMSLPLEENIFEWQFAIRGPGDTEFEGGIY 60
           MAED+YNLKNP VKRILQEVKEMQSNPSDDFMSLPLEENIFEWQFAIRGP DTEFEGGIY
Sbjct: 1   MAEDKYNLKNPGVKRILQEVKEMQSNPSDDFMSLPLEENIFEWQFAIRGPSDTEFEGGIY 60

Query: 61  HGRIQLPAEYPFKPPSFMLLTVRCCSLMEHKSYCLCADYGVRTNVCAFFPPQPNGRFETQ 120
           HGRIQLPAEYPF+PPSFMLLT                               PNGRFETQ
Sbjct: 61  HGRIQLPAEYPFQPPSFMLLT-------------------------------PNGRFETQ 89

Query: 121 TKICLSISNHHPEHWQPSWSVRTALVALIAFMPTNPNGALGSLDYKKEERRALAIKSREA 180
           TKICLSISNHHPEHWQPSWSVRTALVALIAFMPT+PNGALGSLDYKKEER ALAIKSREA
Sbjct: 90  TKICLSISNHHPEHWQPSWSVRTALVALIAFMPTSPNGALGSLDYKKEERHALAIKSREA 149

Query: 181 APKFGTPERQKLIDEIHEYMLSKAPPVPQLSTC---EEQPGNREGEAQASSIDAMVTGAG 237
           APKFGTPERQKLIDEIHEYMLSK+PPVPQL++    EE   NREGE Q +  +     A 
Sbjct: 150 APKFGTPERQKLIDEIHEYMLSKSPPVPQLNSSQAPEEPSTNREGEGQTNPPNGSAIAAA 209

Query: 238 EGLPAP-VGDRIIEEVQEDLPASMNPNPVVAGTSREVPANASGVQLQPKPETRVQKPADD 296
           + L  P V DRI+EE    +P + NP+PV    SR+    AS  +L  KP  RVQ+ ADD
Sbjct: 210 DELSDPRVADRIVEEEPPQVPLNANPSPV----SRQ----ASAARLLQKPMPRVQRQADD 261

Query: 297 RLFTWAAVGLTIAILVLLLKKFMKSNGHGTVFMDGS 332
           RL TWAAVGLTIAI+VLLLKKF+KS+GHG VFMD S
Sbjct: 262 RLLTWAAVGLTIAIMVLLLKKFLKSSGHGAVFMDES 297

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388522695|gb|AFK49409.1| unknown [Lotus japonicus]

 Score =  451 bits (1161), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 238/343 (69%), Positives = 257/343 (74%), Gaps = 48/343 (13%)

Query: 4   DRYNLKNPAVKRILQEVKEMQSNPSDDFMSLPLEENIFEWQFAIRGPGDTEFEGGIYHGR 63
           D+YN+KNPAVKRILQEVKEMQSNPSDDFM+LPLEENIFEWQFAIRGPGDTEFEGGI+HGR
Sbjct: 3   DKYNMKNPAVKRILQEVKEMQSNPSDDFMNLPLEENIFEWQFAIRGPGDTEFEGGIFHGR 62

Query: 64  IQLPAEYPFKPPSFMLLTVRCCSLMEHKSYCLCADYGVRTNVCAFFPPQPNGRFETQTKI 123
           IQLPAEYPFKPPSFMLLT                               PNGRFETQTKI
Sbjct: 63  IQLPAEYPFKPPSFMLLT-------------------------------PNGRFETQTKI 91

Query: 124 CLSISNHHPEHWQPSWSVRTALVALIAFMPTNPNGALGSLDYKKEERRALAIKSREAAPK 183
           CLSISNHHPEHWQPSWSVRTALVALIAFMPTNPNGALGSLDYKKEERRALAIKSREA+PK
Sbjct: 92  CLSISNHHPEHWQPSWSVRTALVALIAFMPTNPNGALGSLDYKKEERRALAIKSREASPK 151

Query: 184 FGTPERQKLIDEIHEYMLSKAPPVPQLS---TCEEQPGNREGEAQASSIDAMVTGAGEGL 240
           FGTPERQ+LIDEIHEYMLSKAPPVPQ+S     EEQP   E + Q    +     AGE +
Sbjct: 152 FGTPERQRLIDEIHEYMLSKAPPVPQVSPTQASEEQPPIEEDQTQVQLHNPEALPAGEVI 211

Query: 241 PAPVGDRIIEEVQEDLPASMNPNPVVAGTSREVPAN--ASGVQLQP---------KPETR 289
           P    DRIIEE  +++  + NPNP     S E P+N  +S   LQ          KPETR
Sbjct: 212 PDQSVDRIIEE--QEVTVNANPNPSEVEASTETPSNVVSSNQLLQNSETTRGQNLKPETR 269

Query: 290 VQKPADDRLFTWAAVGLTIAILVLLLKKFMKSNGHGTVFMDGS 332
           VQKP DDRLFTWAA+GLTIAI+VLLLKKF+KS  HG VFMDGS
Sbjct: 270 VQKP-DDRLFTWAAIGLTIAIVVLLLKKFIKSTEHGAVFMDGS 311

Source: Lotus japonicus

Species: Lotus japonicus

Genus: Lotus

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449432914|ref|XP_004134243.1| PREDICTED: ubiquitin-conjugating enzyme E2 32-like [Cucumis sativus] gi|449503860|ref|XP_004162210.1| PREDICTED: ubiquitin-conjugating enzyme E2 32-like [Cucumis sativus]

 Score =  447 bits (1150), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 233/337 (69%), Positives = 256/337 (75%), Gaps = 45/337 (13%)

Query: 1   MAEDRYNLKNPAVKRILQEVKEMQSNPSDDFMSLPLEENIFEWQFAIRGPGDTEFEGGIY 60
           MAED+YNLKNPAVKRILQEVKEMQ+NPSDDFMSLPLEENIFEWQFAIRGPGD+EFEGGIY
Sbjct: 1   MAEDKYNLKNPAVKRILQEVKEMQANPSDDFMSLPLEENIFEWQFAIRGPGDSEFEGGIY 60

Query: 61  HGRIQLPAEYPFKPPSFMLLTVRCCSLMEHKSYCLCADYGVRTNVCAFFPPQPNGRFETQ 120
           HGRIQLPAEYPFKPPSFMLLT                               PNGRFETQ
Sbjct: 61  HGRIQLPAEYPFKPPSFMLLT-------------------------------PNGRFETQ 89

Query: 121 TKICLSISNHHPEHWQPSWSVRTALVALIAFMPTNPNGALGSLDYKKEERRALAIKSREA 180
           TKICLSISNHHPEHWQPSWSVRTALVALIAFMPTNPNGALGSLDYKKEERR LAIKSREA
Sbjct: 90  TKICLSISNHHPEHWQPSWSVRTALVALIAFMPTNPNGALGSLDYKKEERRVLAIKSREA 149

Query: 181 APKFGTPERQKLIDEIHEYMLSKAPPVPQLSTCE---EQPGNREGEAQASSIDAMVTGAG 237
            PKFGTPERQKLIDEIHEYMLSKAPPVPQ  + +   E+P N E + Q +S  A +  A 
Sbjct: 150 PPKFGTPERQKLIDEIHEYMLSKAPPVPQSGSTDVSGEKPTNEEADVQVTSETAELAAAV 209

Query: 238 EGLP-APVGDRIIEEVQEDLPASMNPNPVVAGTSREVPANASGVQL-QPKPETRVQKPAD 295
           E L  +P  +RI+EE   ++       P VA   R  P++    Q  Q +PETRV KPAD
Sbjct: 210 EELQNSPTINRIVEEAVPEV------QPEVA---RVAPSSRPTTQTEQGRPETRVHKPAD 260

Query: 296 DRLFTWAAVGLTIAILVLLLKKFMKSNGHGTVFMDGS 332
           DRLFTWAA+GLT+AI+VLLLKKFMK++ HG+VFMD S
Sbjct: 261 DRLFTWAAIGLTLAIVVLLLKKFMKASAHGSVFMDES 297

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356529168|ref|XP_003533168.1| PREDICTED: ubiquitin-conjugating enzyme E2 32-like [Glycine max]

 Score =  436 bits (1121), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 231/341 (67%), Positives = 249/341 (73%), Gaps = 47/341 (13%)

Query: 4   DRYNLKNPAVKRILQEVKEMQSNPSDDFMSLPLEENIFEWQFAIRGPGDTEFEGGIYHGR 63
           D+YNLKNPAVKRILQE+KEM SNPSDDFMSLPLEENIFEWQFAIRGP DTEFEGGIYHGR
Sbjct: 3   DKYNLKNPAVKRILQELKEMNSNPSDDFMSLPLEENIFEWQFAIRGPRDTEFEGGIYHGR 62

Query: 64  IQLPAEYPFKPPSFMLLTVRCCSLMEHKSYCLCADYGVRTNVCAFFPPQPNGRFETQTKI 123
           IQLP+EYPFKPPSFMLLT                               PNGRFETQTKI
Sbjct: 63  IQLPSEYPFKPPSFMLLT-------------------------------PNGRFETQTKI 91

Query: 124 CLSISNHHPEHWQPSWSVRTALVALIAFMPTNPNGALGSLDYKKEERRALAIKSREAAPK 183
           CLSISNHHPEHWQPSWSVRTALVALIAFMPTNPNGALGSLDYKKEERR LA+KSREA PK
Sbjct: 92  CLSISNHHPEHWQPSWSVRTALVALIAFMPTNPNGALGSLDYKKEERRTLAVKSREAPPK 151

Query: 184 FGTPERQKLIDEIHEYMLSKAPPVPQLS---TCEEQPGNREGEAQASSIDAMVTGAGEGL 240
           FGTPERQKLIDEIHEYM+SKAPPVPQ S     EE P N E E  A+S++     AGE +
Sbjct: 152 FGTPERQKLIDEIHEYMVSKAPPVPQPSASEASEENPRNEEAETHANSLNPESLTAGEVI 211

Query: 241 PAPVGDRIIEEVQEDLPASMNPNPVVAGTSREVPANASGVQL---------QPKPETRVQ 291
                D I+EE +E L    N NP     SREV  + S  ++          PKPETRVQ
Sbjct: 212 LDQEVDGIVEEQEEVL---ANANPAGVEASREVQPSVSRYEVLQKSDTRVQNPKPETRVQ 268

Query: 292 KPADDRLFTWAAVGLTIAILVLLLKKFMKSNGHGTVFMDGS 332
           KP DDRLFT AA+GLTIAI+VLLLKKF+KS  HG +F DGS
Sbjct: 269 KP-DDRLFTLAAIGLTIAIVVLLLKKFIKSTQHGALFSDGS 308

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357478955|ref|XP_003609763.1| Ubiquitin carrier protein E2 [Medicago truncatula] gi|355510818|gb|AES91960.1| Ubiquitin carrier protein E2 [Medicago truncatula]

 Score =  436 bits (1120), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 231/340 (67%), Positives = 251/340 (73%), Gaps = 46/340 (13%)

Query: 4   DRYNLKNPAVKRILQEVKEMQSNPSDDFMSLPLEENIFEWQFAIRGPGDTEFEGGIYHGR 63
           D+YN+KNPAVKRILQEVKEMQSNPSDDFMSLPLEENIFEWQFAIRGP +TEFEGGIYHGR
Sbjct: 3   DKYNMKNPAVKRILQEVKEMQSNPSDDFMSLPLEENIFEWQFAIRGPRETEFEGGIYHGR 62

Query: 64  IQLPAEYPFKPPSFMLLTVRCCSLMEHKSYCLCADYGVRTNVCAFFPPQPNGRFETQTKI 123
           IQLPAEYPFKPPSFMLLT                               PNGRFETQTKI
Sbjct: 63  IQLPAEYPFKPPSFMLLT-------------------------------PNGRFETQTKI 91

Query: 124 CLSISNHHPEHWQPSWSVRTALVALIAFMPTNPNGALGSLDYKKEERRALAIKSREAAPK 183
           CLSISNHHPEHWQPSWSVRTALVALIAFMPTNPNGALGSLDYKKE+RRALAIKSREA+PK
Sbjct: 92  CLSISNHHPEHWQPSWSVRTALVALIAFMPTNPNGALGSLDYKKEDRRALAIKSREASPK 151

Query: 184 FGTPERQKLIDEIHEYMLSKAPPVPQLSTCE--EQPGNREGEAQASSIDAMVTGAGEGLP 241
           FGTPERQKLIDEIHEYMLS A  VPQ S  +  E+P N E E Q +  +     AGEG+P
Sbjct: 152 FGTPERQKLIDEIHEYMLSMAAVVPQPSPLQASEEPKNEEAETQVTQ-NPEAPPAGEGIP 210

Query: 242 APVGDRIIEEVQEDLPASMNPNPVVAGTSREVPANASGVQL---------QPKPETRVQK 292
              GD I+EE  +++  + NPNP     S E P+  S  QL           KPETRVQK
Sbjct: 211 DQAGDGIVEE--QEVNVNANPNPAGVEASNETPSGVSTNQLPRKSDTRVQNLKPETRVQK 268

Query: 293 PADDRLFTWAAVGLTIAILVLLLKKFMKSNGHGTVFMDGS 332
           P DDRLFT AA+GL IAI+VLLLKKF+KS  HG VFM+GS
Sbjct: 269 P-DDRLFTLAAIGLAIAIMVLLLKKFIKSTEHGAVFMNGS 307

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356556010|ref|XP_003546320.1| PREDICTED: ubiquitin-conjugating enzyme E2 32-like [Glycine max]

 Score =  432 bits (1111), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 234/341 (68%), Positives = 248/341 (72%), Gaps = 49/341 (14%)

Query: 4   DRYNLKNPAVKRILQEVKEMQSNPSDDFMSLPLEENIFEWQFAIRGPGDTEFEGGIYHGR 63
           D+YNLKNPAVKRILQEVKEMQSNPSDDFMSLPLEENIFEWQFAIRGP DTEFEGGIYHGR
Sbjct: 3   DKYNLKNPAVKRILQEVKEMQSNPSDDFMSLPLEENIFEWQFAIRGPRDTEFEGGIYHGR 62

Query: 64  IQLPAEYPFKPPSFMLLTVRCCSLMEHKSYCLCADYGVRTNVCAFFPPQPNGRFETQTKI 123
           IQLP+EYPFKPPSFMLLT                               PNGRFETQTKI
Sbjct: 63  IQLPSEYPFKPPSFMLLT-------------------------------PNGRFETQTKI 91

Query: 124 CLSISNHHPEHWQPSWSVRTALVALIAFMPTNPNGALGSLDYKKEERRALAIKSREAAPK 183
           CLSISNHHPEHWQPSWSVRTALVALIAFMPTNPNGALGSLDYKKEER  LAIKSREA PK
Sbjct: 92  CLSISNHHPEHWQPSWSVRTALVALIAFMPTNPNGALGSLDYKKEERHTLAIKSREAPPK 151

Query: 184 FGTPERQKLIDEIHEYMLSKAPPVPQLSTC---EEQPGNREGEAQASSIDAMVTGAGEGL 240
           FGTPERQKLIDEIHEYMLSKAPPVPQ S     EE P N E E Q +S +     AGEG+
Sbjct: 152 FGTPERQKLIDEIHEYMLSKAPPVPQPSATEASEENPRNEEAETQVNSPNPESLPAGEGI 211

Query: 241 PAPVGDRIIEEVQEDLPASMNPNPVVAGTSREVPANASGVQL---------QPKPETRVQ 291
                D I+EE QE + A    NP     SREV  + S  ++          PKPETRVQ
Sbjct: 212 TDQEVDGIVEE-QEVILA----NPAGVEVSREVQPSVSRNEVLQKSDTRAQNPKPETRVQ 266

Query: 292 KPADDRLFTWAAVGLTIAILVLLLKKFMKSNGHGTVFMDGS 332
           K  DDRLFT AA+GLTIAI+VLLLKKF+KS  HG +F DGS
Sbjct: 267 K-HDDRLFTLAAIGLTIAIVVLLLKKFLKSTQHGALFSDGS 306

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	332
TAIR|locus:2086067	309	UBC32 "AT3G17000" [Arabidopsis	0.719	0.773	0.564	2.1e-61
DICTYBASE|DDB_G0281369	401	DDB_G0281369 "Ubiquitin-conjug	0.234	0.194	0.615	3.3e-49
CGD|CAL0004643	243	orf19.7347 [Candida albicans (	0.210	0.288	0.457	2.5e-31
SGD|S000000902	250	UBC6 "Ubiquitin-conjugating en	0.210	0.28	0.442	1.3e-28
WB|WBGene00022450	203	ubc-26 [Caenorhabditis elegans	0.198	0.325	0.492	1.9e-28
POMBASE|SPAC10F6.05c	227	ubc6 "ubiquitin conjugating en	0.210	0.308	0.457	7.3e-28
UNIPROTKB|B1AMF0	196	UBE2J2 "Ubiquitin-conjugating	0.210	0.357	0.414	1.3e-27
WB|WBGene00006710	218	ubc-15 [Caenorhabditis elegans	0.198	0.302	0.462	2.7e-26
DICTYBASE|DDB_G0286511	241	DDB_G0286511 "putative ubiquit	0.207	0.286	0.436	3.1e-25
TAIR|locus:2020392	237	UBC34 "AT1G17280" [Arabidopsis	0.364	0.510	0.393	4.2e-25

TAIR|locus:2086067 UBC32 "AT3G17000" [Arabidopsis thaliana (taxid:3702)]

 Score = 628 (226.1 bits), Expect = 2.1e-61, P = 2.1e-61
 Identities = 140/248 (56%), Positives = 164/248 (66%)

Query:    90 HKSYCLCADYGVRTNVCAFFPPQPNGRFETQTKICLSISNHHPEHWQPSWSVRTALVALI 149
             H    L ADY  +    +F    PNGRFET TKICLSISN+HPEHWQPSWSVRTALVALI
Sbjct:    61 HGRIQLPADYPFKPP--SFMLLTPNGRFETNTKICLSISNYHPEHWQPSWSVRTALVALI 118

Query:   150 AFMPTNPNGALGSLDYKKEERRALAIKSREAAPKFGTPERQKLIDEIHEYMLSKAPPVPQ 209
             AFMPT+PNGALGS+DY K+ERR LAIKSRE  PK+G+PERQK+IDEIH+Y+LSKA  VP+
Sbjct:   119 AFMPTSPNGALGSVDYPKDERRTLAIKSRETPPKYGSPERQKIIDEIHQYILSKATVVPK 178

Query:   210 -LST-CEEQPGN-REGEAQASSIDAMVTGAGEGLPAP---VGDRIIEEVQEDLPASMNPN 263
              L   C + P    E  +Q    +A+       +      V D+IIEE  E +  + +  
Sbjct:   179 PLPLECSQAPSIVSEAHSQVEPQEAITVVEERSIATTDTIVDDQIIEETAEAVNTAASVV 238

Query:   264 PVVAGTSR-EVPANASGVQLQPKPETRVQKPADDRLFTWAAVGLTIAILVLLLKKFMKSN 322
             P  A     EV   AS    Q       QKP DDRLFTWAAVGLTIAI+VLLLKKF+KSN
Sbjct:   239 PAAAPLPAVEVVVKASVSGEQRMARRAAQKPVDDRLFTWAAVGLTIAIMVLLLKKFIKSN 298

Query:   323 GHGTVFMD 330
             G+ T FMD
Sbjct:   299 GYSTGFMD 306

GO:0004842 "ubiquitin-protein ligase activity" evidence=ISS;IDA

GO:0005634 "nucleus" evidence=ISM

GO:0016881 "acid-amino acid ligase activity" evidence=IEA

GO:0006511 "ubiquitin-dependent protein catabolic process" evidence=RCA;IDA

GO:0005783 "endoplasmic reticulum" evidence=IDA

GO:0016020 "membrane" evidence=IDA

GO:0048471 "perinuclear region of cytoplasm" evidence=IDA

GO:0006301 "postreplication repair" evidence=RCA

GO:0006635 "fatty acid beta-oxidation" evidence=RCA

GO:0009407 "toxin catabolic process" evidence=RCA

GO:0016036 "cellular response to phosphate starvation" evidence=RCA

GO:0019375 "galactolipid biosynthetic process" evidence=RCA

GO:0042631 "cellular response to water deprivation" evidence=RCA

GO:0043161 "proteasomal ubiquitin-dependent protein catabolic process" evidence=RCA

GO:0045892 "negative regulation of transcription, DNA-dependent" evidence=RCA

GO:0051788 "response to misfolded protein" evidence=RCA

GO:0080129 "proteasome core complex assembly" evidence=RCA

DICTYBASE|DDB_G0281369 DDB_G0281369 "Ubiquitin-conjugating enzyme E2 J1" [Dictyostelium discoideum (taxid:44689)]

 Score = 278 (102.9 bits), Expect = 3.3e-49, Sum P(2) = 3.3e-49
 Identities = 48/78 (61%), Positives = 64/78 (82%)

Query:     4 DRYNLKNPAVKRILQEVKEMQSNPSDDFMSLPLEENIFEWQFAIRGPGDTEFEGGIYHGR 63
             D  N  NPAVKRIL+E++E++++ + D+ + PLE+NIFEW F IRGP D++F GGIYHGR
Sbjct:     2 DSCNPNNPAVKRILREIQELRNDTNPDYKAFPLEDNIFEWHFTIRGPQDSDFNGGIYHGR 61

Query:    64 IQLPAEYPFKPPSFMLLT 81
             I LP+EYPFKPP+ +LLT
Sbjct:    62 IILPSEYPFKPPNIVLLT 79

GO:0016881 "acid-amino acid ligase activity" evidence=IEA

CGD|CAL0004643 orf19.7347 [Candida albicans (taxid:5476)]

 Score = 197 (74.4 bits), Expect = 2.5e-31, Sum P(2) = 2.5e-31
 Identities = 32/70 (45%), Positives = 49/70 (70%)

Query:    12 AVKRILQEVKEMQSNPSDDFMSLPLEENIFEWQFAIRGPGDTEFEGGIYHGRIQLPAEYP 71
             A KR+ +E K +Q+NP    ++ P E+NI EW + + GP DT +EGG YHG ++ P +YP
Sbjct:     6 ATKRLNKEYKSIQANPPPYIIAHPSEDNILEWHYVLTGPQDTPYEGGQYHGLLRFPPQYP 65

Query:    72 FKPPSFMLLT 81
             F+PPS +++T
Sbjct:    66 FQPPSILMIT 75

GO:0005789 "endoplasmic reticulum membrane" evidence=IEA

GO:0030433 "ER-associated protein catabolic process" evidence=IEA

GO:0004842 "ubiquitin-protein ligase activity" evidence=IEA

SGD|S000000902 UBC6 "Ubiquitin-conjugating enzyme involved in ERAD" [Saccharomyces cerevisiae (taxid:4932)]

 Score = 185 (70.2 bits), Expect = 1.3e-28, Sum P(2) = 1.3e-28
 Identities = 31/70 (44%), Positives = 46/70 (65%)

Query:    12 AVKRILQEVKEMQSNPSDDFMSLPLEENIFEWQFAIRGPGDTEFEGGIYHGRIQLPAEYP 71
             A KR+ +E K M  NP    ++ P E+NI EW + I GP DT ++GG YHG +  P++YP
Sbjct:     6 AHKRLTKEYKLMVENPPPYILARPNEDNILEWHYIITGPADTPYKGGQYHGTLTFPSDYP 65

Query:    72 FKPPSFMLLT 81
             +KPP+  ++T
Sbjct:    66 YKPPAIRMIT 75

GO:0030433 "ER-associated protein catabolic process" evidence=IGI;IMP

GO:0004842 "ubiquitin-protein ligase activity" evidence=IEA;IMP;IDA

GO:0005789 "endoplasmic reticulum membrane" evidence=IEA;IDA

GO:0000209 "protein polyubiquitination" evidence=TAS

GO:0006513 "protein monoubiquitination" evidence=TAS

GO:0016567 "protein ubiquitination" evidence=IEA

GO:0016874 "ligase activity" evidence=IEA

GO:0016020 "membrane" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0000166 "nucleotide binding" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0005783 "endoplasmic reticulum" evidence=IEA

GO:0016881 "acid-amino acid ligase activity" evidence=IEA

WB|WBGene00022450 ubc-26 [Caenorhabditis elegans (taxid:6239)]

 Score = 181 (68.8 bits), Expect = 1.9e-28, Sum P(2) = 1.9e-28
 Identities = 33/67 (49%), Positives = 48/67 (71%)

Query:   113 PNGRFETQTKICLSISNHHPEHWQPSWSVRTALVALIAFMPTNPNGALGSLDYKKEERRA 172
             PNGRF+T T++CLSIS++HP+ W P+W+V T +  L++FM  N    LGSL   + ER+ 
Sbjct:    79 PNGRFQTNTRLCLSISDYHPDTWNPAWTVSTIITGLMSFMNDN-QPTLGSLVTSESERKL 137

Query:   173 LAIKSRE 179
             LA KS++
Sbjct:   138 LAKKSKQ 144

GO:0016881 "acid-amino acid ligase activity" evidence=IEA

POMBASE|SPAC10F6.05c ubc6 "ubiquitin conjugating enzyme Ubc6 (predicted)" [Schizosaccharomyces pombe (taxid:4896)]

 Score = 184 (69.8 bits), Expect = 7.3e-28, Sum P(2) = 7.3e-28
 Identities = 32/70 (45%), Positives = 45/70 (64%)

Query:    12 AVKRILQEVKEMQSNPSDDFMSLPLEENIFEWQFAIRGPGDTEFEGGIYHGRIQLPAEYP 71
             A KR+++E   +Q NP +   + P  ENI EW + I GP DT +EGG YHG +  P +YP
Sbjct:     6 AYKRLMKEYLALQKNPVELVDAKPATENILEWHYIITGPPDTPYEGGQYHGTLIFPPDYP 65

Query:    72 FKPPSFMLLT 81
             FKPP+  ++T
Sbjct:    66 FKPPAIRMIT 75

GO:0004842 "ubiquitin-protein ligase activity" evidence=ISO

GO:0005524 "ATP binding" evidence=IEA

GO:0005789 "endoplasmic reticulum membrane" evidence=ISO

GO:0016021 "integral to membrane" evidence=IEA

GO:0016567 "protein ubiquitination" evidence=ISO

GO:0030433 "ER-associated protein catabolic process" evidence=ISO

UNIPROTKB|B1AMF0 UBE2J2 "Ubiquitin-conjugating enzyme E2 J2" [Homo sapiens (taxid:9606)]

 Score = 173 (66.0 bits), Expect = 1.3e-27, Sum P(2) = 1.3e-27
 Identities = 29/70 (41%), Positives = 44/70 (62%)

Query:    12 AVKRILQEVKEMQSNPSDDFMSLPLEENIFEWQFAIRGPGDTEFEGGIYHGRIQLPAEYP 71
             A +R+ Q+   ++ +P     + PL  NI EW + +RGP  T +EGG YHG++  P E+P
Sbjct:    13 ATQRLKQDYLRIKKDPVPYICAEPLPSNILEWHYVVRGPEMTPYEGGYYHGKLIFPREFP 72

Query:    72 FKPPSFMLLT 81
             FKPPS  ++T
Sbjct:    73 FKPPSIYMIT 82

GO:0016881 "acid-amino acid ligase activity" evidence=IEA

WB|WBGene00006710 ubc-15 [Caenorhabditis elegans (taxid:6239)]

 Score = 167 (63.8 bits), Expect = 2.7e-26, Sum P(2) = 2.7e-26
 Identities = 31/67 (46%), Positives = 45/67 (67%)

Query:   113 PNGRFETQTKICLSISNHHPEHWQPSWSVRTALVALIAFMPTNPNGALGSLDYKKEERRA 172
             PNGRF+T T++CLSIS++HPE W P W+V   L+ L +FM  N + A GS+    +++R 
Sbjct:    90 PNGRFQTNTRLCLSISDYHPESWNPGWTVSAILIGLHSFMNEN-SPAAGSIAGTPQDQRM 148

Query:   173 LAIKSRE 179
              A  S+E
Sbjct:   149 YAAASKE 155

GO:0016881 "acid-amino acid ligase activity" evidence=IEA

GO:0031625 "ubiquitin protein ligase binding" evidence=IPI

DICTYBASE|DDB_G0286511 DDB_G0286511 "putative ubiquitin-conjugating enzyme E2" [Dictyostelium discoideum (taxid:44689)]

 Score = 168 (64.2 bits), Expect = 3.1e-25, Sum P(3) = 3.1e-25
 Identities = 31/71 (43%), Positives = 43/71 (60%)

Query:    13 VKRILQEVKEMQSNPS--DDFMSLPLEENIFEWQFAIRGPGDTEFEGGIYHGRIQLPAEY 70
             V R+ +E+  +  N    D F++ P   NI EW + I GP DT + GG YHG+I  P EY
Sbjct:     7 VTRLKKELLALSKNEDIKDIFIAKPSISNILEWHYVIYGPPDTPYHGGYYHGQIIFPVEY 66

Query:    71 PFKPPSFMLLT 81
             P+KPPS ++ T
Sbjct:    67 PYKPPSILMTT 77

GO:0016881 "acid-amino acid ligase activity" evidence=IEA

GO:0004842 "ubiquitin-protein ligase activity" evidence=IEA

GO:0016874 "ligase activity" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0016020 "membrane" evidence=IEA

GO:0005783 "endoplasmic reticulum" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0000166 "nucleotide binding" evidence=IEA

GO:0005789 "endoplasmic reticulum membrane" evidence=IEA

GO:0016567 "protein ubiquitination" evidence=IEA

TAIR|locus:2020392 UBC34 "AT1G17280" [Arabidopsis thaliana (taxid:3702)]

 Score = 170 (64.9 bits), Expect = 4.2e-25, Sum P(2) = 4.2e-25
 Identities = 52/132 (39%), Positives = 72/132 (54%)

Query:   113 PNGRFETQTKICLSISNHHPEHWQPSWSVRTALVALIAFM-PTNPNGALGSLDYKKEERR 171
             PNGRF TQ KICLS+S+ HPE W P WSV + L  L++FM  T+P    GS++    E++
Sbjct:    76 PNGRFMTQKKICLSMSDFHPESWNPMWSVSSILTGLLSFMMDTSPT--TGSVNTTVIEKQ 133

Query:   172 ALAIKSREAAPKFGTPERQKLIDE-IHEYMLSKAPP--VPQLSTCEE-QPGNREGEAQAS 227
              LA KS   A    TP  +KL  E + +Y   +       QL+T E  Q  + + E++  
Sbjct:   134 RLA-KS-SLAFNCKTPAFRKLFPEYVEKYNQQQLAEQATTQLTTPESPQKSDTKVESE-K 190

Query:   228 SIDAMVTGAGEG 239
             +ID    G  EG
Sbjct:   191 TIDP-TKGDSEG 201

GO:0004842 "ubiquitin-protein ligase activity" evidence=ISS;IDA

GO:0016881 "acid-amino acid ligase activity" evidence=IEA

GO:0006511 "ubiquitin-dependent protein catabolic process" evidence=IDA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q9LSP7	UBC32_ARATH	6, ., 3, ., 2, ., 1, 9	0.6129	0.8885	0.9546	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

Prediction Level	EC number	Confidence of Prediction
3rd Layer	6.3.2.19	0.991
3rd Layer	6.3.2	0.976

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input:
	estExt_fgenesh4_pg.C_LG_X1296	hypothetical protein (308 aa)
		(Populus trichocarpa)
Predicted Functional Partners:
	fgenesh4_pm.C_LG_I001037	hypothetical protein (1054 aa)						•			0.800
	eugene3.00090669	hypothetical protein (1110 aa)						•			0.800

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	332
cd00195	141	cd00195, UBCc, Ubiquitin-conjugating enzyme E2, ca	2e-39
pfam00179	139	pfam00179, UQ_con, Ubiquitin-conjugating enzyme	1e-27
COG5078	153	COG5078, COG5078, Ubiquitin-protein ligase [Posttr	3e-26
smart00212	145	smart00212, UBCc, Ubiquitin-conjugating enzyme E2,	8e-26
PLN00172	147	PLN00172, PLN00172, ubiquitin conjugating enzyme;	4e-13
PTZ00390	152	PTZ00390, PTZ00390, ubiquitin-conjugating enzyme;	1e-07

>gnl|CDD|238117 cd00195, UBCc, Ubiquitin-conjugating enzyme E2, catalytic (UBCc) domain

 Score =  135 bits (343), Expect = 2e-39
 Identities = 50/167 (29%), Positives = 79/167 (47%), Gaps = 36/167 (21%)

Query: 13  VKRILQEVKEMQSNPSDDFMSLPLEENIFEWQFAIRGPGDTEFEGGIYHGRIQLPAEYPF 72
            KR+ +E+K+++ +P     + P+EEN+ EW   IRGP DT +EGGI+   I+ P +YPF
Sbjct: 1   SKRLQKELKDLKKDPPSGISAEPVEENLLEWHGTIRGPPDTPYEGGIFKLDIEFPEDYPF 60

Query: 73  KPPSFMLLTVRCCSLMEHKSYCLCADYGVRTNVCAFFPPQPNGRFETQTKICLSISNHHP 132
           KPP      VR  + +                         +   +   KICLSI   H 
Sbjct: 61  KPP-----KVRFVTKI------------------------YHPNVDENGKICLSILKTH- 90

Query: 133 EHWQPSWSVRTALVALIAFMPTNPNGALGSLDYKKEERRALAIKSRE 179
             W P++++RT L++L + +   PN +         E   L  ++RE
Sbjct: 91  -GWSPAYTLRTVLLSLQSLL-NEPNPSDPL----NAEAAKLYKENRE 131

This is part of the ubiquitin-mediated protein degradation pathway in which a thiol-ester linkage forms between a conserved cysteine and the C-terminus of ubiquitin and complexes with ubiquitin protein ligase enzymes, E3. This pathway regulates many fundamental cellular processes. There are also other E2s which form thiol-ester linkages without the use of E3s as well as several UBC homologs (TSG101, Mms2, Croc-1 and similar proteins) which lack the active site cysteine essential for ubiquitination and appear to function in DNA repair pathways which were omitted from the scope of this CD. Length = 141

>gnl|CDD|215772 pfam00179, UQ_con, Ubiquitin-conjugating enzyme

 Score =  104 bits (262), Expect = 1e-27
 Identities = 41/143 (28%), Positives = 71/143 (49%), Gaps = 32/143 (22%)

Query: 15  RILQEVKEMQSNPSDDFMSLPLEENIFEWQFAIRGPGDTEFEGGIYHGRIQLPAEYPFKP 74
           R+ +E+KE+  +P     + P+++N+FEW+  I GP  T +EGG++   I+ P +YPFKP
Sbjct: 1   RLQKELKELLKDPPPGISAFPVDDNLFEWEVTIIGPEGTPYEGGVFKLDIEFPEDYPFKP 60

Query: 75  PSFMLLTVRCCSLMEHKSYCLCADYGVRTNVCAFFPPQPNGRFETQTKICLSISNHHPEH 134
           P      V+  + + H             NV       P+G       ICL I     E+
Sbjct: 61  P-----KVKFTTKIYH------------PNV------DPSGE------ICLDIL--KDEN 89

Query: 135 WQPSWSVRTALVALIAFMPTNPN 157
           W P+ ++   L+++ + + + PN
Sbjct: 90  WSPALTIEQVLLSIQSLL-SEPN 111

Proteins destined for proteasome-mediated degradation may be ubiquitinated. Ubiquitination follows conjugation of ubiquitin to a conserved cysteine residue of UBC homologues. TSG101 is one of several UBC homologues that lacks this active site cysteine. Length = 139

>gnl|CDD|227410 COG5078, COG5078, Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]

 Score =  101 bits (254), Expect = 3e-26
 Identities = 43/150 (28%), Positives = 74/150 (49%), Gaps = 34/150 (22%)

Query: 11  PAVKRILQEVKEMQSNPSDDFMSLPLEE-NIFEWQFAIRGPGDTEFEGGIYHGRIQLPAE 69
            A+KR+L+E+K++Q +P     + P+++ N+F W+  I GP DT +EGGI+   ++ P +
Sbjct: 5   SALKRLLKELKKLQKDPPPGISAGPVDDDNLFHWEATITGPPDTPYEGGIFKLTLEFPED 64

Query: 70  YPFKPPSFMLLTVRCCSLMEHKSYCLCADYGVRTNVCAFFPPQPNGRFETQTKICLSISN 129
           YPFKPP      VR  + + H                      PN   +    +CL I  
Sbjct: 65  YPFKPP-----KVRFTTKIFH----------------------PN--VDPSGNVCLDILK 95

Query: 130 HHPEHWQPSWSVRTALVALIAFMPTNPNGA 159
              + W P +++ T L++L + +  +PN  
Sbjct: 96  ---DRWSPVYTLETILLSLQSLL-LSPNPD 121

Length = 153

>gnl|CDD|214562 smart00212, UBCc, Ubiquitin-conjugating enzyme E2, catalytic domain homologues

 Score =  100 bits (250), Expect = 8e-26
 Identities = 40/144 (27%), Positives = 67/144 (46%), Gaps = 33/144 (22%)

Query: 15  RILQEVKEMQSNPSDDFMSLPL-EENIFEWQFAIRGPGDTEFEGGIYHGRIQLPAEYPFK 73
           R+L+E+KE++ +P   F + P+ +EN+ EW   I GP  T +EGG++   I+ P +YPFK
Sbjct: 1   RLLKELKELRKDPPPGFTAYPVDDENLLEWTGTIVGPPGTPYEGGVFKLTIEFPEDYPFK 60

Query: 74  PPSFMLLTVRCCSLMEHKSYCLCADYGVRTNVCAFFPPQPNGRFETQTKICLSISNHHPE 133
           PP                                F     +   ++  +ICL I     E
Sbjct: 61  PPK-----------------------------VKFITKIYHPNVDSSGEICLDI--LKQE 89

Query: 134 HWQPSWSVRTALVALIAFMPTNPN 157
            W P+ ++ T L++L + + + PN
Sbjct: 90  KWSPALTLETVLLSLQSLL-SEPN 112

Proteins destined for proteasome-mediated degradation may be ubiquitinated. Ubiquitination follows conjugation of ubiquitin to a conserved cysteine residue of UBC homologues. This pathway functions in regulating many fundamental processes required for cell viability.TSG101 is one of several UBC homologues that lacks this active site cysteine. Length = 145

>gnl|CDD|177768 PLN00172, PLN00172, ubiquitin conjugating enzyme; Provisional

 Score = 65.9 bits (160), Expect = 4e-13
 Identities = 27/70 (38%), Positives = 41/70 (58%)

Query: 12 AVKRILQEVKEMQSNPSDDFMSLPLEENIFEWQFAIRGPGDTEFEGGIYHGRIQLPAEYP 71
          A KRI +E K++  +P  +  + P +EN+F W  +I GP D+ + GG++   I  P +YP
Sbjct: 2  ATKRIQKEHKDLLKDPPSNCSAGPSDENLFRWTASIIGPSDSPYAGGVFFLSILFPPDYP 61

Query: 72 FKPPSFMLLT 81
          FKPP     T
Sbjct: 62 FKPPKVQFTT 71

Length = 147

>gnl|CDD|240397 PTZ00390, PTZ00390, ubiquitin-conjugating enzyme; Provisional

 Score = 50.2 bits (120), Expect = 1e-07
 Identities = 36/139 (25%), Positives = 58/139 (41%), Gaps = 32/139 (23%)

Query: 14  KRILQEVKEMQSNPSDDFMSLPLEENIFEWQFAIRGPGDTEFEGGIYHGRIQLPAEYPFK 73
           KRI +E + + ++P     + P   N   ++  + GP  T +EGG Y   + LP +YP +
Sbjct: 5   KRIEKETQNLANDPPPGIKAEPDPGNYRHFKILMEGPDGTPYEGGYYKLELFLPEQYPME 64

Query: 74  PPSFMLLTVRCCSLMEHKSYCLCADYGVRTNVCAFFPPQPNGRFETQTKICLSISNHHPE 133
           PP    LT         K Y                   PN   +   +ICL I     +
Sbjct: 65  PPKVRFLT---------KIY------------------HPN--IDKLGRICLDILK---D 92

Query: 134 HWQPSWSVRTALVALIAFM 152
            W P+  +RT L+++ A +
Sbjct: 93  KWSPALQIRTVLLSIQALL 111

Length = 152

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	332
KOG0428	314	consensus Non-canonical ubiquitin conjugating enzy	100.0
KOG0417	148	consensus Ubiquitin-protein ligase [Posttranslatio	100.0
COG5078	153	Ubiquitin-protein ligase [Posttranslational modifi	100.0
PTZ00390	152	ubiquitin-conjugating enzyme; Provisional	100.0
PLN00172	147	ubiquitin conjugating enzyme; Provisional	100.0
KOG0419	152	consensus Ubiquitin-protein ligase [Posttranslatio	100.0
KOG0418	200	consensus Ubiquitin-protein ligase [Posttranslatio	100.0
KOG0425	171	consensus Ubiquitin-protein ligase [Posttranslatio	100.0
KOG0426	165	consensus Ubiquitin-protein ligase [Posttranslatio	100.0
KOG0424	158	consensus Ubiquitin-protein ligase [Posttranslatio	100.0
PF00179	140	UQ_con: Ubiquitin-conjugating enzyme; InterPro: IP	100.0
KOG0894	244	consensus Ubiquitin-protein ligase [Posttranslatio	100.0
cd00195	141	UBCc Ubiquitin-conjugating enzyme E2, catalytic (U	100.0
smart00212	145	UBCc Ubiquitin-conjugating enzyme E2, catalytic do	99.97
KOG0421	175	consensus Ubiquitin-protein ligase [Posttranslatio	99.97
KOG0422	153	consensus Ubiquitin-protein ligase [Posttranslatio	99.96
KOG0416	189	consensus Ubiquitin-protein ligase [Posttranslatio	99.95
KOG0423	223	consensus Ubiquitin-protein ligase [Posttranslatio	99.95
KOG0420	184	consensus Ubiquitin-protein ligase [Posttranslatio	99.93
KOG0427	161	consensus Ubiquitin conjugating enzyme [Posttransl	99.92
KOG0895	1101	consensus Ubiquitin-conjugating enzyme [Posttransl	99.62
KOG0429	258	consensus Ubiquitin-conjugating enzyme-related pro	99.62
KOG0895	1101	consensus Ubiquitin-conjugating enzyme [Posttransl	99.56
KOG0896	138	consensus Ubiquitin-conjugating enzyme E2 [Posttra	99.13
KOG0897	122	consensus Predicted ubiquitin-conjugating enzyme [	97.95
PF14461	133	Prok-E2_B: Prokaryotic E2 family B	97.94
PF05743	121	UEV: UEV domain; InterPro: IPR008883 The N-termina	97.38
PF08694	161	UFC1: Ubiquitin-fold modifier-conjugating enzyme 1	96.26
KOG2391	365	consensus Vacuolar sorting protein/ubiquitin recep	95.84
PF05773	113	RWD: RWD domain; InterPro: IPR006575 The RWD eukar	94.18
KOG3357	167	consensus Uncharacterized conserved protein [Funct	93.96
smart00591	107	RWD domain in RING finger and WD repeat containing	93.11
PF14462	122	Prok-E2_E: Prokaryotic E2 family E	91.74
PF14457	162	Prok-E2_A: Prokaryotic E2 family A	84.98

>KOG0428 consensus Non-canonical ubiquitin conjugating enzyme 1 [Posttranslational modification, protein turnover, chaperones]

Probab=100.00  E-value=3.2e-51  Score=378.26  Aligned_cols=295  Identities=46%  Similarity=0.711  Sum_probs=231.3

Q ss_pred             CCcccCCCChHHHHHHHHHHHHHhhCCCCCeEEecCCCCceEEEEEEeCCCCCCCCCCEEEEEEEcCCCCCCCCCccccc
Q 020053            1 MAEDRYNLKNPAVKRILQEVKEMQSNPSDDFMSLPLEENIFEWQFAIRGPGDTEFEGGIYHGRIQLPAEYPFKPPSFMLL   80 (332)
Q Consensus         1 ma~~~~~m~~~a~kRL~kEl~~l~~~p~~gi~v~p~ednl~~W~v~I~GP~dTpYeGGiF~l~I~fP~~YP~~PP~V~Fl   80 (332)
                      |++.+||.+|++.|||+||.++|+ +|.+.+.+.|.++|+++|+++|.||.||-||||+||.+|.||.+||++||.+..+
T Consensus         1 ~m~erYN~KnpaVkRlmkEa~El~-~Ptd~yha~plEdNlFEWhFtiRGp~dtdFeGGiYHGRI~lPadYPmKPPs~iLL   79 (314)
T KOG0428|consen    1 MMEERYNLKNPAVKRLMKEAAELK-DPTDHYHAQPLEDNLFEWHFTIRGPPDTDFEGGIYHGRIVLPADYPMKPPSIILL   79 (314)
T ss_pred             CchhhhcccCHHHHHHHHHHHHhc-CchhhhhhccchhceeeEEEEeeCCCCCCccCceeeeeEecCCCCCCCCCeEEEE
Confidence            788999999999999999999999 8889999999999999999999999999999999999999999999999999999


Q ss_pred             cccccccccccccccccCCceeecccccCCCCCCccccCCCeEEeecCCCCCCCCCCCCCHHHHHHHHHHhCCCCCCChh
Q 020053           81 TVRCCSLMEHKSYCLCADYGVRTNVCAFFPPQPNGRFETQTKICLSISNHHPEHWQPSWSVRTALVALIAFMPTNPNGAL  160 (332)
Q Consensus        81 T~~~~~~i~Hp~~~~~~~~~~~~n~~~~~h~~PNv~v~~~G~ICL~iL~~~~e~WsP~~ti~sVL~sI~~lL~~nP~~~~  160 (332)
                      |                               |||||+.+.+|||+|.++|+|.|.|+|+|++.|++|+.+|.+.|++++
T Consensus        80 T-------------------------------pNGRFE~nkKiCLSISgyHPEtWqPSWSiRTALlAlIgFmPt~p~GAl  128 (314)
T KOG0428|consen   80 T-------------------------------PNGRFEVNKKICLSISGYHPETWQPSWSIRTALLALIGFMPTKPEGAL  128 (314)
T ss_pred             c-------------------------------CCCceeeCceEEEEecCCCccccCcchhHHHHHHHHHccccCCCCCcc
Confidence            9                               999999999999999999999999999999999999999999999999


Q ss_pred             hhhHhhHHhHHHHHHHHHHHHhh-hCChhHHHHH----H-HHHHHhhcCCCCCCCCCccccCC-C--CCCcccccccccc
Q 020053          161 GSLDYKKEERRALAIKSREAAPK-FGTPERQKLI----D-EIHEYMLSKAPPVPQLSTCEEQP-G--NREGEAQASSIDA  231 (332)
Q Consensus       161 ~a~~~~~~dr~~y~~kare~~~k-ya~~~~~~l~----~-e~~~~~~~~~~~vp~~~~~~~~~-~--~~~~~~~~~~~~~  231 (332)
                      ++.+|-.++|+.+++++++|..| |+.+.+++++    | ++|.+...|+-.++-....|... +  .++.+.|.+...+
T Consensus       129 GSlDYpp~ERr~LAkkS~e~~ck~cGs~mk~~llp~~~d~~~~Q~~eaK~la~q~~f~~E~~~~~k~vsea~~q~~p~et  208 (314)
T KOG0428|consen  129 GSLDYPPEERRALAKKSQEFCCKGCGSAMKDVLLPLKSDSDSSQAQEAKELARQISFKAEVNSSGKTVSEADLQHSPSET  208 (314)
T ss_pred             ccCcCCHHHHHHHHHhhcccCccccCChhhheeeeccCCchHHHHHHHHHHhhcCcchhhhccccchhhhhhccCCcccc
Confidence            99999999999999999999988 9999999998    5 89999888877766555544322 1  2333334433332


Q ss_pred             cccC---CCCCCCCCCCCcccccccccCCCCCCCCCCCCCcccccCC-----CCccCcCCCCCcccccCCCccchhHHHH
Q 020053          232 MVTG---AGEGLPAPVGDRIIEEVQEDLPASMNPNPVVAGTSREVPA-----NASGVQLQPKPETRVQKPADDRLFTWAA  303 (332)
Q Consensus       232 ~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~  303 (332)
                      ...-   +..++.+-..+.+.+.-+.+.+++.|++.+.  +.+..++     .++..-.|.......+++-|+  +||++
T Consensus       209 ~~~~e~~s~~T~~~~~~~~~a~~~e~~~~Vn~n~S~vP--~~~aqpavq~~~~~sp~v~Q~hapR~a~t~~d~--~t~l~  284 (314)
T KOG0428|consen  209 DLQDEIASASTSYGLQNSSAASFHEPTQPVNKNTSMVP--QRRAQPAVQRRLSTSPDVIQGHAPRDAHTDHDG--STVLI  284 (314)
T ss_pred             cchhhhhcccccccccchhhhhhcCCCcccccccccCc--hhcccccccceecCCchhhhccCcccccCCCCC--ceehH
Confidence            2211   1112222223333322222444444444433  2222221     122222222333455666555  99999


Q ss_pred             HHHHHHHHHHHHHHHHHhcCCccccccC
Q 020053          304 VGLTIAILVLLLKKFMKSNGHGTVFMDG  331 (332)
Q Consensus       304 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~  331 (332)
                      +||||||++|++|||.++|||-.-|||.
T Consensus       285 viltiAl~~lif~~~~lan~y~~dfmd~  312 (314)
T KOG0428|consen  285 VILTIALAALIFRRIYLANEYIFDFMDF  312 (314)
T ss_pred             HHHHHHHHHHHHHHHHHhccceeccccc
Confidence            9999999999999999999999999974

>KOG0417 consensus Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]

Probab=100.00  E-value=1.3e-42  Score=301.15  Aligned_cols=143  Identities=31%  Similarity=0.709  Sum_probs=135.4

Q ss_pred             HHHHHHHHHHHHhhCCCCCeEEecCCCCceEEEEEEeCCCCCCCCCCEEEEEEEcCCCCCCCCCcccccccccccccccc
Q 020053           12 AVKRILQEVKEMQSNPSDDFMSLPLEENIFEWQFAIRGPGDTEFEGGIYHGRIQLPAEYPFKPPSFMLLTVRCCSLMEHK   91 (332)
Q Consensus        12 a~kRL~kEl~~l~~~p~~gi~v~p~ednl~~W~v~I~GP~dTpYeGGiF~l~I~fP~~YP~~PP~V~FlT~~~~~~i~Hp   91 (332)
                      +.+||.||+++|++++++||++.|+++|+++|+++|.||.|||||||+|++.|.||++|||+||+|+|+|     +||| 
T Consensus         2 a~~RI~kE~~~l~~dp~~~~~~~~~~dnl~~w~a~I~GP~~SpYEgG~F~l~I~~p~~YP~~PPkV~F~T-----kIyH-   75 (148)
T KOG0417|consen    2 ASKRIIKELQDLLRDPPPGCSAGPVGDNLFHWQATILGPPGSPYEGGVFFLEIHFPEDYPFKPPKVRFLT-----KIYH-   75 (148)
T ss_pred             cHHHHHHHHHHHhcCCCCCCccCCCCCceeeEEEEEECCCCCCcCCCEEEEEEECCCCCCCCCCceEeec-----cccc-
Confidence            4679999999999999999999999999999999999999999999999999999999999999999999     8888 


Q ss_pred             ccccccCCceeecccccCCCCCCccccCCCeEEeecCCCCCCCCCCCCCHHHHHHHHHHhCCC-CCCChhh--hhHhhHH
Q 020053           92 SYCLCADYGVRTNVCAFFPPQPNGRFETQTKICLSISNHHPEHWQPSWSVRTALVALIAFMPT-NPNGALG--SLDYKKE  168 (332)
Q Consensus        92 ~~~~~~~~~~~~n~~~~~h~~PNv~v~~~G~ICL~iL~~~~e~WsP~~ti~sVL~sI~~lL~~-nP~~~~~--a~~~~~~  168 (332)
                                           ||  ++++|.||||||+   +.|+|+++|+.||++|++||.+ ||++++.  .+..|+.
T Consensus        76 ---------------------PN--I~~~G~IclDILk---~~WsPAl~i~~VllsI~sLL~~PnpddPL~~~ia~~~k~  129 (148)
T KOG0417|consen   76 ---------------------PN--IDSNGRICLDILK---DQWSPALTISKVLLSICSLLSDPNPDDPLVPDIAELYKT  129 (148)
T ss_pred             ---------------------CC--cCccccchHHhhh---ccCChhhHHHHHHHHHHHHhcCCCCCccccHHHHHHHHh
Confidence                                 99  6799999999998   8899999999999999999976 7788775  5788899


Q ss_pred             hHHHHHHHHHHHHhhhCC
Q 020053          169 ERRALAIKSREAAPKFGT  186 (332)
Q Consensus       169 dr~~y~~kare~~~kya~  186 (332)
                      ||.+|.+.||+|++|||+
T Consensus       130 d~~~~~~~ARewt~kyA~  147 (148)
T KOG0417|consen  130 DRAKYERTAREWTRKYAM  147 (148)
T ss_pred             hHHHHHHHHHHHHHHHhc
Confidence            999999999999999986

>COG5078 Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]

Probab=100.00  E-value=1.4e-41  Score=298.42  Aligned_cols=145  Identities=33%  Similarity=0.739  Sum_probs=135.6

Q ss_pred             hHHHHHHHHHHHHHhhCCCCCeEEecCCC-CceEEEEEEeCCCCCCCCCCEEEEEEEcCCCCCCCCCccccccccccccc
Q 020053           10 NPAVKRILQEVKEMQSNPSDDFMSLPLEE-NIFEWQFAIRGPGDTEFEGGIYHGRIQLPAEYPFKPPSFMLLTVRCCSLM   88 (332)
Q Consensus        10 ~~a~kRL~kEl~~l~~~p~~gi~v~p~ed-nl~~W~v~I~GP~dTpYeGGiF~l~I~fP~~YP~~PP~V~FlT~~~~~~i   88 (332)
                      ..+.+||++|++.|++++++++++.|.++ |+++|+++|.||.+||||||+|++.|.||++||++||+|+|.|     +|
T Consensus         4 ~~a~~RL~kE~~~l~~~~~~~~~a~p~~d~~l~~w~~~i~GP~dtpYegg~f~~~l~fP~~YP~~PPkv~F~t-----~i   78 (153)
T COG5078           4 PSALKRLLKELKKLQKDPPPGISAGPVDDDNLFHWEATITGPPDTPYEGGIFKLTLEFPEDYPFKPPKVRFTT-----KI   78 (153)
T ss_pred             hhHHHHHHHHHHHHhcCCCCceEEEECCCCcceeEEEEEECCCCCCcCCCEEEEEEECCCCCCCCCCeeeecc-----CC
Confidence            34999999999999999999999999987 9999999999999999999999999999999999999999999     89


Q ss_pred             cccccccccCCceeecccccCCCCCCccccCCCeEEeecCCCCCCCCCCCCCHHHHHHHHHHhCCC-CCCChhh--hhHh
Q 020053           89 EHKSYCLCADYGVRTNVCAFFPPQPNGRFETQTKICLSISNHHPEHWQPSWSVRTALVALIAFMPT-NPNGALG--SLDY  165 (332)
Q Consensus        89 ~Hp~~~~~~~~~~~~n~~~~~h~~PNv~v~~~G~ICL~iL~~~~e~WsP~~ti~sVL~sI~~lL~~-nP~~~~~--a~~~  165 (332)
                      ||                      ||  |+.+|+|||+||+   ++|+|+++|++||++|++||.+ |++++++  |+.+
T Consensus        79 ~H----------------------PN--V~~~G~vCLdIL~---~~WsP~~~l~sILlsl~slL~~PN~~~Pln~daa~~  131 (153)
T COG5078          79 FH----------------------PN--VDPSGNVCLDILK---DRWSPVYTLETILLSLQSLLLSPNPDSPLNTEAATL  131 (153)
T ss_pred             cC----------------------CC--cCCCCCChhHHHh---CCCCccccHHHHHHHHHHHHcCCCCCCCCChHHHHH
Confidence            99                      99  6799999999998   9999999999999999999976 5566665  6788


Q ss_pred             hHHhHHHHHHHHHHHHhhhCC
Q 020053          166 KKEERRALAIKSREAAPKFGT  186 (332)
Q Consensus       166 ~~~dr~~y~~kare~~~kya~  186 (332)
                      +++|++.|.+++|+++.+|+.
T Consensus       132 ~~~d~~~y~~~vr~~~~~~~~  152 (153)
T COG5078         132 YREDKEEYEKKVREWVKKYAE  152 (153)
T ss_pred             HHhCHHHHHHHHHHHHHHhcc
Confidence            899999999999999999874

>PTZ00390 ubiquitin-conjugating enzyme; Provisional

Probab=100.00  E-value=1.4e-38  Score=278.86  Aligned_cols=144  Identities=30%  Similarity=0.591  Sum_probs=135.3

Q ss_pred             HHHHHHHHHHHHhhCCCCCeEEecCCCCceEEEEEEeCCCCCCCCCCEEEEEEEcCCCCCCCCCcccccccccccccccc
Q 020053           12 AVKRILQEVKEMQSNPSDDFMSLPLEENIFEWQFAIRGPGDTEFEGGIYHGRIQLPAEYPFKPPSFMLLTVRCCSLMEHK   91 (332)
Q Consensus        12 a~kRL~kEl~~l~~~p~~gi~v~p~ednl~~W~v~I~GP~dTpYeGGiF~l~I~fP~~YP~~PP~V~FlT~~~~~~i~Hp   91 (332)
                      +.|||++|+++|++++++|+.+.+.++|+++|+++|.||++|||+||+|+++|.||++||++||+|+|.|     +||| 
T Consensus         3 ~~kRl~~E~~~l~~~~~~~i~~~~~~~d~~~w~~~i~GP~~tpY~gg~f~~~i~~p~~YP~~pP~v~F~t-----~i~H-   76 (152)
T PTZ00390          3 ISKRIEKETQNLANDPPPGIKAEPDPGNYRHFKILMEGPDGTPYEGGYYKLELFLPEQYPMEPPKVRFLT-----KIYH-   76 (152)
T ss_pred             HHHHHHHHHHHHHhCCCCCeEEEECCCCccEEEEEEEcCCCCCCcCcEEEEEEECccccCCCCCEEEEec-----CCee-
Confidence            6799999999999999999999999999999999999999999999999999999999999999999999     8888 


Q ss_pred             ccccccCCceeecccccCCCCCCccccCCCeEEeecCCCCCCCCCCCCCHHHHHHHHHHhCCC-CCCChhh--hhHhhHH
Q 020053           92 SYCLCADYGVRTNVCAFFPPQPNGRFETQTKICLSISNHHPEHWQPSWSVRTALVALIAFMPT-NPNGALG--SLDYKKE  168 (332)
Q Consensus        92 ~~~~~~~~~~~~n~~~~~h~~PNv~v~~~G~ICL~iL~~~~e~WsP~~ti~sVL~sI~~lL~~-nP~~~~~--a~~~~~~  168 (332)
                                           ||  |+.+|.||+++|+   +.|+|+++|++||++|++||.+ +|+++++  ++++|++
T Consensus        77 ---------------------PN--V~~~G~iCl~iL~---~~W~p~~ti~~iL~~i~~ll~~P~~~~pln~~aa~~~~~  130 (152)
T PTZ00390         77 ---------------------PN--IDKLGRICLDILK---DKWSPALQIRTVLLSIQALLSAPEPDDPLDTSVADHFKN  130 (152)
T ss_pred             ---------------------ce--ECCCCeEECccCc---ccCCCCCcHHHHHHHHHHHHhCCCCCCchHHHHHHHHHH
Confidence                                 99  6789999999997   8999999999999999999965 6777765  6788899


Q ss_pred             hHHHHHHHHHHHHhhhCCh
Q 020053          169 ERRALAIKSREAAPKFGTP  187 (332)
Q Consensus       169 dr~~y~~kare~~~kya~~  187 (332)
                      |+..|.++||+|+++|+..
T Consensus       131 d~~~f~~~a~~~~~~~a~~  149 (152)
T PTZ00390        131 NRADAEKVAREWNQKYAKH  149 (152)
T ss_pred             CHHHHHHHHHHHHHHHhcc
Confidence            9999999999999999873

>PLN00172 ubiquitin conjugating enzyme; Provisional

Probab=100.00  E-value=3.1e-38  Score=275.12  Aligned_cols=143  Identities=33%  Similarity=0.680  Sum_probs=133.4

Q ss_pred             HHHHHHHHHHHHhhCCCCCeEEecCCCCceEEEEEEeCCCCCCCCCCEEEEEEEcCCCCCCCCCcccccccccccccccc
Q 020053           12 AVKRILQEVKEMQSNPSDDFMSLPLEENIFEWQFAIRGPGDTEFEGGIYHGRIQLPAEYPFKPPSFMLLTVRCCSLMEHK   91 (332)
Q Consensus        12 a~kRL~kEl~~l~~~p~~gi~v~p~ednl~~W~v~I~GP~dTpYeGGiF~l~I~fP~~YP~~PP~V~FlT~~~~~~i~Hp   91 (332)
                      |.+||++|+++|++++++|+.+.+.++|+++|+++|.||++|||+||+|++.|.||++||++||+|+|.|     +||| 
T Consensus         2 a~~Rl~kE~~~l~~~~~~~~~~~~~~~nl~~w~~~i~GP~~tpyegg~f~~~i~fp~~YP~~pP~v~f~t-----~i~H-   75 (147)
T PLN00172          2 ATKRIQKEHKDLLKDPPSNCSAGPSDENLFRWTASIIGPSDSPYAGGVFFLSILFPPDYPFKPPKVQFTT-----KIYH-   75 (147)
T ss_pred             hHHHHHHHHHHHHhCCCCCeEEEECCCChheEEEEEECCCCCCCCCCEEEEEEECCcccCCCCCEEEEec-----Cccc-
Confidence            4689999999999999999999999999999999999999999999999999999999999999999999     8888 


Q ss_pred             ccccccCCceeecccccCCCCCCccccCCCeEEeecCCCCCCCCCCCCCHHHHHHHHHHhCCC-CCCChhh--hhHhhHH
Q 020053           92 SYCLCADYGVRTNVCAFFPPQPNGRFETQTKICLSISNHHPEHWQPSWSVRTALVALIAFMPT-NPNGALG--SLDYKKE  168 (332)
Q Consensus        92 ~~~~~~~~~~~~n~~~~~h~~PNv~v~~~G~ICL~iL~~~~e~WsP~~ti~sVL~sI~~lL~~-nP~~~~~--a~~~~~~  168 (332)
                                           ||  |+.+|.||+++|+   +.|+|+++|++||++|++||.+ +++++++  +++++.+
T Consensus        76 ---------------------PN--v~~~G~iCl~il~---~~W~p~~ti~~il~~i~~ll~~P~~~~p~n~~aa~~~~~  129 (147)
T PLN00172         76 ---------------------PN--INSNGSICLDILR---DQWSPALTVSKVLLSISSLLTDPNPDDPLVPEIARVFKE  129 (147)
T ss_pred             ---------------------ce--ECCCCEEEcccCc---CCCCCcCcHHHHHHHHHHHHhCCCCCCchHHHHHHHHHH
Confidence                                 99  6789999999997   8999999999999999999954 6666665  6788899


Q ss_pred             hHHHHHHHHHHHHhhhCC
Q 020053          169 ERRALAIKSREAAPKFGT  186 (332)
Q Consensus       169 dr~~y~~kare~~~kya~  186 (332)
                      |+++|+++||+|+.+|+.
T Consensus       130 ~~~~f~~~a~~~~~~~a~  147 (147)
T PLN00172        130 NRSRYEATAREWTQRYAT  147 (147)
T ss_pred             CHHHHHHHHHHHHHHhhC
Confidence            999999999999999873

>KOG0419 consensus Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]

Probab=100.00  E-value=1.4e-38  Score=270.77  Aligned_cols=144  Identities=31%  Similarity=0.670  Sum_probs=135.0

Q ss_pred             CChHHHHHHHHHHHHHhhCCCCCeEEecCCCCceEEEEEEeCCCCCCCCCCEEEEEEEcCCCCCCCCCcccccccccccc
Q 020053            8 LKNPAVKRILQEVKEMQSNPSDDFMSLPLEENIFEWQFAIRGPGDTEFEGGIYHGRIQLPAEYPFKPPSFMLLTVRCCSL   87 (332)
Q Consensus         8 m~~~a~kRL~kEl~~l~~~p~~gi~v~p~ednl~~W~v~I~GP~dTpYeGGiF~l~I~fP~~YP~~PP~V~FlT~~~~~~   87 (332)
                      |+.+|.+||++|++.|+++++.|++..|.++|++.|.++|+||.+|||+||+|++.|.|.++||.+||.|+|++     +
T Consensus         1 MstpArrrLmrDfkrlqedpp~gisa~P~~~niM~W~a~I~Gp~~tp~e~gtFkLtl~FteeYpnkPP~VrFvs-----~   75 (152)
T KOG0419|consen    1 MSTPARRRLMRDFKRLQEDPPAGISAAPVENNIMEWNAVIFGPQDTPFEGGTFKLTLEFTEEYPNKPPTVRFVS-----K   75 (152)
T ss_pred             CCchHHHHHHHHHHHhhcCCCCCccCCCCccceeeeeeeEEcCCCCCcCCceEEEEEEcccccCCCCCeeEeee-----e
Confidence            78899999999999999999999999999999999999999999999999999999999999999999999999     9


Q ss_pred             ccccccccccCCceeecccccCCCCCCccccCCCeEEeecCCCCCCCCCCCCCHHHHHHHHHHhCCC-CCCChhh--hhH
Q 020053           88 MEHKSYCLCADYGVRTNVCAFFPPQPNGRFETQTKICLSISNHHPEHWQPSWSVRTALVALIAFMPT-NPNGALG--SLD  164 (332)
Q Consensus        88 i~Hp~~~~~~~~~~~~n~~~~~h~~PNv~v~~~G~ICL~iL~~~~e~WsP~~ti~sVL~sI~~lL~~-nP~~~~~--a~~  164 (332)
                      |||                      ||  +|.+|.|||++|.   ..|+|.|++.+||.+||+||.+ ||+++.+  |++
T Consensus        76 mFH----------------------PN--vya~G~iClDiLq---NrWsp~Ydva~ILtsiQslL~dPn~~sPaN~eAA~  128 (152)
T KOG0419|consen   76 MFH----------------------PN--VYADGSICLDILQ---NRWSPTYDVASILTSIQSLLNDPNPNSPANSEAAR  128 (152)
T ss_pred             ccC----------------------CC--cCCCCcchHHHHh---cCCCCchhHHHHHHHHHHHhcCCCCCCcccHHHHH
Confidence            999                      99  7999999999998   7999999999999999999964 6666655  689


Q ss_pred             hhHHhHHHHHHHHHHHHhh
Q 020053          165 YKKEERRALAIKSREAAPK  183 (332)
Q Consensus       165 ~~~~dr~~y~~kare~~~k  183 (332)
                      ++.++++.|.+++++.+.+
T Consensus       129 Lf~e~~rey~rrVk~~veq  147 (152)
T KOG0419|consen  129 LFSENKREYERRVKETVEQ  147 (152)
T ss_pred             HHhhChHHHHHHHHHHHHH
Confidence            9999999999999987644

>KOG0418 consensus Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]

Probab=100.00  E-value=8.2e-35  Score=260.30  Aligned_cols=159  Identities=31%  Similarity=0.527  Sum_probs=143.5

Q ss_pred             CChHHHHHHHHHHHHHhhCC---CCCeEEecCCCCceEEEEEEeCCCCCCCCCCEEEEEEEcCCCCCCCCCccccccccc
Q 020053            8 LKNPAVKRILQEVKEMQSNP---SDDFMSLPLEENIFEWQFAIRGPGDTEFEGGIYHGRIQLPAEYPFKPPSFMLLTVRC   84 (332)
Q Consensus         8 m~~~a~kRL~kEl~~l~~~p---~~gi~v~p~ednl~~W~v~I~GP~dTpYeGGiF~l~I~fP~~YP~~PP~V~FlT~~~   84 (332)
                      |++ +.+||++|++++.+++   ..||.+...++|+.+..+.|.||+|||||||+|.+.|++|++|||+||+|+|.|   
T Consensus         1 m~~-~~~ri~~e~k~v~~~~eisq~~I~ve~vn~~~~~ikG~I~GP~~TPYEGG~FeldI~iPe~YPF~pPkv~F~T---   76 (200)
T KOG0418|consen    1 MSN-AFKRINREQKEVLDDPEISQAGIIVEMVNENLKEIKGHIAGPEDTPYEGGVFELDIKIPENYPFKPPKVKFIT---   76 (200)
T ss_pred             Ccc-HHHHHHHHHHHhccChhhhhcceEEEEccCChhhceeEecCCCCCCCCCceEEEEEecCCCCCCCCCceeeee---
Confidence            677 9999999999999988   579999999999999999999999999999999999999999999999999999   


Q ss_pred             cccccccccccccCCceeecccccCCCCCCccccCCCeEEeecCCCCCCCCCCCCCHHHHHHHHHHhCCC-CCCChhhh-
Q 020053           85 CSLMEHKSYCLCADYGVRTNVCAFFPPQPNGRFETQTKICLSISNHHPEHWQPSWSVRTALVALIAFMPT-NPNGALGS-  162 (332)
Q Consensus        85 ~~~i~Hp~~~~~~~~~~~~n~~~~~h~~PNv~v~~~G~ICL~iL~~~~e~WsP~~ti~sVL~sI~~lL~~-nP~~~~~a-  162 (332)
                        +|||                      ||| ...+|.||||+|+   +.|.+++|++++|++||++|.. +|.++..+ 
T Consensus        77 --kIwH----------------------PnV-Ss~tGaICLDilk---d~Wa~slTlrtvLislQalL~~pEp~dPqDav  128 (200)
T KOG0418|consen   77 --KIWH----------------------PNV-SSQTGAICLDILK---DQWAASLTLRTVLISLQALLCAPEPKDPQDAV  128 (200)
T ss_pred             --eeec----------------------CCC-Ccccccchhhhhh---cccchhhhHHHHHHHHHHHHcCCCCCChHHHH
Confidence              9999                      998 4788999999998   9999999999999999999964 67766554 


Q ss_pred             -hHhhHHhHHHHHHHHHHHHhhhCCh------hHHHHHHHHHH
Q 020053          163 -LDYKKEERRALAIKSREAAPKFGTP------ERQKLIDEIHE  198 (332)
Q Consensus       163 -~~~~~~dr~~y~~kare~~~kya~~------~~~~l~~e~~~  198 (332)
                       ++.|.++++.|.+.+|.|+..||+.      ...+.++.+.+
T Consensus       129 va~qy~~n~~~F~~TAr~WT~~fA~~~~~~~~~~~~~v~~l~~  171 (200)
T KOG0418|consen  129 VAEQYVDNYEMFYKTARYWTTEFAGGRLPDDPWDKKKVDSLIE  171 (200)
T ss_pred             HHHHHhhhHHHHHHHHHHHHHHHhCCCCCCCchhHHHHHHHHH
Confidence             5666799999999999999999976      44466666665

>KOG0425 consensus Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]

Probab=100.00  E-value=5.4e-34  Score=248.82  Aligned_cols=143  Identities=31%  Similarity=0.639  Sum_probs=128.9

Q ss_pred             HHHHHHHHHHHHHhhCCCCCeEEecCCC-CceEEEEEEeCCCCCCCCCCEEEEEEEcCCCCCCCCCcccccccccccccc
Q 020053           11 PAVKRILQEVKEMQSNPSDDFMSLPLEE-NIFEWQFAIRGPGDTEFEGGIYHGRIQLPAEYPFKPPSFMLLTVRCCSLME   89 (332)
Q Consensus        11 ~a~kRL~kEl~~l~~~p~~gi~v~p~ed-nl~~W~v~I~GP~dTpYeGGiF~l~I~fP~~YP~~PP~V~FlT~~~~~~i~   89 (332)
                      .+..-|+++|++|++++.+||.+..+++ |+++|.+.|.||++|+||||+|+.++.||.+||++||+++|.|     +||
T Consensus         5 ~a~~ll~~qlk~L~~~pv~gf~~glvd~~dif~WeV~i~gppdTlYeGG~FkA~m~FP~dYP~sPP~~rF~s-----~mw   79 (171)
T KOG0425|consen    5 QASLLLLKQLKELQEEPVEGFSVGLVDDSDIFEWEVAIIGPPDTLYEGGFFKAHMKFPQDYPLSPPTFRFTS-----KMW   79 (171)
T ss_pred             hhHHHHHHHHHHHhcCCCCccccccccCCceeEEEEEEEcCCCccccCceeEEEEeCcccCCCCCCceeeeh-----hhc
Confidence            4778899999999999999999988755 9999999999999999999999999999999999999999999     999


Q ss_pred             ccccccccCCceeecccccCCCCCCccccCCCeEEeecCCCCC----------CCCCCCCCHHHHHHHHHHhCCCCCCCh
Q 020053           90 HKSYCLCADYGVRTNVCAFFPPQPNGRFETQTKICLSISNHHP----------EHWQPSWSVRTALVALIAFMPTNPNGA  159 (332)
Q Consensus        90 Hp~~~~~~~~~~~~n~~~~~h~~PNv~v~~~G~ICL~iL~~~~----------e~WsP~~ti~sVL~sI~~lL~~nP~~~  159 (332)
                      |                      ||  ||.+|++|++||....          |.|.|.+|+++||++|++|| ++||+.
T Consensus        80 H----------------------PN--vy~~G~vCISILH~pgdD~~gyE~~~erW~Pv~tvetIllSiIsmL-~~PN~~  134 (171)
T KOG0425|consen   80 H----------------------PN--VYEDGDVCISILHPPGDDPSGYELPSERWLPVQTVETILLSIISML-NSPNDE  134 (171)
T ss_pred             C----------------------CC--cCCCCCEEEEeecCCCCCcccCCChhhccCCccchhHhHHHHHHHH-cCCCCC
Confidence            9                      99  8999999999996332          58999999999999999999 556543


Q ss_pred             hh----hhHhhHHhHHHHHHHHHHHHhh
Q 020053          160 LG----SLDYKKEERRALAIKSREAAPK  183 (332)
Q Consensus       160 ~~----a~~~~~~dr~~y~~kare~~~k  183 (332)
                      .+    |+..+++++++|.+++++++.+
T Consensus       135 SPANVDAa~~~Ren~~EykkkV~r~vr~  162 (171)
T KOG0425|consen  135 SPANVDAAKEWRENPEEYKKKVRRCVRR  162 (171)
T ss_pred             CccchHHHHHHhhCHHHHHHHHHHHHHH
Confidence            32    5677789999999999998876

>KOG0426 consensus Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]

Probab=100.00  E-value=8.8e-34  Score=241.86  Aligned_cols=146  Identities=32%  Similarity=0.703  Sum_probs=133.6

Q ss_pred             CChHHHHHHHHHHHHHhhCCCCCeEEecC-CCCceEEEEEEeCCCCCCCCCCEEEEEEEcCCCCCCCCCccccccccccc
Q 020053            8 LKNPAVKRILQEVKEMQSNPSDDFMSLPL-EENIFEWQFAIRGPGDTEFEGGIYHGRIQLPAEYPFKPPSFMLLTVRCCS   86 (332)
Q Consensus         8 m~~~a~kRL~kEl~~l~~~p~~gi~v~p~-ednl~~W~v~I~GP~dTpYeGGiF~l~I~fP~~YP~~PP~V~FlT~~~~~   86 (332)
                      |+..|+|||++||++|..++++||.+.|. ++|.++|.+.|.||++|+|+||+|..++.||.|||.+||+++|..     
T Consensus         1 m~~~AlkRLm~EykqLt~~~P~GIvAgP~~EdnfF~W~cLI~GP~~T~f~~GvfpA~l~FP~DYPLsPPkm~Ftc-----   75 (165)
T KOG0426|consen    1 MAGTALKRLMAEYKQLTLNPPEGIVAGPINEDNFFEWECLIQGPEDTCFEGGVFPARLSFPLDYPLSPPKMRFTC-----   75 (165)
T ss_pred             CchhHHHHHHHHHHHHccCCCCcceeCCCCccceeeeeeeeeCCCCCcccCCccceeeecCCCCCCCCCceeeec-----
Confidence            56789999999999999999999999997 789999999999999999999999999999999999999999998     


Q ss_pred             cccccccccccCCceeecccccCCCCCCccccCCCeEEeecCCCC----------CCCCCCCCCHHHHHHHHHHhCCCCC
Q 020053           87 LMEHKSYCLCADYGVRTNVCAFFPPQPNGRFETQTKICLSISNHH----------PEHWQPSWSVRTALVALIAFMPTNP  156 (332)
Q Consensus        87 ~i~Hp~~~~~~~~~~~~n~~~~~h~~PNv~v~~~G~ICL~iL~~~----------~e~WsP~~ti~sVL~sI~~lL~~nP  156 (332)
                      .|||                      ||  ++.+|+||++||...          .+.|+|.++++.||+++.++| ..|
T Consensus        76 ~~fH----------------------PN--iy~dG~VCISILHaPGDDP~~YEls~ERWSPVQSvEKILLSV~SML-aEP  130 (165)
T KOG0426|consen   76 EMFH----------------------PN--IYPDGRVCISILHAPGDDPMGYELSAERWSPVQSVEKILLSVVSML-AEP  130 (165)
T ss_pred             cccc----------------------Cc--ccCCCeEEEEEeeCCCCCCccchhhhhcCChHHHHHHHHHHHHHHH-cCC
Confidence            8888                      99  899999999999633          268999999999999999999 556


Q ss_pred             CChhh----hhHhhHHhHHHHHHHHHHHHhh
Q 020053          157 NGALG----SLDYKKEERRALAIKSREAAPK  183 (332)
Q Consensus       157 ~~~~~----a~~~~~~dr~~y~~kare~~~k  183 (332)
                      |+..+    |..++++||.+|.+.++..+.|
T Consensus       131 NdESgANvdA~~mWRe~R~ef~~i~~~lvrK  161 (165)
T KOG0426|consen  131 NDESGANVDACKMWREDREEFEKIAKRLVRK  161 (165)
T ss_pred             CcccCcccHHHHHHHHhHHHHHHHHHHHHHH
Confidence            66554    5788999999999999998876

>KOG0424 consensus Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]

Probab=100.00  E-value=2.7e-33  Score=241.44  Aligned_cols=149  Identities=24%  Similarity=0.523  Sum_probs=133.4

Q ss_pred             CChHHHHHHHHHHHHHhhCCCCCeEEecCC-----CCceEEEEEEeCCCCCCCCCCEEEEEEEcCCCCCCCCCccccccc
Q 020053            8 LKNPAVKRILQEVKEMQSNPSDDFMSLPLE-----ENIFEWQFAIRGPGDTEFEGGIYHGRIQLPAEYPFKPPSFMLLTV   82 (332)
Q Consensus         8 m~~~a~kRL~kEl~~l~~~p~~gi~v~p~e-----dnl~~W~v~I~GP~dTpYeGGiF~l~I~fP~~YP~~PP~V~FlT~   82 (332)
                      |+..++.||+.|-+.|.++.+-||++.|..     .|++.|+|.|.||.+|+||||.|.+++.||++||++||+++|.+ 
T Consensus         1 ~s~~~~~rl~eErk~wrk~hp~gf~AkP~~~~dg~~nl~~Wec~IPG~~~t~wEGg~y~l~v~F~~dyP~~PPkckF~~-   79 (158)
T KOG0424|consen    1 MSGIALNRLAEERKKWRKDHPFGFYAKPVKNADGTLNLMNWECGIPGKKGTPWEGGLYKLTVNFPDDYPSSPPKCKFKP-   79 (158)
T ss_pred             CcchHHHHHHHHHHHHhhcCCCceeeeccCCCCCcceeEEEEeecCCCCCCcCcCceEEEEEeCCccCCCCCCccccCC-
Confidence            567789999999999999999999999972     48999999999999999999999999999999999999999999 


Q ss_pred             cccccccccccccccCCceeecccccCCCCCCccccCCCeEEeecCCCCCCCCCCCCCHHHHHHHHHHhCCC-CCCChhh
Q 020053           83 RCCSLMEHKSYCLCADYGVRTNVCAFFPPQPNGRFETQTKICLSISNHHPEHWQPSWSVRTALVALIAFMPT-NPNGALG  161 (332)
Q Consensus        83 ~~~~~i~Hp~~~~~~~~~~~~n~~~~~h~~PNv~v~~~G~ICL~iL~~~~e~WsP~~ti~sVL~sI~~lL~~-nP~~~~~  161 (332)
                          ++||                      ||  ||.+|.|||+||+.. .+|+|++||.+||+.||.||.+ |+.++..
T Consensus        80 ----pl~H----------------------PN--VypsgtVcLsiL~e~-~~W~paitikqiL~gIqdLL~~Pn~~~pAq  130 (158)
T KOG0424|consen   80 ----PLFH----------------------PN--VYPSGTVCLSILNEE-KDWRPAITIKQILLGIQDLLDTPNITSPAQ  130 (158)
T ss_pred             ----CCcC----------------------CC--cCCCCcEehhhhccc-cCCCchhhHHHHHHHHHHHhcCCCCCCchh
Confidence                7777                      99  799999999999832 3599999999999999999954 4445433


Q ss_pred             --hhHhhHHhHHHHHHHHHHHHhhhCC
Q 020053          162 --SLDYKKEERRALAIKSREAAPKFGT  186 (332)
Q Consensus       162 --a~~~~~~dr~~y~~kare~~~kya~  186 (332)
                        |...+.+||..|++++|..+++|+.
T Consensus       131 ~eA~~~~~~~r~eYekrvr~qak~~a~  157 (158)
T KOG0424|consen  131 TEAYTIYCQDRAEYEKRVRAQAKEYAK  157 (158)
T ss_pred             hHHHHHHhhCHHHHHHHHHHHHHHhcc
Confidence              5677789999999999999999874

>PF00179 UQ_con: Ubiquitin-conjugating enzyme; InterPro: IPR000608 The post-translational attachment of ubiquitin (IPR000626 from INTERPRO) to proteins (ubiquitinylation) alters the function, location or trafficking of a protein, or targets it to the 26S proteasome for degradation [, , ]

Probab=100.00  E-value=1.3e-33  Score=241.58  Aligned_cols=136  Identities=40%  Similarity=0.813  Sum_probs=118.7

Q ss_pred             HHHHHHHHHhhCCCCCeEEecCCC-CceEEEEEEeCCCCCCCCCCEEEEEEEcCCCCCCCCCcccccccccccccccccc
Q 020053           15 RILQEVKEMQSNPSDDFMSLPLEE-NIFEWQFAIRGPGDTEFEGGIYHGRIQLPAEYPFKPPSFMLLTVRCCSLMEHKSY   93 (332)
Q Consensus        15 RL~kEl~~l~~~p~~gi~v~p~ed-nl~~W~v~I~GP~dTpYeGGiF~l~I~fP~~YP~~PP~V~FlT~~~~~~i~Hp~~   93 (332)
                      ||++|+++|+++++.|+.+.+.++ |+++|+++|.||.+|||+||+|+++|.||++||++||+|+|.|     +|||   
T Consensus         1 Rl~~E~~~l~~~~~~~~~~~~~~~~~~~~w~~~i~gp~~t~y~gg~f~~~i~~p~~YP~~pP~v~f~t-----~i~H---   72 (140)
T PF00179_consen    1 RLQKELKELQKNPPPGISVQPSEDDNLFEWHVTIFGPPGTPYEGGIFKFRISFPPDYPFSPPKVRFLT-----PIFH---   72 (140)
T ss_dssp             HHHHHHHHHHHSHTTTEEEEEESTTETTEEEEEEEBETTSTTTTSEEEEEEEETTTTTTS--EEEESS-----S-SB---
T ss_pred             CHHHHHHHHhhCCCCCEEEEECCCCChheEEEEEeccCccceeccccccccccccccccccccccccc-----cccc---
Confidence            899999999999999999999986 9999999999999999999999999999999999999999999     8888   


Q ss_pred             ccccCCceeecccccCCCCCCccccCCCeEEeecCCCCCCCCCCCCCHHHHHHHHHHhCCC-CCCChhh--hhHhhHHhH
Q 020053           94 CLCADYGVRTNVCAFFPPQPNGRFETQTKICLSISNHHPEHWQPSWSVRTALVALIAFMPT-NPNGALG--SLDYKKEER  170 (332)
Q Consensus        94 ~~~~~~~~~~n~~~~~h~~PNv~v~~~G~ICL~iL~~~~e~WsP~~ti~sVL~sI~~lL~~-nP~~~~~--a~~~~~~dr  170 (332)
                                         ||  |+.+|.||+++|.  .+.|+|.++|++||.+|+++|.+ +++++.+  ++..+++|+
T Consensus        73 -------------------Pn--i~~~G~icl~~l~--~~~W~p~~~i~~il~~i~~ll~~p~~~~~~n~~a~~~~~~~~  129 (140)
T PF00179_consen   73 -------------------PN--IDENGRICLDILN--PESWSPSYTIESILLSIQSLLSEPNPEDPLNEEAAELYKNDR  129 (140)
T ss_dssp             -------------------TT--B-TTSBBGHGGGT--TTTC-TTSHHHHHHHHHHHHHHSTCTTSTSSHHHHHHHHHCH
T ss_pred             -------------------cc--ccccccchhhhhh--cccCCcccccccHHHHHHHHHhCCCCCCcchHHHHHHHHHCH
Confidence                               99  6799999999997  34699999999999999999943 4444444  567888999


Q ss_pred             HHHHHHHHHHH
Q 020053          171 RALAIKSREAA  181 (332)
Q Consensus       171 ~~y~~kare~~  181 (332)
                      +.|.++||+|.
T Consensus       130 ~~f~~~~~~~~  140 (140)
T PF00179_consen  130 EEFEKKAREWA  140 (140)
T ss_dssp             HHHHHHHHHH-
T ss_pred             HHHHHHHHHcC
Confidence            99999999873

Ubiquitinylation is an ATP-dependent process that involves the action of at least three enzymes: a ubiquitin-activating enzyme (E1, IPR000011 from INTERPRO), a ubiquitin-conjugating enzyme (E2), and a ubiquitin ligase (E3, IPR000569 from INTERPRO, IPR003613 from INTERPRO), which work sequentially in a cascade []. The E1 enzyme mediates an ATP-dependent transfer of a thioester-linked ubiquitin molecule to a cysteine residue on the E2 enzyme. The E2 enzyme (6.3.2.19 from EC) then either transfers the ubiquitin moiety directly to a substrate, or to an E3 ligase, which can also ubiquitinylate a substrate. There are several different E2 enzymes (over 30 in humans), which are broadly grouped into four classes, all of which have a core catalytic domain (containing the active site cysteine), and some of which have short N- and C-terminal amino acid extensions: class I enzymes consist of just the catalytic core domain (UBC), class II possess a UBC and a C-terminal extension, class III possess a UBC and an N-terminal extension, and class IV possess a UBC and both N- and C-terminal extensions. These extensions appear to be important for some subfamily function, including E2 localisation and protein-protein interactions []. In addition, there are proteins with an E2-like fold that are devoid of catalytic activity, but which appear to assist in poly-ubiquitin chain formation.; GO: 0016881 acid-amino acid ligase activity; PDB: 2AAK_A 3SY2_C 1FBV_C 3SQV_C 1C4Z_D 1JAT_B 2GMI_B 2H2Y_D 2R0J_A 3E95_B ....

>KOG0894 consensus Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]

Probab=100.00  E-value=5.7e-33  Score=253.03  Aligned_cols=156  Identities=41%  Similarity=0.847  Sum_probs=139.7

Q ss_pred             ChHHHHHHHHHHHHHhhCCCCCeEEecCCCCceEEEEEEeCCCCCCCCCCEEEEEEEcCCCCCCCCCccccccccccccc
Q 020053            9 KNPAVKRILQEVKEMQSNPSDDFMSLPLEENIFEWQFAIRGPGDTEFEGGIYHGRIQLPAEYPFKPPSFMLLTVRCCSLM   88 (332)
Q Consensus         9 ~~~a~kRL~kEl~~l~~~p~~gi~v~p~ednl~~W~v~I~GP~dTpYeGGiF~l~I~fP~~YP~~PP~V~FlT~~~~~~i   88 (332)
                      +..|.|||+|||+.|+++|.+++.+.|.++|+++||.+|.||+||||+||.|+.+|.||.+||++||.|+++|       
T Consensus         3 ~k~a~kRl~keY~~l~k~Pv~~i~A~P~p~nILEWHYvl~GpedTPy~GG~YhGkl~FP~eyP~KPPaI~MiT-------   75 (244)
T KOG0894|consen    3 SKAAVKRLQKEYRALCKDPVPYIVARPNPNNILEWHYVLRGPEDTPYYGGYYHGKLIFPPEYPFKPPAITMIT-------   75 (244)
T ss_pred             chHHHHHHHHHHHHHHhCCchhhccCCCccceeeeEEEeeCCCCCCccCceeeeEEeCCCCCCCCCCeeEEEC-------
Confidence            4579999999999999999999999999999999999999999999999999999999999999999999999       


Q ss_pred             cccccccccCCceeecccccCCCCCCccccCCCeEEeecCCCCCCCCCCCCCHHHHHHHHHHhCCCCCCChhhhhHhhHH
Q 020053           89 EHKSYCLCADYGVRTNVCAFFPPQPNGRFETQTKICLSISNHHPEHWQPSWSVRTALVALIAFMPTNPNGALGSLDYKKE  168 (332)
Q Consensus        89 ~Hp~~~~~~~~~~~~n~~~~~h~~PNv~v~~~G~ICL~iL~~~~e~WsP~~ti~sVL~sI~~lL~~nP~~~~~a~~~~~~  168 (332)
                                              |||||-.+.++||++.++|++.|+|.|+|.+||..|.++|.++ ....++.+-...
T Consensus        76 ------------------------PNGRFktntRLCLSiSDfHPdsWNP~WsVStILtGLlSFM~e~-~pTtGSI~tS~~  130 (244)
T KOG0894|consen   76 ------------------------PNGRFKTNTRLCLSISDFHPDSWNPGWSVSTILTGLLSFMTED-SPTTGSIETSDQ  130 (244)
T ss_pred             ------------------------CCCceecCceEEEeccccCcCcCCCcccHHHHHHHHHHHHhcC-CCccCcccccHH
Confidence                                    9999999999999999999999999999999999999999654 334566666678


Q ss_pred             hHHHHHHHHHHHHhhhCChhHHHHHHHHHH
Q 020053          169 ERRALAIKSREAAPKFGTPERQKLIDEIHE  198 (332)
Q Consensus       169 dr~~y~~kare~~~kya~~~~~~l~~e~~~  198 (332)
                      +++.|++.+..+-  +-.+...++.-|+.+
T Consensus       131 ~kr~lA~~SlaFN--~kn~~F~~lFPE~Ve  158 (244)
T KOG0894|consen  131 DKRMLAKSSLAFN--LKNPKFCELFPEVVE  158 (244)
T ss_pred             HHHHHHHhhhhhc--cCChHHHHHhHHHHH
Confidence            8999999998876  345555566655554

>cd00195 UBCc Ubiquitin-conjugating enzyme E2, catalytic (UBCc) domain

Probab=100.00  E-value=1.3e-32  Score=235.91  Aligned_cols=137  Identities=39%  Similarity=0.793  Sum_probs=124.2

Q ss_pred             HHHHHHHHHHhhCCCCCeEEecCCCCceEEEEEEeCCCCCCCCCCEEEEEEEcCCCCCCCCCcccccccccccccccccc
Q 020053           14 KRILQEVKEMQSNPSDDFMSLPLEENIFEWQFAIRGPGDTEFEGGIYHGRIQLPAEYPFKPPSFMLLTVRCCSLMEHKSY   93 (332)
Q Consensus        14 kRL~kEl~~l~~~p~~gi~v~p~ednl~~W~v~I~GP~dTpYeGGiF~l~I~fP~~YP~~PP~V~FlT~~~~~~i~Hp~~   93 (332)
                      |||++|+++|+++++.|+.+.+.++|+++|+++|.||++|||+||+|++.|.||++||++||+|+|.|     ++||   
T Consensus         2 ~Rl~~E~~~l~~~~~~~~~v~~~~~~~~~w~~~i~g~~~t~y~g~~~~~~~~~p~~yP~~pP~v~f~~-----~i~H---   73 (141)
T cd00195           2 KRLQKELKDLKKDPPSGISAEPVEENLLEWHGTIRGPPDTPYEGGIFKLDIEFPEDYPFKPPKVRFVT-----KIYH---   73 (141)
T ss_pred             chHHHHHHHHHhCCCCCeEEEECCCChhEEEEEEecCCCCCccCCEEEEEEECCCccCCCCCeEEEeC-----Cccc---
Confidence            79999999999999999999999999999999999999999999999999999999999999999999     8888   


Q ss_pred             ccccCCceeecccccCCCCCCccccCCCeEEeecCCCCCCCCCCCCCHHHHHHHHHHhCCC-CCCChhh--hhHhhHHhH
Q 020053           94 CLCADYGVRTNVCAFFPPQPNGRFETQTKICLSISNHHPEHWQPSWSVRTALVALIAFMPT-NPNGALG--SLDYKKEER  170 (332)
Q Consensus        94 ~~~~~~~~~~n~~~~~h~~PNv~v~~~G~ICL~iL~~~~e~WsP~~ti~sVL~sI~~lL~~-nP~~~~~--a~~~~~~dr  170 (332)
                                         ||  |+.+|.||+++|..  +.|+|+++|++||.+|+++|.+ +++++.+  |+.++++|+
T Consensus        74 -------------------pn--V~~~G~icl~~l~~--~~W~p~~~l~~il~~i~~~l~~p~~~~~~n~~aa~~~~~~~  130 (141)
T cd00195          74 -------------------PN--VDENGKICLSILKT--HGWSPAYTLRTVLLSLQSLLNEPNPSDPLNAEAAKLYKENR  130 (141)
T ss_pred             -------------------CC--CCCCCCCchhhcCC--CCcCCcCcHHHHHHHHHHHHhCCCCCCchhHHHHHHHHHCH
Confidence                               99  67999999999982  2499999999999999999963 3344443  677788999


Q ss_pred             HHHHHHHHHHH
Q 020053          171 RALAIKSREAA  181 (332)
Q Consensus       171 ~~y~~kare~~  181 (332)
                      +.|.+++++|+
T Consensus       131 ~~f~~~~~~~~  141 (141)
T cd00195         131 EEFKKKAREWT  141 (141)
T ss_pred             HHHHHHHHHhC
Confidence            99999999874

This is part of the ubiquitin-mediated protein degradation pathway in which a thiol-ester linkage forms between a conserved cysteine and the C-terminus of ubiquitin and complexes with ubiquitin protein ligase enzymes, E3. This pathway regulates many fundamental cellular processes. There are also other E2s which form thiol-ester linkages without the use of E3s as well as several UBC homologs (TSG101, Mms2, Croc-1 and similar proteins) which lack the active site cysteine essential for ubiquitination and appear to function in DNA repair pathways which were omitted from the scope of this CD.

>smart00212 UBCc Ubiquitin-conjugating enzyme E2, catalytic domain homologues

Probab=99.97  E-value=1.1e-31  Score=231.12  Aligned_cols=141  Identities=35%  Similarity=0.749  Sum_probs=127.8

Q ss_pred             HHHHHHHHHHhhCCCCCeEEecCCC-CceEEEEEEeCCCCCCCCCCEEEEEEEcCCCCCCCCCccccccccccccccccc
Q 020053           14 KRILQEVKEMQSNPSDDFMSLPLEE-NIFEWQFAIRGPGDTEFEGGIYHGRIQLPAEYPFKPPSFMLLTVRCCSLMEHKS   92 (332)
Q Consensus        14 kRL~kEl~~l~~~p~~gi~v~p~ed-nl~~W~v~I~GP~dTpYeGGiF~l~I~fP~~YP~~PP~V~FlT~~~~~~i~Hp~   92 (332)
                      +||++|+++|+++++.|+.+.+.++ |+++|+++|.||++|||+||+|++.|.||++||++||+|+|.+     ++||  
T Consensus         1 ~Rl~~E~~~~~~~~~~~~~v~~~~~~~~~~w~~~i~gp~~~~y~g~~f~~~l~~p~~yP~~pP~v~f~~-----~i~H--   73 (145)
T smart00212        1 KRLLKELKELLKDPPPGISAYPVDEDNLLEWTGTIVGPPGTPYEGGIFKLTIEFPPDYPFKPPKVKFIT-----KIYH--   73 (145)
T ss_pred             ChHHHHHHHHHhCCCCCeEEEECCCCChheEEEEEEcCCCCCcCCcEEEEEEECCcccCCCCCEEEEeC-----CceE--
Confidence            5999999999999999999998875 9999999999999999999999999999999999999999999     8888  


Q ss_pred             cccccCCceeecccccCCCCCCccccCCCeEEeecCCCCCCCCCCCCCHHHHHHHHHHhCCC-CCCChhh--hhHhhHHh
Q 020053           93 YCLCADYGVRTNVCAFFPPQPNGRFETQTKICLSISNHHPEHWQPSWSVRTALVALIAFMPT-NPNGALG--SLDYKKEE  169 (332)
Q Consensus        93 ~~~~~~~~~~~n~~~~~h~~PNv~v~~~G~ICL~iL~~~~e~WsP~~ti~sVL~sI~~lL~~-nP~~~~~--a~~~~~~d  169 (332)
                                          ||  |+.+|.||+++|.  .++|+|.+++++||.+|+++|.+ +++++.+  |+.++.++
T Consensus        74 --------------------p~--i~~~G~icl~~l~--~~~W~p~~~l~~il~~i~~~l~~p~~~~~~n~eaa~~~~~~  129 (145)
T smart00212       74 --------------------PN--VDSSGEICLDILK--QEKWSPATTLETVLLSIQSLLSEPNPDSPLNADAATLYKKN  129 (145)
T ss_pred             --------------------ee--ECCCCCEehhhcC--CCCCCCCCcHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHC
Confidence                                99  6789999999996  36899999999999999999964 4445444  67788899


Q ss_pred             HHHHHHHHHHHHhhhC
Q 020053          170 RRALAIKSREAAPKFG  185 (332)
Q Consensus       170 r~~y~~kare~~~kya  185 (332)
                      ++.|++++++++.||.
T Consensus       130 ~~~f~~~~~~~~~k~~  145 (145)
T smart00212      130 REEFKKKAREWTKKYA  145 (145)
T ss_pred             HHHHHHHHHHHHHHhC
Confidence            9999999999999874

Proteins destined for proteasome-mediated degradation may be ubiquitinated. Ubiquitination follows conjugation of ubiquitin to a conserved cysteine residue of UBC homologues. This pathway functions in regulating many fundamental processes required for cell viability.TSG101 is one of several UBC homologues that lacks this active site cysteine.

>KOG0421 consensus Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]

Probab=99.97  E-value=6.4e-32  Score=233.24  Aligned_cols=139  Identities=27%  Similarity=0.560  Sum_probs=126.4

Q ss_pred             ChHHHHHHHHHHHHHhhCCCCCeEEecCCCCceEEEEEEeCCCCCCCCCCEEEEEEEcCCCCCCCCCccccccccccccc
Q 020053            9 KNPAVKRILQEVKEMQSNPSDDFMSLPLEENIFEWQFAIRGPGDTEFEGGIYHGRIQLPAEYPFKPPSFMLLTVRCCSLM   88 (332)
Q Consensus         9 ~~~a~kRL~kEl~~l~~~p~~gi~v~p~ednl~~W~v~I~GP~dTpYeGGiF~l~I~fP~~YP~~PP~V~FlT~~~~~~i   88 (332)
                      .....|||++||..|.....+||+++|.++|++.|..+|.||.+|+|||-.|++.+.||.+||++||.|+|+|     ++
T Consensus        27 ~~~V~KRLq~ELm~Lmms~~~gISAFP~~dnlf~WvGtItGp~dTvyegl~yklSl~Fp~~YPy~pP~vkFlt-----pc  101 (175)
T KOG0421|consen   27 GHSVTKRLQSELMGLMMSNTPGISAFPESDNLFKWVGTITGPKDTVYEGLKYKLSLSFPNNYPYKPPTVKFLT-----PC  101 (175)
T ss_pred             CchHHHHHHHHHHHHHhcCCCCcccCcCcCceeEEeeEeeCCCCccccCcEEEEEEecCCCCCCCCCeeEeec-----cc
Confidence            3457899999999999999999999999999999999999999999999999999999999999999999999     89


Q ss_pred             cccccccccCCceeecccccCCCCCCccccCCCeEEeecCCCCCCCCCCCCCHHHHHHHHHHhCCCCCCC--hhh--hhH
Q 020053           89 EHKSYCLCADYGVRTNVCAFFPPQPNGRFETQTKICLSISNHHPEHWQPSWSVRTALVALIAFMPTNPNG--ALG--SLD  164 (332)
Q Consensus        89 ~Hp~~~~~~~~~~~~n~~~~~h~~PNv~v~~~G~ICL~iL~~~~e~WsP~~ti~sVL~sI~~lL~~nP~~--~~~--a~~  164 (332)
                      ||                      ||  |+..|.|||+||+   +.|+..++|++||++||+|| -.||+  +++  |++
T Consensus       102 ~H----------------------PN--VD~~GnIcLDILk---dKWSa~YdVrTILLSiQSLL-GEPNn~SPLNaqAAe  153 (175)
T KOG0421|consen  102 FH----------------------PN--VDLSGNICLDILK---DKWSAVYDVRTILLSIQSLL-GEPNNSSPLNAQAAE  153 (175)
T ss_pred             cC----------------------CC--ccccccchHHHHH---HHHHHHHhHHHHHHHHHHHh-CCCCCCCcchhHHHH
Confidence            99                      99  6889999999998   99999999999999999999 55554  455  678


Q ss_pred             hhHHhHHHHHHHHHHHH
Q 020053          165 YKKEERRALAIKSREAA  181 (332)
Q Consensus       165 ~~~~dr~~y~~kare~~  181 (332)
                      ++. |.++|++...+..
T Consensus       154 lW~-d~~eykk~l~~~Y  169 (175)
T KOG0421|consen  154 LWS-DQEEYKKYLEALY  169 (175)
T ss_pred             Hhc-CHHHHHHHHHHHh
Confidence            884 9999998776543

>KOG0422 consensus Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]

Probab=99.96  E-value=1.6e-28  Score=211.09  Aligned_cols=145  Identities=27%  Similarity=0.529  Sum_probs=128.6

Q ss_pred             HHHHHHHHHHHHhhCCCCCeEE-ecCCCCceEEEEEEeCCCCCCCCCCEEEEEEEcCCCCCCCCCccccccccccccccc
Q 020053           12 AVKRILQEVKEMQSNPSDDFMS-LPLEENIFEWQFAIRGPGDTEFEGGIYHGRIQLPAEYPFKPPSFMLLTVRCCSLMEH   90 (332)
Q Consensus        12 a~kRL~kEl~~l~~~p~~gi~v-~p~ednl~~W~v~I~GP~dTpYeGGiF~l~I~fP~~YP~~PP~V~FlT~~~~~~i~H   90 (332)
                      +.+||+|||.+|+++....+.- ...+.|++.|++.|. |++-||..|.|+++|.||.+|||+||++.|.|     +|||
T Consensus         3 a~~Rl~kEL~dl~~~~~~~~rn~~~~e~nll~wt~lli-pd~ppY~kgaF~l~I~fp~eYPFKPP~i~f~t-----kiYH   76 (153)
T KOG0422|consen    3 APRRLRKELADLQKNKMKFFRNIEVDEANLLKWTGLLI-PDKPPYNKGAFRLEIDFPVEYPFKPPKIKFKT-----KIYH   76 (153)
T ss_pred             hhHHHHHHHHHHHhccHHHHhhhhcccccceeEEeEec-CCCCCccCcceEEEeeCCCCCCCCCCeeeeee-----eecc
Confidence            7899999999999998775543 334779999999999 89999999999999999999999999999999     8888


Q ss_pred             cccccccCCceeecccccCCCCCCccccCCCeEEeecCCCCCCCCCCCCCHHHHHHHHHHhCCC-CCCChhh--hhHhhH
Q 020053           91 KSYCLCADYGVRTNVCAFFPPQPNGRFETQTKICLSISNHHPEHWQPSWSVRTALVALIAFMPT-NPNGALG--SLDYKK  167 (332)
Q Consensus        91 p~~~~~~~~~~~~n~~~~~h~~PNv~v~~~G~ICL~iL~~~~e~WsP~~ti~sVL~sI~~lL~~-nP~~~~~--a~~~~~  167 (332)
                                            ||  |+..|.||+.|+.  .|+|.|++++++||.+|..++.+ +|..++.  .++.|.
T Consensus        77 ----------------------pN--VDe~gqvClPiis--~EnWkP~T~teqVlqaLi~liN~P~pe~plr~dlA~ey~  130 (153)
T KOG0422|consen   77 ----------------------PN--VDEKGQVCLPIIS--AENWKPATRTEQVLQALIALINDPEPEHPLRIDLAEEYI  130 (153)
T ss_pred             ----------------------CC--CCCCCceeeeeee--cccccCcccHHHHHHHHHHHhcCCCccccchhhHHHHHH
Confidence                                  99  6788999999998  59999999999999999999954 5556655  467778


Q ss_pred             HhHHHHHHHHHHHHhhhCChh
Q 020053          168 EERRALAIKSREAAPKFGTPE  188 (332)
Q Consensus       168 ~dr~~y~~kare~~~kya~~~  188 (332)
                      +|+..|.++|.++++||+.+.
T Consensus       131 ~d~~kF~K~Aee~tkK~~e~r  151 (153)
T KOG0422|consen  131 KDPKKFVKNAEEFTKKYSEKR  151 (153)
T ss_pred             HCHHHHHHhHHHHHHHhcCcC
Confidence            999999999999999998653

>KOG0416 consensus Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]

Probab=99.95  E-value=2.9e-28  Score=215.45  Aligned_cols=144  Identities=26%  Similarity=0.553  Sum_probs=128.4

Q ss_pred             HHHHHHHHHHHHhhCCCCCeEEecCCCCceEEEEEEeCCCCCCCCCCEEEEEEEcCCCCCCCCCcccccccccccccccc
Q 020053           12 AVKRILQEVKEMQSNPSDDFMSLPLEENIFEWQFAIRGPGDTEFEGGIYHGRIQLPAEYPFKPPSFMLLTVRCCSLMEHK   91 (332)
Q Consensus        12 a~kRL~kEl~~l~~~p~~gi~v~p~ednl~~W~v~I~GP~dTpYeGGiF~l~I~fP~~YP~~PP~V~FlT~~~~~~i~Hp   91 (332)
                      .-|||..|+..|...   +..+...++++.+++|.+.||.+||||||+|+++|.+|++||++.|+|.|.|     +||| 
T Consensus         4 ~~rRid~Dv~KL~~s---~yeV~~ind~m~ef~V~f~GP~ds~YegGvWkv~V~lPd~YP~KSPSIGFvn-----KIfH-   74 (189)
T KOG0416|consen    4 GKRRIDTDVMKLLMS---DYEVTIINDGMQEFYVKFHGPKDSPYEGGVWKVRVELPDNYPFKSPSIGFVN-----KIFH-   74 (189)
T ss_pred             cccchhhHHHHHHhc---CCeEEEecCcccEEEEEeeCCCCCcccCceEEEEEECCCCCCCCCCccccee-----eccC-
Confidence            568999999999875   3467777888999999999999999999999999999999999999999999     9999 


Q ss_pred             ccccccCCceeecccccCCCCCCccccCCCeEEeecCCCCCCCCCCCCCHHHHHHHHHHhCCC--CCCChhh--hhHhhH
Q 020053           92 SYCLCADYGVRTNVCAFFPPQPNGRFETQTKICLSISNHHPEHWQPSWSVRTALVALIAFMPT--NPNGALG--SLDYKK  167 (332)
Q Consensus        92 ~~~~~~~~~~~~n~~~~~h~~PNv~v~~~G~ICL~iL~~~~e~WsP~~ti~sVL~sI~~lL~~--nP~~~~~--a~~~~~  167 (332)
                                           |||+ ..+|.|||++++   ..|+|.+.+..|+..+.-.|..  ||.++++  |+.++.
T Consensus        75 ---------------------PNID-e~SGsVCLDViN---QtWSp~yDL~NIfetfLPQLL~YPNp~DPLN~eAAal~l  129 (189)
T KOG0416|consen   75 ---------------------PNID-EASGSVCLDVIN---QTWSPLYDLVNIFETFLPQLLRYPNPSDPLNGEAAALYL  129 (189)
T ss_pred             ---------------------CCch-hccCccHHHHHh---hhhhHHHHHHHHHHHHhHHHhcCCCCCCCcccHHHHHHh
Confidence                                 9986 778999999998   8999999999999887665544  6677776  677888


Q ss_pred             HhHHHHHHHHHHHHhhhCChhH
Q 020053          168 EERRALAIKSREAAPKFGTPER  189 (332)
Q Consensus       168 ~dr~~y~~kare~~~kya~~~~  189 (332)
                      ++++.|++++|++++|||++..
T Consensus       130 ~~~~~Y~~~v~eY~~kYA~~~~  151 (189)
T KOG0416|consen  130 RDPEEYEEKVKEYIKKYATPEA  151 (189)
T ss_pred             cCHHHHHHHHHHHHHHhcChhh
Confidence            9999999999999999999874

>KOG0423 consensus Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]

Probab=99.95  E-value=4.8e-28  Score=214.73  Aligned_cols=153  Identities=28%  Similarity=0.526  Sum_probs=141.5

Q ss_pred             CCcccCCCChHHHHHHHHHHHHHhhCCCCCeEEecCCCCceEEEEEEeCCCCCCCCCCEEEEEEEcCCCCCCCCCccccc
Q 020053            1 MAEDRYNLKNPAVKRILQEVKEMQSNPSDDFMSLPLEENIFEWQFAIRGPGDTEFEGGIYHGRIQLPAEYPFKPPSFMLL   80 (332)
Q Consensus         1 ma~~~~~m~~~a~kRL~kEl~~l~~~p~~gi~v~p~ednl~~W~v~I~GP~dTpYeGGiF~l~I~fP~~YP~~PP~V~Fl   80 (332)
                      || ...|+..-.+|.|.+|++.|...|++||.+.+.++|+...++.|.||.+|||++|+|+..+.+..|||.+||+-.|+
T Consensus         1 m~-snenlpp~vik~~~kEl~~l~~~PPdGIKV~~NeeD~tdiqa~IeGP~GTPYa~GlFRmKL~L~kDFP~sPPKgYFl   79 (223)
T KOG0423|consen    1 MA-SNENLPPNVIKQLAKELKSLDESPPDGIKVVVNEEDFTDIQADIEGPVGTPYANGLFRMKLALSKDFPHSPPKGYFL   79 (223)
T ss_pred             CC-cccCCChHHHHHHHHHHHhcccCCCCceEEecChHHhHHHHhhccCCCCCccccceeeehhhhcCCCCCCCCcceee
Confidence            66 45899999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cccccccccccccccccCCceeecccccCCCCCCccccCCCeEEeecCCCCCCCCCCCCCHHHHHHHHHHhCCC-CCCCh
Q 020053           81 TVRCCSLMEHKSYCLCADYGVRTNVCAFFPPQPNGRFETQTKICLSISNHHPEHWQPSWSVRTALVALIAFMPT-NPNGA  159 (332)
Q Consensus        81 T~~~~~~i~Hp~~~~~~~~~~~~n~~~~~h~~PNv~v~~~G~ICL~iL~~~~e~WsP~~ti~sVL~sI~~lL~~-nP~~~  159 (332)
                      |     +|||                      ||  +..+|.||++.|.   .+|+|.+.|+.||+.|.+||.. ||..+
T Consensus        80 T-----KIFH----------------------PN--VaaNGEICVNtLK---kDW~p~LGirHvLltikCLLI~PnPESA  127 (223)
T KOG0423|consen   80 T-----KIFH----------------------PN--VAANGEICVNTLK---KDWNPSLGIRHVLLTIKCLLIEPNPESA  127 (223)
T ss_pred             e-----eecc----------------------CC--cccCceehhhhhh---cccCcccchhhHhhhhheeeecCChHHH
Confidence            9     9999                      99  7899999999998   8999999999999999999875 88887


Q ss_pred             hh--hhHhhHHhHHHHHHHHHHHHhhhCChhHHHHHHHHHHH
Q 020053          160 LG--SLDYKKEERRALAIKSREAAPKFGTPERQKLIDEIHEY  199 (332)
Q Consensus       160 ~~--a~~~~~~dr~~y~~kare~~~kya~~~~~~l~~e~~~~  199 (332)
                      ++  |-.+..++++.|.+++             .+++|||+.
T Consensus       128 LNEeAGkmLLEnYdeYa~rA-------------Rl~TeIHa~  156 (223)
T KOG0423|consen  128 LNEEAGKMLLENYDEYARRA-------------RLYTEIHAK  156 (223)
T ss_pred             HhHHHHHHHHHhHHHHHHHH-------------HHHHHhhcC
Confidence            77  4566679999999888             678899984

>KOG0420 consensus Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]

Probab=99.93  E-value=4.4e-26  Score=201.85  Aligned_cols=143  Identities=24%  Similarity=0.476  Sum_probs=122.7

Q ss_pred             ChHHHHHHHHHHHHHhhCCCCCeEE-e---cCCCCceEEEEEEeCCCCCCCCCCEEEEEEEcCCCCCCCCCccccccccc
Q 020053            9 KNPAVKRILQEVKEMQSNPSDDFMS-L---PLEENIFEWQFAIRGPGDTEFEGGIYHGRIQLPAEYPFKPPSFMLLTVRC   84 (332)
Q Consensus         9 ~~~a~kRL~kEl~~l~~~p~~gi~v-~---p~ednl~~W~v~I~GP~dTpYeGGiF~l~I~fP~~YP~~PP~V~FlT~~~   84 (332)
                      .+.+.-||++|+.++.  .+++++. .   +.+-+..+++++|. |+++.|+||.|.|.+++|+.||+.||+|+|+|   
T Consensus        26 ~s~a~lrl~~di~eln--Lp~t~~~s~~~~~~d~~~~~~elti~-PdEGyY~gGkf~F~~~v~~~Yp~~PPKVkClt---   99 (184)
T KOG0420|consen   26 VSAALLRLKKDILELN--LPPTCSLSFPDSPDDLNNLEFELTIT-PDEGYYQGGKFRFKFKVPNAYPHEPPKVKCLT---   99 (184)
T ss_pred             ccHHHHHHHhhhhhcc--CCCccccccccCCcccccceEEEEEc-cCcceecCceEEEEEECCCCCCCCCCeeeeee---
Confidence            4568888888888875  4455442 2   22323336999999 99999999999999999999999999999999   


Q ss_pred             cccccccccccccCCceeecccccCCCCCCccccCCCeEEeecCCCCCCCCCCCCCHHHHHHHHHHhCCC-CCCChhh--
Q 020053           85 CSLMEHKSYCLCADYGVRTNVCAFFPPQPNGRFETQTKICLSISNHHPEHWQPSWSVRTALVALIAFMPT-NPNGALG--  161 (332)
Q Consensus        85 ~~~i~Hp~~~~~~~~~~~~n~~~~~h~~PNv~v~~~G~ICL~iL~~~~e~WsP~~ti~sVL~sI~~lL~~-nP~~~~~--  161 (332)
                        +|||                      ||  |+.+|.|||+||+   ++|+|..+|.+|+..|+.|+.+ +|+|+++  
T Consensus       100 --kV~H----------------------PN--Id~~GnVCLnILR---edW~P~lnL~sIi~GL~~LF~epn~eDpLN~e  150 (184)
T KOG0420|consen  100 --KVYH----------------------PN--IDLDGNVCLNILR---EDWRPVLNLNSIIYGLQFLFLEPNPEDPLNKE  150 (184)
T ss_pred             --cccc----------------------CC--cCCcchHHHHHHH---hcCccccchHHHHHHHHHHhccCCCcccccHH
Confidence              9999                      99  7899999999998   8999999999999999999976 8889988  


Q ss_pred             hhHhhHHhHHHHHHHHHHHHhhhCC
Q 020053          162 SLDYKKEERRALAIKSREAAPKFGT  186 (332)
Q Consensus       162 a~~~~~~dr~~y~~kare~~~kya~  186 (332)
                      |++...+|++.|+.++|+....|.-
T Consensus       151 AA~~l~~n~e~F~~~Vr~~m~gg~v  175 (184)
T KOG0420|consen  151 AAAVLKSNREGFENNVRRAMSGGCV  175 (184)
T ss_pred             HHHHHHhCHHHHHHHHHHHHhcCcc
Confidence            7888899999999999998877653

>KOG0427 consensus Ubiquitin conjugating enzyme [Posttranslational modification, protein turnover, chaperones]

Probab=99.92  E-value=3.3e-25  Score=189.23  Aligned_cols=119  Identities=25%  Similarity=0.581  Sum_probs=109.9

Q ss_pred             ccCCCChHHHHHHHHHHHHHhhCCCCCeEEecCCCCceEEEEEEeCCCCCCCCCCEEEEEEEcCCCCCCCCCcccccccc
Q 020053            4 DRYNLKNPAVKRILQEVKEMQSNPSDDFMSLPLEENIFEWQFAIRGPGDTEFEGGIYHGRIQLPAEYPFKPPSFMLLTVR   83 (332)
Q Consensus         4 ~~~~m~~~a~kRL~kEl~~l~~~p~~gi~v~p~ednl~~W~v~I~GP~dTpYeGGiF~l~I~fP~~YP~~PP~V~FlT~~   83 (332)
                      .++-|+..|.+||+|||.+|+.+|+.|+... +.+|+..|.+.+.|-+||.|+|..|.+.+.||+.||+..|.|.|..+ 
T Consensus         8 ~rk~ls~~at~RLqKEl~e~q~~pP~G~~~~-v~dnlqqWii~v~Ga~GTLYa~e~~qLq~~F~~~YP~esPqVmF~~~-   85 (161)
T KOG0427|consen    8 SRKALSKIATNRLQKELSEWQNNPPTGFKHR-VTDNLQQWIIEVTGAPGTLYANETYQLQVEFPEHYPMESPQVMFVGP-   85 (161)
T ss_pred             hHHHHHHHHHHHHHHHHHHHhcCCCCcceee-cccchheeEEEEecCCceeecCcEEEEEEecCCCCCCCCCeEEEecC-
Confidence            4667888999999999999999999999877 88999999999999999999999999999999999999999999983 


Q ss_pred             ccccccccccccccCCceeecccccCCCCCCccccCCCeEEeecCCCCCCCCCCCCCHHHHHHHHHHhCCC
Q 020053           84 CCSLMEHKSYCLCADYGVRTNVCAFFPPQPNGRFETQTKICLSISNHHPEHWQPSWSVRTALVALIAFMPT  154 (332)
Q Consensus        84 ~~~~i~Hp~~~~~~~~~~~~n~~~~~h~~PNv~v~~~G~ICL~iL~~~~e~WsP~~ti~sVL~sI~~lL~~  154 (332)
                         ...|                      |.  +|+||.|||+||.   +.|+|++++.+|.++|.++|.+
T Consensus        86 ---~P~H----------------------PH--iYSNGHICL~iL~---d~WsPAmsv~SvClSIlSMLSS  126 (161)
T KOG0427|consen   86 ---APLH----------------------PH--IYSNGHICLDILY---DSWSPAMSVQSVCLSILSMLSS  126 (161)
T ss_pred             ---CCCC----------------------Cc--eecCCeEEEEeec---ccCCcchhhHHHHHHHHHHHcc
Confidence               2233                      66  8999999999998   9999999999999999999965

>KOG0895 consensus Ubiquitin-conjugating enzyme [Posttranslational modification, protein turnover, chaperones]

Probab=99.62  E-value=3.2e-16  Score=168.22  Aligned_cols=117  Identities=28%  Similarity=0.492  Sum_probs=103.9

Q ss_pred             HHHHHHHHHHHhhCCCCCeEEecCCCCceEEEEEEeCCCCCCCCCCEEEEEEEcCCCCCCCCCccccccccccccccccc
Q 020053           13 VKRILQEVKEMQSNPSDDFMSLPLEENIFEWQFAIRGPGDTEFEGGIYHGRIQLPAEYPFKPPSFMLLTVRCCSLMEHKS   92 (332)
Q Consensus        13 ~kRL~kEl~~l~~~p~~gi~v~p~ednl~~W~v~I~GP~dTpYeGGiF~l~I~fP~~YP~~PP~V~FlT~~~~~~i~Hp~   92 (332)
                      .+..+.|.+-|..+.+.|+.+...++.|.-..+.|.||.+|||.+|.|.|.|.||++||.+||.+...+           
T Consensus       853 ~~~~~~~~~~~~~~~~~~~~vr~~e~r~d~~~~~~~g~~~tpy~~~~f~fd~~~~~~yp~~pp~~~~~s-----------  921 (1101)
T KOG0895|consen  853 AKKVQTEWKILPLSLPSGIFVRAYEDRMDLLRAVIVGAAGTPYQDGLFFFDFQFPQDYPSSPPLVHYHS-----------  921 (1101)
T ss_pred             HHHHHHHHHhhhccCCCceEEEechHHHHHHHHHhhCCCCCccccceEEEEeecCCCCCCCCCceEeec-----------
Confidence            445556777777788999999999998888899999999999999999999999999999999988766           


Q ss_pred             cccccCCceeecccccCCCCCCccccCCCeEEeecCCCC----CCCCCCCCCHHHHHHHHHHhCC-CCC
Q 020053           93 YCLCADYGVRTNVCAFFPPQPNGRFETQTKICLSISNHH----PEHWQPSWSVRTALVALIAFMP-TNP  156 (332)
Q Consensus        93 ~~~~~~~~~~~n~~~~~h~~PNv~v~~~G~ICL~iL~~~----~e~WsP~~ti~sVL~sI~~lL~-~nP  156 (332)
                            +|+|+|        ||  .|.+|+|||++|+.|    +|-|+|+.++.+||++||.|+. +.|
T Consensus       922 ------~~~r~n--------pn--ly~~g~vc~s~l~tw~g~~~e~w~~~s~~lq~l~s~q~l~l~~~p  974 (1101)
T KOG0895|consen  922 ------GGVRLN--------PN--LYEDGKVCLSLLNTWHGRGNEVWNPSSSILQVLVSIQGLVLNEEP  974 (1101)
T ss_pred             ------CceeeC--------cc--cccccceehhhhccccCCCccccCcchhHHHHHHHhhhhhccccc
Confidence                  569999        99  899999999999977    4789999999999999999974 344

>KOG0429 consensus Ubiquitin-conjugating enzyme-related protein Ft1, involved in programmed cell death [Posttranslational modification, protein turnover, chaperones]

Probab=99.62  E-value=4.6e-15  Score=136.57  Aligned_cols=137  Identities=18%  Similarity=0.261  Sum_probs=113.7

Q ss_pred             HHHHHHHHHhhCCCCCeEEecCCCCceEEEEEEeCCCCCCCCCCEEEEEEEcCCCCCC--CCCccccccccccccccccc
Q 020053           15 RILQEVKEMQSNPSDDFMSLPLEENIFEWQFAIRGPGDTEFEGGIYHGRIQLPAEYPF--KPPSFMLLTVRCCSLMEHKS   92 (332)
Q Consensus        15 RL~kEl~~l~~~p~~gi~v~p~ednl~~W~v~I~GP~dTpYeGGiF~l~I~fP~~YP~--~PP~V~FlT~~~~~~i~Hp~   92 (332)
                      -|+.|+..+.+++.+||++.|+..|-+.|.++|++ ..+.|.||+|+|+|.+|++||.  .-|+|.|.+     .++||.
T Consensus        23 ~llAEf~lV~~ekL~gIyviPSyan~l~WFGViFv-r~GiyaggVFRFtIliPdnfPdd~dlPrvvF~q-----~vfHP~   96 (258)
T KOG0429|consen   23 ALLAEFVLVCREKLDGIYVIPSYANKLLWFGVIFV-RKGIYAGGVFRFTILIPDNFPDDSDLPRVVFEQ-----SVFHPL   96 (258)
T ss_pred             HHHHHHHHHHhccCCceEEcccccccceEEEEEEE-ecccccCceEEEEEEcCccCCCcCCCCeEEeec-----cccccc
Confidence            56778888888999999999999999999999996 4558999999999999999994  459999999     899965


Q ss_pred             cccccCCceeecccccCCCCCCccccCCCeEEeecCCCCCCCCCC-CCCHHHHHHHHHHhCCCCCCCh------hhhhHh
Q 020053           93 YCLCADYGVRTNVCAFFPPQPNGRFETQTKICLSISNHHPEHWQP-SWSVRTALVALIAFMPTNPNGA------LGSLDY  165 (332)
Q Consensus        93 ~~~~~~~~~~~n~~~~~h~~PNv~v~~~G~ICL~iL~~~~e~WsP-~~ti~sVL~sI~~lL~~nP~~~------~~a~~~  165 (332)
                      .|                       ..++.+|++-.-   ..|.. ...|.+||+.||..+.+ |+..      ..|+.+
T Consensus        97 ic-----------------------p~skeLdl~raf---~eWRk~ehhiwqvL~ylqriF~d-pd~si~kl~N~eAa~l  149 (258)
T KOG0429|consen   97 IC-----------------------PKSKELDLNRAF---PEWRKEEHHIWQVLVYLQRIFYD-PDVSIDKLINPEAAVL  149 (258)
T ss_pred             cC-----------------------CCccceeHhhhh---hhhhccccHHHHHHHHHHHHhcC-cccchhhhcChHHHHH
Confidence            55                       345789998655   34955 67899999999999943 3321      237889


Q ss_pred             hHHhHHHHHHHHHHHHhhh
Q 020053          166 KKEERRALAIKSREAAPKF  184 (332)
Q Consensus       166 ~~~dr~~y~~kare~~~ky  184 (332)
                      |+++|+.|.++++++++..
T Consensus       150 ~~k~r~ef~~rvqe~vk~s  168 (258)
T KOG0429|consen  150 YKKHRDEFRERVQECVKAS  168 (258)
T ss_pred             HHHhHHHHHHHHHHHHHHH
Confidence            9999999999999987653

>KOG0895 consensus Ubiquitin-conjugating enzyme [Posttranslational modification, protein turnover, chaperones]

Probab=99.56  E-value=1.2e-14  Score=156.41  Aligned_cols=120  Identities=28%  Similarity=0.484  Sum_probs=110.5

Q ss_pred             hHHHHHHHHHHHHHhhCCCCCeEEecCCCCceEEEEEEeCCCCCCCCCCEEEEEEEcCCCCCCCCCcccccccccccccc
Q 020053           10 NPAVKRILQEVKEMQSNPSDDFMSLPLEENIFEWQFAIRGPGDTEFEGGIYHGRIQLPAEYPFKPPSFMLLTVRCCSLME   89 (332)
Q Consensus        10 ~~a~kRL~kEl~~l~~~p~~gi~v~p~ednl~~W~v~I~GP~dTpYeGGiF~l~I~fP~~YP~~PP~V~FlT~~~~~~i~   89 (332)
                      ..-.+|+++|++.|.++.+.|+.+.|.+..+...+++|.||.+|||++|+|.|+|.||..||..||.|.++|        
T Consensus       281 ~~~skrv~ke~~llskdlpEgifvrp~e~RMd~I~alIig~~gtPy~~glf~Fdiq~P~~yPa~pp~v~~lt--------  352 (1101)
T KOG0895|consen  281 KNWSKKVAKELKLLSKDLPEGIFVRPDEGRMDLIKALIIGPDGTPYADGLFLFDIQFPDTYPAVPPHVKYLT--------  352 (1101)
T ss_pred             hhhHHHHHHHhhhhcccCCCCccccccccccceeeeEEecCCCCCCcCCceeeEeecCCCCCCCCceeEEee--------
Confidence            346889999999999999999999999999999999999999999999999999999999999999999998        


Q ss_pred             ccccccccCCceeecccccCCCCCCccccCCCeEEeecCCCCC----CCCCCC-CCHHHHHHHHHHhCCCC
Q 020053           90 HKSYCLCADYGVRTNVCAFFPPQPNGRFETQTKICLSISNHHP----EHWQPS-WSVRTALVALIAFMPTN  155 (332)
Q Consensus        90 Hp~~~~~~~~~~~~n~~~~~h~~PNv~v~~~G~ICL~iL~~~~----e~WsP~-~ti~sVL~sI~~lL~~n  155 (332)
                              ++++|+|        ||  .|.+|+||+++|..|.    +.|+|. .++.++|.+||.++..+
T Consensus       353 --------~~~~R~n--------PN--lYn~GKVcLslLgTwtg~~~e~wtp~~~sl~qvL~sIQ~Li~~e  405 (1101)
T KOG0895|consen  353 --------GGGVRLN--------PN--LYNDGKVCLSLLGTWTGSRREKWTPNGSSLLQVLESIQGLILNE  405 (1101)
T ss_pred             --------ccceeec--------CC--cccCceEEeeeeeecccccccCCCccccchhhhhhhhhhhhccc
Confidence                    3478899        99  7999999999998663    579998 89999999999998654

>KOG0896 consensus Ubiquitin-conjugating enzyme E2 [Posttranslational modification, protein turnover, chaperones]

Probab=99.13  E-value=1.7e-10  Score=99.36  Aligned_cols=106  Identities=28%  Similarity=0.445  Sum_probs=82.0

Q ss_pred             HHHHHHHHHhhCCCCCeEEecCC--CC--ceEEEEEEeCCCCCCCCCCEEEEEEEcCCCCCCCCCccccccccccccccc
Q 020053           15 RILQEVKEMQSNPSDDFMSLPLE--EN--IFEWQFAIRGPGDTEFEGGIYHGRIQLPAEYPFKPPSFMLLTVRCCSLMEH   90 (332)
Q Consensus        15 RL~kEl~~l~~~p~~gi~v~p~e--dn--l~~W~v~I~GP~dTpYeGGiF~l~I~fP~~YP~~PP~V~FlT~~~~~~i~H   90 (332)
                      ||.+|+.+=++.--+|....-.+  +|  +..|...|.||+.|+||+.+|.++|.+..+||..||.|+|.+     +   
T Consensus         9 rlleele~g~kg~g~~~~s~gl~d~~dmtl~rWtg~IiGPprT~yEnRiysLKI~Cgp~YPe~PP~vrf~t-----k---   80 (138)
T KOG0896|consen    9 RLLEELEEGEKGIGDGTVSWGLEDDDDMTLTRWTGTIIGPPRTMYENRIYSLKIECGPKYPELPPTVRFGT-----K---   80 (138)
T ss_pred             hhhhhhccccccccCceeeccccCCCcceEeeeccceeCCCCcccccceeeEEEecCCCCCCCCceeEEEE-----E---
Confidence            79999988877666665444333  23  679999999999999999999999999999999999999999     3   


Q ss_pred             cccccccCCceeecccccCCCCCCccccCCCeEE---eecCCCCCCCCCCCCCHHHHHHHHHHhC
Q 020053           91 KSYCLCADYGVRTNVCAFFPPQPNGRFETQTKIC---LSISNHHPEHWQPSWSVRTALVALIAFM  152 (332)
Q Consensus        91 p~~~~~~~~~~~~n~~~~~h~~PNv~v~~~G~IC---L~iL~~~~e~WsP~~ti~sVL~sI~~lL  152 (332)
                                  +|+       +.+ ...+|.+-   +..|    .+|+-.++++.+|..++.+|
T Consensus        81 ------------inm-------~gv-n~~~g~Vd~~~i~~L----~~W~~~y~~~~vl~~lr~~m  121 (138)
T KOG0896|consen   81 ------------INM-------NGV-NSSNGVVDPRDITVL----ARWQRSYSIKMVLGQLRKEM  121 (138)
T ss_pred             ------------eee-------ccc-ccCCCccCccccchh----hcccccchhhHHHHhhhHHH
Confidence                        343       332 23344442   2334    68999999999999998766

>KOG0897 consensus Predicted ubiquitin-conjugating enzyme [Posttranslational modification, protein turnover, chaperones]

Probab=97.95  E-value=4.6e-06  Score=70.52  Aligned_cols=63  Identities=17%  Similarity=0.377  Sum_probs=52.4

Q ss_pred             EEEEEcCCCCCCCCCccccccccccccccccccccccCCceeecccccCCCCCCccccCCCeEEeecCCCCCCCCCCCCC
Q 020053           61 HGRIQLPAEYPFKPPSFMLLTVRCCSLMEHKSYCLCADYGVRTNVCAFFPPQPNGRFETQTKICLSISNHHPEHWQPSWS  140 (332)
Q Consensus        61 ~l~I~fP~~YP~~PP~V~FlT~~~~~~i~Hp~~~~~~~~~~~~n~~~~~h~~PNv~v~~~G~ICL~iL~~~~e~WsP~~t  140 (332)
                      -+.+.|+++||+.||.++...     +..                       -+|-+-.+|.||+.+|.  +++|+.+++
T Consensus        14 ll~~~f~~~fp~~ppf~rvv~-----p~~-----------------------~~Gyvl~ggAIcmellt--~qgwssay~   63 (122)
T KOG0897|consen   14 LLLDIFDDNFPFMPPFPRVVK-----PLE-----------------------DEGYVLEGGAICMELLT--KQGWSSAYE   63 (122)
T ss_pred             EeeeecccCCCCCCCcceeee-----ecc-----------------------cCCEEecchhhHHHHHc--cccccchhh
Confidence            467889999999999999888     221                       23336678999999998  589999999


Q ss_pred             HHHHHHHHHHhCC
Q 020053          141 VRTALVALIAFMP  153 (332)
Q Consensus       141 i~sVL~sI~~lL~  153 (332)
                      |+.++++|-..+-
T Consensus        64 Ve~vi~qiaatlV   76 (122)
T KOG0897|consen   64 VERVIMQIAATLV   76 (122)
T ss_pred             HHHHHHHHHHHhh
Confidence            9999999999884

>PF14461 Prok-E2_B: Prokaryotic E2 family B

Probab=97.94  E-value=1.8e-05  Score=67.94  Aligned_cols=72  Identities=25%  Similarity=0.588  Sum_probs=57.4

Q ss_pred             CCCEEEEEEEcCCCCCCCCCccccccccccccccccccccccCCceeecccccCCCCCCccccCCCeEEe---ecCCCCC
Q 020053           56 EGGIYHGRIQLPAEYPFKPPSFMLLTVRCCSLMEHKSYCLCADYGVRTNVCAFFPPQPNGRFETQTKICL---SISNHHP  132 (332)
Q Consensus        56 eGGiF~l~I~fP~~YP~~PP~V~FlT~~~~~~i~Hp~~~~~~~~~~~~n~~~~~h~~PNv~v~~~G~ICL---~iL~~~~  132 (332)
                      .|+.|.+.|.||++||..||.|....+.....+                        |.  ++.+|.||+   ...   .
T Consensus        34 ~~~~~~l~l~~p~~FP~~pp~v~l~d~~~~~~~------------------------pH--v~~~G~LCl~~~~~~---~   84 (133)
T PF14461_consen   34 GGGPFPLRLVFPDDFPYLPPRVYLEDPKQFPLL------------------------PH--VESDGKLCLLDEELV---L   84 (133)
T ss_pred             CCeEEEEEEEECCcccCcCCEEEecCccccCcc------------------------Ce--EcCCCeEEEecCCcc---c
Confidence            789999999999999999999988762110011                        44  788999999   444   3


Q ss_pred             CCCCCCCCHHHHHHHHHHhCCCCC
Q 020053          133 EHWQPSWSVRTALVALIAFMPTNP  156 (332)
Q Consensus       133 e~WsP~~ti~sVL~sI~~lL~~nP  156 (332)
                      +.|.|...+.++|...+.+|.+.+
T Consensus        85 D~~~P~~~~~~~l~~a~~lL~~~~  108 (133)
T PF14461_consen   85 DPWDPEGIIADCLERAIRLLEDGL  108 (133)
T ss_pred             CccCHHHHHHHHHHHHHHHHHHhh
Confidence            899999999999999999996443

>PF05743 UEV: UEV domain; InterPro: IPR008883 The N-terminal ubiquitin E2 variant (UEV) domain is ~145 amino acid residues in length and shows significant sequence similarity to E2 ubiquitin ligases but is unable to catalyze ubiquitin transfer as it lacks the active site cysteine that forms the transient thioester bond with the C terminus of ubiquitin (Ub)

Probab=97.38  E-value=0.00038  Score=59.28  Aligned_cols=86  Identities=21%  Similarity=0.443  Sum_probs=54.8

Q ss_pred             CceEEEEEEeCCCCCCCCCCEEE--EEEEcCCCCCCCCCccccccccccccccccccccccCCceeecccccCCCCCCcc
Q 020053           39 NIFEWQFAIRGPGDTEFEGGIYH--GRIQLPAEYPFKPPSFMLLTVRCCSLMEHKSYCLCADYGVRTNVCAFFPPQPNGR  116 (332)
Q Consensus        39 nl~~W~v~I~GP~dTpYeGGiF~--l~I~fP~~YP~~PP~V~FlT~~~~~~i~Hp~~~~~~~~~~~~n~~~~~h~~PNv~  116 (332)
                      .+....++|.    -.|+|..|.  +.|.+|.+||..||.+.+...   ..|.           ++.+        .+  
T Consensus        31 ~LL~L~Gtip----i~y~g~~y~iPi~Iwlp~~yP~~pP~v~v~pt---~~m~-----------I~~~--------~~--   82 (121)
T PF05743_consen   31 LLLCLYGTIP----ITYKGSTYNIPICIWLPENYPYSPPIVYVRPT---PSMV-----------IKPS--------HH--   82 (121)
T ss_dssp             EEEEEEEEEE----ECCTTCCEEEEEEEEE-TTTTTSSSEEEE-GC---CTEC-----------CGGC--------CC--
T ss_pred             eEEEEecCcc----cccCCcccceeEEEEEcccCCCCCCEEEEeCC---CCCC-----------cCCC--------Ce--
Confidence            4555555554    248888885  677789999999999876541   1111           0111        24  


Q ss_pred             ccCCCeEEeecCCCCCCCCCC-CCCHHHHHHHHHHhCCCCC
Q 020053          117 FETQTKICLSISNHHPEHWQP-SWSVRTALVALIAFMPTNP  156 (332)
Q Consensus       117 v~~~G~ICL~iL~~~~e~WsP-~~ti~sVL~sI~~lL~~nP  156 (332)
                      ++.+|+|.+..|    +.|++ ..++.+++..++..+.++|
T Consensus        83 Vd~~G~v~~pyL----~~W~~~~s~L~~lv~~l~~~F~~~p  119 (121)
T PF05743_consen   83 VDSNGRVYLPYL----QNWNPPSSNLVDLVQELQAVFSEEP  119 (121)
T ss_dssp             B-TTSBB-SHHH----HT--TTTS-HHHHHHHHHHCCCHS-
T ss_pred             ECCCCCEeCchh----ccCCCCCCCHHHHHHHHHHHHhHcC
Confidence            789999999999    57977 8899999999998886543

Nevertheless, at least some UEVs have retained the ability to bind Ub, and appear to act either as cofactors in ubiquitylation reactions, or as ubiquitin sensors. UEV domains also frequently contain other protein recognition motifs, and may generally serve to couple protein and Ub binding functions to facilitate the formation of multiprotein complexes [, , , ]. The UEV domain consists of a twisted four-stranded antiparallel beta-sheet having a meander topology, with four alpha-helices packed against one face of the sheet. The UEV fold is generally similar to canonical E2 ligases in the hydrophobic core and 'active site' regions, but differs significantly at both its N- and C-termini [, ]. The UEV domain is found in the eukaryotic tumour susceptibility gene 101 protein (TSG101). Altered transcripts of this gene have been detected in sporadic breast cancers and many other Homo sapiens malignancies. However, the involvement of this gene in neoplastic transformation and tumourigenesis is still elusive. TSG101 is required for normal cell function of embryonic and adult tissues but this gene is not a tumour suppressor for sporadic forms of breast cancer [].; GO: 0006464 protein modification process, 0015031 protein transport; PDB: 3R3Q_A 3R42_A 1UZX_A 3OBX_A 3OBS_A 3P9H_A 2F0R_A 3P9G_A 3OBQ_A 3OBU_A ....

>PF08694 UFC1: Ubiquitin-fold modifier-conjugating enzyme 1; InterPro: IPR014806 Ubiquitin-like (UBL) post-translational modifiers are covalently linked to most, if not all, target protein(s) through an enzymatic cascade analogous to ubiquitylation, consisting of E1 (activating), E2 (conjugating), and E3 (ligating) enzymes

Probab=96.26  E-value=0.0035  Score=55.30  Aligned_cols=66  Identities=20%  Similarity=0.277  Sum_probs=31.1

Q ss_pred             hHHHHHHHHHHHHHhhCCCCCeEEecCCCCceEEEEEEeCCCCCCCCCC----------EEEEEEEcCCCCCCCCCcccc
Q 020053           10 NPAVKRILQEVKEMQSNPSDDFMSLPLEENIFEWQFAIRGPGDTEFEGG----------IYHGRIQLPAEYPFKPPSFML   79 (332)
Q Consensus        10 ~~a~kRL~kEl~~l~~~p~~gi~v~p~ednl~~W~v~I~GP~dTpYeGG----------iF~l~I~fP~~YP~~PP~V~F   79 (332)
                      ..-..||..||..|.+.      +....++=..|.-.=.-+.||-|.|.          .|.+++.+|..||..||.+..
T Consensus        23 ~~W~~RLKEEy~aLI~Y------v~~nK~~DndWF~lesn~~GT~W~GkCW~~h~l~kYEF~~eFdIP~tYP~t~pEi~l   96 (161)
T PF08694_consen   23 DLWVQRLKEEYQALIKY------VENNKENDNDWFRLESNKEGTRWFGKCWYIHNLLKYEFDLEFDIPVTYPTTAPEIAL   96 (161)
T ss_dssp             HHHHHHHHHHHHHHHHH------HHHHHHTT---EEEEE-TTSSEEEEEEEEEETTEEEEEEEEEE--TTTTTS----B-
T ss_pred             HHHHHHHHHHHHHHHHH------HHhcccccCCeEEeccCCCCCccccEEEEEeeeeeEEEeeecCCCccCCCCCcceec
Confidence            45678999999998651      11111111122222223444444443          345667789999999999876


Q ss_pred             cc
Q 020053           80 LT   81 (332)
Q Consensus        80 lT   81 (332)
                      -.
T Consensus        97 Pe   98 (161)
T PF08694_consen   97 PE   98 (161)
T ss_dssp             GG
T ss_pred             cc
Confidence            54

Ubiquitin-fold modifier 1 (Ufm1) a ubiquitin-like protein is activated by a novel E1-like enzyme, Uba5, by forming a high-energy thioester bond. Activated Ufm1 is then transferred to its cognate E2-like enzyme, Ufc1, in a similar thioester linkage. This family represents the E2-like enzyme [].; PDB: 2Z6P_A 2K07_A 2Z6O_A 3EVX_D 3KPA_A.

>KOG2391 consensus Vacuolar sorting protein/ubiquitin receptor VPS23 [Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]

Probab=95.84  E-value=0.031  Score=55.45  Aligned_cols=118  Identities=21%  Similarity=0.356  Sum_probs=72.7

Q ss_pred             CCCChHHHHHHHHHHHHHhhCCCC-CeEEecC--CCCceEEEEEEeCCCCCCCCCCEEE--EEEEcCCCCCCCCCccccc
Q 020053            6 YNLKNPAVKRILQEVKEMQSNPSD-DFMSLPL--EENIFEWQFAIRGPGDTEFEGGIYH--GRIQLPAEYPFKPPSFMLL   80 (332)
Q Consensus         6 ~~m~~~a~kRL~kEl~~l~~~p~~-gi~v~p~--ednl~~W~v~I~GP~dTpYeGGiF~--l~I~fP~~YP~~PP~V~Fl   80 (332)
                      +|-...+.+.+...+.....-.+. ..+...+  ..+++...++|.    .+|.|-.|.  +.|.+.+.||+.||.+...
T Consensus        15 ~~~~~~~~~~~l~lls~~~sL~P~t~tf~~~Dg~s~~ll~~~GTIp----~~~~G~tYnIPV~iWlldtyP~~pP~c~Vn   90 (365)
T KOG2391|consen   15 YNYKDLTRQDLLNLLSSFKSLRPKTDTFTHNDGRSRLLLQLDGTIP----VPYQGVTYNIPVIIWLLDTYPYYPPICYVN   90 (365)
T ss_pred             ccchhhHHHHHHHHHHhccccCcccceEEecCCCccchhhccCccc----ccccCCcccceEEEEecccCCCCCCeEEec
Confidence            334444555555544444432222 2222322  235665555554    468888876  5677899999999988655


Q ss_pred             ccccc-ccccccccccccCCceeecccccCCCCCCccccCCCeEEeecCCCCCCCCCC-CCCHHHHHHHHHHhCCCCC
Q 020053           81 TVRCC-SLMEHKSYCLCADYGVRTNVCAFFPPQPNGRFETQTKICLSISNHHPEHWQP-SWSVRTALVALIAFMPTNP  156 (332)
Q Consensus        81 T~~~~-~~i~Hp~~~~~~~~~~~~n~~~~~h~~PNv~v~~~G~ICL~iL~~~~e~WsP-~~ti~sVL~sI~~lL~~nP  156 (332)
                      ...+- .++ |                      -+  |+.+|+|.|..|.    .|.+ +.++..++.-|.+.+.++|
T Consensus        91 PT~~M~ik~-~----------------------~h--Vd~nG~V~LPYLh----~W~~pssdLv~Liq~l~a~f~~~p  139 (365)
T KOG2391|consen   91 PTSTMIIKV-H----------------------EH--VDPNGKVYLPYLH----NWDPPSSDLVGLIQELIAAFSEDP  139 (365)
T ss_pred             CCchhhhHH-h----------------------hc--cCCCCeEechhhc----cCCCccchHHHHHHHHHHHhcCCC
Confidence            42110 111 2                      33  7899999999995    7965 7788888888888885543

>PF05773 RWD: RWD domain; InterPro: IPR006575 The RWD eukaryotic domain is found in RING finger (IPR001841 from INTERPRO) and WD repeat (IPR001680 from INTERPRO) containing proteins and DEXDc-like helicase (IPR001410 from INTERPRO) subfamily related to the ubiquitin-conjugating enzymes domain (IPR000608 from INTERPRO)

Probab=94.18  E-value=0.13  Score=41.23  Aligned_cols=67  Identities=19%  Similarity=0.181  Sum_probs=42.8

Q ss_pred             HHHHHHHHHHhhCCCCCeEEecCCCCceEEEEEEeC--CCCCCCCCCEEEEEEEcCCCCCCCCCcccccc
Q 020053           14 KRILQEVKEMQSNPSDDFMSLPLEENIFEWQFAIRG--PGDTEFEGGIYHGRIQLPAEYPFKPPSFMLLT   81 (332)
Q Consensus        14 kRL~kEl~~l~~~p~~gi~v~p~ednl~~W~v~I~G--P~dTpYeGGiF~l~I~fP~~YP~~PP~V~FlT   81 (332)
                      .+...|+..|+.--++.+ ......+...+.+.+.+  ...+.-....+++.|.||++||..+|.|.+..
T Consensus         4 e~~~~EieaL~sIy~~~~-~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~~p~~YP~~~P~i~l~~   72 (113)
T PF05773_consen    4 EQQEEEIEALQSIYPDDF-IEIESKSPPSLEVKLDESSSSFESSSFPSVTLHFTLPPGYPESPPKISLES   72 (113)
T ss_dssp             HHHHHHHHHHHHHSSSSE-SSSTSSSSEEEEEEE--CEECCTTTTSEEEEEEEEE-SSTTSS--EEEEEE
T ss_pred             HHHHHHHHHHHHHcCCCc-cccccCCCCceeeeecccccccccccceeEEEEEeCCCcCCCcCCEEEEEc
Confidence            467788888887555544 22334455566777732  23344455689999999999999999998777

; GO: 0005515 protein binding; PDB: 2EBM_A 2EBK_A 2DAX_A 2DAW_A 2DAY_A 2DMF_A 1UKX_A 2YZ0_A.

>KOG3357 consensus Uncharacterized conserved protein [Function unknown]

Probab=93.96  E-value=0.11  Score=45.43  Aligned_cols=65  Identities=18%  Similarity=0.274  Sum_probs=42.0

Q ss_pred             HHHHHHHHHHHHHhhCCCCCeEEecCCCCceEEEEEEeCCCCCCCCCCE----------EEEEEEcCCCCCCCCCccccc
Q 020053           11 PAVKRILQEVKEMQSNPSDDFMSLPLEENIFEWQFAIRGPGDTEFEGGI----------YHGRIQLPAEYPFKPPSFMLL   80 (332)
Q Consensus        11 ~a~kRL~kEl~~l~~~p~~gi~v~p~ednl~~W~v~I~GP~dTpYeGGi----------F~l~I~fP~~YP~~PP~V~Fl   80 (332)
                      .=+.||..||+.|...      +.-..++-..|.-.=.-+.+|-|-|..          |.+++.+|-.||...|.+..-
T Consensus        27 ~wvqrlkeey~sli~y------vqnnk~~d~dwfrlesn~egtrwfgkcwy~hnllkyefdvefdipityp~tapeialp  100 (167)
T KOG3357|consen   27 LWVQRLKEEYQSLIAY------VQNNKSNDNDWFRLESNKEGTRWFGKCWYVHNLLKYEFDVEFDIPITYPTTAPEIALP  100 (167)
T ss_pred             HHHHHHHHHHHHHHHH------HHhCcccCCcceEeccCccccceehhhhHhhhhhhheeeeeeccccccCCCCcccccc
Confidence            3468999999998652      111222223444444557777776643          456677899999999988654


Q ss_pred             c
Q 020053           81 T   81 (332)
Q Consensus        81 T   81 (332)
                      .
T Consensus       101 e  101 (167)
T KOG3357|consen  101 E  101 (167)
T ss_pred             c
Confidence            4

>smart00591 RWD domain in RING finger and WD repeat containing proteins and DEXDc-like helicases subfamily related to the UBCc domain

Probab=93.11  E-value=0.39  Score=38.23  Aligned_cols=40  Identities=25%  Similarity=0.350  Sum_probs=27.4

Q ss_pred             EEEEEEeCCCC-CCCCCCEEEEEEEcCCCCCCCCCcccccc
Q 020053           42 EWQFAIRGPGD-TEFEGGIYHGRIQLPAEYPFKPPSFMLLT   81 (332)
Q Consensus        42 ~W~v~I~GP~d-TpYeGGiF~l~I~fP~~YP~~PP~V~FlT   81 (332)
                      .+.+.+....+ +.-..-.+.+.|.||.+||..+|.+.+..
T Consensus        24 ~~~i~l~~~~~~~~~~~~~~~l~~~~p~~YP~~~P~i~~~~   64 (107)
T smart00591       24 EITIKLSPSSDEGEDQYVSLTLQVKLPENYPDEAPPISLLN   64 (107)
T ss_pred             EEEEEEecCCCCCCccceEEEEEEECCCCCCCCCCCeEEEC
Confidence            45555542221 12334568899999999999999988876

>PF14462 Prok-E2_E: Prokaryotic E2 family E

Probab=91.74  E-value=1  Score=38.89  Aligned_cols=101  Identities=18%  Similarity=0.262  Sum_probs=60.7

Q ss_pred             CeEEecCCCCceEEEEEEeC--CCCCCCCCCEEEEEEEcCCCCCCCCCccccccccccccccccccccccCCceeecccc
Q 020053           30 DFMSLPLEENIFEWQFAIRG--PGDTEFEGGIYHGRIQLPAEYPFKPPSFMLLTVRCCSLMEHKSYCLCADYGVRTNVCA  107 (332)
Q Consensus        30 gi~v~p~ednl~~W~v~I~G--P~dTpYeGGiF~l~I~fP~~YP~~PP~V~FlT~~~~~~i~Hp~~~~~~~~~~~~n~~~  107 (332)
                      |+....+.+.-..|.+ |.|  -+.+.|....-.+-|.+|..||..+|.+.+..+.         -.+.+++.+      
T Consensus        13 g~~~E~v~eg~~~~li-i~~~~LP~G~y~~~~~dili~iP~gYP~~~~DmfY~~P~---------L~~~~G~~i------   76 (122)
T PF14462_consen   13 GLRWETVTEGGRRWLI-IKGYPLPEGKYNHNEVDILILIPPGYPDAPLDMFYVYPP---------LKLADGGPI------   76 (122)
T ss_pred             CceEEEEEeCCccEEE-EeCCcCCCCccCccceEEEEECCCCCCCCCCCcEEECCc---------eEccCCCcC------
Confidence            5555555455556655 665  3456699999999999999999999988777731         111111111      


Q ss_pred             cCCCCCCc---cccCCCeEEeecCCCCCCCCCCCC-CHHHHHHHHHHhC
Q 020053          108 FFPPQPNG---RFETQTKICLSISNHHPEHWQPSW-SVRTALVALIAFM  152 (332)
Q Consensus       108 ~~h~~PNv---~v~~~G~ICL~iL~~~~e~WsP~~-ti~sVL~sI~~lL  152 (332)
                           ||-   .-.-.|+.=--...+ +..|.|.. +|.+.|.-|...|
T Consensus        77 -----P~~~~~~~~~~G~~wQrWSRH-~~~W~P~~D~l~T~l~~v~~~L  119 (122)
T PF14462_consen   77 -----PNAAEVTQTFDGRTWQRWSRH-NNPWRPGVDDLWTHLARVEHAL  119 (122)
T ss_pred             -----CchhcchhhcCCeeeeeecCC-CCCCCCCCCcHHHHHHHHHHHH
Confidence                 210   011224443334443 46788854 6888877777655

>PF14457 Prok-E2_A: Prokaryotic E2 family A

Probab=84.98  E-value=6.6  Score=35.27  Aligned_cols=74  Identities=23%  Similarity=0.428  Sum_probs=50.6

Q ss_pred             CCCEEE---EEEEcCCCCCCCCCccccccccccccccccccccccCCceeecccccCCCCCCccccCCCeEEeecCCCCC
Q 020053           56 EGGIYH---GRIQLPAEYPFKPPSFMLLTVRCCSLMEHKSYCLCADYGVRTNVCAFFPPQPNGRFETQTKICLSISNHHP  132 (332)
Q Consensus        56 eGGiF~---l~I~fP~~YP~~PP~V~FlT~~~~~~i~Hp~~~~~~~~~~~~n~~~~~h~~PNv~v~~~G~ICL~iL~~~~  132 (332)
                      .+|+..   +.|.|+.+||+.+|.|.++..+|-...-|                    .|+-. ...-..+||---..  
T Consensus        48 ~~gir~~E~~~i~~~~~~~~~~P~v~~lR~dFP~~lpH--------------------~~~~~-~~~p~~lCl~~~~~--  104 (162)
T PF14457_consen   48 PVGIRRVERVAIVFPPDSPLSAPEVPALRKDFPGNLPH--------------------QNPGP-EGEPVSLCLYEGPW--  104 (162)
T ss_pred             CCCccccceEEEEecCCCCCCCccchhhHhhCCCCCCc--------------------cCCCC-CCCCccceEecCCH--
Confidence            345554   56899999999999887777444222222                    11221 12336899975542  


Q ss_pred             CCCCCCCCHHHHHHHHHHhC
Q 020053          133 EHWQPSWSVRTALVALIAFM  152 (332)
Q Consensus       133 e~WsP~~ti~sVL~sI~~lL  152 (332)
                      ..|.+.++++.+|..|..-|
T Consensus       105 ~e~~~~~g~~~~l~rl~~Wl  124 (162)
T PF14457_consen  105 SEWRPSWGPEGFLDRLFDWL  124 (162)
T ss_pred             HHhhhccCHHHHHHHHHHHH
Confidence            67999999999999998887

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	332
2f4w_A	187	Human Ubiquitin-Conjugating Enzyme E2 J2 Length = 1		9e-27
3rz3_A	183	Human Cdc34 E2 In Complex With Cc0651 Inhibitor Len		3e-11
2ob4_A	180	Human Ubiquitin-Conjugating Enzyme Cdc34 Length = 1		3e-11
2oxq_A	152	Structure Of The Ubch5 :chip U-Box Complex Length =		4e-11
2ayv_A	166	Crystal Structure Of A Putative Ubiquitin-Conjugati		5e-11
2c4p_A	165	Crystal Structure Of Human Ubiquitin-Conjugating En		1e-10
2yho_B	149	The Idol-Ube2d Complex Mediates Sterol-Dependent De		1e-10
4ap4_B	153	Rnf4 - Ubch5a - Ubiquitin Heterotrimeric Complex Le		1e-10
3fsh_A	168	Crystal Structure Of The Ubiquitin Conjugating Enzy		1e-10
2kly_A	167	Solution Structure Of Human Ubiquitin Conjugating E		1e-10
3h8k_A	164	Crystal Structure Of Ube2g2 Complxed With The G2br		1e-10
3oj4_A	153	Crystal Structure Of The A20 Znf4, Ubiquitin And Ub		1e-10
2cyx_A	170	Structure Of Human Ubiquitin-Conjugating Enzyme E2		1e-10
4ii2_C	163	Crystal Structure Of Ubiquitin Activating Enzyme 1		2e-10
2esp_A	149	Human Ubiquitin-Conjugating Enzyme (E2) Ubch5b Muta		3e-10
2esk_A	149	Human Ubiquitin-Conjugating Enzyme (E2) Ubch5b, Wil		3e-10
3tgd_A	152	Crystal Structure Of The Human Ubiquitin-Conjugatin		3e-10
2esq_A	149	Human Ubiquitin-Conjugating Enzyme (E2) Ubch5b Muta		3e-10
2c4o_B	165	Crystal Structure Of Human Ubiquitin-Conjugating En		3e-10
3eb6_B	149	Structure Of The Ciap2 Ring Domain Bound To Ubch5b		3e-10
1ur6_A	147	Nmr Based Structural Model Of The Ubch5b-Cnot4 Comp		4e-10
3l1y_A	157	Crystal Structure Of Human Ubc4 E2 Conjugating Enzy		4e-10
2c4o_A	165	Crystal Structure Of Human Ubiquitin-Conjugating En		4e-10
4auq_A	147	Structure Of Birc7-Ubch5b-Ub Complex. Length = 147		4e-10
3a33_A	150	Ubch5b~ubiquitin Conjugate Length = 150		4e-10
3rpg_A	149	Bmi1RING1B-Ubch5c Complex Structure Length = 149		4e-10
1q34_A	163	Crystal Structures Of Two Ubc (E2) Enzymes Of The U		5e-10
2fuh_A	146	Solution Structure Of The Ubch5cUB NON-Covalent Com		5e-10
3l1z_A	157	Crystal Structure Of The U-Box Domain Of Human E4b		5e-10
3ugb_A	147	Ubch5c~ubiquitin Conjugate Length = 147		5e-10
1z3d_A	157	Protein Crystal Growth Improvement Leading To The 2		5e-10
1x23_A	155	Crystal Structure Of Ubch5c Length = 155		5e-10
4gpr_A	151	Crystal Structure Of Ehubc5, A Ubiquitin Conjugatin		5e-10
1qcq_A	148	Ubiquitin Conjugating Enzyme Length = 148		6e-10
3jvz_A	146	E2~ubiquitin-Hect Length = 146		8e-10
1jas_A	152	Hsubc2b Length = 152		9e-10
4ddg_A	399	Crystal Structure Of Human Otub1UBCH5B~UBUB Length		1e-09
2eso_A	149	Human Ubiquitin-Conjugating Enzyme (E2) Ubch5b Muta		2e-09
2aak_A	152	Ubiquitin Conjugating Enzyme From Arabidopsis Thali		2e-09
1z2u_A	150	The 1.1a Crystallographic Structure Of Ubiquitin- C		2e-09
3e95_A	151	Crystal Structure Of The Plasmodium Falciparum Ubiq		8e-09
2r0j_A	149	Crystal Structure Of The Putative Ubiquitin Conjuga		8e-09
1jat_A	155	Mms2UBC13 UBIQUITIN CONJUGATING ENZYME COMPLEX Leng		9e-09
1jbb_A	153	Ubiquitin Conjugating Enzyme, Ubc13 Length = 153		9e-09
3bzh_A	194	Crystal Structure Of Human Ubiquitin-Conjugating En		1e-08
1y6l_A	149	Human Ubiquitin Conjugating Enzyme E2e2 Length = 14		1e-08
2awf_A	172	Structure Of Human Ubiquitin-Conjugating Enzyme E2		3e-08
2e2c_A	156	E2-C, An Ubiquitin Conjugating Enzyme Required For		3e-08
2pwq_A	216	Crystal Structure Of A Putative Ubiquitin Conjugati		4e-08
1ayz_A	169	Crystal Structure Of The Saccharomyces Cerevisiae U		1e-07
2gmi_A	152	Mms2UBC13~UBIQUITIN Length = 152		1e-07
3e46_A	253	Crystal Structure Of Ubiquitin-Conjugating Enzyme E		2e-07
4fh1_A	153	S. Cerevisiae Ubc13-N79a Length = 153		2e-07
3k9p_A	217	The Crystal Structure Of E2-25k And Ubiquitin Compl		3e-07
2bep_A	159	Crystal Structure Of Ubiquitin Conjugating Enzyme E		6e-07
1yla_A	202	Ubiquitin-Conjugating Enzyme E2-25 Kda (Huntington		6e-07
2ucz_A	165	Ubiquitin Conjugating Enzyme (Ubc7) From Saccharomy		6e-07
3k9o_A	201	The Crystal Structure Of E2-25k And Ubb+1 Complex L		7e-07
2c2v_B	154	Crystal Structure Of The Chip-Ubc13-Uev1a Complex L		8e-07
1j7d_B	152	Crystal Structure Of Hmms2-Hubc13 Length = 152		9e-07
3hct_B	155	Crystal Structure Of Traf6 In Complex With Ubc13 In		9e-07
3von_C	148	Crystalstructure Of The Ubiquitin Protease Length =		9e-07
4epo_B	155	Crystal Structure Of Rnf8 Bound To The Ubc13MMS2 HE		9e-07
1pzv_A	164	Crystal Structures Of Two Ubc (E2) Enzymes Of The U		1e-06
3sqv_C	156	Crystal Structure Of E. Coli O157:h7 E3 Ubiquitin L		2e-06
1c4z_D	154	Structure Of E6ap: Insights Into Ubiquitination Pat		2e-06
1fxt_A	149	Structure Of A Conjugating Enzyme-Ubiquitin Thioles		8e-06
1tte_A	215	The Structure Of A Class Ii Ubiquitin-Conjugating E		9e-06
1zdn_A	158	Ubiquitin-Conjugating Enzyme E2s Length = 158		1e-05
2f4z_A	193	Toxoplasma Gondii Ubiquitin Conjugating Enzyme Tgtw		2e-05
1i7k_A	179	Crystal Structure Of Human Mitotic-Specific Ubiquit		6e-05
3rcz_B	163	Rad60 Sld2 Ubc9 Complex Length = 163		6e-05
1u9a_A	160	Human Ubiquitin-Conjugating Enzyme Ubc9 Length = 16		2e-04
2gro_A	161	Crystal Structure Of Human Rangap1-Ubc9-N85q Length		3e-04
2grp_A	161	Crystal Structure Of Human Rangap1-Ubc9-Y87a Length		4e-04
3a4s_A	163	The Crystal Structure Of The Sld2:ubc9 Complex Leng		4e-04
2o25_C	160	Ubiquitin-Conjugating Enzyme E2-25 Kda Complexed Wi		4e-04
1kps_A	159	Structural Basis For E2-Mediated Sumo Conjugation R		4e-04
1z5s_A	158	Crystal Structure Of A Complex Between Ubc9, Sumo-1		4e-04
2grq_A	161	Crystal Structure Of Human Rangap1-Ubc9-D127a Lengt		4e-04
2grr_A	161	Crystal Structure Of Human Rangap1-Ubc9-D127s Lengt		5e-04
2grn_A	161	Crystal Structure Of Human Rangap1-Ubc9 Length = 16		5e-04
2y9m_A	172	Pex4p-Pex22p Structure Length = 172		7e-04
2y9p_A	172	Pex4p-Pex22p Mutant Ii Structure Length = 172		8e-04
4epo_A	149	Crystal Structure Of Rnf8 Bound To The Ubc13MMS2 HE		8e-04
1j74_A	145	Crystal Structure Of Mms2 Length = 145		9e-04

>pdb|2F4W|A Chain A, Human Ubiquitin-Conjugating Enzyme E2 J2 Length = 187

Iteration: 1
 Score =  117 bits (293), Expect = 9e-27,   Method: Compositional matrix adjust.
 Identities = 58/166 (34%), Positives = 87/166 (52%), Gaps = 32/166 (19%)
Query: 12  AVKRILQEVKEMQSNPSDDFMSLPLEENIFEWQFAIRGPGDTEFEGGIYHGRIQLPAEYP 71
           A +R+ Q+   ++ +P     + PL  NI EW + +RGP  T +EGG YHG++  P E+P
Sbjct: 15  ATQRLKQDYLRIKKDPVPYICAEPLPSNILEWHYVVRGPEMTPYEGGYYHGKLIFPREFP 74
Query: 72  FKPPSFMLLTVRCCSLMEHKSYCLCADYGVRTNVCAFFPPQPNGRFETQTKICLSISNHH 131
           FKPPS  ++T                               PNGRF+  T++CLSI++ H
Sbjct: 75  FKPPSIYMIT-------------------------------PNGRFKCNTRLCLSITDFH 103
Query: 132 PEHWQPSWSVRTALVALIAFMPTNPNGALGSLDYKKEERRALAIKS 177
           P+ W P+WSV T L  L++FM       LGS++     +R LA++S
Sbjct: 104 PDTWNPAWSVSTILTGLLSFM-VEKGPTLGSIETSDFTKRQLAVQS 148

>pdb|3RZ3|A Chain A, Human Cdc34 E2 In Complex With Cc0651 Inhibitor Length = 183

Iteration: 1
 Score = 66.2 bits (160), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 42/141 (29%), Positives = 71/141 (50%), Gaps = 22/141 (15%)
Query: 14  KRILQEVKEMQSNPSDDF-MSLPLEENIFEWQFAIRGPGDTEFEGGIYHGRIQLPAEYPF 72
           K +L E+K +Q  P + F ++L  E +++ W+ AI GP +T +EGG +  R++ P +YP+
Sbjct: 10  KALLLELKGLQEEPVEGFRVTLVDEGDLYNWEVAIFGPPNTYYEGGYFKARLKFPIDYPY 69
Query: 73  KPPSFMLLTVRCCSLMEHKSYCLCADYGVRTNVCAFFPPQPNGRFETQTKICLSISNHHP 132
            PP+F  LT      M H +     D      +    PP  + +           S   P
Sbjct: 70  SPPAFRFLTK-----MWHPNIYETGD----VCISILHPPVDDPQ-----------SGELP 109
Query: 133 -EHWQPSWSVRTALVALIAFM 152
            E W P+ +VRT L+++I+ +
Sbjct: 110 SERWNPTQNVRTILLSVISLL 130

>pdb|2OB4|A Chain A, Human Ubiquitin-Conjugating Enzyme Cdc34 Length = 180

Iteration: 1
 Score = 65.9 bits (159), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 42/141 (29%), Positives = 71/141 (50%), Gaps = 22/141 (15%)
Query: 14  KRILQEVKEMQSNPSDDF-MSLPLEENIFEWQFAIRGPGDTEFEGGIYHGRIQLPAEYPF 72
           K +L E+K +Q  P + F ++L  E +++ W+ AI GP +T +EGG +  R++ P +YP+
Sbjct: 7   KALLLELKGLQEEPVEGFRVTLVDEGDLYNWEVAIFGPPNTYYEGGYFKARLKFPIDYPY 66
Query: 73  KPPSFMLLTVRCCSLMEHKSYCLCADYGVRTNVCAFFPPQPNGRFETQTKICLSISNHHP 132
            PP+F  LT      M H +     D      +    PP  + +           S   P
Sbjct: 67  SPPAFRFLTK-----MWHPNIYETGD----VCISILHPPVDDPQ-----------SGELP 106
Query: 133 -EHWQPSWSVRTALVALIAFM 152
            E W P+ +VRT L+++I+ +
Sbjct: 107 SERWNPTQNVRTILLSVISLL 127

>pdb|2OXQ|A Chain A, Structure Of The Ubch5 :chip U-Box Complex Length = 152

Iteration: 1
 Score = 65.5 bits (158), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 40/146 (27%), Positives = 67/146 (45%), Gaps = 33/146 (22%)
Query: 12  AVKRILQEVKEMQSNPSDDFMSLPLEENIFEWQFAIRGPGDTEFEGGIYHGRIQLPAEYP 71
           A+KRI +E++++Q +P     + P+ +++F WQ  I GP D+ ++GG++   I  P +YP
Sbjct: 7   ALKRIQKELQDLQRDPPAQCSAGPVGDDLFHWQATIMGPSDSPYQGGVFFLTIHFPTDYP 66
Query: 72  FKPPSFMLLTVRCCSLMEHKSYCLCADYGVRTNVCAFFPPQPNGRFETQTKICLSISNHH 131
           FKPP     T         K Y                   PN    +   ICL I    
Sbjct: 67  FKPPKVAFTT---------KIY------------------HPN--INSNGSICLDILR-- 95
Query: 132 PEHWQPSWSVRTALVALIAFMPTNPN 157
              W P+ +V   L+++ + +  +PN
Sbjct: 96  -SQWSPALTVSKVLLSICSLL-CDPN 119

>pdb|2AYV|A Chain A, Crystal Structure Of A Putative Ubiquitin-Conjugating Enzyme E2 From Toxoplasma Gondii Length = 166

Iteration: 1
 Score = 65.1 bits (157), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 40/146 (27%), Positives = 69/146 (47%), Gaps = 33/146 (22%)
Query: 12  AVKRILQEVKEMQSNPSDDFMSLPLEENIFEWQFAIRGPGDTEFEGGIYHGRIQLPAEYP 71
           A+KRI +E+ ++  +P  +  + P+ +++F WQ  I GP D+ + GG++   I  P++YP
Sbjct: 22  ALKRINKELNDLSKDPPTNCSAGPVGDDMFHWQATIMGPEDSPYSGGVFFLNIHFPSDYP 81
Query: 72  FKPPSFMLLTVRCCSLMEHKSYCLCADYGVRTNVCAFFPPQPNGRFETQTKICLSISNHH 131
           FKPP     T         K Y                   PN    +Q  ICL I    
Sbjct: 82  FKPPKVNFTT---------KIY------------------HPN--INSQGAICLDILK-- 110
Query: 132 PEHWQPSWSVRTALVALIAFMPTNPN 157
            + W P+ ++   L+++ + + T+PN
Sbjct: 111 -DQWSPALTISKVLLSISSLL-TDPN 134

>pdb|2C4P|A Chain A, Crystal Structure Of Human Ubiquitin-Conjugating Enzyme Ubch5a Length = 165

Iteration: 1
 Score = 64.3 bits (155), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 39/146 (26%), Positives = 66/146 (45%), Gaps = 33/146 (22%)
Query: 12  AVKRILQEVKEMQSNPSDDFMSLPLEENIFEWQFAIRGPGDTEFEGGIYHGRIQLPAEYP 71
           A+KRI +E+ ++Q +P     + P+ +++F WQ  I GP D+ ++GG++   +  P +YP
Sbjct: 20  ALKRIQKELSDLQRDPPAHCSAGPVGDDLFHWQATIMGPPDSAYQGGVFFLTVHFPTDYP 79
Query: 72  FKPPSFMLLTVRCCSLMEHKSYCLCADYGVRTNVCAFFPPQPNGRFETQTKICLSISNHH 131
           FKPP     T         K Y                   PN    +   ICL I    
Sbjct: 80  FKPPKIAFTT---------KIY------------------HPN--INSNGSICLDILR-- 108
Query: 132 PEHWQPSWSVRTALVALIAFMPTNPN 157
              W P+ +V   L+++ + +  +PN
Sbjct: 109 -SQWSPALTVSKVLLSICSLL-CDPN 132

>pdb|2YHO|B Chain B, The Idol-Ube2d Complex Mediates Sterol-Dependent Degradation Of The Ldl Receptor Length = 149

Iteration: 1
 Score = 63.9 bits (154), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 25/70 (35%), Positives = 43/70 (61%)
Query: 12 AVKRILQEVKEMQSNPSDDFMSLPLEENIFEWQFAIRGPGDTEFEGGIYHGRIQLPAEYP 71
          A+KRI +E+ ++Q +P     + P+ +++F WQ  I GP D+ ++GG++   +  P +YP
Sbjct: 4  ALKRIQKELSDLQRDPPAHCSAGPVGDDLFHWQATIMGPPDSAYQGGVFFLTVHFPTDYP 63
Query: 72 FKPPSFMLLT 81
          FKPP     T
Sbjct: 64 FKPPKIAFTT 73

>pdb|4AP4|B Chain B, Rnf4 - Ubch5a - Ubiquitin Heterotrimeric Complex Length = 153

Iteration: 1
 Score = 63.9 bits (154), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 25/70 (35%), Positives = 43/70 (61%)
Query: 12 AVKRILQEVKEMQSNPSDDFMSLPLEENIFEWQFAIRGPGDTEFEGGIYHGRIQLPAEYP 71
          A+KRI +E+ ++Q +P     + P+ +++F WQ  I GP D+ ++GG++   +  P +YP
Sbjct: 8  ALKRIQKELSDLQRDPPAHCRAGPVGDDLFHWQATIMGPPDSAYQGGVFFLTVHFPTDYP 67
Query: 72 FKPPSFMLLT 81
          FKPP     T
Sbjct: 68 FKPPKIAFTT 77

>pdb|3FSH|A Chain A, Crystal Structure Of The Ubiquitin Conjugating Enzyme Ube2g2 Bound To The G2br Domain Of Ubiquitin Ligase Gp78 Length = 168

Iteration: 1
 Score = 63.9 bits (154), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 47/169 (27%), Positives = 74/169 (43%), Gaps = 48/169 (28%)
Query: 7   NLKNPAVKRILQEVKEMQSNPSDDFMSLPL-EENIFEWQFAIRGPGDTEFEGGIYHGRIQ 65
           ++   A+KR++ E K++  NP +  ++ P+ EEN FEW+  I GP DT FE G++   + 
Sbjct: 3   HMAGTALKRLMAEYKQLTLNPPEGIVAGPMNEENFFEWEALIMGPEDTCFEFGVFPAILS 62
Query: 66  LPAEYPFKPPSFMLLTVRCCSLMEHKSYCLCADYGVRTNVCAFFPPQ--PNGRFETQTKI 123
            P +YP  PP                              C  F P   P+GR      +
Sbjct: 63  FPLDYPLSPPKMRF-------------------------TCEMFHPNIYPDGR------V 91
Query: 124 CLSISNHHP-----------EHWQPSWSVRTALVALIAFM--PTNPNGA 159
           C+SI  H P           E W P  SV   L+++++ +  P + +GA
Sbjct: 92  CISIL-HAPGDDPMGYESSAERWSPVQSVEKILLSVVSMLAEPNDESGA 139

>pdb|2KLY|A Chain A, Solution Structure Of Human Ubiquitin Conjugating Enzyme Ube2g2 Length = 167

Iteration: 1
 Score = 63.9 bits (154), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 47/169 (27%), Positives = 74/169 (43%), Gaps = 48/169 (28%)
Query: 7   NLKNPAVKRILQEVKEMQSNPSDDFMSLPL-EENIFEWQFAIRGPGDTEFEGGIYHGRIQ 65
           ++   A+KR++ E K++  NP +  ++ P+ EEN FEW+  I GP DT FE G++   + 
Sbjct: 2   HMAGTALKRLMAEYKQLTLNPPEGIVAGPMNEENFFEWEALIMGPEDTCFEFGVFPAILS 61
Query: 66  LPAEYPFKPPSFMLLTVRCCSLMEHKSYCLCADYGVRTNVCAFFPPQ--PNGRFETQTKI 123
            P +YP  PP                              C  F P   P+GR      +
Sbjct: 62  FPLDYPLSPPKMRF-------------------------TCEMFHPNIYPDGR------V 90
Query: 124 CLSISNHHP-----------EHWQPSWSVRTALVALIAFM--PTNPNGA 159
           C+SI  H P           E W P  SV   L+++++ +  P + +GA
Sbjct: 91  CISIL-HAPGDDPMGYESSAERWSPVQSVEKILLSVVSMLAEPNDESGA 138

>pdb|3H8K|A Chain A, Crystal Structure Of Ube2g2 Complxed With The G2br Domain Of Gp78 At 1.8-A Resolution Length = 164

Iteration: 1
 Score = 63.9 bits (154), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 47/164 (28%), Positives = 72/164 (43%), Gaps = 48/164 (29%)
Query: 12  AVKRILQEVKEMQSNPSDDFMSLPL-EENIFEWQFAIRGPGDTEFEGGIYHGRIQLPAEY 70
           A+KR++ E K++  NP +  ++ P+ EEN FEW+  I GP DT FE G++   +  P +Y
Sbjct: 4   ALKRLMAEYKQLTLNPPEGIVAGPMNEENFFEWEALIMGPEDTCFEFGVFPAILSFPLDY 63
Query: 71  PFKPPSFMLLTVRCCSLMEHKSYCLCADYGVRTNVCAFFPPQ--PNGRFETQTKICLSIS 128
           P  PP                              C  F P   P+GR      +C+SI 
Sbjct: 64  PLSPPKMRF-------------------------TCEMFHPNIYPDGR------VCISIL 92
Query: 129 NHHP-----------EHWQPSWSVRTALVALIAFM--PTNPNGA 159
            H P           E W P  SV   L+++++ +  P + +GA
Sbjct: 93  -HAPGDDPMGYESSAERWSPVQSVEKILLSVVSMLAEPNDESGA 135

>pdb|3OJ4|A Chain A, Crystal Structure Of The A20 Znf4, Ubiquitin And Ubch5a Complex Length = 153

Iteration: 1
 Score = 63.9 bits (154), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 25/70 (35%), Positives = 43/70 (61%)
Query: 12 AVKRILQEVKEMQSNPSDDFMSLPLEENIFEWQFAIRGPGDTEFEGGIYHGRIQLPAEYP 71
          A+KRI +E+ ++Q +P     + P+ +++F WQ  I GP D+ ++GG++   +  P +YP
Sbjct: 8  ALKRIQKELSDLQRDPPAHCSAGPVGDDLFHWQATIMGPPDSAYQGGVFFLTVHFPTDYP 67
Query: 72 FKPPSFMLLT 81
          FKPP     T
Sbjct: 68 FKPPKIAFTT 77

>pdb|2CYX|A Chain A, Structure Of Human Ubiquitin-Conjugating Enzyme E2 G2 (Ube2g2UBC7) Length = 170

Iteration: 1
 Score = 63.9 bits (154), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 47/164 (28%), Positives = 72/164 (43%), Gaps = 48/164 (29%)
Query: 12  AVKRILQEVKEMQSNPSDDFMSLPL-EENIFEWQFAIRGPGDTEFEGGIYHGRIQLPAEY 70
           A+KR++ E K++  NP +  ++ P+ EEN FEW+  I GP DT FE G++   +  P +Y
Sbjct: 10  ALKRLMAEYKQLTLNPPEGIVAGPMNEENFFEWEALIMGPEDTCFEFGVFPAILSFPLDY 69
Query: 71  PFKPPSFMLLTVRCCSLMEHKSYCLCADYGVRTNVCAFFPPQ--PNGRFETQTKICLSIS 128
           P  PP                              C  F P   P+GR      +C+SI 
Sbjct: 70  PLSPPKMRF-------------------------TCEMFHPNIYPDGR------VCISIL 98
Query: 129 NHHP-----------EHWQPSWSVRTALVALIAFM--PTNPNGA 159
            H P           E W P  SV   L+++++ +  P + +GA
Sbjct: 99  -HAPGDDPMGYESSAERWSPVQSVEKILLSVVSMLAEPNDESGA 141

>pdb|4II2|C Chain C, Crystal Structure Of Ubiquitin Activating Enzyme 1 (uba1) In Complex With The Ub E2 Ubc4, Ubiquitin, And Atp/mg Length = 163

Iteration: 1
 Score = 62.8 bits (151), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 38/146 (26%), Positives = 67/146 (45%), Gaps = 33/146 (22%)
Query: 12  AVKRILQEVKEMQSNPSDDFMSLPLEENIFEWQFAIRGPGDTEFEGGIYHGRIQLPAEYP 71
           A+KRI +E+ ++  +P     + P+ +++F WQ  I GP D+ + GG++   I  P +YP
Sbjct: 2   ALKRINRELADLGKDPPSSSSAGPVGDDLFHWQATIMGPADSPYAGGVFFLSIHFPTDYP 61
Query: 72  FKPPSFMLLTVRCCSLMEHKSYCLCADYGVRTNVCAFFPPQPNGRFETQTKICLSISNHH 131
           FKPP      V   + + H                      PN    +   ICL I    
Sbjct: 62  FKPPK-----VNFTTRIYH----------------------PN--INSNGSICLDILR-- 90
Query: 132 PEHWQPSWSVRTALVALIAFMPTNPN 157
            + W P+ ++   L+++ + + T+PN
Sbjct: 91  -DQWSPALTISKVLLSISSLL-TDPN 114

>pdb|2ESP|A Chain A, Human Ubiquitin-Conjugating Enzyme (E2) Ubch5b Mutant Ile88ala Length = 149

Iteration: 1
 Score = 62.4 bits (150), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 25/70 (35%), Positives = 42/70 (60%)
Query: 12 AVKRILQEVKEMQSNPSDDFMSLPLEENIFEWQFAIRGPGDTEFEGGIYHGRIQLPAEYP 71
          A+KRI +E+ ++  +P     + P+ +++F WQ  I GP D+ ++GG++   I  P +YP
Sbjct: 4  ALKRIHKELNDLARDPPAQCSAGPVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYP 63
Query: 72 FKPPSFMLLT 81
          FKPP     T
Sbjct: 64 FKPPKVAFTT 73

>pdb|2ESK|A Chain A, Human Ubiquitin-Conjugating Enzyme (E2) Ubch5b, Wild-Type Length = 149

Iteration: 1
 Score = 62.4 bits (150), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 25/70 (35%), Positives = 42/70 (60%)
Query: 12 AVKRILQEVKEMQSNPSDDFMSLPLEENIFEWQFAIRGPGDTEFEGGIYHGRIQLPAEYP 71
          A+KRI +E+ ++  +P     + P+ +++F WQ  I GP D+ ++GG++   I  P +YP
Sbjct: 4  ALKRIHKELNDLARDPPAQCSAGPVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYP 63
Query: 72 FKPPSFMLLT 81
          FKPP     T
Sbjct: 64 FKPPKVAFTT 73

>pdb|3TGD|A Chain A, Crystal Structure Of The Human Ubiquitin-Conjugating Enzyme (E2) Ubch5b Length = 152

Iteration: 1
 Score = 62.4 bits (150), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 25/70 (35%), Positives = 42/70 (60%)
Query: 12 AVKRILQEVKEMQSNPSDDFMSLPLEENIFEWQFAIRGPGDTEFEGGIYHGRIQLPAEYP 71
          A+KRI +E+ ++  +P     + P+ +++F WQ  I GP D+ ++GG++   I  P +YP
Sbjct: 7  ALKRIHKELNDLARDPPAQCSAGPVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYP 66
Query: 72 FKPPSFMLLT 81
          FKPP     T
Sbjct: 67 FKPPKVAFTT 76

>pdb|2ESQ|A Chain A, Human Ubiquitin-Conjugating Enzyme (E2) Ubch5b Mutant Ser94gly Length = 149

Iteration: 1
 Score = 62.4 bits (150), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 25/70 (35%), Positives = 42/70 (60%)
Query: 12 AVKRILQEVKEMQSNPSDDFMSLPLEENIFEWQFAIRGPGDTEFEGGIYHGRIQLPAEYP 71
          A+KRI +E+ ++  +P     + P+ +++F WQ  I GP D+ ++GG++   I  P +YP
Sbjct: 4  ALKRIHKELNDLARDPPAQCSAGPVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYP 63
Query: 72 FKPPSFMLLT 81
          FKPP     T
Sbjct: 64 FKPPKVAFTT 73

>pdb|2C4O|B Chain B, Crystal Structure Of Human Ubiquitin-Conjugating Enzyme Ubch5b Length = 165

Iteration: 1
 Score = 62.4 bits (150), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 25/70 (35%), Positives = 42/70 (60%)
Query: 12 AVKRILQEVKEMQSNPSDDFMSLPLEENIFEWQFAIRGPGDTEFEGGIYHGRIQLPAEYP 71
          A+KRI +E+ ++  +P     + P+ +++F WQ  I GP D+ ++GG++   I  P +YP
Sbjct: 20 ALKRIHKELNDLARDPPAQCSAGPVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYP 79
Query: 72 FKPPSFMLLT 81
          FKPP     T
Sbjct: 80 FKPPKVAFTT 89

>pdb|3EB6|B Chain B, Structure Of The Ciap2 Ring Domain Bound To Ubch5b Length = 149

Iteration: 1
 Score = 62.4 bits (150), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 25/70 (35%), Positives = 42/70 (60%)
Query: 12 AVKRILQEVKEMQSNPSDDFMSLPLEENIFEWQFAIRGPGDTEFEGGIYHGRIQLPAEYP 71
          A+KRI +E+ ++  +P     + P+ +++F WQ  I GP D+ ++GG++   I  P +YP
Sbjct: 4  ALKRIHKELNDLARDPPAQCSAGPVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYP 63
Query: 72 FKPPSFMLLT 81
          FKPP     T
Sbjct: 64 FKPPKVAFTT 73

>pdb|1UR6|A Chain A, Nmr Based Structural Model Of The Ubch5b-Cnot4 Complex Length = 147

Iteration: 1
 Score = 62.4 bits (150), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 25/70 (35%), Positives = 42/70 (60%)
Query: 12 AVKRILQEVKEMQSNPSDDFMSLPLEENIFEWQFAIRGPGDTEFEGGIYHGRIQLPAEYP 71
          A+KRI +E+ ++  +P     + P+ +++F WQ  I GP D+ ++GG++   I  P +YP
Sbjct: 2  ALKRIHKELNDLARDPPAQCSAGPVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYP 61
Query: 72 FKPPSFMLLT 81
          FKPP     T
Sbjct: 62 FKPPKVAFTT 71

>pdb|3L1Y|A Chain A, Crystal Structure Of Human Ubc4 E2 Conjugating Enzyme Length = 157

Iteration: 1
 Score = 62.4 bits (150), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 25/70 (35%), Positives = 42/70 (60%)
Query: 12 AVKRILQEVKEMQSNPSDDFMSLPLEENIFEWQFAIRGPGDTEFEGGIYHGRIQLPAEYP 71
          A+KRI +E+ ++  +P     + P+ +++F WQ  I GP D+ ++GG++   I  P +YP
Sbjct: 12 ALKRIHKELNDLARDPPAQCSAGPVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYP 71
Query: 72 FKPPSFMLLT 81
          FKPP     T
Sbjct: 72 FKPPKVAFTT 81

>pdb|2C4O|A Chain A, Crystal Structure Of Human Ubiquitin-Conjugating Enzyme Ubch5b Length = 165

Iteration: 1
 Score = 62.4 bits (150), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 25/70 (35%), Positives = 42/70 (60%)
Query: 12 AVKRILQEVKEMQSNPSDDFMSLPLEENIFEWQFAIRGPGDTEFEGGIYHGRIQLPAEYP 71
          A+KRI +E+ ++  +P     + P+ +++F WQ  I GP D+ ++GG++   I  P +YP
Sbjct: 20 ALKRIHKELNDLARDPPAQCSAGPVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYP 79
Query: 72 FKPPSFMLLT 81
          FKPP     T
Sbjct: 80 FKPPKVAFTT 89

>pdb|4AUQ|A Chain A, Structure Of Birc7-Ubch5b-Ub Complex. Length = 147

Iteration: 1
 Score = 62.4 bits (150), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 25/70 (35%), Positives = 42/70 (60%)
Query: 12 AVKRILQEVKEMQSNPSDDFMSLPLEENIFEWQFAIRGPGDTEFEGGIYHGRIQLPAEYP 71
          A+KRI +E+ ++  +P     + P+ +++F WQ  I GP D+ ++GG++   I  P +YP
Sbjct: 2  ALKRIHKELNDLARDPPAQCRAGPVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYP 61
Query: 72 FKPPSFMLLT 81
          FKPP     T
Sbjct: 62 FKPPKVAFTT 71

>pdb|3A33|A Chain A, Ubch5b~ubiquitin Conjugate Length = 150

Iteration: 1
 Score = 62.4 bits (150), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 25/70 (35%), Positives = 42/70 (60%)
Query: 12 AVKRILQEVKEMQSNPSDDFMSLPLEENIFEWQFAIRGPGDTEFEGGIYHGRIQLPAEYP 71
          A+KRI +E+ ++  +P     + P+ +++F WQ  I GP D+ ++GG++   I  P +YP
Sbjct: 5  ALKRIHKELNDLARDPPAQCSAGPVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYP 64
Query: 72 FKPPSFMLLT 81
          FKPP     T
Sbjct: 65 FKPPKVAFTT 74

>pdb|3RPG|A Chain A, Bmi1RING1B-Ubch5c Complex Structure Length = 149

Iteration: 1
 Score = 62.0 bits (149), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 25/70 (35%), Positives = 42/70 (60%)
Query: 12 AVKRILQEVKEMQSNPSDDFMSLPLEENIFEWQFAIRGPGDTEFEGGIYHGRIQLPAEYP 71
          A+KRI +E+ ++  +P     + P+ +++F WQ  I GP D+ ++GG++   I  P +YP
Sbjct: 4  ALKRINKELSDLARDPPAQCSAGPVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYP 63
Query: 72 FKPPSFMLLT 81
          FKPP     T
Sbjct: 64 FKPPKVAFTT 73

>pdb|1Q34|A Chain A, Crystal Structures Of Two Ubc (E2) Enzymes Of The Ubiquitin- Conjugating System In Caenorhabditis Elegans Length = 163

Iteration: 1
 Score = 62.0 bits (149), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 44/167 (26%), Positives = 73/167 (43%), Gaps = 36/167 (21%)
Query: 8   LKNPAVKRILQEVKEMQSNPSDDFMSLPLEENIFEWQFAIRGPGDTEFEGGIYHGRIQLP 67
           +  P+ +R++++ K++Q +P       P E+NI  W+  I GP +T FE G +   ++  
Sbjct: 1   MTTPSRRRLMRDFKKLQEDPPAGVSGAPTEDNILTWEAIIFGPQETPFEDGTFKLSLEFT 60
Query: 68  AEYPFKPPSFMLLTVRCCSLMEHKSYCLCADYGVRTNVCAFFPPQPNGRFETQTKICLSI 127
            EYP KPP     TV+  S M H             NV A               ICL I
Sbjct: 61  EEYPNKPP-----TVKFISKMFHP------------NVYA------------DGSICLDI 91
Query: 128 SNHHPEHWQPSWSVRTALVALIAFM----PTNPNGALGSLDYKKEER 170
             +    W P++ V   L ++ + +    P +P  +L +  Y++  R
Sbjct: 92  LQN---RWSPTYDVAAILTSIQSLLDEPNPNSPANSLAAQLYQENRR 135

>pdb|2FUH|A Chain A, Solution Structure Of The Ubch5cUB NON-Covalent Complex Length = 146

Iteration: 1
 Score = 62.0 bits (149), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 25/70 (35%), Positives = 42/70 (60%)
Query: 12 AVKRILQEVKEMQSNPSDDFMSLPLEENIFEWQFAIRGPGDTEFEGGIYHGRIQLPAEYP 71
          A+KRI +E+ ++  +P     + P+ +++F WQ  I GP D+ ++GG++   I  P +YP
Sbjct: 1  ALKRINKELSDLARDPPAQCSAGPVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYP 60
Query: 72 FKPPSFMLLT 81
          FKPP     T
Sbjct: 61 FKPPKVAFTT 70

>pdb|3L1Z|A Chain A, Crystal Structure Of The U-Box Domain Of Human E4b Ubiquitin Ligase In Complex With Ubch5c E2 Ubiquitin Conjugating Enzyme Length = 157

Iteration: 1
 Score = 62.0 bits (149), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 25/70 (35%), Positives = 42/70 (60%)
Query: 12 AVKRILQEVKEMQSNPSDDFMSLPLEENIFEWQFAIRGPGDTEFEGGIYHGRIQLPAEYP 71
          A+KRI +E+ ++  +P     + P+ +++F WQ  I GP D+ ++GG++   I  P +YP
Sbjct: 12 ALKRINKELSDLARDPPAQCSAGPVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYP 71
Query: 72 FKPPSFMLLT 81
          FKPP     T
Sbjct: 72 FKPPKVAFTT 81

>pdb|3UGB|A Chain A, Ubch5c~ubiquitin Conjugate Length = 147

Iteration: 1
 Score = 62.0 bits (149), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 25/70 (35%), Positives = 42/70 (60%)
Query: 12 AVKRILQEVKEMQSNPSDDFMSLPLEENIFEWQFAIRGPGDTEFEGGIYHGRIQLPAEYP 71
          A+KRI +E+ ++  +P     + P+ +++F WQ  I GP D+ ++GG++   I  P +YP
Sbjct: 2  ALKRINKELSDLARDPPAQCSAGPVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYP 61
Query: 72 FKPPSFMLLT 81
          FKPP     T
Sbjct: 62 FKPPKVAFTT 71

>pdb|1Z3D|A Chain A, Protein Crystal Growth Improvement Leading To The 2.5a Crystallographic Structure Of Ubiquitin-Conjugating Enzyme (Ubc-1) From Caenorhabditis Elegans Length = 157

Iteration: 1
 Score = 61.6 bits (148), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 44/168 (26%), Positives = 74/168 (44%), Gaps = 36/168 (21%)
Query: 7   NLKNPAVKRILQEVKEMQSNPSDDFMSLPLEENIFEWQFAIRGPGDTEFEGGIYHGRIQL 66
           ++  P+ +R++++ K++Q +P       P E+NI  W+  I GP +T FE G +   ++ 
Sbjct: 3   HMTTPSRRRLMRDFKKLQEDPPAGVSGAPTEDNILTWEAIIFGPQETPFEDGTFKLSLEF 62
Query: 67  PAEYPFKPPSFMLLTVRCCSLMEHKSYCLCADYGVRTNVCAFFPPQPNGRFETQTKICLS 126
             EYP KPP     TV+  S M H             NV A               ICL 
Sbjct: 63  TEEYPNKPP-----TVKFISKMFHP------------NVYA------------DGSICLD 93
Query: 127 ISNHHPEHWQPSWSVRTALVALIAFM----PTNPNGALGSLDYKKEER 170
           I  +    W P++ V   L ++ + +    P +P  +L +  Y++  R
Sbjct: 94  ILQN---RWSPTYDVAAILTSIQSLLDEPNPNSPANSLAAQLYQENRR 138

>pdb|1X23|A Chain A, Crystal Structure Of Ubch5c Length = 155

Iteration: 1
 Score = 61.6 bits (148), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 25/70 (35%), Positives = 42/70 (60%)
Query: 12 AVKRILQEVKEMQSNPSDDFMSLPLEENIFEWQFAIRGPGDTEFEGGIYHGRIQLPAEYP 71
          A+KRI +E+ ++  +P     + P+ +++F WQ  I GP D+ ++GG++   I  P +YP
Sbjct: 10 ALKRINKELSDLARDPPAQCSAGPVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYP 69
Query: 72 FKPPSFMLLT 81
          FKPP     T
Sbjct: 70 FKPPKVAFTT 79

>pdb|4GPR|A Chain A, Crystal Structure Of Ehubc5, A Ubiquitin Conjugating Enzyme From Entamoeba Histolytica Length = 151

Iteration: 1
 Score = 61.6 bits (148), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 24/70 (34%), Positives = 44/70 (62%)
Query: 12 AVKRILQEVKEMQSNPSDDFMSLPLEENIFEWQFAIRGPGDTEFEGGIYHGRIQLPAEYP 71
          A++RI +E++E+Q +P  +  + P+ ++IF W   I GP D+ ++GG++   +  P +YP
Sbjct: 5  AMRRIQKELREIQQDPPCNCSAGPVGDDIFHWTATITGPDDSPYQGGLFFLDVHFPVDYP 64
Query: 72 FKPPSFMLLT 81
          FK P    +T
Sbjct: 65 FKAPRVTFMT 74

>pdb|1QCQ|A Chain A, Ubiquitin Conjugating Enzyme Length = 148

Iteration: 1
 Score = 61.6 bits (148), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 23/68 (33%), Positives = 41/68 (60%)
Query: 14 KRILQEVKEMQSNPSDDFMSLPLEENIFEWQFAIRGPGDTEFEGGIYHGRIQLPAEYPFK 73
          KRI +E+ +++ +P     + P+ ++++ WQ +I GP D+ + GG++   I  P +YPFK
Sbjct: 5  KRIAKELSDLERDPPTSCSAGPVGDDLYHWQASIMGPADSPYAGGVFFLSIHFPTDYPFK 64
Query: 74 PPSFMLLT 81
          PP     T
Sbjct: 65 PPKISFTT 72

>pdb|3JVZ|A Chain A, E2~ubiquitin-Hect Length = 146

Iteration: 1
 Score = 61.2 bits (147), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 25/70 (35%), Positives = 41/70 (58%)
Query: 12 AVKRILQEVKEMQSNPSDDFMSLPLEENIFEWQFAIRGPGDTEFEGGIYHGRIQLPAEYP 71
          A KRI +E+ ++  +P     + P+ +++F WQ  I GP D+ ++GG++   I  P +YP
Sbjct: 1  ASKRIHKELNDLARDPPAQCSAGPVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYP 60
Query: 72 FKPPSFMLLT 81
          FKPP     T
Sbjct: 61 FKPPKVAFTT 70

>pdb|1JAS|A Chain A, Hsubc2b Length = 152

Iteration: 1
 Score = 60.8 bits (146), Expect = 9e-10,   Method: Compositional matrix adjust.
 Identities = 51/176 (28%), Positives = 73/176 (41%), Gaps = 40/176 (22%)
Query: 8   LKNPAVKRILQEVKEMQSNPSDDFMSLPLEENIFEWQFAIRGPGDTEFEGGIYHGRIQLP 67
           +  PA +R++++ K +Q +P       P E NI +W   I GP  T FE G +   I+  
Sbjct: 1   MSTPARRRLMRDFKRLQEDPPVGVSGAPSENNIMQWNAVIFGPEGTPFEDGTFKLVIEFS 60
Query: 68  AEYPFKPPSFMLLTVRCCSLMEHKSYCLCADYGVRTNVCAFFPPQPNGRFETQTKICLSI 127
            EYP KPP     TVR  S M H             NV A               ICL I
Sbjct: 61  EEYPNKPP-----TVRFLSKMFHP------------NVYA------------DGSICLDI 91
Query: 128 SNHHPEHWQPSWSVRTALVALIAFM-------PTNPNGALGSLDYKKE-ERRALAI 175
             +    W P++ V + L ++ + +       P N   A    + K+E E+R  AI
Sbjct: 92  LQN---RWSPTYDVSSILTSIQSLLDEPNPNSPANSQAAQLYQENKREYEKRVSAI 144

>pdb|4DDG|A Chain A, Crystal Structure Of Human Otub1UBCH5B~UBUB Length = 399

Iteration: 1
 Score = 60.5 bits (145), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 25/70 (35%), Positives = 42/70 (60%)
Query: 12 AVKRILQEVKEMQSNPSDDFMSLPLEENIFEWQFAIRGPGDTEFEGGIYHGRIQLPAEYP 71
          A+KRI +E+ ++  +P     + P+ +++F WQ  I GP D+ ++GG++   I  P +YP
Sbjct: 4  ALKRIHKELNDLARDPPAQCSAGPVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYP 63
Query: 72 FKPPSFMLLT 81
          FKPP     T
Sbjct: 64 FKPPKVAFTT 73

>pdb|2ESO|A Chain A, Human Ubiquitin-Conjugating Enzyme (E2) Ubch5b Mutant Ile37ala Length = 149

Iteration: 1
 Score = 60.1 bits (144), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 24/70 (34%), Positives = 41/70 (58%)
Query: 12 AVKRILQEVKEMQSNPSDDFMSLPLEENIFEWQFAIRGPGDTEFEGGIYHGRIQLPAEYP 71
          A+KRI +E+ ++  +P     + P+ +++F WQ    GP D+ ++GG++   I  P +YP
Sbjct: 4  ALKRIHKELNDLARDPPAQCSAGPVGDDMFHWQATAMGPNDSPYQGGVFFLTIHFPTDYP 63
Query: 72 FKPPSFMLLT 81
          FKPP     T
Sbjct: 64 FKPPKVAFTT 73

>pdb|2AAK|A Chain A, Ubiquitin Conjugating Enzyme From Arabidopsis Thaliana Length = 152

Iteration: 1
 Score = 59.7 bits (143), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 44/167 (26%), Positives = 68/167 (40%), Gaps = 36/167 (21%)
Query: 8   LKNPAVKRILQEVKEMQSNPSDDFMSLPLEENIFEWQFAIRGPGDTEFEGGIYHGRIQLP 67
           +  PA KR++++ K +Q +P       P + NI  W   I GP DT ++GG +   +Q  
Sbjct: 1   MSTPARKRLMRDFKRLQQDPPAGISGAPQDNNIMLWNAVIFGPDDTPWDGGTFKLSLQFS 60
Query: 68  AEYPFKPPSFMLLTVRCCSLMEHKSYCLCADYGVRTNVCAFFPPQPNGRFETQTKICLSI 127
            +YP KPP     TVR  S M H                      PN        ICL I
Sbjct: 61  EDYPNKPP-----TVRFVSRMFH----------------------PN--IYADGSICLDI 91
Query: 128 SNHHPEHWQPSWSVRTALVALIAFM----PTNPNGALGSLDYKKEER 170
             +    W P + V   L ++ + +    P +P  +  +  Y + +R
Sbjct: 92  LQN---QWSPIYDVAAILTSIQSLLCDPNPNSPANSEAARMYSESKR 135

>pdb|1Z2U|A Chain A, The 1.1a Crystallographic Structure Of Ubiquitin- Conjugating Enzyme (Ubc-2) From Caenorhabditis Elegans: Functional And Evolutionary Significance Length = 150

Iteration: 1
 Score = 59.7 bits (143), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 24/70 (34%), Positives = 43/70 (61%)
Query: 12 AVKRILQEVKEMQSNPSDDFMSLPLEENIFEWQFAIRGPGDTEFEGGIYHGRIQLPAEYP 71
          A+KRI +E++++  +P     + P+ +++F WQ  I GP ++ ++GG++   I  P +YP
Sbjct: 5  ALKRIQKELQDLGRDPPAQCSAGPVGDDLFHWQATIMGPPESPYQGGVFFLTIHFPTDYP 64
Query: 72 FKPPSFMLLT 81
          FKPP     T
Sbjct: 65 FKPPKVAFTT 74

>pdb|3E95|A Chain A, Crystal Structure Of The Plasmodium Falciparum Ubiquitin Conjugating Enzyme Complex, Pfubc13-Pfuev1a Length = 151

Iteration: 1
 Score = 57.8 bits (138), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 42/163 (25%), Positives = 71/163 (43%), Gaps = 36/163 (22%)
Query: 14  KRILQEVKEMQSNPSDDFMSLPLEENIFEWQFAIRGPGDTEFEGGIYHGRIQLPAEYPFK 73
           +RI +E + + + P    M++P+ EN   +   I GP  T +EGG Y   + LP +YP +
Sbjct: 4   RRITKETQNLANEPPPGIMAVPVPENYRHFNILINGPDGTPYEGGTYKLELFLPEQYPME 63
Query: 74  PPSFMLLTVRCCSLMEHKSYCLCADYGVRTNVCAFFPPQPNGRFETQTKICLSISNHHPE 133
           PP    LT         K Y                   PN   +   +ICL I     +
Sbjct: 64  PPKVRFLT---------KIY------------------HPN--IDKLGRICLDILK---D 91
Query: 134 HWQPSWSVRTALVALIAFM----PTNPNGALGSLDYKKEERRA 172
            W P+  +RT L+++ A +    P +P  +  +  +K+++  A
Sbjct: 92  KWSPALQIRTVLLSIQALLSSPEPDDPLDSKVAEHFKQDKNDA 134

>pdb|2R0J|A Chain A, Crystal Structure Of The Putative Ubiquitin Conjugating Enzyme, Pfe1350c, From Plasmodium Falciparum Length = 149

Iteration: 1
 Score = 57.8 bits (138), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 42/163 (25%), Positives = 71/163 (43%), Gaps = 36/163 (22%)
Query: 14  KRILQEVKEMQSNPSDDFMSLPLEENIFEWQFAIRGPGDTEFEGGIYHGRIQLPAEYPFK 73
           +RI +E + + + P    M++P+ EN   +   I GP  T +EGG Y   + LP +YP +
Sbjct: 4   RRITKETQNLANEPPPGIMAVPVPENYRHFNILINGPDGTPYEGGTYKLELFLPEQYPME 63
Query: 74  PPSFMLLTVRCCSLMEHKSYCLCADYGVRTNVCAFFPPQPNGRFETQTKICLSISNHHPE 133
           PP    LT         K Y                   PN   +   +ICL I     +
Sbjct: 64  PPKVRFLT---------KIY------------------HPN--IDKLGRICLDILK---D 91
Query: 134 HWQPSWSVRTALVALIAFM----PTNPNGALGSLDYKKEERRA 172
            W P+  +RT L+++ A +    P +P  +  +  +K+++  A
Sbjct: 92  KWSPALQIRTVLLSIQALLSSPEPDDPLDSKVAEHFKQDKNDA 134

>pdb|1JAT|A Chain A, Mms2UBC13 UBIQUITIN CONJUGATING ENZYME COMPLEX Length = 155

Iteration: 1
 Score = 57.8 bits (138), Expect = 9e-09,   Method: Compositional matrix adjust.
 Identities = 47/170 (27%), Positives = 79/170 (46%), Gaps = 37/170 (21%)
Query: 14  KRILQEVKEMQSNPSDDFMSLPLEENIFEWQFAIRGPGDTEFEGGIYHGRIQLPAEYPFK 73
           KRI++E +++ S+P     + P ++N+  +Q  I GP  + +E GI+   + LP +YP +
Sbjct: 8   KRIIKETEKLVSDPVPGITAEPHDDNLRYFQVTIEGPEQSPYEDGIFELELYLPDDYPME 67
Query: 74  PPSFMLLTVRCCSLMEHKSYCLCADYGVRTNVCAFFPPQPNGRFETQTKICLSISNHHPE 133
            P    LT         K Y                   PN   +   +ICL +      
Sbjct: 68  APKVRFLT---------KIY------------------HPN--IDRLGRICLDVLK---T 95
Query: 134 HWQPSWSVRTALVALIAFMPT-NPNGALG---SLDYKKEERRALAIKSRE 179
           +W P+  +RT L+++ A + + NPN  L    + D+ K E+ A A K+RE
Sbjct: 96  NWSPALQIRTVLLSIQALLASPNPNDPLANDVAEDWIKNEQGAKA-KARE 144

>pdb|1JBB|A Chain A, Ubiquitin Conjugating Enzyme, Ubc13 Length = 153

Iteration: 1
 Score = 57.8 bits (138), Expect = 9e-09,   Method: Compositional matrix adjust.
 Identities = 47/170 (27%), Positives = 79/170 (46%), Gaps = 37/170 (21%)
Query: 14  KRILQEVKEMQSNPSDDFMSLPLEENIFEWQFAIRGPGDTEFEGGIYHGRIQLPAEYPFK 73
           KRI++E +++ S+P     + P ++N+  +Q  I GP  + +E GI+   + LP +YP +
Sbjct: 6   KRIIKETEKLVSDPVPGITAEPHDDNLRYFQVTIEGPEQSPYEDGIFELELYLPDDYPME 65
Query: 74  PPSFMLLTVRCCSLMEHKSYCLCADYGVRTNVCAFFPPQPNGRFETQTKICLSISNHHPE 133
            P    LT         K Y                   PN   +   +ICL +      
Sbjct: 66  APKVRFLT---------KIY------------------HPN--IDRLGRICLDVLK---T 93
Query: 134 HWQPSWSVRTALVALIAFMPT-NPNGALG---SLDYKKEERRALAIKSRE 179
           +W P+  +RT L+++ A + + NPN  L    + D+ K E+ A A K+RE
Sbjct: 94  NWSPALQIRTVLLSIQALLASPNPNDPLANDVAEDWIKNEQGAKA-KARE 142

>pdb|3BZH|A Chain A, Crystal Structure Of Human Ubiquitin-Conjugating Enzyme E2 E1 Length = 194

Iteration: 1
 Score = 57.4 bits (137), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 29/89 (32%), Positives = 48/89 (53%), Gaps = 1/89 (1%)
Query: 8   LKNPAVKRILQEVKEMQSNPSDDFMSLPLEENIFEWQFAIRGPGDTEFEGGIYHGRIQLP 67
           L + + KRI +E+ ++  +P  +  + P  +NI+EW+  I GP  + +EGG++   I   
Sbjct: 45  LLSTSAKRIQKELADITLDPPPNCSAGPKGDNIYEWRSTILGPPGSVYEGGVFFLDITFT 104
Query: 68  AEYPFKPPSFMLLT-VRCCSLMEHKSYCL 95
            EYPFKPP     T +  C++      CL
Sbjct: 105 PEYPFKPPKVTFRTRIYHCNINSQGVICL 133

>pdb|1Y6L|A Chain A, Human Ubiquitin Conjugating Enzyme E2e2 Length = 149

Iteration: 1
 Score = 57.0 bits (136), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 28/85 (32%), Positives = 46/85 (54%), Gaps = 1/85 (1%)
Query: 12 AVKRILQEVKEMQSNPSDDFMSLPLEENIFEWQFAIRGPGDTEFEGGIYHGRIQLPAEYP 71
          + KRI +E+ E+  +P  +  + P  +NI+EW+  I GP  + +EGG++   I    +YP
Sbjct: 4  SAKRIQKELAEITLDPPPNCSAGPKGDNIYEWRSTILGPPGSVYEGGVFFLDITFSPDYP 63
Query: 72 FKPPSFMLLT-VRCCSLMEHKSYCL 95
          FKPP     T +  C++      CL
Sbjct: 64 FKPPKVTFRTRIYHCNINSQGVICL 88

>pdb|2AWF|A Chain A, Structure Of Human Ubiquitin-Conjugating Enzyme E2 G1 Length = 172

Iteration: 1
 Score = 55.8 bits (133), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 35/156 (22%), Positives = 75/156 (48%), Gaps = 24/156 (15%)
Query: 18  QEVKEMQSNPSDDFMSLPLEEN-IFEWQFAIRGPGDTEFEGGIYHGRIQLPAEYPFKPPS 76
           +++ E+  NP + F +  +++N ++ W+  I GP DT +EGG++   +  P +YP +PP 
Sbjct: 24  RQLAELNKNPVEGFSAGLIDDNDLYRWEVLIIGPPDTLYEGGVFKAHLTFPKDYPLRPPK 83
Query: 77  FMLLT-VRCCSLMEHKSYCLCADYGVRTNVCAFFPPQPNGRFETQTKICLSISNHHPEHW 135
              +T +   ++ ++   C+   +    +   +  P+                    E W
Sbjct: 84  MKFITEIWHPNVDKNGDVCISILHEPGEDKYGYEKPE--------------------ERW 123
Query: 136 QPSWSVRTALVALIAFMPTNPNG-ALGSLDYKKEER 170
            P  +V T ++++I+ +  +PNG +  ++D  KE R
Sbjct: 124 LPIHTVETIMISVISML-ADPNGDSPANVDAAKEWR 158

>pdb|2E2C|A Chain A, E2-C, An Ubiquitin Conjugating Enzyme Required For The Destruction Of Mitotic Cyclins Length = 156

Iteration: 1
 Score = 55.8 bits (133), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 38/146 (26%), Positives = 62/146 (42%), Gaps = 33/146 (22%)
Query: 14  KRILQEVKEMQSNPSDDFMSLPLEENIFEWQFAIRGPGDTEFEGGIYHGRIQLPAEYPFK 73
           KR+ QE++ +  +      + P  +N+F+W   + GP DT +E   Y   ++ P++YP+K
Sbjct: 12  KRLQQELRTLLMSGDPGITAFPDGDNLFKWVATLDGPKDTVYESLKYKLTLEFPSDYPYK 71
Query: 74  PPSFMLLTVRCCSLMEHKSYCLCADYGVRTNVCAFFPPQPNGRFETQTKICLSISNHHPE 133
           PP                             V  F  P  +   +    ICL I     E
Sbjct: 72  PP-----------------------------VVKFTTPCWHPNVDQSGNICLDILK---E 99
Query: 134 HWQPSWSVRTALVALIAFMPTNPNGA 159
           +W  S+ VRT L++L + +   PN A
Sbjct: 100 NWTASYDVRTILLSLQSLL-GEPNNA 124

>pdb|2PWQ|A Chain A, Crystal Structure Of A Putative Ubiquitin Conjugating Enzyme From Plasmodium Yoelii Length = 216

Iteration: 1
 Score = 55.5 bits (132), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 54/210 (25%), Positives = 96/210 (45%), Gaps = 42/210 (20%)
Query: 3   EDRYNLKNPAVKRILQEVKEMQSNPSDDFMSLPLEENIFEWQFAIRGPGDTEFEGGIYHG 62
           E+ Y   +  + R+ +E+K++++    +  +   + N FEW   I+GP  T +EGG +  
Sbjct: 15  ENLYFQGSKELLRLQKELKDIENENVQEIDAHIKDSNFFEWVGFIKGPEGTPYEGGHFTL 74
Query: 63  RIQLPAEYPFKPPSFMLLTVRCCSLMEHKSYCLCADYGVRTNVCAFFPPQPNGRFETQTK 122
            I +P +YP+ PP      ++  + + H                      PN   +T   
Sbjct: 75  AITIPNDYPYNPPK-----IKFVTKIWH----------------------PNISSQTGA- 106
Query: 123 ICLSISNHHPEHWQPSWSVRTALVALIAFM----PTNPNGALGSLDYKKEERRALAIKSR 178
           ICL +  +    W P+ ++RTAL+++ A +    P +P  A  +  YK  E  AL +K+ 
Sbjct: 107 ICLDVLKN---EWSPALTIRTALLSIQALLSDPQPDDPQDAEVAKMYK--ENHALFVKTA 161
Query: 179 EAAPK-FGT-PE---RQKLIDEIHEYMLSK 203
               K F T P+   R+ +I +I E   S+
Sbjct: 162 SVWTKTFATGPKEEPREVIIKKITEMGFSE 191

>pdb|1AYZ|A Chain A, Crystal Structure Of The Saccharomyces Cerevisiae Ubiquitin- Conjugating Enzyme Rad6 (Ubc2) At 2.6a Resolution Length = 169

Iteration: 1
 Score = 53.9 bits (128), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 42/152 (27%), Positives = 67/152 (44%), Gaps = 33/152 (21%)
Query: 8   LKNPAVKRILQEVKEMQSNPSDDFMSLPLEENIFEWQFAIRGPGDTEFEGGIYHGRIQLP 67
           +  PA +R++++ K M+ +      + PL +N+  W   I GP DT +E G +   ++  
Sbjct: 1   MSTPARRRLMRDFKRMKEDAPPGVSASPLPDNVMVWNAMIIGPADTPYEDGTFRLLLEFD 60
Query: 68  AEYPFKPPSFMLLTVRCCSLMEHKSYCLCADYGVRTNVCAFFPPQPNGRFETQTKICLSI 127
            EYP KPP      V+  S M H             NV A      NG      +ICL I
Sbjct: 61  EEYPNKPPH-----VKFLSEMFHP------------NVYA------NG------EICLDI 91
Query: 128 SNHHPEHWQPSWSVRTALVALIAFMPTNPNGA 159
             +    W P++ V + L ++ +    +PN A
Sbjct: 92  LQN---RWTPTYDVASILTSIQSLF-NDPNPA 119

>pdb|2GMI|A Chain A, Mms2UBC13~UBIQUITIN Length = 152

Iteration: 1
 Score = 53.9 bits (128), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 46/170 (27%), Positives = 78/170 (45%), Gaps = 37/170 (21%)
Query: 14  KRILQEVKEMQSNPSDDFMSLPLEENIFEWQFAIRGPGDTEFEGGIYHGRIQLPAEYPFK 73
           KRI++E +++ S+P     + P ++N+  +Q  I GP  + +E GI+   + LP +YP +
Sbjct: 6   KRIIKETEKLVSDPVPGITAEPHDDNLRYFQVTIEGPEQSPYEDGIFELELYLPDDYPME 65
Query: 74  PPSFMLLTVRCCSLMEHKSYCLCADYGVRTNVCAFFPPQPNGRFETQTKICLSISNHHPE 133
            P    LT         K Y                   PN   +   +I L +      
Sbjct: 66  APKVRFLT---------KIY------------------HPN--IDRLGRISLDVLK---T 93
Query: 134 HWQPSWSVRTALVALIAFMPT-NPNGALG---SLDYKKEERRALAIKSRE 179
           +W P+  +RT L+++ A + + NPN  L    + D+ K E+ A A K+RE
Sbjct: 94  NWSPALQIRTVLLSIQALLASPNPNDPLANDVAEDWIKNEQGAKA-KARE 142

>pdb|3E46|A Chain A, Crystal Structure Of Ubiquitin-Conjugating Enzyme E2-25kda (Huntington Interacting Protein 2) M172a Mutant Length = 253

Iteration: 1
 Score = 53.5 bits (127), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 32/96 (33%), Positives = 50/96 (52%), Gaps = 3/96 (3%)
Query: 6   YNLKNPAVKRILQEVKEM--QSNPSDDFMSLPL-EENIFEWQFAIRGPGDTEFEGGIYHG 62
           +++ N AV+RI +E KE+      S + + + L +EN  E +  I GP DT +EGG Y  
Sbjct: 52  FDMANIAVQRIKREFKEVLKSEETSKNQIKVDLVDENFTELRGEIAGPPDTPYEGGRYQL 111
Query: 63  RIQLPAEYPFKPPSFMLLTVRCCSLMEHKSYCLCAD 98
            I++P  YPF PP    +T      +   +  +C D
Sbjct: 112 EIKIPETYPFNPPKVRFITKIWHPNISSVTGAICLD 147

>pdb|4FH1|A Chain A, S. Cerevisiae Ubc13-N79a Length = 153

Iteration: 1
 Score = 53.1 bits (126), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 46/170 (27%), Positives = 76/170 (44%), Gaps = 37/170 (21%)
Query: 14  KRILQEVKEMQSNPSDDFMSLPLEENIFEWQFAIRGPGDTEFEGGIYHGRIQLPAEYPFK 73
           KRI++E +++ S+P     + P ++N+  +Q  I GP  + +E GI+   + LP +YP +
Sbjct: 6   KRIIKETEKLVSDPVPGITAEPHDDNLRYFQVTIEGPEQSPYEDGIFELELYLPDDYPME 65
Query: 74  PPSFMLLTVRCCSLMEHKSYCLCADYGVRTNVCAFFPPQPNGRFETQTKICLSISNHHPE 133
            P    LT         K Y    D   R                    I L +      
Sbjct: 66  APKVRFLT---------KIYHPAIDRLGR--------------------ISLDVLK---T 93
Query: 134 HWQPSWSVRTALVALIAFMPT-NPNGALG---SLDYKKEERRALAIKSRE 179
           +W P+  +RT L+++ A + + NPN  L    + D+ K E+ A A K+RE
Sbjct: 94  NWSPALQIRTVLLSIQALLASPNPNDPLANDVAEDWIKNEQGAKA-KARE 142

>pdb|3K9P|A Chain A, The Crystal Structure Of E2-25k And Ubiquitin Complex Length = 217

Iteration: 1
 Score = 52.8 bits (125), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 33/97 (34%), Positives = 50/97 (51%), Gaps = 3/97 (3%)
Query: 5   RYNLKNPAVKRILQEVKEM--QSNPSDDFMSLPL-EENIFEWQFAIRGPGDTEFEGGIYH 61
           R ++ N AV+RI +E KE+      S + + + L +EN  E +  I GP DT +EGG Y 
Sbjct: 15  RGSMANIAVQRIKREFKEVLKSEETSKNQIKVDLVDENFTELRGEIAGPPDTPYEGGRYQ 74
Query: 62  GRIQLPAEYPFKPPSFMLLTVRCCSLMEHKSYCLCAD 98
             I++P  YPF PP    +T      +   +  +C D
Sbjct: 75  LEIKIPETYPFNPPKVRFITKIWHPNISSVTGAICLD 111

>pdb|2BEP|A Chain A, Crystal Structure Of Ubiquitin Conjugating Enzyme E2-25k Length = 159

Iteration: 1
 Score = 51.6 bits (122), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 32/94 (34%), Positives = 48/94 (51%), Gaps = 3/94 (3%)
Query: 8  LKNPAVKRILQEVKEM--QSNPSDDFMSLPL-EENIFEWQFAIRGPGDTEFEGGIYHGRI 64
          + N AV+RI +E KE+      S + + + L +EN  E +  I GP DT +EGG Y   I
Sbjct: 5  MANIAVQRIKREFKEVLKSEETSKNQIKVDLVDENFTELRGEIAGPPDTPYEGGRYQLEI 64
Query: 65 QLPAEYPFKPPSFMLLTVRCCSLMEHKSYCLCAD 98
          ++P  YPF PP    +T      +   +  +C D
Sbjct: 65 KIPETYPFNPPKVRFITKIWHPNISSVTGAICLD 98

>pdb|1YLA|A Chain A, Ubiquitin-Conjugating Enzyme E2-25 Kda (Huntington Interacting Protein 2) Length = 202

Iteration: 1
 Score = 51.6 bits (122), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 32/95 (33%), Positives = 49/95 (51%), Gaps = 3/95 (3%)
Query: 7  NLKNPAVKRILQEVKEM--QSNPSDDFMSLPL-EENIFEWQFAIRGPGDTEFEGGIYHGR 63
          ++ N AV+RI +E KE+      S + + + L +EN  E +  I GP DT +EGG Y   
Sbjct: 2  SMANIAVQRIKREFKEVLKSEETSKNQIKVDLVDENFTELRGEIAGPPDTPYEGGRYQLE 61
Query: 64 IQLPAEYPFKPPSFMLLTVRCCSLMEHKSYCLCAD 98
          I++P  YPF PP    +T      +   +  +C D
Sbjct: 62 IKIPETYPFNPPKVRFITKIWHPNISSVTGAICLD 96

>pdb|2UCZ|A Chain A, Ubiquitin Conjugating Enzyme (Ubc7) From Saccharomyces Cerevisiae Length = 165

Iteration: 1
 Score = 51.6 bits (122), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 41/163 (25%), Positives = 72/163 (44%), Gaps = 43/163 (26%)
Query: 12  AVKRILQEVKEMQSNPSDDFMSLPL-EENIFEWQFAIRGPGDTEFEGGIYHGRIQLPAEY 70
           A KR+L+E++++  +     ++ P  E NIF W   I+GP DT +  G+++ +++ P +Y
Sbjct: 5   AQKRLLKELQQLIKDSPPGIVAGPKSENNIFIWDCLIQGPPDTPYADGVFNAKLEFPKDY 64
Query: 71  PFKPPSFMLLTVRCCSLMEHKSYCLCADYGVRTNVCAFFPPQPNGRFETQTKICLSISNH 130
           P  PP          S++    Y                   PNG      ++C+SI  H
Sbjct: 65  PLSPPKLTFTP----SILHPNIY-------------------PNG------EVCISIL-H 94
Query: 131 HP-----------EHWQPSWSVRTALVALIAFMPTNPNGALGS 162
            P           E W P  SV   L+++++ + + PN   G+
Sbjct: 95  SPGDDPNMYELAEERWSPVQSVEKILLSVMSML-SEPNIESGA 136

>pdb|3K9O|A Chain A, The Crystal Structure Of E2-25k And Ubb+1 Complex Length = 201

Iteration: 1
 Score = 51.2 bits (121), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 32/94 (34%), Positives = 48/94 (51%), Gaps = 3/94 (3%)
Query: 8  LKNPAVKRILQEVKEM--QSNPSDDFMSLPL-EENIFEWQFAIRGPGDTEFEGGIYHGRI 64
          + N AV+RI +E KE+      S + + + L +EN  E +  I GP DT +EGG Y   I
Sbjct: 2  MANIAVQRIKREFKEVLKSEETSKNQIKVDLVDENFTELRGEIAGPPDTPYEGGRYQLEI 61
Query: 65 QLPAEYPFKPPSFMLLTVRCCSLMEHKSYCLCAD 98
          ++P  YPF PP    +T      +   +  +C D
Sbjct: 62 KIPETYPFNPPKVRFITKIWHPNISSVTGAICLD 95

>pdb|2C2V|B Chain B, Crystal Structure Of The Chip-Ubc13-Uev1a Complex Length = 154

Iteration: 1
 Score = 51.2 bits (121), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 39/150 (26%), Positives = 62/150 (41%), Gaps = 33/150 (22%)
Query: 14  KRILQEVKEMQSNPSDDFMSLPLEENIFEWQFAIRGPGDTEFEGGIYHGRIQLPAEYPFK 73
           +RI++E + + + P     + P E N   +   I GP D+ FEGG +   + LP EYP  
Sbjct: 8   RRIIKETQRLLAEPVPGIKAEPDESNARYFHVVIAGPQDSPFEGGTFKLELFLPEEYPMA 67
Query: 74  PPSFMLLTVRCCSLMEHKSYCLCADYGVRTNVCAFFPPQPNGRFETQTKICLSISNHHPE 133
            P    +T         K Y                   PN   +   +ICL I     +
Sbjct: 68  APKVRFMT---------KIY------------------HPN--VDKLGRICLDILK---D 95
Query: 134 HWQPSWSVRTALVALIAFMPT-NPNGALGS 162
            W P+  +RT L+++ A +   NP+  L +
Sbjct: 96  KWSPALQIRTVLLSIQALLSAPNPDDPLAN 125

>pdb|1J7D|B Chain B, Crystal Structure Of Hmms2-Hubc13 Length = 152

Iteration: 1
 Score = 51.2 bits (121), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 39/150 (26%), Positives = 62/150 (41%), Gaps = 33/150 (22%)
Query: 14  KRILQEVKEMQSNPSDDFMSLPLEENIFEWQFAIRGPGDTEFEGGIYHGRIQLPAEYPFK 73
           +RI++E + + + P     + P E N   +   I GP D+ FEGG +   + LP EYP  
Sbjct: 6   RRIIKETQRLLAEPVPGIKAEPDESNARYFHVVIAGPQDSPFEGGTFKLELFLPEEYPMA 65
Query: 74  PPSFMLLTVRCCSLMEHKSYCLCADYGVRTNVCAFFPPQPNGRFETQTKICLSISNHHPE 133
            P    +T         K Y                   PN   +   +ICL I     +
Sbjct: 66  APKVRFMT---------KIY------------------HPN--VDKLGRICLDILK---D 93
Query: 134 HWQPSWSVRTALVALIAFMPT-NPNGALGS 162
            W P+  +RT L+++ A +   NP+  L +
Sbjct: 94  KWSPALQIRTVLLSIQALLSAPNPDDPLAN 123

>pdb|3HCT|B Chain B, Crystal Structure Of Traf6 In Complex With Ubc13 In The P1 Space Group Length = 155

Iteration: 1
 Score = 50.8 bits (120), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 39/150 (26%), Positives = 62/150 (41%), Gaps = 33/150 (22%)
Query: 14  KRILQEVKEMQSNPSDDFMSLPLEENIFEWQFAIRGPGDTEFEGGIYHGRIQLPAEYPFK 73
           +RI++E + + + P     + P E N   +   I GP D+ FEGG +   + LP EYP  
Sbjct: 9   RRIIKETQRLLAEPVPGIKAEPDESNARYFHVVIAGPQDSPFEGGTFKLELFLPEEYPMA 68
Query: 74  PPSFMLLTVRCCSLMEHKSYCLCADYGVRTNVCAFFPPQPNGRFETQTKICLSISNHHPE 133
            P    +T         K Y                   PN   +   +ICL I     +
Sbjct: 69  APKVRFMT---------KIY------------------HPN--VDKLGRICLDILK---D 96
Query: 134 HWQPSWSVRTALVALIAFMPT-NPNGALGS 162
            W P+  +RT L+++ A +   NP+  L +
Sbjct: 97  KWSPALQIRTVLLSIQALLSAPNPDDPLAN 126

>pdb|3VON|C Chain C, Crystalstructure Of The Ubiquitin Protease Length = 148

Iteration: 1
 Score = 50.8 bits (120), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 39/150 (26%), Positives = 62/150 (41%), Gaps = 33/150 (22%)
Query: 14  KRILQEVKEMQSNPSDDFMSLPLEENIFEWQFAIRGPGDTEFEGGIYHGRIQLPAEYPFK 73
           +RI++E + + + P     + P E N   +   I GP D+ FEGG +   + LP EYP  
Sbjct: 4   RRIIKETQRLLAEPVPGIKAEPDESNARYFHVVIAGPQDSPFEGGTFKLELFLPEEYPMA 63
Query: 74  PPSFMLLTVRCCSLMEHKSYCLCADYGVRTNVCAFFPPQPNGRFETQTKICLSISNHHPE 133
            P    +T         K Y                   PN   +   +ICL I     +
Sbjct: 64  APKVRFMT---------KIY------------------HPN--VDKLGRICLDILK---D 91
Query: 134 HWQPSWSVRTALVALIAFMPT-NPNGALGS 162
            W P+  +RT L+++ A +   NP+  L +
Sbjct: 92  KWSPALQIRTVLLSIQALLSAPNPDDPLAN 121

>pdb|4EPO|B Chain B, Crystal Structure Of Rnf8 Bound To The Ubc13MMS2 HETERODIMER Length = 155

Iteration: 1
 Score = 50.8 bits (120), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 39/150 (26%), Positives = 62/150 (41%), Gaps = 33/150 (22%)
Query: 14  KRILQEVKEMQSNPSDDFMSLPLEENIFEWQFAIRGPGDTEFEGGIYHGRIQLPAEYPFK 73
           +RI++E + + + P     + P E N   +   I GP D+ FEGG +   + LP EYP  
Sbjct: 11  RRIIKETQRLLAEPVPGIKAEPDESNARYFHVVIAGPQDSPFEGGTFKLELFLPEEYPMA 70
Query: 74  PPSFMLLTVRCCSLMEHKSYCLCADYGVRTNVCAFFPPQPNGRFETQTKICLSISNHHPE 133
            P    +T         K Y                   PN   +   +ICL I     +
Sbjct: 71  APKVRFMT---------KIY------------------HPN--VDKLGRICLDILK---D 98
Query: 134 HWQPSWSVRTALVALIAFMPT-NPNGALGS 162
            W P+  +RT L+++ A +   NP+  L +
Sbjct: 99  KWSPALQIRTVLLSIQALLSAPNPDDPLAN 128

>pdb|1PZV|A Chain A, Crystal Structures Of Two Ubc (E2) Enzymes Of The Ubiquitin- Conjugating System In Caenorhabditis Elegans Length = 164

Iteration: 1
 Score = 50.8 bits (120), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 45/177 (25%), Positives = 81/177 (45%), Gaps = 44/177 (24%)
Query: 18  QEVKEMQSNPSDDFMSLPLEEN-IFEWQFAIRGPGDTEFEGGIYHGRIQLPAEYPFKPPS 76
           +++ +M+  P D F +  +++N I++W+  + GP DT +EGG +   +  P +YP KPP 
Sbjct: 10  KQLADMRRVPVDGFSAGLVDDNDIYKWEVLVIGPPDTLYEGGFFKAILDFPRDYPQKPPK 69
Query: 77  FMLLTVRCCSLMEHKSYCLCADYGVRTNVCAFFPPQPNGRFETQTKICLSISNHHP---- 132
                ++  S + H                      PN   + +  +C+SI  H P    
Sbjct: 70  -----MKFISEIWH----------------------PN--IDKEGNVCISIL-HDPGDDK 99
Query: 133 -------EHWQPSWSVRTALVALIAFMPTNPN-GALGSLDYKKEERRALAIKSREAA 181
                  E W P  +V T L+++I+ M T+PN  +  ++D  K +R   A   ++ A
Sbjct: 100 WGYERPEERWLPVHTVETILLSVIS-MLTDPNFESPANVDAAKMQRENYAEFKKKVA 155

>pdb|3SQV|C Chain C, Crystal Structure Of E. Coli O157:h7 E3 Ubiquitin Ligase, Nlel, With A Human E2, Ubch7 Length = 156

Iteration: 1
 Score = 50.1 bits (118), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 44/179 (24%), Positives = 81/179 (45%), Gaps = 38/179 (21%)
Query: 12  AVKRILQEVKEMQSNPSDDFMSLPLEE-NIFEWQFAIRGPGDTEFEGGIYHGRIQLPAEY 70
           A +R+++E++E++     +F ++ ++E N+  WQ  I  P +  ++ G +   I  PAEY
Sbjct: 5   ASRRLMKELEEIRKCGMKNFRNIQVDEANLLTWQGLI-VPDNPPYDKGAFRIEINFPAEY 63
Query: 71  PFKPPSFMLLTVRCCSLMEHKSYCLCADYGVRTNVCAFFPPQPNGRFETQTKICLSISNH 130
           PFKPP     T         K Y                   PN   + + ++CL + + 
Sbjct: 64  PFKPPKITFKT---------KIY------------------HPN--IDEKGQVCLPVISA 94
Query: 131 HPEHWQPSWSVRTALVALIAFM----PTNPNGALGSLDYKKEERRALAIKSREAAPKFG 185
             E+W+P+      + +LIA +    P +P  A  + +Y K +R+     + E   K+G
Sbjct: 95  --ENWKPATKTDQVIQSLIALVNDPQPEHPLRADLAEEYSK-DRKKFCKNAEEFTKKYG 150

>pdb|1C4Z|D Chain D, Structure Of E6ap: Insights Into Ubiquitination Pathway Length = 154

Iteration: 1
 Score = 50.1 bits (118), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 44/179 (24%), Positives = 81/179 (45%), Gaps = 38/179 (21%)
Query: 12  AVKRILQEVKEMQSNPSDDFMSLPLEE-NIFEWQFAIRGPGDTEFEGGIYHGRIQLPAEY 70
           A +R+++E++E++     +F ++ ++E N+  WQ  I  P +  ++ G +   I  PAEY
Sbjct: 3   ASRRLMKELEEIRKCGMKNFRNIQVDEANLLTWQGLI-VPDNPPYDKGAFRIEINFPAEY 61
Query: 71  PFKPPSFMLLTVRCCSLMEHKSYCLCADYGVRTNVCAFFPPQPNGRFETQTKICLSISNH 130
           PFKPP     T         K Y                   PN   + + ++CL + + 
Sbjct: 62  PFKPPKITFKT---------KIY------------------HPN--IDEKGQVCLPVISA 92
Query: 131 HPEHWQPSWSVRTALVALIAFM----PTNPNGALGSLDYKKEERRALAIKSREAAPKFG 185
             E+W+P+      + +LIA +    P +P  A  + +Y K +R+     + E   K+G
Sbjct: 93  --ENWKPATKTDQVIQSLIALVNDPQPEHPLRADLAEEYSK-DRKKFCKNAEEFTKKYG 148

>pdb|1FXT|A Chain A, Structure Of A Conjugating Enzyme-Ubiquitin Thiolester Complex Length = 149

Iteration: 1
 Score = 47.8 bits (112), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 42/160 (26%), Positives = 69/160 (43%), Gaps = 36/160 (22%)
Query: 14  KRILQEVKEMQSNPSDDF-MSLPLEENIFEWQFAIRGPGDTEFEGGIYHGRIQLPAEYPF 72
           KRI++E++ ++ +P+    +    E +I   +    GP  T +EGG +   I++P EYPF
Sbjct: 4   KRIMKEIQAVKDDPAAHITLEFVSESDIHHLKGTFLGPPGTPYEGGKFVVDIEVPMEYPF 63
Query: 73  KPPSFMLLTVRCCSLMEHKSYCLCADYGVRTNVCAFFPPQPNGRFETQTKICLSISNHHP 132
           KPP     T         K Y                   PN    T   ICL I  +  
Sbjct: 64  KPPKMQFDT---------KVY------------------HPNISSVTGA-ICLDILKN-- 93
Query: 133 EHWQPSWSVRTALVALIAFM----PTNPNGALGSLDYKKE 168
             W P  ++++AL++L A +    P +P  A  +  Y ++
Sbjct: 94  -AWSPVITLKSALISLQALLQSPEPNDPQDAEVAQHYLRD 132

>pdb|1TTE|A Chain A, The Structure Of A Class Ii Ubiquitin-Conjugating Enzyme, Ubc1 Length = 215

Iteration: 1
 Score = 47.8 bits (112), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 41/151 (27%), Positives = 65/151 (43%), Gaps = 36/151 (23%)
Query: 14  KRILQEVKEMQSNPSDDF-MSLPLEENIFEWQFAIRGPGDTEFEGGIYHGRIQLPAEYPF 72
           KRI++E++ ++ +P+    +    E +I   +    GP  T +EGG +   I++P EYPF
Sbjct: 5   KRIMKEIQAVKDDPAAHITLEFVSESDIHHLKGTFLGPPGTPYEGGKFVVDIEVPMEYPF 64
Query: 73  KPPSFMLLTVRCCSLMEHKSYCLCADYGVRTNVCAFFPPQPNGRFETQTKICLSISNHHP 132
           KPP     T         K Y                   PN    T   ICL I  +  
Sbjct: 65  KPPKMQFDT---------KVY------------------HPNISSVTGA-ICLDILRN-- 94
Query: 133 EHWQPSWSVRTALVALIAFM----PTNPNGA 159
             W P  ++++AL++L A +    P +P  A
Sbjct: 95  -AWSPVITLKSALISLQALLQSPEPNDPQDA 124

>pdb|1ZDN|A Chain A, Ubiquitin-Conjugating Enzyme E2s Length = 158

Iteration: 1
 Score = 47.8 bits (112), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 23/81 (28%), Positives = 41/81 (50%)
Query: 1  MAEDRYNLKNPAVKRILQEVKEMQSNPSDDFMSLPLEENIFEWQFAIRGPGDTEFEGGIY 60
          M  +  NL    ++ + +EV  + ++P D     P EE++ + Q  I GP  T + GG++
Sbjct: 3  MNSNVENLPPHIIRLVYKEVTTLTADPPDGIKVFPNEEDLTDLQVTIEGPEGTPYAGGLF 62
Query: 61 HGRIQLPAEYPFKPPSFMLLT 81
            ++ L  ++P  PP    LT
Sbjct: 63 RMKLLLGKDFPASPPKGYFLT 83

>pdb|2F4Z|A Chain A, Toxoplasma Gondii Ubiquitin Conjugating Enzyme Tgtwinscan_2721- E2 Domain Length = 193

Iteration: 1
 Score = 46.2 bits (108), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 36/125 (28%), Positives = 54/125 (43%), Gaps = 35/125 (28%)
Query: 39  NIFEWQFAIRGPGDTEFEGGIYHGRIQLPAEYPFKPPSFMLLTVRCCSLMEHKSYCLCAD 98
           +I  W+  I GP  T +EGG +   I +P +YP+ PP    +T         K +     
Sbjct: 73  DIHRWRGFIAGPLGTPYEGGHFTLDIVIPPDYPYNPPKMKFVT---------KIW----- 118
Query: 99  YGVRTNVCAFFPPQPNGRFETQTKICLSISNHHPEHWQPSWSVRTALVALIAFM----PT 154
                         PN   +T   ICL I  H    W P+ ++RTAL+++ A +    PT
Sbjct: 119 -------------HPNISSQTGA-ICLDILKH---EWSPALTIRTALLSIQAMLADPVPT 161
Query: 155 NPNGA 159
           +P  A
Sbjct: 162 DPQDA 166

>pdb|1I7K|A Chain A, Crystal Structure Of Human Mitotic-Specific Ubiquitin- Conjugating Enzyme, Ubch10 Length = 179

Iteration: 1
 Score = 45.1 bits (105), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 34/144 (23%), Positives = 56/144 (38%), Gaps = 32/144 (22%)
Query: 9   KNPAVKRILQEVKEMQSNPSDDFMSLPLEENIFEWQFAIRGPGDTEFEGGIYHGRIQLPA 68
           + P  KR+ QE+  +  +      + P  +N+F+W   I G   T +E   Y   ++ P+
Sbjct: 28  RGPVGKRLQQELMTLMMSGDKGISAFPESDNLFKWVGTIHGAAGTVYEDLRYKLSLEFPS 87
Query: 69  EYPFKPPSFMLLTVRCCSLMEHKSYCLCADYGVRTNVCAFFPPQPNGRFETQTKICLSIS 128
            YP+  P+   LT            C                  PN   +TQ  I L I 
Sbjct: 88  GYPYNAPTVKFLTP-----------CY----------------HPN--VDTQGNISLDIL 118
Query: 129 NHHPEHWQPSWSVRTALVALIAFM 152
               E W   + VRT L+++ + +
Sbjct: 119 K---EKWSALYDVRTILLSIQSLL 139

>pdb|3RCZ|B Chain B, Rad60 Sld2 Ubc9 Complex Length = 163

Iteration: 1
 Score = 45.1 bits (105), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 43/182 (23%), Positives = 73/182 (40%), Gaps = 46/182 (25%)
Query: 15  RILQEVKEMQSNPSDDFMSLPLEE-----NIFEWQFAIRGPGDTEFEGGIYHGRIQLPAE 69
           R+ +E K+ + +    F + P +      ++  W+  I G   T +EGG+Y   +  P E
Sbjct: 14  RLQEERKQWRRDHPFGFYAKPCKSSDGGLDLMNWKVGIPGKPKTSWEGGLYKLTMAFPEE 73
Query: 70  YPFKPPSFMLLTVRCCSLMEHKSYCLCADYGVRTNVCAFFPPQPNGRFETQTKICLSISN 129
           YP +PP                              C F PP  +        +CLSI N
Sbjct: 74  YPTRPPK-----------------------------CRFTPPLFHPNVYPSGTVCLSILN 104
Query: 130 HHPEHWQPSWSVRTALVALIAFMPTNPNGA---------LGSLDYKKEERRALAIKSREA 180
              E W+P+ +++  L+ +   +  +PN A         +   D  + E+R  A ++RE 
Sbjct: 105 EE-EGWKPAITIKQILLGIQDLL-DDPNIASPAQTEAYTMFKKDKVEYEKRVRA-QAREN 161
Query: 181 AP 182
           AP
Sbjct: 162 AP 163

>pdb|1U9A|A Chain A, Human Ubiquitin-Conjugating Enzyme Ubc9 Length = 160

Iteration: 1
 Score = 43.5 bits (101), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 33/147 (22%), Positives = 59/147 (40%), Gaps = 35/147 (23%)
Query: 7   NLKNPAVKRILQEVKEMQSNPSDDFMSLPLEE-----NIFEWQFAIRGPGDTEFEGGIYH 61
           N+   A+ R+ QE K  + +    F+++P +      N+  W+ AI G   T +EGG++ 
Sbjct: 2   NMSGIALSRLAQERKAWRKDHPFGFVAVPTKNPDGTMNLMNWECAIPGKKGTPWEGGLFK 61
Query: 62  GRIQLPAEYPFKPPSFMLLTVRCCSLMEHKSYCLCADYGVRTNVCAFFPPQPNGRFETQT 121
            R+    +YP  PP                              C F PP  +       
Sbjct: 62  LRMLFKDDYPSSPPK-----------------------------CKFEPPLFHPNVYPSG 92
Query: 122 KICLSISNHHPEHWQPSWSVRTALVAL 148
            +CLSI     + W+P+ +++  L+ +
Sbjct: 93  TVCLSILEED-KDWRPAITIKQILLGI 118

>pdb|2GRO|A Chain A, Crystal Structure Of Human Rangap1-Ubc9-N85q Length = 161

Iteration: 1
 Score = 42.4 bits (98), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 32/142 (22%), Positives = 58/142 (40%), Gaps = 35/142 (24%)
Query: 12  AVKRILQEVKEMQSNPSDDFMSLPLEE-----NIFEWQFAIRGPGDTEFEGGIYHGRIQL 66
           A+ R+ QE K  + +    F+++P +      N+  W+ AI G   T +EGG++  R+  
Sbjct: 8   ALSRLAQERKAWRKDHPFGFVAVPTKNPDGTMNLMNWECAIPGKKGTPWEGGLFKLRMLF 67
Query: 67  PAEYPFKPPSFMLLTVRCCSLMEHKSYCLCADYGVRTNVCAFFPPQPNGRFETQTKICLS 126
             +YP  PP                              C F PP  + +      +CLS
Sbjct: 68  KDDYPSSPPK-----------------------------CKFEPPLFHPQVYPSGTVCLS 98
Query: 127 ISNHHPEHWQPSWSVRTALVAL 148
           I     + W+P+ +++  L+ +
Sbjct: 99  ILEED-KDWRPAITIKQILLGI 119

>pdb|2GRP|A Chain A, Crystal Structure Of Human Rangap1-Ubc9-Y87a Length = 161

Iteration: 1
 Score = 42.4 bits (98), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 32/142 (22%), Positives = 57/142 (40%), Gaps = 35/142 (24%)
Query: 12  AVKRILQEVKEMQSNPSDDFMSLPLEE-----NIFEWQFAIRGPGDTEFEGGIYHGRIQL 66
           A+ R+ QE K  + +    F+++P +      N+  W+ AI G   T +EGG++  R+  
Sbjct: 8   ALSRLAQERKAWRKDHPFGFVAVPTKNPDGTMNLMNWECAIPGKKGTPWEGGLFKLRMLF 67
Query: 67  PAEYPFKPPSFMLLTVRCCSLMEHKSYCLCADYGVRTNVCAFFPPQPNGRFETQTKICLS 126
             +YP  PP                              C F PP  +        +CLS
Sbjct: 68  KDDYPSSPPK-----------------------------CKFEPPLFHPNVAPSGTVCLS 98
Query: 127 ISNHHPEHWQPSWSVRTALVAL 148
           I     + W+P+ +++  L+ +
Sbjct: 99  ILEED-KDWRPAITIKQILLGI 119

>pdb|3A4S|A Chain A, The Crystal Structure Of The Sld2:ubc9 Complex Length = 163

Iteration: 1
 Score = 42.4 bits (98), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 32/142 (22%), Positives = 57/142 (40%), Gaps = 35/142 (24%)
Query: 12  AVKRILQEVKEMQSNPSDDFMSLPLEE-----NIFEWQFAIRGPGDTEFEGGIYHGRIQL 66
           A+ R+ QE K  + +    F+++P +      N+  W+ AI G   T +EGG++  R+  
Sbjct: 10  ALSRLAQERKAWRKDHPFGFVAVPTKNPDGTMNLMNWECAIPGKKGTPWEGGLFKLRMLF 69
Query: 67  PAEYPFKPPSFMLLTVRCCSLMEHKSYCLCADYGVRTNVCAFFPPQPNGRFETQTKICLS 126
             +YP  PP                              C F PP  +        +CLS
Sbjct: 70  KDDYPSSPPK-----------------------------CKFEPPLFHPNVYPSGTVCLS 100
Query: 127 ISNHHPEHWQPSWSVRTALVAL 148
           I     + W+P+ +++  L+ +
Sbjct: 101 ILEED-KDWRPAITIKQILLGI 121

>pdb|2O25|C Chain C, Ubiquitin-Conjugating Enzyme E2-25 Kda Complexed With Sumo-1- Conjugating Enzyme Ubc9 Length = 160

Iteration: 1
 Score = 42.0 bits (97), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 32/142 (22%), Positives = 57/142 (40%), Gaps = 35/142 (24%)
Query: 12  AVKRILQEVKEMQSNPSDDFMSLPLEE-----NIFEWQFAIRGPGDTEFEGGIYHGRIQL 66
           A+ R+ QE K  + +    F+++P +      N+  W+ AI G   T +EGG++  R+  
Sbjct: 7   ALSRLAQERKAWRKDHPFGFVAVPTKNPDGTMNLMNWECAIPGKKGTPWEGGLFKLRMLF 66
Query: 67  PAEYPFKPPSFMLLTVRCCSLMEHKSYCLCADYGVRTNVCAFFPPQPNGRFETQTKICLS 126
             +YP  PP                              C F PP  +        +CLS
Sbjct: 67  KDDYPSSPPK-----------------------------CKFEPPLFHPNVYPSGTVCLS 97
Query: 127 ISNHHPEHWQPSWSVRTALVAL 148
           I     + W+P+ +++  L+ +
Sbjct: 98  ILEED-KDWRPAITIKQILLGI 118

>pdb|1KPS|A Chain A, Structural Basis For E2-Mediated Sumo Conjugation Revealed By A Complex Between Ubiquitin Conjugating Enzyme Ubc9 And Rangap1 Length = 159

Iteration: 1
 Score = 42.0 bits (97), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 32/142 (22%), Positives = 57/142 (40%), Gaps = 35/142 (24%)
Query: 12  AVKRILQEVKEMQSNPSDDFMSLPLEE-----NIFEWQFAIRGPGDTEFEGGIYHGRIQL 66
           A+ R+ QE K  + +    F+++P +      N+  W+ AI G   T +EGG++  R+  
Sbjct: 6   ALSRLAQERKAWRKDHPFGFVAVPTKNPDGTMNLMNWECAIPGKKGTPWEGGLFKLRMLF 65
Query: 67  PAEYPFKPPSFMLLTVRCCSLMEHKSYCLCADYGVRTNVCAFFPPQPNGRFETQTKICLS 126
             +YP  PP                              C F PP  +        +CLS
Sbjct: 66  KDDYPSSPPK-----------------------------CKFEPPLFHPNVYPSGTVCLS 96
Query: 127 ISNHHPEHWQPSWSVRTALVAL 148
           I     + W+P+ +++  L+ +
Sbjct: 97  ILEED-KDWRPAITIKQILLGI 117

>pdb|1Z5S|A Chain A, Crystal Structure Of A Complex Between Ubc9, Sumo-1, Rangap1 And Nup358RANBP2 Length = 158

Iteration: 1
 Score = 42.0 bits (97), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 32/142 (22%), Positives = 57/142 (40%), Gaps = 35/142 (24%)
Query: 12  AVKRILQEVKEMQSNPSDDFMSLPLEE-----NIFEWQFAIRGPGDTEFEGGIYHGRIQL 66
           A+ R+ QE K  + +    F+++P +      N+  W+ AI G   T +EGG++  R+  
Sbjct: 5   ALSRLAQERKAWRKDHPFGFVAVPTKNPDGTMNLMNWECAIPGKKGTPWEGGLFKLRMLF 64
Query: 67  PAEYPFKPPSFMLLTVRCCSLMEHKSYCLCADYGVRTNVCAFFPPQPNGRFETQTKICLS 126
             +YP  PP                              C F PP  +        +CLS
Sbjct: 65  KDDYPSSPPK-----------------------------CKFEPPLFHPNVYPSGTVCLS 95
Query: 127 ISNHHPEHWQPSWSVRTALVAL 148
           I     + W+P+ +++  L+ +
Sbjct: 96  ILEED-KDWRPAITIKQILLGI 116

>pdb|2GRQ|A Chain A, Crystal Structure Of Human Rangap1-Ubc9-D127a Length = 161

Iteration: 1
 Score = 42.0 bits (97), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 32/142 (22%), Positives = 57/142 (40%), Gaps = 35/142 (24%)
Query: 12  AVKRILQEVKEMQSNPSDDFMSLPLEE-----NIFEWQFAIRGPGDTEFEGGIYHGRIQL 66
           A+ R+ QE K  + +    F+++P +      N+  W+ AI G   T +EGG++  R+  
Sbjct: 8   ALSRLAQERKAWRKDHPFGFVAVPTKNPDGTMNLMNWECAIPGKKGTPWEGGLFKLRMLF 67
Query: 67  PAEYPFKPPSFMLLTVRCCSLMEHKSYCLCADYGVRTNVCAFFPPQPNGRFETQTKICLS 126
             +YP  PP                              C F PP  +        +CLS
Sbjct: 68  KDDYPSSPPK-----------------------------CKFEPPLFHPNVYPSGTVCLS 98
Query: 127 ISNHHPEHWQPSWSVRTALVAL 148
           I     + W+P+ +++  L+ +
Sbjct: 99  ILEED-KDWRPAITIKQILLGI 119

>pdb|2GRR|A Chain A, Crystal Structure Of Human Rangap1-Ubc9-D127s Length = 161

Iteration: 1
 Score = 42.0 bits (97), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 32/142 (22%), Positives = 57/142 (40%), Gaps = 35/142 (24%)
Query: 12  AVKRILQEVKEMQSNPSDDFMSLPLEE-----NIFEWQFAIRGPGDTEFEGGIYHGRIQL 66
           A+ R+ QE K  + +    F+++P +      N+  W+ AI G   T +EGG++  R+  
Sbjct: 8   ALSRLAQERKAWRKDHPFGFVAVPTKNPDGTMNLMNWECAIPGKKGTPWEGGLFKLRMLF 67
Query: 67  PAEYPFKPPSFMLLTVRCCSLMEHKSYCLCADYGVRTNVCAFFPPQPNGRFETQTKICLS 126
             +YP  PP                              C F PP  +        +CLS
Sbjct: 68  KDDYPSSPPK-----------------------------CKFEPPLFHPNVYPSGTVCLS 98
Query: 127 ISNHHPEHWQPSWSVRTALVAL 148
           I     + W+P+ +++  L+ +
Sbjct: 99  ILEED-KDWRPAITIKQILLGI 119

>pdb|2GRN|A Chain A, Crystal Structure Of Human Rangap1-Ubc9 Length = 161

Iteration: 1
 Score = 42.0 bits (97), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 32/142 (22%), Positives = 57/142 (40%), Gaps = 35/142 (24%)
Query: 12  AVKRILQEVKEMQSNPSDDFMSLPLEE-----NIFEWQFAIRGPGDTEFEGGIYHGRIQL 66
           A+ R+ QE K  + +    F+++P +      N+  W+ AI G   T +EGG++  R+  
Sbjct: 8   ALSRLAQERKAWRKDHPFGFVAVPTKNPDGTMNLMNWECAIPGKKGTPWEGGLFKLRMLF 67
Query: 67  PAEYPFKPPSFMLLTVRCCSLMEHKSYCLCADYGVRTNVCAFFPPQPNGRFETQTKICLS 126
             +YP  PP                              C F PP  +        +CLS
Sbjct: 68  KDDYPSSPPK-----------------------------CKFEPPLFHPNVYPSGTVCLS 98
Query: 127 ISNHHPEHWQPSWSVRTALVAL 148
           I     + W+P+ +++  L+ +
Sbjct: 99  ILEED-KDWRPAITIKQILLGI 119

>pdb|2Y9M|A Chain A, Pex4p-Pex22p Structure Length = 172

Iteration: 1
 Score = 41.2 bits (95), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 36/155 (23%), Positives = 63/155 (40%), Gaps = 45/155 (29%)
Query: 8   LKNPAVKRILQEVKE-MQSNPSDDFMSLPL-----------EENIFEWQFAIRGPGDTEF 55
           + +  + RI++E K  +++  SDD ++ P            E ++ +W+  I GP DT +
Sbjct: 3   MADTCMSRIVKEYKVILKTLASDDPIANPYRGIIESLNPIDETDLSKWEAIISGPSDTPY 62
Query: 56  EGGIYHGRIQLPAEYPFKPP--SFMLLTVRCCSLMEHKSYCLCADYGVRTNVCAFFPPQP 113
           E   +   I++P+ YP  PP  SFM   +  C++                          
Sbjct: 63  ENHQFRILIEVPSSYPMNPPKISFMQNNILHCNVK------------------------- 97
Query: 114 NGRFETQTKICLSISNHHPEHWQPSWSVRTALVAL 148
                   +ICL+I    PE W P W +   + A+
Sbjct: 98  ----SATGEICLNILK--PEEWTPVWDLLHCVHAV 126

>pdb|2Y9P|A Chain A, Pex4p-Pex22p Mutant Ii Structure Length = 172

Iteration: 1
 Score = 41.2 bits (95), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 36/155 (23%), Positives = 63/155 (40%), Gaps = 45/155 (29%)
Query: 8   LKNPAVKRILQEVKE-MQSNPSDDFMSLPL-----------EENIFEWQFAIRGPGDTEF 55
           + +  + RI++E K  +++  SDD ++ P            E ++ +W+  I GP DT +
Sbjct: 3   MADTCMSRIVKEYKVILKTLASDDPIANPYRGIIESLNPIDETDLSKWEAIISGPSDTPY 62
Query: 56  EGGIYHGRIQLPAEYPFKPP--SFMLLTVRCCSLMEHKSYCLCADYGVRTNVCAFFPPQP 113
           E   +   I++P+ YP  PP  SFM   +  C++                          
Sbjct: 63  ENHQFRILIEVPSSYPMNPPKISFMQNNILHCNVK------------------------- 97
Query: 114 NGRFETQTKICLSISNHHPEHWQPSWSVRTALVAL 148
                   +ICL+I    PE W P W +   + A+
Sbjct: 98  ----SATGEICLNILK--PEEWTPVWDLLHCVHAV 126

>pdb|4EPO|A Chain A, Crystal Structure Of Rnf8 Bound To The Ubc13MMS2 HETERODIMER Length = 149

Iteration: 1
 Score = 41.2 bits (95), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 25/78 (32%), Positives = 40/78 (51%), Gaps = 4/78 (5%)
Query: 8  LKNPAVKRILQEVKEMQSNPSDDFMSLPLEEN----IFEWQFAIRGPGDTEFEGGIYHGR 63
          +K P   R+L+E++E Q    D  +S  LE++    +  W   I GP  T +E  IY  +
Sbjct: 12 VKVPRNFRLLEELEEGQKGVGDGTVSWGLEDDEDMTLTRWTGMIIGPPRTNYENRIYSLK 71
Query: 64 IQLPAEYPFKPPSFMLLT 81
          ++   +YP  PPS   +T
Sbjct: 72 VECGPKYPEAPPSVRFVT 89

>pdb|1J74|A Chain A, Crystal Structure Of Mms2 Length = 145

Iteration: 1
 Score = 41.2 bits (95), Expect = 9e-04,   Method: Compositional matrix adjust.
 Identities = 25/78 (32%), Positives = 40/78 (51%), Gaps = 4/78 (5%)
Query: 8  LKNPAVKRILQEVKEMQSNPSDDFMSLPLEEN----IFEWQFAIRGPGDTEFEGGIYHGR 63
          +K P   R+L+E++E Q    D  +S  LE++    +  W   I GP  T +E  IY  +
Sbjct: 7  VKVPRNFRLLEELEEGQKGVGDGTVSWGLEDDEDMTLTRWTGMIIGPPRTNYENRIYSLK 66
Query: 64 IQLPAEYPFKPPSFMLLT 81
          ++   +YP  PPS   +T
Sbjct: 67 VECGPKYPEAPPSVRFVT 84

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	332
2f4w_A	187	Ubiquitin-conjugating enzyme E2, J2; endoplasmic r	7e-55
2fo3_A	125	Ubiquitin-conjugating enzyme; SGC, UBC, structural	2e-25
2e2c_A	156	Ubiquitin conjugating enzyme; ubiquitin conjugatio	2e-25
1yrv_A	169	Ubiquitin-conjugating ligase MGC351130; structural	4e-25
2h2y_A	136	Ubiquitin-conjugating enzyme; structural genomics,	9e-25
2aak_A	152	UBC1, ubiquitin conjugating enzyme; ubiquitin conj	1e-24
1i7k_A	179	Ubiquitin-conjugating enzyme E2 H10; ligase; 1.95A	2e-24
3fn1_B	167	NEDD8-conjugating enzyme UBE2F; ligase, ATP-bindin	2e-24
1ayz_A	169	UBC2, ubiquitin-conjugating enzyme RAD6; ubiquitin	5e-24
1z2u_A	150	Ubiquitin-conjugating enzyme E2 2; PSI, secsg, pro	8e-24
1jat_B	138	Ubiquitin-conjugating enzyme variant MMS2; UEV, li	9e-24
1zdn_A	158	Ubiquitin-conjugating enzyme E2S; structural genom	3e-23
2a4d_A	160	Ubiquitin-conjugating enzyme E2 variant 1; alterna	3e-23
2c4o_A	165	Ubiquitin-conjugating enzyme E2 D2; thioesterifica	6e-23
2pwq_A	216	Ubiquitin conjugating enzyme; structural genomics	9e-23
2ayv_A	166	Ubiquitin-conjugating enzyme E2; structural genomi	9e-23
2grr_A	161	Ubiquitin-conjugating enzyme E2 I; ubiquitin, conj	1e-22
2hlw_A	170	Ubiquitin-conjugating enzyme E2 variant 1; ubiquit	2e-22
2c2v_B	154	Ubiquitin-conjugating enzyme E2 N; chaperone, heat	2e-22
2y9m_A	172	Ubiquitin-conjugating enzyme E2-21 kDa; ligase-tra	2e-22
3h8k_A	164	Ubiquitin-conjugating enzyme E2 G2; alpha beta, al	2e-22
2gjd_A	157	Ubiquitin-conjugating enzyme E2-18 kDa; UBC9P, SMT	3e-22
2r0j_A	149	Ubiquitin carrier protein; ubiquitin conjugating,	3e-22
1yh2_A	169	HSPC150 protein similar to ubiquitin-conjugating e	4e-22
2awf_A	172	Ubiquitin-conjugating enzyme E2 G1; ligase, UBL co	4e-22
2q0v_A	156	Ubiquitin-conjugating enzyme E2, putative; malaria	4e-22
2bep_A	159	Ubiquitin-conjugating enzyme E2-25 kDa; ligase, E2	5e-22
3rcz_B	163	SUMO-conjugating enzyme UBC9; SUMO-like domain, pr	6e-22
3k9o_A	201	Ubiquitin-conjugating enzyme E2 K; E2-25K, complex	6e-22
1jat_A	155	Ubiquitin-conjugating enzyme E2-17.5 kDa; UEV, lig	6e-22
2ucz_A	165	UBC7, ubiquitin conjugating enzyme; ubiquitin conj	6e-22
2a7l_A	136	Hypothetical ubiquitin-conjugating enzyme LOC55284	7e-22
3rz3_A	183	Ubiquitin-conjugating enzyme E2 R1; ubiquitin conj	9e-22
2onu_A	152	Ubiquitin-conjugating enzyme, putative; UBC, plasm	1e-21
3bzh_A	194	Ubiquitin-conjugating enzyme E2 E1; structural gen	2e-21
1fxt_A	149	Ubiquitin-conjugating enzyme E2-24 kDa; ligase; NM	2e-21
4ddg_A	399	Ubiquitin-conjugating enzyme E2 D2, ubiquitin THI	2e-21
1wzv_A	155	Ubiquitin-conjugating enzyme E2 L6; ligase; 2.10A	2e-21
1c4z_D	154	UBCH7, ubiquitin conjugating enzyme E2; bilobal st	3e-21
3e46_A	253	Ubiquitin-conjugating enzyme E2-25 kDa; huntington	4e-21
1tte_A	215	Ubiquitin-conjugating enzyme E2-24 kDa; UBC1, ubiq	2e-20
2z5d_A	179	Ubiquitin-conjugating enzyme E2 H; UBE2H, SGC, lig	4e-20
1yf9_A	171	Ubiquitin carrier protein 4; SGPP, structural geno	5e-20
1y8x_A	160	Ubiquitin-conjugating enzyme E2 M; ubiquitin-conju	8e-20
3o2u_A	190	NEDD8-conjugating enzyme UBC12; E2 conjugase, liga	1e-19
4ds2_A	167	Ubiquitin-conjugating enzyme E2, putative; structu	3e-19
2f4z_A	193	Tgtwinscan_2721 - E2 domain; ubiquitin conjugating	5e-19
2nvu_C	180	NEDD8-conjugating enzyme UBC12; multifunction macr	6e-19
3ceg_A	323	Baculoviral IAP repeat-containing protein 6; apopt	1e-17
1zuo_A	186	Hypothetical protein LOC92912; ligase, ubiquitin-c	4e-15
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	7e-05

>2f4w_A Ubiquitin-conjugating enzyme E2, J2; endoplasmic reticulum, ligase, UBL conjugation pathway, structural genomics consortium (SGC); 2.00A {Homo sapiens} SCOP: d.20.1.1 Length = 187

 Score =  176 bits (448), Expect = 7e-55
 Identities = 58/174 (33%), Positives = 87/174 (50%), Gaps = 32/174 (18%)

Query: 6   YNLKNPAVKRILQEVKEMQSNPSDDFMSLPLEENIFEWQFAIRGPGDTEFEGGIYHGRIQ 65
                 A +R+ Q+   ++ +P     + PL  NI EW + +RGP  T +EGG YHG++ 
Sbjct: 9   KRAPTTATQRLKQDYLRIKKDPVPYICAEPLPSNILEWHYVVRGPEMTPYEGGYYHGKLI 68

Query: 66  LPAEYPFKPPSFMLLTVRCCSLMEHKSYCLCADYGVRTNVCAFFPPQPNGRFETQTKICL 125
            P E+PFKPPS  ++T                               PNGRF+  T++CL
Sbjct: 69  FPREFPFKPPSIYMIT-------------------------------PNGRFKCNTRLCL 97

Query: 126 SISNHHPEHWQPSWSVRTALVALIAFMPTNPNGALGSLDYKKEERRALAIKSRE 179
           SI++ HP+ W P+WSV T L  L++FM       LGS++     +R LA++S  
Sbjct: 98  SITDFHPDTWNPAWSVSTILTGLLSFMVE-KGPTLGSIETSDFTKRQLAVQSLA 150

>2fo3_A Ubiquitin-conjugating enzyme; SGC, UBC, structural genomics, structural genomics consortium, unknown function; 1.86A {Plasmodium vivax} SCOP: d.20.1.1 Length = 125

 Score = 97.7 bits (244), Expect = 2e-25
 Identities = 35/153 (22%), Positives = 60/153 (39%), Gaps = 33/153 (21%)

Query: 5   RYNLKNPAVKRILQEVKEMQSNPSDDFMSLPLEENIFEWQFAIRGPGDTEFEGGIYHGRI 64
           +YN+   A  RI +E+    +NP  +        NI  W     G  +T +   +Y  +I
Sbjct: 1   KYNM-GNANYRIQKELHNFLNNPPINCTLDVHPNNIRIWIVKYVGLENTIYANEVYKLKI 59

Query: 65  QLPAEYPFKPPSFMLLTVRCCSLMEHKSYCLCADYGVRTNVCAFFPPQPNGRFETQTKIC 124
             P +YP KPP    L        +H            T+V        NG       IC
Sbjct: 60  IFPDDYPLKPPIVYFLQ----KPPKH------------THV------YSNGD------IC 91

Query: 125 LSISNHHPEHWQPSWSVRTALVALIAFMPTNPN 157
           LS+     + + PS S+   ++++I+ + ++  
Sbjct: 92  LSLLG---DDYNPSLSISGLVLSIISML-SSAK 120

>2e2c_A Ubiquitin conjugating enzyme; ubiquitin conjugation, ubiquitin carrier protein, thioester ligase; 2.00A {Spisula solidissima} SCOP: d.20.1.1 Length = 156

 Score = 98.5 bits (246), Expect = 2e-25
 Identities = 39/148 (26%), Positives = 65/148 (43%), Gaps = 33/148 (22%)

Query: 10  NPAVKRILQEVKEMQSNPSDDFMSLPLEENIFEWQFAIRGPGDTEFEGGIYHGRIQLPAE 69
           +   KR+ QE++ +  +      + P  +N+F+W   + GP DT +E   Y   ++ P++
Sbjct: 8   HSVSKRLQQELRTLLMSGDPGITAFPDGDNLFKWVATLDGPKDTVYESLKYKLTLEFPSD 67

Query: 70  YPFKPPSFMLLTVRCCSLMEHKSYCLCADYGVRTNVCAFFPPQPNGRFETQTKICLSISN 129
           YP+KPP      V+  +   H             NV        +G       ICL I  
Sbjct: 68  YPYKPP-----VVKFTTPCWH------------PNV------DQSGN------ICLDILK 98

Query: 130 HHPEHWQPSWSVRTALVALIAFMPTNPN 157
              E+W  S+ VRT L++L + +   PN
Sbjct: 99  ---ENWTASYDVRTILLSLQSLL-GEPN 122

>1yrv_A Ubiquitin-conjugating ligase MGC351130; structural genomics consortium, SGC, ubiquitin- conjugating enzyme; 2.18A {Homo sapiens} SCOP: d.20.1.1 Length = 169

 Score = 98.2 bits (245), Expect = 4e-25
 Identities = 29/153 (18%), Positives = 63/153 (41%), Gaps = 30/153 (19%)

Query: 5   RYNLKNPAVKRILQEVKEMQSNPSDDFMSLPLEENIFEWQFAIRGPGDTEFEGGIYHGRI 64
           R ++   A   + ++  +++ N      + P+ E++ EW+  I G  ++ ++G ++   I
Sbjct: 17  RGSMHGRAYLLLHRDFCDLKENNYKGITAKPVSEDMMEWEVEIEGLQNSVWQGLVFQLTI 76

Query: 65  QLPAEYPFKPPSFMLLTVRCCSLMEHKSYCLCADYGVRTNVCAFFPPQPNGRFETQTKIC 124
              +EY + PP      V+  ++  H                      PN    T    C
Sbjct: 77  HFTSEYNYAPP-----VVKFITIPFH----------------------PNVDPHTGQ-PC 108

Query: 125 LSISNHHPEHWQPSWSVRTALVALIAFMPTNPN 157
           +     +PE W  ++++ + L+AL   + +NP 
Sbjct: 109 IDFL-DNPEKWNTNYTLSSILLALQVML-SNPV 139

>2h2y_A Ubiquitin-conjugating enzyme; structural genomics, unknown function, structural genomics consortium, SGC; 2.80A {Plasmodium falciparum 3D7} Length = 136

 Score = 96.6 bits (241), Expect = 9e-25
 Identities = 33/148 (22%), Positives = 54/148 (36%), Gaps = 32/148 (21%)

Query: 10  NPAVKRILQEVKEMQSNPSDDFMSLPLEENIFEWQFAIRGPGDTEFEGGIYHGRIQLPAE 69
             A  RI +E+     NP  +        NI  W     G  +T +   +Y  +I  P  
Sbjct: 19  GNANYRIQKELNNFLKNPPINCTIDVHPSNIRIWIVQYVGLENTIYANEVYKIKIIFPDN 78

Query: 70  YPFKPPSFMLLTVRCCSLMEHKSYCLCADYGVRTNVCAFFPPQPNGRFETQTKICLSISN 129
           YP KPP    L        +H            T+V        NG       ICLS+  
Sbjct: 79  YPLKPPIVYFLQ----KPPKH------------THV------YSNGD------ICLSVLG 110

Query: 130 HHPEHWQPSWSVRTALVALIAFMPTNPN 157
              + + PS S+   ++++I+ + ++  
Sbjct: 111 ---DDYNPSLSISGLILSIISML-SSAK 134

>2aak_A UBC1, ubiquitin conjugating enzyme; ubiquitin conjugation, ligase; 2.40A {Arabidopsis thaliana} SCOP: d.20.1.1 PDB: 1jas_A 2y4w_A 2yb6_A 2ybf_A 1q34_A 1z3d_A Length = 152

 Score = 96.6 bits (241), Expect = 1e-24
 Identities = 42/147 (28%), Positives = 62/147 (42%), Gaps = 33/147 (22%)

Query: 11  PAVKRILQEVKEMQSNPSDDFMSLPLEENIFEWQFAIRGPGDTEFEGGIYHGRIQLPAEY 70
           PA KR++++ K +Q +P       P + NI  W   I GP DT ++GG +   +Q   +Y
Sbjct: 4   PARKRLMRDFKRLQQDPPAGISGAPQDNNIMLWNAVIFGPDDTPWDGGTFKLSLQFSEDY 63

Query: 71  PFKPPSFMLLTVRCCSLMEHKSYCLCADYGVRTNVCAFFPPQPNGRFETQTKICLSISNH 130
           P KPP     TVR  S M H             N+        +G       ICL I   
Sbjct: 64  PNKPP-----TVRFVSRMFH------------PNI------YADGS------ICLDILQ- 93

Query: 131 HPEHWQPSWSVRTALVALIAFMPTNPN 157
               W P + V   L ++ + +  +PN
Sbjct: 94  --NQWSPIYDVAAILTSIQSLL-CDPN 117

>1i7k_A Ubiquitin-conjugating enzyme E2 H10; ligase; 1.95A {Homo sapiens} SCOP: d.20.1.1 Length = 179

 Score = 96.7 bits (241), Expect = 2e-24
 Identities = 36/149 (24%), Positives = 59/149 (39%), Gaps = 33/149 (22%)

Query: 9   KNPAVKRILQEVKEMQSNPSDDFMSLPLEENIFEWQFAIRGPGDTEFEGGIYHGRIQLPA 68
           + P  KR+ QE+  +  +      + P  +N+F+W   I G   T +E   Y   ++ P+
Sbjct: 28  RGPVGKRLQQELMTLMMSGDKGISAFPESDNLFKWVGTIHGAAGTVYEDLRYKLSLEFPS 87

Query: 69  EYPFKPPSFMLLTVRCCSLMEHKSYCLCADYGVRTNVCAFFPPQPNGRFETQTKICLSIS 128
            YP+  P     TV+  +   H                      PN   +TQ  I L I 
Sbjct: 88  GYPYNAP-----TVKFLTPCYH----------------------PN--VDTQGNISLDIL 118

Query: 129 NHHPEHWQPSWSVRTALVALIAFMPTNPN 157
               E W   + VRT L+++ + +   PN
Sbjct: 119 K---EKWSALYDVRTILLSIQSLL-GEPN 143

>3fn1_B NEDD8-conjugating enzyme UBE2F; ligase, ATP-binding, cell cycle, nucleotide-binding, UBL CON pathway; 2.50A {Homo sapiens} PDB: 2edi_A Length = 167

 Score = 96.3 bits (240), Expect = 2e-24
 Identities = 26/150 (17%), Positives = 51/150 (34%), Gaps = 32/150 (21%)

Query: 11  PAVKRILQEVKEMQSNPSDDFMSLPLEENIFEWQFAIRGPGDTEFEGGIYHGRIQLPAEY 70
              K +++EV E+++N          + N          P +  ++GG +    ++P  Y
Sbjct: 14  VRDKLLVKEVAELEANLPCTCKVHFPDPNKLHCFQLTVTPDEGYYQGGKFQFETEVPDAY 73

Query: 71  PFKPPSFMLLTVRCCSLMEHKSYCLCADYGVRTNVCAFFPPQPNGRFETQTKICLSI--- 127
              PP      V+C + + H             N+         G       ICLS+   
Sbjct: 74  NMVPP-----KVKCLTKIWH------------PNI------TETGE------ICLSLLRE 104

Query: 128 SNHHPEHWQPSWSVRTALVALIAFMPTNPN 157
            +     W P+ +++  +  L +      N
Sbjct: 105 HSIDGTGWAPTRTLKDVVWGLNSLFTDLLN 134

>1ayz_A UBC2, ubiquitin-conjugating enzyme RAD6; ubiquitin conjugation; 2.60A {Saccharomyces cerevisiae} SCOP: d.20.1.1 Length = 169

 Score = 95.5 bits (238), Expect = 5e-24
 Identities = 40/147 (27%), Positives = 62/147 (42%), Gaps = 33/147 (22%)

Query: 11  PAVKRILQEVKEMQSNPSDDFMSLPLEENIFEWQFAIRGPGDTEFEGGIYHGRIQLPAEY 70
           PA +R++++ K M+ +      + PL +N+  W   I GP DT +E G +   ++   EY
Sbjct: 4   PARRRLMRDFKRMKEDAPPGVSASPLPDNVMVWNAMIIGPADTPYEDGTFRLLLEFDEEY 63

Query: 71  PFKPPSFMLLTVRCCSLMEHKSYCLCADYGVRTNVCAFFPPQPNGRFETQTKICLSISNH 130
           P KPP      V+  S M H             NV        NG       ICL I   
Sbjct: 64  PNKPP-----HVKFLSEMFH------------PNV------YANGE------ICLDILQ- 93

Query: 131 HPEHWQPSWSVRTALVALIAFMPTNPN 157
               W P++ V + L ++ +    +PN
Sbjct: 94  --NRWTPTYDVASILTSIQSLF-NDPN 117

>1z2u_A Ubiquitin-conjugating enzyme E2 2; PSI, secsg, proteosome pathway, structural genomics, protein structure initiative; 1.10A {Caenorhabditis elegans} SCOP: d.20.1.1 PDB: 3tgd_A 2esk_A 1ur6_A 1w4u_A 4a49_B* 4a4b_C* 4a4c_C* 3eb6_B 3l1y_A 2esp_A 2eso_A 2esq_A 3l1z_A 2oxq_A 3a33_A 4ddg_D 4ddi_D 1x23_A 3rpg_A 2fuh_A ... Length = 150

 Score = 94.2 bits (235), Expect = 8e-24
 Identities = 37/148 (25%), Positives = 69/148 (46%), Gaps = 33/148 (22%)

Query: 10  NPAVKRILQEVKEMQSNPSDDFMSLPLEENIFEWQFAIRGPGDTEFEGGIYHGRIQLPAE 69
           + A+KRI +E++++  +P     + P+ +++F WQ  I GP ++ ++GG++   I  P +
Sbjct: 3   HMALKRIQKELQDLGRDPPAQCSAGPVGDDLFHWQATIMGPPESPYQGGVFFLTIHFPTD 62

Query: 70  YPFKPPSFMLLTVRCCSLMEHKSYCLCADYGVRTNVCAFFPPQPNGRFETQTKICLSISN 129
           YPFKPP      V   + + H             N+        NG       ICL I  
Sbjct: 63  YPFKPP-----KVAFTTRIYH------------PNI------NSNGS------ICLDILR 93

Query: 130 HHPEHWQPSWSVRTALVALIAFMPTNPN 157
                W P+ ++   L+++ + +  +PN
Sbjct: 94  ---SQWSPALTISKVLLSICSLL-CDPN 117

>1jat_B Ubiquitin-conjugating enzyme variant MMS2; UEV, ligase; 1.60A {Saccharomyces cerevisiae} SCOP: d.20.1.1 PDB: 2gmi_B Length = 138

 Score = 93.9 bits (234), Expect = 9e-24
 Identities = 30/153 (19%), Positives = 50/153 (32%), Gaps = 35/153 (22%)

Query: 9   KNPAVKRILQEVKEMQSNPSDDFMSLPLEE----NIFEWQFAIRGPGDTEFEGGIYHGRI 64
           K P   R+L+E+++ +     +  S  L +     + +W   I GP  +  E  IY   I
Sbjct: 4   KVPRNFRLLEELEKGEKGFGPESCSYGLADSDDITMTKWNGTILGPPHSNHENRIYSLSI 63

Query: 65  QLPAEYPFKPPSFMLLTVRCCSLMEHKSYCLCADYGVRTNVCAFFPPQPNGRFETQTKIC 124
                YP  PP      V   S +                        P     T  ++ 
Sbjct: 64  DCGPNYPDSPP-----KVTFISKINL----------------------PCVNPTT-GEVQ 95

Query: 125 LSISNHHPEHWQPSWSVRTALVALIAFMPTNPN 157
                H    W+ ++++ T L+ L   M   P 
Sbjct: 96  TDF--HTLRDWKRAYTMETLLLDLRKEM-ATPA 125

>1zdn_A Ubiquitin-conjugating enzyme E2S; structural genomics consortium, ubiquitin-conjuga enzyme, ligase, SGC; 1.93A {Homo sapiens} SCOP: d.20.1.1 Length = 158

 Score = 93.1 bits (232), Expect = 3e-23
 Identities = 33/157 (21%), Positives = 61/157 (38%), Gaps = 33/157 (21%)

Query: 1   MAEDRYNLKNPAVKRILQEVKEMQSNPSDDFMSLPLEENIFEWQFAIRGPGDTEFEGGIY 60
           M  +  NL    ++ + +EV  + ++P D     P EE++ + Q  I GP  T + GG++
Sbjct: 3   MNSNVENLPPHIIRLVYKEVTTLTADPPDGIKVFPNEEDLTDLQVTIEGPEGTPYAGGLF 62

Query: 61  HGRIQLPAEYPFKPPSFMLLTVRCCSLMEHKSYCLCADYGVRTNVCAFFPPQPNGRFETQ 120
             ++ L  ++P  PP          + + H             NV        NG     
Sbjct: 63  RMKLLLGKDFPASPP-----KGYFLTKIFH------------PNV------GANGE---- 95

Query: 121 TKICLSISNHHPEHWQPSWSVRTALVALIAFMPTNPN 157
             IC+++       W     +R  L+ +   +  +PN
Sbjct: 96  --ICVNVLK---RDWTAELGIRHVLLTIKCLL-IHPN 126

>2a4d_A Ubiquitin-conjugating enzyme E2 variant 1; alternative splicing, nuclear protein, UBL conjugation pathway,ubiquitin, ligase, structural genomics; 1.69A {Homo sapiens} SCOP: d.20.1.1 PDB: 2c2v_C 1j7d_A 1j74_A 1zgu_A Length = 160

 Score = 93.2 bits (232), Expect = 3e-23
 Identities = 36/157 (22%), Positives = 56/157 (35%), Gaps = 35/157 (22%)

Query: 7   NLKNPAVKRILQEVKEMQSNPSDDFMSLPLEE----NIFEWQFAIRGPGDTEFEGGIYHG 62
            +K P   R+L+E++E Q    D  +S  LE+     +  W   I GP  T +E  IY  
Sbjct: 21  GVKVPRNFRLLEELEEGQKGVGDGTVSWGLEDDEDMTLTRWTGMIIGPPRTIYENRIYSL 80

Query: 63  RIQLPAEYPFKPPSFMLLTVRCCSLMEHKSYCLCADYGVRTNVCAFFPPQPNGRFETQTK 122
           +I+   +YP  PP      VR  + +                V        +        
Sbjct: 81  KIECGPKYPEAPP-----FVRFVTKINM------------NGV------NSSNG--VVDP 115

Query: 123 ICLSISNHHPEHWQPSWSVRTALVALIAFM--PTNPN 157
             +S+       WQ S+S++  L  L   M    N  
Sbjct: 116 RAISV----LAKWQNSYSIKVVLQELRRLMMSKENMK 148

>2c4o_A Ubiquitin-conjugating enzyme E2 D2; thioesterification, ligase, UBL conjugation pathway; HET: CME; 1.94A {Homo sapiens} SCOP: d.20.1.1 PDB: 2clw_A* 2c4p_A Length = 165

 Score = 92.4 bits (230), Expect = 6e-23
 Identities = 38/148 (25%), Positives = 68/148 (45%), Gaps = 33/148 (22%)

Query: 10  NPAVKRILQEVKEMQSNPSDDFMSLPLEENIFEWQFAIRGPGDTEFEGGIYHGRIQLPAE 69
           + A+KRI +E+ ++  +P     + P+ +++F WQ  I GP D+ ++GG++   I  P +
Sbjct: 18  SMALKRIHKELNDLARDPPAQCSAGPVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTD 77

Query: 70  YPFKPPSFMLLTVRCCSLMEHKSYCLCADYGVRTNVCAFFPPQPNGRFETQTKICLSISN 129
           YPFKPP      V   + + H             N+        NG       ICL I  
Sbjct: 78  YPFKPP-----KVAFTTRIYH------------PNI------NSNGS------ICLDILR 108

Query: 130 HHPEHWQPSWSVRTALVALIAFMPTNPN 157
                W P+ ++   L+++ + +  +PN
Sbjct: 109 ---SQWSPALTISKVLLSICSLL-CDPN 132

>2pwq_A Ubiquitin conjugating enzyme; structural genomics consortium, SGC, ligase; 1.90A {Plasmodium yoelii} Length = 216

 Score = 93.3 bits (232), Expect = 9e-23
 Identities = 37/156 (23%), Positives = 71/156 (45%), Gaps = 32/156 (20%)

Query: 2   AEDRYNLKNPAVKRILQEVKEMQSNPSDDFMSLPLEENIFEWQFAIRGPGDTEFEGGIYH 61
            E+ Y   +  + R+ +E+K++++    +  +   + N FEW   I+GP  T +EGG + 
Sbjct: 14  RENLYFQGSKELLRLQKELKDIENENVQEIDAHIKDSNFFEWVGFIKGPEGTPYEGGHFT 73

Query: 62  GRIQLPAEYPFKPPSFMLLTVRCCSLMEHKSYCLCADYGVRTNVCAFFPPQPNGRFETQT 121
             I +P +YP+ PP      ++  + + H                      PN   +T  
Sbjct: 74  LAITIPNDYPYNPP-----KIKFVTKIWH----------------------PNISSQTG- 105

Query: 122 KICLSISNHHPEHWQPSWSVRTALVALIAFMPTNPN 157
            ICL +       W P+ ++RTAL+++ A + ++P 
Sbjct: 106 AICLDVLK---NEWSPALTIRTALLSIQALL-SDPQ 137

>2ayv_A Ubiquitin-conjugating enzyme E2; structural genomics, structural genomics consortium, ubiquit ubiquitin-conjugating enzyme, SGC, ligase; 2.00A {Toxoplasma gondii} SCOP: d.20.1.1 Length = 166

 Score = 92.0 bits (229), Expect = 9e-23
 Identities = 38/146 (26%), Positives = 69/146 (47%), Gaps = 33/146 (22%)

Query: 12  AVKRILQEVKEMQSNPSDDFMSLPLEENIFEWQFAIRGPGDTEFEGGIYHGRIQLPAEYP 71
           A+KRI +E+ ++  +P  +  + P+ +++F WQ  I GP D+ + GG++   I  P++YP
Sbjct: 22  ALKRINKELNDLSKDPPTNCSAGPVGDDMFHWQATIMGPEDSPYSGGVFFLNIHFPSDYP 81

Query: 72  FKPPSFMLLTVRCCSLMEHKSYCLCADYGVRTNVCAFFPPQPNGRFETQTKICLSISNHH 131
           FKPP      V   + + H             N+         G       ICL I    
Sbjct: 82  FKPP-----KVNFTTKIYH------------PNI------NSQGA------ICLDILK-- 110

Query: 132 PEHWQPSWSVRTALVALIAFMPTNPN 157
            + W P+ ++   L+++ + + T+PN
Sbjct: 111 -DQWSPALTISKVLLSISSLL-TDPN 134

>2grr_A Ubiquitin-conjugating enzyme E2 I; ubiquitin, conjugation, small ubiquitin like modifer, SMT3, ligase; 1.30A {Homo sapiens} PDB: 2grq_A 2grn_A 2pe6_A 2gro_A 2grp_A 1u9a_A 1u9b_A 2vrr_A 2px9_B 1z5s_A 2xwu_A 3uin_A 3uio_A 3uip_A* 1kps_A 2o25_C 1a3s_A 3a4s_A 2uyz_A Length = 161

 Score = 91.6 bits (228), Expect = 1e-22
 Identities = 35/153 (22%), Positives = 63/153 (41%), Gaps = 36/153 (23%)

Query: 10  NPAVKRILQEVKEMQSNPSDDFMSLPLEE-----NIFEWQFAIRGPGDTEFEGGIYHGRI 64
             A+ R+ QE K  + +    F+++P +      N+  W+ AI G   T +EGG++  R+
Sbjct: 6   GIALSRLAQERKAWRKDHPFGFVAVPTKNPDGTMNLMNWECAIPGKKGTPWEGGLFKLRM 65

Query: 65  QLPAEYPFKPPSFMLLTVRCCSLMEHKSYCLCADYGVRTNVCAFFPPQPNGRFETQTKIC 124
               +YP  PP       +    + H             NV       P+G       +C
Sbjct: 66  LFKDDYPSSPP-----KCKFEPPLFH------------PNV------YPSGT------VC 96

Query: 125 LSISNHHPEHWQPSWSVRTALVALIAFMPTNPN 157
           LSI     + W+P+ +++  L+ +   +   PN
Sbjct: 97  LSIL-EEDKDWRPAITIKQILLGIQELL-NEPN 127

>2hlw_A Ubiquitin-conjugating enzyme E2 variant 1; ubiquitin-conjugating enzyme variant, UBC13, HUBC13, polyubiquitination, ligase, signaling protein; NMR {Homo sapiens} Length = 170

 Score = 91.4 bits (227), Expect = 2e-22
 Identities = 36/158 (22%), Positives = 55/158 (34%), Gaps = 35/158 (22%)

Query: 9   KNPAVKRILQEVKEMQSNPSDDFMSLPLEE----NIFEWQFAIRGPGDTEFEGGIYHGRI 64
           K P   R+L+E++E Q    D  +S  LE+     +  W   I GP  T +E  IY  +I
Sbjct: 33  KVPRNFRLLEELEEGQKGVGDGTVSWGLEDDEDMTLTRWTGMIIGPPRTIYENRIYSLKI 92

Query: 65  QLPAEYPFKPPSFMLLTVRCCSLMEHKSYCLCADYGVRTNVCAFFPPQPNGRFETQTKIC 124
           +   +YP  PP      VR  + +                V        +          
Sbjct: 93  ECGPKYPEAPP-----FVRFVTKINM------------NGV------NSSNG--VVDPRA 127

Query: 125 LSISNHHPEHWQPSWSVRTALVALIAFM--PTNPNGAL 160
           +S+       WQ S+S++  L  L   M    N     
Sbjct: 128 ISVLA----KWQNSYSIKVVLQELRRLMMSKENMKLPQ 161

>2c2v_B Ubiquitin-conjugating enzyme E2 N; chaperone, heat-shock protein complex, E3 ligase, ubiquitiny TPR, heat-shock protein; 2.9A {Homo sapiens} SCOP: d.20.1.1 Length = 154

 Score = 91.2 bits (227), Expect = 2e-22
 Identities = 40/147 (27%), Positives = 61/147 (41%), Gaps = 33/147 (22%)

Query: 11  PAVKRILQEVKEMQSNPSDDFMSLPLEENIFEWQFAIRGPGDTEFEGGIYHGRIQLPAEY 70
              +RI++E + + + P     + P E N   +   I GP D+ FEGG +   + LP EY
Sbjct: 5   GLPRRIIKETQRLLAEPVPGIKAEPDESNARYFHVVIAGPQDSPFEGGTFKLELFLPEEY 64

Query: 71  PFKPPSFMLLTVRCCSLMEHKSYCLCADYGVRTNVCAFFPPQPNGRFETQTKICLSISNH 130
           P   P      VR  + + H             NV         GR      ICL I   
Sbjct: 65  PMAAP-----KVRFMTKIYH------------PNV------DKLGR------ICLDILK- 94

Query: 131 HPEHWQPSWSVRTALVALIAFMPTNPN 157
             + W P+  +RT L+++ A + + PN
Sbjct: 95  --DKWSPALQIRTVLLSIQALL-SAPN 118

>2y9m_A Ubiquitin-conjugating enzyme E2-21 kDa; ligase-transport protein complex, ubiquitin conjugating ENZY complex, peroxisomal protein; 2.60A {Saccharomyces cerevisiae} PDB: 2y9p_A 2y9o_A Length = 172

 Score = 91.3 bits (227), Expect = 2e-22
 Identities = 34/160 (21%), Positives = 58/160 (36%), Gaps = 42/160 (26%)

Query: 10  NPAVKRILQEVKEMQ---------SNPSDDFMSLPL---EENIFEWQFAIRGPGDTEFEG 57
           +  + RI++E K +          +NP    +       E ++ +W+  I GP DT +E 
Sbjct: 5   DTCMSRIVKEYKVILKTLASDDPIANPYRGIIESLNPIDETDLSKWEAIISGPSDTPYEN 64

Query: 58  GIYHGRIQLPAEYPFKPPSFMLLTVRCCSLMEHKSYCLCADYGVRTNVCAFFPPQPNGRF 117
             +   I++P+ YP  PP    +         H                       N + 
Sbjct: 65  HQFRILIEVPSSYPMNPPKISFMQNNIL----H----------------------CNVKS 98

Query: 118 ETQTKICLSISNHHPEHWQPSWSVRTALVALIAFMPTNPN 157
            T  +ICL+I    PE W P W +   + A+   +   P 
Sbjct: 99  AT-GEICLNIL--KPEEWTPVWDLLHCVHAVWRLL-REPV 134

>3h8k_A Ubiquitin-conjugating enzyme E2 G2; alpha beta, all alpha, ligase, UBL conjugation pathway, endo reticulum, membrane, metal-binding; 1.80A {Homo sapiens} PDB: 3fsh_A 2cyx_A 2kly_A Length = 164

 Score = 90.9 bits (226), Expect = 2e-22
 Identities = 44/157 (28%), Positives = 68/157 (43%), Gaps = 41/157 (26%)

Query: 12  AVKRILQEVKEMQSNPSDDFMSLPL-EENIFEWQFAIRGPGDTEFEGGIYHGRIQLPAEY 70
           A+KR++ E K++  NP +  ++ P+ EEN FEW+  I GP DT FE G++   +  P +Y
Sbjct: 4   ALKRLMAEYKQLTLNPPEGIVAGPMNEENFFEWEALIMGPEDTCFEFGVFPAILSFPLDY 63

Query: 71  PFKPPSFMLLTVRCCSLMEHKSYCLCADYGVRTNVCAFFPPQPNGRFETQTKICLSI--- 127
           P  PP            M H             N+       P+GR      +C+SI   
Sbjct: 64  PLSPPKMRFTCE-----MFH------------PNI------YPDGR------VCISILHA 94

Query: 128 -------SNHHPEHWQPSWSVRTALVALIAFMPTNPN 157
                       E W P  SV   L+++++ +   PN
Sbjct: 95  PGDDPMGYESSAERWSPVQSVEKILLSVVSML-AEPN 130

>2gjd_A Ubiquitin-conjugating enzyme E2-18 kDa; UBC9P, SMT3, crystallography, ligase; 1.75A {Saccharomyces cerevisiae} PDB: 2eke_A 3ong_B Length = 157

 Score = 90.4 bits (225), Expect = 3e-22
 Identities = 34/153 (22%), Positives = 69/153 (45%), Gaps = 36/153 (23%)

Query: 10  NPAVKRILQEVKEMQSNPSDDFMSLPLEE-----NIFEWQFAIRGPGDTEFEGGIYHGRI 64
           +  ++R+ +E K+ + +    F + P+++     ++ +W+  I G   T + GG+Y   +
Sbjct: 3   SLCLQRLQEERKKWRKDHPFGFYAKPVKKADGSMDLQKWEAGIPGKEGTNWAGGVYPITV 62

Query: 65  QLPAEYPFKPPSFMLLTVRCCSLMEHKSYCLCADYGVRTNVCAFFPPQPNGRFETQTKIC 124
           + P EYP KPP      V+  +   H             NV       P+G       IC
Sbjct: 63  EYPNEYPSKPP-----KVKFPAGFYH------------PNV------YPSGT------IC 93

Query: 125 LSISNHHPEHWQPSWSVRTALVALIAFMPTNPN 157
           LSI  +  + W+P+ +++  ++ +   +  +PN
Sbjct: 94  LSIL-NEDQDWRPAITLKQIVLGVQDLL-DSPN 124

>2r0j_A Ubiquitin carrier protein; ubiquitin conjugating, malaria, ligas conjugation pathway, structural genomics, structural genomi consortium; 1.85A {Plasmodium falciparum} PDB: 3e95_A Length = 149

 Score = 90.0 bits (224), Expect = 3e-22
 Identities = 38/144 (26%), Positives = 64/144 (44%), Gaps = 33/144 (22%)

Query: 14  KRILQEVKEMQSNPSDDFMSLPLEENIFEWQFAIRGPGDTEFEGGIYHGRIQLPAEYPFK 73
           +RI +E + + + P    M++P+ EN   +   I GP  T +EGG Y   + LP +YP +
Sbjct: 4   RRITKETQNLANEPPPGIMAVPVPENYRHFNILINGPDGTPYEGGTYKLELFLPEQYPME 63

Query: 74  PPSFMLLTVRCCSLMEHKSYCLCADYGVRTNVCAFFPPQPNGRFETQTKICLSISNHHPE 133
           PP      VR  + + H                      PN   +   +ICL I     +
Sbjct: 64  PP-----KVRFLTKIYH----------------------PN--IDKLGRICLDILK---D 91

Query: 134 HWQPSWSVRTALVALIAFMPTNPN 157
            W P+  +RT L+++ A + ++P 
Sbjct: 92  KWSPALQIRTVLLSIQALL-SSPE 114

>1yh2_A HSPC150 protein similar to ubiquitin-conjugating enzyme; structural genomics consortium, HSCP150, ligase, SGC; 2.00A {Homo sapiens} SCOP: d.20.1.1 Length = 169

 Score = 90.5 bits (225), Expect = 4e-22
 Identities = 30/147 (20%), Positives = 58/147 (39%), Gaps = 31/147 (21%)

Query: 12  AVKRILQEVKEMQSNPSDDFMSLPLEENIFEWQFAIRGPGDTEFEGGIYHGRIQLPAEYP 71
              R+ +E+  + + P         ++ + + +  I G  +T +E G++   + +P  YP
Sbjct: 5   RASRLKRELHMLATEPPPGITCWQDKDQMDDLRAQILGGANTPYEKGVFKLEVIIPERYP 64

Query: 72  FKPPSFMLLTVRCCSLMEHKSYCLCADYGVRTNVCAFFPPQPNGRFETQTKICLSI-SNH 130
           F+PP      +R  + + H             N+         GR      ICL +    
Sbjct: 65  FEPP-----QIRFLTPIYH------------PNI------DSAGR------ICLDVLKLP 95

Query: 131 HPEHWQPSWSVRTALVALIAFMPTNPN 157
               W+PS ++ T L ++   M + PN
Sbjct: 96  PKGAWRPSLNIATVLTSIQLLM-SEPN 121

>2awf_A Ubiquitin-conjugating enzyme E2 G1; ligase, UBL conjugation pathway, structural genomics, structural genomics consortium SGC; 2.10A {Homo sapiens} SCOP: d.20.1.1 PDB: 1pzv_A Length = 172

 Score = 90.5 bits (225), Expect = 4e-22
 Identities = 35/158 (22%), Positives = 67/158 (42%), Gaps = 41/158 (25%)

Query: 11  PAVKRILQEVKEMQSNPSDDFMSLPLEE-NIFEWQFAIRGPGDTEFEGGIYHGRIQLPAE 69
                + +++ E+  NP + F +  +++ +++ W+  I GP DT +EGG++   +  P +
Sbjct: 17  RGSLLLRRQLAELNKNPVEGFSAGLIDDNDLYRWEVLIIGPPDTLYEGGVFKAHLTFPKD 76

Query: 70  YPFKPPSFMLLTVRCCSLMEHKSYCLCADYGVRTNVCAFFPPQPNGRFETQTKICLSI-- 127
           YP +PP    +T      + H             NV        NG       +C+SI  
Sbjct: 77  YPLRPPKMKFITE-----IWH------------PNV------DKNGD------VCISILH 107

Query: 128 --------SNHHPEHWQPSWSVRTALVALIAFMPTNPN 157
                        E W P  +V T ++++I+ +  +PN
Sbjct: 108 EPGEDKYGYEKPEERWLPIHTVETIMISVISML-ADPN 144

>2q0v_A Ubiquitin-conjugating enzyme E2, putative; malaria, structural G structural genomics consortium, SGC, ligase; 2.40A {Plasmodium falciparum} PDB: 3e95_C Length = 156

 Score = 90.1 bits (224), Expect = 4e-22
 Identities = 34/157 (21%), Positives = 57/157 (36%), Gaps = 34/157 (21%)

Query: 5   RYNLKNPAVKRILQEVKEMQSNPSDDFMSLPLEE----NIFEWQFAIRGPGDTEFEGGIY 60
            +    P   R+L E++  Q     + +S  LE      +  W   I G   T FE  IY
Sbjct: 15  YFQGIVPRSFRLLDELERGQKGNVSEGVSFGLESADDITLSNWSCTIFGQPGTVFENRIY 74

Query: 61  HGRIQLPAEYPFKPPSFMLLTVRCCSLMEHKSYCLCADYGVRTNVCAFFPPQPNGRFETQ 120
              I     YP  PP     TV+  + +E             + V         GR    
Sbjct: 75  SLTIFCDDNYPDSPP-----TVKFDTKIEM------------SCV------DNCGR---- 107

Query: 121 TKICLSISNHHPEHWQPSWSVRTALVALIAFMPTNPN 157
             +  +   H  ++W  ++++ T L++L   M ++ N
Sbjct: 108 --VIKNNL-HILKNWNRNYTIETILISLRQEMLSSAN 141

>2bep_A Ubiquitin-conjugating enzyme E2-25 kDa; ligase, E2 conjugating enzyme, protein degradatio structural proteomics in europe, spine; 1.8A {Bos taurus} SCOP: d.20.1.1 PDB: 2bf8_A Length = 159

 Score = 90.0 bits (224), Expect = 5e-22
 Identities = 42/151 (27%), Positives = 62/151 (41%), Gaps = 35/151 (23%)

Query: 10  NPAVKRILQEVKEMQSNPSD---DFMSLPLEENIFEWQFAIRGPGDTEFEGGIYHGRIQL 66
           N AV+RI +E KE+  +            ++EN  E +  I GP DT +EGG Y   I++
Sbjct: 7   NIAVQRIKREFKEVLKSEETSKNQIKVDLVDENFTELRGEIAGPPDTPYEGGRYQLEIKI 66

Query: 67  PAEYPFKPPSFMLLTVRCCSLMEHKSYCLCADYGVRTNVCAFFPPQPNGRFETQTKICLS 126
           P  YPF PP      VR  + + H             N+         G       ICL 
Sbjct: 67  PETYPFNPP-----KVRFITKIWH------------PNI-----SSVTGA------ICLD 98

Query: 127 ISNHHPEHWQPSWSVRTALVALIAFMPTNPN 157
           I     + W  + ++RT L++L A +     
Sbjct: 99  ILK---DQWAAAMTLRTVLLSLQALL-AAAE 125

>3rcz_B SUMO-conjugating enzyme UBC9; SUMO-like domain, protein:protein interaction, protein ligase complex; HET: DNA; 1.90A {Schizosaccharomyces pombe} Length = 163

 Score = 89.7 bits (223), Expect = 6e-22
 Identities = 34/153 (22%), Positives = 62/153 (40%), Gaps = 36/153 (23%)

Query: 10  NPAVKRILQEVKEMQSNPSDDFMSLPLEE-----NIFEWQFAIRGPGDTEFEGGIYHGRI 64
           +    R+ +E K+ + +    F + P +      ++  W+  I G   T +EGG+Y   +
Sbjct: 9   SLCKTRLQEERKQWRRDHPFGFYAKPCKSSDGGLDLMNWKVGIPGKPKTSWEGGLYKLTM 68

Query: 65  QLPAEYPFKPPSFMLLTVRCCSLMEHKSYCLCADYGVRTNVCAFFPPQPNGRFETQTKIC 124
             P EYP +PP            + H             NV       P+G       +C
Sbjct: 69  AFPEEYPTRPPKCRFTPP-----LFH------------PNV------YPSGT------VC 99

Query: 125 LSISNHHPEHWQPSWSVRTALVALIAFMPTNPN 157
           LSI  +  E W+P+ +++  L+ +   +  +PN
Sbjct: 100 LSIL-NEEEGWKPAITIKQILLGIQDLL-DDPN 130

>3k9o_A Ubiquitin-conjugating enzyme E2 K; E2-25K, complex structure, ATP-binding, isopeptide BO ligase, nucleotide-binding, UBL conjugation pathway; 1.80A {Homo sapiens} PDB: 3k9p_A 1yla_A 2o25_A Length = 201

 Score = 90.9 bits (226), Expect = 6e-22
 Identities = 49/200 (24%), Positives = 80/200 (40%), Gaps = 42/200 (21%)

Query: 10  NPAVKRILQEVKEMQSNPSD---DFMSLPLEENIFEWQFAIRGPGDTEFEGGIYHGRIQL 66
           N AV+RI +E KE+  +            ++EN  E +  I GP DT +EGG Y   I++
Sbjct: 4   NIAVQRIKREFKEVLKSEETSKNQIKVDLVDENFTELRGEIAGPPDTPYEGGRYQLEIKI 63

Query: 67  PAEYPFKPPSFMLLTVRCCSLMEHKSYCLCADYGVRTNVCAFFPPQPNGRFETQTKICLS 126
           P  YPF PP    +T +      H             N+         G       ICL 
Sbjct: 64  PETYPFNPPKVRFIT-KIW----H------------PNI-----SSVTGA------ICLD 95

Query: 127 ISNHHPEHWQPSWSVRTALVALIAFM----PTNP-NGALGSL---DYKKEERRALAIKSR 178
           I     + W  + ++RT L++L A +    P +P +  + +    + +  ++ A      
Sbjct: 96  ILK---DQWAAAMTLRTVLLSLQALLAAAEPDDPQDAVVANQYKQNPEMFKQTARLWAHV 152

Query: 179 EAAPKFGTPERQKLIDEIHE 198
            A     +PE  K I+ +  
Sbjct: 153 YAGAPVSSPEYTKKIENLCA 172

>1jat_A Ubiquitin-conjugating enzyme E2-17.5 kDa; UEV, ligase; 1.60A {Saccharomyces cerevisiae} SCOP: d.20.1.1 PDB: 1jbb_A 2gmi_A 3hct_B 3hcu_B 4dhi_D 1j7d_B 4dhj_C 4dhz_F Length = 155

 Score = 89.6 bits (223), Expect = 6e-22
 Identities = 37/146 (25%), Positives = 66/146 (45%), Gaps = 33/146 (22%)

Query: 12  AVKRILQEVKEMQSNPSDDFMSLPLEENIFEWQFAIRGPGDTEFEGGIYHGRIQLPAEYP 71
             KRI++E +++ S+P     + P ++N+  +Q  I GP  + +E GI+   + LP +YP
Sbjct: 6   LPKRIIKETEKLVSDPVPGITAEPHDDNLRYFQVTIEGPEQSPYEDGIFELELYLPDDYP 65

Query: 72  FKPPSFMLLTVRCCSLMEHKSYCLCADYGVRTNVCAFFPPQPNGRFETQTKICLSISNHH 131
            + P      VR  + + H             N+         GR      ICL +    
Sbjct: 66  MEAP-----KVRFLTKIYH------------PNI------DRLGR------ICLDVLK-- 94

Query: 132 PEHWQPSWSVRTALVALIAFMPTNPN 157
             +W P+  +RT L+++ A +  +PN
Sbjct: 95  -TNWSPALQIRTVLLSIQALL-ASPN 118

>2ucz_A UBC7, ubiquitin conjugating enzyme; ubiquitin conjugation, ligase, yeast; 2.93A {Saccharomyces cerevisiae} SCOP: d.20.1.1 Length = 165

 Score = 89.7 bits (223), Expect = 6e-22
 Identities = 38/159 (23%), Positives = 67/159 (42%), Gaps = 41/159 (25%)

Query: 10  NPAVKRILQEVKEMQSNPSDDFMSLPL-EENIFEWQFAIRGPGDTEFEGGIYHGRIQLPA 68
             A KR+L+E++++  +     ++ P  E NIF W   I+GP DT +  G+++ +++ P 
Sbjct: 3   KTAQKRLLKELQQLIKDSPPGIVAGPKSENNIFIWDCLIQGPPDTPYADGVFNAKLEFPK 62

Query: 69  EYPFKPPSFMLLTVRCCSLMEHKSYCLCADYGVRTNVCAFFPPQPNGRFETQTKICLSI- 127
           +YP  PP            + H             N+       PNG       +C+SI 
Sbjct: 63  DYPLSPPKLTFTPS-----ILH------------PNI------YPNGE------VCISIL 93

Query: 128 ---------SNHHPEHWQPSWSVRTALVALIAFMPTNPN 157
                         E W P  SV   L+++++ + + PN
Sbjct: 94  HSPGDDPNMYELAEERWSPVQSVEKILLSVMSML-SEPN 131

>2a7l_A Hypothetical ubiquitin-conjugating enzyme LOC55284; structural genomics consortium, (SGC), ligase; 1.82A {Homo sapiens} SCOP: d.20.1.1 Length = 136

 Score = 88.9 bits (221), Expect = 7e-22
 Identities = 31/144 (21%), Positives = 55/144 (38%), Gaps = 32/144 (22%)

Query: 11  PAVKRILQEVKEMQSNPSDDFMSLP--LEENIFEWQFAIRGPGDTEFEGGIYHGRIQLPA 68
              KR+ +E+  +Q++P          ++ +I +W   + G   T +EG  +    +  +
Sbjct: 22  SMQKRLQKELLALQNDPPPGMTLNEKSVQNSITQWIVDMEGAPGTLYEGEKFQLLFKFSS 81

Query: 69  EYPFKPPSFMLLTVRCCSLMEHKSYCLCADYGVRTNVCAFFPPQPNGRFETQTKICLSIS 128
            YPF  P  M           H             +V        NG       ICLSI 
Sbjct: 82  RYPFDSPQVMFTGENIP---VH------------PHV------YSNGH------ICLSIL 114

Query: 129 NHHPEHWQPSWSVRTALVALIAFM 152
               E W P+ SV++  +++I+ +
Sbjct: 115 T---EDWSPALSVQSVCLSIISML 135

>3rz3_A Ubiquitin-conjugating enzyme E2 R1; ubiquitin conjugating enzyme domain, E2 domain, ligase-ligas inhibitor complex; HET: U94; 2.30A {Homo sapiens} PDB: 2ob4_A Length = 183

 Score = 89.8 bits (223), Expect = 9e-22
 Identities = 43/158 (27%), Positives = 71/158 (44%), Gaps = 41/158 (25%)

Query: 11  PAVKRILQEVKEMQSNPSDDFMSLPL-EENIFEWQFAIRGPGDTEFEGGIYHGRIQLPAE 69
            + K +L E+K +Q  P + F    + E +++ W+ AI GP +T +EGG +  R++ P +
Sbjct: 7   SSQKALLLELKGLQEEPVEGFRVTLVDEGDLYNWEVAIFGPPNTYYEGGYFKARLKFPID 66

Query: 70  YPFKPPSFMLLTVRCCSLMEHKSYCLCADYGVRTNVCAFFPPQPNGRFETQTKICLSI-- 127
           YP+ PP+F  LT      M H             N+         G       +C+SI  
Sbjct: 67  YPYSPPAFRFLTK-----MWH------------PNI------YETGD------VCISILH 97

Query: 128 --------SNHHPEHWQPSWSVRTALVALIAFMPTNPN 157
                        E W P+ +VRT L+++I+ +   PN
Sbjct: 98  PPVDDPQSGELPSERWNPTQNVRTILLSVISLL-NEPN 134

>2onu_A Ubiquitin-conjugating enzyme, putative; UBC, plasmodium FAL structural genomics consortium, SGC, ligase; HET: PG4; 2.38A {Plasmodium falciparum} Length = 152

 Score = 88.9 bits (221), Expect = 1e-21
 Identities = 26/144 (18%), Positives = 48/144 (33%), Gaps = 31/144 (21%)

Query: 14  KRILQEVKEMQSNPSDDFMSLPLEENIFEWQFAIRGPGDTEFEGGIYHGRIQLPAEYPFK 73
             + ++  +        +       +  ++     GP  T +EGGI+   + LP +YPF 
Sbjct: 2   TSLTRKQCDFTKLIMAGYDLELNNGSTQDFDVMFHGPNGTAYEGGIWKVHVTLPDDYPFA 61

Query: 74  PPSFMLLTVRCCSLMEHKSYCLCADYGVRTNVCAFFPPQPNGRFETQTKICLSISNHHPE 133
            PS   +          K                     PN    + + +CL + N   +
Sbjct: 62  SPSIGFMN---------KLL------------------HPNVDEASGS-VCLDVIN---Q 90

Query: 134 HWQPSWSVRTALVALIAFMPTNPN 157
            W P +S+       +  + T PN
Sbjct: 91  TWTPLYSLVNVFEVFLPQLLTYPN 114

>3bzh_A Ubiquitin-conjugating enzyme E2 E1; structural genomics consortium, ubiquitin-conjuga enzyme, ligase, SGC, UBL conjugation pathway; 1.60A {Homo sapiens} PDB: 1y6l_A Length = 194

 Score = 89.4 bits (222), Expect = 2e-21
 Identities = 37/148 (25%), Positives = 67/148 (45%), Gaps = 33/148 (22%)

Query: 10  NPAVKRILQEVKEMQSNPSDDFMSLPLEENIFEWQFAIRGPGDTEFEGGIYHGRIQLPAE 69
           + + KRI +E+ ++  +P  +  + P  +NI+EW+  I GP  + +EGG++   I    E
Sbjct: 47  STSAKRIQKELADITLDPPPNCSAGPKGDNIYEWRSTILGPPGSVYEGGVFFLDITFTPE 106

Query: 70  YPFKPPSFMLLTVRCCSLMEHKSYCLCADYGVRTNVCAFFPPQPNGRFETQTKICLSISN 129
           YPFKPP      V   + + H                       N    +Q  ICL I  
Sbjct: 107 YPFKPP-----KVTFRTRIYH----------------------CN--INSQGVICLDILK 137

Query: 130 HHPEHWQPSWSVRTALVALIAFMPTNPN 157
              ++W P+ ++   L+++ + + T+ N
Sbjct: 138 ---DNWSPALTISKVLLSICSLL-TDCN 161

>1fxt_A Ubiquitin-conjugating enzyme E2-24 kDa; ligase; NMR {Saccharomyces cerevisiae} SCOP: d.20.1.1 PDB: 1fzy_A Length = 149

 Score = 88.1 bits (219), Expect = 2e-21
 Identities = 37/147 (25%), Positives = 64/147 (43%), Gaps = 33/147 (22%)

Query: 12  AVKRILQEVKEMQSNPSDDFMSLPL-EENIFEWQFAIRGPGDTEFEGGIYHGRIQLPAEY 70
             KRI++E++ ++ +P+       + E +I   +    GP  T +EGG +   I++P EY
Sbjct: 2   RAKRIMKEIQAVKDDPAAHITLEFVSESDIHHLKGTFLGPPGTPYEGGKFVVDIEVPMEY 61

Query: 71  PFKPPSFMLLTVRCCSLMEHKSYCLCADYGVRTNVCAFFPPQPNGRFETQTKICLSISNH 130
           PFKPP      ++  + + H                      PN    T   ICL I   
Sbjct: 62  PFKPP-----KMQFDTKVYH----------------------PNISSVTG-AICLDILK- 92

Query: 131 HPEHWQPSWSVRTALVALIAFMPTNPN 157
               W P  ++++AL++L A +  +P 
Sbjct: 93  --NAWSPVITLKSALISLQALL-QSPE 116

>4ddg_A Ubiquitin-conjugating enzyme E2 D2, ubiquitin THI OTUB1; inhibition, hydrolase-ligase complex; 3.30A {Homo sapiens} PDB: 4ddi_A Length = 399

 Score = 93.1 bits (231), Expect = 2e-21
 Identities = 37/146 (25%), Positives = 66/146 (45%), Gaps = 33/146 (22%)

Query: 12  AVKRILQEVKEMQSNPSDDFMSLPLEENIFEWQFAIRGPGDTEFEGGIYHGRIQLPAEYP 71
           A+KRI +E+ ++  +P     + P+ +++F WQ  I GP D+ ++GG++   I  P +YP
Sbjct: 4   ALKRIHKELNDLARDPPAQCSAGPVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYP 63

Query: 72  FKPPSFMLLTVRCCSLMEHKSYCLCADYGVRTNVCAFFPPQPNGRFETQTKICLSISNHH 131
           FKPP      V   + + H             N+        NG       I L I    
Sbjct: 64  FKPP-----KVAFTTRIYH------------PNI------NSNGS------ISLDILR-- 92

Query: 132 PEHWQPSWSVRTALVALIAFMPTNPN 157
              W P+ ++   L+++ + +  +PN
Sbjct: 93  -SQWSPALTISKVLLSICSLL-CDPN 116

>1wzv_A Ubiquitin-conjugating enzyme E2 L6; ligase; 2.10A {Homo sapiens} SCOP: d.20.1.1 PDB: 1wzw_A 2kjh_A Length = 155

 Score = 88.1 bits (219), Expect = 2e-21
 Identities = 35/147 (23%), Positives = 59/147 (40%), Gaps = 34/147 (23%)

Query: 12  AVKRILQEVKEMQSNPSDDFMSLPLEE-NIFEWQFAIRGPGDTEFEGGIYHGRIQLPAEY 70
           A  R+++E++++Q  P     +L  ++ N+  W  A+  P    +    ++ RI  P EY
Sbjct: 5   ASMRVVKELEDLQKKPPPYLRNLSSDDANVLVWH-ALLLPDQPPYHLKAFNLRISFPPEY 63

Query: 71  PFKPPSFMLLTVRCCSLMEHKSYCLCADYGVRTNVCAFFPPQPNGRFETQTKICLSISNH 130
           PFKPP      ++  + + H                      PN   +   +ICL I   
Sbjct: 64  PFKPP-----MIKFTTKIYH----------------------PN--VDENGQICLPII-- 92

Query: 131 HPEHWQPSWSVRTALVALIAFMPTNPN 157
             E+W+P       L AL   +   PN
Sbjct: 93  SSENWKPCTKTCQVLEALNVLV-NRPN 118

>1c4z_D UBCH7, ubiquitin conjugating enzyme E2; bilobal structure, elongated shape, E3 ubiquitin ligase, E2 ubiquitin conjugating enzyme; 2.60A {Homo sapiens} SCOP: d.20.1.1 PDB: 1fbv_C* 3sy2_C 3sqv_C Length = 154

 Score = 87.7 bits (218), Expect = 3e-21
 Identities = 34/147 (23%), Positives = 65/147 (44%), Gaps = 34/147 (23%)

Query: 12  AVKRILQEVKEMQSNPSDDFMSLPL-EENIFEWQFAIRGPGDTEFEGGIYHGRIQLPAEY 70
           A +R+++E++E++     +F ++ + E N+  WQ  I  P +  ++ G +   I  PAEY
Sbjct: 3   ASRRLMKELEEIRKCGMKNFRNIQVDEANLLTWQGLI-VPDNPPYDKGAFRIEINFPAEY 61

Query: 71  PFKPPSFMLLTVRCCSLMEHKSYCLCADYGVRTNVCAFFPPQPNGRFETQTKICLSISNH 130
           PFKPP      +   + + H             N+         G+      +CL +   
Sbjct: 62  PFKPP-----KITFKTKIYH------------PNI------DEKGQ------VCLPVI-- 90

Query: 131 HPEHWQPSWSVRTALVALIAFMPTNPN 157
             E+W+P+      + +LIA +  +P 
Sbjct: 91  SAENWKPATKTDQVIQSLIALV-NDPQ 116

>3e46_A Ubiquitin-conjugating enzyme E2-25 kDa; huntington interacting, ligase, alternative splicing, cytoplasm, UBL conjugation, UBL conjugation pathway; 1.86A {Homo sapiens} SCOP: a.5.2.1 d.20.1.1 PDB: 3f92_A* Length = 253

 Score = 90.0 bits (223), Expect = 4e-21
 Identities = 49/219 (22%), Positives = 81/219 (36%), Gaps = 44/219 (20%)

Query: 7   NLKNPAVKRILQEVKEMQSNPSD---DFMSLPLEENIFEWQFAIRGPGDTEFEGGIYHGR 63
           ++ N AV+RI +E KE+  +            ++EN  E +  I GP DT +EGG Y   
Sbjct: 53  DMANIAVQRIKREFKEVLKSEETSKNQIKVDLVDENFTELRGEIAGPPDTPYEGGRYQLE 112

Query: 64  IQLPAEYPFKPPSFMLLTVRCCSLMEHKSYCLCADYGVRTNVCAFFPPQPNGRFETQTKI 123
           I++P  YPF PP    +T         K +          N+         G       I
Sbjct: 113 IKIPETYPFNPPKVRFIT---------KIW--------HPNI-----SSVTGA------I 144

Query: 124 CLSISNHHPEHWQPSWSVRTALVALIAFMPTNPN---------GALGSLDYKKEERRALA 174
           CL I     + W  + ++RT L++L A +                    + +  ++ A  
Sbjct: 145 CLDILK---DQWAAAMTLRTVLLSLQALL-AAAEPDDPQDAVVANQYKQNPEMFKQTARL 200

Query: 175 IKSREAAPKFGTPERQKLIDEIHEYMLSKAPPVPQLSTC 213
                A     +PE  K I+ +      +   +  LS+ 
Sbjct: 201 WAHVYAGAPVSSPEYTKKIENLCAAGFDRNAVIVALSSK 239

>1tte_A Ubiquitin-conjugating enzyme E2-24 kDa; UBC1, ubiquitin-dependent degradation, ligase; NMR {Saccharomyces cerevisiae} SCOP: a.5.2.1 d.20.1.1 Length = 215

 Score = 87.2 bits (216), Expect = 2e-20
 Identities = 39/147 (26%), Positives = 62/147 (42%), Gaps = 33/147 (22%)

Query: 12  AVKRILQEVKEMQSNPSDDFMSLPL-EENIFEWQFAIRGPGDTEFEGGIYHGRIQLPAEY 70
             KRI++E++ ++ +P+       + E +I   +    GP  T +EGG +   I++P EY
Sbjct: 3   RAKRIMKEIQAVKDDPAAHITLEFVSESDIHHLKGTFLGPPGTPYEGGKFVVDIEVPMEY 62

Query: 71  PFKPPSFMLLTVRCCSLMEHKSYCLCADYGVRTNVCAFFPPQPNGRFETQTKICLSISNH 130
           PFKPP     T         K Y                   PN    T   ICL I   
Sbjct: 63  PFKPPKMQFDT---------KVY------------------HPNISSVTGA-ICLDILR- 93

Query: 131 HPEHWQPSWSVRTALVALIAFMPTNPN 157
               W P  ++++AL++L A +  +P 
Sbjct: 94  --NAWSPVITLKSALISLQALL-QSPE 117

>2z5d_A Ubiquitin-conjugating enzyme E2 H; UBE2H, SGC, ligase, structural genomics, structural genomics consortium; 2.10A {Homo sapiens} Length = 179

 Score = 85.1 bits (211), Expect = 4e-20
 Identities = 29/147 (19%), Positives = 55/147 (37%), Gaps = 35/147 (23%)

Query: 11  PAVKRILQEVKEMQSNPSDDFMSLPLEENIFEWQFAIRGPGDTEFEGGIYHGRIQLPAEY 70
           P  +R+  +V ++  +  +      +   + E+     GP  T +EGG++  R+ LP +Y
Sbjct: 25  PGKRRMDTDVIKLIESKHEV----TILGGLNEFVVKFYGPQGTPYEGGVWKVRVDLPDKY 80

Query: 71  PFKPPSFMLLTVRCCSLMEHKSYCLCADYGVRTNVCAFFPPQPNGRFETQTKICLSISNH 130
           PFK PS   +          K +                   PN    + T +CL + N 
Sbjct: 81  PFKSPSIGFMN---------KIF------------------HPNIDEASGT-VCLDVIN- 111

Query: 131 HPEHWQPSWSVRTALVALIAFMPTNPN 157
             + W   + +     + +  +   PN
Sbjct: 112 --QTWTALYDLTNIFESFLPQLLAYPN 136

>1yf9_A Ubiquitin carrier protein 4; SGPP, structural genomics, PSI, protein structure initiative ubiquitin conjugating enzyme; 2.00A {Leishmania major} SCOP: d.20.1.1 Length = 171

 Score = 84.7 bits (210), Expect = 5e-20
 Identities = 25/146 (17%), Positives = 50/146 (34%), Gaps = 35/146 (23%)

Query: 12  AVKRILQEVKEMQSNPSDDFMSLPLEENIFEWQFAIRGPGDTEFEGGIYHGRIQLPAEYP 71
           + +R   +   + ++       +   + + E+    +GP  T +E G +   +QLP++YP
Sbjct: 13  SNRRREMDYMRLCNST----RKVYPSDTVAEFWVEFKGPEGTPYEDGTWMLHVQLPSDYP 68

Query: 72  FKPPSFMLLTVRCCSLMEHKSYCLCADYGVRTNVCAFFPPQPNGRFETQTKICLSISNHH 131
           FK PS              +                     PN    +   +CL + N  
Sbjct: 69  FKSPSIGFCN---------RIL------------------HPNVDERS-GSVCLDVIN-- 98

Query: 132 PEHWQPSWSVRTALVALIAFMPTNPN 157
            + W P + +       +  +   PN
Sbjct: 99  -QTWTPMYQLENIFDVFLPQLLRYPN 123

>1y8x_A Ubiquitin-conjugating enzyme E2 M; ubiquitin-conjugating enzyme E2 M, ligase; 2.40A {Homo sapiens} SCOP: d.20.1.1 Length = 160

 Score = 83.9 bits (208), Expect = 8e-20
 Identities = 27/148 (18%), Positives = 56/148 (37%), Gaps = 35/148 (23%)

Query: 10  NPAVKRILQEVKEMQSNPSDDFMSLPLEENIFEWQFAIRGPGDTEFEGGIYHGRIQLPAE 69
           + A  RI +++ E+    + D  S    +++  ++  I  P +  ++ G +    ++   
Sbjct: 5   SAAQLRIQKDINELNLPKTCDI-SFSDPDDLLNFKLVI-CPDEGFYKSGKFVFSFKVGQG 62

Query: 70  YPFKPPSFMLLTVRCCSLMEHKSYCLCADYGVRTNVCAFFPPQPNGRFETQTKICLSISN 129
           YP  PP      V+C +++ H             N+         G       +CL+I  
Sbjct: 63  YPHDPP-----KVKCETMVYH------------PNI------DLEGN------VCLNILR 93

Query: 130 HHPEHWQPSWSVRTALVALIAFMPTNPN 157
              E W+P  ++ + +  L       PN
Sbjct: 94  ---EDWKPVLTINSIIYGLQYLF-LEPN 117

>3o2u_A NEDD8-conjugating enzyme UBC12; E2 conjugase, ligase; 2.00A {Saccharomyces cerevisiae} PDB: 3tdi_C Length = 190

 Score = 84.0 bits (208), Expect = 1e-19
 Identities = 25/152 (16%), Positives = 51/152 (33%), Gaps = 37/152 (24%)

Query: 10  NPAVKRILQEVKEMQSNPSDDFMSLPLEENIFEWQFA----IRGPGDTEFEGGIYHGRIQ 65
           + A  R+ +++  +   P+     +   ++    Q      I  P +  +  G  +  + 
Sbjct: 28  SAARIRLKRDLDSLDLPPTVTLNVITSPDSADRSQSPKLEVIVRPDEGYYNYGSINFNLD 87

Query: 66  LPAEYPFKPPSFMLLTVRCCSLMEHKSYCLCADYGVRTNVCAFFPPQPNGRFETQTKICL 125
               YP +PP      V C   + H                      PN   + +  +CL
Sbjct: 88  FNEVYPIEPP-----KVVCLKKIFH----------------------PN--IDLKGNVCL 118

Query: 126 SISNHHPEHWQPSWSVRTALVALIAFMPTNPN 157
           +I     E W P+  +++ +  L+      PN
Sbjct: 119 NILR---EDWSPALDLQSIITGLLFLF-LEPN 146

>4ds2_A Ubiquitin-conjugating enzyme E2, putative; structural genomics, PSI, protein structure initiative; 2.63A {Trypanosoma cruzi} Length = 167

 Score = 82.5 bits (204), Expect = 3e-19
 Identities = 28/165 (16%), Positives = 52/165 (31%), Gaps = 48/165 (29%)

Query: 9   KNPAVKRILQEVKEMQ------------SNPSDDFMSLPLEENIFEWQFAIRGPGDTEF- 55
           KN + KRI++++K +              +P    +     + I+ W   ++ P D+ + 
Sbjct: 6   KNISNKRIIKDLKLLLEEVDANNEANSSGSPHSTAIFSVDTDTIYNWILKVKAPADSVYG 65

Query: 56  -EGGIYHGRIQLPAEYPFKPPSFMLLTVRCCSLMEHKSYCLCADYGVRTNVCAFFPPQPN 114
             G  Y   +    +YP +PP     TVR  + +                V         
Sbjct: 66  GAGNTYQLSVLFSDDYPHEPP-----TVRFVTPVYS------------PLV------TGE 102

Query: 115 GRFETQTKICLSISNHHPEHWQPSWSVRTALVALIA--FMPTNPN 157
           G       IC  + N   + W P       +  ++   F      
Sbjct: 103 GG------ICDRMVN---DFWTPDQHASDVIKLVLDRVFSQYKSR 138

>2f4z_A Tgtwinscan_2721 - E2 domain; ubiquitin conjugating tgtwinscan_2721, structural genomics, structural genomics consortium, SGC; 2.11A {Toxoplasma gondii} SCOP: d.20.1.1 Length = 193

 Score = 82.5 bits (204), Expect = 5e-19
 Identities = 38/170 (22%), Positives = 67/170 (39%), Gaps = 45/170 (26%)

Query: 1   MAEDRYNLKNPAVKRILQEVKEMQ-------------SNPSDDFMSLPLEENIFEWQFAI 47
           MA  +         R+L+E+ ++Q              + S    +  +  +I  W+  I
Sbjct: 22  MATAQPRGTPREQARLLKELADIQQLQRAHDSEPAATHSTSHGVSAQIVGGDIHRWRGFI 81

Query: 48  RGPGDTEFEGGIYHGRIQLPAEYPFKPPSFMLLTVRCCSLMEHKSYCLCADYGVRTNVCA 107
            GP  T +EGG +   I +P +YP+ PP      ++  + + H                 
Sbjct: 82  AGPLGTPYEGGHFTLDIVIPPDYPYNPP-----KMKFVTKIWH----------------- 119

Query: 108 FFPPQPNGRFETQTKICLSISNHHPEHWQPSWSVRTALVALIAFMPTNPN 157
                PN   +T   ICL I       W P+ ++RTAL+++ A +  +P 
Sbjct: 120 -----PNISSQT-GAICLDILK---HEWSPALTIRTALLSIQAML-ADPV 159

>2nvu_C NEDD8-conjugating enzyme UBC12; multifunction macromolecular complex, ubiquitin, ATP, conformational change, thioester, switch, adenylation, protein turnover, ligase; HET: ATP; 2.80A {Homo sapiens} SCOP: d.20.1.1 Length = 180

 Score = 82.0 bits (203), Expect = 6e-19
 Identities = 25/148 (16%), Positives = 56/148 (37%), Gaps = 35/148 (23%)

Query: 10  NPAVKRILQEVKEMQSNPSDDFMSLPLEENIFEWQFAIRGPGDTEFEGGIYHGRIQLPAE 69
           + A  RI +++ E+    +   +S    +++  ++  I  P +  ++ G +    ++   
Sbjct: 25  SAAQLRIQKDINELNLPKTC-DISFSDPDDLLNFKLVI-CPDEGFYKSGKFVFSFKVGQG 82

Query: 70  YPFKPPSFMLLTVRCCSLMEHKSYCLCADYGVRTNVCAFFPPQPNGRFETQTKICLSISN 129
           YP  PP      V+C +++ H                      PN   + +  + L+I  
Sbjct: 83  YPHDPP-----KVKCETMVYH----------------------PN--IDLEGNVALNILR 113

Query: 130 HHPEHWQPSWSVRTALVALIAFMPTNPN 157
              E W+P  ++ + +  L       PN
Sbjct: 114 ---EDWKPVLTINSIIYGLQYLF-LEPN 137

>3ceg_A Baculoviral IAP repeat-containing protein 6; apoptosis, ligase, protease inhibitor, thiol protease inhibitor, UBL conjugation pathway; HET: MSE; 2.01A {Homo sapiens} Length = 323

 Score = 81.3 bits (200), Expect = 1e-17
 Identities = 31/157 (19%), Positives = 49/157 (31%), Gaps = 32/157 (20%)

Query: 9   KNPAVKRILQEVKEMQSNPSDDFMSLPL----EENIFEWQFAIRGPGDTEFEGGIYHGRI 64
                +R+ QE   + ++      S       EE +   +  I GP DT +  G +   +
Sbjct: 74  SAARARRLAQEAVTLSTSLPLSSSSSVFVRCDEERLDIMKVLITGPADTPYANGCFEFDV 133

Query: 65  QLPAEYPFKPPSFMLLTVRCCSLMEHKSYCLCADYGVRTNVCAFFPPQPNGRFETQTKIC 124
             P +YP  PP   L T    S+  +                      PN       K+C
Sbjct: 134 YFPQDYPSSPPLVNLETTGGHSVRFN----------------------PN--LYNDGKVC 169

Query: 125 LSI----SNHHPEHWQPSWSVRTALVALIAFMPTNPN 157
           LSI         E W P  S    ++  +  +     
Sbjct: 170 LSILNTWHGRPEEKWNPQTSSFLQVLVSVQSLILVAE 206

>1zuo_A Hypothetical protein LOC92912; ligase, ubiquitin-conjugating enzyme, structural genomics consortium ,SGC; 1.80A {Homo sapiens} SCOP: d.20.1.1 PDB: 2qgx_A Length = 186

 Score = 71.5 bits (175), Expect = 4e-15
 Identities = 19/163 (11%), Positives = 52/163 (31%), Gaps = 46/163 (28%)

Query: 10  NPAVKRILQEVKEMQSNPSDD---FMSLPLEENIFEWQFAIRG-PGDTEFEGGIYHG--- 62
             A  R+++E++++  + S     +    + +++++W   ++    D+     +      
Sbjct: 26  VQASDRLMKELRDIYRSQSYKTGIYSVELINDSLYDWHVKLQKVDPDSPLHSDLQILKEK 85

Query: 63  --------RIQLPAEYPFKPPSFMLLTVRCCSLMEHKSYCLCADYGVRTNVCAFFPPQPN 114
                          +PF PP      VR    +    Y L                   
Sbjct: 86  EGIEYILLNFSFKDNFPFDPP-----FVRVVLPVLSGGYVL-----------------GG 123

Query: 115 GRFETQTKICLSISNHHPEHWQPSWSVRTALVALIAFMPTNPN 157
           G       +C+ +     + W  ++S+ + ++ + A +     
Sbjct: 124 GA------LCMELL--TKQGWSSAYSIESVIMQINATL-VKGK 157

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 43.7 bits (102), Expect = 7e-05
 Identities = 57/381 (14%), Positives = 105/381 (27%), Gaps = 106/381 (27%)

Query: 3   EDRYNLKNP--AVKRILQEVKEMQSNPSDDFMSLPLEENIFEW-----QFAIRGPGDTEF 55
           +     K+      R+   +   Q      F+   L  N +++     +   R P     
Sbjct: 52  DHIIMSKDAVSGTLRLFWTLLSKQEEMVQKFVEEVLRIN-YKFLMSPIKTEQRQPSMMTR 110

Query: 56  EGGIYHGRI----QLPAEYPFKPPSFMLLTVRCCSLME---------H------KSYCL- 95
                  R+    Q+ A+Y         L +R   L+E                K+  + 
Sbjct: 111 MYIEQRDRLYNDNQVFAKYNVSRLQ-PYLKLRQA-LLELRPAKNVLIDGVLGSGKT-WVA 167

Query: 96  ---CADYGVRTNVCAFFPPQ-----------PNGRFETQTKICLSI-------SNHHPEH 134
              C  Y V+         +           P    E   K+   I       S+H    
Sbjct: 168 LDVCLSYKVQCK----MDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNI 223

Query: 135 WQPSWSVRTALVALIAFMPTNPNGALGSLD--YKKEERRALAIKSREAAPKFGTPERQKL 192
                S++  L  L+   P   N  L  L      +   A  +  +       T   +++
Sbjct: 224 KLRIHSIQAELRRLLKSKP-YEN-CLLVLLNVQNAKAWNAFNLSCKILL----TTRFKQV 277

Query: 193 IDEIHEYMLSKAPPVPQLSTCEEQPGNREGEAQASSIDAMVTGAGEGLPAPVGDRIIEEV 252
            D +       A     +S           E              + L      + ++  
Sbjct: 278 TDFL------SAATTTHISLDHHSMTLTPDEV-------------KSLLL----KYLDCR 314

Query: 253 QEDLPASM-NPNP----VVAGTSREVPA---NASGVQLQPKPETR-----VQKPADDR-L 298
            +DLP  +   NP    ++A + R+  A   N   V              V +PA+ R +
Sbjct: 315 PQDLPREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKM 374

Query: 299 FTWAA-----VGLTIAILVLL 314
           F   +       +   +L L+
Sbjct: 375 FDRLSVFPPSAHIPTILLSLI 395

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	332
1zdn_A	158	Ubiquitin-conjugating enzyme E2S; structural genom	100.0
4gpr_A	151	Ubiquitin-conjugating enzyme family protein; ubiqu	100.0
2c2v_B	154	Ubiquitin-conjugating enzyme E2 N; chaperone, heat	100.0
2aak_A	152	UBC1, ubiquitin conjugating enzyme; ubiquitin conj	100.0
1ayz_A	169	UBC2, ubiquitin-conjugating enzyme RAD6; ubiquitin	100.0
1yh2_A	169	HSPC150 protein similar to ubiquitin-conjugating e	100.0
1z2u_A	150	Ubiquitin-conjugating enzyme E2 2; PSI, secsg, pro	100.0
2c4o_A	165	Ubiquitin-conjugating enzyme E2 D2; thioesterifica	100.0
2ayv_A	166	Ubiquitin-conjugating enzyme E2; structural genomi	100.0
2r0j_A	149	Ubiquitin carrier protein; ubiquitin conjugating,	100.0
2ucz_A	165	UBC7, ubiquitin conjugating enzyme; ubiquitin conj	100.0
2e2c_A	156	Ubiquitin conjugating enzyme; ubiquitin conjugatio	100.0
2bep_A	159	Ubiquitin-conjugating enzyme E2-25 kDa; ligase, E2	100.0
2f4z_A	193	Tgtwinscan_2721 - E2 domain; ubiquitin conjugating	100.0
2gjd_A	157	Ubiquitin-conjugating enzyme E2-18 kDa; UBC9P, SMT	100.0
3h8k_A	164	Ubiquitin-conjugating enzyme E2 G2; alpha beta, al	100.0
1jat_A	155	Ubiquitin-conjugating enzyme E2-17.5 kDa; UEV, lig	100.0
3rcz_B	163	SUMO-conjugating enzyme UBC9; SUMO-like domain, pr	100.0
1fxt_A	149	Ubiquitin-conjugating enzyme E2-24 kDa; ligase; NM	100.0
2grr_A	161	Ubiquitin-conjugating enzyme E2 I; ubiquitin, conj	100.0
3k9o_A	201	Ubiquitin-conjugating enzyme E2 K; E2-25K, complex	100.0
3bzh_A	194	Ubiquitin-conjugating enzyme E2 E1; structural gen	100.0
2pwq_A	216	Ubiquitin conjugating enzyme; structural genomics	100.0
3e46_A	253	Ubiquitin-conjugating enzyme E2-25 kDa; huntington	100.0
1i7k_A	179	Ubiquitin-conjugating enzyme E2 H10; ligase; 1.95A	100.0
3fn1_B	167	NEDD8-conjugating enzyme UBE2F; ligase, ATP-bindin	100.0
1wzv_A	155	Ubiquitin-conjugating enzyme E2 L6; ligase; 2.10A	100.0
1yrv_A	169	Ubiquitin-conjugating ligase MGC351130; structural	100.0
1tte_A	215	Ubiquitin-conjugating enzyme E2-24 kDa; UBC1, ubiq	100.0
3rz3_A	183	Ubiquitin-conjugating enzyme E2 R1; ubiquitin conj	100.0
2awf_A	172	Ubiquitin-conjugating enzyme E2 G1; ligase, UBL co	100.0
2onu_A	152	Ubiquitin-conjugating enzyme, putative; UBC, plasm	100.0
2y9m_A	172	Ubiquitin-conjugating enzyme E2-21 kDa; ligase-tra	100.0
1c4z_D	154	UBCH7, ubiquitin conjugating enzyme E2; bilobal st	100.0
2z5d_A	179	Ubiquitin-conjugating enzyme E2 H; UBE2H, SGC, lig	100.0
1y8x_A	160	Ubiquitin-conjugating enzyme E2 M; ubiquitin-conju	100.0
2nvu_C	180	NEDD8-conjugating enzyme UBC12; multifunction macr	100.0
2fo3_A	125	Ubiquitin-conjugating enzyme; SGC, UBC, structural	100.0
4ddg_A	399	Ubiquitin-conjugating enzyme E2 D2, ubiquitin THI	100.0
1yf9_A	171	Ubiquitin carrier protein 4; SGPP, structural geno	100.0
2f4w_A	187	Ubiquitin-conjugating enzyme E2, J2; endoplasmic r	100.0
2h2y_A	136	Ubiquitin-conjugating enzyme; structural genomics,	100.0
3o2u_A	190	NEDD8-conjugating enzyme UBC12; E2 conjugase, liga	100.0
4ds2_A	167	Ubiquitin-conjugating enzyme E2, putative; structu	100.0
3ceg_A	323	Baculoviral IAP repeat-containing protein 6; apopt	100.0
2a7l_A	136	Hypothetical ubiquitin-conjugating enzyme LOC55284	100.0
2a4d_A	160	Ubiquitin-conjugating enzyme E2 variant 1; alterna	99.98
2q0v_A	156	Ubiquitin-conjugating enzyme E2, putative; malaria	99.97
1jat_B	138	Ubiquitin-conjugating enzyme variant MMS2; UEV, li	99.97
1zuo_A	186	Hypothetical protein LOC92912; ligase, ubiquitin-c	99.97
2hlw_A	170	Ubiquitin-conjugating enzyme E2 variant 1; ubiquit	99.97
2z6o_A	172	UFM1-conjugating enzyme 1; UFC1, ubiquitin, UBL, p	99.86
3r3q_A	162	Suppressor protein STP22 of temperature-sensitive	99.54
3kpa_A	168	Probable ubiquitin fold modifier conjugating ENZY;	99.49
3obq_A	146	Tumor susceptibility gene 101 protein; protein tra	99.13
2yz0_A	138	Serine/threonine-protein kinase GCN2; A-B-B-B-B-A-	93.54
2ebm_A	128	RWD domain-containing protein 1; alpha+beta sandwi	93.25
2day_A	128	Ring finger protein 25; ligase, metal-binding, UB1	92.47
3zqs_A	186	E3 ubiquitin-protein ligase fancl; HET: P6G; 2.00A	90.78
2ebk_A	128	RWD domain-containing protein 3; alpha+beta sandwi	87.4
1ukx_A	137	GCN2, GCN2 EIF2alpha kinase; UBC-like fold, triple	86.76

>1zdn_A Ubiquitin-conjugating enzyme E2S; structural genomics consortium, ubiquitin-conjuga enzyme, ligase, SGC; 1.93A {Homo sapiens} SCOP: d.20.1.1

Probab=100.00  E-value=2.5e-41  Score=295.57  Aligned_cols=153  Identities=25%  Similarity=0.510  Sum_probs=139.3

Q ss_pred             CCcccCCCChHHHHHHHHHHHHHhhCCCCCeEEecCCCCceEEEEEEeCCCCCCCCCCEEEEEEEcCCCCCCCCCccccc
Q 020053            1 MAEDRYNLKNPAVKRILQEVKEMQSNPSDDFMSLPLEENIFEWQFAIRGPGDTEFEGGIYHGRIQLPAEYPFKPPSFMLL   80 (332)
Q Consensus         1 ma~~~~~m~~~a~kRL~kEl~~l~~~p~~gi~v~p~ednl~~W~v~I~GP~dTpYeGGiF~l~I~fP~~YP~~PP~V~Fl   80 (332)
                      |+....+|+..+.+||++||++|++++++||++.+.++|+++|+++|.||++|||+||+|+++|.||++||++||+|+|.
T Consensus         3 ~~~~~~~~s~~~~~RL~kEl~~l~~~~~~gi~~~~~~~~l~~w~~~i~Gp~~tpyegg~f~~~i~fp~~YP~~PP~v~f~   82 (158)
T 1zdn_A            3 MNSNVENLPPHIIRLVYKEVTTLTADPPDGIKVFPNEEDLTDLQVTIEGPEGTPYAGGLFRMKLLLGKDFPASPPKGYFL   82 (158)
T ss_dssp             -----CCSCHHHHHHHHHHHHHHHHSCCTTEEEEECSSCTTEEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCCEEEES
T ss_pred             ccccccccCHHHHHHHHHHHHHHHhCCCCCEEEEECCCChhheeEEEECCCCCCccCcEEEEEEEcCCCCCCCCCEEEec
Confidence            67778899999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cccccccccccccccccCCceeecccccCCCCCCccccCCCeEEeecCCCCCCCCCCCCCHHHHHHHHHHhCCC-CCCCh
Q 020053           81 TVRCCSLMEHKSYCLCADYGVRTNVCAFFPPQPNGRFETQTKICLSISNHHPEHWQPSWSVRTALVALIAFMPT-NPNGA  159 (332)
Q Consensus        81 T~~~~~~i~Hp~~~~~~~~~~~~n~~~~~h~~PNv~v~~~G~ICL~iL~~~~e~WsP~~ti~sVL~sI~~lL~~-nP~~~  159 (332)
                      |     +|||                      ||  |+.+|+|||++|+   ++|+|+++|++||++|++||.+ ||+++
T Consensus        83 t-----~i~H----------------------Pn--v~~~G~iCl~iL~---~~W~p~~~i~~vL~~i~~ll~~pn~~~p  130 (158)
T 1zdn_A           83 T-----KIFH----------------------PN--VGANGEICVNVLK---RDWTAELGIRHVLLTIKCLLIHPNPESA  130 (158)
T ss_dssp             S-----CCCC----------------------TT--BCTTSBBCHHHHT---TTCCTTCCHHHHHHHHHHHHHSCCGGGC
T ss_pred             c-----Cccc----------------------CC--CCCCCEEehhhcC---CCCCCCCcHHHHHHHHHHHHhCCCCCCc
Confidence            9     8888                      99  6788999999997   8999999999999999999954 66666


Q ss_pred             hh--hhHhhHHhHHHHHHHHHHHHhhhC
Q 020053          160 LG--SLDYKKEERRALAIKSREAAPKFG  185 (332)
Q Consensus       160 ~~--a~~~~~~dr~~y~~kare~~~kya  185 (332)
                      ++  ++.++++|++.|.++||+|+++||
T Consensus       131 ~n~~aa~~~~~d~~~f~~~a~~~t~~~A  158 (158)
T 1zdn_A          131 LNEEAGRLLLENYEEYAARARLLTEIHG  158 (158)
T ss_dssp             SSHHHHHHHHHCHHHHHHHHHHHHHHHC
T ss_pred             ccHHHHHHHHHCHHHHHHHHHHHHHHhC
Confidence            55  677888999999999999999986

>4gpr_A Ubiquitin-conjugating enzyme family protein; ubiquitin conjugation, EHU ehring1, thiol esterification, ligase; 1.60A {Entamoeba histolytica}

Probab=100.00  E-value=1.9e-40  Score=287.79  Aligned_cols=147  Identities=27%  Similarity=0.662  Sum_probs=137.5

Q ss_pred             ChHHHHHHHHHHHHHhhCCCCCeEEecCCCCceEEEEEEeCCCCCCCCCCEEEEEEEcCCCCCCCCCccccccccccccc
Q 020053            9 KNPAVKRILQEVKEMQSNPSDDFMSLPLEENIFEWQFAIRGPGDTEFEGGIYHGRIQLPAEYPFKPPSFMLLTVRCCSLM   88 (332)
Q Consensus         9 ~~~a~kRL~kEl~~l~~~p~~gi~v~p~ednl~~W~v~I~GP~dTpYeGGiF~l~I~fP~~YP~~PP~V~FlT~~~~~~i   88 (332)
                      +..|.+||++|+++|+++++.|+++.|.++|+++|+++|.||++|||+||+|+++|.||++||++||+|+|.|     +|
T Consensus         2 a~~a~~RL~kEl~~l~~~~~~~i~~~p~~~nl~~w~~~i~Gp~~tpyegg~f~~~i~fp~~YP~~pP~v~f~t-----~i   76 (151)
T 4gpr_A            2 AAMAMRRIQKELREIQQDPPCNCSAGPVGDDIFHWTATITGPDDSPYQGGLFFLDVHFPVDYPFKAPRVTFMT-----KV   76 (151)
T ss_dssp             CHHHHHHHHHHHHHHHHSCCTTEEEEESSSCTTEEEEEEECCSSSTTTTCEEEEEEECCTTTTSSCCEEEESS-----CC
T ss_pred             chHHHHHHHHHHHHHHhCCCCCEEEEEcCCCceEEEEEEeCCCCCCcCCCEEEEEEECCCCCCCCcceeEEec-----Cc
Confidence            4578999999999999999999999999999999999999999999999999999999999999999999999     88


Q ss_pred             cccccccccCCceeecccccCCCCCCccccCCCeEEeecCCCCCCCCCCCCCHHHHHHHHHHhCCC-CCCChhh--hhHh
Q 020053           89 EHKSYCLCADYGVRTNVCAFFPPQPNGRFETQTKICLSISNHHPEHWQPSWSVRTALVALIAFMPT-NPNGALG--SLDY  165 (332)
Q Consensus        89 ~Hp~~~~~~~~~~~~n~~~~~h~~PNv~v~~~G~ICL~iL~~~~e~WsP~~ti~sVL~sI~~lL~~-nP~~~~~--a~~~  165 (332)
                      ||                      ||  |+.+|+|||++|.   ++|+|+++|++||++|++||.+ ||+++++  ++.+
T Consensus        77 ~H----------------------Pn--v~~~G~iCl~iL~---~~W~p~~~i~~vl~~i~~ll~~p~~~~p~n~~aa~~  129 (151)
T 4gpr_A           77 YH----------------------PN--INKNGVICLDILK---DQWSPALTLSRVLLSISSLLTDPNPSDPLDPEVANV  129 (151)
T ss_dssp             CB----------------------TT--BCTTCBBCCGGGT---TTCCTTCCHHHHHHHHHHHHHCCCTTSCSSHHHHHH
T ss_pred             cc----------------------ce--ECCCCEEEccccc---CCCCCCCcHHHHHHHHHHHhcCCCCCCchhHHHHHH
Confidence            88                      99  6789999999998   8999999999999999999965 6777765  5778


Q ss_pred             hHHhHHHHHHHHHHHHhhhCCh
Q 020053          166 KKEERRALAIKSREAAPKFGTP  187 (332)
Q Consensus       166 ~~~dr~~y~~kare~~~kya~~  187 (332)
                      +++|+++|.++||+|+++||++
T Consensus       130 ~~~d~~~f~~~ar~~~~~ya~p  151 (151)
T 4gpr_A          130 LRANKKQFEDTAREWTRMYARP  151 (151)
T ss_dssp             HHHCHHHHHHHHHHHHHHHCCC
T ss_pred             HHHCHHHHHHHHHHHHHHhcCC
Confidence            8899999999999999999974

>2c2v_B Ubiquitin-conjugating enzyme E2 N; chaperone, heat-shock protein complex, E3 ligase, ubiquitiny TPR, heat-shock protein; 2.9A {Homo sapiens} SCOP: d.20.1.1

Probab=100.00  E-value=8.8e-41  Score=290.98  Aligned_cols=148  Identities=27%  Similarity=0.522  Sum_probs=136.5

Q ss_pred             CChHHHHHHHHHHHHHhhCCCCCeEEecCCCCceEEEEEEeCCCCCCCCCCEEEEEEEcCCCCCCCCCcccccccccccc
Q 020053            8 LKNPAVKRILQEVKEMQSNPSDDFMSLPLEENIFEWQFAIRGPGDTEFEGGIYHGRIQLPAEYPFKPPSFMLLTVRCCSL   87 (332)
Q Consensus         8 m~~~a~kRL~kEl~~l~~~p~~gi~v~p~ednl~~W~v~I~GP~dTpYeGGiF~l~I~fP~~YP~~PP~V~FlT~~~~~~   87 (332)
                      |+..+.+||++|+++|+++++.|+++.|.++|+++|+++|.||++|||+||+|+++|.||++||++||+|+|.|     +
T Consensus         2 ~s~~~~~RL~kEl~~l~~~~~~~i~~~~~~~~l~~w~~~i~GP~~tpyegg~f~~~i~fp~~YP~~PP~v~f~t-----~   76 (154)
T 2c2v_B            2 GSAGLPRRIIKETQRLLAEPVPGIKAEPDESNARYFHVVIAGPQDSPFEGGTFKLELFLPEEYPMAAPKVRFMT-----K   76 (154)
T ss_dssp             CSCSCCHHHHHHHHHHHHSCCTTEEEEECSSCTTEEEEEEECCTTSTTTTCEEEEEEECCTTTTSSCCEEEECS-----C
T ss_pred             ccHHHHHHHHHHHHHHHhCCCCCEEEEECCCchheEEEEEECCCCCCcCCCeEEEEEEcCCCCCCCCCEEEeec-----C
Confidence            45567899999999999999999999999999999999999999999999999999999999999999999999     8


Q ss_pred             ccccccccccCCceeecccccCCCCCCccccCCCeEEeecCCCCCCCCCCCCCHHHHHHHHHHhCCC-CCCChhh--hhH
Q 020053           88 MEHKSYCLCADYGVRTNVCAFFPPQPNGRFETQTKICLSISNHHPEHWQPSWSVRTALVALIAFMPT-NPNGALG--SLD  164 (332)
Q Consensus        88 i~Hp~~~~~~~~~~~~n~~~~~h~~PNv~v~~~G~ICL~iL~~~~e~WsP~~ti~sVL~sI~~lL~~-nP~~~~~--a~~  164 (332)
                      |||                      ||  ++.+|+|||++|+   ++|+|+++|++||++|++||.+ ||+++++  ++.
T Consensus        77 i~H----------------------Pn--v~~~G~iCl~iL~---~~W~p~~~i~~vl~~i~~ll~~pn~~~p~n~~aa~  129 (154)
T 2c2v_B           77 IYH----------------------PN--VDKLGRICLDILK---DKWSPALQIRTVLLSIQALLSAPNPDDPLANDVAE  129 (154)
T ss_dssp             CCC----------------------TT--BCTTCBBCCHHHH---TSCCTTCCHHHHHHHHHHHTTSCCCCCC--CHHHH
T ss_pred             ccc----------------------Cc--CccCCeEEchhcc---CCCCCCCcHHHHHHHHHHHHhCCCCCCcccHHHHH
Confidence            888                      99  5788999999997   8999999999999999999965 7777765  678


Q ss_pred             hhHHhHHHHHHHHHHHHhhhCCh
Q 020053          165 YKKEERRALAIKSREAAPKFGTP  187 (332)
Q Consensus       165 ~~~~dr~~y~~kare~~~kya~~  187 (332)
                      ++++|+++|.++||+|+++||..
T Consensus       130 ~~~~d~~~f~~~ar~~~~~~a~~  152 (154)
T 2c2v_B          130 QWKTNEAQAIETARAWTRLYAMN  152 (154)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHSSC
T ss_pred             HHHHCHHHHHHHHHHHHHHhcCC
Confidence            88899999999999999999975

>2aak_A UBC1, ubiquitin conjugating enzyme; ubiquitin conjugation, ligase; 2.40A {Arabidopsis thaliana} SCOP: d.20.1.1 PDB: 1jas_A 2y4w_A 2yb6_A 2ybf_A 1q34_A 1z3d_A

Probab=100.00  E-value=2.3e-40  Score=287.27  Aligned_cols=148  Identities=29%  Similarity=0.602  Sum_probs=137.4

Q ss_pred             CChHHHHHHHHHHHHHhhCCCCCeEEecCCCCceEEEEEEeCCCCCCCCCCEEEEEEEcCCCCCCCCCcccccccccccc
Q 020053            8 LKNPAVKRILQEVKEMQSNPSDDFMSLPLEENIFEWQFAIRGPGDTEFEGGIYHGRIQLPAEYPFKPPSFMLLTVRCCSL   87 (332)
Q Consensus         8 m~~~a~kRL~kEl~~l~~~p~~gi~v~p~ednl~~W~v~I~GP~dTpYeGGiF~l~I~fP~~YP~~PP~V~FlT~~~~~~   87 (332)
                      |++.+.+||++|+++|+++++.|+.+.|.++|+++|+++|.||++|||+||+|+++|.||++||++||+|+|.|     +
T Consensus         1 Ms~~a~~RL~~E~~~l~~~~~~~i~~~~~~~~l~~w~~~i~Gp~~tpyegg~f~~~i~fp~~YP~~PP~v~f~t-----~   75 (152)
T 2aak_A            1 MSTPARKRLMRDFKRLQQDPPAGISGAPQDNNIMLWNAVIFGPDDTPWDGGTFKLSLQFSEDYPNKPPTVRFVS-----R   75 (152)
T ss_dssp             CCCHHHHHHHHHHHHHHHSCCTTEEEEEETTEEEEEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCCEEEESS-----C
T ss_pred             CChHHHHHHHHHHHHHHhCCCCCEEEEeCCCCccEEEEEEeCCCCCCccCCEEEEEEECCCCCCCCCCEEEEec-----C
Confidence            67789999999999999999999999999999999999999999999999999999999999999999999999     8


Q ss_pred             ccccccccccCCceeecccccCCCCCCccccCCCeEEeecCCCCCCCCCCCCCHHHHHHHHHHhCCC-CCCChhh--hhH
Q 020053           88 MEHKSYCLCADYGVRTNVCAFFPPQPNGRFETQTKICLSISNHHPEHWQPSWSVRTALVALIAFMPT-NPNGALG--SLD  164 (332)
Q Consensus        88 i~Hp~~~~~~~~~~~~n~~~~~h~~PNv~v~~~G~ICL~iL~~~~e~WsP~~ti~sVL~sI~~lL~~-nP~~~~~--a~~  164 (332)
                      |||                      ||  |+.+|.|||++|.   ++|+|+++|++||.+|++||.+ ||+++++  ++.
T Consensus        76 i~H----------------------Pn--v~~~G~iCl~iL~---~~W~p~~~i~~vl~~i~~ll~~p~~~~p~n~~aa~  128 (152)
T 2aak_A           76 MFH----------------------PN--IYADGSICLDILQ---NQWSPIYDVAAILTSIQSLLCDPNPNSPANSEAAR  128 (152)
T ss_dssp             CCC----------------------TT--BCTTSBBCCGGGT---TSCCTTCCHHHHHHHHHHHHTSCCTTSCSSHHHHH
T ss_pred             ccc----------------------CC--CCCCCEEechhhc---CCCCCCCcHHHHHHHHHHHHhCCCCCccccHHHHH
Confidence            888                      99  6779999999997   8999999999999999999965 6666655  577


Q ss_pred             hhHHhHHHHHHHHHHHHhhhCCh
Q 020053          165 YKKEERRALAIKSREAAPKFGTP  187 (332)
Q Consensus       165 ~~~~dr~~y~~kare~~~kya~~  187 (332)
                      ++++|+++|.++||+|+++|+..
T Consensus       129 ~~~~~~~~y~~~~~~~~~~~a~~  151 (152)
T 2aak_A          129 MYSESKREYNRRVRDVVEQSWTA  151 (152)
T ss_dssp             HHHHCHHHHHHHHHHHHHHHCC-
T ss_pred             HHHHCHHHHHHHHHHHHHHHccc
Confidence            78899999999999999999865

>1ayz_A UBC2, ubiquitin-conjugating enzyme RAD6; ubiquitin conjugation; 2.60A {Saccharomyces cerevisiae} SCOP: d.20.1.1

Probab=100.00  E-value=1.2e-40  Score=294.88  Aligned_cols=149  Identities=27%  Similarity=0.567  Sum_probs=137.6

Q ss_pred             CChHHHHHHHHHHHHHhhCCCCCeEEecCCCCceEEEEEEeCCCCCCCCCCEEEEEEEcCCCCCCCCCcccccccccccc
Q 020053            8 LKNPAVKRILQEVKEMQSNPSDDFMSLPLEENIFEWQFAIRGPGDTEFEGGIYHGRIQLPAEYPFKPPSFMLLTVRCCSL   87 (332)
Q Consensus         8 m~~~a~kRL~kEl~~l~~~p~~gi~v~p~ednl~~W~v~I~GP~dTpYeGGiF~l~I~fP~~YP~~PP~V~FlT~~~~~~   87 (332)
                      |++.+.+||++||++|+++++.||.+.|.++|+++|+++|.||++|||+||+|+|+|.||++||++||+|+|+|     +
T Consensus         1 Ms~~a~~RL~kEl~~l~~~~~~gi~~~p~~~nl~~W~~~I~GP~~tpYegG~f~l~i~fp~~YP~~PP~v~F~t-----~   75 (169)
T 1ayz_A            1 MSTPARRRLMRDFKRMKEDAPPGVSASPLPDNVMVWNAMIIGPADTPYEDGTFRLLLEFDEEYPNKPPHVKFLS-----E   75 (169)
T ss_dssp             -CCHHHHHHHHHHHHHHHSCCTTEEEEEETTEEEEEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCCEEEESS-----C
T ss_pred             CChHHHHHHHHHHHHHHhCCCCCEEEEecCCccccceEEEECCCCCCcCCCEEEEEEECcccCCCCCCcccccc-----C
Confidence            66789999999999999999999999999999999999999999999999999999999999999999999999     8


Q ss_pred             ccccccccccCCceeecccccCCCCCCccccCCCeEEeecCCCCCCCCCCCCCHHHHHHHHHHhCCC-CCCChhh--hhH
Q 020053           88 MEHKSYCLCADYGVRTNVCAFFPPQPNGRFETQTKICLSISNHHPEHWQPSWSVRTALVALIAFMPT-NPNGALG--SLD  164 (332)
Q Consensus        88 i~Hp~~~~~~~~~~~~n~~~~~h~~PNv~v~~~G~ICL~iL~~~~e~WsP~~ti~sVL~sI~~lL~~-nP~~~~~--a~~  164 (332)
                      |||                      ||  |+.+|.|||++|+   +.|+|+++|++||++|++||.+ ||+++++  ++.
T Consensus        76 i~H----------------------PN--I~~~G~ICl~iL~---~~WsP~~~i~~vL~si~~ll~~Pn~~~P~n~~aa~  128 (169)
T 1ayz_A           76 MFH----------------------PN--VYANGEICLDILQ---NRWTPTYDVASILTSIQSLFNDPNPASPANVEAAT  128 (169)
T ss_dssp             CCC----------------------TT--BCTTSBBCCGGGT---TTCCTTCCHHHHHHHHHHHHTCCCCSSCSSHHHHH
T ss_pred             Ccc----------------------CC--CCCCCeEeehhhc---cCCCCcCcHHHHHHHHHHHHhCCCCCcHHHHHHHH
Confidence            888                      99  6789999999998   8999999999999999999965 6666665  577


Q ss_pred             hhHHhHHHHHHHHHHHHhhhCChh
Q 020053          165 YKKEERRALAIKSREAAPKFGTPE  188 (332)
Q Consensus       165 ~~~~dr~~y~~kare~~~kya~~~  188 (332)
                      +++++++.|.++||+|+++|+...
T Consensus       129 ~~~~d~~~y~~~~r~~~~~~a~~~  152 (169)
T 1ayz_A          129 LFKDHKSQYVKRVKETVEKSWEDD  152 (169)
T ss_dssp             HHHHCHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHCHHHHHHHHHHHHHHHcCCC
Confidence            788999999999999999998544

>1yh2_A HSPC150 protein similar to ubiquitin-conjugating enzyme; structural genomics consortium, HSCP150, ligase, SGC; 2.00A {Homo sapiens} SCOP: d.20.1.1

Probab=100.00  E-value=5.7e-40  Score=289.99  Aligned_cols=152  Identities=24%  Similarity=0.478  Sum_probs=139.3

Q ss_pred             ChHHHHHHHHHHHHHhhCCCCCeEEecCCCCceEEEEEEeCCCCCCCCCCEEEEEEEcCCCCCCCCCccccccccccccc
Q 020053            9 KNPAVKRILQEVKEMQSNPSDDFMSLPLEENIFEWQFAIRGPGDTEFEGGIYHGRIQLPAEYPFKPPSFMLLTVRCCSLM   88 (332)
Q Consensus         9 ~~~a~kRL~kEl~~l~~~p~~gi~v~p~ednl~~W~v~I~GP~dTpYeGGiF~l~I~fP~~YP~~PP~V~FlT~~~~~~i   88 (332)
                      ++.+.+||++||++|+++++.||++.+.++|+++|+++|.||++|||+||+|+|+|.||++||++||+|+|.|     +|
T Consensus         2 s~~~~~RL~kEl~~l~~~~~~gi~~~~~~~~l~~w~~~I~GP~~tpYegg~f~~~i~fp~~YP~~PP~v~f~t-----~i   76 (169)
T 1yh2_A            2 SMQRASRLKRELHMLATEPPPGITCWQDKDQMDDLRAQILGGANTPYEKGVFKLEVIIPERYPFEPPQIRFLT-----PI   76 (169)
T ss_dssp             CHHHHHHHHHHHHHHHHSCCTTEEEEESSSCTTEEEEEEECCTTSTTTTCEEEEEEECCTTTTSSCCEEEESS-----CC
T ss_pred             chHHHHHHHHHHHHHHhCCCCCEEEEeCCCchheEEEEEECCCCCCccCCEEEEEEEeCCCCCCCCcEEEeec-----CC
Confidence            4578999999999999999999999999999999999999999999999999999999999999999999999     88


Q ss_pred             cccccccccCCceeecccccCCCCCCccccCCCeEEeecCCCCC-CCCCCCCCHHHHHHHHHHhCCC-CCCChhh--hhH
Q 020053           89 EHKSYCLCADYGVRTNVCAFFPPQPNGRFETQTKICLSISNHHP-EHWQPSWSVRTALVALIAFMPT-NPNGALG--SLD  164 (332)
Q Consensus        89 ~Hp~~~~~~~~~~~~n~~~~~h~~PNv~v~~~G~ICL~iL~~~~-e~WsP~~ti~sVL~sI~~lL~~-nP~~~~~--a~~  164 (332)
                      ||                      ||  |+.+|+|||++|+.++ ++|+|+++|++||++|++||.+ ||+++++  ++.
T Consensus        77 ~H----------------------PN--v~~~G~iCl~iL~~~~~~~W~p~~~i~~vL~si~~ll~~p~~~~p~n~~aa~  132 (169)
T 1yh2_A           77 YH----------------------PN--IDSAGRICLDVLKLPPKGAWRPSLNIATVLTSIQLLMSEPNPDDPLMADISS  132 (169)
T ss_dssp             CB----------------------TT--BCTTCBBCCGGGSCTTTSCCCTTSCHHHHHHHHHHHHHSCCTTSCSCHHHHH
T ss_pred             cc----------------------cc--CCcCCeEecccccCCcccCCCCCCcHHHHHHHHHHHHhCCCCcchHhHHHHH
Confidence            88                      99  6789999999998654 7899999999999999999964 6676655  567


Q ss_pred             hhHHhHHHHHHHHHHHHhhhCChhH
Q 020053          165 YKKEERRALAIKSREAAPKFGTPER  189 (332)
Q Consensus       165 ~~~~dr~~y~~kare~~~kya~~~~  189 (332)
                      ++++|+++|.++||+|+++||....
T Consensus       133 ~~~~~~~~y~~~~r~~~~~~a~~~~  157 (169)
T 1yh2_A          133 EFKYNKPAFLKNARQWTEKHARQKQ  157 (169)
T ss_dssp             HHHHCHHHHHHHHHHHHHHHSCCC-
T ss_pred             HHHhhHHHHHHHHHHHHHHHccccc
Confidence            7889999999999999999998653

>1z2u_A Ubiquitin-conjugating enzyme E2 2; PSI, secsg, proteosome pathway, structural genomics, protein structure initiative; 1.10A {Caenorhabditis elegans} SCOP: d.20.1.1 PDB: 3tgd_A 2esk_A 1ur6_A 1w4u_A 4a49_B* 4a4b_C* 4a4c_C* 3eb6_B 3l1y_A 2esp_A 2eso_A 2esq_A 3l1z_A 2oxq_A 3a33_A 4ddg_D 4ddi_D 1x23_A 3rpg_A 2fuh_A ...

Probab=100.00  E-value=5.3e-40  Score=284.46  Aligned_cols=145  Identities=29%  Similarity=0.651  Sum_probs=135.2

Q ss_pred             hHHHHHHHHHHHHHhhCCCCCeEEecCCCCceEEEEEEeCCCCCCCCCCEEEEEEEcCCCCCCCCCcccccccccccccc
Q 020053           10 NPAVKRILQEVKEMQSNPSDDFMSLPLEENIFEWQFAIRGPGDTEFEGGIYHGRIQLPAEYPFKPPSFMLLTVRCCSLME   89 (332)
Q Consensus        10 ~~a~kRL~kEl~~l~~~p~~gi~v~p~ednl~~W~v~I~GP~dTpYeGGiF~l~I~fP~~YP~~PP~V~FlT~~~~~~i~   89 (332)
                      ..+.+||++|+++|+++++.|+.+.|.++|+++|+++|.||++|||+||+|+++|.||++||++||+|+|.|     +||
T Consensus         3 ~~~~~RL~kEl~~l~~~~~~~~~~~~~~~~l~~w~~~i~Gp~~tpyegg~f~~~i~fp~~YP~~PP~v~f~t-----~i~   77 (150)
T 1z2u_A            3 HMALKRIQKELQDLGRDPPAQCSAGPVGDDLFHWQATIMGPPESPYQGGVFFLTIHFPTDYPFKPPKVAFTT-----RIY   77 (150)
T ss_dssp             CHHHHHHHHHHHHHHHSCCSSEEEEEETTEEEEEEEEEECCTTSTTTTCEEEEEEECCTTTTSSCCEEEESS-----CCC
T ss_pred             hHHHHHHHHHHHHHHhCCCCCEEEEECCCcceEEEEEEECCCCCCcCCCEEEEEEECCCCCCCCCcEEEEec-----Ccc
Confidence            458899999999999999999999999999999999999999999999999999999999999999999999     888


Q ss_pred             ccccccccCCceeecccccCCCCCCccccCCCeEEeecCCCCCCCCCCCCCHHHHHHHHHHhCCC-CCCChhh--hhHhh
Q 020053           90 HKSYCLCADYGVRTNVCAFFPPQPNGRFETQTKICLSISNHHPEHWQPSWSVRTALVALIAFMPT-NPNGALG--SLDYK  166 (332)
Q Consensus        90 Hp~~~~~~~~~~~~n~~~~~h~~PNv~v~~~G~ICL~iL~~~~e~WsP~~ti~sVL~sI~~lL~~-nP~~~~~--a~~~~  166 (332)
                      |                      ||  |+.+|+|||++|+   ++|+|+++|++||++|++||.+ ||+++++  ++.++
T Consensus        78 H----------------------Pn--v~~~G~iCl~iL~---~~W~p~~~i~~vl~~i~~ll~~pn~~~p~n~~aa~~~  130 (150)
T 1z2u_A           78 H----------------------PN--INSNGSICLDILR---SQWSPALTISKVLLSICSLLCDPNPDDPLVPEIARIY  130 (150)
T ss_dssp             B----------------------TT--BCTTCBBCCGGGT---TTCCTTCCHHHHHHHHHHHHHSCCTTSCSCHHHHHHH
T ss_pred             c----------------------Cc--CCCCCeEeecccc---CCCCCCCCHHHHHHHHHHHhhCCCCCCccCHHHHHHH
Confidence            8                      99  6789999999998   8999999999999999999964 6776655  56778


Q ss_pred             HHhHHHHHHHHHHHHhhhCC
Q 020053          167 KEERRALAIKSREAAPKFGT  186 (332)
Q Consensus       167 ~~dr~~y~~kare~~~kya~  186 (332)
                      ++|+++|.+++|+|+++||+
T Consensus       131 ~~~~~~f~~~~~~~~~~~a~  150 (150)
T 1z2u_A          131 KTDRERYNQLAREWTQKYAM  150 (150)
T ss_dssp             HHCHHHHHHHHHHHHHHHCC
T ss_pred             HHHHHHHHHHHHHHHHHHhC
Confidence            89999999999999999984

>2c4o_A Ubiquitin-conjugating enzyme E2 D2; thioesterification, ligase, UBL conjugation pathway; HET: CME; 1.94A {Homo sapiens} SCOP: d.20.1.1 PDB: 2clw_A* 2c4p_A

Probab=100.00  E-value=1.1e-39  Score=287.47  Aligned_cols=148  Identities=29%  Similarity=0.635  Sum_probs=136.9

Q ss_pred             CCChHHHHHHHHHHHHHhhCCCCCeEEecCCCCceEEEEEEeCCCCCCCCCCEEEEEEEcCCCCCCCCCccccccccccc
Q 020053            7 NLKNPAVKRILQEVKEMQSNPSDDFMSLPLEENIFEWQFAIRGPGDTEFEGGIYHGRIQLPAEYPFKPPSFMLLTVRCCS   86 (332)
Q Consensus         7 ~m~~~a~kRL~kEl~~l~~~p~~gi~v~p~ednl~~W~v~I~GP~dTpYeGGiF~l~I~fP~~YP~~PP~V~FlT~~~~~   86 (332)
                      ...+.+.+||++|+++|+++++.||++.|.++|+++|+++|.||++|||+||+|+++|.||++||++||+|+|.|     
T Consensus        15 ~~~~~~~~RL~kEl~~l~~~~~~gi~~~p~~~nl~~W~~~I~GP~~TpYegg~f~l~i~fp~~YP~~PP~v~F~T-----   89 (165)
T 2c4o_A           15 PRGSMALKRIHKELNDLARDPPAQCSAGPVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYPFKPPKVAFTT-----   89 (165)
T ss_dssp             -CCHHHHHHHHHHHHHHHSSCCTTEEEEESSSCTTEEEEEEECCTTSTTTTCEEEEEEECCTTTTSSCCEEEECS-----
T ss_pred             cCCcHHHHHHHHHHHHHHhCCCCCEEEEEcCCCcceeEEEEECCCCCCccCceEEEEEECCCcCCCCCCEEEEec-----
Confidence            345679999999999999999999999999999999999999999999999999999999999999999999999     


Q ss_pred             cccccccccccCCceeecccccCCCCCCccccCCCeEEeecCCCCCCCCCCCCCHHHHHHHHHHhCCC-CCCChhh--hh
Q 020053           87 LMEHKSYCLCADYGVRTNVCAFFPPQPNGRFETQTKICLSISNHHPEHWQPSWSVRTALVALIAFMPT-NPNGALG--SL  163 (332)
Q Consensus        87 ~i~Hp~~~~~~~~~~~~n~~~~~h~~PNv~v~~~G~ICL~iL~~~~e~WsP~~ti~sVL~sI~~lL~~-nP~~~~~--a~  163 (332)
                      +|||                      ||  |+.+|+|||++|+   ++|+|+++|++||++|++||.+ ||+++++  ++
T Consensus        90 ~i~H----------------------Pn--V~~~G~ICl~iL~---~~W~P~~ti~~vL~si~~ll~~pn~~~P~n~~aa  142 (165)
T 2c4o_A           90 RIYH----------------------PN--INSNGSICLDILR---SQWSPALTISKVLLSICSLLCDPNPDDPLVPEIA  142 (165)
T ss_dssp             CCCB----------------------TT--BCTTCBBCCGGGT---TTCCTTCCHHHHHHHHHHHHHSCCTTSCSSHHHH
T ss_pred             CCcC----------------------Cc--CCCCCeEeehhhc---CCCCCcCcHHHHHHHHHHHHhCCCCCccccHHHH
Confidence            8888                      99  6789999999998   8999999999999999999964 6777655  56


Q ss_pred             HhhHHhHHHHHHHHHHHHhhhCC
Q 020053          164 DYKKEERRALAIKSREAAPKFGT  186 (332)
Q Consensus       164 ~~~~~dr~~y~~kare~~~kya~  186 (332)
                      .++++|+++|.++||+|+++||+
T Consensus       143 ~~~~~d~~~y~~~ar~~~~~~a~  165 (165)
T 2c4o_A          143 RIYKTDREKYNRIAREWTQKYAM  165 (165)
T ss_dssp             HHHHHCHHHHHHHHHHHHHHTTC
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhC
Confidence            77889999999999999999984

>2ayv_A Ubiquitin-conjugating enzyme E2; structural genomics, structural genomics consortium, ubiquit ubiquitin-conjugating enzyme, SGC, ligase; 2.00A {Toxoplasma gondii} SCOP: d.20.1.1

Probab=100.00  E-value=8e-40  Score=288.82  Aligned_cols=147  Identities=30%  Similarity=0.654  Sum_probs=135.6

Q ss_pred             CCChHHHHHHHHHHHHHhhCCCCCeEEecCCCCceEEEEEEeCCCCCCCCCCEEEEEEEcCCCCCCCCCccccccccccc
Q 020053            7 NLKNPAVKRILQEVKEMQSNPSDDFMSLPLEENIFEWQFAIRGPGDTEFEGGIYHGRIQLPAEYPFKPPSFMLLTVRCCS   86 (332)
Q Consensus         7 ~m~~~a~kRL~kEl~~l~~~p~~gi~v~p~ednl~~W~v~I~GP~dTpYeGGiF~l~I~fP~~YP~~PP~V~FlT~~~~~   86 (332)
                      ...+.+.+||++|+++|+++++.||.+.|.++|+++|+++|.||++|||+||+|+|+|.||++||++||+|+|+|     
T Consensus        17 ~~~~~~~~RL~kEl~~l~~~~~~gi~~~~~~~nl~~W~~~I~GP~~TpYegG~f~l~i~fp~~YP~~PP~V~F~T-----   91 (166)
T 2ayv_A           17 LYFQGALKRINKELNDLSKDPPTNCSAGPVGDDMFHWQATIMGPEDSPYSGGVFFLNIHFPSDYPFKPPKVNFTT-----   91 (166)
T ss_dssp             --CTTHHHHHHHHHHHHHHSCCTTEEEEECSSCTTEEEEEEECCTTSTTTTCEEEEEEECCTTTTSSCCEEEECS-----
T ss_pred             ccCcHHHHHHHHHHHHHHhCCCCCEEEEEcCCCcceeeEEEECCCCCCcCCCEEEEEEeCCCcCCCCCceeeecc-----
Confidence            345568999999999999999999999999999999999999999999999999999999999999999999999     


Q ss_pred             cccccccccccCCceeecccccCCCCCCccccCCCeEEeecCCCCCCCCCCCCCHHHHHHHHHHhCCC-CCCChhh--hh
Q 020053           87 LMEHKSYCLCADYGVRTNVCAFFPPQPNGRFETQTKICLSISNHHPEHWQPSWSVRTALVALIAFMPT-NPNGALG--SL  163 (332)
Q Consensus        87 ~i~Hp~~~~~~~~~~~~n~~~~~h~~PNv~v~~~G~ICL~iL~~~~e~WsP~~ti~sVL~sI~~lL~~-nP~~~~~--a~  163 (332)
                      +|||                      ||  |+.+|.|||++|+   ++|+|+++|++||++|++||.+ ||+++++  ++
T Consensus        92 ~i~H----------------------PN--I~~~G~ICL~iL~---~~WsP~~ti~~vL~sI~sll~~pn~~~Pln~~aa  144 (166)
T 2ayv_A           92 KIYH----------------------PN--INSQGAICLDILK---DQWSPALTISKVLLSISSLLTDPNPDDPLVPEIA  144 (166)
T ss_dssp             CCCB----------------------TT--BCTTCBBCCGGGT---TTCCTTCCHHHHHHHHHHHHHSCCTTSCSCHHHH
T ss_pred             CCcC----------------------Cc--CCCCCeEEccccc---ccCCCCCcHHHHHHHHHHHHhCCCCCchhhHHHH
Confidence            8888                      99  6789999999998   8999999999999999999964 6666655  57


Q ss_pred             HhhHHhHHHHHHHHHHHHhhhC
Q 020053          164 DYKKEERRALAIKSREAAPKFG  185 (332)
Q Consensus       164 ~~~~~dr~~y~~kare~~~kya  185 (332)
                      .++++|++.|.++||+|+++||
T Consensus       145 ~l~~~d~~~f~~~ar~~~~~~A  166 (166)
T 2ayv_A          145 HLYKSDRMRYDQTAREWSQKYA  166 (166)
T ss_dssp             HHHHHCHHHHHHHHHHHHHHHC
T ss_pred             HHHHHCHHHHHHHHHHHHHHhC
Confidence            7888999999999999999986

>2r0j_A Ubiquitin carrier protein; ubiquitin conjugating, malaria, ligas conjugation pathway, structural genomics, structural genomi consortium; 1.85A {Plasmodium falciparum} PDB: 3e95_A

Probab=100.00  E-value=6.2e-40  Score=283.99  Aligned_cols=143  Identities=29%  Similarity=0.628  Sum_probs=133.6

Q ss_pred             HHHHHHHHHHHhhCCCCCeEEecCCCCceEEEEEEeCCCCCCCCCCEEEEEEEcCCCCCCCCCccccccccccccccccc
Q 020053           13 VKRILQEVKEMQSNPSDDFMSLPLEENIFEWQFAIRGPGDTEFEGGIYHGRIQLPAEYPFKPPSFMLLTVRCCSLMEHKS   92 (332)
Q Consensus        13 ~kRL~kEl~~l~~~p~~gi~v~p~ednl~~W~v~I~GP~dTpYeGGiF~l~I~fP~~YP~~PP~V~FlT~~~~~~i~Hp~   92 (332)
                      .+||++|+++|+++++.|+++.+.++|+++|+++|.||++|||+||+|+++|.||++||++||+|+|.|     +|||  
T Consensus         3 ~~RL~kEl~~l~~~~~~~i~~~~~~~~l~~w~~~i~Gp~~tpyegg~f~~~i~fp~~YP~~PP~v~f~t-----~i~H--   75 (149)
T 2r0j_A            3 PRRITKETQNLANEPPPGIMAVPVPENYRHFNILINGPDGTPYEGGTYKLELFLPEQYPMEPPKVRFLT-----KIYH--   75 (149)
T ss_dssp             CHHHHHHHHHHHHSCCTTEEEEEETTEEEEEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCCEEEECS-----CCCB--
T ss_pred             HHHHHHHHHHHHhCCCCCEEEEECCCcccEEEEEEECCCCCCcCCCEEEEEEeCCcccCCCCCeeEecc-----CCcc--
Confidence            589999999999999999999999999999999999999999999999999999999999999999999     8888  


Q ss_pred             cccccCCceeecccccCCCCCCccccCCCeEEeecCCCCCCCCCCCCCHHHHHHHHHHhCCC-CCCChhh--hhHhhHHh
Q 020053           93 YCLCADYGVRTNVCAFFPPQPNGRFETQTKICLSISNHHPEHWQPSWSVRTALVALIAFMPT-NPNGALG--SLDYKKEE  169 (332)
Q Consensus        93 ~~~~~~~~~~~n~~~~~h~~PNv~v~~~G~ICL~iL~~~~e~WsP~~ti~sVL~sI~~lL~~-nP~~~~~--a~~~~~~d  169 (332)
                                          ||  |+.+|+|||++|+   +.|+|+++|++||++|++||.+ ||+++++  ++.++++|
T Consensus        76 --------------------Pn--v~~~G~iCl~iL~---~~W~p~~~i~~vl~~i~~ll~~p~~~~p~n~~aa~~~~~~  130 (149)
T 2r0j_A           76 --------------------PN--IDKLGRICLDILK---DKWSPALQIRTVLLSIQALLSSPEPDDPLDSKVAEHFKQD  130 (149)
T ss_dssp             --------------------TT--BCTTCBBCCGGGT---TTCCTTSCHHHHHHHHHHHHHSCCTTSCSSCHHHHHHHHC
T ss_pred             --------------------CC--CCCCCEEechhcC---CCCCCCCcHHHHHHHHHHHHhCCCCCCchhHHHHHHHHHC
Confidence                                99  6788999999998   8999999999999999999964 6666655  57778899


Q ss_pred             HHHHHHHHHHHHhhhCCh
Q 020053          170 RRALAIKSREAAPKFGTP  187 (332)
Q Consensus       170 r~~y~~kare~~~kya~~  187 (332)
                      ++.|.++||+|+++||..
T Consensus       131 ~~~f~~~~~~~~~~~a~~  148 (149)
T 2r0j_A          131 KNDAEHVARQWNKIYANN  148 (149)
T ss_dssp             HHHHHHHHHHHHHHHSCC
T ss_pred             HHHHHHHHHHHHHHHccC
Confidence            999999999999999964

>2ucz_A UBC7, ubiquitin conjugating enzyme; ubiquitin conjugation, ligase, yeast; 2.93A {Saccharomyces cerevisiae} SCOP: d.20.1.1

Probab=100.00  E-value=9.9e-40  Score=286.80  Aligned_cols=150  Identities=24%  Similarity=0.539  Sum_probs=134.7

Q ss_pred             CChHHHHHHHHHHHHHhhCCCCCeEEecCC-CCceEEEEEEeCCCCCCCCCCEEEEEEEcCCCCCCCCCccccccccccc
Q 020053            8 LKNPAVKRILQEVKEMQSNPSDDFMSLPLE-ENIFEWQFAIRGPGDTEFEGGIYHGRIQLPAEYPFKPPSFMLLTVRCCS   86 (332)
Q Consensus         8 m~~~a~kRL~kEl~~l~~~p~~gi~v~p~e-dnl~~W~v~I~GP~dTpYeGGiF~l~I~fP~~YP~~PP~V~FlT~~~~~   86 (332)
                      |++.+.+||++|+++|+++++.||++.|.+ +|+++|+++|.||++|||+||+|+++|.||++||++||+|+|.|     
T Consensus         1 M~~~a~~RL~kEl~~l~~~~~~gi~~~~~~~~~l~~w~~~i~GP~~tpYegg~f~~~i~fp~~YP~~PP~v~f~t-----   75 (165)
T 2ucz_A            1 MSKTAQKRLLKELQQLIKDSPPGIVAGPKSENNIFIWDCLIQGPPDTPYADGVFNAKLEFPKDYPLSPPKLTFTP-----   75 (165)
T ss_dssp             -CHHHHHHHHHHHHHHHHSCCTTEEEEESSSSCCSEEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCCEEEESS-----
T ss_pred             CChHHHHHHHHHHHHHHhCCCCCEEEEECCCCCccEEEEEEECCCCCCccCcEEEEEEECCccCCCCCCEEEEeC-----
Confidence            678899999999999999999999999875 79999999999999999999999999999999999999999999     


Q ss_pred             cccccccccccCCceeecccccCCCCCCccccCCCeEEeecCCC----------CCCCCCCCCCHHHHHHHHHHhCCC-C
Q 020053           87 LMEHKSYCLCADYGVRTNVCAFFPPQPNGRFETQTKICLSISNH----------HPEHWQPSWSVRTALVALIAFMPT-N  155 (332)
Q Consensus        87 ~i~Hp~~~~~~~~~~~~n~~~~~h~~PNv~v~~~G~ICL~iL~~----------~~e~WsP~~ti~sVL~sI~~lL~~-n  155 (332)
                      +|||                      ||  |+.+|+|||++|..          +.++|+|+++|++||++|++||.+ |
T Consensus        76 ~i~H----------------------PN--v~~~G~iCl~iL~~~~~~~~~~~~~~~~W~p~~~i~~vL~si~~ll~~Pn  131 (165)
T 2ucz_A           76 SILH----------------------PN--IYPNGEVCISILHSPGDDPNMYELAEERWSPVQSVEKILLSVMSMLSEPN  131 (165)
T ss_dssp             CCSC----------------------TT--BCTTSBBCCGGGSCCCSCTTSTTTTTTSCCTTCCHHHHHHHHHHHHHSCC
T ss_pred             CCcc----------------------CC--CCCCCcEeehhhCCccccccccCCCCCCCCCcCcHHHHHHHHHHHHhCCC
Confidence            8888                      99  67899999999942          148999999999999999999954 5


Q ss_pred             CCChhh--hhHhhHHhHHHHHHHHHHHHhhhCC
Q 020053          156 PNGALG--SLDYKKEERRALAIKSREAAPKFGT  186 (332)
Q Consensus       156 P~~~~~--a~~~~~~dr~~y~~kare~~~kya~  186 (332)
                      |+++++  ++.++++|+++|.++||+|++++..
T Consensus       132 ~~~p~n~~aa~~~~~~~~~y~~~v~~~~~~~~~  164 (165)
T 2ucz_A          132 IESGANIDACILWRDNRPEFERQVKLSILKSLG  164 (165)
T ss_dssp             GGGCCCHHHHHHHHTTHHHHHHHHHHHHHHHTT
T ss_pred             CCCchhHHHHHHHHHCHHHHHHHHHHHHHHHhh
Confidence            555544  5777889999999999999999863

>2e2c_A Ubiquitin conjugating enzyme; ubiquitin conjugation, ubiquitin carrier protein, thioester ligase; 2.00A {Spisula solidissima} SCOP: d.20.1.1

Probab=100.00  E-value=1.1e-39  Score=284.37  Aligned_cols=151  Identities=27%  Similarity=0.517  Sum_probs=136.9

Q ss_pred             CCcccCCCChHHHHHHHHHHHHHhhCCCCCeEEecCCCCceEEEEEEeCCCCCCCCCCEEEEEEEcCCCCCCCCCccccc
Q 020053            1 MAEDRYNLKNPAVKRILQEVKEMQSNPSDDFMSLPLEENIFEWQFAIRGPGDTEFEGGIYHGRIQLPAEYPFKPPSFMLL   80 (332)
Q Consensus         1 ma~~~~~m~~~a~kRL~kEl~~l~~~p~~gi~v~p~ednl~~W~v~I~GP~dTpYeGGiF~l~I~fP~~YP~~PP~V~Fl   80 (332)
                      ||+.  .|++.+.+||++|+++|+++++.||++.|.++|+++|+++|.||++|||+||+|+++|.||++||++||+|+|.
T Consensus         1 m~~~--~~~~~~~~RL~kEl~~l~~~~~~~i~~~p~~~~l~~w~~~i~Gp~~tpyegg~f~~~i~fp~~YP~~PP~v~f~   78 (156)
T 2e2c_A            1 MTTS--KERHSVSKRLQQELRTLLMSGDPGITAFPDGDNLFKWVATLDGPKDTVYESLKYKLTLEFPSDYPYKPPVVKFT   78 (156)
T ss_dssp             CCCC--CSCCCHHHHHHHHHHHHHHHCCTTEEEEESSSCTTEEEEEEECCTTSTTTTCEEEEEEECCTTTTSSCCEEEES
T ss_pred             CCcc--ccchHHHHHHHHHHHHHHhCCCCCEEEEECCCCccEEEEEEECCCCCCcCCcEEEEEEECCCCCCCCCCEEEEe
Confidence            6643  35556999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cccccccccccccccccCCceeecccccCCCCCCccccCCCeEEeecCCCCCCCCCCCCCHHHHHHHHHHhCCC-CCCCh
Q 020053           81 TVRCCSLMEHKSYCLCADYGVRTNVCAFFPPQPNGRFETQTKICLSISNHHPEHWQPSWSVRTALVALIAFMPT-NPNGA  159 (332)
Q Consensus        81 T~~~~~~i~Hp~~~~~~~~~~~~n~~~~~h~~PNv~v~~~G~ICL~iL~~~~e~WsP~~ti~sVL~sI~~lL~~-nP~~~  159 (332)
                      |     +|||                      ||  |+.+|.|||++|.   +.|+|+++|++||++|++||.+ ||+++
T Consensus        79 t-----~i~H----------------------Pn--v~~~G~iCl~iL~---~~W~p~~~i~~vL~si~~ll~~pn~~~p  126 (156)
T 2e2c_A           79 T-----PCWH----------------------PN--VDQSGNICLDILK---ENWTASYDVRTILLSLQSLLGEPNNASP  126 (156)
T ss_dssp             S-----CCCB----------------------TT--BCTTCBBCCGGGT---TTCCTTCCHHHHHHHHHHHTTSCCCSSC
T ss_pred             C-----Cccc----------------------CC--CccCceEECcccc---ccCCCCCcHHHHHHHHHHHHhCCCCCCH
Confidence            9     8888                      99  6789999999997   8999999999999999999965 66666


Q ss_pred             hh--hhHhhHHhHHHHHHHHHHHHhhhCC
Q 020053          160 LG--SLDYKKEERRALAIKSREAAPKFGT  186 (332)
Q Consensus       160 ~~--a~~~~~~dr~~y~~kare~~~kya~  186 (332)
                      ++  ++.++ +|++.|.++||+|+++|+.
T Consensus       127 ~n~~aa~~~-~d~~~y~~~~~~~~~~~~~  154 (156)
T 2e2c_A          127 LNAQAADMW-SNQTEYKKVLHEKYKTAQS  154 (156)
T ss_dssp             SCHHHHHHT-TCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHh-cCHHHHHHHHHHHHHHhcc
Confidence            55  56667 7999999999999999864

>2bep_A Ubiquitin-conjugating enzyme E2-25 kDa; ligase, E2 conjugating enzyme, protein degradatio structural proteomics in europe, spine; 1.8A {Bos taurus} SCOP: d.20.1.1 PDB: 2bf8_A

Probab=100.00  E-value=1.8e-39  Score=283.89  Aligned_cols=148  Identities=30%  Similarity=0.539  Sum_probs=136.6

Q ss_pred             CCChHHHHHHHHHHHHHhhC---CCCCeEEecCCCCceEEEEEEeCCCCCCCCCCEEEEEEEcCCCCCCCCCcccccccc
Q 020053            7 NLKNPAVKRILQEVKEMQSN---PSDDFMSLPLEENIFEWQFAIRGPGDTEFEGGIYHGRIQLPAEYPFKPPSFMLLTVR   83 (332)
Q Consensus         7 ~m~~~a~kRL~kEl~~l~~~---p~~gi~v~p~ednl~~W~v~I~GP~dTpYeGGiF~l~I~fP~~YP~~PP~V~FlT~~   83 (332)
                      .|++.+.+||++|+++|+++   ++.|+.+.+.++|+++|+++|.||++|||+||+|+++|.||++||++||+|+|.|  
T Consensus         4 ~Ms~~a~~RL~kEl~~l~~~~~~~~~~i~~~~~~~~l~~w~~~i~Gp~~tpyegg~f~~~i~fp~~YP~~PP~v~f~t--   81 (159)
T 2bep_A            4 AMANIAVQRIKREFKEVLKSEETSKNQIKVDLVDENFTELRGEIAGPPDTPYEGGRYQLEIKIPETYPFNPPKVRFIT--   81 (159)
T ss_dssp             CCCHHHHHHHHHHHHHHHHCHHHHTTSEEEEECSSSSSEEEEEEECCTTSTTTTCEEEEEEECCTTTTSSCCEEEESS--
T ss_pred             cchHHHHHHHHHHHHHHHhcCCCCCCCEEEEeCCCchheEEEEEECCCCCCccCCEEEEEEeCCCcCCCCCCEEEeeC--
Confidence            58889999999999999985   5789999999999999999999999999999999999999999999999999999  


Q ss_pred             ccccccccccccccCCceeecccccCCCCCCcccc-CCCeEEeecCCCCCCCCCCCCCHHHHHHHHHHhCCC-CCCChhh
Q 020053           84 CCSLMEHKSYCLCADYGVRTNVCAFFPPQPNGRFE-TQTKICLSISNHHPEHWQPSWSVRTALVALIAFMPT-NPNGALG  161 (332)
Q Consensus        84 ~~~~i~Hp~~~~~~~~~~~~n~~~~~h~~PNv~v~-~~G~ICL~iL~~~~e~WsP~~ti~sVL~sI~~lL~~-nP~~~~~  161 (332)
                         +|||                      ||  |+ .+|+|||++|+   ++|+|+++|++||++|++||.+ +|+++++
T Consensus        82 ---~i~H----------------------Pn--i~~~~G~iCl~iL~---~~W~p~~~i~~vl~~i~~ll~~p~~~~p~n  131 (159)
T 2bep_A           82 ---KIWH----------------------PN--ISSVTGAICLDILK---DQWAAAMTLRTVLLSLQALLAAAEPDDPQD  131 (159)
T ss_dssp             ---CCCB----------------------TT--BCTTTCBBCCGGGT---TTCCTTCCHHHHHHHHHHHHHSCCTTSCSC
T ss_pred             ---CCCc----------------------cC--CCCCCCEEeChhhh---ccCCCCCcHHHHHHHHHHHHhCCCCCCccc
Confidence               8888                      99  55 58999999998   8899999999999999999964 6666655


Q ss_pred             --hhHhhHHhHHHHHHHHHHHHhhhCC
Q 020053          162 --SLDYKKEERRALAIKSREAAPKFGT  186 (332)
Q Consensus       162 --a~~~~~~dr~~y~~kare~~~kya~  186 (332)
                        ++.++++|++.|.++||+|+++||.
T Consensus       132 ~~aa~~~~~~~~~f~~~a~~~~~~~a~  158 (159)
T 2bep_A          132 AVVANQYKQNPEMFKQTARLWAHVYAG  158 (159)
T ss_dssp             HHHHHHHHHCHHHHHHHHHHHHHHHSC
T ss_pred             HHHHHHHHHCHHHHHHHHHHHHHHhhc
Confidence              5777889999999999999999985

>2f4z_A Tgtwinscan_2721 - E2 domain; ubiquitin conjugating tgtwinscan_2721, structural genomics, structural genomics consortium, SGC; 2.11A {Toxoplasma gondii} SCOP: d.20.1.1

Probab=100.00  E-value=1.3e-39  Score=294.20  Aligned_cols=154  Identities=25%  Similarity=0.479  Sum_probs=131.6

Q ss_pred             CCcccCCCChHHHHHHHHHHHHHhhCCC-------------CCeEEecCCCCceEEEEEEeCCCCCCCCCCEEEEEEEcC
Q 020053            1 MAEDRYNLKNPAVKRILQEVKEMQSNPS-------------DDFMSLPLEENIFEWQFAIRGPGDTEFEGGIYHGRIQLP   67 (332)
Q Consensus         1 ma~~~~~m~~~a~kRL~kEl~~l~~~p~-------------~gi~v~p~ednl~~W~v~I~GP~dTpYeGGiF~l~I~fP   67 (332)
                      ||.....-.+.+.+||++||++|+++++             .||.+.+.++|+++|+++|.||++||||||+|+|+|.||
T Consensus        22 m~~~~~~~~~~a~~RL~kEl~~l~k~~~~~~~~p~~~~~~~~gi~v~~~~~nl~~W~~~I~GP~~TpYegG~f~l~i~fp  101 (193)
T 2f4z_A           22 MATAQPRGTPREQARLLKELADIQQLQRAHDSEPAATHSTSHGVSAQIVGGDIHRWRGFIAGPLGTPYEGGHFTLDIVIP  101 (193)
T ss_dssp             ----------CHHHHHHHHHHHHHHC----------------CEEEEEETTEEEEEEEEEECCTTSTTTTCEEEEEEECC
T ss_pred             ccccCCCCCCHHHHHHHHHHHHHHhCCCccccccccccCCCCcEEEEEcCCCcceEEEEEeCCCCCCcCCCEEEEEEECC
Confidence            5655555556689999999999999887             799999999999999999999999999999999999999


Q ss_pred             CCCCCCCCccccccccccccccccccccccCCceeecccccCCCCCCcccc-CCCeEEeecCCCCCCCCCCCCCHHHHHH
Q 020053           68 AEYPFKPPSFMLLTVRCCSLMEHKSYCLCADYGVRTNVCAFFPPQPNGRFE-TQTKICLSISNHHPEHWQPSWSVRTALV  146 (332)
Q Consensus        68 ~~YP~~PP~V~FlT~~~~~~i~Hp~~~~~~~~~~~~n~~~~~h~~PNv~v~-~~G~ICL~iL~~~~e~WsP~~ti~sVL~  146 (332)
                      ++||++||+|+|+|     +|||                      ||  |+ .+|.|||++|+   +.|+|+++|++||+
T Consensus       102 ~~YP~~PP~V~F~T-----~i~H----------------------PN--I~~~~G~ICL~iL~---~~WsP~~ti~~vL~  149 (193)
T 2f4z_A          102 PDYPYNPPKMKFVT-----KIWH----------------------PN--ISSQTGAICLDILK---HEWSPALTIRTALL  149 (193)
T ss_dssp             TTTTTSCCEEEESS-----CCCB----------------------TT--BCTTTCBBCCGGGT---TTCCTTSCHHHHHH
T ss_pred             CcCCCCCCeEEEec-----CCcc----------------------CC--CcCCCCEEECcccc---ccCCCCCCHHHHHH
Confidence            99999999999999     8888                      99  55 68999999998   88999999999999


Q ss_pred             HHHHhCCC-CCCChhh--hhHhhHHhHHHHHHHHHHHHhhhCC
Q 020053          147 ALIAFMPT-NPNGALG--SLDYKKEERRALAIKSREAAPKFGT  186 (332)
Q Consensus       147 sI~~lL~~-nP~~~~~--a~~~~~~dr~~y~~kare~~~kya~  186 (332)
                      +|++||.+ ||+++++  ++.+|++|++.|.++||+|+++||.
T Consensus       150 sI~sll~~pnp~~P~n~~aa~l~~~d~~~f~~~ar~~t~~ya~  192 (193)
T 2f4z_A          150 SIQAMLADPVPTDPQDAEVAKMMIENHPLFVQTAKLWTETFAK  192 (193)
T ss_dssp             HHHHHHHSCCTTSCSCHHHHHHHHHCHHHHHHHHHHHHHHHCC
T ss_pred             HHHHHHhCCCCCCcccHHHHHHHHHCHHHHHHHHHHHHHHHcc
Confidence            99999965 6776665  5778889999999999999999985

>2gjd_A Ubiquitin-conjugating enzyme E2-18 kDa; UBC9P, SMT3, crystallography, ligase; 1.75A {Saccharomyces cerevisiae} PDB: 2eke_A 3ong_B

Probab=100.00  E-value=2.3e-39  Score=282.87  Aligned_cols=149  Identities=23%  Similarity=0.493  Sum_probs=133.5

Q ss_pred             CChHHHHHHHHHHHHHhhCCCCCeEEecCC-----CCceEEEEEEeCCCCCCCCCCEEEEEEEcCCCCCCCCCccccccc
Q 020053            8 LKNPAVKRILQEVKEMQSNPSDDFMSLPLE-----ENIFEWQFAIRGPGDTEFEGGIYHGRIQLPAEYPFKPPSFMLLTV   82 (332)
Q Consensus         8 m~~~a~kRL~kEl~~l~~~p~~gi~v~p~e-----dnl~~W~v~I~GP~dTpYeGGiF~l~I~fP~~YP~~PP~V~FlT~   82 (332)
                      |++.+.+||++|+++|+++++.||.+.|.+     +|+++|+++|.||++|||+||+|+++|.||++||++||+|+|.| 
T Consensus         1 Ms~~a~~RL~kE~~~l~~~~~~g~~~~p~~~~~~~~nl~~w~~~I~Gp~~tpyegg~f~~~i~fp~~YP~~PP~v~f~t-   79 (157)
T 2gjd_A            1 MSSLCLQRLQEERKKWRKDHPFGFYAKPVKKADGSMDLQKWEAGIPGKEGTNWAGGVYPITVEYPNEYPSKPPKVKFPA-   79 (157)
T ss_dssp             --CHHHHHHHHHHHHHHHCCCTTCEEEEEECTTSCEEEEEEEEEEECCTTSTTTTBEEEEEEECCTTTTTSCCEEECCT-
T ss_pred             CChHHHHHHHHHHHHHHhCCCCCEEEEeccccCCCCcccEEEEEEECCCCCCcCCeEEEEEEEcCCCCCCCCCeeeccC-
Confidence            567899999999999999999999998875     48999999999999999999999999999999999999999999 


Q ss_pred             cccccccccccccccCCceeecccccCCCCCCccccCCCeEEeecCCCCCCCCCCCCCHHHHHHHHHHhCCC-CCCChhh
Q 020053           83 RCCSLMEHKSYCLCADYGVRTNVCAFFPPQPNGRFETQTKICLSISNHHPEHWQPSWSVRTALVALIAFMPT-NPNGALG  161 (332)
Q Consensus        83 ~~~~~i~Hp~~~~~~~~~~~~n~~~~~h~~PNv~v~~~G~ICL~iL~~~~e~WsP~~ti~sVL~sI~~lL~~-nP~~~~~  161 (332)
                          +|||                      ||  |+.+|.|||++|+.. ++|+|+++|++||++|++||.+ +|+++++
T Consensus        80 ----~i~H----------------------Pn--v~~~G~iCl~iL~~~-~~W~p~~~i~~vl~~i~~ll~~p~~~~p~n  130 (157)
T 2gjd_A           80 ----GFYH----------------------PN--VYPSGTICLSILNED-QDWRPAITLKQIVLGVQDLLDSPNPNSPAQ  130 (157)
T ss_dssp             ----TCCC----------------------TT--BCTTSBBCCGGGCTT-TTCCTTCCHHHHHHHHHHHHTSCCTTCCCC
T ss_pred             ----CCcc----------------------CC--CCCCCcEeeecccCC-CCCCCCCcHHHHHHHHHHHHhCCCCCCccC
Confidence                8888                      99  678999999999831 3799999999999999999954 5555554


Q ss_pred             --hhHhhHHhHHHHHHHHHHHHhhhCC
Q 020053          162 --SLDYKKEERRALAIKSREAAPKFGT  186 (332)
Q Consensus       162 --a~~~~~~dr~~y~~kare~~~kya~  186 (332)
                        ++.++++|++.|.++||+|+++||+
T Consensus       131 ~~aa~~~~~~~~~y~~~~~~~~~~~a~  157 (157)
T 2gjd_A          131 EPAWRSFSRNKAEYDKKVLLQAKQYSK  157 (157)
T ss_dssp             HHHHHHHHHCHHHHHHHHHHHHHHTBC
T ss_pred             HHHHHHHHHCHHHHHHHHHHHHHHhcC
Confidence              5677789999999999999999984

>3h8k_A Ubiquitin-conjugating enzyme E2 G2; alpha beta, all alpha, ligase, UBL conjugation pathway, endo reticulum, membrane, metal-binding; 1.80A {Homo sapiens} SCOP: d.20.1.1 PDB: 3fsh_A 2cyx_A 2kly_A

Probab=100.00  E-value=3.5e-39  Score=282.85  Aligned_cols=147  Identities=29%  Similarity=0.588  Sum_probs=134.4

Q ss_pred             hHHHHHHHHHHHHHhhCCCCCeEEecCCC-CceEEEEEEeCCCCCCCCCCEEEEEEEcCCCCCCCCCccccccccccccc
Q 020053           10 NPAVKRILQEVKEMQSNPSDDFMSLPLEE-NIFEWQFAIRGPGDTEFEGGIYHGRIQLPAEYPFKPPSFMLLTVRCCSLM   88 (332)
Q Consensus        10 ~~a~kRL~kEl~~l~~~p~~gi~v~p~ed-nl~~W~v~I~GP~dTpYeGGiF~l~I~fP~~YP~~PP~V~FlT~~~~~~i   88 (332)
                      +.|.+||++||++|+++++.||++.|.++ |+++|+++|.||++|||+||+|+++|.||++||++||+|+|.|     +|
T Consensus         2 ~~a~~RL~kEl~~l~~~~~~gi~~~~~~~~nl~~w~~~I~Gp~~tpyegg~f~~~i~fp~~YP~~PP~v~f~t-----~i   76 (164)
T 3h8k_A            2 GTALKRLMAEYKQLTLNPPEGIVAGPMNEENFFEWEALIMGPEDTCFEFGVFPAILSFPLDYPLSPPKMRFTC-----EM   76 (164)
T ss_dssp             CHHHHHHHHHHHHHHHSCCTTEEEEESSTTCTTEEEEEEECCTTSTTTTCEEEEEEECCTTTTSSCCEEEECS-----CC
T ss_pred             cHHHHHHHHHHHHHHhCCCCCEEEEECCCCCccEEEEEEeCCCCCCCCCCEEEEEEECCCCCCCCCCEEEEcC-----CC
Confidence            46899999999999999999999998866 9999999999999999999999999999999999999999999     88


Q ss_pred             cccccccccCCceeecccccCCCCCCccccCCCeEEeecCCC----------CCCCCCCCCCHHHHHHHHHHhCCC-CCC
Q 020053           89 EHKSYCLCADYGVRTNVCAFFPPQPNGRFETQTKICLSISNH----------HPEHWQPSWSVRTALVALIAFMPT-NPN  157 (332)
Q Consensus        89 ~Hp~~~~~~~~~~~~n~~~~~h~~PNv~v~~~G~ICL~iL~~----------~~e~WsP~~ti~sVL~sI~~lL~~-nP~  157 (332)
                      ||                      ||  |+.+|+|||++|+.          +.++|+|+++|++||++|++||.+ ||+
T Consensus        77 ~H----------------------PN--V~~~G~iCl~iL~~~~~~~~~~~~~~~~W~p~~ti~~vL~~i~~ll~~pn~~  132 (164)
T 3h8k_A           77 FH----------------------PN--IYPDGRVCISILHAPGDDPMGYESSAERWSPVQSVEKILLSVVSMLAEPNDE  132 (164)
T ss_dssp             CC----------------------TT--BCTTSBBCCGGGSCSCSCCCSCCTTCCCCCTTCCHHHHHHHHHHHHHSCCCS
T ss_pred             cc----------------------CC--CCCCCcEeeecccCcccccccccccccCCCCCCcHHHHHHHHHHHHcCCCCC
Confidence            88                      99  67899999999963          237899999999999999999965 666


Q ss_pred             Chhh--hhHhhHHhHHHHHHHHHHHHhhhC
Q 020053          158 GALG--SLDYKKEERRALAIKSREAAPKFG  185 (332)
Q Consensus       158 ~~~~--a~~~~~~dr~~y~~kare~~~kya  185 (332)
                      ++++  ++.++++|+++|.++||+|++++.
T Consensus       133 ~p~n~~aa~~~~~~~~~f~~~~~~~~~~s~  162 (164)
T 3h8k_A          133 SGANVDASKMWRDDREQFYKIAKQIVQKSL  162 (164)
T ss_dssp             SCSSHHHHHHHHHCHHHHHHHHHHHHHHHH
T ss_pred             CccCHHHHHHHHHCHHHHHHHHHHHHHHhh
Confidence            6655  677888999999999999999975

>1jat_A Ubiquitin-conjugating enzyme E2-17.5 kDa; UEV, ligase; 1.60A {Saccharomyces cerevisiae} SCOP: d.20.1.1 PDB: 1jbb_A 2gmi_A 3hct_B 3hcu_B 4dhi_D 1j7d_B 4dhj_C 4dhz_F

Probab=100.00  E-value=1.2e-39  Score=283.91  Aligned_cols=146  Identities=28%  Similarity=0.586  Sum_probs=135.2

Q ss_pred             HHHHHHHHHHHHHhhCCCCCeEEecCCCCceEEEEEEeCCCCCCCCCCEEEEEEEcCCCCCCCCCccccccccccccccc
Q 020053           11 PAVKRILQEVKEMQSNPSDDFMSLPLEENIFEWQFAIRGPGDTEFEGGIYHGRIQLPAEYPFKPPSFMLLTVRCCSLMEH   90 (332)
Q Consensus        11 ~a~kRL~kEl~~l~~~p~~gi~v~p~ednl~~W~v~I~GP~dTpYeGGiF~l~I~fP~~YP~~PP~V~FlT~~~~~~i~H   90 (332)
                      .+.+||++|+++|+++++.||++.|.++|+++|+++|.||++|||+||+|+|+|.||++||++||+|+|+|     +|||
T Consensus         5 ~~~~RL~kE~~~l~~~~~~~i~~~~~~~~l~~w~~~I~Gp~~tpyegg~f~~~i~fp~~YP~~PP~v~f~t-----~i~H   79 (155)
T 1jat_A            5 SLPKRIIKETEKLVSDPVPGITAEPHDDNLRYFQVTIEGPEQSPYEDGIFELELYLPDDYPMEAPKVRFLT-----KIYH   79 (155)
T ss_dssp             SCCHHHHHHHHHHHHSCCTTEEEEEETTEEEEEEEEEECCTTSTTTTEEEEEEEECCTTTTTSCCEEEECS-----CCCB
T ss_pred             HHHHHHHHHHHHHHhCCCCCEEEEECCCchhEEEEEEECCCCCCccCcEEEEEEEcCCCCCCCCCcceeec-----cccc
Confidence            46799999999999999999999999999999999999999999999999999999999999999999999     8888


Q ss_pred             cccccccCCceeecccccCCCCCCccccCCCeEEeecCCCCCCCCCCCCCHHHHHHHHHHhCCC-CCCChhh--hhHhhH
Q 020053           91 KSYCLCADYGVRTNVCAFFPPQPNGRFETQTKICLSISNHHPEHWQPSWSVRTALVALIAFMPT-NPNGALG--SLDYKK  167 (332)
Q Consensus        91 p~~~~~~~~~~~~n~~~~~h~~PNv~v~~~G~ICL~iL~~~~e~WsP~~ti~sVL~sI~~lL~~-nP~~~~~--a~~~~~  167 (332)
                                            ||  |+.+|.|||++|.   ++|+|+++|++||++|++||.+ ||+++++  ++.+++
T Consensus        80 ----------------------Pn--v~~~G~iCl~iL~---~~W~p~~~i~~vl~~i~~ll~~p~~~~p~n~~aa~~~~  132 (155)
T 1jat_A           80 ----------------------PN--IDRLGRICLDVLK---TNWSPALQIRTVLLSIQALLASPNPNDPLANDVAEDWI  132 (155)
T ss_dssp             ----------------------TT--BCTTCCBCCGGGT---TTCCTTCCHHHHHHHHHHHHHSCCTTSTTCCTTHHHHH
T ss_pred             ----------------------CC--CCCCCEEEchhhc---cCCCCCCCHHHHHHHHHHHHhCCCCCCcccHHHHHHHH
Confidence                                  99  6789999999997   8999999999999999999964 6666665  567778


Q ss_pred             HhHHHHHHHHHHHHhhhCChh
Q 020053          168 EERRALAIKSREAAPKFGTPE  188 (332)
Q Consensus       168 ~dr~~y~~kare~~~kya~~~  188 (332)
                      +|++.|.++||+|+++||...
T Consensus       133 ~~~~~f~~~~r~~~~~~a~~~  153 (155)
T 1jat_A          133 KNEQGAKAKAREWTKLYAKKK  153 (155)
T ss_dssp             HCHHHHHHHHHHHHHHHSEEC
T ss_pred             HCHHHHHHHHHHHHHHhcccC
Confidence            999999999999999999653

>3rcz_B SUMO-conjugating enzyme UBC9; SUMO-like domain, protein:protein interaction, protein ligase complex; HET: DNA; 1.90A {Schizosaccharomyces pombe} SCOP: d.20.1.1

Probab=100.00  E-value=3.8e-39  Score=283.73  Aligned_cols=148  Identities=24%  Similarity=0.491  Sum_probs=134.4

Q ss_pred             ChHHHHHHHHHHHHHhhCCCCCeEEecCCC-----CceEEEEEEeCCCCCCCCCCEEEEEEEcCCCCCCCCCcccccccc
Q 020053            9 KNPAVKRILQEVKEMQSNPSDDFMSLPLEE-----NIFEWQFAIRGPGDTEFEGGIYHGRIQLPAEYPFKPPSFMLLTVR   83 (332)
Q Consensus         9 ~~~a~kRL~kEl~~l~~~p~~gi~v~p~ed-----nl~~W~v~I~GP~dTpYeGGiF~l~I~fP~~YP~~PP~V~FlT~~   83 (332)
                      +.+|.+||++||++|++++++||++.|.++     |+++|+++|.||++||||||+|+++|.||++||++||+|+|+|  
T Consensus         8 ~~~~~~RL~kEl~~l~~~~p~gi~~~p~~~~d~~~nl~~W~~~I~Gp~~Tpyegg~f~l~i~fp~~YP~~pP~v~F~t--   85 (163)
T 3rcz_B            8 SSLCKTRLQEERKQWRRDHPFGFYAKPCKSSDGGLDLMNWKVGIPGKPKTSWEGGLYKLTMAFPEEYPTRPPKCRFTP--   85 (163)
T ss_dssp             -CHHHHHHHHHHHHHHHSCCTTCEEEEEECTTSSEEEEEEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCCEEEESS--
T ss_pred             cHHHHHHHHHHHHHHHhCCCCCEEEEEccCcCCCCCccEEEEEEECCCCCCcCCCEEEEEEECCCCCCCCCCEEEEeC--
Confidence            567999999999999999999999999866     9999999999999999999999999999999999999999999  


Q ss_pred             ccccccccccccccCCceeecccccCCCCCCccccCCCeEEeecCCCCCCCCCCCCCHHHHHHHHHHhCCC-CCCChhh-
Q 020053           84 CCSLMEHKSYCLCADYGVRTNVCAFFPPQPNGRFETQTKICLSISNHHPEHWQPSWSVRTALVALIAFMPT-NPNGALG-  161 (332)
Q Consensus        84 ~~~~i~Hp~~~~~~~~~~~~n~~~~~h~~PNv~v~~~G~ICL~iL~~~~e~WsP~~ti~sVL~sI~~lL~~-nP~~~~~-  161 (332)
                         +|||                      ||  |+.+|+|||++|+. .++|+|+++|++||++|++||.+ ||+++++ 
T Consensus        86 ---~i~H----------------------Pn--V~~~G~iCl~iL~~-~~~W~p~~ti~~vL~~i~~ll~~P~~~~p~n~  137 (163)
T 3rcz_B           86 ---PLFH----------------------PN--VYPSGTVCLSILNE-EEGWKPAITIKQILLGIQDLLDDPNIASPAQT  137 (163)
T ss_dssp             ---CCCS----------------------TT--BCTTSBBCCGGGCT-TTTCCTTCCHHHHHHHHHHHHTSCCTTSCSCH
T ss_pred             ---CCcc----------------------CC--CCCCCcEeccccCC-CCCcCCcCcHHHHHHHHHHHHhCCCCCCccCH
Confidence               8888                      99  67899999999972 24699999999999999999954 5566554 


Q ss_pred             -hhHhhHHhHHHHHHHHHHHHhhhCC
Q 020053          162 -SLDYKKEERRALAIKSREAAPKFGT  186 (332)
Q Consensus       162 -a~~~~~~dr~~y~~kare~~~kya~  186 (332)
                       ++.++++|+++|.+++|+|+++||.
T Consensus       138 ~aa~~~~~d~~~y~~~~r~~~~~ya~  163 (163)
T 3rcz_B          138 EAYTMFKKDKVEYEKRVRAQARENAP  163 (163)
T ss_dssp             HHHHHHHHCHHHHHHHHHHHHHHTCC
T ss_pred             HHHHHHHHCHHHHHHHHHHHHHHhCc
Confidence             5677889999999999999999974

>1fxt_A Ubiquitin-conjugating enzyme E2-24 kDa; ligase; NMR {Saccharomyces cerevisiae} SCOP: d.20.1.1 PDB: 1fzy_A

Probab=100.00  E-value=1e-39  Score=282.36  Aligned_cols=143  Identities=27%  Similarity=0.534  Sum_probs=132.6

Q ss_pred             HHHHHHHHHHHHhhCCCCCeEEecCCC-CceEEEEEEeCCCCCCCCCCEEEEEEEcCCCCCCCCCccccccccccccccc
Q 020053           12 AVKRILQEVKEMQSNPSDDFMSLPLEE-NIFEWQFAIRGPGDTEFEGGIYHGRIQLPAEYPFKPPSFMLLTVRCCSLMEH   90 (332)
Q Consensus        12 a~kRL~kEl~~l~~~p~~gi~v~p~ed-nl~~W~v~I~GP~dTpYeGGiF~l~I~fP~~YP~~PP~V~FlT~~~~~~i~H   90 (332)
                      +.+||++|+++|+++++.|+++.+.++ |+++|+++|.||++|||+||+|+++|.||++||++||+|+|.|     +|||
T Consensus         2 ~~~RL~~El~~l~~~~~~~i~~~~~~~~~l~~w~~~I~Gp~~tpyegg~f~~~i~fp~~YP~~PP~v~f~t-----~i~H   76 (149)
T 1fxt_A            2 RAKRIMKEIQAVKDDPAAHITLEFVSESDIHHLKGTFLGPPGTPYEGGKFVVDIEVPMEYPFKPPKMQFDT-----KVYH   76 (149)
T ss_dssp             CHHHHHHHHHHHHHCGGGCCEEEESSSSCSSEEEEEEECCSSSTTCSSEEEEEEECCTTTTSSCCEEEESS-----CCCB
T ss_pred             hHHHHHHHHHHHHhCCCCCEEEEECCCCCceEEEEEEECCCCCCcCCcEEEEEEECCCCCCCCCCEEEEeC-----CCcc
Confidence            579999999999999999999999887 9999999999999999999999999999999999999999999     8888


Q ss_pred             cccccccCCceeecccccCCCCCCccccC-CCeEEeecCCCCCCCCCCCCCHHHHHHHHHHhCCC-CCCChhh--hhHhh
Q 020053           91 KSYCLCADYGVRTNVCAFFPPQPNGRFET-QTKICLSISNHHPEHWQPSWSVRTALVALIAFMPT-NPNGALG--SLDYK  166 (332)
Q Consensus        91 p~~~~~~~~~~~~n~~~~~h~~PNv~v~~-~G~ICL~iL~~~~e~WsP~~ti~sVL~sI~~lL~~-nP~~~~~--a~~~~  166 (332)
                                            ||  |+. +|.|||++|.   ++|+|+++|++||++|++||.+ ||+++++  ++.++
T Consensus        77 ----------------------Pn--i~~~~G~iCl~iL~---~~W~p~~~i~~vl~~i~~ll~~p~~~~p~n~~aa~~~  129 (149)
T 1fxt_A           77 ----------------------PN--ISSVTGAICLDILK---NAWSPVITLKSALISLQALLQSPEPNDPQDAEVAQHY  129 (149)
T ss_dssp             ----------------------TT--BCSSSCCBCCHHHH---TSCCTTCCHHHHHHHHHHHHHSCCSSSCSSHHHHHHH
T ss_pred             ----------------------CC--CcCCCCeEeCCcCC---CCCCCCCcHHHHHHHHHHHHhCCCCCCcccHHHHHHH
Confidence                                  99  566 8999999997   8999999999999999999964 6666655  57788


Q ss_pred             HHhHHHHHHHHHHHHhhhCC
Q 020053          167 KEERRALAIKSREAAPKFGT  186 (332)
Q Consensus       167 ~~dr~~y~~kare~~~kya~  186 (332)
                      ++|++.|.++||+|+++||+
T Consensus       130 ~~d~~~f~~~a~~~~~~~a~  149 (149)
T 1fxt_A          130 LRDRESFNKTAALWTRLYAS  149 (149)
T ss_dssp             HHCSSHHHHHHHHHHHHHCC
T ss_pred             HHCHHHHHHHHHHHHHHhcC
Confidence            89999999999999999984

>2grr_A Ubiquitin-conjugating enzyme E2 I; ubiquitin, conjugation, small ubiquitin like modifer, SMT3, ligase; 1.30A {Homo sapiens} PDB: 2grq_A 2grn_A 2pe6_A 2gro_A 2grp_A 1u9a_A 1u9b_A 2vrr_A 2px9_B 1z5s_A 2xwu_A 3uin_A 3uio_A 3uip_A* 1kps_A 2o25_C 1a3s_A 3a4s_A 2uyz_A

Probab=100.00  E-value=5e-39  Score=281.74  Aligned_cols=150  Identities=25%  Similarity=0.499  Sum_probs=135.7

Q ss_pred             CCChHHHHHHHHHHHHHhhCCCCCeEEecCC-----CCceEEEEEEeCCCCCCCCCCEEEEEEEcCCCCCCCCCcccccc
Q 020053            7 NLKNPAVKRILQEVKEMQSNPSDDFMSLPLE-----ENIFEWQFAIRGPGDTEFEGGIYHGRIQLPAEYPFKPPSFMLLT   81 (332)
Q Consensus         7 ~m~~~a~kRL~kEl~~l~~~p~~gi~v~p~e-----dnl~~W~v~I~GP~dTpYeGGiF~l~I~fP~~YP~~PP~V~FlT   81 (332)
                      +|++.+.+||++|+++|+++++.||.+.|.+     +|+++|+++|.||++|||+||+|+++|.||++||++||+|+|.|
T Consensus         3 ~M~~~a~~RL~kE~~~l~~~~~~g~~~~p~~~~~~~~nl~~w~~~i~Gp~~tpyegg~f~~~i~fp~~YP~~PP~v~f~t   82 (161)
T 2grr_A            3 HMSGIALSRLAQERKAWRKDHPFGFVAVPTKNPDGTMNLMNWECAIPGKKGTPWEGGLFKLRMLFKDDYPSSPPKCKFEP   82 (161)
T ss_dssp             -CCHHHHHHHHHHHHHHHHSCCTTCEEEEEECTTSCEEEEEEEEEEECCTTSTTTTCEEEEEEECCTTTTSSCCEEEESS
T ss_pred             cccHHHHHHHHHHHHHHHhCCCCCEEEEeccccCCCCCccEEEEEEECCCCCCccCCEEEEEEEcCcccCCCCCEEEEec
Confidence            5888999999999999999999999998863     68999999999999999999999999999999999999999999


Q ss_pred             ccccccccccccccccCCceeecccccCCCCCCccccCCCeEEeecCCCCCCCCCCCCCHHHHHHHHHHhCCC-CCCChh
Q 020053           82 VRCCSLMEHKSYCLCADYGVRTNVCAFFPPQPNGRFETQTKICLSISNHHPEHWQPSWSVRTALVALIAFMPT-NPNGAL  160 (332)
Q Consensus        82 ~~~~~~i~Hp~~~~~~~~~~~~n~~~~~h~~PNv~v~~~G~ICL~iL~~~~e~WsP~~ti~sVL~sI~~lL~~-nP~~~~  160 (332)
                           +|||                      ||  |+.+|.|||++|+. .++|+|+++|++||++|++||.+ ++++++
T Consensus        83 -----~i~H----------------------Pn--v~~~G~iCl~iL~~-~~~W~p~~~i~~vl~~i~~ll~~p~~~~p~  132 (161)
T 2grr_A           83 -----PLFH----------------------PN--VYPSGTVCLSILEE-DKDWRPAITIKQILLGIQELLNEPNIQSPA  132 (161)
T ss_dssp             -----CCCS----------------------TT--BCTTSBBCCGGGCT-TTTCCTTCCHHHHHHHHHHHHHSCCTTSCS
T ss_pred             -----Cccc----------------------CC--CCCCCeEeehhcCC-CCCcCCCCcHHHHHHHHHHHHhCCCCCCcc
Confidence                 8888                      99  57899999999972 24899999999999999999964 555555


Q ss_pred             h--hhHhhHHhHHHHHHHHHHHHhhhCC
Q 020053          161 G--SLDYKKEERRALAIKSREAAPKFGT  186 (332)
Q Consensus       161 ~--a~~~~~~dr~~y~~kare~~~kya~  186 (332)
                      +  ++.++++|+++|.+++|+|+++|+.
T Consensus       133 n~~aa~~~~~~~~~y~~~~~~~~~~~a~  160 (161)
T 2grr_A          133 QAEAYTIYCQNRVEYEKRVRAQAKKFAP  160 (161)
T ss_dssp             CHHHHHHHHHCHHHHHHHHHHHHHHTCC
T ss_pred             CHHHHHHHHHCHHHHHHHHHHHHHHHhc
Confidence            4  5777889999999999999999985

>3k9o_A Ubiquitin-conjugating enzyme E2 K; E2-25K, complex structure, ATP-binding, isopeptide BO ligase, nucleotide-binding, UBL conjugation pathway; 1.80A {Homo sapiens} PDB: 3k9p_A 1yla_A 2o25_A

Probab=100.00  E-value=6e-39  Score=290.33  Aligned_cols=148  Identities=30%  Similarity=0.540  Sum_probs=135.8

Q ss_pred             CChHHHHHHHHHHHHHhhC---CCCCeEEecCCCCceEEEEEEeCCCCCCCCCCEEEEEEEcCCCCCCCCCccccccccc
Q 020053            8 LKNPAVKRILQEVKEMQSN---PSDDFMSLPLEENIFEWQFAIRGPGDTEFEGGIYHGRIQLPAEYPFKPPSFMLLTVRC   84 (332)
Q Consensus         8 m~~~a~kRL~kEl~~l~~~---p~~gi~v~p~ednl~~W~v~I~GP~dTpYeGGiF~l~I~fP~~YP~~PP~V~FlT~~~   84 (332)
                      |++.|.+||++||++|+++   ++.|+++.|.++|+++|+++|.||++|||+||+|+++|.||++||++||+|+|.|   
T Consensus         2 Ms~~a~~Rl~kEl~~l~~~~~~~~~~i~~~~~~~nl~~w~~~i~Gp~~tpyegg~f~~~i~fp~~YP~~pP~v~f~t---   78 (201)
T 3k9o_A            2 MANIAVQRIKREFKEVLKSEETSKNQIKVDLVDENFTELRGEIAGPPDTPYEGGRYQLEIKIPETYPFNPPKVRFIT---   78 (201)
T ss_dssp             --CTTHHHHHHHHHHHHTCHHHHTTSEEEEECSTTSSEEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCCEEEESS---
T ss_pred             CcHHHHHHHHHHHHHHHhCCCCCCCCEEEEECCCCccEEEEEEECCCCCCCCCCEEEEEEECCCcCCCCCCcccccc---
Confidence            7778999999999999987   3679999999999999999999999999999999999999999999999999999   


Q ss_pred             cccccccccccccCCceeecccccCCCCCCcccc-CCCeEEeecCCCCCCCCCCCCCHHHHHHHHHHhCCC-CCCChhh-
Q 020053           85 CSLMEHKSYCLCADYGVRTNVCAFFPPQPNGRFE-TQTKICLSISNHHPEHWQPSWSVRTALVALIAFMPT-NPNGALG-  161 (332)
Q Consensus        85 ~~~i~Hp~~~~~~~~~~~~n~~~~~h~~PNv~v~-~~G~ICL~iL~~~~e~WsP~~ti~sVL~sI~~lL~~-nP~~~~~-  161 (332)
                        +|||                      ||  |+ .+|.|||++|.   ++|+|+++|++||++|++||.+ ||+++++ 
T Consensus        79 --~i~H----------------------Pn--v~~~~G~iCl~iL~---~~W~p~~~i~~vL~~i~~ll~~p~p~~p~n~  129 (201)
T 3k9o_A           79 --KIWH----------------------PN--ISSVTGAICLDILK---DQWAAAMTLRTVLLSLQALLAAAEPDDPQDA  129 (201)
T ss_dssp             --CCCB----------------------TT--BCTTTCBBCCGGGT---TTCCTTCCHHHHHHHHHHHHHSCCTTSCSCH
T ss_pred             --Cccc----------------------CC--CcCCCCeeeCcccc---cCCCCCCCHHHHHHHHHHHhcCCCCCCcccH
Confidence              8888                      99  56 58999999997   8999999999999999999965 7777765 


Q ss_pred             -hhHhhHHhHHHHHHHHHHHHhhhCCh
Q 020053          162 -SLDYKKEERRALAIKSREAAPKFGTP  187 (332)
Q Consensus       162 -a~~~~~~dr~~y~~kare~~~kya~~  187 (332)
                       ++.+|++|++.|.++||+|+++|+..
T Consensus       130 ~aa~~~~~~~~~f~~~a~~~~~~~a~~  156 (201)
T 3k9o_A          130 VVANQYKQNPEMFKQTARLWAHVYAGA  156 (201)
T ss_dssp             HHHHHHHHCHHHHHHHHHHHHHHHHCC
T ss_pred             HHHHHHHHCHHHHHHHHHHHHHHhccc
Confidence             57888899999999999999999975

>3bzh_A Ubiquitin-conjugating enzyme E2 E1; structural genomics consortium, ubiquitin-conjuga enzyme, ligase, SGC, UBL conjugation pathway; 1.60A {Homo sapiens} PDB: 1y6l_A

Probab=100.00  E-value=1.4e-38  Score=287.63  Aligned_cols=145  Identities=28%  Similarity=0.578  Sum_probs=135.9

Q ss_pred             hHHHHHHHHHHHHHhhCCCCCeEEecCCCCceEEEEEEeCCCCCCCCCCEEEEEEEcCCCCCCCCCcccccccccccccc
Q 020053           10 NPAVKRILQEVKEMQSNPSDDFMSLPLEENIFEWQFAIRGPGDTEFEGGIYHGRIQLPAEYPFKPPSFMLLTVRCCSLME   89 (332)
Q Consensus        10 ~~a~kRL~kEl~~l~~~p~~gi~v~p~ednl~~W~v~I~GP~dTpYeGGiF~l~I~fP~~YP~~PP~V~FlT~~~~~~i~   89 (332)
                      +.+.+||++||++|+++++.||.+.|.++|+++|+++|.||++|||+||+|+|+|.||++||++||+|+|+|     +||
T Consensus        47 s~a~~RL~kEl~~l~~~~~~gi~~~p~~~nl~~W~~~I~GP~~TpYegG~f~l~i~fp~~YP~~PP~V~F~T-----~i~  121 (194)
T 3bzh_A           47 STSAKRIQKELADITLDPPPNCSAGPKGDNIYEWRSTILGPPGSVYEGGVFFLDITFTPEYPFKPPKVTFRT-----RIY  121 (194)
T ss_dssp             HHHHHHHHHHHHHHHHSCCTTEEEEESSSCTTEEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCCEEEESS-----CCC
T ss_pred             cHHHHHHHHHHHHHHhCCCCCceeecccCccccceEEEeCCCCCCccCCEEEEEEECCCcCCCCCccccccC-----CCc
Confidence            568999999999999999999999999999999999999999999999999999999999999999999999     888


Q ss_pred             ccccccccCCceeecccccCCCCCCccccCCCeEEeecCCCCCCCCCCCCCHHHHHHHHHHhCCC-CCCChhh--hhHhh
Q 020053           90 HKSYCLCADYGVRTNVCAFFPPQPNGRFETQTKICLSISNHHPEHWQPSWSVRTALVALIAFMPT-NPNGALG--SLDYK  166 (332)
Q Consensus        90 Hp~~~~~~~~~~~~n~~~~~h~~PNv~v~~~G~ICL~iL~~~~e~WsP~~ti~sVL~sI~~lL~~-nP~~~~~--a~~~~  166 (332)
                      |                      ||  |+.+|.|||++|.   +.|+|.++|++||++|++||.+ ||+++++  ++.++
T Consensus       122 H----------------------PN--V~~~G~ICL~iL~---~~WsP~~ti~~vL~sI~~ll~~pnp~~Pln~~aa~l~  174 (194)
T 3bzh_A          122 H----------------------CN--INSQGVICLDILK---DNWSPALTISKVLLSICSLLTDCNPADPLVGSIATQY  174 (194)
T ss_dssp             B----------------------TT--BCTTCBBCCGGGT---TTCCTTCCHHHHHHHHHHHHHSCCTTSCSCHHHHHHH
T ss_pred             c----------------------ce--ECCCCceechhhh---ccCCCcCcHHHHHHHHHHHHhCCCCccchhHHHHHHH
Confidence            8                      99  6789999999997   8999999999999999999965 7777665  57778


Q ss_pred             HHhHHHHHHHHHHHHhhhCC
Q 020053          167 KEERRALAIKSREAAPKFGT  186 (332)
Q Consensus       167 ~~dr~~y~~kare~~~kya~  186 (332)
                      ++|+++|.++||+|+++|++
T Consensus       175 ~~d~~~f~~~ar~~t~~ya~  194 (194)
T 3bzh_A          175 MTNRAEHDRMARQWTKRYAT  194 (194)
T ss_dssp             HHCHHHHHHHHHHHHHHHCC
T ss_pred             HHCHHHHHHHHHHHHHHhhC
Confidence            89999999999999999984

>2pwq_A Ubiquitin conjugating enzyme; structural genomics consortium, SGC, ligase; 1.90A {Plasmodium yoelii}

Probab=100.00  E-value=4.9e-39  Score=295.04  Aligned_cols=153  Identities=26%  Similarity=0.553  Sum_probs=139.2

Q ss_pred             CCCChHHHHHHHHHHHHHhhCCCCCeEEecCCCCceEEEEEEeCCCCCCCCCCEEEEEEEcCCCCCCCCCcccccccccc
Q 020053            6 YNLKNPAVKRILQEVKEMQSNPSDDFMSLPLEENIFEWQFAIRGPGDTEFEGGIYHGRIQLPAEYPFKPPSFMLLTVRCC   85 (332)
Q Consensus         6 ~~m~~~a~kRL~kEl~~l~~~p~~gi~v~p~ednl~~W~v~I~GP~dTpYeGGiF~l~I~fP~~YP~~PP~V~FlT~~~~   85 (332)
                      ..+.+.+.+||++||++|+++++.||++.|.++|+++|+++|.||++|||+||+|+|+|.||++||++||+|+|.|    
T Consensus        18 ~~~~s~a~~RL~kEl~~l~~~~~~gi~~~p~~~nl~~W~~~I~GP~~TpYegG~f~l~i~fP~~YP~~PP~V~F~T----   93 (216)
T 2pwq_A           18 YFQGSKELLRLQKELKDIENENVQEIDAHIKDSNFFEWVGFIKGPEGTPYEGGHFTLAITIPNDYPYNPPKIKFVT----   93 (216)
T ss_dssp             -CCSCHHHHHHHHHHHHHHHSCTTTEEEEECSSCTTEEEEEEECCTTSTTTTCEEEEEEECCTTTTSSCCEEEESS----
T ss_pred             ccccCHHHHHHHHHHHHHHhCCCCCEEEEEcCCccceeEEEEeCCCCCCccceEEEEEEECCCcCCCCCCcccccC----
Confidence            3456789999999999999999999999999999999999999999999999999999999999999999999999    


Q ss_pred             ccccccccccccCCceeecccccCCCCCCcccc-CCCeEEeecCCCCCCCCCCCCCHHHHHHHHHHhCCC-CCCChhh--
Q 020053           86 SLMEHKSYCLCADYGVRTNVCAFFPPQPNGRFE-TQTKICLSISNHHPEHWQPSWSVRTALVALIAFMPT-NPNGALG--  161 (332)
Q Consensus        86 ~~i~Hp~~~~~~~~~~~~n~~~~~h~~PNv~v~-~~G~ICL~iL~~~~e~WsP~~ti~sVL~sI~~lL~~-nP~~~~~--  161 (332)
                       +|||                      ||  |+ .+|.|||++|+   +.|+|+++|++||++|++||.+ ||+++++  
T Consensus        94 -~i~H----------------------PN--I~~~~G~ICL~iL~---~~WsP~~ti~~VL~sI~sLL~~Pnp~dPln~e  145 (216)
T 2pwq_A           94 -KIWH----------------------PN--ISSQTGAICLDVLK---NEWSPALTIRTALLSIQALLSDPQPDDPQDAE  145 (216)
T ss_dssp             -CCCB----------------------TT--BCTTTCBBCCHHHH---HHCCTTCCHHHHHHHHHHHHHSCCTTSCSCHH
T ss_pred             -CCcC----------------------CC--CcCCCCEEEchhhc---ccCCCCCcHHHHHHHHHHHHhCCCCCCcccHH
Confidence             8888                      99  55 58999999997   8899999999999999999965 6777765  


Q ss_pred             hhHhhHHhHHHHHHHHHHHHhhhCChhHH
Q 020053          162 SLDYKKEERRALAIKSREAAPKFGTPERQ  190 (332)
Q Consensus       162 a~~~~~~dr~~y~~kare~~~kya~~~~~  190 (332)
                      ++.+|++|++.|.++||+|+++|+.....
T Consensus       146 aa~~~~~d~~~f~~~ar~~t~~ya~~~~~  174 (216)
T 2pwq_A          146 VAKMYKENHALFVKTASVWTKTFATGPKE  174 (216)
T ss_dssp             HHHHHHHCHHHHHHHHHHHHHHHSCCC--
T ss_pred             HHHHHHHCHHHHHHHHHHHHHHhcCCCcc
Confidence            57778899999999999999999987654

>3e46_A Ubiquitin-conjugating enzyme E2-25 kDa; huntington interacting, ligase, alternative splicing, cytoplasm, UBL conjugation, UBL conjugation pathway; 1.86A {Homo sapiens} SCOP: a.5.2.1 d.20.1.1 PDB: 3f92_A*

Probab=100.00  E-value=3.9e-38  Score=295.22  Aligned_cols=152  Identities=30%  Similarity=0.544  Sum_probs=139.9

Q ss_pred             ccCCCChHHHHHHHHHHHHHhhC---CCCCeEEecCCCCceEEEEEEeCCCCCCCCCCEEEEEEEcCCCCCCCCCccccc
Q 020053            4 DRYNLKNPAVKRILQEVKEMQSN---PSDDFMSLPLEENIFEWQFAIRGPGDTEFEGGIYHGRIQLPAEYPFKPPSFMLL   80 (332)
Q Consensus         4 ~~~~m~~~a~kRL~kEl~~l~~~---p~~gi~v~p~ednl~~W~v~I~GP~dTpYeGGiF~l~I~fP~~YP~~PP~V~Fl   80 (332)
                      .+.+|++.+.+||++||++|+++   ++.||++.|.++|+++|+++|.||++|||+||+|+|+|.||++||++||+|+|.
T Consensus        50 s~~~Ms~~a~~RL~kEl~~l~~~~~~~~~gi~v~p~~dnl~~W~~~I~GP~~TpYegG~f~l~i~fp~~YP~~PP~V~F~  129 (253)
T 3e46_A           50 SEFDMANIAVQRIKREFKEVLKSEETSKNQIKVDLVDENFTELRGEIAGPPDTPYEGGRYQLEIKIPETYPFNPPKVRFI  129 (253)
T ss_dssp             --CCCCHHHHHHHHHHHHHHHHCHHHHTTSEEEEECSTTSSEEEEEEECCTTSTTTTCEEEEEEECCTTTTSSCCEEEES
T ss_pred             ccccccHHHHHHHHHHHHHHHhCCCCCCCCEEEEECCCcccEEEEEEECCCCCCcCCCEEEEEEECCCCCCCCCCeeeec
Confidence            35789999999999999999987   467999999999999999999999999999999999999999999999999999


Q ss_pred             cccccccccccccccccCCceeecccccCCCCCCcccc-CCCeEEeecCCCCCCCCCCCCCHHHHHHHHHHhCCC-CCCC
Q 020053           81 TVRCCSLMEHKSYCLCADYGVRTNVCAFFPPQPNGRFE-TQTKICLSISNHHPEHWQPSWSVRTALVALIAFMPT-NPNG  158 (332)
Q Consensus        81 T~~~~~~i~Hp~~~~~~~~~~~~n~~~~~h~~PNv~v~-~~G~ICL~iL~~~~e~WsP~~ti~sVL~sI~~lL~~-nP~~  158 (332)
                      |     +|||                      ||  |+ .+|.|||++|.   ++|+|+++|++||++|++||.+ ||++
T Consensus       130 T-----~i~H----------------------PN--V~~~~G~ICL~iL~---~~WsP~~ti~~vL~sI~~ll~~pnp~~  177 (253)
T 3e46_A          130 T-----KIWH----------------------PN--ISSVTGAICLDILK---DQWAAAMTLRTVLLSLQALLAAAEPDD  177 (253)
T ss_dssp             S-----CCCB----------------------TT--BCTTTCBBCCGGGT---TCCCTTCCHHHHHHHHHHHHHSCCTTS
T ss_pred             C-----CCcc----------------------CC--ccCCCCeeeccccc---CCCCCCCCHHHHHHHHHHHhcCCCCCC
Confidence            9     8888                      99  56 58999999997   8999999999999999999965 7777


Q ss_pred             hhh--hhHhhHHhHHHHHHHHHHHHhhhCCh
Q 020053          159 ALG--SLDYKKEERRALAIKSREAAPKFGTP  187 (332)
Q Consensus       159 ~~~--a~~~~~~dr~~y~~kare~~~kya~~  187 (332)
                      +++  ++.+|++|++.|.++||+|+++|+..
T Consensus       178 Pln~eaa~l~~~d~~~f~~~ar~~t~~yA~~  208 (253)
T 3e46_A          178 PQDAVVANQYKQNPEMFKQTARLWAHVYAGA  208 (253)
T ss_dssp             CSCHHHHHHHHHCHHHHHHHHHHHHHHHHCC
T ss_pred             hhhHHHHHHHHHCHHHHHHHHHHHHHHhccc
Confidence            765  57888899999999999999999975

>1i7k_A Ubiquitin-conjugating enzyme E2 H10; ligase; 1.95A {Homo sapiens} SCOP: d.20.1.1

Probab=100.00  E-value=1.2e-38  Score=284.76  Aligned_cols=149  Identities=27%  Similarity=0.476  Sum_probs=133.9

Q ss_pred             CCChHHHHHHHHHHHHHhhCCCCCeEEecCCCCceEEEEEEeCCCCCCCCCCEEEEEEEcCCCCCCCCCccccccccccc
Q 020053            7 NLKNPAVKRILQEVKEMQSNPSDDFMSLPLEENIFEWQFAIRGPGDTEFEGGIYHGRIQLPAEYPFKPPSFMLLTVRCCS   86 (332)
Q Consensus         7 ~m~~~a~kRL~kEl~~l~~~p~~gi~v~p~ednl~~W~v~I~GP~dTpYeGGiF~l~I~fP~~YP~~PP~V~FlT~~~~~   86 (332)
                      +|++.+.+||++||++|+++++.||++.|.++|+++|+++|.||++|||+||+|+|+|.||++||++||+|+|+|     
T Consensus        26 ~~~~~~~~RL~kEl~~l~~~~~~gi~~~p~~~nl~~W~~~I~GP~~TpYegG~f~l~i~fp~~YP~~PP~V~F~T-----  100 (179)
T 1i7k_A           26 AARGPVGKRLQQELMTLMMSGDKGISAFPESDNLFKWVGTIHGAAGTVYEDLRYKLSLEFPSGYPYNAPTVKFLT-----  100 (179)
T ss_dssp             ----CHHHHHHHHHHHHHHHCCTTEEEEEETTEEEEEEEEEEBCTTSTTBTCEEEEEEECCTTTTTSCCEEEESS-----
T ss_pred             ccChHHHHHHHHHHHHHHhCCCCCEEEEEcCCcccccEEEEECCCCCCcCCCEEEEEEECCCcCCCCCceEEEec-----
Confidence            377889999999999999999999999999999999999999999999999999999999999999999999999     


Q ss_pred             cccccccccccCCceeecccccCCCCCCccccCCCeEEeecCCCCCCCCCCCCCHHHHHHHHHHhCCC-CCCChhh--hh
Q 020053           87 LMEHKSYCLCADYGVRTNVCAFFPPQPNGRFETQTKICLSISNHHPEHWQPSWSVRTALVALIAFMPT-NPNGALG--SL  163 (332)
Q Consensus        87 ~i~Hp~~~~~~~~~~~~n~~~~~h~~PNv~v~~~G~ICL~iL~~~~e~WsP~~ti~sVL~sI~~lL~~-nP~~~~~--a~  163 (332)
                      +|||                      ||  |+.+|+|||++|.   +.|+|+++|++||++|++||.+ ||+++++  ++
T Consensus       101 ~i~H----------------------PN--V~~~G~ICL~iL~---~~WsP~~ti~~vL~sI~sll~~Pn~~~Pln~~aa  153 (179)
T 1i7k_A          101 PCYH----------------------PN--VDTQGNISLDILK---EKWSALYDVRTILLSIQSLLGEPNIDSPLNTHAA  153 (179)
T ss_dssp             CCCS----------------------TT--BCTTCBBCCGGGT---TTCCTTCCHHHHHHHHHHHHHSCCTTSCSCHHHH
T ss_pred             CCcc----------------------Cc--cccCCeEEcccCc---CcCCCCCCHHHHHHHHHHHHhCCCCcchhhHHHH
Confidence            8888                      99  6789999999997   8999999999999999999964 6666655  56


Q ss_pred             HhhHHhHHHHHHHHHHHHhhhCChh
Q 020053          164 DYKKEERRALAIKSREAAPKFGTPE  188 (332)
Q Consensus       164 ~~~~~dr~~y~~kare~~~kya~~~  188 (332)
                      .++ +|+++|.+++++++++++...
T Consensus       154 ~l~-~d~~~f~~~v~~~v~~~~~~~  177 (179)
T 1i7k_A          154 ELW-KNPTAFKKYLQETYSKQVTSQ  177 (179)
T ss_dssp             HHT-TSHHHHHHHHHHHHHTTCC--
T ss_pred             HHh-hCHHHHHHHHHHHHHHHhccc
Confidence            777 999999999999999988653

>3fn1_B NEDD8-conjugating enzyme UBE2F; ligase, ATP-binding, cell cycle, nucleotide-binding, UBL CON pathway; 2.50A {Homo sapiens} PDB: 2edi_A

Probab=100.00  E-value=4.7e-38  Score=276.62  Aligned_cols=151  Identities=19%  Similarity=0.371  Sum_probs=135.8

Q ss_pred             CCCChHHHHHHHHHHHHHhhCCCCCeEEecC-CCCceEEEEEEeCCCCCCCCCCEEEEEEEcCCCCCCCCCccccccccc
Q 020053            6 YNLKNPAVKRILQEVKEMQSNPSDDFMSLPL-EENIFEWQFAIRGPGDTEFEGGIYHGRIQLPAEYPFKPPSFMLLTVRC   84 (332)
Q Consensus         6 ~~m~~~a~kRL~kEl~~l~~~p~~gi~v~p~-ednl~~W~v~I~GP~dTpYeGGiF~l~I~fP~~YP~~PP~V~FlT~~~   84 (332)
                      .+..+.+.+||++||++|+++++.||++.+. ++|++.|+++| ||++|||+||+|+++|.||++||++||+|+|+|   
T Consensus         9 ~~~~s~~~~RL~kEl~~l~~~~~~gi~~~~~~~~~l~~w~~~i-gp~~tpyegg~f~~~i~fp~~YP~~pP~v~f~t---   84 (167)
T 3fn1_B            9 TRRVSVRDKLLVKEVAELEANLPCTCKVHFPDPNKLHCFQLTV-TPDEGYYQGGKFQFETEVPDAYNMVPPKVKCLT---   84 (167)
T ss_dssp             CCCCCHHHHHHHHHHHHHGGGSCTTEEEECSSSSCTTEEEEEE-CCSSSTTTTCCEEEEEECCTTBTTBCCEEEECS---
T ss_pred             ccchhHHHHHHHHHHHHHHhCCCCCEEEEeCCCCcceeEEEEE-CCCCCccCCCEEEEEEECCCCCCCCCCeeEecC---
Confidence            3455679999999999999999999999854 68999999999 899999999999999999999999999999999   


Q ss_pred             cccccccccccccCCceeecccccCCCCCCccccCCCeEEeecCCCC---CCCCCCCCCHHHHHHHHHHhCCC--CCCCh
Q 020053           85 CSLMEHKSYCLCADYGVRTNVCAFFPPQPNGRFETQTKICLSISNHH---PEHWQPSWSVRTALVALIAFMPT--NPNGA  159 (332)
Q Consensus        85 ~~~i~Hp~~~~~~~~~~~~n~~~~~h~~PNv~v~~~G~ICL~iL~~~---~e~WsP~~ti~sVL~sI~~lL~~--nP~~~  159 (332)
                        +|||                      ||  |+.+|+|||++|+.+   +++|+|+++|++||++|++||.+  ||+++
T Consensus        85 --~i~H----------------------Pn--v~~~G~iCl~iL~~~~~~~~~W~p~~~i~~vl~~i~~ll~~~pn~~~p  138 (167)
T 3fn1_B           85 --KIWH----------------------PN--ITETGEICLSLLREHSIDGTGWAPTRTLKDVVWGLNSLFTDLLNFDDP  138 (167)
T ss_dssp             --CCCC----------------------SS--BCTTCCBCCGGGSBCSSSTTSBCTTCCHHHHHHHHHHTTTTTCCSSSC
T ss_pred             --Cccc----------------------CC--CCCCCEEechhhccCCCCCCCCCCcCcHHHHHHHHHHHHcCCCCCCcc
Confidence              8888                      99  678999999999843   35899999999999999999976  56666


Q ss_pred             hh--hhHhhHHhHHHHHHHHHHHHhhhCC
Q 020053          160 LG--SLDYKKEERRALAIKSREAAPKFGT  186 (332)
Q Consensus       160 ~~--a~~~~~~dr~~y~~kare~~~kya~  186 (332)
                      ++  ++.++++|++.|.++||+|+++||.
T Consensus       139 ~n~eaa~~~~~~~~~f~~~~r~~~~~~A~  167 (167)
T 3fn1_B          139 LNIEAAEHHLRDKEDFRNKVDDYIKRYAR  167 (167)
T ss_dssp             SCHHHHHHHHHCHHHHHHHHHHHHHHHCC
T ss_pred             hhHHHHHHHHHCHHHHHHHHHHHHHHhcC
Confidence            55  5778889999999999999999984

>1wzv_A Ubiquitin-conjugating enzyme E2 L6; ligase; 2.10A {Homo sapiens} SCOP: d.20.1.1 PDB: 1wzw_A 2kjh_A

Probab=100.00  E-value=2.7e-38  Score=275.06  Aligned_cols=146  Identities=26%  Similarity=0.492  Sum_probs=133.3

Q ss_pred             HHHHHHHHHHHHHhhCCCCCeEE-ecCCCCceEEEEEEeCCCCCCCCCCEEEEEEEcCCCCCCCCCcccccccccccccc
Q 020053           11 PAVKRILQEVKEMQSNPSDDFMS-LPLEENIFEWQFAIRGPGDTEFEGGIYHGRIQLPAEYPFKPPSFMLLTVRCCSLME   89 (332)
Q Consensus        11 ~a~kRL~kEl~~l~~~p~~gi~v-~p~ednl~~W~v~I~GP~dTpYeGGiF~l~I~fP~~YP~~PP~V~FlT~~~~~~i~   89 (332)
                      .+.+||++|+++|+++++.||.+ .+.++|+++|+++|. |++|||+||+|+++|.||++||++||+|+|.|     +||
T Consensus         4 ~~~~RL~kEl~~l~~~~~~~i~~~~~~~~~l~~w~~~I~-P~~tpyegg~f~~~i~fp~~YP~~PP~v~f~t-----~i~   77 (155)
T 1wzv_A            4 MASMRVVKELEDLQKKPPPYLRNLSSDDANVLVWHALLL-PDQPPYHLKAFNLRISFPPEYPFKPPMIKFTT-----KIY   77 (155)
T ss_dssp             -CHHHHHHHHHHHHHSCCTTEEEEEECSSCTTEEEEEEC-CCSTTGGGEEEEEEEECCTTTTSSCCEEEESS-----CCC
T ss_pred             hHHHHHHHHHHHHHhCCCCCEEEEecCCCchheEEEEEc-CCCCCCCCCEEEEEEECCCCCCCCCCcceeeC-----CCc
Confidence            47899999999999999999999 888999999999999 99999999999999999999999999999999     888


Q ss_pred             ccccccccCCceeecccccCCCCCCccccCCCeEEeecCCCCCCCCCCCCCHHHHHHHHHHhCCC-CCCChhh--hhHhh
Q 020053           90 HKSYCLCADYGVRTNVCAFFPPQPNGRFETQTKICLSISNHHPEHWQPSWSVRTALVALIAFMPT-NPNGALG--SLDYK  166 (332)
Q Consensus        90 Hp~~~~~~~~~~~~n~~~~~h~~PNv~v~~~G~ICL~iL~~~~e~WsP~~ti~sVL~sI~~lL~~-nP~~~~~--a~~~~  166 (332)
                      |                      ||  |+.+|.|||++|+  .++|+|+++|++||++|++||.+ ||+++++  ++.++
T Consensus        78 H----------------------Pn--V~~~G~iCl~iL~--~~~W~p~~~i~~vl~~i~~ll~~p~~~~p~n~~aa~~~  131 (155)
T 1wzv_A           78 H----------------------PN--VDENGQICLPIIS--SENWKPCTKTCQVLEALNVLVNRPNIREPLRMDLADLL  131 (155)
T ss_dssp             B----------------------TT--BCTTCBCCCGGGC--TTTCCTTCCHHHHHHHHHHHHHSCCSSSCSSHHHHHHH
T ss_pred             c----------------------Cc--CCCCCeEeecCCC--ccCCCCCCcHHHHHHHHHHHHhCCCCCchHHHHHHHHH
Confidence            8                      99  6789999999993  28999999999999999999964 6666655  56778


Q ss_pred             HHhHHHHHHHHHHHHhhhCChh
Q 020053          167 KEERRALAIKSREAAPKFGTPE  188 (332)
Q Consensus       167 ~~dr~~y~~kare~~~kya~~~  188 (332)
                      ++|++.|.++||+|+++|+...
T Consensus       132 ~~~~~~y~~~~r~~~~~~a~~~  153 (155)
T 1wzv_A          132 TQNPELFRKNAEEFTLRFGVDR  153 (155)
T ss_dssp             HHCHHHHHHHHHHHHHHHCEEC
T ss_pred             HHHHHHHHHHHHHHHHHhcccC
Confidence            8999999999999999999753

>1yrv_A Ubiquitin-conjugating ligase MGC351130; structural genomics consortium, SGC, ubiquitin- conjugating enzyme; 2.18A {Homo sapiens} SCOP: d.20.1.1

Probab=100.00  E-value=2e-38  Score=280.80  Aligned_cols=149  Identities=17%  Similarity=0.410  Sum_probs=135.0

Q ss_pred             cCCCChHHHHHHHHHHHHHhhCCCCCeEEecCCCCceEEEEEEeCCCCCCCCCCEEEEEEEcCCCCCCCCCccccccccc
Q 020053            5 RYNLKNPAVKRILQEVKEMQSNPSDDFMSLPLEENIFEWQFAIRGPGDTEFEGGIYHGRIQLPAEYPFKPPSFMLLTVRC   84 (332)
Q Consensus         5 ~~~m~~~a~kRL~kEl~~l~~~p~~gi~v~p~ednl~~W~v~I~GP~dTpYeGGiF~l~I~fP~~YP~~PP~V~FlT~~~   84 (332)
                      ..+|++.+.+||++|+++|+++++.||.+.|.++|+++|+++|.||++||||||+|+|+|.||++||++||+|+|+|   
T Consensus        17 ~~~M~~~a~~RL~kEl~~l~~~~~~gi~~~p~~~nl~~W~~~I~GP~~TpYegG~f~l~i~fp~~YP~~PP~V~F~T---   93 (169)
T 1yrv_A           17 RGSMHGRAYLLLHRDFCDLKENNYKGITAKPVSEDMMEWEVEIEGLQNSVWQGLVFQLTIHFTSEYNYAPPVVKFIT---   93 (169)
T ss_dssp             TTGGGCHHHHHHHHHHHHHHHHCCTTEEEEECSTTSCEEEEEEECCTTSTTTTCEEEEEEECCTTBTTBCCEEEESS---
T ss_pred             cCccChHHHHHHHHHHHHHHhCCCCCEEEEEcCCccccceeEEECCCCCCccceEEEEEEECCccCCCCCCcceecC---
Confidence            56788899999999999999999999999999999999999999999999999999999999999999999999999   


Q ss_pred             cccccccccccccCCceeecccccCCCCCCccccCCCeEEeecCCCCCCCCCCCCCHHHHHHHHHHhCCC-CCCChhh--
Q 020053           85 CSLMEHKSYCLCADYGVRTNVCAFFPPQPNGRFETQTKICLSISNHHPEHWQPSWSVRTALVALIAFMPT-NPNGALG--  161 (332)
Q Consensus        85 ~~~i~Hp~~~~~~~~~~~~n~~~~~h~~PNv~v~~~G~ICL~iL~~~~e~WsP~~ti~sVL~sI~~lL~~-nP~~~~~--  161 (332)
                        +|||                      |||+ +.+|+|||++|+ ++++|+|+++|++||++|++||.+ ||+++++  
T Consensus        94 --~i~H----------------------PNI~-~~~G~ICL~iL~-~~~~WsP~~ti~~vL~sI~sll~~Pn~~~Pln~e  147 (169)
T 1yrv_A           94 --IPFH----------------------PNVD-PHTGQPCIDFLD-NPEKWNTNYTLSSILLALQVMLSNPVLENPVNLE  147 (169)
T ss_dssp             --CCCC----------------------TTBC-TTTCCBCCHHHH-CGGGCCTTCCHHHHHHHHHHHHTSCCTTSCSCHH
T ss_pred             --CCcc----------------------Cccc-CCCCeEeehhhc-CCcCCCCcCCHHHHHHHHHHHHhCCCCCCchhHH
Confidence              8888                      9942 789999999996 237899999999999999999965 6666655  


Q ss_pred             hhHhhHHhHHHHHHHHHHHHhh
Q 020053          162 SLDYKKEERRALAIKSREAAPK  183 (332)
Q Consensus       162 a~~~~~~dr~~y~~kare~~~k  183 (332)
                      |++++++|++.|.++ |+++++
T Consensus       148 aa~l~~~d~~~y~~~-~~~v~~  168 (169)
T 1yrv_A          148 AARILVKDESLYRTI-LRLFNR  168 (169)
T ss_dssp             HHHHHHSCHHHHHHH-HHHHC-
T ss_pred             HHHHHHHCHHHHHHH-HHHhhC
Confidence            677888999999988 887754

>1tte_A Ubiquitin-conjugating enzyme E2-24 kDa; UBC1, ubiquitin-dependent degradation, ligase; NMR {Saccharomyces cerevisiae} SCOP: a.5.2.1 d.20.1.1

Probab=100.00  E-value=7.5e-38  Score=286.97  Aligned_cols=146  Identities=27%  Similarity=0.521  Sum_probs=133.8

Q ss_pred             HHHHHHHHHHHHHhhCCCCCeEEecCCC-CceEEEEEEeCCCCCCCCCCEEEEEEEcCCCCCCCCCcccccccccccccc
Q 020053           11 PAVKRILQEVKEMQSNPSDDFMSLPLEE-NIFEWQFAIRGPGDTEFEGGIYHGRIQLPAEYPFKPPSFMLLTVRCCSLME   89 (332)
Q Consensus        11 ~a~kRL~kEl~~l~~~p~~gi~v~p~ed-nl~~W~v~I~GP~dTpYeGGiF~l~I~fP~~YP~~PP~V~FlT~~~~~~i~   89 (332)
                      .+.+||++|+++|++++++||++.|.++ ++++|+++|.||++|||+||+|+++|.||++||++||+|+|.|     +||
T Consensus         2 ~a~~RL~kEl~~l~~~~~~gi~~~p~~~~~l~~w~~~I~GP~~TpYegG~f~l~i~fP~~YP~~PP~V~F~T-----~i~   76 (215)
T 1tte_A            2 SRAKRIMKEIQAVKDDPAAHITLEFVSESDIHHLKGTFLGPPGTPYEGGKFVVDIEVPMEYPFKPPKMQFDT-----KVY   76 (215)
T ss_dssp             TTHHHHHHHHHHHHTTTCTTCEECCCSSSSCCEEEEECCEEEEETTEEECCEEEEECCSCSSSCCCEEEETT-----TCC
T ss_pred             hHHHHHHHHHHHHHhCCCCCEEEEECCCccccccEEEEeCCCCCCcCCCEEEEEEeCCccCCCCCCcccccC-----CCc
Confidence            3789999999999999999999999876 5669999999999999999999999999999999999999999     888


Q ss_pred             ccccccccCCceeecccccCCCCCCccccC-CCeEEeecCCCCCCCCCCCCCHHHHHHHHHHhCCC-CCCChhh--hhHh
Q 020053           90 HKSYCLCADYGVRTNVCAFFPPQPNGRFET-QTKICLSISNHHPEHWQPSWSVRTALVALIAFMPT-NPNGALG--SLDY  165 (332)
Q Consensus        90 Hp~~~~~~~~~~~~n~~~~~h~~PNv~v~~-~G~ICL~iL~~~~e~WsP~~ti~sVL~sI~~lL~~-nP~~~~~--a~~~  165 (332)
                      |                      ||  |+. +|.|||++|+   +.|+|+++|++||++|++||.+ ||+++++  ++.+
T Consensus        77 H----------------------PN--I~~~~G~ICL~iL~---~~WsP~~ti~~VL~sI~sLL~~Pnp~~Pln~eaa~~  129 (215)
T 1tte_A           77 H----------------------PN--ISSVTGAICLDILR---NAWSPVITLKSALISLQALLQSPEPNDPQDAEVAQH  129 (215)
T ss_dssp             C----------------------SS--SCSSSSCCCSSTTT---CCSCTTCCHHHHHHHHHHHHTSCCCSSCSCHHHHHH
T ss_pred             c----------------------Cc--CcCCCCEEECccCC---CCCCCcCcHHHHHHHHHHHHhCCCCCCccCHHHHHH
Confidence            8                      99  566 9999999998   8999999999999999999965 6776655  5677


Q ss_pred             hHHhHHHHHHHHHHHHhhhCChh
Q 020053          166 KKEERRALAIKSREAAPKFGTPE  188 (332)
Q Consensus       166 ~~~dr~~y~~kare~~~kya~~~  188 (332)
                      +++|++.|.++||+|+++|+...
T Consensus       130 ~~~d~~~f~~~ar~~t~~yA~~~  152 (215)
T 1tte_A          130 YLRDRESFNKTAALWTRLYASET  152 (215)
T ss_dssp             HHHCHHHHHHHHHHHHHHSSCCC
T ss_pred             HHHCHHHHHHHHHHHHHHhccCC
Confidence            88999999999999999999754

>3rz3_A Ubiquitin-conjugating enzyme E2 R1; ubiquitin conjugating enzyme domain, E2 domain, ligase-ligas inhibitor complex; HET: U94; 2.30A {Homo sapiens} PDB: 2ob4_A

Probab=100.00  E-value=5.2e-37  Score=274.34  Aligned_cols=147  Identities=30%  Similarity=0.585  Sum_probs=130.3

Q ss_pred             hHHHHHHHHHHHHHhhCCCCCeEEe-cCCCCceEEEEEEeCCCCCCCCCCEEEEEEEcCCCCCCCCCccccccccccccc
Q 020053           10 NPAVKRILQEVKEMQSNPSDDFMSL-PLEENIFEWQFAIRGPGDTEFEGGIYHGRIQLPAEYPFKPPSFMLLTVRCCSLM   88 (332)
Q Consensus        10 ~~a~kRL~kEl~~l~~~p~~gi~v~-p~ednl~~W~v~I~GP~dTpYeGGiF~l~I~fP~~YP~~PP~V~FlT~~~~~~i   88 (332)
                      +.+.|||++||++|+++++.||++. +.++|+++|+++|.||++|||+||+|+++|.||++||++||+|+|+|     +|
T Consensus         6 ~~a~kRL~kEl~~l~~~~~~gi~~~~~~~~nl~~W~~~I~Gp~~tpyegg~f~~~i~fp~~YP~~PP~v~f~t-----~i   80 (183)
T 3rz3_A            6 PSSQKALLLELKGLQEEPVEGFRVTLVDEGDLYNWEVAIFGPPNTYYEGGYFKARLKFPIDYPYSPPAFRFLT-----KM   80 (183)
T ss_dssp             CHHHHHHHHHHHHHHHSCCTTEEEEECTTCCTTEEEEEEECCTTSTTTTCEEEEEEECCTTTTSSCCEEEESS-----CC
T ss_pred             hHHHHHHHHHHHHHHhCCCCCEEEEecCccchhheeeeeeCCCCCCCCCCeEEEEEECCCCCCCCCCeeEecC-----CC
Confidence            5799999999999999999999998 67889999999999999999999999999999999999999999999     88


Q ss_pred             cccccccccCCceeecccccCCCCCCccccCCCeEEeecCCCC----------CCCCCCCCCHHHHHHHHHHhCCC-CCC
Q 020053           89 EHKSYCLCADYGVRTNVCAFFPPQPNGRFETQTKICLSISNHH----------PEHWQPSWSVRTALVALIAFMPT-NPN  157 (332)
Q Consensus        89 ~Hp~~~~~~~~~~~~n~~~~~h~~PNv~v~~~G~ICL~iL~~~----------~e~WsP~~ti~sVL~sI~~lL~~-nP~  157 (332)
                      ||                      ||  |+.+|+|||++|..+          .++|+|+++|++||++|++||.+ ||+
T Consensus        81 ~H----------------------Pn--V~~~G~iClsiL~~~~~~~~~~~~~~~~W~p~~~i~~vL~si~~ll~~Pn~~  136 (183)
T 3rz3_A           81 WH----------------------PN--IYETGDVCISILHPPVDDPQSGELPSERWNPTQNVRTILLSVISLLNEPNTF  136 (183)
T ss_dssp             CC----------------------TT--BCTTSBBCCTTC--------------CCCCTTCCHHHHHHHHHHHHHSCCCS
T ss_pred             cc----------------------CC--CCCCCcEehhhcCcccccccccccccCCCCCcCcHHHHHHHHHHHHhCCCCC
Confidence            88                      99  678999999999621          27899999999999999999965 666


Q ss_pred             Chhh--hhHhhHH------hHHHHHHHHHHHHhhhC
Q 020053          158 GALG--SLDYKKE------ERRALAIKSREAAPKFG  185 (332)
Q Consensus       158 ~~~~--a~~~~~~------dr~~y~~kare~~~kya  185 (332)
                      ++++  |+.++++      ++++|.+++|+++.++.
T Consensus       137 ~p~n~~aa~~~~~~~~~~~~~~~y~~~v~~~v~~s~  172 (183)
T 3rz3_A          137 SPANVDASVMYRKWKESKGKDREYTDIIRKQVLGTK  172 (183)
T ss_dssp             SCSSHHHHHHHHHHHHTTTCCCHHHHHHHHHHHHHH
T ss_pred             CcccHHHHHHHHhcccccccHHHHHHHHHHHHHHHH
Confidence            6655  5666666      67899999999998864

>2awf_A Ubiquitin-conjugating enzyme E2 G1; ligase, UBL conjugation pathway, structural genomics, structural genomics consortium SGC; 2.10A {Homo sapiens} SCOP: d.20.1.1 PDB: 1pzv_A

Probab=100.00  E-value=4.1e-37  Score=272.78  Aligned_cols=144  Identities=25%  Similarity=0.602  Sum_probs=108.9

Q ss_pred             CChHHHHHHHHHHHHHhhCCCCCeEEecCC-CCceEEEEEEeCCCCCCCCCCEEEEEEEcCCCCCCCCCccccccccccc
Q 020053            8 LKNPAVKRILQEVKEMQSNPSDDFMSLPLE-ENIFEWQFAIRGPGDTEFEGGIYHGRIQLPAEYPFKPPSFMLLTVRCCS   86 (332)
Q Consensus         8 m~~~a~kRL~kEl~~l~~~p~~gi~v~p~e-dnl~~W~v~I~GP~dTpYeGGiF~l~I~fP~~YP~~PP~V~FlT~~~~~   86 (332)
                      -++.+.+||++||++|+++++.||++.|.+ +|+++|+++|.||++||||||+|+|+|.||++||++||+|+|+|     
T Consensus        14 ~~~~~~~rL~kEl~~l~~~~~~gi~~~p~~~~nl~~W~~~I~GP~~TpYegG~f~~~i~fp~~YP~~PP~v~F~T-----   88 (172)
T 2awf_A           14 LVPRGSLLLRRQLAELNKNPVEGFSAGLIDDNDLYRWEVLIIGPPDTLYEGGVFKAHLTFPKDYPLRPPKMKFIT-----   88 (172)
T ss_dssp             CCCTTHHHHHHHHHHHHHSCCTTEEEEESSTTCTTEEEEEEECCTTSTTTTCEEEEEEECCTTTTSSCCEEEECS-----
T ss_pred             ChHHHHHHHHHHHHHHHhCCCCCEEEEECCCccccccEEEEeCCCCCCcCCcEEEEEEECCcccCCCCCcccccC-----
Confidence            356689999999999999999999999875 79999999999999999999999999999999999999999999     


Q ss_pred             cccccccccccCCceeecccccCCCCCCccccCCCeEEeecCCC----------CCCCCCCCCCHHHHHHHHHHhCCC-C
Q 020053           87 LMEHKSYCLCADYGVRTNVCAFFPPQPNGRFETQTKICLSISNH----------HPEHWQPSWSVRTALVALIAFMPT-N  155 (332)
Q Consensus        87 ~i~Hp~~~~~~~~~~~~n~~~~~h~~PNv~v~~~G~ICL~iL~~----------~~e~WsP~~ti~sVL~sI~~lL~~-n  155 (332)
                      +|||                      ||  |+.+|+|||++|+.          +.+.|+|+++|++||++|++||.+ |
T Consensus        89 ~i~H----------------------PN--V~~~G~IClsiL~~~~~d~~~~~~~~~~WsP~~ti~~vL~sI~sll~~Pn  144 (172)
T 2awf_A           89 EIWH----------------------PN--VDKNGDVCISILHEPGEDKYGYEKPEERWLPIHTVETIMISVISMLADPN  144 (172)
T ss_dssp             CCCC----------------------TT--BCTTCBBCCGGGSCC---------CTTSCCTTCCHHHHHHHHHHHHSCC-
T ss_pred             CCcc----------------------CC--CCCCCcEehhhcCCcccccccccccCCCCCCcCcHHHHHHHHHHHHHCcC
Confidence            8888                      99  67899999999973          136899999999999999999964 5


Q ss_pred             CCChhh--hhHhhHHhHH-HHHHHHHHH
Q 020053          156 PNGALG--SLDYKKEERR-ALAIKSREA  180 (332)
Q Consensus       156 P~~~~~--a~~~~~~dr~-~y~~kare~  180 (332)
                      |+++++  |+.++++|++ +|.++||++
T Consensus       145 ~~~p~n~~aa~~~~~d~~~~f~~~vr~~  172 (172)
T 2awf_A          145 GDSPANVDAAKEWREDRNGEFKRKVARC  172 (172)
T ss_dssp             ----------------------------
T ss_pred             CCCccCHHHHHHHHHCcHHHHHHHHHhC
Confidence            566655  6778889999 999999874

>2onu_A Ubiquitin-conjugating enzyme, putative; UBC, plasmodium FAL structural genomics consortium, SGC, ligase; HET: PG4; 2.38A {Plasmodium falciparum}

Probab=100.00  E-value=1e-37  Score=271.53  Aligned_cols=144  Identities=21%  Similarity=0.470  Sum_probs=129.3

Q ss_pred             HHHHHHHHHHHHHhhCCCCCeEEecCCCCceEEEEEEeCCCCCCCCCCEEEEEEEcCCCCCCCCCccccccccccccccc
Q 020053           11 PAVKRILQEVKEMQSNPSDDFMSLPLEENIFEWQFAIRGPGDTEFEGGIYHGRIQLPAEYPFKPPSFMLLTVRCCSLMEH   90 (332)
Q Consensus        11 ~a~kRL~kEl~~l~~~p~~gi~v~p~ednl~~W~v~I~GP~dTpYeGGiF~l~I~fP~~YP~~PP~V~FlT~~~~~~i~H   90 (332)
                      .+.+||++|+++|+++   |+.+.+.++|+++|+++|.||++|||+||+|+++|.||++||++||+|+|+|     +|||
T Consensus         2 sa~~Rl~kEl~~l~~~---~~~v~~~~~~l~~w~~~i~Gp~~tpyegg~f~~~i~fp~~YP~~pP~v~f~t-----~i~H   73 (152)
T 2onu_A            2 TSLTRKQCDFTKLIMA---GYDLELNNGSTQDFDVMFHGPNGTAYEGGIWKVHVTLPDDYPFASPSIGFMN-----KLLH   73 (152)
T ss_dssp             -CCCHHHHTHHHHHHH---TCCEEEETTEEEEEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCCEEEESS-----CCCC
T ss_pred             hHHHHHHHHHHhcCcC---CCEEEEccCccceEEEEEECCCCCcccceEEEEEEcCcccCCCCCCeEEEec-----CCcc
Confidence            3568999999999874   7888899999999999999999999999999999999999999999999999     8888


Q ss_pred             cccccccCCceeecccccCCCCCCcccc-CCCeEEeecCCCCCCCCCCCCCHHHHHHH-HHHhCCC-CCCChhh--hhHh
Q 020053           91 KSYCLCADYGVRTNVCAFFPPQPNGRFE-TQTKICLSISNHHPEHWQPSWSVRTALVA-LIAFMPT-NPNGALG--SLDY  165 (332)
Q Consensus        91 p~~~~~~~~~~~~n~~~~~h~~PNv~v~-~~G~ICL~iL~~~~e~WsP~~ti~sVL~s-I~~lL~~-nP~~~~~--a~~~  165 (332)
                                            ||  |+ .+|.|||++|+   ++|+|+++|++||++ |++||.+ ||+++++  ++.+
T Consensus        74 ----------------------Pn--i~~~~G~iCl~il~---~~W~p~~~i~~vl~~ii~~Ll~~Pn~~~P~n~~aa~~  126 (152)
T 2onu_A           74 ----------------------PN--VDEASGSVCLDVIN---QTWTPLYSLVNVFEVFLPQLLTYPNPSDPLNSDAASL  126 (152)
T ss_dssp             ----------------------TT--BCTTTCBBCHHHHH---HHCCTTCCHHHHHHTHHHHHHHSCCCSSCSSHHHHHH
T ss_pred             ----------------------Cc--CcCcCCeEeccccc---ccCCCCCCHHHHHHHHHHHHHhCCCCCCcccHHHHHH
Confidence                                  99  56 58999999997   889999999999999 5788854 6666655  6777


Q ss_pred             hHHhHHHHHHHHHHHHhhhCChhH
Q 020053          166 KKEERRALAIKSREAAPKFGTPER  189 (332)
Q Consensus       166 ~~~dr~~y~~kare~~~kya~~~~  189 (332)
                      +++|++.|.+++|+|+++||..+.
T Consensus       127 ~~~d~~~y~~~v~~~~~~~a~~~~  150 (152)
T 2onu_A          127 LMKDKNIYEEKVKEYVKLYASKDL  150 (152)
T ss_dssp             HHHCHHHHHHHHHHHHHHHSCGGG
T ss_pred             HHHCHHHHHHHHHHHHHHhccCcc
Confidence            889999999999999999998764

>2y9m_A Ubiquitin-conjugating enzyme E2-21 kDa; ligase-transport protein complex, ubiquitin conjugating ENZY complex, peroxisomal protein; 2.60A {Saccharomyces cerevisiae} PDB: 2y9p_A 2y9o_A

Probab=100.00  E-value=1.5e-36  Score=268.98  Aligned_cols=151  Identities=22%  Similarity=0.381  Sum_probs=131.0

Q ss_pred             CCChHHHHHHHHHHHHHhh-C-C------CC---CeEEec-CCCCceEEEEEEeCCCCCCCCCCEEEEEEEcCCCCCCCC
Q 020053            7 NLKNPAVKRILQEVKEMQS-N-P------SD---DFMSLP-LEENIFEWQFAIRGPGDTEFEGGIYHGRIQLPAEYPFKP   74 (332)
Q Consensus         7 ~m~~~a~kRL~kEl~~l~~-~-p------~~---gi~v~p-~ednl~~W~v~I~GP~dTpYeGGiF~l~I~fP~~YP~~P   74 (332)
                      .|++.+.+||++||++|++ + +      +.   ++.+.| .++|+++|+++|.||++|||+||+|+|+|.||++||++|
T Consensus         2 ~Ms~~~~~RL~kEl~~l~~~~~~~~~~~~p~~g~~~~~~p~~~~nl~~w~~~I~Gp~~tpyegg~f~~~i~fp~~YP~~P   81 (172)
T 2y9m_A            2 AMADTCMSRIVKEYKVILKTLASDDPIANPYRGIIESLNPIDETDLSKWEAIISGPSDTPYENHQFRILIEVPSSYPMNP   81 (172)
T ss_dssp             --CHHHHHHHHHHHHHHHHHHTCCCTTTCTTTTTEEEEEESSTTCTTEEEEEEECCTTSTTTTCEEEEEEECCTTTTTSC
T ss_pred             CCcHHHHHHHHHHHHHHHhccCCcccccCCCCcceEEEecCCCCchhEEEEEEECCCCCcccCCEEEEEEECCCcCCCCC
Confidence            4888999999999999998 5 3      33   466778 788999999999999999999999999999999999999


Q ss_pred             CccccccccccccccccccccccCCceeecccccCCCCCCccccCCCeEEeecCCCCCCCCCCCCCHHHHHHHHHHhCCC
Q 020053           75 PSFMLLTVRCCSLMEHKSYCLCADYGVRTNVCAFFPPQPNGRFETQTKICLSISNHHPEHWQPSWSVRTALVALIAFMPT  154 (332)
Q Consensus        75 P~V~FlT~~~~~~i~Hp~~~~~~~~~~~~n~~~~~h~~PNv~v~~~G~ICL~iL~~~~e~WsP~~ti~sVL~sI~~lL~~  154 (332)
                      |+|+|.|.    +|||                      |||+ +.+|+|||++|+  +++|+|+++|++||++|++||.+
T Consensus        82 P~v~f~t~----~i~H----------------------Pni~-~~~G~iCl~iL~--~~~W~p~~~i~~vL~si~~ll~~  132 (172)
T 2y9m_A           82 PKISFMQN----NILH----------------------CNVK-SATGEICLNILK--PEEWTPVWDLLHCVHAVWRLLRE  132 (172)
T ss_dssp             CEEEECTT----SCCC----------------------TTEE-TTTTEECCGGGS--TTTCCTTCCHHHHHHHHHHHHHS
T ss_pred             CEEEEeeC----Ceec----------------------CCCc-CCCCEEeccccC--CCCCCCcCcHHHHHHHHHHHHhC
Confidence            99999983    6788                      9953 578999999996  47899999999999999999964


Q ss_pred             -CCCChhh--hhHhhHH-hHHHHHHHHHHHHhhhCC
Q 020053          155 -NPNGALG--SLDYKKE-ERRALAIKSREAAPKFGT  186 (332)
Q Consensus       155 -nP~~~~~--a~~~~~~-dr~~y~~kare~~~kya~  186 (332)
                       +|+++++  ++.++++ |++.|.++||+|++++..
T Consensus       133 p~~~~p~n~~aa~~~~~~d~~~f~~~~~~~~~~~~~  168 (172)
T 2y9m_A          133 PVCDSPLDVDIGNIIRCGDMSAYQGIVKYFLAERER  168 (172)
T ss_dssp             CCTTSCSSHHHHHHHTTTCHHHHHHHHHHHHHHHHC
T ss_pred             CCCCCccCHHHHHHHHhCCHHHHHHHHHHHHHHHHh
Confidence             6666655  5677778 999999999999998753

>1c4z_D UBCH7, ubiquitin conjugating enzyme E2; bilobal structure, elongated shape, E3 ubiquitin ligase, E2 ubiquitin conjugating enzyme; 2.60A {Homo sapiens} SCOP: d.20.1.1 PDB: 1fbv_C* 3sy2_C 3sqv_C

Probab=100.00  E-value=2.9e-37  Score=268.39  Aligned_cols=145  Identities=28%  Similarity=0.606  Sum_probs=127.9

Q ss_pred             HHHHHHHHHHHHhhCCCCCeEEec-CCCCceEEEEEEeCCCCCCCCCCEEEEEEEcCCCCCCCCCccccccccccccccc
Q 020053           12 AVKRILQEVKEMQSNPSDDFMSLP-LEENIFEWQFAIRGPGDTEFEGGIYHGRIQLPAEYPFKPPSFMLLTVRCCSLMEH   90 (332)
Q Consensus        12 a~kRL~kEl~~l~~~p~~gi~v~p-~ednl~~W~v~I~GP~dTpYeGGiF~l~I~fP~~YP~~PP~V~FlT~~~~~~i~H   90 (332)
                      +.+||++|+++|+++++.|+.+.+ .++|+++|+++|. |++|||+||+|+++|.||++||++||+|+|.|     +|||
T Consensus         3 a~~RL~kEl~~l~~~~~~~~~~~~~~~~~l~~w~~~i~-P~~tpyegg~f~~~i~fp~~YP~~PP~v~f~t-----~i~H   76 (154)
T 1c4z_D            3 ASRRLMKELEEIRKCGMKNFRNIQVDEANLLTWQGLIV-PDNPPYDKGAFRIEINFPAEYPFKPPKITFKT-----KIYH   76 (154)
T ss_dssp             -CTTHHHHHTTCSSSCCSSCEEECSSCSSSSEEEEEEC-CCSSSCCSCCEEEEEECCTTTTTSCCEEEESS-----CCCC
T ss_pred             HHHHHHHHHHHHHhCCCCCEEEeeCCCCchheEEEEEe-CCCCCccCCeEEEEEEeCCCCCCCCCEEEEeC-----CCcc
Confidence            678999999999999999998654 6789999999998 99999999999999999999999999999999     8888


Q ss_pred             cccccccCCceeecccccCCCCCCccccCCCeEEeecCCCCCCCCCCCCCHHHHHHHHHHhCCC-CCCChhh--hhHhhH
Q 020053           91 KSYCLCADYGVRTNVCAFFPPQPNGRFETQTKICLSISNHHPEHWQPSWSVRTALVALIAFMPT-NPNGALG--SLDYKK  167 (332)
Q Consensus        91 p~~~~~~~~~~~~n~~~~~h~~PNv~v~~~G~ICL~iL~~~~e~WsP~~ti~sVL~sI~~lL~~-nP~~~~~--a~~~~~  167 (332)
                                            ||  |+.+|+|||++|+  +++|+|+++|++||++|++||.+ +|+++++  ++.+++
T Consensus        77 ----------------------Pn--v~~~G~iCl~iL~--~~~W~p~~~i~~vl~~i~~ll~~p~~~~p~n~~aa~~~~  130 (154)
T 1c4z_D           77 ----------------------PN--IDEKGQVCLPVIS--AENWKPATKTDQVIQSLIALVNDPQPEHPLRADLAEEYS  130 (154)
T ss_dssp             ----------------------TT--BCTTCBBCCTTTS--SSSCCTTCCHHHHHHHHHHHHHSCCCSSCSCHHHHHHHH
T ss_pred             ----------------------cc--CCCCCEEECCCCC--CCCCCCCCcHHHHHHHHHHHHcCCCCCchhhHHHHHHHH
Confidence                                  99  6789999999995  37899999999999999999954 6666655  567778


Q ss_pred             HhHHHHHHHHHHHHhhhCChh
Q 020053          168 EERRALAIKSREAAPKFGTPE  188 (332)
Q Consensus       168 ~dr~~y~~kare~~~kya~~~  188 (332)
                      +|++.|.++||+|+++||...
T Consensus       131 ~~~~~f~~~~~~~~~~~a~~~  151 (154)
T 1c4z_D          131 KDRKKFCKNAEEFTKKYGEKR  151 (154)
T ss_dssp             TCSSTTHHHHHHHHTTC----
T ss_pred             HhHHHHHHHHHHHHHHhcccC
Confidence            999999999999999999754

>2z5d_A Ubiquitin-conjugating enzyme E2 H; UBE2H, SGC, ligase, structural genomics, structural genomics consortium; 2.10A {Homo sapiens}

Probab=100.00  E-value=5.4e-37  Score=274.28  Aligned_cols=147  Identities=24%  Similarity=0.495  Sum_probs=129.5

Q ss_pred             CCCh--HHHHHHHHHHHHHhhCCCCCeEEecCCCCceEEEEEEeCCCCCCCCCCEEEEEEEcCCCCCCCCCccccccccc
Q 020053            7 NLKN--PAVKRILQEVKEMQSNPSDDFMSLPLEENIFEWQFAIRGPGDTEFEGGIYHGRIQLPAEYPFKPPSFMLLTVRC   84 (332)
Q Consensus         7 ~m~~--~a~kRL~kEl~~l~~~p~~gi~v~p~ednl~~W~v~I~GP~dTpYeGGiF~l~I~fP~~YP~~PP~V~FlT~~~   84 (332)
                      .|++  .+.+||++||++|+.   .|+.+.+. +|+++|+++|.||++|||+||+|+++|.||++||++||+|+|+|   
T Consensus        19 ~ms~~~~a~~RL~kEl~~l~~---~g~~v~~~-ddl~~W~~~I~GP~~tpYegG~f~l~i~fp~~YP~~PP~V~F~t---   91 (179)
T 2z5d_A           19 SMSSPSPGKRRMDTDVIKLIE---SKHEVTIL-GGLNEFVVKFYGPQGTPYEGGVWKVRVDLPDKYPFKSPSIGFMN---   91 (179)
T ss_dssp             ----CCHHHHHHHHHHHHHHH---SSSCEEEE-EETTEEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCCEEEESS---
T ss_pred             cCCCchHHHHHHHHHHHhcCc---CCCEEEEC-CCCceeEEEEECCCCCCccCCEEEEEeeCCCCCCCCCceEEEec---
Confidence            4544  589999999999985   47888877 67999999999999999999999999999999999999999999   


Q ss_pred             cccccccccccccCCceeecccccCCCCCCccccC-CCeEEeecCCCCCCCCCCCCCHHHHHHH-HHHhCCC-CCCChhh
Q 020053           85 CSLMEHKSYCLCADYGVRTNVCAFFPPQPNGRFET-QTKICLSISNHHPEHWQPSWSVRTALVA-LIAFMPT-NPNGALG  161 (332)
Q Consensus        85 ~~~i~Hp~~~~~~~~~~~~n~~~~~h~~PNv~v~~-~G~ICL~iL~~~~e~WsP~~ti~sVL~s-I~~lL~~-nP~~~~~  161 (332)
                        +|||                      ||  |+. +|.|||++|+   ++|+|+++|++||++ |++||.+ ||+++++
T Consensus        92 --~i~H----------------------PN--V~~~~G~ICL~iL~---~~WsP~~ti~~iL~s~I~~Ll~~Pn~~~p~n  142 (179)
T 2z5d_A           92 --KIFH----------------------PN--IDEASGTVCLDVIN---QTWTALYDLTNIFESFLPQLLAYPNPIDPLN  142 (179)
T ss_dssp             --CCCB----------------------TT--BCTTTCBBCHHHHH---HHCCTTCCTTHHHHTHHHHHHHSCCCSSCSC
T ss_pred             --CCcc----------------------Cc--CCCCCCeEeccccc---cCCCCCCCHHHHHHHHHHHHHhCCCCCCccC
Confidence              8888                      99  566 9999999997   899999999999999 9999854 6666654


Q ss_pred             --hhHhhHHhHHHHHHHHHHHHhhhCChhH
Q 020053          162 --SLDYKKEERRALAIKSREAAPKFGTPER  189 (332)
Q Consensus       162 --a~~~~~~dr~~y~~kare~~~kya~~~~  189 (332)
                        ++.++++|+++|.++||+|+++|+..+.
T Consensus       143 ~eaa~~~~~d~~~y~~~vr~~~~~~a~~~~  172 (179)
T 2z5d_A          143 GDAAAMYLHRPEEYKQKIKEYIQKYATEEA  172 (179)
T ss_dssp             HHHHHHHHHCHHHHHHHHHHHHHHHSSHHH
T ss_pred             HHHHHHHHHCHHHHHHHHHHHHHHHcccch
Confidence              5778889999999999999999998654

>1y8x_A Ubiquitin-conjugating enzyme E2 M; ubiquitin-conjugating enzyme E2 M, ligase; 2.40A {Homo sapiens} SCOP: d.20.1.1

Probab=100.00  E-value=4.4e-36  Score=263.22  Aligned_cols=139  Identities=20%  Similarity=0.441  Sum_probs=126.8

Q ss_pred             hHHHHHHHHHHHHHhhCCCCCeEEe-cCCCCceEEEEEEeCCCCCCCCCCEEEEEEEcCCCCCCCCCccccccccccccc
Q 020053           10 NPAVKRILQEVKEMQSNPSDDFMSL-PLEENIFEWQFAIRGPGDTEFEGGIYHGRIQLPAEYPFKPPSFMLLTVRCCSLM   88 (332)
Q Consensus        10 ~~a~kRL~kEl~~l~~~p~~gi~v~-p~ednl~~W~v~I~GP~dTpYeGGiF~l~I~fP~~YP~~PP~V~FlT~~~~~~i   88 (332)
                      +.+.+||++|+++|  ++++|+++. |.++|+++|+++| ||++|||+||+|+++|.||++||++||+|+|.|     +|
T Consensus         5 ~~~~~RL~kEl~~l--~~~~~~~~~~~~~~~l~~w~~~i-gp~~tpyegg~f~~~i~fp~~YP~~PP~v~f~t-----~i   76 (160)
T 1y8x_A            5 SAAQLRIQKDINEL--NLPKTCDISFSDPDDLLNFKLVI-CPDEGFYKSGKFVFSFKVGQGYPHDPPKVKCET-----MV   76 (160)
T ss_dssp             CHHHHHHHHHHHTC--CCCTTEEEECSSTTCTTEEEEEE-CCSSSTTTTBCEEEEEECCTTTTTSCCEEEECS-----CC
T ss_pred             cHHHHHHHHHHHhc--CCCCCeEEEeccCCccceEEEEE-CCCCCCCCCCEEEEEEeCCCcCCCCCCEEEEec-----CC
Confidence            56999999999999  577899987 8899999999998 999999999999999999999999999999999     88


Q ss_pred             cccccccccCCceeecccccCCCCCCccccCCCeEEeecCCCCCCCCCCCCCHHHHHHHHHHhCCC-CCCChhh--hhHh
Q 020053           89 EHKSYCLCADYGVRTNVCAFFPPQPNGRFETQTKICLSISNHHPEHWQPSWSVRTALVALIAFMPT-NPNGALG--SLDY  165 (332)
Q Consensus        89 ~Hp~~~~~~~~~~~~n~~~~~h~~PNv~v~~~G~ICL~iL~~~~e~WsP~~ti~sVL~sI~~lL~~-nP~~~~~--a~~~  165 (332)
                      ||                      ||  |+.+|.|||++|+   ++|+|+++|++||++|++||.+ ||+++++  ++.+
T Consensus        77 ~H----------------------Pn--v~~~G~iCl~iL~---~~W~p~~~i~~vL~~i~~ll~~Pn~~~p~n~~aa~~  129 (160)
T 1y8x_A           77 YH----------------------PN--IDLEGNVCLNILR---EDWKPVLTINSIIYGLQYLFLEPNPEDPLNKEAAEV  129 (160)
T ss_dssp             CB----------------------TT--BCTTCBBCCGGGT---TTCCTTCCHHHHHHHHHHHHHSCCCSSCSCHHHHHH
T ss_pred             cc----------------------Cc--CCCCCeEEcccch---hhccCCCCHHHHHHHHHHHHhCCCCCCccCHHHHHH
Confidence            88                      99  6788999999998   8999999999999999999965 6666654  5777


Q ss_pred             hHHhHHHHHHHHHHHHhh
Q 020053          166 KKEERRALAIKSREAAPK  183 (332)
Q Consensus       166 ~~~dr~~y~~kare~~~k  183 (332)
                      +++|++.|.++||++++.
T Consensus       130 ~~~~~~~f~~~v~~~v~~  147 (160)
T 1y8x_A          130 LQNNRRLFEQNVQRSMRG  147 (160)
T ss_dssp             HHSCHHHHHHHHHHHHHS
T ss_pred             HHHCHHHHHHHHHHHHhh
Confidence            889999999999999874

>2nvu_C NEDD8-conjugating enzyme UBC12; multifunction macromolecular complex, ubiquitin, ATP, conformational change, thioester, switch, adenylation, protein turnover, ligase; HET: ATP; 2.80A {Homo sapiens} SCOP: d.20.1.1

Probab=100.00  E-value=8.6e-36  Score=266.29  Aligned_cols=143  Identities=19%  Similarity=0.394  Sum_probs=129.6

Q ss_pred             CCCChHHHHHHHHHHHHHhhCCCCCeEEe-cCCCCceEEEEEEeCCCCCCCCCCEEEEEEEcCCCCCCCCCccccccccc
Q 020053            6 YNLKNPAVKRILQEVKEMQSNPSDDFMSL-PLEENIFEWQFAIRGPGDTEFEGGIYHGRIQLPAEYPFKPPSFMLLTVRC   84 (332)
Q Consensus         6 ~~m~~~a~kRL~kEl~~l~~~p~~gi~v~-p~ednl~~W~v~I~GP~dTpYeGGiF~l~I~fP~~YP~~PP~V~FlT~~~   84 (332)
                      .+..+.+.+||++||++|  ++++|+++. |.++|+++|+++| ||++|||+||+|+++|.||++||++||+|+|.|   
T Consensus        21 ~~~~~~~~~RL~kEl~~l--~~~~~i~~~~p~~~nl~~W~~~i-gP~~tpYegg~f~~~i~fp~~YP~~PP~v~F~t---   94 (180)
T 2nvu_C           21 SKKASAAQLRIQKDINEL--NLPKTCDISFSDPDDLLNFKLVI-CPDEGFYKSGKFVFSFKVGQGYPHDPPKVKCET---   94 (180)
T ss_dssp             CCSCCHHHHHHHHHHHTC--CCCTTEEEECSSTTCTTEEEEEE-CCCSGGGTTBCEEEEEECCTTTTTSCCEEEECS---
T ss_pred             cCCccHHHHHHHHHHHhc--CCCCCeEEEecccccccceEEEE-CCCCCCCCCCEEEEEEeCCCcCCCCCCcCceec---
Confidence            345678999999999999  577899987 8899999999999 999999999999999999999999999999999   


Q ss_pred             cccccccccccccCCceeecccccCCCCCCccccCCCeEEeecCCCCCCCCCCCCCHHHHHHHHHHhCCC-CCCChhh--
Q 020053           85 CSLMEHKSYCLCADYGVRTNVCAFFPPQPNGRFETQTKICLSISNHHPEHWQPSWSVRTALVALIAFMPT-NPNGALG--  161 (332)
Q Consensus        85 ~~~i~Hp~~~~~~~~~~~~n~~~~~h~~PNv~v~~~G~ICL~iL~~~~e~WsP~~ti~sVL~sI~~lL~~-nP~~~~~--  161 (332)
                        +|||                      ||  |+.+|.|||++|+   ++|+|+++|++||++|++||.+ ||+++++  
T Consensus        95 --~i~H----------------------PN--V~~~G~iCl~iL~---~~W~p~~~i~~vL~si~~ll~~Pn~~~p~n~~  145 (180)
T 2nvu_C           95 --MVYH----------------------PN--IDLEGNVALNILR---EDWKPVLTINSIIYGLQYLFLEPNPEDPLNKE  145 (180)
T ss_dssp             --CCCB----------------------TT--BCTTSBBCCGGGT---TSCCTTCCHHHHHHHHHHHHHSCCTTSCSSHH
T ss_pred             --cCcc----------------------CC--CCCCCcEEccccc---ccCCCCCCHHHHHHHHHHHHhCCCCCCccCHH
Confidence              8888                      99  6789999999998   8999999999999999999964 6666654  


Q ss_pred             hhHhhHHhHHHHHHHHHHHHhh
Q 020053          162 SLDYKKEERRALAIKSREAAPK  183 (332)
Q Consensus       162 a~~~~~~dr~~y~~kare~~~k  183 (332)
                      ++.++++|++.|.++||++++.
T Consensus       146 aa~~~~~d~~~f~~~v~~~v~~  167 (180)
T 2nvu_C          146 AAEVLQNNRRLFEQNVQRSMRG  167 (180)
T ss_dssp             HHHHHHHCHHHHHHHHHHHHHS
T ss_pred             HHHHHHHCHHHHHHHHHHHHhh
Confidence            6777889999999999999875

>2fo3_A Ubiquitin-conjugating enzyme; SGC, UBC, structural genomics, structural genomics consortium, unknown function; 1.86A {Plasmodium vivax} SCOP: d.20.1.1

Probab=100.00  E-value=6.4e-36  Score=252.11  Aligned_cols=119  Identities=26%  Similarity=0.503  Sum_probs=104.2

Q ss_pred             cCCCChHHHHHHHHHHHHHhhCCCCCeEEecCCCCceEEEEEEeCCCCCCCCCCEEEEEEEcCCCCCCCCCccccccccc
Q 020053            5 RYNLKNPAVKRILQEVKEMQSNPSDDFMSLPLEENIFEWQFAIRGPGDTEFEGGIYHGRIQLPAEYPFKPPSFMLLTVRC   84 (332)
Q Consensus         5 ~~~m~~~a~kRL~kEl~~l~~~p~~gi~v~p~ednl~~W~v~I~GP~dTpYeGGiF~l~I~fP~~YP~~PP~V~FlT~~~   84 (332)
                      +|||+ .+.+||++|+++|+++++.|+.+.+.++|+++|+++|.||++||||||+|+++|.||++||++||+|+|.|   
T Consensus         1 ~~~m~-~a~~RL~kEl~~l~~~~~~~~~~~~~~~~l~~w~~~i~GP~~tpYegg~f~~~i~fp~~YP~~PP~v~f~t---   76 (125)
T 2fo3_A            1 KYNMG-NANYRIQKELHNFLNNPPINCTLDVHPNNIRIWIVKYVGLENTIYANEVYKLKIIFPDDYPLKPPIVYFLQ---   76 (125)
T ss_dssp             ---------CHHHHHHHHHHHSCCTTEEEEECTTCTTEEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCCEEEECS---
T ss_pred             CCCch-HHHHHHHHHHHHHHhCCCCCEEEEeCcchhhhhheEEeCCCCCCcCCCEEEEEEEcCCCCCCCCCEEEEeC---
Confidence            58996 48899999999999999999999999999999999999999999999999999999999999999999999   


Q ss_pred             cccc-cccccccccCCceeecccccCCCCCCccccCCCeEEeecCCCCCCCCCCCCCHHHHHHHHHHhCCCCCC
Q 020053           85 CSLM-EHKSYCLCADYGVRTNVCAFFPPQPNGRFETQTKICLSISNHHPEHWQPSWSVRTALVALIAFMPTNPN  157 (332)
Q Consensus        85 ~~~i-~Hp~~~~~~~~~~~~n~~~~~h~~PNv~v~~~G~ICL~iL~~~~e~WsP~~ti~sVL~sI~~lL~~nP~  157 (332)
                        ++ ||                      ||  |+.+|+|||++|+   ++|+|+++|++||++|++||. +|+
T Consensus        77 --~i~~H----------------------Pn--v~~~G~iCl~iL~---~~W~P~~~i~~vl~si~~ll~-~p~  120 (125)
T 2fo3_A           77 --KPPKH----------------------TH--VYSNGDICLSLLG---DDYNPSLSISGLVLSIISMLS-SAK  120 (125)
T ss_dssp             --SCCCB----------------------TT--BCTTSBBCCGGGT---TTCCTTCCHHHHHHHHHHHHC----
T ss_pred             --CCCCC----------------------Cc--CCCCCEEEchhcC---CCCCCCCcHHHHHHHHHHHHh-Ccc
Confidence              76 88                      99  6789999999997   899999999999999999994 443

>4ddg_A Ubiquitin-conjugating enzyme E2 D2, ubiquitin THI OTUB1; inhibition, hydrolase-ligase complex; 3.30A {Homo sapiens} PDB: 4ddi_A

Probab=100.00  E-value=1.2e-35  Score=293.34  Aligned_cols=147  Identities=29%  Similarity=0.615  Sum_probs=137.9

Q ss_pred             hHHHHHHHHHHHHHhhCCCCCeEEecCCCCceEEEEEEeCCCCCCCCCCEEEEEEEcCCCCCCCCCcccccccccccccc
Q 020053           10 NPAVKRILQEVKEMQSNPSDDFMSLPLEENIFEWQFAIRGPGDTEFEGGIYHGRIQLPAEYPFKPPSFMLLTVRCCSLME   89 (332)
Q Consensus        10 ~~a~kRL~kEl~~l~~~p~~gi~v~p~ednl~~W~v~I~GP~dTpYeGGiF~l~I~fP~~YP~~PP~V~FlT~~~~~~i~   89 (332)
                      +.|.|||++|+++|++++++|+++.|.++|+++|+++|.||++|||+||+|+++|.||++||++||+|+|.|     +||
T Consensus         2 s~a~~RL~kEl~~l~~~~~~~~~~~p~~~nl~~w~~~i~Gp~~tpyegg~f~~~i~fp~~YP~~pP~v~f~t-----~i~   76 (399)
T 4ddg_A            2 AMALKRIHKELNDLARDPPAQCSAGPVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYPFKPPKVAFTT-----RIY   76 (399)
T ss_dssp             HHHHHHHHHHHHHHHHSCCSSEEEEEETTEEEEEEEEEECCTTSSSTTCEEEEEEECCSSTTTSCCEEEESS-----CCC
T ss_pred             cHHHHHHHHHHHHHHhCCCCCEEEEEcCCcceEEEEEEECCCCCCCCCCEEEEEEECCcccCCCCcEEEeec-----ccc
Confidence            568999999999999999999999999999999999999999999999999999999999999999999999     888


Q ss_pred             ccccccccCCceeecccccCCCCCCccccCCCeEEeecCCCCCCCCCCCCCHHHHHHHHHHhCCC-CCCChhh--hhHhh
Q 020053           90 HKSYCLCADYGVRTNVCAFFPPQPNGRFETQTKICLSISNHHPEHWQPSWSVRTALVALIAFMPT-NPNGALG--SLDYK  166 (332)
Q Consensus        90 Hp~~~~~~~~~~~~n~~~~~h~~PNv~v~~~G~ICL~iL~~~~e~WsP~~ti~sVL~sI~~lL~~-nP~~~~~--a~~~~  166 (332)
                      |                      ||  |+.+|.|||++|.   ++|+|+++|++||++|++||.+ ||+++++  ++.++
T Consensus        77 H----------------------Pn--v~~~G~iCl~il~---~~W~p~~~i~~vL~~i~~ll~~pnp~~p~n~~aa~~~  129 (399)
T 4ddg_A           77 H----------------------PN--INSNGSISLDILR---SQWSPALTISKVLLSICSLLCDPNPDDPLVPEIARIY  129 (399)
T ss_dssp             C----------------------TT--BCTTCBBCCGGGT---TSCCTTCCHHHHHHHHHHHHHSCCTTSCSSHHHHHHH
T ss_pred             c----------------------cc--cCCCCeEeCcccc---cCCCccccHHHHHHHHHHHHcCCCCCchhhHHHHHHH
Confidence            8                      99  6789999999997   8999999999999999999965 7777765  57788


Q ss_pred             HHhHHHHHHHHHHHHhhhCChh
Q 020053          167 KEERRALAIKSREAAPKFGTPE  188 (332)
Q Consensus       167 ~~dr~~y~~kare~~~kya~~~  188 (332)
                      ++|+++|.++||+|+++|+...
T Consensus       130 ~~d~~~y~~~~~~~~~~~a~~~  151 (399)
T 4ddg_A          130 KTDREKYNRIAREWTQKYAMGG  151 (399)
T ss_dssp             HHCHHHHHHHHHHHHHHHTSCT
T ss_pred             HHCHHHHHHHHHHHHHHhhccc
Confidence            9999999999999999999764

>1yf9_A Ubiquitin carrier protein 4; SGPP, structural genomics, PSI, protein structure initiative ubiquitin conjugating enzyme; 2.00A {Leishmania major} SCOP: d.20.1.1

Probab=100.00  E-value=2.8e-36  Score=267.43  Aligned_cols=143  Identities=22%  Similarity=0.479  Sum_probs=127.0

Q ss_pred             HHHHHHHHHHHHHhhCCCCCeEEecCCCCceEEEEEEeCCCCCCCCCCEEEEEEEcCCCCCCCCCccccccccccccccc
Q 020053           11 PAVKRILQEVKEMQSNPSDDFMSLPLEENIFEWQFAIRGPGDTEFEGGIYHGRIQLPAEYPFKPPSFMLLTVRCCSLMEH   90 (332)
Q Consensus        11 ~a~kRL~kEl~~l~~~p~~gi~v~p~ednl~~W~v~I~GP~dTpYeGGiF~l~I~fP~~YP~~PP~V~FlT~~~~~~i~H   90 (332)
                      .+.+||++|+++|++++. ++   +.++|+++|+++|.||++|||+||+|+++|.||++||++||+|+|.|     +|||
T Consensus        12 ~~~~RL~~El~~l~~~~~-~v---~~~~~l~~w~~~I~GP~~tpyegg~f~~~i~fp~~YP~~PP~v~F~t-----~i~H   82 (171)
T 1yf9_A           12 RSNRRREMDYMRLCNSTR-KV---YPSDTVAEFWVEFKGPEGTPYEDGTWMLHVQLPSDYPFKSPSIGFCN-----RILH   82 (171)
T ss_dssp             -CCHHHHHHHHHHHSSSS-CE---EECSSTTEEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCCEEEESS-----CCCB
T ss_pred             cHHHHHHHHHHHHHhCCC-CC---CCCCCceEEEEEEECCCCCCccCceEEEEEEcCCCCCCCCCeEEeec-----Cccc
Confidence            578999999999999874 43   45889999999999999999999999999999999999999999999     8888


Q ss_pred             cccccccCCceeecccccCCCCCCcccc-CCCeEEeecCCCCCCCCCCCCCHHHHHHHH-HHhCCC-CCCChhh--hhHh
Q 020053           91 KSYCLCADYGVRTNVCAFFPPQPNGRFE-TQTKICLSISNHHPEHWQPSWSVRTALVAL-IAFMPT-NPNGALG--SLDY  165 (332)
Q Consensus        91 p~~~~~~~~~~~~n~~~~~h~~PNv~v~-~~G~ICL~iL~~~~e~WsP~~ti~sVL~sI-~~lL~~-nP~~~~~--a~~~  165 (332)
                                            ||  |+ .+|.|||++|+   ++|+|+++|++||++| ++||.+ ||+++++  ++.+
T Consensus        83 ----------------------PN--i~~~~G~iCl~iL~---~~W~p~~~i~~vL~sil~~ll~~Pn~~~p~n~~aa~~  135 (171)
T 1yf9_A           83 ----------------------PN--VDERSGSVCLDVIN---QTWTPMYQLENIFDVFLPQLLRYPNPSDPLNVQAAHL  135 (171)
T ss_dssp             ----------------------TT--BCTTTCBBCHHHHH---HHCCTTCCTHHHHHTHHHHHHHSCCSSCCSCHHHHHH
T ss_pred             ----------------------cc--CcccCCeEeccccc---cCCCCCCcHHHHHHHHHHHHHhCCCCCCcccHHHHHH
Confidence                                  99  56 58999999997   8999999999999998 688854 5566654  5677


Q ss_pred             hHHhHHHHHHHHHHHHhhhCChhH
Q 020053          166 KKEERRALAIKSREAAPKFGTPER  189 (332)
Q Consensus       166 ~~~dr~~y~~kare~~~kya~~~~  189 (332)
                      +++|++.|.+++|+|+++|++...
T Consensus       136 ~~~d~~~y~~~vr~~~~~~a~~~~  159 (171)
T 1yf9_A          136 LHADRVGFDALLREHVSTHATPQK  159 (171)
T ss_dssp             HHHCHHHHHHHHHHHHHHHCCHHH
T ss_pred             HHHCHHHHHHHHHHHHHHHcChhh
Confidence            889999999999999999998653

>2f4w_A Ubiquitin-conjugating enzyme E2, J2; endoplasmic reticulum, ligase, UBL conjugation pathway, structural genomics consortium (SGC); 2.00A {Homo sapiens} SCOP: d.20.1.1

Probab=100.00  E-value=4.8e-35  Score=262.86  Aligned_cols=146  Identities=38%  Similarity=0.769  Sum_probs=118.9

Q ss_pred             CCChHHHHHHHHHHHHHhhCCCCCeEEecCCCCceEEEEEEeCCCCCCCCCCEEEEEEEcCCCCCCCCCccccccccccc
Q 020053            7 NLKNPAVKRILQEVKEMQSNPSDDFMSLPLEENIFEWQFAIRGPGDTEFEGGIYHGRIQLPAEYPFKPPSFMLLTVRCCS   86 (332)
Q Consensus         7 ~m~~~a~kRL~kEl~~l~~~p~~gi~v~p~ednl~~W~v~I~GP~dTpYeGGiF~l~I~fP~~YP~~PP~V~FlT~~~~~   86 (332)
                      +..+.+.+||++|+++|++++++||.+.|.++|+++|+++|.||++|||+||+|+++|.||++||++||+|+|+|     
T Consensus        10 ~~~~~a~~RL~kEl~~l~~~~~~~i~~~p~~~nl~~W~~~I~GP~~TpYegG~f~l~i~fP~~YP~~PP~v~f~T-----   84 (187)
T 2f4w_A           10 RAPTTATQRLKQDYLRIKKDPVPYICAEPLPSNILEWHYVVRGPEMTPYEGGYYHGKLIFPREFPFKPPSIYMIT-----   84 (187)
T ss_dssp             ----CHHHHHHHHHHHHHHSCCTTEEEEEETTEEEEEEEEEECCTTSTTTTCEEEEEEECCTTTTSSCCEEEECS-----
T ss_pred             CCccHHHHHHHHHHHHHHhCCCCCEEEEEcCCccceeEEEEeCCCCCCCCCCEEEEEEEcCCCCCCCCCcccccC-----
Confidence            456679999999999999999999999999999999999999999999999999999999999999999999999     


Q ss_pred             cccccccccccCCceeecccccCCCCCCccccCCCeEEeecCCCCCCCCCCCCCHHHHHHHHHHhCCCCCCChhhhhHhh
Q 020053           87 LMEHKSYCLCADYGVRTNVCAFFPPQPNGRFETQTKICLSISNHHPEHWQPSWSVRTALVALIAFMPTNPNGALGSLDYK  166 (332)
Q Consensus        87 ~i~Hp~~~~~~~~~~~~n~~~~~h~~PNv~v~~~G~ICL~iL~~~~e~WsP~~ti~sVL~sI~~lL~~nP~~~~~a~~~~  166 (332)
                      +  |                      ||  ++.+|+|||++|++|++.|+|+++|++||++|++||.+ |+...+++...
T Consensus        85 ~--~----------------------~~--~~~~G~ICL~iL~~~~~~W~P~~ti~~vL~si~sll~~-p~p~~g~~~~~  137 (187)
T 2f4w_A           85 P--N----------------------GR--FKCNTRLCLSITDFHPDTWNPAWSVSTILTGLLSFMVE-KGPTLGSIETS  137 (187)
T ss_dssp             C--C----------------------SS--BCTTSCBC----------CCTTCCHHHHHHHHHHHHHS-CCCCTTBCCCC
T ss_pred             C--C----------------------ce--eccCCeEeeeccccCccCCCCcCcHHHHHHHHHHHhcC-CCCCCcccccC
Confidence            4  5                      66  67789999999977679999999999999999999943 44445555556


Q ss_pred             HHhHHHHHHHHHHHHhhh
Q 020053          167 KEERRALAIKSREAAPKF  184 (332)
Q Consensus       167 ~~dr~~y~~kare~~~ky  184 (332)
                      ..+|+.|++.+++|..+.
T Consensus       138 ~~~r~~~a~~s~~~~~~~  155 (187)
T 2f4w_A          138 DFTKRQLAVQSLAFNLKD  155 (187)
T ss_dssp             HHHHHHHHHHHHHHHHTC
T ss_pred             hHHHHHHHHHHHHHhhcC
Confidence            688999999999998765

>2h2y_A Ubiquitin-conjugating enzyme; structural genomics, unknown function, structural genomics consortium, SGC; 2.80A {Plasmodium falciparum 3D7}

Probab=100.00  E-value=7.3e-35  Score=249.26  Aligned_cols=120  Identities=28%  Similarity=0.514  Sum_probs=112.0

Q ss_pred             ccCCCChHHHHHHHHHHHHHhhCCCCCeEEecCCCCceEEEEEEeCCCCCCCCCCEEEEEEEcCCCCCCCCCcccccccc
Q 020053            4 DRYNLKNPAVKRILQEVKEMQSNPSDDFMSLPLEENIFEWQFAIRGPGDTEFEGGIYHGRIQLPAEYPFKPPSFMLLTVR   83 (332)
Q Consensus         4 ~~~~m~~~a~kRL~kEl~~l~~~p~~gi~v~p~ednl~~W~v~I~GP~dTpYeGGiF~l~I~fP~~YP~~PP~V~FlT~~   83 (332)
                      .+++|+. +.+||++|+++|+++++.|+.+.+.++|+++|+++|.||++|||+||+|+++|.||++||++||+|+|.|  
T Consensus        14 ~~~~~~~-~~~RL~kEl~~l~~~~~~~~~~~~~~~nl~~W~~~I~GP~~tpYegg~f~~~i~fp~~YP~~PP~v~f~t--   90 (136)
T 2h2y_A           14 TKYNLGN-ANYRIQKELNNFLKNPPINCTIDVHPSNIRIWIVQYVGLENTIYANEVYKIKIIFPDNYPLKPPIVYFLQ--   90 (136)
T ss_dssp             SCCCTTS-HHHHHHHHHHHHHHSCCTTEEEEECTTCTTEEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCCEEEECS--
T ss_pred             hhccchH-HHHHHHHHHHHHHhCCCCCeEEEeccccccccEEEEECCCCCceeCCEEEEEEEeCCCCCCCCCEEEEeC--
Confidence            4677765 8899999999999999999999999999999999999999999999999999999999999999999999  


Q ss_pred             ccccc-cccccccccCCceeecccccCCCCCCccccCCCeEEeecCCCCCCCCCCCCCHHHHHHHHHHhCCCCCC
Q 020053           84 CCSLM-EHKSYCLCADYGVRTNVCAFFPPQPNGRFETQTKICLSISNHHPEHWQPSWSVRTALVALIAFMPTNPN  157 (332)
Q Consensus        84 ~~~~i-~Hp~~~~~~~~~~~~n~~~~~h~~PNv~v~~~G~ICL~iL~~~~e~WsP~~ti~sVL~sI~~lL~~nP~  157 (332)
                         ++ ||                      ||  |+.+|+|||++|+   ++|+|+++|++||++|++|| .+|+
T Consensus        91 ---~i~~H----------------------Pn--v~~~G~ICl~iL~---~~WsP~~ti~~vL~si~sll-~~p~  134 (136)
T 2h2y_A           91 ---KPPKH----------------------TH--VYSNGDICLSVLG---DDYNPSLSISGLILSIISML-SSAK  134 (136)
T ss_dssp             ---SCCCC----------------------TT--BCTTCCBCCGGGT---TTCCTTCCHHHHHHHHHHHH-SSSC
T ss_pred             ---CCCCC----------------------Cc--CCCCCEEECcccc---CCCCCCCcHHHHHHHHHHHH-hCcC
Confidence               75 88                      99  6789999999997   89999999999999999999 4454

>3o2u_A NEDD8-conjugating enzyme UBC12; E2 conjugase, ligase; 2.00A {Saccharomyces cerevisiae} PDB: 3tdi_C

Probab=100.00  E-value=7.9e-35  Score=262.07  Aligned_cols=144  Identities=19%  Similarity=0.366  Sum_probs=130.5

Q ss_pred             CCChHHHHHHHHHHHHHhhCCCCCeEEe----cCCCCce---EEEEEEeCCCCCCCCCCEEEEEEEcCCCCCCCCCcccc
Q 020053            7 NLKNPAVKRILQEVKEMQSNPSDDFMSL----PLEENIF---EWQFAIRGPGDTEFEGGIYHGRIQLPAEYPFKPPSFML   79 (332)
Q Consensus         7 ~m~~~a~kRL~kEl~~l~~~p~~gi~v~----p~ednl~---~W~v~I~GP~dTpYeGGiF~l~I~fP~~YP~~PP~V~F   79 (332)
                      +..+.+.+||++||++|+  +++|+++.    |.++|++   +|+++|. |++|||+||+|+++|.||++||++||+|+|
T Consensus        25 ~~~s~a~~RL~kEl~~l~--~~~~i~~~~~~~p~~~nl~~~~~w~~~I~-p~~tpyegg~f~~~i~fp~~YP~~PP~v~f  101 (190)
T 3o2u_A           25 PNLSAARIRLKRDLDSLD--LPPTVTLNVITSPDSADRSQSPKLEVIVR-PDEGYYNYGSINFNLDFNEVYPIEPPKVVC  101 (190)
T ss_dssp             CCCCHHHHHHHHHHHTCC--CCTTEEEEEEECTTCCCTTSCCEEEEEEC-CSSSTTTTCCEEEEEECCTTTTTSCCEEEE
T ss_pred             CCccHHHHHHHHHHHhcc--CCCCEEEEecCCCCCccCCcCCeEEEEEc-CCCCCCCCCEEEEEEECCCCCCCCCceeEE
Confidence            445679999999999998  67899887    8899999   9999997 788999999999999999999999999999


Q ss_pred             ccccccccccccccccccCCceeecccccCCCCCCccccCCCeEEeecCCCCCCCCCCCCCHHHHHHHHHHhCCC-CCCC
Q 020053           80 LTVRCCSLMEHKSYCLCADYGVRTNVCAFFPPQPNGRFETQTKICLSISNHHPEHWQPSWSVRTALVALIAFMPT-NPNG  158 (332)
Q Consensus        80 lT~~~~~~i~Hp~~~~~~~~~~~~n~~~~~h~~PNv~v~~~G~ICL~iL~~~~e~WsP~~ti~sVL~sI~~lL~~-nP~~  158 (332)
                      .|     +|||                      ||  |+.+|.|||++|.   ++|+|+++|++||++|++||.+ ||++
T Consensus       102 ~t-----~i~H----------------------Pn--V~~~G~iCl~iL~---~~W~p~~~i~~vL~~i~~ll~~pn~~~  149 (190)
T 3o2u_A          102 LK-----KIFH----------------------PN--IDLKGNVCLNILR---EDWSPALDLQSIITGLLFLFLEPNPND  149 (190)
T ss_dssp             CS-----CCCC----------------------TT--BCTTSBBCCGGGT---TTCCTTCCHHHHHHHHHHHHHSCCTTS
T ss_pred             ec-----Cccc----------------------CC--CCCCCeEechhcc---CCCCCCCCHHHHHHHHHHHHhCCCCCc
Confidence            99     8888                      99  6789999999998   8999999999999999999965 7777


Q ss_pred             hhh--hhHhhHHhHHHHHHHHHHHHhhhC
Q 020053          159 ALG--SLDYKKEERRALAIKSREAAPKFG  185 (332)
Q Consensus       159 ~~~--a~~~~~~dr~~y~~kare~~~kya  185 (332)
                      +++  ++.++++|+++|.++||+|++++.
T Consensus       150 pln~~aa~~~~~d~~~f~~~ar~~~~~~~  178 (190)
T 3o2u_A          150 PLNKDAAKLLCEGEKEFAEAVRLTMSGGS  178 (190)
T ss_dssp             CSSHHHHHHHHTCHHHHHHHHHHHHBTCE
T ss_pred             chhHHHHHHHHHCHHHHHHHHHHHHHhcC
Confidence            765  577888999999999999997653

>4ds2_A Ubiquitin-conjugating enzyme E2, putative; structural genomics, PSI, protein structure initiative; 2.63A {Trypanosoma cruzi}

Probab=100.00  E-value=7.5e-35  Score=256.61  Aligned_cols=141  Identities=19%  Similarity=0.421  Sum_probs=124.8

Q ss_pred             CCCChHHHHHHHHHHHHHhhCC------------CCCeEEecCCCCceEEEEEEeCCCCCCCC--CCEEEEEEEcCCCCC
Q 020053            6 YNLKNPAVKRILQEVKEMQSNP------------SDDFMSLPLEENIFEWQFAIRGPGDTEFE--GGIYHGRIQLPAEYP   71 (332)
Q Consensus         6 ~~m~~~a~kRL~kEl~~l~~~p------------~~gi~v~p~ednl~~W~v~I~GP~dTpYe--GGiF~l~I~fP~~YP   71 (332)
                      ..|++.+.|||++|+++|++++            +.|+.+.+.++|+++|+++|.||++|||+  ||+|+++|.||++||
T Consensus         3 ~~Ms~~a~kRL~kEl~~l~~~~~~~~~~~~~~~~~~~i~~~~~~~nl~~w~~~i~Gp~~tpye~~gg~f~~~i~fp~~YP   82 (167)
T 4ds2_A            3 GSMKNISNKRIIKDLKLLLEEVDANNEANSSGSPHSTAIFSVDTDTIYNWILKVKAPADSVYGGAGNTYQLSVLFSDDYP   82 (167)
T ss_dssp             --CCCCCCHHHHHHHHHHHHHHHHHTTC----CCSSCEEEEEEESSTTEEEEEEECCTTSGGGTTCCEEEEEEECCTTTT
T ss_pred             ccccHHHHHHHHHHHHHHHhCcccccccccccCCCCcEEEEeCCCcccEEEEEEECCCCCCccCCCCEEEEEEECCCCCC
Confidence            4688889999999999999987            67899999999999999999999999999  999999999999999


Q ss_pred             CCCCccccccccccccccccccccccCCceeecccccCCCCCCccccCCCeEEeecCCCCCCCCCCCCCHHHHHH-HHHH
Q 020053           72 FKPPSFMLLTVRCCSLMEHKSYCLCADYGVRTNVCAFFPPQPNGRFETQTKICLSISNHHPEHWQPSWSVRTALV-ALIA  150 (332)
Q Consensus        72 ~~PP~V~FlT~~~~~~i~Hp~~~~~~~~~~~~n~~~~~h~~PNv~v~~~G~ICL~iL~~~~e~WsP~~ti~sVL~-sI~~  150 (332)
                      ++||+|+|.|     +|||                      ||  |+.+|.|||++|+   ++|+|+++++++|+ .|++
T Consensus        83 ~~pP~v~f~t-----~i~H----------------------Pn--v~~~G~iCl~il~---~~W~p~~~i~~vll~~l~~  130 (167)
T 4ds2_A           83 HEPPTVRFVT-----PVYS----------------------PL--VTGEGGICDRMVN---DFWTPDQHASDVIKLVLDR  130 (167)
T ss_dssp             TSCCEEEESS-----CCCC----------------------SS--CCTTSCCCTHHHH---TTCCTTSCHHHHHHHHHHH
T ss_pred             CCCCEEEEeC-----Cccc----------------------cc--CCCCCEEEcccCc---CCCCCCCChHHHHHHHHHH
Confidence            9999999999     8888                      99  6789999999997   89999999999765 4556


Q ss_pred             hCCC---CCCChhh--hhHhhHHhHHHHHHHHH
Q 020053          151 FMPT---NPNGALG--SLDYKKEERRALAIKSR  178 (332)
Q Consensus       151 lL~~---nP~~~~~--a~~~~~~dr~~y~~kar  178 (332)
                      |+..   ||+++++  |+.++++|+++|.++||
T Consensus       131 l~~~~~pn~~~p~n~eaa~l~~~d~~~f~~~vr  163 (167)
T 4ds2_A          131 VFSQYKSRRDDDVNPEARHYLEKFPQDFAARVR  163 (167)
T ss_dssp             HHTSTTSCCSCCCCHHHHHHHHHCHHHHHHHHT
T ss_pred             HHhcCCCCCcchHhHHHHHHHHHCHHHHHHHHh
Confidence            6642   5566655  67888999999999997

>3ceg_A Baculoviral IAP repeat-containing protein 6; apoptosis, ligase, protease inhibitor, thiol protease inhibitor, UBL conjugation pathway; HET: MSE; 2.01A {Homo sapiens}

Probab=100.00  E-value=1.6e-33  Score=271.75  Aligned_cols=159  Identities=25%  Similarity=0.337  Sum_probs=135.6

Q ss_pred             cCCCChHHHHHHHHHHHHHhhCCCCC----eEEecCCCCceEEEEEEeCCCCCCCCCCEEEEEEEcCCCCCCCCCccccc
Q 020053            5 RYNLKNPAVKRILQEVKEMQSNPSDD----FMSLPLEENIFEWQFAIRGPGDTEFEGGIYHGRIQLPAEYPFKPPSFMLL   80 (332)
Q Consensus         5 ~~~m~~~a~kRL~kEl~~l~~~p~~g----i~v~p~ednl~~W~v~I~GP~dTpYeGGiF~l~I~fP~~YP~~PP~V~Fl   80 (332)
                      ..+|+..+.+||++|+++|++++++|    +.+.+.++|++.|+++|.||++|||+||+|+|+|.||++||++||+|+|.
T Consensus        70 ~~~~s~~~~kRL~kEl~~L~k~~p~g~~~~i~v~~~ednl~~w~~~I~GP~~TpYegG~F~l~I~fP~dYP~~PP~V~F~  149 (323)
T 3ceg_A           70 NDANSAARARRLAQEAVTLSTSLPLSSSSSVFVRCDEERLDIMKVLITGPADTPYANGCFEFDVYFPQDYPSSPPLVNLE  149 (323)
T ss_dssp             CCCCCHHHHHHHHHHHHHHHHHCCCCSSCCEEEEEESSCTTEEEEEEEBCTTSTTBTCEEEEEEECCTTTTTSCCEEEEC
T ss_pred             CCCCCHHHHHHHHHHHHHHHhCCCCCcccceeecccCCCccccEEEEeCCCCCCcCCCEEEEEEeCCCCCCCCCCeEEEe
Confidence            34688999999999999999988775    45677899999999999999999999999999999999999999999999


Q ss_pred             cccccccccccccccccCCceeecccccCCCCCCccccCCCeEEeecCCCC----CCCCCCCC-CHHHHHHHHHHhCC-C
Q 020053           81 TVRCCSLMEHKSYCLCADYGVRTNVCAFFPPQPNGRFETQTKICLSISNHH----PEHWQPSW-SVRTALVALIAFMP-T  154 (332)
Q Consensus        81 T~~~~~~i~Hp~~~~~~~~~~~~n~~~~~h~~PNv~v~~~G~ICL~iL~~~----~e~WsP~~-ti~sVL~sI~~lL~-~  154 (332)
                      |+-..+.|||                      ||  |+.+|+|||++|+.+    .+.|+|++ +|++||++|++||. .
T Consensus       150 T~~g~~~ifH----------------------PN--V~~~G~ICLsiL~~~~g~~~e~WsPa~stI~~VLlsIqsLL~~~  205 (323)
T 3ceg_A          150 TTGGHSVRFN----------------------PN--LYNDGKVCLSILNTWHGRPEEKWNPQTSSFLQVLVSVQSLILVA  205 (323)
T ss_dssp             CSTTTTCCCB----------------------TT--BCTTCBBCCGGGTSSCCCGGGSCCTTTCCHHHHHHHHHHHTSCS
T ss_pred             ccCCCccccc----------------------CC--CCcCCeEechhhccccCCCcCCCCcCcCCHHHHHHHHHHHHcCC
Confidence            9211112777                      99  678999999999733    26899999 89999999999995 3


Q ss_pred             CC--CChhh----hhHhhHHhHHHHHHHHHHHHhhhCCh
Q 020053          155 NP--NGALG----SLDYKKEERRALAIKSREAAPKFGTP  187 (332)
Q Consensus       155 nP--~~~~~----a~~~~~~dr~~y~~kare~~~kya~~  187 (332)
                      +|  +++..    +..++.+|++.|.+++|+|+.+|++.
T Consensus       206 ~Pn~~dP~~~~a~a~~~~~~d~~~Y~~~vr~~t~k~A~~  244 (323)
T 3ceg_A          206 EPYFNEPGYERSRGTPSGTQSSREYDGNIRQATVKWAML  244 (323)
T ss_dssp             SGGGGSTTGGGGTTSHHHHHHHHHHHHHHHHHHHHHTTH
T ss_pred             CCCCCCccCHHHHHhhhhhhhHHHHHHHHHHHHHHHhhH
Confidence            55  45543    24677899999999999999999974

>2a7l_A Hypothetical ubiquitin-conjugating enzyme LOC55284; structural genomics consortium, (SGC), ligase; 1.82A {Homo sapiens} SCOP: d.20.1.1

Probab=100.00  E-value=4.7e-34  Score=244.86  Aligned_cols=115  Identities=26%  Similarity=0.548  Sum_probs=107.1

Q ss_pred             cCCCChHHHHHHHHHHHHHhhCCCCCeEEe--cCCCCceEEEEEEeCCCCCCCCCCEEEEEEEcCCCCCCCCCccccccc
Q 020053            5 RYNLKNPAVKRILQEVKEMQSNPSDDFMSL--PLEENIFEWQFAIRGPGDTEFEGGIYHGRIQLPAEYPFKPPSFMLLTV   82 (332)
Q Consensus         5 ~~~m~~~a~kRL~kEl~~l~~~p~~gi~v~--p~ednl~~W~v~I~GP~dTpYeGGiF~l~I~fP~~YP~~PP~V~FlT~   82 (332)
                      ..+|++. .+||++|+++|++++++|+.+.  +.++|+++|+++|.||+|||||||+|+++|.||++||++||+|+|.| 
T Consensus        17 ~~~Ms~~-~~RL~kEl~~l~~~~~~gi~v~~~~~~~nl~~W~~~I~GP~~TpYegG~f~l~i~fp~~YP~~PP~v~F~T-   94 (136)
T 2a7l_A           17 RGSMASM-QKRLQKELLALQNDPPPGMTLNEKSVQNSITQWIVDMEGAPGTLYEGEKFQLLFKFSSRYPFDSPQVMFTG-   94 (136)
T ss_dssp             GGGGTTS-CHHHHHHHHHHHHSCCTTCCCCTTCCCCSCEEEEEEEECCTTSTTTTCEEEEEEEECTTTTTSCCEEEEES-
T ss_pred             chhccHH-HHHHHHHHHHHHhCCCCCEEEEEeeCccccceeEEEEECCCCCccccEEEEEEEECCCCCCCCCCEEEEeC-
Confidence            4567664 3999999999999999999864  88999999999999999999999999999999999999999999999 


Q ss_pred             ccccccc--ccccccccCCceeecccccCCCCCCccccCCCeEEeecCCCCCCCCCCCCCHHHHHHHHHHhC
Q 020053           83 RCCSLME--HKSYCLCADYGVRTNVCAFFPPQPNGRFETQTKICLSISNHHPEHWQPSWSVRTALVALIAFM  152 (332)
Q Consensus        83 ~~~~~i~--Hp~~~~~~~~~~~~n~~~~~h~~PNv~v~~~G~ICL~iL~~~~e~WsP~~ti~sVL~sI~~lL  152 (332)
                          ++|  |                      ||  |+.+|+|||++|+   ++|+|+++|++||++|++||
T Consensus        95 ----~i~~~H----------------------PN--V~~~G~ICL~iL~---~~WsP~~ti~~vL~sI~slL  135 (136)
T 2a7l_A           95 ----ENIPVH----------------------PH--VYSNGHICLSILT---EDWSPALSVQSVCLSIISML  135 (136)
T ss_dssp             ----SCCCCB----------------------TT--BCTTCBBCCGGGT---TTCCTTSCHHHHHHHHHHHT
T ss_pred             ----CCcCCC----------------------cc--CCCCCeEEchhcC---CCCCCCCcHHHHHHHHHHHh
Confidence                787  7                      99  6789999999998   89999999999999999998

>2a4d_A Ubiquitin-conjugating enzyme E2 variant 1; alternative splicing, nuclear protein, UBL conjugation pathway,ubiquitin, ligase, structural genomics; 1.69A {Homo sapiens} SCOP: d.20.1.1 PDB: 2c2v_C 1j7d_A 1j74_A 1zgu_A

Probab=99.98  E-value=2e-32  Score=240.81  Aligned_cols=126  Identities=25%  Similarity=0.325  Sum_probs=110.1

Q ss_pred             CCCChHHHHHHHHHHHHHhhCCCCC-eEEec-CCCC--ceEEEEEEeCCCCCCCCCCEEEEEEEcCCCCCCCCCcccccc
Q 020053            6 YNLKNPAVKRILQEVKEMQSNPSDD-FMSLP-LEEN--IFEWQFAIRGPGDTEFEGGIYHGRIQLPAEYPFKPPSFMLLT   81 (332)
Q Consensus         6 ~~m~~~a~kRL~kEl~~l~~~p~~g-i~v~p-~edn--l~~W~v~I~GP~dTpYeGGiF~l~I~fP~~YP~~PP~V~FlT   81 (332)
                      ..+..++.+||++|+++|++++++| +.+.+ .++|  +++|+++|.||++||||||+|+++|.||++||++||+|+|+|
T Consensus        20 ~~v~~p~~~RL~kEl~~l~~~~~~g~~~~~~~~~~d~~l~~W~~~I~GP~~TpYegG~f~l~i~fp~~YP~~PP~v~F~T   99 (160)
T 2a4d_A           20 TGVKVPRNFRLLEELEEGQKGVGDGTVSWGLEDDEDMTLTRWTGMIIGPPRTIYENRIYSLKIECGPKYPEAPPFVRFVT   99 (160)
T ss_dssp             -CCCHHHHHHHHHHHHHHHSCCTTSSEEEEESSTTCTTCCEEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCCEEEESB
T ss_pred             CeeechHHHHHHHHHHHHHhCCCCCcEEEEecCCccccceeeEEEEECCCCCCccCeEEEEEEECCCcCCCCCcEEEEec
Confidence            3466789999999999999999888 77776 4554  999999999999999999999999999999999999999999


Q ss_pred             ccccccccccccccccCCceeecccccCCCCCCcccc-CCCeEEeecCCCCCCCCCCCCCHHHHHHHHHHhCCC--CCCC
Q 020053           82 VRCCSLMEHKSYCLCADYGVRTNVCAFFPPQPNGRFE-TQTKICLSISNHHPEHWQPSWSVRTALVALIAFMPT--NPNG  158 (332)
Q Consensus        82 ~~~~~~i~Hp~~~~~~~~~~~~n~~~~~h~~PNv~v~-~~G~ICL~iL~~~~e~WsP~~ti~sVL~sI~~lL~~--nP~~  158 (332)
                           +|||                      ||  |+ .+|+||+++|+.+ ++|+|+++|++||++|++||.+  |+++
T Consensus       100 -----~i~H----------------------PN--V~~~~G~ICl~iL~~~-~~WsP~~ti~~vL~sI~~ll~~~pn~~~  149 (160)
T 2a4d_A          100 -----KINM----------------------NG--VNSSNGVVDPRAISVL-AKWQNSYSIKVVLQELRRLMMSKENMKL  149 (160)
T ss_dssp             -----CCCC----------------------TT--BCTTTCBBCGGGSHHH-HTCCTTCCHHHHHHHHHHHHTSTTTTTC
T ss_pred             -----Ccee----------------------CC--EECCCCEEehhhcCCc-cCCCccCcHHHHHHHHHHHHccCCCCCC
Confidence                 8888                      99  56 7899999998633 6899999999999999999965  4445


Q ss_pred             hhh
Q 020053          159 ALG  161 (332)
Q Consensus       159 ~~~  161 (332)
                      +++
T Consensus       150 P~n  152 (160)
T 2a4d_A          150 PQP  152 (160)
T ss_dssp             CCC
T ss_pred             CCC
Confidence            543

>2q0v_A Ubiquitin-conjugating enzyme E2, putative; malaria, structural G structural genomics consortium, SGC, ligase; 2.40A {Plasmodium falciparum} PDB: 3e95_C

Probab=99.97  E-value=1.8e-32  Score=239.85  Aligned_cols=129  Identities=22%  Similarity=0.286  Sum_probs=110.5

Q ss_pred             CCChHHHHHHHHHHHHHhhC-CCCCeEEecCC-C--CceEEEEEEeCCCCCCCCCCEEEEEEEcCCCCCCCCCccccccc
Q 020053            7 NLKNPAVKRILQEVKEMQSN-PSDDFMSLPLE-E--NIFEWQFAIRGPGDTEFEGGIYHGRIQLPAEYPFKPPSFMLLTV   82 (332)
Q Consensus         7 ~m~~~a~kRL~kEl~~l~~~-p~~gi~v~p~e-d--nl~~W~v~I~GP~dTpYeGGiF~l~I~fP~~YP~~PP~V~FlT~   82 (332)
                      ....++.+||++||++|+++ ++.|+++.+.+ +  |+++|+++|.||++||||||+|+++|.||++||++||+|+|+| 
T Consensus        17 ~~~~~~~~RL~kEl~~l~~~~~~~~i~~~~~~~~d~nl~~W~~~I~GP~~TpYegG~f~l~i~fp~~YP~~PP~v~F~t-   95 (156)
T 2q0v_A           17 QGIVPRSFRLLDELERGQKGNVSEGVSFGLESADDITLSNWSCTIFGQPGTVFENRIYSLTIFCDDNYPDSPPTVKFDT-   95 (156)
T ss_dssp             SSCCCHHHHHHHHHHHHHCC-CCTTEEEEESSTTCTTCCEEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCCEEEESB-
T ss_pred             cccchHHHHHHHHHHHHHhCCCCCCeEEEECCCccccceeeEEEEECCCCCCcCCcEEEEEEECCCcCCCCCCeEEEEc-
Confidence            44566899999999999998 78899988853 3  6999999999999999999999999999999999999999999 


Q ss_pred             cccccccccccccccCCceeecccccCCCCCCccccCCCeE---EeecCCCCCCCCCCCCCHHHHHHHHHHhCCC-CCCC
Q 020053           83 RCCSLMEHKSYCLCADYGVRTNVCAFFPPQPNGRFETQTKI---CLSISNHHPEHWQPSWSVRTALVALIAFMPT-NPNG  158 (332)
Q Consensus        83 ~~~~~i~Hp~~~~~~~~~~~~n~~~~~h~~PNv~v~~~G~I---CL~iL~~~~e~WsP~~ti~sVL~sI~~lL~~-nP~~  158 (332)
                          +|||                      ||  |+.+|+|   ||++|+    +|+|+++|++||++|++||.+ +|++
T Consensus        96 ----~i~H----------------------PN--V~~~G~icisCL~iL~----~WsP~~ti~~vL~sI~~ll~~Pn~~~  143 (156)
T 2q0v_A           96 ----KIEM----------------------SC--VDNCGRVIKNNLHILK----NWNRNYTIETILISLRQEMLSSANKR  143 (156)
T ss_dssp             ----CCCC----------------------TT--BCTTSBBCGGGSHHHH----TCCTTCCHHHHHHHHHHHTTSTTTTT
T ss_pred             ----cccc----------------------CC--CccCCeEehhhccccc----CCCCcCcHHHHHHHHHHHHhCCCCCC
Confidence                8888                      99  6788999   899995    499999999999999999964 5555


Q ss_pred             hhh--hhHhhHH
Q 020053          159 ALG--SLDYKKE  168 (332)
Q Consensus       159 ~~~--a~~~~~~  168 (332)
                      +++  ++.+|.+
T Consensus       144 p~n~~aa~~y~~  155 (156)
T 2q0v_A          144 LPQPNEGEVYSN  155 (156)
T ss_dssp             CCCCCTTCBC--
T ss_pred             cCChHHHHHhhh
Confidence            443  3444433

>1jat_B Ubiquitin-conjugating enzyme variant MMS2; UEV, ligase; 1.60A {Saccharomyces cerevisiae} SCOP: d.20.1.1 PDB: 2gmi_B

Probab=99.97  E-value=4.7e-32  Score=232.03  Aligned_cols=111  Identities=21%  Similarity=0.397  Sum_probs=99.1

Q ss_pred             HHHHHHHHHHHHHhhC-CCCCeEEecCC-C--CceEEEEEEeCCCCCCCCCCEEEEEEEcCCCCCCCCCccccccccccc
Q 020053           11 PAVKRILQEVKEMQSN-PSDDFMSLPLE-E--NIFEWQFAIRGPGDTEFEGGIYHGRIQLPAEYPFKPPSFMLLTVRCCS   86 (332)
Q Consensus        11 ~a~kRL~kEl~~l~~~-p~~gi~v~p~e-d--nl~~W~v~I~GP~dTpYeGGiF~l~I~fP~~YP~~PP~V~FlT~~~~~   86 (332)
                      ++.+||++|+++|+++ ++.|+++.+.+ +  |+++|+++|.||++||||||+|+++|.||++||++||+|+|.|     
T Consensus         6 ~~~~RL~kEl~~l~~~~~~~~~~~~~~~~~d~nl~~w~~~i~GP~~tpyegg~f~~~i~fp~~YP~~PP~v~f~t-----   80 (138)
T 1jat_B            6 PRNFRLLEELEKGEKGFGPESCSYGLADSDDITMTKWNGTILGPPHSNHENRIYSLSIDCGPNYPDSPPKVTFIS-----   80 (138)
T ss_dssp             CHHHHHHHHHHHHHC----CCEEEEESSTTCTTCCEEEEEEECCSSSTTTTCEEEEEEECCTTTTTSCCEEEESB-----
T ss_pred             HHHHHHHHHHHHHHhcCCCCCEEEEeCCCCCCcceEEEEEEECCCCCCccceEEEEEEECCCCCCCCCCceEEEc-----
Confidence            5779999999999998 78899998853 3  5999999999999999999999999999999999999999999     


Q ss_pred             cccccccccccCCceeecccccCCCCCCccccCC-CeE--EeecCCCCCCCCCCCCCHHHHHHHHHHhCCC
Q 020053           87 LMEHKSYCLCADYGVRTNVCAFFPPQPNGRFETQ-TKI--CLSISNHHPEHWQPSWSVRTALVALIAFMPT  154 (332)
Q Consensus        87 ~i~Hp~~~~~~~~~~~~n~~~~~h~~PNv~v~~~-G~I--CL~iL~~~~e~WsP~~ti~sVL~sI~~lL~~  154 (332)
                      +|||                      ||  |+.+ |.|  ||++|+    +|+|+++|++||++|++||.+
T Consensus        81 ~i~H----------------------Pn--v~~~~G~i~~cL~~l~----~W~p~~~i~~vl~~i~~ll~~  123 (138)
T 1jat_B           81 KINL----------------------PC--VNPTTGEVQTDFHTLR----DWKRAYTMETLLLDLRKEMAT  123 (138)
T ss_dssp             CCCC----------------------TT--BCTTTCBBCTTSHHHH----TCCTTCCHHHHHHHHHHHHTS
T ss_pred             cccc----------------------CC--EeCCCCEEeeecccCC----CCCCcCcHHHHHHHHHHHHcC
Confidence            8888                      99  5665 999  999984    799999999999999999965

>1zuo_A Hypothetical protein LOC92912; ligase, ubiquitin-conjugating enzyme, structural genomics consortium ,SGC; 1.80A {Homo sapiens} SCOP: d.20.1.1 PDB: 2qgx_A

Probab=99.97  E-value=1.3e-32  Score=247.08  Aligned_cols=120  Identities=11%  Similarity=0.339  Sum_probs=108.7

Q ss_pred             ccCCCChHHHHHHHHHHHHHhhCC---CCCeEEecCCCCceEEEEEEeCC-CCCCCCC-----------CEEEEEEEcCC
Q 020053            4 DRYNLKNPAVKRILQEVKEMQSNP---SDDFMSLPLEENIFEWQFAIRGP-GDTEFEG-----------GIYHGRIQLPA   68 (332)
Q Consensus         4 ~~~~m~~~a~kRL~kEl~~l~~~p---~~gi~v~p~ednl~~W~v~I~GP-~dTpYeG-----------GiF~l~I~fP~   68 (332)
                      ....|+..+.+||++||++|++++   +.++.+.|.++|+++|+++|.|| ++|||+|           |+|+|+|.||+
T Consensus        20 g~~~~s~~a~~RL~kEl~~l~~~~~~~~~~~~~~p~~dnl~~W~~~I~Gp~~~tpy~ggl~~~~~~~g~g~f~l~i~fp~   99 (186)
T 1zuo_A           20 GAVSGSVQASDRLMKELRDIYRSQSYKTGIYSVELINDSLYDWHVKLQKVDPDSPLHSDLQILKEKEGIEYILLNFSFKD   99 (186)
T ss_dssp             ----CCHHHHHHHHHHHHHHHTSHHHHTTSEEEEEETTEEEEEEEEECCCCTTSHHHHHHHHHHHHHSCCSEEEEEECCT
T ss_pred             CcccccHHHHHHHHHHHHHHHhCCCCCCCcEEEEEcCCccceeEEEEECCCCCCCccccchhhccccCceEEEEEEECCC
Confidence            456789999999999999999998   68899999999999999999998 8999998           89999999999


Q ss_pred             CCCCCCCccccccccccccccccccccccCCceeecccccCCCCC-CccccCCCeEEeecCCCCCCCCCCCCCHHHHHHH
Q 020053           69 EYPFKPPSFMLLTVRCCSLMEHKSYCLCADYGVRTNVCAFFPPQP-NGRFETQTKICLSISNHHPEHWQPSWSVRTALVA  147 (332)
Q Consensus        69 ~YP~~PP~V~FlT~~~~~~i~Hp~~~~~~~~~~~~n~~~~~h~~P-Nv~v~~~G~ICL~iL~~~~e~WsP~~ti~sVL~s  147 (332)
                      +||++||+|+|.|     ++||                      | |  |+.+|.|||++|.  +++|+|+++|++||++
T Consensus       100 ~YP~~PP~V~f~t-----pi~h----------------------Pnn--V~~~G~ICL~iL~--~~~WsP~~ti~~VL~s  148 (186)
T 1zuo_A          100 NFPFDPPFVRVVL-----PVLS----------------------GGY--VLGGGALCMELLT--KQGWSSAYSIESVIMQ  148 (186)
T ss_dssp             TTTSSCCEEEEEE-----SCEE----------------------STT--BCGGGBBCCGGGS--TTTCCTTSCHHHHHHH
T ss_pred             CCCCCCCeEEEeC-----CccC----------------------CCc--cCCCCcEEeccCC--CCCCCCcCcHHHHHHH
Confidence            9999999999999     8888                      8 6  6789999999996  3789999999999999


Q ss_pred             HHHhCCC
Q 020053          148 LIAFMPT  154 (332)
Q Consensus       148 I~~lL~~  154 (332)
                      |++||.+
T Consensus       149 I~slL~~  155 (186)
T 1zuo_A          149 INATLVK  155 (186)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHcC
Confidence            9999954

>2hlw_A Ubiquitin-conjugating enzyme E2 variant 1; ubiquitin-conjugating enzyme variant, UBC13, HUBC13, polyubiquitination, ligase, signaling protein; NMR {Homo sapiens}

Probab=99.97  E-value=6.5e-32  Score=239.45  Aligned_cols=123  Identities=25%  Similarity=0.332  Sum_probs=107.8

Q ss_pred             ChHHHHHHHHHHHHHhhCCCCC-eEEec-CCCC--ceEEEEEEeCCCCCCCCCCEEEEEEEcCCCCCCCCCccccccccc
Q 020053            9 KNPAVKRILQEVKEMQSNPSDD-FMSLP-LEEN--IFEWQFAIRGPGDTEFEGGIYHGRIQLPAEYPFKPPSFMLLTVRC   84 (332)
Q Consensus         9 ~~~a~kRL~kEl~~l~~~p~~g-i~v~p-~edn--l~~W~v~I~GP~dTpYeGGiF~l~I~fP~~YP~~PP~V~FlT~~~   84 (332)
                      ..++.+||++||++|++++++| +.+.+ .++|  +++|+++|.||++||||||+|+++|.||++||++||+|+|+|   
T Consensus        33 ~~p~~~RL~kEl~~l~~~~~~g~~~~~~~~~~d~nl~~W~~~I~GP~~TpYegG~f~l~i~fp~~YP~~PP~v~F~T---  109 (170)
T 2hlw_A           33 KVPRNFRLLEELEEGQKGVGDGTVSWGLEDDEDMTLTRWTGMIIGPPRTIYENRIYSLKIECGPKYPEAPPFVRFVT---  109 (170)
T ss_dssp             CCCHHHHHHHHHHHHHHCCGGGCEEEEESSTTCSSCCBEEEEECCCSSSTTSSCCBCEEEECCSSCTTSCCEEEECB---
T ss_pred             cCHHHHHHHHHHHHHHhCCCCCcEEEEecCcccccceeeEEEEeCCCCCCcCCcEEEEEEECCCCCCCCCCeeEEec---
Confidence            4568999999999999999888 66766 4554  999999999999999999999999999999999999999999   


Q ss_pred             cccccccccccccCCceeecccccCCCCCCcccc-CCCeEEeecCCCCCCCCCCCCCHHHHHHHHHHhCCC--CCCChhh
Q 020053           85 CSLMEHKSYCLCADYGVRTNVCAFFPPQPNGRFE-TQTKICLSISNHHPEHWQPSWSVRTALVALIAFMPT--NPNGALG  161 (332)
Q Consensus        85 ~~~i~Hp~~~~~~~~~~~~n~~~~~h~~PNv~v~-~~G~ICL~iL~~~~e~WsP~~ti~sVL~sI~~lL~~--nP~~~~~  161 (332)
                        +|||                      ||  |+ .+|.||+++|+.+ ++|+|+++|++||++|++||.+  |++++++
T Consensus       110 --~i~H----------------------PN--V~~~~G~ICl~iL~~~-~~WsP~~ti~~vL~sI~~ll~~~pn~~~P~n  162 (170)
T 2hlw_A          110 --KINM----------------------NG--VNSSNGVVDPRAISVL-AKWQNSYSIKVVLQELRRLMMSKENMKLPQP  162 (170)
T ss_dssp             --CCCC----------------------SS--BCSSSCBBCTTTCHHH-HTCCSSCCHHHHHHHHHHHHHSTTTSSSCCC
T ss_pred             --cccc----------------------CC--EeCCCCEEEhhhcCCC-CCCCccCcHHHHHHHHHHHHccCCCCCCCCC
Confidence              8888                      99  55 7999999998633 6899999999999999999965  4445443

>2z6o_A UFM1-conjugating enzyme 1; UFC1, ubiquitin, UBL, polymorphism, UBL conjugation pathway, ligase; 1.60A {Homo sapiens} PDB: 2z6p_A 1ywz_A 2in1_A 2k07_A 3e2g_A 3evx_A

Probab=99.86  E-value=2.8e-23  Score=183.54  Aligned_cols=98  Identities=16%  Similarity=0.242  Sum_probs=88.7

Q ss_pred             HHHHHHHHHHHHhhCCCCCeEEecCCCCceEEEEEEeCCCCCCCCCC----------EEEEEEEcCCCCCCCCCcccccc
Q 020053           12 AVKRILQEVKEMQSNPSDDFMSLPLEENIFEWQFAIRGPGDTEFEGG----------IYHGRIQLPAEYPFKPPSFMLLT   81 (332)
Q Consensus        12 a~kRL~kEl~~l~~~p~~gi~v~p~ednl~~W~v~I~GP~dTpYeGG----------iF~l~I~fP~~YP~~PP~V~FlT   81 (332)
                      -.+||++|++.|++      ++.+..+|++.|.++|.||.+|+|+||          .|.++|.||++||++||+|+|.+
T Consensus        33 w~~RL~eE~k~L~k------~v~p~k~n~~~W~~ii~Gp~gT~WeGgcw~~~~~~~y~F~L~~~fPe~YP~~PPeV~F~~  106 (172)
T 2z6o_A           33 WVQRLKEEYQSLIR------YVENNKNADNDWFRLESNKEGTRWFGKCWYIHDLLKYEFDIEFDIPITYPTTAPEIAVPE  106 (172)
T ss_dssp             HHHHHHHHHHHHHH------HHHHHHHTTCCCEEEEECTTSCEEEEEEEEEETTEEEEEEEEEECCTTTTTSCCCCBCGG
T ss_pred             HHHHHHHHHHHHHH------HhccCccccceeEEeecCCCCCcccCcccccccccceEEEEEEECCCCCCCCCCeeeeCC
Confidence            39999999999999      467788899999999999999999999          99999999999999999999999


Q ss_pred             cccccc-ccccccccccCCceeecccccCCCCCCccccCCCeEEeecCCCCCC---CCCCCCCHHHHHH
Q 020053           82 VRCCSL-MEHKSYCLCADYGVRTNVCAFFPPQPNGRFETQTKICLSISNHHPE---HWQPSWSVRTALV  146 (332)
Q Consensus        82 ~~~~~~-i~Hp~~~~~~~~~~~~n~~~~~h~~PNv~v~~~G~ICL~iL~~~~e---~WsP~~ti~sVL~  146 (332)
                           + +||                      ||  +|.+|+|||++|.  ..   .|+|.++|.++|.
T Consensus       107 -----~~~~h----------------------pn--mY~~G~ICLdIL~--kp~Ws~~~P~~~IahiL~  144 (172)
T 2z6o_A          107 -----LDGKT----------------------AK--MYRGGKICLTDHF--KPLWARNVPKFGLAHLMA  144 (172)
T ss_dssp             -----GTTTC----------------------SS--BCTTSBBCCCTTH--HHHHHHHTTSCCHHHHHH
T ss_pred             -----CCCCC----------------------CC--CCCCCcEechhhc--cccccccCCccCHHHHHh
Confidence                 6 888                      99  7999999999994  13   3559999999984

>3r3q_A Suppressor protein STP22 of temperature-sensitive factor receptor and arginine permease...; endosomal sorting, ESCRT-I; 1.45A {Saccharomyces cerevisiae} SCOP: d.20.1.2 PDB: 3r42_A 1uzx_A*

Probab=99.54  E-value=1.1e-14  Score=128.43  Aligned_cols=116  Identities=16%  Similarity=0.252  Sum_probs=87.3

Q ss_pred             HHHHHHHHHHhhCCC---CCeEEecCCCCceEEEEEEeCCCCCCCCCCE---EEEEEEcCCCCCCCCCccccccc--ccc
Q 020053           14 KRILQEVKEMQSNPS---DDFMSLPLEENIFEWQFAIRGPGDTEFEGGI---YHGRIQLPAEYPFKPPSFMLLTV--RCC   85 (332)
Q Consensus        14 kRL~kEl~~l~~~p~---~gi~v~p~ednl~~W~v~I~GP~dTpYeGGi---F~l~I~fP~~YP~~PP~V~FlT~--~~~   85 (332)
                      +|..+|+.++.+.-+   +...+...+|...++.+.+.|.-.++|+||.   |.+.|.||.+||++||.|.|.++  .+.
T Consensus        31 ~~~~~dv~~~l~~yp~L~p~t~~yt~~dG~~~~Ll~l~Gtipv~y~g~~~Yn~pi~IwlP~~YP~~PP~v~v~p~t~~m~  110 (162)
T 3r3q_A           31 RTTFHDSLALLDNFHSLRPRTRVFTHSDGTPQLLLSIYGTISTGEDGSSPHSIPVIMWVPSMYPVKPPFISINLENFDMN  110 (162)
T ss_dssp             HHHHHHHHHHHHHCTTEEEEEEEEECTTSCEEEEEEEEEEEECSCCTTSCCEEEEEEECCTTTTTSCCEEEECGGGCCTT
T ss_pred             hHHHHHHHHHHHhCCCCceeeeeEEcCCCChheEEEEECccCccccCcccccccEEEEeCcccCCCCCEEEEECCCcccc
Confidence            567778887765332   1222334467777788888887789999999   88999999999999999977541  111


Q ss_pred             ---cccc-ccccccccCCceeecccccCCCCCCccccCCCeEEeecCCCCCCCCCC-CCCHHHHHHHHHHhCCC-CCC
Q 020053           86 ---SLME-HKSYCLCADYGVRTNVCAFFPPQPNGRFETQTKICLSISNHHPEHWQP-SWSVRTALVALIAFMPT-NPN  157 (332)
Q Consensus        86 ---~~i~-Hp~~~~~~~~~~~~n~~~~~h~~PNv~v~~~G~ICL~iL~~~~e~WsP-~~ti~sVL~sI~~lL~~-nP~  157 (332)
                         ..|+ |                      ||  |+.+|+||+++|.    +|+| ..++.++|.+|+++|.+ ||+
T Consensus       111 ~~~~~I~~h----------------------pn--VD~~G~I~lpyL~----~W~p~~s~L~~ll~~l~~lf~ep~~d  160 (162)
T 3r3q_A          111 TISSSLPIQ----------------------EY--IDSNGWIALPILH----AWDPAAMNLIMVVQELMSLLHEPPQD  160 (162)
T ss_dssp             TSCTTSTHH----------------------HH--BCTTSBBCCGGGG----SCCGGGCCHHHHHHHHHHTTSCCCCC
T ss_pred             ccccccCCC----------------------CC--CCCCCcEeCcccc----cCCCCcCcHHHHHHHHHHHhcCCCCC
Confidence               0144 5                      89  6899999999994    6999 68999999999999954 443

>3kpa_A Probable ubiquitin fold modifier conjugating ENZY; UBL conjugation pathway, ligase, structural genomics, PSI; 2.20A {Leishmania major} SCOP: d.20.1.4

Probab=99.49  E-value=3.4e-15  Score=130.04  Aligned_cols=91  Identities=19%  Similarity=0.363  Sum_probs=74.8

Q ss_pred             hHHHHHHHHHHHHHhhCCCCCeEEecCCCCceEEEEEEeCCCCCCCCCC----------EEEEEEEcCCCCCCCCCcccc
Q 020053           10 NPAVKRILQEVKEMQSNPSDDFMSLPLEENIFEWQFAIRGPGDTEFEGG----------IYHGRIQLPAEYPFKPPSFML   79 (332)
Q Consensus        10 ~~a~kRL~kEl~~l~~~p~~gi~v~p~ednl~~W~v~I~GP~dTpYeGG----------iF~l~I~fP~~YP~~PP~V~F   79 (332)
                      ..=..||..||..|.+      ++....++-..|...+.||.+|+|+|+          .|.++|.||.+||+.||.|.|
T Consensus        33 ~~w~~RlkeEy~alI~------yv~~nK~~d~dWf~~~sn~~GT~W~G~cw~~~~~~kyeFkLefdiP~tYP~tPPeI~F  106 (168)
T 3kpa_A           33 DKWTARLKEEYASLIT------YVEHNKASDSHWFHLESNPQGTRWYGTCWTYYKNEKYEFEMNFDIPVTYPQAPPEIAL  106 (168)
T ss_dssp             HHHHHHHHHHHHHHHH------HHHHHHHTTCCCEEEEECTTSCEEEEEEEEEETTEEEEEEEEEECCTTTTTSCCCCBC
T ss_pred             HHHHHHHHHHHHHHHH------HHHhcccccCCeeeecCCCCCCcccCccceeeccceeEEEEEEeCCccCCCCCCEeec
Confidence            3457899999999976      233333334489999999999999999          999999999999999999999


Q ss_pred             ccccccccccccccccccCCceeecccccCCCCCCccccCCCeEEeecCCCCCCCCCCCCC
Q 020053           80 LTVRCCSLMEHKSYCLCADYGVRTNVCAFFPPQPNGRFETQTKICLSISNHHPEHWQPSWS  140 (332)
Q Consensus        80 lT~~~~~~i~Hp~~~~~~~~~~~~n~~~~~h~~PNv~v~~~G~ICL~iL~~~~e~WsP~~t  140 (332)
                      .+.    .++|                      ||  ++.+|+|||+++      |+|.|+
T Consensus       107 p~l----dgkt----------------------~k--mYr~GkICLdIh------wkPlW~  133 (168)
T 3kpa_A          107 PEL----EGKT----------------------VK--MYRGGKICMTTH------FFPLWA  133 (168)
T ss_dssp             GGG----TTTC----------------------SS--EETTTEECCCTT------HHHHHH
T ss_pred             ccc----cCcC----------------------cc--ccCCCcEEeccc------cchhhH
Confidence            992    2667                      99  799999999975      777653

>3obq_A Tumor susceptibility gene 101 protein; protein transprot, ubiquitin binding, protein transport; 1.40A {Homo sapiens} SCOP: d.20.1.2 PDB: 3obs_A 3obu_A 3obx_A 3p9g_A* 3p9h_A* 2f0r_A 1kpp_A 1kpq_A 1m4p_A 1m4q_A 1s1q_A

Probab=99.13  E-value=3.2e-11  Score=104.63  Aligned_cols=106  Identities=18%  Similarity=0.307  Sum_probs=78.9

Q ss_pred             HHHHHHHHhhCCCC---CeEEe-cCCCCceEEEEEEeCCCCCCCCCCEEEE--EEEcCCCCCCCCCccccccccccccc-
Q 020053           16 ILQEVKEMQSNPSD---DFMSL-PLEENIFEWQFAIRGPGDTEFEGGIYHG--RIQLPAEYPFKPPSFMLLTVRCCSLM-   88 (332)
Q Consensus        16 L~kEl~~l~~~p~~---gi~v~-p~ednl~~W~v~I~GP~dTpYeGGiF~l--~I~fP~~YP~~PP~V~FlT~~~~~~i-   88 (332)
                      ..+|+.++.+.-+.   ..... -...+++.|.++|.    .+|+|+.|.+  .|.||.+||++||.| |.++  +..| 
T Consensus        25 t~~dv~~vl~~yp~L~p~~~~y~G~~~~LL~l~GtIp----v~y~g~~y~iPi~Iwlp~~YP~~pP~v-fv~p--t~~m~   97 (146)
T 3obq_A           25 TVRETVNVITLYKDLKPVLDSYGTGSRELMNLTGTIP----VPYRGNTYNIPICLWLLDTYPYNPPIC-FVKP--TSSMT   97 (146)
T ss_dssp             HHHHHHHHHHHCTTEEEEEEESSSTTCEEEEEEEEEE----EECSSCEEEEEEEEECCTTTTTSCCEE-EECC--CTTEE
T ss_pred             hHHHHHHHHHhCCCCceEeeeeeCChheEEEEEEEee----eeecCccccceEEEEeCccCCCCCCEE-EEeC--CCCCE
Confidence            35577766554321   11111 23568999999997    6899999994  999999999999999 6662  1112 


Q ss_pred             --cccccccccCCceeecccccCCCCCCccccCCCeEEeecCCCCCCCCCC-CCCHHHHHHHHHHhCCCCC
Q 020053           89 --EHKSYCLCADYGVRTNVCAFFPPQPNGRFETQTKICLSISNHHPEHWQP-SWSVRTALVALIAFMPTNP  156 (332)
Q Consensus        89 --~Hp~~~~~~~~~~~~n~~~~~h~~PNv~v~~~G~ICL~iL~~~~e~WsP-~~ti~sVL~sI~~lL~~nP  156 (332)
                        .|                      ||  ++.+|+||++.|.    +|++ ..+|.+++..++..|.++|
T Consensus        98 I~~~----------------------~~--Vd~~G~i~lpyL~----~W~~~~snL~~ll~~l~~~F~~ep  140 (146)
T 3obq_A           98 IKTG----------------------KH--VDANGKIYLPYLH----EWKHPQSDLLGLIQVMIVVFGDEP  140 (146)
T ss_dssp             ECCB----------------------TT--BCTTCBBCCHHHH----TCCTTTCCHHHHHHHHHHHHHHSC
T ss_pred             ECCC----------------------CC--CCCCCCEeccccc----ccCCCCCCHHHHHHHHHHHHhhCC
Confidence              33                      88  7899999999995    4987 8999999999999986544

>2yz0_A Serine/threonine-protein kinase GCN2; A-B-B-B-B-A-A, amino acid starvation signal response, EIF2alpha kinase, transferase; NMR {Saccharomyces cerevisiae}

Probab=93.54  E-value=0.31  Score=40.15  Aligned_cols=69  Identities=16%  Similarity=0.237  Sum_probs=44.9

Q ss_pred             HHHHHHHHHHHHhhCCCCCeEEecCC------CCceEEEEEEeCCCCCCCCCCEEEEEEEcCCCCCCCCCcccccc
Q 020053           12 AVKRILQEVKEMQSNPSDDFMSLPLE------ENIFEWQFAIRGPGDTEFEGGIYHGRIQLPAEYPFKPPSFMLLT   81 (332)
Q Consensus        12 a~kRL~kEl~~l~~~p~~gi~v~p~e------dnl~~W~v~I~GP~dTpYeGGiF~l~I~fP~~YP~~PP~V~FlT   81 (332)
                      ...+-..|+..|+.--++.+...-..      +....+.+.|....+ .-..-.+.+.|.||.+||..+|.|.+..
T Consensus        11 ~~e~q~~EleaL~SIY~d~~~~~~~~~~~~~~~~~~~f~I~l~~~~~-~~~~~~~~L~~~~p~~YP~~~P~i~l~~   85 (138)
T 2yz0_A           11 YYEIQCNELEAIRSIYMDDFTDLTKRKSSWDKQPQIIFEITLRSVDK-EPVESSITLHFAMTPMYPYTAPEIEFKN   85 (138)
T ss_dssp             HHHHHHHHHHHHHTTSSSSEECCSTTSSSSCSSCCSCEEEEEECSSC-SSCCCEEEEEEECCSSTTSSCCEEEEEC
T ss_pred             hHHHHHHHHHHHHHHChhhheecccccccccCCCCcEEEEEEecCCC-CCCceEEEEEEECCCCCCCCCCeEEEec
Confidence            44566788888887555555432111      124567777773322 1123477899999999999999988766

>2ebm_A RWD domain-containing protein 1; alpha+beta sandwich fold, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=93.25  E-value=0.25  Score=40.16  Aligned_cols=68  Identities=16%  Similarity=0.221  Sum_probs=45.4

Q ss_pred             HHHHHHHHHHHHhhCCCCCeEEecCCCCceEEEEEEeCCCCCCCCCCEEEEEEEcCCCCCCCCCcccccc
Q 020053           12 AVKRILQEVKEMQSNPSDDFMSLPLEENIFEWQFAIRGPGDTEFEGGIYHGRIQLPAEYPFKPPSFMLLT   81 (332)
Q Consensus        12 a~kRL~kEl~~l~~~p~~gi~v~p~ednl~~W~v~I~GP~dTpYeGGiF~l~I~fP~~YP~~PP~V~FlT   81 (332)
                      ...+...|+..|..--++.+.+.  .+....+.+.|..-.+..-+.-.+.+.|.||.+||..||.+.+..
T Consensus        11 ~~e~q~~EleaL~sIy~d~~~~~--~~~~~~~~i~i~~~~~~~~~~~~~~L~v~~p~~YP~~~P~i~l~~   78 (128)
T 2ebm_A           11 YGEEQRNELEALESIYPDSFTVL--SENPPSFTITVTSEAGENDETVQTTLKFTYSEKYPDEAPLYEIFS   78 (128)
T ss_dssp             HHHHHHHHHHHHHHHCSSSEEEC--CSSSCEEEECCBCCCCTTSCCCBEEEEEECCSSTTTSCCEEEEEE
T ss_pred             hHHHHHHHHHHHHHHccCceEEc--cCCCCEEEEEEecCCCCCcCceeEEEEEEeCCCCCCCCceEEEEc
Confidence            45667889999987555556543  222356666665222222234478899999999999999987765

>2day_A Ring finger protein 25; ligase, metal-binding, UB1 conjugation, UB1 conjugation pathway, RWD domain, alpha+beta sandwich fold, structural genomics; NMR {Homo sapiens} SCOP: d.20.1.3 PDB: 2dmf_A

Probab=92.47  E-value=0.51  Score=38.30  Aligned_cols=67  Identities=18%  Similarity=0.249  Sum_probs=44.2

Q ss_pred             HHHHHHHHHhhCCCCCeEEecCC--CCceEEEEEEeCCCCCCC--CCCEEEEEEEcCCCCCCCCCcccccc
Q 020053           15 RILQEVKEMQSNPSDDFMSLPLE--ENIFEWQFAIRGPGDTEF--EGGIYHGRIQLPAEYPFKPPSFMLLT   81 (332)
Q Consensus        15 RL~kEl~~l~~~p~~gi~v~p~e--dnl~~W~v~I~GP~dTpY--eGGiF~l~I~fP~~YP~~PP~V~FlT   81 (332)
                      ....|+..|+.--++.+......  .+...+.+.|..+.+..-  ..-.+.+.|.||.+||..+|.+.+.+
T Consensus        12 ~~~~EleaL~SIY~de~~~~~~~~~~~~~~~~i~l~~~~~~~~~~~~~~~~L~~~~p~~YP~~~P~i~~~~   82 (128)
T 2day_A           12 VLPSEVEVLESIYLDELQVIKGNGRTSPWEIYITLHPATAEDQDSQYVCFTLVLQVPAEYPHEVPQISIRN   82 (128)
T ss_dssp             HHHHHHHHHHHHSTTTEEEECCTTSSCCEEEEEEECCSCCSSSSCCCCEEEEEEEECSSTTSSCCEEEEEE
T ss_pred             HHHHHHHHHHHHCCCceEEecCCCCCCCeEEEEEEecCCCCCccccceeEEEEEEcCCCCCCCCCCeEEEc
Confidence            57889998887655666554322  234556666653222111  12478899999999999999988776

>3zqs_A E3 ubiquitin-protein ligase fancl; HET: P6G; 2.00A {Homo sapiens}

Probab=90.78  E-value=2.1  Score=38.09  Aligned_cols=82  Identities=16%  Similarity=0.306  Sum_probs=60.6

Q ss_pred             HHHHHHHHHhhCCCCCeEEecCCCCceEEEEEEeCCCCCCCCCCEEEEEEEcCCCCCCCCCccccccccccccccccccc
Q 020053           15 RILQEVKEMQSNPSDDFMSLPLEENIFEWQFAIRGPGDTEFEGGIYHGRIQLPAEYPFKPPSFMLLTVRCCSLMEHKSYC   94 (332)
Q Consensus        15 RL~kEl~~l~~~p~~gi~v~p~ednl~~W~v~I~GP~dTpYeGGiF~l~I~fP~~YP~~PP~V~FlT~~~~~~i~Hp~~~   94 (332)
                      +|.+|+.++-=+.     +.-.+.++...++.+..-     .|....++|.++.+||.++|.+...-             
T Consensus         5 ~li~Ei~~iGW~~-----l~~id~~~~~i~l~~~D~-----~gR~H~l~v~l~~~yp~~~P~~~~Dl-------------   61 (186)
T 3zqs_A            5 SLIEEIGTLGWDK-----LVYADTCFSTIKLKAEDA-----SGREHLITLKLKAKYPAESPDYFVDF-------------   61 (186)
T ss_dssp             SHHHHHHHHCGGG-----EEEECTTSSEEEEEEECT-----TSCEEEEEEECCTTTTTSCCEEECCC-------------
T ss_pred             HHHHHHHHhCCce-----eeeecCCccEEEEEEEeC-----CCCeEEEEEEECCCCCCCCCeeEEcC-------------
Confidence            6888999883322     222356788899999832     36788999999999999999876655             


Q ss_pred             cccCCceeecccccCCCCCCccccCCCeEEeecCCCCCCCCCCCCCHHHHHHHHHHhC
Q 020053           95 LCADYGVRTNVCAFFPPQPNGRFETQTKICLSISNHHPEHWQPSWSVRTALVALIAFM  152 (332)
Q Consensus        95 ~~~~~~~~~n~~~~~h~~PNv~v~~~G~ICL~iL~~~~e~WsP~~ti~sVL~sI~~lL  152 (332)
                                        |-- +           .   -.|++..++.+++...+.+|
T Consensus        62 ------------------P~~-~-----------~---~~w~~~ssL~~v~~qF~~~L   86 (186)
T 3zqs_A           62 ------------------PVP-F-----------C---ASWTPQSSLISIYSQFLAAI   86 (186)
T ss_dssp             ------------------SSC-C-----------C---CCCCTTCCHHHHHHHHHHHH
T ss_pred             ------------------CCC-c-----------c---cccCCCccHHHHHHHHHHHH
Confidence                              220 0           1   35999999999999888776

>2ebk_A RWD domain-containing protein 3; alpha+beta sandwich fold, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=87.40  E-value=1.4  Score=35.85  Aligned_cols=66  Identities=14%  Similarity=0.143  Sum_probs=41.0

Q ss_pred             HHHHHHHHHhhCCCC--CeEEecC-CCCceEEEEEEeCCCCCCCCCCEEEEEEEcCCCCCCCCCcccccc
Q 020053           15 RILQEVKEMQSNPSD--DFMSLPL-EENIFEWQFAIRGPGDTEFEGGIYHGRIQLPAEYPFKPPSFMLLT   81 (332)
Q Consensus        15 RL~kEl~~l~~~p~~--gi~v~p~-ednl~~W~v~I~GP~dTpYeGGiF~l~I~fP~~YP~~PP~V~FlT   81 (332)
                      +...|+..|+.--.+  .+...-. ..+...+.+.|...... =..-.+.+.|.||.+||..+|.+.+..
T Consensus        11 ~q~~EleaL~SIy~d~~e~~~~~~~~~~~~~f~i~l~~~~~~-~~~~~~~L~~~~p~~YP~~~P~i~l~~   79 (128)
T 2ebk_A           11 PVQEELSVLAAIFCRPHEWEVLSRSETDGTVFRIHTKAEGFM-DADIPLELVFHLPVNYPSCLPGISINS   79 (128)
T ss_dssp             HHHHHHHHHHHHHCCTTTCCCSEECSSSCEEEEEEEECCTTT-TCCCEEEEEEEECSSTTSSCCCCCCCC
T ss_pred             HHHHHHHHHHHHcCCCCceEEecCCCCCCCeEEEEecCCCCC-CCCeEEEEEEECCCCCCCCCCeEEEEh
Confidence            466788888763322  3432211 12346788888732210 012378999999999999999987654

>1ukx_A GCN2, GCN2 EIF2alpha kinase; UBC-like fold, triple beta-turns, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.20.1.3

Probab=86.76  E-value=2.5  Score=34.46  Aligned_cols=69  Identities=19%  Similarity=0.186  Sum_probs=43.5

Q ss_pred             HHHHHHHHHHHHhhCCCCCeEEecCCC-----CceEEEEEEeCCCC-CCC-CCCEEEEEEEcCCCCCCCCCcccccc
Q 020053           12 AVKRILQEVKEMQSNPSDDFMSLPLEE-----NIFEWQFAIRGPGD-TEF-EGGIYHGRIQLPAEYPFKPPSFMLLT   81 (332)
Q Consensus        12 a~kRL~kEl~~l~~~p~~gi~v~p~ed-----nl~~W~v~I~GP~d-TpY-eGGiF~l~I~fP~~YP~~PP~V~FlT   81 (332)
                      ...+...|+..|+.--.+.+.......     ....+.+.|. |.+ .-- ..-.+.|.|.||.+||..+|.|.+..
T Consensus        11 ~~e~q~~EleaL~SIY~d~~~~~~~~~~~~~~~~~~~~i~l~-~~~~~~~~~~~~~~L~v~~p~~YP~~~P~i~l~~   86 (137)
T 1ukx_A           11 YSQRQDHELQALEAIYGSDFQDLRPDARGRVREPPEINLVLY-PQGLAGEEVYVQVELRVKCPPTYPDVVPEIDLKN   86 (137)
T ss_dssp             HHHHHHHHHHHHHHHTSSSEEECCCCCSSSCCCCCCEEEEEC-CTTSCSSSCSCEEEEEECCCTTTTSSCCCCEEEE
T ss_pred             hHHHHHHHHHHHHHHCcccceeccCcccCccCCCcEEEEEEe-cCCcCCcccceEEEEEEECCCCCCCCCCcEEEec
Confidence            445677899888875555555432211     1345666665 321 100 12368899999999999999998755

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	332
d2f4wa1	157	d.20.1.1 (A:12-168) Ubiquitin conjugating enzyme,	8e-29
d2a4da1	139	d.20.1.1 (A:82-220) Ubiquitin conjugating enzyme,	7e-23
d1jatb_	136	d.20.1.1 (B:) Ubiquitin conjugating enzyme, UBC {B	2e-22
d2a7la1	117	d.20.1.1 (A:1-117) Ubiquitin-protein ligase W (E2	1e-20
d1z3da1	149	d.20.1.1 (A:2-150) Ubiquitin conjugating enzyme, U	2e-20
d2fo3a1	109	d.20.1.1 (A:9-117) Putative ubiquitin-conjugating	2e-20
d1ayza_	153	d.20.1.1 (A:) Ubiquitin conjugating enzyme, UBC {B	3e-20
d2awfa1	125	d.20.1.1 (A:7-131) Ubiquitin conjugating enzyme, U	6e-20
d1z2ua1	147	d.20.1.1 (A:1-147) Ubiquitin conjugating enzyme, U	3e-19
d1c4zd_	144	d.20.1.1 (D:) Ubiquitin conjugating enzyme, UBC {H	1e-18
d2uyza1	156	d.20.1.1 (A:3-158) Ubiquitin conjugating enzyme, U	5e-18
d2e2ca_	156	d.20.1.1 (A:) Ubiquitin conjugating enzyme, UBC {C	9e-18
d1y6la_	148	d.20.1.1 (A:) Ubiquitin conjugating enzyme, UBC {H	1e-17
d1yrva1	148	d.20.1.1 (A:1-148) Ubiquitin conjugating enzyme, U	3e-17
d1yh2a1	154	d.20.1.1 (A:1-154) Ubiquitin conjugating enzyme, U	6e-17
d1pzva_	161	d.20.1.1 (A:) Ubiquitin conjugating enzyme, UBC {N	1e-16
d1i7ka_	146	d.20.1.1 (A:) Ubiquitin conjugating enzyme, UBC {H	5e-16
d2ucza_	164	d.20.1.1 (A:) Ubiquitin conjugating enzyme, UBC {B	5e-16
d1zuoa1	162	d.20.1.1 (A:201-362) Ubiquitin-conjugating enzyme	7e-16
d1s1qa_	141	d.20.1.2 (A:) Tumor susceptibility gene 101 (TSG10	9e-16
d1zdna1	151	d.20.1.1 (A:6-156) Ubiquitin conjugating enzyme, U	2e-15
d1jata_	152	d.20.1.1 (A:) Ubiquitin conjugating enzyme, UBC {B	3e-15
d2z5da1	152	d.20.1.1 (A:23-174) Ubiquitin conjugating enzyme,	3e-15
d1yf9a1	158	d.20.1.1 (A:13-170) Ubiquitin conjugating enzyme,	3e-15
d1fzya_	149	d.20.1.1 (A:) Ubiquitin conjugating enzyme, UBC {B	4e-15
d2bepa1	154	d.20.1.1 (A:1-154) Ubiquitin-conjugating enzyme E2	7e-15
d1j7db_	149	d.20.1.1 (B:) Ubiquitin conjugating enzyme, UBC {H	7e-15
d2f4za1	161	d.20.1.1 (A:32-192) Hypothetical protein Tgtwinsca	3e-14
d1y8xa1	157	d.20.1.1 (A:27-183) Ubiquitin conjugating enzyme,	4e-14
d1wzva1	150	d.20.1.1 (A:2-151) Ubiquitin conjugating enzyme, U	3e-11
d1uzxa_	152	d.20.1.2 (A:) Vacuolar protein sorting-associated	1e-05

>d2f4wa1 d.20.1.1 (A:12-168) Ubiquitin conjugating enzyme, UBC {Human (Homo sapiens), E2 J2 [TaxId: 9606]} Length = 157

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin conjugating enzyme, UBC
species: Human (Homo sapiens), E2 J2 [TaxId: 9606]

 Score =  106 bits (266), Expect = 8e-29
 Identities = 58/168 (34%), Positives = 87/168 (51%), Gaps = 32/168 (19%)

Query: 12  AVKRILQEVKEMQSNPSDDFMSLPLEENIFEWQFAIRGPGDTEFEGGIYHGRIQLPAEYP 71
           A +R+ Q+   ++ +P     + PL  NI EW + +RGP  T +EGG YHG++  P E+P
Sbjct: 2   ATQRLKQDYLRIKKDPVPYICAEPLPSNILEWHYVVRGPEMTPYEGGYYHGKLIFPREFP 61

Query: 72  FKPPSFMLLTVRCCSLMEHKSYCLCADYGVRTNVCAFFPPQPNGRFETQTKICLSISNHH 131
           FKPPS  ++T                               PNGRF+  T++CLSI++ H
Sbjct: 62  FKPPSIYMIT-------------------------------PNGRFKCNTRLCLSITDFH 90

Query: 132 PEHWQPSWSVRTALVALIAFMPTNPNGALGSLDYKKEERRALAIKSRE 179
           P+ W P+WSV T L  L++FM       LGS++     +R LA++S  
Sbjct: 91  PDTWNPAWSVSTILTGLLSFM-VEKGPTLGSIETSDFTKRQLAVQSLA 137

>d2a4da1 d.20.1.1 (A:82-220) Ubiquitin conjugating enzyme, UBC {Human (Homo sapiens), E2 variant 1 [TaxId: 9606]} Length = 139

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin conjugating enzyme, UBC
species: Human (Homo sapiens), E2 variant 1 [TaxId: 9606]

 Score = 90.4 bits (224), Expect = 7e-23
 Identities = 33/151 (21%), Positives = 55/151 (36%), Gaps = 33/151 (21%)

Query: 11  PAVKRILQEVKEMQSNPSDDFMSLPLEE----NIFEWQFAIRGPGDTEFEGGIYHGRIQL 66
           P   R+L+E++E Q    D  +S  LE+     +  W   I GP  T +E  IY  +I+ 
Sbjct: 5   PRNFRLLEELEEGQKGVGDGTVSWGLEDDEDMTLTRWTGMIIGPPRTIYENRIYSLKIEC 64

Query: 67  PAEYPFKPPSFMLLTVRCCSLMEHKSYCLCADYGVRTNVCAFFPPQPNGRFETQTKICLS 126
             +YP  PP    +T    + +   +  +                             +S
Sbjct: 65  GPKYPEAPPFVRFVTKINMNGVNSSNGVVD-------------------------PRAIS 99

Query: 127 ISNHHPEHWQPSWSVRTALVALIAFMPTNPN 157
           +       WQ S+S++  L  L   M +  N
Sbjct: 100 V----LAKWQNSYSIKVVLQELRRLMMSKEN 126

>d1jatb_ d.20.1.1 (B:) Ubiquitin conjugating enzyme, UBC {Baker's yeast (Saccharomyces cerevisiae), mms2 [TaxId: 4932]} Length = 136

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin conjugating enzyme, UBC
species: Baker's yeast (Saccharomyces cerevisiae), mms2 [TaxId: 4932]

 Score = 89.3 bits (221), Expect = 2e-22
 Identities = 27/153 (17%), Positives = 48/153 (31%), Gaps = 35/153 (22%)

Query: 9   KNPAVKRILQEVKEMQSNPSDDFMSLPLEE----NIFEWQFAIRGPGDTEFEGGIYHGRI 64
           K P   R+L+E+++ +     +  S  L +     + +W   I GP  +  E  IY   I
Sbjct: 2   KVPRNFRLLEELEKGEKGFGPESCSYGLADSDDITMTKWNGTILGPPHSNHENRIYSLSI 61

Query: 65  QLPAEYPFKPPSFMLLTVRCCSLMEHKSYCLCADYGVRTNVCAFFPPQPNGRFETQTKIC 124
                YP  PP    ++                                     T  ++ 
Sbjct: 62  DCGPNYPDSPPKVTFISKINL----------------------------PCVNPTTGEVQ 93

Query: 125 LSISNHHPEHWQPSWSVRTALVALIAFMPTNPN 157
                H    W+ ++++ T L+ L   M   P 
Sbjct: 94  TDF--HTLRDWKRAYTMETLLLDLRKEM-ATPA 123

>d2a7la1 d.20.1.1 (A:1-117) Ubiquitin-protein ligase W (E2 W) {Human (Homo sapiens) [TaxId: 9606]} Length = 117

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin-protein ligase W (E2 W)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 83.9 bits (207), Expect = 1e-20
 Identities = 27/143 (18%), Positives = 52/143 (36%), Gaps = 32/143 (22%)

Query: 12  AVKRILQEVKEMQSNPSDDFM--SLPLEENIFEWQFAIRGPGDTEFEGGIYHGRIQLPAE 69
             KR+ +E+  +Q++P          ++ +I +W   + G   T +EG  +    +  + 
Sbjct: 4   MQKRLQKELLALQNDPPPGMTLNEKSVQNSITQWIVDMEGAPGTLYEGEKFQLLFKFSSR 63

Query: 70  YPFKPPSFMLLTVRCCSLMEHKSYCLCADYGVRTNVCAFFPPQPNGRFETQTKICLSISN 129
           YPF  P  M                                   +    +   ICLSI  
Sbjct: 64  YPFDSPQVMFTGENIP---------------------------VHPHVYSNGHICLSILT 96

Query: 130 HHPEHWQPSWSVRTALVALIAFM 152
              E W P+ SV++  +++I+ +
Sbjct: 97  ---EDWSPALSVQSVCLSIISML 116

>d1z3da1 d.20.1.1 (A:2-150) Ubiquitin conjugating enzyme, UBC {Nematode (Caenorhabditis elegans), E2-21.5 kDa [TaxId: 6239]} Length = 149

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin conjugating enzyme, UBC
species: Nematode (Caenorhabditis elegans), E2-21.5 kDa [TaxId: 6239]

 Score = 84.0 bits (207), Expect = 2e-20
 Identities = 38/172 (22%), Positives = 67/172 (38%), Gaps = 35/172 (20%)

Query: 11  PAVKRILQEVKEMQSNPSDDFMSLPLEENIFEWQFAIRGPGDTEFEGGIYHGRIQLPAEY 70
           P+ +R++++ K++Q +P       P E+NI  W+  I GP +T FE G +   ++   EY
Sbjct: 3   PSRRRLMRDFKKLQEDPPAGVSGAPTEDNILTWEAIIFGPQETPFEDGTFKLSLEFTEEY 62

Query: 71  PFKPPSFMLLTVRCCSLMEHKSYCLCADYGVRTNVCAFFPPQPNGRFETQTKICLSISNH 130
           P KPP+   ++                                         ICL     
Sbjct: 63  PNKPPTVKFISKMFHP-----------------------------NVYADGSICLD---I 90

Query: 131 HPEHWQPSWSVRTALVALIAFMPT-NPNGALGSLDYK--KEERRALAIKSRE 179
               W P++ V   L ++ + +   NPN    SL  +  +E RR    + ++
Sbjct: 91  LQNRWSPTYDVAAILTSIQSLLDEPNPNSPANSLAAQLYQENRREYEKRVQQ 142

>d2fo3a1 d.20.1.1 (A:9-117) Putative ubiquitin-conjugating enzyme, E2 domain {Plasmodium chabaudi [TaxId: 5825]} Length = 109

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Putative ubiquitin-conjugating enzyme, E2 domain
species: Plasmodium chabaudi [TaxId: 5825]

 Score = 82.8 bits (204), Expect = 2e-20
 Identities = 28/138 (20%), Positives = 49/138 (35%), Gaps = 31/138 (22%)

Query: 15  RILQEVKEMQSNPSDDFMSLPLEENIFEWQFAIRGPGDTEFEGGIYHGRIQLPAEYPFKP 74
           RI +E+    +NP  +        NI  W     G  +T +   +Y  +I  P +YP KP
Sbjct: 2   RIQKELHNFLNNPPINCTLDVHPNNIRIWIVKYVGLENTIYANEVYKLKIIFPDDYPLKP 61

Query: 75  PSFMLLTVRCCSLMEHKSYCLCADYGVRTNVCAFFPPQPNGRFETQTKICLSISNHHPEH 134
           P    L                              P  +    +   ICLS+     + 
Sbjct: 62  PIVYFLQ----------------------------KPPKHTHVYSNGDICLSLLG---DD 90

Query: 135 WQPSWSVRTALVALIAFM 152
           + PS S+   ++++I+ +
Sbjct: 91  YNPSLSISGLVLSIISML 108

>d1ayza_ d.20.1.1 (A:) Ubiquitin conjugating enzyme, UBC {Baker's yeast (Saccharomyces cerevisiae), ubc2 (RAD6) [TaxId: 4932]} Length = 153

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin conjugating enzyme, UBC
species: Baker's yeast (Saccharomyces cerevisiae), ubc2 (RAD6) [TaxId: 4932]

 Score = 83.6 bits (206), Expect = 3e-20
 Identities = 35/176 (19%), Positives = 62/176 (35%), Gaps = 35/176 (19%)

Query: 11  PAVKRILQEVKEMQSNPSDDFMSLPLEENIFEWQFAIRGPGDTEFEGGIYHGRIQLPAEY 70
           PA +R++++ K M+ +      + PL +N+  W   I GP DT +E G +   ++   EY
Sbjct: 3   PARRRLMRDFKRMKEDAPPGVSASPLPDNVMVWNAMIIGPADTPYEDGTFRLLLEFDEEY 62

Query: 71  PFKPPSFMLLTVRCCSLMEHKSYCLCADYGVRTNVCAFFPPQPNGRFETQTKICLSISNH 130
           P KPP    L+                                +       +ICL     
Sbjct: 63  PNKPPHVKFLS-----------------------------EMFHPNVYANGEICLD---I 90

Query: 131 HPEHWQPSWSVRTALVALIAFMPT-NPNGALGSLDYK--KEERRALAIKSREAAPK 183
               W P++ V + L ++ +     NP            K+ +     + +E   K
Sbjct: 91  LQNRWTPTYDVASILTSIQSLFNDPNPASPANVEAATLFKDHKSQYVKRVKETVEK 146

>d2awfa1 d.20.1.1 (A:7-131) Ubiquitin conjugating enzyme, UBC {Human (Homo sapiens), E2 G1 [TaxId: 9606]} Length = 125

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin conjugating enzyme, UBC
species: Human (Homo sapiens), E2 G1 [TaxId: 9606]

 Score = 82.0 bits (202), Expect = 6e-20
 Identities = 28/149 (18%), Positives = 61/149 (40%), Gaps = 40/149 (26%)

Query: 15  RILQEVKEMQSNPSDDFMSLPLEE-NIFEWQFAIRGPGDTEFEGGIYHGRIQLPAEYPFK 73
            + +++ E+  NP + F +  +++ +++ W+  I GP DT +EGG++   +  P +YP +
Sbjct: 3   LLRRQLAELNKNPVEGFSAGLIDDNDLYRWEVLIIGPPDTLYEGGVFKAHLTFPKDYPLR 62

Query: 74  PPSFMLLTVRCCSLMEHKSYCLCADYGVRTNVCAFFPPQPNGRFETQTKICLSISNH--- 130
           PP    +T                                +   +    +C+SI +    
Sbjct: 63  PPKMKFITEIW-----------------------------HPNVDKNGDVCISILHEPGE 93

Query: 131 -------HPEHWQPSWSVRTALVALIAFM 152
                    E W P  +V T ++++I+ +
Sbjct: 94  DKYGYEKPEERWLPIHTVETIMISVISML 122

>d1z2ua1 d.20.1.1 (A:1-147) Ubiquitin conjugating enzyme, UBC {Caenorhabditis elegans, E2 2 [TaxId: 6239]} Length = 147

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin conjugating enzyme, UBC
species: Caenorhabditis elegans, E2 2 [TaxId: 6239]

 Score = 81.0 bits (199), Expect = 3e-19
 Identities = 35/173 (20%), Positives = 64/173 (36%), Gaps = 29/173 (16%)

Query: 12  AVKRILQEVKEMQSNPSDDFMSLPLEENIFEWQFAIRGPGDTEFEGGIYHGRIQLPAEYP 71
           A+KRI +E++++  +P     + P+ +++F WQ  I GP ++ ++GG++   I  P +YP
Sbjct: 2   ALKRIQKELQDLGRDPPAQCSAGPVGDDLFHWQATIMGPPESPYQGGVFFLTIHFPTDYP 61

Query: 72  FKPPSFMLLTVRCCSLMEHKSYCLCADYGVRTNVCAFFPPQPNGRFETQTKICLSISNHH 131
           FKPP     T                                +    +   ICL I    
Sbjct: 62  FKPPKVAFTT-----------------------------RIYHPNINSNGSICLDILRSQ 92

Query: 132 PEHWQPSWSVRTALVALIAFMPTNPNGALGSLDYKKEERRALAIKSREAAPKF 184
                    V  ++ +L+     +           K +R      +RE   K+
Sbjct: 93  WSPALTISKVLLSICSLLCDPNPDDPLVPEIARIYKTDRERYNQLAREWTQKY 145

>d1c4zd_ d.20.1.1 (D:) Ubiquitin conjugating enzyme, UBC {Human (Homo sapiens), ubch7 [TaxId: 9606]} Length = 144

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin conjugating enzyme, UBC
species: Human (Homo sapiens), ubch7 [TaxId: 9606]

 Score = 79.0 bits (194), Expect = 1e-18
 Identities = 38/176 (21%), Positives = 74/176 (42%), Gaps = 38/176 (21%)

Query: 14  KRILQEVKEMQSNPSDDFMSLPL-EENIFEWQFAIRGPGDTEFEGGIYHGRIQLPAEYPF 72
           +R+++E++E++     +F ++ + E N+  WQ  I  P +  ++ G +   I  PAEYPF
Sbjct: 2   RRLMKELEEIRKCGMKNFRNIQVDEANLLTWQGLI-VPDNPPYDKGAFRIEINFPAEYPF 60

Query: 73  KPPSFMLLTVRCCSLMEHKSYCLCADYGVRTNVCAFFPPQPNGRFETQTKICLSISNHHP 132
           KPP     T                                +   + + ++CL +     
Sbjct: 61  KPPKITFKT-----------------------------KIYHPNIDEKGQVCLPV--ISA 89

Query: 133 EHWQPSWSVRTALVALIAFM----PTNPNGALGSLDYKKEERRALAIKSREAAPKF 184
           E+W+P+      + +LIA +    P +P  A  + +Y K +R+     + E   K+
Sbjct: 90  ENWKPATKTDQVIQSLIALVNDPQPEHPLRADLAEEYSK-DRKKFCKNAEEFTKKY 144

>d2uyza1 d.20.1.1 (A:3-158) Ubiquitin conjugating enzyme, UBC {Human (Homo sapiens), ubc9 [TaxId: 9606]} Length = 156

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin conjugating enzyme, UBC
species: Human (Homo sapiens), ubc9 [TaxId: 9606]

 Score = 77.5 bits (190), Expect = 5e-18
 Identities = 36/181 (19%), Positives = 65/181 (35%), Gaps = 38/181 (20%)

Query: 12  AVKRILQEVKEMQSNPSDDFMSLPLEE-----NIFEWQFAIRGPGDTEFEGGIYHGRIQL 66
           A+ R+ QE K  + +    F+++P +      N+  W+ AI G   T +EGG++  R+  
Sbjct: 3   ALSRLAQERKAWRKDHPFGFVAVPTKNPDGTMNLMNWECAIPGKKGTPWEGGLFKLRMLF 62

Query: 67  PAEYPFKPPSFMLLTVRCCSLMEHKSYCLCADYGVRTNVCAFFPPQPNGRFETQTKICLS 126
             +YP  PP                                  PP  +        + LS
Sbjct: 63  KDDYPSSPPKCKFE-----------------------------PPLFHPNVYPSGTVSLS 93

Query: 127 ISNHHPEHWQPSWSVRTALVALIAFMPT-NPNGALGSLDYK--KEERRALAIKSREAAPK 183
           I     + W+P+ +++  L+ +   +   N      +  Y    + R     + R  A K
Sbjct: 94  IL-EEDKDWRPAITIKQILLGIQELLNEPNIQDPAQAEAYTIYCQNRVEYEKRVRAQAKK 152

Query: 184 F 184
           F
Sbjct: 153 F 153

>d2e2ca_ d.20.1.1 (A:) Ubiquitin conjugating enzyme, UBC {Clam (Spisula solidissima), E-2C [TaxId: 6584]} Length = 156

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin conjugating enzyme, UBC
species: Clam (Spisula solidissima), E-2C [TaxId: 6584]

 Score = 77.1 bits (189), Expect = 9e-18
 Identities = 34/149 (22%), Positives = 60/149 (40%), Gaps = 33/149 (22%)

Query: 9   KNPAVKRILQEVKEMQSNPSDDFMSLPLEENIFEWQFAIRGPGDTEFEGGIYHGRIQLPA 68
           ++   KR+ QE++ +  +      + P  +N+F+W   + GP DT +E   Y   ++ P+
Sbjct: 7   RHSVSKRLQQELRTLLMSGDPGITAFPDGDNLFKWVATLDGPKDTVYESLKYKLTLEFPS 66

Query: 69  EYPFKPPSFMLLTVRCCSLMEHKSYCLCADYGVRTNVCAFFPPQPNGRFETQTKICLSIS 128
           +YP+KPP     T                                +   +    ICL   
Sbjct: 67  DYPYKPPVVKFTTPCW-----------------------------HPNVDQSGNICLD-- 95

Query: 129 NHHPEHWQPSWSVRTALVALIAFMPTNPN 157
               E+W  S+ VRT L++L + +   PN
Sbjct: 96  -ILKENWTASYDVRTILLSLQSLL-GEPN 122

>d1y6la_ d.20.1.1 (A:) Ubiquitin conjugating enzyme, UBC {Human (Homo sapiens), ubch8 [TaxId: 9606]} Length = 148

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin conjugating enzyme, UBC
species: Human (Homo sapiens), ubch8 [TaxId: 9606]

 Score = 76.4 bits (187), Expect = 1e-17
 Identities = 39/180 (21%), Positives = 71/180 (39%), Gaps = 35/180 (19%)

Query: 10  NPAVKRILQEVKEMQSNPSDDFMSLPLEENIFEWQFAIRGPGDTEFEGGIYHGRIQLPAE 69
           + + KRI +E+ E+  +P  +  + P  +NI+EW+  I GP  + +EGG++   I    +
Sbjct: 1   STSAKRIQKELAEITLDPPPNCSAGPKGDNIYEWRSTILGPPGSVYEGGVFFLDITFSPD 60

Query: 70  YPFKPPSFMLLTVRCCSLMEHKSYCLCADYGVRTNVCAFFPPQPNGRFETQTKICLSISN 129
           YPFKPP     T                                +    +Q  ICL I  
Sbjct: 61  YPFKPPKVTFRT-----------------------------RIYHCNINSQGVICLDI-- 89

Query: 130 HHPEHWQPSWSVRTALVALIAFMPT-NPNGALGSLDYK--KEERRALAIKSREAAPKFGT 186
              ++W P+ ++   L+++ + +   NP   L           R      +R+   ++ T
Sbjct: 90  -LKDNWSPALTISKVLLSICSLLTDCNPADPLVGSIATQYMTNRAEHDRMARQWTKRYAT 148

>d1yrva1 d.20.1.1 (A:1-148) Ubiquitin conjugating enzyme, UBC {Human (Homo sapiens), E2 U [TaxId: 9606]} Length = 148

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin conjugating enzyme, UBC
species: Human (Homo sapiens), E2 U [TaxId: 9606]

 Score = 75.2 bits (184), Expect = 3e-17
 Identities = 25/148 (16%), Positives = 59/148 (39%), Gaps = 30/148 (20%)

Query: 10  NPAVKRILQEVKEMQSNPSDDFMSLPLEENIFEWQFAIRGPGDTEFEGGIYHGRIQLPAE 69
             A   + ++  +++ N      + P+ E++ EW+  I G  ++ ++G ++   I   +E
Sbjct: 3   GRAYLLLHRDFCDLKENNYKGITAKPVSEDMMEWEVEIEGLQNSVWQGLVFQLTIHFTSE 62

Query: 70  YPFKPPSFMLLTVRCCSLMEHKSYCLCADYGVRTNVCAFFPPQPNGRFETQTKICLSISN 129
           Y + PP    +T+     ++  +   C D+                              
Sbjct: 63  YNYAPPVVKFITIPFHPNVDPHTGQPCIDF-----------------------------L 93

Query: 130 HHPEHWQPSWSVRTALVALIAFMPTNPN 157
            +PE W  ++++ + L+AL   + +NP 
Sbjct: 94  DNPEKWNTNYTLSSILLALQVML-SNPV 120

>d1yh2a1 d.20.1.1 (A:1-154) Ubiquitin conjugating enzyme, UBC {Human (Homo sapiens), E2 T [TaxId: 9606]} Length = 154

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin conjugating enzyme, UBC
species: Human (Homo sapiens), E2 T [TaxId: 9606]

 Score = 74.9 bits (183), Expect = 6e-17
 Identities = 33/181 (18%), Positives = 66/181 (36%), Gaps = 33/181 (18%)

Query: 12  AVKRILQEVKEMQSNPSDDFMSLPLEENIFEWQFAIRGPGDTEFEGGIYHGRIQLPAEYP 71
              R+ +E+  + + P         ++ + + +  I G  +T +E G++   + +P  YP
Sbjct: 3   RASRLKRELHMLATEPPPGITCWQDKDQMDDLRAQILGGANTPYEKGVFKLEVIIPERYP 62

Query: 72  FKPPSFMLLTVRCCSLMEHKSYCLCADYGVRTNVCAFFPPQPNGRFETQTKICLSISNHH 131
           F+PP    LT                             P  +   ++  +ICL +    
Sbjct: 63  FEPPQIRFLT-----------------------------PIYHPNIDSAGRICLDVLKLP 93

Query: 132 PEHWQ-PSWSVRTALVALIAFMPT-NPNGALGSLDYK--KEERRALAIKSREAAPKFGTP 187
           P+    PS ++ T L ++   M   NP+  L +      K  + A    +R+   K    
Sbjct: 94  PKGAWRPSLNIATVLTSIQLLMSEPNPDDPLMADISSEFKYNKPAFLKNARQWTEKHARQ 153

Query: 188 E 188
           +
Sbjct: 154 K 154

>d1pzva_ d.20.1.1 (A:) Ubiquitin conjugating enzyme, UBC {Nematode (Caenorhabditis elegans), E2-19 kDa [TaxId: 6239]} Length = 161

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin conjugating enzyme, UBC
species: Nematode (Caenorhabditis elegans), E2-19 kDa [TaxId: 6239]

 Score = 74.0 bits (181), Expect = 1e-16
 Identities = 32/171 (18%), Positives = 71/171 (41%), Gaps = 30/171 (17%)

Query: 12  AVKRILQEVKEMQSNPSDDFMSLPLEE-NIFEWQFAIRGPGDTEFEGGIYHGRIQLPAEY 70
           +   + +++ +M+  P D F +  +++ +I++W+  + GP DT +EGG +   +  P +Y
Sbjct: 1   SSLLLKKQLADMRRVPVDGFSAGLVDDNDIYKWEVLVIGPPDTLYEGGFFKAILDFPRDY 60

Query: 71  PFKPPSFMLLTVRCCSLMEHKSYCLCADYGVRTNVCAFFPPQPNGRFETQTKICLSISNH 130
           P KPP    ++         + +    D      +     P  +                
Sbjct: 61  PQKPPKMKFIS---------EIWHPNIDKEGNVCISILHDPGDDKWG----------YER 101

Query: 131 HPEHWQPSWSVRTALVALIAFMPTNPN---------GALGSLDYKKEERRA 172
             E W P  +V T L+++I+ + T+PN           +   +Y + +++ 
Sbjct: 102 PEERWLPVHTVETILLSVISML-TDPNFESPANVDAAKMQRENYAEFKKKV 151

>d1i7ka_ d.20.1.1 (A:) Ubiquitin conjugating enzyme, UBC {Human (Homo sapiens), ubch10 [TaxId: 9606]} Length = 146

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin conjugating enzyme, UBC
species: Human (Homo sapiens), ubch10 [TaxId: 9606]

 Score = 72.1 bits (176), Expect = 5e-16
 Identities = 34/147 (23%), Positives = 56/147 (38%), Gaps = 33/147 (22%)

Query: 11  PAVKRILQEVKEMQSNPSDDFMSLPLEENIFEWQFAIRGPGDTEFEGGIYHGRIQLPAEY 70
           P  KR+ QE+  +  +      + P  +N+F+W   I G   T +E   Y   ++ P+ Y
Sbjct: 1   PVGKRLQQELMTLMMSGDKGISAFPESDNLFKWVGTIHGAAGTVYEDLRYKLSLEFPSGY 60

Query: 71  PFKPPSFMLLTVRCCSLMEHKSYCLCADYGVRTNVCAFFPPQPNGRFETQTKICLSISNH 130
           P+  P+   LT                             P  +   +TQ  I L I   
Sbjct: 61  PYNAPTVKFLT-----------------------------PCYHPNVDTQGNISLDI--- 88

Query: 131 HPEHWQPSWSVRTALVALIAFMPTNPN 157
             E W   + VRT L+++ + +   PN
Sbjct: 89  LKEKWSALYDVRTILLSIQSLL-GEPN 114

>d2ucza_ d.20.1.1 (A:) Ubiquitin conjugating enzyme, UBC {Baker's yeast (Saccharomyces cerevisiae), ubc7 [TaxId: 4932]} Length = 164

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin conjugating enzyme, UBC
species: Baker's yeast (Saccharomyces cerevisiae), ubc7 [TaxId: 4932]

 Score = 72.5 bits (177), Expect = 5e-16
 Identities = 38/183 (20%), Positives = 70/183 (38%), Gaps = 50/183 (27%)

Query: 10  NPAVKRILQEVKEMQSNPSDDFMSLPL-EENIFEWQFAIRGPGDTEFEGGIYHGRIQLPA 68
             A KR+L+E++++  +     ++ P  E NIF W   I+GP DT +  G+++ +++ P 
Sbjct: 2   KTAQKRLLKELQQLIKDSPPGIVAGPKSENNIFIWDCLIQGPPDTPYADGVFNAKLEFPK 61

Query: 69  EYPFKPPSFMLLTVRCCSLMEHKSYCLCADYGVRTNVCAFFPPQPNGRFETQTKICLSI- 127
           +YP  PP                                F P   +       ++C+SI 
Sbjct: 62  DYPLSPPKLT-----------------------------FTPSILHPNIYPNGEVCISIL 92

Query: 128 ---------SNHHPEHWQPSWSVRTALVALIAFMPTNPN---------GALGSLDYKKEE 169
                         E W P  SV   L+++++ + + PN           L   +  + E
Sbjct: 93  HSPGDDPNMYELAEERWSPVQSVEKILLSVMSML-SEPNIESGANIDACILWRDNRPEFE 151

Query: 170 RRA 172
           R+ 
Sbjct: 152 RQV 154

>d1zuoa1 d.20.1.1 (A:201-362) Ubiquitin-conjugating enzyme E2 Q2, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 162

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin-conjugating enzyme E2 Q2, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 71.8 bits (175), Expect = 7e-16
 Identities = 16/180 (8%), Positives = 51/180 (28%), Gaps = 48/180 (26%)

Query: 11  PAVKRILQEVKEMQSNPSDD---FMSLPLEENIFEWQFAIRG-PGDTEFEGGI------- 59
            A  R+++E++++  + S     +    + +++++W   ++    D+     +       
Sbjct: 4   QASDRLMKELRDIYRSQSYKTGIYSVELINDSLYDWHVKLQKVDPDSPLHSDLQILKEKE 63

Query: 60  ----YHGRIQLPAEYPFKPPSFMLLTVRCCSLMEHKSYCLCADYGVRTNVCAFFPPQPNG 115
                         +PF PP   ++                                  G
Sbjct: 64  GIEYILLNFSFKDNFPFDPPFVRVVLPVLS----------------------------GG 95

Query: 116 RFETQTKICLSISNHHPEHWQPSWSVRTALVALIAFM---PTNPNGALGSLDYKKEERRA 172
                  +C+ +     + W  ++S+ + ++ + A +               Y     + 
Sbjct: 96  YVLGGGALCMEL--LTKQGWSSAYSIESVIMQINATLVKGKARVQFGANKNQYNLARAQQ 153

>d1s1qa_ d.20.1.2 (A:) Tumor susceptibility gene 101 (TSG101) {Human (Homo sapiens) [TaxId: 9606]} Length = 141

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UEV domain
domain: Tumor susceptibility gene 101 (TSG101)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 71.1 bits (174), Expect = 9e-16
 Identities = 20/157 (12%), Positives = 39/157 (24%), Gaps = 36/157 (22%)

Query: 5   RYNLKNPAVKRILQEVKEMQSNPSDDFMSLPLEENIFEWQFAIRGPGDTEFEGGIYHG-- 62
           +Y  ++    R    V  +  +      S    +        + G     + G  Y+   
Sbjct: 12  KYKYRD-LTVRETVNVITLYKDLKPVLDSYVFNDGSSRELMNLTGTIPVPYRGNTYNIPI 70

Query: 63  RIQLPAEYPFKPPSFMLLTVRCCSLMEHKSYCLCADYGVRTNVCAFFPPQPNGRFETQTK 122
            + L   YP+ PP                                F  P  +   +T   
Sbjct: 71  CLWLLDTYPYNPP------------------------------ICFVKPTSSMTIKTGKH 100

Query: 123 ICLSISNHHP---EHWQPSWSVRTALVALIAFMPTNP 156
           +  +   + P   E   P   +   +  +I      P
Sbjct: 101 VDANGKIYLPYLHEWKHPQSDLLGLIQVMIVVFGDEP 137

>d1zdna1 d.20.1.1 (A:6-156) Ubiquitin conjugating enzyme, UBC {Human(Homo sapiens), E2 S [TaxId: 9606]} Length = 151

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin conjugating enzyme, UBC
species: Human(Homo sapiens), E2 S [TaxId: 9606]

 Score = 70.5 bits (172), Expect = 2e-15
 Identities = 35/182 (19%), Positives = 62/182 (34%), Gaps = 35/182 (19%)

Query: 7   NLKNPAVKRILQEVKEMQSNPSDDFMSLPLEENIFEWQFAIRGPGDTEFEGGIYHGRIQL 66
           NL    ++ + +EV  + ++P D     P EE++ + Q  I GP  T + GG++  ++ L
Sbjct: 2   NLPPHIIRLVYKEVTTLTADPPDGIKVFPNEEDLTDLQVTIEGPEGTPYAGGLFRMKLLL 61

Query: 67  PAEYPFKPPSFMLLTVRCCSLMEHKSYCLCADYGVRTNVCAFFPPQPNGRFETQTKICLS 126
             ++P  PP    LT                                        +IC++
Sbjct: 62  GKDFPASPPKGYFLTKIFHP-----------------------------NVGANGEICVN 92

Query: 127 ISNHHPEHWQPSWSVRTALVALIAFMPT-NPNGALGSLDYK--KEERRALAIKSREAAPK 183
                   W     +R  L+ +   +   NP  AL     +   E     A ++R     
Sbjct: 93  ---VLKRDWTAELGIRHVLLTIKCLLIHPNPESALNEEAGRLLLENYEEYAARARLLTEI 149

Query: 184 FG 185
            G
Sbjct: 150 HG 151

>d1jata_ d.20.1.1 (A:) Ubiquitin conjugating enzyme, UBC {Baker's yeast (Saccharomyces cerevisiae), ubc13 [TaxId: 4932]} Length = 152

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin conjugating enzyme, UBC
species: Baker's yeast (Saccharomyces cerevisiae), ubc13 [TaxId: 4932]

 Score = 70.2 bits (171), Expect = 3e-15
 Identities = 36/178 (20%), Positives = 72/178 (40%), Gaps = 35/178 (19%)

Query: 14  KRILQEVKEMQSNPSDDFMSLPLEENIFEWQFAIRGPGDTEFEGGIYHGRIQLPAEYPFK 73
           KRI++E +++ S+P     + P ++N+  +Q  I GP  + +E GI+   + LP +YP +
Sbjct: 6   KRIIKETEKLVSDPVPGITAEPHDDNLRYFQVTIEGPEQSPYEDGIFELELYLPDDYPME 65

Query: 74  PPSFMLLTVRCCSLMEHKSYCLCADYGVRTNVCAFFPPQPNGRFETQTKICLSISNHHPE 133
            P    LT                      N+                ++     +    
Sbjct: 66  APKVRFLTKIYH-----------------PNID---------------RLGRICLDVLKT 93

Query: 134 HWQPSWSVRTALVALIAFMPT-NPNGALGSLDYK--KEERRALAIKSREAAPKFGTPE 188
           +W P+  +RT L+++ A + + NPN  L +   +   +  +    K+RE    +   +
Sbjct: 94  NWSPALQIRTVLLSIQALLASPNPNDPLANDVAEDWIKNEQGAKAKAREWTKLYAKKK 151

>d1yf9a1 d.20.1.1 (A:13-170) Ubiquitin conjugating enzyme, UBC {Leishmania major [TaxId: 5664]} Length = 158

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin conjugating enzyme, UBC
species: Leishmania major [TaxId: 5664]

 Score = 69.8 bits (170), Expect = 3e-15
 Identities = 29/189 (15%), Positives = 56/189 (29%), Gaps = 49/189 (25%)

Query: 12  AVKRILQEVKEMQSNPSDDFMSLPLEENIFEWQFAIRGPGDTEFEGGIYHGRIQLPAEYP 71
           + +R   +   + ++    + S    + + E+    +GP  T +E G +   +QLP++YP
Sbjct: 1   SNRRREMDYMRLCNSTRKVYPS----DTVAEFWVEFKGPEGTPYEDGTWMLHVQLPSDYP 56

Query: 72  FKPPSFMLLTVRCCSLMEHKSYCLCADYGVRTNVCAFFPPQPNGRFETQTKICLSISNHH 131
           FK PS                                    PN    + +       +  
Sbjct: 57  FKSPSIGFCNRILH---------------------------PNVDERSGSVCL----DVI 85

Query: 132 PEHWQPSWSVRTALVALIAFMPTNPN---------GALGSLDYKKEERRALAIKSREAAP 182
            + W P + +       +  +   PN           L   D    +        RE   
Sbjct: 86  NQTWTPMYQLENIFDVFLPQLLRYPNPSDPLNVQAAHLLHADRVGFDALL-----REHVS 140

Query: 183 KFGTPERQK 191
              TP++  
Sbjct: 141 THATPQKAL 149

>d1fzya_ d.20.1.1 (A:) Ubiquitin conjugating enzyme, UBC {Baker's yeast (Saccharomyces cerevisiae), ubc1 [TaxId: 4932]} Length = 149

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin conjugating enzyme, UBC
species: Baker's yeast (Saccharomyces cerevisiae), ubc1 [TaxId: 4932]

 Score = 69.4 bits (169), Expect = 4e-15
 Identities = 32/179 (17%), Positives = 64/179 (35%), Gaps = 35/179 (19%)

Query: 12  AVKRILQEVKEMQSNPSDDF-MSLPLEENIFEWQFAIRGPGDTEFEGGIYHGRIQLPAEY 70
             KRI++E++ ++ +P+    +    E +I   +    GP  T +EGG +   I++P EY
Sbjct: 2   RAKRIMKEIQAVKDDPAAHITLEFVSESDIHHLKGTFLGPPGTPYEGGKFVVDIEVPMEY 61

Query: 71  PFKPPSFMLLTVRCCSLMEHKSYCLCADYGVRTNVCAFFPPQPNGRFETQTKICLSISNH 130
           PFKPP     T                                       +       + 
Sbjct: 62  PFKPPKMQFDT-------------------------------KVYHPNISSVTGAICLDI 90

Query: 131 HPEHWQPSWSVRTALVALIAFMPT-NPNGALGSLDYK--KEERRALAIKSREAAPKFGT 186
               W P  ++++AL++L A + +  PN    +   +    +R +    +      + +
Sbjct: 91  LKNAWSPVITLKSALISLQALLQSPEPNDPQDAEVAQHYLRDRESFNKTAALWTRLYAS 149

>d2bepa1 d.20.1.1 (A:1-154) Ubiquitin-conjugating enzyme E2-25 kDa, E2 domain {Cow (Bos taurus) [TaxId: 9913]} Length = 154

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin-conjugating enzyme E2-25 kDa, E2 domain
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 69.1 bits (168), Expect = 7e-15
 Identities = 33/151 (21%), Positives = 53/151 (35%), Gaps = 35/151 (23%)

Query: 10  NPAVKRILQEVKEMQSNPSDDFMSL---PLEENIFEWQFAIRGPGDTEFEGGIYHGRIQL 66
           N AV+RI +E KE+  +       +    ++EN  E +  I GP DT +EGG Y   I++
Sbjct: 3   NIAVQRIKREFKEVLKSEETSKNQIKVDLVDENFTELRGEIAGPPDTPYEGGRYQLEIKI 62

Query: 67  PAEYPFKPPSFMLLTVRCCSLMEHKSYCLCADYGVRTNVCAFFPPQPNGRFETQTKICLS 126
           P  YPF PP                                             +     
Sbjct: 63  PETYPFNPPKVR-------------------------------FITKIWHPNISSVTGAI 91

Query: 127 ISNHHPEHWQPSWSVRTALVALIAFMPTNPN 157
             +   + W  + ++RT L++L A +     
Sbjct: 92  CLDILKDQWAAAMTLRTVLLSLQALL-AAAE 121

>d1j7db_ d.20.1.1 (B:) Ubiquitin conjugating enzyme, UBC {Human (Homo sapiens), ubc13 [TaxId: 9606]} Length = 149

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin conjugating enzyme, UBC
species: Human (Homo sapiens), ubc13 [TaxId: 9606]

 Score = 68.7 bits (167), Expect = 7e-15
 Identities = 34/144 (23%), Positives = 57/144 (39%), Gaps = 33/144 (22%)

Query: 14  KRILQEVKEMQSNPSDDFMSLPLEENIFEWQFAIRGPGDTEFEGGIYHGRIQLPAEYPFK 73
           +RI++E + + + P     + P E N   +   I GP D+ FEGG +   + LP EYP  
Sbjct: 5   RRIIKETQRLLAEPVPGIKAEPDESNARYFHVVIAGPQDSPFEGGTFKLELFLPEEYPMA 64

Query: 74  PPSFMLLTVRCCSLMEHKSYCLCADYGVRTNVCAFFPPQPNGRFETQTKICLSISNHHPE 133
            P    +T                                +   +   +ICL I     +
Sbjct: 65  APKVRFMT-----------------------------KIYHPNVDKLGRICLDI---LKD 92

Query: 134 HWQPSWSVRTALVALIAFMPTNPN 157
            W P+  +RT L+++ A + + PN
Sbjct: 93  KWSPALQIRTVLLSIQALL-SAPN 115

>d2f4za1 d.20.1.1 (A:32-192) Hypothetical protein Tgtwinscan_2721, E2 domain {Toxoplasma gondii [TaxId: 5811]} Length = 161

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Hypothetical protein Tgtwinscan 2721, E2 domain
species: Toxoplasma gondii [TaxId: 5811]

 Score = 67.1 bits (163), Expect = 3e-14
 Identities = 33/157 (21%), Positives = 57/157 (36%), Gaps = 45/157 (28%)

Query: 14  KRILQEVKEMQ-------------SNPSDDFMSLPLEENIFEWQFAIRGPGDTEFEGGIY 60
            R+L+E+ ++Q              + S    +  +  +I  W+  I GP  T +EGG +
Sbjct: 4   ARLLKELADIQQLQRAHDSEPAATHSTSHGVSAQIVGGDIHRWRGFIAGPLGTPYEGGHF 63

Query: 61  HGRIQLPAEYPFKPPSFMLLTVRCCSLMEHKSYCLCADYGVRTNVCAFFPPQPNGRFETQ 120
              I +P +YP+ PP    +T                                       
Sbjct: 64  TLDIVIPPDYPYNPPKMKFVT----------------------------KIWHPNISSQT 95

Query: 121 TKICLSISNHHPEHWQPSWSVRTALVALIAFMPTNPN 157
             ICL I       W P+ ++RTAL+++ A +  +P 
Sbjct: 96  GAICLDI---LKHEWSPALTIRTALLSIQAML-ADPV 128

>d1y8xa1 d.20.1.1 (A:27-183) Ubiquitin conjugating enzyme, UBC {Human (Homo sapiens), E2 M [TaxId: 9606]} Length = 157

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin conjugating enzyme, UBC
species: Human (Homo sapiens), E2 M [TaxId: 9606]

 Score = 66.6 bits (162), Expect = 4e-14
 Identities = 24/148 (16%), Positives = 51/148 (34%), Gaps = 35/148 (23%)

Query: 10  NPAVKRILQEVKEMQSNPSDDFMSLPLEENIFEWQFAIRGPGDTEFEGGIYHGRIQLPAE 69
           + A  RI +++ E+    + D  S    +++  ++  I  P +  ++ G +    ++   
Sbjct: 2   SAAQLRIQKDINELNLPKTCDI-SFSDPDDLLNFKLVI-CPDEGFYKSGKFVFSFKVGQG 59

Query: 70  YPFKPPSFMLLTVRCCSLMEHKSYCLCADYGVRTNVCAFFPPQPNGRFETQTKICLSISN 129
           YP  PP     T+                     N+              +  +CL+I  
Sbjct: 60  YPHDPPKVKCETMVYH-----------------PNID------------LEGNVCLNI-- 88

Query: 130 HHPEHWQPSWSVRTALVALIAFMPTNPN 157
              E W+P  ++ + +  L       PN
Sbjct: 89  -LREDWKPVLTINSIIYGLQYLF-LEPN 114

>d1wzva1 d.20.1.1 (A:2-151) Ubiquitin conjugating enzyme, UBC {Human (Homo sapiens), E2 L6 [TaxId: 9606]} Length = 150

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin conjugating enzyme, UBC
species: Human (Homo sapiens), E2 L6 [TaxId: 9606]

 Score = 58.6 bits (141), Expect = 3e-11
 Identities = 32/147 (21%), Positives = 53/147 (36%), Gaps = 34/147 (23%)

Query: 12  AVKRILQEVKEMQSNPSDDFMSLPLEE-NIFEWQFAIRGPGDTEFEGGIYHGRIQLPAEY 70
           A  R+++E++++Q  P     +L  ++ N+  W   +  P    +    ++ RI  P EY
Sbjct: 1   ASMRVVKELEDLQKKPPPYLRNLSSDDANVLVWHALL-LPDQPPYHLKAFNLRISFPPEY 59

Query: 71  PFKPPSFMLLTVRCCSLMEHKSYCLCADYGVRTNVCAFFPPQPNGRFETQTKICLSISNH 130
           PFKPP     T                                +   +   +ICL I   
Sbjct: 60  PFKPPMIKFTT-----------------------------KIYHPNVDENGQICLPI--I 88

Query: 131 HPEHWQPSWSVRTALVALIAFMPTNPN 157
             E+W+P       L AL   +   PN
Sbjct: 89  SSENWKPCTKTCQVLEALNVLV-NRPN 114

>d1uzxa_ d.20.1.2 (A:) Vacuolar protein sorting-associated {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 152

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UEV domain
domain: Vacuolar protein sorting-associated
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 42.3 bits (99), Expect = 1e-05
 Identities = 20/148 (13%), Positives = 44/148 (29%), Gaps = 28/148 (18%)

Query: 13  VKRILQEVKEMQSNPSDDFMSLPLEENIFEWQFAIRGPGDTEFEGGIYHG---RIQLPAE 69
              +L     ++  P     +    +   +   +I G   T  +G   H     + +P+ 
Sbjct: 28  SLALLDNFHSLR--PRTRVFTHS--DGTPQLLLSIYGTISTGEDGSSPHSIPVIMWVPSM 83

Query: 70  YPFKPPSFMLLTVRCCSLMEHKSYCLCADYGVRTNVCAFFPPQPNGRFETQTKICLSISN 129
           YP KPP   +                         + +  P Q     ++   I L I +
Sbjct: 84  YPVKPPFISINLEN----------------FDMNTISSSLPIQEY--IDSNGWIALPILH 125

Query: 130 HHPEHWQPSWSVRTALVALIAFMPTNPN 157
                   + ++   +  L++ +   P 
Sbjct: 126 ---CWDPAAMNLIMVVQELMSLLHEPPQ 150

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	332
d1y6la_	148	Ubiquitin conjugating enzyme, UBC {Human (Homo sap	100.0
d1zdna1	151	Ubiquitin conjugating enzyme, UBC {Human(Homo sapi	100.0
d1z2ua1	147	Ubiquitin conjugating enzyme, UBC {Caenorhabditis	100.0
d1yh2a1	154	Ubiquitin conjugating enzyme, UBC {Human (Homo sap	100.0
d1z3da1	149	Ubiquitin conjugating enzyme, UBC {Nematode (Caeno	100.0
d1ayza_	153	Ubiquitin conjugating enzyme, UBC {Baker's yeast (	100.0
d1j7db_	149	Ubiquitin conjugating enzyme, UBC {Human (Homo sap	100.0
d2bepa1	154	Ubiquitin-conjugating enzyme E2-25 kDa, E2 domain	100.0
d1jata_	152	Ubiquitin conjugating enzyme, UBC {Baker's yeast (	100.0
d2uyza1	156	Ubiquitin conjugating enzyme, UBC {Human (Homo sap	100.0
d2ucza_	164	Ubiquitin conjugating enzyme, UBC {Baker's yeast (	100.0
d1i7ka_	146	Ubiquitin conjugating enzyme, UBC {Human (Homo sap	100.0
d1fzya_	149	Ubiquitin conjugating enzyme, UBC {Baker's yeast (	100.0
d2e2ca_	156	Ubiquitin conjugating enzyme, UBC {Clam (Spisula s	100.0
d1wzva1	150	Ubiquitin conjugating enzyme, UBC {Human (Homo sap	100.0
d1yrva1	148	Ubiquitin conjugating enzyme, UBC {Human (Homo sap	100.0
d2f4za1	161	Hypothetical protein Tgtwinscan_2721, E2 domain {T	100.0
d1pzva_	161	Ubiquitin conjugating enzyme, UBC {Nematode (Caeno	100.0
d1c4zd_	144	Ubiquitin conjugating enzyme, UBC {Human (Homo sap	100.0
d2f4wa1	157	Ubiquitin conjugating enzyme, UBC {Human (Homo sap	100.0
d2a7la1	117	Ubiquitin-protein ligase W (E2 W) {Human (Homo sap	100.0
d1y8xa1	157	Ubiquitin conjugating enzyme, UBC {Human (Homo sap	100.0
d2fo3a1	109	Putative ubiquitin-conjugating enzyme, E2 domain {	100.0
d2z5da1	152	Ubiquitin conjugating enzyme, UBC {Human (Homo sap	99.98
d1yf9a1	158	Ubiquitin conjugating enzyme, UBC {Leishmania majo	99.97
d2awfa1	125	Ubiquitin conjugating enzyme, UBC {Human (Homo sap	99.97
d1zuoa1	162	Ubiquitin-conjugating enzyme E2 Q2, C-terminal dom	99.96
d2a4da1	139	Ubiquitin conjugating enzyme, UBC {Human (Homo sap	99.96
d1jatb_	136	Ubiquitin conjugating enzyme, UBC {Baker's yeast (	99.95
d1s1qa_	141	Tumor susceptibility gene 101 (TSG101) {Human (Hom	99.67
d1uzxa_	152	Vacuolar protein sorting-associated {Baker's yeast	99.55
d2in1a1	162	Ufm1-conjugating enzyme 1, UFC1 {Human (Homo sapie	95.8
d2daya1	115	E3 ubiquitin-protein ligase RNF25 {Human (Homo sap	93.39

>d1y6la_ d.20.1.1 (A:) Ubiquitin conjugating enzyme, UBC {Human (Homo sapiens), ubch8 [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin conjugating enzyme, UBC
species: Human (Homo sapiens), ubch8 [TaxId: 9606]

Probab=100.00  E-value=4e-39  Score=275.87  Aligned_cols=145  Identities=28%  Similarity=0.579  Sum_probs=135.1

Q ss_pred             hHHHHHHHHHHHHHhhCCCCCeEEecCCCCceEEEEEEeCCCCCCCCCCEEEEEEEcCCCCCCCCCcccccccccccccc
Q 020053           10 NPAVKRILQEVKEMQSNPSDDFMSLPLEENIFEWQFAIRGPGDTEFEGGIYHGRIQLPAEYPFKPPSFMLLTVRCCSLME   89 (332)
Q Consensus        10 ~~a~kRL~kEl~~l~~~p~~gi~v~p~ednl~~W~v~I~GP~dTpYeGGiF~l~I~fP~~YP~~PP~V~FlT~~~~~~i~   89 (332)
                      +.+.|||++|+++|+++++.|+++.+.++|++.|+++|.||.+|||+||+|+++|.||++||++||+|+|+|     +||
T Consensus         1 s~~~kRi~~E~~~l~~~~~~gi~~~~~~~n~~~w~~~i~gp~~t~y~gg~f~~~i~~p~~YP~~pP~v~f~t-----~i~   75 (148)
T d1y6la_           1 STSAKRIQKELAEITLDPPPNCSAGPKGDNIYEWRSTILGPPGSVYEGGVFFLDITFSPDYPFKPPKVTFRT-----RIY   75 (148)
T ss_dssp             CHHHHHHHHHHHHHHHSCCTTEEEEESSSCTTEEEEEEECCTTSTTTTCEEEEEEECCTTTTSSCCEEEESS-----CCC
T ss_pred             ChHHHHHHHHHHHHhhCCCCCEEEEECCcccceeceEEECCCCCCcCCCeEEEEEecCcccCCCCcEEEEeC-----CCc
Confidence            368999999999999999999999999999999999999999999999999999999999999999999999     888


Q ss_pred             ccccccccCCceeecccccCCCCCCccccCCCeEEeecCCCCCCCCCCCCCHHHHHHHHHHhCCC-CCCChhh--hhHhh
Q 020053           90 HKSYCLCADYGVRTNVCAFFPPQPNGRFETQTKICLSISNHHPEHWQPSWSVRTALVALIAFMPT-NPNGALG--SLDYK  166 (332)
Q Consensus        90 Hp~~~~~~~~~~~~n~~~~~h~~PNv~v~~~G~ICL~iL~~~~e~WsP~~ti~sVL~sI~~lL~~-nP~~~~~--a~~~~  166 (332)
                      |                      ||  |+.+|.|||+++.   +.|+|.+++++||++|+.+|.+ |++++.+  +++++
T Consensus        76 H----------------------Pn--v~~~G~iCl~~l~---~~W~p~~~l~~il~~i~~ll~~p~~~~p~n~~aa~~~  128 (148)
T d1y6la_          76 H----------------------CN--INSQGVICLDILK---DNWSPALTISKVLLSICSLLTDCNPADPLVGSIATQY  128 (148)
T ss_dssp             B----------------------TT--BCTTCBBCCGGGT---TTCCTTCCHHHHHHHHHHHHHSCCTTSCSSHHHHHHH
T ss_pred             C----------------------ce--ECCCCeEEEEecC---CcCCCcEeHHHHHHHHHHHHhCCCCcccccHHHHHHH
Confidence            8                      99  6789999999997   8999999999999999999954 5566654  67888


Q ss_pred             HHhHHHHHHHHHHHHhhhCC
Q 020053          167 KEERRALAIKSREAAPKFGT  186 (332)
Q Consensus       167 ~~dr~~y~~kare~~~kya~  186 (332)
                      ++|++.|.++||+|++|||+
T Consensus       129 ~~d~~~f~~~ar~~~~k~A~  148 (148)
T d1y6la_         129 MTNRAEHDRMARQWTKRYAT  148 (148)
T ss_dssp             HHCHHHHHHHHHHHHHHHCC
T ss_pred             HHCHHHHHHHHHHHHHHhCC
Confidence            89999999999999999985

>d1zdna1 d.20.1.1 (A:6-156) Ubiquitin conjugating enzyme, UBC {Human(Homo sapiens), E2 S [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin conjugating enzyme, UBC
species: Human(Homo sapiens), E2 S [TaxId: 9606]

Probab=100.00  E-value=3.9e-39  Score=277.92  Aligned_cols=148  Identities=26%  Similarity=0.517  Sum_probs=137.5

Q ss_pred             CCCChHHHHHHHHHHHHHhhCCCCCeEEecCCCCceEEEEEEeCCCCCCCCCCEEEEEEEcCCCCCCCCCcccccccccc
Q 020053            6 YNLKNPAVKRILQEVKEMQSNPSDDFMSLPLEENIFEWQFAIRGPGDTEFEGGIYHGRIQLPAEYPFKPPSFMLLTVRCC   85 (332)
Q Consensus         6 ~~m~~~a~kRL~kEl~~l~~~p~~gi~v~p~ednl~~W~v~I~GP~dTpYeGGiF~l~I~fP~~YP~~PP~V~FlT~~~~   85 (332)
                      .||++.++|||++||++|++++++|+.+.|.++|+++|+++|.||+||||+||+|+++|.||++||++||+|+|.|    
T Consensus         1 ~~~~~~~~kRl~kEl~~l~~~~~~gi~v~p~~~dl~~w~~~i~gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t----   76 (151)
T d1zdna1           1 ENLPPHIIRLVYKEVTTLTADPPDGIKVFPNEEDLTDLQVTIEGPEGTPYAGGLFRMKLLLGKDFPASPPKGYFLT----   76 (151)
T ss_dssp             CCSCHHHHHHHHHHHHHHHHSCCTTEEEEECSSCTTEEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCCEEEESS----
T ss_pred             CCCCHHHHHHHHHHHHHHHhCCCCCeEEEEcCcchheeEEEEecCCCcCccCCceeeeeecCCCCCCCCceeecCC----
Confidence            3789999999999999999999999999999999999999999999999999999999999999999999999999    


Q ss_pred             ccccccccccccCCceeecccccCCCCCCccccCCCeEEeecCCCCCCCCCCCCCHHHHHHHHHHhCCC-CCCChhh--h
Q 020053           86 SLMEHKSYCLCADYGVRTNVCAFFPPQPNGRFETQTKICLSISNHHPEHWQPSWSVRTALVALIAFMPT-NPNGALG--S  162 (332)
Q Consensus        86 ~~i~Hp~~~~~~~~~~~~n~~~~~h~~PNv~v~~~G~ICL~iL~~~~e~WsP~~ti~sVL~sI~~lL~~-nP~~~~~--a  162 (332)
                       +|||                      ||  |+.+|.||++++.   +.|+|+++|++||++|+++|.+ |++++++  +
T Consensus        77 -~i~H----------------------Pn--I~~~G~ic~~~l~---~~W~p~~~l~~il~~i~~~l~~p~~~~p~n~ea  128 (151)
T d1zdna1          77 -KIFH----------------------PN--VGANGEICVNVLK---RDWTAELGIRHVLLTIKCLLIHPNPESALNEEA  128 (151)
T ss_dssp             -CCCC----------------------TT--BCTTSBBCHHHHT---TTCCTTCCHHHHHHHHHHHHHSCCGGGCSSHHH
T ss_pred             -CCCC----------------------ce--ecCCCCccccccc---ccCCccccHHHHHHHHHHHHhCCCCCchhhHHH
Confidence             8888                      99  6789999999997   8999999999999999999954 4444444  5


Q ss_pred             hHhhHHhHHHHHHHHHHHHhhhC
Q 020053          163 LDYKKEERRALAIKSREAAPKFG  185 (332)
Q Consensus       163 ~~~~~~dr~~y~~kare~~~kya  185 (332)
                      ++++.+|++.|.++||+|+++||
T Consensus       129 a~~~~~~~~~f~~~ar~~~~~~g  151 (151)
T d1zdna1         129 GRLLLENYEEYAARARLLTEIHG  151 (151)
T ss_dssp             HHHHHHCHHHHHHHHHHHHHHHC
T ss_pred             HHHHHHCHHHHHHHHHHHHHhhC
Confidence            77888999999999999999996

>d1z2ua1 d.20.1.1 (A:1-147) Ubiquitin conjugating enzyme, UBC {Caenorhabditis elegans, E2 2 [TaxId: 6239]}

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin conjugating enzyme, UBC
species: Caenorhabditis elegans, E2 2 [TaxId: 6239]

Probab=100.00  E-value=9.3e-39  Score=272.42  Aligned_cols=144  Identities=29%  Similarity=0.653  Sum_probs=133.7

Q ss_pred             HHHHHHHHHHHHHhhCCCCCeEEecCCCCceEEEEEEeCCCCCCCCCCEEEEEEEcCCCCCCCCCccccccccccccccc
Q 020053           11 PAVKRILQEVKEMQSNPSDDFMSLPLEENIFEWQFAIRGPGDTEFEGGIYHGRIQLPAEYPFKPPSFMLLTVRCCSLMEH   90 (332)
Q Consensus        11 ~a~kRL~kEl~~l~~~p~~gi~v~p~ednl~~W~v~I~GP~dTpYeGGiF~l~I~fP~~YP~~PP~V~FlT~~~~~~i~H   90 (332)
                      .|+|||++|+++|+++++.||++.+.++|+++|+++|.||.+|||+||+|+++|.||++||++||+|+|.|     ++||
T Consensus         1 ~a~kRL~~E~~~l~~~~~~~i~~~~~~~n~~~w~~~i~gp~~t~y~gg~f~~~i~fp~~YP~~pP~v~f~t-----~i~H   75 (147)
T d1z2ua1           1 MALKRIQKELQDLGRDPPAQCSAGPVGDDLFHWQATIMGPPESPYQGGVFFLTIHFPTDYPFKPPKVAFTT-----RIYH   75 (147)
T ss_dssp             HHHHHHHHHHHHHHHSCCSSEEEEEETTEEEEEEEEEECCTTSTTTTCEEEEEEECCTTTTSSCCEEEESS-----CCCB
T ss_pred             CHHHHHHHHHHHHHhCCCCCeEEEECCCchhhhhheecCCCCCCcCCCceEEEEecCcCCCCCCceEEEec-----CCce
Confidence            37999999999999999999999999999999999999999999999999999999999999999999999     8888


Q ss_pred             cccccccCCceeecccccCCCCCCccccCCCeEEeecCCCCCCCCCCCCCHHHHHHHHHHhCCC-CCCChhh--hhHhhH
Q 020053           91 KSYCLCADYGVRTNVCAFFPPQPNGRFETQTKICLSISNHHPEHWQPSWSVRTALVALIAFMPT-NPNGALG--SLDYKK  167 (332)
Q Consensus        91 p~~~~~~~~~~~~n~~~~~h~~PNv~v~~~G~ICL~iL~~~~e~WsP~~ti~sVL~sI~~lL~~-nP~~~~~--a~~~~~  167 (332)
                                            ||  |+.+|+||+++++   +.|+|++++++||.+|+++|.+ +++++.+  ++.+++
T Consensus        76 ----------------------Pn--V~~~G~iCl~~l~---~~w~p~~~i~~Il~~i~~ll~~p~~~~~~n~ea~~~~~  128 (147)
T d1z2ua1          76 ----------------------PN--INSNGSICLDILR---SQWSPALTISKVLLSICSLLCDPNPDDPLVPEIARIYK  128 (147)
T ss_dssp             ----------------------TT--BCTTCBBCCGGGT---TTCCTTCCHHHHHHHHHHHHHSCCTTSCSCHHHHHHHH
T ss_pred             ----------------------ee--ECCCCCEeeehhc---ccCCCCCCHHHHHHHHHHHhccCCCCCcccHHHHHHHH
Confidence                                  99  6889999999998   7899999999999999999954 5555544  567888


Q ss_pred             HhHHHHHHHHHHHHhhhCC
Q 020053          168 EERRALAIKSREAAPKFGT  186 (332)
Q Consensus       168 ~dr~~y~~kare~~~kya~  186 (332)
                      +|+++|.+++|++++|||.
T Consensus       129 ~~~~~f~~~~~~~~~k~A~  147 (147)
T d1z2ua1         129 TDRERYNQLAREWTQKYAM  147 (147)
T ss_dssp             HCHHHHHHHHHHHHHHHCC
T ss_pred             HCHHHHHHHHHHHHHHhCC
Confidence            9999999999999999984

>d1yh2a1 d.20.1.1 (A:1-154) Ubiquitin conjugating enzyme, UBC {Human (Homo sapiens), E2 T [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin conjugating enzyme, UBC
species: Human (Homo sapiens), E2 T [TaxId: 9606]

Probab=100.00  E-value=2.4e-38  Score=272.01  Aligned_cols=148  Identities=24%  Similarity=0.490  Sum_probs=135.7

Q ss_pred             HHHHHHHHHHHHHhhCCCCCeEEecCCCCceEEEEEEeCCCCCCCCCCEEEEEEEcCCCCCCCCCccccccccccccccc
Q 020053           11 PAVKRILQEVKEMQSNPSDDFMSLPLEENIFEWQFAIRGPGDTEFEGGIYHGRIQLPAEYPFKPPSFMLLTVRCCSLMEH   90 (332)
Q Consensus        11 ~a~kRL~kEl~~l~~~p~~gi~v~p~ednl~~W~v~I~GP~dTpYeGGiF~l~I~fP~~YP~~PP~V~FlT~~~~~~i~H   90 (332)
                      ++.+||++|+++|+++++.||++.|.++|+++|+++|.||+||||+||+|+++|.||++||++||+|+|+|     ++||
T Consensus         2 ~~~~Rl~kE~~~l~~~~~~gi~~~p~~~~~~~w~~~I~Gp~~TpY~gg~f~~~i~~p~~YP~~pP~v~f~t-----~i~H   76 (154)
T d1yh2a1           2 QRASRLKRELHMLATEPPPGITCWQDKDQMDDLRAQILGGANTPYEKGVFKLEVIIPERYPFEPPQIRFLT-----PIYH   76 (154)
T ss_dssp             HHHHHHHHHHHHHHHSCCTTEEEEESSSCTTEEEEEEECCTTSTTTTCEEEEEEECCTTTTSSCCEEEESS-----CCCB
T ss_pred             cHHHHHHHHHHHHHHCcCCCEEEEECCcchhhhhceEeCCCCCCCCCCEEEEEEecCccccCCCceeeccC-----CCCc
Confidence            57899999999999999999999999999999999999999999999999999999999999999999999     8888


Q ss_pred             cccccccCCceeecccccCCCCCCccccCCCeEEeecCCCCC-CCCCCCCCHHHHHHHHHHhCCC-CCCChhh--hhHhh
Q 020053           91 KSYCLCADYGVRTNVCAFFPPQPNGRFETQTKICLSISNHHP-EHWQPSWSVRTALVALIAFMPT-NPNGALG--SLDYK  166 (332)
Q Consensus        91 p~~~~~~~~~~~~n~~~~~h~~PNv~v~~~G~ICL~iL~~~~-e~WsP~~ti~sVL~sI~~lL~~-nP~~~~~--a~~~~  166 (332)
                                            ||  |+.+|.||+++|+.+. +.|+|++++++||++|++||.+ +++++.+  ++.++
T Consensus        77 ----------------------Pn--V~~~g~icl~~l~~~~~~~w~p~~~i~~il~~i~~ll~~p~~~~p~n~eaa~~~  132 (154)
T d1yh2a1          77 ----------------------PN--IDSAGRICLDVLKLPPKGAWRPSLNIATVLTSIQLLMSEPNPDDPLMADISSEF  132 (154)
T ss_dssp             ----------------------TT--BCTTCBBCCGGGSCTTTSCCCTTSCHHHHHHHHHHHHHSCCTTSCSCHHHHHHH
T ss_pred             ----------------------CC--cCCCCCcccccccCCccccCCccccHHHHHHHHHHHhccCCCCCchhHHHHHHH
Confidence                                  99  7899999999997543 6899999999999999999954 5555544  57788


Q ss_pred             HHhHHHHHHHHHHHHhhhCCh
Q 020053          167 KEERRALAIKSREAAPKFGTP  187 (332)
Q Consensus       167 ~~dr~~y~~kare~~~kya~~  187 (332)
                      .+|++.|.+++|+|++|||..
T Consensus       133 ~~~~~~f~~~~r~~~~k~a~~  153 (154)
T d1yh2a1         133 KYNKPAFLKNARQWTEKHARQ  153 (154)
T ss_dssp             HHCHHHHHHHHHHHHHHHSCC
T ss_pred             HHCHHHHHHHHHHHHHHHhcC
Confidence            899999999999999999863

>d1z3da1 d.20.1.1 (A:2-150) Ubiquitin conjugating enzyme, UBC {Nematode (Caenorhabditis elegans), E2-21.5 kDa [TaxId: 6239]}

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin conjugating enzyme, UBC
species: Nematode (Caenorhabditis elegans), E2-21.5 kDa [TaxId: 6239]

Probab=100.00  E-value=3.1e-38  Score=270.81  Aligned_cols=143  Identities=29%  Similarity=0.638  Sum_probs=132.5

Q ss_pred             ChHHHHHHHHHHHHHhhCCCCCeEEecCCCCceEEEEEEeCCCCCCCCCCEEEEEEEcCCCCCCCCCccccccccccccc
Q 020053            9 KNPAVKRILQEVKEMQSNPSDDFMSLPLEENIFEWQFAIRGPGDTEFEGGIYHGRIQLPAEYPFKPPSFMLLTVRCCSLM   88 (332)
Q Consensus         9 ~~~a~kRL~kEl~~l~~~p~~gi~v~p~ednl~~W~v~I~GP~dTpYeGGiF~l~I~fP~~YP~~PP~V~FlT~~~~~~i   88 (332)
                      +++|.|||++|+++|+++++.|+++.|.++|+++|+++|.||.+|||+||+|+|+|.||++||++||+|+|+|     ++
T Consensus         1 ~~pa~rRl~~E~~~l~~~~~~gi~~~p~~~n~~~w~~~i~gp~~tpy~gg~f~~~i~~p~~YP~~pP~v~f~t-----~i   75 (149)
T d1z3da1           1 TTPSRRRLMRDFKKLQEDPPAGVSGAPTEDNILTWEAIIFGPQETPFEDGTFKLSLEFTEEYPNKPPTVKFIS-----KM   75 (149)
T ss_dssp             CCHHHHHHHHHHHHHHHSCCTTEEEEEETTEEEEEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCCEEEESS-----CC
T ss_pred             CCHHHHHHHHHHHHHhhCCCCCEEEEECCCchhhhceeEECCCCccccCCEEEEEEEecCcCCCCCcEEEecC-----cc
Confidence            3578999999999999999999999999999999999999999999999999999999999999999999999     88


Q ss_pred             cccccccccCCceeecccccCCCCCCccccCCCeEEeecCCCCCCCCCCCCCHHHHHHHHHHhCCC-CCCChhh--hhHh
Q 020053           89 EHKSYCLCADYGVRTNVCAFFPPQPNGRFETQTKICLSISNHHPEHWQPSWSVRTALVALIAFMPT-NPNGALG--SLDY  165 (332)
Q Consensus        89 ~Hp~~~~~~~~~~~~n~~~~~h~~PNv~v~~~G~ICL~iL~~~~e~WsP~~ti~sVL~sI~~lL~~-nP~~~~~--a~~~  165 (332)
                      ||                      ||  |+.+|.||+++|.   +.|+|+++|.+||++|+++|.+ +++++.+  |+.+
T Consensus        76 ~H----------------------Pn--I~~~G~iCl~~l~---~~w~p~~~i~~il~~i~~ll~~p~~~~p~n~eaa~~  128 (149)
T d1z3da1          76 FH----------------------PN--VYADGSICLDILQ---NRWSPTYDVAAILTSIQSLLDEPNPNSPANSLAAQL  128 (149)
T ss_dssp             CC----------------------TT--BCTTCBBCCGGGT---TSCCTTCCHHHHHHHHHHTTSSCCCSSCSCHHHHHH
T ss_pred             cc----------------------ee--EcCCCCEEecccc---ccCCCCCCHHHHHHHHHHHhCCCCCCChhhHHHHHH
Confidence            88                      99  6789999999997   8899999999999999999964 4555544  6788


Q ss_pred             hHHhHHHHHHHHHHHHhh
Q 020053          166 KKEERRALAIKSREAAPK  183 (332)
Q Consensus       166 ~~~dr~~y~~kare~~~k  183 (332)
                      +++|+++|+++||+|++|
T Consensus       129 ~~~~~~~f~~~vr~~~~k  146 (149)
T d1z3da1         129 YQENRREYEKRVQQIVEQ  146 (149)
T ss_dssp             HHHCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHH
Confidence            899999999999999987

>d1ayza_ d.20.1.1 (A:) Ubiquitin conjugating enzyme, UBC {Baker's yeast (Saccharomyces cerevisiae), ubc2 (RAD6) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin conjugating enzyme, UBC
species: Baker's yeast (Saccharomyces cerevisiae), ubc2 (RAD6) [TaxId: 4932]

Probab=100.00  E-value=3.1e-38  Score=270.85  Aligned_cols=145  Identities=28%  Similarity=0.572  Sum_probs=134.6

Q ss_pred             ChHHHHHHHHHHHHHhhCCCCCeEEecCCCCceEEEEEEeCCCCCCCCCCEEEEEEEcCCCCCCCCCccccccccccccc
Q 020053            9 KNPAVKRILQEVKEMQSNPSDDFMSLPLEENIFEWQFAIRGPGDTEFEGGIYHGRIQLPAEYPFKPPSFMLLTVRCCSLM   88 (332)
Q Consensus         9 ~~~a~kRL~kEl~~l~~~p~~gi~v~p~ednl~~W~v~I~GP~dTpYeGGiF~l~I~fP~~YP~~PP~V~FlT~~~~~~i   88 (332)
                      +++|.|||++||++|+++++.||++.|.++|++.|+++|.||.+|||+||+|+++|.||++||++||+|+|+|     ++
T Consensus         1 st~A~kRl~~El~~l~~~~~~gi~~~p~~~n~~~w~~~i~gp~~tpy~gg~f~~~i~~p~~YP~~pP~v~f~t-----~i   75 (153)
T d1ayza_           1 STPARRRLMRDFKRMKEDAPPGVSASPLPDNVMVWNAMIIGPADTPYEDGTFRLLLEFDEEYPNKPPHVKFLS-----EM   75 (153)
T ss_dssp             CCHHHHHHHHHHHHHHHSCCTTEEEEEETTEEEEEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCCEEEESS-----CC
T ss_pred             CCHHHHHHHHHHHHHhHCCCCCEEEEECCCcHHhHhheeeCCCCCccCCCEEEEEEecCccccCCCCeeeecc-----CC
Confidence            4679999999999999999999999999999999999999999999999999999999999999999999999     88


Q ss_pred             cccccccccCCceeecccccCCCCCCccccCCCeEEeecCCCCCCCCCCCCCHHHHHHHHHHhCCC-CCCChhh--hhHh
Q 020053           89 EHKSYCLCADYGVRTNVCAFFPPQPNGRFETQTKICLSISNHHPEHWQPSWSVRTALVALIAFMPT-NPNGALG--SLDY  165 (332)
Q Consensus        89 ~Hp~~~~~~~~~~~~n~~~~~h~~PNv~v~~~G~ICL~iL~~~~e~WsP~~ti~sVL~sI~~lL~~-nP~~~~~--a~~~  165 (332)
                      ||                      ||  |+.+|.||++++.   +.|+|.++|++||.+|++||.+ +++++.+  ++++
T Consensus        76 ~H----------------------Pn--I~~~G~icl~~l~---~~W~p~~~i~~il~~i~~ll~~p~~~~~~n~eaa~l  128 (153)
T d1ayza_          76 FH----------------------PN--VYANGEICLDILQ---NRWTPTYDVASILTSIQSLFNDPNPASPANVEAATL  128 (153)
T ss_dssp             CC----------------------TT--BCTTSBBCCGGGT---TTCCTTCCHHHHHHHHHHHHTCCCCSSCSSHHHHHH
T ss_pred             Cc----------------------cC--CCCCCcccccccc---ccCCCcCcHHHHHHHHHHHHcCCCCCCcHHHHHHHH
Confidence            88                      99  6889999999997   8999999999999999999964 4455544  6788


Q ss_pred             hHHhHHHHHHHHHHHHhhhC
Q 020053          166 KKEERRALAIKSREAAPKFG  185 (332)
Q Consensus       166 ~~~dr~~y~~kare~~~kya  185 (332)
                      +++|+++|.+++|++++|+.
T Consensus       129 ~~~~~~~f~~~~~~~~~ks~  148 (153)
T d1ayza_         129 FKDHKSQYVKRVKETVEKSW  148 (153)
T ss_dssp             HHHCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHH
Confidence            89999999999999999874

>d1j7db_ d.20.1.1 (B:) Ubiquitin conjugating enzyme, UBC {Human (Homo sapiens), ubc13 [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin conjugating enzyme, UBC
species: Human (Homo sapiens), ubc13 [TaxId: 9606]

Probab=100.00  E-value=3.8e-38  Score=270.47  Aligned_cols=142  Identities=28%  Similarity=0.563  Sum_probs=132.8

Q ss_pred             HHHHHHHHHHHhhCCCCCeEEecCCCCceEEEEEEeCCCCCCCCCCEEEEEEEcCCCCCCCCCccccccccccccccccc
Q 020053           13 VKRILQEVKEMQSNPSDDFMSLPLEENIFEWQFAIRGPGDTEFEGGIYHGRIQLPAEYPFKPPSFMLLTVRCCSLMEHKS   92 (332)
Q Consensus        13 ~kRL~kEl~~l~~~p~~gi~v~p~ednl~~W~v~I~GP~dTpYeGGiF~l~I~fP~~YP~~PP~V~FlT~~~~~~i~Hp~   92 (332)
                      .|||++|+++|+++++.|+.+.|.++|+++|+++|.||.+|||+||+|+|+|.||++||++||+|+|.|     ++||  
T Consensus         4 ~kRl~kEl~~l~~~~~~gi~~~p~~~n~~~w~~~i~gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t-----~i~H--   76 (149)
T d1j7db_           4 PRRIIKETQRLLAEPVPGIKAEPDESNARYFHVVIAGPQDSPFEGGTFKLELFLPEEYPMAAPKVRFMT-----KIYH--   76 (149)
T ss_dssp             CHHHHHHHHHHTTSCCTTEEEEECSSCTTEEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCCEEEECS-----CCCB--
T ss_pred             cHHHHHHHHHHHhCCCCCEEEEECCCcccEeeeEEECCcccccCCCEEEEEEecCCcccCCCceeeecC-----CCCC--
Confidence            479999999999999999999999999999999999999999999999999999999999999999999     8888  


Q ss_pred             cccccCCceeecccccCCCCCCccccCCCeEEeecCCCCCCCCCCCCCHHHHHHHHHHhCCC-CCCChhh--hhHhhHHh
Q 020053           93 YCLCADYGVRTNVCAFFPPQPNGRFETQTKICLSISNHHPEHWQPSWSVRTALVALIAFMPT-NPNGALG--SLDYKKEE  169 (332)
Q Consensus        93 ~~~~~~~~~~~n~~~~~h~~PNv~v~~~G~ICL~iL~~~~e~WsP~~ti~sVL~sI~~lL~~-nP~~~~~--a~~~~~~d  169 (332)
                                          ||  ++.+|+||++++.   +.|+|.+++.+||.+|++||.+ +++++.+  +++++++|
T Consensus        77 --------------------Pn--i~~~G~icl~~l~---~~w~p~~~i~~il~~i~~ll~~p~~~~p~n~eaa~l~~~~  131 (149)
T d1j7db_          77 --------------------PN--VDKLGRICLDILK---DKWSPALQIRTVLLSIQALLSAPNPDDPLANDVAEQWKTN  131 (149)
T ss_dssp             --------------------TT--BCTTCBBCCGGGT---TSCCTTSCHHHHHHHHHHHHHSCCTTCTTCCSHHHHHHHC
T ss_pred             --------------------ce--ECCCCcEehHHhc---CCCCCCccHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHC
Confidence                                99  6789999999997   8899999999999999999954 5566655  67888899


Q ss_pred             HHHHHHHHHHHHhhhCC
Q 020053          170 RRALAIKSREAAPKFGT  186 (332)
Q Consensus       170 r~~y~~kare~~~kya~  186 (332)
                      ++.|.++||+|++|||+
T Consensus       132 ~~~f~~~ar~~~~kyA~  148 (149)
T d1j7db_         132 EAQAIETARAWTRLYAM  148 (149)
T ss_dssp             HHHHHHHHHHHHHHHSC
T ss_pred             HHHHHHHHHHHHHHhcc
Confidence            99999999999999986

>d2bepa1 d.20.1.1 (A:1-154) Ubiquitin-conjugating enzyme E2-25 kDa, E2 domain {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin-conjugating enzyme E2-25 kDa, E2 domain
species: Cow (Bos taurus) [TaxId: 9913]

Probab=100.00  E-value=6e-38  Score=270.58  Aligned_cols=147  Identities=31%  Similarity=0.541  Sum_probs=134.7

Q ss_pred             CChHHHHHHHHHHHHHhhCC---CCCeEEecCCCCceEEEEEEeCCCCCCCCCCEEEEEEEcCCCCCCCCCccccccccc
Q 020053            8 LKNPAVKRILQEVKEMQSNP---SDDFMSLPLEENIFEWQFAIRGPGDTEFEGGIYHGRIQLPAEYPFKPPSFMLLTVRC   84 (332)
Q Consensus         8 m~~~a~kRL~kEl~~l~~~p---~~gi~v~p~ednl~~W~v~I~GP~dTpYeGGiF~l~I~fP~~YP~~PP~V~FlT~~~   84 (332)
                      |++.|.+||++|+++|++..   ..++.+.+.++|+++|+++|.||++|||+||+|+++|.||++||++||+|+|.|   
T Consensus         1 Ms~~a~~Rl~kE~~~l~~~~~~~~~~i~~~~~~~n~~~w~~~i~gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t---   77 (154)
T d2bepa1           1 MANIAVQRIKREFKEVLKSEETSKNQIKVDLVDENFTELRGEIAGPPDTPYEGGRYQLEIKIPETYPFNPPKVRFIT---   77 (154)
T ss_dssp             CCHHHHHHHHHHHHHHHHCHHHHTTSEEEEECSSSSSEEEEEEECCTTSTTTTCEEEEEEECCTTTTSSCCEEEESS---
T ss_pred             CchHHHHHHHHHHHHHHHCCCCCCCcEEEEcCCCChhheEeeEecCccccccCCeeEEEEeccccccCCCCcceecc---
Confidence            88999999999999998764   568999999999999999999999999999999999999999999999999999   


Q ss_pred             cccccccccccccCCceeecccccCCCCCCcccc-CCCeEEeecCCCCCCCCCCCCCHHHHHHHHHHhCCC-CCCChhh-
Q 020053           85 CSLMEHKSYCLCADYGVRTNVCAFFPPQPNGRFE-TQTKICLSISNHHPEHWQPSWSVRTALVALIAFMPT-NPNGALG-  161 (332)
Q Consensus        85 ~~~i~Hp~~~~~~~~~~~~n~~~~~h~~PNv~v~-~~G~ICL~iL~~~~e~WsP~~ti~sVL~sI~~lL~~-nP~~~~~-  161 (332)
                        ++||                      ||  |+ .+|.||++++.   +.|+|+++|++||.+|+++|.+ |++++.+ 
T Consensus        78 --~i~H----------------------pn--i~~~~g~ic~~~~~---~~W~p~~~i~~il~~i~~ll~~p~~~~p~n~  128 (154)
T d2bepa1          78 --KIWH----------------------PN--ISSVTGAICLDILK---DQWAAAMTLRTVLLSLQALLAAAEPDDPQDA  128 (154)
T ss_dssp             --CCCB----------------------TT--BCTTTCBBCCGGGT---TTCCTTCCHHHHHHHHHHHHHSCCTTSCSCH
T ss_pred             --cCCC----------------------CC--eeCCCCcccccccc---ccCCCcCCHHHHHHHHHHHHcCCCCCCchHH
Confidence              8888                      99  55 48999999997   8999999999999999999954 5556554 


Q ss_pred             -hhHhhHHhHHHHHHHHHHHHhhhCC
Q 020053          162 -SLDYKKEERRALAIKSREAAPKFGT  186 (332)
Q Consensus       162 -a~~~~~~dr~~y~~kare~~~kya~  186 (332)
                       ++.++++|++.|.++||+||+|||+
T Consensus       129 eaa~l~~~~~~~f~~~a~~~t~k~A~  154 (154)
T d2bepa1         129 VVANQYKQNPEMFKQTARLWAHVYAG  154 (154)
T ss_dssp             HHHHHHHHCHHHHHHHHHHHHHHHSC
T ss_pred             HHHHHHHHCHHHHHHHHHHHHHHhcC
Confidence             6788899999999999999999985

>d1jata_ d.20.1.1 (A:) Ubiquitin conjugating enzyme, UBC {Baker's yeast (Saccharomyces cerevisiae), ubc13 [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin conjugating enzyme, UBC
species: Baker's yeast (Saccharomyces cerevisiae), ubc13 [TaxId: 4932]

Probab=100.00  E-value=2.6e-38  Score=272.81  Aligned_cols=144  Identities=28%  Similarity=0.590  Sum_probs=133.8

Q ss_pred             HHHHHHHHHHHHhhCCCCCeEEecCCCCceEEEEEEeCCCCCCCCCCEEEEEEEcCCCCCCCCCcccccccccccccccc
Q 020053           12 AVKRILQEVKEMQSNPSDDFMSLPLEENIFEWQFAIRGPGDTEFEGGIYHGRIQLPAEYPFKPPSFMLLTVRCCSLMEHK   91 (332)
Q Consensus        12 a~kRL~kEl~~l~~~p~~gi~v~p~ednl~~W~v~I~GP~dTpYeGGiF~l~I~fP~~YP~~PP~V~FlT~~~~~~i~Hp   91 (332)
                      +.|||++|+++|+++++.||++.|.++|+++|+++|.||.+|||+||+|+++|.||++||++||+|+|+|     +||| 
T Consensus         4 ~~rRl~~E~~~l~~~~~~g~~~~p~~~n~~~w~~~i~gp~~t~y~gg~f~~~i~fp~~YP~~pP~v~F~t-----~i~H-   77 (152)
T d1jata_           4 LPKRIIKETEKLVSDPVPGITAEPHDDNLRYFQVTIEGPEQSPYEDGIFELELYLPDDYPMEAPKVRFLT-----KIYH-   77 (152)
T ss_dssp             CCHHHHHHHHHHHHSCCTTEEEEEETTEEEEEEEEEECCTTSTTTTEEEEEEEECCTTTTTSCCEEEECS-----CCCB-
T ss_pred             HHHHHHHHHHHHHhCCCCCEEEEEcCCccchhheeeeCCchhhhcCCEEEEEEecCccCCCCCcEEEecC-----CCCC-
Confidence            5689999999999999999999999999999999999999999999999999999999999999999999     8888 


Q ss_pred             ccccccCCceeecccccCCCCCCccccCCCeEEeecCCCCCCCCCCCCCHHHHHHHHHHhCCC-CCCChhh--hhHhhHH
Q 020053           92 SYCLCADYGVRTNVCAFFPPQPNGRFETQTKICLSISNHHPEHWQPSWSVRTALVALIAFMPT-NPNGALG--SLDYKKE  168 (332)
Q Consensus        92 ~~~~~~~~~~~~n~~~~~h~~PNv~v~~~G~ICL~iL~~~~e~WsP~~ti~sVL~sI~~lL~~-nP~~~~~--a~~~~~~  168 (332)
                                           ||  |+.+|.+|++++.   +.|+|.++|++||.+|++||.+ |++++++  |++++.+
T Consensus        78 ---------------------Pn--I~~~G~icl~~~~---~~W~p~~~i~~il~~i~~ll~~P~~~~p~n~eaa~l~~~  131 (152)
T d1jata_          78 ---------------------PN--IDRLGRICLDVLK---TNWSPALQIRTVLLSIQALLASPNPNDPLANDVAEDWIK  131 (152)
T ss_dssp             ---------------------TT--BCTTCCBCCGGGT---TTCCTTCCHHHHHHHHHHHHHSCCTTSTTCCTTHHHHHH
T ss_pred             ---------------------Cc--CCCCCCeeecccc---ccCCchhHHHHHHHHHHHHHcCCCCCCcccHHHHHHHHH
Confidence                                 99  6789999999997   8899999999999999999964 5555554  6778889


Q ss_pred             hHHHHHHHHHHHHhhhCCh
Q 020053          169 ERRALAIKSREAAPKFGTP  187 (332)
Q Consensus       169 dr~~y~~kare~~~kya~~  187 (332)
                      |+++|.++||+|+++||..
T Consensus       132 d~~~f~~~~r~~~~~~a~~  150 (152)
T d1jata_         132 NEQGAKAKAREWTKLYAKK  150 (152)
T ss_dssp             CHHHHHHHHHHHHHHHSEE
T ss_pred             CHHHHHHHHHHHHHHHhcc
Confidence            9999999999999999864

>d2uyza1 d.20.1.1 (A:3-158) Ubiquitin conjugating enzyme, UBC {Human (Homo sapiens), ubc9 [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin conjugating enzyme, UBC
species: Human (Homo sapiens), ubc9 [TaxId: 9606]

Probab=100.00  E-value=8.5e-38  Score=270.79  Aligned_cols=146  Identities=25%  Similarity=0.482  Sum_probs=133.1

Q ss_pred             HHHHHHHHHHHHHhhCCCCCeEEecCCC-----CceEEEEEEeCCCCCCCCCCEEEEEEEcCCCCCCCCCcccccccccc
Q 020053           11 PAVKRILQEVKEMQSNPSDDFMSLPLEE-----NIFEWQFAIRGPGDTEFEGGIYHGRIQLPAEYPFKPPSFMLLTVRCC   85 (332)
Q Consensus        11 ~a~kRL~kEl~~l~~~p~~gi~v~p~ed-----nl~~W~v~I~GP~dTpYeGGiF~l~I~fP~~YP~~PP~V~FlT~~~~   85 (332)
                      .|++||++|+++|+++++.||++.|.++     |+++|+++|.||+||||+||+|+++|.||++||++||+|+|.|    
T Consensus         2 ~a~~Rl~~E~~~~~~~~~~g~~~~p~~~~~~~~n~~~W~~~i~gp~gtpY~gg~f~~~i~fp~~YP~~pP~v~f~t----   77 (156)
T d2uyza1           2 IALSRLAQERKAWRKDHPFGFVAVPTKNPDGTMNLMNWECAIPGKKGTPWEGGLFKLRMLFKDDYPSSPPKCKFEP----   77 (156)
T ss_dssp             HHHHHHHHHHHHHHHSCCTTCEEEEEECTTSCEEEEEEEEEEECCTTSTTTTCEEEEEEECCTTTTSSCCEEEESS----
T ss_pred             hHHHHHHHHHHHHHHCCCCCeEEEecCCCCCCCcccEEEEEEEcCCCCCccCCEEEEEEeCCccccCCCceeeecc----
Confidence            4899999999999999999999999865     9999999999999999999999999999999999999999999    


Q ss_pred             ccccccccccccCCceeecccccCCCCCCccccCCCeEEeecCCCCCCCCCCCCCHHHHHHHHHHhCCC-CCCChhh--h
Q 020053           86 SLMEHKSYCLCADYGVRTNVCAFFPPQPNGRFETQTKICLSISNHHPEHWQPSWSVRTALVALIAFMPT-NPNGALG--S  162 (332)
Q Consensus        86 ~~i~Hp~~~~~~~~~~~~n~~~~~h~~PNv~v~~~G~ICL~iL~~~~e~WsP~~ti~sVL~sI~~lL~~-nP~~~~~--a  162 (332)
                       ++||                      ||  |+.+|.+|+++|.. .++|+|+++|++||.+|+++|.+ |++++.+  +
T Consensus        78 -~i~H----------------------Pn--V~~~G~icl~~l~~-~~~W~p~~ti~~il~~i~~ll~~p~~~~p~n~ea  131 (156)
T d2uyza1          78 -PLFH----------------------PN--VYPSGTVSLSILEE-DKDWRPAITIKQILLGIQELLNEPNIQDPAQAEA  131 (156)
T ss_dssp             -CCCS----------------------TT--BCTTSBBCCGGGCT-TTTCCTTCCHHHHHHHHHHHHHSCCTTSCSCHHH
T ss_pred             -cccc----------------------cc--ccccceeeecccCc-ccccCCcccHHHHHHHHHHHhcCCCCCCccCHHH
Confidence             8888                      99  68899999999963 25899999999999999999954 5555544  5


Q ss_pred             hHhhHHhHHHHHHHHHHHHhhhCC
Q 020053          163 LDYKKEERRALAIKSREAAPKFGT  186 (332)
Q Consensus       163 ~~~~~~dr~~y~~kare~~~kya~  186 (332)
                      ++++.++++.|.++||+|++|||+
T Consensus       132 a~~~~~~~~~f~~~vr~~~~k~A~  155 (156)
T d2uyza1         132 YTIYCQNRVEYEKRVRAQAKKFAP  155 (156)
T ss_dssp             HHHHHHCHHHHHHHHHHHHHHTCC
T ss_pred             HHHHHHCHHHHHHHHHHHHHHHCC
Confidence            778889999999999999999996

>d2ucza_ d.20.1.1 (A:) Ubiquitin conjugating enzyme, UBC {Baker's yeast (Saccharomyces cerevisiae), ubc7 [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin conjugating enzyme, UBC
species: Baker's yeast (Saccharomyces cerevisiae), ubc7 [TaxId: 4932]

Probab=100.00  E-value=1.7e-37  Score=269.70  Aligned_cols=149  Identities=25%  Similarity=0.543  Sum_probs=133.8

Q ss_pred             ChHHHHHHHHHHHHHhhCCCCCeEEecC-CCCceEEEEEEeCCCCCCCCCCEEEEEEEcCCCCCCCCCcccccccccccc
Q 020053            9 KNPAVKRILQEVKEMQSNPSDDFMSLPL-EENIFEWQFAIRGPGDTEFEGGIYHGRIQLPAEYPFKPPSFMLLTVRCCSL   87 (332)
Q Consensus         9 ~~~a~kRL~kEl~~l~~~p~~gi~v~p~-ednl~~W~v~I~GP~dTpYeGGiF~l~I~fP~~YP~~PP~V~FlT~~~~~~   87 (332)
                      +..|.|||++|+++|++++++|+++.|. ++|+++|+++|.||+||||+||+|++.|.||++||++||+|+|.|     +
T Consensus         1 s~~a~kRL~~E~~~l~~~~~~gi~~~p~~e~nl~~w~~~I~Gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t-----~   75 (164)
T d2ucza_           1 SKTAQKRLLKELQQLIKDSPPGIVAGPKSENNIFIWDCLIQGPPDTPYADGVFNAKLEFPKDYPLSPPKLTFTP-----S   75 (164)
T ss_dssp             CHHHHHHHHHHHHHHHHSCCTTEEEEESSSSCCSEEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCCEEEESS-----C
T ss_pred             CHHHHHHHHHHHHHHhhCCCCCEEEEECCccchhhhheeeeCCCcccccCCeeEEEEecCCCCCCCCCeEEeec-----C
Confidence            4679999999999999999999999985 679999999999999999999999999999999999999999999     8


Q ss_pred             ccccccccccCCceeecccccCCCCCCccccCCCeEEeecCCCC----------CCCCCCCCCHHHHHHHHHHhCCC-CC
Q 020053           88 MEHKSYCLCADYGVRTNVCAFFPPQPNGRFETQTKICLSISNHH----------PEHWQPSWSVRTALVALIAFMPT-NP  156 (332)
Q Consensus        88 i~Hp~~~~~~~~~~~~n~~~~~h~~PNv~v~~~G~ICL~iL~~~----------~e~WsP~~ti~sVL~sI~~lL~~-nP  156 (332)
                      |||                      ||  |+.+|+||+++|+..          .+.|+|+++|++||.+|+.+|.+ |+
T Consensus        76 i~H----------------------Pn--v~~~G~vCl~il~~~~~~~~~~~~~~~~w~p~~ti~~il~~i~~ll~~p~~  131 (164)
T d2ucza_          76 ILH----------------------PN--IYPNGEVCISILHSPGDDPNMYELAEERWSPVQSVEKILLSVMSMLSEPNI  131 (164)
T ss_dssp             CSC----------------------TT--BCTTSBBCCGGGSCCCSCTTSTTTTTTSCCTTCCHHHHHHHHHHHHHSCCG
T ss_pred             cee----------------------ce--EcCCCCeeeccccCccccccccccccccCCccccHHHHHHHHHHHHhCCCC
Confidence            888                      99  678999999998632          46799999999999999999964 44


Q ss_pred             CChhh--hhHhhHHhHHHHHHHHHHHHhhhCC
Q 020053          157 NGALG--SLDYKKEERRALAIKSREAAPKFGT  186 (332)
Q Consensus       157 ~~~~~--a~~~~~~dr~~y~~kare~~~kya~  186 (332)
                      +++++  |++++++|+++|.++||+++.|+.+
T Consensus       132 ~~p~n~eaa~l~~~~~~~f~~~~r~~~~k~~~  163 (164)
T d2ucza_         132 ESGANIDACILWRDNRPEFERQVKLSILKSLG  163 (164)
T ss_dssp             GGCCCHHHHHHHHTTHHHHHHHHHHHHHHHTT
T ss_pred             CCcccHHHHHHHHHCHHHHHHHHHHHHHHHcC
Confidence            55544  6788889999999999999998754

>d1i7ka_ d.20.1.1 (A:) Ubiquitin conjugating enzyme, UBC {Human (Homo sapiens), ubch10 [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin conjugating enzyme, UBC
species: Human (Homo sapiens), ubch10 [TaxId: 9606]

Probab=100.00  E-value=9.8e-38  Score=267.74  Aligned_cols=143  Identities=28%  Similarity=0.487  Sum_probs=131.7

Q ss_pred             HHHHHHHHHHHHHhhCCCCCeEEecCCCCceEEEEEEeCCCCCCCCCCEEEEEEEcCCCCCCCCCccccccccccccccc
Q 020053           11 PAVKRILQEVKEMQSNPSDDFMSLPLEENIFEWQFAIRGPGDTEFEGGIYHGRIQLPAEYPFKPPSFMLLTVRCCSLMEH   90 (332)
Q Consensus        11 ~a~kRL~kEl~~l~~~p~~gi~v~p~ednl~~W~v~I~GP~dTpYeGGiF~l~I~fP~~YP~~PP~V~FlT~~~~~~i~H   90 (332)
                      ++.|||++|+++|+++++.|+++.+.++|+++|+++|.||+||||+||+|+++|.||++||++||+|+|+|     ++||
T Consensus         1 p~~kRl~~El~~l~~~~~~~i~~~~~~~d~~~w~~~i~gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t-----~i~H   75 (146)
T d1i7ka_           1 PVGKRLQQELMTLMMSGDKGISAFPESDNLFKWVGTIHGAAGTVYEDLRYKLSLEFPSGYPYNAPTVKFLT-----PCYH   75 (146)
T ss_dssp             CHHHHHHHHHHHHHHHCCTTEEEEEETTEEEEEEEEEEBCTTSTTBTCEEEEEEECCTTTTTSCCEEEESS-----CCCS
T ss_pred             CHHHHHHHHHHHHhhCCCCCEEEEEcCCcccEEEEEEecCccccccCCEEEEEEEecCCCCcCCceeeecC-----CCCc
Confidence            37899999999999999999999999999999999999999999999999999999999999999999999     8888


Q ss_pred             cccccccCCceeecccccCCCCCCccccCCCeEEeecCCCCCCCCCCCCCHHHHHHHHHHhCCC-CCCChhh--hhHhhH
Q 020053           91 KSYCLCADYGVRTNVCAFFPPQPNGRFETQTKICLSISNHHPEHWQPSWSVRTALVALIAFMPT-NPNGALG--SLDYKK  167 (332)
Q Consensus        91 p~~~~~~~~~~~~n~~~~~h~~PNv~v~~~G~ICL~iL~~~~e~WsP~~ti~sVL~sI~~lL~~-nP~~~~~--a~~~~~  167 (332)
                                            ||  |+.+|.||++++.   +.|+|+++|++||++|+++|.+ +++++++  +++++ 
T Consensus        76 ----------------------Pn--V~~~G~icl~~l~---~~W~p~~~i~~il~~i~~ll~~p~~~~p~n~~aa~l~-  127 (146)
T d1i7ka_          76 ----------------------PN--VDTQGNISLDILK---EKWSALYDVRTILLSIQSLLGEPNIDSPLNTHAAELW-  127 (146)
T ss_dssp             ----------------------TT--BCTTCBBCCGGGT---TTCCTTCCHHHHHHHHHHHHHSCCTTSCSCHHHHHHT-
T ss_pred             ----------------------cc--CCCCCcccccccc---ccCCCCcCHHHHHHHHHHHHhCCCCCCchhHHHHHHh-
Confidence                                  99  6789999999997   8999999999999999999964 5555554  56777 


Q ss_pred             HhHHHHHHHHHHHHhhhCC
Q 020053          168 EERRALAIKSREAAPKFGT  186 (332)
Q Consensus       168 ~dr~~y~~kare~~~kya~  186 (332)
                      +|+++|.++++++++||++
T Consensus       128 ~n~~~f~k~~~~~~~K~~~  146 (146)
T d1i7ka_         128 KNPTAFKKYLQETYSKQVT  146 (146)
T ss_dssp             TSHHHHHHHHHHHHHTTCC
T ss_pred             hCHHHHHHHHHHHHHccCC
Confidence            5999999999999999985

>d1fzya_ d.20.1.1 (A:) Ubiquitin conjugating enzyme, UBC {Baker's yeast (Saccharomyces cerevisiae), ubc1 [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin conjugating enzyme, UBC
species: Baker's yeast (Saccharomyces cerevisiae), ubc1 [TaxId: 4932]

Probab=100.00  E-value=8.9e-37  Score=261.44  Aligned_cols=144  Identities=27%  Similarity=0.505  Sum_probs=131.0

Q ss_pred             HHHHHHHHHHHHhhCCCCCeEEec-CCCCceEEEEEEeCCCCCCCCCCEEEEEEEcCCCCCCCCCccccccccccccccc
Q 020053           12 AVKRILQEVKEMQSNPSDDFMSLP-LEENIFEWQFAIRGPGDTEFEGGIYHGRIQLPAEYPFKPPSFMLLTVRCCSLMEH   90 (332)
Q Consensus        12 a~kRL~kEl~~l~~~p~~gi~v~p-~ednl~~W~v~I~GP~dTpYeGGiF~l~I~fP~~YP~~PP~V~FlT~~~~~~i~H   90 (332)
                      +.|||++|+++|++++++||++.+ .++|+++|+++|.||++|||+||+|+++|.||++||++||+|+|+|     +|||
T Consensus         2 ~~kRL~~El~~l~~~~~~gi~~~~~~~~~~~~w~~~I~gp~~t~y~gg~f~~~i~fp~~YP~~pP~v~f~t-----~i~H   76 (149)
T d1fzya_           2 RAKRIMKEIQAVKDDPAAHITLEFVSESDIHHLKGTFLGPPGTPYEGGKFVVDIEVPMEYPFKPPKMQFDT-----KVYH   76 (149)
T ss_dssp             HHHHHHHHHHHHHTCGGGCEEEEESCSSCSSEEEEEEECCTTSTTTTCEEEEEEECCTTTTSSCCEEEESS-----CCCB
T ss_pred             HHHHHHHHHHHHHHCCCCCEEEEECCCCchhEEEEEEEcCCCCCCCCCceeEEEEecCCcccCCcEEEecC-----CCcC
Confidence            679999999999999999999975 5679999999999999999999999999999999999999999999     8888


Q ss_pred             cccccccCCceeecccccCCCCCCccccCCCeEEeecCCCCCCCCCCCCCHHHHHHHHHHhCCC-CCCChhh--hhHhhH
Q 020053           91 KSYCLCADYGVRTNVCAFFPPQPNGRFETQTKICLSISNHHPEHWQPSWSVRTALVALIAFMPT-NPNGALG--SLDYKK  167 (332)
Q Consensus        91 p~~~~~~~~~~~~n~~~~~h~~PNv~v~~~G~ICL~iL~~~~e~WsP~~ti~sVL~sI~~lL~~-nP~~~~~--a~~~~~  167 (332)
                                            |||+ ..+|.+|++++.   +.|+|+++|++||++|+++|.+ |++++++  ++++++
T Consensus        77 ----------------------pnI~-~~~~~~~~~~~~---~~W~p~~ti~~il~~i~~ll~~p~~~~p~n~eaa~~~~  130 (149)
T d1fzya_          77 ----------------------PNIS-SVTGAICLDILK---NAWSPVITLKSALISLQALLQSPEPNDPQDAEVAQHYL  130 (149)
T ss_dssp             ----------------------TTBC-TTTCCBCCGGGT---TTCCTTCCHHHHHHHHHHHHHSCCTTSCSSHHHHHHHH
T ss_pred             ----------------------Cccc-CCcceeechhhc---ccCCCcCCHHHHHHHHHHHHhCCCCCChhHHHHHHHHH
Confidence                                  9952 357899999887   8999999999999999999964 5566655  678888


Q ss_pred             HhHHHHHHHHHHHHhhhCC
Q 020053          168 EERRALAIKSREAAPKFGT  186 (332)
Q Consensus       168 ~dr~~y~~kare~~~kya~  186 (332)
                      +|+++|.++||+|++|||+
T Consensus       131 ~~~~~f~~~~~~~~~k~A~  149 (149)
T d1fzya_         131 RDRESFNKTAALWTRLYAS  149 (149)
T ss_dssp             HCHHHHHHHHHHHHHHHCC
T ss_pred             HCHHHHHHHHHHHHHHhcC
Confidence            9999999999999999985

>d2e2ca_ d.20.1.1 (A:) Ubiquitin conjugating enzyme, UBC {Clam (Spisula solidissima), E-2C [TaxId: 6584]}

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin conjugating enzyme, UBC
species: Clam (Spisula solidissima), E-2C [TaxId: 6584]

Probab=100.00  E-value=2.3e-36  Score=261.95  Aligned_cols=148  Identities=28%  Similarity=0.522  Sum_probs=131.2

Q ss_pred             CCcccCCCChHHHHHHHHHHHHHhhCCCCCeEEecCCCCceEEEEEEeCCCCCCCCCCEEEEEEEcCCCCCCCCCccccc
Q 020053            1 MAEDRYNLKNPAVKRILQEVKEMQSNPSDDFMSLPLEENIFEWQFAIRGPGDTEFEGGIYHGRIQLPAEYPFKPPSFMLL   80 (332)
Q Consensus         1 ma~~~~~m~~~a~kRL~kEl~~l~~~p~~gi~v~p~ednl~~W~v~I~GP~dTpYeGGiF~l~I~fP~~YP~~PP~V~Fl   80 (332)
                      |++.+-..+  +.|||++|+++|++++++||++.|.++|+++|+++|.||.||||+||+|+++|.||++||++||+|+|+
T Consensus         1 m~~~~~~~~--~~kRl~kEl~~l~~~~~~gi~~~p~~~dl~~W~~~i~Gp~~t~yegg~f~~~i~fp~~YP~~pP~v~f~   78 (156)
T d2e2ca_           1 MTTSKERHS--VSKRLQQELRTLLMSGDPGITAFPDGDNLFKWVATLDGPKDTVYESLKYKLTLEFPSDYPYKPPVVKFT   78 (156)
T ss_dssp             CCCCCSCCC--HHHHHHHHHHHHHHHCCTTEEEEESSSCTTEEEEEEECCTTSTTTTCEEEEEEECCTTTTSSCCEEEES
T ss_pred             CCCCcccch--HHHHHHHHHHHHhHCCCCCEEEEECCCcccEEEEEEEcCCccccCCCEEEEEEEecCCCCCCCceeecc
Confidence            665554443  789999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cccccccccccccccccCCceeecccccCCCCCCccccCCCeEEeecCCCCCCCCCCCCCHHHHHHHHHHhCCC-CCCCh
Q 020053           81 TVRCCSLMEHKSYCLCADYGVRTNVCAFFPPQPNGRFETQTKICLSISNHHPEHWQPSWSVRTALVALIAFMPT-NPNGA  159 (332)
Q Consensus        81 T~~~~~~i~Hp~~~~~~~~~~~~n~~~~~h~~PNv~v~~~G~ICL~iL~~~~e~WsP~~ti~sVL~sI~~lL~~-nP~~~  159 (332)
                      |     ++||                      ||  |+.+|.||+++|.   +.|+|.++|++||++|++||.+ +++++
T Consensus        79 t-----~i~H----------------------pn--v~~~G~icl~~l~---~~Wsp~~~i~~vl~~i~~ll~~P~~~~p  126 (156)
T d2e2ca_          79 T-----PCWH----------------------PN--VDQSGNICLDILK---ENWTASYDVRTILLSLQSLLGEPNNASP  126 (156)
T ss_dssp             S-----CCCB----------------------TT--BCTTCBBCCGGGT---TTCCTTCCHHHHHHHHHHHTTSCCCSSC
T ss_pred             c-----cCcC----------------------CC--CCCCCCccccccC---CCCCCcccHHHHHHHHHHHHhCCCCCCh
Confidence            9     8888                      99  6889999999997   8999999999999999999954 55555


Q ss_pred             hh--hhHhhHHhHHHHHHHHHHHHhh
Q 020053          160 LG--SLDYKKEERRALAIKSREAAPK  183 (332)
Q Consensus       160 ~~--a~~~~~~dr~~y~~kare~~~k  183 (332)
                      ++  ++++++ ++.+|++++++.+.+
T Consensus       127 ~n~~aa~l~~-n~~~y~k~~~e~~~~  151 (156)
T d2e2ca_         127 LNAQAADMWS-NQTEYKKVLHEKYKT  151 (156)
T ss_dssp             SCHHHHHHTT-CHHHHHHHHHHHHHH
T ss_pred             hhHHHHHHHH-CHHHHHHHHHHHHHH
Confidence            54  466664 667899999987765

>d1wzva1 d.20.1.1 (A:2-151) Ubiquitin conjugating enzyme, UBC {Human (Homo sapiens), E2 L6 [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin conjugating enzyme, UBC
species: Human (Homo sapiens), E2 L6 [TaxId: 9606]

Probab=100.00  E-value=1.2e-36  Score=260.90  Aligned_cols=144  Identities=27%  Similarity=0.517  Sum_probs=130.0

Q ss_pred             HHHHHHHHHHHHhhCCCCCeEEecC-CCCceEEEEEEeCCCCCCCCCCEEEEEEEcCCCCCCCCCccccccccccccccc
Q 020053           12 AVKRILQEVKEMQSNPSDDFMSLPL-EENIFEWQFAIRGPGDTEFEGGIYHGRIQLPAEYPFKPPSFMLLTVRCCSLMEH   90 (332)
Q Consensus        12 a~kRL~kEl~~l~~~p~~gi~v~p~-ednl~~W~v~I~GP~dTpYeGGiF~l~I~fP~~YP~~PP~V~FlT~~~~~~i~H   90 (332)
                      |.+||++|+++|++++++|+.+.+. ++|++.|++.| ||++|||+||+|+++|.||++||++||+|+|+|     +|||
T Consensus         1 a~~Rl~kE~~~l~~~~p~gi~~~~~~~~~~~~w~~ii-gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t-----~i~H   74 (150)
T d1wzva1           1 ASMRVVKELEDLQKKPPPYLRNLSSDDANVLVWHALL-LPDQPPYHLKAFNLRISFPPEYPFKPPMIKFTT-----KIYH   74 (150)
T ss_dssp             CHHHHHHHHHHHHHSCCTTEEEEEECSSCTTEEEEEE-CCCSTTGGGEEEEEEEECCTTTTSSCCEEEESS-----CCCB
T ss_pred             CHHHHHHHHHHHHHCCCCCEEEEecCCCceEEEEEEE-CCCCCCccCceeeEEEecCcCCccCCceeeccC-----CCCc
Confidence            5789999999999999999998887 56899999866 899999999999999999999999999999999     8888


Q ss_pred             cccccccCCceeecccccCCCCCCccccCCCeEEeecCCCCCCCCCCCCCHHHHHHHHHHhCCC-CCCChhh--hhHhhH
Q 020053           91 KSYCLCADYGVRTNVCAFFPPQPNGRFETQTKICLSISNHHPEHWQPSWSVRTALVALIAFMPT-NPNGALG--SLDYKK  167 (332)
Q Consensus        91 p~~~~~~~~~~~~n~~~~~h~~PNv~v~~~G~ICL~iL~~~~e~WsP~~ti~sVL~sI~~lL~~-nP~~~~~--a~~~~~  167 (332)
                                            ||  |+.+|.||+++|.  +++|+|+++|.+||.+|+++|.+ +++++++  +++++.
T Consensus        75 ----------------------pn--I~~~G~icl~~l~--~~~W~p~~~i~~il~~i~~ll~~p~~~~p~n~eaa~~~~  128 (150)
T d1wzva1          75 ----------------------PN--VDENGQICLPIIS--SENWKPCTKTCQVLEALNVLVNRPNIREPLRMDLADLLT  128 (150)
T ss_dssp             ----------------------TT--BCTTCBCCCGGGC--TTTCCTTCCHHHHHHHHHHHHHSCCSSSCSSHHHHHHHH
T ss_pred             ----------------------ce--ECCCCCccccccc--ccCCCchhHHHHHHHHHHHHHhCCCCCCchHHHHHHHHH
Confidence                                  99  6789999999996  47899999999999999999954 4555544  678888


Q ss_pred             HhHHHHHHHHHHHHhhhCCh
Q 020053          168 EERRALAIKSREAAPKFGTP  187 (332)
Q Consensus       168 ~dr~~y~~kare~~~kya~~  187 (332)
                      +|++.|.++||+|++|||..
T Consensus       129 ~d~~~f~~~a~~~~~kya~~  148 (150)
T d1wzva1         129 QNPELFRKNAEEFTLRFGVD  148 (150)
T ss_dssp             HCHHHHHHHHHHHHHHHCEE
T ss_pred             HCHHHHHHHHHHHHHHhccc
Confidence            99999999999999999963

>d1yrva1 d.20.1.1 (A:1-148) Ubiquitin conjugating enzyme, UBC {Human (Homo sapiens), E2 U [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin conjugating enzyme, UBC
species: Human (Homo sapiens), E2 U [TaxId: 9606]

Probab=100.00  E-value=6.9e-37  Score=263.30  Aligned_cols=143  Identities=18%  Similarity=0.442  Sum_probs=130.1

Q ss_pred             CChHHHHHHHHHHHHHhhCCCCCeEEecCCCCceEEEEEEeCCCCCCCCCCEEEEEEEcCCCCCCCCCcccccccccccc
Q 020053            8 LKNPAVKRILQEVKEMQSNPSDDFMSLPLEENIFEWQFAIRGPGDTEFEGGIYHGRIQLPAEYPFKPPSFMLLTVRCCSL   87 (332)
Q Consensus         8 m~~~a~kRL~kEl~~l~~~p~~gi~v~p~ednl~~W~v~I~GP~dTpYeGGiF~l~I~fP~~YP~~PP~V~FlT~~~~~~   87 (332)
                      |++.|.+||+||+++|+++++.|+++.|.++|+++|+++|.||++|||+||+|+++|.||++||++||+|+|+|     +
T Consensus         1 m~~~a~~~L~kE~~~l~~~~~~gi~v~p~~~n~~~W~~~i~Gp~~t~yegg~f~~~i~fp~~YP~~pP~v~f~t-----~   75 (148)
T d1yrva1           1 MHGRAYLLLHRDFCDLKENNYKGITAKPVSEDMMEWEVEIEGLQNSVWQGLVFQLTIHFTSEYNYAPPVVKFIT-----I   75 (148)
T ss_dssp             GGCHHHHHHHHHHHHHHHHCCTTEEEEECSTTSCEEEEEEECCTTSTTTTCEEEEEEECCTTBTTBCCEEEESS-----C
T ss_pred             CCHHHHHHHHHHHHHHHHCCCCCEEEEECCCcccEEEEEEEeCCCCccCCCceEEEEEeccccccCCceeeecc-----c
Confidence            78899999999999999999999999999999999999999999999999999999999999999999999999     8


Q ss_pred             ccccccccccCCceeecccccCCCCCCcccc-CCCeEEeecCCCCCCCCCCCCCHHHHHHHHHHhCCC-CCCChhh--hh
Q 020053           88 MEHKSYCLCADYGVRTNVCAFFPPQPNGRFE-TQTKICLSISNHHPEHWQPSWSVRTALVALIAFMPT-NPNGALG--SL  163 (332)
Q Consensus        88 i~Hp~~~~~~~~~~~~n~~~~~h~~PNv~v~-~~G~ICL~iL~~~~e~WsP~~ti~sVL~sI~~lL~~-nP~~~~~--a~  163 (332)
                      +||                      ||  |+ .+|+||+++|+. .++|+|+++|++||.+|+++|.+ +++++.+  |+
T Consensus        76 i~H----------------------pn--V~~~~G~iC~~~l~~-~~~W~p~~tl~~vL~~I~~ll~~p~~~~p~n~eaa  130 (148)
T d1yrva1          76 PFH----------------------PN--VDPHTGQPCIDFLDN-PEKWNTNYTLSSILLALQVMLSNPVLENPVNLEAA  130 (148)
T ss_dssp             CCC----------------------TT--BCTTTCCBCCHHHHC-GGGCCTTCCHHHHHHHHHHHHTSCCTTSCSCHHHH
T ss_pred             ccc----------------------Cc--eecCcccccccccCc-hhhcCccccHHHHHHHHHHHHhCCCCCCchhHHHH
Confidence            888                      99  56 679999999852 36899999999999999999953 3345544  57


Q ss_pred             HhhHHhHHHHHHHHHHH
Q 020053          164 DYKKEERRALAIKSREA  180 (332)
Q Consensus       164 ~~~~~dr~~y~~kare~  180 (332)
                      +++++|++.|.++||++
T Consensus       131 ~ly~~~~~~f~~~~r~~  147 (148)
T d1yrva1         131 RILVKDESLYRTILRLF  147 (148)
T ss_dssp             HHHHSCHHHHHHHHHHH
T ss_pred             HHHHHCHHHHHHHHHhh
Confidence            88889999999999975

>d2f4za1 d.20.1.1 (A:32-192) Hypothetical protein Tgtwinscan_2721, E2 domain {Toxoplasma gondii [TaxId: 5811]}

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Hypothetical protein Tgtwinscan 2721, E2 domain
species: Toxoplasma gondii [TaxId: 5811]

Probab=100.00  E-value=2.5e-36  Score=263.02  Aligned_cols=144  Identities=26%  Similarity=0.511  Sum_probs=128.1

Q ss_pred             HHHHHHHHHHHHhh-------------CCCCCeEEecCCCCceEEEEEEeCCCCCCCCCCEEEEEEEcCCCCCCCCCccc
Q 020053           12 AVKRILQEVKEMQS-------------NPSDDFMSLPLEENIFEWQFAIRGPGDTEFEGGIYHGRIQLPAEYPFKPPSFM   78 (332)
Q Consensus        12 a~kRL~kEl~~l~~-------------~p~~gi~v~p~ednl~~W~v~I~GP~dTpYeGGiF~l~I~fP~~YP~~PP~V~   78 (332)
                      ..+||+||+++|++             ++..|+++.++++|+++|+++|.||.||||+||+|+|+|.||++||++||+|+
T Consensus         2 ~~~Rl~ke~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~nl~~W~~~I~Gp~~TpY~gg~f~~~i~fp~~YP~~pP~V~   81 (161)
T d2f4za1           2 EQARLLKELADIQQLQRAHDSEPAATHSTSHGVSAQIVGGDIHRWRGFIAGPLGTPYEGGHFTLDIVIPPDYPYNPPKMK   81 (161)
T ss_dssp             HHHHHHHHHHHHHHC----------------CEEEEEETTEEEEEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCCEEE
T ss_pred             chhHHHHHHHHHHHHhhccccCcccccCCCCCeEEEecCCccceeEEEEeCCCCCccCCCEEEEEEeccCCCCCCCcEEE
Confidence            46899999999976             34569999999999999999999999999999999999999999999999999


Q ss_pred             cccccccccccccccccccCCceeecccccCCCCCCccccCCCeEEeecCCCCCCCCCCCCCHHHHHHHHHHhCCC-CCC
Q 020053           79 LLTVRCCSLMEHKSYCLCADYGVRTNVCAFFPPQPNGRFETQTKICLSISNHHPEHWQPSWSVRTALVALIAFMPT-NPN  157 (332)
Q Consensus        79 FlT~~~~~~i~Hp~~~~~~~~~~~~n~~~~~h~~PNv~v~~~G~ICL~iL~~~~e~WsP~~ti~sVL~sI~~lL~~-nP~  157 (332)
                      |+|     +++|                      ||+ ++.+|.||++++.   +.|+|+++|++||.+|+.+|.+ +|+
T Consensus        82 F~t-----~i~H----------------------Pni-~~~~G~icl~~l~---~~W~p~~si~~iL~~I~~ll~~P~~~  130 (161)
T d2f4za1          82 FVT-----KIWH----------------------PNI-SSQTGAICLDILK---HEWSPALTIRTALLSIQAMLADPVPT  130 (161)
T ss_dssp             ESS-----CCCB----------------------TTB-CTTTCBBCCGGGT---TTCCTTSCHHHHHHHHHHHHHSCCTT
T ss_pred             ecC-----CCCC----------------------Cce-ECCCCCeecCccc---ccCCCcccHHHHHHHHHHHHhCCCCC
Confidence            999     8888                      996 4778999999997   7899999999999999999954 556


Q ss_pred             Chhh--hhHhhHHhHHHHHHHHHHHHhhhCC
Q 020053          158 GALG--SLDYKKEERRALAIKSREAAPKFGT  186 (332)
Q Consensus       158 ~~~~--a~~~~~~dr~~y~~kare~~~kya~  186 (332)
                      ++.+  ++.++.+|+++|.++||+|+++||.
T Consensus       131 dp~n~eaa~l~~~d~~~y~~~v~~~t~~~a~  161 (161)
T d2f4za1         131 DPQDAEVAKMMIENHPLFVQTAKLWTETFAK  161 (161)
T ss_dssp             SCSCHHHHHHHHHCHHHHHHHHHHHHHHHCC
T ss_pred             CchhHHHHHHHHHCHHHHHHHHHHHHHHHhC
Confidence            6655  5788899999999999999999983

>d1pzva_ d.20.1.1 (A:) Ubiquitin conjugating enzyme, UBC {Nematode (Caenorhabditis elegans), E2-19 kDa [TaxId: 6239]}

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin conjugating enzyme, UBC
species: Nematode (Caenorhabditis elegans), E2-19 kDa [TaxId: 6239]

Probab=100.00  E-value=9.8e-36  Score=258.12  Aligned_cols=144  Identities=24%  Similarity=0.565  Sum_probs=129.2

Q ss_pred             HHHHHHHHHHHhhCCCCCeEEecCC-CCceEEEEEEeCCCCCCCCCCEEEEEEEcCCCCCCCCCcccccccccccccccc
Q 020053           13 VKRILQEVKEMQSNPSDDFMSLPLE-ENIFEWQFAIRGPGDTEFEGGIYHGRIQLPAEYPFKPPSFMLLTVRCCSLMEHK   91 (332)
Q Consensus        13 ~kRL~kEl~~l~~~p~~gi~v~p~e-dnl~~W~v~I~GP~dTpYeGGiF~l~I~fP~~YP~~PP~V~FlT~~~~~~i~Hp   91 (332)
                      ..||+||+++|++++++||++.+.+ +|+++|+++|.||++|||+||+|+++|.||++||++||+|+|.|     +||| 
T Consensus         2 ~~~L~kE~~~l~~~~~~g~~v~~~~~~dl~~W~~~i~gp~~tpY~gg~f~~~i~fp~~YP~~pP~v~f~t-----~i~H-   75 (161)
T d1pzva_           2 SLLLKKQLADMRRVPVDGFSAGLVDDNDIYKWEVLVIGPPDTLYEGGFFKAILDFPRDYPQKPPKMKFIS-----EIWH-   75 (161)
T ss_dssp             HHHHHHHHHHHHHSCCTTEEEEESSTTCTTEEEEEEECCTTSSCSSCEEEEEEECCTTGGGSCCEEEECS-----CCCC-
T ss_pred             ChHHHHHHHHHHhCCCCCEEEEECCCCCceEEEEEEECCcchhhcCCEEEEEEeCCCCCCCCCCeEEecC-----CCCC-
Confidence            4699999999999999999999864 57999999999999999999999999999999999999999999     8888 


Q ss_pred             ccccccCCceeecccccCCCCCCccccCCCeEEeecCCCC----------CCCCCCCCCHHHHHHHHHHhCCC-CCCChh
Q 020053           92 SYCLCADYGVRTNVCAFFPPQPNGRFETQTKICLSISNHH----------PEHWQPSWSVRTALVALIAFMPT-NPNGAL  160 (332)
Q Consensus        92 ~~~~~~~~~~~~n~~~~~h~~PNv~v~~~G~ICL~iL~~~----------~e~WsP~~ti~sVL~sI~~lL~~-nP~~~~  160 (332)
                                           ||  |+.+|.||+++|...          .+.|+|+++|++||++|+++|.+ ++++++
T Consensus        76 ---------------------Pn--I~~~G~vcl~~l~~~~~~~~~~~~~~~~W~p~~~i~~iL~~i~~ll~~p~~~~p~  132 (161)
T d1pzva_          76 ---------------------PN--IDKEGNVCISILHDPGDDKWGYERPEERWLPVHTVETILLSVISMLTDPNFESPA  132 (161)
T ss_dssp             ---------------------TT--BCTTSBBCCGGGCCC---------CCSSCCTTCCHHHHHHHHHHHHHSCCCSSCS
T ss_pred             ---------------------cc--cCCCCccchhhcCCcccccccccccccccCccccHHHHHHHHHHHHhCCCCCCcc
Confidence                                 99  688999999999632          13699999999999999999954 555554


Q ss_pred             h--hhHhhHHhHHHHHHHHHHHHhhhC
Q 020053          161 G--SLDYKKEERRALAIKSREAAPKFG  185 (332)
Q Consensus       161 ~--a~~~~~~dr~~y~~kare~~~kya  185 (332)
                      +  +++++.++++.|.++|++|++|+.
T Consensus       133 n~eaa~l~~~~~~~f~~~a~~~v~k~~  159 (161)
T d1pzva_         133 NVDAAKMQRENYAEFKKKVAQCVRRSQ  159 (161)
T ss_dssp             CHHHHHHHHTCHHHHHHHHHHHHHHHT
T ss_pred             CHHHHHHHHHCHHHHHHHHHHHHHHHh
Confidence            4  678889999999999999999874

>d1c4zd_ d.20.1.1 (D:) Ubiquitin conjugating enzyme, UBC {Human (Homo sapiens), ubch7 [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin conjugating enzyme, UBC
species: Human (Homo sapiens), ubch7 [TaxId: 9606]

Probab=100.00  E-value=2e-36  Score=258.10  Aligned_cols=139  Identities=27%  Similarity=0.625  Sum_probs=126.4

Q ss_pred             HHHHHHHHHHhhCCCCCeEEecC-CCCceEEEEEEeCCCCCCCCCCEEEEEEEcCCCCCCCCCccccccccccccccccc
Q 020053           14 KRILQEVKEMQSNPSDDFMSLPL-EENIFEWQFAIRGPGDTEFEGGIYHGRIQLPAEYPFKPPSFMLLTVRCCSLMEHKS   92 (332)
Q Consensus        14 kRL~kEl~~l~~~p~~gi~v~p~-ednl~~W~v~I~GP~dTpYeGGiF~l~I~fP~~YP~~PP~V~FlT~~~~~~i~Hp~   92 (332)
                      |||++|+++|+++++.|+.+.+. ++|+++|+++| ||++|||+||+|+++|.||++||++||+|+|+|     ++||  
T Consensus         2 rRl~kEl~~l~~~~~~~~~~~~~~~~n~~~w~~~i-gp~~tpY~gg~f~~~i~fp~~YP~~pP~v~f~t-----~i~H--   73 (144)
T d1c4zd_           2 RRLMKELEEIRKCGMKNFRNIQVDEANLLTWQGLI-VPDNPPYDKGAFRIEINFPAEYPFKPPKITFKT-----KIYH--   73 (144)
T ss_dssp             TTHHHHHTTCSSSCCSSCEEECSSCSSSSEEEEEE-CCCSSSCCSCCEEEEEECCTTTTTSCCEEEESS-----CCCC--
T ss_pred             HHHHHHHHHHHhCCCCCeEEEECCCCcceEEEEEE-CCCCcCccCCEEEEEEEecCcccCCCceeeccC-----CCCC--
Confidence            79999999999999999987775 67999999999 999999999999999999999999999999999     8888  


Q ss_pred             cccccCCceeecccccCCCCCCccccCCCeEEeecCCCCCCCCCCCCCHHHHHHHHHHhCCC-CCCChhh--hhHhhHHh
Q 020053           93 YCLCADYGVRTNVCAFFPPQPNGRFETQTKICLSISNHHPEHWQPSWSVRTALVALIAFMPT-NPNGALG--SLDYKKEE  169 (332)
Q Consensus        93 ~~~~~~~~~~~n~~~~~h~~PNv~v~~~G~ICL~iL~~~~e~WsP~~ti~sVL~sI~~lL~~-nP~~~~~--a~~~~~~d  169 (332)
                                          ||  |+.+|.||+++|+  .+.|+|.+++.+||.+|+++|.+ +++++.+  ++.++.+|
T Consensus        74 --------------------Pn--V~~~G~icl~~l~--~~~w~p~~~i~~il~~i~~ll~~p~~~~p~n~~aa~~~~~d  129 (144)
T d1c4zd_          74 --------------------PN--IDEKGQVCLPVIS--AENWKPATKTDQVIQSLIALVNDPQPEHPLRADLAEEYSKD  129 (144)
T ss_dssp             --------------------TT--BCTTCBBCCTTTS--SSSCCTTCCHHHHHHHHHHHHHSCCCSSCSCHHHHHHHHTC
T ss_pred             --------------------cC--CccCCcccccccc--CCCCCCcccHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHH
Confidence                                99  6889999999997  46899999999999999999954 4455544  56778899


Q ss_pred             HHHHHHHHHHHHhhh
Q 020053          170 RRALAIKSREAAPKF  184 (332)
Q Consensus       170 r~~y~~kare~~~ky  184 (332)
                      ++.|.++||+|++||
T Consensus       130 ~~~f~~~a~~~~~ky  144 (144)
T d1c4zd_         130 RKKFCKNAEEFTKKY  144 (144)
T ss_dssp             SSTTHHHHHHHHTTC
T ss_pred             HHHHHHHHHHHHHhC
Confidence            999999999999997

>d2f4wa1 d.20.1.1 (A:12-168) Ubiquitin conjugating enzyme, UBC {Human (Homo sapiens), E2 J2 [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin conjugating enzyme, UBC
species: Human (Homo sapiens), E2 J2 [TaxId: 9606]

Probab=100.00  E-value=3.7e-34  Score=247.61  Aligned_cols=144  Identities=35%  Similarity=0.697  Sum_probs=115.3

Q ss_pred             HHHHHHHHHHHHHhhCCCCCeEEecCCCCceEEEEEEeCCCCCCCCCCEEEEEEEcCCCCCCCCCccccccccccccccc
Q 020053           11 PAVKRILQEVKEMQSNPSDDFMSLPLEENIFEWQFAIRGPGDTEFEGGIYHGRIQLPAEYPFKPPSFMLLTVRCCSLMEH   90 (332)
Q Consensus        11 ~a~kRL~kEl~~l~~~p~~gi~v~p~ednl~~W~v~I~GP~dTpYeGGiF~l~I~fP~~YP~~PP~V~FlT~~~~~~i~H   90 (332)
                      +|.|||++||++|+++++.|+++.|.++|+++|+++|.||.+|||+||.|+++|.||++||++||+|+|.|     +++|
T Consensus         1 tA~kRl~kE~~~l~~~p~~g~~~~p~~~n~~~w~~~i~Gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t-----~~~~   75 (157)
T d2f4wa1           1 TATQRLKQDYLRIKKDPVPYICAEPLPSNILEWHYVVRGPEMTPYEGGYYHGKLIFPREFPFKPPSIYMIT-----PNGR   75 (157)
T ss_dssp             CHHHHHHHHHHHHHHSCCTTEEEEEETTEEEEEEEEEECCTTSTTTTCEEEEEEECCTTTTSSCCEEEECS-----CCSS
T ss_pred             CHHHHHHHHHHHHHhCCCCCEEEEEcCcccceeeeEEECCCCccccCCEEEEEEeccCCcCCCCCEEEeeC-----CCcc
Confidence            48999999999999999999999999999999999999999999999999999999999999999999999     5555


Q ss_pred             cccccccCCceeecccccCCCCCCccccCCCeEEeecCCCCCCCCCCCCCHHHHHHHHHHhCCC-CCCCh-----hhhhH
Q 020053           91 KSYCLCADYGVRTNVCAFFPPQPNGRFETQTKICLSISNHHPEHWQPSWSVRTALVALIAFMPT-NPNGA-----LGSLD  164 (332)
Q Consensus        91 p~~~~~~~~~~~~n~~~~~h~~PNv~v~~~G~ICL~iL~~~~e~WsP~~ti~sVL~sI~~lL~~-nP~~~-----~~a~~  164 (332)
                                            ||    .+|++|+.++..++++|+|+++|++||++|++||.+ ||+..     ..+..
T Consensus        76 ----------------------~~----~~g~~~~~~l~~~~~~Wsp~~ti~~il~~i~~ll~~p~p~~~~~~~~~~~~~  129 (157)
T d2f4wa1          76 ----------------------FK----CNTRLCLSITDFHPDTWNPAWSVSTILTGLLSFMVEKGPTLGSIETSDFTKR  129 (157)
T ss_dssp             ----------------------BC----TTSCBC----------CCTTCCHHHHHHHHHHHHHSCCCCTTBCCCCHHHHH
T ss_pred             ----------------------cC----CCCCeeeeeccccCCCCCccCcHHHHHHHHHHHccCCCCCCCCccccHHHHH
Confidence                                  44    347777777665568999999999999999999954 55432     11233


Q ss_pred             hhHHhHHHHHHHHHHHHhhhC
Q 020053          165 YKKEERRALAIKSREAAPKFG  185 (332)
Q Consensus       165 ~~~~dr~~y~~kare~~~kya  185 (332)
                      .+.+++.+|..++++++++|.
T Consensus       130 ~~~~~~~~f~~k~~~~~~~~~  150 (157)
T d2f4wa1         130 QLAVQSLAFNLKDKVFCELFP  150 (157)
T ss_dssp             HHHHHHHHHHHTCHHHHHHCH
T ss_pred             HHHHHHHHHHHHHHHHHHHHH
Confidence            455677788888888888873

>d2a7la1 d.20.1.1 (A:1-117) Ubiquitin-protein ligase W (E2 W) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin-protein ligase W (E2 W)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=5e-34  Score=235.66  Aligned_cols=110  Identities=26%  Similarity=0.564  Sum_probs=102.3

Q ss_pred             HHHHHHHHHHHHhhCCCCCeEEec--CCCCceEEEEEEeCCCCCCCCCCEEEEEEEcCCCCCCCCCccccccccccccc-
Q 020053           12 AVKRILQEVKEMQSNPSDDFMSLP--LEENIFEWQFAIRGPGDTEFEGGIYHGRIQLPAEYPFKPPSFMLLTVRCCSLM-   88 (332)
Q Consensus        12 a~kRL~kEl~~l~~~p~~gi~v~p--~ednl~~W~v~I~GP~dTpYeGGiF~l~I~fP~~YP~~PP~V~FlT~~~~~~i-   88 (332)
                      +.|||++|+++|++++++|+.+.+  .++|+++|+++|.||+||||+||+|+++|.||++||++||+|+|.|     ++ 
T Consensus         4 ~~kRL~kEl~~l~~~~~~~~~~~~~~~~~~l~~w~~~i~Gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~F~t-----~~~   78 (117)
T d2a7la1           4 MQKRLQKELLALQNDPPPGMTLNEKSVQNSITQWIVDMEGAPGTLYEGEKFQLLFKFSSRYPFDSPQVMFTG-----ENI   78 (117)
T ss_dssp             SCHHHHHHHHHHHHSCCTTCCCCTTCCCCSCEEEEEEEECCTTSTTTTCEEEEEEEECTTTTTSCCEEEEES-----SCC
T ss_pred             HHHHHHHHHHHHhhCCCCCeEEEEecCCCCceEEEEEEeCCCCccccCCeeeEEEecCcccccCCCEEEEeC-----CCc
Confidence            468999999999999999998764  5679999999999999999999999999999999999999999999     55 


Q ss_pred             -cccccccccCCceeecccccCCCCCCccccCCCeEEeecCCCCCCCCCCCCCHHHHHHHHHHhCC
Q 020053           89 -EHKSYCLCADYGVRTNVCAFFPPQPNGRFETQTKICLSISNHHPEHWQPSWSVRTALVALIAFMP  153 (332)
Q Consensus        89 -~Hp~~~~~~~~~~~~n~~~~~h~~PNv~v~~~G~ICL~iL~~~~e~WsP~~ti~sVL~sI~~lL~  153 (332)
                       ||                      ||  ++.+|+||+++|+   ++|+|+++|++||++|++||+
T Consensus        79 ~~H----------------------pn--v~~~G~iCl~~l~---~~Wsp~~ti~~vl~~i~~lLs  117 (117)
T d2a7la1          79 PVH----------------------PH--VYSNGHICLSILT---EDWSPALSVQSVCLSIISMLS  117 (117)
T ss_dssp             CCB----------------------TT--BCTTCBBCCGGGT---TTCCTTSCHHHHHHHHHHHTC
T ss_pred             ccc----------------------cc--CcCCCeEEeecCc---CCCCCcCcHHHHHHHHHHHhC
Confidence             56                      99  6889999999997   899999999999999999983

>d1y8xa1 d.20.1.1 (A:27-183) Ubiquitin conjugating enzyme, UBC {Human (Homo sapiens), E2 M [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin conjugating enzyme, UBC
species: Human (Homo sapiens), E2 M [TaxId: 9606]

Probab=100.00  E-value=1.1e-33  Score=245.29  Aligned_cols=142  Identities=20%  Similarity=0.435  Sum_probs=124.4

Q ss_pred             ChHHHHHHHHHHHHHhhCCCCCeEEecCCCCceEEEEEEeCCCCCCCCCCEEEEEEEcCCCCCCCCCccccccccccccc
Q 020053            9 KNPAVKRILQEVKEMQSNPSDDFMSLPLEENIFEWQFAIRGPGDTEFEGGIYHGRIQLPAEYPFKPPSFMLLTVRCCSLM   88 (332)
Q Consensus         9 ~~~a~kRL~kEl~~l~~~p~~gi~v~p~ednl~~W~v~I~GP~dTpYeGGiF~l~I~fP~~YP~~PP~V~FlT~~~~~~i   88 (332)
                      ++.|.+||++|+++|++.+..++. .+.++|+++|+++| ||++|||+||+|+++|.||++||++||+|+|.|     +|
T Consensus         1 ~~~a~~Rl~kEl~~l~~~~~~~i~-~~~~~~l~~w~~~i-~p~~t~Y~gg~f~~~i~fp~~YP~~pP~V~f~t-----~i   73 (157)
T d1y8xa1           1 ASAAQLRIQKDINELNLPKTCDIS-FSDPDDLLNFKLVI-CPDEGFYKSGKFVFSFKVGQGYPHDPPKVKCET-----MV   73 (157)
T ss_dssp             CCHHHHHHHHHHHTCCCCTTEEEE-CSSTTCTTEEEEEE-CCSSSTTTTBCEEEEEECCTTTTTSCCEEEECS-----CC
T ss_pred             CCHHHHHHHHHHHHhCCCCCCcEE-EcCCCcceEEEEEE-CCCCCCcCCCeEEEEEEecCCCCCCCceeeecc-----cC
Confidence            467999999999999865433332 45678999999999 899999999999999999999999999999999     88


Q ss_pred             cccccccccCCceeecccccCCCCCCccccCCCeEEeecCCCCCCCCCCCCCHHHHHHHHHHhCCC-CCCChhh--hhHh
Q 020053           89 EHKSYCLCADYGVRTNVCAFFPPQPNGRFETQTKICLSISNHHPEHWQPSWSVRTALVALIAFMPT-NPNGALG--SLDY  165 (332)
Q Consensus        89 ~Hp~~~~~~~~~~~~n~~~~~h~~PNv~v~~~G~ICL~iL~~~~e~WsP~~ti~sVL~sI~~lL~~-nP~~~~~--a~~~  165 (332)
                      ||                      ||  |+.+|.||++++.   +.|+|+++|++||.+|+++|.+ |++++++  ++++
T Consensus        74 ~H----------------------Pn--v~~~G~ic~~~~~---~~W~p~~~i~~il~~I~~ll~~Pn~~~p~n~eaa~l  126 (157)
T d1y8xa1          74 YH----------------------PN--IDLEGNVCLNILR---EDWKPVLTINSIIYGLQYLFLEPNPEDPLNKEAAEV  126 (157)
T ss_dssp             CB----------------------TT--BCTTCBBCCGGGT---TTCCTTCCHHHHHHHHHHHHHSCCCSSCSCHHHHHH
T ss_pred             CC----------------------cc--ccccceeeeeecc---cCCCCCCcHHHHHHHHHHHHcCCCCcChHHHHHHHH
Confidence            88                      99  6789999999987   8999999999999999999964 5566654  6788


Q ss_pred             hHHhHHHHHHHHHHHHhhh
Q 020053          166 KKEERRALAIKSREAAPKF  184 (332)
Q Consensus       166 ~~~dr~~y~~kare~~~ky  184 (332)
                      +.+|++.|.++||++++..
T Consensus       127 ~~~~~~~f~~~v~~~~~~~  145 (157)
T d1y8xa1         127 LQNNRRLFEQNVQRSMRGG  145 (157)
T ss_dssp             HHSCHHHHHHHHHHHHHSE
T ss_pred             HHHCHHHHHHHHHHHHcCC
Confidence            8899999999999998754

>d2fo3a1 d.20.1.1 (A:9-117) Putative ubiquitin-conjugating enzyme, E2 domain {Plasmodium chabaudi [TaxId: 5825]}

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Putative ubiquitin-conjugating enzyme, E2 domain
species: Plasmodium chabaudi [TaxId: 5825]

Probab=100.00  E-value=5e-33  Score=227.77  Aligned_cols=107  Identities=26%  Similarity=0.512  Sum_probs=102.5

Q ss_pred             HHHHHHHHHhhCCCCCeEEecCCCCceEEEEEEeCCCCCCCCCCEEEEEEEcCCCCCCCCCccccccccccccc-ccccc
Q 020053           15 RILQEVKEMQSNPSDDFMSLPLEENIFEWQFAIRGPGDTEFEGGIYHGRIQLPAEYPFKPPSFMLLTVRCCSLM-EHKSY   93 (332)
Q Consensus        15 RL~kEl~~l~~~p~~gi~v~p~ednl~~W~v~I~GP~dTpYeGGiF~l~I~fP~~YP~~PP~V~FlT~~~~~~i-~Hp~~   93 (332)
                      ||+||+++|+++++.|+.+.+.++|+++|++.|.||++|||+||+|+++|.||++||++||+|+|.|     ++ +|   
T Consensus         2 Rl~kEl~~l~~~~~~g~~~~~~~~~~~~w~~~i~gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~F~t-----~~~~h---   73 (109)
T d2fo3a1           2 RIQKELHNFLNNPPINCTLDVHPNNIRIWIVKYVGLENTIYANEVYKLKIIFPDDYPLKPPIVYFLQ-----KPPKH---   73 (109)
T ss_dssp             HHHHHHHHHHHSCCTTEEEEECTTCTTEEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCCEEEECS-----SCCCB---
T ss_pred             HHHHHHHHHHhCCCCCEEEEEcCCcccEEEEEEecCchhhhcCCCceEEEEeccccCCCCCeEEEEe-----ccccC---
Confidence            8999999999999999999999999999999999999999999999999999999999999999999     65 55   


Q ss_pred             ccccCCceeecccccCCCCCCccccCCCeEEeecCCCCCCCCCCCCCHHHHHHHHHHhCC
Q 020053           94 CLCADYGVRTNVCAFFPPQPNGRFETQTKICLSISNHHPEHWQPSWSVRTALVALIAFMP  153 (332)
Q Consensus        94 ~~~~~~~~~~n~~~~~h~~PNv~v~~~G~ICL~iL~~~~e~WsP~~ti~sVL~sI~~lL~  153 (332)
                                         ||  ++.+|+||+++|+   ++|+|++|+++||++|++||+
T Consensus        74 -------------------pn--i~~~G~iCl~il~---~~Wsp~~ti~~vl~~i~~lls  109 (109)
T d2fo3a1          74 -------------------TH--VYSNGDICLSLLG---DDYNPSLSISGLVLSIISMLS  109 (109)
T ss_dssp             -------------------TT--BCTTSBBCCGGGT---TTCCTTCCHHHHHHHHHHHHC
T ss_pred             -------------------ce--ECCCCeEEeeccc---CCCCccCCHHHHHHHHHHHhC
Confidence                               99  7899999999998   899999999999999999983

>d1yf9a1 d.20.1.1 (A:13-170) Ubiquitin conjugating enzyme, UBC {Leishmania major [TaxId: 5664]}

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin conjugating enzyme, UBC
species: Leishmania major [TaxId: 5664]

Probab=99.97  E-value=7.8e-33  Score=240.34  Aligned_cols=142  Identities=24%  Similarity=0.511  Sum_probs=122.8

Q ss_pred             HHHHHHHHHHHhhCCCCCeEEecCCCCceEEEEEEeCCCCCCCCCCEEEEEEEcCCCCCCCCCccccccccccccccccc
Q 020053           13 VKRILQEVKEMQSNPSDDFMSLPLEENIFEWQFAIRGPGDTEFEGGIYHGRIQLPAEYPFKPPSFMLLTVRCCSLMEHKS   92 (332)
Q Consensus        13 ~kRL~kEl~~l~~~p~~gi~v~p~ednl~~W~v~I~GP~dTpYeGGiF~l~I~fP~~YP~~PP~V~FlT~~~~~~i~Hp~   92 (332)
                      .|||++|+++|.+++..   +.|. ||+++|++.|.||.+|||+||+|+++|.||++||++||+|+|.|     +|||  
T Consensus         2 ~rr~~~e~~~l~~~~~~---~~~~-d~~~~w~v~i~Gp~~TpY~gg~f~~~i~fp~~YP~~pP~v~F~t-----~i~H--   70 (158)
T d1yf9a1           2 NRRREMDYMRLCNSTRK---VYPS-DTVAEFWVEFKGPEGTPYEDGTWMLHVQLPSDYPFKSPSIGFCN-----RILH--   70 (158)
T ss_dssp             CHHHHHHHHHHHSSSSC---EEEC-SSTTEEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCCEEEESS-----CCCB--
T ss_pred             chHHHHHHHHHhcCCCc---CCCC-CCceEEEEEEECCCCCCccCcEEEEEEECcccchhhceeEEecC-----CCCC--
Confidence            48999999999988753   5554 79999999999999999999999999999999999999999999     8888  


Q ss_pred             cccccCCceeecccccCCCCCCccccCCCeEEeecCCCCCCCCCCCCCHHHHHHHHH-HhCCC-CCCChhh--hhHhhHH
Q 020053           93 YCLCADYGVRTNVCAFFPPQPNGRFETQTKICLSISNHHPEHWQPSWSVRTALVALI-AFMPT-NPNGALG--SLDYKKE  168 (332)
Q Consensus        93 ~~~~~~~~~~~n~~~~~h~~PNv~v~~~G~ICL~iL~~~~e~WsP~~ti~sVL~sI~-~lL~~-nP~~~~~--a~~~~~~  168 (332)
                                          |||+ ..+|.||+++|.   +.|+|.+++.++|..++ .||.+ |++++.+  |++++.+
T Consensus        71 --------------------PnI~-~~~G~vcl~il~---~~W~p~~~i~~il~~~i~~ll~~P~~~~p~N~eaa~l~~~  126 (158)
T d1yf9a1          71 --------------------PNVD-ERSGSVCLDVIN---QTWTPMYQLENIFDVFLPQLLRYPNPSDPLNVQAAHLLHA  126 (158)
T ss_dssp             --------------------TTBC-TTTCBBCHHHHH---HHCCTTCCTHHHHHTHHHHHHHSCCSSCCSCHHHHHHHHH
T ss_pred             --------------------CCCc-cCcccccccccc---cccCchHhhhhHHHHHHHHHhcCCCCCcchhHHHHHHHHH
Confidence                                9952 458999999997   88999999999997654 55532 4445544  6788899


Q ss_pred             hHHHHHHHHHHHHhhhCChhH
Q 020053          169 ERRALAIKSREAAPKFGTPER  189 (332)
Q Consensus       169 dr~~y~~kare~~~kya~~~~  189 (332)
                      |++.|.+++|+|++|||++..
T Consensus       127 n~~~f~~~~k~~~~k~a~~~~  147 (158)
T d1yf9a1         127 DRVGFDALLREHVSTHATPQK  147 (158)
T ss_dssp             CHHHHHHHHHHHHHHHCCHHH
T ss_pred             CHHHHHHHHHHHHHHHCChhh
Confidence            999999999999999998763

>d2awfa1 d.20.1.1 (A:7-131) Ubiquitin conjugating enzyme, UBC {Human (Homo sapiens), E2 G1 [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin conjugating enzyme, UBC
species: Human (Homo sapiens), E2 G1 [TaxId: 9606]

Probab=99.97  E-value=1.7e-32  Score=228.94  Aligned_cols=110  Identities=28%  Similarity=0.744  Sum_probs=102.3

Q ss_pred             HHHHHHHHHHhhCCCCCeEEecC-CCCceEEEEEEeCCCCCCCCCCEEEEEEEcCCCCCCCCCccccccccccccccccc
Q 020053           14 KRILQEVKEMQSNPSDDFMSLPL-EENIFEWQFAIRGPGDTEFEGGIYHGRIQLPAEYPFKPPSFMLLTVRCCSLMEHKS   92 (332)
Q Consensus        14 kRL~kEl~~l~~~p~~gi~v~p~-ednl~~W~v~I~GP~dTpYeGGiF~l~I~fP~~YP~~PP~V~FlT~~~~~~i~Hp~   92 (332)
                      -||+||+++|++++++|+.+.+. ++|+++|+++|.||++|||+||+|+++|.||++||++||+|+|.|     ++||  
T Consensus         2 ~~L~kEl~~l~~~~~~gi~~~~~~~~dl~~w~~~i~Gp~~tpyegg~f~~~i~fp~~YP~~pP~v~f~t-----~i~H--   74 (125)
T d2awfa1           2 LLLRRQLAELNKNPVEGFSAGLIDDNDLYRWEVLIIGPPDTLYEGGVFKAHLTFPKDYPLRPPKMKFIT-----EIWH--   74 (125)
T ss_dssp             HHHHHHHHHHHHSCCTTEEEEESSTTCTTEEEEEEECCTTSTTTTCEEEEEEECCTTTTSSCCEEEECS-----CCCC--
T ss_pred             chHHHHHHHHHhCCCCCEEEEeCCCCCceEEEEEEeCCCCcccCCCeeEEEEecCCCcCCCCCeEEecC-----CCCc--
Confidence            48999999999999999999875 668999999999999999999999999999999999999999999     8888  


Q ss_pred             cccccCCceeecccccCCCCCCccccCCCeEEeecCCC----------CCCCCCCCCCHHHHHHHHHHhC
Q 020053           93 YCLCADYGVRTNVCAFFPPQPNGRFETQTKICLSISNH----------HPEHWQPSWSVRTALVALIAFM  152 (332)
Q Consensus        93 ~~~~~~~~~~~n~~~~~h~~PNv~v~~~G~ICL~iL~~----------~~e~WsP~~ti~sVL~sI~~lL  152 (332)
                                          ||  ++.+|.||+++|+.          +.++|+|++|+++||++|++||
T Consensus        75 --------------------pn--i~~~G~iCl~iL~~~~~~~~~~~~~~~~Wsp~~ti~~iL~~i~~ll  122 (125)
T d2awfa1          75 --------------------PN--VDKNGDVCISILHEPGEDKYGYEKPEERWLPIHTVETIMISVISML  122 (125)
T ss_dssp             --------------------TT--BCTTCBBCCGGGSCC---------CTTSCCTTCCHHHHHHHHHHHH
T ss_pred             --------------------cc--cCCCCEEEeccccCccccccccccccCCcCccCcHHHHHHHHHHHh
Confidence                                99  78999999999852          2367999999999999999999

>d1zuoa1 d.20.1.1 (A:201-362) Ubiquitin-conjugating enzyme E2 Q2, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin-conjugating enzyme E2 Q2, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.96  E-value=1.1e-31  Score=233.36  Aligned_cols=140  Identities=11%  Similarity=0.330  Sum_probs=117.4

Q ss_pred             ChHHHHHHHHHHHHHhhCCCC--C-eEEecCCCCceEEEEEEeC-CCCCCCCCCE-----------EEEEEEcCCCCCCC
Q 020053            9 KNPAVKRILQEVKEMQSNPSD--D-FMSLPLEENIFEWQFAIRG-PGDTEFEGGI-----------YHGRIQLPAEYPFK   73 (332)
Q Consensus         9 ~~~a~kRL~kEl~~l~~~p~~--g-i~v~p~ednl~~W~v~I~G-P~dTpYeGGi-----------F~l~I~fP~~YP~~   73 (332)
                      +..|.+||+|||++|++++..  | +.+.+.++|+++|++.|.| |++|||+||+           |+++|.||++||++
T Consensus         2 s~~a~~RL~kEl~~l~k~~~~~~~~~~v~~~~dnl~~W~v~i~g~p~~tp~~~g~~~~~~~~g~~~~~l~i~fp~~YP~~   81 (162)
T d1zuoa1           2 SVQASDRLMKELRDIYRSQSYKTGIYSVELINDSLYDWHVKLQKVDPDSPLHSDLQILKEKEGIEYILLNFSFKDNFPFD   81 (162)
T ss_dssp             CHHHHHHHHHHHHHHHTSHHHHTTSEEEEEETTEEEEEEEEECCCCTTSHHHHHHHHHHHHHSCCSEEEEEECCTTTTSS
T ss_pred             cHHHHHHHHHHHHHHHhCCCCCCCeEEeecCCCcccEEEEEEEecCCCCchhcchhhhhcccCCceEEEEEECCCchhhh
Confidence            567999999999999987753  4 4567788999999999999 8899999987           99999999999999


Q ss_pred             CCccccccccccccccccccccccCCceeecccccCCCCCCccccCCCeEEeecCCCCCCCCCCCCCHHHHHHHHHHhCC
Q 020053           74 PPSFMLLTVRCCSLMEHKSYCLCADYGVRTNVCAFFPPQPNGRFETQTKICLSISNHHPEHWQPSWSVRTALVALIAFMP  153 (332)
Q Consensus        74 PP~V~FlT~~~~~~i~Hp~~~~~~~~~~~~n~~~~~h~~PNv~v~~~G~ICL~iL~~~~e~WsP~~ti~sVL~sI~~lL~  153 (332)
                      ||+|+|+|     ++||                      ||+ ++.+|.||+++|.  +++|+|++||++||++|+++|.
T Consensus        82 PP~v~f~t-----~i~h----------------------pn~-~~~~G~iCl~iL~--~~~WsP~~ti~~IL~~i~~ll~  131 (162)
T d1zuoa1          82 PPFVRVVL-----PVLS----------------------GGY-VLGGGALCMELLT--KQGWSSAYSIESVIMQINATLV  131 (162)
T ss_dssp             CCEEEEEE-----SCEE----------------------STT-BCGGGBBCCGGGS--TTTCCTTSCHHHHHHHHHHHHH
T ss_pred             cceEEEEE-----Eeec----------------------ccc-ccCCceeeccccc--CCCCCCcccHHHHHHHHHHHHc
Confidence            99999999     8888                      775 6888999999996  4789999999999999999985


Q ss_pred             C-CCCChhh----hhHhhHHhHHHHHHHHHH
Q 020053          154 T-NPNGALG----SLDYKKEERRALAIKSRE  179 (332)
Q Consensus       154 ~-nP~~~~~----a~~~~~~dr~~y~~kare  179 (332)
                      + +|+...+    +..+ .+++++|++.+|.
T Consensus       132 ~~~p~~~~~~~~~~y~~-~~~~~~y~~~~~~  161 (162)
T d1zuoa1         132 KGKARVQFGANKNQYNL-ARAQQSYNSIVQI  161 (162)
T ss_dssp             HTTCEECTTCCTTCCCH-HHHHHHHHHHHHH
T ss_pred             CCCCCCCCCcCHHHHHH-HHhHHHHHHHHhh
Confidence            4 5532222    2333 4677889988874

>d2a4da1 d.20.1.1 (A:82-220) Ubiquitin conjugating enzyme, UBC {Human (Homo sapiens), E2 variant 1 [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin conjugating enzyme, UBC
species: Human (Homo sapiens), E2 variant 1 [TaxId: 9606]

Probab=99.96  E-value=2e-29  Score=214.61  Aligned_cols=116  Identities=26%  Similarity=0.368  Sum_probs=100.3

Q ss_pred             hHHHHHHHHHHHHHhhCCCCCeEEecC----CCCceEEEEEEeCCCCCCCCCCEEEEEEEcCCCCCCCCCcccccccccc
Q 020053           10 NPAVKRILQEVKEMQSNPSDDFMSLPL----EENIFEWQFAIRGPGDTEFEGGIYHGRIQLPAEYPFKPPSFMLLTVRCC   85 (332)
Q Consensus        10 ~~a~kRL~kEl~~l~~~p~~gi~v~p~----ednl~~W~v~I~GP~dTpYeGGiF~l~I~fP~~YP~~PP~V~FlT~~~~   85 (332)
                      -++.+||+|||++|++++++++.+.+.    ++|+++|+++|.||.+|||+||+|+++|.||++||++||+|+|.|    
T Consensus         4 ~~r~~RL~kEl~~l~k~~~~~~~~~~~~~~~d~nl~~W~~~I~Gp~~TpYegg~f~~~i~fp~~YP~~pP~v~F~t----   79 (139)
T d2a4da1           4 VPRNFRLLEELEEGQKGVGDGTVSWGLEDDEDMTLTRWTGMIIGPPRTIYENRIYSLKIECGPKYPEAPPFVRFVT----   79 (139)
T ss_dssp             HHHHHHHHHHHHHHHSCCTTSSEEEEESSTTCTTCCEEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCCEEEESB----
T ss_pred             cchhHHHHHHHHHHhhCCCCCceeeeccCCCcccccEEEEEEECCCCCchhcCEEEEEEECCCCCCCCCCEEEEec----
Confidence            468899999999999999998766554    337999999999999999999999999999999999999999999    


Q ss_pred             ccccccccccccCCceeecccccCCCCCCccccCCCeEEeecCCCCCCCCCCCCCHHHHHHHHHHhCCC
Q 020053           86 SLMEHKSYCLCADYGVRTNVCAFFPPQPNGRFETQTKICLSISNHHPEHWQPSWSVRTALVALIAFMPT  154 (332)
Q Consensus        86 ~~i~Hp~~~~~~~~~~~~n~~~~~h~~PNv~v~~~G~ICL~iL~~~~e~WsP~~ti~sVL~sI~~lL~~  154 (332)
                       ++||                      ||| ...+|.+|++.+.. .++|+|++||++||++|++||.+
T Consensus        80 -~i~H----------------------pnV-~~~~g~~~~~~l~~-l~~Wsp~~ti~~iL~~i~slL~~  123 (139)
T d2a4da1          80 -KINM----------------------NGV-NSSNGVVDPRAISV-LAKWQNSYSIKVVLQELRRLMMS  123 (139)
T ss_dssp             -CCCC----------------------TTB-CTTTCBBCGGGSHH-HHTCCTTCCHHHHHHHHHHHHTS
T ss_pred             -Cccc----------------------ccC-cCCCCEEcceecCc-ccCCCccCcHHHHHHHHHHHHCC
Confidence             8888                      895 25667877665521 14799999999999999999964

>d1jatb_ d.20.1.1 (B:) Ubiquitin conjugating enzyme, UBC {Baker's yeast (Saccharomyces cerevisiae), mms2 [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin conjugating enzyme, UBC
species: Baker's yeast (Saccharomyces cerevisiae), mms2 [TaxId: 4932]

Probab=99.95  E-value=2.3e-29  Score=213.92  Aligned_cols=114  Identities=20%  Similarity=0.343  Sum_probs=96.3

Q ss_pred             hHHHHHHHHHHHHHhhCCCC-CeEEecCCC---CceEEEEEEeCCCCCCCCCCEEEEEEEcCCCCCCCCCcccccccccc
Q 020053           10 NPAVKRILQEVKEMQSNPSD-DFMSLPLEE---NIFEWQFAIRGPGDTEFEGGIYHGRIQLPAEYPFKPPSFMLLTVRCC   85 (332)
Q Consensus        10 ~~a~kRL~kEl~~l~~~p~~-gi~v~p~ed---nl~~W~v~I~GP~dTpYeGGiF~l~I~fP~~YP~~PP~V~FlT~~~~   85 (332)
                      .++.+||+|||++++++.++ ++...+.++   |+++|+++|.||++|||+||+|+++|.||++||++||+|+|.|    
T Consensus         3 ~p~~~RL~kEl~~~~k~~~~~~~~~~~~~~dd~~l~~W~~~i~Gp~~tpy~gg~f~~~i~fp~~YP~~PP~v~f~t----   78 (136)
T d1jatb_           3 VPRNFRLLEELEKGEKGFGPESCSYGLADSDDITMTKWNGTILGPPHSNHENRIYSLSIDCGPNYPDSPPKVTFIS----   78 (136)
T ss_dssp             CCHHHHHHHHHHHHHC----CCEEEEESSTTCTTCCEEEEEEECCSSSTTTTCEEEEEEECCTTTTTSCCEEEESB----
T ss_pred             CchHHHHHHHHHHHhccCCCCcEEEeecCCCCCceeEEEEEEECCCCChhhcCEEEEEEEecCCCCCCCCEEEEec----
Confidence            35789999999999998644 555544432   5999999999999999999999999999999999999999999    


Q ss_pred             ccccccccccccCCceeecccccCCCCCCccccCCCeEEeecCCCCCCCCCCCCCHHHHHHHHHHhCC
Q 020053           86 SLMEHKSYCLCADYGVRTNVCAFFPPQPNGRFETQTKICLSISNHHPEHWQPSWSVRTALVALIAFMP  153 (332)
Q Consensus        86 ~~i~Hp~~~~~~~~~~~~n~~~~~h~~PNv~v~~~G~ICL~iL~~~~e~WsP~~ti~sVL~sI~~lL~  153 (332)
                       +|||                      |||+ ..+|.||++++.  .++|+|+++|++||++|++||.
T Consensus        79 -~i~H----------------------pnV~-~~~G~icl~~l~--~~~Wsp~~ti~~IL~~i~~lL~  120 (136)
T d1jatb_          79 -KINL----------------------PCVN-PTTGEVQTDFHT--LRDWKRAYTMETLLLDLRKEMA  120 (136)
T ss_dssp             -CCCC----------------------TTBC-TTTCBBCTTSHH--HHTCCTTCCHHHHHHHHHHHHT
T ss_pred             -cccc----------------------cccc-cCCCeEECCCCc--ccCcCccCcHHHHHHHHHHHHc
Confidence             8888                      9952 356999999875  2689999999999999999994

>d1s1qa_ d.20.1.2 (A:) Tumor susceptibility gene 101 (TSG101) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UEV domain
domain: Tumor susceptibility gene 101 (TSG101)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.67  E-value=9.7e-18  Score=141.96  Aligned_cols=114  Identities=14%  Similarity=0.211  Sum_probs=89.9

Q ss_pred             HHHHHHHHHhhCCC---CCeEEecCCCCceEEEEEEeCCCCCCCCCCEEEE--EEEcCCCCCCCCCcccccccccccccc
Q 020053           15 RILQEVKEMQSNPS---DDFMSLPLEENIFEWQFAIRGPGDTEFEGGIYHG--RIQLPAEYPFKPPSFMLLTVRCCSLME   89 (332)
Q Consensus        15 RL~kEl~~l~~~p~---~gi~v~p~ednl~~W~v~I~GP~dTpYeGGiF~l--~I~fP~~YP~~PP~V~FlT~~~~~~i~   89 (332)
                      +..+|+.++.+.-+   ++..+...+++..+|.+.|.|+.+++|+||.|.+  .|.||.+||++||.|.|.+...-...+
T Consensus        18 ~~~~d~~~~l~~~~~l~p~~~~f~~~dg~~~~ll~l~G~~~~~y~g~~y~~pi~i~~p~~YP~~pP~v~~~pt~~~~~~~   97 (141)
T d1s1qa_          18 LTVRETVNVITLYKDLKPVLDSYVFNDGSSRELMNLTGTIPVPYRGNTYNIPICLWLLDTYPYNPPICFVKPTSSMTIKT   97 (141)
T ss_dssp             HHHHHHHHHHHHCTTEEEEEEEEECTTSCEEEEEEEEEEEEEEETTEEEEEEEEEEECTTTTSSCCEEEECCCTTCEECC
T ss_pred             hHHHHHHHHHHhCCCCCCccceEEeCCCCceEEEEEECCCCcccCCCEEEEEEEEECCccCCCCCCEEEEecCCCccccC
Confidence            55567777765433   4666777888999999999999999999999998  666899999999999887521111234


Q ss_pred             ccccccccCCceeecccccCCCCCCccccCCCeEEeecCCCCCCCCCCCCCHHHHHHHHHHhCCCC
Q 020053           90 HKSYCLCADYGVRTNVCAFFPPQPNGRFETQTKICLSISNHHPEHWQPSWSVRTALVALIAFMPTN  155 (332)
Q Consensus        90 Hp~~~~~~~~~~~~n~~~~~h~~PNv~v~~~G~ICL~iL~~~~e~WsP~~ti~sVL~sI~~lL~~n  155 (332)
                      |                      ||  ++.+|+||+++|+   +.|.+..++.++|..|+.+|.++
T Consensus        98 h----------------------~~--V~~~G~V~lp~L~---~W~~~~s~L~~ll~~L~~~f~~e  136 (141)
T d1s1qa_          98 G----------------------KH--VDANGKIYLPYLH---EWKHPQSDLLGLIQVMIVVFGDE  136 (141)
T ss_dssp             S----------------------SS--BCTTCBBCCHHHH---TCCTTTCCHHHHHHHHHHHHHHS
T ss_pred             C----------------------Ce--ECCCCCCcchhhc---CCCcccccHHHHHHHHHHHhCCC
Confidence            4                      89  6899999999996   44567789999999999998653

>d1uzxa_ d.20.1.2 (A:) Vacuolar protein sorting-associated {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UEV domain
domain: Vacuolar protein sorting-associated
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.55  E-value=3.5e-15  Score=127.67  Aligned_cols=119  Identities=13%  Similarity=0.142  Sum_probs=88.6

Q ss_pred             HHHHHHHHHHHhhCCC---CCeEEecCCCCceEEEEEEeCCCCCCCCCCE---EEEEEEcCCCCCCCCCccccccccc--
Q 020053           13 VKRILQEVKEMQSNPS---DDFMSLPLEENIFEWQFAIRGPGDTEFEGGI---YHGRIQLPAEYPFKPPSFMLLTVRC--   84 (332)
Q Consensus        13 ~kRL~kEl~~l~~~p~---~gi~v~p~ednl~~W~v~I~GP~dTpYeGGi---F~l~I~fP~~YP~~PP~V~FlT~~~--   84 (332)
                      -+|+.+|+..+.++-+   +.......+|....+.+.|.|.-..+|+|+.   |.+.|.||++||+.||.+.|.+..+  
T Consensus        21 ~~~v~~dv~~~l~~y~~L~p~~~~~~~~dg~~~~Ll~l~Gtipi~y~g~~~y~ipi~I~lP~~YP~~pP~v~~~~~~~~~  100 (152)
T d1uzxa_          21 GRTTFHDSLALLDNFHSLRPRTRVFTHSDGTPQLLLSIYGTISTGEDGSSPHSIPVIMWVPSMYPVKPPFISINLENFDM  100 (152)
T ss_dssp             HHHHHHHHHHHHHHCTTEEEEEEEEECTTSCEEEEEEEEEEECCC-------CEEEEEECCTTTTTSCCEEEECCTTCCS
T ss_pred             cchHHHHHHHHHHhCCCCCcccceeecCCCCcceEEEEEcccccccCCCceeEEEEEEEcCCCCCCCCCEEEEecCcccc
Confidence            3578888888876543   2333444566778888999999999999996   6788999999999999999987311  


Q ss_pred             -ccc---ccccccccccCCceeecccccCCCCCCccccCCCeEEeecCCCCCCCCCCCCCHHHHHHHHHHhCCCCCCC
Q 020053           85 -CSL---MEHKSYCLCADYGVRTNVCAFFPPQPNGRFETQTKICLSISNHHPEHWQPSWSVRTALVALIAFMPTNPNG  158 (332)
Q Consensus        85 -~~~---i~Hp~~~~~~~~~~~~n~~~~~h~~PNv~v~~~G~ICL~iL~~~~e~WsP~~ti~sVL~sI~~lL~~nP~~  158 (332)
                       +..   ++|                      ||  ++.+|+||+++|+   +.|.+..++.++|..|+.+|.+.|.|
T Consensus       101 ~~~~~~i~~h----------------------p~--Vd~~G~V~lp~L~---~W~~~~s~L~~ll~~l~~~f~~~P~d  151 (152)
T d1uzxa_         101 NTISSSLPIQ----------------------EY--IDSNGWIALPILH---CWDPAAMNLIMVVQELMSLLHEPPQD  151 (152)
T ss_dssp             CC----CGGG----------------------GG--BCTTSCBCCHHHH---SCCTTTCCHHHHHHHHHTGGGSCCCC
T ss_pred             cCCCcccccC----------------------CC--CCCCCcEehHHhc---CCCCccCcHHHHHHHHHHHhcCCCCC
Confidence             111   234                      89  7899999999997   56689999999999999999877765

>d2in1a1 d.20.1.4 (A:3-164) Ufm1-conjugating enzyme 1, UFC1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UFC1-like
domain: Ufm1-conjugating enzyme 1, UFC1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.80  E-value=0.002  Score=53.58  Aligned_cols=101  Identities=17%  Similarity=0.247  Sum_probs=55.3

Q ss_pred             HHHHHHHHHHHHhh-------CCCCCeEEecCCCCceEEEEEEeCCCCCCCCCCEEEEEEEcCCCCCCCCCccccccccc
Q 020053           12 AVKRILQEVKEMQS-------NPSDDFMSLPLEENIFEWQFAIRGPGDTEFEGGIYHGRIQLPAEYPFKPPSFMLLTVRC   84 (332)
Q Consensus        12 a~kRL~kEl~~l~~-------~p~~gi~v~p~ednl~~W~v~I~GP~dTpYeGGiF~l~I~fP~~YP~~PP~V~FlT~~~   84 (332)
                      =..||..||..|.+       +..+-|.+.. ..+=..|...--=-.+  ..--.|.+++.+|..||..||.+..-..-.
T Consensus        26 W~~RLKEEy~aLI~Yv~nNK~~dndWF~les-n~~GT~W~GkCWyihn--l~kYeFd~eFdIP~tYP~t~pEi~lPeLdG  102 (162)
T d2in1a1          26 WVQRLKEEYQSLIRYVENNKNADNDWFRLES-NKEGTRWFGKCWYIHD--LLKYEFDIEFDIPITYPTTAPEIAVPELDG  102 (162)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHTTCCCEEEEE-CTTSSEEEEEEEEEET--TEEEEEEEEEECCTTTTTSCCCCBCGGGSS
T ss_pred             HHHHHHHHHHHHHHHHHhcccccCCeEEecc-CCCCCeeeceeeEEEe--eeEEEEEEEeccCCCCCCCCcceeccccCC
Confidence            56899999998864       1222333332 2223344332110000  001135566778999999999987655211


Q ss_pred             cccccccccccccCCceeecccccCCCCCCccccCCCeEEeecCCCCCCCC---CCCCCHHHHH
Q 020053           85 CSLMEHKSYCLCADYGVRTNVCAFFPPQPNGRFETQTKICLSISNHHPEHW---QPSWSVRTAL  145 (332)
Q Consensus        85 ~~~i~Hp~~~~~~~~~~~~n~~~~~h~~PNv~v~~~G~ICL~iL~~~~e~W---sP~~ti~sVL  145 (332)
                      .+                          .  ..|.+|+|||++-.  ..-|   .|.+.|...|
T Consensus       103 KT--------------------------a--KMYRGGkIClt~HF--kPLWarN~PkfGIaHal  136 (162)
T d2in1a1         103 KT--------------------------A--KMYRGGKICLTDHF--KPLWARNVPKFGLAHLM  136 (162)
T ss_dssp             SC--------------------------S--SSCGGGBCCCCTTS--HHHHHTTTTSCCHHHHH
T ss_pred             ch--------------------------h--hhhcCceeeccccc--hhhhhhcCCchhHHHHH
Confidence            10                          1  15778999997532  2335   4566766654

>d2daya1 d.20.1.3 (A:8-122) E3 ubiquitin-protein ligase RNF25 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: RWD domain
domain: E3 ubiquitin-protein ligase RNF25
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.39  E-value=0.11  Score=39.64  Aligned_cols=66  Identities=23%  Similarity=0.355  Sum_probs=43.8

Q ss_pred             HHHHHHHHhhCCCCCeEEecCCCCceEEEEEEeC-CC---CCCCCCCEEEEEEEcCCCCCCCCCcccccc
Q 020053           16 ILQEVKEMQSNPSDDFMSLPLEENIFEWQFAIRG-PG---DTEFEGGIYHGRIQLPAEYPFKPPSFMLLT   81 (332)
Q Consensus        16 L~kEl~~l~~~p~~gi~v~p~ednl~~W~v~I~G-P~---dTpYeGGiF~l~I~fP~~YP~~PP~V~FlT   81 (332)
                      |..|+..|+.--++.+......++...+.+.|.- |.   +..-......+.+.||.+||..+|.+.++.
T Consensus         6 ~~~EleaL~SIY~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~v~L~~~~p~~YP~~~P~i~~~~   75 (115)
T d2daya1           6 LPSEVEVLESIYLDELQVIKGNGRTSPWEIYITLHPATAEDQDSQYVCFTLVLQVPAEYPHEVPQISIRN   75 (115)
T ss_dssp             HHHHHHHHHHHSTTTEEEECCTTSSCCEEEEEEECCSCCSSSSCCCCEEEEEEEECSSTTSSCCEEEEEE
T ss_pred             HHHHHHHHHhHCCCceEEeccCCCCCCeEEEEEEecCCCCCCcccceEEEEEEEcCCCCCCCCCcEEeec
Confidence            5678888888666677665555544444444431 21   111122467899999999999999988777