Citrus Sinensis ID: 020062

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-
MDEWPIIDPLPSYGRGRERLGGRHISLIHGDHLTNVIITGYNGTIDGQGQMWWDLWWNRTLKHTRGHLVELMNSNNILISNLTFRNSPFWTIHPVYCRNVVIKGMTILAPLNAPNTDGIDPDSSTNVCIEDCYIESGDDLVAVKSGWDHYGIAMARPSSNIIVRRVSGTTPTCSGVGIGSEMSGGIFNVTVDQLHVWDAAAGVRIKTDKGRGGYIENITIRNIKMERVKIPIRISRGSNDHPDEGWDPKALPKIRGISFVNVVSVNTTKAPVLAGIIGTQFEEICMKNVSLLGLAPSAKWQCQFVSGFTSQVFPLPCPQLQNKSSSWCSFS
cccccccccccccccccccccccccccEEEEcEEcEEEEEccEEEEccccHHcccccccccccccccEEEEEEEEcEEEEcEEEEccccEEEEEEcEEcEEEEEEEEEccccccccccccccccccEEEEccEEEccccEEEEcccccccccccccccccEEEEEEEEEcccccEEEEcccccccEEEEEEEEEEEEccccEEEEEccccccEEEEEEEEEEEEEEccccEEEEEcccccccccccccccccEEEcEEEEEEEEEcccccEEEEEcccccEEEEEEEEEEEEcccccccEEEEEEEEEEccEEcccccccccccccccccc
cccccccccccccccccccccccccEEEEEccccEEEEEccccEEccccHHHHHHHHccccccccccEEEEEEcccEEEEEEEEEccccEEEEEEcccEEEEEEEEEEccccccccccEEEEccEEEEEEccEEEcccccEEEEEcccHccEEEccccccEEEEEEEEEcccccEEEEEcccccccEEEEEEEEEEEEcccEEEEEEccccccEEEEEEEEEEEEEcEEEEEEEEccccccccccccccccEEEEEEEEEEEEEcccEEEEEEEcccccccccEEEEEEEEEEcccccccEEEcEEEEEccccccccHHcccccccccccc
mdewpiidplpsygrgrerlggrhislihgdhLTNVIItgyngtidgqgQMWWDLWWNRTLKHTRGHLVELMNSnnilisnltfrnspfwtihpvycRNVVIKGMtilaplnapntdgidpdsstnvciedcyiesgddlVAVKSGwdhygiamarpssnIIVRRvsgttptcsgvgigsemsggifnvTVDQLHVWDAAAGvriktdkgrggyienitirnikmervkipirisrgsndhpdegwdpkalpkirgisFVNVVSVNTTKAPVLAGIIGTQFEEICMKNvsllglapsakwqcqfvsgftsqvfplpcpqlqnkssswcsfs
mdewpiidplpsygrgRERLGGRHISLIHGDHLTNVIITGYNGTIDGQGQMWWDLWWNRTLKHTRGHLVELMNSNNILISNLTFRNSPFWTIHPVYCRNVVIKGMTILAPLNAPNTDGIDPDSSTNVCIEDCYIESGDDLVAVKSGWDHYGIAMARPSSNIIVRRVSGTTPTCSGVGIGSEMSGGIFNVTVDQLHVWDAAAgvriktdkgrggyienitirnikmervKIPIRisrgsndhpdegWDPKALPKIRGISFVNVVSVNTTKAPVLAGIIGTQFEEICMKNVSLLGLAPSAKWQCQFVSGFTSQVFPLpcpqlqnkssswcsfs
MDEWPIIDPLPSYGRGRERLGGRHISLIHGDHLTNVIITGYNGTIDGQGQMWWDLWWNRTLKHTRGHLVELMnsnnilisnlTFRNSPFWTIHPVYCRNVVIKGMTILAPLNAPNTDGIDPDSSTNVCIEDCYIESGDDLVAVKSGWDHYGIAMARPSSNIIVRRVSGTTPTCSGVGIGSEMSGGIFNVTVDQLHVWDAAAGVRIKTDKGRGGYIENITIRNIKMERVKIPIRISRGSNDHPDEGWDPKALPKIRGISFVNVVSVNTTKAPVLAGIIGTQFEEICMKNVSLLGLAPSAKWQCQFVSGFTSQVFPLPCPQLQNKSSSWCSFS
******I*****YGRGRERLGGRHISLIHGDHLTNVIITGYNGTIDGQGQMWWDLWWNRTLKHTRGHLVELMNSNNILISNLTFRNSPFWTIHPVYCRNVVIKGMTILAPLNAPNTDGIDPDSSTNVCIEDCYIESGDDLVAVKSGWDHYGIAMARPSSNIIVRRVSGTTPTCSGVGIGSEMSGGIFNVTVDQLHVWDAAAGVRIKTDKGRGGYIENITIRNIKMERVKIPIRIS**********WDPKALPKIRGISFVNVVSVNTTKAPVLAGIIGTQFEEICMKNVSLLGLAPSAKWQCQFVSGFTSQVFPLPCP*************
MDEWPIIDPLPSYGRGRERLGGRHISLIHGDHLTNVIITGYNGTIDGQGQMWWDLWWNRTLKHTRGHLVELMNSNNILISNLTFRNSPFWTIHPVYCRNVVIKGMTILAPLNAPNTDGIDPDSSTNVCIEDCYIESGDDLVAVKSGWDHYGIAMARPSSNIIVRRVSGTTPTCSGVGIGSEMSGGIFNVTVDQLHVWDAAAGVRIKTDKGRGGYIENITIRNIKMERVKIPIRISRGSNDHPDEGWDPKALPKIRGISFVNVVSVNTTKAPVLAGIIGTQFEEICMKNVSLLGLAPSAKWQCQFVSGFTSQVFPLPCP*************
MDEWPIIDPLPSYGRGRERLGGRHISLIHGDHLTNVIITGYNGTIDGQGQMWWDLWWNRTLKHTRGHLVELMNSNNILISNLTFRNSPFWTIHPVYCRNVVIKGMTILAPLNAPNTDGIDPDSSTNVCIEDCYIESGDDLVAVKSGWDHYGIAMARPSSNIIVRRVSGTTPTCSGVGIGSEMSGGIFNVTVDQLHVWDAAAGVRIKTDKGRGGYIENITIRNIKMERVKIPIRISRGSNDHPDEGWDPKALPKIRGISFVNVVSVNTTKAPVLAGIIGTQFEEICMKNVSLLGLAPSAKWQCQFVSGFTSQVFPLPCPQLQ**********
*DEWPIIDPLPSYGRGRERLGGRHISLIHGDHLTNVIITGYNGTIDGQGQMWWDLWWNRTLKHTRGHLVELMNSNNILISNLTFRNSPFWTIHPVYCRNVVIKGMTILAPLNAPNTDGIDPDSSTNVCIEDCYIESGDDLVAVKSGWDHYGIAMARPSSNIIVRRVSGTTPTCSGVGIGSEMSGGIFNVTVDQLHVWDAAAGVRIKTDKGRGGYIENITIRNIKMERVKIPIRISRGSNDHPDEGWDPKALPKIRGISFVNVVSVNTTKAPVLAGIIGTQFEEICMKNVSLLGLAPSAKWQCQFVSGFTSQVFPLPCPQLQ**********
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MDEWPIIDPLPSYGRGRERLGGRHISLIHGDHLTNVIITGYNGTIDGQGQMWWDLWWNRTLKHTRGHLVELMNSNNILISNLTFRNSPFWTIHPVYCRNVVIKGMTILAPLNAPNTDGIDPDSSTNVCIEDCYIESGDDLVAVKSGWDHYGIAMARPSSNIIVRRVSGTTPTCSGVGIGSEMSGGIFNVTVDQLHVWDAAAGVRIKTDKGRGGYIENITIRNIKMERVKIPIRISRGSNDHPDEGWDPKALPKIRGISFVNVVSVNTTKAPVLAGIIGTQFEEICMKNVSLLGLAPSAKWQCQFVSGFTSQVFPLPCPQLQNKSSSWCSFS
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query331 2.2.26 [Sep-21-2011]
A7PZL3491 Probable polygalacturonas no no 0.993 0.670 0.491 3e-89
P18192402 Endo-polygalacturonase OS N/A no 0.737 0.606 0.339 7e-22
P26509402 Endo-polygalacturonase OS N/A no 0.734 0.604 0.344 1e-21
Q9LW07456 Probable polygalacturonas no no 0.779 0.565 0.3 6e-21
Q94AJ5444 Probable polygalacturonas no no 0.851 0.635 0.297 7e-21
Q9FY19507 Polygalacturonase OS=Juni N/A no 0.700 0.457 0.311 5e-20
Q7M1E7514 Polygalacturonase OS=Cham N/A no 0.676 0.435 0.299 6e-20
P27644312 Polygalacturonase OS=Rhiz yes no 0.616 0.653 0.315 1e-19
P05117457 Polygalacturonase-2 OS=So N/A no 0.616 0.446 0.3 1e-16
Q02096462 Polygalacturonase OS=Pers N/A no 0.688 0.493 0.250 2e-16
>sp|A7PZL3|PGLR_VITVI Probable polygalacturonase OS=Vitis vinifera GN=GSVIVT00026920001 PE=1 SV=1 Back     alignment and function desciption
 Score =  328 bits (842), Expect = 3e-89,   Method: Compositional matrix adjust.
 Identities = 165/336 (49%), Positives = 228/336 (67%), Gaps = 7/336 (2%)

Query: 1   MDEWPIIDPLPSYGRGRERLGGRHISLIHGDHLTNVIITGYNGTIDGQGQMWWDLWWNRT 60
           + +WP+I PLPSYGRGR+   GR+ SLI G +LT+VIITG NGTIDGQG +WW  +    
Sbjct: 134 ISQWPVIKPLPSYGRGRDAAAGRYTSLIFGTNLTDVIITGDNGTIDGQGGLWWQRFHGGK 193

Query: 61  LKHTRGHLVELMNSNNILISNLTFRNSPFWTIHPVYCRNVVIKGMTILAPLNAPNTDGID 120
           LK+TR +L+ELM S +I ISNLT  NSP W +HPVY RN++I+G+TILAP+ +PNTDGI+
Sbjct: 194 LKYTRPYLIELMYSADIQISNLTLLNSPSWNVHPVYSRNILIQGITILAPVRSPNTDGIN 253

Query: 121 PDSSTNVCIEDCYIESGDDLVAVKSGWDHYGIAMARPSSNIIVRRVSGTTPTCSGVGIGS 180
           PDS TN  IEDCYI SGDD VAVKSGWD YGIA   P+  +++RR++  +P  + + +GS
Sbjct: 254 PDSCTNTRIEDCYIVSGDDCVAVKSGWDEYGIAYGMPTKQLVIRRLTCISPYSAVIALGS 313

Query: 181 EMSGGIFNVTVDQLHVWDAAAGVRIKTDKGRGGYIENITIRNIKMERVKIPIRISRGSND 240
           EMSGGI +V  + +   ++ +G+RIKT  GRGGY+++I +R + M+ +K    ++     
Sbjct: 314 EMSGGIQDVRAEDIVAINSESGIRIKTGIGRGGYVKDIYVRGMTMKTMKWAFWMTGNYGS 373

Query: 241 HPDEGWDPKALPKIRGISFVNVVSVNTTKAPVLAGIIGTQFEEICMKNVSLLGLAPSAK- 299
           H D  +DPKA P I+GI++ ++V+ N + A  L GI    F  IC+ NV+ + LA  AK 
Sbjct: 374 HADNHYDPKAFPVIQGINYRDMVAENVSMAARLEGIPSDPFTGICISNVT-IHLAAKAKK 432

Query: 300 --WQCQFVSGFTSQVFPLPCPQLQNK---SSSWCSF 330
             W C  V G +S V P PC  L ++    +S C+F
Sbjct: 433 VPWTCTDVEGISSGVTPTPCSTLPDQGPEKTSLCNF 468

Vitis vinifera (taxid: 29760)
EC: 3EC: .EC: 2EC: .EC: 1EC: .EC: 1EC: 5
>sp|P18192|PGLR1_PECCC Endo-polygalacturonase OS=Pectobacterium carotovorum subsp. carotovorum GN=peh PE=3 SV=1 Back     alignment and function description
>sp|P26509|PGLR2_PECSS Endo-polygalacturonase OS=Pectobacterium sp. (strain SCC3193) GN=pehA PE=1 SV=1 Back     alignment and function description
>sp|Q9LW07|PGLR3_ARATH Probable polygalacturonase At3g15720 OS=Arabidopsis thaliana GN=At3g15720 PE=1 SV=1 Back     alignment and function description
>sp|Q94AJ5|PGLR5_ARATH Probable polygalacturonase At1g80170 OS=Arabidopsis thaliana GN=At1g80170 PE=1 SV=1 Back     alignment and function description
>sp|Q9FY19|PGLR2_JUNAS Polygalacturonase OS=Juniperus ashei GN=JNA2 PE=1 SV=1 Back     alignment and function description
>sp|Q7M1E7|PGLR2_CHAOB Polygalacturonase OS=Chamaecyparis obtusa PE=1 SV=1 Back     alignment and function description
>sp|P27644|PGLR_RHIRD Polygalacturonase OS=Rhizobium radiobacter GN=pgl PE=2 SV=1 Back     alignment and function description
>sp|P05117|PGLR_SOLLC Polygalacturonase-2 OS=Solanum lycopersicum GN=PG2 PE=1 SV=1 Back     alignment and function description
>sp|Q02096|PGLR_PERAE Polygalacturonase OS=Persea americana PE=2 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query331
296088539 528 unnamed protein product [Vitis vinifera] 0.990 0.621 0.820 1e-153
225431447 488 PREDICTED: probable polygalacturonase [V 0.990 0.672 0.820 1e-153
224096000 445 predicted protein [Populus trichocarpa] 0.993 0.739 0.815 1e-153
255571381 480 polygalacturonase, putative [Ricinus com 0.993 0.685 0.815 1e-151
147776708 479 hypothetical protein VITISV_043959 [Viti 0.984 0.680 0.806 1e-150
356516364 477 PREDICTED: probable polygalacturonase-li 0.993 0.689 0.775 1e-148
449459262 472 PREDICTED: probable polygalacturonase-li 0.990 0.694 0.784 1e-148
224083446394 predicted protein [Populus trichocarpa] 0.963 0.809 0.818 1e-148
357464681 775 Germin-like protein [Medicago truncatula 0.990 0.423 0.765 1e-148
22329119 475 glycoside hydrolase family 28 protein / 0.996 0.694 0.75 1e-143
>gi|296088539|emb|CBI37530.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
 Score =  546 bits (1407), Expect = e-153,   Method: Compositional matrix adjust.
 Identities = 270/329 (82%), Positives = 302/329 (91%), Gaps = 1/329 (0%)

Query: 1   MDEWPIIDPLPSYGRGRERLGGRHISLIHGDHLTNVIITGYNGTIDGQGQMWWDLWWNRT 60
           +++WPII+PLPSYGRGRERLGGRHISLIHGD L NV+ITG NGTIDGQG+MWW+LWWNRT
Sbjct: 148 LEDWPIIEPLPSYGRGRERLGGRHISLIHGDALANVVITGQNGTIDGQGKMWWELWWNRT 207

Query: 61  LKHTRGHLVELMNSNNILISNLTFRNSPFWTIHPVYCRNVVIKGMTILAPLNAPNTDGID 120
           L+HTRGHL+E+ NS+NILISNLTF NSPFWTIHPVYC NVVIK +TILAPLNAPNTDGID
Sbjct: 208 LEHTRGHLLEIKNSHNILISNLTFMNSPFWTIHPVYCSNVVIKDVTILAPLNAPNTDGID 267

Query: 121 PDSSTNVCIEDCYIESGDDLVAVKSGWDHYGIAMARPSSNIIVRRVSGTTPTCSGVGIGS 180
           PDSSTNVCIEDCYIESGDDLVAVKSGWD YGIAMARPSSNIIVRR+SGTTPTCSGVGIGS
Sbjct: 268 PDSSTNVCIEDCYIESGDDLVAVKSGWDQYGIAMARPSSNIIVRRLSGTTPTCSGVGIGS 327

Query: 181 EMSGGIFNVTVDQLHVWDAAAGVRIKTDKGRGGYIENITIRNIKMERVKIPIRISRGSND 240
           EMSGGI NVT++ LH+WD+AAGVRIKTDKGRGGY+ NITI NI+MERVK+PIR SRGSND
Sbjct: 328 EMSGGISNVTMEDLHIWDSAAGVRIKTDKGRGGYVVNITINNIRMERVKVPIRFSRGSND 387

Query: 241 HPDEGWDPKALPKIRGISFVNVVSVNTTKAPVLAGIIGTQFEEICMKNVSLLGLAPSAKW 300
           HPD+GWDPKA+PKI+GI   NVVS+N+TKAP+L GI G  +E ICMKNV+LLGLAP+AKW
Sbjct: 388 HPDDGWDPKAVPKIKGIFISNVVSLNSTKAPLLEGIEGAPYEGICMKNVTLLGLAPAAKW 447

Query: 301 QCQFVSGFTSQVFPLPCPQLQ-NKSSSWC 328
            C+FVSGFT  VFP+ CPQ+Q N SSSWC
Sbjct: 448 HCEFVSGFTDAVFPVSCPQMQSNVSSSWC 476

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|225431447|ref|XP_002274138.1| PREDICTED: probable polygalacturonase [Vitis vinifera] Back     alignment and taxonomy information
>gi|224096000|ref|XP_002310517.1| predicted protein [Populus trichocarpa] gi|222853420|gb|EEE90967.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|255571381|ref|XP_002526639.1| polygalacturonase, putative [Ricinus communis] gi|223534031|gb|EEF35751.1| polygalacturonase, putative [Ricinus communis] Back     alignment and taxonomy information
>gi|147776708|emb|CAN76963.1| hypothetical protein VITISV_043959 [Vitis vinifera] Back     alignment and taxonomy information
>gi|356516364|ref|XP_003526865.1| PREDICTED: probable polygalacturonase-like [Glycine max] Back     alignment and taxonomy information
>gi|449459262|ref|XP_004147365.1| PREDICTED: probable polygalacturonase-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|224083446|ref|XP_002307030.1| predicted protein [Populus trichocarpa] gi|222856479|gb|EEE94026.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|357464681|ref|XP_003602622.1| Germin-like protein [Medicago truncatula] gi|355491670|gb|AES72873.1| Germin-like protein [Medicago truncatula] Back     alignment and taxonomy information
>gi|22329119|ref|NP_195070.2| glycoside hydrolase family 28 protein / polygalacturonase (pectinase) family protein [Arabidopsis thaliana] gi|27754320|gb|AAO22613.1| putative polygalacturonase [Arabidopsis thaliana] gi|28393881|gb|AAO42348.1| putative polygalacturonase [Arabidopsis thaliana] gi|332660825|gb|AEE86225.1| glycoside hydrolase family 28 protein / polygalacturonase (pectinase) family protein [Arabidopsis thaliana] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query331
TAIR|locus:2119156475 AT4G33440 [Arabidopsis thalian 0.996 0.694 0.725 2.1e-139
TAIR|locus:2098038471 AT3G62110 [Arabidopsis thalian 0.966 0.679 0.551 2e-95
TAIR|locus:2128524444 AT4G23820 [Arabidopsis thalian 0.981 0.731 0.536 1.1e-94
TAIR|locus:2152980449 AT5G41870 [Arabidopsis thalian 0.960 0.708 0.520 9.3e-91
TAIR|locus:2117964495 AT4G23500 [Arabidopsis thalian 0.969 0.648 0.482 9.4e-82
TAIR|locus:2101313469 AT3G48950 [Arabidopsis thalian 0.972 0.686 0.477 6.6e-81
TAIR|locus:2202170506 AT1G19170 [Arabidopsis thalian 0.933 0.610 0.490 2.2e-80
TAIR|locus:2082787476 AT3G61490 [Arabidopsis thalian 0.981 0.682 0.458 2e-79
TAIR|locus:2061396477 AT2G23900 [Arabidopsis thalian 0.987 0.685 0.438 3.9e-76
TAIR|locus:2078531484 AT3G42950 [Arabidopsis thalian 0.942 0.644 0.449 4.5e-75
TAIR|locus:2119156 AT4G33440 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 1364 (485.2 bits), Expect = 2.1e-139, P = 2.1e-139
 Identities = 241/332 (72%), Positives = 284/332 (85%)

Query:     1 MDEWPIIDPLPSYGRGRERLGGRHISLIHGDHLTNVIITGYNGTIDGQGQMWWDLWWNRT 60
             +DEWPII+PLPSYGRGRER GGRHISLIHGD+LTNV+ITG NGTIDGQG+MWW+LWWNRT
Sbjct:   143 LDEWPIIEPLPSYGRGRERPGGRHISLIHGDNLTNVVITGENGTIDGQGKMWWELWWNRT 202

Query:    61 LKHTRGHLVELMXXXXXXXXXXTFRNSPFWTIHPVYCRNVVIKGMTILAPLNAPNTDGID 120
             L HTRGHL+EL           T  NSPFWTIHPVYC NVVI+ MTILAP+NAPNTDGID
Sbjct:   203 LVHTRGHLIELKNSHNILISNLTLLNSPFWTIHPVYCSNVVIRNMTILAPMNAPNTDGID 262

Query:   121 PDSSTNVCIEDCYIESGDDLVAVKSGWDHYGIAMARPSSNIIVRRVSGTTPTCSGVGIGS 180
             PDSSTNVCIEDCYIESGDDLVAVKSGWD YG+A+ARPSSNI++RR+SGTT TCSGVGIGS
Sbjct:   263 PDSSTNVCIEDCYIESGDDLVAVKSGWDQYGMAVARPSSNIVIRRISGTTRTCSGVGIGS 322

Query:   181 EMSGGIFNVTVDQLHVWDAAAGVRIKTDKGRGGYIENITIRNIKMERVKIPIRISRGSND 240
             EMSGGIFN+TV+ +HVWD+AAG+RIKTDKGRGGYI NIT  N+ +E+VK+PIR S GSND
Sbjct:   323 EMSGGIFNITVEDIHVWDSAAGLRIKTDKGRGGYISNITFNNVLLEKVKVPIRFSSGSND 382

Query:   241 HPDEGWDPKALPKIRGISFVNVVSVNTTKAPVLAGIIGTQFEEICMKNVSLLGLAPSAKW 300
             H D+ WDPKALP+++GI   NVVS+N+ KAP+L G+ GT F+++C++NV+LLGL  + KW
Sbjct:   383 HSDDKWDPKALPRVKGIYISNVVSLNSRKAPMLLGVEGTSFQDVCLRNVTLLGLPKTEKW 442

Query:   301 QCQFVSGFTSQVFPLPCPQL-QNKSS-SWCSF 330
             +C+ VSG+ S VFPL CPQL Q K S + CS+
Sbjct:   443 KCKDVSGYASDVFPLSCPQLLQKKGSIAQCSY 474
GO:0004650 "polygalacturonase activity" evidence=IEA;ISS
GO:0005975 "carbohydrate metabolic process" evidence=IEA;ISS
TAIR|locus:2098038 AT3G62110 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2128524 AT4G23820 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2152980 AT5G41870 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2117964 AT4G23500 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2101313 AT3G48950 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2202170 AT1G19170 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2082787 AT3G61490 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2061396 AT2G23900 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2078531 AT3G42950 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

Prediction LevelEC numberConfidence of Prediction
3rd Layer3.2.1LOW CONFIDENCE prediction!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
gw1.VII.1454.1
hypothetical protein (420 aa)
(Populus trichocarpa)
Predicted Functional Partners:
 
Sorry, there are no predicted associations at the current settings.
 

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query331
COG5434542 COG5434, PGU1, Endopygalactorunase [Cell envelope 1e-41
pfam00295325 pfam00295, Glyco_hydro_28, Glycosyl hydrolases fam 9e-36
PLN03003456 PLN03003, PLN03003, Probable polygalacturonase At3 3e-25
PLN02793443 PLN02793, PLN02793, Probable polygalacturonase 3e-23
PLN03010409 PLN03010, PLN03010, polygalacturonase 3e-20
PLN02218431 PLN02218, PLN02218, polygalacturonase ADPG 4e-20
PLN02188404 PLN02188, PLN02188, polygalacturonase/glycoside hy 9e-17
PLN02155394 PLN02155, PLN02155, polygalacturonase 3e-11
>gnl|CDD|227721 COG5434, PGU1, Endopygalactorunase [Cell envelope biogenesis, outer membrane] Back     alignment and domain information 
 Score =  151 bits (383), Expect = 1e-41
 Identities = 82/225 (36%), Positives = 112/225 (49%), Gaps = 14/225 (6%)

Query: 35  NVIITGYNGTIDGQGQMWWDLWWNR--------TLKHTRGHLVELMNSNNILISNLTFRN 86
           N       GTIDG G    D W++           K  R   V L    N+L+  L  +N
Sbjct: 199 NRKEIWGKGTIDGNGYKRGDKWFSGLGAVETRIGGKGVRPRTVVLKGCRNVLLEGLNIKN 258

Query: 87  SPFWTIHPVYCRNVVIKGMTILAPLNAPNTDGIDPDSSTNVCIEDCYIESGDDLVAVKSG 146
           SP WT+HPV C N+  + +TI A     NTDG DP S +NV IE C  ++GDD +A+KSG
Sbjct: 259 SPLWTVHPVDCDNLTFRNLTIDANRFD-NTDGFDPGSCSNVLIEGCRFDTGDDCIAIKSG 317

Query: 147 WDHYGIAMARPSSNIIVR--RVSGTTPTCSGVGIGSEMSGGIFNVTVDQLHVWDAAAGVR 204
               G     PS NI++R    S       G+ +GSEM GG+ N+TV+   + +   G+R
Sbjct: 318 AGLDGKKGYGPSRNIVIRNCYFSSGH---GGLVLGSEMGGGVQNITVEDCVMDNTDRGLR 374

Query: 205 IKTDKGRGGYIENITIRNIKMERVKIPIRISRGSNDHPDEGWDPK 249
           IKT+ GRGG + NI   + KM  VK  + I++G            
Sbjct: 375 IKTNDGRGGGVRNIVFEDNKMRNVKTKLSINKGQITFSIVDRGGL 419

Length = 542
>gnl|CDD|215843 pfam00295, Glyco_hydro_28, Glycosyl hydrolases family 28 Back     alignment and domain information
>gnl|CDD|178580 PLN03003, PLN03003, Probable polygalacturonase At3g15720 Back     alignment and domain information
>gnl|CDD|215426 PLN02793, PLN02793, Probable polygalacturonase Back     alignment and domain information
>gnl|CDD|215540 PLN03010, PLN03010, polygalacturonase Back     alignment and domain information
>gnl|CDD|177865 PLN02218, PLN02218, polygalacturonase ADPG Back     alignment and domain information
>gnl|CDD|215120 PLN02188, PLN02188, polygalacturonase/glycoside hydrolase family protein Back     alignment and domain information
>gnl|CDD|165802 PLN02155, PLN02155, polygalacturonase Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 331
PLN03003456 Probable polygalacturonase At3g15720 100.0
PLN02793443 Probable polygalacturonase 100.0
PLN02155394 polygalacturonase 100.0
PLN02188404 polygalacturonase/glycoside hydrolase family prote 100.0
PLN02218431 polygalacturonase ADPG 100.0
PLN03010409 polygalacturonase 100.0
PF00295326 Glyco_hydro_28: Glycosyl hydrolases family 28; Int 100.0
COG5434542 PGU1 Endopygalactorunase [Cell envelope biogenesis 100.0
PLN02793443 Probable polygalacturonase 99.9
PF00295326 Glyco_hydro_28: Glycosyl hydrolases family 28; Int 99.9
PLN02218431 polygalacturonase ADPG 99.9
PLN02155394 polygalacturonase 99.89
PLN02188404 polygalacturonase/glycoside hydrolase family prote 99.89
PLN03003456 Probable polygalacturonase At3g15720 99.87
PLN03010409 polygalacturonase 99.84
PF03718582 Glyco_hydro_49: Glycosyl hydrolase family 49; Inte 99.73
COG5434542 PGU1 Endopygalactorunase [Cell envelope biogenesis 99.63
TIGR03805314 beta_helix_1 parallel beta-helix repeat-containing 99.21
TIGR03808455 RR_plus_rpt_1 twin-arg-translocated uncharacterize 99.11
PF12541277 DUF3737: Protein of unknown function (DUF3737) ; I 98.89
TIGR03805314 beta_helix_1 parallel beta-helix repeat-containing 98.81
PF12541277 DUF3737: Protein of unknown function (DUF3737) ; I 98.75
PF13229158 Beta_helix: Right handed beta helix region; PDB: 2 98.58
TIGR03808455 RR_plus_rpt_1 twin-arg-translocated uncharacterize 98.46
smart00656190 Amb_all Amb_all domain. 98.3
PF13229158 Beta_helix: Right handed beta helix region; PDB: 2 98.29
PF03718582 Glyco_hydro_49: Glycosyl hydrolase family 49; Inte 98.26
PF05048236 NosD: Periplasmic copper-binding protein (NosD); I 98.22
PF05048236 NosD: Periplasmic copper-binding protein (NosD); I 98.11
COG3866345 PelB Pectate lyase [Carbohydrate transport and met 97.97
COG3866345 PelB Pectate lyase [Carbohydrate transport and met 97.9
smart00656190 Amb_all Amb_all domain. 97.85
PF12708225 Pectate_lyase_3: Pectate lyase superfamily protein 97.79
PF00544200 Pec_lyase_C: Pectate lyase; InterPro: IPR002022 Pe 97.79
PF12708225 Pectate_lyase_3: Pectate lyase superfamily protein 97.7
PF00544200 Pec_lyase_C: Pectate lyase; InterPro: IPR002022 Pe 97.26
COG3420408 NosD Nitrous oxidase accessory protein [Inorganic 96.4
PLN02480343 Probable pectinesterase 96.03
COG3420408 NosD Nitrous oxidase accessory protein [Inorganic 94.57
PLN02773317 pectinesterase 93.68
PLN02773317 pectinesterase 92.92
PF01696386 Adeno_E1B_55K: Adenovirus EB1 55K protein / large 91.63
PLN02506537 putative pectinesterase/pectinesterase inhibitor 91.35
PLN02170529 probable pectinesterase/pectinesterase inhibitor 90.79
PLN02468565 putative pectinesterase/pectinesterase inhibitor 90.64
PF07602246 DUF1565: Protein of unknown function (DUF1565); In 90.28
PLN02682369 pectinesterase family protein 90.12
PLN02745596 Putative pectinesterase/pectinesterase inhibitor 89.73
PLN02995539 Probable pectinesterase/pectinesterase inhibitor 89.38
PLN02480343 Probable pectinesterase 89.37
PLN02916502 pectinesterase family protein 89.05
PLN02314586 pectinesterase 88.99
PLN02634359 probable pectinesterase 88.82
PLN02217670 probable pectinesterase/pectinesterase inhibitor 88.79
PLN02933530 Probable pectinesterase/pectinesterase inhibitor 88.71
PLN02665366 pectinesterase family protein 88.61
PLN02708553 Probable pectinesterase/pectinesterase inhibitor 88.51
PLN02301548 pectinesterase/pectinesterase inhibitor 88.3
PLN02713566 Probable pectinesterase/pectinesterase inhibitor 88.16
PLN02708553 Probable pectinesterase/pectinesterase inhibitor 88.09
PLN02201520 probable pectinesterase/pectinesterase inhibitor 87.76
PLN02416541 probable pectinesterase/pectinesterase inhibitor 87.76
PLN02484587 probable pectinesterase/pectinesterase inhibitor 87.48
PLN02313587 Pectinesterase/pectinesterase inhibitor 87.17
PLN02682369 pectinesterase family protein 86.99
PRK10123464 wcaM putative colanic acid biosynthesis protein; P 86.7
PLN03043538 Probable pectinesterase/pectinesterase inhibitor; 86.44
PLN02990572 Probable pectinesterase/pectinesterase inhibitor 86.42
PRK10531422 acyl-CoA thioesterase; Provisional 85.79
PRK10123 464 wcaM putative colanic acid biosynthesis protein; P 85.58
PF03211215 Pectate_lyase: Pectate lyase; InterPro: IPR004898 85.5
PLN02197588 pectinesterase 85.12
PLN02432293 putative pectinesterase 84.95
PF01696386 Adeno_E1B_55K: Adenovirus EB1 55K protein / large 84.58
PLN02916502 pectinesterase family protein 84.48
PLN02634359 probable pectinesterase 84.27
PLN02432293 putative pectinesterase 84.12
PLN02497331 probable pectinesterase 84.03
PLN02665366 pectinesterase family protein 83.98
PLN02170529 probable pectinesterase/pectinesterase inhibitor 83.36
PLN02671359 pectinesterase 82.78
TIGR0380444 para_beta_helix parallel beta-helix repeat (two co 82.68
PRK10531422 acyl-CoA thioesterase; Provisional 82.57
PLN02304379 probable pectinesterase 82.52
PLN02698497 Probable pectinesterase/pectinesterase inhibitor 81.8
PLN02506537 putative pectinesterase/pectinesterase inhibitor 81.52
PLN02671359 pectinesterase 81.41
PF09251549 PhageP22-tail: Salmonella phage P22 tail-spike; In 81.32
PLN02713566 Probable pectinesterase/pectinesterase inhibitor 80.48
PF01095298 Pectinesterase: Pectinesterase; InterPro: IPR00007 80.39
>PLN03003 Probable polygalacturonase At3g15720 Back     alignment and domain information 
Probab=100.00  E-value=5.5e-57  Score=435.66  Aligned_cols=279  Identities=31%  Similarity=0.485  Sum_probs=249.3

Q ss_pred             eeeEEEeceeeeEEEeCCeEEEcCCchhhcccccCCCCCCCceEEEEEeeccEEEeceEEeCCCceEEeEEeeEcEEEEe
Q 020062           25 ISLIHGDHLTNVIITGYNGTIDGQGQMWWDLWWNRTLKHTRGHLVELMNSNNILISNLTFRNSPFWTIHPVYCRNVVIKG  104 (331)
Q Consensus        25 ~~lI~~~~~~nV~I~G~~G~IdG~g~~~w~~~~~~~~~~~rp~~i~~~~~~nv~i~giti~n~~~~~i~~~~s~nV~i~n  104 (331)
                      ..||+|.+++|++|+|. |+|||+|+.||..      ...||++|+|.+|+|++|+||+++|+|.|++++..|++|+|++
T Consensus       104 ~~wI~f~~~~~i~I~G~-GtIDGqG~~wW~~------~~~rP~~l~f~~~~nv~I~gitl~NSp~w~i~i~~c~nV~i~~  176 (456)
T PLN03003        104 DQWILFTDIEGLVIEGD-GEINGQGSSWWEH------KGSRPTALKFRSCNNLRLSGLTHLDSPMAHIHISECNYVTISS  176 (456)
T ss_pred             cceEEEEcccceEEecc-ceEeCCchhhhhc------ccCCceEEEEEecCCcEEeCeEEecCCcEEEEEeccccEEEEE
Confidence            46999999999999998 9999999999974      2469999999999999999999999999999999999999999


Q ss_pred             EEEECCCCCCCCCccccCCCccEEEEeeEEeeCCceEEEccCCCccCcccCCCcccEEEEEEEEeCCCCCEEEEecccc-
Q 020062          105 MTILAPLNAPNTDGIDPDSSTNVCIEDCYIESGDDLVAVKSGWDHYGIAMARPSSNIIVRRVSGTTPTCSGVGIGSEMS-  183 (331)
Q Consensus       105 ~~i~~~~~~~n~DGi~~~~s~nV~I~n~~i~~gDD~iai~s~~~~~g~~~~~~~~nI~i~nc~~~~~~~~gi~iGs~~~-  183 (331)
                      ++|.++.+.+|+||||+.+|+||+|+||+|.+|||||++|++           ++||+|+||.|..  +|||+|||++. 
T Consensus       177 l~I~ap~~spNTDGIDi~~S~nV~I~n~~I~tGDDCIaiksg-----------s~NI~I~n~~c~~--GHGISIGSlg~~  243 (456)
T PLN03003        177 LRINAPESSPNTDGIDVGASSNVVIQDCIIATGDDCIAINSG-----------TSNIHISGIDCGP--GHGISIGSLGKD  243 (456)
T ss_pred             EEEeCCCCCCCCCcEeecCcceEEEEecEEecCCCeEEeCCC-----------CccEEEEeeEEEC--CCCeEEeeccCC
Confidence            999998889999999999999999999999999999999986           7999999999964  69999999964 


Q ss_pred             ---CCEEEEEEEeeEEeCCCceEEEEEecCCCceEEeEEEEEEEEccccccEEEEccCCCCC-CCCC-CCCCCCeEeeEE
Q 020062          184 ---GGIFNVTVDQLHVWDAAAGVRIKTDKGRGGYIENITIRNIKMERVKIPIRISRGSNDHP-DEGW-DPKALPKIRGIS  258 (331)
Q Consensus       184 ---g~i~nI~~~n~~i~~~~~gi~Ik~~~g~~g~i~nV~f~nI~~~~~~~~i~i~~~y~~~~-~~~~-~~~~~~~i~nIt  258 (331)
                         +.|+||+|+||++.++.+|+|||+++|++|.|+||+|+||+|+++..||.|++.|...+ ...+ .+...+.|+||+
T Consensus       244 g~~~~V~NV~v~n~~~~~T~nGvRIKT~~Gg~G~v~nItf~nI~m~nV~~pI~Idq~Y~~~~~~~~~~~~~s~v~IsnI~  323 (456)
T PLN03003        244 GETATVENVCVQNCNFRGTMNGARIKTWQGGSGYARMITFNGITLDNVENPIIIDQFYNGGDSDNAKDRKSSAVEVSKVV  323 (456)
T ss_pred             CCcceEEEEEEEeeEEECCCcEEEEEEeCCCCeEEEEEEEEeEEecCccceEEEEcccCCCCCCCcccCCCCCcEEEeEE
Confidence               45999999999999999999999999888999999999999999999999999997532 2111 233457999999


Q ss_pred             EEEEEEecCC-cceEEEecCCCCeeeEEEEeEEEEecC-C---CCceEEEeeeeecccccC-CCCCCCCCC
Q 020062          259 FVNVVSVNTT-KAPVLAGIIGTQFEEICMKNVSLLGLA-P---SAKWQCQFVSGFTSQVFP-LPCPQLQNK  323 (331)
Q Consensus       259 ~~NI~~~~~~-~~~~i~g~~~~~i~~I~~~NV~i~~~~-~---~~~~~c~~v~g~~~~~~p-~~c~~~~~~  323 (331)
                      |+||+++... .++.|.|.++.||++|+|+||.++... +   .+.+.|.|+.|....+.| .+|+++...
T Consensus       324 f~NI~GTs~~~~ai~l~Cs~~~PC~nI~l~ni~l~~~~~g~~~~~~~~C~Nv~G~~~~~~~~~~C~~~~~~  394 (456)
T PLN03003        324 FSNFIGTSKSEYGVDFRCSERVPCTEIFLRDMKIETASSGSGQVAQGQCLNVRGASTIAVPGLECLELSTD  394 (456)
T ss_pred             EEeEEEEeCccceEEEEeCCCCCeeeEEEEEEEEEecCCCCCCccCcEEeccccccCceECCCCccccCCC
Confidence            9999998654 578899999999999999999999762 2   358999999999887744 579987654

>PLN02793 Probable polygalacturonase Back     alignment and domain information
>PLN02155 polygalacturonase Back     alignment and domain information
>PLN02188 polygalacturonase/glycoside hydrolase family protein Back     alignment and domain information
>PLN02218 polygalacturonase ADPG Back     alignment and domain information
>PLN03010 polygalacturonase Back     alignment and domain information
>PF00295 Glyco_hydro_28: Glycosyl hydrolases family 28; InterPro: IPR000743 O-Glycosyl hydrolases 3 Back     alignment and domain information
>COG5434 PGU1 Endopygalactorunase [Cell envelope biogenesis, outer membrane] Back     alignment and domain information
>PLN02793 Probable polygalacturonase Back     alignment and domain information
>PF00295 Glyco_hydro_28: Glycosyl hydrolases family 28; InterPro: IPR000743 O-Glycosyl hydrolases 3 Back     alignment and domain information
>PLN02218 polygalacturonase ADPG Back     alignment and domain information
>PLN02155 polygalacturonase Back     alignment and domain information
>PLN02188 polygalacturonase/glycoside hydrolase family protein Back     alignment and domain information
>PLN03003 Probable polygalacturonase At3g15720 Back     alignment and domain information
>PLN03010 polygalacturonase Back     alignment and domain information
>PF03718 Glyco_hydro_49: Glycosyl hydrolase family 49; InterPro: IPR005192 O-Glycosyl hydrolases 3 Back     alignment and domain information
>COG5434 PGU1 Endopygalactorunase [Cell envelope biogenesis, outer membrane] Back     alignment and domain information
>TIGR03805 beta_helix_1 parallel beta-helix repeat-containing protein Back     alignment and domain information
>TIGR03808 RR_plus_rpt_1 twin-arg-translocated uncharacterized repeat protein Back     alignment and domain information
>PF12541 DUF3737: Protein of unknown function (DUF3737) ; InterPro: IPR022208 This family of proteins is found in bacteria, archaea and eukaryotes Back     alignment and domain information
>TIGR03805 beta_helix_1 parallel beta-helix repeat-containing protein Back     alignment and domain information
>PF12541 DUF3737: Protein of unknown function (DUF3737) ; InterPro: IPR022208 This family of proteins is found in bacteria, archaea and eukaryotes Back     alignment and domain information
>PF13229 Beta_helix: Right handed beta helix region; PDB: 2INV_C 2INU_C 1RU4_A Back     alignment and domain information
>TIGR03808 RR_plus_rpt_1 twin-arg-translocated uncharacterized repeat protein Back     alignment and domain information
>smart00656 Amb_all Amb_all domain Back     alignment and domain information
>PF13229 Beta_helix: Right handed beta helix region; PDB: 2INV_C 2INU_C 1RU4_A Back     alignment and domain information
>PF03718 Glyco_hydro_49: Glycosyl hydrolase family 49; InterPro: IPR005192 O-Glycosyl hydrolases 3 Back     alignment and domain information
>PF05048 NosD: Periplasmic copper-binding protein (NosD); InterPro: IPR007742 Bacterial nitrous oxide (N(2)O) reductase is the terminal oxidoreductase of a respiratory process that generates dinitrogen from N(2)O Back     alignment and domain information
>PF05048 NosD: Periplasmic copper-binding protein (NosD); InterPro: IPR007742 Bacterial nitrous oxide (N(2)O) reductase is the terminal oxidoreductase of a respiratory process that generates dinitrogen from N(2)O Back     alignment and domain information
>COG3866 PelB Pectate lyase [Carbohydrate transport and metabolism] Back     alignment and domain information
>COG3866 PelB Pectate lyase [Carbohydrate transport and metabolism] Back     alignment and domain information
>smart00656 Amb_all Amb_all domain Back     alignment and domain information
>PF12708 Pectate_lyase_3: Pectate lyase superfamily protein; PDB: 3EQN_A 3EQO_A 2PYG_A 2PYH_A 3SUC_A 3GQ7_A 3GQ9_A 3GQA_A 3GQ8_A 2VBE_A Back     alignment and domain information
>PF00544 Pec_lyase_C: Pectate lyase; InterPro: IPR002022 Pectate lyase 4 Back     alignment and domain information
>PF12708 Pectate_lyase_3: Pectate lyase superfamily protein; PDB: 3EQN_A 3EQO_A 2PYG_A 2PYH_A 3SUC_A 3GQ7_A 3GQ9_A 3GQA_A 3GQ8_A 2VBE_A Back     alignment and domain information
>PF00544 Pec_lyase_C: Pectate lyase; InterPro: IPR002022 Pectate lyase 4 Back     alignment and domain information
>COG3420 NosD Nitrous oxidase accessory protein [Inorganic ion transport and metabolism] Back     alignment and domain information
>PLN02480 Probable pectinesterase Back     alignment and domain information
>COG3420 NosD Nitrous oxidase accessory protein [Inorganic ion transport and metabolism] Back     alignment and domain information
>PLN02773 pectinesterase Back     alignment and domain information
>PLN02773 pectinesterase Back     alignment and domain information
>PF01696 Adeno_E1B_55K: Adenovirus EB1 55K protein / large t-antigen; InterPro: IPR002612 This family consists of adenovirus E1B 55 kDa protein or large t-antigen Back     alignment and domain information
>PLN02506 putative pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02170 probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02468 putative pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PF07602 DUF1565: Protein of unknown function (DUF1565); InterPro: IPR011459 These proteins share a region of homology in their N termini, and are found in several phylogenetically diverse bacteria and in the archaeon Methanosarcina acetivorans Back     alignment and domain information
>PLN02682 pectinesterase family protein Back     alignment and domain information
>PLN02745 Putative pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02995 Probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02480 Probable pectinesterase Back     alignment and domain information
>PLN02916 pectinesterase family protein Back     alignment and domain information
>PLN02314 pectinesterase Back     alignment and domain information
>PLN02634 probable pectinesterase Back     alignment and domain information
>PLN02217 probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02933 Probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02665 pectinesterase family protein Back     alignment and domain information
>PLN02708 Probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02301 pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02713 Probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02708 Probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02201 probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02416 probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02484 probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02313 Pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02682 pectinesterase family protein Back     alignment and domain information
>PRK10123 wcaM putative colanic acid biosynthesis protein; Provisional Back     alignment and domain information
>PLN03043 Probable pectinesterase/pectinesterase inhibitor; Provisional Back     alignment and domain information
>PLN02990 Probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PRK10531 acyl-CoA thioesterase; Provisional Back     alignment and domain information
>PRK10123 wcaM putative colanic acid biosynthesis protein; Provisional Back     alignment and domain information
>PF03211 Pectate_lyase: Pectate lyase; InterPro: IPR004898 Pectate lyase is responsible for the maceration and soft-rotting of plant tissue Back     alignment and domain information
>PLN02197 pectinesterase Back     alignment and domain information
>PLN02432 putative pectinesterase Back     alignment and domain information
>PF01696 Adeno_E1B_55K: Adenovirus EB1 55K protein / large t-antigen; InterPro: IPR002612 This family consists of adenovirus E1B 55 kDa protein or large t-antigen Back     alignment and domain information
>PLN02916 pectinesterase family protein Back     alignment and domain information
>PLN02634 probable pectinesterase Back     alignment and domain information
>PLN02432 putative pectinesterase Back     alignment and domain information
>PLN02497 probable pectinesterase Back     alignment and domain information
>PLN02665 pectinesterase family protein Back     alignment and domain information
>PLN02170 probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02671 pectinesterase Back     alignment and domain information
>TIGR03804 para_beta_helix parallel beta-helix repeat (two copies) Back     alignment and domain information
>PRK10531 acyl-CoA thioesterase; Provisional Back     alignment and domain information
>PLN02304 probable pectinesterase Back     alignment and domain information
>PLN02698 Probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02506 putative pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02671 pectinesterase Back     alignment and domain information
>PF09251 PhageP22-tail: Salmonella phage P22 tail-spike; InterPro: IPR015331 This entry is represented by the Bacteriophage P22, Gp9, tailspike protein (TSP) Back     alignment and domain information
>PLN02713 Probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PF01095 Pectinesterase: Pectinesterase; InterPro: IPR000070 Pectinesterase 3 Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query331
3jur_A448 The Crystal Structure Of A Hyperthermoactive Exopol 2e-24
1bhe_A376 Polygalacturonase From Erwinia Carotovora Ssp. Caro 3e-20
1nhc_A336 Structural Insights Into The Processivity Of Endopo 7e-08
1hg8_A349 Endopolygalacturonase From The Phytopathogenic Fung 8e-08
2iq7_A339 Crystal Structure Of The Polygalacturonase From Col 2e-04
>pdb|3JUR|A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima Length = 448 Back     alignment and structure 
Iteration: 1

 Score =  109 bits (272), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 73/215 (33%), Positives = 111/215 (51%), Gaps = 9/215 (4%)
Query: 86  NSPFWTIHPVYCRNVVIKGMTILAPLNAPNTDGIDPDSSTNVCIEDCYIESGDDLVAVKS 145
           NSP W IHPV   NV+I+ + I +    PN DGIDP+S   + IE C  ++GDD V +KS
Sbjct: 210 NSPMWCIHPVLSENVIIRNIEISS--TGPNNDGIDPESCKYMLIEKCRFDTGDDSVVIKS 267
Query: 146 GWDHYGIAMARPSSNIIVR-RVSGTTPTCSGVGIGSEMSGGIFNVTVDQLHVWDAAAGVR 204
           G D  G  +  PS  I+VR  +  +  +  G+ IGSEMSGG+ NV        +    +R
Sbjct: 268 GRDADGRRIGVPSEYILVRDNLVISQASHGGLVIGSEMSGGVRNVVARNNVYMNVERALR 327
Query: 205 IKTDKGRGGYIENI-TIRNIKMERVKIPIRISRGSNDHPDEGWDPKALPKIRGISFVNVV 263
           +KT+  RGGY+ENI  I N+ +   +  IRI+   ++   E      LP +R +   N+ 
Sbjct: 328 LKTNSRRGGYMENIFFIDNVAVNVSEEVIRINLRYDNEEGE-----YLPVVRSVFVKNLK 382
Query: 264 SVNTTKAPVLAGIIGTQFEEICMKNVSLLGLAPSA 298
           +     A  + G+     ++I + +  + G   S 
Sbjct: 383 ATGGKYAVRIEGLENDYVKDILISDTIIEGAKISV 417
>pdb|1BHE|A Chain A, Polygalacturonase From Erwinia Carotovora Ssp. Carotovora Length = 376 Back     alignment and structure
>pdb|1NHC|A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger Length = 336 Back     alignment and structure
>pdb|1HG8|A Chain A, Endopolygalacturonase From The Phytopathogenic Fungus Fusarium Moniliforme Length = 349 Back     alignment and structure
>pdb|2IQ7|A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins Length = 339 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query331
1bhe_A376 PEHA, polygalacturonase; family 28 glycosyl hydrol 1e-105
3jur_A448 EXO-poly-alpha-D-galacturonosidase; beta-helix, ce 2e-97
2uvf_A608 Exopolygalacturonase; GH28, pectin, cell WALL, hyd 4e-90
1ia5_A339 Polygalacturonase; glycosylhydrolase, hydrolase; H 1e-71
1nhc_A336 Polygalacturonase I; beta-helix, hydrolase; HET: M 3e-70
1hg8_A349 Endopolygalacturonase; hydrolase, pectin degradati 8e-66
2iq7_A339 Endopolygalacturonase; parallel beta helix, hydrol 3e-64
1czf_A362 Polygalacturonase II; beta helix, hydrolase; HET: 6e-64
1rmg_A422 Rgase A, rhamnogalacturonase A; hydrolase, inverti 6e-64
1k5c_A335 Endopolygalacturonase; beta helical structure, gly 1e-55
2x6w_A 600 Tail spike protein; viral protein, beta-helix, hyd 5e-37
1x0c_A549 Isopullulanase; glycoside hydrolase family 49, gly 4e-32
3gq8_A 609 Preneck appendage protein; beta helix, viral prote 1e-30
3gqn_A 772 Preneck appendage protein; beta helix, beta barrel 3e-28
2pyg_A377 Poly(beta-D-mannuronate) C5 epimerase 4; beta-heli 3e-21
1h80_A464 IOTA-carrageenase; hydrolase, IOTA-carrageenan dou 4e-21
1ogo_X574 Dextranase; hydrolase, dextran degradation, glycos 1e-11
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 5e-06
>1bhe_A PEHA, polygalacturonase; family 28 glycosyl hydrolase, hydrolyses polygalacturonic acid, glycosidase; 1.90A {Pectobacterium carotovorum subsp} SCOP: b.80.1.3 Length = 376 Back     alignment and structure
 Score =  312 bits (800), Expect = e-105
 Identities = 95/316 (30%), Positives = 135/316 (42%), Gaps = 33/316 (10%)

Query: 2   DEWPIIDPLPSYGRGRERLGGRHISLIHGDHLTNVIITGYNGTIDGQGQMWWDL----WW 57
             +      PS     ++ G    + I     TN  I G  GTIDGQG +        WW
Sbjct: 80  KSFE---NAPSSCGVVDKNGKGCDAFITAVSTTNSGIYG-PGTIDGQGGVKLQDKKVSWW 135

Query: 58  N-------RTLKHTRGHLVELMNSNNILISNLTFRNSPFWTIHPVYCRNVVIKGMTILAP 110
                   + LK     L+++  S N  + N++  NSP + +             TI  P
Sbjct: 136 ELAADAKVKKLKQNTPRLIQINKSKNFTLYNVSLINSPNFHVVFSDGDGFTAWKTTIKTP 195

Query: 111 LNAPNTDGIDPDSSTNVCIEDCYIESGDDLVAVKSGWDHYGIAMARPSSNIIVRRVSGTT 170
             A NTDGIDP SS N+ I    I +GDD VA+K+            + NI +       
Sbjct: 196 STARNTDGIDPMSSKNITIAYSNIATGDDNVAIKAYKG------RAETRNISILHN--DF 247

Query: 171 PTCSGVGIGSEMSGGIFNVTVDQLHVWDAAAGVRIKTDKGRGGYIENITIRNIKMERVKI 230
            T  G+ IGSE + G++NVTVD L +     G+RIK+DK   G +  +   N+ M+ V  
Sbjct: 248 GTGHGMSIGSE-TMGVYNVTVDDLKMNGTTNGLRIKSDKSAAGVVNGVRYSNVVMKNVAK 306

Query: 231 PIRISRGSNDHPDEGWDPKALPKIRGISFVNVVSVNTTKAPVLAGIIGTQFEEICMKNVS 290
           PI I     D   E  +   +P    I+F +V S       VL G    +  E+ MKNV 
Sbjct: 307 PIVI-----DTVYEKKEGSNVPDWSDITFKDVTSETKG-VVVLNGENAKKPIEVTMKNVK 360

Query: 291 LLGLAPSAKWQCQFVS 306
              L   + WQ + V+
Sbjct: 361 ---LTSDSTWQIKNVN 373
>3jur_A EXO-poly-alpha-D-galacturonosidase; beta-helix, cell WALL biogenesis/degradation, glycosidase; 2.05A {Thermotoga maritima} Length = 448 Back     alignment and structure
>2uvf_A Exopolygalacturonase; GH28, pectin, cell WALL, hydrolase, periplasm, beta-helix, glycosidase, EXO-activity; HET: AD0; 2.1A {Yersinia enterocolitica} PDB: 2uve_A* Length = 608 Back     alignment and structure
>1ia5_A Polygalacturonase; glycosylhydrolase, hydrolase; HET: MAN NAG; 2.00A {Aspergillus aculeatus} SCOP: b.80.1.3 PDB: 1ib4_A* Length = 339 Back     alignment and structure
>1nhc_A Polygalacturonase I; beta-helix, hydrolase; HET: MAN NAG BMA; 1.70A {Aspergillus niger} SCOP: b.80.1.3 Length = 336 Back     alignment and structure
>1hg8_A Endopolygalacturonase; hydrolase, pectin degradation; HET: NAG; 1.73A {Fusarium moniliforme} SCOP: b.80.1.3 Length = 349 Back     alignment and structure
>2iq7_A Endopolygalacturonase; parallel beta helix, hydrolase; HET: NAG MAN PG4; 1.94A {Colletotrichum lupini} Length = 339 Back     alignment and structure
>1czf_A Polygalacturonase II; beta helix, hydrolase; HET: NAG; 1.68A {Aspergillus niger} SCOP: b.80.1.3 Length = 362 Back     alignment and structure
>1rmg_A Rgase A, rhamnogalacturonase A; hydrolase, inverting, parallel beta-helix, glycosidase; HET: NAG BMA MAN GLC; 2.00A {Aspergillus aculeatus} SCOP: b.80.1.3 Length = 422 Back     alignment and structure
>1k5c_A Endopolygalacturonase; beta helical structure, glycoside hydrolase, silver-LEAF IND substance, hydrolase; HET: NAG; 0.96A {Chondrostereum purpureum} SCOP: b.80.1.3 PDB: 1kcc_A* 1kcd_A* Length = 335 Back     alignment and structure
>2x6w_A Tail spike protein; viral protein, beta-helix, hydrolase; HET: RAM GLC GLA NAG NDG; 1.35A {Enterobacteria phage HK620} PDB: 2vji_A 2vjj_A* 2x85_A* 2x6x_A* 2x6y_A* Length = 600 Back     alignment and structure
>1x0c_A Isopullulanase; glycoside hydrolase family 49, glycoprotein, hydro; HET: NAG; 1.70A {Aspergillus niger} PDB: 1wmr_A* 2z8g_A* Length = 549 Back     alignment and structure
>3gq8_A Preneck appendage protein; beta helix, viral protein; HET: NHE; 2.00A {Bacillus phage PHI29} PDB: 3gq7_A* 3gq9_A* 3gqa_A Length = 609 Back     alignment and structure
>2pyg_A Poly(beta-D-mannuronate) C5 epimerase 4; beta-helix, isomerase; 2.10A {Azotobacter vinelandii} PDB: 2pyh_A* Length = 377 Back     alignment and structure
>1h80_A IOTA-carrageenase; hydrolase, IOTA-carrageenan double helix degradation; 1.6A {Alteromonas SP} SCOP: b.80.1.8 PDB: 1ktw_A* 3lmw_A Length = 464 Back     alignment and structure
>1ogo_X Dextranase; hydrolase, dextran degradation, glycosidase; HET: BGC GLC; 1.65A {Penicillium minioluteum} SCOP: b.133.1.1 b.80.1.10 PDB: 1ogm_X* Length = 574 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query331
3jur_A448 EXO-poly-alpha-D-galacturonosidase; beta-helix, ce 100.0
1bhe_A376 PEHA, polygalacturonase; family 28 glycosyl hydrol 100.0
1czf_A362 Polygalacturonase II; beta helix, hydrolase; HET: 100.0
1k5c_A335 Endopolygalacturonase; beta helical structure, gly 100.0
1hg8_A349 Endopolygalacturonase; hydrolase, pectin degradati 100.0
1ia5_A339 Polygalacturonase; glycosylhydrolase, hydrolase; H 100.0
1nhc_A336 Polygalacturonase I; beta-helix, hydrolase; HET: M 100.0
2iq7_A339 Endopolygalacturonase; parallel beta helix, hydrol 100.0
1rmg_A422 Rgase A, rhamnogalacturonase A; hydrolase, inverti 100.0
2uvf_A608 Exopolygalacturonase; GH28, pectin, cell WALL, hyd 100.0
1ogo_X574 Dextranase; hydrolase, dextran degradation, glycos 100.0
1x0c_A549 Isopullulanase; glycoside hydrolase family 49, gly 100.0
2x6w_A 600 Tail spike protein; viral protein, beta-helix, hyd 100.0
3jur_A448 EXO-poly-alpha-D-galacturonosidase; beta-helix, ce 99.96
3gqn_A 772 Preneck appendage protein; beta helix, beta barrel 99.95
3gq8_A 609 Preneck appendage protein; beta helix, viral prote 99.95
2uvf_A608 Exopolygalacturonase; GH28, pectin, cell WALL, hyd 99.95
1h80_A464 IOTA-carrageenase; hydrolase, IOTA-carrageenan dou 99.91
2iq7_A339 Endopolygalacturonase; parallel beta helix, hydrol 99.91
1czf_A362 Polygalacturonase II; beta helix, hydrolase; HET: 99.91
1bhe_A376 PEHA, polygalacturonase; family 28 glycosyl hydrol 99.9
1ia5_A339 Polygalacturonase; glycosylhydrolase, hydrolase; H 99.9
1nhc_A336 Polygalacturonase I; beta-helix, hydrolase; HET: M 99.89
1hg8_A349 Endopolygalacturonase; hydrolase, pectin degradati 99.89
1rmg_A422 Rgase A, rhamnogalacturonase A; hydrolase, inverti 99.89
1k5c_A335 Endopolygalacturonase; beta helical structure, gly 99.87
2vbk_A514 Tailspike-protein; viral adhesion protein, viral p 99.79
1x0c_A549 Isopullulanase; glycoside hydrolase family 49, gly 99.77
1ogo_X574 Dextranase; hydrolase, dextran degradation, glycos 99.77
1h80_A 464 IOTA-carrageenase; hydrolase, IOTA-carrageenan dou 99.64
2pyg_A377 Poly(beta-D-mannuronate) C5 epimerase 4; beta-heli 99.57
3gq8_A 609 Preneck appendage protein; beta helix, viral prote 99.54
3gqn_A 772 Preneck appendage protein; beta helix, beta barrel 99.52
2x6w_A 600 Tail spike protein; viral protein, beta-helix, hyd 99.42
2pyg_A377 Poly(beta-D-mannuronate) C5 epimerase 4; beta-heli 99.34
3eqn_A 758 Glucan 1,3-beta-glucosidase; tandem beta-helix dom 98.57
1pxz_A346 Major pollen allergen JUN A 1; parallel beta-helix 98.34
1pcl_A355 Pectate lyase E; lyase (acting on polysaccharides) 98.32
3vmv_A326 Pectate lyase; polysaccharide lyase family 1, beta 98.25
1air_A353 Pectate lyase C, PELC; pectate cleavage, pectinoly 98.24
1pxz_A346 Major pollen allergen JUN A 1; parallel beta-helix 98.2
1pcl_A355 Pectate lyase E; lyase (acting on polysaccharides) 98.19
3zsc_A340 Pectate trisaccharide-lyase; hydrolase; HET: ADA A 98.11
2qy1_A330 Pectate lyase II; GAG lyase; 1.90A {Xanthomonas ca 98.07
3zsc_A340 Pectate trisaccharide-lyase; hydrolase; HET: ADA A 98.06
1vbl_A416 Pectate lyase 47; PL 47, thermostable, bacillus su 98.02
2o04_A399 Pectate lyase, PL; hexasaccharide compound II, cal 97.91
2qy1_A330 Pectate lyase II; GAG lyase; 1.90A {Xanthomonas ca 97.91
1qcx_A359 Pectin lyase B; beta-helix protein, plant cell WAL 97.91
1idk_A359 Pectin lyase A; signal, glycoprotein, multigene fa 97.9
1ru4_A400 Pectate lyase, PEL9A; parallel beta-helix; 1.60A { 97.85
3eqn_A 758 Glucan 1,3-beta-glucosidase; tandem beta-helix dom 97.85
1pe9_A361 Pectate lyase A; parallel beta helix; 1.60A {Erwin 97.84
1air_A353 Pectate lyase C, PELC; pectate cleavage, pectinoly 97.84
1idk_A359 Pectin lyase A; signal, glycoprotein, multigene fa 97.76
1vbl_A416 Pectate lyase 47; PL 47, thermostable, bacillus su 97.74
2o04_A399 Pectate lyase, PL; hexasaccharide compound II, cal 97.56
2vbk_A514 Tailspike-protein; viral adhesion protein, viral p 97.52
1pe9_A361 Pectate lyase A; parallel beta helix; 1.60A {Erwin 97.45
2inu_A410 Insulin fructotransferase; right-handed parallel b 97.44
1qcx_A359 Pectin lyase B; beta-helix protein, plant cell WAL 97.44
1ru4_A400 Pectate lyase, PEL9A; parallel beta-helix; 1.60A { 97.14
2inu_A410 Insulin fructotransferase; right-handed parallel b 96.85
1xg2_A317 Pectinesterase 1; protein-protein complex, beta he 96.6
3vmv_A326 Pectate lyase; polysaccharide lyase family 1, beta 96.56
1gq8_A319 Pectinesterase; hydrolase, carboxylic ester hydrol 96.11
3uw0_A364 Pectinesterase; right-handed beta-helix, carbohydr 95.47
2nsp_A342 Pectinesterase A; michaelis complex, hydrolase; HE 95.28
3t9g_A196 Pectate lyase; PL3, parallel beta-helix; HET: GOL; 94.2
1gq8_A319 Pectinesterase; hydrolase, carboxylic ester hydrol 94.02
1xg2_A317 Pectinesterase 1; protein-protein complex, beta he 93.48
1dbg_A 506 Chondroitinase B; beta helix, polysaccharide lyase 92.86
2nsp_A342 Pectinesterase A; michaelis complex, hydrolase; HE 91.46
1ee6_A197 Pectate lyase; parallel beta-helix, high-alkaline, 90.37
3t9g_A196 Pectate lyase; PL3, parallel beta-helix; HET: GOL; 88.19
3uw0_A364 Pectinesterase; right-handed beta-helix, carbohydr 86.38
1dbg_A506 Chondroitinase B; beta helix, polysaccharide lyase 84.78
1ee6_A197 Pectate lyase; parallel beta-helix, high-alkaline, 83.08
3riq_A543 Tailspike protein; right handed beta-helix, endorh 82.94
3b4n_A344 Endo-pectate lyase; pectin, galacturonic acid, rig 82.23
>3jur_A EXO-poly-alpha-D-galacturonosidase; beta-helix, cell WALL biogenesis/degradation, glycosidase; 2.05A {Thermotoga maritima} Back     alignment and structure
Probab=100.00  E-value=1.2e-55  Score=431.08  Aligned_cols=288  Identities=31%  Similarity=0.509  Sum_probs=250.0

Q ss_pred             CCC-CcccCCCCCCcccccCCCcceeeEEEeceeeeEEEeCCeEEEcCC--chhhcccccC-------------------
Q 020062            2 DEW-PIIDPLPSYGRGRERLGGRHISLIHGDHLTNVIITGYNGTIDGQG--QMWWDLWWNR-------------------   59 (331)
Q Consensus         2 ~~~-~~~~~~~~~~~~~~~~~~~~~~lI~~~~~~nV~I~G~~G~IdG~g--~~~w~~~~~~-------------------   59 (331)
                      ++| |.+..  .| +|.+.  .++.+||++.+++||+|+|. |+|||+|  +.||......                   
T Consensus        95 ~~y~p~~~~--~~-~G~~~--~~~~~lI~~~~~~ni~ItG~-GtIDG~G~~~~ww~~~~~~~~~~~~~~~~~~~~~~~l~  168 (448)
T 3jur_A           95 ERYLPVVLT--RF-EGIEL--YNYSPLVYALDCENVAITGS-GVLDGSADNEHWWPWKGKKDFGWKEGLPNQQEDVKKLK  168 (448)
T ss_dssp             GGGCSCEEE--EE-TTEEE--EESCCSEEEESCEEEEEESS-CEEECCCBTTBBGGGGCCGGGTCCTTSCCSHHHHHHHH
T ss_pred             HHhCccccc--cc-ccccc--cCccceEEEeCcEeeEEEEe-EEEECCCCchhhhhhcccccccccccccccccchhhhh
Confidence            356 65442  23 34332  35678999999999999998 9999999  8999743210                   


Q ss_pred             ---------------CCCCCCceEEEEEeeccEEEeceEEeCCCceEEeEEeeEcEEEEeEEEECCCCCCCCCccccCCC
Q 020062           60 ---------------TLKHTRGHLVELMNSNNILISNLTFRNSPFWTIHPVYCRNVVIKGMTILAPLNAPNTDGIDPDSS  124 (331)
Q Consensus        60 ---------------~~~~~rp~~i~~~~~~nv~i~giti~n~~~~~i~~~~s~nV~i~n~~i~~~~~~~n~DGi~~~~s  124 (331)
                                     .....||++|.|.+|+|++|+|++++|+|+|++++..|+||+|+|++|.++  ++|+||||+.+|
T Consensus       169 ~~~~~~~p~~~~~~~~~~~~RP~~i~~~~~~nv~i~giti~nsp~~~i~~~~~~nv~i~~v~I~~~--~~NtDGidi~~s  246 (448)
T 3jur_A          169 EMAERGTPVEERVFGKGHYLRPSFVQFYRCRNVLVEGVKIINSPMWCIHPVLSENVIIRNIEISST--GPNNDGIDPESC  246 (448)
T ss_dssp             HHHHHTCCGGGCBCSTTCCCCCCSEEEESCEEEEEESCEEESCSSCSEEEESCEEEEEESCEEEEC--STTCCSBCCBSC
T ss_pred             hhhcccCcchhhhccccccCCceEEEEEcccceEEEeeEEEeCCCceEeeeccCCEEEEeEEEeec--cCCCccccccCC
Confidence                           123579999999999999999999999999999999999999999999996  789999999999


Q ss_pred             ccEEEEeeEEeeCCceEEEccCCCccCcccCCCcccEEEEEEEEeCCCCC-EEEEeccccCCEEEEEEEeeEEeCCCceE
Q 020062          125 TNVCIEDCYIESGDDLVAVKSGWDHYGIAMARPSSNIIVRRVSGTTPTCS-GVGIGSEMSGGIFNVTVDQLHVWDAAAGV  203 (331)
Q Consensus       125 ~nV~I~n~~i~~gDD~iai~s~~~~~g~~~~~~~~nI~i~nc~~~~~~~~-gi~iGs~~~g~i~nI~~~n~~i~~~~~gi  203 (331)
                      +||+|+||+|.++||||++|++++.+|++...|++||+|+||+|++..+| ||+|||++.+.++||+|+||++.++.+|+
T Consensus       247 ~nV~I~n~~i~~gDDcIaiksg~~~dg~~~~~ps~nI~I~n~~~~~~~gh~gisiGS~~~~~v~nV~v~n~~~~~t~~Gi  326 (448)
T 3jur_A          247 KYMLIEKCRFDTGDDSVVIKSGRDADGRRIGVPSEYILVRDNLVISQASHGGLVIGSEMSGGVRNVVARNNVYMNVERAL  326 (448)
T ss_dssp             EEEEEESCEEEESSEEEEEBCCCHHHHHHHCCCEEEEEEESCEEECSSCSEEEEECSSCTTCEEEEEEESCEEESCSEEE
T ss_pred             cCEEEEeeEEEeCCCcEEeccCccccccccCCCceeEEEEEeEEecCCCcceEEECCcccCcEEEEEEEEEEEecccceE
Confidence            99999999999999999999998888888888999999999999654344 99999999999999999999999999999


Q ss_pred             EEEEecCCCceEEeEEEEEEEEccccccE-EEEccCCCCCCCCCCCCCCCeEeeEEEEEEEEecCCcceEEEecCCCCee
Q 020062          204 RIKTDKGRGGYIENITIRNIKMERVKIPI-RISRGSNDHPDEGWDPKALPKIRGISFVNVVSVNTTKAPVLAGIIGTQFE  282 (331)
Q Consensus       204 ~Ik~~~g~~g~i~nV~f~nI~~~~~~~~i-~i~~~y~~~~~~~~~~~~~~~i~nIt~~NI~~~~~~~~~~i~g~~~~~i~  282 (331)
                      +||++.+++|.|+||+|+||+|+++..|+ .|++.|....     ....+.|+||+|+||+++....++.|.|.++.+|+
T Consensus       327 rIKt~~g~gG~v~nI~f~ni~m~~v~~~~i~I~~~Y~~~~-----~~~~~~i~nI~~~NI~~t~~~~~i~i~g~~~~p~~  401 (448)
T 3jur_A          327 RLKTNSRRGGYMENIFFIDNVAVNVSEEVIRINLRYDNEE-----GEYLPVVRSVFVKNLKATGGKYAVRIEGLENDYVK  401 (448)
T ss_dssp             EEECCTTTCSEEEEEEEESCEEEEESSEEEEEESCGGGCC-----CSCCCEEEEEEEESCEEEECSEEEEEECBTTBCEE
T ss_pred             EEEEEcCCCceEeeEEEEEEEEECCccccEEEEeeccCCC-----CCCCceEEEEEEEeEEEEecceEEEEEeCCCCCEe
Confidence            99999988999999999999999999888 9999886531     22356899999999999987778999999999999


Q ss_pred             eEEEEeEEEEecCCCCceEEEe
Q 020062          283 EICMKNVSLLGLAPSAKWQCQF  304 (331)
Q Consensus       283 ~I~~~NV~i~~~~~~~~~~c~~  304 (331)
                      +|+|+||++++.+.  ...|.+
T Consensus       402 ~I~~~nv~i~~~~~--~~~~~~  421 (448)
T 3jur_A          402 DILISDTIIEGAKI--SVLLEF  421 (448)
T ss_dssp             EEEEEEEEEESCSE--EEEEEE
T ss_pred             eEEEEEEEEEcccc--ceeEec
Confidence            99999999998643  345555
>1bhe_A PEHA, polygalacturonase; family 28 glycosyl hydrolase, hydrolyses polygalacturonic acid, glycosidase; 1.90A {Pectobacterium carotovorum subsp} SCOP: b.80.1.3 Back     alignment and structure
>1czf_A Polygalacturonase II; beta helix, hydrolase; HET: NAG; 1.68A {Aspergillus niger} SCOP: b.80.1.3 Back     alignment and structure
>1k5c_A Endopolygalacturonase; beta helical structure, glycoside hydrolase, silver-LEAF IND substance, hydrolase; HET: NAG; 0.96A {Chondrostereum purpureum} SCOP: b.80.1.3 PDB: 1kcc_A* 1kcd_A* Back     alignment and structure
>1hg8_A Endopolygalacturonase; hydrolase, pectin degradation; HET: NAG; 1.73A {Fusarium moniliforme} SCOP: b.80.1.3 Back     alignment and structure
>1ia5_A Polygalacturonase; glycosylhydrolase, hydrolase; HET: MAN NAG; 2.00A {Aspergillus aculeatus} SCOP: b.80.1.3 PDB: 1ib4_A* Back     alignment and structure
>1nhc_A Polygalacturonase I; beta-helix, hydrolase; HET: MAN NAG BMA; 1.70A {Aspergillus niger} SCOP: b.80.1.3 Back     alignment and structure
>2iq7_A Endopolygalacturonase; parallel beta helix, hydrolase; HET: NAG MAN PG4; 1.94A {Colletotrichum lupini} Back     alignment and structure
>1rmg_A Rgase A, rhamnogalacturonase A; hydrolase, inverting, parallel beta-helix, glycosidase; HET: NAG BMA MAN GLC; 2.00A {Aspergillus aculeatus} SCOP: b.80.1.3 Back     alignment and structure
>2uvf_A Exopolygalacturonase; GH28, pectin, cell WALL, hydrolase, periplasm, beta-helix, glycosidase, EXO-activity; HET: AD0; 2.1A {Yersinia enterocolitica} PDB: 2uve_A* Back     alignment and structure
>1ogo_X Dextranase; hydrolase, dextran degradation, glycosidase; HET: BGC GLC; 1.65A {Penicillium minioluteum} SCOP: b.133.1.1 b.80.1.10 PDB: 1ogm_X* Back     alignment and structure
>1x0c_A Isopullulanase; glycoside hydrolase family 49, glycoprotein, hydro; HET: NAG; 1.70A {Aspergillus niger} PDB: 1wmr_A* 2z8g_A* Back     alignment and structure
>2x6w_A Tail spike protein; viral protein, beta-helix, hydrolase; HET: RAM GLC GLA NAG NDG; 1.35A {Enterobacteria phage HK620} PDB: 2vji_A 2vjj_A* 2x85_A* 2x6x_A* 2x6y_A* Back     alignment and structure
>3jur_A EXO-poly-alpha-D-galacturonosidase; beta-helix, cell WALL biogenesis/degradation, glycosidase; 2.05A {Thermotoga maritima} Back     alignment and structure
>3gq8_A Preneck appendage protein; beta helix, viral protein; HET: NHE; 2.00A {Bacillus phage PHI29} PDB: 3gq7_A* 3gq9_A* 3gqa_A Back     alignment and structure
>2uvf_A Exopolygalacturonase; GH28, pectin, cell WALL, hydrolase, periplasm, beta-helix, glycosidase, EXO-activity; HET: AD0; 2.1A {Yersinia enterocolitica} PDB: 2uve_A* Back     alignment and structure
>1h80_A IOTA-carrageenase; hydrolase, IOTA-carrageenan double helix degradation; 1.6A {Alteromonas SP} SCOP: b.80.1.8 PDB: 1ktw_A* 3lmw_A Back     alignment and structure
>2iq7_A Endopolygalacturonase; parallel beta helix, hydrolase; HET: NAG MAN PG4; 1.94A {Colletotrichum lupini} Back     alignment and structure
>1czf_A Polygalacturonase II; beta helix, hydrolase; HET: NAG; 1.68A {Aspergillus niger} SCOP: b.80.1.3 Back     alignment and structure
>1bhe_A PEHA, polygalacturonase; family 28 glycosyl hydrolase, hydrolyses polygalacturonic acid, glycosidase; 1.90A {Pectobacterium carotovorum subsp} SCOP: b.80.1.3 Back     alignment and structure
>1ia5_A Polygalacturonase; glycosylhydrolase, hydrolase; HET: MAN NAG; 2.00A {Aspergillus aculeatus} SCOP: b.80.1.3 PDB: 1ib4_A* Back     alignment and structure
>1nhc_A Polygalacturonase I; beta-helix, hydrolase; HET: MAN NAG BMA; 1.70A {Aspergillus niger} SCOP: b.80.1.3 Back     alignment and structure
>1hg8_A Endopolygalacturonase; hydrolase, pectin degradation; HET: NAG; 1.73A {Fusarium moniliforme} SCOP: b.80.1.3 Back     alignment and structure
>1rmg_A Rgase A, rhamnogalacturonase A; hydrolase, inverting, parallel beta-helix, glycosidase; HET: NAG BMA MAN GLC; 2.00A {Aspergillus aculeatus} SCOP: b.80.1.3 Back     alignment and structure
>1k5c_A Endopolygalacturonase; beta helical structure, glycoside hydrolase, silver-LEAF IND substance, hydrolase; HET: NAG; 0.96A {Chondrostereum purpureum} SCOP: b.80.1.3 PDB: 1kcc_A* 1kcd_A* Back     alignment and structure
>2vbk_A Tailspike-protein; viral adhesion protein, viral protein, hydrolase, endorhamnosidase, right-handed parallel beta-helix; 1.25A {Enterobacteria phage SF6} PDB: 2vbe_A 2vbm_A* Back     alignment and structure
>1x0c_A Isopullulanase; glycoside hydrolase family 49, glycoprotein, hydro; HET: NAG; 1.70A {Aspergillus niger} PDB: 1wmr_A* 2z8g_A* Back     alignment and structure
>1ogo_X Dextranase; hydrolase, dextran degradation, glycosidase; HET: BGC GLC; 1.65A {Penicillium minioluteum} SCOP: b.133.1.1 b.80.1.10 PDB: 1ogm_X* Back     alignment and structure
>1h80_A IOTA-carrageenase; hydrolase, IOTA-carrageenan double helix degradation; 1.6A {Alteromonas SP} SCOP: b.80.1.8 PDB: 1ktw_A* 3lmw_A Back     alignment and structure
>2pyg_A Poly(beta-D-mannuronate) C5 epimerase 4; beta-helix, isomerase; 2.10A {Azotobacter vinelandii} PDB: 2pyh_A* Back     alignment and structure
>3gq8_A Preneck appendage protein; beta helix, viral protein; HET: NHE; 2.00A {Bacillus phage PHI29} PDB: 3gq7_A* 3gq9_A* 3gqa_A Back     alignment and structure
>2x6w_A Tail spike protein; viral protein, beta-helix, hydrolase; HET: RAM GLC GLA NAG NDG; 1.35A {Enterobacteria phage HK620} PDB: 2vji_A 2vjj_A* 2x85_A* 2x6x_A* 2x6y_A* Back     alignment and structure
>2pyg_A Poly(beta-D-mannuronate) C5 epimerase 4; beta-helix, isomerase; 2.10A {Azotobacter vinelandii} PDB: 2pyh_A* Back     alignment and structure
>3eqn_A Glucan 1,3-beta-glucosidase; tandem beta-helix domains, glycosidase, hydrolase; HET: NAG BMA; 1.70A {Phanerochaete chrysosporium} PDB: 3eqo_A* Back     alignment and structure
>1pxz_A Major pollen allergen JUN A 1; parallel beta-helix, cedar pollen; 1.70A {Juniperus ashei} SCOP: b.80.1.1 Back     alignment and structure
>1pcl_A Pectate lyase E; lyase (acting on polysaccharides); 2.20A {Erwinia chrysanthemi} SCOP: b.80.1.1 Back     alignment and structure
>3vmv_A Pectate lyase; polysaccharide lyase family 1, beta-helix, pectolytic, polygalacturonate; 1.54A {Bacillus} PDB: 3vmw_A* Back     alignment and structure
>1air_A Pectate lyase C, PELC; pectate cleavage, pectinolyitc activity, trans-elimination; 2.20A {Erwinia chrysanthemi} SCOP: b.80.1.1 PDB: 1o88_A 1o8d_A 1o8e_A 1o8f_A 1o8g_A 1o8h_A 1o8i_A 1o8j_A 1o8k_A 1o8l_A 1o8m_A 1plu_A 2pec_A 2ewe_A* Back     alignment and structure
>1pxz_A Major pollen allergen JUN A 1; parallel beta-helix, cedar pollen; 1.70A {Juniperus ashei} SCOP: b.80.1.1 Back     alignment and structure
>1pcl_A Pectate lyase E; lyase (acting on polysaccharides); 2.20A {Erwinia chrysanthemi} SCOP: b.80.1.1 Back     alignment and structure
>3zsc_A Pectate trisaccharide-lyase; hydrolase; HET: ADA AQA; 1.94A {Thermotoga maritima} Back     alignment and structure
>2qy1_A Pectate lyase II; GAG lyase; 1.90A {Xanthomonas campestris PV} PDB: 2qxz_A 2qx3_A Back     alignment and structure
>3zsc_A Pectate trisaccharide-lyase; hydrolase; HET: ADA AQA; 1.94A {Thermotoga maritima} Back     alignment and structure
>1vbl_A Pectate lyase 47; PL 47, thermostable, bacillus subtilis, pectin, calcium ION; 1.91A {Bacillus SP} Back     alignment and structure
>2o04_A Pectate lyase, PL; hexasaccharide compound II, calciums; HET: ADA; 1.70A {Bacillus subtilis} PDB: 2nzm_A* 2o0v_A* 2o0w_A 2o17_A* 2o1d_A* 2bsp_A 1bn8_A 3krg_A* Back     alignment and structure
>2qy1_A Pectate lyase II; GAG lyase; 1.90A {Xanthomonas campestris PV} PDB: 2qxz_A 2qx3_A Back     alignment and structure
>1qcx_A Pectin lyase B; beta-helix protein, plant cell WALL; 1.70A {Aspergillus niger} SCOP: b.80.1.2 Back     alignment and structure
>1idk_A Pectin lyase A; signal, glycoprotein, multigene family; 1.93A {Aspergillus niger} SCOP: b.80.1.2 PDB: 1idj_A Back     alignment and structure
>1ru4_A Pectate lyase, PEL9A; parallel beta-helix; 1.60A {Erwinia chrysanthemi} SCOP: b.80.1.9 Back     alignment and structure
>3eqn_A Glucan 1,3-beta-glucosidase; tandem beta-helix domains, glycosidase, hydrolase; HET: NAG BMA; 1.70A {Phanerochaete chrysosporium} PDB: 3eqo_A* Back     alignment and structure
>1pe9_A Pectate lyase A; parallel beta helix; 1.60A {Erwinia chrysanthemi} SCOP: b.80.1.1 PDB: 1ooc_A 1jta_A 1jrg_A Back     alignment and structure
>1air_A Pectate lyase C, PELC; pectate cleavage, pectinolyitc activity, trans-elimination; 2.20A {Erwinia chrysanthemi} SCOP: b.80.1.1 PDB: 1o88_A 1o8d_A 1o8e_A 1o8f_A 1o8g_A 1o8h_A 1o8i_A 1o8j_A 1o8k_A 1o8l_A 1o8m_A 1plu_A 2pec_A 2ewe_A* Back     alignment and structure
>1idk_A Pectin lyase A; signal, glycoprotein, multigene family; 1.93A {Aspergillus niger} SCOP: b.80.1.2 PDB: 1idj_A Back     alignment and structure
>1vbl_A Pectate lyase 47; PL 47, thermostable, bacillus subtilis, pectin, calcium ION; 1.91A {Bacillus SP} Back     alignment and structure
>2o04_A Pectate lyase, PL; hexasaccharide compound II, calciums; HET: ADA; 1.70A {Bacillus subtilis} PDB: 2nzm_A* 2o0v_A* 2o0w_A 2o17_A* 2o1d_A* 2bsp_A 1bn8_A 3krg_A* Back     alignment and structure
>2vbk_A Tailspike-protein; viral adhesion protein, viral protein, hydrolase, endorhamnosidase, right-handed parallel beta-helix; 1.25A {Enterobacteria phage SF6} PDB: 2vbe_A 2vbm_A* Back     alignment and structure
>1pe9_A Pectate lyase A; parallel beta helix; 1.60A {Erwinia chrysanthemi} SCOP: b.80.1.1 PDB: 1ooc_A 1jta_A 1jrg_A Back     alignment and structure
>2inu_A Insulin fructotransferase; right-handed parallel beta-helix, lyase; 1.80A {Bacillus SP} PDB: 2inv_A* Back     alignment and structure
>1qcx_A Pectin lyase B; beta-helix protein, plant cell WALL; 1.70A {Aspergillus niger} SCOP: b.80.1.2 Back     alignment and structure
>1ru4_A Pectate lyase, PEL9A; parallel beta-helix; 1.60A {Erwinia chrysanthemi} SCOP: b.80.1.9 Back     alignment and structure
>2inu_A Insulin fructotransferase; right-handed parallel beta-helix, lyase; 1.80A {Bacillus SP} PDB: 2inv_A* Back     alignment and structure
>1xg2_A Pectinesterase 1; protein-protein complex, beta helix,four helix bundle, hydrolase/hydrolase inhibitor complex; 1.90A {Solanum lycopersicum} Back     alignment and structure
>3vmv_A Pectate lyase; polysaccharide lyase family 1, beta-helix, pectolytic, polygalacturonate; 1.54A {Bacillus} PDB: 3vmw_A* Back     alignment and structure
>1gq8_A Pectinesterase; hydrolase, carboxylic ester hydrolase; 1.75A {Daucus carota} SCOP: b.80.1.5 Back     alignment and structure
>3uw0_A Pectinesterase; right-handed beta-helix, carbohydrate esterase, hydrolase; 3.50A {Yersinia enterocolitica subsp} Back     alignment and structure
>2nsp_A Pectinesterase A; michaelis complex, hydrolase; HET: M8C ADA; 1.70A {Erwinia chrysanthemi} PDB: 2nst_A* 2nt6_A* 2nt9_A* 2ntp_A* 2ntb_A* 2ntq_A* 1qjv_A Back     alignment and structure
>3t9g_A Pectate lyase; PL3, parallel beta-helix; HET: GOL; 1.50A {Caldicellulosiruptor bescii} Back     alignment and structure
>1gq8_A Pectinesterase; hydrolase, carboxylic ester hydrolase; 1.75A {Daucus carota} SCOP: b.80.1.5 Back     alignment and structure
>1xg2_A Pectinesterase 1; protein-protein complex, beta helix,four helix bundle, hydrolase/hydrolase inhibitor complex; 1.90A {Solanum lycopersicum} Back     alignment and structure
>1dbg_A Chondroitinase B; beta helix, polysaccharide lyase, dematan sulfate; HET: MAN RAM GCU MXY G4D BGC; 1.70A {Pedobacter heparinus} SCOP: b.80.1.4 PDB: 1dbo_A* 1ofl_A* 1ofm_A* Back     alignment and structure
>2nsp_A Pectinesterase A; michaelis complex, hydrolase; HET: M8C ADA; 1.70A {Erwinia chrysanthemi} PDB: 2nst_A* 2nt6_A* 2nt9_A* 2ntp_A* 2ntb_A* 2ntq_A* 1qjv_A Back     alignment and structure
>1ee6_A Pectate lyase; parallel beta-helix, high-alkaline, low-molecular-weight; 2.30A {Bacillus SP} SCOP: b.80.1.1 Back     alignment and structure
>3t9g_A Pectate lyase; PL3, parallel beta-helix; HET: GOL; 1.50A {Caldicellulosiruptor bescii} Back     alignment and structure
>3uw0_A Pectinesterase; right-handed beta-helix, carbohydrate esterase, hydrolase; 3.50A {Yersinia enterocolitica subsp} Back     alignment and structure
>1dbg_A Chondroitinase B; beta helix, polysaccharide lyase, dematan sulfate; HET: MAN RAM GCU MXY G4D BGC; 1.70A {Pedobacter heparinus} SCOP: b.80.1.4 PDB: 1dbo_A* 1ofl_A* 1ofm_A* Back     alignment and structure
>1ee6_A Pectate lyase; parallel beta-helix, high-alkaline, low-molecular-weight; 2.30A {Bacillus SP} SCOP: b.80.1.1 Back     alignment and structure
>3riq_A Tailspike protein; right handed beta-helix, endorhamnosidase, lipopolysaccharide, viral protein; 1.50A {Siphovirus 9na} Back     alignment and structure
>3b4n_A Endo-pectate lyase; pectin, galacturonic acid, right-handed parallel beta helix fold; 1.45A {Erwinia chrysanthemi} PDB: 3b8y_A* 3b90_A Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 331
d1bhea_376 b.80.1.3 (A:) Polygalacturonase {Erwinia carotovor 1e-54
d1ia5a_339 b.80.1.3 (A:) Polygalacturonase {Fungus (Aspergill 4e-51
d1czfa_335 b.80.1.3 (A:) Polygalacturonase {Fungus (Aspergill 6e-48
d1nhca_336 b.80.1.3 (A:) Polygalacturonase {Fungus (Aspergill 6e-45
d1hg8a_349 b.80.1.3 (A:) Polygalacturonase {Fusarium monilifo 8e-45
d1k5ca_333 b.80.1.3 (A:) Polygalacturonase {Fungus (Stereum p 3e-42
d1rmga_422 b.80.1.3 (A:) Rhamnogalacturonase A {Aspergillus a 3e-35
d1ogmx2373 b.80.1.10 (X:202-574) Dextranase, catalytic domain 1e-34
d1o88a_353 b.80.1.1 (A:) Pectate lyase {Erwinia chrysanthemi, 6e-22
d1pxza_346 b.80.1.1 (A:) Major pollen allergen Jun a 1 {Ozark 4e-04
>d1bhea_ b.80.1.3 (A:) Polygalacturonase {Erwinia carotovora, subsp. carotovora [TaxId: 554]} Length = 376 Back     information, alignment and structure

class: All beta proteins
fold: Single-stranded right-handed beta-helix
superfamily: Pectin lyase-like
family: Galacturonase
domain: Polygalacturonase
species: Erwinia carotovora, subsp. carotovora [TaxId: 554]

 Score =  181 bits (459), Expect = 1e-54
 Identities = 91/316 (28%), Positives = 132/316 (41%), Gaps = 30/316 (9%)

Query: 2   DEWPIIDPLPSYGRGRERLGGRHISLIHGDHLTNVIITGYNGTIDGQGQMWWDL----WW 57
           +     +  PS     ++ G    + I     TN  I    GTIDGQG +        WW
Sbjct: 77  NNAKSFENAPSSCGVVDKNGKGCDAFITAVSTTNSGIY-GPGTIDGQGGVKLQDKKVSWW 135

Query: 58  N-------RTLKHTRGHLVELMNSNNILISNLTFRNSPFWTIHPVYCRNVVIKGMTILAP 110
                   + LK     L+++  S N  + N++  NSP + +             TI  P
Sbjct: 136 ELAADAKVKKLKQNTPRLIQINKSKNFTLYNVSLINSPNFHVVFSDGDGFTAWKTTIKTP 195

Query: 111 LNAPNTDGIDPDSSTNVCIEDCYIESGDDLVAVKSGWDHYGIAMARPSSNIIVRRVSGTT 170
             A NTDGIDP SS N+ I    I +GDD VA+K+            + NI +      T
Sbjct: 196 STARNTDGIDPMSSKNITIAYSNIATGDDNVAIKAYKGR------AETRNISILHNDFGT 249

Query: 171 PTCSGVGIGSEMSGGIFNVTVDQLHVWDAAAGVRIKTDKGRGGYIENITIRNIKMERVKI 230
                +G     + G++NVTVD L +     G+RIK+DK   G +  +   N+ M+ V  
Sbjct: 250 GHGMSIGS---ETMGVYNVTVDDLKMNGTTNGLRIKSDKSAAGVVNGVRYSNVVMKNVAK 306

Query: 231 PIRISRGSNDHPDEGWDPKALPKIRGISFVNVVSVNTTKAPVLAGIIGTQFEEICMKNVS 290
           PI I     D   E  +   +P    I+F +V S  T    VL G    +  E+ MKNV 
Sbjct: 307 PIVI-----DTVYEKKEGSNVPDWSDITFKDVTS-ETKGVVVLNGENAKKPIEVTMKNVK 360

Query: 291 LLGLAPSAKWQCQFVS 306
           L      + WQ + V+
Sbjct: 361 LTS---DSTWQIKNVN 373
>d1ia5a_ b.80.1.3 (A:) Polygalacturonase {Fungus (Aspergillus aculeatus) [TaxId: 5053]} Length = 339 Back     information, alignment and structure
>d1czfa_ b.80.1.3 (A:) Polygalacturonase {Fungus (Aspergillus niger), endo-polygalacturonase II [TaxId: 5061]} Length = 335 Back     information, alignment and structure
>d1nhca_ b.80.1.3 (A:) Polygalacturonase {Fungus (Aspergillus niger), endo-polygalacturonase I [TaxId: 5061]} Length = 336 Back     information, alignment and structure
>d1hg8a_ b.80.1.3 (A:) Polygalacturonase {Fusarium moniliforme [TaxId: 117187]} Length = 349 Back     information, alignment and structure
>d1k5ca_ b.80.1.3 (A:) Polygalacturonase {Fungus (Stereum purpureum), endo-polygalacturonase I [TaxId: 58369]} Length = 333 Back     information, alignment and structure
>d1rmga_ b.80.1.3 (A:) Rhamnogalacturonase A {Aspergillus aculeatus [TaxId: 5053]} Length = 422 Back     information, alignment and structure
>d1ogmx2 b.80.1.10 (X:202-574) Dextranase, catalytic domain {Penicillium minioluteum [TaxId: 28574]} Length = 373 Back     information, alignment and structure
>d1o88a_ b.80.1.1 (A:) Pectate lyase {Erwinia chrysanthemi, type C [TaxId: 556]} Length = 353 Back     information, alignment and structure
>d1pxza_ b.80.1.1 (A:) Major pollen allergen Jun a 1 {Ozark white cedar (Juniperus ashei) [TaxId: 13101]} Length = 346 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query331
d1ia5a_339 Polygalacturonase {Fungus (Aspergillus aculeatus) 100.0
d1bhea_376 Polygalacturonase {Erwinia carotovora, subsp. caro 100.0
d1nhca_336 Polygalacturonase {Fungus (Aspergillus niger), end 100.0
d1czfa_335 Polygalacturonase {Fungus (Aspergillus niger), end 100.0
d1hg8a_349 Polygalacturonase {Fusarium moniliforme [TaxId: 11 100.0
d1k5ca_333 Polygalacturonase {Fungus (Stereum purpureum), end 100.0
d1rmga_422 Rhamnogalacturonase A {Aspergillus aculeatus [TaxI 100.0
d1ogmx2373 Dextranase, catalytic domain {Penicillium miniolut 100.0
d1ia5a_339 Polygalacturonase {Fungus (Aspergillus aculeatus) 99.9
d1hg8a_349 Polygalacturonase {Fusarium moniliforme [TaxId: 11 99.9
d1bhea_376 Polygalacturonase {Erwinia carotovora, subsp. caro 99.9
d1czfa_335 Polygalacturonase {Fungus (Aspergillus niger), end 99.89
d1nhca_336 Polygalacturonase {Fungus (Aspergillus niger), end 99.88
d1rmga_422 Rhamnogalacturonase A {Aspergillus aculeatus [TaxI 99.78
d1k5ca_333 Polygalacturonase {Fungus (Stereum purpureum), end 99.76
d1ogmx2373 Dextranase, catalytic domain {Penicillium miniolut 99.65
d1o88a_353 Pectate lyase {Erwinia chrysanthemi, type C [TaxId 98.85
d1idka_359 Pectin lyase {Aspergillus niger, type A [TaxId: 50 97.96
d1pxza_346 Major pollen allergen Jun a 1 {Ozark white cedar ( 97.89
d1qcxa_359 Pectin lyase {Aspergillus niger, type B [TaxId: 50 97.88
d1o88a_353 Pectate lyase {Erwinia chrysanthemi, type C [TaxId 97.78
d1pcla_355 Pectate lyase {Erwinia chrysanthemi, type E [TaxId 97.62
d1pcla_355 Pectate lyase {Erwinia chrysanthemi, type E [TaxId 97.29
d1bn8a_399 Pectate lyase {Bacillus subtilis [TaxId: 1423]} 97.28
d1pe9a_361 Pectate lyase {Erwinia chrysanthemi, type A [TaxId 97.27
d1idka_359 Pectin lyase {Aspergillus niger, type A [TaxId: 50 97.19
d1bn8a_399 Pectate lyase {Bacillus subtilis [TaxId: 1423]} 97.14
d1qcxa_359 Pectin lyase {Aspergillus niger, type B [TaxId: 50 97.1
d1pe9a_361 Pectate lyase {Erwinia chrysanthemi, type A [TaxId 96.52
d1pxza_346 Major pollen allergen Jun a 1 {Ozark white cedar ( 94.77
d1h80a_464 iota-carrageenase {Alteromonas sp., atcc 43554 [Ta 94.73
d1h80a_ 464 iota-carrageenase {Alteromonas sp., atcc 43554 [Ta 88.58
d1ofla_ 481 Chondroitinase B {Pedobacter heparinus [TaxId: 984 87.46
d1tywa_554 P22 tailspike protein {Salmonella phage P22 [TaxId 86.88
d1gq8a_319 Pectin methylesterase PemA {Carrot (Daucus carota) 85.21
d1ee6a_197 Pectate lyase {Bacillus sp., strain ksmp15 [TaxId: 82.24
>d1ia5a_ b.80.1.3 (A:) Polygalacturonase {Fungus (Aspergillus aculeatus) [TaxId: 5053]} Back     information, alignment and structure
class: All beta proteins
fold: Single-stranded right-handed beta-helix
superfamily: Pectin lyase-like
family: Galacturonase
domain: Polygalacturonase
species: Fungus (Aspergillus aculeatus) [TaxId: 5053]

Probab=100.00  E-value=2.4e-52  Score=392.14  Aligned_cols=261  Identities=25%  Similarity=0.311  Sum_probs=226.0

Q ss_pred             eeeEEEeceeeeEEEeCCe--EEEcCCchhhcccccCCCCCCCceEEEEEeeccEEEeceEEeCCCceEEeEEeeEcEEE
Q 020062           25 ISLIHGDHLTNVIITGYNG--TIDGQGQMWWDLWWNRTLKHTRGHLVELMNSNNILISNLTFRNSPFWTIHPVYCRNVVI  102 (331)
Q Consensus        25 ~~lI~~~~~~nV~I~G~~G--~IdG~g~~~w~~~~~~~~~~~rp~~i~~~~~~nv~i~giti~n~~~~~i~~~~s~nV~i  102 (331)
                      .+|+.+. .+||+|+|. |  +|||+|+.||+..... ....||++|.|.+|+|++|+||+++|+|+|++++..|+||+|
T Consensus        64 g~l~~~~-g~ni~i~G~-g~g~IDG~G~~wW~~~~~~-~~~~rP~~l~~~~~~nv~i~gitl~nsp~w~~~~~~s~nv~i  140 (339)
T d1ia5a_          64 GPLISVS-GSDLTITGA-SGHSINGDGSRWWDGEGGN-GGKTKPKFFAAHSLTNSVISGLKIVNSPVQVFSVAGSDYLTL  140 (339)
T ss_dssp             CCSEEEE-EESCEEEEC-TTCEEECCGGGTCSSCTTT-SSSCCCCCEEEEEEEEEEEESCEEECCSSCCEEEESCEEEEE
T ss_pred             CCeEEEE-eeeEEEEec-CCCeEeCCchhhhhcccCC-CCCCCCeEEEEEecCCCEEeceEEEcCCceEEEEecccEEEE
Confidence            4566555 499999997 5  9999999999865433 346799999999999999999999999999999999999999


Q ss_pred             EeEEEECCC----CCCCCCccccCCCccEEEEeeEEeeCCceEEEccCCCccCcccCCCcccEEEEEEEEeCCCCCEEEE
Q 020062          103 KGMTILAPL----NAPNTDGIDPDSSTNVCIEDCYIESGDDLVAVKSGWDHYGIAMARPSSNIIVRRVSGTTPTCSGVGI  178 (331)
Q Consensus       103 ~n~~i~~~~----~~~n~DGi~~~~s~nV~I~n~~i~~gDD~iai~s~~~~~g~~~~~~~~nI~i~nc~~~~~~~~gi~i  178 (331)
                      +|++|.++.    .++|+||||+.+|+||+|+||+|+++||||++|+            .+||+|+||+|..  +||++|
T Consensus       141 ~~v~I~~~~~~~~~~~NtDGidi~~s~nV~I~n~~i~~gDDcIaiks------------~~ni~i~n~~c~~--ghG~si  206 (339)
T d1ia5a_         141 KDITIDNSDGDDNGGHNTDAFDIGTSTYVTISGATVYNQDDCVAVNS------------GENIYFSGGYCSG--GHGLSI  206 (339)
T ss_dssp             ESCEEECGGGTTTTCCSCCSEEEESCEEEEEESCEEECSSCSEEESS------------EEEEEEESCEEES--SSCEEE
T ss_pred             EEEEEecccCCccCCCCCCccccCCCCeEEEeeeEEEcCCCeEEecC------------ccEEEEEEeEEec--ccccee
Confidence            999999863    4689999999999999999999999999999997            4899999999986  477766


Q ss_pred             e---ccccCCEEEEEEEeeEEeCCCceEEEEEecCCCceEEeEEEEEEEEccc-cccEEEEccCCCCCCCCCCCCCCCeE
Q 020062          179 G---SEMSGGIFNVTVDQLHVWDAAAGVRIKTDKGRGGYIENITIRNIKMERV-KIPIRISRGSNDHPDEGWDPKALPKI  254 (331)
Q Consensus       179 G---s~~~g~i~nI~~~n~~i~~~~~gi~Ik~~~g~~g~i~nV~f~nI~~~~~-~~~i~i~~~y~~~~~~~~~~~~~~~i  254 (331)
                      |   +++.+.|+||+|+||++.++.+|+|||++++++|.|+||+|+||+|+++ +.||.|++.|.....   .+...++|
T Consensus       207 gslG~~~~~~v~nV~v~n~~~~~t~~GirIKt~~g~~G~v~nV~f~ni~~~~v~~~pI~I~~~Y~~~~~---~~~~~v~i  283 (339)
T d1ia5a_         207 GSVGGRSDNTVKNVTFVDSTIINSDNGVRIKTNIDTTGSVSDVTYKDITLTSIAKYGIVVQQNYGDTSS---TPTTGVPI  283 (339)
T ss_dssp             EEECSSSCCEEEEEEEEEEEEESCSEEEEEEEETTCCCEEEEEEEEEEEEEEESSEEEEEEEEETCTTS---CCCSSSCE
T ss_pred             cccccCccccEEEEEEECCcccCCcceeEEeeeCCCCEEEEEEEEEEEEEeccccccEEEEeecCCCCC---CCCCCcEE
Confidence            5   4566789999999999999999999999999999999999999999998 479999999864321   23344589


Q ss_pred             eeEEEEEEEEecCC-cceEEEecCCCCeeeEEEEeEEEEecCCCCceEEEeeee
Q 020062          255 RGISFVNVVSVNTT-KAPVLAGIIGTQFEEICMKNVSLLGLAPSAKWQCQFVSG  307 (331)
Q Consensus       255 ~nIt~~NI~~~~~~-~~~~i~g~~~~~i~~I~~~NV~i~~~~~~~~~~c~~v~g  307 (331)
                      +||+|+||+++... .+..+.|.++.+|++|+|+||+|++.+  +.+.|.|+.+
T Consensus       284 ~nI~~~Ni~gt~~~~~~~~~~~~~~~p~~ni~~~nV~itg~~--~~~~C~nv~~  335 (339)
T d1ia5a_         284 TDFVLDNVHGSVVSSGTNILISCGSGSCSDWTWTDVSVSGGK--TSSKCTNVPS  335 (339)
T ss_dssp             EEEEEEEEEEEECTTSEEEEEECCTTCEEEEEEEEEEEESSB--CCSCCBSCCT
T ss_pred             EeEEEEeEEEEecccCceEEEeCCCCCEeceEEEeEEEcCCC--cceEeECCCc
Confidence            99999999998764 456678889999999999999998643  4677988865
>d1bhea_ b.80.1.3 (A:) Polygalacturonase {Erwinia carotovora, subsp. carotovora [TaxId: 554]} Back     information, alignment and structure
>d1nhca_ b.80.1.3 (A:) Polygalacturonase {Fungus (Aspergillus niger), endo-polygalacturonase I [TaxId: 5061]} Back     information, alignment and structure
>d1czfa_ b.80.1.3 (A:) Polygalacturonase {Fungus (Aspergillus niger), endo-polygalacturonase II [TaxId: 5061]} Back     information, alignment and structure
>d1hg8a_ b.80.1.3 (A:) Polygalacturonase {Fusarium moniliforme [TaxId: 117187]} Back     information, alignment and structure
>d1k5ca_ b.80.1.3 (A:) Polygalacturonase {Fungus (Stereum purpureum), endo-polygalacturonase I [TaxId: 58369]} Back     information, alignment and structure
>d1rmga_ b.80.1.3 (A:) Rhamnogalacturonase A {Aspergillus aculeatus [TaxId: 5053]} Back     information, alignment and structure
>d1ogmx2 b.80.1.10 (X:202-574) Dextranase, catalytic domain {Penicillium minioluteum [TaxId: 28574]} Back     information, alignment and structure
>d1ia5a_ b.80.1.3 (A:) Polygalacturonase {Fungus (Aspergillus aculeatus) [TaxId: 5053]} Back     information, alignment and structure
>d1hg8a_ b.80.1.3 (A:) Polygalacturonase {Fusarium moniliforme [TaxId: 117187]} Back     information, alignment and structure
>d1bhea_ b.80.1.3 (A:) Polygalacturonase {Erwinia carotovora, subsp. carotovora [TaxId: 554]} Back     information, alignment and structure
>d1czfa_ b.80.1.3 (A:) Polygalacturonase {Fungus (Aspergillus niger), endo-polygalacturonase II [TaxId: 5061]} Back     information, alignment and structure
>d1nhca_ b.80.1.3 (A:) Polygalacturonase {Fungus (Aspergillus niger), endo-polygalacturonase I [TaxId: 5061]} Back     information, alignment and structure
>d1rmga_ b.80.1.3 (A:) Rhamnogalacturonase A {Aspergillus aculeatus [TaxId: 5053]} Back     information, alignment and structure
>d1k5ca_ b.80.1.3 (A:) Polygalacturonase {Fungus (Stereum purpureum), endo-polygalacturonase I [TaxId: 58369]} Back     information, alignment and structure
>d1ogmx2 b.80.1.10 (X:202-574) Dextranase, catalytic domain {Penicillium minioluteum [TaxId: 28574]} Back     information, alignment and structure
>d1o88a_ b.80.1.1 (A:) Pectate lyase {Erwinia chrysanthemi, type C [TaxId: 556]} Back     information, alignment and structure
>d1idka_ b.80.1.2 (A:) Pectin lyase {Aspergillus niger, type A [TaxId: 5061]} Back     information, alignment and structure
>d1pxza_ b.80.1.1 (A:) Major pollen allergen Jun a 1 {Ozark white cedar (Juniperus ashei) [TaxId: 13101]} Back     information, alignment and structure
>d1qcxa_ b.80.1.2 (A:) Pectin lyase {Aspergillus niger, type B [TaxId: 5061]} Back     information, alignment and structure
>d1o88a_ b.80.1.1 (A:) Pectate lyase {Erwinia chrysanthemi, type C [TaxId: 556]} Back     information, alignment and structure
>d1pcla_ b.80.1.1 (A:) Pectate lyase {Erwinia chrysanthemi, type E [TaxId: 556]} Back     information, alignment and structure
>d1pcla_ b.80.1.1 (A:) Pectate lyase {Erwinia chrysanthemi, type E [TaxId: 556]} Back     information, alignment and structure
>d1bn8a_ b.80.1.1 (A:) Pectate lyase {Bacillus subtilis [TaxId: 1423]} Back     information, alignment and structure
>d1pe9a_ b.80.1.1 (A:) Pectate lyase {Erwinia chrysanthemi, type A [TaxId: 556]} Back     information, alignment and structure
>d1idka_ b.80.1.2 (A:) Pectin lyase {Aspergillus niger, type A [TaxId: 5061]} Back     information, alignment and structure
>d1bn8a_ b.80.1.1 (A:) Pectate lyase {Bacillus subtilis [TaxId: 1423]} Back     information, alignment and structure
>d1qcxa_ b.80.1.2 (A:) Pectin lyase {Aspergillus niger, type B [TaxId: 5061]} Back     information, alignment and structure
>d1pe9a_ b.80.1.1 (A:) Pectate lyase {Erwinia chrysanthemi, type A [TaxId: 556]} Back     information, alignment and structure
>d1pxza_ b.80.1.1 (A:) Major pollen allergen Jun a 1 {Ozark white cedar (Juniperus ashei) [TaxId: 13101]} Back     information, alignment and structure
>d1h80a_ b.80.1.8 (A:) iota-carrageenase {Alteromonas sp., atcc 43554 [TaxId: 232]} Back     information, alignment and structure
>d1h80a_ b.80.1.8 (A:) iota-carrageenase {Alteromonas sp., atcc 43554 [TaxId: 232]} Back     information, alignment and structure
>d1ofla_ b.80.1.4 (A:) Chondroitinase B {Pedobacter heparinus [TaxId: 984]} Back     information, alignment and structure
>d1tywa_ b.80.1.6 (A:) P22 tailspike protein {Salmonella phage P22 [TaxId: 10754]} Back     information, alignment and structure
>d1gq8a_ b.80.1.5 (A:) Pectin methylesterase PemA {Carrot (Daucus carota) [TaxId: 4039]} Back     information, alignment and structure
>d1ee6a_ b.80.1.1 (A:) Pectate lyase {Bacillus sp., strain ksmp15 [TaxId: 1409]} Back     information, alignment and structure